TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.32714 %AT, 4626375 nt, 44035 terms. Intergenic: 0.368907 %AT, H2T: 398916 nt, 3548 terms; T2T: 135844 nt, 2705 terms; H2H: 145813 nt, 2689 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|119382757|ref|NC_008686.1| Paracoccus denitrificans PD1222 chromosome 1, complete sequence (length 2852282) Pden_0001 170 - 616 + | hypothetical protein TERM 1 654 - 674 + F 74 -2.4 -4.72272 | overlap 659 TCTGCCTATGTGACC CGCAACCG CCGTC CGGTGGGG TTTTTCCTGACACAG rho 709 - 2013 + | transcription termination factor Rho Pden_0003 2030 - 3289 + | tRNA modification GTPase TrmE TERM 2 4605 - 4634 + G 72 -6.3 -4.36262 | opp_overlap 4614, overlap 4623 CCGGCTCTCGCTTCG GGCGGATAACGCT GATC AGCGTTTGACGCC TTTTGGTATCGATAT Pden_0004 3298 - 5157 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Pden_0005 5157 - 5738 + | methyltransferase GidB TERM 3 5997 - 5954 - g 78 -12.4 -3.74693 | gap 1 GCGCATTGCAGGAAA CG-CTGCGCGACACGGCGATT GCC AATCTCCGCGTCGTGCCGTCG AACCGCGACCTTGCC Pden_0006 5731 - 6507 + | cobyrinic acid a,c-diamide synthase Pden_0007 6517 - 7395 + | parB-like partition proteins TERM 4 7471 - 7493 + T 95 -16.3 -3.96327 | opp_overlap 7471 GGCCACCAAGAAAAA GCCCCGGAG GATCA CTCCGGGGC TTTGTGCTGCCGGGT TERM 5 7493 - 7471 - T 100 -16.3 -5.1356 | opp_overlap 7471 GGCCACCAAGAAAAA GCCCCGGAG GATCA CTCCGGGGC TTTGTGCTGCCGGGT Pden_0008 8065 - 7526 - | GrpE protein TERM 6 8001 - 8022 + g 74 -10.9 -3.78775 | TCGGGCGAGGGCACC TCATCGGCC GGCG GGTCGATGA TTTCCTCATCCAGCG hrcA 9128 - 8073 - | heat-inducible transcription repressor Pden_0010 9211 - 9936 + | ribonuclease PH Pden_0011 9924 - 10529 + | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 7 10796 - 10778 - g 71 -10.2 -3.72576 | CCTTGGTCGATGAAA TCGCCCCG GTG CTGGGCGA GGCGATGAAGGATGC Pden_0012 10522 - 10896 + | endoribonuclease L-PSP TERM 8 11111 - 11126 + G 75 -5.4 -4.56597 | opp_overlap 11101 11102 CGAAACGCCGGGCCG GGTGCT GAAC AGCATC TTTTTCGGCGGCGGC Pden_0013 10905 - 12089 + | coproporphyrinogen III oxidase Pden_0014 12091 - 12444 + | hypothetical protein Pden_0015 12535 - 13119 + | glutathione-dependent formaldehyde-activating enzyme TERM 9 13174 - 13145 - f 78 -10.5 -3.99324 | opp_overlap 13145 GGTCACGACGATAAA CGGCGGGGGTCGG TTTA CCGGCCCCCGAGG CCATGAGAAGCACAA Pden_0016 13223 - 14350 + | alcohol dehydrogenase TERM 10 14408 - 14375 - f 100 -19.5 -4.18018 | overlap 14376 14378 GCTGCTTAGTTAAAA GGACGGCGGGGGCGG GCGA CCGGCCCCGCCGTCA ACATGAAAGGACCGA TERM 11 14407 - 14376 - f 100 -23 -3.10597 | overlap 14375 14378 CTGCTTAGTTAAAAG GACGGCGGGGGCGG GCGA CCGGCCCCGCCGTC AACATGAAAGGACCG TERM 12 14405 - 14378 - f 100 -19.8 -3.11208 | overlap 14376 14375 GCTTAGTTAAAAGGA CGGCGGGGGCGG GCGA CCGGCCCCGCCG TCAACATGAAAGGAC Pden_0017 14426 - 15061 + | endopeptidase Clp Pden_0018 15058 - 15579 + | GCN5-related N-acetyltransferase TERM 13 15622 - 15608 - g 73 -7 -4.14511 | AACCGTATCGGAAAA CCGCAG CTT CGGCGG TATCCAGGGCGTCTA TERM 14 15696 - 15732 + G 71 -11 -3.55563 | gap 2 ATCTACCTGCCGCCC GATGCC-CGGCA-CGGCA AGG TGCCGGTGCTGTGGTATC TTTCGGGCCTGACCT Pden_0019 15576 - 16415 + | carboxylesterase Pden_0020 16615 - 18417 + | Pyrrolo-quinoline quinone TERM 15 18487 - 18453 - f 77 -12.1 -3.60475 | gap 1, opp_overlap 18451 18454, overlap 18454 AACTGTGACTCGAAA CTGG-GCGCCCCAGGG GTAA CCTTGGGGCGCGCCAT CATCTTCGGGTGACA TERM 16 18454 - 18486 + F 84 -17.8 -2.75074 | gap 1, opp_overlap 18453 18454, overlap 18451 ACTGTGACTCGAAAC TGG-GCGCCCCAGGG GTAA CCTTGGGGCGCGCCA TCATCTTCGGGTGAC TERM 17 18486 - 18454 - f 78 -15.6 -2.75963 | gap 1, opp_overlap 18454 18451, overlap 18453 ACTGTGACTCGAAAC TGG-GCGCCCCAGGG GTAA CCTTGGGGCGCGCCA TCATCTTCGGGTGAC Pden_0021 18519 - 19199 + | hypothetical protein TERM 18 19390 - 19351 - g 91 -20.2 -3.29461 | gap 1 CAAGGGCTTCGAGAA CCGCATCGCCCAGCTTTTC GCC GAAAAGCTGGGCG-TGCCG GTCGCCTATACCTGG Pden_0022 19196 - 20008 + | extracellular solute-binding protein TERM 19 20060 - 20011 - g 82 -17.8 -3.06509 | opp_overlap 20021 20041, overlap 20006 TTTGAAACAATGAGA TGGGCTTGGGCGGCGCTGGC TGTGGTTCTG GCCGGCGCGGCCCAGGCCCA AGTGCCCGAGCCGCC Pden_0023 20005 - 20535 + | rhodanese TERM 20 20513 - 20561 + T 74 -14.7 -2.56164 | gap 3, opp_overlap 20493 20546, overlap 20512 GCGGTTCCCTGGAAC CTGCCAGCCCTGCCGGCC-CATGA CTCG TCAAGAGGCCGGCAGG-C-GGCGG ATTGGTCATTCCGCC Pden_0024 21118 - 20567 - | hypothetical protein Pden_0025 21679 - 21122 - | hypothetical protein Pden_0026 21795 - 22982 + | hypothetical protein Pden_0027 22991 - 23962 + | YVTN beta-propeller repeat-containing protein Pden_0028 23986 - 24555 + | hypothetical protein Pden_0029 24593 - 25312 + | ABC transporter related Pden_0030 25309 - 26127 + | ABC-2 type transporter Pden_0031 26124 - 26714 + | hypothetical protein Pden_0032 26711 - 27313 + | molybdopterin-guanine dinucleotide biosynthesis protein A Pden_0033 28041 - 27310 - | binding-protein-dependent transport systems inner membrane component Pden_0034 28796 - 28038 - | ABC transporter related Pden_0035 29467 - 28793 - | TenA family transcription regulator TERM 21 28863 - 28875 + g 72 -6.2 -4.37092 | CGATCCGACAGCGCG GCCC AACGC GGGC TTTTCTCGGGCGCCT Pden_0036 30435 - 29464 - | NlpA lipoprotein Pden_0037 31394 - 30432 - | UBA/THIF-type NAD/FAD binding protein TERM 22 30551 - 30531 - G 72 -14.7 -2.90392 | CAGGCCGGAACGACA GGCCAGCAC CAC GCGCTGGCC GGGATCGGGCAGGGG TERM 23 31123 - 31179 + g 80 -15.8 -3.16564 | gap 1 TCGATTTCCACCGCA GGAT-TCAGCCGGGCCACGGCCTGCGC TGCG GCGCGGACCTTGGGCTGGCCGATATCC TTCATGCGGTAAAGC thiE 31987 - 31391 - | thiamine-phosphate pyrophosphorylase thiG 32748 - 31984 - | thiazole synthase Pden_0040 32947 - 32750 - | thiamine biosynthesis protein ThiS Pden_0041 33908 - 32931 - | FAD dependent oxidoreductase Pden_0042 34759 - 33905 - | phosphomethylpyrimidine kinase Pden_0043 35028 - 35630 + | HAD family hydrolase TERM 24 35658 - 35684 + F 71 -8 -4.1552 | gap 1 GCTCAGGTGGCTGTC GCGCCG-GGGT CATTGA ACCTGCGGCGC TTTCTTGCCAGCATG Pden_0044 35726 - 36292 + | hypothetical protein Pden_0045 36791 - 36357 - | 3-dehydroquinate dehydratase, type II Pden_0046 37519 - 36818 - | two component transcriptional regulator Pden_0047 39392 - 37512 - | PAS/PAC sensor hybrid histidine kinase TERM 25 38039 - 38029 - G 71 -2.4 -4.56597 | GCCTCGTCGGAAAAA CCCG GGC CGGT ATCGGTGACCGAGAT Pden_0048 39505 - 41481 + | AMP-dependent synthetase and ligase Pden_0049 41478 - 42287 + | ABC transporter related Pden_0050 42298 - 43278 + | inner-membrane translocator Pden_0051 43354 - 44460 + | inner-membrane translocator Pden_0052 44505 - 45785 + | Fis family transcriptional regulator Pden_0053 45839 - 46663 + | ABC transporter related TERM 26 46916 - 46893 - g 76 -8 -4.38712 | overlap 46894 46897 CCGAGGCGCAGAAAA GGACGCCGCC CTTC GGCGGCTTCA CCACCCGGCCGGCGC Pden_0054 46682 - 47899 + | phenylacetate-CoA ligase, putative TERM 27 48357 - 48321 - T 93 -14.4 -4.08064 | opp_overlap 48327, overlap 48325 48327 AAGCGGGTCTGAAAA GCAAGACGCCCGCAGC GCGAG GCTGCGGGCGTTCTGA ATTCGGATGATCCGC TERM 28 48353 - 48325 - T 90 -16 -3.66908 | opp_overlap 48327, overlap 48321 48327 GGGTCTGAAAAGCAA GACGCCCGCAGC GCGAG GCTGCGGGCGTT CTGAATTCGGATGAT TERM 29 48351 - 48327 - T 93 -18.6 -3.41359 | opp_overlap 48327, overlap 48325 48321 GTCTGAAAAGCAAGA CGCCCGCAGC GCGAG GCTGCGGGCG TTCTGAATTCGGATG TERM 30 48327 - 48351 + T 93 -18.6 -3.42354 | opp_overlap 48327 48325 48321 GTCTGAAAAGCAAGA CGCCCGCAGC GCGAG GCTGCGGGCG TTCTGAATTCGGATG Pden_0055 48504 - 48379 - | ribosomal protein L36 TERM 31 48579 - 48555 - H 86 -7 -4.86731 | overlap 48557 48568 GCCTTGGAAACAAAA TACCCCCGGA CAAGC CCCGGGGGCG CGAAATCATGGTGGG TERM 32 48577 - 48557 - H 84 -11.8 -4.05678 | overlap 48555 48568 CTTGGAAACAAAATA CCCCCGGA CAAGC CCCGGGGG CGCGAAATCATGGTG Pden_0056 48847 - 49710 + | N-formylglutamate amidohydrolase Pden_0057 49729 - 50616 + | band 7 protein Pden_0058 50750 - 51301 + | NUDIX hydrolase Pden_0059 51353 - 51982 + | glutathione S-transferase domain-containing protein Pden_0060 52687 - 51983 - | orotidine 5'-phosphate decarboxylase TERM 33 52747 - 52769 + H 100 -3.2 -5.75945 | overlap 52748 52749 ATTGACGCGCCCGAA TGCGACGGGG AAA CTCCGGCGGG TTTTTTTTAAGGGGT TERM 34 52949 - 52984 + G 76 -13.2 -3.48024 | gap 1, opp_overlap 52927 52944 52943, overlap 52947 AGTGCGAAATCCGCC GCGCGCTGCCCG-GCGG TGA TCGCGCTGGAAGCGCGC TATTTCATGATCAAG Pden_0061 52790 - 53563 + | hypothetical protein TERM 35 53606 - 53651 + F 72 -9 -4.07568 | gap 3, opp_overlap 53614, overlap 53606 CACATATCCCTCGAA G-GCC-AACAGGCTGCGTGCCGC CAA GCGG-GCGCAGCCGGATCGGCGC TTTTGAAAGGAGACA TERM 36 53641 - 53614 - f 72 -13.4 -3.09492 | gap 1, opp_overlap 53606 53606 CCTCGAAGGCCAACA GGCTGCGTGCCGC CAA GCGGG-CGCAGCC GGATCGGCGCTTTTG Pden_0062 53670 - 56297 + | ATPase TERM 37 56307 - 56330 + F 95 -14.6 -4.13767 | opp_overlap 56306 56301 CACTAAGAAGCGAAG GGGCGGATGC TTGT GTATCCGCCC TTTTCCGATCCGACG TERM 38 56528 - 56550 + G 75 -10.5 -4.07568 | overlap 56508 CGACGCCCGCCCTTG GGCTGGGGG GGGCG CCCTCGGCC TTTTCGACCGACGAG Pden_0063 56428 - 57324 + | putative sulfite oxidase subunit YedY Pden_0064 57324 - 57950 + | ferric reductase domain-containing protein Pden_0065 57925 - 58224 + | hypothetical protein TERM 39 59389 - 59402 + T 79 -6.7 -4.46212 | GACATCGCAGGACCG CTCCA GAGA TGGAG TTTTCTCGTAAGAGA TERM 40 60341 - 60354 + T 72 -6.7 -4.23892 | TCCTGTCGGACGCAT TGCTC TTCG GAGCA TTTTACATCGTTCAG TERM 41 60496 - 60476 - T 78 -12.7 -3.44186 | opp_overlap 60473 60491, overlap 60491 AAGTACACTAACCAA TGTTCCTTC GAC GAAGGAACA AAGTCCCTTCCTCGG TERM 42 60518 - 60499 - T 78 -7.8 -4.34737 | opp_overlap 60491, overlap 60491 60501 CGACGAAGGAACAAA GTCCCTTC CTCG GAAGGGGC GGGAAACGTACATGC TERM 43 60787 - 60752 - T 74 -11.2 -3.62864 | opp_overlap 60721 60743 60745, overlap 60753 60783 GAAACCCACCTGAAA TCCAGTTGTTGTTACC CTCG GGTATCAACAACCGGG TTAACCAGGTACTTA TERM 44 60786 - 60753 - T 75 -14.7 -2.77236 | opp_overlap 60721 60743 60745, overlap 60752 60783 AAACCCACCTGAAAT CCAGTTGTTGTTACC CTCG GGTATCAACAACCGG GTTAACCAGGTACTT TERM 45 62368 - 62355 - T 78 -4.5 -4.7254 | overlap 62360 ACTGTTTACTAAAAA CACAG GGCT CTGCG AAGCCGTAAGGCGAC TERM 46 63732 - 63715 - T 100 -9.1 -4.93296 | CGACGATGACAAAAA GCGCTGA CAAT CCAGCGC AAACGGCCGCGGGGT TERM 47 63880 - 63917 + T 78 -12.8 -3.51708 | opp_overlap 63882 63886, overlap 63882 63885 GTAATCGGCGAACTA C-ACAAAGCCCCGGACGC GGAA GCG-CCGGGGCGTTGTCG TTGGTTTGCGGCCTG TERM 48 63882 - 63914 + T 80 -15.6 -2.89569 | gap 1, opp_overlap 63882 63886, overlap 63880 63885 AATCGGCGAACTACA CAAAGCCCCGGACGC GGAA GCG-CCGGGGCGTTG TCGTTGGTTTGCGGC TERM 49 63914 - 63882 - T 80 -15.6 -2.90571 | gap 1, opp_overlap 63880 63882 63885, overlap 63886 AATCGGCGAACTACA CAAAGCCCCGGACGC GGAA GCG-CCGGGGCGTTG TCGTTGGTTTGCGGC TERM 50 63885 - 63911 + T 74 -11.5 -3.58914 | gap 1, opp_overlap 63882 63886, overlap 63882 63880 CGGCGAACTACACAA AGCCCCGGACGC GGAA GCG-CCGGGGCG TTGTCGTTGGTTTGC TERM 51 63910 - 63886 - T 95 -15 -4.1347 | gap 1, opp_overlap 63885 63882 63880, overlap 63882 GGCGAACTACACAAA GCCCCGGACGC GGAA GCG-CCGGGGC GTTGTCGTTGGTTTG Pden_0066 64503 - 64006 - | hypothetical protein TERM 52 64142 - 64166 + g 71 -2.7 -4.62471 | overlap 64123 64143 64144 64146 TAGCGGTTGGCGTCG TTGACGATGCC GCT GGCCTTGTCCG TTTTTACGCATTGAC TERM 53 64823 - 64838 + G 77 -3.2 -4.74103 | gap 1 GTTCTGCGCCAGAAG CCG-GCC GGC GGTGCGG TTTTTGCATTCCGCG Pden_0067 64712 - 65059 + | IS66 Orf2 family protein Pden_0068 65122 - 66750 + | transposase IS66 Pden_0069 66750 - 67046 + | hypothetical protein Pden_0070 67266 - 67024 - | hypothetical protein Pden_0071 67303 - 67578 + | hypothetical protein Pden_0072 67679 - 69196 + | CHAD domain-containing protein Pden_0073 69196 - 69945 + | cobyrinic acid a,c-diamide synthase Pden_0074 69942 - 70397 + | adenylate cyclase Pden_0075 70706 - 70419 - | hypothetical protein Pden_0076 71199 - 70813 - | hypothetical protein Pden_0077 71248 - 71667 + | transposase Pden_0078 71795 - 72022 + | putative transposase TERM 54 72490 - 72471 - g 73 -7 -4.14472 | CGAATATCTGGAAAA GCCCGTGC ATCC GCGCGAGC TGGTCGCGCGCGTGC Pden_0079 72151 - 72867 + | two component transcriptional regulator TERM 55 73508 - 73522 + G 72 -9.2 -4.0825 | CTTGTCGAACATGCG GGCCGG AAG CTGGCC TTCTTTGCTTCGCAC Pden_0080 72869 - 75208 + | PAS/PAC sensor hybrid histidine kinase TERM 56 75348 - 75333 - f 79 -10.4 -4.15044 | GCCTTGGGGAAGAAA GGCGGA AGCG TCCGCC GGATCGCCCTGAGAT Pden_0081 75555 - 77324 + | regulatory protein, LuxR Pden_0082 77426 - 77737 + | hypothetical protein Pden_0083 78135 - 77791 - | hypothetical protein TERM 57 78249 - 78273 + H 77 -11.3 -3.7732 | opp_overlap 78244 TGTCGATCAAGCTCA CGGGCGGCAGT GTA ACCGCCGCCAG TTATTCCTGTGCGGG TERM 58 78536 - 78556 + G 95 -15.4 -4.05229 | overlap 78529 CGCGCAGTTCGATCA GGCCCCGG TCAGC CCGGGGCC TTTCCTATTTGATTT Pden_0084 78314 - 78568 + | hypothetical protein Pden_0085 79049 - 79255 + | hypothetical protein TERM 59 79263 - 79288 + G 78 -9.1 -4.30719 | opp_overlap 79264, overlap 79260 79264 CATCCTGAAGATCAA ATTGGCAGAAA AGAT TTTCTGCCAAA TTTGTTGTCCCAAGA TERM 60 79287 - 79264 - g 81 -12.6 -3.92592 | opp_overlap 79263 79260 79264 ATCCTGAAGATCAAA TTGGCAGAAA AGAT TTTCTGCCAA ATTTGTTGTCCCAAG Pden_0086 79239 - 79514 + | hypothetical protein Pden_0087 79557 - 80267 + | acylneuraminate cytidylyltransferase Pden_0088 80264 - 81310 + | flagellin modification protein FlmD TERM 61 81842 - 81852 + G 70 -8.2 -3.91897 | opp_overlap 81841 81842 ACGAGCTATTATAAC CCCC GCT GGGG TTTCTGCCTACCACA Pden_0089 81485 - 82816 + | hypothetical protein TERM 62 82960 - 83016 + G 75 -5 -4.56597 | overlap 82951 82949 82962 82962 GCTGGCCTTCCCGAC GACCTCGGCAGGCTTTTCGCGCTG CATTTCCGC CGGCGCGAAGAGGCTGAGGAGCGC TTTTTCGGCCAGCCC Pden_0090 82819 - 83619 + | hypothetical protein Pden_0091 84885 - 83710 - | hypothetical protein Pden_0092 86716 - 85055 - | hypothetical protein TERM 63 86651 - 86624 - G 71 -9.8 -3.75105 | gap 1, opp_overlap 86639 CCAAGCCATGAAGAA CCGCGCCA-ACCG GAA CGGCGTGCCGCGG AACAGCCGGCGTGCC Pden_0093 87855 - 86854 - | polysaccharide biosynthesis protein CapD Pden_0094 88311 - 88201 - | transposase IS116/IS110/IS902 Pden_0095 89019 - 88450 - | resolvase domain-containing protein Pden_0096 89344 - 89625 + | hypothetical protein Pden_0097 90434 - 89793 - | hypothetical protein Pden_0098 90688 - 90443 - | conjugal transfer TraD family protein Pden_0099 91028 - 90690 - | hypothetical protein Pden_0100 91189 - 94185 + | MobA/MobL protein Pden_0101 94681 - 94406 - | hypothetical protein Pden_0102 94879 - 95094 + | phage transcriptional regulator, AlpA Pden_0103 95326 - 95817 + | hypothetical protein TERM 64 95944 - 95968 + G 78 -12.2 -3.72576 | gap 1, opp_overlap 95944 95942 CGGTTGCGCAGAAGA TCGGC-GCGGT GGAG ACCGCCGCCGA TTTCCTGAAAGCGCG Pden_0104 95814 - 96074 + | hypothetical protein Pden_0106 99429 - 97636 - | recombinase Pden_0105 96094 - 97743 + | recombinase TERM 65 97752 - 97775 + gF 100 -8 -5.21709 | opp_overlap 97752 ACGATAATTGCGAAA CCTCCAAGGC AACC GCCGAGGAGG TTTTTTGCTGTCCGC Pden_0107 99430 - 99915 + | hypothetical protein Pden_0108 101091 - 100054 - | aldo/keto reductase Pden_0109 101268 - 102167 + | AraC-like transcriptional regulator Pden_0110 102685 - 102305 - | hypothetical protein Pden_0111 103602 - 102697 - | hypothetical protein Pden_0112 105035 - 103599 - | hypothetical protein Pden_0113 106597 - 105698 - | TIR protein TERM 66 106334 - 106349 + g 84 -4.6 -5.09173 | opp_overlap 106324, overlap 106322 106321 AACGACCAGCTTCGC GCTGAG GCTG CTCTGC TTTTTTGCAATCTTA Pden_0114 107211 - 106933 - | SH3 type 3 domain-containing protein Pden_0115 108014 - 107337 - | yecA family protein TERM 67 108108 - 108136 + r 78 -13.7 -3.21099 | overlap 108109 108127 CCGGTTCCGGCATGG ATGCGCCCGCCCC AGG GGAGCGGGCGCGC TTCGTCATGCGGCCC TERM 68 108109 - 108135 + r 83 -17.2 -2.52516 | overlap 108108 108127 CGGTTCCGGCATGGA TGCGCCCGCCCC AGG GGAGCGGGCGCG CTTCGTCATGCGGCC Pden_0116 108776 - 108141 - | hexapaptide repeat-containing transferase Pden_0117 109037 - 109393 + | hypothetical protein Pden_0118 109402 - 109755 + | hypothetical protein Pden_0119 109994 - 110410 + | hypothetical protein Pden_0120 110943 - 111620 + | DNA methylase N-4/N-6 domain-containing protein Pden_0121 111692 - 111982 + | hypothetical protein TERM 69 112002 - 112040 + F 77 -15.2 -2.87344 | opp_overlap 112002 112004 112007 CCTACCAGCCCACAA TATCACGGCCGCCGGTCC ATC GGATCGGCGGCCGTCGCG TGTGTGCAGCGCATA TERM 70 112038 - 112004 - f 86 -15.6 -3.23869 | opp_overlap 112002, overlap 112002 112007 TACCAGCCCACAATA TCACGGCCGCCGGTCC ATC GGATCGGCGGCCGTCG CGTGTGTGCAGCGCA TERM 71 112035 - 112007 - f 100 -21.7 -2.8055 | opp_overlap 112002, overlap 112004 112002 CAGCCCACAATATCA CGGCCGCCGGTCC ATC GGATCGGCGGCCG TCGCGTGTGTGCAGC TERM 72 112104 - 112074 - f 100 -9.7 -5.01732 | gap 2, overlap 112062 112075 112076 AAGGCGCCGAAAAAA TCGCGCTCGCCGGGC ATG GCCCGGCT--CGCGA AGACAAGGCGGAGAA TERM 73 112105 - 112075 - f 71 -10.2 -3.60316 | overlap 112062 112074 112076 AGGCGCCGAAAAAAT CGCGCTCGCCGGGC ATG GCCCGGCTCGCGAA GACAAGGCGGAGAAA TERM 74 112607 - 112621 + G 72 -5.6 -4.39426 | opp_overlap 112606 112607 GTGAACGAACAGAAC CCCAAG GCG CTCGGG TTTTATGAGCGTATC Pden_0122 112280 - 112741 + | hypothetical protein TERM 75 112815 - 112790 - f 84 -13.9 -3.64703 | overlap 112792 CCGCTCCCATGGAAA GACCCGGCGGC TGGA ACCGCCGGGGC CACTGGGCCTCCGGC TERM 76 112813 - 112792 - f 84 -15.1 -3.40597 | overlap 112790 GCTCCCATGGAAAGA CCCGGCGGC TGGA ACCGCCGGG GCCACTGGGCCTCCG Pden_0123 113488 - 113898 + | single-strand binding protein TERM 77 113915 - 113936 + G 95 -15.1 -4.16943 | CGGGAGGCCCGAGAG CCCGGCGGT TTCA GCCGCCGGG TTTTCCCATGTCCGC TERM 78 114018 - 113986 - g 100 -22.8 -3.48276 | GCGCCGCCCAGAGAA GGCTTCCCGACCGG ATCGA CCGGCCGGGAAGCC TCCGGCGCGGGCCTG Pden_0124 113876 - 114208 + | hypothetical protein TERM 79 114424 - 114404 - f 70 -11.1 -3.40403 | GCCGGGTCAGTAGAA GGGGCCG GACGGAT CGGCCCC CAAACCCGGAGAGAC Pden_0125 114444 - 114647 + | hypothetical protein Pden_0126 115048 - 115260 + | hypothetical protein Pden_0127 115730 - 115281 - | hypothetical protein Pden_0128 116091 - 115825 - | hypothetical protein Pden_0129 116501 - 116238 - | hypothetical protein Pden_0130 116923 - 116687 - | XRE family transcriptional regulator Pden_0131 117115 - 117384 + | hypothetical protein TERM 80 117780 - 117827 + G 81 -10.5 -4.2828 | opp_overlap 117778, overlap 117781 CGCTTGCAATCGACG ACGGTCGCCACC-TCGATCCGCC AGCC GGCGGAACGGCGGCGGC-ACCGG TTTTCCTGGATCAAC TERM 81 117781 - 117826 + G 72 -14 -3.16647 | opp_overlap 117778, overlap 117780 GCTTGCAATCGACGA CGGTCGCCACC-TCGATCCGCC AGCC GGCGGAACGGCGGCGGC-ACCG GTTTTCCTGGATCAA Pden_0132 117381 - 118250 + | putative replication protein A TERM 82 118441 - 118457 + F 70 -8 -3.99898 | GTAGGCGCGCGTCGG TCGGTG GAGAA CACCGA TTTGTCCCTTAATTC Pden_0133 118506 - 119006 + | hypothetical protein Pden_0134 119003 - 120622 + | transposase IS116/IS110/IS902 family protein Pden_0135 121111 - 121665 + | hypothetical protein Pden_0136 121919 - 122851 + | hypothetical protein TERM 83 123371 - 123401 + G 72 -13.3 -3.15861 | gap 1 CGCGCCTATGTCGCC GCGCTCGCGCCGCT GATG GGCGGCGTGA-CGC TTCCTGGCAGTCCTC Pden_0137 122855 - 123550 + | lytic transglycosylase, catalytic Pden_0138 123600 - 124181 + | hypothetical protein TERM 84 124258 - 124228 - f 83 -9.5 -4.4009 | opp_overlap 124228 124230, overlap 124229 124230 CTCCATCGCAGAAAA GGGCGTCGCGGCC TGTTG GGCCGCGGCGCTT TTAGGACGGCAAGAT TERM 85 124257 - 124229 - f 74 -13 -3.23733 | opp_overlap 124228 124230, overlap 124228 124230 TCCATCGCAGAAAAG GGCGTCGCGGCC TGTTG GGCCGCGGCGCT TTTAGGACGGCAAGA TERM 86 124230 - 124256 + F 100 -19.4 -4.07568 | opp_overlap 124230 124229 124228, overlap 124228 CCATCGCAGAAAAGG GCGTCGCGGCCT GTT GGGCCGCGGCGC TTTTAGGACGGCAAG TERM 87 124256 - 124230 - f 81 -16.5 -2.53918 | opp_overlap 124228 124230, overlap 124229 124228 CCATCGCAGAAAAGG GCGTCGCGGCC TGTTG GGCCGCGGCGC TTTTAGGACGGCAAG TERM 88 124294 - 124278 - f 91 -10.8 -4.67608 | GACGGCAAGATAAAA GCCCGC GATGT GCGGGC CGGGCGGTTGGGGAT TERM 89 124785 - 124750 - g 72 -3.9 -4.56597 | opp_overlap 124702 CGCGGTGGCGAAAAA GCCCGCATGTTCGAT CCACAC AGCGACGATGCGGAC ATCAAGGACTTCGCC Pden_0139 124423 - 126159 + | hypothetical protein Pden_0140 126242 - 126493 + | prevent-host-death family protein Pden_0141 126578 - 126934 + | PilT protein-like Pden_0142 127107 - 129131 + | TRAG family protein Pden_0143 129135 - 129545 + | hypothetical protein Pden_0144 129894 - 129586 - | plasmid stabilization system protein Pden_0145 130160 - 129891 - | CopG family transcriptional regulator Pden_0146 130599 - 130357 - | hypothetical protein Pden_0147 131779 - 130604 - | conjugation TrbI family protein Pden_0148 132783 - 131779 - | conjugal transfer protein TrbG/VirB9/CagX TERM 90 132068 - 132030 - G 78 -16.6 -3.06798 | GAAAGACCACATAGA CCCGGCGGCCGTCATCGA AGA CCGAGACCGGCCGCCAGG GTGGGCTCGCGCCTT Pden_0149 133469 - 132780 - | conjugal transfer protein Pden_0150 134785 - 133466 - | TrbL/VirB6 plasmid conjugal transfer protein Pden_0151 135080 - 134793 - | hypothetical protein Pden_0152 135901 - 135101 - | conjugal transfer protein TrbJ Pden_0153 138516 - 135898 - | AAA ATPase Pden_0154 138809 - 138528 - | conjugal transfer protein TrbB Pden_0155 139138 - 138809 - | conjugal transfer protein TrbC Pden_0156 140139 - 139135 - | type II secretion system protein E TERM 91 140296 - 140268 - R 82 -3.8 -5.09225 | gap 1, overlap 140270 AGGGGAGCGAAAAAA TACAGGAAGCCTG CGGC CCGGCTGCCTG-A CATATGATGGAAAGC TERM 92 140295 - 140270 - R 72 -8.9 -4.17608 | overlap 140268 GGGAGCGAAAAAATA CAGGAAGCCTG CGGC CCGGCTGCCTG ACATATGATGGAAAG Pden_0157 141215 - 140328 - | LysR family transcriptional regulator Pden_0158 141467 - 141246 - | hypothetical protein TERM 93 141339 - 141307 - G 70 -3.9 -4.43844 | overlap 141308 GCAGTAGCGACAAAA TCGAACACCACGCGC TTT GCGATCGGCGCTCGC TTGCGGATCACTTTG Pden_0159 141974 - 141627 - | hypothetical protein Pden_0160 145134 - 142033 - | acriflavin resistance protein Pden_0161 146280 - 145138 - | RND family efflux transporter MFP subunit TERM 94 145354 - 145312 - G 80 -18.2 -2.94416 | GAGCCGCAGCACATA GGCCCCGTCCCCGTCCTCGC GCA GCGCGGTCGCGGGCAGGGCC AGCACATCGGCGCGT Pden_0162 147182 - 146505 - | MltA-interacting MipA family protein Pden_0163 147265 - 147627 + | hypothetical protein Pden_0164 147614 - 148240 + | TetR family transcriptional regulator Pden_0166 149005 - 148664 - | regulatory protein, ArsR Pden_0167 149251 - 150348 + | cupin 2 domain-containing protein Pden_0168 150370 - 151140 + | hypothetical protein Pden_0169 151964 - 151137 - | regulatory proteins, IclR Pden_0170 152380 - 151979 - | thioesterase superfamily protein Pden_0171 152463 - 153608 + | monooxygenase, FAD-binding TERM 95 154442 - 154493 + G 75 -8.4 -4.16842 | gap 1, overlap 154429 154443 TGCTGCTGCCGGGCC AGCCCAGGCCGGC-GGCGGTGTTCG AGG CGATCGCCACCTGCCGGCCCACGCA TTTCTTCGGCCTGCC Pden_0172 153619 - 155283 + | benzoate-CoA ligase family Pden_0173 155383 - 156093 + | fumarylacetoacetate (FAA) hydrolase Pden_0174 156090 - 156743 + | maleylacetoacetate isomerase Pden_0175 156769 - 157950 + | putative ABC transporter binding protein Pden_0176 157992 - 158912 + | inner-membrane translocator Pden_0177 158917 - 159918 + | inner-membrane translocator Pden_0178 159915 - 160664 + | ABC transporter related TERM 96 161313 - 161287 - g 72 -9.4 -4.08216 | gap 1, overlap 161288 CTATGTGGTCGAAAA GGGCCGCACCG TCTGGT CGG-GCGACCC CGACCGCGTGCGCGC Pden_0179 160664 - 161365 + | ABC transporter related TERM 97 161522 - 161578 + G 77 -11.4 -3.90318 | CAGACCGTGACCCGC GGCGCCGC-GGCGGGGATCCGCGACAGC CTT GCCGCCGTCGATG-CCGCCAGCCGCGCC TTTGTCGAATGGTCG Pden_0180 161423 - 162874 + | aldehyde dehydrogenase Pden_0181 162937 - 164652 + | glucose-methanol-choline oxidoreductase Pden_0182 164730 - 165875 + | beta-lactamase-like protein Pden_0183 167233 - 165932 - | D-amino acid dehydrogenase small subunit TERM 98 167312 - 167326 + r 89 -12.8 -4.05446 | opp_overlap 167310 TTGCCTGAGAGTATC GCCGCG CTT CGCGGC TTTCTCCTTCGGCGG Pden_0184 168204 - 167506 - | hypothetical protein Pden_0185 168968 - 168231 - | hypothetical protein TERM 99 168947 - 168960 + g 71 -2.3 -4.5366 | overlap 168953 ATACCGGGCCATTGG CGATC TGAA GAACG TTTTCCATTTTTTCG Pden_0186 170164 - 169001 - | amidohydrolase Pden_0187 170313 - 170816 + | MarR family transcriptional regulator Pden_0188 171662 - 170847 - | regulatory proteins, IclR TERM 100 171298 - 171257 - G 70 -15.1 -2.71364 | opp_overlap 171260 171262, overlap 171279 CCACGGCGGCAAGCA CCGTCTGCGACCCGCGATT ATAG ACCCGCAGGTCGCAGCCGA AATCGACATCTCTCG Pden_0189 173552 - 171675 - | TRAP C4-dicarboxylate transport system permease DctM subunit Pden_0190 174082 - 173552 - | tripartite ATP-independent periplasmic transporter DctQ Pden_0191 174593 - 174180 - | glyoxalase/bleomycin resistance protein/dioxygenase Pden_0192 175390 - 174620 - | short-chain dehydrogenase/reductase SDR TERM 101 175502 - 175527 + r 100 -19.7 -4.65895 | CAGGCCGATCGTGCC GGTCGGGGGCC GACG GGCCCCCGGCC TTTTTCCGTCAGAGC Pden_0193 176624 - 175536 - | TRAP dicarboxylate transporter- DctP subunit TERM 102 175912 - 175891 - G 72 -5.7 -4.2461 | overlap 175892 AGGTTCATGAAGAAA TGGACGGCC GCCT GGCCTTCCC ACCAGGACGGGAAAT TERM 103 177255 - 177229 - g 90 -10 -4.69664 | overlap 177232 GACATCACCGAAAAA CAGGGCCCCGCG GGC CGCATGGCGCTG GTCAGGCTGCGCCAC Pden_0194 176899 - 177723 + | hypothetical protein Pden_0195 177720 - 178925 + | L-carnitine dehydratase/bile acid-inducible protein F Pden_0196 178909 - 179730 + | short-chain dehydrogenase/reductase SDR TERM 104 180564 - 180599 + G 75 -8.8 -4.19238 | CAGCAGGAACTGGTG GCCGCCGGCTGGCTGG GCCG CAAGTCGGGCCGCGGC TTTTACGATTACGCC Pden_0197 179751 - 181280 + | 3-hydroxybutyryl-CoA dehydrogenase Pden_0198 182495 - 181335 - | butyryl-CoA dehydrogenase TERM 105 182950 - 182970 + r 80 -13.9 -3.30243 | opp_overlap 182942 CCAAGGACGCCGCCA CCGGCGCGG TCG CCGCGCAGG TTCTGGGCCATGAAT TERM 106 183872 - 183895 + r 100 -18.2 -4.13767 | opp_overlap 183872 CACCGCCACCCGAAA GCCCCGCATC CGGC GATGCGGGGC TTTTGCCATGGGGCG TERM 107 183895 - 183872 - R 93 -18.2 -3.60296 | opp_overlap 183872 CACCGCCACCCGAAA GCCCCGCATC CGGC GATGCGGGGC TTTTGCCATGGGGCG Pden_0201 185984 - 183912 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 108 186596 - 186628 + G 70 -8.4 -3.85698 | gap 1 GCCGACCTGCTGGAG GCGTT-CTCGCGCAG CGAC CTGCGCGACCGGCGC TTTCTGCCCGAGCAC Pden_0202 186326 - 186856 + | flavin reductase domain-containing protein Pden_0203 186916 - 188004 + | luciferase family protein Pden_0204 188036 - 188707 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase Pden_0205 189028 - 188774 - | hypothetical protein Pden_0206 189945 - 189154 - | short-chain dehydrogenase/reductase SDR TERM 109 189886 - 189834 - G 70 -12 -3.31322 | TGTAATCGGCGATAA CGACATCGGCACCGGCCT-GCGCCAG GGA CTGG-GCGATCCCGGCGCCGATCCCG CGCCCTCCGCCCGTG TERM 110 190110 - 190123 + r 70 -5.2 -4.4261 | opp_overlap 190092 CGGCGCAATCCCTGA CCGC CCGGCT GCGG TTTTCCTATTCGCCG Pden_0207 191124 - 190129 - | alpha/beta hydrolase fold Pden_0208 191351 - 191172 - | 4-oxalocrotonate tautomerase Pden_0209 191454 - 192362 + | LysR family transcriptional regulator Pden_0210 193013 - 192405 - | hypothetical protein Pden_0211 193600 - 193178 - | MerR family transcriptional regulator TERM 111 194271 - 194322 + G 82 -15.8 -3.36749 | gap 1, opp_overlap 194255, overlap 194268 194264 194262 CCTGATGACCATCGC CGCGACCGGCGCGCTGTTCATCGGC GCG GCCGAGGAGGCG-GCGCTGGTCGTG TTCCTGTTCGCGGTG Pden_0212 193651 - 195927 + | heavy metal translocating P-type ATPase Pden_0213 195927 - 196523 + | S-isoprenylcysteine methyltransferase-like protein Pden_0214 197680 - 196604 - | arsenical-resistance protein Pden_0215 198137 - 197709 - | arsenate reductase Pden_0216 198683 - 198147 - | protein tyrosine phosphatase Pden_0217 199038 - 198676 - | regulatory protein, ArsR Pden_0218 199089 - 199535 + | LysR family transcriptional regulator Pden_0219 199766 - 200146 + | hypothetical protein TERM 112 200654 - 200635 - g 75 -6.4 -4.46615 | overlap 200639 CATCATCAAGGAAAA CCAGGACA AGAT CATCCTGG CGGACCAGTTGGGCT Pden_0220 200561 - 201643 + | luciferase family protein TERM 113 201681 - 201650 - f 83 -14.5 -3.21218 | gap 1, opp_overlap 201650 201651, overlap 201654 ATCCGGTAGGACGAA CGG-ACCGGCAGCC CGGAC GGCTGCCGGTGCCA TTTGCGGGAAAGGAC TERM 114 201650 - 201681 + F 75 -12.3 -3.53012 | gap 1, opp_overlap 201650 201654, overlap 201651 ATCCGGTAGGACGAA CGG-ACCGGCAGCC CGGAC GGCTGCCGGTGCCA TTTGCGGGAAAGGAC TERM 115 201651 - 201680 + F 78 -15.8 -2.71712 | gap 1, opp_overlap 201650 201654, overlap 201650 TCCGGTAGGACGAAC GG-ACCGGCAGCC CGGAC GGCTGCCGGTGCC ATTTGCGGGAAAGGA TERM 116 201676 - 201654 - f 81 -16.3 -2.57795 | opp_overlap 201651 201650, overlap 201650 GGTAGGACGAACGGA CCGGCAGCC CGGAC GGCTGCCGG TGCCATTTGCGGGAA Pden_0221 201702 - 202565 + | hypothetical protein Pden_0222 202555 - 203775 + | L-carnitine dehydratase/bile acid-inducible protein F Pden_0223 203895 - 205325 + | succinate-semialdehyde dehydrogenase (NAD(P)(+)) Pden_0224 207240 - 205387 - | sigma-54 dependent trancsriptional regulator Pden_0225 207832 - 207290 - | flavin reductase domain-containing protein TERM 117 207704 - 207677 - G 79 -15.6 -3.32343 | opp_overlap 207677 207685, overlap 207678 CCGATAGGTCGAGAA CGGCACCGCCGT GGTA ACGGCGATGCCA TGGTTCATCCCCGCC TERM 118 207703 - 207678 - G 73 -16.9 -2.59191 | opp_overlap 207677 207685, overlap 207677 CGATAGGTCGAGAAC GGCACCGCCGT GGTA ACGGCGATGCC ATGGTTCATCCCCGC Pden_0226 208970 - 208050 - | luciferase family protein Pden_0227 209307 - 209038 - | hypothetical protein Pden_0228 209846 - 209307 - | xylose isomerase domain-containing protein Pden_0229 210658 - 209861 - | xylose isomerase domain-containing protein TERM 119 210664 - 210681 + r 77 -8.3 -4.2528 | overlap 210659 GCAGGTTCATGCGCG GCCCCCG GCGG CGGTGGC TTTGTTGACTTCGGG Pden_0230 211734 - 210655 - | luciferase family protein TERM 120 211690 - 211719 + g 73 -7.8 -4.22338 | GTCGATTCCACTTTC GGGATATGCGGC GCAGCG GTCGCGCATCCC TTTTCCGGTTGTCAT TERM 121 211783 - 211799 + H 75 -6.6 -4.43859 | opp_overlap 211775 AAAAATGGTCCGCTG TTCCGA ACATA TCGGAA TTTTATGCCATTATC Pden_0231 211824 - 212726 + | LysR family transcriptional regulator Pden_0232 213429 - 212737 - | TetR family transcriptional regulator TERM 122 212995 - 212983 - G 75 -4.7 -4.56597 | overlap 212984 212985 CCCGGTGTCGAAAAA GGCCG TCG CGGCG CGGACATCCCTGGCG TERM 123 213318 - 213359 + g 72 -9.2 -4.00532 | overlap 213319 GGATCCGTTCGCGCA ACCCGGCGTCTCGGGGCT TTCCCC GGCCCCGACCGGCCGGGC TTTCCTGTTTCGCAG TERM 124 214061 - 214088 + G 72 -9.2 -4.0371 | gap 1, opp_overlap 214055 214063, overlap 214036 GCTGCAACAGCATCA GACCGA-TCTCGT GGC ACGAGAGTCGGCC TTTCTCTCGACCCTG TERM 125 214477 - 214534 + G 72 -15.6 -2.92475 | gap 3, overlap 214514 GCCGCACCGTCTGCG CCGCGCGCC-T-GCAT-CCGCAGCCGGAT CTG ACCGGGCTGCGGCGCGCGATGGCGCGCGG CTTTCTGGCGATCGC TERM 126 214514 - 214535 + G 81 -12.9 -3.87815 | overlap 214477 GGATCTGACCGGGCT GCGGCGCGC GATG GCGCGCGGC TTTCTGGCGATCGCG TERM 127 214693 - 214733 + G 71 -11.8 -3.54424 | overlap 214719 TCGGCGGCGCGGTCG CGGCGCTGGCGGCC-GTCGC CTG GCGGCTGGACGTC-GTGCCG TTTGCAGAGGTCCCG Pden_0233 213456 - 215417 + | membrane protein-like Pden_0234 215564 - 215908 + | hypothetical protein Pden_0235 216918 - 215905 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_0236 217913 - 216915 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 128 217137 - 217106 - G 77 -10.8 -3.89346 | gap 1, opp_overlap 217107 CGGGTATCTGATAAA GCCGCCGCGCGCTGG TTT CCAGCG-ACGGCACC GCGCGCAGAAGGCCG Pden_0237 218785 - 217913 - | binding-protein-dependent transport systems inner membrane component Pden_0238 219720 - 218785 - | binding-protein-dependent transport systems inner membrane component TERM 129 219341 - 219319 - G 73 -7.6 -4.21194 | overlap 219329 GCCCAGCAGGGAAAA CACCCGAAAC CCC GCATCGGGCG CGCGGTTGCGATTCA TERM 130 219734 - 219781 + r 84 -14 -3.58343 | gap 1, overlap 219733 ATGTAACCTCCGGTC GCGCTCAGGCGCGCT-GCGCCAG ATC CAGGCGCCAGCGCGCATAGCCGC TTTCGACCTGGTAGC Pden_0239 221327 - 219738 - | extracellular solute-binding protein TERM 131 220854 - 220842 - G 76 -2.6 -4.72272 | GCCCCCCAGGAAAAA CGGA TCCGG CCCG TTCAGCGTGAACGTC Pden_0240 222094 - 221408 - | GntR family transcriptional regulator Pden_0241 222145 - 223182 + | (R)-2-hydroxyacid dehydrogenase TERM 132 224226 - 224243 + G 71 -2.5 -4.57569 | overlap 224227 AGGCCGAGGCCGCCA TCGCCGC CATT GCCGCGC TTTTTGCGCAGGTGG Pden_0242 223208 - 224464 + | iron-containing alcohol dehydrogenase Pden_0243 224461 - 225939 + | succinate-semialdehyde dehydrogenase (NAD(P)(+)) Pden_0244 225977 - 227128 + | mandelate racemase/muconate lactonizing protein TERM 133 227209 - 227232 + G 74 -15.2 -3.05343 | TTTTCCGACATGGCC GGCCCGGCCG GGAA CGGCCGGGAC TGTTCGACATATCGG Pden_0245 227187 - 228044 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase Pden_0246 228259 - 229149 + | xylose isomerase domain-containing protein TERM 134 229603 - 229570 - g 91 -14.5 -3.83568 | GCAGACCGACAACAA CCTGCAGCCGGCGAT GGAA ACCGCCGCCAGCAGG GGTATCGCGGTCGTC Pden_0247 229193 - 230239 + | periplasmic binding protein/LacI transcriptional regulator TERM 135 230245 - 230277 + F 77 -13.4 -3.30159 | gap 1, opp_overlap 230240, overlap 230248 GGCGGAATGATCGAG GACCGCGGGGCGGGC ATCC GTCCGCCCC-CGATC TTCTCCAACGCTTCG TERM 136 230248 - 230274 + F 70 -13.7 -2.52742 | gap 1, opp_overlap 230240, overlap 230245 GGAATGATCGAGGAC CGCGGGGCGGGC ATCC GTCCGCCCC-CG ATCTTCTCCAACGCT TERM 137 231608 - 231572 - g 78 -8.7 -4.3534 | gap 1, opp_overlap 231597 231599, overlap 231574 CGGCAACCAGCAAAA GGCCATCATCGGCCGC TGGCTG GCGGCGGATG-TGGAC ATCCTGCTGTTCGAC Pden_0248 230457 - 231896 + | ABC transporter related Pden_0249 231893 - 232855 + | inner-membrane translocator TERM 138 233229 - 233267 + G 70 -8.7 -3.86897 | gap 1, overlap 233253 CGTCTCGGCTTTCGA TCGCGCGGCCACCCTGCT CCAT GGC-GCGCGGCAGCGCGA TTTCTACGGCGTCGG Pden_0250 232852 - 233715 + | DNA-binding transcriptional repressor RpiR Pden_0251 233732 - 234574 + | ribokinase-like domain-containing protein Pden_0252 234849 - 234598 - | transposase (class I) Pden_0253 235479 - 234955 - | hypothetical protein TERM 139 235622 - 235648 + G 100 -10.9 -5.44119 | gap 1, overlap 235625 TCAGCATCTTACGCG CA-AGCCCCGGT CACC GCCGGGGCTCTG TTTTTTTGCGGTCAA TERM 140 235625 - 235644 + G 78 -12.8 -3.76885 | overlap 235622 GCATCTTACGCGCAA GCCCCGGT CACC GCCGGGGC TCTGTTTTTTTGCGG Pden_0254 235511 - 235789 + | hypothetical protein TERM 141 235795 - 235779 - f 100 -15.1 -5.86061 | GCCGAGCAAAAAAAA GCGGCGC ATA GCGCCGC CAAGTTAGGTTGATG TERM 142 236080 - 236099 + F 88 -11.4 -4.24002 | CCGCCTATTTGGGAA GCCAGGCC GTCA GGTCTGGC TTTTCCCATTTAAGG Pden_0255 236307 - 236864 + | hypothetical protein Pden_0256 236988 - 237242 + | hypothetical protein Pden_0257 237779 - 237429 - | hypothetical protein Pden_0258 238126 - 237776 - | hypothetical protein Pden_0259 238183 - 238512 + | hypothetical protein Pden_0260 239064 - 238789 - | hypothetical protein Pden_0261 239984 - 239190 - | D12 class N6 adenine-specific DNA methyltransferase Pden_0262 240562 - 239981 - | hypothetical protein Pden_0263 242226 - 240559 - | DNA-cytosine methyltransferase Pden_0264 242420 - 242716 + | hypothetical protein Pden_0265 242716 - 243093 + | XRE family transcriptional regulator TERM 143 243157 - 243140 - g 70 -12.7 -3.28712 | opp_overlap 243140 CGTGGGCTGGTAGAA GGCGGCA TACT TGCCGCC TTTCCGGTCTCGCAG TERM 144 243140 - 243157 + G 74 -12.7 -3.63627 | opp_overlap 243140 CGTGGGCTGGTAGAA GGCGGCA TACT TGCCGCC TTTCCGGTCTCGCAG Pden_0266 243083 - 243817 + | hypothetical protein TERM 145 243910 - 243889 - T 77 -12.3 -3.56092 | CGACCAGCGGCGAAA GCAGATCGC CCCG GCGATCCGC TGCCCACCCCGGAGG Pden_0267 244910 - 243957 - | peptidoglycan binding domain-containing protein TERM 146 244954 - 244939 - R 100 -11.8 -5.4505 | GTCGGCAATAAAAAA CCCGCC GTCA GGCGGG CGGGGAAGCAGTGGG Pden_0268 245237 - 244980 - | hypothetical protein Pden_0269 245617 - 245264 - | hypothetical protein Pden_0270 249644 - 245625 - | gene transfer agent (GTA) like protein TERM 147 248593 - 248575 - G 78 -16 -3.08278 | opp_overlap 248564 248587 TGAACGACAGATACA TCGGCGGG CGT CCCGCCGA AATTCGGGCGGTTCT Pden_0271 250086 - 249649 - | NlpC/P60 family phage cell wall peptidase Pden_0272 250967 - 250083 - | phage protein Pden_0273 251590 - 250964 - | hypothetical protein TERM 148 251522 - 251558 + g 74 -14.3 -3.28712 | overlap 251527 CTCGACCACCTGCGT CATGCGCCGGGGCCCGC CAC GTGCGCCCCGGCTGATG TTGTCGGGAAAACGG TERM 149 251527 - 251553 + g 78 -17.2 -2.80074 | overlap 251522 CCACCTGCGTCATGC GCCGGGGCCCGC CAC GTGCGCCCCGGC TGATGTTGTCGGGAA Pden_0274 252849 - 251590 - | hypothetical protein TERM 150 251973 - 251956 - G 75 -5.5 -4.66609 | opp_overlap 251969, overlap 251967 251968 GAGCGGATCGAAAAA GCCGG AAACAAGG CCGGC CAAGGGGCCGGTGAT TERM 151 252172 - 252194 + g 86 -3.3 -5.1861 | opp_overlap 252160 252172, overlap 252161 ATACTCGGCAAGCGA CCGGCCG ATTGCGTTC CAGCCGG TTTTTTCCTGATCAA Pden_0275 253898 - 252834 - | hypothetical protein TERM 152 254771 - 254798 + G 80 -17 -2.88249 | AGATCCTCATCGACC GGCTCGAGGGCA GGCT TGCCCCCGAGCC TGTCTGCGAAGTGTC Pden_0276 254344 - 254865 + | putative sugar-binding protein Pden_0277 255678 - 254938 - | ChaC family protein Pden_0278 256203 - 257528 + | major facilitator transporter TERM 153 257535 - 257519 - f 71 -13.7 -2.76225 | opp_overlap 257528, overlap 257506 257510 AACCAAGGGCAAGCA CCTGCGC TAG GCGCAGG TCGTCGATCGCGCCT TERM 154 258904 - 258949 + G 83 -15.4 -3.59979 | gap 3 CGAAGAGGAGTTCGT GGCCCAGGCCCGCCAGCG-CGGC GTT GCCGTCGCCT-CGGGCC-GGGCC TTTCGGCTGAGCGAG Pden_0279 257705 - 259090 + | GntR family transcriptional regulator Pden_0280 259188 - 259973 + | ABC transporter related Pden_0281 259973 - 260818 + | extracellular solute-binding protein Pden_0282 260877 - 261533 + | amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine Pden_0283 261535 - 262194 + | amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine TERM 155 262747 - 262769 + G 70 -9 -3.89346 | overlap 262724 262749 CCGCCCGCGCCGCGC TGGCGCCGGG CAG CCAGGCGCTG TTTGTCGCCTGCACC TERM 156 262749 - 262767 + G 71 -11.6 -3.53733 | overlap 262724 262747 GCCCGCGCCGCGCTG GCGCCGGG CAG CCAGGCGC TGTTTGTCGCCTGCA Pden_0284 262191 - 262934 + | Asp/Glu racemase Pden_0285 262931 - 263887 + | threonine dehydratase Pden_0286 263884 - 264861 + | ornithine cyclodeaminase Pden_0287 264873 - 266054 + | peptidase M24 Pden_0288 266068 - 267069 + | succinylglutamate desuccinylase/aspartoacylase TERM 157 268118 - 268148 + G 82 -14.6 -3.48276 | CGCGCGCCTGTTGAC CGGCGGTGCCCGCG ATC CGCAGGGACCGCTG TTCTATCGCCCGACC Pden_0289 267066 - 268517 + | succinate-semialdehyde dehydrogenase (NAD(P)(+)) TERM 158 269198 - 269147 - g 86 -10 -4.60487 | gap 1, opp_overlap 269148 269162 269192, overlap 269113 269148 269151 GATGAGCTGGAAAAA CTGA-TCGCCGCCGAGGGCGCCGAC ACC ATCGCCGCCTTCATCGGCGAGCCTG TGCTGGGCACGGGCG TERM 159 269193 - 269151 - g 75 -16.2 -2.84171 | opp_overlap 269148 269162 269192, overlap 269113 269148 269147 AGCTGGAAAAACTGA TCGCCGCCGAGGGCGCCGAC ACC ATCGCCGCCTTCATCGGCGA GCCTGTGCTGGGCAC TERM 160 269686 - 269700 + G 75 -8.5 -4.15044 | CGAACTGGTCCGCGA CCGCG ACACG CGCGG TTTCTTCGACGCGGC Pden_0290 268517 - 269887 + | hypothetical protein Pden_0291 269891 - 271033 + | alcohol dehydrogenase Pden_0292 272245 - 271049 - | hypothetical protein Pden_0293 272990 - 272403 - | hypothetical protein Pden_0294 275105 - 273336 - | hemolysin-type calcium-binding region Pden_0295 275682 - 276158 + | MarR family transcriptional regulator Pden_0296 278148 - 276190 - | TonB-dependent receptor TERM 161 278176 - 278196 + r 72 -6.8 -4.27316 | TTCCGGGGAAGGCTG GCTGAGGC GCGGG GCCTTGGC TTTTCCATTGCCGGA Pden_0297 279009 - 278251 - | ABC transporter related Pden_0298 279965 - 279006 - | transport system permease protein TERM 162 279862 - 279833 - G 78 -10 -4.12188 | overlap 279850 GCAGCAGGCCCAAAA GCTTCTTGCCGC GAAACG GCAGCACGAAGC CCCAGTTGCCGCGCG Pden_0299 280911 - 279955 - | transport system permease protein TERM 163 280620 - 280576 - G 71 -10.7 -3.59979 | gap 2, opp_overlap 280575, overlap 280554 GCCCGCCATGGCAAA GC-CCGCGC-CGGCGGCCATC TTGGC GATGACCGGCGCGCCCGGCGC GACCAGCGTCATCAC Pden_0300 281818 - 280913 - | periplasmic binding protein Pden_0301 282034 - 283434 + | L-seryl-tRNA(Sec) selenium transferase Pden_0302 284342 - 283449 - | LysR family transcriptional regulator Pden_0303 284436 - 284876 + | transmembrane pair domain-containing protein Pden_0304 285757 - 284873 - | LysR family transcriptional regulator TERM 164 285063 - 285041 - G 75 -9.8 -4.0098 | overlap 285038 CTCGAAGCGAAAGAA GCGCGGCG TCAGCAG CGCCACGC CGTAACCTTCCAGCG TERM 165 285223 - 285239 + g 72 -3.5 -4.57569 | TCAGCAGGTCGGCCG GCTCGCG CAA CTCGTGC TTTTTCGCCAGCTCG TERM 166 285900 - 285922 + G 72 -6.8 -4.24948 | overlap 285904 GCGCCAGCGTCCCTT CCTGCCGGGC CTG GCCCGGTTGC TTTTCGGTGTGCTGC TERM 167 285904 - 285918 + G 78 -12.8 -3.70676 | overlap 285900 CAGCGTCCCTTCCTG CCGGGC CTG GCCCGG TTGCTTTTCGGTGTG Pden_0305 285838 - 286125 + | hypothetical protein TERM 168 286170 - 286127 - T 72 -10.9 -3.53811 | gap 1 GTCACCTGTGGTAAA CCGCCCTGCCGCGCGTCCCT AAGCG ACGGGCGCGAGGCAAG-CGG ATGGACTGGGGATGG TERM 169 286492 - 286525 + T 100 -18.2 -4.72497 | opp_overlap 286494 286497, overlap 286494 ATGCCGCCAGCACAT GACAAGCCCCGGCC GTTCCA GGCCGGGGCTTGTA TTTTCTTGATCAGTC TERM 170 286494 - 286523 + T 100 -20.8 -3.97413 | opp_overlap 286494 286497, overlap 286492 GCCGCCAGCACATGA CAAGCCCCGGCC GTTCCA GGCCGGGGCTTG TATTTTCTTGATCAG TERM 171 286523 - 286494 - T 100 -20.8 -2.66316 | opp_overlap 286494 286492, overlap 286497 GCCGCCAGCACATGA CAAGCCCCGGCC GTTCCA GGCCGGGGCTTG TATTTTCTTGATCAG TERM 172 286520 - 286497 - T 91 -16.7 -3.484 | opp_overlap 286494 286492, overlap 286494 GCCAGCACATGACAA GCCCCGGCC GTTCCA GGCCGGGGC TTGTATTTTCTTGAT Pden_0306 288052 - 286535 - | hypothetical protein TERM 173 287718 - 287756 + g 74 -11.7 -3.73068 | overlap 287719 GAGCCGATGGCGGCC G-TGGCCAGCGCGGGGCCG CCG CGGCCCT-TGCGGGCCATC TTGTTGCCTTCCAGC TERM 174 287719 - 287754 + g 82 -15.4 -3.44686 | gap 1, overlap 287718 AGCCGATGGCGGCCG TGGCCAGCGCGGGGCCG CCG CGGCCCT-TGCGGGCCA TCTTGTTGCCTTCCA TERM 175 287964 - 287914 - G 88 -13.1 -4.26076 | gap 1 TGACGGGCAGCAAAA GCGCCACGGTCAGCG-CCGGGCCG ATGC CGGGCAGGACGCCGACGGCGGTGC CCAGCGTCACGCCGA Pden_0307 288550 - 288056 - | putative tricarboxylic transport membrane protein Pden_0308 289488 - 288547 - | hypothetical protein Pden_0309 290758 - 289661 - | periplasmic iron-binding protein TERM 176 290174 - 290152 - G 73 -9.8 -3.86524 | AGATGCCGGGATAAA GCTCCTGGTC GCG GGCCAGGAAC AGATAGCCCACGCCC TERM 177 290471 - 290459 - G 72 -6.9 -4.2558 | CATGGCCGAGGAAAA GGCGA AAT CCGCC GTGCCTCCGCCCGCC TERM 178 290808 - 290779 - H 70 -13.6 -2.57881 | overlap 290778 CAACCCGTTCACAAG CCCGCGCCGC-GCC GCTA GGCTGCGG-GCGGG AGAGGGAAAGCATGC Pden_0310 290820 - 291491 + | two component transcriptional regulator TERM 179 292898 - 292885 - g 75 -4.5 -4.65916 | CTCAGCGCAAGAAAA TGCCG GCAT CGACA CGGAACCCTTGCAAT Pden_0311 291488 - 292918 + | integral membrane sensor signal transduction histidine kinase TERM 180 293080 - 293069 - g 73 -7.2 -4.10437 | opp_overlap 293076 GCAGCAAGGAAACAA CCCG TCCG CGGG GGGCTCGACGAATGG TERM 181 293192 - 293216 + G 100 -12.1 -4.84527 | overlap 293195 ATGGCAGACGACCGG GACCGTCGGCG GCA CGCTGACGATC TTTTTCATCTGTGCC Pden_0312 293052 - 294146 + | hypothetical protein TERM 182 294169 - 294194 + F 100 -16.1 -4.81551 | opp_overlap 294161, overlap 294162 CAAGCGACGCGGAAC GGCCGCTGCCT TTCG GGGCGGCGGCC TTTTTGCTATCCCTG TERM 183 294592 - 294607 + G 75 -6 -4.46212 | opp_overlap 294551 ATGAGGCGCTGGCAA GCGGCG CTTA CGACGC TTTTGTCATGACCGA TERM 184 294706 - 294681 - g 72 -6 -4.28548 | opp_overlap 294694, overlap 294682 ACCTATGCAGGAAAA TGGGCGGCCG AGGCGG CGGCCGGCAA TCCGGCCGGGCAGAT Pden_0313 294237 - 295178 + | hypothetical protein TERM 185 295615 - 295627 + G 70 -9.1 -3.86015 | overlap 295614 GTTCGTGGCGGTGAC GACCG TGC CGGTC TTTCTGCGCGCGCTG TERM 186 295653 - 295667 + G 71 -11.4 -3.64703 | CGCTGGCGGCGGCGG GCTCGG CGA CCGAGC TTTGGCTGGCGGCGA Pden_0314 295262 - 295834 + | AmiS/UreI transporter Pden_0315 297919 - 295835 - | oxidoreductase domain-containing protein TERM 187 296992 - 297003 + g 81 -7.2 -4.5442 | TGGCGCGGAAGCTTA GCCC ATAG GGGC TTTTCTGGTTCAGCG TERM 188 297576 - 297592 + g 77 -15.1 -3.14647 | CCCAACTGGCGGCCG GCGGCCG TGG CGGCCGC TTCCATCTCGTCGAT Pden_0316 298891 - 297929 - | glycosyl transferase family protein Pden_0317 300166 - 298982 - | CBS domain-containing protein Pden_0318 300927 - 300271 - | GntR family transcriptional regulator TERM 189 301109 - 301119 + H 78 -4 -4.79955 | opp_overlap 301107, overlap 301107 TGCTTCATGAACATG TTGT TCA ACAA TTTTGTTATGAGTGT TERM 190 301246 - 301273 + G 74 -11.2 -3.72695 | gap 1, overlap 301247 CCGTCACCTCCCCCT CTGCCGC-CTCGG CTG CCGCGCGCGGCGG TTTCATGGCGGCGAT Pden_0319 301221 - 302456 + | hypothetical protein Pden_0320 302525 - 303298 + | LamB/YcsF family protein Pden_0321 303295 - 304086 + | hypothetical protein TERM 191 304664 - 304691 + G 70 -8.2 -3.85698 | CCGCGACCCGCCCGC GCTGCTGCGCCC CGGT GTGCGCTGCCGC TTTGTGGCGCGCCGG TERM 192 305412 - 305365 - g 71 -10.7 -3.55444 | gap 3, overlap 305347 305366 TGGTGACGCCGCAAA GCTCGCGCGT--CGGCATCCGCCT GCA AGGCG-ATGCGGTGACGCGCGAGG ATGCGGTCGAGCTGC Pden_0322 304074 - 305642 + | allophanate hydrolase subunit 2 TERM 193 305870 - 305917 + G 79 -15.4 -3.25823 | opp_overlap 305865 305868 GCCGGCAAGATCATC GCCATCGCCCGGGCGGCCGGCG CCGA TGCCATCCATCCGGGCTATGGC TTCCTGTCCGAGCGC Pden_0323 305639 - 307405 + | carbamoyl-phosphate synthase L chain, ATP-binding TERM 194 307523 - 307544 + G 72 -9.4 -4.06384 | gap 1, overlap 307520 307532 307539 CCTGACCTCTGCGCT GGCCGC-CC TGGGC GGCGCGGCC TTTCTGCTGTTGCAC Pden_0324 307485 - 308516 + | putative ammonia monooxygenase Pden_0325 308566 - 309129 + | hypothetical protein Pden_0326 310213 - 309179 - | luciferase family protein TERM 195 309397 - 309383 - G 73 -10 -3.85698 | opp_overlap 309383 GGTTTCCTCGATAAA GCCGAT CTG ATCGGC TTCCTTGCCGCCGCG Pden_0327 311184 - 310210 - | LysR family transcriptional regulator TERM 196 311749 - 311725 - g 86 -6.3 -5.00616 | overlap 311726 311727 CGCCTTGGGAAAAAA GCCCGGTGCCG GCG CAGCACCAGAT CCACGGGCTGGGGCC Pden_0328 311304 - 312248 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 197 312270 - 312295 + F 100 -16.1 -4.25104 | opp_overlap 312271, overlap 312271 CCCCCTGACGAAACA AGGCCGCCGGA GCGA TCCGGCGGCCC TTTTCATGCACGCGG TERM 198 312271 - 312294 + F 93 -19.6 -3.14848 | opp_overlap 312271, overlap 312270 CCCCTGACGAAACAA GGCCGCCGGA GCGA TCCGGCGGCC CTTTTCATGCACGCG TERM 199 312294 - 312271 - f 100 -19.6 -4.00042 | opp_overlap 312271 312270 CCCCTGACGAAACAA GGCCGCCGGA GCGA TCCGGCGGCC CTTTTCATGCACGCG Pden_0329 312401 - 312802 + | hypothetical protein TERM 200 312809 - 312787 - T 100 -12.7 -4.72272 | CCGGGCCAGGAAAAA GGGGCGATC GAAGT GACCGCCCC TTCCAACTGACTGAT Pden_0330 313427 - 312834 - | NADPH-dependent FMN reductase TERM 201 313325 - 313338 + g 75 -9.5 -4.07568 | CGAAGCTCATGTCGT CGCGC TTTT GCGCG TTTTCCAGCAGCCAG TERM 202 313613 - 313584 - R 100 -17.9 -4.07568 | opp_overlap 313582 313578, overlap 313589 CCGGGCCGCGGAAAA GGAAAGGCGGGCC TTGC GACCCGCCTCTCC GGCTTCTCTGTTCCA TERM 203 313608 - 313589 - R 89 -12.8 -4.19735 | opp_overlap 313582 313578, overlap 313584 CCGCGGAAAAGGAAA GGCGGGCC TTGC GACCCGCC TCTCCGGCTTCTCTG Pden_0331 315213 - 313684 - | glyoxalase/bleomycin resistance protein/dioxygenase Pden_0332 315843 - 315226 - | glutathione S-transferase domain-containing protein trpA 316754 - 315957 - | tryptophan synthase subunit alpha TERM 204 316977 - 316957 - g 72 -6 -4.25283 | overlap 316958 ACGCGTTGACGAAAA CCGCTGCC GCGCA GGCCGCGA ACTTCCCCTTCTGCA TERM 205 317941 - 317962 + G 70 -8.7 -3.92324 | GCAAGTCCTATGAGG TGCAGGACG GCGA CGTGCTGCA TTTCCTGTTCAACGC Pden_0334 316884 - 317981 + | translation-associated GTPase Pden_0335 319441 - 318371 - | phage integrase family protein Pden_0336 319954 - 319640 - | hypothetical protein Pden_0337 320720 - 319992 - | hypothetical protein Pden_0338 321160 - 320717 - | hypothetical protein Pden_0339 322261 - 321356 - | hypothetical protein Pden_0340 322677 - 322258 - | hypothetical protein Pden_0341 325319 - 322674 - | DNA methylase N-4/N-6 domain-containing protein Pden_0342 326441 - 325323 - | DNA polymerase III, beta subunit TERM 206 326515 - 326488 - R 100 -14.1 -5.26316 | overlap 326507 GGATTGCAGAAAAAA GCCCCCGGCCC GAGCAG AAGCCGGGGGC CAGTGAAACCCGGCG Pden_0343 326789 - 326577 - | hypothetical protein Pden_0344 327011 - 327613 + | hypothetical protein Pden_0345 328067 - 328573 + | hypothetical protein Pden_0346 328573 - 329100 + | hypothetical protein Pden_0347 329443 - 329084 - | hypothetical protein TERM 207 329413 - 329399 - G 72 -3.5 -4.66833 | overlap 329409 329411 TCGCAATCCGAAAAA CCATG ACCAA CACGG GCTTTCAGGTTGCCC Pden_0348 329665 - 329997 + | hypothetical protein Pden_0349 329990 - 330304 + | hypothetical protein TERM 208 330338 - 330365 + G 73 -10.4 -3.91352 | overlap 330339 330359 ACGGCAATGCTTATC GCGCGGGCGCCC GTGA GGGCGTCGGCGA TTTCCTTGCCGATCT TERM 209 330447 - 330423 - g 75 -5.5 -4.63527 | opp_overlap 330444, overlap 330424 TGACGACCTGAAAAA GCTGGCCCGCA ACG TGCTGGCCCGG CCGAAATATCGGCGG Pden_0350 330301 - 330513 + | hypothetical protein Pden_0351 331004 - 330675 - | hypothetical protein TERM 210 331550 - 331502 - g 74 -13.3 -3.28712 | gap 3 CCGTGCGCGCGAGAA CTCGATCCGGGCCGCGCGG-GA TATCTGGT TCGCCGC-CGGCCCGG-CCGAG GGCACGCTGGTGCGG TERM 211 331918 - 331932 + G 71 -11.4 -3.56092 | opp_overlap 331903 TGATCATGGCCGAGG GGGTCG AGA CGACCC TTTCCGCCCTGATCG TERM 212 332205 - 332186 - g 81 -3.6 -4.93696 | gap 1 GGCAAAGAGGAAAAA TCCTGGTCT CAT AG-CCAAGA TCGTCCATGCCGGCG Pden_0352 331125 - 332267 + | hypothetical protein TERM 213 333350 - 333340 - g 72 -3.2 -4.62803 | GGAAAGAACAAGAAA TCCG GTT CAGA TTCGCAGCCGGACCT Pden_0353 332260 - 334101 + | P4 family phage/plasmid primase Pden_0354 334449 - 334153 - | hypothetical protein TERM 214 334333 - 334313 - G 71 -2.6 -4.57073 | gap 1, overlap 334314 334317 GACGGGCCTGAAAAA TCG-ACATG CACG CATGCGCGA GAAACAGCGGGGTAA Pden_0355 334560 - 335318 + | hypothetical protein TERM 215 335398 - 335364 - f 70 -13.6 -2.53894 | gap 1, opp_overlap 335365, overlap 335363 ACTATTATCAGGAAT TGCGCCCGC-AGGGA TCACCG TCCCTCGCGGGCGCT TCTGTTTCGGCATAC TERM 216 335365 - 335397 + F 95 -17.8 -3.82202 | gap 1, opp_overlap 335364 335363 CTATTATCAGGAATT GCGCCCGC-AGGGAT CACC GTCCCTCGCGGGCGC TTCTGTTTCGGCATA Pden_0356 335488 - 335838 + | HNH endonuclease Pden_0357 335888 - 336148 + | hypothetical protein Pden_0358 336322 - 336825 + | resolvase domain-containing protein Pden_0359 336815 - 338536 + | phage terminase Pden_0360 338536 - 339873 + | HK97 family phage portal protein Pden_0361 339860 - 340702 + | peptidase S14, ClpP TERM 217 341014 - 340971 - g 73 -13 -3.4252 | overlap 340973 GCTGACCCAGCAGAA GATCCTGACGGACGCCCAGC AGAA GCTGACCGACCGTCTGGAGC AGCTGGAGACGCGCA TERM 218 341012 - 340973 - g 74 -14.2 -3.28447 | overlap 340971 TGACCCAGCAGAAGA TCCTGACGGACGCCCAGC AGAA GCTGACCGACCGTCTGGA GCAGCTGGAGACGCG TERM 219 341437 - 341414 - g 78 -12.4 -3.72576 | opp_overlap 341414 341413 341405 TCTGGGCGCAGGAAA GCGCGCTGGT GCGC ACCATCGCGC ATTTCGTGCATGTGT TERM 220 342005 - 342031 + G 73 -13 -3.53012 | overlap 342006 GCCCGGCCGCGCTGA TCACCGGCGAGT TCA ACTCGACGGTGG TTTCCAGCGGCGCGC Pden_0362 340714 - 342063 + | HK97 family phage major capsid protein Pden_0363 342121 - 342429 + | hypothetical protein TERM 221 342890 - 342866 - gf 93 -19.3 -3.16564 | GGTCGAGGTCATCAA CGCCAGCGCGG TCT CCGCGCTGACG GCCTATCCGAAAATC Pden_0364 342471 - 342965 + | hypothetical protein Pden_0365 342934 - 343482 + | hypothetical protein TERM 222 343697 - 343679 - g 71 -3 -4.56597 | overlap 343681 GCTGGCGGCGAAAAA CCCGGCAA TAC TCACCGTG CGCAACTCAGCACTG Pden_0366 343476 - 343835 + | phage head-tail adaptor, putative Pden_0367 343922 - 344218 + | hypothetical protein Pden_0368 344742 - 344215 - | hypothetical protein TERM 223 344261 - 344295 + g 73 -7.8 -4.11906 | opp_overlap 344261 ATTAGCGCCTCAAAG GCTGGATCTTCCGGGT ATT GCGCGGAATATCTGGC TTCTTTGTAGGTTGT Pden_0369 344752 - 345042 + | hypothetical protein TERM 224 345210 - 345192 - f 70 -5.2 -4.34402 | overlap 345196 GCGCCCAGAGGAAAA CCGAGC CGGCATT GCCCGG CGCTATCAGCAAGGA Pden_0370 345234 - 345695 + | hypothetical protein Pden_0371 345695 - 346084 + | hypothetical protein Pden_0372 346245 - 349151 + | hypothetical protein TERM 225 349510 - 349550 + G 72 -8.2 -4.04206 | gap 1, opp_overlap 349508 AGCGGGCACGCAACC GCT-GCTGACCTCGGCTGC GGTC GCGGCCGGGGACAATGAGC TTTATGTGGACCTGA Pden_0373 349151 - 349831 + | hypothetical protein Pden_0374 349828 - 350394 + | hypothetical protein Pden_0375 350379 - 350750 + | hypothetical protein Pden_0376 350750 - 352792 + | hypothetical protein TERM 226 352817 - 352836 + F 100 -12.8 -4.8048 | AATCCAGCAGACGGC GGCGGTCC AGAT GGGCCGCC TTTTTCATGTGAGGC TERM 227 353023 - 353036 + G 79 -8.1 -4.4078 | overlap 352985 GTCGGCGCTGGTCCC TGCGC TGTC GCGCA TTTTCGTTACCGAGG TERM 228 354227 - 354196 - g 72 -13.8 -3.16564 | GGGCTATGGCACCAA CGATATCCGCGACA TTCC TGCCGGGGATATCG AGGACCGTATCCATG Pden_0377 352856 - 354613 + | hypothetical protein Pden_0378 354623 - 355363 + | hypothetical protein TERM 229 355497 - 355473 - g 70 -12.1 -3.36749 | TATCGTCAAGATCAA GACCAGCGCGA GCC TCGGGCCGGTC AAGGTGATCACCTCA Pden_0379 355399 - 355695 + | hypothetical protein Pden_0380 355959 - 355711 - | hypothetical protein TERM 230 355967 - 355983 + H 100 -10.8 -5.14563 | AACCCCATCTGACCG CCCCGC CTCGC GCGGGG TTTTTTCATGGAGAG TERM 231 356029 - 356060 + G 75 -10 -4.08945 | gap 1, opp_overlap 356022 356021, overlap 356021 356055 TCATGAACGCGGTGC GCGCGCGGCAGGCGC GCT GCGCC-GCCCTGGGC TTTTGGCCCGGTCCT Pden_0381 356004 - 356636 + | hypothetical protein Pden_0382 356648 - 357043 + | hypothetical protein Pden_0383 357364 - 357161 - | hypothetical protein Pden_0384 357928 - 357761 - | hypothetical protein Pden_0385 359285 - 358047 - | recombinase TERM 232 359018 - 359038 + g 78 -8.2 -4.36914 | opp_overlap 359022, overlap 359019 TGCAGAAATCCCGCA ACGACCGC GACAG GCGGTCGA TTTTGTAGACCACGA TERM 233 359228 - 359205 - G 82 -11 -4.12188 | GTAGGAGGCGCAAAA GGATCGCTGA TTTT CCAGCGACCC GAACTCGGCGCCGGC TERM 234 359392 - 359425 + H 100 -13.8 -4.81249 | gap 1, overlap 359393 359393 TGCCTGGCGCCCATT TGCCC-CCGTCCCGG TTCGC CCGGGGCGGGGGGCC TTTTTGCGTTTCGGG TERM 235 359393 - 359423 + H 84 -17.5 -2.68093 | overlap 359392 359393 GCCTGGCGCCCATTT GCCCCCGTCCCGG TTCGC CCGGGGCGGGGGG CCTTTTTGCGTTTCG TERM 236 359393 - 359424 + H 93 -17.3 -3.48026 | gap 1, overlap 359393 359392 GCCTGGCGCCCATTT GCCC-CCGTCCCGG TTCGC CCGGGGCGGGGGGC CTTTTTGCGTTTCGG Pden_0386 359492 - 360115 + | hypothetical protein Pden_0387 360185 - 360424 + | hypothetical protein Pden_0388 360445 - 360705 + | hypothetical protein TERM 237 360706 - 360742 + F 77 -12.4 -3.65224 | gap 1, opp_overlap 360712 360713, overlap 360712 360713 ATCGCGGCGCCCTAG GTT-AAATGGCCGGACC CGAA GGCCCGGCCGTTTCAAC TTGTTCACATGCACT TERM 238 360735 - 360712 - f 74 -11.6 -3.59979 | opp_overlap 360706 360712 360713, overlap 360713 GCGCCCTAGGTTAAA TGGCCGGACC CGAA GGCCCGGCCG TTTCAACTTGTTCAC TERM 239 360712 - 360735 + F 77 -11.6 -3.72051 | opp_overlap 360712 360713, overlap 360706 360713 GCGCCCTAGGTTAAA TGGCCGGACC CGAA GGCCCGGCCG TTTCAACTTGTTCAC TERM 240 360734 - 360713 - f 75 -15.1 -2.75844 | opp_overlap 360713 360712 360706, overlap 360712 CGCCCTAGGTTAAAT GGCCGGACC CGAA GGCCCGGCC GTTTCAACTTGTTCA Pden_0389 361152 - 361484 + | hypothetical protein TERM 241 361801 - 361814 + G 72 -5.2 -4.44046 | overlap 361795 361794 GGGCTTTATCGGGCT GCCG ATGGCC CGGC TTTCTTTACCATGAC Pden_0390 361651 - 362016 + | hypothetical protein Pden_0391 362717 - 362346 - | hypothetical protein Pden_0392 362922 - 363236 + | hypothetical protein Pden_0393 363233 - 363715 + | hypothetical protein TERM 242 363983 - 363965 - f 74 -11 -3.61398 | CTCGGGGCGTAACAA TGCCCGCA CAG TGCGAGCA GACCGGCCTGTCGGC Pden_0394 364225 - 364824 + | hypothetical protein Pden_0395 365115 - 365942 + | diaminopimelate epimerase Pden_0396 365939 - 367201 + | MiaB-like tRNA modifying enzyme TERM 243 367721 - 367733 + G 73 -10.5 -3.87815 | GGTGCTGGCGGGCGA GGCGC CCA GCGCC TTTGTCGCCATGCGA Pden_0397 367359 - 368318 + | histone deacetylase superfamily protein Pden_0398 368315 - 368557 + | exodeoxyribonuclease VII, small subunit Pden_0399 368557 - 369420 + | polyprenyl synthetase Pden_0400 369446 - 371368 + | 1-deoxy-D-xylulose-5-phosphate synthase Pden_0401 371378 - 371998 + | SH3 type 3 domain-containing protein Pden_0402 372858 - 371995 - | NAD-dependent epimerase/dehydratase Pden_0403 373841 - 372855 - | luciferase family protein Pden_0404 373937 - 375421 + | AMP nucleosidase Pden_0405 375573 - 375872 + | histone family protein DNA-binding protein TERM 244 375896 - 375916 + F 84 -14 -3.6471 | opp_overlap 375893 TTCGCCGCACAAGGG GCCGCGCA TGACC TGCGCGGC TTCTCTCGTTTCGGG Pden_0406 376017 - 376937 + | hypothetical protein Pden_0407 377485 - 376892 - | glutathione S-transferase Pden_0408 377546 - 378247 + | helix-turn-helix, type 11 domain-containing protein Pden_0409 379646 - 378225 - | aminotransferase, class V Pden_0410 379720 - 380193 + | AsnC family transcriptional regulator TERM 245 380250 - 380263 + G 76 -8.1 -4.36914 | overlap 380248 TTCCATCCTGTTCCC GACCG AGGC CGGTC TTTTCTGCCCCGAGG Pden_0411 380224 - 381213 + | putative exonuclease protein involved in mRNA processing Pden_0412 381210 - 382754 + | ATP dependent DNA ligase TERM 246 383974 - 383993 + G 72 -3.4 -4.57569 | overlap 383967 GACTGCCTGCGCCGC GCCCTTCG ATGC CGATGCGC TTTTTGCCGAGGTCG TERM 247 384512 - 384542 + G 77 -14.6 -3.19602 | overlap 384509 TGGCTGGATTTGCAG GCCCAGGTCTCGGC CCT GCCGGAACCGGGGC TGTTGCTGTCGGAAA Pden_0413 382751 - 385186 + | DEAD/DEAH box helicase domain-containing protein TERM 248 385759 - 385802 + G 87 -20.2 -3.05963 | GATCCGGCGCTGGCG GCGCTGGTGCCGCAGGGGCT GGCG ATCGCCTGCGGCGCCCGCGC TATTGCCCTGCCGCT Pden_0414 385183 - 385839 + | putative metallo-phosphoesterase TERM 249 385865 - 385847 - T 100 -13.8 -4.72272 | opp_overlap 385846 385840 GGTCGTGACGAAAAA GGGCCGCC CAA GGCGACCC CTTTCCGTTCGTGGA Pden_0415 386668 - 385901 - | outer membrane protein gyrB 389318 - 386880 - | DNA gyrase subunit B Pden_0417 389840 - 389505 - | hypothetical protein era 390744 - 389833 - | GTP-binding protein Era TERM 250 390061 - 390073 + g 83 -4.7 -4.91109 | overlap 390043 GATCTGGTCCACCCG GGCCG AGC CGTCC TTTTTCTCCTCCCAG Pden_0419 391466 - 390741 - | ribonuclease III TERM 251 391440 - 391466 + g 82 -13.6 -3.74526 | overlap 391441 CTTCATGTGCCGATC CTGCCACGGCGC GGG GCGCCGCGGCAA TTCTTCCCTTAGTCC TERM 252 391441 - 391465 + g 80 -17.1 -2.84234 | overlap 391440 TTCATGTGCCGATCC TGCCACGGCGC GGG GCGCCGCGGCA ATTCTTCCCTTAGTC Pden_0420 392266 - 391475 - | signal peptidase I acpS 392745 - 392326 - | 4'-phosphopantetheinyl transferase Pden_0422 393528 - 392794 - | pyridoxal phosphate biosynthetic protein PdxJ Pden_0423 394380 - 393559 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Pden_0424 396312 - 394384 - | TPR repeat-containing protein TERM 253 394728 - 394768 + g 75 -8.9 -4.1899 | CGTCGTCCGGGCGCA GCTCGACCGCGCGCTGG ATCAGCG CCAGCGCCTCGTCCAGC TTTTCGCTGCGGTCC TERM 254 395933 - 395883 - G 71 -11.2 -3.53563 | opp_overlap 395917 395919 ACATGGTGCCGGAAA GCGCGGCGG-CACGCTCCATCTCG CCGGC CGAGATC-AGCGCGACCAGCGCGC TGTCTTGCAGGAAGG Pden_0425 397955 - 396309 - | electron-transferring-flavoprotein dehydrogenase TERM 255 398141 - 398183 + H 76 -9.7 -4.08853 | gap 2, overlap 398142 ATGCCTTTCGGATTT TCAG-CGG-GCGCCCCCGGCC GAT GGCCGGGGGCGTTCCAACAGC TTGTTTCGTGTTGAC TERM 256 398142 - 398182 + H 72 -13.2 -3.04589 | gap 2, overlap 398141 TGCCTTTCGGATTTT CAG-CGG-GCGCCCCCGGCC GAT GGCCGGGGGCGTTCCAACAG CTTGTTTCGTGTTGA Pden_0426 398232 - 398702 + | transcription elongation factor GreA TERM 257 398791 - 398833 + G 71 -2.5 -4.56597 | gap 1, opp_overlap 398761, overlap 398792 GCTGATGATCGGCGC GGCGGTCGGCTTGGCCTGGC TGGT GCT-GGTCGGGCTGTTCGCG TTTTTCGGCCCCGAG Pden_0427 398720 - 399667 + | hypothetical protein Pden_0428 400251 - 399664 - | GCN5-related N-acetyltransferase TERM 258 400072 - 400015 - G 70 -8.8 -3.85817 | gap 1, opp_overlap 400064 ATGGGGGGCGAGAAA GCCGCCGCCCGCGTCGCG-CAGCCCGG CCATC CCGACCAGCCGCCCCGAGGGCGCCAGC GCCACCAGCGCCTGT TERM 259 400742 - 400778 + G 70 -12.4 -3.28712 | CCTGGATCGCCTATG TGCTGG-TCGACCAGAGC TAT GCGCTGG-CGATCCAGCA TTATGAAAAGCACCC Pden_0429 400357 - 401133 + | AzlC family protein Pden_0430 401130 - 401462 + | branched-chain amino acid transport Pden_0431 402094 - 401447 - | hypothetical protein Pden_0432 402318 - 402118 - | aa3 type cytochrome c oxidase subunit IV Pden_0433 403354 - 402332 - | beta-lactamase domain-containing protein TERM 260 402532 - 402548 + g 72 -13.7 -3.14564 | CTTCCAGCATCCGAT CCAGCGC GGC GCGCTGG TTGGTGGCCAGCTGG Pden_0434 405042 - 403351 - | acyl-CoA dehydrogenase domain-containing protein TERM 261 403875 - 403840 - G 72 -15.4 -2.87132 | GGTTTCCTCGATATA GCCCATGCCGCCATGC ACCT GCACGGCGGTATCGGC GACGCGGATGCCGAC Pden_0435 405159 - 406109 + | Sua5/YciO/YrdC/YwlC family protein Pden_0436 406685 - 406113 - | hypothetical protein Pden_0437 406794 - 407576 + | hypothetical protein Pden_0438 408388 - 407573 - | phage SPO1 DNA polymerase-related protein TERM 262 408358 - 408331 - G 93 -13.4 -4.13767 | gap 1, opp_overlap 408332 CCTGCCATTGCAAAA GCGCCAG-CGCCG TTT CGGCGTCCAGCGC GAATCCCCTGTAGGT Pden_0439 408895 - 408494 - | hypothetical protein Pden_0440 409050 - 410171 + | 3-isopropylmalate dehydrogenase TERM 263 411087 - 411116 + G 73 -12.7 -3.53012 | overlap 411088 411114 GAGCGGTTGGGCGCC TCGCGCCTGCGCC CGGC GACGCGGGCGCGC TTTGGCGGCGAGGCG TERM 264 411088 - 411115 + G 74 -16.2 -2.71712 | overlap 411087 411114 AGCGGTTGGGCGCCT CGCGCCTGCGCC CGGC GACGCGGGCGCG CTTTGGCGGCGAGGC Pden_0441 410232 - 411185 + | hypothetical protein Pden_0442 411827 - 412228 + | hypothetical protein Pden_0443 412240 - 412752 + | hypothetical protein Pden_0444 412764 - 413840 + | hypothetical protein Pden_0445 414070 - 414585 + | hypothetical protein TERM 265 414777 - 414833 + F 100 -21 -3.15544 | opp_overlap 414784, overlap 414784 TGCCGGTCTCAGAGC CAGCGAAGGCGAGAAGCGCGGAGA CCTCAACTA TCGCAGCGGTTCTCGCCTTCGCTG TTACTGCCAGTGACG TERM 266 414873 - 414859 - f 79 -2.7 -4.99035 | opp_overlap 414862 414868 414869, overlap 414860 TGACGGAGACAAAAA GGGCG GTAAG CGGCC GTTCGCTGCATTGTG TERM 267 414868 - 414901 + F 81 -13.9 -3.53224 | gap 1, opp_overlap 414859 414860, overlap 414862 414869 CAAAAAGGGCGGTAA GCGGCCGTTCGCTGCA TTG TGC-GCGAATGGCCGG TTTAGAGAGCCCCTG TERM 268 414869 - 414900 + F 84 -17.4 -2.71791 | gap 1, opp_overlap 414859 414860, overlap 414862 414868 AAAAAGGGCGGTAAG CGGCCGTTCGCTGCA TTG TGC-GCGAATGGCCG GTTTAGAGAGCCCCT Pden_0446 415141 - 416178 + | zinc finger, CHC2-family protein Pden_0447 416175 - 419363 + | hypothetical protein Pden_0448 419360 - 420268 + | hypothetical protein Pden_0449 420268 - 421179 + | exonuclease, RNase T and DNA polymerase III Pden_0450 421986 - 421270 - | hypothetical protein Pden_0451 422515 - 421964 - | hypothetical protein Pden_0453 423761 - 423504 - | hypothetical protein Pden_0454 424588 - 423758 - | hypothetical protein Pden_0455 424675 - 424929 + | helix-turn-helix domain-containing protein Pden_0456 425816 - 425445 - | hypothetical protein TERM 269 425758 - 425721 - G 79 -5 -4.75308 | gap 2, opp_overlap 425723 425726, overlap 425727 ATGAAGAGCTAAAAA GCGAAAGGCTCCGAAAGC GCCA ACTTTCAGAGCCC-T-GC TTAGGTTTACCGAAT TERM 270 425754 - 425727 - G 83 -12.8 -4.00407 | opp_overlap 425726 425723, overlap 425721 AGCTAAAAAGCGAAA GGCTCCGAAAGC GCCA ACTTTCAGAGCC CTGCTTAGGTTTACC Pden_0457 425929 - 426456 + | hypothetical protein Pden_0458 426466 - 428598 + | integrase catalytic subunit Pden_0459 428588 - 429586 + | transposition protein, putative TERM 271 430109 - 430052 - g 74 -12 -3.59979 | gap 3, opp_overlap 430053, overlap 430053 GCCTTTGATTCCAAA GCTGGTCGCAGCTCGGGCGG-CGCCCTGG CAA CCAGGTCGACCGACCGCGCTG-GAGCA-C TATATCACTGAGAGG Pden_0460 429588 - 431069 + | hypothetical protein Pden_0461 431234 - 432751 + | integrase catalytic subunit Pden_0462 432748 - 433326 + | IstB ATP binding domain-containing protein Pden_0463 433296 - 434282 + | recombinase TERM 272 434626 - 434577 - g 73 -7.7 -4.2018 | gap 1, opp_overlap 434616 AAAGCGCCAAAAGAA TGACCGGGCGGA-TGCTGAGGCCA TCG CGGAGGCAGCCCTCCGCCCGACCA TGCGGTTCGTGGCGG Pden_0464 434326 - 435324 + | transposase IS116/IS110/IS902 family protein TERM 273 436442 - 436425 - g 77 -4.1 -4.72272 | CCGGGTCAGGAAAAA GCACCAC GCTC ATGATGC TCGCCGGGTTTGAGC Pden_0466 436286 - 437371 + | ABC transporter related Pden_0467 437384 - 438448 + | putative spermidine/putrescine-binding protein TERM 274 438583 - 438593 + G 71 -2.4 -4.54047 | overlap 438563 CTGGCATTTCTGATG CCGC TGG GAGG TTTTCTCTGGCGTGC Pden_0468 438445 - 439695 + | binding-protein-dependent transport systems inner membrane component Pden_0469 439692 - 440477 + | binding-protein-dependent transport systems inner membrane component Pden_0470 440577 - 441365 + | GntR family transcriptional regulator TERM 275 441374 - 441395 + F 75 -7.9 -4.26188 | opp_overlap 441369 TCTCTGAAGACCCGA GCCGCGGTT GACG ATTCGCGGC TTTTGCATCTCTGGC TERM 276 441871 - 441831 - g 70 -14.8 -2.77899 | gap 2, overlap 441828 GCCGCGGATCAAGCA GGCCACCGGCGCGGTGCTGA ACA TCACCACCG-GC-GGCGGCC TTGGCATGACGCTGG Pden_0471 441610 - 442539 + | hypothetical protein Pden_0472 442556 - 444619 + | 5-oxoprolinase (ATP-hydrolyzing) Pden_0473 444631 - 446397 + | hydantoinase B/oxoprolinase fabG 446394 - 447158 + | 3-ketoacyl-(acyl-carrier-protein) reductase Pden_0475 447146 - 447538 + | hypothetical protein Pden_0476 447538 - 447990 + | thioesterase superfamily protein Pden_0477 448044 - 448658 + | XRE family transcriptional regulator Pden_0478 448844 - 450010 + | protein of unknown function DUF1100, hydrolase family protein Pden_0479 450007 - 450780 + | short-chain dehydrogenase/reductase SDR TERM 277 450757 - 450799 + F 86 -15.5 -3.21099 | gap 1 CTTCTGGCCGATGAG GGCCTGTCCGCCGCGATCGG CTGA TCGTTCGCGG-GGTCGGGCC TTGATCCTGCGACAC Pden_0480 450916 - 452154 + | major facilitator transporter Pden_0481 452849 - 452349 - | hypothetical protein Pden_0482 453006 - 453269 + | SpoVT/AbrB domain-containing protein Pden_0483 453266 - 453667 + | PilT domain-containing protein TERM 278 454486 - 454470 - f 84 -8.7 -4.57073 | CACTTCTTGCAAAAA GTAACCC GAT GGGCTAC ATGTGGGCATGCAGA TERM 279 454804 - 454776 - g 78 -8.9 -4.2558 | gap 2, overlap 454777 GACCCCGGATGAAAA GCGCACTGTGGCC GCGCT GGCCAC-G-GCGC TGAAGGCTGCATGGA Pden_0484 454495 - 454833 + | RelE-like cytotoxic translational repressor of toxin-antitoxin stability system Pden_0485 454815 - 455108 + | XRE family transcriptional regulator Pden_0486 455218 - 455601 + | hypothetical protein Pden_0487 456088 - 455768 - | hypothetical protein TERM 280 456161 - 456182 + r 74 -12.9 -3.2794 | opp_overlap 456162, overlap 456162 TCAGCGGAAACCGAA ACGGGGGCC TTTC GGCCCCCGC TTCCTGTCACTCGGC TERM 281 456162 - 456181 + r 81 -16.4 -2.5655 | opp_overlap 456162, overlap 456161 CAGCGGAAACCGAAA CGGGGGCC TTTC GGCCCCCG CTTCCTGTCACTCGG TERM 282 456181 - 456162 - R 93 -16.4 -3.85165 | opp_overlap 456162 456161 CAGCGGAAACCGAAA CGGGGGCC TTTC GGCCCCCG CTTCCTGTCACTCGG Pden_0488 460739 - 456189 - | glutamate synthase (ferredoxin) TERM 283 456982 - 456950 - G 81 -12 -3.83998 | overlap 456978 TGACCGCATAGGAAA GCTGCATCTTCTCG CCATC CGAGAAGAAGCGGC CGGCGTCGCGGATGA Pden_0489 461500 - 460736 - | hypothetical protein TERM 284 461161 - 461127 - G 70 -8.5 -3.89215 | GTCCAGAAATCGAAA TCGTCCTGCCCGCTA TCCAG CAGCGTGCTGAACGA GGCGTGGTCCTGCGC Pden_0490 463006 - 461513 - | putative oxidoreductase TERM 285 463086 - 463072 - R 79 -4.2 -4.93877 | opp_overlap 463071 CGTCATCAAAGAAAA GTCAGC TAT GTTGAC CTAATTAACGATTTT Pden_0491 463960 - 463157 - | undecaprenyl pyrophosphate phosphatase Pden_0492 464952 - 463960 - | NAD-dependent epimerase/dehydratase Pden_0493 466581 - 464983 - | glucose-methanol-choline oxidoreductase TERM 286 467016 - 466979 - H 100 -27.3 -3.96148 | opp_overlap 466984 467005, overlap 466984 CCTGGGCACCATAAA CAAAAGCCGCGCAAACC CTTG GGTTTGCGCGGCTTTTG CGTTGCGATGACCGC TERM 287 467011 - 466984 - H 100 -21.4 -5.02323 | opp_overlap 466984 467005, overlap 466979 GCACCATAAACAAAA GCCGCGCAAACC CTTG GGTTTGCGCGGC TTTTGCGTTGCGATG TERM 288 466984 - 467011 + H 100 -21.4 -4.2803 | opp_overlap 466984 466979, overlap 467005 GCACCATAAACAAAA GCCGCGCAAACC CTTG GGTTTGCGCGGC TTTTGCGTTGCGATG Pden_0494 467184 - 467624 + | NUDIX hydrolase Pden_0495 468904 - 467633 - | response regulator receiver protein Pden_0496 469024 - 469374 + | Hpt protein Pden_0497 470620 - 469382 - | threonine dehydratase Pden_0498 471541 - 470699 - | hypothetical protein TERM 289 470970 - 470938 - G 73 -12 -3.41051 | gap 1 TGAGCGGCAGGACAA GTGCCGCCGACCGCA GGGC TGCG-CCGCCGGCAC CGGCCAGCATCTGCA Pden_0499 471591 - 472817 + | argininosuccinate synthase TERM 290 472864 - 472842 - f 77 -11.9 -3.60627 | opp_overlap 472842 TCATTCCATGCCAAA GGCCGCGGG CAAGT CCTGCGGCC TTTCTTGCTGGCCGC TERM 291 472842 - 472864 + F 100 -14.1 -4.24342 | opp_overlap 472842 TCATTCCATGCCAAA GGCCGCGGG CAAGT CCTGCGGCC TTTCTTGCTGGCCGC Pden_0500 472955 - 473434 + | 3-demethylubiquinone-9 3-methyltransferase TERM 292 473425 - 473441 + F 79 -11.5 -3.90588 | overlap 473437 CATCGAGGCGGCCCG GCGCGGT TGA GCCGCGC TTTCCTTCGCGCGTC Pden_0501 473477 - 474028 + | molybdenum cofactor synthesis domain-containing protein Pden_0502 474617 - 474003 - | hypothetical protein Pden_0503 475452 - 474658 - | ABC transporter related Pden_0504 476522 - 475449 - | inner-membrane translocator TERM 293 476571 - 476602 + r 72 -13 -3.05816 | gap 1 GGGCGCCGCTGCCTG TGGCAAGGGCGGGAC GAC GTCCCGCCCT-GCGG TTCAGTCGAGGCTCA Pden_0505 477634 - 476615 - | periplasmic binding protein/LacI transcriptional regulator TERM 294 478446 - 478478 + G 70 -12.7 -3.32844 | GGGGCGGCTGCGGTT GGGGCCATCGCGC AATGCCG GCGCGATGGGCTC TTATCCGGTGCCGGG TERM 295 478811 - 478850 + G 76 -7.6 -4.36914 | gap 1, overlap 478834 CCCTTGGCCGCCGCG CCCGCACGCTGGGGGCCGC GGC GCTGCCGCTTG-GCGCGGG TTTTCTGCCGGGCGG TERM 296 478834 - 478868 + G 77 -10.7 -3.85698 | gap 1, overlap 478811 CTGGGGGCCGCGGCG CTGCCGCTTGGCGCGG GTTT TC-TGCCGGGCGGCAG TTTCTCGGCCCCGCG TERM 297 478933 - 478907 - g 71 -10.1 -3.73775 | gap 1 GGGACGGGCATGAAA CCCGGG-ACGCG CGCC CGCGTTCCCGTG ACGACAGGTGAAGAA Pden_0506 477754 - 478944 + | ROK family protein Pden_0507 478963 - 479877 + | chaperone DnaJ domain-containing protein Pden_0508 479874 - 480221 + | hypothetical protein Pden_0509 480385 - 480218 - | hypothetical protein Pden_0510 480858 - 480382 - | Holliday junction resolvase YqgF Pden_0511 482102 - 480855 - | putative cytochrome c-type biogenesis protein, CycH TERM 298 481260 - 481212 - G 74 -16.6 -2.70932 | GTGGCCGGCGAACCA GGCCAGGTCCTGGATCGAGCCG CGGAT CGGCGCGATCCAGGGCGCGTCC TCCGGCCCCTCGGCC TERM 299 481846 - 481788 - G 90 -19.5 -3.17763 | opp_overlap 481831, overlap 481822 CTGATAGGTCAGGAA GGCGCCGC-CCAGCAGCAGGGCCAGCCCC ACC AGAGCCG-CCCAGCCGCCGGCGCTGCGCC GAGTGCTGCCGGTGC Pden_0512 482305 - 483576 + | sarcosine oxidase beta subunit family protein Pden_0513 483734 - 483985 + | hypothetical protein TERM 300 484028 - 484050 + F 93 -18.4 -3.35813 | overlap 484009 484010 CCCTTCTCCCGAGGG CCGGGGGGCG TTT CGCCCCTCGG TTCCTTGCCATGCCG Pden_0514 484296 - 484676 + | sarcosine oxidase, delta subunit, heterotetrameric Pden_0515 484673 - 487606 + | sarcosine oxidase alpha subunit family protein Pden_0516 487599 - 488117 + | sarcosine oxidase, gamma subunit Pden_0517 488190 - 488645 + | hypothetical protein Pden_0518 488754 - 489353 + | superoxide dismutase TERM 301 489377 - 489398 + F 100 -14.4 -4.21194 | opp_overlap 489377 AAGGCATCGCATCAA GGCCCGCC CCGACC GGCGGGCC TTTTCCATGGTGCGC TERM 302 489398 - 489377 - f 76 -14.4 -3.1706 | opp_overlap 489377 AAGGCATCGCATCAA GGCCCGCC CCGACC GGCGGGCC TTTTCCATGGTGCGC Pden_0519 489405 - 489929 + | hypothetical protein Pden_0520 490564 - 489926 - | GDSL family lipase Pden_0521 492984 - 490561 - | heavy metal translocating P-type ATPase TERM 303 492368 - 492340 - G 74 -12.3 -3.63515 | overlap 492325 492342 492343 GCCGACGCGGAAGAA CACCCGTCCCGGC CCG GCCAGGACGGCGG TGGTCAGCAGGAACT TERM 304 492366 - 492342 - G 76 -13.5 -3.39784 | overlap 492325 492340 492343 CGACGCGGAAGAACA CCCGTCCCGGC CCG GCCAGGACGGC GGTGGTCAGCAGGAA TERM 305 492365 - 492343 - G 77 -17 -2.63549 | overlap 492325 492342 492340 GACGCGGAAGAACAC CCGTCCCGGC CCG GCCAGGACGG CGGTGGTCAGCAGGA Pden_0522 493412 - 493990 + | ErfK/YbiS/YcfS/YnhG family protein Pden_0523 493991 - 495088 + | tRNA 2-selenouridine synthase Pden_0524 495910 - 495107 - | purine nucleoside phosphorylase Pden_0525 496859 - 495894 - | inner-membrane translocator Pden_0526 498037 - 496859 - | inner-membrane translocator Pden_0527 499640 - 498015 - | ABC transporter related TERM 306 498836 - 498876 + g 75 -10.2 -4.07568 | gap 1, overlap 498837 CGACCATCCGCAATC CCCGCACCTCCAGCACCGG CGCG CCGGGGCGGGCGG-GCGGC TTTTCCACCCGCAAC Pden_0528 500626 - 499640 - | basic membrane lipoprotein Pden_0529 501119 - 500718 - | ribosomal-protein-alanine acetyltransferase Pden_0530 501709 - 501116 - | peptidase M22, glycoprotease TERM 307 501662 - 501634 - G 74 -16.7 -2.75992 | opp_overlap 501654, overlap 501631 501629 501654 501655 GGCGATGGAACAGGA CGCGGTCGCCTTG CAG CAAAGCGGCCGCG CAATGCGCGGCCGAT TERM 308 501654 - 501676 + g 75 -16.2 -2.87132 | opp_overlap 501634 501631 501629 501654 501655 TCGCCTTGCAGCAAA GCGGCCGCGC AAT GCGCGGCCGA TGTGTCGAAGCCCAG TERM 309 501676 - 501654 - G 90 -16.2 -3.72576 | opp_overlap 501654, overlap 501634 501631 501629 501655 TCGCCTTGCAGCAAA GCGGCCGCGC AAT GCGCGGCCGA TGTGTCGAAGCCCAG TERM 310 501675 - 501655 - G 84 -19.7 -2.83403 | opp_overlap 501654, overlap 501634 501631 501629 501654 CGCCTTGCAGCAAAG CGGCCGCGC AAT GCGCGGCCG ATGTGTCGAAGCCCA Pden_0531 502256 - 501702 - | NifU domain-containing protein Pden_0532 502925 - 502470 - | UspA domain-containing protein TERM 311 503594 - 503584 - g 72 -8.2 -4.08767 | opp_overlap 503593 GCCAGGTGCTGAAAA GCCG TCC CGGC GTCACCGGCCTTGCG Pden_0533 503082 - 503831 + | sugar transferase truA 504814 - 504029 - | tRNA pseudouridine synthase A TERM 312 504115 - 504082 - G 71 -11 -3.64703 | gap 2 CGCCGGTCAGGTAAA GCC-CCTGC-GGCGGG CAGA CCGGCCCGCAGGCGGC GCGGTCGCATGCGGC Pden_0535 505792 - 504818 - | hypothetical protein TERM 313 506006 - 506044 + H 74 -10 -3.72576 | opp_overlap 505966, overlap 506008 CCCCGCGCCTCATGC GCCCCTGGGCGGGGCGCC CGA GACGCTCCCCCCGGGGTA TTTGGTAAACGGAAA TERM 314 506008 - 506042 + H 91 -17 -3.44848 | opp_overlap 505966, overlap 506006 CCGCGCCTCATGCGC CCCTGGGCGGGGCGCC CGA GACGCTCCCCCCGGGG TATTTGGTAAACGGA TERM 315 506074 - 506062 - H 80 -4.7 -4.81249 | TGGTAAACGGAAAAA GCCGG TTT CGGGC GGGCGGGTGCGGCGT Pden_0536 506263 - 507711 + | cation transporter Pden_0537 508946 - 507708 - | peptidoglycan binding domain-containing protein glyQ 509237 - 510187 + | glycyl-tRNA synthetase subunit alpha Pden_0539 510184 - 510666 + | signal transduction histidine kinase regulating citrate/malate metabolism TERM 316 511625 - 511602 - g 74 -12.4 -3.5882 | opp_overlap 511619 GAGACGATCCTGAAA GGCAACCAGC GCGT GCTGGCCGCC CGCCTGTCCGACGCG TERM 317 511680 - 511658 - g 79 -11.2 -4.07568 | CTTCTTCTGGGAAAA CGACCTGCGC GAG GCGAAGGCCG GGATGGCCGACTGGG TERM 318 512188 - 512156 - g 73 -12.8 -3.53012 | gap 1 CGGGGTCCGCGCAAA TCTGGGCCAGACCTT TGCC AAGGCCCGGCCC-GA TGCCGATGCCGCCGA Pden_0540 510666 - 512723 + | glycine--tRNA ligase TERM 319 512761 - 512781 + F 82 -15.4 -3.06261 | opp_overlap 512750 AATACTCACGGGGGT GCGGGGGC AGTCG GCCCCCGC TCTTCGCACTTGCAG TERM 320 513104 - 513084 - g 72 -13.9 -3.14132 | GCCCTCGGCGATGAA CCCGGCCTG GGG CGGGCCGGG CACGGTGCTGAACGT Pden_0541 512830 - 515391 + | pyruvate phosphate dikinase TERM 321 515600 - 515586 - f 71 -12.8 -2.93723 | overlap 515581 TTCCGACGAACCAGA CCGGGC CGG GCCCGG ACCGAAAACAGGACC TERM 322 515770 - 515741 - g 70 -8.5 -3.92143 | gap 1, overlap 515742 ATATGAAACCAAGAA GGGACGCGCCGCCC GCC AGGCGAC-CGTCCA GATCAACCCTACCGA Pden_0542 515619 - 516158 + | cell wall hydrolase, SleB TERM 323 516189 - 516214 + F 95 -11.8 -4.25104 | CTGCTGCCCGATGCG CGGCCCTGTC CCTTGC GGCGGGGCCG TTTTCCTGAAAACAC Pden_0543 516201 - 517019 + | dihydroneopterin aldolase TERM 324 517187 - 517241 + G 85 -16.9 -3.6682 | CGCGTGGTGGACAGC GTCCCCGAGGCGGTGCTGGCGGCGC TGATC GCGCCTCGCGCGCCGCTTCTGGGCC TTTCCATGGATCGCC Pden_0544 517064 - 518035 + | dihydropteroate synthase TERM 325 518133 - 518147 + G 70 -12.8 -3.34398 | overlap 518131 GCGCTGCGCCTGGGC GCGGCC GCC GGCCGC TATTTCCGCCGGAGC Pden_0545 518046 - 519389 + | phosphoglucosamine mutase TERM 326 519397 - 519380 - T 72 -8.3 -4.07568 | opp_overlap 519380 519391 CGCGGCGGTCGAAAA GGCGGCC TGAA GGGCGCC TTGGCTGCCGCGCTG TERM 327 519487 - 519456 - T 100 -20.2 -4.05446 | opp_overlap 519455, overlap 519478 TTGGGCAACCAGAAA GCCGGCGGCGGTTT TCCT AAACCGCCGTCGGC TCGTAATCGTAGAGC Pden_0546 520593 - 519472 - | monooxygenase, FAD-binding TERM 328 519577 - 519546 - G 77 -11.5 -3.93236 | gap 1, opp_overlap 519543, overlap 519547 GAGCAAGGCGAGAAA CCGCG-CGCAGCCC GGCAT GGGCGACGGCGCGG GTCGGGCCGCGCAGG TERM 329 520630 - 520613 - R 71 -14.1 -2.73124 | opp_overlap 520611, overlap 520612 CCTTACCTGCGAAAG CGGCCCC CGCA GGGGCCG GCGTTCAGTCGTCGC Pden_0547 521057 - 520635 - | TraR/DksA family transcriptional regulator Pden_0548 521219 - 522058 + | ATPase TERM 330 522195 - 522213 + G 71 -11.6 -3.54741 | CTTTTCCCGGCTGAT GGCGCGCG ATC CGCGCGAC TTTCACGGGCTGGTG Pden_0549 522070 - 522510 + | GCN5-related N-acetyltransferase TERM 331 522536 - 522517 - T 91 -16.4 -3.75897 | AAGCTGTAATGCAAA GGGCGGCC CGAA GGCCGCCC CCGCGATCCGCTGTC Pden_0550 523053 - 522559 - | lytic transglycosylase, catalytic TERM 332 523150 - 523120 - R 100 -14.8 -4.27316 | gap 1, opp_overlap 523114, overlap 523123 TCGGGGAATTCAAAA GAATGGGCCGCCC GGTTCA GGGCGGCCCAT-C GGCGGATTTTCGCCG TERM 333 523148 - 523123 - R 100 -17.6 -4.25859 | opp_overlap 523114, overlap 523120 GGGAATTCAAAAGAA TGGGCCGCCC GGTTCA GGGCGGCCCA TCGGCGGATTTTCGC Pden_0551 524594 - 523200 - | dihydrolipoamide dehydrogenase Pden_0552 525037 - 524645 - | inner membrane protein Pden_0553 525294 - 525037 - | hypothetical protein Pden_0554 526969 - 525437 - | dihydrolipoamide acetyltransferase TERM 334 526811 - 526841 + g 84 -16.8 -3.47349 | overlap 526805 CTCGGCCAGCTTGCC GGCGACGGGCGAGG GCA CCTCGACCGTCACC TTGTCGGTTTCCAGC kgd 529937 - 526971 - | alpha-ketoglutarate decarboxylase Pden_0556 530182 - 529934 - | hypothetical protein Pden_0557 530201 - 530545 + | hypothetical protein Pden_0558 531473 - 530589 - | succinyl-CoA synthetase, alpha subunit sucC 532671 - 531478 - | succinyl-CoA synthetase subunit beta TERM 335 531716 - 531751 + g 72 -4.6 -4.45544 | gap 1, overlap 531708 531716 ATACCCTTCACGTTC GG-GTCCGAGGTGATGA TCT TGAACGCCTCGGTCACC TTTTCCTTGGTGGCG TERM 336 532461 - 532486 + g 70 -3.2 -4.42238 | overlap 532458 532457 CCGATTTTGCCAGGC GGACGCCG CCCTTTTCAC CGGCTTCC TTTTCCTTGAAGTGA TERM 337 532843 - 532812 - H 71 -4.4 -4.46212 | opp_overlap 532765 GCTGCGATCACAAAA GTCGTCGAGGCA TCCTTCCG CGCCTCGAAAAC CCCGGTTCCGGGCCT Pden_0560 532894 - 536133 + | hemolysin-type calcium-binding region TERM 338 536167 - 536145 - T 100 -17.7 -5.5112 | opp_overlap 536145 CTGAGCAAGAAAAAA CCCCGCGGG ACGCA CCCGCGGGG TTCTTCGTTCCGATG TERM 339 536145 - 536167 + T 95 -17.7 -3.8186 | opp_overlap 536145 CTGAGCAAGAAAAAA CCCCGCGGG ACGCA CCCGCGGGG TTCTTCGTTCCGATG Pden_0561 537155 - 536193 - | malate dehydrogenase TERM 340 536714 - 536735 + g 82 -6.5 -4.72272 | gap 1, opp_overlap 536714, overlap 536717 AGCGGGCCGAATCGA GTACGCCGGC CAT GCCGACG-AC TTTTTCATGCGGCAG TERM 341 537364 - 537379 + G 75 -8.2 -4.18494 | GCTGGGCTGGGTGCT GGCGGT GATC GCCGCC TTTTCGATCGGGCTG Pden_0562 537341 - 538075 + | hypothetical protein Pden_0563 538156 - 538995 + | Citryl-CoA lyase Pden_0564 539041 - 539592 + | NnrU family protein Pden_0565 539594 - 539800 + | hypothetical protein Pden_0566 539810 - 540844 + | dehydratase TERM 342 541522 - 541534 + G 83 -4.8 -4.90906 | CGTGCTGGCCGTGCT GACG CTGAT CGTC TTTTTCGTGTTCTGA Pden_0567 541157 - 541549 + | succinate dehydrogenase, cytochrome b subunit Pden_0568 541566 - 541955 + | putative succinate dehydrogenase, hydrophobic membrane anchor protein sdhA 541965 - 543767 + | succinate dehydrogenase flavoprotein subunit Pden_0570 543767 - 544123 + | hypothetical protein TERM 343 544125 - 544147 + G 79 -14.8 -3.27525 | opp_overlap 544114, overlap 544118 AGCAGGCCGCCTGAT GGCCGGGCGC GGC GCGCTTGGCC TTGGCTTTGCCCCGG Pden_0571 544123 - 544449 + | hypothetical protein sdhB 544520 - 545299 + | succinate dehydrogenase iron-sulfur subunit TERM 344 545339 - 545386 + F 80 -8.4 -4.36914 | overlap 545341 545344 TGCCATGATATGCCG TTTGACGCCGCGTCGCAGAG CTGGATTT TTCTGCGGTGCGGCGTTATC TTTTCTGACGGGGAG TERM 345 545341 - 545384 + F 90 -15.4 -3.79419 | overlap 545339 545344 CCATGATATGCCGTT TGACGCCGCGTCGCAGAG CTGGATTT TTCTGCGGTGCGGCGTTA TCTTTTCTGACGGGG TERM 346 545344 - 545381 + F 95 -14.9 -4.02581 | overlap 545341 545339 TGATATGCCGTTTGA CGCCGCGTCGCAGAG CTGGATTT TTCTGCGGTGCGGCG TTATCTTTTCTGACG TERM 347 545479 - 545456 - f 82 -6 -4.81249 | gap 1 GCCGAAACGCAAAAA CAG-ACCGCCA AGC TGGCCGTGCTG AAGCCGGCCAAGGCA TERM 348 545626 - 545645 + F 100 -12.8 -4.5442 | ATCGCGGGCCTTCCT GCGCGGCT TCGC GGCCGCGC TTTTGTCATTCCCGC TERM 349 545965 - 545983 + G 71 -11.6 -3.66356 | CGAATGCCTGGTCCC GCCGCGCG AGG CGCGCTGC TTTCACGTTCCGGCT Pden_0573 545816 - 546649 + | hypothetical protein Pden_0574 547338 - 546646 - | beta-lactamase domain-containing protein Pden_0575 547470 - 547757 + | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 350 547811 - 547772 - g 73 -7.9 -4.18488 | gap 3, opp_overlap 547773 547773, overlap 547773 547776 AGCGACCTGAACAAA CTGACCATCGCCGCAGCCCG CGA CGGGCTGC-GCAAGGG-C-G ATTTCACCAGCGCTG TERM 351 547809 - 547776 - g 70 -15.3 -2.76093 | gap 1, opp_overlap 547773 547773, overlap 547772 547773 ACCTGAACAAACTGA CCATCGCCGCAGCCCG CGA CGGGCTGC-GCAAGGG CGATTTCACCAGCGC gatA 547754 - 549235 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 352 549515 - 549486 - g 78 -6.9 -4.57073 | overlap 549490 GACGCCGGCCAAAAA GCAGCCGGCTCAG GCCG CGGCGCCTGCCGC GCCGGTCAGGGCGCA TERM 353 549663 - 549675 + G 75 -10.5 -4.03234 | opp_overlap 549672 TGGCAGCGCCGATGC GGCGC AAA GCGCC TTTATCTCGGCGGGC Pden_0577 549259 - 549783 + | hypothetical protein Pden_0578 549780 - 550406 + | N-acetylmuramoyl-L-alanine amidase Pden_0579 551167 - 550394 - | hypothetical protein TERM 354 551239 - 551203 - R 100 -15.2 -4.54727 | GGCCGGAAATGAAAA GCGGCGGTGCCC AGGGAGGAGGAGG GGGCACCGCCGC GCAACGCTGGCCCAG Pden_0580 552015 - 551716 - | hypothetical protein TERM 355 553204 - 553241 + G 71 -10.4 -3.72695 | overlap 553199 CATCTGTTCGGCCAT GGCGGCGTCGCCGCCG AGGCCG CGGCGCTGGGGCTGCC TTTCCTGGGCGAGAT Pden_0581 552277 - 553380 + | putative Mrp (multidrug resistance-associated proteins) family protein TERM 356 553551 - 553527 - f 79 -11.4 -3.85698 | gap 1, opp_overlap 553530 553531 CTCTTGCGGTAGAAA GCCCCGC-CCC GGGC GGGCGCGGGAC GATTCTGGGAAATGG TERM 357 553934 - 553967 + F 100 -18.1 -4.19735 | opp_overlap 553930 GATGGGAACGAGGGC GGCGGATCGGGCAGT GGCA GCAGCCCGGTCCGCC TTTCCTTTTCGGGCA Pden_0582 554021 - 554530 + | cell division protein MraZ Pden_0583 554532 - 555500 + | S-adenosyl-methyltransferase MraW Pden_0584 555500 - 555883 + | hypothetical protein TERM 358 556015 - 555998 - g 71 -9.8 -3.76224 | opp_overlap 555990 556011 556012, overlap 555966 CCGCGATCCAGGAAA GGGCGC GCGGCA GCGCCC GGACCCGGCTGTTCT Pden_0585 555880 - 557685 + | peptidoglycan glycosyltransferase murE 557715 - 559184 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase Pden_0587 559181 - 560566 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase Pden_0588 560566 - 561648 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 359 561624 - 561653 + F 88 -2.7 -5.2696 | gap 1 CCTGGCACTGATCGG GCTTG-CGACGCTG AAG CTGCGCTGACAGGC TTTTTTCCGTTTTCC TERM 360 562343 - 562379 + G 83 -12.3 -4.07568 | gap 1, overlap 562336 562336 562335 562332 CATCTGGACCGCCAT GGCGGT-CTTGGCGGC TATTTC GCCGCCAAGCGCCGGC TTTTCGCCGAGGGCG Pden_0589 561731 - 563131 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 361 563312 - 563291 - T 100 -15.1 -4.7254 | opp_overlap 563287 563285 563284, overlap 563305 AGCGCGCATGAAAAA GGCCCCGGC GAGA ACCGGGGCC CTGATCCTTGTGGCA Pden_0590 564489 - 563332 - | membrane protein involved in aromatic hydrocarbon degradation TERM 362 565372 - 565417 + G 70 -13.1 -3.30771 | overlap 565373 GGCCACGGCCGCCGC GCTGGCCTTGGCCGCCCTGCG CCTG CGCTGGCTGGTCGAGGCCGGG TTCTCGCCGCTCTGG TERM 363 565373 - 565416 + G 73 -16.6 -2.58249 | overlap 565372 GCCACGGCCGCCGCG CTGGCCTTGGCCGCCCTGCG CCTG CGCTGGCTGGTCGAGGCCGG GTTCTCGCCGCTCTG Pden_0591 564656 - 565627 + | putative tellurite resistance protein Pden_0592 565697 - 567145 + | inosine-5'-monophosphate dehydrogenase TERM 364 567146 - 567191 + F 100 -21.2 -4.64766 | gap 2 TATCGCCTGGGTTGA GCCCTTGGGCCGAGCCGCCGCC GAGT GGCGG-GGC-CGGCCCAGCGGC TTTTTCGGGTATGAG TERM 365 567194 - 567214 + F 77 -4.7 -4.60487 | overlap 567195 CCGGCCCAGCGGCTT TTTCGGG TATGAGC CCCGAAG TTTTTCAGGATCATC Pden_0593 567470 - 568273 + | hypothetical protein TERM 366 569452 - 569470 + G 81 -8 -4.53303 | GCGGCGTTTTACACC GCTGACCG CCT CGGACGGC TTTTATCTGGCCCTG Pden_0594 568349 - 569500 + | Fmu (Sun) domain-containing protein Pden_0595 569558 - 571600 + | multi-sensor hybrid histidine kinase Pden_0596 572208 - 571624 - | hypothetical protein TERM 367 571872 - 571927 + g 74 -16.9 -2.75535 | gap 1, opp_overlap 571901 GCGCGACGTCCGGGC CGCCGGGATCGGCATAGGCTTGCGCG AAATC CGCG-AAGCTGAGGCCGATCATGGCG TGGTTCGGGTCTTCG TERM 368 572760 - 572746 - g 70 -4.2 -4.39277 | opp_overlap 572749, overlap 572748 GAAGAGCAGAAGAAA GGCG GCGTTTG CGCC TTTGTCGATGCCGAA recA 572452 - 573522 + | recombinase A TERM 369 573572 - 573546 - f 71 -12.2 -3.28712 | opp_overlap 573531 573546 573547, overlap 573547 CGCCCTCGCTCATAA GGTGCGCGGGAC GTG GTCTCGCGCACA TTCCTGGCTCTGAGA TERM 370 573546 - 573572 + F 78 -14.4 -3.20382 | opp_overlap 573546 573547, overlap 573531 573547 CGCCCTCGCTCATAA GGTGCGCGGGAC GTG GTCTCGCGCACA TTCCTGGCTCTGAGA TERM 371 573571 - 573547 - f 77 -15.7 -2.57132 | opp_overlap 573531 573546 573547, overlap 573546 GCCCTCGCTCATAAG GTGCGCGGGAC GTG GTCTCGCGCAC ATTCCTGGCTCTGAG TERM 372 573547 - 573571 + F 83 -17.9 -2.52015 | opp_overlap 573547 573546, overlap 573531 573546 GCCCTCGCTCATAAG GTGCGCGGGAC GTG GTCTCGCGCAC ATTCCTGGCTCTGAG alaS 573749 - 576406 + | alanyl-tRNA synthetase TERM 373 576549 - 576573 + G 71 -10.7 -3.54424 | gap 1, opp_overlap 576549, overlap 576536 GCTTGAGGGCAAGGA CCGCGCC-CG CAATGT CGTGGCGCGG TTTCCCAGCCTGGAA Pden_0599 576403 - 576693 + | hypothetical protein Pden_0600 576760 - 577554 + | putative glutamine amidotransferase Pden_0601 577939 - 577694 - | hypothetical protein TERM 374 577859 - 577882 + g 90 -13.8 -3.97947 | CCAGCGGCGCGGGAA GCGGTCCGCG CAAT CGAGGACCGC TTTGTCATCAATGCG Pden_0602 578181 - 577960 - | hypothetical protein TERM 375 577998 - 578040 + g 82 -8.3 -4.4078 | gap 1, opp_overlap 577995 AGACGTAATGCACGA TCCGGTCGCGGGTCAGGCCC ATCC GGGCCAGTTCGGC-ATCGGA TTTTGCTTCCAGCGC TERM 376 579459 - 579505 + G 73 -12.3 -3.40403 | gap 2, opp_overlap 579457, overlap 579470 GCGCGGCCATGAATT CGGCACCGTGACCGGCCGCAAGC GCC GCT-GCGGCTGGTT-CGATGCGG TTCTGGTGCGCCAGA Pden_0603 578569 - 579861 + | adenylosuccinate synthetase Pden_0604 579873 - 580085 + | hypothetical protein Pden_0605 580103 - 580738 + | thiamine pyrophosphokinase Pden_0606 581795 - 580824 - | binding-protein-dependent transport systems inner membrane component TERM 377 581732 - 581767 + g 71 -10.5 -3.76224 | gap 3 GATCGGCGGGCGGCA GCGCC-TCG--GCCCCCG GGG CGGGGGCATTGACGGCGC TTTCCTCGATGAGCA Pden_0607 582795 - 581788 - | binding-protein-dependent transport systems inner membrane component TERM 378 582334 - 582313 - G 70 -8.7 -3.9122 | overlap 582329 CACCCCGGTAAAGAA GGTCGGC AGCGAGAA GCCGACC ATCGAGATGAACGTG Pden_0608 584503 - 582803 - | extracellular solute-binding protein Pden_0609 584724 - 586553 + | ABC transporter related TERM 379 586588 - 586554 - f 84 -15.1 -3.36878 | overlap 586578 GCGACGCATGGATAA GGCGCG-GGCACCTGCG CCA CGCA-ATGCCGCGCGCC CGGCTGCGCGGCCTT TERM 380 587391 - 587349 - g 79 -11.4 -4.08767 | gap 2, opp_overlap 587340 TTGATCCGCTGAAAA GCGGCGTGATCTCGGTCTGC GTGGT GCAGACCGAT-TC-CACCGC GCATAACGTCATCCC Pden_0610 586652 - 587821 + | amidohydrolase TERM 381 587884 - 587899 + T 77 -11.8 -3.66178 | opp_overlap 587881 587884 GAAACGGAGAAATCA GGGGCC GCGA GGCCCC TTTGCCGTTCAGAAA Pden_0611 589299 - 587908 - | dihydrolipoamide dehydrogenase TERM 382 588446 - 588456 + g 72 -3.2 -4.56597 | overlap 588431 TGGGTGCGGTCGATC TTGG CGC CCAG TTTTTCCAGCCCGAG TERM 383 588574 - 588601 + g 93 -14.2 -4.11371 | gap 1, overlap 588560 GGTGACCTTGCCTTT GGC-GCGGTCGAG TTT CTTGACCGCCGCC TTTTCCAGGATCTTC Pden_0612 589926 - 589345 - | hypothetical protein Pden_0613 591234 - 589984 - | major facilitator transporter Pden_0614 592313 - 591234 - | queuosine biosynthesis protein Pden_0615 592411 - 592701 + | putative bacterioferritin-associated ferredoxin Pden_0616 592649 - 593134 + | bacterioferritin TERM 384 593162 - 593181 + T 95 -12.1 -4.21922 | CAGATCCGCTTGTCA GGGGGCC CTTCGC GGCCCCC TTTGATTTTGGCTCA Pden_0617 593868 - 593194 - | HAD family hydrolase TERM 385 593607 - 593592 - G 70 -8.2 -3.85698 | CGGTGCCGGGATAAA GCCGCG TATG CACGGC TATGGCCTTGCCGTA Pden_0618 593973 - 595313 + | nucleotidyl transferase TERM 386 595735 - 595782 + G 78 -14 -3.61103 | gap 1, overlap 595746 ATGGGGCAGGGCCTT GCCCCCGTCGAGGCGGCGCGGGC GGT GCTGGCGCGGC-TCGACGGCGCC TTTGCGCTGGCCTTC Pden_0619 595315 - 597132 + | D-fructose-6-phosphate amidotransferase Pden_0620 598119 - 597136 - | peptidase S58, DmpA Pden_0621 598259 - 598843 + | peptide methionine sulfoxide reductase Pden_0622 598844 - 599713 + | ribosomal L11 methyltransferase TERM 387 599753 - 599734 - T 85 -12.1 -4.07678 | opp_overlap 599731 599736 GCTGAAAATACTAAA GGCGGCC TTGCGG GGCCGCC TGGTCGTCTTGCCCG Pden_0623 600028 - 599834 - | hypothetical protein Pden_0624 600986 - 600267 - | hypothetical protein ubiA 601003 - 601974 + | prenyltransferase TERM 388 603098 - 603084 - g 72 -9.2 -3.96148 | opp_overlap 603084 GCCCGGCATGAGAAA CCCGGC GAG GCCGAG GCGGGGCCGGCCGAG Pden_0626 602001 - 604307 + | OmpA/MotB domain-containing protein Pden_0627 604338 - 604664 + | hypothetical protein Pden_0628 605521 - 604661 - | hypothetical protein TERM 389 605043 - 605028 - G 75 -10.4 -4.015 | TCATCCACGAAATAA TCGCGG ATGA CCGCGA CCTCGCGCGGATCGA TERM 390 605327 - 605315 - G 70 -9.1 -3.91716 | CGACTTGGCAAAGAA GGTCG ATG CGACC ATGCCCGATTGCGCG TERM 391 605437 - 605420 - G 77 -11.3 -3.93288 | opp_overlap 605434 CTTCACCGAAGCAAA GGCATCC TCAC GGATGCC CAGCCGGGCCTTGAA Pden_0629 605964 - 605518 - | hypothetical protein TERM 392 606096 - 606077 - R 100 -16.4 -4.8622 | opp_overlap 606071 GGTCGGAACGAAAAA GGGCGCCG TCTC CGGCGCCC TTGCGGTGGCTTAGA Pden_0630 607291 - 606107 - | aromatic amino acid aminotransferase TERM 393 606852 - 606828 - G 74 -12.1 -3.53811 | TTCATGCCCTCGAAA TCGACGCCGCG GGT CTCGGCATCGA AATAGCGATAGGTCT Pden_0631 608151 - 607291 - | 3-mercaptopyruvate sulfurtransferase TERM 394 607524 - 607541 + g 72 -8.3 -4.07568 | CGTCCTGGTCGTAGA GCCGGCC GAAG GGCAGGC TTTTCGAGCCGGGGA smpB 608687 - 608217 - | SsrA-binding protein Pden_0633 608839 - 610500 + | acetolactate synthase 2 catalytic subunit Pden_0634 611935 - 610511 - | phosphate transporter TERM 395 611809 - 611783 - G 73 -10 -3.86897 | overlap 611798 CTGATCCGCCAGAAA GCCGGTGCCAAC ATA GCTGGCGGCGGC GATGAAGATCAGCGC Pden_0635 612402 - 611932 - | NUDIX hydrolase TERM 396 612350 - 612380 + g 71 -11.8 -3.53811 | gap 1 GCGACCTGCATGTCG GGCGGGCGGCGGC CGATCA GCCGC-GCCAGCC TTTCGCGGAACTCGA Pden_0636 612830 - 612399 - | hypothetical protein Pden_0637 614948 - 612897 - | penicillin-binding protein 1C Pden_0638 616142 - 615033 - | hypothetical protein Pden_0639 617519 - 616152 - | protein of unknown function DUF463, YcjX family protein TERM 397 619085 - 619058 - g 75 -9 -4.21194 | gap 1 CGCGACGAGGCAAAA CGCCTGCG-CCGC ATG GCGGACGAGGGCG TCGGCCTGTCGCCTG Pden_0640 617618 - 620026 + | ATP-dependent helicase HrpB Pden_0641 620614 - 620066 - | hypothetical protein Pden_0642 621661 - 620768 - | methionyl-tRNA formyltransferase Pden_0643 622566 - 621688 - | dienelactone hydrolase TERM 398 621760 - 621727 - G 72 -13.2 -3.16323 | gap 3, opp_overlap 621727 AAAACCCTGCATGAA GGCGCGGATGTCGCGGG TGG CCCGCG-C--CCGCGCC TTTGCGTCGAATTCC TERM 399 621727 - 621760 + g 78 -13.2 -3.66874 | gap 3, opp_overlap 621727 AAAACCCTGCATGAA GGCGCGGATGTCGCGGG TGG CCCGCG-C--CCGCGCC TTTGCGTCGAATTCC Pden_0644 624188 - 622551 - | hypothetical protein Pden_0645 624993 - 624493 - | peptide deformylase Pden_0646 625834 - 625277 - | peptide deformylase Pden_0647 626348 - 625827 - | peptide deformylase TERM 400 626207 - 626177 - G 72 -8.9 -4.08974 | gap 1 AGTCCATGACATAAA GCCGCGACAGCACG CCCA CCTGCGG-CGCGGC CAGGCCCACGCCCGG Pden_0648 626439 - 627623 + | aminotransferase, class I and II Pden_0649 627620 - 628249 + | ErfK/YbiS/YcfS/YnhG family protein TERM 401 629033 - 629071 + G 72 -13.2 -3.14602 | gap 1, overlap 629043 CGGTCTTCATGCTGG GCCTGCCCATCGGCC TGACCATGGT GGCCGA-GGGCGGGC TGTTCGTCGGCTCGA Pden_0650 628306 - 629682 + | MATE efflux family protein Pden_0651 629713 - 629949 + | AsnC family transcriptional regulator TERM 402 630714 - 630764 + G 71 -10.8 -3.54424 | AAGGCCCATGCCATG GCGGGCGCGCGGATCGGCTATGCC ATC GGCCCGGCCGAACTGATCGCCGGC TTTGACCGCATCCGC Pden_0652 629991 - 631136 + | histidinol-phosphate aminotransferase Pden_0653 631668 - 631186 - | AsnC family transcriptional regulator Pden_0654 631740 - 632120 + | hypothetical protein Pden_0655 632113 - 633768 + | nitrite/sulfite reductase hemoprotein beta subunit Pden_0656 633761 - 634492 + | phosphoadenosine phosphosulfate reductase Pden_0657 634489 - 634860 + | hypothetical protein Pden_0658 634914 - 635750 + | ferredoxin--NADP(+) reductase TERM 403 635756 - 635788 + F 74 -11.3 -3.63744 | gap 1, overlap 635754 635756 CGGGATCTGAGGTCG CTCC-GGGGGTTCG CACCCC CGGACCCCCCGGGG TATTTTGCGAAACGG TERM 404 635833 - 635809 - f 82 -5.6 -4.81249 | opp_overlap 635829, overlap 635801 TGCGAAACGGAAAAA GCCCGGCG TTGACAGTT CGTCGGGC GATGCCCATGTTCCG TERM 405 636079 - 636054 - g 82 -6.7 -4.74103 | CTCGGAATCGAAAAA GCACGTCAAGG CGAT CCGGGACGCGC TGGCCGCGGATCCGA TERM 406 638401 - 638383 - g 70 -4.4 -4.41348 | overlap 638384 638397 638398 CCGGCCGCAAAGAAA CCCGCTGC GAA GAAGCCGG CTGCGGCCAAGGCGA Pden_0659 635875 - 638430 + | DNA topoisomerase I TERM 407 638546 - 638578 + F 75 -3.4 -4.72272 | gap 2, opp_overlap 638536, overlap 638555 AATACTCATGACGCG GCCAGGACGCTGGGGC AAC GCCGC-G-GTTTTGGC TTTTTGATCCGGGCC TERM 408 638555 - 638571 + F 76 -5.7 -4.49644 | overlap 638546 GACGCGGCCAGGACG CTGGGGC AAC GCCGCGG TTTTGGCTTTTTGAT Pden_0660 638639 - 640381 + | gamma-glutamyltransferase Pden_0661 640722 - 640375 - | hypothetical protein TERM 409 640497 - 640539 + g 91 -15.7 -3.88291 | GCAGGGGGCCGGGAT TGGCGTCCAGTTCCG-CGCCG TAG CGGCGGCGGAACTCGG-GCCA TTTCTCGGGGTCGTG TERM 410 640755 - 640782 + r 71 -7.6 -4.07568 | gap 1 AAGGAAATTCCCGGG CGGG-CGGTCAGG TTC CATGTCCGTCCCG TTTTCGGGACCGGCA Pden_0662 642597 - 641089 - | amino acid carrier protein TERM 411 642680 - 642639 - R 100 -23.7 -3.14132 | gap 1, opp_overlap 642648, overlap 642642 CTTTGCCGGGATCAA TGACGGGCGGCCGG-GCGCG ATC CGCGCGCCGGCCGCCCGGGA CGGCGGGACAGGCCC TERM 412 642677 - 642642 - R 100 -29.8 -2.77899 | gap 1, opp_overlap 642648, overlap 642639 TGCCGGGATCAATGA CGGGCGGCCGG-GCGCG ATC CGCGCGCCGGCCGCCCG GGACGGCGGGACAGG Pden_0663 644766 - 642700 - | TRAP transporter, 4TM/12TM fusion protein TERM 413 644448 - 644434 - G 71 -11.4 -3.59698 | CCATGGCACATAGAA GGCGCT GAC AGCGCC GCCGATGGCGAGCAT TERM 414 644799 - 644826 + r 100 -19.2 -3.77206 | gap 1, opp_overlap 644799 CGGTTCAGGGCCAAA GGACGCGGACCGG GGT CCGG-CCGCGTCC TTTCGTCAGCTTCTG TERM 415 644826 - 644799 - R 100 -19.2 -3.57144 | gap 1, opp_overlap 644799 CGGTTCAGGGCCAAA GGACGCGGACCGG GGT CCGG-CCGCGTCC TTTCGTCAGCTTCTG Pden_0664 645850 - 644849 - | TRAP transporter solute receptor TAXI family protein Pden_0665 646155 - 647639 + | phosphate transporter Pden_0666 647851 - 649314 + | amino acid carrier protein TERM 416 649336 - 649360 + T 93 -18.5 -3.53012 | opp_overlap 649334, overlap 649341 649342 CCGGCCAATGACAGG GGCCCCGCCCG CGG CCGGCGGGGCC TTTCCGGCGACCGCG Pden_0667 650526 - 649453 - | hypothetical protein TERM 417 650135 - 650179 + g 75 -9.3 -4.1899 | gap 1, overlap 650125 AGGGGTGCCGCCGGC CGCCGGCGCATGTGTTCGGC CAGCAT GTCGAACATG-GCGTCGGGG TTTTCGCTCAGATGC Pden_0668 651113 - 650523 - | TetR family transcriptional regulator TERM 418 651824 - 651849 + G 71 -11.1 -3.59979 | gap 1 GCGTCAATCCGGCGC GCGG-CATCGCC CCG GGCGAGGACCGC TTTCGCATGGACGGC Pden_0669 651205 - 652191 + | 3-oxoacyl-(acyl-carrier-protein) synthase Pden_0670 652191 - 653123 + | NAD-dependent epimerase/dehydratase Pden_0671 653111 - 653893 + | beta-lactamase domain-containing protein Pden_0672 653890 - 655170 + | putative adenylate-forming enzyme Pden_0673 656311 - 655286 - | regulatory protein, LacI TERM 419 656567 - 656588 + G 70 -4.3 -4.38927 | CGATTCGGCGCTGAC CGTCTCGAT CATC AGCGCGACG TTTCTTGTCTGCGGC Pden_0674 656409 - 657740 + | xanthine/uracil/vitamin C permease Pden_0675 657740 - 659137 + | amidohydrolase Pden_0676 659134 - 659844 + | hypothetical protein TERM 420 659953 - 659915 - T 100 -22.6 -4.46212 | gap 1, opp_overlap 659911, overlap 659917 TGCCGGATGAGAAAA GC-GTCCGCCACGCACC GGGCTG GGTGCGTGGCGGACTGC CGCATTCGTGACGGC TERM 421 659950 - 659917 - T 100 -24 -2.56122 | opp_overlap 659911, overlap 659915 CCGGATGAGAAAAGC GTCCGCCACGCACC GGGCTG GGTGCGTGGCGGAC TGCCGCATTCGTGAC Pden_0677 660733 - 659972 - | putative hydantoin racemase protein Pden_0678 662089 - 660737 - | permease for cytosine/purines, uracil, thiamine, allantoin Pden_0679 662828 - 662118 - | Asp/Glu racemase Pden_0680 662953 - 663633 + | GntR family transcriptional regulator Pden_0681 663687 - 664271 + | hypothetical protein Pden_0682 664351 - 664755 + | 4-hydroxybenzoyl-CoA thioesterase Pden_0683 664857 - 665552 + | MotA/TolQ/ExbB proton channel Pden_0684 665554 - 666018 + | biopolymer transport protein ExbD/TolR TERM 422 666901 - 666886 - g 75 -4.6 -4.56597 | overlap 666887 GCCGCGGCCGAAAAA CGCGCC GCCG AGCGCA AGGCCGAGGCCGAAC TERM 423 667077 - 667053 - g 81 -10.6 -4.28361 | overlap 667042 667069 667070 GGAAGCCGAGGAAAA GGCCGCGGCC GAAAA AGCCGCCGCC GAGAAGAAGGCGGCC TERM 424 667091 - 667069 - g 83 -8.3 -4.56597 | overlap 667053 667070 667086 GCCGCGGCCGAAAAA GCCGCCGCC GAGAA GAAGGCGGC CGAGAAGGCTGCCGC TERM 425 667497 - 667476 - g 75 -10.1 -4.09685 | CCTGATGTGCGAAAA GGGCGGC TACAAGCT GCCGCCC GAGAAATACAACCGC Pden_0685 666022 - 667566 + | TolA family protein tolB 667568 - 668953 + | translocation protein TolB TERM 426 669104 - 669128 + G 87 -17.9 -3.34398 | overlap 669102 TTCGGGCGTCGGCGC CTCGGTGCTGC CGG GCAGCGCCGAG TATTTCAAGGCCAGC Pden_0687 668964 - 669485 + | OmpA domain-containing protein TERM 427 669468 - 669498 + F 78 -13.2 -3.55801 | GTGACGGTGGTCAGC CCCGGGGCGGGCAT GTG ATGGCTGCCCGGGG TTTCAGGGGGTTGCT Pden_0688 669482 - 670411 + | hypothetical protein TERM 428 671154 - 671178 + G 74 -11.4 -3.78934 | gap 1, overlap 671154 GACGCCTTTCGCGCA G-CGCCGCTGG AGAT CCGGCGGCGGC TTCTTGTCGCAGGGC Pden_0689 670401 - 671630 + | tRNA(Ile)-lysidine synthetase TERM 429 672963 - 672926 - g 70 -3.9 -4.51174 | CGAGCAGAAGGAAAA GACCGCCTATCACGAGG CCGG CCACGCCATCGTCGGCC TGTCGCTGCCGAAAT TERM 430 673343 - 673329 - g 73 -10 -3.92373 | opp_overlap 673340 GAGCTGATCGAGAAA GAGGTC CAT GACCTC ATCGAAGAGGGTTAT Pden_0690 671691 - 673586 + | ATP-dependent metalloprotease FtsH TERM 431 673608 - 673631 + F 77 -11.6 -3.75153 | opp_overlap 673601 673609, overlap 673609 ATTGGAAACAGGGAA ACCCCCGGGC GCAG GTCCGGGGGC TTTGCATTGGCGAAA TERM 432 673630 - 673609 - f 84 -12.9 -3.81137 | opp_overlap 673609 673608, overlap 673601 TTGGAAACAGGGAAA CCCCCGGGC GCAG GTCCGGGGG CTTTGCATTGGCGAA TERM 433 673609 - 673630 + F 77 -15.1 -2.84878 | opp_overlap 673601 673609, overlap 673608 TTGGAAACAGGGAAA CCCCCGGGC GCAG GTCCGGGGG CTTTGCATTGGCGAA TERM 434 673769 - 673781 + F 86 -9.1 -4.4715 | opp_overlap 673769 673768 GACCTCGCAAGAAAC GGGGA AGA TCCCC TTTTGTCAGTTGAAA Pden_0691 673915 - 674232 + | chorismate mutase Pden_0692 674679 - 674269 - | hypothetical protein ruvB 675697 - 674672 - | Holliday junction DNA helicase B Pden_0694 676572 - 675694 - | peptidase M48, Ste24p TERM 435 676234 - 676252 + g 73 -8 -4.14392 | CCGCATGATGCCCTG CGTCACCG CGA CGGCGGCG TTTTCCGGGTTGCGG ruvA 677249 - 676578 - | Holliday junction DNA helicase motor protein Pden_0696 677754 - 677260 - | crossover junction endodeoxyribonuclease RuvC TERM 436 677804 - 677792 - H 71 -9.1 -3.78953 | opp_overlap 677789 677792 AGGGTTAGCACGAAA GGCGA ACA TCGCC TAGTTGCTTTGTCAT TERM 437 679510 - 679534 + G 73 -10.6 -3.90744 | CTTCGACGCCATCAC CCGCGCCGCG ACCTG TGCGGCGGGG TTCTTTACCGACCGG TERM 438 679755 - 679799 + G 88 -12.9 -4.32857 | overlap 679759 GGCGCATCCTGGCGC TGGTGCTGGTCGGGATCATCG GGC TGATGGTCTCGGTCAGCTTCA TTTATCTTTCGGCCC TERM 439 679759 - 679795 + G 88 -14.5 -3.72621 | overlap 679755 CATCCTGGCGCTGGT GCTGGTCGGGATCATCG GGC TGATGGTCTCGGTCAGC TTCATTTATCTTTCG TERM 440 680329 - 680354 + G 76 -13.9 -3.47573 | opp_overlap 680329 680326 GCGCGGCCACAACAT GCCGGGCGGCG GCTT CGTCGCCGGGC TTGTGGTCTCGGTGG Pden_0697 677879 - 680719 + | putative monovalent cation/H+ antiporter subunit A Pden_0698 680719 - 681072 + | putative monovalent cation/H+ antiporter subunit C TERM 441 681332 - 681390 + G 70 -15.3 -2.79505 | overlap 681338 GCTGCTGACGGCCGT GCTGGCGCTGGCGGT-CCAGCTTTACGCC ATG GGC-TCGGGCTGGGACCGCAAGGGCCGGC ATTTCCATGCGCTCT TERM 442 682201 - 682232 + G 73 -7.3 -4.15106 | gap 2, overlap 682229 CCGCGCTGTATTTCA CCGCGGCCATCGCCG TGGT CGGC-ATG-CCGCCG TTTTCCGGCTTCATC Pden_0699 681069 - 682661 + | putative monovalent cation/H+ antiporter subunit D Pden_0700 682658 - 683149 + | putative monovalent cation/H+ antiporter subunit E Pden_0701 683146 - 683415 + | multiple resistance and pH regulation protein F Pden_0702 683425 - 683808 + | monovalent cation/proton antiporter, MnhG/PhaG subunit Pden_0703 683815 - 684087 + | hypothetical protein TERM 443 684097 - 684115 + T 74 -13.1 -3.23979 | opp_overlap 684097, overlap 684090 CCCTGATATGGAAAA GGGGCGG AAAAC CCGCCCC TTCATCCGTTCTGAT TERM 444 684115 - 684097 - T 100 -13.8 -4.2349 | opp_overlap 684090 684097 CCCTGATATGGAAAA GGGGCGGA AAA CCCGCCCC TTCATCCGTTCTGAT Pden_0704 685013 - 684138 - | dihydrodipicolinate synthase Pden_0705 685120 - 687270 + | lytic transglycosylase, catalytic Pden_0706 688183 - 687224 - | hypothetical protein TERM 445 687602 - 687560 - G 91 -8.5 -4.82901 | gap 2 GCCGGTCCAGAAAAA GCTGACCATGGCCGGATCG TCGCGCC CGA-CCAGCCG-GGTCAGC AGGCCATAGACCGCG Pden_0707 689034 - 688246 - | inositol monophosphatase TERM 446 688391 - 688358 - G 78 -12.3 -3.74872 | ATCGATTCGACGAAA CCGCCGGCCTCTTTC ACCA GCAGGATGCCGGCGG CCACGTCCCAGGACT Pden_0708 689804 - 689103 - | UbiC transcription regulator-associated domain-containing protein TERM 447 689339 - 689364 + g 72 -13.9 -3.14564 | opp_overlap 689336 689333 689332 GCTGGAAATCCACCG CCTCGGCGCCG GGCG CGGCGGCGGGG TTGATCCAGCGGTCC TERM 448 689778 - 689790 + g 70 -3.3 -4.46112 | GCTGGTGATGGCTTG CGCCT TGG AGGAG TTTCTTTCGGTCACA Pden_0709 691162 - 689801 - | N-formimino-L-glutamate deiminase Pden_0710 691259 - 692461 + | imidazolonepropionase Pden_0711 692454 - 693995 + | histidine ammonia-lyase Pden_0712 693992 - 694783 + | N-formylglutamate amidohydrolase TERM 449 695430 - 695481 + G 82 -15 -3.53012 | TTTCTATGCCGGGGC GCTGCCGCAGCGGGTGGGCAACCG CCAT CCCTTGTCCACCCCCTTCGGCTGC TTTGCGACGCGGGAC TERM 450 695870 - 695845 - g 75 -10.3 -4.0641 | TTCGACGGAGAGAAA CCCGTGGCCGA GACC TCGGCCCCGCG CCTTGGCGGCGACCG Pden_0713 694780 - 695928 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 451 696523 - 696495 - g 71 -10.9 -3.53811 | TTCATCCTGCCGAAA GGCACGCCGGG GCTGGAG CCGGGCGCGCC GGAAAAGACCATGGG Pden_0714 695925 - 697079 + | butyryl-CoA dehydrogenase TERM 452 698549 - 698576 + G 72 -8.4 -4.09739 | gap 1, opp_overlap 698521 GACCTGGGTGTCGCT GCACCATGGCGGC GGC GTCGGCATGG-GC TTTTCGCAGCATTCC Pden_0715 697092 - 698756 + | urocanate hydratase Pden_0716 698821 - 699639 + | extracellular solute-binding protein Pden_0717 699697 - 700344 + | polar amino acid ABC transporter, inner membrane subunit Pden_0718 700344 - 701006 + | polar amino acid ABC transporter, inner membrane subunit Pden_0719 701011 - 701781 + | ABC transporter related TERM 453 701799 - 701842 + F 73 -12.2 -3.35539 | overlap 701799 701795 701800 GGAGGGCGGGGCTTT GCTCCTGCGCCGCGCCGGAC CCTT GTCCGGGCCGTCGCGGGGGG TCTGTTTCGTTCCTC TERM 454 701800 - 701841 + F 77 -15.7 -2.606 | overlap 701799 701799 701795 GAGGGCGGGGCTTTG CTCCTGCGCCGCGCCGGAC CCTT GTCCGGGCCGTCGCGGGGG GTCTGTTTCGTTCCT TERM 455 701866 - 701878 + F 71 -7.7 -4.07687 | opp_overlap 701866 701869 GTTCCTCGCTTAAAA GATCC ACC GGATC TTTTCCGGGCGCCCT TERM 456 701878 - 701866 - f 71 -7.7 -4.07568 | opp_overlap 701866, overlap 701869 GTTCCTCGCTTAAAA GATCC ACC GGATC TTTTCCGGGCGCCCT Pden_0720 701997 - 703100 + | NADH:flavin oxidoreductase/NADH oxidase Pden_0721 704292 - 703138 - | patatin TERM 457 703966 - 703951 - G 71 -2.4 -4.56597 | opp_overlap 703955, overlap 703927 703924 GCGCGGCCGGAAAAA GCCCGG CGCC CCCAGC ATGGTGGACATGGTG Pden_0722 704567 - 704289 - | hypothetical protein TERM 458 705667 - 705692 + G 85 -16.1 -3.65351 | GGTGGCCGGCTGGAT GCCGGTCGACG AATT CGCCGACCGGC TTTCGGTGCCGCTGG Pden_0723 704594 - 705871 + | hypothetical protein TERM 459 705930 - 705950 + F 73 -11.9 -3.41878 | GTGCTTGTGATTTTC CGCAGGGTT GAT AACCTTGCG TTATGAATTCCACCC TERM 460 706459 - 706489 + G 79 -7.4 -4.42806 | overlap 706460 GCTGCGCGACGCCTT CCTGGTCGCGCTGC CGG GCGGCGACACCAGC TTTCTTTCCGGCTCC Pden_0724 705953 - 706936 + | LysR family transcriptional regulator Pden_0725 707765 - 706917 - | TonB family protein TERM 461 707276 - 707298 + g 81 -4.1 -4.82678 | gap 1, overlap 707270 707270 707276 GGGTCGTCCGCTGGC GG-GCCGG CTGCTCTT CCGGCGCC TTTTCCTTTTTCTCG TERM 462 707371 - 707396 + g 75 -5.3 -4.56597 | GGCTCCGGCTCACGT TCGGGGCGCTC GGGG GGGCGTTCGGA TTTTTGCAGCACCAC Pden_0726 708325 - 707762 - | biopolymer transport protein ExbD/TolR Pden_0727 709624 - 708329 - | MotA/TolQ/ExbB proton channel TERM 463 709112 - 709091 - G 71 -11.5 -3.61398 | opp_overlap 709090 709091, overlap 709092 CGCCTGCGGCAAGAA GCCCGAGCC GGCG GGCTCGGCC GCTTCCGGGGTCGCC Pden_0728 710752 - 709715 - | FAD-binding 9, siderophore-interacting domain-containing protein Pden_0729 711985 - 710813 - | aminotransferase, class V TERM 464 713664 - 713716 + G 72 -8.2 -4.09685 | GCCGGCCGGGCCGCG CGGCTC-GGCGCTGTCGGGCGGGCAG CGC CAGCGCGTC-GCCATCGCCCGCGCCG TTTTGCGCAATGCGC Pden_0730 712246 - 713985 + | ABC transporter related Pden_0731 713985 - 714701 + | glycine cleavage T protein (aminomethyl transferase) Pden_0732 714698 - 715789 + | DNA-directed DNA polymerase Pden_0733 716727 - 715780 - | hypothetical protein Pden_0734 716936 - 718111 + | elongation factor Tu TERM 465 718216 - 718177 - f 81 -17 -2.53759 | gap 1 AAGATCCTGAAGTGA TCCGTCAGGGGCGGCGGCC CAA GGCCGCGGCCCC-GCCGGG GACCATCCGGTGATC TERM 466 718278 - 718255 - f 93 -19.6 -2.79501 | overlap 718272 GATATCGCGATGACA GGGCCGCTCC AAAA GGAGCGGCCC TTGCCGTTGGCCCCT TERM 467 718880 - 718912 + G 76 -7 -4.34402 | opp_overlap 718865, overlap 718865 TTCCTGCGCGACCAT GCCGATT-CGACCGGC AAG GTCGG-CGCGGTCGGC TTTTGCTATGGCGGC Pden_0735 718358 - 719248 + | carboxymethylenebutenolidase Pden_0736 719300 - 719692 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_0737 719689 - 720102 + | glutathione-dependent formaldehyde-activating, GFA Pden_0738 720338 - 720991 + | hexapaptide repeat-containing transferase TERM 468 721026 - 721011 - f 73 -11.8 -3.37344 | GTCCGACGGAACGAA CCGGGC AAAG GCCCGG ACTGATGCGAATGAG Pden_0739 721049 - 722890 + | ABC transporter related Pden_0740 723027 - 723938 + | hypothetical protein Pden_0741 723963 - 724208 + | preprotein translocase, SecE subunit TERM 469 724261 - 724292 + F 73 -9.4 -3.84451 | gap 1, overlap 724262 CGACCTGCCCGTGAT ACGGCGTGCATCGAT CCG GTCG-TGCGCGCCGA TTTCAATTTGGCCGG Pden_0742 724404 - 724943 + | NusG antitermination factor rplK 725043 - 725495 + | 50S ribosomal protein L11 rplA 725499 - 726200 + | 50S ribosomal protein L1 TERM 470 726227 - 726248 + F 100 -10.8 -5.0925 | opp_overlap 726221, overlap 726230 CCCTGAAATCGGGAA GCCTCCGG CGCGAT CCGGGGGC TTTTTCATTTTGCGC TERM 471 726441 - 726476 + F 72 -11.2 -3.48276 | overlap 726443 GTCTAACGACATTCC GTTCGCGAGTGTGTGA TTCG TCATACGCTCGTGATC TTCTGTCCGAGACGG TERM 472 726443 - 726474 + F 73 -12.4 -3.31726 | overlap 726441 CTAACGACATTCCGT TCGCGAGTGTGTGA TTCG TCATACGCTCGTGA TCTTCTGTCCGAGAC rplJ 726682 - 727197 + | 50S ribosomal protein L10 rplL 727265 - 727639 + | 50S ribosomal protein L7/L12 TERM 473 727707 - 727673 - f 95 -17.1 -4.16016 | opp_overlap 727670 TGATTTCGGAAGAAA TGGGCAGGGTCCGGG GTTTT CCCGGTCCCTGCCGA ACCTGTCTTGAAGGG TERM 474 729044 - 729020 - g 74 -10.8 -3.78934 | gap 1, opp_overlap 729016 GGCGGCGGACAAGAA CATGAGCCGCG ACGG CGCG-CTCATG GACATCTATCGCGTC rpoB 727881 - 732029 + | DNA-directed RNA polymerase subunit beta Pden_0748 732032 - 732343 + | hypothetical protein TERM 475 732629 - 732607 - g 70 -9.1 -3.85698 | CTGGTCTGCGAGAAA TGCGGCGTC GAGGT GACGCTGCA AAAGGTCCGGCGCGA TERM 476 733017 - 732996 - g 77 -3.7 -4.67234 | ATTGAAGCCGAAAAA GATCATCAA GCGG CTGAAGATC GTCGAAAGCTTCCTG TERM 477 733289 - 733275 - g 70 -12.8 -3.28712 | TGCGCTGTTCGACAA CGGCCG CCG CGGCCG CGTGATCACGGGCAA TERM 478 735241 - 735231 - g 75 -8.2 -4.10429 | overlap 735221 AAGCACGCTGGAAAA CGCC AAT GGCG AGCTGATCGTGATGA Pden_0749 732340 - 736548 + | DNA-directed RNA polymerase subunit beta' TERM 479 736593 - 736572 - f 100 -17.3 -4.04415 | opp_overlap 736572 GGAAAGAACAGGAAA GGCCCGGCA TCGC TGCCGGGCC TTTTTTTATCGAGGC TERM 480 736572 - 736593 + F 100 -17.3 -5.60993 | opp_overlap 736572 GGAAAGAACAGGAAA GGCCCGGCA TCGC TGCCGGGCC TTTTTTTATCGAGGC Pden_0750 736780 - 737055 + | hypothetical protein TERM 481 737590 - 737628 + G 77 -10.9 -3.90744 | gap 1, overlap 737593 ATCTCGGCGATCATG CAGGCCCTGCCGCTTGCG GTGA CGCTGGCGGCGGCGC-TG TTCTTTCGCGAAAGG TERM 482 737593 - 737626 + G 78 -13.7 -3.54488 | overlap 737590 TCGGCGATCATGCAG GCCCTGCCGCTTGCG GTGA CGCTGGCGGCGGCGC TGTTCTTTCGCGAAA Pden_0751 737215 - 738156 + | hypothetical protein Pden_0752 738156 - 738995 + | hypothetical protein TERM 483 739168 - 739198 + F 88 -15.4 -3.39668 | overlap 739160 CCTCTGGTAATTCGA CCCGTCCTCACCCT CTT GGGGAGAGGATGGG TTGTGGCGTTTCACG rpsL 739289 - 739660 + | 30S ribosomal protein S12 TERM 484 740014 - 740002 - g 71 -2.6 -4.57569 | CGACGCTTCGAAAAA GCGC AACGA GCAC ACCATGGAAGAGCGC Pden_0754 739673 - 740143 + | 30S ribosomal protein S7 TERM 485 741724 - 741704 - g 72 -6.7 -4.34488 | overlap 741693 741706 TACACGCACAAGAAA CAGACCGGC GGT ACCGGCCAG TTCGCGCGCGTGAAG Pden_0755 740162 - 742285 + | elongation factor G TERM 486 742309 - 742335 + F 71 -13.8 -2.70932 | opp_overlap 742322 GTGCGTGGGCAACCG CGCACCCTAC CAACCCC GTAGGGTGCG TGATTGCACGCACCG Pden_0756 742372 - 743547 + | elongation factor Tu TERM 487 743652 - 743613 - T 81 -17 -2.53759 | gap 1 AAGATCCTGAAGTGA TCCGTCAGGGGCGGCGGCC CAA GGCCGCGGCCCC-GCCGGG GACCATCCGGTGATC TERM 488 743714 - 743691 - T 93 -19.6 -2.79501 | overlap 743708 GATATCGCGATGACA GGGCCGCTCC AAAA GGAGCGGCCC TTGCCGTTGGCAGAT Pden_0757 744531 - 743731 - | hypothetical protein TERM 489 744530 - 744516 - G 76 -2.8 -4.78572 | overlap 744520 GGGCAACGAACAAAA CAACGA CGA TCGTCA TCTGGACAATTCTCC TERM 490 744682 - 744715 + H 71 -7.3 -4.08948 | gap 1, overlap 744685 744686 744688 AGAATCGGTTGCCTT GTGCCGGGCCGCCATA TCA TGGGGCGGCCTG-CTC TTGTTTATACGGTTC rpsJ 744795 - 745103 + | 30S ribosomal protein S10 rplC 745114 - 745851 + | 50S ribosomal protein L3 TERM 491 746066 - 746052 - g 70 -9.2 -3.87994 | overlap 746056 ATCTATCGCCAGAAA GGCACC GGC GGCGCC CGTCACGGCAGCCGC TERM 492 746297 - 746285 - g 70 -3.3 -4.4078 | GGCGGTCAAGGAAAA CGGCT GGA AGCGG GTCCTGGTGATCGAC rplD 745851 - 746471 + | 50S ribosomal protein L4 rplW 746468 - 746764 + | 50S ribosomal protein L23 TERM 493 746787 - 746771 - f 71 -9.3 -3.78934 | opp_overlap 746779 746780, overlap 746742 746780 746781 GGCCTCTGATAAGAA GCCGACG AAT CGACGGC CCCGGCAGCGGGGCC TERM 494 746779 - 746808 + F 95 -14.9 -4.18018 | opp_overlap 746742 746771 746780 746781, overlap 746780 ATAAGAAGCCGACGA ATCGACGGCCCCG GCAG CGGGGCCGTCGCC TTTTGACTGAAACGG TERM 495 746807 - 746780 - f 93 -18.4 -3.20367 | opp_overlap 746780 746779, overlap 746742 746771 746781 TAAGAAGCCGACGAA TCGACGGCCCCG GCAG CGGGGCCGTCGC CTTTTGACTGAAACG TERM 496 746780 - 746807 + F 89 -18.4 -3.10597 | opp_overlap 746742 746771 746780 746781, overlap 746779 TAAGAAGCCGACGAA TCGACGGCCCCG GCAG CGGGGCCGTCGC CTTTTGACTGAAACG TERM 497 746806 - 746781 - f 100 -21.9 -2.51738 | opp_overlap 746780 746779, overlap 746742 746771 746780 AAGAAGCCGACGAAT CGACGGCCCCG GCAG CGGGGCCGTCG CCTTTTGACTGAAAC rplB 746860 - 747699 + | 50S ribosomal protein L2 rpsS 747703 - 747981 + | 30S ribosomal protein S19 rplV 747987 - 748367 + | 50S ribosomal protein L22 rpsC 748367 - 749089 + | 30S ribosomal protein S3 rplP 749102 - 749515 + | 50S ribosomal protein L16 TERM 498 749532 - 749565 + F 71 -13.7 -2.72144 | opp_overlap 749551, overlap 749531 749535 CGCCACCGCTTCCAG ATTGCGCCCCGCCGC GAAA GTGGCGGGGCGCTGC ATTTGCGGCGCCTCG TERM 499 749535 - 749562 + F 100 -22 -2.64155 | opp_overlap 749551, overlap 749532 749531 CACCGCTTCCAGATT GCGCCCCGCCGC GAAA GTGGCGGGGCGC TGCATTTGCGGCGCC TERM 500 749898 - 749885 - g 75 -9.5 -4.05714 | ATTCTGAACCAGAAA GCGGC GGAA GCCGC GGCGTCGAACTAAGG Pden_0767 749633 - 749911 + | ribosomal protein L29 TERM 501 750068 - 750047 - g 73 -7.3 -4.15044 | gap 1, overlap 750049 CGTTCGTCCAAGAAA TA-CCGCGCC CAT GACGCGGATA ACCAGTTCAAGGTCG TERM 502 750065 - 750049 - g 71 -11.5 -3.6761 | overlap 750047 TTCGTCCAAGAAATA CCGCGCC CAT GACGCGG ATAACCAGTTCAAGG rpsQ 749924 - 750172 + | 30S ribosomal protein S17 rplN 750236 - 750604 + | 50S ribosomal protein L14 rplX 750604 - 750909 + | 50S ribosomal protein L24 rplE 750909 - 751469 + | 50S ribosomal protein L5 rpsN 751488 - 751793 + | 30S ribosomal protein S14 rpsH 751803 - 752201 + | 30S ribosomal protein S8 TERM 503 752262 - 752233 - g 71 -2.2 -4.59773 | gap 3, overlap 752234 752235 TCGGATTGGTAAAAA GCCGGT--CGCCCTC CCC AAGGGCGTGACCG-C GGAGATCAAGGGCCA rplF 752213 - 752746 + | 50S ribosomal protein L6 rplR 752758 - 753117 + | 50S ribosomal protein L18 rpsE 753236 - 753802 + | 30S ribosomal protein S5 rpmD 753815 - 754003 + | 50S ribosomal protein L30 TERM 504 754025 - 754056 + F 87 -18.8 -2.74322 | overlap 754030 CCCCTCGCAGGATTT CGGAACGCCCCGGA GAGA TCCGGGGCGTTTTG CTTTGCCGAGTTAAC TERM 505 754030 - 754051 + F 100 -17.3 -4.54727 | overlap 754025 CGCAGGATTTCGGAA CGCCCCGGA GAGA TCCGGGGCG TTTTGCTTTGCCGAG Pden_0778 754133 - 754855 + | hypothetical protein TERM 506 755072 - 755060 - g 89 -6.9 -5.10208 | overlap 755061 CAACCGCAAGAAAAA GCGCG TTG CACGC GGCCCCGGCTCGGGC TERM 507 755161 - 755175 + G 70 -8.5 -3.86346 | opp_overlap 755160 TGAACGGCTATGAAG GCGGC CAGAT GCCGC TTTATCGCCGCCTGC rplO 755010 - 755495 + | 50S ribosomal protein L15 secY 755600 - 756973 + | preprotein translocase subunit SecY Pden_0781 757011 - 757667 + | adenylate kinase TERM 508 757747 - 757771 + F 93 -14.3 -3.9941 | CGGGGATCGCTTCAA GGCCCGAAGGC ATG GCTTTCGGGTC TTTGGTTGTGAAAAA TERM 509 757807 - 757788 - f 100 -9.3 -5.00616 | TTGGTTGTGAAAAAA GGTTCCG GCGCTA CGGAACC GCAACATGGAAAAGG TERM 510 757838 - 757828 - f 79 -2.4 -5.10154 | opp_overlap 757828 ATGGAAAAGGAAAAA CGCG TGG CTCG TATTGCTGGCGTCAA rpsM 757831 - 758199 + | 30S ribosomal protein S13 Pden_0783 758212 - 758601 + | 30S ribosomal protein S11 TERM 511 758617 - 758651 + F 100 -19.2 -4.24002 | opp_overlap 758614 758613, overlap 758576 758618 TCGGTCAAGAATTTG ACGCGTTCCGCGCGGG CTT TCCGCGCGGGGCGCGC TTTTCGCATTTCACC TERM 512 758618 - 758650 + F 100 -22.7 -3.13919 | opp_overlap 758614 758613, overlap 758576 758617 CGGTCAAGAATTTGA CGCGTTCCGCGCGGG CTT TCCGCGCGGGGCGCG CTTTTCGCATTTCAC TERM 513 759347 - 759399 + G 73 -10.4 -3.94846 | gap 1, opp_overlap 759362 CGAGACCGACGGTTC GCTGACCCCGGAAGACGC-CGTGGC CTAT GCCGCGCGCATCATCCAGGACCAGC TTTCGGTTTTCGTCA Pden_0784 758721 - 759737 + | DNA-directed RNA polymerase subunit alpha TERM 514 759773 - 759745 - f 88 -16 -3.36452 | overlap 759747 AGTTCTGAACAGGAA TACCGGGGACGC CGCCC GCGTCCCCGGAA GATCGGGCATCCCGC TERM 515 759771 - 759747 - f 93 -18.6 -3.25073 | overlap 759745 TTCTGAACAGGAATA CCGGGGACGC CGCCC GCGTCCCCGG AAGATCGGGCATCCC rplQ 759854 - 760276 + | 50S ribosomal protein L17 TERM 516 760315 - 760342 + F 100 -17 -5.01732 | TAAGCGATGGTATGG GCCCGCAGTCGC GTTC GTGGCTGCGGGC TTTTTTGCAACAGTT TERM 517 760550 - 760534 - f 72 -3 -4.59773 | gap 1, opp_overlap 760534 CGGCATTCCGAAAAA CGTCGCT CGCA AGC-ACG GTATTGCTTGAATAC TERM 518 760688 - 760673 - g 75 -4.6 -4.66833 | opp_overlap 760673 760671 CGCCAAGTTGAAAAA GCTTGC TCCG GCAGGC TATTTCATCGGGCTG Pden_0786 760626 - 761237 + | response regulator receiver protein TERM 519 761503 - 761487 - g 78 -9.3 -4.2828 | GGCGATCCATGAAAA CGGCCGG GTT CTGGCCG GCGTGCGGCTGACCC Pden_0787 761305 - 761895 + | N-acyl-L-homoserine lactone synthetase-like Pden_0788 761957 - 763285 + | recombination factor protein RarA Pden_0789 763282 - 763656 + | CrcB protein Pden_0790 763653 - 764699 + | RluA family pseudouridine synthase TERM 520 764936 - 764954 + G 77 -11.6 -3.85698 | ATCGCCTCGCGCGCG GCGGGGGC GCT GCCGCCGC TTTATCCCGGCGCGC Pden_0791 764696 - 765358 + | HAD family hydrolase Pden_0792 765351 - 766061 + | ATP12 ATPase TERM 521 766053 - 766069 + F 79 -5.7 -4.65969 | overlap 766049 TTCTGGCATCTCACC CGCGGCT GAC GGGCGCG TTTTGGTTCTTTCTT Pden_0793 766214 - 767239 + | cationic amino acid ABC transporter, periplasmic binding protein TERM 522 767288 - 767255 - f 85 -12.3 -4.1822 | TCGCATCTGAACAAA GGGTGTGCGGGGG CGCATGTC CCCCCGCGCGCCC CGAATGAAAGCCGGC Pden_0794 767355 - 768608 + | polar amino acid ABC transporter, inner membrane subunit Pden_0795 768610 - 770064 + | polar amino acid ABC transporter, inner membrane subunit Pden_0796 770075 - 770848 + | ABC transporter related TERM 523 770871 - 770907 + F 100 -16.6 -4.86731 | gap 2, overlap 770874 TGCCGTGGGGGCGTC GCGCGCCCCTGCGGCCGG CCG CTGGCCGT-GGGGCG-GC TTTTCTTTGCCGGGG TERM 524 770874 - 770905 + F 87 -18 -2.70452 | gap 1, overlap 770871 CGTGGGGGCGTCGCG CGCCCCTGCGGCCGG CCG CTGGCCGT-GGGGCG GCTTTTCTTTGCCGG Pden_0797 770948 - 771850 + | hypothetical protein TERM 525 771867 - 771907 + T 84 -14 -3.6682 | gap 1, opp_overlap 771875, overlap 771868 771875 TCCCCGGCCCGGTCC ATGAGAAAGGCGCGCAGGG CCGG CCC-GCGCGCCTTTCCCGG TTTCCGTCCGTCCGG TERM 526 771868 - 771906 + T 87 -17.5 -2.79878 | gap 1, opp_overlap 771875, overlap 771867 771875 CCCCGGCCCGGTCCA TGAGAAAGGCGCGCAGGG CCGG CCC-GCGCGCCTTTCCCG GTTTCCGTCCGTCCG TERM 527 771899 - 771875 - T 95 -16.4 -3.96148 | opp_overlap 771868 771867 771875 CCGGTCCATGAGAAA GGCGCGCAGG GCCGG CCCGCGCGCC TTTCCCGGTTTCCGT TERM 528 771875 - 771899 + T 87 -15 -3.64236 | gap 1, opp_overlap 771875, overlap 771868 771867 CCGGTCCATGAGAAA GGCGCGCAGGG CCGG CCC-GCGCGCC TTTCCCGGTTTCCGT Pden_0798 772783 - 771923 - | aminotransferase, class IV TERM 529 772078 - 772103 + g 72 -13.3 -3.12803 | overlap 772034 772044 772076 CCTCGTCCGCCGCCT GCGCCTCTTCG ATGG TGAAGGGGCGC TCTTCGATCTGCATC TERM 530 772379 - 772389 + g 75 -8.2 -4.13945 | opp_overlap 772378 GGGGATCGAGATCAC CCGG ATG CCGG TTTTCGCCTGCGGAT TERM 531 773409 - 773452 + G 79 -10.9 -4.07687 | gap 1, opp_overlap 773402, overlap 773410 GTCGAAGAGATCGCG GCCGCCTCGCCCCGGTTGCA GGCGA TG-AGCCTGGGCGCGGCGGA TTTTGCCGCCAGCAT Pden_0799 772881 - 773906 + | citrate (pro-3S)-lyase TERM 532 773965 - 773996 + T 100 -22.4 -2.70932 | opp_overlap 773968, overlap 773968 ATGACAGGGGAGGAG CAACAGGCCCTGCG GCTG CGCGGGGCCTGTTG TCATTCAGGCCGGGC TERM 533 773993 - 773968 - T 86 -16.1 -3.21925 | opp_overlap 773965 773968 ACAGGGGAGGAGCAA CAGGCCCTGCG GCTG CGCGGGGCCTG TTGTCATTCAGGCCG TERM 534 773968 - 773993 + T 93 -18.3 -3.50853 | opp_overlap 773968, overlap 773965 ACAGGGGAGGAGCAA CAGGCCCTGCG GCTG CGCGGGGCCTG TTGTCATTCAGGCCG TERM 535 774210 - 774238 + T 85 -12.3 -4.15044 | GGGCATGGCGGGCAG CAGGCCGCCGGAG ATG CTCCGGTTGCCGG TTTCTTCCGCGCCCG Pden_0800 775946 - 774324 - | ABC transporter related Pden_0801 776755 - 775943 - | binding-protein-dependent transport systems inner membrane component TERM 536 776721 - 776690 - G 100 -15.8 -4.03234 | CGGCGTCCAGACAAA CGAGGCCAGCGCCG CGGC CAGCGCCAGCCCCG ACAGCAGGGTGCCGA Pden_0802 777690 - 776752 - | binding-protein-dependent transport systems inner membrane component Pden_0803 779373 - 777739 - | protein of unknown function DUF894, DitE TERM 537 779849 - 779887 + G 74 -11.7 -3.76224 | gap 1, opp_overlap 779831 TGTTCCAGCGCCATG CGCCGCTGGTCGTCCAGC CCCG GCTGGACTGGCAGCG-CG TTTCCTGGATGGCGC TERM 538 779962 - 779948 - g 91 -11.4 -4.63486 | ATGCCGTCAATAAAA GCCGCA TGG TGCGGC TGGCCGAATACAGCC TERM 539 780559 - 780528 - g 73 -12.2 -3.40299 | GGACGAGACCTACAA GGTCGCGATCACCC GCCT GGGCGACCGCATCC GCGTCGGCGGGCTGG Pden_0804 779632 - 780933 + | D-amino acid dehydrogenase small subunit TERM 540 780976 - 780956 - T 100 -15.4 -4.7497 | opp_overlap 780956 GGCAGGCATGAAAAA GGGGGCCC GTTCA GGGCCCCC TTTCTGGCAATTCGG TERM 541 780956 - 780976 + T 93 -15.4 -3.89614 | opp_overlap 780956 GGCAGGCATGAAAAA GGGGGCCC GTTCA GGGCCCCC TTTCTGGCAATTCGG Pden_0805 781257 - 780997 - | transglycosylase-associated protein Pden_0806 781526 - 781254 - | hypothetical protein Pden_0807 781572 - 782318 + | ErfK/YbiS/YcfS/YnhG family protein TERM 542 782344 - 782370 + F 100 -18 -4.64048 | TCTGCCGCTCTTTCG CGCCCCGGCC CGTCCAC GGCCGGGGCG TTTCTTTCTCTGGTC Pden_0808 782443 - 782997 + | hypothetical protein Pden_0809 783068 - 783979 + | lytic transglycosylase, catalytic TERM 543 783978 - 784004 + T 83 -14.5 -3.24021 | opp_overlap 783977 783976 783981, overlap 783982 TCGTGCTGAAGAACT GAAGCGCCGCA CCGGC TGCGGCGTTTC TTGAGTATTTGAGGA TERM 544 783982 - 784000 + T 88 -11.7 -4.27007 | opp_overlap 783981 783977 783976, overlap 783978 GCTGAAGAACTGAAG CGCCGCA CCGGC TGCGGCG TTTCTTGAGTATTTG Pden_0810 785524 - 784055 - | extracellular solute-binding protein Pden_0811 786273 - 785581 - | phosphatidylcholine synthase Pden_0812 787243 - 786368 - | phosphoserine phosphatase SerB TERM 545 787108 - 787092 - G 70 -9.3 -3.86015 | overlap 787093 CAGGCCTGCCAGAAA TCCGCCG GTT CGGCGGC GAGGGGAAATTCCGC TERM 546 787328 - 787346 + H 100 -7.4 -5.4505 | overlap 787330 CATACCGGGAATCTG TCGCAAGC ATG GCTTGCAA TTTTTTCTTGCGAGA TERM 547 787458 - 787478 + G 78 -6.8 -4.63218 | opp_overlap 787447 AAGACTGCTCCGGCC GCGCGG CCGGCCAAT CCGCGC TTTTCTTCGGGCCCC Pden_0813 787437 - 788591 + | phosphoserine aminotransferase TERM 548 788991 - 788967 - g 71 -11.4 -3.61398 | overlap 788987 GGCCGCCTCGAAGAA GGGCGTGATC GTGAT GAACACGCCC TTCGGCAACAGTGTC Pden_0814 788704 - 790293 + | D-3-phosphoglycerate dehydrogenase TERM 549 790298 - 790331 + F 100 -19.7 -3.53012 | opp_overlap 790304, overlap 790304 TCGAGGTTTGAACCT TGCAAACCCCCGGAC TAGG GTCCGGGGGTTTTCA TTTGCGGGGGCGGCA TERM 550 790304 - 790325 + F 100 -17.3 -4.54727 | opp_overlap 790304, overlap 790298 TTTGAACCTTGCAAA CCCCCGGAC TAGG GTCCGGGGG TTTTCATTTGCGGGG TERM 551 790325 - 790304 - f 93 -17.3 -3.57561 | opp_overlap 790304 790298 TTTGAACCTTGCAAA CCCCCGGAC TAGG GTCCGGGGG TTTTCATTTGCGGGG Pden_0815 790346 - 791074 + | metallophosphoesterase TERM 552 791337 - 791360 + G 72 -5.2 -4.42062 | gap 1 ATGGTGCTGGGGCGG GGCACGCGCAC CGG GT-TGCGGGCC TTTGTTTCCGGGCTG Pden_0816 791211 - 792839 + | sodium-dependent inorganic phosphate (Pi) transporter Pden_0817 793035 - 793496 + | CreA family protein Pden_0818 793728 - 794060 + | hemimethylated DNA binding protein Pden_0819 794630 - 794073 - | putative anti-sigma regulatory factor, serine/threonine protein kinase Pden_0820 794992 - 794627 - | anti-sigma-factor antagonist Pden_0821 795231 - 795608 + | hypothetical protein TERM 553 797690 - 797707 + G 71 -2.5 -4.56597 | ACCGGCAATGCCCAT GCCAACC GGCT GGAGGGC TTTTTCGGCAACGAC Pden_0822 795629 - 798091 + | peptidase domain-containing protein TERM 554 798155 - 798167 + F 74 -4.7 -4.47873 | overlap 798152 798156 TTTCCGCCTCCCCCG AGCCG TGC CGGCC TTTTCTGCCTGTTAT Pden_0823 798302 - 799714 + | hypothetical protein Pden_0824 799729 - 800688 + | hypothetical protein Pden_0825 800699 - 801505 + | transglutaminase domain-containing protein Pden_0826 801536 - 802294 + | 20S proteasome, A and B subunits Pden_0827 804943 - 802307 - | DNA mismatch repair protein TERM 555 802482 - 802515 + g 74 -12.3 -3.58343 | gap 1, opp_overlap 802462 AGGTCGTCGAGCAGC GCGGCGGGCTTGCCGG TGC CCTGCC-GCTCGCCGC TTTCCAGCTGGTGCA TERM 556 805408 - 805444 + G 100 -14.4 -4.56775 | gap 2, overlap 805431 GATGCTGCTGCCGGA CGGGGCGCGGCTCAGCCT CAA GGGC-G-GCCGCGACCCG TTTTTCGAGGCCGAT Pden_0828 805100 - 805939 + | hydratase/decarboxylase Pden_0829 806084 - 807190 + | extracellular solute-binding protein TERM 557 807227 - 807191 - f 89 -15.2 -3.71848 | gap 2, opp_overlap 807192, overlap 807192 GCGGTCCAGGAATAA GGCGCGGCGGCCCCGC TTGGATG GCGGGGCCGCC-C-CC GAACTTGCGAGACGG TERM 558 807227 - 807192 - f 80 -15.4 -2.82895 | gap 1, opp_overlap 807192, overlap 807191 CGGTCCAGGAATAAG GCGCGGCGGCCCCGC TTGGATG GCGGGGCCGCCCC-C GAACTTGCGAGACGG TERM 559 807270 - 807282 + G 82 -6.9 -4.70879 | CGGCTGGAACTGGCT GGGCG TGG TGCCC TTTTTCGCCTTTGCG Pden_0830 807211 - 808092 + | binding-protein-dependent transport systems inner membrane component Pden_0831 808089 - 808871 + | binding-protein-dependent transport systems inner membrane component TERM 560 809760 - 809811 + G 73 -12.8 -3.53012 | gap 1 TCGAGTTCCTGGGCT CGGTCCAGCGCCTGCGGGCG-CGGG CGG CCGGGCGCGAGGTGGTGCTGGACCG TTTCAACGAACCGGG Pden_0832 808868 - 809902 + | ABC transporter related Pden_0833 810408 - 812123 + | hemolysin-type calcium-binding region TERM 561 812129 - 812157 + T 81 -7.4 -4.52589 | overlap 812130 CTGGACCTGAGCCTC G-GGGGCGTCCGCG ACC TGCGG-CGTCCCTC TTTTATCTGGGCGCC TERM 562 812130 - 812155 + T 79 -11.1 -3.87627 | gap 1, overlap 812129 TGGACCTGAGCCTCG GGGGCGTCCGCG ACC TGCGG-CGTCCC TCTTTTATCTGGGCG Pden_0834 812933 - 812160 - | WecB/TagA/CpsF family glycosyl transferase TERM 563 813896 - 813908 + G 78 -9.1 -4.34402 | overlap 813886 GGTGGCGGCGCTGGT GGCCA CCG TGGCC TTTTCCTATCCGACG TERM 564 814052 - 814089 + G 72 -14.1 -3.23572 | gap 1, overlap 814050 GGAGCGCGCGATGGA GCGGCCGGTCTTCGGCTG GGG CGGCTGGGGG-CGGCCGC TGTTCTACGATCCCT Pden_0835 813051 - 814475 + | hypothetical protein TERM 565 817642 - 817678 + G 75 -9.4 -4.1711 | gap 1 GCGCGCGTTTCCGCC CCG-GCTCCAGCCTGCT CAAC AGCCAGTTGGAGCGCGG TTTCTTCGGCCTGCT TERM 566 817945 - 817979 + G 76 -14.3 -3.53343 | opp_overlap 817928 CGCTGGCCCCCTCGG GCGCCGCC-GTCGCCGC ATG GCG-CGACGGGCGCCGC TTTGAGCAAAGCCTT Pden_0836 814575 - 820856 + | beta-ketoacyl synthase TERM 567 821542 - 821509 - g 77 -14.5 -3.17051 | gap 1, overlap 821507 821511 TCTTTACTACGAAGA GACCGACCTGTGCCGC CGT GCGGCGCAGG-CGGGC TGGCAGACCCATTAC TERM 568 821540 - 821511 - g 77 -15.7 -3.14693 | gap 1, overlap 821509 821507 TTTACTACGAAGAGA CCGACCTGTGCCGC CGT GCGGCGCAGG-CGG GCTGGCAGACCCATT Pden_0837 820859 - 821851 + | glycosyl transferase family protein TERM 569 822475 - 822417 - g 87 -18.1 -3.28712 | opp_overlap 822417 822414 TGTCGGCCGCGACAA GCGCCCCGAAGC-CGCGGCGGTGCTGGAT TTT ACGCAGC-CCGCCGCGCGGATCGGCGCGC TGGTGCGCGGTCTCG TERM 570 824314 - 824298 - g 79 -5 -4.72272 | opp_overlap 824273 824313, overlap 824300 GGCGGTCACGAAAAA CGTCGC CGTCC GCGCCG GCAGTTGCGTGCTGC TERM 571 824869 - 824858 - g 73 -7.2 -4.17425 | AGAACTACCTGAAAA GCGC CGCG GCGC TGGTCAAGCAATATG Pden_0838 821848 - 826473 + | amino acid adenylation domain-containing protein TERM 572 826528 - 826566 + G 72 -8.7 -4.07568 | gap 1, overlap 826526 TGCCCGCGGGCTACG GCTGTGC-GGTGCTGCCG CTTG CGGCCGAACCCGCGCCGC TTTTGCCCGAGGAGG Pden_0839 826470 - 827093 + | 4'-phosphopantetheinyl transferase Pden_0840 828279 - 827074 - | glycosyl transferase, group 1 Pden_0841 828462 - 828674 + | hypothetical protein Pden_0842 829366 - 828668 - | undecaprenyl-phosphate galactose phosphotransferase TERM 573 830329 - 830318 - g 73 -7.2 -4.11216 | CGCTGACCGGGAAAA GCCC TGTC GGGC TGACCAACCAGATCC Pden_0843 829672 - 830442 + | hypothetical protein Pden_0844 831266 - 830439 - | glycosyl transferase family protein TERM 574 831482 - 831506 + H 78 -12.7 -3.53012 | opp_overlap 831476, overlap 831483 GGAAAGTCATCGGCA GGCCGCCGCCC CTG GGGCGGCGCCA TTTCACCAGAGGCAG TERM 575 831483 - 831505 + H 78 -16.2 -2.71712 | opp_overlap 831476, overlap 831482 GAAAGTCATCGGCAG GCCGCCGCCC CTG GGGCGGCGCC ATTTCACCAGAGGCA TERM 576 831760 - 831782 + G 95 -14.8 -4.38712 | TTGGCCGTGGTTCCG GTGACGCCGG GCG CCGGCGGCAC TTTTGTCGCGGTGAA TERM 577 832005 - 832021 + G 72 -9.3 -4.07568 | CCCGGAGCGGGCCGA GCCCGGC GCG GCCGAGC TTTTGCAGGACGAGG Pden_0845 831535 - 832272 + | ATPases involved in chromosome partitioning-like Pden_0846 832333 - 833799 + | lipopolysaccharide biosynthesis Pden_0847 833799 - 835172 + | polysaccharide biosynthesis protein Pden_0848 835257 - 837539 + | malic enzyme TERM 578 837555 - 837585 + T 91 -16.8 -3.44229 | opp_overlap 837560, overlap 837559 837560 CCGGCCGCCCGAAAC GAAAAGCGCCCCCG GAG CGGGGGCGCCTTGC TTGTCGTGGTGGGAT TERM 579 837559 - 837581 + T 90 -16.2 -3.48036 | opp_overlap 837560, overlap 837555 837560 CCGCCCGAAACGAAA AGCGCCCCCG GAG CGGGGGCGCC TTGCTTGTCGTGGTG TERM 580 837580 - 837560 - T 100 -19.7 -4.54727 | opp_overlap 837559 837555 837560 CGCCCGAAACGAAAA GCGCCCCCG GAG CGGGGGCGC CTTGCTTGTCGTGGT TERM 581 837560 - 837580 + T 90 -19.7 -2.6834 | opp_overlap 837560, overlap 837559 837555 CGCCCGAAACGAAAA GCGCCCCCG GAG CGGGGGCGC CTTGCTTGTCGTGGT Pden_0849 838199 - 837600 - | putative outer membrane protein Pden_0850 839389 - 838421 - | rhodanese domain-containing protein Pden_0851 839444 - 840040 + | nicotinamidase Pden_0852 840040 - 841347 + | nicotinate phosphoribosyltransferase nadE 843187 - 841517 - | NAD synthetase TERM 582 844210 - 844197 - g 72 -3.7 -4.56597 | GGGTGCGCTGAAAAA CGACC TGCC GGACG GGCGTGGCATGATCA TERM 583 844713 - 844683 - g 76 -13.3 -3.41051 | gap 1 CGAGTGGGAGGACAA CCGGCTGGCCGCCC CCTC GGGCGAC-AGCCAG GAGCCGGAGGACGGC Pden_0854 843319 - 844785 + | MORN repeat-containing protein Pden_0855 845389 - 844892 - | xanthine-guanine phosphoribosyltransferase Pden_0856 846001 - 845399 - | lysine exporter protein LysE/YggA Pden_0857 846838 - 846011 - | enoyl-(acyl carrier protein) reductase Pden_0858 846922 - 847584 + | pyridoxamine-phosphate oxidase Pden_0859 847715 - 848308 + | cold-shock DNA-binding domain-containing protein TERM 584 848308 - 848326 + G 79 -3 -4.91459 | opp_overlap 848310, overlap 848309 848310 CGCGGGCGCGGTATG AAGTTGCG GGC CGCAACGG TTTTTCTAGCTCTTC Pden_0860 848305 - 848799 + | hypothetical protein TERM 585 848782 - 848827 + F 75 -6.7 -4.35524 | gap 1 CCGCAGGACGGCGCG CTGGCGCCCTGCG-ACTGAGGC GGC GCGTCGGAACGAACGGCGTCAG TTTTCCCTTTCCCCC TERM 586 849318 - 849359 + F 76 -14.4 -3.14132 | gap 1, opp_overlap 849300, overlap 849301 TAGCCGCTGGCGCGA CCGCAGCGGCGCCTAGGTC TTGGC GGCC-AGGCGCCGCTCCAG TTCCTCCAGCGCGGC Pden_0862 849700 - 850956 + | aspartate kinase TERM 587 851069 - 851043 - g 84 -15.9 -3.53012 | gap 1, overlap 851007 851008 851044 TGCGGCTGCGCGAAA CCTTGGCCGCCC CCGG GGGCGGCCA-GG ACCGTCTGGACCAGA TERM 588 851069 - 851044 - g 74 -16.1 -2.71712 | overlap 851043 GCGGCTGCGCGAAAC CTTGGCCGCCC CCGG GGGCGGCCAGG ACCGTCTGGACCAGA TERM 589 851668 - 851644 - g 75 -6.4 -4.4078 | gap 1 TCCGCTGAAGGAAAA GGCC-CGGC TGAACGAG GCCGTGGCC ATGCTGCGCACCACC Pden_0863 850988 - 853231 + | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 590 853312 - 853269 - T 72 -6.7 -4.25104 | gap 3, opp_overlap 853288 GGCCTGTCAGGAAAA GC-GCAGGCGCCCGTC-CGAGC CTT GCTCGCGCCGGAC-CCTGATGC CGTAAAGCCGGGTCA Pden_0864 854033 - 853260 - | ABC transporter related Pden_0865 854989 - 854021 - | transport system permease protein Pden_0866 856037 - 855006 - | periplasmic binding protein TERM 591 855921 - 855897 - G 76 -13.5 -3.53012 | GGGGCCGGCGGCAAA GACCCGCGCCG GAT CGGCGGGGATC TGCACCGTGCGACCC Pden_0867 856495 - 856034 - | hypothetical protein Pden_0868 856622 - 856488 - | hypothetical protein Pden_0869 857168 - 856647 - | hypothetical protein Pden_0870 857422 - 857712 + | hypothetical protein Pden_0871 859314 - 857878 - | integral membrane sensor signal transduction histidine kinase TERM 592 858391 - 858422 + g 73 -16.6 -2.62263 | gap 1, overlap 858386 GCGCGACAGGGCCGG CGCCGGCTCTTCGGC CTT GCCGAAG-GCCAGCG TCGTCTCGCACAGGT TERM 593 858579 - 858601 + g 82 -9 -4.4078 | overlap 858573 TGCGAGCCACGGCCT GGCCCAGCTG CGC CAGCCGGTCC TTTTGCTTCAACGCC Pden_0872 859553 - 859690 + | ribosomal protein L34 TERM 594 859744 - 859790 + G 73 -12.4 -3.39668 | gap 3, opp_overlap 859743 859742 AGCGCCACCAGAACC GCCGCCGCTGACCGGACCGTCGC AGAT GCGAT--TCCGGACAG-GGCGGC TTCTGACGTTTCGGG Pden_0873 859720 - 860169 + | ribonuclease P protein component Pden_0874 860166 - 860408 + | hypothetical protein TERM 595 860391 - 860416 + F 90 -16.1 -3.80573 | GTGCCGGGGAGCGAG GCGCCGCGGCA GGAC TGACGCGGCGC TTTCATGCTAATCAG Pden_0875 860460 - 861353 + | PP-loop domain-containing protein TERM 596 862587 - 862625 + G 77 -14.5 -3.22298 | gap 1 GCGGTGCAGGGGCCG GCCGTGGTGCCGCCGCTG GAGG CTGCGGCGGT-CGACGGC TTCCTGCTGGATCGC Pden_0876 861414 - 862685 + | diguanylate phosphodiesterase TERM 597 862792 - 862816 + F 72 -8.5 -4.08692 | opp_overlap 862812, overlap 862793 AAGGCGGGCAGAGCC TCGGGTCGGGT GGA AACTGACCCGG TTTTCCGGCAAATTC TERM 598 864461 - 864491 + G 80 -16.8 -3.1506 | overlap 864449 GAACCTGTTCGGCCT GCTGCCCTGGGCGG CGC CGGGCCAGGGCAGC TTCCTGCACAGCTTT Pden_0877 862908 - 864815 + | putative inner membrane protein translocase component YidC Pden_0878 864812 - 865570 + | MOSC domain-containing protein Pden_0879 865567 - 866217 + | GTPase EngB Pden_0880 866295 - 867209 + | acetylglutamate kinase Pden_0881 867318 - 867836 + | putative phosphohistidine phosphatase, SixA Pden_0882 868792 - 867833 - | ribokinase-like domain-containing protein Pden_0883 869199 - 868792 - | hypothetical protein TERM 599 869258 - 869238 - H 76 -2.5 -4.89852 | overlap 869239 869253 CGATATGGACAAAAA CCGCCGTTT GTG AAAGAGCGA AGCGGACAGGAGACC TERM 600 869681 - 869709 + G 95 -14.5 -3.97947 | ACAAGGACAGGCTGC GCGCCGAGGGCCG TGC CGGCTATTGGCGC TTTCTGCTGGATCAG gltX 869278 - 870603 + | glutamyl-tRNA synthetase Pden_0885 870937 - 870566 - | hypothetical protein TERM 601 870629 - 870648 + g 88 -15 -3.71649 | opp_overlap 870629 GGTGCAATGCGAAAA GGCCGCCT GGGA AGGCGGCC TTTGCCATTTCGAGA TERM 602 870648 - 870629 - G 95 -15 -4.19238 | opp_overlap 870629 GGTGCAATGCGAAAA GGCCGCCT GGGA AGGCGGCC TTTGCCATTTCGAGA TERM 603 870796 - 870835 + g 76 -13.4 -3.53012 | opp_overlap 870801, overlap 870798 AGTTCCCTGCCGTTT CACAACCGGGCGGGGGCA GACA TGCACCCGCCCGGTCAGG TTTGAACAAACAACA TERM 604 870830 - 870801 - G 91 -20.7 -3.28712 | opp_overlap 870798 870796 CCTGCCGTTTCACAA CCGGGCGGGGGCA GACA TGCACCCGCCCGG TCAGGTTTGAACAAA Pden_0886 871051 - 871317 + | hypothetical protein TERM 605 871699 - 871673 - g 74 -13 -3.59262 | opp_overlap 871688, overlap 871676 GGCGAGACCTGGAAA GAGGGCGACGAC GTC GTCGTCACCGTC GCCTATGAGGCGCTG tig 871325 - 872704 + | trigger factor TERM 606 872723 - 872756 + T 77 -13.2 -3.40403 | opp_overlap 872730, overlap 872724 872730 GCGTTTTGATCGCGA TGAGAGAGGCCGCC CATTGA GGCGGCCTTTTTCG TTGTCGTGCCAAGGC TERM 607 872724 - 872755 + T 74 -14.5 -2.64099 | opp_overlap 872730, overlap 872723 872730 CGTTTTGATCGCGAT GAGAGAGGCCGCC CATTGA GGCGGCCTTTTTC GTTGTCGTGCCAAGG TERM 608 872749 - 872730 - T 71 -12.8 -2.94416 | opp_overlap 872724 872723 872730 GATCGCGATGAGAGA GGCCGCCC ATTG AGGCGGCC TTTTTCGTTGTCGTG TERM 609 872730 - 872749 + T 100 -12.1 -4.94972 | opp_overlap 872730, overlap 872724 872723 GATCGCGATGAGAGA GGCCGCC CATTGA GGCGGCC TTTTTCGTTGTCGTG Pden_0888 873701 - 872907 - | hypothetical protein TERM 610 873807 - 873842 + r 76 -9.7 -4.13767 | opp_overlap 873815, overlap 873815 GCTGCCGTCCGGGCA TGAAAAAACGCGCCG AGGTTG CGGCGCGTTCTTCCG TTTTCCGATGAAGGC TERM 611 873834 - 873815 - R 100 -12.1 -5.14563 | opp_overlap 873807 873815 CCGGGCATGAAAAAA CGCGCCG AGGTTG CGGCGCG TTCTTCCGTTTTCCG TERM 612 873815 - 873834 + r 81 -12.1 -3.81879 | opp_overlap 873815, overlap 873807 CCGGGCATGAAAAAA CGCGCCG AGGTTG CGGCGCG TTCTTCCGTTTTCCG rplI 874446 - 873862 - | 50S ribosomal protein L9 rpsR 874686 - 874459 - | 30S ribosomal protein S18 rpsF 875100 - 874705 - | 30S ribosomal protein S6 TERM 613 875292 - 875256 - H 79 -15.2 -3.03635 | gap 1, overlap 875275 875276 GAAAGTGCCGCAAGA TCGCCGCTGCGGCGAAA CAGT TTCCGC-GCTGCGGCGA AACACGAAAATGTCA Pden_0892 875389 - 875970 + | YceI family protein TERM 614 875992 - 876023 + T 75 -14.5 -2.75343 | opp_overlap 875998, overlap 875998 GCACGGATCGCAAGC GAAAAAGGGGCCC CCGAGA GGGCCCCTTTGTC ATTTCCGCCTGTGCG TERM 615 876017 - 875998 - T 100 -12.8 -4.74504 | opp_overlap 875992 875998 ATCGCAAGCGAAAAA GGGGCCCC CGAG AGGGCCCC TTTGTCATTTCCGCC TERM 616 875998 - 876017 + T 85 -12.1 -4.13654 | opp_overlap 875998, overlap 875992 ATCGCAAGCGAAAAA GGGGCCC CCGAGA GGGCCCC TTTGTCATTTCCGCC Pden_0893 877065 - 876043 - | cytochrome-c peroxidase Pden_0894 877258 - 878313 + | peptide chain release factor 1 Pden_0895 878318 - 879145 + | HemK family modification methylase TERM 617 879147 - 879173 + F 71 -8.1 -4.10855 | gap 1, overlap 879144 879165 GCAACCCGCTTTGAT CCGGC-AAGGAT CCGC ATCTTTCGCCGG TTTTGGCGAAATTTT TERM 618 879165 - 879184 + F 77 -8.6 -4.3208 | overlap 879147 879179 GCAAGGATCCGCATC TTTCGCCG GTTT TGGCGAAA TTTTCGCTTGTAAGC Pden_0896 879393 - 880181 + | hypothetical protein TERM 619 880176 - 880166 - T 77 -8.2 -4.30576 | GGCCCAGCAGGAAAA CGCC TCG GGCG AGTGAATGTCAGCGC TERM 620 880223 - 880183 - T 72 -12.7 -3.05384 | gap 4 CCTCGGGCGAGTGAA TGTCAGCGC-GGCGCGGCGGC CAG GCC-CCGCGCCAGCGC-G-CA GAACTGCTCCAGCCC ksgA 881033 - 880185 - | dimethyladenosine transferase pdxA 881998 - 881030 - | 4-hydroxythreonine-4-phosphate dehydrogenase Pden_0899 883337 - 882066 - | PpiC-type peptidyl-prolyl cis-trans isomerase Pden_0900 885783 - 883369 - | organic solvent tolerance protein TERM 621 883652 - 883663 + g 72 -5.8 -4.37711 | opp_overlap 883651, overlap 883660 GTCAGTTCGGAAACG TCGC TTTC GCGA TTTTCGCTTTCATCC Pden_0901 886904 - 885783 - | permease YjgP/YjgQ family protein TERM 622 885885 - 885827 - G 82 -17.3 -3.09718 | gap 1, opp_overlap 885837 885838, overlap 885824 885825 CAAGGGCGAAAAGCA GCGCCACGATGGGCGGCGCCCAGCCGGC CAGG GCCGGCGGGATGCCG-CCATTGTCGCCC AGCACCTGCGCCAGG TERM 623 885837 - 885876 + g 89 -18.4 -3.28712 | opp_overlap 885824 885825 885827, overlap 885838 AAGCAGCGCCACGAT GGGCGGCGCCCAGCCGGC CAGG GCCGGCGGGATGCCGCCA TTGTCGCCCAGCACC TERM 624 885838 - 885875 + g 85 -21.9 -2.57132 | opp_overlap 885824 885825 885827, overlap 885837 AGCAGCGCCACGATG GGCGGCGCCCAGCCGGC CAGG GCCGGCGGGATGCCGCC ATTGTCGCCCAGCAC TERM 625 886427 - 886461 + g 70 -12.9 -3.28924 | CGTCCCCGTTCCCGT TGCGCGTC-GGCAGCGC CTG GCGCAGCCAGAC-CGCA TTGTCGCCGACGCTG Pden_0902 888049 - 886901 - | permease YjgP/YjgQ family protein Pden_0903 888179 - 889780 + | leucyl aminopeptidase TERM 626 889772 - 889794 + F 72 -11.3 -3.50393 | opp_overlap 889771 889772 889774 GACCGCTTCGAGAAG CAGGGCTGA TGGGT TCGGCCCTG TTCTATCACCTGACC Pden_0904 889780 - 890229 + | DNA polymerase III subunit chi Pden_0905 890858 - 890283 - | hypothetical protein Pden_0906 891469 - 890858 - | multiple antibiotic resistance (MarC)-related proteins TERM 627 890986 - 890932 - G 78 -10.1 -4.12188 | gap 3, overlap 890970 GCAGCATGCCGAAAA GCCGGG-TGA-CGACCATGGTGCCGG TGCGGC CCAGCAC-ATGGGCGATCGGCCCGGC GACGGCGAACAGCGC TERM 628 891842 - 891815 - g 74 -12 -3.66018 | gap 1, overlap 891816 CGAGGACGCCAAGAA GCCCATCGGCCAG AGC CCGGCCGA-GGAC GCGACCCGCGCCCAG Pden_0907 891636 - 891914 + | sec-independent translocation protein mttA/Hcf106 Pden_0908 891933 - 892436 + | twin-arginine translocation protein, TatB subunit TERM 629 892546 - 892560 + G 70 -4.2 -4.50976 | overlap 892547 GGTCGGTCCTGGCCT TCGTCG TGG CGATGG TTTTGTGCTATACGG Pden_0909 892437 - 893279 + | Sec-independent protein translocase, TatC subunit Pden_0910 893272 - 894114 + | hypothetical protein TERM 630 894130 - 894169 + T 100 -12.9 -5.54264 | TTGCACGGGCTTTTC CACGCG-GGTGGCGGCGGT TTTG GTCGC-GCCGCCGCGCGTG TTTTTTTGAGTATTT TERM 631 894266 - 894256 - T 71 -4 -4.57073 | opp_overlap 894240 CAGGTTGGTCAAAAA CTTT GAC AAAG CTGCTTTCGGCCCCT TERM 632 894597 - 894581 - T 71 -7.9 -4.07568 | overlap 894582 CGCCTTTGCTGAAAA GCCGGTG ACG CACCGGG TATGCGGCGGCGGCG Pden_0911 895712 - 894663 - | choloylglycine hydrolase Pden_0912 896078 - 895740 - | hypothetical protein Pden_0913 897765 - 896404 - | homogentisate 1,2-dioxygenase TERM 633 896839 - 896782 - G 74 -13.3 -3.27923 | GCGGAACAGCACGAA GTCGATATTCGCCGTGCCCTCCTGGCC CGAG GGCGCGGTCAGCACGGTGAAGATCGAC GGGTCGGGATGGTCG TERM 634 897175 - 897124 - G 70 -12.9 -3.25942 | opp_overlap 897172 ATTCTCGCAGACGAA GCCGCG-GGCCGGGCCCTCCAGCAC CTCG ACGC-GGTAGACCAGGCCGCGCGGC AGGATGGCGATTTCC TERM 635 897959 - 897986 + G 82 -14.8 -3.53012 | overlap 897953 CTGTCCGTGGCGGCC GCGCGGCTGAGC CGCC GCTTTGCCGCGC TTTACGAGGCCGAAG Pden_0914 897908 - 898339 + | MarR family transcriptional regulator TERM 636 898431 - 898412 - T 75 -4.2 -4.65895 | gap 1, opp_overlap 898422, overlap 898415 GTCCTCACCGAAAAA GATC-GGCG CAG CGCCTGGTC CGGCGCTATCTGCTC Pden_0915 898843 - 898445 - | entericidin EcnAB TERM 637 899156 - 899174 + G 71 -10.2 -3.72576 | GTTGCGGGGATGTCA TCCTGCCG GCC CGGCTGGA TTTGCTGCCCGACAC Pden_0916 898903 - 899223 + | TraR/DksA family transcriptional regulator Pden_0917 899382 - 899233 - | entericidin EcnAB TERM 638 899531 - 899541 + r 82 -6.8 -4.66609 | CAGCCTGTGCCTCGC CTGC GCC GCAG TTTTTCGGTGCGGTG TERM 639 899777 - 899721 - R 74 -11.7 -3.60296 | gap 4, opp_overlap 899758 CACGGTGATTGCAAA CAGC-CTGCG-CAGCCGCA--TCCCCGGC GAT ACCGGAGAGGCGCGGCTGTCGCTGCGCTG TCCTGCGGGCCGGGG Pden_0918 900592 - 899825 - | alpha/beta hydrolase fold Pden_0919 900663 - 901046 + | hypothetical protein Pden_0920 902780 - 901497 - | serine hydroxymethyltransferase ppnK 902924 - 903673 + | inorganic polyphosphate/ATP-NAD kinase TERM 640 904636 - 904624 - g 81 -10.5 -4.25104 | opp_overlap 904624 CGCGCCCGAGGAAAA GCCGG TGA CCGGC TTCGTCTTCAAGGTC Pden_0922 903740 - 905335 + | peptide chain release factor 3 TERM 641 905363 - 905380 + F 73 -9.8 -3.92075 | AAAGATCGGTGGTGC GCCCGG AAGGGG CCGGGC TTTCTCAATGGGCAT Pden_0923 905484 - 905984 + | hypothetical protein Pden_0924 906497 - 906075 - | OsmC family protein Pden_0925 906605 - 907498 + | hypothetical protein Pden_0926 907568 - 907921 + | hypothetical protein TERM 642 907975 - 907942 - T 75 -13.7 -3.01712 | overlap 907921 CCTTCCTGCTCAAGA TGGCCGGTCCGGCCC TGAG GGGTGGGACCGGCCG GGCTAAGGCCCTTGC Pden_0927 909129 - 907993 - | putative deoxyguanosinetriphosphate triphosphohydrolase TERM 643 909078 - 909095 + g 75 -9.1 -4.16842 | gap 1 TGGACATGCGCTCGG GCCAGCGG CGG CCGC-GGC TTTCTTCGGGCTGGC Pden_0928 909205 - 909540 + | iron-sulfur cluster assembly accessory protein Pden_0929 909579 - 910364 + | exodeoxyribonuclease III Xth Pden_0930 910817 - 910464 - | hypothetical protein Pden_0931 912804 - 910948 - | extracellular solute-binding protein TERM 644 912968 - 912988 + H 100 -15.4 -5.52986 | CCTGCCTCATGACTA GCGCCCGC CTTGT GCGGGCGC TTTTTTTACTGGGGT TERM 645 913141 - 913163 + H 74 -2.6 -4.78107 | gap 1 TTGCCAGCCCTCTGC GCCCGG-CC TTGTGC GGTCCCGGC TTTTTGCTCATGCTG Pden_0932 913215 - 913997 + | 3-hydroxybutyrate dehydrogenase Pden_0933 915005 - 914019 - | basic membrane lipoprotein thyX 916053 - 915121 - | FAD-dependent thymidylate synthase TERM 646 915969 - 916003 + g 70 -12 -3.39288 | overlap 915967 CGGCGCGCAGGGTGG GGCGCGGGTCGGCGCG CTG CTCGTCGATCTGGGCC TGTTGTTCGGGGGTG Pden_0935 916203 - 916631 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_0936 917329 - 916811 - | MarR family transcriptional regulator Pden_0937 917666 - 917421 - | hypothetical protein TERM 647 918044 - 918026 - g 76 -7.3 -4.25104 | GTTCGCGCAGGAAAA CGGGCTG GACTA CGGCCCG GCGCAGGTGACGGTC Pden_0938 917772 - 918974 + | aminotransferase, class I and II aspA 920438 - 919032 - | aspartate ammonia-lyase TERM 648 919080 - 919109 + g 75 -4.8 -4.56597 | overlap 919076 919079 TTCGGGGCGCAGGAT GGCGTCCAGCCG TTCCTT CGGCAGCAAGCC TTTTTCCAGCACCAG Pden_0940 921495 - 920599 - | LysR family transcriptional regulator TERM 649 921662 - 921674 + H 83 -9.1 -4.36914 | opp_overlap 921671 AACGCTTGCCCCTTG CCGGA AAA TCCGG TTTTCTGGCCGGCAC Pden_0941 921708 - 922742 + | malate/L-lactate dehydrogenase Pden_0942 923203 - 922739 - | AsnC family transcriptional regulator Pden_0943 923313 - 926732 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 650 926841 - 926855 + F 72 -3.4 -4.64861 | GCCTTTCAGGATCCG GGGTGG CAT CCGACC TTTCTTTTGGCCGAG Pden_0944 926862 - 927233 + | TetR family transcriptional regulator TERM 651 927261 - 927276 + F 71 -11.8 -3.26947 | overlap 927273 GCAGTCTCCGGGATG CCGGGC CGCC GCCCGG TTGCTCTGCCGGTTG Pden_0945 927765 - 928766 + | substrate-binding region of ABC-type glycine betaine transport system Pden_0946 928843 - 929733 + | binding-protein-dependent transport systems inner membrane component Pden_0947 929726 - 930772 + | glycine betaine/L-proline ABC transporter, ATPase subunit TERM 652 931785 - 931827 + G 82 -15.4 -3.53224 | CGGGCTGATGCGGGC GGCGCTGCGCGAGGCGCATC ACT GGGCCGCCTGTCGCAGCGCC TTTCAGCGCCGGCTG TERM 653 932293 - 932320 + G 72 -14.2 -3.13403 | gap 1, overlap 932276 932291 GTGCCCGAGGCCGAG GCGCGCTG-GTTC GCC GAGCGCAGCGCGC TGTTGCTGACCGCCG Pden_0948 930853 - 932481 + | acyl-CoA dehydrogenase domain-containing protein Pden_0949 933501 - 932488 - | DNA/RNA non-specific endonuclease TERM 654 933332 - 933313 - G 70 -12.1 -3.36452 | opp_overlap 933306 933303 ATCCGGCAAGACGAA GCCCGGG TCGTAG CCCGGGC GGTCGCCATAGCTTT Pden_0950 935244 - 933691 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 655 934263 - 934297 + g 90 -14.2 -4.07568 | CCTGGCGGATGGCGC GGGCGATGGCGAATTC GCT GGCTCCGCCGTCGCCC TTTTCAAAGACGCGA TERM 656 934497 - 934507 + g 83 -8.2 -4.58395 | overlap 934475 934450 CGACGCGGACGCCGC GCCC GTC GGGC TTTTTCGCCGGTGCC Pden_0951 937603 - 935339 - | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Pden_0952 938428 - 937769 - | DSBA oxidoreductase Pden_0953 939892 - 938429 - | AMP-dependent synthetase and ligase TERM 657 939580 - 939603 + g 74 -14.6 -3.05343 | gap 1 CGTCGGCGACGATCA TCGCCG-GGCG GAT CGCCGCGGCGA TCTTGCCGATCTCGG TERM 658 939805 - 939754 - G 79 -15 -3.32844 | gap 1, overlap 939755 GGCCGGATTGCAGAA GGCCGGTCGCCGTGCCCAGCACCGC CTG GCGCAGCCGGGCATG-CGACCAGCG GTCGGCACGGCTGAG TERM 659 939804 - 939755 - G 79 -18.5 -2.59564 | gap 1, overlap 939754 GCCGGATTGCAGAAG GCCGGTCGCCGTGCCCAGCACCGC CTG GCGCAGCCGGGCATG-CGACCAGC GGTCGGCACGGCTGA TERM 660 940072 - 940046 - R 70 -7.9 -4.06502 | gap 1, overlap 940047 GAGGTGCAAATGAAA GCGGCCGACACC TGAT GG-GCCGGCCGG TTCCGAAATTCCGGG Pden_0954 940304 - 940098 - | cold-shock DNA-binding domain-containing protein Pden_0955 942478 - 940532 - | threonyl-tRNA synthetase TERM 661 941466 - 941477 + g 75 -5.8 -4.41047 | TTCATCGGCTTGAGC GCGT TGAT ACGC TTTTCCTTGGCGCCT Pden_0956 942649 - 943398 + | hypothetical protein TERM 662 943425 - 943402 - T 84 -15.2 -3.40403 | opp_overlap 943403, overlap 943403 CGGGCGGGATGAGAA GGGCGCGGCC CATC GGCCGCGCCT TGTCCCTGCGGGTGG TERM 663 943403 - 943424 + T 93 -18.7 -3.35996 | opp_overlap 943403 943402 GGGCGGGATGAGAAG GGCGCGGCC CATC GGCCGCGCC TTGTCCCTGCGGGTG TERM 664 943424 - 943403 - T 86 -18.7 -2.64099 | opp_overlap 943403, overlap 943402 GGGCGGGATGAGAAG GGCGCGGCC CATC GGCCGCGCC TTGTCCCTGCGGGTG Pden_0957 944784 - 943441 - | polyhydroxyalkanoate depolymerase, intracellular TERM 665 944935 - 944919 - g 89 -2.2 -5.37345 | GGCAAGGACAAAAAA CCGG AAGTCGAAG CCGG GGCCGGCGATGCGGC Pden_0958 944898 - 947219 + | poly(R)-hydroxyalkanoic acid synthase, class I TERM 666 947271 - 947222 - f 75 -6.5 -4.37886 | gap 1, opp_overlap 947223, overlap 947223 947224 CGAGCGGGCATAAAA TTTTTCTGCACCGCAGCA-AGAAA ACC TTGCAATGCTGCAGTGCAGAAAGT ATATGTTGGACAGAA Pden_0959 947333 - 947806 + | hypothetical protein TERM 667 947853 - 947834 - f 84 -15 -3.31263 | opp_overlap 947834 ACGGTATCGGGACAA GGGGGCAG TTCG CTGCCCCC TTTTCTCATGCCCGC TERM 668 947834 - 947853 + F 100 -15 -4.46212 | opp_overlap 947834 ACGGTATCGGGACAA GGGGGCAG TTCG CTGCCCCC TTTTCTCATGCCCGC Pden_0960 947955 - 948542 + | polyhydroxyalkonate synthesis repressor, PhaR Pden_0961 949788 - 948709 - | phage integrase family protein Pden_0962 950018 - 949785 - | hypothetical protein Pden_0963 950743 - 950015 - | hypothetical protein Pden_0964 951180 - 950740 - | hypothetical protein Pden_0965 951442 - 951170 - | hypothetical protein Pden_0966 952170 - 951442 - | hypothetical protein Pden_0967 952967 - 952167 - | hypothetical protein Pden_0968 953392 - 952964 - | hypothetical protein Pden_0969 956043 - 953392 - | DNA methylase N-4/N-6 domain-containing protein Pden_0970 957165 - 956047 - | DNA polymerase III, beta subunit TERM 669 957240 - 957213 - R 100 -14.1 -5.26316 | overlap 957232 GGATTGCAGAAAAAA GCCCCCGGCCC GAGCAG AAGCCGGGGGC CAGTGAAGCCCGGCG Pden_0971 957514 - 957302 - | hypothetical protein Pden_0972 957774 - 957514 - | hypothetical protein Pden_0973 958079 - 958315 + | hypothetical protein Pden_0974 958832 - 958305 - | hypothetical protein TERM 670 958731 - 958742 + g 72 -5.8 -4.30177 | opp_overlap 958731 CGTGTGCGCGGCAAA GACG ATAA CGTC TTTCTTCATCTCCTG TERM 671 958954 - 958970 + r 88 -13.7 -3.82218 | opp_overlap 958954 TTAGACATGAAAAAA GCCCGCA TTA TGCGGGC TTTGCTGGTGTAAGT TERM 672 958970 - 958954 - R 100 -13.7 -5.24989 | opp_overlap 958954 TTAGACATGAAAAAA GCCCGCA TTA TGCGGGC TTTGCTGGTGTAAGT Pden_0975 959615 - 959004 - | putative phage repressor Pden_0976 959930 - 959622 - | hypothetical protein Pden_0977 959968 - 960303 + | hypothetical protein Pden_0978 960958 - 960623 - | hypothetical protein Pden_0979 961090 - 961365 + | hypothetical protein Pden_0980 961362 - 961556 + | hypothetical protein TERM 673 962346 - 962360 + G 71 -11.4 -3.56092 | opp_overlap 962331 TGATCATGGCCGAGG GGGTCG AGA CGACCC TTTCCGCCCTGATCG Pden_0981 961553 - 962695 + | hypothetical protein Pden_0982 962688 - 962936 + | hypothetical protein Pden_0983 962933 - 964771 + | P4 family phage/plasmid primase TERM 674 964848 - 964832 - f 71 -9.4 -3.78022 | opp_overlap 964831 964821 964819 CCTACAGGGAGGAAA GGGAGG GCCTG CCTCCC CGTGTTTTCCGACGA Pden_0984 965147 - 965905 + | hypothetical protein TERM 675 965985 - 965951 - f 70 -13.6 -2.53894 | gap 1, opp_overlap 965952, overlap 965950 ACTATTATCAGGAAT TGCGCCCGC-AGGGA TCACCG TCCCTCGCGGGCGCT TCTGTTTCGGCATAC TERM 676 965952 - 965984 + F 95 -17.8 -3.82202 | gap 1, opp_overlap 965951 965950 CTATTATCAGGAATT GCGCCCGC-AGGGAT CACC GTCCCTCGCGGGCGC TTCTGTTTCGGCATA Pden_0985 966075 - 966425 + | HNH endonuclease Pden_0986 966475 - 966735 + | hypothetical protein Pden_0987 966910 - 967413 + | resolvase domain-containing protein Pden_0988 967403 - 969124 + | phage terminase Pden_0989 969124 - 970461 + | HK97 family phage portal protein Pden_0990 970448 - 971290 + | peptidase S14, ClpP TERM 677 971602 - 971559 - g 73 -13 -3.4252 | overlap 971561 GCTGACCCAGCAGAA GATCCTGACGGACGCCCAGC AGAA GCTGACCGACCGTCTGGAGC AGCTGGAGACGCGCA TERM 678 971600 - 971561 - g 74 -14.2 -3.28447 | overlap 971559 TGACCCAGCAGAAGA TCCTGACGGACGCCCAGC AGAA GCTGACCGACCGTCTGGA GCAGCTGGAGACGCG TERM 679 972025 - 972002 - g 78 -12.4 -3.72576 | opp_overlap 972002 972001 971993 TCTGGGCGCAGGAAA GCGCGCTGGT GCGC ACCATCGCGC ATTTCGTGCATGTGT TERM 680 972593 - 972619 + G 73 -13 -3.53012 | overlap 972594 GCCCGGCCGCGCTGA TCACCGGCGAGT TCA ACTCGACGGTGG TTTCCAGCGGCGCGC Pden_0991 971302 - 972651 + | HK97 family phage major capsid protein Pden_0992 972709 - 973017 + | hypothetical protein TERM 681 973478 - 973454 - gf 93 -19.3 -3.16564 | GGTCGAGGTCATCAA CGCCAGCGCGG TCT CCGCGCTGACG GCCTATCCGAAAATC Pden_0993 973059 - 973553 + | hypothetical protein Pden_0994 973522 - 974070 + | hypothetical protein Pden_0995 974064 - 974414 + | hypothetical protein Pden_0996 974411 - 974818 + | gene transfer agent TERM 682 975156 - 975136 - g 70 -12.5 -3.34398 | overlap 975134 CCCGGTGCTGAAAGA GCCCGACGC GCG GCGCCGAGC CGGTGCGCTGCGTGA Pden_0997 975002 - 975460 + | HK97 family phage protein TERM 683 975483 - 975502 + F 100 -12.1 -4.72272 | opp_overlap 975482 ACACCTCTCATCAAC GCCCGCC CTGACC GGCGGGC TTTTTCATGGAGACC Pden_0998 975521 - 975982 + | hypothetical protein TERM 684 976356 - 976344 - g 87 -4.7 -5.1101 | overlap 976345 TGATGAGCCAAAAAA GCCCG GGG CGGGA AAGAAGAAGACCGCG TERM 685 976412 - 976359 - g 76 -13.9 -3.53012 | gap 1, overlap 976365 976367 GCCCGGGGCGGGAAA GAAGAAGACCGCGAACC-GCTCCCGC GCG GCAAAATCAGGTTCGCGGACGTCTTC GGAAACGGTCTCGCC TERM 686 976406 - 976365 - g 75 -10.1 -4.08557 | gap 1, overlap 976359 976367 GGCGGGAAAGAAGAA GACCGCGAACC-GCTCCCGC GCG GCAAAATCAGGTTCGCGGAC GTCTTCGGAAACGGT TERM 687 976404 - 976367 - g 71 -11.3 -3.63464 | gap 1, overlap 976365 976359 CGGGAAAGAAGAAGA CCGCGAACC-GCTCCCGC GCG GCAAAATCAGGTTCGCGG ACGTCTTCGGAAACG Pden_0999 975982 - 976437 + | hypothetical protein TERM 688 976796 - 976783 - g 73 -8.1 -4.1196 | opp_overlap 976783 AACCGATCTCGAAAA GCTGG TTGT CCAGC TCTCTGCTGACATCA Pden_1000 976763 - 979738 + | phage tape measure protein TERM 689 980097 - 980137 + G 72 -8.2 -4.04206 | gap 1, opp_overlap 980095 AGCGGGCACAGAACC GCT-GCTGACCTCGGCTGC GGTC GCGGCCGGGGACAATGAGC TTTATGTGGACCTGA Pden_1001 979738 - 980418 + | hypothetical protein Pden_1002 980415 - 980981 + | hypothetical protein TERM 690 981114 - 981158 + G 70 -12.8 -3.28712 | gap 2 GTGATCGGTGCCGCA GCGAGGCCGATGCCGCCGCGCT GAC GGC-CGGCGGCCT-GGTCGCGC TTGTCGAGCCGGAGA Pden_1003 980966 - 981337 + | hypothetical protein Pden_1004 981337 - 983379 + | hypothetical protein TERM 691 983404 - 983423 + F 100 -12.8 -4.8048 | AATCCAGCAGACGGC GGCGGTCC AGAT GGGCCGCC TTTTTCATGTGAGGC Pden_1005 983443 - 983823 + | hypothetical protein Pden_1006 984200 - 983811 - | transposase, IS4 family protein Pden_1007 984568 - 984197 - | IS5 family transposase OrfA Pden_1008 985630 - 984674 - | phosphate acetyltransferase Pden_1009 986659 - 985643 - | hypothetical protein TERM 692 986927 - 986891 - R 100 -21.5 -3.36327 | overlap 986892 GGACGGGACGCAGAA GGCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGCA CCCGATCAGGCGGCG TERM 693 986926 - 986892 - R 100 -25 -2.61582 | overlap 986891 GACGGGACGCAGAAG GCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGC ACCCGATCAGGCGGC Pden_1010 988714 - 986933 - | sulfoacetaldehyde acetyltransferase Pden_1011 990215 - 988911 - | major facilitator transporter Pden_1012 991899 - 990373 - | AMP-dependent synthetase and ligase TERM 694 991070 - 991013 - G 84 -16.9 -3.53343 | gap 1 AAGCGGCCCTCGAAA CCCGACTGCACCTCGGGCGC-CAGCGCC GCC GAGGCCGAGCGGCCGAAGCGCAGCCGTG CCCGGGCCTGGGGCG Pden_1013 993305 - 991896 - | succinate-semialdehyde dehydrogenase (NAD(P)(+)) TERM 695 992653 - 992683 + g 71 -10.2 -3.72576 | opp_overlap 992642, overlap 992654 992654 ATAACCGCGACATTG CCGGCGCCGACGCC GAT GGCGGGGGTGCCGC TTTGATAGGCGCGGC Pden_1014 993512 - 994546 + | periplasmic binding protein/LacI transcriptional regulator Pden_1015 994751 - 994548 - | ISCc1, transposase OrfB Pden_1016 995172 - 994798 - | hypothetical protein TERM 696 996192 - 996176 - g 75 -6.5 -4.39426 | overlap 996177 CAGACCTCGAGAAAA CGCTTCG TCG CGAAGCC CAATTCGGCGAAGAA Pden_1017 995578 - 996606 + | transposase IS116/IS110/IS902 family protein Pden_1018 997017 - 998231 + | creatinase TERM 697 998285 - 998256 - T 70 -14.2 -2.53213 | opp_overlap 998253 GAACCCCGGAACGGA GAGGCGGGCCCA TTTTGG CGGGCCCGCCGC GTCTTGGTCAGGCGG Pden_1019 999084 - 998293 - | creatininase Pden_1020 999184 - 1000077 + | LysR family transcriptional regulator Pden_1021 1000194 - 1001321 + | spermidine/putrescine ABC transporter, periplasmic binding protein, putative TERM 698 1001577 - 1001630 + G 71 -10.7 -3.65351 | gap 1 TTCTGGCAGGCTTAT GGCACG-ACGCTGGCCCTTGCCGCCG CGG CGGCGGCGCTGACCAGCGCACTGGCC TTTCCCTGCGCCTAC Pden_1022 1001379 - 1002224 + | binding-protein-dependent transport systems inner membrane component Pden_1023 1002221 - 1003039 + | binding-protein-dependent transport systems inner membrane component TERM 699 1003733 - 1003743 + G 70 -3.2 -4.40804 | overlap 1003723 ACGCCCCGCACGCGC TTCG TCG CGGA TTTTCTGGGGTCGTC Pden_1024 1003043 - 1004131 + | ABC transporter related TERM 700 1004509 - 1004521 + G 72 -6.2 -4.30576 | overlap 1004502 ACAGTGTTCGGCATC GCGG CGCTT CCGC TTTTCCTAGTGGGGA Pden_1025 1004440 - 1005285 + | extracellular solute-binding protein TERM 701 1005368 - 1005400 + G 78 -17.1 -2.74523 | overlap 1005366 GGGCTGCGCTGAGCC TGTCGATTGCCATCG TTA CGATGGCGGTCGGCA TCGTCTTGGCAATGC Pden_1026 1005295 - 1005960 + | polar amino acid ABC transporter, inner membrane subunit Pden_1027 1005950 - 1006621 + | polar amino acid ABC transporter, inner membrane subunit TERM 702 1007220 - 1007238 + G 71 -2.3 -4.65895 | overlap 1007213 1007211 GCAATTCGCCCGCGA GGTCGCC GATCG GGTGGTC TTTTTCCATGAAGGA TERM 703 1007309 - 1007319 + G 75 -4.6 -4.55295 | overlap 1007301 ACCCCAAGTCCGAAA GGCT GCG GGCC TTTGTTTCTCGCGCG Pden_1028 1006618 - 1007340 + | ABC transporter related Pden_1029 1007353 - 1007610 + | hypothetical protein TERM 704 1007933 - 1007971 + G 91 -11.1 -4.57569 | gap 2, overlap 1007936 TCGTCGTGATCGGCA GTCTGGTGGCGACGCGGTT CGG AACC-CG-CGCCACCATGC TTTTTGGCGCGGTCA TERM 705 1007936 - 1007968 + G 72 -13.6 -3.23708 | gap 2, overlap 1007933 TCGTGATCGGCAGTC TGGTGGCGACGCGGTT CGG AACC-CG-CGCCACCA TGCTTTTTGGCGCGG Pden_1030 1007692 - 1008927 + | major facilitator transporter TERM 706 1008950 - 1008977 + F 81 -12.7 -3.63968 | gap 1, overlap 1008974 CATCCCGGCATTCCC CCGTCCC-GGCC TGCAT GGCCCGGGGCGG TTTCGGCATTTCCGG TERM 707 1009857 - 1009886 + G 70 -12.8 -3.38046 | opp_overlap 1009850, overlap 1009856 1009871 1009874 ATCGAAACCGCCATG GCCCGGCGCGAG ATCGTG CTTGCGGCGGGC TCTTTCAACTCGCCC TERM 708 1010128 - 1010153 + G 76 -7.5 -4.25283 | opp_overlap 1010131, overlap 1010131 GCGGCCAGATCACCC AAAGCCCGCTG GAGG CAGGGGGCTTC TTTTCCTCGCGAGAT TERM 709 1010131 - 1010150 + G 78 -9.2 -4.25256 | opp_overlap 1010131, overlap 1010128 GCCAGATCACCCAAA GCCCGCTG GAGG CAGGGGGC TTCTTTTCCTCGCGA Pden_1031 1009116 - 1010735 + | glucose-methanol-choline oxidoreductase TERM 710 1011840 - 1011830 - g 72 -8.2 -4.09685 | overlap 1011831 CGGCACCTGGGAAAA CGGC CAT GCCG AGGGCGGCGTGCCGG Pden_1032 1010907 - 1011980 + | periplasmic binding protein/LacI transcriptional regulator Pden_1033 1012013 - 1012810 + | ABC transporter related TERM 711 1013558 - 1013585 + G 70 -3.2 -4.39166 | gap 1, overlap 1013541 1013573 CGTGCCGGGCCTGGT CGCCTTCCTGCTG GTG CTGCTGGC-GGCG TTTTCCTATGTCACC Pden_1034 1012803 - 1014017 + | inner-membrane translocator Pden_1035 1014977 - 1014024 - | LysR family transcriptional regulator TERM 712 1014158 - 1014189 + g 82 -14.5 -3.52234 | GCCAAGGCGAGGCGA CGGGCAGGTTGTG CAGGGC CACAAGCTGCCCG TTCTGGATTTCTTCG TERM 713 1014822 - 1014835 + g 71 -9.5 -3.70149 | GATGCTGCGTACGGC GCGGC TGAT GCCGC TTTGCGTGATGTCCA Pden_1036 1015071 - 1016027 + | amidohydrolase 2 Pden_1037 1016024 - 1017241 + | amidohydrolase Pden_1038 1018118 - 1017249 - | hypothetical protein Pden_1039 1018432 - 1018118 - | NIPSNAP family protein Pden_1040 1019198 - 1018437 - | short chain dehydrogenase Pden_1041 1019999 - 1019202 - | aspartate dehydrogenase Pden_1042 1020793 - 1019996 - | alpha/beta hydrolase fold TERM 714 1020089 - 1020069 - G 72 -5.4 -4.41348 | gap 1, overlap 1020070 1020086 GCCCTGGGAAAGAAA TGCC-CGCC CGGA AGCGAGGCA AGCCGCGCGCCCGGT Pden_1043 1021344 - 1020799 - | cupin 2 domain-containing protein TERM 715 1020961 - 1020939 - G 74 -13.4 -3.38812 | overlap 1020937 CCTCTTCGAAGAACA CCTCCAGCCC GTT GGGCTGGATG AACCACAACCAATGC Pden_1044 1023008 - 1021341 - | glucose-methanol-choline oxidoreductase Pden_1045 1024043 - 1023021 - | proline racemase Pden_1046 1025192 - 1024119 - | regulatory protein, LacI Pden_1047 1025338 - 1026639 + | extracellular solute-binding protein TERM 716 1026647 - 1026678 + F 71 -13.7 -2.71712 | gap 1, overlap 1026647 TTCGCTGATCCGTCT GGGCGGGGCGC-GT CCACC ACGGCGCCCCGCCG CTTTACGCGAAGGGA TERM 717 1026647 - 1026679 + F 78 -13.5 -3.53012 | gap 2, overlap 1026647 TTCGCTGATCCGTCT G-GGCGGGGCGC-GT CCACC ACGGCGCCCCGCCGC TTTACGCGAAGGGAC Pden_1048 1026700 - 1027626 + | binding-protein-dependent transport systems inner membrane component Pden_1049 1027639 - 1028481 + | binding-protein-dependent transport systems inner membrane component Pden_1050 1028486 - 1029556 + | ABC transporter related TERM 718 1029822 - 1029785 - g 70 -8.3 -3.91897 | gap 1 CCCGCCACGCAGAAA GCGGCCATCCTGAACGCC TGG GGCGACCTG-ATCGCCGC AGACCTGGAGCGGCT Pden_1051 1029578 - 1031062 + | aldehyde dehydrogenase TERM 719 1032278 - 1032264 - f 71 -4.3 -4.4891 | TCCAGCAGGAGAAAA TCATG AAAGA CATGA ACGAAATCCAAGGCA TERM 720 1032357 - 1032375 + G 75 -5.9 -4.52589 | TGAACCCGTCCGATA CGCGCGA CATCA TCGGGCG TTTTGTCTGCGCGGG TERM 721 1033093 - 1033107 + G 73 -10 -3.86194 | opp_overlap 1033093 CTGATCGTGCGGAAA GGCATC CAC GATGCC TTTGTCGAGAGGCTT Pden_1054 1032328 - 1033653 + | aldehyde dehydrogenase Pden_1055 1034103 - 1033801 - | hypothetical protein Pden_1056 1034464 - 1035075 + | hypothetical protein TERM 722 1035135 - 1035104 - T 71 -9.2 -3.72893 | overlap 1035105 CAGGCGGGCAGGAAA TGGGGCAGGGCGGC GATG GCCGCCCCGCCTGT CGCGGGTCAGGCTTG Pden_1057 1036530 - 1035142 - | deaminase TERM 723 1035345 - 1035391 + g 73 -7.2 -4.10657 | gap 1 CCATGGCGCGGGTCA GGCCGAACTCGTCGCGCACGC CGTAAA GC-TGTGCGCAGAGATTGGCC TTTTCCAGCATGTCG TERM 724 1036796 - 1036835 + G 70 -12.6 -3.34962 | GCCCTGATCGACCGT GCCGCGCGCCCGGTGCTG CCGA CCCCGCAGGGCGAGCGGC TTCTGGGCTATGCCC Pden_1058 1036643 - 1037509 + | LysR family transcriptional regulator Pden_1059 1037570 - 1037839 + | hypothetical protein TERM 725 1037824 - 1037849 + T 77 -12.6 -3.60214 | opp_overlap 1037817 1037816 GCGACAATGGGCAAG CGGGCGGAGT GCGTGA ACTCCGCCTG TTGTGTCCTTCCGCT Pden_1060 1038864 - 1037869 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 726 1038015 - 1038035 + g 83 -14.7 -3.64703 | CCGGCCGCGCCCGCA GGTCGCTGG AGA CCAGCGGCC TTTCCGTCCAGCCGA Pden_1061 1039539 - 1038928 - | hypothetical protein Pden_1062 1040434 - 1039892 - | flavin reductase domain-containing protein Pden_1063 1040964 - 1041296 + | aspartate racemase-like Pden_1064 1042243 - 1041329 - | AraC-like transcriptional regulator TERM 727 1042686 - 1042655 - g 78 -13.6 -3.62046 | CCACCTGGTCAACAA CGCCGGTCATGGCG AATT CGCCCCGATCGGCG AGACGACCGAGGCAC Pden_1065 1042377 - 1043132 + | short-chain dehydrogenase/reductase SDR TERM 728 1043147 - 1043178 + T 93 -17.4 -3.44051 | gap 1 AACCGGCAGGGTCAG GGCAGGTCAG-GCCC TCG GGGTGCTGACCTGCC TTGTCGTCCTGCGCA Pden_1066 1043650 - 1043153 - | hypothetical protein TERM 729 1043360 - 1043348 - G 72 -9.1 -4.00038 | CACCAGCAGCAGAAA GACCG TAA CGGTC AGGAAGATGGTTTCA TERM 730 1043539 - 1043529 - G 72 -8.2 -4.09455 | opp_overlap 1043529 ATGAAGACGAAATAA GCCG CGC CGGC TTTGGACTGGGGCAC Pden_1067 1044216 - 1043791 - | OsmC family protein Pden_1068 1044336 - 1044779 + | MarR family transcriptional regulator Pden_1069 1044898 - 1045320 + | hypothetical protein Pden_1070 1045344 - 1045961 + | regulatory proteins, IclR TERM 731 1046198 - 1046216 + G 83 -12.4 -4.08216 | TCCATGTCCTATGAC GTTGCCGC GGT GCGGCGAC TTTTCCCGGCGGTAG TERM 732 1046694 - 1046714 + G 77 -3.9 -4.73613 | TCGAAAGCGTCGGCC GCCTGTG CCGGGAA CGCGGGC TTTTCTTCGTCGTGG Pden_1071 1046186 - 1047334 + | aminotransferase, class V TERM 733 1047373 - 1047339 - f 82 -15.7 -3.14132 | overlap 1047341 CCGCCGCCTGAGCAA GATGCGCCGGACCTG ACCAG CAGGTCCGGCGCAAT AAGAAACGAACCGAC TERM 734 1047371 - 1047341 - f 100 -22.7 -3.13403 | overlap 1047339 GCCGCCTGAGCAAGA TGCGCCGGACCTG ACCAG CAGGTCCGGCGCA ATAAGAAACGAACCG Pden_1072 1047405 - 1048292 + | extracellular solute-binding protein TERM 735 1048347 - 1048361 + F 82 -6.4 -4.59773 | AAGCAAAGGTCATCG GCATGT TCG ACGTGC TTTTTCAACCTGCGA TERM 736 1048642 - 1048657 + G 78 -6 -4.57073 | opp_overlap 1048633 1048638, overlap 1048644 GATCAAGCAGATGCC GCCGCC CTGG GGCGCC TTTTTCCCGGCGCTG Pden_1073 1048349 - 1049110 + | polar amino acid ABC transporter, inner membrane subunit Pden_1074 1049107 - 1049799 + | polar amino acid ABC transporter, inner membrane subunit TERM 737 1050495 - 1050505 + G 75 -8.2 -4.15044 | opp_overlap 1050492 AAGATCGAGGAAGCG GCGC CCG GCGC TTTCTTCACCAACCC Pden_1075 1049814 - 1050566 + | ABC transporter related Pden_1076 1051222 - 1050707 - | hypothetical protein Pden_1077 1051385 - 1052533 + | ABC transporter related TERM 738 1052818 - 1052795 - g 75 -8.8 -4.11216 | gap 1, overlap 1052799 TGGGCACGCTGAAAA GCCAGGGCCTG CTG CTGGCC-TGGC CCGAAGCGCCGCTCG Pden_1078 1052524 - 1053492 + | extracellular solute-binding protein TERM 739 1053522 - 1053540 + G 86 -13.1 -4.17491 | opp_overlap 1053480 1053479 1053517 ATCCCGAACAGCGCA GGGGCGC CGCGC GCGCCCC TTTTCCGGCTTTCCT Pden_1079 1053498 - 1055225 + | binding-protein-dependent transport systems inner membrane component Pden_1080 1055213 - 1056331 + | beta-lactamase domain-containing protein Pden_1081 1056489 - 1056848 + | dual specificity protein phosphatase Pden_1082 1056891 - 1057169 + | hypothetical protein Pden_1083 1057189 - 1058175 + | beta-lactamase Pden_1084 1058320 - 1058490 + | conjugal transfer protein Pden_1086 1060412 - 1058907 - | glucose-methanol-choline oxidoreductase TERM 740 1059440 - 1059454 + g 70 -3.5 -4.46212 | CGTCGTTGTAGAAAT CGTTG AAGAA CAGCG TTTTCTGATAGACCG TERM 741 1060003 - 1059972 - G 86 -12.2 -4.19735 | overlap 1059973 CGGCGGAAAAGGAAA CGGACCCGACCGGG GAGG CTCGGTCAGGTCCT GCCCGGTCGCGCCGC TERM 742 1060002 - 1059973 - G 77 -15.7 -3.11359 | overlap 1059972 GGCGGAAAAGGAAAC GGACCCGACCGGG GAGG CTCGGTCAGGTCC TGCCCGGTCGCGCCG Pden_1087 1061517 - 1060420 - | ABC transporter related Pden_1088 1062401 - 1061523 - | binding-protein-dependent transport systems inner membrane component Pden_1089 1063287 - 1062391 - | binding-protein-dependent transport systems inner membrane component Pden_1090 1064624 - 1063371 - | extracellular solute-binding protein Pden_1091 1066000 - 1064693 - | histidinol dehydrogenase Pden_1092 1067916 - 1066114 - | thiamine pyrophosphate binding domain-containing protein TERM 743 1066892 - 1066850 - G 71 -11.2 -3.53563 | gap 1 ACATCGGCGTGGAAA TCGGCGTTGCGGTCGC-GC AGTGCA GCAGCGTCGGCATCGCCGA TCGCCTCCAGCAGCT Pden_1093 1068069 - 1068911 + | XRE family transcriptional regulator Pden_1094 1068972 - 1069730 + | hypothetical protein Pden_1095 1069750 - 1071117 + | aspartate ammonia-lyase TERM 744 1071612 - 1071630 + G 73 -9.5 -3.86015 | CGATGCGGTCGAGGT GGCGCGG ATCGG CTGCGCC TTTATCCGCGGCGTC TERM 745 1071970 - 1072009 + G 85 -11.5 -4.36914 | CGCGACGTCCCGACG GCGGC-GGTCGAGGCCTTG CGCG CAGGGTC-CGACCTGCTGC TTTTGTCGGCGGCGA Pden_1096 1071142 - 1072143 + | glycoside hydrolase family 3 protein Pden_1097 1072523 - 1072164 - | hypothetical protein Pden_1098 1074150 - 1072561 - | glucose-methanol-choline oxidoreductase TERM 746 1072860 - 1072898 + g 71 -11.6 -3.58343 | TGATCGCGGATTGCT CCATCACCTCCAGCGCGA ACA TGGCGCCGTCGGTGATGG TTTCCAGATCATGGG Pden_1099 1074342 - 1075223 + | xylose isomerase domain-containing protein TERM 747 1076085 - 1076112 + G 73 -10.5 -3.94003 | GTTTCGGATCTCGGT CGCCGCGGTGG CGCTAT CCATGGCGGCG TTCTTGCTTTCTGGT Pden_1100 1075249 - 1076409 + | major facilitator transporter Pden_1101 1076964 - 1076527 - | RpiR family transcriptional regulator Pden_1102 1077986 - 1077084 - | LysR family transcriptional regulator Pden_1103 1078420 - 1079778 + | major facilitator transporter TERM 748 1079782 - 1079817 + F 95 -14.6 -4.07568 | gap 1, opp_overlap 1079779 GCCGCAAGATGACCC GGCCGGCCCCCTTGGTC CTG GTCCG-GGGGGCCGCCC TTTTCCAAAGCCAAC TERM 749 1080020 - 1080034 + G 81 -3.5 -4.91109 | gap 1 ATGCTGGACCGCTCT GGCGCG AAGT CG-GCC TTTTTCTGGTGCAAG Pden_1104 1079858 - 1080391 + | 4-vinyl reductase, 4VR TERM 750 1080877 - 1080864 - g 71 -9.5 -3.72576 | opp_overlap 1080867 GCGGCTGCTATGAAA GCCGC GACA GCGGC CTGTCGGATTTCGGG TERM 751 1081366 - 1081309 - g 72 -13.5 -3.24747 | gap 2, opp_overlap 1081320, overlap 1081310 TGGCGAGATCATCAA CCCGGCC--GGCTTCCGCGAGATTCGG GATTTT CCGAATATCGCGGATGCCATGGCCGAT GCCGGCTGGACCGAG TERM 752 1081365 - 1081310 - g 77 -17 -2.54634 | gap 2, opp_overlap 1081320, overlap 1081309 GGCGAGATCATCAAC CCGGCC--GGCTTCCGCGAGATTCGG GATTTT CCGAATATCGCGGATGCCATGGCCGA TGCCGGCTGGACCGA Pden_1105 1080449 - 1081447 + | peptidase M19, renal dipeptidase TERM 753 1081559 - 1081527 - f 90 -15.6 -3.71284 | opp_overlap 1081526 1081523, overlap 1081528 1081550 GGCCCACCAACAGAA GGCACCGCCCTTGC TTCGG ACAAGGGCGGTGCG ACCCTATTCCAGTAC TERM 754 1081558 - 1081528 - f 93 -19.1 -2.82449 | opp_overlap 1081526 1081523, overlap 1081527 1081550 GCCCACCAACAGAAG GCACCGCCCTTGC TTCGG ACAAGGGCGGTGC GACCCTATTCCAGTA Pden_1106 1082126 - 1082881 + | GntR domain-containing protein Pden_1107 1082878 - 1083873 + | alcohol dehydrogenase TERM 755 1083876 - 1083931 + T 87 -18.3 -2.70932 | gap 3 CGTGGCCGGATAGCG CC-G--GGGCGGGGACCGGCAGGGCCCG GAT CCGGCCCTTCAGGTCCCCGCCCTTCAGG TCATTGCCCGCGCCA Pden_1108 1085582 - 1083927 - | acyl-CoA synthetase Pden_1109 1085837 - 1085622 - | rhodanese-like TERM 756 1086051 - 1086074 + r 72 -10.9 -3.54424 | opp_overlap 1086037 ACGGCGCAGCGGCAC CGGCTGCGC GGGCAA GCGCCGCCG TTTCACCCAATCGGC Pden_1110 1086537 - 1086247 - | hypothetical protein TERM 757 1086554 - 1086586 + r 77 -16.1 -2.53213 | GTTCCCTCCTGCATG GGGGCGGGGCGCGGC TGT GGCGCGCCCCGCCGG TCGGTTCAACGGTTC Pden_1111 1088076 - 1086592 - | NCS1 nucleoside transporter TERM 758 1087239 - 1087255 + g 73 -7.9 -4.18018 | GCAGGCCGATCAACT GGCCCAG GAA CTGGTCC TTTTGGCTGCGGGCA Pden_1112 1089639 - 1088170 - | dihydropyrimidinase TERM 759 1088396 - 1088436 + g 70 -8.2 -3.87815 | gap 1, opp_overlap 1088388 TCGAAGACGTTGTAT TCCACGACCGAC-TGCTGG CGCT CCGGCGTGATGGTCGCGGA TTTCTCGGGATCCCA Pden_1113 1090886 - 1089636 - | allantoate amidohydrolase TERM 760 1091230 - 1091218 - H 89 -2.7 -5.39721 | GTAGTAGATAAAAAA TATGT TTG ACACA AAGACGGGACCGATA cofG 1091275 - 1092417 + | FO synthase subunit 1 Pden_1115 1092414 - 1093670 + | radical SAM domain-containing protein Pden_1116 1093667 - 1094620 + | LPPG:FO 2-phospho-L-lactate transferase Pden_1117 1094617 - 1095267 + | hypothetical protein Pden_1118 1095264 - 1096037 + | F420-dependent oxidoreductase, putative TERM 761 1096393 - 1096363 - g 100 -16.8 -4.63527 | CGACGATCCGAAAAA GGTGGCCATGCCCC CCG AGGGCTCGGCCACC GAGGCGGCGCAGGCG Pden_1119 1096034 - 1096702 + | NADPH-dependent F420 reductase Pden_1120 1096737 - 1097738 + | luciferase family protein TERM 762 1097747 - 1097771 + F 85 -17.1 -3.08032 | opp_overlap 1097717, overlap 1097744 1097762 TCGCTGAGGCCGGCC CGGCCGCGCGA CCC TCGCGCGGCCA TCATTTTCGCCGGGC Pden_1121 1097832 - 1098497 + | TetR family transcriptional regulator Pden_1122 1099472 - 1098969 - | hypothetical protein Pden_1123 1100151 - 1099543 - | Fis family transcriptional regulator Pden_1124 1101599 - 1100148 - | histidine kinase TERM 763 1100331 - 1100355 + g 79 -14.9 -3.29144 | opp_overlap 1100321 GAACAGGCGGGCGCG CAGGTCGGGCG GCA CGCCCGGCCCG TTGTCGGAAACCTCC TERM 764 1100745 - 1100705 - G 95 -21.2 -3.30124 | CCGTATCGTCCAGAA CCGGC-GCCAGCGCGGCGGC ATC GCCGC-GCGCCAGCAGCCGG CGCCCGGCCTGCGCC Pden_1125 1101981 - 1102979 + | ATPase Pden_1126 1103117 - 1103815 + | hypothetical protein Pden_1127 1103802 - 1104131 + | hypothetical protein Pden_1128 1104128 - 1104976 + | von Willebrand factor, type A Pden_1129 1104973 - 1105920 + | von Willebrand factor, type A TERM 765 1106334 - 1106278 - g 73 -12.2 -3.53012 | overlap 1106332 CGGCCCGCGGCGAAA GCGTGGTGCCGGGCCGGATCGAGG-GGC ACG GCGGCCTCGGCCCGGACCAGCAG-ACGC CGCAAACCTCGGCGG Pden_1130 1105917 - 1106528 + | hypothetical protein Pden_1131 1106522 - 1107718 + | hypothetical protein Pden_1132 1108827 - 1107943 - | PRC-barrel containing protein TERM 766 1108938 - 1108958 + r 72 -9 -4.06904 | gap 1, overlap 1108930 TCGAGGGCGCCTGCG GGCACAGGC TGCG GCC-GTGCC TTTCTCCTTCAGTAA Pden_1133 1109188 - 1108967 - | hypothetical protein TERM 767 1109179 - 1109168 - G 86 -5.8 -4.84017 | opp_overlap 1109168 1109167 AAGGCCGCAGAAAAA CGCA AGGT TGCG ATTGTTCATGGCTCG Pden_1134 1110061 - 1109204 - | short-chain dehydrogenase/reductase SDR Pden_1135 1110744 - 1110058 - | hypothetical protein Pden_1136 1110901 - 1111398 + | hypothetical protein TERM 768 1111410 - 1111442 + T 95 -16.2 -4.09864 | overlap 1111412 CTGACGGCACATGCC TTCGCGGCCCCACC CTGTC GGCGGGGCCGCGTA TTTTCCCAAGTCGCT TERM 769 1111412 - 1111440 + T 93 -18.8 -3.64716 | overlap 1111410 GACGGCACATGCCTT CGCGGCCCCACC CTGTC GGCGGGGCCGCG TATTTTCCCAAGTCG Pden_1137 1112048 - 1111575 - | ECF subfamily RNA polymerase sigma-24 factor TERM 770 1112135 - 1112121 - H 72 -11.4 -3.53012 | TGGTTCCGTTCCAAA TCGCCG GAT CGGCGA AAAACCGACTGGCCT TERM 771 1113150 - 1113174 + G 78 -14.3 -3.53811 | overlap 1113152 GCTGATCGACGCGCT GCTCTCGGCCA CCT TGGCCGAGATC TTTGCCACCCATCCG TERM 772 1113152 - 1113172 + G 79 -15.5 -3.34715 | overlap 1113150 TGATCGACGCGCTGC TCTCGGCCA CCT TGGCCGAGA TCTTTGCCACCCATC TERM 773 1113306 - 1113324 + G 81 -7.4 -4.65747 | overlap 1113308 GATGGCAGAGATCGC GGGGCTTT CCG AAAGCCGC TTTTCTTACGCCTTC Pden_1138 1112662 - 1113549 + | helix-turn-helix domain-containing protein Pden_1139 1113565 - 1115775 + | TonB-dependent siderophore receptor TERM 774 1115791 - 1115845 + G 100 -25.7 -4.07568 | gap 1, overlap 1115782 GAGCCTGCGGGTTCA GCCGAC-GCGCCTTTCTGGCCGCCGC CTGC GCGGTGGCCGGCAGGGCGCTGCCGGC TTTTGCGGCGGACGG Pden_1140 1115769 - 1116647 + | periplasmic binding protein TERM 775 1116976 - 1117014 + G 72 -14.5 -2.82635 | gap 1 GCTGCTGAGGGGGAA CCTGCCGGTCGCCCTGGC GGGT GCCGGGGCGGC-GACGGG TCTGGTCATGGCGCT Pden_1141 1116644 - 1118614 + | iron-hydroxamate transporter permease subunit Pden_1142 1118611 - 1119378 + | ABC transporter related Pden_1143 1119400 - 1121097 + | ABC transporter related Pden_1144 1121577 - 1121215 - | hypothetical protein Pden_1145 1122161 - 1121604 - | PfpI family intracellular peptidase Pden_1146 1123320 - 1122331 - | LysR family transcriptional regulator Pden_1147 1123561 - 1124403 + | extracellular solute-binding protein Pden_1148 1124465 - 1125124 + | polar amino acid ABC transporter, inner membrane subunit Pden_1149 1125128 - 1125850 + | polar amino acid ABC transporter, inner membrane subunit Pden_1150 1125898 - 1126653 + | ABC transporter related TERM 776 1127589 - 1127616 + G 71 -11.2 -3.64822 | overlap 1127591 GGTTCTTCGTGAACC TGGTCGGCGCCG CCGT CCGCGCCGGCTA TTTCGATCAGCGGAT Pden_1151 1126673 - 1127662 + | arginase/agmatinase/formiminoglutamase TERM 777 1128005 - 1127985 - g 81 -9.6 -4.35524 | overlap 1127978 GGGCCAAAGCGAAAA CGCCGCGC AGGCG GTGCGGCG CGAGGTCGGCATGGT Pden_1152 1127743 - 1128501 + | ABC transporter related Pden_1153 1128513 - 1129523 + | asparaginase/glutaminase Pden_1154 1129819 - 1130460 + | hypothetical protein TERM 778 1130651 - 1130670 + G 70 -4.3 -4.46073 | gap 1, overlap 1130661 CGGCAACGCGTTCAG CCAG-GTC GGAGA GACGCTGG TTTCTTGTCTTCGGC Pden_1155 1130501 - 1130773 + | hypothetical protein Pden_1157 1131251 - 1131565 + | periplasmic binding protein Pden_1158 1131562 - 1132419 + | hypothetical protein Pden_1159 1132445 - 1132687 + | hypothetical protein Pden_1160 1133068 - 1132706 - | HPP family protein+B94 TERM 779 1133247 - 1133220 - R 100 -22 -4.07687 | opp_overlap 1133244 ATCCTCCCCGGAAAA GGCCCGCGCGGC AGGG ACCGCGCGGGCC GGCAGGCGTCAGCCG Pden_1161 1134461 - 1133256 - | formate dehydrogenase Pden_1162 1134577 - 1135359 + | arginase/agmatinase/formiminoglutamase Pden_1163 1135786 - 1135367 - | NUDIX hydrolase Pden_1166 1136932 - 1138197 + | major facilitator transporter Pden_1167 1138949 - 1138212 - | molybdenum ABC transporter, periplasmic molybdate-binding protein Pden_1168 1139024 - 1140085 + | periplasmic binding protein Pden_1169 1140148 - 1141122 + | transport system permease protein Pden_1170 1141115 - 1141867 + | ABC transporter related Pden_1171 1144021 - 1141928 - | TonB-dependent receptor TERM 780 1142209 - 1142162 - G 86 -12 -4.13014 | gap 1 GCGAGAGCTGGAAAA CTCGACCGAGGGCGAGATGGTCA GGT TGTCCATCGC-CCGCCAGTCGAG CCGCAGATAGGCGCT Pden_1172 1144375 - 1144584 + | TOBE domain-containing protein TERM 781 1144723 - 1144752 + T 71 -10.7 -3.65046 | gap 1, overlap 1144714 CCTGATGGTCCCGGG CCTTC-CTCCCCGG CAA TCGGGGCGCGAAGG TTGTTGGCCTCCAGC Pden_1173 1145660 - 1144701 - | LysR family transcriptional regulator TERM 782 1146314 - 1146354 + G 74 -14.6 -3.04144 | CACGGCGCGCGACAT CGCCGAGGCGGAGCGGAT GCTGG ATCTGCGCCGCCACCGCG TCTTCAAGCTGAAGA Pden_1174 1145826 - 1147016 + | muconate and chloromuconate cycloisomerases Pden_1175 1147019 - 1147309 + | muconolactone delta-isomerase Pden_1176 1147377 - 1148315 + | catechol 1,2-dioxygenase Pden_1177 1148433 - 1149791 + | Rieske (2Fe-2S) domain-containing protein TERM 783 1150050 - 1150012 - g 77 -14.5 -3.14132 | gap 1, overlap 1150014 GGTGTTCCGCATCAA GACCGAGCGCTCGGGCGC ATCC ACGCCCGAGC-CGCGGAC CAGCCACACCGTGGC TERM 784 1150048 - 1150014 - g 77 -15.7 -3.13403 | gap 1, overlap 1150012 TGTTCCGCATCAAGA CCGAGCGCTCGGGCGC ATCC ACGCCCGAGC-CGCGG ACCAGCCACACCGTG Pden_1178 1149788 - 1150276 + | 2-chlorobenzoate 1,2-dioxygenase Pden_1179 1150318 - 1151346 + | oxidoreductase FAD/NAD(P)-binding subunit TERM 785 1151435 - 1151457 + G 71 -10.4 -3.71284 | overlap 1151422 1151450 CGCCGTCGCCCTGCG CGCGGCCGCC GAG GGCGGCAGGG TTCTGTTCGTGGACC benD 1151343 - 1152128 + | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase Pden_1181 1152170 - 1153501 + | major facilitator transporter TERM 786 1153540 - 1153517 - f 90 -16.7 -3.41013 | opp_overlap 1153515 1153512 GAACGACAGCGACAA GGCGCGCGG TTCCGG CCGCGCGCC GCATCTTGTGAAAGG Pden_1182 1153562 - 1154359 + | 3-oxoadipate enol-lactonase Pden_1183 1155110 - 1154430 - | GntR family transcriptional regulator TERM 787 1155940 - 1155914 - g 73 -10 -3.86897 | GCGACCTGGCAGAAA TGGGGGTGCGGA TCA CCCGCGCCGCCA ACGAACAGCTGGGCT Pden_1184 1155325 - 1156353 + | proline racemase Pden_1185 1156370 - 1157320 + | ornithine cyclodeaminase/mu-crystallin TERM 788 1157445 - 1157413 - T 84 -17.1 -2.78679 | overlap 1157417 TCGGCTTATCGAAAC GAAAGGCCGGCCA AGGATTA TGGCCGGCCTTCC CGCGTTGCGGACCTG TERM 789 1157441 - 1157417 - T 93 -14.3 -4.08485 | overlap 1157413 CTTATCGAAACGAAA GGCCGGCCA AGGATTA TGGCCGGCC TTCCCGCGTTGCGGA Pden_1186 1158650 - 1157466 - | alcohol dehydrogenase Pden_1187 1159791 - 1158682 - | mandelate racemase/muconate lactonizing protein TERM 790 1159028 - 1159061 + g 74 -11 -3.73775 | CAAAGCCCTTGGCCG GCGGCGCGGATC ACCGTGGACA GATCCTCGCCGC TTTCGTCCAGATAGA Pden_1188 1160922 - 1159855 - | ferredoxin TERM 791 1160031 - 1160081 + g 78 -16.6 -3.01712 | overlap 1160076 AGGGGATCGGGATGC CCGCCGCCCGCGCCGTGGCCAGGA TGG TCTCGGTCTCGGCGCAGCGGGCGG TCTTGCCCGAGGCGG Pden_1189 1162277 - 1160925 - | Rieske (2Fe-2S) domain-containing protein Pden_1190 1162292 - 1163167 + | LysR family transcriptional regulator Pden_1191 1164652 - 1163174 - | FAD dependent oxidoreductase TERM 792 1164574 - 1164545 - G 95 -18.6 -3.54741 | gap 1 CAGCAGCGTGCGAAA GCC-GCGCCCGGC CAGTT GCCGGGCGCTGGC GCAACCCACCGCGCC Pden_1192 1165437 - 1164649 - | NADP oxidoreductase, coenzyme F420-dependent Pden_1193 1166477 - 1165434 - | glycine betaine/L-proline ABC transporter, ATPase subunit Pden_1194 1167360 - 1166470 - | binding-protein-dependent transport systems inner membrane component Pden_1195 1168438 - 1167437 - | substrate-binding region of ABC-type glycine betaine transport system TERM 793 1168942 - 1168927 - R 71 -11.8 -3.26947 | overlap 1168915 CAACCGGCAGAGCAA CCGGGC GGCG GCCCGG CATCCCGGAGACTGC Pden_1196 1169614 - 1168970 - | TetR family transcriptional regulator Pden_1197 1169763 - 1171799 + | NADH:flavin oxidoreductase/NADH oxidase Pden_1198 1172922 - 1172410 - | MarR family transcriptional regulator Pden_1199 1173049 - 1174212 + | amidohydrolase TERM 794 1174486 - 1174533 + G 73 -7.6 -4.20696 | overlap 1174488 CGCTGGTCGCCATGG TGGGCGGGCCGGTCACGCTGAT GCGG GTCGGGGTGATCGGGTCGGCTA TTTTCGAGTTCGTCG Pden_1200 1174251 - 1174988 + | hypothetical protein Pden_1201 1175013 - 1175708 + | hypothetical protein TERM 795 1175780 - 1175819 + T 78 -14.2 -3.28791 | gap 1 TGCACCAGTTCCATA TGCGTGGCGGCGGTGCGCG AAT CGTGC-CTGCCGCCCGGCA TTGTCACCCGCCAAT Pden_1202 1176604 - 1176020 - | resolvase domain-containing protein Pden_1203 1176837 - 1177217 + | hypothetical protein Pden_1204 1178277 - 1177372 - | D-alanine--D-alanine ligase Pden_1205 1179286 - 1178651 - | urease accessory protein UreG Pden_1206 1179930 - 1179283 - | urease accessory protein UreF Pden_1207 1180375 - 1179911 - | UreE urease accessory domain-containing protein ureC 1182076 - 1180388 - | urease subunit alpha Pden_1209 1182393 - 1182076 - | urease, beta subunit Pden_1210 1182954 - 1182394 - | HupE/UreJ protein Pden_1211 1183266 - 1182955 - | urease, gamma subunit Pden_1212 1184107 - 1183268 - | urease accessory protein UreD TERM 796 1183358 - 1183318 - G 73 -7.5 -4.12188 | gap 1 GCAGGACGCGCAAAA GACGGATGACCTGCCGGC GCAGGG GCCAGCCG-TCGTCCGCC AGCAGGCGCAGGATC Pden_1213 1184393 - 1184112 - | hypothetical protein TERM 797 1184471 - 1184488 + H 83 -5.5 -4.93547 | opp_overlap 1184471, overlap 1184465 GGTCCACGAGCAAAA CTTAGCC GACC GGCGAAG TTTTTCCTTGCTTGC TERM 798 1184488 - 1184471 - H 70 -5.5 -4.30576 | opp_overlap 1184471 1184465 GGTCCACGAGCAAAA CTTAGCC GACC GGCGAAG TTTTTCCTTGCTTGC TERM 799 1184829 - 1184815 - g 74 -12.8 -3.55444 | opp_overlap 1184821 GGGCCATCTGGGAAA GCCGGC TCG GCCGGC TGGACGATTACGTCA Pden_1214 1184520 - 1184873 + | regulatory protein, ArsR Pden_1215 1184870 - 1185346 + | activator of Hsp90 ATPase 1 family protein TERM 800 1186068 - 1186038 - g 78 -8.3 -4.36914 | gap 1, overlap 1186040 GCTCTGGGGAGAAAA CG-GGCCGAAGCAT GCCG ATGCCTGGGCCGCG TTCGAGGAAGCGGAC Pden_1216 1185343 - 1186215 + | activator of Hsp90 ATPase 1 family protein Pden_1217 1186313 - 1186939 + | hypothetical protein Pden_1218 1186983 - 1187225 + | hypothetical protein Pden_1219 1188015 - 1187344 - | hypothetical protein Pden_1220 1188064 - 1188312 + | hypothetical protein Pden_1221 1188940 - 1188554 - | transposase, IS4 family protein Pden_1222 1189305 - 1188937 - | transposase and inactivated derivative TERM 801 1190056 - 1190043 - g 78 -5.9 -4.66833 | overlap 1190045 GGCCAAGGGCAAAAA CCGCA GCTA CGCGG CACTGACGGACGCCG Pden_1223 1189396 - 1190604 + | phage integrase family protein TERM 802 1190635 - 1190659 + G 100 -11.5 -4.98857 | AGTTCGAGGAAAGGG CCGCTATCATG GAA TATGATGGCGG TTTTTCTCGTTCCAT Pden_1224 1190595 - 1190783 + | hypothetical protein Pden_1225 1190776 - 1191063 + | hypothetical protein TERM 803 1191060 - 1191102 + F 100 -6.9 -5.64328 | gap 1, overlap 1191063 TGCCATCGACTGCAT GTAGGCTTTTCCTCGGCGGC TTCG GTCGCCGGGGATCACCC-AC TTTTCTTTTTTTGTT Pden_1226 1191160 - 1191747 + | hypothetical protein Pden_1227 1191719 - 1192684 + | hypothetical protein Pden_1228 1193203 - 1192946 - | XRE family transcriptional regulator TERM 804 1193747 - 1193737 - g 72 -6.8 -4.2558 | GAGGCTGGATCAAAA CGTC AGG GACG TAAAGCTACGGTAGG Pden_1229 1193452 - 1193832 + | hypothetical protein Pden_1230 1193829 - 1194254 + | hypothetical protein TERM 805 1194242 - 1194263 + F 79 -3.7 -4.93296 | gap 1, overlap 1194243 CCCAGATCAGTCTCC TCCTGCAACC TAA GGTT-CAGGC TTTTTATCGTCCTCA Pden_1231 1194291 - 1194746 + | hypothetical protein TERM 806 1195159 - 1195171 + F 73 -5.5 -4.36914 | overlap 1195151 1195160 GAAAAATCTTGTGGC TTCCC CGC GGGAG TTTTATGCGCCCGGC Pden_1232 1195187 - 1196395 + | hypothetical protein Pden_1233 1197229 - 1196396 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 807 1196564 - 1196534 - G 77 -14.6 -3.14132 | GTGCGTCTCGATGAA GACGCCGGCGACGC CGA GCGCCACCGCCGCC CGCGCCATGACCGGC TERM 808 1196762 - 1196774 + g 72 -9.1 -4.08692 | GATGCGTTCGTTGCC GGTCG AGG CGACC TTTTCGGCGACATTC Pden_1234 1198965 - 1197226 - | capsule polysaccharide export protein-like Pden_1235 1199602 - 1198949 - | ABC transporter related TERM 809 1199692 - 1199662 - H 79 -14.7 -2.93455 | gap 1, overlap 1199659 CGAGATACACAATCA CTGCCGCGGC-CTG AAAC CCGCGCCGCGGCAG GCCGGACAATATGCC Pden_1236 1199757 - 1200419 + | uracil-DNA glycosylase superfamily protein TERM 810 1200811 - 1200835 + G 87 -17.1 -3.28712 | GCGCGGCGGCTGGGC GCGCCGTCGCC CGA GGCGGTGGCGC TTCTGGCCGAGCCCC Pden_1237 1200403 - 1201155 + | hypothetical protein TERM 811 1201217 - 1201188 - T 88 -14.3 -3.85698 | opp_overlap 1201192 1201194, overlap 1201194 CTTGGCCCGGACAAA CGAAAACCCGCCC TTGA GGGCGGGTCTTTG CGTGATCACCGTGAG TERM 812 1201192 - 1201213 + T 74 -11.5 -3.68351 | opp_overlap 1201188 1201194, overlap 1201194 GCCCGGACAAACGAA AACCCGCCC TTGA GGGCGGGTC TTTGCGTGATCACCG TERM 813 1201211 - 1201194 - T 100 -14.1 -4.61873 | opp_overlap 1201192 1201194, overlap 1201188 CCGGACAAACGAAAA CCCGCCC TTGA GGGCGGG TCTTTGCGTGATCAC TERM 814 1201194 - 1201211 + T 80 -14.1 -3.42395 | opp_overlap 1201194 1201188, overlap 1201192 CCGGACAAACGAAAA CCCGCCC TTGA GGGCGGG TCTTTGCGTGATCAC Pden_1238 1201808 - 1201248 - | hypothetical protein Pden_1239 1201891 - 1202133 + | hypothetical protein Pden_1240 1202142 - 1203749 + | peptidoglycan binding domain-containing protein Pden_1241 1203776 - 1204870 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Pden_1242 1204965 - 1205177 + | phosphopantetheine-binding Pden_1243 1205174 - 1206523 + | beta-ketoacyl synthase Pden_1244 1207841 - 1206615 - | major facilitator transporter TERM 815 1207192 - 1207154 - G 75 -16 -2.85999 | overlap 1207157 TCAGCGCATAGGACA CCATGCCGCAGATCATCG CCA CGGCGATCTGCGGCACGC GCAAGAGTTCGCCCA TERM 816 1207189 - 1207157 - G 81 -18.5 -2.68434 | overlap 1207154 GCGCATAGGACACCA TGCCGCAGATCATCG CCA CGGCGATCTGCGGCA CGCGCAAGAGTTCGC TERM 817 1207209 - 1207247 + g 71 -10.9 -3.59262 | gap 1 CAAGAGTTCGCCCAG CGGCCGGCCCTCGGTCTG GCCG CGGAC-GGGGGCGGGCGG TTTCGGAATGTCCAG Pden_1245 1208487 - 1207849 - | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Pden_1246 1209292 - 1208672 - | hypothetical protein Pden_1247 1210518 - 1209295 - | glutathionylspermidine synthase Pden_1248 1210724 - 1212337 + | extracellular solute-binding protein Pden_1249 1212380 - 1213438 + | binding-protein-dependent transport systems inner membrane component Pden_1250 1213435 - 1214340 + | binding-protein-dependent transport systems inner membrane component Pden_1251 1214337 - 1215191 + | ABC transporter related Pden_1252 1215238 - 1215993 + | ABC transporter related Pden_1253 1216697 - 1215990 - | hypothetical protein TERM 818 1216208 - 1216196 - G 75 -10.5 -4.08216 | opp_overlap 1216206 TGATCGCCGCCAAAA GCGGC ACC GCCGC CGCGACGCTGAAGGT TERM 819 1217862 - 1217907 + G 78 -9.5 -4.18018 | gap 1, overlap 1217893 CGAGGCCGCAGCCCC GCTGATCGCGCGCGGGACCATC GCC GA-GGACGCGCCCGCGGCCGGC TTTTACGTCGCGCCG Pden_1254 1216822 - 1218267 + | aldehyde dehydrogenase TERM 820 1218854 - 1218902 + G 70 -13.1 -3.34013 | gap 1 GGGCGAGACCGGGAT GCTGGAGCGGTTCATGGGC-TG CGAGGA CACGCCCGAGAACCGCGCCCGC TTCCTTGCCACCATC Pden_1255 1218294 - 1219037 + | 3-ketoacyl-(acyl-carrier-protein) reductase Pden_1256 1219899 - 1219069 - | ABC-3 protein Pden_1257 1220759 - 1219899 - | ABC-3 protein Pden_1258 1221625 - 1220756 - | ABC transporter related TERM 821 1221163 - 1221179 + g 79 -2.2 -4.82901 | overlap 1221162 CTTGCGCCAGCGCCC GCGC CAGGAAGAC GCGC TTTTTCTGGCCGCCC Pden_1259 1222523 - 1221618 - | periplasmic solute binding protein Pden_1260 1222629 - 1223051 + | ferric uptake regulator family protein Pden_1261 1223048 - 1223422 + | hypothetical protein TERM 822 1223437 - 1223410 - T 84 -17 -2.86164 | GGGCGAAGCACGACA GGTCGGGCGCTA ACCC TCGCGCCCGACC GCATGGGCCTGCAGC Pden_1262 1223793 - 1223419 - | hypothetical protein Pden_1263 1224847 - 1223795 - | hypothetical protein Pden_1264 1225551 - 1224844 - | peptidyl-tRNA hydrolase TERM 823 1225555 - 1225605 + H 76 -6.2 -4.46757 | gap 3, opp_overlap 1225582, overlap 1225555 GATCAGTTTCATGCG TTT-CTCC-GTGGCTCGGGCGCCAG ATTA CCGGCGCC-GAGCGGCAGGGGCAAA TTTTATCGCTCTCTT TERM 824 1226226 - 1226208 - g 73 -7.4 -4.2349 | GCGCGAGACCGAAAA GCTCAAGC GGC GCCTGAAC GAGATCTATGTCAAG Pden_1265 1225747 - 1226376 + | endopeptidase Clp clpX 1226538 - 1227803 + | ATP-dependent protease ATP-binding subunit TERM 825 1227823 - 1227846 + F 75 -12.4 -3.53761 | opp_overlap 1227787 1227837 GCCGCCGCCGCGCCG GCCGCCGG GACAATGG CCGGCGGC TTTGGCCGGCGCTTA Pden_1267 1228027 - 1228401 + | NADH dehydrogenase TERM 826 1228453 - 1228471 + G 75 -10.2 -4.03078 | overlap 1228454 1228468 GGTTGGCGCGGCGGT TCTGGCCG TGG CGGCCGGG TTTCTCGTCTGGTCC Pden_1268 1228406 - 1228873 + | hypothetical protein Pden_1269 1228870 - 1229361 + | hypothetical protein aat 1229963 - 1229325 - | leucyl/phenylalanyl-tRNA--protein transferase Pden_1271 1231351 - 1229999 - | acetyl-CoA carboxylase biotin carboxylase subunit Pden_1272 1231880 - 1231359 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 827 1231823 - 1231844 + g 82 -6.5 -4.72272 | opp_overlap 1231821 GCGCCTGGATGAAGG CGACATCGC CCTC GTGATGACG TTTTTCGTGACCAGC Pden_1273 1232874 - 1231984 - | lipid A biosynthesis acyltransferase TERM 828 1232552 - 1232496 - G 100 -23.2 -3.31144 | gap 3, opp_overlap 1232501, overlap 1232481 GCGCCACGGCCAGAA TGACCGG-CC-GGCCTGCCTGCGC-GG CCTGTT CCAGCGCCGGCAGGCCGGGGCCGGTCA GGGGATCGGTCCGGT Pden_1274 1233826 - 1232900 - | hypothetical protein TERM 829 1233925 - 1233913 - R 79 -6.2 -4.64657 | overlap 1233903 1233915 GGAAACGGTGAAAAA CCGG GCGAG CCGG GCGCCCCTGGGCGCT Pden_1275 1236029 - 1234011 - | transketolase Pden_1276 1236124 - 1238088 + | hypothetical protein TERM 830 1239591 - 1239603 + G 78 -6.2 -4.56597 | GACCATCGCGGCGGT GGCG CTGAA CGCC TTTTTCAACGGCACC Pden_1277 1238179 - 1239669 + | uracil-xanthine permease Pden_1278 1241015 - 1239663 - | hypothetical protein TERM 831 1240539 - 1240482 - G 75 -8.4 -4.18018 | GTCCTGGACCGAAAA GACCGGGCCCGTGCC-GCCGGCGC GGATGCCCAGGG GCGCCAGCAGGC-CGCGCGCGATC AGCCGCACCGTCCAG TERM 832 1240590 - 1240612 + g 71 -10.4 -3.72576 | opp_overlap 1240559 1240571, overlap 1240591 GGCCAGCACCCCCAG CGGCCGGGCG ATG CGGCCGGCCA TTTCCTCGGGGGCGA Pden_1279 1241983 - 1241012 - | phage integrase family protein TERM 833 1241956 - 1241942 - G 70 -9.2 -3.85698 | CTGCGCGTCGAGAAA GGCCGA GAT CCGGCC CCGGTCGTCGAGGCG Pden_1280 1243602 - 1241980 - | hypothetical protein TERM 834 1243574 - 1243518 - G 73 -12.1 -3.53091 | gap 2, overlap 1243519 AGTCGCTGGCCGAAA GCGGCGGCTTGGCGGCGGCCGGCAGGG CAAGC CCCAGCC--CCGCCGCCAGGGCGCAGG CGAGGCGAAGGCCGT TERM 835 1243573 - 1243519 - G 70 -15.6 -2.71712 | gap 2, overlap 1243518 GTCGCTGGCCGAAAG CGGCGGCTTGGCGGCGGCCGGCAGGG CAAGC CCCAGCC--CCGCCGCCAGGGCGCAG GCGAGGCGAAGGCCG Pden_1281 1243846 - 1243589 - | hypothetical protein TERM 836 1244480 - 1244449 - g 77 -14.5 -3.11584 | gap 1, overlap 1244447 1244445 ACAGCATCGAACAGA CG-GCGGACCGCGT GCTGG ACGCGATCCGCGCG CATGATCCGGCGATC Pden_1282 1243974 - 1244510 + | shikimate kinase Pden_1283 1244507 - 1245610 + | 3-dehydroquinate synthase Pden_1284 1246029 - 1245607 - | monovalent cation/proton antiporter, MnhG/PhaG subunit Pden_1285 1246307 - 1246026 - | putative monovalent cation/H+ antiporter subunit F Pden_1286 1246792 - 1246304 - | cation antiporter Pden_1287 1248519 - 1246789 - | putative monovalent cation/H+ antiporter subunit D Pden_1288 1248863 - 1248519 - | putative monovalent cation/H+ antiporter subunit C Pden_1289 1251742 - 1248863 - | putative monovalent cation/H+ antiporter subunit A TERM 837 1249329 - 1249380 + g 73 -12.9 -3.53012 | gap 1, opp_overlap 1249328 GGCACGAAGAGATAG GCTTCTAGCGCCTGC-TCCTCGGC ATCGA GCTGCGGGCGCGGGCGCTCGACGC TTTCGGGCGCGGGGC Pden_1290 1253133 - 1251889 - | Orn/DAP/Arg decarboxylase 2 Pden_1291 1253350 - 1253114 - | hypothetical protein Pden_1292 1254941 - 1253370 - | AMP-dependent synthetase and ligase Pden_1293 1255476 - 1254934 - | serine acetyltransferase CysE, putative Pden_1294 1256623 - 1255559 - | hypothetical protein TERM 838 1256102 - 1256076 - G 71 -11.4 -3.5393 | overlap 1256077 ACCAGCTCGTCGAAA TGCACCTCGCCG ATG CGGCGCGGCGCC ATGCCCAGCAATTCC TERM 839 1256101 - 1256077 - G 70 -14.9 -2.72144 | overlap 1256076 CCAGCTCGTCGAAAT GCACCTCGCCG ATG CGGCGCGGCGC CATGCCCAGCAATTC TERM 840 1256688 - 1256713 + r 71 -10.4 -3.66999 | opp_overlap 1256688 1256689, overlap 1256689 GCGCAAGGGGCAGAA CGGCCGGTTC AGTTCG GAACCGGCCC TTTCAATGCCTCGAT TERM 841 1256689 - 1256712 + r 73 -13.9 -2.79878 | opp_overlap 1256688 1256689, overlap 1256688 CGCAAGGGGCAGAAC GGCCGGTTC AGTTCG GAACCGGCC CTTTCAATGCCTCGA TERM 842 1256712 - 1256689 - R 70 -13.9 -2.59742 | opp_overlap 1256689 1256688, overlap 1256688 CGCAAGGGGCAGAAC GGCCGGTTC AGTTCG GAACCGGCC CTTTCAATGCCTCGA Pden_1295 1257868 - 1256696 - | lipase/acylhydrolase, putative TERM 843 1257916 - 1257880 - R 75 -7 -4.37886 | CCACCCGCCAGAAAA CCCGCCGCCGATCCCG ACTGG CGCCCCCGGCGGCCGG TCAGCCGCGAAACCC Pden_1296 1259086 - 1257917 - | DegT/DnrJ/EryC1/StrS aminotransferase Pden_1297 1260006 - 1259083 - | NAD-dependent epimerase/dehydratase Pden_1298 1261131 - 1260007 - | GDP-mannose 4,6-dehydratase Pden_1299 1262690 - 1261338 - | prolyl-tRNA synthetase Pden_1300 1262820 - 1264124 + | hypothetical protein TERM 844 1264476 - 1264488 + G 72 -6.2 -4.30576 | TGGAACCTTGCCGGT GCGC GGGGG GCGC TTTTGCTCATCACCG Pden_1301 1264128 - 1264817 + | hypothetical protein TERM 845 1265715 - 1265684 - g 70 -15.1 -2.73875 | gap 1, overlap 1265681 TCCGGCTGAAGATCA CCGCCGGCGC-GCC CGACC GGCTGCGCCGGCTG ATCATGGAGGAACTG TERM 846 1266899 - 1266915 + G 72 -5.7 -4.34402 | TGCGTTATCTGCCGG CGGGACG GGA CGACCTG TTTTCCTGTCACAAG TERM 847 1266974 - 1266945 - g 78 -10 -4.18018 | gap 1 GTTCTTCATGGAAAA CCCGTCACTGTCG GGACG CGGCAGTG-CGGG TGCCCGCGACGTTCC Pden_1302 1264849 - 1267014 + | polyphosphate kinase TERM 848 1267292 - 1267262 - g 70 -3.9 -4.48987 | overlap 1267263 TTTCTACAACGAAAA GGTCATGG-CCGGGC TGG GCTCGGGCCTTG-CC ACCACCGGCCGGCTG TERM 849 1267336 - 1267348 + G 78 -10.5 -4.15565 | overlap 1267319 TGCGCCGCGGCATGG CGGCG CTG CGCCG TTTTGCGGTCCTGGC Pden_1303 1267083 - 1268624 + | Ppx/GppA phosphatase Pden_1304 1269884 - 1268835 - | peptidase M19, renal dipeptidase TERM 850 1269906 - 1269924 + H 88 -16 -3.31144 | GTCCTTTCGCATTGC GCGGCGCA ACA TGCGCCGC TTATGCGCGTGCCGC Pden_1305 1270069 - 1270392 + | antibiotic biosynthesis monooxygenase TERM 851 1270584 - 1270603 + G 70 -12.8 -3.28924 | overlap 1270571 GGTGGCCCTGCGCGG GCGCGGCC ATTC GGTCGCGC TTCTGGACACCGATC Pden_1306 1270495 - 1271130 + | cobyrinic acid a,c-diamide synthase Pden_1307 1271230 - 1271517 + | hypothetical protein Pden_1308 1273785 - 1271560 - | excinuclease ABC subunit B Pden_1309 1273934 - 1274245 + | ETC complex I subunit region TERM 852 1274293 - 1274310 + T 86 -14.1 -3.7511 | CTCGATCCTTCCAAG GGCCGGC GATT GCCGGCC TTGTCTTGTCGCGCA TERM 853 1274428 - 1274453 + T 72 -8.9 -4.07568 | opp_overlap 1274431 CGGTGGGATTCGAAC CCACGGTGGGG TCTC CCCCACGCTGG TTTTCAAGACCAGAG Pden_1310 1275879 - 1274539 - | integral membrane sensor signal transduction histidine kinase Pden_1311 1276538 - 1275876 - | two component transcriptional regulator TERM 854 1276490 - 1276467 - G 71 -10.9 -3.65199 | AATGTCGCAGGCAAA GCCGCCGTC GCGCAT GGCGGCGGC AAGCTGGGTGGACAG Pden_1312 1276933 - 1276535 - | hypothetical protein TERM 855 1277716 - 1277686 - g 82 -16.8 -3.30124 | CCGCAGTGGCGAGAA GGGCGCGCCGCC GCCCGCT GGCGCCGCGCCC GAGGCTCCCGCCGCG Pden_1313 1277063 - 1277941 + | hypothetical protein TERM 856 1277947 - 1278005 + F 100 -19.5 -4.19258 | gap 1, opp_overlap 1277932, overlap 1277960 CAACCGCTAAGGCAG GTTGCAGGCGGATCGGGCCGCGCGGGCT TTCC AGCCGGCGCGGCCCGTTTCGGCGG-AGC TTTTCGATCAACTCT TERM 857 1277960 - 1277993 + F 100 -25.3 -3.5394 | overlap 1277947 AGGTTGCAGGCGGAT CGGGCCGCGCGGGCT TTCC AGCCGGCGCGGCCCG TTTCGGCGGAGCTTT TERM 858 1278084 - 1278098 + F 85 -7.8 -4.63218 | opp_overlap 1278080 GCAATGCGAAATCCC CTCGGA ATT TCCGGG TTTTCTTGCCCGAAA mdoG 1278128 - 1279726 + | glucan biosynthesis protein G TERM 859 1280078 - 1280088 + G 75 -4.6 -4.56914 | overlap 1280068 TCGCGCTGACCTTCA CCTG GGT CGGG TTTTCCTTTACCTCG Pden_1315 1279723 - 1281897 + | glucosyltransferase MdoH TERM 860 1282773 - 1282829 + G 78 -6.9 -4.63479 | overlap 1282775 GCGCGGCCTTTCGCC TGGATGGCCGCGACCGCTCCGGGCGAG GCG CTGGCCGAGATCGGGCGCGGCGGGCTG TTTTCCTTTATCGTC TERM 861 1282775 - 1282827 + G 73 -9.5 -3.91676 | overlap 1282773 GCGGCCTTTCGCCTG GATGGCCGCGACCGCTCCGGGCGAG GCG CTGGCCGAGATCGGGCGCGGCGGGC TGTTTTCCTTTATCG Pden_1316 1281894 - 1283027 + | hypothetical protein Pden_1317 1283098 - 1284765 + | formate--tetrahydrofolate ligase TERM 862 1284793 - 1284824 + G 74 -14.4 -3.37344 | gap 1 GGCTTTCCCTTTGCG CCGCCCGGCATGACC GTC GGGC-TGCTGGGCGG TTCCTTCGATCCCGC nadD 1284769 - 1285371 + | nicotinic acid mononucleotide adenylyltransferase Pden_1319 1285371 - 1286825 + | peptidase S13, D-Ala-D-Ala carboxypeptidase C Pden_1320 1287258 - 1286836 - | hypothetical protein lysK 1287350 - 1288942 + | lysyl-tRNA synthetase Pden_1322 1289083 - 1291377 + | hypothetical protein TERM 863 1291403 - 1291428 + T 93 -18.3 -3.59262 | CCGGCTTTCCTGCGG CCCTCGGCGGA TCAC TCCGCCGGGGG TTTCAGCATGTCCGA Pden_1323 1291899 - 1291414 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Pden_1324 1292970 - 1291957 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_1325 1294022 - 1292967 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_1326 1294947 - 1294024 - | binding-protein-dependent transport systems inner membrane component Pden_1327 1295868 - 1294951 - | binding-protein-dependent transport systems inner membrane component Pden_1328 1297539 - 1295935 - | extracellular solute-binding protein Pden_1329 1297935 - 1298813 + | thioredoxin reductase-like Pden_1330 1298865 - 1299239 + | cysteinyl-tRNA synthetase-like TERM 864 1299417 - 1299446 + G 70 -15.7 -2.78816 | TCCGCGAGGGGCGGG AGCGGCCGGTGGT CACG ACCACCGGCTGCA TCTGCTGCACCGTCG Pden_1331 1299236 - 1300336 + | cobalamin synthesis protein, P47K Pden_1332 1300377 - 1300775 + | helix-turn-helix domain-containing protein Pden_1333 1302015 - 1300801 - | cobalamin synthesis protein, P47K Pden_1334 1302259 - 1302041 - | hypothetical protein Pden_1335 1302927 - 1302268 - | riboflavin biosynthesis protein RibD Pden_1336 1303402 - 1302938 - | phosphoribosyl-AMP cyclohydrolase Pden_1337 1303873 - 1303421 - | hypothetical protein Pden_1338 1304019 - 1305242 + | cobalamin synthesis protein, P47K TERM 865 1305297 - 1305262 - f 84 -11.8 -4.03234 | gap 1, overlap 1305269 GGCGGCTGACAGAAA GGACGAAGGGCAGGGGC AGG GCTGCTGCCC-CCGTCC ACAAGAGGAACCATA TERM 866 1305297 - 1305269 - f 80 -13.8 -3.36538 | overlap 1305262 GACAGAAAGGACGAA GGGCAGGGGCAG GGCTG CTGCCCCCGTCC ACAAGAGGAACCATA Pden_1339 1305333 - 1306001 + | hypothetical protein Pden_1340 1306001 - 1306318 + | hypothetical protein Pden_1341 1306419 - 1307921 + | extracellular solute-binding protein TERM 867 1308524 - 1308541 + G 82 -9.1 -4.4715 | overlap 1308520 CGCGACGCGATGGCG GGGGTTG CCGC CAGCCCC TTTTATGCATTCGGG Pden_1342 1307918 - 1308856 + | binding-protein-dependent transport systems inner membrane component Pden_1343 1308853 - 1309677 + | binding-protein-dependent transport systems inner membrane component TERM 868 1309819 - 1309804 - g 75 -10.4 -4.09685 | CCGGATCGGGCAAAA GCCTGC TCGC GCAGGC GATCATCGGCACCTT TERM 869 1310079 - 1310111 + G 70 -14.7 -2.71924 | overlap 1310078 CTTGCGGCGCTGGGA CTGGAGGGGGCGGGG GAT CGCCGCCCCGACCAG CTTTCGGGCGGCATG TERM 870 1310455 - 1310428 - g 78 -13.4 -3.57144 | gap 1, opp_overlap 1310447, overlap 1310398 CCGCCGATCCGGAAA GCTGGCCCGAGGG CTG CCCCCGGACC-GC GCAGGGCGAGCCGGT Pden_1344 1309674 - 1311110 + | ABC transporter related TERM 871 1311128 - 1311159 + T 72 -8.6 -3.95071 | gap 1 AAGCGCCATGGGGCA GGGGGGCGTAACGGT TCC GCCGCT-CGCGCCCC TTCTTTGCGGCTTTC TERM 872 1311992 - 1311960 - T 84 -13.4 -3.72576 | gap 1, overlap 1311945 CCGGTGGCGAGTAAA CCGGCGGAGCG-ATG GGCG CTTGCGCCCCGCCGG TCGTCGGGCGGGACC Pden_1346 1312937 - 1312023 - | methylisocitrate lyase TERM 873 1312513 - 1312526 + g 70 -3.7 -4.3953 | overlap 1312494 TTGGCCGCCATGTCG CCGGC CGAG GCCAG TTTCTTGTCGTTCAG Pden_1347 1314103 - 1312934 - | methylcitrate synthase TERM 874 1313252 - 1313264 + g 73 -10.5 -3.86822 | opp_overlap 1313248 GTCCTCGGAAAGCCG GCGCG CGA CGCGC TTTATCACCACGTTG Pden_1348 1315637 - 1314114 - | 2-methylcitrate dehydratase TERM 875 1314182 - 1314217 + g 71 -11 -3.53811 | gap 1 AGACGGTGAAGTTCA GCTCGCCCAGCC-GCCC GGC GGGCAGGTCGGGCAGGC TTTGCACCGCGTCCA Pden_1349 1316025 - 1315624 - | thioesterase superfamily protein Pden_1350 1316144 - 1317529 + | hypothetical protein Pden_1351 1318200 - 1317508 - | LysR, substrate-binding TERM 876 1320636 - 1320626 - g 75 -8.2 -4.22652 | TCACAGGACCGAAAA CGGG CAT CCCG CATTGGGCGTTGAAT Pden_1354 1320063 - 1321046 + | hypothetical protein TERM 877 1321477 - 1321459 - g 74 -11.7 -3.80114 | opp_overlap 1321455, overlap 1321450 GAGCAACCCATTAAA TGGGCCC TGCCG GGGCCCA TGACTATGATCGATA Pden_1355 1321075 - 1322112 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Pden_1357 1323796 - 1323389 - | hypothetical protein TERM 878 1323593 - 1323577 - G 70 -9.3 -3.90112 | opp_overlap 1323577 1323579 CTTCCTTGAACGAAA GTGGGCG AAA CGCCCTC TTTGCAAGCCTGCGC Pden_1358 1324810 - 1323995 - | methyltransferase type 11 Pden_1359 1325252 - 1324827 - | pseudoazurin Pden_1360 1326034 - 1325264 - | ABC transporter related Pden_1361 1327104 - 1326031 - | transport system permease protein TERM 879 1327046 - 1327100 + g 75 -16.8 -2.92613 | opp_overlap 1326999 1327000, overlap 1327045 AGCCAGCCCCAGCCG CGCCCCATGCCGCGGCCCCCGGCGCG GGC CATGCCGGGGGCCGCGGCGCGCATCC TCATTTCAGATCGAA Pden_1362 1328108 - 1327101 - | periplasmic binding protein Pden_1363 1330172 - 1328565 - | isocitrate lyase Pden_1364 1331918 - 1330296 - | malate synthase Pden_1365 1332053 - 1333486 + | hypothetical protein Pden_1366 1334499 - 1333483 - | hypothetical protein TERM 880 1334135 - 1334105 - G 70 -8.2 -3.91897 | GTGCGGATGCAGAAA TCGACCTGCTGCTG GTC CAGCCCCATGTCGA ACAGGATGGCGCCAC Pden_1367 1335343 - 1334483 - | periplasmic binding protein Pden_1368 1337220 - 1335337 - | TonB-dependent receptor TERM 881 1337321 - 1337333 + r 71 -9.1 -3.72576 | GTGACTGTCACCACT GCGGA TCG TCCGC TTTCCTGGCGCACCC Pden_1369 1337956 - 1337561 - | hypothetical protein TERM 882 1337856 - 1337840 - G 79 -2.1 -4.84017 | overlap 1337842 AACGGGCGATAAAAA TGGCGGC GCA GCCTCAA GATACCCGGTGCAGC Pden_1370 1338220 - 1338939 + | hypothetical protein TERM 883 1339192 - 1339172 - g 72 -3.9 -4.57353 | overlap 1339167 GCGGACGACAGAAAA GACTCGG CCATTTT CCGTGTC GAACTGGAAGAGCGG Pden_1371 1338995 - 1339444 + | hypothetical protein Pden_1372 1340204 - 1339398 - | phosphoesterase or phosphohydrolase-like Pden_1373 1341507 - 1340206 - | ATP-dependent Lon protease TERM 884 1340713 - 1340735 + g 77 -14.8 -3.14878 | overlap 1340711 ATGGCATGAAGGGGG CGGCTGCGGC GAT GCCGCAGGCG TGTTGGATTCAGGGA TERM 885 1340925 - 1340911 - G 70 -12.8 -3.28791 | opp_overlap 1340897 ACTCGCCTCGGACAA GGCGCG TTT CGCGCC CTCGCGGCGCACGAA Pden_1374 1342742 - 1341954 - | metallophosphoesterase Pden_1375 1343188 - 1342739 - | hypothetical protein TERM 886 1343607 - 1343635 + r 91 -10.9 -4.56597 | overlap 1343608 CGCCACTCGGGCCTT TCTGCGCTCCGCC TAA GGCGCAACGCAGG TTTTTGCAAGCCCCG TERM 887 1343608 - 1343634 + r 73 -12.2 -3.33744 | overlap 1343607 GCCACTCGGGCCTTT CTGCGCTCCGCC TAA GGCGCAACGCAG GTTTTTGCAAGCCCC Pden_1376 1344600 - 1343653 - | lipoyl synthase Pden_1377 1344725 - 1345291 + | redoxin domain-containing protein TERM 888 1345337 - 1345319 - T 84 -13.1 -3.71649 | opp_overlap 1345319 GCCGGAAACGCGAAA GGGCGCC GCCGG GGCGCCC TTTTTCATGGCCCTG TERM 889 1345319 - 1345337 + T 100 -13.1 -4.72986 | opp_overlap 1345319 GCCGGAAACGCGAAA GGGCGCC GCCGG GGCGCCC TTTTTCATGGCCCTG Pden_1378 1346516 - 1345362 - | hypothetical protein TERM 890 1346209 - 1346226 + g 72 -8.3 -4.07568 | CGCCCCGGCGAGGCC GGGCCGG CACC CCTGCCC TTTTCCGCCGCCCGC Pden_1379 1346729 - 1347061 + | hypothetical protein Pden_1380 1348622 - 1347048 - | protein of unknown function DUF853, NPT hydrolase putative TERM 891 1348753 - 1348774 + H 100 -17.3 -5.08824 | TCCTCCCTGTTGGAC TGCCGCGCC TTCG GGCGCGGCA TTTTTTCGCTCACGG TERM 892 1348928 - 1348960 + H 91 -17.8 -3.27525 | gap 1, opp_overlap 1348925, overlap 1348925 GGAAGGTAGACATGG GGATCCGGGGCAGCG TTCT TGC-GCCCCGGATCC TTGCATTTCCGGCCG Pden_1381 1349084 - 1349872 + | invasion associated locus B family protein TERM 893 1349904 - 1349886 - T 100 -17.4 -4.82154 | AAGCCAGATGAAAAA GGGGCGCC CAA GGCGCCCC GAGAGGATCGGGCCG TERM 894 1349914 - 1349934 + T 100 -15.4 -4.7373 | opp_overlap 1349912 CGCCCCGAGAGGATC GGGCCGGG TCATC CCCGGCCC TTTTTCATGCGCTCA TERM 895 1349987 - 1349971 - T 78 -10.8 -3.95073 | CGGCAGAGCGACAAA GCGCGG CTCGC CCGCGC GGCGCACCATGACCA Pden_1382 1351491 - 1349947 - | protease Do TERM 896 1351681 - 1351656 - R 100 -14.7 -5.31275 | opp_overlap 1351654 1351653 CCGGAGCATAAAAAA GTTCCGCGGCC CAAG GGACGCGGAAC AGGTTTCATCGCAGC Pden_1383 1351956 - 1351705 - | hypothetical protein TERM 897 1352008 - 1351982 - R 86 -15.1 -3.53012 | TGTTCGTTTCGGAAA GGTCCGGCCGC GCGCT GCGCCCGGACC CGGCCCGGACCTGGA Pden_1384 1355647 - 1352030 - | ribonucleotide-diphosphate reductase subunit alpha Pden_1385 1356627 - 1356043 - | 5-formyltetrahydrofolate cyclo-ligase Pden_1386 1358069 - 1356612 - | magnesium transporter TERM 898 1357584 - 1357604 + g 72 -13.3 -3.14132 | CCAGGTCAGCGAGCG TTCGACCGC GGC GCGGTCGGA TTCGTCCAGCGCGGC Pden_1387 1358905 - 1358090 - | inositol monophosphatase TERM 899 1358742 - 1358770 + g 81 -9.5 -4.30719 | opp_overlap 1358759, overlap 1358731 1358755 CTGGCCCGATCGGCT TCGGTCACCGGAT CGA ACCCGGTGGCGGA TTTGTTGTCGGGCCG Pden_1388 1359345 - 1358986 - | XRE family transcriptional regulator TERM 900 1360184 - 1360216 + G 72 -14 -3.23216 | overlap 1360206 GACGCGCCCGGCGAG GCGGCCTTCGGCGC CCTGC GCCCCGGCGGCCGC TTCCTGGTCATCGGC Pden_1389 1359524 - 1360492 + | alcohol dehydrogenase Pden_1390 1360615 - 1361385 + | hypothetical protein TERM 901 1361411 - 1361432 + F 93 -18.7 -3.75153 | opp_overlap 1361406 1361403 GCAAAATGGATCATG GGGCCGGGC ATTC GCCCGGCCC TTTGCGTTCCGGCCG Pden_1391 1361653 - 1361895 + | BolA family protein Pden_1392 1361947 - 1362309 + | glutaredoxin-like protein TERM 902 1362339 - 1362369 + T 100 -22 -3.85698 | opp_overlap 1362343, overlap 1362340 CCCGCATCCTGGACA TGAATGACCCCGCC AAT GGCGGGGTCATTCG TTTGTCGGCGCGGCG TERM 903 1362340 - 1362368 + T 100 -23.3 -2.91276 | opp_overlap 1362343, overlap 1362339 CCGCATCCTGGACAT GAATGACCCCGCC AAT GGCGGGGTCATTC GTTTGTCGGCGCGGC TERM 904 1362365 - 1362343 - T 100 -19.2 -3.2614 | opp_overlap 1362340 1362339 CATCCTGGACATGAA TGACCCCGCC AAT GGCGGGGTCA TTCGTTTGTCGGCGC Pden_1393 1363092 - 1362397 - | hypothetical protein Pden_1394 1363528 - 1363100 - | protein of unknown function DUF883, ElaB TERM 905 1363288 - 1363258 - G 77 -11.1 -3.85698 | opp_overlap 1363257 1363255 CGCCCTGGCGATAAA GCCG-GCGGGCCTCG TCG CG-GGCGCGCTCGGC ATATTCATGGCCGCG Pden_1395 1364754 - 1363627 - | aminotransferase, class V TERM 906 1364527 - 1364509 - G 71 -2.3 -4.64766 | GCGATAGCTGAAAAA GCCGTTC CTGAC GATCAGC GCATGGGCGTCGCGG TERM 907 1365366 - 1365390 + G 72 -4.1 -4.65895 | opp_overlap 1365365 1365364, overlap 1365367 CCTTTTGCGAAAACG CCGCGCTCATC TAT GACGACCGCGC TTTTTCCGTGCAGGC TERM 908 1365440 - 1365478 + G 77 -15.2 -3.14132 | opp_overlap 1365437 AGCTTCATCGAAGGG CTGATCGAGCATCGTGCC CGC GGCACGGTGCCCGAGCCG TTGCTGGACAGCGCC Pden_1396 1364894 - 1365610 + | glutamine amidotransferase class-I Pden_1397 1365607 - 1366965 + | glutamate--ammonia ligase Pden_1398 1367038 - 1368348 + | FAD dependent oxidoreductase Pden_1399 1369001 - 1368345 - | hypothetical protein TERM 909 1368389 - 1368423 + g 75 -9.3 -4.11216 | gap 2, overlap 1368395 GTTCGCGCTCGCGCC GCAGCTTGGCGCGGGCG ATG CGCTCG-GCC-ATCTGC TTTTCGCGGTGGCGG Pden_1400 1371131 - 1369014 - | (p)ppGpp synthetase I, SpoT/RelA TERM 910 1370102 - 1370082 - G 74 -12.5 -3.61178 | CGGATCGACGGCAAA GGGGTTCGC CGT GCGCACCCC GTCACGATAGGCCCA Pden_1401 1371510 - 1371154 - | DNA-directed RNA polymerase subunit omega Pden_1402 1372072 - 1371581 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 911 1371660 - 1371612 - G 74 -12.4 -3.54459 | CGAATCCCCGCCAAA GCCTCGGGCGGCAGGGCGGC-CAG CAT CTGCGCCACGCTGCGTCCC-AGGC GCGGATGCATCCAGT Pden_1403 1372187 - 1372738 + | hypothetical protein TERM 912 1372769 - 1372734 - T 80 -12.6 -3.72576 | gap 1 CCGCCCCGCAGGAAA GCTGAA-CCGGCCCG CAAGTCC CGGGCCGGCTTCGGC CGGCGTGGCGGCTAG Pden_1404 1374172 - 1372781 - | hypothetical protein TERM 913 1373033 - 1373060 + g 70 -12 -3.37487 | overlap 1373032 GCGGATCATCCAGTC GATCTCGGGCGG GATG TCGCCGGAGATC TGTTTCAGCATGTCC TERM 914 1373716 - 1373748 + g 70 -14.8 -2.81173 | gap 1, overlap 1373705 1373717 CGCGCAGTGCCTCGG CCGCGGCGGCATCGG CCAG CCGG-GCCGCCTCGG TCTCGTCCAGTTGCT Pden_1405 1375871 - 1374162 - | hypothetical protein TERM 915 1374247 - 1374259 + g 71 -10.5 -3.72576 | GCGACCAGCCCGTCG CGGCC GCT GGCCG TTTCCTCGACCAGCC Pden_1406 1376451 - 1375897 - | ChaC family protein Pden_1407 1376502 - 1377551 + | hypothetical protein Pden_1408 1378483 - 1377548 - | cyclohexadienyl dehydrogenase Pden_1409 1379586 - 1378483 - | histidinol-phosphate aminotransferase Pden_1410 1380302 - 1379784 - | periplasmic protein thiol--disulphide oxidoreductase DsbE Pden_1411 1381181 - 1380456 - | heme exporter protein CcmC Pden_1412 1381890 - 1381234 - | heme exporter protein CcmB TERM 916 1381849 - 1381819 - G 79 -5.3 -4.78107 | gap 1, overlap 1381820 GACGATCAGGAAAAA CGCCAGCGCAAGGC CGAA GCCCC-CGCCCGCG CGCGTGGCCAGCCGC Pden_1413 1382533 - 1381901 - | cytochrome c biogenesis protein CcmA Pden_1414 1382886 - 1382530 - | hypothetical protein TERM 917 1382859 - 1382824 - G 100 -18.3 -3.9392 | gap 1, opp_overlap 1382821 GCCGACGCGAAAGAA GCCGGGGCCGTAGCCG TCCAC CGGC-ACGGCCCCCGC AAATTCCGTCGGCAG secF 1383878 - 1382886 - | preprotein translocase subunit SecF secD 1385555 - 1383891 - | preprotein translocase subunit SecD Pden_1417 1385904 - 1385572 - | preprotein translocase, YajC subunit mazG 1386096 - 1386947 + | nucleoside triphosphate pyrophosphohydrolase Pden_1419 1386952 - 1387857 + | hypothetical protein Pden_1420 1388830 - 1387841 - | tRNA-dihydrouridine synthase A Pden_1421 1388943 - 1389998 + | phage integrase family protein Pden_1422 1390542 - 1390072 - | BadM/Rrf2 family transcriptional regulator TERM 918 1391279 - 1391245 - g 76 -7 -4.37886 | gap 1 TCACGGTCGAGAAAA CGCCTGTCGCGGCGC TGATCG GCACCGCCCC-GGCG CTTGACGGGGTGCGG Pden_1423 1390665 - 1391582 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_1424 1391595 - 1392215 + | methyltransferase type 11 Pden_1425 1395784 - 1392368 - | ABC transporter related TERM 919 1393583 - 1393561 - G 71 -2.7 -4.58946 | gap 1, overlap 1393564 1393576 CCAGAAAGAAAAGAA CAATCGCGCT GAGA AGCG-GACCG ACCATGGCCCGCATC TERM 920 1395747 - 1395733 - G 70 -3.5 -4.4727 | CGAAGATCGACAAAA TGGCG GAAAG CACCA GAACGGAACGATAGC Pden_1426 1396800 - 1395781 - | major facilitator transporter TERM 921 1395881 - 1395862 - G 100 -13.6 -4.49311 | AGCAGCAGCATAAAA GATCGGGG AATA CCCCGATC GAGCCGCAACCTGAC Pden_1427 1399102 - 1396961 - | TonB-dependent receptor Pden_1428 1400186 - 1399197 - | helix-turn-helix domain-containing protein Pden_1429 1400353 - 1400946 + | lysine exporter protein LysE/YggA Pden_1430 1400925 - 1401488 + | hypothetical protein Pden_1431 1401527 - 1402195 + | GntR family transcriptional regulator Pden_1432 1402280 - 1402837 + | BioY protein Pden_1433 1402834 - 1403808 + | biotin synthase Pden_1434 1405253 - 1403811 - | GntR family transcriptional regulator TERM 922 1405193 - 1405175 - G 76 -7.3 -4.2679 | overlap 1405176 CAATGGCGAGGAAAA GCGGGCC GTCGT GGCCCGG CTCCATCTCGAGGGC Pden_1435 1405317 - 1406012 + | glutamine amidotransferase class-I Pden_1436 1406009 - 1406689 + | MOSC domain-containing protein Pden_1437 1406686 - 1407534 + | pyridoxal kinase Pden_1438 1409686 - 1407734 - | pathogenesis-related protein Pden_1439 1411917 - 1409683 - | hypothetical protein TERM 923 1411306 - 1411288 - G 71 -10.2 -3.75169 | overlap 1411302 GATGAGTCCAGCAAA GGGGTTCG AAC CGATCCCC TCCGACAAGGCCGGC TERM 924 1411355 - 1411302 - G 73 -15.9 -2.52543 | gap 1, opp_overlap 1411314, overlap 1411288 1411315 AGGGGTTCGAACCGA TCCCCTCCGACAAGGCCGGCAGGGCC TGC GGCTCAACCGGCCCTGTC-GTGGTGA AGCTCATGGGATCCA TERM 925 1411343 - 1411315 - G 74 -13.7 -3.28924 | opp_overlap 1411314, overlap 1411302 GATCCCCTCCGACAA GGCCGGCAGGGCC TGC GGCTCAACCGGCC CTGTCGTGGTGAAGC Pden_1440 1412139 - 1412408 + | hypothetical protein Pden_1441 1412411 - 1412872 + | hypothetical protein Pden_1442 1413117 - 1412869 - | hypothetical protein Pden_1443 1413275 - 1413652 + | hypothetical protein Pden_1444 1413649 - 1414047 + | cupin 2 domain-containing protein TERM 926 1414102 - 1414064 - f 78 -7.5 -4.36914 | overlap 1414065 CCGCCCCTGACAAAA TCTCC-CGCTCGGTTGAGA CCT TCTCAATCG-GCGTGGAGG CGGCTCCCGGCTAGC Pden_1445 1414120 - 1414404 + | hypothetical protein Pden_1446 1414397 - 1415647 + | major facilitator transporter Pden_1447 1415738 - 1416283 + | PEBP family protein Pden_1448 1416302 - 1417177 + | PhzF family phenazine biosynthesis protein Pden_1449 1417720 - 1417178 - | hypothetical protein Pden_1450 1418190 - 1417876 - | alpha/beta hydrolase TERM 927 1418613 - 1418588 - R 72 -8.3 -4.07687 | ACCGCTCGCCGAAAA TGCGGCCAAAC TTTG ATTTGGCCCCA CCCCCAGGCAGAGCC Pden_1452 1418975 - 1418685 - | hypothetical protein Pden_1453 1419245 - 1420051 + | DNA polymerase, beta-like TERM 928 1420717 - 1420690 - g 74 -13.6 -3.2794 | gap 1, opp_overlap 1420687 TGGGATGCATATGAA GGACGGATTCTGT CCA AC-GAATCCGTCC AAATCCTTCGCGGCC Pden_1454 1420288 - 1421376 + | glutathione S-transferase-like protein Pden_1455 1422829 - 1421594 - | major facilitator transporter TERM 929 1421928 - 1421892 - G 81 -7.2 -4.62441 | gap 2, overlap 1421877 1421872 GCGGATAGAAACAAA GCGTTGCTC--CCGCCCG ACG CGAGCGGCAGAGCTGCGC CGAGGGCGGTAAACC Pden_1456 1422907 - 1423398 + | HxlR family transcriptional regulator Pden_1457 1424317 - 1423406 - | alpha/beta hydrolase Pden_1458 1424485 - 1425009 + | cupin 2 domain-containing protein TERM 930 1425332 - 1425301 - g 71 -11.6 -3.65902 | gap 1, opp_overlap 1425316 1425318 1425319 1425325 TCTACTGGATCGAAA CGCAGAACCCCGACG CCG CTTCAGGGTTC-GCG AAGCGGATCTTTGAA Pden_1459 1425006 - 1425662 + | DSBA oxidoreductase Pden_1460 1425659 - 1426087 + | GCN5-related N-acetyltransferase Pden_1461 1426521 - 1426069 - | GCN5-related N-acetyltransferase Pden_1462 1426766 - 1427152 + | GCN5-related N-acetyltransferase Pden_1463 1428117 - 1427197 - | LysR family transcriptional regulator TERM 931 1428448 - 1428468 + G 79 -11.9 -4.09685 | CGGTCGGGTATTCCT CGCCGAAGA GCA TTTTCGGCG TTTTGAACGCTCCGC Pden_1464 1428263 - 1429180 + | aminotransferase, class IV Pden_1465 1429911 - 1429171 - | hypothetical protein TERM 932 1429844 - 1429831 - G 86 -3.7 -5.15969 | CGGGAAGGTAAAAAA CGTGC CCCC GCCCG CGATCGCATTGCACA Pden_1466 1430186 - 1430767 + | helix-turn-helix domain-containing protein Pden_1467 1431402 - 1430770 - | lysine exporter protein LysE/YggA Pden_1468 1431950 - 1431405 - | hypothetical protein TERM 933 1431501 - 1431487 - G 71 -11.4 -3.6502 | GACGCCTCATTCAAA TGGCCC CTT GGGCCA AGACGGCGCGGCCAG TERM 934 1431724 - 1431690 - G 76 -7.1 -4.31433 | overlap 1431691 CACGGCGACAAGAAA TGC-CGCGGCGATCGCC CGG GACGA-CGCCGCACGCC AATGGGCAAAGAGCA TERM 935 1432156 - 1432127 - g 72 -6.9 -4.25283 | opp_overlap 1432152 AGCGCTTCAGGAAAA CGCCCGCACCCCG CTAT CGGAGGTCGGCCG ACGTGTCGGGCTTTC Pden_1469 1432068 - 1432523 + | AsnC family transcriptional regulator Pden_1470 1432553 - 1433176 + | lysine exporter protein LysE/YggA Pden_1471 1433351 - 1434349 + | LysR family transcriptional regulator TERM 936 1434764 - 1434775 + G 72 -5.8 -4.32857 | overlap 1434754 TGTCAGTCCCGCAGA TGCG CGGG CGCA TTTCTCTTTGGCAGA Pden_1472 1434342 - 1435595 + | methyltransferase type 12 Pden_1473 1436129 - 1435611 - | dehydratase TERM 937 1436169 - 1436188 + r 71 -12.2 -3.20723 | TTCACCGCAGCCCCG CTCAGCTC ATGC GAGCTGAG TTCGATTGCTGGCAA Pden_1474 1436496 - 1436263 - | hypothetical protein Pden_1475 1437620 - 1436499 - | conjugation TrbI family protein Pden_1476 1438645 - 1437617 - | conjugal transfer protein TrbG/VirB9/CagX Pden_1477 1439331 - 1438642 - | conjugal transfer protein Pden_1478 1440680 - 1439328 - | TrbL/VirB6 plasmid conjugal transfer protein Pden_1479 1440971 - 1440684 - | hypothetical protein Pden_1480 1441771 - 1440989 - | conjugal transfer protein TrbJ TERM 938 1441093 - 1441115 + g 71 -11.3 -3.54424 | gap 1 TGGCGCGCTCGGCCT CGGTCAGCGC GTTG GCGC-GACCG TTTGCCGAGATCACC Pden_1481 1444278 - 1441768 - | AAA ATPase Pden_1482 1444578 - 1444285 - | conjugal transfer protein trbB Pden_1483 1444977 - 1444645 - | conjugal transfer protein TrbC Pden_1484 1445972 - 1444974 - | type II secretion system protein E TERM 939 1445907 - 1445932 + g 71 -11.1 -3.61806 | gap 1, overlap 1445911 GGCGATCGCCGGCCC GAGCGCGG-TGC GCA GCATCCGCGCGC TTCTCTGGTTCATCT TERM 940 1446053 - 1446036 - H 70 -5.5 -4.24342 | overlap 1446037 GGGTCGATTAAGAAA GCCGTAG ATGC CTAGGGC TCAACAGGTTTCCAA TERM 941 1446297 - 1446284 - H 76 -2.3 -4.88067 | AGCGATCTATAAAAA CTGCA CCTT TGCTG GACATGCAATTTCCC TERM 942 1446469 - 1446481 + G 79 -4.8 -4.7373 | CACCGGGACTGGTAT TGGC GCACA GCCA TTTTTCGTCCGCTCA TERM 943 1447156 - 1447171 + G 75 -4.6 -4.62069 | opp_overlap 1447157, overlap 1447157 GAAGTTTTACCGAAA TCGCGG CAGA CTGCGG TTTTTCCGATGCCAG Pden_1485 1446345 - 1447265 + | helix-turn-helix domain-containing protein Pden_1486 1447354 - 1449435 + | TonB-dependent receptor Pden_1487 1449435 - 1450445 + | methyltransferase type 12 Pden_1488 1450447 - 1451349 + | putative sulfonate/nitrate transport system substrate-binding protein Pden_1489 1451349 - 1452080 + | binding-protein-dependent transport systems inner membrane component Pden_1490 1452077 - 1452658 + | ABC transporter related Pden_1491 1453366 - 1452668 - | TetR family transcriptional regulator Pden_1492 1455184 - 1453406 - | ABC transporter related TERM 944 1454306 - 1454293 - G 86 -3.7 -5.14477 | CATACATGGAAAAAA GGAGC AGGA GCGCC GTGATGGCAGTGCCC Pden_1493 1457001 - 1455181 - | ABC transporter related TERM 945 1456569 - 1456585 + g 75 -5.1 -4.56597 | TCTCCAGCCGCTCCG GCTCATC CAC GATCAGC TTTTTCGCACCGCCG Pden_1494 1458244 - 1457084 - | monooxygenase, FAD-binding Pden_1495 1460236 - 1458248 - | TonB-dependent receptor Pden_1496 1461420 - 1460233 - | major facilitator transporter TERM 946 1460759 - 1460735 - G 72 -4.2 -4.65895 | gap 1 GCGTCCAGCGAAAAA CCGGCATCCAC AAGC ATGGG-GCCGG TCATCGCCGCACCGA Pden_1497 1461579 - 1462580 + | helix-turn-helix domain-containing protein Pden_1498 1463827 - 1462601 - | major facilitator transporter TERM 947 1462732 - 1462701 - G 74 -15.8 -2.76964 | opp_overlap 1462725 1462726, overlap 1462682 1462698 1462696 CCATACCCAATATGA GCGGCCATGGGCGC ACCT GCGGACATGGCCGC AATCGCGGCGAATTG Pden_1499 1465779 - 1463830 - | TonB-dependent receptor Pden_1500 1466069 - 1467028 + | helix-turn-helix domain-containing protein TERM 948 1467207 - 1467165 - T 88 -9 -4.62069 | overlap 1467166 TCGTGACTGCAAAAA CCGAGGAAGCAGCGCTACAG CGG CTCTCGCGCTCCTACCCCGA GCGCGAAATGACGGT Pden_1501 1467746 - 1467357 - | hypothetical protein Pden_1502 1468083 - 1467733 - | hypothetical protein TERM 949 1468039 - 1468029 - G 71 -2.4 -4.57073 | CAGCGCCCCGAAAAA CGCG AAA CGTG AGTTCAGACAGGGCG Pden_1503 1469287 - 1468070 - | hypothetical protein Pden_1504 1470022 - 1469486 - | hypothetical protein Pden_1505 1470884 - 1470456 - | hypothetical protein Pden_1506 1472872 - 1470887 - | TRAG family protein TERM 950 1471377 - 1471409 + g 90 -9.8 -4.74801 | gap 1, opp_overlap 1471374, overlap 1471381 GACACCATGAGATGG CTGAGCCAGGGCGCC AGAC GGTGCCC-GGCATAG TTTTTCATCGCCTTC Pden_1507 1474653 - 1472899 - | hypothetical protein Pden_1508 1475661 - 1474897 - | lytic transglycosylase, catalytic Pden_1509 1475999 - 1475664 - | hypothetical protein TERM 951 1475819 - 1475796 - G 70 -3.6 -4.47183 | opp_overlap 1475779 1475796 1475800, overlap 1475798 CAGGACCGAAACAAA CGCTCCTGCG ATTT CGCCGGTGTG TTTCCAGCCCGCGCC Pden_1510 1476608 - 1476066 - | conjugal transfer protein precursor Pden_1511 1477126 - 1476605 - | hypothetical protein TERM 952 1476976 - 1476956 - G 90 -4.7 -5.24531 | ACCCGGCATAAAAAA GACCACA CGTCGGC TGCGGTC CAGGACCTGCTCCCC Pden_1512 1478298 - 1477126 - | replication protein A TERM 953 1477662 - 1477643 - G 74 -10.7 -3.71649 | opp_overlap 1477655, overlap 1477636 TGGTGAAAGTCGAAA CGCCAGC CATCGC GCTGGCG GCCACCGTGCTTGCG Pden_1513 1478598 - 1478317 - | hypothetical protein Pden_1514 1479131 - 1478736 - | hypothetical protein Pden_1515 1479561 - 1479202 - | hypothetical protein TERM 954 1479591 - 1479613 + r 74 -12.8 -3.29511 | opp_overlap 1479588 CGCCCCAAGGCATCA GGTGATGCGT GGC ACGTATCACC TTCTCAGCCGGTGCG Pden_1516 1479880 - 1479617 - | hypothetical protein Pden_1517 1480243 - 1479986 - | XRE family transcriptional regulator Pden_1518 1480753 - 1480430 - | hypothetical protein Pden_1519 1480790 - 1481251 + | hypothetical protein Pden_1520 1481747 - 1481310 - | hypothetical protein TERM 955 1481403 - 1481378 - G 74 -12.5 -3.61764 | overlap 1481370 GGAGGAAGGCGGAAA CGCCAACGGCG CCAG CGCCGATGACG GCGAAGATCATCTGC TERM 956 1481486 - 1481470 - G 75 -10.1 -4.07687 | AGGGTGGCGTGAAAA CCGACGA CCA TCGCCGG CACCACGAAGATCAG Pden_1521 1481913 - 1482437 + | hypothetical protein Pden_1522 1482485 - 1482733 + | hypothetical protein Pden_1523 1483478 - 1482702 - | putative restriction endonuclease Pden_1524 1485439 - 1483478 - | putative chromosome segregation SMC protein Pden_1525 1489808 - 1485429 - | hypothetical protein TERM 957 1486044 - 1486060 + g 72 -6.5 -4.27062 | overlap 1486030 1486040 GCGGCGAGTGCGGTA TTCGCCG TGT TGGCGGA TTTCCTTTTCCTTCA TERM 958 1487392 - 1487349 - G 70 -3.4 -4.46656 | gap 3, overlap 1487343 GGCAGAATAGGAAAA GCG-ATTTGATGCGCGAGCAA ATTCA TTGG-CG-GCATCAAATTCGC GCTTCCCAAGAACAT Pden_1526 1492582 - 1489811 - | helicase domain-containing protein TERM 959 1490395 - 1490405 + g 75 -6.8 -4.41494 | AGCCCTTCAGCCCAC GCTG CTC CAGC TTTTCCTTGAGGCTA TERM 960 1490598 - 1490611 + g 81 -3.7 -4.93968 | opp_overlap 1490598 GCATTTTGTGCAAAC CGGGC ACGT GACCG TTTTTCATTCTCGCT Pden_1527 1497761 - 1492584 - | DEAD/DEAH box helicase domain-containing protein TERM 961 1495231 - 1495254 + g 76 -2.4 -4.72272 | gap 1, overlap 1495233 1495234 GCCCGAAGAAGCGTT TGTTCTTCACG CAG CGTGACGA-CG TTTTTGCTGCCCGCG TERM 962 1495286 - 1495299 + g 77 -3.7 -4.70319 | opp_overlap 1495280, overlap 1495287 GCAGGACAAGCGAGG ACCGC GCTC GCGGA TTTTCCTTTTGGTCA Pden_1528 1499684 - 1497762 - | hypothetical protein Pden_1529 1500635 - 1499748 - | hypothetical protein TERM 963 1500659 - 1500683 + H 79 -5.6 -4.5954 | TCCGGGCCAGATCGG TGGACCCGCA AACTA TGCGGACCCA TTTTCTGTGCTCTCG TERM 964 1500911 - 1500946 + H 71 -14.2 -2.67209 | opp_overlap 1500909 1500912, overlap 1500903 TCCCCTTCAGGAAGC ATGTTACTTCTGGCAA AAAA TTGCCAGAAGTAACGG TCGTATCAGTTGGTC TERM 965 1500945 - 1500912 - H 78 -15.5 -2.77899 | opp_overlap 1500911 1500903, overlap 1500909 CCCCTTCAGGAAGCA TGTTACTTCTGGCAA AAAA TTGCCAGAAGTAACG GTCGTATCAGTTGGT Pden_1530 1501056 - 1501295 + | hypothetical protein TERM 966 1501616 - 1501637 + T 74 -11.5 -3.57792 | GGCCATTTTGAATCG GTGCAGCGC TCAC GCGCTGCCC TTTGCGAGTCGGTAG Pden_1531 1502551 - 1501625 - | hypothetical protein Pden_1532 1503942 - 1502908 - | hypothetical protein Pden_1533 1508264 - 1503942 - | methylase/helicase TERM 967 1506285 - 1506253 - G 72 -6.1 -4.27316 | opp_overlap 1506279 GTCTGGAACGGAAAA TCCTCACCGCCCCAG AGG CCGAGGCGCTGCGCA TAGGCGAGATTGTGG TERM 968 1507995 - 1508028 + g 70 -12.6 -3.34398 | gap 1, opp_overlap 1507994 1507995, overlap 1507993 1508001 CGCGAGCCGGGAAAC CGGAGAGGCGGCTTT GCGGA AAAGC-GCCTTTCCG TATTTGCGCAGGAAC TERM 969 1508402 - 1508367 - H 70 -11.1 -3.4072 | gap 1 GACTCTTCATCACAA GCCCCATCGCCCCGCC CATGC GG-GGGGCGACAGCGC TCCGCCATCAACTTT Pden_1534 1508430 - 1510043 + | filamentation induced by cAMP protein Fic Pden_1535 1510699 - 1510055 - | hypothetical protein Pden_1536 1511108 - 1510692 - | hypothetical protein Pden_1537 1511731 - 1511174 - | hypothetical protein Pden_1538 1512180 - 1511923 - | hypothetical protein Pden_1539 1512808 - 1512503 - | hypothetical protein TERM 970 1512849 - 1512829 - R 93 -4.6 -5.27335 | TTCTCCAAAGAAAAA GCCCGGTC ACGAG GACGGAGC CATTCCGAGATGTAG TERM 971 1512869 - 1512892 + r 100 -16 -4.78848 | opp_overlap 1512869 CCGAGATGTAGGACA CGGGCGGCAG GAAA CTGTCGCCCG TTTTCTGTTTGAAGC TERM 972 1512892 - 1512869 - R 73 -13.8 -2.82015 | opp_overlap 1512869 CCGAGATGTAGGACA CGGGCGGCAG GAAA CTGTCGCCCG TTTTCTGTTTGAAGC Pden_1540 1515234 - 1512910 - | hypothetical protein TERM 973 1515611 - 1515586 - R 100 -20.5 -5.2853 | GACGGAAAAACAAAA GCCTGCCGACC TCTT GGTCGGCAGGC AAGTAGGGCGTGTGT TERM 974 1515714 - 1515683 - R 70 -14.4 -2.58812 | opp_overlap 1515680 1515690, overlap 1515679 1515674 1515700 CGGAAACGGAAGGGA TGAGGCGGGGCAGC GAAG GCCACCCCGCCTGA GCATCATTCGGCGGC Pden_1541 1517844 - 1515718 - | parB-like partition proteins TERM 975 1515870 - 1515884 + g 70 -8.5 -3.87815 | CCATGCGCAGTGGCG CCGGC AACCA GCCGG TTTCTGCCAGTAGCC TERM 976 1517982 - 1517966 - R 71 -9.3 -3.7948 | opp_overlap 1517970 CGAATACCCATCAAA GCTCGCC GCG GGCGCGC AGGCTTGTCTCCCGT Pden_1542 1518449 - 1517961 - | DNA repair protein RadC TERM 977 1518543 - 1518512 - R 100 -22.4 -3.84406 | GCGTCACGAGAAGAA GCGCCGCCCTCTTC CTGC GAAGAGAGCGGCGC CGAAGCTGCAGAACC Pden_1543 1518956 - 1518561 - | hypothetical protein Pden_1544 1519915 - 1518953 - | hypothetical protein Pden_1545 1520277 - 1520594 + | histone family protein nucleoid-structuring protein H-NS Pden_1546 1520610 - 1521227 + | ORF-3 family protein Pden_1547 1521563 - 1521871 + | XRE family transcriptional regulator Pden_1548 1521861 - 1523102 + | HipA domain-containing protein TERM 978 1523325 - 1523310 - f 72 -3.2 -4.59982 | overlap 1523311 1523319 1523320 TGAGAAGGAAACAAA GCACGA AAAC TCGTGT GCAAATACTGCACAC TERM 979 1523343 - 1523319 - f 78 -7.9 -4.41897 | overlap 1523311 1523310 1523320 AACAAAGCACGAAAA CTCGTGTGCAA ATA CTGCACACAAA ACCCATCAAACATTT Pden_1549 1523662 - 1523889 + | hypothetical protein Pden_1550 1524346 - 1523870 - | hypothetical protein TERM 980 1524645 - 1524626 - R 100 -12.8 -5.64274 | CCACCGATAAAAAAA GGGCGACC CGAA GGCCGCCC TGGAGAGAGGAGGGA Pden_1551 1525593 - 1524673 - | hypothetical protein TERM 981 1525939 - 1525923 - R 100 -5.8 -5.94713 | opp_overlap 1525923 ATTGCACAAAAAAAA GGCAGC CGATC ACTGCC TTTTGCAGGATAAAA TERM 982 1526017 - 1525989 - R 100 -12.3 -4.65895 | overlap 1525990 1526007 GTGGCGACGCAAAAA TGCAGCGCCGGTC ACG AACCGGCGCGGCG ATCAGCGCCGGCGCG TERM 983 1526016 - 1525990 - R 88 -15.8 -3.39216 | overlap 1525989 1526007 TGGCGACGCAAAAAT GCAGCGCCGGTC ACG AACCGGCGCGGC GATCAGCGCCGGCGC TERM 984 1526028 - 1526007 - R 72 -12.9 -3.14211 | overlap 1525990 1525989 AGCGCCGGTCACGAA CCGGCGCGG CGAT CAGCGCCGG CGCGTGGCGGCGGAG Pden_1552 1526324 - 1526019 - | hypothetical protein Pden_1553 1526939 - 1526439 - | NusB antitermination factor Pden_1554 1527487 - 1526936 - | 6,7-dimethyl-8-ribityllumazine synthase Pden_1555 1528610 - 1527492 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase Pden_1556 1529178 - 1528600 - | hypothetical protein Pden_1557 1529771 - 1529178 - | riboflavin synthase subunit alpha Pden_1558 1530081 - 1531403 + | capsule polysaccharide biosynthesis Pden_1559 1531502 - 1532680 + | polysaccharide export protein TERM 985 1532703 - 1532724 + G 100 -18.7 -4.34402 | opp_overlap 1532701, overlap 1532717 CATCCCAAGGACAGG GCCGCCGGG GATT CCCGGCGGC TTTTCATATGCAGCG TERM 986 1533324 - 1533304 - g 73 -9.6 -3.92869 | opp_overlap 1533303 GCAGCCATCCAGAAA CGGCGCGC GGCCT GCGCCCCG GTCATTTCACCCAGC Pden_1560 1532685 - 1534676 + | capsule polysaccharide biosynthesis Pden_1561 1535650 - 1534673 - | riboflavin biosynthesis protein RibD Pden_1562 1536129 - 1535665 - | transcriptional regulator NrdR Pden_1563 1536368 - 1537492 + | TRAP dicarboxylate transporter- DctP subunit TERM 987 1537513 - 1537540 + T 100 -24.2 -4.54727 | TGCCGGATTGCATCG GGGCCGCCGCGA GAAA TCGCGGCGGCCC TTTTCGTTTCAGGCG TERM 988 1537588 - 1537571 - T 95 -10.5 -4.78149 | opp_overlap 1537565 1537571, overlap 1537564 GCGACAACGGAAAAA GGCGACC GGAA GGCCGCC TTTCCCTTGTCAGTT Pden_1564 1539490 - 1537598 - | TRAP dicarboxylate transporter, DctM subunit Pden_1565 1540110 - 1539487 - | tripartite ATP-independent periplasmic transporter DctQ TERM 989 1540243 - 1540227 - R 82 -4.3 -5.06816 | overlap 1540215 1540242 ACCCGTCAAGAAAAA CGCGACG CGA CGTAACG GCGGCTAGACGAGCG Pden_1566 1541015 - 1540248 - | cobalamin 5'-phosphate synthase Pden_1567 1541964 - 1541008 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Pden_1568 1542494 - 1541961 - | adenosylcobinamide kinase Pden_1569 1542634 - 1544238 + | extracellular solute-binding protein Pden_1570 1544305 - 1545222 + | binding-protein-dependent transport systems inner membrane component Pden_1571 1545226 - 1546149 + | binding-protein-dependent transport systems inner membrane component Pden_1572 1546151 - 1547206 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_1573 1547203 - 1548216 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_1574 1548274 - 1548759 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TERM 990 1548770 - 1548745 - T 93 -18.3 -3.59262 | TCGGACATGCTGAAA CCCCCGGCGGA GTGA TCCGCCGAGGG CCGCAGGAAAGCCGG Pden_1575 1551090 - 1548796 - | hypothetical protein lysK 1552823 - 1551231 - | lysyl-tRNA synthetase Pden_1577 1552915 - 1553337 + | hypothetical protein Pden_1578 1554802 - 1553348 - | peptidase S13, D-Ala-D-Ala carboxypeptidase C nadD 1555404 - 1554802 - | nicotinic acid mononucleotide adenylyltransferase TERM 991 1555380 - 1555349 - G 74 -14.4 -3.37344 | gap 1 GCGGGATCGAAGGAA CCGCCCAGCA-GCCC GAC GGTCATGCCGGGCGG CGCAAAGGGAAAGCC Pden_1580 1557075 - 1555408 - | formate--tetrahydrofolate ligase Pden_1581 1558279 - 1557146 - | hypothetical protein TERM 992 1557400 - 1557344 - G 78 -6.9 -4.63479 | overlap 1557346 GACGATAAAGGAAAA CAGCCCGCCGCGCCCGATCTCGGCCAG CGC CTCGCCCGGAGCGGTCGCGGCCATCCA GGCGAAAGGCCGCGC TERM 993 1557398 - 1557346 - G 73 -9.5 -3.91676 | overlap 1557344 CGATAAAGGAAAACA GCCCGCCGCGCCCGATCTCGGCCAG CGC CTCGCCCGGAGCGGTCGCGGCCATC CAGGCGAAAGGCCGC Pden_1582 1560450 - 1558276 - | glucosyltransferase MdoH TERM 994 1560095 - 1560085 - G 75 -4.6 -4.56914 | overlap 1560086 CGAGGTAAAGGAAAA CCCG ACC CAGG TGAAGGTCAGCGCGA mdoG 1562045 - 1560447 - | glucan biosynthesis protein G TERM 995 1562089 - 1562075 - H 85 -7.8 -4.63218 | opp_overlap 1562083 TTTCGGGCAAGAAAA CCCGGA AAT TCCGAG GGGATTTCGCATTGC TERM 996 1562226 - 1562168 - g 100 -19.5 -4.19258 | gap 1, opp_overlap 1562223, overlap 1562180 AGAGTTGATCGAAAA GCT-CCGCCGAAACGGGCCGCGCCGGCT GGAA AGCCCGCGCGGCCCGATCCGCCTGCAAC CTGCCTTAGCGGTTG TERM 997 1562213 - 1562180 - g 100 -25.3 -3.5394 | overlap 1562168 AAAGCTCCGCCGAAA CGGGCCGCGCCGGCT GGAA AGCCCGCGCGGCCCG ATCCGCCTGCAACCT TERM 998 1562457 - 1562487 + G 82 -16.8 -3.30124 | CGCGGCGGGAGCCTC GGGCGCGGCGCC AGCGGGC GGCGGCGCGCCC TTCTCGCCACTGCGG Pden_1584 1562157 - 1563164 + | hypothetical protein TERM 999 1563683 - 1563706 + G 71 -10.9 -3.65199 | CTGTCCACCCAGCTT GCCGCCGCC ATGCGC GACGGCGGC TTTGCCTGCGACATT Pden_1585 1563635 - 1564297 + | two component transcriptional regulator Pden_1586 1564294 - 1565634 + | integral membrane sensor signal transduction histidine kinase TERM 1000 1565745 - 1565720 - T 72 -8.9 -4.07568 | opp_overlap 1565724 CTCTGGTCTTGAAAA CCAGCGTGGGG GAGA CCCCACCGTGG GTTCGAATCCCACCG TERM 1001 1565880 - 1565863 - T 86 -14.1 -3.7511 | TGCGCGACAAGACAA GGCCGGC AATC GCCGGCC CTTGGAAGGATCGAG Pden_1587 1566239 - 1565928 - | ETC complex I subunit region Pden_1588 1566388 - 1568613 + | excinuclease ABC subunit B Pden_1589 1568943 - 1568656 - | hypothetical protein Pden_1590 1569678 - 1569043 - | cobyrinic acid a,c-diamide synthase TERM 1002 1569589 - 1569570 - G 70 -12.8 -3.28924 | overlap 1569581 GATCGGTGTCCAGAA GCGCGACC GAAT GGCCGCGC CCGCGCAGGGCCACC Pden_1591 1570104 - 1569781 - | antibiotic biosynthesis monooxygenase TERM 1003 1570267 - 1570249 - H 88 -16 -3.31144 | GCGGCACGCGCATAA GCGGCGCA TGT TGCGCCGC GCAATGCGAAAGGAC Pden_1592 1570289 - 1571338 + | peptidase M19, renal dipeptidase Pden_1593 1573090 - 1571549 - | Ppx/GppA phosphatase TERM 1004 1572837 - 1572825 - G 78 -10.5 -4.15565 | overlap 1572826 GCCAGGACCGCAAAA CGGCG CAG CGCCG CCATGCCGCGGCGCA TERM 1005 1572881 - 1572911 + g 70 -3.9 -4.48987 | overlap 1572881 CAGCCGGCCGGTGGT GG-CAAGGCCCGAGC CCA GCCCGG-CCATGACC TTTTCGTTGTAGAAA Pden_1594 1574460 - 1573159 - | polyphosphate kinase TERM 1006 1573199 - 1573228 + g 78 -10 -4.18018 | gap 1 GGAACGTCGCGGGCA CCCG-CACTGCCG CGTCC CGACAGTGACGGG TTTTCCATGAAGAAC TERM 1007 1573274 - 1573258 - G 72 -5.7 -4.34402 | CTTGTGACAGGAAAA CAGGTCG TCC CGTCCCG CCGGCAGATAACGCA TERM 1008 1574486 - 1574502 + H 81 -11.5 -4.07568 | ATGCTTTGCCCTCTC GCCGCGG GTC CTGCGGC TTTTCGGACGACCGG TERM 1009 1574514 - 1574540 + H 79 -11.5 -3.82665 | CGGCTTTTCGGACGA CCGGCGCGGCA TGGCT TGCCGTTCCGG TTTAGTAATGTAATA Pden_1595 1574589 - 1575380 + | ABC transporter related Pden_1596 1575380 - 1576246 + | ABC-3 protein Pden_1597 1576266 - 1577195 + | periplasmic solute binding protein TERM 1010 1577423 - 1577395 - g 76 -8.1 -4.30576 | overlap 1577396 CGGCGATCATGAAAA GGGCCAGGTCA CGGCGTT CGACCTGGCCG AACCCGATCATCGCT Pden_1598 1577267 - 1578493 + | hypothetical protein TERM 1011 1578512 - 1578531 + T 89 -12.8 -4.05788 | opp_overlap 1578512 AGGCACGACACGAAA GGGGGCGG CAAA CCGCCCTC TTTGCTTTCCGGCCG TERM 1012 1578531 - 1578512 - T 75 -10.6 -3.8647 | opp_overlap 1578512 AGGCACGACACGAAA GGGGGCGG CAAA CCGCCCTC TTTGCTTTCCGGCCG Pden_1599 1579401 - 1578721 - | glutathione S-transferase domain-containing protein Pden_1600 1580333 - 1579401 - | LysR family transcriptional regulator TERM 1013 1579595 - 1579545 - G 71 -9.7 -3.76775 | overlap 1579580 GGCAAGATAGCCAAA GACGATGCGGACCGAGTTGC-GCAC TTC GGACAGCACCACGATCCGC-TCGTC GGGCGGCAAGGGCGC Pden_1601 1581911 - 1580445 - | major facilitator transporter TERM 1014 1580837 - 1580805 - G 80 -17.1 -2.95223 | gap 1 CAACGCCAGGACATA GCCGGCCGTGCCCA GCATGT TGGGCA-GGCCGGC CAGCGCGAAAGCCCC Pden_1602 1583947 - 1581989 - | TonB-dependent receptor, plug Pden_1603 1585242 - 1584109 - | dihydrolipoyllysine-residue succinyltransferase Pden_1604 1587324 - 1585243 - | transketolase, central region Pden_1605 1587946 - 1587353 - | flavoprotein Pden_1606 1588795 - 1587959 - | methyltransferase type 12 TERM 1015 1588265 - 1588277 + g 72 -3.3 -4.62069 | overlap 1588260 CAGGAACACCGTCTG GGGCA CCA TGACC TTTTTCGCCTCGGCC TERM 1016 1590279 - 1590323 + G 78 -9.2 -4.3739 | gap 2, overlap 1590315 1590317 TTGCTGGTCGATCCC GCGCCGGGCCCGGTGCTGGCCA ACC TGGGCAGCGACG--CCCTGCGC TTTTATGCGCCGGTC Pden_1607 1588977 - 1590524 + | dehydratase Pden_1608 1590526 - 1592076 + | extracellular solute-binding protein Pden_1609 1592073 - 1593071 + | binding-protein-dependent transport systems inner membrane component Pden_1610 1593071 - 1593844 + | binding-protein-dependent transport systems inner membrane component Pden_1611 1593841 - 1595223 + | ABC transporter related Pden_1612 1595760 - 1595224 - | ChaC family protein Pden_1613 1596941 - 1595760 - | acyl-CoA dehydrogenase domain-containing protein Pden_1614 1597413 - 1596964 - | thioesterase superfamily protein Pden_1615 1598061 - 1597420 - | hypothetical protein TERM 1017 1598125 - 1598183 + r 71 -3.9 -4.4648 | gap 3, opp_overlap 1598126, overlap 1598104 1598126 CGTGTCCGGCACAAA TCGGAAATTCTGAT-GGGCAACCC-CGG CTATAT CCGAGGGCTGCCCCGGCAGG-TTTCCGC TTTTCTCATGGAGAT Pden_1617 1599460 - 1599137 - | transposase IS3/IS911 family protein TERM 1018 1599525 - 1599500 - R 89 -13.2 -4.08216 | opp_overlap 1599517 1599518 GGAGCCTCCGGAAAA CCCGGCGCGG TTCACT CCGCGCCCGG CGCATTTGCTCAGAA Pden_1618 1600507 - 1599713 - | flagellar protein, putative TERM 1019 1599822 - 1599801 - G 72 -3.7 -4.66537 | opp_overlap 1599787, overlap 1599802 CTTCTCAACAGAAAA CGCTTGAGA ATGA TATCAAGCA CTTCATCCGACTTAA Pden_1619 1601188 - 1600823 - | flagellar FlaF family protein TERM 1020 1601222 - 1601247 + r 82 -15.5 -3.05384 | opp_overlap 1601222 1601225, overlap 1601225 AATCATGTGAAGAAA TAAGGGCGCCT CATC GGGCGCCCTTA TTCGATCAACGGAAC TERM 1021 1601247 - 1601222 - R 95 -14.8 -4.19336 | opp_overlap 1601222 1601225, overlap 1601225 AATCATGTGAAGAAA TAAGGGCGCC TCATCG GGCGCCCTTA TTCGATCAACGGAAC TERM 1022 1601244 - 1601225 - R 95 -12.1 -4.21438 | opp_overlap 1601225 1601222, overlap 1601222 CATGTGAAGAAATAA GGGCGCC TCATCG GGCGCCC TTATTCGATCAACGG TERM 1023 1601225 - 1601244 + r 81 -12.8 -3.67597 | opp_overlap 1601222 1601225, overlap 1601222 CATGTGAAGAAATAA GGGCGCCT CATC GGGCGCCC TTATTCGATCAACGG Pden_1620 1602107 - 1601253 - | flagellin domain-containing protein TERM 1024 1602151 - 1602136 - R 70 -2.4 -4.63218 | opp_overlap 1602148, overlap 1602138 1602139 CCCGTTTCAAGAAAA GAGCGG TCTT CCGACC GACAGGGCGAACCTG Pden_1621 1602574 - 1602260 - | hypothetical protein TERM 1025 1603359 - 1603338 - g 81 -3.7 -4.82667 | TCATCAGATTAAAAA GCTACAACA TGTG CGCTATAGC GTTATCACGTCCCAA Pden_1622 1602940 - 1604133 + | hypothetical protein TERM 1026 1604512 - 1604524 + G 70 -3.3 -4.4634 | opp_overlap 1604501 AGAAGGCACTGCCGA TGCCG AAA CTGCA TTTCTTGTTACCCTT TERM 1027 1604614 - 1604641 + G 70 -3.5 -4.51196 | gap 1, opp_overlap 1604619 TTGGCACGGCGAGGA TCCAAGTGGCAA TATGC TTGCGAC-TGGA TTTTATAGCTTTCGC flgD 1604147 - 1604812 + | flagellar basal body rod modification protein TERM 1028 1605313 - 1605286 - g 71 -11.2 -3.61089 | gap 1, opp_overlap 1605302, overlap 1605280 CCTGAAGAAGCAGAA CGCGGACGC-CCC GGC GGGCGCGCCAGCG CCTGTGGTGGAGATC Pden_1624 1605044 - 1605415 + | transposase IS3/IS911 family protein Pden_1626 1606682 - 1606371 - | hypothetical protein TERM 1029 1606809 - 1606778 - R 84 -13 -3.80625 | overlap 1606807 GTGGCAGAACGGAAA TGGCCCCTGCCCCA ACGT CGGAGCAGAGACCA AAGCCGCGCGCACCA TERM 1030 1606815 - 1606838 + r 81 -10.9 -4.19238 | opp_overlap 1606812 1606807, overlap 1606814 GCAGAGACCAAAGCC GCGCGCACC ACCAAG GGCGCGCGC TTTTGCAATTACGCC Pden_1627 1608202 - 1606847 - | hypothetical protein TERM 1031 1608208 - 1608198 - G 82 -6.8 -4.77896 | opp_overlap 1608204, overlap 1608202 TAACGAAGGGAAAAA GCCA TGC TGGC TCCTGCAAGTTCGGT Pden_1628 1610312 - 1608270 - | TonB-dependent receptor, plug TERM 1032 1608552 - 1608569 + g 70 -8.3 -3.8505 | overlap 1608566 GCTGTTGTTGAAGGC GGCGCCG ACAT CCGCGCC TTTGGTGATCTTGCT Pden_1629 1610564 - 1611091 + | ECF subfamily RNA polymerase sigma-24 factor TERM 1033 1611188 - 1611243 + G 70 -12.6 -3.28791 | overlap 1611148 1611171 1611189 CCGATCCCGCGCTGC AGCACG-ATCCGGCCTTTCGCCGCTG GCTGGA CGGCGGCG-AGGACCGGGTGCGTGCG TTCTCGGACGCGCGT TERM 1034 1611189 - 1611242 + G 73 -16.1 -2.57132 | overlap 1611148 1611171 1611188 CGATCCCGCGCTGCA GCACG-ATCCGGCCTTTCGCCGCTG GCTGGA CGGCGGCG-AGGACCGGGTGCGTGC GTTCTCGGACGCGCG Pden_1630 1611103 - 1612077 + | putative FecR TERM 1035 1613872 - 1613926 + G 79 -11.2 -4.08692 | opp_overlap 1613876 1613877 GCGGAGCAGGAATTA CGAACTCGGCCTGATCTGGGAGGCGC CGG GCGGCATCCAGATCGGGGCGACCGCG TTTTACACGCGCTTC Pden_1631 1612232 - 1614451 + | TonB-dependent receptor, plug Pden_1632 1614613 - 1614864 + | hypothetical protein TERM 1036 1615867 - 1615896 + G 73 -7.8 -4.13767 | gap 2, opp_overlap 1615861, overlap 1615862 GCGACATGATCGCCC GCGGCAGCGCGGCC GAGC GGCAGCGC-GC-GC TTTTCGCCTCGGCCA Pden_1633 1614861 - 1615991 + | carboxylate-amine ligase TERM 1037 1616067 - 1616037 - f 81 -11 -4.16016 | opp_overlap 1616041 CCACCCCGGAACAAA GCGCCGCGGCACGG GTT CCGTCCCCCGACAC TCGTGAACCGGAGGA Pden_1634 1616089 - 1616586 + | superoxide dismutase, copper/zinc binding Pden_1635 1617704 - 1616616 - | signal transduction histidine kinase Pden_1636 1617928 - 1618539 + | isochorismatase hydrolase Pden_1637 1618639 - 1618875 + | hypothetical protein TERM 1038 1619043 - 1619015 - T 95 -16.7 -4.13995 | overlap 1619016 GCTGTAGAAAGGAAA GGGGCACAGGCCG CAG CAGCCTGTGCCCA CAGGAACCTTCAATC TERM 1039 1619042 - 1619016 - T 100 -20.2 -3.07915 | overlap 1619015 CTGTAGAAAGGAAAG GGGCACAGGCCG CAG CAGCCTGTGCCC ACAGGAACCTTCAAT Pden_1638 1619235 - 1619053 - | hypothetical protein TERM 1040 1619962 - 1619975 + r 72 -3.1 -4.64591 | gap 1 AGTGCGGATCTTTCG GC-CCA TTC TGGAGC TTTTGTGTCTAGTTC Pden_1640 1620940 - 1619984 - | phosphate acetyltransferase Pden_1641 1621969 - 1620953 - | hypothetical protein TERM 1041 1622237 - 1622201 - R 100 -21.5 -3.36327 | overlap 1622202 GGACGGGACGCAGAA GGCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGCA CCCGATCAGGCGGCG TERM 1042 1622236 - 1622202 - R 100 -25 -2.61582 | overlap 1622201 GACGGGACGCAGAAG GCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGC ACCCGATCAGGCGGC Pden_1642 1624024 - 1622243 - | sulfoacetaldehyde acetyltransferase Pden_1643 1625428 - 1624037 - | FAD dependent oxidoreductase Pden_1644 1625856 - 1625437 - | hypothetical protein Pden_1645 1627211 - 1625871 - | TRAP dicarboxylate transporter, DctM subunit Pden_1646 1627768 - 1627208 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1043 1627839 - 1627813 - R 79 -10.7 -4.11692 | overlap 1627814 GATGGATCGGGAAAA GGGCGGGCGCG GCCTG CGCGCCCGCAG TCGGGGGAGGAACCT TERM 1044 1627838 - 1627814 - R 76 -14.2 -3.06694 | overlap 1627813 ATGGATCGGGAAAAG GGCGGGCGCG GCCTG CGCGCCCGCA GTCGGGGGAGGAACC Pden_1647 1628863 - 1627853 - | TRAP dicarboxylate transporter, DctP subunit TERM 1045 1628368 - 1628393 + g 82 -6.1 -4.67904 | gap 1 GCACCACGACGCCCT GCAGGTCGGCCA CCG TGGC-GATCGGC TTTTTCGAGTTGGTC Pden_1648 1628978 - 1630465 + | GntR family transcriptional regulator Pden_1649 1630782 - 1631291 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase Pden_1650 1631313 - 1632542 + | beta-ketoacyl synthase Pden_1651 1632562 - 1633350 + | short-chain dehydrogenase/reductase SDR TERM 1046 1633423 - 1633459 + G 71 -11.4 -3.65425 | GCGAGGGCCTACCCG TCCTGGCCCTGCCGGG GCTGA CCCGGACGGGACGGGA TTTCGACTATCTGGC Pden_1652 1633350 - 1634177 + | hydrolase or acyltransferase Pden_1653 1635805 - 1634531 - | lytic murein transglycosylase TERM 1047 1635439 - 1635470 + g 70 -12.3 -3.28712 | gap 1 GCACGCCGCCATATT GCGCCAGCGCCGCT CGACC ATCGGC-CTGGCGC TTCTCGGAAACCGCG Pden_1654 1637006 - 1635960 - | lysine--tRNA ligase Pden_1655 1637085 - 1637708 + | elongation factor P TERM 1048 1637720 - 1637757 + T 75 -12 -3.54741 | gap 2, overlap 1637723 CTGACCTCTGAGACT TTC--GGGGGCGGGGCGT CCTG GCGCCCCGCCCCCTTGCA TTTCGCCGCATCATC TERM 1049 1637723 - 1637752 + T 100 -24.3 -3.27525 | overlap 1637720 ACCTCTGAGACTTTC GGGGGCGGGGCGT CCTG GCGCCCCGCCCCC TTGCATTTCGCCGCA TERM 1050 1638047 - 1638015 - T 93 -18.3 -3.7104 | ATCCATATGGAACAA GACGCGCGGCCCCGC CCC GCGGTTCCGCGCGCC GCCATCGAGGAGCAG argC 1639118 - 1638090 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 1051 1639207 - 1639177 - H 81 -14 -3.53444 | opp_overlap 1639177, overlap 1639181 GGAGCGGCCCCGAAA GGGACCGGAACC GGCACTA GGCCCCGGTCCC TGTCATGTCAAGCAA TERM 1052 1639489 - 1639504 + H 72 -3.2 -4.63218 | opp_overlap 1639489, overlap 1639489 TTTCATGCGCAAGAA TGCTGC ATCT GCATCA TTTTATTGCGAGACA TERM 1053 1640106 - 1640127 + G 83 -15.1 -3.62572 | opp_overlap 1640056 CGCCGCCGATGCCGC GGCGCTGGC GGAT GCCGGCGCC TTTGCCGTGGTGCTG TERM 1054 1640170 - 1640148 - g 72 -9 -4.07568 | CGTGGTGCTGGAAAA GCTGCCCGAG GCG CTGGGGCGGC GCATCACGCAAGAGA panB 1639582 - 1640412 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 1055 1640827 - 1640846 + G 71 -2.7 -4.56597 | opp_overlap 1640830, overlap 1640828 CGCTGCTGTTCAACA TGACCGG GGCCGA CCGGGCG TTTTTCGGGGAAAAG Pden_1658 1640409 - 1641257 + | pantoate--beta-alanine ligase Pden_1659 1642682 - 1641303 - | integral membrane sensor signal transduction histidine kinase Pden_1660 1643362 - 1642679 - | two component transcriptional regulator Pden_1661 1643676 - 1643362 - | peptidase TERM 1056 1643744 - 1643720 - H 73 -5.5 -4.42653 | AGGCGACTGACAAAA GCCGGCGGCGA AGC TTGCAGCGGGC GCGACGTGCCGAAGC Pden_1662 1643855 - 1644637 + | hemolysin-type calcium-binding region TERM 1057 1644661 - 1644690 + T 78 -13.6 -3.27503 | overlap 1644660 1644658 1644663 TCCGGCAGCCGGGAT GATGCCGCCGCA TCCCCC TGCGGCGGCATA TATATTATGTATTAC TERM 1058 1644663 - 1644688 + T 86 -16.2 -3.19116 | overlap 1644661 1644660 1644658 CGGCAGCCGGGATGA TGCCGCCGCA TCCCCC TGCGGCGGCA TATATATTATGTATT Pden_1663 1645124 - 1644768 - | Rieske (2Fe-2S) domain-containing protein Pden_1664 1646240 - 1645128 - | 4-hydroxyphenylpyruvate dioxygenase Pden_1665 1646362 - 1646832 + | AsnC family transcriptional regulator Pden_1666 1646854 - 1647954 + | lysine 2,3-aminomutase YodO family protein Pden_1667 1648891 - 1648040 - | ABC transporter related Pden_1668 1649727 - 1648888 - | ABC transporter related TERM 1059 1648938 - 1648948 + g 72 -8.2 -4.07568 | overlap 1648929 CGGTGGGCAGCCGGT CGCC GGT GGCG TTTTCCGGCAGCGCC Pden_1669 1650633 - 1649731 - | binding-protein-dependent transport systems inner membrane component Pden_1670 1651637 - 1650630 - | binding-protein-dependent transport systems inner membrane component TERM 1060 1651257 - 1651245 - G 73 -7.7 -4.18018 | CGCGGTCATGGAAAA CTGGT CGA ACCAG GAACCGCGCTTGATC TERM 1061 1651684 - 1651653 - R 89 -16.6 -3.19246 | opp_overlap 1651648 1651648, overlap 1651642 CGAACCCTAACCTAA GGGCCGTGCAAGGA AGTT TCCCTGCACGGCCG CGAGAGTTTTCAATC Pden_1671 1653327 - 1651711 - | extracellular solute-binding protein TERM 1062 1651956 - 1651942 - G 73 -12.8 -3.40403 | CTCGTTGCACCAGAA GGCGCG GTT CGCGCC GCCCGGATTGGCCGA Pden_1672 1654327 - 1653521 - | myo-inositol catabolism IolB domain-containing protein Pden_1673 1654509 - 1654324 - | hypothetical protein TERM 1063 1654382 - 1654353 - G 76 -7.8 -4.25104 | overlap 1654363 1654365 1654367 1654369 TGCGGTTCAGGAAAA GCGCCACGAACA GATAGA TGCCCGCGGCAC CGAACAGGATGGCCC Pden_1674 1655415 - 1654519 - | xylose isomerase domain-containing protein Pden_1675 1657256 - 1655427 - | thiamine pyrophosphate binding domain-containing protein Pden_1676 1659240 - 1657333 - | ribokinase-like domain-containing protein TERM 1064 1657418 - 1657469 + g 74 -14.3 -3.28712 | ATCTCGGCCACGGCC TCGTCGTCGGTGCGGCGCCCGGC GAGCCA GTCGCGCGCCACATCGCCGAAGA TTGTCCGGCCGACGG Pden_1677 1660044 - 1659244 - | xylose isomerase domain-containing protein Pden_1678 1661063 - 1660053 - | inositol 2-dehydrogenase TERM 1065 1660621 - 1660650 + g 72 -3.4 -4.56597 | gap 1, overlap 1660622 GCGGCATGCACCATC AGCGGCGCGCCGG TCACC TCGGC-CACCGCC TTTTTCAGCGCGACA Pden_1679 1661968 - 1661066 - | xylose isomerase domain-containing protein Pden_1680 1663094 - 1661976 - | oxidoreductase domain-containing protein Pden_1681 1664020 - 1663100 - | periplasmic binding protein/LacI transcriptional regulator TERM 1066 1663171 - 1663226 + g 84 -16.1 -3.4072 | gap 2 TGCGTTCGGGCGTTT CGCCCCCCGCCATGGCGATG--GCGGT CTGG ACCGCGACCTCGCCCTGACGGGTGGCG TTCTGGTAGACGGTG Pden_1682 1665042 - 1664032 - | inner-membrane translocator Pden_1683 1666566 - 1665055 - | ABC transporter related Pden_1684 1667561 - 1666620 - | periplasmic binding protein/LacI transcriptional regulator Pden_1685 1668795 - 1667791 - | regulatory protein, LacI TERM 1067 1668432 - 1668476 + g 85 -16.3 -3.53811 | overlap 1668435 CGTGATGGTCGATGC CGGTCGCCGCCACGGCCTGCA CCT TGCCGGCCATGCCGGCGATGG TTTCGGCGAAATCGG TERM 1068 1668435 - 1668473 + g 82 -18.8 -2.90615 | overlap 1668432 GATGGTCGATGCCGG TCGCCGCCACGGCCTGCA CCT TGCCGGCCATGCCGGCGA TGGTTTCGGCGAAAT Pden_1686 1669575 - 1668901 - | hypothetical protein Pden_1687 1670700 - 1669663 - | AraC family transcriptional regulator TERM 1069 1670431 - 1670410 - G 78 -15.9 -2.97188 | GCAGACCAGCACATA GTCCGAGGC GGGC GCCTCGGAC AGCGGCGCGTCCGGC Pden_1688 1671375 - 1670911 - | hypothetical protein TERM 1070 1671193 - 1671172 - G 74 -13.7 -3.38768 | CCAGACCATCCAGAA GCCGCTGGC CCCG GCCAGCAGC ACCCAAAGCCGGGCC Pden_1689 1672597 - 1671389 - | nitric oxide dioxygenase TERM 1071 1672687 - 1672705 + H 70 -4.6 -4.36914 | opp_overlap 1672687 CCTTGCCGCCAGAAA CATGCA ATCAGGA TGCATG TTTTATCGGAGACCG Pden_1690 1672723 - 1673166 + | BadM/Rrf2 family transcriptional regulator Pden_1691 1674075 - 1673173 - | LysR family transcriptional regulator TERM 1072 1673227 - 1673203 - G 82 -15.7 -3.53012 | opp_overlap 1673203 GTCCCGTTCCCGAAA CGCCCAGTCCT GGA AGGCCTGGGCG TTCTCGGCGAGGTCG TERM 1073 1673203 - 1673227 + g 79 -15.7 -3.29144 | opp_overlap 1673203 GTCCCGTTCCCGAAA CGCCCAGTCCT GGA AGGCCTGGGCG TTCTCGGCGAGGTCG Pden_1692 1674196 - 1675422 + | creatinase TERM 1074 1676423 - 1676441 + G 71 -10.2 -3.72576 | TCTCGACCGAGATGG GCATGGGC AAG GCCCAGGC TTTCCTGGCCACCAG Pden_1693 1675567 - 1676901 + | major facilitator transporter Pden_1694 1677880 - 1676951 - | LysR family transcriptional regulator Pden_1695 1677976 - 1678968 + | inositol phosphatase/fructose-1,6-bisphosphatase Pden_1696 1678991 - 1679863 + | phosphoribulokinase Pden_1697 1679875 - 1681881 + | transketolase Pden_1698 1681881 - 1682960 + | fructose-1,6-bisphosphate aldolase TERM 1075 1684131 - 1684102 - g 71 -2.7 -4.66833 | gap 1, overlap 1684103 1684104 GGGCAACCTGAAAAA GGTGATGCCGGTCG CCT CGGGCGGCATC-CA TGCCGGGCAGATGCA rbcL 1682975 - 1684438 + | ribulose bisophosphate carboxylase Pden_1700 1684450 - 1684839 + | ribulose-bisphosphate carboxylase Pden_1701 1684912 - 1685838 + | ATPase central domain-containing protein TERM 1076 1685940 - 1685955 + T 74 -4.6 -4.58283 | overlap 1685941 TGGAAGGGACCGTTA AGGTCG CTAA CGACCC TTTTTCGACAGGTTG Pden_1702 1687565 - 1686315 - | PimS2 protein TERM 1077 1687410 - 1687383 - G 74 -12.8 -3.57144 | gap 1, overlap 1687384 1687395 GTGGGTATGGGCAAA GCC-GCGCAGCAA CCC TTGCTGCGCCAGC CAGCGATGCAGGCGC TERM 1078 1687709 - 1687719 + H 80 -8.2 -4.36914 | opp_overlap 1687699 1687702 1687703, overlap 1687705 GACAAGAACGCCGCC GCGC CCG GCGC TTTTCTGGACGGCGA Pden_1703 1687776 - 1689314 + | quinohemoprotein amine dehydrogenase, 60 kDa subunit Pden_1704 1689319 - 1690776 + | radical SAM domain-containing protein Pden_1705 1690773 - 1691105 + | hypothetical protein Pden_1706 1691105 - 1692181 + | quinohemoprotein amine dehydrogenase, subunit beta Pden_1707 1692183 - 1692851 + | hypothetical protein Pden_1709 1695449 - 1694469 - | Fis family transcriptional regulator Pden_1708 1692844 - 1694565 + | ABC transporter related Pden_1710 1695772 - 1697175 + | betaine-aldehyde dehydrogenase Pden_1711 1697835 - 1697230 - | hypothetical protein Pden_1712 1699442 - 1697832 - | glucose-methanol-choline oxidoreductase TERM 1079 1698474 - 1698498 + g 70 -4.2 -4.41494 | gap 1, overlap 1698475 TTCCAGCCCGATCGC CGCCTTGC-CC ATCA GGTGCGAGGCC TTTTCGTTCAGCGTC TERM 1080 1698810 - 1698862 + g 72 -5.4 -4.42653 | GATGCGCAGGTTCTG GCGG-TGGCGCACCGGGCGCAGGAAA GCC TTGGCCGCGCTCCA-GCGCCAGCCGC TTTTCTGGGTCACGT Pden_1713 1700472 - 1699474 - | inner-membrane translocator Pden_1714 1701361 - 1700474 - | inner-membrane translocator Pden_1715 1702067 - 1701363 - | ABC transporter related TERM 1081 1701633 - 1701602 - G 76 -7.9 -4.25104 | gap 1, opp_overlap 1701605, overlap 1701606 GCTCGTCCAGCAAAA GGCAGCGCGCCCCG GTGCG CAGGATGCGC-GCC ATGGCCAGCATCTGC Pden_1716 1702840 - 1702064 - | ABC transporter related Pden_1717 1704039 - 1702840 - | ABC branched-chain amino acid transporter, periplasmic binding protein TERM 1082 1703304 - 1703281 - G 71 -10.2 -3.75153 | overlap 1703284 CTCGGCCAAGGTAAA GAGCAGCGCC GCAA GGCGCTGGCC GCCGGCAGTGATGCC Pden_1718 1704227 - 1705144 + | LysR family transcriptional regulator Pden_1719 1706825 - 1705314 - | malonyl-CoA synthase Pden_1720 1708212 - 1706842 - | malonyl-CoA decarboxylase TERM 1083 1707151 - 1707103 - G 82 -15.2 -3.44848 | opp_overlap 1707116, overlap 1707101 GGCGCGCAGGAAATA GGCCGCGG-CGGCAGCCAGCAGCG GCG CGC-GCAGGCTTTCGGCCACGGCC GGGTCCTTGTGCCAG Pden_1721 1709629 - 1708247 - | dicarboxylate carrier MatC domain-containing protein TERM 1084 1708348 - 1708337 - G 78 -5.8 -4.57073 | CAGTTTGCGGAAAAA GACC TGAC GGTC CACCCCGCGCGCATT Pden_1722 1709821 - 1710477 + | GntR family transcriptional regulator TERM 1085 1710557 - 1710543 - f 73 -9.2 -3.9009 | AAGGGATGGGATAAA GGCCCG GGA CAGGCC GATGGGGGTGCCGAT Pden_1723 1710559 - 1711242 + | hypothetical protein Pden_1724 1711267 - 1712628 + | hypothetical protein Pden_1725 1713151 - 1712600 - | hypothetical protein TERM 1086 1712747 - 1712716 - G 88 -12.2 -4.30844 | AGGGCACCAGGAAAA GCTGGTCAGACAGG AACT CCTGCCTGTCCGGC GGCGCGTCGTAGGGG Pden_1726 1713696 - 1713148 - | hypothetical protein Pden_1727 1714220 - 1713693 - | hypothetical protein TERM 1087 1714055 - 1714032 - G 72 -13.8 -3.14132 | CCGCGCGCGCATCAA CAGGCGGGCG GGCT CGCCCTCCTG CCCGGGCGGGACCAG TERM 1088 1715291 - 1715322 + G 71 -10.8 -3.62096 | gap 1, opp_overlap 1715278 1715277, overlap 1715291 AGGCGGCGCCGGTCG CCC-TGCGCCGCGAC ATG GTGGCGGCGGACGGG TTTCGCCTGATCGGA TERM 1089 1715913 - 1715901 - g 75 -10.5 -4.07568 | opp_overlap 1715910 GCTCTTTGCGGAAAA GCGCC GCA GGCGC CGGGCCGCGCGCTTC Pden_1728 1714648 - 1716132 + | CHAD domain-containing protein Pden_1729 1717272 - 1716154 - | alanine dehydrogenase Pden_1730 1717674 - 1718153 + | hypothetical protein TERM 1090 1718796 - 1718820 + G 81 -7.8 -4.65895 | gap 1, opp_overlap 1718788 CAATCCATGGACGCT GGCCATCGGCG CGGG CGC-GCTGGCC TTTTTCCATGCGGCG Pden_1731 1718248 - 1720026 + | sulfate transporter TERM 1091 1720223 - 1720279 + F 76 -13.7 -3.14468 | gap 3, overlap 1720247 CCGCCTCGATCGCCG GCTGGGC-GCGCGCGCAACTG-CGCGGC TAAG GCCGGGGCGGTTGCCCGCACCGCCC-GC TTGGCTATGCTGGAG Pden_1732 1720321 - 1721295 + | putative glutathione S-transferase Pden_1733 1721402 - 1722316 + | iron permease FTR1 TERM 1092 1722357 - 1722387 + G 90 -18.2 -3.46602 | GGCGATCGCGGGCGC GGCCGTGCTGGCCG TCG CGGGCGGCGCGGCC TTCTGGTATGCGACG Pden_1734 1722313 - 1723470 + | hypothetical protein TERM 1093 1724539 - 1724514 - g 75 -9 -4.11216 | gap 1 CGCGCACCCCGAAAA GCGAGCGCAAC CTGAT GCTGCGC-CGC CCCTTCAACTATTCC Pden_1735 1723472 - 1724776 + | Dyp-type peroxidase family protein Pden_1736 1724819 - 1725646 + | hypothetical protein TERM 1094 1725711 - 1725725 + T 72 -2.8 -4.64598 | ATGCGGCCGGAATTT CCGAAT GAA ATTAGG TTTTTCAACTGGTTG Pden_1737 1726992 - 1726093 - | LysR family transcriptional regulator TERM 1095 1726154 - 1726134 - G 81 -9.6 -4.371 | TCCAGGACAGGAAAA CCTGCCGC GCCTT GCGGCGGG GGGCGTCGCGCGGGG TERM 1096 1727045 - 1727034 - H 76 -5.8 -4.48741 | overlap 1727035 GAACTGATTATAAAA CGTC CTTT GACG CCTGCAAAGGTCCGC Pden_1738 1727097 - 1728326 + | creatinase Pden_1739 1728497 - 1729609 + | ABC polyamine/opine transporter, periplasmic substrate-binding protein TERM 1097 1729615 - 1729644 + T 78 -12.8 -3.53012 | overlap 1729616 CGCCAGTTGACAGGC TGGCAGCGGGGG CCGGCT CCCTCGCTGCCC TTTCCGCCGCAGCCC TERM 1098 1729616 - 1729643 + T 81 -16.3 -2.71712 | overlap 1729615 GCCAGTTGACAGGCT GGCAGCGGGGG CCGGCT CCCTCGCTGCC CTTTCCGCCGCAGCC TERM 1099 1729835 - 1729791 - T 100 -21.4 -3.25942 | gap 1 AGGCGGGCAGACGAA GCCTATGGCCGGGCGCGCGGC AGGC GCGGCGCGCCCGGCC-CAGCC TTCCGGCGATCCCGA Pden_1740 1730197 - 1729955 - | hypothetical protein Pden_1741 1730480 - 1730707 + | hypothetical protein Pden_1742 1730709 - 1731158 + | D-tyrosyl-tRNA deacylase Pden_1743 1731341 - 1732780 + | DEAD/DEAH box helicase domain-containing protein TERM 1100 1732833 - 1732802 - f 81 -12.9 -3.60234 | opp_overlap 1732818 CCAGATACGCGCAAA CGTGAGCCGCCGC CCCGTC GCGGCGGCTTGCG ACCCCCTCGCCGTCG Pden_1744 1732864 - 1733442 + | thymidine kinase TERM 1101 1733470 - 1733483 + G 75 -4.5 -4.62336 | gap 1, overlap 1733472 CCGCCCGCGCCTATG GCTGGG TCG CCC-GC TTTTTCCACTGGACT Pden_1745 1733439 - 1734659 + | cytochrome B561 TERM 1102 1734666 - 1734687 + T 86 -12.9 -3.90112 | opp_overlap 1734660 1734659 1734657 CAGCAATAGGCGAAG GGGCGGCCC TGTC GGGCGGCCC TTTCCTTGCCAAACG TERM 1103 1734743 - 1734724 - T 100 -12.1 -4.63527 | opp_overlap 1734724 GCATGACGTGAAAAA GGCCGCC TCGATC GGCGGCC TTTTCCGATGAGTAT TERM 1104 1734724 - 1734743 + T 85 -12.1 -4.15006 | opp_overlap 1734724 GCATGACGTGAAAAA GGCCGCC TCGATC GGCGGCC TTTTCCGATGAGTAT Pden_1746 1735204 - 1734782 - | nucleoside-diphosphate kinase TERM 1105 1735296 - 1735286 - H 72 -8.2 -4.09685 | overlap 1735250 1735287 CGCGACGCTTGAAAA GCCG GCG CGGC ATTGACGCCCGCCGC TERM 1106 1737070 - 1737026 - g 72 -3.5 -4.58395 | gap 1 GCCATGCTGGAAAAA CTGGACGCCATCAT-GGCTG ATCCCG CGACCTATGGCGACGCCCAG AAGGCCGAGGCCTGG Pden_1747 1735334 - 1737181 + | ABC transporter related TERM 1107 1737304 - 1737362 + G 73 -9.6 -3.93288 | gap 3 GATTGCCGCGCTTGC GCTTGTTGCCGCCACCGCCCTGAGCCAGC CCGC GCTGGCGCAGT-CGCTGG-GGC-GCGAGC TTTCGTTCGATGCCG Pden_1748 1737281 - 1738009 + | MltA-interacting MipA family protein Pden_1749 1738074 - 1738433 + | hypothetical protein Pden_1750 1738430 - 1738978 + | hexapaptide repeat-containing transferase Pden_1751 1739554 - 1738985 - | phosphoglycerate mutase Pden_1752 1740405 - 1739545 - | coproporphyrinogen III oxidase TERM 1108 1739898 - 1739864 - G 78 -6.5 -4.55295 | gap 2 TGCGGGACAAAGAAA TACT-CGTCCGC-CCAG GCC CTGAAGCGGTCGTAGTA ATCCGCACCATGCGG Pden_1753 1740461 - 1740901 + | hypothetical protein TERM 1109 1740917 - 1740902 - T 70 -4.6 -4.33203 | overlap 1740914 GAAGAGAAGAAATAA GGGCTC AGTA GACCCC GGGCGCCAGCGGGTC Pden_1754 1741715 - 1740906 - | short-chain dehydrogenase/reductase SDR Pden_1755 1742746 - 1741712 - | methyltransferase small TERM 1110 1742684 - 1742659 - G 88 -15.5 -3.76373 | gap 1, opp_overlap 1742647 GGTCGAATACGGAAA GATCGGTCGCGG CAC CCGCG-CCGATC AGCAGCATGCGTCCT Pden_1756 1743067 - 1742750 - | ATP-dependent Clp protease adaptor protein ClpS TERM 1111 1744268 - 1744298 + G 78 -13.3 -3.53563 | gap 1 CCGGTGGCGCGCGCC TCGACCGCCGCGGT GGTG ACCCCGGCGG-CGA TTTCGGCCGCGGTCT TERM 1112 1744537 - 1744589 + G 78 -8.2 -4.26903 | gap 1 CCCCAAGCCCTCGCC GCGAGG-CGATCGGTCGGCCGAGCT TTCC ACCCCGGCCGCGGGCTCGCCCTCGC TTTTCGTGCAATCGA Pden_1757 1743278 - 1744984 + | Serine-type D-Ala-D-Ala carboxypeptidase Pden_1758 1745638 - 1745177 - | AsnC family transcriptional regulator Pden_1759 1746090 - 1745635 - | AsnC family transcriptional regulator Pden_1760 1746218 - 1747240 + | ketol-acid reductoisomerase TERM 1113 1747274 - 1747255 - f 79 -10.6 -4.128 | opp_overlap 1747256, overlap 1747256 AGCGCGACAGAGAAA GGCCCCGC GAGA GCGGGGCT TTTTTCGTTAAGGGA TERM 1114 1747273 - 1747256 - f 76 -14.1 -3.07198 | opp_overlap 1747256, overlap 1747255 GCGCGACAGAGAAAG GCCCCGC GAGA GCGGGGC TTTTTTCGTTAAGGG TERM 1115 1747256 - 1747273 + F 100 -14.1 -5.26875 | opp_overlap 1747255 1747256 GCGCGACAGAGAAAG GCCCCGC GAGA GCGGGGC TTTTTTCGTTAAGGG Pden_1761 1747542 - 1748414 + | hypothetical protein dnaE 1751939 - 1748469 - | DNA polymerase III subunit alpha TERM 1116 1748917 - 1748907 - G 70 -8.2 -3.89215 | overlap 1748901 1748908 GCCGACAAAGGCAAA GCGG GTG CCGC GCGCAGATTTCTTTT TERM 1117 1752027 - 1752014 - H 71 -4.5 -4.57341 | gap 1, overlap 1752018 AATCTTGCGCAAAAA GCAGCG AGG CGC-GC GACAGTGAGCAATGT TERM 1118 1752761 - 1752800 + G 82 -15.6 -3.53012 | CTGGTGGACCGATCC GGCCGCAAGCCCGCCGCA CCCG TGCTGCAGGTTCGCGGCC TTTCCACGGCGGGCG Pden_1763 1752032 - 1753546 + | ABC transporter related TERM 1119 1754224 - 1754251 + G 78 -14 -3.53811 | GCTTCCACATCCGCA CCGCCGGCGCGG CCCC CCGCGCCGCCCG TTTCGCCGGCGTGCG Pden_1764 1753533 - 1754603 + | inner-membrane translocator Pden_1765 1754600 - 1755490 + | inner-membrane translocator Pden_1766 1755514 - 1756590 + | basic membrane lipoprotein TERM 1120 1756628 - 1756611 - T 84 -14.1 -3.60792 | GGCGCAACCGGCAAA CCGGGGC CTTG GCCCCGG TTCACCACGCGGAAA Pden_1767 1757119 - 1756646 - | Ferritin, Dps family protein TERM 1121 1757243 - 1757214 - R 100 -20.1 -5.30616 | opp_overlap 1757198, overlap 1757238 GCAGCCAAAGAAAAA GGGCGGCGCTTTC CACC GAAAGCACCGCCC CGAAAGCTGCTCAGA acpP 1757498 - 1757265 - | acyl carrier protein Pden_1769 1758372 - 1757635 - | 3-oxoacyl-(acyl-carrier-protein) reductase Pden_1770 1759362 - 1758436 - | malonyl CoA-acyl carrier protein transacylase Pden_1771 1760772 - 1759435 - | integral membrane sensor signal transduction histidine kinase Pden_1772 1760831 - 1761697 + | beta-lactamase domain-containing protein TERM 1122 1761926 - 1761951 + T 71 -7.6 -4.19238 | opp_overlap 1761913, overlap 1761920 1761916 AAGGCGGCCCGTCCG GCTCGAACGT CCCTTA ATGTTCGGGC TTTTCCCATTCCGCC TERM 1123 1762091 - 1762063 - T 73 -11.8 -3.3785 | gap 1 CGAAGCCATGGACAA CAGCGGC-TCTCG ATCA CGAAACGCCGCTG GATCTGCCCTGCCCC Pden_1773 1763218 - 1762154 - | siderophore-interacting protein Pden_1774 1764313 - 1763222 - | periplasmic binding protein Pden_1775 1766480 - 1764315 - | TonB-dependent siderophore receptor TERM 1124 1765754 - 1765799 + g 90 -20.5 -3.12668 | gap 1 GTTCGGTCGCATCGC CG-GGCCGCCAGGTCAGGCTGG GCG CCAGCATGAACTGGCGGTCGCG TTCGGTATCGACCTG Pden_1776 1766649 - 1767638 + | helix-turn-helix domain-containing protein TERM 1125 1769421 - 1769436 + G 77 -11.8 -3.86015 | GATGACCGTGGCGCT GGCGGC CTCG GCCGCC TTTCTCACGCCGGTC Pden_1777 1767766 - 1769595 + | citrate transporter Pden_1778 1771135 - 1769921 - | Bcr/CflA subfamily drug resistance transporter TERM 1126 1770422 - 1770400 - G 81 -9.8 -4.37092 | AGGTGTCCGAGAAAA GCTGCTGGGC CGA ACTCAGCAGC GCGAACATCTGCCCG TERM 1127 1771198 - 1771233 + H 79 -14.6 -2.9914 | gap 1 GTTCAAGGCCCCGAT GCCCGGACTGCCGGTTG CGC CCGCCGGCCG-CCGGGC TATATCTGGCGCATG Pden_1779 1771246 - 1771668 + | hypothetical protein TERM 1128 1773190 - 1773136 - g 77 -15.5 -3.14132 | gap 2, overlap 1773105 1773104 GTCGCCCCCGAGGAA CGCCAGGCCGCCGCGCCGGCGGCCGCC GAA GGGGGC-GCCGCCCCGGATGCC-GGCG AGCCCACGCCCGAAG Pden_1780 1772014 - 1773369 + | RND family efflux transporter MFP subunit Pden_1781 1773407 - 1775482 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein Pden_1782 1775454 - 1776539 + | cation efflux transporter TERM 1129 1776563 - 1776593 + F 95 -16.8 -3.9941 | opp_overlap 1776554 GCAAGACAGCCTTGG GGGCCGGGATCTGC GCT GCGCGTCCCGGCCC TTTCCTTATGGCGCG TERM 1130 1777763 - 1777803 + G 74 -12.5 -3.61764 | gap 1, overlap 1777757 CACGCTGGACTGCCC GCCCGACCTGCCCGAGCC GGGCGA GGC-CGGGCGGATCGCGC TTTACCGCTTCGTGC Pden_1783 1776681 - 1778087 + | integral membrane sensor signal transduction histidine kinase Pden_1784 1778084 - 1778758 + | two component LuxR family transcriptional regulator Pden_1785 1778762 - 1780048 + | helix-turn-helix domain-containing protein Pden_1786 1780107 - 1780469 + | response regulator receiver protein Pden_1787 1780478 - 1780720 + | hypothetical protein TERM 1131 1780780 - 1780827 + G 70 -15.4 -2.69977 | gap 1, overlap 1780777 TGCTGGCCCATGCCG CCGACCGGGCCG-CCGCCGCCGG CCG CTGGCGCTGGATGGACCGGCCGG TGATCTATACGCTGT Pden_1788 1780710 - 1783367 + | integral membrane sensor signal transduction histidine kinase TERM 1132 1783651 - 1783640 - g 78 -5.8 -4.56597 | opp_overlap 1783620 1783642, overlap 1783642 1783643 CGCGCGGCCGAAAAA CAGG CCGG CCTG CCGGTCTTTGTCGAA TERM 1133 1783642 - 1783657 + G 70 -8.2 -3.86015 | opp_overlap 1783640 1783642 1783643, overlap 1783620 CGCGGCCGAAAAACA GGCCGG CCTG CCGGTC TTTGTCGAAAAGGTC Pden_1789 1783427 - 1784605 + | surface presentation of antigens (SPOA) protein infA 1784790 - 1785008 + | translation initiation factor IF-1 Pden_1791 1785037 - 1785678 + | maf protein Pden_1792 1785675 - 1786736 + | ribonuclease Pden_1793 1786733 - 1786882 + | hypothetical protein Pden_1794 1787453 - 1787121 - | hypothetical protein Pden_1795 1788787 - 1787522 - | Allergen V5/Tpx-1 family protein Pden_1796 1789577 - 1789095 - | GCN5-related N-acetyltransferase Pden_1797 1789856 - 1790971 + | sulfate ABC transporter, ATPase subunit TERM 1134 1791739 - 1791729 - g 75 -8.2 -4.19577 | opp_overlap 1791732, overlap 1791718 GAATGCCGAAAAGAA CGGC TCG GCCG AAGTTTCGACCGAAT Pden_1798 1790968 - 1791966 + | sulfate ABC transporter, periplasmic sulfate-binding protein Pden_1799 1791963 - 1792808 + | sulfate ABC transporter, inner membrane subunit CysT Pden_1800 1792805 - 1793632 + | sulfate ABC transporter, inner membrane subunit CysW TERM 1135 1793984 - 1793955 - g 72 -6.3 -4.25658 | gap 1, overlap 1793956 ATCCGAGGAAAAGAA CGCCGC-CCGCGTC TTC GACCTGGCGCGGCA GGACGTGGCCGGCTT Pden_1801 1793695 - 1794420 + | heat shock protein DnaJ domain-containing protein Pden_1802 1794477 - 1794962 + | hypothetical protein Pden_1803 1796176 - 1794959 - | glycosyl transferase, group 1 TERM 1136 1795339 - 1795367 + g 70 -3.7 -4.4078 | opp_overlap 1795323, overlap 1795340 GGACACGCGACAGGT CCAGTTGGCCG TCGAGTT CGGCCAGCAGC TTTTCCTTCCAGCCG Pden_1804 1797789 - 1796176 - | ABC transporter related TERM 1137 1796235 - 1796215 - G 78 -10.4 -4.18934 | opp_overlap 1796233 TATTACCGTAAGAAA CGCCGCCT CGATC AGACGGCG AGTGTAGTCGCTTTG Pden_1805 1798892 - 1797786 - | binding-protein-dependent transport systems inner membrane component Pden_1806 1800031 - 1798892 - | binding-protein-dependent transport systems inner membrane component TERM 1138 1799081 - 1799069 - G 73 -7.7 -4.18018 | overlap 1799071 CCCGTCCAGCGAAAA GATCG TCT CGATC AGGATCGACGAGCCG TERM 1139 1799376 - 1799344 - G 73 -12 -3.53444 | opp_overlap 1799348 TGACCTTGCCCCAAA GGCTCAGGTCGGAC CAGTT GTCCGAGGTGAGCC CGCGCAGCGGAAAGA TERM 1140 1799689 - 1799705 + g 79 -7.9 -4.4078 | opp_overlap 1799688 1799689, overlap 1799691 GCATGATCAGGAAAC GTTCGGC CGC GCCGATC TTTTCCTTGGCGCAG Pden_1807 1802072 - 1800075 - | extracellular solute-binding protein TERM 1141 1802100 - 1802080 - R 100 -16.1 -4.8622 | opp_overlap 1802078, overlap 1802096 CGCGGCAAGCAAAAA GGGCGCCCC CAA GGGACGCCC CATCCTTGCGCGGCA Pden_1808 1802658 - 1802128 - | cytochrome c, class I TERM 1142 1802769 - 1802755 - H 70 -2.7 -4.61566 | overlap 1802756 1802759 TCGCAAAGCACAAAA CGGAC GTAGA GGCCG CCCCGGCACAGGGCA Pden_1809 1802822 - 1803709 + | prephenate dehydratase Pden_1810 1804210 - 1803749 - | hypothetical protein TERM 1143 1805268 - 1805284 + G 71 -11.5 -3.64703 | TGCCCACGGACGACG GCTGGCG CAT CGCCGGC TTTGCCTGCCGCGCC Pden_1811 1804328 - 1806226 + | 5'-nucleotidase domain-containing protein TERM 1144 1807273 - 1807249 - g 76 -14.2 -3.53091 | ATCTCGCGGCCGAAA GCCGCGGCGC CGGGC GCGCCGAGGC CCTGACCCGCGCGGT Pden_1812 1806435 - 1807340 + | ribokinase-like domain-containing protein Pden_1813 1807328 - 1808242 + | indigoidine synthase A family protein Pden_1814 1809294 - 1808239 - | patatin TERM 1145 1808864 - 1808839 - G 79 -5.3 -4.72272 | overlap 1808841 CGCGGTGACGAAAAA GGCCGGCCC CTCCTCGC GGCCCAGCC GGGGATGCGGCATCT Pden_1815 1810681 - 1809473 - | peptide chain release factor 2 TERM 1146 1810168 - 1810208 + g 70 -12.4 -3.25823 | opp_overlap 1810156 1810154, overlap 1810159 ACATCCGCGCCAGCA TGCTGGCCCAGTCGGCGC TTTCC GTGCCGCCGGCGCCGGCA TTGATCTCAAGGAAG Pden_1816 1813226 - 1810689 - | 1A family penicillin-binding protein TERM 1147 1810715 - 1810728 + g 72 -3.7 -4.59773 | opp_overlap 1810695, overlap 1810716 CGCCCGAGGACAGGG TGCCG AAAT CGGCC TTTTTCGGGATCACC TERM 1148 1812367 - 1812340 - G 71 -11.2 -3.57144 | overlap 1812341 1812355 GCCCGGATCGCCAAA CCGCCGCCGAAG AATT CCTCGGCGCCGA ACTGCGCCGAAAGCT Pden_1817 1814532 - 1813297 - | N-acetylmuramoyl-L-alanine amidase TERM 1149 1814313 - 1814293 - G 75 -10.5 -4.07687 | overlap 1814310 ATCGGCGCCCGAAAA GTCGATCTC GCG GAAATCGAC CACCAGTCGCGGCGG Pden_1818 1815665 - 1814529 - | aminotransferase, class I and II Pden_1819 1815801 - 1816553 + | DSBA oxidoreductase TERM 1150 1816649 - 1816603 - T 70 -11.6 -3.31792 | gap 1, opp_overlap 1816617, overlap 1816610 TGAGTATTTGCAGAA CGAAGAAGCAGCAGGGGCGGC GCTTGG GCCGCCCTTTC-GCTTATTCG GCAGCGGCGGATTGC TERM 1151 1816617 - 1816636 + T 81 -12.1 -3.85389 | opp_overlap 1816610 1816603 ACGAAGAAGCAGCAG GGGCGGC GCTTGG GCCGCCC TTTCGCTTATTCGGC ispG 1817767 - 1816643 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Pden_1821 1819114 - 1817894 - | hypothetical protein TERM 1152 1819069 - 1819050 - G 71 -11.4 -3.56092 | gap 1, overlap 1819051 TCAGGATCGTCGAAA CCGGGCGGC AAT GCCGCC-GG CTCCTCATGGCCATT Pden_1822 1820498 - 1819224 - | 5-aminolevulinate synthase Pden_1823 1820623 - 1822008 + | hypothetical protein Pden_1824 1822158 - 1822733 + | hypothetical protein TERM 1153 1822848 - 1822831 - T 100 -14.1 -4.371 | opp_overlap 1822832 GGCATGACATGAAAA GGGCGCC CGAA GGCGCCC GATCATCGCGACTGC Pden_1825 1823380 - 1822871 - | CarD family transcriptional regulator TERM 1154 1823227 - 1823184 - G 74 -13.8 -3.34398 | opp_overlap 1823183 1823182 1823181 1823201, overlap 1823182 TCGGGGGTCGAAAGA CCGCGCATGCCGATCTCG GTCGCCCG CGCGGTCGGCACGCGCAG GGTCATCTTGTCCTT TERM 1155 1823452 - 1823420 - R 100 -14.1 -4.52589 | CCGCGCGACACAAAA GCCCCCAAGGCGGGA CGA TCCCCCCTTACGGGC CACATTGTTGTTCTT TERM 1156 1823772 - 1823759 - R 71 -4.5 -4.54047 | overlap 1823770 TGATCCCAGACAAAA GCACC ATAT GATGC GCGATCAGCACAGTC Pden_1826 1824172 - 1823834 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Pden_1827 1824604 - 1824335 - | RNA-binding S4 domain-containing protein Pden_1828 1827528 - 1824601 - | helicase domain-containing protein TERM 1157 1826483 - 1826454 - G 72 -5.6 -4.4195 | opp_overlap 1826460, overlap 1826455 AGACATCCCACAAAA GCCGCACGTCGC GGGGGT GCGACATGCTGT CGCGGATCTCGGGCA Pden_1829 1828267 - 1827530 - | TPR repeat-containing protein TERM 1158 1827562 - 1827584 + g 77 -14.8 -3.17051 | overlap 1827560 GCAATTTCTGTTCCA GGCGCCGGAC GGC GTCCTGCGCC TCTTGCTGGTGGGGG Pden_1830 1828317 - 1828601 + | sterol-binding domain-containing protein Pden_1831 1828605 - 1829549 + | alpha/beta hydrolase fold TERM 1159 1830319 - 1830369 + G 84 -16.9 -3.53224 | gap 2 CTGAACCTGCTGACG GACCACGACC-GCGC-CCGGCGC GAGGCCG GCGCCCGTGCGCTGGTCGAGGTC TTTGGCAAGAACGTC TERM 1160 1830438 - 1830426 - g 72 -4.8 -4.4078 | GCTGGCCAAGGAAAA GTCC ATCGA GGAC AAGTGGCGCAAGATG TERM 1161 1831037 - 1831019 - g 70 -4.4 -4.44245 | overlap 1831020 1831021 1831023 AGACCACCGACAAAA CCCAGCGC AAG GCGCTGCT GGCCGGCAAGGTCGA Pden_1832 1829638 - 1831500 + | pepF/M3 family oligoendopeptidase TERM 1162 1831607 - 1831623 + F 76 -9.3 -4.18018 | overlap 1831618 ATTCCCCCTTCTCCT CCGCCCC GTC GGGGCAG TTTTCCGTCGCCCGG Pden_1833 1831685 - 1832866 + | peptidase M19, renal dipeptidase TERM 1163 1833185 - 1833163 - g 73 -12.6 -3.40597 | overlap 1833161 TCTGGCACGCAAATA CGGCCAGCCC TTC GGGCCCGCCG ATGCCGTCGAGGACG Pden_1834 1832903 - 1833562 + | glutathione S-transferase domain-containing protein Pden_1835 1834747 - 1833725 - | hypothetical protein TERM 1164 1835511 - 1835479 - g 91 -14.7 -3.85698 | opp_overlap 1835472 GGCCCGGTCGAGAAA GTCGGCGCCGCCCCG AAC CGGCGCGGCACCACC GTCACCTTCCATGCC TERM 1165 1836238 - 1836228 - g 76 -2.4 -4.7254 | overlap 1836215 1836230 ATCGGCGACGAAAAA GCTG CGC CTGC CGGGCAAGCTGGTCG TERM 1166 1836943 - 1836912 - g 73 -13 -3.4252 | GTTCATCCAGGAGAA CGCCCAGTTCGCCG ATGC CGAGGAACTGGACG TGTGACCCTGGCCGC Pden_1836 1834978 - 1836948 + | DNA topoisomerase IV subunit B Pden_1837 1836945 - 1837280 + | hypothetical protein Pden_1838 1837866 - 1837363 - | phosphoesterase, PA-phosphatase related TERM 1167 1837598 - 1837588 - G 71 -2.4 -4.56597 | CGCCGCCCCGAAAAA CGCC GCT GCCG TATGGCCCGAGGGGA Pden_1839 1838525 - 1837863 - | ABC transporter related Pden_1840 1839819 - 1838518 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 1168 1838833 - 1838809 - G 77 -3.6 -4.8048 | gap 2, overlap 1838812 GCCGCAGAGGAAAAA GACCCGCAGGAC GGA GCCCT-C-GGTC AGCCCCATGGTGCGC Pden_1841 1840057 - 1839899 - | cytochrome oxidase maturation protein, cbb3-type Pden_1842 1842265 - 1840067 - | heavy metal translocating P-type ATPase TERM 1169 1841181 - 1841167 - G 73 -7 -4.183 | overlap 1841156 1841168 CCAACGGCGAATAAA GCCGCG AGG CGCGGT CGGCGAGGCCGGTAT TERM 1170 1841229 - 1841199 - G 70 -12.6 -3.29511 | gap 1 GCGAGGCCGGTATAA TGGCCGCGCGCCG ATTCCG CGGCG-GCGACCA GCGCGGTCAGCCGCG Pden_1843 1842731 - 1842267 - | FixH family protein Pden_1844 1844188 - 1842731 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 1171 1844358 - 1844332 - R 100 -10.1 -5.60993 | gap 1 CCCGGCACAAAAAAA CGCGCCACCGGC TTGC GCCGGTT-CGCG TGCCTGGCATTTGAT Pden_1845 1845513 - 1844464 - | cytochrome c oxidase, cbb3-type, subunit III TERM 1172 1845532 - 1845545 + r 73 -9.5 -3.889 | TCGACCTCCTTCTCG CCCGC GGAT GCGGG TTTCGTCTCGTTACG Pden_1846 1845701 - 1845513 - | Cbb3-type cytochrome oxidase component Pden_1847 1846435 - 1845710 - | cytochrome c oxidase, cbb3-type, subunit II Pden_1848 1848064 - 1846445 - | cytochrome c oxidase, cbb3-type, subunit I TERM 1173 1848546 - 1848536 - g 72 -6.8 -4.26076 | overlap 1848537 CGAGCTGGAGGAAAA GGTC CGC GACC GGCTCGATCCCGAAG Pden_1849 1848315 - 1849148 + | UspA domain-containing protein TERM 1174 1849197 - 1849166 - T 91 -16.7 -3.53012 | gap 1, opp_overlap 1849166, overlap 1849171 TGCCGTCCTGGCAAA GCAA-ACCCCCGGG CAAGT CCCGGGGGTCTTGC TTTGGGCCGCCGGGC TERM 1175 1849166 - 1849197 + T 91 -16.7 -3.53012 | gap 1, opp_overlap 1849166 1849171 TGCCGTCCTGGCAAA GCAA-ACCCCCGGG CAAGT CCCGGGGGTCTTGC TTTGGGCCGCCGGGC TERM 1176 1849191 - 1849171 - T 95 -15.4 -4.05788 | opp_overlap 1849166, overlap 1849166 TCCTGGCAAAGCAAA CCCCCGGG CAAGT CCCGGGGG TCTTGCTTTGGGCCG Pden_1850 1849871 - 1849236 - | CRP/FNR family transcriptional regulator Pden_1851 1850034 - 1851389 + | coproporphyrinogen III oxidase Pden_1852 1852327 - 1851392 - | cation diffusion facilitator family transporter Pden_1853 1855221 - 1852399 - | DNA polymerase I Pden_1854 1855593 - 1855405 - | hypothetical protein Pden_1855 1855663 - 1856622 + | ABC transporter related Pden_1856 1856984 - 1856610 - | histidine triad (HIT) protein Pden_1857 1858584 - 1856995 - | glycosyl transferase family protein TERM 1177 1857646 - 1857613 - G 70 -12.4 -3.28712 | gap 1 CTCGGCCTCCCAGAA GCGCTGGCCGAAGCG CCGCC CGATCCGGCC-GCGC GCGGTGAGGAAGCGA TERM 1178 1858692 - 1858709 + H 88 -2.5 -5.24129 | opp_overlap 1858680 1858679, overlap 1858694 AACCCGGTCGCAGAC CCGCCCC GGCC GGTGCAG TTTTTTGTGAAGGGA Pden_1858 1858734 - 1859552 + | hypothetical protein TERM 1179 1859593 - 1859610 + F 78 -14.1 -3.18467 | opp_overlap 1859578, overlap 1859580 CCCCCGCCGGAGGCA GCGGCGC GGAT GCGCCGC TTCCCTTGCAGATTT rpmF 1859826 - 1860032 + | 50S ribosomal protein L32 Pden_1860 1860050 - 1861162 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 1180 1862004 - 1861971 - g 73 -8.1 -4.18018 | gap 1, opp_overlap 1861974 CCTGCCGATGGAAAA GGTGGTGCTGACGGTC GCC GACCA-CGGCAACACC TCGGCCGCCTCGATT Pden_1861 1861162 - 1862133 + | 3-oxoacyl-(acyl-carrier-protein) synthase III Pden_1862 1862417 - 1862142 - | hypothetical protein Pden_1863 1862630 - 1862938 + | integration host factor, alpha subunit Pden_1864 1862938 - 1863543 + | MerR family transcriptional regulator TERM 1181 1863750 - 1863785 + F 100 -19.8 -4.07687 | opp_overlap 1863755, overlap 1863755 1863784 1863784 CGGCCCGACCATTCC GAAAACGCCCATCCCC GTCC GGGGGTGGGCGTTTCC TTTTGCCGAAAGGGT TERM 1182 1863780 - 1863755 - f 95 -16.1 -4.12188 | opp_overlap 1863755 1863750 CGACCATTCCGAAAA CGCCCATCCCC GTCC GGGGGTGGGCG TTTCCTTTTGCCGAA TERM 1183 1863755 - 1863780 + F 100 -18.3 -4.19735 | opp_overlap 1863755, overlap 1863750 CGACCATTCCGAAAA CGCCCATCCCC GTCC GGGGGTGGGCG TTTCCTTTTGCCGAA Pden_1865 1863788 - 1864873 + | 2'-deoxycytidine 5'-triphosphate deaminase Pden_1866 1865785 - 1865120 - | putative transcriptional regulator TERM 1184 1865712 - 1865701 - G 71 -2.2 -4.65916 | CCGAGGCGAACAAAA TGGC TTCG ACCA TGCGCTCCTGCTCGG Pden_1867 1866636 - 1865782 - | chromosome segregation and condensation protein ScpA Pden_1868 1867668 - 1866682 - | Beta-N-acetylhexosaminidase Pden_1869 1868847 - 1867678 - | sporulation domain-containing protein Pden_1870 1870661 - 1868916 - | arginyl-tRNA synthetase TERM 1185 1869124 - 1869111 - G 81 -3.8 -4.85129 | overlap 1869116 ATCATAGAGGAAAAA CGCA ATCCGA TGCG GCTCATGCGCGCGGG TERM 1186 1870445 - 1870479 + g 86 -9.9 -4.56597 | gap 1, overlap 1870447 GCGGATCGGCGGCCA GGCGCGCGGCCAGCGC CTCG GCGATG-TCGCGCGGC TTTTTCCCGGCGGGC TERM 1187 1870881 - 1870900 + H 74 -10.6 -3.72576 | opp_overlap 1870877 1870880, overlap 1870882 GATGGACGCAAGCAC GGCGCGGG CTGG CCCGCGCA TTTGATACGAAAGCC TERM 1188 1870882 - 1870899 + H 73 -14.1 -2.83403 | opp_overlap 1870877 1870880, overlap 1870881 ATGGACGCAAGCACG GCGCGGG CTGG CCCGCGC ATTTGATACGAAAGC TERM 1189 1871043 - 1870990 - H 75 -15.3 -2.78463 | AGGCGGGCTATGAGA CGCCCACGCCGATCCAG-GCCGGGG CGATTC CCCCGGCGCTGGAAGGGCGCGA-CG TGCTGGGCATCGCCC TERM 1190 1872244 - 1872228 - H 77 -11.5 -3.75153 | overlap 1872229 CGCGCCGAAGCGAAA CCGGCCG AGC CGGCCGA GCGCAGGCATGACCG TERM 1191 1874937 - 1874925 - g 76 -7.7 -4.32034 | CTATGAGCAGGAAAA GTTCC ACT GGAAC ACCTGCCATGTCCAC TERM 1192 1875415 - 1875444 + G 83 -12 -4.07687 | ATCGTCGACACCTAT GGCGGCGCGGCC CCGCAT GGCGGCGGCGCC TTTTCGGGCAAGGAT Pden_1873 1874653 - 1875819 + | S-adenosylmethionine synthetase TERM 1193 1875883 - 1875904 + T 93 -11.5 -4.65895 | opp_overlap 1875882 1875877 1875883 TTCGAAACAGAGAAG GGGCCGCGG GTTT TCGCGGCTC TTTTTCCATGCGGGA Pden_1874 1876554 - 1875928 - | heat shock protein DnaJ domain-containing protein TERM 1194 1876481 - 1876500 + g 85 -11.4 -4.30719 | gap 1 GCGCCGGACATGCCG CGCCG-GCC CTT GGCCCGGCG TTTCTTGTCCGAGGC TERM 1195 1876555 - 1876585 + H 71 -9.7 -3.695 | GTCGCTGTTGCTCAT CTGCCTGCCTTGT CCTGA ACGGGACAGGCAG TTTAGGCTATTTCGC Pden_1875 1876624 - 1876875 + | BolA family protein glpX 1876957 - 1877922 + | fructose 1,6-bisphosphatase II TERM 1196 1877949 - 1877982 + F 100 -18.2 -4.46112 | opp_overlap 1877949 1877946 CGGGCTTGAACAGCA GGCGGTCATGGGGG ATGAAG CCCACATGACCGCC TTTCTTTCCGTAGAA TERM 1197 1877982 - 1877949 - f 87 -18.2 -2.73875 | opp_overlap 1877949, overlap 1877946 CGGGCTTGAACAGCA GGCGGTCATGGGGG ATGAAG CCCACATGACCGCC TTTCTTTCCGTAGAA Pden_1877 1877974 - 1879716 + | single-stranded-DNA-specific exonuclease RecJ Pden_1878 1880002 - 1880325 + | hypothetical protein carB 1883687 - 1880355 - | carbamoyl phosphate synthase large subunit TERM 1198 1883795 - 1883782 - R 71 -4.5 -4.56597 | opp_overlap 1883793 CCGCCCGGCCAAAAA TCCGC CAAA GCGAA AAGGGGCGGCGCCGA TERM 1199 1883793 - 1883829 + r 74 -10.7 -3.81146 | opp_overlap 1883782 1883798 AAAATCCGCCAAAGC GAAAAGGGGCGGCGC CGATCAT GCGCCGCCCCTGCCC TTCTTCGTTCCCCAA TERM 1200 1883824 - 1883798 - R 100 -18 -4.35524 | opp_overlap 1883793 CCGCCAAAGCGAAAA GGGGCGGCGC CGATCAT GCGCCGCCCC TGCCCTTCTTCGTTC Pden_1880 1884402 - 1883878 - | hypothetical protein Pden_1881 1885078 - 1884716 - | hypothetical protein Pden_1882 1885717 - 1885082 - | hypothetical protein TERM 1201 1885820 - 1885794 - H 90 -15.9 -3.46602 | gap 1, opp_overlap 1885814, overlap 1885797 TCGGCCATATGACAA GGA-CGGGCGGG ACTT CCCGCCCGATCC GCGCCGCCGCATCGG TERM 1202 1885816 - 1885797 - H 84 -16.4 -2.88069 | opp_overlap 1885814, overlap 1885794 GCCATATGACAAGGA CGGGCGGG ACTT CCCGCCCG ATCCGCGCCGCCGCA TERM 1203 1885826 - 1885836 + H 72 -8.2 -4.07568 | overlap 1885814 CGCCCGATCCGCGCC GCCG CAT CGGC TTTTCAGCCGCCGGA hisB 1885895 - 1886482 + | imidazoleglycerol-phosphate dehydratase hisH 1886482 - 1887111 + | imidazole glycerol phosphate synthase subunit HisH Pden_1885 1887597 - 1887211 - | hypothetical protein TERM 1204 1887364 - 1887406 + g 70 -12.9 -3.32647 | opp_overlap 1887350, overlap 1887360 1887350 1887360 CTTGCCGCCGCCATC GTCG-GTCATGCCGGCGACGA TGT TC-TTGCCGGCATGAGGCGAC TTGATCTCCTTGCCC TERM 1205 1887683 - 1887701 + H 74 -11.6 -3.59979 | CTGACGTGAGGTCGC GGCCGCGG GAC CCGGGGCC TTTCGGATCGGCGCC Pden_1886 1887757 - 1888473 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 1206 1888589 - 1888644 + G 70 -8.9 -3.87815 | gap 3, overlap 1888591 ACCTTCGCGATGCCG GC-GATC-CGGTCGAGGCGGCGCGCGCC TAT GACGCG-GCCGGCGCGGACGAGATCTGC TTTCTCGACATCCAC Pden_1887 1888501 - 1889262 + | imidazole glycerol phosphate synthase subunit HisF hisE 1889259 - 1889585 + | phosphoribosyl-ATP pyrophosphatase Pden_1889 1889590 - 1890090 + | MgtC/SapB transporter Pden_1890 1891292 - 1890087 - | ribonuclease D TERM 1207 1890980 - 1890969 - G 72 -4.4 -4.56597 | GGCGTCGTGGAAAAA GATC TCCA GATC CTGCCGCGCGGCGTG Pden_1891 1892523 - 1891381 - | queuine tRNA-ribosyltransferase TERM 1208 1891616 - 1891639 + g 70 -8.8 -3.82084 | TCCGCGTCCAGCGGG CGCGGGTCGT CGGC ATGACGCGCG TTCTTGATGTTGACC Pden_1892 1893310 - 1892555 - | putative hemolysin Pden_1893 1893409 - 1893801 + | methionine-R-sulfoxide reductase TERM 1209 1893828 - 1893811 - T 100 -14.1 -4.2349 | GGCTGACATGGAAAA GGGCGCC GATG GGCGCCC CGTTCCCGTCAATCC Pden_1894 1894292 - 1893837 - | hypothetical protein Pden_1895 1894407 - 1894934 + | hypothetical protein Pden_1896 1896588 - 1894936 - | choline dehydrogenase Pden_1897 1898115 - 1896670 - | betaine aldehyde dehydrogenase Pden_1898 1898681 - 1898112 - | transcriptional regulator BetI TERM 1210 1898629 - 1898648 + g 82 -11.4 -4.15453 | CCCACTGTGGCAATC GCGGCGTT GATC AGCGCCGC TTTTCGGATAGGTTC Pden_1899 1898812 - 1899765 + | substrate-binding region of ABC-type glycine betaine transport system TERM 1211 1899766 - 1899803 + F 71 -11.9 -3.21218 | gap 1, opp_overlap 1899766, overlap 1899794 GTGCTGTCCAAGTGA GGTCCGGCGGGCGGGATG CAG CCTCCTGCCCGC-GCGCC TTGCTCATCGGGCAT TERM 1212 1899805 - 1899817 + F 73 -5.5 -4.35116 | overlap 1899794 CCTGCCCGCGCGCCT TGCTC ATC GGGCA TTTTCCTCTACCCTA Pden_1900 1899930 - 1900781 + | binding-protein-dependent transport systems inner membrane component Pden_1901 1900774 - 1901832 + | ABC transporter related Pden_1902 1902780 - 1901854 - | hypothetical protein TERM 1213 1902564 - 1902546 - G 72 -5.8 -4.30576 | overlap 1902548 CGCGCAGCACGAAAA GCGCCCAG ATG CGCGGCGC GAATCCCCGCCGCAA Pden_1903 1903407 - 1902808 - | lysine exporter protein LysE/YggA TERM 1214 1903322 - 1903288 - G 78 -9.9 -4.10657 | gap 1, opp_overlap 1903287 1903309 1903311 CGAGATCGCGCAAAA GGCGCAGGTCGCCAGC ACAT GCCGGCG-CATGAGCC CCTGTTTCAGCACGA TERM 1215 1904125 - 1904091 - g 72 -8.5 -4.07568 | gap 1 CCGCTGGGCGCAAAA GGCCACC-GGCAGGCG CCTG CACCTGCCCGGCCACC TGATCCCGGCCTCGG TERM 1216 1904355 - 1904333 - g 100 -13.4 -5.18726 | CCGCCATAAGAAAAA GGGCCGCAGC AGA ACTGCGACCC TGAACTTTCCGTTTC Pden_1904 1903489 - 1904358 + | chromosome replication initiation inhibitor protein Pden_1905 1905138 - 1904398 - | hypothetical protein Pden_1906 1905478 - 1905203 - | hypothetical protein Pden_1907 1905674 - 1905465 - | hypothetical protein TERM 1217 1905597 - 1905642 + g 91 -14.7 -3.9279 | gap 1, overlap 1905586 1905602 ATTCTCGTCGCCCTG CTTGCGGGCGGCATCGCGGG CGGCGGT CTTGCGC-GCCGCCCGCAGG TTTATGACCTTGCCT fumC 1907074 - 1905677 - | fumarate hydratase Pden_1909 1907628 - 1907167 - | hypothetical protein TERM 1218 1907763 - 1907747 - R 100 -15.1 -5.18561 | CAAATACTCAAAAAA CCGCGCC ACA GGCGCGG CTGCAAAGCCGTAAT TERM 1219 1908095 - 1908064 - R 87 -5.6 -5.00884 | overlap 1908065 1908069 ATCTTGCGCAAAAAA CGCAAGGGCGCCCC GAAA GGCGCCCCCGTCCG GTCCGGCAATGGCCG TERM 1220 1908088 - 1908069 - R 78 -12.8 -3.52177 | overlap 1908065 1908064 GCGCAAAAAACGCAA GGGCGCCC CGAA AGGCGCCC CCGTCCGGTCCGGCA Pden_1911 1908446 - 1908117 - | hypothetical protein anmK 1910221 - 1909112 - | anhydro-N-acetylmuramic acid kinase TERM 1221 1909407 - 1909355 - G 80 -16.1 -3.24456 | overlap 1909356 ACAGACCAGGATCAA CTGCGGCGGCCGCTGCAACAGCG CAACCCC CGCCGCCACCGCCGCCGCCGCCG CATGGGTCAGCGTCG TERM 1222 1909409 - 1909356 - G 73 -15.9 -2.54192 | gap 1, overlap 1909355 CAGACCAGGATCAAC TGCGGCGGCCGCTGCAACAGC-GCAA CCC CCGCCGCCACCGCCGCCGCCGCCGCA TGGGTCAGCGTCGCC Pden_1913 1910277 - 1911521 + | tyrosyl-tRNA synthetase TERM 1223 1911510 - 1911497 - T 70 -8.1 -3.9461 | overlap 1911500 GGTCGGCAAGAAGAA GCACC GGAT GGTGC AACTGGGATAAACAG TERM 1224 1911529 - 1911547 + T 100 -13.8 -4.56775 | opp_overlap 1911525 1911523 1911529 TGGGATAAACAGGAA GGCCGGGG CGA TCCCGGCC TTTTTCACCCAGCCT TERM 1225 1911547 - 1911529 - T 78 -13.1 -3.50335 | opp_overlap 1911529, overlap 1911525 1911523 TGGGATAAACAGGAA GGCCGGG GCGAT CCCGGCC TTTTTCACCCAGCCT Pden_1914 1912147 - 1911566 - | hypothetical protein Pden_1915 1912637 - 1912182 - | hypothetical protein TERM 1226 1912659 - 1912676 + r 81 -14.1 -3.53091 | opp_overlap 1912659 CTCCTTGATGAAAAA GCCCCGC GCGG GCGGGGC TTTCGCGACAGGGAT TERM 1227 1912676 - 1912659 - R 100 -14.1 -4.72272 | opp_overlap 1912659 CTCCTTGATGAAAAA GCCCCGC GCGG GCGGGGC TTTCGCGACAGGGAT Pden_1916 1913295 - 1912702 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type Pden_1917 1913794 - 1913285 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1228 1913332 - 1913355 + g 72 -13.8 -3.22653 | overlap 1913329 TCATCCGGTCGGGAT TCGCCGGCGG CTCG CCGCGGGCGA TCTTGTCGACATGCT pgk 1913972 - 1915168 + | phosphoglycerate kinase TERM 1229 1915211 - 1915195 - T 71 -10.8 -3.59979 | opp_overlap 1915176 1915195 GGCGGCGATGCGAAA GGGGCC TTCGC GGCCCC TTTTTGCATCGGCGA TERM 1230 1915195 - 1915211 + T 91 -10.8 -4.65895 | opp_overlap 1915195, overlap 1915176 GGCGGCGATGCGAAA GGGGCC TTCGC GGCCCC TTTTTGCATCGGCGA Pden_1919 1915624 - 1915409 - | hypothetical protein TERM 1231 1916428 - 1916416 - g 72 -3.3 -4.62069 | GGGCGAGGCGAAAAA GGTCT ACG AGGCC AAGGGCATCGACATC Pden_1920 1915751 - 1916680 + | fructose-bisphosphate aldolase TERM 1232 1916731 - 1916752 + F 89 -10.8 -4.54727 | TTTCGAACGGTGAAG GGGCGTCC GTTTCG GGGCGCCC TTTTCCTTTCGGGCA TERM 1233 1916925 - 1916911 - g 76 -7 -4.26903 | CGCAGCCGATGAAAA GCCGGC CTC GCCCGC CCCCGCCGCATCGCA Pden_1921 1916810 - 1917850 + | signal recognition particle-docking protein FtsY TERM 1234 1917843 - 1917859 + T 78 -3.5 -4.87318 | overlap 1917832 CGCTGGTCGGTCTCG GGGACTG AAC CCGGCCC TTTTTCCGTTTTCCA Pden_1922 1918275 - 1917907 - | hypothetical protein hisG 1919007 - 1918330 - | ATP phosphoribosyltransferase catalytic subunit hisZ 1920086 - 1919004 - | ATP phosphoribosyltransferase regulatory subunit TERM 1235 1919633 - 1919591 - G 93 -13.3 -4.19258 | gap 1 AGATGTGATGCAAAA GCGCCGCGCGCCGCG-CGCC CGAC AGCGGCAGGGCGCGCACCGC ATCCATCAGCAGGTC hisS 1921567 - 1920083 - | histidyl-tRNA synthetase TERM 1236 1921169 - 1921181 + g 72 -4.7 -4.4078 | opp_overlap 1921157, overlap 1921166 GAACTGGCGGAAGCG GCCGG GGC CGGGC TTTTCGTTGCGCCAG TERM 1237 1921528 - 1921546 + g 75 -6.6 -4.40181 | overlap 1921524 ACCCCTTGGGCGTCT CGGCCTTG GGA CGGGGCTG TTTCTTCTGATCTTT Pden_1926 1921616 - 1921831 + | hypothetical protein TERM 1238 1921942 - 1921901 - T 70 -5.6 -4.2074 | gap 1, overlap 1921902 TTGGGAACAGAGAAA TCAGCGGCTGGCCGGCCCG AGGCG CGGGCCGGTCGGT-GCCGG AGCTTGCGGCGCCGT Pden_1927 1922392 - 1921901 - | hypothetical protein Pden_1928 1923002 - 1922493 - | cell wall hydrolase, SleB gatB 1924640 - 1923126 - | aspartyl/glutamyl-tRNA amidotransferase subunit B Pden_1931 1928345 - 1925055 - | hypothetical protein TERM 1239 1925777 - 1925735 - G 76 -13.3 -3.53224 | gap 2 CAGCCCCGCCCGAAA CCGCAGCGCCACCACCGGCCG CCG CGGCGGGACG-GGCGC-GCGG ACGGGCCGAACCACG TERM 1240 1925820 - 1925798 - G 100 -22 -4.23892 | opp_overlap 1925788 1925819 CCGAACCACGCAAAA GCCCGCCCGG ATC CCGGGCGGGC GCGGCAGCGGTTTCG TERM 1241 1925912 - 1925956 + g 73 -12.8 -3.53012 | overlap 1925913 ATGGATCGGCCGCAT CGCTGGC-CGTGCCCGGCTTGC GCT GCG-GCCGGGCCTGCGCCAGCC TTTCGCCGCGCGGCA TERM 1242 1925913 - 1925955 + g 74 -16.3 -2.71712 | overlap 1925912 TGGATCGGCCGCATC GCTGGC-CGTGCCCGGCTTGC GCT GCG-GCCGGGCCTGCGCCAGC CTTTCGCCGCGCGGC TERM 1243 1927683 - 1927670 - G 73 -9.5 -3.85698 | GCTCGCCCGGATAAA GCCCG GCCT CGGGC ACGGCGCAATAGCCC Pden_1932 1928360 - 1929205 + | hypothetical protein TERM 1244 1929240 - 1929265 + T 100 -16.1 -4.34402 | overlap 1929241 GCGCATTGTCAGAGG CGGGCGGCGCA GCGA TGCGCCGCCCC TTTTCGTCTCAGGCG TERM 1245 1929241 - 1929264 + T 100 -19.6 -3.2032 | overlap 1929240 CGCATTGTCAGAGGC GGGCGGCGCA GCGA TGCGCCGCCC CTTTTCGTCTCAGGC Pden_1933 1930560 - 1929274 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1246 1930639 - 1930624 - R 81 -7.5 -4.4846 | GAAGGGAACAAGAAA GGCGC GGGCCG GCGCC GGAAAGGACGGCGCC Pden_1934 1931267 - 1930887 - | translation initiation factor 2, gamma subunit, GTPase TERM 1247 1931253 - 1931235 - G 72 -5.2 -4.43477 | overlap 1931237 1931247 GCCAGCCAATGAAAA TGCTGCGC AAA GCGCAAGA ATACGTCCGAACATC TERM 1248 1931500 - 1931511 + r 72 -7.2 -4.28049 | TACCCGCCGGGATTC CGCG TTAC CGCG TTTTCAACTTTTCAA TERM 1249 1931655 - 1931695 + r 88 -8.9 -4.68908 | opp_overlap 1931672, overlap 1931656 CGGCTTCTAGACGCT TGCGCGGCGGATGAAAAGG GCA TTTTTGCACCCGCCACGCG TTTCTTTTCACTCGG metH 1935455 - 1931703 - | B12-dependent methionine synthase lipB 1935600 - 1936256 + | lipoyltransferase TERM 1250 1936287 - 1936298 + F 76 -2.2 -4.88711 | overlap 1936285 ATATTCTCCCTCAGC CGTT CTAC GACG TTTTTCCTGTATTCT Pden_1937 1936399 - 1936866 + | cytochrome c, class I TERM 1251 1936894 - 1936934 + F 100 -17.5 -4.41897 | opp_overlap 1936918 1936919, overlap 1936896 1936910 1936911 CGAGATGTCTCGACG GCCCCGCCCCTGCGTGC GACAAAA GCGCGCAGGGGCGCGAC TTTTAGTCCTTTCTT TERM 1252 1936896 - 1936932 + F 86 -18.7 -2.53022 | opp_overlap 1936918 1936919, overlap 1936894 1936910 1936911 AGATGTCTCGACGGC CCCGCCCCTGCGTGC GACAAAA GCGCGCAGGGGCGCG ACTTTTAGTCCTTTC TERM 1253 1936933 - 1936918 - f 73 -6 -4.36914 | opp_overlap 1936896 1936894 1936911 1936910, overlap 1936919 CTGCGTGCGACAAAA GCGCGC AGGG GCGCGA CTTTTAGTCCTTTCT Pden_1938 1937038 - 1938714 + | cytochrome-c oxidase TERM 1254 1938752 - 1938784 + G 100 -20 -3.60296 | gap 1, overlap 1938754 CCCTATGCATGGCAT G-ATGCGGCCCCGGA GAAT TCCGGGGCCGCATGC TTTCGGCTCGAGGTC TERM 1255 1938754 - 1938781 + G 89 -22.8 -2.92613 | overlap 1938752 CTATGCATGGCATGA TGCGGCCCCGGA GAAT TCCGGGGCCGCA TGCTTTCGGCTCGAG Pden_1939 1938734 - 1939228 + | hypothetical protein TERM 1256 1939338 - 1939318 - T 75 -12.5 -3.54741 | GAGCATCTGTCGAAA TGGCGGGCC TCG GGCCCGCGA AATGCCAGCTCGCCA TERM 1257 1939794 - 1939775 - T 100 -12.1 -4.72986 | opp_overlap 1939775 CACGGCCATGAAAAA GGCCCGC GCGGTG GCGGGCC TTTCTTCCTGCGGCG TERM 1258 1939775 - 1939794 + T 95 -12.1 -4.24342 | opp_overlap 1939775 CACGGCCATGAAAAA GGCCCGC GCGGTG GCGGGCC TTTCTTCCTGCGGCG Pden_1940 1942315 - 1939823 - | FAD dependent oxidoreductase TERM 1259 1942440 - 1942416 - R 79 -2.7 -5.00616 | overlap 1942421 GTTCTGGGCAAAAAA CGACATGGC GCATTCG GCCAGGACG CCAGACGCAAACGCC TERM 1260 1942471 - 1942452 - R 91 -16.4 -3.71378 | GACGCCAGACGCAAA CGCCCCGG CGAA CCGGGGCG TCGGGATCACAGCAT Pden_1941 1943488 - 1942478 - | glyoxylate reductase Pden_1942 1943580 - 1944182 + | hypothetical protein Pden_1943 1945057 - 1944200 - | hypothetical protein Pden_1944 1947247 - 1945211 - | peptidyl-dipeptidase Dcp TERM 1261 1946551 - 1946563 + g 75 -4.7 -4.62302 | overlap 1946505 CCCGCCAAGCCGCTT CGCGC AGG GCCCG TTTTTCGGAATATTC Pden_1945 1948333 - 1947281 - | UBA/THIF-type NAD/FAD binding protein TERM 1262 1947934 - 1947910 - G 75 -9.2 -4.23674 | overlap 1947911 1947914 CGGCAGCAAGATAAA GGCAGACCGG CGCGC CCAGCCCGCC TGCGCCGACCACCAG Pden_1946 1948799 - 1948338 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 1263 1948695 - 1948646 - G 83 -19.9 -2.70932 | opp_overlap 1948690 1948692 1948694 GCCCGGTGGGAACCA GGCGGATCTGGCCGGGATCGAGC ACCA GCTCGCCCCCGCCCAGGTCGGCC CGCAGGTCGGCGCCG TERM 1264 1948692 - 1948725 + g 74 -15.9 -2.73875 | opp_overlap 1948646, overlap 1948690 1948694 GCCCCCGCCCAGGTC GGCCCGCAGGTCGGC GCCG GCCGAACCGCGGGTC TGGTATTCGGGCAGG TERM 1265 1948694 - 1948723 + g 72 -14.9 -2.9155 | opp_overlap 1948646, overlap 1948692 1948690 CCCCGCCCAGGTCGG CCCGCAGGTCGGC GCCG GCCGAACCGCGGG TCTGGTATTCGGGCA TERM 1266 1949907 - 1949871 - H 71 -13.5 -3.01712 | CTCTGCCGCCGAACA GGCCGAGGCGGCGGCCG AAG CCGCCATCGCCGCAGCC GACCGCGCCGCGGAT Pden_1948 1950168 - 1951043 + | hypothetical protein Pden_1949 1952348 - 1951059 - | putative L-sorbosone dehydrogenase TERM 1267 1951202 - 1951186 - G 75 -6.5 -4.52589 | overlap 1951188 TCCTCGGACAGAAAA CCCGACA GGA TGTCGCG CGGCGGACCCGAGGG pgi 1954090 - 1952489 - | glucose-6-phosphate isomerase Pden_1951 1954766 - 1954092 - | 6-phosphogluconolactonase Pden_1952 1956265 - 1954763 - | glucose-6-phosphate 1-dehydrogenase Pden_1953 1956884 - 1956291 - | hypothetical protein Pden_1954 1958077 - 1956881 - | SAM-dependent methyltransferase TERM 1268 1958264 - 1958254 - g 71 -2.4 -4.56775 | opp_overlap 1958254 AGCGTTCTGCAAAAA GCCG CAG CGCC TATCTGGCCAAGATC Pden_1955 1958193 - 1959995 + | phosphogluconate dehydratase Pden_1956 1960564 - 1960034 - | putative PAS/PAC sensor protein Pden_1957 1961101 - 1960643 - | protein tyrosine phosphatase Pden_1958 1961593 - 1961105 - | hypothetical protein hisD 1962900 - 1961590 - | histidinol dehydrogenase Pden_1960 1963590 - 1963111 - | hypothetical protein Pden_1961 1964863 - 1963583 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Pden_1962 1965483 - 1965734 + | hypothetical protein Pden_1963 1966104 - 1965805 - | XRE family plasmid maintenance system antidote protein TERM 1269 1966331 - 1966316 - R 89 -4.6 -5.12474 | CAGAAGACACAAAAA CCCGCC ATTT AGCAGG TCTCACACTTGGATT TERM 1270 1966337 - 1966353 + r 70 -5.1 -4.37092 | ATTTAGCAGGTCTCA CACTTGG ATT TCGAGTG TTTTATGACAGAAGT Pden_1964 1967483 - 1966566 - | hypothetical protein TERM 1271 1967281 - 1967302 + g 74 -12.3 -3.5393 | overlap 1967265 1967267 GCGATGCGATCCATT GCCTCGTTG ATCT CAGCGAGGC TTTCACGGCGATCCT Pden_1965 1968294 - 1967473 - | hypothetical protein Pden_1966 1968774 - 1968478 - | hypothetical protein Pden_1967 1968801 - 1969079 + | hypothetical protein Pden_1968 1969740 - 1969222 - | hypothetical protein Pden_1969 1970968 - 1969844 - | hypothetical protein TERM 1272 1970846 - 1970863 + g 77 -3.3 -4.74801 | overlap 1970825 GAGAACATATTTCGT CGCCTTG TTGG CAGAGCG TTTTTCATAGGATTC Pden_1970 1971539 - 1970958 - | putative pancortin-3 Pden_1971 1971910 - 1972491 + | hypothetical protein TERM 1273 1973182 - 1973155 - g 79 -14.9 -3.29144 | gap 1, overlap 1973140 GGACCTGGCCGACAA GACCC-GCCGCG GGTTG CGCGGCCGGGTC GAGGACGGCAAGTCC TERM 1274 1974446 - 1974410 - g 72 -6.7 -4.36914 | opp_overlap 1974417, overlap 1974417 CCGGGGCGTACAAAA GCAAAAACCTCCGC-GC TTAAT GCTACGGAGGTT-TCGC AATTATCGTTGGTTG TERM 1275 1974440 - 1974417 - g 89 -6.7 -5.1417 | gap 1, opp_overlap 1974417, overlap 1974410 GTACAAAAGCAAAAA CCTCCGC-GC TTAAT GCTACGGAGG TTTCGCAATTATCGT Pden_1972 1972763 - 1974499 + | recombinase TERM 1276 1974540 - 1974557 + F 100 -9.1 -4.93296 | ACCCCGCGGCCGTTT GCGCTGG ATTG TCAGCGC TTTTTGTCATCGTCG TERM 1277 1975904 - 1975917 + F 78 -4.5 -4.7254 | overlap 1975899 GTCGCCTTACGGCTT CGCAG AGCC CTGTG TTTTTAGTAAACAGT TERM 1278 1977485 - 1977520 + F 74 -11.2 -3.62864 | opp_overlap 1977476 1977513 1977517, overlap 1977476 1977486 TAAGTACCTGGTTAA CCCGGTTGTTGATACC CGAG GGTAACAACAACTGGA TTTCAGGTGGGTTTC TERM 1279 1977486 - 1977519 + F 75 -14.7 -2.77236 | opp_overlap 1977476 1977513 1977517, overlap 1977476 1977485 AAGTACCTGGTTAAC CCGGTTGTTGATACC CGAG GGTAACAACAACTGG ATTTCAGGTGGGTTT TERM 1280 1977754 - 1977773 + F 78 -7.8 -4.34737 | opp_overlap 1977769, overlap 1977756 1977769 GCATGTACGTTTCCC GCCCCTTC CGAG GAAGGGAC TTTGTTCCTTCGTCG TERM 1281 1977776 - 1977796 + F 78 -12.7 -3.44186 | opp_overlap 1977769 1977773, overlap 1977769 CCGAGGAAGGGACTT TGTTCCTTC GTC GAAGGAACA TTGGTTAGTGTACTT TERM 1282 1977931 - 1977918 - f 72 -6.7 -4.23892 | CTGAACGATGTAAAA TGCTC CGAA GAGCA ATGCGTCCGACAGGA TERM 1283 1978883 - 1978870 - f 79 -6.7 -4.46212 | TCTCTTACGAGAAAA CTCCA TCTC TGGAG CGGTCCTGCGATGTC Pden_1973 1979926 - 1980246 + | hypothetical protein Pden_1974 1980668 - 1980853 + | Mu-like prophage major head subunit gpT Pden_1975 1981145 - 1980891 - | hypothetical protein TERM 1284 1981180 - 1981147 - H 87 -14.6 -3.57263 | overlap 1981148 ATGTGCAGGGGCAAA CCGGCGGGGAGG ATGGGTCGGA CCTCCCCGCCGA CGACAATCTTCAGCA TERM 1285 1981179 - 1981148 - H 78 -15.9 -2.74144 | overlap 1981147 TGTGCAGGGGCAAAC CGGCGGGGAGG ATGGGTCGGA CCTCCCCGCCG ACGACAATCTTCAGC Pden_1976 1981241 - 1981540 + | hypothetical protein Pden_1977 1981544 - 1981885 + | hypothetical protein Pden_1978 1982268 - 1983287 + | periplasmic binding protein/LacI transcriptional regulator TERM 1286 1983353 - 1983370 + T 80 -4.7 -4.78572 | opp_overlap 1983339 1983336, overlap 1983349 GGCGCTGGGTGGGCC CGCGCGC GACG GCCTGCG TTTTCTTCGTTCCCC Pden_1979 1984283 - 1983453 - | methionine aminopeptidase, type I Pden_1980 1984370 - 1985110 + | molybdopterin binding domain-containing protein Pden_1981 1985107 - 1985826 + | GCN5-related N-acetyltransferase Pden_1982 1986227 - 1985841 - | hypothetical protein Pden_1983 1987042 - 1986242 - | hypothetical protein Pden_1984 1988772 - 1987039 - | dihydroxy-acid dehydratase Pden_1985 1989174 - 1988851 - | transcriptional coactivator/pterin dehydratase Pden_1986 1990613 - 1989186 - | phospholipase D/transphosphatidylase Pden_1987 1990702 - 1991643 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Pden_1988 1991660 - 1992928 + | FolC bifunctional protein Pden_1989 1994052 - 1992946 - | AFG1 family ATPase TERM 1287 1993668 - 1993650 - G 78 -6.6 -4.5442 | CGTCGAAGCACAAAA GCTGCGCA TGC TGCGCCAC CGCCTTGGCGACGGG TERM 1288 1994097 - 1994074 - R 100 -19.6 -4.41348 | CCCCTGCCAAAGAAA GGACCGGCCC GCAA GGGCCGGTCC GGCAATTCCCACGAA Pden_1990 1994742 - 1994137 - | hypothetical protein TERM 1289 1994790 - 1994776 - H 74 -12.8 -3.1739 | overlap 1994774 CAGATGAATGGAATA CCGGCC GCA GGCCGG CCGTTGAAAATTGCG Pden_1991 1994943 - 1996325 + | aldehyde dehydrogenase Pden_1992 1997632 - 1996322 - | major facilitator transporter TERM 1290 1997783 - 1997764 - H 100 -16.4 -5.52384 | opp_overlap 1997764 TGGGCACGAAAAAAA GGCCGCCC ACGC GGGCGGCC TCTTGCGGCAGGTGC TERM 1291 1997764 - 1997783 + H 85 -16.4 -3.02144 | opp_overlap 1997764 TGGGCACGAAAAAAA GGCCGCCC ACGC GGGCGGCC TCTTGCGGCAGGTGC Pden_1993 1997908 - 1999521 + | hypothetical protein TERM 1292 1999555 - 1999531 - T 100 -20.7 -3.39327 | overlap 1999544 CCTTGAGATGCAGAA CCCGCCCCGAC AAG GCCGGGGCGGG CATGATGATCCGCGC Pden_1994 2000324 - 1999629 - | hypothetical protein TERM 1293 2000639 - 2000660 + r 72 -7.1 -4.22346 | opp_overlap 2000640, overlap 2000640 CTTCGGCAATGCAAA AGGCCGCCC CGAA GGACGGCCA TTTTCGCTGGATTTC TERM 1294 2000659 - 2000640 - R 95 -12.8 -4.27316 | opp_overlap 2000640 2000639 TTCGGCAATGCAAAA GGCCGCCC CGAA GGACGGCC ATTTTCGCTGGATTT Pden_1995 2002605 - 2000815 - | HemY domain-containing protein TERM 1295 2001579 - 2001598 + gr 70 -5.6 -4.25104 | gap 1 TCAGGTCCTCGAAGC GCC-GCAGC CGC GCGGCCGGC TTTTCGTCCGGCACG Pden_1996 2004139 - 2002568 - | hypothetical protein TERM 1296 2002649 - 2002697 + gr 71 -12.4 -3.25823 | gap 2, overlap 2002650 GGTCCAGTCGGCCAT CGCCGC-CTGGCCG-GATTGCGGC AGG GCGGCGATCTCGGCCAGCGCGCCC TTGATGTCGCCGGCA TERM 1297 2002650 - 2002696 + gr 77 -15.9 -2.55351 | gap 2, overlap 2002649 GTCCAGTCGGCCATC GCCGC-CTGGCCG-GATTGCGGC AGG GCGGCGATCTCGGCCAGCGCGCC CTTGATGTCGCCGGC TERM 1298 2003086 - 2003108 + gr 75 -9 -4.14472 | GCAATTCGGATGCCT GCGCCTCGGC CGC GGCGATGCGC TTTTCGGCCTCTTCG Pden_1997 2004867 - 2004193 - | putative uroporphyrinogen-III synthase Pden_1998 2004932 - 2006002 + | metalloendopeptidase glycoprotease family Pden_1999 2005999 - 2006943 + | glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Pden_2000 2006940 - 2007215 + | YCII-related Pden_2001 2007215 - 2007640 + | hypothetical protein TERM 1299 2008003 - 2008039 + G 79 -10.8 -4.07885 | gap 1, overlap 2007997 GGCCGATATCCGCAA GGCCGTGTTCAAGCGCG TCAT CGC-CATGAGCCCGGCC TTTTACGAGCGCGTG Pden_2002 2007683 - 2009476 + | lipid ABC transporter ATPase/inner membrane protein Pden_2003 2010026 - 2009604 - | Allergen V5/Tpx-1 family protein Pden_2004 2010277 - 2010762 + | hypothetical protein Pden_2005 2010891 - 2012780 + | acyl-CoA synthetase TERM 1300 2012872 - 2012848 - f 74 -5 -4.52857 | overlap 2012850 ATTGTTCACATAAAA GACCATGAAC TATCT ATTCATGGAC CAAACAATTGAAGCT TERM 1301 2012974 - 2013009 + F 81 -13.2 -3.57561 | CCGTTGTCGTCCCCC CGACGACGATGATCGG CCGC CCGATCTGCGGCGTCG TTTCGGACCTTGGGG Pden_2006 2012982 - 2014001 + | hypothetical protein TERM 1302 2015036 - 2015015 - g 72 -8.6 -4.07687 | opp_overlap 2015014 ACGGTTGCCGGAAAA GCGCCCGG AAAACG CCGCGCGC GTTCATCAAAGCAGG Pden_2007 2014058 - 2015065 + | hypothetical protein TERM 1303 2015115 - 2015090 - T 100 -21.9 -3.61268 | opp_overlap 2015090 GATCGAAGCTTGAAA GGGCCGCTGCG ATTT CGCAGCGGCCC TTATCTTGTCAGCGC TERM 1304 2015090 - 2015115 + T 100 -21.9 -3.7511 | opp_overlap 2015090 GATCGAAGCTTGAAA GGGCCGCTGCG ATTT CGCAGCGGCCC TTATCTTGTCAGCGC Pden_2008 2016779 - 2015124 - | putative ABC transporter ATP-binding protein TERM 1305 2015312 - 2015289 - G 77 -3.8 -4.7497 | TCGATCGAGGAAAAA GCGGTCGT GCGAGATG ATGACCGC GCAGCCGGCGAAATC Pden_2009 2017709 - 2016852 - | sulfotransferase Pden_2010 2019177 - 2017786 - | MiaB-like tRNA modifying enzyme YliG Pden_2011 2019275 - 2019745 + | hypothetical protein Pden_2012 2019730 - 2020119 + | hypothetical protein Pden_2013 2020885 - 2020124 - | ABC-2 type transporter TERM 1306 2020868 - 2020838 - G 83 -15.5 -3.61715 | gap 1, opp_overlap 2020825 2020866, overlap 2020861 GATCGTGCGGAAGAA CCGCGCCATC-TCG TGGC CGAAGACGGCGCGG GCGGAACGCCAGTTC Pden_2014 2021811 - 2020882 - | ABC transporter related Pden_2015 2022711 - 2021929 - | phospholipid/glycerol acyltransferase Pden_2016 2023640 - 2022711 - | hypothetical protein TERM 1307 2023106 - 2023073 - G 76 -8.1 -4.30576 | gap 1, overlap 2023082 CGCCGATCAGCAAAA GCGAGACCAGCCCCAG CAC CCGCAGCCGGT-TCGC GGCCGAAACCAGCGG Pden_2017 2024311 - 2023637 - | ABC transporter related Pden_2018 2024436 - 2025395 + | Zinc finger-domain-containing protein Pden_2019 2027979 - 2025475 - | hypothetical protein Pden_2020 2029335 - 2028070 - | diaminopimelate decarboxylase Pden_2021 2029610 - 2029335 - | hypothetical protein Pden_2022 2031164 - 2029755 - | argininosuccinate lyase Pden_2023 2031256 - 2031741 + | redoxin domain-containing protein Pden_2024 2032303 - 2031719 - | DNA-3-methyladenine glycosylase I TERM 1308 2031971 - 2031953 - G 71 -11 -3.59836 | overlap 2031949 AAAGGACCAAATGAA GGGCGAAA ACC CTTCGCCC CCCTCGATCTCCAGG Pden_2025 2032396 - 2033223 + | diguanylate phosphodiesterase TERM 1309 2034599 - 2034589 - g 71 -2.4 -4.62069 | overlap 2034590 CCGCGACGCGAAAAA GGGC CTT GCCA CGCTGTGCATCGGCG Pden_2026 2033477 - 2034652 + | acetyl-CoA acetyltransferase TERM 1310 2034687 - 2034661 - f 100 -12.3 -4.65895 | overlap 2034662 CCCCTGATCGAAAAA GGTGCGCGCAA CTATC TTGCGCGCACT CGCCCGGTTCGGTAA TERM 1311 2034686 - 2034662 - f 88 -15.8 -3.39216 | overlap 2034661 CCCTGATCGAAAAAG GTGCGCGCAA CTATC TTGCGCGCAC TCGCCCGGTTCGGTA TERM 1312 2034864 - 2034808 - g 78 -14.3 -3.55622 | overlap 2034811 TCGAAGGCGCTGAAA GAGGCAGGCTACACCGTCGCGGCGAAC TAT GCCGGCAACGACGATGCAGCCCGCGCC TTTACCGAGGAAACC TERM 1313 2034861 - 2034811 - g 73 -16.8 -2.60992 | overlap 2034808 AAGGCGCTGAAAGAG GCAGGCTACACCGTCGCGGCGAAC TAT GCCGGCAACGACGATGCAGCCCGC GCCTTTACCGAGGAA Pden_2027 2034739 - 2035464 + | acetoacetyl-CoA reductase TERM 1314 2035482 - 2035513 + T 93 -20.2 -2.76189 | opp_overlap 2035486, overlap 2035486 CGCCACCCCTGACAT GCAACGGCCCGCGA GATC TCGCGGGCCGTTTC TCATTCCATGGGTTG TERM 1315 2035486 - 2035509 + T 100 -19.6 -4.06904 | opp_overlap 2035486, overlap 2035482 ACCCCTGACATGCAA CGGCCCGCGA GATC TCGCGGGCCG TTTCTCATTCCATGG TERM 1316 2035509 - 2035486 - T 93 -19.6 -3.1247 | opp_overlap 2035486 2035482 ACCCCTGACATGCAA CGGCCCGCGA GATC TCGCGGGCCG TTTCTCATTCCATGG Pden_2028 2035781 - 2035563 - | hypothetical protein Pden_2029 2036544 - 2035786 - | methyltransferase small Pden_2030 2036749 - 2036537 - | hypothetical protein TERM 1317 2036854 - 2036842 - g 70 -3.3 -4.45544 | GGGCATGAACGAAAA CGTCT CCA AGCCG CTCGACCGGCTGTCG TERM 1318 2037140 - 2037120 - g 71 -10.3 -3.72695 | opp_overlap 2037134 ACGTGGTCGATGAAA GCCAGCAGC GGC GCGGCCGGC CGACGGCCAACCTGC Pden_2031 2036825 - 2037826 + | trans-hexaprenyltranstransferase TERM 1319 2037911 - 2037879 - T 76 -14.2 -3.07443 | opp_overlap 2037880 2037886, overlap 2037886 CCAGACCCCACCTAA CGAAAAAGCCCGGC GCGAA GCCGGGCTTTTCCT TTGCCTGAAGCTCTG TERM 1320 2037880 - 2037910 + T 90 -15.5 -3.65529 | opp_overlap 2037879 2037886, overlap 2037886 CAGACCCCACCTAAC GAAAAAGCCCGGC GCGAA GCCGGGCTTTTCC TTTGCCTGAAGCTCT TERM 1321 2037904 - 2037886 - T 100 -13.1 -4.88407 | opp_overlap 2037886 2037880, overlap 2037879 CCACCTAACGAAAAA GCCCGGC GCGAA GCCGGGC TTTTCCTTTGCCTGA TERM 1322 2037886 - 2037904 + T 100 -13.1 -4.56914 | opp_overlap 2037879 2037886, overlap 2037880 CCACCTAACGAAAAA GCCCGGC GCGAA GCCGGGC TTTTCCTTTGCCTGA Pden_2032 2039377 - 2037929 - | ammonium transporter Pden_2033 2039634 - 2041964 + | 1A family penicillin-binding protein TERM 1323 2041970 - 2041991 + T 95 -15.1 -4.05788 | opp_overlap 2041970 TCAGCAATAGAACAA GGCCGGTCC CGCG GGGCCGGCC TTTCCTTTGACGCGG TERM 1324 2041991 - 2041970 - T 93 -13.7 -3.98627 | gap 1, opp_overlap 2041970 TCAGCAATAGAACAA GGCCGGTCCC GCG GGG-CCGGCC TTTCCTTTGACGCGG Pden_2034 2042622 - 2042017 - | toluene tolerance family protein Pden_2035 2043328 - 2042603 - | VacJ family lipoprotein TERM 1325 2043035 - 2043020 - G 75 -10.4 -3.97947 | CGTATTGACCAGAAA GCGCAG GGTG CTGCGC GCGGCCGGCCCCGGC Pden_2036 2043489 - 2045231 + | type I secretion system ATPase TERM 1326 2045291 - 2045271 - g 70 -8.2 -3.90744 | CGCCGGTCGAAAGAA TGCCCGCC CAGCC GGCCGGCA AGCCCGCCGGGCACC Pden_2037 2045228 - 2046661 + | HlyD family type I secretion membrane fusion protein Pden_2038 2046692 - 2046952 + | hypothetical protein TERM 1327 2047030 - 2047044 + T 71 -4.2 -4.57073 | TTCCCCGCCCGCGTT GTCCTG TCG CACGAC TTTTTCAGCAGCCTG Pden_2039 2047986 - 2047060 - | ornithine carbamoyltransferase Pden_2040 2048560 - 2048084 - | GCN5-related N-acetyltransferase Pden_2041 2049725 - 2048553 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 1328 2049856 - 2049895 + r 81 -9.9 -4.31379 | overlap 2049857 2049882 GTCCGAACGATCATG TCCCGTCGCATAGCGCG GAAGCG TGCGCCGTGCAACGGGG TTTTCATGGCTTCAT Pden_2042 2050720 - 2049899 - | ABC-2 type transporter Pden_2043 2050852 - 2051457 + | GcrA cell cycle regulator TERM 1329 2051694 - 2051718 + G 100 -16.4 -4.11623 | TATCGACGTGATCGA GCGCGGCGCG GATGG CGCGCTGCGC TTTCATTTCCTGCTG Pden_2044 2051458 - 2051901 + | NUDIX hydrolase TERM 1330 2052756 - 2052744 - g 78 -6.2 -4.57073 | CATCCCGGTGAAAAA GGGC GACAA GCCC TGGCCGGGGATGGAG Pden_2045 2052010 - 2053728 + | methionyl-tRNA synthetase TERM 1331 2054072 - 2054041 - g 84 -9.5 -4.4261 | GGCGCAAGAGGAAAA TGCCGATGTCGTC GTCCTG GACAACATCGTCA TCACCGCCGCAGGTT Pden_2046 2053922 - 2056063 + | TonB-dependent receptor TERM 1332 2056086 - 2056120 + F 100 -22.2 -4.17048 | opp_overlap 2056082, overlap 2056088 TTTCCTGAACATCTG CCTGCCCGGCTGTGGA CTT TCCGCAGCCGGGCATG TTCTTTTCAAGGGCA TERM 1333 2056088 - 2056118 + F 100 -23.4 -3.68435 | opp_overlap 2056082, overlap 2056086 TCCTGAACATCTGCC TGCCCGGCTGTGGA CTT TCCGCAGCCGGGCA TGTTCTTTTCAAGGG Pden_2047 2056156 - 2057076 + | arginase Pden_2048 2057754 - 2057392 - | hypothetical protein TERM 1334 2057544 - 2057534 - G 91 -2.4 -5.47218 | GGTGACTGAAAAAAA GCGG TAG CGGC CGACATGCGTCCTCC TERM 1335 2057794 - 2057774 - R 87 -14.7 -3.59979 | CGCCTCCATGCGAAA GCCCCCGCA TGA TGCGAGGGC TCGCGTCGGCCAATG Pden_2049 2058308 - 2057841 - | hypothetical protein TERM 1336 2058704 - 2058741 + r 86 -12.7 -3.92324 | gap 1, opp_overlap 2058723, overlap 2058705 GATCAGGGTTTCGGT CAGGGCCGGGTGGAACGT AGG AC-TTCCGCCCGGCCCGC TTTCGTGTTAACACC TERM 1337 2058705 - 2058740 + r 81 -16.2 -2.95073 | gap 1, opp_overlap 2058723, overlap 2058704 ATCAGGGTTTCGGTC AGGGCCGGGTGGAACGT AGG AC-TTCCGCCCGGCCCG CTTTCGTGTTAACAC Pden_2050 2059770 - 2059246 - | hypothetical protein Pden_2051 2060041 - 2059763 - | hypothetical protein Pden_2052 2060592 - 2060891 + | hypothetical protein Pden_2053 2060891 - 2061109 + | hypothetical protein TERM 1338 2061259 - 2061218 - f 100 -18.3 -4.21194 | gap 1, opp_overlap 2061225 2061226 2061258, overlap 2061226 CGCCAGTATGCAAAA GTAACAAA-GGCCACCACGC TGT GCGTGATGACCCTTTGTTAC GGCGCATTGCTGGGC TERM 1339 2061250 - 2061226 - f 100 -14.3 -4.45765 | opp_overlap 2061225 2061226, overlap 2061218 TGCAAAAGTAACAAA GGCCACCACGC TGT GCGTGATGACC CTTTGTTACGGCGCA Pden_2054 2061405 - 2062328 + | hypothetical protein TERM 1340 2062338 - 2062355 + F 86 -14.1 -3.71848 | opp_overlap 2062333 2062334 AAATAACTAACCCCA GCCCCGC TCCG GCGGGGC TTCTTCATGCCGAAA TERM 1341 2062397 - 2062378 - f 100 -12.8 -4.67038 | TGCCGAAAACGAAAA CGGCGAGG TTTC CCCCGCCG CCGACTTGCCCATGA TERM 1342 2062466 - 2062490 + F 86 -9.9 -4.49389 | CCAGGCATCGACCTT GGCGTCGTGAG CCG CTTGCGCCGCC TTTTCCTTGTCGCGT TERM 1343 2062854 - 2062880 + F 100 -18 -4.56597 | opp_overlap 2062851 GGGTTCCACCAACTT GCCTCCGCTACG CTC CGTGGCGGGGGC TTTTTACGGAACCCA TERM 1344 2062962 - 2062982 + F 91 -8.9 -4.73613 | ACGGTAACGAGTGCA GCTCGCCTA TTT TTGGCGGGC TTTTATTCGTGCTCC TERM 1345 2063129 - 2063148 + F 100 -12.8 -4.72272 | opp_overlap 2063128 2063127 GAACCAGTTGAAACG GCCGGGCC TTCG GGTCCGGC TTTTTAATCGCCGCA Pden_2055 2063243 - 2063758 + | hypothetical protein Pden_2056 2065175 - 2063766 - | hypothetical protein Pden_2057 2065343 - 2065744 + | hypothetical protein Pden_2058 2066510 - 2065737 - | hypothetical protein Pden_2059 2066894 - 2066523 - | IS5 family transposase OrfA TERM 1346 2067198 - 2067180 - g 86 -6.6 -5.05606 | opp_overlap 2067183 2067193 GTGAAGAAAAAGAAA GCCGTCGC GCT GAGACAGC ATGGCTGTCTTGCCT Pden_2060 2067123 - 2067452 + | HNH endonuclease Pden_2061 2068970 - 2067435 - | DNA-cytosine methyltransferase Pden_2062 2069038 - 2069502 + | DNA mismatch endonuclease vsr Pden_2063 2070169 - 2069678 - | phage terminase large subunit Pden_2064 2070623 - 2070153 - | P27 family phage terminase small subunit Pden_2065 2070830 - 2071036 + | cold-shock DNA-binding domain-containing protein TERM 1347 2071267 - 2071251 - g 70 -4.3 -4.41348 | overlap 2071253 TGGTTGCGAAAGAAA TGGCCCG TCA CCGACCA GGCGCGTGATCGTGC Pden_2066 2071116 - 2071421 + | hypothetical protein TERM 1348 2071652 - 2071639 - T 71 -3.7 -4.56597 | opp_overlap 2071647 2071648, overlap 2071640 GCGGGTGCTGAAAAA CCGCC GAAT GGCGC GGGCACCGAAGACCG Pden_2067 2071915 - 2071691 - | hypothetical protein Pden_2068 2073303 - 2071912 - | nuclease TERM 1349 2073380 - 2073400 + r 70 -8.1 -4.05446 | overlap 2073380 GCCCCAGAGATTTAC CCTCCCCCC GGG GGGCGGTGG TTTATGGTTGGCGGC Pden_2069 2073797 - 2073402 - | HNH endonuclease TERM 1350 2073873 - 2073862 - R 75 -4.4 -4.66537 | opp_overlap 2073862 GTGTCGAACAGAAAA GTGT TGCA ACAC TTTGGACTCGTTCAC Pden_2070 2074262 - 2073885 - | hypothetical protein Pden_2071 2074743 - 2074255 - | hypothetical protein TERM 1351 2074563 - 2074602 + g 85 -21.4 -2.62515 | overlap 2074591 2074592 CGGGCCCGGACGTCG CGGATGGGGGGTCCGGCC CGGA GGCCGGCCCTCCCATACG TAGTATGGGGAGATT Pden_2072 2076405 - 2074747 - | hypothetical protein Pden_2073 2076602 - 2076402 - | hypothetical protein Pden_2074 2076726 - 2076965 + | putative plasmid stability protein Pden_2075 2076962 - 2077396 + | PilT domain-containing protein Pden_2076 2078100 - 2077384 - | ECF subfamily RNA polymerase sigma-24 factor TERM 1352 2078134 - 2078096 - G 83 -13.1 -3.99324 | gap 1, opp_overlap 2078122 GCGGACCAGGAGAAA GACACGGGACGCC-AGCC TTCC GGCCGGGCGTCCAGCGCC TCTCTCGGGCCTCAG Pden_2077 2078431 - 2078198 - | hypothetical protein Pden_2078 2080687 - 2078525 - | hypothetical protein Pden_2079 2080770 - 2081024 + | hypothetical protein Pden_2080 2081021 - 2081476 + | hypothetical protein Pden_2081 2081476 - 2082801 + | recombinase Pden_2082 2082798 - 2083181 + | hypothetical protein Pden_2083 2084021 - 2083185 - | hypothetical protein Pden_2084 2084288 - 2084031 - | hypothetical protein TERM 1353 2084393 - 2084378 - H 100 -8.2 -6.01725 | AACAAAAAGAAAAAA GGCCCC AATC GGGACC CTTGGACGGATTCTG Pden_2085 2084523 - 2085431 + | hypothetical protein Pden_2086 2085415 - 2087601 + | RNA polymerase, sigma 32 subunit, RpoH Pden_2087 2087606 - 2089108 + | hypothetical protein Pden_2088 2089105 - 2091972 + | endonuclease Pden_2089 2091956 - 2092960 + | hypothetical protein TERM 1354 2093281 - 2093294 + G 72 -6.7 -4.32857 | overlap 2093277 CCACCGCAACCGCAA GCGAA GGCG TTCGC TTTCTGTTTCGAGCG Pden_2090 2092962 - 2094764 + | hypothetical protein Pden_2091 2094772 - 2095239 + | hypothetical protein Pden_2092 2095783 - 2095223 - | transposase, IS4 family protein TERM 1355 2096152 - 2096106 - g 78 -15.9 -3.04144 | gap 1, overlap 2096108 GCCCCATGCCTAAGA CACGTGCCGCATCGCCCGGACG GCCT CGTCCCAGCCA-GCGGCACATG GGCCGACGCGCAGGC TERM 1356 2096243 - 2096207 - g 81 -8 -4.56775 | gap 1, overlap 2096208 AGCGCTCCGCAAAAA GGGCAG-GAAGAGCGCA CCGG TTCGCCCTTCCCTGCCA CCCCACGGACCCTCA Pden_2093 2096063 - 2097922 + | 3-deoxy-D-manno-octulosonic-acid transferase-like TERM 1357 2097963 - 2097994 + G 70 -9.2 -3.85698 | overlap 2097954 2097954 CCAGCCGCCGGGGCT GCGCGCCCGCCTTC TGGC GCCGCTGGGCGCGC TTTATGCCGCCGCCA TERM 1358 2098004 - 2098057 + G 77 -17.5 -2.64616 | gap 3 GCGCGCTTTATGCCG CCGCCACCGCCC-GCCGCCTGGCGCG CGGCC CGCG-CACGCGGCCGGGCG-TGCCGG TGATCTGCATCGGCA TERM 1359 2098606 - 2098623 + G 74 -12.7 -3.54424 | GGCATGGACTGGCAG GGCCAGC GCGT GCTGGCC TTTGCCGGCATCGGC TERM 1360 2098822 - 2098794 - g 86 -12.3 -4.21194 | GGTGACGACGGAAAA GGATGCCGTGCGG CTG CCGCGCAGCTTCC GGCCCAAGGTGCTGG Pden_2094 2097919 - 2098908 + | tetraacyldisaccharide 4'-kinase Pden_2095 2099619 - 2098948 - | DSBA oxidoreductase Pden_2096 2100158 - 2099616 - | hypothetical protein Pden_2097 2100310 - 2101296 + | HhH-GPD family protein Pden_2098 2101374 - 2102516 + | alkane 1-monooxygenase Pden_2099 2103296 - 2102511 - | hypothetical protein Pden_2100 2104414 - 2103293 - | hypothetical protein TERM 1361 2104413 - 2104381 - G 100 -18.3 -4.16943 | overlap 2104382 CGGCAGACGCGAAAA GGCCCCGCCCGGCGG ATG CCGCAGGACGGGGCA AGGCGGTCCCGGCCG TERM 1362 2104412 - 2104382 - G 91 -21.8 -3.09844 | overlap 2104381 GGCAGACGCGAAAAG GCCCCGCCCGGCGG ATG CCGCAGGACGGGGC AAGGCGGTCCCGGCC Pden_2101 2105602 - 2104472 - | DNA methylase N-4/N-6 domain-containing protein Pden_2102 2106323 - 2105691 - | ribonuclease H TERM 1363 2106292 - 2106270 - G 77 -14.8 -3.14344 | CACGCCGGCCACGAA CCGCGCCCCG GAG CGAAGCGCGG CCTCCTCAAGGGAAT Pden_2103 2106799 - 2106320 - | ureidoglycolate hydrolase TERM 1364 2106508 - 2106482 - G 72 -8.6 -3.96148 | CGCCGGCACCAGAAA GGCGATCGGC GCGCCCG GCCGGCCGCC CTCGTCCGGCGCCAC Pden_2104 2108032 - 2106857 - | major facilitator transporter Pden_2105 2108324 - 2109073 + | UbiC transcription regulator-associated domain-containing protein TERM 1365 2110588 - 2110638 + G 70 -8.2 -3.85698 | gap 1, opp_overlap 2110606, overlap 2110589 CGGAATATCCCTCGG ACGTCATGCTTCCCGAAAGCCTG CCGGGA CAGGCGC-CGGGCAGCGTGACGC TTTATCCGCAGGCCG Pden_2106 2109183 - 2110664 + | ErfK/YbiS/YcfS/YnhG family protein Pden_2107 2110666 - 2111502 + | extensin family protein Pden_2108 2112237 - 2111506 - | CRP/FNR family transcriptional regulator Pden_2109 2113678 - 2112344 - | FliI/YscN family ATPase flgB 2113787 - 2114176 + | flagellar basal body rod protein FlgB flgC 2114188 - 2114580 + | flagellar basal body rod protein FlgC Pden_2112 2114592 - 2114870 + | flagellar hook-basal body complex protein FliE Pden_2113 2114881 - 2115147 + | export protein FliQ flgF 2115151 - 2115867 + | flagellar basal body rod protein FlgF flgG 2115879 - 2116664 + | flagellar basal body rod protein FlgG flgA 2116664 - 2117080 + | flagellar basal body P-ring biosynthesis protein FlgA flgH 2117091 - 2117843 + | flagellar basal body L-ring protein Pden_2118 2117857 - 2118390 + | hypothetical protein Pden_2119 2120006 - 2119104 - | glucose-1-phosphate thymidylyltransferase TERM 1366 2119493 - 2119460 - G 72 -5.1 -4.49556 | gap 1, opp_overlap 2119460 2119483 CGTCCAGGAAATAAA GCCCGGTGACCG-CGA AAT TCGACGGCGGCTGGGC TGGCTTTTCGATGAT Pden_2120 2120854 - 2120003 - | dTDP-4-dehydrorhamnose reductase Pden_2121 2121888 - 2120851 - | dTDP-glucose 4,6-dehydratase Pden_2122 2122466 - 2121885 - | dTDP-4-dehydrorhamnose 3,5-epimerase Pden_2123 2122642 - 2123313 + | hypothetical protein TERM 1367 2126136 - 2126146 + G 75 -4.6 -4.67011 | overlap 2126130 GCTGGAGGTCTCCGG GTCC GCG GGGC TTTTTGCGTCGGATT Pden_2124 2123332 - 2126172 + | hemolysin-type calcium-binding region Pden_2125 2126921 - 2126169 - | ABC-2 type transporter TERM 1368 2127206 - 2127163 - g 78 -17.2 -2.79302 | overlap 2127177 ACCACCCCCACCACA CCGCCCGGCAGCAAGGCCGG CCAG CCGGCCCAGCAGCCGGCCGC CAGGCAGCAAGGCCC TERM 1369 2127204 - 2127177 - g 72 -13.4 -3.14211 | gap 1, overlap 2127163 ACCGCCCGGCAGCAA GGCCGGCCAGCCG GCC CAGC-AGCCGGCC GCCAGGCAGCAAGGC TERM 1370 2128878 - 2128863 - g 70 -3.2 -4.4261 | gap 1 GGCCGAATACGAAAA GCTGGCC GTG GACC-GC GAATTCGCCGAGGGC Pden_2126 2127145 - 2129103 + | capsule polysaccharide export protein-like TERM 1371 2129275 - 2129326 + G 85 -16.7 -3.53761 | gap 3, overlap 2129272 CGCCGGCACGGTCTC GCCCA-CGGCCGGGCG--GGTGCTGT CGG ACGGCACCATCTCCTGGCCGGTGGGC TTTGCCGGCAGCTTC Pden_2127 2129108 - 2129785 + | ABC transporter related Pden_2128 2129883 - 2130284 + | hypothetical protein TERM 1372 2130640 - 2130676 + G 72 -8.6 -4.10161 | CTTCGACGGGCGCGA GGCGCAG-GGCCGCGCGC TTG GC-CGCCGCTACAGCGCC TTTTGCAGCGTGATC Pden_2129 2130281 - 2130862 + | hypothetical protein Pden_2130 2130871 - 2131728 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Pden_2131 2132297 - 2131809 - | GCN5-related N-acetyltransferase Pden_2132 2133934 - 2132432 - | anthranilate synthase component I TERM 1373 2133582 - 2133562 - G 93 -13.9 -4.18401 | opp_overlap 2133574, overlap 2133563 CGAGATAGCCGAAAA GGCCGGCGG CAC CCGCCGGCA CGCCGTCGGGCATGT TERM 1374 2133581 - 2133563 - G 82 -17.4 -3.10558 | opp_overlap 2133574, overlap 2133562 GAGATAGCCGAAAAG GCCGGCGG CAC CCGCCGGC ACGCCGTCGGGCATG Pden_2133 2135892 - 2133934 - | putative peptidyl-prolyl cis-trans isomerse Pden_2134 2137193 - 2136018 - | hypothetical protein TERM 1375 2136648 - 2136627 - G 76 -2.1 -4.70659 | overlap 2136628 CGCCAGATCGAAAAA GCCGCGCAA GGTT TCGCCCGGA TATTCCGCCCCCGAG Pden_2135 2137916 - 2137203 - | hypothetical protein TERM 1376 2137940 - 2137958 + H 95 -7.3 -5.06414 | overlap 2137945 2137950 CGTCCCGCCCCCTGG CCGCACG CGCCC CGCGCGG TTTTTCTTGCCCCGC TERM 1377 2137945 - 2137957 + H 71 -10.5 -3.63367 | overlap 2137940 2137950 CGCCCCCTGGCCGCA CGCGC CCC GCGCG GTTTTTCTTGCCCCG TERM 1378 2138272 - 2138296 + G 82 -11.4 -4.13014 | gap 1 GTGCCGCTGATCAGG GCGGC-GGCCG AGCG TGGCCTGCCGC TTTTCGGCGTCTGCC Pden_2136 2138071 - 2138661 + | glutamine amidotransferase of anthranilate synthase Pden_2137 2138658 - 2139695 + | anthranilate phosphoribosyltransferase TERM 1379 2139759 - 2139805 + G 70 -12.1 -3.35046 | gap 1, overlap 2139757 GGACTGGCCGGCCAT CGCCGCCCG-GCTGCGCGACCG CGAC TGGCTGCCCGGCCCGGGCCGCG TCTTTGCCGCGCTGG TERM 1380 2139883 - 2139903 + G 75 -9 -4.18018 | gap 1 CCCTATCCCACGCCC GGCCATGCC AACG GGC-TGGCC TTTTCGGTCACGCCG Pden_2138 2139688 - 2140356 + | uracil-DNA glycosylase Pden_2139 2140366 - 2141157 + | indole-3-glycerol-phosphate synthase Pden_2140 2141154 - 2141627 + | molybdenum cofactor biosynthesis protein C TERM 1381 2142757 - 2142795 + G 80 -15.8 -3.2178 | overlap 2142755 CTGCTGATCCGCCCC GCCCAGGATCCCGCCCGC AAG GCGGGCGAGCGCATGGGC TATCTTCTGCTCTGA Pden_2141 2141638 - 2142810 + | molybdenum cofactor synthesis domain-containing protein Pden_2142 2142920 - 2143618 + | LexA repressor Pden_2143 2143743 - 2144900 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 1382 2145352 - 2145313 - g 74 -15.6 -3.01416 | gap 1, opp_overlap 2145306 2145336 2145337 CATCATCGATATAGA CCCGGCGGTGGCGCTGGCC CGC GGCCAG-GCCCGCGGCGGG GTCGAGGATCGGTTC Pden_2144 2144912 - 2145511 + | dTMP kinase TERM 1383 2145546 - 2145517 - g 70 -3.5 -4.46212 | gap 1, overlap 2145519 2145527 CCTGGCATGAGAAAA TCCGAGATG-AGCG ACG CGCCGCTTCCCGAA CCCGACCGCGTCCCC TERM 1384 2145887 - 2145897 + G 75 -4.6 -4.59773 | TGGACGAGATCCGCC GCCT TCA GGGC TTTTTCCACATGAGC TERM 1385 2146239 - 2146252 + G 71 -2.3 -4.63542 | GCTGGCCGTCTATCA GCGCA TCAC TGGGC TTTTTGCCGATTATC Pden_2145 2145508 - 2146605 + | DNA polymerase III subunit delta' Pden_2146 2146618 - 2147415 + | TatD family hydrolase Pden_2147 2147412 - 2148212 + | beta-lactamase domain-containing protein Pden_2148 2148209 - 2149153 + | auxin efflux carrier TERM 1386 2149181 - 2149162 - T 100 -16.4 -4.34402 | opp_overlap 2149162 GCCCTGACATGAAAA CGCCGCCC CGAA GGGCGGCG TTCGGTCTTACCCTG TERM 1387 2149162 - 2149181 + T 89 -16.4 -3.19026 | opp_overlap 2149162 GCCCTGACATGAAAA CGCCGCCC CGAA GGGCGGCG TTCGGTCTTACCCTG Pden_2149 2150142 - 2149189 - | binding-protein-dependent transport systems inner membrane component TERM 1388 2149699 - 2149681 - G 72 -8.8 -4.05004 | CGAGTAGAAGAAGAA CATCCCCG TCG CGGTGATG ATGATCGGCACGATC TERM 1389 2149841 - 2149825 - G 79 -3 -4.83615 | gap 1, opp_overlap 2149825, overlap 2149826 2149827 GATGGTCGAGAAAAA GC-CGAT GATG ATCGAGC TTTTCGCCGCATTCA Pden_2150 2151449 - 2150148 - | binding-protein-dependent transport systems inner membrane component TERM 1390 2151324 - 2151309 - G 79 -4.6 -4.7871 | overlap 2151310 2151313 AAGCACCAGGAAAAA CGCACG ACGA CGCGCA CGACGCGAACTCCGC Pden_2151 2152603 - 2151524 - | polyamine ABC trasnporter, periplasmic polyamine-binding protein TERM 1391 2152658 - 2152701 + r 86 -18.1 -2.52464 | gap 1 TGGCCCGTCAGGGCT C-TGCATGGCCCACGGCGGG TCTGC CCCGCCGCGGGCCGGGCATG TCAGTTCGCCAGCCA Pden_2152 2153784 - 2152702 - | extracellular solute-binding protein TERM 1392 2153340 - 2153324 - G 75 -9.3 -4.15044 | overlap 2153325 GCCGTGTCGAAGAAA TCCGCCG CGC CGGCGGG CTTGGCATCGGGGAA Pden_2153 2154917 - 2153814 - | spermidine/putrescine ABC transporter ATPase subunit Pden_2154 2155688 - 2155122 - | hypothetical protein Pden_2155 2156528 - 2155791 - | short chain dehydrogenase Pden_2156 2158153 - 2156531 - | FGGY-family pentulose kinase Pden_2157 2158913 - 2158182 - | short-chain dehydrogenase/reductase SDR Pden_2158 2159927 - 2158950 - | inner-membrane translocator Pden_2159 2161419 - 2159917 - | ABC transporter related TERM 1393 2160273 - 2160310 + g 75 -4.7 -4.62783 | gap 1, overlap 2160259 CCTGCGCCTTGACCC GGACCTGCGCCATGGCGG TCT CGGTCGCGGC-CAGTTCC TTTTTCAGGTCGATG TERM 1394 2161476 - 2161445 - R 72 -11.5 -3.54459 | gap 1, overlap 2161446 TGAATGGCTGGGAAA TGTCCCGCCCCCGC GACAT GCAGGGGCGGG-CG CGGGGAGGAACCCTT TERM 1395 2161475 - 2161446 - R 75 -15 -2.72461 | gap 1, overlap 2161445 GAATGGCTGGGAAAT GTCCCGCCCCCGC GACAT GCAGGGGCGGG-C GCGGGGAGGAACCCT Pden_2160 2162395 - 2161490 - | periplasmic binding protein/LacI transcriptional regulator TERM 1396 2162436 - 2162422 - R 77 -11.4 -3.73775 | overlap 2162431 CCCATCTGGATGAAA GCAGGC AAA GCCTGC GCGTCTCCGGGCGGC Pden_2161 2163379 - 2162495 - | helix-turn-helix domain-containing protein TERM 1397 2163565 - 2163600 + r 91 -6.7 -5.06414 | opp_overlap 2163537 2163569, overlap 2163568 2163569 ATTTGCTGCATGGCA GAAAGTCCGTGCCGC GTTGCA GCGACACGGGCCTGC TTTTTCTTGAAAACC TERM 1398 2163596 - 2163569 - R 75 -10.5 -3.89346 | opp_overlap 2163568 2163565 2163569, overlap 2163537 GCTGCATGGCAGAAA GTCCGTGCCGC GTTGCA GCGACACGGGC CTGCTTTTTCTTGAA Pden_2162 2165087 - 2163630 - | xylulokinase Pden_2163 2166129 - 2165092 - | alcohol dehydrogenase TERM 1399 2166231 - 2166215 - R 75 -6.5 -4.33928 | opp_overlap 2166215, overlap 2166209 CACTGTAAACAGAAA CCCGCAT CAC ACGCGAG CTTTTGCCCATCAGA TERM 1400 2166309 - 2166279 - R 72 -8.9 -4.11216 | CTTTGACTGCGAAAA CCATGCGCCACAG GGCGG CAGCGACGCACGG CGCGCCAGAACCCGA Pden_2164 2166797 - 2166333 - | GatB/Yqey domain-containing protein TERM 1401 2167827 - 2167795 - g 71 -10.5 -3.72576 | GCCTTGGCCATCAAA TGCTTGCACTGGCGC TTG GCGCCAGCACGATCA AGATGAACCACGGCC Pden_2165 2166966 - 2168114 + | carbamoyl phosphate synthase small subunit Pden_2166 2168202 - 2170298 + | general secretion pathway protein E Pden_2167 2173236 - 2170435 - | (glutamate--ammonia-ligase) adenylyltransferase TERM 1402 2171737 - 2171718 - G 78 -5.7 -4.54477 | gap 1 CGAAAAGCGAGAAAA GCTGCACC CCGGC GG-GCAGC CCGGCCAGAAAGGCG TERM 1403 2172473 - 2172437 - G 71 -10 -3.72695 | gap 1, opp_overlap 2172456 2172457 2172460 2172471, overlap 2172415 AGCTCGCGCAGGAAA CGCGCGCCCGCCGCCAG ATCG CCCGCG-CAGGCGCGTG CCTTGATATAGGCGC TERM 1404 2173477 - 2173446 - H 70 -11.4 -3.32844 | opp_overlap 2173453 2173454, overlap 2173431 TGCTGCACCCCAGAA GCCGGGGGTGCGGC TGAT GCGGCACACCCTGC CTCATGCGCCGCAAT Pden_2168 2173462 - 2174307 + | arginyl-tRNA-protein transferase TERM 1405 2174420 - 2174446 + F 100 -9.3 -5.06816 | CATAGTTTCCCGCGA CGCAGCGGGGG CGGCT TCCCCGCCGTG TTTTTGTTCAGAGAT Pden_2169 2174500 - 2176227 + | acetolactate synthase 3 catalytic subunit ilvH 2176242 - 2176802 + | acetolactate synthase 3 regulatory subunit Pden_2171 2177149 - 2176808 - | hypothetical protein TERM 1406 2177081 - 2177107 + g 81 -3.7 -4.8622 | AAGATAGGCCAGCGC GCCGTGATC CTCGCACCA GATCACAGC TTTTTCCTTGGCCGG Pden_2172 2178204 - 2177401 - | peptidase M48, Ste24p Pden_2173 2178277 - 2178528 + | hypothetical protein Pden_2174 2178773 - 2178525 - | hypothetical protein TERM 1407 2178838 - 2178803 - H 100 -8.8 -5.00616 | opp_overlap 2178804, overlap 2178804 GCGCGCGGCAAAAAA GGCAATGCCGGCTGGC ATAG GCCGGCCCGCACCGCT ATCTGGAAGGCAGGA TERM 1408 2178837 - 2178804 - H 77 -12.3 -3.60048 | opp_overlap 2178804, overlap 2178803 CGCGCGGCAAAAAAG GCAATGCCGGCTGGC ATAG GCCGGCCCGCACCGC TATCTGGAAGGCAGG Pden_2175 2178879 - 2179445 + | nitroreductase Pden_2176 2179445 - 2180137 + | hypothetical protein Pden_2177 2180363 - 2180103 - | hypothetical protein Pden_2178 2180767 - 2180363 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1409 2180677 - 2180696 + g 70 -4.2 -4.4261 | opp_overlap 2180641, overlap 2180680 CGTCCTGCGGCGCAC CGACCTTG GCGC CAAGGCTG TTTTCATATTGCGCG Pden_2179 2180904 - 2181632 + | response regulator receiver protein Pden_2180 2182377 - 2181637 - | GCN5-related N-acetyltransferase Pden_2181 2183579 - 2182398 - | hypothetical protein Pden_2182 2184956 - 2183589 - | hypothetical protein aspS 2186858 - 2185083 - | aspartyl-tRNA synthetase TERM 1410 2186845 - 2186860 + g 76 -2.6 -4.67234 | gap 1 CCGCAGGTATGGCTG CGAT-AG GCG CTCATCG TTTTTCCCCTTGCGT Pden_2184 2187575 - 2186919 - | abortive infection protein Pden_2185 2188333 - 2187551 - | glycoside hydrolase family protein TERM 1411 2188502 - 2188514 + H 76 -6.2 -4.56597 | GGCGACAGGGATCGG GGGC CTTGA GCCC TTTTTGCGGGCAGAC TERM 1412 2188746 - 2188764 + G 71 -3 -4.56597 | opp_overlap 2188741 2188749 2188750, overlap 2188748 2188749 TAAGGAAGCAGGGCA TAATCGCG GCC CGCGGATG TTTTTCCGAACCGGG Pden_2186 2188538 - 2188897 + | hypothetical protein TERM 1413 2188895 - 2188908 + T 82 -3.9 -4.99134 | opp_overlap 2188891 GTTCTGAAAAAGGGC TGAAA CCCG TTTCA TTTTTCATTTCCGAT Pden_2187 2190346 - 2188967 - | D-lactate dehydrogenase (cytochrome) Pden_2188 2191380 - 2190412 - | hypothetical protein Pden_2189 2191536 - 2192510 + | cobalt chelatase, pCobS small subunit Pden_2190 2192507 - 2192944 + | hypothetical protein TERM 1414 2194892 - 2194859 - g 73 -10.2 -3.89524 | gap 1, opp_overlap 2194888, overlap 2194877 AGCCGATCCCAGAAA GCGCGCCC-GCGCCA TGAAC CAGCGCCGGGCGGGC TGAACCTGTTCTTTC Pden_2191 2193033 - 2194895 + | cobalt chelatase, pCobT subunit Pden_2192 2194934 - 2196247 + | glycosyl transferase, group 1 TERM 1415 2197093 - 2197130 + G 74 -11.2 -3.70674 | opp_overlap 2197084, overlap 2197091 GACCAATCTCGCCGG CCCGGTCCGGGTCG ACCCTGCCAG CGCGCCGGACCGGG TGTTTTCGCTAATCG TERM 1416 2198049 - 2198019 - g 74 -11 -3.72576 | GGGTGTGGGAGGAAA TCTCGCCCCTGGTC GAA GGCCAGGTGCGCGA CTGGCTCCATCGCGC Pden_2193 2196275 - 2198092 + | peptidase M24 TERM 1417 2198191 - 2198230 + T 90 -15.8 -3.53012 | opp_overlap 2198191 TCTCTGTTCCCCAAA TACTCATACGGCCGTGCC CGGA GGCGCGGTTGCATGAGTA TTTGGGGAACAGAGA TERM 1418 2198230 - 2198191 - T 72 -11.4 -3.53012 | opp_overlap 2198191 TCTCTGTTCCCCAAA TACTCATACGGCCGTGCC CGGA GGCGCGGTTGCATGAGTA TTTGGGGAACAGAGA Pden_2194 2199329 - 2198283 - | hypothetical protein TERM 1419 2198669 - 2198622 - G 79 -15.4 -3.35197 | gap 1 CTCGAGATAGAGGAA GGCGCCGAAGCCGCCGCGCGCCA TGT CGGCGGGCTGCGG-TGCGCCGCC CCAACGGTCGAGCAC Pden_2195 2200671 - 2199445 - | hydroxypyruvate reductase Pden_2196 2201621 - 2200671 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_2197 2201962 - 2201621 - | export-related chaperone CsaA Pden_2198 2202762 - 2201959 - | pyrroline-5-carboxylate reductase Pden_2199 2203301 - 2202801 - | hypothetical protein TERM 1420 2203959 - 2203928 - g 95 -17.2 -3.68222 | CGTGAACCCGAACAA CCCGGACGGGCGCG AGTT CACGCCCGCACGGG TCGCCGCCCTCGCCG Pden_2200 2203527 - 2204489 + | aminotransferase, class I and II Pden_2201 2205516 - 2204473 - | phosphoribosylaminoimidazole carboxylase ATPase subunit Pden_2202 2206006 - 2205509 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 1421 2205917 - 2205886 - G 74 -12.2 -3.54424 | TGCGATGGGCGGAAA CGATCCGCGCCTCG TAAC CGATGCGCAGCTCG TCCAGGATGGCCGCG Pden_2203 2206277 - 2206059 - | hypothetical protein TERM 1422 2206895 - 2206944 + G 73 -12.7 -3.53012 | gap 1, opp_overlap 2206867 2206868, overlap 2206885 CGCGACCCAGGCGGC GCGCGGCTCGGC-GCTGCTGGCCG GGT TGCTCGGCGGCAGCCGGGTCGAGC TTTCGGACGACCGCG Pden_2204 2206440 - 2207036 + | hypothetical protein TERM 1423 2207306 - 2207316 + G 71 -2.4 -4.56597 | overlap 2207296 2207293 TTCCGCATCACGCTG GCCG TGG CGGG TTTTTCCGACGACGA Pden_2205 2207159 - 2207569 + | heat shock protein Hsp20 Pden_2206 2207583 - 2207810 + | hypothetical protein Pden_2207 2208787 - 2207975 - | binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein TERM 1424 2208626 - 2208614 - G 73 -10.5 -3.85698 | CGCCTGGGTCAGAAA GCCGC GCA GCGGC AGGAACCCACCGCCC Pden_2208 2209823 - 2208807 - | thioredoxin reductase TERM 1425 2209580 - 2209554 - G 81 -12.2 -3.92373 | overlap 2209556 CACCGTATCGACAAA GATGCGCGCGCC CAT GGCGCGGGCATG CGCCTCCATCCTGAC TERM 1426 2209578 - 2209556 - G 83 -14.8 -3.5511 | overlap 2209554 CCGTATCGACAAAGA TGCGCGCGCC CAT GGCGCGGGCA TGCGCCTCCATCCTG Pden_2209 2209988 - 2210488 + | AsnC family transcriptional regulator TERM 1427 2210689 - 2210705 + G 72 -3.5 -4.55689 | overlap 2210691 CCTTTGTCTCTCTTG GCCAGCG AAG CGCAGTC TTTTGTATGCGTGGT Pden_2210 2210569 - 2211006 + | hypothetical protein Pden_2211 2211867 - 2211103 - | hypothetical protein TERM 1428 2211228 - 2211178 - G 79 -3.1 -4.95155 | gap 1, overlap 2211180 GCGATAGGAGAAAAA GCGGTCCGGGTCGGAATAGGTGCA ATGC CGCGTCCATTCCGCCTCG-ACCCC GGCCTCGCGCAGCCG Pden_2212 2212918 - 2211851 - | hypothetical protein Pden_2213 2213805 - 2212915 - | prolipoprotein diacylglyceryl transferase Pden_2214 2213932 - 2214186 + | hypothetical protein Pden_2215 2214481 - 2215506 + | RluA family pseudouridine synthase Pden_2216 2215573 - 2216478 + | RNA polymerase factor sigma-32 TERM 1429 2216683 - 2216716 + F 84 -8.8 -4.56597 | gap 1, overlap 2216685 GACCGCCCCATGCAG CAGCCC-GTTTGCGC GGCTG GCGCAGGCCGGGCGG TTTTTCCGGCAGCCA Pden_2217 2216845 - 2217864 + | hypothetical protein Pden_2218 2218921 - 2217872 - | sporulation domain-containing protein TERM 1430 2218859 - 2218833 - G 74 -12.2 -3.59979 | TGCCGCGACGGGAAA TCGTCCGGCGGA TCC TCGGCCGGGCGA AGCCCCTGCGCCAGC Pden_2219 2219626 - 2218991 - | uracil phosphoribosyltransferase Pden_2220 2220591 - 2219623 - | adenosine deaminase TERM 1431 2219686 - 2219671 - G 79 -11.8 -4.07568 | GGTCTGGTCGCAAAA GGCCGC ATCG GCGGCC CAGAGGTTCATCTGC TERM 1432 2220533 - 2220572 + g 81 -7 -4.64334 | gap 1, opp_overlap 2220533, overlap 2220534 AGCGCCCGGATCAGA CCGAGCGGCGCC-GCGCCT TCC AGATGCAGGTGCAGCTCGA TTTTCTTCAGCGATT Pden_2221 2221772 - 2220588 - | phosphopentomutase TERM 1433 2221173 - 2221152 - G 77 -15.1 -3.14132 | CTCGGCGCCCATGAA GGGCCGGGC GATG ACCCGGCCC ACGCGCATCGGATGG TERM 1434 2221639 - 2221689 + g 70 -14.7 -2.73364 | gap 1, overlap 2221638 GGCATCCGCAGCGGC CGCGCCTGCGCGATATGGGCGACG GTAT TGGCGCCGGTATCGGGCAGGC-CG TCGTTGAAATAGGCG deoA 2223061 - 2221769 - | thymidine phosphorylase Pden_2223 2223453 - 2223058 - | cytidine deaminase TERM 1435 2225083 - 2225067 - g 71 -11.5 -3.65902 | CCGAGGTGATCGAAA GGCGCGC CGA ACGCGCC GGCCTGCCGATCCGC Pden_2224 2223617 - 2225896 + | malic enzyme TERM 1436 2225948 - 2225909 - f 72 -13.4 -3.09803 | opp_overlap 2225904 TAAGCGCACGGAACA TGGGGCGGGGCGGCGG TGATTCTG CCGCCGCCCCTGCCCG GCCGGACTTCATTTT Pden_2225 2226148 - 2228052 + | AMP-dependent synthetase and ligase TERM 1437 2228134 - 2228101 - T 80 -12.3 -3.81146 | opp_overlap 2228093 2228104, overlap 2228104 TTGGGGAACGAAGAA GCAGGGGCGCCGCGT ATGG AAGCGGCGCCCCTTG TCGTCAGTCGATTTG TERM 1438 2228104 - 2228131 + T 93 -18.4 -3.42699 | opp_overlap 2228101 2228104, overlap 2228093 GGGAACGAAGAAGCA GGGGCGCCGCGT ATGG AAGCGGCGCCCC TTGTCGTCAGTCGAT TERM 1439 2228131 - 2228104 - T 89 -18.4 -2.98947 | opp_overlap 2228104 2228093, overlap 2228101 GGGAACGAAGAAGCA GGGGCGCCGCGT ATGG AAGCGGCGCCCC TTGTCGTCAGTCGAT Pden_2226 2229469 - 2228138 - | 3-phosphoshikimate 1-carboxyvinyltransferase trmB 2230248 - 2229547 - | tRNA (guanine-N(7))-methyltransferase TERM 1440 2229858 - 2229842 - G 70 -3.6 -4.41548 | GGATAGTTCAGAAAA GCCTTG TCGAT CGAGGC ATCGGGCAGCACATC Pden_2228 2231946 - 2230270 - | beta-lactamase domain-containing protein Pden_2229 2232718 - 2231939 - | pantothenate kinase Pden_2230 2233480 - 2232722 - | biotin--acetyl-CoA-carboxylase ligase TERM 1441 2233044 - 2233012 - G 71 -11.1 -3.64703 | CGCCTTGCACGGAAA CCGGCGGGGTGGCAC CGG GCTCGACCGCGCCGG CATCGGGCGCGGCGG Pden_2231 2234972 - 2233473 - | NADH dehydrogenase subunit N Pden_2232 2236523 - 2234982 - | NADH dehydrogenase subunit M Pden_2233 2238636 - 2236525 - | NADH dehydrogenase subunit L Pden_2234 2238948 - 2238643 - | NADH-ubiquinone oxidoreductase, chain 4L Pden_2235 2239647 - 2239048 - | NADH dehydrogenase subunit J TERM 1442 2239594 - 2239543 - G 79 -14.5 -3.25823 | gap 1, overlap 2239524 2239563 2239568 2239572 CGCCGCGGACAGGAA GGCCAGGATCAGCCACAACACCGA ATGCA CCGG-GTTGCGGCCGATCACGACC ATGAACCCGGCGACG Pden_2236 2240051 - 2239647 - | carboxymuconolactone decarboxylase Pden_2237 2240440 - 2240048 - | carboxymuconolactone decarboxylase Pden_2238 2240928 - 2240437 - | NADH dehydrogenase subunit I Pden_2239 2242151 - 2241114 - | NADH dehydrogenase subunit H Pden_2240 2242937 - 2242170 - | hypothetical protein Pden_2241 2244967 - 2242943 - | NADH dehydrogenase subunit G Pden_2242 2245813 - 2245247 - | hypothetical protein Pden_2243 2247115 - 2245820 - | NADH dehydrogenase I subunit F TERM 1443 2247018 - 2247041 + g 72 -4.4 -4.56597 | overlap 2247014 CGCTGGATGATCGCG GCGGTGCCGT CCCA ATGGCCGCGC TTTTTCGCGCCGGCC Pden_2244 2247383 - 2247120 - | hypothetical protein Pden_2245 2248027 - 2247383 - | hypothetical protein Pden_2246 2248771 - 2248052 - | NADH dehydrogenase subunit E Pden_2247 2250009 - 2248771 - | NADH dehydrogenase subunit D Pden_2248 2250689 - 2250063 - | NADH dehydrogenase subunit C Pden_2249 2251220 - 2250693 - | NADH dehydrogenase subunit B Pden_2250 2251582 - 2251217 - | NADH dehydrogenase subunit A Pden_2251 2252132 - 2251761 - | hypothetical protein uvrA 2255008 - 2252129 - | excinuclease ABC subunit A Pden_2253 2255154 - 2255507 + | glutathione-dependent formaldehyde-activating, GFA moaA 2256538 - 2255504 - | molybdenum cofactor biosynthesis protein A TERM 1444 2256932 - 2256883 - g 71 -9.7 -3.73224 | gap 1, overlap 2256868 2256884 CCACGCGCGAGCAAA GGGTCGCGGCCGCCGCCCCGCCCA CGA CGGG-GGAGCGCCGGCTGGGCACC ACCATCGCCTCGCTG Pden_2255 2256663 - 2257166 + | hypothetical protein Pden_2256 2257858 - 2257154 - | hypothetical protein TERM 1445 2257978 - 2257950 - H 100 -16.7 -4.32804 | overlap 2257939 AGAAGCAATGGAAAA GGGGCGGCGCC AGAGAGA GACGCCGCCCC AGTCGAATACGCCAA TERM 1446 2258693 - 2258728 + G 71 -11.8 -3.55444 | gap 1, opp_overlap 2258669 2258668, overlap 2258683 CCATCGCCGCCGGCT GCGGCTTCGTCGGCCGT CCC GCCGCCGA-GACGCCGC TTTCGGCCCTGGCGC Pden_2257 2258143 - 2259615 + | succinic semialdehyde dehydrogenase TERM 1447 2259631 - 2259651 + T 89 -18.3 -3.04461 | opp_overlap 2259631 CCGGCCATGAAAAAA CCCCGGAGC CGG GCTCCGGGG TCTTCGGGATCAGTG TERM 1448 2259651 - 2259631 - T 100 -18.3 -5.14563 | opp_overlap 2259631 CCGGCCATGAAAAAA CCCCGGAGC CGG GCTCCGGGG TCTTCGGGATCAGTG Pden_2258 2260407 - 2259661 - | hypothetical protein TERM 1449 2260129 - 2260144 + g 72 -6 -4.26076 | GGACAGCGGGGTGTA GCGCGG GCCG CGGCGC TTTTCCTCGCCCTCG Pden_2259 2260568 - 2261188 + | ribonuclease T2 TERM 1450 2261809 - 2261820 + G 76 -7.2 -4.26076 | opp_overlap 2261795 2261796, overlap 2261797 AGCCGGCCTGGCTGG CCGC CGGC GCGG TTTTCGTCACCGTGG Pden_2260 2261370 - 2261852 + | hypothetical protein Pden_2261 2262172 - 2261861 - | TM2 domain-containing protein TERM 1451 2263950 - 2263917 - g 72 -6.5 -4.2828 | CTTCATCGACCAAAA GGCGGCCGTGCTG TTCGGCGG CGGCTCGGACGCC GTGCGAATCGAAAAC TERM 1452 2264027 - 2264048 + G 75 -8.6 -4.13014 | GCCTGTTGGCGGCGG CGGCGCGC AACCAG GCGCGCGG TTTTGCCGATCTGGC pheT 2262355 - 2264742 + | phenylalanyl-tRNA synthetase subunit beta Pden_2263 2264921 - 2265478 + | hypothetical protein TERM 1453 2265621 - 2265656 + T 100 -14 -4.2349 | gap 1, opp_overlap 2265628, overlap 2265622 2265628 ACTCTCGGGCTGGCC CCGAAAACGCCCCGAGC TAT GCCCGGGGCGTTT-CGC TTTTCACTCTGCCCC TERM 1454 2265622 - 2265655 + T 88 -17.5 -3.13773 | gap 1, opp_overlap 2265628, overlap 2265621 2265628 CTCTCGGGCTGGCCC CGAAAACGCCCCGAGC TAT GCCCGGGGCGTTT-CG CTTTTCACTCTGCCC TERM 1455 2265628 - 2265650 + T 93 -16.2 -3.9373 | opp_overlap 2265628, overlap 2265622 2265621 GGCTGGCCCCGAAAA CGCCCCGAGC TAT GCCCGGGGCG TTTCGCTTTTCACTC TERM 1456 2265650 - 2265628 - T 100 -18.4 -4.07568 | opp_overlap 2265628 2265622 2265621 GGCTGGCCCCGAAAA CGCCCCGAGC TAT GCCCGGGGCG TTTCGCTTTTCACTC Pden_2264 2266376 - 2265660 - | glutathione S-transferase domain-containing protein Pden_2265 2266459 - 2266896 + | large conductance mechanosensitive channel protein TERM 1457 2266917 - 2266947 + F 81 -16.8 -2.70932 | opp_overlap 2266919, overlap 2266920 2266921 2266939 2266940 TGCCATTCGGCAAGG CAGCGGCGCGGCCC CCC GGGTCGCGCCCTTG TCGTTCCGGCCGGGC TERM 1458 2266920 - 2266944 + F 86 -14.9 -3.50853 | opp_overlap 2266919, overlap 2266917 2266921 2266939 2266940 CATTCGGCAAGGCAG CGGCGCGGCCC CCC GGGTCGCGCCC TTGTCGTTCCGGCCG TERM 1459 2266921 - 2266943 + F 87 -18.4 -2.70298 | opp_overlap 2266919, overlap 2266920 2266917 2266939 2266940 ATTCGGCAAGGCAGC GGCGCGGCCC CCC GGGTCGCGCC CTTGTCGTTCCGGCC TERM 1460 2267028 - 2267009 - f 86 -10.6 -4.26076 | CTATTGTCAGGAAAA CCGGCGCC GCCC GGCGCCTG CGAGACAGGGATCGC Pden_2266 2267048 - 2267509 + | AsnC family transcriptional regulator TERM 1461 2267539 - 2267512 - T 95 -15.7 -4.07568 | opp_overlap 2267517, overlap 2267517 CCTGCCGGTCTAAAA GAAAACCCCCG GCAATG CGGGGGTTTTC CTGAACCGATGTGGT TERM 1462 2267517 - 2267534 + T 81 -9.8 -4.25283 | opp_overlap 2267512 2267517 CGGTCTAAAAGAAAA CCCCCG GCAATG CGGGGG TTTTCCTGAACCGAT TERM 1463 2267534 - 2267517 - T 100 -9.8 -5.07652 | opp_overlap 2267517, overlap 2267512 CGGTCTAAAAGAAAA CCCCCG GCAATG CGGGGG TTTTCCTGAACCGAT TERM 1464 2267568 - 2267586 + T 82 -3.8 -5.00616 | gap 1, overlap 2267565 2267564 GTCGCTCGTCTTACA GCGC-GC CTTCAC GCTGCGC TTTTTTGCGCGCCAG rpsU 2267769 - 2267563 - | 30S ribosomal protein S21 Pden_2268 2267894 - 2268580 + | rpsU-divergently transcribed protein TERM 1465 2269281 - 2269293 + G 70 -9.1 -3.86897 | CGATGACGGCCGGCT GGCGA TGA TCGCC TTTCTCGCCGGTCCC Pden_2269 2268592 - 2269569 + | alcohol dehydrogenase Pden_2270 2270759 - 2269677 - | phenylalanyl-tRNA synthetase, alpha subunit Pden_2271 2271162 - 2270818 - | arsenate reductase Pden_2272 2272555 - 2271194 - | cytochrome P450 TERM 1466 2272268 - 2272220 - G 82 -14.7 -3.53091 | ATGGCGCTGCGCAAA GGCCG-GGGCGGCGGCA-AGGCGCT GCC AGCGCCAATGC-G-CGCCCTCGGCC ACGAACATCGAATTG TERM 1467 2272662 - 2272650 - R 88 -9.1 -4.68593 | opp_overlap 2272650 GTGAGGAGCGAAAAA GGTCC AGC GGACC TTTTTCAGCGACGAA TERM 1468 2272650 - 2272662 + r 86 -9.1 -4.56597 | opp_overlap 2272650 GTGAGGAGCGAAAAA GGTCC AGC GGACC TTTTTCAGCGACGAA TERM 1469 2272765 - 2272745 - R 100 -11.8 -5.14563 | opp_overlap 2272727 2272745 CGGGCCATGAAAAAA CCCGCGCC ATTCG GACGCGGG TTCTGTCAGTCCAGC rplT 2273153 - 2272794 - | 50S ribosomal protein L20 rpmI 2273366 - 2273166 - | 50S ribosomal protein L35 Pden_2275 2273864 - 2273475 - | hypothetical protein TERM 1470 2273519 - 2273542 + g 71 -11.6 -3.65199 | overlap 2273519 CAGCCTCTGGCGCGT CCGCAGCCGG GGCA TCGGCGGCGG TTTCCGTCGCGGCTT Pden_2276 2275350 - 2273905 - | pyruvate kinase TERM 1471 2275138 - 2275114 - G 71 -11.3 -3.57144 | CGGTCCATCGGCAAA GGTGCCGACGC GCA GCTTCGGCCCC TGCAGGTCGGCCAGC Pden_2277 2275471 - 2276211 + | N-formylglutamate amidohydrolase TERM 1472 2276509 - 2276528 + T 100 -12.8 -5.36441 | opp_overlap 2276508 2276507, overlap 2276514 AACCAGTTGGAAAGC GCCGGGCC TTCG GGTCCGGC TTTTTTATGTGCCGC Pden_2278 2277200 - 2276961 - | hypothetical protein Pden_2279 2277767 - 2277297 - | hypothetical protein Pden_2280 2277814 - 2278233 + | hypothetical protein Pden_2281 2278522 - 2279088 + | Arc domain-containing protein Pden_2282 2280549 - 2279485 - | TPR repeat-containing protein TERM 1473 2280564 - 2280543 - G 83 -5.1 -4.86731 | overlap 2280547 TTGCCGTAAATAAAA TCAGCATCC TTTC GGATGACGA ACACTCAATGAAATG Pden_2283 2281010 - 2280660 - | hypothetical protein TERM 1474 2281557 - 2281539 - H 88 -17.4 -3.14931 | CTGATGGCGCATGAA GCCGCGGC CCT GCCGCGGC GCGAAACCGGAGATC Pden_2285 2281578 - 2282513 + | substrate-binding region of ABC-type glycine betaine transport system Pden_2286 2282514 - 2284010 + | sulfatase Pden_2287 2284145 - 2284726 + | hypothetical protein Pden_2288 2284766 - 2285524 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 1475 2285994 - 2285984 - g 71 -2.4 -4.56597 | GCGGGTCTGGAAAAA GGTG ATG CGCC TGGGCTACCCGGATT Pden_2289 2285541 - 2286299 + | glutathione S-transferase domain-containing protein Pden_2290 2286280 - 2287323 + | hypothetical protein TERM 1476 2287443 - 2287454 + G 72 -3.6 -4.63184 | overlap 2287421 CTGGGCGTGCCGCCG GGCC AGCA GGTC TTTTTCCGCTCGCTT Pden_2291 2287320 - 2288261 + | hypothetical protein Pden_2292 2289668 - 2288274 - | hypothetical protein Pden_2293 2291365 - 2289665 - | glycosyl transferase family protein Pden_2294 2292387 - 2291362 - | hypothetical protein TERM 1477 2291752 - 2291731 - G 81 -7.9 -4.56597 | gap 1, overlap 2291732 GTCGTCGGCGAAAAA GGCCCGGGCC CGA GGCCCGC-CC TGGACCCACAGATTG Pden_2295 2293653 - 2292415 - | glycosyl transferase, group 1 TERM 1478 2292689 - 2292639 - G 70 -14.6 -2.70932 | gap 1 GGGGCGTGGCAAGGA CCGGGATGCCGCGGCCCGCCGCC TCGGTC AGCGGCAGGCCGAAGC-CCTCGG CCCGGCTGGGCATCA Pden_2296 2294641 - 2293643 - | UDP-glucose 4-epimerase Pden_2297 2295537 - 2294647 - | nucleotidyl transferase Pden_2298 2296892 - 2295684 - | glycosyl transferase family protein TERM 1479 2296531 - 2296474 - G 78 -16.3 -3.01712 | gap 1 GTGGTTTCGGCAATA TTCAGCGGCAAGGTCCGGCCCGAGCG CGTGATC CGCTCGGCCCGGACCT-GCCAGCGCA GCCCGTCCGGGCCGC Pden_2299 2297692 - 2296892 - | 3-deoxy-manno-octulosonate cytidylyltransferase Pden_2300 2298494 - 2297697 - | 3'(2'),5'-bisphosphate nucleotidase Pden_2301 2298636 - 2299457 + | ABC-2 type transporter TERM 1480 2299505 - 2299547 + F 70 -4.7 -4.4009 | gap 2, overlap 2299507 2299508 CGCGCCGGGCCTTGC CCGGCCG-C-GCGCCGGCG CCCCGAC CGCAGGCGCCGACGGCATG TTTTCTGCCGTCCGG TERM 1481 2299641 - 2299607 - f 76 -14.3 -3.1637 | gap 1, opp_overlap 2299627 2299628 ATATAGGCCCATGAA GTGCGAAGGGG-CCCT GAAC AGGGTCCCCCTCGCTC AATCCAGGGATCGGG Pden_2302 2299715 - 2301631 + | chaperone protein DnaK TERM 1482 2301649 - 2301683 + F 95 -15 -4.15044 | gap 1, opp_overlap 2301647, overlap 2301650 GCGATGCGAACCATC CGGCCGGCCCGATGC AGACCC GCA-CGGGCCGGCCA TTTCTTGAAAGACCC TERM 1483 2301650 - 2301682 + F 89 -18.5 -3.08812 | gap 1, opp_overlap 2301647, overlap 2301649 CGATGCGAACCATCC GGCCGGCCCGATGC AGACCC GCA-CGGGCCGGCC ATTTCTTGAAAGACC TERM 1484 2302034 - 2302056 + G 73 -12.7 -3.40403 | gap 1, opp_overlap 2302029 GGCGACATGATGGGC CGCCGCGCCG GTGG CGGCG-GGCG TTCTCGTGCCAGCCG Pden_2303 2301713 - 2302867 + | chaperone protein DnaJ TERM 1485 2302897 - 2302857 - f 80 -11.8 -3.72576 | opp_overlap 2302871 GGTTCTGGGACGAAA TGAAGGGCTGATCGGGCG TTAAC CGCCTGTTCACCCCTCCA TGCCAGTCTGGCGGC radC 2302913 - 2303704 + | DNA repair protein RadC Pden_2305 2303887 - 2304474 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Pden_2306 2304485 - 2305807 + | cytochrome b/b6 domain-containing protein TERM 1486 2305999 - 2305951 - g 70 -12.1 -3.29947 | overlap 2305954 GAGCTATCATACGAA CGAGGCCGCTCCCGCGGCTGCCG ACA CGGCACCGGCGGCGGAAGCCGCG GACGAGCCGGCAGCG TERM 1487 2306007 - 2305954 - g 70 -15.1 -2.82519 | gap 1, overlap 2305951 CTATCATACGAACGA GGCCGCTCCCGCGGCTGCCGACACGG CAC CGGCGGCGGAAGCCGCGGACG-AGCC GGCAGCGGAAGAGGC Pden_2307 2305820 - 2307172 + | cytochrome c1 TERM 1488 2307212 - 2307195 - f 84 -14.1 -3.57144 | opp_overlap 2307195 2307208 GTCCTGATCCTGAAA CGCGCCC TCCG GGGCGCG TTTTTCTTTGCCGGG TERM 1489 2307195 - 2307212 + F 100 -14.1 -5.27335 | opp_overlap 2307195, overlap 2307208 GTCCTGATCCTGAAA CGCGCCC TCCG GGGCGCG TTTTTCTTTGCCGGG TERM 1490 2307766 - 2307735 - g 78 -13.6 -3.57263 | gap 1, opp_overlap 2307735 2307732 2307731, overlap 2307721 ACCTGCAGGCCGAAA CCGCCGCGCTGGCCC GTC GGGCGGGCGCG-CGG GTGATCTATTCCGCC Pden_2308 2307311 - 2308180 + | ribokinase Pden_2309 2308220 - 2309023 + | peptidase S49 Pden_2310 2309020 - 2309130 + | hypothetical protein Pden_2311 2309127 - 2309897 + | short chain dehydrogenase TERM 1491 2311023 - 2311038 + G 82 -6.8 -4.72272 | CATGGAGGGCGGGCA GGCCTG CGTG CAGGTC TTTTTCATCCGCGGC TERM 1492 2311270 - 2311230 - g 72 -8.2 -4.07568 | gap 2, overlap 2311231 GGCGCTGTCGGAAAA GGCCGGGCGCAAGGTCACGC TGG GCGTG-CCCCG-GCGCGGCG AAAAGGCCGAACTGG TERM 1493 2311335 - 2311293 - g 72 -8.2 -4.09739 | overlap 2311316 2311317 CGAACTGGTGGAAAA CGCCCTGCGCAACGCCCG CGAAAGC CTGGCGCGGCGCATGTCG GAAAGCGCCGCGCAG uvrC 2310199 - 2312070 + | excinuclease ABC subunit C Pden_2313 2312083 - 2312514 + | hypothetical protein Pden_2314 2313147 - 2312521 - | hypothetical protein TERM 1494 2312844 - 2312830 - G 71 -11.4 -3.59262 | overlap 2312841 GCCGACATGGGTAAA GGCGTC ATA GACGCC AAAGCCGCGCACCAG Pden_2315 2314460 - 2313159 - | hypothetical protein Pden_2316 2315241 - 2314465 - | ABC transporter related TERM 1495 2314773 - 2314795 + g 79 -11.9 -3.96148 | opp_overlap 2314755 CGGGGTCCAGCGCCA GCGCGCGCG CCAGC CCCGCGCGC TTTCTCATGCCGCCG Pden_2317 2316332 - 2315238 - | hypothetical protein TERM 1496 2316415 - 2316393 - R 91 -16.3 -3.54424 | CCGGAGTTTGTCAAA TCCGGCCGG CACTC CCGGCCGGA CGCTGTGGCCGATCC Pden_2318 2317693 - 2316776 - | LysR family transcriptional regulator Pden_2319 2317784 - 2318647 + | 5,10-methylenetetrahydrofolate reductase Pden_2320 2319826 - 2318675 - | hypothetical protein Pden_2321 2321031 - 2319868 - | Orn/DAP/Arg decarboxylase 2 Pden_2322 2321165 - 2321596 + | AsnC family transcriptional regulator Pden_2323 2322159 - 2321563 - | putative methyltransferase TERM 1497 2321954 - 2321929 - G 73 -10.3 -3.91897 | overlap 2321898 2321930 GCCGTCATCGACAAA GGCCACGCGGG CAGC CCCGCGCGACA GCGCCTCGAGCCCCA Pden_2324 2323352 - 2322156 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_2326 2324561 - 2323848 - | HxlR family transcriptional regulator Pden_2325 2323408 - 2323914 + | redoxin domain-containing protein TERM 1498 2324738 - 2324704 - g 73 -7 -4.14257 | opp_overlap 2324714, overlap 2324706 2324708 GCGAACAAGCAGAAA TACATCGACATGGCCC AGG GGGCCTGGTCCATGTT CAAGCGCTATGGCGC Pden_2327 2324650 - 2325006 + | hypothetical protein TERM 1499 2325066 - 2325086 + F 75 -6.7 -4.3739 | TCCACCGCCAAGGGC GGGCTCGAC GCG GCCGAGGCC TTTTATGGCAAGGTC Pden_2328 2325203 - 2325805 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_2329 2325802 - 2326437 + | YceI family protein Pden_2330 2326441 - 2327073 + | glutathione S-transferase domain-containing protein TERM 1500 2327235 - 2327260 + F 70 -6.2 -4.27316 | ATGGCGCGACGGTGC TGCCGGAA AGCGCGATGG TTCCGGCA TTTTCCCTTCAAACA TERM 1501 2329845 - 2329825 - g 74 -11.1 -3.73953 | AGTATCGCGAGGAAA CCCAGGCCA CCA TGGGCTGGG TGCTGGACCAGTGCT valS 2327364 - 2330456 + | valyl-tRNA synthetase Pden_2332 2331211 - 2330519 - | cobalamin (vitamin B12) biosynthesis CbiX protein Pden_2333 2331767 - 2331204 - | hypothetical protein Pden_2334 2331856 - 2332365 + | NnrU family protein Pden_2335 2333365 - 2332349 - | FAD dependent oxidoreductase TERM 1502 2332504 - 2332485 - G 74 -15 -3.05384 | CCGTTGGCGACGTAA TGGCCGGG CCGT CCCGGCCA AGGGCCGACCAGCGG Pden_2336 2333413 - 2334069 + | hypothetical protein Pden_2337 2334782 - 2334066 - | rhomboid family protein TERM 1503 2334505 - 2334495 - G 72 -8.2 -4.08571 | overlap 2334486 GTAGAAGACCAGAAA GCCG AGC CGGC CCATCTGGTCCTCCA TERM 1504 2335222 - 2335189 - g 91 -11.7 -4.58283 | gap 1 CAACGGCCCGAAAAA GACCGCCTTCTACACC ACC GGCGCCGA-GGCGGTC GAGAACGCGGTCAAG Pden_2338 2334887 - 2336155 + | 4-aminobutyrate aminotransferase TERM 1505 2336263 - 2336236 - T 73 -9.1 -3.92659 | gap 1, opp_overlap 2336253, overlap 2336252 TTTGGAAAACGGAAA GAGC-CGCCACG CAAAC CGCGGCGCGCCC GACGCTTCTTCGTCC Pden_2339 2337399 - 2336443 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha Pden_2340 2337908 - 2337468 - | molybdopterin biosynthesis MoaE TERM 1506 2337545 - 2337572 + g 71 -11.2 -3.54543 | GGCCATCCGGGCCGA TCTCGCGCTTCC AGAA GGGCGCGCGGGA TTTCAGCCAGTCCAT Pden_2341 2338161 - 2337910 - | molybdopterin converting factor, subunit 1 Pden_2342 2338780 - 2338151 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Pden_2343 2339280 - 2338840 - | MerR family transcriptional regulator TERM 1507 2339911 - 2339965 + G 73 -7.6 -4.19624 | overlap 2339897 2339896 2339893 2339932 GGCGCTGATGACCAT GGCCGCCATCGGCGCGTTGTTCATCG GCG CGGCGGAAGAGGCGGCGCTGGTGGTC TTTCTGTTCGCCCTG Pden_2344 2339369 - 2341567 + | heavy metal translocating P-type ATPase TERM 1508 2341848 - 2341861 + T 76 -9.5 -4.07568 | TCGGGGCTTGTCAAG GCCGC ATTC GCGGC TTTTCGCAAGCCCCC TERM 1509 2341906 - 2341884 - T 80 -14.1 -3.34894 | overlap 2341882 AAGCCCCCGCAAAGA CCCCCGCCC CATGC AGGCGGGGG CAGGTGCATCATTCG Pden_2346 2344743 - 2341915 - | glycine dehydrogenase TERM 1510 2344563 - 2344545 - G 75 -10.2 -4.08216 | opp_overlap 2344562 GCATGCGCTGCAAAA GCGCCGCC TCG GACAGCGC CGGCCAGTCCAGGGA TERM 1511 2344793 - 2344818 + r 75 -9.7 -4.04549 | gap 1, overlap 2344793 2344796 TTGCCTTCGGGATCG CACGGGCCGGGA ATG TCCCCGCCC-TG TCTTTTTCCGTTTTC TERM 1512 2344793 - 2344820 + r 83 -6.2 -4.87318 | gap 1, overlap 2344793 2344796 TTGCCTTCGGGATCG CAC-GGGCCGGGA ATG TCCCCGCCCTGTC TTTTTCCGTTTTCCA TERM 1513 2344796 - 2344816 + r 77 -12.5 -3.58552 | overlap 2344793 2344793 CCTTCGGGATCGCAC GGGCCGGGA ATG TCCCCGCCC TGTCTTTTTCCGTTT Pden_2347 2345259 - 2344903 - | glycine cleavage system H protein Pden_2348 2346382 - 2345270 - | glycine cleavage system T protein Pden_2349 2347441 - 2346659 - | short-chain dehydrogenase/reductase SDR TERM 1514 2346967 - 2346953 - G 70 -8.5 -3.86015 | CATGCCGGCGACAAA GCCGG TCAAC CCGGC GCGCGCGGTGTTCGA TERM 1515 2347153 - 2347175 + g 71 -11.3 -3.61715 | gap 1 ACCAGTCGGTCCAGG TGCCGGGCGG CGGG CCGC-CGGCA TTGTTGACCAGGATG Pden_2350 2347838 - 2347500 - | hypothetical protein Pden_2351 2348449 - 2347835 - | hypothetical protein TERM 1516 2348423 - 2348372 - G 76 -14.4 -3.53012 | gap 1 CCCGCGCTGGGCAAA GACCAGATCGCCCGCCTCGCCCGCC CAA AGCGGGCC-GGCCAGCAATCCGATC AGCGCAAGGCCACGC Pden_2352 2349858 - 2348533 - | histidine kinase Pden_2353 2351043 - 2349862 - | hypothetical protein Pden_2354 2351750 - 2351040 - | two component LuxR family transcriptional regulator TERM 1517 2351807 - 2351770 - H 75 -7 -4.41348 | opp_overlap 2351778, overlap 2351773 CTCCTCCCAAAGAAA CGATAGTGGGCCGG-GCG GTGG CGCACCGGCCT-CTATGG GTCCATTCTAAGACC TERM 1518 2351778 - 2351800 + H 71 -12.7 -2.92389 | gap 1, opp_overlap 2351773 2351770 AAAGAAACGATAGTG GGCCGG-GCG GTGG CGCACCGGCC TCTATGGGTCCATTC Pden_2355 2351939 - 2352928 + | putative ABC transporter periplasmic solute-binding protein Pden_2356 2352936 - 2353718 + | binding-protein-dependent transport systems inner membrane component Pden_2357 2353708 - 2354298 + | ABC transporter related Pden_2358 2355056 - 2354286 - | hypothetical protein Pden_2359 2356189 - 2355053 - | pyrroloquinoline quinone biosynthesis protein PqqE Pden_2360 2356494 - 2356186 - | coenzyme PQQ synthesis D Pden_2361 2357285 - 2356491 - | pyrroloquinoline quinone biosynthesis protein PqqC TERM 1519 2356939 - 2356911 - G 71 -11 -3.61178 | gap 2 GGCATCGACGGCAAA GCGGGTCGCGGGCA TCA CGCCCGCG-CC-GC TGGCGACGTAATCGG Pden_2362 2358172 - 2357282 - | pyrroloquinoline quinone biosynthesis protein PqqB TERM 1520 2357470 - 2357508 + g 74 -11.7 -3.79747 | gap 1, overlap 2357431 CCGGCACATGCCCCA TGCGCCGC-CCGGTCTTG GCTC CAAGGCCGGCGCGGACCA TTTCGTCATCCGTCC TERM 1521 2358227 - 2358179 - H 74 -11.6 -3.61654 | gap 2, overlap 2358180 GATACGCATGGGAAA GGCTCCGGCAGGCCCGGCCCCCGG CTG CCGGGGACCGGGCCGG--GGAATA TCGCCGGCGGGTTAG TERM 1522 2358226 - 2358180 - H 75 -15.1 -2.76671 | gap 2, overlap 2358179 ATACGCATGGGAAAG GCTCCGGCAGGCCCGGCCCCCGG CTG CCGGGGACCGGGCCGG--GGAAT ATCGCCGGCGGGTTA TERM 1523 2359004 - 2359031 + G 73 -12.7 -3.53012 | gap 1 AAGCTGGATGGCCTC GGTC-CCGCGCC AGATC GGCGCGGCGGCC TTTGCCGGCACGAGG Pden_2363 2358471 - 2359526 + | beta-lactamase domain-containing protein TERM 1524 2360210 - 2360192 - g 74 -14.6 -3.07816 | opp_overlap 2360173 2360183, overlap 2360164 CGGCGAGGCATCGAA CGCCATCG CTT CGATGGCG ATCAACGGCTATCTG TERM 1525 2362179 - 2362151 - g 75 -10.1 -4.07885 | opp_overlap 2362152 2362170 TACGGTTTCGGAAAA CGCCGAGGCGCGC TTT GCGCTCATCGCCG TCGGCCCGGACCTGA Pden_2364 2359584 - 2365085 + | alpha-2-macroglobulin domain-containing protein TERM 1526 2365120 - 2365148 + F 100 -18.9 -3.33815 | TGGCACCCGACCCCT GCACCCCGGCC CCCGAAA GGCCGGGGTGC TTCGTTGCGGGCGCT Pden_2365 2365153 - 2366238 + | Fis family transcriptional regulator TERM 1527 2366937 - 2366915 - g 76 -14.1 -3.53012 | opp_overlap 2366910 TGCGTGGTGCTGAAA CCGGCCGAG CAGAC CCCGGCCGG CATCATGGTCTGGGC Pden_2366 2366345 - 2367871 + | aldehyde dehydrogenase TERM 1528 2367907 - 2367877 - f 72 -13.3 -3.05384 | gap 1 CTTCTTCTGATGGAA TGGCCGGGCGCATG TCAT CCTGCGCCCGG-CA CGCCTCCCCCTCCCT TERM 1529 2368581 - 2368566 - g 72 -6 -4.3129 | CATCGACGACGAAAA GCTGGC ACTG GCCCGC AAGCTGGGCGCCACG Pden_2367 2367955 - 2368989 + | alcohol dehydrogenase Pden_2368 2368992 - 2369348 + | hypothetical protein TERM 1530 2369354 - 2369396 + T 88 -10.3 -4.36914 | overlap 2369356 CCGGCTCTGACCGCG GCACGGGCGCACGGCCTCC CCCAA GCCGTCCGTGCGCCCGCCC TTTTCTCAGGCGCGG Pden_2369 2369593 - 2369402 - | hypothetical protein Pden_2370 2370228 - 2369590 - | peptidase S16, lon domain-containing protein TERM 1531 2369637 - 2369695 + g 81 -9.5 -4.25104 | GCAGGGCGTATTCCA GCAGCCCCTCCAGCA-GCACGCGGCGCTT GGC AAGCGTCG-GCGCCTCCAGCAGGGCCTGC TTTTCCTCGGGGGCG Pden_2371 2371141 - 2370230 - | thioredoxin domain-containing protein Pden_2372 2372017 - 2371232 - | exodeoxyribonuclease III Xth TERM 1532 2371292 - 2371310 + g 70 -12.4 -3.29461 | CTGCCAGCCGCGCAG CGGCCGCA GGA TGCGGCTG TTGTGCCCCGCATTG TERM 1533 2372236 - 2372208 - g 100 -18.2 -4.74504 | gap 1, opp_overlap 2372205 AGGGCAAGCGAAAAA CCCGGCCGCCGGT CTGG ACCGG-GGCCGGG TCATCATGTGGCCGC Pden_2373 2372110 - 2372355 + | hypothetical protein Pden_2374 2373007 - 2372321 - | two component transcriptional regulator TERM 1534 2372962 - 2372990 + g 71 -2.3 -4.65895 | CCAGCGCCTCGCGCA GGTCGTCCTCGTC ATC GACCAGCAGGATC TTTTTCAGTCCGGCC TERM 1535 2374107 - 2374079 - g 77 -3.8 -4.70626 | overlap 2374067 2374081 CAACAACCCGAAAAA GGTCGCCATG CTGGAGGGC CATGGCATCC GCGTGGCCGAGCGCG Pden_2375 2373141 - 2374202 + | GTP cyclohydrolase II Pden_2376 2374211 - 2374735 + | hypothetical protein Pden_2377 2375489 - 2374740 - | short-chain dehydrogenase/reductase SDR Pden_2378 2376790 - 2375591 - | putative RNA methylase Pden_2379 2376954 - 2377748 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_2380 2378538 - 2377750 - | metallophosphoesterase Pden_2381 2379515 - 2378535 - | diacylglycerol kinase, catalytic region TERM 1536 2379925 - 2379914 - g 72 -3.6 -4.57569 | CGAGGCGCCGAAAAA GACG GCGT CGCC CGTGCCTGATCCGGT Pden_2382 2379864 - 2381087 + | isochorismate synthases TERM 1537 2381178 - 2381208 + G 77 -11.8 -3.87373 | overlap 2381180 CCGACCGCGACCGTC TGGCGCTGCTGGTC CAC GACATGCAGCGCTA TTTCTGCCGCGTCTA TERM 1538 2381180 - 2381206 + G 73 -12.2 -3.5241 | overlap 2381178 GACCGCGACCGTCTG GCGCTGCTGGTC CAC GACATGCAGCGC TATTTCTGCCGCGTC Pden_2383 2381087 - 2381743 + | isochorismatase Pden_2384 2381734 - 2382504 + | short-chain dehydrogenase/reductase SDR entE 2384420 - 2382798 - | enterobactin synthase subunit E TERM 1539 2383082 - 2383110 + g 71 -11.6 -3.59233 | GCAGGTTCTCGATTT CCTCGGCGGCGA TCTTT TCGCCGCCCCGG TTGATTTGGTCCTTG TERM 1540 2383765 - 2383743 - G 72 -5.5 -4.43877 | gap 1 CAAGGCGCAAAGAAA GCGG-GTGGC CGAG GTCACGCCGC AGATCTGGACGCTGG TERM 1541 2383910 - 2383863 - G 90 -16.3 -3.6968 | gap 2, overlap 2383855 CGACAACTGGAAGAA GGCGACCTCGCCGCCCGGGGTCG GCCC CGCCCCCGC-CGGC-AGGTCACC GCCATGGGTCAGCCA TERM 1542 2385869 - 2385893 + G 86 -6.9 -4.86731 | overlap 2385871 CGCCCGAGGATTTCG CCCGGCTGTCC GAC GGCCTGCCGCG TTTTCTTTCGGCGGC Pden_2387 2384608 - 2385957 + | condensation domain-containing protein Pden_2388 2386014 - 2386469 + | GCN5-related N-acetyltransferase Pden_2389 2386900 - 2386466 - | hypothetical protein Pden_2390 2387513 - 2386893 - | hypothetical protein TERM 1543 2387624 - 2387637 + H 70 -2.3 -4.66833 | overlap 2387606 2387605 CCGGCGCGAAAATTT TCCCG GCGG CGCGA TTTTTCCCCTTGCAC TERM 1544 2387700 - 2387674 - H 86 -13 -3.85698 | GCGCGCTCCCATAAA TGACGCCTCACC GAA GGCGAAGCGCCA TCGGGATGGAGTGCG TERM 1545 2387805 - 2387837 + H 81 -14.2 -3.53012 | gap 1, opp_overlap 2387814, overlap 2387814 ATCTTCCTTCGGGAT CGGCGAAAAGCGGCC TACG GGCCGC-TTTCGACG TTTCAGGCCACCCCC TERM 1546 2387829 - 2387814 - H 85 -11.8 -4.09685 | opp_overlap 2387805 2387814 CGGGATCGGCGAAAA GCGGCC TACG GGCCGC TTTCGACGTTTCAGG TERM 1547 2387814 - 2387829 + H 77 -11.8 -3.63968 | opp_overlap 2387814, overlap 2387805 CGGGATCGGCGAAAA GCGGCC TACG GGCCGC TTTCGACGTTTCAGG Pden_2392 2388052 - 2389314 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 1548 2389822 - 2389801 - g 70 -15.1 -2.79831 | opp_overlap 2389810 CCAATTTCCACGACA CCGACCGCC GCGC GGCGGCCGG CCTGCCGATGCGCTT TERM 1549 2389810 - 2389835 + G 73 -9.6 -3.87815 | opp_overlap 2389801 ACGACACCGACCGCC GCGCGGCGGC CGGCCT GCCGATGCGC TTTCTGGGCATGGGC Pden_2393 2389473 - 2390873 + | 6-phosphogluconate dehydrogenase TERM 1550 2391337 - 2391309 - f 100 -14.6 -4.82128 | gap 1 CTACGAAATAGAAAA CCCCGG-CTCGGC GGCA ACCGAGACCGGGG TTCAAGCTCATGTGA TERM 1551 2392434 - 2392444 + G 72 -4.6 -4.3898 | overlap 2392421 TTCCGGGTCAGGGAT GCTG CCG CGGC TTTTGTCGGCATGGT Pden_2394 2391447 - 2392544 + | hypothetical protein TERM 1552 2392773 - 2392755 - g 71 -3 -4.63932 | overlap 2392758 TATCGCCGAACAAAA CAAGCTGC TGC GCCGATTG CGCAAGGAGCAGCCG TERM 1553 2392783 - 2392758 - g 72 -5.4 -4.43307 | gap 1, overlap 2392755 CGCCGAACAAAACAA GCTGC-TGCGC CGATT GCGCAAGGAGC AGCCGGACCGGAAGG Pden_2395 2392537 - 2393898 + | hypothetical protein Pden_2396 2394003 - 2394248 + | CopG/Arc/MetJ family transcriptional regulator Pden_2397 2394370 - 2394717 + | hypothetical protein Pden_2398 2396110 - 2394938 - | hypothetical protein TERM 1554 2396338 - 2396378 + r 75 -12.6 -3.53224 | gap 2, opp_overlap 2396338 ACGGGCGGCCGCAAA CCGCATTCCGCCCCAGCCGC TTG GGGGC-G-GTCGGAATGCGG TTTGCGCGCAGCCTG TERM 1555 2396378 - 2396338 - R 75 -12.6 -3.53091 | gap 2, opp_overlap 2396338 ACGGGCGGCCGCAAA CCGCATTCCGCCCCAGCCGC TTG GGGGC-G-GTCGGAATGCGG TTTGCGCGCAGCCTG Pden_2399 2396644 - 2396435 - | hypothetical protein Pden_2400 2397058 - 2396780 - | hypothetical protein Pden_2401 2397564 - 2397055 - | hypothetical protein Pden_2402 2398063 - 2397740 - | hypothetical protein Pden_2403 2398139 - 2398366 + | XRE family transcriptional regulator Pden_2404 2398439 - 2399194 + | hypothetical protein TERM 1556 2399498 - 2399480 - g 74 -14.6 -3.02461 | TAATCCCGCTCAATA CGCGTCGA TCA TCGACGCG GGGCTTGCCGTGAGA Pden_2405 2399178 - 2399603 + | hypothetical protein Pden_2406 2399885 - 2400790 + | D-alanine--D-alanine ligase Pden_2407 2404012 - 2400950 - | Mur ligase middle domain-containing protein TERM 1557 2401525 - 2401546 + g 73 -13 -3.53091 | opp_overlap 2401522, overlap 2401489 TGCGGTAATCGAGCA GCCCGCCT CCGGGC AGGCGGGC TTTGACCCGCCCCGT Pden_2408 2405817 - 2404009 - | hypothetical protein TERM 1558 2405388 - 2405374 - G 72 -3.4 -4.60487 | overlap 2405376 CAGCATCGCGAAAAA CCGCAG GAA CCGCCG GTAATAGGTGCTGGC Pden_2409 2406701 - 2405814 - | hypothetical protein Pden_2410 2408428 - 2406704 - | hypothetical protein TERM 1559 2408042 - 2408026 - G 81 -3.6 -4.82901 | opp_overlap 2408029 CCTGCTCCAGAAAAA GATGGG TAAAG CCCTTC TCCAAAGCGATTCCG Pden_2411 2409807 - 2408431 - | outer membrane efflux protein TERM 1560 2408683 - 2408701 + g 84 -10.2 -4.4078 | CAGGATCTCGATCTG GCGAGCCA GCA TGGCCCGC TTTTCCTTCAGCGAC Pden_2412 2411014 - 2409815 - | HlyD family type I secretion membrane fusion protein TERM 1561 2410928 - 2410916 - G 77 -3.3 -4.67904 | overlap 2410918 CAGCAATGCGAAAAA GGCCA GCA CGACC CGTTTCGAGCGGGTG Pden_2413 2413311 - 2411014 - | ABC transporter related TERM 1562 2413054 - 2413044 - G 71 -2.4 -4.56597 | TCTCCGGCGCAAAAA GCCG AAC CCGC AACCCCAGATGGCGA TERM 1563 2413283 - 2413310 + g 86 -14 -3.9461 | opp_overlap 2413278, overlap 2413284 AATGGAAAAGCTGTG AAGGCGCGCCGG AAAA CCGGCGCGCCCA TTCTTGTTCAGGACG TERM 1564 2413284 - 2413309 + g 80 -17.5 -2.96444 | opp_overlap 2413278, overlap 2413283 ATGGAAAAGCTGTGA AGGCGCGCCGG AAAA CCGGCGCGCCC ATTCTTGTTCAGGAC TERM 1565 2420024 - 2419981 - g 70 -8.3 -3.86015 | gap 2 CATCTCTCCCACAAA TGCCCGGC--TGGATTGAGGC GGGA ACATCAATCCAAAGCCAGGCA ATCGGATTTTACTCA Pden_2414 2419791 - 2420072 + | hypothetical protein Pden_2415 2420415 - 2420089 - | XRE family transcriptional regulator TERM 1566 2420841 - 2420820 - R 70 -7.9 -4.05446 | GCTTCGAACCATAAA GCGGGCGAT CGGC ACAGCCCGC CTTCCCGTGAATCGC TERM 1567 2421128 - 2421116 - R 70 -6.2 -4.31433 | opp_overlap 2421115, overlap 2421124 CAGGCTCAGAACAAA CGCG AAAAG CGCG CTGATTGCGCCGCCG Pden_2416 2421978 - 2421784 - | hypothetical protein Pden_2417 2422346 - 2422041 - | IS66 Orf2 family protein TERM 1568 2423105 - 2423088 - g 70 -12.7 -3.34715 | overlap 2423086 GATGGTGCGGAAATA TGCCGGG GAAG CCCGGCA GATCATGCGGGCGCG Pden_2418 2422453 - 2423145 + | phage integrase family protein Pden_2419 2424307 - 2423384 - | phage integrase family protein Pden_2420 2424609 - 2424334 - | hypothetical protein Pden_2421 2424703 - 2425491 + | XRE family transcriptional regulator Pden_2423 2427872 - 2426535 - | hypothetical protein TERM 1569 2427650 - 2427675 + g 72 -5.4 -4.43307 | gap 1, overlap 2427660 CCTTCCGGTCCGGCT GCTCCTTGCGC AATCG GCGCA-GCAGC TTGTTTTGTTCGGCG TERM 1570 2427660 - 2427678 + g 71 -3 -4.63932 | overlap 2427650 CGGCTGCTCCTTGCG CAATCGGC GCA GCAGCTTG TTTTGTTCGGCGATA Pden_2424 2428012 - 2428923 + | transporter DMT superfamily protein TERM 1571 2429321 - 2429288 - g 75 -10.2 -4.07568 | gap 1, overlap 2429306 CGGCCTGCCGCAAAA GGCGGCCG-AGCGAC TCAAG GCCGCCGCGGCCGGC CTGCAAAACGATCCG Pden_2425 2428920 - 2429660 + | hypothetical protein TERM 1572 2430980 - 2431020 + G 71 -9.7 -3.68351 | gap 3, overlap 2430980 2430999 CACCGCCCAGATCCC GGG-C-GGCGCCGCGGCAGC CCCG GCCGTCGCGG-GCCAGACCC TTTACGTCGTCACCC Pden_2426 2429742 - 2431064 + | Pyrrolo-quinoline quinone TERM 1573 2431188 - 2431213 + G 75 -10.3 -3.99592 | GCGACCTGCGCGAGG GCGCGGGGCGT CTGG GCGACCTGCGC TTTATCGTCGTCGAT engA 2431061 - 2432530 + | GTP-binding protein EngA Pden_2428 2433400 - 2432540 - | hypothetical protein Pden_2429 2434749 - 2433457 - | seryl-tRNA synthetase TERM 1574 2433883 - 2433901 + g 73 -7.4 -4.12188 | CGATTCCGCATCGGT GATCGAGA CCA TCTCGACC TTTTCGAACTGGTGC Pden_2430 2435190 - 2434831 - | SoxS Pden_2431 2435333 - 2436346 + | arginine/ornithine transport system ATPase TERM 1575 2436570 - 2436540 - g 76 -13.8 -3.53012 | overlap 2436541 CGCCGCCTCGCCAAA GGCGCCGGGGGCCG CAT CGGCCCCGGCCGCA CCGCCGTCACCGACC TERM 1576 2436569 - 2436541 - g 78 -17.3 -2.71712 | overlap 2436540 GCCGCCTCGCCAAAG GCGCCGGGGGCCG CAT CGGCCCCGGCCGC ACCGCCGTCACCGAC Pden_2432 2436330 - 2436920 + | methylated-DNA--protein-cysteine methyltransferase TERM 1577 2437003 - 2437023 + F 93 -16.1 -3.92324 | CGCAAACGGATTTCC GGGCGCTGC CAC GCGGCGCCC TTTCATATTGCGGGC rpmB 2437076 - 2437351 + | 50S ribosomal protein L28 TERM 1578 2437411 - 2437434 + F 90 -11.6 -4.39166 | overlap 2437412 CGGCCACATGCGATG CGCCCTGCCG TCCG CGGCGGGGCC TTTTCATATCTGGAC TERM 1579 2437412 - 2437433 + F 83 -15.1 -3.23018 | overlap 2437411 GGCCACATGCGATGC GCCCTGCCG TCCG CGGCGGGGC CTTTTCATATCTGGA Pden_2434 2437625 - 2438041 + | hypothetical protein Pden_2435 2438041 - 2438394 + | hypothetical protein Pden_2436 2439323 - 2438382 - | hypothetical protein Pden_2437 2440302 - 2439316 - | hypothetical protein TERM 1580 2440184 - 2440201 + g 74 -14.1 -3.28924 | TAGGGCACCGGCACG CCCGGCG GGGT CGCCGGG TTCTCGGGCGGGGTG Pden_2438 2441363 - 2440299 - | 3-oxoacyl-(acyl carrier protein) synthase TERM 1581 2440785 - 2440740 - G 70 -8.9 -3.86897 | gap 1 CGCATTGCCCAGAAA GGCCGCCTCGCGCGCCAGCC CCAGCCC GGTCAGC-CGCAAGGCGCCC CCCGGCCCCAGCAGC TERM 1582 2441025 - 2440980 - G 86 -18.4 -3.15544 | gap 2, overlap 2441008 TTCCAGCCCGACGAA GCCCGAG-GGCCGGC-CATGCG CCAC CACATGCGCCCGCCGCTCGGGC AGGCCCAGGATCTGG Pden_2439 2442460 - 2441360 - | hypothetical protein Pden_2440 2445216 - 2442469 - | ATPase TERM 1583 2443045 - 2442997 - G 71 -2.4 -4.62302 | gap 2 GAAGACCTGGAAAAA GATCTCGTGCACGTCGGGATGG GCCTTTT CCACCTCGTCGAGCA-G-GATC ACCGAATAGGGCCGG TERM 1584 2444202 - 2444217 + g 71 -11.8 -3.55622 | CGGTGCGCAACTCGC CCCGCG CCAG CGCGGG TTTCAGCAGGTTCGC TERM 1585 2445285 - 2445261 - H 73 -9.9 -3.92641 | overlap 2445262 AACCGGAGCGATAAA TCGGGCTTGCC ACG GGCAAGCTCGG GGGGAAAATGACCCT TERM 1586 2445284 - 2445262 - H 71 -13.4 -2.95102 | overlap 2445261 ACCGGAGCGATAAAT CGGGCTTGCC ACG GGCAAGCTCG GGGGGAAAATGACCC Pden_2441 2445389 - 2447494 + | protein kinase Pden_2442 2447625 - 2448755 + | ImpA domain-containing protein Pden_2443 2448813 - 2449355 + | hypothetical protein Pden_2444 2449359 - 2450873 + | hypothetical protein TERM 1587 2451169 - 2451130 - g 79 -7.8 -4.4648 | gap 2, overlap 2451131 AGGCCGAGCAGAAAA GCTCGGCCGCG-AC-CGG GTCGGG CCGCGTGCGCGGGCGCGC CACCGTCAGCGACCT Pden_2445 2451018 - 2451506 + | hypothetical protein Pden_2446 2451532 - 2452278 + | hypothetical protein Pden_2447 2452278 - 2454140 + | hypothetical protein TERM 1588 2454541 - 2454578 + GF 77 -12.5 -3.56092 | CTTTGCCGAGGCCCA GCCCGCCATCGCCGCCG ATCA CGGGCGCGAGGGCAGGC TTTCGGCGATGATCG TERM 1589 2454931 - 2454964 + GF 72 -8.2 -3.96148 | gap 3 GCTGATCGAGGACGG GC-CGGCAAGGGCGGCG CTG CGCCGCC--TGCTGCGC TTTGTCATGGGCGAA Pden_2448 2454104 - 2455141 + | hypothetical protein Pden_2449 2455141 - 2456376 + | FHA domain-containing protein Pden_2450 2456373 - 2456846 + | hypothetical protein Pden_2451 2456858 - 2458192 + | hypothetical protein TERM 1590 2458668 - 2458690 + G 72 -3.3 -4.57073 | gap 1, opp_overlap 2458665 TGACGCAGATGACCG GCGAG-GTCG ATGC CGGCACCCGC TTTTTCGACCGGCTG Pden_2452 2458202 - 2459593 + | OmpA/MotB domain-containing protein TERM 1591 2459924 - 2459950 + G 78 -5.8 -4.57073 | gap 1, overlap 2459935 ATCCTGGCGACACTG GCG-CGCTCGC GCCTGG GCAAGCGGCGC TTTTTGCGCGAGATG TERM 1592 2460155 - 2460109 - g 75 -9.3 -4.18018 | GTTCTTTACCGAAAA CGCCGTGCTGGTCGACACCGC CGGCC GCTATACCGACCAGTCCAGCG AACCCGAGCGCGATG TERM 1593 2460912 - 2460958 + G 73 -7.9 -4.1891 | CATGGATCTGGCGCG GCTC-GGCCGTGGCGGCGGCGCT GCT GGTGCTGCTGGCG-GGCCTGGGC TTTCTGTTCAACACC Pden_2453 2459594 - 2463124 + | ImcF domain-containing protein Pden_2454 2463106 - 2463621 + | hypothetical protein Pden_2455 2465959 - 2463608 - | Rhs element Vgr protein Pden_2456 2468447 - 2466042 - | hypothetical protein TERM 1594 2466495 - 2466459 - G 70 -9.4 -3.85698 | overlap 2466489 CGCGCGTTGCAGAAA GGCGGCGCTGT-CGGGGC TGA GCCCGGCAAAGCGC-GCC TCGGGCTTCCAGCGC Pden_2457 2469370 - 2468423 - | hypothetical protein TERM 1595 2469036 - 2468992 - G 70 -15 -2.71712 | gap 2, overlap 2468991 GCGGGCTTTCGAAAT CCTCGCCG-CCCAGATCG-GCC GGG GGCGCGACCTGGGGCGGCGGCG CGACCGGGGCGCGGT Pden_2458 2470148 - 2469372 - | protein phosphatase 2C domain-containing protein Pden_2459 2470233 - 2470826 + | OmpA/MotB domain-containing protein Pden_2460 2470943 - 2472706 + | polypeptide-transport-associated domain-containing protein TERM 1596 2473251 - 2473231 - gf 75 -14 -3.01924 | GACGGGTCGCCAACA GCGGCACG ATCCG CGTGCCGC TGGGCACGGTGGGGC TERM 1597 2474547 - 2474579 + GF 71 -13.3 -2.94218 | GCGGGCTTCCTGCGT GCGACGGGCGGCG CCGGGAC CGCCGCCAGCCGC TATGTCATCGCCGAT TERM 1598 2475250 - 2475232 - gf 78 -13.8 -3.27475 | overlap 2475230 GGTCCGAGGACAACA GCGAGGGC TTC GCCCCCGC CTCGCGCATCGGTGG Pden_2461 2472753 - 2477666 + | filamentous haemagglutinin outer membrane protein TERM 1599 2478453 - 2478466 + GT 71 -9.5 -3.75332 | CCGCGCCGCCGACCC GGCGC TGCT GCGCC TTTACCTTCAGCGCT TERM 1600 2478899 - 2478940 + GT 72 -11.3 -3.53012 | opp_overlap 2478883 2478882 TCGCGCTGCTGGCGC GGGCCACCGCGGCGGCCGG CCTG CGGGCCGAGGCGGTCGCGC TTTACGAAAACGCGG TERM 1601 2479093 - 2479058 - gT 77 -11 -3.72576 | gap 1, opp_overlap 2479062, overlap 2479059 TGGCGCTTTACGAAA GGGCCGCCGCCGCCGGC AGC GCCGACG-CGGCGATCA ATCTGGCGGTGACGC TERM 1602 2479092 - 2479059 - gT 77 -14.5 -2.83403 | gap 1, opp_overlap 2479062, overlap 2479058 GGCGCTTTACGAAAG GGCCGCCGCCGCCGGC AGC GCCGACG-CGGCGATC AATCTGGCGGTGACG Pden_2462 2477635 - 2479584 + | peptidase C14, caspase catalytic subunit p20 TERM 1603 2479742 - 2479700 - T 95 -12.1 -4.30978 | gap 1, opp_overlap 2479700, overlap 2479701 2479702 CGGAATGCAGCAAAA CTGGCCGGATCGGCAG ATATCGGGGAGG CCGCCGATCCGGCC-G ATTCCTCCCCTCGCG TERM 1604 2479742 - 2479701 - T 71 -12.3 -3.18105 | opp_overlap 2479700, overlap 2479700 2479702 GGAATGCAGCAAAAC TGGCCGGATCGGCAG ATATCGGGGAGG CCGCCGATCCGGCCG ATTCCTCCCCTCGCG TERM 1605 2479741 - 2479702 - T 77 -15.8 -2.50381 | opp_overlap 2479700, overlap 2479700 2479701 GAATGCAGCAAAACT GGCCGGATCGGCAG ATATCGGGGAGG CCGCCGATCCGGCC GATTCCTCCCCTCGC TERM 1606 2479804 - 2479768 - T 71 -4.4 -4.48987 | gap 1, overlap 2479762 2479770 2479794 TCGCGACAACGAAAA GCCTGCGGC-CTACC GGATGAAA GACAGCGCCGCAGCC GCAACAGAAGGCGCG Pden_2463 2480135 - 2479845 - | hypothetical protein Pden_2464 2480945 - 2480226 - | hypothetical protein Pden_2465 2482648 - 2480963 - | hemolysin-type calcium-binding region Pden_2466 2483106 - 2482759 - | hypothetical protein TERM 1607 2482828 - 2482806 - G 78 -9.2 -4.2558 | CATCTGTCACGAAAA GCATTTCATG CAT CGTGAAATGC GTGGATGAGGGGGTG Pden_2467 2484091 - 2483174 - | response regulator receiver protein TERM 1608 2483679 - 2483656 - G 77 -3.2 -4.6856 | gap 1, overlap 2483659 CAAAGATTCCAAAAA CGA-CTTCC AGCCCAA GGAAGATCG CGAAATGGAAAACCC TERM 1609 2484051 - 2484072 + g 75 -5.2 -4.60041 | gap 1 GGCGTTACGGACGAG CCGTTG-CA AAACG TGACAACGG TTTTTGGGGATACCT TERM 1610 2484215 - 2484239 + H 81 -2.8 -5.0538 | gap 1 TCGCACTCAACCCTT GCGGTC-GACA GTCA TGCCGGATCGC TTTTTTCAGGTGGCG Pden_2468 2484647 - 2485534 + | cation diffusion facilitator family transporter Pden_2469 2486523 - 2485531 - | ABC transporter related Pden_2470 2487400 - 2486561 - | binding-protein-dependent transport systems inner membrane component TERM 1611 2487197 - 2487187 - G 70 -3.2 -4.41616 | AGTTCTGGAAATAAA GGAC GAA ATCC CCCTGCGCCAGCACC Pden_2471 2488327 - 2487410 - | binding-protein-dependent transport systems inner membrane component TERM 1612 2488035 - 2488013 - G 72 -6.8 -4.36914 | overlap 2487995 GGCGGTGCGATAAAA CGCCGCCCCC CGC AGCCGCGGCG AGCTCAGCAGCGCCG TERM 1613 2488389 - 2488421 + r 81 -17 -2.61548 | gap 1, opp_overlap 2488358 2488357 2488355, overlap 2488386 2488399 GGGCGGAAAGCCCCC CGCCATCGCCGGGCC GTCA GGCCCGGCCA-GGCG TCACTTCTGCTGCGG Pden_2472 2489681 - 2488422 - | extracellular solute-binding protein murQ 2490608 - 2489730 - | N-acetylmuramic acid-6-phosphate etherase TERM 1614 2490174 - 2490126 - G 71 -11.6 -3.6106 | gap 1 CGCAACATTGGCAAA GCCGGCCACGGTCAC-GCCGCGC TCCT GCGCAGCCGTGGCAATCGCCAGC GCATAGGGCGTGCGC Pden_2474 2490761 - 2491594 + | ATPase, BadF/BadG/BcrA/BcrD type Pden_2475 2491594 - 2492361 + | UbiC transcription regulator-associated domain-containing protein Pden_2476 2492361 - 2493386 + | glutamine--fructose-6-phosphate transaminase (isomerizing) TERM 1615 2493516 - 2493544 + G 86 -13.7 -3.92522 | CGGCCAAGGGGCGGC GGGCGGTGCCGGG CAT CCTGGCCCCGGCC TTTCTGGACTTGCAG Pden_2477 2493386 - 2494507 + | N-acetylglucosamine-6-phosphate deacetylase TERM 1616 2494651 - 2494632 - g 74 -12.2 -3.62046 | CGAGGCGGTGAAGAA GTCCGTTC TGCT GAACGGAC TGACCCCCGAGATGC Pden_2478 2494525 - 2495274 + | CRP/FNR family transcriptional regulator Pden_2479 2495702 - 2495469 - | hypothetical protein Pden_2480 2496242 - 2495706 - | cytochrome c oxidase, subunit III Pden_2481 2498158 - 2496242 - | von Willebrand factor, type A Pden_2482 2498982 - 2498170 - | ATPase TERM 1617 2498846 - 2498796 - G 86 -13.7 -3.89524 | opp_overlap 2498805 2498836 AGGCCACGGTATAAA GCGGCCGGCCCAGCCGCGCCGCC ATATG GGCGACGAAGCGGGTCTTGCCGC AGCCGGTCGGGCCTT Pden_2483 2500374 - 2498986 - | cytochrome c oxidase, subunit I Pden_2484 2500840 - 2500388 - | nitric-oxide reductase Pden_2485 2501829 - 2500915 - | ApbE family lipoprotein TERM 1618 2501709 - 2501683 - G 70 -9.2 -3.90744 | CGCCTCGGCAAAGAA GCCGCGCGCCTG CAC CGGGCTCGCGCC ATGCAGCCGCAACGT Pden_2486 2503871 - 2501826 - | FMN-binding domain-containing protein TERM 1619 2504620 - 2504586 - g 78 -10.6 -4.11216 | overlap 2504587 CTGGGATCTGGAAAA CCTGTTCAGCGTCACG CTG CGCGACGCCGGCCAGA TCGCGCTGATCGACG Pden_2487 2503999 - 2505789 + | hydroxylamine reductase TERM 1620 2505832 - 2505809 - f 73 -15.2 -2.52543 | opp_overlap 2505802 2505800 AGCGGTTGCAACCCA GGTGGGGGCG TTCG CGCCCCCGCC CCGGCAGTATTTCAA TERM 1621 2505923 - 2505902 - g 70 -8.6 -3.90112 | overlap 2505884 GGCCGCGCAAGGAAA GGCCGCGC GCAGCG GCGCGGAC GGTGCGGTGCGGGGC Pden_2488 2505861 - 2506724 + | uroporphyrin-III C-methyltransferase Pden_2489 2506717 - 2507028 + | cytochrome c (c55X) Pden_2490 2507025 - 2508179 + | cytochrome d1, heme region Pden_2491 2508182 - 2509153 + | AsnC family transcriptional regulator Pden_2492 2509150 - 2509623 + | AsnC family transcriptional regulator TERM 1622 2510024 - 2509997 - g 76 -7.6 -4.26076 | gap 1, opp_overlap 2510017, overlap 2509998 CGAGGTCGAGGAAAA GCGCGCGCAGGTC CGC GCCCTGCTCG-GC CCCGCCTGCCGGGCC Pden_2493 2509620 - 2510102 + | AsnC family transcriptional regulator TERM 1623 2511323 - 2511311 - gf 71 -2.6 -4.56597 | CTTTCCGGGGAAAAA GCCA TGATC CGGC CCACCGCTTTCTTTA Pden_2494 2510116 - 2511339 + | radical SAM domain-containing protein Pden_2495 2511314 - 2512768 + | cytochrome d1, heme region Pden_2496 2512725 - 2512991 + | hypothetical protein TERM 1624 2514067 - 2514022 - g 100 -18.9 -3.82031 | TGAACGATGAGGAAA CCGTGGCGCTGACCGCCGGCG GCCA CACCGTCGGCAAGTGCCACGG CAACGGCAATGTCAC Pden_2497 2513247 - 2515424 + | catalase/peroxidase HPI TERM 1625 2515488 - 2515517 + T 100 -17.9 -4.14243 | opp_overlap 2515484, overlap 2515489 TGTGGTAACGATTGC TGCCCGTGGACCG GAAA CGGTTCACGGGCG TTTTGCCGTCGGATG TERM 1626 2515489 - 2515516 + T 93 -19.2 -3.08224 | opp_overlap 2515484, overlap 2515488 GTGGTAACGATTGCT GCCCGTGGACCG GAAA CGGTTCACGGGC GTTTTGCCGTCGGAT Pden_2498 2517761 - 2515560 - | primosome assembly protein PriA TERM 1627 2517367 - 2517322 - G 82 -14.5 -3.53012 | TCGCCCGGCGCGAAA CCGGCGCCGCCGTGATCCTCG ATTA CCCGCAGCACGGCGGCGCGGG CATCGGTCATGCGCG Pden_2499 2518051 - 2518704 + | putative translaldolase Pden_2500 2518704 - 2519414 + | hypothetical protein xerC 2519411 - 2520349 + | site-specific tyrosine recombinase XerC TERM 1628 2520551 - 2520574 + G 77 -15.2 -3.18582 | overlap 2520569 CTCGTGCTGCTGCTG GCCGGCGCCG CATT CGCCGCCGGC TTCGTCGATGCCATC Pden_2502 2520515 - 2521273 + | hypothetical protein Pden_2503 2522297 - 2521311 - | L-asparaginase II TERM 1629 2522854 - 2522807 - g 78 -13.2 -3.57792 | opp_overlap 2522819 TCACCGAGGGCGAAA GCGCCTGGACCGGCTCGCCGGC CGAC GACGCCAAGCTGGTCTCGGCGC TGCGCGCGGGCTCTT Pden_2504 2522449 - 2522976 + | hypothetical protein TERM 1630 2523020 - 2523003 - f 74 -12.7 -3.29739 | opp_overlap 2523003 CGGAACCGATACGAA CAGGGGC GCGA GCCCCTG TTTTCTTTTGGGCCG TERM 1631 2523003 - 2523020 + F 100 -12.7 -5.07652 | opp_overlap 2523003 CGGAACCGATACGAA CAGGGGC GCGA GCCCCTG TTTTCTTTTGGGCCG Pden_2505 2523082 - 2524257 + | radical SAM protein Pden_2506 2524476 - 2525999 + | phosphoglyceromutase Pden_2507 2525996 - 2527231 + | peptidase M23B Pden_2508 2527228 - 2528643 + | carboxyl-terminal protease Pden_2509 2528640 - 2529131 + | NUDIX hydrolase TERM 1632 2529216 - 2529187 - T 73 -9.2 -3.92659 | gap 1, opp_overlap 2529188 2529189, overlap 2529181 2529189 TTTGGAAAACGGAAA GAGAGGCGGCGCG GCTAT CGGGCCGCCCC-C TTGTCTTAGCCGCGC TERM 1633 2529215 - 2529189 - T 78 -12.9 -3.54879 | opp_overlap 2529188 2529189, overlap 2529187 2529181 TGGAAAACGGAAAGA GAGGCGGCGCG GCTAT CGGGCCGCCCC CTTGTCTTAGCCGCG Pden_2510 2530475 - 2529222 - | lytic murein transglycosylase TERM 1634 2530495 - 2530507 + r 75 -3.3 -4.84492 | CCTGTCCGTTCCGTT GCTCG TTT TGGGC TTTTGTTCTGGTTGC Pden_2511 2530881 - 2530564 - | hypothetical protein Pden_2512 2530938 - 2531408 + | YbaK/prolyl-tRNA synthetase associated region TERM 1635 2531445 - 2531426 - T 95 -16.4 -4.07568 | opp_overlap 2531423 2531417, overlap 2531438 CGCCGGGCGGCAAAA GGGGCGGG AAAA CCCGCCCC GGCTTCGCTATCCTG Pden_2513 2531704 - 2531453 - | transglycosylase-associated protein dapD 2532633 - 2531809 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase Pden_2515 2532699 - 2533553 + | hypothetical protein Pden_2516 2534299 - 2533772 - | hypothetical protein TERM 1636 2534366 - 2534376 + r 76 -2.4 -4.87893 | overlap 2534341 2534347 GCGGATTTCACCGCT CCCG CGC CGGA TTTTTCCTTAAAATT Pden_2517 2534879 - 2534412 - | hypothetical protein Pden_2518 2535215 - 2534883 - | iojap-like protein Pden_2519 2535647 - 2535414 - | hypothetical protein TERM 1637 2536672 - 2536634 - g 74 -15.3 -3.02144 | gap 1 TGACCGTCTGCAACA TGGCGATCGAGGGCGGCG CCCG CGCCGGCCT-GATCGCCC CCGACGAAAAGACCT Pden_2520 2535943 - 2537379 + | isopropylmalate isomerase large subunit Pden_2521 2537981 - 2537397 - | hypothetical protein leuD 2538074 - 2538679 + | isopropylmalate isomerase small subunit TERM 1638 2538758 - 2538787 + G 100 -17.1 -4.63218 | GGATCGCCACCTACA GCCCCGACCTGTC GCGC GACGGGCCGGGGC TTTTGTTGCGCGACC TERM 1639 2539493 - 2539455 - g 75 -16.8 -2.89564 | GGCGCATGTCACAGA CCCCCTGCC-CCGCAGCC CCGGC GGC-GCGGCGGCAAGGGG CGGCGTCAACGACGG Pden_2523 2538670 - 2539722 + | hypothetical protein Pden_2524 2540009 - 2540185 + | hypothetical protein TERM 1640 2540226 - 2540259 + G 91 -15.3 -3.95584 | GGATTGATCGCTGGC GCTGTAACGGGGCTG ATTG CCGCCCTGTTGCAGC TTTGGTTCGTGCAGC Pden_2525 2540187 - 2540885 + | cobalt transporter, subunit CbtA TERM 1641 2540905 - 2540931 + F 93 -18.7 -3.64703 | opp_overlap 2540899, overlap 2540885 GGCCGAAACCCTTAC GGCCGGGCGTG CATTC CGCGCCCGGCC TTTCCATGAAACGGG Pden_2526 2540955 - 2541488 + | hypothetical protein Pden_2527 2541488 - 2542111 + | cob(II)yrinic acid a,c-diamide reductase Pden_2528 2542531 - 2542115 - | hypothetical protein Pden_2529 2543147 - 2542536 - | cob(I)yrinic acid a,c-diamide adenosyltransferase Pden_2530 2543463 - 2543816 + | hypothetical protein Pden_2531 2543820 - 2544854 + | cobalamin biosynthesis protein CobW TERM 1642 2547624 - 2547651 + G 78 -13.4 -3.55444 | gap 1 TTCGCCGCCGCCATG GCGCGGAT-CGGC GCA GCCGCACCCGCGC TTTACCACCTGGACG cobN 2544858 - 2548028 + | cobaltochelatase Pden_2533 2548025 - 2549188 + | precorrin-3B synthase TERM 1643 2549615 - 2549654 + G 71 -10.7 -3.62096 | gap 1 GCGCGACGATCTGAA GGGCGCCGTGGTCGCCAT CGGCA AT-GCGCCCACCGCGCTC TTTCACCTGCTGAAC cobH 2549232 - 2549861 + | precorrin-8X methylmutase Pden_2535 2549864 - 2550625 + | precorrin-2 C20-methyltransferase Pden_2536 2550622 - 2551350 + | precorrin-3B C17-methyltransferase Pden_2537 2552018 - 2551326 - | precorrin-6A reductase TERM 1644 2552949 - 2552981 + G 74 -11.3 -3.73402 | gap 1 GTTCGGGCTGGCGGA TCGGATG-CGCGCC GTCCAA GGCGCGGCACCCGA TTTCCTCCACGATCT Pden_2538 2552062 - 2553234 + | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Pden_2539 2553231 - 2553581 + | precorrin methylase Pden_2540 2553578 - 2554351 + | precorrin-4 C11-methyltransferase TERM 1645 2555074 - 2555100 + G 78 -6.4 -4.66057 | opp_overlap 2555078, overlap 2555054 CCGCCGCCGGCCGAA CGCATCGCGCTG GCG CAGGACGACGCG TTTTCCTTTGTCTAT TERM 1646 2555274 - 2555288 + G 72 -8.5 -4.07568 | overlap 2555254 GGCCGGCCGCTTCCG CGCCG GGCTG CGGCG TTTTGCCGAGACCCG Pden_2541 2554348 - 2555637 + | cobyrinic acid a,c-diamide synthase Pden_2542 2555634 - 2556383 + | precorrin 6A synthase Pden_2543 2556368 - 2556676 + | hypothetical protein TERM 1647 2556729 - 2556681 - f 100 -15.3 -4.56597 | overlap 2556682 2556723 CGGCGGCCTGAAAAA TCCGCCGTCCACGCCGCGC GGAGGGAGGAG ACGCGGCATGAACGGCGGT CACTGCCATGAAGAC TERM 1648 2556728 - 2556682 - f 93 -18.8 -3.33744 | overlap 2556681 2556723 GGCGGCCTGAAAAAT CCGCCGTCCACGCCGCGC GGAGGGAGGAG ACGCGGCATGAACGGCGG TCACTGCCATGAAGA TERM 1649 2556867 - 2556849 - f 88 -10.3 -4.44448 | overlap 2556853 ACGACCGGAAAGAAA GCGATCC TGCCC GGATCGC AGTCACGCGGGCAGG Pden_2544 2557025 - 2557504 + | cytochrome c, class II TERM 1650 2557610 - 2557660 + G 72 -5.2 -4.4261 | overlap 2557612 GCCTCGGCCAGTTCG GGCCTGCCAAGATGACGCTGCATT TCT GGTGCGGCTATGTCGTGGCGGGGC TTTTGCTGTTCCGGC Pden_2545 2557504 - 2558085 + | cytochrome B561 TERM 1651 2558370 - 2558349 - T 100 -15.1 -4.20932 | opp_overlap 2558349 AACAGCTAGCGAAAA GGGCGGGAC CCGC GCCCCGCCC TTTCTCAGTTGAACC TERM 1652 2558349 - 2558370 + T 89 -12.9 -3.97368 | opp_overlap 2558349 AACAGCTAGCGAAAA GGGCGGGAC CCGC GCCCCGCCC TTTCTCAGTTGAACC Pden_2546 2560618 - 2558375 - | DNA topoisomerase IV subunit A Pden_2547 2560721 - 2561539 + | short-chain dehydrogenase/reductase SDR Pden_2548 2561564 - 2561764 + | hypothetical protein Pden_2549 2561764 - 2562336 + | ATP--cobalamin adenosyltransferase TERM 1653 2562364 - 2562379 + F 89 -5.4 -5.13473 | gap 1, opp_overlap 2562360, overlap 2562359 GGAATGGAAATGTTA CGACGCG TTA CG-GTCG TTTTTTCCCTGTCAT Pden_2550 2562457 - 2563215 + | electron transfer flavoprotein beta-subunit Pden_2551 2563215 - 2564141 + | electron transfer flavoprotein, alpha subunit TERM 1654 2564221 - 2564165 - f 88 -15.6 -3.34398 | overlap 2564163 TCCGTTTTCCAAATA CTCCGGGGGAGCGCCCCTGAGGCCCC ATCAA GGGGCCGCAGGGGCGCGGGGGCAGAG CCCCCATCCCTGCGA TERM 1655 2564273 - 2564251 - f 95 -14.9 -4.10855 | opp_overlap 2564251, overlap 2564240 AAAACCGTTTGAAAA CCGCCCGTT TCCAT AACGGGCGG TTTTTGCATTGAACG TERM 1656 2564251 - 2564273 + F 100 -14.9 -4.74103 | opp_overlap 2564240 2564251 AAAACCGTTTGAAAA CCGCCCGTT TCCAT AACGGGCGG TTTTTGCATTGAACG TERM 1657 2564897 - 2564858 - g 72 -8.4 -4.09739 | opp_overlap 2564858 2564868 2564869, overlap 2564869 CGAAGTGGTCGAAAA GATCGGCAAGACCTCGGC CAGC GCCGAGGATTTCCCGGCC TTCATCGTCAACCGC Pden_2552 2564340 - 2565215 + | 3-hydroxybutyryl-CoA dehydrogenase TERM 1658 2565217 - 2565273 + T 100 -20 -4.07568 | overlap 2565219 TGCCGACGCGATAGG GGCTCCGCCGCCGCCCTGAACGCCCC TCGAC GGGGCGCTCAGGGCGTCCCCGGAGTA TTTTCAGAACAGAGA TERM 1659 2565219 - 2565271 + T 100 -24.8 -3.63744 | overlap 2565217 CCGACGCGATAGGGG CTCCGCCGCCGCCCTGAACGCCCC TCGAC GGGGCGCTCAGGGCGTCCCCGGAG TATTTTCAGAACAGA Pden_2553 2565875 - 2565291 - | hypothetical protein Pden_2554 2567143 - 2565872 - | dihydroorotase, multifunctional complex type pyrB 2568099 - 2567140 - | aspartate carbamoyltransferase catalytic subunit TERM 1660 2568578 - 2568633 + G 77 -15.2 -3.14132 | gap 1 CCTCGGCCATGGCCG CCGCCGCCGTCGC-CGGCCTGCCGCTG ACC CGGCGCCAGACCGCGCGGCGGCTGCAA TTCGTCACCGGCGCC Pden_2556 2568202 - 2568936 + | uroporphyrin-III C-methyltransferase Pden_2557 2569020 - 2569535 + | hypothetical protein Pden_2558 2569538 - 2569780 + | SirA family protein Pden_2559 2569780 - 2570709 + | auxin efflux carrier Pden_2560 2570713 - 2571519 + | enoyl-CoA hydratase Pden_2561 2571625 - 2572569 + | hypothetical protein Pden_2562 2572944 - 2572609 - | hypothetical protein TERM 1661 2572997 - 2572987 - R 76 -2.4 -4.93547 | opp_overlap 2572992 GCAATCAACGAAAAA GGGG CGG CCTC GGGCCTTACCTTGCC Pden_2563 2573602 - 2573003 - | cytochrome B561 TERM 1662 2573469 - 2573453 - G 77 -4.3 -4.7373 | overlap 2573419 2573456 2573461 CCAGCCGACGAAAAA GGACACC AGC GGCGTGC GGCCCAGAAGCAGCC TERM 1663 2575423 - 2575465 + G 70 -12.7 -3.34398 | gap 2, overlap 2575420 CGCATCCTGGCGCAG GCCCAGCC-GGTC-GCGGTGC TGA GCACGGCCGATCTGGCGGGGC TGTTTCCCGCCGGCA TERM 1664 2575860 - 2575900 + G 74 -14 -3.27475 | gap 2, overlap 2575857 GATGCTCTCGGCCTT CCTGGC-C-TCGCCCGCCTC GCA GGGGCTGGCGATGCGCCGGG TGTTCTGCTCGGGCG TERM 1665 2576661 - 2576690 + G 70 -4.2 -4.46233 | opp_overlap 2576654, overlap 2576662 TGCCGAAATCCTGCA CCTGCC-CGAGCCG GCCC CGGC-CGAGGCGGA TTTCTTTGCCCTTGG entF 2573716 - 2577630 + | enterobactin synthase subunit F Pden_2565 2578683 - 2577850 - | putative esterase TERM 1666 2577981 - 2578029 + g 70 -9.4 -3.87815 | gap 1, overlap 2577982 CCGCGACGAACTGCA TGGT-GGCCGGTGCCGGCCCGTC GGGG GGCGGGCCGTCGCTGCCCGAGCG TTTCTCGCGATCCCC TERM 1667 2579264 - 2579288 + G 70 -9.1 -3.89524 | opp_overlap 2579256 GATAAATTCGCCATC GCCAGCGAGCC GGT GGTGCGCGGGC TTTATCAGGTGAAGT Pden_2566 2578835 - 2580241 + | hypothetical protein TERM 1668 2580705 - 2580726 + G 74 -15.1 -3.00617 | opp_overlap 2580701, overlap 2580698 2580697 CCGCCAGCAGATCGA GGCGGCCGG CATC CCGGTCGCC TATGTCGATTTCTTC Pden_2567 2580301 - 2581398 + | periplasmic binding protein TERM 1669 2582035 - 2582051 + G 71 -2.2 -4.54727 | gap 1, overlap 2582036 TGATCGGCGTGGTGC TGGC-CC TTGC GGTGCCG TTTTCCTTTCGCGCG Pden_2568 2581395 - 2582429 + | transport system permease protein Pden_2569 2582429 - 2583205 + | ABC transporter related Pden_2570 2583655 - 2583236 - | hypothetical protein Pden_2571 2584895 - 2583696 - | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein TERM 1670 2583809 - 2583770 - G 90 -13.5 -4.07885 | gap 1 CAGCCCGCGCCAAAA GCAGCGCCCGCGCCGCCT CGCCC ATGCGGCGCTGGC-CCGC CGCATCCTGCGCCAA Pden_2572 2585626 - 2584892 - | ribulose-phosphate 3-epimerase TERM 1671 2586765 - 2586750 - g 78 -10.4 -4.14511 | overlap 2586751 AATTCGACCCGAAAA GCCTCG GCTT CGAGGC GGAGATCGACGCCGA TERM 1672 2586801 - 2586827 + G 71 -10.7 -3.57263 | ACCCGCTGCCCAAGG GCGAGGCCGGG GAAAA CCGGGCCGCGC TTTGACGATGGCGAT Pden_2573 2585807 - 2586832 + | Hsp33 protein TERM 1673 2586861 - 2586884 + G 80 -16 -3.2048 | opp_overlap 2586878, overlap 2586853 CGAGACATTGATGCG GGCCCTGTCG GGAA CGACGGGGCC TTCGTCCGATTTCGA TERM 1674 2586911 - 2586946 + G 78 -13.3 -3.63569 | gap 2, opp_overlap 2586878 TCGACTTCGGAGGCA CGCC-GCCGGGCG-AGG CGGT CCTGCGCCCTGCCGGCG TTCTTGCCGCCTTCG Pden_2574 2586829 - 2587416 + | NUDIX hydrolase Pden_2575 2587413 - 2588579 + | polynucleotide adenylyltransferase region TERM 1675 2588627 - 2588653 + G 83 -9.2 -4.63527 | TTCCGCCCGGCCGAG GGCCCACCGCCG CGC CGGCTGCTGGCC TTTTTCCGCTGGTGC Pden_2576 2588579 - 2590441 + | ABC transporter related Pden_2577 2590438 - 2591658 + | (Uracil-5)-methyltransferase Pden_2578 2591724 - 2592239 + | hypothetical protein TERM 1676 2592282 - 2592243 - T 100 -15.1 -4.60041 | gap 2, overlap 2592244 ATCTACCCCTAAAAA GCGACGAAGGCCCCGCG CCTGTGCT CGCGGGGCCT-CG-CGC CGGATGGGGCCCAGT TERM 1677 2592284 - 2592244 - T 88 -16.2 -3.35542 | gap 1, overlap 2592243 TCTACCCCTAAAAAG CGACG-AAGGCCCCGCG CCTGTGCT CGCGGGGCCTCGCGCCG GATGGGGCCCAGTCG Pden_2579 2592993 - 2592340 - | glutathione S-transferase domain-containing protein TERM 1678 2592724 - 2592743 + g 71 -10.7 -3.63922 | overlap 2592722 TTTTTCCTGGGGTTC GCGAGGC ATCAGC GCCTCGC TCTTTTCCGCCAGAT TERM 1679 2593089 - 2593067 - R 77 -16.2 -2.56715 | overlap 2593063 ACCGCGAGGAATGGA GCCGGGCCGC CCG GCGGACCGGC GCGCAACTCGGGCGA TERM 1680 2593130 - 2593107 - R 93 -17.4 -3.54459 | GCAACTCGGGCGAAA GGCGCGGCCC GGAC GGACCGCGCC GCCGGATCAGATGCC Pden_2580 2593736 - 2593137 - | Allergen V5/Tpx-1 family protein TERM 1681 2593965 - 2593949 - g 75 -5.1 -4.60487 | opp_overlap 2593941 2593954 GATCACGCCGAAAAA TCCGG TTTCGCG CCGGA AATTTCTGACCGCCT Pden_2581 2593932 - 2594585 + | ErfK/YbiS/YcfS/YnhG family protein TERM 1682 2594608 - 2594631 + F 84 -12.4 -4.06419 | opp_overlap 2594612, overlap 2594612 GGGACAGGAGCGACA GCAAGGGGCC ACGA GGCCCCTTTC TTGTTTGTCGCACGG TERM 1683 2594612 - 2594627 + F 100 -11.8 -4.63048 | opp_overlap 2594612, overlap 2594608 CAGGAGCGACAGCAA GGGGCC ACGA GGCCCC TTTCTTGTTTGTCGC TERM 1684 2594627 - 2594612 - f 71 -11.8 -3.28416 | opp_overlap 2594612 2594608 CAGGAGCGACAGCAA GGGGCC ACGA GGCCCC TTTCTTGTTTGTCGC Pden_2582 2594774 - 2595289 + | hypothetical protein hemH 2596348 - 2595317 - | ferrochelatase Pden_2584 2597184 - 2596345 - | SAM-dependent methyltransferase TERM 1685 2596567 - 2596518 - G 70 -9.1 -3.85698 | gap 1 GGTTTTCGGCATAAA GC-GCAGCGGCGCGCAACAGGACA TCT CGTCGCGTCGGGTGCCGCAGCCGC TGGGCCAGCGCATTA Pden_2585 2597216 - 2597953 + | competence protein F Pden_2586 2597986 - 2598252 + | glutaredoxin 3 Pden_2587 2598249 - 2599100 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 1686 2599437 - 2599468 + G 80 -15.8 -3.14344 | gap 1 CCATCAGCCCGGCCG GGCGGGCGGCG-CGC GAC GCGGCGCTGGCCGCC TTCATGCCGCGAATC TERM 1687 2599513 - 2599535 + G 78 -10.4 -4.12188 | overlap 2599524 GGATGTCGGCGCCGA CCGGGTGCGC GCG GCGCTGCCGG TTTTGCGCATGCTGC Pden_2588 2599097 - 2599606 + | MarR family transcriptional regulator TERM 1688 2599626 - 2599585 - T 86 -10.8 -4.25104 | gap 3, opp_overlap 2599591 GTTGCGTCACGAAAA CCGCGGCTCGGGCGGGCGCTG AAC CGGCGCC-GCCCC-GCC-CGG CAGCAACGCCTGCAT Pden_2589 2600479 - 2599691 - | 3-demethylubiquinone-9 3-methyltransferase Pden_2590 2600516 - 2601502 + | proline iminopeptidase TERM 1689 2601514 - 2601532 + F 72 -11.6 -3.53012 | overlap 2601515 CTGATCCATCCGCGC CCGGGCGC GCA GCGGCCGG TTTGCGGCCCCGGCA TERM 1690 2601515 - 2601553 + F 78 -12.9 -3.53811 | overlap 2601514 2601540 TGATCCATCCGCGCC CGGGCGCGCAGCGGCCG GTTTG CGGCCCCGGCACGGCCG TTTGCGGGCGGTGCG TERM 1691 2601540 - 2601572 + F 73 -6.1 -4.42238 | overlap 2601515 GCGGCCGGTTTGCGG CCCCGGCACGGCC GTTTGCG GGCGGTGCGGCGG TTTTCCTTGCAATCC TERM 1692 2601658 - 2601674 + F 100 -10.8 -4.93696 | CACCGGTAAGACGCA CGGGCC GCCTA GGCCCG TTTTTCGTATTTGGG TERM 1693 2602238 - 2602225 - g 81 -2.3 -4.96848 | GCTGCGACAGAAAAA GGACG CGGG CGTGC AGATCGAGAATCTGG Pden_2591 2601698 - 2602318 + | hypothetical protein nusA 2602322 - 2604001 + | transcription elongation factor NusA Pden_2593 2604017 - 2604637 + | hypothetical protein TERM 1694 2605255 - 2605222 - g 74 -14.5 -3.01712 | gap 1, overlap 2605193 CCGGCCCGCGCAAGA CCGACCGCGACCGCGA CAC CCGCGGCGGCGG-CGG CGACGACCGCGACAG infB 2604645 - 2607191 + | translation initiation factor IF-2 TERM 1695 2607218 - 2607239 + T 100 -15.1 -4.34402 | AACGGCATGGATTGG GGGCGGGCC TGCG GGTCCGCCC TTTTCATGTCGAAGC TERM 1696 2607302 - 2607276 - T 100 -19.5 -5.03314 | opp_overlap 2607273 CCGAGCCGTAAAAAA GAACGGGGCCC GCCAT GGGCCCCGTTC CGCTATCATGTGGGC Pden_2595 2607460 - 2607332 - | hypothetical protein Pden_2596 2607977 - 2607579 - | mutator MutT protein TERM 1697 2607960 - 2607926 - G 75 -16.5 -2.82623 | gap 1, overlap 2607923 GCTGCGCCAGAAGCA CGCGGCCGTC-CGC ATCGATCA GCGCGACGGCCGCG ACAAGCACCATCTTC argJ 2609371 - 2607974 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 1698 2609241 - 2609183 - G 78 -13.7 -3.54424 | opp_overlap 2609240, overlap 2609184 2609207 CGGCAGGTCGGGAAA GCGCGCGGGCGCCAGCGGTGAAACC GGGCTCTTG GGCTTCACCGCAGCCGCCACCGCGG CCTCGGCCCGGGCCT TERM 1699 2609240 - 2609184 - G 78 -17.2 -2.72511 | overlap 2609183 2609207 GGCAGGTCGGGAAAG CGCGCGGGCGCCAGCGGTGAAACC GGGCTCTTG GGCTTCACCGCAGCCGCCACCGCG GCCTCGGCCCGGGCC TERM 1700 2609318 - 2609347 + g 72 -5.7 -4.35885 | overlap 2609320 2609337 CTTCTTCTTCAGCAC TTTCAGCTTTTCG GCAT CGGAAAGCCGGGA TTTCTTGTCATCCGT Pden_2598 2610214 - 2609375 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1701 2611301 - 2611245 - g 71 -2.8 -4.57073 | GAGTTCCTGGAAAAA CGGCTTCAGG-CGGCGGGCATCCTGCCC GAG GGGCAG-ACGCTCTACGACCCGGAATCG ACCACCATCGTCCAT TERM 1702 2611729 - 2611695 - g 83 -9.2 -4.66163 | overlap 2611697 2611698 2611721 2611724 ACCGCCACGGAAAAA TACGCCGCCGTGATCG AGG CGATCAAGGAGGCCCA TGCCAAGGGCCAGCC TERM 1703 2611727 - 2611697 - g 73 -9.6 -3.94812 | overlap 2611695 2611698 2611721 2611724 CGCCACGGAAAAATA CGCCGCCGTGATCG AGG CGATCAAGGAGGCC CATGCCAAGGGCCAG TERM 1704 2611839 - 2611805 - g 86 -18.6 -3.16191 | overlap 2611823 GCAGATGCTGACCAA GGAGGGCATCCAGCAC AAC GTGCTGAACGCCCGCC AGCACGAGCAAGAGG TERM 1705 2612670 - 2612654 - g 86 -12.3 -4.10657 | CTATATGGCGCAAAA GGCCGAA CAG TTCGGCC CCGAGAACATGCGCC Pden_2599 2610423 - 2613128 + | preprotein translocase subunit SecA TERM 1706 2613133 - 2613148 + T 84 -11.8 -3.96148 | TGCTGGCGTGAATTG GGGGCC TTCG GGCCCC TTTCTCATGCGCCCC Pden_2600 2613993 - 2613274 - | two component transcriptional regulator Pden_2601 2614508 - 2613990 - | MarR family transcriptional regulator Pden_2602 2614661 - 2615530 + | branched-chain amino acid aminotransferase TERM 1707 2615545 - 2615583 + T 88 -13.9 -3.85698 | gap 1, opp_overlap 2615551, overlap 2615551 ATCACGGCGCTGAAA TG-AAAACCGGCCGGGCG GCAG CACCCGGCCGGTTTCGCA TTTCTGGGCCAGAGA TERM 1708 2615551 - 2615576 + T 93 -17.5 -3.74347 | opp_overlap 2615551, overlap 2615545 GCGCTGAAATGAAAA CCGGCCGGGCG GCAG CACCCGGCCGG TTTCGCATTTCTGGG TERM 1709 2615576 - 2615551 - T 100 -19.7 -4.54727 | opp_overlap 2615551 2615545 GCGCTGAAATGAAAA CCGGCCGGGCG GCAG CACCCGGCCGG TTTCGCATTTCTGGG Pden_2603 2616346 - 2615882 - | putative PTS IIA-like nitrogen-regulatory protein PtsN TERM 1710 2616111 - 2616087 - G 71 -11.4 -3.53811 | TCCACCGCGTCGAAA TCCAGCGGCT TCTCC AGCCGCAGGA ACAGGCCGACCACAT TERM 1711 2616365 - 2616395 + r 95 -18.3 -3.90112 | opp_overlap 2616360, overlap 2616366 GCCCGAAAATTGTCA GGTCCCGGCTGCG GGCCG CGCAGCCGGGACG TTTGGTTCAACAAGA TERM 1712 2616366 - 2616394 + r 100 -21.8 -2.93853 | opp_overlap 2616360, overlap 2616365 CCCGAAAATTGTCAG GTCCCGGCTGCG GGCCG CGCAGCCGGGAC GTTTGGTTCAACAAG Pden_2604 2617007 - 2616429 - | sigma 54 modulation protein/ribosomal protein S30EA TERM 1713 2616470 - 2616503 + g 72 -8.9 -4.05446 | gap 1 AGCCCACGTTGCCGT CATCGCGGCGGTGAAC CAC GTTCAC-GCCCCCATG TTTCTCGTTGCGGAA Pden_2605 2617906 - 2617172 - | ABC transporter related Pden_2606 2618396 - 2617911 - | OstA family protein Pden_2607 2619030 - 2618449 - | hypothetical protein Pden_2608 2619980 - 2619033 - | KpsF/GutQ family protein Pden_2609 2620605 - 2619991 - | 3'-5' exonuclease TERM 1714 2620771 - 2620741 - H 74 -10.5 -3.6968 | gap 1 GCAGAAGCGCAACAA TCCCGACCG-TTTC ACTC GAAATCGGGCGGGA TATCCGAGTAAAATA Pden_2610 2620850 - 2622847 + | TonB-dependent receptor TERM 1715 2622880 - 2622898 + F 88 -9.5 -4.67353 | opp_overlap 2622875 2622873 2622880 CATACGAACAGCAAA GGCCCCC TTCGC GGGGGTC TTTTTGCATCCATGC TERM 1716 2622898 - 2622880 - f 70 -7.3 -3.96093 | opp_overlap 2622880, overlap 2622875 2622873 CATACGAACAGCAAA GGCCCCC TTCGC GGGGGTC TTTTTGCATCCATGC Pden_2611 2622995 - 2623249 + | XRE family transcriptional regulator Pden_2612 2623316 - 2624983 + | sulphate transporter TERM 1717 2625000 - 2625017 + T 76 -14.1 -3.05384 | overlap 2624989 CGGTTCTTCCCGCCC GGCGCCG GCTT CGGCGCC TTGCCTCCGGCGGGA TERM 1718 2625087 - 2625068 - T 79 -10.6 -4.07568 | CGGCGGGCGCGAAAA GGGCGGCC CGAT GGCTGCCC CGTGCCGCTCTCAGC purU 2625982 - 2625098 - | formyltetrahydrofolate deformylase Pden_2614 2626950 - 2626054 - | methenyltetrahydrofolate cyclohydrolase Pden_2615 2629964 - 2627184 - | patatin TERM 1719 2627986 - 2627968 - G 72 -5.9 -4.36914 | opp_overlap 2627984, overlap 2627969 2627970 2627980 TCGCGGTTCAGAAAA CCGCCGA AGGCA CCGACGG CGATGCCCGCCAGCT TERM 1720 2629622 - 2629635 + g 78 -9.5 -4.19817 | opp_overlap 2629620 GGTCGTTGAGCAACT GGCCG ATAT CGGCC TTTTCCGTCCATGCC Pden_2616 2631792 - 2630065 - | hypothetical protein TERM 1721 2630304 - 2630248 - G 81 -12.9 -3.88559 | gap 3 AATGATGCGGACAAA GCCGCCCGGC-GCCTGC-GGCACGACGC CATG GCGCCGCGCCAGC-GCCAGCTGCGCGGC GTTGAAGGCGACCAG Pden_2617 2632925 - 2631792 - | iron-containing alcohol dehydrogenase Pden_2618 2634409 - 2632922 - | glycerol kinase Pden_2619 2634599 - 2635369 + | DeoR family transcriptional regulator Pden_2620 2636623 - 2635379 - | kynureninase Pden_2621 2637669 - 2636641 - | periplasmic binding protein/LacI transcriptional regulator TERM 1722 2637977 - 2637951 - R 100 -13.7 -4.57341 | opp_overlap 2637951 AAGCCCGTCGAAAAA GGGCGCGACGA TCCCG TCCTCGCGCCC TTTTGTCTCAATAAC TERM 1723 2637951 - 2637977 + r 100 -14.4 -4.55287 | opp_overlap 2637951 AAGCCCGTCGAAAAA GGGCGCGACGAT CCC GTCCTCGCGCCC TTTTGTCTCAATAAC Pden_2622 2638272 - 2637985 - | hypothetical protein Pden_2623 2638668 - 2638276 - | hypothetical protein Pden_2624 2639379 - 2638735 - | TetR family transcriptional regulator TERM 1724 2639127 - 2639113 - G 79 -11.4 -4.00038 | GATCAGGACGATAAA GGGCAG AAC CTGCCC GACCGGAAGCTCGAC Pden_2625 2639751 - 2639404 - | hypothetical protein TERM 1725 2639702 - 2639737 + g 100 -16.2 -4.14392 | opp_overlap 2639699 2639700 2639697 CGATGGAAAATACGC CGGCCCTTGCCGTG AAACCCGG CAAGGCAAGGGCCG TTTTCACGATTCACG flhB 2641386 - 2640280 - | flagellar biosynthesis protein FlhB TERM 1726 2640667 - 2640685 + g 71 -2.2 -4.56314 | overlap 2640669 2640670 CCGCCGCGCGGCCTT CAGGTGCG GAT CGCCCTCG TTTTCCTTGTGTTCG Pden_2627 2642141 - 2641383 - | flagellar biosynthetic protein FliR flhA 2644222 - 2642138 - | flagellar biosynthesis protein FlhA Pden_2629 2644488 - 2644219 - | hypothetical protein Pden_2630 2644985 - 2644485 - | flagellar motor protein TERM 1727 2644854 - 2644876 + g 78 -8.4 -4.34737 | overlap 2644857 ATCGGCCATGTTCTG CAATGCATGC GGG GCGTGCATGG TTTCTTCGTTCATCA Pden_2631 2645365 - 2645898 + | hypothetical protein Pden_2632 2645895 - 2646161 + | hypothetical protein TERM 1728 2646404 - 2646454 + F 82 -15.6 -3.05596 | gap 2 CAGCAAGATCGCCCA GGGCATAGG--GACTAGCTCGGGC CATGT GCCGGGGCTGGTCGTCCTATGCCC TTAGCTCAAGCCCTC Pden_2633 2646726 - 2648360 + | phage terminase TERM 1729 2648621 - 2648586 - g 85 -11.9 -4.33274 | gap 1, overlap 2648587 GCCACACCAGGAAAA CCCGGATCGAATGCGG CCACC CCGCA-CCGATCCGGT CGCCCGAGCGCGATG TERM 1730 2648620 - 2648587 - g 77 -15.4 -3.19482 | gap 1, overlap 2648586 CCACACCAGGAAAAC CCGGATCGAATGCGG CCACC CCGCA-CCGATCCGG TCGCCCGAGCGCGAT Pden_2634 2648357 - 2648689 + | HNH endonuclease TERM 1731 2648819 - 2648792 - g 78 -12.8 -3.79747 | gap 1, overlap 2648793 2648810 CGACCGAGGACGAAA CCCGC-TCCATGG AGA CCATGGACGCGGA ATATCGCGCCAACGA Pden_2635 2648698 - 2649933 + | hypothetical protein Pden_2636 2649933 - 2650484 + | HK97 family phage prohead protease Pden_2637 2650486 - 2651547 + | hypothetical protein TERM 1732 2651586 - 2651575 - g 76 -7.2 -4.34402 | overlap 2651577 CCCCCGAGATGAAAA GGCG GCTG CGCC GGGAAAGGAACCGCG Pden_2638 2651547 - 2652053 + | hypothetical protein Pden_2639 2652029 - 2652595 + | hypothetical protein Pden_2640 2652588 - 2652845 + | hypothetical protein Pden_2641 2652854 - 2653138 + | hypothetical protein Pden_2642 2653148 - 2653450 + | hypothetical protein TERM 1733 2653508 - 2653471 - f 84 -17.2 -2.75064 | opp_overlap 2653468, overlap 2653468 GTGTTGACGCAACTA CTGCCCTTAGGGCATA GTCATT TATGTCCTAAGGGCAG CGTGTGAGGGTGTAA TERM 1734 2653710 - 2653669 - f 85 -12.3 -4.09685 | opp_overlap 2653678, overlap 2653676 GGCCATCGCCGAAAA CGAACAAGACCGCCAGGGC GGCC ACCCTGACGGTCTCATACA ATCCTAATCGGTGAA TERM 1735 2653703 - 2653676 - f 95 -15.6 -3.965 | opp_overlap 2653678, overlap 2653669 GCCGAAAACGAACAA GACCGCCAGGGC GGCC ACCCTGACGGTC TCATACAATCCTAAT Pden_2643 2653740 - 2653967 + | hypothetical protein TERM 1736 2655093 - 2655061 - g 72 -9 -4.09739 | TCAACCGGGTGAAAA CCGGCGTGCCCAGC TATGT GCCGATCACCCCGG AACTGCGGGCCGTCA Pden_2644 2654388 - 2655395 + | phage integrase family protein Pden_2645 2655906 - 2655460 - | chemotaxis protein MotA Pden_2646 2656457 - 2655915 - | hypothetical protein Pden_2647 2656797 - 2656450 - | hypothetical protein Pden_2648 2657276 - 2656794 - | flagellar basal body-associated protein FliL TERM 1737 2657626 - 2657580 - g 71 -2.9 -4.56597 | gap 2 GCCGCGGTCGAAAAA TCCGGCGTCCCCTATGAGATCCG GGG CGATTC-CATCTGGGTCGC-GGA AAGCCGCCGGGACGA TERM 1738 2658626 - 2658659 + G 78 -5.9 -4.59773 | CCTGTCGAGGCTGGA CCTGAACGGGCTGAT CCGC ATCGCCCTGGTCGGG TTTTTCGCACTGGCA TERM 1739 2658765 - 2658714 - g 71 -11.4 -3.57144 | gap 1, opp_overlap 2658713 CTGTTGAGGTCGAAA CCTGCGGGCAGTCCGGGCCAGGCCA TGC TGGA-TCGCCCGGAACGGCCGCCGG CTCTTGCGGGTGCCA fliF 2657379 - 2658959 + | flagellar MS-ring protein TERM 1740 2658969 - 2658985 + G 71 -2.1 -4.54727 | overlap 2658964 GTATGAGACCCGCCG CGCTTCG CCT CGATTCG TTTTCCTTTGGCGCC Pden_2650 2658956 - 2659516 + | hypothetical protein Pden_2651 2659519 - 2659776 + | surface presentation of antigens (SPOA) protein fliP 2659773 - 2660498 + | flagellar biosynthesis protein FliP TERM 1741 2660568 - 2660581 + F 87 -8.1 -4.77775 | overlap 2660563 GCGGGTCGGACGGCT TGCGG GATG CCGCA TTTGTTTTGTCGCGT Pden_2653 2660610 - 2661785 + | RND family efflux transporter MFP subunit Pden_2654 2661782 - 2662882 + | RND family efflux transporter MFP subunit Pden_2655 2662879 - 2665974 + | acriflavin resistance protein TERM 1742 2666028 - 2666004 - T 83 -9.9 -4.3739 | opp_overlap 2665992 TATCCGCCGACAAAA GCGGGGCGG TCGATTG CCGCGCCGC TTGGGAGGCGCACCT Pden_2656 2668454 - 2666082 - | ATP-dependent DNA helicase RecQ TERM 1743 2667142 - 2667175 + g 77 -14.5 -3.14693 | gap 1, opp_overlap 2667131, overlap 2667140 2667149 2667163 TAAAGCGTCAGCGTC TCGGCCGGGGC-ACCG TCG CGGCCGCCGCGGCCGA TCTCTTGGTAATAGG Pden_2657 2668554 - 2669126 + | hypothetical protein Pden_2658 2669142 - 2670551 + | major facilitator transporter TERM 1744 2670653 - 2670688 + GF 81 -13.2 -3.65812 | gap 1 GTCTTCGGCGCCGTT CCCGG-CCCGACGGGGG GCG CCCCCGTCTCGATCGGG TTCTATTCCAAGGGC mepA 2670548 - 2671420 + | penicillin-insensitive murein endopeptidase TERM 1745 2671428 - 2671485 + GF 77 -15.6 -2.59133 | gap 3, overlap 2671428 2671431 2671437 2671439 CCCGCTAAGGCGCGG CGGCAGGGCCGGCGGCGCGGCAGGACGGC CCC GCCG-CCTGCCGGGCC-TTG-CGCTGTCG CTGTTGCTTCTCTCT Pden_2660 2671393 - 2672361 + | hypothetical protein Pden_2661 2672358 - 2673491 + | beta-lactamase TERM 1746 2673949 - 2673974 + G 71 -2.5 -4.64676 | gap 1, overlap 2673935 CCTGGCGGCAAGCGT CGCCGGT-TCGA TCC TCGACACCACCG TTTTCTTCACCATCG Pden_2662 2673590 - 2674204 + | hypothetical protein TERM 1747 2674399 - 2674425 + T 86 -15.9 -3.27525 | overlap 2674394 TCTCCGTGGATCTCG CGGGCCGTTCT CCAGC AGAGCGGCCCG TTCCATTTCAGCCGC TERM 1748 2674597 - 2674575 - T 88 -10.5 -4.42653 | ATGGCAGGCAGAAAA CCCGGCCCC GATAA GAAGCCGGG TCGAAGCGGGATCAG Pden_2663 2675790 - 2674609 - | beta-ketothiolase Pden_2664 2675895 - 2676251 + | ModE family transcriptional regulator Pden_2665 2676318 - 2677058 + | molybdenum ABC transporter, periplasmic molybdate-binding protein TERM 1749 2677150 - 2677186 + G 71 -10.8 -3.53811 | gap 1, overlap 2677150 GGCCAGCCTGCCGCT G-GCCGTCGCGGTGGCA TGGC TGCTGGCGCGGCGGCGC TTTCCGGGGCATGGG Pden_2666 2677055 - 2677759 + | molybdate ABC transporter, inner membrane subunit Pden_2667 2677759 - 2678814 + | molybdate ABC transporter, ATPase subunit Pden_2668 2678889 - 2679467 + | hypothetical protein TERM 1750 2679469 - 2679503 + T 80 -14.2 -3.35679 | overlap 2679474 CCTCCTGCCGCTGAT CGCGCTCGCCCGCC TATTTCC GGCGGGCGATCTCG TTCTGGATGGCGAAG TERM 1751 2679474 - 2679498 + T 75 -14.3 -2.97245 | overlap 2679469 TGCCGCTGATCGCGC TCGCCCGCC TATTTCC GGCGGGCGA TCTCGTTCTGGATGG Pden_2669 2680078 - 2679482 - | outer membrane lipoprotein carrier protein LolA TERM 1752 2679989 - 2680007 + g 75 -9.6 -4.07568 | GTTGAGATAGCGCGA GATCTCGT TCA GCGAGATC TTTTCGGCCAGGGCG Pden_2670 2681427 - 2680168 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase Pden_2671 2681521 - 2682846 + | amidase TERM 1753 2682960 - 2682943 - f 76 -9.1 -4.08064 | gap 1 AATCTTGCCGCAAAA CGGGG-CG CGA CGACCCCG ACTGAGAGGCAGCCA TERM 1754 2683925 - 2683940 + G 81 -3.2 -4.81551 | overlap 2683883 CGTGCCGGGCTATCA GCCG GTGCAGGG CGGC TTTTTCCTGTGGCTG Pden_2672 2682975 - 2684168 + | aminotransferase, class I and II TERM 1755 2685301 - 2685281 - g 75 -4.5 -4.56597 | GGTGCCGCCGAAAAA GCCCGTCCC CTC GCGCCAGGC GCAATCCGAGGCGCA Pden_2673 2684172 - 2686856 + | cell divisionFtsK/SpoIIIE TERM 1756 2686900 - 2686877 - T 70 -10.9 -3.35813 | opp_overlap 2686878, overlap 2686878 CCGCATCGGAACCAA GGGCCGGGC CGTTGC GCCCGGCCT TTTTCGTTGCGCGCC TERM 1757 2686899 - 2686878 - T 70 -14.4 -2.61274 | opp_overlap 2686878, overlap 2686877 CGCATCGGAACCAAG GGCCGGGC CGTTGC GCCCGGCC TTTTTCGTTGCGCGC TERM 1758 2686878 - 2686899 + T 100 -14.4 -4.8622 | opp_overlap 2686878 2686877 CGCATCGGAACCAAG GGCCGGGC CGTTGC GCCCGGCC TTTTTCGTTGCGCGC Pden_2674 2687822 - 2686926 - | hypothetical protein Pden_2675 2689010 - 2687928 - | secretion protein HlyD family protein TERM 1759 2688969 - 2688953 - G 77 -15.1 -3.19138 | overlap 2688951 AAAGCACGATCAACA GGCCGGC CAG GCCGGCC GCCAGGGCAATCAGC Pden_2676 2690668 - 2689007 - | putative transport protein transmembrane Pden_2677 2691126 - 2690665 - | MarR family transcriptional regulator TERM 1760 2691188 - 2691160 - R 89 -18.2 -3.07816 | gap 1, opp_overlap 2691158 2691162, overlap 2691162 GTCGCAGGTATTCAA GACCCCGCCGCGC GGCT GCG-GGCGGGGTC CATTGCTGCGGCCTT TERM 1761 2691186 - 2691162 - R 80 -15 -3.09878 | gap 1, opp_overlap 2691158 2691162, overlap 2691160 CGCAGGTATTCAAGA CCCCGCCGCGC GGCT GCG-GGCGGGG TCCATTGCTGCGGCC TERM 1762 2691162 - 2691186 + r 74 -15 -2.56596 | gap 1, opp_overlap 2691162 2691160, overlap 2691158 CGCAGGTATTCAAGA CCCCGCCGCGC GGCT GCG-GGCGGGG TCCATTGCTGCGGCC Pden_2678 2695722 - 2691217 - | hypothetical protein TERM 1763 2693871 - 2693861 - G 71 -2.4 -4.56775 | ACGCTGCCCGAAAAA TCCG GGT CGGC GACAGACAGGTCGGG TERM 1764 2694870 - 2694829 - G 78 -5.7 -4.56597 | gap 1 TTGCGTGCCGAAAAA GGC-GCGATGCTGCGGCG GGACAAG CGCGGCCACGTCGCCGCC AAGTTCGGCGCGGAA TERM 1765 2695377 - 2695324 - G 73 -7.3 -4.18018 | gap 2 TTGCGGCAGGGAAAA CTCCCGCGCCT--CGGCCTGCGGTG CGCTGT CGCCGCCACCCGGCAGGCGCGGCAG GATGATGCGCTCGGC Pden_2679 2697605 - 2695722 - | surface antigen (D15) TERM 1766 2696258 - 2696244 - G 70 -8.5 -3.87815 | overlap 2696245 CTGCAGGCCGACAAA GGGGG TGATG CCCCC CGACAGCCAATAGCC TERM 1767 2697563 - 2697598 + g 70 -3.9 -4.43879 | opp_overlap 2697545, overlap 2697573 CCGCGCCGGTTCCCA GCACGATTACGGCAG CCGTTC CTGCCTTGATCCAGC TTTTCATTGCCTGAT Pden_2680 2698620 - 2697697 - | glucokinase TERM 1768 2698176 - 2698122 - G 83 -14.9 -3.6502 | gap 1, overlap 2698123 GATCGGCCACCGAAA GCGGCAGGCGGGTATGGCCTTCCTCG GCCT CGAGGCAGGCGAT-CCCGCCGTCCGG CAGCACCTTGACCGC TERM 1769 2698175 - 2698123 - G 81 -18.4 -2.78798 | gap 1, overlap 2698122 ATCGGCCACCGAAAG CGGCAGGCGGGTATGGCCTTCCTCG GCCT CGAGGCAGGCGAT-CCCGCCGTCCG GCAGCACCTTGACCG TERM 1770 2698726 - 2698745 + H 79 -5.6 -4.67353 | gap 1, overlap 2698726 AGAACTTTTCGGGAA CCC-CGGCG GGT CGGCGCGGG TTTTTCCGTCGATCA Pden_2681 2698786 - 2699229 + | hypothetical protein Pden_2682 2699299 - 2700690 + | S-adenosyl-L-homocysteine hydrolase Pden_2683 2700753 - 2701202 + | histidine triad (HIT) protein TERM 1771 2701351 - 2701333 - g 79 -8 -4.4773 | CGACATGAAGGAAAA GCTGGGCG TCA CGCCCGAC ATGGAGTTGCTGACC Pden_2684 2701280 - 2701621 + | hypothetical protein Pden_2685 2702327 - 2701707 - | enoyl-CoA hydratase/isomerase Pden_2686 2702411 - 2703961 + | hypothetical protein TERM 1772 2704002 - 2704038 + F 88 -15.8 -3.30124 | gap 1, overlap 2703970 2703976 2704003 CCCTGACGGATCGCA TTGCGGGGGCCG-GGCG TTGT CGTCGCGGCCCCCGCGC TTATCGAAGGTGAAC TERM 1773 2704003 - 2704037 + F 89 -19.3 -2.57931 | gap 1, overlap 2703970 2703976 2704002 CCTGACGGATCGCAT TGCGGGGGCCG-GGCG TTGT CGTCGCGGCCCCCGCG CTTATCGAAGGTGAA Pden_2687 2704057 - 2705409 + | peptidase U62, modulator of DNA gyrase Pden_2688 2705396 - 2706217 + | inositol monophosphatase Pden_2689 2706278 - 2706823 + | flavin reductase domain-containing protein Pden_2690 2707306 - 2706830 - | hypothetical protein Pden_2691 2708035 - 2707385 - | hypothetical protein Pden_2692 2710103 - 2708037 - | hypothetical protein TERM 1774 2710012 - 2710049 + g 74 -13.3 -3.3506 | gap 1, opp_overlap 2710004, overlap 2710001 CAGATCAGCGGCAGC CCGGCCCGCACGGC-GCG GGC CGCGGGCTTGCGGGCGGG TTCTGCGGGTTTCAG Pden_2693 2710759 - 2710100 - | paraquat-inducible protein A TERM 1775 2710633 - 2710662 + g 74 -12.1 -3.66178 | gap 1, overlap 2710637 GCCGGTCGGGCGGCA CCAGCGCGCCGCCG CAG CGGCGGCATG-TGG TTTCGGATTCGGGCC Pden_2694 2711436 - 2710756 - | paraquat-inducible protein A TERM 1776 2710902 - 2710885 - G 75 -10.5 -4.10161 | opp_overlap 2710895, overlap 2710895 GATCAGCCCGCAAAA GGCCCAG AATG CCGGGCC CAGGCTGATATTCGC Pden_2695 2711699 - 2712499 + | putative chemotaxis MotB protein Pden_2696 2712587 - 2713927 + | hypothetical protein flgK 2713983 - 2715443 + | flagellar hook-associated protein FlgK Pden_2698 2715440 - 2716459 + | putative flagellar hook-associated protein flgI 2716456 - 2717556 + | flagellar basal body P-ring protein TERM 1777 2718474 - 2718455 - T 71 -9.2 -3.71284 | overlap 2718450 GCTGGAGGAAGAGAA TGCGGCCC TGAA GGCCCGCA GCCTCGATGCCGACG Pden_2703 2720194 - 2719808 - | transposase, IS4 family protein Pden_2704 2720559 - 2720191 - | transposase and inactivated derivative TERM 1778 2720720 - 2720702 - R 75 -3 -4.72333 | overlap 2720703 AAGGACACCCAAAAA TCGGCACG GGT CTTGCTGA TACAGCACGAAACGC Pden_2705 2721524 - 2720874 - | carbonate dehydratase Pden_2706 2721656 - 2722045 + | hypothetical protein Pden_2707 2722118 - 2723521 + | leucyl aminopeptidase Pden_2708 2723518 - 2724366 + | NLP/P60 protein Pden_2709 2724389 - 2725444 + | NAD(P) transhydrogenase subunit alpha Pden_2710 2725508 - 2726692 + | glucose sorbosone dehydrogenase Pden_2711 2727247 - 2726876 - | hypothetical protein Pden_2712 2727944 - 2727297 - | hypothetical protein TERM 1779 2727465 - 2727441 - G 73 -7.2 -4.18018 | gap 2 CGGGTGCAGGGAAAA GCC-CAGC-CGA GCC TCGAGCTGCGGC AGGTCGGCGCCCAGA TERM 1780 2727620 - 2727586 - G 71 -9.9 -3.72576 | GGGTCGCGCAGGAAA TCGGCAAAGCCGGCC GCCTT GGCCAGCCGCACCGA GGGATGCGCAAAGCC mutL 2729761 - 2727941 - | DNA mismatch repair protein Pden_2714 2731118 - 2729805 - | peptidase M16 domain-containing protein Pden_2715 2732533 - 2731115 - | peptidase M16 domain-containing protein Pden_2716 2733206 - 2732634 - | hypothetical protein Pden_2717 2733921 - 2733238 - | lipoprotein signal peptidase TERM 1781 2733296 - 2733329 + g 70 -14.5 -2.71712 | gap 1, overlap 2733295 2733322 2733323 GCCAGCTCGCCCTGC CCCTCGGGCTCCGACG GGG CGTCGG-GCGCGCGGG ATTTCGCCGGGCGCG TERM 1782 2733322 - 2733365 + g 75 -10.2 -4.07687 | gap 1, overlap 2733296 2733295 2733323 CGACGGGGCGTCGGG CGCGCGGGATTTC-GCCGGGC GCG GCCTGGCAGACGTCTTGCGCC TTTTCGCCGCCGGCT TERM 1783 2733846 - 2733856 + g 71 -2.4 -4.56597 | opp_overlap 2733845, overlap 2733816 CATTGCGCCAGACAC GCGG CGG CGGC TTTTTCGAGCGCCGC purH 2735510 - 2733921 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1784 2734415 - 2734377 - G 100 -16.8 -3.96148 | GCCCTGCACCAGAAA GCCGC-CCGCGACCTGGC GGAAG GCCAGGCC-CGGCGCGGC CGGATCGGGCAGCCC Pden_2719 2737199 - 2735550 - | heparinase II/III family protein TERM 1785 2737235 - 2737247 + r 76 -9.1 -4.07568 | CGGCGCAACCTTAGG TCCGC TCG GCGGA TTTTCGCAAGCGCGC Pden_2720 2738837 - 2737230 - | Fmu (Sun) domain-containing protein Pden_2721 2738891 - 2740060 + | RND family efflux transporter MFP subunit TERM 1786 2741260 - 2741270 + G 78 -8.2 -4.25104 | overlap 2741249 GTTCGCGATGGTGCT GGCC ATC GGCC TTTTGGTGGACGACG TERM 1787 2741882 - 2741929 + G 70 -9.3 -3.87815 | gap 3, overlap 2741877 2741883 GAATCGGTCTTCGTC G-CCATGGGCTTCGGCTTTTCGGG CAC CTCGCAAAGCCGG-GCC-ATGGTC TTTGTCAAGCTGCGC TERM 1788 2741883 - 2741927 + G 73 -13 -3.52906 | gap 2, overlap 2741877 2741882 AATCGGTCTTCGTCG CCATGGGCTTCGGCTTTTCGGG CAC CTCGCAAAGCCGG-GCC-ATGG TCTTTGTCAAGCTGC TERM 1789 2742301 - 2742250 - g 72 -6.5 -4.3129 | gap 1, opp_overlap 2742277 CATCGACCAGCAAAA GGCGGAAAGCCTGGGGGTCA-GCC TGTCG GGCGTGAACGCCATGCTCTCGACC ATCTTCGCCGGGACC Pden_2722 2740064 - 2743162 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein Pden_2723 2743159 - 2744202 + | selenophosphate synthetase Pden_2724 2744297 - 2744662 + | hypothetical protein Pden_2725 2744730 - 2745149 + | hypothetical protein Pden_2726 2745472 - 2746125 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase Pden_2727 2746148 - 2747542 + | TolC family type I secretion outer membrane protein Pden_2728 2747569 - 2748357 + | hypothetical protein Pden_2729 2749604 - 2748435 - | peptidase M23B TERM 1790 2748668 - 2748717 + g 78 -12 -3.6968 | overlap 2748696 CGACGGTGCCGCTAC CGGCGGCTGCAACGGTGCTGCC CGGCGC GGCAGCAATGTCGATGCCGTCG TTCTTGCCCTTCTGA TERM 1791 2749420 - 2749471 + g 76 -14.2 -3.53012 | gap 1, opp_overlap 2749418 GGATAGGAGATCACG CCGCGCTGGTCG-GGGGCCGGCCGA GGC TGGGCCCGCGCCGCGGCCTGGGCGG TTTCCAACCCGCCGC Pden_2730 2750286 - 2749636 - | protein-L-isoaspartate O-methyltransferase TERM 1792 2749885 - 2749849 - G 78 -12.1 -3.75169 | opp_overlap 2749878 CATGATGCGATCAAA GGGCGCCTGCTCGGGCA GCC CGCGCGAACCGTCGCCC ACCAGCGCCGTGATG Pden_2731 2751089 - 2750295 - | stationary-phase survival protein SurE TERM 1793 2751709 - 2751678 - g 71 -9.5 -3.73224 | gap 3, overlap 2751679 TGATGCTTCAGGAAA GCCTGC-GCGCGCTGC ATC GC-GCGCGCCGCAG-C GGGCCGATCAAGCCG Pden_2732 2751281 - 2752204 + | hypothetical protein Pden_2733 2752201 - 2752998 + | hypothetical protein Pden_2734 2754142 - 2752985 - | hypothetical protein TERM 1794 2753440 - 2753402 - G 78 -5.9 -4.60487 | gap 1, opp_overlap 2753415 CAGGATGTCGAAAAA GGCGCGCGTCAGATAGGG CCGG CCCCATTTT-CGCCCGCC GGTATCCTGGTAGAA Pden_2735 2754918 - 2754163 - | glycerophosphoryl diester phosphodiesterase TERM 1795 2754813 - 2754844 + g 100 -16.7 -4.07568 | gap 1 CGATGCCGTAGCCGG CAGCGATGGCGGCG CGGAA CGCCGCCAT-GCTG TTTTCCGGCACGCCC Pden_2736 2755358 - 2754918 - | endoribonuclease L-PSP Pden_2737 2755820 - 2755368 - | hypothetical protein Pden_2738 2759369 - 2755866 - | chromosome segregation protein SMC TERM 1796 2756172 - 2756187 + g 72 -3.2 -4.56597 | opp_overlap 2756172 GCCACCCGACAAAAG GCTGAG CGTG CTGAGC TTTTTGCCCGGAGGC TERM 1797 2757260 - 2757291 + g 73 -7.8 -4.11692 | gap 1, overlap 2757269 CGTCGGACAGCCCGC GCTCGGCCTCG-CGC CTT GCGTCGCGGGCGCGC TTTTCGGCCTCGGTC TERM 1798 2757862 - 2757911 + g 80 -16.9 -3.15544 | overlap 2757865 TCGCCCTCGGCCTCG GCCCTCGCCGCACGGGCGGCGGA TTCC TCGGTCTCCAGCGCGGCGCGGGC TTCCTCGGCGTCGGC TERM 1799 2759544 - 2759559 + G 78 -8.2 -4.32034 | overlap 2759540 GGCCTTTTGCTGCCC GGCCCG GTGC TGGGCC TTTTGCTGCTGGTCC Pden_2739 2759463 - 2759816 + | LrgA family protein Pden_2740 2759813 - 2760529 + | LrgB family protein Pden_2741 2761012 - 2760542 - | hypothetical protein TERM 1800 2761098 - 2761079 - R 100 -12.8 -4.8622 | GCCCGCAACGAAAAA GGCCGCCC CGCA GGACGGCC CAGCCAATGCGCGGC Pden_2742 2761448 - 2761122 - | hypothetical protein TERM 1801 2761521 - 2761551 + H 81 -16.8 -2.7736 | overlap 2761518 ATCCTGCCTCATAGG CGGCACTGGCCGGC TTA GCCGATCGGTGCCG TGATTCGGTATGCCT Pden_2743 2761790 - 2762353 + | elongation factor P Pden_2744 2762441 - 2763574 + | acetyltransferase-like TERM 1802 2763731 - 2763742 + F 76 -5.8 -4.56597 | overlap 2763687 AACCGCCGCCGCGGC TCGG AGGC CCGA TTTTTCCGCGCCGCG Pden_2745 2763832 - 2764896 + | putative sugar uptake ABC transporter periplasmic solute-binding protein precursor Pden_2746 2764956 - 2766530 + | ABC transporter related TERM 1803 2767140 - 2767170 + G 75 -5.3 -4.56597 | gap 1, overlap 2767153 CCGCAAGCGCGAGGA GGCGGTGGGCATCG TGGA CGA-GCCGTTCGCC TTTTTCGCCGCCAAG Pden_2747 2766523 - 2767707 + | inner-membrane translocator TERM 1804 2768345 - 2768396 + G 87 -22.2 -2.73441 | gap 1, overlap 2768345 GGGGCTGTTTGCCCT GCGCGCCGCCGCCCTGCTGCGGGGC CTC GCGCCGGAGCAGG-CGGCGGGGCGG CTTTCGGGCCTGCTC TERM 1805 2768345 - 2768397 + G 100 -22 -3.56092 | overlap 2768345 GGGGCTGTTTGCCCT G-CGCGCCGCCGCCCTGCTGCGGGGC CTC GCGCCGGAGCAGG-CGGCGGGGCGGC TTTCGGGCCTGCTCA Pden_2748 2767704 - 2768606 + | 2-keto-3-deoxy-galactonokinase Pden_2749 2768603 - 2769205 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Pden_2750 2769202 - 2770044 + | SMP-30/gluconolaconase/LRE domain-containing protein Pden_2751 2770041 - 2771051 + | aldose 1-epimerase Pden_2752 2771095 - 2771817 + | GntR family transcriptional regulator Pden_2753 2772703 - 2771858 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase Pden_2754 2773470 - 2772733 - | short-chain dehydrogenase/reductase SDR TERM 1806 2773551 - 2773531 - R 100 -16.1 -4.41047 | overlap 2773545 ACCCCGCAAGGAAAA GGGCCGCCC GAA AGGCGGCCC CACGGATCACGCTTC Pden_2755 2775009 - 2773558 - | aldehyde dehydrogenase Pden_2756 2775171 - 2775827 + | peroxidase TERM 1807 2775869 - 2775836 - T 77 -14.6 -2.79492 | opp_overlap 2775842, overlap 2775842 GGCGTAAGGCCAAAT CGCAAAGGCCGCGG CACCGC CCGCGGCCTTTTCA CCCTCGCGCCAGCCG TERM 1808 2775863 - 2775842 - T 86 -14.4 -3.71917 | opp_overlap 2775842, overlap 2775836 AGGCCAAATCGCAAA GGCCGCGG CACCGC CCGCGGCC TTTTCACCCTCGCGC TERM 1809 2775842 - 2775863 + T 93 -14.4 -4.11216 | opp_overlap 2775842 2775836 AGGCCAAATCGCAAA GGCCGCGG CACCGC CCGCGGCC TTTTCACCCTCGCGC TERM 1810 2775891 - 2775930 + T 75 -12.3 -3.44848 | overlap 2775889 CGCCAGCCGCCGCTT GTGGCGCCATGC-GATCAG CTTG TTGATCAGC-TGGCGCCGC TGTTTGATCAGCCCG Pden_2757 2776655 - 2775867 - | glycosyl transferase family protein TERM 1811 2776144 - 2776122 - G 73 -10.5 -3.85817 | opp_overlap 2776140 ATGCGTGCTGACAAA GGTCTCGGC CCCCT GCCGCGACC AGATCAGCCCGGTCG TERM 1812 2776448 - 2776392 - G 73 -10.1 -3.85698 | gap 1 GCCGCTGTCCAGAAA CCGCCGCGCGCAATCGAGAT-GGCTG AGATAA CAGCCGATCTCGCCCCCGCGCAAAGG CCGGCCCATATAGGC Pden_2758 2777455 - 2776652 - | hypothetical protein TERM 1813 2777482 - 2777461 - R 95 -13 -4.25104 | opp_overlap 2777457 GGGCCGTCATGAAAA GGACCCGG ACGATG CCGGGTCC CTCCTGATGTCGCGA Pden_2759 2779713 - 2777503 - | polynucleotide phosphorylase/polyadenylase TERM 1814 2779961 - 2779918 - R 93 -17.4 -3.58343 | gap 1, opp_overlap 2779927, overlap 2779920 2779921 CGGAGGACTTGGAAA GAGCGCCGCTTGCCAGGGCGA TAT TCGCCC-GGCAAGCGGGTCGC AAGGATGCCGAACGC TERM 1815 2779959 - 2779920 - R 93 -18.6 -3.36991 | gap 1, opp_overlap 2779927, overlap 2779918 2779921 GAGGACTTGGAAAGA GCGCCGCTTGCCAGGGCGA TAT TCGCCC-GGCAAGCGGGTC GCAAGGATGCCGAAC TERM 1816 2779957 - 2779921 - R 89 -19.6 -2.61873 | gap 2, opp_overlap 2779927, overlap 2779920 2779918 AGGACTTGGAAAGAG CGCCGCTTGCCAGGGCGA TAT TCGCCC-GGCAAGCGG-G TCGCAAGGATGCCGA TERM 1817 2780100 - 2780077 - R 100 -11.6 -4.86621 | ATGCGGAACGAAAAA CGCCCGCGGC TTTC GCAACGGGCG CCTCGAACTTCCGAA TERM 1818 2780131 - 2780117 - R 74 -11.4 -3.57561 | CTCGAACTTCCGAAA GCGTGC CTG GCACGC AGCAGCCTGCCTTAG rpsO 2780412 - 2780143 - | 30S ribosomal protein S15 Pden_2761 2781487 - 2780558 - | type I secretion target repeat-containing protein TERM 1819 2781458 - 2781440 - G 73 -7.4 -4.1891 | overlap 2781450 GCCCGCGAACAGAAA GCTGATCA GAC TGCTCAGC AGGAACATGGCACTA Pden_2762 2782247 - 2781594 - | alanine racemase domain-containing protein TERM 1820 2781841 - 2781855 + g 73 -7 -4.11216 | opp_overlap 2781825 GCATCGGCCTCATCG GGCAGG ATG CCGGCC TTTTGCGGCTCGGCG TERM 1821 2781912 - 2781893 - G 76 -7.1 -4.26076 | gap 1, opp_overlap 2781900 TCACCTGCACGAAAA GCTGCGGG CAGGC CCCGC-GC ACCTGCACCTGCCGG TERM 1822 2782272 - 2782292 + r 81 -14 -3.47431 | opp_overlap 2782272, overlap 2782265 ATTTCCAAAAGAAAA GAGCGGGC GCAAG GCCCGCTC TTCCTGTTTCCGTAT TERM 1823 2782292 - 2782272 - R 100 -14 -5.08255 | opp_overlap 2782272 2782265 ATTTCCAAAAGAAAA GAGCGGGC GCAAG GCCCGCTC TTCCTGTTTCCGTAT Pden_2763 2783438 - 2782317 - | outer membrane porin Pden_2764 2783615 - 2784124 + | hypothetical protein leuS 2784200 - 2786734 + | leucyl-tRNA synthetase Pden_2766 2786721 - 2787206 + | secreted periplasmic protein TERM 1824 2787987 - 2788043 + G 82 -6.2 -4.72272 | gap 1, overlap 2787992 2788028 TCCGGGCGCTGCATG CCGG-GGCCTCGGACCCGGGCGGGCCG GGAG CGGGGCTTTCGCGGCTGCGGCCGCCGG TTTTTGGTCCGCGCC TERM 1825 2787992 - 2788022 + G 71 -11.7 -3.55444 | overlap 2787987 GCGCTGCATGCCGGG GCCTCGGACCCGG GCGGG CCGGGAGCGGGGC TTTCGCGGCTGCGGC Pden_2767 2787203 - 2788231 + | DNA polymerase III, delta subunit TERM 1826 2788972 - 2789003 + G 74 -10.8 -3.78022 | GGCGGGATCTATGAG GTCTCGGCCGCG ATGCGCGA CGGGGCCGAGGC TTTCGTCGATCTGGC Pden_2768 2788228 - 2789433 + | hypothetical protein Pden_2769 2789996 - 2789409 - | glutathione S-transferase domain-containing protein Pden_2770 2790118 - 2791362 + | major facilitator transporter TERM 1827 2791358 - 2791369 + F 83 -5.8 -4.88407 | CGCGGCTGGCTTCGG CCTG ACGA CAGG TTTTTGCTTGACTGG Pden_2771 2791452 - 2792228 + | 5'-nucleotidase TERM 1828 2793042 - 2793058 + G 82 -15.1 -3.53091 | opp_overlap 2793033 GAACTATGCCGCCTC GGCCGCG ATC CGCGGCC TTTGGGCCGGCCCCT Pden_2772 2792380 - 2793573 + | major facilitator transporter Pden_2773 2793566 - 2794612 + | glycosyl transferase, group 1 TERM 1829 2794838 - 2794870 + G 82 -15.6 -3.53012 | gap 1, opp_overlap 2794833 2794829 CCGAAAGCCATGGCA GCCGCACGGACTGGC TGGC GCTGG-CCGTGCGGC TTTCCGAAGCCGACC Pden_2774 2794609 - 2795223 + | hypothetical protein Pden_2775 2795325 - 2796347 + | aspartate-semialdehyde dehydrogenase TERM 1830 2796364 - 2796387 + F 86 -16 -3.27525 | opp_overlap 2796355, overlap 2796359 CCCAAACGGATATGT GAGGGCGTCC CCCG GGGCGCCCTC TTGCATTTCCGGCGC Pden_2776 2796442 - 2798079 + | hypothetical protein Pden_2777 2798905 - 2798267 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 1831 2798448 - 2798398 - G 70 -8.3 -3.85698 | gap 2 CGGCCCCGTCAGAAA TGCCGCGCAGCCCGATCAGCGGT AGGCCGA AGCGCTGG-CAGGC-GCGCAGCA CCGCAAAGCTTTCCA Pden_2778 2800606 - 2799011 - | putative PAS/PAC sensor protein TERM 1832 2799855 - 2799891 + g 95 -18.7 -3.73775 | GCCCGGACCGCCGCA TCGGCGGGCAGGGCGAT GGC AACGGTCTGCCCGCCGA TTTCGTGCAGGTGGC Pden_2779 2802070 - 2800682 - | integral membrane sensor signal transduction histidine kinase Pden_2780 2802107 - 2802757 + | electron transport protein SCO1/SenC TERM 1833 2802935 - 2802906 - g 75 -4.7 -4.65895 | overlap 2802908 CGTGCGATGGAAAAA CGCGGCTTCGCCG TCAC CCGCGCCGCCTCG GTCGCCGAGGCCCGC Pden_2781 2802810 - 2803358 + | two component Fis family transcriptional regulator Pden_2782 2803442 - 2803750 + | histone family protein nucleoid-structuring protein H-NS TERM 1834 2803760 - 2803780 + T 100 -16.9 -5.27335 | ATCTGAGCCCGTTTC CCCCGCATC CCT GATGCGGGG TTTTTCTTTCCGGGA Pden_2783 2804404 - 2803796 - | metal dependent phosphohydrolase TERM 1835 2804064 - 2804046 - G 71 -11.6 -3.57144 | opp_overlap 2804030 2804052, overlap 2804047 GCCGGCAGGCCGAAA CGGCGGTG GAT CGCCGCCG CCAGCCGCGCGTCCA TERM 1836 2804517 - 2804493 - R 100 -16.4 -4.2349 | overlap 2804436 GCCGGACAGCGAAAA GCCCGCGGCC TTGGG GACCGCGGGC CGAAACGGGTCGATC Pden_2784 2805085 - 2804552 - | preprotein translocase subunit SecB Pden_2785 2805713 - 2805135 - | FxsA cytoplasmic membrane protein Pden_2786 2805825 - 2806481 + | import inner membrane translocase, subunit Tim44 TERM 1837 2806633 - 2806613 - g 71 -2.3 -4.59109 | CAGACCGCTGAAAAA GCCGCCCGC CAT GCCGCCCGC CATGCCGCAAGTCGC Pden_2787 2806485 - 2807093 + | Smr protein/MutS2 Pden_2788 2808163 - 2807090 - | protein of unknown function DUF900, hydrolase family protein TERM 1838 2808000 - 2807953 - G 72 -14.2 -3.12351 | overlap 2807957 GGCGGGGATAGGTAA TCGAGCCGGGCCGGCG-CTCGG GCGGGA CCGAGACATCGACCCGGC-CGA AGCTGACCCCCTCTT Pden_2789 2808402 - 2808226 - | hypothetical protein TERM 1839 2808453 - 2808398 - G 71 -9.7 -3.76634 | opp_overlap 2808399, overlap 2808399 2808402 2808435 ATTCCAAATATATAA CTCATGGGCGTTCCCGTCCGTTG-ACC TGCC GGCACAACGGACGGGACCACGC-CGCG GTTCCCTCAGAGCAC hslU 2809767 - 2808460 - | ATP-dependent protease ATP-binding subunit Pden_2791 2810516 - 2809962 - | ATP-dependent protease peptidase subunit Pden_2792 2810620 - 2811540 + | hypothetical protein Pden_2793 2811867 - 2811544 - | thioredoxin Pden_2794 2815295 - 2811921 - | UvrD-like DNA helicase domain-containing protein TERM 1840 2813742 - 2813754 + g 78 -10.5 -4.14392 | CGGGTCGGTCCAATC GCCCG GCT CGGGC TTTTCGGGCTTGGGG TERM 1841 2815041 - 2814989 - G 90 -13.2 -4.07568 | gap 1, overlap 2814990 TGGCGCGGGCGAAAA GCCGGCGCGCGGCGGGCAGGTCGGG GGCG CCCGCCTCGCCCAGC-CGCGCCAGT TCGGCGCGCAGTTCC TERM 1842 2815040 - 2814990 - G 78 -16.7 -3.04398 | gap 1, overlap 2814989 GGCGCGGGCGAAAAG CCGGCGCGCGGCGGGCAGGTCGGG GGCG CCCGCCTCGCCCAGC-CGCGCCAG TTCGGCGCGCAGTTC Pden_2795 2818227 - 2815285 - | putative helicase/exonuclease TERM 1843 2816455 - 2816482 + g 70 -14.8 -2.70932 | gap 1 CGACAGCCACGGATC GGGCGGCAGCGCC TGC GGC-CAGCCGCCC TCGTTCAACCCCGAC TERM 1844 2818072 - 2818038 - G 79 -11.2 -4.08216 | overlap 2818021 2818022 GCAGCCGGGGCAAAA GCAGCGGCCCGCGCTG GAT CAGCGCCTGGCGCAGC GCCATCAGCGACTGG Pden_2796 2818891 - 2818220 - | nucleotidyl transferase Pden_2797 2820306 - 2818888 - | hypothetical protein Pden_2798 2821158 - 2820352 - | dihydrodipicolinate reductase rbfA 2821228 - 2821644 + | ribosome-binding factor A Pden_2800 2821634 - 2822389 + | hypothetical protein truB 2822391 - 2823287 + | tRNA pseudouridine synthase B Pden_2802 2824120 - 2823284 - | hypothetical protein Pden_2803 2825167 - 2824229 - | beta-lactamase domain-containing protein TERM 1845 2824530 - 2824557 + g 71 -10.5 -3.76402 | overlap 2824522 2824531 GGCGTGTGGCCGTGG GCCTGCTCGGC CTTGAT GCCGGGCAGGA TTTCCTCGGTCCCCT TERM 1846 2825063 - 2825045 - G 100 -17.4 -3.85698 | GGCGCGGCCGAGAAA GGCGGGCG CCT CGCCCGCC GGCTGGGCGGGGGCG Pden_2804 2825889 - 2825242 - | pseudouridylate synthase Pden_2805 2826512 - 2825886 - | lysine exporter protein LysE/YggA TERM 1847 2826177 - 2826220 + g 100 -16 -4.07568 | gap 1 GATGTTCCAGGGCCG GCTGGCGGCGCGGGCGCGG GGATCGA CCTCGCCCGCGTT-CCAGC TTTTCCAGGCCAGGA Pden_2806 2826957 - 2826562 - | glutathione-dependent formaldehyde-activating, GFA Pden_2807 2827387 - 2826935 - | hypothetical protein Pden_2808 2827812 - 2827435 - | hypothetical protein Pden_2809 2828736 - 2827915 - | NAD-dependent epimerase/dehydratase Pden_2810 2829587 - 2828733 - | glycosyl transferase family protein TERM 1848 2829050 - 2829024 - G 70 -12.2 -3.28712 | GGTGCGGCGCCAGAA CTGGCCAGGCTG GTC CAGACGGGCCAG CATCGCCCGATACGT TERM 1849 2829537 - 2829555 + g 78 -16 -3.05816 | opp_overlap 2829537 CGCCAGGGTGACAAA GGCGCGGT CGG ACCGCGCC TTGCCTGCCGGGTGA TERM 1850 2829555 - 2829537 - G 93 -16 -3.87815 | opp_overlap 2829537 CGCCAGGGTGACAAA GGCGCGGT CGG ACCGCGCC TTGCCTGCCGGGTGA Pden_2811 2830804 - 2829584 - | NAD-dependent epimerase/dehydratase Pden_2812 2830922 - 2831401 + | BadM/Rrf2 family transcriptional regulator Pden_2813 2831555 - 2832403 + | shikimate 5-dehydrogenase Pden_2814 2832400 - 2832996 + | dephospho-CoA kinase Pden_2815 2832989 - 2833708 + | DNA polymerase III, epsilon subunit TERM 1851 2834293 - 2834320 + G 77 -3.3 -4.78107 | overlap 2834299 CTTGCGCAACTGGCT GATCGGCGCCC TGCCGT GGATGGCGATC TTTTTCATCGTGCTG Pden_2816 2833781 - 2834662 + | putative ribonuclease BN Pden_2817 2834698 - 2835090 + | glutathione-dependent formaldehyde-activating, GFA Pden_2818 2835727 - 2835095 - | lysine exporter protein LysE/YggA TERM 1852 2835450 - 2835431 - G 74 -12.8 -3.59979 | GTCGCGGACCTGAAA GGCCGAGC GTCC GCCCGGCC TGACGGCCTGCCAGG Pden_2819 2837624 - 2835831 - | signal transduction histidine kinase Pden_2820 2838227 - 2837634 - | RNA polymerase sigma factor TERM 1853 2837847 - 2837814 - G 85 -10.9 -4.34402 | opp_overlap 2837839 TTCCTCATAGGAAAA GCCCGAGGCGCCCAC CAGG ATCAGCGCCTCGCGC TGCTCGTCGGGCAAT Pden_2821 2838379 - 2838233 - | hypothetical protein TERM 1854 2838316 - 2838335 + g 72 -4.3 -4.55689 | overlap 2838287 2838311 2838308 GCTCGTAGACTCGGC GCAGATT CTCGTC GATCTGC TTTTCTATGGCTGCT Pden_2822 2838473 - 2839276 + | two-component response regulator TERM 1855 2839365 - 2839390 + T 86 -14 -3.78775 | opp_overlap 2839364 2839363 2839360 2839356 GAAGAACGAAGAAGC GGCGGGCAGG AGGCAA CCTGCCTGCC TTTCGTCATCAGGCG Pden_2823 2840286 - 2839399 - | 2-nitropropane dioxygenase, NPD Pden_2824 2841512 - 2840283 - | aldo/keto reductase Pden_2825 2843560 - 2841629 - | selenocysteine-specific translation elongation factor TERM 1856 2842478 - 2842524 + g 70 -12.7 -3.28712 | overlap 2842479 ACGCTCGGGTCGGGT GCGGTGGCGGGCGGGCGCGCG CAGGT CGACCAGCCGCCCGCCGCCGA TTGTGCGCCGGGCCG TERM 1857 2842479 - 2842523 + g 73 -16.2 -2.57132 | overlap 2842478 CGCTCGGGTCGGGTG CGGTGGCGGGCGGGCGCGCG CAGGT CGACCAGCCGCCCGCCGCCG ATTGTGCGCCGGGCC Pden_2826 2844488 - 2843580 - | formate dehydrogenase accessory protein FdhE Pden_2827 2845199 - 2844513 - | formate dehydrogenase, gamma subunit Pden_2828 2846197 - 2845199 - | formate dehydrogenase, beta subunit Pden_2829 2848656 - 2846194 - | formate dehydrogenase, alpha subunit TERM 1858 2848079 - 2848097 + g 75 -10.3 -4.07687 | TCGGGCGCCGAGCAT TCGCCGA TCATC TCGGCGA TTTTCAGGAAGCGAT Pden_2830 2849277 - 2848678 - | molybdopterin oxidoreductase Fe4S4 region TERM 1859 2849382 - 2849363 - R 100 -12.8 -4.72272 | GCTTGGCACGAAAAA GGCGCAGC CGTG GCCGCGCC CTCAAGTTCTTGTTA Pden_2831 2850506 - 2849430 - | ferredoxin Pden_2832 2851744 - 2850506 - | Rieske (2Fe-2S) domain-containing protein SEQUENCE gi|119385557|ref|NC_008687.1| Paracoccus denitrificans PD1222 chromosome 2, complete sequence (length 1730097) dnaA 405 - 1751 + | chromosomal replication initiation protein TERM 1 2119 - 2134 + G 71 -11.8 -3.64703 | CAGCTTAGCCTGGAT GCCGCC TCGG GGCGGC TTTCCGTGCAGGCCG Pden_2834 1843 - 2961 + | DNA polymerase III subunit beta TERM 2 3735 - 3759 + G 78 -12.7 -3.72576 | overlap 3752 CTGGGGGCGCATTGG GGGCCGCAGGC GAT GCCCGCCGCCC TTTCCTCAACCGGCG TERM 3 3988 - 4029 + G 76 -13.7 -3.53012 | overlap 3990 3991 GCCGGGCGCAATTTC TGGCGGTGGTGCGCGAGGC CGAG GCCTCGCGCATCATGGGTA TTTGAGAAACGGAAA TERM 4 3990 - 4027 + G 74 -14.1 -3.34398 | overlap 3988 3991 CGGGCGCAATTTCTG GCGGTGGTGCGCGAGGC CGAG GCCTCGCGCATCATGGG TATTTGAGAAACGGA TERM 5 3991 - 4026 + G 77 -17.6 -2.60496 | overlap 3990 3988 GGGCGCAATTTCTGG CGGTGGTGCGCGAGGC CGAG GCCTCGCGCATCATGG GTATTTGAGAAACGG recF 2958 - 4034 + | recombination protein F Pden_2836 5861 - 4068 - | adenine deaminase TERM 6 5025 - 5013 - G 79 -4.7 -4.79826 | opp_overlap 5017 ACACAGGATGAAAAA GCGCG GGT CGAGC CCCTTTTCGGTGATC recO 5907 - 6635 + | DNA repair protein RecO Pden_2838 6987 - 6604 - | protein of unknown function DUF306, Meta and HslJ TERM 7 6720 - 6709 - G 81 -7.2 -4.57073 | overlap 6711 GAGCGCCTGGAAAAA GGCG TGCT CGCC GCCCTCTTGCAGGCA Pden_2839 7439 - 7020 - | protein of unknown function DUF306, Meta and HslJ TERM 8 7478 - 7509 + r 74 -10 -3.80573 | opp_overlap 7473 GCCGCCATAATGCCC TAACGGCCCCCGCT GTCC AGCAGGGGCCGGCA TTTCATCCTAGTCCA Pden_2840 9172 - 7517 - | Acyl-CoA dehydrogenase TERM 9 8109 - 8119 + g 71 -2.4 -4.56597 | AAGGGATCGTCGTCG GTGC CGG GCTC TTTTTCCGCCAGGAA Pden_2841 9330 - 10103 + | hypothetical protein Pden_2842 10132 - 11280 + | succinyl-diaminopimelate desuccinylase TERM 10 11542 - 11493 - g 76 -13.6 -3.53012 | gap 3, overlap 11494 GTCGCGGTGCTGAAA TCC-GCG-CGCG-GCACCGGGGCGG GCG CCGCCCTGATCCGCGCGGCGCTGGA CGAGCTGCGCGCGCT TERM 11 11537 - 11494 - g 74 -16.6 -2.71712 | gap 1, overlap 11493 TCGCGGTGCTGAAAT CCGCGCGCGGCACCGGGGCGG GCG CCGCCCTGAT-CCGCGCGGCG CTGGACGAGCTGCGC Pden_2843 11277 - 11696 + | GCN5-related N-acetyltransferase Pden_2844 11693 - 12208 + | hypothetical protein TERM 12 12353 - 12336 - g 71 -2.5 -4.56597 | overlap 12317 GCCTCGGGTGAAAAA CCGCGCG AGAG CTGGCGG ATCGGCACCGAGCAC Pden_2845 12258 - 13637 + | glutamate--cysteine ligase TERM 13 13641 - 13663 + T 77 -11.9 -3.60098 | opp_overlap 13642, overlap 13642 TATTCCTATTGACCA AGGGCCGGG TAATC CCCGGCCCC TTTCGCATCCGGCCT TERM 14 13662 - 13642 - T 86 -15.4 -3.18383 | opp_overlap 13641 13642 ATTCCTATTGACCAA GGGCCGGG TAATC CCCGGCCC CTTTCGCATCCGGCC TERM 15 13642 - 13662 + T 78 -15.4 -2.75844 | opp_overlap 13642, overlap 13641 ATTCCTATTGACCAA GGGCCGGG TAATC CCCGGCCC CTTTCGCATCCGGCC Pden_2846 14103 - 13690 - | hypothetical protein Pden_2847 14827 - 14216 - | TetR family transcriptional regulator Pden_2848 15127 - 14837 - | phosphotransferase system, phosphocarrier protein HPr TERM 16 15052 - 15071 + g 72 -4.8 -4.46615 | overlap 15053 CGACGAATTTCGCGC TGGCCCGC GCAT GCAGGCCC TTTTCGTTGATGATC Pden_2849 15549 - 15124 - | PTS system fructose subfamily IIA component Pden_2850 16533 - 15574 - | hypothetical protein TERM 17 16167 - 16190 + g 73 -10.3 -3.90588 | gap 1 GCGGCGAGCCCTCGC CCCGCA-GCG GATGG CGCCTGCGGG TTTCGTTGAACCGTC Pden_2851 16970 - 16542 - | HPr kinase Pden_2852 17197 - 18795 + | phosphoenolpyruvate carboxykinase TERM 18 18822 - 18842 + T 95 -12.5 -4.4078 | opp_overlap 18817 18822 AATCTCAAACGCAAA GGGCGGTCC CAA GGGCCGCTC TTTTGCTTCGCACCA Pden_2853 21219 - 18955 - | ribonuclease R Pden_2854 21485 - 21264 - | putative NAD-dependent formate dehydrogenase delta subunit protein Pden_2855 22313 - 21492 - | formate dehydrogenase family accessory protein FdhD Pden_2856 25197 - 22318 - | formate dehydrogenase, alpha subunit Pden_2857 26735 - 25194 - | NADH dehydrogenase (quinone) Pden_2858 27211 - 26732 - | NADH dehydrogenase (ubiquinone), 24 kDa subunit Pden_2859 28159 - 27287 - | LysR family transcriptional regulator Pden_2860 28487 - 28248 - | phosphoribosylformylglycinamidine synthase, purS Pden_2861 29263 - 28499 - | phosphoribosylaminoimidazole-succinocarboxamide synthase Pden_2862 29411 - 29725 + | hypothetical protein TERM 19 29744 - 29762 + T 93 -17.4 -3.63627 | opp_overlap 29738 TTCGCAAGACGGCGA CGCCCCGG AAT CCGGGGCG TTTCGCATCTCAGGC Pden_2863 31109 - 29772 - | MATE efflux family protein Pden_2864 31605 - 31102 - | thioesterase superfamily protein TERM 20 31643 - 31625 - R 84 -13.8 -3.59979 | opp_overlap 31623, overlap 31626 GCGCTCGACCGTAAA GGCCCCGG TGG CCGAGGCC ACGGGGCGGGATTCG TERM 21 31650 - 31626 - R 71 -13.6 -2.75844 | gap 1, opp_overlap 31623, overlap 31625 CGCTCGACCGTAAAG GCCCCGGTGGC CGAG GCCAC-GGGGC GGGATTCGTCGTCAT Pden_2865 32110 - 31607 - | hypothetical protein Pden_2866 32188 - 32604 + | MerR family transcriptional regulator Pden_2867 32576 - 33085 + | MerR family transcriptional regulator Pden_2868 33110 - 34888 + | acyl-CoA dehydrogenase domain-containing protein TERM 22 34956 - 35014 + F 93 -15.9 -3.85165 | opp_overlap 34947 34970 34996, overlap 34957 AAAAGACCGGAATGC G-GCGCCCCGGAACACCGGGTCCGGCCGA GGT TCGGCAAGACCGGATGA-CCGGGGCGCTC TTTCCGTTTGCGGTC TERM 23 34957 - 35012 + F 100 -19.6 -3.50832 | gap 1, opp_overlap 34947 34970 34996, overlap 34956 AAAGACCGGAATGCG GCGCCCCGGAACACCGGGTCCGGCCGA GGT TCGGCAAGACCGGATGA-CCGGGGCGC TCTTTCCGTTTGCGG TERM 24 35143 - 35119 - f 73 -9.9 -3.85184 | overlap 35120 TTTAAAATACCCAAA TGCAACGCCGA CGA CCGGCGCTGCC GGCGCAGAAAGGGAA Pden_2869 35165 - 35806 + | glutathione S-transferase domain-containing protein Pden_2870 35803 - 37014 + | acetyl-CoA acetyltransferase TERM 25 37064 - 37050 - g 77 -11.4 -3.93695 | overlap 37053 TTCACCATGCAGAAA GACGCC GAC GGCGTC GCGATCGTCACCTGG TERM 26 37368 - 37343 - g 70 -8.2 -3.82084 | gap 1, overlap 37336 CCCCAAGACCAAGAA GGGCGGCAAGC CCATC GCG-GCCGCCC TGCCCGGCACCGCAC Pden_2871 37026 - 39209 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 27 39251 - 39213 - T 71 -7.4 -4.07885 | gap 1, overlap 39200 39201 CAGGCCGCCTGAAAA CGACCAGGGGGCAAGGC CACTCC GCCCTGCCCC-TCACCG TTTCCCAAATACTCA TERM 28 39308 - 39272 - T 100 -13.9 -4.27007 | opp_overlap 39275 39278, overlap 39275 CAAATACTCAAGAAA GACGAAGCGCCG-AGGG CCCGT CCCTTCGGCGCTTC-TC TGTTCCCCAAATACT TERM 29 39306 - 39275 - T 84 -16.7 -2.82104 | gap 1, opp_overlap 39275 39278, overlap 39272 ATACTCAAGAAAGAC GAAGCGCCG-AGGG CCCGT CCCTTCGGCGCTTC TCTGTTCCCCAAATA TERM 30 39275 - 39306 + T 89 -18.1 -3.07013 | opp_overlap 39272 39275, overlap 39278 ATACTCAAGAAAGAC GAAGCGCCGAGGG CCCGTC CCTTCGGCGCTTC TCTGTTCCCCAAATA TERM 31 39278 - 39303 + T 84 -14 -3.68024 | opp_overlap 39275 39272, overlap 39275 CTCAAGAAAGACGAA GCGCCGAGGG CCCGTC CCTTCGGCGC TTCTCTGTTCCCCAA Pden_2872 40356 - 39349 - | ribokinase-like domain-containing protein Pden_2873 41021 - 40353 - | endonuclease III Pden_2874 41122 - 41718 + | methylated-DNA--protein-cysteine methyltransferase TERM 32 42035 - 41977 - g 73 -15.9 -2.66435 | gap 2, overlap 41974 AGCCCCAGCAGACCA GCC-GCACCCAGCAGGGCGCCATCG-CCG GCG CGGTCGTCGGCGGCCTGATCGGCGCAGGC GAAAGCCGCTCGAAT Pden_2875 41880 - 42527 + | OmpA/MotB domain-containing protein TERM 33 42553 - 42580 + T 100 -20.6 -3.84719 | opp_overlap 42541 ACATGCAGGACGCGG GGGCCGGCAGCC GAAA GGTTGCCGGCCC TTTCCGTTTCCGCCT TERM 34 42642 - 42617 - T 100 -16.1 -4.5774 | GACGAATAAGGAAAA CCCCCGAAGCG TCTC CGCCCCGGGGG TCCAGTCACTGTCCC Pden_2876 43251 - 42697 - | F0F1 ATP synthase subunit B Pden_2877 43895 - 43248 - | F0F1 ATP synthase subunit B' TERM 35 43512 - 43533 + g 73 -12.9 -3.40403 | GATCTTGCCGGCTTC GGCGCGGGC GTCG GCCAGCGCC TTGTCATAGGCGGCC TERM 36 43829 - 43843 + g 71 -10 -3.72051 | CCGCTTCGGCGGATT CGGTGA TGA TCACCG TTTCAGATTCTTCGA Pden_2878 44208 - 43975 - | F0F1 ATP synthase subunit C Pden_2879 45014 - 44268 - | F0F1 ATP synthase subunit A Pden_2880 45358 - 45017 - | hypothetical protein TERM 37 45149 - 45131 - G 82 -16 -3.25304 | AAAGACCACCATGAA GACCGGCC GCA GGCCGGTC AGATAATCCAGCCCG Pden_2881 45545 - 45901 + | regulatory protein, ArsR TERM 38 45927 - 45960 + T 93 -18.1 -3.35344 | opp_overlap 45933, overlap 45917 CGCGGCGCCGAAACG CGAAAAGGGCCGGGC ATGT GCCCGGCCCCTTGCG TTCCTGTCATTTCAC TERM 39 45954 - 45933 - T 100 -18.7 -4.24002 | opp_overlap 45927 45917 GCCGAAACGCGAAAA GGGCCGGGC ATGT GCCCGGCCC CTTGCGTTCCTGTCA Pden_2882 47568 - 45967 - | 5'-nucleotidase domain-containing protein Pden_2883 47660 - 48034 + | hypothetical protein TERM 40 48780 - 48820 + G 72 -8.7 -4.07568 | opp_overlap 48752 48795, overlap 48798 CGACGGCCTCGCCTC GCCGCACGCCAACGAGGCC GGC GGCCTTTCCGGCGCGCCGC TTTTCGACCGCGCCA Pden_2884 48031 - 49089 + | dihydroorotate dehydrogenase 2 Pden_2885 49925 - 49086 - | serine O-acetyltransferase TERM 41 49602 - 49580 - G 70 -12 -3.38991 | overlap 49578 49583 AGCCCTTGAAGAACA GGATCGGCTG CAT CAGCCGATGC GTCGCCGGATCGCGC Pden_2886 50712 - 49990 - | hypothetical protein Pden_2887 54595 - 50705 - | putative phage host specificity protein TERM 42 51625 - 51613 - G 72 -6.9 -4.26076 | overlap 51596 GCAGGTCCAGGAAAA CCGGC CAG ACCGG GATCGGCGGCACGAA TERM 43 53356 - 53340 - G 70 -9.3 -3.86346 | overlap 53341 CCATCGCGCGAGAAA TCCGCCG CCT CGGCGGT GCCGAAGAACCGCGC Pden_2888 55039 - 54614 - | NlpC/P60 family phage cell wall peptidase Pden_2889 55854 - 55036 - | phage protein Pden_2890 56492 - 55851 - | hypothetical protein TERM 44 56307 - 56292 - G 83 -8.2 -4.56597 | CCGCGCCTCGAAAAA GGCGAC CAGC GCCGCC ACGTCGTCCAGCGAG Pden_2891 57156 - 56485 - | phage-related minor tail protein-like Pden_2892 57393 - 57181 - | hypothetical protein TERM 45 57444 - 57411 - R 74 -10.9 -3.59979 | gap 1 CCCCTCGATGCGAAA GGCCCGCGCCAGCAGC GCC GCCGCCG-CATGGGCC GCGGCCACCGGCCCG Pden_2893 57707 - 57390 - | hypothetical protein Pden_2894 58122 - 57709 - | TP901-1 family phage major tail protein Pden_2895 58554 - 58135 - | hypothetical protein Pden_2896 58901 - 58551 - | head-tail adaptor, putative Pden_2897 59515 - 58898 - | hypothetical protein Pden_2898 60810 - 59644 - | HK97 family phage major capsid protein TERM 46 60775 - 60745 - G 70 -8.8 -3.86822 | opp_overlap 60773 CAACTCCTGGACAAA GCCCAGCATCTCGG CCC CCAGGTCGCCGGGC ACGTCCGCCCCGGCC Pden_2899 61391 - 60834 - | HK97 family phage prohead protease Pden_2900 61605 - 61372 - | hypothetical protein Pden_2901 62809 - 61607 - | HK97 family phage portal protein TERM 47 62855 - 62838 - R 100 -10.5 -4.87893 | AATCCCAATGAAAAA GGGCCGC AAGC GCGACCC TTCCCAAGCCCCGAA TERM 48 62953 - 62895 - R 77 -12.9 -3.34398 | overlap 62893 TTCCGTTTCGAAATA CCCTGGGGGGAGCGTCTGCCGCCCCCC GTCCT GGGGGGCGGCAGACGCGGGGGGCAAAG CCCCCTAAAGCCCCC Pden_2902 64349 - 62958 - | hypothetical protein TERM 49 64690 - 64665 - R 100 -12.5 -5.24989 | gap 1 CGAGACATGAAAAAA GCGGCCTCGGGG TCG CCCCC-GGCCGC TTGCCCATCTCTCCC Pden_2903 66049 - 64871 - | aminodeoxychorismate lyase Pden_2904 67308 - 66046 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 50 67419 - 67378 - R 90 -15.8 -3.75153 | gap 2, overlap 67379 GCCGCGCAACGCAAA GCGCCGCCCGGCCGGCGGGC TGCC GCCC-CCGCCGGGGCGG-GC GGGTCCGGCTCAGTC TERM 51 67420 - 67379 - R 80 -15.8 -2.84878 | overlap 67378 CCGCGCAACGCAAAG CGC-CGCCCGGCCGGCGGGC TGCC GCCC-CCGCCGGGGCGGGCG GGTCCGGCTCAGTCG Pden_2905 68199 - 67429 - | enoyl-CoA hydratase/isomerase Pden_2906 69336 - 68209 - | acyl-CoA dehydrogenase domain-containing protein Pden_2907 70514 - 69333 - | acetyl-CoA acetyltransferases Pden_2908 71294 - 70527 - | short-chain dehydrogenase/reductase SDR Pden_2909 72993 - 71302 - | AMP-dependent synthetase and ligase Pden_2910 73096 - 74118 + | helix-turn-helix domain-containing protein Pden_2911 75058 - 74075 - | hypothetical protein Pden_2912 76324 - 75215 - | replication protein, putative Pden_2913 77625 - 76321 - | cobyrinic acid a,c-diamide synthase TERM 52 76630 - 76645 + g 72 -9 -4.08216 | CTTGGGCAGCTTGAT CTTCCC CGTG GGGAAG TTTTCGAAGCCATGC TERM 53 76865 - 76852 - G 73 -9.5 -3.86015 | CAGGCTGTCGAGAAA GCGCG ACAC CGCGC CGAAGAAGGTCCATT Pden_2914 78109 - 78783 + | hypothetical protein Pden_2915 78876 - 79133 + | hypothetical protein Pden_2916 79269 - 80231 + | biotin synthase TERM 54 80481 - 80495 + G 74 -12.8 -3.64703 | CGGCGGCGTTCTTCG GCGCCG AGG CGGCGC TTTACATGGGCGGCG Pden_2917 80228 - 81343 + | 8-amino-7-oxononanoate synthase TERM 55 81377 - 81416 + G 74 -12.9 -3.61517 | gap 2, opp_overlap 81377, overlap 81377 CGGGCATCGGCAAGA C-CGTGTTCAGCGC-CGGG CTGG CCCGCGCGCTGGGCGCGAG TTATTGGAAGCCGGT bioD 81340 - 81948 + | dithiobiotin synthetase TERM 56 83136 - 83162 + G 77 -11.6 -3.85698 | gap 1, overlap 83126 TGGCTGCGGCCGTTC GGGCGGC-TGC TTTACT GCATGCCGCCC TTTGTCGCCGCGCCG Pden_2919 81948 - 83231 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Pden_2920 83228 - 83836 + | hypothetical protein Pden_2921 83833 - 84576 + | methyltransferase type 11 Pden_2922 85238 - 84573 - | GntR family transcriptional regulator Pden_2923 85866 - 85282 - | 2',5' RNA ligase TERM 57 85473 - 85529 + g 78 -12.2 -3.72576 | GGCGGGCGATGGCCA GCCCCGCACCGGCAAG-GCGCTGCCAGA GCG TCTGGCACAGCGCGT-CGGGGGCGGGGC TTTCCTGCCGGCCGA Pden_2924 86572 - 85916 - | hypothetical protein Pden_2925 87984 - 86569 - | iron-sulfur cluster binding protein TERM 58 87468 - 87496 + g 74 -15.3 -3.03124 | CGGCGGGGGGCGGGT GGTGGCCGGTCTT GAA AAGCTCGGCCACC TGTTCGCGGGTGCGG Pden_2926 88751 - 87981 - | hypothetical protein TERM 59 88375 - 88411 + g 79 -11 -4.08216 | gap 1 CCCGAGGGCGCGTAG CCCATGACATCGGCCAG GAAG CTGG-TGATCTCATGGG TTTTCGCGGCCATGG Pden_2927 90527 - 88761 - | L-lactate transport Pden_2928 92314 - 90605 - | D-lactate dehydrogenase TERM 60 90784 - 90803 + g 83 -9.2 -4.57569 | overlap 90785 ACATCTCATGCTCGA CGGCCAGG CAGT CCTGGCCC TTTTTCACCACGTAG TERM 61 90785 - 90802 + g 70 -12.7 -3.3422 | overlap 90784 CATCTCATGCTCGAC GGCCAGG CAGT CCTGGCC CTTTTTCACCACGTA Pden_2929 92529 - 93302 + | GntR domain-containing protein Pden_2930 93367 - 93633 + | hypothetical protein TERM 62 93788 - 93799 + G 75 -5.8 -4.48987 | TCGAGCCCGTCCACA GCAC GCCG GTGC TTTTGCTTATCGCCG Pden_2931 93763 - 95139 + | gluconate transporter Pden_2932 95148 - 95651 + | carbohydrate kinase Pden_2933 97648 - 95810 - | dihydroxy-acid dehydratase TERM 63 96246 - 96276 + g 78 -12.6 -3.74747 | GCCTCGACCTTGCCG GTCAGGATGCCG GAGACGG CGGCGTCCTGGC TTTCATAGACCTTGG Pden_2934 98402 - 97755 - | CDP-alcohol phosphatidyltransferase TERM 64 98147 - 98109 - G 70 -12.3 -3.28924 | gap 1, overlap 98085 CACCTCGTTCCAGAA GGCGCCGTCG-GGGCTGC CCAT GCCGCCCTCGACCGCGAC GAGCCCGTCGAAGAG Pden_2935 99337 - 98399 - | phosphatidate cytidylyltransferase Pden_2936 99973 - 99341 - | phospholipid/glycerol acyltransferase TERM 65 100036 - 100048 + r 100 -10.5 -5.1101 | opp_overlap 100034 100018 CAACCGGACGGAAGG GCGCG GCG CGCGC TTTTTTCCGTCCTGC Pden_2937 102399 - 100393 - | ABC transporter related TERM 66 101603 - 101550 - G 74 -12.4 -3.64703 | gap 2 GGGCGCGCATGGAAA GCAGCGCCATGCGCAGCGCCTCGGCC AGCC GGCCCAG-CACCG-GCACGGCGGCGC GGGCCTGAACGCGGG Pden_2938 103726 - 102392 - | RND family efflux transporter MFP subunit TERM 67 104260 - 104208 - g 70 -14.7 -2.78384 | gap 1, opp_overlap 104252 TTGGGCGCTATGAGA TCGCCGAGGCGCTGACGCC-CGCC GCGGAA GGCGCGGCACCGGCGCCACGGCAG GGCGACCTGATCGCG Pden_2939 104045 - 104569 + | hypothetical protein Pden_2940 104685 - 105251 + | TetR family transcriptional regulator TERM 68 105678 - 105652 - g 76 -7.8 -4.30576 | overlap 105653 105654 CGCCGACCAGGAAAA GCGTGCCCGCGC CCT GCGCGAGCGCAA GGTGACGGCGGGGGT Pden_2941 105290 - 106483 + | RND family efflux transporter MFP subunit TERM 69 107796 - 107786 - g 75 -8.2 -4.1899 | CGAGGCGACGGAAAA GGCC ATG GGCC AGATCTCGGGCGCCA Pden_2942 106488 - 109613 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 70 110680 - 110728 + G 70 -12.3 -3.28712 | opp_overlap 110692 110695, overlap 110682 GAATATCGGCGGCGG TGGCAGCAGCAAGAGCTGGGGCT TCG GGCCGCAGATCTCGCTGCCGCTG TTCTCGGGCGGGGCG TERM 71 110682 - 110726 + G 77 -14.9 -3.21276 | opp_overlap 110692 110695, overlap 110680 ATATCGGCGGCGGTG GCAGCAGCAAGAGCTGGGGCT TCG GGCCGCAGATCTCGCTGCCGC TGTTCTCGGGCGGGG Pden_2943 109715 - 111163 + | RND efflux system outer membrane lipoprotein Pden_2944 111383 - 113182 + | thiamine biosynthesis protein ThiC Pden_2945 113993 - 113238 - | exopolysaccharide synthesis, ExoD TERM 72 114118 - 114084 - R 71 -9.2 -3.81146 | gap 1, opp_overlap 114086, overlap 114085 TTGGGGAACGAAGAA GCCGGGCCGGCCGCC GGTCAG GACGGC-AGCGCGGC CAGTTCGTGCGCCCA Pden_2946 115021 - 114101 - | ribokinase-like domain-containing protein Pden_2947 116349 - 115042 - | hypothetical protein TERM 73 116272 - 116326 + g 74 -15.1 -3.01712 | gap 1 GGGGCAGACGAGGCT TTGCTGGCCGGGCGAGAATTCCAGGC TCGC GCC-GCAATTCTCGCACGGATAGCGA TATTCCGAGGGCGGC Pden_2948 117489 - 116359 - | antifreeze protein, type I Pden_2949 118170 - 117505 - | hypothetical protein Pden_2950 119208 - 118177 - | hypothetical protein Pden_2951 120398 - 119205 - | toxic anion resistance family protein TERM 74 119924 - 119970 + g 80 -15.8 -3.20227 | overlap 119922 TGAGAAGCCGGTGCT GGTGCTGGTCCAGATCCATGGC GAT GCGGTCGATCTGGCCCTGCACC TCTTCGTAATTGGCC TERM 75 120555 - 120529 - R 100 -17.3 -5.40474 | opp_overlap 120545 120547 AGCGCGCCAAAAAAA TGGCGGCCCCG GCAAG CGGGACCGCCA CGCATCGTCCGCGGG Pden_2952 121031 - 120579 - | hypothetical protein Pden_2953 122165 - 121116 - | helix-turn-helix domain-containing protein Pden_2954 123535 - 122201 - | hypothetical protein TERM 76 122789 - 122813 + g 72 -8.4 -4.09685 | GCTGTCCTCGATCTC GCGCAGCGCC AGGTA GGCGGCGCGC TTTTCGCGCATGGAA TERM 77 123607 - 123566 - R 81 -12.9 -3.64703 | gap 1, opp_overlap 123571 123572, overlap 123567 TTTGCGCGAGGGAAA CGCGAA-GCCCGCGGCCGGG TTC CCCCGCCGCGGGCGTTTTCA GATGCCGGCCCGGCC TERM 78 123606 - 123567 - R 73 -14.2 -2.78679 | gap 1, opp_overlap 123571 123572, overlap 123566 TTGCGCGAGGGAAAC GCGAA-GCCCGCGGCCGGG TTC CCCCGCCGCGGGCGTTTTC AGATGCCGGCCCGGC TERM 79 123571 - 123601 + r 100 -19.6 -4.13767 | opp_overlap 123567 123566, overlap 123572 GCGAGGGAAACGCGA AGCCCGCGGCCGGG TTC CCCCGCCGCGGGCG TTTTCAGATGCCGGC TERM 80 123572 - 123600 + r 100 -23.1 -3.08046 | opp_overlap 123567 123566, overlap 123571 CGAGGGAAACGCGAA GCCCGCGGCCGGG TTC CCCCGCCGCGGGC GTTTTCAGATGCCGG Pden_2955 124850 - 123627 - | saccharopine dehydrogenase Pden_2956 126003 - 124897 - | carboxynorspermidine decarboxylase Pden_2957 127152 - 126127 - | oxidoreductase domain-containing protein Pden_2958 127614 - 127156 - | BadM/Rrf2 family transcriptional regulator TERM 81 127501 - 127482 - G 72 -5.7 -4.26076 | gap 1 GCAGCCGCACGAAAA GCTGCTCC AGATA GG-GCAGC GAGATGTCCTGCCGC Pden_2959 127780 - 128439 + | hypothetical protein TERM 82 128466 - 128444 - f 86 -14.1 -3.73402 | overlap 128432 128430 128445 ACACCCGCTAGGAAA CGGGGCCGG TGCCG CCGGCCCCA GGCATTCGACATGAC TERM 83 128465 - 128445 - f 80 -15.4 -2.8372 | overlap 128432 128430 128444 CACCCGCTAGGAAAC GGGGCCGG TGCCG CCGGCCCC AGGCATTCGACATGA Pden_2960 128477 - 129601 + | metal dependent phosphohydrolase Pden_2961 129721 - 130935 + | isocitrate dehydrogenase TERM 84 130957 - 130978 + F 100 -18.7 -4.27316 | GGACAGGGTTGCGAA GGGCCGGGG GAAA CCCCGGCCC TTTTCGCTTGCGGCG TERM 85 131488 - 131506 + G 86 -6.7 -4.82901 | GCCGGGCGCGCTGAT GCGCAAT GCCGG GTTGCGC TTTTTGTGCCGCGAG Pden_2962 131180 - 131848 + | phosphoribosylformylglycinamidine synthase I TERM 86 132081 - 132101 + G 81 -12.5 -3.85698 | opp_overlap 132072 AGACGACGCGGGTGC GCACCGAGC TGC GCTCGGCGC TTTATACCGGAAACC TERM 87 133573 - 133532 - g 76 -7.1 -4.2704 | gap 1, opp_overlap 133552 133553 TTCACCACGAAGAAA CCCGGA-GAGGGGACCGGCC TGG GGCTGGCGATCTCATCCGGG ATCGCGGCCGATTTC Pden_2963 131915 - 133708 + | integral membrane sensor signal transduction histidine kinase Pden_2964 133728 - 135053 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 88 138002 - 137945 - g 74 -16.1 -2.71712 | gap 1, overlap 137944 GCCGGCCGGCGAAAC CGCCGGATCCGAGGCCGTTGCG-CCCCA GTC CGAGGCCGACACGGCCGCGGAGCCCGCG CCTGCGCCGGAGCCC Pden_2965 135504 - 138113 + | ribonuclease TERM 89 138143 - 138165 + F 95 -18.4 -3.90112 | opp_overlap 138138 138136 CCACGAAAGAGTGAC GGGCGCGGGG CTT TCCCGCGCCC TTTCCTTGCGCCAAG TERM 90 138354 - 138375 + G 78 -13 -3.75024 | overlap 138348 GAAATCGGGCGAGCG CAGCGCCG TGGTTC CGGCGCTG TTCTTCGTCATGGGC Pden_2966 138190 - 138933 + | cytochrome c biogenesis protein, transmembrane region Pden_2967 139730 - 138930 - | enoyl-CoA hydratase/isomerase TERM 91 139482 - 139458 - G 70 -12.1 -3.31144 | opp_overlap 139475 GGCGCAGCGCGAGAA CAGCCGCGC ATAGGCG GCGCGGCCG TCGTCCTCGTCATTG Pden_2968 139815 - 140237 + | hypothetical protein rplM 140388 - 140852 + | 50S ribosomal protein L13 rpsI 140856 - 141335 + | 30S ribosomal protein S9 TERM 92 141364 - 141383 + F 100 -16.4 -4.36595 | TTCGCATCTATCCGG CGCGGCCC CTCG GGGCCGCG TTTTGCATTTCGGTA Pden_2971 141439 - 141723 + | hypothetical protein TERM 93 141707 - 141740 + T 71 -4.5 -4.56436 | overlap 141713 141715 TCTGGGAAGCAATGG CTTGGACTTCGCCAT AAGA GTGGCGATGTTTGGG TTGTTTTCTTTCCTC TERM 94 142930 - 142943 + T 79 -6.7 -4.46212 | GACATCGCAGGACCG CTCCA GAGA TGGAG TTTTCTCGTAAGAGA TERM 95 143882 - 143895 + T 72 -6.7 -4.23892 | TCCTGTCGGACGCAT TGCTC TTCG GAGCA TTTTACATCGTTCAG TERM 96 144037 - 144017 - T 78 -12.7 -3.44186 | opp_overlap 144014 144032, overlap 144032 AAGTACACTAACCAA TGTTCCTTC GAC GAAGGAACA AAGTCCCTTCCTCGG TERM 97 144059 - 144040 - T 78 -7.8 -4.34737 | opp_overlap 144032, overlap 144032 144042 CGACGAAGGAACAAA GTCCCTTC CTCG GAAGGGGC GGGAAACGTACATGC TERM 98 144328 - 144293 - T 74 -11.2 -3.62864 | opp_overlap 144262 144284 144286, overlap 144294 144324 GAAACCCACCTGAAA TCCAGTTGTTGTTACC CTCG GGTATCAACAACCGGG TTAACCAGGTACTTA TERM 99 144327 - 144294 - T 75 -14.7 -2.77236 | opp_overlap 144262 144284 144286, overlap 144293 144324 AAACCCACCTGAAAT CCAGTTGTTGTTACC CTCG GGTATCAACAACCGG GTTAACCAGGTACTT TERM 100 145909 - 145896 - T 78 -4.5 -4.7254 | overlap 145901 ACTGTTTACTAAAAA CACAG GGCT CTGCG AAGCCGTAAGGCGAC TERM 101 147273 - 147256 - T 100 -9.1 -4.93296 | CGACGATGACAAAAA GCGCTGA CAAT CCAGCGC AAACGGCCGCGGGGT TERM 102 147384 - 147399 + T 78 -10.4 -3.97368 | opp_overlap 147377 ATTACAACCGCTTAA GCCTCC TCCG GGAGGC TTTCTGCATTCGCGC Pden_2972 148221 - 147370 - | hypothetical protein Pden_2974 150403 - 148499 - | helicase domain-containing protein TERM 103 149525 - 149513 - G 72 -4.7 -4.43477 | overlap 149515 GCCAGGCAAGGAAAA CGGGG CCT CGCCG GCTCGCCCGCGTTCA Pden_2975 150711 - 150397 - | hypothetical protein Pden_2976 151268 - 150708 - | transposase, IS4 family protein Pden_2977 153085 - 151529 - | TonB-dependent receptor, plug TERM 104 152533 - 152493 - G 70 -8.8 -3.85698 | opp_overlap 152516, overlap 152494 GCCCCGCCGTAGAAA TCGGTCGAGACGCCGGGC GTATA GCGCAGCGCCTCGTCCAC GCTGGCCGCGCCCTG TERM 105 152891 - 152834 - G 87 -20.5 -3.01712 | gap 1, opp_overlap 152834 CTCTGCCGGCGAATA GCTGCCCCGCTGCGGCGGCGCCGACCGG CCG CGGGTCAGCGCCGCCGGAT-AGGCCAGC TTGATGCAGGTGCTG TERM 106 152834 - 152891 + g 86 -18.3 -3.15861 | gap 1, opp_overlap 152834 CTCTGCCGGCGAATA GCTGCCCCGCTGCGGCGGCGCCGACCGG CCG CGGGTCAGCGCCGCCGGA-TAGGCCAGC TTGATGCAGGTGCTG Pden_2978 154198 - 153212 - | putative FecR TERM 107 153974 - 153928 - G 74 -16.5 -2.71681 | gap 2, opp_overlap 153972 CAAGCCCGGCAAGGA CGGCGAGCG-CGTCG-CGCCGCG AAG CGCGGCGGCGGCGCCCCTTGCCG GGCTGGATCAGCCCG TERM 108 153972 - 153990 + g 85 -16 -3.57144 | opp_overlap 153928 CGGCGGCGCCCCTTG CCGGGCTG GAT CAGCCCGG TTTCGGGATCGCGGC Pden_2979 154779 - 154267 - | ECF subfamily RNA polymerase sigma-24 factor Pden_2980 155557 - 156567 + | periplasmic binding protein Pden_2981 156564 - 157625 + | transport system permease protein Pden_2982 157622 - 158386 + | ABC transporter related Pden_2983 158387 - 158818 + | pseudoazurin Pden_2984 158815 - 159498 + | methyltransferase type 11 Pden_2985 159954 - 159505 - | DNA-binding protein Pden_2986 159971 - 160462 + | PEP phosphonomutase and related enzymes-like TERM 109 160503 - 160463 - T 71 -12.4 -3.28712 | opp_overlap 160486 160498, overlap 160464 GTCCTGCCCGCATAA GGCCAGGGATCGGGCGGG GGGGT CCCGCCCGACGACCGGCG GGGCGCAACCGCCCA TERM 110 160502 - 160464 - T 77 -15.9 -2.57132 | opp_overlap 160486 160498, overlap 160463 TCCTGCCCGCATAAG GCCAGGGATCGGGCGGG GGGGT CCCGCCCGACGACCGGC GGGGCGCAACCGCCC TERM 111 160498 - 160530 + T 72 -12.7 -3.14211 | opp_overlap 160464 160463, overlap 160486 GGTCCCGCCCGACGA CCGGCGGGGCG CAACCGCCCAC CGCTCCGCCGG TTCATGCGCGAGGGT Pden_2987 161202 - 160576 - | anaerobic ribonucleoside-triphosphate reductase activating protein Pden_2988 161377 - 161195 - | hypothetical protein TERM 112 161399 - 161413 + r 88 -8.5 -4.59773 | TTCCTTCCTCAATGC GCGGC CGATT GCCGC TTTTTCGCGATAAGC Pden_2989 163137 - 161392 - | anaerobic ribonucleoside triphosphate reductase Pden_2990 164611 - 163940 - | two component LuxR family transcriptional regulator TERM 113 164372 - 164393 + g 77 -10.9 -3.9122 | gap 1 GCGCCGCAAGCGCTC GATCAGCCGG ATT CCGGC-GATC TTGTTTCGGCCGATG Pden_2991 166023 - 164596 - | integral membrane sensor signal transduction histidine kinase TERM 114 165478 - 165451 - G 72 -9 -3.96148 | CGTCGTCATCAGAAA GGCCAGCCCCAC CATG GCGAGCCCGGCC AGGAACAGCACCGGC Pden_2992 166484 - 166020 - | hypothetical protein TERM 115 166679 - 166661 - H 75 -4.5 -4.59773 | overlap 166662 166663 166672 TCGGACGGGGAAAAA CCCCCGA GAAAG TCGGGAA GCCCACCCCGCAGAC Pden_2993 166833 - 168731 + | Pyrrolo-quinoline quinone Pden_2994 168805 - 169635 + | extracellular solute-binding protein Pden_2995 169646 - 170179 + | cytochrome c, class I Pden_2996 170234 - 170545 + | methanol dehydrogenase, beta subunit TERM 116 170558 - 170588 + F 84 -17.6 -2.73875 | opp_overlap 170546 170580, overlap 170555 TAAGCGGGCCGGGGG CGCTGCGCGTGCTT CCA GACCACGCGCAGCG TGATATTCGGGACGG Pden_2997 170607 - 171626 + | ATPase Pden_2998 171623 - 172477 + | hypothetical protein TERM 117 173152 - 173169 + G 83 -8.3 -4.57569 | overlap 173142 173141 173151 CAATTCGCGCCGCTG GCCGAGC GGCT GCGCGGC TTTTTCGCAGCCTCC Pden_2999 172474 - 173277 + | MxaA protein, putative Pden_3000 173274 - 174281 + | von Willebrand factor, type A TERM 118 174439 - 174461 + G 81 -10.4 -4.26076 | CGAGGCGGCCGATCC GCGCGCCGCC CAT GCCCGCGCGC TTTTCCTGGCGCTGC Pden_3001 174278 - 174829 + | hypothetical protein TERM 119 175640 - 175678 + G 79 -10.9 -4.08216 | gap 1 TGGCCGCCCACGCCC CCGCGCGTCGGGTCGCGA CACA TCGCAGCCTGTCGC-CGG TTTTCGGCGCGCTGG Pden_3002 174955 - 175758 + | von Willebrand factor, type A Pden_3003 175755 - 176288 + | MxaD protein, putative Pden_3004 177154 - 176306 - | peptidase S15 TERM 120 176792 - 176774 - G 72 -5.2 -4.4078 | opp_overlap 176782 176785 TGCGCCGAAGGAAAA GCCCATCA GGC CGATGCGC TCGGCATCGATCTTG Pden_3005 177655 - 177218 - | hypothetical protein Pden_3006 178218 - 177706 - | hypothetical protein TERM 121 178424 - 178451 + r 87 -14.8 -3.64822 | GCTTGGGGGCAGGGA GGATGCCCCGGT CGCT GCCGGGGCACCC TTTGGATCAGAACGT Pden_3007 180536 - 178458 - | TonB-dependent siderophore receptor TERM 122 182000 - 181974 - g 74 -14.5 -3.04263 | gap 1 AGCGTATCGTGAACA CCCAGGGCCGAC CCAT GTCG-CCCTGGG ACGAGCTGCGCATCA TERM 123 182512 - 182488 - g 74 -10.8 -3.68222 | gap 1, opp_overlap 182508, overlap 182489 182507 CGGCAAGGTCAACAA GCGCCAGTTGC GCGA GCAACTG-CGC GAGGCGCATTTCCCC Pden_3008 180896 - 182563 + | AMP-dependent synthetase and ligase Pden_3010 183927 - 182950 - | periplasmic binding protein Pden_3009 182560 - 183015 + | chorismate mutase related enzymes TERM 124 183127 - 183099 - GT 72 -11.5 -3.53811 | overlap 183048 183051 CCCAGCCGGGCGAAA GGCGGTCCAGCGC CGC GCGCGCGGCCGCC TCGTCCCGCGCCGGG Pden_3011 184975 - 183941 - | transport system permease protein Pden_3012 185970 - 184972 - | transport system permease protein Pden_3013 186746 - 185967 - | ABC transporter related TERM 125 187454 - 187498 + Gr 93 -17.8 -3.57119 | gap 2, opp_overlap 187429 GACCTGCAGCGCCGG GCCCGCGCCGCCGGCCGCGACG ACG CGCCGCGGCTG-CTGC-CGGGC TTTCACGCCTATCTG Pden_3015 193665 - 187954 - | amino acid adenylation domain-containing protein Pden_3014 186830 - 188014 + | NtaA/SnaA/SoxA family monooxygenase TERM 126 188607 - 188586 - Gf 71 -7.9 -4.07687 | gap 1, overlap 188587 AGGCCGTCGCGAAAA GCGAGGCCGC GTT GCG-CCGCGC CGTGGCGTAAAGCCC TERM 127 191334 - 191368 + gF 76 -14.2 -3.14132 | CCACCAGCCGCAGCC CGGCATCGGCGGGCAC CCG GTCCCAGCCCATGCCG TTGGTCAGCACCACC TERM 128 192766 - 192812 + gF 72 -13 -3.14602 | overlap 192764 TGCCTCGCGCGCCAG TCCGGCCAGCGTGGCCT-CGGG CCCGA CCCGCAGGCCGAGC-GGCAGGA TATTGGTGAAATCCC Pden_3016 193771 - 194019 + | phosphopantetheine-binding Pden_3017 194271 - 196073 + | ABC transporter related Pden_3018 196070 - 197857 + | ABC transporter related Pden_3019 198676 - 198236 - | signal-transduction protein Pden_3020 199072 - 198689 - | succinate dehydrogenase, cytochrome b subunit Pden_3021 199446 - 199069 - | succinate dehydrogenase, cytochrome b subunit Pden_3022 199830 - 199462 - | succinate dehydrogenase (ubiquinone) TERM 129 199927 - 199901 - R 86 -13.6 -3.72576 | GCGCGGGCCAGGAAA GCGCCGCGGCCG CTT CAGGCGCGGCAC CTCGTGCGGGCGAGC Pden_3023 200400 - 199948 - | hypothetical protein Pden_3024 200859 - 200422 - | BadM/Rrf2 family transcriptional regulator TERM 130 200549 - 200529 - G 73 -12.5 -3.53012 | overlap 200509 200530 CGCGCGCGGCGGAAA GCTGCGGCC GCA GGCGGCAGC GCGGCCTCAGGACGC TERM 131 201556 - 201579 + G 84 -16 -3.53012 | opp_overlap 201544 ATACCGTGCCCGAGG GCGCCTGCCG GACC TGGCAGGCGC TTTACGCCGGGACCG Pden_3025 201003 - 201674 + | hypothetical protein Pden_3026 201788 - 202111 + | hypothetical protein Pden_3027 202131 - 202469 + | alkylhydroperoxidase TERM 132 203603 - 203621 + G 70 -8.8 -3.93236 | TCTGCCGATGGTTCT GGCCATGG CCG CCATCGCC TTTCTCGGCTTCATC Pden_3028 202683 - 204353 + | cytochrome-c oxidase TERM 133 206867 - 206881 + G 70 -8.5 -3.91897 | GATGGCGCGACGCGG GGCGC GAACA GCGCC TTTCTGGGTGCGCCC Pden_3029 204776 - 206932 + | TonB-dependent siderophore receptor Pden_3030 206944 - 207768 + | methyltransferase type 12 Pden_3031 207773 - 208786 + | transport system permease protein TERM 134 209494 - 209533 + G 79 -7 -4.52873 | gap 1, overlap 209496 GTCATCCACGCGGTC TATGGGGTCCG-GGTCGCC CGG GTCGGTCACGGTCCCCACA TTATTTTTGTCCCGG Pden_3032 208783 - 209553 + | ABC transporter related Pden_3033 209564 - 210601 + | periplasmic binding protein Pden_3034 210616 - 210993 + | hypothetical protein Pden_3035 211221 - 211066 - | butyrate-acetoacetate CoA-transferase Pden_3036 211416 - 212906 + | sulphate transporter TERM 135 213102 - 213137 + T 84 -6.8 -4.72272 | opp_overlap 213120, overlap 213097 GTTGCTTTTACGTTC TGTCGTGCCGACAAGG AAGT CGTTGTTGCCACGCCA TTTTTCGTGGCGCAC TERM 136 213286 - 213302 + T 75 -3.5 -4.73108 | overlap 213287 TTTACCGTAGGGGTT GGGCGGC AGG GCCGGCA TTTTGCTTTTCTCGG Pden_3037 214716 - 213391 - | Cl- channel, voltage-gated family protein TERM 137 213799 - 213766 - G 87 -8.2 -4.72272 | gap 1 CTTGGCCAGGAAAAA GCTGGCGG-GCAA TTGCTCACC CTGCACCGCCAGC CGCGCCTCGCCGTAG TERM 138 214844 - 214805 - R 75 -7.6 -4.27117 | opp_overlap 214839, overlap 214811 214812 GGTGGAGAAGACAAA TGCAAACCGGGCCGGACA TGAC CGCCCGGCCCGCCCAGCC TCAGGTCAGTTCCCG TERM 139 214838 - 214811 - R 81 -12.6 -3.93009 | overlap 214805 214812 GAAGACAAATGCAAA CCGGGCCGGACA TGAC CGCCCGGCCCGC CCAGCCTCAGGTCAG TERM 140 214837 - 214812 - R 81 -16.1 -2.94721 | overlap 214811 214805 AAGACAAATGCAAAC CGGGCCGGACA TGAC CGCCCGGCCCG CCCAGCCTCAGGTCA Pden_3038 216509 - 214845 - | choline/carnitine/betaine transporter TERM 141 215511 - 215487 - G 71 -2.6 -4.59109 | overlap 215488 CAGATTGCCGAAAAA GCCGGTCAGG ATCTG CCAGGTCGGC CCGGTCAGGATCACG Pden_3040 218413 - 218003 - | ISSpo9, transposase Pden_3039 216885 - 218168 + | hypothetical protein Pden_3041 218688 - 218479 - | hypothetical protein TERM 142 220538 - 220591 + r 76 -9.3 -4.07885 | overlap 220539 TTTGGCGCGCGGGTG AGCAGGCCCGTGGCGGCGTAGCT TTCCAGCT GGCGCAGCCGACGCGGGCCTGCG TTTTGGAGGGCGGTC TERM 143 220539 - 220590 + r 72 -12.8 -3.04517 | overlap 220538 TTGGCGCGCGGGTGA GCAGGCCCGTGGCGGCGTAGCT TTCCAGCT GGCGCAGCCGACGCGGGCCTGC GTTTTGGAGGGCGGT TERM 144 220985 - 220944 - R 74 -10 -3.74542 | CACAACATTGAAGAA GCGGCCGCGAGCGCCG TTGCGGATGG CAGCGCGCGCGATCGC CACGGAGATATGGGT Pden_3044 222683 - 221466 - | major facilitator transporter Pden_3045 223940 - 222708 - | major facilitator transporter Pden_3046 224252 - 225097 + | alcohol dehydrogenase Pden_3047 225607 - 225122 - | MarR family transcriptional regulator TERM 145 225580 - 225592 + g 72 -4.1 -4.5442 | ACATCTTCCTGATAT GTGTA TGA TGCAC TTTTATCGTTGACAC Pden_3048 225654 - 227174 + | hypothetical protein TERM 146 227391 - 227406 + F 95 -10.4 -4.81249 | ATATCAGCGTGTTAA GCCTCC CTCG GGAGGC TTTTTGCATTTGGGC TERM 147 228170 - 228155 - g 70 -8.2 -3.85698 | overlap 228156 GCTGGGCGTTAGAAA CGGGCG TTCC CGCCCA AGAATTTTTTGCTGA TERM 148 228245 - 228257 + G 72 -4.7 -4.42386 | CTGCCCTGGTCACCG CGCCG AAT CAGCG TTTTATCGGTGAAAA TERM 149 228741 - 228711 - g 82 -18.2 -3.04263 | overlap 228713 ATCCGACCGTGAAGA CAGCCGCGCCCGCG ATC CGCTGGCGCTGCTG GAGGCCCGGCTCTGC TERM 150 228739 - 228713 - g 74 -15 -3.07895 | overlap 228711 CCGACCGTGAAGACA GCCGCGCCCGCG ATC CGCTGGCGCTGC TGGAGGCCCGGCTCT Pden_3049 228088 - 229941 + | transketolase, central region Pden_3050 229941 - 230696 + | regulatory proteins, IclR Pden_3051 230709 - 231107 + | endoribonuclease L-PSP TERM 151 231313 - 231335 + G 87 -17.8 -3.27298 | opp_overlap 231295 GCGTCTGGCCCGCGC GGCGGCTGAT CAG ATCAGCCGCC TTGGTACTTACCACA Pden_3052 231104 - 232495 + | aminotransferase class-III TERM 152 232614 - 232628 + G 75 -5.6 -4.65895 | GAGCCCGTGCTCAAT GCGGTG ACG CAGCGC TTTTTCGATCAGGCG Pden_3053 232485 - 233912 + | amidase Pden_3054 233971 - 235251 + | branched-chain amino acid ABC transporter Pden_3055 235254 - 236066 + | ABC transporter related Pden_3056 236056 - 236769 + | ABC transporter related Pden_3057 236773 - 237651 + | inner-membrane translocator Pden_3058 237648 - 238664 + | inner-membrane translocator TERM 153 239629 - 239639 + G 77 -4 -4.74801 | CCGATCAGACATCTC TATC ATG GATA TTTTTCGTCAGATTG Pden_3059 238652 - 240073 + | amidase Pden_3060 240727 - 240368 - | hypothetical protein Pden_3061 240832 - 242865 + | outer membrane autotransporter TERM 154 242955 - 242979 + G 75 -4.8 -4.56597 | overlap 242943 242971 CCTCTGGCCGCTTTG CTGGCCGGTC TGTCC GCCCTGCCGG TTTTTGCGACGGAAA Pden_3062 242895 - 243410 + | hypothetical protein TERM 155 243398 - 243386 - T 72 -6.9 -4.21194 | overlap 243394 CCTGATCACGGAAAA CCCGG AAA CCGAG GTCAAGCCATGACTC Pden_3063 243720 - 243469 - | hypothetical protein TERM 156 244539 - 244522 - g 84 -4.9 -4.99035 | gap 1, opp_overlap 244506, overlap 244523 244524 CCAGTCAGACAAAAA CTGGCTAT GTC ATAGCC-G CCAATGCGAATATGG Pden_3064 243789 - 245771 + | hypothetical protein TERM 157 246129 - 246095 - T 73 -9.5 -3.94184 | gap 2, opp_overlap 246089 246097 246104, overlap 246104 ACACGTAAGATCAAA GACTTCAAAGCCGAGCA TAA CGCTCGGCTTT--AGTC GTTTGGATTTCTTGT TERM 158 246104 - 246122 + T 79 -11.7 -3.89412 | opp_overlap 246095 246104, overlap 246097 246089 ATCAAAGACTTCAAA GCCGAGC ATAAC GCTCGGC TTTAGTCGTTTGGAT TERM 159 246122 - 246104 - T 80 -12.4 -3.69902 | opp_overlap 246104 246097 246089, overlap 246095 ATCAAAGACTTCAAA GCCGAGCA TAA CGCTCGGC TTTAGTCGTTTGGAT Pden_3065 246522 - 246211 - | plasmid stabilization system protein TERM 160 246415 - 246381 - G 70 -8.5 -3.90744 | TGGGGCGTGAAACAA CGCCATGGCGTTCGA TCTGG TCGAACGCCGCGAAG AGGTCGGTGATGTAC Pden_3066 246793 - 246527 - | hypothetical protein TERM 161 246847 - 246879 + H 78 -10.6 -4.0162 | opp_overlap 246853, overlap 246848 CAAGGCACGCCATGT AGCCAATCTCCGCA TCACC TGCGGAGATTGACA TTTCTAATCTCCGCA TERM 162 246848 - 246878 + H 75 -14.1 -3.00651 | opp_overlap 246853, overlap 246847 AAGGCACGCCATGTA GCCAATCTCCGCA TCACC TGCGGAGATTGAC ATTTCTAATCTCCGC TERM 163 246936 - 246920 - H 75 -7.9 -4.26903 | GCTACGCTATCAAAA TCGCCGC GCT GCGGCTA TCAACCGATTGAAGC Pden_3067 247092 - 247268 + | hypothetical protein Pden_3068 247372 - 248271 + | hypothetical protein TERM 164 248658 - 248702 + GT 78 -12.8 -3.53224 | gap 1, opp_overlap 248656 GCAGTCCGACAAGGC GCCGGCTGGG-CGGTGCTG CCCGACTT CATCGCCGTCCCTGCCGGC TTTGCGCCGGGAATG Pden_3070 249432 - 248809 - | hypothetical protein Pden_3069 248442 - 248864 + | LysR family transcriptional regulator acnA 252093 - 249529 - | aconitate hydratase Pden_3072 253021 - 252149 - | GntR family transcriptional regulator TERM 165 253097 - 253076 - R 89 -18.7 -3.08996 | opp_overlap 253076 TACCGTCATGCAAGA GGCGCGGCC CTGC GGCCGCGCC TTGTCTGCGATCAAT TERM 166 253076 - 253097 + r 93 -18.7 -3.50572 | opp_overlap 253076 TACCGTCATGCAAGA GGCGCGGCC CTGC GGCCGCGCC TTGTCTGCGATCAAT Pden_3073 254607 - 253108 - | hypothetical protein TERM 167 253613 - 253566 - G 76 -7.7 -4.2558 | gap 1, overlap 253567 253569 GATGCTGCACGAAAA GCA-GCGGGCCGGGTTGCAG GTTGTATTG CTGGAACCCGGCCAGCATGA CTGCCGCCGTGGCCG TERM 168 253609 - 253569 - G 72 -14 -3.13504 | overlap 253567 253566 GCTGCACGAAAAGCA GCGGGCCGGGTTGCAG GTTGTATTG CTGGAACCCGGCCAGC ATGACTGCCGCCGTG TERM 169 253894 - 253912 + g 72 -5.9 -4.3534 | CGACATCCAGATCGA GCCCTTG ATCGC CATGGGC TTTTCGTCGTTGAAC Pden_3074 255088 - 254618 - | putative tricarboxylic transport membrane protein Pden_3075 256111 - 255140 - | hypothetical protein TERM 170 256186 - 256175 - H 71 -4.4 -4.52047 | GATGAGATTATAAAA TGCA ATAA TGCA AATCGGGAGCGGTAA Pden_3076 256282 - 256695 + | hypothetical protein Pden_3077 256692 - 259682 + | gene transfer agent (GTA) like protein Pden_3078 259693 - 260769 + | hypothetical protein TERM 171 260963 - 260946 - f 78 -12.7 -3.53012 | opp_overlap 260931 TGTCCCGCGTCGAAA CGGGCAC AATT GTGCCCG GCTGCCTATGCCGGG TERM 172 261048 - 261030 - f 70 -6 -4.30177 | opp_overlap 261018 GAGGAGAGCAAGAAA GCCGAT ATCATTG ATCGGC CCCTGTGCTCTCTGA Pden_3079 261211 - 261627 + | transposase IS200-family protein TERM 173 261608 - 261627 + T 71 -13.6 -2.77503 | opp_overlap 261599, overlap 261602 261599 ATCACATCGCTGATC CTACCGGC GCCA GCCGGTAG TCGTTCAGTGCTTCT Pden_3080 262105 - 261632 - | hypothetical protein Pden_3081 263058 - 262396 - | hypothetical protein Pden_3082 267024 - 263530 - | outer membrane autotransporter TERM 174 267829 - 267802 - g 78 -6.8 -4.65895 | opp_overlap 267803 267817 GTGCCCATGGAAAAA GCGGCGGTGCAG TTTT CGGCATCGGCGC CGATTATGCCGTATC Pden_3083 267354 - 267965 + | putative outer membrane protein Pden_3084 268005 - 268373 + | putative lipoprotein Pden_3085 268564 - 268971 + | hypothetical protein TERM 175 269242 - 269266 + G 75 -5.8 -4.40561 | CGCTGTGAACGCATC CATTCCCA CTGCTGATA TGGGAATG TTCTTTTTCCAAGAG Pden_3086 268991 - 269851 + | hypothetical protein Pden_3087 270066 - 271148 + | extracellular solute-binding protein Pden_3088 271765 - 271163 - | hypothetical protein Pden_3089 272704 - 271811 - | helix-turn-helix domain-containing protein TERM 176 272264 - 272277 + g 71 -2.4 -4.55118 | GATGATTCCATTCCT TAGC AACATG GCTA TTTTGTGTGCAATTG Pden_3090 273519 - 273007 - | hypothetical protein TERM 177 273048 - 273036 - G 77 -3.4 -4.6902 | CGAGAATGGCAAAAA GCAA GCCAA TTGC TGACACCTTTTCCTG Pden_3091 274733 - 273579 - | phage integrase family protein TERM 178 274119 - 274142 + g 79 -4.5 -4.72986 | gap 1 GATGCGACGCAGCTC CGC-CGCGCT GAGGA AGCGCTCGCG TTTTTCCTCCGGATA Pden_3092 274853 - 276391 + | hypothetical protein TERM 179 276551 - 276538 - f 90 -8.1 -4.89521 | ATATGCGAAAGAAAA CGCGA TTCG TCGCG CCTGATCGTGTTTGG TERM 180 276649 - 276666 + F 84 -12.7 -3.71649 | opp_overlap 276641 276638 GATATCAGTGCATTA GGCCTCC TTCG GGAGGCC TTTCGCATTTGAGCC Pden_3093 276953 - 278287 + | PAS/PAC sensor signal transduction histidine kinase Pden_3094 278284 - 279273 + | NADH ubiquinone oxidoreductase, 20 kDa subunit TERM 181 279279 - 279265 - f 80 -8.5 -4.38712 | CCGACGCTGAGAAAA CCCCG ATGAG CGGGG CAGGGGGCGAGATGG TERM 182 279381 - 279402 + G 70 -8.6 -3.87869 | GAGGGGCGGGTCAGC GCGGCGCG GATCAA CTCGCCGC TTTATCGCGGGTTCG Pden_3095 279291 - 280724 + | nickel-dependent hydrogenase, large subunit TERM 183 280803 - 280819 + G 79 -11.5 -4.0371 | GCGGGCAGGTGCAGG GGGTCGG CTT CCGGCCC TTTGTCTGGCGGCTG TERM 184 281762 - 281782 + G 74 -12.5 -3.6003 | opp_overlap 281758, overlap 281751 ACCGGCAATGACGAG GCGCGCAAG GCG CTGGCGCGC TTTGCCGATGGTTTC Pden_3096 280745 - 282994 + | (NiFe) hydrogenase maturation protein HypF Pden_3097 283197 - 284282 + | hydrogenase (NiFe) small subunit HydA TERM 185 285588 - 285572 - g 79 -2.1 -4.82667 | opp_overlap 285575, overlap 285573 TGAGGACATCAAAAA TCAGGTC GAT GGCCTGT TGAGAACCATGGATT Pden_3098 284286 - 286079 + | nickel-dependent hydrogenase, large subunit Pden_3099 286095 - 286679 + | HupE/UreJ protein Pden_3100 286684 - 287430 + | Ni/Fe-hydrogenase, b-type cytochrome subunit TERM 186 287506 - 287535 + F 100 -18 -5.05079 | opp_overlap 287511 TGCCGCACCATATCC CGAAATCCCGCC CGCATT GGCGGGATTTCG TTTTTATATCATTAT TERM 187 287530 - 287511 - f 71 -10.7 -3.59738 | opp_overlap 287506 CACCATATCCCGAAA TCCCGCC CGCATT GGCGGGA TTTCGTTTTTATATC TERM 188 288271 - 288283 + G 75 -4.7 -4.56597 | TGATGCCTGCCGCGA GGGCG ATG CGCGC TTTTTCCCGGGGGCC Pden_3101 287636 - 288304 + | hydrogenase expression/formation protein Pden_3102 288304 - 288615 + | hydrogenase expression/formation protein (HUPF/HYPC) Pden_3103 288619 - 289038 + | hydrogenase-1 expression HyaE Pden_3104 289051 - 289884 + | HupH hydrogenase expression protein Pden_3105 289881 - 290732 + | rubredoxin-type Fe(Cys)4 protein TERM 189 291112 - 291149 + G 74 -13.3 -3.29461 | gap 1, overlap 291128 291129 CGGACCCGGTGATCT GGC-CGCATGGAGCGCGG GCC CCGCGCCGCTTGCGCGCC TTGTCGCGGCGGTTC Pden_3106 290729 - 291631 + | HupK Pden_3107 291624 - 291965 + | hydrogenase nickel insertion protein HypA Pden_3108 291965 - 292885 + | hydrogenase accessory protein HypB TERM 190 294270 - 294258 - g 86 -10.5 -4.63486 | opp_overlap 294258, overlap 294260 ATCGCTGGAACAAAA GCCGC GCG GCGGC CGAGCTGGGTGTGTC Pden_3109 292889 - 294370 + | two component, sigma54 specific, Fis family transcriptional regulator Pden_3110 294373 - 294657 + | hydrogenase assembly chaperone hypC/hupF Pden_3111 294654 - 295790 + | hydrogenase expression/formation protein HypD TERM 191 295874 - 295898 + G 81 -2.2 -5.03145 | gap 2, overlap 295880 CGGTGGCGGCAAGGC GATGG-C-CGAT CTG ATCGAGACCGTC TTTTTTCCCGCCTTC Pden_3112 295803 - 296858 + | hydrogenase expression/formation protein HypE Pden_3114 298544 - 297507 - | hypothetical protein Pden_3113 297085 - 297600 + | hypothetical protein Pden_3115 299911 - 298541 - | hypothetical protein Pden_3116 301594 - 300689 - | helix-turn-helix domain-containing protein TERM 192 301422 - 301404 - G 70 -4.4 -4.4891 | opp_overlap 301406, overlap 301405 301406 GGCAGCAGCACAAAA TCGCCGGC CTC GACGGTGA CCGGCTCTTCGCCCT Pden_3117 301647 - 302417 + | short-chain dehydrogenase/reductase SDR Pden_3118 303199 - 302450 - | methionine aminopeptidase TERM 193 303243 - 303273 + H 75 -14 -3.01924 | opp_overlap 303235 303242, overlap 303245 TAACCGACATCATAG CGGTGATGCGTGGC GAT GTCCCGCATCACTG TCTTGACCGCCGCTC TERM 194 303245 - 303271 + H 72 -13 -3.06696 | opp_overlap 303235 303242, overlap 303243 ACCGACATCATAGCG GTGATGCGTGGC GAT GTCCCGCATCAC TGTCTTGACCGCCGC Pden_3119 303258 - 303755 + | BadM/Rrf2 family transcriptional regulator Pden_3120 303759 - 304643 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_3121 304640 - 305311 + | methyltransferase type 12 Pden_3122 306503 - 305322 - | phage integrase family protein Pden_3123 308351 - 306693 - | recombinase TERM 195 306750 - 306771 + g 100 -12.9 -4.74103 | CATCTTTACTTGCGC CCCCGCTGC ATCC GCCGCGGGG TTTTTGCGTTGCGCC TERM 196 307932 - 307959 + g 79 -14.9 -3.29144 | gap 1, overlap 307940 GGACTTGCCGGCCTC GACCCGGCCGCG CTGGC CGCG-CCGGGTC TTGTCGGCCAGATCC Pden_3124 308598 - 308371 - | hypothetical protein Pden_3125 309381 - 308737 - | hypothetical protein TERM 197 308886 - 308912 + g 73 -12.3 -3.53224 | gap 2 AGACGATCAGGATCC CGGCGCCGACGGC GAG GCCG-CG-CGCCG TTTCCGGCAGGCGTC Pden_3126 310022 - 309663 - | hypothetical protein Pden_3127 310989 - 310237 - | peptidase C24 Pden_3128 312305 - 311064 - | hypothetical protein Pden_3129 313308 - 312313 - | SMF family protein TERM 198 312660 - 312682 + g 72 -4.8 -4.52803 | overlap 312661 CAATTGCACCGCCAC TCTTCGCGAT CGC ATCACGAAGC TTTTCTGAGTTTCTC Pden_3130 313398 - 313784 + | phage integrase Pden_3131 315512 - 314148 - | chromate transporter Pden_3132 316354 - 315509 - | rhodanese domain-containing protein Pden_3133 317276 - 316569 - | NADPH-dependent FMN reductase Pden_3134 318346 - 317273 - | arsenical-resistance protein Pden_3135 318784 - 318359 - | arsenate reductase Pden_3136 319146 - 318787 - | regulatory protein, ArsR Pden_3137 319678 - 319199 - | hypothetical protein TERM 199 319607 - 319562 - G 73 -9.5 -3.9122 | overlap 319565 CACCGGCCCAAAGAA CGACGCTCTGGACCCGAGGGG GAGA CCCGTCAGGCCCAGCAGGGCG AGCCGCCGGCAGTCC TERM 200 319814 - 319833 + r 88 -11.4 -4.21194 | opp_overlap 319801 319800 AGCTGGAAGGTGAAG CGGCGGAT CCAG GTCCGCCG TTTTCGCTCGTCCAG Pden_3138 320844 - 320014 - | hypothetical protein Pden_3139 320864 - 321223 + | hypothetical protein TERM 201 321258 - 321246 - f 74 -4.7 -4.56775 | opp_overlap 321236 AGTTTGCGGTAAAAA CGGCG TTT CTCCG GATTTTCCGTCGATG TERM 202 321437 - 321460 + F 81 -7.4 -4.56597 | gap 1, overlap 321438 TCTTCAGCTTTGCCG GGCCGCTGCAC TGT GTG-AGCGGCA TTTTTGAAAGGAACA TERM 203 321438 - 321459 + F 70 -10.9 -3.33744 | gap 1, overlap 321437 CTTCAGCTTTGCCGG GCCGCTGCAC TGT GTG-AGCGGC ATTTTTGAAAGGAAC Pden_3140 321481 - 321687 + | cold-shock DNA-binding domain-containing protein TERM 204 321712 - 321738 + F 95 -12.9 -4.4078 | opp_overlap 321711 CGAAGGGTAATACAG GCGGGGTCGGC TTCAT GCCGTCTCCGC TTTTCCTTGAGGAGG Pden_3141 321760 - 322095 + | hypothetical protein Pden_3142 322627 - 322388 - | hypothetical protein Pden_3143 322642 - 322848 + | cold-shock DNA-binding domain-containing protein Pden_3144 322903 - 323103 + | hypothetical protein TERM 205 323105 - 323092 - f 79 -2.3 -5.00616 | overlap 323103 GTGCCTGCGAAAAAA CGCAA GAAA TAGCG GATGCGCGGGGGCAC TERM 206 323111 - 323124 + F 70 -5.9 -4.23213 | opp_overlap 323103 AGAAATAGCGGATGC GCGGG GGCA CCTGC TTTCTTCGCTGTAAC Pden_3145 323419 - 323967 + | heat shock protein Hsp20 TERM 207 323995 - 324013 + F 93 -17.4 -3.5394 | opp_overlap 323985 323984, overlap 323993 ACAATCCGCGCATGG CGCCGGGC AGC GCCCGGCG TTTCCGGCAACCTTT Pden_3146 324049 - 324552 + | heat shock protein Hsp20 TERM 208 324588 - 324607 + F 70 -13.6 -2.52676 | opp_overlap 324546 CGCCGCCGCATCCAG CCTTCCCC CGCA GGGGAAGG TCCATTGACGGGATC Pden_3147 324652 - 325017 + | hypothetical protein TERM 209 325027 - 325049 + F 100 -17.7 -4.95547 | GCGTGACGTCCCGAA CGGCCCGGC AACCC GCCGGGCCG TTTTCTTGTTCTCCG TERM 210 326460 - 326472 + G 78 -9.1 -4.30576 | opp_overlap 326455, overlap 326429 CTGGAACTGATCCGC GACGG CAG CCGTC TTTTCATCGTCGCAA Pden_3148 325116 - 326492 + | protease Do TERM 211 326623 - 326596 - T 78 -14.2 -3.28712 | gap 1 TTGCCGGTTTCAGAA CGCCAGCCCGCAG GCC CTGCGGA-TGGCG AGTTGGACCGGCGAG Pden_3149 327381 - 326590 - | phytanoyl-CoA dioxygenase TERM 212 327282 - 327259 - G 79 -14.6 -3.29511 | gap 1 CGCAGCTGCCCACAA CTCGTCCCGGC ATT GCCGGG-CGAG GTCGGTGGGGAAGGC Pden_3150 328374 - 327688 - | protein of unknown function DUF899, thioredoxin family protein Pden_3151 328642 - 329901 + | tetratricopeptide TPR_4 Pden_3152 329911 - 330552 + | hypothetical protein TERM 213 330591 - 330634 + F 89 -13.2 -4.03234 | gap 1, opp_overlap 330577 ACCGGCCCCTCGCTC GGAACCTGACAGCG-GGCCTG TGG CAGGCTATGCTGTTGGGGTCC TTTCTATCAGCCAGC Pden_3153 330661 - 331068 + | cupin 2 domain-containing protein TERM 214 331791 - 331812 + G 75 -8.7 -4.15044 | gap 1 GGTACCGGGAGGGCA TGGTCGGCGC CGC GCGCTG-CCA TTTGTTCGACGCGCA Pden_3154 331073 - 331906 + | aminoglycoside N(3')-acetyltransferase Pden_3155 331919 - 332353 + | methyltransferase type 12 Pden_3156 332449 - 332766 + | histone family protein nucleoid-structuring protein H-NS Pden_3157 332782 - 333399 + | plasmid pRiA4b ORF-3 family protein Pden_3158 333475 - 333834 + | hypothetical protein Pden_3159 333864 - 334322 + | gentamicin 3'-N-acetyltransferase Pden_3160 335831 - 334803 - | transposase IS116/IS110/IS902 family protein TERM 215 335217 - 335233 + g 75 -6.5 -4.39426 | overlap 335218 TTCTTCGCCGAATTG GGCTTCG CGA CGAAGCG TTTTCTCGAGGTCTG Pden_3161 335940 - 336263 + | transposase IS3/IS911 family protein TERM 216 336688 - 336700 + G 72 -3.3 -4.63044 | TTTCACCTATGTTGC CACCT GGA AGGGG TTTGTTTATGTCGCT Pden_3162 336263 - 337168 + | integrase catalytic subunit Pden_3163 337267 - 337683 + | hypothetical protein TERM 217 337692 - 337723 + F 87 -3.7 -5.14563 | gap 2 GGGCTGATCCGAGGG GGCGGTACTGACGGA CATT TCCGCC--TGCCGCC TTTTTTCCTGCCGCA Pden_3164 338133 - 338810 + | DNA methylase N-4/N-6 domain-containing protein TERM 218 338850 - 338824 - f 78 -14.4 -3.29043 | overlap 338812 338825 AAGCCCTGCCGACAA GGGTGCCCGTCC CCG AGACGGGCACCA CACCCCACAGCTTCA TERM 219 338849 - 338825 - f 83 -17.9 -2.57211 | overlap 338824 AGCCCTGCCGACAAG GGTGCCCGTCC CCG AGACGGGCACC ACACCCCACAGCTTC Pden_3165 338882 - 339184 + | hypothetical protein TERM 220 339231 - 339191 - f 100 -18.9 -3.63068 | CGACACTAGCCCAAA GCATCACGGCCGCCGGTCC ATC GGATCGGCGGCCGTCGCGC GTCCGATCCCTGCCG Pden_3166 339330 - 340253 + | hypothetical protein Pden_3167 341031 - 341438 + | single-strand binding protein TERM 221 341454 - 341475 + F 95 -15.1 -4.13767 | GCGGGAGGCCAAGGG CCCGGCGGT TCCA GCCGCCGGG TTTTCCCATGGGCGC TERM 222 341557 - 341525 - f 100 -22.8 -3.48276 | GCGCCGCCCAGAGAA GGCTTCCCGACCGG ATCGA CCGGCCGGGAAGCC TCCGGCGCGGGCCTG Pden_3168 341929 - 342132 + | hypothetical protein TERM 223 342217 - 342195 - f 70 -11.2 -3.40403 | GTCCGGTCAGCAGAA GCGCCCGGAT CGG ACCGGGGCGC AGACTGGAGACCAAC Pden_3169 342234 - 342449 + | hypothetical protein Pden_3170 342529 - 342795 + | hypothetical protein Pden_3171 343163 - 342906 - | XRE family transcriptional regulator Pden_3172 343217 - 343663 + | hypothetical protein TERM 224 343760 - 343740 - f 82 -3.9 -4.9792 | overlap 343742 TAGCGCAGACAAAAA CTTCCAACC CTT GGCTGAACG CGCGAGAACTGGCTT Pden_3173 343788 - 344096 + | hypothetical protein Pden_3174 344116 - 344568 + | hypothetical protein Pden_3175 344690 - 345589 + | hypothetical protein Pden_3176 346171 - 345773 - | hypothetical protein Pden_3177 346452 - 346168 - | AbrB family transcriptional regulator Pden_3178 346610 - 346891 + | putative transcriptional regulator TERM 225 347967 - 347917 - g 77 -15.3 -3.12289 | gap 1, opp_overlap 347913, overlap 347909 347907 347919 347924 347945 TAAAAGACTCTAACA TAGTAGAGGCGCGCCGGGCGGTGG ATAA CCCCCGCCCGG-GCGCCCATACGG TCCCTCATTCGCGAA TERM 226 347965 - 347919 - g 95 -22.3 -3.10901 | gap 1, opp_overlap 347913, overlap 347909 347907 347917 347924 347945 AAAGACTCTAACATA GTAGAGGCGCGCCGGGCGGTGG ATAA CCCCCGCCCGG-GCGCCCATAC GGTCCCTCATTCGCG TERM 227 347960 - 347924 - g 89 -23 -2.92175 | gap 1, opp_overlap 347913, overlap 347907 347919 347917 347945 CTCTAACATAGTAGA GGCGCGCCGGGCGGTGG ATAA CCCCCGCCCGG-GCGCC CATACGGTCCCTCAT Pden_3179 346902 - 348014 + | replication protein A Pden_3180 348011 - 348313 + | hypothetical protein Pden_3181 348310 - 348798 + | hypothetical protein Pden_3182 348795 - 350282 + | C-5 cytosine-specific DNA methylase Pden_3183 350279 - 350881 + | conjugal transfer protein precursor Pden_3184 350878 - 351216 + | hypothetical protein Pden_3185 351220 - 352026 + | lytic transglycosylase, catalytic Pden_3186 352076 - 352657 + | hypothetical protein TERM 228 352701 - 352737 + F 100 -27.3 -3.79113 | GGGTTTTAGCGTAGA GCCGGTGGGTGCGGCCC TGC GGACCGCGCCCACCGGC TTGTTATGGCAAGGT TERM 229 352819 - 352833 + F 84 -7 -4.7416 | overlap 352818 CGGGGCCGGTCGGTC GGCGAC GGT GCCGCC TTTTTGGGATTTTCC TERM 230 353081 - 353117 + G 82 -15.8 -3.28712 | gap 1 CGGTCACTCCACCTT CGGGCGCGGGCGCGCCG GCTT CGGC-CGCTCGCGGCTG TTCTCGCCCCAGCGC TERM 231 354479 - 354454 - g 72 -8.3 -4.07687 | gap 1 ATCTCGCCCGGAAAA CCGGG-CTGC CGCATGT GCAGGCCCGG CCCGGCGATCATGTC Pden_3187 352908 - 354701 + | hypothetical protein TERM 232 354932 - 354967 + G 70 -8.8 -3.87994 | overlap 354954 TATGCCCCGCGCATC TTTGCCGAGGGCGGCG TCAT CGCCGCCTCGGGCGGG TTTCTCGCCATCGGT TERM 233 355480 - 355459 - g 73 -7.3 -4.12902 | CAACCATTGGGAAAA GACCAGC CACGCCCT GCTGGTC GGCGTCATCCTGCAT TERM 234 356060 - 356050 - g 78 -8.2 -4.26019 | GAACCAGATCGAAAA GGCC TAT GGCC CCAACAATTCGATCC TERM 235 356554 - 356518 - g 82 -15.1 -3.41527 | GAAGCGCCAGGACAA GGCCAATTCCGGCCTGC GCC GCGAGCCGGAACTGCCC GAGCATGTCGAGATC Pden_3188 354719 - 356728 + | TRAG family protein Pden_3189 356759 - 357280 + | hypothetical protein Pden_3190 357827 - 357306 - | hypothetical protein Pden_3191 358063 - 357824 - | hypothetical protein TERM 236 357967 - 357951 - G 71 -2.1 -4.63044 | opp_overlap 357952, overlap 357947 357952 AGCCACAGAAACAAA TGACGGC AAT GCCCTCT TTGCATCCCTAGGTG TERM 237 358054 - 358020 - G 70 -3.5 -4.49337 | TGATAAGTGACAAAA GGCC-GTTCGACACCGC TCC GTGG-GCCTAACCGGCC TCGTCCCACGGGTCG Pden_3192 358470 - 358045 - | PilT domain-containing protein Pden_3193 358730 - 358467 - | putative plasmid stabilization protein Pden_3194 359010 - 360014 + | type II secretion system protein E TERM 238 360089 - 360108 + G 90 -16.4 -3.68073 | AGCCTGTTCATGGCT CCGGCGGC CCAT GCCGCCGG TTCTTCCATGCCCTG Pden_3195 360011 - 360343 + | conjugal transfer protein TrbC TERM 239 360450 - 360414 - g 70 -15.1 -2.70932 | TCGCGCCCTGAACGA GCCGATCCTGCTCGGCG GCG CGCCGAGGAGCATCGCC ATCCTGAACGGCACG Pden_3196 360343 - 360624 + | conjugal transfer protein TrbB Pden_3197 360637 - 363270 + | AAA ATPase Pden_3198 363267 - 364064 + | conjugal transfer protein TrbJ Pden_3199 364085 - 364372 + | hypothetical protein Pden_3200 364380 - 365702 + | TrbL/VirB6 plasmid conjugal transfer protein Pden_3201 365699 - 366388 + | conjugal transfer protein TERM 240 367072 - 367031 - g 71 -11.3 -3.58343 | opp_overlap 367053 GGCATTATCCGGAAA GCGCGTCTGCGGCCGCACA GCGT CGCGCGGCTCCTGCCGCGC CGGTGATTCCGGGGA Pden_3202 366385 - 367428 + | conjugal transfer protein TrbG/VirB9/CagX Pden_3203 367428 - 368594 + | conjugation TrbI family protein Pden_3204 368591 - 368845 + | hypothetical protein Pden_3205 369791 - 368847 - | LysR family transcriptional regulator TERM 241 369639 - 369602 - G 70 -3.9 -4.4078 | TGTGGCGAATGAAAA GCGCCGCGCCGATTTCG TCCT CGAGATCGCGGATGCGC CGGCTGATCGCGGAT TERM 242 369813 - 369855 + r 72 -8.4 -4.12532 | gap 1 CTCCCCTAAGGGCAC GCCGATGGAGTCTAGGCTT CACTCC GAGCCT-GCCGCCGTCGGC TTTGTGTCTGCGACG Pden_3206 370534 - 369824 - | regulatory protein GntR, HTH Pden_3207 372089 - 370806 - | TRAP dicarboxylate transporter, DctM subunit TERM 243 371440 - 371411 - G 72 -6.3 -4.26076 | opp_overlap 371428 371429 371431, overlap 371428 371431 CGACCGCGATCAAAA GCACGACCGGCCA GACA CGACCGCTGGTGC GGTGTTTGGCTGCCT Pden_3208 372653 - 372102 - | hypothetical protein TERM 244 372340 - 372321 - G 72 -4.9 -4.5081 | AAACACGTAAAGAAA GCCTAGG ACGAGA CCGAGGC GGAAGACGAATGCCT Pden_3209 373663 - 372650 - | TRAP dicarboxylate transporter- DctP subunit Pden_3210 374073 - 375254 + | iron-containing alcohol dehydrogenase Pden_3211 375275 - 376708 + | aldehyde dehydrogenase Pden_3212 376719 - 377762 + | alcohol dehydrogenase Pden_3213 377773 - 378576 + | enoyl-CoA hydratase/isomerase Pden_3214 378583 - 378828 + | hypothetical protein TERM 245 378950 - 378966 + T 70 -10.9 -3.41738 | overlap 378930 378949 CATCACCATGGTCCG TGCTCTG TGT CAGAGCA TCTCTTTCTTGCGCA Pden_3215 379333 - 378959 - | carboxymuconolactone decarboxylase Pden_3216 380335 - 379406 - | 3-hydroxyisobutyrate dehydrogenase TERM 246 379980 - 380002 + g 75 -5.5 -4.56597 | overlap 379966 GGGCCCCCGCTGACC GGGGCGTCT ATGAA ATATGCCCC TTTTTCCGCCAGAAA Pden_3217 380880 - 380455 - | cupin 2 domain-containing protein Pden_3218 381794 - 380901 - | beta-lactamase domain-containing protein TERM 247 381832 - 381803 - R 80 -13.6 -3.31144 | gap 1 CCTCCATCTTGACAA CGCACCCGCACGG GATAT CCG-GCAGGTGCG TCCAGTTGCGGAACT Pden_3219 382848 - 381847 - | TRAP dicarboxylate transporter- DctP subunit Pden_3220 383393 - 382965 - | thioesterase superfamily protein Pden_3221 384405 - 383452 - | hypothetical protein Pden_3222 385959 - 384445 - | hypothetical protein Pden_3223 386414 - 385965 - | hypothetical protein Pden_3224 388244 - 386490 - | acyl-CoA dehydrogenase domain-containing protein TERM 248 387032 - 386997 - G 84 -20.4 -2.87564 | CCATTCGCGGATATA GCCGTGGCCACCCAGC ACCT GCTGCGAGGCCACGGC CGTCTCGAAGCCGAA Pden_3225 390559 - 388262 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding Pden_3226 391677 - 390556 - | acetyl-CoA acetyltransferases Pden_3227 393029 - 391797 - | L-carnitine dehydratase/bile acid-inducible protein F Pden_3228 394610 - 393111 - | aldehyde dehydrogenase TERM 249 394531 - 394570 + g 71 -11.5 -3.60792 | gap 2, opp_overlap 394535 CGAGCCCCGTCCCAA TCCAGCCACTGGCCGCC GATGAAAA GGCGGCCGG-GGC-GGA TTTCCAGCTTCGCAC Pden_3229 394918 - 396066 + | hypothetical protein Pden_3230 396188 - 397768 + | AMP-dependent synthetase and ligase Pden_3231 397808 - 398662 + | IclR family transciptional regulator Pden_3232 399803 - 398991 - | histidine kinase Pden_3233 400685 - 400008 - | transposase IS116/IS110/IS902 family protein TERM 250 400422 - 400438 + g 70 -4.3 -4.39426 | overlap 400423 TTCTTCGCCGAATTG GGCTTCG CGA CGAGGCG TTTTCTCGAGGTCTG Pden_3234 401084 - 400725 - | hypothetical protein Pden_3235 401247 - 402308 + | hypothetical protein TERM 251 402320 - 402340 + F 80 -14.7 -3.13403 | overlap 402317 CTGACTTTCGGACAG GGCCACGTC ATC GGCGTGGCC TGTTCATCGGACGCA TERM 252 402355 - 402394 + F 81 -13.6 -3.53811 | gap 1, overlap 402358 CTGTTCATCGGACGC AGCTTGTGGCCGGGTTCGA TGA TCGA-CCCGGCCGCAATCC TTTCAGGGGAGTGAA TERM 253 402358 - 402391 + F 89 -18.3 -2.90615 | gap 1, overlap 402355 TTCATCGGACGCAGC TTGTGGCCGGGTTCGA TGA TCGA-CCCGGCCGCAA TCCTTTCAGGGGAGT Pden_3236 402410 - 403183 + | NmrA family protein Pden_3237 404078 - 403185 - | LysR family transcriptional regulator Pden_3238 404224 - 404697 + | hypothetical protein Pden_3239 404744 - 405418 + | hypothetical protein Pden_3240 405618 - 406619 + | hypothetical protein TERM 254 406833 - 406791 - g 74 -13.5 -3.38046 | gap 2, opp_overlap 406790, overlap 406789 406792 CGCGCAGCGGAAATA CGCGCGT-CATCG-CGGGCCA GAT CGGCCGGGCGATGGACGCGCA GGTCTTCGAGATCAT Pden_3241 406649 - 407218 + | twin-arginine translocation pathway signal TERM 255 407248 - 407223 - f 81 -11.1 -4.02022 | GGCAACGATGAGAAA TCGCGCCGCAG GTCT CTGCGGTGCAA TGATGGAGAAAGACG Pden_3242 407264 - 408247 + | aldo/keto reductase TERM 256 409291 - 409267 - g 75 -9.9 -4.07568 | GCTTCTGGCCCAAAA GCCCTGGATCG TCC CGATCCCCGGC ACGACGCAGATGGCG Pden_3243 408296 - 409462 + | aldo/keto reductase Pden_3244 409473 - 410462 + | aldo/keto reductase Pden_3245 410491 - 411477 + | hypothetical protein Pden_3246 411556 - 411753 + | hypothetical protein Pden_3247 411867 - 412448 + | transposase Pden_3248 413243 - 412476 - | regulatory proteins, IclR Pden_3250 414535 - 414038 - | hypothetical protein Pden_3251 414737 - 415615 + | alpha/beta hydrolase fold Pden_3252 415612 - 415989 + | MerR family transcriptional regulator Pden_3253 416027 - 417628 + | protein of unknown function DUF894, DitE TERM 257 417938 - 417983 + F 77 -5.4 -4.64598 | gap 1 GGCGACCAGATCTCG TC-GCATCAGGGCGCAGTTGA TGCGC TCAACAGCGGGCTGACGCAGA TTTTTGGCGTGATTC TERM 258 419130 - 419110 - g 79 -11.1 -4.07568 | overlap 419078 TCCGCCCGGCGAAAA GCACTGGCA CGG CGCCAGCGC TACTACCGCCATGAC Pden_3255 418832 - 419227 + | cupin 2 domain-containing protein TERM 259 419935 - 419899 - gf 91 -16.5 -3.62522 | opp_overlap 419880, overlap 419901 419902 CAAGCTGGTCAACAA CATGGCCAGCACCGCGA TCA TCTCGGTGCTGGCCGAG GCGCTGAGCATGGGC TERM 260 419933 - 419901 - gf 93 -17.7 -3.38991 | opp_overlap 419880, overlap 419899 419902 AGCTGGTCAACAACA TGGCCAGCACCGCGA TCA TCTCGGTGCTGGCCG AGGCGCTGAGCATGG TERM 261 419932 - 419902 - gf 100 -21.2 -2.63073 | opp_overlap 419880, overlap 419901 419899 GCTGGTCAACAACAT GGCCAGCACCGCGA TCA TCTCGGTGCTGGCC GAGGCGCTGAGCATG Pden_3256 419378 - 420307 + | 3-hydroxyisobutyrate dehydrogenase Pden_3257 420270 - 420716 + | carboxymuconolactone decarboxylase Pden_3258 420838 - 421839 + | TRAP dicarboxylate transporter- DctP subunit TERM 262 422126 - 422146 + F 70 -6 -4.25256 | opp_overlap 422125, overlap 422126 422130 CTTCACCAAAATATT CGCGCCGC GCCGG GCGGTTCG TTGTTTTCCTGCAAA TERM 263 422209 - 422162 - f 78 -13.4 -3.53012 | gap 1, opp_overlap 422169, overlap 422167 TTGTTTTCCTGCAAA GGAG-AGATGTCGCGCGACCATC CAT GAAGGTCGCCCGCCATCTTCGCC ACCTGCATAAGTTGT TERM 264 422203 - 422167 - f 79 -15.1 -3.00525 | opp_overlap 422169, overlap 422162 TTCCTGCAAAGGAGA GATGTCGCGCGACCATC CAT GAAGGTCGCCCGCCATC TTCGCCACCTGCATA Pden_3259 422255 - 422542 + | putative integrase/recombinase Pden_3260 422920 - 424332 + | aldehyde dehydrogenase TERM 265 424349 - 424368 + F 81 -16.4 -2.72991 | TGCCCGACTCGCCGC GCCGCCGC TCAG GCGGCGGC TGGTTGCCGGTATCC TERM 266 424947 - 424933 - f 79 -5.7 -4.59773 | CTGGATGCCGAAAAA CTCGA AGAGA TCGAG AACAGCATCCTCGCC Pden_3262 425326 - 426882 + | transposase, IS204/IS1001/IS1096/IS1165 family protein Pden_3263 427194 - 426907 - | hypothetical protein Pden_3264 429057 - 427531 - | aldehyde dehydrogenase TERM 267 429019 - 428984 - G 73 -12.6 -3.53012 | gap 1, opp_overlap 428985, overlap 428985 GGCTCGCTGGCGAAA CGCTGCTCGCTGGCGAC CCA GTCGCCACCGATCAG-G TGCTTGCCGTGGGGG TERM 268 429122 - 429092 - R 75 -6.8 -4.4009 | overlap 429093 429120 429121 GTTGATTTCAGAAAA TGATCGTTTGTCCC GCC GGGACAATAGATCG CGATCCTGCGATGGC Pden_3265 430152 - 429142 - | ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like TERM 269 429436 - 429420 - G 72 -9.3 -3.99957 | TCAAATAGCCATAAA GGGCGCC ATA GGCGGCC ATGACCGGAACCAGC TERM 270 430154 - 430139 - G 71 -2.4 -4.64676 | opp_overlap 430139 430142 GCACTTCCAAGAAAA CGGCGG CGAT CCATCG TTGATTTCCTCCCTA TERM 271 430490 - 430449 - H 71 -13.1 -2.93382 | opp_overlap 430459 CGGCATATCCACATA TGCGTCCCG-GCGCCCGAG GGGTGT CTCG-GCGAACGGGACGCA GCCGCAAGAGGAAGC TERM 272 430698 - 430678 - g 77 -15.5 -3.23047 | overlap 430676 430671 TCTACAAAGGCAAGA CGCTGACCA TTC TGGTCAGCG CGCAATCGGGGAGCC Pden_3266 430569 - 431600 + | hypothetical protein Pden_3267 431624 - 432613 + | amidohydrolase 2 TERM 273 433570 - 433623 + G 73 -7.4 -4.13767 | opp_overlap 433588 433589 GCGGGGCGTCATCGC GCCGGAATCGGC-CAACAACGCCCGC GACG GCGGCAGTC-TTGTGCCGATGCTGGC TTTTGGCGTGCCGGG Pden_3268 432650 - 434680 + | hypothetical protein Pden_3269 434713 - 435375 + | hypothetical protein Pden_3270 436701 - 435394 - | major facilitator transporter TERM 274 435505 - 435460 - G 100 -25.6 -3.57798 | CAGAAGGAAGCAGAA GGTCAGCATTGCCGCCGCGA TCAGCG TCGCGGCGGCAATGCCGATC CGGTCGGCGAAAAAG Pden_3271 436878 - 438143 + | LysR family transcriptional regulator TERM 275 438163 - 438190 + T 85 -12.6 -4.13767 | opp_overlap 438147 438165, overlap 438164 GCCTTATCGGAAGGC AAGGCCCGGAGC TTGT GCTCCGGGCCCC TTTTCACATCAGCGA TERM 276 438164 - 438189 + T 82 -16.1 -3.08046 | opp_overlap 438147 438165, overlap 438163 CCTTATCGGAAGGCA AGGCCCGGAGC TTGT GCTCCGGGCCC CTTTTCACATCAGCG TERM 277 438188 - 438165 - T 100 -19.6 -3.18274 | opp_overlap 438164 438163, overlap 438147 CTTATCGGAAGGCAA GGCCCGGAGC TTGT GCTCCGGGCC CCTTTTCACATCAGC Pden_3272 439045 - 438194 - | HpcH/HpaI aldolase Pden_3273 440046 - 439072 - | hypothetical protein Pden_3274 440299 - 441330 + | amidohydrolase 2 Pden_3275 441327 - 443006 + | thiamine pyrophosphate binding domain-containing protein TERM 278 443148 - 443124 - g 71 -9.9 -3.70773 | TCGCAGACGGAACAA CCTGGACGGGC CTG ACCCGACCAAG GGGAGAAGCCTTGCG Pden_3276 443021 - 443260 + | hypothetical protein Pden_3277 443257 - 444138 + | amidohydrolase 2 Pden_3278 444135 - 445052 + | hypothetical protein TERM 279 445075 - 445103 + F 100 -16.1 -4.82855 | opp_overlap 445082, overlap 445082 CCCTGCATGGGAAAT GAGGAAAGGGGGG CTG CCCCCCTTTTTTC TTTTTAGATTTCCTG TERM 280 445082 - 445096 + F 100 -12.8 -5.93252 | opp_overlap 445082, overlap 445075 TGGGAAATGAGGAAA GGGGGG CTG CCCCCC TTTTTTCTTTTTAGA TERM 281 445096 - 445082 - f 86 -12.8 -3.8901 | opp_overlap 445082 445075 TGGGAAATGAGGAAA GGGGGG CTG CCCCCC TTTTTTCTTTTTAGA TERM 282 445259 - 445276 + F 100 -6.9 -5.24129 | CGTCGATTGTACGGT CGGGCGT GGAG GCGTCCG TTTTTTATGGGGGGG TERM 283 445521 - 445510 - g 78 -5.8 -4.57341 | AATTTGGCGCAAAAA CCTG GGTT CAGG GCGATCACAACAGCC TERM 284 445838 - 445857 + G 72 -4.2 -4.54047 | gap 1, overlap 445842 GGGAGGGGATCTGAC CCGA-GAGG TTT CCGCCTCGG TTTTCTATCGGCTAA Pden_3279 445296 - 446237 + | hypothetical protein Pden_3280 447207 - 446254 - | integrase catalytic subunit Pden_3281 447565 - 449121 + | transposase, IS204/IS1001/IS1096/IS1165 family protein Pden_3282 449533 - 449183 - | hypothetical protein Pden_3283 451183 - 449813 - | integral membrane sensor signal transduction histidine kinase Pden_3284 451839 - 451180 - | two component transcriptional regulator TERM 285 452221 - 452167 - g 71 -2.6 -4.57353 | gap 1, overlap 452171 TGCTACGAGATAAAA GGCACGGACCGGGAAGGAC-GCCGC ATCGAG GCGACGGTCGATCCCGGCACGCTTC AGGTGATCGAGGTCG Pden_3285 451981 - 452295 + | hypothetical protein Pden_3286 452288 - 452920 + | cytochrome B561 TERM 286 452945 - 452971 + F 100 -16.5 -4.41348 | overlap 452946 ATTCCCGCTGTTGTT GCGGCCCCGCC TGTCT GGCGGGGCCGG TTTGTTTCGCGCGAC TERM 287 452946 - 452970 + F 100 -20 -3.24488 | overlap 452945 TTCCCGCTGTTGTTG CGGCCCCGCC TGTCT GGCGGGGCCG GTTTGTTTCGCGCGA Pden_3287 453110 - 453412 + | hypothetical protein Pden_3288 453524 - 453904 + | hypothetical protein Pden_3289 453931 - 454401 + | hypothetical protein Pden_3290 454411 - 456618 + | oxidoreductase FAD/NAD(P)-binding subunit TERM 288 456632 - 456671 + G 86 -12.8 -4.18494 | gap 1 GACCCGGGCCGCCAC GCGCTGAACGGCCCG-ACC ATG GGTACGCGCTGGTCGGCGC TTTTCCATGCCGATG Pden_3291 456599 - 457591 + | ApbE family lipoprotein Pden_3292 457734 - 458207 + | hypothetical protein TERM 289 458227 - 458257 + T 100 -27.6 -3.40403 | ACGGGCGCAGGCATG GGCCGGCGCGGGCG TCA CGCCTGCGCCGGCC TTGTCCTGCACGGGC Pden_3293 459146 - 458241 - | LysR family transcriptional regulator Pden_3294 459255 - 459473 + | heavy metal transport/detoxification protein TERM 290 459712 - 459743 + G 72 -9.4 -3.97636 | gap 1 GGCTCTGACATCGCG TGGCGGGCGGTGCAG GCG CTGCGCA-TCCGCCA TTTCTCGATTGAACT Pden_3295 459535 - 461454 + | heavy metal translocating P-type ATPase TERM 291 461479 - 461505 + F 100 -19.4 -4.2558 | opp_overlap 461477 461476 CCTCATCTACAATTC CGCTCCCGTGCC CAT GGCGCGGGGGCG TTTTCATGGGGGATG Pden_3296 461511 - 462173 + | hypothetical protein Pden_3297 464129 - 462189 - | heavy metal translocating P-type ATPase Pden_3298 464571 - 464191 - | hypothetical protein Pden_3299 465278 - 464586 - | ABC transporter related Pden_3300 466417 - 465284 - | hypothetical protein Pden_3301 467559 - 466414 - | RND family efflux transporter MFP subunit TERM 292 467527 - 467506 - G 78 -9.3 -4.34263 | overlap 467507 GGTGAAGAACAGAAA GCCGGCAGC GACA GCCGCCGCC AGAAGAAGACCCGAT TERM 293 467542 - 467565 + g 72 -4.6 -4.4078 | gap 1, overlap 467548 CAGAAGAAGACCCGA TAGCCAGATGC GCC GCATC-GTCTA TTTTCCTTCCGCGGC Pden_3302 468210 - 467563 - | TetR family transcriptional regulator TERM 294 467659 - 467636 - G 73 -10.2 -3.84451 | gap 1, overlap 467637 GCTCGCAAATCGAAA TCGC-GGGCGC CGA GCGCCCAGCGG ATCGCCACGCCCTGC TERM 295 470081 - 470067 - g 71 -11.4 -3.59262 | GCCGATATGTCGAAA CGCCTG TCG CAGGCG AGATGGTGCGCGCTT Pden_3305 470021 - 471202 + | filamentation induced by cAMP protein Fic Pden_3306 471779 - 471348 - | hypothetical protein Pden_3307 472897 - 471872 - | transposase IS66 Pden_3308 473305 - 472952 - | IS66 Orf2 family protein Pden_3309 473631 - 473299 - | transposase IS3/IS911 family protein Pden_3310 473734 - 474063 + | hypothetical protein TERM 296 474091 - 474061 - T 77 -12.7 -3.30124 | gap 1, opp_overlap 474061 CCCCACTCCTCACAA TGAGCTCATCCGGG TGTC CCCAG-TGAGCTCA TTCTGAGCGCGCACA Pden_3311 475173 - 474208 - | response regulator receiver protein Pden_3312 476507 - 475170 - | integral membrane sensor signal transduction histidine kinase Pden_3313 476986 - 476504 - | hypothetical protein TERM 297 477018 - 477008 - H 77 -4.6 -4.69549 | opp_overlap 477012, overlap 477012 AACCCAAAATGAAAA CCAG GTT CCGG ACTGAACTCTATCAC Pden_3314 477123 - 477602 + | hypothetical protein Pden_3315 477604 - 478176 + | hypothetical protein Pden_3316 478185 - 478664 + | hypothetical protein Pden_3317 478661 - 479188 + | hypothetical protein TERM 298 479529 - 479554 + G 71 -2.5 -4.56597 | gap 1, opp_overlap 479529, overlap 479532 479534 479535 TACCTCGCGAGAGGA CC-GCAGCACCT CGA AGGTGGTTCTGG TTTTTCGCAACACCC Pden_3318 479185 - 479709 + | hypothetical protein Pden_3319 479733 - 480704 + | hypothetical protein Pden_3320 480701 - 483268 + | von Willebrand factor, type A Pden_3321 483265 - 483801 + | hypothetical protein Pden_3322 483798 - 484283 + | hypothetical protein TERM 299 484352 - 484386 + G 74 -12 -3.5936 | overlap 484353 CATTTTGTCCTGCGC CGCCGTTCCCGCGCTG GCG CAGCGCGCGAGCGACA TTTCGGGCCTTTGCG TERM 300 484353 - 484385 + G 70 -15.5 -2.75294 | overlap 484352 ATTTTGTCCTGCGCC GCCGTTCCCGCGCTG GCG CAGCGCGCGAGCGAC ATTTCGGGCCTTTGC Pden_3323 484311 - 484901 + | hypothetical protein TERM 301 485298 - 485284 - g 71 -2.7 -4.62069 | TCGCGACCTGAAAAA CGGTG TGACG CCCCG GTCCGACACAAGGAA Pden_3324 484910 - 485728 + | type III restriction enzyme, res subunit Pden_3325 485821 - 488112 + | hypothetical protein Pden_3326 490102 - 488297 - | recombinase TERM 302 488411 - 488386 - G 70 -9 -3.90112 | overlap 488388 GCGGTCGCAAGTAAA GATGGTTGCG TGCCCC CGCAACCAAC GATAATTGCGAAACC TERM 303 488419 - 488455 + g 72 -6.7 -4.36914 | opp_overlap 488425, overlap 488425 CAACCAACGATAATT GCGA-AACCTCCGTAGC ATTAA GC-GCGGAGGTTTTTGC TTTTGTACGCCCCGG TERM 304 488425 - 488448 + g 89 -6.7 -5.1417 | gap 1, opp_overlap 488425, overlap 488419 ACGATAATTGCGAAA CCTCCGTAGC ATTAA GC-GCGGAGG TTTTTGCTTTTGTAC TERM 305 489683 - 489710 + g 79 -14.9 -3.29144 | gap 1, overlap 489668 GGACTTGCCGTCCTC GACCCGGCCGCG CAACC CGCGGC-GGGTC TTGTCGGCCAGGTCC Pden_3327 490103 - 490552 + | hypothetical protein Pden_3330 492010 - 492963 + | AraC-like transcriptional regulator Pden_3331 493215 - 493538 + | hypothetical protein Pden_3332 493535 - 494413 + | XRE family plasmid maintenance system antidote protein Pden_3333 494957 - 494397 - | transposase, IS4 family protein Pden_3334 495252 - 495524 + | hypothetical protein Pden_3335 495898 - 495620 - | SH3 type 3 domain-containing protein Pden_3336 495960 - 496316 + | hypothetical protein Pden_3337 497838 - 496474 - | chromate transporter Pden_3338 498680 - 497835 - | rhodanese domain-containing protein Pden_3339 499602 - 498895 - | NADPH-dependent FMN reductase Pden_3340 500675 - 499599 - | arsenical-resistance protein Pden_3341 501638 - 500685 - | arsenate reductase Pden_3342 501993 - 501631 - | regulatory protein, ArsR TERM 306 502707 - 502751 + r 93 -18 -3.5393 | gap 1, overlap 502701 GCGCCATCAGCCTGT CCATCG-CGCCGGGCTTGTCA TGAA TGGCAAGCCTGTCGACGATGG TTTCCGAGGCCTCGT Pden_3344 504177 - 502687 - | sulphate transporter TERM 307 503188 - 503173 - G 72 -6.8 -4.32034 | CGACGACCAGGAAAA GGTGCC GACT GACACC ATGACCATGATCGCC TERM 308 504717 - 504727 + G 78 -6.8 -4.57569 | overlap 504714 TGCTGCTGCCGGTGG CCTG GGT CAGG TTTTTGCCCGCGTGA Pden_3345 504673 - 504870 + | hypothetical protein TERM 309 504913 - 504893 - f 70 -13.9 -2.57244 | opp_overlap 504893, overlap 504889 CCATCGATGAACGGA CCCCGCGGC GAT GCCTCGGGG TTTTTTCATGCGCGG TERM 310 504893 - 504913 + F 100 -13.9 -5.14563 | opp_overlap 504893 504889 CCATCGATGAACGGA CCCCGCGGC GAT GCCTCGGGG TTTTTTCATGCGCGG Pden_3346 505006 - 505248 + | hypothetical protein Pden_3347 505270 - 505680 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_3348 505686 - 506120 + | methyltransferase type 12 Pden_3349 506216 - 506533 + | histone family protein nucleoid-structuring protein H-NS Pden_3350 506549 - 507166 + | plasmid pRiA4b ORF-3 family protein Pden_3351 508096 - 507323 - | methyltransferase type 11 Pden_3352 508181 - 508453 + | hypothetical protein Pden_3353 508469 - 509425 + | cation diffusion facilitator family transporter Pden_3354 509433 - 509882 + | hypothetical protein Pden_3355 509912 - 510370 + | gentamicin 3'-N-acetyltransferase Pden_3356 510604 - 511020 + | hypothetical protein TERM 311 511092 - 511066 - f 73 -12.2 -3.33696 | overlap 511067 GTCGCTTTGAACCAA GGTGATCCGCGC CGG GCGCGGATCGCG GCTGTCCAGAAGCCG TERM 312 511091 - 511067 - f 77 -15.7 -2.60075 | overlap 511066 TCGCTTTGAACCAAG GTGATCCGCGC CGG GCGCGGATCGC GGCTGTCCAGAAGCC TERM 313 511102 - 511155 + F 81 -4.9 -4.85918 | gap 1, opp_overlap 511104, overlap 511103 511104 ATCGCGGCTGTCCAG AAGCCGTGCCGGCGGCTCGACCGGGC CTT GCCCGGCTCACCC-CCGGCCCGACGG TTTTCTTATCTCGTG TERM 314 511153 - 511104 - f 86 -15.5 -3.28712 | gap 1, opp_overlap 511103 511102 511104 CGCGGCTGTCCAGAA GCCGTGCCGGCGGCTCGACCGGGC CTT GCCCGG-CTCACCCCCGGCCCGAC GGTTTTCTTATCTCG Pden_3357 511449 - 512126 + | DNA methylase N-4/N-6 domain-containing protein Pden_3358 512201 - 512491 + | hypothetical protein TERM 315 512550 - 512512 - f 100 -23.2 -4.1196 | overlap 512517 AAGCCAGCCCCAAAA CATCACGGCCGCCGATCC ATC GGATCGGCGGCCGTCGTG CGTGCAAGGCCGCAG TERM 316 512545 - 512517 - f 100 -26.1 -2.93891 | overlap 512512 AGCCCCAAAACATCA CGGCCGCCGATCC ATC GGATCGGCGGCCG TCGTGCGTGCAAGGC TERM 317 512613 - 512583 - f 88 -9.7 -4.652 | gap 2, overlap 512584 512585 AAAGCACCGCAAAAA TCGCGCTCGCCGGGC ATG GCCCGGCT--CGCGA AGGTAAAGCGAAAAC Pden_3359 512788 - 513231 + | hypothetical protein Pden_3360 513475 - 513239 - | hypothetical protein TERM 318 513685 - 513652 - H 70 -11.7 -3.31415 | gap 1, opp_overlap 513680 GACCAGCAAAGGGAA GCGAAGCGGCATCGCC GCG GGTGGTGCCGCTTC-C GGGGGGCTTTGCCGA Pden_3361 513986 - 514396 + | single-strand binding protein TERM 319 514412 - 514433 + F 95 -15.1 -4.18018 | GCGGGAGGCCAGAGG CCCGGCGGT TCCA GCCGCCGGG TTTTCCATGGGCAAG Pden_3362 514440 - 514847 + | hypothetical protein Pden_3363 514954 - 515157 + | hypothetical protein Pden_3364 515762 - 515974 + | hypothetical protein Pden_3365 516369 - 515995 - | hypothetical protein Pden_3366 516805 - 516539 - | hypothetical protein Pden_3367 517215 - 516952 - | hypothetical protein Pden_3368 517637 - 517401 - | XRE family transcriptional regulator Pden_3369 517829 - 518098 + | hypothetical protein TERM 320 518494 - 518541 + G 81 -10.5 -4.2828 | opp_overlap 518492, overlap 518495 CGCTTGCAATCGACG ACGGTCGCCACC-TCGATCCGCC AGCC GGCGGAACGGCGGCGGC-ACCGG TTTTCCTGGATCAAC TERM 321 518495 - 518540 + G 72 -14 -3.16647 | opp_overlap 518492, overlap 518494 GCTTGCAATCGACGA CGGTCGCCACC-TCGATCCGCC AGCC GGCGGAACGGCGGCGGC-ACCG GTTTTCCTGGATCAA Pden_3370 518095 - 518964 + | putative replication protein A TERM 322 519155 - 519171 + F 70 -8 -3.99898 | GTAGGCGCGCGTCGG TCGGTG GAGAA CACCGA TTTGTCCCTTAATTC Pden_3371 519220 - 519720 + | hypothetical protein Pden_3372 519717 - 521225 + | C-5 cytosine-specific DNA methylase Pden_3373 521222 - 521788 + | conjugal transfer protein precursor Pden_3374 521824 - 522159 + | hypothetical protein Pden_3375 522163 - 522981 + | lytic transglycosylase, catalytic Pden_3376 523031 - 523612 + | hypothetical protein TERM 323 523661 - 523687 + F 100 -20.8 -4.07568 | opp_overlap 523658 523657 TCAGCGAAGAATGGC GCGCCGCGTCCC GGT GGGTCGCGGCGC TTTTAGGACGGCAAG TERM 324 523725 - 523709 - f 91 -10.8 -4.67608 | GACGGCAAGATAAAA GCCCGC GAGGT GCGGGC AGGGCGGTCGGGGGT Pden_3377 523854 - 525593 + | hypothetical protein Pden_3378 525662 - 525913 + | prevent-host-death family protein Pden_3379 525917 - 526351 + | PilT domain-containing protein TERM 325 526469 - 526457 - T 70 -4.8 -4.37886 | CTATGCGGGACAAAA CTGC CGTGC GCAG TCGCAGCATCGGAAC Pden_3380 526813 - 526562 - | hypothetical protein Pden_3381 526818 - 527030 + | helix-turn-helix domain-containing protein Pden_3382 527922 - 527269 - | class II aldolase/adducin family protein Pden_3383 529178 - 527919 - | type III effector Hrp-dependent outers TERM 326 528187 - 528204 + g 76 -7.7 -4.26076 | gap 1, opp_overlap 528168, overlap 528189 TCGACCACCACGCCC GCTTGGGC GCG GCCC-AGC TTTTCCTGCGCCTGC TERM 327 528737 - 528679 - G 70 -15.2 -2.78816 | gap 1, opp_overlap 528732 528734 GCATGCGCCACCAGA TCGACGGGCCGCGCCG-TCTGCGCCGC CAGCAC GCGGCGCAGATCGGCATCGCGCATCGG CGTCAGCGGATGATC TERM 328 528968 - 528945 - G 70 -8.8 -3.82946 | gap 1, opp_overlap 528948, overlap 528946 GTATTTGAAATACAA CTGCCGCGCGC CGC GCGCTCG-CAG CACCCGGGCCGAGGC Pden_3384 530473 - 529196 - | TRAP dicarboxylate transporter, DctM subunit Pden_3385 531030 - 530470 - | tripartite ATP-independent periplasmic transporter DctQ Pden_3386 531698 - 531027 - | cyclase family protein TERM 329 531397 - 531430 + g 74 -12.3 -3.5627 | overlap 531374 531398 531407 AGCAGGATGATGTCA CCCTGCTTGCCGCCG GGAT CGGCGGCGGCCAGGA TTTCCGGCGTGATCT TERM 330 531398 - 531429 + g 74 -15.8 -2.73441 | overlap 531374 531397 531407 GCAGGATGATGTCAC CCTGCTTGCCGCCG GGAT CGGCGGCGGCCAGG ATTTCCGGCGTGATC Pden_3387 532722 - 531715 - | TRAP dicarboxylate transporter, DctP subunit Pden_3388 534163 - 532760 - | SAF domain-containing protein TERM 331 533710 - 533725 + g 78 -6.1 -4.56597 | opp_overlap 533709 GATCGCCATCAACAG GGCTG ACCACG CAGCC TTTTTCCCGCGCCAG TERM 332 534489 - 534459 - g 84 -8.1 -4.70659 | opp_overlap 534463 534486 534486, overlap 534462 534477 TTGGATATCGAAAAA CAGTGGCCGCGCG GACAA CGCGCCGCCTTTG TCGCAAATTTCATTC TERM 333 534463 - 534485 + G 77 -11.9 -3.88583 | opp_overlap 534462 534459 534477 ATATCGAAAAACAGT GGCCGCGCG GACAA CGCGCCGCC TTTGTCGCAAATTTC Pden_3389 534444 - 535115 + | GntR family transcriptional regulator TERM 334 535314 - 535351 + T 72 -12.7 -3.10164 | gap 1, opp_overlap 535305 535306 535323 535324 GGGAAATGCGGCCAC GCAGCACAAGGCGGGCCC CAC GGGTCGG-CTTGAGCTGC TTCCCTCATCGCTGA Pden_3390 538231 - 535370 - | hypothetical protein TERM 335 536691 - 536679 - G 73 -10.5 -3.85698 | GCCTCTGGCCAGAAA CCGGC CAT GCCGG CCAAGGTGGCGCAGG Pden_3391 539467 - 538268 - | hypothetical protein Pden_3392 539919 - 539614 - | hypothetical protein TERM 336 541506 - 541476 - g 71 -2.5 -4.56597 | gap 1, overlap 541477 CGTCGCGGGCAAAAA CCCTCATCCCGCGA TCCG CCCCGGGA-GAAAG CCGCATGACGAGACG Pden_3395 540885 - 541514 + | putative transposase Pden_3396 542732 - 541860 - | LysR family transcriptional regulator Pden_3397 542800 - 543111 + | hypothetical protein Pden_3398 543498 - 543977 + | twin-arginine translocation pathway signal Pden_3399 543983 - 544609 + | ferric reductase domain-containing protein TERM 337 544689 - 544699 + T 72 -6.8 -4.25104 | opp_overlap 544681 544689 GTGCAAACGAGCCAA CCTC GAA GAGG TTTTCCTCACGGCCG Pden_3400 545640 - 544753 - | molybdenum cofactor synthesis domain-containing protein TERM 338 544989 - 545021 + g 82 -14.7 -3.53012 | opp_overlap 544979 GTGAAGTGGCGACAG GCAGGCGCCAGCCCG TCC CGGCCGGGGGCCTGC TTTCGAGCCGGGCGA TERM 339 545707 - 545693 - H 79 -10 -4.07568 | opp_overlap 545693 545691 CGTTCGGCGGGAAAA CGATCC ACT GGATCG TCTTCTTAACCACCT Pden_3401 545967 - 546131 + | transposase, IS4 Pden_3402 547575 - 546172 - | integral membrane sensor signal transduction histidine kinase Pden_3403 548272 - 547568 - | two component transcriptional regulator TERM 340 548785 - 548772 - g 76 -8.1 -4.25104 | CGTGGCCGAGGAAAA CGGCT GGGA AGCCG TCCTGCCCGTCCGCA Pden_3404 548443 - 549684 + | extracellular solute-binding protein TERM 341 549694 - 549725 + F 100 -19.4 -4.13995 | opp_overlap 549685 ATGTAAGGCCGACAG CCCCGCATCCGGCC GCAA GCCCGGGTGCGGGG TTTCCTTTCTGGGGG Pden_3405 549751 - 550623 + | binding-protein-dependent transport systems inner membrane component Pden_3406 550613 - 551482 + | binding-protein-dependent transport systems inner membrane component Pden_3407 551486 - 552592 + | ABC transporter related TERM 342 552891 - 552878 - f 76 -5.9 -4.4727 | opp_overlap 552881, overlap 552880 TCAAGACGGATAAAA CGCCC CGGC AGGCG GCCGAGTGTCTGGCG Pden_3408 552977 - 553237 + | hypothetical protein Pden_3409 553476 - 554615 + | creatinase TERM 343 554669 - 554640 - T 70 -14.2 -2.53213 | opp_overlap 554637 GAACCCCGGAACGGA GAGGCGGGCCCA TTTTGG CGGGCCCGCCGC GTCTTGGTCAGGCGG Pden_3410 555207 - 554677 - | hypothetical protein TERM 344 555068 - 555040 - G 71 -10.9 -3.54129 | GACACGCCCGGGAAA GGGGCAAGGATGG ATA CGGCCCTTGCCCC TTGCGGTGACGGAAC Pden_3411 556117 - 555233 - | hypothetical protein TERM 345 556049 - 556022 - G 70 -3.3 -4.40298 | overlap 556028 556029 ATGGAAACGAACAAA GGGAAAGCTGC GGGCCA GCAGCGTCTCC AGCCGCGGCTCGCAA Pden_3412 557041 - 556142 - | hypothetical protein Pden_3413 557493 - 557134 - | hypothetical protein TERM 346 557992 - 557963 - R 72 -2.8 -4.64676 | gap 1, overlap 557964 CCATCGGGAAGAAAA CCTTGCACCATCC ATCCG GGATGG-GCACGC CTGTCAGGCACAGGT Pden_3414 558896 - 558039 - | hypothetical protein TERM 347 558708 - 558680 - G 77 -11 -3.90318 | gap 1 CGATCACCGGATAAA GCGCCACCGCCGT GATC ACGTCGGTG-CGC AGCGCGGCGAAATCC Pden_3415 559011 - 560171 + | LysR family transcriptional regulator Pden_3416 561237 - 560290 - | acetamidase/formamidase TERM 348 560528 - 560547 + g 81 -7 -4.59773 | TCGCAGAGGATTTCG GGCGCCTC GGGG GCGGTGCC TTTTTCCAGGTGAAA Pden_3417 561575 - 561264 - | hypothetical protein Pden_3418 562298 - 561585 - | hypothetical protein TERM 349 561947 - 561963 + g 77 -3.5 -4.72272 | CCCCGTCGGTGACCA GCGCCGC CAC GCCCCGC TTTTTCATCCGCGCG TERM 350 562186 - 562215 + g 72 -3.5 -4.56597 | gap 1, opp_overlap 562158, overlap 562188 GGGTTCAGCGGCGCC GCGCC-GCGCAG CCAGACA TTGCGCAGGCCC TTTTTCAGCAGCACC Pden_3419 563098 - 562313 - | short-chain dehydrogenase/reductase SDR TERM 351 562398 - 562452 + g 73 -12.8 -3.53091 | gap 2, opp_overlap 562391, overlap 562381 GCGAGATAGGCCACC GTGTCGCCGTATTCCTCGGGCTGGCC ATAGC GGCC-GACCG-GGATCGCGGCGACGC TTTCGGCCGCGACCT Pden_3420 564366 - 563140 - | aminotransferase, class I and II Pden_3421 564814 - 564392 - | endoribonuclease L-PSP Pden_3422 566043 - 564811 - | aspartate aminotransferase TERM 352 565940 - 565919 - G 70 -8.7 -3.89346 | gap 1, opp_overlap 565929, overlap 565920 565923 TCGCCATGCGAGAAA TCC-ACCGGG CGG CCCGGCAGGA CGTCGCCGCGCAGCA TERM 353 565929 - 565987 + g 85 -18.9 -3.02511 | opp_overlap 565923 565920 565919, overlap 565941 565949 AGAAATCCACCGGGC GGCCCGGCAGGACGTCGCCGCGCA-GCAG CGC CTGGATGC-CGGCGGCGTTCTGGCGGACC TCTTGGCCGGGTGCG TERM 354 566183 - 566173 - H 89 -5.4 -5.12474 | opp_overlap 566167 566173, overlap 566163 CAGAAGATAGAAAAA CCAT CTT ATGG ATATTCGTTTTCTGG Pden_3423 566180 - 567067 + | LysR family transcriptional regulator Pden_3424 567997 - 567071 - | dihydrodipicolinate synthetase Pden_3425 568865 - 568008 - | aminotransferase, class IV Pden_3426 569647 - 568877 - | hypothetical protein Pden_3427 569820 - 570806 + | TRAP dicarboxylate transporter- DctP subunit Pden_3428 570897 - 571439 + | tripartite ATP-independent periplasmic transporter DctQ Pden_3429 571452 - 572753 + | TRAP dicarboxylate transporter, DctM subunit Pden_3430 572761 - 573534 + | allophanate hydrolase subunit 1 TERM 355 574237 - 574281 + G 81 -10.6 -4.30576 | gap 1, overlap 574237 574239 TCGTCTCGGACGGGA CC-GTGCCCGGCTCGATCCAG GTGC CGGGATCGGGCCAGCCGCTGG TTTTGCTGGTGGAAA TERM 356 574342 - 574297 - g 73 -12 -3.53012 | opp_overlap 574307 TTTTGCTGGTGGAAA GCC-AGACCACCGGCGGCTATC CCAA GATCGCCAC-GGTGATCTCGGC CGACCTGCCGCGCCT Pden_3431 573531 - 574595 + | urea amidolyase related protein Pden_3432 574592 - 575242 + | GntR family transcriptional regulator Pden_3433 575239 - 576189 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_3434 576186 - 577457 + | allantoate amidohydrolase Pden_3435 577454 - 578089 + | GntR family transcriptional regulator TERM 357 578147 - 578157 + G 72 -8.2 -4.07568 | overlap 578145 CGACCCCCTGCAAGG CGGC GAT GCCG TTTTCCCCCAGGCGG Pden_3436 578094 - 579287 + | peptidase M24 Pden_3437 579311 - 579997 + | fumarylacetoacetate (FAA) hydrolase Pden_3438 581424 - 580165 - | integral membrane sensor signal transduction histidine kinase Pden_3439 582140 - 581421 - | two component transcriptional regulator Pden_3440 582349 - 582957 + | hypothetical protein TERM 358 582962 - 582993 + F 81 -12.9 -3.61398 | opp_overlap 582940 582978 CGGCGCGCTGAGCCG GCCCGCGTCGGGC AAAGGC GCCCGACGCGCCC TTCTTCCAGACCGCA TERM 359 583261 - 583230 - g 74 -14.4 -3.28712 | overlap 583250 583251 CCGCCTTCGGCAGAA GCCCGGCGCGAC GGGCACAA GCCGCGCCAGGC GCCGGATCACCGCCC Pden_3441 583029 - 583505 + | hypothetical protein TERM 360 583674 - 583648 - g 78 -6.4 -4.57569 | overlap 583666 CGAGCCGGCGAAAAA GGCCCAGCCGTC GAA GAAGGTCGAGCC CGTGCAGAAGGCCCA Pden_3442 583517 - 583921 + | hypothetical protein TERM 361 583977 - 583939 - T 75 -12.3 -3.55444 | opp_overlap 583944, overlap 583944 GGCTCATGCGGCAAA GGGAAGGCGGCGACCGG GTGCT CCGGCCGCCGCCTTTTT CGTTCAGCGGCCCGA TERM 362 583944 - 583972 + T 100 -19.5 -4.8622 | opp_overlap 583939 583944 ATGCGGCAAAGGGAA GGCGGCGACCGGG TGC TCCGGCCGCCGCC TTTTTCGTTCAGCGG TERM 363 583972 - 583944 - T 100 -21 -3.27704 | opp_overlap 583944, overlap 583939 ATGCGGCAAAGGGAA GGCGGCGACCGG GTGCT CCGGCCGCCGCC TTTTTCGTTCAGCGG Pden_3443 584262 - 583981 - | hypothetical protein Pden_3444 586316 - 584310 - | ABC transporter related TERM 364 585520 - 585467 - G 74 -12.4 -3.64703 | gap 2 GGGCGCGCATGGAAA GCAGCGCCATGCGCAGCGCCTCGGCC AGCC GGCCCAG-CACCG-GCACGGCGGCGC GGGCCTGAACGCGGG Pden_3445 587514 - 586309 - | RND family efflux transporter MFP subunit TERM 365 587545 - 587573 + H 80 -12.4 -3.70902 | gap 1, opp_overlap 587544 TCTGGCGCGAATCAT CCCGG-CTCCGCC CGGC GGCGGAGGCCCGG TTTCGATATAGCCGC TERM 366 587691 - 587645 - g 75 -9.6 -3.99805 | opp_overlap 587655 587656, overlap 587655 CCCGAAAAACCGAAA TTGTAACAAAGCGTTTCTCGCC GCC GGCCAGAAACAATTCCTTACAA ATATATGCGTGCGCC Pden_3446 587614 - 588063 + | hypothetical protein TERM 367 588373 - 588396 + G 82 -6.6 -4.74103 | gap 1, overlap 588374 TCTCCATCGGCTTGC CCGGCT-GGGC ATT GCCCTGGCCGC TTTTTCCCTTGCGGG Pden_3447 588344 - 589516 + | RND family efflux transporter MFP subunit TERM 368 591091 - 591103 + G 72 -6.2 -4.36914 | overlap 591087 591086 591089 591088 CGAACGGCTATGCCG GCGC GGTCG GCGC TTTTGTGCGCCGGCC Pden_3448 589521 - 592625 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein Pden_3449 592622 - 593998 + | RND efflux system outer membrane lipoprotein ampC 595274 - 594069 - | beta-lactamase Pden_3451 595356 - 596231 + | LysR family transcriptional regulator Pden_3452 596329 - 596745 + | hypothetical protein Pden_3453 596845 - 597135 + | hypothetical protein Pden_3454 598448 - 597192 - | LysR family transcriptional regulator TERM 369 598406 - 598443 + g 82 -15.4 -3.39895 | overlap 598407 CCGGATGGCGGGTGC AGCGGCCGGGCGCAGC GATGCA GCGGCGCCCGGCCGGG TTCATTCGTCGCCGG TERM 370 598407 - 598442 + g 79 -18.9 -2.63723 | overlap 598406 CGGATGGCGGGTGCA GCGGCCGGGCGCAGC GATGCA GCGGCGCCCGGCCGG GTTCATTCGTCGCCG Pden_3455 599119 - 598445 - | hypothetical protein TERM 371 598679 - 598642 - G 82 -20.5 -2.52464 | TGCCCGCCGAATGGA CCGGGCCGGCCTCGCCG CCGG CGGCAAGGCCGGCGCGC ATCGCGGCGATCAGC Pden_3456 599540 - 599124 - | endoribonuclease L-PSP Pden_3457 600870 - 599599 - | FAD dependent oxidoreductase TERM 372 599883 - 599845 - G 83 -15.3 -3.62864 | gap 1, overlap 599835 GAAATCCACTGCAAA GCCGGTGGCCCAGATCAC CGTG GCGATCCCGGCC-CCGGC AAGGTTCAGCTCCAG Pden_3458 601117 - 602274 + | acetylornithine deacetylase Pden_3459 602523 - 603659 + | spermidine/putrescine ABC transporter ATPase subunit Pden_3460 603742 - 604812 + | ABC polyamine/opine transporter, periplasmic substrate-binding protein TERM 373 604904 - 604878 - f 71 -12.9 -2.98381 | overlap 604875 CAATCCACGAAACGA GCCGCGGTGCC GCCTT GGCGCCGCAGC CTTCGAACCGAACCG TERM 374 605053 - 605068 + G 79 -4.6 -4.7871 | overlap 605008 605054 GCGGAGTTCGCGTCG TGCGCG TCGT CGTGCG TTTTTCCTGGTGCTT Pden_3461 604937 - 606229 + | binding-protein-dependent transport systems inner membrane component TERM 375 606536 - 606552 + G 79 -3 -4.83615 | gap 1, opp_overlap 606536, overlap 606538 606539 TGAATGCGGCGAAAA GCTCGAT CATC ATCG-GC TTTTTCTCGACCATC TERM 376 606678 - 606696 + G 72 -8.8 -4.05004 | GATCGTGCCGATCAT CATCACCG CGA CGGGGATG TTCTTCTTCTACTCG Pden_3462 606235 - 607188 + | binding-protein-dependent transport systems inner membrane component Pden_3463 607236 - 608441 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 377 608495 - 608507 + T 75 -9.1 -3.98282 | opp_overlap 608460, overlap 608466 CGTCCGCGACAGGGC GTGCG GGC CGCAC TTTCATTCGTCTGCC Pden_3464 609030 - 608674 - | ferredoxin TERM 378 609039 - 609088 + r 72 -11.1 -3.53012 | overlap 609040 609078 CGCCCATCCGCGCCC CGATTGCAGCCGCGGCGGGCGGC ACGG GCCACCCGCCACGGCCTCGACCA TTTCCGGCGACGGCC TERM 379 609040 - 609087 + r 75 -14.6 -2.71712 | overlap 609039 609078 GCCCATCCGCGCCCC GATTGCAGCCGCGGCGGGCGGC ACGG GCCACCCGCCACGGCCTCGACC ATTTCCGGCGACGGC Pden_3465 610258 - 609104 - | Rieske (2Fe-2S) domain-containing protein Pden_3466 610387 - 611307 + | LysR family transcriptional regulator Pden_3467 612549 - 611548 - | proline racemase Pden_3468 613653 - 612943 - | CRP/FNR family transcriptional regulator TERM 380 613712 - 613679 - H 70 -7.3 -3.96892 | overlap 613708 613709 AACTTGTATCATAAA GGCCGTCCTCTGTGC GCCC GCGCACAGAACTGCC GTGCCGGTTGCGGCA TERM 381 613712 - 613729 + H 76 -9.1 -4.10855 | opp_overlap 613708 613709 CGCGCACAGAACTGC CGTGCCG GTTG CGGCATG TTTTGGAAAAATTTT Pden_3469 613765 - 614847 + | hypothetical protein TERM 382 614925 - 614951 + T 100 -21 -4.09923 | opp_overlap 614925 TCTCTCTGAAAGAAA GGGTCAGGATCG TGA CGATCCTGACCC TTGTTTCCTTGGCTT TERM 383 614951 - 614925 - T 100 -21 -4.41348 | opp_overlap 614925 TCTCTCTGAAAGAAA GGGTCAGGATCG TGA CGATCCTGACCC TTGTTTCCTTGGCTT Pden_3470 615549 - 615004 - | hypothetical protein TERM 384 615555 - 615572 + r 75 -4.1 -4.62069 | gap 1, overlap 615557 615558 TCTCCGACATCGCAA TCTCCGCC ATG GGTGG-GA TTTTTCGGGTCCGGG Pden_3471 616954 - 615599 - | TfuA domain-containing protein Pden_3472 618120 - 616951 - | hypothetical protein TERM 385 617701 - 617677 - G 83 -12.7 -4.03234 | opp_overlap 617676, overlap 617680 GCTGCTGCAGAGAAA GCAGCCGCTGC CGG GCGGCGGCGGC AGGGTATAGTTCGCG TERM 386 619448 - 619504 + G 70 -12.2 -3.29096 | gap 1, opp_overlap 619466, overlap 619449 GTGCCATGGCATCGT CGCCGACCTGATCACCAACCTGTGCCG GTTC CGGCACCTGCTGGTGATCGCG-CGGCA TTCATCGTTCCTGGC Pden_3473 618747 - 620537 + | adenylyl cyclase class-3/4/guanylyl cyclase TERM 387 622168 - 622126 - g 71 -9.6 -3.72324 | overlap 622128 CATGCTGACCAACAA CACCAAGCGCGAAGAGGCGA ACG CCGCCAACCCGCGCGTGGAG AACGCCTTCGGCCAT TERM 388 622439 - 622460 + G 70 -12.9 -3.32698 | overlap 622438 GTGGATGTCGAGGGC GCCGCGCGG GGCA CCTCGCGGC TGTTCTATCGGGTGC Pden_3474 620705 - 622696 + | hypothetical protein TERM 389 622717 - 622736 + T 85 -12.1 -4.19238 | opp_overlap 622717 CGCCGGATCGGGAAA GGGGGCG AAAGAC CGCCCCC TTTTCCGCTTGCCGG TERM 390 622736 - 622717 - T 81 -12.8 -3.57144 | opp_overlap 622717 CGCCGGATCGGGAAA GGGGGCGA AAGA CCGCCCCC TTTTCCGCTTGCCGG Pden_3475 623484 - 622786 - | ThiJ/PfpI domain-containing protein TERM 391 623012 - 622996 - G 72 -6.5 -4.25104 | overlap 622997 CTCGGTCCAGGAAAA GCCGG TCACCTG CCGGC CGGCAACCAGAAGCG Pden_3476 624766 - 623489 - | NADH:flavin oxidoreductase/NADH oxidase TERM 392 623656 - 623669 + g 72 -3.7 -4.56597 | overlap 623650 CCATGGTGGCGAGGC CCGAG ATGG CCCGG TTTTTCCAGCGCACC TERM 393 624963 - 624905 - g 72 -5.7 -4.25104 | overlap 624906 CCGCTTCTATGAAAA GCGCGGGATCATCGCCCCGGCCGTGCG TGGGC CGAACGGCTATCGCGACTATCCCGAGG AGCTGATCGCCATCC Pden_3477 624840 - 625202 + | MerR family transcriptional regulator TERM 394 625284 - 625250 - T 81 -12.1 -3.91716 | gap 1 TGATGGCCGAAAGAA CCGGCGCATCG-CGGC TGCC GCCGGCTACGCACCGG ACAGACCGCCAAATC Pden_3479 626646 - 625891 - | regulatory proteins, IclR TERM 395 626109 - 626141 + g 73 -7.5 -4.11394 | CGCGGATGCCGTCGA GCTGCGCCGCCAGGG CCG TCCTGGAGGTGACGC TTTTCGGCGTGACCT Pden_3480 626754 - 627746 + | TRAP dicarboxylate transporter, DctP subunit Pden_3481 627805 - 628311 + | tripartite ATP-independent periplasmic transporter DctQ Pden_3482 628308 - 629591 + | TRAP dicarboxylate transporter, DctM subunit TERM 396 630539 - 630526 - g 75 -9.5 -4.08216 | overlap 630527 CTATTGCGCCCAAAA GGGCG CGAG CGCCC GCGATCTGGTCGGGC Pden_3483 629588 - 630667 + | dihydroorotate dehydrogenase Pden_3484 630664 - 631563 + | hypothetical protein Pden_3485 631560 - 632309 + | HpcH/HpaI aldolase TERM 397 632665 - 632703 + G 74 -14.5 -3.01712 | TGCCGCCGGGCGACA GCCGGGTGACGCTGCCC GAAGG GGGCAGGGTGGTCCGGC TGTTCACCGCCGCCG Pden_3486 632340 - 633242 + | hypothetical protein TERM 398 633445 - 633476 + T 83 -15 -3.18366 | overlap 633444 633443 633446 CTCGGGCTAATCCTC TCCGCGCGCTCCGG TCCG CAGGGGCGCGCGGC TGTATTCGTTGCCGG TERM 399 633446 - 633475 + T 86 -18.5 -2.50699 | overlap 633445 633444 633443 TCGGGCTAATCCTCT CCGCGCGCTCCGG TCCG CAGGGGCGCGCGG CTGTATTCGTTGCCG Pden_3487 634008 - 633436 - | MarR family transcriptional regulator TERM 400 635032 - 635014 - g 74 -11 -3.72576 | overlap 634988 GGTCCGTCTATGAAA TCGGCCAG CGG CTGACCGA CCGTTTCGACGACCT TERM 401 635810 - 635798 - g 72 -6.2 -4.30576 | GCGCGACTATGAAAA GGCG TTCTG CGCC GATCCGGCCGCGGGC Pden_3488 634065 - 635972 + | phenol 2-monooxygenase Pden_3489 636961 - 635969 - | LysR family transcriptional regulator Pden_3490 637053 - 638222 + | 4-hydroxybenzoate 3-monooxygenase Pden_3491 638222 - 639010 + | 3-oxoadipate enol-lactonase Pden_3492 639003 - 639434 + | 4-carboxymuconolactone decarboxylase Pden_3493 639431 - 640153 + | protocatechuate 3,4-dioxygenase, beta subunit Pden_3494 640153 - 640863 + | protocatechuate 3,4-dioxygenase, alpha subunit TERM 402 641255 - 641230 - g 72 -5.9 -4.25104 | CCGGGTCTATGAAAA CCCGCCGGACC TGGT GGACTGGCTGG CCGCCGAGATGCTGA Pden_3495 640856 - 641701 + | hypothetical protein TERM 403 642979 - 642954 - g 75 -9.7 -4.07568 | gap 1, overlap 642978 GCTGCGGCCCGAAAA CCTGACC-GGCG CCG CGCCAGACCAGG CGCGCGCCGCACGAC Pden_3496 641701 - 643002 + | fumarate lyase Pden_3497 643024 - 644049 + | TRAP dicarboxylate transporter- DctP subunit Pden_3498 644067 - 644588 + | hypothetical protein Pden_3499 644585 - 645904 + | TRAP dicarboxylate transporter, DctM subunit Pden_3500 646842 - 645946 - | LysR family transcriptional regulator TERM 404 647074 - 647029 - g 74 -11.9 -3.78934 | gap 1, overlap 647071 TGCCCGGCAGAACAA CGCCTTCTTCACCGATACGCTG GGC CTGCGC-CGGGTGAAGAAGACG GTGAACTTCGATGAG TERM 405 647215 - 647238 + G 73 -10.2 -3.85698 | GGGCGAGACCCAGTT CTCGGTGCCC AAGG GGGCGCTGGG TTTCTGGCAGGACCG Pden_3501 646964 - 647896 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 406 648120 - 648133 + G 71 -2.3 -4.65895 | opp_overlap 648121, overlap 648121 GCGACGTCCTGGAAT ACGGT GCCA ACCGC TTTTTCCGTCGCACC Pden_3502 647954 - 648583 + | RC150 TERM 407 648812 - 648778 - g 84 -7.3 -4.72272 | gap 1 TGCCTGCATGAAAAA TCCTTCGCGCT-TCAT GCCG ATGACAAGGCGAAGGA GCATGATGCCGCCTG Pden_3503 648580 - 648828 + | hypothetical protein Pden_3504 648874 - 649563 + | isochorismatase hydrolase TERM 408 649626 - 649639 + F 75 -4.5 -4.63527 | GAGCCCCATGCGGAA CTGGT CGTC ACCGG TTTTTCCGATGATGC Pden_3505 649884 - 650186 + | hypothetical protein Pden_3506 650236 - 650454 + | DoxX Pden_3507 650698 - 652557 + | amidohydrolase 3 TERM 409 652605 - 652569 - f 74 -15.2 -2.62983 | gap 1, opp_overlap 652561 CTGAGCCGGACAGGA TCGTAG-CGGCGGGATG CGCG CATCCCGCCGTCCACGG ATACCGATGCCTGGT Pden_3508 652649 - 654229 + | protein of unknown function DUF894, DitE Pden_3509 654270 - 654662 + | DoxX family protein Pden_3510 654707 - 655651 + | pirin domain-containing protein TERM 410 655736 - 655710 - T 72 -6.4 -4.30978 | overlap 655712 GGGAACGTAGCAAAA GGGGAGAGCGCA GCC TGCTCCCCGCCC GAACGACATGGGCGG Pden_3511 656942 - 655815 - | hypothetical protein TERM 411 655942 - 655928 - G 71 -10 -3.7282 | opp_overlap 655927 655928, overlap 655940 TCACGGCACCAAGAA GCGTGT CGA ACACGC GTTCTGGCGCGATGT TERM 412 656144 - 656123 - G 72 -5.7 -4.25104 | GCTCTTGCAGCAAAA GGGTCCAGG CCAG CATGGCCCC AAGGACCGTCCCGGC TERM 413 656537 - 656502 - G 71 -11.8 -3.53811 | gap 1, overlap 656508 656510 GGCACCGGCCGCAAA GACGAAGATCAGCGCGC CGG GCGCGCCGAACC-CGCC GGTCGTGCAGACGAA TERM 414 656532 - 656508 - G 76 -13.5 -3.45571 | overlap 656502 656510 GGCCGCAAAGACGAA GATCAGCGCGC CGG GCGCGCCGAAC CCGCCGGTCGTGCAG TERM 415 656530 - 656510 - G 79 -14.7 -3.29837 | overlap 656508 656502 CCGCAAAGACGAAGA TCAGCGCGC CGG GCGCGCCGA ACCCGCCGGTCGTGC Pden_3512 657409 - 656939 - | MarR family transcriptional regulator Pden_3513 657528 - 658811 + | LysR family transcriptional regulator Pden_3514 658965 - 660347 + | allantoinase Pden_3515 660347 - 661585 + | allantoate amidohydrolase TERM 416 661808 - 661842 + G 75 -10.6 -4.09685 | GACAACGCCATGGGA GATGCGCGGCGTGGAC TAC GTCAAGGCCGTGCAGC TTTTGCAGGATGCGC Pden_3516 661587 - 662678 + | hypothetical protein TERM 417 663145 - 663175 + G 72 -13.2 -3.21099 | opp_overlap 663127 663126, overlap 663134 CATGCGCATCGCCGA GCGTCGCTTCGGCG GCA CGCTGGAGGGGCGC TTCGTCCTGACGGCG Pden_3517 662681 - 664339 + | urocanate hydratase Pden_3518 664452 - 665795 + | major facilitator transporter Pden_3519 665822 - 667486 + | phenylalanine/histidine ammonia-lyase Pden_3520 667754 - 668722 + | helix-turn-helix domain-containing protein Pden_3521 670866 - 668767 - | TonB-dependent siderophore receptor TERM 418 670444 - 670417 - G 71 -9.8 -3.70902 | gap 1, opp_overlap 670417 CCGCTCATAGGCAAA GGCGTCCTCGCGG ATG CCGCC-GAACGCC TTCTGCATCGGCAGC TERM 419 671006 - 671019 + H 78 -3.9 -4.84359 | GGCCGCTGCTGTATT GAATA ATCC TATTC TTTTTGTCGGAATCC Pden_3522 671140 - 672141 + | periplasmic binding protein TERM 420 672335 - 672277 - g 86 -21 -2.78384 | gap 2, opp_overlap 672320 672321, overlap 672310 TCGGCTGGGACGACA TCGCCGCCGCGCTGGCCGGCCGGGCCGA GACCA TCGGCCAGGCCG-CCAGCGCCGCA-CGG CTGCCGCGCACGGCG TERM 421 672320 - 672356 + G 77 -10.8 -3.85698 | gap 2, opp_overlap 672277 672310, overlap 672321 672338 GACCATCGGCCAGGC CGCCAGCGCC--GCACGG CTG CCGCGCACGGCGCTGGCC TTTCTGGCCGGAGCG Pden_3523 672138 - 673163 + | transport system permease protein Pden_3524 673166 - 674206 + | transport system permease protein Pden_3525 674203 - 675066 + | ABC transporter related Pden_3526 676580 - 675279 - | hypothetical protein TERM 422 675777 - 675731 - G 78 -8.5 -4.25104 | opp_overlap 675713 675725, overlap 675765 675767 GCGTGGCCAGGAAAA GGGCCCGCGCCTCTTCCCTCG TGTCC CCCAGATAGAGGCTCAGGCCC GGCAGCAGCCGCACG Pden_3527 678743 - 676659 - | TonB-dependent receptor Pden_3528 678951 - 679748 + | regulatory proteins, IclR Pden_3529 680531 - 679749 - | ABC transporter related Pden_3530 680760 - 681563 + | siderophore-interacting protein TERM 423 681747 - 681803 + G 78 -5.7 -4.57569 | gap 3 CTGCTGGCCATCGAC GCGCCGGTCG-CGG-CGACGGCCGCGGC GCTG GTCG-GGCCGCTGACCGACGACAAGGGC TTTTTCACGCAATGG TERM 424 682184 - 682223 + G 75 -8.4 -4.18018 | gap 1 CTATGCCGTCGGCAA GCCCAGCAGCCCGCAGGCC AAG GTCCTGGCGGC-GCTTGGC TTTTCGGTCAGGGGC Pden_3531 681573 - 682511 + | iron-enterobactin transporter periplasmic binding protein Pden_3532 682508 - 683215 + | transport system permease protein Pden_3533 683199 - 683549 + | transport system permease protein Pden_3534 683546 - 684598 + | transport system permease protein TERM 425 684669 - 684622 - T 100 -21.5 -3.01791 | gap 3, opp_overlap 684623 684631 AGGCGGTCGGCAAGA TCGCCGGATCGCGGGCCCC--GCC TTT GGCATGGGGCCCGCGATCCGG-AA TGTGCTTCAGGCCGC TERM 426 684623 - 684669 + T 100 -20.9 -2.90075 | gap 2, opp_overlap 684622, overlap 684631 GGCGGTCGGCAAGAT CGCCGGATCGCGGGCCCC--GCC TTT GGCATGGGGCCCGCGATCCGGAA TGTGCTTCAGGCCGC Pden_3535 685290 - 684676 - | glutathione S-transferase domain-containing protein TERM 427 685313 - 685325 + r 79 -10.5 -4.18161 | TCCTCCGGTTGCGTT GGCCG CTT CGGCC TTTTGCGGGTTTGTC Pden_3536 686033 - 685290 - | GntR family transcriptional regulator TERM 428 686087 - 686073 - H 72 -2.8 -4.69027 | opp_overlap 686073 686078, overlap 686075 AAATGTATCCAAAAA CTGTAT CTG ATGCAG ATTCTCTTTGCAATA Pden_3537 686155 - 686913 + | short-chain dehydrogenase/reductase SDR TERM 429 687334 - 687346 + G 76 -2.6 -4.72986 | GCCGGCCAAGTTCCT GCTG CCCTT CGGC TTTTTCCTGGCGGTC Pden_3538 686930 - 687436 + | TRAP dicarboxylate family transporter DctQ subunit Pden_3539 687446 - 688756 + | TRAP dicarboxylate transporter, DctM subunit TERM 430 689223 - 689199 - g 70 -3.4 -4.45544 | overlap 689201 CCTGACCAATGAAAA GATCCGCGCC GAATG GGCAAGGAAC GGCGGCATTTTCCTG Pden_3540 688822 - 689940 + | TRAP dicarboxylate transporter- DctP subunit Pden_3541 690013 - 690750 + | short-chain dehydrogenase/reductase SDR Pden_3542 690766 - 691551 + | short-chain dehydrogenase/reductase SDR TERM 431 692482 - 692497 + G 70 -8.2 -3.85698 | overlap 692443 GATCGCCGCGGCCGA GGCCGT CGGA GCGGCC TTTGTCGACACCAAC TERM 432 692566 - 692585 + G 76 -7.1 -4.2558 | CAATGCCGACGGATC GGTGCGG CCCTTC CCGCATC TTTTCCTGGACCGTG Pden_3543 691538 - 693247 + | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein TERM 433 693639 - 693678 + G 77 -15 -3.14564 | gap 1, overlap 693650 CATGACCTTTGCCCG CACGCCCGAAGGC-TGGCG CAT CGCCATGCTTTCGGCCGAG TTCCTGCCGCGCTGA Pden_3544 693244 - 693693 + | hypothetical protein TERM 434 694324 - 694354 + G 70 -14.7 -2.71011 | gap 1, opp_overlap 694341 694342 CCAGGCCATCGCCAC CGCGACCAGGCCCG AAAC CGGGCATGG-CGCG TCGTTCCCCCGCCCT Pden_3545 693902 - 694393 + | MarR family transcriptional regulator Pden_3546 694821 - 694390 - | MarR family transcriptional regulator TERM 435 694770 - 694743 - G 82 -14.8 -3.53012 | overlap 694753 CTTCGGCCTCGTAAA GCGCGGCAAAGC GGCG GCTCAGCCGCGC GGCCGCCACGGACAG TERM 436 695554 - 695605 + G 70 -12.9 -3.25942 | opp_overlap 695545 GGAAATCGCCATCCT GCCGCGCGGCCTGGTCTACC-GCGT CGAG GTGCTGGAGGGCCCGGCC-CGCGGC TTCGTCTGCGAGAAT TERM 437 695890 - 695947 + G 74 -13.3 -3.27923 | CGACCATCCCGACCC GTCGATCTTCACCGTGCTGACCGCGCC CTCG GGCCAGGAGGGCACGGCGAATATCGAC TTCGTGCTGTTCCGC Pden_3547 694964 - 696325 + | homogentisate 1,2-dioxygenase Pden_3548 696400 - 697605 + | fumarylacetoacetase TERM 438 697886 - 697831 - g 74 -11.7 -3.74519 | gap 3 AATACCTCGAGGAAA CCCGGC-CGCAGCCGGCGCTGCTGC-CC GAA GGTGCGGCGGCGCGGGC-GCATGCCCGG GCGTTGGCGCTGGCG Pden_3549 697602 - 698237 + | maleylacetoacetate isomerase TERM 439 698455 - 698471 + F 74 -11.5 -3.60098 | opp_overlap 698433 TCGGCATGGTTCCCA GCTGCGG GTG CCGCGGC TTTCCCGTCCGCCAT Pden_3550 698668 - 699378 + | acylneuraminate cytidylyltransferase Pden_3551 699375 - 700421 + | flagellin modification protein FlmD Pden_3552 700418 - 701539 + | ATP-dependent carboxylate-amine ligase domain-containing protein Pden_3553 701536 - 702444 + | NAD-dependent epimerase/dehydratase Pden_3554 704322 - 702466 - | hypothetical protein Pden_3555 707368 - 704351 - | hypothetical protein TERM 440 707303 - 707276 - G 71 -9.8 -3.75105 | gap 1, opp_overlap 707291 CCAAGCCATGAAGAA CCGCGCCA-ACCG GAA CGGCGTGCCGCGG AACAGCCGGCGTGCC Pden_3556 708448 - 707372 - | N-acylneuraminate-9-phosphate synthase TERM 441 708574 - 708538 - R 89 -10 -4.53303 | opp_overlap 708559, overlap 708542 GAGGCTTACAGAAAA CGGACCCGGGGAAGAA GCAAG CCCTCCCCCGGGAGCG GTGTTCAACAGAGCA Pden_3557 709733 - 708579 - | DegT/DnrJ/EryC1/StrS aminotransferase Pden_3558 710731 - 709730 - | polysaccharide biosynthesis protein CapD TERM 442 711559 - 711583 + G 87 -8.5 -4.72272 | CGACCCGATCCACCT GCTGGTAATCG GCG CGGTGACCGGC TTTTTCGTCAACGGC Pden_3560 711428 - 711823 + | putative transport transmembrane protein Pden_3561 713298 - 712270 - | transposase IS116/IS110/IS902 family protein TERM 443 712684 - 712700 + g 75 -6.5 -4.39426 | overlap 712685 TTCTTCGCCGAATTG GGCTTCG CGA CGAAGCG TTTTCTCGAGGTCTG Pden_3562 713407 - 713730 + | transposase IS3/IS911 family protein Pden_3564 714938 - 715459 + | hypothetical protein Pden_3565 715570 - 715953 + | hypothetical protein Pden_3566 716125 - 716892 + | two component transcriptional regulator Pden_3567 717983 - 716868 - | response regulator receiver sensor signal transduction histidine kinase Pden_3568 720604 - 717980 - | integral membrane sensor signal transduction histidine kinase Pden_3569 720832 - 722058 + | formamidase TERM 444 722117 - 722129 + F 75 -3.3 -4.82162 | CACAGGAGGAGAGGT CCATG CTG CTTGG TTTTCTATTGTTCTA Pden_3570 722119 - 722631 + | AmiS/UreI transporter Pden_3571 722641 - 722937 + | hypothetical protein Pden_3572 723860 - 723093 - | short-chain dehydrogenase/reductase SDR Pden_3573 724570 - 723857 - | GntR family transcriptional regulator Pden_3574 724667 - 725908 + | hypothetical protein TERM 445 726148 - 726160 + G 78 -6.2 -4.57073 | GGCGCTGGTGCTGAC GCCG CATAT CGGC TTTTTCGGGGCGCTG Pden_3575 725984 - 726859 + | inner-membrane translocator Pden_3576 726867 - 729383 + | ABC transporter related Pden_3577 729392 - 730327 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding Pden_3578 730346 - 731278 + | hypothetical protein Pden_3579 731289 - 732599 + | histidinol dehydrogenase Pden_3580 732596 - 733354 + | short-chain dehydrogenase/reductase SDR Pden_3581 733827 - 733447 - | hypothetical protein Pden_3582 734776 - 733985 - | response regulator receiver protein TERM 446 734894 - 734873 - g 79 -5 -4.71061 | overlap 734874 ATTCACACGGAAAAA TGCCGGGC GCGCAA GCCCGACC AAGGAGGAAGACGTG Pden_3583 734835 - 735674 + | short-chain dehydrogenase/reductase SDR TERM 447 735784 - 735828 + G 74 -12.8 -3.56092 | opp_overlap 735782, overlap 735785 GGGTCGGCAACCAGT CCTGCGTCCGCGC-GGCGCGCG CCG CGCCCGCCAGCGAGGACG-AGC TTTGCGCCCTGATAG TERM 448 735785 - 735827 + G 74 -16.3 -2.73441 | opp_overlap 735782, overlap 735784 GGTCGGCAACCAGTC CTGCGTCCGCGC-GGCGCGCG CCG CGCCCGCCAGCGAGGACG-AG CTTTGCGCCCTGATA Pden_3584 735702 - 736973 + | FAD-linked oxidoreductase Pden_3585 737038 - 738234 + | ethanolamine utilisation protein, EutH TERM 449 738256 - 738314 + T 72 -2.9 -4.62069 | opp_overlap 738246 CCGAACCCTTCCCGG CGGCGGGCGCAATCACGGC-GGGCGCC GACGAAG GGAGCCCAGCAGTGCC-GCATTCGCCG TTTTTCCGGTGCGGA Pden_3586 739511 - 738420 - | transglutaminase domain-containing protein TERM 450 738991 - 738961 - G 70 -12.7 -3.25942 | gap 1, opp_overlap 738960 738959 AGGTTGCGATAGCAA TGCGCGACGATCCA GGCA TAGATCG-CGCGCA CCTTGTCCACATCCG Pden_3587 740423 - 739698 - | hypothetical protein Pden_3588 741883 - 740435 - | amidohydrolase Pden_3589 742203 - 741907 - | hypothetical protein TERM 451 742376 - 742409 + r 74 -11.2 -3.62572 | gap 2, opp_overlap 742376 GAGAGACATGAAAAA GGCGCTAAGG--GGTT GTTG AACCTGCCTTAGCGCC TTTGGAATCATGGTG TERM 452 742409 - 742376 - R 100 -11.2 -4.86133 | gap 2, opp_overlap 742376 GAGAGACATGAAAAA GGCGCTAAGG--GGTT GTTG AACCTGCCTTAGCGCC TTTGGAATCATGGTG Pden_3590 742631 - 742380 - | hypothetical protein Pden_3591 742686 - 742979 + | addiction module antitoxin Pden_3592 742972 - 743247 + | addiction module antitoxin Pden_3593 744669 - 743455 - | transposase IS66 TERM 453 745011 - 745029 + r 71 -9.6 -3.7511 | overlap 745003 745022 GAAGTTTATCCCACG GGATTCCT TGT GGGAATCC TTCTCTTGTAGGGCG Pden_3595 745397 - 745050 - | IS66 Orf2 family protein TERM 454 745595 - 745556 - H 73 -9.1 -3.87815 | opp_overlap 745555 CTCTACCGGCAGAAA GCGCGCCGCCTCTGCTG GGGGCG CAGCCGAGGCGGGGTCC GGCGCATAACGGGGA Pden_3596 745691 - 747589 + | phage tape measure protein Pden_3597 747589 - 748251 + | hypothetical protein Pden_3598 748251 - 748835 + | hypothetical protein Pden_3599 749105 - 748845 - | hypothetical protein TERM 455 749178 - 749195 + H 75 -3.3 -4.7373 | opp_overlap 749171, overlap 749179 ACAGATGAGAACTCG GCTCCAC CTCG GTGGGGA TTTTTCATGAGGTCC Pden_3600 749213 - 749608 + | hypothetical protein Pden_3601 749608 - 751692 + | fibronectin, type III domain-containing protein Pden_3602 751752 - 753809 + | hypothetical protein TERM 456 753836 - 753854 + F 100 -13.8 -5.09225 | opp_overlap 753814 ATCAGACTATGACCG GGCCCGCT TTT GGCGGGCC TTTTTTGCATGGAGT Pden_3603 753875 - 754198 + | hypothetical protein Pden_3604 754198 - 757080 + | hypothetical protein Pden_3605 757105 - 757386 + | hypothetical protein TERM 457 758315 - 758351 + G 73 -7.9 -4.13945 | gap 1, opp_overlap 758308 GCCACCAAGCCTGCG GCGCCGTCAGCG-GGC ATCATC GCCGCGCTTCTGGCGC TTTTCAAGTCCCCGT Pden_3606 757589 - 758383 + | peptidoglycan binding domain-containing protein TERM 458 758938 - 758921 - T 100 -10.5 -4.96848 | opp_overlap 758921 758920, overlap 758935 CCCTGCATACAAAAA CCGGCCC CGAA GGACCGG CTTTCGTGGCGGAAA Pden_3607 759303 - 759034 - | hypothetical protein Pden_3608 759689 - 759414 - | hypothetical protein TERM 459 760173 - 760133 - R 81 -7.3 -4.57073 | overlap 760136 GATTCGGGTGAAAAA TCACGCCTCGTCGGCGGCG CGG CGGCGCAGGCGCAGGGTGA TGACCTCGCCGCCGG TERM 460 760488 - 760467 - R 100 -18.7 -5.4505 | TCGGTCAAGAAAAAA CCGCGCGGG ATGG CCCGCGCGG TTCCGGTGTCAGTGG Pden_3609 762914 - 760497 - | ATP-dependent protease La TERM 461 761414 - 761427 + g 81 -9.5 -4.3129 | overlap 761412 GCAGCAGGTGCTGGC GCGCG ATCT CGCGC TTTTCGTCCTCGGTA TERM 462 763082 - 763058 - R 81 -11.4 -4.18018 | gap 1, opp_overlap 763051, overlap 763060 CTGGCGGATGGAAAA GAGCCCCCGGC GCGA ACCGGGGGC-C TTGGCAGTCGTCTAA TERM 463 763081 - 763060 - R 89 -15.1 -3.69216 | opp_overlap 763051, overlap 763058 GGCGGATGGAAAAGA GCCCCCGGC GCGA ACCGGGGGC CTTGGCAGTCGTCTA Pden_3610 763316 - 763116 - | CsbD family protein TERM 464 764926 - 764970 + G 71 -10.6 -3.74693 | gap 1, overlap 764927 CTACCTCTATTTCAA TGCCGGCTGGTTCTTCGGCGC CGAT GCGCAGGAGT-TCGGCCGGCG TTTCCTGGACTGGAC Pden_3611 764201 - 765376 + | hypothetical protein TERM 465 765381 - 765419 + T 78 -8.1 -4.4078 | overlap 765383 765385 765385 GGCTGCGCTGACGGC GGCTG-CGGGCCGGGGATG CGC CATCC-CGGCCCGGCTGTG TTTTCCTTAGCCCGC TERM 466 765383 - 765417 + T 84 -12.9 -3.8125 | overlap 765381 765385 765385 CTGCGCTGACGGCGG CTG-CGGGCCGGGGATG CGC CATCC-CGGCCCGGCTG TGTTTTCCTTAGCCC TERM 467 765385 - 765415 + T 81 -14.1 -3.48718 | overlap 765383 765381 765385 GCGCTGACGGCGGCT G-CGGGCCGGGGATG CGC CATCC-CGGCCCGGC TGTGTTTTCCTTAGC TERM 468 765385 - 765414 + T 71 -14.3 -2.68508 | gap 1, overlap 765385 765383 765381 GCGCTGACGGCGGCT GCGGGCCGGGGATG CGC CATCC-CGGCCCGG CTGTGTTTTCCTTAG ileS 768389 - 765426 - | isoleucyl-tRNA synthetase Pden_3613 768541 - 769713 + | monooxygenase, FAD-binding Pden_3614 769733 - 770155 + | hypothetical protein Pden_3615 770204 - 770527 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_3616 771156 - 770524 - | hypothetical protein TERM 469 770971 - 770955 - G 76 -7.9 -4.30576 | overlap 770957 CGGTCAGCAGCAAAA GCTCGGG CCG CCCGACC CAGAAGACCGGCGCC Pden_3617 771620 - 771153 - | ribonuclease H TERM 470 771325 - 771345 + g 73 -10.3 -3.9461 | overlap 771326 TTCTTCACCGGCTTG CGGTCGGCG GTG CGCCAGCCG TTCTTCTTCCAGCCA Pden_3618 772222 - 771617 - | glutathione S-transferase domain-containing protein Pden_3619 773266 - 772316 - | hydroxymethylbutenyl pyrophosphate reductase Pden_3620 773869 - 773306 - | adenine phosphoribosyltransferase Pden_3621 774531 - 773869 - | hypothetical protein Pden_3622 774687 - 775247 + | GCN5-related N-acetyltransferase Pden_3623 775804 - 775235 - | vertebrate C-lysozyme inhibitor TERM 471 775826 - 775844 + H 79 -11.6 -3.8579 | CTTCCTTGTCCTTGT CCCGCCGC CAT GCGGCAGG TTTGCATTCTTCCGT Pden_3624 775896 - 776762 + | hypothetical protein Pden_3625 778309 - 776774 - | AAA ATPase TERM 472 777185 - 777139 - G 84 -16 -3.53012 | gap 2, opp_overlap 777129, overlap 777179 777180 TGCTGGCGGCGGAAA GCCGCGGCTCTTCGGCGCCCAC GACAT GCAGGCG-CGAAAAGCCG-GGC TTGCGCCCCGGTCCC Pden_3626 778971 - 778453 - | AsnC family transcriptional regulator Pden_3627 778997 - 779587 + | lysine exporter protein LysE/YggA Pden_3628 780452 - 779574 - | hypothetical protein Pden_3629 781497 - 780469 - | uroporphyrinogen decarboxylase TERM 473 781463 - 781484 + g 81 -2.1 -5.02074 | opp_overlap 781442 781457 781458 ACGGGCAAACGCTCG CCCTTCAGC GCGC GCAGGATGG TTTTTTCGGACATAA hemC 781573 - 782514 + | porphobilinogen deaminase Pden_3631 783443 - 782511 - | cobalamin biosynthesis protein CobD Pden_3632 784039 - 783440 - | phosphoglycerate mutase TERM 474 783576 - 783527 - G 75 -8.4 -4.18197 | gap 1, overlap 783513 783532 AGGCGCCACCGAAAA GGACAGCGC-CGCCGGGCCGACC GCCAG GGCCAGCGCGGCGCGAACCGTGC CTGCATGGGCAACGA Pden_3633 784178 - 785338 + | acyl-CoA dehydrogenase domain-containing protein Pden_3634 785338 - 785877 + | hypothetical protein Pden_3635 785895 - 786359 + | hypothetical protein TERM 475 786400 - 786376 - T 95 -14.9 -4.07568 | overlap 786360 786377 CGGGGCCGCGGAAAA CGGGCGCCACC AGC GGCGGCGCCCC CTTGGCGGTGACGAG TERM 476 786399 - 786377 - T 89 -18.4 -3.04398 | overlap 786360 786376 GGGGCCGCGGAAAAC GGGCGCCACC AGC GGCGGCGCCC CCTTGGCGGTGACGA Pden_3636 787054 - 786419 - | OmpW family protein TERM 477 787556 - 787545 - g 72 -3.6 -4.60487 | overlap 787546 787548 GATGACGGTGAAAAA GCAC CTGC GCGC GCAGGAGATCGCCGA Pden_3637 787177 - 788781 + | propionyl-CoA carboxylase Pden_3638 788787 - 789287 + | appr-1-p processing domain-containing protein TERM 478 791190 - 791223 + G 73 -13.1 -3.53012 | gap 1, opp_overlap 791186 791184 791182 GATGGAACATACGCT GACCGCCGCC-CGCGA CGG TCGCGTGGCCGAGGTC TTTGCCCGGGCCGGC Pden_3639 789367 - 791295 + | carbamoyl-phosphate synthase L chain, ATP-binding Pden_3640 791292 - 791945 + | glutathione S-transferase domain-containing protein TERM 479 792004 - 791988 - g 70 -3.5 -4.48987 | overlap 791989 CCTGCAGAACGAAAA GCGCCTG ATC CCGGCGG CGGAAAAGGTCGCGC TERM 480 792727 - 792685 - g 71 -2.5 -4.65895 | gap 1, overlap 792686 792687 792719 GTCGCGACCGAAAAA CTTGCCGCGCATC-TGGCCG CGCA CGGCCACGACACCGGGCTGG ACATGGCGGTGATCG Pden_3641 791932 - 792801 + | hydroxymethylglutaryl-CoA lyase TERM 481 793515 - 793544 + G 83 -14.9 -3.61398 | GTCGAAGTCTGGGAG GGCGACGAGGCCC CCGA GGGCATCGCCGCC TTCTTCGACAAGCGC Pden_3642 792801 - 793583 + | enoyl-CoA hydratase TERM 482 794185 - 794197 + GT 75 -10.5 -3.87815 | overlap 794186 794188 CTTTCTGGCCGGCTT GCCGC ATG GCGGC TTTCTGGGCGTGGCC TERM 483 794549 - 794597 + GT 81 -13 -3.63968 | gap 1, overlap 794557 TCCTATCTTTCCGCC GCGATGCTGGCGACGGCCCAGCC GCCG GGCTGGGCCATA-CCGGCTGCGC TTTCGGCCTTTGGCA TERM 484 794664 - 794716 + GT 72 -11.3 -3.55444 | gap 3 TGACCATCCGGCACG GCACCTGGGGCGCGGCCTTG--CGGC TGAT GCTGTTCATGGCCGTGACCCAGG-GC TTTGCGGCCTGGGCG Pden_3644 795748 - 794966 - | hypothetical protein Pden_3643 793859 - 795055 + | major facilitator transporter Pden_3645 795841 - 796083 + | hypothetical protein TERM 485 796260 - 796289 + F 76 -9.9 -4.09108 | gap 1 CTTGCGGCACCGACG GACCTGCCCGCCCG GAT CGGG-GGGCAAGCC TTTGTATCGCTTGAG Pden_3646 796319 - 796765 + | heat shock protein Hsp20 TERM 486 796788 - 796806 + T 75 -12.4 -3.53012 | overlap 796790 GCCGGACCGGGGCTC TGCCCCGG ACC CCGGGGTA TTTGGAAAACGGAAA TERM 487 796790 - 796804 + T 77 -12.8 -3.34398 | overlap 796788 CGGACCGGGGCTCTG CCCCGG ACC CCGGGG TATTTGGAAAACGGA TERM 488 796826 - 796851 + T 78 -10.3 -3.95836 | opp_overlap 796824 796827, overlap 796821 796827 GAAAACGGAAAACGC AGGGCGTGGCC GCAG GGTCGCGCCCG TTGTCTTTTCAGAGT TERM 489 796827 - 796850 + T 75 -13.8 -2.96779 | opp_overlap 796827 796824, overlap 796826 796821 AAAACGGAAAACGCA GGGCGTGGCC GCAG GGTCGCGCCC GTTGTCTTTTCAGAG Pden_3647 797470 - 796871 - | recombination protein RecR Pden_3648 797812 - 797471 - | hypothetical protein Pden_3649 799594 - 797816 - | DNA polymerase III subunits gamma and tau TERM 490 798002 - 798037 + g 77 -14.7 -3.19642 | gap 2, overlap 798003 GGTCGGGTTCTGCAT GGCGCGG-GCGCG-GGC CTCG GCCTCGCGCGCCGCGCG TTGCTCGCTGATCGT TERM 491 798003 - 798036 + g 77 -18.2 -2.51464 | gap 2, overlap 798002 GTCGGGTTCTGCATG GCGCGG-GCGCG-GGC CTCG GCCTCGCGCGCCGCGC GTTGCTCGCTGATCG Pden_3650 799950 - 799654 - | hypothetical protein Pden_3651 800831 - 800145 - | aquaporin Z TERM 492 800221 - 800177 - G 76 -13.4 -3.48924 | overlap 800217 800219 CCACCTTCCACAGAA GGCCGCCCAGGACGGCGCCG GCGAT CGGCGCGACCCAGAACAGCC AGAGCTGTTGCAGCG TERM 493 802605 - 802592 - g 75 -5.9 -4.46112 | CTTCAGCGAAAGAAA GCGCC TGGA GACGC TGCCCGCCATCATCG Pden_3652 800979 - 802793 + | ABC transporter related Pden_3653 802948 - 803190 + | cold-shock DNA-binding domain-containing protein TERM 494 803225 - 803202 - T 70 -13.9 -2.62983 | opp_overlap 803200 CTGATTTCGACAGCA GGTCCGACC GATCCT GGTCGGACC TATCCCTTCCCGGAG TERM 495 803959 - 803986 + T 100 -12.6 -5.01732 | opp_overlap 803962, overlap 803960 803962 CTTGCTTGCCATTAC AAAGGCCGCCCC ATTT GGGGCGGCCTGC TTTTTTCACCCGGTT TERM 496 803960 - 803985 + T 90 -16.1 -3.60316 | opp_overlap 803962, overlap 803959 803962 TTGCTTGCCATTACA AAGGCCGCCCC ATTT GGGGCGGCCTG CTTTTTTCACCCGGT TERM 497 803962 - 803983 + T 93 -18.7 -3.37655 | opp_overlap 803962, overlap 803960 803959 GCTTGCCATTACAAA GGCCGCCCC ATTT GGGGCGGCC TGCTTTTTTCACCCG TERM 498 803983 - 803962 - T 100 -18.7 -3.96148 | opp_overlap 803960 803959 803962 GCTTGCCATTACAAA GGCCGCCCC ATTT GGGGCGGCC TGCTTTTTTCACCCG groEL 805649 - 804012 - | chaperonin GroEL Pden_3655 806209 - 807537 + | glycosyl transferase, group 1 Pden_3656 807534 - 808592 + | GumN family protein Pden_3657 808582 - 808917 + | hypothetical protein Pden_3658 808917 - 809558 + | hypothetical protein Pden_3659 809625 - 810545 + | putative manganese-dependent inorganic pyrophosphatase TERM 499 811147 - 811158 + G 70 -3.6 -4.41348 | overlap 811136 TTTACGAGGATCTGG GCGG CACC TCGC TTTATTTCGGCAAGC Pden_3660 810561 - 811430 + | HAD family hydrolase Pden_3661 811536 - 811982 + | dehydratase Pden_3662 812015 - 812944 + | riboflavin biosynthesis protein RibF Pden_3663 812944 - 813384 + | hypothetical protein Pden_3664 813381 - 814424 + | threonine aldolase Pden_3665 814840 - 814421 - | CinA domain-containing protein Pden_3666 815385 - 814885 - | phosphatidylglycerophosphatase A Pden_3667 816633 - 815398 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 500 816562 - 816594 + g 78 -12.6 -3.72576 | gap 1, opp_overlap 816578 CAGATTTAGGTCAGC CGCC-GCCCCGAGGC AATC GCCGCCGGGCAGGCG TTTCGTCGCGGCCAA Pden_3668 816691 - 817416 + | ribose 5-phosphate isomerase Pden_3669 817413 - 818813 + | pyridine nucleotide-disulphide oxidoreductase dimerisation region TERM 501 818954 - 818916 - g 84 -15.9 -3.45849 | gap 1 CGGAGATGATGACAA GGGCGGCAGGCAGCCACC GCAG GGCGGCGGCCAGC-GCCC CTGGGGCAGCCCGGG TERM 502 819373 - 819350 - g 88 -14.6 -3.80893 | gap 1, opp_overlap 819350 AGCGGACAACGGAAA TCGGCACCGGC CGC GCCGG-GCCGA TGGATTCGGGGCTGA Pden_3670 818872 - 820071 + | HflK protein Pden_3671 820071 - 821180 + | HflC protein TERM 503 821237 - 821260 + T 100 -15.2 -5.24989 | opp_overlap 821237 AAGCGCAACAGGAAA GGCGGGACGC ATCT GCGCCCCGCC TTTTTTCATGTCTCG TERM 504 821260 - 821237 - T 95 -17.4 -3.9344 | opp_overlap 821237 AAGCGCAACAGGAAA GGCGGGACGC ATCT GCGCCCCGCC TTTTTTCATGTCTCG Pden_3672 822499 - 821309 - | hypothetical protein TERM 505 821504 - 821468 - G 75 -4.9 -4.60487 | GATCAGGCCGAAAAA GGTCGGCAGGAAAGGCA GCT TGACCGGGCCGCCGACC AGGACCGGGCGGATG TERM 506 821591 - 821561 - G 70 -12.4 -3.25942 | AGTGCCCCAGACGAA CAGCGCCGCCCCCG CGA CGGGCGAGCCGCTG GCCACCAGATAGATC Pden_3673 822864 - 823505 + | TenA family transcription regulator Pden_3674 823982 - 823509 - | NUDIX hydrolase TERM 507 823535 - 823555 + g 74 -12.5 -3.58343 | TGATTTCCACATCGG GCGGGCTGC CGG GCGGTCCGC TTTCCCGATAATCCA TERM 508 824033 - 824002 - R 100 -19.4 -4.72272 | gap 1, opp_overlap 824025 GGCCGCCATGAAAAA GGCCCCGGCCGCGCG GGT CGCGCT-CCGGGGCC CCAGATTGGTCAGGA Pden_3675 824379 - 824056 - | hypothetical protein TERM 509 824336 - 824326 - G 72 -8.2 -4.09685 | overlap 824327 CGTCAGGTCGTAAAA GCGC GTC GCGC AATGGGGGCAAAGGC Pden_3676 824528 - 825211 + | hypothetical protein Pden_3677 825257 - 825901 + | GntR family transcriptional regulator TERM 510 825966 - 825950 - T 81 -9.3 -4.21827 | overlap 825943 825951 GCAAATACCCGAAAA CCCGGCG ATG CGGCGGG GCGCCGCCCGTGCCG Pden_3678 827300 - 825984 - | homoserine dehydrogenase Pden_3679 827901 - 827368 - | hypothetical protein Pden_3680 828509 - 828021 - | GCN5-related N-acetyltransferase TERM 511 828614 - 828573 - R 72 -11.5 -3.53012 | gap 1, opp_overlap 828577 828578, overlap 828575 828576 TCTTCGTTCTCCAAA TACTCGTGCGGCCGCGATGC CAG GCACCGCGGCCGCA-GCCTT GTCACGCCGCCCGCG TERM 512 828612 - 828575 - R 80 -14.1 -3.34398 | gap 1, opp_overlap 828577 828578, overlap 828573 828576 TTCGTTCTCCAAATA CTCGTGCGGCCGCGATGC CAG GCACCGCGGCCGCA-GCC TTGTCACGCCGCCCG TERM 513 828611 - 828576 - R 83 -17.6 -2.60496 | gap 1, opp_overlap 828577 828578, overlap 828575 828573 TCGTTCTCCAAATAC TCGTGCGGCCGCGATGC CAG GCACCGCGGCCGCA-GC CTTGTCACGCCGCCC TERM 514 828577 - 828612 + r 86 -15.4 -3.28712 | gap 1, opp_overlap 828576 828575 828573, overlap 828578 CGTTCTCCAAATACT CG-TGCGGCCGCGATGC CAG GCACCGCGGCCGCAGCC TTGTCACGCCGCCCG TERM 515 828578 - 828611 + r 89 -18.9 -2.57132 | gap 1, opp_overlap 828576 828575 828573, overlap 828577 GTTCTCCAAATACTC G-TGCGGCCGCGATGC CAG GCACCGCGGCCGCAGC CTTGTCACGCCGCCC Pden_3681 830760 - 828616 - | methylmalonyl-CoA mutase TERM 516 831069 - 831081 + G 73 -10.5 -3.86015 | opp_overlap 831065 CTTTGCCAATACCGC GGCCG ATC CGGCC TTTGTCGAGCAACTG Pden_3682 830818 - 831345 + | hypothetical protein Pden_3683 832252 - 831593 - | hypothetical protein TERM 517 832267 - 832294 + r 82 -15.5 -3.1355 | TGGGTTCCCACCTTG CAGCCGGGCGC CTGCAA GCGCCCGGCGG TTGCCTGTCACTCGA Pden_3684 834359 - 832302 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 518 834423 - 834397 - R 100 -21.6 -4.66833 | CCCGAACGTGAAAAA GCCGCCCCGGCA GGT TGCCGGGACGGC TGGAAAAAGGCTGGA TERM 519 834465 - 834432 - R 71 -3.8 -4.57569 | gap 2, opp_overlap 834456 834458, overlap 834433 GGACGGCTGGAAAAA GGCTGGATCGGCGCGC CGAG GCGGGCCG-TC-AGCG TGGCGAAGGCGTTAT TERM 520 834497 - 834546 + r 83 -14.9 -3.28712 | gap 1, opp_overlap 834490 GGCACAGACGCACGT CGTCGCAGAGCGCGCCGGCGACAG CGC CGATCGCCG-CGCCCTTGGCGACG TTGTGGCCGCCCACA Pden_3685 835001 - 834756 - | hypothetical protein Pden_3686 835560 - 835147 - | hypothetical protein Pden_3687 836623 - 835970 - | hypothetical protein Pden_3688 838181 - 836649 - | carboxyl transferase TERM 521 837502 - 837520 + g 77 -4.4 -4.75472 | overlap 837508 ACGTCGTTTTCGAAG GCGCCGTC GGC GACCGAGC TTTTCTTGGTATGGG TERM 522 838344 - 838302 - g 81 -10.5 -4.31329 | gap 1 GCAAAAATGCTAAAA CCCTTGACGCCGCGCATGGC AGGA GCCATGC-CGCTGCCATGGG ACTCGTCATCGATAT TERM 523 838459 - 838497 + G 95 -14.6 -4.2461 | TGGGCTGGGCGCGGA TCGCGTCGCG-CCGCCGC TTTAC GCGGCGGGCGCG-CGGGA TTTCTTCGTCGCGCT Pden_3689 838262 - 839359 + | alanine racemase Pden_3690 839356 - 840114 + | hypothetical protein Pden_3691 840114 - 840851 + | ABC transporter related TERM 524 840836 - 840857 + F 82 -4.3 -5.0133 | CCGCCCCATGGCGCG CGGACCGCA AGCA TGATGTCCG TTTTTTCGCCGAATC TERM 525 840899 - 840889 - f 70 -4.6 -4.35524 | opp_overlap 840891 840893, overlap 840891 GCTGCAAATCCAAAA CAGC GGG GCCG CCCCTCTTGTGCGAA TERM 526 841165 - 841186 + G 73 -12.3 -3.53444 | gap 1 GAGGCCCAGGCCGAG GCG-GCGCAG GTG CTGCGCGCGC TTTACGCAAGGCTGG Pden_3692 840967 - 842094 + | PhoH family protein Pden_3693 842087 - 842611 + | hypothetical protein Pden_3694 842608 - 843540 + | CBS domain-containing protein Pden_3695 844356 - 843547 - | GCN5-related N-acetyltransferase TERM 527 844544 - 844525 - R 100 -15 -4.54727 | opp_overlap 844531 TCCCCGAAACGAAAA GGGCAGCC CCGC GGCTGCCC TTCGGGGTCATTCCC guaA 846111 - 844552 - | bifunctional GMP synthase/glutamine amidotransferase protein Pden_3697 846904 - 846293 - | thiamine monophosphate synthase TERM 528 847573 - 847586 + G 78 -5.9 -4.56978 | opp_overlap 847548 CACTGGGAGGAGCGG CTGGC CGAG GCCGG TTTCTTCTTTCCGCC Pden_3698 846979 - 847719 + | RNA methyltransferase TERM 529 847873 - 847903 + G 72 -13.2 -3.25015 | opp_overlap 847864 847865, overlap 847872 847874 CCACAAGGGCGCGCG CGGCGCGATCCGCC TTT GGCTGGTCGTGCTG TTCGTCATGGTTGCG TERM 530 848387 - 848411 + G 79 -11.3 -4.07568 | overlap 848410 GCCTGGTATGTGCTG GCGCTGTCGCG GTC CGAGGCGGCGC TTTTGCGCGCCCGCC TERM 531 848410 - 848444 + G 70 -4 -4.42386 | overlap 848387 848413 848414 GCGGTCCGAGGCGGC GCTTTTGCGCGCCCGC CGG GCCGGCGAGGCCAAGC TTTTCTCGATGACCA Pden_3699 847745 - 848920 + | cytochrome oxidase assembly Pden_3700 848917 - 850389 + | carboxypeptidase Taq TERM 532 850449 - 850421 - f 74 -10.2 -3.81146 | opp_overlap 850420 850421 850442 TTGGGGAACGAAGAA GCCGGGCGCC GGGCGTTAT GGCGGCCGGC CTTTCCAAGCCGGGC TERM 533 850442 - 850465 + F 78 -8 -4.39166 | opp_overlap 850421, overlap 850421 850420 CGCCGGGCGTTATGG CGGCCGGCCT TTCC AAGCCGGGCG TTTTCCTGTATCAGG TERM 534 851077 - 851114 + G 83 -12.7 -4.07885 | gap 1, overlap 851055 CATCCTGGCCGAGGC GCGCGATCTGGTCGCGCG CGG CGTGCG-CGAGATCACGC TTTTGGGCCAGAATG TERM 535 851600 - 851620 + G 72 -13.3 -3.14132 | GCCGTGGCCGATGCG CGCCTGCAG GAA TTGCAGGCG TTGCTGACCAGCCAG Pden_3701 850505 - 851842 + | RNA modification protein Pden_3702 853206 - 851875 - | glutamate--ammonia ligase Pden_3703 854037 - 853210 - | polar amino acid ABC transporter, inner membrane subunit TERM 536 853453 - 853441 - G 73 -7.7 -4.19577 | GAAGCCGGAAAAGAA CACCA GCG TGGTG GCGTGGAACAGGAAG Pden_3704 854915 - 854034 - | binding-protein-dependent transport systems inner membrane component TERM 537 854552 - 854534 - G 71 -11.6 -3.57144 | CCGGCGAGGTCGAAA GCGGCAGC TTG GCGGCCGC GCAGACGATGAACTC TERM 538 854691 - 854664 - G 70 -3.5 -4.45807 | CACGAAAAGAAAGAA GATGATGTCG-GG CACG CCGCG-CACCATC GAGGTGTAGATGCGG Pden_3705 855686 - 854964 - | extracellular solute-binding protein Pden_3706 856532 - 855711 - | ABC transporter related TERM 539 855782 - 855738 - G 80 -16.3 -3.14132 | opp_overlap 855750 855752, overlap 855773 GGTTGCGCTCAGGAA CTGGCGCAGCCGTTCGGATCG CGG CGCACCGAAAAGCTGCGCCGG CGGTCCCTCTTCCTC TERM 540 856238 - 856271 + g 71 -11 -3.54424 | overlap 856239 TCACCTGGGCCCGGT CGGCG-GGCACGCGGG CCAG CCCG-GTGCCGCGCCA TTTCACCGCCTCGCC TERM 541 856239 - 856270 + g 70 -14.5 -2.72511 | overlap 856238 CACCTGGGCCCGGTC GGCG-GGCACGCGGG CCAG CCCG-GTGCCGCGCC ATTTCACCGCCTCGC Pden_3707 857118 - 856657 - | hypothetical protein Pden_3708 857467 - 857171 - | hypothetical protein Pden_3709 858447 - 857539 - | hypothetical protein Pden_3710 858966 - 858511 - | hypothetical protein TERM 542 858716 - 858733 + g 75 -6.3 -4.4078 | gap 1, opp_overlap 858697, overlap 858715 ACCACGGTGCCGTCC GC-GGTGA AGA TCACCCGC TTTTCGTTGGCCGGG Pden_3711 860657 - 859014 - | CTP synthetase secG 861336 - 860806 - | preprotein translocase subunit SecG Pden_3713 861405 - 862838 + | cobyric acid synthase CobQ Pden_3714 863545 - 862835 - | short-chain dehydrogenase/reductase SDR TERM 543 862924 - 862913 - G 72 -3.6 -4.56597 | overlap 862914 862915 CTCGCCCGGGAAAAA GCGC GCGC GCAC GGCCGTCGGCATCGG Pden_3715 864020 - 863640 - | hypothetical protein TERM 544 864041 - 864065 + r 100 -19.3 -3.23692 | opp_overlap 864041 GGGGGCGCAGCAGAA CGGCCCCGGAG CTT TTCCGGGGCCG TTCCTGATCCTGGTC TERM 545 864065 - 864041 - R 93 -18.6 -3.40403 | opp_overlap 864041 GGGGGCGCAGCAGAA CGGCCCCGGA GCTTT TCCGGGGCCG TTCCTGATCCTGGTC Pden_3716 865381 - 864089 - | citrate synthase I TERM 546 865355 - 865365 + g 79 -2.4 -4.93365 | overlap 865353 CTTGCCCTCGAGATG CAGC CTT GCGG TTTTTCCTTCTGCCA Pden_3717 866842 - 865436 - | glutamyl-tRNA synthetase Pden_3718 866992 - 869145 + | ComEC/Rec2-related protein Pden_3719 869183 - 869752 + | heme NO binding domain-containing protein Pden_3720 869749 - 870711 + | diguanylate cyclase Pden_3721 870984 - 871859 + | hypothetical protein Pden_3722 871922 - 872185 + | hypothetical protein Pden_3723 872182 - 872424 + | hypothetical protein Pden_3724 872490 - 873362 + | response regulator receiver protein TERM 547 873419 - 873398 - T 93 -18.7 -3.62096 | opp_overlap 873385 GCGCATGATGCGAAA CGCCGGCCC GATG GGGCCGGCG CTCGCAATTCGGCTG tsf 874335 - 873445 - | elongation factor Ts TERM 548 874358 - 874390 + r 82 -15.6 -3.08996 | CTCCTTGCTTTTCAA TGCGTCAGGCGGGG TTTAT CCCCGCCTGATGAA TGTTCCGTAAACCTG rpsB 875218 - 874433 - | 30S ribosomal protein S2 Pden_3727 875753 - 875902 + | hypothetical protein TERM 549 875970 - 875989 + T 70 -7.9 -3.96148 | opp_overlap 875985 GAACGCCGGTTTAGC TCAGCTG GTAGAG CAGCTGA TTTGTAATCAGAAGG Pden_3728 877131 - 876103 - | phage integrase family protein TERM 550 876132 - 876144 + g 70 -3.3 -4.50159 | CGTTCCGTTCCATCG CTGCC CGT GACAG TTTCTTTCGATTCGC Pden_3729 877334 - 877128 - | hypothetical protein Pden_3730 877580 - 877335 - | hypothetical protein Pden_3731 878016 - 877561 - | HNH endonuclease Pden_3732 878258 - 878016 - | hypothetical protein Pden_3733 878757 - 878356 - | hypothetical protein Pden_3734 879273 - 878995 - | hypothetical protein Pden_3735 879910 - 879266 - | hypothetical protein Pden_3736 880430 - 879900 - | hypothetical protein Pden_3737 880806 - 880555 - | hypothetical protein TERM 551 880863 - 880828 - R 93 -14 -4.07568 | gap 1, overlap 880829 CTCCTGTTTCGAAAA GCCCCGGCTGG-CGCTT GCG AACCGGCCAGCCGGGGA GTGGCCGCGCCCGGC TERM 552 880862 - 880829 - R 88 -17.5 -3.04398 | gap 1, overlap 880828 TCCTGTTTCGAAAAG CCCCGGCTGG-CGCTT GCG AACCGGCCAGCCGGGG AGTGGCCGCGCCCGG Pden_3738 881876 - 880905 - | Fis family transcriptional regulator Pden_3739 882856 - 881888 - | putative phage-related protein Pden_3740 883261 - 882959 - | hypothetical protein Pden_3741 883566 - 883261 - | hypothetical protein Pden_3742 883850 - 883566 - | hypothetical protein TERM 553 883859 - 883845 - G 81 -7 -4.66833 | CGTCAAGCGTAAAAA GCGCAC ATC GGGCGC TTAAAGCGCACAAAT TERM 554 883959 - 883941 - R 75 -7.3 -4.25104 | overlap 883942 GGCCGCGCATGAAAA GGCCCGC GCGAG GCGGGCT GGCAATCTCCAAGGA Pden_3743 884574 - 883987 - | hypothetical protein TERM 555 884216 - 884204 - G 70 -9.1 -3.84961 | TACGCAAGGACGAAA CTGCC GAC GGCAG CCATGCAGCCTATGA Pden_3744 884804 - 884562 - | hypothetical protein Pden_3745 885220 - 884798 - | hypothetical protein TERM 556 884992 - 885006 + g 71 -11.4 -3.5594 | overlap 885002 TCTGATAGCTCCTGA GCTGCC CGC GGCAGC TTTCGAAGCTGAATT Pden_3746 885880 - 885407 - | XRE family transcriptional regulator Pden_3747 886094 - 886435 + | hypothetical protein Pden_3748 886553 - 886882 + | hypothetical protein TERM 557 887133 - 887118 - g 70 -8.2 -3.86346 | GGAGCCGCCTACAAA CGCCCC GGAT GAGGCG ACGGAAGCAGAGAAG TERM 558 887406 - 887385 - g 77 -3.7 -4.6902 | gap 1 GGACAACGTGAAAAA GCGC-ACC TGCCTGT GGTTGCGC GGCCTGCCCAAGCTC Pden_3749 886882 - 887592 + | hypothetical protein Pden_3750 887626 - 888087 + | hypothetical protein Pden_3751 888087 - 888629 + | hypothetical protein Pden_3752 888626 - 888994 + | hypothetical protein TERM 559 889180 - 889203 + F 70 -2.4 -4.59773 | gap 1, overlap 889188 CCCGCGAAGTTCAAG CCGGTCTGG GCCGAAA TCAG-CCGG TTTTTCGAGGTGGAC TERM 560 889354 - 889374 + F 82 -6.9 -4.64676 | opp_overlap 889340 GTGGCATCTGGCAAT TGCCATG CGGATGC CATGGCA TTTTCTTCAGAGTCC TERM 561 889427 - 889408 - f 100 -10.8 -5.24796 | GTCAGAGAAGAAAAA GAAGAACC TATC GGTTCTTC CAAAAAGCCCCCTCG Pden_3754 890380 - 890703 + | hypothetical protein Pden_3755 890706 - 891107 + | hypothetical protein TERM 562 892432 - 892398 - g 71 -9.8 -3.77588 | overlap 892423 ATCCGACATGAAGAA GCGCGGCGTCTCCAGC CCC GACGAAGCCGACGCGC TGGCGCTGACCTTCG Pden_3756 891208 - 892533 + | PBSX family phage terminase large subunit Pden_3757 892594 - 892848 + | hypothetical protein Pden_3758 892848 - 896072 + | hypothetical protein Pden_3759 896330 - 898006 + | putative head-tail connector protein Pden_3760 898003 - 898332 + | hypothetical protein Pden_3761 898325 - 898981 + | hypothetical protein Pden_3762 898985 - 900016 + | hypothetical protein Pden_3763 900074 - 900502 + | hypothetical protein TERM 563 900575 - 900602 + G 70 -12 -3.29144 | gap 1, overlap 900576 GCACGCCCCCGAGGA C-GGCCCGTTTCG CAT CGAGGCGGGCCTG TTCTCCGGGCGCTGG TERM 564 900576 - 900600 + G 77 -15.7 -3.21395 | overlap 900575 CACGCCCCCGAGGAC GGCCCGTTTCG CAT CGAGGCGGGCC TGTTCTCCGGGCGCT Pden_3764 900495 - 900818 + | hypothetical protein Pden_3765 900876 - 901178 + | hypothetical protein Pden_3766 901229 - 901837 + | hypothetical protein Pden_3767 901837 - 903876 + | hypothetical protein Pden_3768 903878 - 904345 + | hypothetical protein Pden_3769 904345 - 904896 + | hypothetical protein Pden_3770 904896 - 907511 + | hypothetical protein TERM 565 907491 - 907505 + F 79 -5.6 -4.67038 | opp_overlap 907476, overlap 907484 TCGCCACTCTATGGC GCTGCC GCC GTCAGC TTTTGATTTTCAGGG TERM 566 908266 - 908241 - g 71 -11.1 -3.60792 | gap 1, overlap 908242 TGGCCAAGCCGGAAA GTGCTGGCGCGG CGG CGGCGCCAGC-C GTGACCCTCGATGAC Pden_3771 907529 - 910828 + | hypothetical protein Pden_3772 911285 - 910818 - | hypothetical protein TERM 567 911311 - 911292 - R 89 -12.8 -4.05788 | GCCCCTCAAAGCAAA GGGCCGCC CGGA AGCGGCCC CGTGGCCCCTGTAGG Pden_3773 911693 - 911496 - | hypothetical protein Pden_3774 911996 - 911697 - | Arc domain-containing protein Pden_3775 912308 - 913123 + | hypothetical protein Pden_3776 913120 - 913377 + | hypothetical protein Pden_3777 913374 - 913730 + | hypothetical protein TERM 568 913756 - 913773 + F 93 -14.1 -4.14392 | opp_overlap 913755 ATCACTGCCAACTAG GCCCCGC TTCG GCGGGGC TTTTGCGAATTCGGC Pden_3778 914005 - 916314 + | metallophosphoesterase Pden_3779 916324 - 916611 + | hypothetical protein TERM 569 916691 - 916719 + F 100 -13 -4.46656 | GTGCAGCCGGGTCTA CCGCCAGCCTCC CAGCC GGTGGCGGGCGG TTTTCATGTTCTGCG TERM 570 917543 - 917579 + G 73 -7.9 -4.15006 | gap 1, opp_overlap 917537 GCTGGAACACCCGCC GCGCCGTCAGCG-GGC ATCATC GCCGCGCTTCTGGCGC TTTTCAAGTCCATGT Pden_3780 916814 - 917608 + | peptidoglycan binding domain-containing protein Pden_3781 917805 - 918059 + | hypothetical protein TERM 571 918419 - 918402 - T 100 -10.5 -5.45802 | opp_overlap 918401 918402 TGCGGAAAATAAAAA CCGGCCC CGAA GGACCGG CTTTCGTGGCGGAAA Pden_3782 918847 - 918515 - | hypothetical protein Pden_3783 919489 - 919205 - | hypothetical protein Pden_3784 920022 - 920606 + | Fis family transcriptional regulator TERM 572 920969 - 920994 + G 75 -5.4 -4.55128 | gap 1, opp_overlap 920955, overlap 920969 ATGCTGCGCGCGGTG CTGG-CGGCGC AGCCG GCGCTGGTCAG TTTTCATTTCGGCCT Pden_3785 920603 - 921682 + | 2-nitropropane dioxygenase, NPD TERM 573 921739 - 921761 + F 77 -11.3 -3.69354 | gap 1 CAGGCCGCTTCGACA GGGTCG-GGC GCAT GCCGCGACCC TTTGCGCTTATCCCG TERM 574 921806 - 921790 - f 79 -4.3 -4.89852 | overlap 921793 CGACACCTACAAAAA GACCGGC GGA GCCAACC GCATGGCCGGAAATG TERM 575 922847 - 922804 - g 79 -11 -3.99374 | gap 1 CTGGACCAAGAAGAA CGTCCACC-CCGGCAAGATCG TCT CGACCTCGCAGGAAGTCGACG TCATGGTGCTGGAGA rpsA 921809 - 923524 + | 30S ribosomal protein S1 TERM 576 923546 - 923570 + F 100 -20 -4.41494 | CATAGGCTGAACTTT GCGCCCCCGG CCCGT CCGGGGGCGC TTTTCGTTGCGGATC ihfB 923722 - 924009 + | integration host factor subunit beta TERM 577 924168 - 924197 + G 100 -18.7 -3.89501 | gap 1, overlap 924160 CTGGCGCCCTTTGCC GGCGGGCAATGGTC GTT GACCAT-GCCCGCC TTTGTCGCGCTGTTC Pden_3788 924048 - 924449 + | hypothetical protein Pden_3789 924454 - 925101 + | phosphoribosylanthranilate isomerase Pden_3790 925113 - 925565 + | GCN5-related N-acetyltransferase Pden_3791 925618 - 926850 + | tryptophan synthase subunit beta TERM 578 926885 - 926859 - T 84 -13.7 -3.66654 | CACCTGAATGCGAAA GGCGCGCGC TATTTCGCG GCGCGCGCC TCGGCCACCAGTTCG Pden_3792 927484 - 926867 - | DSBA oxidoreductase Pden_3793 927552 - 928208 + | 2OG-Fe(II) oxygenase TERM 579 928195 - 928220 + T 100 -12.5 -4.92239 | gap 1 TCAACCTGACCTTTC GCC-GCGCCGGC TAG GCCGTCGCAGGC TTTTTCCGTTTTTCA TERM 580 928296 - 928240 - T 93 -18.4 -3.34398 | opp_overlap 928276 928288, overlap 928238 928271 TCCGTTTTTCAAATA CCCCGGGGGAGCGCGGCGTCCGCCCC ATCAA GGGGCGGGCGCCGCGCGGGGGCGGAG CCCCTTTACTTCCAG TERM 581 928288 - 928300 + T 75 -10.5 -3.91084 | opp_overlap 928238 928240 928271, overlap 928276 GGCGGGCGCCGCGCG GGGGC GGA GCCCC TTTACTTCCAGATCG Pden_3794 929129 - 928302 - | hypothetical protein Pden_3795 930628 - 929216 - | polysaccharide deacetylase Pden_3796 930848 - 932212 + | xanthine/uracil/vitamin C permease TERM 582 932265 - 932285 + T 90 -16.1 -3.66356 | opp_overlap 932265 AGCGTAAAAGAACAA GGCCCGCCG CTT TGGCGGGCC TTTCCAGTTCCGGGT TERM 583 932285 - 932265 - T 100 -15.4 -4.21471 | opp_overlap 932265 AGCGTAAAAGAACAA GGCCCGCC GCTTT GGCGGGCC TTTCCAGTTCCGGGT Pden_3797 933260 - 932343 - | RpiR family transcriptional regulator Pden_3798 933412 - 934737 + | hypothetical protein Pden_3799 934745 - 936244 + | MlrC domain-containing protein Pden_3800 936241 - 937833 + | extracellular solute-binding protein TERM 584 937875 - 937834 - f 84 -14.3 -3.66429 | gap 1, overlap 937824 937837 AAGAAGCCCGAATAA GCAGGTCCGGGCGCGCGGGC CTT GCCCGCGC-CCCGACGCTTC ACGAGAGGTCGCCAT TERM 585 937872 - 937837 - f 79 -14.6 -2.93817 | gap 1, overlap 937824 937834 AAGCCCGAATAAGCA GGTCCGGGCGCGCGGGC CTT GCCCGCGC-CCCGACGC TTCACGAGAGGTCGC Pden_3801 937889 - 938833 + | binding-protein-dependent transport systems inner membrane component Pden_3802 938830 - 939693 + | binding-protein-dependent transport systems inner membrane component Pden_3803 939693 - 941363 + | ABC transporter related Pden_3804 941360 - 942220 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 586 942734 - 942767 + G 74 -12.3 -3.53563 | gap 1, opp_overlap 942753 942754 GGCACGCCGATCGAC GATGCCGTGGCGGCCG AAA TGGCCGCC-CGGCCGC TTTAGAACGGGATGT Pden_3805 942233 - 942772 + | carboxymuconolactone decarboxylase Pden_3806 943281 - 942769 - | single-strand binding protein Pden_3807 943514 - 944161 + | lytic transglycosylase, catalytic TERM 587 944197 - 944164 - T 93 -18.3 -3.60627 | gap 1, opp_overlap 944164 944171, overlap 944171 CCACGGCAGCTGAAA CGAAAAAGGCCGGGCA GGG CGCCCGGCCTTTT-CG ATTTTCGTCCCTCGG TERM 588 944164 - 944197 + T 88 -17.6 -3.16647 | gap 1, opp_overlap 944164 944171, overlap 944171 CCACGGCAGCTGAAA CGAAAAAGGCCGGGC AGGGC GCCCGGCCTTTT-CG ATTTTCGTCCCTCGG TERM 589 944191 - 944171 - T 100 -16.1 -4.99134 | opp_overlap 944164 944171, overlap 944164 AGCTGAAACGAAAAA GGCCGGGCA GGG CGCCCGGCC TTTTCGATTTTCGTC TERM 590 944171 - 944191 + T 100 -15.4 -4.44277 | opp_overlap 944171 944164, overlap 944164 AGCTGAAACGAAAAA GGCCGGGC AGGGC GCCCGGCC TTTTCGATTTTCGTC Pden_3808 944796 - 944224 - | hypothetical protein Pden_3809 945787 - 944867 - | delta-aminolevulinic acid dehydratase Pden_3810 945864 - 946583 + | hypothetical protein TERM 591 947238 - 947222 - g 75 -8.7 -4.18018 | overlap 947207 947208 GCGTTCCATCGAAAA GCTCGAC CGG ATCGAGC TTGCGCCCATGTCCG TERM 592 947616 - 947637 + G 74 -10.9 -3.80625 | gap 1, opp_overlap 947605 TGGATGCGCTGGCTG GCCGC-GCAT CGC ATGCTGCGGC TTTCGGTTCTGCCCC Pden_3811 946626 - 950090 + | transcription-repair coupling factor TERM 593 950129 - 950144 + T 73 -11.8 -3.34398 | overlap 950106 950126 GACCGGGGGCGCTGC CCCCGG ACCC CCGGGG TATTTGGACAACGGA TERM 594 950372 - 950349 - T 100 -16 -4.27316 | opp_overlap 950349 TGCCTGAACCGAAAA GGGCGACGCC GGTT GGCATCGCCC TTGGGTCTGGATCAA TERM 595 950349 - 950372 + T 76 -13.8 -3.1355 | opp_overlap 950349 TGCCTGAACCGAAAA GGGCGACGCC GGTT GGCATCGCCC TTGGGTCTGGATCAA Pden_3812 952702 - 950384 - | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 596 952201 - 952244 + g 75 -10.1 -4.07568 | gap 1 TGGCCTGGGCGGTTT CCGCCTGGGCCTGGTC-CTG CTGCT CGGCGCCCTGGACCGGGCGG TTTTCCGAGAAGGAC Pden_3813 953710 - 952964 - | hydroxyacylglutathione hydrolase Pden_3814 953762 - 954544 + | methyltransferase type 11 Pden_3815 954784 - 955419 + | ATP synthase F1, delta subunit Pden_3816 955419 - 956954 + | F0F1 ATP synthase subunit alpha Pden_3817 956967 - 957839 + | F0F1 ATP synthase subunit gamma TERM 597 957890 - 957879 - g 77 -4.4 -4.74504 | overlap 957882 AGGCCAATGGAAAAA TCAC GCAG GTGA TCGGCGCCGTCGTCG Pden_3818 957857 - 959281 + | F0F1 ATP synthase subunit beta Pden_3819 959291 - 959737 + | ATP synthase F1, epsilon subunit TERM 598 959781 - 959763 - f 95 -13.1 -4.24786 | opp_overlap 959763 TCCAGAAGATAGAAA GCCCCGG TTTTT CCGGGGC TTTATTCATTCGCCG TERM 599 959763 - 959781 + F 95 -13.1 -4.3255 | opp_overlap 959763 TCCAGAAGATAGAAA GCCCCGG TTTTT CCGGGGC TTTATTCATTCGCCG Pden_3820 959832 - 960182 + | hypothetical protein Pden_3821 960958 - 960188 - | alpha/beta hydrolase fold TERM 600 960574 - 960527 - G 74 -13.3 -3.36785 | gap 1, opp_overlap 960533 CCAGACGCCAAGGAA GGCGCGGGCCGCCTCGGCATCC TCTCC GG-CGGCGAGACGGGCCGCGAC ATCGTCCAGCAGCGC Pden_3822 961554 - 960955 - | DSBA oxidoreductase TERM 601 961263 - 961216 - G 77 -11.2 -3.86015 | gap 1, opp_overlap 961228 GACGGCGCGCAGAAA GCCCTGCACGAGGCCGGGCAG GTTGCCG CCGCCCG-CCTCTTGCGCGGC GATGATGGCATAGGA TERM 602 962038 - 962070 + G 72 -3.3 -4.62471 | overlap 962039 GTGGACCGCGTGCTG ACGCTGGACCTGC ATGCCGC GCAGATCCAGGGC TTTTTCGACATTCCG Pden_3823 961636 - 962655 + | ribose-phosphate pyrophosphokinase TERM 603 962674 - 962700 + T 100 -15.9 -4.73388 | gap 1, opp_overlap 962674 CCCTTGCCGCAAAAA GGCCCCGG-TCC GAAT GGAACCGGGGCC TTTTTCATGCGGCTT TERM 604 962700 - 962674 - T 100 -17.3 -4.56597 | opp_overlap 962674 CCCTTGCCGCAAAAA GGCCCCGGTCC GAATG GAACCGGGGCC TTTTTCATGCGGCTT Pden_3824 963175 - 962723 - | CoA-binding domain-containing protein TERM 605 963246 - 963218 - R 100 -18.2 -4.66163 | gap 1 AGTGGCATGGAAAAA GCGCCCGGTCCAG AGGT CTGG-CCGGGCGC AAGTCGCGGAACGAG Pden_3825 963772 - 963359 - | hypothetical protein Pden_3826 964670 - 963873 - | RNA methyltransferase Pden_3827 965072 - 964815 - | hypothetical protein TERM 606 965079 - 965049 - G 100 -14.1 -5.07652 | gap 1 CTGCGCAAAAGAAAA CCGTCGGA-GGAGC TGGC ACTCCATCCGACGG CACTGTCAAAGGTCT TERM 607 965599 - 965569 - g 95 -15.5 -3.96224 | gap 1 GAAACCATCCATAAA CCACCTTCGCGTGC GCGT GCACGCG-AGGCGG CGGCGGAATCTCTGG Pden_3828 965152 - 966009 + | hypothetical protein Pden_3829 966002 - 967363 + | hypothetical protein Pden_3830 967468 - 967713 + | CopG/Arc/MetJ family transcriptional regulator Pden_3831 967710 - 967997 + | plasmid stabilization system protein Pden_3832 968083 - 968589 + | hypothetical protein Pden_3833 969986 - 968814 - | hypothetical protein Pden_3834 970254 - 970937 + | hypothetical protein Pden_3835 971449 - 970940 - | hypothetical protein Pden_3836 971948 - 971625 - | hypothetical protein Pden_3837 972058 - 972303 + | helix-turn-helix domain-containing protein Pden_3838 972636 - 973571 + | DNA methylase N-4/N-6 domain-containing protein Pden_3839 973574 - 974044 + | hypothetical protein TERM 608 974253 - 974229 - g 82 -11.4 -4.1899 | GTACCGCATGGAAAA CTGCCGCACG TTCAG CGCGCAGCAG ACGGAGATCGCCCGT Pden_3840 974059 - 975390 + | hypothetical protein Pden_3841 975397 - 977307 + | helicase domain-containing protein Pden_3842 977304 - 978140 + | hypothetical protein Pden_3843 978209 - 978457 + | hypothetical protein Pden_3844 979703 - 978675 - | transposase IS116/IS110/IS902 family protein TERM 609 979089 - 979105 + g 75 -6.5 -4.39426 | overlap 979090 TTCTTCGCCGAATTG GGCTTCG CGA CGAAGCG TTTTCTCGAGGTCTG Pden_3845 979812 - 980135 + | transposase IS3/IS911 family protein TERM 610 980498 - 980474 - g 72 -6.3 -4.30987 | overlap 980475 980494 ATCCCGGACAAGAAA GCTCCCTGTCC GCT GGACAAGGTGA ACCGCCAGTTCCGCG Pden_3846 980135 - 981040 + | integrase catalytic subunit Pden_3847 981894 - 981103 - | XRE family transcriptional regulator TERM 611 981942 - 981927 - H 85 -7.6 -4.66163 | ACTTCGATGCAAAAA GTGCAA GAAC TTGCAC CGATATGGCATGGAT Pden_3848 981969 - 982262 + | hypothetical protein TERM 612 982767 - 982746 - g 78 -17.3 -2.73542 | opp_overlap 982730 982737 CGCAACGCTGAAGCA GCGGCGCAG TGTC CTGCGCCGC CTCTGCGACTATTCG Pden_3849 982462 - 983535 + | phage integrase family protein Pden_3850 983791 - 984180 + | hypothetical protein Pden_3851 986230 - 984185 - | hypothetical protein TERM 613 984591 - 984603 + g 71 -10.5 -3.71873 | GACGCCGGAGGCTTG GCGCG CAG CGCGC TTTCGCTGTCGATCA Pden_3852 987189 - 986350 - | hypothetical protein TERM 614 986823 - 986791 - G 72 -13.3 -3.16564 | opp_overlap 986781 986812 CGCCCAGTTCATGAA GGCGTTGGCGCCGTC GGT GACGGTGCCCACGTC GCCATAGGCATCTTC Pden_3853 987768 - 987193 - | hypothetical protein TERM 615 987959 - 987940 - H 83 -15 -3.19192 | opp_overlap 987937 CGGCACCGAACGGAA GGCCGGGT TTTC ACCCGGCC CGCTTCCATGCCACC TERM 616 988076 - 988125 + H 75 -9.1 -3.96483 | GTCCTGAGGAACGGT GCCGCCGGGCCATGGCCGGGA AACGGTGA TGGCGGTCCTGGCTCGGCTGC TTCTTTCCGTGGCGT TERM 617 988271 - 988295 + G 78 -9.9 -4.21194 | overlap 988248 GAGGGACATCCCTAT GGGCGCGCTGA TAT TCGGCCCGCTC TTTTCCATCGTCGGG Pden_3854 988104 - 988364 + | hypothetical protein Pden_3855 988797 - 988330 - | hypothetical protein TERM 618 988815 - 988831 + H 86 -15.1 -3.51411 | overlap 988811 988816 GACCCGCGGAGGTGA CCGGCGC TGA GCGCCGG TTGGTTTCGCCCCCT Pden_3856 988892 - 989887 + | substrate-binding region of ABC-type glycine betaine transport system TERM 619 989907 - 989937 + F 100 -19 -3.84451 | overlap 989908 CGCCATCGCGCCTGA CGGGCAAGGTCGCG GGT CGCGGCCTTGCCCA TTTCCGTTTCCAAAG TERM 620 989908 - 989936 + F 100 -22.5 -2.90349 | overlap 989907 GCCATCGCGCCTGAC GGGCAAGGTCGCG GGT CGCGGCCTTGCCC ATTTCCGTTTCCAAA Pden_3857 989964 - 990845 + | binding-protein-dependent transport systems inner membrane component Pden_3858 990842 - 991888 + | ABC transporter related TERM 621 992056 - 992084 + G 73 -8 -4.10657 | gap 1, opp_overlap 992040 992051 992055 CCGCCGACAAGCCAG CGGGCGCCACGGC ACCA GCCAAG-CGCCCG TTTTCGCGAATGTCC Pden_3859 991961 - 992359 + | hypothetical protein TERM 622 993189 - 993199 + G 75 -8.2 -4.14472 | opp_overlap 993188 GGCGGTCGAGGAGAC GGGC ATC GCCC TTTTGCAACTCTTCC Pden_3860 992416 - 993522 + | NUDIX hydrolase Pden_3861 993557 - 994588 + | cysteine synthase A Pden_3862 994597 - 997089 + | MscS mechanosensitive ion channel Pden_3863 997086 - 997472 + | hypothetical protein Pden_3864 998539 - 997469 - | hypothetical protein Pden_3865 1001346 - 998605 - | DNA gyrase subunit A TERM 623 999631 - 999670 + g 70 -12 -3.25823 | gap 1, overlap 999630 CGACAGGCCCTTGCC GC-CGCGCCGCTGGGCGCG GAA CTCGGCCAGCGCCGTGCGC TTGATATAGCCGCCC Pden_3866 1001935 - 1001441 - | disulphide bond formation protein DsbB Pden_3867 1002584 - 1001988 - | DedA family protein Pden_3868 1002716 - 1003567 + | zinc metallopeptidase putative Pden_3869 1003926 - 1003738 - | hypothetical protein Pden_3870 1003986 - 1004438 + | cyclase/dehydrase Pden_3871 1005031 - 1004426 - | hypothetical protein Pden_3872 1006486 - 1005125 - | glutamate dehydrogenase TERM 624 1006723 - 1006692 - R 100 -20.9 -5.24129 | overlap 1006669 TGCTGCGACAAAAAA GACCGCCCGGCAC CTCCTC GCGCCGGGCGGTC CGCATGCGCCGGGGC Pden_3873 1008033 - 1006744 - | crotonyl-CoA reductase Pden_3874 1009139 - 1008225 - | hypothetical protein TERM 625 1008765 - 1008715 - G 70 -14.7 -2.70932 | gap 2, overlap 1008699 1008700 GCCCCGGCCGAACGA CCGCCAAGGGCC--ATCCGGCCCGG CGC CAGGCCCAGATCCGGCCCGTGGCGG TTCAGAAAGGCTGCG Pden_3875 1009234 - 1011300 + | methylmalonyl-CoA mutase, large subunit TERM 626 1011367 - 1011334 - T 95 -11.8 -4.20516 | gap 1, opp_overlap 1011334 TGGGTATTTAAGAAA CGGAAAGCACCTGGG AGGCG CCC-GGTTCTTTCCG TTTTACAAATACCCC TERM 627 1011334 - 1011367 + T 85 -11.8 -4.11216 | gap 1, opp_overlap 1011334 TGGGTATTTAAGAAA CGGAAAGCACCTGGG AGGCG CCC-GGTTCTTTCCG TTTTACAAATACCCC Pden_3876 1012304 - 1011399 - | hypothetical protein Pden_3877 1012906 - 1012304 - | uncharacterized peroxidase-related enzyme TERM 628 1012768 - 1012783 + g 70 -9 -3.86194 | AGGCCAGGAAGACGT TCGGGA CGAA TCCCGA TTTCTCGGCCACCTT TERM 629 1013010 - 1013056 + H 71 -7.9 -4.15222 | gap 2, overlap 1013013 1013017 GTCCCCGCGCCTTGC CGGGGATCGCCCCCCGTCAGCGC GTT GCGCCCACGGGGG-CG-TTACTG TTTATTCGCGCCCAT TERM 630 1013013 - 1013054 + H 71 -10.7 -3.6761 | gap 1, overlap 1013010 1013017 CCCGCGCCTTGCCGG GGATCGCCCCCCGTCAGCGC GTT GCGCCCACGGGGG-CGTTAC TGTTTATTCGCGCCC TERM 631 1013017 - 1013050 + H 86 -14.5 -3.54382 | gap 1, overlap 1013013 1013010 CGCCTTGCCGGGGAT CGCCCCCCGTCAGCGC GTT GCGCCCACGGGGG-CG TTACTGTTTATTCGC Pden_3878 1013103 - 1014599 + | signal recognition particle protein Pden_3879 1014604 - 1015134 + | GCN5-related N-acetyltransferase Pden_3880 1015131 - 1015481 + | chorismate mutase rpsP 1015531 - 1015905 + | 30S ribosomal protein S16 TERM 632 1016077 - 1016036 - g 82 -14.4 -3.77087 | gap 1, opp_overlap 1016029, overlap 1016028 CACCGAAGACGGAAA CCGCTCGTTCACCATCCGC CTGAC GCGGCCGGTG-ACGGGCGG GCTTGGCGCCCGGCT Pden_3882 1015905 - 1016408 + | 16S rRNA processing protein RimM Pden_3883 1016405 - 1017274 + | tRNA (guanine-N1)-methyltransferase rplS 1017271 - 1017651 + | 50S ribosomal protein L19 Pden_3885 1017663 - 1017884 + | ribosomal protein L31 TERM 633 1017910 - 1017929 + T 100 -16.4 -4.8622 | opp_overlap 1017910 1017904 TGCCGGAAATACGAA CGCCGCCC CGAA GGGCGGCG TTTTTCGTTGCGGCG TERM 634 1017929 - 1017910 - T 91 -16.4 -3.45571 | opp_overlap 1017910, overlap 1017904 TGCCGGAAATACGAA CGCCGCCC CGAA GGGCGGCG TTTTTCGTTGCGGCG Pden_3886 1018454 - 1018209 - | hypothetical protein Pden_3887 1018726 - 1019508 + | chromosome partitioning protein Pden_3888 1019578 - 1020747 + | Fis family transcriptional regulator Pden_3889 1020744 - 1023800 + | acriflavin resistance protein TERM 635 1023881 - 1023863 - T 100 -13.1 -6.31682 | opp_overlap 1023863 1023852 AAAACGAAAAAAAAA GGGGGCC GCGAA GGCCCCC TTGTCCGTTCGTTCT TERM 636 1023863 - 1023881 + T 78 -13.1 -3.45536 | opp_overlap 1023863, overlap 1023852 AAAACGAAAAAAAAA GGGGGCC GCGAA GGCCCCC TTGTCCGTTCGTTCT Pden_3890 1025210 - 1023906 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 637 1024546 - 1024580 + g 71 -9.9 -3.70773 | gap 1 GCTTCCGACAGGCGT GCGGCGATGGTGCGGC GCAT GCCGT-CCAGCGCCAC TTCTTCGGTCTCGCG TERM 638 1024866 - 1024917 + g 85 -17.8 -3.1996 | CGGGGCAGGGGCTGC GGCTGCCGCCGGTGCCGCGGCGGC CTCG GCCTTCGGGGCATCGGCCTCGGCC TTGGCTTCGGGTTTG Pden_3891 1026593 - 1025223 - | pyruvate dehydrogenase subunit beta TERM 639 1026480 - 1026500 + g 71 -9.7 -3.69354 | overlap 1026483 CTTGTCGGTTTCGAT TTCGGCGAT GAT GTCGCCGGA TTTCACGTTATCGCC TERM 640 1026622 - 1026638 + r 73 -9.3 -3.94188 | CAGGCGTTCGCTTCG GCGCCGC CCT GCGGCAC TTCTTTGGCATAGAT Pden_3892 1027637 - 1026606 - | pyruvate dehydrogenase (acetyl-transferring) Pden_3893 1028165 - 1027872 - | septum formation initiator Pden_3894 1029491 - 1028190 - | succinyl-diaminopimelate desuccinylase Pden_3895 1029595 - 1029876 + | hypothetical protein Pden_3896 1029887 - 1030546 + | hypothetical protein Pden_3897 1030550 - 1031494 + | deoxyribose-phosphate aldolase TERM 641 1032288 - 1032303 + G 72 -8.2 -4.06384 | overlap 1032291 GCTGACGCTGGAACT GGGCGG CAAG TCGCCC TTTGTCGTCTTGGAG Pden_3898 1031497 - 1033827 + | aldehyde dehydrogenase Pden_3899 1034666 - 1033911 - | hydroxypyruvate isomerase Pden_3900 1035214 - 1034669 - | hypothetical protein Pden_3901 1035276 - 1036277 + | ATPase Pden_3902 1036274 - 1037143 + | hypothetical protein TERM 642 1038827 - 1038853 + G 77 -11.4 -3.85698 | opp_overlap 1038794, overlap 1038834 CCGATTTCGCGCGCG GCCCGGCCCCGG GCG CTCCGGCCGGGC TTTATCGCGGCGGCG Pden_3903 1037143 - 1039062 + | hypothetical protein TERM 643 1039601 - 1039643 + G 71 -11.1 -3.59262 | CCGCGAGATCTGGGC CGAGGCGCCCCCGGCCG ATGCCCAGG CGGCCGAGGGCGTGCCG TTTCGCAATCTCAAC Pden_3904 1039059 - 1039898 + | hypothetical protein TERM 644 1041282 - 1041302 + G 84 -9.6 -4.4261 | CCCAGGTGGTGCTGA GCGGCGCG CGCGA CGAGCCGC TTTTGCTGTTCAGCC Pden_3905 1039895 - 1041997 + | hypothetical protein Pden_3906 1042009 - 1042554 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Pden_3907 1042547 - 1043332 + | UDP-N-acetylglucosamine acyltransferase Pden_3908 1043329 - 1044126 + | hypothetical protein Pden_3909 1044291 - 1045454 + | lipid-A-disaccharide synthase Pden_3910 1045779 - 1045429 - | endoribonuclease L-PSP Pden_3911 1046553 - 1045807 - | hypothetical protein TERM 645 1046639 - 1046665 + H 89 -19.4 -2.53876 | TGGGCCGGACATGGA TGCGCCCGGAGG CGG CCCCCGGGCGCA TGGCTTGCAATCGAA Pden_3912 1046946 - 1047236 + | hypothetical protein TERM 646 1047360 - 1047342 - T 77 -16 -2.65354 | overlap 1047338 1047339 GGGACGGCAAAGCCA GCCTCGCC GCG GGCGAGGC GCTTCGGAAAGCCGC Pden_3913 1048095 - 1047397 - | methyltransferase type 11 Pden_3914 1049406 - 1048159 - | hypothetical protein TERM 647 1049551 - 1049533 - R 100 -16 -4.90266 | TGCAGGAATGAAAAA GAGGGGGC CTT GCCCCCTC AGGCCCCAGGGGCCT TERM 648 1049612 - 1049600 - R 88 -2.6 -5.2696 | overlap 1049601 1049602 GGAAAACGGAAAAAA GCCG GGGCT CAGC TGCCGCGATAGGTCG Pden_3915 1049958 - 1049608 - | transthyretin Pden_3916 1051318 - 1049975 - | hydroxydechloroatrazine ethylaminohydrolase TERM 649 1050628 - 1050647 + g 79 -11.4 -4.07568 | overlap 1050631 CGTTTTCCGCCAGGT GGGTGTGC AGCC GCACGCCC TTTTCGCGGGCGAGG TERM 650 1051097 - 1051070 - G 74 -12 -3.65522 | gap 1 CAGCCAGCCGAACAA CGCCGCATCCTGC GCG GCAGG-CACGGCG CGGGTGAGCGTCTGG TERM 651 1051238 - 1051195 - G 90 -17.4 -3.53012 | overlap 1051197 1051198 CGCCTTCGGCGGAAA GACCCGGACCGACGGCGGAG ATGA CCCCGCCGTCGATCAGGATG TCGCCGCCTGCGATC TERM 652 1051236 - 1051197 - G 91 -20 -3.34398 | overlap 1051195 1051198 CCTTCGGCGGAAAGA CCCGGACCGACGGCGGAG ATGA CCCCGCCGTCGATCAGGA TGTCGCCGCCTGCGA TERM 653 1051235 - 1051198 - G 85 -21.3 -2.60496 | overlap 1051197 1051195 CTTCGGCGGAAAGAC CCGGACCGACGGCGGAG ATGA CCCCGCCGTCGATCAGG ATGTCGCCGCCTGCG Pden_3917 1052799 - 1051318 - | uracil-xanthine permease TERM 654 1052667 - 1052632 - G 100 -12.4 -4.98531 | overlap 1052653 GGCGGAAATCAAAAA GGCCACGTCTTGCGGC GAAA GCTGCAGGGCGCGGCC GACGATCAGCGGCAC Pden_3918 1053803 - 1052841 - | ornithine cyclodeaminase TERM 655 1053234 - 1053204 - G 74 -14 -3.35438 | CAGCAGAGGCGAGAA GGACGAGGTGATCG AGA CGATCACGTCGGCC TCGGCCCCAAGCCGG TERM 656 1053757 - 1053778 + g 78 -10.1 -4.19735 | opp_overlap 1053731 GCCTCGAAGGCCGCC TCGGGGGTC ATCA GACCCGCGA TTTCCTTTTCGGCGA Pden_3919 1054966 - 1053803 - | alanine racemase domain-containing protein Pden_3920 1055935 - 1054988 - | pyridoxal-5'-phosphate-dependent enzyme, beta subunit Pden_3921 1057140 - 1055950 - | Serine--glyoxylate transaminase TERM 657 1056621 - 1056605 - G 71 -10.9 -3.57144 | overlap 1056618 TCGTCCATGCGGAAA TCCATCG AAC CGATGGA GGAGACCCCGTCCAC Pden_3922 1057325 - 1058164 + | regulatory proteins, IclR TERM 658 1058536 - 1058575 + G 70 -3.6 -4.42653 | gap 3 TCGAGACCTATCGTG CCGCCGG-GGCGCTGCATG CCGCC CAT-C-GCGATGCCGGCGG TTTTCTGGATGCGGT TERM 659 1059091 - 1059108 + G 72 -3.3 -4.56597 | overlap 1059064 1059092 GCGCGCCGGATCGCG ACGTGGC GCTG GCCATGC TTTTTGGCGAACGGC Pden_3923 1058292 - 1060046 + | hypothetical protein TERM 660 1060054 - 1060088 + F 88 -17.2 -3.05384 | gap 1 GTGACTGACGATCCG GTAGCCCGGGGGCGG AGGCAG CCGCCTCCGGGC-AC TTGACTGGCGGCAAG Pden_3924 1060135 - 1060851 + | pentapeptide repeat-containing protein Pden_3925 1062450 - 1060864 - | SARP family transcriptional regulator TERM 661 1061086 - 1061074 - G 71 -10.5 -3.75153 | opp_overlap 1061072 1061077 CGGGGCGAAGGCAAA GGCCG CGG CGGCC GAGTTCTCGGCATCG TERM 662 1061643 - 1061678 + g 82 -14.1 -3.72576 | gap 1, overlap 1061601 GGTCGAGCAGCGCCA CCGCGATC-TGTGCCA CGGCA TGGCGCATGGTCGCGG TTTCGTCGGCGGCGC TERM 663 1063268 - 1063307 + G 73 -12.1 -3.40403 | overlap 1063294 GGGCTCGACTGGAAC GCGCCTGCGCCCTTCG-GC ATGG GCACGCTGGGC-CAGGCGC TTCTGGTCCCGACCC Pden_3926 1062638 - 1063684 + | phosphoribosylaminoimidazole synthetase Pden_3927 1063681 - 1064277 + | phosphoribosylglycinamide formyltransferase TERM 664 1064283 - 1064298 + T 72 -8.2 -4.06179 | opp_overlap 1064283, overlap 1064275 CGCGGCGTGAAAAAA GGCGCG GACA TGCGCC TTTCTCCGTTTTCCA TERM 665 1064298 - 1064283 - T 95 -7.5 -5.00616 | opp_overlap 1064275 1064283 CGCGGCGTGAAAAAA GGCGC GGACAT GCGCC TTTCTCCGTTTTCCA Pden_3928 1065699 - 1064359 - | inner-membrane translocator Pden_3929 1066716 - 1065715 - | inner-membrane translocator Pden_3930 1067429 - 1066719 - | ABC transporter related Pden_3931 1068334 - 1067429 - | ABC transporter related TERM 666 1067456 - 1067502 + g 95 -18.7 -3.54424 | gap 1, overlap 1067455 1067500 CGCTGGCTTGCCGTC GCCGCCGCGCCCGGCCTCGG CGCCAAGA CCG-GGCTGGGCGCCGTGGC TTTCGCCGAATGCGG TERM 667 1068076 - 1068047 - G 72 -5.7 -4.2828 | gap 1 GGTCATCGACGAAAA CTCGTGCGCCAACT GGA AGGTG-CGCAGGAG CCCCTTGTGGAACAG TERM 668 1068318 - 1068340 + g 70 -9.2 -3.84719 | ATCATAGCGCTCCCC TGCTTCATGC GTT GCATGAAGAA TTTCCCTTTCGGGAT TERM 669 1068343 - 1068354 + r 76 -5.8 -4.56187 | opp_overlap 1068342 GTTGCATGAAGAATT TCCC TTTC GGGA TTGTTTTTAATTATG TERM 670 1068393 - 1068374 - R 90 -11.4 -4.3534 | opp_overlap 1068374, overlap 1068368 TTTTAATTATGAAAA GGGCCCGA AAAA TCGGACCC TTTCCCCGGCTTGCG Pden_3932 1069597 - 1068413 - | extracellular ligand-binding receptor Pden_3933 1070734 - 1069721 - | AraC family transcriptional regulator TERM 671 1070445 - 1070410 - G 70 -12.4 -3.33492 | opp_overlap 1070441, overlap 1070411 GCAGCCAGGCCAGAA CCGGCCTCGTCGCGGC CCGC GCCACGTCGAGCCCGC CGCAGACCAGCACCG TERM 672 1070444 - 1070411 - G 73 -15.9 -2.59881 | opp_overlap 1070441, overlap 1070410 CAGCCAGGCCAGAAC CGGCCTCGTCGCGGC CCGC GCCACGTCGAGCCCG CCGCAGACCAGCACC TERM 673 1071017 - 1071065 + G 72 -13.8 -3.21099 | opp_overlap 1071033 1071034 GGTCTTTGCCGGCGA GGCGCG-CCGCCTGAAAGCCTCGC TGG GCGAGG-TCGCGGCCGGCCGCGCC TTCCTGCTGCAGGGC Pden_3934 1070820 - 1072262 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 674 1072284 - 1072311 + T 100 -15.5 -4.72272 | opp_overlap 1072283 1072282 GCAAGCCGGAGAATT GGGCGGCTGGG CTTGGA CCCCGCCGCCC TTTTTCATGCCCGCC Pden_3935 1073130 - 1072372 - | hypothetical protein TERM 675 1073251 - 1073230 - H 100 -18.7 -4.15106 | GACCAATGGTTAAAA CCCCGCCCG CCGC CGGGCGGGG CTTGACCCTGCTGGC Pden_3936 1073313 - 1073951 + | guanylate kinase Pden_3937 1073948 - 1074475 + | transferase hexapeptide protein Pden_3938 1074472 - 1075524 + | PAS/PAC sensor signal transduction histidine kinase TERM 676 1075580 - 1075558 - T 100 -14.1 -5.22039 | opp_overlap 1075558 GCGAAAGCGAAAAAA GCCGGGAGC ATCGA GCCCCCGGC TTTTTTATGGCCCCG TERM 677 1075558 - 1075580 + T 100 -11.9 -5.24129 | opp_overlap 1075558 GCGAAAGCGAAAAAA GCCGGGAGC ATCGA GCCCCCGGC TTTTTTATGGCCCCG Pden_3939 1077114 - 1075615 - | amidophosphoribosyltransferase TERM 678 1076371 - 1076344 - G 82 -14.8 -3.42503 | CTCGAAGATGCAGAA GCGCCCCGTCGA GGGA CCGAAGGGGCGC GAGGACTCGATCTCG TERM 679 1077191 - 1077215 + r 100 -9.1 -4.96848 | opp_overlap 1077170 1077188 1077192, overlap 1077192 CAGGCGGACGAAGTC ACGCCCCACGG CCA TCGCGGGGCGC TTTTTATGTCACAAA TERM 680 1077192 - 1077214 + r 77 -12.6 -3.57627 | opp_overlap 1077170 1077188 1077192, overlap 1077191 AGGCGGACGAAGTCA CGCCCCACGG CCA TCGCGGGGCG CTTTTTATGTCACAA TERM 681 1077214 - 1077192 - R 70 -14.1 -2.56715 | opp_overlap 1077192 1077191, overlap 1077170 1077188 AGGCGGACGAAGTCA CGCCCCACG GCCAT CGCGGGGCG CTTTTTATGTCACAA Pden_3940 1077856 - 1077245 - | colicin V production protein Pden_3941 1079264 - 1077900 - | DNA repair protein RadA Pden_3942 1080603 - 1079413 - | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 682 1080007 - 1080028 + g 70 -3.5 -4.42386 | GTGCGGGCGTTCATG GGTGACGGC GAAG GCCAGCGCC TTTTGTCCGTAGCGC Pden_3943 1081543 - 1080857 - | pyrimidine 5'-nucleotidase TERM 683 1081487 - 1081474 - G 72 -3.7 -4.57569 | CGATCTGGGCAAAAA GCCTG ACCT CGGGC GCATAAAGCGTGTTG Pden_3944 1081609 - 1082244 + | GntR family transcriptional regulator Pden_3945 1082244 - 1082867 + | HhH-GPD family protein Pden_3946 1082878 - 1083537 + | phospholipase/carboxylesterase Pden_3947 1084216 - 1083740 - | glyoxalase/bleomycin resistance protein/dioxygenase Pden_3948 1084256 - 1084576 + | small multidrug resistance protein TERM 684 1084971 - 1085003 + G 79 -2.5 -4.82901 | opp_overlap 1084978, overlap 1084973 1084974 1084978 AAGACTTCGTCAAAC CCCAGAAGCGCGTGG CAT TCACGCGCTTCAATC TTTTTCTGCGGGACG TERM 685 1084973 - 1085001 + G 75 -9.5 -4.03995 | opp_overlap 1084978, overlap 1084971 1084974 1084978 GACTTCGTCAAACCC CAGAAGCGCGTGG CAT TCACGCGCTTCAA TCTTTTTCTGCGGGA TERM 686 1084978 - 1084996 + G 70 -12.4 -3.34439 | opp_overlap 1084978, overlap 1084974 1084973 1084971 CGTCAAACCCCAGAA GCGCGTGG CAT TCACGCGC TTCAATCTTTTTCTG TERM 687 1085243 - 1085271 + G 71 -3 -4.57353 | overlap 1085244 GGCCGGCGCTTCCCG CCCAACCATCTG CACGA CAGCTGGATGGA TTTTCTCTACTGGGA Pden_3949 1084712 - 1085308 + | HNH endonuclease Pden_3950 1085439 - 1085807 + | hypothetical protein TERM 688 1085814 - 1085846 + F 100 -12 -4.64676 | opp_overlap 1085813 1085810 GCCGCGTAACACCAT GGCGAAGG-GGCGGCG ATT CGC-GCCGCCTGCGCC TTTTCTTCCGGCTGG Pden_3951 1086199 - 1087281 + | radical SAM domain-containing protein Pden_3952 1088241 - 1087282 - | methionine synthase I TERM 689 1087601 - 1087568 - G 71 -11 -3.54424 | CCCGAGGCGGCGAAA CCGGCCACCGCC-AGC AGCA GCTCGGCCG-GGCCGG TGCCGCAATTCGCGC Pden_3953 1089349 - 1088330 - | tryptophanyl-tRNA synthetase Pden_3954 1089460 - 1090173 + | rhomboid family protein Pden_3955 1091708 - 1090164 - | integral membrane protein MviN TERM 690 1090435 - 1090419 - G 82 -15.1 -3.53012 | GGCCGCCTCGCCAAA GGCGCGG GTG CCGCGCC AGAGCTGCGCGGCCA Pden_3956 1094529 - 1091719 - | PII uridylyl-transferase TERM 691 1091780 - 1091792 + g 82 -3.3 -5.00884 | ACCCCTTCCTTGATC GCCTG CCG CAGCC TTTTTTCCAGCGCCT TERM 692 1094496 - 1094471 - G 72 -13.2 -3.1855 | opp_overlap 1094472, overlap 1094466 GGGCTGAACAGCGAA TGCGCCCCGG GCAGGG CCGGGGCGCT TTGCGGCAGGCTGTC TERM 693 1094472 - 1094495 + g 85 -16.7 -3.53563 | opp_overlap 1094471 1094466 GGCTGAACAGCGAAT GCGCCCCGG GCAGGG CCGGGGCGC TTTGCGGCAGGCTGT Pden_3957 1095734 - 1094532 - | hypothetical protein Pden_3958 1095839 - 1096747 + | uroporphyrin-III C/tetrapyrrole methyltransferase Pden_3959 1096744 - 1097157 + | hypothetical protein Pden_3960 1097346 - 1098296 + | glutathione synthetase Pden_3961 1099953 - 1098421 - | Mg chelatase, subunit ChlI TERM 694 1100360 - 1100393 + G 75 -9.5 -4.07568 | gap 1, overlap 1100352 CTGGGGCGGATGGCG GCAGGGATGGCGGACG ACC TGGCCACCA-CCCTGC TTTTGGCGACCGACA Pden_3962 1100033 - 1101343 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 695 1102174 - 1102208 + G 74 -12 -3.61517 | overlap 1102176 GTGATGCAGATGGAC CTGGCCGGATTTGCCG TCT CGGCAGGCTCGGCCTG TTCTTCGGGCAAGGT TERM 696 1102176 - 1102206 + G 74 -13.2 -3.38812 | overlap 1102174 GATGCAGATGGACCT GGCCGGATTTGCCG TCT CGGCAGGCTCGGCC TGTTCTTCGGGCAAG Pden_3963 1101340 - 1102407 + | cysteine desulfurase Pden_3964 1102409 - 1103935 + | cysteine desulfurase activator complex subunit SufB Pden_3965 1103932 - 1104243 + | hypothetical protein Pden_3966 1104253 - 1105008 + | FeS assembly ATPase SufC Pden_3967 1105008 - 1106354 + | SufBD protein Pden_3968 1106351 - 1106839 + | hypothetical protein TERM 697 1107255 - 1107265 + G 87 -8.2 -4.67563 | overlap 1107252 GCTGCTTTCCATGCT GGCC TTC GGCC TTTTCCTTTATCTTG Pden_3969 1106836 - 1107423 + | hypothetical protein TERM 698 1107695 - 1107677 - g 74 -13.2 -3.28712 | CGCCCCGCGCGAGAA CGAGGTGA TCT TCACCTCG GGCGCGACCGAAGGA TERM 699 1107949 - 1107999 + G 70 -12.6 -3.28791 | gap 3 ATATGTCGAACGTGA CCGGCACCGTGGTCGATGTCG-GCG CCAT CGCACG-CGGC-ACCTCGGTGCCGG TTCTGGCCGACGGGT Pden_3970 1107420 - 1108631 + | SufS subfamily cysteine desulfurase TERM 700 1108842 - 1108818 - T 90 -15.7 -3.45366 | opp_overlap 1108818 TCGCGAAGGAATGAA GCCCCGCTCAT GGC AGGAGCGGGGC TTGGGTTCGGCTGCG TERM 701 1108818 - 1108842 + T 86 -15.7 -3.18274 | opp_overlap 1108818 TCGCGAAGGAATGAA GCCCCGCTCAT GGC AGGAGCGGGGC TTGGGTTCGGCTGCG TERM 702 1109034 - 1109007 - T 100 -19.2 -4.21194 | TCGGAGCATGGAAAA CCCGGCACTCGC GGGT GCGAATGCCGGG TGCGTAAAGATTCAG Pden_3971 1111228 - 1109057 - | phosphoribosylformylglycinamidine synthase II TERM 703 1109206 - 1109165 - G 76 -14.3 -3.53012 | gap 1, overlap 1109166 CGCTTCGCCGCCAAA CCGGCCCACGCGCGCCAGCG GCA CGCCCGC-CGCCTGGGCCGC CTCGACCAGTTGCGC TERM 704 1109205 - 1109166 - G 78 -17.8 -2.71712 | gap 1, overlap 1109165 GCTTCGCCGCCAAAC CGGCCCACGCGCGCCAGCG GCA CGCCCGC-CGCCTGGGCCG CCTCGACCAGTTGCG TERM 705 1111357 - 1111339 - R 100 -13.1 -5.77853 | AATGGGTAAAAAAAA GCCGGGC ACGAA GCCCGGC TCAAGTCCAACAGGG TERM 706 1111499 - 1111525 + r 93 -18 -3.58269 | GTTGTGCGAATGCCT CGGGCAGAGGCC GGC GGCATCTGCCCG TTTGGCGCTCACTTA Pden_3972 1112475 - 1111534 - | LysR family transcriptional regulator TERM 707 1112422 - 1112385 - G 75 -8.3 -4.13014 | gap 1 GGGACAGGTGCAAAA CATCGCCCGCGTGGGTCA GGC TG-CCCGCGTCGGCGACG GCGTGAAATATTCTT Pden_3973 1112959 - 1113771 + | glutamate racemase Pden_3974 1113790 - 1114233 + | cytochrome c-type biogenesis protein CcmE Pden_3975 1114309 - 1114920 + | hypothetical protein TERM 708 1115234 - 1115264 + G 81 -3.3 -4.86731 | CCTCGTGCCCGAGCC GCT-CTGGTGGCTGC TGG GC-GCCATCATCAGC TTTTATTTCGGCGCG Pden_3976 1114911 - 1115441 + | hypothetical protein TERM 709 1115458 - 1115496 + F 70 -11.6 -3.40403 | gap 1, opp_overlap 1115457 1115456, overlap 1115459 AATGCTGTGACAATC TGGCAGGCGCGGGGGGC TGGCTT GCCGCCCGCGCC-GCGG TTATCCTGCGGGGCA Pden_3977 1115530 - 1117491 + | cytochrome c-type biogenesis protein CcmF Pden_3978 1117495 - 1117947 + | cytochrome C biogenesis protein Pden_3979 1118017 - 1118787 + | enoyl-CoA hydratase/isomerase Pden_3980 1119541 - 1118822 - | NUDIX hydrolase Pden_3981 1119963 - 1119544 - | hypothetical protein Pden_3982 1121462 - 1120068 - | response regulator receiver modulated diguanylate cyclase TERM 710 1121568 - 1121540 - H 75 -3.7 -4.63218 | overlap 1121541 CGGCCGCGAAGAAAA TCGCCCCGGCCTT CAC AAGAGCGAGACGC GGATGACACCGAACG Pden_3983 1121571 - 1121840 + | hypothetical protein Pden_3984 1123220 - 1121859 - | aminotransferase class-III Pden_3985 1124807 - 1123458 - | cytochrome P450 Pden_3986 1126003 - 1124804 - | hypothetical protein Pden_3987 1126743 - 1126057 - | peptidase M48, Ste24p Pden_3988 1127952 - 1126771 - | VWA containing CoxE family protein Pden_3989 1128237 - 1129361 + | Ppx/GppA phosphatase Pden_3990 1129363 - 1130133 + | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 711 1130144 - 1130169 + T 71 -13.9 -2.71712 | overlap 1130143 CATGAGGATCGGGAA GGCGCCGGGCC GGGC GGCCCGCTGCC GTTTCCGCCCGCAGA Pden_3991 1131376 - 1130270 - | helix-turn-helix domain-containing protein Pden_3992 1132412 - 1131504 - | tRNA delta(2)-isopentenylpyrophosphate transferase Pden_3993 1132498 - 1133232 + | uridylate kinase Pden_3994 1133313 - 1133876 + | ribosome recycling factor Pden_3995 1133880 - 1134614 + | undecaprenyl diphosphate synthase Pden_3996 1134611 - 1135465 + | phosphatidate cytidylyltransferase Pden_3997 1135470 - 1136642 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Pden_3998 1136639 - 1137964 + | putative membrane-associated zinc metalloprotease TERM 712 1139244 - 1139267 + G 83 -5.2 -4.8667 | gap 1 GAGATCCGCAATTCG GCCGAACG-GC TGC GCGCGCTTGGC TTTTTCTCGGATGTG Pden_3999 1138068 - 1140416 + | surface antigen (D15) Pden_4000 1140416 - 1141195 + | outer membrane chaperone Skp (OmpH) Pden_4001 1142164 - 1141217 - | purine nucleosidase Pden_4002 1144681 - 1142225 - | penicillin amidase Pden_4003 1144811 - 1145677 + | 3-hydroxyisobutyrate dehydrogenase TERM 713 1145892 - 1145865 - T 72 -9 -4.07568 | overlap 1145866 GGTGTTTGCCGAAAA TGCCACGCCCTG CGGT CAGGGGGCGGCG ACGCCGCGCGCGCCG Pden_4004 1146531 - 1145983 - | hypothetical protein Pden_4005 1146753 - 1146544 - | hypothetical protein TERM 714 1146930 - 1146946 + H 85 -5.1 -5.03314 | TCTGGTTTTGGCGAA GACGGTT TGC AACGGTC TTTTTTGCCGGTGCC TERM 715 1147021 - 1147000 - H 75 -7.9 -4.30014 | gap 1, overlap 1147001 CGCAGCAATCGAAAA GCC-CGGCCG GTC CGTCCGCGGC GGGATGGGCAAGTCG Pden_4006 1147245 - 1148897 + | major facilitator transporter Pden_4007 1150926 - 1148956 - | integral membrane sensor signal transduction histidine kinase TERM 716 1149599 - 1149627 + g 71 -3 -4.59773 | overlap 1149601 ATCTCATGCGCGATG CCGGCCGATATT TCGCC AAGAGCGGCCAG TTTTTCGGACTGGAC Pden_4008 1152289 - 1150919 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 717 1151964 - 1151937 - G 71 -9.9 -3.78775 | gap 1, opp_overlap 1151946 1151957 GGCTTCAGCAGGAAA TCCGAGGCGCCG GCCTG CAGCGCCT-GGA TGGCGGTTTCCAGAT TERM 718 1152027 - 1152017 - G 83 -8.2 -4.56597 | CGCGGGCGGGAAAAA GCCC TGC GGGC GCTGTTCGCGCAGCC Pden_4009 1152491 - 1154755 + | oxidoreductase alpha (molybdopterin) subunit Pden_4010 1154774 - 1156177 + | cytochrome bd ubiquinol oxidase, subunit I Pden_4011 1156179 - 1157183 + | cytochrome d ubiquinol oxidase, subunit II TERM 719 1158640 - 1158615 - g 72 -6.7 -4.26019 | overlap 1158616 1158618 GAAGTACATCGAAAA GGACGCCGCGC TGGA GCACCGCTTCC AGCCGGTGCTGGTGC TERM 720 1159162 - 1159131 - g 77 -4.3 -4.70319 | GGAGGAAAAGGAAAA GCTGTTGCAGATG GAGGAG CGGCTGCATCAGC GCGTCATCGGCCAGG Pden_4012 1157362 - 1160223 + | ATPase TERM 721 1160423 - 1160391 - g 74 -15.6 -3.05384 | gap 1 CTGCCCCTGACCGAA GGCGGCAGCGACGCC CAAC GGCATCGC-ACCGCC GTCGTGGCGATCATC Pden_4013 1160292 - 1160924 + | multiple antibiotic resistance (MarC)-related proteins Pden_4014 1160987 - 1162009 + | Dyp-type peroxidase family protein Pden_4015 1162011 - 1162808 + | Linocin_M18 bacteriocin protein Pden_4016 1162815 - 1163705 + | hypothetical protein Pden_4017 1164011 - 1165297 + | ABC branched chain amino acid transporter, substrate binding protein TERM 722 1165307 - 1165327 + F 77 -12.5 -3.59979 | TACTGACCGGCTTTC GGGGGCGGT GCA GCCGCCCTC TTTCGCCTCAAGACG Pden_4018 1165346 - 1167265 + | inner-membrane translocator Pden_4019 1167267 - 1168502 + | inner-membrane translocator Pden_4020 1168499 - 1169239 + | ABC transporter related Pden_4021 1169243 - 1169950 + | ABC transporter related Pden_4022 1170462 - 1171013 + | redoxin domain-containing protein Pden_4023 1171014 - 1171697 + | phosphoglycolate phosphatase Pden_4024 1171756 - 1172226 + | hypothetical protein TERM 723 1174138 - 1174116 - g 72 -13.4 -3.20367 | CAAGAAGCTGACCAA CGTGCGTGCC TCG GGCACGGACG AGGCGGTGCGCCTGA Pden_4025 1172479 - 1174299 + | GTP-binding protein TypA Pden_4026 1174385 - 1175020 + | hypothetical protein TERM 724 1175039 - 1175014 - T 75 -6.8 -4.41494 | overlap 1174995 1175016 CACGGCCAAGGAAAA GGCCTGAGCG CCGCCC CGCTCAGATC TGGCGTTCGGGCAGG Pden_4027 1175356 - 1175033 - | ferredoxin Pden_4028 1177040 - 1175481 - | exodeoxyribonuclease VII, large subunit TERM 725 1176076 - 1176022 - G 82 -13.4 -3.72576 | overlap 1176056 CGGGCGCGCACGAAA CCGCGCAGCGCCGGTTCCAGCCGCTC GGC GAACAGGTCGAACCGCTGCCGCGCCG GGGCGGTCAGCGCCT Pden_4029 1177155 - 1178417 + | phosphoribosylamine--glycine ligase TERM 726 1178467 - 1178503 + F 86 -14.5 -3.53012 | gap 1, opp_overlap 1178466 1178463 TGAAGAACGAAGAAG TCCG-GGGGGCGGTGC GGGGCG GCATCGCCCCTGCGGA TTTCGGGGCGGGAAA Pden_4030 1178755 - 1180317 + | 2-isopropylmalate synthase TERM 727 1180340 - 1180361 + T 86 -14.4 -3.75153 | opp_overlap 1180340 1180330 CGAAACCACGGACAA GGGGCGGC GCTCAG GCCGCCCC TTTGCGTTCCACGAA TERM 728 1180361 - 1180340 - T 80 -14.4 -3.41053 | opp_overlap 1180340, overlap 1180330 CGAAACCACGGACAA GGGGCGGC GCTCAG GCCGCCCC TTTGCGTTCCACGAA Pden_4031 1181189 - 1180350 - | hypothetical protein TERM 729 1181058 - 1181024 - G 78 -12 -3.68619 | CCGAAGGCAGGCAAA GCGCCTCGAACGCGGC AAA GCGGCGCTCCAGCCGC TCGGGCGCGTAAAGC TERM 730 1181839 - 1181802 - g 75 -10.4 -4.07885 | CACGCCGGTCGAAAA GCGCGCCATCCGCCAG TCGGTG CTGTCGGCCGGGGCGC GCCGCGCCGGGCTGA Pden_4032 1181383 - 1182483 + | cell shape determining protein MreB TERM 731 1182823 - 1182808 - g 72 -6.8 -4.30576 | GCTCGAGCAGGAAAA CGCCAA GCTG CTGGCG CAGAACAATGTGAGG Pden_4033 1182497 - 1183429 + | rod shape-determining protein MreC Pden_4034 1183422 - 1183952 + | putative rod shape-determining protein MreD TERM 732 1184754 - 1184726 - g 82 -16.1 -3.28712 | TGCGGGCCTGCAGAA TTTCGCCACCCAG CGG CTGGGCAGCGAAA GCGCCGCCGCGGTGG TERM 733 1185641 - 1185654 + G 70 -3.7 -4.46493 | overlap 1185642 ACTGCCCTGGAACCG CCGCG ACCA CGCGC TTTTCGTCTGTTTCG Pden_4035 1183956 - 1185899 + | peptidoglycan glycosyltransferase Pden_4036 1185903 - 1187045 + | rod shape-determining protein RodA Pden_4037 1187055 - 1187975 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_4038 1188106 - 1189533 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Pden_4039 1189606 - 1190637 + | ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA Pden_4040 1190693 - 1191298 + | hypothetical protein Pden_4041 1191634 - 1191308 - | arsenate reductase and related Pden_4042 1193100 - 1191781 - | hypothetical protein TERM 734 1192106 - 1192117 + g 73 -7.2 -4.10855 | overlap 1192104 1192111 CTGCGGTCCAGCATG GCGG CCAG CCGC TTTTCGGCCGATTTT Pden_4043 1193259 - 1193768 + | ErfK/YbiS/YcfS/YnhG family protein TERM 735 1194110 - 1194072 - g 72 -6.8 -4.37886 | overlap 1194092 GGATTTGCGACAAAA TGTCC-TGCGCCGCGAAG ATACG CCT-GTGGCGCATGGACA ATCCTCGACCCCGGC Pden_4044 1193832 - 1195346 + | NnrS family protein TERM 736 1195958 - 1195994 + G 72 -14.3 -3.14132 | CCCGGATCGCGAACG GGCGAGCATCGCGGCGG GGG CCGTCGCCCTGCTGGCC TTCCTGCCCGGCACC Pden_4045 1195503 - 1196720 + | chromate transporter Pden_4046 1196881 - 1197174 + | hypothetical protein TERM 737 1197193 - 1197224 + T 84 -17.4 -2.75343 | opp_overlap 1197200, overlap 1197200 ACCCGGCCGGGCCAA GAAAAAAGCGGGCC GTTC GGCCCGCTTTCTTC GTTTCGCGCTGTCCG TERM 738 1197200 - 1197217 + T 100 -14.1 -4.39696 | opp_overlap 1197200, overlap 1197193 CGGGCCAAGAAAAAA GCGGGCC GTTC GGCCCGC TTTCTTCGTTTCGCG TERM 739 1197217 - 1197200 - T 100 -14.1 -5.4505 | opp_overlap 1197193 1197200 CGGGCCAAGAAAAAA GCGGGCC GTTC GGCCCGC TTTCTTCGTTTCGCG Pden_4047 1198684 - 1197245 - | NAD(P) transhydrogenase, beta subunit pntA 1200272 - 1198698 - | NAD(P) transhydrogenase subunit alpha Pden_4049 1201048 - 1200368 - | hypothetical protein Pden_4050 1201466 - 1201059 - | isoprenylcysteine carboxyl methyltransferase TERM 740 1201418 - 1201388 - G 100 -22.6 -4.30576 | CCCCGATCAGCAAAA GGCCCGCCCATCGC AAG GCGACGGGCAGGCC CAGCGGGACCAGCCA Pden_4051 1203649 - 1201502 - | malate synthase G TERM 741 1203799 - 1203772 - R 100 -16.2 -4.4267 | overlap 1203773 1203789 CGGGAAAATTGAAAA TCCGCCGCCCGG AAAA CCGGACGGCGGC ACGCACCCGCATGGG TERM 742 1203798 - 1203773 - R 100 -19.7 -3.24879 | overlap 1203772 1203789 GGGAAAATTGAAAAT CCGCCGCCCGG AAAA CCGGACGGCGG CACGCACCCGCATGG Pden_4052 1204523 - 1203819 - | mucin-associated surface protein TERM 743 1206388 - 1206445 + G 95 -18.3 -3.55071 | gap 1, overlap 1206389 CGGCGGCGAAGGCGG CGCCGAGTTCGGCCGCGCCATCGGCGGG TTG CTCGACGATGCCGAGGCCGACC-CGGCC TTTGCCGCGCTCTGC TERM 744 1206389 - 1206444 + G 86 -21.8 -2.72829 | gap 1, overlap 1206388 GGCGGCGAAGGCGGC GCCGAGTTCGGCCGCGCCATCGGCGGG TTG CTCGACGATGCCGAGGCCGACC-CGGC CTTTGCCGCGCTCTG Pden_4053 1204691 - 1207234 + | aminopeptidase N Pden_4054 1207252 - 1208193 + | phospholipid/glycerol acyltransferase TERM 745 1208243 - 1208295 + T 93 -18.6 -3.66018 | gap 2, opp_overlap 1208243 1208247 1208251, overlap 1208250 TGAGTATTTATGGAA CGAAGAAACCCGGTGCCGC--GCTGA ATT TCGGGAAGCGGCACCGGGCTTCTTCG TTCTTCAAATACTCA TERM 746 1208295 - 1208243 - T 93 -19.3 -3.08464 | opp_overlap 1208243 1208250, overlap 1208247 1208251 TGAGTATTTATGGAA CGAAGAAACCCGGTGCCGCGC TGAATTTCGGG AAGCGGCACCGGGCTTCTTCG TTCTTCAAATACTCA TERM 747 1208291 - 1208247 - T 77 -12.9 -3.3782 | opp_overlap 1208243 1208250, overlap 1208243 1208251 TATTTATGGAACGAA GAAACCCGGTGCCGCGC TGAATTTCGGG AAGCGGCACCGGGCTTC TTCGTTCTTCAAATA TERM 748 1208287 - 1208251 - T 88 -10.1 -4.33621 | opp_overlap 1208250 1208243, overlap 1208247 1208243 TATGGAACGAAGAAA CCCGGTGCCGCGC TGAATTTCGGG AAGCGGCACCGGG CTTCTTCGTTCTTCA Pden_4055 1209458 - 1208346 - | gamma-glutamyl kinase TERM 749 1208949 - 1208991 + g 72 -15.5 -2.82623 | opp_overlap 1208946 1208949, overlap 1208945 CGAGAGCAGCAAGAG CTGGTCGGCGCCGCAGGTC ACGGC GATCTGCGCCGCCAGCCGG TCGTTGTCGCCGAAG obgE 1210477 - 1209446 - | GTPase ObgE Pden_4057 1210622 - 1210960 + | small multidrug resistance protein Pden_4058 1211023 - 1212438 + | hypothetical protein Pden_4059 1212457 - 1213239 + | endonuclease/exonuclease/phosphatase Pden_4060 1213306 - 1214583 + | phosphopyruvate hydratase TERM 750 1214608 - 1214628 + T 100 -15.4 -4.34402 | GATCGGAACGCTGAA GGGCGGCC CCGGT GGCCGCCC TTTTCATATCCACCA Pden_4061 1215447 - 1214632 - | hypothetical protein Pden_4062 1217066 - 1215444 - | alpha-isopropylmalate/homocitrate synthase family transferase Pden_4063 1218487 - 1217099 - | cysteinyl-tRNA synthetase TERM 751 1217483 - 1217522 + g 72 -8.4 -4.09685 | gap 1, opp_overlap 1217482 1217483 GACGCCGGCGACAAG GCCGCGCCAGCGGCGCAGC ACG GCTTCGGC-CTCGCGCGCC TTTTCGGCCGTCCAG Pden_4064 1218643 - 1218984 + | hypothetical protein TERM 752 1219016 - 1218991 - T 100 -18.3 -4.25104 | overlap 1219009 TCCTTGTGACGAAAA TGGCCGGCCCC CGAA GGAGCCGGCCA GAGGCGAAGGGCCGA Pden_4065 1219508 - 1219068 - | hypothetical protein Pden_4066 1220746 - 1219607 - | ABC transporter related Pden_4067 1221549 - 1220743 - | binding-protein-dependent transport systems inner membrane component Pden_4068 1222415 - 1221546 - | binding-protein-dependent transport systems inner membrane component TERM 753 1222466 - 1222495 + r 78 -15.9 -2.71144 | gap 1, overlap 1222457 1222456 AGGTTTCCATATCCG CGCCGCGAGGAAAA GGG TTTTCCT-GCGGCG TGGTTGACCGGCCTC Pden_4069 1222934 - 1222509 - | hypothetical protein Pden_4070 1224445 - 1222931 - | hypothetical protein TERM 754 1222984 - 1222994 + g 75 -8.2 -4.18018 | CGCCGTCATGGTCCA GCGC GAT GCGC TTTTGCGTGCGCGCG Pden_4071 1224537 - 1225085 + | NADPH-dependent FMN reductase TERM 755 1225107 - 1225128 + T 100 -14.4 -5.1675 | opp_overlap 1225107 CCGCAGAATGACAAA GGCCGCGC CCGGAA GCGCGGCC TTTTTTGGTCGATCC TERM 756 1225128 - 1225107 - T 95 -15.1 -4.1021 | opp_overlap 1225107 CCGCAGAATGACAAA GGCCGCGCC CGGA AGCGCGGCC TTTTTTGGTCGATCC Pden_4072 1227143 - 1225149 - | RNA polymerase sigma factor RpoD TERM 757 1225388 - 1225410 + g 77 -11.2 -3.8512 | GGTTTTCCTGAATGG CGCTGTCCAG CGG CAGGACGGCG TTCTTGTCCTCGATG dnaG 1229225 - 1227285 - | DNA primase TERM 758 1227846 - 1227818 - G 75 -8.8 -4.1552 | CACCGGGCGAAGAAA GCCGCGAGGC-CCG GGT CGGCGCCAC-CGGC GCCACCGGCTGGAAG Pden_4074 1229849 - 1229265 - | TetR family transcriptional regulator Pden_4075 1230311 - 1231474 + | L-lactate dehydrogenase (cytochrome) Pden_4076 1232571 - 1231504 - | acyltransferase family protein TERM 759 1232623 - 1232638 + H 70 -4.6 -4.36914 | overlap 1232608 1232607 TCGGCCATGCACCCT TGGAGG ATGG CCGCCA TTTTGTAGCACAAGG Pden_4077 1232663 - 1233289 + | 50S ribosomal protein L25/general stress protein Ctc TERM 760 1233316 - 1233342 + F 95 -16.5 -4.1891 | opp_overlap 1233314 AGGCTGAACGGAATC GGGCGGCACCC CTTGC GGGCGCCGCCC TTTCTCTTGCCGCCA Pden_4078 1233405 - 1234745 + | tRNA (uracil-5-)-methyltransferase Gid Pden_4079 1234742 - 1235587 + | glutamyl-tRNA synthetase, class Ic Pden_4080 1235934 - 1235569 - | phosphoribosyl-AMP cyclohydrolase Pden_4081 1235995 - 1236432 + | NifU-related protein involved in Fe-S cluster formation TERM 761 1236531 - 1236512 - T 100 -16.4 -4.99043 | CCCGGACAAAGAAAA GCCGGCCC AAAC GGGCCGGC AGTTGCGCGCATGAT Pden_4082 1238881 - 1236788 - | DEAD/DEAH box helicase domain-containing protein TERM 762 1237528 - 1237538 + g 78 -8.2 -4.25104 | overlap 1237525 TACGGATCGGTTGCC GCCC GGC GGGC TTTTCATCCAGCACC TERM 763 1237990 - 1237967 - G 81 -8.1 -4.60487 | gap 1 CAGCAGCGCGAAAAA GGCGACCAGC GTCTT GCCGG-CGCC GACATCGCCTTGCAG TERM 764 1238549 - 1238521 - G 82 -14.6 -3.53444 | gap 1, opp_overlap 1238520 1238521 CGATCTTGCCGGAAA CCAGCCGCC-GCG CGCC CGCAGGCAGCTGG CTTTCGATCCAGTCC TERM 765 1238821 - 1238795 - G 71 -10.8 -3.54424 | GCCCATCTGGGCAAA GGCTTCGGCC GCGCGCG GGCCGACGCC CGGCAGCGTCTCGAC Pden_4083 1241175 - 1238878 - | DNA ligase, NAD-dependent Pden_4084 1241506 - 1241333 - | response regulator receiver protein Pden_4085 1241892 - 1241524 - | hypothetical protein Pden_4086 1241928 - 1242326 + | hypothetical protein TERM 766 1242339 - 1242305 - T 80 -4.9 -4.75404 | gap 1, overlap 1242306 1242307 AAACCCGATCAAAAA CCGCGCCCGGC-GTCA GGGG TGACAGCCGGCCTCAA GCTGGTCCAGCAGCC Pden_4087 1243461 - 1242832 - | hypothetical protein TERM 767 1242900 - 1242864 - G 93 -13.7 -4.13945 | gap 1, opp_overlap 1242886 ACGGGGACTTGAAAA GCGCCAGCAGCGCGGC GATGAT GCC-CGCTGACGGCGC CGCAGGCTTGGTGGC Pden_4088 1243733 - 1243464 - | hypothetical protein Pden_4089 1245883 - 1243733 - | metallophosphoesterase Pden_4090 1246230 - 1245880 - | hypothetical protein Pden_4091 1247267 - 1246230 - | hypothetical protein TERM 768 1247303 - 1247286 - H 100 -12.7 -4.65895 | CGCTCCATGCAAAAA GCCCGCT CGAA AGCGGGC CGGATCGTGGTAACG Pden_4092 1247347 - 1247706 + | hypothetical protein TERM 769 1247835 - 1247821 - T 72 -7.1 -4.20516 | GCGGGATCGAAGAAA TCCGC GCTGA GCGGA GATGGCTCAAGAAAT Pden_4093 1249376 - 1247883 - | hypothetical protein Pden_4094 1250628 - 1249366 - | hypothetical protein Pden_4095 1250937 - 1251944 + | phage integrase family protein Pden_4096 1252524 - 1251970 - | two component transcriptional regulator Pden_4097 1252892 - 1252581 - | hypothetical protein TERM 770 1253287 - 1253271 - g 81 -2.1 -5.00616 | overlap 1253272 GGCGCTGGCAAAAAA GGGGGCA TGC TGCGCCG GGCAGGACATCCACG Pden_4098 1253056 - 1254225 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Pden_4099 1254646 - 1254239 - | Fe-S metabolism associated SufE Pden_4100 1254775 - 1255284 + | hypothetical protein TERM 771 1255414 - 1255356 - T 70 -14.1 -2.62263 | opp_overlap 1255368 1255372, overlap 1255368 1255372 ATGGTTGCGATATGA GTATTTGGAGAACGAAGAAGACCGCCG TAGTG CGATGATCTTCTTCGTTCCTGAAATAC TCATGGCGACAGGGA TERM 772 1255402 - 1255368 - T 70 -11.5 -3.31792 | opp_overlap 1255368 1255372, overlap 1255356 1255372 TGAGTATTTGGAGAA CGAAGAAGACCGCCG TAGTG CGATGATCTTCTTCG TTCCTGAAATACTCA TERM 773 1255534 - 1255558 + T 100 -20.1 -3.57144 | opp_overlap 1255534 TCCGGCCATTAAAAA GGCTCGCATGG TAA CCATGCGAGCC TTTCGGAGTGCCGGC TERM 774 1255558 - 1255534 - T 100 -20.1 -4.72272 | opp_overlap 1255534 TCCGGCCATTAAAAA GGCTCGCATGG TAA CCATGCGAGCC TTTCGGAGTGCCGGC Pden_4101 1256132 - 1255587 - | GCN5-related N-acetyltransferase TERM 775 1256219 - 1256185 - R 76 -9.2 -4.07568 | opp_overlap 1256191, overlap 1256187 1256191 TGCGCTTCCCGAAAA CACGAAGGGGACCGGC CTT GCCGATCCCCTTTTTT ATAGCACCCGAGTGT TERM 776 1256217 - 1256187 - R 77 -11.8 -3.63744 | opp_overlap 1256191, overlap 1256185 1256191 CGCTTCCCGAAAACA CGAAGGGGACCGGC CTT GCCGATCCCCTTTT TTATAGCACCCGAGT TERM 777 1256191 - 1256213 + r 100 -14.8 -5.24129 | opp_overlap 1256187 1256185 1256191 TCCCGAAAACACGAA GGGGACCGGC CTT GCCGATCCCC TTTTTTATAGCACCC TERM 778 1256213 - 1256191 - R 91 -17 -3.53779 | opp_overlap 1256191, overlap 1256187 1256185 TCCCGAAAACACGAA GGGGACCGGC CTT GCCGATCCCC TTTTTTATAGCACCC rpmA 1256517 - 1256245 - | 50S ribosomal protein L27 TERM 779 1256485 - 1256502 + g 72 -5.5 -4.39329 | gap 1, opp_overlap 1256462, overlap 1256478 CGAATCGCGGCCGTT GCGGGACG AAC CG-CCTGC TTTCTTATGTGCCAT Pden_4103 1256959 - 1256537 - | ribosomal protein L21 TERM 780 1256618 - 1256656 + g 75 -5.2 -4.57073 | gap 2 CTCGATCTTGGTGCG GGCGCCGAC-GG-CAGGC TTCAC GCCGGACTTGTCGCCGCC TTTTTCAAGCAGGTC Pden_4104 1258212 - 1257151 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 781 1257536 - 1257514 - G 77 -11.2 -3.87994 | opp_overlap 1257526, overlap 1257484 ACCGATGGCCAGAAA GCCACCGCAG GCG CAGCGGTAGC AGCTGTAATAGGGCG TERM 782 1258171 - 1258153 - G 78 -10.2 -4.10657 | CCACATGGCCGAAAA CGGCGTCG GGC CGATGCCG GCGATCTCGACGACG TERM 783 1258358 - 1258341 - R 75 -9.1 -3.95852 | ACCTTATCAACGAAA CCAGCCG ATAT CGACTGG AACAAAAGGGGATTT TERM 784 1258366 - 1258382 + r 81 -10.9 -4.07568 | opp_overlap 1258366 TCGACTGGAACAAAA GGGGATT TAG AATCCCC TTTTGCGGCAGCGCC TERM 785 1258382 - 1258366 - R 93 -10.9 -4.65916 | opp_overlap 1258366 TCGACTGGAACAAAA GGGGATT TAG AATCCCC TTTTGCGGCAGCGCC Pden_4105 1258827 - 1258639 - | hypothetical protein Pden_4106 1260334 - 1258997 - | nitrilotriacetate monooxygenase Pden_4107 1261075 - 1260347 - | ABC transporter related Pden_4108 1261923 - 1261072 - | binding-protein-dependent transport systems inner membrane component TERM 786 1261327 - 1261309 - G 79 -3 -4.81551 | overlap 1261310 1261311 CAGCGAGACGAAAAA GCCCGG CAGCGCC CCCGGC AGCGCGACGTTGCGG Pden_4109 1263161 - 1261944 - | putative sulfonate/nitrate transport system substrate-binding protein TERM 787 1262931 - 1262953 + g 86 -6.3 -4.93365 | gap 1, overlap 1262933 TGGCAAAACTGGACA TCCCTTGCAG AGTT CTGC-GGGGA TTTTTGGTTCTGCCC Pden_4110 1263993 - 1263193 - | HpcH/HpaI aldolase Pden_4111 1264820 - 1263987 - | hypothetical protein Pden_4112 1265923 - 1264817 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 788 1265638 - 1265609 - G 72 -4.9 -4.4078 | gap 1, opp_overlap 1265609 1265609, overlap 1265614 GCGCTCGAAGGAAAA CCCAAGC-CTGGCC AGC GCCCCGCGCTTGAG GTTCTGGATCAGCAC Pden_4115 1267576 - 1267193 - | glyoxalase/bleomycin resistance protein/dioxygenase Pden_4116 1269003 - 1267591 - | hypothetical protein TERM 789 1268872 - 1268917 + g 74 -15.3 -3.01712 | gap 1, opp_overlap 1268867 1268881 1268882, overlap 1268874 TGCGATGACACCGGC CAGCGCAAAGCCGCCGGCAAGC GCC GCC-GCCGGCGGGCTGGCGCTG TATTCCCACAGGACC TERM 790 1268905 - 1268881 - G 71 -11.3 -3.60098 | opp_overlap 1268874 1268872, overlap 1268867 1268882 ACCGGCCAGCGCAAA GCCGCCGGCAA GCG CCGCCGCCGGC GGGCTGGCGCTGTAT TERM 791 1268907 - 1268882 - G 70 -14.7 -2.75844 | gap 1, opp_overlap 1268874 1268872, overlap 1268867 1268881 CCGGCCAGCGCAAAG CCGCCGGCAAGC GCC GCC-GCCGGCGG GCTGGCGCTGTATTC Pden_4117 1269315 - 1270067 + | methyltransferase type 11 TERM 792 1270429 - 1270456 + G 72 -13.4 -3.21747 | opp_overlap 1270429 CTACCCCAAGATCAA GCTGCGCATCGC CGAG GCGATGAGCGGC TTCGTGCTGGAATGG Pden_4118 1270064 - 1271038 + | LysR family transcriptional regulator Pden_4119 1271048 - 1272553 + | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit Pden_4120 1273921 - 1272599 - | TRAP dicarboxylate transporter, DctM subunit Pden_4121 1274550 - 1273918 - | tripartite ATP-independent periplasmic transporter DctQ TERM 793 1274593 - 1274572 - R 95 -13 -4.25104 | opp_overlap 1274570 1274572, overlap 1274557 CCCCTCGTATGAAAA GGGGACGC GCTTAG GCGTCCCC TATTTGCGGCCGTCA TERM 794 1274572 - 1274593 + r 77 -13 -3.35046 | opp_overlap 1274557 1274572, overlap 1274570 CCCCTCGTATGAAAA GGGGACGC GCTTAG GCGTCCCC TATTTGCGGCCGTCA Pden_4122 1275613 - 1274606 - | TRAP dicarboxylate transporter, DctP subunit Pden_4123 1277380 - 1276073 - | small GTP-binding protein hfq 1277614 - 1277381 - | RNA-binding protein Hfq Pden_4125 1279317 - 1277695 - | cation transporter trkA 1280702 - 1279326 - | potassium transporter peripheral membrane component TERM 795 1280807 - 1280774 - R 81 -9.4 -4.26188 | overlap 1280775 CCGATACAGGGAAAA CGCCGGCGCGAGCG CTGCAC CGATGGCGCCGGCC GAACGGTCGCATGAG TERM 796 1280806 - 1280775 - R 72 -12.9 -3.15231 | overlap 1280774 CGATACAGGGAAAAC GCCGGCGCGAGCG CTGCAC CGATGGCGCCGGC CGAACGGTCGCATGA TERM 797 1280972 - 1280992 + r 81 -12.5 -3.89957 | TGAACCGCAGGGGTG GCCGGGGCG CAA CGCTTCGGC TTCTTCGTTCTTCAA Pden_4127 1282424 - 1281036 - | two component, sigma54 specific, Fis family transcriptional regulator Pden_4128 1284679 - 1282421 - | multi-sensor signal transduction histidine kinase TERM 798 1282896 - 1282926 + g 70 -8.2 -3.91911 | overlap 1282897 TCGCGCTGCATCAGT TCGGCATCGCGCAG CAG CTTGGCGATGTCGG TTTCCTTGCGGTCCG Pden_4129 1286222 - 1284765 - | two component, sigma54 specific, Fis family transcriptional regulator Pden_4130 1287388 - 1286231 - | signal transduction histidine kinase, nitrogen specific, NtrB Pden_4131 1288434 - 1287385 - | nifR3 family TIM-barrel protein TERM 799 1288735 - 1288749 + G 70 -9.2 -3.86015 | opp_overlap 1288724 ACCATGGGGCCGATG GTGGCC GCA GGCCGC TTTCTGGACGCGCTG TERM 800 1288958 - 1288929 - g 89 -7.1 -4.82901 | gap 1, overlap 1288930 1288944 CGTGCTGGAGAAAAA CCGCGAGACGA-AG ATC CTGTCGCCGCGCGA CCTGGGCGATCTGGC Pden_4132 1288663 - 1290045 + | L-serine dehydratase 1 Pden_4133 1290172 - 1291083 + | FHA domain-containing protein Pden_4134 1291171 - 1293366 + | protein of unknown function DUF940, membrane lipoprotein putative Pden_4135 1293363 - 1294031 + | hypothetical protein TERM 801 1294061 - 1294079 + T 100 -8.8 -5.14563 | opp_overlap 1294054 1294061 AGGCAAGATGAAAAA CCGGCC CACTTGC GGCCGG TTTTTTCATGCCCGG TERM 802 1294079 - 1294061 - T 100 -8.8 -4.88228 | opp_overlap 1294061, overlap 1294054 AGGCAAGATGAAAAA CCGGCC CACTTGC GGCCGG TTTTTTCATGCCCGG TERM 803 1294167 - 1294147 - T 100 -14.7 -5.80364 | ACTGCAATAAAAAAA GGGCTGACC AAT GGCCAGCCC CTCTGAGCTTTGCGA Pden_4136 1294596 - 1294204 - | hypothetical protein Pden_4137 1295404 - 1294622 - | ABC-3 protein Pden_4138 1296175 - 1295411 - | ABC transporter related Pden_4139 1296666 - 1296172 - | ferric uptake regulator family protein TERM 804 1297662 - 1297610 - g 78 -14 -3.65902 | gap 2, opp_overlap 1297610 1297641, overlap 1297611 1297643 TCGAGGGCAGCGAAA TCCGCCAGGGCGCCGCGCTCGACCCC GAA GGGACCG-GCGCGACTCCC-GGCGCC GGGCTTTATGCGGAG TERM 805 1297661 - 1297611 - g 78 -17.5 -2.79327 | gap 2, opp_overlap 1297610 1297641, overlap 1297610 1297643 CGAGGGCAGCGAAAT CCGCCAGGGCGCCGCGCTCGACCCC GAA GGGACCG-GCGCGACTCCC-GGCGC CGGGCTTTATGCGGA TERM 806 1297641 - 1297666 + G 70 -8.9 -3.86822 | opp_overlap 1297611 1297610 1297643, overlap 1297610 GCTCGACCCCGAAGG GACCGGCGC GACTCCCG GCGCCGGGC TTTATGCGGAGCTTC Pden_4140 1296748 - 1297728 + | periplasmic solute binding protein TERM 807 1297770 - 1297794 + F 100 -16.4 -4.35524 | opp_overlap 1297770, overlap 1297789 CCGGGGCTTCAGCAA GGCGGGCGTC CATGT GGCGCCCGCC TTTTCGCTTTCAAAA TERM 808 1297794 - 1297770 - f 80 -15 -3.14132 | gap 1, opp_overlap 1297770 1297789 CCGGGGCTTCAGCAA GGCGGGCGTCC ATGT GG-CGCCCGCC TTTTCGCTTTCAAAA TERM 809 1297822 - 1297842 + F 71 -4 -4.55798 | gap 1, overlap 1297823 1297827 AAACGACGGGTTATG TGG-CGGGA AAAT TCCCGACTA TTTTCCTTTGACATC Pden_4141 1297911 - 1298087 + | hypothetical protein Pden_4142 1299486 - 1298113 - | RNA-binding S4 domain-containing protein TERM 810 1298139 - 1298171 + g 91 -11.2 -4.56597 | overlap 1298143 1298163 GCGGCCCTTTTCCCT CTGGTCGCGCTCCC TTTCC GGGGGCGCGATTCG TTTTTGCGAAGCCCG TERM 811 1298143 - 1298167 + g 88 -15 -3.80855 | overlap 1298139 1298163 CCCTTTTCCCTCTGG TCGCGCTCCC TTTCC GGGGGCGCGA TTCGTTTTTGCGAAG TERM 812 1298692 - 1298716 + g 76 -7.1 -4.29738 | GGCCGGCTTGGCCGC GCCGCGC TCGCGGAAACT GCGCGGC TTTTCCTCGGTCTCG TERM 813 1299175 - 1299208 + g 76 -7.3 -4.2679 | gap 1, opp_overlap 1299193, overlap 1299175 1299178 CACCCGCGGCAGGTC GCG-CGGCAGCGCGTC AAA GACGGTCTGCCGTCCC TTTTCATCCGAATTC Pden_4143 1299595 - 1300044 + | CMP/dCMP deaminase, zinc-binding TERM 814 1300083 - 1300055 - f 71 -4.4 -4.50976 | opp_overlap 1300057, overlap 1300056 1300057 GCTGAGATGAGAAAA CCCGCGTCGCGA AACCG TCGCGAAGGGTG CTTGCGCTGCACCGC Pden_4144 1300140 - 1303574 + | pyruvate carboxylase TERM 815 1303603 - 1303580 - T 74 -15.2 -2.64933 | overlap 1303594 1303595 GATGGAGTGAGACGA GCCGGGGCGC GAAA GCGCCCCGGG CCGACCGGGAAAATC Pden_4145 1305000 - 1303951 - | protein of unknown function DUF395, YeeE/YedE Pden_4146 1305412 - 1305071 - | regulatory protein, ArsR Pden_4147 1305903 - 1305520 - | SoxS Pden_4148 1305975 - 1306712 + | cytochrome c biogenesis protein, transmembrane region Pden_4149 1306726 - 1307286 + | thioredoxin SoxW Pden_4150 1307402 - 1307875 + | cytochrome c, class I Pden_4151 1307915 - 1308337 + | sulfur oxidation protein SoxY Pden_4152 1308359 - 1308688 + | sulfur oxidation Z protein TERM 816 1308763 - 1308749 - g 77 -3.4 -4.70583 | overlap 1308750 1308753 TTTACCAAGACAAAA GGCACC TTG GCCGCC ACGGCCCTTGGCCTC Pden_4153 1308725 - 1309597 + | diheme cytochrome c SoxA Pden_4154 1309716 - 1311410 + | 5'-nucleotidase domain-containing protein Pden_4155 1311433 - 1312725 + | oxidoreductase, molybdopterin binding TERM 817 1313455 - 1313425 - g 82 -11.7 -4.17048 | GCCGGTCGAAAAGAA GGCCGAAGCCGCG CCGGC CGAGGCACCGGCC GCCGCGCGCGAGAGC TERM 818 1313830 - 1313807 - g 73 -7.4 -4.15044 | gap 1, overlap 1313810 GCCGGGCTGAAGAAA GAGGACGAGCG CGC CGC-CGTCATC GCCTATCTCGCCACG Pden_4156 1312709 - 1313857 + | cytochrome c, class I Pden_4157 1313861 - 1314571 + | cytochrome c, class I Pden_4158 1314627 - 1315889 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_4159 1315907 - 1316818 + | beta-lactamase domain-containing protein Pden_4160 1316818 - 1317756 + | SoxH protein-like Pden_4161 1318842 - 1317760 - | protein of unknown function DUF395, YeeE/YedE TERM 819 1318948 - 1318929 - H 71 -10 -3.60525 | gap 1 GGCATGGAGAGATAA CTGCGGGCC AAG GGC-CGCAG CCCCTCCTGCCACCC Pden_4162 1319216 - 1320298 + | hypothetical protein TERM 820 1321079 - 1321062 - g 72 -4.7 -4.41616 | ACCGCTGGAAAGAAA CCCGCCC TGCC GGATGGG AAACCGCATTGCCGC Pden_4163 1320373 - 1321368 + | hypothetical protein Pden_4164 1321752 - 1321384 - | HxlR family transcriptional regulator TERM 821 1322234 - 1322255 + G 78 -5.7 -4.56597 | overlap 1322235 AGGGCAAGCGCGTGA TCGTCGCCC TGGC GCGCGGCGG TTTTTACAGCGACGA Pden_4165 1321888 - 1322436 + | (Acyl-carrier-protein) phosphodiesterase Pden_4166 1323625 - 1322456 - | NnrS family protein TERM 822 1323380 - 1323349 - G 71 -11.4 -3.55444 | opp_overlap 1323368 GCGCCAGCCCCCAAA GCGCGGCAAGCCAC CACA GCGGCCGCCCGCGC AGGCGCGGCGTGTCC Pden_4167 1324371 - 1323622 - | ABC transporter related TERM 823 1323997 - 1323941 - G 75 -9.5 -3.97308 | gap 4, opp_overlap 1323987 1323989 1323989 TCGAAATAGATGAAA TCCGGGTCGG--T-CACCAGCGCGCGGGC GAT GGCGGCGCGCTGGCGCATGCCG-CCCGAA AGCTCGGAGGGGTAT Pden_4168 1325186 - 1324368 - | binding-protein-dependent transport systems inner membrane component TERM 824 1324678 - 1324659 - G 76 -7.8 -4.2586 | CGATACGAACAGAAA GCGCCG CAAGGGGC CGGCGC CAAAGACCCGCGCCA TERM 825 1325021 - 1325009 - G 75 -10.5 -4.07568 | overlap 1325010 TGCCCTCGTGCAAAA GCCGC GCC GCGGC GGCCAGCGTGTCCAG Pden_4169 1326178 - 1325183 - | putative sulfonate/nitrate transport system substrate-binding protein Pden_4170 1326589 - 1326284 - | hypothetical protein TERM 826 1326354 - 1326335 - G 79 -4.8 -4.74801 | overlap 1326337 GAACTCGACGAAAAA CCGCACCG GCGC CGGGGCCG CAACCTCGTGCGGCC Pden_4171 1327206 - 1326586 - | hypothetical protein TERM 827 1326939 - 1326892 - G 78 -14 -3.54424 | gap 1, overlap 1326865 1326893 CCCGATGCCGTGAAA GCCGCCCTCGGCCGCGGCACCCG TGA CCAGCGTCGCGACCGAGG-CGGT GACGCCGGTCGTGCC TERM 828 1326938 - 1326893 - G 78 -17.5 -2.72511 | gap 1, overlap 1326865 1326892 CCGATGCCGTGAAAG CCGCCCTCGGCCGCGGCACCCG TGA CCAGCGTCGCGACCGAGG-CGG TGACGCCGGTCGTGC Pden_4172 1327758 - 1327210 - | BadM/Rrf2 family transcriptional regulator TERM 829 1327662 - 1327650 - G 72 -6.9 -4.36914 | overlap 1327653 1327654 TCCGCCCGCACAAAA GCACG GCC CGCGC CCGCCGGTCAATGGC Pden_4173 1329977 - 1327758 - | TonB-dependent receptor Pden_4174 1330301 - 1331233 + | DeoR family transcriptional regulator Pden_4175 1332679 - 1331237 - | carbohydrate kinase, FGGY Pden_4176 1333350 - 1332694 - | HAD family hydrolase Pden_4177 1334817 - 1333354 - | mannitol dehydrogenase domain-containing protein Pden_4178 1335885 - 1334887 - | ABC transporter related Pden_4179 1336727 - 1335897 - | binding-protein-dependent transport systems inner membrane component Pden_4180 1337602 - 1336733 - | binding-protein-dependent transport systems inner membrane component Pden_4181 1339008 - 1337701 - | extracellular solute-binding protein TERM 830 1339123 - 1339092 - R 100 -20.2 -3.75629 | gap 1, opp_overlap 1339088 1339082 GACTGTCAAGCGAAA TCGGCGCGG-CCCGA TAC CCGGGACCGCGCCGA CCGATGATTTCTTGC Pden_4182 1339621 - 1339157 - | 7-cyano-7-deazaguanine reductase Pden_4183 1340344 - 1339637 - | radical SAM domain-containing protein Pden_4184 1340694 - 1340341 - | putative 6-pyruvoyl tetrahydropterin synthase Pden_4185 1341395 - 1340694 - | exsB protein TERM 831 1342367 - 1342393 + G 73 -7.9 -4.18018 | gap 1, opp_overlap 1342369, overlap 1342373 GACTGGCTGCGCAAC GAGCGCGGCTCG ACGG CG-GTCGCGCCC TTTTCGGTGCGCGCC Pden_4186 1341593 - 1342585 + | hypothetical protein Pden_4187 1343656 - 1342595 - | glycerol-3-phosphate transporter ATP-binding subunit Pden_4188 1344520 - 1343657 - | binding-protein-dependent transport systems inner membrane component Pden_4189 1345394 - 1344513 - | binding-protein-dependent transport systems inner membrane component Pden_4190 1346739 - 1345444 - | extracellular solute-binding protein TERM 832 1345517 - 1345532 + g 70 -9 -3.82455 | GCCGTGGCCGCGTCC TGCTGG CCGG CCAGCA TCTTTTCGTATTCCT TERM 833 1347200 - 1347188 - g 75 -4.7 -4.66609 | GACGCGATGGAAAAA CCCGG CCC CCGCG CCCCCGACCTGACCG Pden_4191 1346993 - 1348057 + | hypothetical protein Pden_4192 1348066 - 1349481 + | hypothetical protein TERM 834 1349836 - 1349820 - g 71 -11.5 -3.57792 | GCATCGAGTTCGAAA GCCGCCG CCG CGGCAGC AAAAAGCCCGACCGC TERM 835 1349881 - 1349842 - g 76 -2.6 -4.72272 | CCGCGGCAGCAAAAA GCCCGACCGCAACACCCG CATC CTGGTCGTGCCCTCGGAC GAGACGCTGGCCATC Pden_4193 1349495 - 1350223 + | hypothetical protein Pden_4194 1352109 - 1350220 - | SARP family transcriptional regulator TERM 836 1351196 - 1351145 - G 72 -14.5 -2.87468 | gap 3, overlap 1351179 1351180 TCCGACCAGACCAGA TGCCCGCCGGCGCCGCGCTGCACCTC GAC GAAAAGC--CGCAGC-CCGGCGGGCA GGTGGAACGGCTTCA TERM 837 1351191 - 1351179 - G 72 -6.2 -4.26076 | overlap 1351145 1351180 GCACCTCGACGAAAA GCCG CAGCC CGGC GGGCAGGTGGAACGG TERM 838 1352071 - 1352049 - G 78 -12.6 -3.78419 | GCAGGAAATACAGAA GCGCCCGCGC CTT GCGCAGCCGC AGCGCCTCAAGAACC TERM 839 1352208 - 1352224 + r 76 -5.7 -4.57073 | opp_overlap 1352218 1352219, overlap 1352209 GCGATCAACGGTTCA TCGCGGC AAA GCGGCGG TTTTTGCCGGCGCTA Pden_4195 1353016 - 1352237 - | nitroreductase TERM 840 1352534 - 1352492 - G 72 -8.3 -4.07568 | gap 1, overlap 1352494 CTGCGTGCGCGAAAA GATCGCGGCC-AGGCACAGG ATGA CCGGCGCCTCGGCCACGAAG GGCCAGGTGTAGAAC TERM 841 1352532 - 1352494 - G 83 -15.3 -3.63744 | gap 1, overlap 1352492 GCGTGCGCGAAAAGA TCGCGGCC-AGGCACAGG ATGA CCGGCGCCTCGGCCACGA AGGGCCAGGTGTAGA Pden_4196 1354331 - 1353021 - | hypothetical protein TERM 842 1353655 - 1353632 - G 70 -3.7 -4.42386 | overlap 1353604 1353633 1353634 TGGCCAGCGACAAAA GCCGCACCA CGACCC CGAAGCGGC GGTAGTGCCTGATGA Pden_4197 1355443 - 1354328 - | UBA/THIF-type NAD/FAD binding protein TERM 843 1354358 - 1354382 + gr 70 -5.5 -4.25104 | GCCGCAGACCGGGCA GCCGGGCTTGC GCA GCACGCCATGC TTTTCCTGCCGCAGC Pden_4198 1357277 - 1355415 - | radical SAM domain-containing protein Pden_4199 1357701 - 1357309 - | hypothetical protein TERM 844 1358335 - 1358349 + G 82 -8.5 -4.43501 | TCTTCGCCTATTACC GCCCC TGGAT GGGGC TTTTCTGGCTGGATT TERM 845 1359282 - 1359323 + G 72 -5.9 -4.26903 | gap 3 CCGGATGCCGTTCCC GCCC-CGCCGCTTGGGGGCG ACATC CGCTTC-GAG-GGCGTGGGC TTTTCCTACGATGCC Pden_4200 1358307 - 1360007 + | ABC transporter related TERM 846 1360091 - 1360068 - T 93 -18.2 -3.75332 | AGCCCTCAAGGGAAA CGGCCAGCCT TGCA AGGCTGGCCG TCATCCCCGGGGTGG Pden_4201 1362173 - 1360113 - | TonB-dependent heme/hemoglobin receptor family protein Pden_4202 1362333 - 1363373 + | hemin-degrading family protein TERM 847 1363845 - 1363791 - g 71 -9.7 -3.72576 | overlap 1363772 1363771 GCGCGCTGCACGAAA GGCTGGCGGCCGACCTGCAAGCGGC GCTCG GCCGGGCGCAGGCCGTGGGCGAGCC GAAGAAGGTGCTGTT TERM 848 1364123 - 1364093 - g 71 -11.1 -3.54129 | overlap 1364095 CACACGGCGGCGAAA GAGGCC-GCGCTGGC CAT GCCGGCGCTGGCC-C AGACCCCGGCCGGGC TERM 849 1364122 - 1364095 - g 79 -14.8 -3.34715 | gap 1, overlap 1364093 CACGGCGGCGAAAGA GGCC-GCGCTGGC CAT GCCGGCGCTGGCC CAGACCCCGGCCGGG Pden_4203 1363370 - 1364245 + | periplasmic binding protein TERM 850 1364295 - 1364353 + G 73 -16.4 -2.64735 | overlap 1364302 GCTGGAAGGGGACCG CAGCCACCGCGCCCGGCGCCTGGGCCTG TTC CTGGCGCTGCTGCTGGCCGTGGTGGCGG TGATCTCGCTGGGCT Pden_4204 1364245 - 1365321 + | transport system permease protein TERM 851 1365540 - 1365575 + G 70 -14.6 -2.75481 | overlap 1365542 CCCGAGGAGCTGGCG CAGCGCCGGGGCGTGC TGCC GCAGGCCGCCGCGCTG TCCTTCCCCTTCACC Pden_4205 1365318 - 1366091 + | hemin importer ATP-binding subunit Pden_4206 1366192 - 1367175 + | alcohol dehydrogenase Pden_4207 1367233 - 1369002 + | poly-beta-hydroxybutyrate polymerase domain-containing protein Pden_4208 1370102 - 1368999 - | acetate kinase Pden_4209 1371025 - 1370099 - | phosphate butyryltransferase TERM 852 1370756 - 1370799 + g 74 -16.6 -2.82015 | gap 1 GATGGCGCCGACCTG GCCG-GCCGCGGCCATCTGCG CGG CGCGGGCGGCGGCGGCATGGC TGTGCTCGGTATCGA Pden_4210 1371570 - 1371199 - | response regulator receiver protein TERM 853 1371650 - 1371626 - R 89 -17.1 -3.25223 | opp_overlap 1371648, overlap 1371641 1371645 GATCGAGACGACGAA GGCCCGCCCCC GAA AGGGACGGGCC GCCATTCCCGGCTTC actP 1373379 - 1371664 - | acetate permease Pden_4212 1373684 - 1373376 - | hypothetical protein Pden_4213 1375846 - 1373891 - | acetate--CoA ligase TERM 854 1376110 - 1376085 - R 93 -18.3 -3.63805 | ACGGGACATGCGAAA GCCGCCACGCA GCCA TGCGCGGCGGC ATCAAGGCCCGGCGG Pden_4214 1377048 - 1376134 - | ApbE family lipoprotein TERM 855 1376768 - 1376727 - G 74 -15.1 -3.01712 | gap 1 CGGTCGGGTCGAACA GCCCACCGCTGGCGCGATGC ACG GCGCCG-GCCAGCGACAGGC AGTCGAGCAATTCAA Pden_4215 1377620 - 1377045 - | NosL family protein TERM 856 1377247 - 1377228 - G 72 -8.5 -4.07568 | CTCGCGGCTGGAAAA GGGCACC GCCTCG GGCGCCC CCATGCCCCCGGCCT Pden_4216 1378441 - 1377617 - | nitrous oxide maturation protein NosY Pden_4217 1379337 - 1378438 - | ABC transporter related TERM 857 1378534 - 1378552 + gr 76 -8.1 -4.30576 | gap 1 GCCCAGCCCGGCGAT GC-GGGCC AGCA GGCCCAGC TTTTCGTCCTGCGCG Pden_4218 1380634 - 1379303 - | periplasmic copper-binding TERM 858 1380232 - 1380254 + gr 73 -12 -3.35679 | GGGCGTCGCGCCCGC CATGCACGTC GAT GCCGTGCATG TTCTCGGTCAGCCGC TERM 859 1380388 - 1380362 - GR 78 -8.7 -4.27316 | gap 2, overlap 1380363 GCCGGTAACGGAAAA GCCGCG-CAG-CG TCA CGTCCGGCGCGGC GACGGTGACGACCGT TERM 860 1380531 - 1380510 - GR 87 -17.3 -2.79831 | CGAAGCCGCAGCACA TCGCCGGGG GCAG CCCCGGCGA TGGCATCGGCAAGGC Pden_4219 1382598 - 1380640 - | nitrous-oxide reductase TERM 861 1382535 - 1382578 + g 70 -4.2 -4.50358 | opp_overlap 1382559, overlap 1382536 CGCCGGCCACGGCCG CGCCCCCGGCTGTCGCGCCC AAAA GCGCGCGGCGGCTGAGACCC TTTTCCTGTTTCGAT Pden_4220 1384796 - 1382616 - | FMN-binding domain-containing protein Pden_4221 1385203 - 1384793 - | hypothetical protein Pden_4222 1385540 - 1385983 + | pseudoazurin TERM 862 1386015 - 1386047 + F 81 -13.5 -3.61715 | overlap 1386016 CCGCCGACAGGGGAA C-GGGCGCGGCGCGA CGGGA TCGC-CCGCGCCCTG TTCTTGACCAAGATC TERM 863 1386016 - 1386045 + F 93 -17.2 -3.38812 | gap 1, overlap 1386015 CGCCGACAGGGGAAC GGGCGCGGCGCGA CGGGA TCGC-CCGCGCCC TGTTCTTGACCAAGA TERM 864 1386133 - 1386093 - f 76 -9.1 -4.13767 | gap 2 TGCGCCATGGCAAAA CCCCTGG-CGC-ATGCCCA TATGC CAAGCATGGCGTCCAGGGG GAAATCGCATGGACA TERM 865 1386291 - 1386318 + G 75 -5.4 -4.56597 | opp_overlap 1386255, overlap 1386295 GACCGGCGAGGGCGA GGATGCCGGGCG CCAT CGCCTGACCTTC TTTTTCCAGGGCCAG Pden_4223 1386142 - 1386414 + | hypothetical protein TERM 866 1386463 - 1386417 - T 78 -12.9 -3.54741 | gap 1, overlap 1386448 CAGCAGCGCCTGAAA CCGGGC-CGCGGGCGCCTTCGG ATCG CCGAAAGCCCCGGCAAGCCCCG ACGCCGCCCGCCATG Pden_4224 1387161 - 1386481 - | hypothetical protein Pden_4225 1387732 - 1387139 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Pden_4226 1389198 - 1387729 - | UbiD family decarboxylase TERM 867 1389454 - 1389435 - g 78 -5.7 -4.57073 | gap 1, opp_overlap 1389422 1389448 GATCGCCGCGAAAAA GCCGGCGA TCCTG TCGC-GGC TCGGCCCCTACGCCC Pden_4227 1389319 - 1389852 + | hypothetical protein Pden_4228 1389849 - 1390844 + | peptidase U32 Pden_4229 1390847 - 1391737 + | peptidase U32 Pden_4230 1391761 - 1392975 + | NnrS family protein TERM 868 1392991 - 1393012 + T 100 -12.9 -5.06816 | opp_overlap 1392991 GCCACAATGCGAAAA GGCCCGGCC ATGC GACCGGGCC TTTTTCTTGCAGGGT TERM 869 1393012 - 1392991 - T 100 -15.1 -4.21936 | opp_overlap 1392991 GCCACAATGCGAAAA GGCCCGGCC ATGC GACCGGGCC TTTTTCTTGCAGGGT Pden_4231 1393547 - 1393035 - | hypothetical protein Pden_4232 1394350 - 1393547 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 870 1393924 - 1393959 + g 70 -15.4 -2.78384 | opp_overlap 1393889 GTTCGGCCAGCACCG CCTCGGCCCGCGCC CGCGCCTC GGTGCGAGCCGAGG TATCCTCGGGCGCGG Pden_4233 1395057 - 1394356 - | respiratory nitrate reductase, gamma subunit Pden_4234 1395761 - 1395072 - | nitrate reductase molybdenum cofactor assembly chaperone Pden_4235 1397275 - 1395758 - | nitrate reductase, beta subunit Pden_4236 1401036 - 1397272 - | nitrate reductase, alpha subunit TERM 871 1399116 - 1399148 + g 71 -9.7 -3.77196 | overlap 1399132 TCAGGCTGAGCCGGC TCCAATCGCCCGCCG GCG CTGTGGGCGACAGGA TTTCCTGCGTGCTCA Pden_4237 1403768 - 1401051 - | nitrite transporter TERM 872 1403112 - 1403102 - G 72 -8.2 -4.07859 | CGAAGAAATAGTAAA GCGC GAA GCGC CAGACCTGCAGCCTC TERM 873 1403709 - 1403727 + g 76 -8.1 -4.3129 | opp_overlap 1403694 CAGCGTGAAGGCGGT GGTGCTG AGCCA CAGCGCC TTTTGCTGCTGCATC ftrB 1404042 - 1404746 + | transcriptional activator FtrB TERM 874 1405830 - 1405874 + G 72 -14.2 -3.14132 | gap 1 GTCGTGCGCAGCGAC GGCGCGCTGTCGGGCTATCGC TGGG GCG-TGGCGCGCAAGCGCGCC TTGCTCGACCGCGAG Pden_4239 1404840 - 1405901 + | methylated-DNA--protein-cysteine methyltransferase Pden_4240 1405972 - 1406949 + | FAD-binding 9, siderophore-interacting domain-containing protein Pden_4241 1408144 - 1406954 - | Bcr/CflA subfamily drug resistance transporter TERM 875 1407536 - 1407512 - G 73 -10.6 -3.87815 | GGTCAGGCCCAGAAA GCGGCGGTCG GTCAG CAGCCGCCGC GCCCCCGCCGCCATG TERM 876 1408583 - 1408571 - g 71 -2.6 -4.59773 | overlap 1408573 GGTCAGTCGGAAAAA CGCC GCCGA GACG GTGTTCGAGGATCTG Pden_4242 1408491 - 1408673 + | hypothetical protein Pden_4243 1408704 - 1409231 + | GntR domain-containing protein Pden_4244 1409413 - 1410396 + | asparaginase/glutaminase Pden_4245 1411347 - 1410436 - | galactose 1-dehydrogenase Pden_4246 1413095 - 1411347 - | dihydroxy-acid dehydratase TERM 877 1412432 - 1412482 + g 74 -14.7 -3.04144 | CATTGCCCGACAGCG CCATCCCCAGCGCCTCGGCCATG CTGGC CATGGTCGAGGCGGTGCCCATGG TGTTGCAGGTGCCCG TERM 878 1413115 - 1413143 + r 71 -8 -4.07568 | gap 1 GCACCTCGATGCGGG CCGGCAGGTCGGC CCCG GCCG-CCAGCGGG TTTTGCAGCGGCAGG Pden_4247 1414078 - 1413095 - | hypothetical protein TERM 879 1413929 - 1413871 - G 70 -13.1 -3.29144 | gap 2, overlap 1413872 CCACGGGCGGCAGAA CCCGCCCCTCGG-CAA-GCGCGGCGGC CAGGTCC ACCGCCGCGCCTTGGCCGCGGTGCGCA GCCTCGTCGGCCAGC Pden_4248 1414230 - 1415183 + | LysR family transcriptional regulator TERM 880 1415261 - 1415231 - T 100 -19.6 -3.81146 | opp_overlap 1415255, overlap 1415232 TTGGGGAACGAAGAA GCCGGCGCCGCGCG GGA CGGGCGGCGCCGGG CGCGTCGTCAGGCGT TERM 881 1415260 - 1415232 - T 100 -23.1 -2.88366 | opp_overlap 1415255, overlap 1415231 TGGGGAACGAAGAAG CCGGCGCCGCGCG GGA CGGGCGGCGCCGG GCGCGTCGTCAGGCG TERM 882 1415255 - 1415275 + T 79 -10.3 -4.09685 | opp_overlap 1415232 1415231, overlap 1415272 GCGCGGGACGGGCGG CGCCGGGCG CGT CGTCAGGCG TTTTGCAGGCTGCGC Pden_4249 1416657 - 1415269 - | sodium:dicarboxylate symporter Pden_4250 1416909 - 1417622 + | ankyrin Pden_4251 1417634 - 1418107 + | CMP/dCMP deaminase, zinc-binding TERM 883 1418165 - 1418221 + G 74 -12.7 -3.64703 | opp_overlap 1418216, overlap 1418132 TCGGGCTGGCGCTGC GGCCGTTCCTGACCGGGGTCGGCCCCG TCG CGACGCCGATCTCGGCCGAAACCGGCC TTTCCATGCAGGGCC Pden_4252 1418104 - 1419321 + | major facilitator transporter TERM 884 1419464 - 1419478 + G 79 -11.4 -4.09864 | opp_overlap 1419463 1419462 GTCACCGACGAAAGC GGCCAG CTT CTGGCC TTTTCGCGCATGGAT Pden_4253 1419350 - 1419775 + | hypothetical protein TERM 885 1419869 - 1419829 - f 81 -16.7 -2.62396 | opp_overlap 1419868 CATCGGGCCACACCA TGCGGGCCGCCGGCCGGAC CCG GTCTGGACGCCGGCCGGCA CGCCGGCTAAGGCAG Pden_4254 1419940 - 1420677 + | hypothetical protein Pden_4255 1420741 - 1421979 + | molecular chaperone, DnaK Pden_4256 1422939 - 1422043 - | LysR family transcriptional regulator Pden_4257 1423057 - 1424502 + | molybdopterin dehydrogenase, FAD-binding Pden_4258 1424499 - 1426811 + | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TERM 886 1426882 - 1426858 - g 100 -17.1 -4.07568 | opp_overlap 1426844, overlap 1426827 CTCCCCGCGCGAAAA GGGGGCGGCGA TGT TCGTCGCCCCC GAGGGGCTCAGCGGC Pden_4259 1426808 - 1427551 + | hypothetical protein Pden_4260 1427539 - 1428816 + | guanine deaminase TERM 887 1428979 - 1428947 - T 100 -21.3 -3.75629 | opp_overlap 1428950, overlap 1428949 CAGCGGGAACGCAAA CAGTGGGGCGCCCGA TTT CCGGGCGCCCCACTC CGGGGACTGAGTTCG TERM 888 1428977 - 1428949 - T 100 -23.9 -3.46068 | opp_overlap 1428950, overlap 1428947 GCGGGAACGCAAACA GTGGGGCGCCCGA TTT CCGGGCGCCCCAC TCCGGGGACTGAGTT Pden_4261 1429504 - 1429004 - | acetone carboxylase gamma subunit Pden_4262 1431884 - 1429569 - | hydantoinase B/oxoprolinase Pden_4263 1434080 - 1431909 - | hydantoinase/oxoprolinase TERM 889 1434047 - 1434064 + g 77 -3.3 -4.77036 | CCTTTCGATGCGATT CCTTGTC CAAT GGCATGG TTTTTCCTCCTCCCA Pden_4264 1436009 - 1434201 - | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 890 1434583 - 1434565 - G 70 -8.8 -3.86015 | CAGGTTTCCGAGAAA TGCCTGAC CAG GTCCGGCA GGTCCGCGCGCCGCT TERM 891 1435458 - 1435442 - G 71 -10.8 -3.65351 | opp_overlap 1435437 CCAGGCTGACCGAAA GCGCCG CGCCC CGGCGC ATCCGTTCCTGGGCG Pden_4265 1436916 - 1436146 - | GntR domain-containing protein Pden_4266 1438409 - 1436925 - | MlrC domain-containing protein TERM 892 1436963 - 1436975 + g 82 -3.3 -5.00616 | opp_overlap 1436963 GGTCCAGCGGATATA TGGGC CGG GCCAA TTTTTTGAAAGCAAA Pden_4267 1439680 - 1438406 - | amidase Pden_4268 1440381 - 1439677 - | ABC transporter related TERM 893 1440228 - 1440251 + g 71 -3 -4.56775 | overlap 1440208 1440229 GGGGCGTGATCAGCC CCACGGCGGT CTTC AGCGTCGTGC TTTTTCCGGCGCCGT Pden_4269 1441145 - 1440378 - | ABC transporter related Pden_4270 1442124 - 1441147 - | inner-membrane translocator Pden_4271 1443065 - 1442121 - | inner-membrane translocator TERM 894 1443031 - 1443002 - GR 82 -11.3 -4.10453 | overlap 1442991 1442992 1443003 GAAACCGGGCGAAAA GGCCCCGCGCGAC AGGG ATCGCGCGGGGAG GCGGGGGATCAGGCA TERM 895 1443030 - 1443003 - GR 80 -14.8 -3.0579 | overlap 1442991 1442992 1443002 AAACCGGGCGAAAAG GCCCCGCGCGAC AGGG ATCGCGCGGGGA GGCGGGGGATCAGGC Pden_4272 1444251 - 1443040 - | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein TERM 896 1444377 - 1444390 + H 71 -3.9 -4.56597 | opp_overlap 1444377 ATTTCACAGTGAAAA CAATT GATT AATTG TTTTTGCAGCGCAGC TERM 897 1445198 - 1445179 - g 73 -7 -4.11394 | overlap 1445182 ATGGGACGTGGAAAA CTACGGCG AGCG CGCCGCCG ACGCCATCGAGGAGG Pden_4273 1444586 - 1445965 + | aminotransferase class-III TERM 898 1446203 - 1446147 - g 72 -8.6 -4.07568 | gap 2, opp_overlap 1446165 1446202 TCGGCCGGGCGAAAA GCTGCCATCGACCCGCGCGCTGGCCC TGCATTT GGGCGTG-GCGCGGGT-GACGGTGGC GCAGGCCTTCGCCGA TERM 899 1447376 - 1447400 + G 100 -10.6 -5.1615 | overlap 1447377 1447396 CGGGCGCGGCATTCT TCGCCGCACC TTCGC GGGGCGGCGG TTTTTTCCGTCTTGC TERM 900 1447377 - 1447399 + G 74 -11.9 -3.68606 | overlap 1447376 1447396 GGGCGCGGCATTCTT CGCCGCACC TTCGC GGGGCGGCG GTTTTTTCCGTCTTG TERM 901 1447489 - 1447502 + G 76 -3.1 -4.70534 | gap 1 ATGCGCGAGTTGTCG GC-CCA TTC TGGAGC TTTTGTGTCTATTTC Pden_4274 1446028 - 1447527 + | GntR family transcriptional regulator Pden_4275 1448467 - 1447511 - | phosphate acetyltransferase Pden_4276 1449496 - 1448480 - | hypothetical protein TERM 902 1449764 - 1449728 - R 100 -21.5 -3.36327 | overlap 1449729 GGACGGGACGCAGAA GGCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGCA CCCGATCAGGCGGCG TERM 903 1449763 - 1449729 - R 100 -25 -2.61582 | overlap 1449728 GACGGGACGCAGAAG GCGGGGTGCGGGGGCC GGG AGCCTCCGCACCCCGC ACCCGATCAGGCGGC Pden_4277 1451551 - 1449770 - | sulfoacetaldehyde acetyltransferase Pden_4278 1453204 - 1451564 - | glucose-methanol-choline oxidoreductase TERM 904 1452330 - 1452298 - G 70 -15.6 -2.75074 | gap 1, overlap 1452295 GGCATTTGAACACCA GCCGC-GCCTGCAGG TGGT CCTGCAGGTTGCGGC CCACCTCGGGGGAAT Pden_4279 1454600 - 1453293 - | major facilitator transporter TERM 905 1454381 - 1454363 - G 78 -17.4 -2.74371 | overlap 1454351 1454360 AATGGCCGAAGACCA GCCCGCCC AGC GGGCGGGC GACAAAGCCCACGGC TERM 906 1454516 - 1454497 - G 82 -5.8 -4.78326 | gap 1 CCGTAAAGAAAGAAA TCGTACCAT TCG ATGGT-CGA TCCGACCAGGCTTGC TERM 907 1454936 - 1454993 + G 71 -10.6 -3.72576 | gap 3, opp_overlap 1454902 1454931, overlap 1454938 CCGAGATCAACGCCG CGCTGGGGCTGCC-GG-TGCCGACCATCC ACC GGCTGGTCGGCAACCTGGAAGC-CGAGGG TTTCCTGAGCCGCCA Pden_4280 1454824 - 1455588 + | regulatory proteins, IclR TERM 908 1455686 - 1455714 + T 74 -10.1 -3.75153 | opp_overlap 1455666, overlap 1455687 ACGTGATCGAGGCGG CGGGACCTGCCCG GCC CTGGCAGGCCCCC TTTCCGTTCCGGCCG TERM 909 1455687 - 1455713 + T 73 -13.6 -2.84878 | opp_overlap 1455666, overlap 1455686 CGTGATCGAGGCGGC GGGACCTGCCCG GCC CTGGCAGGCCCC CTTTCCGTTCCGGCC Pden_4281 1456684 - 1455734 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_4282 1457673 - 1456681 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Pden_4283 1458555 - 1457677 - | binding-protein-dependent transport systems inner membrane component Pden_4284 1459530 - 1458559 - | binding-protein-dependent transport systems inner membrane component Pden_4285 1461141 - 1459549 - | extracellular solute-binding protein Pden_4286 1462191 - 1461247 - | LysR family transcriptional regulator Pden_4287 1462297 - 1463931 + | amidohydrolase 3 Pden_4288 1463935 - 1464846 + | cobalamin synthesis protein, P47K Pden_4289 1465112 - 1465765 + | hypothetical protein Pden_4290 1465671 - 1467191 + | hypothetical protein Pden_4291 1467191 - 1470424 + | DNA polymerase III, alpha subunit TERM 910 1470461 - 1470440 - T 81 -11.5 -3.95073 | GCGCACATGCAGAAA CCGCGCCCC CTGC GAGACGCGG TTCCAAAGCTGTTCC rpmG 1470658 - 1470491 - | 50S ribosomal protein L33 TERM 911 1471047 - 1471067 + r 74 -11.1 -3.60792 | overlap 1471041 CTGTTACCAGCCCCG CGGTGGGCT CTT ACCCCACCG TTTCACCCTTGCCCA Pden_4293 1471668 - 1471303 - | HxlR family transcriptional regulator TERM 912 1471564 - 1471537 - G 78 -9.9 -4.14392 | gap 2 GCGCAACGCGGAAAA GCG-GTGC-GGCC CCTC GGCCAGCACGCGC AGCACCAGCATGCCC Pden_4294 1471754 - 1472596 + | NmrA family protein Pden_4295 1474992 - 1472593 - | UvrD/REP helicase TERM 913 1472638 - 1472659 + g 74 -13.7 -3.27923 | CCCACCGGCCTGCGA GGCGGGCTG CACA TAGCCCGCC TTGATGGTCTTGAAG Pden_4296 1475350 - 1475039 - | hypothetical protein TERM 914 1475227 - 1475216 - G 89 -5.8 -5.10526 | opp_overlap 1475225, overlap 1475217 1475225 ATAGGAAAAAAGAAA GGCT GAAT AGCC GGCAGCCCGCTTCTC Pden_4297 1476316 - 1475351 - | putative GTP cyclohydrolase TERM 915 1476187 - 1476224 + g 82 -14.7 -3.40299 | overlap 1476166 1476185 GCGCACCGACGATCA GGCTGGCCGGCCCGTTC TGAA GGTCGGGCAGGCTGGCC TTGTAGCTGTCGTCC Pden_4298 1477600 - 1476404 - | O-succinylhomoserine sulfhydrylase TERM 916 1476496 - 1476475 - G 73 -8 -4.13014 | gap 1, opp_overlap 1476493 TGGACAGGCGCAAAA GACC-CGGC GTGAT GCCGAGGTC CAGCCGAACCTCTTC Pden_4299 1478360 - 1477671 - | intracellular septation protein A Pden_4300 1479465 - 1478374 - | hypothetical protein TERM 917 1479262 - 1479232 - G 100 -17.5 -4.15044 | CTCTTCGGCAAGAAA GGCCGGCGCGGCG TCGGT CGCCGCGCCACCC TCGCGGGGCTGCGAT Pden_4301 1479732 - 1482491 + | aconitate hydratase TERM 918 1482517 - 1482538 + T 100 -15.1 -4.3208 | AGGGCGAGTTTAGCA GGCCGTCCC TTCG GGGGCGGCC TTTTCGCTTGTGGGA Pden_4302 1483326 - 1482658 - | hypothetical protein TERM 919 1483440 - 1483419 - R 100 -15.1 -4.3208 | CCCCACAAGCGAAAA GGCCGCCCC AGAA GGGACGGCC CTGAAACCTGCGATC rpsD 1484085 - 1483465 - | 30S ribosomal protein S4 Pden_4304 1484284 - 1484655 + | iron-sulfur cluster assembly accessory protein TERM 920 1484635 - 1484658 + F 76 -5.9 -4.57341 | TTCGCCCCGCTGGAA GGCTCGCGC GCGAAA GCCTGAGCC TTTTTGCCGCAAGTT Pden_4305 1484756 - 1485499 + | Triose-phosphate isomerase TERM 921 1485550 - 1485515 - f 79 -10.5 -4.17048 | gap 1, opp_overlap 1485526 1485546, overlap 1485516 CGCCCCCGAAAAGAA CGCCATTCC-ATCCGG CCGGC CCGGTTTGGAATGGCA TTGCCCTTTTGCGGG Pden_4306 1485545 - 1486678 + | ABC transporter related Pden_4307 1486668 - 1487342 + | binding-protein-dependent transport systems inner membrane component Pden_4308 1487359 - 1488153 + | YaeC family lipoprotein TERM 922 1488235 - 1488257 + T 86 -9.8 -4.5442 | opp_overlap 1488235, overlap 1488230 GGGTCACGCAGGAAA CGCCCCGC CGACGAA GTGGGGCG TTTTCTCATTCCGGC Pden_4309 1489765 - 1488263 - | Acetyl-CoA hydrolase TERM 923 1489865 - 1489848 - R 88 -10.5 -4.4078 | TGCGCGCAAGGAAAA GCCGGCC CGAA GGCCGAC TTGCGCAACATCGTT Pden_4310 1490347 - 1489904 - | DoxX family protein TERM 924 1490115 - 1490095 - G 91 -11.8 -4.56597 | CCTGGCGGGTAAAAA GCCCGGCG ATCAG CGCCAGGC CGCCCAGGATCTCGG Pden_4311 1490452 - 1491363 + | LysR family transcriptional regulator Pden_4312 1492726 - 1491326 - | FAD linked oxidase domain-containing protein Pden_4313 1493307 - 1492726 - | GCN5-related N-acetyltransferase Pden_4314 1494572 - 1493307 - | peptidase M16 domain-containing protein Pden_4315 1495957 - 1494569 - | threonine synthase Pden_4316 1496638 - 1495967 - | SURF1 protein TERM 925 1496685 - 1496659 - R 93 -14.4 -4.05788 | GGCCTCCAAAGCAAA CGGCGCGGGA ACATCTG CCCCGCGCCG TGGAAATCTCTGTCG Pden_4317 1497528 - 1496704 - | cytochrome c oxidase, subunit III Pden_4318 1498150 - 1497563 - | cytochrome C oxidase assembly protein Pden_4319 1498422 - 1498147 - | hypothetical protein Pden_4320 1499333 - 1498416 - | protoheme IX farnesyltransferase Pden_4321 1500239 - 1499343 - | cytochrome-c oxidase TERM 926 1500378 - 1500365 - H 85 -5.2 -5.00616 | opp_overlap 1500365 1500373 CTTCTTGTCAAAAAA GCCC TAGGCG GGGC TTCATGACAAGGACC Pden_4322 1500382 - 1501821 + | peptidase U62, modulator of DNA gyrase Pden_4323 1501919 - 1503175 + | DNA protecting protein DprA TERM 927 1503384 - 1503397 + F 73 -9.5 -3.91716 | opp_overlap 1503382 TGAACCGTAATCACG GCGCG GTCA CGCGC TTGTTTGGGAACTGG Pden_4324 1503467 - 1505602 + | OmpA/MotB domain-containing protein TERM 928 1505649 - 1505620 - T 100 -17.9 -4.13767 | opp_overlap 1505625, overlap 1505625 GCGCCGACCCGAAAA GGAAACCGCGGGG GCGA CCCCGCGGTTTTC GCTTGCCCGGCAAGC TERM 929 1505625 - 1505644 + T 100 -16.4 -4.27316 | opp_overlap 1505620 1505625 GACCCGAAAAGGAAA CCGCGGGG GCGA CCCCGCGG TTTTCGCTTGCCCGG TERM 930 1505644 - 1505625 - T 100 -16.4 -4.20806 | opp_overlap 1505625, overlap 1505620 GACCCGAAAAGGAAA CCGCGGGG GCGA CCCCGCGG TTTTCGCTTGCCCGG Pden_4325 1506383 - 1505694 - | two component transcriptional regulator Pden_4326 1507097 - 1506387 - | phosphate uptake regulator, PhoU Pden_4327 1507912 - 1507115 - | phosphate ABC transporter, ATPase subunit Pden_4328 1509276 - 1507933 - | phosphate ABC transporter, inner membrane subunit PstA Pden_4329 1510463 - 1509273 - | phosphate ABC transporter, inner membrane subunit PstC TERM 931 1510518 - 1510490 - R 83 -15.2 -3.20878 | opp_overlap 1510509, overlap 1510485 1510505 GAACAGGGAAGGGAA GCGGCGCGGGGA ACACG CCCCCGCGCCGG GCGGATCACTGGGCG Pden_4330 1511552 - 1510524 - | phosphate ABC transporter, periplasmic phosphate-binding protein Pden_4331 1511791 - 1511549 - | hypothetical protein Pden_4332 1512903 - 1511803 - | chorismate synthase TERM 932 1513370 - 1513332 - R 82 -15.9 -3.15861 | opp_overlap 1513335 1513337 GATTACGTCCATGAA GGTGCCGGCAACGGCTG TATTT CAGCCGAGGCCGGCACG ATCACCCGCAACGAT Pden_4333 1513648 - 1513319 - | hypothetical protein TERM 933 1513545 - 1513508 - G 90 -20 -3.21747 | gap 1 CGACGGCATCACGAA GATGCGGGGCAAGG-GC CAGCT GCGCCCTGCCCCGCATC GGGCGGGAACCCGCC TERM 934 1514927 - 1514944 + G 73 -10.5 -3.85698 | TGGGTGCCCTGGGTC GGCGCGG CGAC CTGCGCC TTTCTGGCCGGACCC Pden_4334 1513676 - 1515139 + | amino acid permease-associated region Pden_4335 1516498 - 1515167 - | HlyD family type I secretion membrane fusion protein Pden_4336 1518473 - 1516482 - | type I secretion system ATPase TERM 935 1516538 - 1516584 + g 75 -8.6 -4.1891 | gap 2, overlap 1516539 1516541 1516546 TCATGGCTTGCCCGC CCGGCGCGGGCGGCTGCGCCGC GACGG GCGGCGC-GTTGCCGG-GCTGC TTTCTGTTGGCCAGC TERM 936 1516838 - 1516824 - G 72 -3.4 -4.56597 | opp_overlap 1516833, overlap 1516825 GGGGCTGCCGAAAAA CGCCCG TGC CAGGCC GATGCGCTGCTTCTG Pden_4337 1520503 - 1518470 - | hypothetical protein TERM 937 1520566 - 1520596 + r 80 -14.7 -3.17194 | opp_overlap 1520563 1520568, overlap 1520568 AAATGACCTAAAGTG AATCCTGCGCGGG ATGGC CCCGCGCAGGGTG TTCGCTTGCGCGACT TERM 938 1520568 - 1520594 + r 88 -17.3 -3.14878 | opp_overlap 1520568 1520563, overlap 1520566 ATGACCTAAAGTGAA TCCTGCGCGGG ATGGC CCCGCGCAGGG TGTTCGCTTGCGCGA TERM 939 1520594 - 1520568 - R 86 -15.8 -3.29591 | opp_overlap 1520566 1520568, overlap 1520563 ATGACCTAAAGTGAA TCCTGCGCGGGA TGG CCCCGCGCAGGG TGTTCGCTTGCGCGA Pden_4338 1522424 - 1520613 - | PE-PGRS family protein Pden_4339 1523038 - 1523739 + | response regulator receiver protein Pden_4340 1523736 - 1524257 + | hypothetical protein TERM 940 1524337 - 1524312 - T 100 -18.3 -4.28254 | gap 1 CGCCAATAGGGAAAA GGCG-GCGCGCC ATG GGCGCGCGCGCC GCTGCGTCAGGTCTC Pden_4341 1525063 - 1524344 - | sulfate ABC transporter, ATPase subunit Pden_4342 1525973 - 1525080 - | sulfate ABC transporter, inner membrane subunit CysW Pden_4343 1526805 - 1525966 - | sulfate ABC transporter, inner membrane subunit CysT TERM 941 1526626 - 1526642 + g 72 -13.7 -3.17051 | opp_overlap 1526620, overlap 1526624 GGACAGATACAGCGC CGCCCAG ACC CTGGGCG TATTGATCGTGGCCC TERM 942 1526744 - 1526778 + g 83 -8.5 -4.56597 | gap 1, opp_overlap 1526730 1526728 1526725, overlap 1526745 1526746 AGCATGGCCAGCGTG ATGCCCATGCCGAGGC CAAA GCC-CGGCATGGGGGA TTTTTGCAAGCGAAA TERM 943 1526745 - 1526777 + g 70 -12 -3.33744 | gap 1, opp_overlap 1526730 1526728 1526725, overlap 1526744 1526746 GCATGGCCAGCGTGA TGCCCATGCCGAGGC CAAA GCC-CGGCATGGGGG ATTTTTGCAAGCGAA Pden_4344 1527795 - 1526809 - | sulfate ABC transporter, periplasmic sulfate-binding protein Pden_4345 1528285 - 1529583 + | secretion protein HlyD family protein TERM 944 1530336 - 1530349 + G 71 -2.3 -4.56597 | overlap 1530337 TCGACCGGCTGATGC GCCTG CCGC TGGGC TTTTTCGAGAAGCGC Pden_4346 1529573 - 1531753 + | ABC transporter related Pden_4347 1532148 - 1533389 + | radical SAM domain-containing protein Pden_4348 1533474 - 1535159 + | integral membrane sensor hybrid histidine kinase Pden_4349 1535776 - 1535156 - | two component LuxR family transcriptional regulator mdoD 1537556 - 1535955 - | glucan biosynthesis protein D TERM 945 1536508 - 1536519 + g 76 -7.2 -4.25104 | overlap 1536479 CTTGGTGCGATCCAG GCGC TGGC GCGC TTTTCGTAGAAGACG TERM 946 1537271 - 1537254 - G 82 -4.1 -5.06414 | gap 1, overlap 1537256 GCCGGGGAAGAAAAA GCGCGCCT GCG AGG-ACGC CGTCCCATCCCCCCA Pden_4351 1539227 - 1537755 - | permease for cytosine/purines, uracil, thiamine, allantoin TERM 947 1539304 - 1539324 + r 83 -9.6 -4.44245 | opp_overlap 1539305, overlap 1539284 1539305 CTTCTGGATGTGGAA AGGGCCGC TTTGC GCGGCCCC TTTTCTCAATCGTGT TERM 948 1539323 - 1539305 - R 81 -13.1 -3.57144 | opp_overlap 1539284 1539304 1539305 TTCTGGATGTGGAAA GGGCCGC TTTGC GCGGCCC CTTTTCTCAATCGTG TERM 949 1539305 - 1539323 + r 74 -13.1 -3.25824 | opp_overlap 1539305, overlap 1539284 1539304 TTCTGGATGTGGAAA GGGCCGC TTTGC GCGGCCC CTTTTCTCAATCGTG Pden_4352 1541114 - 1539330 - | 5-oxoprolinase (ATP-hydrolyzing) Pden_4353 1543205 - 1541127 - | 5-oxoprolinase (ATP-hydrolyzing) TERM 950 1543286 - 1543260 - R 84 -13.7 -3.59979 | opp_overlap 1543273 1543279 CCGCTCGATTGGAAA GCCCCGCCCAA GCGCG TCGGGCAGGGC GATGCTGCCTTACTC Pden_4354 1544039 - 1543296 - | N-carbamoylsarcosine amidase Pden_4355 1544204 - 1545109 + | LysR family transcriptional regulator Pden_4356 1545761 - 1545213 - | cytochrome B561 Pden_4357 1545866 - 1546603 + | CDP-alcohol phosphatidyltransferase TERM 951 1547626 - 1547668 + G 79 -11.1 -4.08216 | gap 1, opp_overlap 1547655 GACCAGTTCACGCTG GCGG-CCGCCGACCGGCTGC TGCG GCAACAGGGCGGCGCACCGC TTTTCGCGCAGGTCG Pden_4358 1546600 - 1548177 + | sulfatase Pden_4359 1548197 - 1549192 + | twin-arginine translocation pathway signal Pden_4360 1549185 - 1549958 + | ABC transporter related TERM 952 1550703 - 1550738 + G 93 -17.4 -3.55444 | opp_overlap 1550679 TCCTGCTGGCCCCGC CCGGCACCGCGCGCCG TTCG CGCCGGGCGGCGCCGG TTTCGGCGCTCGCGG Pden_4361 1549955 - 1551499 + | binding-protein-dependent transport systems inner membrane component Pden_4362 1551496 - 1552545 + | glycosyl transferase, group 1 Pden_4363 1553200 - 1552589 - | deaminase-reductase domain-containing protein Pden_4364 1554592 - 1553381 - | ThiJ/PfpI domain-containing protein TERM 953 1555306 - 1555359 + G 74 -13 -3.53761 | CAGTCCAATCTCGGC GCCACGCT-GGACGTGCCGGCGCTGG CTGG CC-GCGCCGGCCTGACCGAGCGCAGC TTTCACCGCAAGTTC Pden_4365 1554607 - 1555581 + | AraC family transcriptional regulator TERM 954 1555826 - 1555841 + T 80 -11.8 -3.74693 | CGCTTGTCAGCGCTT GCCCGG CTTG CCGGGC TTTGCTCCGCTGCGG Pden_4366 1557880 - 1555817 - | DEAD/DEAH box helicase domain-containing protein TERM 955 1556231 - 1556243 + g 95 -10.5 -4.82901 | overlap 1556211 CGCGACCGGGGCCGG GCCGC GAT GCGGC TTTTTCTCACGCACG TERM 956 1556536 - 1556550 + g 74 -12.8 -3.55801 | CGCGCGGCGCCGAAG GCGCGG GGG CCGCGC TTTCCGACAGTTCCT Pden_4367 1558938 - 1558036 - | LysR family transcriptional regulator Pden_4368 1559113 - 1560438 + | C4-dicarboxylate transporter DctA TERM 957 1560500 - 1560443 - T 80 -14.9 -3.1505 | gap 2, overlap 1560498 AGCACGGTTGACGAA GTC-CCTC-GCGGAGTGACCGGGACCA GCGCGA CGGACCCGGTCGCCCCGCCGAGAAGAC GGCCTGCGCCTTCCC TERM 958 1560533 - 1560500 - T 78 -13.8 -3.21276 | opp_overlap 1560501, overlap 1560498 1560501 GCCCCGCCGAGAAGA CGGCCTGCGCCTTC CCTCCC GATGGCGCAGGCCT TTTCGTGTCAGGGGG TERM 959 1560532 - 1560501 - T 83 -17.3 -2.52623 | opp_overlap 1560501, overlap 1560500 1560498 CCCCGCCGAGAAGAC GGCCTGCGCCTTC CCTCCC GATGGCGCAGGCC TTTTCGTGTCAGGGG TERM 960 1560501 - 1560532 + T 100 -17.3 -4.34402 | opp_overlap 1560501 1560500 1560498 CCCCGCCGAGAAGAC GGCCTGCGCCTTC CCTCCC GATGGCGCAGGCC TTTTCGTGTCAGGGG Pden_4369 1561515 - 1560541 - | LysR family transcriptional regulator TERM 961 1560666 - 1560640 - G 78 -10.1 -4.21194 | gap 1 GGTCAGCAGCGAAAA CGGCCGCT-CCG CCCC CGGCAGCGGCAG GGTGCGGATCCAACC TERM 962 1561346 - 1561306 - G 75 -5.4 -4.57073 | gap 2, opp_overlap 1561337, overlap 1561331 1561332 CACCCGGTCGAAAAA GCGCACACCATGCCGCGCCT CCA AAGC-CGAGACGGCG-GCGC TGACCGCCGATTGCG Pden_4370 1561546 - 1562565 + | hypothetical protein Pden_4371 1562633 - 1563463 + | hypothetical protein Pden_4372 1563677 - 1563453 - | hypothetical protein TERM 963 1563741 - 1563716 - R 85 -12.5 -4.13767 | overlap 1563717 1563732 GCCCCCACTGCAAAA GGGGGACGGCC CGAA AGCCGTCCCCG AAGGCCGCGACGACG TERM 964 1563740 - 1563717 - R 82 -16 -3.08046 | overlap 1563716 1563732 CCCCCACTGCAAAAG GGGGACGGCC CGAA AGCCGTCCCC GAAGGCCGCGACGAC Pden_4373 1566018 - 1563763 - | TonB-dependent siderophore receptor Pden_4374 1566385 - 1566089 - | hypothetical protein Pden_4375 1566679 - 1566900 + | glutaredoxin-like protein NrdH Pden_4376 1566910 - 1567326 + | NrdI protein TERM 965 1568366 - 1568327 - g 82 -4.1 -5.07486 | overlap 1568333 1568334 CATCCGCAAGAAAAA GATCAACGCCCGCGCCT TCTTCC AGACGCTGGCCGAGATC CAGTTCGAAAGCGGC Pden_4377 1567308 - 1569434 + | ribonucleoside-diphosphate reductase, alpha subunit nrdF 1569481 - 1570470 + | ribonucleotide-diphosphate reductase subunit beta Pden_4379 1571435 - 1570467 - | bile acid:sodium symporter TERM 966 1571568 - 1571537 - g 78 -5.8 -4.56597 | opp_overlap 1571545 CCTGTTGGCGAAAAA CGGTCACAGCGG GGTCATGT CCGATGCAACCG TTCCGACCATGCGCC Pden_4380 1571526 - 1572773 + | GntR family transcriptional regulator Pden_4381 1574571 - 1572796 - | TrkA domain-containing protein TERM 967 1573339 - 1573303 - G 74 -12.9 -3.61398 | GGCGGCGGCGAAGAA GGCGATGGCGACCGG CACCAGC CCCGCCGCCGTCGCC GCCATGGCCACCGCC TERM 968 1574817 - 1574764 - H 70 -5.9 -4.25104 | gap 2, overlap 1574771 1574772 TCTGCCGGATGAAAA GGGAACACCGG-CGCGCCCAT-CGC CGCGAT GCGGACGGGCAAGGCCGGGGCTGCC CCCGCAACTGTAGGC Pden_4382 1575068 - 1576975 + | TonB-dependent receptor Pden_4383 1576969 - 1577805 + | periplasmic binding protein TERM 969 1578637 - 1578666 + G 79 -14.9 -3.28712 | CGGCGCGGCTGGTCC CGGCCGCGGCGCT GGGG GGCGCGGCGGTCG TTCTGGCCGCCGACA Pden_4384 1577802 - 1578797 + | transport system permease protein TERM 970 1578976 - 1579015 + G 72 -14.8 -2.87132 | CGGTCACAGCTCGCT GGCCGCGCTGCCGGTGCG CGAG CGCGCCCGCGCCGCCGCC TATATGCCACAGGGC Pden_4385 1578800 - 1579555 + | ABC transporter related Pden_4386 1581206 - 1579716 - | glycerol kinase TERM 971 1581277 - 1581251 - R 93 -17.2 -3.59979 | overlap 1581252 CCTGCGGATCGGAAA GGGGGGCGAGGC ACG GCCCCGCCCCCG CAAGGCATCACTGCC TERM 972 1581276 - 1581252 - R 100 -20.7 -2.75844 | overlap 1581251 CTGCGGATCGGAAAG GGGGGCGAGGC ACG GCCCCGCCCCC GCAAGGCATCACTGC Pden_4387 1583006 - 1581285 - | ABC sugar (glycerol) transporter, periplasmic binding protein Pden_4388 1583371 - 1583090 - | hypothetical protein Pden_4389 1584318 - 1583515 - | binding-protein-dependent transport systems inner membrane component Pden_4390 1585205 - 1584318 - | binding-protein-dependent transport systems inner membrane component Pden_4391 1586308 - 1585205 - | ABC transporter related Pden_4392 1587371 - 1586292 - | ABC transporter related glpD 1588969 - 1587386 - | glycerol-3-phosphate dehydrogenase TERM 973 1588957 - 1588939 - G 72 -5.8 -4.30576 | overlap 1588940 1588941 CGCCGATGATGAAAA GGTCGGCC TCG GGCCGCGC TGGTGCTGACACGCC TERM 974 1589281 - 1589261 - g 75 -9.6 -4.07885 | overlap 1589248 CACGGTCTGGCAAAA CCGGCCGG CAGCC CCGGCCCG TCCGCGAATTCCGCG Pden_4394 1589081 - 1589401 + | hypothetical protein Pden_4395 1589413 - 1590348 + | sulfate adenylyltransferase subunit 2 TERM 975 1591846 - 1591825 - g 83 -5.1 -4.83615 | gap 1, opp_overlap 1591826, overlap 1591826 1591827 TATCGTCGAGAAAAA GCTGCATGCC CTT GGCAAGCA-C TCCTTCCTGCTGGAC Pden_4396 1590350 - 1592272 + | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein TERM 976 1592333 - 1592301 - T 91 -16.3 -3.55447 | opp_overlap 1592290 TCACGGATGAGACAA GGGAACGGCGGCC GGGTTAG GGCCGCCGTTCGC ATCTCCGGGCCTTTG Pden_4397 1593675 - 1592380 - | hypothetical protein Pden_4398 1594810 - 1593677 - | FAD linked oxidase domain-containing protein Pden_4399 1596261 - 1594807 - | FAD linked oxidase domain-containing protein TERM 977 1596765 - 1596737 - g 78 -13.8 -3.55444 | gap 1, opp_overlap 1596720 1596719 GCGGCATCGTCGAAA GCGCGGCCGCGGC TTTG GCCGCG-CAGCGC GCGACCGAGGTGGAA Pden_4400 1596412 - 1597221 + | GntR domain-containing protein TERM 978 1597245 - 1597264 + T 77 -12.1 -3.6502 | opp_overlap 1597245 GGCCGGCAAGGAAAA GGCCGGG ACGAGG CCCGGCC TTTCGATAGCGCGTC TERM 979 1597264 - 1597245 - T 95 -12.1 -4.4078 | opp_overlap 1597245 GGCCGGCAAGGAAAA GGCCGGG ACGAGG CCCGGCC TTTCGATAGCGCGTC Pden_4401 1598243 - 1597278 - | hypothetical protein TERM 980 1597985 - 1598043 + g 70 -12.8 -3.30124 | TCAGGATCGTATAGC CGTCCGGGTCGGCCTTGGCGACCTGGGC CGC GCCCAGGCTGCCGCCGGCGCCGCCGACG TTCTGCACGATGACC TERM 981 1598198 - 1598245 + g 70 -9 -3.93383 | CTGCGAGGCCAAGCG CCATGGCGGCGCCCAGCAGCAG GCGG CGGGTGATGGATGCTGTCATGG TTTCCTCTCTGTTGA Pden_4402 1599774 - 1598266 - | hypothetical protein TERM 982 1599407 - 1599387 - G 70 -12.6 -3.34398 | overlap 1599385 1599400 GGGGCGGGGCAAAGA TCGCGACC AGGAA GGTCGCGA CGGTGCCGGCAAAGA Pden_4403 1600251 - 1599787 - | hypothetical protein TERM 983 1600303 - 1600275 - R 93 -19.5 -3.14132 | opp_overlap 1600294 CCCTGCTTGCAGCAA GCCCCGCCGCGCA TTG CGGGCGGCGGGGC GCCGGTTCAGTCGGC Pden_4404 1601284 - 1600310 - | hypothetical protein TERM 984 1601046 - 1601088 + g 72 -13.3 -3.21924 | overlap 1601047 CCGTCCGGATCGGCC TTGGCGACGTTGCCGGCGC CCAGC GTGCCGCCGGCGCCGCCGA TATTCTCGACGATGA TERM 985 1601489 - 1601532 + r 75 -9.4 -3.98842 | gap 1, overlap 1601490 CCTGCTCAGCCGGCA T-CGTCCTCGGCCGCATCCAG GAT CAGGCGGCGGTCGAGGCCGTA TTTCTGCATCTTCTC TERM 986 1601490 - 1601530 + r 87 -14.5 -3.57639 | overlap 1601489 CTGCTCAGCCGGCAT CGTCCTCGGCCGCATCCAG GAT CAGGCGGCGGTCGAGGCCG TATTTCTGCATCTTC Pden_4405 1602825 - 1601479 - | two component, sigma54 specific, Fis family transcriptional regulator Pden_4406 1604690 - 1602822 - | histidine kinase TERM 987 1604663 - 1604639 - G 77 -17.1 -2.66912 | opp_overlap 1604659, overlap 1604612 1604630 AGGCAAGGCACAGCA CCAGCGGCCAG CGG CCGGCCGCCGG CTTGCGCAAGGCCGG TERM 988 1604779 - 1604758 - R 78 -13.7 -3.27994 | opp_overlap 1604758 GGAATCTGACAGCAA GGCCGGCTG CGCG CAACCGGCC TTGCGTCGGGGTCAG Pden_4407 1606113 - 1604791 - | permease for cytosine/purines, uracil, thiamine, allantoin tranporter Pden_4408 1608346 - 1606211 - | 5-oxoprolinase (ATP-hydrolyzing) TERM 989 1607526 - 1607500 - G 79 -11.4 -4.03234 | GCTCGCCCAGATAAA GCGCCGCCCTGG GCG CCGAGGCGGGGC CGGAATTGATCGCAT TERM 990 1608357 - 1608406 + r 73 -11.9 -3.34398 | gap 1, overlap 1608354 TCCATCTTTGGCTGC CTCCG-GCGGGCCCGGCGCCGGGG GCT TCGCGCCCCCGGACCCCCGCGGAG TATTTGGAAAACGGA Pden_4409 1610177 - 1608429 - | 5-oxoprolinase (ATP-hydrolyzing) TERM 991 1610382 - 1610418 + H 91 -7.2 -5.07652 | gap 1, overlap 1610383 1610386 ATCCGCGCGGCAGGA TTTGCCCCGCGGCGCAG CCGC CTGCCCCGCGCG-CGAG TTTTCTTTTGCCCGA TERM 992 1611115 - 1611075 - g 85 -16.2 -3.58522 | gap 2 ACCACCAGGCGGAAA CCGACG-GCGGCGCGG-CCA CGG TGGTCCGCGCCGCGCATCTG AAGCGCGCGCAGGAC Pden_4410 1610483 - 1611439 + | helix-turn-helix domain-containing protein Pden_4411 1612588 - 1611443 - | L-carnitine dehydratase/bile acid-inducible protein F Pden_4412 1613799 - 1612588 - | acyl-CoA dehydrogenase domain-containing protein TERM 993 1612842 - 1612891 + g 100 -12 -4.91109 | opp_overlap 1612830, overlap 1612833 ACAGCCGCCCGACCC GCAGGCTGGCTTGCAGCCCCAG CGCGAT CTCGGTCTGCATGTCGGCCAGC TTTTTCTGGTAAAGC Pden_4413 1613891 - 1614793 + | LysR family transcriptional regulator TERM 994 1614793 - 1614814 + T 86 -15.1 -3.53012 | GGACGGCATGGGATA GCGGGCGGC CGGG GCCGTCCGC TTTCAGGCCGGGACC Pden_4414 1616097 - 1614817 - | 4-aminobutyrate aminotransferase TERM 995 1616132 - 1616156 + H 82 -6.6 -4.70169 | gap 1, opp_overlap 1616132 1616135, overlap 1616135 TGGAATCGGATTACA TCAT-GCTCAA TATA TTGAGCAATGA TTTTCTTCGATCTGC Pden_4415 1616178 - 1616819 + | XRE family transcriptional regulator Pden_4416 1618263 - 1616830 - | aldehyde dehydrogenase Pden_4417 1620475 - 1618631 - | GTP-binding protein LepA Pden_4418 1621392 - 1620472 - | hypothetical protein TERM 996 1621074 - 1621036 - G 70 -8.8 -3.85698 | gap 1, overlap 1621038 CGGCTCGCCCAGAAA CA-GCGCCGCGCCCAGC ACGATG GCCAGGGGCAGCGCCTG CATGATCGCCGAGGT TERM 997 1621733 - 1621764 + H 86 -15.2 -3.43288 | gap 1, opp_overlap 1621752, overlap 1621723 CTTGGGCCGGCCCAT GCCGCCCTGTCGC AATTGAG GCG-CAGGGCGGC TTCTGCTAAGCTTTG Pden_4419 1621789 - 1622154 + | hypothetical protein Pden_4420 1622162 - 1622842 + | silent information regulator protein Sir2 TERM 998 1622930 - 1622874 - f 80 -14.2 -3.34398 | overlap 1622872 TCCGTTGCCGAAATA CCCCGGGGGAACGCCGGACAGGCCCC GCCAA GGGGCCTGTCCGGCGTGGGGGCAGCG CCCCCGCCCCCGGCC Pden_4421 1623017 - 1624159 + | phosphonate metabolism protein PhnM Pden_4422 1624263 - 1624601 + | alkylhydroperoxidase Pden_4423 1626269 - 1624638 - | phosphoglucomutase Pden_4424 1628115 - 1626280 - | 4-alpha-glucanotransferase Pden_4425 1630201 - 1628108 - | glycogen debranching enzyme GlgX TERM 999 1628693 - 1628662 - G 78 -8.6 -4.36914 | gap 1, overlap 1628665 1628666 TGCCCTGCGACAAAA GCAGCGTCGCCAGCA GGT TGC-GGCGCCGGCGC GCGCGGGCGTCGAGG TERM 1000 1629148 - 1629116 - G 82 -13.4 -3.68073 | gap 1, overlap 1629136 GATCGCATCGAAGAA CGAG-GCGCTGCGGT CGAA ACCGCCGCGCACCCG CCGCCCCAGCGCCGT Pden_4426 1631604 - 1630201 - | glycogen/starch synthases, ADP-glucose type glgC 1632863 - 1631601 - | glucose-1-phosphate adenylyltransferase Pden_4428 1635102 - 1632907 - | glycogen branching enzyme Pden_4429 1637520 - 1635124 - | glycogen/starch/alpha-glucan phosphorylases Pden_4430 1638618 - 1637767 - | nicotinate-nucleotide pyrophosphorylase Pden_4431 1640180 - 1638615 - | L-aspartate oxidase Pden_4432 1641236 - 1640184 - | quinolinate synthetase Pden_4433 1641493 - 1642257 + | regulatory proteins, IclR Pden_4434 1642841 - 1642263 - | hypothetical protein Pden_4435 1644016 - 1642850 - | para-aminobenzoate synthase component I TERM 1001 1643262 - 1643242 - G 75 -9 -4.11216 | gap 1 TGTCCACGGCGAAAA GCTCGG-GC ACCC GCACCGAGC CCACGCGCGAGATGC Pden_4436 1645277 - 1644105 - | oxidoreductase domain-containing protein TERM 1002 1645298 - 1645333 + r 77 -16.2 -2.53263 | opp_overlap 1645321 GCTCCTTGCGGGATG TCCGGCGGCGGC AGGGAGGAGAAG GCCGCCGCCGGA TCGGTTGCGCCTAGA Pden_4437 1646393 - 1645344 - | oxidoreductase domain-containing protein Pden_4438 1647178 - 1646393 - | hypothetical protein Pden_4439 1648222 - 1647221 - | ABC transporter related Pden_4440 1649059 - 1648226 - | binding-protein-dependent transport systems inner membrane component Pden_4441 1650018 - 1649056 - | binding-protein-dependent transport systems inner membrane component Pden_4442 1651366 - 1650089 - | extracellular solute-binding protein TERM 1003 1650357 - 1650319 - G 71 -11.7 -3.54424 | CGGCATCGTCGTAAA GCGCGACCAC-GGTCGGCA GGT TGCCGTCCAGCAG-CGCGC GCCGCTTCTGCGCCT TERM 1004 1651090 - 1651112 + g 73 -12 -3.44848 | opp_overlap 1651072 1651090, overlap 1651088 GCGGCGCCCAGATCA CGTCGGTCTG ATA CAGGTCGACG TCTTTGGTCCCCGCC Pden_4443 1652429 - 1651797 - | electron transport protein SCO1/SenC Pden_4444 1653402 - 1652416 - | hypothetical protein Pden_4445 1653879 - 1653460 - | hypothetical protein Pden_4446 1655585 - 1653933 - | binding-protein-dependent transport systems inner membrane component TERM 1005 1655351 - 1655307 - G 86 -10.5 -4.62069 | CGCCCAGCCGAAAAA GCGCCGCCCTGGGAAATCGCA GGC CGCGACCAGCCAGGCCGTCGC CGTGCCGAGCGTCGC TERM 1006 1655562 - 1655543 - G 73 -16.4 -2.52464 | CCGCCTGCCAACCCA CCCCCGCG CGGA CGCGGGGG CGCTGTGCCAGTTCC Pden_4447 1656621 - 1655608 - | extracellular solute-binding protein TERM 1007 1657016 - 1657038 + G 70 -14.8 -2.74371 | overlap 1657014 1657037 CGGCGGCTTCCTGCC GCCCGAACGG CGC CCGGTCGGGC TGGTATTCCAGGATT TERM 1008 1657409 - 1657382 - g 74 -15 -3.04792 | gap 1 CCACGATCCCGAAGA GGCGATGCTGATG GGC CATC-GCATCGCC GTCATGCGCAAGGGC TERM 1009 1657478 - 1657490 + G 83 -4.7 -4.83615 | opp_overlap 1657464 CCGCCCGGCAGATCG GGGCG TCG CGGCC TTTTTCTCGGACCTG Pden_4448 1656714 - 1657835 + | ABC transporter related Pden_4449 1660461 - 1657849 - | molybdopterin oxidoreductase TERM 1010 1658211 - 1658182 - G 75 -4.8 -4.58395 | overlap 1658184 GCCATCGCGCAAAAA GGCCAGCCGCAC CTGCCC GCGCGTCCGGTC GTGCAGCACCAGCGG Pden_4450 1661327 - 1660470 - | formate/nitrite transporter TERM 1011 1661183 - 1661130 - G 82 -16 -3.38768 | gap 1, opp_overlap 1661144, overlap 1661145 GTAGAGCATGCAGAA GCCGACCGGGAACAACAGCGCGCCG ATCAG CGGCTCGCCGGTGTTCACGGT-GAC GGTCACGGCAAAGGC Pden_4451 1661675 - 1661340 - | nitrite reductase (NAD(P)H), small subunit Pden_4452 1664104 - 1661672 - | nitrite reductase (NAD(P)H), large subunit TERM 1012 1662675 - 1662713 + g 77 -14.5 -3.17212 | gap 1, opp_overlap 1662695 CATTTGCACATGCCG GCGGGCGCGGGCGCGACG AAGC CGTCGC-CCAGCGTCAGC TTCATCACCTGCTCG Pden_4453 1665328 - 1664120 - | major facilitator transporter TERM 1013 1665597 - 1665576 - R 81 -13.7 -3.53012 | gap 1 CGGCTCCGCCCGAAA GCCGGGCAGC CCC GC-GCCCGGC CTGCCTGCAAAACGC Pden_4454 1666785 - 1665613 - | putative nitrate transport protein Pden_4455 1667366 - 1666776 - | response regulator receiver/ANTAR domain-containing protein TERM 1014 1667821 - 1667842 + G 73 -12.9 -3.53012 | GAGCTTGGGCTGCTG CGCCCGGCG GAAC CGCCGGGGG TTTCACACCCCCGGA Pden_4456 1667596 - 1668348 + | MOSC domain-containing protein TERM 1015 1668499 - 1668520 + G 79 -7.1 -4.41616 | overlap 1668500 ATTATCCGACCCTGC GCGGCCGGC CGCT GCCGGGCGA TTTCTTTGCCGAGCT Pden_4457 1668345 - 1669181 + | pyridoxal kinase Pden_4458 1671560 - 1669248 - | RNA-binding S1 domain-containing protein TERM 1016 1669662 - 1669686 + g 95 -14.9 -4.19238 | opp_overlap 1669662 GCTTGCCGTGACGAA GCTCGGGCGCG GGT CGCGGCCGGGC TTTTCCAGTTCGGAC Pden_4459 1672110 - 1671634 - | hypothetical protein Pden_4460 1674299 - 1672770 - | carbohydrate kinase, YjeF related protein Pden_4461 1674441 - 1674779 + | nitrogen regulatory protein P-II Pden_4462 1674857 - 1676263 + | glutamine synthetase, type I TERM 1017 1676286 - 1676315 + F 100 -23.7 -3.53343 | opp_overlap 1676292, overlap 1676292 CAGGGACAGTGACAC GGGAAAGCCGCCC CACG GGGCGGCTTTCCC TTTGGGCGGGGCCTT TERM 1018 1676309 - 1676292 - f 84 -14.1 -3.64103 | opp_overlap 1676286 1676292 CAGTGACACGGGAAA GCCGCCC CACG GGGCGGC TTTCCCTTTGGGCGG TERM 1019 1676292 - 1676309 + F 88 -14.1 -3.84451 | opp_overlap 1676292, overlap 1676286 CAGTGACACGGGAAA GCCGCCC CACG GGGCGGC TTTCCCTTTGGGCGG Pden_4463 1676470 - 1677786 + | adenylosuccinate lyase Pden_4464 1677847 - 1678902 + | flagellar motor switch protein FliG TERM 1020 1678917 - 1678889 - f 93 -15.9 -3.84719 | AGGCGGAAACGGAAA GCCCGACCGGCTG ATC CGGCGGGTCGGGC AACCGGCTCCCCCCG TERM 1021 1679826 - 1679813 - g 79 -8.1 -4.4078 | overlap 1679784 CGCCTCCAAGGAAAA GGTGC AGCC GCACC TGTCGACCGGAGCCA Pden_4465 1679499 - 1680500 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 1022 1680561 - 1680524 - T 100 -20 -4.13945 | gap 1, opp_overlap 1680530, overlap 1680530 ACTCGGACGTGAAAA GCG-AAACGCGCCCCCG GTAAA CGGGGGCGCGTTTTCAC ATCCGGCCCAGGGCC TERM 1023 1680554 - 1680530 - T 100 -20 -3.93061 | opp_overlap 1680530, overlap 1680524 ACGTGAAAAGCGAAA CGCGCCCCCG GTAAA CGGGGGCGCG TTTTCACATCCGGCC TERM 1024 1680530 - 1680554 + T 100 -20 -4.13767 | opp_overlap 1680524 1680530 ACGTGAAAAGCGAAA CGCGCCCCCG GTAAA CGGGGGCGCG TTTTCACATCCGGCC Pden_4466 1680904 - 1680590 - | antifreeze protein, type I Pden_4467 1681035 - 1682078 + | dihydroorotase pyrE 1682075 - 1682746 + | orotate phosphoribosyltransferase TERM 1025 1682802 - 1682835 + F 88 -8.9 -4.62069 | gap 1, opp_overlap 1682802, overlap 1682803 TGGGTATTTAGGAAA CGGA-AAGGCCGGGTG CCG CACCTTGTCTTTTCCG TTTTTCAAATACCCA Pden_4469 1682979 - 1684478 + | replicative DNA helicase Pden_4470 1684475 - 1684837 + | hypothetical protein TERM 1026 1685593 - 1685605 + G 73 -10.5 -3.86015 | GTTCTACGCCTATCT GGGCG GCG CGCCC TTTGTCGGCCAGGTG Pden_4471 1684901 - 1686109 + | Bcr/CflA subfamily drug resistance transporter TERM 1027 1687095 - 1687118 + G 76 -3 -4.72986 | gap 1, overlap 1687097 TCGACCCTGCAACGC GG-CGGCGACC GGG GGGTGCCGTTC TTTTTCGTCCGCGTC TERM 1028 1687097 - 1687115 + G 79 -8 -4.47707 | overlap 1687095 GACCCTGCAACGCGG CGGCGACC GGG GGGTGCCG TTCTTTTTCGTCCGC TERM 1029 1687343 - 1687317 - g 83 -15 -3.6682 | CGGGACGTATCGAAA CCCGCGGGCGCC TTT GGCGCCCCCGTG CGCCGCTTCGCCATC Pden_4472 1686171 - 1687565 + | hypothetical protein Pden_4473 1687807 - 1689282 + | peptidase M23B Pden_4474 1689272 - 1689769 + | hypothetical protein TERM 1030 1689792 - 1689811 + T 100 -12.1 -4.7373 | overlap 1689751 ATCATCCGGCAGGAC GGGCGGC CCTTGT GCCGCCC TTTTTCATGACATCG Pden_4475 1690679 - 1689816 - | hypothetical protein TERM 1031 1690530 - 1690494 - G 85 -16.6 -3.63782 | overlap 1690513 GAACAGCAGGCCAAA GGCGG-GGGCGCGGCGGA AAT CCCGCCA-GCCCGCCGCC AGCACCGCCGGAATG Pden_4476 1691228 - 1690734 - | pantetheine-phosphate adenylyltransferase Pden_4477 1691775 - 1691338 - | signal-transduction protein Pden_4478 1692761 - 1691868 - | LysR family transcriptional regulator TERM 1032 1693044 - 1693026 - g 75 -10.2 -4.09685 | GCGCAGCGCCGAAAA GGCGCAGG TCG CCTGGGCC GCCACCAACCCGCAG Pden_4479 1692871 - 1694370 + | methylmalonate-semialdehyde dehydrogenase TERM 1033 1694380 - 1694405 + F 100 -23.3 -4.07568 | opp_overlap 1694371 GACTAAGCGACTTTC GGGCGGGGGCG GAGA CGCCCCCGCCC TTTTCCGCGCAAGCC TERM 1034 1695262 - 1695297 + G 76 -13.3 -3.53224 | gap 1 GCGCAGGCGGCGCTG GACGCGACGCTGCGCT ACATG GGCG-AGCGTCGCGCC TTTGGCCAGACGCTG Pden_4480 1694494 - 1695639 + | acyl-CoA dehydrogenase domain-containing protein Pden_4481 1695640 - 1696647 + | enoyl-CoA hydratase/isomerase TERM 1035 1696944 - 1696918 - g 93 -17.2 -3.57144 | CGGTGGACGTGGAAA GCGCCCGCGCGG TGG CCGGGCAGGCGC AGGCGGCGGGCCTGG TERM 1036 1696998 - 1697044 + G 78 -13.5 -3.53811 | overlap 1696988 GGCGGGGTCGGCGGT GCCACCGCCGGCACGCTGACC TTCAT GGTCGGCGGTTCGGCCGAGGC TTTCGACAAGGTGAA Pden_4482 1696644 - 1697519 + | 3-hydroxyisobutyrate dehydrogenase Pden_4483 1697600 - 1697908 + | hypothetical protein Pden_4484 1699548 - 1697905 - | DNA repair protein RecN Pden_4485 1700398 - 1699556 - | putative ComL lipoprotein TERM 1037 1700510 - 1700499 - R 72 -7.2 -4.28049 | overlap 1700500 1700507 1700508 CGCAAAATGCCAAAA CCGC AAAA GCGG CGGCACGGCCGTCAC TERM 1038 1700549 - 1700507 - R 81 -9.7 -4.28049 | gap 1, overlap 1700499 1700500 1700508 GCCAAAACCGCAAAA GCGGCGGCACGGCCGTCACC TTCA GGCGACGGCCA-GCTGGCGG GCGCGGGGCGCAAGC TERM 1039 1700548 - 1700508 - R 72 -13.2 -3.16106 | gap 1, overlap 1700499 1700500 1700507 CCAAAACCGCAAAAG CGGCGGCACGGCCGTCACC TTCA GGCGACGGCCA-GCTGGCG GGCGCGGGGCGCAAG lpxC 1701466 - 1700528 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 1040 1701667 - 1701650 - R 95 -12.7 -4.4267 | TTTCAAAATGGAAAA GGACCGC CGAA GCGGTCC CCTCTCAATCCGTCG Pden_4487 1703336 - 1701702 - | cell division protein FtsZ Pden_4488 1704891 - 1703557 - | cell division protein FtsA Pden_4489 1705935 - 1704913 - | cell division protein FtsQ Pden_4490 1706858 - 1705923 - | D-alanine--D-alanine ligase Pden_4491 1707897 - 1706977 - | UDP-N-acetylenolpyruvoylglucosamine reductase Pden_4492 1708444 - 1708076 - | hypothetical protein Pden_4493 1708712 - 1708449 - | hypothetical protein murC 1710136 - 1708709 - | UDP-N-acetylmuramate--L-alanine ligase murG 1711221 - 1710133 - | N-acetylglucosaminyl transferase TERM 1041 1710497 - 1710481 - G 78 -5.7 -4.57073 | overlap 1710483 CACGTCGTCGAAAAA GGGCCGC ACC ACGGCGC TGATGCCGGCACTCG Pden_4496 1712387 - 1711218 - | cell division protein FtsW Pden_4497 1712911 - 1712522 - | DoxX family protein TERM 1042 1713082 - 1713096 + H 80 -8.5 -4.41494 | overlap 1713063 CTTGCCGCCTGTTCC GGGGG ACGCG CCCCC TTTTCCTTGGCCCTG Pden_4498 1713154 - 1714056 + | hypothetical protein Pden_4499 1714056 - 1714982 + | homoserine O-succinyltransferase Pden_4500 1714985 - 1715908 + | hypothetical protein Pden_4501 1715930 - 1716865 + | hypothetical protein Pden_4502 1716908 - 1717990 + | ABC polyamine transporter, periplasmic substrate-binding protein TERM 1043 1718012 - 1718034 + F 81 -14.1 -3.55444 | overlap 1718013 CGCCCTTTCTTGCCG TGCCCCGCC CCCTT GGCGGGGCG TTTCGCCGGTGGAAC TERM 1044 1718013 - 1718033 + F 78 -15.4 -2.73124 | overlap 1718012 GCCCTTTCTTGCCGT GCCCCGCC CCCTT GGCGGGGC GTTTCGCCGGTGGAA TERM 1045 1718072 - 1718107 + F 72 -9 -4.12188 | opp_overlap 1718072 1718076, overlap 1718081 TGAGTATTTGAGGAA CGAAGAAGGCCGGG CGGCGCAT CCCGGTTTTCTCCG TTTTCCAAATACTCC TERM 1046 1718081 - 1718098 + F 76 -5.5 -4.54477 | opp_overlap 1718076 1718072, overlap 1718072 GAGGAACGAAGAAGG CCGGG CGGCGCAT CCCGG TTTTCTCCGTTTTCC TERM 1047 1718174 - 1718154 - f 88 -15.5 -3.31144 | opp_overlap 1718152 1718156 CGCGCAGCGGGACAA GAGGGGAAC GGC GTTCCCCTC CCTTGCGTGCCGAAA TERM 1048 1718695 - 1718652 - g 75 -10.1 -4.08216 | gap 1, overlap 1718653 GGATCTGGGGCAAAA GGCCCGCGC-CGCCGCAGCC GTGCT GGCCGAGGCGAGCGCCGAGC GCAAGCATGCCGCCC TERM 1049 1718808 - 1718796 - g 72 -6.2 -4.26076 | TTACGCCGAGGAAAA GGGC CTTTC GCCC GCCATGCTGGACCGG Pden_4503 1718596 - 1719867 + | gamma-glutamyl phosphate reductase Pden_4504 1720567 - 1719911 - | hypothetical protein TERM 1050 1720541 - 1720483 - G 74 -13 -3.60627 | gap 1, opp_overlap 1720494 1720495 1720496 CGATGTCATGGCAAA GCCGCGAACCGACCAGCGCCGCCAGGC GCTCGG GCGCGATGGCGCCGGGGGGTTCG-GGC GGGCAGTGGATTGTC Pden_4505 1720608 - 1720787 + | hypothetical protein Pden_4506 1720925 - 1721704 + | hypothetical protein TERM 1051 1722394 - 1722426 + G 72 -14.1 -3.23216 | GACCTGGGGCCGCAT TTGCTGGCGGTGCTG GCC CAGCCCCGCCAGGGA TTCGTCATCGTGCGG Pden_4507 1721701 - 1722534 + | phospholipid/glycerol acyltransferase Pden_4508 1724461 - 1722683 - | TrkA domain-containing protein Pden_4509 1725381 - 1724563 - | hypothetical protein Pden_4510 1726982 - 1725447 - | 2-polyprenylphenol 6-hydroxylase TERM 1052 1726878 - 1726910 + g 74 -11.3 -3.72695 | gap 2 CGCCGCGATGCGGAT GCGG-GC-GGGCGCG TTCAC CGCGTCCAGCGCCGC TTTCATCGCGCCCGT Pden_4511 1727736 - 1726984 - | ubiquinone/menaquinone biosynthesis methyltransferases TERM 1053 1727791 - 1727779 - H 71 -10.5 -3.60234 | CCAGATAGTCCGAAA GCGCG CCG CGCGC CATAGCTGGGGACGC TERM 1054 1728597 - 1728655 + G 100 -12.5 -4.83615 | gap 3 GCGAGGGTGCGCCCT GCCCGA-CG-CCGGGCTGCACGG-GCAC GGTCCA GCGCATCGTGCAGTCCGGGCGGTCGAGC TTTTTCTGCCCGCTC Pden_4512 1727837 - 1728682 + | formamidopyrimidine-DNA glycosylase Pden_4513 1728790 - 1729566 + | enoyl-CoA hydratase/isomerase TERM 1055 1729768 - 1729747 - g 84 -5 -5.0538 | overlap 1729748 CCCCAGTCGAAAAAA CGCGCCCG CCAGCT CGAGCGCC GCACCGCCGTCAACA rpsT 1729720 - 1729989 + | 30S ribosomal protein S20 SEQUENCE gi|119387240|ref|NC_008688.1| Paracoccus denitrificans PD1222 plasmid 1, complete sequence (length 653815) Pden_4515 511 - 65 - | 3-demethylubiquinone-9 3-methyltransferase Pden_4516 931 - 536 - | 3-demethylubiquinone-9 3-methyltransferase Pden_4517 988 - 1506 + | MarR family transcriptional regulator Pden_4518 1887 - 1528 - | regulatory protein, ArsR Pden_4519 1936 - 2382 + | activator of Hsp90 ATPase 1 family protein TERM 1 2411 - 2460 + F 82 -7 -4.63218 | gap 2, overlap 2412 GTGCCTGCCCTGTTC CGTCGTCGGGTCCCGGGCGGTCCG GCGC CGGACC-CGCTTG-CCCGGCGACA TTTTCTTCAAGACGG Pden_4520 2524 - 2937 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2 3166 - 3178 + G 72 -3.3 -4.59511 | opp_overlap 3157 GAGGAAGGCGCCCTG CGGCT GAG AGGCG TTTTTCAGACCTATT Pden_4521 3076 - 4578 + | hypothetical protein Pden_4522 5118 - 4693 - | glyoxalase/bleomycin resistance protein/dioxygenase Pden_4523 5861 - 5412 - | MerR family transcriptional regulator TERM 3 5995 - 6017 + G 71 -2.7 -4.56597 | gap 1, overlap 6002 AGCCTGTTGCGCTGT GTCGCTGCTT GCCG GGGCAG-GAC TTTTTGCGGCCGCCG Pden_4524 5936 - 6553 + | hypothetical protein Pden_4525 6621 - 7568 + | MarR family transcriptional regulator Pden_4526 8479 - 7718 - | methyltransferase type 11 TERM 4 7818 - 7797 - G 71 -2.9 -4.59109 | CAGATCCGCGAAAAA TCCCGCACG AAGG CATCCAGGA TCTCTGTCCTCCCGG Pden_4527 8966 - 8469 - | MarR family transcriptional regulator Pden_4528 10142 - 9105 - | helix-turn-helix domain-containing protein Pden_4529 10534 - 12111 + | Na+/solute symporter Pden_4530 12108 - 13175 + | 2-dehydropantoate 2-reductase Pden_4531 13168 - 14097 + | hypothetical protein Pden_4532 14111 - 14359 + | hypothetical protein Pden_4533 14488 - 15000 + | ECF subfamily RNA polymerase sigma-24 factor Pden_4534 15000 - 15950 + | putative FecR Pden_4535 16049 - 18385 + | TonB-dependent siderophore receptor TERM 5 18455 - 18437 - f 71 -9.6 -3.7511 | overlap 18432 18440 CGCCCTACAAGAGAA GGATTCCC ACA AGGAATCC CGTGGGATAAACTTC Pden_4537 18797 - 19075 + | hypothetical protein Pden_4538 19492 - 19142 - | hypothetical protein TERM 6 20356 - 20345 - g 73 -7.2 -4.12188 | GCAGCAGGTCGAAAA CCGG CTCG CCGG ATGCGGTCTGACACT TERM 7 20450 - 20494 + G 70 -4.2 -4.45117 | gap 1, overlap 20451 GGTTGCTTTCGACTT TCTCGGCTACAGGTT-CCAGC CCCG GCTGGCGATCTGGCGCGGAGG TTTGTTTGGCGTATC Pden_4539 19602 - 20843 + | RNA-directed DNA polymerase (Reverse transcriptase) TERM 8 20886 - 20923 + G 77 -11.3 -3.83724 | gap 1 TTCACGTACGGTTCT GGGAG-CGCGTGAGGG TGAAATC CCCTCGCGCGACTCGC TTTCCGTTGTATCGT Pden_4540 20858 - 21871 + | transposase IS66 Pden_4541 22283 - 21921 - | hypothetical protein Pden_4542 23213 - 22329 - | RpiR family transcriptional regulator Pden_4543 23335 - 24075 + | N-formylglutamate amidohydrolase Pden_4544 24075 - 24611 + | tripartite ATP-independent periplasmic transporter DctQ TERM 9 24718 - 24751 + G 72 -8.7 -4.10161 | CGTGGTGGCGGCGTT GCTCCTGTGGGGGCC GGGC GGCACCGACATGGGC TTTTCGGCGGTGATG TERM 10 25531 - 25552 + G 73 -10.1 -3.86015 | gap 1 CGACGGGCTGGGGGC CGGCCGCGCC ATC GG-GCGGCTG TTTCTGGGCGAGATG Pden_4545 24608 - 25933 + | TRAP C4-dicarboxylate transport system permease DctM subunit Pden_4546 25957 - 26997 + | TRAP dicarboxylate transporter- DctP subunit TERM 11 27009 - 27032 + F 75 -15.3 -2.71364 | opp_overlap 26971 26970 GTGATCACTGCGACT GGGCGCACC CGCGAT GGTGCGCCC TCCTTACCGGAGTCA TERM 12 27858 - 27869 + G 81 -7.2 -4.56775 | opp_overlap 27866 27867 TCCCTGTTCAGGGAC GGCG AGAA CGCC TTTTTCGACGAGAAT Pden_4547 27051 - 28412 + | glutamate--ammonia ligase Pden_4548 28450 - 29838 + | aldehyde dehydrogenase Pden_4549 29835 - 30980 + | iron-containing alcohol dehydrogenase TERM 13 30987 - 31018 + F 100 -14.4 -4.30978 | gap 1, opp_overlap 30984 30986, overlap 30988 TGCATGTGAATATAT CGCGCGGCCCCGCGA TAC TC-CGGGGCCGTGCC TTTTCCTGCCTTCGC TERM 14 30988 - 31017 + F 91 -17.9 -3.18105 | gap 1, opp_overlap 30984 30986, overlap 30987 GCATGTGAATATATC GCGCGGCCCCGCGA TAC TC-CGGGGCCGTGC CTTTTCCTGCCTTCG Pden_4550 31432 - 33387 + | acetate--CoA ligase TERM 15 33399 - 33378 - f 81 -12.9 -3.61709 | opp_overlap 33388 33389 33390, overlap 33374 CGAAAACAGAATGAA CCGCGCCTG AACC CGGGCGCGG AAGACGCCCCCGGCC TERM 16 33388 - 33414 + F 74 -4.9 -4.56597 | opp_overlap 33378 33374 33404, overlap 33389 33390 ATGAACCGCGCCTGA ACCCGGGCGCG GAAGA CGCCCCCGGCC TTTTTCGCCGGGGGA TERM 17 33466 - 33456 - f 70 -2.4 -4.62904 | overlap 33446 AAACACGTCGAAAAA GACG GAA CGAC ATGTCTGAAAAAGGG Pden_4551 33496 - 33753 + | hypothetical protein TERM 18 33798 - 33812 + G 72 -8.5 -4.04206 | ACCTCATCGTCATCG GCGCG TCCTT CGCGC TTTATATCGGCATCG Pden_4552 33764 - 35575 + | Na+/solute symporter TERM 19 35607 - 35580 - f 100 -19.8 -3.18383 | opp_overlap 35581, overlap 35581 AGGCCCACTGACGAA CGGCCGCGCCCC CTGC GGGGCGCGGCCT TTCCGCCAATCGGCA TERM 20 35606 - 35581 - f 100 -23.3 -2.50816 | opp_overlap 35581, overlap 35580 GGCCCACTGACGAAC GGCCGCGCCCC CTGC GGGGCGCGGCC TTTCCGCCAATCGGC TERM 21 35581 - 35606 + F 100 -23.3 -3.54424 | opp_overlap 35581 35580 GGCCCACTGACGAAC GGCCGCGCCCC CTGC GGGGCGCGGCC TTTCCGCCAATCGGC TERM 22 35978 - 35991 + G 78 -9.5 -4.15044 | opp_overlap 35928 TTGATCGGCAGCCAT CGCGC GGTG GCGCG TTTCTTCGACCGCAG TERM 23 36833 - 36852 + G 81 -12.8 -3.9122 | opp_overlap 36807, overlap 36825 CCGCGCTGGCGCCAG CCGCGCCG CGTC TGGCGCGG TTATTTCCACGACTG Pden_4553 35633 - 37444 + | cyclic nucleotide-binding protein Pden_4554 37452 - 37949 + | hypothetical protein Pden_4555 37949 - 38320 + | response regulator receiver protein Pden_4556 38314 - 40293 + | DNA polymerase III, epsilon subunit Pden_4557 41701 - 40436 - | peptidase S8 and S53, subtilisin, kexin, sedolisin Pden_4558 41802 - 42293 + | ECF subfamily RNA polymerase sigma-24 factor TERM 24 42598 - 42644 + G 78 -16.5 -3.09635 | gap 1 CAATCTCAACCGCAG GCCCTGGC-TGGCTGCGGCGGC CTCG GCCGCCGTCGTCGCGCTGGGGC TTGGCTGGTGGCAAT TERM 25 42905 - 42878 - g 72 -13.4 -3.14344 | opp_overlap 42835, overlap 42902 GATGGCTGGCAGGAA CGCTTTGCCGCG ACGG CGCAGCAAGGCG GCGCGGACTATCGCC Pden_4559 42290 - 43018 + | hypothetical protein Pden_4560 43068 - 44735 + | sodium/sulphate symporter TERM 26 44758 - 44774 + F 74 -5 -4.58395 | opp_overlap 44757 CAAACGCGATGACAG GGCGGC ACGGG GCGGCC TTTTTCACGCCTGGG TERM 27 45602 - 45656 + G 78 -13.4 -3.57462 | gap 1 CACGGGCCGGGACGT GGCGCCGATGCCGGGCGCCGGGGCC TCGGGC GGGCTTGGCGCCGGGC-TGGTCGCC TTTGCCGGTGCGGTG Pden_4561 44868 - 46031 + | glycerate kinase Pden_4562 46125 - 46862 + | hemolysin-type calcium-binding region Pden_4563 47964 - 47053 - | LysR family transcriptional regulator Pden_4564 48060 - 48686 + | TrpR binding protein WrbA TERM 28 49602 - 49628 + G 70 -3.5 -4.46212 | overlap 49603 49606 49627 GCGTCCTGTTCTCGG CCGTCGGCGGG CTGAT CCCGGCGGTGC TTTTGTCCTCGGCAC Pden_4565 48686 - 49864 + | major facilitator transporter Pden_4566 51039 - 49852 - | hypothetical protein Pden_4567 53917 - 51125 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Pden_4568 54000 - 54425 + | hypothetical protein Pden_4569 54428 - 54691 + | hypothetical protein Pden_4570 55594 - 54785 - | hypothetical protein Pden_4571 56352 - 55723 - | NAD-dependent epimerase/dehydratase Pden_4572 57800 - 56439 - | major facilitator transporter Pden_4573 57816 - 58733 + | hypothetical protein TERM 29 59440 - 59457 + G 82 -8.3 -4.4009 | overlap 59432 GCCTGCCGCGAGCTT GGCGTCG CCTT CGTCGCC TTTTCTCCGCTGGGC Pden_4574 58879 - 59838 + | aldo/keto reductase Pden_4575 60876 - 59908 - | LysR family transcriptional regulator TERM 30 60129 - 60088 - G 71 -10.2 -3.71848 | gap 3 CTGCTTGATGAAGAA GCCGAT-GCCCGCGCCCTCCA GCA CGGC-GGCGCGGGCGAT-GGC GGCCTCGTCCAGGAT Pden_4576 60909 - 61229 + | hypothetical protein Pden_4577 61229 - 62008 + | short chain dehydrogenase Pden_4578 62806 - 62405 - | cupin 2 domain-containing protein TERM 31 62750 - 62762 + gT 79 -2.6 -4.84529 | CGCCAGGTTTATCGC GTCG CTCAT CGGC TTTTTCCGTTTGTCG Pden_4579 63167 - 62781 - | HxlR family transcriptional regulator TERM 32 63058 - 63037 - GH 100 -17.3 -3.86897 | CGGACCTCGTAGAAA CGCTGCGGG CCGC CCCGCAGCG ACCAGAGGATCAGCA TERM 33 63702 - 63725 + G 93 -18.2 -3.61103 | GGCGCGGGTTTCGAT GTCGCGCAGG TCGA CCTGCGCGAC TTTGCCATGCCGTTC Pden_4580 63261 - 64172 + | NADPH-dependent FMN reductase Pden_4581 65091 - 64195 - | LysR family transcriptional regulator Pden_4582 65190 - 65714 + | hypothetical protein Pden_4583 66007 - 66354 + | hypothetical protein Pden_4584 66478 - 67236 + | short chain dehydrogenase TERM 34 67410 - 67390 - T 75 -7.5 -4.25053 | overlap 67387 TCACAAGAGAAATAA CGCGTTGCA TCA TGCAGCACG CTTCGACCAACCGCA TERM 35 67506 - 67533 + T 100 -12.6 -5.01732 | opp_overlap 67509, overlap 67507 67509 ACCTGCGGCATTTGC AAAGGCCGCCCC ATTT GGGGCGGCCTGC TTTTTTCACCCGGTT TERM 36 67507 - 67532 + T 90 -16.1 -3.60316 | opp_overlap 67509, overlap 67506 67509 CCTGCGGCATTTGCA AAGGCCGCCCC ATTT GGGGCGGCCTG CTTTTTTCACCCGGT TERM 37 67530 - 67509 - T 93 -18.7 -3.57144 | opp_overlap 67507 67506 67509 TGCGGCATTTGCAAA GGCCGCCCC ATTT GGGGCGGCC TGCTTTTTTCACCCG TERM 38 67509 - 67530 + T 93 -18.7 -3.37655 | opp_overlap 67509, overlap 67507 67506 TGCGGCATTTGCAAA GGCCGCCCC ATTT GGGGCGGCC TGCTTTTTTCACCCG groEL 69196 - 67559 - | chaperonin GroEL groES 69524 - 69237 - | co-chaperonin GroES Pden_4587 69832 - 70299 + | hypothetical protein Pden_4588 70413 - 70760 + | Hsp20 family heat-shock protein Pden_4589 70744 - 70947 + | hypothetical protein TERM 39 71001 - 70974 - T 80 -4.8 -4.74706 | gap 1 CCCAAGACGCAAAAA GGCGCAGGCGC AGGTCAA GCGCAT-CGCC ATCAAGGGCTGAGCC Pden_4590 72935 - 71280 - | acyl-CoA synthetase Pden_4591 73367 - 72975 - | rhodanese domain-containing protein Pden_4592 73948 - 73370 - | uncharacterized peroxidase-related enzyme Pden_4593 76260 - 73945 - | molybdopterin guanine dinucleotide-containing S/N-oxide reductases Pden_4594 77817 - 76273 - | hypothetical protein TERM 40 77014 - 76987 - G 71 -11.2 -3.66844 | opp_overlap 77001 77006 GGGATAGGCGAAGAA GCCGACCGGGGC ATTG GCGCCGATCAGC ACCAGTTGCTCGGTT TERM 41 77549 - 77563 + g 73 -12.8 -3.42503 | TTGACCATGGGCGAG CGCGCG CGC CGCGCG TTGTGCATGTTGGCA Pden_4595 79304 - 77814 - | carbohydrate kinase, FGGY Pden_4596 79981 - 79304 - | Fis family transcriptional regulator Pden_4597 81036 - 79990 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_4598 82232 - 81033 - | L-carnitine dehydratase/bile acid-inducible protein F Pden_4599 82996 - 82229 - | putative CoA transferase, subunit B TERM 42 82891 - 82834 - G 74 -14.7 -3.07816 | gap 1 GCTCGACCGAGCCAA GGATCGACAGCCGCACCGGACGCTGTCC GTC GTCCAGCGCCCGGCGCAGC-ATCGCGCC GGCGGCAGGCATGGG Pden_4600 83802 - 82993 - | putative glutaconate CoA-transferase, subunit A Pden_4601 84009 - 85157 + | ABC transporter related Pden_4602 85154 - 86929 + | binding-protein-dependent transport systems inner membrane component Pden_4603 86961 - 88037 + | putative ABC transporter binding protein component TERM 43 88110 - 88088 - f 100 -16.2 -4.53163 | overlap 88090 GCATATATGACAAAA GGGCGGGCCG CGC CGGCCCGCGC CAGCAAGGGAAGACC TERM 44 88108 - 88090 - f 83 -17.4 -2.57982 | overlap 88088 ATATATGACAAAAGG GCGGGCCG CGC CGGCCCGC GCCAGCAAGGGAAGA Pden_4604 88135 - 88890 + | regulatory proteins, IclR Pden_4605 89102 - 89422 + | hypothetical protein Pden_4606 89556 - 90788 + | radical SAM domain-containing protein Pden_4607 90785 - 92224 + | uracil-DNA glycosylase superfamily protein Pden_4608 92297 - 92779 + | putative general stress protein 26 TERM 45 94256 - 94234 - g 72 -9.1 -4.08394 | opp_overlap 94234, overlap 94222 ACATCTGGCCGAAAA GATCGCCGC CCTGC GCGACGACC TTCTGGCAGAGCATC Pden_4609 93059 - 94534 + | phospholipase D/transphosphatidylase Pden_4610 95784 - 94555 - | FAD dependent oxidoreductase Pden_4611 97948 - 95816 - | catalase Pden_4612 98287 - 99021 + | peptidoglycan binding domain-containing protein Pden_4613 99235 - 99792 + | hypothetical protein Pden_4614 99830 - 100234 + | hypothetical protein Pden_4615 100218 - 101297 + | PHB depolymerase family esterase Pden_4616 102804 - 101404 - | dihydropyrimidinase TERM 46 101613 - 101641 + g 71 -2.2 -4.62069 | overlap 101614 CCCAGATGGCGATGT CGGCATCCGCGC CGACC GCGATGGTGCCC TTTTTCGGGTAAAGG TERM 47 102202 - 102185 - G 84 -4.8 -5.08824 | gap 1 GTGGCATGGAAAAAA GGCGCGG TCCTG CC-CGCC TGCTCAAGCTGGTCG Pden_4617 103520 - 102801 - | GntR family transcriptional regulator Pden_4618 104329 - 103562 - | Asp/Glu racemase TERM 48 104654 - 104705 + G 72 -4.2 -4.56775 | gap 1, overlap 104686 104688 CTGGCATGGTGCTGC TTGCCGGCGCCACGC-TGGCCGCAT CCG ATACGCCCCTGCGCGTCGCAGGTAA TTTTTCGCAGAACAT Pden_4619 104611 - 105654 + | TRAP dicarboxylate transporter- DctP subunit Pden_4620 105705 - 106304 + | hypothetical protein Pden_4621 106301 - 107602 + | TRAP dicarboxylate transporter, DctM subunit Pden_4622 107603 - 109075 + | amidohydrolase Pden_4623 109319 - 109621 + | dipeptidase family protein Pden_4624 110152 - 109691 - | AsnC family transcriptional regulator TERM 49 110346 - 110358 + G 75 -4.7 -4.55287 | opp_overlap 110346 TCGAAGATGTCGAAA GCGGC CTT GACGC TTTTATCTGCATCCA Pden_4625 110273 - 111340 + | Glu/Leu/Phe/Val dehydrogenase, dimerisation region Pden_4626 111423 - 112142 + | hypothetical protein Pden_4627 112646 - 112278 - | hypothetical protein TERM 50 112637 - 112662 + g 71 -9.7 -3.73224 | gap 1 ACCGGCGGGCCGCTT CGCG-CCGCATC GGC GATGCTGCCGCG TTTGATCAGCCATAG Pden_4628 113948 - 112710 - | D-amino-acid dehydrogenase Pden_4629 116208 - 113965 - | peptidase S9 prolyl oligopeptidase TERM 51 114329 - 114308 - G 78 -10.1 -4.16842 | overlap 114309 CCGACGGTGAAGAAA TCGGGATGG ACCG CCATCCCGC GAACCGTCGCGTAGC TERM 52 115722 - 115693 - G 72 -9.1 -4.02132 | overlap 115685 GTCGAAACCGAGAAA GCCGCCGTAGCCG TTCC CGGCTTCGCCGTC GCTGGTCAACGGACG Pden_4630 116921 - 116301 - | TetR family transcriptional regulator Pden_4631 117112 - 118494 + | major facilitator transporter Pden_4632 118543 - 119655 + | beta-lactamase TERM 53 120240 - 120251 + G 70 -3.6 -4.41348 | GGCGCTGATCGACTG CCGG ATGA TCGG TTTCTTTCCGACCAC Pden_4633 119665 - 121167 + | hypothetical protein Pden_4634 121265 - 122743 + | leucyl aminopeptidase Pden_4635 122749 - 123795 + | peptidase M42 family protein Pden_4636 124022 - 125368 + | carbohydrate-selective porin OprB TERM 54 125445 - 125408 - f 83 -5.5 -4.86731 | opp_overlap 125410, overlap 125403 125409 TGCCCTGAAATAAAA GCCTTCCCGATGACC ATGCGACG GGCCATCGGGACAGT TTTCAAGATCGCTCG Pden_4637 125503 - 126549 + | ornithine cyclodeaminase TERM 55 126707 - 126752 + G 82 -11.7 -4.13767 | gap 1 GCGAGGCGTCCAAGT CCCAACGCCATCTCATC-CGGC CCG GCCGAGAGGGGCTGGCGGCGGG TTTTCCCATCGACGC Pden_4638 126559 - 126942 + | hypothetical protein Pden_4641 129550 - 128042 - | hypothetical protein Pden_4642 131342 - 129609 - | hypothetical protein TERM 56 129775 - 129795 + g 86 -10.3 -4.57569 | overlap 129776 129779 CCGCCGCCATTGGTC TGCCCCGGC ACT GCCGAGGCG TTTTTCAGGAACTGC Pden_4643 133168 - 131369 - | tyrosinase TERM 57 132676 - 132639 - G 79 -2.5 -4.88495 | overlap 132640 AGATACAGAAGAAAA CCGCGATGCCAGAACGC GAAG GCTTCCTGGTAATGCAG GCACCAATTGGTGTG Pden_4644 133291 - 133749 + | AsnC family transcriptional regulator Pden_4645 134641 - 133967 - | TetR family transcriptional regulator Pden_4646 134870 - 135652 + | cyclase family protein TERM 58 135673 - 135691 + F 72 -3 -4.60487 | opp_overlap 135654, overlap 135658 135657 135675 135676 GCCGCCGCGCCTGCC GCGGCGAA GTT TTCGCGTC TTTTTCAGGATAATC TERM 59 135857 - 135882 + G 73 -7.5 -4.12532 | gap 1, overlap 135875 AGGCCGAATTCGGCT GGA-GCCGCGGC GAA GTCGCGTCGTCC TTTCTCTATACGACG Pden_4647 135709 - 136926 + | major facilitator transporter Pden_4648 136951 - 137886 + | hypothetical protein Pden_4649 138208 - 139215 + | extracellular solute-binding protein TERM 60 140403 - 140443 + G 72 -3.9 -4.61566 | gap 2, overlap 140404 140436 CTATCTTCTGGTGCG CCGTGCCTTCCCGGGCAGC TTCCT GCTGCGCTGG--GGCACGC TTTTGTCCTTTGCCG Pden_4650 139237 - 140928 + | binding-protein-dependent transport systems inner membrane component Pden_4651 140935 - 142038 + | ABC transporter related TERM 61 142313 - 142282 - g 74 -11.4 -3.72576 | overlap 142283 TCCTGGGCGAGGAAA GCGGCTGGCAGGGC GCGG GCCCGGCCAGCTGG ATCATCGACCCGATC TERM 62 142312 - 142283 - g 72 -14.9 -2.83403 | overlap 142282 CCTGGGCGAGGAAAG CGGCTGGCAGGGC GCGG GCCCGGCCAGCTG GATCATCGACCCGAT Pden_4652 142041 - 142892 + | inositol-phosphate phosphatase TERM 63 143433 - 143458 + G 77 -3.2 -4.74215 | overlap 143427 143433 143454 CTTGCAGATGCACTC GG-CGCCGCTGC TGGG GCCG-GGCGACC TTTTGTTCGTGCTGT Pden_4653 142879 - 143721 + | RpiR family transcriptional regulator aphA 143841 - 144527 + | acid phosphatase/phosphotransferase TERM 64 144946 - 144962 + G 71 -10.1 -3.80573 | TTCGACCTGTTCTGG GCTTCGG CGC CCGAGGC TTTCGTGGTGCTGGA Pden_4655 144688 - 145875 + | putative regulatory lipoprotein TERM 65 146239 - 146295 + G 72 -14.3 -3.14132 | gap 2 CCGAGCGCGCCCTGC GCCGCGCGCTGACGGGGTTCGGCAGGC TCAGC GCCGACCTGA-CCCGGC-GCGCGCGGC TTGATGCCCGGACCG Pden_4656 145872 - 147824 + | integral membrane sensor signal transduction histidine kinase Pden_4657 147826 - 149097 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 66 149942 - 149964 + G 71 -11.2 -3.60296 | TGATCGACTTCTTCG GCCTGGCGTC CAA GGCGTCGGGC TTTCCGGTCGAACTG Pden_4658 149263 - 150585 + | extracellular solute-binding protein TERM 67 150634 - 150595 - f 76 -14.2 -3.1706 | gap 1, overlap 150586 AACTGACCGCAGGAA GTCCGAT-CCCGCGCCGCC CCT GGTGGCGCGGGTATCCGTC ACGCCCCTCTGACGC Pden_4659 150662 - 152392 + | binding-protein-dependent transport systems inner membrane component TERM 68 152893 - 152941 + G 74 -11 -3.68222 | gap 2, overlap 152894 GCTGTTGCTGGACGA GCCGCTGTCGAATCTGGACGCCGC GCT GCGG-GTCCAGATGCGGC-GCGAA TTGTTGGCCTTGCAG TERM 69 152894 - 152940 + G 70 -14.5 -2.80612 | gap 2, overlap 152893 CTGTTGCTGGACGAG CCGCTGTCGAATCTGGACGCCGC GCT GCGG-GTCCAGATGCGGC-GCGA ATTGTTGGCCTTGCA Pden_4660 152405 - 153448 + | ABC transporter related Pden_4661 153452 - 154009 + | phosphoglycerate mutase Pden_4662 154010 - 154678 + | pyridoxamine-phosphate oxidase Pden_4663 156053 - 154917 - | hypothetical protein TERM 70 155711 - 155724 + g 72 -5.9 -4.2828 | overlap 155703 CCTGGGCGCGAGCGG GGTCG CCGC CGGCC TTTTCCTCGATCACG TERM 71 155904 - 155870 - G 74 -13.5 -3.29461 | gap 1 CAAGCCGGCCCAGAA CCCTGCCGG-GGGCGG CGCG CAGCCAGCCGGCAGGG TCGTCCATCTCGCAG Pden_4664 156881 - 156075 - | shikimate dehydrogenase Pden_4665 158452 - 156878 - | aldehyde dehydrogenase TERM 72 158132 - 158172 + g 88 -15.4 -3.76224 | opp_overlap 158084 158113, overlap 158133 CAACTGGCCGACGGT GCGGCC-GCGCTCGCCCTCG ATC CGGGGGCGGG-GCAGGCCGG TTTCCTGCATGGCGC TERM 73 158133 - 158171 + g 82 -18.9 -2.8552 | opp_overlap 158084 158113, overlap 158132 AACTGGCCGACGGTG CGGCC-GCGCTCGCCCTCG ATC CGGGGGCGGG-GCAGGCCG GTTTCCTGCATGGCG Pden_4666 159386 - 158454 - | dihydrodipicolinate synthetase TERM 74 158608 - 158619 + g 76 -7.2 -4.36411 | TTGGCGGCGCGCAAC CCGC ATTG GCGG TTTTCATAGTTGATC Pden_4667 160268 - 159459 - | extracellular solute-binding protein TERM 75 160239 - 160251 + g 73 -10.5 -3.93236 | opp_overlap 160232 160233 CAGCACAAGGCCGGC GGCCG TGG CGGCC TTTCTGAAATTCATC Pden_4668 161084 - 160296 - | ABC transporter related Pden_4669 161732 - 161088 - | polar amino acid ABC transporter, inner membrane subunit Pden_4670 162424 - 161744 - | polar amino acid ABC transporter, inner membrane subunit Pden_4671 162586 - 164157 + | Altronate dehydratase Pden_4672 164133 - 165164 + | GntR family transcriptional regulator Pden_4673 166875 - 165193 - | band 7 protein TERM 76 166776 - 166788 + g 73 -10.5 -3.85698 | TGATCAGGCTGATTT CGCGC GTG GCGCG TTTGTAGAGACGGCC Pden_4674 167633 - 166911 - | hypothetical protein Pden_4675 167769 - 168779 + | RpiR family transcriptional regulator Pden_4676 169983 - 168892 - | FMN-dependent alpha-hydroxy acid dehydrogenase TERM 77 169160 - 169120 - G 74 -13.2 -3.28712 | gap 1, overlap 169122 GCCGCCGTCGCACAA CACCGGCACGCGGCCCGCG ATGG CGCGGGCGACG-ACCGGCA GCGCCTCGGCCGTCG TERM 78 169158 - 169122 - G 80 -15.8 -3.21276 | gap 1, overlap 169120 CGCCGTCGCACAACA CCGGCACGCGGCCCGCG ATGG CGCGGGCGACG-ACCGG CAGCGCCTCGGCCGT TERM 79 169928 - 169891 - G 75 -16.1 -2.87132 | CGCCCCGTCGACATA GGCCCGCAGCGGCGCGG GCAT CCGCTCGGCCGCGTGCC GCTCGTAGTCGCACA Pden_4677 170670 - 169987 - | putative hydroxylase TERM 80 170800 - 170777 - R 100 -21 -3.61103 | opp_overlap 170774 TAACGGCAGGGGAAA GGGGCGGGCG ATTG CGCCCGCCCC CGATGCTTCCGATCC Pden_4678 171414 - 170821 - | hypothetical protein Pden_4679 171868 - 172305 + | riboflavin synthase subunit beta TERM 81 172317 - 172342 + F 77 -14.8 -2.90496 | overlap 172314 CTGAACCCGTTGGAA GGCGTCAGTG AACTGA CACTGACGCC TCATTTGGGGGAAAC Pden_4680 172602 - 173063 + | dehydratase Pden_4681 173066 - 173680 + | TetR family transcriptional regulator TERM 82 174142 - 174125 - T 100 -14.1 -5.30616 | opp_overlap 174125 TCAGCCAAAGAAAAA GGCCGCC CGAG GGCGGCC TGATTGGCAAACGGA TERM 83 174125 - 174142 + T 71 -14.1 -2.70932 | opp_overlap 174125 TCAGCCAAAGAAAAA GGCCGCC CGAG GGCGGCC TGATTGGCAAACGGA Pden_4682 175090 - 174512 - | putative PAS/PAC sensor protein Pden_4683 175210 - 175947 + | 3-oxoacid CoA-transferase, A subunit Pden_4684 175947 - 176591 + | 3-oxoacid CoA-transferase, B subunit TERM 84 176625 - 176603 - f 74 -10.5 -3.695 | opp_overlap 176603, overlap 176597 176594 CTGAAAGACGGGAAA CGAGGGGGC CGTCT GCCCTCTCG TTCCCTCCTGGCATG TERM 85 176603 - 176625 + F 72 -12.7 -3.09834 | opp_overlap 176603 176597 176594 CTGAAAGACGGGAAA CGAGGGGGC CGTCT GCCCTCTCG TTCCCTCCTGGCATG TERM 86 177200 - 177181 - g 72 -5.6 -4.45544 | opp_overlap 177185 177187, overlap 177160 177159 177185 TTTCATCAAGGAAAA CGCAGCCC ATGG GGGCTATG GTGGCCTCGCGCGGT Pden_4685 177048 - 178337 + | secretion protein HlyD family protein TERM 87 179003 - 179038 + G 72 -13.2 -3.14132 | gap 1 CTGGTGGCGATGGAT GGCGGCCGGG-TGCTGG CCA CCGGCAGCCCGGCCGAG TTGCTGGAGCGCACC Pden_4686 178334 - 181072 + | ABC transporter related Pden_4687 181069 - 182181 + | ABC-2 type transporter Pden_4688 182818 - 182270 - | YbaK/prolyl-tRNA synthetase associated region Pden_4689 183270 - 182815 - | hypothetical protein Pden_4690 183901 - 183281 - | phosphatidylethanolamine N-methyltransferase Pden_4691 184654 - 183911 - | CDP-diacylglycerol--serine O-phosphatidyltransferase Pden_4692 185334 - 184654 - | phosphatidylserine decarboxylase Pden_4693 186895 - 185444 - | uracil-xanthine permease TERM 88 186787 - 186777 - G 78 -6.8 -4.56597 | overlap 186778 GGCTTTGCGGAAAAA TGCC AGT GGCA ACGCGCGATGGCGCA Pden_4694 187089 - 188438 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pden_4695 188452 - 188814 + | hypothetical protein Pden_4696 192142 - 188951 - | acriflavin resistance protein Pden_4697 193098 - 192139 - | RND family efflux transporter MFP subunit TERM 89 192554 - 192544 - G 76 -2.4 -4.72986 | CAGGCGCAGGAAAAA GCCG CCG CCGC CCACGCTCGCCACCA TERM 90 192817 - 192774 - G 70 -12.4 -3.28712 | gap 1 CGCCGCGCTGCACAA GCGACTGGCCGCGCGCGAAGT CGG ATTCCGC-CTCGGCCAGTTGC GCCCGCAACGCCTCG Pden_4698 193310 - 193110 - | hypothetical protein Pden_4699 194020 - 193418 - | cytochrome B561 Pden_4700 194477 - 194022 - | cytochrome c, class II Pden_4701 194673 - 194993 + | regulatory protein, ArsR TERM 91 195049 - 195028 - T 81 -13.7 -3.53811 | gap 1 CCGACGGCGCGGAAA CGG-CGGGCG TCA CGCCCGGCCG GGAACCGCCGGCCGC Pden_4702 195411 - 195037 - | hypothetical protein Pden_4703 195867 - 195412 - | protein of unknown function DUF395, YeeE/YedE Pden_4704 196294 - 195869 - | protein of unknown function DUF395, YeeE/YedE Pden_4705 196494 - 196291 - | putative transmembrane protein Pden_4706 197445 - 196513 - | beta-lactamase domain-containing protein Pden_4707 197669 - 197983 + | hypothetical protein Pden_4708 198083 - 198478 + | glyoxalase/bleomycin resistance protein/dioxygenase Pden_4709 198528 - 199070 + | hypothetical protein Pden_4710 199082 - 200662 + | glucose-methanol-choline oxidoreductase TERM 92 200673 - 200695 + T 71 -12.7 -2.94126 | gap 1, opp_overlap 200671 200667 TTTGACCAAGGGACG GCCCGCCCGG TCGA CCGG-CGGGC TGTCTGCCTGTCCTT TERM 93 200722 - 200736 + T 77 -12.8 -3.31322 | CCTTGGGCGCCGCAA GCGGGC TTG GCCCGC TTATGCGCGCTTCAG Pden_4711 201006 - 200737 - | cell division topological specificity factor MinE TERM 94 200929 - 200949 + g 70 -12.5 -3.36581 | GCTGGAACGTTCATG CGCCAGCAG GAT CTGCAGGCG TTCCTTGGCGGTTTG Pden_4712 201745 - 201008 - | septum site-determining protein MinD TERM 95 201308 - 201344 + g 70 -12.3 -3.36273 | overlap 201287 CAGCAGCTGCGCCTT GACCGCGCTGCCG TCGCCCTTTTC CGCCAGCGCGGTC TTGCTGTTCAGCAGG Pden_4713 202599 - 201853 - | septum site-determining protein MinC TERM 96 202516 - 202486 - G 71 -2.5 -4.58283 | gap 1, overlap 202488 CAACGCCTCGAAAAA GGTGCGATCCGGCC GGCC GGTCAGAT-GCAGC GCAATGGCCGTGAAG TERM 97 203173 - 203134 - g 75 -10.6 -4.07885 | TATCGCCGCCGAAAA GGCCCGGCAGCTGCGC GAGATCGA GCGCAGGCGGCAGGCC TATCGCGGCACCCGC Pden_4714 202820 - 203488 + | phosphoribosyltransferase Pden_4715 203601 - 204569 + | TRAP dicarboxylate transporter, DctP subunit Pden_4716 204576 - 205070 + | tripartite ATP-independent periplasmic transporter DctQ Pden_4717 205063 - 206352 + | TRAP dicarboxylate transporter, DctM subunit TERM 98 206365 - 206404 + F 74 -13.4 -3.18274 | TAGCGCCCCTGCCAG GCCGGTCCCCCTGCCGCC CGTC GGCGATGCGCGGACCGGC TTGACTTGCCATACG Pden_4718 206504 - 206752 + | hypothetical protein Pden_4719 206786 - 206965 + | periplasmic nitrate reductase NapE Pden_4720 206975 - 207313 + | NapD family protein Pden_4721 207310 - 209805 + | nitrate reductase Pden_4722 209778 - 210263 + | nitrate reductase cytochrome c-type subunit (NapB) Pden_4723 210265 - 210978 + | NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome TERM 99 211532 - 211590 + G 95 -23.8 -2.78679 | overlap 211533 GACATCGCCGCCGCC CGCGCCTCGGTGCTGACGCCGATCGGGG TGG CGCTGATCGGCCTCAGGGCAGGGGCGCG CTTTACCTGGGACAC Pden_4724 211265 - 211678 + | nucleoside diphosphate kinase regulator Pden_4726 213526 - 212549 - | MscS mechanosensitive ion channel Pden_4725 211902 - 212627 + | hypothetical protein TERM 100 213953 - 213937 - TR 71 -7.3 -4.08394 | AGACTCTCGGCAAAA GATCGAA CCG TTCGACC CAAAGCTATTGCGGC Pden_4727 215170 - 213959 - | glucose sorbosone dehydrogenase TERM 101 214725 - 214748 + g 73 -8.1 -4.14392 | gap 1 TCGTCCTGCGACAGT CGGC-CGGTG CCGAC CGCCGTGCCG TTTTCCCCATTGCCG TERM 102 214979 - 214957 - G 74 -13.4 -3.30124 | CGCCATCGGGCAGAA GCGCCATGCC CCA GGGATGGCGC AGATCCTCGGTCAGT Pden_4728 216554 - 215703 - | LysR family transcriptional regulator TERM 103 216892 - 216950 + G 77 -15.1 -3.22653 | gap 2, overlap 216894 GGTGGCGCTGGCATC GGCCGCCGGTC-C-GCAGCCGCTCTGGGC GGT GCTCGGCGCGGCGGCGGTGGCGGGCGGGC TGTTGTCCACCTGGT TERM 104 217520 - 217501 - g 76 -7.1 -4.30576 | gap 1, opp_overlap 217512 CCGGCACCAGGAAAA CGCCG-CG CTGGC CGACGGCG CCATCCTGACCGCGC Pden_4729 216737 - 217570 + | hypothetical protein Pden_4730 217650 - 218903 + | methylamine dehydrogenase heavy chain Pden_4731 218908 - 219468 + | methylamine utilisation MauE Pden_4732 219470 - 220072 + | methylamine dehydrogenase accessory protein MauD Pden_4733 220115 - 220681 + | methylamine dehydrogenase light chain TERM 105 220686 - 220713 + F 100 -21.3 -3.14931 | AGGCGAGCTGACGGC GGCCGGGCGCG CATGCC CGCGCCCGGCC TTCATCCCGCATGGA Pden_4734 220736 - 221131 + | amicyanin Pden_4735 221149 - 222012 + | hypothetical protein Pden_4736 222012 - 223175 + | di-haem cytochrome c peroxidase Pden_4737 223205 - 223879 + | MauM/NapG family ferredoxin-type protein TERM 106 224453 - 224493 + G 75 -9.6 -4.10161 | gap 1, overlap 224454 224478 224479 TGGACCTGTTCGTCT CGCGCCGGGCCTGGTGCAG CCAT CTGTGCCCGGTC-GGCGCC TTTTACGGGCTGGTC Pden_4738 223876 - 224727 + | NapH/MauN family ferredoxin-type protein Pden_4739 225129 - 224785 - | alkylphosphonate utilization operon protein PhnA Pden_4740 225700 - 225218 - | two component LuxR family transcriptional regulator Pden_4741 227240 - 225816 - | integral membrane sensor signal transduction histidine kinase TERM 107 226377 - 226365 - G 75 -9.1 -4.20516 | GGCCGAGGCAAGAAA GCTGC TCA GCAGC CGTTCAAGCCGCTCG Pden_4742 227755 - 227240 - | hypothetical protein TERM 108 227829 - 227793 - H 77 -14.5 -2.8661 | opp_overlap 227793, overlap 227790 227786 227782 CATAGCAACGAAGTA TGGCATGCGCGAACC CGGGTAT AGCCCGCGCATGCCA TTTCGTCACCACCGG TERM 109 227793 - 227829 + H 71 -9.4 -3.72576 | opp_overlap 227790 227786 227782 227793 CATAGCAACGAAGTA TGGCATGCGCGAAC CCGGGTATA GCCCGCGCATGCCA TTTCGTCACCACCGG Pden_4743 228171 - 229892 + | peptidoglycan binding domain-containing protein Pden_4744 231137 - 229896 - | hypothetical protein TERM 110 230024 - 230049 + g 72 -9 -4.08767 | gap 2, opp_overlap 230024 CCCAGCCCTGGAACA CCCCGTCGACCG GCAG CGG-CG-CGGGG TTTTCCAGCCATGCC Pden_4745 232693 - 231134 - | Sel1 domain-containing protein TERM 111 232664 - 232654 - G 79 -2.4 -4.84359 | overlap 232655 CCAGGGCCAGAAAAA GGGC GGT GCCG GCGCCAAGGCGTCGG TERM 112 232828 - 232788 - R 100 -19 -4.07568 | gap 1, opp_overlap 232827 GCTTCCGTGCGAAAA GCGACCGCCGGGCGGGC ACGCGATG GCCCGCCCGGCTG-CGC GCACTATCGGTGCGG Pden_4746 233691 - 232852 - | binding-protein-dependent transport systems inner membrane component TERM 113 233533 - 233518 - G 70 -8.2 -3.90744 | GCCGGCGGCAAAGAA GGCCGC CACC GCGACC AGCGCGATCAGCCCA Pden_4747 234515 - 233688 - | binding-protein-dependent transport systems inner membrane component Pden_4748 235589 - 234525 - | glycine betaine/L-proline ABC transporter, ATPase subunit Pden_4749 236511 - 235660 - | substrate-binding region of ABC-type glycine betaine transport system Pden_4750 237773 - 236793 - | LysR family transcriptional regulator Pden_4751 239113 - 237770 - | FAD dependent oxidoreductase Pden_4752 240620 - 239115 - | aldehyde dehydrogenase TERM 114 240312 - 240327 + g 72 -6 -4.2828 | overlap 240308 GAGGCTTTCCAGCAC CGCCAG TTCG CGGGCG TTTTCCTGCATCAGC Pden_4753 241539 - 240622 - | dihydrodipicolinate synthetase Pden_4754 243025 - 241670 - | hypothetical protein TERM 115 247046 - 247066 + G 75 -8.2 -4.11216 | overlap 247047 ACGACCTGCTGGCGT CCGAGGCG CGGCT CGCCTCGC TTTTCGCCATCGCCA TERM 116 247589 - 247561 - g 74 -13.1 -3.54424 | CCGCAGGGCCGCAAA TGCGCCGTGGTGC GCA GCATCATGGCGCA TCATCAGGGCATGAG TERM 117 251358 - 251316 - g 81 -10.5 -4.25104 | gap 2, opp_overlap 251315 251347, overlap 251318 TGGCGCCGAGGAAAA GACCGGCCGTGCCGGCTGGAC CTG GTATA-CCGGCTCGGCCGG-C TGGCTGCACCGCGTG TERM 118 251357 - 251318 - g 82 -14.2 -3.73042 | gap 1, opp_overlap 251315 251347, overlap 251316 GCGCCGAGGAAAAGA CCGGCCGTGCCGGCTGGAC CTG GTATA-CCGGCTCGGCCGG CTGGCTGCACCGCGT Pden_4755 243208 - 251547 + | putative carbohydrate binding Pden_4756 252096 - 251599 - | AsnC family transcriptional regulator TERM 119 253430 - 253408 - g 73 -12.7 -3.44527 | CACCGAGCAGCAGAA GCGCGCCGA GGCCA TCGGCACGC TGCACCACGGCCAGC Pden_4757 252278 - 253531 + | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Pden_4758 253533 - 254549 + | transketolase, central region Pden_4759 254551 - 255840 + | dehydrogenase catalytic domain-containing protein Pden_4760 255845 - 257233 + | dihydrolipoamide dehydrogenase Pden_4761 257267 - 257992 + | hypothetical protein TERM 120 258086 - 258113 + F 72 -11.3 -3.44146 | overlap 258088 TTTGGGGCATTATTC TGCCCCACGGG AAAAAA TCCGTGGGGTA TTCCTTATGGCACAG Pden_4762 258120 - 259136 + | hypothetical protein Pden_4763 260473 - 259133 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 121 260037 - 260078 + g 83 -12.1 -4.07568 | gap 1, overlap 260031 260038 CCGATCAGCCGGGTC TCGCGCACGGCGCTGTCCTG TTG CTGG-CGGCGCAGGGCGCGG TTTTCCAGCACCAGC Pden_4764 262152 - 260470 - | integral membrane sensor signal transduction histidine kinase TERM 122 260650 - 260630 - G 71 -11.1 -3.64488 | opp_overlap 260637, overlap 260628 AAGGGGGTGAAAAGA TTGGCCGCG ATC CGCGGCGAA AGCCCCGGCCCGTTA TERM 123 262270 - 262283 + H 71 -3.7 -4.56597 | opp_overlap 262263 GATTACAACGCAATG CCGTC ATGC GCCGG TTTTTGGGCGCCACG Pden_4765 262357 - 263724 + | sodium:dicarboxylate symporter TERM 124 263761 - 263782 + T 100 -14.4 -4.8622 | opp_overlap 263761, overlap 263769 TCATGATTGCGACAA GGGCGCCC CGCCGC GGGCGCCC TTTTTCGTTCAGGGC TERM 125 263782 - 263761 - T 80 -14.4 -3.31792 | opp_overlap 263761 263769 TCATGATTGCGACAA GGGCGCCC CGCCGC GGGCGCCC TTTTTCGTTCAGGGC Pden_4766 264801 - 263791 - | periplasmic binding protein/LacI transcriptional regulator TERM 126 265832 - 265847 + G 74 -11.8 -3.72576 | overlap 265831 ATCCCGAGGACGGTG CGCGCG AGGG CGCGCG TTTCGTGCGCGACCA Pden_4767 264898 - 265950 + | xylose isomerase domain-containing protein Pden_4768 265947 - 267041 + | oxidoreductase domain-containing protein Pden_4769 267038 - 268522 + | ABC transporter related TERM 127 268584 - 268599 + G 73 -10.4 -3.85698 | opp_overlap 268595 GGTGATCCTGGGCGC GGCGCT GAAC AGCGCC TTTCTCGCGCCGGCG Pden_4770 268519 - 269487 + | inner-membrane translocator Pden_4771 269506 - 270465 + | ABC ribose transporter, periplasmic solute-binding protein Pden_4772 271328 - 270444 - | RNA polymerase sigma factor SigJ TERM 128 270683 - 270665 - G 77 -11.6 -3.86346 | CCAGCCCGGCATAAA GCCGGGCG ACG CGCTCGGC CCCGGCGATGACGTT Pden_4773 271791 - 271318 - | alkylhydroperoxidase Pden_4774 273037 - 271895 - | phosphonate metabolism protein PhnM Pden_4775 273133 - 273813 + | hypothetical protein Pden_4776 274328 - 273795 - | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN TERM 129 273951 - 273900 - G 74 -12.7 -3.59979 | opp_overlap 273917 GGGCGGCAGGGGAAA GCCCGCCCGCGCCAGCCGCGCCG CCTGAT CCGCGCCGCTTTCGCGGCCGCGC CCCGCCAGCCGGCGG TERM 130 274139 - 274154 + g 70 -8.2 -3.92522 | opp_overlap 274130, overlap 274098 AATGCAGGGCGAATG CGCCGG CCTG CTGGCG TTTCTGGAATTCGGC TERM 131 274240 - 274189 - G 71 -11.4 -3.53811 | opp_overlap 274235, overlap 274223 CTGACGCCCTCGAAA TCCTCGCCGCCTGCCTCGGC CGGGCGGGTAAT GACGCGGCGGGCGGCGCGGA TGTCGGGCCGCGCGG Pden_4777 275008 - 274325 - | phosphonate C-P lyase system protein PhnL phnK 275795 - 275013 - | phosphonates transport ATP-binding protein TERM 132 275347 - 275337 - G 72 -8.2 -4.07885 | overlap 275338 CATGCCGCCCGAAAA GGCC GAG GGCC GGTCGTCGATCCGGT Pden_4779 276664 - 275792 - | phosphonate metabolism PhnJ Pden_4780 277743 - 276661 - | phosphonate metabolism phnH 278309 - 277743 - | carbon-phosphorus lyase complex subunit Pden_4782 278758 - 278306 - | phosphonate metabolism PhnG TERM 133 278766 - 278791 + H 74 -4.7 -4.53303 | overlap 278769 TGGGACATTCCGGGC CTCGACAAGCT TGCG GGTTTGTCTAG TTTTCTATACAACTA TERM 134 279026 - 279077 + G 70 -8.4 -3.85698 | gap 1, overlap 279048 279049 CGTGCGCCATGCGCT GGCCGCGCTGGCCGAGGCGGGGACG GTG CGCTCGCGCCGCGGC-GCCGGGGTC TTTGTCGCGGCGCGG Pden_4783 278877 - 279608 + | phosphonates metabolism transcriptional regulator PhnF Pden_4784 280930 - 279605 - | phosphonate ABC transporter, inner membrane subunit TERM 135 279878 - 279905 + g 88 -12 -4.31412 | gap 1 CTGCACGGCCCCCGC GCCGGTCGAGCGG ATG CC-CTCGACCTGC TTTTCGTCGATGTTT Pden_4785 281776 - 280934 - | phosphonate ABC transporter, inner membrane subunit Pden_4786 282751 - 281840 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein Pden_4787 283605 - 282787 - | phosphonate ABC transporter, ATPase subunit Pden_4788 283918 - 284115 + | hypothetical protein TERM 136 284139 - 284156 + T 95 -12.7 -4.35524 | CGTCCGACGCCTTAA GGCAGCC TTCG GGCTGCC TTTTGCGTTTGCGGG Pden_4789 284724 - 284182 - | NADPH-dependent FMN reductase TERM 137 284816 - 284826 + r 79 -2.4 -5.0133 | opp_overlap 284810, overlap 284791 GGAAATCGACGCCAT GCCC GGC GGGA TTTTTTCACGCCCTG Pden_4790 285551 - 284832 - | 5-formyltetrahydrofolate cyclo-ligase TERM 138 285739 - 285761 + H 100 -12.6 -5.00138 | GATACAGACCCCCAA GCCGCTGGCC CAA GACCGGCGGC TTTTTCATTTCCATG TERM 139 285818 - 285808 - g 75 -4.6 -4.55295 | CTTTGCAGAAAGAAA GAGC CAT GCCC ATCCAGACCGAGAAC Pden_4791 285774 - 286877 + | phospho-2-dehydro-3-deoxyheptonate aldolase Pden_4792 288861 - 286921 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 140 287458 - 287479 + g 78 -5.8 -4.56597 | opp_overlap 287449 TATGAAGCCCTCGCA GATGCCGG CGCGGA CCGGGATC TTTTTCAGCGCCCGC TERM 141 288577 - 288601 + g 70 -12.1 -3.29144 | GCCGCCAAGCGCCGA GCCGTGGATCG CGG CGGTCCAGGGC TTCTGCGCGCCCTCG Pden_4793 289567 - 288866 - | ABC transporter related TERM 142 289140 - 289190 + g 82 -9 -4.41494 | overlap 289144 AGCGCCCGCGCCATG GC-CAGCATCTGCTGCTGGCCGCC CGACA GGCCGCCGGCGGCA-AGGTTGCGC TTTTGCTTCAGGATC Pden_4794 290333 - 289554 - | ABC transporter related TERM 143 289963 - 289931 - G 82 -16.1 -3.29144 | CGACGCGGGCCAGAA GCGCGCGCGCGCCCG CAT CGGCCGCCCGCGCCC GGCGGCGCGAGGACG Pden_4795 291289 - 290330 - | inner-membrane translocator Pden_4796 292161 - 291289 - | inner-membrane translocator Pden_4797 293374 - 292229 - | extracellular ligand-binding receptor Pden_4798 295094 - 293415 - | phenylacetic acid degradation protein paaN TERM 144 295145 - 295125 - H 83 -2.5 -5.10461 | TTTATGCAACAAAAA TTTTCAGGG AGC CTCGGAAAA CGGGGCAAGGGAGTT Pden_4799 295167 - 295955 + | enoyl-CoA hydratase Pden_4800 295952 - 296416 + | phenylacetic acid degradation protein PaaD Pden_4801 296445 - 297755 + | phenylacetate-CoA ligase TERM 145 297807 - 297829 + F 86 -6.9 -4.8667 | opp_overlap 297795, overlap 297810 AAACCCGCTAAGTCG TTAGGGGGC CGTGT GCCCCCTTG TTTTTCTCGCCTCTC TERM 146 297810 - 297826 + F 89 -10.8 -4.53475 | opp_overlap 297795, overlap 297807 CCCGCTAAGTCGTTA GGGGGC CGTGT GCCCCC TTGTTTTTCTCGCCT Pden_4802 297880 - 298479 + | TetR family transcriptional regulator Pden_4803 298650 - 299360 + | adenylyltransferase TERM 147 299431 - 299452 + T 95 -17.3 -3.889 | ACCCGCCTGGCGCTG GGGCGGTGC CGAA GCACCGCCC TTTCATCTCATTCCG Pden_4804 301520 - 299460 - | bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase Pden_4805 302348 - 301596 - | phenylacetic acid catabolic family protein Pden_4806 303447 - 302371 - | phenylacetate-CoA oxygenase/reductase, PaaK subunit Pden_4807 304000 - 303479 - | phenylacetate-CoA oxygenase, PaaJ subunit Pden_4808 304819 - 304007 - | phenylacetate-CoA oxygenase, PaaI subunit Pden_4809 305103 - 304819 - | phenylacetate-CoA oxygenase subunit PaaB Pden_4810 306164 - 305175 - | phenylacetate-CoA oxygenase subunit PaaA Pden_4811 307388 - 306183 - | beta-ketoadipyl CoA thiolase TERM 148 307002 - 306990 - G 75 -10.5 -4.07687 | ATTGGCGCGGGAAAA GGCGG TTT CCGCC TTGGGCATCACGAAG Pden_4812 308388 - 307534 - | PaaX domain-containing protein Pden_4813 310867 - 308495 - | penicillin amidase Pden_4814 311088 - 311471 + | hypothetical protein Pden_4815 311475 - 311948 + | hypothetical protein TERM 149 312087 - 312064 - f 81 -3.1 -5.09225 | ACTTTATGGAAAAAA TACCCTGCA GATGAT TGCGGGATA TGGCCGAAACGACGG TERM 150 312415 - 312448 + G 70 -12.5 -3.2794 | gap 1 TGTGTTGGCCAAGCC GCTGATCTGGGGCGAC GAA GTGGCCTC-GATCAGC TTCATCTGGATGGCG Pden_4816 312233 - 314110 + | TRAP C4-dicarboxylate transport system permease DctM subunit Pden_4817 314140 - 315156 + | TRAP dicarboxylate transporter, DctP subunit Pden_4818 315156 - 315995 + | regulatory proteins, IclR TERM 151 316195 - 316222 + G 72 -14.1 -3.14132 | CGCGCTGGTCGCCAT GGGCACGCCGG AACTGG CGGGCGTGCCC TTCATGCGCACCGAA TERM 152 316408 - 316427 + G 75 -10.6 -4.08216 | CGAGGAGGGCGAGAT CCCCGGCG GGTT CGCCGGCG TTTTCGGCCGCATCA Pden_4819 315992 - 317161 + | acetyl-CoA acetyltransferase Pden_4820 317158 - 318759 + | acyl-CoA synthetase Pden_4821 318756 - 319583 + | hypothetical protein Pden_4822 319580 - 320341 + | short-chain dehydrogenase/reductase SDR Pden_4823 321647 - 320376 - | membrane protein Pden_4824 321817 - 323316 + | phosphoglucomutase/phosphomannomutase alpha/beta/subunit Pden_4825 325164 - 323332 - | ATP-dependent metalloprotease FtsH TERM 153 324125 - 324139 + g 76 -2.7 -4.8048 | TCGACCTCGACATCC GGGGC CAGCC GCACC TTTTTCATATGCACG Pden_4826 325822 - 325307 - | hypothetical protein Pden_4827 326381 - 328453 + | TonB-dependent siderophore receptor Pden_4828 328455 - 329231 + | ABC transporter related TERM 154 329783 - 329841 + G 79 -14.5 -3.27994 | gap 2, opp_overlap 329825, overlap 329784 TGATCGCGGATTATC G-CGTGCGGCTGGACCG-CGTGCGGGCAA GGC TTGCCGGCAAGACGGACCGCCCGCGCGTC TTCGTCTACGATTCC TERM 155 329784 - 329839 + G 85 -18.2 -3.20345 | gap 1, opp_overlap 329825, overlap 329783 GATCGCGGATTATCG CGTGCGGCTGGACCG-CGTGCGGGCAA GGC TTGCCGGCAAGACGGACCGCCCGCGCG TCTTCGTCTACGATT TERM 156 330095 - 330105 + G 72 -8.2 -3.99324 | overlap 330089 ATATCGATGCGGTGC GCGG CGA CCGC TTTCTGGTGCTGGGC Pden_4829 329242 - 330195 + | periplasmic binding protein Pden_4830 330205 - 331230 + | transport system permease protein Pden_4832 332341 - 331703 - | FMN-binding negative transcriptional regulator Pden_4833 332445 - 333902 + | GntR family transcriptional regulator Pden_4834 334761 - 333973 - | AraC family transcriptional regulator TERM 157 334808 - 334787 - H 82 -5.8 -4.77036 | GTCCAGTAGCAAAAA GGCCCG GTTGCGGTGG CGGGCC GGACATACCCTCTCT TERM 158 334834 - 334867 + H 75 -12.3 -3.53012 | opp_overlap 334827, overlap 334836 TCTCTAAAGCCGAGC TTCAGGCCCGGCAAG CTTT CCTGCCGGGCCGGTA TTTCCCAAGCCAGAG TERM 159 334836 - 334865 + H 84 -14.9 -3.34398 | opp_overlap 334827, overlap 334834 TCTAAAGCCGAGCTT CAGGCCCGGCAAG CTTT CCTGCCGGGCCGG TATTTCCCAAGCCAG Pden_4835 334892 - 336103 + | major facilitator transporter Pden_4836 337487 - 336108 - | GntR family transcriptional regulator TERM 160 336953 - 336935 - G 73 -12.4 -3.4072 | GATCGTCGACCAGAA CCGCGTCC CCC GGACGCAG AAGCAACCGGCAGAT Pden_4837 337651 - 338505 + | hypothetical protein Pden_4838 338602 - 338784 + | hypothetical protein Pden_4839 339504 - 338830 - | HAD family hydrolase Pden_4840 340573 - 339581 - | alcohol dehydrogenase Pden_4841 341401 - 340631 - | sorbitol dehydrogenase Pden_4842 342396 - 341398 - | ABC transporter related TERM 161 341971 - 341935 - G 79 -15.1 -3.36273 | gap 1 CTCGTCGAACAGGAA CGCCGCCGGCTCGCGC ACGATG GCGCG-GCCGATGGCG ACGCGCTGGCGCTGG TERM 162 342024 - 342064 + g 70 -14.7 -2.74523 | overlap 342021 GGCGGCCCAGGTAGC CCGTCAGGTTCAGGATGCG CGC CGCGTCCTCGACCTTGCGG TCCTGTTCGGCCTGC Pden_4843 343234 - 342404 - | binding-protein-dependent transport systems inner membrane component TERM 163 342530 - 342520 - G 78 -8.2 -4.36914 | overlap 342521 342522 GTTTCGCGTAGAAAA GCCC CTC GGGC GAGGAATAGCTGGCG Pden_4844 344114 - 343242 - | binding-protein-dependent transport systems inner membrane component TERM 164 343795 - 343782 - G 76 -2.3 -4.77036 | overlap 343783 GGGCATGACGAAAAA GGGTG CGAT CACCA TGACCCGGACGATGC TERM 165 344201 - 344177 - R 95 -15 -4.07885 | GACCGCTGTCGAAAA GGGGCGGAGA TTGCT TCCCCGCCCC CCTCCGGGGAGGAGC Pden_4845 345523 - 344219 - | extracellular solute-binding protein Pden_4846 346655 - 345633 - | periplasmic binding protein/LacI transcriptional regulator TERM 166 346009 - 345985 - G 71 -10.7 -3.53811 | CCCAGTTCCTCGAAA TCCCAGCCG GCCGATT CGGCCGGGA TCACATGCGGCTGGA TERM 167 346814 - 346794 - R 89 -18.3 -3.13164 | GCGGGAACGACGCAA GGGCCGGGA GGA TCCCGGCCC TTCCAAAAGCCGGCA Pden_4847 348114 - 346837 - | tagatose-6-phosphate kinase Pden_4848 349061 - 348120 - | ribokinase-like domain-containing protein TERM 168 348299 - 348273 - G 77 -15.1 -3.16191 | CCACAGGCTGAGGAA GGCGCCGCCGA AGGTG TCGCCGGCGCC GGTCGGGTCGACCTC Pden_4849 350043 - 349066 - | inner-membrane translocator Pden_4850 351551 - 350040 - | ABC transporter related TERM 169 350701 - 350682 - G 71 -2.7 -4.60487 | overlap 350683 350691 GATCAGGCCGAAAAA GCCCAGA ATCTCG CCGGGGC GAACCTCGAAGCCGA TERM 170 351482 - 351504 + g 72 -5.4 -4.38927 | GCCGCATGGATTTCA GGGCCTCGAC CGG GCCGAAGCTC TTTCTTATATCGCGC TERM 171 351602 - 351576 - R 81 -16.6 -2.78384 | opp_overlap 351587, overlap 351586 TCCCCCGTGACCACA CCGCAAGGCATC CCC GACGCCCTGCGG CGCCGCGGTTCATTC Pden_4851 352499 - 351612 - | periplasmic binding protein/LacI transcriptional regulator TERM 172 352829 - 352853 + r 95 -18.6 -3.93695 | AGGTCTCGCGCGGCC GCCGCCTGCC ATGGC GGCAGGCGGC TTTCTGCCTGATCGG Pden_4852 355263 - 352963 - | peptidase C14, caspase catalytic subunit p20 Pden_4853 355892 - 355266 - | hypothetical protein TERM 173 355724 - 355694 - G 73 -8 -4.15044 | overlap 355695 CTGCCCGGCAAGAAA CGCCGTGCCGGCCG ATC CGGCCTGCCAGCCG CACCGCAAGACCATC Pden_4854 357653 - 355962 - | hypothetical protein Pden_4855 358877 - 357807 - | malate/L-lactate dehydrogenase TERM 174 357992 - 357957 - G 72 -8.3 -4.09117 | gap 2, overlap 357958 CGCATCCAGAAAGAA CCGCTCGGC-GA-CGGC GGGT GCCGATCCGCCCAGCGA AGCGGGGTCCAGCGC TERM 175 358518 - 358465 - G 71 -2.9 -4.59109 | gap 1, opp_overlap 358482, overlap 358468 358469 CAGAGGGCCGAAAAA TGATGCGTC-CGGGCAATCGCCATCG CAG CGATGCCGTTTTCGCGCGCCGCCGCA ATCAGATGCGGGCGC TERM 176 358482 - 358500 + g 72 -8.8 -4.07568 | opp_overlap 358469 358468 358465 ATGCGTCCGGGCAAT CGCCATCG CAG CGATGCCG TTTTCGCGCGCCGCC TERM 177 358930 - 358913 - R 79 -10.5 -4.11216 | opp_overlap 358912 358911, overlap 358914 GGTTCAGGCGGAAAA GGCGCCG CTCA CAGCGCC GCGCCGATTTCGCGC Pden_4856 359907 - 358921 - | TRAP dicarboxylate transporter- DctP subunit Pden_4857 361199 - 359934 - | TRAP dicarboxylate transporter, DctM subunit Pden_4858 361816 - 361199 - | tripartite ATP-independent periplasmic transporter DctQ Pden_4859 362996 - 361992 - | proline racemase Pden_4860 364224 - 363004 - | D-amino-acid dehydrogenase Pden_4861 364946 - 364221 - | ABC transporter related Pden_4862 365592 - 364939 - | polar amino acid ABC transporter, inner membrane subunit Pden_4863 366295 - 365603 - | polar amino acid ABC transporter, inner membrane subunit TERM 178 366328 - 366292 - G 86 -19.3 -3.14931 | overlap 366295 CGCAGCTGCCAGGAA GCATCGGGGCGGCGCGA CGA CCGCGCCGCCCCGGCGA TATCAGCGATGGACG TERM 179 366325 - 366295 - R 100 -21.8 -2.78018 | overlap 366292 AGCTGCCAGGAAGCA TCGGGGCGGCGCGA CGA CCGCGCCGCCCCGG CGATATCAGCGATGG Pden_4864 367137 - 366331 - | extracellular solute-binding protein TERM 180 367264 - 367250 - R 86 -3.4 -5.10968 | opp_overlap 367254 367255 367259, overlap 367251 367259 ACTAATATACAAAAA GTGGAC GAA GCCCGC CGGACAGCGGGCTTC Pden_4865 368802 - 367288 - | aldehyde dehydrogenase TERM 181 368360 - 368320 - G 75 -10.4 -4.07568 | gap 1, overlap 368347 368349 GCCCGCCGTGGAAAA GGCCAGCGG-GAAGTTCGA GGCA CCGAACACCGCCACCGGCC CGATGGGCCGCTGCA TERM 182 368855 - 368870 + H 86 -3.3 -5.14985 | overlap 368827 GGTCCCGAATTGGGC CTCAA CCGCCT TTGAG TTTTTGTATATTTCA TERM 183 369167 - 369196 + G 72 -8.5 -4.07568 | CCCGGCAGCGACGGG GCCGTCGTGCG GGTCAATG CGCAGGGCGGC TTTTCCAACCCCGCC Pden_4866 368936 - 369967 + | malate/L-lactate dehydrogenase TERM 184 370004 - 369981 - T 100 -18.2 -4.55798 | GAGGCGAAAGGAAAA GGCCCTTCCG ACAC CGGAAGGGCC CTGGACCGCGATCGT Pden_4867 370981 - 370019 - | dihydrodipicolinate synthase Pden_4868 371782 - 371084 - | GntR family transcriptional regulator Pden_4870 373365 - 372730 - | XRE family transcriptional regulator Pden_4869 372107 - 372817 + | ABC-type branched-chain amino acid transport systems periplasmic component-like Pden_4871 374331 - 373525 - | pyrroline-5-carboxylate reductase TERM 185 373963 - 374020 + g 72 -13.4 -3.13403 | gap 2, overlap 373995 GATGCCGCGACCGAC CAGCGCAGGCGTATTGGGCATCGCCCGG ATGA TCGGGCGGTCGCCAA-GCGCC-GCGCCG TATTGCTGCAGCGAG Pden_4872 374536 - 375981 + | FAD linked oxidase domain-containing protein Pden_4873 376018 - 377100 + | putative spermidine/putrescine transport system substrate-binding protein Pden_4874 377124 - 378206 + | spermidine/putrescine ABC transporter ATPase subunit TERM 186 379100 - 379088 - g 71 -10.5 -3.72576 | TCCTCGGCCAGGAAA GGCCG GCC CGGCC GCAAGGGGATCTTCT Pden_4875 378206 - 379969 + | binding-protein-dependent transport systems inner membrane component Pden_4876 379987 - 380877 + | dihydrodipicolinate synthetase Pden_4877 380890 - 382029 + | L-lactate dehydrogenase (cytochrome) Pden_4878 383257 - 382304 - | pyruvate carboxyltransferase Pden_4879 384446 - 383259 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 187 383324 - 383340 + g 70 -12.3 -3.28924 | GCGTCAGGCCGAGAC TGCCGAG AAT CTCGGCA TTGTGCCCGCCGATG TERM 188 385421 - 385373 - g 74 -14.6 -3.06815 | gap 1 ATCTTTGCGAACAGA CGGATC-GGCCGCCGACCATCGC GCTG GAGACGATCCGCGACCTGATCCG TGACCTGATGGTCCG Pden_4880 384553 - 385485 + | LysR family transcriptional regulator TERM 189 385487 - 385516 + T 93 -17.9 -3.47349 | opp_overlap 385491, overlap 385490 TCGAGGCGGAATGAC GAAAGCCCCGTCC GGGC GGACGGGGCCTTC TTATCGGTTTCGCCG TERM 190 385490 - 385513 + T 88 -13.8 -3.86995 | opp_overlap 385491, overlap 385487 AGGCGGAATGACGAA AGCCCCGTCC GGGC GGACGGGGCC TTCTTATCGGTTTCG TERM 191 385512 - 385491 - T 95 -17.3 -3.84246 | opp_overlap 385490 385487 GGCGGAATGACGAAA GCCCCGTCC GGGC GGACGGGGC CTTCTTATCGGTTTC Pden_4881 386534 - 385533 - | substrate-binding region of ABC-type glycine betaine transport system Pden_4882 387327 - 386548 - | binding-protein-dependent transport systems inner membrane component TERM 192 387250 - 387214 - G 81 -3.5 -4.82901 | overlap 387217 387218 GGGCGTCGAGAAAAA GAACTGGATCCGGGCCG GAT CGCCCAGGATCGACGTC TGGGTGATCACCCAC TERM 193 387247 - 387217 - G 70 -3.8 -4.52873 | overlap 387214 387218 CGTCGAGAAAAAGAA CTGGATCCGGGCCG GAT CGCCCAGGATCGAC GTCTGGGTGATCACC Pden_4883 388133 - 387324 - | ABC transporter related TERM 194 387779 - 387820 + g 73 -12.9 -3.53444 | gap 1 CCTTTTCCAGCCAGT TCTC-GGCCCGCTCCAGCGC TTC GCGCCGCGGCGTGCCCGAGA TTTCCAGCGCGATGG Pden_4884 388714 - 388334 - | hypothetical protein TERM 195 388562 - 388537 - G 79 -5.3 -4.72007 | gap 1, overlap 388538 CTGGACGAAAAGAAA TGCCTCGCCAGA GTG TC-GGCGCGGCG GGGTAGCCCTGCGAC Pden_4885 388791 - 389441 + | binding-protein-dependent transport systems inner membrane component Pden_4886 389467 - 390615 + | glycine betaine/L-proline ABC transporter, ATPase subunit Pden_4887 390612 - 391334 + | binding-protein-dependent transport systems inner membrane component Pden_4888 391373 - 392257 + | substrate-binding region of ABC-type glycine betaine transport system TERM 196 393148 - 393126 - g 70 -12 -3.25823 | CGTGCGCGACAGCAA TCTGGCGCTG GTC CAGCGCGAGA CGGCGCGGCTGATCG Pden_4889 392278 - 393198 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 197 393875 - 393923 + G 71 -11.5 -3.58522 | opp_overlap 393900, overlap 393876 GCGAGGTCGCGCTGG ACGGGGTCCGCGTCCCCGAGGAG AAC CTGCTGGGGCAGGCGGACGCCGG TTTCCGCATCATGCT TERM 198 393876 - 393922 + G 70 -15 -2.74792 | opp_overlap 393900, overlap 393875 CGAGGTCGCGCTGGA CGGGGTCCGCGTCCCCGAGGAG AAC CTGCTGGGGCAGGCGGACGCCG GTTTCCGCATCATGC Pden_4890 393211 - 394401 + | acyl-CoA dehydrogenase domain-containing protein TERM 199 395930 - 395904 - g 71 -10.8 -3.5393 | overlap 395905 ACGAGTTTCTGGAAA GCCTGCCGCTGA ACC CCAGCGGCAAGG TGCTCCGGCGCGAAC Pden_4891 394418 - 395980 + | AMP-dependent synthetase and ligase Pden_4892 395991 - 397316 + | MmgE/PrpD family protein TERM 200 397347 - 397389 + T 74 -14.6 -2.53759 | overlap 397359 GGCGGCTCAGGCGAT GCGGCGCGACCTGGCCCGGG CAG CCCGCGCCTGTTCGCGCATC TCGCTTGGGCGTATT Pden_4893 398360 - 397338 - | AraC family transcriptional regulator Pden_4894 399606 - 398413 - | FAD dependent oxidoreductase TERM 201 398613 - 398654 + g 70 -12.9 -3.25896 | gap 1, overlap 398611 CGACGGTCAGGTTCT CCCACGGT-GCCGGGCGGTC CAT GACCGGGCGGCCATCGGGGG TGTTCTCGATGATGC Pden_4895 401176 - 399593 - | BFD/(2Fe-2S)-binding domain-containing protein TERM 202 401292 - 401270 - R 74 -5.4 -4.50159 | overlap 401271 CCGAAGGGAAAGAAA TCCGACCGCG ATC CGGGGTCAGG CCAGCTTGATCTCGA Pden_4896 402316 - 401288 - | oxidoreductase FAD/NAD(P)-binding subunit TERM 203 401995 - 402050 + g 78 -8.2 -4.25104 | gap 2, overlap 401996 CGTTGTCGCGCAGCC CCAGCGTGAAGGC-GCCGCG-CGGGG GGCGGG CCTCGATGCCGCTGCCTTCGCGCAGA TTTTCATGCAGCCAG Pden_4897 403554 - 402322 - | Rieske (2Fe-2S) domain-containing protein Pden_4898 403708 - 403959 + | hypothetical protein Pden_4899 404570 - 403962 - | uncharacterized peroxidase-related enzyme TERM 204 404618 - 404597 - R 70 -13.7 -2.61322 | gap 1, overlap 404596 404594 AGACTCTGGAAAGAG CGCGCAGGCC GAT GGCC-GCGCG GATCTGGAAAGAAAG Pden_4900 405149 - 404580 - | hypothetical protein TERM 205 405020 - 405064 + g 76 -14.3 -3.40597 | overlap 405018 CCGGAAAATCGCCCT CATCCGCCGGGGAAAGCAACA GCG TGAAGCTTTCTTCGGCCGATG TCTTTGCCTGCGCGC Pden_4901 406185 - 405160 - | luciferase family protein TERM 206 405239 - 405228 - G 78 -5.8 -4.56597 | CGCGGGTGGCAAAAA GCTC GATC GAGC GCAGGATCAGCGGAT TERM 207 405443 - 405425 - G 75 -10.2 -4.07568 | overlap 405408 405426 CCGCTGCCGGCAAAA TGCGCGGC CAC GCGGCGCA GGCCGATCTCGGCCA TERM 208 406017 - 406005 - G 72 -4.7 -4.41494 | opp_overlap 406012, overlap 406008 CATGGGCAAGGAAAA CCAGC GGC GCGGG AAGGCCGCCTTCGTC Pden_4902 406913 - 406182 - | ABC transporter related Pden_4903 407698 - 406910 - | binding-protein-dependent transport systems inner membrane component Pden_4904 408619 - 407735 - | formyltetrahydrofolate deformylase Pden_4905 409599 - 408691 - | methenyltetrahydrofolate cyclohydrolase Pden_4906 410168 - 409602 - | sarcosine oxidase, gamma subunit Pden_4907 413091 - 410161 - | sarcosine oxidase alpha subunit family protein TERM 209 410629 - 410646 + g 73 -9.8 -3.91897 | GGTGCCGTAGGGGGT GGCGCC CAGATC GGCGCC TTTCTCCATCAGCCG Pden_4908 413402 - 413088 - | sarcosine oxidase, delta subunit, heterotetrameric Pden_4909 414630 - 413380 - | sarcosine oxidase beta subunit family protein Pden_4910 414756 - 415922 + | AraC family transcriptional regulator Pden_4911 417121 - 416120 - | extracellular solute-binding protein Pden_4912 418851 - 417208 - | binding-protein-dependent transport systems inner membrane component Pden_4913 419909 - 418848 - | ABC transporter related Pden_4914 420747 - 419938 - | inositol monophosphatase TERM 210 420863 - 420827 - H 71 -12.1 -3.25823 | opp_overlap 420849 420860 420861 CCCGTCGGAGAGCAA GGCCGATCAGGCACCCG ATG CGGATGCCGGCCCGGTC CCGGTCGTGCCGGGG Pden_4915 421058 - 421840 + | DeoR family transcriptional regulator Pden_4916 424311 - 421864 - | FAD dependent oxidoreductase Pden_4917 424551 - 425105 + | XRE family transcriptional regulator Pden_4918 425728 - 425252 - | hypothetical protein Pden_4919 425785 - 426534 + | methionine aminopeptidase TERM 211 426684 - 426717 + F 71 -7.3 -4.09739 | gap 1, opp_overlap 426660 426681, overlap 426684 426712 TTTCCCCAAGCAGGC CCGCGCGGGTCGCGGT CAT GTC-CGACGAGCGCGG TTTTCCCGCCCTTCC TERM 212 426938 - 426904 - g 72 -13.4 -3.18264 | opp_overlap 426916 TTCGTCATGGAGGAA GGGGCGATCATCGCCG GTG CGGCGCTGGCCGCCGC AGGAGAGATCGGCAC Pden_4920 426820 - 427398 + | hypothetical protein Pden_4921 428321 - 427353 - | alpha/beta hydrolase fold Pden_4922 429511 - 428408 - | hypothetical protein Pden_4923 430586 - 429786 - | regulatory proteins, IclR TERM 213 430150 - 430166 + g 72 -4.3 -4.56775 | TGGACCTTTCCCGTC CCCGTCG TCG CCATGGG TTTTTGCAGGCCGAT TERM 214 430766 - 430752 - H 77 -12.8 -3.39895 | GTTGCCAGCAATGAA CCCGGC GAG GCCGGG GCCGGATAAGTCATG Pden_4924 430779 - 431534 + | polar amino acid ABC transporter, inner membrane subunit Pden_4925 431545 - 432189 + | polar amino acid ABC transporter, inner membrane subunit Pden_4926 432173 - 432907 + | ABC transporter related Pden_4927 432970 - 433770 + | extracellular solute-binding protein TERM 215 434949 - 434922 - g 72 -4 -4.58663 | gap 1, overlap 434923 434924 ACCATCCTGGAAAAA TCCCTGGGCGCGG TGG CCAAGGCC-GGGA CCACGAACCTGACCG Pden_4928 433821 - 435347 + | galactarate dehydratase TERM 216 436003 - 436019 + G 78 -13.7 -3.63515 | CGTTCGCCGCGCCGG CCGGCTG GTC CAGCCGG TTGTTCGAGGTGCGC Pden_4929 435375 - 436289 + | 2-keto-3-deoxy-galactonokinase Pden_4930 436286 - 436948 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Pden_4931 437007 - 438020 + | alcohol dehydrogenase Pden_4932 438017 - 438784 + | short-chain dehydrogenase/reductase SDR Pden_4933 439418 - 438858 - | hypothetical protein Pden_4934 440803 - 439421 - | BFD/(2Fe-2S)-binding domain-containing protein TERM 217 440608 - 440567 - G 82 -16.6 -3.28712 | gap 1 CGCCTCGGTCGAGAA GGCGAGCGTGGCGCCGCTG GCCCG CAGCCGCGCCAC-CTCGGC CGCACCGGCCCGATA Pden_4935 441114 - 440800 - | hypothetical protein Pden_4936 442210 - 441095 - | FAD dependent oxidoreductase Pden_4937 442920 - 442207 - | hypothetical protein Pden_4938 443510 - 442917 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Pden_4939 444843 - 443512 - | UbiD family decarboxylase Pden_4940 445641 - 444877 - | histidine utilization repressor TERM 218 447320 - 447307 - g 90 -9.5 -4.77165 | GCGGCTACAAGAAAA GCGGC ATCG GCCGC GAGAACGGCATCGAG Pden_4941 445920 - 447416 + | betaine-aldehyde dehydrogenase TERM 219 448350 - 448332 - g 81 -7.4 -4.62168 | ATCCAAAGCAGAAAA TCGTCCAT GTC ATGGCCGA CCACGGCGATCTGAA TERM 220 448888 - 448873 - g 76 -7.5 -4.3129 | CATCCATGAGGAAAA CCGCC TCGACG GGCGG ACCAACGGCACCGAC Pden_4942 447413 - 449116 + | acetolactate synthase 2 catalytic subunit TERM 221 449160 - 449127 - f 77 -12.4 -3.62096 | gap 1, overlap 449128 449149 GCTGAGCATCGCAAA CCCGCCGCGCCCGCC GCAGA AGCGGGC-CGGCAGA ACCCCCGGGGGCGAC TERM 222 449159 - 449128 - f 71 -13.7 -2.77043 | gap 1, overlap 449127 449149 CTGAGCATCGCAAAC CCGCCGCGCCCGCC GCAGA AGCGGGC-CGGCAG AACCCCCGGGGGCGA TERM 223 449256 - 449284 + G 78 -16.7 -3.09635 | CTCGCCCTTTCGGCC TCCTGGGCCGGCG CGG CCTCGGCCCAGGA TTGCATGCTGCGCGT Pden_4943 449214 - 450236 + | extracellular solute-binding protein Pden_4944 450315 - 451409 + | ABC transporter related Pden_4945 451413 - 452273 + | binding-protein-dependent transport systems inner membrane component Pden_4946 452270 - 453064 + | binding-protein-dependent transport systems inner membrane component Pden_4947 453396 - 453593 + | hypothetical protein TERM 224 453617 - 453638 + T 100 -11.5 -5.14563 | opp_overlap 453613 453617 CGATCGATGAACGGA CCCCGTGGC GGTG GCTGCGGGG TTTTTTCATGCGCGG Pden_4948 454716 - 453745 - | hypothetical protein Pden_4949 455650 - 454856 - | hypothetical protein TERM 225 455557 - 455572 + g 71 -2.4 -4.59773 | overlap 455535 455533 455559 TGGCATATTCCAGCT CCCGCT TCTG GGCGAG TTTTTCGGGATAGAA Pden_4950 455680 - 455967 + | hypothetical protein Pden_4951 457997 - 455943 - | NADH:flavin oxidoreductase/NADH oxidase Pden_4952 459108 - 458149 - | LysR family transcriptional regulator Pden_4953 460233 - 459163 - | putative ammonia monooxygenase TERM 226 459986 - 459960 - G 81 -10.1 -4.26076 | opp_overlap 459963 TCAGGGCCACGAAAA CCAGCGCCACC GGCCA GATGGCGATGG TCTGGCTCAACGCGG Pden_4954 460383 - 461261 + | putative acetyltransferase protein Pden_4955 462640 - 461312 - | FAD dependent oxidoreductase TERM 227 461437 - 461388 - G 78 -16.4 -3.07816 | gap 2 GCGGGATCGACCGAA GGCGTCACGCCGCGGATCAGCTCG GCGG CGAGCCGCCCCGCGGCGGG--GCC GATGCCGAACCCATG Pden_4956 463975 - 462656 - | FAD dependent oxidoreductase Pden_4957 464212 - 464688 + | AsnC family transcriptional regulator Pden_4958 466368 - 464707 - | ABC transporter related Pden_4959 467210 - 466368 - | binding-protein-dependent transport systems inner membrane component Pden_4960 468163 - 467210 - | binding-protein-dependent transport systems inner membrane component Pden_4961 469832 - 468219 - | extracellular solute-binding protein TERM 228 468697 - 468717 + g 75 -9.6 -4.07687 | GCCACCACCGGGATC GGCTGGCC CAGCA GGCCCGCC TTTTCGAACAGCGAT Pden_4962 470690 - 469890 - | HAD family hydrolase Pden_4963 471739 - 470825 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pden_4964 473115 - 471739 - | hypothetical protein Pden_4965 473966 - 473133 - | GCN5-related N-acetyltransferase TERM 229 474042 - 474074 + r 100 -23.5 -3.09516 | CGGGGAACGGTCGGG GCGTGCGCGCGGC GGATCAG GCCGCGCGCACGC TTGGGTCATCCGACG Pden_4966 474433 - 474080 - | protein of unknown function DUF861, cupin_3 Pden_4967 475719 - 474442 - | FAD dependent oxidoreductase Pden_4968 476426 - 475722 - | haloacid dehalogenase, type II TERM 230 476407 - 476425 + g 79 -7.3 -4.47183 | overlap 476408 CGGGTTCCCTGTCTG CGGCGCC AGCGC GGCGCCA TTTCTTTCGATCCTA Pden_4969 477980 - 476532 - | succinic semialdehyde dehydrogenase TERM 231 477764 - 477780 + g 78 -5.7 -4.56597 | overlap 477755 CCAGCAGCGCCGCGC GCTCGGC ATG GCTGCGC TTTTTCCACGAGGCG Pden_4970 479017 - 477977 - | 3-isopropylmalate dehydrogenase Pden_4971 480492 - 479029 - | aldehyde dehydrogenase Pden_4972 481538 - 480618 - | LysR family transcriptional regulator Pden_4973 483504 - 481546 - | 5-oxoprolinase (ATP-hydrolyzing) Pden_4974 485547 - 483508 - | 5-oxoprolinase (ATP-hydrolyzing) Pden_4975 486100 - 485636 - | GCN5-related N-acetyltransferase TERM 232 485685 - 485699 + g 76 -7 -4.25104 | TCGGGATGCGGCACC GGGCGG AAG CCGGCC TTTTCATAAACCGCA Pden_4976 486259 - 487389 + | acetylornithine deacetylase Pden_4977 487592 - 487843 + | hypothetical protein Pden_4978 487868 - 489118 + | hypothetical protein TERM 233 489126 - 489152 + T 84 -13.7 -3.61398 | gap 1 AGTTCTGACGCTTTT CCCGGCGGTCGC CATC GTG-CCGCCGGG TTATTCCGCAACGCA Pden_4979 491096 - 489237 - | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 234 491148 - 491111 - R 81 -14.1 -3.53012 | gap 1, opp_overlap 491138, overlap 491112 TCGGCTCCTCCCAAA GCCCGGCGCGACCATAGC ACG GGT-TGGCCGCGCCGGGG CAGAAATCTTGTCGC TERM 235 491147 - 491112 - R 84 -17.6 -2.71712 | gap 1, opp_overlap 491138, overlap 491111 CGGCTCCTCCCAAAG CCCGGCGCGACCATAGC ACG GGT-TGGCCGCGCCGGG GCAGAAATCTTGTCG Pden_4980 492248 - 491175 - | alcohol dehydrogenase TERM 236 491674 - 491649 - G 78 -12.5 -3.7732 | gap 1 GTCCGACACGAACAA CCGCGTCGCGCC GAA GGCCCG-CGCGG TCAGAAGCGCAAGGA Pden_4981 492587 - 492258 - | alkylhydroperoxidase Pden_4982 493372 - 492584 - | short-chain dehydrogenase/reductase SDR TERM 237 493416 - 493393 - R 74 -11.6 -3.59979 | overlap 493394 TCCTCCCATTGCAAA GGGCCGCCCC CTTG GGGACGGCCG GGCTCTCAGGCGATG TERM 238 493415 - 493394 - R 75 -15.1 -2.75844 | overlap 493393 CCTCCCATTGCAAAG GGCCGCCCC CTTG GGGACGGCC GGGCTCTCAGGCGAT Pden_4983 494525 - 493422 - | branched-chain alpha-keto acid dehydrogenase subunit E2 Pden_4984 495534 - 494527 - | transketolase, central region Pden_4985 496534 - 495557 - | pyruvate dehydrogenase (acetyl-transferring) TERM 239 496612 - 496578 - R 82 -15.7 -3.13403 | gap 1, overlap 496576 GGTTGCGGATGAACA GCCCGGCCTGCGCGGC ATGG GCCATGCAGGC-GGGC ACGTCGATGGTGCGG Pden_4986 497568 - 496555 - | ATP-NAD/AcoX kinase Pden_4987 497659 - 498849 + | RNA polymerase, sigma 54 subunit, RpoN TERM 240 498970 - 498942 - T 82 -6.6 -4.59853 | gap 1, opp_overlap 498943, overlap 498943 CGAACCTGGGAAAAA TCCGGCGG-CACG GGAT CGCATCCGCCGGT TTCATCGCATCCCGT Pden_4988 500036 - 498993 - | hypothetical protein Pden_4989 500854 - 500225 - | Fis family transcriptional regulator Pden_4990 501400 - 500906 - | ErfK/YbiS/YcfS/YnhG family protein Pden_4991 503199 - 502213 - | alcohol dehydrogenase TERM 241 503065 - 503029 - G 70 -8.7 -3.889 | opp_overlap 503053, overlap 503030 GGGAACCATAGGAAA GC-GGCGGACGACCGGG CTTTT CCCGGTCAGC-GCCAGC GCGTCCTTGTAGTTC Pden_4992 504040 - 503222 - | enoyl-CoA hydratase/isomerase TERM 242 503670 - 503647 - G 90 -13.2 -4.07568 | opp_overlap 503638, overlap 503648 503666 CCGGCTCGCCGAAAA CCGCGCTTTC CACG GAAAGCGCGA GGTCGCATCCCATCA TERM 243 503669 - 503648 - G 74 -14.5 -3.04398 | opp_overlap 503638, overlap 503647 503666 CGGCTCGCCGAAAAC CGCGCTTTC CACG GAAAGCGCG AGGTCGCATCCCATC Pden_4993 505269 - 504070 - | major facilitator transporter TERM 244 504980 - 504958 - G 81 -12.6 -3.86015 | CATGCCGGTGACAAA GCGCAGCGCC ACG GTCGCCGCGC CGTCGAAGCCCGTGA TERM 245 505051 - 505005 - G 85 -11.5 -4.30576 | overlap 505047 CCGTGACCAGCAAAA GCGCATTGGCCGCCGCCCC-GCC TAT GGCCGAGGCGGCGAACAGC-CGC CGGGGATCGAAGCGG Pden_4994 506510 - 505308 - | extracellular ligand-binding receptor Pden_4995 507375 - 506611 - | GntR family transcriptional regulator Pden_4996 509489 - 507372 - | CoA-binding domain-containing protein Pden_4997 510285 - 509578 - | ABC transporter related Pden_4998 511034 - 510282 - | ABC transporter related Pden_4999 512032 - 511031 - | inner-membrane translocator TERM 246 511853 - 511837 - G 75 -5 -4.61566 | overlap 511829 511839 GTCCAAAGGACAAAA GCCCGG TATTG CCGGTC AGCATGTCGAGGCTG Pden_5000 512994 - 512029 - | inner-membrane translocator Pden_5001 513969 - 513391 - | HupE/UreJ protein Pden_5002 514329 - 514015 - | rhodanese domain-containing protein Pden_5003 514846 - 514340 - | cupin 2 domain-containing protein Pden_5004 515698 - 514961 - | ABC transporter related TERM 247 515273 - 515251 - GR 70 -5.5 -4.25104 | gap 1 GTTCGTCCAGCAAAA GCAGGT-CGG GTTC CCGCACCAGC GCCCGCGCCAGGGCG Pden_5005 516540 - 515671 - | binding-protein-dependent transport systems inner membrane component Pden_5006 517513 - 516542 - | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein TERM 248 516830 - 516854 + g 75 -8.5 -4.18018 | ATCCTTGATCGCCTC GATCTTCGCCG GGT CGCCGAGGGTC TTTTCGGTCACGGCA Pden_5007 518857 - 517529 - | NtaA/SnaA/SoxA family monooxygenase Pden_5008 520572 - 519031 - | copper resistance protein CopC TERM 249 519327 - 519273 - G 71 -10.7 -3.55444 | gap 2 CCCGCAGGTCCGAAA CCGT-GACCGAGACCAGCCCGAC-CCG GGG CGGCGACACGCCGATCTCGGCCGACAG CGCGGGCGAGGCGAG TERM 250 520107 - 520090 - G 72 -8.3 -4.03234 | overlap 520101 CTCGTCCGACAGAAA GGCCCGG AACA CCGCGCC GCCGACACCGATCAG Pden_5009 521009 - 520569 - | nuclear export factor GLE1 Pden_5010 521812 - 521021 - | ABC transporter related Pden_5011 522801 - 521806 - | binding-protein-dependent transport systems inner membrane component TERM 251 522578 - 522540 - G 70 -12.3 -3.31144 | TGCCGATGGCCAGAA GCCAGGGCGCTCGCTGG GCGGT CCAGCGACCGACACGGC CCAGCCGGTTGCCGC Pden_5012 523842 - 522811 - | ABC transporter substrate-binding protein Pden_5013 524959 - 523853 - | alkanesulfonate monooxygenase TERM 252 524337 - 524294 - G 76 -8 -4.26019 | gap 1 CAACGACAGCGAAAA CCGGGGTTTGCGGCCATGGCG GGC CGC-AGAGGCGCGAACCGCGG CGATGGTCTGGGCCA Pden_5014 526130 - 524976 - | acyl-CoA dehydrogenase type 2 TERM 253 526174 - 526156 - R 77 -5.2 -4.63218 | opp_overlap 526156 TCCTGCGCAACAAAA CACGACAA CTC TAGTCGCG TTAATGTCGGACCAC Pden_5015 527465 - 526530 - | hypothetical protein TERM 254 527616 - 527588 - g 72 -8.2 -4.09685 | gap 1, opp_overlap 527613 527615 TGTTATCGCCGAAAA GCTGCG-GCTGAT CCGC ATCACCTCGCAGC AGCGCCGTTATCCGG Pden_5016 527529 - 528437 + | Serine O-acetyltransferase Pden_5017 528519 - 529106 + | hypothetical protein TERM 255 529864 - 529900 + G 74 -16.5 -2.78596 | AGATCGGACGCACGC TGGACTATGCCGCCGCC ATC GGCTGCGGCGCGGTCCA TGTCATGGCGGGCTC Pden_5018 529599 - 530375 + | hydroxypyruvate isomerase Pden_5019 531179 - 530421 - | beta-ketoadipate pathway transcription regulator TERM 256 531642 - 531657 + G 72 -6 -4.36914 | overlap 531643 CATCCGCGCCGGCGG CGCCGG CATC CCGGCC TTTTATACGCCCACC Pden_5020 531289 - 532038 + | 3-oxoacid CoA-transferase, A subunit Pden_5021 532035 - 532706 + | 3-oxoacid CoA-transferase, B subunit TERM 257 533305 - 533280 - g 76 -14 -3.40403 | gap 1 GGCCTCGCAGCAGAA GGCCGC-GGCG GCCAT CGCCAGCGGCC GGCTCGCAGCCGAGA TERM 258 533625 - 533648 + G 71 -11.7 -3.58343 | opp_overlap 533621 GCAAAAACTGATGGA TCGGCTGGG CCTGAC CCCGGCCGA TTTCGACGTGATCGA Pden_5022 532708 - 533907 + | beta-ketoadipyl CoA thiolase Pden_5023 534962 - 534012 - | NAD-dependent epimerase/dehydratase TERM 259 534152 - 534192 + g 79 -18.3 -2.64155 | overlap 534148 534147 CCCCCGAACGCGGAT CGGCATGGATGATCGGGGT CGG ACCCCGGTCGGCAATGCCG TCGATTTCGGAAGCA Pden_5024 535096 - 535398 + | hypothetical protein Pden_5025 535604 - 536038 + | glycerol-3-phosphate cytidylyltransferase Pden_5026 536541 - 536137 - | hypothetical protein Pden_5027 536632 - 539202 + | glycosyl transferase, group 1 Pden_5028 540220 - 539210 - | hypothetical protein Pden_5029 541374 - 540232 - | hypothetical protein Pden_5030 542752 - 541478 - | hypothetical protein TERM 260 541644 - 541629 - G 76 -2.5 -4.68994 | gap 1 AGCAGCATCGAAAAA CGG-CG TATCG CGACCG CCAGCGCCATCGGGC TERM 261 542955 - 542923 - H 70 -14.2 -2.52464 | gap 2, opp_overlap 542919 542951 CGGCTCGGCAATGCA GACCGGGCCGTCGGCG ACA CGCCG-C-ACCCGGTC ATGCCGTTATACCCG Pden_5031 543056 - 543865 + | ABC transporter related TERM 262 543968 - 544010 + GF 81 -13.4 -3.61398 | overlap 543961 543968 TATCCTTGGCGCAGC GG-CGGTCGCGGTGCTGGCG CTTTA CGCC-GCGCCGGGGCCGGCC TTCTTGCGCGCGGGG TERM 263 543968 - 544009 + GF 71 -13.6 -2.76696 | gap 1, overlap 543961 543968 TATCCTTGGCGCAGC GGCGGTCGCGGTGCTGGCG CTTTA CGCC-GCGCCGGGGCCGGC CTTCTTGCGCGCGGG TERM 264 544023 - 544052 + GF 75 -9.1 -4.00038 | GCCTTCTTGCGCGCG GGGCTGCGCAGCC TGCG GGTGGTGCTGCCC TTTGTCGTCGTCCTG Pden_5032 543840 - 544457 + | cobalt transport protein Pden_5033 544464 - 545039 + | BioY protein TERM 265 545335 - 545348 + T 84 -6.7 -4.82901 | opp_overlap 545335 CTGGCAAGACGGAAA TTGCC AATT GGCAA TTTTTCTAAAGCGGG Pden_5034 546376 - 545354 - | initiator RepB protein Pden_5035 546983 - 548182 + | cobyrinic acid a,c-diamide synthase TERM 266 548305 - 548280 - g 82 -16.1 -3.33261 | CCTCAAGCGGCAGAA CGCGCTGGCCG ACAG CGGCGAGCGCG AGGAAAAGGTGCTGC TERM 267 549037 - 549027 - g 72 -8.2 -4.07877 | CGAGGGGACAAAGAA CGGC ATG GCCG TCGAGCGGCGTGGCA Pden_5036 548179 - 549144 + | parB-like partition proteins TERM 268 549163 - 549150 - T 75 -6.7 -4.4009 | CGGCAGTTGAGAAAA TTGCC AATT GGCAA GATCAGGAACATACA Pden_5037 549998 - 549321 - | ABC transporter related TERM 269 549831 - 549780 - G 85 -16.7 -3.53761 | gap 3, overlap 549815 GAAGCTGCCGGCAAA GCCCACCGGCCAGGAGATGGTGCCGT CCG ACAGCACC--CGCCCGGCCG-TGGGC GAGACCGTGCCGGCG Pden_5038 551244 - 550003 - | capsule polysaccharide export protein-like TERM 270 550228 - 550243 + g 70 -3.2 -4.4261 | gap 1 GCCCTCGGCGAATTC GC-GGTC CAC GGCCAGC TTTTCGTATTCGGCC TERM 271 551864 - 551907 + H 87 -17.2 -2.79302 | overlap 551866 GGGCCTTGCTGCCTG GCGGCCGGCTGCTGGGCCGG CTGG CCGGCCTTGCTGCCGGGCGG TGTGGTGGGGGTGGT TERM 272 551866 - 551893 + H 72 -13.4 -3.14211 | gap 1, overlap 551864 GCCTTGCTGCCTGGC GGCCGGCT-GCTG GGC CGGCTGGCCGGCC TTGCTGCCGGGCGGT Pden_5039 552149 - 552901 + | ABC-2 type transporter Pden_5040 554020 - 552932 - | glycosyl transferase, group 1 Pden_5041 554121 - 555020 + | hypothetical protein Pden_5042 555288 - 554998 - | hypothetical protein Pden_5043 555356 - 556501 + | UDP-galactopyranose mutase Pden_5044 557500 - 556550 - | aldo/keto reductase Pden_5045 558684 - 557500 - | (S)-2-hydroxy-acid oxidase TERM 273 558010 - 557992 - G 89 -2.2 -5.27335 | overlap 557993 CTGGTCAAAGAAAAA GGCCGCGA TTT CCGAGGCG CCGGCCCCCTTGGGC TERM 274 558647 - 558605 - G 71 -10.5 -3.72576 | opp_overlap 558605 558632 558632 558644, overlap 558617 CCGCCGGCGATGAAA TCGAACAGGAAACCCGGCA GATAG CGCCGCGCCGCCCGTTCGA TCTCGTCGATGTTGA Pden_5046 559206 - 558688 - | MarR family transcriptional regulator TERM 275 558816 - 558826 + g 75 -8.2 -4.1899 | TGCTCTCATCGGTCA GGGC GAT GCCC TTTTCGGTCAGCTCG TERM 276 559160 - 559174 + g 73 -7 -4.1413 | CATTGCCGCATGCCG CGTCCG ATC CGGTCG TTTTCCCAGTATCTT Pden_5047 559396 - 560412 + | extracellular solute-binding protein TERM 277 561375 - 561387 + G 75 -10.5 -4.07568 | GCTGGCGGGGACCGT GGCGC TGC GCGCC TTTTCGGGGCCGCAG Pden_5048 560494 - 561555 + | ABC transporter related TERM 278 561596 - 561606 + G 71 -2.4 -4.56607 | overlap 561585 GATCGCGCCGCTTCT GCTG GTG CTGC TTTTGTCCTTCGTGG Pden_5049 561552 - 562403 + | binding-protein-dependent transport systems inner membrane component Pden_5050 562400 - 563188 + | binding-protein-dependent transport systems inner membrane component Pden_5051 563200 - 564021 + | polysaccharide deacetylase Pden_5052 564018 - 564758 + | short-chain dehydrogenase/reductase SDR TERM 279 565045 - 565059 + G 73 -7 -4.11216 | opp_overlap 565038 GGCCAAAGCGGACGC GAGCGC AGC GCGCCC TTTTGCGACTCGCGC Pden_5053 564766 - 565512 + | short-chain dehydrogenase/reductase SDR TERM 280 566566 - 566593 + G 75 -8.2 -4.12188 | TCGGCGGTGGACCTG GCCGAGGCCTCG GCGG CGCGGACGCGGC TTTTCCAGATGATGC Pden_5054 565525 - 566901 + | amidase Pden_5055 568026 - 566911 - | ABC-2 type transporter TERM 281 567627 - 567589 - G 90 -18 -3.53224 | CAGGTCGCGGCGAAA GGCGCCCTCGGCGAGCCG GGC CAGCGCGGCGATGGCGCC GCTGGTCGCCGAGGG Pden_5056 568931 - 568023 - | ABC transporter related Pden_5057 569869 - 568928 - | secretion protein HlyD family protein TERM 282 569580 - 569593 + g 75 -5.2 -4.59773 | overlap 569578 569577 ATGGCCGCGATCTCG GGCG CCCGCC CGCC TTTTTCCAGGTCGGC Pden_5058 570503 - 569862 - | TetR family transcriptional regulator Pden_5059 571534 - 570617 - | ribokinase-like domain-containing protein Pden_5060 572982 - 571531 - | mannitol dehydrogenase domain-containing protein TERM 283 571832 - 571861 + g 73 -7 -4.1899 | GCTTGCAGCGCTTCG GCTGCGGGGGCG AACCAG CGCTGCGGCAGC TTTTCGGTGCCGTCC Pden_5061 574187 - 572979 - | mannonate dehydratase Pden_5062 575363 - 574206 - | L-lactate dehydrogenase (cytochrome) TERM 284 575165 - 575123 - G 78 -9.6 -4.11216 | GCTGCATTCCCAAAA GGCCCACCGGAGCCAAGGCC AGG GGCATCGAGACCGGCTGGCC CAGCATGGTGGTGGC Pden_5063 576411 - 575368 - | alcohol dehydrogenase Pden_5064 577693 - 576413 - | TRAP dicarboxylate transporter, DctM subunit Pden_5065 578204 - 577698 - | tripartite ATP-independent periplasmic transporter DctQ Pden_5066 579252 - 578272 - | TRAP dicarboxylate transporter, DctP subunit Pden_5067 579957 - 579277 - | GntR family transcriptional regulator TERM 285 580031 - 580013 - R 100 -2.3 -5.68438 | overlap 580015 580016 CTAGTAAATAAAAAA GATGCAC CATGC GCGCAGC GAAGTCCTGATCGCT Pden_5068 581079 - 580126 - | LysR family transcriptional regulator TERM 286 581288 - 581318 + G 73 -16.8 -2.64274 | opp_overlap 581248 581272, overlap 581285 581284 CGCGCGACCGCACCA TCGCGGCGGCCAAC GGC GTGGGCGGCCGCGA TCCCTTTGGCGCCAT TERM 287 581589 - 581610 + G 74 -12.9 -3.60296 | opp_overlap 581579 GCAAAGGCTGCTGAC GGCGCGGCG CGAC CGCGGCGCC TTTCGGCTGGCGCTG TERM 288 582192 - 582220 + G 74 -14.5 -3.04144 | AGGCGGCCTGCCCGC CGTGCGCCGCCTC GTC GAGGCGGTGCGGG TCTTCACCCTGGCGG Pden_5069 581257 - 582414 + | O-succinylhomoserine (thiol)-lyase Pden_5070 583371 - 582418 - | AraC family transcriptional regulator TERM 289 582526 - 582496 - G 72 -6.7 -4.25104 | opp_overlap 582499 582518 CGCGGGCGAGGAAAA GCCGGTGCGCGAG GCGAT CTCGCCCAGCGTC AGCTTGGTTTCCAGC Pden_5071 583458 - 584345 + | hypothetical protein Pden_5072 584405 - 585964 + | extracellular solute-binding protein Pden_5073 585961 - 587415 + | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase Pden_5074 587412 - 588389 + | binding-protein-dependent transport systems inner membrane component Pden_5075 588394 - 589212 + | binding-protein-dependent transport systems inner membrane component Pden_5076 589216 - 590832 + | ABC transporter related TERM 290 591247 - 591273 + G 74 -11.5 -3.70902 | gap 1 TGATCGCGGGCGACA GCGCGGGCGGGC TGCT GGCCGCC-GCGC TTTGCCTGTCGCGGC Pden_5077 590829 - 591707 + | alpha/beta hydrolase domain-containing protein Pden_5078 591783 - 592796 + | periplasmic binding protein/LacI transcriptional regulator Pden_5079 592864 - 593532 + | polar amino acid ABC transporter, inner membrane subunit Pden_5080 593534 - 594190 + | polar amino acid ABC transporter, inner membrane subunit Pden_5081 594227 - 595024 + | extracellular solute-binding protein Pden_5082 595077 - 595811 + | ABC transporter related TERM 291 596342 - 596317 - g 72 -6.8 -4.25104 | overlap 596318 CGCCCGGCATGAAAA GCCGGACACC CCGGAC GGTTTCCGAC CCGACGCGCTGGCCC TERM 292 596433 - 596459 + G 73 -12.2 -3.43492 | TGGTCGATGCCGATG TGCTGGCGGCGC TCG GCTCCGCTGGCA TTCTGGTCAATGTCG Pden_5083 595808 - 596752 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 293 597172 - 597151 - g 93 -15.9 -3.85698 | opp_overlap 597151 TCCTGCTGCCAGAAA GCCGCGAAC GGCT GTTCGCGGC GCTGGAACGGCGGTT Pden_5084 596730 - 597665 + | ribokinase-like domain-containing protein Pden_5085 597662 - 598402 + | hydratase/decarboxylase family protein Pden_5086 599519 - 598404 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 294 599496 - 599449 - G 82 -11.2 -4.21936 | gap 1, opp_overlap 599492 GCCAGAACGGCAAAA CCCGCGGCGGCATAGGTCTGGGC GAT GCCCAAGCCCATGGTGCC-CAGG CCGATGACGGCAATG TERM 295 599602 - 599569 - H 82 -6.9 -4.59773 | opp_overlap 599572, overlap 599600 TGCCACCGGCAAAAA TCATTTCAAGCTTGA AATT TTAAACTTGAAACGA ATCCGATTCGCTGGC Pden_5087 599659 - 601944 + | salicylyl-CoA 5-hydroxylase Pden_5088 601941 - 602678 + | short-chain dehydrogenase/reductase SDR Pden_5089 602675 - 603112 + | MarR family transcriptional regulator Pden_5090 603109 - 603921 + | enoyl-CoA hydratase Pden_5091 603925 - 605061 + | acyl-CoA dehydrogenase domain-containing protein Pden_5092 605058 - 605477 + | thioesterase superfamily protein Pden_5093 605467 - 605865 + | endoribonuclease L-PSP Pden_5094 605932 - 607572 + | AMP-dependent synthetase and ligase Pden_5095 607669 - 608814 + | ABC transporter substrate binding protei TERM 296 609024 - 609051 + G 70 -12.6 -3.35996 | opp_overlap 609008 CGGGGCATTCGCCTG CGCGGCGGTGGC GGCG GCCACCGGCTCG TTCTGGCTGGGGCTG Pden_5096 608878 - 609789 + | inner-membrane translocator TERM 297 610620 - 610645 + G 78 -8.9 -4.32034 | gap 1, overlap 610621 610622 GGGTGTGGGGCGGCT TTGCGGC-CCGG TCG CCGGCGCCGCGC TTTTCATCCTGCTGG Pden_5097 609793 - 610785 + | inner-membrane translocator Pden_5098 610778 - 611542 + | ABC transporter related Pden_5099 611539 - 612228 + | ABC transporter related Pden_5100 612229 - 613047 + | esterase/lipase-like protein Pden_5101 613356 - 613069 - | hypothetical protein Pden_5102 616136 - 613437 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC Pden_5103 618018 - 616216 - | poly-beta-hydroxybutyrate polymerase domain-containing protein Pden_5104 618905 - 618213 - | Surfeit locus 1 family protein Pden_5105 619285 - 618902 - | cytochrome C oxidase subunit IV Pden_5106 619902 - 619285 - | cytochrome c oxidase, subunit III Pden_5107 621912 - 619906 - | cytochrome-c oxidase Pden_5108 623127 - 621925 - | ubiquinol oxidase, subunit II TERM 298 622137 - 622168 + g 76 -14.4 -3.4252 | gap 1, opp_overlap 622108, overlap 622140 AGGGCTCCCATCCCA GCACCGGCG-CGCGG GTG CCGCGGCGCTGGTCC TTGTCATAGGTCAAC TERM 299 622140 - 622165 + g 72 -14.7 -2.86747 | gap 1, opp_overlap 622108, overlap 622137 GCTCCCATCCCAGCA CCGGCG-CGCGG GTG CCGCGGCGCTGG TCCTTGTCATAGGTC TERM 300 623825 - 623843 + G 72 -8.8 -4.10161 | TCTGGCGCTGACGGC GCCGCG CAGCCGC CGCGGC TTTTACGCCATGGTG TERM 301 624537 - 624552 + G 72 -6 -4.3467 | overlap 624492 TTCGGCGCCGGCTTC GCGCCG CTGA CCGCGC TTTTGCTGTCGACCT Pden_5109 623349 - 624674 + | major facilitator transporter TERM 302 624789 - 624825 + F 81 -15.8 -3.03124 | AGGAGTGCCGAATTG GCGCCCGGTGCAGCCC CGCGA GGGTTGTGCCGGTCGC TGTTAAAGGGTCGGG Pden_5110 624911 - 626368 + | signal-transduction protein TERM 303 626401 - 626420 + G 70 -9.2 -3.84648 | overlap 626416 TCGGCGCAGGTGCTG CTGGCGCT GTGC GGCGCCGG TTTCCTGCTGTTCAA Pden_5111 626365 - 626610 + | hypothetical protein Pden_5112 626607 - 629312 + | integral membrane sensor signal transduction histidine kinase Pden_5113 629302 - 629667 + | response regulator receiver protein TERM 304 630314 - 630342 + G 83 -14.6 -3.54459 | opp_overlap 630296 GCGCGAGACGGTGGA CCGCCATATCGC GCGGG GCGATACGGCGG TTTCGGCGCAATTCG Pden_5114 629664 - 631784 + | DNA polymerase III, epsilon subunit Pden_5115 633980 - 631818 - | hypothetical protein TERM 305 633268 - 633294 + g 72 -6.5 -4.25256 | gap 1, opp_overlap 633255, overlap 633269 TGCGTGGCGAGTTTG CCATCGGCGCCG ATGA CGGCGATG-TGG TTGTTTTCCTGAAGC TERM 306 634132 - 634107 - R 100 -17.6 -4.27117 | TCCCGACAAGAGAAA GCCCCGCTCC GGCGAG GGAGCGGGGC AGGCGCCAATGCAGA TERM 307 634275 - 634248 - R 91 -6.9 -5.00884 | overlap 634250 AGTCGGGCGAAAAAA CGCGCCGGG GTCAGCCCTG CCCGGCCCG GCCGGCGGCCAGCAC Pden_5116 635226 - 634258 - | putative agmatinase TERM 308 634337 - 634308 - G 73 -7.7 -4.12456 | AGAGCAGTTCGAAAA GCACCGTCGCGCC GGTC AGCGCGGTGATGC CGCCGATGTCGAAGG Pden_5117 635564 - 636178 + | hypothetical protein TERM 309 636640 - 636668 + G 73 -13.1 -3.51232 | overlap 636638 CGCTGGCTGCACAGC TCGGGCGAGGC GCCGGAG GCCACGCCCGA TTGCTTTGCCGGCCG TERM 310 636796 - 636781 - g 77 -3.2 -4.7497 | CGCATCGAGGAAAAA CCCG GTTGCGTG CGGG CCTGCCTGGAGGATG Pden_5118 636385 - 637719 + | hypothetical protein Pden_5119 637973 - 638530 + | NADPH-dependent FMN reductase Pden_5120 638979 - 638626 - | hypothetical protein Pden_5121 639214 - 638963 - | hypothetical protein TERM 311 639485 - 639475 - g 71 -2.4 -4.59081 | GAAACGGATACAAAA GCTC GAG GCGC TGGGCGTGCTGACCG Pden_5122 639347 - 639820 + | AsnC family transcriptional regulator Pden_5123 640247 - 639969 - | hypothetical protein TERM 312 640222 - 640240 + g 100 -16 -4.35116 | opp_overlap 640215 640217 TGACTGAAGACGGAG CGGCGGGA ACT TCCCGCCG TTTTCATATGCGCTG Pden_5124 640248 - 640676 + | hypothetical protein Pden_5125 640801 - 642153 + | putative monooxygenase protein Pden_5126 642158 - 643000 + | binding-protein-dependent transport systems inner membrane component Pden_5127 643025 - 644002 + | Fis family transcriptional regulator Pden_5128 644002 - 644772 + | ABC transporter related TERM 313 644815 - 644867 + F 70 -13.7 -2.60079 | gap 4, opp_overlap 644843, overlap 644850 CCGCGATGGTGAATC GCC-CGG-CTGTCGCCCGGATGGC-AT GGA ATGGCCATCCGGGCG-CAGATTGCGGC TCGGTTGTGGCATGA Pden_5129 645014 - 645514 + | ECF subfamily RNA polymerase sigma-24 factor Pden_5130 645516 - 646472 + | putative FecR TERM 314 646458 - 646483 + F 100 -8.9 -5.40072 | TGGTGGGTGGTGGTC GCGCCGCGC AGCTGAAG GCCCGGCGC TTTTTTTCGCCGCCG Pden_5131 646603 - 649128 + | TonB-dependent siderophore receptor Pden_5132 649292 - 650629 + | RND family efflux transporter MFP subunit TERM 315 651690 - 651711 + G 75 -9.3 -4.19817 | opp_overlap 651690 GGGCCGCTGGGAACA GGCGACGGT TCGC GCCGGCGCC TTTTCGATCGATACC Pden_5133 650650 - 652572 + | ABC transporter related Pden_5134 652635 - 653789 + | hypothetical protein