TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.618871 %AT, 1566967 nt, 9741 terms. Intergenic: 0.670954 %AT, H2T: 175693 nt, 1439 terms; T2T: 52490 nt, 1186 terms; H2H: 45740 nt, 689 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|116491818|ref|NC_008525.1| Pediococcus pentosaceus ATCC 25745, complete genome (length 1832387) TERM 1 360 - 347 - g 71 -3.1 -5.03314 | overlap 357 GCTACCTCTAAAAAA GAAAC CAAA GCTTC TACTGAAGATACCCA PEPE_0001 50 - 1390 + | chromosomal replication initiator protein DnaA PEPE_0002 1568 - 2707 + | DNA polymerase III, beta subunit TERM 2 2723 - 2751 + F 100 -13.4 -5.47821 | TAAAGTAACGCTATG GAGTTTGAGAAA ATTAA TTTCTCAAACTC TTTTTTTGGATAAAT PEPE_0003 2928 - 3155 + | S4-like RNA binding protein TERM 3 4074 - 4088 + G 76 -7.1 -4.34008 | opp_overlap 4074, overlap 4071 TGATGAAAGAAGAAA CCGGA GAATA TCCGG TTCTTTTACTTGATG TERM 4 4088 - 4074 - g 79 -7.1 -4.60258 | opp_overlap 4071 4074 TGATGAAAGAAGAAA CCGGA GAATA TCCGG TTCTTTTACTTGATG recF 3155 - 4279 + | recombination protein F TERM 5 4578 - 4567 - g 80 -5.8 -5.11836 | opp_overlap 4566 4567 ATATCCAAAAGAAAA CTGG AAAA CCAG CTTTAGAAACAGTCT TERM 6 4896 - 4885 - g 74 -5.8 -4.66953 | TTAATATCTTAAAAA CACG AATT CGTG AATTAGCCTTTTTGA PEPE_0005 4284 - 6230 + | DNA gyrase subunit B PEPE_0006 6279 - 8810 + | DNA gyrase subunit A TERM 7 8825 - 8858 + F 72 -3.4 -5.30155 | gap 2, opp_overlap 8835, overlap 8835 AATTTAATTAAAAAA GCTGATT-G-AAGTGA TTTT TCACTTTTTAATCAGC TTTTTTAATTAATAA TERM 8 8835 - 8846 + F 70 -4.4 -4.75404 | opp_overlap 8835, overlap 8825 AAAAAGCTGATTGAA GTGA TTTT TCAC TTTTTAATCAGCTTT PEPE_0007 9057 - 9341 + | SSU ribosomal protein S6P PEPE_0008 9377 - 9904 + | single-stranded DNA-binding protein PEPE_0009 9928 - 10164 + | SSU ribosomal protein S18P TERM 9 10181 - 10210 + F 100 -15.9 -5.30616 | opp_overlap 10181 CTTTAGCTATATAAA GTACCATTCAGGC CGAG GCTTGAATGGTAC TTTTTGTTTAAATAA TERM 10 10210 - 10181 - f 100 -13.7 -4.0641 | opp_overlap 10181 CTTTAGCTATATAAA GTACCATTCAGGC CGAG GCTTGAATGGTAC TTTTTGTTTAAATAA TERM 11 11364 - 11345 - g 72 -5.6 -4.67011 | opp_overlap 11355, overlap 11332 11349 AATCCGATGGAAAAA CGGACTCG CGTT CGAGCGCG GATGATTGGACAAGC PEPE_0010 10367 - 12367 + | signal protein PEPE_0011 12373 - 12825 + | 50S ribosomal protein L9P TERM 12 13935 - 13915 - g 75 -3.1 -5.1925 | overlap 13916 13917 CGACAACTTAAAAAA CTCGCCAAG GAA CTAGGCGTA CCGGTCATTGCGCTT PEPE_0012 12874 - 14271 + | primary replicative DNA helicase TERM 13 14303 - 14335 + F 100 -9.4 -4.77567 | gap 1, opp_overlap 14305 ATTCATTATTTTCAA GACTGGTTTAAGACT TTTT AGTCT-AAATCAGTC TTTTATTATAAAAAT PEPE_0013 14364 - 15563 + | major facilitator superfamily permease TERM 14 15591 - 15546 - T 100 -20.3 -3.27994 | gap 1, opp_overlap 15558, overlap 15558 GCAATTTTATACGAA TCT-AATAAAAAAGGATAGCCT CTA AGGCTATCCTTTTTTATTTAGA AAATAAATAATACCA TERM 15 15558 - 15578 + T 100 -14.1 -5.63517 | opp_overlap 15546 15558 GAATCTAATAAAAAA GGATAGCCT CTA AGGCTATCC TTTTTTATTTAGAAA TERM 16 15578 - 15558 - T 100 -14.1 -5.5074 | opp_overlap 15558, overlap 15546 GAATCTAATAAAAAA GGATAGCCT CTA AGGCTATCC TTTTTTATTTAGAAA PEPE_0014 15955 - 15587 - | hypothetical protein TERM 17 15722 - 15710 - G 77 -6.3 -4.72272 | opp_overlap 15710 GCTTGCTAGGAAAAA GATGA GCA TCATC TTCATAATAGTTCCT PEPE_0015 16199 - 16930 + | permease TERM 18 17185 - 17208 + F 83 -6 -5.31456 | TATGCACTTTGTATT GCATCAGG CCTGCACA CCTGGTGC TTTTTTATGCCTTAA TERM 19 17296 - 17280 - g 76 -3 -5.3671 | gap 1 AATACAATTAAAAAA CGTAAGC TTTA GCT-ACG ATAACCAAATAAAAC TERM 20 18138 - 18116 - g 74 -8.6 -3.59653 | opp_overlap 18116, overlap 18114 AGTTACTAAAGAATA TTGAAATTCA GGA TGAACTTCAA TTGAATTATCAACCG PEPE_0016 17257 - 18741 + | ABC transporter ATPase TERM 21 18753 - 18800 + F 88 -6.4 -5.45802 | gap 1, opp_overlap 18743, overlap 18752 ATAAGCAAATAATTT TGACACGGTGTCACTTTGTGCTA TTC TAGCATTGT-TGACACGGTGTCA TTTTTATTTTAAGGA PEPE_0017 18825 - 19328 + | transcriptional regulator TERM 22 20229 - 20249 + G 82 -8.3 -4.21194 | opp_overlap 20234, overlap 20232 TTATTGGAACGGCTC TAACAGCTG CTA CAGCTGCTA TTTTACCTGCTGCAG TERM 23 20232 - 20246 + G 74 -10 -2.81922 | opp_overlap 20234, overlap 20229 TTGGAACGGCTCTAA CAGCTG CTA CAGCTG CTATTTTACCTGCTG PEPE_0018 19331 - 20395 + | peptide ABC transporter permease TERM 24 20776 - 20746 - g 74 -10.1 -2.6795 | opp_overlap 20749, overlap 20745 20744 20749 AGTAAAAAAAGAAGG TAATTTATCTAAA GAAAG TTTAGATAAATTA TTGCAACAACTAGGA PEPE_0019 20399 - 21076 + | peptide ABC transporter ATPase TERM 25 21087 - 21113 + F 100 -10.4 -5.40072 | opp_overlap 21087 21090 TATAAGTAATAAAAA TGATGATAGAAA TTT TTTCTATCATTA TTTTTTTAACCCAAA TERM 26 21113 - 21087 - f 93 -8.2 -5.2204 | opp_overlap 21087, overlap 21090 TATAAGTAATAAAAA TGATGATAGAAA TTT TTTCTATCATTA TTTTTTTAACCCAAA TERM 27 21110 - 21090 - f 84 -9.9 -3.41572 | opp_overlap 21087, overlap 21087 AAGTAATAAAAATGA TGATAGAAA TTT TTTCTATCA TTATTTTTTTAACCC TERM 28 21178 - 21201 + F 74 -6 -4.62783 | AACTTGATTTTTAAG CCATGTAACA GGTT TGTTGCTTGG TTTTTAAAATGACTG PEPE_0020 21247 - 21819 + | XRE family transcriptional regulator TERM 29 21826 - 21851 + T 100 -12.7 -4.71482 | opp_overlap 21826 GAAAAATGATAAAAA GGCAAATCAAC TGAC GTTGGTTTGCC TTTTTAAAGTTTGAT TERM 30 21851 - 21826 - T 100 -10.5 -5.1286 | opp_overlap 21826 GAAAAATGATAAAAA GGCAAATCAAC TGAC GTTGGTTTGCC TTTTTAAAGTTTGAT PEPE_0021 23051 - 21867 - | acetyltransferase PEPE_0022 23251 - 23066 - | hypothetical protein PEPE_0023 24493 - 23258 - | cellobiose-specific PTS system IIC component TERM 31 24743 - 24708 - R 100 -7.8 -5.65927 | gap 1 CAGTGAAATAAAAAA GCGCTAA-TTATCAG AGCAGTA CCGATAATTTAGCGC CCCTTATTAATCGAC PEPE_0024 25106 - 24750 - | transcriptional regulator TERM 32 24946 - 24958 + g 70 -2.7 -5.12617 | overlap 24933 TCCAACTCCCGAAGT TGTTG GGT TAACA TTTTTTGACTAATTC TERM 33 25867 - 25841 - g 73 -4.5 -4.88407 | TGATGCAAGGAAAAA TCTTAGACAAC GCTGT GTTAGCTAAGA TTGCCCAAAAGTACA PEPE_0025 25243 - 26082 + | aldo/keto reductase PEPE_0026 26103 - 26897 + | Short-chain alcohol dehydrogenase PEPE_0027 26992 - 27540 + | flavoprotein TERM 34 27602 - 27567 - T 100 -14.2 -5.30616 | gap 1, opp_overlap 27567 TTATGCAAATAAAAA TAGCCTAACCAGACGGA AAT TCCGTG-GGTTAGGCTA TTTTTCATTGTGCTT TERM 35 27567 - 27602 + T 100 -14.2 -4.95876 | gap 1, opp_overlap 27567 TTATGCAAATAAAAA TAGCCTAACCAGACGGA AAT TCCGTG-GGTTAGGCTA TTTTTCATTGTGCTT PEPE_0028 27935 - 27600 - | ArsR family transcriptional regulator PEPE_0029 28001 - 28606 + | permease, cadmium resistance protein PEPE_0030 28732 - 30021 + | hypothetical protein PEPE_0031 30045 - 30512 + | hypothetical protein TERM 36 30527 - 30509 - f 71 -7.6 -3.54181 | opp_overlap 30513, overlap 30505 30518 ATTTGAAAAGATTAA TTAACTTA ATT TAAGTTAA ATGAAACTGCGCTAA TERM 37 30701 - 30746 + F 100 -12.8 -6.04324 | opp_overlap 30714 ACCACCGGGTGGTCA GGCATTTGTAAAGCTCATTA GGTCAA TGAAGAGCTTTACGGATGCC TTTTTTATTTTTTAG PEPE_0032 30774 - 31094 + | membrane transporter PEPE_0033 31114 - 31752 + | hypothetical protein PEPE_0034 33201 - 31840 - | NAD(FAD)-dependent dehydrogenase PEPE_0035 33332 - 34012 + | C-di-GMP-specific phosphodiesterase TERM 38 34022 - 34050 + T 88 -6.1 -5.51165 | opp_overlap 34025, overlap 34025 AAATAAAAGTCAAAA AAACTACTAACCT CAA AAGTTAGTAGTTA TTTTTTTACAATTTT TERM 39 34025 - 34047 + T 87 -7.8 -4.80853 | opp_overlap 34025, overlap 34022 TAAAAGTCAAAAAAA CTACTAACCT CAA AAGTTAGTAG TTATTTTTTTACAAT TERM 40 34047 - 34025 - T 100 -10 -5.61824 | opp_overlap 34022 34025 TAAAAGTCAAAAAAA CTACTAACCT CAA AAGTTAGTAG TTATTTTTTTACAAT PEPE_0036 34506 - 34048 - | BS_ykrK family protein TERM 41 35154 - 35171 + G 74 -7.7 -4.02132 | CAGGAGGCGTGGTAT TCACCGT GGGA GCGGTGA TTTATAGCTTTCCGC PEPE_0037 34634 - 35272 + | hemolysin III-like protein TERM 42 35302 - 35327 + T 100 -13.5 -4.17657 | opp_overlap 35302 AAAACACAACAAAAA GAGATTTCAGT ATCG ACTGAAATCTC TTTTAAAATATACTA TERM 43 35327 - 35302 - T 100 -13.5 -5.35365 | opp_overlap 35302 AAAACACAACAAAAA GAGATTTCAGT ATCG ACTGAAATCTC TTTTAAAATATACTA PEPE_0038 35877 - 35344 - | acetyltransferase PEPE_0039 36064 - 37335 + | Na+/H+-dicarboxylate symporter TERM 44 37363 - 37392 + T 100 -20.9 -4.80396 | opp_overlap 37363 AATACAGCGAAAAAA GGCGACCATGACA TTAA TGTCATGGTCGCC TTTTTGAATATTTTA TERM 45 37392 - 37363 - T 100 -20.9 -5.15381 | opp_overlap 37363 AATACAGCGAAAAAA GGCGACCATGACA TTAA TGTCATGGTCGCC TTTTTGAATATTTTA PEPE_0040 39198 - 37405 - | glycerophosphoryl diester phosphodiesterase TERM 46 37460 - 37478 + g 79 -4.6 -5.25803 | overlap 37461 CCATAACTTGGATGG TGGTTAAG TTG TTTAACCG TTTTTTGTAGAAGTT TERM 47 39149 - 39138 - G 72 -2.2 -5.2204 | TAGAAGCAATAAAAA GCCA AATA TAGC TAAAAATGTGTTTAA PEPE_0041 39556 - 39323 - | hypothetical protein PEPE_0042 40096 - 39569 - | membrane ancor connecting MutS2 with cell-division Z-ring PEPE_0043 40370 - 41059 + | hypothetical protein PEPE_0044 41074 - 41754 + | hypothetical protein TERM 48 42722 - 42696 - g 70 -8.1 -3.31188 | gap 1, opp_overlap 42700 42701, overlap 42699 42701 GATCATAACGATGAA GAAGACGTAGCA AGAA CGCTACG-CTTC TCAACTTGGGATTCA PEPE_0045 41901 - 43502 + | manganese transporter NRAMP PEPE_0046 43502 - 43933 + | universal stress protein UspA-like nucleotide-binding protein TERM 49 43938 - 43976 + T 100 -11.2 -4.29845 | opp_overlap 43943, overlap 43943 TGGTTCGATAATATA AAAAATGGATCAACGC TTTGATT GCGTTGGTCCATTTTA TTTTGAGTTAAATTA TERM 50 43971 - 43943 - T 100 -8.9 -5.5208 | opp_overlap 43943 43938 CGATAATATAAAAAA TGGATCAACGC TTTGATT GCGTTGGTCCA TTTTATTTTGAGTTA TERM 51 43943 - 43971 + T 100 -11.1 -5.13343 | opp_overlap 43943, overlap 43938 CGATAATATAAAAAA TGGATCAACGC TTTGATT GCGTTGGTCCA TTTTATTTTGAGTTA PEPE_0047 44879 - 43989 - | diacylglycerol kinase family lipid kinase PEPE_0048 45768 - 44872 - | fhu operon transcription regulator TERM 52 45966 - 45956 - g 72 -5.4 -4.67011 | AATCGTAGCTAAAAA CCAA CGG TTGG TTCAGCAATTAAATA PEPE_0049 45891 - 46445 + | galactoside O-acetyltransferase PEPE_0050 46445 - 47194 + | Short-chain alcohol dehydrogenase of unknown specificity TERM 53 47715 - 47705 - g 71 -4 -4.90013 | TAATTTAATCAAAAA TAGT GAT ACTA AGCCAATGGTTAACC PEPE_0051 47214 - 48080 + | aldo/keto reductase TERM 54 48147 - 48108 - T 85 -5.1 -5.53288 | opp_overlap 48108 TTTAATCCAAAAAAA TAATCTAAGGTTGGTCC TAAAAG GGATCATTCTTAGATTA TTTTTTATTATGCTG TERM 55 48108 - 48147 + T 100 -10.2 -5.58179 | opp_overlap 48108 TTTAATCCAAAAAAA TAATCTAAGGTTGGTCCT AAAA GGGATCATTCTTAGATTA TTTTTTATTATGCTG PEPE_0052 48898 - 48155 - | ABC transporter permease PEPE_0053 49604 - 48900 - | ABC transporter ATPase PEPE_0054 49974 - 49597 - | GntR family transcriptional regulator TERM 56 50521 - 50511 - g 73 -4 -5.03747 | opp_overlap 50511, overlap 50500 AAAGCTTCGAAAAAA TCAA CCA TTGA TTTTCCAAAGAGTAC PEPE_0055 50136 - 51311 + | Beta-lactamase class A PEPE_0056 51333 - 52217 + | hypothetical protein TERM 57 52227 - 52257 + F 100 -9.8 -5.63517 | opp_overlap 52227 TTTTAAAGTATCAAG GCTTGGTGGAAGTT AAA AACTTTCTCTAAGC TTTTTTATTTAGAGG PEPE_0057 52344 - 53369 + | penicillin V acylase precursor. cysteine peptidase. MEROPS family C59 TERM 58 53416 - 53377 - T 70 -8 -3.16965 | opp_overlap 53382, overlap 53382 AAATTTAATTGAATA TAAAATTGCACCCAGAGT TCTC ATTCTCGGTGCAATTTTT TTGTACAAAAAAGAC TERM 59 53382 - 53411 + T 100 -10.1 -5.60993 | opp_overlap 53377 53382 TAATTGAATATAAAA TTGCACCCAGAGT TCTC ATTCTCGGTGCAA TTTTTTTGTACAAAA TERM 60 53411 - 53382 - T 82 -7.9 -4.7033 | opp_overlap 53382, overlap 53377 TAATTGAATATAAAA TTGCACCCAGAGT TCTC ATTCTCGGTGCAA TTTTTTTGTACAAAA TERM 61 53444 - 53429 - T 95 -9 -5.24129 | opp_overlap 53429 TTTTTGTACAAAAAA GACCTC CAAC GAGGTC TTTAGATTATTTATT TERM 62 53429 - 53444 + T 81 -9 -3.91946 | opp_overlap 53429 TTTTTGTACAAAAAA GACCTC CAAC GAGGTC TTTAGATTATTTATT PEPE_0058 54203 - 53451 - | nicotinamide mononucleotide transporter TERM 63 54297 - 54278 - H 81 -3 -5.75945 | gap 1, overlap 54282 AGGTTGCAAAAAAAA GTAGTACTA AAC TAGTA-TAC GCTCCTTAAATGAGG TERM 64 54502 - 54472 - H 80 -6.5 -4.92239 | gap 1 CTAAAAATCGAAAAA TTTGTACAATAAAA ATAT TTTTAT-GTACAAA TGGAAAAACGTTACA PEPE_0059 54772 - 61776 + | subtilisin-like serine protease TERM 65 61789 - 61771 - T 73 -7.6 -3.65475 | overlap 61783 AAAAAAGATAACGAA GATTAAAT AAC ATTTAATC TAAAATAAAACACTC TERM 66 61837 - 61795 - T 100 -15.2 -4.29176 | opp_overlap 61800, overlap 61800 ACATTTAATCTAAAA TAAAACACTCAACATTAGTT AAA AACTGATGTTGAGTGTTTTT GTGTTAAGCGGCTAA TERM 67 61832 - 61800 - T 100 -15.1 -5.13343 | opp_overlap 61800, overlap 61795 TAATCTAAAATAAAA CACTCAACATTAGTT AAA AACTGATGTTGAGTG TTTTTGTGTTAAGCG TERM 68 61800 - 61832 + T 100 -17.3 -5.0916 | opp_overlap 61800 61795 TAATCTAAAATAAAA CACTCAACATTAGTT AAA AACTGATGTTGAGTG TTTTTGTGTTAAGCG PEPE_0060 62231 - 61866 - | MerR family transcriptional regulator PEPE_0061 62378 - 63400 + | Aryl-alcohol dehydrogenase related enzyme TERM 69 63429 - 63457 + F 85 -6.7 -5.12707 | opp_overlap 63423 AATCAAAAATAAAAA CGGCTGTCAGAAG TAA TTTCTGAGGGTCG TTTTTTCAGATTTAA TERM 70 64569 - 64548 - g 75 -3.1 -5.19251 | TAATATTAATAAAAA GAAATTAAA TGAT TTGAATTTC GCTTTAGTCGACGAA TERM 71 65254 - 65290 + G 70 -8.8 -3.07344 | opp_overlap 65251 65247, overlap 65251 65247 65265 CAGATCAAGAGACCG GTCTTGTTAAAGACGG GTTCG CTGTCTTTATCCAGAC TCTATTCGCGAGTAC TERM 72 65747 - 65731 - g 70 -7.9 -3.67843 | overlap 65722 GAAAAGGCTCAACAA GCGGCTG ATT CAGCAGC TGAAGAAAGTCGAAA TERM 73 66123 - 66085 - g 74 -7.7 -3.95772 | gap 1, overlap 66090 66093 AATAACAAATTTAAA CAAAACTATTTAGAACGA TTGG CCGTTCTAAA-AGCCTTG GATGTAGCCTGGATT TERM 74 66118 - 66090 - g 79 -6.2 -4.96468 | gap 1, overlap 66085 66093 CAAATTTAAACAAAA CTATTTAGAACGA TTGG CCGTTCTAAA-AG CCTTGGATGTAGCCT TERM 75 66116 - 66093 - g 72 -9 -3.33286 | overlap 66090 66085 ATTTAAACAAAACTA TTTAGAACGA TTGG CCGTTCTAAA AGCCTTGGATGTAGC PEPE_0062 63976 - 66345 + | preprotein translocase subunit SecA TERM 76 67029 - 67011 - g 70 -6 -4.26202 | overlap 67007 ATATTTATCAATAAA GCTGAATT ACG AATTCCGC TTCAGCGACCTTTTG TERM 77 67527 - 67507 - g 76 -10.5 -2.73364 | opp_overlap 67506 67513 TCCTCATTTTAATTA CCATCATTG ATA CAACGATGG ATCAATTTAAGACGA PEPE_0063 66342 - 67574 + | protein translocase subunit secY/sec61 alpha TERM 78 67706 - 67694 - g 82 -4.7 -5.40072 | opp_overlap 67695, overlap 67695 TTGGTGGTAAAAAAA GCGTG AAG CTCGC GGTGTTAAATTTTTT TERM 79 68858 - 68848 - g 70 -8.2 -3.24823 | opp_overlap 68845 68845 68848, overlap 68835 68846 68845 AATCCGCAAAAATTA GCGG ATT CCGC TCGATTTAAAAAGAT TERM 80 69182 - 69160 - g 79 -7.8 -4.20918 | opp_overlap 69162 GGTAATTGGAATAAA TCCTTAGTTG CGA CAACTAAGTA TATGGAACAACTAAC TERM 81 69162 - 69180 + G 76 -10.4 -2.87344 | opp_overlap 69160 TAATTGGAATAAATC CTTAGTTG CGA CAACTAAG TATATGGAACAACTA PEPE_0064 67597 - 69249 + | hypothetical protein TERM 82 70065 - 70053 - g 86 -7.7 -4.85782 | TCGGCGAAAAAGAAA TGGTC GAT GACCA AGCAATGAATGAGCA PEPE_0065 69239 - 70822 + | hypothetical protein PEPE_0066 70815 - 71633 + | hypothetical protein PEPE_0067 71661 - 73109 + | glycosyltransferase PEPE_0068 73099 - 73947 + | hypothetical protein TERM 83 73981 - 73959 - f 77 -9.2 -3.35695 | opp_overlap 73960 TTGAGATAAATTGAA GGCCAAATCA TCA TGATTTGGCT TTTTTACTAGAATAT TERM 84 73960 - 73980 + F 100 -12.7 -5.15634 | opp_overlap 73959 TGAGATAAATTGAAG GCCAAATCA TCA TGATTTGGC TTTTTTACTAGAATA PEPE_0069 74013 - 74744 + | hypothetical protein PEPE_0070 74757 - 75554 + | hypothetical protein TERM 85 75633 - 75612 - f 85 -10.3 -3.55524 | overlap 75608 AATGAGTGAAATGAA TTTTTAGGG TACA CCCTAAAAA ACAAGCTAAACCATC TERM 86 75750 - 75776 + F 100 -15.4 -4.14397 | opp_overlap 75755, overlap 75755 AATAAATTTCTCTAA TAAAAGCCTGAT ATT ATCAGGCTTTTA TTTAGTTTATAAAGT TERM 87 75755 - 75771 + F 100 -10.9 -5.06223 | opp_overlap 75755, overlap 75750 ATTTCTCTAATAAAA GCCTGAT ATT ATCAGGC TTTTATTTAGTTTAT TERM 88 75771 - 75755 - f 100 -10.9 -4.63486 | opp_overlap 75755 75750 ATTTCTCTAATAAAA GCCTGAT ATT ATCAGGC TTTTATTTAGTTTAT TERM 89 75880 - 75903 + F 100 -12.6 -4.128 | AACATTTAGTTCTTA GTTTTTAGGG TGTA CCCTAAAAAC TTTATATATAAAAAT PEPE_0071 75938 - 78595 + | outer membrane protein TERM 90 78654 - 78638 - f 90 -9.4 -4.21098 | opp_overlap 78638 ACACTAAGTTTAAAA CCGAGC AGATA GCTCGG TTTTTTAGTAATAAA TERM 91 78638 - 78654 + F 100 -9.4 -5.1861 | opp_overlap 78638 ACACTAAGTTTAAAA CCGAGC AGATA GCTCGG TTTTTTAGTAATAAA TERM 92 79261 - 79271 + G 73 -4 -5.1167 | AGTTGGTTCTTAATG TTAG TTA CTAA TTTTTATATTGCCTT TERM 93 79738 - 79751 + G 76 -3.9 -5.33785 | TTTCCAGCGATGTTT CTATA CCGT TATAG TTTTTTATGGTCATT TERM 94 80920 - 80906 - g 76 -2.8 -5.40004 | overlap 80898 CATTAAATGAAAAAA TTTTCC AAC GGCAAA TAGAACTAGCTCGGA TERM 95 81187 - 81200 + G 78 -3.1 -5.35224 | opp_overlap 81187 GCATGGTTAACAATA CTTGG TCTA TCAAG TTTTATTTTTGTACA PEPE_0072 78691 - 81252 + | hypothetical protein TERM 96 81306 - 81338 + F 72 -3.6 -5.28481 | gap 1, opp_overlap 81299 AAGTAAATTAAAAAA GTGACTTATTTTAGA TTTA TCTGAA-TAGGTCGC TTTTTTAGTTGGATA PEPE_0073 81450 - 82235 + | glucose-1-dehydrogenase TERM 97 82274 - 82261 - T 100 -8.1 -5.63517 | GGGGTAAATAAAAAA GACCG CGAA CGGTC CTAAAAATAATGAAT TERM 98 82309 - 82346 + T 84 -10 -3.46304 | opp_overlap 82314, overlap 82314 ATGTTTAATCATCGC GAAAATTTGGCCGCCA TTAATT TTGCGGCCAAATTTTA TTAATCTCTTTTAAA TERM 99 82314 - 82341 + T 100 -9.9 -4.77983 | opp_overlap 82314, overlap 82309 TAATCATCGCGAAAA TTTGGCCGCCA TTAATT TTGCGGCCAAA TTTTATTAATCTCTT TERM 100 82341 - 82314 - T 90 -9.9 -4.12902 | opp_overlap 82314 82309 TAATCATCGCGAAAA TTTGGCCGCCA TTAATT TTGCGGCCAAA TTTTATTAATCTCTT PEPE_0074 83206 - 82325 - | transcriptional regulator PEPE_0075 83353 - 84213 + | aldo/keto reductase PEPE_0076 84234 - 85277 + | threonine dehydrogenase related Zn-dependent dehydrogenase PEPE_0077 85747 - 86238 + | phosphotransferase system IIA component PEPE_0078 86273 - 87103 + | beta-glucoside operon antiterminator TERM 101 87594 - 87604 + G 71 -3.2 -5.17786 | CGGAACTAAAACGAC GTTG TAT CAGC TTTTTACTTTTGTTG PEPE_0079 87130 - 88581 + | beta-glucosides PTS, EIIBC TERM 102 88709 - 88682 - g 70 -7 -3.86312 | AGGGATAATTAATAA TGTAGGCGTGAT GGTT AACATGCCTACA ACCTTGGACGGATTG PEPE_0080 88584 - 89342 + | hypothetical protein TERM 103 89470 - 89428 - T 93 -9.3 -4.788 | opp_overlap 89428 89455 AAAGCAACTTAAAAA GTGAGCCCTCAAGGTGA ATTTATTGA TCATCTTGAAGACTCAC TTTTAGATGTTTTGA TERM 104 89428 - 89470 + T 79 -7.1 -4.35581 | opp_overlap 89428, overlap 89455 AAAGCAACTTAAAAA GTGAGCCCTCAAGGTGA ATTTATTGA TCATCTTGAAGACTCAC TTTTAGATGTTTTGA PEPE_0081 90000 - 89722 - | prebacteriocin PEPE_0082 90197 - 90015 - | prebacteriocin TERM 105 91818 - 91797 - g 73 -3.8 -5.11063 | overlap 91799 ACCAGTTAACAAAAA TCGGATTT TCTAGT AAATCCAA TCATTCCGGACTTGG PEPE_0083 90635 - 91933 + | signal transduction protein PEPE_0084 91952 - 92698 + | response regulator PEPE_0085 92932 - 95106 + | bacteriocin-processing peptidase TERM 106 95286 - 95342 + T 100 -17.8 -2.71101 | opp_overlap 95299, overlap 95299 TACAAAATTGATTAA TGCAGTATAAAAAGGAATCCATTACT CACTC AGTGATGGATTCCTTTTTATACTTTG TACCTTGTTTCCACG TERM 107 95329 - 95299 - T 100 -11.3 -4.92783 | opp_overlap 95299 95286 AATGCAGTATAAAAA GGAATCCATTACT CACTC AGTGATGGATTCC TTTTTATACTTTGTA TERM 108 95299 - 95329 + T 100 -13.5 -5.06735 | opp_overlap 95299, overlap 95286 AATGCAGTATAAAAA GGAATCCATTACT CACTC AGTGATGGATTCC TTTTTATACTTTGTA PEPE_0086 96303 - 95389 - | ABC-type metal ion transport system, periplasmic component/surface adhesin TERM 109 96386 - 96362 - R 74 -6.7 -4.2408 | CTATAAAAGTATAAA TAATAAAAAAT ACT ATCTTTTATTA GTCCTATTTTTTTTA PEPE_0087 96493 - 96374 - | hypothetical protein TERM 110 96657 - 96711 + H 74 -7.4 -4.00526 | opp_overlap 96660 96663 96677 96706, overlap 96665 96706 AAAATTTACATTATT AGATCACCTCCTAATCTAAATAGTAA TGA TTACTATTTAGATTAGGATATTAACA TTTAATTGTCAAATT TERM 111 96708 - 96660 - H 100 -14.3 -2.84812 | opp_overlap 96657 96665 96706, overlap 96663 96677 96706 ATTTACATTATTAGA TCACCTCCTAATCTAAATAGTAA TGA TTACTATTTAGATTAGGATATTA ACATTTAATTGTCAA TERM 112 96705 - 96663 - H 100 -16 -2.67992 | opp_overlap 96657 96665, overlap 96660 96677 TACATTATTAGATCA CCTCCTAATCTAAATAGTAA TGA TTACTATTTAGATTAGGATA TTAACATTTAATTGT TERM 113 96665 - 96703 + H 100 -20.8 -3.13784 | opp_overlap 96663 96660 96677, overlap 96657 CATTATTAGATCACC TCCTAATCTAAATAGTAA TGA TTACTATTTAGATTAGGA TATTAACATTTAATT PEPE_0088 97081 - 97473 + | hypothetical protein TERM 114 97547 - 97518 - T 100 -7.8 -5.60556 | opp_overlap 97518 AAGATAAAATAAAAA GAGCATCACTGC TAAAAC GCGGTGGTGCTC TTTTTGGATGATTAT TERM 115 97518 - 97547 + T 100 -12.2 -4.71382 | opp_overlap 97518 AAGATAAAATAAAAA GAGCATCACTGC TAAAAC GCGGTGGTGCTC TTTTTGGATGATTAT PEPE_0089 98083 - 97565 - | acetyltransferase TERM 116 98974 - 98958 - g 75 -7.9 -4.15788 | AAGTTGGTTAAGAAA GCCGAAG CAA CCCCGGC CCGTTTTGTGCGGAT PEPE_0090 98313 - 100124 + | cation transport ATPase TERM 117 100259 - 100237 - f 84 -6.3 -5.15634 | opp_overlap 100237 TATTCTATTAAAAAA CACGTTTGA TAGTT TCAGACGTG TTTTTTAAAACCAAC TERM 118 100237 - 100259 + F 95 -8.5 -5.00616 | opp_overlap 100237 TATTCTATTAAAAAA CACGTTTGA TAGTT TCAGACGTG TTTTTTAAAACCAAC PEPE_0091 100382 - 101677 + | cellobiose-specific PTS system IIC component PEPE_0092 101661 - 102524 + | alpha/beta hydrolase superfamily protein TERM 119 102616 - 102583 - T 100 -6.9 -5.64304 | gap 1, opp_overlap 102583 GAATATAATAAAAAA GTCTAACTTAGTGGGA TGA TTCCA-TAAGTCAGAC TTTTTTATCCATATA TERM 120 102583 - 102616 + T 88 -6.9 -5.29782 | gap 1, opp_overlap 102583 GAATATAATAAAAAA GTCTAACTTAGTGGGA TGA TTCCA-TAAGTCAGAC TTTTTTATCCATATA PEPE_0093 103285 - 102635 - | hypothetical protein TERM 121 103529 - 103552 + r 95 -8.9 -5.12707 | opp_overlap 103529 ATGTTCTCAAAAAAA TACGTCTGG AAACTA CCAGGCGTA TTTTTTGGACTTTGG TERM 122 103552 - 103529 - R 93 -6.7 -5.40474 | opp_overlap 103529 ATGTTCTCAAAAAAA TACGTCTGG AAACTA CCAGGCGTA TTTTTTGGACTTTGG PEPE_0094 104524 - 103637 - | transcriptional regulator TERM 123 105482 - 105462 - g 70 -2.5 -5.0538 | overlap 105466 105479 GTGTATGGCAAAAAA GGAATGTTT GTT AAACAGACC AAAGATCGCCAAGAG PEPE_0095 104739 - 105767 + | dehydrogenase related protein PEPE_0096 105791 - 106765 + | dehydrogenase related protein PEPE_0097 106781 - 107347 + | acetyltransferase TERM 124 107458 - 107511 + F 74 -7.6 -3.86835 | opp_overlap 107444 107441 107440 107463, overlap 107463 ATTTTTTATAGAGTA TAAAATACCCCATGACTTTTAGAT ACATAC ATCTGAAAGCCATGGGGTATTCAC TTTGGTACTCTTTAA TERM 125 107506 - 107463 - f 100 -17 -4.53163 | opp_overlap 107458 107463, overlap 107444 107441 107440 TTATAGAGTATAAAA TACCCCATGACTTTTAGATA CATA CATCTGAAAGCCATGGGGTA TTCACTTTGGTACTC TERM 126 107463 - 107506 + F 100 -16.3 -3.31415 | opp_overlap 107444 107441 107440 107463, overlap 107458 TTATAGAGTATAAAA TACCCCATGACTTTTAGAT ACATAC ATCTGAAAGCCATGGGGTA TTCACTTTGGTACTC PEPE_0099 107735 - 108685 + | alpha/beta fold family hydrolase TERM 127 109622 - 109678 + G 71 -3.8 -4.91511 | gap 1, opp_overlap 109625 109629 109630, overlap 109631 109660 ACCATTTTGGTTTAA TCATAAAGCGGCTGCGTCTCAAGAGTA ATCT TTCTTTTGGG-CGCAGCCCTTTTAATA TTTTTGTAGTAGAAT PEPE_0100 108687 - 109649 + | diacylglycerol kinase family protein TERM 128 109631 - 109669 + F 85 -11.1 -3.34821 | gap 1, opp_overlap 109629 109630 109625, overlap 109622 109660 GTTTAATCATAAAGC GGCTGCGTCTCAAGAGTA ATCT TTCTTTTGGG-CGCAGCC CTTTTAATATTTTTG TERM 129 109660 - 109670 + F 85 -8.2 -4.62102 | opp_overlap 109629 109630 109625, overlap 109631 109622 AGTAATCTTTCTTTT GGGC GCA GCCC TTTTAATATTTTTGT PEPE_0101 109733 - 110560 + | alpha/beta hydrolase superfamily protein PEPE_0102 110656 - 110976 + | Thiol-disulfide isomerase and thioredoxin TERM 130 110999 - 111033 + F 100 -17.4 -5.86976 | opp_overlap 110999 111011 AGTTAATTCTAGCAA GCTGTATAGAAATCGA TTT TCGATTACTATACAGC TTTTTTATTTTCTAC TERM 131 111033 - 110999 - f 100 -17.4 -3.1886 | opp_overlap 110999, overlap 111011 AGTTAATTCTAGCAA GCTGTATAGAAATCGA TTT TCGATTACTATACAGC TTTTTTATTTTCTAC PEPE_0103 111311 - 112117 + | C-di-GMP-specific phosphodiesterase TERM 132 112573 - 112562 - g 73 -4.4 -4.88258 | overlap 112551 AAAACCAGAACAAAA TCTG GATA CAGA CGAAATTAAAGAAAT PEPE_0104 112119 - 112622 + | hypothetical protein PEPE_0105 112632 - 113957 + | glycosyltransferase TERM 133 113991 - 113955 - f 79 -6.8 -4.67048 | opp_overlap 113960, overlap 113960 TCACTTCAAAATAAA TAAAACATATTCCG TTTTATCTG CGGAATATGTTTTT TGTTTGCCGTGAAAG TERM 134 113986 - 113960 - f 88 -6.7 -5.26247 | opp_overlap 113960, overlap 113955 TCAAAATAAATAAAA CATATTCCG TTTTATCTG CGGAATATG TTTTTTGTTTGCCGT TERM 135 113960 - 113986 + F 100 -7.4 -5.64421 | opp_overlap 113960 113955 TCAAAATAAATAAAA CATATTCCGT TTTATCT GCGGAATATG TTTTTTGTTTGCCGT PEPE_0106 114093 - 115529 + | Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase PEPE_0107 115638 - 116438 + | hypothetical protein TERM 136 117109 - 117126 + T 82 -8.5 -4.09864 | opp_overlap 117107 117105 117109 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 137 117126 - 117109 - T 74 -8.5 -3.18386 | opp_overlap 117109, overlap 117107 117105 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 138 118458 - 118439 - T 72 -9.2 -2.65808 | opp_overlap 118442 118445, overlap 118436 118451 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 139 118521 - 118539 + T 89 -7.5 -5.00196 | AAGTTTTGTTTAGTT TTGAGAG GTTTA CTCTCAA TTTTGTTCTTTGAAA TERM 140 118698 - 118682 - T 75 -9.5 -2.86185 | opp_overlap 118681, overlap 118679 AAACTCAATTAATCA CTTTACC GTA GGTAAAG ATAGGTTAAGTTAGG TERM 141 118996 - 118977 - T 95 -12.2 -3.66803 | opp_overlap 118976 118975 CGGGAAGAGCCCAAA CCAGGAAG CTTG CTTCCTGG GGTTGTAGGACTGAA TERM 142 121865 - 121845 - T 70 -8.3 -3.1355 | opp_overlap 121845, overlap 121848 GCCATGCACATCGAA GAATCTTCC GTT GGAAGGTTC TTTTTTTGTGTCTAA TERM 143 121845 - 121865 + T 100 -10.5 -5.76633 | opp_overlap 121845 121848 GCCATGCACATCGAA GAATCTTCC GTT GGAAGGTTC TTTTTTTGTGTCTAA TERM 144 121979 - 121939 - T 89 -12.1 -3.2302 | opp_overlap 121945, overlap 121945 CCTAATGAGAACATA TTAAAAGAATCGTCAGCCA TCA TCGCTAACGATTCTTTTTA GTAGGTAATATTATT TERM 145 121973 - 121945 - T 100 -11.1 -4.44819 | opp_overlap 121945, overlap 121939 GAGAACATATTAAAA GAATCGTCAGCCA TCA TCGCTAACGATTC TTTTTAGTAGGTAAT TERM 146 121945 - 121973 + T 93 -8.9 -4.75372 | opp_overlap 121945 121939 GAGAACATATTAAAA GAATCGTCAGCCA TCA TCGCTAACGATTC TTTTTAGTAGGTAAT PEPE_0111 123141 - 121990 - | succinyl-diaminopimelate desuccinylase PEPE_0112 123321 - 124337 + | oxidoreductase, aryl-alcohol dehydrogenase related TERM 147 125084 - 125074 - g 70 -8.2 -3.27653 | overlap 125072 ATTCGGAGTACAATA CGCG ACG CGCG GAATGTGAACAAGCC TERM 148 125550 - 125535 - g 76 -9 -3.78329 | TTCTACGAAGCCAAA GTGGTC GATG GACCAC ATAAAATTTAAGTAA PEPE_0113 124389 - 125561 + | galactokinase TERM 149 125603 - 125571 - f 74 -2.1 -5.64006 | opp_overlap 125571, overlap 125574 ATTTAAGTAAAAAAA CATGAAATGAG AACCGCAATAA CTCATTTCGTG GTTTTTTTACTTTCT PEPE_0114 125793 - 126374 + | RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like PEPE_0115 126609 - 126827 + | hypothetical protein TERM 150 127469 - 127456 - g 89 -3.9 -5.7946 | GTGGTAAGAAAAAAA TACTT GAGC AAGTA CATCTGTCGGGGAAG PEPE_0116 127386 - 127526 + | hypothetical protein TERM 151 127682 - 127717 + F 91 -7.8 -5.18643 | TTACAAGTAAAGTAA TAGTCTAGAAGTTTTG ATGA TAAAATTTCTGGGCTA TTTTCTTTTGCTTAA TERM 152 127801 - 127791 - f 74 -3.2 -5.50774 | CATAATAAACAAAAA CGCT ATA AACG CCTTAACCATGGGAT TERM 153 130509 - 130534 + G 70 -6.9 -3.74747 | gap 1, opp_overlap 130508 130527, overlap 130510 TCTCTGGTAAAGGAG CTGCG-GGTGAT ACA ATCACCGCGCAC TTTAGTGACGGTTCA TERM 154 130510 - 130533 + G 76 -10.4 -2.84527 | gap 1, opp_overlap 130508 130527, overlap 130509 CTCTGGTAAAGGAGC TGCG-GGTGAT ACA ATCACCGCGCA CTTTAGTGACGGTTC PEPE_0117 128009 - 133039 + | hypothetical protein TERM 155 133075 - 133050 - f 72 -2.7 -5.37345 | gap 1, overlap 133033 133053 TGTAACCACAAAAAA TCA-TGGTTACT TAA AGTAACAAATGA TGGTGGTAGGGCCAT TERM 156 133098 - 133138 + F 85 -10.7 -3.41359 | opp_overlap 133098 133103, overlap 133103 AGGGCCATAGAATAG CAAAACACGTTATTAGTTT ATA GGACTGATAACGTGTTTTC TGTTACTTTTACCCA TERM 157 133103 - 133133 + F 100 -10.6 -4.77629 | opp_overlap 133103 133098, overlap 133098 CATAGAATAGCAAAA CACGTTATTAGTTT ATA GGACTGATAACGTG TTTTCTGTTACTTTT TERM 158 133133 - 133103 - f 78 -7 -4.48263 | opp_overlap 133098 133103, overlap 133098 CATAGAATAGCAAAA CACGTTATTAGT TTATAGG ACTGATAACGTG TTTTCTGTTACTTTT TERM 159 137923 - 137913 - g 71 -8.2 -3.44051 | TGTTGATGACGATAA GGGC GGC GCCC AAGTCGGTGACATCG TERM 160 139368 - 139381 + G 70 -8.1 -3.28637 | opp_overlap 139367 AAGTCGTAGTAAAGC CGGTG CTTA CACCG TTGATGATGTTGATA PEPE_0118 133426 - 142479 + | adhesion exoprotein TERM 161 142551 - 142518 - T 100 -11.1 -5.18355 | opp_overlap 142518 CGTAAAAACGAAAAA TCTCCACTGTTAGAT AAAA ATCTGACGGTGGAGA TTTTTTTGGATAATA TERM 162 142518 - 142551 + T 100 -15.5 -5.48825 | opp_overlap 142518 CGTAAAAACGAAAAA TCTCCACTGTTAGAT AAAA ATCTGACGGTGGAGA TTTTTTTGGATAATA PEPE_0119 143326 - 142598 - | AraC-type DNA-binding transcriptional regulator TERM 163 142992 - 142973 - G 80 -2.9 -5.58454 | GTTATATGAAAAAAA TGTCTGA ACAATA TCAAACA AAATATCACGAAAAT TERM 164 143110 - 143097 - G 75 -2.4 -5.42862 | overlap 143098 AGATGGGTAAAAAAA CTGA TATTGG TCAG GCCGCCTACCAAACC TERM 165 143861 - 143835 - R 74 -5.2 -4.77775 | gap 1, overlap 143836 AGTGGACAAAACAAA CGCGGA-TGCT TTAAGT AGCAATCCGCA GAGTAAATGAATTAA TERM 166 144223 - 144256 + r 100 -13.3 -5.18357 | overlap 144216 TTTCCCCTTTGGAAG TCTCCAGTGTTAGGT GAAA ATCTAGCACTGGGGA TTTTTTGATGGATTA TERM 167 144295 - 144318 + r 100 -10.3 -4.9218 | opp_overlap 144295 GAAGGTAAATAAAAA CGCCATCCT GCTGAA GGGATGGCG TTTTTATGATAGCTA TERM 168 144318 - 144295 - R 100 -9.6 -5.33026 | opp_overlap 144295 GAAGGTAAATAAAAA CGCCATCC TGCTGAAG GGATGGCG TTTTTATGATAGCTA PEPE_0120 144580 - 144335 - | hypothetical protein TERM 169 144380 - 144369 - G 70 -5.8 -4.21827 | opp_overlap 144369 144367, overlap 144359 TCAAAGACGTTAAAA CGTC GGAT GACG TATTGATTGCGATTA TERM 170 144613 - 144626 + r 78 -6.7 -4.4715 | opp_overlap 144613 GATAAGTAAATTATA CGAAC AAAC GTTCG TTTTGTCAATTAGCA PEPE_0121 145412 - 144681 - | hypothetical protein PEPE_0122 145868 - 145419 - | response regulator TERM 171 146016 - 145967 - R 100 -10.3 -5.0133 | gap 1, opp_overlap 145967 TAGGCGGTCAAAAAA CTGTAAGAAAATGATTGCAGC-AG AAC CTAGCTGAATTGATTTTCTTACAG TTTTTAAGTGCTTAT TERM 172 145967 - 146016 + r 95 -10.3 -4.71382 | gap 1, opp_overlap 145967 TAGGCGGTCAAAAAA CTGTAAGAAAATGATTGCAGC-AG AAC CTAGCTGAATTGATTTTCTTACAG TTTTTAAGTGCTTAT PEPE_0123 147701 - 146028 - | hypothetical protein PEPE_0124 147790 - 149235 + | hypothetical protein TERM 173 149241 - 149283 + F 70 -4.4 -4.87318 | gap 2, opp_overlap 149241, overlap 149255 149274 TAATAGCTAACCAAA GACTTTTTAAC-G-GCGTCC GCTCG GGACTTACTGTTAAAAAGTC TTTTTGAATTTTAAG TERM 174 149407 - 149385 - f 85 -7 -4.95758 | overlap 149386 ATTATATTATAAAAA CGTGCTAGTC CTT GATTAGCACA CGGGGGGATCATTCT TERM 175 149406 - 149386 - f 73 -8.3 -3.5637 | overlap 149385 TTATATTATAAAAAC GTGCTAGTC CTT GATTAGCAC ACGGGGGGATCATTC TERM 176 149983 - 149967 - g 74 -5.9 -4.66833 | opp_overlap 149967 TCCTAACGCTAAAAA TATCACG ATT CGTAATA TGTTGACCATGACCT TERM 177 150541 - 150525 - g 71 -3.5 -5.07486 | opp_overlap 150525 150526 150528, overlap 150526 CATTTTCAACAAAAA GGCCGGC AAT GCCGTCG TTTTGTTGGGAAATC TERM 178 150528 - 150538 + G 70 -8.2 -3.25538 | opp_overlap 150526 150525, overlap 150526 150525 TTTCAACAAAAAGGC CGGC AAT GCCG TCGTTTTGTTGGGAA PEPE_0125 149572 - 150645 + | Beta-lactamase class C related penicillin binding protein TERM 179 151418 - 151442 + G 71 -6.5 -4.18164 | TTAATGTTACTTATT TCAGTCCTA GCATTTA TGGGACTGA TTGTTTTCACCGGTT PEPE_0126 150668 - 151687 + | glycosyltransferase PEPE_0127 151719 - 151883 + | hypothetical protein PEPE_0128 151946 - 153076 + | outer membrane protein TERM 180 153122 - 153141 + T 79 -5 -5.21709 | gap 1, opp_overlap 153112 153122 TCTAATACAAAAAAA GGCGTC-CA CTG TGAGACGTC TTTTTTGATATAGCA TERM 181 153141 - 153122 - T 79 -2.8 -5.80817 | gap 1, opp_overlap 153122, overlap 153112 TCTAATACAAAAAAA GGCGTC-CA CTG TGAGACGTC TTTTTTGATATAGCA PEPE_0129 154617 - 153181 - | major facilitator superfamily permease TERM 182 154796 - 154829 + r 74 -3.2 -5.4833 | gap 1, opp_overlap 154796 GTGGCACGACAAAAA GTAGCAAC-GTCTTA TAAAT TAAGTCGGATGCTAC TTTTTTGTTACGTAA PEPE_0130 155897 - 154851 - | aspartate semialdehyde dehydrogenase PEPE_0131 157080 - 155899 - | aromatic amino acid aminotransferase TERM 183 155928 - 155940 + g 72 -9.1 -3.29739 | GAACAAATTTTGTAA GCCGT CGA ACGGC TTCGTGTAAGTTGGA TERM 184 156124 - 156113 - G 75 -2.2 -5.36364 | gap 1, overlap 156114 GCAAAAAGATAAAAA GTCCC AGC GGG-C GAGCGAACTTGAAAA PEPE_0132 157857 - 157093 - | dihydrodipicolinate reductase TERM 185 157676 - 157702 + g 74 -9.4 -3.14564 | opp_overlap 157675 157674, overlap 157699 AAATCAATCCAAATG TCAGCTTGCGGA AGT TCAGCTAGCTGA TTAGTGACCAAATAA PEPE_0133 158772 - 157873 - | dihydrodipicolinate synthase PEPE_0134 159929 - 158775 - | metal-dependent amidase/aminoacylase/carboxypeptidase TERM 186 158942 - 158965 + g 82 -5.2 -5.47399 | GCAAGAATCCGAAAT CTTCGCCGGT CATT GCTGGTGGAG TTTTTTTAAACTTAA TERM 187 159258 - 159242 - G 85 -10.1 -4.14392 | TTCCAAGGGTTAAAA CCCCACC TTC GATGGGG TTGACATTACGAGCA PEPE_0135 160653 - 159943 - | tetrahydrodipicolinate N-succinyltransferase PEPE_0136 161966 - 160674 - | diaminopimelate decarboxylase TERM 188 162351 - 162380 + H 79 -3.7 -5.54338 | gap 2 TTAGTTAATTACTAG CGCCCATTTTCGT TTTTTT ACGAA--TGGGCG TTTTTATTTTGGTTA PEPE_0137 162431 - 163810 + | aspartate kinase TERM 189 164431 - 164470 + G 74 -10.2 -2.57132 | overlap 164430 GGAGTTAACGTGAGC TTTGGACGAGTCATTGGT CAGA ATCAATTGTTCGTCCAAA CTTATGAACGGGGGG PEPE_0138 163810 - 164799 + | diaminopimelate epimerase PEPE_0139 164945 - 166147 + | cyanate permease TERM 190 166187 - 166149 - T 100 -11.9 -3.99986 | opp_overlap 166154, overlap 166154 CCAAGAAAATTTAAA GAAAACCTCCGAATTTC GTTTT GAAGTTCGGAGGTTTTT ATTTTTGGGTACGAA TERM 191 166182 - 166154 - T 100 -11.8 -4.97824 | opp_overlap 166154, overlap 166149 AAAATTTAAAGAAAA CCTCCGAATTTC GTTTT GAAGTTCGGAGG TTTTTATTTTTGGGT TERM 192 166154 - 166182 + T 100 -14.7 -5.63236 | opp_overlap 166149 166154 AAAATTTAAAGAAAA CCTCCGAATTTCG TTT TGAAGTTCGGAGG TTTTTATTTTTGGGT PEPE_0140 166932 - 166186 - | transcriptional regulator TERM 193 167279 - 167269 - g 73 -8.2 -3.69469 | overlap 167267 ATACTTTAACAAAGA GGGG AAT CCCC AATAAATTTATTCAT PEPE_0141 167049 - 167984 + | fructose-1-phosphate kinase-like protein TERM 194 169241 - 169251 + G 77 -6.8 -4.58466 | overlap 169239 ATTAGCGTTCCAGCA CCAC ATG GTGG TTTTATCGTTCTACC TERM 195 169269 - 169282 + G 76 -5.3 -4.97402 | opp_overlap 169280, overlap 169280 TTATCGTTCTACCTT TGGTT AATA AACCA TTTTTATGGGTTTTG PEPE_0142 167981 - 169870 + | phosphotransferase system fructose-specific component IIB PEPE_0143 169986 - 170978 + | tagatose 1,6-diphosphate aldolase TERM 196 171019 - 170986 - f 80 -5.3 -5.30616 | opp_overlap 170989, overlap 170989 TGATGTAAATAAAAA GAATGCTTCGTAGCG AATT CGTTATGAAGCATTT TTATTTTTAAATATT TERM 197 170989 - 171016 + F 100 -11.4 -5.63236 | opp_overlap 170986 170989 TGTAAATAAAAAGAA TGCTTCGTAGCG AATT CGTTATGAAGCA TTTTTATTTTTAAAT TERM 198 171016 - 170989 - f 79 -7 -4.72696 | opp_overlap 170989, overlap 170986 TGTAAATAAAAAGAA TGCTTCGTAGCG AATT CGTTATGAAGCA TTTTTATTTTTAAAT TERM 199 172006 - 171982 - g 78 -10 -3.21962 | opp_overlap 171981 171980 171983, overlap 171977 ACATTATCAAGCTAA CCCCGCCTTT TATCC AAAGGCGGGT GACTTTGACCAAAAC TERM 200 171983 - 172005 + G 91 -13.5 -2.64155 | opp_overlap 171982 171977, overlap 171981 171980 CATTATCAAGCTAAC CCCGCCTTT TATCC AAAGGCGGG TGACTTTGACCAAAA TERM 201 172574 - 172550 - g 89 -6.4 -5.44119 | TGGATTGGAAAAAAA TCGCCCCTCT TTGGT AGAACGGCGA TGACCACTTTTGAAC PEPE_0144 171149 - 173065 + | fructose-1,6-bisphosphatase PEPE_0145 173960 - 173055 - | Mg2+ and Co2+ transporter TERM 202 174762 - 174750 - g 70 -7.7 -3.55622 | CGGAATTCGGGTAAA TGGTG TCG CACCA GGCCCAATTTGGACA PEPE_0146 174070 - 174963 + | Short-chain alcohol dehydrogenase PEPE_0147 174976 - 175149 + | hypothetical protein PEPE_0148 176359 - 175229 - | hypothetical protein TERM 203 175551 - 175567 + g 78 -9.4 -3.55622 | opp_overlap 175536, overlap 175545 GCTTCTGCCCGTGCA GCGGCT TCCGC AGCCGC TTTGGCGGCCTTAGC TERM 204 176379 - 176369 - R 74 -3.2 -5.38054 | CTTCATAAACAAAAA TCCC CCA GAGA CTAGTTACTTAATAA PEPE_0149 177264 - 176461 - | hypothetical protein TERM 205 177015 - 176999 - G 71 -6.5 -4.16909 | ATGCGAATAAAAATA TCCCGAC AAG GTTGGGA GCGTAAAAAATATCG PEPE_0150 177639 - 178316 + | Mg2+ transporter TERM 206 178373 - 178336 - T 80 -7.2 -4.68919 | gap 1, opp_overlap 178336, overlap 178330 178331 AAATATAAATGAAAA GATTTCAGCGAAGGTGA GTTAT TTACCCT-GCTGAAATC TTTTTTAATTTATTT TERM 207 178336 - 178373 + T 100 -7.9 -5.48163 | gap 1, opp_overlap 178330 178336 178331 AAATATAAATGAAAA GATTTCAGCGAAGGTGAG TTA TTTACCCT-GCTGAAATC TTTTTTAATTTATTT PEPE_0151 179195 - 178383 - | RpiR family transcriptional regulator TERM 208 179281 - 179253 - R 91 -5.3 -5.79595 | opp_overlap 179253 GCTGAAAATAAAAAA GACTGGAACTTTT TTC AAGTATTCCAGTC TTTAATACAGGGGTC PEPE_0152 179986 - 179297 - | N-acetylmannosamine-6-phosphate 2-epimerase TERM 209 180197 - 180213 + r 74 -2.3 -5.68023 | TCTTCGGCAGTAGAC GTAAAAA TAT TTTTCAC TTTTTTTAATTGTAG TERM 210 180267 - 180239 - R 100 -8.2 -5.54907 | opp_overlap 180239 180241 TGTAGAAAATAAAAA CACTGAACCTCT TTCAG AAAGGCTCAGCG TTTTTTTTAAATCTG TERM 211 180239 - 180267 + r 78 -2.3 -5.83822 | opp_overlap 180239, overlap 180241 TGTAGAAAATAAAAA CACTGAACCTCTT TCA GAAAGGCTCAGCG TTTTTTTTAAATCTG PEPE_0153 181608 - 180274 - | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme PEPE_0154 182623 - 181775 - | AraC family transcriptional regulator TERM 212 181828 - 181838 + g 76 -4 -5.24531 | overlap 181819 GATATTCTGATGGTG TACT ATT AGTA TTTTTTCTGAAAAGT TERM 213 183738 - 183728 - g 76 -4 -5.20328 | TTGTAAAAAAACAAA TGTA CAT TACA GGAAATGTGGGACAA PEPE_0155 182776 - 184758 + | hypothetical protein PEPE_0156 184771 - 186117 + | Na+/xyloside symporter related transporter TERM 214 186182 - 186153 - f 70 -8.1 -3.16302 | opp_overlap 186153, overlap 186152 CAACACACTTAAAAG GTTTAGTTTCA GAAATCAA TGAAACTAAAC TTTTTTATATAATTA TERM 215 186153 - 186182 + F 100 -8.1 -5.42131 | opp_overlap 186153 186152 CAACACACTTAAAAG GTTTAGTTTCA GAAATCAA TGAAACTAAAC TTTTTTATATAATTA PEPE_0157 186391 - 187467 + | GntR family transcriptional regulator PEPE_0158 188645 - 187926 - | GntR family transcriptional regulator TERM 216 188739 - 188694 - R 100 -12.9 -4.87893 | opp_overlap 188694 188698 AATGTGAATTAAAAA TTAATCCGAATACCAATTATC ATCA AATGACTGGTATCCGGATTAA TTAGCTGTTTAATCC TERM 217 188694 - 188739 + r 82 -10 -3.25479 | opp_overlap 188694, overlap 188698 AATGTGAATTAAAAA TTAATCCGAATACCAATTAT CATCAA ATGACTGGTATCCGGATTAA TTAGCTGTTTAATCC TERM 218 188757 - 188790 + r 71 -7.8 -3.37796 | gap 1, opp_overlap 188757 AGCTGTTTAATCCAA CTATAATCTTA-ACA TTTTC TGTGTAAGATTATAG TTGTAAATAATGAAA PEPE_0159 189249 - 188929 - | acetyltransferase TERM 219 189152 - 189164 + g 83 -7.7 -4.68601 | opp_overlap 189150 189152 TTCCATTGAGTAATA TGGCT TGA AGCCA TTTGTTCTTTTGCAT PEPE_0160 190663 - 189260 - | C4-dicarboxylate transporter PEPE_0161 191610 - 190675 - | inosine-uridine nucleoside N-ribohydrolase TERM 220 191663 - 191694 + H 100 -16.2 -4.20136 | opp_overlap 191665 191668 191683 TTTCTGAAATTATTA TACAACGTTGTATT ATAA AATACAACGTTGTA TTTAATTTTGAGGGT TERM 221 191692 - 191665 - H 100 -14.4 -2.8934 | opp_overlap 191663, overlap 191668 191683 TCTGAAATTATTATA CAACGTTGTATT ATAA AATACAACGTTG TATTTAATTTTGAGG TERM 222 191689 - 191668 - H 87 -10.3 -3.58802 | opp_overlap 191663, overlap 191665 191683 GAAATTATTATACAA CGTTGTATT ATAA AATACAACG TTGTATTTAATTTTG TERM 223 191975 - 191935 - H 88 -7.1 -4.93547 | opp_overlap 191939 191974, overlap 191937 191939 GGAATCAATTAAAAA GATATAAGGGTTTAAGTTT TTA AAACTTAAACTCTTATTTT TTTATTCTAAAAATT TERM 224 191973 - 191937 - H 86 -9.7 -4.07912 | opp_overlap 191939, overlap 191935 191939 AATCAATTAAAAAGA TATAAGGGTTTAAGTTT TTA AAACTTAAACTCTTATT TTTTTATTCTAAAAA TERM 225 191971 - 191939 - H 95 -12.3 -3.61182 | opp_overlap 191939, overlap 191937 191935 TCAATTAAAAAGATA TAAGGGTTTAAGTTT TTA AAACTTAAACTCTTA TTTTTTTATTCTAAA TERM 226 191939 - 191971 + H 100 -14.5 -5.88565 | opp_overlap 191937 191935 191939 TCAATTAAAAAGATA TAAGGGTTTAAGTTT TTA AAACTTAAACTCTTA TTTTTTTATTCTAAA PEPE_0162 192107 - 193477 + | D-xylose proton-symporter PEPE_0163 193498 - 195093 + | L-ribulokinase (putative) araD 195108 - 195836 + | L-ribulose-5-phosphate 4-epimerase TERM 227 196057 - 196042 - g 70 -6.2 -4.20712 | overlap 196035 CACAACAGCTGAAAA CATTAC AGAG GTAATG AAAGAAGTTAACTAC PEPE_0165 195866 - 197290 + | L-arabinose isomerase TERM 228 197333 - 197360 + F 100 -17.2 -4.81083 | opp_overlap 197333 AAATAATTTATTCAA TGCCACGAAAGA GAAA TCTTTCGTGGCA TTTTTGGTGGTTAAA TERM 229 197360 - 197333 - f 100 -17.2 -3.12021 | opp_overlap 197333 AAATAATTTATTCAA TGCCACGAAAGA GAAA TCTTTCGTGGCA TTTTTGGTGGTTAAA PEPE_0166 197497 - 198603 + | L-alanine dehydrogenase PEPE_0167 198620 - 199675 + | threonine dehydratase PEPE_0168 199708 - 201627 + | hypothetical protein PEPE_0169 201611 - 201973 + | hypothetical protein PEPE_0170 201993 - 203420 + | dipeptidase A PEPE_0171 203639 - 204853 + | GntR family transcriptional regulator PEPE_0172 205015 - 205695 + | N-acetylgalactosamine PTS, EIIC PEPE_0173 205685 - 206485 + | N-acetylgalactosamine-specific PTS system transporter subunit IID PEPE_0174 206497 - 206919 + | phosphotransferase system, mannose/fructose-specific component IIA TERM 230 207005 - 206966 - f 100 -16.2 -3.6215 | gap 1, opp_overlap 206966 TTAAGTGATGTGAAA TCCCCATAATTATTAGATA TTG TA-CTAATAATTATGGGGA TTTTTTATGTAAGAA TERM 231 206966 - 207005 + F 100 -16.2 -5.36441 | gap 1, opp_overlap 206966 TTAAGTGATGTGAAA TCCCCATAATTATTAGATA TTG TA-CTAATAATTATGGGGA TTTTTTATGTAAGAA TERM 232 207068 - 207091 + F 100 -10.4 -5.40072 | opp_overlap 207068, overlap 207089 AGAAATAATGAAAAA CCTAGCAGAA TTTA TTTTGCTAGG TTTTTTTAAAAAAAC TERM 233 207091 - 207068 - f 91 -8.2 -5.05712 | opp_overlap 207068 207089 AGAAATAATGAAAAA CCTAGCAGAA TTTA TTTTGCTAGG TTTTTTTAAAAAAAC PEPE_0175 207256 - 207993 + | GntR family transcriptional regulator PEPE_0176 207980 - 208672 + | GntR family transcriptional regulator PEPE_0178 209176 - 210015 + | mannose-specific PTS system component IIC PEPE_0179 209996 - 210817 + | mannose-specific PTS system component IID TERM 234 213136 - 213148 + T 73 -7.7 -3.58037 | TATGACGGATTTAGT TGGTG GAA CACCA TTTAACACGTTAGTC TERM 235 213371 - 213400 + T 100 -18.1 -5.47431 | opp_overlap 213371 GGAAATTAAAATAAA TCCATTCAGTGAG GATC CTCACTGAATGGA TTTTTTGTATCTTCA TERM 236 213400 - 213371 - T 100 -18.1 -4.82998 | opp_overlap 213371 GGAAATTAAAATAAA TCCATTCAGTGAG GATC CTCACTGAATGGA TTTTTTGTATCTTCA PEPE_0182 214562 - 213441 - | Zn-dependent alcohol dehydrogenase PEPE_0183 214745 - 215602 + | transcriptional regulator/sugar kinase TERM 237 215655 - 215686 + T 100 -16.1 -5.93252 | opp_overlap 215655 TCTAATTACAAAAAA CGTCCTTGATGTA GAGAAA TACATCAAGGACG TTTTTTGTTTTTAAA TERM 238 215686 - 215655 - T 100 -16.1 -5.37345 | opp_overlap 215655 TCTAATTACAAAAAA CGTCCTTGATGTA GAGAAA TACATCAAGGACG TTTTTTGTTTTTAAA PEPE_0184 217986 - 215704 - | alpha-xylosidase YicI TERM 239 218751 - 218780 + G 72 -5.1 -4.71791 | ATTACCAATGGTTAA CTTTTTTGGTGGT GGCA ATCAACAAAAAGG TTTCTTTATTAGTGT PEPE_0185 218212 - 219597 + | Na+/xyloside symporter related transporter TERM 240 219750 - 219738 - g 80 -7.7 -4.44046 | GTTAGCCTAAACAAA GTGAC TGT GTCAC AAATAATCAATAAAT PEPE_0186 219621 - 220772 + | transcriptional regulator/sugar kinase, xylose operon regulator TERM 241 221249 - 221262 + G 82 -8.1 -4.33675 | overlap 221255 CGTTTCGTTGCGGGT GGTGC TACA GCACC TTTTGCTGATATCGT TERM 242 221530 - 221508 - g 81 -11.4 -2.58425 | overlap 221502 221507 221505 221510 CAAAGGAACCAACAT CACATCAGTA TGA TACTGATGCG GCAACAACAATTGCC TERM 243 221528 - 221510 - g 76 -10.4 -2.81814 | overlap 221502 221508 221507 221505 AAGGAACCAACATCA CATCAGTA TGA TACTGATG CGGCAACAACAATTG PEPE_0187 220787 - 222130 + | xylose isomerase TERM 244 222154 - 222138 - f 91 -9.4 -4.39407 | opp_overlap 222138 GCAAATAAGCGAAAA GGTGGC GAATT GCCACC TTTTTATTTTGAAGA TERM 245 222138 - 222154 + F 100 -10.1 -5.45802 | opp_overlap 222138 GCAAATAAGCGAAAA GGTGGCG AAT TGCCACC TTTTTATTTTGAAGA TERM 246 223155 - 223145 - g 73 -8.2 -3.63305 | CACAGAATTTGTAAA CGCC GCA GGCG ATTCCACCGTTGGTG PEPE_0188 222180 - 223685 + | xylulokinase TERM 247 223701 - 223726 + F 100 -9.8 -5.37043 | opp_overlap 223700 AGATTATTTATAGAG GCTTTCTCCA AATTAG TGGAGAAGGC TTTTTTATGTGAAAT PEPE_0189 223883 - 224917 + | putrescine carbamoyltransferase PEPE_0190 224962 - 226347 + | amino acid transporter PEPE_0191 226344 - 227438 + | agmatine deiminase TERM 248 227460 - 227478 + F 100 -8.9 -5.88565 | opp_overlap 227458 227459 227460 ATACAATAATAAAGG CTGGAAG CAGAC CTTCCAG TTTTTTTGTTCTCAA TERM 249 227478 - 227460 - f 71 -8.9 -2.58098 | opp_overlap 227460, overlap 227458 227459 ATACAATAATAAAGG CTGGAAG CAGAC CTTCCAG TTTTTTTGTTCTCAA PEPE_0192 227517 - 228461 + | carbamate kinase PEPE_0193 228491 - 229582 + | peptidylarginine deiminase-like protein TERM 250 230105 - 230117 + G 76 -4.1 -5.19328 | AGTAAACAGGTTAAA CCGAA TGA TTTGG TTTTTATTCTAACGT PEPE_0194 229595 - 230176 + | transcriptional regulator TERM 251 230433 - 230458 + F 100 -7.7 -5.50723 | TATCGTATTTTGTTA CCAGAAGTT TTTTACTT AACTTCTGG TTTTTATTTTAATCA PEPE_0195 230570 - 233311 + | transcriptional regulator TERM 252 233341 - 233363 + F 89 -7.7 -5.07011 | opp_overlap 233341 AATAGTTTTAAAGAA GCGTGCC TGTTTTTTT GGCACGC TTTTTGCTTTATATA TERM 253 233363 - 233341 - f 74 -7.7 -3.93658 | opp_overlap 233341 AATAGTTTTAAAGAA GCGTGCC TGTTTTTTT GGCACGC TTTTTGCTTTATATA PEPE_0197 234307 - 235092 + | mannose-specific PTS system component IIC PEPE_0198 235107 - 235940 + | mannose-specific PTS system component IID TERM 254 236984 - 237004 + F 100 -12.7 -5.4505 | opp_overlap 236988 AAGTAAAATTTTGAT GATAGAGCA TTG TGCTCTATC TTTTTTATTAGGAGG PEPE_0201 237847 - 238842 + | LacI family transcription regulator TERM 255 238903 - 238850 - f 81 -9 -3.87201 | opp_overlap 238856 238902, overlap 238855 238858 CGAAATAGAATAGAA GTGAATGACTCATAGTGGTCGGAT TAAATT ATCCAACCACTATGAGTCTTTTTA TTTTAACTAAAATAT TERM 256 238898 - 238855 - f 100 -17.7 -3.30218 | opp_overlap 238856, overlap 238850 238858 TAGAATAGAAGTGAA TGACTCATAGTGGTCGGAT TAAATT ATCCAACCACTATGAGTCT TTTTATTTTAACTAA TERM 257 238856 - 238897 + F 100 -19 -5.48213 | opp_overlap 238855 238850 238858 AGAATAGAAGTGAAT GACTCATAGTGGTCGGAT TAAATT ATCCAACCACTATGAGTC TTTTTATTTTAACTA TERM 258 238895 - 238858 - f 100 -18 -2.81627 | opp_overlap 238856, overlap 238855 238850 AATAGAAGTGAATGA CTCATAGTGGTCGGAT TAAATT ATCCAACCACTATGAG TCTTTTTATTTTAAC PEPE_0202 238990 - 240018 + | aldose 1-epimerase PEPE_0203 240309 - 242255 + | Na+/xyloside symporter related transporter TERM 259 242301 - 242271 - T 90 -9.9 -4.13945 | opp_overlap 242271, overlap 242274 AGTTGGATTTTAAAA GGACAATCAATGA TTTAT TCATTGATTGTTC TTTTTTTGCATATTA TERM 260 242271 - 242301 + T 100 -12.1 -5.52909 | opp_overlap 242271 242274 AGTTGGATTTTAAAA GGACAATCAATGA TTTAT TCATTGATTGTTC TTTTTTTGCATATTA TERM 261 242298 - 242274 - T 81 -10.2 -3.09831 | opp_overlap 242271, overlap 242271 TGGATTTTAAAAGGA CAATCAATGA TTTAT TCATTGATTG TTCTTTTTTTGCATA TERM 262 242356 - 242320 - T 87 -8.7 -4.34402 | opp_overlap 242320 TTTTGCATATTAAAA GCCGATGTTGGAGAATT TAA ATCTTTCCAGCATCGGC TTTATCTTAGAAATG TERM 263 242320 - 242356 + T 100 -11.8 -4.19624 | gap 1, opp_overlap 242320 TTTTGCATATTAAAA GCCGATGTTGGAGA-AT TTAA ATCTTTCCAGCATCGGC TTTATCTTAGAAATG PEPE_0204 243322 - 242363 - | Beta-galactosidase PEPE_0205 245186 - 243306 - | Beta-galactosidase TERM 264 245517 - 245527 + G 71 -3.2 -5.09259 | overlap 245521 AATTTTCGACACCAA TCCT GAA AGGG TTTTCTTTTCACCTG PEPE_0206 245467 - 246630 + | galactokinase PEPE_0207 246687 - 247691 + | UDP-galactose 4-epimerase PEPE_0208 247691 - 249151 + | galactose-1-phosphate uridylyltransferase TERM 265 249199 - 249237 + F 100 -11.9 -5.49568 | opp_overlap 249199 TTATTAGTTATTAAA TACGATTCACCTAAGAT GGATA ATCCTAGGTGGGTCGTA TTTTTATTTTAAATT TERM 266 249237 - 249199 - f 83 -9.7 -3.77196 | opp_overlap 249199 TTATTAGTTATTAAA TACGATTCACCTAAGAT GGATA ATCCTAGGTGGGTCGTA TTTTTATTTTAAATT fumC 249343 - 250725 + | fumarate hydratase PEPE_0210 250738 - 252156 + | di- and tricarboxylate transporter TERM 267 252801 - 252777 - g 82 -8.5 -4.30416 | opp_overlap 252774 ATTAGTAAGGTAAAA CGTAATGGCGA AGA TCGCCCTAACG TAGATGTTGTGATGG PEPE_0211 252255 - 252839 + | peptidyl-prolyl cis-trans isomerase TERM 268 252879 - 252841 - T 100 -16.3 -4.85782 | opp_overlap 252841 252847 TCGTTGAAAAATAAA GTAAAACCCTCTGAAAA TTAAT TTTTCGGAGGGTTTTAC TTATTGTGCTAAATA TERM 269 252841 - 252879 + T 100 -18.5 -3.8512 | opp_overlap 252841, overlap 252847 TCGTTGAAAAATAAA GTAAAACCCTCTGAAAA TTAAT TTTTCGGAGGGTTTTAC TTATTGTGCTAAATA TERM 270 252847 - 252873 + T 100 -11.7 -4.59414 | opp_overlap 252841, overlap 252841 AAAAATAAAGTAAAA CCCTCTGAAAA TTAAT TTTTCGGAGGG TTTTACTTATTGTGC PEPE_0212 253734 - 252880 - | alpha-beta hydrolase family esterase PEPE_0213 255067 - 253883 - | major facilitator superfamily permease PEPE_0214 255222 - 255731 + | small molecule binding protein PEPE_0215 255795 - 255953 + | hypothetical protein TERM 271 256025 - 255984 - T 100 -14.8 -2.93991 | opp_overlap 255984 255989, overlap 255989 GGTAATTGAACGACA TAAAAGGATTGGTATGGA GATGAT TCCATATCAATCCTTTTA TTTATGAAAAATTAA TERM 272 255984 - 256025 + T 100 -17.7 -3.87869 | opp_overlap 255984 255989, overlap 255989 GGTAATTGAACGACA TAAAAGGATTGGTATGGAG ATGA TTCCATATCAATCCTTTTA TTTATGAAAAATTAA TERM 273 255989 - 256020 + T 100 -13.2 -4.99043 | opp_overlap 255984 255989, overlap 255984 TTGAACGACATAAAA GGATTGGTATGGAG ATGA TTCCATATCAATCC TTTTATTTATGAAAA TERM 274 256020 - 255989 - T 95 -10.3 -4.614 | opp_overlap 255989 255984, overlap 255984 TTGAACGACATAAAA GGATTGGTATGGA GATGAT TCCATATCAATCC TTTTATTTATGAAAA PEPE_0216 257686 - 256037 - | lipopolysaccharide biosynthesis glycosyltransferase PEPE_0217 257866 - 258150 + | hypothetical protein TERM 275 258246 - 258288 + T 88 -6.7 -5.29385 | opp_overlap 258241 258246 AAAGTAAGACGAAAA TAAAAAACTTCAATC GCGATTAAGCAAA GATTGAAGTTTTTTA TTTTTTACTTAGATT TERM 276 258288 - 258246 - T 78 -6.7 -4.47307 | opp_overlap 258246, overlap 258241 AAAGTAAGACGAAAA TAAAAAACTTCAATC GCGATTAAGCAAA GATTGAAGTTTTTTA TTTTTTACTTAGATT PEPE_0218 259213 - 258293 - | malate dehydrogenase (NAD) PEPE_0219 259656 - 259285 - | hypothetical protein PEPE_0220 260687 - 259668 - | hypothetical protein TERM 277 259852 - 259866 + g 75 -10 -2.96249 | opp_overlap 259847 259850 CGCGCATAGATTACG CCACGT AAG ACGTGG TAATTATTAGTAGCA TERM 278 260801 - 260766 - R 95 -9.2 -4.95806 | gap 1, opp_overlap 260766 AAATTATCATAAAAA GGTCCTGCAATCAAACT ATA AGCT-GATTACAGAACC TTTTTCAAAAAATTG PEPE_0221 261821 - 260817 - | aldose 1-epimerase TERM 279 261229 - 261241 + g 86 -7.7 -4.90917 | TCTGCATCAACTTCT GCGAT TAC ATCGC TTTTTAATTCAATTT PEPE_0222 261970 - 262239 + | SSU ribosomal protein S14P TERM 280 262251 - 262291 + F 85 -3.2 -5.95539 | GTAAAATAATGATGA GTTGTAGCAAAGTAAACC ATATC GGTGGTCTTGGCTACAGC TTTTTTTGTTTCAAA PEPE_0223 262331 - 263314 + | DMT family permease TERM 281 263357 - 263330 - f 100 -10.1 -5.38497 | opp_overlap 263330 ATTTAAATTAAAAAA CGAATTAAAAG ATGATA CTTTTAATTCG TTTTTTTTTAGCTTA TERM 282 263330 - 263357 + F 100 -10.1 -6.15259 | opp_overlap 263330 ATTTAAATTAAAAAA CGAATTAAAAG ATGATA CTTTTAATTCG TTTTTTTTTAGCTTA TERM 283 264216 - 264204 - g 77 -6.2 -4.77986 | opp_overlap 264204 TTAAATATGGAAAAA CCCG CCTAT CGGG TGATTCATTTACACA PEPE_0224 263469 - 265070 + | glycosyltransferase PEPE_0225 265070 - 266569 + | glycosyltransferase TERM 284 266609 - 266573 - T 100 -9.8 -5.46706 | gap 2, opp_overlap 266573 ATCTTAAAATAAAAA TAAGCTGTGG--AAAGTT TTT AACTTTTACCACAGCTTA TTTTTTGTACTTTTT TERM 285 266573 - 266609 + T 100 -9.8 -5.47914 | gap 2, opp_overlap 266573 ATCTTAAAATAAAAA TAAGCTGTGG--AAAGTT TTT AACTTTTACCACAGCTTA TTTTTTGTACTTTTT PEPE_0226 267232 - 266627 - | oxidoreductase TERM 286 267552 - 267541 - g 75 -4.4 -5.11475 | CAAAAAAAGAGAAAA CCAA TGCT TTGG GTAATGCTTTAATTA TERM 287 267803 - 267830 + G 71 -9.2 -2.5655 | opp_overlap 267802, overlap 267802 GTGGGCGGCTAATAG TGCATCGACATC TACA GATGCTGATGCA GTTAGTATGGATGAA PEPE_0227 267390 - 268157 + | hypothetical protein TERM 288 268167 - 268209 + T 95 -8.6 -5.00138 | gap 1, opp_overlap 268167 AACTAATATAAAAAA CGCGAAACAAG-TTGCGGG CCTTGA CCCTTAAATTTGTTTCGCG TTTTTAATTTAAATG TERM 289 268209 - 268167 - T 82 -4.9 -5.50925 | gap 1, opp_overlap 268167 AACTAATATAAAAAA CGCGAAAC-AAGTTGCGGGC CTTG ACCCTTAAATTTGTTTCGCG TTTTTAATTTAAATG PEPE_0228 269036 - 268227 - | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PEPE_0229 270134 - 269091 - | hypothetical protein TERM 290 269847 - 269878 + g 78 -9.4 -3.59627 | opp_overlap 269840 269839 269850, overlap 269840 269849 269850 AAAAGTAGCCGCTAA AAAGCGGTGTGGTC CTTG GACCACATCGCATA TTTGAACACTTTGAT TERM 291 269849 - 269876 + g 89 -12 -3.37283 | opp_overlap 269840 269839 269850, overlap 269840 269847 269850 AAGTAGCCGCTAAAA AGCGGTGTGGTC CTTG GACCACATCGCA TATTTGAACACTTTG TERM 292 269850 - 269875 + g 100 -15.5 -2.61888 | opp_overlap 269840 269839 269850, overlap 269840 269849 269847 AGTAGCCGCTAAAAA GCGGTGTGGTC CTTG GACCACATCGC ATATTTGAACACTTT TERM 293 269875 - 269850 - G 100 -13.3 -4.58663 | opp_overlap 269840 269850 269849 269847, overlap 269840 269839 AGTAGCCGCTAAAAA GCGGTGTGGTC CTTG GACCACATCGC ATATTTGAACACTTT TERM 294 269899 - 269911 + g 70 -6.3 -4.33851 | ACACTTTGATATCGA TTGCT AAA AGCAA TTTGTTCTAACATTT PEPE_0230 270310 - 271401 + | hypothetical protein PEPE_0231 271667 - 272977 + | cellobiose-specific PTS system IIC component TERM 295 273042 - 272995 - f 75 -2.8 -5.55664 | opp_overlap 273001 CGATTACTAAAAAAA TAAAAATGTGGCCAATGAGTTT AGTT AAGCTCATTTCCCGCATTTTTT ATTTATCCAAGAAAC TERM 296 273001 - 273036 + F 100 -6.2 -5.72622 | opp_overlap 272995 CTAAAAAAATAAAAA TGTGGCCAATGAGTTT AGTT AAGCTCATTTCCCGCA TTTTTTATTTATCCA PEPE_0232 273101 - 273559 + | hypothetical protein PEPE_0233 273665 - 274303 + | saccharopine dehydrogenase related protein PEPE_0234 274447 - 275844 + | dipeptidase PepV TERM 297 276103 - 276070 - f 82 -11.1 -2.61718 | opp_overlap 276070, overlap 276069 276068 TAACGCGGAAAAATT CGTCCCTGATCTTAA TTTT TTAAGATTGGGGACG TTTTTATTTCTAATT TERM 298 276070 - 276103 + F 100 -15.5 -5.4182 | opp_overlap 276070 276069 276068 TAACGCGGAAAAATT CGTCCCTGATCTTAA TTTT TTAAGATTGGGGACG TTTTTATTTCTAATT PEPE_0235 276150 - 277403 + | tyrosyl-tRNA synthetase TERM 299 277416 - 277439 + F 100 -10.4 -5.80951 | opp_overlap 277416 TAATAGTATAAAAAA GATTGAGTCA ATTT TGGCTCAATC TTTTTTATTTTCAAT TERM 300 277439 - 277416 - f 100 -8.2 -5.36965 | opp_overlap 277416 TAATAGTATAAAAAA GATTGAGTCA ATTT TGGCTCAATC TTTTTTATTTTCAAT TERM 301 277501 - 277481 - f 70 -6.1 -4.30809 | overlap 277484 TAAGAGCGATGAAAA TAACACCCC CAA GGGATGTGA ATACAGGAATAGTAG TERM 302 277498 - 277484 - f 80 -7.8 -4.26327 | overlap 277481 GAGCGATGAAAATAA CACCCC CAA GGGATG TGAATACAGGAATAG TERM 303 278091 - 278108 + F 82 -8.5 -4.09864 | opp_overlap 278089 278087 278091 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 304 278108 - 278091 - f 74 -8.5 -3.18386 | opp_overlap 278091, overlap 278089 278087 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 305 279441 - 279422 - f 72 -9.2 -2.65808 | opp_overlap 279425 279428, overlap 279419 279434 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 306 279504 - 279522 + F 89 -7.5 -5.00196 | AAGTTTTGTTTAGTT TTGAGAG GTTTA CTCTCAA TTTTGTTCTTTGAAA TERM 307 279681 - 279665 - f 75 -9.5 -2.86185 | opp_overlap 279664, overlap 279662 AAACTCAATTAATCA CTTTACC GTA GGTAAAG ATAGGTTAAGTTAGG TERM 308 279979 - 279960 - f 95 -12.2 -3.66803 | opp_overlap 279959 279958 CGGGAAGAGCCCAAA CCAGGAAG CTTG CTTCCTGG GGTTGTAGGACTGAA TERM 309 282828 - 282848 + F 100 -10.5 -5.76633 | opp_overlap 282828 282831 GCCATGCACATCGAA GAATCTTCC GTT GGAAGGTTC TTTTTTTGTGTCTAA TERM 310 282848 - 282828 - f 70 -8.3 -3.1355 | opp_overlap 282828, overlap 282831 GCCATGCACATCGAA GAATCTTCC GTT GGAAGGTTC TTTTTTTGTGTCTAA TERM 311 283070 - 283029 - f 76 -9.5 -3.09175 | opp_overlap 283033, overlap 283038 AATAAATTTTTAATA CGTAGAGGATGACCACGAT TATT ATCATGGTCATCCTCTTTT TTGTTTTGAAAGTTA TERM 312 283033 - 283066 + F 100 -16.9 -5.79595 | opp_overlap 283029 283038 AATTTTTAATACGTA GAGGATGACCACGAT TATT ATCATGGTCATCCTC TTTTTTGTTTTGAAA TERM 313 283061 - 283038 - f 80 -10.4 -2.66787 | opp_overlap 283033, overlap 283029 TTAATACGTAGAGGA TGACCACGAT TATT ATCATGGTCA TCCTCTTTTTTGTTT PEPE_0240 283174 - 284538 + | purine-cytosine permease related protein TERM 314 285401 - 285380 - g 79 -7.9 -4.20531 | overlap 285381 285383 GATACGTATCCAAAA CGACGCGGG TTAA CCCGCGTTA AGGAACTTTTGGAAA TERM 315 285400 - 285381 - g 74 -9.2 -3.11836 | overlap 285380 285383 ATACGTATCCAAAAC GACGCGGG TTAA CCCGCGTT AAGGAACTTTTGGAA TERM 316 285398 - 285383 - g 83 -11.8 -3.11476 | overlap 285381 285380 ACGTATCCAAAACGA CGCGGG TTAA CCCGCG TTAAGGAACTTTTGG PEPE_0241 284528 - 285760 + | dihydroorotase TERM 317 285766 - 285802 + F 95 -5.2 -5.94713 | gap 1, opp_overlap 285766 285765 CAACTTTTAATTAAG TGGTGCCCGCTAACCAG GCTT TTTGTTAG-GGACACCA TTTTTTTTATGAGAT TERM 318 286671 - 286682 + G 80 -5.8 -5.06816 | overlap 286670 TTGAAACAAAATTTT GGTG AAAC CACC TTTTTATTCAACGCT PEPE_0242 285855 - 287384 + | ABC-type proline/glycine betaine transport system, permease and substrate binding protein PEPE_0243 287384 - 288349 + | ABC-type proline/glycine betaine transport system, ATPase component TERM 319 289290 - 289302 + G 70 -7.7 -3.54638 | opp_overlap 289289 GCTTCCTAAACTGAC TCCAG TAT CTGGA TTTGAAGCCCGTTAT PEPE_0244 288364 - 289698 + | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme PEPE_0245 289755 - 290915 + | Kef-type K+ transport system, membrane component TERM 320 290953 - 290919 - f 100 -14.7 -4.60041 | opp_overlap 290919 ACTCATGCTTAAAAA CTAAACTTAGAATTT TCATC AAATTCTAAGTTTAG TTTTTTTATTTAGCA TERM 321 290919 - 290953 + F 100 -14.7 -5.95539 | opp_overlap 290919 ACTCATGCTTAAAAA CTAAACTTAGAATTT TCATC AAATTCTAAGTTTAG TTTTTTTATTTAGCA TERM 322 291157 - 291131 - g 70 -5.1 -4.62872 | overlap 291133 ATGAACTCGGAAAAA CAGCTGTAGCA ATTTA TGCTAAAGCGG ATGAATTTTCTATGC TERM 323 293057 - 293041 - g 73 -6.5 -4.3208 | overlap 293042 CGTGATAATGGAAAA GTGGCTG AAG CAGCCAT GGCATATACTGGCGA TERM 324 293056 - 293042 - g 76 -10 -3.18766 | overlap 293041 GTGATAATGGAAAAG TGGCTG AAG CAGCCA TGGCATATACTGGCG PEPE_0246 291055 - 294480 + | pyruvate carboxylase TERM 325 294572 - 294558 - g 95 -5.6 -5.81412 | opp_overlap 294568 CTGAGGCAAAAAAAA TGCAGG CGG CCGGCA TCGACGTTGTTAATT PEPE_0247 294485 - 295660 + | aminotransferase TERM 326 295712 - 295666 - T 100 -13.3 -2.97613 | opp_overlap 295667 295678, overlap 295678 TATGAATTAATTAGA GCTATATAAAAAGCAGATACC TAACC GGTACCTGCTTTTTATATGGT TTTATAACATAGGTA TERM 327 295667 - 295711 + T 100 -16.8 -4.40358 | opp_overlap 295666 295678, overlap 295678 ATGAATTAATTAGAG CTATATAAAAAGCAGATACC TAACC GGTACCTGCTTTTTATATGG TTTTATAACATAGGT TERM 328 295678 - 295700 + T 89 -7.7 -5.07941 | opp_overlap 295678 295666, overlap 295667 AGAGCTATATAAAAA GCAGATACC TAACC GGTACCTGC TTTTTATATGGTTTT TERM 329 295700 - 295678 - T 100 -9.9 -4.99638 | opp_overlap 295667 295678, overlap 295666 AGAGCTATATAAAAA GCAGATACC TAACC GGTACCTGC TTTTTATATGGTTTT PEPE_0248 296439 - 295714 - | hypothetical protein TERM 330 296016 - 296006 - G 71 -4 -5.00616 | opp_overlap 295995 296006 GCTGCCGTGAAAAAA TCAA GGA TTGA TTTCGAGATTAAAAT TERM 331 296658 - 296634 - g 78 -10.1 -3.22728 | opp_overlap 296641, overlap 296632 296629 296640 296641 AAACGAAAAACTACA GTAAAACTGCG GAA CGCATTTTTAC AACCCAGGCAACAGT TERM 332 296641 - 296651 + G 77 -6.8 -4.56597 | opp_overlap 296632 296629 296641 296640 296634 AAACTACAGTAAAAC TGCG GAA CGCA TTTTTACAACCCAGG PEPE_0249 296579 - 297463 + | LysR family transcriptional regulator TERM 333 297459 - 297513 + F 100 -19 -4.0274 | opp_overlap 297465 297471, overlap 297465 297471 CAGAAACTCGATTAG AATAAACTAAAACCCCATATATTCCA TAA TGGAATGTATGGGGTTTTAGTTTGAA TTGTTTCGTCGTCAA TERM 334 297507 - 297465 - f 100 -22.4 -4.35483 | opp_overlap 297459 297465 297471, overlap 297471 CTCGATTAGAATAAA CTAAAACCCCATATATTCCA TAA TGGAATGTATGGGGTTTTAG TTTGAATTGTTTCGT TERM 335 297465 - 297507 + F 100 -24.6 -3.90038 | opp_overlap 297465 297471, overlap 297459 297471 CTCGATTAGAATAAA CTAAAACCCCATATATTCCA TAA TGGAATGTATGGGGTTTTAG TTTGAATTGTTTCGT TERM 336 297501 - 297471 - f 100 -15.6 -4.70353 | opp_overlap 297465 297459 297471, overlap 297465 TAGAATAAACTAAAA CCCCATATATTCCA TAA TGGAATGTATGGGG TTTTAGTTTGAATTG TERM 337 297471 - 297501 + F 100 -17.8 -4.5852 | opp_overlap 297471 297465, overlap 297465 297459 TAGAATAAACTAAAA CCCCATATATTCCA TAA TGGAATGTATGGGG TTTTAGTTTGAATTG PEPE_0250 297576 - 299051 + | 3-polyprenyl-4-hydroxybenzoate decarboxylase related decarboxylase PEPE_0251 299073 - 299669 + | 3-polyprenyl-4-hydroxybenzoate decarboxylase PEPE_0252 299641 - 300084 + | hypothetical protein TERM 338 300096 - 300128 + F 95 -9.3 -5.28826 | opp_overlap 300096 300091 ATAATTAAAATAGAA TCCTCAGCATTGT TTGTTTT GCAATGTTGAGGA TTTTTTATAAGATTT PEPE_0253 300239 - 301174 + | NADPH:quinone reductase related Zn-dependent oxidoreductase TERM 339 301194 - 301219 + F 86 -4.1 -5.72207 | opp_overlap 301194 TGAAAATGTAAAAAG TCATGACAT TGTTGCTT GTGTCATGA TTTTTTTAGTTTAAA TERM 340 301420 - 301432 + G 74 -5.5 -4.78107 | overlap 301419 TTTGATTTCTTTTAT GGTGG GAA CCATC TTTTTGATAGTAATC PEPE_0254 301301 - 302239 + | hypothetical protein TERM 341 302275 - 302241 - T 90 -11 -3.81027 | gap 1, opp_overlap 302241 302248, overlap 302248 TTGAAGTAATGTAAA CA-AAAAACTCGACG GTTATT CGTCGAGTTTTTGTG ATTTATGAGGAGTGA TERM 342 302241 - 302275 + T 88 -11.7 -2.91924 | gap 1, opp_overlap 302241 302248, overlap 302248 TTGAAGTAATGTAAA CA-AAAAACTCGACGG TTAT TCGTCGAGTTTTTGTG ATTTATGAGGAGTGA TERM 343 302248 - 302267 + T 100 -10 -5.06735 | opp_overlap 302241 302248, overlap 302241 AATGTAAACAAAAAA CTCGACGG TTAT TCGTCGAG TTTTTGTGATTTATG TERM 344 302267 - 302248 - T 100 -9.3 -5.67283 | opp_overlap 302248 302241, overlap 302241 AATGTAAACAAAAAA CTCGACG GTTATT CGTCGAG TTTTTGTGATTTATG PEPE_0255 304559 - 302256 - | superfamily I DNA/RNA helicase TERM 345 304846 - 304873 + H 100 -10.8 -5.4251 | TACCGCGATTTTTCG TCCTATTATTCA TTTT TGAATAGTAGGA TTTTTTATATCTGGA PEPE_0256 304896 - 305924 + | tryptophanyl-tRNA synthetase II TERM 346 305934 - 305956 + F 100 -9.2 -5.45652 | opp_overlap 305934 CTTTAATCGTAAAAG CCATGCTTCT AAA AGAAGTGTGG TTTTTTATTAAGGAT PEPE_0257 306083 - 307012 + | exopolyphosphatase PEPE_0258 307018 - 308250 + | 3-hydroxy-3-methylglutaryl-coenzyme A reductase PEPE_0259 308237 - 309193 + | hypothetical protein TERM 347 309202 - 309231 + T 90 -5.9 -5.57396 | gap 1, opp_overlap 309202 TAGATAAAATAAAAA TCCTG-GACTAAAG TAA TTTTAGTTACAGGA TTTTTTGTTAGTTAT TERM 348 309231 - 309202 - T 77 -3 -5.58522 | gap 1, opp_overlap 309202 TAGATAAAATAAAAA TCCTG-GACTAAA GTAAT TTTAGTTACAGGA TTTTTTGTTAGTTAT PEPE_0260 309650 - 309243 - | hypothetical protein PEPE_0261 310543 - 309719 - | XRE family transcriptional regulator PEPE_0262 310796 - 310608 - | putative stress-responsive transcriptional regulator PEPE_0263 310889 - 310948 + | hypothetical protein PEPE_0264 310941 - 311606 + | hypothetical protein TERM 349 311619 - 311649 + F 100 -7.1 -5.65513 | gap 1, opp_overlap 311617 311619 TAAAAATAAATTAGA CTGGAA-TCAAATC AGAT GATTTGAATTTCAG TTTTTTTAATTAATG TERM 350 312206 - 312222 + G 72 -7.9 -3.84514 | overlap 312211 GATGAGCCGTTTGAC GGCAACC AAG GGATGCC TTTGGTACTTCAAGT PEPE_0265 311675 - 312523 + | hypothetical protein TERM 351 314113 - 314127 + G 70 -7.2 -3.76759 | opp_overlap 314107, overlap 314107 314106 GTTAACCAACTTGAA CTTCAA GGT TTGAAG TTTGGTGAAATTCCT TERM 352 314331 - 314321 - g 78 -5.4 -5.1471 | ACCAGAAAAAAGAAA TTCG GAT CGAA GCTTTTGATAAGGTA PEPE_0266 312622 - 314643 + | methionyl-tRNA synthetase TERM 353 314661 - 314695 + F 82 -6.5 -5.0916 | gap 1 AGATTTAACACAATG GGACTGGTGATGAAAC AGGT GTTTTGTC-CCAGCCC TTTTTATATTCAAGG PEPE_0267 314719 - 315501 + | Mg-dependent DNase TERM 354 315559 - 315589 + G 95 -12.6 -3.54475 | opp_overlap 315551 CAACCTAGCTGTCAA CGCTGATACCTTGG AAA CTAGGGGATCAGCG TTATCTGATGAAACC PEPE_0268 315488 - 316048 + | ribonuclease M5 TERM 355 316831 - 316816 - g 72 -6.2 -4.40221 | opp_overlap 316816 AAATCAAAGCTAAAA TCCAAA ATGT TTTGGA TGATTTAGGTATTGA PEPE_0269 316041 - 316934 + | dimethyladenosine transferase PEPE_0270 317061 - 317363 + | hypothetical protein PEPE_0271 317481 - 318332 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase PEPE_0272 318342 - 318854 + | transcriptional regulator TERM 356 318870 - 318881 + F 72 -3.6 -5.24531 | opp_overlap 318868 318863 318862, overlap 318880 TTTTAAATGAAAAGA GCGG GGAC TCGC TTTTTTCTAAGGCAT PEPE_0273 318963 - 319436 + | universal stress protein UspA-like nucleotide-binding protein PEPE_0274 319465 - 319914 + | universal stress protein UspA-like nucleotide-binding protein TERM 357 319941 - 319963 + F 100 -8.4 -5.69262 | opp_overlap 319941 CATTCTTATCAGAAA GAGACCGTTT ACA GAACGGCCTC TTTTTATTTTTCTCA TERM 358 319963 - 319941 - f 90 -9.9 -3.96624 | opp_overlap 319941 CATTCTTATCAGAAA GAGACCGTT TACAG AACGGCCTC TTTTTATTTTTCTCA PEPE_0275 320054 - 321493 + | major facilitator superfamily permease TERM 359 321539 - 321502 - T 100 -13.7 -5.85425 | gap 1, opp_overlap 321502 CAAATAAATAAAAAA GATGAAC-GAGAATTCTG AAT CAGAAATCTCAGTTCATC TTTTTTTGTTGAGTA TERM 360 321502 - 321539 + T 100 -13.7 -5.8187 | gap 1, opp_overlap 321502 CAAATAAATAAAAAA GATGAAC-GAGAATTCTG AAT CAGAAATCTCAGTTCATC TTTTTTTGTTGAGTA PEPE_0276 322725 - 321556 - | 1,3-propanediol dehydrogenase TERM 361 322877 - 322905 + r 100 -13.3 -3.4617 | opp_overlap 322877, overlap 322882 AATATGAACAAAAAA GCAAACAAACTCC TAT GGAATTTGTTTGC TTAGTTAATATTAAT TERM 362 322905 - 322877 - R 100 -15.5 -5.54885 | opp_overlap 322877 322882 AATATGAACAAAAAA GCAAACAAACTCC TAT GGAATTTGTTTGC TTAGTTAATATTAAT PEPE_0277 323674 - 322916 - | ABC-type uncharacterized transport system, ATPase component PEPE_0278 324587 - 323676 - | ribose/xylose/arabinose/galactoside ABC-type transporter permease PEPE_0279 325579 - 324584 - | ABC-type uncharacterized transport system, periplasmic component TERM 363 325636 - 325616 - R 100 -11.1 -5.88565 | opp_overlap 325635 TTTATAATAAAAAAA GGCAAGCCC ATG GGGTTTGCC TAAAAAAAAGCCCAC TERM 364 325678 - 325646 - R 100 -12.8 -5.75342 | opp_overlap 325635 325646 TTTGCCTAAAAAAAA GCCCACATGGATGT GTATA AAATCCATGCGGGC TTGTTGTTATCGTTT TERM 365 325646 - 325678 + r 91 -10.6 -4.07515 | opp_overlap 325646, overlap 325635 TTTGCCTAAAAAAAA GCCCACATGGATGT GTATA AAATCCATGCGGGC TTGTTGTTATCGTTT TERM 366 325718 - 325744 + r 89 -11.7 -3.05463 | opp_overlap 325709 325706 325720 325722, overlap 325716 325720 325722 AAATGAGCCGGCACA GATACGATCTG TCATT CAGGTCGTATC TTGCCTAGACAAAAT TERM 367 325720 - 325742 + r 72 -8.5 -3.08679 | opp_overlap 325720 325709 325706 325722, overlap 325716 325718 325722 ATGAGCCGGCACAGA TACGATCTG TCATT CAGGTCGTA TCTTGCCTAGACAAA PEPE_0280 326610 - 325915 - | GntR family transcriptional regulator PEPE_0281 326777 - 327088 + | cellobiose-specific PTS system IIB component PEPE_0282 327168 - 327491 + | cellobiose-specific PTS system IIA component PEPE_0283 327507 - 328952 + | Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase PEPE_0284 328995 - 329750 + | transcriptional regulator TERM 368 329791 - 329756 - f 73 -7.8 -3.59293 | opp_overlap 329756, overlap 329752 TGAAATTTAAATTAA TGAAACGATAATCG GTACTTGA CGATTATTGTTTCA TTTTTTTGTTCTAAA TERM 369 329756 - 329791 + F 100 -10 -5.88565 | opp_overlap 329756 329752 TGAAATTTAAATTAA TGAAACGATAATCG GTACTTGA CGATTATTGTTTCA TTTTTTTGTTCTAAA PEPE_0285 329881 - 331221 + | NAD(FAD)-dependent dehydrogenase PEPE_0286 331253 - 332032 + | acetoin reductase TERM 370 332071 - 332043 - T 100 -9 -6.11229 | opp_overlap 332043 ATTAAAATAAAAAAA CTTTTGAAACAG GGGAA CTGTTTCGAAAG TTTTTTATTTTTTAA TERM 371 332043 - 332071 + T 100 -11.2 -6.04324 | opp_overlap 332043 ATTAAAATAAAAAAA CTTTTGAAACAG GGGAA CTGTTTCGAAAG TTTTTTATTTTTTAA PEPE_0287 332660 - 332076 - | Uracil-DNA glycosylase TERM 372 332299 - 332326 + g 89 -7.8 -5.16237 | opp_overlap 332300, overlap 332300 332324 CCGATTAACAGAGTA AGCTGGATGTTA GGCA TAATATCCAGCA TTTTTTGATGCCATT TERM 373 332300 - 332325 + g 83 -11.3 -3.68658 | opp_overlap 332300, overlap 332299 332324 CGATTAACAGAGTAA GCTGGATGTTA GGCA TAATATCCAGC ATTTTTTGATGCCAT TERM 374 332325 - 332300 - G 74 -9.1 -3.38951 | opp_overlap 332300 332299 332324 CGATTAACAGAGTAA GCTGGATGTTA GGCA TAATATCCAGC ATTTTTTGATGCCAT TERM 375 332754 - 332729 - R 74 -4.2 -5.24989 | gap 1, opp_overlap 332729 TGAGATAGTAAAAAA CAAACATC-AT TAAAT ATAGATGTTTG TTTTTTTGAAGTAAT TERM 376 332729 - 332754 + r 77 -4.2 -5.44721 | gap 1, opp_overlap 332729 TGAGATAGTAAAAAA CAAACATC-AT TAAAT ATAGATGTTTG TTTTTTTGAAGTAAT PEPE_0288 333956 - 332784 - | acetyltransferase TERM 377 332960 - 332987 + g 75 -7.8 -4.19704 | overlap 332950 TATGAGTATCTAATG GTACGTTTGATT TTTG AACCGAACGTAC TTTTCCGTCAAATTC TERM 378 333776 - 333766 - G 79 -4 -5.40072 | opp_overlap 333758 TTGGTTCCAAAAAAA TTTG TTT CAAA AGGAATACTTAAAAT TERM 379 334525 - 334502 - g 100 -12.6 -4.5774 | TATCAACAATGAAAA CCTTAGCTAA CCAT TTAGCTAAGG AATTAGGGAAAAAGG PEPE_0289 334099 - 334986 + | ABC-type metal ion transport system, periplasmic component/surface adhesin PEPE_0290 334986 - 335666 + | ABC-type Mn/Zn transport system, ATPase component TERM 380 335997 - 335982 - g 70 -2.6 -5.07486 | gap 1, opp_overlap 335996 GATTTCCAATAAAAA TGTTAGC TAT GCTA-CA AATATTTTGTTTGGT PEPE_0291 335659 - 336447 + | ABC-type Mn2+/Zn2+ transport system, permease component TERM 381 336494 - 336439 - f 75 -2.4 -5.67967 | opp_overlap 336445 336455, overlap 336445 336455 ATGATTATAAAAAAA GATAAT-TAATTAAAAAGACTGAATC CTAAAC GATTCAGTCTTTTTA-TTATATTTTT GGTCTAAATCCGAAC TERM 382 336487 - 336445 - f 89 -11.8 -3.16271 | gap 1, opp_overlap 336445 336455, overlap 336439 336455 ATAAAAAAAGATAAT TAATTAAAAAGACTGAATC CTAAAC GATTCAGTCTTTTTA-TTA TATTTTTGGTCTAAA TERM 383 336445 - 336487 + F 100 -11.8 -4.02302 | gap 1, opp_overlap 336445 336439 336455, overlap 336455 ATAAAAAAAGATAAT TAATTAAAAAGACTGAATC CTAAAC GATTCAGTCTTTTTA-TTA TATTTTTGGTCTAAA TERM 384 336478 - 336455 - f 100 -9.7 -4.9445 | opp_overlap 336445 336455, overlap 336445 336439 ATAATTAATTAAAAA GACTGAATC CTAAAC GATTCAGTC TTTTTATTATATTTT TERM 385 336455 - 336478 + F 100 -9.7 -5.35365 | opp_overlap 336455 336445 336439, overlap 336445 ATAATTAATTAAAAA GACTGAATC CTAAAC GATTCAGTC TTTTTATTATATTTT PEPE_0292 336603 - 337439 + | purine operon repressor TERM 386 337745 - 337755 + G 75 -6.8 -4.42806 | ACCATGATCGTTAGT GGTG ATA CACC TTTATTTACAGCTAA PEPE_0293 337445 - 338848 + | UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase TERM 387 338909 - 338929 + T 81 -3.9 -5.66989 | overlap 338873 AAATTCTAACTTTTA GGGTGGCTA TCA TGGCAATCC TTTTTTTGGTATTTA PEPE_0294 339525 - 338953 - | Rossmann fold nucleotide-binding protein PEPE_0295 339882 - 340862 + | phosphoribosylpyrophosphate synthetase TERM 388 340925 - 340901 - f 76 -7.2 -4.3129 | opp_overlap 340901, overlap 340904 TAGTGATCATTAAAA GATCTCGAAA TCTAT TTTCGAGGTC TTTTTTGGTAGTAAA TERM 389 340901 - 340925 + F 100 -9.4 -5.1861 | opp_overlap 340901 340904 TAGTGATCATTAAAA GATCTCGAAA TCTAT TTTCGAGGTC TTTTTTGGTAGTAAA PEPE_0296 341087 - 342148 + | hypothetical protein TERM 390 342154 - 342175 + T 100 -10.2 -5.63517 | opp_overlap 342152 GGAACAATAATATTG CAGGAAGC GATTGA GCTTCCTG TTTTTTATTTGAGAG PEPE_0297 343252 - 342914 - | hypothetical protein PEPE_0298 343743 - 343324 - | hypothetical protein PEPE_0299 343903 - 344553 + | glycerol uptake facilitator related permease (major Intrinsic protein family) TERM 391 344619 - 344571 - T 81 -4 -5.53288 | opp_overlap 344571 GCTAATCTAAAAAAA TAAGGATTAACGCTGGGCGA ATAATTTCG TCTCAAAACGTTAATCCTTA TTTTTTTCGCGTATT TERM 392 344571 - 344619 + T 76 -3.5 -5.46629 | gap 3, opp_overlap 344571 GCTAATCTAAAAAAA TAAGGATTAACG--CTG-GGCGAA TAAT TTCGTCTCAAAACGTTAATCCTTA TTTTTTTCGCGTATT PEPE_0300 345369 - 344617 - | Kef-type K+ transporter NAD-binding component PEPE_0301 345478 - 346449 + | asparaginase PEPE_0302 346504 - 348417 + | neutral endopeptidase TERM 393 348457 - 348434 - f 100 -9.6 -5.05577 | opp_overlap 348434 AAATCAAACTAAAAA GACGATTGCT AATT AGCAGTCGTC TTTTTTAGTTATTTC TERM 394 348434 - 348457 + F 100 -11.8 -5.4148 | opp_overlap 348434 AAATCAAACTAAAAA GACGATTGCT AATT AGCAGTCGTC TTTTTTAGTTATTTC TERM 395 348644 - 348622 - g 72 -9.4 -2.74782 | ACAAATCGCTAAGTA TTTTCAATTT GAT AAATTGAAAA CAAACTATAAAACAG PEPE_0303 348602 - 349909 + | xanthine/uracil/vitamin C permease TERM 396 349988 - 349998 + F 81 -3.2 -5.75822 | AAAAATTCAACCCTT GGAC ATA GTTC TTTTTTTAATTTATG PEPE_0304 350024 - 350842 + | RNase HI PEPE_0305 351347 - 350829 - | hypothetical protein TERM 397 351413 - 351451 + r 100 -15.4 -5.3671 | opp_overlap 351416, overlap 351416 AAAAAACTGAATGAA AAAGGGACGATGGCATTC ATA GCATGTCATCGTCCCTTA TTTTTTGATTATCTT TERM 398 351448 - 351416 - R 100 -14.9 -4.90917 | opp_overlap 351413 351416 AAACTGAATGAAAAA GGGACGATGGCATTC ATA GCATGTCATCGTCCC TTATTTTTTGATTAT TERM 399 351416 - 351448 + r 100 -17.1 -4.73828 | opp_overlap 351416, overlap 351413 AAACTGAATGAAAAA GGGACGATGGCATTC ATA GCATGTCATCGTCCC TTATTTTTTGATTAT PEPE_0306 351651 - 351460 - | hypothetical protein PEPE_0307 352608 - 351754 - | transcriptional regulator TERM 400 353100 - 353116 + G 70 -7.3 -3.85698 | overlap 353102 TCTAGCAATCCTAGT TGCCAGT GGT ACTGGTA TTTGTGGGGCAGCAG PEPE_0308 352723 - 353748 + | hypothetical protein TERM 401 353761 - 353802 + T 100 -8.9 -5.54894 | opp_overlap 353761 TAAAAAAATAAAAAA CGAATTGATGGATTTGC GAAAAGGA GCAGAATCATCAATTCG TTTTTTTAATGACTT TERM 402 353802 - 353761 - T 95 -4.8 -6.12458 | opp_overlap 353761 TAAAAAAATAAAAAA CGAATTGATGGATT-TGC GAAAAGGA GCAGAAT-CATCAATTCG TTTTTTTAATGACTT PEPE_0309 354743 - 353808 - | AEC family permease TERM 403 354305 - 354268 - G 71 -6.5 -4.13304 | gap 1, opp_overlap 354278 AAAGCATCTTTAAAA TTCATTTGAACGTGATTG GAA CTATCACGTTGAA-TGAA GTAGACGCCTAGTGT PEPE_0310 354837 - 355166 + | hypothetical protein PEPE_0311 355183 - 356004 + | HAD superfamily hydrolase TERM 404 356147 - 356204 + F 100 -11.4 -5.60993 | opp_overlap 356144 CAAGCTAGCAGAGTC GCCATCAACAGG-TGGAGTGGACGCGGT TAGC GCCG-GCCCATACCAACTTGTTGGTGGC TTTTTTTGTACCCAA TERM 405 356700 - 356714 + F 75 -5 -4.95876 | opp_overlap 356700 AAAAGATTCAAGTGA TTGGAG TTG CTTCAA TTTTTAGTTATGGTT TERM 406 356990 - 357026 + F 100 -11 -5.67967 | gap 1, opp_overlap 356994 GAATCGGCTTTTTAA GCTACTC-CCAAGCGAG ACGA TTCGATTGGTGAGTAGC TTTTTTTATAATAAT pyrB 357057 - 357983 + | aspartate carbamoyltransferase catalytic subunit TERM 407 359163 - 359147 - g 71 -6.6 -4.14345 | GAATATGAAATTAAA GAAGCA GATTT TGCTTC AAAGGGAATCAATTC PEPE_0314 357983 - 359260 + | dihydroorotase PEPE_0315 359267 - 360352 + | carbamoyl-phosphate synthase small subunit PEPE_0316 360355 - 363528 + | carbamoyl-phosphate synthase large subunit PEPE_0317 363540 - 364454 + | dihydroorotate dehydrogenase 1B PEPE_0318 364469 - 365857 + | succinate dehydrogenase/fumarate reductase, flavoprotein subunit TERM 408 365896 - 365936 + F 100 -9.9 -5.02074 | TATAACCAAATTAAA GGTAAGATTTTGTTAAATG TTC CAATTGACAAGGTCTTGCC TTTTTTAGACAATCA TERM 409 366731 - 366743 + G 76 -4.9 -5.04601 | opp_overlap 366731 366729, overlap 366737 CTAGTTGAAAAAGGA TATCT GGG AGATA TTTTTCCTTTGTACG TERM 410 366816 - 366802 - g 81 -7.2 -4.74132 | ATATGGCACGAAAAA TCTGAA TAC TTCAGA AGCTTTGATTACAGT PEPE_0319 366029 - 367156 + | hypothetical protein TERM 411 367224 - 367237 + G 73 -8.1 -3.54638 | opp_overlap 367218 CATATATCACCTGCT GCCGT TGCA ACGGC TTTGGCAGCGATTAT TERM 412 367829 - 367817 - g 71 -3.4 -5.02606 | TAGTAAACAACAAAA TGCT CCTTT AGCA CTAAGTTTTGGAGTC PEPE_0320 367170 - 368657 + | hypothetical protein TERM 413 369237 - 369226 - g 73 -4.4 -4.93547 | GTAATTAATCAAAAA CAAG GTTA CTTG CCTTTCTTCAACAAT TERM 414 369911 - 369899 - g 70 -4.9 -4.68601 | opp_overlap 369899 ATTTAAAAGAACAAA TTCAA GCG TTGAA CTTTGAATGGCAAGC TERM 415 369961 - 369977 + G 71 -6.6 -4.11216 | TCAAAAATTGATTTT GCAAGT TCATC ACTTGC TTTTCAAAATGGACA PEPE_0321 368650 - 370200 + | hypothetical protein TERM 416 371029 - 371001 - g 91 -12.5 -3.03124 | opp_overlap 371005, overlap 371005 GGTTACTTGGGAACA GGAACCACAAACC TTA GATGTGTGGTTCC ATCAGCGAACGCGCT PEPE_0322 370222 - 371466 + | glycosyltransferase TERM 417 372755 - 372738 - g 76 -7.1 -4.29227 | TGAAGGATCAAGAAA TTTCAGA TAAC TCTGAAA CCCCTTGGGCAGAAG TERM 418 372823 - 372808 - g 74 -6.2 -4.61566 | opp_overlap 372808, overlap 372803 GGTTAAATCAGAAAA GAGTAA CGAT TTACTC TTTACCAACTATCCC PEPE_0323 371498 - 373531 + | glycosyl transferase PEPE_0324 373515 - 374369 + | GGDEF domain-containing protein TERM 419 374380 - 374420 + T 95 -8.5 -5.06816 | opp_overlap 374384, overlap 374384 374387 TTTAGAGCAGCATAA AAAAGAACCTTAACTTC AGAAAAA GAAGTTAAGGCTCTTTA TTTTTATTAGCAAAT TERM 420 374384 - 374416 + T 95 -9.3 -5.05606 | opp_overlap 374384, overlap 374380 374387 GAGCAGCATAAAAAA GAACCTTAACTTC AGAAAAA GAAGTTAAGGCTC TTTATTTTTATTAGC TERM 421 374416 - 374384 - T 100 -11.5 -5.32882 | opp_overlap 374384 374380 374387 GAGCAGCATAAAAAA GAACCTTAACTTC AGAAAAA GAAGTTAAGGCTC TTTATTTTTATTAGC TERM 422 374387 - 374413 + T 76 -9.6 -3.05433 | opp_overlap 374384, overlap 374384 374380 CAGCATAAAAAAGAA CCTTAACTTC AGAAAAA GAAGTTAAGG CTCTTTATTTTTATT PEPE_0325 374834 - 374427 - | hypothetical protein PEPE_0326 375009 - 375389 + | lactoylglutathione lyase related lyase TERM 423 375402 - 375427 + F 100 -9.2 -5.71712 | opp_overlap 375400 TGATACCAAGGCAGA GTTACGATAA TTAATT TTATCGTAAC TTTTTTTGTATGAAA TERM 424 375641 - 375631 - g 72 -5.4 -4.63527 | opp_overlap 375631 CTACTAGCGGAAAAA TCGT ATG ACGA TATTAGCATTAATGA PEPE_0327 375538 - 376104 + | TetR family transcriptional regulator TERM 425 376786 - 376814 + G 74 -9 -3.67792 | ACTGTTGGACTATCT TTCATCGTTGCT TTATC AGCAGTGATGAA TTTAGCTAAATATAC PEPE_0328 376153 - 378810 + | hypothetical protein TERM 426 378818 - 378843 + F 100 -8.3 -5.38326 | opp_overlap 378814 378818 AAAATTAATCATAAA GTCGTAACTCT ATTT GGGGTTACGGC TTTTTATTTGCTTAC PEPE_0329 378913 - 379536 + | putative NADH-flavin reductase TERM 427 379542 - 379582 + T 100 -12.8 -5.07971 | gap 1, opp_overlap 379542 AGTTTGGTAAAAAAA GATGGAATCATGCC-CGAT TTTA AACGAGGTATGATTCCATC TTTTTAATTGTTTTC TERM 428 379582 - 379542 - T 100 -11.3 -5.40474 | opp_overlap 379542 AGTTTGGTAAAAAAA GATGGAATCATGCCCGATT TTA AACGAGGTATGATTCCATC TTTTTAATTGTTTTC PEPE_0330 379835 - 379605 - | hypothetical protein PEPE_0331 380651 - 379911 - | peptide ABC transporter ATPase TERM 429 379984 - 380002 + g 77 -6.8 -4.58773 | TCAAAATCGGCCTGT TTACGTTT GGC AGACGTAA TTTTAATTTCATGGC TERM 430 380324 - 380338 + g 83 -5.6 -5.41746 | overlap 380326 AAAGTGGTTCGGCAC GGGCAG TGG CTGCGC TTTTTTTAACCCCTT PEPE_0332 381682 - 380672 - | ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component PEPE_0333 382451 - 381669 - | ABC-type nitrate/sulfonate/bicarbonate transport system, permease component PEPE_0334 382710 - 382414 - | hypothetical protein TERM 431 382751 - 382769 + H 72 -8.8 -3.10255 | opp_overlap 382751 382766 TTAGGTACAAAAAAA GCCGGCTT AAA AAGCCAGC TTCACTGCATCTTGT TERM 432 382769 - 382751 - H 100 -11 -5.64274 | opp_overlap 382751, overlap 382766 TTAGGTACAAAAAAA GCCGGCTT AAA AAGCCAGC TTCACTGCATCTTGT PEPE_0335 383043 - 383753 + | glucosamine-6-phosphate isomerase TERM 433 383767 - 383793 + F 100 -13.2 -5.80364 | opp_overlap 383764 AATTTAAAATATTCA GCCTAACATAAA GTC TTTGTGTTAGGC TTTTTTTATTGCAGT PEPE_0336 384056 - 385255 + | acetate kinase eutD 385259 - 386230 + | phosphotransacetylase TERM 434 386241 - 386267 + T 100 -12.4 -5.93809 | opp_overlap 386241 TTTAGAAAATAAAAA TAGGAATCGGAA TTT TTCCGACTCCTA TTTTTTTTGTGCACA TERM 435 386267 - 386241 - T 100 -14.6 -5.54907 | opp_overlap 386241 TTTAGAAAATAAAAA TAGGAATCGGAA TTT TTCCGACTCCTA TTTTTTTTGTGCACA PEPE_0338 386705 - 386265 - | Fe2+/Zn2+ uptake regulation protein TERM 436 388051 - 388026 - g 76 -4.8 -5.10154 | gap 1, opp_overlap 388026 AGCCAAAATCAAAAA TCGG-CACGTT TAAAT AACATGGCCGA TATTTTTATGGCTCA PEPE_0339 386865 - 388286 + | major facilitator superfamily permease TERM 437 388370 - 388419 + G 70 -3 -5.06451 | overlap 388371 388375 AGCGGTTCAACGATT CGGAAGTTGTAAATAATTCGAT TGTTTT AGCGTATTATTTACTACTTTCA TTTTTTCCAATGGTA TERM 438 388427 - 388461 + G 81 -10.2 -3.83502 | overlap 388430 TACTTTCATTTTTTC CAATGGTAATGTTGAT GGG ATCGTTATTACCATTG TTTGATATCAAAGTG PEPE_0340 388300 - 389202 + | ribonuclease BN-like family protein TERM 439 389244 - 389200 - T 100 -8.1 -5.48054 | gap 1, opp_overlap 389205 ATTAAAATCAAAAAA TAAAAGTTATCCAACAGTGG AATTAA CCGCTGT-GGATAACTTTTT TATTTTTCTGAATAA TERM 440 389205 - 389239 + T 100 -10.2 -5.98675 | gap 1, opp_overlap 389200 AATCAAAAAATAAAA GTTATCCAACAGTGG AATTAA CCGCTGT-GGATAAC TTTTTTATTTTTCTG PEPE_0341 389708 - 389244 - | hypothetical protein PEPE_0342 390563 - 389784 - | protein tyrosine phosphatase TERM 441 390655 - 390672 + r 85 -8.4 -4.58395 | opp_overlap 390655 GAAGGTAAGTAAAAA GACGCC GATTAA GGCGTC TTTTTGGGGAGTAGG TERM 442 390672 - 390655 - R 90 -8.4 -4.90013 | opp_overlap 390655 GAAGGTAAGTAAAAA GACGCC GATTAA GGCGTC TTTTTGGGGAGTAGG TERM 443 390777 - 390737 - R 72 -5 -4.84492 | gap 1, opp_overlap 390738, overlap 390738 390747 GTAATCAGAATAAAA GTTTA-ACGAATGAGGAAA TTTC TTTCCTCATCCATGTAAAT CATATTAAAGCATAA TERM 444 390776 - 390738 - R 76 -8.5 -3.49611 | gap 1, opp_overlap 390738, overlap 390737 390747 TAATCAGAATAAAAG TTTA-ACGAATGAGGAAA TTTC TTTCCTCATCCATGTAAA TCATATTAAAGCATA TERM 445 390766 - 390747 - R 80 -9.4 -3.40141 | opp_overlap 390738, overlap 390738 390737 TAAAAGTTTAACGAA TGAGGAAA TTTC TTTCCTCA TCCATGTAAATCATA PEPE_0343 391652 - 390861 - | protein tyrosine phosphatase PEPE_0344 392173 - 391667 - | hypothetical protein TERM 446 392789 - 392765 - g 80 -10.2 -3.69094 | AACTTAGTAGTCAAA TTATCAATGG GATTA CCATTGATAA GACTAAGTCGGAACG PEPE_0345 392323 - 393123 + | HAD superfamily hydrolase TERM 447 393131 - 393159 + T 93 -6.8 -5.33405 | gap 1, opp_overlap 393132, overlap 393132 TTAAATAAATAAAAA AGGAAGTAG-CCT TTAA AGGACTACTTCCC TTTTTATTTAATCAA TERM 448 393158 - 393132 - T 100 -10.3 -5.85425 | gap 1, opp_overlap 393132 393131 TAAATAAATAAAAAA GGAAGTAG-CCT TTAA AGGACTACTTCC CTTTTTATTTAATCA TERM 449 393132 - 393158 + T 89 -10.3 -3.78958 | gap 1, opp_overlap 393132, overlap 393131 TAAATAAATAAAAAA GGAAGTAG-CCT TTAA AGGACTACTTCC CTTTTTATTTAATCA PEPE_0346 394552 - 393167 - | hemolysin-like protein TERM 450 394047 - 394029 - G 70 -7.4 -3.73775 | TGCATCCCTAGCAAA CGGACAAT TCC ATTGGCCG AAGCATTAAGCAACC PEPE_0347 394712 - 395650 + | oxidoreductase TERM 451 395697 - 395660 - T 100 -8.5 -5.37593 | opp_overlap 395660 CCTTAAATTAAAAAA TAGTAACGTCCCTTACT TTAT AGTGAGGCGCGTTACTA TTTTTTATTTCTTTT TERM 452 395660 - 395697 + T 100 -12.9 -5.88476 | opp_overlap 395660 CCTTAAATTAAAAAA TAGTAACGTCCCTTACT TTAT AGTGAGGCGCGTTACTA TTTTTTATTTCTTTT PEPE_0348 396331 - 395702 - | hypothetical protein PEPE_0349 396684 - 396352 - | hypothetical protein PEPE_0350 396830 - 397360 + | BS_ykrK family protein TERM 453 397366 - 397397 + T 93 -8.1 -5.27779 | opp_overlap 397366 GATTAAATAAAAAAA GAGGATCTACGAT TTATTT GTCGTAGGTTCTC TTTTTTACTATTCAA TERM 454 397397 - 397366 - T 85 -3 -5.99154 | opp_overlap 397366 GATTAAATAAAAAAA GAGGATCTACGA TTTATTTG TCGTAGGTTCTC TTTTTTACTATTCAA PEPE_0351 397905 - 397405 - | hypothetical protein PEPE_0352 398018 - 398740 + | GntR family transcriptional regulator TERM 455 398746 - 398767 + F 100 -10.3 -5.15969 | opp_overlap 398746 TGTCGATTAAGCAAA GCATCTAAT TTTG ATTAGATGC TTTTTTACGTTAGAA TERM 456 398767 - 398746 - f 89 -10.3 -3.95584 | opp_overlap 398746 TGTCGATTAAGCAAA GCATCTAAT TTTG ATTAGATGC TTTTTTACGTTAGAA PEPE_0353 398927 - 401290 + | putative phosphoketolase TERM 457 401343 - 401309 - T 100 -15.1 -5.85244 | opp_overlap 401309 AATCAAAACAAAAAA GCTGAAAGCTTTGCC AATAG GGCATAGCTTCCAGC TTTTTTATTTAGTTA TERM 458 401309 - 401343 + T 100 -12.9 -5.72053 | opp_overlap 401309 AATCAAAACAAAAAA GCTGAAAGCTTTGCC AATAG GGCATAGCTTCCAGC TTTTTTATTTAGTTA PEPE_0354 402238 - 401348 - | pseudouridylate synthase, 23S RNA-specific TERM 459 402299 - 402259 - R 79 -8.5 -3.90856 | opp_overlap 402264 402267, overlap 402264 AACTCCTTAACGAAA TAAAAGAATCGACTCAACA AAA TGTTCAATCGATCCTTTAA GTATATGGTATTAAT TERM 460 402294 - 402264 - R 91 -8.4 -4.99947 | opp_overlap 402264 402267, overlap 402259 CTTAACGAAATAAAA GAATCGACTCAACA AAA TGTTCAATCGATCC TTTAAGTATATGGTA PEPE_0355 402772 - 402320 - | universal stress protein UspA-like nucleotide-binding protein TERM 461 402665 - 402681 + g 74 -5.9 -4.62471 | GACATTTAAAATATC GAGATGA GTG TCATTTC TTTTTGCAACTTCAA TERM 462 402937 - 402920 - R 85 -9.1 -4.05788 | CTTGCGCAAATTAAA TGGCGAC TACG GCCGCCA TTAAGCACTCTGCTT TERM 463 402975 - 402998 + r 100 -7.4 -5.63517 | GAGACTGAATGCAAG GGCTCGTGGT AATT ACTGCGAGTC TTTTTTATTTCCACC PEPE_0356 403866 - 403003 - | 3-hydroxyisobutyrate dehydrogenase related beta-hydroxyacid dehydrogenase TERM 464 403114 - 403142 + g 77 -6.1 -4.77986 | overlap 403100 GGCAGGTAAATCAAC TTGCATTTGCTTA GCT TGATCAAGTGCAA TTTTTAAATCTTTAA PEPE_0357 403998 - 404468 + | hypothetical protein TERM 465 404483 - 404471 - f 80 -6.3 -4.75219 | TAATGAGGAATAAAA TAGGA GGT TCCTA TGAAGAGATTTGAGC PEPE_0358 404483 - 405148 + | hypothetical protein PEPE_0359 405135 - 405365 + | hypothetical protein TERM 466 405379 - 405411 + T 81 -2.9 -5.75478 | opp_overlap 405379, overlap 405375 AGCTACGATAGTTAA GATTTAATTTTGA GGTCTAA TCGAAACTAAATC TTTTTTTATATGATT TERM 467 405475 - 405436 - T 100 -15.3 -5.34309 | opp_overlap 405436 ATGATTAAATAAAAA CTCTAGCAAAGTTAGAT TTTGGT AGCTAACTTTGCTAGAG TTTTTAAGCTTTTTC TERM 468 405436 - 405475 + T 100 -15.3 -4.7657 | opp_overlap 405436 ATGATTAAATAAAAA CTCTAGCAAAGTTAGAT TTTGGT AGCTAACTTTGCTAGAG TTTTTAAGCTTTTTC TERM 469 405490 - 405500 + T 72 -2.4 -5.37593 | GTTTTTAAGCTTTTT CCTC TGG GCGG TTTTTTAATTTGCGC PEPE_0360 406120 - 405479 - | hypothetical protein TERM 470 406260 - 406274 + r 70 -7.2 -3.64703 | TCGAGATAGGTCAGA CAATTC TTT GAATTG TTTCGCTGCGGCGAC TERM 471 406429 - 406400 - R 100 -15.2 -4.12902 | opp_overlap 406400 TAATGACCGGTAAAA GAGGATGGACAA TTAATT TTGTCCATCCTC TTTTTTTGTCTATTT TERM 472 406400 - 406429 + r 100 -15.2 -5.82281 | opp_overlap 406400 TAATGACCGGTAAAA GAGGATGGACAA TTAATT TTGTCCATCCTC TTTTTTTGTCTATTT PEPE_0361 407290 - 406439 - | SAM-dependent methyltransferase TERM 473 407013 - 407032 + g 73 -10 -2.52082 | overlap 407012 407010 407031 TCCCACAATTGGTCA CCTCTAGG ATCA CCTAGGGG ATATTGATCCTTAAT TERM 474 407232 - 407246 + g 79 -4.2 -5.27477 | TAGTTGTTAGTTGTT GAAACG GGG CGTTCC TTTTTTAATTGACGT PEPE_0362 407712 - 407290 - | XRE family transcriptional regulator TERM 475 407829 - 407841 + H 87 -7.7 -4.83615 | CCGGAAATTATGATG GGTTG ATA CAACC TTTTTGTAAGAAATA PEPE_0363 408015 - 408947 + | alpha/beta fold family hydrolase TERM 476 408953 - 409008 + T 84 -6.5 -5.28176 | gap 2 TATGGATTAAAAAAA CTATGGTAGCAGGTTGTCTCTGACACT AAGC AGTG-CA-AGGTGACTTGTTATCATAG TTTTTTATGCGTAAA PEPE_0364 410989 - 409013 - | NhaP-type Na+/H+ and K+/H+ antiporter TERM 477 411037 - 411062 + r 89 -10.6 -3.83205 | opp_overlap 411037 CAAGCGTACCAAAAA GCCACAAAAA AATCGA TTTTTGTGGC TTTGGTATAGAGGAT TERM 478 411062 - 411037 - R 100 -10.6 -4.74801 | opp_overlap 411037 CAAGCGTACCAAAAA GCCACAAAAA AATCGA TTTTTGTGGC TTTGGTATAGAGGAT PEPE_0365 412038 - 411079 - | inosine-uridine nucleoside N-ribohydrolase TERM 479 411364 - 411345 - G 70 -7.9 -3.57561 | TGGTAATTTTGTAAA CGTCGAT ATAGTA ATCGACG ATATCAGCAAATTTA TERM 480 411863 - 411847 - G 73 -6.5 -4.24342 | overlap 411850 TTCCTCACCAAGAAA GACCGGA ATA TCCGTTC GGCCTAGTAATTCAA PEPE_0366 412199 - 413185 + | thioredoxin reductase TERM 481 413202 - 413232 + T 100 -15.7 -5.10461 | opp_overlap 413202 CTGAATATATAAAAA TGCAGTGAACTTA AAAAC TAAGTTCACTGCA TTTTTGTTAACTGCC TERM 482 413232 - 413202 - T 100 -16.4 -5.10064 | opp_overlap 413202 CTGAATATATAAAAA TGCAGTGAACTTAA AAA CTAAGTTCACTGCA TTTTTGTTAACTGCC PEPE_0367 415395 - 413239 - | phosphoglycerol transferase/alkaline phosphatase superfamily protein PEPE_0368 415601 - 416032 + | acetyltransferase PEPE_0369 416032 - 417138 + | multitransmembrane protein PEPE_0370 417131 - 417892 + | multitransmembrane protein TERM 483 417884 - 417937 + T 76 -5.5 -5.10208 | gap 2, opp_overlap 417884 417900 CAACGCAAACAAAAA GAACTG-TAACGAC-GAATCAGGCT GGTGAA AGCCTGAGACAGTAGTTAACAGTTC TTTTTATTAACGTTA TERM 484 417937 - 417884 - T 84 -5.5 -5.33026 | gap 2, opp_overlap 417884, overlap 417900 CAACGCAAACAAAAA GAACTG-TAACGAC-GAATCAGGCT GGTGAA AGCCTGAGACAGTAGTTAACAGTTC TTTTTATTAACGTTA PEPE_0371 418888 - 417950 - | Mg2+ and Co2+ transporter PEPE_0372 419000 - 419737 + | hypothetical protein PEPE_0373 419777 - 420106 + | Thiol-disulfide isomerase and thioredoxin PEPE_0374 420093 - 420953 + | hypothetical protein PEPE_0375 420992 - 421774 + | methionine aminopeptidase TERM 485 421780 - 421820 + T 100 -10.6 -4.77036 | opp_overlap 421785, overlap 421785 GTATTTGTAGAAGCA AAAAAGGAAGCCTTGACT TTTTT AGTCGAGACTTCCTTTTG TTTTTGATGCTAAAA TERM 486 421815 - 421785 - T 100 -10.5 -5.32944 | opp_overlap 421785 421780 TGTAGAAGCAAAAAA GGAAGCCTTGACT TTTTT AGTCGAGACTTCC TTTTGTTTTTGATGC TERM 487 421785 - 421815 + T 100 -10.5 -5.3104 | opp_overlap 421785, overlap 421780 TGTAGAAGCAAAAAA GGAAGCCTTGACT TTTTT AGTCGAGACTTCC TTTTGTTTTTGATGC PEPE_0376 422232 - 421858 - | lactoylglutathione lyase related lyase TERM 488 423182 - 423163 - g 70 -5.8 -4.31329 | opp_overlap 423157, overlap 423157 TGAAAAAGCTGAAAA CTTCATTC GTAA GAATAAAG CCGGTCAACGTTCGA PEPE_0377 422351 - 423901 + | ABC transporter ATPase TERM 489 423914 - 423931 + T 100 -11.3 -5.1861 | opp_overlap 423914 TAACCAAGCAAAAAA GCAACCC CGTG GGGTTGC TTTTTTAATACTCAA TERM 490 423931 - 423914 - T 100 -11.3 -5.32565 | opp_overlap 423914 TAACCAAGCAAAAAA GCAACCC CGTG GGGTTGC TTTTTTAATACTCAA PEPE_0378 424802 - 423951 - | aldo/keto reductase TERM 491 424519 - 424529 + g 71 -3.2 -5.12617 | opp_overlap 424510, overlap 424507 AATTTAGCTAAACTA GTGT CTA ACGC TTTTTTAGCTGATTC TERM 492 424874 - 424898 + r 100 -14.5 -4.71061 | opp_overlap 424874 GTAAGCTAGTAAAAA GGACTAACTAA AAA TTAGTTAGTCC TTTTTAAATATGACT TERM 493 424898 - 424874 - R 100 -14.5 -4.77157 | opp_overlap 424874 GTAAGCTAGTAAAAA GGACTAACTAA AAA TTAGTTAGTCC TTTTTAAATATGACT PEPE_0379 425836 - 424922 - | prolyl aminopeptidase PEPE_0380 428388 - 425950 - | x-prolyl-dipeptidyl aminopeptidase PEPE_0381 428628 - 429974 + | xanthine/uracil/vitamin C permease TERM 494 430033 - 429987 - T 100 -12.7 -3.30323 | gap 1, opp_overlap 429992, overlap 429992 TAGTATGAAATAAAT TAAAAGAGTTGTGATTAAAGAC ATTT GCCTTTA-TCACAACTCTTTTT TTATTGGGCCAGTTT TERM 495 430028 - 429992 - T 100 -12.6 -4.72863 | gap 1, opp_overlap 429992, overlap 429987 TGAAATAAATTAAAA GAGTTGTGATTAAAGAC ATTT GCCTTTA-TCACAACTC TTTTTTTATTGGGCC TERM 496 429992 - 430028 + T 100 -10.4 -5.7946 | gap 1, opp_overlap 429992 429987 TGAAATAAATTAAAA GAGTTGTGATTAAAGAC ATTT GCCTTT-ATCACAACTC TTTTTTTATTGGGCC PEPE_0382 431422 - 430034 - | amino acid transporter TERM 497 430353 - 430342 - G 73 -4.4 -4.89393 | GAAAGGCGATAAAAA TGGT AACT ACCA CCATGGCATTGCGTG PEPE_0383 431572 - 431994 + | NUDIX family hydrolase TERM 498 432026 - 432059 + T 87 -11 -3.50326 | opp_overlap 432028, overlap 432028 AAATAAGTACAGAAA AAGGGCTGCGACAC ATTTAA GTGTCACAGCCCTC TTATCCTCATTTGAT TERM 499 432028 - 432057 + T 100 -13.6 -3.31802 | opp_overlap 432028, overlap 432026 ATAAGTACAGAAAAA GGGCTGCGACAC ATTTAA GTGTCACAGCCC TCTTATCCTCATTTG TERM 500 432057 - 432028 - T 100 -15.8 -5.05079 | opp_overlap 432028 432026 ATAAGTACAGAAAAA GGGCTGCGACAC ATTTAA GTGTCACAGCCC TCTTATCCTCATTTG PEPE_0384 432273 - 432097 - | hypothetical protein TERM 501 432939 - 432923 - g 84 -2.3 -5.69793 | ACACCAAACAAAAAA TTGATCA ATT TTATCAA AGAGTTAAAGAAGCA PEPE_0385 432400 - 432981 + | guanylate kinase PEPE_0386 433029 - 433478 + | Fe2+/Zn2+ uptake regulation protein PEPE_0387 433573 - 434079 + | hypothetical protein TERM 502 434251 - 434267 + G 71 -3.7 -4.93316 | overlap 434253 GCTATCTTAGAGGAT TATTGCT ATT AGCAATC TTTTTAGTGTTCTTG PEPE_0388 434091 - 434945 + | hypothetical protein TERM 503 434962 - 434992 + F 100 -11.2 -5.66684 | opp_overlap 434958 434962 GTATAAAATAATTAA GGACTGTTCAAGCG ATA TGCTTTGACAGTCC TTTTTTTGTCGCTTA TERM 504 434992 - 434962 - f 75 -8.3 -3.72078 | opp_overlap 434962, overlap 434958 GTATAAAATAATTAA GGACTGTTCAAGC GATAT GCTTTGACAGTCC TTTTTTTGTCGCTTA PEPE_0389 435098 - 435838 + | ABC-type polar amino acid transport system, ATPase component PEPE_0390 435850 - 436686 + | amino acid ABC transporter periplasmic protein TERM 505 436870 - 436886 + G 73 -9.5 -3.02986 | opp_overlap 436868 436885, overlap 436869 436882 436885 TGGTAAGAAACATTC CGTTACT AGT AGTAACG ATGTTTTTCTACATC PEPE_0391 436683 - 437333 + | ABC-type amino acid transport system, permease component PEPE_0392 437333 - 437989 + | ABC-type amino acid transport system, permease component TERM 506 438044 - 437992 - T 100 -16.8 -4.47328 | gap 1, opp_overlap 438001, overlap 438001 AATTGCATCATAAAA TTATACAAATAGGACGAGTAACCTC ATCT AAGGTTACTCGTCCTATTTTT-TAA CATTGTGTTTACTGA TERM 507 438001 - 438036 + T 100 -19.3 -5.11033 | opp_overlap 437992 438001 ATAAAATTATACAAA TAGGACGAGTAACCT CATCTA AGGTTACTCGTCCTA TTTTTTAACATTGTG TERM 508 438036 - 438001 - T 100 -20 -4.21701 | opp_overlap 438001, overlap 437992 ATAAAATTATACAAA TAGGACGAGTAACCTC ATCT AAGGTTACTCGTCCTA TTTTTTAACATTGTG PEPE_0393 438610 - 438053 - | acetyltransferase PEPE_0394 439349 - 438636 - | transcriptional regulator TERM 509 439069 - 439090 + g 75 -2.3 -5.47218 | gap 1, overlap 439070 AGCTGCTCCAACCGA T-GCCGTTCG GTC TGAATGGCTA TTTTTTTAGCTAACA TERM 510 439070 - 439088 + g 78 -7.4 -4.37763 | overlap 439069 GCTGCTCCAACCGAT GCCGTTCG GTC TGAATGGC TATTTTTTTAGCTAA TERM 511 439395 - 439377 - R 82 -8.8 -4.04318 | TTCATAGAGTATAAA CCTTAGGG TAA CCCGAAGG TCAAGAGGAGTAAAA TERM 512 439437 - 439414 - R 100 -7.4 -5.56568 | opp_overlap 439414 AGAGGAGTAAAAAAA CAGACGTCCA TAAT TGAGCGTCTG TTTTTACTTTAATTA TERM 513 439414 - 439437 + r 88 -7.4 -5.04222 | opp_overlap 439414 AGAGGAGTAAAAAAA CAGACGTCCA TAAT TGAGCGTCTG TTTTTACTTTAATTA PEPE_0395 440712 - 439450 - | GTPase TERM 514 439766 - 439778 + g 75 -7.7 -4.07647 | opp_overlap 439766 439764 TAAATCATAGGAATA TCGGT TAC ACCGA TTTCGTTTAAGGTAT TERM 515 441047 - 441024 - g 84 -4.6 -5.66989 | CAAATAGTAAAAAAA CAGCAAAC ATTCAAGA GTCTGCTG AATTAGCAACAATGG PEPE_0396 440927 - 442549 + | ABC-type oligopeptide transport system, periplasmic component TERM 516 442574 - 442601 + F 85 -9.2 -3.9777 | GGAACAAATTACATT GGGTGAGAGTGA TACA TTGCTCTTACCC TTTGTGCATATTGGA PEPE_0397 442639 - 443568 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component PEPE_0398 443573 - 444598 + | ABC-type dipeptide/oligopeptide/nickel transport system, permease component TERM 517 445029 - 445013 - g 85 -7.3 -5.08011 | opp_overlap 445018, overlap 445018 AAAAGGCGCAAAAAA GAGCACT TGA AATGCTC AAGTTAGTGGGCATT PEPE_0399 444613 - 445686 + | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component PEPE_0400 445699 - 446646 + | ABC-type oligopeptide transport system, ATPase component TERM 518 446656 - 446683 + T 100 -12.8 -5.63645 | opp_overlap 446656, overlap 446659 AAGTGAGTATAAAAA GAAGCTTGACGT TTTT ACGTCAAGCCTC TTTTTTATATTTTAG TERM 519 446683 - 446656 - T 100 -15 -4.92783 | opp_overlap 446656 446659 AAGTGAGTATAAAAA GAAGCTTGACGT TTTT ACGTCAAGCCTC TTTTTTATATTTTAG TERM 520 446659 - 446680 + T 100 -13.1 -3.21847 | opp_overlap 446656, overlap 446656 TGAGTATAAAAAGAA GCTTGACGT TTTT ACGTCAAGC CTCTTTTTTATATTT PEPE_0401 447356 - 446688 - | fructose-2,6-bisphosphatase PEPE_0402 448995 - 447364 - | amino acid transporter PEPE_0403 449688 - 449020 - | fructose-2,6-bisphosphatase TERM 521 451185 - 451202 + G 73 -8.5 -3.65581 | opp_overlap 451185 451184 AAACCGGTTCGAAAT GCGATTA TGCG TAATCGC TTCTTAAGCATTAAT PEPE_0404 449829 - 452126 + | superfamily I DNA/RNA helicase TERM 522 452148 - 452180 + F 86 -5.7 -5.35365 | opp_overlap 452137 452148 AAAATACAACACAAA GAGCTTAAAATAAGA TAC TTTTTTATTAAGCTC TTTTTATTATATTTT TERM 523 452810 - 452800 - g 89 -6.8 -5.4477 | AAACCTTTAAAAAAA CCGA TTC TCGG ACCGGCGAGCCCGAT PEPE_0405 452245 - 453921 + | acetolactate synthase PEPE_0406 453933 - 454637 + | Alpha-acetolactate decarboxylase PEPE_0407 454691 - 455608 + | pantothenate kinase TERM 524 455645 - 455612 - T 100 -18.4 -4.63527 | opp_overlap 455612 GTACGAGTTTAAAAA GATTGCCTAGTGAG GAATAG CTCACTAGGCAATC TTTTTTATTATAGGT TERM 525 455612 - 455645 + T 100 -18.4 -5.56673 | opp_overlap 455612 GTACGAGTTTAAAAA GATTGCCTAGTGAG GAATAG CTCACTAGGCAATC TTTTTTATTATAGGT PEPE_0408 456347 - 455664 - | Crp-like transcriptional regulator TERM 526 456418 - 456405 - H 87 -5.3 -5.58209 | opp_overlap 456405 TTAAATTTAAAAAAA TTGAC CTAC GTCAA TTTCAACTAGTTTGA PEPE_0409 456477 - 456707 + | copper chaperone PEPE_0410 456707 - 457261 + | DNA-binding ferritin-like protein (oxidative damage protectant) PEPE_0411 457264 - 459120 + | cation transport ATPase guaA 459253 - 460806 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 527 460958 - 460994 + T 100 -14.1 -5.95946 | opp_overlap 460958 460966 TTTACGTAGATTTAA TCTCTAAATTGGATTTT TCT AAAATCTAATTTAGGGA TTTTTTTGTTATTAG TERM 528 460994 - 460958 - T 76 -9.7 -3.1355 | opp_overlap 460958, overlap 460966 TTTACGTAGATTTAA TCTCTAAATTGGATTTT TCT AAAATCTAATTTAGGGA TTTTTTTGTTATTAG TERM 529 461340 - 461364 + T 100 -11.6 -5.4588 | opp_overlap 461340 TACCAAAATAAAAAA CTTCAGAAAG ACTAA CTTTCTGAAG TTTTTTATAGTTTTA TERM 530 461364 - 461340 - T 100 -11.6 -5.83211 | opp_overlap 461340 TACCAAAATAAAAAA CTTCAGAAAG ACTAA CTTTCTGAAG TTTTTTATAGTTTTA PEPE_0413 461788 - 461396 - | hypothetical protein TERM 531 461696 - 461717 + g 83 -8.8 -4.25283 | AATATAAAATTTTCG TCCAGCTA TCTGTC TAGCTGGA TTTTGATAAAGCGAT PEPE_0414 461951 - 462265 + | XRE family transcriptional regulator TERM 532 463015 - 462997 - g 75 -3.1 -5.18726 | opp_overlap 462997 TGTGGACAAGAAAAA GATGTTG AATTA CAGCATC TTAAATCTGGTGGCA PEPE_0415 462874 - 463530 + | hypothetical protein TERM 533 463570 - 463541 - f 100 -13 -3.96387 | opp_overlap 463541 ATTAATTTAATGAAA GACGTAACGCTG ATAAAA CAACGTTACGTC TTTTTTGATGAACCA TERM 534 463541 - 463570 + F 100 -10.8 -5.14563 | opp_overlap 463541 ATTAATTTAATGAAA GACGTAACGCTG ATAAAA CAACGTTACGTC TTTTTTGATGAACCA PEPE_0416 463663 - 465063 + | major facilitator superfamily permease PEPE_0417 465112 - 467646 + | lysyl aminopeptidase TERM 535 467685 - 467656 - T 84 -3.6 -5.86976 | opp_overlap 467656 GCATAAAATAAAAAA TTCAATCAGCGT TTAACG ACGTTGGTTGAA TTTTTTTGTTTATTT TERM 536 467656 - 467685 + T 100 -8.7 -6.11392 | opp_overlap 467656 GCATAAAATAAAAAA TTCAATCAGCGTT TAAC GACGTTGGTTGAA TTTTTTTGTTTATTT PEPE_0418 468321 - 467695 - | hypothetical protein TERM 537 467915 - 467935 + g 79 -6.9 -4.54297 | GAAGTTTGGATAGTT TCATCAGCT AAC GGTTGATGA TTATTTTGTTGTTCA PEPE_0419 469291 - 468641 - | metal-dependent membrane protease PEPE_0420 469476 - 469760 + | Co-chaperonin GroES (HSP10) TERM 538 471325 - 471339 + G 72 -8.6 -3.21912 | CAGCATTATTGTTAA CTACTG AAG CAGTAG TTGCTGACTTACCAG groEL 469788 - 471407 + | chaperonin GroEL TERM 539 471534 - 471504 - f 79 -6.9 -4.5852 | opp_overlap 471504, overlap 471499 TAATTTAAATTAAAA GAATCCATGATGC GATCA GCATTGTGGATTC TTTTTTATTTCCAAC TERM 540 471504 - 471534 + F 100 -11.3 -5.63517 | opp_overlap 471504 471499 TAATTTAAATTAAAA GAATCCATGATGC GATCA GCATTGTGGATTC TTTTTTATTTCCAAC PEPE_0422 471751 - 473583 + | amino acid transporter TERM 541 473618 - 473591 - f 87 -5.6 -5.5454 | opp_overlap 473597, overlap 473592 473597 TGAAATAAATAAAAA GTAAAACCTAGC TGAG GCTAGGTTTTTT TGTGTCAAAATATGA TERM 542 473617 - 473592 - f 81 -9.1 -3.90284 | opp_overlap 473597, overlap 473591 473597 GAAATAAATAAAAAG TAAAACCTAGC TGAG GCTAGGTTTTT TTGTGTCAAAATATG TERM 543 473597 - 473612 + F 100 -9 -5.71712 | opp_overlap 473592 473591 473597 AAATAAAAAGTAAAA CCTAGC TGAG GCTAGG TTTTTTTGTGTCAAA TERM 544 473612 - 473597 - f 93 -9 -4.88326 | opp_overlap 473597, overlap 473592 473591 AAATAAAAAGTAAAA CCTAGC TGAG GCTAGG TTTTTTTGTGTCAAA PEPE_0423 473734 - 474894 + | UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase TERM 545 474892 - 474927 + T 100 -10.6 -5.58454 | opp_overlap 474892 GAACGCCATAAAAAA TGAGGATAATAACGAT ATTA GTCGTTGTCATCCTCA TTTTTTTGATATGGA TERM 546 474927 - 474892 - T 100 -9.9 -5.27923 | opp_overlap 474892 GAACGCCATAAAAAA TGAGGATAATAACGA TATTAG TCGTTGTCATCCTCA TTTTTTTGATATGGA PEPE_0424 475562 - 474909 - | hypothetical protein TERM 547 476876 - 476865 - g 76 -3.6 -5.20783 | ATCGAAATATAAAAA GAGC TCAA GCCC AAACCAAATTTATGA PEPE_0425 475595 - 476914 + | superfamily II DNA/RNA helicase PEPE_0426 477154 - 477585 + | amidophosphoribosyltransferase PEPE_0427 477716 - 478270 + | SSU ribosomal protein S30P / sigma 54 modulation protein TERM 548 478328 - 478299 - f 75 -9.5 -2.81782 | opp_overlap 478299, overlap 478298 478297 ATACAAAACAAAATT GCTTAACAAAC TTCCAACG GTTTGTTAAGC TTTTTAAATATATTT TERM 549 478299 - 478328 + F 100 -10.2 -4.75356 | opp_overlap 478299 478298 478297 ATACAAAACAAAATT GCTTAACAAACT TCCAAC GGTTTGTTAAGC TTTTTAAATATATTT PEPE_0428 478431 - 480791 + | protein translocase subunit secA TERM 550 480843 - 480803 - f 77 -9.3 -3.36327 | gap 1, opp_overlap 480810, overlap 480810 GTAGTTGATTTATAA TATAAAACTGGGAA-GGT AATTTG ACCGTTCCCAGTTTTTTA ATGTGAAATGAAAAA TERM 551 480836 - 480810 - f 86 -7.4 -4.74285 | gap 1, opp_overlap 480810, overlap 480803 ATTTATAATATAAAA CTGGGAA-GGT AATTTG ACCGTTCCCAG TTTTTTAATGTGAAA TERM 552 480810 - 480836 + F 91 -7.4 -5.21709 | gap 1, opp_overlap 480810 480803 ATTTATAATATAAAA CTGGGAA-GGT AATTTG ACCGTTCCCAG TTTTTTAATGTGAAA TERM 553 480932 - 480918 - g 100 -8.6 -5.27399 | opp_overlap 480927 GAAGATATGAAAAAA GAAGTC GCT GACTTC GGGAGGTCTCTTTGA PEPE_0429 480873 - 480947 + | hypothetical protein TERM 554 481177 - 481193 + G 78 -10.9 -2.7782 | opp_overlap 481177, overlap 481176 GAGTTTGAGAGTGAA TTAGCCG CCA CGGCTAA ATTATTGCAGGATTA TERM 555 481193 - 481177 - g 80 -10.9 -3.12668 | opp_overlap 481177 481176 GAGTTTGAGAGTGAA TTAGCCG CCA CGGCTAA ATTATTGCAGGATTA TERM 556 481285 - 481265 - g 75 -7.5 -4.13872 | ACGCAATTATAGAAA TTCACCCCG GAG CGGGAGGAA CAGAATCTCAAGATT PEPE_0430 480958 - 481989 + | peptide chain release factor 2 PEPE_0431 482000 - 482704 + | DNA-binding response regulator TERM 557 482962 - 482978 + GF 78 -6.6 -4.49939 | opp_overlap 482961 TTCCCAAGATTCAAT TGGATC CAGAA GATCCA TTTTATAAATTATCT TERM 558 483250 - 483236 - gf 74 -8.6 -3.30159 | TGAATTGGTGGATAA CGTGTT TAG AACACG TCAGAGTACTACCAA TERM 559 483893 - 483904 + GF 73 -4.4 -4.85599 | AGGTCAGACGGACCG CGTT TTTG AACG TTTTTATCGGGTGAA PEPE_0432 482676 - 484061 + | Signal transduction histidine kinase TERM 560 484073 - 484098 + F 100 -6.3 -5.82388 | TTAAATATTGTGGAA TAAAGTTGAAT TTTA ATTCGGCTTTA TTTTTTTTACACTTT PEPE_0433 484224 - 485105 + | ABC-type phosphate transport system, periplasmic component PEPE_0434 485105 - 486013 + | ABC-type phosphate transport system, permease component TERM 561 486316 - 486295 - g 73 -3.7 -5.09204 | ATATGCGAAGAAAAA TCGAGTAAC TGAA GCTATTCGA ATTACCATTGAAGTT PEPE_0435 486014 - 486901 + | ABC-type phosphate transport system, permease component PEPE_0436 486919 - 487719 + | ABC-type phosphate transport system, ATPase component PEPE_0437 487733 - 488491 + | ABC-type phosphate transport system, ATPase component PEPE_0438 488503 - 489186 + | phosphate uptake regulator, PhoU TERM 562 489238 - 489196 - f 100 -19.6 -3.82665 | opp_overlap 489189 489196 GATTAGACCACGAAA CGAGTAGTTATTGCTAAATT AAA AATTTAGTAATAACTACTCG TTTTTTTGTATAAAG TERM 563 489196 - 489238 + F 100 -21.8 -5.71712 | opp_overlap 489196, overlap 489189 GATTAGACCACGAAA CGAGTAGTTATTGCTAAATT AAA AATTTAGTAATAACTACTCG TTTTTTTGTATAAAG TERM 564 489633 - 489611 - g 71 -3.4 -5.1517 | AAAAGAAATTAAAAA CGTTGAAG AACACGA CGTCAACG AATAAAGATGGGAGA PEPE_0439 489324 - 489638 + | putative stress-responsive transcriptional regulator PEPE_0440 489655 - 490011 + | hypothetical protein PEPE_0441 490029 - 490967 + | Serine kinase of the HPr protein, regulates carbohydrate metabolism TERM 565 491485 - 491514 + G 76 -2.8 -5.38047 | opp_overlap 491485, overlap 491487 TATTATTCAACAAAT GCTGATTGATGG AGCCTA CCGTCAACCAAC TTTTTTATATGAATC PEPE_0442 490979 - 491815 + | prolipoprotein diacylglyceryl transferase gpsA 491897 - 492913 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase PEPE_0444 492937 - 493818 + | UDP-glucose pyrophosphorylase TERM 566 493834 - 493865 + F 93 -6.7 -5.36441 | gap 1, opp_overlap 493834 TTATTGTATTTAAAA TCAAGCGATTCTGG GTTGA CCGGA-TCGTTTGA TTTTTTATATAAAAC PEPE_0445 493949 - 494875 + | thioredoxin reductase TERM 567 494909 - 494884 - f 82 -7.5 -4.37711 | opp_overlap 494887, overlap 494887 TGATTAAAGTCAAAA TAAGCCGCGGT GAAA ACCGGGGCTTT TCTTTTTGCCAAAAT TERM 568 494906 - 494887 - f 88 -9.2 -4.29139 | opp_overlap 494887, overlap 494884 TTAAAGTCAAAATAA GCCGCGGT GAAA ACCGGGGC TTTTCTTTTTGCCAA TERM 569 494887 - 494906 + F 95 -9.2 -5.26119 | opp_overlap 494884 494887 TTAAAGTCAAAATAA GCCGCGGT GAAA ACCGGGGC TTTTCTTTTTGCCAA TERM 570 495012 - 494998 - f 74 -7.2 -4.00124 | TATTGTATAATGAAA GTAACT ATA AGTTAC ATCATAGGAGGATTT TERM 571 495365 - 495378 + G 72 -2.3 -5.3104 | GGTGTTTTAGGTAAG CATGG TATT CCAAG TTTTGTTTTTGATAG PEPE_0446 495032 - 496756 + | alpha-phosphoglucomutase TERM 572 496819 - 496829 + F 77 -3.2 -5.59534 | overlap 496812 TCAGTTGGGCTTTTG GAGC ATA GTTC TTTTTTATTCTAATT PEPE_0447 496912 - 497541 + | HD superfamily hydrolase TERM 573 498868 - 498845 - g 79 -6.8 -4.70626 | GAAGAATTTGAAAAA CATATTAACC AAGT GGTTTATATG TCAGCTACCCCAGGT PEPE_0448 497678 - 499681 + | excinuclease ABC subunit B TERM 574 500407 - 500425 + G 72 -7.5 -3.79113 | TGCTACAGCAGATGT GATTGGT GGCGA ACCAATC TTGTTCTCAGAACAT TERM 575 502523 - 502502 - g 72 -7.3 -3.97051 | opp_overlap 502502 AAATATTTGAAAGAA GTTCTGGAG CGTG CTCAAGAAC TTAGTCAGAAATAAT PEPE_0449 499694 - 502537 + | excinuclease ABC subunit A TERM 576 502545 - 502561 + F 80 -5.8 -5.00642 | opp_overlap 502540 502545 AGAAATAATACAAAA GGGGCA ATTTG TGCTCC TTTTTATATAACTTA PEPE_0450 502636 - 503523 + | hypothetical protein PEPE_0451 503520 - 504521 + | hypothetical protein TERM 577 504707 - 504722 + G 70 -4.8 -4.61566 | opp_overlap 504707 TGCTAGAAGAATTTA TTCTTT ACTT AAAGAA TTTTATCATTTGGAA PEPE_0452 504534 - 505463 + | hypothetical protein TERM 578 505473 - 505506 + F 95 -9 -5.02476 | opp_overlap 505473 GCTTAATTAAAGCAA GAGGATATCTTCAG AAATAC TTGAAGGTGTCCTC TTTTTTACACAGTGT PEPE_0453 505640 - 508219 + | N-acetylmuramidase TERM 579 508243 - 508271 + F 88 -6.8 -5.24796 | opp_overlap 508243 508259 TAGGTTAAAATAGGA GACTGGAACATA CAATC TGTGTTACAGTC TTTTTATTATATGGG PEPE_0454 508304 - 508576 + | hypothetical protein TERM 580 508604 - 508582 - T 100 -15 -6.11229 | opp_overlap 508582 AGGAAAATAAAAAAA GACATCGGAA TTT TTCCGATGTC TTTTTTATGCCACTA TERM 581 508582 - 508604 + T 100 -15 -5.252 | opp_overlap 508582 AGGAAAATAAAAAAA GACATCGGAA TTT TTCCGATGTC TTTTTTATGCCACTA clpP 509214 - 508621 - | ATP-dependent Clp protease proteolytic subunit TERM 582 509362 - 509330 - H 86 -4.1 -5.79595 | CTTTAAAATAAAAAA CAACCTAGCCGGAGA AAA TTTTCGACCAGATTG CATATAGCGTCTAAT TERM 583 509760 - 509742 - g 72 -2.4 -5.27335 | opp_overlap 509746, overlap 509746 TTTCTCAAACAAAAA GAAATGGA TAA TCCACTTA TTACGGTTGAAATGG TERM 584 509756 - 509746 - g 78 -5.4 -5.12987 | opp_overlap 509746, overlap 509742 TCAAACAAAAAGAAA TGGA TAA TCCA CTTATTACGGTTGAA PEPE_0457 509598 - 510914 + | RNA polymerase factor sigma-54 PEPE_0458 511098 - 512129 + | central glycolytic genes regulator TERM 585 512146 - 512126 - f 75 -4.7 -5.0538 | opp_overlap 512117 512126 CGCGATTTTAAAAAA GTAAAGCCA TTG TGACTTAAC TTTTTAAAATAAATT PEPE_0459 512197 - 513219 + | glyceraldehyde-3-phosphate dehydrogenase TERM 586 513266 - 513295 + F 100 -20.1 -5.40072 | CGTCTAATCGGTCTA GGGACGGAGGGAG GTCA CTTCCTCCGTCCC TTTTTTTAGAAAAAA pgk 513342 - 514544 + | phosphoglycerate kinase TERM 587 514562 - 514581 + F 91 -9.4 -4.4767 | opp_overlap 514561 514550 514565 AAAGTTGTAGAAATC GAAGAATC AGTT GATTCTTC TTTTCTGCTACATAA tpiA 514624 - 515379 + | triosephosphate isomerase TERM 588 516139 - 516106 - g 77 -8.4 -3.89957 | gap 1, opp_overlap 516105, overlap 516099 GCTAACAATGAAGAA CCTCTTCAATA-CCT AATCA AGGCTATTGAAAAGG CTGGTTACAAACCAG PEPE_0462 515455 - 516777 + | enolase TERM 589 516819 - 516797 - f 100 -17.8 -3.92178 | opp_overlap 516797, overlap 516783 ATTAGGTCAATCAAA GAGGCGGACA TTT TGTCCGCCTC TTTTTTTGTTATTAA TERM 590 516797 - 516819 + F 100 -17.8 -5.95946 | opp_overlap 516783 516797 ATTAGGTCAATCAAA GAGGCGGACA TTT TGTCCGCCTC TTTTTTTGTTATTAA PEPE_0463 516904 - 517140 + | preprotein translocase subunit SecG TERM 591 517176 - 517164 - f 84 -3.4 -5.8187 | opp_overlap 517164 TATTGAACAAAAAAA TTGC ATTTA GCAA ATTCTGAAATTTAGA TERM 592 517212 - 517241 + F 100 -13.1 -5.68438 | opp_overlap 517211 517210 517218 GAATCATTAGGAACG GCTAAAGACGAAA TTAG TTTTGTCTTTAGC TTTTTTATTTAATAA TERM 593 519460 - 519449 - g 72 -2.2 -5.28176 | TGCATCCAGAAAAAA CACC TAAG AGTG ATATTCAACTTCCAC PEPE_0464 517279 - 519624 + | exoribonuclease R smpB 519639 - 520106 + | SsrA-binding protein TERM 594 520110 - 520132 + T 100 -13.6 -5.83226 | opp_overlap 520110 AAGAATAGATAAAAA GAGATTATCC AGC GGATAATCTC TTTTTTTGTTAGATT TERM 595 520132 - 520110 - T 100 -13.6 -5.1383 | opp_overlap 520110 AAGAATAGATAAAAA GAGATTATCC AGC GGATAATCTC TTTTTTTGTTAGATT PEPE_0466 520704 - 520141 - | acetyltransferase PEPE_0467 521260 - 520658 - | hypothetical protein PEPE_0468 522147 - 521275 - | HAD superfamily hydrolase TERM 596 522851 - 522863 + G 75 -7.7 -4.07568 | ATACCGGGGCTTCTT TGGCT CAA AGCCA TTTTCAAAAACCAAC PEPE_0469 522258 - 522950 + | uracil-DNA glycosylase PEPE_0470 522953 - 523426 + | ATPase or kinase TERM 597 523879 - 523852 - g 100 -15.6 -4.54727 | opp_overlap 523847 GTTTTCAAACTAAAA CGCCCCCAACCA TGGA TGGTCAGGGGCG TCAAATTATAAAAAT PEPE_0471 523416 - 523913 + | acetyltransferase PEPE_0472 524442 - 523906 - | DNA polymerase III, epsilon subunit related 3'-5' exonuclease PEPE_0473 524517 - 525434 + | dehydrogenase related protein TERM 598 525744 - 525732 - g 72 -6.3 -4.43309 | overlap 525736 525741 TAATTTTAACTAAAA TGGAT GAC ATCCA GGTCAATGGAAATGA murB 525479 - 526381 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 599 526437 - 526399 - f 87 -12.1 -2.69647 | opp_overlap 526399 526402, overlap 526402 AATTGGTATATATTA GAAGAGTTTAGAAAA ATAATTTGA TTTTCTAAACTCTTC TTTGTTCGAAAAGAC TERM 600 526399 - 526437 + F 100 -14.2 -4.15044 | opp_overlap 526399 526402, overlap 526402 AATTGGTATATATTA GAAGAGTTTAGAAAAATA ATT TGATTTTCTAAACTCTTC TTTGTTCGAAAAGAC TERM 601 526434 - 526402 - f 73 -8 -3.49777 | opp_overlap 526402 526399, overlap 526399 TGGTATATATTAGAA GAGTTTAGAAAA ATAATTTGA TTTTCTAAACTC TTCTTTGTTCGAAAA TERM 602 526402 - 526434 + F 93 -10.1 -4.20367 | opp_overlap 526399 526402, overlap 526399 TGGTATATATTAGAA GAGTTTAGAAAAATA ATT TGATTTTCTAAACTC TTCTTTGTTCGAAAA PEPE_0475 526512 - 527363 + | hypothetical protein PEPE_0476 527364 - 528293 + | hypothetical protein PEPE_0477 528312 - 529670 + | phosphoglucosamine mutase TERM 603 529739 - 529712 - f 95 -8.6 -5.25805 | opp_overlap 529712 AATAAATTTAAAAAA CTATGCTATTTT GCAA AAAATGGCATAG TTTTTTTATACGCGA TERM 604 529712 - 529739 + F 100 -10.8 -5.60993 | opp_overlap 529712 AATAAATTTAAAAAA CTATGCTATTTT GCAA AAAATGGCATAG TTTTTTTATACGCGA PEPE_0478 529906 - 531723 + | D-fructose-6-phosphate amidotransferase TERM 605 531741 - 531770 + F 86 -5.7 -5.47821 | opp_overlap 531743, overlap 531743 GTTAATATCTAAAAT AAGCGGTACAGGT GCTA AACTGTATCGCTA TTTTTTTGGATAAAT TERM 606 531768 - 531743 - f 70 -6.1 -4.25606 | opp_overlap 531743 531741 TAATATCTAAAATAA GCGGTACAGGT GCTA AACTGTATCGC TATTTTTTTGGATAA TERM 607 531743 - 531768 + F 85 -8.3 -4.37763 | opp_overlap 531743, overlap 531741 TAATATCTAAAATAA GCGGTACAGGT GCTA AACTGTATCGC TATTTTTTTGGATAA TERM 608 531890 - 531917 + F 87 -5.6 -5.60689 | gap 1 TTTCTCTCTTATGCT GGATCC-GACTAT CAA AAGGTCAGGATCC TTTTTTGTTGTCTAA PEPE_0479 531992 - 532303 + | hypothetical protein TERM 609 532735 - 532758 + T 71 -8.2 -3.35046 | overlap 532743 ACTTACGAAAATCTC TGGGACATTT TGCG GAGTGTCCCA TCTTTGGGACAATCC TERM 610 534224 - 534182 - T 100 -13 -4.18167 | opp_overlap 534187, overlap 534187 AAATAAGTATATAAA TAAAAGTACCGCAGAAAAAT TTA AATTTTCTACGGTACTTTTT ATTTGAGGATTTTAG TERM 611 534219 - 534187 - T 100 -12.9 -5.06016 | opp_overlap 534187, overlap 534182 AGTATATAAATAAAA GTACCGCAGAAAAAT TTA AATTTTCTACGGTAC TTTTTATTTGAGGAT TERM 612 534187 - 534219 + T 100 -10.7 -5.27938 | opp_overlap 534187 534182 AGTATATAAATAAAA GTACCGCAGAAAAAT TTA AATTTTCTACGGTAC TTTTTATTTGAGGAT PEPE_0481 534759 - 534223 - | hypothetical protein TERM 613 535104 - 535116 + G 74 -6.3 -4.67942 | CTCTATTGAATACGC GCTTT TCC AAAGC TTTTAATTTATTAGG TERM 614 535435 - 535454 + G 79 -8.6 -4.18018 | gap 1, opp_overlap 535420 535416 535413 CGCCCTGATGGTGGG CGATCGGCT TCA AGCCGA-CG TTTTGGGTGCCAAAC PEPE_0482 534905 - 535588 + | HAD superfamily hydrolase TERM 615 535656 - 535688 + F 100 -6.6 -5.58209 | gap 1, opp_overlap 535651 535656 GTCAACTAACTAAAA TGTTTTTC-AAGATT TTTA AATCTTTGAAGAACA TTTTTTTAGATTTCA TERM 616 535784 - 535736 - f 100 -11.2 -5.10208 | opp_overlap 535736 535733 535731 535738 535783 TAATTTTAAGAAAAA TAGGGTATCCAGCAAAACGC GCAGACAAG GCGTTTTAATGGATGCCCTA TACTATATATTGTAT TERM 617 535736 - 535784 + F 82 -11.2 -2.77834 | opp_overlap 535736, overlap 535733 535731 535738 535783 TAATTTTAAGAAAAA TAGGGTATCCAGCAAAACGC GCAGACAAG GCGTTTTAATGGATGCCCTA TACTATATATTGTAT TERM 618 535738 - 535782 + F 75 -9.4 -2.92657 | opp_overlap 535736, overlap 535736 535733 535731 ATTTTAAGAAAAATA GGGTATCCAGCAAAACGC GCAGACAAG GCGTTTTAATGGATGCCC TATACTATATATTGT TERM 619 535980 - 535996 + G 79 -2.3 -5.66989 | overlap 535982 TATCAATCAACCTCA TATTTCA AAG TGAAACA TTTTTTTAATGTTTG PEPE_0483 535917 - 537203 + | manganese transporter NRAMP TERM 620 538672 - 538660 - g 70 -7.7 -3.55444 | GGTGCATTTGGCAAA CGTCT CCA AGACG AAGACGAGGTCGATG PEPE_0484 537223 - 539394 + | anaerobic ribonucleoside triphosphate reductase PEPE_0485 539387 - 539974 + | ribonucleoside-triphosphate reductase class III activase subunit PEPE_0486 539991 - 540752 + | Fe-S cluster assembly ABC-type transport system, ATPase component PEPE_0487 540790 - 541818 + | Fe-S cluster assembly ABC-type transport system, permease component PEPE_0488 541831 - 543006 + | cysteine sulfinate desulfinase/cysteine desulfurase PEPE_0489 543003 - 543443 + | Fe-S cluster formation protein, NifU-like TERM 621 543481 - 543508 + G 71 -4 -5.00616 | gap 1, opp_overlap 543481, overlap 543484 543504 CAATTAAGGGATGAA CGTGGAGCGATGG ATC CAGTCGCCCC-CG TTTTTTCAACAGGAG PEPE_0490 543433 - 544842 + | Fe-S cluster assembly ABC-type transport system, permease component TERM 622 544851 - 544899 + F 100 -11.4 -5.60993 | gap 2, opp_overlap 544851 544867 TGGATAAATTGAAAA GAGTAATACGT-AAAAAGCC-CTA TAA TGGCGGCTTTTAGACGTATTACTC TTTTTTTATAAACAA TERM 623 544899 - 544851 - f 89 -9.2 -4.39571 | gap 2, opp_overlap 544851, overlap 544867 TGGATAAATTGAAAA GAGTAATACGT-AAAAAGCC-CTA TAA TGGCGGCTTTTAGACGTATTACTC TTTTTTTATAAACAA PEPE_0491 544998 - 545534 + | phenolic acid decarboxylase PEPE_0492 545561 - 546091 + | PadR family transcriptional regulator TERM 624 546136 - 546098 - f 72 -3.3 -5.25906 | gap 1 ATAAACTAATAAAAA GCGTTGAATC-TAAGC TGAGTTAG GCTGATAATTCAACGC TTTTTTTGATGGTTT PEPE_0493 546319 - 546636 + | hypothetical protein TERM 625 547145 - 547128 - T 87 -5.6 -5.65678 | opp_overlap 547128 ATAAAATACAAAAAA CAGCAA GTTGAT TTGCTG TTTTAGAGGAGGGCC TERM 626 547157 - 547177 + T 100 -10.5 -5.48063 | opp_overlap 547156 GCTGTTTTAGAGGAG GGCCAACTT TTG AAGTTGGTC TTTTTTATATTAGAT PEPE_0495 549540 - 547219 - | amino acid transporter PEPE_0496 550824 - 549706 - | methionine synthase II (cobalamin-independent) TERM 627 550892 - 550862 - H 100 -13.5 -6.02914 | opp_overlap 550860 TTTAGATAAAAAAAA GCCCTTATACAGA ATTGA TCTGTATAAGGAC GATATTGCCGTGTTA TERM 628 550968 - 550993 + H 76 -8.5 -3.37499 | gap 1, opp_overlap 550968 550969 550985, overlap 550965 CAAAAAAACTGACAA TCC-CATTGTTT TAT AAACAATGAGGA TTCATTGAACTATTA TERM 629 550993 - 550968 - H 77 -8.5 -3.6185 | gap 1, opp_overlap 550965 550968, overlap 550969 550985 CAAAAAAACTGACAA TCC-CATTGTTT TAT AAACAATGAGGA TTCATTGAACTATTA TERM 630 550991 - 550969 - H 77 -10 -2.75483 | opp_overlap 550965 550968, overlap 550968 550985 AAAAAAACTGACAAT CCCATTGTTT TAT AAACAATGAG GATTCATTGAACTAT TERM 631 551416 - 551362 - H 100 -17.6 -3.71527 | opp_overlap 551377, overlap 551363 551377 GGTCAAGTAGTTAAA GGGTAGATTGCAAAATTAATCCGAAC GTC GTTCAGATTAATTTTACAATCTACAT CTACCAATATAATGT TERM 632 551415 - 551363 - H 100 -21.1 -2.82595 | opp_overlap 551377, overlap 551362 551377 GTCAAGTAGTTAAAG GGTAGATTGCAAAATTAATCCGAAC GTC GTTCAGATTAATTTTACAATCTACA TCTACCAATATAATG TERM 633 551377 - 551401 + H 87 -8.7 -4.1721 | opp_overlap 551363 551362 551377 GGGTAGATTGCAAAA TTAATCCGAAC GTC GTTCAGATTAA TTTTACAATCTACAT TERM 634 551401 - 551377 - H 100 -10.9 -4.16943 | opp_overlap 551377, overlap 551363 551362 GGGTAGATTGCAAAA TTAATCCGAAC GTC GTTCAGATTAA TTTTACAATCTACAT TERM 635 551458 - 551485 + H 95 -9.2 -5.20216 | opp_overlap 551460, overlap 551460 TAAATAGAGCCAAAA AAGGTCACAACT TAAC AGTTGTGGCCTG TTTTTTGATGCTGTA TERM 636 551460 - 551483 + H 100 -11.8 -4.22314 | opp_overlap 551460, overlap 551458 AATAGAGCCAAAAAA GGTCACAACT TAAC AGTTGTGGCC TGTTTTTTGATGCTG TERM 637 551483 - 551460 - H 100 -9.6 -5.15381 | opp_overlap 551460 551458 AATAGAGCCAAAAAA GGTCACAACT TAAC AGTTGTGGCC TGTTTTTTGATGCTG TERM 638 551658 - 551646 - g 74 -4.9 -5.00616 | CCGGTGCCCAAAAAA TTTTC CAA GAAAA GTATACCGGCACAAC PEPE_0497 551558 - 552118 + | site-specific recombinase, DNA invertase Pin related proteins PEPE_0498 553239 - 552310 - | IS30 family transposase TERM 639 552439 - 552416 - G 81 -10.4 -3.53343 | AACGTCGTTGTTAAA TCTTGAGCAC TAAT GTGCTCAAAA CAAGTCCCCTTAGGG TERM 640 553296 - 553242 - R 95 -10.4 -4.5954 | gap 2, opp_overlap 553242 TTATACTAGACAAAA GATCAGC-TCCTAAAAAATGG-GTTT GTGGT AAACACCATTTTAAAGGAAGCTGATC TTTTTTGTCCGAACA TERM 641 553242 - 553296 + r 100 -11.1 -5.24129 | gap 2, opp_overlap 553242 TTATACTAGACAAAA GATCAGC-TCCTAAAAAATGG-GTTTG TGG TAAACACCATTTTAAAGGAAGCTGATC TTTTTTGTCCGAACA TERM 642 553300 - 553324 + r 80 -7.9 -4.16943 | overlap 553304 AGGAAGCTGATCTTT TTTGTCCGAAC AGC GTTCGGATTAA TTTTACAATCTACCA TERM 643 553304 - 553320 + r 89 -10.9 -3.68767 | overlap 553300 AGCTGATCTTTTTTG TCCGAAC AGC GTTCGGA TTAATTTTACAATCT PEPE_0499 553748 - 553347 - | pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein TERM 644 553712 - 553699 - G 71 -3.1 -5.09225 | ACTGTAGCTAAAAAA GGAAA TTGT TCTCC AATCATAGTTTTCAT TERM 645 554218 - 554193 - H 82 -6.1 -5.01546 | opp_overlap 554193 AAATCTACATAAAAA GCCAAAGTGAA CCGA TTCTCTTGGGC TTTTTCAACATCCTA TERM 646 554193 - 554218 + H 76 -6.1 -4.60487 | opp_overlap 554193 AAATCTACATAAAAA GCCAAAGTGAA CCGA TTCTCTTGGGC TTTTTCAACATCCTA PEPE_0500 554364 - 554537 + | hypothetical protein PEPE_0501 554977 - 554786 - | hypothetical protein TERM 647 555830 - 555856 + G 79 -5.9 -4.92783 | gap 1 GCGTTTTCTAGATGG TGCTAATCGCCG TGAA TGGCGGTT-GCA TTTTTCTAATGACTT TERM 648 556291 - 556259 - g 76 -10.6 -2.85437 | opp_overlap 556265, overlap 556256 TACCAATAGCAATGA TGCGCCTGGAATGG TTCAT CCATTCCATGTGCA TGGAACCCAATTCTT PEPE_0502 555105 - 556634 + | putative multicopper oxidase TERM 649 556778 - 556791 + G 72 -5.3 -4.54727 | AGCACCGCTTATCCT GCTTT TATG AAAGC TTTTGGTTTAGGAGC PEPE_0503 556673 - 558046 + | major facilitator superfamily permease TERM 650 558077 - 558104 + F 100 -9.9 -5.07486 | opp_overlap 558077 TTGCATCTACAAAAA TGACCGCCTAC CAAAAA GTAGACGGTCA TTTTTGTTGCAACTA TERM 651 558104 - 558077 - f 100 -12.8 -4.87665 | opp_overlap 558077 TTGCATCTACAAAAA TGACCGCCTACC AAAA AGTAGACGGTCA TTTTTGTTGCAACTA PEPE_0504 558257 - 558595 + | hypothetical protein TERM 652 558622 - 558667 + F 100 -15 -4.1721 | opp_overlap 558622 TGGTAGATTGTAAAA TTAATCCGAACGCTGATC TTTTTTGTCC GAACAGCGTTCGGATTAA TTTTACAATCTACCT TERM 653 558667 - 558622 - f 100 -15 -4.16943 | opp_overlap 558622 TGGTAGATTGTAAAA TTAATCCGAACGCTGATC TTTTTTGTCC GAACAGCGTTCGGATTAA TTTTACAATCTACCT PEPE_0505 558703 - 558816 + | hypothetical protein TERM 654 559012 - 559000 - g 70 -4.8 -4.58308 | opp_overlap 559000 CACGAATGAAAGAAA CCCT GAACA AGGG TTTGAGTCGCCGCAT PEPE_0506 558813 - 559418 + | Phage Mu protein F like protein TERM 655 559435 - 559409 - T 100 -12.4 -5.87996 | overlap 559410 TAAGGAACAAAAAAA GCCCACTTAGTT TAA AACTAAGTGGGT CAGGAATATTATTAA TERM 656 559434 - 559410 - T 100 -15.9 -4.10357 | overlap 559409 AAGGAACAAAAAAAG CCCACTTAGTT TAA AACTAAGTGGG TCAGGAATATTATTA TERM 657 559478 - 559498 + T 83 -10.5 -3.05159 | overlap 559480 ACAACAAAGTCGAGG GGTGCTAAC TAA GTTAGCATC TATAATTTAGTATAA TERM 658 559480 - 559496 + T 76 -9.5 -3.07629 | overlap 559478 AACAAAGTCGAGGGG TGCTAAC TAA GTTAGCA TCTATAATTTAGTAT PEPE_0507 559785 - 559537 - | hypothetical protein TERM 659 559613 - 559581 - G 72 -7.9 -3.80452 | overlap 559584 559604 AAACTACAGCAACAA CAATTACTGCTCCAA TAA TTGAAGGAATAATTG CCATTCCGGCTAATT PEPE_0508 559923 - 559792 - | hypothetical protein PEPE_0509 560133 - 560279 + | hypothetical protein TERM 660 560841 - 560877 + T 95 -10.4 -4.41348 | opp_overlap 560846 560847, overlap 560847 AATAATTCTTATTTG CAAAAGCCGACAAT AGCGCGTTG ATTGTCGGTTTTTG TTTGTTTAAAAAAGG TERM 661 560847 - 560871 + T 90 -5.8 -5.5454 | opp_overlap 560846 560847, overlap 560841 TCTTATTTGCAAAAG CCGACAAT AGCGCGTTG ATTGTCGG TTTTTGTTTGTTTAA PEPE_0511 561876 - 561046 - | AraC family transcriptional regulator TERM 662 563626 - 563598 - g 76 -10.4 -2.5655 | gap 1, overlap 563597 TTTAGCTACACCAAT CGCTGGGCAAGTG ATTC CACTTGCCCAA-G TCAATGATCCAACTT PEPE_0512 562111 - 564039 + | Na+/xyloside symporter related transporter TERM 663 564247 - 564263 + G 83 -8 -4.652 | GGTGAATTGCGCTAT CCACGA GTCGA TCGTGG TTTTTCCGGTAATTT PEPE_0513 564097 - 566298 + | Alpha-galactosidase TERM 664 568525 - 568471 - f 74 -6 -4.5954 | gap 2, opp_overlap 568471 TTATACTAGACAAAA GATCAGC-TCCTAAAAGATGG-GTTT GTGGT AAACACCATTTTAAAGGAAGCTGATC TTTTTGTCCGAACAG TERM 665 568471 - 568525 + F 93 -8.9 -4.82901 | gap 2, opp_overlap 568471 TTATACTAGACAAAA GATCAGC-TCCTAAAAGATGG-GTTTG TGG TAAACACCATTTTAAAGGAAGCTGATC TTTTTGTCCGAACAG PEPE_0515 568566 - 568772 + | small membrane protein TERM 666 568840 - 568797 - T 87 -11.9 -2.77236 | opp_overlap 568802, overlap 568802 AAATTGACTGTAAAC TAAAAGTCCGCTAATACGT TTAAAC ACGTATCGGCGGACTTTTT TGCAAGGTGTTAAGC TERM 667 568802 - 568835 + T 100 -11.8 -5.02476 | opp_overlap 568802 568797 GACTGTAAACTAAAA GTCCGCTAATACGT TTAAAC ACGTATCGGCGGAC TTTTTTGCAAGGTGT TERM 668 568835 - 568802 - T 100 -11.8 -4.55798 | opp_overlap 568802, overlap 568797 GACTGTAAACTAAAA GTCCGCTAATACGT TTAAAC ACGTATCGGCGGAC TTTTTTGCAAGGTGT PEPE_0516 569716 - 568850 - | branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase PEPE_0517 571955 - 569796 - | Alpha-galactosidase PEPE_0518 573930 - 571975 - | sucrose PTS, EIIBCA TERM 669 573617 - 573628 + g 81 -4.4 -5.45802 | opp_overlap 573604 AAGACTTTGAGGAAG TCCA TTAA TGGA TTTTTCTTTTGACCC TERM 670 574121 - 574106 - H 84 -6.2 -5.18995 | overlap 574113 AATATAATATAAAAA TGTCAA ACGA TTGACA TATCGGTGTAAGCGG TERM 671 574498 - 574478 - g 79 -11.1 -2.94747 | CGATTCGACCAGATA CGCCGTACG ACT CACACGGCG CGTACACGGGTACAG PEPE_0519 574186 - 575691 + | beta-fructofuranosidase TERM 672 575801 - 575780 - g 81 -4.4 -5.35815 | opp_overlap 575780, overlap 575774 CAGACTAAAGAAAAA GTTTTCGC GGCGAT GCGAGAAC TGCATTATCAGCCGA PEPE_0520 575672 - 576652 + | LacI family transcription regulator PEPE_0521 576673 - 578349 + | oligo-1,6-glucosidase TERM 673 578501 - 578471 - T 100 -15.7 -5.52986 | opp_overlap 578471 ACCTGACTAAAAAAA CTGCTTTCAAAAG GATAA CTTTTGAAAGCAG TTTTTTTAGCGCGCG TERM 674 578471 - 578501 + T 100 -15.7 -5.40072 | opp_overlap 578471 ACCTGACTAAAAAAA CTGCTTTCAAAAG GATAA CTTTTGAAAGCAG TTTTTTTAGCGCGCG PEPE_0522 578764 - 578507 - | NADPH:quinone reductase related Zn-dependent oxidoreductase PEPE_0523 578915 - 579166 + | transposase PEPE_0524 579439 - 580029 + | transposase PEPE_0525 580444 - 580689 + | hypothetical protein PEPE_0527 581183 - 581467 + | transcriptional regulator TERM 675 581532 - 581510 - f 83 -10.6 -3.19522 | opp_overlap 581510, overlap 581498 TGATGGAATATTCAA GTTTCGAGCC TTA GGTTCGAAAC TTTTTTATTTCAGAT TERM 676 581510 - 581532 + F 100 -12.8 -5.64421 | opp_overlap 581510 581498 TGATGGAATATTCAA GTTTCGAGCC TTA GGTTCGAAAC TTTTTTATTTCAGAT TERM 677 581689 - 581671 - f 73 -7.6 -3.69663 | opp_overlap 581675 ATTATTATTTAATAA CTAATTAA TTT TTAATTAG TACCACAACCAAGTT TERM 678 582642 - 582632 - g 73 -4 -5.08255 | AGCGGTAAAACAAAA CTTT GAT AAAG CCGGAATTGAAGTGC PEPE_0528 581988 - 583346 + | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme TERM 679 583476 - 583498 + F 100 -8.5 -5.86976 | opp_overlap 583476 TGATGGAGTATTTAA GTTTCGAGC CCTGT GTTCGAAAC TTTTTTATTTTATCG TERM 680 583628 - 583618 - f 80 -5.4 -5.186 | TAAAAGATATAAAAA CTTG CCT CAAG TAGAGGTTAACAGTG TERM 681 583890 - 583867 - f 100 -12.6 -6.02919 | opp_overlap 583867 GGACAAACAAAAAAA GATACCGATA TTAA TATCGGTATC TTTTTCCAATTCTCC TERM 682 583867 - 583890 + F 100 -12.6 -4.6902 | opp_overlap 583867 GGACAAACAAAAAAA GATACCGATA TTAA TATCGGTATC TTTTTCCAATTCTCC PEPE_0529 584203 - 584382 + | hypothetical protein TERM 683 584445 - 584413 - T 100 -14.3 -5.30189 | TAGAACACCAAAAAA GACCAGCAAACATTG CCA CAATGTTCGCCAGTC CAACAGTTACGTACT TERM 684 584479 - 584494 + T 100 -7.6 -5.60689 | opp_overlap 584468 584478 584479 GAAATAAGCTAAAAG CGTACA AATA TGTACG TTTTTTATTATATCG PEPE_0531 587089 - 585611 - | MutH family type II restriction endonuclease TERM 685 585778 - 585795 + g 73 -2.7 -5.22104 | TAGGAAAATTTGGTG CTGATAC AATT GTGTTAG TTTTCTTATTTTTTC TERM 686 586720 - 586746 + g 75 -8.2 -3.72051 | AAACTAACAGCATTC GTTCTAATTTAT GCC AAAAATTAGAAC TTTCAAATTCTTCAG TERM 687 586953 - 586965 + g 79 -6.2 -4.98468 | TTTTCAATTACATCC CCGG CAATT CCGG TTATTTTTTTATTAT TERM 688 588304 - 588292 - g 70 -2.7 -5.13722 | overlap 588287 588298 TTCATTAAAACAAAA GACAA TCG TTATC GTTTGATAACTCCAA PEPE_0532 587203 - 588489 + | site-specific DNA methylase TERM 689 588516 - 588546 + F 100 -7.8 -5.66989 | opp_overlap 588516 TTTCTGTATAAAAAA GTAAGAAGTTAATT AAA AAATAACTTTTTAC TTTTTTTGCTATTTC TERM 690 588546 - 588516 - f 80 -5.6 -5.24129 | opp_overlap 588516 TTTCTGTATAAAAAA GTAAGAAGTTAATT AAA AAATAACTTTTTAC TTTTTTTGCTATTTC TERM 691 588754 - 588766 + G 70 -4.9 -4.57569 | ATTTTATTATTGATC GATTT GAT AAATC TTTTTCAAAAACTAC TERM 692 590211 - 590188 - g 89 -6.2 -5.6473 | opp_overlap 590180, overlap 590180 ATAATAGTAAAAAAA CTTTTATTCT AAAT AAAATAAAAG AGAGCGCAGGAATTT PEPE_0533 588654 - 591155 + | hypothetical protein TERM 693 591767 - 591756 - g 79 -4.4 -5.21683 | opp_overlap 591756 AGCTAAAAAAAGAAA TTGC AATA GCAA ATCTTATGTTAGATT TERM 694 592213 - 592174 - g 79 -9.6 -3.78934 | gap 1, opp_overlap 592179, overlap 592179 GTCGGTTGATAATAA GAAAATTTCAAT-GGCCCA GAA TGAGCCAATTGAAATTTTA GCTAAAGCAGTTAAT TERM 695 592179 - 592208 + G 73 -7.3 -4.18018 | gap 1, opp_overlap 592174 592179 TTGATAATAAGAAAA TTTCAA-TGGCCCA GAA TGAGCCAATTGAAA TTTTAGCTAAAGCAG TERM 696 592208 - 592179 - g 91 -9.5 -4.95547 | gap 1, opp_overlap 592179, overlap 592174 TTGATAATAAGAAAA TTTCAAT-GGCCCA GAA TGAGCCAATTGAAA TTTTAGCTAAAGCAG PEPE_0534 591152 - 592354 + | hypothetical protein TERM 697 592619 - 592608 - g 70 -3 -5.0666 | overlap 592604 CAGTTAAAAAATAAA CTTA GTTC TAAG ATTAAATTAAATTAT TERM 698 593309 - 593297 - g 79 -4.9 -5.26316 | GGATTCTATAAAAAA TTCAA AGT TTGAA ATAGAAGAAATATAT TERM 699 593874 - 593860 - g 74 -8.6 -3.67792 | opp_overlap 593860 CTATAGCTATTGAAA TTGCAC AAG GTGCAA TGTATAGATATGTCC PEPE_0535 592347 - 594929 + | SNF2 family DNA/RNA helicase PEPE_0536 595035 - 595256 + | hypothetical protein TERM 700 595281 - 595302 + T 100 -8.7 -5.56673 | TAAAAAATATATGTG GCTCTAGCT AATC GGCTGGAGC TTTTTTGTTATACAT TERM 701 595480 - 595469 - T 71 -3 -5.28176 | opp_overlap 595469 GTGATTTAGAAAAAA GAAT AAAT ATTC TGTTAATGCCACGCA PEPE_0537 597213 - 595591 - | RecD related helicase TERM 702 597028 - 597045 + g 70 -6.3 -4.27474 | gap 1, overlap 597038 TTTATAGGTGTTATC GCCAGTTG TTT CAAC-GGC TTTGTTGATAGCTTT TERM 703 597385 - 597355 - R 82 -7.8 -4.4595 | overlap 597356 GTAGAAAATTGAAAA CCTTTTTACTTTTT GAA AAAAAGTGAAAAGA CAGCAACTACTAGTA TERM 704 597384 - 597356 - R 77 -9.1 -3.26486 | overlap 597355 TAGAAAATTGAAAAC CTTTTTACTTTTT GAA AAAAAGTGAAAAG ACAGCAACTACTAGT PEPE_0538 597951 - 597526 - | hypothetical protein PEPE_0539 598337 - 598107 - | hypothetical protein TERM 705 598706 - 598752 + H 100 -11.3 -5.16572 | opp_overlap 598710 598719 TACAGATAATATGTA TAAATTTAAGAAATCTCACAA ACAAA TTGTGAAATCTCTTAAATTTA TTTTTTGAGTTGCCT TERM 706 598748 - 598710 - H 100 -12.1 -3.98842 | opp_overlap 598706, overlap 598719 GATAATATGTATAAA TTTAAGAAATCTCACAA ACAAA TTGTGAAATCTCTTAAA TTTATTTTTTGAGTT PEPE_0540 598886 - 600040 + | integrase TERM 707 600243 - 600205 - T 100 -10.5 -5.73339 | gap 1 AGAAGTACAAAAAAA TCCCGTCATAT-CAACGT TTTA ACGCTGTATACAACGGGA AGGAATAGCAAAAAT TERM 708 600655 - 600633 - T 77 -7.8 -3.96506 | GACCCCAAAATAGAA CCTATGATTT ATT ATATCATAGG ATGCCAGGTTTTAAC PEPE_0542 600815 - 600666 - | hypothetical protein TERM 709 601272 - 601285 + G 72 -2.3 -5.20606 | opp_overlap 601272 AAATAATGTTAATGA TGCCC ACAA GGGAA TTTTTATTGATATTT PEPE_0543 600943 - 601755 + | LPS biosynthesis protein PEPE_0544 601771 - 602556 + | integral membrane protein TERM 710 602535 - 602573 + T 100 -14 -3.76775 | opp_overlap 602535 602540, overlap 602540 CCCAGAATTGAAAAA TAAAAGAGGCCGTCGCTT TTA ATGCGATGACCTCTTTTA TTTAACTATCTTGAC TERM 711 602573 - 602535 - T 100 -14 -4.78149 | opp_overlap 602535 602540, overlap 602540 CCCAGAATTGAAAAA TAAAAGAGGCCGTCGCTT TTA ATGCGATGACCTCTTTTA TTTAACTATCTTGAC TERM 712 602568 - 602540 - T 100 -9.5 -5.29885 | opp_overlap 602535 602540, overlap 602535 AATTGAAAAATAAAA GAGGCCGTCGCTT TTA ATGCGATGACCTC TTTTATTTAACTATC TERM 713 602540 - 602568 + T 100 -9.5 -4.92385 | opp_overlap 602540 602535, overlap 602535 AATTGAAAAATAAAA GAGGCCGTCGCTT TTA ATGCGATGACCTC TTTTATTTAACTATC PEPE_0545 603306 - 602575 - | Short-chain alcohol dehydrogenase of unknown specificity PEPE_0546 603387 - 603854 + | transcriptional regulator TERM 714 604168 - 604142 - f 70 -7.3 -3.57144 | gap 1, opp_overlap 604137 604142 GGTGGTACCGCGAAA GTCCTTCGTCCC TTCT GGGAGGA-GGAC TTTTTTATTTGTACC TERM 715 604142 - 604168 + F 100 -9.5 -5.72622 | gap 1, opp_overlap 604142, overlap 604137 GGTGGTACCGCGAAA GTCCTTCGTCCC TTCT GGGA-GGAGGAC TTTTTTATTTGTACC asnC 604220 - 605614 + | asparaginyl-tRNA synthetase TERM 716 605672 - 605620 - T 100 -14.5 -3.17392 | opp_overlap 605620 605635, overlap 605635 TAGTTTCTAATTTAA TCGTTAAAATAAAAAGCACCCAATC ACA GATTGGATGCTTTTTTATTTAACCA TCTTATAATTTAAAA TERM 717 605620 - 605672 + T 91 -12.3 -3.3771 | opp_overlap 605620 605635, overlap 605635 TAGTTTCTAATTTAA TCGTTAAAATAAAAAGCACCCAATC ACA GATTGGATGCTTTTTTATTTAACCA TCTTATAATTTAAAA TERM 718 605635 - 605657 + T 100 -10.6 -5.63517 | opp_overlap 605635 605620, overlap 605620 TCGTTAAAATAAAAA GCACCCAATC ACA GATTGGATGC TTTTTTATTTAACCA TERM 719 605657 - 605635 - T 100 -12.8 -5.45802 | opp_overlap 605620 605635, overlap 605620 TCGTTAAAATAAAAA GCACCCAATC ACA GATTGGATGC TTTTTTATTTAACCA PEPE_0548 606102 - 605662 - | acetyltransferase PEPE_0549 606879 - 606127 - | AraC family transcriptional regulator TERM 720 606268 - 606282 + g 76 -2.9 -5.38839 | AGTGATTAGTAGTTT TTGAA CTTTT TTCAA TTTTATTTTTGTGTA TERM 721 606821 - 606837 + g 74 -5.9 -4.65933 | overlap 606822 GAGCCGATATCAGAT TCTAGTT GAA AACTAGG TTTGTTTTCCCAGTA PEPE_0550 606986 - 609229 + | pyridine nucleotide-disulphide oxidoreductase PEPE_0551 609241 - 609441 + | sugar phosphate permease PEPE_0552 609484 - 610545 + | glycerol-3-phosphatase transporter TERM 722 610602 - 610649 + T 95 -11.6 -3.86944 | opp_overlap 610602 610613, overlap 610613 ATATTATTATAATCA GCAACTAAAAACACATTCTGCA TATT TTCAGAATGTGTTTTTAGTTTA TTTAATCCTTCTACC TERM 723 610649 - 610602 - T 86 -11.6 -2.8751 | opp_overlap 610602 610613, overlap 610613 ATATTATTATAATCA GCAACTAAAAACACATTCTGCA TATT TTCAGAATGTGTTTTTAGTTTA TTTAATCCTTCTACC PEPE_0553 610666 - 610583 - | hypothetical protein TERM 724 610613 - 610638 + g 91 -9.1 -5.13137 | opp_overlap 610613 610602, overlap 610602 ATCAGCAACTAAAAA CACATTCTGCA TATT TTCAGAATGTG TTTTTAGTTTATTTA TERM 725 610638 - 610613 - G 91 -9.1 -4.90869 | opp_overlap 610602 610613, overlap 610602 ATCAGCAACTAAAAA CACATTCTGCA TATT TTCAGAATGTG TTTTTAGTTTATTTA PEPE_0554 611283 - 610660 - | multidrug ABC transporter TERM 726 611664 - 611627 - H 83 -9.5 -3.89226 | overlap 611625 611646 TACATAAAAATAAGA CTTTTATATATTATGAA AATA TTCACAATATATAAATG AAAATCATTAGTAAC PEPE_0555 611746 - 612234 + | hypothetical protein TERM 727 612247 - 612270 + F 100 -7.5 -5.40072 | TAGCACCATTATTCC GAGGAGAGA CTTAGT TCTCTCTTC TTTTTTTGAAAAGAG TERM 728 613084 - 613054 - g 86 -7.7 -4.98672 | gap 1, opp_overlap 613073, overlap 613057 CCTAAAAATATAAAA GCA-GGTCAATACA AGCT TGTTTTGACCATGC AACATGGAAAAGATC TERM 729 613080 - 613057 - g 70 -8.2 -3.33187 | opp_overlap 613073, overlap 613054 AAAAATATAAAAGCA GGTCAATACA AGCT TGTTTTGACC ATGCAACATGGAAAA PEPE_0556 612292 - 613263 + | cell surface protein TERM 730 613304 - 613279 - T 100 -11.9 -4.27316 | opp_overlap 613279 TTTTTTAACCCAAAA GAAGGCTCGCC GTTA AGCGAACCTTC TTTTTATTTGTCGTC TERM 731 613279 - 613304 + T 100 -9 -5.40464 | opp_overlap 613279 TTTTTTAACCCAAAA GAAGGCTCGC CGTTAA GCGAACCTTC TTTTTATTTGTCGTC PEPE_0557 613523 - 613308 - | hypothetical protein TERM 732 613777 - 613802 + H 91 -8.3 -5.055 | opp_overlap 613777 613772 TTGTTGAAACCAAAA CCATCCTTCTG TCTA CAAAAGGGTGG TTTTTTCGACATTAA TERM 733 613802 - 613777 - H 85 -8.3 -4.54727 | opp_overlap 613777, overlap 613772 TTGTTGAAACCAAAA CCATCCTTCTG TCTA CAAAAGGGTGG TTTTTTCGACATTAA PEPE_0558 613850 - 614647 + | hydroxyethylthiazole kinase PEPE_0559 614651 - 615466 + | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PEPE_0560 615463 - 616113 + | thiamine monophosphate synthase TERM 734 616248 - 616258 + G 83 -6.8 -5.10497 | ATGGTCTACGTTGAA CAGG ATA CCTG TTTTTTAGATGCCTT PEPE_0561 616125 - 616799 + | putative transcription activator TERM 735 617348 - 617328 - g 85 -11.9 -2.50816 | overlap 617327 TTGCCATCGATGAAG CCCACTGTA TTT CACAGTGGG GGCATGATTTTCGAC PEPE_0562 616919 - 618673 + | ATP-dependent DNA helicase RecQ TERM 736 618668 - 618693 + F 91 -5.5 -5.80364 | CGAAATTATCAAGAA GCTTAGTATTT GTTA AAGTGCTGAGC TTTTTTTGTTAGAAT TERM 737 618867 - 618907 + G 70 -6.2 -4.27584 | opp_overlap 618873 618874 618877, overlap 618877 TGTGCAACAGACATT TCGAAACGGAGTTAGTCG GGTAA CGACTAACTTAAATTCGA TTTTGGATTCAAACT TERM 738 618877 - 618897 + G 78 -9.8 -3.2352 | opp_overlap 618874 618873 618877, overlap 618867 ACATTTCGAAACGGA GTTAGTCG GGTAA CGACTAAC TTAAATTCGATTTTG TERM 739 618897 - 618877 - g 74 -9.8 -2.64981 | opp_overlap 618877 618867, overlap 618874 618873 ACATTTCGAAACGGA GTTAGTCG GGTAA CGACTAAC TTAAATTCGATTTTG TERM 740 619020 - 619008 - g 81 -3.5 -5.61881 | TGTTAAAAACAAAAA TTTAT CGA ATAAA TACTACTACAGTTAT TERM 741 619134 - 619115 - g 86 -10.8 -4.11216 | CGGGGATTGTTAAAA TTGTTCCG GGAG CGGAACAA GGCTGGCTAAATCAT PEPE_0563 618763 - 619464 + | Zn-dependent protease TERM 742 619490 - 619465 - f 78 -9.1 -3.52317 | opp_overlap 619465, overlap 619461 GGAGAAACTAAGTAA GAGCTACTAAT GCAA ATTAGGAGCTC TTTTATTTTGTTACA TERM 743 619465 - 619490 + F 95 -9.1 -5.27476 | opp_overlap 619465 619461 GGAGAAACTAAGTAA GAGCTACTAAT GCAA ATTAGGAGCTC TTTTATTTTGTTACA TERM 744 619662 - 619647 - g 80 -2.6 -5.52986 | gap 1, overlap 619649 ACTGTATGAAAAAAA CACTAAC GTG GTTAG-G AGTGGCGGTTGGTTC TERM 745 619661 - 619649 - g 72 -6.3 -4.40552 | overlap 619647 TGTATGAAAAAAACA CTAAC GTG GTTAG GAGTGGCGGTTGGTT TERM 746 619843 - 619819 - g 89 -12.3 -3.27475 | opp_overlap 619812, overlap 619817 TTCTTCAGTAGAAGA CTCAGCAACTT TAA AAGTTGCTAAG AGTTCCAATTTAGAT PEPE_0564 619637 - 620764 + | Beta-lactamase class C related penicillin binding protein PEPE_0565 620780 - 621565 + | capsular polysaccharide biosynthesis protein PEPE_0566 621575 - 622306 + | tyrosine-protein kinase PEPE_0567 622306 - 623097 + | capsular polysaccharide biosynthesis protein TERM 747 623156 - 623171 + G 83 -7.6 -4.57073 | opp_overlap 623156 623154 ACAAGCTCAAAATCA GCGATA CGTT TATCGC TTTTTCAAGAGGATG PEPE_0568 623109 - 623762 + | lipopolysaccharide synthesis sugar transferase PEPE_0569 623791 - 624573 + | lipopolysaccharide biosynthesis glycosyltransferase PEPE_0570 624623 - 625735 + | glycosyltransferase TERM 748 625824 - 625813 - g 73 -3 -5.21459 | AAAAAGAAAAATAAA TACT TGCC AGTA AACGAATCGAATGAA PEPE_0571 625738 - 626736 + | glycosyltransferase PEPE_0572 626775 - 627791 + | hypothetical protein PEPE_0573 627933 - 629096 + | polysaccharide polymerase TERM 749 629265 - 629251 - g 83 -7.8 -4.69027 | overlap 629239 629252 AAAGTGATCGAAAAA CGCGAC CAC GTCGCA GGAAATATTTACACT TERM 750 629264 - 629252 - g 74 -9.1 -3.40331 | overlap 629239 629251 AAGTGATCGAAAAAC GCGAC CAC GTCGC AGGAAATATTTACAC PEPE_0574 629155 - 630273 + | UDP-galactopyranose mutase TERM 751 631147 - 631130 - g 76 -2.7 -5.38321 | overlap 631131 AAAGATTATAAAAAA TTACATG AATA CATGTAT ACATCTGGTGATTTT PEPE_0575 630302 - 631726 + | PST family polysaccharide transporter TERM 752 631777 - 631795 + G 91 -9.6 -5.0133 | TTTCTATTGTTATCC CCATCTAC AAT GTGGATGG TTTTTTAGAAAGATG TERM 753 632259 - 632237 - g 76 -5.7 -4.97402 | opp_overlap 632237 632242, overlap 632242 632256 TAAAATGTATAAAAA GAAAATTCT AGATG AGAATTCTC TTCACTTTGATGAAA TERM 754 632254 - 632242 - g 75 -2 -5.35224 | opp_overlap 632237 632242, overlap 632237 TGTATAAAAAGAAAA TTCT AGATG AGAA TTCTCTTCACTTTGA PEPE_0576 631749 - 632717 + | glycosyltransferase-like protein TERM 755 632962 - 632987 + G 76 -2.7 -5.42514 | gap 1 TGTTACTAATCGAAA TACT-GTATGTG TTT CATATGCCAGTA TTTTTTGCTTTATCA PEPE_0577 632823 - 633827 + | fucose 4-O-acetylase related acetyltransferase TERM 756 633859 - 633894 + F 100 -8.5 -5.45802 | opp_overlap 633859 TATAGAATTTAAAAA GCGAAATTATTGTGG TATTTT TCATAGTAATTTCGC TTTTTATTTTAGAAA PEPE_0578 634316 - 634621 + | cellobiose-specific PTS system IIB component PEPE_0579 634637 - 635863 + | phosphotransferase system cellobiose-specific component IIC PEPE_0580 635895 - 636245 + | cellobiose-specific PTS system IIA component TERM 757 636852 - 636832 - g 73 -8.3 -3.61468 | opp_overlap 636835, overlap 636835 GGTTAACCAAATTAA CATGGTTCA GGT TGAACCTTG GCTTTCAGTCGGAGT TERM 758 636835 - 636849 + G 72 -8.6 -3.29324 | opp_overlap 636832 636835 TAACCAAATTAACAT GGTTCA GGT TGAACC TTGGCTTTCAGTCGG PEPE_0581 636245 - 637699 + | Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase TERM 759 637732 - 637708 - f 74 -8.7 -3.27212 | opp_overlap 637708, overlap 637706 637705 637711 AATTTAATAAAATGA TAAGTTGTTCT TTA AGAACAGCTTA TTTTATAACTTGAGG TERM 760 637708 - 637732 + F 100 -10.9 -4.4715 | opp_overlap 637706 637705 637708 637711 AATTTAATAAAATGA TAAGTTGTTCT TTA AGAACAGCTTA TTTTATAACTTGAGG PEPE_0582 637756 - 639633 + | transcriptional antiterminator TERM 761 639651 - 639678 + T 100 -13.6 -5.85011 | opp_overlap 639651 ATTTATATAAAAAAA TAGCGAAAAGGG ATTT TCCTTTTCGCTA TTTTTTTAATTTTTA TERM 762 639678 - 639651 - T 100 -12.9 -5.72616 | opp_overlap 639651 ATTTATATAAAAAAA TAGCGAAAAGG GATTTT CCTTTTCGCTA TTTTTTTAATTTTTA PEPE_0583 640205 - 639684 - | glycopeptide antibiotics resistance protein PEPE_0584 641562 - 640240 - | amino acid transporter TERM 763 641669 - 641647 - R 76 -6.3 -4.69214 | opp_overlap 641646 641647 TATCTAACAAATAAA TCACCTTTC TAGCT GGAAGGTGA ATTTAATATTTAGCT TERM 764 641647 - 641669 + r 72 -8.5 -3.00239 | opp_overlap 641647, overlap 641646 TATCTAACAAATAAA TCACCTTTC TAGCT GGAAGGTGA ATTTAATATTTAGCT PEPE_0585 642604 - 641672 - | transcriptional regulator TERM 765 641891 - 641875 - G 70 -5.1 -4.63218 | TGTGTTTTAAGAAAA GCTCTTT ACC AAAGGGC GTTAACCGGCATTTG TERM 766 642620 - 642650 + H 78 -9.1 -3.56562 | opp_overlap 642626, overlap 642626 TTGCTAATCTCCTAT TTAAAAGGTGCCA TGTTT TGGCGCCTTTTTA TTATATACTCGGTTT TERM 767 642626 - 642644 + H 93 -8.1 -5.25699 | opp_overlap 642626, overlap 642620 ATCTCCTATTTAAAA GGTGCCA TGTTT TGGCGCC TTTTTATTATATACT PEPE_0586 642693 - 643334 + | Acyl carrier protein phosphodiesterase PEPE_0587 643413 - 644186 + | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) TERM 768 644186 - 644229 + T 100 -6.1 -5.86332 | opp_overlap 644180 644190, overlap 644190 TGAACAAACCAACTA AAAAGAGTTGTAGGCAACC GAACGG GGTTACTCACAACTCTTTA TTTTTTTTAGATTCA TERM 769 644225 - 644190 - T 95 -9.1 -4.95957 | opp_overlap 644186 644190, overlap 644180 CAAACCAACTAAAAA GAGTTGTAGGCAACC GAACGG GGTTACTCACAACTC TTTATTTTTTTTAGA TERM 770 644190 - 644225 + T 93 -6.9 -5.33985 | opp_overlap 644180 644190, overlap 644186 CAAACCAACTAAAAA GAGTTGTAGGCAACC GAACGG GGTTACTCACAACTC TTTATTTTTTTTAGA PEPE_0588 644579 - 644217 - | hypothetical protein PEPE_0589 644755 - 645762 + | dehydrogenase related protein TERM 771 646934 - 646924 - g 81 -5.4 -5.27477 | overlap 646925 ACTTTAACCAAAAAA TCAG CTC CTGA ACAAAAATCACAAGC PEPE_0590 645769 - 647085 + | superfamily II DNA/RNA helicase TERM 772 647216 - 647202 - g 95 -5.7 -5.80248 | GAACATACAAAAAAA TCGCA TACTG TGCGA AACACGATTTTAATC PEPE_0591 647178 - 648206 + | transcriptional regulator PEPE_0592 648229 - 648468 + | hypothetical protein TERM 773 648480 - 648517 + F 100 -8 -5.46657 | gap 1, opp_overlap 648480 ATAGGGTTAGGAAAA CTCTAAAATTTGGCG TAACTTAAC CGCCA-ATTTTAGAG TTTTTTGTTAAGATG TERM 774 648517 - 648480 - f 83 -8 -4.26344 | gap 1, opp_overlap 648480 ATAGGGTTAGGAAAA CTCTAAAATTTGGCG TAACTTAAC CGCCA-ATTTTAGAG TTTTTTGTTAAGATG PEPE_0593 648774 - 649022 + | hypothetical protein TERM 775 649124 - 649170 + F 100 -13.2 -4.12738 | overlap 649131 TTTTTACAGTCCTAA CCGAAAAGCCATTTGATCCAAT GTT GTTGGGCTAGATGGCTTTTTGG TTTAATTTGATATAA TERM 776 649131 - 649163 + F 82 -6.3 -5.05577 | overlap 649124 AGTCCTAACCGAAAA GCCATTTGATCCAAT GTT GTTGGGCTAGATGGC TTTTTGGTTTAATTT TERM 777 649190 - 649216 + F 100 -10.3 -5.85244 | opp_overlap 649190 ATTTGATATAAAAAA TCACTCAATCT AATTA AGATTGGGTGA TTTTTTGTTTTGGTT TERM 778 649216 - 649190 - f 100 -8.1 -5.37043 | opp_overlap 649190 ATTTGATATAAAAAA TCACTCAATCT AATTA AGATTGGGTGA TTTTTTGTTTTGGTT PEPE_0595 649596 - 650573 + | guanosine 5'-monophosphate oxidoreductase TERM 779 650615 - 650578 - T 89 -7.9 -5.05782 | gap 1, overlap 650580 ATGTATTGTAAAAAA GA-GTGTGAGCGAAAC TTGGCTG GTTTCGCTCATACATC TCCAACACCAAAATC TERM 780 650612 - 650580 - T 95 -10.7 -4.15748 | overlap 650578 GTATTGTAAAAAAGA GTGTGAGCGAAAC TTGGCTG GTTTCGCTCATAC ATCTCCAACACCAAA TERM 781 650691 - 650639 - T 100 -7.9 -5.61824 | opp_overlap 650652 CAAAATCTAAAAAAA TAACTCAACTTAAGCGCAAATCT GAACTAA AGGTTTGCGCTTATACTGGGTTA ACCAGAAAAAAGGCA TERM 782 650652 - 650678 + T 76 -8.8 -3.44319 | opp_overlap 650639 AATAACTCAACTTAA GCGCAAATCT GAACTAA AGGTTTGCGC TTATACTGGGTTAAC TERM 783 650731 - 650703 - T 100 -10.3 -5.37345 | opp_overlap 650704, overlap 650704 GTTAACCAGAAAAAA GGCATCAATCGCA ATT TGCGACCGATGCT TTTTTTAATTAATTA TERM 784 650730 - 650704 - T 100 -13.8 -3.81322 | opp_overlap 650704, overlap 650703 TTAACCAGAAAAAAG GCATCAATCGCA ATT TGCGACCGATGC TTTTTTTAATTAATT TERM 785 650704 - 650730 + T 100 -9.4 -5.66868 | opp_overlap 650704 650703 TTAACCAGAAAAAAG GCATCAATCGCA ATT TGCGACCGATGC TTTTTTTAATTAATT PEPE_0596 651988 - 650750 - | PepS aminopeptidase TERM 786 652212 - 652185 - g 76 -10.6 -2.52543 | ACCGGTTTGAACCCA TCACGGTGGTGA CTGG CCAGCACCGTGA AATGCTCGACCAAGT PEPE_0597 652082 - 653194 + | UDP-N-acetylglucosamine 2-epimerase TERM 787 653278 - 653223 - T 93 -10 -4.38927 | opp_overlap 653222 653223 TTTCGATATAATAAA GGAGCTGTGACTA-AGCTACGATAAC TTGTCG GTTATC-TAGCAGCTGTCACAGCTCC CTTTATATTATTAAT TERM 788 653223 - 653278 + T 74 -8.5 -3.20437 | opp_overlap 653223, overlap 653222 TTTCGATATAATAAA GGAGCTGTGAC-TAAGCTACGATAACT TGTC GGTTATC-TAGCAGCTGTCACAGCTCC CTTTATATTATTAAT PEPE_0598 653751 - 653296 - | flavodoxin TERM 789 653646 - 653701 + g 70 -8.2 -3.34089 | overlap 653645 TTTGTGAAATTTCAG TTTCATCGACTTCAACGCCGAGGTCT TCTA GGGCTTCGGTGATGATGTCGGCGCAA TCTTCATTGTTACCA PEPE_0599 653845 - 654621 + | hypothetical protein PEPE_0600 654724 - 655278 + | hypothetical protein TERM 790 655284 - 655304 + F 89 -7.6 -4.96848 | opp_overlap 655284 TACTCGATAAAAAAA GGAGGTGT GCATA ACACTTCC TTTTTGTGTAAAAAA TERM 791 655304 - 655284 - f 87 -5.4 -5.626 | opp_overlap 655284 TACTCGATAAAAAAA GGAGGTGT GCATA ACACTTCC TTTTTGTGTAAAAAA PEPE_0601 655360 - 656490 + | permease PEPE_0602 656566 - 656970 + | glycerol-3-phosphate cytidylyltransferase TERM 792 657014 - 656980 - f 71 -6.7 -4.00038 | gap 1, opp_overlap 656981, overlap 656981 656984 GATTAGGACTACAAA CTAAGATTGGAAT-GT CTAG ACGATTCCAATCTTAT TTTTTAGAGAGAAAG TERM 793 656981 - 657013 + F 100 -10.2 -5.00616 | gap 1, opp_overlap 656980 656981 656984 ATTAGGACTACAAAC TAAGATTGGAAT-GT CTAG ACGATTCCAATCTTA TTTTTTAGAGAGAAA TERM 794 657013 - 656981 - f 81 -10.2 -2.99541 | gap 1, opp_overlap 656981, overlap 656980 656984 ATTAGGACTACAAAC TAAGATTGGAAT-GT CTAG ACGATTCCAATCTTA TTTTTTAGAGAGAAA TERM 795 657010 - 656984 - f 73 -7.5 -3.6363 | gap 1, opp_overlap 656981, overlap 656981 656980 AGGACTACAAACTAA GATTGGAAT-GT CTAG ACGATTCCAATC TTATTTTTTAGAGAG prfC 657038 - 658606 + | peptide chain release factor 3 TERM 796 658625 - 658646 + F 77 -3 -5.54079 | opp_overlap 658625, overlap 658631 CTAAATCTTTCTAAA TTAACACC TCAAAT GGGGTTAA TTTTTTAGTTTTTAA PEPE_0604 658712 - 660886 + | phosphoglycerol transferase/alkaline phosphatase superfamily protein TERM 797 660895 - 660925 + F 100 -6.8 -5.7946 | opp_overlap 660895 660893 TAAGTAACTTAAAGA CTGAGAAGAGACCT TTA GGGGTGCTTCTCAG TTTTTTTATTAAGAG PEPE_0605 660954 - 661799 + | permease PEPE_0606 661799 - 662161 + | hypothetical protein TERM 798 662208 - 662167 - T 100 -20.5 -5.60993 | opp_overlap 662170, overlap 662170 TCGCGGATAAAAAAA GAAGAGGTTAGGTAAACCA TAAT TGGTTTACCTAACCTCTTT TTATTATTTAATCTT TERM 799 662170 - 662205 + T 100 -22.2 -5.39905 | opp_overlap 662167 662170 CGGATAAAAAAAGAA GAGGTTAGGTAAACCA TAAT TGGTTTACCTAACCTC TTTTTATTATTTAAT TERM 800 662205 - 662170 - T 100 -22.2 -4.89054 | opp_overlap 662170, overlap 662167 CGGATAAAAAAAGAA GAGGTTAGGTAAACCA TAAT TGGTTTACCTAACCTC TTTTTATTATTTAAT PEPE_0607 664282 - 662216 - | ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones PEPE_0608 664640 - 664828 + | hypothetical protein PEPE_0609 664974 - 665240 + | phosphocarrier protein HPr PEPE_0610 665240 - 666964 + | phosphoenolpyruvate--protein phosphotransferase TERM 801 666984 - 667010 + F 100 -8.8 -5.60689 | gap 1, opp_overlap 666987 AAGCAAACTATTTTA GAACCGCTGAC CTTAGT GTC-GCGGTTC TTTTTTATTCTCTAG TERM 802 667323 - 667298 - g 79 -7.7 -4.35682 | gap 1, overlap 667295 TTACAATTAAAAGAA CCCATCGGAATT GGT AACTC-GATGGG AGCAGCAGTATTGTG TERM 803 667754 - 667744 - g 76 -5.4 -4.90013 | TAATGTAATGAAAAA TGTG GGG CACA TTCCGATGGCAGAGG PEPE_0611 667037 - 667810 + | alpha/beta fold family hydrolase TERM 804 668045 - 668090 + G 79 -8.5 -4.11216 | gap 1, opp_overlap 668043 668047 668053, overlap 668047 AGGTCGATACCAATG TATACGAACGGAACA-TCTTTA GGT TTACGAGTGTTCCGTTCGTATC TTTTACAGATCGGAG TERM 805 668047 - 668088 + G 83 -11.1 -3.65542 | gap 1, opp_overlap 668043 668047 668053, overlap 668045 GTCGATACCAATGTA TACGAACGGAACA-TCTTTA GGT TTACGAGTGTTCCGTTCGTA TCTTTTACAGATCGG TERM 806 668088 - 668047 - g 78 -11.1 -2.58714 | gap 1, opp_overlap 668047 668045, overlap 668043 668053 GTCGATACCAATGTA TACGAACGGAACA-TCTTTA GGT TTACGAGTGTTCCGTTCGTA TCTTTTACAGATCGG PEPE_0612 667900 - 669075 + | 1,2-diacylglycerol 3-glucosyltransferase PEPE_0613 669125 - 670141 + | glycosyltransferase TERM 807 671013 - 671024 + G 72 -7.2 -3.88731 | GGGGGAGCGGGGGGA GCCG AATA CGGC TTTAGTGTCATCTTC PEPE_0614 670155 - 671189 + | integral membrane protein TERM 808 671177 - 671204 + F 100 -14.4 -6.06723 | opp_overlap 671183 CCGCGTAAAAGTAGT TAAAAACGAGTG ATTT CACTCGTTTTTA TTTTTTTTTCAAAAA TERM 809 671198 - 671183 - f 90 -9 -4.7329 | opp_overlap 671177 AAAAGTAGTTAAAAA CGAGTG ATTT CACTCG TTTTTATTTTTTTTT TERM 810 671423 - 671413 - f 77 -4 -5.41746 | opp_overlap 671413 AATTGTTTAAAAAAA CTTT TAA AAAG TTGTTGACAATAATT TERM 811 671851 - 671868 + F 82 -8.5 -4.09864 | opp_overlap 671851 671849 671847 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 812 671868 - 671851 - f 74 -8.5 -3.18386 | opp_overlap 671851, overlap 671849 671847 ATACCGTATAACAGA GAAAACC GCAT GGTTTTC TTTTAAAAGATGGCT TERM 813 673200 - 673181 - f 72 -9.2 -2.65808 | opp_overlap 673184 673187, overlap 673178 673193 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 814 673448 - 673467 + F 85 -8 -4.57912 | opp_overlap 673452, overlap 673452 CCCGCTATTCTCCAT TAAACAAC TAAG GTTGTTTA TTCTTTTGTTCTTTG TERM 815 673452 - 673463 + F 70 -4.4 -4.76233 | opp_overlap 673452, overlap 673448 CTATTCTCCATTAAA CAAC TAAG GTTG TTTATTCTTTTGTTC TERM 816 673629 - 673613 - f 75 -9.5 -2.86185 | opp_overlap 673612, overlap 673610 AAACTCAATTAATCA CTTTACC GTA GGTAAAG ATAGGTTAAGTTAGG TERM 817 673927 - 673908 - f 95 -12.2 -3.66803 | opp_overlap 673907 673906 CGGGAAGAGCCCAAA CCAGGAAG CTTG CTTCCTGG GGTTGTAGGACTGAA TERM 818 676927 - 676948 + F 77 -8.8 -3.73775 | GAGCCTGTCACGGCT CATAGCAC AAATTA GTGCTATG TTTCATAAAAGTAAA TERM 819 678625 - 678587 - f 79 -2.7 -5.73339 | gap 1, opp_overlap 678596, overlap 678591 678596 678599 ACAAGTAGAAAAAAA CAATTAAAACATCTTATT TTAG AATAAGGTGTTTTT-TTG TATATAAAAATAATT TERM 820 678596 - 678617 + F 100 -6.7 -5.76633 | opp_overlap 678591 678587 678596 678599 AAAAAACAATTAAAA CATCTTATT TTAG AATAAGGTG TTTTTTTGTATATAA TERM 821 679210 - 679194 - g 71 -6.7 -4.07618 | TTTCCAAGAATTAAA TGAAAAT CCA ATTTTCA CCGATGTTGCAGTTT PEPE_0639 678838 - 680571 + | pyruvate oxidase TERM 822 680588 - 680621 + T 100 -12.7 -5.5454 | gap 1, opp_overlap 680588 TTAAATGCTAAAAAA CGGGCGAAAAAGTCAA AGA TTGA-TTTTTCGTCCG TTTTTATTTGTTTAA TERM 823 680621 - 680588 - T 100 -10.5 -5.12707 | gap 1, opp_overlap 680588 TTAAATGCTAAAAAA CGGGCGAAAAAGTCAA AGA TTGA-TTTTTCGTCCG TTTTTATTTGTTTAA PEPE_0640 681372 - 680641 - | hypothetical protein PEPE_0641 681545 - 682735 + | S-adenosylmethionine synthetase TERM 824 682746 - 682789 + F 89 -12 -3.24032 | overlap 682749 682751 ACTAAAAAATTTGAT TAATGGCTGTGTTGATGTCT AAAC GGATATTAACACGGCTATTA TATTGGTTGAGAGGT TERM 825 682749 - 682786 + F 80 -9.3 -3.76048 | overlap 682746 682751 AAAAAATTTGATTAA TGGCTGTGTTGATGTCT AAAC GGATATTAACACGGCTA TTATATTGGTTGAGA TERM 826 682751 - 682784 + F 80 -9.7 -3.45909 | overlap 682749 682746 AAAATTTGATTAATG GCTGTGTTGATGTCT AAAC GGATATTAACACGGC TATTATATTGGTTGA TERM 827 683397 - 683408 + G 73 -4.4 -4.90869 | opp_overlap 683397 TAGCAAGAAAATTGA CTAC CTAG GTAG TTTTTGGTTAATGGT PEPE_0642 682810 - 684276 + | major facilitator superfamily permease TERM 828 684279 - 684325 + T 91 -8.3 -5.05782 | gap 1, opp_overlap 684282, overlap 684282 AGATAATATTTAAAA AAATGGATTTAGAA-CCTAGCT GAGA GGCTAGCCTTCTAAATCCATTA TTTTTTACGCTCAAT TERM 829 684322 - 684282 - T 100 -9.3 -5.52909 | gap 1, opp_overlap 684279 684282 TAATATTTAAAAAAA TGGATTTAGAA-CCTAGC TGAGAG GCTAGCCTTCTAAATCCA TTATTTTTTACGCTC TERM 830 684282 - 684322 + T 93 -10 -4.63089 | gap 1, opp_overlap 684282, overlap 684279 TAATATTTAAAAAAA TGGATTTAGAA-CCTAGCT GAGA GGCTAGCCTTCTAAATCCA TTATTTTTTACGCTC PEPE_0643 684886 - 684323 - | SAM-dependent methyltransferase PEPE_0644 685511 - 684879 - | membrane-associated phospholipid phosphatase TERM 831 685792 - 685820 + H 100 -14.8 -6.22802 | opp_overlap 685800 CGCGGAACTTTTCGT CCTAAGGATTCT TTTTT AGAATCCTTAGG TTTTTTTTTATCGAC TERM 832 686190 - 686201 + G 79 -4.4 -5.20333 | opp_overlap 686190 CTTTAAGCGTCAAAT CCAA TCAC TTGG TTTTTCTTATGACTG leuS 685858 - 688275 + | leucyl-tRNA synthetase TERM 833 688321 - 688290 - f 71 -8.1 -3.22917 | gap 1, opp_overlap 688290, overlap 688288 688281 ACTAAATCAAAAGTA GGGTCCA-GATGTT TTAAC AGCATCGTGGACCC TTTTTTTGTAGAAAA TERM 834 688290 - 688321 + F 100 -10.3 -5.60993 | gap 1, opp_overlap 688290 688288 688281 ACTAAATCAAAAGTA GGGTCCA-GATGTT TTAAC AGCATCGTGGACCC TTTTTTTGTAGAAAA TERM 835 688804 - 688816 + G 74 -7.7 -4.03234 | CAATTAATGAGTTTG CGTTG GGG CAACG TTTGTATAAGCGGGG PEPE_0646 688479 - 690164 + | polysaccharide transporter PEPE_0647 690173 - 690892 + | ribosomal small subunit pseudouridine synthase A TERM 836 690927 - 690896 - T 100 -14 -4.66833 | opp_overlap 690896 GTTGAAGGTTAAAAA TAAGCTACTATGAC AAAA ATCATAGTAGCTTA TTTTTTTGAAGTTGT TERM 837 690896 - 690927 + T 100 -13.3 -5.48303 | opp_overlap 690896 GTTGAAGGTTAAAAA TAAGCTACTATGA CAAAAA TCATAGTAGCTTA TTTTTTTGAAGTTGT PEPE_0648 691754 - 690915 - | sugar kinase TERM 838 692041 - 692013 - g 71 -4.5 -4.7497 | opp_overlap 692026 CTCATGTAGTAAAAA GGCAACACGCTAA CAC TGAGAGTGTTTCC CTTGGCTTTGGTGTT PEPE_0649 691889 - 692341 + | universal stress protein UspA-like nucleotide-binding protein TERM 839 692355 - 692411 + T 100 -17.8 -4.29845 | gap 2, opp_overlap 692355 AAATGATAAACAAAA TGACCTCAATTGTCG-GC-ACTTTAGTT TTA AACTAGAGTGGAACGACAATTGAGGTCA TTTTAAATTAGATTG TERM 840 692411 - 692355 - T 100 -15.6 -5.06089 | gap 2, opp_overlap 692355 AAATGATAAACAAAA TGACCTCAATTGTCG--GCACTTTAGTT TTA AACTAGAGTGGAACGACAATTGAGGTCA TTTTAAATTAGATTG PEPE_0650 693078 - 692419 - | deoxynucleoside kinase PEPE_0651 693323 - 694144 + | HAD superfamily hydrolase PEPE_0652 694149 - 694349 + | hypothetical protein PEPE_0653 694346 - 694561 + | hypothetical protein PEPE_0654 694562 - 694840 + | hypothetical protein TERM 841 694883 - 694844 - T 88 -8.8 -4.40605 | gap 1, opp_overlap 694851, overlap 694851 694855 ATTGATAAATAGAAA CGA-CTAAGAAACAGGATT GTA AATCCTGTTTCTTTTTTCG ATACTTAATTGATTT TERM 842 694851 - 694875 + T 100 -14.5 -5.12617 | opp_overlap 694851 694844 694855 AATAGAAACGACTAA GAAACAGGATT GTA AATCCTGTTTC TTTTTTCGATACTTA TERM 843 694875 - 694851 - T 100 -14.5 -3.37141 | opp_overlap 694851, overlap 694844 694855 AATAGAAACGACTAA GAAACAGGATT GTA AATCCTGTTTC TTTTTTCGATACTTA TERM 844 694871 - 694855 - T 90 -9.5 -4.30833 | opp_overlap 694851, overlap 694851 694844 GAAACGACTAAGAAA CAGGATT GTA AATCCTG TTTCTTTTTTCGATA PEPE_0655 695164 - 694940 - | hypothetical protein TERM 845 695451 - 695481 + H 79 -2.7 -5.82172 | opp_overlap 695451 ATAAATTAAAGGAAA CTAGAAATTAATT GAGAA ATTTAACTTCTAG TTTTTTTGTGTTGGT TERM 846 695931 - 695943 + G 72 -7.7 -3.75332 | CAGACAGCCTTTAGT GGTCA GTG TGACC TTTAAGTTGGGGGCT PEPE_0657 695602 - 696240 + | carbonic anhydrase PEPE_0658 696829 - 696320 - | hypothetical protein TERM 847 697018 - 697030 + H 70 -4.1 -5.10163 | overlap 697019 GAAATCACGATTAAT TGTTG ATG CAACG TTTTATTTTCCAGTT PEPE_0659 697166 - 699046 + | asparagine synthase (glutamine-hydrolyzing) murE 699062 - 700585 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 848 701035 - 701054 + G 79 -7.9 -4.35926 | opp_overlap 701034 GCACAATATGAAAGT GGTGAGA AATTCA TCTCACC TTTTGAATTTCCAGT PEPE_0661 700585 - 701841 + | ATP-grasp protein TERM 849 702067 - 702080 + G 75 -2.3 -5.37345 | opp_overlap 702068, overlap 702068 TTCAAGAACAAAGCA AGCTG AATC CAGCC TTTTTTGTAATTGCC TERM 850 702318 - 702333 + G 72 -4.8 -4.79223 | AAAGCAATTCAGGAT TTAACT AGCA AGTTAA TTTTTGATGATATCA PEPE_0662 701847 - 702554 + | aspartate racemase TERM 851 702599 - 702558 - f 82 -6.1 -5.09521 | gap 1, opp_overlap 702563, overlap 702563 CTAAGAAAGTAAAAA TAAAAGTTGGGATTAAACTA AAC CAGTTTG-TCCCAACTTTTT ACTATGATTAACTTG TERM 852 702563 - 702594 + F 87 -7.5 -4.84274 | gap 1, opp_overlap 702563 702558 AAAGTAAAAATAAAA GTTGGGATTAAACT AAACC AGTTTG-TCCCAAC TTTTTACTATGATTA TERM 853 702594 - 702563 - f 86 -6 -5.36689 | gap 1, opp_overlap 702563, overlap 702558 AAAGTAAAAATAAAA GTTGGGATTAAACTA AAC CAGTTTG-TCCCAAC TTTTTACTATGATTA TERM 854 703330 - 703344 + G 91 -7.2 -5.28942 | TTGCAACAGATGGAT CGTTAA ATT TTAACG TTTTTGTTTGGAATG PEPE_0663 702624 - 703436 + | DNA-entry nuclease TERM 855 703467 - 703445 - f 85 -9.3 -4.05229 | opp_overlap 703445, overlap 703438 AAATTAAAGATTAAA CGATTAATC GATAT GATTAATCG TTTTTTTATTACGTT TERM 856 703445 - 703467 + F 100 -10 -5.83226 | opp_overlap 703438 703445 AAATTAAAGATTAAA CGATTAATCG ATA TGATTAATCG TTTTTTTATTACGTT PEPE_0664 703568 - 705013 + | amino acid transporter TERM 857 705084 - 705051 - T 79 -8.2 -4.12397 | opp_overlap 705051 TTAGAGAATGAGAAA GGGAAATCCAACTC GTGGCG GAGTTGGGTTTCTC TTTTTTTATGATTCA TERM 858 705051 - 705084 + T 100 -12.6 -5.71983 | opp_overlap 705051 TTAGAGAATGAGAAA GGGAAATCCAACTC GTGGCG GAGTTGGGTTTCTC TTTTTTTATGATTCA TERM 859 705249 - 705275 + T 88 -6.6 -5.21236 | opp_overlap 705249 TATTTAAACAAGAAA CCCTACTATC AACTAAA GATAGCAGGG TTTTTATTATAAGTT TERM 860 705275 - 705249 - T 89 -8.8 -4.58585 | opp_overlap 705249 TATTTAAACAAGAAA CCCTACTATC AACTAAA GATAGCAGGG TTTTTATTATAAGTT PEPE_0666 705573 - 705289 - | hypothetical protein PEPE_0667 706463 - 705651 - | HAD superfamily hydrolase PEPE_0668 706672 - 707517 + | Aryl-alcohol dehydrogenase related enzyme TERM 861 707718 - 707749 + F 100 -13.2 -5.63517 | overlap 707708 TACCGCGGGAAATCT CGTCTCTTACATTT TTAC AAATGTAAGGGGCG TTTTTTATTTCGCAG argS 707778 - 709466 + | arginyl-tRNA synthetase TERM 862 709523 - 709552 + F 84 -3.7 -5.86976 | gap 1 ATTTATAAATGAGGA CCGCGTTCAAAA TGATGTT TTTTGGAC-CGG TTTTTTATTTTCTCA PEPE_0670 709732 - 710403 + | cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase PEPE_0671 710426 - 710884 + | ArgR family transcriptional regulator PEPE_0672 710987 - 713140 + | membrane carboxypeptidase (penicillin-binding protein) PEPE_0673 713205 - 713549 + | hypothetical protein TERM 863 713599 - 713631 + F 81 -4.3 -5.42514 | gap 2, opp_overlap 713599 TGTGCTATAAAAAAT TGGGACTGTAAGACA AAAAA TGTC--GCAGTCCCA TTTTTTAGTTTCTGG PEPE_0674 713664 - 714887 + | DNA repair exonuclease TERM 864 715085 - 715075 - g 83 -6.8 -5.09895 | overlap 715062 TATGTACCTAAAAAA GCAC AAG GTGC AGCAGGGTACGGTGG TERM 865 715486 - 715468 - g 83 -8.9 -4.28323 | ATCAAGCAATATAAA GAAGCTG TTGAT CAGCTTC AAGCTGATAAGGCCA TERM 866 715810 - 715800 - g 73 -4 -5.05228 | ACCAAATGAGAAAAA CAAT GTA ATTG ATATAACTAAATTAG PEPE_0675 714877 - 717453 + | DNA repair ATPase PEPE_0676 717468 - 718415 + | HD-superfamily hydrolase TERM 867 718407 - 718455 + T 100 -15.8 -4.04927 | gap 1, opp_overlap 718408 718409 718420, overlap 718408 718420 TTTTATAAACCAGAA AGC-AAATAAAAAAGATGAACGA GAAA TCGTTCATCTTTTTTATTTAGCA TTATTTAGTACTTGA TERM 868 718408 - 718454 + T 100 -19.3 -3.02233 | gap 1, opp_overlap 718408 718409 718420, overlap 718407 718420 TTTATAAACCAGAAA GC-AAATAAAAAAGATGAACGA GAAA TCGTTCATCTTTTTTATTTAGC ATTATTTAGTACTTG TERM 869 718454 - 718408 - T 100 -19.3 -4.17701 | gap 1, opp_overlap 718408 718407 718420, overlap 718409 718420 TTTATAAACCAGAAA GC-AAATAAAAAAGATGAACGA GAAA TCGTTCATCTTTTTTATTTAGC ATTATTTAGTACTTG TERM 870 718452 - 718409 - T 100 -19.4 -3.09897 | opp_overlap 718408 718407 718420, overlap 718408 718420 TTATAAACCAGAAAG CAAATAAAAAAGATGAACGA GAAA TCGTTCATCTTTTTTATTTA GCATTATTTAGTACT TERM 871 718441 - 718420 - T 100 -11.7 -5.74086 | opp_overlap 718408 718407 718420, overlap 718409 718408 AAAGCAAATAAAAAA GATGAACGA GAAA TCGTTCATC TTTTTTATTTAGCAT TERM 872 718420 - 718441 + T 100 -11.7 -5.64421 | opp_overlap 718420 718409 718408, overlap 718408 718407 AAAGCAAATAAAAAA GATGAACGA GAAA TCGTTCATC TTTTTTATTTAGCAT prsA 719343 - 718456 - | peptidylprolyl isomerase PEPE_0678 719815 - 719450 - | hypothetical protein PEPE_0679 720249 - 719818 - | diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases TERM 873 720348 - 720360 + H 75 -4.9 -5.03145 | GTTATAATTTATGGA GATTT TCA AAATC TTTTTTAGACGATTG PEPE_0680 720387 - 721124 + | ABC-type multidrug transport system, ATPase component TERM 874 721205 - 721215 + G 72 -5.4 -4.68593 | ATGATCATCTGATTT TAGC GTT GCTA TTTTTCGGTGGTGGA TERM 875 721442 - 721465 + G 70 -4.7 -4.5493 | overlap 721439 CATTAATCTCAGTGG TATTGCCAA CTTTGA TTGGTAATA TTATTTTATTTCCAT PEPE_0681 721117 - 722316 + | ABC transporter permease TERM 876 722322 - 722308 - f 87 -4.4 -5.71712 | CGTTATATAAAAAAA TTAAAT TAA ATTTAA GAGGTAATTATGCGA TERM 877 722809 - 722789 - g 76 -6.9 -4.28432 | opp_overlap 722788 722787 AAGTTGAATTTAAAA CGGATAATC AAG GATTATTCG AATATTCACTTTACA PEPE_0682 722332 - 722970 + | S-adenosylmethionine-dependent methyltransferase TERM 878 722979 - 723019 + T 77 -7.8 -3.97088 | gap 1, opp_overlap 722986, overlap 722982 722984 722986 TTTCTAAAGTGAAAA ATAA-AAAGAGTCTGAGGA TTTT TCCTCAGACTCTCTATTAG TTTGCTATTATCGAC TERM 879 722982 - 723015 + T 89 -11.1 -3.62191 | opp_overlap 722986, overlap 722979 722984 722986 CTAAAGTGAAAAATA AAAAGAGTCTGAGGA TTTT TCCTCAGACTCTCTA TTAGTTTGCTATTAT TERM 880 722984 - 723013 + T 100 -13.7 -3.37523 | opp_overlap 722986, overlap 722982 722979 722986 AAAGTGAAAAATAAA AAGAGTCTGAGGA TTTT TCCTCAGACTCTC TATTAGTTTGCTATT TERM 881 722986 - 723011 + T 100 -16.3 -3.24202 | opp_overlap 722986, overlap 722984 722982 722979 AGTGAAAAATAAAAA GAGTCTGAGGA TTTT TCCTCAGACTC TCTATTAGTTTGCTA TERM 882 723011 - 722986 - T 100 -16.3 -5.63236 | opp_overlap 722986 722984 722982 722979 AGTGAAAAATAAAAA GAGTCTGAGGA TTTT TCCTCAGACTC TCTATTAGTTTGCTA PEPE_0683 723353 - 723027 - | hypothetical protein PEPE_0684 723436 - 724068 + | EMAP domain-containing protein TERM 883 725228 - 725238 + G 77 -8.2 -3.94188 | ATTTCAGATCCTAAG GCCG CAT CGGC TTCTTTAAAATGGGT TERM 884 725341 - 725329 - g 73 -2.6 -5.29716 | GCAATATAATAAAAA GGCC GAAAA AGCC CAAGATTACGCCAAT PEPE_0685 724082 - 725998 + | DNA segregation ATPase FtsK/SpoIIIE related protein TERM 885 726501 - 726518 + G 72 -5.6 -4.67982 | overlap 726501 726499 726502 CTTTGTTTTTGAAGC TGACGA ATATCG TCGTCA TTTTATTGCATACCA murC 726040 - 727350 + | UDP-N-acetylmuramate--L-alanine ligase PEPE_0687 727452 - 728150 + | integral membrane protein, interacts with FtsH TERM 886 728209 - 728177 - f 100 -10 -4.74787 | gap 1, opp_overlap 728177 ATAAATACAAATAAA CCGAAGGTCAATCTT TTTC ACG-TTGACCTTCGG TTTTTGGTATCATTA TERM 887 728177 - 728209 + F 100 -11.4 -4.84274 | opp_overlap 728177 ATAAATACAAATAAA CCGAAGGTCAATCT TTTTC ACGTTGACCTTCGG TTTTTGGTATCATTA TERM 888 728785 - 728769 - g 85 -7.3 -5.07486 | TATGTCGAAGAAAAA TTAGGCG TAA CACCTAA ACAAATTATTGACAT PEPE_0688 728250 - 730913 + | DNA polymerase I TERM 889 731033 - 731023 - g 72 -5.4 -4.66609 | TACGTTATTCAAAAA TGGT CTC ACCA AAAGCGGAAATTTTT PEPE_0689 730926 - 731753 + | formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase PEPE_0690 731758 - 732348 + | dephospho-CoA kinase PEPE_0691 732380 - 732853 + | transcriptional regulator NrdR TERM 890 734076 - 734056 - g 81 -3.3 -5.64321 | overlap 734058 AGAACAAAAGAAAAA TACGAACAA TAA TTATTCGAA AAATCGGCGTACGAT TERM 891 734074 - 734058 - g 72 -5.9 -4.41779 | overlap 734056 AACAAAAGAAAAATA CGAACAA TAA TTATTCG AAAAATCGGCGTACG PEPE_0692 732854 - 734224 + | replicative DNA helicase loader DnaB PEPE_0693 734227 - 735156 + | primosomal protein DnaI TERM 892 735416 - 735389 - f 100 -12.8 -2.93818 | opp_overlap 735390, overlap 735386 735380 AATAAATGACAATCA CGTCCCTGGTAT TTTT ATACCAGGGACT TTTTTTGTACATAAA TERM 893 735390 - 735415 + F 100 -16.3 -5.64274 | opp_overlap 735389 735386 735380 ATAAATGACAATCAC GTCCCTGGTAT TTTT ATACCAGGGAC TTTTTTTGTACATAA TERM 894 735942 - 735927 - g 70 -6.2 -4.31085 | CATACCAAGCTAAAA TCGTTA AGCG TAACGA AAAAAATGGCAAAGT PEPE_0694 735449 - 737395 + | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase TERM 895 737412 - 737448 + F 93 -6.2 -5.63504 | gap 1, opp_overlap 737412 ATAGTTTAATTAAAA TAGGATTTTTAATGGTG TGAA TATCATTAAAA-TCCTA TTTTTTTGTAGGCTT PEPE_0695 737548 - 739287 + | membrane signal transduction histidine kinase PEPE_0696 739293 - 740024 + | response regulator TERM 896 740072 - 740093 + F 80 -5.2 -5.26875 | opp_overlap 740072, overlap 740079 ACCTATTCTTAGAAA TTCTCAAC TCAATC GTTGAGGA TTTTTTAATTAAAAA PEPE_0697 740253 - 740657 + | putative effector of murein hydrolase LrgA PEPE_0698 740659 - 741387 + | putative effector of murein hydrolase TERM 897 741485 - 741465 - f 80 -6.2 -4.86033 | gap 1, opp_overlap 741465 741464, overlap 741468 AAACGTTGAGAAAAA GC-AGAAGC CACC GCTTCTCGC CTTGTAACTTAAGTT TERM 898 741570 - 741549 - f 100 -11.5 -4.47786 | opp_overlap 741549 AATTATCCAAACAAA GCGGGTGGC GTAT GCCATCCGC TTTTCTGCATTCTCG TERM 899 741549 - 741570 + F 100 -13.7 -4.49337 | opp_overlap 741549 AATTATCCAAACAAA GCGGGTGGC GTAT GCCATCCGC TTTTCTGCATTCTCG PEPE_0699 741626 - 742126 + | translation initiation factor 3 PEPE_0700 742151 - 742348 + | 50S ribosomal protein L35P rplT 742405 - 742758 + | 50S ribosomal protein L20 TERM 900 742791 - 742826 + T 81 -4.1 -5.59962 | gap 1, opp_overlap 742791 ATTAATAAATAAAAA GGATTGG-AACAAAAC AATGA GTTTTGGAACCAATCC TTTTTATTTATTTTC TERM 901 742826 - 742791 - T 77 -4.1 -5.48514 | gap 1, opp_overlap 742791 ATTAATAAATAAAAA GGATTGG-AACAAAAC AATGA GTTTTGGAACCAATCC TTTTTATTTATTTTC PEPE_0702 743778 - 742852 - | NADPH:quinone reductase related Zn-dependent oxidoreductase TERM 902 744265 - 744246 - g 70 -7.2 -3.83262 | gap 1, opp_overlap 744257 744260 TAAATTGGATAAGAA CTCC-ACCA TTA TGGTTGGAG ACCAATTAATTACGG PEPE_0703 743920 - 744444 + | HAD superfamily hydrolase PEPE_0704 744445 - 745557 + | GTP-binding protein YqeH PEPE_0705 745580 - 745891 + | RNA-binding protein PEPE_0706 745908 - 746552 + | nicotinate-nucleotide adenylyltransferase PEPE_0707 746542 - 747150 + | HD superfamily NAD metabolism hydrolase PEPE_0708 747167 - 747523 + | Iojap family protein TERM 903 747914 - 747924 + G 73 -6.8 -4.33928 | opp_overlap 747913 747914 ATGAGCACTTAAAAT CTGG CGG CCAG TTTATCTTTGACGTG PEPE_0709 747523 - 748260 + | SAM-dependent methyltransferase PEPE_0710 748266 - 749366 + | nucleotidyltransferase PEPE_0711 749424 - 749963 + | metal-binding protein rpmF 750013 - 750195 + | 50S ribosomal protein L32 TERM 904 750206 - 750236 + F 100 -14.2 -5.88197 | opp_overlap 750206 750209 750215 ACTAATTTGTTAAAA GAAGTAAAAGGAGC CTA GGTCCTTTTACTTC TTTTTTTGTGTTTAA TERM 905 750236 - 750206 - f 100 -14.2 -4.11751 | opp_overlap 750206, overlap 750209 750215 ACTAATTTGTTAAAA GAAGTAAAAGGAGC CTA GGTCCTTTTACTTC TTTTTTTGTGTTTAA TERM 906 750233 - 750209 - f 93 -10.1 -4.18164 | opp_overlap 750206, overlap 750206 750215 AATTTGTTAAAAGAA GTAAAAGGAGC CTA GGTCCTTTTAC TTCTTTTTTTGTGTT PEPE_0713 750429 - 751847 + | 6-phosphogluconate dehydrogenase TERM 907 751895 - 751863 - f 91 -12.1 -3.40134 | opp_overlap 751868, overlap 751868 AAATTAGTTTAAATA GAAAAGCGATAACCG TTA CGGCTACCGCTTTTT TTATATGGATTATTA TERM 908 751890 - 751868 - f 100 -12 -4.79451 | opp_overlap 751868, overlap 751863 AGTTTAAATAGAAAA GCGATAACCG TTA CGGCTACCGC TTTTTTTATATGGAT TERM 909 751868 - 751890 + F 100 -7.6 -5.72616 | opp_overlap 751863 751868 AGTTTAAATAGAAAA GCGATAACCG TTA CGGCTACCGC TTTTTTTATATGGAT TERM 910 751954 - 751938 - f 75 -8.1 -3.63068 | overlap 751946 TGAGACTAGGTCAAA TTAAGTG AGC CACTTAA GTAGAGGCTAGGCTT PEPE_0714 752282 - 752968 + | DNA-binding response regulator TERM 911 753988 - 753976 - g 73 -4.1 -5.14965 | overlap 753977 ATGCCGATGAAAAAA CGAAC GTC GTTCA ATTAGTAAATCAAGT PEPE_0715 752970 - 754451 + | Signal transduction histidine kinase TERM 912 754493 - 754456 - T 90 -3.8 -5.93252 | gap 3, opp_overlap 754456, overlap 754467 GTGAAAAATAAAAAA TCCTTGGAAAA---TGAGT TTT ACTCAAAATTTTCCAAGGA TTTTTTTGGTATTTA TERM 913 754456 - 754493 + T 81 -3.8 -5.66989 | gap 3, opp_overlap 754456 754467 GTGAAAAATAAAAAA TCCTTGGAAAA---TGAGT TTT ACTCAAAATTTTCCAAGGA TTTTTTTGGTATTTA PEPE_0716 755462 - 754512 - | preprotein translocase subunit YidC PEPE_0717 755814 - 755542 - | acylphosphatase PEPE_0718 756000 - 756767 + | rRNA methylase PEPE_0719 756865 - 757374 + | HD superfamily hydrolase PEPE_0720 757392 - 757724 + | transcriptional regulator TERM 914 757971 - 757951 - f 70 -3.9 -5.0133 | opp_overlap 757941 757951 TACCGCGTTAAAAAA CGTCCCT TTCTAGG AGGGGCG TTTTTTTATTTGGAG TERM 915 757951 - 757971 + F 100 -7.5 -5.95539 | opp_overlap 757951, overlap 757941 TACCGCGTTAAAAAA CGTCCCTTT CTA GGAGGGGCG TTTTTTTATTTGGAG TERM 916 758050 - 758029 - g 76 -7.4 -4.27465 | GAGAAGTTAAAAGAA CTTGAAGA AAAAGG TCTTCAAG AAATTAGCGTTGCTA PEPE_0721 757981 - 759048 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 917 759066 - 759056 - g 79 -4 -5.46657 | GAGGTTAATAAAAAA TGAA ACT TTCA TACAAGTGGTTATCT TERM 918 759695 - 759676 - g 73 -2.8 -5.19251 | CAAGACGAACAAAAA TCAGCTGA TACT TTAGCCGA TCAAATAAAAGTTGA PEPE_0722 759055 - 761484 + | phenylalanyl-tRNA synthetase beta subunit TERM 919 762472 - 762462 - g 71 -3.2 -5.09895 | TATGCAGTTAAAAAA TCCG CAA CAGA AGACTTAACTCAATC PEPE_0723 761571 - 762737 + | periplasmic solute-binding protein TERM 920 762842 - 762832 - g 73 -4 -5.08824 | opp_overlap 762832 CTGTTAGTCAAAAAA TTCT TGA AGAA TTACATGGTCATTCG PEPE_0724 762753 - 763409 + | uridine kinase PEPE_0725 763425 - 763907 + | transcription elongation factor GreA TERM 921 763929 - 763955 + T 100 -10.3 -5.7946 | opp_overlap 763929 ATCATATTAAAAAAA GCTTTTCACTT CTTAT GAGTGAAAAGC TTTTTTTGTTGGAGC TERM 922 763955 - 763929 - T 100 -9.6 -5.59357 | opp_overlap 763929 ATCATATTAAAAAAA GCTTTTCACT TCTTATG AGTGAAAAGC TTTTTTTGTTGGAGC PEPE_0726 766549 - 763934 - | hypothetical protein TERM 923 764684 - 764700 + g 79 -2.3 -5.63374 | overlap 764697 TAAATTAGATTGATA TTGCAAA GGA TTTCCAA TTTTTTTGGTATTAC TERM 924 767986 - 768004 + G 76 -10.4 -2.71268 | overlap 767983 TGACGCTTCGAGAGC GTTAGAAG TTT CTTCTAAC TCATATATGATGCAA PEPE_0727 766682 - 768772 + | cell division protein FtsI/penicillin-binding protein 2 rpmG 768871 - 769020 + | 50S ribosomal protein L33 TERM 925 769032 - 769064 + F 79 -2.8 -5.82281 | gap 2, opp_overlap 769041, overlap 769038 769041 ATAATCGTAATTAAG GCTGGAA--GACTGCA ATT TGCTGTCGCTTCTAGC TTTTTTTATATATTT PEPE_0729 769102 - 769665 + | 5-formyltetrahydrofolate cyclo-ligase PEPE_0730 769695 - 770384 + | membrane-associated serine protease PEPE_0731 770417 - 770629 + | hypothetical protein PEPE_0732 770647 - 771609 + | glucokinase TERM 926 771626 - 771616 - f 70 -4 -4.99043 | TTTGCATAAATAAAA CAAA AAT TTTG GAGATGAGAGAAACA TERM 927 771914 - 771892 - g 91 -9.2 -4.98531 | opp_overlap 771891 771892 771894 TTCGCAAATGAAAAA CAGAACCCAA GAA TTGCGTTCTG ATTTACCGGTTTATT TERM 928 771892 - 771914 + G 72 -9.2 -2.79175 | opp_overlap 771892, overlap 771891 771894 TTCGCAAATGAAAAA CAGAACCCAA GAA TTGCGTTCTG ATTTACCGGTTTATT PEPE_0733 771641 - 772060 + | rhodanese-related sulfurtransferase TERM 929 772096 - 772064 - T 100 -11.5 -4.946 | opp_overlap 772064 ACTAAATATTAAAAA GAGATTGGGTTAA AATAGAA TTAACCCAACCTC TTTTTTATTTGTGTA TERM 930 772064 - 772096 + T 100 -9.3 -5.76237 | opp_overlap 772064 ACTAAATATTAAAAA GAGATTGGGTTAA AATAGAA TTAACCCAACCTC TTTTTTATTTGTGTA PEPE_0734 772290 - 772114 - | hypothetical protein PEPE_0735 772373 - 773107 + | glycerophosphoryl diester phosphodiesterase PEPE_0736 773109 - 774041 + | tRNA delta(2)-isopentenylpyrophosphate transferase PEPE_0737 774025 - 775281 + | cystathionine beta-lyase family protein PEPE_0738 775362 - 775727 + | glutamine synthetase repressor TERM 931 777026 - 777014 - g 70 -7.7 -3.56821 | ATCACATTTTCCAAA GCTTC CTC GAAGC TAAGAAGTTAGAATG PEPE_0739 775762 - 777102 + | L-glutamine synthetase TERM 932 777151 - 777120 - f 89 -10.3 -3.85242 | opp_overlap 777120 AAATATCTATAATAA GAGTTATAACACG GTTAAT CGTGTTGTAACTC TTTTTTTGTGAAGAA TERM 933 777120 - 777151 + F 100 -13.2 -5.60993 | opp_overlap 777120 AAATATCTATAATAA GAGTTATAACACGG TTAA TCGTGTTGTAACTC TTTTTTTGTGAAGAA PEPE_0740 777251 - 778126 + | hypothetical protein TERM 934 778373 - 778393 + G 74 -9.1 -3.55563 | opp_overlap 778363 778391, overlap 778374 TTTAATTTTTATGAC TCGCTTAAT TGA ATTAAGCGG TTTAAAAACTAAACT TERM 935 778374 - 778392 + G 76 -10.4 -2.73124 | opp_overlap 778363 778391, overlap 778373 TTAATTTTTATGACT CGCTTAAT TGA ATTAAGCG GTTTAAAAACTAAAC PEPE_0741 778119 - 779036 + | hypothetical protein PEPE_0742 779046 - 779585 + | dUTPase TERM 936 779636 - 779593 - f 100 -19.3 -3.95424 | opp_overlap 779596 779598 779603, overlap 779596 779603 ATTACTAATAGGAAA TAACAGAAAACCCAAAACC TGCTCT GGTTTTGGGTTTTCTATTA ATTAATAAAACCGTA TERM 937 779596 - 779633 + F 100 -14.4 -3.39895 | opp_overlap 779596 779593 779603, overlap 779598 779603 ACTAATAGGAAATAA CAGAAAACCCAAAACC TGCTCT GGTTTTGGGTTTTCTA TTAATTAATAAAACC TERM 938 779633 - 779596 - f 100 -16.6 -4.09455 | opp_overlap 779596 779598 779603, overlap 779593 779603 ACTAATAGGAAATAA CAGAAAACCCAAAACC TGCTCT GGTTTTGGGTTTTCTA TTAATTAATAAAACC TERM 939 779598 - 779631 + F 100 -17 -3.27029 | opp_overlap 779596 779593 779603, overlap 779596 779603 TAATAGGAAATAACA GAAAACCCAAAACC TGCTCT GGTTTTGGGTTTTC TATTAATTAATAAAA TERM 940 779603 - 779626 + F 100 -11.1 -4.73864 | opp_overlap 779603 779596 779593, overlap 779598 779596 GGAAATAACAGAAAA CCCAAAACC TGCTCT GGTTTTGGG TTTTCTATTAATTAA TERM 941 779626 - 779603 - f 100 -11.1 -4.84673 | opp_overlap 779598 779596 779603, overlap 779596 779593 GGAAATAACAGAAAA CCCAAAACC TGCTCT GGTTTTGGG TTTTCTATTAATTAA TERM 942 779659 - 779647 - f 87 -7.7 -4.80178 | TATTAATTAATAAAA CCGTA AAA TACGG TCAATAATTGAAGAT PEPE_0743 779890 - 780117 + | hypothetical protein TERM 943 780127 - 780170 + T 95 -12 -3.73072 | opp_overlap 780128 780133, overlap 780128 780133 AAATAATTAATATAG ATAAAAGAAGCTAAATCGTT AAAA ATCGGTTTAGCTTCTTTTAG TTTAATGGAGAAATT TERM 944 780169 - 780128 - T 100 -13.3 -3.1682 | opp_overlap 780128 780127 780133, overlap 780133 AATAATTAATATAGA TAAAAGAAGCTAAATCGTT AAAA ATCGGTTTAGCTTCTTTTA GTTTAATGGAGAAAT TERM 945 780128 - 780169 + T 100 -15.5 -2.83522 | opp_overlap 780128 780133, overlap 780127 780133 AATAATTAATATAGA TAAAAGAAGCTAAATCGTT AAAA ATCGGTTTAGCTTCTTTTA GTTTAATGGAGAAAT TERM 946 780133 - 780164 + T 100 -11 -4.58773 | opp_overlap 780133 780128, overlap 780128 780127 TTAATATAGATAAAA GAAGCTAAATCGTT AAAA ATCGGTTTAGCTTC TTTTAGTTTAATGGA TERM 947 780164 - 780133 - T 89 -8.8 -4.68124 | opp_overlap 780128 780127 780133, overlap 780128 TTAATATAGATAAAA GAAGCTAAATCGTT AAAA ATCGGTTTAGCTTC TTTTAGTTTAATGGA PEPE_0744 780460 - 780257 - | hypothetical protein TERM 948 780575 - 780602 + r 91 -7.1 -5.1485 | opp_overlap 780575, overlap 780564 ATTTAAAAATAAAAA TCACCCAATCT AATTAA AGATTGAGTGA TTTTTATGTTGCTTA TERM 949 780602 - 780575 - R 100 -9.3 -5.63236 | opp_overlap 780575 780564 ATTTAAAAATAAAAA TCACCCAATCT AATTAA AGATTGAGTGA TTTTTATGTTGCTTA TERM 950 780620 - 780638 + r 76 -7.4 -4.17316 | overlap 780613 TTTATGTTGCTTAGT GAGCGTTT GGT GAGCGCTC TTGTTTTAAAAGCCT PEPE_0745 781937 - 780798 - | integrase TERM 951 780866 - 780879 + g 81 -5.3 -5.26155 | opp_overlap 780862 780866, overlap 780862 TATCTAACCCAGCAA TGATG ATTG CATCA TTTTTATCTTTATAT TERM 952 782001 - 782014 + r 80 -5.3 -5.27476 | opp_overlap 782001 GGTATATTAAAAGAG CTACT CAAG AGTAG TTTTGTTTTGTTAAG TERM 953 782029 - 782065 + r 86 -3.8 -5.73978 | gap 1 GTTTTGTTTTGTTAA GTCACATCTTT-CTTCT TGGC GGGAGTAGGGATGTGGC TTTTTTGTTTATGCT PEPE_0746 782488 - 782084 - | hypothetical protein PEPE_0747 782983 - 782546 - | hypothetical protein PEPE_0748 783337 - 782987 - | XRE family transcriptional regulator TERM 954 783531 - 783546 + H 71 -7.6 -3.55378 | opp_overlap 783530, overlap 783530 ATTTATGAACTAAGT GTACTG AACT CAGTAC TATTTGTCAATAACT PEPE_0749 783594 - 783803 + | hypothetical protein TERM 955 783849 - 783831 - g 89 -4 -5.83226 | AATGGAAGAAAAAAA TAAAAATT TAG AATCTTTA AATGAAAAAACTCTT TERM 956 783893 - 783860 - g 100 -9.7 -5.37593 | opp_overlap 783860, overlap 783852 CTTTAAATGAAAAAA CTCTTCAACACCAGC TGCA ACTGATATCGAAGAG TTCTGAAAAAGCCAA PEPE_0750 783817 - 783996 + | hypothetical protein PEPE_0751 784126 - 783986 - | hypothetical protein PEPE_0752 784187 - 784912 + | Phage anti-repressor protein PEPE_0753 784915 - 785259 + | hypothetical protein PEPE_0754 785259 - 785357 + | hypothetical protein TERM 957 785405 - 785384 - f 77 -2.9 -5.67711 | GAAACAAAATAAAAA GCCCGCTAC GGCA ATAGTGGAC TCAAATAAATATTCA PEPE_0755 785441 - 785548 + | hypothetical protein PEPE_0756 785535 - 785996 + | hypothetical protein TERM 958 786587 - 786569 - g 74 -6 -4.66609 | GATTCCATTGAAAAA TTGCAGGA AGA TACTGCAA TCGGATTAATTGAAT PEPE_0757 785993 - 786649 + | hypothetical protein PEPE_0758 786652 - 787050 + | single-stranded DNA-binding protein PEPE_0759 787088 - 787972 + | hypothetical protein PEPE_0760 787956 - 789203 + | replicative DNA helicase PEPE_0761 789206 - 789622 + | hypothetical protein PEPE_0762 789619 - 790038 + | Holliday junction resolvase PEPE_0763 790025 - 790234 + | hypothetical protein PEPE_0764 790247 - 790477 + | hypothetical protein PEPE_0765 790491 - 790631 + | hypothetical protein PEPE_0766 790646 - 791017 + | N-acetylmuramoyl-L-alanine amidase PEPE_0767 791061 - 791525 + | hypothetical protein PEPE_0768 791537 - 791830 + | hypothetical protein PEPE_0769 791832 - 791996 + | hypothetical protein PEPE_0770 791997 - 792563 + | hypothetical protein PEPE_0771 792563 - 792751 + | hypothetical protein TERM 959 792823 - 792807 - g 70 -5.8 -4.33258 | ATTTTTAAACATAAA GGCAGA GTTGT TCCGCC ACCAAATACAAAAAT PEPE_0772 792744 - 792911 + | hypothetical protein TERM 960 793040 - 793022 - f 88 -7.4 -5.07652 | overlap 793033 GCTTGGAAAATAAAA TCGGCAGA AAA TCTGCAGA AAGCCAGCAGAAAAA PEPE_0773 793070 - 793366 + | hypothetical protein PEPE_0774 793366 - 793707 + | hypothetical protein PEPE_0775 793710 - 794129 + | hypothetical protein PEPE_0776 794201 - 794374 + | hypothetical protein TERM 961 794398 - 794379 - f 100 -6.4 -5.72622 | TGTACAAATAAAAAA GCCACAGC CTCC GCTATGAC AGTATTATATACAAA PEPE_0777 794441 - 794899 + | hypothetical protein PEPE_0778 795080 - 795322 + | hypothetical protein PEPE_0779 795368 - 795508 + | hypothetical protein PEPE_0780 795647 - 796228 + | hypothetical protein TERM 962 796246 - 796271 + F 80 -5.4 -5.21236 | opp_overlap 796246 AATTTAACTATTTAA GCCACTCAAT TAATAC GTTGTGTGGC TTTTTATTGTCCATT PEPE_0781 796309 - 796806 + | hypothetical protein TERM 963 797593 - 797616 + G 90 -8.2 -4.91511 | opp_overlap 797593 TTATGGAACTCAAAA CCCTACAGTA TTTC TATTGTGGGG TTTTTATAATGGCGT PEPE_0782 796796 - 798067 + | Phage terminase large subunit TERM 964 798449 - 798478 + G 100 -9.3 -5.63517 | opp_overlap 798449 GAATGAGATTAGCAA GCAAGCGGATGTC TACG GACGTTCGATTGC TTTTTTATTTCAAAA PEPE_0783 798075 - 799478 + | Phage portal protein, SPP1 Gp6-like PEPE_0784 799459 - 800424 + | Phage Mu protein F like protein PEPE_0785 800427 - 800642 + | hypothetical protein TERM 965 800640 - 800661 + F 100 -8.1 -5.38321 | opp_overlap 800639 800642 ATAGAAATTGAAATC TAGTATGCA GTAA TGCATGCTA TTTTTTATGCTCTTT PEPE_0786 800752 - 801363 + | hypothetical protein PEPE_0787 801378 - 802292 + | hypothetical protein PEPE_0788 802343 - 802576 + | hypothetical protein PEPE_0789 802588 - 802959 + | hypothetical protein PEPE_0790 802964 - 803272 + | hypothetical protein PEPE_0791 803265 - 803606 + | hypothetical protein TERM 966 803832 - 803860 + G 100 -8.3 -5.96219 | GGTACGCCTAAACAG CGTTTAATCATTT CAG AAATGGTTGAGCG TTTTTTTTATGCCTC PEPE_0792 803631 - 804014 + | hypothetical protein PEPE_0793 804026 - 804610 + | hypothetical protein PEPE_0794 804687 - 804965 + | hypothetical protein PEPE_0795 805105 - 805446 + | hypothetical protein PEPE_0796 805593 - 805871 + | hypothetical protein PEPE_0797 805855 - 808875 + | minor tail protein gp26-like PEPE_0798 808875 - 809639 + | hypothetical protein TERM 967 810115 - 810100 - g 70 -6.2 -4.27001 | opp_overlap 810102 CAACAAAAAAGATAA CACTTT ACGC AAAGTG GATTACCAGACCACT PEPE_0799 809639 - 812599 + | enterolysin A. metallo peptidase. MEROPS family M23B TERM 968 812887 - 812873 - g 90 -4.3 -5.76949 | opp_overlap 812873 TATTGGCAAAAAAAA TCAAG AAACA CTTGA TAAATTTGATAGTGA PEPE_0800 812583 - 812996 + | hypothetical protein TERM 969 813732 - 813711 - g 70 -8.1 -3.29591 | overlap 813706 ACCATTGAAAGTGAA TTGGCTATT TTAA AACAGCCAA TCTACGTGGAACAAA PEPE_0801 813000 - 814829 + | phosphodiesterase PEPE_0802 814841 - 815581 + | hypothetical protein PEPE_0803 815581 - 815922 + | hypothetical protein PEPE_0804 815919 - 816074 + | hypothetical protein TERM 970 816061 - 816077 + F 95 -5.8 -5.7827 | GAGAAGATTACGTAG CGCCTG AAACA TAGGCG TTTTTTATTTCTCTT PEPE_0805 816137 - 816739 + | hypothetical protein TERM 971 816728 - 816744 + F 85 -3 -6.09196 | AAAGAATTGACTAAA GATATC AAATA GGTATC TTTTTTTATTTTGGG TERM 972 816818 - 816846 + G 86 -5.4 -5.64421 | TTGCAATCTTATATG GCAATCGTTGAT GATAA ATTGATGATTGC TTTTTTGTTTGCAGT PEPE_0806 816782 - 817183 + | Phage-related holin (lysis protein) TERM 973 817194 - 817213 + G 85 -2.8 -5.80364 | overlap 817198 AATAAGCTAAAATGG GTTGTTGC GATT GCAATGGC TTTTTTTATTGGAGT PEPE_0807 817167 - 818483 + | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) TERM 974 818578 - 818605 + F 100 -10.7 -5.80951 | opp_overlap 818578 AAACCCTTTTAAAAA GCCTATTCAGT TTAATT ACTGGATAGGC TTTTTTATTTTACAT TERM 975 818605 - 818578 - f 89 -8.5 -4.58685 | opp_overlap 818578 AAACCCTTTTAAAAA GCCTATTCAGT TTAATT ACTGGATAGGC TTTTTTATTTTACAT TERM 976 818665 - 818626 - f 85 -6.7 -4.9792 | opp_overlap 818626 TATTTTACATAAAAA TAAAAAACACTCAACCT AATTAA AGATTGGATGTTTTTTA TGGTTTGGCAGGCGT PEPE_0809 819017 - 819529 + | hypothetical protein TERM 977 819540 - 819574 + F 100 -8 -5.57396 | AATAAAAAATGGGGA CAACGAAGTAACAT TATTTAT ATGATGCTTCGTTG TTTTTTGTTGCTTAT PEPE_0810 819863 - 820492 + | TetR family transcriptional regulator PEPE_0811 820622 - 820930 + | 50S ribosomal protein L21P TERM 978 821218 - 821196 - g 74 -9.2 -3.18274 | TTGATTCGAATCGAA TGGCTCAAGT TTT ACTTGAGGCA CTTGAGATTGGATTA PEPE_0812 820952 - 821278 + | ribosomal protein rpmA 821302 - 821589 + | 50S ribosomal protein L27 TERM 979 821611 - 821637 + F 100 -10.9 -5.25656 | AAAAAGCAAATTTCA GGTCGGGACAA TAACT TTGTTCCGGCC TTTTTTAATGATTTT TERM 980 821756 - 821746 - g 72 -5.4 -4.62336 | opp_overlap 821746 ATCTGATTTTAAAAA TGGT TTG ACCA TTGAATTTGATGATA TERM 981 822062 - 822102 + G 72 -9.1 -3.33419 | opp_overlap 822078, overlap 822060 GAAGTAAGTATCGCA TTCTTTGGTACTGAAACAC TTG GTGTTGAAGTGCCTAAGAA TATTACTTTAAAAGT PEPE_0814 821714 - 822277 + | translation elongation factor P (EF-P) PEPE_0815 822295 - 822723 + | hypothetical protein PEPE_0816 822723 - 823124 + | NusB antitermination factor TERM 982 823164 - 823133 - f 100 -11.8 -5.43514 | opp_overlap 823133 AAAATAATTAAAAAA TGGTTGTGAATATC ACTT GATATTTACAACCA TTTTTAATTTGTTTA TERM 983 823133 - 823164 + F 100 -14 -5.13137 | opp_overlap 823133 AAAATAATTAAAAAA TGGTTGTGAATATC ACTT GATATTTACAACCA TTTTTAATTTGTTTA PEPE_0817 823250 - 824101 + | methenyltetrahydrofolate cyclohydrolase TERM 984 824568 - 824583 + G 81 -10.4 -3.39749 | opp_overlap 824565 824562 TTAGAGATATTATCA CGACGG TGAG CCGTCG TTATCCGATTGTTCA xseA 824102 - 825445 + | exodeoxyribonuclease VII large subunit PEPE_0819 825445 - 825681 + | exodeoxyribonuclease VII small subunit PEPE_0820 825674 - 826564 + | farnesyl-diphosphate synthase PEPE_0821 826578 - 827396 + | rRNA methylase PEPE_0822 827405 - 827863 + | ArgR family transcriptional regulator PEPE_0823 827875 - 829551 + | DNA repair ATPase PEPE_0824 829958 - 829623 - | hypothetical protein TERM 985 829738 - 829748 + g 79 -4 -5.47218 | ATATAGCCATCGATT TCAA CGA TTGA TTTTTTTAAATCCAG PEPE_0825 830254 - 830868 + | guanylate kinase PEPE_0826 830870 - 831079 + | DNA-directed RNA polymerase, subunit K/omega TERM 986 831091 - 831116 + F 100 -8.3 -5.5074 | opp_overlap 831091 ATAGAAATTATGAAA GATGGTGGAGG TTGT CCTCTAGCATC TTTTTTGTTGGATTA PEPE_0827 831191 - 832384 + | phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase PEPE_0828 832399 - 834819 + | replication restart DNA helicase PriA PEPE_0829 834842 - 835804 + | methionyl-tRNA formyltransferase PEPE_0830 835788 - 837122 + | tRNA and rRNA cytosine-C5-methylase TERM 987 837643 - 837616 - g 80 -2.8 -5.64274 | overlap 837624 CCATCCAGAAAAAAA TGTAATTACTAA AACT TTAGGAATTTCA GAACAAGCCGAAGCT PEPE_0831 837131 - 837877 + | Serine/threonine protein phosphatase TERM 988 838868 - 838858 - g 78 -3.2 -5.47159 | overlap 838861 GCTAAGAAAGAAAAA GCAC CAG ATGC TGAAGAAAGTCATAT PEPE_0832 837874 - 839397 + | serine/threonine kinase protein PEPE_0833 839408 - 840337 + | GTPase PEPE_0834 840334 - 840981 + | ribulose-5-phosphate 3-epimerase PEPE_0835 840981 - 841622 + | thiamine pyrophosphokinase TERM 989 841659 - 841637 - T 100 -9.3 -5.8901 | opp_overlap 841637 AGACAAAATAAAAAA GATTGGTTA TCAAC TAACCAATC TTTTTTTTATACGCG TERM 990 841637 - 841659 + T 100 -9.3 -5.93809 | opp_overlap 841637 AGACAAAATAAAAAA GATTGGTTA TCAAC TAACCAATC TTTTTTTTATACGCG PEPE_0836 841851 - 841666 - | 50S ribosomal protein L28P TERM 991 842030 - 842017 - H 72 -2.5 -5.47218 | TGTCACTTAAAAAAA TTTAT TAGA ATAAA TGAGTATCCTCGGTA PEPE_0837 842151 - 842513 + | hypothetical protein PEPE_0838 842541 - 844229 + | dihydroxyacetone kinase-like protein TERM 992 844236 - 844258 + F 100 -12.8 -4.98531 | opp_overlap 844233 GTTGAATAATACTTA TAGGTCGGTT ATT AGCCGACCTA TTTTTGATTTACGGA TERM 993 844550 - 844560 + G 79 -4 -5.40072 | ATCGGTAATGAGTCC GTTA TGG TAAC TTTTTTTAACCAGCC TERM 994 844889 - 844875 - g 81 -5.6 -5.20216 | opp_overlap 844886, overlap 844877 CAGATGATCAAAAAA CACGGG ACG CCCGTC GAACTGCGATGTTTG TERM 995 844887 - 844877 - g 82 -8.2 -4.22314 | opp_overlap 844886, overlap 844875 GATGATCAAAAAACA CGGG ACG CCCG TCGAACTGCGATGTT PEPE_0839 844280 - 846307 + | ATP-dependent DNA helicase RecG PEPE_0840 846324 - 847367 + | phosphate:acyl-[acyl carrier protein] acyltransferase PEPE_0841 847406 - 847648 + | Acyl carrier protein TERM 996 847659 - 847704 + F 100 -13.7 -2.81312 | gap 1, opp_overlap 847667, overlap 847667 CTTAATTTCATATAC TAAGAG-AACTCGGTGATTAAT CTA ATTGGTCACCGAGTTATTCTTA TGTGCTAAATAAATT TERM 997 847695 - 847667 - f 80 -8.9 -3.75053 | opp_overlap 847667 847659 CATATACTAAGAGAA CTCGGTGATTAAT CTA ATTGGTCACCGAG TTATTCTTATGTGCT TERM 998 847667 - 847695 + F 100 -13.3 -4.07466 | opp_overlap 847667, overlap 847659 CATATACTAAGAGAA CTCGGTGATTAAT CTA ATTGGTCACCGAG TTATTCTTATGTGCT TERM 999 848087 - 848072 - g 72 -2.4 -5.25772 | overlap 848073 AAAGGAGAAGAAAAA TCCGGC GCTC GCCAGC GCTCATCACTTCTTT PEPE_0842 847745 - 848443 + | dsRNA-specific ribonuclease TERM 1000 849474 - 849461 - g 84 -2.3 -5.75342 | CTTGTCGAAAAAAAA GCGTC TTTA GAAGC TGCCCAAGGCCAACT TERM 1001 849717 - 849702 - g 81 -3.2 -5.61913 | opp_overlap 849702 AACAAAGACAAAAAA TCCAAC TTAC GATGGA TACGTTGAATGAACA TERM 1002 851420 - 851433 + G 73 -8.1 -3.68962 | opp_overlap 851419 851414 ATTGAGGAATATGAT CGGGT TTCA ACCCG TTATAATTTCTTAAG PEPE_0843 848453 - 851983 + | condensin subunit Smc TERM 1003 852999 - 853020 + G 79 -7.3 -4.58395 | opp_overlap 852999 AACTACGGGACAAAA TGCCTTAAC ACAG GCTAAGGCA TTTTTAGAAACTACG TERM 1004 853020 - 852999 - g 86 -9.5 -4.41206 | opp_overlap 852999 AACTACGGGACAAAA TGCCTTAAC ACAG GCTAAGGCA TTTTTAGAAACTACG PEPE_0844 852001 - 853221 + | signal recognition particle-docking protein FtsY TERM 1005 853254 - 853244 - g 80 -2.6 -5.58209 | GGAAATCGAAAAAAA TAAT CGC ATTA ATAGCTTGTTGGAAT PEPE_0845 853227 - 853568 + | hypothetical protein TERM 1006 854330 - 854306 - g 71 -3.8 -4.88407 | gap 1, opp_overlap 854313 GGATTTAATGAAAAA TTAGATATTAC TGGG GTAAT-TCTAA CTAAGTTAGATGGCG PEPE_0846 853586 - 855016 + | signal recognition particle subunit FFH/SRP54 (srp54) TERM 1007 855024 - 855049 + F 100 -11.3 -5.56263 | opp_overlap 855024 855020 GACGCTAAAAATTAA GAGGTTTGGTT ATAC AACTAAACCTC TTTTTGTTTTCTAAT TERM 1008 855049 - 855024 - f 81 -9.1 -3.81926 | opp_overlap 855024, overlap 855020 GACGCTAAAAATTAA GAGGTTTGGTT ATAC AACTAAACCTC TTTTTGTTTTCTAAT rpsP 855375 - 855647 + | 30S ribosomal protein S16 TERM 1009 855661 - 855699 + F 95 -9.1 -4.96848 | gap 1, opp_overlap 855664 AGGTCATACCTGAAC GAAGGGCGTCGATAAAAC ATTA GTTTTATT-ACGGCCTTC TTTTTGTATCGGAGG PEPE_0848 855722 - 856237 + | 16S rRNA processing protein RimM PEPE_0849 856237 - 856974 + | tRNA (Guanine37-N1) methyltransferase rplS 857117 - 857476 + | 50S ribosomal protein L19 TERM 1010 857496 - 857529 + F 100 -8.3 -5.95539 | CAAATAATTAAAGAA GATGAGTTGAAATCC AAGA GGGTTTTGATTCATC TTTTTTTGTTTGCCA PEPE_0851 857707 - 857778 + | hypothetical protein TERM 1011 857886 - 857854 - T 100 -16.5 -5.46657 | opp_overlap 857854 CACTGGAATAAAAAA GGAAGTTTCTGCGTA ATT TACGGAGAAACTTCC TTTTTTTAATTTATT TERM 1012 857854 - 857886 + T 100 -16.5 -5.77856 | opp_overlap 857854 CACTGGAATAAAAAA GGAAGTTTCTGCGTA ATT TACGGAGAAACTTCC TTTTTTTAATTTATT TERM 1013 858171 - 858184 + T 84 -5.3 -5.42131 | opp_overlap 858171 858169, overlap 858179 TCCTAAAACAATATA TTCCT GTCC AGGAA TTTTTTCTGTAGTTG PEPE_0853 858594 - 858262 - | hypothetical protein TERM 1014 859416 - 859401 - g 73 -2.6 -5.24129 | gap 1 GTCGGTGATAAAAAA GTT-TGC CAA GCAGAAC TAACATTCATTGTTG PEPE_0854 859008 - 859457 + | 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 1015 859530 - 859516 - g 70 -2.8 -5.03314 | opp_overlap 859517, overlap 859517 TCTACTCCTAAAAAA GTCGTT ACT AACGAT GATTTAACTAAAATA TERM 1016 859631 - 859603 - g 80 -11.1 -3.19425 | opp_overlap 859609, overlap 859591 859590 AAGCAACGCTATCAA GCCGTTGAAGAAA CTA CTTCTTCAATGGC GATAGAAGTCGCTAA TERM 1017 859775 - 859757 - g 85 -11.8 -3.4878 | opp_overlap 859755 CTATAGTACAAGGAA GCATTGGT GCA ACCAATGC AATGGCTTTTGACAT TERM 1018 859796 - 859808 + G 74 -6.2 -4.52857 | CTTTTGACATTAGTG CCGC ATGTA GCGG TTTTGTGTACGGCAT PEPE_0855 859471 - 860430 + | 3-oxoacyl-[acyl-carrier-protein] synthase III PEPE_0856 860469 - 860708 + | Acyl carrier protein PEPE_0857 860726 - 861658 + | [Acyl-carrier-protein] S-malonyltransferase PEPE_0858 861659 - 862387 + | 3-oxoacyl-[acyl-carrier-protein] reductase PEPE_0859 862406 - 863632 + | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 1019 863683 - 863717 + G 71 -6.7 -4.19506 | gap 2, opp_overlap 863683 ACCAAATTAGATAAA TCATCATTCACGTCATT CGA AATGACG-GAA-GGTGA TTTTAGCATTAAAGT TERM 1020 863802 - 863753 - g 76 -8.9 -3.75898 | gap 2, opp_overlap 863753 863771 863794, overlap 863755 863764 AAGAAACTACTCAAA TAGTTCAAC--CAGTAGCAACGG TTAATG CCGTTGCTACTGACGTTGAAGCA ACTTCTGAAATAGCG TERM 1021 863800 - 863755 - g 77 -9.3 -3.44924 | gap 2, opp_overlap 863753 863771 863794, overlap 863753 863764 GAAACTACTCAAATA GTTCAAC--CAGTAGCAACGG TTAATG CCGTTGCTACTGACGTTGAAG CAACTTCTGAAATAG TERM 1022 863789 - 863764 - g 93 -13.4 -2.76249 | opp_overlap 863753 863771, overlap 863755 863753 CAAATAGTTCAACCA GTAGCAACGG TTAATG CCGTTGCTAC TGACGTTGAAGCAAC PEPE_0860 863635 - 864075 + | biotin carboxyl carrier protein TERM 1023 864184 - 864197 + G 72 -2.4 -5.1861 | opp_overlap 864184 CTGAAAAGAAAGTTA CCAT CAATGA ATGG TTTTTTAATAATGGC PEPE_0861 864075 - 864488 + | 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase PEPE_0862 864506 - 865873 + | biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha PEPE_0863 865863 - 866693 + | acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha TERM 1024 867248 - 867268 + G 74 -9.1 -3.40498 | overlap 867246 AGGTTATGCTTCAAT CGTTTGGAA GGA TTCTAAACG TGTTATTGAAGCTTC PEPE_0864 866706 - 867473 + | acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha PEPE_0865 867490 - 868248 + | enoyl-(acyl carrier protein) reductase TERM 1025 868282 - 868261 - f 100 -10.3 -5.33026 | opp_overlap 868261 TAAGCTAAATAAAAA GATTAAGGT GGTT ACCTTAATC TTTTTTTGTATCCTC TERM 1026 868261 - 868282 + F 100 -10.3 -5.74122 | opp_overlap 868261 TAAGCTAAATAAAAA GATTAAGGT GGTT ACCTTAATC TTTTTTTGTATCCTC PEPE_0866 868404 - 868478 + | hypothetical protein TERM 1027 868577 - 868519 - f 88 -9.1 -4.15788 | gap 1, opp_overlap 868524, overlap 868506 868524 AATTTGGTTAACAAA CAAAACCACCCAATCAGAATTCAGTGCC TACT AGCATTGA-TACTGATTCGGTGGTTTTT TATATTTTGAGGAGG TERM 1028 868572 - 868524 - f 95 -9 -5.09762 | gap 1, opp_overlap 868524, overlap 868519 GGTTAACAAACAAAA CCACCCAATCAGAATTCAGTGCC TACT AGCATTGA-TACTGATTCGGTGG TTTTTTATATTTTGA TERM 1029 868524 - 868572 + F 100 -10.5 -5.63645 | gap 1, opp_overlap 868524 868519 GGTTAACAAACAAAA CCACCCAATCAGAATTCAGTGC CTACTA GCATTGA-TACTGATTCGGTGG TTTTTTATATTTTGA TERM 1030 868667 - 868644 - g 75 -8.2 -3.85092 | overlap 868630 868649 ATCACTTACATCAAA CCAAATGCAA ATGA TTGCATTAGG AGGAACCATTGGTGT TERM 1031 869167 - 869178 + G 73 -3.6 -5.03314 | TTGAGCAATCTTTGG GCTC ACGG GGGC TTTTTTACAGGTGGA PEPE_0867 868600 - 869976 + | amino acid transporter TERM 1032 870004 - 869983 - f 71 -3.1 -5.24129 | opp_overlap 869983 CGGGGTTAGAAAAAA TTCAGAA AGCTAAAG TTCTGAA GCTTTTAATATTTTA PEPE_0868 870137 - 871303 + | hydroxymethylglutaryl-CoA synthase TERM 1033 871309 - 871338 + T 100 -15.9 -5.24129 | opp_overlap 871309 AGTAAATTAAAAAAA TGGCAACTTGGGT TTAA ACCTAAGTTGCCA TTTTTTATGAGAAGA TERM 1034 871338 - 871309 - T 100 -13.7 -5.73563 | opp_overlap 871309 AGTAAATTAAAAAAA TGGCAACTTGGGT TTAA ACCTAAGTTGCCA TTTTTTATGAGAAGA PEPE_0869 871942 - 871343 - | hypothetical protein TERM 1035 871380 - 871393 + g 81 -6.7 -4.96501 | ATTTTACCGTCTTTC GCGAT AATC ATCGC TTTATTTTTGTCAGG TERM 1036 871520 - 871543 + g 75 -3.2 -5.28755 | overlap 871521 ACTCATTTGGTCAGG ATTTTCGATC AACT GATTGAAAAC TTTTTTAGTGTCTTT PEPE_0870 872650 - 872021 - | XRE family transcriptional regulator PEPE_0871 872784 - 873032 + | hypothetical protein PEPE_0872 873103 - 873324 + | hypothetical protein TERM 1037 873318 - 873359 + T 100 -12 -4.17556 | gap 1, opp_overlap 873318 873330, overlap 873329 873330 GCAAAATCAATCTAA GAAATAAAAAAA-CGTCCA TTATT TGGACGCTTTTTTTGTTTC TTTATTCGAAATGTC TERM 1038 873359 - 873318 - T 78 -9.8 -3.28783 | gap 1, opp_overlap 873318 873329 873330, overlap 873330 GCAAAATCAATCTAA GAAATAAAAAAA-CGTCCA TTATT TGGACGCTTTTTTTGTTTC TTTATTCGAAATGTC TERM 1039 873329 - 873347 + T 95 -4.5 -6.11392 | opp_overlap 873318 873330, overlap 873318 873330 CTAAGAAATAAAAAA ACGTCCA TTATT TGGACGC TTTTTTTGTTTCTTT TERM 1040 873330 - 873346 + T 83 -8 -4.21345 | opp_overlap 873318 873330, overlap 873329 873318 TAAGAAATAAAAAAA CGTCCA TTATT TGGACG CTTTTTTTGTTTCTT TERM 1041 873346 - 873330 - T 100 -8 -6.08342 | opp_overlap 873330 873329 873318, overlap 873318 TAAGAAATAAAAAAA CGTCCA TTATT TGGACG CTTTTTTTGTTTCTT PEPE_0873 873878 - 873336 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase PEPE_0874 874055 - 874810 + | O-methyltransferase PEPE_0875 874791 - 875078 + | URI-like endonuclease PEPE_0876 875199 - 876194 + | D-lactate dehydrogenase, LdhA PEPE_0877 876346 - 877128 + | SSU ribosomal protein S2P TERM 1042 877139 - 877184 + F 93 -6.9 -5.41143 | gap 1 AATAATTATCACTTA GGCTGT-CGTGATTTGAGACCT TTT AGGCCTGAGATTACGCGCGGCC TTTTTTTACGGAATC tsf 877244 - 878122 + | elongation factor Ts TERM 1043 878183 - 878150 - f 95 -10.6 -4.70659 | gap 1, opp_overlap 878150 TTGGATATTTAAAAA GCGAATTAATATGAG TTTAG CTCA-ATTAATTCGC TTTTTTGTAGGATTT TERM 1044 878150 - 878183 + F 100 -11.3 -5.28826 | gap 1, opp_overlap 878150 TTGGATATTTAAAAA GCGAATTAATATGAGT TTA GCTCA-ATTAATTCGC TTTTTTGTAGGATTT TERM 1045 878214 - 878227 + F 70 -4.5 -4.91511 | opp_overlap 878214 TACACGTAATAACAG TGTGG TTTG CCGCA TTTTTATGATAGAAT PEPE_0879 878276 - 879001 + | uridylate kinase TERM 1046 879383 - 879373 - g 72 -5.4 -4.6902 | GCAGAAGGCGAAAAA GCTA AAG TAGC AGTTCGTAATATTCG PEPE_0880 879001 - 879561 + | ribosome recycling factor TERM 1047 879574 - 879624 + F 100 -12.9 -2.93252 | gap 1, opp_overlap 879568 879579, overlap 879579 TAGTATTAACTTTTG ATAAAGCACCCCAAGAATTGTAGT GAAA ACT-CAACTTTTGGGGTGCTTTAC TGGTTATTGAAAAAT TERM 1048 879579 - 879619 + F 100 -12.8 -3.89131 | gap 1, opp_overlap 879579, overlap 879574 TTAACTTTTGATAAA GCACCCCAAGAATTGTAGT GAAA ACT-CAACTTTTGGGGTGC TTTACTGGTTATTGA TERM 1049 879619 - 879579 - f 100 -12.8 -3.87869 | gap 1, opp_overlap 879574 879579 TTAACTTTTGATAAA GCACCCCAAGAATTGTAGT GAAA ACT-CAACTTTTGGGGTGC TTTACTGGTTATTGA TERM 1050 879994 - 880018 + GF 85 -8 -4.56597 | gap 1 GTGCTAGTAAGTTGG GCGTA-AAGGT GTTA ACCTTATACGC TTTTTCGACGGAAAA PEPE_0881 879819 - 880568 + | undecaprenyl pyrophosphate synthetase TERM 1051 881287 - 881308 + GF 74 -8.7 -3.19884 | overlap 881286 GGTCGCATCTTACCA GGTCATGGA GGAA TCCTTGACC GTTTTGATAGTCTAT PEPE_0882 880537 - 881364 + | CDP-diglyceride synthetase TERM 1052 881438 - 881455 + G 77 -6.3 -4.73613 | TTTAATTTTAGTTGT TGTCCAT GAGT ATGGGCA TTTTGTTGCTGCTAA TERM 1053 882111 - 882088 - g 100 -7.6 -5.37345 | overlap 882090 TTGAAGGACAAAAAA CAGATAATTG GAGT CAATTATCTA AGGCAGTTTCAGCTC TERM 1054 882109 - 882090 - g 79 -8 -4.31563 | overlap 882088 GAAGGACAAAAAACA GATAATTG GAGT CAATTATC TAAGGCAGTTTCAGC PEPE_0883 881388 - 882650 + | peptidase RseP PEPE_0884 882678 - 884393 + | prolyl-tRNA synthetase TERM 1055 884438 - 884405 - f 100 -11.9 -4.69048 | opp_overlap 884409 884414 884436, overlap 884406 884409 ATAAAAGTAAATAAA CCAATTAAAGCTGGG GAAT CCCAGCTTTAATTAT TTGTAGCAAATATTT TERM 1056 884437 - 884406 - f 100 -15.4 -3.38988 | opp_overlap 884409 884414 884436, overlap 884405 884409 TAAAAGTAAATAAAC CAATTAAAGCTGGG GAAT CCCAGCTTTAATTA TTTGTAGCAAATATT TERM 1057 884434 - 884409 - f 100 -14.9 -3.78394 | opp_overlap 884409 884414, overlap 884406 884405 AAGTAAATAAACCAA TTAAAGCTGGG GAAT CCCAGCTTTAA TTATTTGTAGCAAAT TERM 1058 884409 - 884434 + F 100 -14.9 -4.06687 | opp_overlap 884406 884405 884409, overlap 884414 AAGTAAATAAACCAA TTAAAGCTGGG GAAT CCCAGCTTTAA TTATTTGTAGCAAAT TERM 1059 884414 - 884429 + F 95 -10.4 -4.18044 | opp_overlap 884409 884406 884405, overlap 884409 AATAAACCAATTAAA GCTGGG GAAT CCCAGC TTTAATTATTTGTAG TERM 1060 884436 - 884450 + F 78 -5.8 -4.77157 | opp_overlap 884406 884405 884438 AATCCCAGCTTTAAT TATTTG TAG CAAATA TTTTTAATGGATTAG TERM 1061 885462 - 885444 - g 74 -9.6 -3.1211 | TACGATATCATGGAA GTCGACCA CGC TGATCGAC AAGATACAGCAACTG TERM 1062 888574 - 888564 - g 74 -5.4 -4.71061 | ATTGATATTGAAAAA TCAG ATG CTGA AGAATGGTTAATTGA PEPE_0885 884487 - 888800 + | DNA polymerase III PolC TERM 1063 888862 - 888883 + F 100 -10.9 -5.06414 | opp_overlap 888864 TGATACTCGTTAATT GAGTGAGCA GCGA TGCTCGCTC TTTTTATTGGCAAAA PEPE_0886 888920 - 889396 + | hypothetical protein TERM 1064 890386 - 890400 + G 70 -7.2 -3.73068 | opp_overlap 890383 GTGGACAAAATGCGC GTTTAG CTG CTAAAC TTGTTAACTTCAAGA PEPE_0887 889410 - 890498 + | transcription elongation factor PEPE_0888 890520 - 890813 + | nucleic-acid-binding protein implicated in transcription termination PEPE_0889 890814 - 891116 + | 50S ribosomal protein L7AE infB 891129 - 893885 + | translation initiation factor IF-2 PEPE_0891 893902 - 894252 + | ribosome-binding factor A TERM 1065 894260 - 894281 + F 100 -7.3 -5.63517 | opp_overlap 894260 GTGATTAATCCAAAA GAGTATGCT TAAT GGCATGCTC TTTTTTGTTTGGACC PEPE_0892 894391 - 895290 + | pseudouridine synthase PEPE_0893 895294 - 896238 + | FAD synthase hrcA 896346 - 897386 + | heat-inducible transcription repressor TERM 1066 897685 - 897664 - g 74 -5.9 -4.60487 | opp_overlap 897665 TATGATGGTCAAAAA CTTGCAAAA GCAA TTTTGCCAG CACTTGATAATCTTG PEPE_0895 897397 - 897969 + | molecular chaperone GrpE (heat shock protein) PEPE_0896 897995 - 899854 + | molecular chaperone DnaK TERM 1067 899875 - 899897 + F 100 -15 -4.71382 | opp_overlap 899875 CAGTAATCGTAAAAA GGTCAAAGTC AGT GACTTTGACC TTTTTGCATGATTAT TERM 1068 899897 - 899875 - f 100 -15 -4.67904 | opp_overlap 899875 CAGTAATCGTAAAAA GGTCAAAGTC AGT GACTTTGACC TTTTTGCATGATTAT PEPE_0897 899951 - 901075 + | DnaJ-like molecular chaperone TERM 1069 901081 - 901110 + T 100 -16.6 -4.16943 | opp_overlap 901081 TATGAATTAGAAAAA GTGCGTGCAAGA ATAAAA TCTTGCACGCAC TTTTCGAGTCTAAAA TERM 1070 901110 - 901081 - T 100 -16.6 -4.99861 | opp_overlap 901081 TATGAATTAGAAAAA GTGCGTGCAAGA ATAAAA TCTTGCACGCAC TTTTCGAGTCTAAAA TERM 1071 901173 - 901129 - T 100 -8.7 -5.44119 | opp_overlap 901129 TCGAGTCTAAAAAAA CGCTATATAAGGGTGAGTA TGTAGAT TACTCATCCATCTATAGCG TTTTTTTTTAATAGT TERM 1072 901129 - 901173 + T 100 -10.9 -6.17184 | opp_overlap 901129 TCGAGTCTAAAAAAA CGCTATATAAGGGTGAGTA TGTAGAT TACTCATCCATCTATAGCG TTTTTTTTTAATAGT PEPE_0898 901408 - 901181 - | hypothetical protein PEPE_0899 902007 - 901537 - | tryptophan-rich sensory protein PEPE_0900 902087 - 902257 + | hypothetical protein TERM 1073 902379 - 902393 + G 74 -8.6 -3.55528 | overlap 902377 TTCAACCATTTGGCG GCGTTT AAC AAACGC TATATTTTTGCAGTT PEPE_0901 902244 - 902726 + | hypothetical protein PEPE_0902 902743 - 902964 + | hypothetical protein fabG 902965 - 903705 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1074 903713 - 903734 + F 100 -8.1 -5.7946 | opp_overlap 903708 903713 903712 CAAAATAATTTAAAG CTTTTCAAC TTTA GTTGGAAAG TTTTTTTGTTAAAAA PEPE_0905 904542 - 904790 + | hypothetical protein TERM 1075 904816 - 904839 + T 100 -10.4 -5.30616 | TATATAATATTTTGA GGATGATTCT AAAT AGAATCGTCC TTTTTATTTGGATAA TERM 1076 904892 - 904937 + T 74 -9.4 -2.66373 | opp_overlap 904892, overlap 904889 AGAGCAAATTAAAAA GTACCTTAAAATTTATATTT CCTCCT GGACATAAATTTTAAGGTAC TAGCTTATTAAAATT TERM 1077 904937 - 904892 - T 100 -10.2 -5.02715 | opp_overlap 904892 904889 AGAGCAAATTAAAAA GTACCTTAAAATTTATAT TTCCTCCTGG ACATAAATTTTAAGGTAC TAGCTTATTAAAATT PEPE_0906 905761 - 904961 - | Mn-containing catalase TERM 1078 906240 - 906222 - R 91 -7.5 -5.24989 | opp_overlap 906222 TCAGAGATTAAAAAA CAACGTA TCAAT TACGTTG TTTTAAATGATTATT TERM 1079 906222 - 906240 + r 80 -7.5 -4.25566 | opp_overlap 906222 TCAGAGATTAAAAAA CAACGTA TCAAT TACGTTG TTTTAAATGATTATT PEPE_0907 906495 - 906262 - | hypothetical protein PEPE_0908 906804 - 906574 - | hypothetical protein PEPE_0909 906892 - 907017 + | hypothetical protein TERM 1080 907110 - 907076 - T 74 -8.8 -3.3353 | overlap 907092 907094 TTGGTTACAAATAGA TTCTTTTAGAAGAACA TAT TGTTTTTCTAGAAGAA AAATAAAAATATCCT TERM 1081 907144 - 907120 - T 84 -3.6 -5.74684 | overlap 907123 907124 GAAGAAAAATAAAAA TATCCTCGAA TTAAC TTCGAGAGTA CCGCGTAATTTAAAG TERM 1082 907256 - 907246 - T 83 -6.8 -4.87133 | opp_overlap 907246 907246, overlap 907247 907248 ACTCTGGAAACAAAA CCTC CAC GAGG CCCAACTTCGTGGAA TERM 1083 908018 - 907977 - T 95 -10.4 -4.48741 | opp_overlap 907982, overlap 907982 TAATCGATTACAAAA TAAAAGCCTATCTAGTCA AATTAA TGATTAGATAGGCTTTTT TGTTTTATATTTATT TERM 1084 908013 - 907982 - T 100 -10.3 -5.20781 | opp_overlap 907982, overlap 907977 GATTACAAAATAAAA GCCTATCTAGTCA AATTAA TGATTAGATAGGC TTTTTTGTTTTATAT TERM 1085 907982 - 908013 + T 100 -12.5 -5.8901 | opp_overlap 907982 907977 GATTACAAAATAAAA GCCTATCTAGTCA AATTAA TGATTAGATAGGC TTTTTTGTTTTATAT PEPE_0910 909961 - 908120 - | GTP-binding protein LepA TERM 1086 910765 - 910749 - g 70 -2.9 -5.03314 | overlap 910750 TTTATTTGGAAAAAA CGACGTC AAA AACGTCC AACTAGCATTGGTAG PEPE_0911 910188 - 910796 + | hypothetical protein TERM 1087 910839 - 910793 - T 93 -6.3 -5.60864 | gap 1, opp_overlap 910804, overlap 910799 910804 TAGACATCAAAAAAA GTAAA-ATAAAACCTCAAAATT TATA AATTTTGAGGTTTTTTATTTAT CCAAAAAAGACAATT TERM 1088 910832 - 910799 - T 100 -11.3 -4.94243 | opp_overlap 910804, overlap 910793 910804 TCAAAAAAAGTAAAA TAAAACCTCAAAATT TATA AATTTTGAGGTTTTT TATTTATCCAAAAAA TERM 1089 910804 - 910827 + T 100 -11.2 -5.72622 | opp_overlap 910799 910793 910804 AAAAGTAAAATAAAA CCTCAAAATT TATA AATTTTGAGG TTTTTTATTTATCCA TERM 1090 910827 - 910804 - T 100 -11.2 -5.24291 | opp_overlap 910804, overlap 910799 910793 AAAAGTAAAATAAAA CCTCAAAATT TATA AATTTTGAGG TTTTTTATTTATCCA PEPE_0912 911897 - 910836 - | di- and tricarboxylate transporter TERM 1091 912010 - 911993 - R 100 -9.1 -5.36364 | overlap 912008 TTAAAAACATAAAAA GCGCCTC AGAA GAGACGC TCCTAAACGATTGAT PEPE_0913 913266 - 912025 - | dipeptidase PEPE_0914 913572 - 913760 + | 4-oxalocrotonate tautomerase TERM 1092 913803 - 913769 - T 100 -12.5 -6.04419 | gap 1, opp_overlap 913769 AAAATAATAAAAAAA CTTCAAAATCAACTGA AAGA TCAGT-GATTTTGAAG TTTTTTACTCGGCTA TERM 1093 913769 - 913803 + T 100 -12.5 -5.15634 | gap 1, opp_overlap 913769 AAAATAATAAAAAAA CTTCAAAATCAACTGA AAGA TCAGT-GATTTTGAAG TTTTTTACTCGGCTA PEPE_0915 914620 - 913808 - | HAD superfamily hydrolase TERM 1094 914091 - 914074 - G 73 -9.9 -2.53271 | overlap 914073 914071 CGATTTCCAGAACAC TTTGGGG TCCG CCCCAAA CGCCGACAGTAATAT TERM 1095 914266 - 914256 - G 73 -8.2 -3.61803 | overlap 914252 AAAAATTCAAATGAA GCGG GAG CCGC ATGATCCGCAAAAAA TERM 1096 914429 - 914439 + g 79 -8.2 -4.1196 | opp_overlap 914428 AGCCCCATTAAAATT CGCC ATC GGCG TTTTAAGGCTAAGTT PEPE_0916 914798 - 916174 + | tRNA and rRNA cytosine-C5-methylase TERM 1097 917595 - 917576 - g 73 -4.4 -4.89393 | gap 1 CAAAGTGGAGAAAAA TTAGTG-GA AGA TCTCACTAA GGCGGTTAGTAGCGA PEPE_0917 916673 - 917626 + | Beta-lactamase class A TERM 1098 917631 - 917667 + T 100 -18.3 -5.51046 | opp_overlap 917631, overlap 917636 AAATTAAATAAAAAA TAAAAGAAGGACGTCCT TTA GGGATGTCCTTCTTTTA TTTTTTATATGTTTA TERM 1099 917667 - 917631 - T 100 -15.4 -5.74086 | opp_overlap 917631 917636 AAATTAAATAAAAAA TAAAAGAAGGACGTCC TTTAG GGATGTCCTTCTTTTA TTTTTTATATGTTTA TERM 1100 917636 - 917662 + T 100 -13.8 -5.51612 | opp_overlap 917631, overlap 917631 AAATAAAAAATAAAA GAAGGACGTCCT TTA GGGATGTCCTTC TTTTATTTTTTATAT PEPE_0918 919139 - 917706 - | hypothetical protein PEPE_0919 919439 - 920494 + | coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein PEPE_0920 920494 - 921171 + | dinucleotide-binding protein TERM 1101 921201 - 921177 - T 100 -11.6 -5.15969 | opp_overlap 921177 TTTGAATTGAAAAAA CTACCTTGAA TAAAT TTCAAGGTAG TTTTTTATATATCTT TERM 1102 921177 - 921201 + T 100 -11.6 -5.46276 | opp_overlap 921177 TTTGAATTGAAAAAA CTACCTTGAA TAAAT TTCAAGGTAG TTTTTTATATATCTT PEPE_0921 922038 - 921259 - | esterase/lipase TERM 1103 922749 - 922777 + G 79 -7.6 -4.25848 | gap 1, overlap 922725 GGTGCTCCTCAATTT TTCCAG-CTTTAC ATGA GTAAGGACTGGAA TTTTAATGAGAGCTT PEPE_0922 922326 - 923435 + | L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase TERM 1104 923445 - 923462 + F 91 -7.7 -5.1287 | opp_overlap 923440 923445 TATTAATTGATAAAA TCCTCCA ATTC TGGGGGA TTTTTTAGATATCGA PEPE_0923 923588 - 924139 + | integral membrane protein TERM 1105 924202 - 924240 + T 100 -12.6 -5.37345 | opp_overlap 924202 GTTAAGATAAAAAAA CTCCGCGCTGTTATTAGT GAG AATAATAACAGTACGGAG TTTTTTGTAATTAAA TERM 1106 924240 - 924202 - T 100 -12.6 -5.80817 | opp_overlap 924202 GTTAAGATAAAAAAA CTCCGCGCTGTTATTAGT GAG AATAATAACAGTACGGAG TTTTTTGTAATTAAA PEPE_0924 925300 - 924317 - | isopentenyl pyrophosphate isomerase TERM 1107 924539 - 924523 - G 72 -8.7 -3.27774 | opp_overlap 924525 CACTTGAATTACGAA TACCGCC AGT AGCGGTA ATTGACAAGCCATCA PEPE_0925 926391 - 925309 - | phosphomevalonate kinase TERM 1108 925921 - 925940 + g 74 -9.4 -3.17714 | CAAAGAACCGTTTCC TTGCACAT CTAA ATGTGCAA TTGATGCAAGTTTGA PEPE_0926 927388 - 926405 - | diphosphomevalonate decarboxylase PEPE_0927 928327 - 927407 - | mevalonate kinase PEPE_0928 928444 - 931233 + | Rad3-related DNA helicase TERM 1109 931464 - 931476 + G 75 -7.7 -4.1523 | TTTAAAGAAAGTCGA TCGAG TAA CTCGA TTTGTATATAATCAG PEPE_0929 931294 - 931785 + | hypothetical protein TERM 1110 931870 - 931903 + G 75 -7.6 -4.0492 | gap 1, opp_overlap 931876, overlap 931876 TTATTAGATAACTAT GCA-AAACTCGGCAT GACAA ATGACGAGTTTTTGC TTTATCTACAGATTA TERM 1111 931876 - 931896 + G 78 -5.4 -5.07011 | opp_overlap 931876, overlap 931870 GATAACTATGCAAAA CTCGGCAT GACAA ATGACGAG TTTTTGCTTTATCTA PEPE_0930 931798 - 932502 + | DNA replication protein DnaD TERM 1112 932544 - 932494 - T 100 -18.1 -4.04394 | opp_overlap 932507, overlap 932507 GTTAAATTAACTAAA GACAACTAAAAAAGATCATCTCA TTGAT TGAGATGATCTTTTTTAGTTATT CAGAATCACTAGCAG TERM 1113 932531 - 932507 - T 100 -11.6 -5.3671 | opp_overlap 932507, overlap 932494 AAGACAACTAAAAAA GATCATCTCA TTGAT TGAGATGATC TTTTTTAGTTATTCA TERM 1114 932507 - 932531 + T 100 -11.6 -5.37865 | opp_overlap 932507 932494 AAGACAACTAAAAAA GATCATCTCA TTGAT TGAGATGATC TTTTTTAGTTATTCA PEPE_0931 934849 - 932540 - | membrane carboxypeptidase (penicillin-binding protein) TERM 1115 932939 - 932952 + g 71 -6.7 -4.07975 | opp_overlap 932937 932939, overlap 932948 ATACTTCCAATAATA CTGAG CTAA CTCAG TTTGTGATTGAGTTA recU 935488 - 934883 - | Holliday junction-specific endonuclease PEPE_0933 935625 - 936176 + | hypothetical protein PEPE_0934 936252 - 936593 + | cell division initiation protein TERM 1116 937006 - 937035 + F 100 -12.3 -5.48213 | opp_overlap 937006 TTACAAATCAGGAAA GCTAGGGTAAAAG TTAT CTTTTATCCTGGC TTTTTATTTTAACTA TERM 1117 937035 - 937006 - f 74 -7.9 -3.91197 | opp_overlap 937006 TTACAAATCAGGAAA GCTAGGGTAAAAG TTAT CTTTTATCCTGGC TTTTTATTTTAACTA TERM 1118 937108 - 937094 - g 72 -8.6 -3.2285 | opp_overlap 937093 937090, overlap 937086 AGAAATTCAATTTAA TTGCCA CAA TGGCAA GTGGTTTAGAAAGTT PEPE_0936 937075 - 938205 + | N6-adenine-specific DNA methylase TERM 1119 938245 - 938255 + G 74 -5.4 -4.71828 | ATTGGAAATGGGATT GTTG GCG CAAC TTTTGTTAATGAAAT PEPE_0937 938215 - 939309 + | glycine/D-amino acid oxidase (deaminating) PEPE_0938 939323 - 939709 + | pore-forming protein PEPE_0939 939717 - 941378 + | formate-tetrahydrofolate ligase PEPE_0940 941392 - 941844 + | signal peptidase II PEPE_0941 941854 - 942756 + | ribosomal large subunit pseudouridine synthase D TERM 1120 943168 - 943144 - g 70 -8.7 -3.21695 | overlap 943118 943139 TGATGATCAACGTAA TTCAGCTGAAC CAC GTTCAACTAAA GCTAATTCTAGTCTT PEPE_0942 942917 - 943450 + | pyrimidine operon attenuation protein/uracil phosphoribosyltransferase PEPE_0943 943478 - 944557 + | carbamoyl phosphate synthase small subunit PEPE_0944 944559 - 947015 + | carbamoyl-phosphate synthase large subunit TERM 1121 947052 - 947021 - T 100 -13.3 -6.14618 | opp_overlap 947021 TATAAAATAAAAAAA CCACTTTATGAAA ATTTTA TTTCATAAAGTGG TTTTCGCGTTTTAAA TERM 1122 947021 - 947052 + T 100 -13.3 -4.28049 | opp_overlap 947021 TATAAAATAAAAAAA CCACTTTATGAAA ATTTTA TTTCATAAAGTGG TTTTCGCGTTTTAAA PEPE_0945 948779 - 947073 - | fibronectin-binding protein TERM 1123 948856 - 948874 + H 80 -5.4 -5.25699 | opp_overlap 948852 948850 TTGCAAAAATACTTA TATTTGTA CCA TACAAGTA TTTTTGTTGTATAAT PEPE_0946 948925 - 949335 + | transcriptional regulator TERM 1124 950060 - 950049 - g 71 -3.6 -5.00616 | CGTTCTCGTAAAAAA GCGA TCGC CCGC GTTGAAAAACTTTTT PEPE_0947 949422 - 950285 + | hypothetical protein PEPE_0948 950632 - 950270 - | camphor resistance protein CrcB TERM 1125 950353 - 950328 - G 83 -10.5 -3.71917 | opp_overlap 950328 ATTCCAAATCCTAAA CTTGCACAACT GTAA AGTAGTGCAAG TTTTTTTGTTGTCTT TERM 1126 950328 - 950353 + g 100 -10.5 -5.94214 | opp_overlap 950328 ATTCCAAATCCTAAA CTTGCACAACT GTAA AGTAGTGCAAG TTTTTTTGTTGTCTT PEPE_0950 951211 - 951567 + | hypothetical protein TERM 1127 951622 - 951575 - T 100 -18.8 -4.27316 | opp_overlap 951580, overlap 951580 TTGGTTAATCTAAAA TAAAAGCCTTCTTAAACCAGTT TTAA ATCTGGTTTAAGAAGGCTTTTT TGATAAATAAGATAT TERM 1128 951580 - 951617 + T 100 -18.7 -5.1675 | opp_overlap 951580 951575 TAATCTAAAATAAAA GCCTTCTTAAACCAGTT TTAA ATCTGGTTTAAGAAGGC TTTTTTGATAAATAA TERM 1129 951617 - 951580 - T 100 -18.7 -5.13343 | opp_overlap 951580, overlap 951575 TAATCTAAAATAAAA GCCTTCTTAAACCAGTT TTAA ATCTGGTTTAAGAAGGC TTTTTTGATAAATAA TERM 1130 951899 - 951874 - T 93 -6.3 -5.52347 | opp_overlap 951867 951874 AATAAAATTAAAAAA GCTTTTAGT TTTTTTTC ACTAAAAGC TTTTTTAAAGTATCA TERM 1131 951874 - 951899 + T 82 -6.3 -5.07567 | opp_overlap 951874, overlap 951867 AATAAAATTAAAAAA GCTTTTAGT TTTTTTTC ACTAAAAGC TTTTTTAAAGTATCA PEPE_0951 952242 - 951916 - | membrane transporter TERM 1132 952197 - 952187 - G 73 -4 -5.055 | opp_overlap 952187 GTAAGTTTCAAAAAA TTAG TAC CTAA TAATTCAGCGACAAT TERM 1133 952485 - 952516 + H 88 -9 -4.20354 | overlap 952486 AAATATTCATTTTCT AGTATTTATTCATT GTTT AATGAATAAATACA TTTTAGAGTTCGATT TERM 1134 952486 - 952515 + H 90 -12.5 -3.1149 | overlap 952485 AATATTCATTTTCTA GTATTTATTCATT GTTT AATGAATAAATAC ATTTTAGAGTTCGAT TERM 1135 953116 - 953137 + G 73 -6.7 -4.20918 | gap 1, opp_overlap 953121 AATCATTTCTGGTCA TGACACAACT GGT AGTTG-GTCA TTTCTTGGACTTAAC TERM 1136 953504 - 953493 - g 73 -3 -5.3236 | opp_overlap 953495, overlap 953486 953495 ATAAGCCAGAAAAAA CTTT CCCT AAAG GAATTATGATCGGTG PEPE_0952 952766 - 954268 + | amino acid transporter TERM 1137 954318 - 954276 - T 100 -13 -4.89009 | opp_overlap 954282, overlap 954264 954277 954282 ATATTTAATTAAAAA CTAAAAGATGAGAGTTCATT TAA AATGAACCCTCATCTTTTTT ATTTCCAATATTTTT TERM 1138 954317 - 954277 - T 100 -16.5 -3.52321 | opp_overlap 954282, overlap 954264 954276 954282 TATTTAATTAAAAAC TAAAAGATGAGAGTTCATT TAA AATGAACCCTCATCTTTTT TATTTCCAATATTTT TERM 1139 954282 - 954312 + T 100 -14.2 -5.64421 | opp_overlap 954282 954277 954276 AATTAAAAACTAAAA GATGAGAGTTCATT TAA AATGAACCCTCATC TTTTTTATTTCCAAT TERM 1140 954312 - 954282 - T 100 -16.4 -4.81523 | opp_overlap 954282, overlap 954277 954276 AATTAAAAACTAAAA GATGAGAGTTCATT TAA AATGAACCCTCATC TTTTTTATTTCCAAT PEPE_0953 954832 - 954317 - | peptide methionine sulfoxide reductase PEPE_0954 955291 - 954848 - | peptide methionine sulfoxide reductase domain-containing protein TERM 1141 955143 - 955132 - G 79 -5.8 -4.8622 | CGGTGGAACTAAAAA GTGG CTCA CCAC TGACGACATCAACGT PEPE_0955 956516 - 955377 - | glycerate kinase TERM 1142 955870 - 955880 + g 86 -8.2 -4.62069 | ATTCGGATCATTGCC GGCG TCG CGCC TTTTTGGGGTCCAAA TERM 1143 956603 - 956583 - R 100 -8.3 -5.64421 | opp_overlap 956583 956578 AGTGGAAATAAAAAA CAGATGACC TTA AGCCATCTG TTTTAGTATTCGTCT PEPE_0956 957550 - 956618 - | putative manganese-dependent inorganic pyrophosphatase PEPE_0957 958537 - 957566 - | transcriptional regulator TERM 1144 957828 - 957816 - G 74 -6.3 -4.62069 | GTGCTATTCGAAAAA CTCAA AAT TTGAG CGGGGGTTGTAAAGT PEPE_0958 961089 - 958636 - | DNA topoisomerase IV subunit A TERM 1145 959981 - 959991 + g 71 -4 -4.85545 | CGGTCTTCAGCCTTC TTCA AGT TGAA TTTTGTTCGTTTGGT TERM 1146 960541 - 960574 + g 78 -11.2 -2.53112 | overlap 960540 ACCCAGATTATGTGG TGGAATTTCAGTAG CGTAAC CTGCTGAAATTCCG GTTGCTCCGTTAACT TERM 1147 961048 - 961067 + g 70 -5.8 -4.32804 | ATCGCCCATAATATC TTCAAGAG CCAG TTCTTGAA TTTTAGATTGATTAT PEPE_0959 963142 - 961103 - | DNA topoisomerase IV subunit B TERM 1148 962652 - 962665 + g 75 -2.4 -5.47399 | GTACCGTTTTTGTTA GTTG TTTTAC CAAC TTTTTTTAGGGTTCC TERM 1149 963112 - 963123 + g 71 -4.4 -4.70739 | opp_overlap 963112 CCTGGATGGATGAAT CATC ATAC GATG TTTTACTTGTTTTTG PEPE_0960 963304 - 963912 + | acyl-phosphate glycerol-3-phosphate acyltransferase TERM 1150 963990 - 963937 - T 90 -9.1 -4.64591 | gap 1, opp_overlap 963937 GAATTACATACAAAA CCCCTAAAAGATTAGGTTTCGC CTTACTAACTC GCG-AACCTGACCCTTTAGGGG TTTTCTTTTTAGAAG TERM 1151 963937 - 963990 + T 88 -6.9 -5.26119 | gap 1, opp_overlap 963937 GAATTACATACAAAA CCCCTAAAAGATTAGGTTTCGC CTTACTAACTC GCG-AACCTGACCCTTTAGGGG TTTTCTTTTTAGAAG PEPE_0961 964880 - 963999 - | galactose mutarotase-like protein hslU 966310 - 964898 - | ATP-dependent protease ATP-binding subunit PEPE_0963 966868 - 966314 - | ATP-dependent protease peptidase subunit PEPE_0964 967792 - 966887 - | tyrosine recombinase XerC subunit TERM 1152 967833 - 967799 - R 100 -9.4 -5.27923 | TAATTCCATAAAAAA CCTCCAACACTTGTCA CTG TAGCAAATGTTAGAGG TAAACGTCAATTAAT PEPE_0965 969936 - 967864 - | DNA topoisomerase I TERM 1153 969888 - 969916 + g 100 -6.8 -5.82316 | gap 1 TTTCAATGGTTTTAG CCTTG-GATGGTG ATTC CACAATCACAAGG TTTTTTTTCGCTGCT TERM 1154 970235 - 970193 - R 87 -8.8 -4.18018 | opp_overlap 970193 970196, overlap 970196 GGGCTTCACTCAAAA TAAGAGATGACATTTT AGTTAACCTAA AAAATGCCATCTCTTA TTCTAAACCATTAGT TERM 1155 970232 - 970196 - R 70 -6.1 -4.21812 | opp_overlap 970193 970196, overlap 970193 CTTCACTCAAAATAA GAGATGACATTTT AGTTAACCTAA AAAATGCCATCTC TTATTCTAAACCATT PEPE_0966 970905 - 970246 - | HAD family sugar phosphatase PEPE_0967 973173 - 970921 - | maltose phosphorylase TERM 1156 972456 - 972469 + g 75 -6.7 -4.42386 | TGTGATACTTTTGAC CGATC GATT GATCG TTTTCTACATCACCG PEPE_0968 974542 - 973199 - | major facilitator superfamily permease TERM 1157 974508 - 974526 + g 70 -7.4 -3.79874 | opp_overlap 974506 974507, overlap 974500 AAATTTTTGGAAAGC GTCGGAAG ACC CTTCCCAC TTGTCTTATCTGCCA TERM 1158 974611 - 974626 + r 80 -7.6 -4.30995 | opp_overlap 974610 974609 974603, overlap 974613 ATAGAGATTTAAATT GTGCAA GCGT TTGCAC TTATTTTGTGCAAAC TERM 1159 974613 - 974647 + r 100 -18.8 -5.40474 | opp_overlap 974610 974609 974603, overlap 974611 AGAGATTTAAATTGT GCAAGCGTTTGCAC TTATTTT GTGCAAACGCTTGC TTTTTTTAACCAAAT TERM 1160 974680 - 974669 - R 95 -5.8 -5.72053 | opp_overlap 974664 974669, overlap 974662 TAACCAAATAAAAAA GAGG AATC CCTC TTTTCTTAAATAATA TERM 1161 974669 - 974680 + r 74 -5.8 -4.69053 | opp_overlap 974669 974662, overlap 974664 TAACCAAATAAAAAA GAGG AATC CCTC TTTTCTTAAATAATA PEPE_0969 975639 - 974686 - | LacI family transcription regulator PEPE_0970 976599 - 975739 - | Rossmann fold nucleotide-binding protein for DNA uptake PEPE_0971 977407 - 976640 - | ribonuclease HII PEPE_0972 978257 - 977394 - | GTP-binding protein YlqF TERM 1162 977772 - 977783 + g 79 -4.4 -5.26875 | TCCGCGACGTGAACG CAAC CATT GTTG TTTTTTCGTTACCCC TERM 1163 978851 - 978865 + r 72 -7.2 -3.80189 | opp_overlap 978858 ACATCTGTTATGTAC CTAGAT ATA ATCTAG TTTAAATTAGTGTGT TERM 1164 978968 - 978939 - R 100 -11 -5.38497 | opp_overlap 978939 978945, overlap 978945 ATTTAAAGTAAAAAA GAAAAACAATTC GTAAAT GAATTGTTTTTC TTCAATTGTCTTCAT TERM 1165 978939 - 978968 + r 89 -11.7 -3.29549 | opp_overlap 978939 978945, overlap 978945 ATTTAAAGTAAAAAA GAAAAACAATTCG TAAA TGAATTGTTTTTC TTCAATTGTCTTCAT TERM 1166 978945 - 978962 + r 79 -4.9 -5.14645 | opp_overlap 978945 978939, overlap 978939 AGTAAAAAAGAAAAA CAATTCG TAAA TGAATTG TTTTTCTTCAATTGT TERM 1167 978962 - 978945 - R 86 -4.2 -5.77571 | opp_overlap 978939 978945, overlap 978939 AGTAAAAAAGAAAAA CAATTC GTAAAT GAATTG TTTTTCTTCAATTGT PEPE_0973 980387 - 979053 - | hypothetical protein PEPE_0974 982619 - 980589 - | hypothetical protein TERM 1168 982169 - 982179 + g 70 -2.6 -5.09225 | TTGGTATTGAAAATC TATT AAT AATA TTTTTTAAATCAGAT PEPE_0975 983364 - 983038 - | hypothetical protein TERM 1169 983593 - 983560 - R 100 -19.8 -5.56372 | opp_overlap 983560 AAACCAAAATAAAAA GCGAGGATGACAGA AATTAA TCTGTCATCCTCGC TTTTCGTAAATAAAG TERM 1170 983560 - 983593 + r 100 -19.8 -4.2828 | opp_overlap 983560 AAACCAAAATAAAAA GCGAGGATGACAGA AATTAA TCTGTCATCCTCGC TTTTCGTAAATAAAG PEPE_0976 985746 - 983632 - | ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones TERM 1171 985572 - 985586 + g 72 -8.6 -3.2218 | TTGTTTTTGCTTGTT CTGGTA ATT TACCAG TTGCTCGATATTGAG TERM 1172 985987 - 985954 - R 91 -7.5 -5.26875 | opp_overlap 985954 CTGGGAACTAAAAAA CTAGCTAACCAAAAC TAAA GGATTGGTTAACTAG TCTCATGAAGTTTCT PEPE_0977 988075 - 986030 - | hypothetical protein TERM 1173 986676 - 986692 + g 71 -4.5 -4.70879 | overlap 986668 986677 GTATCTCCTAGATTT TTTAGTT TAA AACTAAG TTTTTCGCCTTTACG PEPE_0978 988400 - 988062 - | hypothetical protein PEPE_0979 989460 - 988402 - | cell surface protein PEPE_0980 990100 - 989447 - | cell surface protein TERM 1174 989656 - 989668 + g 72 -5.5 -4.58786 | TATCTTGAGTGATTT TTGGC ATG GCCGA TTTATTATTCTTAGT TERM 1175 990253 - 990231 - R 100 -8.6 -5.4505 | opp_overlap 990231 990226 TTGGGCAATAAAAAA GATGCAATTA ACC TAATTACATC TTTTATTTGGTTAAG TERM 1176 990231 - 990253 + r 82 -6.4 -4.99947 | opp_overlap 990231, overlap 990226 TTGGGCAATAAAAAA GATGCAATTA ACC TAATTACATC TTTTATTTGGTTAAG PEPE_0981 991047 - 990256 - | hypothetical protein TERM 1177 990583 - 990568 - G 72 -4.8 -4.8143 | GTAATAATTCAAAAA TAATTG TTCC CAATTA GCTAATAAGTTAGTA TERM 1178 990949 - 990969 + g 70 -6.9 -3.8534 | opp_overlap 990949 ATACAAAAAATATAG CTCATCTTG ATT TAAGGTGAG TTCTCCTTTTTTGTT TERM 1179 991290 - 991275 - R 82 -6.1 -5.01546 | overlap 991277 AAACCTATACAAAAA TGGGG GTATGT CCCCA AAATGTCCCCAAAAA TERM 1180 991371 - 991344 - R 82 -2.7 -5.9218 | TAGACAATAAAAAAA CTACTCATCCC AGTTAA GGATTGAATAG TTTTTTGTTTTCTAG TERM 1181 991670 - 991644 - R 78 -2.3 -5.72622 | gap 1, overlap 991637 GTTACAAACAAAAAA TCACGCAACCTA TTTA TTGGCTG-GTGA TTCTCTGGTAAGCTT TERM 1182 991775 - 991744 - R 100 -16 -3.86202 | opp_overlap 991748, overlap 991748 TTTGACTACATTAAA GAAAGCCCCCTAGC GTTC ACTAGGAGGCTTTC GCTGTATTCAGCTAC TERM 1183 991771 - 991748 - R 100 -11 -4.54205 | opp_overlap 991748, overlap 991744 ACTACATTAAAGAAA GCCCCCTAGC GTTC ACTAGGAGGC TTTCGCTGTATTCAG TERM 1184 991748 - 991771 + r 77 -8.1 -3.76775 | opp_overlap 991748 991744 ACTACATTAAAGAAA GCCCCCTAG CGTTCA CTAGGAGGC TTTCGCTGTATTCAG TERM 1185 991965 - 991938 - R 100 -9.9 -5.58454 | opp_overlap 991938 GCCATAGCAAAAAAA GCCTGCTCAGC ATTTAA ACTGAACAGGC TTTTTAACAGGGTTT TERM 1186 991938 - 991965 + r 79 -7 -4.58685 | opp_overlap 991938 GCCATAGCAAAAAAA GCCTGCTCAG CATTTAAA CTGAACAGGC TTTTTAACAGGGTTT PEPE_0982 992519 - 992277 - | hypothetical protein TERM 1187 992627 - 992604 - R 100 -12.4 -5.56264 | opp_overlap 992604 992600 GTTAAATACAAAAAA TCCCCCACGC CGAA GCGCAGGGGA TTGATTATACTATTT TERM 1188 992604 - 992627 + r 73 -8 -3.50454 | opp_overlap 992604, overlap 992600 GTTAAATACAAAAAA TCCCCCACGC CGAA GCGCAGGGGA TTGATTATACTATTT PEPE_0983 993014 - 992637 - | hypothetical protein PEPE_0984 993287 - 993024 - | hypothetical protein PEPE_0985 994450 - 993287 - | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) TERM 1189 994087 - 994102 + g 76 -9 -3.79071 | CTAGTACCGCTCCAA CTGGCA ACCC TGCCAG TTTAGCTGTTCTCCC TERM 1190 994429 - 994407 - G 75 -7.7 -4.05669 | opp_overlap 994407, overlap 994395 994405 AAGGCCATAAAAATA GCACCCACC ATTAA GATGAGTGC CTTTAATTTGTGTTC PEPE_0986 994821 - 994462 - | hypothetical protein PEPE_0987 995103 - 994855 - | hypothetical protein PEPE_0988 995319 - 995116 - | hypothetical protein PEPE_0989 995539 - 995312 - | hypothetical protein PEPE_0990 998720 - 995532 - | hypothetical protein TERM 1191 995628 - 995618 - G 77 -6.8 -4.64591 | TAATGACAGATAAAA GTGG AAC CCAC GCTCGATCATATTGA TERM 1192 997583 - 997598 + g 73 -6.8 -4.27007 | AATCCTCTGGAGCTG GCGACC AATC GGTTGC TTTATTACCTATTTC PEPE_0991 1001127 - 998737 - | hypothetical protein PEPE_0992 1002914 - 1001148 - | hypothetical protein TERM 1193 1002973 - 1002952 - R 88 -7.2 -5.12617 | opp_overlap 1002952 1002952 1002969, overlap 1002969 TAACTATGTAAAAAA GGGCGTCC AATTAA GGACGACC CTTTGGTTGATTATG TERM 1194 1002952 - 1002974 + r 71 -7 -4.02535 | gap 1, opp_overlap 1002952 1002969, overlap 1002952 1002969 TAACTATGTAAAAAA GGG-CGTCC AATTAA GGACGACCC TTTGGTTGATTATGA PEPE_0993 1007752 - 1002992 - | SLT domain-containing protein TERM 1195 1004173 - 1004157 - G 70 -8.7 -3.18023 | overlap 1004155 1004158 TTACCATCATGAACA CCACCAC CAC GTGGTGA ACCAAATCCATCGGT TERM 1196 1004172 - 1004158 - G 73 -10 -2.50492 | overlap 1004155 1004157 TACCATCATGAACAC CACCAC CAC GTGGTG AACCAAATCCATCGG PEPE_0994 1007969 - 1007784 - | hypothetical protein TERM 1197 1007916 - 1007883 - G 73 -3.9 -5.15634 | overlap 1007884 1007887 CATCGTATTAAAAAA TGAACTATCATCAAA GTCT TTCGGTGATAGTCCC TCAGATAATAACTGT PEPE_0995 1008388 - 1008014 - | hypothetical protein TERM 1198 1008452 - 1008431 - R 72 -5 -4.7497 | opp_overlap 1008431 1008440 TGTATGTATTAAAAA GGCCACCC ATTTGA GGGAAGCC TTTAGATAATTATTT PEPE_0996 1009115 - 1008462 - | hypothetical protein PEPE_0997 1009511 - 1009131 - | hypothetical protein PEPE_0998 1009918 - 1009511 - | hypothetical protein PEPE_0999 1010268 - 1009921 - | hypothetical protein PEPE_1000 1010590 - 1010258 - | hypothetical protein PEPE_1001 1011896 - 1010664 - | phage phi-C31 gp36 major capsid-like protein PEPE_1002 1012651 - 1011896 - | protease subunit of ATP-dependent Clp protease PEPE_1003 1013792 - 1012629 - | hypothetical protein PEPE_1004 1013989 - 1013795 - | hypothetical protein PEPE_1005 1015877 - 1013979 - | Phage terminase-like protein, large subunit TERM 1199 1014422 - 1014410 - G 73 -4.1 -5.02357 | CATAACCAAAGAAAA CAACT TCC AGTCG ATGTTGCTCAACAAA TERM 1200 1014621 - 1014605 - G 77 -8.1 -3.88559 | AACTATGCTGATAAA TAAACCA TCG TGGTTTA CCATTATTATCACGA PEPE_1006 1016338 - 1015880 - | Phage terminase, small subunit PEPE_1007 1017044 - 1016535 - | restriction endonuclease TERM 1201 1017093 - 1017068 - R 88 -6.2 -5.45802 | CCTCCAAAATAAAAA GCCACACAAC AATTAA GTTATGTGAC TTTAATGTTATAACT PEPE_1008 1018013 - 1017582 - | hypothetical protein PEPE_1009 1018396 - 1018004 - | hypothetical protein PEPE_1010 1018940 - 1018476 - | hypothetical protein PEPE_1011 1018980 - 1018933 - | hypothetical protein PEPE_1012 1019324 - 1018992 - | hypothetical protein PEPE_1013 1019696 - 1019325 - | hypothetical protein PEPE_1014 1019851 - 1019711 - | hypothetical protein PEPE_1015 1020079 - 1019861 - | hypothetical protein PEPE_1016 1020486 - 1020076 - | Holliday junction resolvase PEPE_1017 1020603 - 1020487 - | hypothetical protein PEPE_1018 1021421 - 1020603 - | DNA replication protein PEPE_1019 1022145 - 1021402 - | hypothetical protein PEPE_1020 1022823 - 1022146 - | hypothetical protein TERM 1202 1022222 - 1022208 - G 70 -8.6 -3.18199 | CAATTTTTAACTTAA TACCAG TAA CTGGTA CGTGATACTTAGCGG PEPE_1021 1023232 - 1022834 - | single-stranded DNA-binding protein PEPE_1022 1023891 - 1023235 - | hypothetical protein PEPE_1023 1024349 - 1023888 - | hypothetical protein PEPE_1024 1024443 - 1024342 - | hypothetical protein TERM 1203 1024481 - 1024502 + H 100 -8.7 -5.49568 | TTATTTGTTTTCGAA GTCCGCTAT TGCC GTAGCGGGC TTTTTATTTTAAATT TERM 1204 1024799 - 1024812 + G 72 -2.4 -5.1963 | CCTTTTTAATGTATT TACC GAGATG GGTA TTTTTGTTGATTCAA PEPE_1025 1024575 - 1024841 + | hypothetical protein PEPE_1026 1025055 - 1024798 - | hypothetical protein TERM 1205 1024885 - 1024917 + g 73 -4.1 -5.14965 | opp_overlap 1024885 AGCATCATTTACTAA GTGCTCCTCGCTA CCACAAA TAGCGTCGAGTAC TTTTTTAATAGGAAT PEPE_1027 1025153 - 1025055 - | hypothetical protein PEPE_1028 1025362 - 1025153 - | hypothetical protein TERM 1206 1025335 - 1025345 + g 72 -5.4 -4.58773 | TTGGATACTTGTCAT CAGA TAA TCTG TTTTCGTTTACTGCC PEPE_1029 1025451 - 1025365 - | hypothetical protein PEPE_1030 1025707 - 1025910 + | hypothetical protein TERM 1207 1025917 - 1025940 + T 76 -5.2 -5.09259 | opp_overlap 1025917, overlap 1025922 ACTAAGTAATATCAA GGGCGGTTCC ATTA GGAACTACTC TTTTATTTTCCAATC PEPE_1031 1026135 - 1025935 - | hypothetical protein PEPE_1032 1026984 - 1026181 - | phage-encoded protein TERM 1208 1026802 - 1026830 + g 73 -9.5 -2.96979 | overlap 1026797 1026805 CATAGTTTGAGTCCC AGAGGGGGTAACG ATT CGTTCCTCCCTCA TATACTTCGTCTTAA TERM 1209 1026805 - 1026827 + g 74 -9.8 -2.71204 | overlap 1026802 1026797 AGTTTGAGTCCCAGA GGGGGTAACG ATT CGTTCCTCCC TCATATACTTCGTCT TERM 1210 1026954 - 1026967 + g 72 -5.3 -4.58213 | TTCGTACTTCGTTTC CTTCA AAGT TGAAG TTTTGTAATTCATTC PEPE_1033 1027188 - 1027000 - | hypothetical protein PEPE_1034 1027454 - 1027801 + | XRE family transcriptional regulator PEPE_1035 1027907 - 1028215 + | hypothetical protein TERM 1211 1028310 - 1028288 - g 79 -4.8 -5.33848 | opp_overlap 1028288 1028299, overlap 1028290 ATCAGAATGAAAAAA GTGTTAACAC TTG GTGTTATCGC CATTTCTTCATTAGC TERM 1212 1028468 - 1028458 - g 71 -4 -4.96028 | TGCTAAAAAAAATAA GATT GTC AATC CTGATAAAGGAACTA TERM 1213 1028585 - 1028570 - g 71 -3.2 -5.04987 | AATACCTCTAAAAAA CAACTG ACTG CAGATG CTATTGATGAAGCTA PEPE_1036 1028279 - 1029406 + | hypothetical protein PEPE_1037 1029553 - 1029750 + | hypothetical protein TERM 1214 1029833 - 1029805 - f 84 -11.2 -3.03124 | CTGTATGTGGGAATA GTGGTTACTACA ATATA TGTAATAACCAC AAAATAAAAAAGCCA TERM 1215 1029880 - 1029845 - f 100 -6.1 -5.86976 | CCACAAAATAAAAAA GCCACATCCCCCACC GACCAA AGTTTGGGATGTGAC CTAACCCTAAAAAAC PEPE_1038 1029975 - 1031048 + | integrase PEPE_1039 1031611 - 1031069 - | transcription regulator TERM 1216 1031286 - 1031267 - G 78 -9.4 -3.60234 | TGATATACTCGTAAA CTGACTAT CTGC ATAGTCAG CCAATCGTTGGTGAG PEPE_1040 1031855 - 1032217 + | hypothetical protein TERM 1217 1032260 - 1032281 + T 93 -9.5 -4.63542 | opp_overlap 1032260 1032255 1032262, overlap 1032280 ATATTTATAATAAAA GGCCAATTC TTAC GAATTGGTC TTTTTAAGAATTATC TERM 1218 1032281 - 1032260 - T 86 -7.3 -4.79955 | opp_overlap 1032260 1032280, overlap 1032255 1032262 ATATTTATAATAAAA GGCCAATTC TTAC GAATTGGTC TTTTTAAGAATTATC PEPE_1041 1033168 - 1032326 - | transcriptional regulator TERM 1219 1032506 - 1032541 + g 95 -14.3 -3.19463 | opp_overlap 1032511 1032534, overlap 1032497 1032511 GTCATCGTGCGTTAA CGTAACAGTACTATT TTTTGC GATAGTACTGTTACG TTCATGCGTAATAGC TERM 1220 1033263 - 1033245 - R 83 -6.7 -4.74453 | opp_overlap 1033245 1033248 TAATATATCCAAAAA GACCGGA AAATA TCCGATC TTCTAAATTTGAATA PEPE_1042 1035272 - 1033293 - | sucrose-specific PTS system IIBC component murQ 1036180 - 1035290 - | N-acetylmuramic acid-6-phosphate etherase TERM 1221 1036244 - 1036232 - H 72 -4.9 -4.78237 | CATTTTATAATAAAA GAAAT AAC ATTTC AAATAAATATTTTAT TERM 1222 1036588 - 1036574 - g 78 -7.1 -4.46233 | TTAATCCTAAAGAAA GGCGA AAAAA TCGCC GATGGATTTAAACCA PEPE_1044 1036457 - 1038217 + | acyl esterase TERM 1223 1038242 - 1038225 - f 74 -5.7 -4.5478 | AAAAATAGAAAAGAA TTTAGTT GCTT AACTAAA GGATTTGTAGTATTA TERM 1224 1038243 - 1038271 + F 100 -6.9 -5.63103 | opp_overlap 1038243 AGTTGCTTAACTAAA GGATTTGTAGT ATTAATG ACTATAAATCC TTTTTTTGATTGGAG PEPE_1045 1038292 - 1039197 + | LysR family transcriptional regulator TERM 1225 1039191 - 1039218 + T 100 -14.4 -5.28983 | opp_overlap 1039191 CGATACTAAAAAAAA TAGATAAGCTAG TTAA CTAGCTTATCTA TTTTTGTATTTTCAC TERM 1226 1039218 - 1039191 - T 100 -14.4 -5.90981 | opp_overlap 1039191 CGATACTAAAAAAAA TAGATAAGCTAG TTAA CTAGCTTATCTA TTTTTGTATTTTCAC PEPE_1046 1040085 - 1039633 - | transcriptional regulator PEPE_1047 1040179 - 1040778 + | putative NADPH-quinone reductase (modulator of drug activity B) TERM 1227 1040876 - 1040843 - T 100 -11.3 -4.16943 | opp_overlap 1040826 1040848 1040866, overlap 1040826 1040848 TTTGATATTGGAAAA CAAAACTCCTATTTA TTAA TAAATAGGAGTTTTT ATGTGTCACTAAAAA TERM 1228 1040848 - 1040871 + T 100 -11.2 -5.04597 | opp_overlap 1040848 1040843, overlap 1040866 TATTGGAAAACAAAA CTCCTATTTA TTAA TAAATAGGAG TTTTTATGTGTCACT TERM 1229 1040871 - 1040848 - T 100 -11.2 -5.09259 | opp_overlap 1040848 1040866, overlap 1040843 TATTGGAAAACAAAA CTCCTATTTA TTAA TAAATAGGAG TTTTTATGTGTCACT PEPE_1048 1043344 - 1041191 - | hypothetical protein TERM 1230 1041240 - 1041252 + g 70 -9.1 -3.20769 | CTTACCTCTCGATTT GGGTG AAT CACCC TTACTAGAATTATTT TERM 1231 1041688 - 1041676 - G 74 -9.1 -3.63744 | overlap 1041674 CTTGGTCGTAAAACA CCCCA TTT TGGGG ATAATCATCACTAAC PEPE_1049 1044681 - 1043443 - | hypothetical protein TERM 1232 1043636 - 1043648 + g 72 -4.9 -4.72272 | ATAGCGTGGTATTTA TTATC TTC GATAA TTTTTGGTAAAGGCC TERM 1233 1043682 - 1043695 + g 83 -6.7 -5.16071 | opp_overlap 1043682 CACTGTCTTTATCAA TGGTC CCTT GACCA TTTTTATTAGTAGTT TERM 1234 1044860 - 1044881 + r 81 -4.4 -5.4251 | opp_overlap 1044862 TTCTTTTTAGGATAT TATGGCCC TTAAAC GGGACATA TTTTTTATATCTAAA TERM 1235 1044967 - 1045003 + r 76 -7.3 -4.25566 | opp_overlap 1044967, overlap 1045001 TATTTTTCTAAAAAA CGACCGTGCAGGC ATTAAAAATTA GTCTACACGGTCG TTTTAAATGATTATT TERM 1236 1045003 - 1044967 - R 88 -7.3 -5.0133 | opp_overlap 1044967 1045001 TATTTTTCTAAAAAA CGACCGTGCAGGC ATTAAAAATTA GTCTACACGGTCG TTTTAAATGATTATT PEPE_1050 1045878 - 1045033 - | transcriptional regulator TERM 1237 1046037 - 1046011 - R 87 -4.5 -5.71712 | TCTTATATAAAAAAA CTAGCCAATCA GTCAT CGATTAACTAG TTTCTGTAATTTACT PEPE_1051 1046494 - 1046069 - | nucleoside diphosphate kinase PEPE_1052 1046612 - 1047106 + | acetyltransferase TERM 1238 1047599 - 1047619 + G 95 -5.5 -5.74086 | opp_overlap 1047599, overlap 1047596 AAAATGGGAACATCA CTACTAGTG GTC TATTAGTAG TTTTTTGTTTCATTT PEPE_1053 1047295 - 1048800 + | amino acid transporter TERM 1239 1048817 - 1048847 + G 81 -3.4 -5.59534 | gap 1, opp_overlap 1048817 TTTCCAAATAAAAAA GGAAACC-AATTC ACTTAC GAATTTGGTCTCC TTTTTTATTGTACTT TERM 1240 1048847 - 1048817 - g 89 -6.3 -5.63517 | gap 1, opp_overlap 1048817 TTTCCAAATAAAAAA GGAAACCAA-TTCA CTTA CGAATTTGGTCTCC TTTTTTATTGTACTT PEPE_1054 1048787 - 1048864 + | hypothetical protein PEPE_1055 1050586 - 1049204 - | D-xylose proton-symporter PEPE_1056 1051118 - 1050666 - | ADP-ribose pyrophosphatase TERM 1241 1051511 - 1051477 - R 100 -10.2 -5.44119 | TCCATTCTAAAAAAA CGCCCTCAATACAT TCATATT ATGTATTGAAAGCG GTATCAAAAACATGG PEPE_1057 1052452 - 1051556 - | AraC family transcriptional regulator TERM 1242 1052708 - 1052670 - g 100 -13.3 -4.67048 | overlap 1052672 TTATTCTAAAAGAAA CAGACTTAACGATTCCA ACCTA TGGAATCGCTAAGCCAG AAAAAAATCCGATGT TERM 1243 1052706 - 1052672 - g 100 -14.5 -3.94471 | overlap 1052670 ATTCTAAAAGAAACA GACTTAACGATTCCA ACCTA TGGAATCGCTAAGCC AGAAAAAAATCCGAT TERM 1244 1054304 - 1054314 + G 72 -5.4 -4.56597 | opp_overlap 1054295 1054312, overlap 1054310 GGGAAATATGCTGAA GCAT ACG ATGC TTTTTACAAAGCAAC PEPE_1058 1052624 - 1055926 + | TPR repeat-containing protein TERM 1245 1055956 - 1055927 - f 85 -10.9 -3.34236 | opp_overlap 1055929 1055934, overlap 1055929 1055934 AAATTTAGTTTATAA TATAAAAGCACTC ATGT GAGTGCTTTTATT AATTGGAGGAATTTC TERM 1246 1055929 - 1055954 + F 100 -13.5 -3.34192 | opp_overlap 1055927 1055929 1055934, overlap 1055934 ATTTAGTTTATAATA TAAAAGCACTC ATGT GAGTGCTTTTA TTAATTGGAGGAATT TERM 1247 1055954 - 1055929 - f 100 -13.5 -3.23572 | opp_overlap 1055929 1055934, overlap 1055927 1055934 ATTTAGTTTATAATA TAAAAGCACTC ATGT GAGTGCTTTTA TTAATTGGAGGAATT TERM 1248 1055934 - 1055949 + F 93 -9 -4.78572 | opp_overlap 1055929 1055927 1055934, overlap 1055929 GTTTATAATATAAAA GCACTC ATGT GAGTGC TTTTATTAATTGGAG TERM 1249 1055949 - 1055934 - f 90 -9 -4.73682 | opp_overlap 1055934 1055929, overlap 1055929 1055927 GTTTATAATATAAAA GCACTC ATGT GAGTGC TTTTATTAATTGGAG PEPE_1059 1055975 - 1057000 + | aldose 1-epimerase TERM 1250 1057030 - 1057072 + T 100 -12.3 -4.72272 | opp_overlap 1057030 GTATTCCATATAAAA TAAGAGTTGAATTTCTGAA TAAAC TACAGAAATCCAACTCTTA TTTTTAGTACAACCG TERM 1251 1057072 - 1057030 - T 100 -14.5 -4.54047 | opp_overlap 1057030 GTATTCCATATAAAA TAAGAGTTGAATTTCTGAA TAAAC TACAGAAATCCAACTCTTA TTTTTAGTACAACCG PEPE_1060 1057457 - 1057104 - | arsenate reductase TERM 1252 1057603 - 1057576 - R 100 -13 -4.66609 | opp_overlap 1057582, overlap 1057582 TATTTTATTTAAAAA TAAAAAGACGAT CCTA ATCGTCTTTTTA ACTATTCAGCTTTAC TERM 1253 1057597 - 1057582 - R 100 -7.6 -5.63236 | opp_overlap 1057582, overlap 1057576 ATTTAAAAATAAAAA GACGAT CCTA ATCGTC TTTTTAACTATTCAG TERM 1254 1057582 - 1057597 + r 87 -7.6 -4.74706 | opp_overlap 1057582 1057576 ATTTAAAAATAAAAA GACGAT CCTA ATCGTC TTTTTAACTATTCAG PEPE_1061 1058942 - 1057605 - | Na+/H+ antiporter TERM 1255 1058528 - 1058493 - G 72 -5.4 -4.57353 | gap 1, overlap 1058498 1058516 GGCTACCAGAGAAAA TGTAACGGGTGCCATCG TAA CGATGGTTCCCGTTG-A GGTACCAATACAAAG TERM 1256 1058524 - 1058498 - G 90 -12.2 -3.43774 | overlap 1058493 1058516 CCAGAGAAAATGTAA CGGGTGCCATCG TAA CGATGGTTCCCG TTGAGGTACCAATAC TERM 1257 1059105 - 1059124 + r 100 -13.6 -3.12847 | opp_overlap 1059105 AATTCCAATCAAAAA GGCCCTAC AACT GTAGGGCC TTAAATCAATTTATT TERM 1258 1059124 - 1059105 - R 100 -13.6 -4.87893 | opp_overlap 1059105 AATTCCAATCAAAAA GGCCCTAC AACT GTAGGGCC TTAAATCAATTTATT PEPE_1062 1060553 - 1059135 - | periplasmic protease PEPE_1063 1060777 - 1060553 - | hypothetical protein PEPE_1064 1061379 - 1060789 - | hypothetical protein PEPE_1065 1062305 - 1061388 - | lysophospholipase L1 related esterase TERM 1259 1062175 - 1062185 + g 71 -6.8 -4.1673 | ACTTTTTTCTGGGTT GTCG GTA CGAC TTTGTTAGCAACTTG TERM 1260 1062366 - 1062329 - R 79 -7 -4.64861 | opp_overlap 1062329 1062330, overlap 1062330 TCTCTGTAAAATAAA TTAGGGCCAAAATCGG TTAGTC CCGATCTAAGCCCTAC TTTTTAATCTTCACT TERM 1261 1062365 - 1062330 - R 85 -10.5 -3.38435 | opp_overlap 1062330 1062329, overlap 1062329 CTCTGTAAAATAAAT TAGGGCCAAAATCGG TTAGTC CCGATCTAAGCCCTA CTTTTTAATCTTCAC PEPE_1066 1063215 - 1062370 - | hypothetical protein TERM 1262 1063426 - 1063402 - R 83 -6.7 -4.83615 | opp_overlap 1063402 GAGCCTTGATAAAAA TAATATTTAAC CTC ATTAAATATTA TTTTTACTTCAAGCC TERM 1263 1063402 - 1063426 + r 78 -6 -4.8622 | opp_overlap 1063402 GAGCCTTGATAAAAA TAATATTTAA CCTCA TTAAATATTA TTTTTACTTCAAGCC PEPE_1067 1064189 - 1063452 - | ABC-type polar amino acid transport system, ATPase component PEPE_1068 1065637 - 1064186 - | ABC-type amino acid transport system, permease and periplasmic component TERM 1264 1064563 - 1064583 + g 89 -7.6 -5.0538 | opp_overlap 1064563 AGGTTAAGGTAATAA TTCCGGCA ACAAA TGCTGGAA TTTTTTCACCTACCA TERM 1265 1065746 - 1065732 - R 95 -5.7 -5.73978 | opp_overlap 1065732 AGGATAAATAAAAAA CCTCA ATAAA TGAGG TTTTAACGTTTATTA PEPE_1069 1066244 - 1065759 - | dihydrofolate reductase thyA 1067223 - 1066273 - | thymidylate synthase PEPE_1071 1069113 - 1067236 - | ABC transporter ATPase TERM 1266 1068139 - 1068156 + g 70 -2.7 -5.02476 | opp_overlap 1068139 AACTTCTAAATCTAA GTCATTG ATTT CAATTAC TTTTTTGCCCAATCT PEPE_1072 1070306 - 1069116 - | tRNA nucleotidyltransferase/poly(A) polymerase PEPE_1073 1070578 - 1071462 + | hypothetical protein TERM 1267 1071467 - 1071502 + T 100 -10 -5.29385 | opp_overlap 1071467 TCCCTAATTAAAAAA CATCAGTTATGTAT AAACTTAA ATACATGACTGATG TTTTTTAATTAGCTT TERM 1268 1071502 - 1071467 - T 91 -7.8 -5.26875 | opp_overlap 1071467 TCCCTAATTAAAAAA CATCAGTTATGTAT AAACTTAA ATACATGACTGATG TTTTTTAATTAGCTT PEPE_1074 1071987 - 1071517 - | purine deoxyribosyltransferase TERM 1269 1072010 - 1072032 + r 71 -2.9 -5.30575 | gap 1 ACTCACTCCTTCAAT TATGTGTATA TAAC TATAC-CATA TTTTTTCACTTTTTA TERM 1270 1072166 - 1072142 - R 100 -10.8 -5.22312 | opp_overlap 1072142 ATCTATATTAAAAAA CAGATTCCGC GCTTG ACGGAATCTG TTTTTATTATTTATC TERM 1271 1072142 - 1072166 + r 100 -10.1 -5.42164 | opp_overlap 1072142 ATCTATATTAAAAAA CAGATTCCG CGCTTGA CGGAATCTG TTTTTATTATTTATC PEPE_1075 1072475 - 1072173 - | hypothetical protein PEPE_1076 1073766 - 1072498 - | TPR repeat-containing protein TERM 1272 1073814 - 1073790 - R 100 -11.5 -5.31519 | ACAGGCAAACAAAAA GCCAGCATAAC AGA GCTATGCTGAC TAAAGTTCAGAAAAC PEPE_1077 1074108 - 1073833 - | nucleoid protein Hbs TERM 1273 1074206 - 1074175 - R 70 -4.6 -4.84363 | opp_overlap 1074197 1074199, overlap 1074176 1074189 1074199 TGAAAGGATCAAAAA TGTTGAAACAATAC TCTG ATATTATTTCAACT TGAAATATATCATAC TERM 1274 1074205 - 1074176 - R 73 -8.1 -3.49533 | opp_overlap 1074197 1074199, overlap 1074175 1074189 1074199 GAAAGGATCAAAAAT GTTGAAACAATAC TCTG ATATTATTTCAAC TTGAAATATATCATA rpsA 1076935 - 1075727 - | 30S ribosomal protein S1 TERM 1275 1076130 - 1076146 + g 74 -5.1 -4.87665 | overlap 1076143 TGTGTTTGTTTGATT GAAAGTG AAA CACGTTC TTTTTCTGCATCAAC PEPE_1080 1077691 - 1077011 - | cytidylate kinase TERM 1276 1077623 - 1077603 - G 72 -7.7 -3.78004 | opp_overlap 1077602 1077603, overlap 1077605 GTATCACAATAAACA TATTGCAAA TCC TTTGCAACA ATTTTTGCAACTGTA TERM 1277 1077621 - 1077605 - G 71 -8.1 -3.46387 | opp_overlap 1077603 1077602, overlap 1077603 ATCACAATAAACATA TTGCAAA TCC TTTGCAA CAATTTTTGCAACTG PEPE_1081 1078384 - 1077707 - | LysM domain-containing protein PEPE_1082 1079881 - 1078457 - | ATP-dependent DNA helicase RecQ TERM 1278 1079840 - 1079862 + g 84 -2 -5.80248 | opp_overlap 1079840, overlap 1079844 1079857 CTCAGTAAAATTAAA TTTCTCATGT AAG ACTTGATAAA TTTTTTTATCTGTTA PEPE_1083 1080896 - 1079868 - | hypothetical protein PEPE_1084 1081618 - 1080893 - | ribosomal large subunit pseudouridine synthase B TERM 1279 1081126 - 1081137 + g 79 -2.2 -5.67063 | TAATTAAGTGTGCTT TAGC TTTA GCTG TTTTTTTATGATCAA PEPE_1085 1082209 - 1081619 - | condensin subunit ScpB PEPE_1086 1082937 - 1082209 - | condensin subunit ScpA PEPE_1087 1083286 - 1082927 - | riboflavin biosynthesis acetyltransferase RibT PEPE_1088 1084189 - 1083302 - | tyrosine recombinase XerD subunit PEPE_1089 1085058 - 1084192 - | RNA-binding protein PEPE_1090 1085534 - 1085076 - | hypothetical protein TERM 1280 1085685 - 1085662 - H 95 -8.8 -5.30155 | overlap 1085676 TTAGTAATTAAAAAA CTGACCGTCA AAAA CGACGGACAG CCCTTCGCAGAAGCA TERM 1281 1085690 - 1085713 + H 71 -3.2 -5.2204 | gap 1, opp_overlap 1085676, overlap 1085695 ACGACGGACAGCCCT TCGCAGAAGCA CAA TGCTTCT-CAA TTTTTATTCATTCTA TERM 1282 1085695 - 1085709 + H 71 -8.6 -2.93316 | overlap 1085690 GGACAGCCCTTCGCA GAAGCA CAA TGCTTC TCAATTTTTATTCAT PEPE_1091 1085993 - 1086358 + | hypothetical protein TERM 1283 1086432 - 1086397 - T 100 -10.7 -4.8622 | opp_overlap 1086397 TGTTTTAACTAAAAA GGGATACTACTAA TTTCATTACT TTAGTAGTATCCC TTTTTAGTTAAATCT TERM 1284 1086397 - 1086432 + T 100 -10.7 -4.89009 | opp_overlap 1086397 TGTTTTAACTAAAAA GGGATACTACTAA TTTCATTACT TTAGTAGTATCCC TTTTTAGTTAAATCT TERM 1285 1086518 - 1086496 - T 100 -11.4 -5.95539 | opp_overlap 1086496 TGCCAAACAAAAAAA CCTAGAACAT ATA ATGTTCCAGG TTTTAAAAATTTAAA TERM 1286 1086496 - 1086518 + T 88 -9.2 -4.17089 | opp_overlap 1086496 TGCCAAACAAAAAAA CCTAGAACAT ATA ATGTTCCAGG TTTTAAAAATTTAAA PEPE_1092 1088305 - 1086542 - | pyruvate kinase TERM 1287 1087654 - 1087670 + g 70 -5.2 -4.63486 | TCTTAGGGAAAATTT GAACAT CTTCC ATGTTC TTTTCTTCCAACAAT TERM 1288 1088352 - 1088340 - R 76 -6.3 -4.61566 | opp_overlap 1088339 1088340 TTTTAAATTATAAAA GACTT CTT AAGTC ATTTTATCCAAATAT PEPE_1093 1089346 - 1088378 - | 6-phosphofructokinase TERM 1289 1088712 - 1088723 + g 72 -5.8 -4.44355 | ATGCCGTAGTCCTTA CCGT TTGC ACGG TTCTTTTTCAACTTG PEPE_1094 1092792 - 1089469 - | DNA polymerase III catalytic subunit, DnaE type TERM 1290 1090582 - 1090565 - G 74 -7.7 -3.9122 | opp_overlap 1090565, overlap 1090581 TACGTTTTTAAATAA GCCAGCT GAAA AGCTAGC TTGCTATAAGCTACG TERM 1291 1091218 - 1091241 + g 73 -8.2 -3.55122 | opp_overlap 1091224 CTCAACATAATTCTT GGAATACTGA CTCA TCAGCATTCC TTCATTTCCATCCTG PEPE_1095 1092919 - 1093092 + | hypothetical protein TERM 1292 1093134 - 1093090 - T 88 -6.6 -5.2696 | gap 1, opp_overlap 1093093, overlap 1093093 1093102 TCAAAACCTAAAAAA TAAGGATGCAAATCTTTGGTA TTTT TACCAAAGAGA-GCATCCTTT TTTTATTTATTCTGG TERM 1293 1093093 - 1093131 + T 100 -8.3 -6.08342 | gap 1, opp_overlap 1093090 1093093 1093102 AAACCTAAAAAATAA GGATGCAAATCTTTGGTA TTTT TACCAAAGAGA-GCATCC TTTTTTTATTTATTC TERM 1294 1093131 - 1093093 - T 85 -8.3 -4.68528 | gap 1, opp_overlap 1093093, overlap 1093090 1093102 AAACCTAAAAAATAA GGATGCAAATCTTTGGTA TTTT TACCAAAGAGA-GCATCC TTTTTTTATTTATTC TERM 1295 1093123 - 1093102 - T 87 -10.3 -3.74658 | opp_overlap 1093093, overlap 1093093 1093090 AAATAAGGATGCAAA TCTTTGGTA TTTT TACCAAAGA GAGCATCCTTTTTTT PEPE_1096 1095728 - 1093137 - | ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones PEPE_1097 1096539 - 1095748 - | hypothetical protein TERM 1296 1096273 - 1096257 - G 79 -8.1 -4.18934 | opp_overlap 1096257 1096256 1096253 1096252 TATGAGCTGAATAAA CCAAAAT CGA ATTTTGG ATTAATTTAGCGTAC PEPE_1098 1097227 - 1096529 - | SAM-dependent methyltransferase TERM 1297 1097311 - 1097279 - R 84 -5.5 -5.41143 | TATCTTTCAAAAAAA GGTCCTGCACAAATC TAC GACCTGCACGGAACC TCTTGGGTTAACTAA PEPE_1099 1098462 - 1097323 - | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) TERM 1298 1098203 - 1098213 + g 74 -5.4 -4.75174 | TTAGAAATTTCTTGA GCTT TCA AAGC TTTTTCACTTGGATC PEPE_1100 1100342 - 1098480 - | DNA primase TERM 1299 1100506 - 1100539 + r 100 -14.1 -5.24515 | opp_overlap 1100506 AGATATAGGAAGAAA CAAGCCATTTAATCT CGTT AGACTAAATGGCTTG TTTTATTTATTTATT TERM 1300 1100539 - 1100506 - R 100 -16.3 -4.31895 | opp_overlap 1100506 AGATATAGGAAGAAA CAAGCCATTTAATCT CGTT AGACTAAATGGCTTG TTTTATTTATTTATT PEPE_1101 1102666 - 1100594 - | glycyl-tRNA synthetase, beta subunit TERM 1301 1101253 - 1101200 - G 70 -9.1 -3.06302 | gap 1, opp_overlap 1101208 1101212, overlap 1101202 1101211 1101212 ATCACGGCTATTTAA GATTCTAACAATTCCATATGCATGTC GGC GTAATGCATATGG-ATCGTTTGAACC ACTTGGAATCATACC TERM 1302 1101242 - 1101212 - G 74 -9.8 -2.80499 | opp_overlap 1101208 1101212, overlap 1101211 1101202 1101200 TAAGATTCTAACAAT TCCATATGCATGTC GGC GTAATGCATATGGA TCGTTTGAACCACTT TERM 1303 1101212 - 1101242 + g 75 -9.8 -2.90992 | opp_overlap 1101212 1101211 1101202 1101200, overlap 1101208 TAAGATTCTAACAAT TCCATATGCATGTC GGC GTAATGCATATGGA TCGTTTGAACCACTT glyQ 1103565 - 1102666 - | glycyl-tRNA synthetase subunit alpha TERM 1304 1103385 - 1103366 - G 72 -8.6 -3.28712 | gap 1, opp_overlap 1103363 GGGTTTTCTCCATAA CGTCCGTCC GCT GGACG-ACG TGATGGTTCAACATA TERM 1305 1103635 - 1103599 - R 100 -19.7 -5.626 | TAGCGGACAAAAAAA TCCCTACGCAGTGTACT AAA AATACACTACGTAGGGA CGACAAGAGTCGCGG PEPE_1103 1104600 - 1103839 - | DNA replication and repair protein RecO PEPE_1104 1105517 - 1104603 - | GTPase PEPE_1105 1105929 - 1105540 - | diacylglycerol kinase PEPE_1106 1106377 - 1105907 - | metal-dependent hydrolase PEPE_1107 1107351 - 1106383 - | phosphate starvation-inducible protein PhoH, ATPase PEPE_1108 1107806 - 1107363 - | GatB/YqeY domain-containing protein TERM 1306 1107857 - 1107839 - R 100 -13.2 -5.75478 | AAGTATACAAAAAAA GCTCCTGA AAT TCAGGAGC AATGATCGGATTAGA rpsU 1108053 - 1107868 - | 30S ribosomal protein S21 PEPE_1110 1108252 - 1109061 + | hypothetical protein TERM 1307 1109072 - 1109121 + T 82 -5.1 -5.37865 | opp_overlap 1109072, overlap 1109085 TATAAAACCAAAAAA TGTCATAAGGCACCGAGATAA ATATCTCG TTATCACATTGCCCTATGACA TTTTTTAATTATTGA TERM 1308 1109121 - 1109072 - T 100 -9.5 -5.50313 | opp_overlap 1109072 1109085 TATAAAACCAAAAAA TGTCATAAGGCACCGAGATAA ATATCTCG TTATCACATTGCCCTATGACA TTTTTTAATTATTGA PEPE_1111 1110016 - 1109126 - | endonuclease IV PEPE_1112 1111224 - 1110013 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase PEPE_1113 1112374 - 1111217 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase PEPE_1114 1113263 - 1112385 - | hypothetical protein TERM 1309 1112472 - 1112445 - G 72 -7 -3.95073 | gap 1 GGTGATACTTACAAA GGC-ATGGGGATC AGA GACCTCCATCGCC GCTTCCAATTCCGGC TERM 1310 1113400 - 1113383 - R 91 -5.6 -5.83226 | opp_overlap 1113383 1113376 1113375, overlap 1113375 AATCCAATAAAAAAA GAGGAT TTAACC ATCCTC TTTTTTCTAGTTTCT TERM 1311 1113383 - 1113400 + r 84 -5.6 -5.43621 | opp_overlap 1113375 1113383, overlap 1113376 1113375 AATCCAATAAAAAAA GAGGAT TTAACC ATCCTC TTTTTTCTAGTTTCT aspS 1115199 - 1113418 - | aspartyl-tRNA synthetase PEPE_1116 1116487 - 1115213 - | histidyl-tRNA synthetase TERM 1312 1116550 - 1116525 - H 100 -14.8 -5.34857 | opp_overlap 1116527, overlap 1116545 TCAAAGAAAATAAAA GACGCCCTTG ATTTAA CAAGGGCGTC TTGACGCGGTACCAC TERM 1313 1116527 - 1116548 + H 87 -11.6 -3.02511 | opp_overlap 1116525 1116545 AAAGAAAATAAAAGA CGCCCTTG ATTTAA CAAGGGCG TCTTGACGCGGTACC PEPE_1117 1116830 - 1117699 + | N-acetylmuramoyl-L-alanine amidase PEPE_1118 1118307 - 1117669 - | P-Ser-HPr phosphatase PEPE_1119 1118851 - 1118402 - | D-tyrosyl-tRNA deacylase PEPE_1120 1121092 - 1118861 - | guanosine polyphosphate pyrophosphohydrolase/synthetase TERM 1314 1119598 - 1119610 + g 72 -5.5 -4.66264 | opp_overlap 1119598 CCAATTGCTTAGCAA GGATG TCC CGTCC TTTTTCAACATTTTC TERM 1315 1119764 - 1119748 - G 71 -9.5 -2.65161 | opp_overlap 1119748 1119750, overlap 1119747 1119745 1119750 AAATTTCAACAATAT CACCATT TTT AATGGTG TAATCTAAAGGAACG TERM 1316 1119748 - 1119764 + g 71 -9.5 -2.62184 | opp_overlap 1119747 1119745 1119748 1119750, overlap 1119750 AAATTTCAACAATAT CACCATT TTT AATGGTG TAATCTAAAGGAACG TERM 1317 1121149 - 1121126 - R 88 -7.4 -4.98917 | opp_overlap 1121126 CAAAATACAATAAAA GCACGGAATC AAAT GACTACGTGC TTCGCTTTTATTGAA PEPE_1121 1121529 - 1121200 - | hypothetical protein PEPE_1122 1122281 - 1121544 - | hypothetical protein TERM 1318 1121720 - 1121708 - G 72 -9.1 -3.33315 | opp_overlap 1121707 1121708 CGAAGACGGCTAGAA GCTGG TCT CCAGC CTTTAGTTGCAATAG PEPE_1123 1123241 - 1122291 - | 50S ribosomal protein L11P methyltransferase TERM 1319 1123207 - 1123165 - G 95 -14.2 -2.75074 | opp_overlap 1123166, overlap 1123162 1123181 1123182 TTCACTCCAACAGCA TCGAGGCCATCGAAAATGCT GCT AACAGCTTCGACGGCCTCGT TTGTTGTTTTGACGT TERM 1320 1123166 - 1123206 + g 90 -11.1 -4.67697 | opp_overlap 1123165 1123162 1123181 1123182 TCACTCCAACAGCAT CGAGGCCATCGAAAATGCT GCT AACAGCTTCGACGGCCTCG TTTGTTGTTTTGACG PEPE_1124 1124607 - 1123315 - | xanthine/uracil permease TERM 1321 1124663 - 1124635 - R 100 -14 -4.96848 | opp_overlap 1124635 CCTTTCATAGAAAAA GCCTCTTAGATC GATGT GATCCAAGAGGC TTCAGTAAATTCTAT TERM 1322 1124635 - 1124663 + r 90 -12.5 -3.11173 | opp_overlap 1124635 CCTTTCATAGAAAAA GCCTCTTAGATCG ATG TGATCCAAGAGGC TTCAGTAAATTCTAT PEPE_1125 1125068 - 1124805 - | hypothetical protein TERM 1323 1125517 - 1125507 - g 76 -4 -5.18643 | opp_overlap 1125507 TGAATCAAAATAAAA CAAA AGG TTTG TTATTTGCAATCTTA TERM 1324 1125670 - 1125689 + G 76 -3.6 -5.31275 | TAGTTTTTTAAAAAA TGGTAGGA AGAT TTTTACCA TTTTTTATACTAAAA PEPE_1126 1125491 - 1126390 + | DMT family permease TERM 1325 1126397 - 1126426 + T 100 -10.9 -5.46657 | opp_overlap 1126397 ATTGTTTAATAAAAA TGCACTACTAGTT TTAA AACTAGTAATGCA TTTTTTATTCCAGTG TERM 1326 1126426 - 1126397 - T 100 -13.1 -5.06816 | opp_overlap 1126397 ATTGTTTAATAAAAA TGCACTACTAGTT TTAA AACTAGTAATGCA TTTTTTATTCCAGTG PEPE_1127 1127168 - 1126431 - | nitroreductase TERM 1327 1127543 - 1127499 - R 89 -10.3 -3.85817 | opp_overlap 1127504, overlap 1127504 ACCGCTTGTTAGAAA TAAAATAGCTTAAAGCCTT TCATATC AAGGCATTAAGCTATTTTT TTGTTTTTGTAGTTC TERM 1328 1127504 - 1127538 + r 100 -10.2 -6.23317 | opp_overlap 1127504 1127499 TTGTTAGAAATAAAA TAGCTTAAAGCCTT TCATATC AAGGCATTAAGCTA TTTTTTTGTTTTTGT TERM 1329 1127538 - 1127504 - R 100 -10.2 -4.99043 | opp_overlap 1127504, overlap 1127499 TTGTTAGAAATAAAA TAGCTTAAAGCCTT TCATATC AAGGCATTAAGCTA TTTTTTTGTTTTTGT TERM 1330 1127894 - 1127869 - R 100 -8.3 -5.64421 | ATTTTAAATAAAAAA GCTCCCTAGTC ATTG GACTAGCAAGC TAAAATAAGTAGATA PEPE_1129 1128441 - 1127923 - | adenine phosphoribosyltransferase TERM 1331 1128185 - 1128195 + g 78 -5.4 -5.1101 | TTAACGGTTTCTCGG GGAA GTT TTCC TTTTTTACGTGCTGG PEPE_1130 1130764 - 1128443 - | exonuclease RecJ TERM 1332 1129009 - 1128995 - G 74 -5 -5.00616 | CTTTTGGTTAAAAAA GACATA TTG CATGTC ACTCTTAAATAAGTT TERM 1333 1130060 - 1130049 - G 75 -4.4 -5.14965 | ATCTTTACCAAAAAA CGAT TTTC ATCG GTCATTGAAACCAAA PEPE_1131 1131563 - 1130778 - | Short-chain dehydrogenase of various substrate specificities PEPE_1132 1132507 - 1131581 - | beta-lactamase superfamily hydrolase PEPE_1133 1132632 - 1132922 + | hypothetical protein PEPE_1134 1134289 - 1132997 - | GTPase uvrC 1136132 - 1134348 - | excinuclease ABC subunit C TERM 1334 1135495 - 1135505 + g 76 -5.4 -4.93595 | overlap 1135499 CGTTCAAATTCCATT GCTT CAG AAGC TTTTTGCATTTTTGT TERM 1335 1136244 - 1136205 - R 85 -11 -3.26844 | gap 1, opp_overlap 1136205 1136211 1136212, overlap 1136212 TTCAGCAACTAAAAC GAAAAAACAGGTAGTAGTA TTA CACT-CTACCTGCTTTTCC TATTTGACTAAAATT TERM 1336 1136237 - 1136212 - R 100 -7.7 -5.48054 | gap 1, opp_overlap 1136211 1136205 1136212, overlap 1136205 ACTAAAACGAAAAAA CAGGTAGTAGTA TTA CACT-CTACCTG CTTTTCCTATTTGAC PEPE_1136 1136987 - 1136244 - | ABC-type polar amino acid transport system, ATPase component PEPE_1137 1138446 - 1136980 - | ABC-type amino acid transport system, permease and periplasmic component TERM 1337 1137690 - 1137703 + g 71 -3.9 -5.00611 | TTTTAGCTTTTATCT TACTA ATTG TAGTA TTTATTTTCTTTCTC PEPE_1138 1138635 - 1138778 + | hypothetical protein TERM 1338 1138817 - 1138776 - T 100 -12.5 -5.54264 | opp_overlap 1138780, overlap 1138780 AAAGATTCAAAAAAA TAAACCACAATCATCAGCA TTAA TGCTGTTAATTGTGGTTTT TTATTTACTTAAAGT TERM 1339 1138780 - 1138813 + T 100 -11.1 -5.72053 | opp_overlap 1138780 1138776 ATTCAAAAAAATAAA CCACAATCATCAGCA TTAA TGCTGTTAATTGTGG TTTTTTATTTACTTA TERM 1340 1138813 - 1138780 - T 100 -13.3 -5.21683 | opp_overlap 1138780, overlap 1138776 ATTCAAAAAAATAAA CCACAATCATCAGCA TTAA TGCTGTTAATTGTGG TTTTTTATTTACTTA PEPE_1139 1139112 - 1138822 - | pyrophosphatase PEPE_1140 1139701 - 1139114 - | GTPase EngB TERM 1341 1139788 - 1139757 - R 100 -8.2 -5.84381 | gap 1, opp_overlap 1139761 GGATCAACAAAAAAA GAACCAGACTA-AAG GAA CTTATAGCCTGATTC TTAAAACTTAGACTA clpX 1141057 - 1139801 - | ATP-dependent protease ATP-binding subunit TERM 1342 1140401 - 1140411 + g 72 -5.4 -4.57341 | overlap 1140384 AACATTAGCAATTGT TCCT TCT AGGA TTTTTAAAAGGGCTT TERM 1343 1141033 - 1141017 - G 74 -5.1 -4.91109 | opp_overlap 1141017 GTCTTACCACAAAAA GAACAAG TAA CTGGTTC ATTCGTTTGTTGATC TERM 1344 1141180 - 1141154 - R 100 -13.2 -5.47159 | opp_overlap 1141157, overlap 1141148 GTTAATAAACAAAAA CGATTTTGAGAT AAA ACCTCAAAATCG TTAAAAATAGTTTTA PEPE_1142 1142504 - 1141197 - | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) TERM 1345 1141303 - 1141316 + g 73 -3.8 -5.10461 | opp_overlap 1141303, overlap 1141297 ATATCTTCTGAAAGA GCTG AGCGAA CAGC TTTTTCTTCCATGCC TERM 1346 1142611 - 1142624 + r 100 -9.5 -5.06816 | opp_overlap 1142611 AATACAACAAAAAAA CCCGC AAAA GCGGG TTTTTATTAAGCAAT TERM 1347 1142624 - 1142611 - R 100 -9.5 -5.94214 | opp_overlap 1142611 AATACAACAAAAAAA CCCGC AAAA GCGGG TTTTTATTAAGCAAT PEPE_1143 1143832 - 1142645 - | elongation factor Tu TERM 1348 1143600 - 1143611 + g 77 -5.8 -4.83032 | opp_overlap 1143600 GGAGCATCGATATGA GCGT AATG ACGC TTTTCTGTTTCATAT PEPE_1144 1144882 - 1144016 - | BS_ysoA-like protein TERM 1349 1144545 - 1144565 + g 72 -7.7 -3.85835 | GCAATCGCATATTCA TTTTCTTGA TTC TCGAGAAAA TTTAAATATTTCTTT PEPE_1145 1146641 - 1144884 - | metallo-beta-lactamase superfamily hydrolase TERM 1350 1146545 - 1146574 + g 71 -4.4 -4.69868 | gap 1 CAGCATACATATTCT TTCCATTTTCGCG AACAC CGCCA-AATGGAA TTATTTTTATTGTGT TERM 1351 1146706 - 1146685 - R 100 -11.6 -5.93252 | GCCAAAAACAAAAAA GCCTCCTG AATTAA CAGGAGGC AAAAAAATATAATAT PEPE_1146 1146990 - 1146721 - | SSU ribosomal protein S15P PEPE_1147 1147196 - 1147450 + | SSU ribosomal protein S20P TERM 1352 1147478 - 1147448 - T 87 -10.7 -3.75863 | gap 1, opp_overlap 1147449 1147456, overlap 1147456 AAAATGCTTAGCAAA TAAAAAAACACCGG ATTT CCGGTG-TTTTTTA TTTCCATCCATTTTT TERM 1353 1147449 - 1147478 + T 95 -12.3 -3.7175 | opp_overlap 1147448 1147456, overlap 1147456 AAATGCTTAGCAAAT AAAAAAACACCGG ATTT CCGGTGTTTTTTA TTTCCATCCATTTTT TERM 1354 1147471 - 1147456 - T 100 -10.4 -5.99154 | opp_overlap 1147449 1147456, overlap 1147448 TAGCAAATAAAAAAA CACCGG ATTT CCGGTG TTTTTTATTTCCATC TERM 1355 1147456 - 1147471 + T 100 -10.4 -5.65927 | opp_overlap 1147456 1147448, overlap 1147449 TAGCAAATAAAAAAA CACCGG ATTT CCGGTG TTTTTTATTTCCATC TERM 1356 1147499 - 1147553 + T 100 -12.4 -3.8211 | opp_overlap 1147509 1147512 1147518, overlap 1147503 1147509 ATCCATTTTTAAATT TAACTAAGAACAACTCAAAGAGTTCC TTC GGATCTCGTTGGGTTGTTTTTAATTG TTCTTCTAAATCAAC PEPE_1148 1148495 - 1147476 - | DNA polymerase III, delta subunit TERM 1357 1147503 - 1147549 + g 100 -15.4 -3.0161 | opp_overlap 1147509 1147512 1147518, overlap 1147499 1147509 ATTTTTAAATTTAAC TAAGAACAACTCAAAGAGTTCC TTC GGATCTCGTTGGGTTGTTTTTA ATTGTTCTTCTAAAT TERM 1358 1147543 - 1147509 - G 81 -10 -3.84278 | opp_overlap 1147503 1147499 1147509, overlap 1147512 1147518 AAATTTAACTAAGAA CAACTCAAAGAGTTCC TTC GGATCTCGTTGGGTTG TTTTTAATTGTTCTT TERM 1359 1147509 - 1147543 + g 100 -12.2 -5.03201 | opp_overlap 1147509 1147512 1147518, overlap 1147503 1147499 AAATTTAACTAAGAA CAACTCAAAGAGTTCC TTC GGATCTCGTTGGGTTG TTTTTAATTGTTCTT PEPE_1149 1150597 - 1148492 - | metallo-beta-lactamase superfamily hydrolase TERM 1360 1149307 - 1149296 - G 72 -2.2 -5.22312 | ACCTACATCAAAAAA GGTA ATTT CACC ATACGGATTCAATTT TERM 1361 1149676 - 1149661 - G 74 -6.2 -4.6313 | TTGAAAATAAAATAA TTGGTA ATTC TACCAA AAATAATTTTATTCC TERM 1362 1150606 - 1150584 - G 93 -4.9 -5.83226 | overlap 1150598 AAGTGAATAAAAAAA CAGACACTA ATCAA TAATGCCTG CATTACCACTGTAAG PEPE_1150 1151225 - 1150743 - | deoxycytidylate deaminase PEPE_1151 1151951 - 1151244 - | DNA uptake protein related DNA-binding protein TERM 1363 1152010 - 1151989 - R 100 -7.4 -5.80248 | opp_overlap 1151988 1151989 1151991 GAAGATACAAAAAAA GATTGGAA TTTATT TTCCAATC CTTTAAATAGTCATT PEPE_1152 1152497 - 1152021 - | phosphopantetheine adenylyltransferase PEPE_1153 1153053 - 1152502 - | N6-adenine-specific methylase TERM 1364 1153001 - 1153011 + g 71 -8.2 -3.53444 | GGACGGGTTTTCATT CCCG GTA CGGG TTTCAAACGACGTCC PEPE_1154 1153310 - 1153050 - | hypothetical protein PEPE_1155 1154520 - 1153312 - | cell division membrane protein TERM 1365 1153897 - 1153882 - G 82 -4.7 -5.36965 | overlap 1153884 TAATAGTATAAAAAA TGCTG CTAATC CAGCA AATATTCCCGCAACA TERM 1366 1154051 - 1154073 + g 74 -9.3 -3.0792 | GGACTCCACGTTACC TTAGGAGAA ATTTC TTCTCCTAA TTCAATCCGATGTTG TERM 1367 1154403 - 1154390 - G 81 -6.7 -4.96848 | TTCTGGATATAAAAA TCAGC ACTG GCTGA GTAGACCATTACAAT TERM 1368 1154580 - 1154624 + r 95 -8.9 -5.00884 | opp_overlap 1154584 1154592, overlap 1154584 1154587 1154592 GTACTACGCTCCTTA AAAATAAAAAAAGACGAAAAT TAA ATTTTCGTCTTTTCTTAATTA TTTTTTAGCAGCCAT TERM 1369 1154620 - 1154584 - R 100 -16.3 -4.57073 | opp_overlap 1154580 1154584 1154587 1154592, overlap 1154592 TACGCTCCTTAAAAA TAAAAAAAGACGAAAAT TAA ATTTTCGTCTTTTCTTA ATTATTTTTTAGCAG TERM 1370 1154584 - 1154620 + r 100 -14.1 -3.36166 | opp_overlap 1154584 1154592, overlap 1154580 1154587 1154592 TACGCTCCTTAAAAA TAAAAAAAGACGAAAAT TAA ATTTTCGTCTTTTCTTA ATTATTTTTTAGCAG TERM 1371 1154587 - 1154617 + r 95 -11.4 -3.79788 | opp_overlap 1154584 1154592, overlap 1154584 1154580 1154592 GCTCCTTAAAAATAA AAAAAGACGAAAAT TAA ATTTTCGTCTTTTC TTAATTATTTTTTAG TERM 1372 1154592 - 1154612 + r 100 -11.3 -4.85618 | opp_overlap 1154592 1154584, overlap 1154587 1154584 1154580 TTAAAAATAAAAAAA GACGAAAAT TAA ATTTTCGTC TTTTCTTAATTATTT TERM 1373 1154612 - 1154592 - R 100 -11.3 -6.20267 | opp_overlap 1154587 1154584 1154580 1154592, overlap 1154584 TTAAAAATAAAAAAA GACGAAAAT TAA ATTTTCGTC TTTTCTTAATTATTT PEPE_1156 1156466 - 1154622 - | stress response membrane GTPase TERM 1374 1155151 - 1155136 - G 70 -6.2 -4.23045 | opp_overlap 1155135 GAAGGAGCCAAGAAA GTCAAA CGAG TTTGAC CATTATCAGTAGTTT TERM 1375 1156534 - 1156510 - R 95 -5.7 -5.80817 | overlap 1156511 CTTAACATAAAAAAA CCTGTGACG TCTAATT CGTCACAGC ATAATGCTATTTCAC TERM 1376 1156533 - 1156511 - R 85 -9.2 -4.06863 | overlap 1156510 TTAACATAAAAAAAC CTGTGACG TCTAATT CGTCACAG CATAATGCTATTTCA PEPE_1157 1157326 - 1156541 - | fructose-1 6-bisphosphatase TERM 1377 1156765 - 1156785 + g 70 -2.5 -5.04987 | opp_overlap 1156768, overlap 1156768 1156770 TTCCTGCACTGCCAA TAACTCTAG CTC CTAGCGTTC TTTTTTCAACGTCTT PEPE_1158 1157609 - 1157310 - | hypothetical protein TERM 1378 1157772 - 1157745 - g 82 -8.4 -4.25104 | overlap 1157730 CCCGTTTTACGAAAA CGTGCTGAAAAG CTTA CTTTTCCGCTCG ATCCTAAATATCTCA def 1157694 - 1158248 + | peptide deformylase PEPE_1160 1158812 - 1158345 - | hypothetical protein PEPE_1161 1158975 - 1159190 + | RNA-binding protein PEPE_1162 1159195 - 1160871 + | mRNA degradation ribonuclease J1/J2enzyme TERM 1379 1160929 - 1160879 - T 100 -8.5 -5.5112 | gap 1, opp_overlap 1160879 TGGATTAATAAAAAA CGCAATCTTATCAAAC-TCTGAGA TAAA TCTCTAATGATTGAAAAGATTGCG TTTTTATTTAGCTAT TERM 1380 1160879 - 1160929 + T 84 -6.3 -5.31519 | gap 1, opp_overlap 1160879 TGGATTAATAAAAAA CGCAATCTTATCAAAC-TCTGAGA TAAA TCTCTAATGATTGAAAAGATTGCG TTTTTATTTAGCTAT TERM 1381 1161002 - 1161031 + T 100 -6.5 -5.87996 | opp_overlap 1161002 AGGTAAAATAAAAAA CGTCTCAACTAAC CTAG GTTAATTGAAACG TTTTTTTCTTAGTTA TERM 1382 1161031 - 1161002 - T 100 -10.9 -5.80951 | opp_overlap 1161002 AGGTAAAATAAAAAA CGTCTCAACTAAC CTAG GTTAATTGAAACG TTTTTTTCTTAGTTA PEPE_1163 1162540 - 1161050 - | cell wall hydrolase TERM 1383 1162373 - 1162387 + g 71 -4.2 -4.84359 | overlap 1162375 TGATTCAATGCTTTT AACGGA AAC TCCGTA TTTTTGTGAAAGTGC TERM 1384 1162375 - 1162385 + g 71 -6.8 -4.04397 | overlap 1162373 ATTCAATGCTTTTAA CGGA AAC TCCG TATTTTTGTGAAAGT TERM 1385 1162863 - 1162833 - R 100 -14.3 -5.70829 | AATATTACAAAAAAA GAGTATTGTTACA AAGAA TGTAACAATACTC CCAAGTTAAACCATA TERM 1386 1162886 - 1162909 + r 74 -4 -5.23016 | opp_overlap 1162890, overlap 1162880 1162888 AAACCATATTTTTTA TACATAAAAA TGAA TTTTTATGCA TTTTTTGAATTCTTT PEPE_1164 1164816 - 1162903 - | fusion of IIA, IIB and IIC component of mannitol/fructose-specific phosphotransferase system mannitol/fructose-specific TERM 1387 1163271 - 1163255 - G 74 -8.7 -3.64822 | ATTGCTGTAGCTAAA GGTGGAA TCA TCCCACC CACCATTACAGCAGC PEPE_1165 1165739 - 1164828 - | tagatose-6-phosphate kinase PEPE_1166 1166485 - 1165736 - | lactose transport regulator TERM 1388 1166608 - 1166585 - R 100 -7.4 -5.58454 | opp_overlap 1166585, overlap 1166587 TTTACATCAAAAAAA GACGCCTATC ACTT GATAGACGAC TTCTAAATTATTCAA TERM 1389 1166606 - 1166587 - R 88 -8.6 -4.42962 | opp_overlap 1166585, overlap 1166585 TACATCAAAAAAAGA CGCCTATC ACTT GATAGACG ACTTCTAAATTATTC PEPE_1167 1167668 - 1166616 - | permease TERM 1390 1167449 - 1167438 - G 76 -3.6 -5.29208 | AAAAGAAAAAACAAA GCCC GCAA AGGC CAGTAAAACAATATA TERM 1391 1167601 - 1167591 - G 70 -2.6 -5.06816 | ATCTCTTAATAAAAA TATT ATC AATA TTAGCGCTACTAGCG PEPE_1168 1168736 - 1167759 - | phosphoribosylpyrophosphate synthetase TERM 1392 1168695 - 1168714 + g 80 -2.9 -5.56372 | ATGATTTGAATTCAA GGAGAAT ATTTTC ATTCTTC TTTTTGTTTTACTTT PEPE_1169 1171249 - 1168805 - | ATP-dependent RecD/TraA family DNA helicase PEPE_1170 1171899 - 1171249 - | TPR repeat-containing protein PEPE_1171 1172587 - 1171913 - | fructose-2,6-bisphosphatase TERM 1393 1172665 - 1172685 + r 90 -8.3 -4.75174 | opp_overlap 1172665 CAAAAAACAAAAAAA GAACCAGAC TAA GTCTGATTC TTTTTAAATTAGATG TERM 1394 1172685 - 1172665 - R 100 -10.5 -6.28401 | opp_overlap 1172665 CAAAAAACAAAAAAA GAACCAGAC TAA GTCTGATTC TTTTTAAATTAGATG PEPE_1172 1173827 - 1172694 - | tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase PEPE_1173 1174290 - 1173949 - | hypothetical protein PEPE_1174 1175466 - 1174306 - | cysteine sulfinate desulfinase/cysteine desulfurase PEPE_1175 1176167 - 1175466 - | methylthioadenosine nucleosidase PEPE_1176 1176439 - 1176179 - | small membrane protein TERM 1395 1176395 - 1176424 + g 83 -3.7 -5.55769 | gap 1 TTCTGTTTCTTTTTG CAAACTCCT-TTGA TAT TCAGCACGAGTTTG TTTTTTCTTATCCAA PEPE_1177 1176987 - 1176448 - | NUDIX family hydrolase PEPE_1178 1177199 - 1176990 - | cold-shock DNA-binding protein family protein TERM 1396 1177258 - 1177307 + r 76 -5.4 -5.08601 | gap 1, opp_overlap 1177264 1177271, overlap 1177259 GGTGGAAAACACTTC T-GTAAATTAAAAATGATTAGGT TACTC GCCTAATCATTCTTAATTAACTA TTTTTCTTCAAATCC TERM 1397 1177259 - 1177305 + r 95 -10.5 -4.16909 | opp_overlap 1177264 1177271, overlap 1177258 GTGGAAAACACTTCT GTAAATTAAAAATGATTAGGT TACTC GCCTAATCATTCTTAATTAAC TATTTTTCTTCAAAT TERM 1398 1177300 - 1177264 - R 85 -10.5 -3.55815 | opp_overlap 1177259 1177258, overlap 1177271 AAACACTTCTGTAAA TTAAAAATGATTAGG TTACTCG CCTAATCATTCTTAA TTAACTATTTTTCTT TERM 1399 1177293 - 1177271 - R 82 -6.4 -4.98531 | opp_overlap 1177259 1177258, overlap 1177264 TCTGTAAATTAAAAA TGATTAGG TTACTCG CCTAATCA TTCTTAATTAACTAT PEPE_1179 1180106 - 1177305 - | isoleucyl-tRNA synthetase TERM 1400 1180167 - 1180140 - R 100 -12.8 -5.54338 | opp_overlap 1180142 CAAGTAAAATAAAAA GACTCCATCCCT TAAC AGGGACGAAGTC TTCGCGGTACCACCC TERM 1401 1180192 - 1180206 + r 76 -8.6 -3.50335 | opp_overlap 1180192, overlap 1180188 CCACCCAAATTTAAA GACCAT TAA ATGGTC TTCCTCTTTGTAGCA TERM 1402 1180206 - 1180192 - R 79 -8.6 -3.85909 | opp_overlap 1180188 1180192 CCACCCAAATTTAAA GACCAT TAA ATGGTC TTCCTCTTTGTAGCA TERM 1403 1180340 - 1180350 + r 80 -5.4 -5.15117 | AAGATGCTACATTTT GAAG ATT CTTC TTTTTTAACGTTTTA PEPE_1180 1181094 - 1180363 - | cell division initiation protein PEPE_1181 1181903 - 1181118 - | cell division protein PEPE_1182 1182178 - 1181906 - | cell division membrane protein TERM 1404 1182220 - 1182252 + r 77 -7.7 -4.13571 | opp_overlap 1182224 1182225, overlap 1182225 TTGTCCTAATTGCAA TAAACGGGCTTGAGC TTA GCCCAAACCCTTTTA TTATATTTTATTTGC TERM 1405 1182248 - 1182224 - R 87 -8.5 -4.20918 | opp_overlap 1182220 1182225, overlap 1182225 CCTAATTGCAATAAA CGGGCTTGAGC TTA GCCCAAACCCT TTTATTATATTTTAT TERM 1406 1182247 - 1182225 - R 89 -12 -3.12069 | opp_overlap 1182225 1182220, overlap 1182224 CTAATTGCAATAAAC GGGCTTGAGC TTA GCCCAAACCC TTTTATTATATTTTA TERM 1407 1182225 - 1182247 + r 89 -7.6 -4.98917 | opp_overlap 1182224 1182225, overlap 1182220 CTAATTGCAATAAAC GGGCTTGAGC TTA GCCCAAACCC TTTTATTATATTTTA PEPE_1183 1183579 - 1182260 - | cell division protein FtsZ TERM 1408 1182591 - 1182622 + g 73 -2.9 -5.28176 | TCAAAAGAGGTGCGT GCTGGTTGACGGT GTAAAG ACGCTCTACCAGC TTTTTTATCAATACC TERM 1409 1183306 - 1183287 - G 72 -8.6 -3.25358 | GTAACAAAAATCATA TCTGCTCC TTCA AGAGCAGA GGAAATGGTTTGTTG PEPE_1184 1184962 - 1183601 - | cell division protein FtsA TERM 1410 1184173 - 1184194 + g 70 -5.9 -4.24422 | opp_overlap 1184176 TACTTGCTTGATCAG CAACAGCAT AACC ATACTGTTG TTTAATTTGTTCTGC TERM 1411 1184737 - 1184718 - G 71 -6.4 -4.16842 | overlap 1184719 1184721 TCTATTCTTAATAAA TTAGCTGG AATA CCAGCTAC TACGTCGTGGATTTG TERM 1412 1184736 - 1184719 - G 76 -9.9 -3.09784 | overlap 1184718 1184721 CTATTCTTAATAAAT TAGCTGG AATA CCAGCTA CTACGTCGTGGATTT TERM 1413 1185164 - 1185191 + r 75 -4.9 -4.96848 | opp_overlap 1185164 AATAGCACTTAAAAA TCGTTTGACCC TTTAGT GGATTAAACGA TTTTTATCTAAGAGC PEPE_1185 1186372 - 1185260 - | cell division protein FtsQ PEPE_1186 1187475 - 1186387 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase PEPE_1187 1188847 - 1187480 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 1414 1188791 - 1188772 - G 77 -6.4 -4.68384 | opp_overlap 1188774 ATCTATGTAATAAAA GAGCGG CGCTTATT CCGCTC TTGGCCATTCCTAAA PEPE_1188 1189817 - 1188861 - | phospho-N-acetylmuramoyl-pentapeptide-transferase PEPE_1189 1191999 - 1189834 - | cell division protein FtsI/penicillin-binding protein 2 PEPE_1190 1192382 - 1191996 - | cell division protein FtsL PEPE_1191 1193342 - 1192398 - | SAM-dependent methyltransferase for cell envelope biogenesis TERM 1415 1193371 - 1193390 + r 80 -6.4 -4.76213 | overlap 1193372 CAAAGTCAATTAAAT TTTCGGCG ATAT CGTCGAAG TTTTCTTCAGTTTCT TERM 1416 1193372 - 1193389 + r 71 -7.7 -3.44101 | overlap 1193371 AAAGTCAATTAAATT TTCGGCG ATAT CGTCGAA GTTTTCTTCAGTTTC PEPE_1192 1193779 - 1193348 - | hypothetical protein TERM 1417 1193584 - 1193571 - G 71 -4.5 -4.78848 | opp_overlap 1193571 TCTGCAAACATAAAA CGTAC AAAT GCACG ATTATTCTTCTTATT PEPE_1193 1194022 - 1194150 + | hypothetical protein TERM 1418 1194169 - 1194193 + T 100 -13.1 -5.80727 | opp_overlap 1194169 GAATATAAAAAAAAA GATTTAAGACA GAT TGTCTTAAATC TTTTTTATTCTTTTT TERM 1419 1194193 - 1194169 - T 100 -13.1 -6.35605 | opp_overlap 1194169 GAATATAAAAAAAAA GATTTAAGACA GAT TGTCTTAAATC TTTTTTATTCTTTTT PEPE_1194 1196549 - 1194198 - | DNA segregation ATPase FtsK/SpoIIIE related protein TERM 1420 1194691 - 1194673 - G 72 -7.4 -3.91084 | TTAGCTTTAATCAAA CCGGTAAC CAC GTTAACGG ACGGACGTTGTGTCG PEPE_1195 1197076 - 1196558 - | rRNA methylase (SpoU class) TERM 1421 1197144 - 1197110 - R 91 -8 -4.93365 | opp_overlap 1197110 TTTTAGAATTAAAAA CGCAGATACTCG GTATTACGCGG CGAGTATCTACG TTCGTGAAGTCAATC PEPE_1196 1198396 - 1197254 - | permease TERM 1422 1197833 - 1197815 - G 74 -5.3 -4.73973 | overlap 1197816 ATAGAAAAGAATAAA CGGCATT GTAAT AATGCCA ATAACTATTTTGGTA PEPE_1197 1198766 - 1198410 - | glucitol/sorbitol PTS, EIIA TERM 1423 1199748 - 1199785 + G 72 -5 -4.77036 | opp_overlap 1199748 TCAGTGTTGAAGGAA GTTTTCCTCGTGACTT TGCTTT AAGTCATGAACAAAAC TTTTTAGTAGTCGGA PEPE_1198 1198904 - 1199914 + | 3-carboxymuconate cyclase PEPE_1199 1199932 - 1200561 + | copper resistance protein TERM 1424 1200613 - 1200557 - T 100 -15.7 -3.67175 | gap 1, opp_overlap 1200570 1200607, overlap 1200558 1200570 ATGGTTCAAAATTAA TCTAAAACAAAAAGACATGCAATCAC TGTTAC GTGATC-CATGTCTTTTTGTTTTAGT AAAAGTTTGCTAAAC TERM 1425 1200612 - 1200558 - T 100 -19.2 -2.79823 | gap 1, opp_overlap 1200570 1200607, overlap 1200557 1200570 TGGTTCAAAATTAAT CTAAAACAAAAAGACATGCAATCAC TGTTAC GTGATC-CATGTCTTTTTGTTTTAG TAAAAGTTTGCTAAA TERM 1426 1200570 - 1200600 + T 76 -3.4 -5.50723 | gap 1, opp_overlap 1200570 1200558 1200557 AATCTAAAACAAAAA GACATGCAATCAC TGTTAC GTGATC-CATGTC TTTTTGTTTTAGTAA TERM 1427 1200600 - 1200570 - T 84 -5.6 -5.49568 | gap 1, opp_overlap 1200570, overlap 1200558 1200557 AATCTAAAACAAAAA GACATGCAATCAC TGTTAC GTGATC-CATGTC TTTTTGTTTTAGTAA PEPE_1200 1201958 - 1200609 - | transcriptional regulator PEPE_1201 1202712 - 1201951 - | pseudouridylate synthase, 23S RNA-specific TERM 1428 1202016 - 1202027 + g 70 -3 -5.08824 | CTGGAATAGACGTTT TGAT ATCG ATCA TTTTTTCCGTAAAAA TERM 1429 1202188 - 1202209 + g 83 -7.5 -4.61231 | opp_overlap 1202187 ACGACCAGAATGTAG TTTTACTTT CAGC AAAGTAAAA TTTTTGAAGGTATCC TERM 1430 1202491 - 1202467 - G 70 -8.6 -3.06183 | TGTATCCTGATCTAA CCGAGTTACC ACATG GACAACTCGG CTCTCATAATTATTT TERM 1431 1202879 - 1202857 - R 73 -7.8 -3.67564 | AACTATCCATCTAAA CTTCATCGAT ACT ACCAATGAAG GAATTTCGAACTCGA ppnK 1203661 - 1202852 - | inorganic polyphosphate/ATP-NAD kinase PEPE_1203 1204278 - 1203664 - | RelA_SpoT domain-containing protein PEPE_1204 1204446 - 1205042 + | dithiol-disulfide isomerase PEPE_1205 1206089 - 1205064 - | competence protein TERM 1432 1205147 - 1205166 + g 71 -3.6 -4.96848 | opp_overlap 1205142 1205140, overlap 1205165 TAAAATACCATTCGC CATCATTA CTGA TAACGATG TTTTTCTCTAAAAGC TERM 1433 1205920 - 1205930 + g 73 -6.8 -4.24413 | TTAGTTTCACCTTTT GGCT GAT AGCC TTGTTTCTTAGTAAA TERM 1434 1206144 - 1206163 + r 70 -6.5 -4.27617 | opp_overlap 1206144 TTCCCACGAAAAAAA CACAACA AATTAA TGTTGTG TTTTGGTAAAATCTA TERM 1435 1206163 - 1206144 - R 93 -6.5 -5.52384 | opp_overlap 1206144 TTCCCACGAAAAAAA CACAACA AATTAA TGTTGTG TTTTGGTAAAATCTA PEPE_1206 1206911 - 1206186 - | adaptor protein PEPE_1207 1207487 - 1207089 - | arsenate reductase TERM 1436 1207734 - 1207722 - R 75 -4.9 -5.10767 | opp_overlap 1207733 TATGGAATACAAAAA TCATA AGT TATGA AACTGTTTTCTAAAT PEPE_1208 1208481 - 1207744 - | beta-lactamase superfamily hydrolase PEPE_1209 1208591 - 1209076 + | monooxygenase PEPE_1210 1209132 - 1209350 + | hypothetical protein TERM 1437 1209529 - 1209510 - T 100 -7.2 -5.75599 | opp_overlap 1209510 TAAAGTACAAAAAAA GAGTTAGT TAAA ACTAACCC ATTATTATTAAAGGC TERM 1438 1209663 - 1209626 - T 100 -7.3 -5.58179 | gap 1 CATTATAATAAAAAA GTGTAATTACTCGCATAA AAA TTACACGAA-AATTACAC GAAATAGCTCGATAA TERM 1439 1210211 - 1210241 + T 73 -9 -2.82623 | opp_overlap 1210219, overlap 1210207 1210240 AAAAATTTTTGGAAT GGAGGATACAGG GCTCGAA CCTGTGACCTCC TGCTTGTAAGGCAGA TERM 1440 1213403 - 1213422 + T 95 -12.2 -3.66803 | opp_overlap 1213402 1213401 TTCAGTCCTACAACC CCAGGAAG CAAG CTTCCTGG TTTGGGCTCTTCCCG TERM 1441 1213701 - 1213717 + T 75 -9.5 -2.86185 | opp_overlap 1213700, overlap 1213698 CCTAACTTAACCTAT CTTTACC TAC GGTAAAG TGATTAATTGAGTTT TERM 1442 1213878 - 1213860 - T 89 -7.5 -5.00196 | TTTCAAAGAACAAAA TTGAGAG TAAAC CTCTCAA AACTAAACAAAACTT TERM 1443 1213941 - 1213960 + T 72 -9.2 -2.65808 | opp_overlap 1213932 1213929, overlap 1213938 1213938 AAAGGAGGTGATCCA GCCGCAGG TTCT CCTACGGC TACCTTGTTACGACT TERM 1444 1215290 - 1215273 - T 82 -8.5 -4.09864 | opp_overlap 1215273 AGCCATCTTTTAAAA GAAAACC ATGC GGTTTTC TTTGTTATACGGTAT TERM 1445 1215273 - 1215290 + T 87 -8.5 -4.32579 | opp_overlap 1215273 AGCCATCTTTTAAAA GAAAACC ATGC GGTTTTC TTTGTTATACGGTAT TERM 1446 1215824 - 1215840 + T 74 -6.7 -4.21792 | overlap 1215815 GTCAAGTAATTTTAT GAAATTA ATT TAATTTC TCTTTTTTCCATTGT PEPE_1224 1216202 - 1215828 - | RNA-binding protein PEPE_1225 1216315 - 1216959 + | hypothetical protein TERM 1447 1216968 - 1216950 - T 100 -10.3 -5.95286 | opp_overlap 1216950 ATCAAAAATAAAAAA GCAGGTC TAGTT GACCTGC TTTTTTACTACCCAA TERM 1448 1216950 - 1216968 + T 100 -10.3 -5.14563 | opp_overlap 1216950 ATCAAAAATAAAAAA GCAGGTC TAGTT GACCTGC TTTTTTACTACCCAA PEPE_1226 1217582 - 1216956 - | hypothetical protein PEPE_1227 1218349 - 1217573 - | HAD family sugar phosphatase PEPE_1228 1218886 - 1218350 - | hypothetical protein PEPE_1229 1219557 - 1218949 - | phosphoesterase or phosphohydrolase PEPE_1230 1220918 - 1219554 - | gamma-aminobutyrate permease related permease TERM 1449 1219885 - 1219868 - G 70 -6.3 -4.28375 | TCAAGATATTTAAAA TGACTGC TACT GCAATCA CTAGCGATGATAACA TERM 1450 1220982 - 1220957 - R 100 -9.2 -5.54079 | overlap 1220974 TCAAAAATTAAAAAA TCATTAGACT TTTAAT AGTCTAATGA TACATAAAACTTTTT PEPE_1231 1222014 - 1221010 - | adenine-specific DNA methylase PEPE_1232 1222346 - 1222032 - | hypothetical protein PEPE_1233 1222749 - 1222315 - | hypothetical protein TERM 1451 1222370 - 1222401 + gr 71 -3.2 -5.02074 | opp_overlap 1222378, overlap 1222378 CTCTTCTTTCCATTT GAAACTAATTTAAT TTGG ATTAAATTTCTTTC TTTTTTAAAAAATAC PEPE_1234 1222912 - 1222727 - | hypothetical protein PEPE_1235 1223252 - 1222893 - | hypothetical protein PEPE_1236 1223637 - 1223332 - | competence protein ComGC PEPE_1237 1224644 - 1223634 - | Type II secretory pathway/competence component PEPE_1238 1225584 - 1224622 - | Type II secretory pathway/competence component, ATPase TERM 1452 1225649 - 1225701 + r 100 -11.1 -4.66535 | gap 2, opp_overlap 1225651 1225664, overlap 1225664 TTAATTAGCTAAATT TAGAC--AACAAAAAAACATGAACC ATTCA GGTTCATGTTTTTTTGTTATGACTA TTTATTTTAGAACTT TERM 1453 1225697 - 1225651 - R 100 -16.3 -2.67016 | opp_overlap 1225649 1225664, overlap 1225664 AATTAGCTAAATTTA GACAACAAAAAAACATGAACC ATTCA GGTTCATGTTTTTTTGTTATG ACTATTTATTTTAGA TERM 1454 1225684 - 1225664 - R 100 -9.8 -5.9218 | opp_overlap 1225649 1225664, overlap 1225651 TAGACAACAAAAAAA CATGAACC ATTCA GGTTCATG TTTTTTTGTTATGAC TERM 1455 1225664 - 1225684 + r 100 -9.8 -5.88565 | opp_overlap 1225664 1225651, overlap 1225649 TAGACAACAAAAAAA CATGAACC ATTCA GGTTCATG TTTTTTTGTTATGAC PEPE_1239 1226614 - 1225703 - | ribokinase family sugar kinase TERM 1456 1226712 - 1226691 - R 100 -6.6 -5.99154 | opp_overlap 1226691 GATTAAATAAAAAAA GCAAGAAC TTAATT GTCCTTGC CTTTAATAATTATTA PEPE_1240 1227462 - 1226725 - | hypothetical protein PEPE_1241 1227963 - 1227565 - | hypothetical protein PEPE_1242 1228285 - 1227956 - | hypothetical protein PEPE_1243 1229567 - 1228278 - | nucleotidyltransferase/DNA polymerase for DNA repair TERM 1457 1228398 - 1228417 + g 72 -7.2 -4.00532 | ATATTCAGCTCTAAT CTGGTCAA CCAG TTGATCAG TTTGATGTTTGGAAA TERM 1458 1229659 - 1229625 - R 100 -7.4 -5.88565 | overlap 1229632 TTGACAAGAAAAAAA TAAAAAACGCTTCT TAAAAAT AGAAACGTTTCTTA TTAACGAGGGGGCGA TERM 1459 1229652 - 1229632 - R 91 -3.3 -6.12458 | overlap 1229625 GAAAAAAATAAAAAA CGCTTCT TAAAAAT AGAAACG TTTCTTATTAACGAG TERM 1460 1230004 - 1230031 + r 82 -8.6 -4.11484 | opp_overlap 1230004 AAGCCGATAAAAAAA GGATTAATAGTA TTCC TACTATCAATCC TTTTAGACAATTACG TERM 1461 1230031 - 1230004 - R 100 -10.8 -5.63504 | opp_overlap 1230004 AAGCCGATAAAAAAA GGATTAATAGTA TTCC TACTATCAATCC TTTTAGACAATTACG PEPE_1244 1230599 - 1230042 - | translation initiation factor 5A (eIF-5A) TERM 1462 1230782 - 1230828 + r 78 -9.6 -3.20307 | opp_overlap 1230788, overlap 1230780 1230786 TTTTTGACTACCACA TAAAAAGGAACCCCTGAAAAAA TAA TTTTCTCAGCGGTTCCCATTTA TATTAATCCTATTCA TERM 1463 1230822 - 1230788 - R 100 -15.2 -5.01497 | opp_overlap 1230786 1230782 1230780 ACTACCACATAAAAA GGAACCCCTGAAAAAA TAA TTTTCTCAGCGGTTCC CATTTATATTAATCC PEPE_1245 1231394 - 1230837 - | amidase PEPE_1246 1232721 - 1231423 - | adenylosuccinate lyase TERM 1464 1232664 - 1232684 + g 73 -2.5 -5.22039 | opp_overlap 1232665, overlap 1232665 CAAGCCAACTTTGAA ATTGGGACT GGC GGTTCCAAA TTTTTTGCATTTCGG PEPE_1247 1232902 - 1234197 + | adenylosuccinate synthetase TERM 1465 1234237 - 1234208 - T 100 -11.7 -6.11229 | opp_overlap 1234208 ACTAAAATAAAAAAA GAAGTAAAAATCA TTAA CGATTTTTACTTC TTTTTTTATTGACCT TERM 1466 1234208 - 1234237 + T 100 -11 -5.80364 | opp_overlap 1234208 ACTAAAATAAAAAAA GAAGTAAAAATC ATTAAC GATTTTTACTTC TTTTTTTATTGACCT PEPE_1248 1234964 - 1234221 - | hypothetical protein PEPE_1249 1235293 - 1236024 + | glycerol uptake facilitator related permease TERM 1467 1236085 - 1236029 - T 76 -9.8 -3.17146 | opp_overlap 1236044, overlap 1236044 TTTTCCTATAACATA TAATTAAACAAAAAATCCGCTTCTAC CTAAT GTAGAAGTGGATTTTTTCTTTTATTT AGTAGATTGTCTGAA TERM 1468 1236044 - 1236070 + T 100 -11.7 -5.95449 | opp_overlap 1236044 1236029 TAATTAAACAAAAAA TCCGCTTCTAC CTAAT GTAGAAGTGGA TTTTTTCTTTTATTT TERM 1469 1236070 - 1236044 - T 100 -9.5 -5.72053 | opp_overlap 1236044, overlap 1236029 TAATTAAACAAAAAA TCCGCTTCTAC CTAAT GTAGAAGTGGA TTTTTTCTTTTATTT PEPE_1250 1237084 - 1236080 - | LacI family transcription regulator TERM 1470 1236890 - 1236857 - G 73 -4.1 -5.12617 | gap 1, opp_overlap 1236881, overlap 1236859 1236881 TAACGATGCAAAAAA CATTTGAGTAATATCT GGT AGA-ATTACTCCAATA GTAGTTGATCTCTTG TERM 1471 1237923 - 1237935 + G 72 -7.7 -3.72742 | TTTTCGACTTAGGTA CCATC CAT GATGG TTATATTAGTGATGC PEPE_1251 1237247 - 1238341 + | Mername-AA019 peptidase TERM 1472 1238357 - 1238381 + T 100 -10.7 -4.9792 | opp_overlap 1238357 TATTTCTACCAAAAA GCACTTCGGTT CTA AGCCGAAGCGC TTTTTATATAGCCTA TERM 1473 1238381 - 1238357 - T 95 -10.7 -4.72986 | opp_overlap 1238357 TATTTCTACCAAAAA GCACTTCGGTT CTA AGCCGAAGCGC TTTTTATATAGCCTA PEPE_1252 1240146 - 1238398 - | pyruvate oxidase TERM 1474 1240272 - 1240304 + r 100 -6.4 -6.08342 | opp_overlap 1240272 TTTCAAAATAAAAAA GATGAAAACTAGCA ATAGC TACTAGTTTCCATC TTTTTTTATTTATTC TERM 1475 1240304 - 1240272 - R 100 -11.5 -5.79595 | opp_overlap 1240272 TTTCAAAATAAAAAA GATGAAAACTAGCAA TAG CTACTAGTTTCCATC TTTTTTTATTTATTC PEPE_1253 1240664 - 1240314 - | hypothetical protein PEPE_1254 1241090 - 1240677 - | methyl-accepting chemotaxis-like protein PEPE_1255 1241220 - 1242065 + | small-conductance mechanosensitive channel PEPE_1256 1242748 - 1242152 - | xanthosine triphosphate pyrophosphatase PEPE_1257 1243557 - 1242760 - | glutamate racemase TERM 1476 1243680 - 1243654 - R 100 -8.2 -5.63504 | opp_overlap 1243654 1243658 AACTCTATAAAAAAA GAAACCAATT ATTGATA AATTGGTTTC TACTTAACCTCAATT PEPE_1258 1244010 - 1243699 - | Thiol-disulfide isomerase and thioredoxin PEPE_1259 1246455 - 1244098 - | MutS family ATPase TERM 1477 1244449 - 1244466 + g 76 -4.1 -5.27923 | CATTTTCATAATTCC CATTTGG ACTT CCCAATG TTTTTTATCAACTTG TERM 1478 1246498 - 1246485 - R 76 -5.2 -4.99134 | ATTTCAAATCAAAAA CGGC CCGCTC GCCG ATAGATAATATCTCA PEPE_1260 1246829 - 1246542 - | hypothetical protein PEPE_1261 1247280 - 1246840 - | Holliday junction resolvase-like protein PEPE_1262 1247561 - 1247280 - | hypothetical protein PEPE_1263 1250299 - 1247654 - | alanyl-tRNA synthetase TERM 1479 1248990 - 1249006 + g 70 -5 -4.56187 | overlap 1248996 GATTTTTCTGTTGAT CGAGCC GAACG GGCACG TTCTTTTTGCTTCTG TERM 1480 1248996 - 1249009 + g 81 -6.7 -4.93968 | overlap 1248990 TCTGTTGATCGAGCC GAACG GGCA CGTTC TTTTTGCTTCTGCAT TERM 1481 1249852 - 1249884 + g 84 -4.2 -5.57054 | opp_overlap 1249852 CTTCCACTTTCACAA TATGGCTAGGATCA ATTGG TGTTTCTAACCATA TTTTTTTAGCTTCTT TERM 1482 1250359 - 1250348 - R 72 -7.2 -3.93953 | GTAAAATAATAAAGA CGCG ACTG CGCG GTACCACTTTACTTG PEPE_1264 1251935 - 1250574 - | superfamily II DNA/RNA helicase PEPE_1265 1252885 - 1251950 - | phosphoesterase, DHH family protein PEPE_1266 1254095 - 1252971 - | nucleotidyltransferase/DNA polymerase for DNA repair PEPE_1267 1255585 - 1254098 - | glucose-6-phosphate 1-dehydrogenase TERM 1483 1255683 - 1255659 - R 100 -5.8 -6.25741 | gap 1, opp_overlap 1255659, overlap 1255662 AAACAAGAAAAAAAA GACCCACGAAT TAAA ATTCGCGG-TC TAAGTTTGAAAAATT TERM 1484 1255681 - 1255662 - R 76 -8.6 -3.39221 | opp_overlap 1255659, overlap 1255659 CAAGAAAAAAAAGAC CCACGAAT TAAA ATTCGCGG TCTAAGTTTGAAAAA PEPE_1268 1256071 - 1255697 - | protein translocase subunit yajC tgt 1257279 - 1256137 - | queuine tRNA-ribosyltransferase TERM 1485 1256175 - 1256185 + g 72 -5.4 -4.54047 | overlap 1256173 TATTATATCCGTATT CTTC AAA GAAG TTTTGTCTAAACTCA PEPE_1270 1258337 - 1257303 - | S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) ruvB 1259361 - 1258348 - | Holliday junction DNA helicase B PEPE_1272 1259958 - 1259371 - | Holliday junction DNA helicase subunit RuvA TERM 1486 1259410 - 1259429 + g 73 -6.4 -4.21631 | opp_overlap 1259408 1259406 1259410 TCCCGAACTAATATA CTGATCAG TTGT CCGATCAG TTTGTTCACTCAATT TERM 1487 1259429 - 1259410 - G 70 -8.6 -3.18366 | opp_overlap 1259410, overlap 1259408 1259406 TCCCGAACTAATATA CTGATCAG TTGT CCGATCAG TTTGTTCACTCAATT mutL 1261943 - 1260006 - | DNA mismatch repair protein PEPE_1274 1264576 - 1261955 - | DNA mismatch repair protein TERM 1488 1264685 - 1264664 - R 88 -3.7 -5.9218 | gap 1, overlap 1264667 1264668 CATATAACAAAAAAA GAGC-GGACC GCT AGTCCAACTC TCCTTTACTTAGCAT PEPE_1275 1266249 - 1264690 - | HD superfamily hydrolase TERM 1489 1265105 - 1265089 - G 74 -9.5 -3.05935 | ATACTTCTTAGCCAA CTCAACT CCA AGTTGAG CGTGCGAAGTATCAG TERM 1490 1266405 - 1266382 - R 100 -11.2 -5.19261 | opp_overlap 1266382 AAACCTATCAAAAAA GATTCAAGAA AAGT TTCTTGAATC TTTTAGTAGTATTTA TERM 1491 1266382 - 1266405 + r 100 -11.2 -4.37067 | opp_overlap 1266382 AAACCTATCAAAAAA GATTCAAGAA AAGT TTCTTGAATC TTTTAGTAGTATTTA PEPE_1276 1267476 - 1266418 - | RecA protein TERM 1492 1267410 - 1267420 + g 83 -4 -5.63857 | TTCGCATAATAGATC CTTT ACC AAAG TTTTTTTCAATTTTT TERM 1493 1267560 - 1267545 - R 77 -3.2 -5.61689 | opp_overlap 1267545, overlap 1267546 AAAATCAACAAAAAA GCGAAC AAAA GTTCGA ATGTTTTATTTAATA PEPE_1277 1268807 - 1267566 - | competence/damage-inducible protein cinA TERM 1494 1268025 - 1268045 + g 70 -8.3 -3.35679 | opp_overlap 1268025 1268024 ATTAACGACAAAATC GGTGAAAGA AAC TCTGTCACC TTCTGCATAAAAGAA TERM 1495 1268654 - 1268664 + g 95 -5.4 -5.69379 | AAGCGACTTCTAAGG CATC CAT GATG TTTTTTTCGTTATCT TERM 1496 1268907 - 1268873 - R 90 -5.8 -5.52384 | TTTGTATTAAAAAAA GGTCCATAACAAAATC ATA AATTTCGCTATAGTCC TTTATATTACTAGAA PEPE_1278 1269498 - 1268917 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PEPE_1279 1270380 - 1269511 - | Xre-like DNA-binding protein PEPE_1280 1271151 - 1270426 - | 3-oxoacyl-acyl carrier protein reductase PEPE_1281 1272440 - 1271148 - | Zn-dependent peptidase TERM 1497 1271271 - 1271245 - G 74 -9.6 -3.18571 | opp_overlap 1271245, overlap 1271243 1271239 TCGTCTAAAGAGATA TCTTGATAAAGC ATT GCTTCATCAAAA ATTGTCGTATTTCCA TERM 1498 1272419 - 1272405 - G 71 -6.4 -4.18164 | opp_overlap 1272405 AACGGTTGAAAATAA GCATTC ATT GAACGC TTGATATACTTTTTT PEPE_1282 1273699 - 1272446 - | Zn-dependent peptidase TERM 1499 1272807 - 1272817 + g 77 -6.8 -4.57341 | opp_overlap 1272806 GAACTAGCATAGTAG GCCA AGC TGGC TTTTTCGCGCACGTT TERM 1500 1273363 - 1273397 + g 78 -7.2 -4.36411 | opp_overlap 1273360 1273357 1273363 GTGGATGAACAATCA CTTCATTCAAAAAGCG AAT CGCATCTTGAATTAAG TTTTGGTGCTTAATA TERM 1501 1273397 - 1273363 - G 73 -9.4 -2.96249 | opp_overlap 1273363, overlap 1273360 1273357 GTGGATGAACAATCA CTTCATTCAAAAAGCG AAT CGCATCTTGAATTAAG TTTTGGTGCTTAATA TERM 1502 1273637 - 1273620 - G 71 -3.4 -5.0538 | GCGTATTTCAAAAAA TGTACG TCAATG CGCACA GTTTTAAATTTTTTA TERM 1503 1273682 - 1273668 - G 71 -6.4 -4.19735 | opp_overlap 1273668 CTTGGTAAAACTAAA GTCTGA ATC CCAGAC TGATTTTGAACATCC PEPE_1283 1275194 - 1273767 - | cardiolipin synthetase 2 TERM 1504 1275262 - 1275237 - R 95 -10.6 -4.7373 | opp_overlap 1275239 CCAGTGTATCAAAAA GACCGAAAAT AACTAA ATTTTCGGTC TTAAGGTTCAGATTA PEPE_1284 1276096 - 1275275 - | amino acid ABC transporter periplasmic protein PEPE_1285 1276732 - 1276097 - | ABC-type polar amino acid transport system, ATPase component PEPE_1286 1277397 - 1276747 - | ABC-type amino acid transport system, permease component TERM 1505 1277456 - 1277427 - R 100 -13.7 -5.80003 | opp_overlap 1277424 TCAATAAATAAAAAA TCCTCTTAGGCGT TAAA AAGCCTAAGAGGA CGAGTTAATCGTGGT TERM 1506 1277588 - 1277562 - R 100 -16 -5.626 | CAGTCCATAAAAAAA TCCTCTTAGGCC AAA AGCCTAAGAGGA CGAGTTCAATCGCGG PEPE_1287 1278399 - 1277854 - | rod shape-determining protein MreD TERM 1507 1278043 - 1278031 - G 72 -6.3 -4.50218 | overlap 1278042 AACGATGAAAAATAA GATGT TAT ACATC GCCATCGCAAACATA PEPE_1288 1279254 - 1278409 - | rod shape-determining protein MreC TERM 1508 1278981 - 1278991 + g 79 -4 -5.47821 | overlap 1278982 TTTTATTTTCGGCGT TGAT TGA ATCA TTTTTTTCAATCCCT TERM 1509 1279120 - 1279131 + g 74 -5.8 -4.65895 | opp_overlap 1279120 1279119 AACTGTACCAAAAAC GTCG TTAC CGAC TTTTTGAATAACAGG PEPE_1289 1280012 - 1279353 - | DNA repair protein PEPE_1290 1281329 - 1280055 - | folylpolyglutamate synthase TERM 1510 1280736 - 1280757 + g 70 -7.3 -3.72743 | overlap 1280732 1280737 CGCAGCCTGATCTTC AGTTCCAGT GATT ACTGGAACA TTAGTTTTAATAATG TERM 1511 1280737 - 1280756 + g 78 -10.8 -2.82923 | overlap 1280736 1280732 GCAGCCTGATCTTCA GTTCCAGT GATT ACTGGAAC ATTAGTTTTAATAAT TERM 1512 1281184 - 1281166 - G 71 -3.8 -5.00884 | overlap 1281167 ATTTTGGCCAAAAAA GCAATGGT CGA ACCTTTAC CATTGGTCCCTGCAA TERM 1513 1281389 - 1281355 - R 83 -5.9 -5.14563 | gap 1, opp_overlap 1281355 1281364 CCTTCTAGCAAAAAA GAACCGC-ATCAAAAA TCAC TTTTTGTTTGCAGTTC TTTAATGTTAATTTA valS 1284079 - 1281413 - | valyl-tRNA synthetase TERM 1514 1281526 - 1281547 + g 73 -4.6 -5.00616 | CTTCAGGAGCATTGC TTACAAAA CGTTCA TTTTGTAA TTTTTTAACCACACG TERM 1515 1284141 - 1284110 - R 93 -8.1 -5.27335 | gap 1, overlap 1284113 1284133 CTTTCCAAATAAAAA GCACCC-CGTCCTA ACTCA TAGGACGAAGATGC TTCGCGGTACCACCT TERM 1516 1284137 - 1284113 - R 76 -8.6 -3.45131 | overlap 1284110 1284133 TCCAAATAAAAAGCA CCCCGTCCTA ACTCA TAGGACGAAG ATGCTTCGCGGTACC TERM 1517 1284208 - 1284194 - R 76 -8.6 -3.42503 | opp_overlap 1284193 1284194 CTTTAACATTGATAA CGAACA ATT TGTTCG ATTTTCTAGAATTAA TERM 1518 1284194 - 1284208 + r 74 -8.6 -3.25191 | opp_overlap 1284194, overlap 1284193 CTTTAACATTGATAA CGAACA ATT TGTTCG ATTTTCTAGAATTAA PEPE_1292 1284870 - 1284379 - | thiol peroxidase (atypical 2-Cys peroxiredoxin) TERM 1519 1284808 - 1284826 + g 71 -8.2 -3.54459 | opp_overlap 1284819, overlap 1284797 AAATTTGGGTAATTG TTCTCCAA TCA TTGGAGGA TTTCCAACGAGTTCA PEPE_1293 1286164 - 1284947 - | thiamine biosynthesis ATP pyrophosphatase PEPE_1294 1287327 - 1286173 - | cysteine sulfinate desulfinase/cysteine desulfurase TERM 1520 1287463 - 1287427 - R 95 -12.5 -3.5944 | opp_overlap 1287428 1287433, overlap 1287428 1287433 ATTTAGATCTTCAAA GTAAAATGCCATCGCAC TAA GTACGATAGCATTTTAT TTTCTAATATTCAGT TERM 1521 1287428 - 1287462 + r 100 -11.6 -4.55023 | opp_overlap 1287427 1287428 1287433, overlap 1287433 TTTAGATCTTCAAAG TAAAATGCCATCGCAC TAA GTACGATAGCATTTTA TTTTCTAATATTCAG TERM 1522 1287462 - 1287428 - R 100 -16 -2.75343 | opp_overlap 1287428 1287433, overlap 1287427 1287433 TTTAGATCTTCAAAG TAAAATGCCATCGCAC TAA GTACGATAGCATTTTA TTTTCTAATATTCAG TERM 1523 1287433 - 1287457 + r 91 -7.1 -5.20781 | opp_overlap 1287428 1287427 1287433, overlap 1287428 ATCTTCAAAGTAAAA TGCCATCGCAC TAA GTACGATAGCA TTTTATTTTCTAATA TERM 1524 1287457 - 1287433 - R 100 -11.5 -4.55128 | opp_overlap 1287433 1287428, overlap 1287428 1287427 ATCTTCAAAGTAAAA TGCCATCGCAC TAA GTACGATAGCA TTTTATTTTCTAATA PEPE_1295 1289176 - 1287467 - | septation ring formation regulator EzrA TERM 1525 1289722 - 1289734 + G 70 -6.3 -4.26076 | TAGACATTGACTCAC CGATT CTC AATCG TTTTAGTGAAGATGA PEPE_1296 1289340 - 1289825 + | GAF domain-containing protein rpsD 1290008 - 1290616 + | 30S ribosomal protein S4 TERM 1526 1290629 - 1290640 + F 100 -7.2 -6.01187 | opp_overlap 1290629 TAATCATATTAAAAA CGGC CTTG GCCG TTTTTTTATTTACTT TERM 1527 1290640 - 1290629 - f 86 -7.2 -4.84274 | opp_overlap 1290629 TAATCATATTAAAAA CGGC CTTG GCCG TTTTTTTATTTACTT TERM 1528 1290649 - 1290659 + F 72 -2.6 -5.45802 | TTGGCCGTTTTTTTA TTTA CTT TAAA TTTTTATTTTAGGAG TERM 1529 1291700 - 1291669 - g 72 -8.8 -3.27525 | overlap 1291664 1291673 CTCTCCTAAATCCAA TTCAGGCATTAGCG CAAT CGATAATGCCTTAA CCGATGTACGTACTG TERM 1530 1291696 - 1291673 - g 71 -9.6 -2.58812 | overlap 1291669 1291664 CCTAAATCCAATTCA GGCATTAGCG CAAT CGATAATGCC TTAACCGATGTACGT PEPE_1298 1290680 - 1291957 + | recombination factor protein RarA TERM 1531 1292176 - 1292191 + F 100 -10.4 -5.80248 | ACTAAAAGTTCTTTG CCCCAC TCCG GTGGGG TTTTTTTATATATTA PEPE_1299 1292225 - 1292503 + | hypothetical protein PEPE_1300 1292570 - 1293025 + | universal stress protein UspA-like nucleotide-binding protein TERM 1532 1293077 - 1293032 - T 76 -3.5 -5.44198 | opp_overlap 1293036, overlap 1293036 AATAAATAATAAAAA TAAAGTACAGTAATTTAGTTT AAAA AAATTAAATCGCCGTACTTTT TATTTACGCCATTTT TERM 1533 1293036 - 1293073 + T 77 -4.3 -5.27335 | opp_overlap 1293032 1293036 AATAATAAAAATAAA GTACAGTAATTTAGTTT AAAA AAATTAAATCGCCGTAC TTTTTATTTACGCCA TERM 1534 1293073 - 1293036 - T 73 -4.3 -5.11254 | opp_overlap 1293036, overlap 1293032 AATAATAAAAATAAA GTACAGTAATTTAGTTT AAAA AAATTAAATCGCCGTAC TTTTTATTTACGCCA PEPE_1301 1293642 - 1293091 - | DNA-3-methyladenine glycosylase I TERM 1535 1293638 - 1293693 + g 80 -2.7 -5.65513 | opp_overlap 1293649, overlap 1293642 1293644 1293649 CACGTACATTTTAAT TTCATAAAAAATCCCTCCTTAGGGT TTAATT ACTCTAAAGAGGGATTTTAAATTTA TTTTTTTAATTCATC TERM 1536 1293642 - 1293689 + r 91 -7.9 -5.25976 | opp_overlap 1293649, overlap 1293638 1293644 1293649 TACATTTTAATTTCA TAAAAAATCCCTCCTTAGGGT TTAATT ACTCTAAAGAGGGATTTTAAA TTTATTTTTTTAATT TERM 1537 1293644 - 1293687 + r 81 -10.5 -2.80715 | opp_overlap 1293649, overlap 1293642 1293638 1293649 CATTTTAATTTCATA AAAAATCCCTCCTTAGGGT TTAATT ACTCTAAAGAGGGATTTTA AATTTATTTTTTTAA TERM 1538 1293649 - 1293682 + r 95 -10.4 -4.46617 | opp_overlap 1293649, overlap 1293644 1293642 1293638 TAATTTCATAAAAAA TCCCTCCTTAGGGT TTAATT ACTCTAAAGAGGGA TTTTAAATTTATTTT TERM 1539 1293682 - 1293649 - R 100 -10.4 -5.27923 | opp_overlap 1293649 1293644 1293642 1293638 TAATTTCATAAAAAA TCCCTCCTTAGGGT TTAATT ACTCTAAAGAGGGA TTTTAAATTTATTTT PEPE_1302 1294746 - 1293691 - | D-alanine--D-alanine ligase TERM 1540 1294284 - 1294304 + g 79 -9.9 -3.42437 | overlap 1294287 CAAATTGGGCTGTTT TAATGTTGT TAT ACAACATTA TCTCTTTTGAAATTG TERM 1541 1294287 - 1294301 + g 70 -7.2 -3.83378 | overlap 1294284 ATTGGGCTGTTTTAA TGTTGT TAT ACAACA TTATCTCTTTTGAAA PEPE_1303 1295841 - 1294867 - | hypothetical protein TERM 1542 1295549 - 1295538 - G 71 -4.4 -4.84363 | overlap 1295540 GTAAATCACCAAAAA GAGT GAAA ACTC CACCATCACGGATTT PEPE_1304 1296010 - 1297431 + | amino acid transporter TERM 1543 1297436 - 1297472 + T 100 -18.3 -4.91109 | opp_overlap 1297436 CTACAGATTAAAAAA CGCATCTAAACTTAGCT TTT AACTAAGTTTAGATGCG TTTTTGTCATCCAAA TERM 1544 1297472 - 1297436 - T 100 -20.5 -5.24989 | opp_overlap 1297436 CTACAGATTAAAAAA CGCATCTAAACTTAGCT TTT AACTAAGTTTAGATGCG TTTTTGTCATCCAAA PEPE_1305 1298234 - 1297479 - | integral membrane protein PEPE_1306 1299030 - 1298242 - | ABC transporter, permease protein PEPE_1307 1299889 - 1299023 - | ABC-type multidrug transport system, ATPase component TERM 1545 1299610 - 1299623 + g 72 -5.3 -4.62069 | opp_overlap 1299610 TCCACTTGAAAACAT CCTTA ACTT TAAGG TTTTTAGGATAAAGA TERM 1546 1299749 - 1299694 - G 72 -7.8 -3.75738 | gap 1, opp_overlap 1299707 1299737 1299738, overlap 1299707 CATTATCACGAATAA CTTTATTATCTAACCGAATTTCTCCCG TAT CCGGAGCAATTCGGTTTACTAAT-AAG CTTAGTAAAGTACTT TERM 1547 1299737 - 1299707 - G 91 -12.6 -3.10012 | opp_overlap 1299707, overlap 1299694 AACTTTATTATCTAA CCGAATTTCTCCCG TAT CCGGAGCAATTCGG TTTACTAATAAGCTT TERM 1548 1299707 - 1299737 + g 95 -12.6 -3.79519 | opp_overlap 1299694 1299707 AACTTTATTATCTAA CCGAATTTCTCCCG TAT CCGGAGCAATTCGG TTTACTAATAAGCTT PEPE_1308 1300257 - 1299886 - | GntR family transcriptional regulator TERM 1549 1300356 - 1300342 - R 80 -7.2 -4.58395 | opp_overlap 1300341 1300342 GTTATCGTGCAAAAA GTCAAT TAA ATTGAC ATGTTTAACCCCGTC TERM 1550 1300414 - 1300386 - R 100 -12 -5.5353 | opp_overlap 1300386 CAGACCAACAAAAAA TCTGTAATAACA TTCAG TGTTATTACAGA TTTTAGAAGTTATTC TERM 1551 1300386 - 1300414 + r 100 -12.7 -4.16921 | opp_overlap 1300386 CAGACCAACAAAAAA TCTGTAATAACAT TCA GTGTTATTACAGA TTTTAGAAGTTATTC PEPE_1309 1301239 - 1300424 - | ABC-type metal ion transport system, periplasmic component/surface antigen PEPE_1310 1301940 - 1301257 - | ABC-type metal ion transport system, permease component TERM 1552 1301333 - 1301323 - G 70 -2.6 -5.11254 | AAGAACAAAAACAAA TAAT ACA ATTA GAATCGTTGCCACCA PEPE_1311 1302967 - 1301930 - | ABC-type metal ion transport system, ATPase component TERM 1553 1302701 - 1302717 + g 83 -8.1 -4.42788 | opp_overlap 1302700 1302701 TAATAAATTAAAATG TTGGAAT ATC ATTCCAA TTTTATGGCGTTGGA TERM 1554 1303036 - 1302995 - R 100 -11.2 -5.95539 | gap 2, opp_overlap 1302995 1303009 TTTTAAACAAAAAAA CTTTCG-CCC-GAATATAGC TAAA GCTATATTCAAGGACGAAAG TCTGTCGTGTTACCA TERM 1555 1302995 - 1303036 + r 74 -9 -3.00923 | gap 2, opp_overlap 1302995, overlap 1303009 TTTTAAACAAAAAAA CTTTCG-CC-CGAATATAGC TAAA GCTATATTCAAGGACGAAAG TCTGTCGTGTTACCA TERM 1556 1303335 - 1303323 - R 95 -4.1 -6.11229 | opp_overlap 1303323 1303324, overlap 1303324 1303327 ACTAAAATAAAAAAA CTAGG ATA CCTAA TTTGTATCACTAGTT PEPE_1312 1304567 - 1303353 - | cell division membrane protein PEPE_1313 1304804 - 1304583 - | hypothetical protein PEPE_1314 1305070 - 1304813 - | hypothetical protein PEPE_1315 1305309 - 1305085 - | hypothetical protein TERM 1557 1305413 - 1305380 - R 100 -14.1 -3.36991 | opp_overlap 1305389, overlap 1305389 TATCATTTTTAAACA CAAAAAAAACGCTCA AAAT TGAGCGTTTTTTATG ACCAATAACTAAATT TERM 1558 1305389 - 1305404 + r 95 -9 -5.24531 | opp_overlap 1305389 1305380 TAAACACAAAAAAAA CGCTCA AAAT TGAGCG TTTTTTATGACCAAT TERM 1559 1305404 - 1305389 - R 100 -9 -6.15717 | opp_overlap 1305389, overlap 1305380 TAAACACAAAAAAAA CGCTCA AAAT TGAGCG TTTTTTATGACCAAT PEPE_1316 1305846 - 1305427 - | F0F1 ATP synthase subunit epsilon PEPE_1317 1307267 - 1305858 - | F0F1 ATP synthase subunit beta TERM 1560 1306609 - 1306626 + g 71 -8.4 -3.52472 | opp_overlap 1306601 AGAGCAACTCGCATA CGAGCC CCAGGC GGCTCG TTCATTTGACCATAT PEPE_1318 1308212 - 1307292 - | F0F1 ATP synthase subunit gamma PEPE_1319 1309767 - 1308250 - | F0F1 ATP synthase subunit alpha PEPE_1320 1310339 - 1309797 - | F0F1 ATP synthase subunit delta PEPE_1321 1310857 - 1310336 - | F0F1-type ATP synthase, subunit b PEPE_1322 1311114 - 1310902 - | F0F1 ATP synthase subunit C PEPE_1323 1311863 - 1311147 - | F0F1-type ATP synthase, subunit a TERM 1561 1312132 - 1312096 - R 100 -13.4 -5.10154 | opp_overlap 1312096 1312099 ACTTAAAATCAAAAA GAATTTCAGAAATAAA ATTTA TTTATCTCTGAAATTC TTAACTATTCATTTG TERM 1562 1312096 - 1312132 + r 85 -11.2 -3.22877 | opp_overlap 1312096, overlap 1312099 ACTTAAAATCAAAAA GAATTTCAGAAATAAA ATTTA TTTATCTCTGAAATTC TTAACTATTCATTTG TERM 1563 1312099 - 1312129 + r 70 -7.1 -3.73872 | opp_overlap 1312096, overlap 1312096 TAAAATCAAAAAGAA TTTCAGAAATAAA ATTTA TTTATCTCTGAAA TTCTTAACTATTCAT PEPE_1324 1314749 - 1312137 - | peptide ABC transporter permease TERM 1564 1312974 - 1312988 + g 74 -10 -2.69596 | opp_overlap 1312972, overlap 1312973 1312976 CATATTGATATCATC CACGGT TTT ACCGTG CTTAGTTGCTTTAAA TERM 1565 1313060 - 1313084 + g 80 -5.8 -5.15969 | gap 1 CCCTAGCAATTGTCT GCCGAACCGAT TCTA ATTGGTT-GGC TTTTTTAGCTTGAAC TERM 1566 1314713 - 1314686 - G 90 -11.5 -3.97511 | CACCTAACATAATAA TTAGGACGATT GCGGTA AATCGTCCTAA CGATCCCCTAATATC PEPE_1325 1315460 - 1314759 - | peptide ABC transporter ATPase TERM 1567 1315538 - 1315554 + r 100 -12.3 -4.6526 | opp_overlap 1315538, overlap 1315528 TAACATACAAAAAAA GAAGGCC AAT GGCCTTC TTTTTAAAGATTTAT TERM 1568 1315554 - 1315538 - R 100 -12.3 -5.80248 | opp_overlap 1315538 1315528 TAACATACAAAAAAA GAAGGCC AAT GGCCTTC TTTTTAAAGATTTAT upp 1316195 - 1315566 - | uracil phosphoribosyltransferase PEPE_1327 1317497 - 1316265 - | serine hydroxymethyltransferase TERM 1569 1317047 - 1317029 - G 71 -8.2 -3.51232 | opp_overlap 1317028 1317031 GTTCTTTTAAAGCAA TACGACGA ATT TCATCGTA ATCTAATTTTTCAGT TERM 1570 1317204 - 1317189 - G 79 -8.2 -4.16842 | overlap 1317190 CCCAGGTTTAATAAA CGCGGC ATAA GCCGCA GCATTCGCTTGGGAA TERM 1571 1317203 - 1317190 - G 74 -9.5 -3.09784 | overlap 1317189 CCAGGTTTAATAAAC GCGGC ATAA GCCGC AGCATTCGCTTGGGA PEPE_1328 1318533 - 1317511 - | translation factor SUA5 PEPE_1329 1319394 - 1318543 - | methylase of polypeptide chain release factor TERM 1572 1319370 - 1319351 - G 88 -9.3 -4.55295 | TTTCGGATAAACAAA GAAGCCC ATCTCA GGGCTTC AAAATAAGTTGGAAT prfA 1320466 - 1319387 - | peptide chain release factor 1 PEPE_1331 1321064 - 1320471 - | thymidine kinase TERM 1573 1321388 - 1321410 + G 72 -9.2 -2.76261 | opp_overlap 1321391, overlap 1321387 1321390 CGTAATCACTGGTAC CAATGGTAAG ACC CTTACCACTG CTTTAACCGTTAAAG TERM 1574 1321407 - 1321391 - g 74 -9.5 -3.16039 | opp_overlap 1321390 1321388 1321387 AATCACTGGTACCAA TGGTAAG ACC CTTACCA CTGCTTTAACCGTTA TERM 1575 1322112 - 1322124 + G 74 -6.2 -4.56597 | opp_overlap 1322111 AAGGCTTTAAATGAC CCCG ATGAG CGGG TTTTTGGACGACAAG PEPE_1332 1321218 - 1322564 + | UDP-N-acetylmuramyl tripeptide synthase PEPE_1333 1322566 - 1323270 + | glutamine amidotransferase TERM 1576 1323280 - 1323313 + T 100 -14.9 -5.37345 | opp_overlap 1323280 TTCTAAGACTAAAAA GAGTATCTAAGAAAG AATT TTTTCTTAGATACTC TTTTTTATGCTTCAC TERM 1577 1323313 - 1323280 - T 100 -14.2 -4.87626 | opp_overlap 1323280 TTCTAAGACTAAAAA GAGTATCTAAGAAA GAATTT TTTCTTAGATACTC TTTTTTATGCTTCAC PEPE_1334 1324286 - 1323318 - | phosphomannose isomerase PEPE_1335 1325358 - 1324360 - | Beta-lactamase class C related penicillin binding protein TERM 1578 1325451 - 1325412 - R 100 -17.5 -5.60689 | TTATATAACAAAAAA TGGGTTATTCTCCGTTT TGTTTC AAACGAAGAATAACCCA TTAAAAATTAAATTA PEPE_1336 1327339 - 1325459 - | ABC-type multidrug transport system, ATPase and permease component PEPE_1337 1329071 - 1327332 - | ABC-type multidrug transport system, ATPase and permease component PEPE_1338 1329724 - 1329074 - | transcriptional regulator TERM 1579 1329753 - 1329741 - H 76 -6.3 -4.58395 | TCGACCTCCTAAAAA TGACA ACT TGTCA TAAACCACAATTATA PEPE_1339 1329847 - 1330188 + | hypothetical protein greA 1330203 - 1330667 + | transcription elongation factor GreA TERM 1580 1330878 - 1330917 + T 100 -13.9 -2.90617 | opp_overlap 1330883, overlap 1330883 ATGGCCAATCAACCT AAAAAGAGTCATGTAGT TTTCAC ACTACATGACTCTTTTG CTTTCCATTTAACAT TERM 1581 1330883 - 1330912 + T 100 -13.8 -4.59424 | opp_overlap 1330883, overlap 1330878 CAATCAACCTAAAAA GAGTCATGTAGT TTTCAC ACTACATGACTC TTTTGCTTTCCATTT TERM 1582 1330912 - 1330883 - T 100 -13.8 -4.77896 | opp_overlap 1330883 1330878 CAATCAACCTAAAAA GAGTCATGTAGT TTTCAC ACTACATGACTC TTTTGCTTTCCATTT PEPE_1343 1330977 - 1330897 - | hypothetical protein TERM 1583 1330926 - 1330940 + g 72 -5.8 -4.3739 | TCTTTTGCTTTCCAT TTAACA TTT TGTTAA TTTTATCCCCCACTA PEPE_1344 1331252 - 1330956 - | rhodanese-related sulfurtransferase PEPE_1345 1332221 - 1331400 - | membrane protease family stomatin/prohibitin-like protein PEPE_1346 1332563 - 1332234 - | hypothetical protein TERM 1584 1332675 - 1332652 - R 100 -6.8 -5.7946 | opp_overlap 1332652 1332647 CTGTCAATAAAAAAA TGATCCCTTA TTAT CAAGGAATCA TTTTATATAATCATT TERM 1585 1332706 - 1332728 + r 79 -10.6 -2.56177 | overlap 1332705 1332709 1332712 TAAACTTCTGAAGCC CCCGAAGTAG CAT CTACTTCTGG ATTGCTCTCGAGTGT TERM 1586 1332709 - 1332725 + r 74 -9.5 -2.58714 | overlap 1332706 1332705 1332712 ACTTCTGAAGCCCCC GAAGTAG CAT CTACTTC TGGATTGCTCTCGAG PEPE_1347 1333994 - 1332690 - | flavoprotein PEPE_1348 1334623 - 1333991 - | flavoprotein PEPE_1349 1335598 - 1334657 - | thiamine biosynthesis membrane-associated lipoprotein TERM 1587 1335697 - 1335716 + r 87 -10.8 -3.3854 | opp_overlap 1335697 TTTTCAATAAAAAAA GCTATCAC AAAT GTGATAGC TTCTGAGTAGTACTT TERM 1588 1335716 - 1335697 - R 100 -10.8 -5.7946 | opp_overlap 1335697 TTTTCAATAAAAAAA GCTATCAC AAAT GTGATAGC TTCTGAGTAGTACTT pgi 1337088 - 1335739 - | glucose-6-phosphate isomerase TERM 1589 1337355 - 1337321 - R 75 -2.8 -5.66989 | TAAATACGAAAAAAA TCGCTCCCCAGGTCAC CTA ACAACCTCGAAAACGA TTTTTCCTACTATAG PEPE_1351 1338258 - 1337389 - | putative glucose uptake permease TERM 1590 1338157 - 1338139 - G 71 -3.8 -4.9448 | AGTGATTAAAGAAAA GACAACCG CAC CCATTGTC ATTCCAAGCGTTTGT PEPE_1352 1338606 - 1339469 + | fructose-bisphosphate aldolase TERM 1591 1339487 - 1339506 + T 100 -10 -5.85737 | opp_overlap 1339487 TGATCCATGAAAAAA GCTTGGCT TAAT GGCCAAGC TTTTTTTGTTGCTCT TERM 1592 1339506 - 1339487 - T 95 -9.3 -5.1675 | opp_overlap 1339487 TGATCCATGAAAAAA GCTTGGC TTAATG GCCAAGC TTTTTTTGTTGCTCT PEPE_1353 1340942 - 1339494 - | Signal transduction histidine kinase PEPE_1354 1341670 - 1340948 - | DNA-binding response regulator TERM 1593 1341787 - 1341743 - R 100 -13.2 -3.4214 | opp_overlap 1341746 1341751, overlap 1341751 AATGTGAATATAATA TCAAAAAAGAGAGACAAACT TAATT AGTTTGTCCCTCTTTTATAA ATTTTAGAATTTAAT TERM 1594 1341746 - 1341784 + r 80 -10.5 -2.76693 | opp_overlap 1341743 1341751, overlap 1341751 GTGAATATAATATCA AAAAAGAGAGACAAACT TAATT AGTTTGTCCCTCTTTTA TAAATTTTAGAATTT TERM 1595 1341779 - 1341751 - R 100 -12.6 -5.30189 | opp_overlap 1341746 1341751, overlap 1341743 TATAATATCAAAAAA GAGAGACAAACT TAATT AGTTTGTCCCTC TTTTATAAATTTTAG TERM 1596 1341751 - 1341779 + r 95 -10.4 -4.54477 | opp_overlap 1341751 1341743, overlap 1341746 TATAATATCAAAAAA GAGAGACAAACT TAATT AGTTTGTCCCTC TTTTATAAATTTTAG PEPE_1355 1342489 - 1341812 - | aggregation promoting factor-like surface protein TERM 1597 1342775 - 1342752 - R 100 -9.6 -5.7946 | opp_overlap 1342756 TTTTTAATAAAAAAA CAGGGGAAAG AAAA CTTTCCTCTG TCACAAAAGTGTCTA PEPE_1356 1343495 - 1342809 - | hypothetical protein TERM 1598 1343273 - 1343289 + g 71 -3.7 -4.94672 | overlap 1343275 1343279 CTAACTTTTGTCCTA CATTGAT AAC ATCAACG TTTTTAATGTTATTT PEPE_1357 1344301 - 1343804 - | sortase related acyltransferase TERM 1599 1344419 - 1344431 + H 73 -7.7 -3.65046 | GCATATTTTTTGAAT CCGTT TTC AACGG TTGTTAGACTGAAGG PEPE_1358 1344470 - 1345618 + | hypothetical protein TERM 1600 1345629 - 1345653 + T 100 -8.7 -5.64304 | opp_overlap 1345629 TCTAAATCAAAAAAA GAATTTTCCTT TGG ATGGAAAATTC TTTTTTATTGTCTTA TERM 1601 1345653 - 1345629 - T 100 -8.7 -5.72207 | opp_overlap 1345629 TCTAAATCAAAAAAA GAATTTTCCTT TGG ATGGAAAATTC TTTTTTATTGTCTTA PEPE_1359 1346043 - 1345666 - | hypothetical protein PEPE_1360 1347461 - 1346109 - | H+/gluconate symporter related permease PEPE_1361 1349095 - 1347533 - | gluconate kinase PEPE_1362 1350009 - 1349110 - | 6-phosphogluconate dehydrogenase-like protein PEPE_1363 1350158 - 1350991 + | transcriptional regulator TERM 1602 1351257 - 1351223 - T 77 -4.4 -5.17576 | overlap 1351226 GATCAACGCAAAAAA TAAGTTTAGAACAACA ATT TTTTGTACTAAACATA AAAAAGCTCCAAGAA TERM 1603 1351254 - 1351226 - T 76 -6.1 -4.67173 | overlap 1351223 CAACGCAAAAAATAA GTTTAGAACAACA ATT TTTTGTACTAAAC ATAAAAAAGCTCCAA TERM 1604 1351258 - 1351304 + T 100 -16.2 -2.75997 | opp_overlap 1351263, overlap 1351263 TTTGTACTAAACATA AAAAAGCTCCAAGAAACTGAAT TGC ATCTAGTTTCTTGGAGCTTTTA GTTACTTTATCGCCA TERM 1605 1351299 - 1351263 - T 100 -16.1 -5.5762 | opp_overlap 1351258 1351263 ACTAAACATAAAAAA GCTCCAAGAAACTGAAT TGC ATCTAGTTTCTTGGAGC TTTTAGTTACTTTAT TERM 1606 1351263 - 1351299 + T 100 -16.1 -4.53774 | opp_overlap 1351263, overlap 1351258 ACTAAACATAAAAAA GCTCCAAGAAACTGAAT TGC ATCTAGTTTCTTGGAGC TTTTAGTTACTTTAT PEPE_1365 1352929 - 1352042 - | restriction endonuclease TERM 1607 1353038 - 1353007 - R 100 -14 -5.4756 | opp_overlap 1353007 1353009 AATTTTAATAAAAAA GCGTACTACTTATT TTCG AATAAGTAGTACAC TTTTTAATCAACGAA TERM 1608 1353007 - 1353038 + r 100 -11.8 -4.72272 | opp_overlap 1353007, overlap 1353009 AATTTTAATAAAAAA GCGTACTACTTATT TTCG AATAAGTAGTACAC TTTTTAATCAACGAA TERM 1609 1353009 - 1353036 + r 95 -13 -2.65504 | opp_overlap 1353007, overlap 1353007 TTTTAATAAAAAAGC GTACTACTTATT TTCG AATAAGTAGTAC ACTTTTTAATCAACG PEPE_1366 1354440 - 1353073 - | tRNA (uracil-5-)-methyltransferase related enzyme TERM 1610 1353534 - 1353558 + g 71 -4.4 -4.81851 | CTCCAGTTAATCCAG CTTTATCGAT AGCAA GTTGATAAAG TTTTTCAGTTTGGAT TERM 1611 1354466 - 1354501 + r 78 -9.1 -3.48668 | opp_overlap 1354471, overlap 1354471 TATCTATTTACTGAT AAAAACAGGCTGGCA CATTAA TACCAGCCTGTTTTA TTCTCGTGTGCTACT TERM 1612 1354496 - 1354471 - R 100 -11.9 -4.88067 | opp_overlap 1354466 1354471 ATTTACTGATAAAAA CAGGCTGGCAC ATTA ATACCAGCCTG TTTTATTCTCGTGTG TERM 1613 1354471 - 1354496 + r 93 -9 -4.82819 | opp_overlap 1354471, overlap 1354466 ATTTACTGATAAAAA CAGGCTGGCA CATTAA TACCAGCCTG TTTTATTCTCGTGTG PEPE_1367 1355560 - 1354559 - | putative lipid kinase gatB 1357015 - 1355588 - | aspartyl/glutamyl-tRNA amidotransferase subunit B PEPE_1369 1358475 - 1357015 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A TERM 1614 1357080 - 1357070 - G 71 -6.8 -4.11216 | opp_overlap 1357053 1357070 GTCGCAGCTTCAAAA GCTG CCC CAGC TTGATACATCGTTTC PEPE_1370 1358789 - 1358475 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C TERM 1615 1358512 - 1358523 + g 77 -5.8 -4.78848 | AGAATTGCTGGTACA CGGA TAAA TCCG TTTTCTGTTTCAGGG PEPE_1371 1359966 - 1358809 - | hypothetical protein TERM 1616 1359749 - 1359766 + g 70 -7 -3.83717 | TCGGCAGTTAATCCC CGTGAC TTGCTT GTCACG TATTTTCCATTTTTA PEPE_1372 1362308 - 1360035 - | ATP-dependent DNA helicase PcrA TERM 1617 1362388 - 1362371 - R 85 -4.8 -5.59357 | opp_overlap 1362371 ATTATATCAAAAAAA GCCGGT TTATTT ACCGAC TTTAACAGAGTTTTA PEPE_1373 1363540 - 1362401 - | phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) TERM 1618 1363308 - 1363333 + g 79 -7 -4.60487 | opp_overlap 1363307 TCGTATAGAACAATT TTACAACGTT CTGCAA AGCGTTGTAA TTTTTCCCCATCATG PEPE_1374 1364151 - 1363579 - | adenine/guanine phosphoribosyltransferase-like protein PEPE_1375 1364691 - 1364161 - | N-acetylmuramidase TERM 1619 1364892 - 1364902 + r 75 -2.6 -5.69793 | opp_overlap 1364892 TGACAACTAATCAAG TTAA AAA TTAA TTTTTTCTTTCATAT PEPE_1376 1365522 - 1364899 - | hypothetical protein TERM 1620 1365722 - 1365708 - g 71 -4.2 -4.70515 | overlap 1365709 CAGACTTAAAAGAAA TCCAAG TTG CTTGGG GCTATGACCATCATG PEPE_1377 1365596 - 1366543 + | D-3-phosphoglycerate dehydrogenase TERM 1621 1366548 - 1366606 + T 90 -4.9 -5.85011 | gap 1 GTGGTTACTAAAAAA CTTGGTACATAGTAATTTTAATAGACTC CCTA GAGT-TGTTATTATTGCTACGTATCAAG TTTTTTTAATTTTTA PEPE_1378 1368468 - 1366612 - | hypothetical protein TERM 1622 1367292 - 1367276 - G 72 -5.1 -4.69053 | TAGTATGCAACAAAA CTAGCAT CTA AAGCTAG TAGGACTTTGAGTAA TERM 1623 1367750 - 1367731 - G 70 -2.8 -5.13741 | TGAACCGAACAAAAA GGCTGTAA CACA TTGCAACC ATGGTTGATGTCGAT TERM 1624 1370989 - 1370972 - g 76 -4.1 -5.2422 | opp_overlap 1370971, overlap 1370974 AATGACAGCAAAAAA TATGGCA ATAC TGCCATG ATAAATTTGGTTGAA TERM 1625 1370987 - 1370974 - g 73 -6.7 -4.23988 | opp_overlap 1370971, overlap 1370972 TGACAGCAAAAAATA TGGCA ATAC TGCCA TGATAAATTTGGTTG PEPE_1379 1368746 - 1371598 + | superfamily II DNA/RNA helicase PEPE_1380 1371653 - 1372225 + | hypothetical protein PEPE_1381 1372363 - 1372800 + | hypothetical protein TERM 1626 1372848 - 1372821 - T 100 -12.8 -4.29845 | opp_overlap 1372821 CAATTCAATCTAAAA GGCTTAGCTGTT TTTC AACGGCTAAGCC TTTTCAATTATTTAT TERM 1627 1372821 - 1372848 + T 100 -15 -4.40311 | opp_overlap 1372821 CAATTCAATCTAAAA GGCTTAGCTGTT TTTC AACGGCTAAGCC TTTTCAATTATTTAT PEPE_1382 1373354 - 1372872 - | DNA-binding ferritin-like protein (oxidative damage protectant) PEPE_1383 1373890 - 1373624 - | hypothetical protein TERM 1628 1373715 - 1373725 + g 72 -5.4 -4.68103 | AAATAAACCGATAGT GCAA ACA TTGC TTTTATTGACATTCG PEPE_1384 1374048 - 1374254 + | XRE family transcriptional regulator TERM 1629 1374434 - 1374473 + T 100 -14.4 -3.41527 | opp_overlap 1374434 1374437, overlap 1374437 TATCACTGCAATTAA TAACCCCCACGGATCGTT GTGC ATCGATTCATGGGGGTTA TTGTACTAAAAATTA TERM 1630 1374473 - 1374434 - T 100 -14.4 -3.36289 | opp_overlap 1374434 1374437, overlap 1374437 TATCACTGCAATTAA TAACCCCCACGGATCGTT GTGC ATCGATTCATGGGGGTTA TTGTACTAAAAATTA TERM 1631 1374470 - 1374437 - T 100 -11.7 -3.8186 | opp_overlap 1374434 1374437, overlap 1374434 CACTGCAATTAATAA CCCCCACGGATCGTT GTGC ATCGATTCATGGGGG TTATTGTACTAAAAA TERM 1632 1374437 - 1374470 + T 100 -11.7 -3.84406 | opp_overlap 1374437 1374434, overlap 1374434 CACTGCAATTAATAA CCCCCACGGATCGTT GTGC ATCGATTCATGGGGG TTATTGTACTAAAAA TERM 1633 1374677 - 1374710 + T 100 -11.2 -4.85177 | opp_overlap 1374677 ATATATCTAAAAAAA GGATTGACCTCTAT ATTACA ATAGAGATCAATCC TTTTTACTATAATTT TERM 1634 1374710 - 1374677 - T 100 -13.4 -5.51402 | opp_overlap 1374677 ATATATCTAAAAAAA GGATTGACCTCTAT ATTACA ATAGAGATCAATCC TTTTTACTATAATTT TERM 1635 1374828 - 1374809 - T 100 -8.6 -5.95539 | opp_overlap 1374809 TCTTAAACAAAAAAA CACTCTCC CAAA GGAAAGTG TTTTGAACGAAAATA PEPE_1385 1375242 - 1374850 - | SSU ribosomal protein S9P rplM 1375700 - 1375257 - | 50S ribosomal protein L13 PEPE_1387 1376572 - 1375826 - | pseudouridylate synthase PEPE_1388 1377375 - 1376575 - | ABC-type cobalt transport system, permease component CbiQ related transporter TERM 1636 1376824 - 1376846 + g 78 -3.4 -5.43414 | opp_overlap 1376819 ACTAAAATTAGCTCC TCTTGAGCGT TGG GCATTCAAGA TTTTTTCTGTCTCGT PEPE_1389 1378051 - 1377368 - | ABC-type cobalt transport system, ATPase component PEPE_1390 1379055 - 1378213 - | ABC-type cobalt transport system, ATPase component TERM 1637 1379157 - 1379143 - R 74 -5.6 -4.76892 | overlap 1379131 ATAGCAAGTTAAAAA CTCGCC GTG GGCTAG ACTAGGATTTCTCCA PEPE_1391 1379623 - 1379240 - | 50S ribosomal protein L17P PEPE_1392 1380589 - 1379645 - | DNA-directed RNA polymerase, alpha subunit/40 kD subunit PEPE_1393 1381062 - 1380673 - | 30S ribosomal protein S11 rpsM 1381448 - 1381083 - | 30S ribosomal protein S13 PEPE_1395 1381592 - 1381473 - | 50S ribosomal protein L36P PEPE_1396 1381838 - 1381620 - | translation initiation factor 1 TERM 1638 1381911 - 1381888 - R 88 -6.8 -5.23396 | AATAACCAACAAAAA GCCTCAAAAT ATGT ATTTCGAAGC TAAACCTGAATTAGC TERM 1639 1382004 - 1381990 - R 72 -7.2 -3.89131 | opp_overlap 1381990 1381988 CCAACAAGCACGAAA TTAGAG AGC CTCTAA TACTTTTTTGACTTC PEPE_1397 1382649 - 1381990 - | adenylate kinase TERM 1640 1382160 - 1382205 + g 72 -9.2 -2.88033 | opp_overlap 1382170 1382171, overlap 1382159 1382201 GCTTGTCGTCCTCAC GTTGGAAGAATTCGTGATGT CCGCAA ACATCACAAGTTCCTTCAAC CTTTGGTGGATTGTA secY 1383980 - 1382682 - | preprotein translocase subunit SecY PEPE_1399 1384414 - 1383980 - | 50S ribosomal protein L15P rpmD 1384624 - 1384442 - | 50S ribosomal protein L30 rpsE 1385141 - 1384638 - | 30S ribosomal protein S5 rplR 1385519 - 1385163 - | 50S ribosomal protein L18 TERM 1641 1385479 - 1385489 + g 84 -2.4 -5.68489 | CGAACGCGTGCATGA CGAC GTT GACG TTTTTTGTTCTTATC rplF 1386108 - 1385572 - | 50S ribosomal protein L6 TERM 1642 1385901 - 1385927 + g 79 -5.8 -4.9645 | opp_overlap 1385900, overlap 1385902 TGTTGTTGAAGTTAG CGCGTGTAGTAC CAT GTAATGCACGCA TTTTGTTATTGTCGT TERM 1643 1385902 - 1385926 + g 78 -9.3 -3.56244 | opp_overlap 1385900, overlap 1385901 GTTGTTGAAGTTAGC GCGTGTAGTAC CAT GTAATGCACGC ATTTTGTTATTGTCG rpsH 1386532 - 1386134 - | 30S ribosomal protein S8 PEPE_1405 1386753 - 1386568 - | SSU ribosomal protein S14P rplE 1387314 - 1386772 - | 50S ribosomal protein L5 TERM 1644 1387279 - 1387290 + g 81 -4.4 -5.45802 | overlap 1387256 CAAATCAGGTGTGAT TTCG TTAA CGAA TTTTTCTTTTAAACG PEPE_1407 1387653 - 1387342 - | 50S ribosomal protein L24P PEPE_1408 1388054 - 1387686 - | 50S ribosomal protein L14P PEPE_1409 1388367 - 1388101 - | SSU ribosomal protein S17P PEPE_1410 1388588 - 1388394 - | 50S ribosomal protein L29 rplP 1389012 - 1388578 - | 50S ribosomal protein L16 PEPE_1412 1389686 - 1389015 - | SSU ribosomal protein S3P rplV 1390046 - 1389690 - | 50S ribosomal protein L22 PEPE_1414 1390340 - 1390059 - | SSU ribosomal protein S19P rplB 1391215 - 1390367 - | 50S ribosomal protein L2 PEPE_1416 1391525 - 1391238 - | 50S ribosomal protein L23P PEPE_1417 1392148 - 1391525 - | 50S ribosomal protein L4P PEPE_1418 1392799 - 1392167 - | 50S ribosomal protein L3P TERM 1645 1392409 - 1392421 + g 76 -4.8 -5.14563 | opp_overlap 1392390, overlap 1392401 GCGCCATCGGACCAC GACG TTGAC CGTC TTTTTTGATAACACC rpsJ 1393134 - 1392826 - | 30S ribosomal protein S10 TERM 1646 1393093 - 1393118 + g 85 -2.7 -5.79595 | gap 1, opp_overlap 1393086, overlap 1393086 ATCTAAGATACGGTG TTCGTATGCC TTTAGGC GG-ATACGAA TTTTTTGTTTTGCCA TERM 1647 1393405 - 1393363 - R 100 -10.3 -5.49568 | gap 1, opp_overlap 1393363 1393404, overlap 1393404 AATTTAAAATAAAAA GAAGTTTTCTCC-TTCAATT AAAT AATTGAAAAAAGAAAACTTC TTTAATTTTAAAGAT PEPE_1420 1395513 - 1393420 - | elongation factor G TERM 1648 1395600 - 1395571 - R 100 -11.7 -5.24129 | opp_overlap 1395568, overlap 1395582 TGTTTTTAGAAAAAA TGACTACTATATG CATC CATATAATAGTCA TCATGGTTGCAATGA PEPE_1421 1396106 - 1395636 - | 30S ribosomal protein S7 TERM 1649 1395932 - 1395946 + g 74 -5 -4.89063 | overlap 1395933 CTTCGAAAACTCCTG TTGGTT CTG AACCAG TTTCTTTTTCGATAA rpsL 1396535 - 1396122 - | 30S ribosomal protein S12 TERM 1650 1396390 - 1396406 + g 77 -6.5 -4.57569 | opp_overlap 1396388 1396390 1396400 GTCATTGTACCAACA CGTGTAG CAA CTCCACG TTTTTGAGGAGCTGG TERM 1651 1397817 - 1397828 + G 85 -7.2 -5.01811 | opp_overlap 1397816 ATTCCCCAAAGAATG GCGC CTCA GCGC TTTTTCATTTGATGA PEPE_1424 1397584 - 1398534 + | inosine-uridine nucleoside N-ribohydrolase TERM 1652 1398570 - 1398604 + T 100 -15.9 -4.96848 | opp_overlap 1398570 TACCATAATAAAAAA GCTCACCAAACTGTG TTATC CACAATTTGGTGAGC TTTTTATCTAAAAAC TERM 1653 1398604 - 1398570 - T 100 -18.1 -5.58179 | opp_overlap 1398570 TACCATAATAAAAAA GCTCACCAAACTGTG TTATC CACAATTTGGTGAGC TTTTTATCTAAAAAC PEPE_1425 1402260 - 1398622 - | DNA-directed RNA polymerase subunit beta' rpoB 1405898 - 1402290 - | DNA-directed RNA polymerase subunit beta TERM 1654 1405038 - 1405049 + g 85 -3 -5.74086 | ACCTAAAAGACGAGT CTTA AGGC TAAG TTTTTTATTTACTTT TERM 1655 1406018 - 1405987 - R 80 -7.6 -4.2787 | gap 1, opp_overlap 1405987 TTAGCAAAAAAAAAC CAAAAATAGTCCTCT ATA AGAA-ACTATTTTTG CTTTTTTATCTAGAA TERM 1656 1406134 - 1406144 + r 75 -2.6 -5.54885 | AACAACTTGCAATGT TAAA TTA TTTA TTTTTTATTAATGTT PEPE_1427 1408603 - 1406138 - | ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones TERM 1657 1407090 - 1407106 + g 70 -7.3 -3.86283 | opp_overlap 1407090 1407093, overlap 1407093 TCTAAATTAATCAAG CGATCTG ACT CAGATTG TTTCATCTGCGTTAA PEPE_1428 1409095 - 1408631 - | transcriptional repressor of class III stress genes TERM 1658 1409418 - 1409395 - H 95 -5.4 -6.14618 | opp_overlap 1409395 1409398 TAGAAAACAAAAAAA GCATTAATCA TATC CGATTAATAC TTTTTTAAGCGATGC TERM 1659 1409813 - 1409790 - H 90 -12.6 -2.79796 | opp_overlap 1409812 TTCTATTTTATTAGA CCATTGAGAA TCGC TTCTCAATGG AGGATACAGGGCTCG TERM 1660 1409812 - 1409842 + H 73 -9 -2.82623 | opp_overlap 1409790 1409820, overlap 1409841 GAATCGCTTCTCAAT GGAGGATACAGG GCTCGAA CCTGTGACCTCC TGCTTGTAAGGCAGA PEPE_1435 1409933 - 1410022 + | hypothetical protein TERM 1661 1410071 - 1410095 + T 93 -10.1 -4.67755 | opp_overlap 1410071 GATTCCATAAAAAAA TAAGAGATCTC AAT GCGATCTCTTA TTTTTAGATAACTAT TERM 1662 1410095 - 1410071 - T 100 -10.1 -5.626 | opp_overlap 1410071 GATTCCATAAAAAAA TAAGAGATCTC AAT GCGATCTCTTA TTTTTAGATAACTAT PEPE_1436 1411391 - 1410111 - | seryl-tRNA synthetase PEPE_1437 1412302 - 1411670 - | deoxynucleoside kinase PEPE_1438 1413834 - 1412383 - | amino acid transporter TERM 1663 1412724 - 1412707 - G 72 -7 -3.98083 | GACCCAAGCCACAAA GCCAGT CAGTCC ACTGGC AGCAACTAACCATAT TERM 1664 1413125 - 1413105 - G 70 -4.7 -4.55826 | TGTAAAATAGTAAAA TTCGCCAAA ATA CTTGGCTAA TGGCCTTCGGAACAC TERM 1665 1413411 - 1413395 - G 70 -5.9 -4.26076 | opp_overlap 1413395 TCAGTCTCACCAAAA GCTTTAA CCG TCAAAGC ATTTACCAAGAAAAC TERM 1666 1413862 - 1413842 - R 72 -4.7 -4.77165 | TCTGCCATAAGAAAA CCTCCTATA AAA TAAAAGAGG CGCTGTTGATTTTCA TERM 1667 1413933 - 1413888 - R 100 -10.7 -5.42198 | opp_overlap 1413892 1413894, overlap 1413894 TTTCAAAAAACAAAA TAAAAAGCCTTTTTGTGAGCA TTCC TACGCACAAAAAGACTGTTTA AAATCATTAGTCAAA TERM 1668 1413927 - 1413894 - R 100 -9.7 -5.70761 | opp_overlap 1413894 1413892, overlap 1413888 AAAACAAAATAAAAA GCCTTTTTGTGAGCA TTCC TACGCACAAAAAGAC TGTTTAAAATCATTA TERM 1669 1414105 - 1414115 + r 71 -6.8 -3.99315 | opp_overlap 1414104 GATCTACTAATAATT GAGG CAA CCTC TTCTTTCGATGTGAT PEPE_1439 1414655 - 1414155 - | acetyltransferase PEPE_1440 1414745 - 1415542 + | esterase/lipase PEPE_1441 1415679 - 1416998 + | transcriptional regulator TERM 1670 1417049 - 1417019 - T 100 -17 -4.62669 | opp_overlap 1417019 TAATTAAAGAACAAA GGGCAATCCTGATT TTA AATCGGGATTGCCC TTTTTATAATTATTC TERM 1671 1417019 - 1417049 + T 100 -19.2 -5.03945 | opp_overlap 1417019 TAATTAAAGAACAAA GGGCAATCCTGATT TTA AATCGGGATTGCCC TTTTTATAATTATTC PEPE_1442 1417931 - 1417059 - | fructokinase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase TERM 1672 1418095 - 1418076 - R 95 -5 -6.11392 | opp_overlap 1418076 AAAGAAATAAAAAAA TGTCCAAA TTAA TTTGGGCA TTTTTTAATCCTACT TERM 1673 1418076 - 1418095 + r 91 -7.2 -5.19212 | opp_overlap 1418076 AAAGAAATAAAAAAA TGTCCAAA TTAA TTTGGGCA TTTTTTAATCCTACT PEPE_1443 1418597 - 1418106 - | hypothetical protein PEPE_1444 1419359 - 1418613 - | hypothetical protein TERM 1674 1419470 - 1419445 - R 100 -7.5 -5.60993 | opp_overlap 1419447 TTTTGCATAAAAAAA GAGTAGGTTGC CGAA GCTCCCTACTC TCATAACTATTTTAA TERM 1675 1419477 - 1419495 + r 74 -3.2 -5.33026 | opp_overlap 1419477 TCCCTACTCTCATAA CTATTTTA ATT TAAATTAG TTTTTGTTTACGTTA PEPE_1445 1419692 - 1419492 - | cold-shock DNA-binding protein family protein TERM 1676 1419873 - 1419892 + r 71 -8 -3.22884 | CCTTCTTTAATATTT TGTTTTAG GCCG CTAAAACA TTGATAGATTAATAA TERM 1677 1420027 - 1420008 - R 90 -5 -5.73339 | overlap 1420011 ATAATCAGAAAAAAA GAACCTAA AAGA TTAGGCCC TTAAGTAAAATATTT TERM 1678 1420024 - 1420011 - R 74 -5.3 -4.9041 | overlap 1420008 ATCAGAAAAAAAGAA CCTAA AAGA TTAGG CCCTTAAGTAAAATA PEPE_1446 1420725 - 1420042 - | membrane-associated phospholipid phosphatase TERM 1679 1420596 - 1420580 - G 80 -2.9 -5.62288 | overlap 1420581 1420582 TCAAGAAAAGAAAAA GCCGTTC CTT GAACGAT ACTACTAAATAACTG PEPE_1447 1421397 - 1420750 - | HD superfamily hydrolase PEPE_1448 1422956 - 1421394 - | HD superfamily hydrolase TERM 1680 1421927 - 1421941 + g 74 -8.6 -3.66646 | opp_overlap 1421927 1421926 1421924 CAACAGCAAAAATAC CTGCTA GCT TAGCAG TTTCAATAGAATGTT PEPE_1449 1423508 - 1423095 - | hypothetical protein PEPE_1450 1424423 - 1423539 - | pseudouridylate synthase, 23S RNA-specific TERM 1681 1424928 - 1424939 + G 73 -4.4 -4.91511 | TGGATTAGTTAGTGA TACC GTGG GGTA TTTTTCTAATCCGGT PEPE_1451 1424716 - 1425270 + | hypothetical protein PEPE_1452 1425343 - 1425489 + | hypothetical protein TERM 1682 1425545 - 1425490 - T 100 -26.2 -4.08307 | gap 1, opp_overlap 1425503, overlap 1425503 CCAAAAGTTAAATAA TAAACTATAAAAAGAGCTGTAAACGAA TAC TTCGTTTACAGCTCTTTTT-TAGTTTA CCCGTGTCCATGCGT TERM 1683 1425533 - 1425503 - T 100 -20 -5.0809 | opp_overlap 1425503, overlap 1425490 AATAAACTATAAAAA GAGCTGTAAACGAA TAC TTCGTTTACAGCTC TTTTTTAGTTTACCC TERM 1684 1425503 - 1425533 + T 100 -20 -5.37593 | opp_overlap 1425490 1425503 AATAAACTATAAAAA GAGCTGTAAACGAA TAC TTCGTTTACAGCTC TTTTTTAGTTTACCC PEPE_1453 1426326 - 1425538 - | hypothetical protein TERM 1685 1426409 - 1426368 - R 82 -7.5 -4.45485 | opp_overlap 1426373, overlap 1426373 ATTATACTCAGAAAA TAAAACAAGAGACCATACC AAAT AGTATCATCTCTTGTTTTT AATTATATATTTTAA TERM 1686 1426404 - 1426373 - R 91 -7.4 -5.19275 | opp_overlap 1426373, overlap 1426368 ACTCAGAAAATAAAA CAAGAGACCATACC AAAT AGTATCATCTCTTG TTTTTAATTATATAT TERM 1687 1426373 - 1426404 + r 73 -4.5 -4.9755 | opp_overlap 1426373 1426368 ACTCAGAAAATAAAA CAAGAGACCATAC CAAATA GTATCATCTCTTG TTTTTAATTATATAT PEPE_1454 1427741 - 1426431 - | xanthine/uracil permease TERM 1688 1427554 - 1427542 - G 76 -4.8 -5.055 | TTAACCTGTAAAAAA GTGG CAACT CCAC ACATGAAAATATCTA TERM 1689 1427694 - 1427709 + g 74 -6.2 -4.60255 | TAAAATCGTCTTTGG TGTTGA TAGT TCAACA TTTTTGGCACCTTGT TERM 1690 1428174 - 1428143 - g 76 -10.3 -2.59475 | opp_overlap 1428173, overlap 1428142 1428149 GAGTTACACATCAAT GCCAAATTCCATT TTAACT AACGGAATCTGGC CCGCAGCGGGGATTA TERM 1691 1428585 - 1428558 - g 73 -7.2 -4.1899 | opp_overlap 1428552 1428557 TCAGTTGATTTAAAA GATTTAATTGAT GAAT ATCACTTAAATC CTGATTTTGACGGTT TERM 1692 1429058 - 1429074 + G 73 -6.5 -4.21194 | CAACATGTATTGGCT GAGCTGT ACT ACCGCTC TTTTAGGTGATACAG PEPE_1455 1427922 - 1429328 + | dipeptidase A PEPE_1456 1429781 - 1429428 - | hypothetical protein TERM 1693 1429735 - 1429751 + g 75 -2.4 -5.40004 | TTAGTGCTATCTAAG TTATTA CCCTT TAATAA TTTTTTGATTTCATC TERM 1694 1429938 - 1429915 - R 85 -8.2 -4.44245 | ATACTACTCACAAAA CGGACAAGTT AATT AACTCATCCG TCGTAATTTCACTAT PEPE_1457 1431594 - 1430335 - | phosphoribosylamine--glycine ligase PEPE_1458 1433143 - 1431608 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1695 1431800 - 1431815 + g 72 -9 -3.34894 | opp_overlap 1431799, overlap 1431798 CGCATTTTTAAAATT GGCTGA ACCT TCAGCC TGTTTAACCGCAATT PEPE_1459 1433739 - 1433158 - | phosphoribosylglycinamide formyltransferase PEPE_1460 1434785 - 1433736 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 1696 1434259 - 1434273 + g 73 -2.8 -5.27477 | opp_overlap 1434259, overlap 1434261 AGGCCAATTAAATAA TCTCCA TTG TGGACA TTTTTTGCTTGGAGT PEPE_1461 1436254 - 1434785 - | amidophosphoribosyltransferase PEPE_1462 1438443 - 1436239 - | phosphoribosylformylglycinamidine synthase domain-containing protein PEPE_1463 1439138 - 1438464 - | phosphoribosylformylglycinamidine synthase domain-containing protein PEPE_1464 1439395 - 1439141 - | phosphoribosylformylglycinamidine (FGAM) synthase, PurS component PEPE_1465 1440116 - 1439388 - | phosphoribosylaminoimidazole-succinocarboxamide synthase PEPE_1466 1441255 - 1440116 - | phosphoribosylaminoimidazole carboxylase ATPase subunit PEPE_1467 1441721 - 1441239 - | phosphoribosylcarboxyaminoimidazole (NCAIR) mutase TERM 1697 1441805 - 1441839 + r 95 -8.9 -5.03314 | opp_overlap 1441809 TATCAAGATATTTTA CGAACTTTTTATT TTATTTTTT AATAAAAAGTTCG TTTTTTAAAAATAAA TERM 1698 1441929 - 1441899 - R 95 -4.8 -6.15536 | AATTAATAAAAAAAA GCCTTAATGCAG TATTTAG CTACATCAAAGC TTTTTGGAAATTAAT PEPE_1468 1442437 - 1441940 - | amidase TERM 1699 1442783 - 1442812 + H 100 -7.9 -5.56263 | opp_overlap 1442783, overlap 1442777 GTGGTACCGCGGAAA GTCTTTCGTCCCT TGTC ATGGATGAAAGGC TTTTTCTTTTATCCT PEPE_1469 1442859 - 1443866 + | asparagine synthetase AsnA PEPE_1470 1444569 - 1443943 - | redox-sensing transcriptional repressor Rex TERM 1700 1444465 - 1444488 + g 75 -4.6 -5.04222 | gap 1, opp_overlap 1444453 1444465 TAACCGTTCCAAAAC GGCTGAAGAGA CTT TATCTTC-GCC TTTTTCATTTAGTTC PEPE_1471 1445564 - 1444587 - | Beta-lactamase class C related penicillin binding protein PEPE_1472 1446619 - 1445582 - | O-sialoglycoprotein endopeptidase PEPE_1473 1447220 - 1446606 - | acetyltransferase PEPE_1474 1447911 - 1447183 - | metal-dependent protease-like protein, putative molecular chaperone TERM 1701 1448048 - 1448017 - R 100 -13.2 -4.19735 | opp_overlap 1448011 1448019 TCTTTCAAAATTAAA GAGGTTATGACAAA TTTT TATGTCATAACCTC AATTAAAATTATTTA TERM 1702 1448019 - 1448046 + r 77 -10 -2.55818 | opp_overlap 1448017, overlap 1448011 TTTCAAAATTAAAGA GGTTATGACAAA TTTT TATGTCATAACC TCAATTAAAATTATT PEPE_1475 1449066 - 1448074 - | UDP-galactose 4-epimerase PEPE_1476 1449849 - 1449112 - | Acyl-ACP thioesterase PEPE_1477 1450737 - 1449859 - | methyltransferase TERM 1703 1450078 - 1450097 + g 72 -9.4 -2.8203 | overlap 1450077 GCCTCGTACTTCATT TTCAGCAA TCCA TTGCTGAA CTTCTTCAATACTTC PEPE_1478 1451080 - 1450739 - | regulator of replication initiation timing TERM 1704 1450941 - 1450967 + g 72 -5.2 -4.69656 | overlap 1450936 AGACGCTCTCTCAAA TGTTGATTTTCA ATT TGAAGTTCAGCA TTTTCTTCCATGATT PEPE_1479 1452098 - 1451082 - | DNA polymerase III subunit delta' PEPE_1480 1452433 - 1452098 - | hypothetical protein PEPE_1481 1453078 - 1452449 - | thymidylate kinase TERM 1705 1453224 - 1453191 - R 100 -6.8 -5.54192 | opp_overlap 1453191 ATTAATTTAAAAAAA TGAGCTAACGCGCT GGTAAA ATCGCATTAACTCA TCTTTTAATTATTTT PEPE_1482 1453842 - 1453243 - | DNA replication and repair protein RecR PEPE_1483 1454183 - 1453869 - | hypothetical protein TERM 1706 1454151 - 1454163 + g 70 -7.7 -3.66178 | TTGCATTTGACGCAT CATGC TTT GCATG TTTCCCATTCCACCA PEPE_1484 1455944 - 1454199 - | DNA polymerase III, gamma/tau subunit TERM 1707 1454302 - 1454312 + g 81 -5.4 -5.23396 | overlap 1454294 GATTGCTCTGATGCC TCTG GTT CAGA TTTTTCTTGATTCTT TERM 1708 1455980 - 1456008 + r 80 -10.3 -2.70704 | opp_overlap 1455980, overlap 1455979 CTTTTTTTAAGAAAA GAACCCTTAGCCC AAT GGACTAAGAGTTC GTTAATTTACCCAAT TERM 1709 1456008 - 1455980 - R 100 -14.7 -4.63218 | opp_overlap 1455980 1455979 CTTTTTTTAAGAAAA GAACCCTTAGCCC AAT GGACTAAGAGTTC GTTAATTTACCCAAT PEPE_1485 1456642 - 1456157 - | tRNA-adenosine deaminase PEPE_1486 1457240 - 1456635 - | 16S RNA G1207 methylase RsmC TERM 1710 1456726 - 1456739 + g 72 -2.3 -5.24129 | overlap 1456726 1456727 ATTAATTTTTTAGCT GAGGG CGCC CCCTG TTTTTTCTGAAGAAC TERM 1711 1457330 - 1457377 + H 100 -6.7 -5.64421 | gap 2 TAATAAACACCGCCA GCACAATATATAGTGGGATTATA AAAA TATA-TCCT-CTACATATTGTGC TTTTTTATTTCAAAT PEPE_1487 1457452 - 1457682 + | ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit TERM 1712 1459080 - 1459093 + G 72 -5.3 -4.64676 | TCGGTCGAAACTATG GTTAG AGCG CTAAC TTTTGTTACGGATCA PEPE_1488 1457784 - 1459949 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1713 1460693 - 1460673 - g 76 -6.9 -4.21997 | opp_overlap 1460672 1460681 TAACGAAGAAAAATA TGTTCATAC TTT GTATGACCA AGTTGGTTGGACTGA nrdF 1459969 - 1460922 + | ribonucleotide-diphosphate reductase subunit beta TERM 1714 1460962 - 1460938 - T 100 -12.3 -5.96894 | opp_overlap 1460938 ATCCAAATAAAAAAA TCCAACTTCCA TTT TAGAAGTTGGA TTTTTTGTAACGCTC TERM 1715 1460938 - 1460962 + T 100 -10.1 -5.252 | opp_overlap 1460938 ATCCAAATAAAAAAA TCCAACTTCCA TTT TAGAAGTTGGA TTTTTTGTAACGCTC TERM 1716 1461061 - 1461032 - T 100 -16.7 -6.09196 | opp_overlap 1461032 TTTAAAACAAAAAAA GAGCTATTTCCAT CCAA ATGGAAATAGCTC TTTTAATAACTTAAG TERM 1717 1461032 - 1461061 + T 100 -16.7 -4.30978 | opp_overlap 1461032 TTTAAAACAAAAAAA GAGCTATTTCCAT CCAA ATGGAAATAGCTC TTTTAATAACTTAAG PEPE_1490 1461450 - 1461085 - | 50S ribosomal protein L12P PEPE_1491 1461998 - 1461492 - | 50S ribosomal protein L10P TERM 1718 1462069 - 1462039 - R 100 -9.8 -5.71983 | opp_overlap 1462039 TGAACCATAAAAAAA TTCGTACCCCAGAA AGA CTCTGAGACACGAA TAGTTTCATACGTTC TERM 1719 1462118 - 1462105 - R 73 -8.1 -3.38207 | CAGGCAATATATTAA GGCCA AACA TGGCC ACCTGAGTCTTAGGT rplA 1462887 - 1462198 - | 50S ribosomal protein L1 rplK 1463405 - 1462980 - | 50S ribosomal protein L11 PEPE_1494 1464079 - 1463534 - | transcription antitermination protein nusG TERM 1720 1464125 - 1464110 - R 95 -5.4 -6.09196 | opp_overlap 1464110 TCCAAAATAAAAAAA CTCCGT AAGC ACGAAG TTTCTAATCAACAAA PEPE_1495 1464345 - 1464187 - | protein translocase subunit secE/sec61 gamma rpmG 1464507 - 1464358 - | 50S ribosomal protein L33 PEPE_1497 1465156 - 1464563 - | ComX TERM 1721 1465231 - 1465270 + r 79 -6.6 -4.67904 | opp_overlap 1465238, overlap 1465238 CGCATTTTTCGTAAA TAAAAAACGAATAATTGG CATT CCAATCATTCGTTTCTAA TTTTTAAAGTTGATG TERM 1722 1465238 - 1465263 + r 88 -9.1 -4.2687 | opp_overlap 1465238, overlap 1465231 TTCGTAAATAAAAAA CGAATAATTGG CATT CCAATCATTCG TTTCTAATTTTTAAA TERM 1723 1465263 - 1465238 - R 100 -11.3 -5.63517 | opp_overlap 1465238 1465231 TTCGTAAATAAAAAA CGAATAATTGG CATT CCAATCATTCG TTTCTAATTTTTAAA PEPE_1498 1466032 - 1465274 - | rRNA methylase PEPE_1499 1466438 - 1466025 - | ribonuclease III family protein PEPE_1500 1467843 - 1466431 - | cysteinyl-tRNA synthetase TERM 1724 1466667 - 1466681 + g 70 -2.8 -5.14477 | ATTGATTAATTTGCT CAGC ATTCACG GCTG TTTTTTCACTATATA TERM 1725 1467852 - 1467863 + r 74 -5.8 -4.67755 | TAATCATTTTTTCAC TCCC TACG GGGA TTTTTAGCTACCTCT gltX 1469511 - 1468024 - | glutamyl-tRNA synthetase TERM 1726 1469046 - 1469069 + g 89 -3.8 -5.80727 | opp_overlap 1469037 GAATTACAGGTTCAA TTCCTGCTGC CTTA GCATCAGCAA TTTTTTGTTCTTTTT PEPE_1502 1470711 - 1469581 - | integral membrane protein PEPE_1503 1472099 - 1470729 - | DNA repair protein RadA TERM 1727 1471685 - 1471663 - G 71 -4.1 -4.93365 | GGGTACAAGTAAAAA CGTTCACTG TTAAC CTGTAAACG TTCGGCGCGCATCTT TERM 1728 1472039 - 1472023 - G 75 -9.5 -3.30124 | opp_overlap 1472021 TTCCATCTTCCACAA TTAGGAC AAC GTCCTAA GAATTTAGGTGAAAC PEPE_1504 1472732 - 1472199 - | deoxyuridine 5'-triphosphate nucleotidohydrolase PEPE_1505 1472869 - 1473198 + | acetyltransferase TERM 1729 1473885 - 1473858 - g 73 -7 -4.13767 | opp_overlap 1473858 TGTTGGACGCCAAAA TGGTCCAGAAGT TTTG ACTGCTCGACCA TAATTCTAATCATTT PEPE_1506 1473202 - 1473888 + | ribose-5-phosphate isomerase A TERM 1730 1474072 - 1474056 - g 87 -8.1 -4.76041 | CACAGTTACTAAAAA TGGAATT CTT AATTCCA GTCGTAACCTTGCAG PEPE_1507 1473958 - 1475304 + | aminopeptidase C TERM 1731 1475372 - 1475328 - T 100 -12.9 -5.5112 | opp_overlap 1475328 TTTATCAATAAAAAA GCGACTAGCTGTGGACCAAAT GAA AATCGGTCCTTAACTAGTCGC TTTTTTACTACTCCA TERM 1732 1475328 - 1475372 + T 100 -10.7 -5.1861 | opp_overlap 1475328 TTTATCAATAAAAAA GCGACTAGCTGTGGACCAAAT GAA AATCGGTCCTTAACTAGTCGC TTTTTTACTACTCCA PEPE_1508 1475760 - 1475380 - | transcriptional regulator PEPE_1509 1477011 - 1475824 - | arabinose efflux permease TERM 1733 1477171 - 1477152 - R 85 -5 -5.64274 | opp_overlap 1477154, overlap 1477154 TTATGCATAAAAAAA GAGCCTAA ATAA TTAGGCTT CTTTCAAGATAATTT TERM 1734 1477154 - 1477169 + r 74 -7.6 -3.9281 | opp_overlap 1477152 1477154 ATGCATAAAAAAAGA GCCTAA ATAA TTAGGC TTCTTTCAAGATAAT TERM 1735 1477169 - 1477154 - R 82 -7.6 -4.46105 | opp_overlap 1477154, overlap 1477152 ATGCATAAAAAAAGA GCCTAA ATAA TTAGGC TTCTTTCAAGATAAT PEPE_1510 1477844 - 1477164 - | phosphoglycerate mutase TERM 1736 1477995 - 1477971 - R 95 -9.3 -5.27399 | opp_overlap 1477971 GAAGATACTAAAAAA CTGTGGTCCAC ATT ACGAACCACAG TTTAGTTTTAATTCC PEPE_1511 1478987 - 1478016 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1737 1479586 - 1479602 + G 75 -6.6 -4.44046 | AACATTGACGTTCCT GCTTCT CAAAA AGAAGC TTTGTTTAAAATAGA PEPE_1512 1479229 - 1479690 + | hypothetical protein TERM 1738 1479712 - 1479740 + T 100 -11.2 -5.56673 | opp_overlap 1479712 TTTGGACCATAAAAA TAACCCATAACT ATTAA AGTTGTGGGTTA TTTTTTATTATAAAT TERM 1739 1479740 - 1479712 - T 93 -9 -4.91109 | opp_overlap 1479712 TTTGGACCATAAAAA TAACCCATAACT ATTAA AGTTGTGGGTTA TTTTTTATTATAAAT PEPE_1513 1480248 - 1479748 - | phosphotransferase system, mannose/fructose-specific component IIB PEPE_1514 1483210 - 1480280 - | transcriptional regulator PEPE_1515 1483786 - 1483406 - | hypothetical protein TERM 1740 1483881 - 1483862 - R 100 -7.8 -5.80364 | opp_overlap 1483862 ATTTTAATAAAAAAA GCCTAGGC CATA GCCCAGAC TTAATTTAAGTTTAT PEPE_1516 1484807 - 1483896 - | mannose-specific PTS system component IID PEPE_1517 1485631 - 1484825 - | mannose-specific PTS system component IIC TERM 1741 1485651 - 1485661 + r 75 -2.6 -5.53288 | ATTAATCCTCCGTTA TAAT TAA ATTA TTTTTTTGCGTTAAG TERM 1742 1485676 - 1485688 + r 80 -7.7 -4.29227 | ATTTTTTTGCGTTAA GCTCA TCT TGAGC TTTCTTCATAATTGC PEPE_1518 1486630 - 1485659 - | phosphotransferase system, mannose/fructose-specific component IIA TERM 1743 1486483 - 1486470 - G 73 -6.7 -4.25104 | opp_overlap 1486464 TCTTGGTTACTAAAA GAAGC AACT GCTTC TTGAAGTTTTGCTCT TERM 1744 1486813 - 1486792 - R 91 -9.5 -4.4767 | opp_overlap 1486792 1486791 1486794 TTATCTAGGATAAAA GATGGGACT GATT AATCCCATC GTGTTTTTCAAAGTT TERM 1745 1487107 - 1487086 - R 100 -13.1 -5.24799 | opp_overlap 1487086 TTAGAAACACAAAAA GGACTCCTA TTTC TAGGAGTCC TTTTTTATTGATGCG TERM 1746 1487086 - 1487107 + r 100 -13.1 -5.5112 | opp_overlap 1487086 TTAGAAACACAAAAA GGACTCCTA TTTC TAGGAGTCC TTTTTTATTGATGCG PEPE_1520 1487730 - 1487284 - | hypothetical protein TERM 1747 1487627 - 1487655 + g 74 -9.7 -2.57211 | overlap 1487626 TGATAGCGACCACCA GTGGTTTTTAAAC GTT GATTAAAGACCAC CTTATACGGAAAACT PEPE_1521 1489900 - 1487732 - | transcriptional accessory protein TERM 1748 1488283 - 1488298 + g 85 -2.5 -5.73672 | GTTCATAGGCTTTAG GTCCT AAGCGA GGGAC TTTTTTTAATTGTTT TERM 1749 1489163 - 1489179 + g 73 -6.6 -4.21194 | GTATCGTTCGATTCC TTGAGG ATCAA CCTCAA TTTTAGCTCGTAGGA TERM 1750 1489659 - 1489673 + g 73 -3.6 -5.02074 | overlap 1489661 TCTGGAGTTAATTTT TGTTGA TCT TCAATA TTTTTTAAAACATCG TERM 1751 1489970 - 1489939 - R 82 -8.8 -4.00097 | opp_overlap 1489939 ATAATCTAACAAGAA GAGGCTGAGGAA CCAACTTC TCCCTCAACCTC TCATGTTGCTATATT PEPE_1522 1490425 - 1489991 - | hypothetical protein TERM 1752 1490197 - 1490218 + g 77 -5.9 -4.74103 | CGATAAATTTGATAG GAGCTTGCA TTTC TGTAAGTTC TTTTTCAATTGAACG PEPE_1523 1493089 - 1490438 - | cation transport ATPase TERM 1753 1493176 - 1493136 - R 100 -10.6 -5.14563 | gap 1 CTGGGTATGAAAAAA GACCCATGTGCGCAAGGAA TCTT TTCCC-ACACACATGAGTC TCACTAAATTAAGAT nadE 1494135 - 1493317 - | NAD synthetase PEPE_1525 1495616 - 1494153 - | nicotinate phosphoribosyltransferase TERM 1754 1495817 - 1495796 - g 85 -10.3 -4.17762 | CAGTTTTTAAAACAA GTTGAAGAA GATC TTCTTCAAC ATCAAAATCGTTTTA TERM 1755 1496105 - 1496078 - g 75 -3.5 -5.26875 | overlap 1496090 GCCGTAATCAAAAAA GTTGTTCATAA AGTTCA TCATGAACATC CTGGTATTAATTTGG PEPE_1526 1495724 - 1496455 + | N-acetylmannosaminyltransferase TERM 1756 1496475 - 1496443 - T 100 -14.4 -5.41941 | opp_overlap 1496443 TAAAGCAAATAAAAA GAAGGAAAAATAGG ATTAG CCTATTCTTCCTTC TTTTTTATTAACGAT TERM 1757 1496443 - 1496475 + T 100 -12.2 -5.45652 | opp_overlap 1496443 TAAAGCAAATAAAAA GAAGGAAAAATAGG ATTAG CCTATTCTTCCTTC TTTTTTATTAACGAT PEPE_1527 1497184 - 1496483 - | GntR family transcriptional regulator PEPE_1528 1498353 - 1497211 - | N-acetylglucosamine 6-phosphate deacetylase TERM 1758 1497407 - 1497391 - G 72 -7.3 -3.90856 | overlap 1497399 AATTCCGCAATTAAA GAAACGC ATT GCATTTC TAAATGCATCATCAA PEPE_1529 1499210 - 1498419 - | pyrroline-5-carboxylate reductase TERM 1759 1499390 - 1499410 + r 95 -11.3 -3.86897 | opp_overlap 1499390 TTAGATACAAAAAAA CATCATATC ATT GATATGATG TTTCTGAAAACTAGA TERM 1760 1499410 - 1499390 - R 100 -11.3 -5.76633 | opp_overlap 1499390 TTAGATACAAAAAAA CATCATATC ATT GATATGATG TTTCTGAAAACTAGA PEPE_1532 1500490 - 1499675 - | phosphohydrolase TERM 1761 1500513 - 1500528 + r 79 -3.3 -5.58454 | opp_overlap 1500513 ACCTCTCTGATAAAT CGAAT ATACTA ATTCG TTTTTTTGATATACA PEPE_1533 1501028 - 1500495 - | dihydrofolate reductase TERM 1762 1501049 - 1501075 + r 70 -8.1 -3.15354 | opp_overlap 1501049, overlap 1501047 CCTCCAAAATAAAAA GATGAACTAAG CATAA CCTAGTTCATC TCTTGAATTCAAATA TERM 1763 1501075 - 1501049 - R 100 -11 -5.45802 | opp_overlap 1501049 1501047 CCTCCAAAATAAAAA GATGAACTAAGC ATA ACCTAGTTCATC TCTTGAATTCAAATA PEPE_1534 1502562 - 1501096 - | dipeptide/tripeptide permease TERM 1764 1501329 - 1501352 + g 74 -9 -3.57561 | opp_overlap 1501329 TTACAGATAAACCAA TTGGTGAGAT TAAC ATTTCACCAA TTTCAACAATTGCCC TERM 1765 1502285 - 1502297 + g 83 -7.7 -4.62783 | opp_overlap 1502285 ATGATCAATACACCA CCGTA AAA TACGG TTTTTCGACTACCTA TERM 1766 1502644 - 1502618 - R 100 -11.7 -5.21709 | CTGTATATGAAAAAA TGCGCCTTAAC TTAAC ATTAAGGCGCA TCCAAACAAATGCCG TERM 1767 1502764 - 1502739 - R 100 -11.3 -4.84311 | CGGCATATAACAAAA GGATGCTAACT TTCC AGTTAACATCC ATACAGCCTAACTCC TERM 1768 1505695 - 1505714 + r 95 -12.2 -3.66803 | opp_overlap 1505694 1505693 TTCAGTCCTACAACC CCAGGAAG CAAG CTTCCTGG TTTGGGCTCTTCCCG TERM 1769 1505993 - 1506009 + r 75 -9.5 -2.86185 | opp_overlap 1505992, overlap 1505990 CCTAACTTAACCTAT CTTTACC TAC GGTAAAG TGATTAATTGAGTTT TERM 1770 1506174 - 1506155 - R 85 -8 -4.57912 | opp_overlap 1506159, overlap 1506159 CAAAGAACAAAAGAA TAAACAAC CTTA GTTGTTTA ATGGAGAATAGCGGG TERM 1771 1506170 - 1506159 - R 70 -4.4 -4.76233 | opp_overlap 1506159, overlap 1506155 GAACAAAAGAATAAA CAAC CTTA GTTG TTTAATGGAGAATAG TERM 1772 1506422 - 1506441 + r 72 -9.2 -2.65808 | overlap 1506419 AAAGGAGGTGATCCA GCCGCAGG TACT CCTACGGC TACCTTGTTACGACT TERM 1773 1507771 - 1507754 - R 82 -8.5 -4.09864 | opp_overlap 1507752 1507750 1507754 AGCCATCTTTTAAAA GAAAACC ATGC GGTTTTC TCTGTTATACGGTAT TERM 1774 1507754 - 1507771 + r 74 -8.5 -3.18386 | opp_overlap 1507754, overlap 1507752 1507750 AGCCATCTTTTAAAA GAAAACC ATGC GGTTTTC TCTGTTATACGGTAT TERM 1775 1508319 - 1508309 - R 70 -4 -5.0538 | opp_overlap 1508296 1508309, overlap 1508316 GTTTATTTTAAAAAA GTAA TAA TTAC TTAGTAAAGGATTAG TERM 1776 1508442 - 1508394 - R 74 -9.3 -3.04398 | gap 1, opp_overlap 1508400 1508405, overlap 1508374 1508397 1508405 TTCCTTGCGTAAAAT GCAC-AAAAAAAGAATGAGAAT TTTGCT ATTCTCATTCTTTTCTTAGTTC TTATTTAATCGATGG TERM 1777 1508438 - 1508397 - R 87 -12 -2.74605 | opp_overlap 1508400 1508405, overlap 1508374 1508394 1508405 CTTGCGTAAAATGCA CAAAAAAAGAATGAGAAT TTTGCT ATTCTCATTCTTTTCTTA GTTCTTATTTAATCG TERM 1778 1508400 - 1508435 + r 80 -9.3 -3.65535 | opp_overlap 1508374 1508397 1508394 1508405, overlap 1508405 GCGTAAAATGCACAA AAAAAGAATGAGAAT TTTGCT ATTCTCATTCTTTTC TTAGTTCTTATTTAA TERM 1779 1508405 - 1508430 + r 93 -9.2 -4.84262 | opp_overlap 1508374 1508397 1508394 1508405, overlap 1508400 AAATGCACAAAAAAA GAATGAGAAT TTTGCT ATTCTCATTC TTTTCTTAGTTCTTA TERM 1780 1508430 - 1508405 - R 100 -9.2 -5.68039 | opp_overlap 1508405 1508400, overlap 1508374 1508397 1508394 AAATGCACAAAAAAA GAATGAGAAT TTTGCT ATTCTCATTC TTTTCTTAGTTCTTA lysS 1509943 - 1508447 - | lysyl-tRNA synthetase TERM 1781 1508995 - 1509010 + g 72 -7.6 -3.77119 | opp_overlap 1508994 1508995 GTAGACGTTCAAAAT CTTGAC CTAA GTCAAG TTCTGTTCCTTGGTA PEPE_1543 1511008 - 1510010 - | tRNA-dihydrouridine synthase PEPE_1544 1512006 - 1511092 - | disulfide bond chaperones of the HSP33 family TERM 1782 1511600 - 1511584 - G 70 -7.3 -3.73072 | opp_overlap 1511575 1511582 1511584 AACTTGTCCAGTAAA TGGATCT CCT AGACCCA TATCTTTGGTAACAG TERM 1783 1512020 - 1511995 - G 91 -9.1 -5.14563 | gap 1, opp_overlap 1511995 GCTTTCATCAAAAAA TCGTGAG-TGCA TTT TGCAACCCACGA TTCTTAAATTATTGA TERM 1784 1511995 - 1512020 + g 70 -6.9 -3.77953 | gap 1, opp_overlap 1511995 GCTTTCATCAAAAAA TCGTGAG-TGCA TTT TGCAACCCACGA TTCTTAAATTATTGA PEPE_1545 1514110 - 1512029 - | FtsH-2 peptidase TERM 1785 1512223 - 1512237 + g 76 -10 -3.09327 | overlap 1512225 AAGTAGTTTTCTTTT CAGGCA TCT TGCCTG TCTTGAATAAACTAA TERM 1786 1513078 - 1513068 - G 71 -6.8 -4.11394 | ATCTTACGGTCAAAA CGTC CCG GACG TAGTAAAGCTGGGTC PEPE_1546 1514740 - 1514204 - | hypoxanthine phosphoribosyltransferase TERM 1787 1514518 - 1514502 - G 70 -7.3 -3.85114 | opp_overlap 1514502 AAATCTGACACCAAA TCAACAG TTC CCGTTGA TTCCATGCCACCTTT PEPE_1547 1516100 - 1514730 - | tRNA(Ile)-lysidine synthetase, MesJ TERM 1788 1515532 - 1515563 + g 91 -9.6 -4.87892 | gap 1, opp_overlap 1515529, overlap 1515533 CGTAAAAATTCAGTA GTACGGTTGGTTTGA TCT TCAAACC-ACCGTAA TTTATTTTCTTGAGC TERM 1789 1515533 - 1515562 + g 100 -13.1 -3.5165 | gap 1, opp_overlap 1515529, overlap 1515532 GTAAAAATTCAGTAG TACGGTTGGTTTGA TCT TCAAACC-ACCGTA ATTTATTTTCTTGAG PEPE_1548 1516609 - 1516103 - | RNA-binding protein TERM 1790 1516746 - 1516717 - R 100 -8.7 -5.87996 | opp_overlap 1516717 TAATTAACAAAAAAA GCATTAAGATGAC CTAC GTCATTTCAATGC TTTAATCTAATTTTA TERM 1791 1516717 - 1516746 + r 79 -8.7 -3.92694 | opp_overlap 1516717 TAATTAACAAAAAAA GCATTAAGATGAC CTAC GTCATTTCAATGC TTTAATCTAATTTTA PEPE_1549 1517115 - 1516759 - | septum formation initiator TERM 1792 1517044 - 1517020 - G 71 -4.2 -4.71418 | opp_overlap 1517039 1517040 AACACCTAAAATAAA TAGTGCTCGT TGTTT ACGGGCCCTA GCATAGGGATTTACT PEPE_1550 1517457 - 1517188 - | ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein PEPE_1551 1519037 - 1517454 - | polysaccharide transporter PEPE_1552 1522544 - 1519047 - | transcription-repair coupling factor PEPE_1553 1523120 - 1522563 - | peptidyl-tRNA hydrolase TERM 1793 1523215 - 1523229 + H 76 -7.1 -4.1721 | TATTACCATATTATT GACCC CAAGC GGGTC TTTTAACCTCTAACT PEPE_1554 1523371 - 1524333 + | malate dehydrogenase (NAD) TERM 1794 1524397 - 1524372 - f 100 -14.9 -5.10077 | opp_overlap 1524372 AAATAGTTGAAAAAA CGACTCTGAAT AAAT ATTCAGAGTCG TTTTTTTATGCCCAA TERM 1795 1524372 - 1524397 + F 100 -14.9 -5.60993 | opp_overlap 1524372 AAATAGTTGAAAAAA CGACTCTGAAT AAAT ATTCAGAGTCG TTTTTTTATGCCCAA TERM 1796 1524774 - 1524759 - g 79 -4 -5.44721 | ATCATCTTAAAAAAA CAAGGA AACT TCCTTA CATAATACTTGGTGC TERM 1797 1525924 - 1525895 - g 75 -2.1 -5.4505 | GTTTGGAATAAAAAA CGTAATGCTACCC TAAA AGGTAAAAATACG GATGGCTCTAATTAT TERM 1798 1526053 - 1526037 - g 75 -6.5 -4.39426 | opp_overlap 1526038, overlap 1526038 GAGATTGGTATAAAA CCCATGG TTC CCATGGT TGTGTCAACACTCCA TERM 1799 1526038 - 1526052 + G 79 -10 -3.48924 | opp_overlap 1526037 1526038 AGATTGGTATAAAAC CCATGG TTC CCATGG TTGTGTCAACACTCC TERM 1800 1526052 - 1526038 - g 78 -10 -3.23174 | opp_overlap 1526038, overlap 1526037 AGATTGGTATAAAAC CCATGG TTC CCATGG TTGTGTCAACACTCC PEPE_1555 1524728 - 1526131 + | hypothetical protein PEPE_1556 1526197 - 1526841 + | CBS domain-containing protein TERM 1801 1526877 - 1526857 - T 100 -14.1 -5.63517 | opp_overlap 1526857 TTCGTAAATAAAAAA GGATTCGCA GTT TGCGAATCC TTTTTTCTATCTTGA TERM 1802 1526857 - 1526877 + T 100 -14.1 -5.47431 | opp_overlap 1526857 TTCGTAAATAAAAAA GGATTCGCA GTT TGCGAATCC TTTTTTCTATCTTGA PEPE_1557 1527305 - 1526943 - | toxin-antitoxin addiction module toxin component MazF (an endoRNAse) PEPE_1558 1527583 - 1527344 - | hypothetical protein PEPE_1559 1528762 - 1527638 - | alanine racemase PEPE_1560 1529120 - 1528764 - | phosphopantetheinyl transferase (holo-ACP synthase) TERM 1803 1528898 - 1528910 + g 70 -2.7 -5.1101 | AATTAATTTCGATGT CTTGA AAA TTAAG TTTTTTACCTAATCC PEPE_1561 1530790 - 1529210 - | superfamily II DNA/RNA helicase PEPE_1562 1532465 - 1531083 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 1804 1532626 - 1532595 - R 95 -8.9 -5.00616 | opp_overlap 1532575 1532571, overlap 1532577 1532574 1532575 1532571 TTTTTTGCTAAAAAA GAGAACTTATATC TTATCT GACACAAGTTCTC AATTTAATATAATGC PEPE_1563 1533412 - 1532630 - | hypothetical protein PEPE_1564 1534342 - 1533446 - | heat shock protein HtpX TERM 1805 1534209 - 1534189 - G 85 -9.7 -4.04206 | overlap 1534191 TCATGGCCATATAAA TAGCGGCAA TTA CTGCCGCCA TAATAATCCCTGCCA TERM 1806 1534207 - 1534191 - G 80 -10.1 -3.615 | overlap 1534189 ATGGCCATATAAATA GCGGCAA TTA CTGCCGC CATAATAATCCCTGC PEPE_1565 1534939 - 1534358 - | hypothetical protein PEPE_1566 1535719 - 1535030 - | sortase (surface protein transpeptidase) PEPE_1567 1535796 - 1537025 + | major facilitator superfamily permease TERM 1807 1537099 - 1537129 + T 100 -11.9 -4.7254 | opp_overlap 1537099 CAGACCACAAAAAAA GAGGTACCACTGA TAAAT TCAGCGGTGCCTC TTTTTGATAACCAAT TERM 1808 1537129 - 1537099 - T 100 -11.9 -5.69473 | opp_overlap 1537099 CAGACCACAAAAAAA GAGGTACCACTGA TAAAT TCAGCGGTGCCTC TTTTTGATAACCAAT PEPE_1568 1537398 - 1537153 - | 50S ribosomal protein L31P rho 1538788 - 1537502 - | transcription termination factor Rho PEPE_1570 1540085 - 1538814 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1809 1539733 - 1539719 - G 70 -8.6 -3.16668 | opp_overlap 1539717 1539719 TAATATGCTGATCAA TTGGTC TTG GACCAA TATTATCTCCACCTG TERM 1810 1539719 - 1539733 + g 72 -8.6 -3.32202 | opp_overlap 1539719, overlap 1539717 TAATATGCTGATCAA TTGGTC TTG GACCAA TATTATCTCCACCTG TERM 1811 1540207 - 1540225 + r 80 -6 -5.05301 | opp_overlap 1540207, overlap 1540199 CAACAAATAAAAAAA TAGCCGAA AAA TTCGACTA TTTTTATGCTTATTT TERM 1812 1540225 - 1540207 - R 100 -8.2 -6.08342 | opp_overlap 1540207 1540199 CAACAAATAAAAAAA TAGCCGAA AAA TTCGACTA TTTTTATGCTTATTT PEPE_1571 1541833 - 1540235 - | CTP synthetase TERM 1813 1540733 - 1540747 + g 70 -8.6 -3.05596 | opp_overlap 1540732 1540727 ACGAGCATATTGAAT GGAATG AAT CATTCC TTCAATCCCACGATC TERM 1814 1540792 - 1540804 + g 70 -7.7 -3.61894 | opp_overlap 1540773 GAACAATGATTCCAT CTTGC CCG GCAAG TTGTTCAGCAACATT TERM 1815 1541677 - 1541659 - G 73 -3.8 -5.15167 | overlap 1541661 CATCAGTAACAAAAA CTTCACCA TGT TGGTAAGG ACTCATCGTTCCTGG TERM 1816 1541921 - 1541959 + r 73 -8.2 -3.49618 | opp_overlap 1541927, overlap 1541929 ATACTGATACAACAA TAAAAATACCCCCTATTC TGA GAATAGGGGGTATTACCG TTCATTGTCTGAAAA TERM 1817 1541953 - 1541927 - R 100 -18.2 -5.35721 | opp_overlap 1541921 1541929 ATACAACAATAAAAA TACCCCCTATTC TGA GAATAGGGGGTA TTACCGTTCATTGTC TERM 1818 1541929 - 1541951 + r 100 -16.4 -3.11178 | opp_overlap 1541927, overlap 1541921 ACAACAATAAAAATA CCCCCTATTC TGA GAATAGGGGG TATTACCGTTCATTG PEPE_1572 1542582 - 1542046 - | DNA-directed RNA polymerase, delta subunit PEPE_1573 1543067 - 1542627 - | hypothetical protein PEPE_1574 1543221 - 1544570 + | HD superfamily phosphohydrolase PEPE_1575 1544582 - 1545394 + | HAD superfamily hydrolase PEPE_1576 1545763 - 1545383 - | hypothetical protein TERM 1819 1545444 - 1545473 + g 80 -2.7 -5.60993 | opp_overlap 1545452 TAGCTTAGTATTAAA CGAGTAAATGGGG TGAA CCGCATGGGCTCG TTTTTTTGTGCAGCA TERM 1820 1546023 - 1545989 - g 85 -2.9 -5.72207 | opp_overlap 1545993, overlap 1545992 1545993 CTTAAAGTAAAAAAA CAAGTTCCAACGCCA ACCGA TAGCGTTGAAAATTT TCTAAAACAAATTTA TERM 1821 1546020 - 1545992 - g 73 -4.6 -4.90519 | opp_overlap 1545993, overlap 1545989 1545993 AAAGTAAAAAAACAA GTTCCAACGCCA ACCGA TAGCGTTGAAAA TTTTCTAAAACAAAT TERM 1822 1546019 - 1545993 - g 71 -8.1 -3.50651 | opp_overlap 1545993, overlap 1545992 1545989 AAGTAAAAAAACAAG TTCCAACGCCA ACCGA TAGCGTTGAAA ATTTTCTAAAACAAA PEPE_1577 1545896 - 1546837 + | transcriptional regulator TERM 1823 1546877 - 1546830 - T 100 -16.6 -3.25061 | opp_overlap 1546830 1546841, overlap 1546841 CTACAGATAACAAAG CGGAATAAAAAGGAGTTACGGC CTAA GCCATAACTCCTTTTTATTTTG TTCTATAAACTATGC TERM 1824 1546830 - 1546877 + T 100 -18.8 -3.51365 | opp_overlap 1546830 1546841, overlap 1546841 CTACAGATAACAAAG CGGAATAAAAAGGAGTTACGGC CTAA GCCATAACTCCTTTTTATTTTG TTCTATAAACTATGC TERM 1825 1546866 - 1546841 - T 100 -14.1 -5.11112 | opp_overlap 1546830 1546841, overlap 1546830 AAAGCGGAATAAAAA GGAGTTACGGC CTAA GCCATAACTCC TTTTTATTTTGTTCT TERM 1826 1546841 - 1546866 + T 100 -11.9 -5.64321 | opp_overlap 1546841 1546830, overlap 1546830 AAAGCGGAATAAAAA GGAGTTACGGC CTAA GCCATAACTCC TTTTTATTTTGTTCT PEPE_1578 1547414 - 1546887 - | hypothetical protein PEPE_1579 1548048 - 1547518 - | hypothetical protein PEPE_1580 1549457 - 1548117 - | Na+-driven multidrug efflux pump PEPE_1581 1550136 - 1549477 - | metal-dependent membrane protease PEPE_1582 1550314 - 1550565 + | hypothetical protein PEPE_1583 1551269 - 1550637 - | phosphatase TERM 1827 1550851 - 1550865 + g 72 -5 -4.83269 | AATTCAATTGGATCA GCATGA GGT TTATGC TTTTTCGTATCATCT TERM 1828 1551363 - 1551335 - R 82 -6.1 -5.0916 | opp_overlap 1551338 TGCCCAATATAAAAA GAAGAAAATCC TCATTTG GGACTTTCTCC TTAAAATAAAACATT PEPE_1584 1553026 - 1551386 - | ABC-type oligopeptide transport system, periplasmic component TERM 1829 1553153 - 1553122 - H 100 -14.6 -5.80003 | TTAACAAACAAAAAA CCGGCTAACTACAC CGCA GTGTAATTAACCGG TTCAACTAATCCCAA TERM 1830 1553233 - 1553211 - H 81 -9.2 -3.90922 | opp_overlap 1553203 ACGCCTGCCAAATAA CATGTGGTCT TTT AGACAACATG CGCAAGCTTCAACTA TERM 1831 1554781 - 1554754 - g 71 -6.4 -4.14472 | opp_overlap 1554754 CCAACATTCGTAAAA TCGTCACCTA CGAATTAC TAAGTGACGA TGATTACGTGAAATA PEPE_1585 1553457 - 1555322 + | FAD(NAD)-dependent oxidoreductase PEPE_1586 1556250 - 1555420 - | hypothetical protein TERM 1832 1555998 - 1556018 + g 70 -4.7 -4.64861 | overlap 1556001 GTAATAGTAAACTAC CCACTGTAA TTC TTGCAGTAG TTTCTTTTCCCAAAG TERM 1833 1556316 - 1556287 - R 82 -5.1 -5.40072 | gap 1, opp_overlap 1556287 1556282 TTCCTTCTAAAAAAA GGAGG-TAAGCC AAATTAA GACTTAACCTCC TTTTATTATAACTAA PEPE_1587 1557621 - 1556335 - | D-alanyl transfer protein PEPE_1588 1557857 - 1557624 - | D-alanyl carrier protein PEPE_1589 1559073 - 1557880 - | D-alanyl transfer protein TERM 1834 1557988 - 1558003 + g 71 -3.3 -5.11112 | AAATTTATTATGTGG GAATC GATCCG GATTC TTTTTCTTCAAGTTT TERM 1835 1558812 - 1558828 + g 80 -3 -5.61881 | gap 1, opp_overlap 1558812 GAAGAACCGCAATAA CGAACAC CCAC GTGT-CG TTTTTCTTTTTACGA PEPE_1590 1560599 - 1559073 - | D-alanine-activating enzyme TERM 1836 1559218 - 1559238 + g 78 -3.3 -5.40072 | ATCGCAACTGTTAAT TGAATTTGA GAA TCGAACTCA TTTTTTTCAGGAACA PEPE_1591 1560768 - 1560619 - | D-Ala-teichoic acid biosynthesis protein TERM 1837 1561038 - 1560988 - R 100 -9.3 -5.51165 | gap 1, opp_overlap 1560988, overlap 1561003 AAAAGTTTAAAAAAA GCTAAAAATTA-GAAATACCGCTG TCTC CAGCGGTACTAAATAATTTCTAGC TTTTATGTGTTATTT TERM 1838 1560988 - 1561038 + r 72 -4.9 -4.74989 | gap 1, opp_overlap 1560988 1561003 AAAAGTTTAAAAAAA GCTAAAAATTAGAAA-TACCGCTG TCTC CAGCGGTACTAAATAATTTCTAGC TTTTATGTGTTATTT TERM 1839 1561022 - 1561003 - R 100 -12.2 -4.2687 | opp_overlap 1560988, overlap 1560988 GCTAAAAATTAGAAA TACCGCTG TCTC CAGCGGTA CTAAATAATTTCTAG PEPE_1592 1561566 - 1561048 - | hypothetical protein PEPE_1593 1562191 - 1561610 - | hypothetical protein TERM 1840 1562269 - 1562245 - R 100 -10.1 -5.38047 | opp_overlap 1562245 TATTTACACAAAAAA CACCAATGC AACTGGG GCATTGGTG TTTAGACTGTTTTAT TERM 1841 1562245 - 1562269 + r 86 -10.1 -3.7229 | opp_overlap 1562245 TATTTACACAAAAAA CACCAATGC AACTGGG GCATTGGTG TTTAGACTGTTTTAT PEPE_1594 1562949 - 1562491 - | transcriptional regulator TERM 1842 1563059 - 1563002 - H 89 -12.6 -2.70704 | gap 1, opp_overlap 1563007 1563016, overlap 1563004 1563007 1563008 1563018 ATCTTTTAAACTAAT TATAACTTCTC-TAACATCTTTGTCAA ACAAG TTGACAAAGATGTTATGATAACTTATA GTATTAAAGAAAAGT TERM 1843 1563057 - 1563004 - H 83 -10.8 -2.89569 | gap 1, opp_overlap 1563007 1563016, overlap 1563002 1563007 1563008 1563018 CTTTTAAACTAATTA TAACTTCTC-TAACATCTTTGTCAA ACAAG TTGACAAAGATGTTATGATAACTTA TAGTATTAAAGAAAA TERM 1844 1563007 - 1563054 + H 73 -8.1 -3.52073 | gap 1, opp_overlap 1563004 1563002 1563007 1563008 1563018, overlap 1563016 TTAAACTAATTATAA CTTCTC-TAACATCTTTGTCAA ACAAG TTGACAAAGATGTTATGATAAC TTATAGTATTAAAGA TERM 1845 1563054 - 1563007 - H 75 -8.1 -3.58914 | gap 1, opp_overlap 1563007 1563016, overlap 1563004 1563002 1563008 1563018 TTAAACTAATTATAA CTTCTC-TAACATCTTTGTCAA ACAAG TTGACAAAGATGTTATGATAAC TTATAGTATTAAAGA TERM 1846 1563053 - 1563008 - H 86 -11.6 -2.74625 | gap 1, opp_overlap 1563007 1563016, overlap 1563007 1563004 1563002 1563018 TAAACTAATTATAAC TTCTC-TAACATCTTTGTCAA ACAAG TTGACAAAGATGTTATGATAA CTTATAGTATTAAAG TERM 1847 1563016 - 1563044 + H 100 -13.4 -3.45033 | opp_overlap 1563008 1563007 1563004 1563002 1563018, overlap 1563007 TTATAACTTCTCTAA CATCTTTGTCAA ACAAG TTGACAAAGATG TTATGATAACTTATA TERM 1848 1563042 - 1563018 - H 81 -10.2 -3.03338 | opp_overlap 1563016 1563007, overlap 1563008 1563007 1563004 1563002 ATAACTTCTCTAACA TCTTTGTCAA ACAAG TTGACAAAGA TGTTATGATAACTTA PEPE_1595 1563098 - 1564576 + | major facilitator superfamily permease PEPE_1596 1564576 - 1565340 + | hypothetical protein TERM 1849 1565383 - 1565357 - T 100 -14.6 -5.2204 | opp_overlap 1565357 TACAACTAATAAAAA CACGCTGAACTT TTG AAGTTCAACGTG TTTTTTGTTATTCAA TERM 1850 1565357 - 1565383 + T 100 -12.4 -5.64873 | opp_overlap 1565357 TACAACTAATAAAAA CACGCTGAACTT TTG AAGTTCAACGTG TTTTTTGTTATTCAA PEPE_1597 1567073 - 1565391 - | hypothetical protein TERM 1851 1565473 - 1565489 + g 80 -2.9 -5.52909 | opp_overlap 1565473, overlap 1565486 TCTAATCGACTTAAA TGGCTGT CTT GCATCCA TTTTTTTGGATCTTC PEPE_1598 1568406 - 1567108 - | phosphotransferase system cellobiose-specific component IIC TERM 1852 1567852 - 1567882 + g 75 -9.8 -2.8934 | overlap 1567854 TACAAATACTGGTGC TAGCGATTCAGTAA CCA TTGCTGGAACGCTA TCTGGTAGTTTAACA TERM 1853 1567986 - 1567968 - G 73 -3.9 -5.08601 | TCATCCCAATAAAAA TACCTTG TCCAC CAAGATA ATCAAGCTTTAAAGC TERM 1854 1568342 - 1568352 + g 71 -4 -4.91109 | GCAGCCAATACTTTA TTAC CTT GTAA TTTTTCTGATAAAGG TERM 1855 1568932 - 1568953 + G 72 -2.3 -5.24515 | gap 1, overlap 1568933 ATTCCAATATTCACT ATG-CCAAAG AGA CTTTGGGCAA TTTTATTTCTTTCTT TERM 1856 1569490 - 1569472 - g 81 -3.2 -5.63103 | CTTTAATTAAAAAAA TCATTAAT CAT ATTGATGA CCATTTATATGAAAA PEPE_1599 1568625 - 1569779 + | AraC family transcriptional regulator TERM 1857 1569796 - 1569835 + T 100 -19.6 -3.59979 | opp_overlap 1569803, overlap 1569798 1569803 TTTTATTCATTGTTC AAGAAAAGCGCTTCGTAA TTTT TTACGAAGCGCTTTTCTA TTTCAGATGCAAACA TERM 1858 1569798 - 1569833 + T 100 -22.2 -3.38046 | opp_overlap 1569803, overlap 1569796 1569803 TTATTCATTGTTCAA GAAAAGCGCTTCGTAA TTTT TTACGAAGCGCTTTTC TATTTCAGATGCAAA TERM 1859 1569803 - 1569828 + T 100 -16.3 -4.79451 | opp_overlap 1569803, overlap 1569798 1569796 CATTGTTCAAGAAAA GCGCTTCGTAA TTTT TTACGAAGCGC TTTTCTATTTCAGAT TERM 1860 1569828 - 1569803 - T 100 -16.3 -4.63932 | opp_overlap 1569803 1569798 1569796 CATTGTTCAAGAAAA GCGCTTCGTAA TTTT TTACGAAGCGC TTTTCTATTTCAGAT PEPE_1600 1571147 - 1569870 - | alpha/beta fold family hydrolase PEPE_1601 1572139 - 1571231 - | transcriptional regulator/sugar kinase PEPE_1602 1573569 - 1572139 - | Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase TERM 1861 1573259 - 1573275 + g 71 -6.5 -4.08767 | AATCCTTTTTCATTT GGAGATG CTT CATCACC TTTTGGGAAAATACG TERM 1862 1573701 - 1573732 + r 83 -6 -5.15969 | opp_overlap 1573701 AATTTTACAAAAAAA TAGTCGAAAAGATT TTAA AATCTTCTCAACTA TTTTTTAAATTAAAA TERM 1863 1573732 - 1573701 - R 100 -10.4 -5.63504 | opp_overlap 1573701 AATTTTACAAAAAAA TAGTCGAAAAGATT TTAA AATCTTCTCAACTA TTTTTTAAATTAAAA PEPE_1603 1574952 - 1573771 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase PEPE_1604 1576164 - 1575040 - | Beta-lactamase class C related penicillin binding protein PEPE_1605 1577887 - 1576151 - | hypothetical protein TERM 1864 1577949 - 1577913 - R 89 -7.6 -5.06414 | gap 1, opp_overlap 1577913 CCTCCTTAATAAAAA CCATGAATT-AGATATA CATC TATATCTCAAATCATGG TTTTTACTTTTAATT TERM 1865 1577913 - 1577949 + r 91 -7.6 -5.13016 | gap 1, opp_overlap 1577913 CCTCCTTAATAAAAA CCATGAATT-AGATATA CATC TATATCTCAAATCATGG TTTTTACTTTTAATT PEPE_1606 1579024 - 1577963 - | ABC-type polysaccharide/polyol phosphate transport system, ATPase component PEPE_1607 1579855 - 1579040 - | ABC-type polysaccharide/polyol phosphate export system, permease component TERM 1866 1580002 - 1579973 - H 71 -5.2 -4.7329 | AAAATTATGTAAAAA CCAATAACGTAT ATTATA ATACATTATTAG ACACATAAATATTAA TERM 1867 1582806 - 1582792 - g 71 -4.2 -4.82901 | overlap 1582793 TCGTGTTCAGAAAAA TTTCGC TAA GCGAAT CGGTCGTTGGGATTT TERM 1868 1583079 - 1583113 + G 71 -6.5 -4.17417 | opp_overlap 1583079 TGCAAAAAGAACTCA GTGATGAATACGTCC TGCTT GTACGTCTTCATTAC TTTGTATCTCATTCA PEPE_1608 1580042 - 1585033 + | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase TERM 1869 1585059 - 1585094 + T 100 -16.5 -5.36441 | opp_overlap 1585059 TTATAAAATAAAAAA CCATAACGATTAGAT TTATAT ATCTAATCGTTATGG TTTTTTATCTACAAA TERM 1870 1585094 - 1585059 - T 100 -16.5 -5.86976 | opp_overlap 1585059 TTATAAAATAAAAAA CCATAACGATTAGAT TTATAT ATCTAATCGTTATGG TTTTTTATCTACAAA PEPE_1609 1586744 - 1585116 - | hypothetical protein TERM 1871 1586639 - 1586624 - G 70 -7.6 -3.60971 | opp_overlap 1586623 1586626 1586626, overlap 1586627 ATTCCAATCTCGAAA GATGGA TACC TCCATC CATTGTCAGCTTTAG PEPE_1610 1587670 - 1586744 - | glycosyltransferase-like protein PEPE_1611 1587769 - 1588188 + | GtcA family membrane protein TERM 1872 1588200 - 1588174 - T 100 -9.6 -4.89063 | opp_overlap 1588180, overlap 1588180 GTATTCAAAAACAAA CAAAAATGGGAT TAA ATCCCATTTTTT TATTGTTCAAATTTA TERM 1873 1588194 - 1588180 - T 100 -8.6 -5.63012 | opp_overlap 1588180, overlap 1588174 AAAAACAAACAAAAA TGGGAT TAA ATCCCA TTTTTTTATTGTTCA TERM 1874 1588180 - 1588194 + T 100 -8.6 -5.95946 | opp_overlap 1588180 1588174 AAAAACAAACAAAAA TGGGAT TAA ATCCCA TTTTTTTATTGTTCA PEPE_1612 1590227 - 1588200 - | NAD-dependent DNA ligase TERM 1875 1588992 - 1589014 + g 72 -9.2 -2.80016 | overlap 1588989 ACCACATGATGGACA GTGGGTTGGA ATA TCTAACTCAC TAATTCCTACTGGAC PEPE_1613 1591000 - 1590245 - | exonuclease III TERM 1876 1591579 - 1591565 - g 79 -8.6 -4.16397 | opp_overlap 1591565 1591564 CCTTAAAAGAAAAGA CTGGTT TAA AACCAG GATTTTATCTTAATG PEPE_1614 1591162 - 1591662 + | phospholipid-binding protein TERM 1877 1591707 - 1591666 - T 90 -9 -4.62069 | opp_overlap 1591666 TCGCGAGGTTAAAAA TAAGCTGCTACCAAAG GAAATAAAAT CTTTGATAACAGCTTA TTTTTTTGTCTTAAT TERM 1878 1591666 - 1591707 + T 91 -5.3 -5.82172 | opp_overlap 1591666 TCGCGAGGTTAAAAA TAAGCTGCTACCAAAGG AAATAAAA TCTTTGATAACAGCTTA TTTTTTTGTCTTAAT PEPE_1615 1593520 - 1591775 - | hypothetical protein TERM 1879 1593674 - 1593704 + r 100 -17 -5.39755 | opp_overlap 1593674 TTAGTAAACAAAAAA CATCAGCAACCACT CCA AGTGGCTGCTGATG TTTTTTATAATTGTG TERM 1880 1593704 - 1593674 - R 100 -19.2 -5.68438 | opp_overlap 1593674 TTAGTAAACAAAAAA CATCAGCAACCACT CCA AGTGGCTGCTGATG TTTTTTATAATTGTG PEPE_1616 1594708 - 1593737 - | malate permease PEPE_1617 1596454 - 1594826 - | malate dehydrogenase TERM 1881 1595408 - 1595425 + g 73 -2.7 -5.2291 | overlap 1595409 1595416 ATTATCAAATTCACT TCGTTTG CGAG CAAATGG TTTTTGTTCTGGTGT TERM 1882 1595822 - 1595811 - G 71 -4.4 -4.731 | AACTTATCAACAAAA TCGT AGTA ACGA TCACCTTTAATCCGT PEPE_1618 1596590 - 1597477 + | malolactic fermentation system transcription activator TERM 1883 1597514 - 1597482 - T 100 -9.3 -5.72053 | opp_overlap 1597482 TAATGAAATAAAAAA GTTTGATACTTGATT AAA AATCGCGTATCAAAC TTTTTTTGAATCTAC TERM 1884 1597482 - 1597514 + T 100 -11.5 -5.50499 | opp_overlap 1597482 TAATGAAATAAAAAA GTTTGATACTTGATT AAA AATCGCGTATCAAAC TTTTTTTGAATCTAC PEPE_1619 1598901 - 1597531 - | NAD(FAD)-dependent dehydrogenase PEPE_1620 1600009 - 1599095 - | Aryl-alcohol dehydrogenase related enzyme PEPE_1621 1600714 - 1600085 - | HAD superfamily hydrolase TERM 1885 1601312 - 1601331 + G 86 -10 -4.32436 | overlap 1601309 ATCGCTGGTGGAGCC GCAGCTGG CCTT TCAGCTGC TTTTAATGCTCCTAT PEPE_1622 1600844 - 1602364 + | chloride channel protein EriC TERM 1886 1602421 - 1602366 - f 95 -10.7 -4.35747 | gap 1, opp_overlap 1602374, overlap 1602374 1602377 CAAAAATAAACTAAA CCAC-TAAAGAAGCATCCAACAGCAC TTAGC GTGCTGCTTGATGCTTCTTTTTATAG TGAGTTTACGACTAG TERM 1887 1602412 - 1602374 - f 100 -16.9 -3.90684 | opp_overlap 1602374, overlap 1602366 1602377 AACTAAACCACTAAA GAAGCATCCAACAGCAC TTAGC GTGCTGCTTGATGCTTC TTTTTATAGTGAGTT TERM 1888 1602374 - 1602412 + F 100 -14.7 -4.92783 | opp_overlap 1602374 1602366 1602377 AACTAAACCACTAAA GAAGCATCCAACAGCAC TTAGC GTGCTGCTTGATGCTTC TTTTTATAGTGAGTT TERM 1889 1602409 - 1602377 - f 100 -12.8 -4.06533 | opp_overlap 1602374, overlap 1602374 1602366 TAAACCACTAAAGAA GCATCCAACAGCAC TTAGC GTGCTGCTTGATGC TTCTTTTTATAGTGA TERM 1890 1602582 - 1602566 - f 85 -6.7 -5.00196 | overlap 1602561 TTTCAAATAATAAAA CATTTTT TAA AAAAATG ATAAATATTAGACAA glpK 1602712 - 1604226 + | glycerol kinase PEPE_1624 1604244 - 1606061 + | glycerol-3-phosphate dehydrogenase PEPE_1625 1606075 - 1606794 + | glycerol uptake facilitator related permease (major Intrinsic protein family) TERM 1891 1606859 - 1606880 + T 100 -13.1 -5.77571 | opp_overlap 1606859 ATTAAAGCAGCAAAA CACCGGAAT TTAA ATTCCGGTG TTTTTATTTTTTAAT TERM 1892 1606880 - 1606859 - T 100 -13.1 -4.39989 | opp_overlap 1606859 ATTAAAGCAGCAAAA CACCGGAAT TTAA ATTCCGGTG TTTTTATTTTTTAAT PEPE_1626 1608432 - 1606891 - | C4-dicarboxylate anaerobic carrier dcuC PEPE_1627 1610225 - 1608804 - | amino acid transporter TERM 1893 1609997 - 1609969 - G 88 -8.9 -4.75219 | CAACCACTAATAAAA CCCATGAAAGG GCCAAAT CCTTTCTTGGG ATAAGAAAATATTCC PEPE_1628 1611809 - 1610391 - | amino acid transporter TERM 1894 1611427 - 1611413 - G 74 -5.8 -4.6821 | opp_overlap 1611413 AAGCCCAACAGAAAA TAATTG CTA CAATTA TTGATGGTAAGTTTT TERM 1895 1611893 - 1611842 - R 100 -12.7 -5.16151 | gap 1, opp_overlap 1611839 TAAATTTAATAAAAA TGGCAAAAGTAAACTGT-CTACTA TTTTC TAGTACCACAGTTCACTTCTGCCA TAAAATTATTTTTAG PEPE_1629 1613128 - 1611905 - | arginine deiminase PEPE_1630 1614110 - 1613181 - | carbamate kinase PEPE_1631 1615125 - 1614124 - | ornithine carbamoyltransferase PEPE_1632 1615396 - 1616241 + | signal transduction protein TERM 1896 1616341 - 1616311 - T 100 -7 -5.626 | CAGTCCATAAAAAAA GAACCCAACTAAAT TAA ATATAGTTAAGTTC TTCAAATAGTTTAAA TERM 1897 1616442 - 1616463 + T 83 -4.4 -5.68039 | GTACAAAACTAGATG CTCCCC ATTTTAACTC GGGGAG TTTTTTTATGACTTT PEPE_1633 1618302 - 1616503 - | oligopeptidase F PEPE_1634 1618837 - 1618370 - | hypothetical protein TERM 1898 1618972 - 1618943 - R 100 -10 -5.69793 | opp_overlap 1618943 ATATCAAACAAAAAA CTGTAGCCGAGC TTGATC GCCCCGCTACAG TTTTTTATCATCTAC TERM 1899 1618943 - 1618972 + r 100 -7.8 -5.34555 | opp_overlap 1618943 ATATCAAACAAAAAA CTGTAGCCGAGC TTGATC GCCCCGCTACAG TTTTTTATCATCTAC PEPE_1635 1620159 - 1618984 - | major facilitator superfamily permease PEPE_1636 1621242 - 1620259 - | biotin operon repressor PEPE_1637 1621829 - 1621269 - | hypothetical protein TERM 1900 1621871 - 1621916 + r 91 -7.3 -5.18357 | gap 1, opp_overlap 1621875 1621878 1621915, overlap 1621873 1621880 GAAACAAATTCATTA TATATAATAGTAACCT-ATTTT TAT AAAATAAGGTTACTATTACAGA TTTTTTAATCGATTA TERM 1901 1621873 - 1621914 + r 79 -9.9 -2.80873 | gap 1, opp_overlap 1621875 1621878, overlap 1621871 1621880 AACAAATTCATTATA TATAATAGTAACCT-ATTTT TAT AAAATAAGGTTACTATTACA GATTTTTTAATCGAT TERM 1902 1621912 - 1621875 - R 90 -12.5 -2.96984 | gap 1, opp_overlap 1621873 1621871 1621880, overlap 1621878 CAAATTCATTATATA TAATAGTAACCT-ATTTT TAT AAAATAAGGTTACTATTA CAGATTTTTTAATCG TERM 1903 1621909 - 1621878 - R 82 -9.8 -3.6217 | gap 1, opp_overlap 1621873 1621871 1621880, overlap 1621875 ATTCATTATATATAA TAGTAACCT-ATTTT TAT AAAATAAGGTTACTA TTACAGATTTTTTAA TERM 1904 1621880 - 1621907 + r 70 -8 -3.11191 | gap 1, opp_overlap 1621878 1621875, overlap 1621873 1621871 TCATTATATATAATA GTAACCT-ATTTT TAT AAAATAAGGTTAC TATTACAGATTTTTT TERM 1905 1622111 - 1622076 - R 100 -9.9 -5.60993 | opp_overlap 1622076 CGTTGTACAAAAAAA CCGAATTAAAGCAGC ATTCAA ACTACTCTAATTCGG TTTCGGTTTTTAATT PEPE_1638 1622602 - 1622129 - | S-ribosylhomocysteinase PEPE_1639 1624248 - 1622680 - | choline-glycine betaine transporter PEPE_1640 1625005 - 1624454 - | galactoside O-acetyltransferase TERM 1906 1624977 - 1624955 - G 75 -8.4 -3.80461 | opp_overlap 1624955 1624953 TAATTCAGCATCAAA CTGCTGGTAA GGT TCTCCAGCAG TCATTTTTTCTCGTT PEPE_1641 1626370 - 1625024 - | NAD(FAD)-dependent dehydrogenase TERM 1907 1625238 - 1625256 + g 75 -3.2 -5.1925 | overlap 1625232 AAACTGTCCTGTTCA TAAACAAT TAT ACTGTTTA TTTTTTCCGTTGTCG TERM 1908 1626291 - 1626302 + g 72 -5.8 -4.47328 | TCATAAATATCTACC TCCG TATC CGGA TTTTGTCGTAAGATT TERM 1909 1626895 - 1626905 + G 72 -5.4 -4.55287 | CGCAATTGAATGACT TTGG AAT CCAA TTTTGTCTCGATGAC PEPE_1642 1626531 - 1627211 + | C-di-GMP-specific phosphodiesterase TERM 1910 1627256 - 1627228 - T 88 -6.7 -5.30616 | opp_overlap 1627228 TTATGTAAAGAAAAA CCGCGTTGCGA GACACAA TCGTAACACGG TTTTTTATTTAGTTT TERM 1911 1627228 - 1627256 + T 100 -6.7 -5.74086 | opp_overlap 1627228 TTATGTAAAGAAAAA CCGCGTTGCGA GACACAA TCGTAACACGG TTTTTTATTTAGTTT PEPE_1643 1627694 - 1627272 - | heat shock protein Hsp20 TERM 1912 1627857 - 1627819 - R 91 -5.5 -5.7946 | gap 1 TTTTCAATAAAAAAA GACTTACCCAA-GAACAA GATA TTGTCCATTGCATAAGTC TTTATCTATAATTGT PEPE_1644 1628314 - 1627877 - | nucleoside diphosphate kinase PEPE_1645 1630501 - 1628411 - | cation transport ATPase TERM 1913 1628923 - 1628946 + g 70 -6.9 -3.76492 | opp_overlap 1628927, overlap 1628927 GCTTTAGTTCTTTAA TAAAGGAAA CTGCAT TTTCCTTTA TTTGGTCACCTTCAG TERM 1914 1630388 - 1630414 + g 78 -10.2 -3.272 | overlap 1630403 CATATGTCCATCGCC CATGTCATGCAT ATC GTGCATGTCATG TTGATGTCCACTCAT PEPE_1646 1630955 - 1630503 - | transcriptional regulator TERM 1915 1631054 - 1631034 - R 93 -6.2 -5.52096 | gap 1, opp_overlap 1631034 AAAGTCAAGAAAAAA GACCTCGAT TTCC ATCG-GGTC TTAATTAATTAAGAT PEPE_1647 1631996 - 1631082 - | DMT family permease TERM 1916 1631749 - 1631738 - G 75 -4.4 -5.01811 | CCATTAAACCAAAAA TAGC ATAC GCTA ACAACCATAAAACGG TERM 1917 1631876 - 1631865 - G 79 -5.8 -5.00895 | TCTAGCAGATAAAAA CCAG GAAG CTGG AATACTCTCTCCTTG TERM 1918 1632114 - 1632131 + r 74 -5.5 -4.77719 | opp_overlap 1632115, overlap 1632115 TGCTAATATAAAAAA ACAGGAG TAAT CTCCTGC TTTTATTACATTTTG TERM 1919 1632130 - 1632115 - R 100 -9 -5.80817 | opp_overlap 1632115 1632114 GCTAATATAAAAAAA CAGGAG TAAT CTCCTG CTTTTATTACATTTT TERM 1920 1632115 - 1632130 + r 78 -9 -3.45005 | opp_overlap 1632115, overlap 1632114 GCTAATATAAAAAAA CAGGAG TAAT CTCCTG CTTTTATTACATTTT PEPE_1648 1632594 - 1632151 - | transcriptional regulator PEPE_1649 1634490 - 1632868 - | ABC transporter ATPase TERM 1921 1633982 - 1633965 - G 74 -6.3 -4.68645 | CATCTAAAATCAAAA TGTCTGG TTTC CCAAACA AAGCTTGTCCCAAAA TERM 1922 1634545 - 1634523 - R 85 -4.8 -5.58522 | overlap 1634527 TAGACAAAAGAAAAA GAGGCAAAAC AAT GTCTTGTCCC AATTTCTACCAGTCT PEPE_1650 1636675 - 1634738 - | peptide ABC transporter ATPase TERM 1923 1635712 - 1635722 + g 75 -6.8 -4.43755 | TGTTTGATAGATCTG CGGT TTC ACCG TTTTCCATTTGTTCT PEPE_1651 1639409 - 1636704 - | cation transport ATPase TERM 1924 1639037 - 1639013 - G 78 -9.3 -3.63515 | opp_overlap 1639013 1639018 GTCCATCCCGAATAA CAGTCGCTTCA ATT TGAAGCATCTG TTTAATTTTGTCAAT TERM 1925 1639013 - 1639037 + g 76 -7.1 -4.27483 | opp_overlap 1639013, overlap 1639018 GTCCATCCCGAATAA CAGTCGCTTCA ATT TGAAGCATCTG TTTAATTTTGTCAAT TERM 1926 1639590 - 1639569 - R 81 -4.4 -5.41143 | TATTTTTCAAAAAAA GCCATGAC TTTCAG GCCATGAC TTTCAATTTTAGTTT PEPE_1652 1640258 - 1639605 - | glycine betaine/carnitine/choline ABC transporter, ATP-binding protein PEPE_1653 1641184 - 1640258 - | periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) PEPE_1654 1641817 - 1641185 - | glycine betaine/carnitine/choline ABC transporter, permease protein TERM 1927 1641806 - 1641831 + g 70 -4.7 -4.58297 | opp_overlap 1641809, overlap 1641809 TCCATATTGATTCAG GAAGTTGATCA TTAT TGATCACCATC TTTCTCTTTTTGCTC PEPE_1655 1643010 - 1641817 - | ABC-type proline/glycine betaine transport system, ATPase component TERM 1928 1642666 - 1642678 + g 70 -4.8 -4.63486 | AATCATTTCTTTAGC GCGT TCGTT ACGC TTTTCTTCAGACCAT TERM 1929 1642944 - 1642966 + g 70 -7.8 -3.55563 | opp_overlap 1642948, overlap 1642948 TTTCTACATCCAGAT TAAAGTCGTC AAC GACCACTTTA TTTCCAGGATAAACT PEPE_1656 1643237 - 1644478 + | peptidase T TERM 1930 1644487 - 1644514 + F 80 -5.6 -5.14563 | gap 1, opp_overlap 1644490, overlap 1644511 TAACTAATTTTTTAA GGACTGTGACAAC CTA GTTGT-GCAGCCC TTTTTTAATAAAAAG PEPE_1657 1644540 - 1645580 + | dehydrogenase related protein TERM 1931 1645587 - 1645616 + T 100 -10.9 -5.01042 | opp_overlap 1645587 TTGAAATAAAAAAAA CCATTAAACGATA AATG TTTCGTTTAATGG TTTTTACTTTACATT TERM 1932 1645616 - 1645587 - T 100 -10.9 -6.23545 | opp_overlap 1645587 TTGAAATAAAAAAAA CCATTAAACGATA AATG TTTCGTTTAATGG TTTTTACTTTACATT PEPE_1658 1647442 - 1645664 - | ABC-type multidrug transport system, ATPase and permease component PEPE_1659 1648044 - 1647445 - | transcriptional regulator TERM 1933 1648176 - 1648216 + r 74 -6.9 -4.20136 | opp_overlap 1648177, overlap 1648177 TTTAATGCACAAAAA ACTCTCAATTCTACTCGGT TAC ACCCCGTAAAATTGAGAGC TTTAATTTTAAAACT TERM 1934 1648215 - 1648177 - R 100 -12.6 -5.31456 | opp_overlap 1648176 1648177 TTAATGCACAAAAAA CTCTCAATTCTACTCGGT TAC ACCCCGTAAAATTGAGAG CTTTAATTTTAAAAC TERM 1935 1648177 - 1648215 + r 83 -10.4 -3.11359 | opp_overlap 1648177, overlap 1648176 TTAATGCACAAAAAA CTCTCAATTCTACTCGGT TAC ACCCCGTAAAATTGAGAG CTTTAATTTTAAAAC PEPE_1660 1648640 - 1648272 - | hypothetical protein PEPE_1661 1649206 - 1648643 - | dihydroxyacetone kinase PEPE_1662 1650225 - 1649233 - | dihydroxyacetone kinase TERM 1936 1650755 - 1650738 - g 78 -3.5 -5.48825 | gap 1, opp_overlap 1650738 CACTATCCAAAAAAA TCTGCTTT CTC AAAGC-GA TATTAAACTCATTAA PEPE_1663 1650373 - 1651083 + | RelA_SpoT domain-containing protein TERM 1937 1651234 - 1651211 - g 70 -7.5 -3.65353 | opp_overlap 1651205 GGAAAGTATCTGAAA CTCGGTCAA TTATTT TTAACCGAG AATAATTTACTAGTG PEPE_1664 1651073 - 1651384 + | hypothetical protein TERM 1938 1651843 - 1651859 + G 75 -9.5 -3.33815 | CCTAGAACCTGATGC CCAACAA CGC TTGTTGG TTGCTTACCAGCAAT TERM 1939 1651960 - 1651943 - g 70 -2.7 -5.02439 | ACAGAATTACAAAAA CGGAT TGAGCAAC ATCCG CCACATTCTGAGCAG PEPE_1665 1651388 - 1652071 + | putative NADPH-quinone reductase PEPE_1666 1652071 - 1652235 + | hypothetical protein TERM 1940 1652316 - 1652289 - T 100 -11.4 -5.1675 | opp_overlap 1652289 TTAGGCATCAAAAAA GACCATGACATT GTTA ATTGTCATGGTC TTTTAAGGTTTAGTG TERM 1941 1652289 - 1652316 + T 100 -11.4 -4.25074 | opp_overlap 1652289 TTAGGCATCAAAAAA GACCATGACATT GTTA ATTGTCATGGTC TTTTAAGGTTTAGTG PEPE_1667 1652736 - 1652326 - | hypothetical protein TERM 1942 1652445 - 1652459 + g 91 -8.6 -5.11112 | TGTTGGTCATCTCGT TCACTG CCG CAGTGA TTTTTGTTACCATTT PEPE_1668 1653185 - 1652769 - | hypothetical protein PEPE_1669 1653300 - 1653172 - | hypothetical protein PEPE_1670 1653510 - 1653313 - | hypothetical protein PEPE_1671 1654072 - 1653527 - | hypothetical protein PEPE_1672 1654337 - 1654083 - | hypothetical protein TERM 1943 1654505 - 1654522 + r 80 -7.7 -4.27584 | gap 1, opp_overlap 1654505 AAAATAGCAAAAAAA GCCCACGC TAT GC-TGGGC TTTTCGGTTAGAACT TERM 1944 1654522 - 1654505 - R 100 -7.7 -5.69023 | gap 1, opp_overlap 1654505 AAAATAGCAAAAAAA GCCCACGC TAT GC-TGGGC TTTTCGGTTAGAACT PEPE_1673 1654723 - 1654604 - | hypothetical protein PEPE_1674 1654842 - 1655651 + | HAD superfamily hydrolase PEPE_1675 1656453 - 1655713 - | orotidine-5'-phosphate decarboxylase PEPE_1676 1656643 - 1657053 + | peptide deformylase TERM 1945 1657064 - 1657081 + T 84 -5.6 -5.42514 | TTTAGTTTTGGAGAG CTAGCA TTAATT TGCTAG TTTTTTAATTTATCA PEPE_1677 1657661 - 1657146 - | spermine/spermidine N-acetyltransferase PEPE_1678 1658124 - 1657672 - | MarR family transcriptional regulator TERM 1946 1657741 - 1657760 + g 78 -10.8 -2.53263 | TCGTTCAACTTTCTC CAGCATTG CTTT CAATGCTG TAGCTTCCGCGTCCG TERM 1947 1658154 - 1658181 + r 77 -4.3 -5.30155 | opp_overlap 1658161 1658174, overlap 1658174 GAGAGTATTTTACTT TAATTTAGTTG CAAATA CAACAAAATTA TTTTTTGATTGCTCG PEPE_1679 1658814 - 1658179 - | TetR family transcriptional regulator PEPE_1680 1659960 - 1658818 - | ABC-type multidrug transport system, permease component TERM 1948 1658873 - 1658859 - G 70 -5.8 -4.26019 | overlap 1658850 CAACGATATTTAAAA TAGTTA AGA TAACTA GAAAAATTAATAACA PEPE_1681 1660682 - 1659960 - | ABC-type multidrug transport system, ATPase component TERM 1949 1661091 - 1661063 - R 100 -8.9 -5.34309 | opp_overlap 1661057 1661063 ATTAGTAAATAAAAA GACAGTTACCTCA GAT TGAGACAGCTGTC TTACTATTTTATTCG PEPE_1682 1661417 - 1661100 - | gamma-carboxymuconolactone decarboxylase subunit-like protein PEPE_1683 1661833 - 1661417 - | double-stranded beta-helix-like protein TERM 1950 1661748 - 1661762 + g 70 -7.2 -3.71913 | opp_overlap 1661748, overlap 1661746 AGCCCCTGTAGATAA CTTTGT CCT ACAAAG TATTTTGCGTATGCA TERM 1951 1661794 - 1661810 + g 88 -6.5 -5.2189 | CATTTTTAGGTCCAG CGGGG AAAATAA CCCCG TTTTTTACTGCTTCA PEPE_1684 1662320 - 1661850 - | flavodoxin TERM 1952 1662249 - 1662259 + g 72 -5.4 -4.62069 | opp_overlap 1662249, overlap 1662234 TGTTGGTAAATTTAA TTGC CCA GCAA TTTTTCGCATCAGAA PEPE_1685 1663300 - 1662416 - | LysR family transcriptional regulator PEPE_1686 1663367 - 1663894 + | acetyltransferase PEPE_1687 1663945 - 1664007 + | hypothetical protein PEPE_1688 1664029 - 1665204 + | major facilitator superfamily permease TERM 1953 1665249 - 1665221 - T 100 -13.3 -5.1417 | opp_overlap 1665221 CCATAAAATCAAAAA GACGCTTCTAATT TTA ATTTAGAAGCGTC TTTTTCGGTCATCTT TERM 1954 1665221 - 1665249 + T 100 -13.3 -4.70266 | opp_overlap 1665221 CCATAAAATCAAAAA GACGCTTCTAATT TTA ATTTAGAAGCGTC TTTTTCGGTCATCTT PEPE_1689 1665529 - 1665263 - | hypothetical protein PEPE_1690 1666380 - 1665550 - | PP family ATPase TERM 1955 1665799 - 1665820 + g 81 -9.5 -3.91144 | overlap 1665786 TCCAGCAAATACGTT GTTTACTGC TTCT GCAGTAAGC TTTGTACCATATGGG TERM 1956 1666344 - 1666354 + g 73 -2.6 -5.19998 | TTGATGCTAAATCCT TAAT TAA ATTA TTTTCTTTTGCTTCT PEPE_1691 1667125 - 1666412 - | glycerol uptake facilitator related permease (major Intrinsic protein family) PEPE_1692 1668398 - 1667151 - | hypothetical protein TERM 1957 1667246 - 1667267 + g 75 -3.1 -5.30155 | overlap 1667248 ATTCTGGTTTAAATT TTTCAATAT CTTG ATATTGATA TTTTTTAATTCGTAA PEPE_1693 1669144 - 1668404 - | NCAIR mutase (PurE)-related protein PEPE_1694 1670441 - 1669167 - | hypothetical protein PEPE_1695 1670612 - 1671265 + | cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase PEPE_1696 1671286 - 1672293 + | high-affinity nickel permease TERM 1958 1672328 - 1672297 - T 100 -17.6 -4.88736 | opp_overlap 1672297 1672301, overlap 1672301 CAGCACGCATAAAAA GAAACAGCATTTCA ACTG TGAAATGCTGTTTC TTTTTGGACTAATTC TERM 1959 1672297 - 1672328 + T 100 -17.6 -4.64598 | opp_overlap 1672297 1672301, overlap 1672301 CAGCACGCATAAAAA GAAACAGCATTTCA ACTG TGAAATGCTGTTTC TTTTTGGACTAATTC TERM 1960 1672301 - 1672324 + T 100 -12.6 -4.87389 | opp_overlap 1672301 1672297, overlap 1672297 ACGCATAAAAAGAAA CAGCATTTCA ACTG TGAAATGCTG TTTCTTTTTGGACTA TERM 1961 1672324 - 1672301 - T 100 -12.6 -4.97405 | opp_overlap 1672297 1672301, overlap 1672297 ACGCATAAAAAGAAA CAGCATTTCA ACTG TGAAATGCTG TTTCTTTTTGGACTA TERM 1962 1672382 - 1672360 - T 93 -7 -5.48063 | AGTGAATACAAAAAA CACGTTCCTA ATA TCAGAACGTG TTACAAACTTTTTAA PEPE_1697 1673298 - 1672414 - | ribose transport protein PEPE_1698 1673731 - 1673336 - | D-ribose pyranase PEPE_1699 1674652 - 1673744 - | ribokinase family sugar kinase TERM 1963 1674710 - 1674696 - R 74 -7.2 -4.08767 | opp_overlap 1674696 TTTACTTGTTTAAAA CGTTTT ATG AAAACG TTTTAATAGCATATC TERM 1964 1674696 - 1674710 + r 76 -7.2 -4.27617 | opp_overlap 1674696 TTTACTTGTTTAAAA CGTTTT ATG AAAACG TTTTAATAGCATATC PEPE_1700 1675747 - 1674749 - | LacI family transcription regulator TERM 1965 1675066 - 1675041 - G 77 -10.5 -3.03007 | AATATTCCGGTAACA TCCGTTGCTAA AATT TTAGCAACGGC TTCCCGACCACCAAT TERM 1966 1675177 - 1675194 + g 70 -2.7 -5.15634 | TTTCAGGTGCATTAG TTGGCAT GACT ATGGCAA TTTTTTGATGCCCTA TERM 1967 1675837 - 1675813 - R 100 -8 -5.84432 | opp_overlap 1675813 1675811 CATAAGATAAAAAAA TACCCATTTC GTTTA GAAATGAGTA TCTTTGAAACAAATT PEPE_1701 1677239 - 1675896 - | manganese transporter NRAMP TERM 1968 1677134 - 1677123 - G 79 -5.8 -4.87893 | AACCGCAATTAAAAA TCCG GGTC CGGA GTACGCCATCAGCGT TERM 1969 1677342 - 1677305 - R 85 -8 -4.46212 | opp_overlap 1677340, overlap 1677335 CTCTCCACCATAAAA TTGATCCATTTTTATA AGAAAG CAAAAAAATGGATCAA TCCACCAATGAATTG TERM 1970 1677346 - 1677335 - R 87 -4.4 -5.77856 | opp_overlap 1677340, overlap 1677305 AAGAAAGCAAAAAAA TGGA TCAA TCCA CCAATGAATTGTTAG TERM 1971 1677881 - 1677913 + r 85 -10.8 -3.37017 | opp_overlap 1677881 TAAAGTACTAAAAAA GCTGAAAATCACAA TTCAC TTGTCATTTTCAGC TTACTCTTAAACATT TERM 1972 1677913 - 1677881 - R 100 -10.8 -5.243 | opp_overlap 1677881 TAAAGTACTAAAAAA GCTGAAAATCACAA TTCAC TTGTCATTTTCAGC TTACTCTTAAACATT PEPE_1702 1679773 - 1677920 - | hypothetical protein PEPE_1703 1681763 - 1679802 - | glycosyltransferase PEPE_1704 1682838 - 1681741 - | glycosyltransferase-like protein TERM 1973 1682812 - 1682827 + g 70 -6.2 -4.23218 | opp_overlap 1682811 GTCCGGATTTAAAGC TGGAAT CAAA ATTCCA TATTTTTTCATAATT PEPE_1705 1683216 - 1683824 + | fructose-2,6-bisphosphatase TERM 1974 1683866 - 1683829 - T 100 -10 -5.41359 | opp_overlap 1683829 1683830, overlap 1683830 AATTAAATTAAAAAA CGGATTGAAGCCTCCA ACATCA TGAAGGTTTCAATCCA TTTTTTATTTACACA TERM 1975 1683829 - 1683866 + T 100 -7.8 -5.63517 | opp_overlap 1683829 1683830, overlap 1683830 AATTAAATTAAAAAA CGGATTGAAGCCTCCA ACATCA TGAAGGTTTCAATCCA TTTTTTATTTACACA TERM 1976 1683865 - 1683830 - T 95 -11.3 -3.82375 | opp_overlap 1683829 1683830, overlap 1683829 ATTAAATTAAAAAAC GGATTGAAGCCTCCA ACATCA TGAAGGTTTCAATCC ATTTTTTATTTACAC TERM 1977 1683830 - 1683865 + T 100 -11.3 -3.97026 | opp_overlap 1683830 1683829, overlap 1683829 ATTAAATTAAAAAAC GGATTGAAGCCTCCA ACATCA TGAAGGTTTCAATCC ATTTTTTATTTACAC PEPE_1706 1684528 - 1683875 - | hypothetical protein PEPE_1707 1685224 - 1684664 - | site-specific recombinase, DNA invertase Pin related proteins TERM 1978 1685245 - 1685262 + r 75 -4.9 -5.07567 | opp_overlap 1685228, overlap 1685243 1685247 1685261 AAACCTCCTAGATTT TAGACAT CTAA ATGTCTG TTTTTTAGGGTGTAC TERM 1979 1685261 - 1685289 + r 71 -8.4 -3.27907 | gap 1, overlap 1685245 AGACATCTAAATGTC TG-TTTTTTAGGG TGTA CCCTAAAAAAGCA TTGCATTATATATGA TERM 1980 1685430 - 1685483 + r 100 -17.1 -2.78354 | opp_overlap 1685439, overlap 1685439 ATCTACATCCTGATT CAATAAAAATAGGGTTACGACATAT TTAA ATACGTCGTAACCCTATTTATTTTG TAAATTTGTTAATTA TERM 1981 1685474 - 1685439 - R 100 -18.6 -5.10461 | opp_overlap 1685430 1685439 CTGATTCAATAAAAA TAGGGTTACGACATAT TTAA ATACGTCGTAACCCTA TTTATTTTGTAAATT TERM 1982 1685439 - 1685474 + r 100 -16.4 -4.79683 | opp_overlap 1685439, overlap 1685430 CTGATTCAATAAAAA TAGGGTTACGACATAT TTAA ATACGTCGTAACCCTA TTTATTTTGTAAATT PEPE_1708 1686128 - 1685496 - | nucleoside-diphosphate-sugar epimerase PEPE_1709 1686942 - 1686256 - | Solo B3/4 domain-containing protein TERM 1983 1686704 - 1686687 - G 86 -11.3 -4.08394 | ACACGCGTTTCAAAA GGGCTTC AATT GAAGCCC GCGCCCCTTTTTTCT TERM 1984 1687028 - 1687052 + r 70 -7.2 -3.6849 | opp_overlap 1687028 TTAGCAAACAAAAAA GTCCCAATTC AAACC GAATTGAGAC TTCTTGAACTTAACT TERM 1985 1687052 - 1687028 - R 100 -10.1 -5.68438 | opp_overlap 1687028 TTAGCAAACAAAAAA GTCCCAATTCA AAC CGAATTGAGAC TTCTTGAACTTAACT TERM 1986 1687060 - 1687081 + r 70 -4.5 -4.84353 | overlap 1687061 ATTGAGACTTCTTGA ACTTAACTA AAAT TAGTTAAGC TTTGTTTTGCTTTGT TERM 1987 1687061 - 1687080 + r 73 -8 -3.48172 | overlap 1687060 TTGAGACTTCTTGAA CTTAACTA AAAT TAGTTAAG CTTTGTTTTGCTTTG PEPE_1710 1687761 - 1687072 - | phosphoglycerate mutase TERM 1988 1687422 - 1687407 - G 72 -9 -3.36505 | overlap 1687418 ATAGTGGAGGGAGAA CGTCGT ATGA ACGACG CCATGTGTGAACTTG PEPE_1711 1688788 - 1687883 - | lipoprotein PEPE_1712 1688944 - 1690119 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 1989 1690164 - 1690125 - T 100 -9.4 -6.20267 | opp_overlap 1690125 TGAAAAATAAAAAAA GATTCATGCCGAAGACAA TAGT TAGCCTTCAGTATGAATC TTTTTTGTATTAATC TERM 1990 1690125 - 1690164 + T 100 -7.2 -5.49569 | opp_overlap 1690125 TGAAAAATAAAAAAA GATTCATGCCGAAGACAA TAGT TAGCCTTCAGTATGAATC TTTTTTGTATTAATC TERM 1991 1690206 - 1690231 + T 100 -12.7 -3.68265 | opp_overlap 1690206 AAGCTATATAAAAAA CACGCTCATTT CAAC GAATGAGCGTG TTTAAAATTGCATTT TERM 1992 1690231 - 1690206 - T 100 -12 -5.38951 | opp_overlap 1690206 AAGCTATATAAAAAA CACGCTCATT TCAACG AATGAGCGTG TTTAAAATTGCATTT PEPE_1713 1690593 - 1690261 - | hypothetical protein PEPE_1714 1691402 - 1690614 - | branched-chain amino acid permease (azaleucine resistance) PEPE_1715 1692790 - 1691534 - | D-alanyl-D-alanine carboxypeptidase PEPE_1716 1694107 - 1692971 - | Signal transduction histidine kinase PEPE_1717 1694808 - 1694119 - | DNA-binding response regulator PEPE_1718 1695388 - 1694891 - | methylated DNA-protein cysteine methyltransferase TERM 1993 1695473 - 1695440 - R 100 -14.1 -6.09196 | opp_overlap 1695440 1695445 1695469 CGTAAAATAAAAAAA GTTAATAGCCAAGGA CGAA TCCTTGACCATTAAC TCTTAAAGTTTTTAA TERM 1994 1695440 - 1695473 + r 76 -9.7 -3.17553 | opp_overlap 1695440, overlap 1695445 1695469 CGTAAAATAAAAAAA GTTAATAGCCAAGGA CGAA TCCTTGACCATTAAC TCTTAAAGTTTTTAA TERM 1995 1695490 - 1695510 + r 71 -5.6 -4.59293 | opp_overlap 1695492 CTTAAAGTTTTTAAT TATTCAAT ACCAA ATTGAATA TTTATTTACTATTTA PEPE_1719 1696661 - 1695519 - | inosine-5'-monophosphate dehydrogenase TERM 1996 1695599 - 1695611 + g 72 -5.5 -4.58283 | overlap 1695588 CAGCGTTCGTAATTT GCACG AAC TGTGC TTTTTCAGCCAATTC PEPE_1720 1697387 - 1696683 - | hypothetical protein PEPE_1721 1698522 - 1697416 - | GTPase, translation factor TERM 1997 1698365 - 1698412 + g 81 -11.4 -2.57132 | overlap 1698364 ATAATTTCTTGAATC CGATCTAAACGTTGATCTGGTA CTTC TACCATCCCGACGTTTGGATCG ATTGTAGCAAACGGA PEPE_1722 1698924 - 1698739 - | hypothetical protein PEPE_1723 1699789 - 1698938 - | chromosome segregation DNA-binding protein TERM 1998 1699827 - 1699840 + r 75 -8.1 -3.67564 | overlap 1699835 CCAATTGGATCTTTA CCTGG TGTT CCAGG TTTACGTGGATACTT PEPE_1724 1700533 - 1699802 - | cell division SAM-dependent methyltransferase PEPE_1725 1700667 - 1701140 + | acetyltransferase TERM 1999 1701145 - 1701194 + T 87 -7.5 -4.84642 | gap 2, opp_overlap 1701146, overlap 1701146 TAAAGGTTTAAAAAA ATCCCATGATGATT-G-GCTTAG GAAAAA CTAAGCTTTAATCATCATGGGAC TTTTATTCATTTAAA TERM 2000 1701193 - 1701146 - T 100 -8.8 -5.4477 | gap 2, opp_overlap 1701145 1701146 AAAGGTTTAAAAAAA TCCCATGATGATT--GGCTTAG GAAAAA CTAAGCTTTAATCATCATGGGA CTTTTATTCATTTAA TERM 2001 1701146 - 1701193 + T 87 -11 -3.497 | gap 2, opp_overlap 1701146, overlap 1701145 AAAGGTTTAAAAAAA TCCCATGATGATT-G-GCTTAG GAAAAA CTAAGCTTTAATCATCATGGGA CTTTTATTCATTTAA PEPE_1726 1702124 - 1701210 - | ribonucleoside hydrolase RihC TERM 2002 1702195 - 1702175 - R 91 -8.3 -5.06451 | opp_overlap 1702175 TACCATTCTAAAAAA GAATGCACG TTA CGTCCATTC TTTTTCACTATCTAT TERM 2003 1702175 - 1702195 + r 85 -8.3 -4.73448 | opp_overlap 1702175 TACCATTCTAAAAAA GAATGCACG TTA CGTCCATTC TTTTTCACTATCTAT PEPE_1727 1703511 - 1702243 - | nucleoside permease PEPE_1728 1706026 - 1703675 - | Rad3-related DNA helicase TERM 2004 1704135 - 1704176 + g 74 -8.9 -3.65351 | overlap 1704123 1704128 1704140 GTTTGCAGTTGAACT TCAATTTCAGGATGCATTT CCTG AAATGCATCCGCAATTTGA TTTAAATAGGCATAG TERM 2005 1704140 - 1704171 + g 73 -7.4 -4.08485 | overlap 1704135 CAGTTGAACTTCAAT TTCAGGATGCATTT CCTG AAATGCATCCGCAA TTTGATTTAAATAGG TERM 2006 1704437 - 1704427 - G 72 -2.4 -5.20781 | overlap 1704429 TAGCAGAAAAGAAAA TCGC CCC GCGT CCCTTTTTTAATGAA PEPE_1729 1706136 - 1706645 + | cell wall-associated hydrolase TERM 2007 1706691 - 1706655 - T 95 -10.6 -4.2528 | gap 1, opp_overlap 1706664, overlap 1706664 GGGTAATTGAATAAA TAA-AAAAAAGAATTCC AGCT GGAATTCTTTTTTATTA ACCAAAATGACGCTT TERM 2008 1706681 - 1706664 - T 100 -8.5 -6.32017 | opp_overlap 1706664, overlap 1706655 AATAAATAAAAAAAA GAATTCC AGCT GGAATTC TTTTTTATTAACCAA TERM 2009 1706664 - 1706681 + T 100 -8.5 -5.4505 | opp_overlap 1706655 1706664 AATAAATAAAAAAAA GAATTCC AGCT GGAATTC TTTTTTATTAACCAA PEPE_1730 1707216 - 1706689 - | hypothetical protein PEPE_1731 1708509 - 1707292 - | major facilitator superfamily permease TERM 2010 1708076 - 1708032 - G 76 -7.3 -4.27519 | opp_overlap 1708033, overlap 1708036 ATTGGACAATAGAAA GTAATGCTCCTCCAATAATTG GCG CAATAATTGGAAAAGCACCAT TTACCGCCATTAACA TERM 2011 1708072 - 1708036 - G 95 -12.5 -3.70947 | opp_overlap 1708033, overlap 1708032 GACAATAGAAAGTAA TGCTCCTCCAATAATTG GCG CAATAATTGGAAAAGCA CCATTTACCGCCATT PEPE_1732 1708637 - 1710112 + | tRNA (uracil-5-)-methyltransferase related enzyme PEPE_1733 1710759 - 1710184 - | DNA-binding response regulator PEPE_1734 1711910 - 1710795 - | Signal transduction histidine kinase PEPE_1735 1712652 - 1711903 - | ABC-type multidrug transport system, permease component PEPE_1736 1713526 - 1712636 - | ABC-type multidrug transport system, ATPase component TERM 2012 1712769 - 1712781 + g 93 -4.9 -5.67711 | AACGTTGCATCTCCA TTAGT GCT ACTAA TTTTTATTTTATTTC TERM 2013 1713612 - 1713597 - H 84 -6.2 -5.14563 | opp_overlap 1713597 1713596 1713599 CTTGTCACCAAAAAA TATGAC AAAT GTCATA CTTTCTAAGAACTTC PEPE_1737 1713727 - 1714344 + | hypothetical protein PEPE_1738 1714403 - 1714612 + | hypothetical protein TERM 2014 1714654 - 1714665 + G 77 -5.8 -4.73092 | overlap 1714655 TTTGAAAACTGCTGA CGTC AAAA GACG TTTCTTTTGGCTTGT TERM 2015 1714655 - 1714676 + G 71 -8.1 -3.52307 | overlap 1714654 TTGAAAACTGCTGAC GTCAAAAGA CGTT TCTTTTGGC TTGTCATATCTATTA PEPE_1739 1714640 - 1715368 + | hypothetical protein PEPE_1740 1717354 - 1715420 - | acyltransferase TERM 2016 1716020 - 1716032 + g 84 -6.3 -5.18726 | overlap 1716013 TTCCTTTTGTTTTTC CAAAG CTT CTTTG TTTTTCTTGTCGGCC TERM 2017 1717165 - 1717150 - G 77 -6.2 -4.83169 | ATTCTTGTATAAAAA TATCTG TAAT CAGATA ACCCGAAACGGCAAA PEPE_1741 1717673 - 1718236 + | Rossmann fold nucleotide-binding protein TERM 2018 1718245 - 1718259 + T 100 -7.1 -5.60993 | ATATTAACCCGATGA TGCGC ATCTA GCGCA TTTTTTTGTACAAAA PEPE_1742 1718568 - 1718278 - | hypothetical protein PEPE_1743 1718728 - 1719486 + | peptide ABC transporter ATPase PEPE_1744 1719498 - 1721309 + | peptide ABC transporter permease TERM 2019 1721348 - 1721307 - T 100 -11.1 -4.85782 | opp_overlap 1721317, overlap 1721317 TTGCCTAAAAAGAAA TAAATAAAAAGGTGAACCC ATAG AGGTTCACCTTTTTTTATA TCCTAGTATTCAATT TERM 2020 1721338 - 1721317 - T 100 -10.9 -5.56573 | opp_overlap 1721317, overlap 1721307 AGAAATAAATAAAAA GGTGAACCC ATAG AGGTTCACC TTTTTTTATATCCTA TERM 2021 1721317 - 1721338 + T 100 -10.2 -5.74122 | opp_overlap 1721307 1721317 AGAAATAAATAAAAA GGTGAACC CATAGA GGTTCACC TTTTTTTATATCCTA PEPE_1745 1722660 - 1721362 - | D-serine dehydratase TERM 2022 1721578 - 1721594 + g 75 -8.1 -3.77666 | AACATTCTTCATCAT CTTTTGA TCA TCAAAAG TTTGAATTCCATATA PEPE_1746 1723355 - 1722732 - | DNA-3-methyladenine glycosylase III TERM 2023 1723765 - 1723747 - g 89 -6 -5.63103 | TTTTAACGAAAAAAA CGTAGC CATGAGT GCTACG GAAAGTGTTTACGGT PEPE_1747 1723472 - 1724890 + | dipeptidase A TERM 2024 1724900 - 1724935 + T 100 -17.9 -5.86976 | opp_overlap 1724900 CTCTAATATTAAAAA TGATGAACGCTAAAC CTTAAA GTTTAGCGTTCATCA TTTTTTGTTTTATAA TERM 2025 1724935 - 1724900 - T 100 -18.6 -4.87626 | opp_overlap 1724900 CTCTAATATTAAAAA TGATGAACGCTAAACC TTAA AGTTTAGCGTTCATCA TTTTTTGTTTTATAA PEPE_1748 1725835 - 1724945 - | Beta-lactamase class A TERM 2026 1725980 - 1726012 + r 89 -7.8 -5.03314 | opp_overlap 1725980 GAAAAAACAAAAAAA CTGGAATAAGCATA ATTAA TACGCTTACTCCAG TTTTTTAAAGGTGAA TERM 2027 1726012 - 1725980 - R 100 -12.2 -6.28401 | opp_overlap 1725980 GAAAAAACAAAAAAA CTGGAATAAGCATA ATTAA TACGCTTACTCCAG TTTTTTAAAGGTGAA PEPE_1749 1726258 - 1726046 - | hypothetical protein PEPE_1750 1726673 - 1726449 - | hypothetical protein PEPE_1751 1726945 - 1726736 - | hypothetical protein PEPE_1752 1727194 - 1727463 + | hypothetical protein TERM 2028 1727577 - 1727587 + F 76 -5.4 -5.08088 | AATTTGAGTTTAAGT GGTT GGC AACC TTTTTATTGAAACTT TERM 2029 1727671 - 1727642 - f 74 -7.9 -3.8253 | opp_overlap 1727642, overlap 1727645 AAAGAAATTTAACAA CATCACCATGTTT GTTT AAACACGGCGCTG GTTATGGAGGAAAAT PEPE_1753 1727688 - 1728140 + | transcriptional regulator TERM 2030 1728424 - 1728447 + T 100 -7.5 -5.9003 | opp_overlap 1728422 1728424 CTTCTTACCCAAAGA GTGGATCTG CTTCCC CAGATCTAC TTTTTTTGTTGCTTT TERM 2031 1728690 - 1728731 + T 72 -8.8 -2.99874 | opp_overlap 1728682 1728694 1728698, overlap 1728698 CGTAATATTCTTACC CAAAGAAACACCCATCTA CTTCCC TAGAGGGGTGTTTCACTG TCTCTACTGCTTTAT TERM 2032 1728727 - 1728694 - T 95 -12.6 -3.65529 | opp_overlap 1728690 1728698, overlap 1728682 1728698 ATATTCTTACCCAAA GAAACACCCATCTA CTTCCC TAGAGGGGTGTTTC ACTGTCTCTACTGCT TERM 2033 1728698 - 1728723 + T 73 -7.6 -3.75535 | opp_overlap 1728694 1728698, overlap 1728690 TCTTACCCAAAGAAA CACCCATCTA CTTCCC TAGAGGGGTG TTTCACTGTCTCTAC TERM 2034 1728723 - 1728698 - T 82 -7.6 -4.46112 | opp_overlap 1728698 1728690, overlap 1728694 TCTTACCCAAAGAAA CACCCATCTA CTTCCC TAGAGGGGTG TTTCACTGTCTCTAC TERM 2035 1728879 - 1728844 - T 100 -10.5 -5.04356 | opp_overlap 1728844 CTAAACAATCAAAAA GACGTAGAAGAGGTT TGGGTT ATCCTCTACTACGTC TTTGTAATAATTATT TERM 2036 1728844 - 1728879 + T 91 -10.5 -4.03696 | opp_overlap 1728844 CTAAACAATCAAAAA GACGTAGAAGAGGTT TGGGTT ATCCTCTACTACGTC TTTGTAATAATTATT PEPE_1754 1730038 - 1728893 - | N-acetylglucosamine 6-phosphate deacetylase PEPE_1755 1731225 - 1730050 - | phosphosugar isomerase PEPE_1756 1731983 - 1731249 - | GntR family transcriptional regulator PEPE_1757 1732887 - 1732063 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID PEPE_1758 1733788 - 1732871 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC TERM 2037 1732916 - 1732928 + g 71 -4.1 -4.94962 | CTGTTCATCTAAATC TGTTG CAC CAGCA TTTTGTTTAGGTTGT TERM 2038 1733788 - 1733806 + r 77 -4.6 -5.21709 | opp_overlap 1733788 CAATACCTGAACCCA TAAGAACG CCT CCTTCTTA TTTTTTAGTATCAAA PEPE_1759 1734298 - 1733804 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB PEPE_1760 1736350 - 1734326 - | hypothetical protein PEPE_1761 1736751 - 1736356 - | phosphotransferase system, mannose/fructose-specific component IIA TERM 2039 1737075 - 1737053 - R 95 -5.7 -5.84381 | opp_overlap 1737053, overlap 1737045 TTAGTAATAAAAAAA CTTTGATTT TTTAC AAACCAAAG TTTCGATTATATTAA PEPE_1762 1738590 - 1737082 - | hypothetical protein PEPE_1763 1739552 - 1738674 - | galactose mutarotase-like protein TERM 2040 1739042 - 1739026 - G 74 -8.7 -3.55444 | GTTCCATCGCGGAAA GGAATGG GGC CCACTCC GAGTCTTTTAATTTG TERM 2041 1739246 - 1739256 + g 74 -5.4 -4.69559 | GGGTAAAATCAAATG GGAA CAT TTCC TTTGTTTTAGCATTT PEPE_1764 1739809 - 1740315 + | hypothetical protein PEPE_1765 1740430 - 1740906 + | hypothetical protein TERM 2042 1740939 - 1740911 - T 100 -17.7 -5.1861 | opp_overlap 1740911 TTGACGACTAAAAAA GCTGAATCAAGAA AAG TTCTTGATTCAGC TTTTTATAGTACCTG TERM 2043 1740911 - 1740939 + T 100 -17.7 -4.9218 | opp_overlap 1740911 TTGACGACTAAAAAA GCTGAATCAAGAA AAG TTCTTGATTCAGC TTTTTATAGTACCTG PEPE_1766 1742016 - 1740979 - | NADPH:quinone reductase related Zn-dependent oxidoreductase PEPE_1767 1742561 - 1742133 - | BadM/Rrf2 family transcriptional regulator PEPE_1768 1743422 - 1742571 - | nucleoside-diphosphate-sugar epimerase TERM 2044 1743549 - 1743513 - R 100 -6.1 -5.7946 | opp_overlap 1743513 GTTTGAACAAAAAAA CTCAATTATCTTGAA GTTAATA TTCAAAATAAGTGAG TTAATTTTTATTACA PEPE_1769 1743770 - 1743567 - | hypothetical protein PEPE_1770 1745320 - 1743914 - | dihydrolipoamide dehydrogenase TERM 2045 1744783 - 1744798 + g 70 -6.2 -4.27316 | opp_overlap 1744785 CACCAATAATGATGA GATGTT CTGG AACATC TTTTAAGTTCAAGGC PEPE_1771 1746612 - 1745323 - | pyruvate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component TERM 2046 1746058 - 1746070 + g 89 -10.5 -4.60977 | AGCCGGAGTAACTGG GGCGC TTG GCGCC TTTTCTGATTCTGTT PEPE_1772 1747585 - 1746605 - | pyruvate dehydrogenase (E1) component, beta subunit PEPE_1773 1748706 - 1747588 - | pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit PEPE_1774 1749704 - 1748718 - | lipoate-protein ligase TERM 2047 1749918 - 1749960 + r 100 -10.9 -5.03145 | opp_overlap 1749924, overlap 1749919 1749924 TAGCTTCGAAAGACT AAAAAACCTCAAACTAATT CTGAT AATTAGTTTGAGGTTTTGA TTTTTTGACCAATTA TERM 2048 1749919 - 1749959 + r 100 -14.4 -3.61164 | opp_overlap 1749924, overlap 1749918 1749924 AGCTTCGAAAGACTA AAAAACCTCAAACTAATT CTGAT AATTAGTTTGAGGTTTTG ATTTTTTGACCAATT TERM 2049 1749954 - 1749924 - R 100 -14.3 -5.32699 | opp_overlap 1749919 1749918 1749924 CGAAAGACTAAAAAA CCTCAAACTAATT CTGAT AATTAGTTTGAGG TTTTGATTTTTTGAC TERM 2050 1749924 - 1749954 + r 100 -14.3 -4.86862 | opp_overlap 1749924, overlap 1749919 1749918 CGAAAGACTAAAAAA CCTCAAACTAATT CTGAT AATTAGTTTGAGG TTTTGATTTTTTGAC PEPE_1775 1751316 - 1749973 - | cellobiose-specific PTS system IIC component TERM 2051 1751079 - 1751094 + g 72 -6.2 -4.39426 | CATTAACAATGGCGT TTCCAA TCAC TTGGAA TTTTGTCAGCATATC PEPE_1776 1752713 - 1751331 - | Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase TERM 2052 1751445 - 1751419 - G 91 -13.8 -2.62263 | opp_overlap 1751425, overlap 1751424 ACCCGTTTCATATCA CGTAACTCGTGG TTG CCACGATTTACG TACACCATCCCATAG TERM 2053 1751425 - 1751439 + g 80 -10 -3.6502 | opp_overlap 1751424 1751419 TTCATATCACGTAAC TCGTGG TTG CCACGA TTTACGTACACCATC TERM 2054 1752303 - 1752292 - G 70 -5.8 -4.25283 | ATTTTCTTACCAAAA CGCA CAAA TGCG TCAACCACGTGGCGA TERM 2055 1753228 - 1753214 - g 91 -7.2 -5.46706 | AGTCGAAAAGAAAAA TCTTCT ACT AGAAGA TGGTGAGACGGTCTA PEPE_1777 1752873 - 1753586 + | GntR family transcriptional regulator TERM 2056 1753592 - 1753617 + T 100 -14.9 -6.28401 | opp_overlap 1753592 ACTTGAATAAAAAAA GCGTTCAGAAA AAAT TTTCTGAACGC TTTTTTTATTTTTTA TERM 2057 1753617 - 1753592 - T 100 -14.9 -5.80364 | opp_overlap 1753592 ACTTGAATAAAAAAA GCGTTCAGAAA AAAT TTTCTGAACGC TTTTTTTATTTTTTA PEPE_1778 1754276 - 1753623 - | p-nitrobenzoate reductase TERM 2058 1753985 - 1754004 + g 79 -7.9 -4.22535 | AAACTGCTGGTATGC CATGGCT CCATTC AGCCATG TTCTTTTGAGCTTGT TERM 2059 1754361 - 1754338 - R 72 -9 -2.78816 | GCAGGTTTTAGTATA CGACTTAAAG TTTA CTTTAAGTCA AGAGTTGAAAAAGTT TERM 2060 1754516 - 1754462 - R 100 -12.4 -3.89524 | overlap 1754465 1754468 1754469 1754480 ATTTTAGCCCATAAA CCATAACGACCCCCAAAAGCTAGAGT CTT AGTCTAACTTTTGAGGGCCACTATAA AATTATGTTGTAGTT TERM 2061 1754513 - 1754465 - R 100 -14.1 -3.01918 | overlap 1754462 1754468 1754469 1754480 TTAGCCCATAAACCA TAACGACCCCCAAAAGCTAGAGT CTT AGTCTAACTTTTGAGGGCCACTA TAAAATTATGTTGTA TERM 2062 1754510 - 1754468 - R 100 -13.6 -3.64915 | overlap 1754465 1754462 1754469 1754480 GCCCATAAACCATAA CGACCCCCAAAAGCTAGAGT CTT AGTCTAACTTTTGAGGGCCA CTATAAAATTATGTT TERM 2063 1754509 - 1754469 - R 100 -14.9 -2.78467 | overlap 1754468 1754465 1754462 1754480 CCCATAAACCATAAC GACCCCCAAAAGCTAGAGT CTT AGTCTAACTTTTGAGGGCC ACTATAAAATTATGT PEPE_1779 1755169 - 1754534 - | hypothetical protein TERM 2064 1754838 - 1754823 - G 70 -7.6 -3.65902 | opp_overlap 1754822, overlap 1754827 CTTACTCCACCGAAA CTAACG GATG CGTTAG CATTCGTACCTGTGT TERM 2065 1755295 - 1755266 - R 100 -13.1 -5.31456 | opp_overlap 1755266 TTAATTTATAAAAAA TCACATTACATCA AACC TGACGTAATGTGA TTTTTAATTACCTTC TERM 2066 1755266 - 1755295 + r 100 -10.9 -4.90013 | opp_overlap 1755266 TTAATTTATAAAAAA TCACATTACATCA AACC TGACGTAATGTGA TTTTTAATTACCTTC PEPE_1780 1758702 - 1755310 - | hypothetical protein TERM 2067 1757180 - 1757234 + g 71 -3.9 -4.99947 | gap 2, overlap 1757175 1757183 GATGCTGGTGCTGCT TTAGTAGT-A-GTCGTTGTTTTAGCTG AAC TAGCTAAAGCACCGACATCACTCTTAA TTTTATTTAGTTGGC PEPE_1781 1759092 - 1758772 - | ArsR family transcriptional regulator PEPE_1782 1759729 - 1759184 - | BS_ykrK family protein PEPE_1783 1760570 - 1759707 - | hypothetical protein TERM 2068 1760383 - 1760409 + g 88 -10.9 -4.28361 | opp_overlap 1760395 TTAGGACTGGCCGTA GTTGGCAAAGG ATTGG CCTTAGCCAAC TTTTGATAAAATTCA TERM 2069 1760918 - 1760928 + G 72 -5.4 -4.68994 | opp_overlap 1760918 ATATTGCCAAAAAAG GAAG TCT CTTC TTTTTAAATAATCCT PEPE_1784 1760773 - 1761612 + | SAM-dependent methyltransferase TERM 2070 1761607 - 1761665 + T 100 -13.1 -3.55453 | gap 1, opp_overlap 1761619, overlap 1761619 1761661 ATTGGTGTAGTTCAT AAATA-ATAAAAAGGCTTCAATCAAT GTTAACGA ATTGATTGAAGCCTTTTTATATATTA TTAATATTTTAAATT TERM 2071 1761619 - 1761652 + T 100 -12.7 -5.1383 | opp_overlap 1761619, overlap 1761607 CATAAATAATAAAAA GGCTTCAATCAAT GTTAACGA ATTGATTGAAGCC TTTTTATATATTATT TERM 2072 1761652 - 1761619 - T 100 -12.7 -5.42164 | opp_overlap 1761607 1761619 CATAAATAATAAAAA GGCTTCAATCAAT GTTAACGA ATTGATTGAAGCC TTTTTATATATTATT PEPE_1785 1763835 - 1762030 - | hypothetical protein TERM 2073 1762954 - 1762980 + g 83 -5.3 -5.40072 | gap 1, overlap 1762955 1762956 ATGTTCCATGGGCGT CG-GGATATCAT ATTG ATGATATCCATG TTTTTTTAACCAACC TERM 2074 1762955 - 1762978 + g 73 -6.8 -4.34482 | overlap 1762954 1762956 TGTTCCATGGGCGTC GGGATATCAT ATTG ATGATATCCA TGTTTTTTTAACCAA TERM 2075 1762956 - 1762977 + g 78 -10.3 -3.19966 | overlap 1762955 1762954 GTTCCATGGGCGTCG GGATATCAT ATTG ATGATATCC ATGTTTTTTTAACCA PEPE_1786 1764598 - 1763978 - | hypothetical protein PEPE_1787 1765090 - 1764614 - | hypothetical protein TERM 2076 1765051 - 1765066 + g 76 -2.6 -5.41143 | gap 1, opp_overlap 1765051 1765052, overlap 1765051 1765052 CTAAATCGTAGAAAA G-TTCGA TCA TCGAAAC TTTTTTTAACAGCTC TERM 2077 1765147 - 1765163 + H 72 -2.4 -5.50499 | opp_overlap 1765137, overlap 1765137 GCAAATTTACCCCCG TAAATT TAGTT AATTTA TTTTTTTAAATGTAA PEPE_1788 1765244 - 1766080 + | Mn-containing catalase TERM 2078 1766119 - 1766092 - T 100 -14.4 -4.39407 | opp_overlap 1766092 1766118 TTAAATAAGCGAAAA GCGAAAAAATCA TAAC TGATTTTTTCGC TTTTTTAAGCTTTTA TERM 2079 1766092 - 1766119 + T 100 -14.4 -5.15117 | opp_overlap 1766092, overlap 1766118 TTAAATAAGCGAAAA GCGAAAAAATCA TAAC TGATTTTTTCGC TTTTTTAAGCTTTTA TERM 2080 1766118 - 1766129 + T 77 -4.4 -5.24291 | opp_overlap 1766092, overlap 1766092 ATAACTGATTTTTTC GCTT TTTT AAGC TTTTATTTTAATTTT PEPE_1789 1766857 - 1766132 - | C-di-GMP-specific phosphodiesterase PEPE_1790 1768056 - 1766854 - | Signal transduction diguanylate cyclase TERM 2081 1766880 - 1766902 + g 79 -7.8 -4.23794 | overlap 1766884 AGGCCACCTTTCCCT CAACCGTAAT ACT ATTACGTTTG TTTCTCTTAGATTGA TERM 2082 1766884 - 1766898 + g 79 -7.2 -4.68511 | overlap 1766880 CACCTTTCCCTCAAC CGTAAT ACT ATTACG TTTGTTTCTCTTAGA TERM 2083 1767213 - 1767243 + g 73 -8.4 -3.62275 | overlap 1767216 TTAAAACTTTATCTC CAACTTGATGACCG TAT TGGTCATTAAATTG TTTAAAATGATCAAT PEPE_1791 1768736 - 1770178 + | major facilitator superfamily permease TERM 2084 1770196 - 1770176 - T 71 -5.5 -4.56597 | opp_overlap 1770182 TTGCGCCGTCAAAAA TAAAAAGCT GGA AGCATTTTA GGTTGGTTAATTTCA TERM 2085 1770182 - 1770226 + T 79 -2.4 -5.86976 | gap 3, opp_overlap 1770176 CGTCAAAAATAAAAA GCTGGAAGCATTTTAGGTTGG TTAATT TCA-CCTAGA-TGCT-CCAGC TTTTTTATTTTGTAG PEPE_1792 1771481 - 1770231 - | trypsin-like serine protease TERM 2086 1771207 - 1771231 + g 70 -8.7 -3.16437 | opp_overlap 1771206 1771211, overlap 1771211 TTTCCAAAAATTGAG CTAATGATACT GTC AGAATCATTAG TATTAGCCTTTTGTA PEPE_1793 1772397 - 1771594 - | beta-lactamase superfamily hydrolase PEPE_1794 1773468 - 1772470 - | hypothetical protein PEPE_1795 1774775 - 1773480 - | hypothetical protein PEPE_1796 1776622 - 1774775 - | PAS/PAC sensor signal transduction histidine kinase PEPE_1797 1777349 - 1776648 - | DNA-binding response regulator TERM 2087 1777475 - 1777486 + r 73 -4.4 -4.97888 | ACGCTATCTGTAGCA CGAT TTAA ATCG TTTTTGCATTTTTTT TERM 2088 1777687 - 1777721 + r 83 -4.4 -5.626 | CACACGACACACTAA TCAGTAGTCACG CAGCGTAAAGC CGTGGTTACTGA TTTTTTTGTGCACTA TERM 2089 1777763 - 1777742 - R 91 -7.3 -5.14563 | opp_overlap 1777742 TTGTGCACTAAAAAA CAGTGGATA ATCT TTTCCACTG TTTTTTTCATACCTA TERM 2090 1777742 - 1777763 + r 100 -7.3 -5.53991 | opp_overlap 1777742 TTGTGCACTAAAAAA CAGTGGATA ATCT TTTCCACTG TTTTTTTCATACCTA PEPE_1799 1778164 - 1777790 - | hypothetical protein PEPE_1800 1779139 - 1778258 - | hypothetical protein TERM 2091 1778699 - 1778721 + g 75 -2 -5.4505 | GGAAGGGGCTCGCCG TTGATCAG AAAAAGC CAGATCAA TTTTTTCTTCACGCA TERM 2092 1779205 - 1779184 - R 100 -8.1 -5.56263 | opp_overlap 1779184 ATTATAAAACAAAAA GAGCTGAAA TAAA TTTCAACTC TTCCTTAAATATAAT PEPE_1801 1779816 - 1779220 - | saccharopine dehydrogenase related protein PEPE_1802 1781165 - 1779843 - | major facilitator superfamily permease TERM 2093 1781358 - 1781319 - R 84 -5.2 -5.36441 | gap 1, overlap 1781304 TTTCCATACAAAAAA CCACTACTA-TATGGAA AATTGCA TTCCATCCTAGTAGCGG TCCATAAACCAAGAA PEPE_1803 1782206 - 1781385 - | HAD superfamily hydrolase PEPE_1804 1784211 - 1782238 - | Beta-glucoside-specific PTS system IIABC component TERM 2094 1782580 - 1782565 - G 72 -6.1 -4.43189 | AGTAACTCCACAAAA GGCTG AAATGG CAGCC GCAAATGATAAACTC PEPE_1805 1784429 - 1785151 + | GntR family transcriptional regulator PEPE_1806 1785154 - 1786800 + | alpha, alpha-phosphotrehalase TERM 2095 1786848 - 1786811 - T 89 -8.6 -4.65916 | opp_overlap 1786814, overlap 1786814 TTTAGTGCAATAAAA TAAGTCCTTCAAGTTA ACTAAG TAGCTTGAAGGACTTT TATTATCTAGCATTA TERM 2096 1786845 - 1786814 - T 95 -10.3 -4.43909 | opp_overlap 1786814, overlap 1786811 AGTGCAATAAAATAA GTCCTTCAAGTTA ACTAAG TAGCTTGAAGGAC TTTTATTATCTAGCA TERM 2097 1786814 - 1786845 + T 100 -12.5 -4.84311 | opp_overlap 1786814 1786811 AGTGCAATAAAATAA GTCCTTCAAGTTA ACTAAG TAGCTTGAAGGAC TTTTATTATCTAGCA PEPE_1807 1787163 - 1786879 - | hypothetical protein TERM 2098 1787584 - 1787596 + G 76 -2.7 -5.45726 | TTAGCTTTTGCTGCT GAATA TAA TGTTC TTTTTTTGGAATCTC PEPE_1809 1787563 - 1788252 + | transcriptional regulator TERM 2099 1788284 - 1788307 + F 100 -8.2 -5.58179 | opp_overlap 1788284 CATGCTGTAGTAAAA TGAGACGATG AAGT CATCATCTCA TTTTTTGTTATAATG TERM 2100 1788307 - 1788284 - f 95 -10.4 -4.2558 | opp_overlap 1788284 CATGCTGTAGTAAAA TGAGACGATG AAGT CATCATCTCA TTTTTTGTTATAATG PEPE_1810 1788363 - 1790462 + | NhaP-type Na+/H+ and K+/H+ antiporter TERM 2101 1790475 - 1790518 + F 95 -10.4 -4.43309 | opp_overlap 1790475 TAAGCATTTTAAAAA CACCTCTTGCGCGTTACTTA TTTA TAAGTAGCACATAGGAGGTG TTTTAGTTCGAATTA TERM 2102 1790518 - 1790475 - f 85 -8.2 -4.64598 | opp_overlap 1790475 TAAGCATTTTAAAAA CACCTCTTGCGCGTTACTTA TTTA TAAGTAGCACATAGGAGGTG TTTTAGTTCGAATTA TERM 2103 1791088 - 1791077 - g 70 -3 -5.04356 | TCAAACAATCAAAAA TGAA TATA TTCA AAAAAATATTTTTAT PEPE_1811 1790893 - 1791156 + | hypothetical protein PEPE_1812 1791361 - 1791783 + | large-conductance mechanosensitive channel TERM 2104 1791793 - 1791820 + T 100 -15.8 -5.52986 | opp_overlap 1791793 AAATAACCTAAAAAA CGTTTCTTGAGA GTTT TCTCAAGAAACG TTTTTTTACTAAAGT TERM 2105 1791820 - 1791793 - T 100 -15.8 -5.23016 | opp_overlap 1791793 AAATAACCTAAAAAA CGTTTCTTGAGA GTTT TCTCAAGAAACG TTTTTTTACTAAAGT PEPE_1813 1794165 - 1791835 - | peptide ABC transporter ATPase PEPE_1814 1794297 - 1794770 + | transcriptional regulator TERM 2106 1794792 - 1794825 + T 100 -15.5 -3.79481 | opp_overlap 1794794, overlap 1794782 1794794 TACGATTTATGAAAA AAGAGCCTTACAAGT AACT ACTTGTAAGGCTCTC TTTAACTTCAATTTA TERM 2107 1794823 - 1794794 - T 100 -18.1 -5.1675 | opp_overlap 1794794 1794792 1794782 CGATTTATGAAAAAA GAGCCTTACAAGT AACT ACTTGTAAGGCTC TCTTTAACTTCAATT TERM 2108 1794794 - 1794823 + T 100 -18.1 -3.47184 | opp_overlap 1794794, overlap 1794792 1794782 CGATTTATGAAAAAA GAGCCTTACAAGT AACT ACTTGTAAGGCTC TCTTTAACTTCAATT PEPE_1815 1795180 - 1794833 - | hypothetical protein TERM 2109 1795214 - 1795257 + r 71 -7.6 -3.38158 | opp_overlap 1795215 1795220, overlap 1795220 CAATTTTATTAGAAA ACAAAATCCCCCAAATCAAT TGTA GTTGATTTAGAGGATTTTGC TTCACTTATTTTACT TERM 2110 1795256 - 1795215 - R 100 -14.8 -4.47328 | opp_overlap 1795214 1795220, overlap 1795220 AATTTTATTAGAAAA CAAAATCCCCCAAATCAA TTGTAG TTGATTTAGAGGATTTTG CTTCACTTATTTTAC TERM 2111 1795251 - 1795220 - R 95 -8.9 -5.20781 | opp_overlap 1795214 1795220, overlap 1795215 TATTAGAAAACAAAA TCCCCCAAATCAA TTGTAG TTGATTTAGAGGA TTTTGCTTCACTTAT PEPE_1816 1797247 - 1795268 - | N-acetylglucosamine and glucose PTS, EIICBA PEPE_1817 1798002 - 1797532 - | 6,7-dimethyl-8-ribityllumazine synthase PEPE_1818 1799217 - 1798003 - | GTP cyclohydrolase II TERM 2112 1798689 - 1798707 + g 75 -4.4 -5.03145 | ATTTAAGGGTGTTTC GACGGGCC ATT GTGCCGTC TTTTTTCAAAACTTC PEPE_1819 1799812 - 1799207 - | riboflavin synthase subunit alpha PEPE_1820 1800874 - 1799813 - | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase TERM 2113 1800883 - 1800915 + H 72 -4.7 -4.7497 | opp_overlap 1800887, overlap 1800884 1800886 1800887 AAATCACCCCACGAA AAAAGCCCCACACAA AAT TTGTGCGGGGCATGA TTTTTGATAGCTAAA TERM 2114 1800884 - 1800914 + H 73 -8.2 -3.445 | opp_overlap 1800887, overlap 1800883 1800886 1800887 AATCACCCCACGAAA AAAGCCCCACACAA AAT TTGTGCGGGGCATG ATTTTTGATAGCTAA TERM 2115 1800886 - 1800912 + H 85 -10.8 -3.28873 | opp_overlap 1800887, overlap 1800884 1800883 1800887 TCACCCCACGAAAAA AGCCCCACACAA AAT TTGTGCGGGGCA TGATTTTTGATAGCT TERM 2116 1800887 - 1800911 + H 100 -14.3 -2.56601 | opp_overlap 1800887, overlap 1800886 1800884 1800883 CACCCCACGAAAAAA GCCCCACACAA AAT TTGTGCGGGGC ATGATTTTTGATAGC TERM 2117 1800911 - 1800887 - H 100 -16.5 -5.15634 | opp_overlap 1800886 1800884 1800883 1800887 CACCCCACGAAAAAA GCCCCACACAA AAT TTGTGCGGGGC ATGATTTTTGATAGC TERM 2118 1801347 - 1801335 - g 72 -7.7 -3.77464 | ATATCATTCAGTAAA TCCGT ACG ACGGA CAATTAATTCGCACA TERM 2119 1801811 - 1801834 + G 72 -8.9 -3.36273 | CCGAATGTGCTCAAG CCTTCGAGG ACGCGA CCTTGAAGG TTGGTATTCCAACGG PEPE_1821 1801315 - 1802685 + | NAD-dependent aldehyde dehydrogenase PEPE_1822 1802773 - 1803960 + | acetate kinase TERM 2120 1803973 - 1804000 + F 100 -16.4 -5.00923 | opp_overlap 1803967 TAAATTGAACTTCAA CCCCCAAGCTTG TAAA TAAGCTTGGGGG TTTTCTTTACTATTT TERM 2121 1804047 - 1804029 - f 71 -7.6 -3.39595 | opp_overlap 1804029 TTTAATCATTTATAA TACTATAT GAG ATATAGTA TTATGGAGGTGAGCA PEPE_1823 1804064 - 1804384 + | PadR family transcriptional regulator PEPE_1824 1804377 - 1804997 + | hypothetical protein PEPE_1825 1804997 - 1805917 + | hypothetical protein TERM 2122 1805943 - 1805925 - T 100 -13.2 -4.96646 | opp_overlap 1805925 TCAGATAATTAAAAA TCCGCCTT TTA AAGGCGGA TTTTTTTAGTTGAAC TERM 2123 1805925 - 1805943 + T 100 -13.2 -5.63103 | opp_overlap 1805925 TCAGATAATTAAAAA TCCGCCTT TTA AAGGCGGA TTTTTTTAGTTGAAC PEPE_1826 1807022 - 1805949 - | microcin C7 resistance MccF-like protein TERM 2124 1807038 - 1807059 + H 72 -8.9 -2.66296 | overlap 1807037 CACCTCTCACCCCAC TTTAACTTC ATCT GAAGTTAAA ATTATCAATCTTATT TERM 2125 1807376 - 1807363 - g 78 -3.1 -5.40474 | ATCTCTGTAAAAAAA GCTTC ACCT GAAAC TCACCAACGTATCAT PEPE_1827 1807228 - 1807455 + | hypothetical protein TERM 2126 1807453 - 1807488 + T 100 -15.8 -3.35344 | opp_overlap 1807457 1807464, overlap 1807457 1807464 GGAAAATGGTTAGGA TAAATAAAAAACGCCT AAAA AGGCGTTTTTTATTTG TTCATATAATTTGAA TERM 2127 1807484 - 1807457 - T 100 -14.4 -3.96892 | opp_overlap 1807453 1807457 1807464, overlap 1807464 AATGGTTAGGATAAA TAAAAAACGCCT AAAA AGGCGTTTTTTA TTTGTTCATATAATT TERM 2128 1807457 - 1807484 + T 100 -14.4 -4.3078 | opp_overlap 1807457 1807464, overlap 1807453 1807464 AATGGTTAGGATAAA TAAAAAACGCCT AAAA AGGCGTTTTTTA TTTGTTCATATAATT TERM 2129 1807477 - 1807464 - T 100 -8.1 -5.73978 | opp_overlap 1807464 1807457 1807453, overlap 1807457 AGGATAAATAAAAAA CGCCT AAAA AGGCG TTTTTTATTTGTTCA TERM 2130 1807464 - 1807477 + T 100 -8.1 -5.80003 | opp_overlap 1807457 1807464, overlap 1807457 1807453 AGGATAAATAAAAAA CGCCT AAAA AGGCG TTTTTTATTTGTTCA PEPE_1828 1808102 - 1807482 - | hypothetical protein PEPE_1829 1808227 - 1808421 + | transcriptional regulator PEPE_1830 1808436 - 1808876 + | hypothetical protein TERM 2131 1809012 - 1808986 - T 100 -13.9 -5.63517 | opp_overlap 1808986 TGTTTAAACAAAAAA CACTTACCAAG ACAAA CTTGGTAAGTG TTTTTGATTATTTAT TERM 2132 1808986 - 1809012 + T 100 -13.9 -5.05712 | opp_overlap 1808986 TGTTTAAACAAAAAA CACTTACCAAG ACAAA CTTGGTAAGTG TTTTTGATTATTTAT PEPE_1831 1809499 - 1809020 - | hypothetical protein TERM 2133 1809957 - 1809993 + r 87 -4.6 -5.83226 | opp_overlap 1809958, overlap 1809958 CTTTTTCGCAAAAAA ACTGCAACTAATTT TGCCATATT AGATTAGTTGCAGC TTTTTTTATTGAATT TERM 2134 1809992 - 1809958 - R 86 -5.9 -5.40072 | opp_overlap 1809958 1809957 TTTTTCGCAAAAAAA CTGCAACTAATTT TGCCATATT AGATTAGTTGCAG CTTTTTTTATTGAAT TERM 2135 1809958 - 1809992 + r 79 -8.1 -4.07495 | opp_overlap 1809958, overlap 1809957 TTTTTCGCAAAAAAA CTGCAACTAATTT TGCCATATT AGATTAGTTGCAG CTTTTTTTATTGAAT PEPE_1832 1813706 - 1809999 - | DNA helicase/exodeoxyribonuclease V, subunit A TERM 2136 1813464 - 1813444 - G 72 -5.5 -4.66163 | opp_overlap 1813434 AGCTGCATTGAAAAA TGATTTTGA AGT TCAATATCA CTCACTTCATTAATC PEPE_1833 1817274 - 1813696 - | DNA helicase/exodeoxyribonuclease V, subunit B TERM 2137 1816496 - 1816524 + g 72 -4.7 -4.72272 | opp_overlap 1816513, overlap 1816492 1816497 AAAATTATTTTTTCG TTTTCAAAAAACA AAC TGTTTTCTGAAAC TTTTTCATAAAGCGG TERM 2138 1816497 - 1816523 + g 71 -8.2 -3.43042 | opp_overlap 1816513, overlap 1816492 1816496 AAATTATTTTTTCGT TTTCAAAAAACA AAC TGTTTTCTGAAA CTTTTTCATAAAGCG PEPE_1834 1817825 - 1817283 - | saccharopine dehydrogenase related protein TERM 2139 1817542 - 1817560 + g 89 -10.4 -4.57482 | TTCAAATCTTGAACT TCAATCCA GTT TGGATTGA TTTCTTTATCCATGC TERM 2140 1818063 - 1818085 + H 88 -6.3 -5.50313 | TTATGTATTATGATG GCTTGAGAC TTTTT GTCTTGAGC TTTTTTAGTTTTATA PEPE_1835 1818151 - 1819476 + | xanthine/uracil permease TERM 2141 1819507 - 1819542 + F 95 -8.6 -5.29846 | gap 1, opp_overlap 1819507 1819519, overlap 1819535 AATTAATTAAACTAA TGTTTTTAATTACCCTT TCA AAGGG-AGTTAAAAGCA TTTTTATTTAGAATT TERM 2142 1819744 - 1819758 + G 76 -8.6 -3.82097 | ATTAATAAGCGTGCG GCCTTT AAA AAAGGC TTTCATAACTTTGAA PEPE_1836 1819570 - 1820136 + | DNA-3-methyladenine glycosylase I PEPE_1837 1820156 - 1821130 + | lysophospholipase L1 related esterase TERM 2143 1821112 - 1821150 + T 100 -11.8 -5.38497 | opp_overlap 1821112 TACTGAACCTCAAAA CAGGTTACAATCGGAGTA ATA TTCTCCTCTTGTAACCTG TTTTTTAATTTCGAT TERM 2144 1821150 - 1821112 - T 100 -11.8 -4.19953 | opp_overlap 1821112 TACTGAACCTCAAAA CAGGTTACAATCGGAGTA ATA TTCTCCTCTTGTAACCTG TTTTTTAATTTCGAT PEPE_1838 1822522 - 1821155 - | Na+/H+ antiporter TERM 2145 1822328 - 1822310 - G 73 -3 -5.18409 | opp_overlap 1822312 1822313, overlap 1822312 1822313 TAAAATAAAAATAAA GATGGGGA TAA TCCCCGTT TCAATTCCATTTTTA TERM 2146 1822312 - 1822326 + g 72 -7.8 -3.80083 | opp_overlap 1822312 1822310 1822313, overlap 1822313 AAATAAAAATAAAGA TGGGGA TAA TCCCCG TTTCAATTCCATTTT TERM 2147 1822585 - 1822553 - R 100 -13.5 -5.52384 | overlap 1822554 TTTTGACCAAAAAAA TGTCCCTGCTGCATC ATA AATGCAACAGGGACG ATATGGAGACCGTGG TERM 2148 1822584 - 1822554 - R 100 -17 -3.90707 | overlap 1822553 TTTGACCAAAAAAAT GTCCCTGCTGCATC ATA AATGCAACAGGGAC GATATGGAGACCGTG PEPE_1839 1824306 - 1822843 - | cardiolipin synthetase 2 TERM 2149 1824577 - 1824599 + r 100 -9.1 -6.08342 | TATTACCTGTATATG CGTCTCTCC CCCCT GGTGAGACG TTTTTTTATTTCTTA TERM 2150 1824618 - 1824661 + r 100 -9.8 -4.80453 | opp_overlap 1824625, overlap 1824625 TTTTATTTCTTAAAA TAATAAAGCATTCGATACTT TATA AAGTACCGAATGCTTTCTAA TTTATTTTCTAATCC TERM 2151 1824654 - 1824625 - R 100 -14.5 -4.67697 | opp_overlap 1824618 1824625 TCTTAAAATAATAAA GCATTCGATACTT TATA AAGTACCGAATGC TTTCTAATTTATTTT TERM 2152 1824625 - 1824654 + r 100 -12.3 -4.24747 | opp_overlap 1824625, overlap 1824618 TCTTAAAATAATAAA GCATTCGATACTT TATA AAGTACCGAATGC TTTCTAATTTATTTT PEPE_1840 1825068 - 1824670 - | diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases TERM 2153 1825197 - 1825163 - R 95 -8.7 -4.96501 | opp_overlap 1825171, overlap 1825171 CTTCATAAAAACAAA CAAAAAAAGCTGCGA CTATC TCACAGCTTTCTTAG CTTAATCGGTTGCTA TERM 2154 1825189 - 1825171 - R 100 -6.7 -6.11392 | opp_overlap 1825171, overlap 1825163 AAACAAACAAAAAAA GCTGCGA CTATC TCACAGC TTTCTTAGCTTAATC PEPE_1841 1825777 - 1825199 - | Signal peptidase I PEPE_1842 1826724 - 1825969 - | hypothetical protein TERM 2155 1826814 - 1826842 + r 93 -6.7 -5.34365 | opp_overlap 1826795 1826817, overlap 1826815 1826817 TTTTGTGAAACAAAA AAAGCTCCTTGAA TTT TTCAAGGGGCTAA TTTTTGTTATTCTGC TERM 2156 1826815 - 1826841 + r 87 -10.2 -3.78992 | opp_overlap 1826795 1826817, overlap 1826814 1826817 TTTGTGAAACAAAAA AAGCTCCTTGAA TTT TTCAAGGGGCTA ATTTTTGTTATTCTG TERM 2157 1826817 - 1826839 + r 100 -12.8 -3.44752 | opp_overlap 1826817, overlap 1826815 1826814 TGTGAAACAAAAAAA GCTCCTTGAA TTT TTCAAGGGGC TAATTTTTGTTATTC TERM 2158 1826839 - 1826817 - R 100 -10.6 -5.95539 | opp_overlap 1826817 1826815 1826814 TGTGAAACAAAAAAA GCTCCTTGAA TTT TTCAAGGGGC TAATTTTTGTTATTC PEPE_1843 1828762 - 1826849 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 2159 1827965 - 1827984 + g 76 -2.8 -5.4387 | AGCTCGATCTAAATT CTCGCGAA TGAT TTCATGAG TTTTTTCATTTGTGT trmE 1830174 - 1828780 - | tRNA modification GTPase TrmE TERM 2160 1830452 - 1830422 - R 88 -6.8 -5.15634 | opp_overlap 1830422 TAGTCCATCAAAAAA GCAATCACCCCTGC GAA ACAGTTGCGATTGC TTTCATAAATTATTT PEPE_1845 1831301 - 1830462 - | preprotein translocase subunit YidC TERM 2161 1830525 - 1830535 + g 79 -4 -5.4756 | TTTACGCTTTGCCTT TTCA GTT TGAA TTTTTTCTTCACGTT PEPE_1846 1831660 - 1831301 - | RNase P protein component TERM 2162 1831596 - 1831633 + g 79 -5.1 -5.28481 | gap 1, opp_overlap 1831602, overlap 1831602 TTTTTATTTGCAAAT GAATTACGAGTTTCAAAG ACC TTTTGAAACTCA-AGTTC TTTTTTGATTCGATA TERM 2163 1831749 - 1831768 + r 74 -7.8 -3.79906 | opp_overlap 1831749 ATTTAAAAAATAAAA GACCACTG GGAT CAGTGGCC TTATTATGCAGATAA TERM 2164 1831768 - 1831749 - R 100 -10 -5.43553 | opp_overlap 1831749 ATTTAAAAAATAAAA GACCACTG GGAT CAGTGGCC TTATTATGCAGATAA PEPE_1847 1831906 - 1831772 - | 50S ribosomal protein L34P