TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.627276 %AT, 1379043 nt, 7562 terms. Intergenic: 0.748915 %AT, H2T: 131024 nt, 884 terms; T2T: 39182 nt, 407 terms; H2H: 70562 nt, 1127 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|48477072|ref|NC_005877.1| Picrophilus torridus DSM 9790, complete genome (length 1545895) PTO0001 1 - 345 + | hypothetical protein TERM 1 337 - 348 + T 78 -3 -5.75538 | opp_overlap 337 AACAATATAATAAAT GATT TTTA AATC TTTTTGTTTTTTAAA PTO0002 787 - 524 - | putative protein involved in DNA replication PTO0003 1748 - 792 - | DNA polymerase PTO0004 2260 - 1751 - | hypothetical protein TERM 2 2184 - 2170 - G 74 -5.8 -4.67943 | CCCTAACATAGAAAA TTTCAT GTA ATGAAA GCCAGGCACGTCTCA PTO0005 4009 - 2270 - | DEAD/DEAH box helicase PTO0006 4649 - 3990 - | hypothetical protein PTO0007 5601 - 4669 - | hypothetical protein PTO0008 8161 - 5603 - | hypothetical protein PTO0009 8859 - 8158 - | hypothetical protein TERM 3 8929 - 8913 - g 74 -5.2 -5.01497 | ATGACTATACAAAAA GAAGAA AATAA TTCTTC AAATTTAGCGGTAAC PTO0010 8898 - 9590 + | hypothetical protein TERM 4 9620 - 9630 + T 78 -2.6 -5.85011 | overlap 9626 ATAATTATAATCTTC TTTA TTT TAAA TTTTTTTAATTTTTC PTO0011 10694 - 9705 - | N-acetylglucosamine kinase TERM 5 10531 - 10544 + g 73 -6.7 -4.34759 | opp_overlap 10531 10530 TTTATATTCGATAAT GCCAT TTTC ATGGC TTTATTAATATTATC PTO0012 11632 - 10691 - | isomerizing glucosamine--fructose-6-phosphate aminotransferase TERM 6 11289 - 11305 + g 79 -2.3 -5.52384 | ATTCCATTTGTAATT GATATTA TTT TAAAATC TTTTTTTCGTGCCGA PTO0013 11719 - 12855 + | N-acetylglucosamine-6-phosphate deacetylase TERM 7 13476 - 13464 - g 79 -10.5 -3.33573 | ATCAACAAGGATGAA GGCCG GAA CGGCC CAGAAGATGGCGCTT murQ 12889 - 13713 + | N-acetylmuramic acid-6-phosphate etherase PTO0015 13759 - 14730 + | D-Ala-D-Ala carboxypeptidase 3 TERM 8 15607 - 15646 + G 70 -7.9 -3.58533 | gap 1, overlap 15609 AGCCCGGGAGGTATC TC-GTTGCGGATGCAGGC ATAGC GCTTGCAACCGTGACTGA TTTAAAGAATTATGG TERM 9 15609 - 15643 + G 77 -10.7 -2.9162 | overlap 15607 CCCGGGAGGTATCTC GTTGCGGATGCAGGC ATAGC GCTTGCAACCGTGAC TGATTTAAAGAATTA PTO0016 14769 - 16028 + | diaminopimelate decarboxylase PTO0017 16704 - 16006 - | hypothetical protein TERM 10 16835 - 16813 - H 70 -5.1 -4.61527 | opp_overlap 16807 AAAATGTTTTAAAAA TTTTATTTA GTTTT TAAATAAAA ATAAAATTTATTAAA TERM 11 19508 - 19526 + G 78 -11 -2.51725 | opp_overlap 19500, overlap 19508 19500 TATGCAATCCTGTGA CCGGAAGC CCG GTTTCCGG ATATTCATATACAAT PTO0018 16975 - 20850 + | extracellular solute-binding protein TERM 12 21591 - 21563 - g 75 -8.2 -3.85704 | gap 1, overlap 21555 21566 CCATGAATCATGAAA TGACGGCACCGAC AGAG ATCGATGCCG-CA CGTGGTTTAATCCAC TERM 13 21589 - 21566 - g 79 -11 -2.99951 | overlap 21563 TGAATCATGAAATGA CGGCACCGAC AGAG ATCGATGCCG CACGTGGTTTAATCC TERM 14 21649 - 21663 + G 72 -9.2 -2.78776 | overlap 21648 GGCCTCGGCGGCGTT GCCGGT CAT GCCGGC CTGTTTTCCAACGTT PTO0019 20992 - 22047 + | beta lactamase PTO0020 22078 - 23442 + | beta-hexosaminidase PTO0021 24539 - 23451 - | O-succinylbenzoate-CoA synthase TERM 15 24183 - 24196 + g 74 -5.2 -4.9181 | AAGCATTCTCTTTAA GGGC ATGCCC GCCC TTTTTGATATTATAT TERM 16 24525 - 24547 + g 79 -8.6 -4.05848 | opp_overlap 24529, overlap 24546 TATTTCCTCTATCAT TATATGGTAT AAC ATGCCATATA TTTAATTGTATCATT TERM 17 25269 - 25253 - g 77 -5.9 -4.71584 | TAAAGAAAGAACAAA CCTTAAC ATA GTTAAAG TTAAAAACTGGAGGA TERM 18 25490 - 25480 - g 80 -2.6 -5.66868 | AATTAAGTAAAAAAA TAAA TGA TTTA AAGATTCCAGGCGTA PTO0022 24615 - 25811 + | hypothetical protein PTO0023 26321 - 25815 - | hypothetical protein TERM 19 26082 - 26060 - G 82 -9.2 -4.09243 | overlap 26063 TATATTCCTTTAAAA GAATGCCTGT GGA AAAGGCATTC CCAATTGTTGATGTT PTO0024 27236 - 26538 - | hypothetical protein PTO0025 27996 - 27316 - | hypothetical protein PTO0026 28360 - 28028 - | hypothetical protein TERM 20 28164 - 28140 - G 70 -8.7 -3.14393 | overlap 28138 AGGAGAGATTCAACA CCGGAATAATA CGC TATTATCCCGA AAATGAAAAATGTCA TERM 21 29448 - 29400 - R 71 -8.7 -2.78891 | opp_overlap 29400, overlap 29397 29438 ATTTTAATTTAACTA TTTAATTTATATATTTAATATAT TAA ACTTTTTAAATATATAAATTAAA TTAATTTTAAATTAT TERM 22 29770 - 29745 - R 93 -9.1 -4.89009 | opp_overlap 29745 ATATTTAAGCAAAAA TGCCGTATAAC GTTT GTTATACTGCA TTATTTAGGATATTT TERM 23 29745 - 29770 + r 83 -9.1 -3.97051 | opp_overlap 29745 ATATTTAAGCAAAAA TGCCGTATAAC GTTT GTTATACTGCA TTATTTAGGATATTT TERM 24 30038 - 30013 - R 71 -5 -4.87328 | opp_overlap 30013 TATATAAATATAAAA TAATTTATTA ATTATA TAATAAATTA AAATAAATTATACTG TERM 25 30161 - 30189 + r 79 -8.5 -3.73359 | opp_overlap 30161 30166, overlap 30162 30166 AATAATAAAATGATA TTAAATTTTTTTA AAG TAAAAAAATTTAG TTATATTGCATTATT TERM 26 30162 - 30188 + r 76 -9.8 -2.82931 | opp_overlap 30161 30166, overlap 30161 30166 ATAATAAAATGATAT TAAATTTTTTTA AAG TAAAAAAATTTA GTTATATTGCATTAT TERM 27 30166 - 30184 + r 70 -6.2 -4.08221 | opp_overlap 30166 30161, overlap 30162 30161 TAAAATGATATTAAA TTTTTTTA AAG TAAAAAAA TTTAGTTATATTGCA PTO0027 31348 - 30695 - | hypothetical protein PTO0028 33567 - 31996 - | 5-methylcytosine-specific restriction enzyme subunit McrB TERM 28 33090 - 33109 + g 73 -3.6 -5.07275 | TTTTGCGATCTTTGG TCAAAAAG TTTA CATTTTGA TTTTTGTCTATATCA TERM 29 34837 - 34850 + H 74 -5.3 -4.78029 | opp_overlap 34837 ATACATAATATTATA TCTGA TGAT TCAGA TTTTGATTTTGTTCA TERM 30 36276 - 36239 - g 70 -8.6 -3.17325 | opp_overlap 36246, overlap 36244 36246 ATTTTTTATAATATA GCAAATAGATCAGATG ATTATG CATCTAATCTTCTTGC AATGATTATTGTTGA PTO0029 35303 - 36313 + | hypothetical protein PTO0030 36561 - 37298 + | hypothetical protein PTO0031 37675 - 37400 - | hypothetical protein PTO0032 38469 - 38056 - | hypothetical protein TERM 31 38268 - 38278 + g 81 -6.8 -4.87665 | overlap 38261 GAATTATATATTCTA GGGA TAT TCCC TTTTTGTCAATAAGA PTO0033 39232 - 39843 + | hypothetical protein PTO0034 39836 - 40624 + | hypothetical protein TERM 32 41552 - 41525 - T 77 -7.2 -4.29139 | opp_overlap 41525 41530, overlap 41509 41522 TTAAATTGAAAATAA CTAAAGTTATAT TTCT ATATAACTTTTG TATATTATGTTGTTA TERM 33 41530 - 41547 + T 73 -5.7 -4.72127 | opp_overlap 41509 41525 41522, overlap 41525 TTGAAAATAACTAAA GTTATAT TTCT ATATAAC TTTTGTATATTATGT PTO0035 42065 - 41799 - | hypothetical protein TERM 34 41860 - 41840 - G 85 -6.9 -5.09685 | GAACATATATAAAAA TGCCTGAAA TGC TTCCAAGCA TCAACGTAAATTTCC TERM 35 41978 - 41966 - G 79 -7.7 -4.34263 | TTCCAACAATATAAA CTGCA AGA TGCAG GTAAAGGCTTAAAAA TERM 36 42689 - 42674 - H 75 -3.4 -5.5943 | opp_overlap 42688 AAATTATGAAAAAAA TATAAA AATG TTTATA ATACACCTATTATTT PTO0036 42712 - 43287 + | methyltransferase PTO0037 43447 - 44025 + | amino acid permease PTO0038 43985 - 44374 + | amino acid permease PTO0039 45270 - 45833 + | precorrin-6X reductase PTO0040 45811 - 46242 + | precorrin-8X methylmutase PTO0041 46642 - 46887 + | precorrin-2 C20-methyltransferase PTO0042 46817 - 47110 + | NADH oxidase PTO0043 48432 - 47251 - | altronate hydrolase TERM 37 47594 - 47606 + g 70 -7.7 -3.63589 | ATCAGATAATGCCCG GGCTT TGA AAGCC TTTCACCATATTTTA PTO0044 48728 - 48432 - | altronate hydrolase PTO0045 49160 - 49405 + | nucleotidyltransferase PTO0046 49390 - 49590 + | nucleotidyltransferase TERM 38 50318 - 50328 + T 76 -6.8 -4.41348 | overlap 50304 50324 CATAAAGGCCGGCAA GGCT TTT AGCC TTTGTTTCAAAGCCC PTO0047 51064 - 50573 - | hypothetical protein PTO0048 52795 - 52535 - | hypothetical protein PTO0049 53757 - 52795 - | DNA polymerase TERM 39 53340 - 53360 + g 80 -2.5 -5.65678 | overlap 53341 53342 53357 TGTTTATATTATTGC CATCAGGAT AAT ATCCTGAAA TTTTTTCTATTTTAT TERM 40 53342 - 53358 + g 73 -9.5 -2.95008 | overlap 53341 53340 53357 TTTATATTATTGCCA TCAGGAT AAT ATCCTGA AATTTTTTCTATTTT PTO0050 54914 - 53790 - | hypothetical protein PTO0051 55815 - 54904 - | hypothetical protein PTO0052 56548 - 55796 - | hypothetical protein PTO0053 59190 - 56884 - | HD domain-containing protein TERM 41 56943 - 56919 - G 70 -7.3 -3.78934 | opp_overlap 56919, overlap 56924 TCGTCTTTATAACAA TATAAGAACTT AAA AAGTTCATATA TTTAAAATTATCATC TERM 42 56938 - 56924 - G 72 -7.2 -3.87364 | opp_overlap 56919, overlap 56919 TTTATAACAATATAA GAACTT AAA AAGTTC ATATATTTAAAATTA TERM 43 58120 - 58150 + g 85 -9.8 -4.14977 | TCCGAAAAGATCACC CGAGGAAGATTTAT CAA GTAGATCATCCTCG TTATTTATCGTATTA TERM 44 59091 - 59103 + g 81 -3.3 -5.52096 | TTATAAATTCATACC CAAGC TCT GCATG TTTTTTATTCAATTT PTO0054 59902 - 59180 - | hypothetical protein PTO0055 61107 - 60523 - | hypothetical protein TERM 45 62035 - 62025 - R 70 -5.4 -4.69664 | overlap 62027 CACATTATGTAAAAA TGTC TGA GACA GATCAGAGAAGATCA PTO0056 63521 - 62769 - | hypothetical protein TERM 46 62983 - 62971 - G 76 -4.9 -5.055 | GGAACCTTTAAAAAA TAAAC GTC GTTTA AATCAGGATAAAAAA PTO0057 64910 - 63594 - | hypothetical protein PTO0058 66153 - 64858 - | hypothetical protein TERM 47 65967 - 66005 + gH 100 -8.2 -5.47218 | TACCAGAATCAAGGC TGGCCGGCCATAAGAAGA TTA TCTTTTTATCACCGGGCA TTTTTTTAAATACAA PTO0059 66305 - 66817 + | SAM-dependent methyltransferase TERM 48 66879 - 66917 + F 83 -10.4 -3.10354 | opp_overlap 66879 66883, overlap 66872 66883 66887 TGGCAATGCTTATAA GTAAGTATGTACTTCCTT AGT AAGGTGGTACTTACTTGC TGTTCGATCCATATC PTO0060 66914 - 67993 + | hypothetical protein TERM 49 68078 - 68062 - T 74 -5.1 -4.80455 | opp_overlap 68063, overlap 68063 CATGCAAATATAAAA TCACATC AAT GATGTGT TTAAACATGGCCTTT TERM 50 68063 - 68077 + T 77 -8.6 -3.5764 | opp_overlap 68062 68063 ATGCAAATATAAAAT CACATC AAT GATGTG TTTAAACATGGCCTT TERM 51 68077 - 68063 - T 75 -8.6 -3.47188 | opp_overlap 68063, overlap 68062 ATGCAAATATAAAAT CACATC AAT GATGTG TTTAAACATGGCCTT PTO0061 68540 - 68124 - | hypothetical protein PTO0062 69381 - 68683 - | hypothetical protein PTO0063 69968 - 69483 - | transcriptional regulatory protein PTO0064 71200 - 69983 - | permease PTO0065 72417 - 71191 - | sugar transporter TERM 52 71510 - 71494 - G 72 -5.1 -4.81523 | overlap 71496 AAGGAAAAATGAAAA GACCTGA AAT TCAGGTA TCAGGAACATGGCAA TERM 53 71508 - 71496 - G 74 -7.7 -3.99386 | overlap 71494 GGAAAAATGAAAAGA CCTGA AAT TCAGG TATCAGGAACATGGC TERM 54 72566 - 72579 + r 78 -3.1 -5.77632 | GAAATGCCCAGAATG CCGTT ATTT AATGG TTTTTTTATCGTTTT PTO0066 72877 - 72761 - | hypothetical protein TERM 55 73111 - 73096 - g 85 -4.8 -5.62045 | ATAGATAACAAAAAA TATCAA ATGA TTGATA ATGGCAAGGTTTTTG TERM 56 74574 - 74584 + G 74 -5.4 -4.82901 | GTTTTCATATCCAGG GAAG AAG CTTC TTTTTATGGGCAACG TERM 57 75012 - 74984 - g 73 -7.3 -4.05747 | opp_overlap 74989, overlap 74986 74988 74989 GATACTCGATAGAAA TAGATCTGCCGCC ACT GGCGGCAGTTATT ATGGAGCCGGAGGAT TERM 58 75010 - 74986 - g 80 -9.9 -3.61946 | opp_overlap 74989, overlap 74984 74988 74989 TACTCGATAGAAATA GATCTGCCGCC ACT GGCGGCAGTTA TTATGGAGCCGGAGG TERM 59 75008 - 74988 - g 95 -12.5 -3.38294 | opp_overlap 74989, overlap 74986 74984 74989 CTCGATAGAAATAGA TCTGCCGCC ACT GGCGGCAGT TATTATGGAGCCGGA TERM 60 74989 - 75007 + G 100 -16 -3.78934 | opp_overlap 74988 74986 74984 74989 TCGATAGAAATAGAT CTGCCGCC ACT GGCGGCAG TTATTATGGAGCCGG TERM 61 75007 - 74989 - g 100 -16 -2.62495 | opp_overlap 74989, overlap 74988 74986 74984 TCGATAGAAATAGAT CTGCCGCC ACT GGCGGCAG TTATTATGGAGCCGG PTO0067 72934 - 75051 + | glycogen branching enzyme TERM 62 76771 - 76794 + G 75 -8.3 -3.77666 | AGGTTTTATAAGGGT TCCATTGAA TGATTT TTCAATGGA TTTAAATTCCATATA PTO0068 75032 - 76924 + | 1,4-alpha-glucan branching enzyme TERM 63 77802 - 77792 - gf 76 -6.8 -4.40601 | AATGGATATAATAAA GCAG ACG CTGC CGATACCTGATAACT TERM 64 78215 - 78240 + GF 73 -6.9 -4.14739 | gap 1, overlap 78215 78218 AAGCGTGAACGTTGA G-GCTGAGCTCA GGC TGAGCTCATCGC TTTTAAACTGGATGA TERM 65 78218 - 78236 + GF 87 -11.8 -2.75577 | overlap 78215 78215 CGTGAACGTTGAGGC TGAGCTCA GGC TGAGCTCA TCGCTTTTAAACTGG PTO0069 76917 - 78593 + | trehalose synthase TERM 66 79698 - 79677 - gT 84 -4.5 -5.53288 | overlap 79689 TTCAATGGAAAAAAA TTCAATGGA AAAT TTCATTGAA AGCTATAAATCCTCT PTO0070 78562 - 79872 + | hypothetical protein PTO0071 80227 - 79853 - | trehalose synthase PTO0072 81563 - 80244 - | transporter PTO0073 83101 - 81905 - | transporter TERM 67 83287 - 83273 - g 76 -5 -5.02074 | TTATTCTTTAAAAAA CTTTAC TAT GCAAAG GAAAAATTACCATAT PTO0074 83180 - 83521 + | hypothetical protein TERM 68 83511 - 83500 - T 72 -4.4 -5.00611 | TATAAATAAAAGAAA CCAA GCAA TTGG AAGACCCTGATAAAA TERM 69 83996 - 83965 - T 77 -6 -4.74989 | opp_overlap 83973, overlap 83956 83966 83968 83973 AAAGAACATAGAAAA CCATGAAATAAAGG ACGT CCTTTATTTCACCA AAAACATATTAGGAA TERM 70 83993 - 83968 - T 91 -12.1 -3.25888 | opp_overlap 83973, overlap 83956 83966 83965 83973 GAACATAGAAAACCA TGAAATAAAGG ACGT CCTTTATTTCA CCAAAAACATATTAG PTO0075 85236 - 84568 - | hypothetical protein TERM 71 84927 - 84946 + g 75 -2.2 -5.4182 | TTATTATTATTTTTT TAAAAACA ACAT TGTTTATA TTTTTATTTATAATT PTO0076 88213 - 85223 - | type I restriction-modification system restriction subunit PTO0077 89528 - 88203 - | type I restriction-modification system specificity subunit PTO0078 91251 - 89521 - | type I restriction-modification system methylation subunit TERM 72 91512 - 91498 - R 73 -3.6 -5.39721 | opp_overlap 91498, overlap 91491 TCATGACATAAAAAA GTTTTA TAG CAAAAC CTTTAGAATCATTAT PTO0079 91930 - 91625 - | hypothetical protein PTO0080 92225 - 93118 + | hypothetical protein PTO0081 94088 - 94732 + | hypothetical protein PTO0082 95265 - 95606 + | ArsR family transcriptional regulator TERM 73 96327 - 96337 + G 78 -5.4 -5.0538 | TAATGCTTTTTTACT TCCT CTC AGGA TTTTTTAAAATACCA TERM 74 96663 - 96683 + G 76 -9.9 -3.07344 | overlap 96667 TTGCAATTTCAGGTC TTAACAATC CTG GATTGTTAA TGTATTCAAACGTGA TERM 75 96814 - 96792 - g 70 -2.8 -5.17507 | overlap 96794 AAAATGCAATAAAAA TATCATATAA ATA TTACATGAAA TTTGGAATTATAACA PTO0083 95603 - 96886 + | arsenical pump membrane protein TERM 76 96885 - 96901 + F 83 -8.1 -4.52345 | opp_overlap 96884 96882 96885 96887 TTTCATTAATAATAT GATTTTC CAT GAAAATC TTTATTTAATGATAT cysS 96931 - 98298 + | cysteinyl-tRNA synthetase TERM 77 98698 - 98680 - g 74 -6 -4.62051 | opp_overlap 98692, overlap 98683 98685 AAATATTATAGAAAA GAGGAGAT GCG ATCTCGTC TCGGAGATATCGTAT PTO0085 98333 - 99481 + | cytochrome P450 TERM 78 100573 - 100605 + G 70 -6.9 -3.86015 | opp_overlap 100575 100598, overlap 100575 ATATTTTACTTTGCA AATGCCGGTGGTACC GGT GAGACCACTGGCATC TTTGTCAGCGAGCTG TERM 79 100575 - 100603 + G 77 -9.5 -3.51934 | opp_overlap 100575 100598, overlap 100573 ATTTTACTTTGCAAA TGCCGGTGGTACC GGT GAGACCACTGGCA TCTTTGTCAGCGAGC TERM 80 100603 - 100575 - g 78 -9.5 -3.55563 | opp_overlap 100575 100573, overlap 100598 ATTTTACTTTGCAAA TGCCGGTGGTACC GGT GAGACCACTGGCA TCTTTGTCAGCGAGC PTO0086 99523 - 100839 + | transporter PTO0087 102369 - 101296 - | glycerol-3-P ABC transporter ATP binding protein PTO0088 103184 - 102375 - | glycerol-3-P ABC transporter permease protein TERM 81 102532 - 102511 - G 76 -7.4 -4.2828 | opp_overlap 102513 TCGTATGCACCAAAA TAGCTGTA TATTGT TACAGCTA TTGGAAGAAGATTTT PTO0089 104071 - 103181 - | glycerol-3-P ABC transporter permease protein TERM 82 103378 - 103366 - G 82 -4.9 -5.45802 | CTGTTAAAACAAAAA TCATT GTA AATGA ACCAAGCGTAAAAAG PTO0090 105657 - 104077 - | glycerol-3-P ABC transporter solute binding protein TERM 83 105597 - 105629 + g 74 -5.1 -4.86773 | opp_overlap 105597 105603, overlap 105603 CAATTGCAACAACAA CAATAATAATTAC TATATAT GTAATTATTTTTG TTTTTCCTGATTTTC TERM 84 105603 - 105623 + g 80 -2.7 -5.65496 | opp_overlap 105603 105597, overlap 105597 CAACAACAACAATAA TAATTAC TATATAT GTAATTA TTTTTGTTTTTCCTG TERM 85 105910 - 105894 - g 81 -9.5 -3.90738 | GAAATAACCATGAAA TTCAGCT TGG AGCTGAA AAACTCAAATAAATC TERM 86 107145 - 107131 - g 73 -4.4 -4.93454 | overlap 107120 107126 CAAATAAATATAAAA TATTTA ATA TAAATA AAAACCCTAATATTG TERM 87 108507 - 108493 - g 74 -5.8 -4.66163 | opp_overlap 108492, overlap 108497 108500 AGGTTGATTTAAAAA TGAATT ATA AATTCA AAATTTATGAATCAG TERM 88 108567 - 108546 - g 75 -2.3 -5.5074 | overlap 108547 GAACTGAATAAAAAA CCATTGGAA TCAA TTTCAATGA GGCCTTTCGAGATAA PTO0091 105747 - 108605 + | alpha-mannosidase PTO0092 108647 - 110584 + | alpha-glucosidase TERM 89 111303 - 111319 + G 70 -7.9 -3.62046 | opp_overlap 111306 GACCGTTTTTGCAAT GCAGGGC TTT GGCCTGC TTCTTGGAGCCGTCA TERM 90 111608 - 111618 + G 81 -4.6 -5.35815 | overlap 111591 TTTTGATAGGAACTG CCGG AAG CTGG TTTTTATTTGATATG PTO0093 110833 - 112224 + | phosphate transporter PTO0094 112312 - 112920 + | hypothetical protein PTO0095 112936 - 113883 + | ABC-type multidrug transport system, ATPase component TERM 91 113940 - 113955 + G 70 -7.6 -3.65522 | GTTAATACAGACCCT GGAACA TTAA TGTTCC TTGTTGCCATGCCTG PTO0096 113880 - 114644 + | ABC-type multidrug transport system, permease component TERM 92 114834 - 114849 + G 70 -2.6 -5.03747 | gap 1, opp_overlap 114834, overlap 114837 CCTTACATTTATAAA TGCGCAT TTC ATGC-CA TTTTTTAGGGCGTTT TERM 93 115213 - 115202 - g 71 -3.6 -4.95547 | overlap 115204 GGTACAATAATAAAA CGGC AAAT GCCA TTGCAATAATTACCG PTO0097 114781 - 115275 + | hypothetical protein TERM 94 115461 - 115485 + G 85 -11.5 -3.55761 | opp_overlap 115461 115464 CATGCTATTAATGAA TGATCCAGATG CAC CATCTGGAACA TTTACACACTGGATA TERM 95 115485 - 115461 - g 85 -11.5 -3.40371 | opp_overlap 115461, overlap 115464 CATGCTATTAATGAA TGATCCAGATG CAC CATCTGGAACA TTTACACACTGGATA TERM 96 115482 - 115464 - g 81 -11.8 -2.85896 | opp_overlap 115461, overlap 115461 GCTATTAATGAATGA TCCAGATG CAC CATCTGGA ACATTTACACACTGG PTO0098 115333 - 115770 + | ATP/GTP binding protein TERM 97 115807 - 115825 + F 81 -5.4 -5.16206 | overlap 115809 CTTTATATTATATCT TTCATTTT AGT AAAATGGA TTTTTATATTAATTT PTO0099 116032 - 117615 + | hypothetical protein PTO0100 117819 - 119048 + | transporter PTO0101 119127 - 119609 + | hypothetical protein TERM 98 119633 - 119618 - T 78 -3.4 -5.68438 | opp_overlap 119618 119619, overlap 119619 TGATTAAATAAAAAA TTAAAT TATA ATTTAA TTTATGATATACCAT PTO0102 120768 - 119635 - | extracellular protein TERM 99 120587 - 120605 + g 79 -7.5 -4.2535 | TCTCCGGAGATCGTT TCATTGC TCTGT GCAATGA TTTTAGCTGTCATAT TERM 100 120738 - 120750 + g 70 -4.8 -4.68846 | opp_overlap 120738 CGACCACAACAAGGA GCAC AATAA GTGC TTTTAATTTATTGGT TERM 101 120847 - 120837 - R 78 -2.6 -5.85425 | opp_overlap 120837 120843, overlap 120843 120844 TAAATAAATAAAAAA TAAA AAG TTTA ATTTATTAAAAAAAT TERM 102 120869 - 120843 - R 77 -2.4 -5.84011 | opp_overlap 120837 120843, overlap 120837 120844 AATAAAAAATAAAAA GTTTAATTTATT AAA AAAATATTAAAC TTAATCATAAAAAAA PTO0103 122593 - 120938 - | urocanate hydratase TERM 103 122563 - 122575 + g 70 -7.7 -3.62607 | opp_overlap 122562, overlap 122560 TATTCAATATATTAC CATGC GGT GCATG TATATTTTTATGATC PTO0104 122701 - 123315 + | extracellular protein PTO0105 124489 - 123305 - | imidazolonepropionase TERM 104 124351 - 124367 + g 91 -7.3 -5.27206 | overlap 124344 124343 CCATATTTGATGCAT CAATGGC ATC GTCATTG TTTTTATTATCTGTA PTO0106 124577 - 125473 + | formimidoylglutamase hutH 126956 - 125463 - | histidine ammonia-lyase TERM 105 126623 - 126599 - G 75 -6.5 -4.43681 | opp_overlap 126604 TATTTAACATGAAAA TCAAACGATCT ATA AGATCAATTGA TACTCCAGAGAAACC PTO0108 128316 - 126994 - | cobyrinic acid a,c-diamide synthase PTO0109 129289 - 128303 - | cobalamin biosynthesis protein CbiG TERM 106 128641 - 128629 - G 70 -4.9 -4.62302 | CAACAGCGTTAAAAA GATTA TTA TAATC TGCATCACTTGAAAA PTO0110 130311 - 129286 - | cobalamin biosynthetic protein CbiD TERM 107 129870 - 129890 + g 75 -8.3 -3.77111 | TTTTTAATGCGACCT TATCGCCTC CGG GAGCCGATA TTATAATTTTTAATC PTO0111 130891 - 130304 - | precorrin-8X methylmutase TERM 108 130467 - 130477 + gr 95 -8.2 -5.06451 | opp_overlap 130466, overlap 130439 GCTATGACAAGCGAT GGCC TTA GGCC TTTTTTCACCTCCTC PTO0112 131618 - 130854 - | precorrin-6X reductase TERM 109 131841 - 131825 - H 70 -2.4 -5.52384 | opp_overlap 131831 131840, overlap 131827 131831 131833 GGTTTATTAAAAAAA TATAAT TAGTT ATTATA AATAACCATTTATGG PTO0113 131853 - 132443 + | SAM-dependent methyltransferase PTO0114 132468 - 132785 + | hypothetical protein PTO0115 133131 - 132778 - | transcriptional regulator PTO0116 133306 - 134397 + | O-succinylbenzoate-CoA synthase PTO0117 134477 - 135850 + | hypothetical protein PTO0118 136500 - 135847 - | isochorismatase PTO0119 136574 - 137224 + | hypothetical protein TERM 110 137246 - 137231 - f 82 -3.4 -5.96219 | CAGCTATAAAAAAAA TAATTA GCAA TAATTA TATACATTAATATGC TERM 111 137759 - 137781 + G 70 -8.6 -3.20617 | overlap 137764 TTAAAAAAGGATGTT TCAAGGATAT CTA ATATCTTTGA TGTTGAATTTGCCAT PTO0120 137258 - 137866 + | SAM-dependent methyltransferase TERM 112 138035 - 138060 + F 74 -9.3 -3.09492 | opp_overlap 138040 TTTTTAAATTATCCA TCATATTTAAT AAAA ATTAAATATGA TCTTGCAATTCAAAA TERM 113 138119 - 138109 - g 79 -2.4 -5.58522 | TAGAGAAAATAAAAA GGGC AAG GCTC AATGAGATAATGAAT PTO0121 138057 - 138455 + | thioredoxin TERM 114 138551 - 138539 - g 70 -9.1 -3.07192 | opp_overlap 138539 AATCTTTTCAACACA CACCC AAG GGGTG TTGTTTATAATGAAA TERM 115 138539 - 138551 + G 79 -9.1 -4.11183 | opp_overlap 138539 AATCTTTTCAACACA CACCC AAG GGGTG TTGTTTATAATGAAA PTO0122 138443 - 139027 + | putative cytoplasmic protein PTO0123 139742 - 139029 - | purine nucleoside phosphorylase TERM 116 139090 - 139101 + g 81 -4.4 -5.38549 | TTTTCAGATATCTCT GATG CATC CATC TTTTTATTGTTTAAA PTO0124 140505 - 139858 - | hypothetical protein TERM 117 140741 - 140727 - g 79 -2.2 -5.56568 | overlap 140729 AGATCATTAAAAAAA TATTAT TAT ATAACA GATGAGGGGAAAAAG TERM 118 140957 - 140947 - g 76 -4 -5.28983 | opp_overlap 140947 140956 TGGAAAAGATAAAAA TGAT TAG ATCA TGCCTTGAGAATCCC pheS 140553 - 141992 + | phenylalanyl-tRNA synthetase subunit alpha PTO0127 144023 - 142749 - | transporter PTO0126 142062 - 142805 + | hypothetical protein PTO0128 146389 - 144053 - | DNA polymerase II TERM 119 144981 - 145001 + g 80 -2.5 -5.5208 | overlap 144982 TACTCTTTTTCCTCG CCGGATGAG CTC TTCATCTGC TTTTTTATATTGTCA TERM 120 146405 - 146418 + r 71 -2.5 -5.50723 | TAATTTATAAGGTTA TATTT AAAT AAATA TTTTTCTTTTGATAA PTO0129 147015 - 146506 - | nicotinamide-nucleotide adenylyltransferase dcd 147501 - 147070 - | deoxycytidine triphosphate deaminase PTO0131 148852 - 147485 - | allantoin permease family protein TERM 121 149780 - 149770 - g 71 -6.8 -4.15106 | TATGAACCTTGAAAA CCTC ATT GAGG GTAAACGCTATTTTA PTO0132 149219 - 149869 + | polyketide cyclase TERM 122 150143 - 150158 + G 72 -4.8 -4.7078 | opp_overlap 150143 TACTTCTTGTAATAA TTCTTT ACTC AAAGAA TTTTTACCTGCTTGA PTO0133 150109 - 150621 + | hypothetical protein PTO0134 150618 - 151133 + | hypothetical protein PTO0135 154970 - 151353 - | serine/threonine protein kinase TERM 123 153654 - 153687 + g 88 -3.3 -5.74288 | gap 1, overlap 153665 ATAGTTTATATCGTC TATTTCCAT-GAGTAC CGG GTACTCAATTGACATA TTTTTTATTATTTCT TERM 124 154934 - 154950 + g 73 -8.1 -3.56594 | opp_overlap 154937, overlap 154937 CGCCAAGCTTTTTAA TAACAGA ATA TCTGTTA TTTCCAAAAGTTTCA TERM 125 155224 - 155237 + r 74 -5.3 -4.78107 | opp_overlap 155224 AATTAAATCTAATGA GGATA ATTT TATCC TTTTTGCTGCTGGTA PTO0136 156763 - 155450 - | prenyltransferase TERM 126 157374 - 157395 + G 77 -5.9 -4.7078 | overlap 157376 AGGCATATTTACAGG TTTGATGGC ATCT GCCATTAGA TTTTTGCATCATTCC PTO0137 156835 - 157662 + | prenyltransferase PTO0138 159237 - 158020 - | transporter PTO0139 160693 - 159317 - | amino acid permease TERM 127 160840 - 160871 + H 79 -4 -5.75599 | gap 1 ATTATTGATTTTATA TAAATTAAGGATAGC ATG GCT-TTTTTAATTTA TTTTTTTATCATTTA TERM 128 161017 - 161001 - H 70 -3.7 -5.1244 | overlap 161004 TTAGCAAGATAAAAA TAATGCA TAA TGCAGTA TAAAAGCATTGGCAT TERM 129 161014 - 161004 - H 70 -5.4 -4.63863 | overlap 161001 GCAAGATAAAAATAA TGCA TAA TGCA GTATAAAAGCATTGG PTO0140 161010 - 161585 + | hypothetical protein PTO0141 162867 - 161587 - | tryptophan synthase subunit beta TERM 130 162558 - 162587 + g 75 -3.1 -5.23765 | gap 1 TTTTATGCGATCCGG TATATGTGTAAGAT TCC ATCTT-CATGTATA TTTTTATATTATTTC PTO0142 163334 - 162993 - | hypothetical protein PTO0143 163492 - 164025 + | peptide methionine sulfoxide reductase PTO0144 164744 - 164037 - | hypothetical protein PTO0145 165977 - 165009 - | potassium channel protein TERM 131 167260 - 167237 - g 77 -6.6 -4.63486 | ATGCTCGCAATAAAA CTCGGCGGCT CAGT ATCCGGCGAG CATGGCATAGGAAAA PTO0146 166052 - 167404 + | (S)-2-hydroxy-acid oxidase chain D PTO0147 167397 - 168596 + | (S)-2-hydroxy-acid oxidase, iron-sulfur chain PTO0148 169572 - 168583 - | mannonate dehydratase PTO0149 170434 - 169736 - | aspartate racemase TERM 132 170617 - 170606 - g 79 -3.6 -5.42131 | GAACGATATAAAAAA CAGC AGGG GCCG GCTCTTTACATATTT TERM 133 170723 - 170693 - g 71 -8.5 -3.42366 | gap 1, opp_overlap 170700 170701, overlap 170695 170699 CCTAAAATTTTATAA TAGAAATGGCATGG ATTA CCATG-CATTTCCA AGCACGTTAAAGATT TERM 134 170721 - 170695 - g 72 -8.9 -3.27721 | gap 1, opp_overlap 170700 170701, overlap 170693 170699 TAAAATTTTATAATA GAAATGGCATGG ATTA CCATG-CATTTC CAAGCACGTTAAAGA PTO0150 170520 - 171887 + | glutamate decarboxylase PTO0151 172828 - 171878 - | cysteine synthase TERM 135 172027 - 172044 + g 80 -6.3 -5.11063 | overlap 172028 GTATACCCTCATTTT TTGCAAG TGCC CTTGCAG TTTTTATTGCCTCAT TERM 136 172028 - 172043 + g 70 -7.6 -3.65554 | overlap 172027 TATACCCTCATTTTT TGCAAG TGCC CTTGCA GTTTTTATTGCCTCA PTO0152 173826 - 172888 - | ATPase of the PP-loop superamily PTO0153 174340 - 173861 - | hypothetical protein PTO0154 174495 - 175307 + | universal stress protein PTO0155 175943 - 175308 - | potassium-transporting ATPase subunit C PTO0156 177916 - 175937 - | potassium-transporting ATPase subunit B TERM 137 176554 - 176586 + g 78 -5.6 -5.13344 | gap 1 ATGCAAAGTAAGCGG CCGTTA-CCTCATCG TCGC CGGTGAGCATGACGG TTTTTATATTCATCT TERM 138 177833 - 177854 + g 76 -3.7 -5.26316 | opp_overlap 177850 TATAACCATGGATAT CTCTGTTAT AAAC ATAACCGGG TTTTTTATCAAATAC PTO0157 179655 - 177925 - | potassium-transporting ATPase subunit A TERM 139 178457 - 178443 - G 70 -2.8 -5.03405 | opp_overlap 178444, overlap 178444 AAGACGATATAAAAA CTGTGA ATA TCACAT ATGTAAATATATTTA PTO0158 179919 - 183059 + | TPR repeat-containing protein PTO0159 183063 - 183674 + | membrane metalloprotease PTO0160 183721 - 184644 + | heat shock protein HtpX TERM 140 185820 - 185837 + G 73 -8.5 -3.56366 | opp_overlap 185819 GAAGGATAGAACCAT CAAATGC CTTT GCATTTG TTTCCCCGGGTTGTT PTO0161 184691 - 186910 + | thermopsin precursor PTO0162 188388 - 186925 - | permease PTO0163 188588 - 189403 + | transporter PTO0164 191407 - 189392 - | copper transporting ATPase TERM 141 191413 - 191433 + r 71 -2.5 -5.48303 | overlap 191415 CAACAGGCATTTTAT CACCTTATA TAT TTTAAGGGG TTTTTTTCGAATTCT PTO0165 193087 - 191651 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PTO0166 193981 - 193133 - | hypothetical protein PTO0167 194077 - 195411 + | amino acid permease PTO0168 196578 - 195400 - | isocitrate dehydrogenase TERM 142 195819 - 195829 + g 72 -5.4 -4.58859 | GGAACATGTTATCCG CGAT TAT ATCG TTTATTATTATCTTT TERM 143 196422 - 196434 + g 84 -6.3 -5.28176 | CAAGGAGGATCTCCT TCCAT GCT ATGGA TTTTTTCTCCATGGC PTO0169 197685 - 196588 - | 2-methylcitrate-synthase PTO0170 198529 - 197675 - | methylisocitrate lyase PTO0171 199799 - 198522 - | 2-methylisocitrate synthase PTO0172 199872 - 200798 + | acetamidase/formamidase family protein TERM 144 200925 - 200915 - g 86 -8.2 -4.60292 | opp_overlap 200912 200911 200915 TATAATAATAAGAAA CGCC GGC GGCG TAATCTATGATATAA TERM 145 201195 - 201183 - g 83 -7.7 -4.64844 | opp_overlap 201187 201192, overlap 201187 201192 201193 TTTATAGATACAAAA GCCAT AGA ATGGC CTGCCAGGAGGCCGT PTO0173 200838 - 201341 + | hypothetical protein PTO0174 202448 - 201690 - | dihydroorotate dehydrogenase electron transfer subunit PTO0175 203326 - 202433 - | dihydroorotate dehydrogenase 1B PTO0176 207183 - 203356 - | DNA helicase TERM 146 203670 - 203686 + g 70 -5.9 -4.2338 | CCCTGTATATGTAAT CAATGAT CAT ATCGTTG TTCTTTATCTTCATA PTO0177 208224 - 207238 - | magnesium-chelatase subunit ChlI TERM 147 207511 - 207521 + g 79 -8.2 -4.0896 | GAGCCTTAGAGCATC CGCC AGT GGCG TTTTCCCGGAGCTTT TERM 148 207617 - 207638 + g 71 -8.1 -3.4404 | gap 1, opp_overlap 207616 207621, overlap 207617 207621 TGTGTTCCGGAGAAG GATACAAGGG ATA CCCTTG-ATC TCTTTACATATGCCT TERM 149 207635 - 207621 - G 75 -10 -2.96274 | opp_overlap 207617 207617 207621, overlap 207616 TTCCGGAGAAGGATA CAAGGG ATA CCCTTG ATCTCTTTACATATG TERM 150 207621 - 207635 + g 74 -10 -2.56838 | opp_overlap 207621 207616, overlap 207617 207617 TTCCGGAGAAGGATA CAAGGG ATA CCCTTG ATCTCTTTACATATG TERM 151 207965 - 207985 + g 93 -9.9 -4.86773 | TTTTCATTGCCTTTT TGATTATGA ATT TCATAATCA TTTTTGCTGCTTTTA PTO0178 209030 - 208245 - | magnesium-chelatase subunit ChlI PTO0179 212404 - 209027 - | CobN protein TERM 152 210287 - 210297 + g 71 -4 -4.92669 | overlap 210279 AATTCCGGAAATTCT TAGA TTT TCTA TTATTTTTTTATCTG TERM 153 212425 - 212410 - R 71 -4.8 -4.87786 | opp_overlap 212410 212408 CCAACTTCATAAAAA GTAAAA TGTA TTTTAC TATATTAATGATTTC PTO0180 216077 - 212430 - | extracellular solute-binding protein TERM 154 213947 - 213933 - G 70 -7.2 -3.86346 | GGATTCGCCTATAAA TACCAT GGC ATGGTA AACCGGTGTGCCATT TERM 155 215640 - 215652 + g 73 -4.1 -5.11033 | GTTTGTAAAAACGTA TGTGG AAT CCATA TTTTTTCCCGTTATA TERM 156 215723 - 215749 + g 100 -8 -5.21506 | TGTAGCTTACATTTT CATTTGTTCCTG TAA CCGGATCAAATG TTTTTATATTCTTGT PTO0181 218243 - 216210 - | extracellular solute-binding protein TERM 157 216639 - 216622 - G 72 -7 -3.89524 | ACTGGATCGGAGAAA TCTGGC TCCCAG GCCAGA TCAACGAAGTGTGGA TERM 158 218799 - 218818 + G 70 -5 -4.63527 | TATATTCATATTTGG CGGTATTA TACT TAACACCG TTTTTAAGATGATCC PTO0182 218356 - 219177 + | (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase TERM 159 219818 - 219794 - g 83 -7.1 -4.93318 | overlap 219807 CATAAGGGATAAAAA TGCTGCTGAAA AGC TTGCAGCTGCA GGTGCCGATATTATA PTO0183 219174 - 219905 + | geranylgeranylglyceryl phosphate synthase-like protein PTO0184 220796 - 219906 - | cyclase PTO0185 220905 - 221765 + | hypothetical protein TERM 160 222569 - 222544 - g 74 -9.1 -3.69216 | gap 1, opp_overlap 222543 222542, overlap 222542 222545 CCTTGATCTAAAATA CTTTGCC-GAGC ACA GCTCAGGCAAAA AGTTCATGGGTCTCG TERM 161 222568 - 222545 - g 76 -10.4 -2.81208 | gap 1, opp_overlap 222543 222542, overlap 222544 222542 CTTGATCTAAAATAC TTTGCC-GAGC ACA GCTCAGGCAAA AAGTTCATGGGTCTC PTO0186 221768 - 222784 + | methionine synthase PTO0187 226018 - 222788 - | membrane associated serine protease TERM 162 225063 - 225075 + g 81 -10.5 -3.53811 | ACGCCGTTAGCTATT CCGCC CCA GGCGG TTTCAACAGGCTCGC PTO0188 226193 - 226738 + | hypothetical protein PTO0189 227759 - 226740 - | RNA-binding protein TERM 163 227545 - 227563 + g 75 -2.4 -5.46706 | overlap 227547 TTATCTGTAAATGGC TGGAAATC AAG GTTTTCTA TTTTTATTTTGACCT TERM 164 227604 - 227619 + g 73 -4 -5.04249 | overlap 227605 TCTCTCTGTGCTCTT TGATCT CTCA AGATCG TTTCTTTTTTCCAGG PTO0190 228194 - 227766 - | hypothetical protein PTO0191 228747 - 228199 - | aromatic acid decarboxylase PTO0192 229082 - 228747 - | Mov34/MPN/PAD-1 family protein ppnK 229908 - 229096 - | inorganic polyphosphate/ATP-NAD kinase PTO0194 229994 - 231253 + | adenylosuccinate synthetase TERM 165 231722 - 231734 + G 75 -7.7 -4.05446 | overlap 231718 CGGTGCAGGTCCGGA GGCAA TAC TTGCC TTTGTCCTTGGGGCA TERM 166 232285 - 232302 + G 79 -11.3 -2.90309 | opp_overlap 232282 232280, overlap 232280 232288 TGAAGGAGAAGATCC CAAGGGC GATA GCCCTTG TAATGTTATTTGAAA TERM 167 232832 - 232851 + G 73 -9.2 -2.96991 | CATCATTGCACCGCT GGCCACCG GTGC CAGTGGCC TAATTGTCTTCTGGA PTO0195 231525 - 233213 + | amino acid transporter PTO0196 233276 - 233788 + | hypothetical protein PTO0197 235104 - 233785 - | quinoprotein dehydrogenase PTO0198 235508 - 235152 - | hypothetical protein PTO0199 235874 - 235617 - | hypothetical protein PTO0200 236178 - 235879 - | AsnC family transcriptional regulator PTO0201 236255 - 237070 + | ABC transporter ATP-binding protein PTO0202 237067 - 238599 + | hypothetical protein TERM 168 238783 - 238770 - g 71 -6.7 -4.05714 | ATGGGCAAGCAGAAA TCCTG GGAT CAGGA GGACTGGTACTACAC PTO0203 238644 - 239093 + | 30S ribosomal protein S19e PTO0204 239115 - 239456 + | hypothetical protein rpl39e 239459 - 239614 + | 50S ribosomal protein L39e PTO0206 239624 - 239893 + | 50S ribosomal protein L31e PTO0207 239900 - 240553 + | translation initiation factor IF-6 pyrE 241045 - 240545 - | orotate phosphoribosyltransferase TERM 169 241985 - 241973 - g 85 -10.5 -4.053 | ATGAGGGCATAGAAA CCGGC TGG GCCGG AGAGATAAGCCTTGA TERM 170 242288 - 242300 + G 70 -9.1 -3.12803 | opp_overlap 242287, overlap 242282 242286 GTGGCTACAGCATAG GAGCC CTC GGCTC TGTTGGGTATCCGTC PTO0209 241123 - 244971 + | membrane associated serine protease TERM 171 245508 - 245492 - g 78 -9.4 -3.69506 | overlap 245490 GATCTTAAAATAATA GCGCCT GGCAT AGGCGC CCAGGGTGGAAGCAT PTO0210 245015 - 245638 + | orotidine 5'-phosphate decarboxylase PTO0211 245663 - 246406 + | putative signal peptide peptidase SppA TERM 172 246749 - 246772 + G 84 -9 -4.48333 | gap 1, overlap 246750 AATGGAAACTGCCCT TCCAAGG-TTC AAT GAAGCCTTGGA TTTTGGTTCCTATCT PTO0212 246408 - 247373 + | hypothetical protein PTO0213 247769 - 247356 - | hypothetical protein PTO0214 248692 - 247745 - | dipeptide ABC transporter Dpp1, ATP binding protein TERM 173 247969 - 247982 + g 75 -2.4 -5.36441 | TGTATGGATGCTTTG GGTT CTCTAT AACC TTTTTTGTATCACCG PTO0215 249653 - 248685 - | dipeptide ABC transporter Dpp1, ATP binding protein PTO0216 250604 - 249663 - | dipeptide ABC transporter Dpp1, permease protein PTO0217 251629 - 250601 - | dipeptide ABC transporter Dpp1, permease protein TERM 174 250921 - 250947 + g 77 -9.4 -3.42459 | TAAAGTAATCTGATT CCATGGCATCAA GCA TTGAGGCCCTGG TTAATCTTGTAACTA PTO0218 251805 - 252167 + | hypothetical protein TERM 175 252610 - 252626 + G 71 -4.4 -4.8048 | opp_overlap 252610 TCAGGAGTTCAGAAG CCTTGA GAGTG TCAGGG TTTTTGATATAACGC PTO0219 252167 - 252709 + | putative NTPase TERM 176 252710 - 252728 + F 79 -6 -5.01535 | opp_overlap 252711, overlap 252712 252713 GAAGAATCAATATAA TGCCATGT AAA ACATGGTG TTTTTATGATTATAA TERM 177 252712 - 252726 + F 83 -8.6 -4.12226 | opp_overlap 252711, overlap 252710 252713 AGAATCAATATAATG CCATGT AAA ACATGG TGTTTTTATGATTAT PTO0220 252734 - 253732 + | N(2),N(2)-dimethylguanosine tRNA methyltransferase PTO0221 254182 - 253721 - | hypothetical protein PTO0222 254922 - 254179 - | competence damage-inducible protein A TERM 178 254528 - 254544 + g 74 -10.1 -2.73203 | opp_overlap 254520 254521 254525, overlap 254527 254530 TTTACAAGGACACCG GGTGCCG TTC CGGCATC GTTCCTTATTGGTAC PTO0223 255278 - 254928 - | hypothetical protein PTO0224 256289 - 255354 - | sugar phosphate nucleotydyl transferase PTO0225 256610 - 258142 + | NAD-dependent aldehyde dehydrogenase TERM 179 258251 - 258267 + F 95 -9.5 -4.63218 | TATAAAGATACCTGG TCAATGG ATG CCATTGA TTTTGTTAAAAAGAA TERM 180 258523 - 258511 - g 70 -4.8 -4.64024 | opp_overlap 258511 258513 AAATGAAATAAGAAA GAGC GGTGA GCTC TTTAAAAGGGCATGG PTO0226 258254 - 259243 + | tyrosyl-tRNA synthetase PTO0227 259244 - 259516 + | hypothetical protein PTO0228 260529 - 259513 - | flap endonuclease-1 TERM 181 259741 - 259764 + g 81 -3.2 -5.64274 | TATATTTTTTATTTT TATAACGCTG TATA TATCGTTATA TTTTTTTATCAATGA radB 261220 - 260534 - | DNA repair and recombination protein RadB PTO0230 262027 - 261263 - | aldose dehydrogenase TERM 182 261992 - 262004 + g 85 -4.9 -5.61881 | GCCCTTTGAACCACC TGTTA CTA TAACA TTTTTATTTTTAAGG TERM 183 262501 - 262521 + G 81 -9.7 -3.78233 | opp_overlap 262496 262499 GATACAAAACCATTG GCATTGCAG CAC CGGCAATGC TTTACATATTAATAT PTO0231 262191 - 263459 + | transporter TERM 184 263747 - 263729 - g 90 -4.6 -5.77853 | AATTTTTAAAAAAAA TGTGGATA TTA TATCAACA GACAGCTTTCTTAAG PTO0232 263466 - 264293 + | pantothenate kinase PTO0233 264477 - 264773 + | hypothetical protein TERM 185 265158 - 265140 - g 78 -11 -2.66183 | opp_overlap 265140, overlap 265139 GGATATAATAGTAAG CTCCGGCA AAA TGCCAGAG TTCGGTCTGGATTCC TERM 186 265140 - 265158 + G 70 -8.8 -3.14522 | opp_overlap 265140 265139 GGATATAATAGTAAG CTCCGGCA AAA TGCCAGAG TTCGGTCTGGATTCC PTO0234 264856 - 265299 + | hypothetical protein TERM 187 265806 - 265793 - g 72 -5.3 -4.652 | AAACGATTTTAAAAA CTATG AATT CATAG AGATAAAGAGGTGCA PTO0235 265332 - 265880 + | methyltransferase TERM 188 266018 - 266008 - g 75 -8.2 -3.79113 | opp_overlap 266008 266007 266005 ATCTGCCCATAAGAA GGCC TCA GGCC ATGGTTTTTATGTTC TERM 189 266139 - 266121 - g 76 -7.4 -4.35561 | TAACAAATAAAAAGA GCGAGGTT GGT AACTTCGC ATTCACAACATTAAC TERM 190 266388 - 266374 - g 73 -2.8 -5.34309 | opp_overlap 266374 AGTATTAAATAAAAA GAGAAA GGA TATCTC ATTTAAGAAGAGCAA PTO0236 265868 - 266947 + | GTP binding protein TERM 191 267064 - 267053 - g 77 -5.8 -4.8048 | GGGTTATATCAAAAA CCGT GATG ACGG AACAGTTGAGGCCGT PTO0237 266958 - 267203 + | acylphosphatase PTO0238 268405 - 267200 - | threonine dehydratase TERM 192 268352 - 268342 - G 81 -6.8 -4.8622 | TCTTTGAATGAAAAA CAGG CGT CCTG TGCAGATACCTTGAT PTO0239 271100 - 268458 - | chromosome segregation protein TERM 193 269447 - 269461 + g 83 -8.6 -4.30231 | overlap 269452 TTAGGTATGATGTTC TCCTTG AAT CAAGGA TTTCTATTGATTCTT TERM 194 270221 - 270240 + g 73 -9.4 -2.93765 | opp_overlap 270220 AATCATTTATGTAAT TCCTGTTT TTAT AAACAGGA TCGTTAATTATTTTC TERM 195 270782 - 270795 + g 74 -5.3 -4.78477 | GATCAAAACCCTCGG CAATG ATCT CATTG TTCTTTTTTATATAT PTO0240 272219 - 271107 - | DNA repair protein TERM 196 271530 - 271544 + g 70 -2.8 -5.07053 | TATATCCACGAGGTT TACAGA TTT TCCGTA TTTTTTAAAATGATT PTO0241 273766 - 272219 - | hypothetical protein PTO0242 274715 - 273726 - | hypothetical protein TERM 197 274718 - 274699 - GR 79 -6.4 -4.79174 | opp_overlap 274698 ATGTAATTAATAAAA TCCGTGTA TGTT TCCACGGA ATGCTATTTGTTAAT PTO0243 275822 - 274749 - | zinc metalloprotease TERM 198 275221 - 275205 - G 79 -8.1 -4.16016 | GTACTGTGCAAGAAA CATCAAT GGT ATTGATG CAAGAAAGCCTGCTA TERM 199 275318 - 275304 - G 74 -5.6 -4.78326 | opp_overlap 275304, overlap 275305 CCTTAAAGAAACAAA TGCACC AAA GGTGCC TATAATATATGGAAA TERM 200 275317 - 275305 - G 74 -9.1 -3.45911 | opp_overlap 275304, overlap 275304 CTTAAAGAAACAAAT GCACC AAA GGTGC CTATAATATATGGAA TERM 201 275960 - 275970 + H 71 -6.8 -3.98083 | ATCCGAGGCCCATTA TGGC GTG GCCA TTTATAGGTTCCGTG rps15p 276751 - 277191 + | 30S ribosomal protein S15P TERM 202 277574 - 277595 + G 72 -7.3 -3.96624 | gap 1, opp_overlap 277567 277574 CAATGGAACGACAGA GGCCTGTGGT GCA ACCAT-GGCC TTTCTCATGGCACTA PTO0245 277188 - 278522 + | single-stranded-DNA-specific exonuclease RecJ PTO0246 278561 - 279733 + | amidohydrolase TERM 203 280220 - 280204 - g 75 -8.1 -3.75093 | overlap 280202 CACAGAAGATAAATA TATACGA GGA TCGTATA ATAAAATATATAATA PTO0247 279714 - 280643 + | muramoyltetrapeptide carboxypeptidase PTO0248 280672 - 281934 + | glutamate-1-semialdehyde aminotransferase hemC 281925 - 282773 + | porphobilinogen deaminase hemD 282757 - 283425 + | uroporphyrinogen-III synthase PTO0251 284091 - 283531 - | putative RNA-processing protein PTO0252 284851 - 284084 - | serine/threonine protein kinase PTO0253 285155 - 284829 - | translation initiation factor IF-1A TERM 204 285938 - 285949 + G 74 -5.8 -4.62069 | opp_overlap 285938 GAATTCACGGATATA GCCA GCGG TGGC TTTTTGCCATACGGA PTO0254 285281 - 287044 + | amino acid permease PTO0255 287074 - 287724 + | hypothetical protein nusA 288156 - 287725 - | transcription elongation factor NusA-like protein PTO0257 289675 - 288149 - | DNA-directed RNA polymerase subunit A'' PTO0258 292332 - 289672 - | DNA-directed RNA polymerase subunit alpha TERM 205 292026 - 292043 + g 74 -5.5 -4.74052 | TCCTGCCACAGACCT TGCAGGA TGAA TCCAGCA TTGTTTTTATTTCCT PTO0259 295913 - 292329 - | DNA-directed RNA polymerase subunit beta TERM 206 293657 - 293673 + g 75 -8 -4.05714 | opp_overlap 293648, overlap 293648 TATAATTTGCCGCCG GCAGTC CTATT GACTGC TTTGTCATTGCAGAT rpoH 296177 - 295914 - | DNA-directed RNA polymerase subunit H TERM 207 297271 - 297249 - g 72 -4.9 -4.7339 | gap 1, overlap 297253 AATAAACGGGAAAAA CATAGGCCCT TCTC AGAGCC-ATG CAAGGAATCCGGCGT PTO0261 296386 - 297402 + | translation initiation factor IF-2B subunit alpha PTO0262 298668 - 297388 - | tryptophanyl-tRNA synthetase TERM 208 298076 - 298098 + g 83 -5.4 -5.47218 | opp_overlap 298062, overlap 298077 ACACCAACAGGTACT ATCGTTGGCC TTG GGCCGCCGAA TTTTTTTAACTGCGA TERM 209 298077 - 298097 + g 79 -8.9 -3.87608 | opp_overlap 298062, overlap 298076 CACCAACAGGTACTA TCGTTGGCC TTG GGCCGCCGA ATTTTTTTAACTGCG TERM 210 298605 - 298589 - G 83 -3.7 -5.58074 | overlap 298590 TAATGATCAAAAAAA TTATCAG GAG CTGATAT GCCAAATTCCCTCAT TERM 211 298604 - 298590 - G 72 -7.2 -3.93218 | overlap 298589 AATGATCAAAAAAAT TATCAG GAG CTGATA TGCCAAATTCCCTCA PTO0263 299223 - 298843 - | hypothetical protein PTO0264 300596 - 299256 - | mercuric reductase TERM 212 299707 - 299737 + g 74 -4.7 -4.97158 | overlap 299714 TCAAGCTGAAATCTT TGATCGACGCAGT CTCCT GCTGCGTATATCA TTTTATTTGATGTCC PTO0265 300889 - 301701 + | molybdenum cofactor biosynthesis protein A PTO0266 301735 - 302358 + | hypothetical protein PTO0267 302382 - 302570 + | hypothetical protein PTO0268 302574 - 303326 + | glycosyltransferase TERM 213 304232 - 304242 + GF 76 -4 -5.30155 | opp_overlap 304232, overlap 304215 ATGATTTTGCACCAA GAAT ATC ATTC TTTTTTAATTCATCA PTO0269 303367 - 305064 + | methylmalonyl-CoA mutase TERM 214 305102 - 305122 + GF 70 -6.2 -4.05714 | gap 1, opp_overlap 305102 305104, overlap 305106 GCAAAACCGGCAATA GATGGCCAC GACC GTGGC-ATC TTTGTGCTTGCAAAT PTO0270 304982 - 305506 + | methylmalonyl-CoA mutase alpha subunit PTO0271 305475 - 306347 + | LAO/AO transport system kinase ArgK TERM 215 307170 - 307201 + G 85 -9.4 -4.24002 | gap 1, opp_overlap 307181 GCCATGTTTTCCATA CCGGCTGTAAAGGGC ATA GCCTTTGGC-GCCGG TTTTAACCTTTCAAA TERM 216 307292 - 307302 + G 71 -6.8 -4.08216 | opp_overlap 307292 GACCAGGACAAACAA TGCC GGC GGCA TTTTAGGAGGCATAA TERM 217 307302 - 307292 - g 71 -6.8 -4.12254 | opp_overlap 307292 GACCAGGACAAACAA TGCC GGC GGCA TTTTAGGAGGCATAA PTO0272 306456 - 307538 + | chorismate synthase PTO0273 309227 - 307512 - | hypothetical protein PTO0274 310341 - 309262 - | glycosyltransferase TERM 218 309818 - 309796 - G 70 -7 -3.727 | TCCATTATATTTAAA TTCCCCTGAC AAT GTCAATGGAA CATAGTAAATCTTCT PTO0275 311024 - 310338 - | metal dependent hydrolase PTO0276 311683 - 311069 - | DNA binding protein PTO0277 311979 - 311713 - | hypothetical protein PTO0278 313195 - 311981 - | membrane spanning protein TERM 219 313293 - 313281 - H 79 -3.5 -5.69793 | overlap 313270 ATATTAAATAAAAAA TATTT ATA AAATA GTATATCTATAATTA PTO0279 313401 - 314411 + | pyridoxine biosynthesis protein TERM 220 314809 - 314825 + G 100 -8.1 -5.52384 | TGCATCAGAGCTGGG CGTTTTT GAC AAAAACG TTTTTTTAATAACAA TERM 221 315099 - 315113 + G 75 -6.4 -4.37534 | opp_overlap 315078 CATTGATATCTGTTG TTGCCG GAG TGGCAA TTTTAATGTAGATTT PTO0280 314405 - 315124 + | hypothetical protein PTO0281 315191 - 315892 + | electron transfer flavoprotein beta-subunit PTO0282 315889 - 316758 + | electron transfer flavoprotein alpha subunit PTO0283 316797 - 318749 + | acetyl-coenzyme A synthetase PTO0284 318750 - 319328 + | transcriptional regulator PTO0285 319631 - 319320 - | hypothetical protein PTO0286 320012 - 319668 - | hypothetical protein TERM 222 319926 - 319944 + g 76 -7.4 -4.20749 | GGCCTTTGCGTTGTT CCTTGCAC CAA GTGCAAAG TTTATTGCCATGTTC PTO0287 320098 - 320865 + | hypothetical protein PTO0288 320868 - 321671 + | putative serine/threonine protein phosphatase TERM 223 322642 - 322624 - g 86 -11.8 -3.72576 | CGTTTCTGCAGGAAA CCTTGTTG AGG CAACAAGG AAGATGGACAAGATA PTO0289 321680 - 322819 + | hypothetical protein PTO0290 325051 - 322820 - | hypothetical protein TERM 224 323986 - 324000 + g 78 -5.7 -5.14682 | opp_overlap 323985 TGATTTTATAATATC CAAGG TATGT CCTTG TTTTATTTATTATAA TERM 225 325980 - 325968 - g 100 -6.3 -5.86465 | AATAATAGAAAAAAA TGCAT TAT ATGCA TAGACGAGGCACATA PTO0291 325155 - 326789 + | hypothetical protein PTO0292 330445 - 326795 - | hypothetical protein TERM 226 328599 - 328609 + g 71 -6.8 -4.11692 | AGGTGCTTTCCATAG CCAG TTA CTGG TTTTACCACTGAATA TERM 227 330404 - 330423 + g 72 -5.8 -4.50106 | gap 1, opp_overlap 330400 330408, overlap 330404 330406 GGCTGATAGGACCAT G-ATAGCCA CCA TGGCTATGC TTATTATTTTTTTAT TERM 228 330406 - 330420 + g 70 -8.6 -3.14401 | opp_overlap 330400 330408, overlap 330404 330404 CTGATAGGACCATGA TAGCCA CCA TGGCTA TGCTTATTATTTTTT PTO0293 332210 - 330555 - | hypothetical protein TERM 229 331138 - 331154 + g 72 -5.1 -4.72497 | opp_overlap 331140, overlap 331140 ACCTCATTGTTATTT AACGATG ATA CATCGTA TTTTATTAATACATA TERM 230 331140 - 331152 + g 74 -7.7 -3.97413 | opp_overlap 331140, overlap 331138 CTCATTGTTATTTAA CGATG ATA CATCG TATTTTATTAATACA TERM 231 331628 - 331642 + g 85 -10 -4.16251 | CTGTTACATTATCAG GGAACG TAA CGTTCC TTTTCAGGCTTGTAT PTO0294 334679 - 332235 - | hypothetical protein TERM 232 334497 - 334482 - G 81 -3.2 -5.54192 | ATGAACCGAAAAAAA TGAACC ACCA GGTACA GTATTAACAAAAAAT PTO0295 334786 - 335880 + | glycosyltransferase PTO0296 336671 - 335865 - | hypothetical protein PTO0297 338209 - 336707 - | heteropolysaccharide repeat-containing protein TERM 233 336759 - 336739 - G 76 -5.6 -4.85433 | ATATAAATCTAAAAA CTTTAATA TTGCC TATTAAAG ACGAGATTAAAATGC PTO0298 339807 - 338653 - | lipopolysaccharide N-acetylglucosaminyltransferase TERM 234 338782 - 338794 + g 74 -4.9 -4.99861 | AAGGGTAGATAGAGC TTCAA ATA TTGAA TTTTTATCATTGATG PTO0299 340432 - 340001 - | hypothetical protein TERM 235 340430 - 340446 + g 84 -4.5 -5.56568 | TCCATATTCTGCCTT CAATATT TTC GATATTG TTTTTTTCCTAATAT PTO0300 340999 - 341319 + | hypothetical protein TERM 236 341592 - 341568 - T 77 -9.4 -3.00786 | TGGAAAAGGTATATA TCTGTGACCT AGATA AAGTCACAGA GAAAATATGTGATAT PTO0301 342458 - 341724 - | glycosyltransferase PTO0302 342706 - 343569 + | glycosyltransferase PTO0303 344798 - 343566 - | lipopolysaccharide N-acetylglucosaminyltransferase TERM 237 345647 - 345635 - g 84 -6.3 -5.18643 | CTAATGAAAATAAAA CCAAA GAA TTTGG AGATAATTCCGAATG PTO0304 344921 - 345988 + | glycosyltransferase PTO0305 346937 - 346608 - | glycosyltransferase TERM 238 346698 - 346686 - G 70 -4.9 -4.58395 | GTCATCGTCCAAAAA TGATA TTA TATCA CCTTTAGATTCATTT TERM 239 346980 - 346954 - R 80 -4.6 -5.36965 | opp_overlap 346954 346956, overlap 346956 GAACACTATAAAAAA TTGAAATAAAAA TAT TTTTTATCTCTA TGTGTTCATGCATTA PTO0306 347637 - 347287 - | hypothetical protein PTO0307 348393 - 349430 + | glucose-1-phosphate uridylyltransferase PTO0308 349435 - 350244 + | dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase PTO0309 351142 - 350894 - | transcriptional regulator TERM 240 351256 - 351297 + H 71 -8.4 -2.99433 | gap 1, opp_overlap 351266 351268, overlap 351258 AATCATAAAAATGGG CATCATGGA-ATATTGATT ATAAA AATCAATATCTCAATGATG TATATAATCTAATTC TERM 241 352109 - 352091 - g 72 -7.4 -3.91858 | GACATATGGCATAAA GGTCATTG TAA CAAGGACC TCAAACAATTTCGGC PTO0310 351597 - 352583 + | dTDP-glucose 4,6-dehydratase PTO0311 353116 - 352580 - | dTDP-4-dehydrorhamnose 3,5-epimerase PTO0312 353920 - 353150 - | dTDP-glucose 4,6-dehydratase PTO0313 354365 - 353961 - | glycosyltransferase PTO0314 355897 - 354974 - | glycosyltransferase TERM 242 355800 - 355824 + g 71 -3.5 -5.09204 | ACCTCATAAAATTCT GCGCTTAAAGT TTG ATTTAGGGCGC TTTTTATTGCCCTGT PTO0315 357031 - 355925 - | glycosyltransferase PTO0316 357585 - 357349 - | hypothetical protein TERM 243 357415 - 357425 + g 71 -4 -4.98857 | CAGTGCATTGCTTGG TGTA AGA TACA TTTTTATAATTGAGT PTO0317 357959 - 357630 - | hypothetical protein PTO0318 358067 - 358621 + | hypothetical protein PTO0319 358596 - 358874 + | hypothetical protein PTO0320 360667 - 358871 - | hypothetical protein TERM 244 361093 - 361081 - g 85 -4.9 -5.53079 | opp_overlap 361081 AAAATACATAAAAAA TGAAA AAT TTTCA CTTTTGCATTATACT PTO0321 360794 - 361822 + | glycosyltransferase PTO0322 361869 - 362237 + | 50S ribosomal protein L18e TERM 245 362508 - 362496 - g 76 -4.1 -5.26119 | overlap 362497 TTCCTAAAAAGAAAA CCCAT GGA ATGGA GGCATTAAAGCGCTG rpl13p 362243 - 362659 + | 50S ribosomal protein L13P rps9p 362652 - 363053 + | 30S ribosomal protein S9P TERM 246 363167 - 363152 - g 82 -8.2 -4.25325 | AGATAATAAATGAAA CCGGGC GCGA GCCCAG GGGCGAGGAAAAGGC PTO0325 363058 - 363276 + | DNA-directed RNA polymerase subunit N PTO0326 364023 - 363466 - | hypothetical protein TERM 247 363560 - 363539 - G 70 -8.7 -3.11316 | TTATTAGTCAATACA CTCCTGGCG ATAT CGCCAAGAA TCAATAATGAAAAAT PTO0327 364382 - 364083 - | glycosyltransferase TERM 248 364146 - 364134 - G 70 -4.9 -4.58395 | GTCATCGTCCAAAAA TGATA TTA TATCA CCTTTAGATTCATTT TERM 249 364632 - 364644 + G 79 -9.1 -4.08216 | ATAGTAATGATAGTT GGCCA GGA TGGCC TTTTCAAGGAGATAA PTO0328 364485 - 365252 + | peptidyl-prolyl cis-trans isomerase PTO0329 365253 - 365960 + | rRNA methylase PTO0330 366015 - 366326 + | hypothetical protein PTO0331 366388 - 367713 + | sugar transport protein PTO0332 367755 - 369236 + | succinate-semialdehyde dehydrogenase [NADP+] PTO0333 371914 - 369257 - | putative surface layer protein PTO0334 372227 - 372859 + | acetyltransferase TERM 250 373098 - 373081 - g 73 -2.7 -5.33331 | gap 1 TAAATATAATAAAAA TTGCGCCC GCG GGG-ACAA GTGCGGACGAATTCA PTO0335 372885 - 373265 + | hypothetical protein PTO0336 374934 - 373267 - | pyruvate kinase TERM 251 373360 - 373378 + g 81 -3.2 -5.60689 | GTACAATAAAAGTAT CTTATTTT CAT AGAATAGG TTTTTTATTGTATCG TERM 252 374653 - 374668 + g 73 -2.6 -5.2291 | GTTGTCATTTTTATT GTATGA TATT TTATAC TTTTTATTATAATCT PTO0337 375039 - 375248 + | hypothetical protein PTO0338 375305 - 376654 + | amino acid permease PTO0339 377417 - 376647 - | 3-deoxy-7-phosphoheptulonate synthase trpC 378147 - 377395 - | indole-3-glycerol-phosphate synthase TERM 253 378148 - 378165 + r 88 -5.7 -5.28755 | opp_overlap 378147 ATCATCAACAATCAT TTTTATG CCTC CATAAAA TTTTTTAATATCTTT PTO0341 378704 - 378150 - | anthranilate synthase component II PTO0342 379815 - 378679 - | anthranilate synthase component I PTO0343 380366 - 379812 - | N-(5'-phosphoribosyl)anthranilate isomerase trpD 381330 - 380356 - | anthranilate phosphoribosyltransferase PTO0345 382054 - 381317 - | tryptophan synthase alpha chain TERM 254 381888 - 381900 + g 76 -4.1 -5.34365 | TCATAGTTCTCATTG CCTAT TCT ATGGG TTTTTCTTATTGTCG PTO0346 383315 - 382056 - | tryptophan synthase subunit beta PTO0347 383432 - 383788 + | hypothetical protein TERM 255 384467 - 384453 - g 70 -5.8 -4.30104 | GAAACCAATAAATAA GTTAAT TTC ATTAAC TGGTAACATAACAGG PTO0348 383827 - 384486 + | triosephosphate isomerase PTO0349 384491 - 385129 + | hypothetical protein PTO0350 385630 - 385373 - | hypothetical protein PTO0351 385866 - 385627 - | hypothetical protein PTO0352 386290 - 385832 - | hypothetical protein PTO0353 386811 - 386287 - | hypothetical protein PTO0354 387193 - 386813 - | hypothetical protein PTO0355 387465 - 387190 - | hypothetical protein PTO0356 390712 - 387698 - | virulence-associated protein E TERM 256 387909 - 387919 + g 83 -5.4 -5.42198 | TCTTTAGAATTTTTC TCTG GAT CAGA TTTTATTTTTTCAAG TERM 257 389823 - 389835 + g 84 -6.3 -5.1971 | overlap 389830 TTTAATGTTGTGTAG CCTTT TAC AAAGG TTTTTGATTTTTCAT PTO0357 391504 - 392793 + | hypothetical protein TERM 258 393379 - 393354 - f 100 -9.1 -5.52023 | overlap 393355 AGCACTAATAAAAAA GTGTTCCAACA GTAC TGTTGGAACAT ATAAACATAAATTTT TERM 259 393378 - 393355 - f 100 -12.6 -3.89587 | overlap 393354 GCACTAATAAAAAAG TGTTCCAACA GTAC TGTTGGAACA TATAAACATAAATTT TERM 260 393655 - 393630 - f 82 -6.9 -4.90918 | overlap 393632 AGAAAACCAATAAAA TACGGCTTTTC CGCC GAAAAACCGAA CGGCCGCCTCTCCCC TERM 261 393653 - 393632 - f 87 -9.5 -4.04459 | overlap 393630 AAAACCAATAAAATA CGGCTTTTC CGCC GAAAAACCG AACGGCCGCCTCTCC TERM 262 394610 - 394596 - g 75 -2.1 -5.48213 | gap 1, opp_overlap 394597, overlap 394597 CAGTGAAAACAAAAA CCAGGA ACCA TCC-GG TATTCCAGCAATTAA PTO0358 394309 - 394830 + | hypothetical protein PTO0359 395068 - 394832 - | hypothetical protein PTO0360 395261 - 395455 + | hypothetical protein TERM 263 395566 - 395589 + G 76 -7 -4.32607 | CTAAGGCTCTATGCC TATAAAAATT ATCT AATTTTTATA TTTATTGCATTTTCA PTO0361 395452 - 395742 + | hypothetical protein PTO0362 397004 - 395745 - | DNA integration/recombination/invertion protein PTO0363 397733 - 397200 - | TetR family transcriptional regulator PTO0364 397827 - 398867 + | C4-dicarboxylate transporter TERM 264 398881 - 398905 + T 100 -5.7 -6.11229 | opp_overlap 398884 398888, overlap 398884 AGATGTTGTTTTATA TCATGAATGCC ATA GGCATACATTA TTTTTTTATTTTAAT TERM 265 398884 - 398902 + T 90 -7.4 -5.04908 | opp_overlap 398884 398888, overlap 398881 TGTTGTTTTATATCA TGAATGCC ATA GGCATACA TTATTTTTTTATTTT PTO0365 401524 - 399014 - | glucoamylase TERM 266 399957 - 399944 - G 79 -8.1 -4.14397 | ATTCCAGAAATTAAA CCTGG TCTG CCAGG TCCCATTGTATGTAT PTO0366 402423 - 401734 - | short-chain alcohol dehydrogenase TERM 267 402139 - 402109 - G 82 -9.2 -4.1964 | opp_overlap 402099 402108 402107 GGCAACATTGTAAAA TGTTAATGCATTAT TTA ATAATGCATCAGCA AATTCCTCTGGATTG PTO0367 402724 - 404196 + | hypothetical protein PTO0368 404244 - 404789 + | hypothetical protein PTO0369 405590 - 404928 - | glutaredoxin related protein PTO0370 405644 - 406393 + | alanyl-tRNA synthetase PTO0371 407474 - 406380 - | serine--pyruvate aminotransferase TERM 268 406435 - 406450 + g 81 -3.3 -5.63645 | TTTACCTCGCTTTCA TCAAC ATAATC GTTGA TTTTTTCTATTTTAA TERM 269 406933 - 406919 - G 74 -10 -2.82775 | overlap 406889 406916 TTGATAGAAAATCGA TGCCTG TAC CAGGCA GGGCGGCTATGTTCT PTO0372 408373 - 407474 - | D-3-phosphoglycerate dehydrogenase TERM 270 407732 - 407746 + g 70 -2.8 -5.01811 | TATTGCATTATCCCT GAGC ATGGATA GCTC TTTTTCATTTAATAC TERM 271 408094 - 408116 + g 82 -8.5 -4.3586 | CAGTTGAGGATCCCG GGGCGTAAA CGATC TTTATGCCC TTTTCCTGTGCATAA PTO0373 408539 - 410167 + | NADH oxidoreductase PTO0374 411753 - 410164 - | O-sialoglycoprotein endopeptidase/protein kinase TERM 272 411553 - 411571 + g 72 -8.8 -3.30007 | overlap 411570 TATTAGATCGAGATC CTCCGGTT TTA AACCGGCG TTATCAAACGATCTT PTO0375 412112 - 411840 - | DNA-binding protein TERM 273 411992 - 412005 + g 72 -9.5 -2.78935 | CGAGATTTATCTTCT GGCCG CTGT CGGCC TGTGATACAACCTCT PTO0376 412792 - 412379 - | AsnC family transcriptional regulator TERM 274 413298 - 413313 + G 73 -4.6 -4.99861 | opp_overlap 413298 GCACAATCAGCAACA CAGACC GTCA GGGCTG TTTTTATCGTTGATG PTO0377 412938 - 413621 + | putative peroxiredoxin TERM 275 413873 - 413907 + G 76 -5.1 -5.13521 | gap 1, opp_overlap 413880 413883 TAAAGGAGATACTTT TTAG-CAACAAGCCCT TAAA AGAGCTTGGTGACTAA TTTTTTAAATAATTT TERM 276 413899 - 413880 - g 70 -8.6 -3.15249 | opp_overlap 413873, overlap 413883 GATACTTTTTAGCAA CAAGCCCT TAAA AGAGCTTG GTGACTAATTTTTTA PTO0378 413623 - 413907 + | hypothetical protein PTO0379 413983 - 414591 + | phosphoribosylglycinamide formyltransferase PTO0380 415140 - 414577 - | hypothetical protein PTO0381 416059 - 415184 - | ornithine cyclodeaminase PTO0382 416517 - 416119 - | hypothetical protein PTO0383 417727 - 416519 - | acetyl-CoA acetyltransferase TERM 277 417018 - 417003 - GR 72 -5.4 -4.63218 | TTTCTCTTAACAAAA TCCTCG GATG CAAGGA CAATGGCAGCAGCAC TERM 278 417128 - 417149 + gr 77 -7.3 -4.33105 | overlap 417129 417144 417147 TTTATTTCTGTACTG TGCATCAGG ATTC CTTGATGCG TTTTCGTGGTCGTTA TERM 279 417129 - 417148 + gr 73 -8.6 -3.1914 | overlap 417128 417144 417147 TTATTTCTGTACTGT GCATCAGG ATTC CTTGATGC GTTTTCGTGGTCGTT TERM 280 417406 - 417420 + gr 73 -8.5 -3.21354 | opp_overlap 417400 CCTCATGAACAGCTG CGGCG CCAGA CGCCG TTGATGCCTCTATCC PTO0384 418727 - 417672 - | hypothetical protein TERM 281 417764 - 417774 + gH 74 -8.2 -3.65656 | CCATCATCTTTCTTA CGCC CGG GGCG TTCTCTCTATGATAA TERM 282 418184 - 418201 + gH 72 -7.1 -3.94648 | GCCAGAAATCCGGGG TATCTGT TGCA ACAGATA TTGTCTTGTTTATCT PTO0385 418854 - 419675 + | band 7 integral membrane protein-like protein PTO0386 420345 - 419626 - | dimethyladenosine transferase PTO0387 420893 - 420342 - | hypothetical protein PTO0388 421204 - 420896 - | DNA-directed RNA-polymerase subunit F PTO0389 421498 - 421205 - | 50S ribosomal protein L21e PTO0390 422633 - 421500 - | hypothetical protein PTO0391 422766 - 422635 - | DNA-directed RNA polymerase subunit P rpl37ae 423016 - 422759 - | 50S ribosomal protein L37Ae TERM 283 422899 - 422915 + g 84 -10.9 -3.79906 | TCTGCTTGCACTTTG GGCATAC ATA GTATGCC TTCTTCTGCACATAA PTO0393 423804 - 423022 - | exosome complex RNA-binding protein Rrp42 TERM 284 423320 - 423333 + g 70 -8.1 -3.254 | overlap 423319 423322 ATGGCATTTCTCAAT GCTGC AACG GCAGC TATTGTCGATGCATC PTO0394 424526 - 423807 - | exosome complex exonuclease Rrp41 PTO0395 425193 - 424501 - | exosome complex RNA-binding protein Rrp4 TERM 285 424745 - 424759 + gH 76 -7 -4.22949 | TTGCCTATGACCCTT GGCACC TTT GGGGCC TTTATGTATATTATA TERM 286 425259 - 425269 + H 70 -4 -5.24003 | overlap 425263 TATTAAAATATAATT GTTT GAA AAAC TTTTTAGTTTTTATT TERM 287 426097 - 426080 - g 100 -8.4 -5.21709 | CGGTATAGTAAAAAA GAGGGC AATTGG GCCCTC AAAATATGAAAACAA PTO0396 425298 - 426596 + | hypothetical protein PTO0397 426853 - 426587 - | ferredoxin like protein PTO0398 428062 - 426854 - | electron transfer flavoprotein-quinone oxidoreductase YdiS PTO0399 428921 - 428109 - | hypothetical protein TERM 288 428755 - 428741 - GH 74 -5.8 -4.6526 | ATAAATTGGCAAAAA TGTTAA TAT TTAACA TAGATAAACCATTAT TERM 289 429342 - 429328 - gH 72 -7.2 -3.81279 | overlap 429326 AGATCGCAGAAAACA TTGATG TGT CATCAA TTGCAGTATCAGAAA PTO0400 428769 - 430487 + | peptidase PTO0401 430519 - 431388 + | oxidoreductase PTO0402 431385 - 432509 + | iron-sulfur cluster-binding protein PTO0403 432952 - 432506 - | alkyl hydroperoxide reductase PTO0404 433772 - 433020 - | hypothetical protein TERM 290 433728 - 433740 + g 71 -4.1 -5.00846 | AATTAATACGGGATT GCTAA GTC TTGGC TTTTTATAATATTTA PTO0405 434684 - 433929 - | translation initiation factor IF-2 subunit alpha rps27e 434877 - 434668 - | 30S ribosomal protein S27e rpl44e 435161 - 434880 - | 50S ribosomal protein L44e TERM 291 435091 - 435113 + g 76 -4.8 -5.0538 | overlap 435095 TTTCTCTTACGAACG CGCTCAACAT CAT GTGTTGTGTG TTTTTTGCAGTACGG PTO0408 435521 - 435237 - | hypothetical protein TERM 292 435509 - 435532 + g 75 -3.3 -5.20216 | overlap 435511 GGTTATTATGCCTGT TTTTTGTAT TCATTT ATACAAAGA TTTTTTAATAATATA PTO0409 435625 - 435948 + | protein secretion chaperonin CsaA PTO0410 435982 - 436842 + | hypothetical protein TERM 293 437801 - 437784 - g 86 -8.5 -4.56597 | opp_overlap 437783 437784 CCGTTTCTGGAAAAA CCTGAAA ATGC TTTCAGG GTTGTTGCGGCATCA ileS 436890 - 439964 + | isoleucyl-tRNA synthetase PTO0412 440927 - 439965 - | methyltransferase TERM 294 440225 - 440241 + g 76 -3.7 -5.27206 | opp_overlap 440225 440227, overlap 440227 TTATTTTATCATCAA GATAGAG ATC CTCTATG TTTTTATTATATATC TERM 295 440227 - 440239 + g 70 -6.3 -4.24787 | opp_overlap 440225 440227, overlap 440225 ATTTTATCATCAAGA TAGAG ATC CTCTA TGTTTTTATTATATA TERM 296 440819 - 440809 - G 88 -3.2 -5.69473 | GAGATTATAAAAAAA CCGT TTG ACGA AAAATTTATATTAAA PTO0413 441216 - 440914 - | DNA-directed RNA polymerase subunit L PTO0414 442007 - 441228 - | hypothetical protein PTO0415 442145 - 443419 + | elongation factor 1-alpha TERM 297 443619 - 443585 - g 77 -9.3 -3.41693 | gap 1, overlap 443563 443582 443588 CGTACCAGTAAGGAA GAGCCC-TGATGGGGA GGGT TCCCCAACATGGGATC GCTGGGAGATGAGGG TERM 298 443615 - 443588 - g 73 -9.8 -2.56164 | overlap 443563 443582 443585 ACCAGTAAGGAAGAG CCCTGATGGGGA GGGT TCCCCAACATGG GATCGCTGGGAGATG rps10p 443430 - 443741 + | 30S ribosomal protein S10P TERM 299 444100 - 444071 - g 73 -8.1 -3.65351 | gap 1 CGAGGTTGATGGAAA GGAGTACCTGATAA ATC TTAT-AGATACTCC AGGCCACGTTGATTT PTO0417 443814 - 446012 + | elongation factor EF-2 PTO0418 446046 - 447032 + | threonine synthase PTO0419 447442 - 447026 - | OsmC-like protein TERM 300 447418 - 447408 - G 83 -8.2 -4.43844 | TCATCACTGATAAAA CCGG TAT CCGG ATCAAATTTAAATGA PTO0420 448047 - 447472 - | hypothetical protein PTO0421 448599 - 448063 - | heat shock protein TERM 301 448614 - 448636 + r 73 -9.2 -2.8076 | overlap 448611 TACATCTCACCTCCA GTTATCAACC ATT GGTTGACAAC TACTTAATCATAATT PTO0422 449273 - 448755 - | deaminase TERM 302 450743 - 450728 - g 75 -7.6 -4.15932 | ATAAAAACACAATAA GCAATG AAAA CATTGC AAAAATATACGATAC TERM 303 450829 - 450817 - g 80 -7.7 -4.43668 | opp_overlap 450820 TTAACAAACAAAGAA CTGGA TAT TCCAG AAAACTTCCAGGAGT TERM 304 450904 - 450877 - g 80 -2.6 -5.61824 | GAAAATGTAAAAAAA CCGGAGAAAACT GTTA AGGATTATCCGG ATATAAACACAAGAC alaS 449446 - 452058 + | alanyl-tRNA synthetase TERM 305 452640 - 452630 - g 70 -8.2 -3.2244 | TATTATAATAGGTAA CGCC ATT GGCG GATCACAGATGGCCG PTO0424 452055 - 453695 + | zinc metalloprotease PTO0425 454585 - 453692 - | asparaginase PTO0426 455607 - 454540 - | isocitrate dehydrogenase [NADP] aspA 455695 - 457062 + | aspartate ammonia-lyase TERM 306 457045 - 457062 + T 74 -4.9 -4.96848 | TACGATAAAATATTC TCGTTCA TGAA TGAATGA TTTTTATATACCGAC PTO0428 457596 - 457066 - | AsnC family transcriptional regulator TERM 307 457100 - 457122 + g 100 -12.2 -4.78237 | opp_overlap 457098 TCCTTTTTATATACC TTTGAAACCA CCA TGGTTTCAAA TTTTATTATACCCTG TERM 308 457207 - 457191 - G 78 -10.1 -3.28487 | opp_overlap 457191 457197 457198, overlap 457189 CGAGATTAAGGAAGA GCCCCTG CAG CAGGAGC TGGTTCTGGCCACGT PTO0429 457720 - 459000 + | oxidoreductase PTO0430 459965 - 458997 - | diphthamide synthase subunit DPH2 PTO0431 461012 - 460017 - | thioredoxin reductase TERM 309 460978 - 460967 - G 79 -7.2 -4.60924 | opp_overlap 460971, overlap 460968 GAAACGTCGCAAAAA GGCC GGTG GGCC CGGCACCTATAATGA TERM 310 460982 - 460968 - G 70 -8.5 -3.35832 | opp_overlap 460971, overlap 460967 AAACGTCGCAAAAAG GCCGG TGGGC CCGGC ACCTATAATGACAAG PTO0432 461805 - 461071 - | metallo-beta-lactamase superfamily hydrolase TERM 311 461523 - 461533 + g 79 -6.8 -4.83243 | AAAAGTTCCCTATTG CGAC CTC GTCG TTTATTTTATATCCA PTO0433 461926 - 462144 + | hypothetical protein TERM 312 463045 - 463057 + G 72 -4.8 -4.7497 | ATACTTTGTATGGTG GGCT TTTGC AGCC TTTTTAATACGTGAG PTO0434 462215 - 463318 + | hypothetical protein TERM 313 463468 - 463444 - g 83 -10.1 -3.99779 | overlap 463447 TAAAATTCAATGAAA GAACTGCCTAT ATA ATAGGCAACTC CCCGGATATGGAAGA TERM 314 463465 - 463447 - g 79 -8.2 -4.09923 | overlap 463444 AATTCAATGAAAGAA CTGCCTAT ATA ATAGGCAA CTCCCCGGATATGGA TERM 315 463903 - 463892 - g 79 -2.2 -5.50925 | gap 1 AATGAAGAGAAAAAA GCTCC AGT GG-GC GTTAAAATTAATTAA PTO0435 463302 - 463976 + | hypothetical protein PTO0436 464610 - 463963 - | 2-phosphosulfolactate phosphatase rpl11p 464705 - 465172 + | 50S ribosomal protein L11P rpl1P 465183 - 465824 + | 50S ribosomal protein L1P TERM 316 466241 - 466228 - g 71 -9.5 -2.58663 | overlap 466227 AGCGAGTTCCAGAAG GCCGG CCTG CCGGC AGCAATTGAAAAGGG rplP0 465817 - 466764 + | acidic ribosomal protein P0 TERM 317 466965 - 466941 - g 83 -7.7 -4.57569 | overlap 466942 GGATGTTCTTAAAAA CGCGGCTGCCG CAC CGGTAGCAGCA CCGGCACCTGCAAAG TERM 318 466964 - 466942 - g 72 -9 -3.3422 | overlap 466941 GATGTTCTTAAAAAC GCGGCTGCCG CAC CGGTAGCAGC ACCGGCACCTGCAAA rpl12p 466774 - 467079 + | 50S ribosomal protein L12P PTO0441 467096 - 467269 + | hypothetical protein PTO0442 467728 - 467276 - | bacterioferritin comigratory protein PTO0443 468207 - 467752 - | PUA domain-containing protein PTO0444 469528 - 468212 - | hypothetical protein nusG 470382 - 469525 - | transcription antitermination protein NusG PTO0446 470640 - 470392 - | protein translocase subunit Sss1 TERM 319 470876 - 470896 + r 75 -8.9 -3.14931 | GCAGGGGCATATTCA CCGCGGGTT GTT GACCCGCGA TTACTACGGAATCCA TERM 320 471712 - 471739 + r 83 -10.6 -3.02043 | gap 1, overlap 471728 CCACCACTTGAGCTG CGGGTGTTA-CCG CGG CGGCTGGCACCCG TCTTACCCAGCCCTT TERM 321 471803 - 471784 - R 100 -12.2 -4.79352 | TTAGGCATAAGAAAA GTCTTGGC TTTT GCCAAGAC ACTCAAGCTCCCCGT TERM 322 472195 - 472209 + r 90 -10 -4.08064 | opp_overlap 472194, overlap 472166 CCGGAGTTAATCCAT GTCGAC TTG GTCGAC TTTTAAAGAAGAATT TERM 323 472225 - 472237 + r 75 -9.1 -3.12351 | opp_overlap 472224 472223 TTTTAAAGAAGAATT GGCAG GCT CTGCC TTACCTATCAGAACC PTO0447 473200 - 472460 - | transporter PTO0448 474076 - 473234 - | dehydrogenase PTO0449 475538 - 474120 - | permease, multidrug resistance protein PTO0450 475617 - 475901 + | hypothetical protein PTO0451 476969 - 475902 - | hypothetical protein TERM 324 476170 - 476184 + g 79 -8.6 -4.13343 | opp_overlap 476168 476170 GTTGAAACAATAACA TGCCTT GAA AAGGCA TTTTCCACCGTTTCT TERM 325 476184 - 476170 - G 74 -8.6 -3.63464 | opp_overlap 476170, overlap 476168 GTTGAAACAATAACA TGCCTT GAA AAGGCA TTTTCCACCGTTTCT TERM 326 476564 - 476577 + g 72 -2.3 -5.19261 | TCTCCCCCCACTTGC CACGT ATTG ACGGG TTTTTTAATGCGTTT PTO0452 477240 - 476998 - | hypothetical protein PTO0453 477818 - 477258 - | hypothetical protein PTO0454 479725 - 477848 - | 7-cyano-7-deazaguanine tRNA-ribosyltransferase TERM 327 477886 - 477896 + g 70 -8.2 -3.28864 | overlap 477885 CCTCATGAACCTTTA CGGC CAC GCCG CTTTTATAATAATAC PTO0455 479970 - 479755 - | hypothetical protein PTO0456 482259 - 480025 - | cell division cycle protein 48 PTO0457 482658 - 482353 - | ArsR family transcriptional regulator PTO0458 482943 - 482707 - | hypothetical protein TERM 328 483599 - 483579 - g 77 -6.2 -4.83677 | overlap 483580 AAAATAAAATGAAAA CTGTAAGG AAAGG CCTTACAA GGGATATGGTTCCAA PTO0459 483029 - 484156 + | sugar transporter TERM 329 484454 - 484439 - g 72 -4.8 -4.75289 | opp_overlap 484439 TATTATAATATAAAA TGAAAT CTAT ATTTCA TACTTTAAAAGAAAT PTO0460 484438 - 484785 + | hypothetical protein TERM 330 485127 - 485138 + T 90 -7.2 -4.91511 | TATTACCATAGCCAC CGCC ACCT GGCG TTTTTATAATAACCT PTO0461 486633 - 485107 - | hydantoinase_b/oxoprolinase TERM 331 485643 - 485657 + g 74 -8.6 -3.60792 | overlap 485640 GCAAAACTGTATCGG CAACAC GCT GTGTTG TTTCCACATTGCCGC TERM 332 486016 - 486028 + g 76 -2.7 -5.42131 | opp_overlap 486017, overlap 486017 TGAGTGATATATTAA TTCAT CCC ATGAG TTTTTTATATCGTTC PTO0462 488588 - 486630 - | N-methylhydantoinase TERM 333 488722 - 488734 + H 77 -4.8 -5.1356 | opp_overlap 488722 GTAAAATAATAGAAT GGCA ATTAA TGCC TTTTTATTCATGCCA TERM 334 490022 - 490008 - g 79 -7.2 -4.57882 | opp_overlap 490008 490007 490018 TTCAATAACAAGAAA TATGCT CGC AGCATA CTTTGTATTCTTATT PTO0463 489340 - 490473 + | transporter PTO0464 490650 - 491075 + | asymmetrical bis(5'-nucleosyl)-tetraphosphatase TERM 335 491173 - 491187 + G 79 -8.6 -3.91897 | AATACTGTTACATGG CTCCTT AGC AAGGAG TTTGTAAATGAGAGA PTO0465 491062 - 491649 + | orotate phosphoribosyltransferase TERM 336 493008 - 492992 - g 73 -8.1 -3.69482 | GGATTCAATACACAA TTATGTC TAT GACATAA TAGGAAGATCAAAAA lysK 491652 - 493166 + | lysyl-tRNA synthetase TERM 337 493530 - 493516 - g 70 -2.8 -5.07652 | opp_overlap 493516 CCTGCTAAAACAAAA TACAAC GTT GATGTA ATTTCCATGGGGTTA PTO0467 493231 - 494055 + | ATPase TERM 338 494543 - 494559 + F 72 -7.3 -3.72788 | opp_overlap 494543 GCCGAGGACAACTCA GTTATCC CTG GGGTAAC TTCTCTCTTATCACC TERM 339 495418 - 495405 - f 80 -8.1 -4.14541 | CAGGAATTAGAGAAA TCCCC ATAA GGGGA CAGATACATCTTCGC TERM 340 497058 - 497083 + F 76 -7.8 -3.68084 | AAGACCTTCACCTCC CCTATTAATA ATCATG TATTAATAGG TTCATTTGTGTGTAT TERM 341 497184 - 497157 - f 77 -5.2 -4.91511 | gap 1, opp_overlap 497149 497157 ATTTTATTATAAAAA TTAAAA-AAATAC ATT GTATTTATTTTAA TATTGATATTTTTAC PTO0468 497292 - 498299 + | phosphoribosylaminoimidazole synthetase PTO0469 499696 - 498296 - | DNA polymerase II small subunit TERM 342 498751 - 498735 - G 83 -3.7 -5.52384 | overlap 498742 TTTTTATTAAAAAAA TCAGAGA TCT TCTTTGA AAAAACAGGCTGCGG TERM 343 499336 - 499350 + g 73 -2.8 -5.31855 | TCTTTACCTTCCCCT GTGAAA CCT TTGCAC TTTTTATTGTTAATG TERM 344 499679 - 499700 + g 73 -8.1 -3.66378 | gap 1 TAGTATTGATTCCCT GTCC-TGGAA AAG TTCCATGGAC TTTCAGTGAGATATA TERM 345 500437 - 500425 - g 70 -4.8 -4.59846 | AGGACATAAAAACAA GGGA GAGGT TCCC GGATGCCTCCAGGGA PTO0470 499815 - 501266 + | inositol-5-monophosphate dehydrogenase PTO0471 501301 - 501555 + | hypothetical protein PTO0472 502463 - 501537 - | ABC-type multidrug transport system, ATPase component PTO0473 503266 - 502460 - | hypothetical protein PTO0474 503380 - 504189 + | hypothetical protein PTO0475 504244 - 505467 + | oxidoreductase PTO0476 505527 - 506429 + | homoserine kinase TERM 346 507112 - 507087 - g 90 -11.9 -3.68619 | opp_overlap 507089 GTCAATGGATCCAAA TACAGCGTTCC TTGT GGAACGCGGTA TTAAAACACTGGATT TERM 347 507089 - 507110 + G 75 -10.1 -3.02511 | opp_overlap 507087 CAATGGATCCAAATA CAGCGTTCC TTGT GGAACGCGG TATTAAAACACTGGA PTO0477 506422 - 507516 + | hypothetical protein PTO0478 508560 - 507511 - | diphosphomevalonate decarboxylase TERM 348 508472 - 508491 + g 76 -7.2 -4.33417 | opp_overlap 508472 TTATTGTATTTAATA TCAGGTGA ATAA TCATCTGA TTTATTATAAATGCC PTO0479 509131 - 508553 - | 2-phosphoglycerate kinase TERM 349 509105 - 509144 + g 75 -6.5 -4.39318 | GGTCTTGCCAACACC CGGTATGCCACCAATGA ATACTA TCATTGATTGCGTATCG TTTTAAATTTAATTA PTO0480 509230 - 509847 + | superoxide dismutase [Fe] PTO0481 509877 - 510506 + | N-glycosylase/DNA lyase TERM 350 510844 - 510834 - g 77 -8.2 -3.95073 | opp_overlap 510833 GCTTATAGTTATAAA CGGC GAT GCCG GTGTCTATGCACAGC PTO0482 510511 - 511170 + | hypothetical protein PTO0483 512560 - 511151 - | thiamine biosynthesis protein ThiI TERM 351 512943 - 512928 - g 71 -3.3 -5.1287 | overlap 512935 512938 TGGATATCTAAAAAA TGCAA TAGATC TTGCA TCAAGGCCATACGGT PTO0484 512668 - 513219 + | FMN-reductase PTO0485 514396 - 513221 - | gluconate/galactonate dehydratase TERM 352 513506 - 513491 - G 70 -7.6 -3.55622 | CTGAACCGGTCCAAA GGCATT ATGA AATGCC ATGAGGCCTCCAAAG PTO0486 516358 - 514436 - | V-type ATP synthase subunit I PTO0487 516683 - 516363 - | V-type ATP synthase subunit H PTO0488 517421 - 516774 - | V-type ATP synthase subunit D PTO0489 518778 - 517396 - | V-type ATP synthase subunit B TERM 353 518652 - 518625 - GR 81 -9.2 -3.71527 | gap 1 TCTGAACTATTGAAA GGCC-GTTTCTTG TCT CAAGAACCTGGCC ACGGCGCTTCTCACC PTO0490 521539 - 518771 - | V-type ATP synthase subunit A PTO0491 521841 - 521542 - | V-type ATP synthase subunit F PTO0492 522884 - 521838 - | V-type ATP synthase subunit C PTO0493 523435 - 522887 - | V-type ATP synthase subunit E PTO0494 523665 - 523435 - | A1AO H+ ATPase subunit K PTO0495 524220 - 523711 - | C4-type Zn-finger-containing protein PTO0496 525363 - 524314 - | isopentenyl pyrophosphate isomerase PTO0497 526088 - 525360 - | kinase PTO0498 526695 - 526135 - | hypothetical protein TERM 354 526615 - 526605 - G 71 -4.6 -4.84017 | overlap 526607 AACCGGCTATAAAAA GGGC TAT ACCC AGCATGAGAATTATT TERM 355 527177 - 527193 + G 75 -8.1 -3.78419 | opp_overlap 527177 527176 AGCTGGTACATCAAC GTTTGTT CTT AACAAAC TTGTATCTTTCCTAC PTO0499 527001 - 527573 + | terminal quinol oxidase, subunit I PTO0500 527579 - 528115 + | terminal quinol oxidase, subunit II PTO0501 528766 - 528122 - | acetyl-coenzyme A synthetase PTO0502 530053 - 528863 - | acetyl-coenzyme A synthetase TERM 356 528955 - 528992 + g 90 -8.5 -4.93812 | opp_overlap 528961 CATTACCATACCTTG CAAGCATTCTAAGGAAC GTTG GTGCCTTAAAAAGCTTG TTTATTTTATATTTT TERM 357 529498 - 529528 + g 89 -10.6 -4.63218 | opp_overlap 529513 529527 TTATAATGACCTTTG GCATTGTTTCATAG AGC CTATCAAGCAATGC TTTTGTTGAAAAACC TERM 358 529913 - 529930 + g 76 -4.1 -5.27923 | TCCAGCCCAGTAATC TCCAATG TTTT CAATGGA TTTTTTATAAAATTG TERM 359 531650 - 531673 + r 71 -2.6 -5.52986 | opp_overlap 531654, overlap 531654 TTTTATAATTAATGA TAAATAATAT TATT ATATTATATA TTTTTTTAGTAAAAT TERM 360 531759 - 531747 - R 93 -3.5 -6.23317 | overlap 531755 ATAAAAATAAAAAAA TAAAA ATT TTTTA TACATAAAATATAGA PTO0503 532901 - 531804 - | aminomethyltransferase PTO0504 533593 - 533024 - | glutamine amidotransferase subunit PdxT truD 533645 - 534889 + | tRNA pseudouridine synthase D PTO0506 535436 - 534882 - | transcription factor PTO0507 535829 - 535515 - | putative aromatic ring hydroxylating enzyme PTO0508 536808 - 535849 - | fused phosphopantetheine adenylyltransferase/unknown domain-containing protein PTO0509 538050 - 536866 - | GntR family transcriptional regulator PTO0510 539761 - 538094 - | electron transfer flavoprotein alpha and beta-subunit TERM 361 538643 - 538657 + g 85 -7.2 -5.09426 | GCCGCCGAAGGATGG CTTGTA CTG TACAAG TTTTTTACCATTGAA TERM 362 538852 - 538864 + g 80 -7.7 -4.39166 | AATAGATATACTCAT GGCAT GGA ATGCC TTTTAATCTCTCCGG PTO0511 540078 - 539758 - | Rieske iron-sulfur protein hisS 541393 - 540122 - | histidyl-tRNA synthetase TERM 363 540369 - 540392 + g 83 -6.9 -4.91778 | GCTTCTGGACTCGAT GAGATATTA ACAACG TAATATCTC TTTCTTTTATCTTTA TERM 364 540519 - 540499 - G 71 -3.9 -4.87665 | TCTCATTTATAAAAA GGTTCGATA AAT TGTCGTACC TGCCACCACCAAGTA TERM 365 541679 - 541659 - H 70 -6.3 -4.02653 | AATCAATTTAAACAA TACCTATTT ATA AAATAGATA AATAAGCAAATATTT TERM 366 541814 - 541832 + G 74 -6 -4.54449 | opp_overlap 541814 541817, overlap 541815 TTTCATAACCAGATA GCAGATGA ATA TCATCTGG TTTTCTATGGAATAT TERM 367 541815 - 541831 + G 75 -9.5 -3.31946 | opp_overlap 541814 541817, overlap 541814 TTCATAACCAGATAG CAGATGA ATA TCATCTG GTTTTCTATGGAATA PTO0513 541706 - 542605 + | mechanosensitive (MS) ion channel PTO0514 542652 - 542879 + | Lrp family transcriptional regulator PTO0515 542890 - 543189 + | hypothetical protein PTO0516 543220 - 544137 + | GMP synthase subunit B TERM 368 544705 - 544675 - g 72 -5.4 -4.67968 | opp_overlap 544675, overlap 544677 CCAACAAACAATAAA GGCAGGAGATCACT TGC AGTTATCTACTGGC TTCTTGCACGCGAGA rps2P 544195 - 544797 + | 30S ribosomal protein S2 PTO0518 545648 - 544794 - | tRNA splicing endonuclease TERM 369 545592 - 545604 + g 76 -2.6 -5.36441 | ATTTATTAAATACGA CGGG CTCTT TCCG TTTTTTATATCAAAA PTO0519 546149 - 545673 - | hypothetical protein PTO0520 546791 - 546333 - | hypothetical protein PTO0521 546868 - 547626 + | molybdopterin biosynthesis MoeB protein PTO0522 548381 - 547623 - | transporter TERM 370 547965 - 547980 + g 78 -5.4 -5.07011 | gap 1 AATGCTTAAAAGCAT GGCCACT GGC AG-GGCC TTTTTCCTTTCTATG TERM 371 548925 - 548911 - g 73 -4.2 -4.96848 | TTGGTGATATAAAAA CCGTGA TCG TCAGGG ATCAAAGGTTCTTTG PTO0523 548493 - 549449 + | oxidoreductase PTO0524 549632 - 550705 + | transporter PTO0525 550735 - 551073 + | putative nitrite reductase/sulfite reductase TERM 372 551470 - 551456 - g 74 -5.6 -4.80289 | ATAAAATAGAGAAAA GCGCTG TTT CAGAGC TTGAACCAATAATGT PTO0526 551146 - 551496 + | hypothetical protein PTO0527 551493 - 552236 + | translation initiation factor IF-2B subunit delta PTO0528 552304 - 552741 + | ferredoxin TERM 373 552773 - 552783 + T 78 -6.8 -4.69053 | TATTTTCCGGCAAGG GCCT CAT AGGC TTTTATTGCATCATC PTO0529 553341 - 552757 - | hypothetical protein PTO0530 553462 - 554649 + | argininosuccinate synthase TERM 374 555306 - 555296 - g 76 -2.6 -5.38951 | opp_overlap 555296 555289 AAGGTACATAAAAAA TATT GAA AATA TTGTTTATTTAATCT TERM 375 555456 - 555434 - g 70 -7.8 -3.67976 | opp_overlap 555450, overlap 555437 TTCACTAATGCCAAA CAAGATAAAC CCG GATTATCTTG AGCTGTTTCAGGGTA PTO0531 554646 - 555908 + | argininosuccinate lyase TERM 376 557556 - 557513 - g 81 -7.4 -4.76193 | gap 1, overlap 557516 557517 AACGATAATAGAAAA GTACGGT-GCGGATGCCCTGA GGT TCTGGGCATCAACAACCATGC CAGGAGAGAACATAA TERM 377 557551 - 557517 - g 71 -9.2 -2.55564 | overlap 557516 557513 ATAATAGAAAAGTAC GGTGCGGATGCCCTGA GGT TCTGGGCATCAACAAC CATGCCAGGAGAGAA valS 555933 - 558239 + | valyl-tRNA synthetase TERM 378 558246 - 558226 - T 86 -9.1 -4.24786 | opp_overlap 558225 GTGATAATATAGAAA TTGAGGTTC AGT AAACCTCAA GATATCTATTTATCT PTO0533 559555 - 558233 - | glutamine synthetase TERM 379 559636 - 559652 + H 73 -3.8 -5.31456 | TAAATATATTCATAT CATAAT GAAGA ATTATG TTTTTTATAAATTAG TERM 380 559788 - 559765 - H 77 -7.6 -4.31859 | TTAATAAAATAATAA TGAATTCATA TTGG TATGAATCCA AGAGAGATAAGGCGC nac 559780 - 560106 + | nascent polypeptide-associated complex protein PTO0535 560103 - 561386 + | tRNA CCA-pyrophosphorylase PTO0536 563356 - 561383 - | acyl-CoA synthetase PTO0537 563579 - 563773 + | hypothetical protein TERM 381 563771 - 563786 + T 78 -3.4 -5.68438 | GTATTTTCAGGTGGA TAAAAA AATA TTTTTA TTTTTTATTTCCTGC PTO0538 564437 - 563784 - | hypothetical protein PTO0539 565679 - 564444 - | sulfide-quinone oxidoreductase TERM 382 565540 - 565566 + g 82 -11.6 -2.95306 | overlap 565535 ACTCCTATTGATACG TGTGGCATTCCG GGT CTGAATGCCGCA TATGGTGTATTGTTT TERM 383 565968 - 565983 + H 75 -3.4 -5.56568 | opp_overlap 565968 GTATTTATTTCAAAG TTTTAA ATAA TTAAAA TTTTTTTCATAATAT PTO0540 566155 - 566577 + | inosine-5'-monophosphate dehydrogenase PTO0541 566612 - 567541 + | UDP-glucose 4-epimerase TERM 384 567949 - 567933 - g 82 -9.5 -4.13304 | overlap 567924 567939 AAATTATCTTGAAAA GAGATAC ATG GTATCTC CATACTGCAAATCAA PTO0542 567574 - 569646 + | methionyl-tRNA synthetase rpoK 569694 - 569876 + | DNA-directed RNA polymerase subunit K PTO0544 569940 - 570473 + | hypothetical protein PTO0545 571115 - 570468 - | lipoate-protein ligase B TERM 385 570873 - 570913 + g 76 -8.9 -3.83262 | opp_overlap 570869 570872 570870, overlap 570875 AAAGTAAGAAACCAG CTGGCCGGGGCCGTGATAT GTT ATATCACCACCGCGGTCTG TTCTTATAACATTTA TERM 386 570875 - 570911 + g 79 -10.1 -3.49226 | opp_overlap 570869 570872 570870, overlap 570873 AGTAAGAAACCAGCT GGCCGGGGCCGTGATAT GTT ATATCACCACCGCGGTC TGTTCTTATAACATT PTO0546 572376 - 571096 - | dihydrolipoamide dehydrogenase TERM 387 571226 - 571245 + g 79 -10.6 -3.25787 | overlap 571224 ATCTCTGATGATCTT GGCGCGGC GATG GCCGCTCC TGTTACTGTTCCATC PTO0547 573538 - 572378 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 388 572989 - 573006 + g 70 -7.1 -3.76888 | overlap 572988 TCTGCTTTGATTTCG TCATCTT GTCG AAGATGA TCTTTCTTATGCCTG TERM 389 573333 - 573345 + g 70 -4.7 -4.66163 | GTTGCTATGCTGTCA CCGAC CTT GACGG TTTTTCCCTCCGGCT PTO0548 574513 - 573548 - | pyruvate dehydrogenase E1 component beta subunit TERM 390 574272 - 574260 - G 83 -7.7 -4.54047 | GCAGTGTATATAAAA TCCAG AAA CTGGA TCTCAGGCACGGGCC PTO0549 575511 - 574510 - | pyruvate dehydrogenase E1 component alpha subunit TERM 391 575178 - 575194 + g 75 -8 -4.06993 | CGGTGGTTATAACCG GGCCAA CCCTT TTGGCC TTATTTGATATATGC TERM 392 575414 - 575430 + g 73 -3 -5.24129 | GGCAAAAATCCCTGT CTGTTT ATTCC AAGCAG TTTTTTATCAAGAAA PTO0550 576364 - 575504 - | lipoyl synthase TERM 393 575578 - 575535 - G 78 -6.9 -4.36914 | gap 3, overlap 575566 CCCCCCTTGACAAAA GCCTC-AG-CCGCCCTGTAAGA TGT CCTTACA-AGCGGACCCGAGGC CACAAAGGAAAAACC TERM 394 575604 - 575592 - G 80 -6.3 -5.04601 | GCCACAAAGGAAAAA CCTAT GCT ATAGG CGGACTCCTCAAGAT PTO0551 577398 - 576430 - | dihydropteroate synthase TERM 395 576832 - 576847 + g 100 -7.6 -5.9873 | TGGCTCACCACGCAT GTGCAT AACT ATGCAC TTTTTTTTATACTCA PTO0552 577477 - 578655 + | transporter PTO0553 580049 - 578658 - | phosphate transporter TERM 396 578695 - 578705 + g 73 -4.6 -4.93454 | CTCTCACCAGATGTC TCGC TAA GCGG TTTTCTCTTTGTTTC TERM 397 579281 - 579260 - G 70 -8.1 -3.32963 | gap 1 AGGCCCAGTCCATAA GGAACCA-TG TAA CACTGGTTCC AATCAACGTTATAAA TERM 398 580097 - 580111 + H 78 -4.4 -5.37345 | opp_overlap 580099 580101, overlap 580090 580090 580090 ATTATCCATATATAC TATATA TAA TATATA TTTTTTATAATTAAG PTO0554 580225 - 580656 + | hypothetical protein TERM 399 581256 - 581243 - g 77 -6.7 -4.57304 | ACTCAATGAAACAAA CCATG GAAA CATGG ACGAAATCGTTTCAG PTO0555 580683 - 582449 + | putative ATPase RIL PTO0556 582871 - 582440 - | hypothetical protein PTO0557 583986 - 583051 - | hypothetical protein PTO0558 587263 - 584021 - | DNA polymerase II large subunit TERM 400 586824 - 586836 + g 76 -9.1 -3.78934 | overlap 586814 CTTAATGCCTGCGCC GTGCC GCC GGCAC TTCTTATCGGGCCAG TERM 401 587180 - 587170 - G 70 -8.2 -3.32498 | opp_overlap 587169 587167 587166 CATCTGAGACATCAA GGCC CAT GGCC CTTGCCTTTTTTGCT PTO0559 587595 - 587266 - | sterol binding protein PTO0560 589168 - 587564 - | CTP synthetase PTO0561 589263 - 589769 + | hypothetical protein PTO0562 591178 - 589766 - | hypothetical protein PTO0563 592215 - 591187 - | hypothetical protein TERM 402 591245 - 591257 + g 80 -6.3 -5.03747 | opp_overlap 591244 AGTGGATCAAAGACC GGTAT ATT ATACC TTTTTTCCAGGCTTT TERM 403 591736 - 591760 + g 76 -2.7 -5.46698 | overlap 591738 591741 TCTTTTTCCTATTGC GCTATCGGTAC CAA GAACCGCTATC TTTTTTGATTTTACA PTO0564 593162 - 592215 - | threonine synthase TERM 404 592482 - 592492 + g 76 -2.6 -5.40474 | TATTTTTTCCTCGCT TAAT TCC ATTA TTTTTTTGGAACCAT PTO0565 593268 - 593924 + | ribose-5-phosphate isomerase A PTO0566 594890 - 593928 - | phosphate uptake regulator PTO0567 595662 - 594946 - | hypothetical protein TERM 405 595625 - 595642 + g 76 -2.7 -5.39721 | ACTGAGAATATTATT GAAAAGA GGCC TCTATTC TTTTTTATATACTGG PTO0568 596828 - 595689 - | geranylgeranyl hydrogenase TERM 406 595908 - 595922 + g 74 -5.7 -4.7254 | overlap 595916 AAGCTCACGGCCTAT CTCTG ATCTC CAGAG TTTTTGATAAAGGCT TERM 407 595916 - 595943 + g 72 -5 -4.83615 | gap 1, overlap 595908 595941 GGCCTATCTCTGATC TCCA-GAGTTTTT GAT AAAGGCTCATGGA TTTTTCTGAGAAGTC PTO0569 596892 - 597935 + | hypothetical protein ribA 598505 - 597927 - | GTP cyclohydrolase II PTO0571 598695 - 599240 + | hypothetical protein TERM 408 599238 - 599253 + F 78 -3.4 -5.73563 | CTGAACTATTACAGC TAAATT TTTT AATTTA TTTTTTTAATTTAAT ubiA 599382 - 600281 + | prenyltransferase PTO0573 601141 - 600278 - | NAD(FAD)-dependent dehydrogenase TERM 409 600721 - 600751 + g 80 -7.7 -4.4874 | overlap 600723 CAGAGCTTATCCTGT TGCCAAGGAAATT CATGT AATTTCCATGGTA TTTTACATTTTTACC TERM 410 600723 - 600749 + g 75 -8.1 -3.83717 | overlap 600721 GAGCTTATCCTGTTG CCAAGGAAATT CATGT AATTTCCATGG TATTTTACATTTTTA TERM 411 600884 - 600911 + g 75 -4.2 -5.02439 | gap 1, overlap 600882 CCTTATCTGGTCTGT TCTTG-AGCAGCC AAG GGCTATTACAAGA TTTTTATAATTGTAT PTO0574 601968 - 601177 - | transcriptional regulator PTO0575 602047 - 603132 + | carboxypeptidase G2 precursor PTO0576 603208 - 604299 + | transcriptional regulator PTO0577 606004 - 604286 - | hypothetical protein PTO0578 607916 - 605982 - | putative maltose phosphorylase TERM 412 607468 - 607457 - GR 71 -4.4 -4.74801 | opp_overlap 607467, overlap 607462 607467 CAATTTTATTAAAAA CATC ACAT GATG GCCATGCCCTTGTAT PTO0579 608985 - 607885 - | maltose ABC transporter ATP-binding protein PTO0580 609856 - 608990 - | maltose ABC transporter permease protein PTO0581 610782 - 609862 - | maltose ABC transporter permease protein PTO0582 611957 - 610797 - | maltose ABC transporter solute binding protein TERM 413 612511 - 612492 - R 70 -2.2 -5.5112 | overlap 612493 TCCATGAATAAAAAA GCTAATAT TCTG ATATTAGG ACAGCTAAGGACAAT TERM 414 612648 - 612630 - R 100 -8.8 -5.36441 | CGGTTATACAAAAAA TAGACGCC AAG GGCGGCTA ATAAAAACGAAGTGA TERM 415 613802 - 613788 - R 93 -7.2 -5.093 | CTGAAAAGAATAAAA TTACTG ATA CAGTAA GAGGTGCATATGGTG PTO0583 614702 - 613884 - | hypothetical protein PTO0584 615569 - 615030 - | hypothetical protein PTO0585 617257 - 616313 - | type II restriction modification system, methylation subunit PTO0586 617874 - 617257 - | type II restriction modification system, restriction subunit TERM 416 617837 - 617819 - G 72 -6.1 -4.50159 | opp_overlap 617819 617819 617822 GCTAATTGAAATAAA TAAGGAA GCTTA TTCCTTA TCTTAGCAATTATAG rfc 619340 - 618384 - | replication factor C small subunit PTO0588 619423 - 619959 + | nucleoside-triphosphatase PTO0589 619991 - 620635 + | xanthine-guanine phosphoribosyltransferase PTO0590 621477 - 620626 - | carbamate kinase TERM 417 621383 - 621405 + g 75 -9.9 -2.99874 | opp_overlap 621388, overlap 621388 ATGTCAGCAAGCTCT GAGAAGGCC TTTAC GGCCTTTTC TATCTGCTCGTTTAT TERM 418 621388 - 621400 + g 74 -6.2 -4.62984 | opp_overlap 621388, overlap 621383 AGCAAGCTCTGAGAA GGCC TTTAC GGCC TTTTCTATCTGCTCG PTO0591 621688 - 622071 + | 30S ribosomal protein S6e TERM 419 622427 - 622410 - g 71 -4.1 -4.98531 | GCCGCAAATGAAAAA TGTCCGC AACC ACAGACA AGGGAGCATCTAACA TERM 420 622925 - 622909 - g 85 -9.4 -4.35042 | opp_overlap 622907 CTTACGATAAAATAA GGCCAG GAGGT CTGGCC GCTGTTGGTACAAAG PTO0592 622071 - 623288 + | translation initiation factor IF-2 subunit gamma PTO0593 623903 - 623256 - | endonuclease III thrS 626036 - 623904 - | threonyl-tRNA synthetase TERM 421 624480 - 624498 + g 73 -6.6 -4.28069 | opp_overlap 624479, overlap 624466 CTCCTTGTAATTCAG GTTCCTGG ATT CCAGGGCC TTTCTTAAATTCTCT PTO0595 626684 - 626259 - | hypothetical protein TERM 422 626364 - 626381 + g 73 -2.7 -5.28176 | overlap 626366 TGCGCTTTCTATGTT TCCAGAT CTTA ATCTGTA TTTTTTCTCCCTGCC aroD 626741 - 627352 + | 3-dehydroquinate dehydratase PTO0597 627962 - 627333 - | multiple antibiotic resistance protein marC TERM 423 627608 - 627631 + g 85 -11.7 -3.55801 | opp_overlap 627597 GCAATGGCGTTCCAA GGGGGGCCA CACCAA TGGCCTCCC TTTCAACGGATTCCT PTO0598 629839 - 627998 - | glucoamylase TERM 424 628433 - 628457 + g 80 -3 -5.60689 | opp_overlap 628433, overlap 628407 628434 GTAGTACTGAACAAA TGAATTTAAT TCCTT ATTAAATCCA TTTTTTATTATATCA aroB 629932 - 630948 + | 3-dehydroquinate synthase aroE 630945 - 631745 + | shikimate 5-dehydrogenase TERM 425 632337 - 632314 - g 83 -8.2 -4.46581 | GAAAATTTGATAAAA CATGGCATGA TATT TGATGCCATG GAGATGAATGGAAAC PTO0601 631738 - 632577 + | shikimate kinase PTO0602 632555 - 633790 + | 3-phosphoshikimate 1-carboxyvinyltransferase argS 633825 - 635453 + | arginyl-tRNA synthetase PTO0604 636985 - 635465 - | hypothetical protein TERM 426 635619 - 635605 - G 79 -8.6 -3.99091 | opp_overlap 635604 CAAACAAAGCAAGAA CAACAG CGC CTGTTG CTATGTATATATAAT PTO0605 638436 - 637024 - | RtcB protein TERM 427 638226 - 638212 - G 100 -12.8 -3.91911 | opp_overlap 638212 CTCATCGTAATCAAA GGCGGC AAC GCCGCC TATTGGAAAACCATA TERM 428 638212 - 638226 + g 91 -12.8 -3.01924 | opp_overlap 638212 CTCATCGTAATCAAA GGCGGC AAC GCCGCC TATTGGAAAACCATA PTO0606 639600 - 638455 - | AMP-binding enzyme TERM 429 638584 - 638596 + g 75 -3.3 -5.21709 | CTCCGGTTTTATATT GCATG GCT CAAGC TTTTTTAATATAAAA TERM 430 639586 - 639599 + g 78 -3.1 -5.4492 | GTAAGGACCGATCTC TGGTA TTCT TGCCA TTTTTTATGTATATA PTO0607 640987 - 639635 - | putative sugar kinase TERM 431 641452 - 641464 + r 70 -3.5 -5.1287 | opp_overlap 641452, overlap 641443 TCACTCTTTTAAAAA TTAAA AAA TTTAA TTTTTTGCCTCTGCC PTO0608 642474 - 641461 - | hypothetical protein PTO0609 643929 - 642481 - | cytochrome d ubiquinol oxidase subunit I PTO0610 644233 - 645582 + | transporter glyA 646889 - 645588 - | serine hydroxymethyltransferase PTO0612 646942 - 647727 + | hypothetical protein PTO0613 647761 - 648588 + | spermidine synthase PTO0614 648958 - 648581 - | hypothetical protein TERM 432 648958 - 648980 + g 83 -7.9 -4.62475 | TTAATGGGCTTGGCA TGTAACATT ATATA AATGTTACA TTTTAATTTATCGCT PTO0615 649284 - 648994 - | hypothetical protein PTO0616 650299 - 649289 - | endonuclease IV PTO0617 650472 - 651761 + | DNA primase PTO0618 651746 - 653224 + | putative protease La homolog type 2 TERM 433 653574 - 653547 - g 82 -4.9 -5.36441 | GGCCGATATAAAAAA TATCTCACTGC TAATGG GCGATGAGATA CTAACAATACATATA PTO0619 653293 - 653889 + | hypothetical protein PTO0620 653909 - 654688 + | GTPase TERM 434 655244 - 655210 - g 72 -6 -4.4017 | opp_overlap 655213, overlap 655221 CCAATCTTGATAAAA TAATAAAAGAACAA AATAAAA TTGATCTTTTATTA TGCGGCTTTTTCACA PTO0621 654855 - 655430 + | isochorismatase TERM 435 655699 - 655677 - g 76 -2.9 -5.39721 | gap 1, overlap 655670 TCAGGAGATAAAAAA TTTATAAGGT TGAT ACCT-ATAAA CGCGATAAATTATAT PTO0622 655497 - 655787 + | hypothetical protein PTO0623 656272 - 655790 - | 2'-5' RNA ligase PTO0624 656347 - 656721 + | glycine cleavage system protein H PTO0625 656736 - 657320 + | FtsJ-like methyltransferase PTO0626 658013 - 657321 - | putative RNA-associated protein PTO0627 658101 - 658853 + | exodeoxyribonuclease III PTO0628 659356 - 658826 - | hypothetical protein PTO0629 660334 - 659387 - | hemin-binding periplasmic protein HmuT precursor TERM 436 660609 - 660597 - g 76 -2.7 -5.44119 | TTTACTTGAAAAAAA GCATT TAA AATAC GGTTTATCCGCTGGA PTO0630 660409 - 661284 + | transporter PTO0631 661318 - 662991 + | long chain fatty acid CoA ligase PTO0632 663009 - 663884 + | acyl-CoA transferase/carnitine dehydratase PTO0633 663916 - 664806 + | microsomal dipeptidase PTO0634 667767 - 665092 - | transporter involved in lipid transport TERM 437 667191 - 667201 + g 79 -4 -5.47159 | AATCTGTTATATTTT CATT TTT AATG TTTTTATTTGTTAAA PTO0635 667856 - 668230 + | hypothetical protein PTO0636 668926 - 668213 - | glycerophosphoryl diester phosphodiesterase PTO0637 669412 - 668957 - | peptidyl-prolyl cis-trans isomerase TERM 438 669727 - 669742 + G 74 -9 -3.4252 | opp_overlap 669722 TCAGATTACATGGGA TCAGCG CCGA CGCTGA TTCTAATAGCTGAGA TERM 439 670002 - 670014 + G 70 -7.7 -3.62597 | opp_overlap 669994, overlap 670000 TATCAATTCTGGTGA TGCAG CAT CTGCA TTATTAGAGGATACC PTO0638 669499 - 670065 + | hypothetical protein TERM 440 670300 - 670266 - f 75 -9.2 -3.18912 | CGACCGATGGATTAA GAGTCCATCGCTCTAC CTA GCTGAGCTACGGACCC ACAAGAAAGGTATGA TERM 441 671074 - 671062 - g 75 -3.5 -5.30339 | AGTAAAATACAAAAA TTTAT CAA ATAAA ATAGATGAAAGTTTT PTO0639 670388 - 671446 + | glucose-1-dehydrogenase rpl3p 671593 - 672582 + | 50S ribosomal protein L3P rpl4lp 672585 - 673349 + | 50S ribosomal protein L4P TERM 442 673549 - 673531 - g 71 -4.4 -4.7657 | CAAAAATGGTAAAAA GGCCATAG TAA CACTGGCC AAGGACTTCTCCGCC rplW 673349 - 673597 + | 50S ribosomal protein L23 TERM 443 673953 - 673973 + G 74 -8.9 -3.4072 | GTGGAAAGTTTTGCA GGGCTGCAG GAA CGGCAGCTC TTGTGATAAGCCATG rpl2p 673607 - 674308 + | 50S ribosomal protein L2P TERM 444 674354 - 674342 - g 85 -6.9 -5.06961 | overlap 674351 ATCAATAAAAAGAAA GGCCC GAA AGGCC CAGAAGGCCATAACG TERM 445 674436 - 674473 + G 91 -12.9 -3.14211 | gap 1, opp_overlap 674435 674438 AACATGGAATTGAAT GAGC-TTTTGCCTTTGCT TCC AGCAAGGGCAAGGCGCTC TTACTCAAGGCAGAT rps19p 674298 - 674753 + | 30S ribosomal protein S19P rpl22p 674759 - 675208 + | 50S ribosomal protein L22P TERM 446 675506 - 675495 - gf 73 -3 -5.20216 | GATAGCATCAAAAAA GATA GCAC TATC ACTTGAAAAGGGCTG rps3p 675205 - 675858 + | 30S ribosomal protein S3P TERM 447 675982 - 675972 - gf 71 -6.8 -3.96068 | TGAGGTCAATAAGAA GGCA GAT TGCC AGGGTATTAACTGTT rpmC 675821 - 676018 + | 50S ribosomal protein L29 PTO0648 676015 - 676314 + | translation initiation factor Sui1 rps17p 676601 - 676921 + | 30S ribosomal protein S17P rpl14p 676922 - 677320 + | 50S ribosomal protein L14P rpl24p 677330 - 677794 + | 50S ribosomal protein L24P PTO0652 677751 - 678455 + | 30S ribosomal protein S4e rpl5p 678452 - 678982 + | 50S ribosomal protein L5P rps14P 678984 - 679142 + | 30S ribosomal protein S14P rps8p 679152 - 679541 + | 30S ribosomal protein S8P TERM 448 679606 - 679583 - g 79 -8.9 -4.04474 | overlap 679569 ACAGGCTGAGATAAA GCTGCCTGA TGATGT TCAGGCAAC AATGGAAAATAACGA rpl6p 679551 - 680093 + | 50S ribosomal protein L6P rpl32e 680086 - 680490 + | 50S ribosomal protein L32e rpl19e 680487 - 680963 + | 50S ribosomal protein L19e rpl18p 680941 - 681417 + | 50S ribosomal protein L18P rps5p 681419 - 682084 + | 30S ribosomal protein S5P TERM 449 682107 - 682093 - g 78 -10 -3.31792 | GGATTAGGGGCAGAA CCGGTT TAA AACCGG CGGCGAAAAAAACCA rpl30p 682062 - 682553 + | 50S ribosomal protein L30P rpl15p 682534 - 682944 + | 50S ribosomal protein L15P TERM 450 683183 - 683173 - g 75 -2.4 -5.4505 | opp_overlap 683173 TCCGGCAATAAAAAA GGCC AAG GGTC ATGTTCCATTTAAAT PTO0663 682934 - 684697 + | preprotein translocase SecY TERM 451 685072 - 685059 - g 71 -3.8 -4.90519 | overlap 685064 AAATTAAAAAAAGAA GGGA AGAGGA TCCC ACAAGGCACAGGGAC PTO0664 684698 - 685243 + | adenylate kinase TERM 452 685674 - 685686 + G 71 -4.1 -4.94972 | GCCACTGTTCGTCAT GGAGA TCT TCTTC TTTTTGATTATAATA PTO0665 685243 - 685929 + | hypothetical protein PTO0666 685931 - 686455 + | cytidylate kinase TERM 453 686835 - 686851 + GF 72 -5.1 -4.71482 | opp_overlap 686835, overlap 686827 686850 TGAACTGCTTGAAAT GGATGAG AAA TTCGTCC TTTTTAAGGTTTGCT PTO0667 686470 - 687519 + | H/ACA RNA-protein complex component Cbf5p PTO0668 687323 - 688120 + | Nop56p-related protein PTO0669 689494 - 688112 - | amidophosphoribosyltransferase TERM 454 688505 - 688521 + g 72 -7.3 -3.96932 | overlap 688489 CCTGCTTTTTTGATC GGGCATT ATA AATGTCC TTTCTGAATATCTGT TERM 455 689434 - 689423 - G 73 -7.2 -4.07568 | overlap 689407 GCCGCCGCCGGAAAA GCCG ATGA CGGC ACAATCCTCATTTAC PTO0670 689857 - 689609 - | small nuclear ribonucleoprotein PTO0671 690138 - 690668 + | isochorismatase PTO0672 690837 - 692609 + | ATP-dependent DNA ligase PTO0673 693049 - 692612 - | single-strand DNA-binding protein PTO0674 694227 - 693094 - | transporter TERM 456 693526 - 693541 + g 80 -6.2 -5.04325 | opp_overlap 693526, overlap 693524 TGAGGCTGGAATCCA TGCATA TATG TATGCA TTTTTATAATTTACA PTO0675 695020 - 694217 - | ROK family transcriptional regulator TERM 457 695501 - 695486 - g 79 -6.2 -4.87665 | GGCCAGGGATAAAAA TGCAAT CACA ATTGCA ATGACAGGTTCAAAC PTO0676 695097 - 695645 + | phosphoheptose isomerase PTO0677 696465 - 695647 - | cobalamin periplasmic binding protein PTO0678 697427 - 696489 - | hydrolase PTO0679 697925 - 697467 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 458 697656 - 697643 - G 71 -3.1 -5.06816 | ACCCCTCAATAAAAA CAATG TCGC CATCG TTTATGATATTTTTT PTO0680 698071 - 699048 + | Met-10+ protein PTO0681 699114 - 700088 + | oligopeptide ABC transporter Opp1, permease protein TERM 459 700382 - 700400 + G 72 -5.2 -4.77036 | opp_overlap 700380 GCAACATCATCAACG CCAGAGGG CAG CTATCTGG TTTTTGGTGCTGGCC TERM 460 701574 - 701554 - g 70 -6.9 -3.79251 | opp_overlap 701555, overlap 701558 TACTTTATCAGGAAA TTCATTCCC GCT GGGAACAAA CTCAGAGGGCAATGA PTO0682 700091 - 702238 + | oligopeptide ABC transporter Opp1, permease protein PTO0683 702235 - 704397 + | oligopeptide ABC transporter Opp1, ATP binding protein TERM 461 704674 - 704706 + G 71 -4.4 -4.84529 | AATTAATAATGACAC TTATATATATAGGT ATTGG ACTAATATATATAA TTTTTGCATTTCTAA PTO0684 704394 - 704735 + | hypothetical protein PTO0685 704824 - 708708 + | oligopeptide ABC transporter Opp1, extracellular binding protein PTO0686 708818 - 709450 + | proteasome beta subunit PTO0687 709480 - 711396 + | cleavage and polyadenylation specificity factor, 100 kDa subunit TERM 462 712194 - 712222 + G 75 -8.3 -3.73775 | opp_overlap 712200, overlap 712196 GCGGCGATATAATGT TATATACAAACCT AAC AGGTTTGTACATG TTTCATAACAATCCA TERM 463 712196 - 712220 + G 74 -8.7 -3.45324 | opp_overlap 712200, overlap 712194 GGCGATATAATGTTA TATACAAACCT AAC AGGTTTGTACA TGTTTCATAACAATC TERM 464 712216 - 712200 - g 73 -9.5 -2.92921 | opp_overlap 712196 712194 ATATAATGTTATATA CAAACCT AAC AGGTTTG TACATGTTTCATAAC TERM 465 712956 - 712946 - g 71 -4.6 -4.82333 | ATAACAAGTGAAAAA CCGG TTA CCAG CATTGCAAGGCCAAT PTO0688 711431 - 713056 + | hypothetical protein PTO0689 713744 - 713073 - | putative translaldolase PTO0690 714691 - 713741 - | transketolase subunit B PTO0691 715601 - 714693 - | transketolase subunit A PTO0692 715629 - 716144 + | ferripyochelin binding protein cobS 716132 - 716857 + | cobalamin synthase PTO0694 717246 - 716860 - | hypothetical protein PTO0695 717355 - 717855 + | ArsR family transcriptional regulator PTO0696 717856 - 718881 + | tRNA 2'-O-methylase PTO0697 719524 - 718865 - | ribosome biogenesis protein TERM 466 719404 - 719432 + g 79 -4.7 -5.28942 | opp_overlap 719407 719410, overlap 719407 GCATGTAATTTGAAT CAAGAAGCATATA ATT TATATCCTTCTTA TTTTTATTTGCCATC TERM 467 719407 - 719429 + g 79 -6.4 -4.72696 | opp_overlap 719407 719410, overlap 719404 TGTAATTTGAATCAA GAAGCATATA ATT TATATCCTTC TTATTTTTATTTGCC PTO0698 720559 - 719555 - | putative CaaX prenyl protease 1 PTO0699 720630 - 720884 + | hypothetical protein PTO0700 720938 - 721849 + | phosphoserine phosphatase PTO0701 721889 - 722326 + | hypothetical protein PTO0702 723389 - 722304 - | mannose-1-phosphate guanyltransferase TERM 468 722974 - 722986 + g 72 -9.1 -3.31248 | ATTCCAAACTGGCTT GGGTC ATC GACCC TTGTAAGAACTATTG PTO0703 723469 - 723792 + | ribosomal protein PTO0704 723789 - 724328 + | acetyltransferase TERM 469 724505 - 724471 - g 83 -6.6 -5.1287 | opp_overlap 724463 724471 TTTACATTGAAAAAA GCTTTTCATTGAATTA TAA TTATTCCATAAAAAGC CTTGGTTTAAAATAT TERM 470 724940 - 724953 + G 75 -2.3 -5.44119 | AGATTCAATCATTCA CCTGT CAGG ACCGG TTTTTTTAAGCTCAA PTO0705 724365 - 725366 + | oligopeptide ABC transporter Dpp2, permease protein PTO0706 725356 - 726099 + | oligopeptide ABC transporter Dpp2, permease protein PTO0707 726080 - 727006 + | hypothetical protein PTO0708 729793 - 727001 - | oligopeptide ABC transporter Dpp1, extracellular binding protein TERM 471 727905 - 727920 + g 78 -3.2 -5.47964 | opp_overlap 727905, overlap 727906 727910 TATACCTCATAAGGA CCGTCT GAAA AGACGC TTTTTATTGTTTTAT TERM 472 728543 - 728556 + g 75 -4.5 -5.05079 | TCCAACAAAGAAGTC CAGGT AATA GCCTG TTTTTGTCTCGTTCT PTO0709 731428 - 729827 - | transmembrane glutathione-dependent Na/H antiporters TERM 473 730410 - 730390 - G 74 -7.5 -3.97741 | overlap 730407 AAAGTGCAACAACAA GCAGTGCCG CGT CAACACCGC CGTTTACAGAGGTGC PTO0710 732040 - 731483 - | hypothetical protein PTO0711 732188 - 733180 + | N-ethylammeline chlorohydrolase TERM 474 733423 - 733391 - g 72 -2 -5.34365 | gap 1, opp_overlap 733395 733399 733416, overlap 733395 733409 GCACAACAATAAAAA TGGA-GGATGCCTTA TTAA CAAGGCTTCCTTACA TTGAGGATCTGTATA ribB 733219 - 733890 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 475 734331 - 734319 - g 70 -9.1 -3.14602 | overlap 734317 GGCATGGGATTAAGA CAGGG ATT CCCTG ATAAGGGGCCTGCTG PTO0713 733887 - 734366 + | riboflavin synthase ribH 734376 - 734786 + | riboflavin synthase subunit beta rpl10e 735146 - 735676 + | 50S ribosomal protein L10e PTO0716 736545 - 735691 - | putative arginase PTO0717 736934 - 736545 - | translation initiation factor IF-5A PTO0718 737735 - 737121 - | ribosomal protein L11 methyltransferase TERM 476 737276 - 737292 + g 75 -3.1 -5.32699 | CGTATGCCCTGGCAT TATGTAT TGA ATATATA TTTTTTGATATTTCC PTO0719 738018 - 737716 - | hypothetical protein TERM 477 738226 - 738242 + G 70 -5.1 -4.53036 | opp_overlap 738226, overlap 738221 738240 TTTCATCTATTCAAA GCCAC AGGTATG GTGGC TTTTAGTCTTTATAG TERM 478 738445 - 738463 + G 73 -8.2 -3.62572 | opp_overlap 738444 ATCAGGCGAAATCAG CGAAAAGG GTG CCTTTTTG TTTGGAATCATACTA TERM 479 738986 - 738974 - g 86 -9.1 -4.56969 | opp_overlap 738972 738974 AAGCCCACAAAGAAA GCCTC CAT GAGGC TATTTATCTACACGG TERM 480 738974 - 738986 + G 74 -9.1 -3.61232 | opp_overlap 738974, overlap 738972 AAGCCCACAAAGAAA GCCTC CAT GAGGC TATTTATCTACACGG PTO0720 738170 - 739066 + | protoheme IX farnesyltransferase PTO0721 739285 - 739070 - | snRNP Sm-like protein PTO0722 739447 - 739295 - | hypothetical protein PTO0723 739994 - 739434 - | exosome complex RNA-binding protein Csl4 PTO0724 740079 - 741623 + | archaeosine tRNA-ribosyltransferase TERM 481 741638 - 741628 - f 71 -2.6 -5.48063 | AGGTAAGATAAAAAA TTAA TAA TTAA AAAAGATACAAAATA PTO0725 741654 - 742892 + | metal-dependent hydrolase PTO0726 743128 - 742895 - | hypothetical protein TERM 482 743234 - 743247 + H 76 -8.1 -3.79138 | opp_overlap 743229 TAAAATATATCTATT GGTGC AATT GCACC TTTGATAACTGTATT PTO0727 743295 - 743900 + | putative peroxiredoxin PTO0728 743942 - 744793 + | 2,5-diketo-D-gluconic acid reductase PTO0729 744836 - 745672 + | daunorubicin resistance ATP-binding protein DrrA PTO0730 745662 - 746384 + | daunorubicin resistance ATP-binding protein DrrB PTO0731 746471 - 746629 + | hypothetical protein PTO0732 747531 - 746626 - | ornithine carbamoyltransferase PTO0733 748875 - 747553 - | resistance protein TERM 483 747693 - 747673 - G 73 -8.3 -3.69605 | opp_overlap 747677, overlap 747669 CTCATTTAAAATGAA GAGATCTCC AAG GGAGATATC TATACCGGAATAAAA TERM 484 747919 - 747895 - G 80 -7.9 -4.46775 | TATGTAAAACATAAA CCTACCTATAA ATA TTATCGGCAGG GATTCAGCCAGGGCA PTO0734 749850 - 748891 - | thioredoxin reductase PTO0735 751548 - 749908 - | thermosome subunit TERM 485 750927 - 750940 + g 84 -5.9 -5.18726 | overlap 750926 750928 TGAACTGTGTGTCTG TGGCG CTTC CGCCG TTTTTCTTGTCAACC PTO0736 753115 - 751598 - | Thy1 protein TERM 486 753121 - 753111 - G 72 -5.4 -4.6902 | TCATAATTTGAAAAA TCCA TAA TGGA TTAGCATAAAAGTAT PTO0737 753197 - 754039 + | NADH-dependent oxidoreductase PTO0738 754493 - 754041 - | hypothetical protein PTO0739 754577 - 754957 + | hsp 20 family small heat shock protein PTO0740 756476 - 754959 - | ubiquione biosynthesis protein TERM 487 755434 - 755453 + g 74 -5 -5.00467 | CTGCCTGAGAAGTTT GCAATTGA TATC TCTATTGC TTTTCTTATTATTCC radA 757515 - 756544 - | DNA repair and recombination protein RadA PTO0742 758548 - 757502 - | glyceraldehyde-3-phosphate dehydrogenase PTO0743 758613 - 759065 + | ribosomal protein s18 alanine acetyltransferase PTO0744 760324 - 759068 - | S-adenosylmethionine synthetase TERM 488 760581 - 760593 + G 71 -3.3 -5.03145 | opp_overlap 760581 GGCCGTGTAAAGACA CTGCA TCC TGCCG TTTTTTCAGGCATTC TERM 489 761191 - 761202 + G 70 -7.2 -3.72893 | opp_overlap 761191 TAGTAAAGCACAGGA CGCC CTCA GGCG TTTCATCAGCAGATA TERM 490 761802 - 761785 - g 74 -9.9 -2.84417 | overlap 761782 GAATAAAGGCAATCA TTGAGCC CGGT GGCTCAA TACGCGATAATGATG purH 760401 - 761885 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PTO0746 762753 - 761890 - | hypothetical protein PTO0747 764986 - 762725 - | DNA topoisomerase I TERM 491 762978 - 762998 + gH 73 -4 -5.14682 | TTTCCACCATCAGCC GGGCATGT TCCAT ATATGTCC TTTTCTTTATTGTAA TERM 492 763462 - 763473 + gH 75 -7.2 -4.17316 | ATTTTATAAATCCTT CGCC CAGC GGCG TTATTTTAACAGGGT TERM 493 764227 - 764247 + gH 75 -2 -5.38321 | overlap 764236 764238 764239 764241 TTACCCTTCCCGGCA TATTTTTT ACCTC AGAAAATA TTTTTTCTGCTGTTT TERM 494 765110 - 765096 - H 82 -4.4 -5.7946 | opp_overlap 765079 765101 TTTTCAATAAAAAAA TTTTTT ATA AAAAAA CTTTATATATCTATG PTO0748 765123 - 765416 + | hypothetical protein PTO0749 765797 - 765408 - | transferase PTO0750 766841 - 766125 - | hypothetical protein TERM 495 766658 - 766643 - G 100 -2.6 -6.17268 | TTATAATAAAAAAAA CAAAAA AAGT TCTTTG AAAAAATATTAGAAA PTO0751 767642 - 767232 - | dehydrogenase PTO0752 767776 - 768435 + | HTH DNA-binding protein PTO0753 769154 - 768465 - | DUF 57 protein TERM 496 769799 - 769785 - g 81 -7.2 -4.71828 | opp_overlap 769784 ACGGTATCAAGAAAA CTTAAG AGG CTTAAG AATTTAAATCTTATA PTO0754 769263 - 769892 + | putative transcription regulatory protein PTO0755 770305 - 769889 - | putative DNA-binding protein PTO0756 770384 - 771181 + | aldose1-epimerase PTO0757 772188 - 771178 - | zinc-binding dehydrogenase TERM 497 771207 - 771217 + g 77 -6.8 -4.55093 | TTACGATTCTGCCCA TGGC CTC GCCA TTTCTTATTATCTCA TERM 498 771801 - 771817 + g 70 -5.8 -4.24786 | opp_overlap 771801 CGTTGAGCTTTACAA GGTCAG TCTCC CTGGCC TTTATATATTCTGAA TERM 499 772787 - 772798 + G 70 -5.8 -4.26079 | TTCAACTGGAATATT GGCT TTAT AGCC TTTTACATCGTTTCA TERM 500 773460 - 773486 + G 76 -8.8 -3.77832 | opp_overlap 773459 773466 GCTTTGCAACACTAT CATCAAGAATAG GTG CAATTCTTGGTG TTGTTGCATTTCCAG PTO0758 772331 - 773626 + | sugar transport protein TERM 501 774059 - 774073 + G 91 -7 -5.18726 | opp_overlap 774058 TATACGGTGATAAGG GCCAGG ATG CCGGGC TTTTTATTATAAGAA PTO0759 773623 - 774153 + | putative amidase TERM 502 774809 - 774823 + G 81 -10 -3.72576 | opp_overlap 774804 774802 CAAGAGTATATGTTC CAGGAC ACG GTCCTG TTTCATACGGAACAG PTO0760 774208 - 775095 + | beta-lactamase PTO0761 775138 - 775725 + | transcriptional activator tenA PTO0762 775879 - 776562 + | hypothetical protein PTO0763 776640 - 777119 + | transferase PTO0764 777832 - 777116 - | oligopeptide ABC transporter Dpp1, ATP binding protein PTO0765 778721 - 777810 - | oligopeptide ABC transporter Dpp1, ATP binding protein PTO0766 780286 - 778721 - | amino acid permease TERM 503 779998 - 779982 - G 100 -13.7 -3.83205 | ATTGGGTACATCAAA CCTGCGG TAA CCGCAGG TACAGGTCCATAGGC TERM 504 780965 - 780981 + H 70 -8.7 -2.64933 | opp_overlap 780934 780959 TTGAACCGACGACCG CTCGGTT AAC AGCCGAG TGCTCTACCTAGCTG TERM 505 781082 - 781098 + H 70 -8.7 -2.65264 | opp_overlap 781051 781076 TTGAACCGACGACCG CTCGGTT AAC AGCCGAG TGCTCTACCTACTGA TERM 506 781691 - 781679 - g 70 -7.7 -3.64541 | overlap 781677 CCATCAAACCAAATA CCACT CCT AGTGG ACCGAGGGGGATTTG PTO0767 781348 - 781707 + | site-specific integrase/recombinase PTO0768 781862 - 782248 + | hypothetical protein PTO0769 782564 - 784078 + | hypothetical protein PTO0770 784398 - 784676 + | hypothetical protein PTO0771 786056 - 784809 - | transporter PTO0772 787250 - 786105 - | N-acyl-L-amino acid amidohydrolase TERM 507 787671 - 787649 - g 75 -2.1 -5.38249 | gap 1, opp_overlap 787652, overlap 787652 ATGAATCAGAAAAAA CAGGTATCAA TGAT TCGATAC-TG CTTGTAAGCGTAATA PTO0773 787330 - 787914 + | hypothetical protein PTO0774 788805 - 787903 - | putative thermopsin precursor TERM 508 788664 - 788648 - G 75 -4.5 -5.04733 | overlap 788650 GAATCATAAACAAAA CATGTAA TAT TTACATA CCATTCTGTTCCCTC TERM 509 788983 - 788959 - g 89 -8 -5.14965 | gap 1 ATCTTGATGAAAAAA GATTTG-GGTG GTTT CACCTCAAATC AATGATAACGACCGG PTO0775 788925 - 790304 + | sugar transporter TERM 510 790366 - 790379 + G 76 -5.3 -4.98531 | opp_overlap 790366, overlap 790373 GAACTCCTGGGAAAG GGTTT TTTC AAACC TTTTTGATTTCAAGG TERM 511 790444 - 790434 - g 76 -5.4 -4.98758 | AAAAACGTATAAAAA TTCC AGA GGAA ATAAACATAAGAAGA PTO0776 790301 - 790915 + | phosphoserine phosphatase PTO0777 792042 - 790912 - | hypothetical protein PTO0778 792777 - 792064 - | alanyl-tRNA synthetase PTO0779 792875 - 794056 + | resistence protein NorA truA 794022 - 794777 + | tRNA pseudouridine synthase A PTO0781 794829 - 795134 + | hypothetical protein pheT 795158 - 796720 + | phenylalanyl-tRNA synthetase subunit beta PTO0783 797671 - 796709 - | hypothetical protein PTO0784 797689 - 799017 + | transporter PTO0785 799086 - 800183 + | oligosaccharyl transferase STT3 subunit TERM 512 803077 - 803059 - g 81 -10.4 -3.57808 | overlap 803057 803062 803067 TTTAACCTACAAATA TAACAGCA CGC TGCTGTTA ACATCAAATAATGAT TERM 513 803074 - 803062 - g 74 -7.7 -3.91369 | overlap 803059 803057 803067 AACCTACAAATATAA CAGCA CGC TGCTG TTAACATCAAATAAT PTO0786 800345 - 805258 + | oligosaccharyl transferase STT3 subunit TERM 514 805397 - 805413 + G 79 -8.7 -4.0371 | GGGCATTGTCTATGA GGGTGAG AAC TTCACCC TTTATATAAACGGTA PTO0787 805266 - 806051 + | hypothetical protein PTO0788 806701 - 806060 - | hypothetical protein TERM 515 806423 - 806441 + g 79 -11 -2.95894 | TGCCATTACCGCTAT TCCGGGTC TTG GACCTGGA TCTATGCCTATTATA PTO0789 807898 - 806756 - | multidrug resistance protein PTO0790 808901 - 807936 - | hypothetical protein TERM 516 809357 - 809369 + G 75 -7.7 -4.07687 | AGGCATTAGGCGAGG TTGCC CCT GGCAA TTTTAACAAAAAGGT PTO0791 809032 - 810378 + | 4-aminobutyrate aminotransferase PTO0792 810892 - 810371 - | hypothetical protein TERM 517 810539 - 810554 + g 71 -3.2 -5.08169 | opp_overlap 810536 TGTGAAAAAATGCCA GGGATC ACCT GATGCC TTTTTTAACCTGTAT PTO0793 811388 - 810897 - | acyl-CoA hydrolase PTO0794 811853 - 812428 + | hypothetical protein PTO0795 813113 - 812496 - | ArsR family transcriptional regulator PTO0796 813164 - 814360 + | efflux family protein PTO0797 815732 - 814386 - | sugar transporter TERM 518 815841 - 815828 - H 74 -2.5 -5.6473 | opp_overlap 815832 815834, overlap 815832 ATAATATTAAAAAAA TAAAT ATTA ATTTA ATAATATGTTAAATA TERM 519 815844 - 815832 - H 70 -3.5 -5.23943 | opp_overlap 815832 815834, overlap 815828 TATTAAAAAAATAAA TATTA ATT TAATA ATATGTTAAATAAAT PTO0798 815948 - 817588 + | hypothetical protein TERM 520 818045 - 818035 - g 88 -6.8 -5.28942 | TAGGTTAAAGAAAAA CAGG ATT CCTG AAGATGACTTTATAA PTO0799 817610 - 818104 + | transcriptional regulator TERM 521 818556 - 818539 - g 74 -7.7 -3.91402 | GCAGATAAATTTAAA TGACCCA TGGT CGGGTCA CATGGCCCTTCCAGG PTO0800 818462 - 818896 + | phosphohydrolase PTO0801 819152 - 820072 + | sulfur oxygenase reductase PTO0802 821187 - 820075 - | DNA primase small subunit PTO0803 821151 - 821600 + | hypothetical protein TERM 522 822313 - 822300 - g 71 -6.7 -4.11394 | ATTGCAGCCTTAAAA TCTGC AGTT GCAGA TGAATCATCAATGAA PTO0804 821706 - 822410 + | proteasome subunit alpha PTO0805 822495 - 823058 + | hypothetical protein PTO0806 824580 - 823063 - | membrane metalloprotease PTO0807 824775 - 825911 + | dihydroorotate dehydrogenase PTO0808 826093 - 826839 + | phosphoribosylformylglycinamidine synthase subunit I PTO0809 827451 - 826840 - | hypothetical protein PTO0810 827686 - 827405 - | hypothetical protein cobD 828644 - 827727 - | cobalamin biosynthesis protein PTO0812 830043 - 828634 - | cobyric acid synthase PTO0813 831031 - 830009 - | histidinol-phosphate aminotransferase TERM 523 830548 - 830534 - GH 89 -3.6 -5.75342 | opp_overlap 830508 GTTTTTTAAAAAAAA GATAAA TGA TTCATC AATAAATAGCAGGGC TERM 524 832575 - 832564 - g 71 -4.4 -4.7497 | TCTACCTATCAAAAA GATC CCTT GATC CTGTACAGGATGAGC TERM 525 833573 - 833561 - g 70 -6.3 -4.25848 | AATGCGTGATGAAAA GTATC TGA GATAC CGTGCATGGGTTGAA PTO0814 831144 - 834200 + | tricorn protease TERM 526 834828 - 834816 - g 76 -4.1 -5.34365 | GGATAATAACAAAAA TCCTG ATG CAAGA ATAGATGTTCCTGGA PTO0815 834250 - 835689 + | permease, multidrug resistance protein TERM 527 837069 - 837052 - g 76 -4.9 -5.07486 | gap 1 TACTTGGAATAAAAA GCGAG-AT TGC ATCCTCGC AGATCGTCTGCAGGG PTO0816 836403 - 837758 + | adenylosuccinate lyase PTO0817 837751 - 838329 + | hypothetical protein PTO0818 838374 - 839033 + | hypothetical protein PTO0819 839033 - 839383 + | rhodanese-related sulfurtransferase rps17E 839615 - 839385 - | 30S ribosomal protein S17e PTO0821 840087 - 839653 - | universal stress protein PTO0822 840519 - 840343 - | hypothetical protein TERM 528 840688 - 840656 - H 90 -7.3 -5.09173 | TAATATTGTAAAAAA TCCATAAAAAAATAT TAT ATATTCTTTTATTGA CGTTAATTTAAGATA PTO0823 841135 - 841563 + | hypothetical protein PTO0824 843279 - 841564 - | hydrogenase 4 subunit B TERM 529 841652 - 841662 + g 76 -2.6 -5.41746 | GAACTGGACATTATT TTAT ATA ATAA TTTTTTTGCAAACTT TERM 530 841973 - 841955 - G 70 -3 -5.15634 | opp_overlap 841958, overlap 841958 GACTCTATTAAAAAA CCATTGGC TAT GCCTATCG ATTCAAATCCAGATA PTO0825 843884 - 843276 - | formate hydrogenlyase subunit 7 PTO0826 845026 - 843881 - | formate hydrogenlyase subunit 5 TERM 531 844213 - 844224 + g 73 -4.4 -5.00895 | TTGACATAGCATCTC CAGA ATCA TCTG TTTTTATCTCATAGC TERM 532 844298 - 844315 + g 90 -12.7 -2.87944 | ATATTTATATCCTGC GGCCCTG GCAG CAGGGCC TGTCATATCATCATC PTO0827 846353 - 845013 - | hydrogenase 4 subunit F TERM 533 845315 - 845325 + gr 72 -5.4 -4.55383 | GTAAAAGCGAGATCC CAAG AAC CTTG TTGTTTTTGTAAATT TERM 534 846044 - 846032 - GR 70 -6.3 -4.12188 | TCATGACTGTGAAAA GCATT GTG AATGC AAACAATGAATTAAG PTO0828 846933 - 846325 - | hypothetical protein PTO0829 847934 - 846933 - | formate hydrogenlyase subunit 4 PTO0830 848046 - 849191 + | acyl-CoA dehydrogenase TERM 535 849222 - 849206 - f 74 -5.3 -4.8048 | opp_overlap 849194 849217, overlap 849217 GTTTTATATTAAAAA TTTATAT AAT ATATAAA GATTTATATTCAATG PTO0831 849263 - 849874 + | hypothetical protein TERM 536 850094 - 850104 + G 71 -4 -4.95155 | overlap 850085 CCTGATGGCCTCGGG CATT TAC AATG TTTTTATAATATCAC PTO0832 849909 - 850538 + | hypothetical protein PTO0833 850671 - 851153 + | acetyltransferase PTO0834 852723 - 851761 - | oxidoreductase PTO0835 852802 - 853860 + | FeS oxidoreductase PTO0836 854472 - 853837 - | prephenate dehydrogenase PTO0837 854981 - 854463 - | chorismate mutase PTO0838 855100 - 856047 + | thiamine monophosphate kinase TERM 537 856024 - 856053 + F 70 -6.6 -4.0371 | opp_overlap 856024 TCACACGGCTATGAA CATTTCCTAAAG GAGCCG TTTTAGGGAATG TTTATATAGAAAATA PTO0839 856094 - 856636 + | GrpE protein dnaK 856614 - 858455 + | molecular chaperone DnaK PTO0841 858464 - 859537 + | chaperone protein DnaJ PTO0842 860262 - 859534 - | hypothetical protein PTO0843 860939 - 860310 - | hypothetical protein PTO0844 863357 - 861606 - | amino acid transporter TERM 538 862496 - 862482 - G 74 -8.6 -3.6682 | opp_overlap 862482 TGCCAGCCAGCCAAA GCCTAT GTC ATAGGC TATCCTTGCAAAGGG PTO0845 863477 - 864121 + | ribulose-phosphate 3-epimerase PTO0846 865071 - 864118 - | zinc-binding alcohol dehydrogenase TERM 539 864420 - 864410 - G 70 -8.2 -3.24021 | opp_overlap 864410 864409 TCCTCAAATATTGAA CCGC CAA GCGG ATTTATAATATAATC TERM 540 864974 - 864960 - G 74 -10 -2.6563 | opp_overlap 864958, overlap 864957 CTGTTGAATAATCCA CCGGAT TTA ATCCGG CCATTGTTATTTTTA PTO0847 865814 - 865128 - | TPR repeat-containing protein TERM 541 865984 - 865969 - g 79 -4.8 -5.19916 | AAAAGAGCTAAAAAA CTTTTT CGAG AAAAAG CTGGATGCATGTGAC PTO0848 865907 - 866944 + | geranylgeranyl pyrophosphate synthase PTO0849 867771 - 866941 - | DNA integration/recombination/invertion protein TERM 542 867248 - 867211 - G 72 -2.1 -5.28778 | opp_overlap 867212, overlap 867212 ATTACTGATAAAAAA CGTATCACCAGGATA CTTTAATC TATCATTGTAATACG ATCTTAATATCTCAG TERM 543 867441 - 867451 + g 78 -5.4 -5.13521 | TGTTATTTGATGAGG CCTT TAT AAGG TTTTTTGCCTCATTT TERM 544 868419 - 868435 + G 70 -7.9 -3.60525 | opp_overlap 868417 868421 AAAGGGGGAGGAATT CAGCAGC ACG GCTGCCG TTATGTCTGAATACG egsA 867841 - 868893 + | NAD(P)-dependent glycerol-1-phosphate dehydrogenase PTO0851 868994 - 869425 + | hypothetical protein PTO0852 869430 - 870545 + | translation-associated GTPase rps12P 870550 - 870978 + | 30S ribosomal protein S12P PTO0854 870981 - 871544 + | 30S ribosomal protein S7P TERM 545 871565 - 871575 + T 73 -4 -5.29385 | TTTTAATAAATTTCA TTTG CCT CAAA TTTTTTCATTACCTT PTO0855 871866 - 871552 - | transposase TERM 546 871944 - 871932 - H 77 -4.9 -5.14563 | TTTTTTATTAAAAAA TACAT TAT ATGTA TTAAAATAAAAATTT TERM 547 872962 - 872948 - g 77 -5.8 -4.84359 | TGAGCTCGAGAAAAA GATAAA CGA TTTATC AGGCAATGAGATAAA TERM 548 872999 - 872983 - g 80 -5.9 -5.06016 | ATGAGATAAACAAAA TAAGATC AGA GATCTCA TCAATAAACGTTGAG PTO0856 872121 - 875573 + | chromosome partition protein smc PTO0857 875566 - 876270 + | hypothetical protein PTO0858 876295 - 877428 + | serine hydroxymethyltransferase TERM 549 877521 - 877541 + G 73 -8.3 -3.63515 | opp_overlap 877521 877516 CAATAATGAAGGATA CCGGCAT AAAGCAG ATGCCGG TTCTTGACGGTAAGA PTO0859 877433 - 878512 + | inosine-5'-monophosphate dehydrogenase PTO0860 878509 - 879861 + | zinc metalloprotease TERM 550 880593 - 880574 - gT 77 -8.6 -3.55761 | CATTGATCTTTTAAA TTCCAGGG TCGG CCCTGAAA ATCTAACATTAAATG PTO0861 879813 - 881126 + | PmbA protein PTO0862 883492 - 881123 - | tricorn protease interacting factor F2 TERM 551 882677 - 882698 + g 70 -2.9 -5.03747 | ATGCGCTATCTCATG GGCTATGAC ATCT GCTATGGCC TTTTTTACAGAGTTT PTO0863 883657 - 883815 + | hypothetical protein TERM 552 883849 - 883860 + F 72 -3 -5.27709 | opp_overlap 883849 TATTCATGATAATAC TGTT TTTA AACA TTTATTTTTTTATAG PTO0864 884083 - 885495 + | cytochrome ubiquinol oxidase subunit I TERM 553 885753 - 885767 + G 74 -5.6 -4.77036 | TTAATACCGCTTGTC GGCATC TTT GTTGCC TTTTTAATACTAAGA PTO0865 885501 - 886478 + | hypothetical protein PTO0866 886572 - 887159 + | DNA-directed RNA polymerase subunit E' rpoE 887156 - 887350 + | DNA-directed RNA polymerase subunit E'' PTO0868 887328 - 887825 + | hypothetical protein rps24e 887812 - 888120 + | 30S ribosomal protein S24e PTO0870 888120 - 888275 + | 30S ribosomal protein S27ae PTO0871 888571 - 888272 - | hypothetical protein PTO0872 888662 - 888907 + | hypothetical protein PTO0873 890126 - 888894 - | replication factor C large subunit TERM 554 889517 - 889533 + g 88 -6.5 -5.24989 | overlap 889520 TTATATCGTTTTCAG GCAGGGA TTT TCCCTCC TTTTTTAATATGTAA PTO0874 890452 - 890126 - | methionyl-tRNA synthetase PTO0875 890546 - 891133 + | 50S ribosomal protein L15e PTO0876 891133 - 891876 + | hypothetical protein PTO0877 892113 - 891877 - | hypothetical protein gltX 893786 - 892140 - | glutamyl-tRNA synthetase TERM 555 893146 - 893174 + gr 71 -4.5 -4.72729 | overlap 893144 893160 AAATGCACGCCAGGA TCCATGGATCTGT CTG GCAGGGCCATTGA TTTTAATTTTAATTC TERM 556 893342 - 893361 + gr 70 -7.2 -3.58037 | CTTCAGGTATCATAT CATAGGCA TCTA TGTCTATG TTTCCGGGATTGGTA TERM 557 893734 - 893745 + gr 73 -4.4 -4.88407 | TCGGCCCTTCCATCA TGCA AGTA TGCA TTTTTAATTGCCTGC PTO0879 894723 - 893749 - | GTP-binding protein PTO0880 899764 - 894761 - | ATP-dependent helicase TERM 558 895660 - 895674 + g 73 -4.3 -4.85822 | opp_overlap 895660, overlap 895650 CATTTGTATTGCAAA GGTAT CTGCC ATACC TTTTGTATTTATCAT TERM 559 898119 - 898131 + g 71 -4.1 -4.95896 | TCACTTACCATAACC CTGTT TCT AACGG TTTTTATAAATTTAT TERM 560 899217 - 899245 + g 78 -10.5 -3.10796 | AGAGATCCGCGCTTT GTTGATGAGAT CTCATGT ATCTCATCAAC TATTACATACTCAAC TERM 561 900256 - 900242 - g 70 -8.6 -3.16944 | overlap 900240 ATCAGCAATGGAATA CCTGAA GGA TTCAGG ATACATAAGGGATAT TERM 562 900547 - 900535 - g 70 -4.7 -4.65895 | TTGCCTATTTAAAAA GGCTG TCA CTGCC GATACCGATGTCAAG PTO0881 899856 - 900653 + | aldo/keto reductase PTO0882 900650 - 901267 + | hypothetical protein PTO0883 901340 - 902011 + | hypothetical protein TERM 563 903093 - 903105 + G 77 -6.3 -4.7657 | overlap 903083 GAAAATCATGTACTA TGATG TAT CATCA TTTTTAAGATTTTTA TERM 564 903791 - 903801 + G 73 -6.8 -4.28361 | CCGATATATGGCTTT GCGA CGA TCGC TTTTCATCAGCTTAC PTO0884 902023 - 903840 + | DNA repair helicase PTO0885 904004 - 903837 - | preprotein translocase subunit SecG TERM 565 903972 - 903959 - G 70 -8.1 -3.3573 | opp_overlap 903953 903966 TAAAGTACCTTATAA GTCCG GCTC CGGAC TGGAAATTTTCATTT PTO0886 905795 - 904260 - | hypothetical protein TERM 566 904460 - 904442 - G 75 -4.6 -5.07486 | GATCCGGAACAAAAA GCATGTTA TTG TAATATGC TGGCTCATCGTGCAA TERM 567 905117 - 905093 - G 71 -9.4 -2.64155 | gap 1 CTTTTGTTAAATGCA GCCACAA-AGG CCTT CCTGTTGTGGC ATTAAACGCAAGTAT TERM 568 905913 - 905903 - R 78 -2.6 -5.85011 | TAAAAATTAAAAAAA TTAT ATC ATAA TAAATGAAAATAAAT PTO0887 907284 - 905944 - | dihydrolipoamide dehydrogenase TERM 569 907517 - 907489 - g 71 -6.7 -4.08064 | overlap 907492 AATGTCCGGTGAAAA CAAGGGATCCA TTCTTGT TGGAACCCCTG AAAAATTAACAGGAA PTO0888 907385 - 907816 + | CBS domain-containing protein TERM 570 908088 - 908069 - g 76 -2.9 -5.38321 | gap 1, overlap 908071 908072 AAACATCATAAAAAA CAT-GCCA AGGGA TGGCGATG CCCTTGCAATCATGG PTO0889 907818 - 908939 + | methylcitrate synthase PTO0890 908969 - 909490 + | methyltransferase PTO0891 910065 - 909622 - | transcriptional regulatory protein TERM 571 909662 - 909674 + g 72 -7.7 -3.83864 | overlap 909652 ATTGTCTGCGATCTC TGGAC GCC GTCCA TTGTTCTAAGCTTTT PTO0892 910159 - 911112 + | asparagine synthetase A PTO0893 911659 - 911270 - | succinyl-CoA synthetase PTO0894 911735 - 912040 + | DNA-directed RNA polymerase subunit M PTO0895 912075 - 913445 + | signal recognition particle protein Srp54 PTO0896 914641 - 913448 - | geranylgeranyl hydrogenase PTO0897 914837 - 914625 - | ferredoxin PTO0898 915567 - 914920 - | endonuclease III TERM 572 915272 - 915283 + g 73 -3 -5.25893 | TAGGTATCCGGGACA TTAC CATT GTAA TTTTTTAATATGTAT carB 918754 - 915599 - | carbamoyl phosphate synthase large subunit TERM 573 917775 - 917787 + g 72 -7.7 -3.76167 | opp_overlap 917775, overlap 917773 ATCTCGTTTAAATTA TAGCC AAT GGCTA TCTTTGTTGATATTC PTO0900 919799 - 918756 - | carbamoyl phosphate synthase small subunit TERM 574 918809 - 918792 - G 78 -5.5 -5.03145 | TAACCTTCCAAAAAA CCATTCG CCAT CGTATGG ACCGGGATGCGCCTC PTO0901 920051 - 920227 + | hypothetical protein PTO0902 920290 - 920541 + | hypothetical protein PTO0903 920538 - 921410 + | hypothetical protein TERM 575 921872 - 921855 - g 70 -2.7 -5.14894 | opp_overlap 921858, overlap 921858 AAAAAAGCATAAAAA TTAGATC CCCA GATCTTA TTAAAAGGCGGTATT TERM 576 921902 - 921913 + G 70 -3 -5.06016 | TATGTAAATGACAGT TACA GATC TGTA TTTTATTTATATGAT TERM 577 922052 - 922038 - g 80 -2.8 -5.56568 | overlap 922040 ACACGATTAAAAAAA TGCTTG TAA CAAGGA AGGCCGAGCTTAAAA PTO0904 921407 - 923017 + | hypothetical protein PTO0905 923574 - 923014 - | hypothetical protein TERM 578 923180 - 923197 + g 70 -6.9 -3.73224 | opp_overlap 923193 TTATCAAGCCTTACC GGCCCAT TTGA AAGGGCC TTTAATGCCCGGTCA TERM 579 923496 - 923507 + g 70 -5.8 -4.33785 | overlap 923498 ATTTTAAAATAACGC CCGT GATA ACGG TTCTTTTATCACTGT PTO0906 924440 - 923574 - | ribose-phosphate pyrophosphokinase PTO0907 925300 - 924479 - | gluconolactonase TERM 580 924703 - 924680 - G 75 -9.6 -3.30453 | TATAACTGATATTAA TGAGCTGCCA TGAA TGGCAACCCA GAGATTATTATTAAT PTO0908 925852 - 925340 - | hypothetical protein PTO0909 926546 - 925887 - | hypothetical protein PTO0910 927623 - 926616 - | 3-isopropylmalate dehydrogenase TERM 581 927193 - 927179 - G 76 -8.6 -3.73224 | CCATCGTGTAGTAAA CCTCAT CAC ATGAGG AACCATCTATTTCTA PTO0911 928090 - 927617 - | 3-isopropylmalate dehydratase small subunit PTO0912 929328 - 928087 - | 3-isopropylmalate dehydratase large subunit TERM 582 928953 - 928963 + g 71 -6.8 -4.1399 | AAACGCATGATAGTG CACC ATA GGTG TTTGTATGTGAATCC PTO0913 930488 - 929328 - | 2-isopropylmalate synthase TERM 583 929466 - 929480 + g 74 -8.6 -3.60201 | overlap 929464 GGATGTTGTCCCGGA GTGCTT TCC AAGCAC TATTCTTCTATTTAA PTO0914 931218 - 930865 - | hypothetical protein PTO0915 931906 - 931211 - | hypothetical protein TERM 584 931788 - 931773 - G 74 -5.4 -4.70534 | TAAATAGATACAAAA GCCTCA AAGA TAAGGC CCCATGAAACAAAAT TERM 585 931826 - 931805 - G 75 -7.5 -4.08958 | opp_overlap 931804 931805, overlap 931803 CCATGAAACAAAATA TCTAAAAAA CGTA TTTTTTAGA ATTATCTTCTCTGCA PTO0916 932835 - 931903 - | hypothetical protein PTO0917 933466 - 932711 - | ABC transporter ATP-binding protein TERM 586 933014 - 933029 + gH 70 -6.2 -4.08216 | TATGGCCTCCTCCCT TCTTGA AATA TCAAGA TTTTCAAAGGGCTCA TERM 587 933080 - 933070 - GH 70 -8.2 -3.2115 | overlap 933060 933059 TAAACCAGCCATTAA GGCC GAT GGCC ATAGCTAATGAAAAT TERM 588 933504 - 933522 + H 77 -4.6 -5.11063 | opp_overlap 933506, overlap 933506 TTTATAATACCATTA AAGTTCAA TTT TTGAACTG TTTTTATTACATGAT TERM 589 933506 - 933520 + H 75 -7.2 -4.17914 | opp_overlap 933506, overlap 933504 TATAATACCATTAAA GTTCAA TTT TTGAAC TGTTTTTATTACATG TERM 590 933520 - 933506 - H 74 -7.2 -3.8572 | opp_overlap 933504 933506 TATAATACCATTAAA GTTCAA TTT TTGAAC TGTTTTTATTACATG TERM 591 933925 - 933935 + G 75 -8.2 -3.75169 | GGAACTTTAGGGATA CCCC GGA GGGG TTTGATAAAATAGTA TERM 592 934003 - 933990 - g 76 -5.3 -5.00616 | opp_overlap 933990 TCCCTGTGCAAAAAA TCATC AATT GATGA ATTCGTTATTTTAAT TERM 593 934225 - 934214 - g 70 -5.8 -4.29227 | TGAATTATCAATAAA GAGG AAAA CCTC TGGAAAGATTTTATC hemA 933876 - 935081 + | glutamyl-tRNA reductase PTO0919 936062 - 935082 - | DNA polymerase TERM 594 935168 - 935145 - G 74 -9.6 -3.14211 | overlap 935164 ATCCTCCTCTATCAA CGGCATGTTC TGCA GAACATGCAG TGCTGATGCAGGATG PTO0920 936685 - 936128 - | hypothetical protein PTO0921 937347 - 936682 - | hypothetical protein TERM 595 937444 - 937426 - R 74 -6.2 -4.5028 | overlap 937423 ATTATAACAAAATAA TTTTTTAT TAC ATAAAAAA TAAAAATATATTTTA PTO0922 938186 - 937476 - | hypothetical protein TERM 596 939166 - 939152 - g 76 -5 -5.02074 | GCATCCTTGAAAAAA CACTCT CCG AGAATG ATATAATAGAGGTTG PTO0923 938419 - 939345 + | hypothetical protein TERM 597 940086 - 940103 + G 70 -9.1 -3.21704 | overlap 940082 940080 940078 TATTGATTGCATCGA TGCTGGC ATTT GCCGGCA TTGCATATATTATTA PTO0924 939335 - 940534 + | signal peptidase I PTO0925 941424 - 940501 - | hypothetical protein PTO0926 941573 - 941427 - | hypothetical protein PTO0927 941682 - 942596 + | hypothetical protein PTO0928 942934 - 942599 - | hypothetical protein PTO0929 944425 - 942944 - | NADH dehydrogenase subunit M PTO0930 946245 - 944422 - | NADH-quinone oxidoreductase chain L TERM 598 945156 - 945176 + g 80 -9.8 -3.56643 | opp_overlap 945159, overlap 945159 TTCTGAACAGGCCAC CAAGGGAT CTTAT ATCCCTTG TTTCAAGCGTGTACA TERM 599 945293 - 945272 - G 74 -8.8 -3.62756 | ATTGCAAATGAAACA CCGGAATA GAAAAA TATTCCGG ACATGCCAAGTGCCG TERM 600 946535 - 946500 - H 83 -11.4 -2.71325 | gap 1, opp_overlap 946500 946501 946502, overlap 946496 946497 946505 TCATGGATAAATTTA TATTATCGGTACCGATA TTA TATCGGTACCGATGA-A GTTTATCTTTGGCCG TERM 601 946500 - 946536 + H 100 -13.9 -4.33258 | opp_overlap 946500 946496 946497 946505, overlap 946501 946502 TCATGGATAAATTTA TATTATCGGTACCGATA TTA TATCGGTACCGATGAAG TTTATCTTTGGCCGT TERM 602 946501 - 946535 + H 100 -15.2 -3.19232 | opp_overlap 946500 946496 946497 946505, overlap 946500 946502 CATGGATAAATTTAT ATTATCGGTACCGATA TTA TATCGGTACCGATGAA GTTTATCTTTGGCCG TERM 603 946502 - 946534 + H 100 -18.7 -2.51057 | opp_overlap 946500 946496 946497 946505, overlap 946501 946500 ATGGATAAATTTATA TTATCGGTACCGATA TTA TATCGGTACCGATGA AGTTTATCTTTGGCC TERM 604 946531 - 946505 - H 100 -18.2 -2.69246 | opp_overlap 946502 946501 946500, overlap 946500 946496 946497 GATAAATTTATATTA TCGGTACCGATA TTA TATCGGTACCGA TGAAGTTTATCTTTG PTO0931 946531 - 947619 + | hypothetical protein ubiA 948428 - 947634 - | prenyltransferase PTO0933 949021 - 950646 + | amino acid permease PTO0934 950832 - 950650 - | hypothetical protein TERM 605 953256 - 953241 - g 71 -3.2 -5.1634 | ACAAATAGATAAAAA GCCC GAGCTTAA GGGC GATGAAATCATAGAA PTO0935 950923 - 953424 + | aconitate hydratase TERM 606 954451 - 954430 - g 71 -8.1 -3.53444 | opp_overlap 954421 GGAGGCGCTTGTAAA GCTTTTCAC AATG GTGAAAAAC CTTGGTGCAAGGTAC TERM 607 954463 - 954451 - g 83 -7.7 -4.63542 | CACAATGGTGAAAAA CCTTG GTG CAAGG TACATAACATTTCCG TERM 608 954571 - 954558 - g 70 -8.1 -3.2313 | opp_overlap 954557 954556 954569, overlap 954556 GTTTAAAGGAATACA TGGCG GAGG CGCCA GTGGTTGGTCTTGAA TERM 609 954700 - 954673 - g 76 -7 -4.32579 | ATATGTTATAACAAA TGCAACACCGAT AATG AACGATGCTGCA ATATTCCCATGCTAT PTO0936 953591 - 955198 + | Fe-S oxidoreductase PTO0937 956227 - 955193 - | transporter TERM 610 955923 - 955883 - G 85 -4.9 -5.65177 | opp_overlap 955887 955891, overlap 955884 955887 ATATGCATAAAAAAA GTAATAAAGGTATAGCATT ATA AATGCTATGTCTCTATTAA TTCCAATGTATGCAT TERM 611 955922 - 955884 - G 77 -8.4 -3.9748 | opp_overlap 955887 955891, overlap 955883 955887 TATGCATAAAAAAAG TAATAAAGGTATAGCATT ATA AATGCTATGTCTCTATTA ATTCCAATGTATGCA TERM 612 955891 - 955915 + g 70 -8.7 -3.18634 | opp_overlap 955887 955884 955883, overlap 955887 AAAAAAAGTAATAAA GGTATAGCATT ATA AATGCTATGTC TCTATTAATTCCAAT PTO0938 956859 - 956251 - | sulfite dehydrogenase TERM 613 956447 - 956437 - G 77 -8.2 -3.91032 | TAATGACGGTATAAA CGGC CTT GCCG GGAATCCCTGCTCAA TERM 614 956826 - 956836 + g 81 -4.6 -5.38047 | opp_overlap 956826 AATTCCTTGCATATA CCTG GCC CGGG TTTTTTATCTCAATC PTO0939 957289 - 956912 - | mannose-6-phosphate isomerase PTO0940 957685 - 957323 - | hypothetical protein PTO0941 957640 - 958809 + | aldo-keto reductase PTO0942 958878 - 959651 + | 5'-methylthioadenosine phosphorylase II PTO0943 959676 - 960893 + | mRNA 3'-end processing factor TERM 615 960902 - 960926 + F 77 -7.3 -4.20368 | opp_overlap 960902 AAATTAGTTTTATAA TATTCGTTAAA TTA TATAACGAATA TTTATATTAAAATAC PTO0944 960953 - 961966 + | Sua5 superfamily-related protein PTO0945 962000 - 962887 + | hypothetical protein TERM 616 962918 - 962896 - f 77 -9.4 -3.10732 | overlap 962888 962912 ATATTAAGCTTAATA GTATAAATTA TCA TAATTTATAC TAAATAACAAAATTA TERM 617 964302 - 964320 + G 79 -8.9 -3.96624 | opp_overlap 964305 TCCCACAGGGGTGAA TGATGCC TACCT GGCATCA TTTATAATAACAATA PTO0946 963001 - 964443 + | amino acid transporter PTO0947 964501 - 964938 + | hypothetical protein hemH 964959 - 965822 + | ferrochelatase TERM 618 966381 - 966369 - g 80 -6.3 -5.02231 | GAAAAACATCAAAAA CTGAT AAT ATCAG ACCTTGACCGTGAGA PTO0949 965868 - 966755 + | protein translation elongation factor PTO0950 968001 - 966745 - | phosphoribosylamine--glycine ligase PTO0951 968459 - 967998 - | thiosulfate sulfurtransferase PTO0952 968535 - 968840 + | hypothetical protein PTO0953 968880 - 969644 + | cysteine synthase TERM 619 969695 - 969673 - T 72 -9.2 -2.5586 | overlap 969672 969671 AAGACCTACAAAAGG GGAAAAACTG TAA CAGTATTTCC TGATGGCGGTGAAAA PTO0954 970452 - 969736 - | enoyl-CoA hydratase/isomerase family protein TERM 620 969874 - 969886 + g 76 -10.5 -2.75669 | overlap 969871 TAAAAGGTATTTTAT GGCGG ATA CCGCC TCATGTGATTTATTG TERM 621 970170 - 970180 + g 79 -8.2 -4.1552 | opp_overlap 970159 970170, overlap 970172 CAAAGCCACCACCAA GGGC GTA GCCC TTTATTGCAGCAATA TERM 622 970180 - 970170 - G 70 -8.2 -3.23984 | opp_overlap 970170 970172, overlap 970159 CAAAGCCACCACCAA GGGC GTA GCCC TTTATTGCAGCAATA PTO0955 971050 - 970481 - | hypothetical protein PTO0956 971525 - 971076 - | acetyltransferase PTO0957 972873 - 971545 - | malate oxidoreductase TERM 623 973634 - 973653 + G 78 -7.2 -4.41353 | gap 1 CAGGATAACGGCATG CGGCT-TTG GTG CAATAGCCG TTTTAATGTATATAA PTO0958 972972 - 973778 + | hypothetical protein PTO0959 973850 - 974854 + | pyruvate formate-lyase activating enzyme PTO0960 975819 - 975049 - | carbon-nitrogen hydrolase TERM 624 976346 - 976336 - g 72 -5.4 -4.57569 | opp_overlap 976336 CGAGCTTGTTAAAAA TGAC GGA GTCA TGGTTGCAGTTCATG PTO0961 975887 - 976771 + | hypothetical protein TERM 625 977152 - 977138 - g 70 -8.6 -3.06315 | opp_overlap 977135, overlap 977124 GCAATATTCTCAACA CTGGTA AAG TACCAG GGACTTGATGCACTC PTO0962 976952 - 977677 + | hypothetical protein PTO0963 978105 - 977686 - | MutT/NUCliX family hydrolase PTO0964 979646 - 978120 - | phosphoenolpyruvate carboxylase TERM 626 979182 - 979194 + g 74 -9.1 -3.48981 | CTCTATCTCATCCCT GGCTG CAA CAGCC TTCTCATAATATTTT pyrB 979837 - 980751 + | aspartate carbamoyltransferase catalytic subunit PTO0966 980753 - 981208 + | aspartate carbamoyltransferase regulatory subunit PTO0967 981827 - 981201 - | putative ATPase TERM 627 982483 - 982516 + G 80 -7.5 -4.41206 | gap 1, opp_overlap 982491 GCAGATGGCCGCTGT GCAATGTACCTAACAG AGG CTGTAAGGC-CATTGC TTTTATCCAATGATT PTO0968 981904 - 983154 + | glycosyltransferase PTO0969 983820 - 983155 - | hypothetical protein PTO0970 984214 - 983852 - | hypothetical protein PTO0971 984828 - 984211 - | translation initiation factor IF-2 subunit beta PTO0972 985062 - 985457 + | hypothetical protein TERM 628 985636 - 985622 - g 73 -7.2 -4.10179 | opp_overlap 985624 TAGAATCCATAGAAA CATCAA AAT TTGATG ATATGGAAATAACAA PTO0973 985438 - 985911 + | hypothetical protein PTO0974 986014 - 987216 + | transporter PTO0975 987242 - 987613 + | hypothetical protein PTO0976 989267 - 987594 - | multidrug resistance ABC transporter ATP-binding and permease protein TERM 629 987626 - 987643 + g 83 -6.9 -4.9725 | opp_overlap 987625, overlap 987629 TGATTTTTAATACAT GTTCCGG TGTG CCGGTAC TTTTTATCTCGCCAT TERM 630 987872 - 987891 + g 85 -9.2 -4.26076 | opp_overlap 987870, overlap 987857 987856 GGCCCTGCGAAAGCC CGTGGCCG TTCT CGCCCACG TTTTCATAGAGATCC TERM 631 988240 - 988262 + g 77 -6.4 -4.55287 | overlap 988242 GCCGGTTTTGATCCA TATGAAAATG AGA CATTTTCAAA TTTTATCTCACTGCC PTO0977 990837 - 989260 - | multidrug resistance ABC transporter ATP-binding and permease protein TERM 632 991419 - 991406 - g 72 -5.3 -4.55209 | GAGATATTAAACAAA GCATT AAGA AATGC CGTGCCAAATAAAAT PTO0978 991046 - 991609 + | hypothetical protein PTO0979 991641 - 992036 + | iron-dependent repressor TERM 633 992430 - 992414 - g 76 -3.7 -5.252 | GACTCTGATAAAAAA TCTGCAT TTA ATGAAGA TGATGAGAGATACAT PTO0980 992060 - 992497 + | phosphodiesterase TERM 634 992658 - 992637 - g 73 -8.1 -3.64487 | gap 1, opp_overlap 992636 992637 TGACAGGTGCAAGAA GCGGAA-TCT TTG AGAATTCCGC ATTAATTGTTACAAG PTO0981 992525 - 993598 + | Xaa-Pro dipeptidase PTO0982 993595 - 994554 + | DNA primase large subunit PTO0983 994800 - 994546 - | putative signal recognition particle PTO0984 995222 - 994797 - | 30S ribosomal protein S8e TERM 635 994922 - 994941 + g 73 -6.5 -4.21439 | CATAGTGTGGGTCTG CACTGTT TTCCTT AACAGTG TTTATCTTAACCTTC PTO0985 996763 - 995219 - | hypothetical protein TERM 636 996235 - 996221 - G 74 -8.6 -3.61178 | GCCAGGTATCCTAAA GGCATA AAA TATGCC AAGGATTATAAATAT nadE 996817 - 997566 + | NAD synthetase TERM 637 998622 - 998611 - g 73 -4.4 -4.96427 | TAATAATAAAACAAA GACA TTTA TGTC ACTTGTTGGGCCAAG PTO0987 997544 - 998821 + | Na(+)/H(+) antiporter TERM 638 998815 - 998803 - T 76 -6.3 -4.62872 | overlap 998805 ATTAATCGGCAAAAA TCTTC TTG GAAGA AAATAATTAATTTTA PTO0988 999406 - 998828 - | carboxylesterase PTO0989 1000086 - 999430 - | uracil-DNA glycosylase PTO0990 1000791 - 1000093 - | 3-oxoacyl-[acyl-carrier protein] reductase TERM 639 1000191 - 1000203 + g 70 -6.2 -4.24963 | overlap 1000199 TTGAAATATCCTCAA CCGG CGTTT CCGG TTTTCCGTACTTATG PTO0991 1001138 - 1000827 - | hypothetical protein PTO0992 1001215 - 1002096 + | cardiolipin synthase PTO0993 1002093 - 1002833 + | precorrin-3B C17-methyltransferase TERM 640 1003151 - 1003165 + G 73 -7.1 -4.08216 | opp_overlap 1003140 1003151 GAAAGCCCGGAATGA GCAGG GATGA CCTGC TTTTAAAGAACATAG PTO0994 1002874 - 1003848 + | malate dehydrogenase sdhA 1003875 - 1005557 + | succinate dehydrogenase flavoprotein subunit PTO0996 1005559 - 1006497 + | succinate dehydrogenase iron-sulfur subunit PTO0997 1006500 - 1007372 + | succinate dehydrogenase, subunit C PTO0998 1007369 - 1007698 + | succinate dehydrogenase, subunit D PTO0999 1008621 - 1007701 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 641 1007979 - 1008016 + g 75 -10.1 -2.91997 | gap 1, overlap 1007976 1007985 TGTCATTTTCAAGCT TGTAAACACGCTT-CCTG TAC CAGTCAAGTGTGTTTACA TCATTGTATGTAGGG PTO1000 1010506 - 1008611 - | 2-oxoglutarate synthase, alpha chain PTO1001 1010991 - 1010707 - | hypothetical protein PTO1002 1011882 - 1011028 - | succinyl-CoA synthetase subunit alpha TERM 642 1011139 - 1011155 + g 75 -6.5 -4.49314 | opp_overlap 1011139 1011138 ACCCTTCTCTATAAT TGCGCCA GCA TGGCCCA TTCTTTTTCCTGGTG sucC 1012989 - 1011883 - | succinyl-CoA synthetase subunit beta TERM 643 1012662 - 1012672 + g 75 -6.8 -4.40601 | TGGATGCTATTATTA CAGG AGC CCTG TTTGTTCTATCCATT PTO1004 1013101 - 1014258 + | nicotinate phosphoribosyltransferase PTO1005 1014427 - 1014642 + | hypothetical protein PTO1006 1014626 - 1016122 + | monocarboxylic acid/H+ symporter MctP TERM 644 1016224 - 1016199 - g 72 -7 -3.90897 | overlap 1016223 TAAAGATCACAATAA CCCTAGATAA TGATGG TTATCTAAGG GCTGTTGAACCCGAC PTO1007 1016180 - 1016392 + | hypothetical protein PTO1008 1016386 - 1016757 + | prefoldin subunit beta PTO1009 1016754 - 1017575 + | GTP cyclohydrolase PTO1010 1017991 - 1017572 - | glycerol-3-phosphate cytidylyltransferase TERM 645 1018384 - 1018400 + G 73 -9.5 -2.92935 | opp_overlap 1018382 1018384, overlap 1018381 GAGGTTGGAACAATA TTTGCAG CAA CTGCAAA TCCTTTAAGCGTTAT TERM 646 1018400 - 1018384 - g 77 -9.5 -3.39288 | opp_overlap 1018384 1018381, overlap 1018382 GAGGTTGGAACAATA TTTGCAG CAA CTGCAAA TCCTTTAAGCGTTAT PTO1011 1018066 - 1018545 + | hypothetical protein PTO1012 1019790 - 1018636 - | lactate 2-monooxygenase TERM 647 1020223 - 1020210 - g 100 -8.1 -5.38054 | TTTTATAAATAAAAA CGGGT TTAT ACCCG TGCCTGAATATAGCA PTO1013 1019872 - 1020672 + | prephenate dehydratase PTO1014 1020742 - 1021818 + | coenzyme PQQ synthesis protein E PTO1015 1022334 - 1021813 - | hypothetical protein PTO1016 1022597 - 1022331 - | hypothetical protein PTO1017 1023152 - 1022679 - | transposase PTO1018 1023260 - 1024858 + | quinoprotein dehydrogenase PTO1019 1025044 - 1026225 + | transporter PTO1020 1027301 - 1026219 - | DNA polymerase TERM 648 1026344 - 1026360 + gT 75 -2.3 -5.42131 | AATATCTTTTGTTTA TAATCGT TCC ATGGTTA TTTTTTATGTCATTG PTO1021 1029153 - 1027219 - | 3-hydroxybutyryl-CoA dehydrogenase/3-hydroxybutyryl-CoA dehydratase TERM 649 1028472 - 1028494 + gH 95 -11.3 -4.1399 | gap 1, opp_overlap 1028468 1028465 CAAACAACTCATATG GGCCCATGGG CATG CCC-TGGGCC TTTATATATGAATCG PTO1022 1029299 - 1030876 + | acyl-CoA synthetase PTO1023 1030882 - 1032069 + | acetyl-CoA acetyltransferase PTO1024 1032070 - 1033143 + | acyl-CoA dehydrogenase TERM 650 1033336 - 1033324 - g 81 -3.3 -5.61596 | overlap 1033325 AGCTTGATAAAAAAA CTGGC ATG GCCAT AATAGAGGAGGTTTC PTO1025 1033146 - 1034090 + | acyl-CoA dehydrogenase, short-chain specific PTO1026 1034121 - 1034984 + | 2-keto-3-deoxy gluconate aldolase PTO1027 1035328 - 1034981 - | hypothetical protein PTO1028 1036806 - 1035325 - | NADH dehydrogenase subunit M TERM 651 1036405 - 1036381 - G 71 -6.5 -4.13654 | opp_overlap 1036388, overlap 1036386 CCTGTAAATTATAAA GAAAACAGCAA GTA TTGCTATCTCC CAGAATATAAAGAAG TERM 652 1036400 - 1036386 - G 76 -5 -5.06089 | opp_overlap 1036388, overlap 1036381 AAATTATAAAGAAAA CAGCAA GTA TTGCTA TCTCCCAGAATATAA PTO1029 1038668 - 1036803 - | NADH-quinone oxidoreductase chain L TERM 653 1037737 - 1037752 + g 70 -2.6 -5.04175 | overlap 1037724 AGCTGGCTTATTGTT GAATAT GCAA GTATTC TTTTTATATCATTCA TERM 654 1039631 - 1039619 - g 74 -9.1 -3.53012 | opp_overlap 1039608 1039610 1039619 TGGTGGTTTTTTAAA GCCTG ATT CAGGC TATGTAAAATTAATG TERM 655 1039805 - 1039787 - g 86 -10.2 -4.25848 | overlap 1039788 AACTGCCGAGGAAAA GGCCAGGG AGG CCCTGGCA AGGGTGGGCCTTGAG TERM 656 1039804 - 1039788 - g 95 -13.7 -3.15027 | overlap 1039787 ACTGCCGAGGAAAAG GCCAGGG AGG CCCTGGC AAGGGTGGGCCTTGA PTO1030 1039404 - 1040210 + | sugar ABC transporter 1, ATP binding protein PTO1031 1040226 - 1041839 + | sugar ABC transporter 1, permease protein PTO1032 1041887 - 1042357 + | hypothetical protein PTO1033 1043355 - 1042354 - | sugar ABC transporter 1, ATP binding protein PTO1034 1044160 - 1043345 - | sugar ABC transporter 1, permease protein PTO1035 1044983 - 1044150 - | sugar ABC transporter 1, permease protein TERM 657 1044950 - 1044938 - G 79 -7.7 -4.27463 | CAAGAACATAAACAA GTGCT GGT AGCAC AAAGAGCAGGTACTT PTO1036 1045176 - 1046567 + | sugar ABC transporter 1, extracellular binding protein PTO1037 1047370 - 1046582 - | formate dehydrogenase subunit D PTO1038 1047768 - 1047367 - | hypothetical protein TERM 658 1047686 - 1047708 + g 75 -7.8 -4.05319 | opp_overlap 1047684 1047686 CCGGACTCATCAAGA GATCTTATTG TTT CCATAAGATC TTTAATATTATTTAT PTO1039 1050699 - 1047769 - | formate dehydrogenase alpha chain TERM 659 1047846 - 1047859 + g 81 -6.7 -4.85782 | overlap 1047849 TCTGTGGAACCGGAG TCCCA AATC TGGGA TTTGTTTTTGGCAGC TERM 660 1047849 - 1047863 + g 79 -7.2 -4.56597 | overlap 1047846 GTGGAACCGGAGTCC CAAATC TGG GATTTG TTTTTGGCAGCGGAG TERM 661 1048154 - 1048166 + g 74 -9.1 -3.62224 | opp_overlap 1048151 1048148 TCAAGGAATGTATCC GGGAC CTT GTCCC TTATTCCAGGCGTCT TERM 662 1050448 - 1050463 + g 70 -2.5 -5.12617 | TAAAAGCCTGTTTAT TGCCT CGATCT GGGCA TTTTTTACATCGTTG PTO1040 1050811 - 1051959 + | threonine synthase PTO1041 1052358 - 1051951 - | MarR family transcriptional regulator PTO1042 1054067 - 1052361 - | permease TERM 663 1053382 - 1053398 + g 70 -8.1 -3.2818 | overlap 1053380 CTTGAGTATGATTTG TATGGAA CTA TTCCATA TGTTATGCCTATTAA PTO1043 1054357 - 1054157 - | alcohol dehydrogenase PTO1044 1054862 - 1054392 - | beta-lactamase superfamily metal dependent hydrolase PTO1045 1054990 - 1056384 + | (S)-2-hydroxy-acid oxidase chain D TERM 664 1057256 - 1057268 + G 80 -7.7 -4.43859 | opp_overlap 1057256 GTCACAGCGCATGAA CCATG CCA CATGG TTTTATACAATTATG PTO1046 1056374 - 1057537 + | oxidoreductase TERM 665 1058198 - 1058184 - g 73 -4.2 -4.87133 | ACGGTGTAAATAAAA TGATCC TAA GGAACA TAGCAAAGAACATTG PTO1047 1057598 - 1058305 + | glutamine-hydrolyzing asparagine synthase TERM 666 1059240 - 1059221 - g 70 -3 -5.05782 | AGGCATCTCAAAAAA TTATAAAT CGAC ATTCATAA AAATTATAAAAAATG PTO1048 1058346 - 1059305 + | oxidoreductase TERM 667 1059333 - 1059314 - f 74 -5.2 -4.74012 | opp_overlap 1059325 1059327 ATTATAAAATTAAAA TATAATAA TTTT TTATTATA AATATTAATATTTAT TERM 668 1059521 - 1059508 - g 73 -2.5 -5.29782 | TACATGGATAAAAAA TTATT AATT AATAA GGATGAAATAGAGTA PTO1049 1059496 - 1059900 + | transposase TERM 669 1060191 - 1060161 - f 100 -11.8 -3.87346 | ATTATAATCATTAAA CCGGGACCGCCCCT ACC AAGAGAGATCCCGG CACCCTAGAGGTGAA TERM 670 1060364 - 1060351 - g 77 -8.1 -3.91144 | GTGACAGTGCAGAAA CCGGT GATA ACCGG AAACACAAAGACATT TERM 671 1061044 - 1061030 - g 74 -8.6 -3.47431 | overlap 1061024 1061027 ACAGTGAAACACCAA CAGATG CTG CATCTG AGAACCCATCAGGCG TERM 672 1061805 - 1061789 - g 79 -8 -4.24786 | opp_overlap 1061799, overlap 1061793 TGTATAACATAGAAA TGCAGG TTGCG CCTGCA ACAGGCGTTGCAAGC TERM 673 1061799 - 1061820 + G 74 -8.7 -3.69323 | opp_overlap 1061789 1061793 AGAAATGCAGGTTGC GCCTGCAAC AGGC GTTGCAAGC TTTACATACTGGTCA PTO1050 1060213 - 1064373 + | subtilase family protein PTO1051 1065221 - 1064376 - | fumarylacetoacetate hydrolase family protein TERM 674 1065064 - 1065096 + g 72 -2.1 -5.26918 | TTAATGCATGTATTA TAATGGTTCTTTAAA TAC TCTAAAGCATCATTG TTTTTTATCAAATCT PTO1052 1065562 - 1065218 - | transcriptional regulator PTO1053 1067022 - 1065946 - | nucleotide pyrophosphatase/phosphodiesterase I TERM 675 1066099 - 1066111 + g 71 -3.3 -5.02439 | TATCCTGTTATTTAT CCTGC CAA GCATG TTTTTATAATTCTCT TERM 676 1067386 - 1067374 - g 70 -2.6 -5.10064 | TTTAATAGAGAAAAA CGGC TCAAG GCCA TTAAAAAAGGTTTTT TERM 677 1068660 - 1068648 - g 76 -4.9 -5.07053 | AATTATCTGAAAAAA TAAAG AAA CTTTA CAACGGTCTTGAGAT PTO1054 1067096 - 1069000 + | zinc metalloprotease PTO1055 1069877 - 1069110 - | transcriptional regulatory protein TERM 678 1069355 - 1069367 + g 73 -2.7 -5.28481 | CTATTATTGGTATTA CGTTT ATT AAATG TTTTTTCATTAAATA PTO1056 1070134 - 1069907 - | molybdopterin (MPT) converting factor, subunit 1 moaA 1071070 - 1070138 - | molybdenum cofactor biosynthesis protein A PTO1058 1071170 - 1072513 + | sugar transporter PTO1059 1072887 - 1072474 - | molybdopterin (MPT) converting factor, subunit 2 TERM 679 1072935 - 1072955 + r 78 -4.1 -5.42265 | opp_overlap 1072940, overlap 1072938 TCCTTATTTATTTCA TAGTATAGA TGA TCTATAATA TTTTTTATGATTTCA PTO1060 1073392 - 1072916 - | molybdenum cofactor biosynthesis protein B TERM 680 1073284 - 1073298 + g 72 -5.7 -4.61633 | opp_overlap 1073284 TATAATCATTTAAAA GCATG TTCAT CATGC TTTTTCCAGATCTGT PTO1061 1073814 - 1073389 - | molybdenum cofactor biosynthesis protein C TERM 681 1073797 - 1073826 + g 76 -5.2 -5.06223 | TTTTATTATCTCCTT TGATGATATATC TATCAT GATATGTCATTA TTTTATTTGATTTAT TERM 682 1074302 - 1074313 + G 75 -4.4 -5.07107 | overlap 1074281 CCGGAGCTAAGGACC GGAT CAGG ATCC TTTTTTAAGAATTTC PTO1062 1073897 - 1075192 + | deoxyribodipyrimidine photolyase PTO1063 1075917 - 1075168 - | 6-pyruvoyltetrahydropterin 2'-reductase PTO1064 1076342 - 1075908 - | 6-pyruvoyltetrahydrobiopterin synthase TERM 683 1076420 - 1076436 + r 75 -9.5 -2.65264 | opp_overlap 1076432 1076435 TCGATCCCCCGACCT GCTGATT ACG AATCAGC TGCTCTGCCTGCTGA PTO1065 1077658 - 1076453 - | hypothetical protein PTO1066 1078373 - 1077552 - | endonuclease IV PTO1067 1079070 - 1078354 - | transcriptional regulator PTO1068 1080355 - 1079225 - | methyltransferase PTO1069 1080690 - 1080355 - | DNA-binding protein TERM 684 1081592 - 1081576 - g 71 -8.1 -3.42147 | opp_overlap 1081573 1081570 1081576 TGTAAGGAAGATGAA TTACAAC GGT GTTGTAA TACTCTTTGGAACAA PTO1070 1080782 - 1081861 + | glucose-1-dehydrogenase PTO1071 1081861 - 1082691 + | methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase PTO1072 1082729 - 1083058 + | hypothetical protein PTO1073 1084071 - 1083082 - | ketol-acid reductoisomerase TERM 685 1083393 - 1083410 + g 73 -7 -4.19307 | GCTTCATCTCATTTA TGGCCT CAAAAT AGGCCA TTTCTGGTTTGTATC PTO1074 1084327 - 1084052 - | hypothetical protein PTO1075 1086029 - 1084308 - | acetolactate synthase catalytic subunit PTO1076 1086928 - 1086197 - | DNA adenine methylase TERM 686 1086974 - 1086952 - H 81 -7.2 -4.70266 | opp_overlap 1086952 1086959, overlap 1086956 AATATCATTTAAAAA TAAATCTTCT TTC AAAAGATTTA TCTATTTTTTACATT PTO1077 1087000 - 1087560 + | protease I PTO1078 1087590 - 1088744 + | UDP sulfoquinovose synthase PTO1079 1089447 - 1088716 - | glucose-1-phosphate thymidylyltransferase PTO1080 1089557 - 1090123 + | multiple antibiotic resistance protein marC TERM 687 1090404 - 1090415 + G 79 -7.2 -4.67234 | TAAGTGACATGTACG GCCG CGTC CGGC TTTTTAACCTTGGCT TERM 688 1090810 - 1090820 + G 73 -6.8 -4.35682 | AGGGAATATAACGTT TGCC GCA GGCA TTGTTTTAATTCTCC PTO1081 1090181 - 1091869 + | permease PTO1082 1092376 - 1091840 - | hypothetical protein PTO1083 1092383 - 1093306 + | aminotransferase PTO1084 1094625 - 1093309 - | sugar transporter PTO1085 1096432 - 1094711 - | adenine deaminase TERM 689 1095998 - 1096013 + g 74 -4.8 -5.01732 | TCTTCCCATAAATCG CATAAA TCTT TTTATG TTTTTTAAGCCCATT PTO1086 1097748 - 1096432 - | hypothetical protein PTO1087 1097935 - 1098297 + | hypothetical protein PTO1088 1098388 - 1099554 + | sugar binding protein PTO1089 1099659 - 1100018 + | hypothetical protein PTO1090 1100118 - 1100837 + | hypothetical protein PTO1091 1101726 - 1100854 - | methionine aminopeptidase PTO1092 1102442 - 1101759 - | serine/threonine protein phosphatase TERM 690 1102656 - 1102646 - gH 74 -5.4 -4.78764 | overlap 1102648 GAAATTTATTAAAAA CATC CTT GATG AGGACAATTTTTATA PTO1093 1102413 - 1103564 + | hypothetical protein PTO1094 1103604 - 1104566 + | N-acetylglucosamine kinase TERM 691 1104611 - 1104587 - f 81 -10.3 -3.17146 | opp_overlap 1104583 1104591, overlap 1104585 1104583 TTTTTTTATAATAGA TATATCTAAAT ACA ATTTAGATATA TACATCTATGGTAAA PTO1095 1104619 - 1105050 + | transcriptional regulator PTO1096 1105028 - 1106011 + | daunorubicin resistance ATP-binding protein DrrA PTO1097 1106008 - 1106817 + | daunorubicin resistance ATP-binding protein DrrB TERM 692 1107111 - 1107101 - g 71 -6.8 -4.16016 | GGAGTTCTCAAGAAA CCTG CCA CAGG AATGGGATGATATAA PTO1098 1106853 - 1107587 + | putative ICC-like phosphoesterase PTO1099 1107616 - 1108542 + | glycosylase TERM 693 1109068 - 1109052 - g 79 -10.1 -3.42702 | overlap 1109050 GACGATTTAATAATA GTGCCAG ATG CCGGCAC ACCTGATGGAAGAAC PTO1100 1108566 - 1109702 + | succinyl-diaminopimelate desuccinylase tdk 1110301 - 1109693 - | thymidylate kinase TERM 694 1110060 - 1110074 + g 82 -5 -5.42131 | opp_overlap 1110060 CTATCTGAGATTACA CCATTT ATT AGATGG TTTTTTATCTCCTTC TERM 695 1110869 - 1110850 - g 78 -3.5 -5.38951 | overlap 1110852 AATTGATATAAAAAA CGTGGCA TCGTTC TGCCATG AAAATGATGTTTTAT PTO1102 1110362 - 1111519 + | cystathionine gamma-lyase PTO1103 1111855 - 1111514 - | peptidyl-tRNA hydrolase PTO1104 1112412 - 1111858 - | hypothetical protein PTO1105 1112983 - 1112405 - | transcriptional regulatory protein PTO1106 1113066 - 1113920 + | regulatory protein PTO1107 1113910 - 1114227 + | hypothetical protein PTO1108 1114257 - 1114865 + | phosphoglycolate phosphatase PTO1109 1114928 - 1116067 + | aspartate aminotransferase PTO1110 1116649 - 1116062 - | ParR family transcriptional regulator TERM 696 1116789 - 1116767 - g 73 -7 -4.18018 | opp_overlap 1116768, overlap 1116768 GTTGTTGATTTAAAA GCCTCAGTTC AGG GAACTGAGAT ATTAAAGGGCGTAAA TERM 697 1116788 - 1116768 - g 78 -10.5 -3.10597 | opp_overlap 1116768, overlap 1116767 TTGTTGATTTAAAAG CCTCAGTTC AGG GAACTGAGA TATTAAAGGGCGTAA PTO1111 1116704 - 1117480 + | ABC transporter ATP-binding protein TERM 698 1117595 - 1117579 - g 79 -6.6 -4.77867 | AGAGATAATATAAAA CCTGTT TATTC AACAGG CCGCGGTCTTACCAG TERM 699 1117811 - 1117787 - g 70 -8.5 -3.26998 | overlap 1117790 ATGAAATCAAGGCAA GGAGCTGGGAC GAG GTCCCAGATCA GATAAAGCAGACCTT TERM 700 1118640 - 1118650 + G 73 -6.8 -4.2558 | AAAGAGCTTTGTCCA GTGC GAT GCAC TTTTAATAAACGATG PTO1112 1117480 - 1118922 + | ABC transporter ATP-binding protein PTO1113 1118919 - 1120121 + | ABC transporter ATP-binding protein PTO1114 1121537 - 1120113 - | glycyl-tRNA synthetase TERM 701 1120807 - 1120819 + g 72 -6.3 -4.44211 | opp_overlap 1120806 1120807, overlap 1120804 ATTCTATTTTCAAAG GCATT CTT AATGC TTGTTTTATATTCAA PTO1115 1122379 - 1121534 - | CBS domain-containing protein TERM 702 1122067 - 1122077 + g 73 -4 -5.10968 | GTGTCAGTATTCCTG TAAC CTC GTTA TTTTTGTCTATTACT PTO1116 1122464 - 1123357 + | glycerate dehydrogenase PTO1117 1123638 - 1124000 + | hypothetical protein PTO1118 1124664 - 1124002 - | metal-dependent hydrolase PTO1119 1124753 - 1125616 + | carbon monoxide dehydrogenase, medium chain PTO1120 1125609 - 1126064 + | carbon monoxide dehydrogenase alpha subunit TERM 703 1127028 - 1127013 - g 78 -3.3 -5.39721 | CTATGATATAAAAAA TGCAT ATATAA ATGCA ATATCAGTTTTCACA PTO1121 1126054 - 1128090 + | carbon monoxide dehydrogenase beta subunit PTO1122 1128958 - 1128083 - | Zn-dependent hydrolase TERM 704 1129499 - 1129509 + G 71 -4 -4.87626 | opp_overlap 1129488, overlap 1129488 AAGATGGTTATAGAC CATA CAT TATG TTTTTGATATTCAAC PTO1123 1129006 - 1129686 + | sugar fermentation stimulation protein A TERM 705 1130255 - 1130237 - g 72 -2.2 -5.24796 | TTCATATAATAAAAA CCGGTGGC CAT ACGGCCGG ACACAGAATAGTCTG PTO1124 1129750 - 1130514 + | metal dependent hydrolase TERM 706 1130776 - 1130763 - g 75 -3.1 -5.22943 | ATTAAATCTAAAAAA TGAAC TTGA GCTCA GGGTACATTCCTTTG PTO1125 1130611 - 1131009 + | hypothetical protein PTO1126 1132269 - 1131010 - | sugar transporter TERM 707 1132025 - 1132015 - G 72 -5.4 -4.59511 | AAGACCTGTGAAAAA CGAT CCT ATCG AATATATTAGAACGG PTO1127 1132398 - 1132889 + | hypothetical protein TERM 708 1133481 - 1133467 - g 71 -6.4 -4.12456 | ATACTACGGTGAAAA TCCAGA GCC CCTGGA AAAGTTAAAAAACGT PTO1128 1132943 - 1133719 + | carboxymethylenebutenolidase PTO1129 1134216 - 1133710 - | hypothetical protein TERM 709 1134109 - 1134088 - G 71 -6.7 -4.06786 | opp_overlap 1134088 ACCGAAGATGATAAA TCTTGCAAT CGGT ATTACAAGA TTGTAAAAATAATGT PTO1130 1134313 - 1134612 + | hypothetical protein PTO1131 1135424 - 1134609 - | Sec-independent protein translocase protein TatC PTO1132 1135708 - 1135427 - | Sec-independent protein translocase protein TatA TERM 710 1136256 - 1136242 - g 73 -6.4 -4.29326 | TGGAAATCCAATAAA GGCATC TGA GATACC TGCTGCCGAGCCGTC PTO1133 1136048 - 1136905 + | Rieske iron-sulfur protein TERM 711 1136893 - 1136881 - f 87 -10.5 -3.63895 | opp_overlap 1136882 1136883, overlap 1136862 TGTAAGCAGCTCAAA CGGCC CGT GGCCG GGATCATTTTAGGGT PTO1134 1136915 - 1138108 + | cytochrome b PTO1135 1138105 - 1138296 + | hypothetical protein PTO1136 1138298 - 1138648 + | hypothetical protein TERM 712 1138782 - 1138797 + G 70 -9 -3.08786 | overlap 1138781 CAGCATAGGACCGCA CCAGCT TGGC AGCTGG ATTTCATTCTTCTTT PTO1137 1138645 - 1138866 + | hypothetical protein TERM 713 1139096 - 1139082 - g 70 -8.6 -3.17723 | TGACCGGCAATGGAA CTGCAT ATC ATGCAG GATATCTTGGCATGC PTO1138 1138925 - 1139959 + | isomerizing glucosamine--fructose-6-phosphate aminotransferase PTO1139 1140015 - 1140308 + | hypothetical protein PTO1140 1140371 - 1141570 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase PTO1141 1142255 - 1141560 - | esterase PTO1142 1142965 - 1142252 - | hypothetical protein PTO1143 1144198 - 1142966 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase PTO1144 1145733 - 1144528 - | putative transporter PTO1145 1146965 - 1145733 - | putative multidrug resistance protein PTO1146 1147647 - 1146994 - | alkaline phosphatase like protein TERM 714 1147264 - 1147251 - G 71 -6.7 -4.10453 | opp_overlap 1147250 1147251, overlap 1147240 TAAATGTTCTGAAAA CAGGT AAAA ACCTG GTTGTGAAAACTGAC TERM 715 1148353 - 1148366 + G 70 -8.1 -3.28745 | GGCATTATCCCTTGG CGGTG CAAA CACCG TTGAATTGTTCAGGC PTO1147 1147757 - 1148599 + | 2-hydroxy-3-oxopropionate reductase PTO1148 1148637 - 1149254 + | iron-dependent repressor PTO1149 1150111 - 1149251 - | pirin TERM 716 1149733 - 1149773 + g 79 -4 -5.50723 | TTTTGTTCCCTGGAA GGTTTACCCAGAGCTG GAAACCGGA CATCTCTGTGTATACC TTTTTATTTTCCTCA PTO1150 1150205 - 1150513 + | MarR family transcriptional regulator PTO1151 1151874 - 1150870 - | putative alcohol dehydrogenase TERM 717 1151193 - 1151209 + g 72 -2.1 -5.19916 | opp_overlap 1151193, overlap 1151195 1151196 1151203 1151205 CGATTTCAAGTACAA TGTCGGC ACC GCCGTAA TTTTTTACGTCTTTT TERM 718 1151196 - 1151206 + g 71 -8.2 -3.40444 | opp_overlap 1151193, overlap 1151195 1151193 1151203 1151205 TTTCAAGTACAATGT CGGC ACC GCCG TAATTTTTTACGTCT PTO1152 1152964 - 1151918 - | NADPH-dependent oxidoreductase PTO1153 1153169 - 1154566 + | transporter PTO1154 1155272 - 1154553 - | carbon-nitrogen hydrolase TERM 719 1154931 - 1154943 + g 74 -4.9 -4.88795 | AATTTTTCCATGCAT TGTTT CAA AAACA TTTATTTTGTTACCT PTO1155 1156981 - 1155947 - | DNA polymerase IV TERM 720 1157043 - 1157073 + H 82 -7 -4.78981 | opp_overlap 1157050, overlap 1157044 1157046 1157050 TACTGGAAATTCCAT ATTTAAATATCCTG ATG CAGGATATTTATAG TTTATTTTAATTGGT TERM 721 1157044 - 1157072 + H 86 -10.5 -3.45762 | opp_overlap 1157050, overlap 1157043 1157046 1157050 ACTGGAAATTCCATA TTTAAATATCCTG ATG CAGGATATTTATA GTTTATTTTAATTGG TERM 722 1157046 - 1157070 + H 100 -13.1 -3.28108 | opp_overlap 1157050, overlap 1157044 1157043 1157050 TGGAAATTCCATATT TAAATATCCTG ATG CAGGATATTTA TAGTTTATTTTAATT TERM 723 1157050 - 1157066 + H 89 -9.5 -4.24747 | opp_overlap 1157050, overlap 1157046 1157044 1157043 AATTCCATATTTAAA TATCCTG ATG CAGGATA TTTATAGTTTATTTT TERM 724 1157066 - 1157050 - H 83 -9.5 -3.71645 | opp_overlap 1157050 1157046 1157044 1157043 AATTCCATATTTAAA TATCCTG ATG CAGGATA TTTATAGTTTATTTT TERM 725 1157681 - 1157699 + G 76 -10.3 -2.57132 | opp_overlap 1157681, overlap 1157680 AGGTACAATATTTAA GGCACCA ATAGG TGGTGCC GTTCTCGGAGCCGAG TERM 726 1157699 - 1157681 - g 79 -10.3 -3.21993 | opp_overlap 1157681 1157680 AGGTACAATATTTAA GGCACCA ATAGG TGGTGCC GTTCTCGGAGCCGAG TERM 727 1157803 - 1157817 + G 75 -4.2 -5.01845 | overlap 1157805 1157814 TATTTGCCTCAATTG TCGGCT TTG AGCCAA TTTTTGGTTATTATC TERM 728 1158208 - 1158225 + G 79 -9.1 -3.88097 | overlap 1158188 CTGGCATATTCATAG GCGCATC ACTT GGTGCGC TTCTTGGTTATCTAG PTO1156 1157127 - 1158899 + | chloride channel protein TERM 729 1159036 - 1159050 + G 79 -8.6 -3.90922 | ACAATGCATTCAAGC TTGAGC AGA GCTCAA TTGTTTCCCAGCCAT PTO1157 1158921 - 1159601 + | hypothetical protein PTO1158 1159873 - 1159712 - | hypothetical protein PTO1159 1160942 - 1159953 - | oxidoreductase TERM 730 1160547 - 1160557 + g 74 -5.4 -4.8269 | TAAATCAATGTAATC GGTT TTT AACC TTTTTAATGATTCTC PTO1160 1161355 - 1160972 - | hypothetical protein PTO1161 1163188 - 1161398 - | ATPase TERM 731 1163217 - 1163233 + r 72 -4.5 -5.08483 | opp_overlap 1163220, overlap 1163212 ATATTATTATTTAAA TAATTTC AAA GAAATTG TTTTATTTAATTTTA PTO1162 1164457 - 1163246 - | transporter TERM 732 1163469 - 1163438 - G 81 -7.2 -4.76041 | overlap 1163452 1163455 GATATTTATTAAAAA CGATGGTGGCAGAA CCAT TCCAGCCATCACCG CCGGAAGGCTTTCAA PTO1163 1164618 - 1164794 + | zinc finger protein ef1B 1164760 - 1165065 + | elongation factor 1-beta PTO1165 1165062 - 1166129 + | glycosyltransferase PTO1166 1166148 - 1167479 + | phosphoglucomutase/phosphomannomutase PTO1167 1168079 - 1167471 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PTO1168 1169275 - 1168088 - | N-acetylglucosaminyltransferase PTO1169 1169431 - 1170627 + | transporter TERM 733 1170948 - 1170936 - f 75 -7.7 -4.15061 | opp_overlap 1170934 1170936 CAATTTATATACAAA GCATG GAT CATGC TATTAATACAATATT TERM 734 1171339 - 1171371 + G 78 -10.8 -2.79023 | opp_overlap 1171354 1171365, overlap 1171336 AACACTTCTTCCTTG GTAATGGTATATAC AGAAG GTATATACCATCAC TGGTTGATGAAATTA TERM 735 1171803 - 1171784 - g 72 -5 -4.84017 | AATCCTGGATAAAAA TGTCTTTG AAAT CAAGGACA TAAAAAAGGATTCAA TERM 736 1172374 - 1172342 - g 70 -6.9 -3.79687 | AGGCGGCATAAAATA CAGGGACCTTACCGG TTC CGGGGAAGATACCTG GCGCTTTTTCTCCGT PTO1170 1171155 - 1172444 + | glycine dehydrogenase subunit 1 PTO1171 1172446 - 1173843 + | glycine dehydrogenase subunit 2 PTO1172 1174102 - 1174977 + | hypothetical protein PTO1173 1175288 - 1174974 - | hypothetical protein PTO1174 1175440 - 1175775 + | putative sulredoxin TERM 737 1176683 - 1176651 - g 76 -4.8 -5.10077 | AAACATTTCAAAAAA CAGCAGGTTTATGT GGCTG ACAAACACCAGCTG GATGATGTGGAACTT PTO1175 1175821 - 1177695 + | acetoacetyl-CoA synthetase TERM 738 1177981 - 1177960 - g 71 -9.5 -2.5742 | opp_overlap 1177959 1177957, overlap 1177959 1177957 TGCAAACATTAACAT GGTAACCCA GGGG TGGATTACC GGTGTTGTGGATAAA TERM 739 1178183 - 1178173 - g 71 -6.8 -4.04149 | opp_overlap 1178172 GAACGAGATGATAAA GCTG CTG CAGC GTGTTCAGGAAAATG PTO1176 1177778 - 1178218 + | MarR family transcriptional regulator PTO1177 1179179 - 1178208 - | putative NADH dehydrogenase TERM 740 1179021 - 1179008 - G 71 -6.7 -4.15508 | opp_overlap 1179007 1179001 1179008 AATCAATTTTTAAAA GCATG TCAA CATGC CTTTCAATTGATGTT PTO1178 1179280 - 1181316 + | ABC transporter extracellular solute-binding protein PTO1179 1181418 - 1181735 + | rhodanese-related sulfurtransferase TERM 741 1181739 - 1181750 + T 75 -3 -5.58179 | opp_overlap 1181739 TATGATGAATAAAAT TAAG ATTT CTTA TTTTTTATTATAATG PTO1180 1182859 - 1181738 - | putative transport protein TERM 742 1182922 - 1182908 - H 71 -5.8 -4.5187 | opp_overlap 1182907 TTCAAAAAAATCAAA TTAAAG AAC CTTTAA ATAATATTTTAAATG PTO1181 1182935 - 1183273 + | hypothetical protein PTO1182 1183303 - 1183572 + | hypothetical protein TERM 743 1184574 - 1184564 - g 71 -4 -4.95484 | GACGATGAAATAAAA TCAA AGA TTGA TGAGGTAAATTCCAT PTO1183 1183838 - 1184827 + | hypothetical protein PTO1184 1184916 - 1185431 + | hypothetical protein PTO1185 1186858 - 1185422 - | gamma-glutamyltranspeptidase TERM 744 1186758 - 1186738 - G 100 -14.1 -3.61894 | overlap 1186741 AATGGGGTTGAACAA CAACCAGTG CAG CACTGGTTG CAATTGCGGCATCGT TERM 745 1186755 - 1186741 - G 83 -10 -3.9461 | overlap 1186738 GGGGTTGAACAACAA CCAGTG CAG CACTGG TTGCAATTGCGGCAT PTO1186 1187015 - 1188850 + | molybdenum cofactor biosynthesis protein A PTO1187 1189305 - 1188862 - | putative cytoplasmic protein PTO1188 1190553 - 1189306 - | acetyl-CoA acetyltransferase PTO1189 1191668 - 1190550 - | isovaleryl-CoA dehydrogenase TERM 746 1190817 - 1190829 + g 75 -7.7 -4.0827 | overlap 1190828 GTATGCAAAGAGCCT GCTTG TTT CAAGC TTTGTATACATGTAT PTO1190 1191744 - 1192145 + | hypothetical protein TERM 747 1192179 - 1192165 - T 81 -10 -3.16039 | opp_overlap 1192163 AATTATTTTTATTAA TGGCCT TCC AGGCCA CGGGTTCTTTTTATC leuS 1194822 - 1192147 - | leucyl-tRNA synthetase PTO1192 1195376 - 1194828 - | pyruvoyl-dependent arginine decarboxylase PTO1193 1196357 - 1195410 - | putative dehydrogenase TERM 748 1197621 - 1197591 - g 80 -7.6 -4.44667 | overlap 1197594 1197615 TGTTCTAATAAGAAA GAACTCGCTTGCAA CCG TTGCAAACCAGGTC ATGCTGGAACTTTAT TERM 749 1197618 - 1197594 - g 79 -7.9 -4.33582 | overlap 1197591 1197615 TCTAATAAGAAAGAA CTCGCTTGCAA CCG TTGCAAACCAG GTCATGCTGGAACTT TERM 750 1197862 - 1197843 - g 79 -8 -4.31085 | GATACCAAGTGAAAA GATCTATA GGGT TATAGATC AAACAAATAAAAAAT PTO1194 1196410 - 1199115 + | ATP-dependent RNA helicase TERM 751 1199342 - 1199327 - g 74 -9 -3.43217 | TAGCAACATCCATAA GGTCCA CACT TGGACC AAGGGGCATGGACAA PTO1195 1199215 - 1200840 + | thermosome subunit PTO1196 1200830 - 1201840 + | tRNA-modifying enzyme PTO1197 1202020 - 1201841 - | hypothetical protein PTO1198 1203191 - 1202031 - | arsenite-transporting ATPase TERM 752 1203004 - 1203019 + g 79 -6.2 -4.8667 | TTTATCTCCTGTGCA TAGAGA TTTT TCTCTA TTTTTGTCGGCTCTG TERM 753 1203139 - 1203119 - G 85 -11.9 -2.69151 | opp_overlap 1203126, overlap 1203116 TGTTTTTAGATATCA TTGCAGCAG TTG CCGCTGCAA CACTTGTTTTACCAA PTO1199 1204178 - 1203192 - | farnesyl pyrophosphate synthetase/ geranyltransferase/farnesyltransferase/hexaprenyl diphosphate synthase TERM 754 1203268 - 1203251 - G 86 -9.9 -4.2679 | opp_overlap 1203254 CAAGCTCCATTAAAA GATCCAG ATCC CTGGATC TGCCTATTCCTGATA PTO1200 1204534 - 1204262 - | chromatin protein PTO1201 1204992 - 1204603 - | AsnC family transcriptional regulator TERM 755 1204841 - 1204809 - G 76 -7.1 -4.2679 | opp_overlap 1204815 1204818 CAACCTTTATTAAAA CAATTGCATCAACAC TTG ATGTTGTTTCAATTG TAAACTTTGTTATTA TERM 756 1204815 - 1204829 + g 72 -7.2 -4.03167 | opp_overlap 1204809, overlap 1204818 TTATTAAAACAATTG CATCAA CAC TTGATG TTGTTTCAATTGTAA PTO1202 1205290 - 1205042 - | hypothetical protein PTO1203 1205366 - 1205959 + | beta-lactamase, type II PTO1204 1205989 - 1206216 + | phosphoribosylformylglycinamidine synthase TERM 757 1206322 - 1206308 - g 76 -3.6 -5.30155 | CTATTAATTAAAAAA TACTTC ACA GAAATA AAAAGAAATCCCAGT TERM 758 1206647 - 1206663 + G 100 -8 -5.36441 | CTTTACTTTGGCGAC CCGGAT AACAA ATCCGG TTTTTTATCTGAGAG PTO1205 1206218 - 1208443 + | phosphoribosylformylglycinamidine synthase II PTO1206 1208463 - 1208699 + | hypothetical protein PTO1207 1208730 - 1209224 + | hypothetical protein PTO1208 1209696 - 1209226 - | hypothetical protein PTO1209 1209784 - 1211085 + | UDP-forming alpha,alpha-trehalose-phosphate synthase PTO1210 1211049 - 1211786 + | trehalose-phosphatase PTO1211 1212223 - 1211783 - | transcription factor TERM 759 1212249 - 1212229 - H 75 -8.5 -3.41602 | opp_overlap 1212229 1212227 1212226, overlap 1212234 CGCATTCCATGATAA TATAATGTT TAT AACATTATA TATGTTTTTCTATTG TERM 760 1212229 - 1212249 + H 79 -8.5 -3.66691 | opp_overlap 1212229 1212234, overlap 1212227 1212226 CGCATTCCATGATAA TATAATGTT TAT AACATTATA TATGTTTTTCTATTG PTO1212 1212298 - 1212936 + | fibrillarin PTO1213 1213116 - 1213388 + | hypothetical protein aspC 1214833 - 1213562 - | aspartyl-tRNA synthetase TERM 761 1216142 - 1216123 - g 81 -4.4 -5.48623 | gap 1, opp_overlap 1216127, overlap 1216127 AAACAGAAATAAAAA GA-AACGAT GAG ATCGTTGTC CTGGGACGCAGCGGC TERM 762 1216137 - 1216127 - g 78 -5.4 -5.1502 | opp_overlap 1216127, overlap 1216123 AGAAATAAAAAGAAA CGAT GAG ATCG TTGTCCTGGGACGCA PTO1215 1214928 - 1216184 + | putative serine protease PTO1216 1216199 - 1217152 + | glucokinase TERM 763 1218905 - 1218891 - g 71 -3.6 -4.91084 | overlap 1218893 GATTTAATAAGAAAA TACATA TCA TATGCA AAAAACAGGATTTTT PTO1217 1217310 - 1219394 + | cell division control protein MCM TERM 764 1219526 - 1219539 + G 81 -5.3 -5.24531 | opp_overlap 1219526 TATGGCGAGATGAAG GTTTC AGAT GAAAC TTTTTTATCAACAAT PTO1218 1219391 - 1219690 + | hypothetical protein rps13p 1219752 - 1220228 + | 30S ribosomal protein S13P rps4p 1220238 - 1220789 + | 30S ribosomal protein S4 rps11p 1220782 - 1221165 + | 30S ribosomal protein S11P PTO1222 1221165 - 1221980 + | DNA-directed RNA polymerase subunit D TERM 765 1222003 - 1221991 - T 71 -4.8 -4.91084 | AATAAAATTTAAAAA CCTC TATAT GAGG TTACAGCAACGTATA PTO1223 1222775 - 1221984 - | hypothetical protein PTO1224 1223464 - 1222856 - | alpha/beta fold family hydrolase TERM 766 1223045 - 1223029 - G 72 -5.1 -4.73108 | CCCATAAAATTAAAA CAGGTTT CTC AATCCTG CTGAGCTCGTTTAAT PTO1225 1223547 - 1225382 + | hypothetical protein PTO1226 1226296 - 1225379 - | bifunctional phosphoglucose/phosphomannose isomerase TERM 767 1225413 - 1225437 + g 74 -8.7 -3.51032 | opp_overlap 1225417, overlap 1225411 1225421 AATTCCTCTATTGTG GAAACATCCAT TGG ATCGATGTTTC TTATCATTGCAAGCT PTO1227 1226412 - 1227542 + | sulfide dehydrogenase (flavocytochrome C) PTO1228 1227552 - 1228013 + | hypothetical protein PTO1229 1229258 - 1228005 - | hypothetical protein TERM 768 1229132 - 1229143 + g 73 -3.6 -5.0809 | ATAAAAAGTATAAAT CTGC AGCC GCGG TTTTTATCCTTTCTT PTO1230 1230428 - 1229262 - | MoxR-like ATPase TERM 769 1230394 - 1230378 - G 71 -6.7 -4.15044 | opp_overlap 1230378 CTCCCTGCCAACAAA TGTATTT AAT AAATACA TCTTGACACGGTTTA PTO1231 1231626 - 1230508 - | mechanosensitive ion channel TERM 770 1231370 - 1231391 + g 76 -3.7 -5.21236 | overlap 1231373 ACGATAAGTGCTATG CCATAAAGG CTTG CCTTTGTTG TTTTTATTCTCAATT PTO1232 1232950 - 1231616 - | seryl-tRNA synthetase PTO1233 1233720 - 1233007 - | diphthine synthase eno 1234970 - 1233768 - | phosphopyruvate hydratase TERM 771 1235062 - 1235049 - H 70 -2.4 -5.57054 | AATAATTCAAAAAAA CATG CATTAT CATG TGACAAAATTATATG TERM 772 1235789 - 1235776 - g 70 -8.1 -3.33696 | TCTTCTTGCAATGAA CCCTG TTGC CAGGG TTGAAAGAAGCATGG PTO1235 1235276 - 1237225 + | ATP-dependent protease Lon PTO1236 1237215 - 1237628 + | hypothetical protein PTO1237 1238507 - 1237611 - | 6-phosphofructokinase TERM 773 1238053 - 1238069 + g 73 -3.7 -5.04356 | ATCTCCTGGCCAGGA TCAAAGA CTA TCCTTGA TTTTTCATTGTTTGC TERM 774 1238595 - 1238569 - H 74 -2.5 -5.67967 | opp_overlap 1238570, overlap 1238570 ATCATCATAAAAAAA CTTAAATAAAA AATGA TTTTATTTAAT TTAATGAACAGCTTT PTO1238 1238581 - 1240311 + | putative glycogen debranching enzyme PTO1239 1240308 - 1241438 + | glycosyltransferase PTO1240 1241423 - 1242547 + | alpha-amylase PTO1241 1245056 - 1242735 - | ribonucleotide-diphosphate reductase subunit alpha TERM 775 1243764 - 1243788 + g 80 -2.8 -5.5454 | overlap 1243747 1243767 ATTCGTTGATTCTAT GTATCCTATG TTTTT CACAGGATTC TTTTTGTTTATTTCA TERM 776 1244205 - 1244222 + g 73 -7 -4.17296 | opp_overlap 1244205 TCTTGAGAATGAGAA TCCGGT TCCACC ACCGGA TTTGTGTATCTCGGC TERM 777 1244909 - 1244923 + g 70 -8.6 -3.05775 | overlap 1244908 TTAACAGCTCATCTA TAACGG CGT CCGTTA GTTTTGAGGCATCCT PTO1242 1245468 - 1246373 + | glutamate formiminotransferase TERM 778 1246683 - 1246669 - g 84 -4.2 -5.64304 | overlap 1246671 GAACATAATAAAAAA CCTGAG GGT CTCATG GCATTTAATTTACAT PTO1243 1246376 - 1246942 + | formiminotransferase-cyclodeaminase PTO1244 1246973 - 1248580 + | formate--tetrahydrofolate ligase TERM 779 1248649 - 1248637 - g 70 -7.7 -3.69621 | ATTGATAATCGCAAA TCCTG GCA CAGGA AAGACAATGACAATA TERM 780 1248917 - 1248936 + G 73 -6.4 -4.28656 | opp_overlap 1248916 1248928 TATCTTATACTTAAG GCGCTTGA AGAG TCAAACGC TTTTAACTATTCCAT TERM 781 1249193 - 1249177 - g 89 -6.6 -5.50723 | opp_overlap 1249176 1249177 TGAGGAAAACAAAAA CGGTAT TGATT ATACCG ATATTTTAAACATTT PTO1245 1248611 - 1251169 + | ATP-dependent DNA helicase TERM 782 1251731 - 1251759 + G 74 -8.9 -3.55603 | overlap 1251728 GGTGTTAGATGGTAC CTTGCAGAGATCA TAA TGTTCTTTGCAGG TGTTATTTCAGGATT PTO1246 1251224 - 1252225 + | hypothetical protein PTO1247 1252222 - 1252623 + | hypothetical protein PTO1248 1253106 - 1252636 - | putative peroxiredoxin TERM 783 1253066 - 1253086 + g 84 -7.5 -4.74084 | TTTAGATTCATATCT GGTGCCTCA AAA TCAGGCGCC TTTTCATTTTCGTTT TERM 784 1254221 - 1254231 + G 73 -8.2 -3.6796 | opp_overlap 1254221 GCATGGCGAGGTAAA CGGC AGG GCCG TTCTTAAGATGTATT TERM 785 1254231 - 1254221 - g 73 -8.2 -3.65351 | opp_overlap 1254221 GCATGGCGAGGTAAA CGGC AGG GCCG TTCTTAAGATGTATT PTO1249 1253238 - 1254248 + | alcohol dehydrogenase TERM 786 1255095 - 1255111 + G 72 -5.1 -4.7254 | TATTCTATCAGGACT CAGGG AACATAA CCCTG TTTTTAATAAAAAAT PTO1250 1254335 - 1257697 + | hypothetical protein TERM 787 1257823 - 1257839 + G 73 -3 -5.21709 | overlap 1257824 GGGTATAGTTATGGA TGGTTA TACAT TAACCG TTTTTTCATATGCCC TERM 788 1258608 - 1258631 + G 73 -4.5 -4.89393 | TATACGTTGTTTTTT CAGGTATGG CAGAAT CCGTTCCTG TTTTTATCGGCTTTA PTO1251 1257740 - 1259062 + | putative sugar transporter PTO1252 1260009 - 1259074 - | putative deoxyhypusine synthase TERM 789 1259446 - 1259472 + g 71 -9.6 -2.6187 | opp_overlap 1259454, overlap 1259439 1259443 1259442 1259454 GTCAGTCATACCGGG TATAAAAACCGG TAT CCTGTTTTTATA TGCATTGTAGATTAT TERM 790 1260053 - 1260072 + H 76 -8 -3.66908 | ATTTGTAGAAGTCTT TTGTAGAA GATT TTCTACAA TTACTTTTAAACGCC TERM 791 1260833 - 1260860 + G 89 -13 -2.65815 | opp_overlap 1260829 1260830 1260833, overlap 1260826 1260825 1260824 TGGCAGTACAATGGA TCATTGATATTG ATAT CAATATCAATGA TAATCTACATGTCAA TERM 792 1260860 - 1260833 - g 89 -13 -2.61548 | opp_overlap 1260826 1260825 1260824 1260833, overlap 1260829 1260830 TGGCAGTACAATGGA TCATTGATATTG ATAT CAATATCAATGA TAATCTACATGTCAA PTO1253 1260107 - 1262056 + | ferredoxin PTO1254 1262089 - 1262934 + | ferredoxin PTO1255 1263874 - 1262969 - | hypothetical protein TERM 793 1264555 - 1264541 - g 76 -5.6 -4.91109 | opp_overlap 1264526 CCTGCAGGATAAAAA GCCTGA GGT TCTGGC AGAGATAAAAAAATT PTO1256 1263954 - 1265261 + | folylpolyglutamate synthase/dihydrofolate synthase cdc6 1265309 - 1266535 + | cell division control protein 6 PTO1258 1267149 - 1266520 - | transcriptional activator PTO1259 1268541 - 1267180 - | beta-galactosidase TERM 794 1268293 - 1268315 + gH 70 -2.7 -5.13741 | GGTTCCGTCCGGAAA TAGGGATGG CCAGT CCATGTCTA TTTTTATTAAATTAA PTO1260 1268500 - 1269237 + | lipoate-protein ligase B PTO1261 1270752 - 1269205 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 795 1270888 - 1270866 - H 79 -3.6 -5.67063 | opp_overlap 1270856 TTGATGATAAAAAAA TTTATCTA TTTTTGT TAGATAAA GAAATATGACAGAAT TERM 796 1270985 - 1270999 + G 83 -10 -3.89435 | opp_overlap 1270985 TCACAGGTAATTACA GCCTTG CGT CAAGGC TTTCCATTCTTTCAA TERM 797 1270999 - 1270985 - g 75 -10 -2.93164 | opp_overlap 1270985 TCACAGGTAATTACA GCCTTG CGT CAAGGC TTTCCATTCTTTCAA TERM 798 1271196 - 1271212 + G 72 -8.7 -3.27923 | opp_overlap 1271183 1271196 1271195 CACCGCTGCAATAAC GGCATTC CAG GGATGCC TTGATGCTGTTAACA PTO1262 1270894 - 1271358 + | hypothetical protein TERM 799 1271507 - 1271487 - g 74 -5.5 -4.81852 | opp_overlap 1271487 1271489, overlap 1271489 TTACAAGGAATAAAA GATCATTGA TAT TCAATGATG TTTCAGGGCTTTATC TERM 800 1271505 - 1271489 - g 77 -8.1 -4.01597 | opp_overlap 1271487 1271489, overlap 1271487 ACAAGGAATAAAAGA TCATTGA TAT TCAATGA TGTTTCAGGGCTTTA TERM 801 1271489 - 1271505 + G 70 -8.1 -3.37283 | opp_overlap 1271489 1271487, overlap 1271487 ACAAGGAATAAAAGA TCATTGA TAT TCAATGA TGTTTCAGGGCTTTA rnhB 1271360 - 1271959 + | ribonuclease HII PTO1264 1272024 - 1272953 + | hypothetical protein PTO1265 1273498 - 1272938 - | hypothetical protein TERM 802 1273810 - 1273826 + r 82 -10.9 -2.78596 | TTTGAACCCGGGTTA GTGGCTT GGG AAGCCAC TGTGATACCAGGCTA PTO1266 1274363 - 1273866 - | hypothetical protein TERM 803 1274058 - 1274070 + g 72 -7.7 -3.79993 | overlap 1274035 ATATTTTATGTACTC CCTTG CAT CAAGG TCTTTTAATATGTAG PTO1267 1275620 - 1274391 - | transporter PTO1268 1275937 - 1275668 - | hypothetical protein TERM 804 1276740 - 1276726 - g 80 -10 -3.62597 | GCTACGGCTCAATAA CTCCAG TAT CTGGAG AGGTCAAGGATGCAA PTO1269 1276098 - 1277912 + | amino acid permease TERM 805 1278227 - 1278217 - g 71 -6.8 -4.15044 | GGTCTTTGCAAGAAA GGGT GAA ACCC AGGAGGAGTACTACG PTO1270 1277945 - 1279171 + | S-adenosyl-L-homocysteine hydrolase TERM 806 1279435 - 1279423 - g 74 -9.1 -3.54662 | opp_overlap 1279423 TGAAAGATATTACAA TGGCC GCG GGCCA TTTGAGGCACTTGGT TERM 807 1279423 - 1279435 + G 74 -9.1 -3.55801 | opp_overlap 1279423 TGAAAGATATTACAA TGGCC GCG GGCCA TTTGAGGCACTTGGT TERM 808 1279749 - 1279736 - g 76 -3.8 -5.24129 | CCCCTTGATAAAAAA GCTG AAAAAA CAGC CAGAATATTAAATGA TERM 809 1280074 - 1280060 - g 85 -5.8 -5.43866 | GAACTGGCAAAAAAA TATGAT TTT ATCATA ATAAATATAAAGGGT PTO1271 1279202 - 1280410 + | cofactor-independent phosphoglycerate mutase PTO1272 1280407 - 1280826 + | hypothetical protein PTO1273 1281752 - 1280823 - | ribonuclease Z PTO1274 1281929 - 1282108 + | hypothetical protein PTO1275 1282158 - 1282619 + | hypothetical protein PTO1276 1283121 - 1282609 - | hypothetical protein PTO1277 1283911 - 1283126 - | nucleoside-diphosphate-sugar epimerase PTO1278 1284026 - 1285192 + | transporter TERM 810 1285358 - 1285372 + G 72 -7.8 -3.85184 | overlap 1285351 1285367 TATCTTTTTCCAATG GGCTCC ACA GGAGTC TTTCCATATTTTACA PTO1279 1285256 - 1286056 + | dihydrodipicolinate synthase rpl7ae 1286129 - 1286512 + | 50S ribosomal protein L7Ae TERM 811 1286668 - 1286646 - g 75 -7.6 -4.19336 | AATCATCGCAAGAAA CGTCCTTGGC CCG GTCAAGGTCG GAGACGTGCTCATGC rps28e 1286518 - 1286727 + | 30S ribosomal protein S28e PTO1282 1286732 - 1286932 + | 50S ribosomal protein L24e PTO1283 1286929 - 1287351 + | nucleoside diphosphate kinase PTO1284 1287354 - 1289096 + | translation initiation factor IF-2 PTO1285 1289989 - 1289078 - | sodium/calcium exchanger protein PTO1286 1290378 - 1289986 - | S-adenosylmethionine decarboxylase proenzyme PTO1287 1291320 - 1290547 - | transcriptional regulator TERM 812 1290913 - 1290924 + g 100 -5.8 -5.80364 | TATTGATGTTACACC GGTG CATC CACC TTTTTTTGTTGAAAT thiE 1291956 - 1291342 - | thiamine-phosphate pyrophosphorylase PTO1289 1292957 - 1291953 - | AIR synthase PTO1290 1293724 - 1292954 - | phosphomethylpyrimidine kinase PTO1291 1293825 - 1295042 + | molybdopterin biosynthesis MoeA protein TERM 813 1295945 - 1295933 - g 74 -9.1 -3.42613 | opp_overlap 1295931 1295933, overlap 1295931 AAAGATAAATTAATA CTGGC AAT GCCAG GATTTCCAGTTTCAT PTO1292 1295033 - 1296748 + | molybdopterin biosynthesis MoeA protein PTO1293 1296745 - 1297287 + | molybdopterin-guanine dinucleotide biosynthesis protein A PTO1294 1297670 - 1297284 - | hypothetical protein TERM 814 1299790 - 1299780 - g 76 -5.4 -5.01535 | opp_overlap 1299780 TGATAATTACAAAAA GATC ATG GATC TGGTCTCATCAGGCA PTO1295 1297744 - 1300104 + | tricorn protease interacting factor F3 PTO1296 1300650 - 1300099 - | hypothetical protein TERM 815 1300455 - 1300471 + g 73 -3 -5.25893 | overlap 1300419 TTGAAACATCATAAT CATGGA AGTCA TCTATG TTTTTTCCTATCTCT PTO1297 1301622 - 1300696 - | histidinol-phosphate aminotransferase PTO1298 1303377 - 1301884 - | hypothetical protein TERM 816 1302494 - 1302481 - G 73 -6.7 -4.35992 | TACAAGAACAAAGAA CAGTG CAAG CACTG GAAAAATGTTGCTAT TERM 817 1303446 - 1303423 - H 74 -6.2 -4.42788 | opp_overlap 1303413 1303410, overlap 1303413 1303410 1303409 TCTAATTGTAGAAAA TGTTCTATAA TTAA TTATAAAACA ATGATCAAAATTACA PTO1299 1303469 - 1305655 + | ferredoxin TERM 818 1305946 - 1305962 + G 70 -7.9 -3.55444 | opp_overlap 1305941 AGTTGGAACAGCCCT GCTTGGC ATG GCCACGC TTTACACACTGGCAG PTO1300 1305665 - 1306450 + | cytochrome c oxidase assembly factor TERM 819 1306513 - 1306530 + G 82 -4.8 -5.3798 | TAACAACAACAATTG GCCTCA GAACAA TGGGGC TTTTTCTTGTTCTTC TERM 820 1306692 - 1306682 - g 76 -4 -5.30686 | overlap 1306687 AATAGGCAGAAAAAA TGTA ATA TACA TGGGTATAGCCACTT PTO1301 1306452 - 1307627 + | transporter PTO1302 1307842 - 1307630 - | hypothetical protein TERM 821 1307860 - 1307880 + r 71 -2.7 -5.5074 | opp_overlap 1307860 TCACCAGATATAATA TATTTCTAT TCT ATATAAATA TTTTTTATTACATTA TERM 822 1307939 - 1307924 - R 75 -3.4 -5.61277 | opp_overlap 1307924 TACAAAAAAATAAAA TTTAAA TATT TTTAAA TAATATAATCTTATG PTO1303 1308900 - 1308148 - | hypothetical protein TERM 823 1309748 - 1309765 + G 75 -7.7 -4.10657 | opp_overlap 1309750, overlap 1309751 ATCTTGGGGCTGACA CAGCTGC CGCA GCAGTTG TTTTAAGAGGTATCG PTO1304 1309225 - 1311750 + | cytochrome c oxidase polypeptide I/III TERM 824 1311905 - 1311878 - f 91 -11.4 -3.73414 | overlap 1311879 1311895 TAGAGTACAGGGAAA CTGGCATATGGA AGAA TCCATATGCCAT GGCAATTATAATCAT TERM 825 1311904 - 1311879 - f 100 -14.9 -2.83566 | overlap 1311878 1311895 AGAGTACAGGGAAAC TGGCATATGGA AGAA TCCATATGCCA TGGCAATTATAATCA TERM 826 1312149 - 1312133 - g 76 -3.7 -5.19328 | AGCCTATAACAAAAA CGGTT CTGATCC AACCG CATACATACATTTAT PTO1305 1311885 - 1312580 + | sulfocyanin PTO1306 1312590 - 1313408 + | cytochrome c oxidase polypeptide II PTO1307 1313450 - 1314319 + | protoheme IX farnesyltransferase PTO1308 1314353 - 1315072 + | hypothetical protein PTO1309 1315119 - 1315484 + | glucose/galactose transporter TERM 827 1315735 - 1315754 + G 70 -8.6 -3.08798 | TAGACTTTACATGCC TGAGTCAC CCAG GTGGCTCA TATTGCATGAAAAAT PTO1310 1315583 - 1316575 + | glucose/galactose transporter PTO1312 1319335 - 1317503 - | hypothetical protein PTO1311 1316605 - 1317564 + | delta-aminolevulinic acid dehydratase TERM 828 1317566 - 1317556 - GT 74 -5.4 -4.6955 | GAGGAATATATAAAA GATC ACT GATC CTGTAAACCTTGTTA TERM 829 1317885 - 1317867 - GT 72 -6 -4.44548 | opp_overlap 1317866 1317867 GATAGCGAATCAAAA TGCACG GTGTTTT CGTGCA GTATATTTACAGGGA TERM 830 1319330 - 1319356 + gT 72 -8 -3.31208 | opp_overlap 1319337, overlap 1319328 1319326 1319332 ATTTGGAGACATATT TACCATACCAGC GTT GCTGCTGTGGTG TATGTTATTATGAAC TERM 831 1319332 - 1319354 + gT 73 -8.4 -3.21696 | opp_overlap 1319337, overlap 1319330 1319328 1319326 TTGGAGACATATTTA CCATACCAGC GTT GCTGCTGTGG TGTATGTTATTATGA PTO1313 1320048 - 1319329 - | glycosyltransferase involved in cell wall biogenesis PTO1314 1320161 - 1321171 + | coenzyme PQQ synthesis protein E TERM 832 1321927 - 1321915 - g 70 -7.7 -3.55444 | TCTTGACCTTTCAAA GGCAA AGG TTGCC GTCCAGGGCTTTGGC TERM 833 1322066 - 1322056 - g 75 -6.8 -4.39386 | TGTAAACTATGAAAA GCTC TTA GAGC ATAAAAGAAAGGATG PTO1315 1321286 - 1322533 + | glutamate dehydrogenase PTO1316 1322599 - 1323336 + | DNA polymerase sliding clamp PTO1317 1323551 - 1323997 + | phenylacetic acid degradation protein paaI PTO1318 1324052 - 1325002 + | iron(III) dicitrate ABC transporter extracellular binding protein PTO1319 1325016 - 1326029 + | iron(III) dicitrate ABC transporter permease protein PTO1320 1326019 - 1326750 + | iron(III) dicitrate tABC ransporter, ATP-binding protein PTO1321 1328057 - 1326747 - | hypothetical protein PTO1322 1329300 - 1327969 - | DNA repair helicase PTO1323 1329625 - 1329335 - | hypothetical protein TERM 834 1329619 - 1329637 + g 83 -7.6 -4.58303 | opp_overlap 1329622, overlap 1329630 AATAAAGACCCACAT TAATCATA ATT TATGATTA TTTTATCATATTTAA fabG 1330442 - 1329672 - | 3-ketoacyl-(acyl-carrier-protein) reductase PTO1325 1330967 - 1330476 - | hypothetical protein PTO1326 1331504 - 1330992 - | hypothetical protein TERM 835 1331460 - 1331450 - G 70 -8.2 -3.34715 | opp_overlap 1331449 1331450, overlap 1331448 TACCGGTGGCAAATA CGGC TAT GCCG ATTATAAGTATAACA PTO1327 1332437 - 1331541 - | sodium-dependent phosphate transporter PTO1328 1333114 - 1332434 - | hypothetical protein PTO1329 1334830 - 1333154 - | Fe-S oxidoreductase PTO1330 1335448 - 1334918 - | acetyltransferase TERM 836 1335481 - 1335498 + r 74 -7.1 -4.29905 | overlap 1335478 1335497 CTATTTATCTATTTA TCCAAAA GATG TTTTGGA TTATTTTGATCTCCT PTO1331 1336113 - 1335499 - | phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase PTO1332 1336849 - 1336100 - | histidine biosynthesis protein HisF PTO1333 1337496 - 1336828 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 837 1336993 - 1337008 + g 72 -7.6 -3.7282 | ATTGTCCCAGAATTT TTCAGG TATG CCTGAA TTATTGGTGCCGTCA PTO1334 1338053 - 1337493 - | imidazole glycerol phosphate synthase subunit HisH hisB 1338574 - 1338050 - | imidazoleglycerol-phosphate dehydratase hisD 1339698 - 1338571 - | histidinol dehydrogenase PTO1337 1340344 - 1339685 - | ATP phosphoribosyltransferase TERM 838 1339773 - 1339790 + g 70 -8.5 -3.25791 | opp_overlap 1339771, overlap 1339772 TTATTTGAAATCACC CATGGAT TTAT ATCCATG ATCTTTTTTATTTCA tfb 1341934 - 1341002 - | transcription initiation factor IIB PTO1339 1342145 - 1341936 - | H/ACA RNA-protein complex component Gar1 TERM 839 1342420 - 1342394 - g 75 -10.2 -2.92851 | opp_overlap 1342394, overlap 1342396 AAAATATTGGACAGA GATGCCCCGA GTGTGGT TCAGGGCATC TTATAAGGGATTATG TERM 840 1342394 - 1342420 + G 75 -9.4 -3.31799 | opp_overlap 1342394 1342396 AAAATATTGGACAGA GATGCCCCGAGT GTG GTTCAGGGCATC TTATAAGGGATTATG TERM 841 1342499 - 1342514 + G 80 -7.5 -4.51174 | opp_overlap 1342494 CATCAATAGACCAGG GCCCG GAATGG CGGGC TTTTGATTCTGATCA tfb 1342372 - 1343286 + | transcription initiation factor IIB PTO1341 1344008 - 1343277 - | protein-L-isoaspartate O-methyltransferase PTO1342 1344622 - 1344011 - | GMP synthase subunit A PTO1343 1344671 - 1345330 + | glycosyltransferase PTO1344 1346438 - 1345287 - | permease PTO1345 1347822 - 1346659 - | ATP-dependent RNA helicase PTO1346 1347856 - 1349451 + | radical SAM superfamily protein PTO1347 1350098 - 1349448 - | L-fuculose phosphate aldolase PTO1348 1351005 - 1350139 - | hypothetical protein TERM 842 1350754 - 1350738 - G 73 -3.6 -5.06016 | AGGATATAAAGAAAA CACCGG ACGAA CCGTTG CTCAACATGTCCCTG PTO1349 1351848 - 1351039 - | signal sequence processing protein Sec11 precursor PTO1350 1353150 - 1351900 - | transporter TERM 843 1353148 - 1353128 - G 76 -5.5 -4.89477 | GCCGCAACAATAAAA GATCTTGAT CCT ATCAAAACC ATTGTTTTATGAATT TERM 844 1353268 - 1353246 - R 76 -8 -3.68836 | opp_overlap 1353243, overlap 1353244 ATTTTTAAAACAATA TTATTTATAA TTA TTATAAATAA TGGATCTTAATGCCT PTO1351 1354409 - 1353663 - | hypothetical protein TERM 845 1355126 - 1355111 - g 71 -6.8 -4.05816 | opp_overlap 1355124 TAAAATTATGATAAA TGGCGA CGTG CCGCCA GGATCAGGTCTTGGT PTO1352 1354833 - 1355822 + | mevalonate kinase hemH 1356695 - 1355811 - | phosphoribosylaminoimidazole-succinocarboxamide synthase PTO1354 1356774 - 1357307 + | inorganic pyrophosphatase PTO1355 1357304 - 1357579 + | hypothetical protein PTO1356 1358550 - 1357576 - | diphosphomevalonate decarboxylase PTO1357 1359386 - 1358580 - | hypothetical protein PTO1358 1359356 - 1359604 + | hypothetical protein PTO1359 1359608 - 1361041 + | transporter TERM 846 1361469 - 1361453 - g 70 -5.1 -4.6902 | opp_overlap 1361453, overlap 1361444 TCATAAGGTTAAAAA CCAGG GTGATGG CCTGG ATCTTTTAATAGCGC TERM 847 1362843 - 1362833 - g 72 -5.4 -4.57837 | opp_overlap 1362833, overlap 1362822 1362821 AGAGCTTGTTAAAAA CAAG AAG CTTG TTTTCACCGTTGAGA PTO1360 1361262 - 1363013 + | pyruvate ferredoxin oxidoreductase, alpha chain PTO1361 1363016 - 1363864 + | 2-oxoacid ferredoxin oxidoreductase subunit beta PTO1362 1363894 - 1364226 + | hypothetical protein PTO1363 1365448 - 1364216 - | arginine deiminase TERM 848 1365221 - 1365239 + g 85 -5.2 -5.60689 | opp_overlap 1365221 GAGCTTATCCATAAA GGCATCTG ATT CAAGTGCC TTTTTTATTATCTCG TERM 849 1365260 - 1365281 + g 75 -3.2 -5.24291 | TATTATCTCGTCCTT TAATATTA TGACAT TAATATTA TTTTCTTTTAATTTT TERM 850 1365369 - 1365359 - G 100 -8.2 -5.27335 | CCTCTCAAATAAAAA CGCC TTT GGCG CAAACATGGCATAGT PTO1364 1365591 - 1366991 + | prolyl-tRNA synthetase PTO1365 1366991 - 1367623 + | phosphoserine phosphatase PTO1366 1368002 - 1367610 - | hypothetical protein PTO1367 1369048 - 1368032 - | aspartate-semialdehyde dehydrogenase TERM 851 1368184 - 1368203 + g 80 -2.8 -5.60864 | gap 1, overlap 1368186 CCATGCCTGAGACAT CG-TGAACC TGT GGTGCATCG TTTTTTTCATGTATA PTO1368 1370049 - 1369036 - | aspartokinase TERM 852 1370068 - 1370078 + H 73 -4 -5.32882 | AGTGTATATCTATTT CATT AAT AATG TTTTTTATAATCATA TERM 853 1370204 - 1370178 - H 74 -5.4 -4.84673 | opp_overlap 1370164 1370171 1370178 1370187, overlap 1370171 GTAAATAATATAAAA TATATAATTTAT TTT ATATATTATATA AAGAATATTTAATTA TERM 854 1370250 - 1370266 + H 73 -2.3 -5.75342 | AACATTATTAATATT TTTTGTT TAA AACCAAA TTTTTTTTAAAAAAA TERM 855 1370777 - 1370759 - g 76 -5.2 -5.03994 | opp_overlap 1370763, overlap 1370760 1370763 CTGCAGAGATAAAAA CGTACGGT GAA ACCGTTCA TACATTAATAGAAAC TERM 856 1371343 - 1371327 - g 74 -8 -3.89055 | ACAGATCTTCACAAA GCCTGT TACTG ACAGGC CAACGTTCTTCTTTG PTO1369 1370353 - 1371459 + | 4-hydroxyphenylpyruvate dioxygenase PTO1370 1371456 - 1372307 + | fumarylacetoacetase PTO1371 1372309 - 1373442 + | homogentisate 1,2-dioxygenase PTO1372 1374111 - 1373452 - | TenA/THI-4 family protein TERM 857 1374216 - 1374226 + H 73 -4 -5.42975 | opp_overlap 1374216 TAATTAATTATATAA TATG TTT CATA TTTTTATTTATATAA PTO1373 1374272 - 1374421 + | hypothetical protein PTO1374 1374657 - 1374418 - | hypothetical protein PTO1375 1374875 - 1374690 - | kinase PTO1376 1375129 - 1374872 - | kinase PTO1377 1376418 - 1375126 - | hypothetical protein TERM 858 1375175 - 1375160 - G 74 -9 -3.60792 | CTTGCAAGCTTTAAA GGCATC GATA GATGCC TCCTGGCTATTACAG PTO1378 1377185 - 1376418 - | undecaprenyl pyrophosphate synthetase PTO1379 1378137 - 1377217 - | methyltransferase PTO1380 1380158 - 1378134 - | ski2-like helicase TERM 859 1379816 - 1379832 + g 76 -3.7 -5.28778 | opp_overlap 1379816 CACGTTCGGAGGTAA CAACAAT AAC ATCGTTG TTTTTTATAAATGAT PTO1381 1380247 - 1381152 + | acetyl esterase PTO1382 1382085 - 1381147 - | cytidylyltransferase family protein TERM 860 1382009 - 1382019 + g 73 -4 -5.0538 | AATGATATTATATAT TTTG TAT CAAA TTTTTTAAAATCAAA TERM 861 1382163 - 1382177 + H 70 -7.2 -3.50393 | TTTATTTTTTTGTAA TCCATA AAT TATGGA TTATATAAAATAAAC TERM 862 1383751 - 1383732 - g 73 -6.4 -4.21303 | overlap 1383742 1383744 AAAAACAAGGATAAA GCTTCTAG AATA CAAGAAGC TTGAAAAAAGAAACA TERM 863 1384042 - 1384020 - g 72 -7.1 -3.91716 | TCAGGGTTCAAAGAA GATCATTGC AATAA ACAATGATC CATCAGCGCCAATAT PTO1383 1382320 - 1384143 + | electron transfer flavoprotein alpha and beta-subunit TERM 864 1384750 - 1384768 + G 79 -6.7 -4.84359 | GATAATACGTGCCGA TCCTGTG CTCAC CGCAGGA TTTTTATACACATAC PTO1384 1384136 - 1385326 + | FixC protein PTO1385 1385331 - 1385618 + | ferredoxin like protein PTO1386 1385953 - 1385633 - | hypothetical protein PTO1387 1386031 - 1388181 + | transporter PTO1388 1388215 - 1388541 + | ParR family transcriptional regulator PTO1389 1388972 - 1388538 - | transcriptional regulator TERM 865 1388999 - 1389017 + H 73 -9 -2.91239 | opp_overlap 1388990 1389010 1389012 1389014, overlap 1388986 1389001 1389003 1389010 CAGATATCTGTTATT GATATCTA TAA TAGATATC TATATCAAGTATATA TERM 866 1389506 - 1389483 - g 76 -8.8 -3.71148 | gap 1, opp_overlap 1389482 1389481, overlap 1389484 TAAAAGCGAGTTAAA GCC-CGGTGCC GGC GGTACCGAGGC AATTTATGCAATTCT PTO1390 1389292 - 1390119 + | alpha glucoside ABC transporter solute binding protein PTO1391 1390213 - 1390872 + | alpha glucoside ABC transporter solute binding protein PTO1392 1390878 - 1391732 + | alpha glucoside ABC transporter permease protein PTO1393 1391725 - 1392558 + | alpha glucoside ABC transporter permease protein TERM 867 1393245 - 1393210 - g 72 -7.6 -3.85698 | opp_overlap 1393199 GGCGGCCGTGATAAA TCACGGGGTTATGGAA CAGC TTGCAGAACCCCTTGA AATCTATGATAATCC PTO1394 1392545 - 1393678 + | alpha glucoside ABC transporter ATP-binding protein PTO1395 1394355 - 1393675 - | glutamine amidotransferase class-II PTO1396 1394436 - 1395569 + | acyl-CoA dehydrogenase, short-chain specific PTO1397 1395607 - 1396806 + | glutamyl-tRNA(Gln) amidotransferase subunit D PTO1398 1396811 - 1398586 + | glutamyl-tRNA(Gln) amidotransferase subunit E PTO1399 1399603 - 1398572 - | cytochrome P450 TERM 868 1399826 - 1399816 - H 74 -2.6 -5.73978 | opp_overlap 1399809, overlap 1399809 ATTATAAATAAAAAA TTTA TTA TAAA ACCATGATTCATGTC PTO1400 1399932 - 1400369 + | NADH dehydrogenase subunit A PTO1401 1400366 - 1400830 + | NADH dehydrogenase subunit B PTO1402 1400835 - 1401290 + | NADH dehydrogenase subunit C PTO1403 1401291 - 1402394 + | NADH dehydrogenase subunit D PTO1404 1402391 - 1403425 + | NADH dehydrogenase subunit H PTO1405 1403415 - 1403927 + | NADH dehydrogenase subunit I PTO1406 1403924 - 1404178 + | NADH dehydrogenase subunit J PTO1407 1404168 - 1404389 + | NADH dehydrogenase subunit J PTO1408 1404386 - 1404685 + | NADH dehydrogenase subunit K TERM 869 1405030 - 1405050 + G 70 -9.1 -3.19563 | overlap 1405034 1405041 1405044 1405049 TAAAGTTTTCAAGGT TCGATGAGA TAT TCTCATTGA TATTAATAATATCTG TERM 870 1405263 - 1405249 - g 74 -5.7 -4.84311 | CGGCATATAACAAAA CAAGG AGAAA CCTTG AGGGTGCTGTTAAGT TERM 871 1405266 - 1405281 + G 76 -5.4 -4.8543 | AGGAGAAACCTTGAG GGTGCT GTTA AGTACC TTTTTATAGGCGTTA PTO1409 1404762 - 1406240 + | NADH dehydrogenase subunit N PTO1410 1406251 - 1406499 + | hypothetical protein PTO1411 1406846 - 1406496 - | hypothetical protein asnC 1406921 - 1408204 + | asparaginyl-tRNA synthetase hemE 1408201 - 1409196 + | uroporphyrinogen decarboxylase TERM 872 1409881 - 1409895 + G 77 -6.4 -4.65895 | opp_overlap 1409872, overlap 1409872 ATAATAGCTGGCAGA TGCAGG CAG CTTGCA TTTTTAAATCCGCAG gyrB 1409284 - 1411224 + | DNA gyrase subunit B TERM 873 1413197 - 1413187 - g 75 -8.2 -3.72576 | TGTGGCGGCATCAAA CGGC AAG GCCG CGGTCTTTCTAAGCG PTO1415 1411235 - 1413604 + | DNA gyrase subunit A PTO1416 1414378 - 1413605 - | pyrroline-5-carboxylate reductase PTO1417 1415471 - 1414485 - | homoserine dehydrogenase TERM 874 1415447 - 1415435 - G 76 -9.1 -3.72241 | TATCAAGCACTGAAA GGCCA ATA TGGCC AAGGCCTATTATTGA TERM 875 1415460 - 1415470 + g 76 -5.4 -4.95876 | GCCAAGGCCTATTAT TGAG ATC CTCA TTTTTGATTATCATT PTO1418 1416316 - 1415510 - | hypothetical protein PTO1419 1417355 - 1416303 - | replication factor A TERM 876 1417018 - 1416998 - G 73 -8.4 -3.60627 | TTACCTTACCGGAAA CTGTTACA AATGG TGTAACAG GATTCAAATCCTTTA PTO1420 1417966 - 1417361 - | hypothetical protein PTO1421 1418986 - 1418012 - | NMD protein affecting ribosome stability and mRNA decay TERM 877 1418341 - 1418360 + g 70 -7.2 -3.74056 | opp_overlap 1418341 ATATTCTTATTAAAT GGGTGTAT CTAA ATACATCC TTTCCATCCTTCTTG PTO1422 1420862 - 1419018 - | thymidylate kinase TERM 878 1419546 - 1419558 + g 70 -7.7 -3.69323 | AAGGCCATTCATGTA GCTGT GAT ACAGC TTTCCATCCTGGTAC TERM 879 1419708 - 1419721 + g 75 -2.3 -5.41359 | opp_overlap 1419709, overlap 1419709 CTTTTTATCCTTAAA TGGTG AGTC CACCC TTTTTTCCTTTAATT PTO1423 1420966 - 1421535 + | phosphoglycerate mutase/fructose-2,6-bisphosphatase TERM 880 1422102 - 1422090 - g 70 -2.7 -5.03145 | GAATGCCTTAAAAAA CATTA TTT CAATG CAAAAAACCTAAAGG PTO1424 1421568 - 1422794 + | dihydroorotase PTO1425 1423479 - 1422769 - | phosphoglycolate phosphatase TERM 881 1422961 - 1422939 - Gf 79 -7.8 -3.95725 | opp_overlap 1422938 1422942, overlap 1422942 AATCGCCAATAACAA GAACATTGTT ATA ATCAATGTTC ATAATATCAATCATC PTO1426 1423472 - 1423747 + | hypothetical protein PTO1427 1423944 - 1423723 - | hypothetical protein PTO1428 1426994 - 1423971 - | MMPL family protein TERM 882 1426894 - 1426884 - G 75 -3.2 -5.1861 | TGTATCATTAAAAAA CTGC TCG GCAA ACGGTAGCATCAATA PTO1429 1427067 - 1427963 + | O6-methylguanine-DNA methyltransferase/endonuclease V PTO1430 1428027 - 1428272 + | hypothetical protein PTO1431 1429421 - 1428276 - | serine--pyruvate aminotransferase TERM 883 1429313 - 1429290 - G 71 -3.8 -4.87273 | AACAGTGTATAAAAA GCCATTGAGT GCGT ACTTCATGGC CTCAACAAATTCAGG PTO1432 1430171 - 1429446 - | precorrin-4 C11-methyltransferase PTO1433 1430818 - 1430192 - | precorrin-2 C20-methyltransferase TERM 884 1430383 - 1430395 + g 75 -3.5 -5.33785 | opp_overlap 1430383 TGTCTGAATTATCAA TTAAA CCC TTTAA TTTTTTATAATCATT PTO1434 1431971 - 1430811 - | decarboxylating precorrin-6Y C5,15-methyltransferase TERM 885 1431003 - 1430990 - G 77 -8.1 -3.96068 | opp_overlap 1430990 1430989 CTATGTTAAGAACAA GCCTG CCTC CAGGC CTTAATCTTTTATAT PTO1435 1433137 - 1431968 - | uroporphyrin-III C-methyltransferase TERM 886 1432906 - 1432929 + g 78 -5.4 -5.08878 | opp_overlap 1432909, overlap 1432907 TAACGACATTTTCAT AGATTTTTGA GTAT TCAAAAATCA TTTTATTTATCTCTT TERM 887 1432907 - 1432928 + g 74 -8.9 -3.62887 | opp_overlap 1432909, overlap 1432906 AACGACATTTTCATA GATTTTTGA GTAT TCAAAAATC ATTTTATTTATCTCT PTO1436 1434515 - 1433202 - | transporter PTO1437 1434591 - 1436249 + | dihydroxy-acid dehydratase PTO1438 1437184 - 1436252 - | gluconate 2-dehydrogenase PTO1439 1437253 - 1437699 + | hypothetical protein PTO1440 1438070 - 1437696 - | hypothetical protein TERM 888 1438223 - 1438208 - g 81 -3.3 -5.64274 | TGATGTATAAAAAAA GCTAT AATGAA ATAGC ATCATCCGTTATAAA TERM 889 1438384 - 1438366 - g 72 -9 -3.28323 | opp_overlap 1438364, overlap 1438364 AAAAATGTTATAATA GATTATTC AAA GAATAATC AGATCTTTGCTGATG PTO1441 1438165 - 1438524 + | hypothetical protein PTO1442 1439746 - 1438499 - | glycerate kinase, putative TERM 890 1439604 - 1439614 + g 71 -4 -4.90321 | ATTAAAAATATTCTT TTTG AAT CAAA TTTTATATTATTTTT PTO1443 1441035 - 1439803 - | peptide chain release factor 1 TERM 891 1441427 - 1441452 + G 72 -5.5 -4.56597 | gap 1 CGGAACTGAGCCAGG GCAT-ACAACAG ATA CTGTTGCGATGC TTTTTGCAGAAAGGA pyrH 1441038 - 1441754 + | uridylate kinase PTO1445 1441735 - 1442250 + | hypothetical protein PTO1446 1442841 - 1442245 - | phosphoglycerate mutase family protein TERM 892 1444933 - 1444959 + G 75 -8.1 -3.73068 | gap 1, opp_overlap 1444932, overlap 1444933 ACTATTGGATAGGAG CT-CCATGGCAG GTTC CTGCTATGGAAG TTGTTGCATTACACC PTO1447 1443273 - 1445123 + | oligopeptide ABC transporter Opp2, extracellular binding protein PTO1448 1445120 - 1446106 + | oligopeptide ABC transporter Opp2, permease protein PTO1449 1446111 - 1447079 + | oligopeptide ABC transporter Opp2, permease protein PTO1450 1447094 - 1448068 + | oligopeptide ABC transporter Opp2, ATP binding protein PTO1451 1448065 - 1448850 + | oligopeptide ABC transporter Opp2, ATP binding protein PTO1452 1450753 - 1448951 - | glycosy hydrolase family protein PTO1453 1452210 - 1450723 - | beta-galactosidase TERM 893 1452478 - 1452488 + G 70 -2.6 -5.09762 | TACCACAACCACGTG TATA TGA TATA TTTTCTTTATTGGAA PTO1454 1452327 - 1453358 + | transcriptional regulator TERM 894 1454013 - 1453997 - g 90 -2.3 -5.9218 | opp_overlap 1453997, overlap 1453999 GAGATAATAAAAAAA TATGATA ATG TATCAAA TGTTACCTTTAGATA TERM 895 1454011 - 1453999 - g 70 -4.9 -4.57921 | opp_overlap 1453997, overlap 1453997 GATAATAAAAAAATA TGATA ATG TATCA AATGTTACCTTTAGA PTO1455 1453715 - 1454125 + | hypothetical protein PTO1456 1454389 - 1455156 + | acid phosphatase SurE PTO1457 1455429 - 1455145 - | membrane spanning protein TERM 896 1455465 - 1455484 + r 77 -5.2 -5.08088 | opp_overlap 1455465 TGATTATAAAATTAT TATAAAAA AATA TTTTTATA TTTTTATTCAAGCTT PTO1458 1456969 - 1455488 - | membrane associated protein PTO1459 1459689 - 1458076 - | acyl-CoA dehydrogenase TERM 897 1458515 - 1458491 - G 84 -11.5 -3.2375 | overlap 1458486 GATGTTACAATTGAA TCCCTGTGGAA TTT TTCAACAGGGA AATCATAAAGAAAGC PTO1460 1460381 - 1459749 - | membrane spanning protein PTO1461 1461911 - 1460613 - | ammonium transporter TERM 898 1461781 - 1461750 - G 70 -4.7 -4.57533 | gap 2, opp_overlap 1461759 1461768, overlap 1461759 AAGAACAGCAGAAAA TGCGTATAATGCCAT CATC ATGGCATT-TAC-CA TGTATTTTCTCTTTG TERM 899 1461759 - 1461774 + g 70 -7.6 -3.68557 | opp_overlap 1461759 1461750, overlap 1461768 AGAAAATGCGTATAA TGCCAT CATC ATGGCA TTTACCATGTATTTT PTO1462 1463772 - 1462000 - | glutamate synthase [NADPH] large chain fragment II PTO1463 1465811 - 1463769 - | glutamate synthase [NADPH] large chain fragment II PTO1464 1465948 - 1467171 + | 3-isopropylmalate dehydratase large subunit PTO1465 1467168 - 1467665 + | 3-isopropylmalate dehydratase TERM 900 1468498 - 1468487 - g 74 -5.8 -4.67353 | TTATCGATTTAAAAA GGCT CTAC AGCC TGTCAAATCTTGTTG aksA 1467724 - 1468851 + | trans-homoaconitate synthase TERM 901 1468952 - 1468936 - f 70 -3.7 -5.1383 | opp_overlap 1468936, overlap 1468938 AATAATATATAAAAA TTGATCA GTA TGATCCA TCTTGCATATGATAT PTO1467 1468945 - 1469769 + | RimK-like protein PTO1468 1470782 - 1469748 - | acetylornithine deacetylase PTO1469 1471609 - 1470779 - | RimK-like protein TERM 902 1471099 - 1471088 - G 70 -5.8 -4.30719 | GCTGCCCACAACAAA GACC CTCA GGTC CCGGTTAAAATCGTT PTO1470 1472778 - 1471606 - | acetylornithine aminotransferase PTO1471 1473526 - 1472768 - | acetylglutamate kinase TERM 903 1472844 - 1472827 - G 73 -4.1 -5.07486 | GATTGCCAATAAAAA CCTCC CTTACACC GGAGG AGACGGCTATATCGG PTO1472 1474572 - 1473529 - | N-acetyl-gamma-glutamyl-phosphate reductase PTO1473 1474818 - 1474576 - | hypothetical protein PTO1474 1475010 - 1475459 + | phosphoribosylaminoimidazole carboxylase TERM 904 1475709 - 1475693 - g 74 -5.9 -4.65182 | GAGAAATCAAATAAA TTAAGAC CTG GCCTTAA GGCAATAGAAATAAA PTO1475 1475456 - 1476541 + | phosphoribosylaminoimidazole carboxylase ATPase subunit PTO1476 1476575 - 1477615 + | oxygen-independent coproporphyrinogen III oxidase PTO1477 1477612 - 1478172 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 905 1478216 - 1478186 - f 78 -7.2 -4.52857 | opp_overlap 1478195, overlap 1478195 AGTTTCTATAGAAAA TATATAAAATTTTA AAA TAAAATTATATATA CACAGTTACCATATC TERM 906 1478684 - 1478669 - g 72 -7.6 -3.76952 | GTCATTTAATTTAAA TGTGCA TGAC TGCACA TCAGGCTTTAGGATA PTO1478 1478238 - 1478990 + | dolichol-phosphate mannosyltransferase PTO1479 1480259 - 1478961 - | NADH dehydrogenase PTO1480 1480362 - 1480288 - | hypothetical protein PTO1481 1481065 - 1480880 - | hypothetical protein PTO1482 1483469 - 1481124 - | E1-E2 ATPase TERM 907 1482202 - 1482218 + g 71 -8.1 -3.48738 | opp_overlap 1482201 1482202 CCAAAGCGGGCAAAC TCATCAA TTT TTGATGA TATTTCCTGGTAATC TERM 908 1482610 - 1482638 + g 76 -10.3 -2.79831 | ATGGATCCCTTTTTT GCCATGTCCATTG CAC CAATGGCCATCGC TATCGTAAAGGTTGC PTO1483 1484816 - 1483485 - | amino acid permease TERM 909 1483967 - 1483933 - G 74 -9.3 -3.07222 | AGTATCATTGCAAGA GTTGCCGATGCAGTT GCCAT AAGTGCACCGGCATC AACAAGTATAAAAAT TERM 910 1484931 - 1484917 - H 72 -7.2 -3.81929 | TAATAATTTATTAAA CATTGA AAT TCAATG ATAGGTGCAGTTGAT PTO1484 1484929 - 1486278 + | glycerol kinase PTO1485 1486713 - 1486273 - | hypothetical protein TERM 911 1486519 - 1486538 + g 72 -5 -4.7497 | opp_overlap 1486519 1486522, overlap 1486522 TTTAATGTAATTAAA GGATAACC TCCC GGTTATGC TTTTTAATGAATCCA PTO1486 1487954 - 1486710 - | anaerobic glycerol-3-phosphate dehydrogenase subunit A TERM 912 1488067 - 1488046 - g 79 -5.2 -5.31877 | opp_overlap 1488046 ATTCATGATAAAAAA GATCATCG TTTTAT CAATGATC ATTATTATATTAATA PTO1487 1488026 - 1489507 + | thermopsin precursor TERM 913 1489917 - 1489907 - g 70 -8.2 -3.27408 | overlap 1489905 1489908 GCCGATGTAAATATA GCCG GTG CGGC AGCAGCTGCAGGATC PTO1488 1489574 - 1490008 + | CoxG protein PTO1489 1491838 - 1490009 - | prolyl endopeptidase TERM 914 1491973 - 1491938 - H 100 -16.4 -2.89564 | GGTTCACCGGACAGA TTATGCATGCATCTCC CTTT GGAAATGCACGCATAA ACCCAGGACCAAGGA TERM 915 1493073 - 1493061 - g 70 -2.7 -5.1244 | GGATGAATATAAAAA GCTTT CAA AAAAC ATCATCGATGTTATA TERM 916 1493083 - 1493073 - g 78 -5.4 -5.03747 | opp_overlap 1493073 AAAGCTTTCAAAAAA CATC ATC GATG TTATACCGCCGCTTT PTO1490 1492186 - 1493238 + | dGTP triphosphohydrolase PTO1491 1493682 - 1493227 - | acetyltransferase PTO1492 1495564 - 1493654 - | glucoamylase TERM 917 1494016 - 1494028 + gr 81 -5.5 -5.26875 | overlap 1494017 CCGTGGATACAATTC TCGGA TCG TCCGG TTTTTTAATTCCAAA TERM 918 1494455 - 1494469 + gr 74 -7.8 -3.50303 | overlap 1494453 1494465 TATTGCCGATTCATC CTCCTG TAT CGGGAG TATTCTCTTTCCATC TERM 919 1494914 - 1494892 - GR 83 -8.4 -4.14392 | opp_overlap 1494904 1494907 TGTTAATCCTTAAAA CTGTGTCAAG ATC CCTGGCACAG GCTATGTAATAGTAA PTO1493 1496627 - 1495617 - | sugar ABC transporter ATP binding protein PTO1494 1498330 - 1496624 - | sugar ABC transporter fusion protein TERM 920 1496744 - 1496728 - G 75 -6.5 -4.36914 | overlap 1496740 TGGCCGCTGATAAAA GGCCGTA ATC TATGGCC TCATGGCCTATGGAG TERM 921 1498214 - 1498226 + g 70 -4.9 -4.614 | opp_overlap 1498214 ATTCTGGGTTTCAAA TGTTA AAA TAACA TTTTCTATCATTGGA TERM 922 1498344 - 1498362 + r 72 -6.2 -4.33907 | ATTCCGGATTCTCTA TTTATAAA TGG TTTATAAA TTTTCACTCTTTATC PTO1495 1499786 - 1498356 - | sugar ABC transporter extracellular solute binding protein TERM 923 1498412 - 1498423 + g 73 -7.2 -4.08485 | ATGCAGTTGAAAGTG CGGC AGTG GCCG TTTCCTTTCCCTCAA PTO1496 1499885 - 1500388 + | hypothetical protein PTO1497 1500421 - 1501182 + | hypothetical protein PTO1498 1501182 - 1501994 + | multi drug ABC transporter permease protein PTO1499 1501994 - 1502866 + | multi drug ABC transporter ATP binding protein PTO1500 1503672 - 1502863 - | radical SAM family protein PTO1501 1504900 - 1503659 - | hypothetical protein TERM 924 1505060 - 1505043 - H 70 -2.1 -5.626 | gap 1 TATTTTATAAAAAAA GTATT-TC AAA GATAATAC AATGTAAAAATATGG TERM 925 1506163 - 1506146 - g 80 -7.7 -4.51363 | overlap 1506147 TATGAAATATCAAAA CGCATCG AGGA CGATGCA ATAATCGTTGGCGAT TERM 926 1506162 - 1506147 - g 72 -9 -3.29733 | overlap 1506146 ATGAAATATCAAAAC GCATCG AGGA CGATGC AATAATCGTTGGCGA PTO1502 1505072 - 1506718 + | pyruvate dehydrogenase PTO1503 1506724 - 1507434 + | hypothetical protein PTO1504 1508256 - 1507435 - | 3-hydroxybutyryl-CoA dehydrogenase PTO1505 1509419 - 1508253 - | acetyl-CoA acetyltransferase PTO1506 1509935 - 1509432 - | hypothetical protein PTO1507 1510274 - 1509966 - | hypothetical protein TERM 927 1510280 - 1510303 + H 78 -7 -4.55446 | opp_overlap 1510279 1510284, overlap 1510284 GGCTTACCATAAACC TAAATATAAA AATC TTTATATTTA TTTTCCTATTTCTTA PTO1508 1510363 - 1511121 + | hypothetical protein PTO1509 1512455 - 1511118 - | amino acid permease TERM 928 1511348 - 1511331 - G 75 -3.3 -5.32882 | opp_overlap 1511332, overlap 1511332 TATGATTATAAAAAA TGGCCTG CCTG CAAGCCT TTTTGTTTCCCTTTT TERM 929 1511332 - 1511347 + g 79 -4.6 -5.34381 | opp_overlap 1511332 1511331 ATGATTATAAAAAAT GGCCTG CCTG CAAGCC TTTTTGTTTCCCTTT TERM 930 1511527 - 1511543 + g 70 -5.2 -4.57073 | opp_overlap 1511527, overlap 1511517 ACCGGCGTTGAGAAC CTATCA ATGTA TGATAG TTTTTCCGGCAGCTC PTO1510 1512828 - 1512499 - | hypothetical protein PTO1511 1515268 - 1512821 - | penicillin acylase TERM 931 1514344 - 1514364 + g 72 -9 -3.32984 | TCGTTAAATGTGGAT CGTTGGCA AGCAG TGCCGACG TGTTATCCGTTTTAA PTO1512 1515907 - 1515494 - | hypothetical protein PTO1513 1516155 - 1515907 - | hypothetical protein TERM 932 1516246 - 1516264 + H 87 -11.8 -2.7317 | opp_overlap 1516241, overlap 1516260 CATAAGTTAAGGTTA CCATACAG GGC CTGTATGG TCATTGACAATATGT pgk 1516468 - 1517712 + | phosphoglycerate kinase PTO1515 1517702 - 1518121 + | prefoldin subunit alpha TERM 933 1518980 - 1518962 - g 85 -6 -5.38951 | AATGGAGATAAAAAA GCCAATAA TGT TTGTTGGC GTGGGCCAGGGATTA PTO1516 1518105 - 1519052 + | signal recognition particle receptor FtsY PTO1517 1519718 - 1519044 - | transcriptional regulator PTO1518 1521530 - 1519791 - | hypothetical protein TERM 934 1519959 - 1519946 - G 73 -8.1 -3.65812 | TCTCGTTGAATATAA CACCG TTTG CGGTG TACATATCCGGCCCA PTO1519 1521824 - 1524154 + | phosphoenolpyruvate synthase PTO1520 1524930 - 1524151 - | chorismate synthase TERM 935 1525213 - 1525195 - g 73 -3.9 -5.07053 | AACGATTTTAAAAAA TTCTACG AGGAG CATAGAA TAATAAAGAGCGGGC PTO1521 1525051 - 1525401 + | hypothetical protein TERM 936 1525398 - 1525412 + F 100 -5.8 -6.11019 | TGATGGTGAGAACGT TTAAAC AAT GTTTAA TTTTTTTTACTTTTT PTO1522 1525529 - 1526113 + | alkyl hydroperoxide reductase subunit c PTO1523 1526165 - 1527184 + | transcriptional regulator PTO1524 1527257 - 1527886 + | 30S ribosomal protein S3Ae PTO1525 1528018 - 1528284 + | hypothetical protein TERM 937 1528313 - 1528282 - f 70 -6.2 -4.18934 | overlap 1528285 CATGATTTTAATAAA TAATATTTATACAA AAAT TCATATAAATATTA TTTTTATAGGCATCG TERM 938 1528960 - 1528972 + G 81 -5.5 -5.27779 | overlap 1528961 1528971 AAAAGCGTTTCGATC TCCTC TGC GAGGG TTTTTTAATATTAAA PTO1526 1528338 - 1529570 + | phosphodiesterase I/nucleotide pyrophosphatase PTO1527 1530736 - 1529627 - | cysteine desulfurase PTO1528 1531002 - 1531700 + | transcriptional regulator PTO1529 1534236 - 1531702 - | MMPL family protein TERM 939 1533021 - 1533009 - G 74 -4.8 -4.95155 | opp_overlap 1533009 TTGATATTATAAAAA GCAG GTAAT CTGC TGATATTCCAAGGAT TERM 940 1533238 - 1533227 - G 72 -5.8 -4.37198 | opp_overlap 1533227 1533221 AATCCAAAGGCAAAA CCAG CCTT CTGG GTTTCCTTATTTGTT PTO1530 1535522 - 1534368 - | tetracycline resistance protein TERM 941 1535424 - 1535412 - G 74 -7.7 -3.9373 | TATTGAAAATTCAAA TGGTG TGG CACCA AGATCCCTTGTATAA TERM 942 1535621 - 1535601 - H 71 -7.1 -4.00934 | opp_overlap 1535600 ATTTGAAACAGTAAA TTATAAAAA ATA TTTTTATAA ATGATTATAAGCAAT PTO1531 1535654 - 1536163 + | beta carotene hydroxylase PTO1532 1536168 - 1537649 + | phytoene dehydrogenase PTO1533 1538492 - 1537605 - | glycosyl transferase PTO1534 1539226 - 1538489 - | lycopene cyclase TERM 943 1538992 - 1538978 - G 76 -2.8 -5.37345 | overlap 1538987 TGGAACCACAAAAAA GAAAAG TAT CTCCTC AACAGGAAGATTATA TERM 944 1539121 - 1539103 - G 74 -5.3 -4.78107 | CAGGATCAGTAAAAA GCATTGC ATATA ACAATGC CCTGTAATTCCTTAC PTO1535 1540068 - 1539217 - | phytoene synthase