TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.538628 %AT, 1181177 nt, 10120 terms. Intergenic: 0.562459 %AT, H2T: 236993 nt, 2004 terms; T2T: 92299 nt, 1536 terms; H2H: 75938 nt, 1237 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|171462832|ref|NC_010531.1| Polynucleobacter necessarius subsp. necessarius STIR1, complete genome (length 1560469) TERM 1 173 - 187 + G 75 -10 -3.48593 | CTGGGGTTTTGGGAT GATGCC GTT GGCATC TTATCTCGCGAACTA TERM 2 890 - 900 + G 71 -6.8 -4.15044 | GAAGAGTTTTTCTAC GCCT TTG AGGC TTTATTAAGCAACAA TERM 3 1351 - 1328 - g 78 -5.2 -5.05782 | gap 1 ATGTACTCCAAAAAA CGTCCG-GCCA ATA TAGCCCGGCCG CGCCAAATTGCTATG Pnec_0001 113 - 1537 + | chromosomal replication initiator protein DnaA TERM 4 2103 - 2116 + G 78 -5.9 -4.86731 | opp_overlap 2103 AAATGGTTGTTCAAA GCGGT AAAA GCCGC TTTTCTTTACAAACA Pnec_0002 1802 - 2917 + | DNA polymerase III, beta subunit TERM 5 4777 - 4791 + G 70 -5 -4.37658 | overlap 4777 TACCAAGTGATTCAG TCGATT GTC GATCGA TTTTCTCGCACCATT TERM 6 4886 - 4867 - g 80 -7.2 -4.70659 | opp_overlap 4867 4879 CTGGATACTGAAAAA TCAGCAAA TGAT TCTGCTGA TCGTTTGCGACAAGC TERM 7 5409 - 5397 - g 85 -3.4 -5.47218 | GTTCATTGAAAAAAA TGCA CTTAT TGCA CGCAACCTAGACGTT Pnec_0003 2929 - 5427 + | DNA gyrase, B subunit TERM 8 5462 - 5450 - g 71 -3.3 -4.86862 | overlap 5451 TCTAAAAAATTAAAA TCACC AAA GGTGG ATAGATCTTCTATTG Pnec_0004 5429 - 5920 + | nuclear protein SET TERM 9 5981 - 6019 + G 87 -11.1 -3.85817 | opp_overlap 5979 5976 CCGCCATTAATTACT GGCGCAGC-CAGTCGCCCT CAG AGGG-GAATGAGTTGCGCC TTTGTGCCGAGGCGT Pnec_0005 5935 - 6150 + | hypothetical protein Pnec_0006 6260 - 7027 + | ABC transporter related Pnec_0007 7024 - 7728 + | ABC transporter related Pnec_0008 7751 - 8977 + | Extracellular ligand-binding receptor TERM 10 9015 - 9051 + G 93 -11.6 -3.73914 | gap 1, opp_overlap 9016, overlap 9016 GAACTTCTTGGAATT ACCCC-TCAAGGGCTGG TAGC CCAGCTCTTGGTGGGGC TTATTAATGGCTCGT TERM 11 9016 - 9050 + G 93 -15.1 -2.83867 | gap 1, opp_overlap 9016, overlap 9015 AACTTCTTGGAATTA CCCC-TCAAGGGCTGG TAGC CCAGCTCTTGGTGGGG CTTATTAATGGCTCG TERM 12 9049 - 9016 - g 73 -10.9 -2.71263 | opp_overlap 9016 9015 AACTTCTTGGAATTA CCCCTCAAGGGCTGG TAGC CCAGCTCTTGGTGGG GCTTATTAATGGCTC TERM 13 9626 - 9648 + G 79 -11.2 -3.38604 | TTTAATGATTTCTTT GGCTTACGCC TAT GGCGTTGGCC TTGCTGGTTTTGCTG TERM 14 9695 - 9726 + G 72 -5.2 -4.63527 | gap 1, opp_overlap 9696 9699, overlap 9700 TATTTTTCAAGTAAA TC-CATTGATGGGGT CCA ACCTCATCATTGTGG TTTTTGCGGTGGTGG TERM 15 9700 - 9720 + G 83 -10.5 -3.75505 | opp_overlap 9699 9696, overlap 9695 TTCAAGTAAATCCAT TGATGGGGT CCA ACCTCATCA TTGTGGTTTTTGCGG Pnec_0009 8994 - 9914 + | inner-membrane translocator TERM 16 10058 - 10070 + G 80 -5.5 -4.91977 | TTTAATTTGCTGCTT GGCTT CAC AGGCC TTTTATCTTTTGGTC Pnec_0010 9917 - 10846 + | inner-membrane translocator TERM 17 10871 - 10896 + F 100 -13.3 -3.64703 | overlap 10874 TTTTATTATTTGGCT TTAGTGCGGCG TACT CGCCGCACTCA TTTAAATAAAAGAGA TERM 18 10874 - 10893 + F 89 -15 -2.94144 | overlap 10871 TATTATTTGGCTTTA GTGCGGCG TACT CGCCGCAC TCATTTAAATAAAAG TERM 19 10940 - 10960 + F 87 -5.3 -5.40474 | TTCAATTTATATTTG GCCACTGCT TTT GGCGATGGC TTTTTTTGCCGGCCT TERM 20 10994 - 11022 + F 71 -4.4 -4.72486 | opp_overlap 11012, overlap 10995 TGATGCGGTGGCTGG CGGCGGTGGCTT AATTC AGGTCCCCGCCC TTTTTGCGCTTTATC Pnec_0012 11799 - 13721 + | glucose inhibited division protein A Pnec_0013 13714 - 14382 + | methyltransferase GidB Pnec_0014 14401 - 15171 + | Cobyrinic acid ac-diamide synthase Pnec_0015 15195 - 16085 + | parB-like partition protein TERM 21 17153 - 17183 + G 73 -4.1 -4.83677 | gap 1 ACAACCGATCTCAAT GCAACGATGGGCAT GTCT ATGTCTGTC-TTGC TTTTGGTTTTCTTTT Pnec_0016 16688 - 17563 + | ATP synthase F0, A subunit Pnec_0017 17608 - 17874 + | ATP synthase F0, C subunit TERM 22 17883 - 17909 + F 74 -10.3 -3.21924 | gap 1, overlap 17881 TAAGTAATTGTTTTG GTGTGGATGACC AAAG GGTCATCCA-AC TGTTCTCAGCAATAC Pnec_0018 17938 - 18408 + | ATP synthase F0, B subunit TERM 23 18533 - 18509 - g 75 -10 -3.62539 | opp_overlap 18507, overlap 18505 GAGCAATTAAACGAA CTGGCACAGC TTGCT GCTTTGCCAG AAGTTGCTGCTTTAT Pnec_0019 18410 - 18946 + | ATP synthase F1, delta subunit Pnec_0020 18992 - 20533 + | ATP synthase F1, alpha subunit Pnec_0021 20551 - 21420 + | ATP synthase F1, gamma subunit Pnec_0022 21476 - 22876 + | ATP synthase F1, beta subunit Pnec_0023 22898 - 23314 + | ATP synthase F1, epsilon subunit Pnec_0024 23399 - 24442 + | uroporphyrinogen decarboxylase TERM 24 25801 - 25789 - gT 89 -2.7 -5.69262 | overlap 25790 25797 TTAGAAAAACAAAAA CCAAA AAG TTTGA TTACCAAAACGCTTG Pnec_0026 27229 - 26780 - | glycine cleavage H-protein Pnec_0025 24709 - 26835 + | primosomal protein N' Pnec_0028 29238 - 28204 - | fatty acid desaturase TERM 25 28244 - 28259 + g 74 -5.4 -4.65916 | gap 1 GGGCTGAGTACAACT CGGACTG AAT CAG-CCG TTTTATTGCCGTCAA TERM 26 28840 - 28830 - G 77 -6.8 -4.51097 | TTAAGTAGTAGAAAA CTGG GCC CCAG CCACTGCGATAAAGG Pnec_0029 29593 - 30084 + | cytochrome c class I TERM 27 30108 - 30124 + T 100 -9.4 -6.04953 | opp_overlap 30108 TGAGCTCAATTAAAA GCTGGC ACATG GCCAGC TTTTTTTATTTCTAT TERM 28 30124 - 30108 - T 86 -9.4 -4.42238 | opp_overlap 30108 TGAGCTCAATTAAAA GCTGGC ACATG GCCAGC TTTTTTTATTTCTAT Pnec_0030 31033 - 30140 - | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase TERM 29 30822 - 30835 + g 76 -2.4 -5.28176 | ATCTCATTGTGTTCG TGCA GAGCCA TGCA TTTTTTGTGAATACC Pnec_0031 31137 - 31739 + | phosphoheptose isomerase Pnec_0032 31774 - 32424 + | transport-associated Pnec_0034 33461 - 32874 - | GCN5-related N-acetyltransferase TERM 30 33630 - 33601 - H 71 -4.5 -4.72373 | CTAAAAAAATAGAAA TTTGAAAAAAAGT TGAA ATTTTTTTCCAAA ACTAAGTCATTGTTT TERM 31 33746 - 33730 - H 71 -2.2 -5.06451 | GACGACCCTAAAAAA GTGGGA TATAG TCTCAC CGCTCTGCTGAATGT TERM 32 35693 - 35677 - H 74 -10.9 -2.62616 | opp_overlap 35671 35667 TCAGCTGGGAGAGCA CCTGCTT TGC AAGCAGG GGGTCGTCGGTTCGA TERM 33 35737 - 35774 + H 72 -5.7 -4.47873 | overlap 35739 CACCAACTTATAAAT GTCAAAGCTAAGCGATT TAAT AATTGGTTAGTTTTGCC TTTTATGGCTGTTCT TERM 34 36487 - 36476 - H 74 -7.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGGA GGGG AGTGAAATAGATCCT TERM 35 39096 - 39121 + H 100 -16.2 -4.93365 | opp_overlap 39091 CGGGCACCAATGCGA CGCCCAGACC CTTTTA GGTCTGGGCG TTTTTACTTGTGCAA TERM 36 39439 - 39451 + H 76 -7.7 -4.23652 | CAGTTCGATCCTGCC CATGG GCA CCATG TTTGATTTATTAATT TERM 37 39550 - 39527 - g 85 -3.7 -5.46706 | overlap 39529 ATGGCAAAAGAAAAA TTCGAGCGG ACAAAA CCGCACGTA AACGTAGGCACCATC TERM 38 39666 - 39647 - g 72 -5.8 -4.4078 | gap 1 GGTGGCGAAGCAAAA GCATACGAT CAG ATCG-ATGC TGCTCCAGAAGAAAA Pnec_0035 39512 - 40702 + | translation elongation factor Tu Pnec_0036 40812 - 41189 + | preprotein translocase, SecE subunit TERM 39 41405 - 41395 - g 72 -5.4 -4.39002 | AAATCCGGCACAAAA TCAG TTT CTGA GCGTCGTTTCTTCCC Pnec_0037 41197 - 41769 + | NusG antitermination factor TERM 40 41786 - 41776 - f 77 -6.8 -4.47118 | opp_overlap 41775 AAGACGTAAAAACAA GGAC TTA GTCC AGTTTTGCAGTGCAG TERM 41 42292 - 42279 - g 72 -3.1 -4.98531 | TCGCTAAAGCAAAAA TGCCA GACT TGACA GCAGCCGATATGGAT Pnec_0038 41939 - 42370 + | ribosomal protein L11 Pnec_0039 42373 - 43074 + | ribosomal protein L1 TERM 42 43275 - 43292 + F 91 -9.9 -4.84359 | ACGCTGGTGTGTACC CCAACTG GAAA CAGTTGG TTTTTATGGAGCTAA Pnec_0040 43311 - 43850 + | ribosomal protein L10 Pnec_0041 43887 - 44264 + | ribosomal protein L7/L12 TERM 43 44308 - 44337 + F 100 -12.3 -4.17789 | opp_overlap 44333, overlap 44311 44327 GGGGCGTTAGCCATG TTGGGTTTGACCT CTAG AGGTCAAACCTGA TTTCATTTCTGATTG TERM 44 44311 - 44334 + F 87 -14 -3.09117 | opp_overlap 44333, overlap 44308 44327 GCGTTAGCCATGTTG GGTTTGACCT CTAG AGGTCAAACC TGATTTCATTTCTGA TERM 45 44327 - 44366 + F 93 -11.6 -4.26076 | opp_overlap 44333, overlap 44311 44308 GTTTGACCTCTAGAG GTCAAACCTGATTTCATT TCTG ATTGAAATCGGGTTTGCC TTTTGATACGACTGC TERM 46 44402 - 44424 + F 71 -9.2 -3.2963 | GCAAGTTTGGTCGGA CACTAGATCG AAA CGGTTTAGTG TTGTCCGCCAGTGAT TERM 47 44700 - 44716 + G 70 -9.5 -3.07233 | opp_overlap 44692 44693, overlap 44702 CTAACAACGGCTATG CACGTAT GGA ATACGTG TCTTACCAGTTATCA Pnec_0042 44492 - 48592 + | DNA-directed RNA polymerase, beta subunit TERM 48 49437 - 49447 + G 74 -6.8 -4.20918 | opp_overlap 49437 49436 ATTAACCGTAATAAC CGCT TGA AGCG TTTGTTAGAGTTGCG TERM 49 50311 - 50289 - g 85 -6.2 -5.24531 | opp_overlap 50295 ATCGTGGACAAAAAA GCAGAAGGCG ATG CGCGTTTTGC TGGGAAGACCAAGAT Pnec_0043 48594 - 52856 + | DNA-directed RNA polymerase, beta' subunit TERM 50 52867 - 52884 + F 100 -11.3 -5.07107 | opp_overlap 52878 GCTAATTTGGTAATT CTGGCCA GAAA TGGCCAG TTTTTTCCCCATTTG Pnec_0044 52877 - 52981 + | hypothetical protein Pnec_0045 53034 - 53414 + | ribosomal protein S12 Pnec_0046 53576 - 54046 + | ribosomal protein S7 TERM 51 54838 - 54824 - g 89 -6.4 -5.40004 | opp_overlap 54827, overlap 54827 54828 GAGGAAATCAAAAAA GCATTG CGT CAACGC ACTATTGCTAACGAA Pnec_0047 54074 - 56176 + | translation elongation factor G TERM 52 56260 - 56237 - g 85 -3.7 -5.46706 | overlap 56239 ATGGCAAAAGAAAAA TTCGAGCGG ACAAAA CCGCACGTA AACGTAGGCACCATC TERM 53 56376 - 56357 - g 72 -5.8 -4.4078 | gap 1 GGTGGCGAAGCAAAA GCATACGAT CAG ATCG-ATGC TGCTCCAGAAGAAAA Pnec_0048 56222 - 57412 + | translation elongation factor Tu TERM 54 57445 - 57482 + F 75 -8.5 -3.74077 | gap 1, opp_overlap 57433, overlap 57447 57448 TATTTAGCGGTTTGC TAAC-CGGTGACATCAGT GCT GCTGATGTCACCGAGCTC TTTAGATGTATAACG TERM 55 57447 - 57480 + F 81 -11.1 -3.45231 | gap 1, overlap 57445 57448 TTTAGCGGTTTGCTA AC-CGGTGACATCAGT GCT GCTGATGTCACCGAGC TCTTTAGATGTATAA TERM 56 57448 - 57479 + F 89 -14.6 -2.66656 | gap 1, overlap 57447 57445 TTAGCGGTTTGCTAA C-CGGTGACATCAGT GCT GCTGATGTCACCGAG CTCTTTAGATGTATA Pnec_0049 57529 - 57840 + | ribosomal protein S10 TERM 57 57850 - 57877 + F 100 -12 -4.62336 | overlap 57851 CAGTAATTTGTTGTT TCCAGTCTCGGC ACTT GCCAAGACTGGG TTTTTGGGGTAGAAT TERM 58 57851 - 57876 + F 95 -13.3 -3.3692 | overlap 57850 AGTAATTTGTTGTTT CCAGTCTCGGC ACTT GCCAAGACTGG GTTTTTGGGGTAGAA TERM 59 57900 - 57922 + F 76 -7.8 -4.24338 | GGTAGAATTTAAGGC TCTGCTGAGT AAA ATTTAGCAGA TTTTAAGGTATTTTT Pnec_0050 58039 - 58695 + | ribosomal protein L3 Pnec_0051 58707 - 59327 + | ribosomal protein L4/L1e Pnec_0052 59324 - 59638 + | Ribosomal protein L25/L23 TERM 60 59679 - 59662 - g 74 -5.5 -4.70583 | opp_overlap 59663, overlap 59663 TTGATGAAGACAAAA CCGACCT CACC AGGTCGT CGTTCAATGGTCAAG TERM 61 59678 - 59663 - g 70 -9 -3.41627 | opp_overlap 59663, overlap 59662 TGATGAAGACAAAAC CGACCT CACC AGGTCG TCGTTCAATGGTCAA Pnec_0053 59641 - 60471 + | ribosomal protein L2 Pnec_0054 60491 - 60769 + | ribosomal protein S19 TERM 62 60833 - 60849 + G 73 -9.5 -3.32769 | TGCGCAAAAGACTCG TTTGGTC GCC GACCAAA TTCGTGGTTTGCCGA Pnec_0055 60774 - 61109 + | ribosomal protein L22 TERM 63 61817 - 61794 - g 83 -4.6 -5.27476 | gap 1, overlap 61796 61813 61815 CCGAAGAAAAGAAAA CTCGTCGTGCT CCA AGCAAGAC-AG CTGCTCGCAAACCAG Pnec_0056 61118 - 61933 + | ribosomal protein S3 Pnec_0057 61936 - 62349 + | ribosomal protein L16 Pnec_0058 62364 - 62558 + | ribosomal protein L29 Pnec_0059 62571 - 62840 + | ribosomal protein S17 TERM 64 62849 - 62883 + F 76 -8.1 -4.21194 | gap 2, opp_overlap 62848 62851, overlap 62851 TATTTAAAGAAATAT TAGGGATTTTGGTGAAG TTT CTTC-CCAAA-TCCCTG TTTTACGTAGTAGAA TERM 65 62851 - 62881 + F 72 -8.5 -3.70674 | gap 2, opp_overlap 62851 62848, overlap 62849 TTTAAAGAAATATTA GGGATTTTGGTGAAG TTT CTTC-CCAAA-TCCC TGTTTTACGTAGTAG Pnec_0060 63024 - 63392 + | ribosomal protein L14 Pnec_0061 63402 - 63710 + | ribosomal protein L24 Pnec_0062 63727 - 64269 + | ribosomal protein L5 Pnec_0063 64279 - 64584 + | ribosomal protein S14 Pnec_0064 64609 - 65004 + | ribosomal protein S8 Pnec_0065 65015 - 65548 + | ribosomal protein L6 Pnec_0066 65562 - 65915 + | ribosomal protein L18 TERM 66 66219 - 66229 + G 84 -8.2 -4.61873 | TACTGGTCAACATGG CGCG TCA CGCG TTTTGATTTCTCCAG Pnec_0067 65941 - 66450 + | ribosomal protein S5 Pnec_0068 66475 - 66663 + | ribosomal protein L30 Pnec_0069 66691 - 67131 + | ribosomal protein L15 Pnec_0070 67149 - 68486 + | preprotein translocase, SecY subunit TERM 67 68629 - 68609 - g 87 -10.5 -4.19258 | opp_overlap 68609 ACATTTCAGGCAAAA TACGGATGC ATT ACATCCGTA TTTTGCCGGGAGACA TERM 68 68609 - 68629 + G 83 -9.8 -4.07568 | opp_overlap 68609 ACATTTCAGGCAAAA TACGGATG CATTA CATCCGTA TTTTGCCGGGAGACA Pnec_0071 68491 - 68709 + | translation initiation factor IF-1 Pnec_0072 68744 - 68860 + | ribosomal protein L36 Pnec_0073 68885 - 69250 + | ribosomal protein S13 Pnec_0074 69269 - 69676 + | ribosomal protein S11 TERM 69 69832 - 69848 + G 75 -6.5 -4.40561 | AGGCCAAATTAGCAC GTCGGGA AGG TACCGAC TTATTTTTAAAGAGC Pnec_0075 69795 - 70418 + | ribosomal protein S4 TERM 70 71061 - 71079 + G 71 -9.6 -3.14344 | GAAACTAACGGTGTT TTGTCTCC TGA GGAGGCAA TTCGTCAAGCAGCTA TERM 71 71407 - 71395 - g 76 -9.1 -3.73107 | GCATGAAACTCGAAA GCTGG CCT CCAGC TAACCTCGAGAAATA Pnec_0076 70443 - 71423 + | DNA-directed RNA polymerase, alpha subunit TERM 72 71629 - 71611 - g 76 -4.6 -5.00884 | overlap 71620 ACCTTGGGTAAAAAA GACAACTT AGC AAATCGTC GCTTGGCATTTAATC Pnec_0077 71440 - 71835 + | ribosomal protein L17 TERM 73 71850 - 71881 + F 73 -10.2 -3.01869 | opp_overlap 71857, overlap 71857 AGTCTCACGGTTACA GTAGAAAGCCAGGC TTCG GTCTGGCTTTTTTC ATTTATCGGTTTATA TERM 74 71857 - 71874 + F 100 -9.1 -5.42514 | opp_overlap 71857, overlap 71850 CGGTTACAGTAGAAA GCCAGGC TTCG GTCTGGC TTTTTTCATTTATCG TERM 75 71874 - 71857 - f 70 -6.9 -4.0162 | opp_overlap 71857 71850 CGGTTACAGTAGAAA GCCAGGC TTCG GTCTGGC TTTTTTCATTTATCG Pnec_0078 71905 - 72255 + | CutA1 divalent ion tolerance protein Pnec_0079 72252 - 73925 + | Protein-disulfide reductase Pnec_0080 74962 - 73934 - | Porphobilinogen synthase Pnec_0081 75611 - 74946 - | GTP-binding protein HSR1-related TERM 76 75007 - 75025 + g 71 -10.3 -2.69489 | overlap 75004 TTAATAACAGTATTG TCGGCCT CTTCC AGGCCGA TGCGTTTGGTGCTTG TERM 77 75453 - 75466 + g 73 -2.3 -5.26875 | overlap 75451 ACCAGGCGTTTTACT GGCAA AAGC TAGCC TTTTTTGGTTGCAAA Pnec_0082 75725 - 76441 + | cytochrome c class I TERM 78 76489 - 76459 - T 75 -9.9 -3.53343 | opp_overlap 76459 76446 76466, overlap 76466 AAGTTTTGGTCGAAA TAAAAAACTCGCT CATGT AGCGGGTTTTTTA TTGCCTAAAAACTTA TERM 79 76459 - 76489 + T 81 -12.1 -3.06133 | opp_overlap 76459 76466, overlap 76446 76466 AAGTTTTGGTCGAAA TAAAAAACTCGCT CATGT AGCGGGTTTTTTA TTGCCTAAAAACTTA TERM 80 76466 - 76482 + T 93 -5.8 -5.4833 | opp_overlap 76459 76466, overlap 76459 76446 GGTCGAAATAAAAAA CTCGCT CATGT AGCGGG TTTTTTATTGCCTAA TERM 81 76482 - 76466 - T 95 -3.6 -5.63517 | opp_overlap 76466 76459 76446, overlap 76459 GGTCGAAATAAAAAA CTCGCT CATGT AGCGGG TTTTTTATTGCCTAA Pnec_0083 77837 - 76539 - | diaminopimelate decarboxylase Pnec_0084 78075 - 78452 + | iron donor protein CyaY Pnec_0085 79534 - 78449 - | 3-dehydroquinate synthase Pnec_0086 80025 - 79540 - | Shikimate kinase Pnec_0087 80707 - 80078 - | type II and III secretion system protein TERM 82 81889 - 81907 + G 71 -9.6 -3.1634 | opp_overlap 81888 81886 81885 GTTAAAAGACATCAC CATTGCTG AGT CGGCAATG TTGGCTGGTTTGCCA TERM 83 82508 - 82523 + G 79 -10.4 -3.50393 | overlap 82518 AAACGGTTGAGTCCT GGCGCA GTTG TGCGCC TTCTGTCAGATGGCG TERM 84 82827 - 82816 - g 72 -3 -5.08824 | CTGGGAGCCAAAAAA TTAC TACG GTAA ATATGACGGCATGAT Pnec_0088 81203 - 83539 + | penicillin-binding protein, 1A family TERM 85 83527 - 83543 + F 82 -7.3 -4.62069 | TAATGGTGGCGTGCG CGAACTG CAA TAGTTCG TTTTTGACATGGCAC TERM 86 83600 - 83627 + F 83 -2.6 -5.52384 | overlap 83601 CAAGCTATGCATGTA ATGGTTCGCGGT AACA ATCGCGAGACAC TTTTTTTAGTGACGA TERM 87 83833 - 83882 + F 73 -4.9 -4.63089 | CAACAGCATCGCCGC TCCGGAACAATTTGGGAGGGGAG GTAT CGCTCGTCCTTAATTGATCCAGA TTATTTTTTGCGATG TERM 88 86589 - 86569 - f 82 -9 -4.25283 | opp_overlap 86568 86569, overlap 86582 ACCTCGCTATGAAAA CCTTGGCC GAAAT GGCCAAAG GCTTATCTGGTGATT TERM 89 90615 - 90641 + G 75 -6.6 -4.38171 | opp_overlap 90603, overlap 90609 CAAGCAGCAGGCGAA GTTGTCGTCT CAATTAA AGACGTCAAC TTTTCCTATGCTCTA Pnec_0095 90561 - 91412 + | ABC transporter related TERM 90 91877 - 91898 + G 88 -8.7 -4.79223 | TGGGCGGGCATTATT TCGATGCCA ATCC TGGCAACGA TTTTTACTGCTGTAG Pnec_0096 91412 - 92200 + | protein of unknown function DUF140 Pnec_0097 92222 - 92704 + | Mammalian cell entry related domain protein Pnec_0098 92704 - 93453 + | VacJ family lipoprotein TERM 91 94152 - 94139 - g 72 -6.7 -4.21438 | overlap 94140 GACCGCAACAAACAA TTGGC TAGC GCCAA GCCAGGCAACTAATC Pnec_0099 93524 - 94165 + | toluene tolerance family protein Pnec_0100 94184 - 94441 + | sulfate transporter/antisigma-factor antagonist STAS TERM 92 95416 - 95455 + F 82 -10.3 -4.09321 | gap 1, overlap 95421 TCCTGGCTTGGTCAT GATG-AGTGTTTTGCAAA ACGCC TTTGCAAAACACTTCCTC TTCTTTAATTCAGTC TERM 93 95421 - 95449 + F 100 -13.4 -3.51158 | overlap 95416 GCTTGGTCATGATGA GTGTTTTGCAAA ACGCC TTTGCAAAACAC TTCCTCTTCTTTAAT TERM 94 95627 - 95637 + F 72 -5.4 -4.50358 | opp_overlap 95627 CCCTACGCTCGAATA TCCA TTA TGGA TTTTGGTATTTGCAT TERM 95 95854 - 95864 + F 74 -3.2 -5.08169 | ATATGATTGATGGGT TCCG CTA TGGA TTTTTTGGAGTATCT Pnec_0103 96016 - 96255 + | BolA family protein TERM 96 96350 - 96365 + G 72 -9 -3.54029 | ATGGTTGGCGGAACC CCTCTC AAAG GAGAGG TTGTGATTGCTGGCG Pnec_0104 96320 - 97594 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Pnec_0105 97615 - 98241 + | ATP phosphoribosyltransferase Pnec_0106 98269 - 99591 + | Histidinol dehydrogenase TERM 97 99612 - 99588 - f 72 -8.7 -3.61715 | GATGCGCCTTAAGAA GTAAGTTCAAA ACG CTCGAACTTAC TAAATAAATTAACTC TERM 98 99643 - 99661 + F 95 -11.7 -4.24711 | opp_overlap 99643 AGTATTTCTTTTAAA GCGGCGA CGAGT TCGCCGC TTTGTTCAAATTTTC TERM 99 99661 - 99643 - f 88 -11.7 -3.5393 | opp_overlap 99643 AGTATTTCTTTTAAA GCGGCGA CGAGT TCGCCGC TTTGTTCAAATTTTC Pnec_0108 100398 - 100985 + | Imidazoleglycerol-phosphate dehydratase TERM 100 101364 - 101378 + G 72 -4.9 -4.56914 | TTTGGGCTTAATTCC CGGTG AGGTA CGCCG TTTTAATTTGGCTGG Pnec_0109 101035 - 101691 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Pnec_0110 101707 - 102468 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Pnec_0111 102468 - 103226 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 101 103613 - 103625 + G 77 -3.3 -5.26316 | TGCTTGCCACACAGG GGAGC ATA GCTGC TTTTTTCTGCAATGG Pnec_0112 103266 - 103688 + | Phosphoribosyl-AMP cyclohydrolase Pnec_0113 103727 - 104128 + | phosphoribosyl-ATP diphosphatase Pnec_0114 104164 - 104520 + | histidine triad (HIT) protein TERM 102 104533 - 104518 - f 70 -2.6 -5.00616 | CGCCCCTGGAAAAAA TAATCC AAGG AGATTA AAGATGGGTTCATTT Pnec_0115 104537 - 104758 + | twin-arginine translocation protein, TatA/E family subunit Pnec_0116 104804 - 105280 + | twin-arginine translocation protein, TatB subunit Pnec_0117 105316 - 106107 + | Sec-independent protein translocase, TatC subunit Pnec_0118 107546 - 106083 - | Sel1 domain protein repeat-containing protein TERM 103 106169 - 106159 - G 72 -8.2 -3.70546 | opp_overlap 106159 106155 CGATCAAAACGATAA CGCC TTT GGCG TAAGTTGCCTTCCAG TERM 104 107052 - 107071 + g 72 -2.9 -5.08824 | overlap 107054 GCTGTCAGCAAGTTC TTGCAAA TACTGT TTTGCGA TTTTTTGAATGCCCG TERM 105 107468 - 107478 + g 78 -5.4 -4.77165 | overlap 107464 CCCCAGTTAGGTAGG CTTG AGC CAAG TTTTGTTGTGCAGAA Pnec_0119 107756 - 109000 + | porin Gram-negative type TERM 106 108997 - 109031 + F 77 -10.3 -3.4285 | gap 1, opp_overlap 109006, overlap 109001 CGTACGTCACACTTT CTAATTTAACGCTAGC GTAA GCTAGC-TTGAATTAG TTGTAGATTGGGTAG TERM 107 109080 - 109051 - f 85 -10.7 -3.73402 | opp_overlap 109055, overlap 109055 AGATTGGGTAGCAAA TCAACCCACCGTG TTTA CACGGTGGGTTTT TTCTTTTGTAGTCTC TERM 108 109055 - 109076 + F 100 -15.9 -5.86976 | opp_overlap 109051 109055 TGGGTAGCAAATCAA CCCACCGTG TTTA CACGGTGGG TTTTTTCTTTTGTAG TERM 109 109076 - 109055 - f 100 -15.9 -3.56704 | opp_overlap 109055, overlap 109051 TGGGTAGCAAATCAA CCCACCGTG TTTA CACGGTGGG TTTTTTCTTTTGTAG Pnec_0120 109132 - 109485 + | TPR repeat-containing protein TERM 110 111086 - 111074 - f 74 -7.7 -4.13995 | opp_overlap 111073 CTGCGAGAAATTAAA TCTCG TCT CGAGA ATACTTTACAAGTTG Pnec_0124 112283 - 112474 + | hypothetical protein TERM 111 114133 - 114168 + G 93 -10.7 -4.66833 | gap 1, opp_overlap 114128 114144, overlap 114138 TTTATAAAAGCACCT TAGATGGAGAAGTAGT TGACC ACTGCTTCTCC-TCTA TTTTTGGGCTTGGCC TERM 112 114138 - 114164 + G 86 -11.7 -3.55528 | opp_overlap 114144, overlap 114133 AAAAGCACCTTAGAT GGAGAAGTAGT TGACC ACTGCTTCTCC TCTATTTTTGGGCTT Pnec_0127 114096 - 114263 + | polar amino acid ABC transporter, inner membrane subunit Pnec_0129 114897 - 115046 + | hypothetical protein Pnec_0130 115086 - 115562 + | polar amino acid ABC transporter, inner membrane subunit TERM 113 115831 - 115853 + T 77 -9.2 -3.8046 | CTCAGTTGCGCGCTC GCGTTGGAAT GGT ATTCCAACAC TTTGAACTTTTTCCA Pnec_0133 117532 - 116354 - | 2-alkenal reductase Pnec_0134 117975 - 117553 - | large conductance mechanosensitive channel protein TERM 114 118169 - 118199 + G 89 -8.9 -4.70046 | gap 1, overlap 118159 GTTGATCGCCACTTC GGCGGTTGGTGGCG TAGG CGCCGCC-GCAGCC TTTTATCCTTTTGTA Pnec_0135 118113 - 118715 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Pnec_0136 118726 - 120126 + | Cytochrome b/b6 domain TERM 115 120156 - 120146 - f 70 -5.4 -4.3851 | GACACCAAAGAGAAA CTAG GAA CTAG TATGAAACGAATTCT Pnec_0137 120158 - 120931 + | cytochrome c1 TERM 116 120960 - 120945 - f 70 -9 -3.19425 | opp_overlap 120945, overlap 120936 AATTAAGTTGAGTAA GCCCTA CTTG TAGGGC TTACTAGTGATGAGA TERM 117 120945 - 120960 + F 70 -9 -3.23216 | opp_overlap 120945 120936 AATTAAGTTGAGTAA GCCCTA CTTG TAGGGC TTACTAGTGATGAGA TERM 118 121245 - 121224 - g 79 -10.3 -3.56844 | opp_overlap 121223 121222 121222, overlap 121222 TGTATGAATCAAACA TCATCAATG AATA CATTGATGA GCGTTTTCCTCATCC TERM 119 121430 - 121397 - g 73 -4.6 -4.73388 | gap 1, opp_overlap 121406, overlap 121398 121399 121429 AAGGTTCATGAAAAA GC-GCGTTTAGCGAT TCGTG ATCGCTTAACTCAGC TTGCACCAATTTTTG Pnec_0138 121031 - 121642 + | Glutathione S-transferase domain TERM 120 121733 - 121706 - g 70 -9.8 -3.09234 | opp_overlap 121706 ACAAACCCTACCTAA TCCGTGCCCTAC ATCA GTGGTGCACGGA TTTTGGTTTTACGCC TERM 121 121706 - 121733 + G 100 -12 -4.67038 | opp_overlap 121706 ACAAACCCTACCTAA TCCGTGCCCTAC ATCA GTGGTGCACGGA TTTTGGTTTTACGCC TERM 122 121927 - 121968 + G 70 -8.9 -3.43919 | gap 1, overlap 121923 121925 ATGGTTCCCGTTAGC CATGTCTTGGCTATTTATGC CAG GGA-AAATGGCCAGGGCATG TCTTTCCCATTTGAC TERM 123 122064 - 122048 - g 77 -3.7 -5.2197 | CAGAAAAACCAAAAA CAAGC AGACCTA GCTTG AGGATTGTGAAATAG Pnec_0139 121672 - 122079 + | Stringent starvation protein B Pnec_0140 122244 - 122435 + | hypothetical protein TERM 124 123244 - 123259 + G 70 -9 -3.32698 | opp_overlap 123244, overlap 123242 TACTTCATGCATCAA CCAACC TAAA GGTTGG TATTGTGTGGAGTGG Pnec_0141 122463 - 123779 + | TPR repeat-containing protein Pnec_0142 123843 - 124919 + | hypothetical protein TERM 125 124997 - 124984 - T 75 -4.5 -5.00851 | AGCAAGTAAAGAAAA GCAAC AACG GCTGC AATTGCTAGAAAGAT TERM 126 127077 - 127112 + T 100 -13.4 -4.22927 | opp_overlap 127082, overlap 127082 AGTTAGTCCTCAAGA AAAAACCCCGCTTAGT GAAA ACTGGGCGGGGTTTTA TTTATCTGTTACTCA TERM 127 127107 - 127082 - T 100 -8.9 -5.4505 | opp_overlap 127082 127077 GTCCTCAAGAAAAAA CCCCGCTTAGT GAAA ACTGGGCGGGG TTTTATTTATCTGTT TERM 128 127082 - 127107 + T 100 -13.3 -5.08878 | opp_overlap 127082, overlap 127077 GTCCTCAAGAAAAAA CCCCGCTTAGT GAAA ACTGGGCGGGG TTTTATTTATCTGTT Pnec_0145 128383 - 127121 - | protein of unknown function DUF195 Pnec_0146 128706 - 128398 - | glutaredoxin-like protein Pnec_0147 129644 - 128802 - | protein-(glutamine-N5) methyltransferase, release factor-specific Pnec_0148 130728 - 129649 - | peptide chain release factor 1 Pnec_0149 132078 - 130729 - | glutamyl-tRNA reductase TERM 129 131845 - 131829 - G 73 -7.9 -4.18494 | opp_overlap 131829 TAGCCTCATGTAAAA TGCCTGC AGC GCTGGCA TCGTTAGCGGCGCAA Pnec_0150 132090 - 132344 + | hypothetical protein Pnec_0151 133106 - 132333 - | Uracil-DNA glycosylase superfamily TERM 130 132977 - 132954 - G 72 -3 -5.0133 | overlap 132955 GAGGGCTTTAAAAAA GTGCCGAGGC TCAG GCCTCACAAC ACTAGCATCCAGATC Pnec_0152 134894 - 133113 - | peptidase M61 domain protein TERM 131 134299 - 134313 + g 71 -7.1 -4.08317 | CCCTGAATAGCCATG CGGTG GGCTA CACCG TTTGATTTCCAGTTC TERM 132 134770 - 134752 - G 73 -8 -4.0825 | TCCCGAATTAAATAA CTGCCCGG CAT CCAGGCTG GCACTTGCAGTATCT Pnec_0153 135616 - 134900 - | putative thiol:disulfide interchange protein TERM 133 135197 - 135208 + g 73 -4.4 -4.84017 | TATGACGTTCTCTAA TTGC TGTA GCAA TTTTTCTAAGCGCTT TERM 134 135269 - 135253 - G 73 -2.2 -5.24129 | TGGGGTCAGAAAAAA CAGCCA GCTGA CGACTG CCATTGCCGCGCACG Pnec_0154 136883 - 135609 - | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Pnec_0155 136924 - 138018 + | GTP-binding protein YchF TERM 135 138039 - 138062 + T 72 -8.2 -3.87815 | opp_overlap 138044, overlap 138044 TATGTTTGCCAAATA AAAAAGCCCT GAAA AGGGCTTTTG TTTATGCAGCTAAAG TERM 136 138044 - 138057 + T 87 -8.1 -4.99043 | opp_overlap 138044, overlap 138039 TTGCCAAATAAAAAA GCCCT GAAA AGGGC TTTTGTTTATGCAGC TERM 137 138057 - 138044 - T 100 -8.1 -5.63517 | opp_overlap 138039 138044 TTGCCAAATAAAAAA GCCCT GAAA AGGGC TTTTGTTTATGCAGC Pnec_0156 138202 - 138092 - | hypothetical protein Pnec_0157 138443 - 138186 - | hypothetical protein TERM 138 138506 - 138537 + H 70 -9.1 -3.19642 | opp_overlap 138529 ATTCTCTAACCTCAA TTTTATTAATTGA CGCGCA TCAATTAATAAAA TTAATCCATACTGAT Pnec_0158 138557 - 138805 + | hypothetical protein Pnec_0159 139911 - 139108 - | Indole-3-glycerol-phosphate synthase TERM 139 139726 - 139753 + g 100 -7.7 -5.47821 | CTTCTTAATTTCAGT GATCACTGCAG CTTTTC CGGCGGTGATC TTTTTTTCAATGGCT Pnec_0160 140947 - 139922 - | anthranilate phosphoribosyltransferase TERM 140 140308 - 140287 - G 76 -8.1 -4.06419 | gap 1, opp_overlap 140287 140272 CGCGTCCATAAACAA CTAGGGCATG TTC CAT-CCCTAG TGCTTGCAAGACGCG Pnec_0161 141534 - 140968 - | glutamine amidotransferase of anthranilate synthase Pnec_0162 143023 - 141518 - | anthranilate synthase component I Pnec_0163 143748 - 143023 - | Ribulose-phosphate 3-epimerase Pnec_0164 143780 - 144172 + | ApaG domain protein TERM 141 144179 - 144191 + F 70 -6.3 -4.23298 | opp_overlap 144178 CTTCATTAAAAGAGG GTCTT AGA AAGAC TATTTTTTCCCTTTG Pnec_0165 144303 - 145433 + | MltA domain protein Pnec_0166 145485 - 146234 + | Enoyl-CoA hydratase/isomerase Pnec_0168 148180 - 146945 - | 8-amino-7-oxononanoate synthase TERM 142 147685 - 147705 + g 74 -8.3 -3.88291 | opp_overlap 147686 147689, overlap 147686 CTTGTGTATGGTCAA ACAAGGCAA CGT TTGCCTTGG TTTGTGCAGCTGCTA TERM 143 147686 - 147704 + g 77 -11.8 -2.92653 | opp_overlap 147686 147689, overlap 147685 TTGTGTATGGTCAAA CAAGGCAA CGT TTGCCTTG GTTTGTGCAGCTGCT TERM 144 147704 - 147686 - G 86 -11.8 -3.57144 | opp_overlap 147685 147686, overlap 147689 TTGTGTATGGTCAAA CAAGGCAA CGT TTGCCTTG GTTTGTGCAGCTGCT TERM 145 147701 - 147689 - G 71 -7.7 -3.92542 | opp_overlap 147686 147685, overlap 147686 TGTATGGTCAAACAA GGCAA CGT TTGCC TTGGTTTGTGCAGCT TERM 146 148692 - 148674 - H 74 -5.9 -4.61231 | opp_overlap 148674, overlap 148676 GGAGAGTGTTAAAAA GTCTGGC CAGAT GCCAGCC TGTTCACAGGCGAAG Pnec_0171 150608 - 151237 + | putative ubiquinone biosynthesis protein TERM 147 151302 - 151322 + F 74 -9.9 -3.38314 | overlap 151299 ATATTTTTCGGGTAT TACTGTATT TTA AATACAGTA TATTTAGGGATTGCC Pnec_0173 151978 - 152928 + | S-adenosyl-methyltransferase MraW Pnec_0174 152925 - 153191 + | cell division protein FtsL Pnec_0175 153188 - 154960 + | Peptidoglycan glycosyltransferase TERM 148 155041 - 155070 + G 100 -10.9 -5.08824 | gap 1, overlap 155046 GCAAAAGTGTGTGCG GATAGTCGCCAGAT TCA GTCTGGCGA-TATC TTTTTTGCCTACCCG TERM 149 155046 - 155066 + G 93 -11.9 -3.67773 | overlap 155041 AGTGTGTGCGGATAG TCGCCAGAT TCA GTCTGGCGA TATCTTTTTTGCCTA Pnec_0176 154957 - 156507 + | UDP-N-acetylmuramyl-tripeptide synthetase Pnec_0177 156507 - 157955 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase TERM 150 158966 - 158984 + G 73 -7.4 -4.11216 | opp_overlap 158966 GTCACTAAAAAACAT TTCGGCGA GGG TCGTCGGA TTTTCAGGATGGCGC Pnec_0178 157946 - 159115 + | phospho-N-acetylmuramoyl-pentapeptide-transferase Pnec_0179 159129 - 160751 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase Pnec_0180 160748 - 162019 + | cell division protein FtsW TERM 151 162411 - 162427 + G 71 -9.5 -3.26319 | GGCTGGTAGCGCTAA TCTTGCT CTC AGCAAGA TTGCTATGCGCACTT TERM 152 162934 - 162964 + G 73 -11.3 -2.71681 | GTGTTGCTACCGCAG CCATTGCCAAATC CGCAA GATTTGGCAATGA TGATTCGAAACCTTA Pnec_0181 162040 - 163089 + | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 153 164483 - 164515 + G 72 -9.1 -3.51034 | overlap 164481 TGCAGGTTCAATTTT TGCTTTGCCACATAC GTT GTCGGAGGCAAAGCA TGTTTAATGTCGGTG Pnec_0182 163086 - 164522 + | UDP-N-acetylmuramate--alanine ligase Pnec_0183 164515 - 165528 + | D-alanine--D-alanine ligase Pnec_0184 165525 - 166400 + | Polypeptide-transport-associated domain protein FtsQ-type Pnec_0185 166393 - 167622 + | cell division protein FtsA Pnec_0186 167672 - 169012 + | cell division protein FtsZ Pnec_0187 169125 - 169625 + | Redoxin domain protein TERM 154 169959 - 169995 + G 83 -2.4 -5.67529 | gap 2 AATCGAGCTTGATGG TGAAGAAGTGC--CCATC ATG GATGGTAGTGCTGCTTCA TTTTTGTTTTTGATT TERM 155 170362 - 170350 - g 71 -7.7 -3.89957 | opp_overlap 170349, overlap 170343 TTGAATAACGAAGAA CTTCG TTA CGAAG ATGAATTTGTGCGTC TERM 156 170550 - 170538 - g 79 -9.1 -4.17048 | opp_overlap 170536 170538 CTTTGCGGAAAATAA GGCTC CAG GAGCC TATTCTCAAGAAAGT Pnec_0188 169669 - 170583 + | UDP-3-0-acyl N-acetylglucosamine deacetylase Pnec_0189 171104 - 170616 - | hypothetical protein TERM 157 170906 - 170894 - G 85 -3.3 -5.58074 | CAACTAGCAAAAAAA GCTCA TCT TGCGC TCCAGAACGCCATCC TERM 158 171189 - 171207 + G 73 -10.2 -3.02829 | CTTAAAACCCTGGTC GGCAGTCG AAA CGACCGCC TCTTAAAACAGTATC Pnec_0190 171159 - 173924 + | preprotein translocase, SecA subunit TERM 159 173953 - 173968 + F 100 -11.8 -4.68655 | opp_overlap 173952 CAGGCATGATTCAAT GGGGGC TTTA GCCCCC TTTCTTTTACCCTTA Pnec_0192 176110 - 177366 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 160 177396 - 177414 + F 70 -9.6 -2.95091 | AATTACTTTGAAGTT GTTTGCCA GCT TGGCAAGC TATCTACCTTCCAAT Pnec_0194 177680 - 177952 + | hypothetical protein TERM 161 178562 - 178586 + G 73 -7.9 -4.15222 | TGCCGGCATGATTCA TCCAAATATGG CGA CCATGCTTGGA TTTATTGCGACCGAT Pnec_0195 177990 - 179225 + | arginine biosynthesis bifunctional protein ArgJ Pnec_0197 179909 - 180322 + | NUDIX hydrolase Pnec_0198 181071 - 180319 - | protein of unknown function DUF1342 TERM 162 180348 - 180372 + g 81 -3.5 -5.27923 | GGGTTAGCTTGAATG GCACGTCTG CATTTAC CAGCTGTGC TTTTTTATCGCGTTC Pnec_0199 181697 - 181083 - | dephospho-CoA kinase TERM 163 181701 - 181712 + r 72 -7.2 -4.14739 | opp_overlap 181691 181700 181701 AGTAAGGCCCACAAG GGGC AGTT GCCC TTTTAAGATGCCTAA Pnec_0200 182224 - 181724 - | peptidase A24A prepilin type IV TERM 164 182020 - 182008 - G 72 -5.5 -4.46854 | overlap 182016 182017 AGAGAAAATTTAAAA GCCAA AGA CTGGC ATAGCCAAGAATAGC Pnec_0201 183066 - 182224 - | type II secretion system protein Pnec_0202 184079 - 183480 - | type II secretion system protein E Pnec_0203 185536 - 184247 - | protein of unknown function DUF21 Pnec_0204 185655 - 186167 + | methylated-DNA--protein-cysteine methyltransferase TERM 165 186158 - 186170 + T 73 -6.3 -4.41348 | opp_overlap 186157, overlap 186149 186140 TTTAAAGCATGAAGG TGCTT TGT AAGCA TTTATTTAACCAAAG TERM 166 187065 - 187086 + T 73 -4.3 -4.8048 | TGAGGGCAAAAGTGC GCGATACAG AGCT CAGAATCGC TTTTTGATATGCCAG TERM 167 189632 - 189609 - T 71 -5.3 -4.58466 | TTGATAAGCACAAAA CCTCTATGT TGCAAG ACTTAGAGG CTGGCCGTAGCTTGG TERM 168 189836 - 189860 + T 100 -10 -5.58522 | TCCAACAAAACCCCC CCCTTGCTAC TTCAC GCAGCAAGGG TTTTTGTTTTATGTC TERM 169 189916 - 189904 - T 70 -9.1 -3.2327 | CGAAGCGATTATCAA GGCGT CCA ACGCC ATCAATAATGATGCT Pnec_0208 190576 - 189884 - | fumarylacetoacetate (FAA) hydrolase Pnec_0209 190709 - 190909 + | hypothetical protein TERM 170 191111 - 191128 + T 77 -11.3 -2.73243 | overlap 191110 TTGTAGCGGGAGAGG TGGGTGC ACTT GCACCCA ATTTACGGCCTGCCT Pnec_0211 192642 - 191638 - | Polyprenyl synthetase TERM 171 192301 - 192291 - G 74 -6.8 -4.25283 | opp_overlap 192293, overlap 192292 AGTCCCCCACCAAAA CGCT GGC AGCG TTGCCAAAAGCAGCG TERM 172 192293 - 192323 + g 83 -9.7 -4.11371 | opp_overlap 192291 192292 TCCCCCACCAAAACG CTGGCAGCGTTGC CAAAA GCAGCGTTGGCAG TTTTACGACCTCTTC TERM 173 192665 - 192685 + H 83 -11.9 -3.14294 | ATAATAATGGGCTTA GCTGGTCCA GGG TGGACTAGC TTAAATGTAGATATT Pnec_0212 192718 - 193029 + | ribosomal protein L21 Pnec_0213 193049 - 193309 + | ribosomal protein L27 TERM 174 193366 - 193388 + F 100 -19.2 -4.71828 | opp_overlap 193366 TTTAACTCTTAGGAA CAGGCCTCGC TAA GCGAGGCCTG TTTTATTCATGAAAT TERM 175 193388 - 193366 - f 100 -19.2 -3.16742 | opp_overlap 193366 TTTAACTCTTAGGAA CAGGCCTCGC TAA GCGAGGCCTG TTTTATTCATGAAAT TERM 176 193597 - 193587 - g 80 -6.8 -4.66163 | ACCGTTACGCAAAAA CGCA CAC TGCG AAAAATGGTGAGCCT TERM 177 194068 - 194085 + G 74 -3.3 -5.01732 | overlap 194055 GGGTGCCGCAGAAGG CGCTGGT CTTG GCCATCG TTTTTTAAGGCACTT Pnec_0214 193397 - 194509 + | GTP-binding protein Obg/CgtA Pnec_0215 194506 - 195288 + | glutamate 5-kinase Pnec_0217 196446 - 195853 - | NUDIX hydrolase TERM 178 196061 - 196049 - G 82 -6.9 -4.74504 | AGTTGAATCCAAAAA GGCAC CCA GCGCC ATGCATCAAATTCTG TERM 179 196559 - 196531 - g 95 -11.7 -4.13767 | opp_overlap 196535, overlap 196534 CTCGCCACGCTAAAA GAAGCCCCCTCTG ACG CAGAGGTGGTTTC GCACAAGCTCATGGT TERM 180 196556 - 196534 - g 76 -7.6 -4.19746 | opp_overlap 196535, overlap 196531 GCCACGCTAAAAGAA GCCCCCTCTG ACG CAGAGGTGGT TTCGCACAAGCTCAT TERM 181 196535 - 196555 + G 82 -11.1 -3.53444 | opp_overlap 196534 196531 CCACGCTAAAAGAAG CCCCCTCTG ACG CAGAGGTGG TTTCGCACAAGCTCA Pnec_0218 196495 - 198237 + | prolyl-tRNA synthetase TERM 182 198269 - 198295 + T 74 -7.9 -4.08945 | opp_overlap 198271, overlap 198286 TAGTTATTTCTTGAA GAGCCCGCCAA TGCCC TTGGCGGCCCC TTTTGCAGCCATGCT Pnec_0219 199639 - 198257 - | signal recognition particle protein TERM 183 200318 - 200338 + G 74 -3.4 -5.02715 | gap 1, overlap 200331 TCTTTGGGAAGTCTT TGGTGTTTG ACCA CAAA-ACCA TTTTTGCTTTGATAT Pnec_0220 199660 - 200508 + | cytochrome c assembly protein TERM 184 200538 - 200548 + F 71 -2.4 -5.1287 | overlap 200532 GCTCCTATTGTTTGC GGGC GCA GGCC TTTTTTACCTCTGGA TERM 185 200934 - 200922 - g 73 -7.7 -4.17048 | TTTTTTTCAAAACAA GCTTG ATC CAAGC GAGCACCCTTATTTT Pnec_0221 200653 - 201330 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 186 201346 - 201361 + F 72 -5.4 -4.45577 | GCTATTTTTTTGTAT GTGAGC GTAC GCTTAC TTTTGTAGCCTTTGT TERM 187 201769 - 201787 + G 73 -7.4 -4.09685 | ACAAAATCATTCGCC GCAACGGT TCA GTCGTTGC TTTTGAACCATCCAA Pnec_0222 201606 - 204578 + | ribonucleoside-diphosphate reductase, alpha subunit TERM 188 205308 - 205320 + G 76 -4.1 -4.96646 | GATCAAACTTTGCTT CGATC ACT GATTG TTTTTGCTTGTGTGA Pnec_0223 204624 - 205808 + | Ribonucleoside-diphosphate reductase TERM 189 205914 - 205901 - f 72 -6.7 -4.24404 | opp_overlap 205901 ACTCAAATCCGAAAA CCCTT GCTC AAGGG TGTCTGGGCTATTCT Pnec_0224 206141 - 206371 + | hypothetical protein TERM 190 206438 - 206428 - T 70 -6.8 -4.15044 | opp_overlap 206430, overlap 206429 CCCGCGGCTAAGAAA GCTG CAC CAGC GACTAGTGCGTTGAA TERM 191 206517 - 206536 + T 93 -10 -5.14563 | opp_overlap 206517 CGGGTGTTATTAGAA GGGGTCTC TCAC GAGACTCC TTTTTTAATACCAAA Pnec_0225 207545 - 206586 - | PfkB domain protein TERM 192 207617 - 207637 + r 73 -6.1 -4.30995 | gap 1 TAGGGGTACAGCACC CGCACGCG ATAACC CGCG-GCG TTGTTTTGTGGCAGG Pnec_0226 207861 - 207601 - | ribosomal protein L11 methyltransferase Pnec_0227 208061 - 207834 - | ribosomal protein L11 methyltransferase Pnec_0228 209124 - 208138 - | ribosomal protein L11 methyltransferase TERM 193 208593 - 208606 + g 75 -3.1 -5.10497 | AGCCGCATCCGTAAT CCAAG AGAC TTTGG TTTTTTAAATGACTT Pnec_0229 210505 - 209141 - | acetyl-CoA carboxylase, biotin carboxylase TERM 194 210040 - 210052 + g 74 -3.3 -5.00616 | overlap 210041 CAGCTTTAATGATGA CTGGG TAG CCCAC TTTTTTGGCGGCCGC Pnec_0230 211023 - 210559 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein Pnec_0231 211509 - 211060 - | 3-dehydroquinate dehydratase, type II Pnec_0232 211579 - 211695 + | hypothetical protein TERM 195 211698 - 211722 + T 84 -13.1 -2.57795 | opp_overlap 211701, overlap 211670 TGAGAAAATCTGAAT TTATTGCCTAA AAT TTAGGCAATAA TGAATTGATAGTGAA TERM 196 211719 - 211701 - T 70 -10.4 -2.56761 | opp_overlap 211698 GAAAATCTGAATTTA TTGCCTAA AAT TTAGGCAA TAATGAATTGATAGT Pnec_0233 212287 - 211751 - | Redoxin domain protein TERM 197 211872 - 211884 + g 70 -4.8 -4.46514 | TAAGGTAGCGCACCT TGGG AGTTG CCCA TTTGTTTGGCTAAAT Pnec_0234 212314 - 213720 + | UDP-N-acetylmuramate Pnec_0235 213767 - 214501 + | short-chain dehydrogenase/reductase SDR TERM 198 214547 - 214526 - g 72 -10.2 -2.86071 | overlap 214525 TTTTATACGAAGAAG GTGGCGAT ATCAAG ATCGCCAC AGTCCAGTCTGCCTC TERM 199 215930 - 215955 + G 75 -9.7 -3.61398 | GCGCTTCCGGCCAGC TCCTGGCGGAT CATG GTCTGCCGGGA TTATTCAGAACCCAG Pnec_0236 214504 - 216546 + | ribonuclease II Pnec_0237 216530 - 217300 + | TonB family protein Pnec_0238 217469 - 218374 + | shikimate 5-dehydrogenase TERM 200 218424 - 218443 + G 74 -3.6 -5.0538 | AATGTTTGCTAGCAG GATTTGTG GCGA TGCAAATC TTTTTTGCCCTGCAG TERM 201 219032 - 219050 + G 71 -9.6 -3.1211 | opp_overlap 219026 219031 TTTGATAAACAGCAG TATTGCCG TTG CGGCAGTA TTAACTACTCTACTC Pnec_0239 218384 - 219127 + | monofunctional biosynthetic peptidoglycan transglycosylase Pnec_0240 220008 - 219163 - | orotidine 5'-phosphate decarboxylase Pnec_0241 220082 - 221047 + | magnesium and cobalt transport protein CorA Pnec_0242 221275 - 221057 - | CinA domain protein Pnec_0243 221527 - 221318 - | CinA domain protein Pnec_0244 222081 - 221524 - | phosphatidylglycerophosphatase A TERM 202 223923 - 223907 - H 81 -9.5 -3.89524 | ATCCGACCCCAGAAA TTCTTCC AGA GGAAGAA AAAGCAGTTCGTCCG TERM 203 225225 - 225260 + H 86 -10.8 -4.1399 | opp_overlap 225232, overlap 225228 CATCTAAAGTGCTGG TAATTTATGTAAGCTA TCGA TAACTTACATAAATTA TTTCTATATAAATCA TERM 204 225228 - 225257 + H 76 -8.1 -4.18674 | opp_overlap 225232, overlap 225225 CTAAAGTGCTGGTAA TTTATGTAAGCTA TCGA TAACTTACATAAA TTATTTCTATATAAA Pnec_0247 225419 - 225967 + | hypothetical protein Pnec_0248 226757 - 225996 - | protein of unknown function DUF558 TERM 205 226642 - 226660 + g 76 -8.8 -3.68506 | opp_overlap 226641 226643, overlap 226643 CCTTTTCCGTCAAAT ACGGGGAA AAA TTCCCCGA TTTGGATGCGTCTTA TERM 206 226643 - 226659 + g 79 -12.3 -2.80622 | opp_overlap 226641 226643, overlap 226642 CTTTTCCGTCAAATA CGGGGAA AAA TTCCCCG ATTTGGATGCGTCTT TERM 207 226659 - 226643 - G 85 -12.3 -3.34398 | opp_overlap 226643 226642, overlap 226641 CTTTTCCGTCAAATA CGGGGAA AAA TTCCCCG ATTTGGATGCGTCTT Pnec_0249 226802 - 228796 + | transketolase Pnec_0250 228836 - 229864 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 208 229923 - 229955 + T 100 -14.4 -3.29144 | opp_overlap 229922 229931, overlap 229931 TTTAAGCTTAATTAC GTAAAAAAGACCTC AAATC GAGGTCTTTTTTGC TTCTAAACGGCCTAA TERM 209 229947 - 229931 - T 91 -8.7 -5.12617 | opp_overlap 229923 229931, overlap 229922 TAATTACGTAAAAAA GACCTCA AAT CGAGGTC TTTTTTGCTTCTAAA TERM 210 229931 - 229947 + T 95 -8 -5.32944 | opp_overlap 229931 229922, overlap 229923 TAATTACGTAAAAAA GACCTC AAATC GAGGTC TTTTTTGCTTCTAAA Pnec_0251 230492 - 229989 - | ferric uptake regulator, Fur family TERM 211 230381 - 230393 + g 71 -6.9 -4.09243 | CCAGAATTTTCATTC GCGGC CCG GTCGC TTTTAGGCCGATATC TERM 212 231146 - 231135 - g 70 -2.2 -5.00616 | overlap 231136 TGGTTCTTCAAAAAA GGAC CCTG ATCC ACAGTCTCCTCAGTT Pnec_0252 230524 - 231210 + | SmpA/OmlA domain protein TERM 213 232008 - 232020 + G 72 -9.1 -3.61398 | TGCCCAAGGTTCTTT GCGTG CCG CACGC TTCTTGCAAAACCAA Pnec_0253 231283 - 232083 + | Dihydrodipicolinate reductase TERM 214 232603 - 232636 + G 72 -6.1 -4.21194 | gap 1, opp_overlap 232601 232603 GCTTATCGCAAAACA CAGGTAG-TCAATTGG GAT CCAATTGATCAAACTG TTTTGGCTAATGAGC Pnec_0254 232126 - 234798 + | leucyl-tRNA synthetase Pnec_0255 234813 - 235340 + | rare lipoprotein B precursor Pnec_0256 235358 - 236419 + | DNA polymerase III, delta subunit TERM 215 237094 - 237116 + G 71 -7.6 -3.90856 | overlap 237095 CAATACATTGATGTC ATCGTGCCGC GCG GCGGCAAGAG TTTGATTGCGCGCTT TERM 216 237095 - 237115 + G 75 -11.1 -2.94032 | overlap 237094 AATACATTGATGTCA TCGTGCCGC GCG GCGGCAAGA GTTTGATTGCGCGCT Pnec_0257 236485 - 237762 + | gamma-glutamyl phosphate reductase Pnec_0258 237784 - 238209 + | hypothetical protein TERM 217 238833 - 238823 - g 80 -6.8 -4.72272 | TGGCGTGATGAAAAA GGTG ATG CACC CCTAAAAGAAAATTT TERM 218 238908 - 238924 + G 71 -3.7 -4.86621 | CCTTATTTGATCCGA TGTGC GGAAGTG GCACA TTTTTGATTGAAGCT TERM 219 238991 - 239027 + G 72 -10.4 -2.88033 | gap 2, overlap 238991 238993 CGTGCAGGCATGTAT GGCGATGATGCCAAGCCT AGC AGGCTTG-CAT-ATCGTC CTTTGGTGACTTCTG Pnec_0259 238283 - 239725 + | putative RNA methylase Pnec_0260 239803 - 239973 + | Rubredoxin-type Fe(Cys)4 protein Pnec_0261 239986 - 241287 + | glutamate-1-semialdehyde-2,1-aminomutase Pnec_0262 242150 - 241311 - | bis(5'nucleosyl)-tetraphosphatase, ApaH Pnec_0263 243662 - 242190 - | Deoxyribodipyrimidine photo-lyase Pnec_0264 243733 - 244377 + | protein of unknown function DUF179 Pnec_0265 244370 - 244813 + | Holliday junction resolvase YqgF Pnec_0266 244846 - 245346 + | phosphoribosyltransferase TERM 220 246206 - 246263 + G 77 -8.8 -3.93038 | opp_overlap 246211, overlap 246206 AATGAATCGTGGTGT GGAAA-TTGATTCAGTAGTGGCTGATGG ACCG CAATCAGTCATT-CTGAATCAAGTTACC TTTGGTATTGCAGTG Pnec_0267 245346 - 246314 + | aspartate carbamoyltransferase Pnec_0268 246353 - 247675 + | hypothetical protein TERM 221 248164 - 248139 - g 80 -6.9 -4.56597 | TTTTGGTCCTAAAAA GATCCGCCA GCACTTTT TAGCGGATC GTGAGCCCATTAAGG Pnec_0269 247699 - 248622 + | hypothetical protein Pnec_0270 248665 - 249459 + | hypothetical protein TERM 222 249630 - 249608 - g 74 -3.4 -4.9448 | ATTGATTAAAGAAAA TTGGGCTAAA TTA TCCAGCGCAA AACTTAATCTTGCCC TERM 223 250429 - 250453 + G 79 -7.7 -4.50058 | CATATATAACAATTG GGACGCGTCTC ATT GCGGCGCATCC TTTTGGTTATGGCTC Pnec_0271 249459 - 250805 + | hypothetical protein Pnec_0272 250819 - 251022 + | hypothetical protein Pnec_0273 251048 - 251728 + | hypothetical protein Pnec_0274 252560 - 251715 - | hypothetical protein Pnec_0275 252875 - 252573 - | hypothetical protein TERM 224 252920 - 252931 + r 71 -4.4 -4.66163 | GAGTGGGGGCAGCTA CAAC TTCG GTTG TTTTTGAGTACCGAT Pnec_0276 253370 - 252897 - | hypothetical protein TERM 225 253619 - 253593 - g 70 -10.2 -2.55213 | overlap 253616 TATGCAGGTAACTTA GCCACCCTTGAG CCC CTCAAGAATGAC CCGCGCCATATATTT Pnec_0277 253473 - 254531 + | dTDP-glucose 4,6-dehydratase Pnec_0278 254564 - 255517 + | dTDP-4-dehydrorhamnose reductase Pnec_0279 255529 - 256458 + | glucose-1-phosphate thymidylyltransferase Pnec_0280 256461 - 257021 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 226 257264 - 257284 + G 72 -8.3 -3.76952 | overlap 257243 AAGGATGGCTTTAGA GGGATTGAT CGC ATCATTCCC TTTGGCTTGCGTCGC Pnec_0281 257060 - 258118 + | lipopolysaccharide heptosyltransferase I TERM 227 258406 - 258395 - T 72 -5.8 -4.48741 | TAAGCCACCATAAAA GCCT GTAA AGGC AGTCCGTGTATTTTG Pnec_0283 259404 - 258682 - | type I secretion outer membrane protein, TolC family Pnec_0284 259410 - 259520 + | hypothetical protein TERM 228 259963 - 259989 + G 78 -5.1 -5.06414 | gap 1 CTCAATTTATTCATT GCCTCGATCCCA GCGA TGGGG-CTAGGC TTTTTATTCGGCAAG TERM 229 260337 - 260349 + G 70 -4.8 -4.39002 | GCTGAAGCTTTGGAA GGCA CCGGT TGCC TTTTCTGGAGAATTT Pnec_0285 259696 - 260541 + | undecaprenol kinase Pnec_0286 260576 - 261040 + | hypothetical protein TERM 230 261972 - 261956 - f 80 -10.9 -3.281 | opp_overlap 261955 261949 261948, overlap 261954 261970 GGTCAACTTAGAAGA TGGTCTC AAA GAGACCA CTGTCTACTTTAAGA TERM 231 262109 - 262120 + G 70 -2.2 -4.97312 | CGTGCTATTGAAGAG TTGG GCCC CCAG TTTTTAATTCCTTTT TERM 232 262776 - 262753 - g 79 -8.1 -4.25074 | opp_overlap 262751 262753 GACTAAATTTGAAAA CCGTGGCAT CAAGCT AGGCCACGG TGTTTGGGATCTGGT Pnec_0288 262004 - 262807 + | tRNA (guanine-N(7)-)-methyltransferase Pnec_0289 264328 - 262856 - | succinic semialdehyde dehydrogenase TERM 233 264408 - 264383 - R 100 -14.8 -5.37865 | opp_overlap 264378 264383 CTAACAAGTAAAAAA GCCACCAAGC GATGAG GCTTGGTGGC TTAGCTTCTTGATAG TERM 234 264383 - 264408 + r 100 -14.8 -3.30203 | opp_overlap 264383, overlap 264378 CTAACAAGTAAAAAA GCCACCAAGC GATGAG GCTTGGTGGC TTAGCTTCTTGATAG Pnec_0290 264947 - 264438 - | NusB antitermination factor Pnec_0291 265468 - 264953 - | 6,7-dimethyl-8-ribityllumazine synthase Pnec_0292 266614 - 265484 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase Pnec_0293 266844 - 267107 + | hypothetical protein Pnec_0294 267097 - 267330 + | hypothetical protein TERM 235 267357 - 267368 + G 72 -5.8 -4.44667 | ACCAGAAAAGATTTG GCCT TTCA AGGC TTTATTGTTGAGCGG Pnec_0295 267354 - 267644 + | hypothetical protein Pnec_0296 267652 - 267951 + | hypothetical protein Pnec_0297 267977 - 268477 + | hypothetical protein Pnec_0298 268537 - 269655 + | riboflavin biosynthesis protein RibD TERM 236 269661 - 269649 - f 75 -4.9 -4.86621 | ACGTTTAATTAAAAA TAGTT AAG AACTA AAATCACTTTATGTT Pnec_0299 269672 - 270286 + | riboflavin synthase, alpha subunit TERM 237 270349 - 270360 + T 100 -4.4 -5.76949 | CCGGGAAAAATTAGT TGAG GCAT CTCA TTTTTTTTGACGATG Pnec_0300 271115 - 270489 - | exsB protein Pnec_0301 271815 - 271084 - | tol-pal system protein YbgF TERM 238 271771 - 271784 + gr 85 -8.1 -4.72007 | opp_overlap 271771 GGTACTTAAACAAAA CGCTC GTGA GAGCG TTTGTTTTGCTGGGC TERM 239 271784 - 271771 - GR 88 -8.1 -4.90778 | opp_overlap 271771 GGTACTTAAACAAAA CGCTC GTGA GAGCG TTTGTTTTGCTGGGC Pnec_0302 272315 - 271815 - | peptidoglycan-associated lipoprotein Pnec_0303 273648 - 272437 - | Tol-Pal system beta propeller repeat protein TolB Pnec_0304 274602 - 273775 - | protein TolA TERM 240 274125 - 274146 + g 82 -7.9 -4.62069 | opp_overlap 274124 274125, overlap 274124 CCGCTGCACGCAAAC GCGCGAGCT GATC AGCGCGTGC TTTTTCAGCTGCAGC Pnec_0305 275050 - 274631 - | Biopolymer transport protein ExbD/TolR Pnec_0306 275710 - 275054 - | protein TolQ TERM 241 275571 - 275586 + g 82 -7.5 -4.64676 | GTATCTTGGCGAACC CCGCG CAAAAC CGCGG TTTTCTTGAAAATAA Pnec_0307 275787 - 277031 + | Glycine hydroxymethyltransferase Pnec_0308 277066 - 277512 + | ATP-cone domain protein TERM 242 277564 - 277516 - T 89 -14.1 -3.03085 | opp_overlap 277532, overlap 277532 GAGCTCAAATAATGA TCTTCAAAACAAAAAAGGACTGC GAT GCAGTCCTTTTTTGTTTAGCCAA AACGAATTGGCGGTA TERM 243 277532 - 277548 + T 100 -12.3 -5.63517 | opp_overlap 277516 277532 CTTCAAAACAAAAAA GGACTGC GAT GCAGTCC TTTTTTGTTTAGCCA TERM 244 277548 - 277532 - T 100 -12.3 -5.79595 | opp_overlap 277532, overlap 277516 CTTCAAAACAAAAAA GGACTGC GAT GCAGTCC TTTTTTGTTTAGCCA Pnec_0309 278247 - 277582 - | Nucleoside-triphosphate--adenylate kinase Pnec_0310 279126 - 278362 - | 3-deoxy-D-manno-octulosonate cytidylyltransferase Pnec_0311 279335 - 279156 - | protein of unknown function DUF343 Pnec_0312 280504 - 279404 - | tetraacyldisaccharide 4'-kinase Pnec_0313 281003 - 280527 - | Biopolymer transport protein ExbD/TolR Pnec_0314 281659 - 281144 - | MotA/TolQ/ExbB proton channel Pnec_0315 281974 - 283194 + | exodeoxyribonuclease VII, large subunit Pnec_0316 283384 - 284703 + | hypothetical protein Pnec_0317 285766 - 284729 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 245 285592 - 285604 + g 71 -3.3 -4.90869 | opp_overlap 285592, overlap 285585 TACCGCCGCCTAAAA CTCGC CAT GCCAG TTTTTGGTTAGTAAT Pnec_0318 285925 - 286410 + | protein of unknown function DUF520 Pnec_0319 286403 - 287326 + | tyrosine recombinase XerD TERM 246 287708 - 287724 + G 73 -4.4 -4.90525 | AGGTGGGAAAGGTGT TGCTAC TGCGT GTGGCA TTTTATTTGGCATTA Pnec_0320 287358 - 287984 + | protein of unknown function DUF205 Pnec_0321 288042 - 288413 + | membrane protein-like protein Pnec_0323 289384 - 289518 + | hypothetical protein TERM 247 289928 - 289914 - g 79 -2.1 -5.48054 | overlap 289918 289921 ATGAAAAGGAAAAAA GCAAC CACCT ATTGC CAAGCAAGAAGTAAT Pnec_0324 289712 - 289942 + | hypothetical protein Pnec_0325 290035 - 290256 + | hypothetical protein Pnec_0326 290253 - 290480 + | hypothetical protein Pnec_0327 290677 - 290985 + | High potential iron-sulfur protein TERM 248 291070 - 291021 - f 100 -21.1 -3.14344 | opp_overlap 291022 291025 291038 291068, overlap 291025 291032 291038 GATTTCCCTCATTAA TTGAGGGTAAATAAAAAGCCGCT TTAA AGCGGCTTTTTATTTACCCTGAT TTTTAAGATCTAGTT TERM 249 291022 - 291069 + F 100 -24.6 -4.65168 | opp_overlap 291021 291025 291032 291038, overlap 291025 291038 291068 ATTTCCCTCATTAAT TGAGGGTAAATAAAAAGCCGCT TTAA AGCGGCTTTTTATTTACCCTGA TTTTTAAGATCTAGT TERM 250 291066 - 291025 - f 100 -26.3 -2.56596 | opp_overlap 291022 291025 291038, overlap 291021 291032 291038 TCCCTCATTAATTGA GGGTAAATAAAAAGCCGCT TTAA AGCGGCTTTTTATTTACCC TGATTTTTAAGATCT TERM 251 291025 - 291066 + F 100 -26.3 -3.25567 | opp_overlap 291025 291021 291032 291038, overlap 291022 291038 TCCCTCATTAATTGA GGGTAAATAAAAAGCCGCT TTAA AGCGGCTTTTTATTTACCC TGATTTTTAAGATCT TERM 252 291059 - 291032 - f 100 -15.8 -3.6215 | opp_overlap 291025 291022 291038, overlap 291025 291021 291038 TTAATTGAGGGTAAA TAAAAAGCCGCT TTAA AGCGGCTTTTTA TTTACCCTGATTTTT TERM 253 291053 - 291038 - f 100 -10.4 -5.28942 | opp_overlap 291025 291022 291038, overlap 291032 291025 291021 GAGGGTAAATAAAAA GCCGCT TTAA AGCGGC TTTTTATTTACCCTG TERM 254 291038 - 291053 + F 100 -10.4 -5.28942 | opp_overlap 291038 291032 291025 291021, overlap 291025 291022 GAGGGTAAATAAAAA GCCGCT TTAA AGCGGC TTTTTATTTACCCTG Pnec_0328 291193 - 291597 + | HPP family protein+B94 Pnec_0329 291906 - 291667 - | hypothetical protein TERM 255 292779 - 292765 - g 86 -4.2 -5.60993 | overlap 292767 CCTGGCAGAAAAAAA CTGAAG ATG CTTCTG GTGGGGTGAGTTTTA TERM 256 293186 - 293174 - g 86 -2.7 -5.7946 | GCGTGAAGAAAAAAA TTTAC ATC GCAAA GTTTCTAGACCATGG Pnec_0330 292044 - 293519 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 257 294325 - 294335 + G 71 -6.8 -4.07885 | opp_overlap 294332 AGCTTCAGGCCTTTA CCCA TAA TGGG TTTTGGCAGCCCATG Pnec_0331 293652 - 294425 + | glucose-1-phosphate cytidylyltransferase Pnec_0332 294439 - 295533 + | CDP-glucose 4,6-dehydratase Pnec_0333 295585 - 296676 + | N-acetylneuraminic acid synthase, N-terminal domain Pnec_0334 296648 - 297421 + | short-chain dehydrogenase/reductase SDR Pnec_0335 297405 - 298493 + | 3-dehydroquinate synthase Pnec_0336 298500 - 299567 + | NAD-dependent epimerase/dehydratase Pnec_0337 299564 - 301369 + | thiamine pyrophosphate protein TPP binding domain protein Pnec_0338 301384 - 301809 + | GtrA family protein Pnec_0339 301809 - 302729 + | Methyltransferase type 12 TERM 258 303384 - 303398 + G 71 -10 -3.20382 | overlap 303382 CCCTATTTGATATTG CCATGC TGG GCATGG TTAGTCACTCTAAAG Pnec_0340 302732 - 303676 + | glycosyl transferase family 2 TERM 259 303798 - 303813 + G 82 -3.2 -5.55695 | GCTGTAGAGGTTTTA CTCAGA ATAG TCGGAG TTTTTTCTCTTGTTA TERM 260 304849 - 304861 + G 72 -2.7 -5.06103 | overlap 304850 TAATCGCACCATTTT TGTAT TAC ATACG TTTTTTGCCCGTTGT TERM 261 305284 - 305253 - g 85 -7.3 -4.94972 | opp_overlap 305255, overlap 305254 305255 TATGAGAAGCAAAAA TGGGACGTCCAAA TTATAT TTTGGACGTCCTT GCTATTACTATTCTC TERM 262 305283 - 305254 - g 79 -10.8 -3.55899 | opp_overlap 305255, overlap 305253 305255 ATGAGAAGCAAAAAT GGGACGTCCAAA TTATAT TTTGGACGTCCT TGCTATTACTATTCT TERM 263 305282 - 305255 - g 86 -14.3 -2.72455 | opp_overlap 305255, overlap 305254 305253 TGAGAAGCAAAAATG GGACGTCCAAA TTATAT TTTGGACGTCC TTGCTATTACTATTC TERM 264 305255 - 305282 + G 93 -14.3 -3.41978 | opp_overlap 305255 305254 305253 TGAGAAGCAAAAATG GGACGTCCAAA TTATAT TTTGGACGTCC TTGCTATTACTATTC Pnec_0341 303669 - 305948 + | hypothetical protein TERM 265 306848 - 306876 + G 71 -3.3 -4.85894 | ATTCTATGTTGTTGC TACATGCTATA TATTAGT TATAGGATGTA TTTTGTATTTCATTT Pnec_0342 305964 - 307292 + | hypothetical protein Pnec_0343 310264 - 307298 - | hypothetical protein TERM 266 307605 - 307640 + g 76 -4.8 -4.77757 | AATGAAACAATATGA TCGTAGGGTGAAAGTA TTAA TACTTTCACATTGGGA TTTTCATTTTTCAAA TERM 267 308564 - 308550 - G 76 -4.2 -5.07275 | CTAGATACATAAAAA CATAGC AAT GCAATG AACACTATTCCTGTG TERM 268 309089 - 309073 - G 71 -9.5 -3.29324 | opp_overlap 309072 309071, overlap 309087 TCGACCTAAAGTGAA TGGTCTT ATT AAGACCA AAATTTATTATTTTG Pnec_0344 312164 - 310281 - | hypothetical protein Pnec_0345 314965 - 312161 - | hypothetical protein TERM 269 313065 - 313045 - G 75 -6.1 -4.50353 | AAACGAAGAAAATAA TTACCGCTG CAA CAGTGGCAA TGGAAGTCGCGCAAA TERM 270 315210 - 315264 + r 70 -6.6 -4.07124 | opp_overlap 315262, overlap 315212 315217 315260 315262 TAACGCTTAGTTATT TGAGGGCTTTCCAGTAGTGATTGAAT CAT ATTCAATCACTACTGGAAGTTAAGTA TTTCTATAAATACTA TERM 271 315217 - 315257 + r 100 -22.3 -3.2779 | overlap 315212 315210 TAGTTATTTGAGGGC TTTCCAGTAGTGATTGAAT CAT ATTCAATCACTACTGGAAG TTAAGTATTTCTATA Pnec_0346 316654 - 315374 - | hypothetical protein TERM 272 316326 - 316309 - G 76 -4.1 -4.92756 | opp_overlap 316312, overlap 316312 AGTAGGAAAAATAAA TTATCCC AATC GGGATTA GTAGCAAGGATGTAA Pnec_0347 317718 - 316675 - | hypothetical protein TERM 273 317217 - 317229 + g 71 -7.7 -3.92659 | TGGGAAAAGTTTTTC TGCCA AAG TGGCA TTTAAATTTTCCGGC TERM 274 318002 - 318016 + G 75 -2.8 -5.1101 | TGTCACTCTTAATAT TCCAGA GAC TCTTGA TTTTTTAGATGATGA TERM 275 318205 - 318178 - g 70 -2 -4.91712 | gap 1, opp_overlap 318183, overlap 318172 318179 CCGAACTCATAAAAA TTTTAGCGCAACC TAA GGTTG-GCTTAAC TGCGCCACTTGTGTA Pnec_0348 317892 - 318626 + | glycosyl transferase family 2 TERM 276 319034 - 319012 - g 72 -4.8 -4.57073 | opp_overlap 319003 319002 GAGTGGGGGTAAAAA CCCGTTTGTT ACT AACAATGGGG TCAGCAGGTCTTGCG Pnec_0349 318708 - 319808 + | glycosyl transferase family 4 TERM 277 319861 - 319887 + T 84 -6.8 -5.03145 | opp_overlap 319861 319865 TATAGCTATTTATAA TTAATTATGATT AAA ATTCATAATTAA TTTTTTCAAAAGTTC Pnec_0350 320203 - 320006 - | hypothetical protein TERM 278 320527 - 320547 + G 78 -12.7 -2.71144 | TTCGTCGTCACATTT TTGCAGTAG CTG CTACTGCAA TGCTTGCAACCGGTG Pnec_0351 320505 - 320630 + | hypothetical protein Pnec_0354 321861 - 321337 - | hypothetical protein Pnec_0355 322739 - 321921 - | protein of unknown function DUF81 TERM 279 322346 - 322332 - G 74 -11.4 -2.85896 | opp_overlap 322332, overlap 322329 GGGATTAAGCAAGCA CGGAGG TGG CCTCCG TTTTGGATTGGGAAG TERM 280 322332 - 322346 + g 91 -11.4 -4.27316 | opp_overlap 322332 322329 GGGATTAAGCAAGCA CGGAGG TGG CCTCCG TTTTGGATTGGGAAG TERM 281 323760 - 323734 - g 100 -17.4 -5.44119 | opp_overlap 323732 323731 323755 CTGAGTTGAAAAAAA TGCAGGCATCCG CTG CAGATGCCTGCA AACTTATGCAGGTTT TERM 282 323755 - 323772 + G 74 -7 -4.36914 | opp_overlap 323734, overlap 323732 323731 CATCCGCTGCAGATG CCTGCA AACTTA TGCAGG TTTTATCCAACAGCG TERM 283 323957 - 323970 + G 72 -8.1 -3.68351 | TTACTATTCACTAGC CAGCG AGGT CGCTG TTTCGGTGATGGGCC Pnec_0357 323703 - 324014 + | transcriptional regulator, ArsR family Pnec_0358 324166 - 324020 - | hypothetical protein Pnec_0359 324438 - 324199 - | hypothetical protein TERM 284 324407 - 324419 + g 72 -4.8 -4.56597 | ATCACAAACTTTTTT TGCC AGTTC GGCA TTTTTCCAAGGCGGC Pnec_0361 325751 - 325245 - | FMN-binding domain protein TERM 285 325627 - 325641 + g 78 -5.6 -4.79352 | GGGTGGCGAATGCTA GAAGCG GAG CGCATC TTTTCTTGTAGATCA Pnec_0362 326686 - 325850 - | conserved hypothetical secreted protein TERM 286 326727 - 326713 - H 80 -7.2 -4.55887 | overlap 326707 GGTTAAAAATATAAA TGAGAA TAG TTCTCA ATTAAAAATAATGAC Pnec_0363 326805 - 327047 + | hypothetical protein Pnec_0364 328064 - 327039 - | DNA/RNA non-specific endonuclease TERM 287 328327 - 328314 - H 100 -3.8 -5.85011 | opp_overlap 328314 CAAAAATGAAAAAAA GTCC TCCTCG GGAC ATTTTTTATAGAGTG Pnec_0365 328570 - 329562 + | Lytic transglycosylase catalytic TERM 288 329594 - 329621 + F 100 -11.4 -4.59591 | opp_overlap 329600, overlap 329600 AATATCGCTGAATAT AAAAAAGCCACC CTAG GGTGGCTTTTTG TTTTGCTGTTTTCTT TERM 289 329600 - 329615 + F 100 -10.4 -5.52079 | opp_overlap 329600, overlap 329594 GCTGAATATAAAAAA GCCACC CTAG GGTGGC TTTTTGTTTTGCTGT TERM 290 329615 - 329600 - f 100 -10.4 -5.47159 | opp_overlap 329600 329594 GCTGAATATAAAAAA GCCACC CTAG GGTGGC TTTTTGTTTTGCTGT TERM 291 331089 - 331121 + F 70 -5.5 -4.38712 | TACTATTTAACCTAC CGCTTGCTAAAACCT CTT AGGTTGTTGCCAGTG TTTTGTGACGCTGAG TERM 292 334662 - 334684 + G 73 -4 -4.73613 | opp_overlap 334665, overlap 334665 AAGGCGGTGCAAGGT AAACCGGCGG ATA TCGGCGGTTA TTTTGTTGCTGATCC TERM 293 334665 - 334681 + G 72 -5.7 -4.46587 | opp_overlap 334665, overlap 334662 GCGGTGCAAGGTAAA CCGGCGG ATA TCGGCGG TTATTTTGTTGCTGA Pnec_0369 332535 - 334769 + | isocitrate dehydrogenase, NADP-dependent TERM 294 334781 - 334812 + F 100 -14.8 -3.85817 | opp_overlap 334781 TTAATAAGTAAAAAA TACTATACCTAATT TTTA AATTAGGTATAGTA TTTATAGGCAAACCT TERM 295 334812 - 334781 - f 100 -14.8 -5.37865 | opp_overlap 334781 TTAATAAGTAAAAAA TACTATACCTAATT TTTA AATTAGGTATAGTA TTTATAGGCAAACCT TERM 296 334819 - 334838 + F 100 -12.2 -4.98531 | opp_overlap 334813 GGTATAGTATTTATA GGCAAACC TTTG GGTTTGCC TTTTTAATTTCCAAG Pnec_0370 334876 - 335283 + | BLUF domain protein Pnec_0371 335340 - 336302 + | oxidoreductase molybdopterin binding Pnec_0372 336656 - 336868 + | Lipocalin family protein Pnec_0374 337649 - 337801 + | hypothetical protein Pnec_0375 338367 - 337810 - | hypothetical protein Pnec_0376 338607 - 338377 - | hypothetical protein TERM 297 338552 - 338520 - G 76 -8.3 -4.12902 | opp_overlap 338526, overlap 338522 TAATGAGTCCTAAAA TAGGCGCAGATGAAC TCT GTTCTGCAGCGCCCA CCAAAGCGGTAGCAA TERM 298 338550 - 338522 - G 72 -8.7 -3.6581 | opp_overlap 338526, overlap 338520 ATGAGTCCTAAAATA GGCGCAGATGAAC TCT GTTCTGCAGCGCC CACCAAAGCGGTAGC Pnec_0378 339959 - 339417 - | hypothetical protein Pnec_0379 340063 - 340788 + | pseudouridine synthase Pnec_0380 340799 - 341089 + | transcriptional coactivator/pterin dehydratase Pnec_0381 341305 - 341090 - | hypothetical protein Pnec_0383 342624 - 342863 + | hypothetical protein Pnec_0385 343547 - 344359 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 299 344377 - 344402 + T 78 -10.5 -3.63805 | opp_overlap 344382, overlap 344382 AGAAGTTAGGTTACA AAAAAGGACCC CGCG GGGTCCTTTTA TTTACACTCTAAAGT TERM 300 344382 - 344397 + T 93 -10.4 -4.89521 | opp_overlap 344382, overlap 344377 TTAGGTTACAAAAAA GGACCC CGCG GGGTCC TTTTATTTACACTCT TERM 301 344397 - 344382 - T 100 -10.4 -5.26316 | opp_overlap 344377 344382 TTAGGTTACAAAAAA GGACCC CGCG GGGTCC TTTTATTTACACTCT Pnec_0386 344888 - 344400 - | Dihydrofolate reductase TERM 302 344465 - 344430 - G 74 -8.2 -3.89617 | gap 1, opp_overlap 344428 344430 344430, overlap 344424 AGTGATAAAGCTAAA GGTGATCTCACCCTCGG AAC CCG-GGGTGCGCTCAAC CTCTTTCCATGCTGA Pnec_0387 345694 - 344900 - | Thymidylate synthase TERM 303 345630 - 345610 - G 73 -9.7 -3.36515 | opp_overlap 345610, overlap 345608 TTTGATGTCCAAATA CCGAGACTG TGC CAGTCCCAG TTCTATCGGACTTTT Pnec_0388 346301 - 345765 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Pnec_0390 347116 - 346793 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 304 348278 - 348309 + r 100 -16.8 -3.61268 | opp_overlap 348278 348281 348285, overlap 348281 348285 TTGAGAGGTTGATAA CAATAAAGCCGAGT CATT GCTCGGCTTTATTG TTTGGAGCTTAACTC TERM 305 348309 - 348278 - R 100 -16.1 -3.32343 | opp_overlap 348278 348281 348285, overlap 348281 348285 TTGAGAGGTTGATAA CAATAAAGCCGAG TCATTG CTCGGCTTTATTG TTTGGAGCTTAACTC TERM 306 348306 - 348281 - R 93 -12 -3.80174 | opp_overlap 348278 348281 348285, overlap 348278 348285 AGAGGTTGATAACAA TAAAGCCGAG TCATTG CTCGGCTTTA TTGTTTGGAGCTTAA TERM 307 348281 - 348306 + r 100 -12.7 -3.94 | opp_overlap 348281 348278 348285, overlap 348278 348285 AGAGGTTGATAACAA TAAAGCCGAGT CATT GCTCGGCTTTA TTGTTTGGAGCTTAA TERM 308 348302 - 348285 - R 87 -8.4 -4.51812 | opp_overlap 348281 348278 348285, overlap 348281 348278 GTTGATAACAATAAA GCCGAG TCATTG CTCGGC TTTATTGTTTGGAGC TERM 309 348285 - 348302 + r 88 -9.1 -4.56978 | opp_overlap 348285 348281 348278, overlap 348281 348278 GTTGATAACAATAAA GCCGAGT CATT GCTCGGC TTTATTGTTTGGAGC Pnec_0392 348633 - 348340 - | hypothetical protein TERM 310 348584 - 348567 - G 76 -8.5 -4.18019 | AGAAGCAGAGATAAA CCAAAAC TAAG GTTTTGG CGGTATGCATTGGGT Pnec_0393 349104 - 348646 - | MoeA domain protein domain IV TERM 311 348960 - 348950 - G 80 -5.4 -4.95896 | ACAAATTGATAAAAA GTCA CCA TGAC TGCAACCGGATTACC Pnec_0394 349628 - 349155 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 312 349853 - 349836 - R 72 -8.5 -3.65224 | opp_overlap 349836 ACCTGAGCGTAAGAA GGTTTTG AAAT CAAAACC TTCGTTAGCAAAGAG TERM 313 350599 - 350613 + r 73 -2.9 -5.03314 | AGCAAGGTAGGGATA GTTTT GATCA AAAAC TTTTTTAGGCATGCA TERM 314 350877 - 350847 - R 75 -9.7 -3.53012 | opp_overlap 350847, overlap 350832 GGGGTTTCTGCCAAA CCGCCAATTATCC TTGTG GGATAAAAGGCGG TCTGTAGAAAAAGCT TERM 315 350847 - 350877 + r 72 -10.4 -2.87211 | opp_overlap 350832 350847 GGGGTTTCTGCCAAA CCGCCAATTATCCT TGT GGGATAAAAGGCGG TCTGTAGAAAAAGCT Pnec_0396 353499 - 350902 - | ribonuclease, Rne/Rng family TERM 316 354170 - 354156 - g 80 -5.6 -5.06414 | GCGGGTGAATAAAAA GCGGGC TGA ACCCAC AACTCGCCTGATTGA TERM 317 354453 - 354463 + G 76 -2.4 -5.2853 | overlap 354447 354448 354461 TCGTTTAGACCGAGA CACC TCA GGCG TTTTGTTTTTGGCTA Pnec_0397 353965 - 354972 + | pseudouridine synthase, RluA family TERM 318 355582 - 355598 + G 77 -10.9 -3.22448 | ATCCCCCTGATACTC TGAAGGC ATC GCCTTCA TTGGTACATGTTGAT Pnec_0398 354981 - 355661 + | HAD-superfamily hydrolase, subfamily IA, variant 1 Pnec_0399 355673 - 356614 + | peptidase S49 TERM 319 356654 - 356683 + T 86 -10.9 -4.13767 | opp_overlap 356653 356654 356656 CAATCACTAAAGAAC TAGGCCAATAGTA GAAA TACTGTTGGTCTA TTTTGCAATGGAGCG Pnec_0400 357423 - 356653 - | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Pnec_0401 358070 - 357432 - | maf protein Pnec_0402 358114 - 358689 + | protein of unknown function DUF177 TERM 320 358835 - 358819 - g 100 -3.7 -5.92399 | CAACAAAACAAAAAA TCACCTT CCA AACGTGA CATGCATCGTGCGCA Pnec_0403 358795 - 358974 + | ribosomal protein L32 TERM 321 359019 - 359000 - f 71 -7.8 -3.73008 | opp_overlap 359000 358993 TCTAAACAGATAGAA GCGGCTCC AGTA AAAGCCGC TTTTTTCTTGGATAA TERM 322 359000 - 359019 + F 100 -6.4 -5.4833 | opp_overlap 359000, overlap 358993 TCTAAACAGATAGAA GCGGCT CCAGTAAA AGCCGC TTTTTTCTTGGATAA TERM 323 359231 - 359219 - g 72 -9.1 -3.59627 | AGTAAATCTCCTAAA GCTCC GAT GGAGC GAATTCAAATTATTC Pnec_0404 359060 - 360073 + | fatty acid/phospholipid synthesis protein PlsX Pnec_0405 360070 - 361056 + | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 324 361976 - 361991 + G 72 -9 -3.55622 | opp_overlap 361974 361975 361970 361978 TATAAATGATCAAGT CACTGG GGTG CCAGTG TTTGACGAAGTTAGC Pnec_0406 361101 - 362036 + | malonyl CoA-acyl carrier protein transacylase Pnec_0407 362071 - 362814 + | 3-oxoacyl-(acyl-carrier-protein) reductase Pnec_0408 362916 - 363155 + | acyl carrier protein Pnec_0409 363177 - 364424 + | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 325 364558 - 364575 + G 72 -5.5 -4.51799 | overlap 364573 CTCCGCGCAAAATCC TCGGGTA ACGA TCCCCGA TTTTGTCGATTTGGT TERM 326 365860 - 365872 + G 71 -6.9 -4.03413 | opp_overlap 365860 CTTAGATGCCAACAA GGCCG TTC CGGTC TTTATATGCCGCGCT Pnec_0410 364499 - 365923 + | protease Do TERM 327 365991 - 366033 + F 79 -4.8 -5.09225 | overlap 366004 ACAATCACTTTAAGA CGGCTTTTTGCAGCGCATCA TTG TGGTGCGTTCTGACAAGGCG TTTTTTGAATGACCT Pnec_0411 366060 - 367865 + | GTP-binding protein LepA Pnec_0412 367865 - 368671 + | signal peptidase I Pnec_0413 368677 - 369468 + | Ribonuclease III TERM 328 369800 - 369780 - g 81 -3.9 -5.36965 | GAAGATGATAAAAAA GTCCTGAAG TTG CTCCCAGAC GATTTGCCAGTAGTG Pnec_0414 369513 - 370406 + | GTP-binding protein Era TERM 329 371000 - 371025 + G 76 -4.7 -4.91109 | opp_overlap 371000 GTTCTGACCGGAAAA TCACTCCTAGC CATA GCTATTAGTGA TTTTTCTGATCCAGA Pnec_0415 370412 - 371146 + | DNA repair protein RecO TERM 330 371885 - 371870 - f 85 -9 -4.3586 | TTATTGACATGAAAA CCCTGA TGAT TCAGGG CAGAGCAAACTCTTA Pnec_0417 371928 - 372338 + | holo-acyl-carrier-protein synthase TERM 331 372425 - 372439 + G 70 -2.1 -4.93877 | overlap 372421 GTATTTCGCATCCAC TGACG GGTGG CGTTA TTTTGTTTGGTCGCA Pnec_0418 372331 - 373404 + | Beta-N-acetylhexosaminidase Pnec_0420 374405 - 374088 - | GCN5-related N-acetyltransferase TERM 332 374435 - 374466 + r 100 -14.6 -3.2963 | opp_overlap 374435 374442, overlap 374442 GGCGCGTTAGTAGAA TATAAAAGGCCCGG CAGG CCGAGCCTTTTATA TTGTAGCGGGCTAAT TERM 333 374466 - 374435 - R 100 -16.8 -3.40403 | opp_overlap 374435 374442, overlap 374442 GGCGCGTTAGTAGAA TATAAAAGGCCCGG CAGG CCGAGCCTTTTATA TTGTAGCGGGCTAAT TERM 334 374442 - 374459 + r 89 -8.3 -4.73682 | opp_overlap 374435 374442, overlap 374435 TAGTAGAATATAAAA GGCCCGG CAGG CCGAGCC TTTTATATTGTAGCG TERM 335 374459 - 374442 - R 91 -10.5 -4.75289 | opp_overlap 374442 374435, overlap 374435 TAGTAGAATATAAAA GGCCCGG CAGG CCGAGCC TTTTATATTGTAGCG Pnec_0421 375041 - 374481 - | translation elongation factor P Pnec_0422 376199 - 375129 - | hypothetical protein Pnec_0423 376252 - 378108 + | excinuclease ABC, C subunit TERM 336 378251 - 378265 + G 74 -3.6 -5.05601 | CATTTGAAAAGAATT TGATTG CGG CAATTA TTTTTATCTCTGCTG Pnec_0424 378139 - 378714 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 337 378914 - 378937 + T 86 -8.2 -4.8622 | CCGCTCCAAGTTCGA TGGGAAGC CCTAAAAA GCTTCCCA TTTTTGATTCAAGAG TERM 338 379064 - 379048 - T 72 -9.5 -3.14211 | opp_overlap 379046 ATTTGTCTTGACGAA TTAGGTG CAT CACCTAA AATACTTTTAACTAA TERM 339 379621 - 379647 + T 100 -12.4 -4.43859 | opp_overlap 379626, overlap 379626 TCATCGCAGTAAATA AAAAAGGCCTCT AAA AGAGGCCTTTTG TTTTATGGGCTTGTG TERM 340 379626 - 379642 + T 100 -12.3 -5.18371 | opp_overlap 379626, overlap 379621 GCAGTAAATAAAAAA GGCCTCT AAA AGAGGCC TTTTGTTTTATGGGC TERM 341 379642 - 379626 - T 100 -12.3 -5.68438 | opp_overlap 379621 379626 GCAGTAAATAAAAAA GGCCTCT AAA AGAGGCC TTTTGTTTTATGGGC Pnec_0426 380383 - 379664 - | transcriptional repressor, LexA family Pnec_0428 381651 - 382025 + | ribosomal protein S6 Pnec_0429 382160 - 382378 + | putative primosomal replication protein N, PriB Pnec_0430 382392 - 382646 + | ribosomal protein S18 Pnec_0431 382660 - 383112 + | ribosomal protein L9 TERM 342 383260 - 383240 - g 73 -9.7 -3.30124 | opp_overlap 383238 383241, overlap 383241 CCGCATTCTGTAGAA GCCGAGCAA TCT TTGCTCGGT GGTCTACTGATCGAT TERM 343 383259 - 383241 - g 80 -13.2 -2.57931 | opp_overlap 383238 383241, overlap 383240 CGCATTCTGTAGAAG CCGAGCAA TCT TTGCTCGG TGGTCTACTGATCGA TERM 344 383241 - 383259 + G 81 -13.2 -2.67515 | opp_overlap 383241 383240, overlap 383238 CGCATTCTGTAGAAG CCGAGCAA TCT TTGCTCGG TGGTCTACTGATCGA Pnec_0432 383138 - 384577 + | replicative DNA helicase TERM 345 384639 - 384655 + F 100 -12.3 -4.59853 | opp_overlap 384639 CAATAAATAAAAAAA GCCTCAC AGT GTGAGGC TTTTTAAAAAATTAG TERM 346 384655 - 384639 - f 100 -12.3 -6.08342 | opp_overlap 384639 CAATAAATAAAAAAA GCCTCAC AGT GTGAGGC TTTTTAAAAAATTAG Pnec_0433 385165 - 385299 + | hypothetical protein TERM 347 385453 - 385429 - T 100 -16.5 -4.43877 | overlap 385417 TAAGCCGCAAATAAA TGCCGCACCCT AGA AGAGTGCGGCA TAAGGGGGTCTTCTT TERM 348 385727 - 385741 + T 91 -8.6 -5.01811 | CAAAAGTTCTTCCGC GCATGA AGT TCATGC TTTTTACTTTGATGC TERM 349 387132 - 387122 - T 100 -8.2 -5.79595 | opp_overlap 387122, overlap 387123 TCCCAAAAGAAAAAA CCGC CAA GCGG AGTGCATTGACGGTT TERM 350 387208 - 387222 + T 75 -5 -4.8622 | overlap 387209 ACTCTCCGCACCTGA TCTGAA ATA TTCAGG TTTTTGGTTCAAACG TERM 351 387284 - 387298 + T 77 -10 -3.53444 | ATATGAATCACTTTA CCCCAA ATT TTGGGG TTTGCAAGCACCTCA Pnec_0435 387800 - 387333 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pnec_0436 388751 - 387834 - | polysaccharide deacetylase TERM 352 388259 - 388247 - G 75 -6.3 -4.53419 | CATCAGAAGAATAAA CAATG CCC CATTG ATCAAGTTGTTCAAA Pnec_0437 389820 - 388774 - | NAD-dependent epimerase/dehydratase TERM 353 389240 - 389250 + g 72 -5.4 -4.39568 | TGAGTCACTACGCGG GAAG AGC CTTC TTTTGGTGTGTAGAT Pnec_0438 390737 - 389868 - | formyl transferase domain protein Pnec_0439 391700 - 390738 - | glycosyl transferase family 2 TERM 354 390890 - 390873 - G 86 -11.3 -3.67864 | GAAGGTAAGTGCAAA GAGGGTG AAAA CACCCTC AACCTCAGCGCCTAG TERM 355 391489 - 391472 - G 80 -6.3 -4.87803 | gap 1 TACTGTGAAATAAAA CCGCACGT GTA ACGT-CGG GGCGTAATTCCACTT Pnec_0440 392908 - 391742 - | Glutamine--scyllo-inositol transaminase Pnec_0441 394611 - 392920 - | glycosyl transferase family 39 Pnec_0442 394988 - 394611 - | protein of unknown function DUF498 TERM 356 395274 - 395288 + H 75 -8.6 -3.72576 | opp_overlap 395287 GCTTCAGCCTATTCT GATTCC AAG GGAATC TTTGCTGCGCGCAAA Pnec_0444 395434 - 396321 + | aminotransferase class I and II Pnec_0445 396318 - 397628 + | Homoserine dehydrogenase Pnec_0446 397638 - 399080 + | threonine synthase Pnec_0447 399107 - 399751 + | MoeA domain protein domain I and II Pnec_0449 400278 - 400418 + | molybdopterin converting factor subunit 1 Pnec_0450 400411 - 400938 + | molybdopterin biosynthesis MoaE protein TERM 357 402371 - 402386 + T 100 -10.4 -5.19879 | opp_overlap 402368 402371 TGCATAGTAAATTGA CCACCC TCAT GGGTGG TTTTTGTCTTTAAAG TERM 358 402386 - 402371 - T 71 -10.4 -2.69601 | opp_overlap 402371, overlap 402368 TGCATAGTAAATTGA CCACCC TCAT GGGTGG TTTTTGTCTTTAAAG Pnec_0452 402631 - 402377 - | Excinuclease ABC C subunit domain protein TERM 359 402779 - 402797 + G 72 -8.8 -3.64703 | opp_overlap 402771 TTCAAGAGGCTCTTA GCGAGGCT CAA AGCATCGC TTTCGCTAAAGACAA Pnec_0453 402736 - 405339 + | ATP-dependent chaperone ClpB TERM 360 406146 - 406158 + F 79 -9.1 -3.9578 | opp_overlap 406144 AAGTCTGCAATCATT TGCGC CGA GCGCA TTGTTTGCGATCTAT TERM 361 406979 - 406962 - f 86 -9.9 -4.30014 | opp_overlap 406973, overlap 406977 CGCAGCAATTCAAAA GGATTGG GATA CCAATCC ACGTTGGAAGGGTAT TERM 362 408259 - 408308 + F 75 -8.6 -3.85389 | gap 1, opp_overlap 408258 408275, overlap 408263 408264 ATAATGTGCTAATAC TGCCG-CGGCACCTAAATTACCC CATAA GGGTGACTTAGGTGCCGTCTTCG TTTACATTCTTCCCA TERM 363 408263 - 408304 + F 100 -14.6 -3.58779 | gap 1, opp_overlap 408258 408275, overlap 408259 408264 TGTGCTAATACTGCC G-CGGCACCTAAATTACCC CATAA GGGTGACTTAGGTGCCGTC TTCGTTTACATTCTT TERM 364 408264 - 408302 + F 100 -18.3 -3.3568 | opp_overlap 408258 408275, overlap 408263 408259 GTGCTAATACTGCCG CGGCACCTAAATTACCC CATAA GGGTGACTTAGGTGCCG TCTTCGTTTACATTC Pnec_0457 408323 - 408763 + | histidine triad (HIT) protein Pnec_0458 408875 - 409096 + | hypothetical protein Pnec_0459 409139 - 409408 + | hypothetical protein Pnec_0460 409516 - 409737 + | hypothetical protein Pnec_0461 409915 - 410625 + | hypothetical protein TERM 365 410668 - 410648 - T 83 -12.5 -3.02144 | opp_overlap 410636 410649 CCAGTTTGGGCAATA TGCCCCACC TAT GGTGGGGCT TTTTTAACAGAAATT TERM 366 410649 - 410667 + T 100 -16 -5.00884 | opp_overlap 410648, overlap 410636 CAGTTTGGGCAATAT GCCCCACC TAT GGTGGGGC TTTTTTAACAGAAAT Pnec_0462 411116 - 410685 - | Domain of unknown function DUF1841 Pnec_0463 411763 - 411083 - | endonuclease III Pnec_0464 412446 - 411760 - | electron transport complex, RnfABCDGE type, B subunit TERM 367 412498 - 412475 - R 82 -10.4 -4.09511 | opp_overlap 412475, overlap 412480 AAGATCTTCTTAAAA TTAAAGGCTC CGAA GAGCCCTTAA TTTATGCAGACTTGG TERM 368 412475 - 412498 + r 72 -8.2 -3.87869 | opp_overlap 412475 412480 AAGATCTTCTTAAAA TTAAAGGCTC CGAA GAGCCCTTAA TTTATGCAGACTTGG TERM 369 412493 - 412480 - R 76 -8.1 -4.19735 | opp_overlap 412475, overlap 412475 CTTCTTAAAATTAAA GGCTC CGAA GAGCC CTTAATTTATGCAGA Pnec_0465 413780 - 412500 - | polyhydroxyalkanoate depolymerase, intracellular Pnec_0466 415011 - 413812 - | Aspartate transaminase Pnec_0467 415171 - 417327 + | excinuclease ABC, B subunit TERM 370 417361 - 417381 + F 77 -9.7 -3.69069 | opp_overlap 417361 417360 GATTTTTGGGATAAT TCCCGAGCA GAT TGCTAGGGA TTATGTTAAAGTTGA Pnec_0468 417464 - 418033 + | transcriptional regulator, BadM/Rrf2 family TERM 371 418701 - 418688 - g 70 -5.3 -4.43501 | AATTGATTTAGAAAA GATCA AAGT TGATC TCATGAGTTTTTCTG Pnec_0469 418062 - 419321 + | cysteine desulfurase IscS Pnec_0470 419351 - 419737 + | FeS cluster assembly scaffold IscU Pnec_0471 419759 - 420082 + | iron-sulfur cluster assembly protein IscA TERM 372 420502 - 420527 + GF 73 -8.9 -3.54984 | opp_overlap 420501 420500, overlap 420499 420503 GCGCCAAAAATTATG AGCGCGCAGCA GAGC TGCTGCGCGGG TTACTCTTTATTGAT TERM 373 420503 - 420526 + GF 82 -12.4 -2.71906 | opp_overlap 420501 420500, overlap 420502 420499 CGCCAAAAATTATGA GCGCGCAGCA GAGC TGCTGCGCGG GTTACTCTTTATTGA Pnec_0472 420048 - 420587 + | co-chaperone Hsc20 TERM 374 421654 - 421675 + G 82 -7.3 -4.77036 | ACCCGTATGCCCAAT GTTCAGCGA GCTG TAGCTGAAC TTTTTGGTACTCAAC Pnec_0473 420616 - 422481 + | Fe-S protein assembly chaperone HscA Pnec_0474 422519 - 422857 + | ferredoxin, 2Fe-2S type, ISC system TERM 375 423119 - 423130 + T 71 -4.4 -4.73388 | overlap 423113 423112 AGGGTGGGGCCTTTG TACC AAGG GGTA TTTTTGCTGGCAGTT Pnec_0476 424681 - 423758 - | Sulfate adenylyltransferase Pnec_0477 425295 - 424717 - | Phosphoadenylyl-sulfate reductase (thioredoxin) Pnec_0478 425445 - 425338 - | adenylylsulfate reductase, thioredoxin dependent Pnec_0479 425837 - 425442 - | protein of unknown function DUF81 TERM 376 425824 - 425836 + g 72 -6.3 -4.31329 | overlap 425816 GAAGATATTTTGGAT TGGAT TGA ATCCA TTTTAGAATTTTTGC Pnec_0480 426234 - 425875 - | protein of unknown function DUF81 Pnec_0481 426369 - 426250 - | hypothetical protein Pnec_0482 427302 - 426526 - | oxidoreductase FAD/NAD(P)-binding domain protein TERM 377 426610 - 426620 + g 74 -5.4 -4.67048 | GCCTCTGGCATCGAG CATC TCC GATG TTTCTTTTAGCATAG TERM 378 427613 - 427623 + G 74 -5.4 -4.67968 | AAGGGTTGGTTATCT TAGC ATC GCTA TTTCTTGTTTGTTAG Pnec_0483 427473 - 427961 + | Disulphide bond formation protein DsbB Pnec_0484 428062 - 429036 + | cysteine synthase A TERM 379 429067 - 429092 + T 82 -10.5 -4.03234 | opp_overlap 429072, overlap 429072 ATTAAGTTAGCAATA AAAAAGGCACC CTAG GGTGCCTTTTG TTTATATCGGAAGCA TERM 380 429087 - 429072 - T 100 -10.4 -5.5112 | opp_overlap 429067 429072 GTTAGCAATAAAAAA GGCACC CTAG GGTGCC TTTTGTTTATATCGG TERM 381 429072 - 429087 + T 93 -10.4 -5.05113 | opp_overlap 429072, overlap 429067 GTTAGCAATAAAAAA GGCACC CTAG GGTGCC TTTTGTTTATATCGG Pnec_0485 430653 - 429109 - | lysyl-tRNA synthetase Pnec_0486 431715 - 430666 - | peptide chain release factor 2 Pnec_0487 433557 - 431752 - | single-stranded-DNA-specific exonuclease RecJ TERM 382 432883 - 432899 + g 78 -5.1 -5.01553 | overlap 432884 432885 AAGATCTAAAAGATT TTCAACC TTA GGTTGGG TTTTATTTGTAAATT Pnec_0488 434545 - 433565 - | hypothetical protein TERM 383 435318 - 435337 + G 71 -10 -3.24924 | overlap 435316 CAGCGCGCCCCGCAA GTCGCCAA TGAA TTGGCGGC TATTGTGCCTCAAGC TERM 384 435432 - 435421 - g 75 -3 -5.11836 | overlap 435422 AGACCGAAAAGAAAA TGAT GTTC ATCA TCCTAACGTTGATTA Pnec_0489 434592 - 435854 + | lipoprotein releasing system, transmembrane protein, LolC/E family Pnec_0490 435847 - 436572 + | ABC transporter related TERM 385 436706 - 436720 + GF 75 -8.6 -3.83205 | opp_overlap 436689 436705 436703 GGTCTATCAATATAG CCAAGA GAT TCTTGG TTTGGTCTACACCCT Pnec_0491 436545 - 437279 + | TatD-related deoxyribonuclease TERM 386 438450 - 438464 + F 70 -7 -4.07877 | overlap 438451 TTTGGTTGTCTTTTG GGGCGG TGG CCGCCA TTCTTTATGCAATGG TERM 387 438451 - 438463 + F 73 -10.5 -3.04244 | overlap 438450 TTGGTTGTCTTTTGG GGCGG TGG CCGCC ATTCTTTATGCAATG TERM 388 438707 - 438726 + F 70 -10 -2.64199 | gap 1, overlap 438706 ACGCCATTGGCAATC TCCGGG-GC TAT GCTCCCGGA ATTCATTGGTCGCTG Pnec_0493 438851 - 439660 + | DNA internalization-related competence protein ComEC/Rec2 Pnec_0494 439688 - 440059 + | hypothetical protein TERM 389 440083 - 440098 + F 91 -10.4 -4.72272 | opp_overlap 440094 CACAATCGTCTGAAG GCCCGA GAAA TCGGGC TTTTTAATGCCCAGA TERM 390 440124 - 440142 + F 83 -11.8 -3.20703 | opp_overlap 440124 CCAGAAAAGCAAAAA GCCCTTAA TAA TTAAGGGC TTAGTACATAATTCT TERM 391 440142 - 440124 - f 100 -11.8 -5.1417 | opp_overlap 440124 CCAGAAAAGCAAAAA GCCCTTAA TAA TTAAGGGC TTAGTACATAATTCT TERM 392 441185 - 441202 + F 71 -4.1 -4.81212 | overlap 441174 441180 CACTTTGGATTAAAG CCAATTC GTAT GGGTTGG TTTTATTGTGATGCC Pnec_0496 442331 - 442840 + | hypothetical protein Pnec_0497 442974 - 444242 + | DNA repair protein RadA Pnec_0498 445163 - 444267 - | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific Pnec_0499 446351 - 445200 - | succinyl-diaminopimelate desuccinylase TERM 393 445354 - 445344 - G 71 -6.8 -4.1552 | overlap 445345 GATCTTGGCAATAAA GCGA CCA TCGC TCGTGCCGCCAGTTG Pnec_0500 447188 - 446361 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Pnec_0501 447427 - 450885 + | chromosome segregation protein SMC Pnec_0502 450904 - 451962 + | ZipA FtsZ-binding region Pnec_0503 451972 - 453987 + | DNA ligase, NAD-dependent TERM 394 454405 - 454392 - g 71 -3.7 -4.7416 | opp_overlap 454391 454392 CGAAAATCCCAAAAA GGGCG AGGG CGCTC ATTTACACATTGATT Pnec_0504 454051 - 454542 + | NUDIX hydrolase Pnec_0506 457934 - 457098 - | methionine aminopeptidase, type I TERM 395 457977 - 457995 + H 76 -10.4 -3.27786 | opp_overlap 457992 TTTAGCTTATCATGA TTGCCTAA AAA TTAGGCAA TTACTGCGTTTTAGG TERM 396 458345 - 458335 - g 76 -4 -5.055 | opp_overlap 458335 TCAACTTGGAAAAAA CATT GCC AATG TTTCAGGACGCCCTG TERM 397 458387 - 458397 + G 82 -5.4 -5.12172 | ACAAGTTGCTGCTAA TCGT GGC ACGA TTTTATTTGTTGGTA Pnec_0507 458202 - 458951 + | ribosomal protein S2 TERM 398 459637 - 459647 + G 80 -6.8 -4.67607 | opp_overlap 459637 TTCTATTCAGAAGTA CCTC AAA GAGG TTTCTTTGTTGAACC Pnec_0508 458951 - 459835 + | translation elongation factor Ts TERM 399 459876 - 459913 + F 100 -15.1 -3.78022 | opp_overlap 459881, overlap 459881 CCGGCTGGTAATACC CAAAAGGGCATAGAAAC CTTA GTTTCTGTGCCCTTTTC TTTGATCCCTCTCAA TERM 400 459908 - 459881 - f 100 -12.8 -4.28254 | opp_overlap 459881 459876 TGGTAATACCCAAAA GGGCATAGAAAC CTTA GTTTCTGTGCCC TTTTCTTTGATCCCT TERM 401 459881 - 459908 + F 100 -15 -4.9448 | opp_overlap 459881, overlap 459876 TGGTAATACCCAAAA GGGCATAGAAAC CTTA GTTTCTGTGCCC TTTTCTTTGATCCCT Pnec_0509 460022 - 460732 + | uridylate kinase Pnec_0510 460744 - 461304 + | ribosome recycling factor Pnec_0511 461330 - 462103 + | undecaprenyl diphosphate synthase TERM 402 462345 - 462368 + G 87 -9.6 -4.2704 | opp_overlap 462351 GTTTTTGCTTGGCAT GCAAAATGCC TCCT GGCAGTTTGC TTTATTGCTGCTAGC Pnec_0512 462130 - 462957 + | phosphatidate cytidylyltransferase Pnec_0513 462957 - 464153 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Pnec_0514 464141 - 465274 + | membrane-associated zinc metalloprotease TERM 403 466479 - 466467 - g 72 -4.8 -4.67353 | TGACTTATCTAAAAA GCGT TTAGG ACGC TTGGGCTATTTTACT Pnec_0515 465271 - 467616 + | outer membrane protein assembly complex, YaeT protein TERM 404 467854 - 467835 - g 80 -12.2 -3.09718 | opp_overlap 467832, overlap 467823 467832 GAAGCGTCAAAATGA TTTGCGCG ATAG CGCGCAAA GAATTAAGTCTGCGG Pnec_0516 467635 - 468162 + | outer membrane chaperone Skp (OmpH) Pnec_0517 468168 - 469235 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Pnec_0518 469282 - 469731 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Pnec_0519 469731 - 470528 + | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Pnec_0520 470539 - 471744 + | lipid-A-disaccharide synthase Pnec_0521 471741 - 472334 + | Ribonuclease H Pnec_0522 472349 - 473173 + | tRNA/rRNA methyltransferase (SpoU) Pnec_0523 473411 - 473196 - | protein of unknown function DUF299 Pnec_0524 473806 - 473408 - | protein of unknown function DUF299 Pnec_0525 474075 - 473803 - | hypothetical protein TERM 405 473849 - 473880 + g 72 -5.3 -4.58685 | gap 2 CCCATATTTAGGGCC GCCTGACTGATGCTG CTAA CAGCATCA-T-GGGC TTTTTCAGCACGTTT Pnec_0526 474588 - 474136 - | SsrA-binding protein Pnec_0527 474614 - 475045 + | cyclase/dehydrase Pnec_0528 475038 - 475388 + | protein of unknown function UPF0125 Pnec_0529 475415 - 476878 + | inosine-5'-monophosphate dehydrogenase TERM 406 477910 - 477895 - g 75 -2.6 -5.18355 | gap 1 TGGAAAAATCAAAAA TGCTAAG TGG CTT-GCA CAGGGAACCATCTAT Pnec_0530 476903 - 478510 + | GMP synthase, large subunit Pnec_0531 478541 - 479338 + | protein of unknown function DUF455 TERM 407 479379 - 479422 + F 73 -4.8 -4.62336 | opp_overlap 479391, overlap 479392 TTATCCCACCGATGA CTCAGCTGA-ATACGCCGTA CCCGTC TACGGCTTATCTCA-CTGGG TTTTTGAGATCGCGT Pnec_0533 480808 - 481224 + | radical SAM domain protein Pnec_0534 481301 - 481654 + | hypothetical protein Pnec_0535 481758 - 482003 + | hypothetical protein TERM 408 482028 - 482038 + G 85 -6.8 -5.06816 | AAAAATTCTTGCTGC TGGC GTT GCCA TTTTTCTTGGCCGCT Pnec_0536 481979 - 482140 + | hypothetical protein Pnec_0537 482204 - 482302 + | hypothetical protein Pnec_0538 482347 - 482706 + | hypothetical protein TERM 409 482707 - 482733 + F 73 -10.2 -3.00022 | opp_overlap 482704 482707 482713, overlap 482711 482713 ATCTCCTGGAAATAA GCAAAACGCTTA AAA TAGGCGTATTGC TATGTATACCGTAAA TERM 410 482733 - 482707 - f 72 -8 -3.90922 | opp_overlap 482707 482711 482713, overlap 482704 482713 ATCTCCTGGAAATAA GCAAAACGCTTA AAA TAGGCGTATTGC TATGTATACCGTAAA TERM 411 482854 - 482864 + G 71 -6.8 -4.06179 | ACGCGAAGAGGATCG TGGC GCG GCCA TTTGTCAGTTTTGCG Pnec_0539 482735 - 483331 + | Radical SAM domain protein Pnec_0540 483387 - 483518 + | hypothetical protein Pnec_0541 483520 - 483783 + | 6-pyruvoyl tetrahydropterin synthase and hypothetical protein Pnec_0542 483845 - 484303 + | CMP/dCMP deaminase zinc-binding Pnec_0543 484300 - 485244 + | Muramoyltetrapeptide carboxypeptidase Pnec_0544 485322 - 485669 + | SOUL heme-binding protein TERM 412 485930 - 485917 - T 71 -2.3 -5.06816 | opp_overlap 485918, overlap 485918 ACTCTTTAATAAAAA CTGGC CACC GCCAT TGATACCTAGAGCCT Pnec_0547 487554 - 486769 - | phosphoesterase PA-phosphatase related Pnec_0548 488819 - 487560 - | glycosyl transferase family 9 Pnec_0549 489880 - 488837 - | hypothetical protein Pnec_0550 491418 - 489907 - | 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein TERM 413 491734 - 491724 - g 72 -8.2 -3.75051 | overlap 491722 TATCAAGGCAAAACA GCGC TCA GCGC AAATTCCAGAACATC Pnec_0551 491466 - 492263 + | hypothetical protein Pnec_0552 492886 - 492290 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC Pnec_0553 493004 - 492879 - | heavy metal translocating P-type ATPase TERM 414 493326 - 493313 - H 71 -8.1 -3.78087 | AATTAAAATTCCAAA GCGTG CTGC CACGC CAGTTCCTGCCATAA Pnec_0557 494628 - 494798 + | heavy metal transport/detoxification protein Pnec_0558 494865 - 495512 + | protein of unknown function DUF47 Pnec_0559 495593 - 496534 + | phosphate transporter TERM 415 496640 - 496622 - f 82 -7.5 -4.62102 | opp_overlap 496622 AGAAAAATACTAAAA CCTAGAA TCCAC TTCTAGG TTTATTCATATTAGG TERM 416 496622 - 496640 + F 77 -7.5 -4.33153 | opp_overlap 496622 AGAAAAATACTAAAA CCTAGAA TCCAC TTCTAGG TTTATTCATATTAGG TERM 417 496773 - 496759 - g 76 -4.3 -5.04265 | AAAAAATATTAAAAA TCTTC GTGTA GAAGA AGGTGATATTTCCTT Pnec_0560 496664 - 497752 + | protein of unknown function DUF59 TERM 418 497883 - 497871 - g 78 -6.3 -4.56883 | TTAATAGCAAACAAA GCAAT TTC ATTGC AGGTCAGTTTCTTGG Pnec_0561 497777 - 497944 + | hypothetical protein Pnec_0562 498022 - 498249 + | hypothetical protein Pnec_0563 498489 - 498641 + | hypothetical protein Pnec_0564 498626 - 499384 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Pnec_0565 499384 - 499620 + | hypothetical protein Pnec_0566 499668 - 500186 + | formate dehydrogenase, gamma subunit Pnec_0567 500935 - 500228 - | ABC transporter related TERM 419 500294 - 500310 + g 78 -5.8 -4.83243 | gap 1, opp_overlap 500294, overlap 500294 AGGATTTTCAAAGAA GGGG-CC TGCG GGTCCCC TTTCTTTTATCTGGC TERM 420 500647 - 500661 + g 73 -4.2 -4.73388 | overlap 500643 500640 CATCAACGTCTCGAA CCATTC GTA GATTGG TTTTTGCTGAAGCTT Pnec_0568 501110 - 500928 - | binding-protein-dependent transport systems inner membrane component Pnec_0569 501611 - 501192 - | binding-protein-dependent transport systems inner membrane component TERM 421 502319 - 502307 - g 73 -7.7 -4.07568 | GTCCGTGGTTTAAAA GTGCA TTC TGCAC AAATTTTGCATGAAT Pnec_0570 501635 - 502387 + | Endonuclease/exonuclease/phosphatase TERM 422 503708 - 503720 + G 72 -6.3 -4.22414 | AAATTAGTCTGATTG TCTAC AAC GTAGA TTTCTGTATTAAATT Pnec_0571 502384 - 503859 + | phospholipase D/Transphosphatidylase Pnec_0572 504444 - 503890 - | L-carnitine dehydratase/bile acid-inducible protein F Pnec_0573 504906 - 504556 - | acyl-CoA dehydrogenase domain protein Pnec_0574 505109 - 505612 + | hypothetical protein Pnec_0575 505743 - 506519 + | 3-hydroxybutyrate dehydrogenase TERM 423 506567 - 506546 - f 89 -14.5 -3.06796 | opp_overlap 506546 CCTGATTTCATCGAA TGCCGGCAA GTTC TTGCCGGCA TTTTGTTTGTGTTGC TERM 424 506546 - 506567 + F 100 -14.5 -5.10033 | opp_overlap 506546 CCTGATTTCATCGAA TGCCGGCAA GTTC TTGCCGGCA TTTTGTTTGTGTTGC Pnec_0576 506713 - 507306 + | hypothetical protein TERM 425 507323 - 507351 + T 100 -12.5 -3.72695 | opp_overlap 507329 507331, overlap 507329 TGCAGCTAGCTTCAT AAAAAAGGCCCGC AAT GCGGGTCTTTTTG TTTGCTCAGCCCAAT TERM 426 507329 - 507345 + T 100 -11.5 -5.33405 | opp_overlap 507329 507331, overlap 507323 TAGCTTCATAAAAAA GGCCCGC AAT GCGGGTC TTTTTGTTTGCTCAG TERM 427 507345 - 507329 - T 100 -9.3 -5.252 | opp_overlap 507323 507329, overlap 507331 TAGCTTCATAAAAAA GGCCCGC AAT GCGGGTC TTTTTGTTTGCTCAG TERM 428 507343 - 507331 - T 72 -10.5 -2.83915 | opp_overlap 507329 507323, overlap 507329 GCTTCATAAAAAAGG CCCGC AAT GCGGG TCTTTTTGTTTGCTC Pnec_0577 507744 - 507319 - | hypothetical protein TERM 429 507950 - 507920 - g 72 -8.2 -3.66178 | opp_overlap 507920 GCCCTTAAGGGGAAA GTCACCTTGCCAGC CAA GATGGCAGAGCGAC TCCTATTGCTGGAGG Pnec_0578 507803 - 508777 + | NADH:flavin oxidoreductase/NADH oxidase TERM 430 508810 - 508835 + T 100 -9.1 -5.80817 | opp_overlap 508810 GAGATGTTAAGTGAA TAATCCTGTCT TAGT AGGCGGGATTA TTTTTTTGTCTTCGG Pnec_0579 509010 - 508801 - | hypothetical protein TERM 431 508979 - 508989 + g 72 -3.2 -5.02074 | overlap 508960 508959 ACTGTCCAGCCTATG GTCA TCT TGGC TTTTTTAGAGAGTGG Pnec_0580 509309 - 509007 - | cytochrome b561 Pnec_0581 509439 - 509314 - | cytochrome b561 TERM 432 509492 - 509472 - R 81 -9.9 -3.97947 | TGGATTCATCATAAA TGTTAATGA ATC TCATTAACA TTAGCAACCATGGGG Pnec_0582 510121 - 509537 - | hypothetical protein Pnec_0583 510225 - 510133 - | hypothetical protein Pnec_0584 511595 - 510447 - | protein of unknown function DUF6 transmembrane TERM 433 510672 - 510646 - G 75 -11 -3.05384 | opp_overlap 510646 CTCCGCGCCATCGAA GTCATCAGATTT TTA AGATCTGATGAC TTTTTTCTTGGGACA TERM 434 510646 - 510672 + g 100 -13.2 -5.4505 | opp_overlap 510646 CTCCGCGCCATCGAA GTCATCAGATTT TTA AGATCTGATGAC TTTTTTCTTGGGACA Pnec_0585 512486 - 511602 - | carbohydrate kinase, YjeF related protein TERM 435 512348 - 512334 - G 77 -11.4 -3.12351 | overlap 512337 TGCGCCTAGATGCAA GCAGGC ATT GCCTGC CAAAATGAGGGCGCC TERM 436 513519 - 513503 - R 74 -9.4 -3.4174 | opp_overlap 513503, overlap 513498 513513 ATAAAAATAATCCAA GCGCAG TAGAT CTGCGC TTTATTGCAGATGTA TERM 437 513503 - 513519 + r 84 -9.4 -4.17556 | opp_overlap 513498 513503 513513 ATAAAAATAATCCAA GCGCAG TAGAT CTGCGC TTTATTGCAGATGTA Pnec_0588 514602 - 513979 - | extracellular solute-binding protein family 3 TERM 438 514833 - 514818 - R 100 -11.8 -5.626 | opp_overlap 514818 GATGGGACAAAAAAA CCGCGG CGGG CCGCGG TTTTATATGCAAAAG TERM 439 514818 - 514833 + r 100 -11.8 -4.52589 | opp_overlap 514818 GATGGGACAAAAAAA CCGCGG CGGG CCGCGG TTTTATATGCAAAAG TERM 440 514861 - 514894 + r 80 -5.9 -5.14645 | overlap 514863 AAGAAGAGATTACTT TTTAGCGTCAGCTGC AGGA GCAGCTGACGGAGCA TTTTTCTTGGCTTCT Pnec_0589 515067 - 514855 - | hypothetical protein Pnec_0590 515315 - 515842 + | hypothetical protein Pnec_0591 515897 - 516409 + | hypothetical protein TERM 441 516910 - 516928 + G 72 -8.8 -3.58859 | overlap 516891 CGGTTTGCCAGTGCC GGCCATTG GCG CAACGGCC TATTCTTTAGATATT Pnec_0592 516413 - 517630 + | HI0933 family protein Pnec_0593 517738 - 517637 - | hypothetical protein Pnec_0594 518115 - 518816 + | hypothetical protein Pnec_0596 519343 - 519858 + | hypothetical protein TERM 442 519913 - 519894 - T 75 -9.2 -3.65046 | opp_overlap 519894 GTCGCATTCCAAGAA CCGCCTCA GATT TGGGGCGG TTTTTATTGCCAGCC TERM 443 519894 - 519913 + T 100 -11.4 -5.06414 | opp_overlap 519894 GTCGCATTCCAAGAA CCGCCTCA GATT TGGGGCGG TTTTTATTGCCAGCC Pnec_0597 520138 - 519917 - | hypothetical protein Pnec_0598 520676 - 520969 + | fumarylacetoacetate (FAA) hydrolase Pnec_0601 523451 - 522624 - | hypothetical protein Pnec_0602 523607 - 523930 + | hypothetical protein TERM 444 523985 - 523944 - T 100 -16.1 -2.81312 | opp_overlap 523955, overlap 523955 AATCCAGGCATCAGA CTGATCAAAAAGCCTAGCT TGCG AGCTAGGCTTTTTGATTTG TGTAGGCAACGGAAT TERM 445 523974 - 523955 - T 100 -12.2 -4.76041 | opp_overlap 523955, overlap 523944 CAGACTGATCAAAAA GCCTAGCT TGCG AGCTAGGC TTTTTGATTTGTGTA TERM 446 523955 - 523974 + T 100 -12.2 -5.07011 | opp_overlap 523944 523955 CAGACTGATCAAAAA GCCTAGCT TGCG AGCTAGGC TTTTTGATTTGTGTA Pnec_0603 524298 - 524008 - | protein of unknown function DUF1330 TERM 447 525530 - 525515 - R 89 -2.6 -5.63103 | GTTTAATCAAAAAAA GTAATT AAGA AACTAC AAGAGGCTTTTCTTG Pnec_0606 526580 - 525519 - | selenide, water dikinase Pnec_0607 527027 - 526614 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Pnec_0608 527591 - 527160 - | hypothetical protein Pnec_0609 528193 - 527759 - | thioesterase superfamily protein Pnec_0610 528463 - 528206 - | GCN5-related N-acetyltransferase Pnec_0611 528876 - 529373 + | hypothetical protein TERM 448 529411 - 529426 + T 100 -6 -5.5112 | opp_overlap 529411, overlap 529404 CGCTAGATGAAAAAA GCCCGC ATAT GCGAGC TTTTTTATTGCTGCG TERM 449 529426 - 529411 - T 91 -8.2 -5.21709 | opp_overlap 529411 529404 CGCTAGATGAAAAAA GCCCGC ATAT GCGAGC TTTTTTATTGCTGCG Pnec_0612 529682 - 529458 - | TOBE domain protein Pnec_0614 531099 - 530350 - | putative sulfate transport system substrate-binding protein Pnec_0615 531186 - 531305 + | hypothetical protein TERM 450 531409 - 531435 + G 80 -6.7 -4.90917 | CGCACTAAAGGGCAT GGTTCTAAGTT GACTG AATTTGGAACC TTTTTAATTCAATTT Pnec_0616 531379 - 531480 + | hypothetical protein TERM 451 531489 - 531504 + F 71 -4.7 -4.63218 | opp_overlap 531483 TATTTAAAGCATGAT GCTCA GTACCA TGAGC TTTTATTAAAAGAGA Pnec_0617 531580 - 531777 + | transcriptional regulator of molybdate metabolism, LysR family Pnec_0619 532221 - 532715 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Pnec_0620 532804 - 532992 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Pnec_0621 533712 - 533122 - | FMN-binding negative transcriptional regulator Pnec_0622 533821 - 534066 + | FeoA family protein TERM 452 534519 - 534542 + G 74 -10.4 -3.14468 | CAAATGAGCTCGGTT TGCCAGTACT TACC AGTATTGGCA TTCAGTCTAATGGCG Pnec_0623 534059 - 535972 + | ferrous iron transport protein B Pnec_0624 536176 - 536439 + | putative cytochrome c5 Pnec_0625 537318 - 536488 - | hypothetical protein TERM 453 536840 - 536830 - G 71 -6.8 -4.15044 | GCCCGCTTGAATAAA CAGC AAA GCTG CTGGCACGGTCTCAG Pnec_0626 537708 - 537854 + | hypothetical protein TERM 454 538272 - 538262 - T 79 -6.8 -4.65916 | GTGAGGCGAAGAAAA TGGG TCG CCCA TGGGATACGGGCAAA TERM 455 538468 - 538480 + T 72 -3.3 -5.00616 | opp_overlap 538468 538469 538471, overlap 538469 TTATTTACTCTAGAA CCAGG CGA CCTGA TTTTTTCAGGCACGC Pnec_0628 539421 - 538642 - | Enoyl-CoA hydratase/isomerase TERM 456 538761 - 538788 + g 95 -11.4 -4.68593 | gap 1, opp_overlap 538765 GTAAGTTGCTCTGGA GCAAGCGAGC-CA ATG TGAGCTTGCTTGC TTTTTGAGTGATAGG Pnec_0631 541183 - 542787 + | hypothetical protein TERM 457 543306 - 543296 - g 80 -6.8 -4.59773 | GTGGATTGGTAAAAA CGGT ATG ACCG TCACAGATGAAGAGC Pnec_0632 543072 - 543428 + | hypothetical protein Pnec_0633 543464 - 544054 + | membrane lipoprotein lipid attachment site Pnec_0634 544083 - 545165 + | hypothetical protein TERM 458 545185 - 545216 + T 73 -4.4 -4.88067 | gap 1 AAATTACACCTCTAC CGGCGGA-TGCAA CTTCTCA TAGCGCTCCGCCG TTTTTCTAAATAAAT Pnec_0635 546564 - 545173 - | MATE efflux family protein TERM 459 546257 - 546242 - G 79 -4 -5.13722 | overlap 546252 TTGAGTAAAACAAAA TAACCA AAAA TGGTCA GCCCCAGAGCTAGCC TERM 460 546273 - 546252 - G 72 -2.9 -5.07971 | opp_overlap 546266, overlap 546242 CAAAATAACCAAAAA TGGTCAGCC CCAG AGCTAGCCA AGCAGCTTGTCGAAC Pnec_0636 548286 - 546568 - | putative inner membrane transmembrane protein TERM 461 548309 - 548324 + r 73 -9 -3.49618 | opp_overlap 548309 GTTCAAAATAAAAAA GGCAGT AAAC ACTGCC TTCATTATCTCGCAG TERM 462 548324 - 548309 - R 100 -9 -5.79595 | opp_overlap 548309 GTTCAAAATAAAAAA GGCAGT AAAC ACTGCC TTCATTATCTCGCAG Pnec_0637 548723 - 548376 - | ribosomal protein L31 TERM 463 548413 - 548429 + g 85 -6.5 -5.26918 | overlap 548426 TTTTCAGCAGCTTTA GCTTCTG CAG CAGCAGC TTTTTTCTCAGCTGT TERM 464 548883 - 548825 - R 79 -9.2 -3.91541 | gap 3, overlap 548827 548828 548848 548879 CCATGAAATCAACAA CACGCT-ATTTTGGGGTCCAAAAAGGGCT AAAC AGCCC-TC-TGGACCCCAAAATTAGCCTC CGCGACGCATTAGGT TERM 465 548881 - 548827 - R 88 -11.8 -3.53697 | gap 3, overlap 548825 548828 548848 548879 ATGAAATCAACAACA CGCT-ATTTTGGGGTCCAAAAAGGGCT AAAC AGCCC-TC-TGGACCCCAAAATTAGCC TCCGCGACGCATTAG TERM 466 548880 - 548828 - R 93 -15.3 -2.71134 | gap 3, overlap 548827 548825 548848 548879 TGAAATCAACAACAC GCT-ATTTTGGGGTCCAAAAAGGGCT AAAC AGCCC-TC-TGGACCCCAAAATTAGC CTCCGCGACGCATTA TERM 467 548861 - 548848 - R 82 -8.1 -4.56597 | overlap 548828 548827 548825 TTTGGGGTCCAAAAA GGGCT AAAC AGCCC TCTGGACCCCAAAAT Pnec_0638 550138 - 548876 - | transcription termination factor Rho TERM 468 550390 - 550364 - R 100 -13.1 -4.64657 | opp_overlap 550367 550369 550388, overlap 550354 GTAAAGCGGTAAAAA CCACAGGCTCA GCGGA TGAACCTGTGG TCTGAGACTATTTAC Pnec_0639 550728 - 550402 - | thioredoxin TERM 469 553492 - 553464 - g 74 -3.8 -4.9218 | overlap 553468 GATTGATTACAAAAA TCAACGCTTTGA AAAAG TCAAAGCGCGGG CTGAACATATCTTGG TERM 470 553488 - 553468 - g 80 -9.8 -3.89607 | overlap 553464 GATTACAAAAATCAA CGCTTTGA AAAAG TCAAAGCG CGGGCTGAACATATC TERM 471 553651 - 553638 - g 79 -8.1 -4.2679 | CAAGGGTGAGCAAAA GGCTG TACG CAGCC AAGAGGTAGCCGATA Pnec_0640 550837 - 553812 + | inactivated superfamily I helicase-like protein TERM 472 554626 - 554591 - g 71 -7 -4.07568 | opp_overlap 554593, overlap 554593 CCGCTGTTTTCAAAA TAGTAGCGCAAAAGAT AGCG ATCTTTTGCAATACTT GTTGCCGGCCATTGC TERM 473 554624 - 554593 - g 75 -9.6 -3.63744 | opp_overlap 554593, overlap 554591 GCTGTTTTCAAAATA GTAGCGCAAAAGAT AGCG ATCTTTTGCAATAC TTGTTGCCGGCCATT TERM 474 554638 - 554662 + G 74 -11.5 -2.79183 | ACTTGTTGCCGGCCA TTGCCTGCAAA GAA TGTGCAGGCAA TGTGATGGAAGTCGC Pnec_0641 553821 - 557342 + | UvrD/REP helicase Pnec_0642 557634 - 557347 - | hypothetical protein TERM 475 557478 - 557501 + g 80 -6.8 -4.59089 | overlap 557480 TTTGCCAACCTTCGC CTTTGGATTT ATAA AAATCCAATG TTTCTTTATCAATTC TERM 476 557480 - 557499 + g 71 -8 -3.89305 | overlap 557478 TGCCAACCTTCGCCT TTGGATTT ATAA AAATCCAA TGTTTCTTTATCAAT Pnec_0643 557831 - 557974 + | hypothetical protein Pnec_0644 558437 - 560113 + | DNA polymerase III, subunits gamma and tau TERM 477 560116 - 560104 - f 77 -9.1 -3.72576 | opp_overlap 560093 560091 560112 CGGCGGCTCAGTAAA GCCTC TTT GAGGC GACCACTTTATACGA Pnec_0645 560180 - 560503 + | hypothetical protein Pnec_0646 560531 - 561145 + | recombination protein RecR Pnec_0647 561386 - 562804 + | Carbohydrate-selective porin OprB Pnec_0648 563015 - 564001 + | outer membrane efflux protein Pnec_0651 565203 - 565391 + | efflux transporter, RND family, MFP subunit TERM 478 565626 - 565607 - f 81 -10.8 -3.54741 | opp_overlap 565606 565603 565610 565618, overlap 565610 TACCATTCCGGTAAA GAATGCCT TGGC AGGCATTC CTGGTTTACAGGCAT TERM 479 568151 - 568170 + F 78 -5.8 -4.90302 | GTTTGGTATTGTCAT TCAAGATG GTGT CATTTTGA TTTCTTTTATTAATA TERM 480 568657 - 568701 + F 81 -3.4 -5.38958 | gap 1, overlap 568658 CTCGTTAACACTTTC ACGTC-CGCTCTCAATTCACC GAGT GGCGGGTGGTGAGCGCGACGG TTTTTCTTTATCAAT Pnec_0656 569289 - 569945 + | protein-L-isoaspartate O-methyltransferase Pnec_0657 569983 - 570741 + | Peptidase M23 TERM 481 570800 - 570820 + F 77 -9.7 -3.61889 | TATTGAAACCATTCC CGATGTAGC AGG GCTGCGTCG TTTGGAAGATTTTTC TERM 482 571439 - 571451 + F 72 -5.5 -4.52589 | TTGCCGTTTTCAGTT GCTAC GTG GTGGC TTTTCTCTCGAGGAA Pnec_0660 571567 - 572994 + | RNA methyltransferase, TrmA family TERM 483 573321 - 573306 - T 100 -11.8 -5.68438 | GTAGGAAATAAAAAA GGCGCC CGCA GGCGCC TTCAGGAAAATCACA Pnec_0661 574064 - 573363 - | protein of unknown function UPF0005 Pnec_0662 574324 - 574749 + | Nucleoside-diphosphate kinase TERM 484 574870 - 574859 - g 77 -7.2 -4.54727 | GGGGTTAAATGAAAA GCCC TTTA GGGC AAAGCAACTCATGCA TERM 485 575771 - 575802 + G 83 -13 -3.19157 | opp_overlap 575768 575769, overlap 575768 575774 575800 CCAACGCGTAAATGC CTTTGCCGGCATTC TGTT GGATGCCGGCATGG TTGCTACCGTTCGTA TERM 486 575774 - 575799 + G 93 -15.5 -2.79023 | opp_overlap 575768 575769, overlap 575768 575771 ACGCGTAAATGCCTT TGCCGGCATTC TGTT GGATGCCGGCA TGGTTGCTACCGTTC Pnec_0663 574827 - 575978 + | radical SAM enzyme, Cfr family TERM 487 577149 - 577165 + G 77 -9.3 -3.92641 | opp_overlap 577149, overlap 577151 CGGGAACGGGTGAAA CTCCGGC TGC GCCGGTG TTTGTGGATGGGGTT TERM 488 577165 - 577149 - g 72 -9.3 -3.57561 | opp_overlap 577149 577151 CGGGAACGGGTGAAA CTCCGGC TGC GCCGGTG TTTGTGGATGGGGTT TERM 489 577151 - 577163 + G 79 -10.5 -3.5511 | opp_overlap 577149, overlap 577149 GGAACGGGTGAAACT CCGGC TGC GCCGG TGTTTGTGGATGGGG Pnec_0664 576005 - 577273 + | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Pnec_0665 577306 - 578634 + | histidyl-tRNA synthetase Pnec_0666 578682 - 579341 + | hypothetical protein Pnec_0667 579341 - 580498 + | outer membrane assembly lipoprotein YfgL Pnec_0668 580495 - 581859 + | small GTP-binding protein Pnec_0669 582022 - 582264 + | RNA chaperone Hfq Pnec_0670 582501 - 582241 - | hypothetical protein TERM 490 582337 - 582350 + g 76 -8.1 -4.18494 | opp_overlap 582336 TTTTGCAGATAGCAT GGCTG AGCT CAGCC TTTTGGCTGGCAGTG TERM 491 582410 - 582420 + g 80 -6.8 -4.56367 | GTACGTAAAGGTAGG GCTG ATC CAGC TTTGTTTATAGGGTC Pnec_0671 582556 - 582834 + | GTP-binding protein, HSR1-related TERM 492 582865 - 582893 + F 72 -5.4 -4.49958 | gap 1, overlap 582868 TTTTCAGTTTCTTTG GTGGGATATACCA ATGC TGGTAAATCC-AC TTTATTTAATGCCCT TERM 493 583765 - 583739 - g 79 -2.9 -5.40072 | TTGGTGGCAAAAAAA TGCCTGGCGCA GCTAA TAAGCCAGCCA ATAAACCGAATAATG Pnec_0673 583486 - 584982 + | HflK protein TERM 494 585634 - 585608 - g 70 -10.8 -2.53271 | opp_overlap 585605, overlap 585607 585605 585617 GGAGTCTGACAAGAT TCGCGCAAACGC AGA ACGTCAGCGCGA CACTATTTTGGCGGA Pnec_0674 584982 - 585851 + | HflC protein TERM 495 586790 - 586800 + G 76 -2.4 -5.31519 | TTTGGGCGTCCACGT CCTG CCA CTGG TTTTTCTTTGGATCT Pnec_0675 585872 - 587035 + | tRNA synthetase class II (G H P and S) Pnec_0676 587097 - 588437 + | Adenylosuccinate synthase Pnec_0677 588492 - 588779 + | malate synthase G Pnec_0678 588782 - 589297 + | hypothetical protein Pnec_0679 589778 - 589401 - | hypothetical protein Pnec_0680 589934 - 590233 + | hypothetical protein TERM 496 590302 - 590290 - T 74 -3.3 -5.16841 | opp_overlap 590290 GTAGACCAATAAAAA GGCGA GAC TTGCC ATTTTCCCAATAACC Pnec_0681 590974 - 590387 - | amino acid permease-associated region TERM 497 591389 - 591370 - H 74 -2.2 -5.20333 | overlap 591374 TATTTATAACAAAAA TAGATATC TCCA GATATATA GACAAGGCATGTATT TERM 498 592407 - 592423 + G 73 -7.9 -4.15106 | opp_overlap 592406 592396 592407 592410, overlap 592397 GCAAGGGTCCAGAAG CTACGCG CTT CGCGCAG TTTTGCCCCTTACTG TERM 499 592663 - 592648 - g 76 -4.7 -4.87665 | CTTCATTGATAAAAA CAAGC ACCTTA GCTTG TATCGCGTACATGGT TERM 500 593609 - 593588 - g 83 -2.1 -5.69793 | overlap 593590 AGACCAAATAAAAAA GCCGCCCCT AAAA AGAGTCGCC CTGATAATAAGATTC Pnec_0682 591419 - 593803 + | ribonuclease R Pnec_0683 593853 - 594620 + | RNA methyltransferase, TrmH family, group 3 Pnec_0684 594635 - 594820 + | hypothetical protein Pnec_0685 595789 - 594821 - | transaldolase Pnec_0686 595883 - 596593 + | ribose 5-phosphate isomerase TERM 501 596632 - 596604 - T 100 -21.1 -4.7497 | opp_overlap 596604 596607 TTTAGGCATTAAAAA CAACCCGACGGGG TAT CCCCATCGGGTTG TTTTGCCATGGTTTA TERM 502 596604 - 596632 + T 100 -18.9 -4.18094 | opp_overlap 596604, overlap 596607 TTTAGGCATTAAAAA CAACCCGACGGGG TAT CCCCATCGGGTTG TTTTGCCATGGTTTA TERM 503 596607 - 596629 + T 100 -14.8 -4.20148 | opp_overlap 596604, overlap 596604 AGGCATTAAAAACAA CCCGACGGGG TAT CCCCATCGGG TTGTTTTGCCATGGT Pnec_0687 597104 - 596829 - | Fe(II) trafficking protein YggX Pnec_0688 598509 - 597145 - | amino-acid N-acetyltransferase TERM 504 598321 - 598299 - G 72 -6.2 -4.25256 | overlap 598300 CGTGTACCAAAACAA TCCGCATACC CAT GGCATGCAGC ATGGCGATATCTTCA TERM 505 598320 - 598300 - G 71 -9.7 -3.14672 | overlap 598299 GTGTACCAAAACAAT CCGCATACC CAT GGCATGCAG CATGGCGATATCTTC Pnec_0690 601927 - 602826 + | 40-residue YVTN family beta-propeller repeat protein TERM 506 602864 - 602885 + F 86 -7.9 -4.8622 | TATTCATACGTATTG CAGCCGTGC TTTT GCTTGGCTG TTTTTCATTGGGCGC Pnec_0694 604546 - 605415 + | putative transmembrane protein Pnec_0695 605520 - 606260 + | molybdopterin binding domain Pnec_0696 606353 - 606210 - | hypothetical protein TERM 507 606289 - 606263 - G 75 -11 -3.11768 | opp_overlap 606260, overlap 606261 CGATATCAGCTAAGA CTATTTGCACTA ATA TGGTGCAAATAG AGGTATTGGGGGCTG Pnec_0697 606466 - 607881 + | glutamine synthetase, type I TERM 508 607929 - 607948 + F 100 -13.6 -5.03145 | opp_overlap 607932 CGCAATTCGTTCAAG GGAGCAGC TTCG GCTGCTCC TTTTTTCCGACATTG Pnec_0699 609028 - 609420 + | response regulator receiver protein TERM 509 610072 - 610090 + F 73 -6 -4.36914 | CCAATGTGATTGGTG TCAGCG ATTTGCC CGCTGA TTTTGTCGCAGAAGC Pnec_0701 610384 - 611250 + | exodeoxyribonuclease III Xth Pnec_0702 613380 - 611242 - | Oligopeptidase A Pnec_0703 614288 - 613434 - | Methenyltetrahydrofolate cyclohydrolase Pnec_0704 614951 - 614307 - | two component transcriptional regulator, LuxR family Pnec_0705 615520 - 614987 - | histidine kinase Pnec_0707 616178 - 616606 + | arsenical-resistance protein TERM 510 616607 - 616621 + F 73 -5 -4.63928 | overlap 616609 ACGCTGCTGGCTTAG TGGCAT TCA ATGCTA TTTTTCAGGTGCTGT TERM 511 617824 - 617849 + G 71 -7.5 -3.86194 | overlap 617826 617838 ATGCTGGTGTAGGTT CAGCTAGCCAC TTGT GTGGCTTGCTC TTTATGAGCCACATT TERM 512 617826 - 617847 + G 75 -10.1 -3.51934 | overlap 617824 617838 GCTGGTGTAGGTTCA GCTAGCCAC TTGT GTGGCTTGC TCTTTATGAGCCACA Pnec_0709 617334 - 618320 + | hypothetical protein TERM 513 618347 - 618374 + T 100 -15.8 -3.86822 | opp_overlap 618338 618354, overlap 618354 GGAAATCGGTCTCAA TAAAAAACCGCC TATG GGCGGTTTTTTA TTTCTCGAAAACTTC TERM 514 618367 - 618354 - T 100 -9.5 -5.4505 | opp_overlap 618347 618354, overlap 618338 GGTCTCAATAAAAAA CCGCC TATG GGCGG TTTTTTATTTCTCGA TERM 515 618354 - 618367 + T 100 -9.5 -5.72622 | opp_overlap 618338 618354, overlap 618347 GGTCTCAATAAAAAA CCGCC TATG GGCGG TTTTTTATTTCTCGA Pnec_0710 620071 - 618416 - | ferredoxin-dependent glutamate synthase Pnec_0711 620326 - 620499 + | hypothetical protein Pnec_0712 620489 - 620719 + | hypothetical protein Pnec_0713 620765 - 621022 + | hypothetical protein TERM 516 621074 - 621058 - T 93 -13.7 -3.26842 | opp_overlap 621058, overlap 621051 621050 AAAAGAAGGTAGCAA GGGTGGC TAG GCCACCC TTTTTATTGGACGTC TERM 517 621058 - 621074 + T 100 -13.7 -5.07486 | opp_overlap 621058 621051 621050 AAAAGAAGGTAGCAA GGGTGGC TAG GCCACCC TTTTTATTGGACGTC TERM 518 621270 - 621250 - T 70 -2.5 -4.91873 | opp_overlap 621252, overlap 621252 CATATTAATTAAAAA GAGCGAG TGGGAAG CTCGCTT TAATGAAGGTTTGGT TERM 519 621519 - 621509 - T 81 -3.2 -5.4505 | CGCCTCAAGAAAAAA CTGG CAT CCAA ACTCTAAGTCCCATT TERM 520 622055 - 622038 - T 91 -11.3 -4.07568 | opp_overlap 622040 GCTGCTTGGTGAAAA GAGCCCA GTGT TGGGCTC TCATAGTTAGGACTC Pnec_0715 622980 - 622087 - | two component transcriptional regulator, LuxR family Pnec_0716 623332 - 622973 - | histidine kinase Pnec_0717 623758 - 623447 - | two component signal transduction sensor lacking kinase domain Pnec_0718 624505 - 623996 - | diguanylate cyclase Pnec_0719 624941 - 625258 + | hypothetical protein Pnec_0720 625300 - 625407 + | hypothetical protein TERM 521 625452 - 625467 + F 74 -4 -5.0133 | overlap 625454 CTACATGCAATCCCC TGGTAG ATAG CTACTA TTTTTTAAAAACCTC Pnec_0721 625503 - 625715 + | hypothetical protein Pnec_0722 625935 - 626333 + | hypothetical protein Pnec_0723 626367 - 626582 + | peptidase A24A-like protein Pnec_0725 627840 - 628415 + | hypothetical protein Pnec_0726 628415 - 628906 + | hypothetical protein Pnec_0727 628903 - 629253 + | hypothetical protein Pnec_0728 629548 - 629763 + | hypothetical protein Pnec_0729 629787 - 630128 + | hypothetical protein TERM 522 630134 - 630157 + F 73 -4.8 -4.6902 | gap 1, opp_overlap 630141, overlap 630141 CACTCCATAGGTAGA CAAAAATGAAT CAT ATTC-TTTTTG TTTTTAAAATTGTCC TERM 523 630141 - 630151 + F 100 -4 -5.61881 | opp_overlap 630141, overlap 630134 TAGGTAGACAAAAAT GAAT CAT ATTC TTTTTGTTTTTAAAA Pnec_0730 630308 - 630943 + | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein TERM 524 631255 - 631275 + G 76 -9.1 -3.76373 | opp_overlap 631259, overlap 631249 AAATCAACCTTTGCA TATAGCGCA AAT TGTGCTATA TTTGACTATTCAAAA TERM 525 631490 - 631507 + G 72 -9.1 -3.49048 | opp_overlap 631481 631479, overlap 631488 AGAAGACTGATAGCT GTGGTGC ACCG GCGCCAC TGTTATTAGTTCGGC Pnec_0731 631198 - 631554 + | hypothetical protein Pnec_0732 631571 - 632173 + | hypothetical protein TERM 526 632732 - 632717 - g 70 -9 -3.41527 | CAATTCCTATTACAA GTGCGA TTGT TCGCAC TGTCACCATGCCATT Pnec_0733 632419 - 634134 + | Fimbrial assembly family protein Pnec_0734 634144 - 635364 + | hypothetical protein Pnec_0735 635367 - 636896 + | type II and III secretion system protein Pnec_0736 636898 - 637044 + | hypothetical protein TERM 527 638316 - 638286 - f 90 -4.7 -5.47399 | overlap 638287 TTAAGCGTAAAAAAA TGTGAAGCTCATG CAGAT CATGAGCTCAACC AAGAAGATAGCTACG TERM 528 638315 - 638287 - f 72 -8.2 -3.87355 | overlap 638286 TAAGCGTAAAAAAAT GTGAAGCTCATG CAGAT CATGAGCTCAAC CAAGAAGATAGCTAC Pnec_0738 638332 - 638754 + | type II secretion system protein Pnec_0742 640365 - 640766 + | hypothetical protein Pnec_0743 640840 - 641928 + | dihydrouridine synthase DuS TERM 529 642089 - 642103 + F 86 -7.1 -5.09762 | opp_overlap 642084 642089 CTAAAGATATCAAAA GCTCC CAAGT GGAGC TTTTTCTATTACAGT TERM 530 642103 - 642089 - f 80 -7.1 -4.46493 | opp_overlap 642089, overlap 642084 CTAAAGATATCAAAA GCTCC CAAGT GGAGC TTTTTCTATTACAGT Pnec_0744 642317 - 642709 + | hypothetical protein Pnec_0745 643560 - 642847 - | gamma-glutamyltranspeptidase TERM 531 644230 - 644220 - R 72 -6.8 -4.19258 | opp_overlap 644208 644220 AGAGGGCAGTCAAAA TGGG GTG CCCA TTTAGCACAAGAGCT Pnec_0747 645492 - 644725 - | LrgB family protein TERM 532 644941 - 644923 - G 70 -5.2 -4.44667 | TGCGTTAAGAATAAA TGGCGCCA ATA TTGCACCA AATATTCCGGTGCTC Pnec_0748 645874 - 645470 - | hypothetical protein Pnec_0749 648420 - 645961 - | peptidase S45 penicillin amidase TERM 533 648587 - 648567 - H 72 -10.5 -2.90714 | overlap 648569 648582 TGAAATCGGTAGACA CAGCAGATT TAA AATCTGCCG ACTCAAAAAAGTCGT TERM 534 648585 - 648569 - H 71 -9.5 -3.00215 | overlap 648567 648582 AAATCGGTAGACACA GCAGATT TAA AATCTGC CGACTCAAAAAAGTC Pnec_0750 648723 - 649118 + | hypothetical protein Pnec_0751 649465 - 649142 - | Biopolymer transport protein ExbD/TolR TERM 535 649382 - 649412 + g 73 -11.2 -2.73441 | overlap 649381 649385 649402 AATAATCAGGAGCAC CAGCATGACGTCTA CCA TTGGCGTCATGTTG ATTTCAGCCATGATG TERM 536 649385 - 649409 + g 72 -9.3 -3.51708 | overlap 649382 649381 649402 AATCAGGAGCACCAG CATGACGTCTA CCA TTGGCGTCATG TTGATTTCAGCCATG Pnec_0752 650147 - 649542 - | MotA/TolQ/ExbB proton channel Pnec_0753 650845 - 650153 - | TonB family protein Pnec_0754 651648 - 650842 - | glutamate racemase TERM 537 651066 - 651081 + g 79 -2.6 -5.40072 | TGATGGATTCCCCGA GTAATT TGCG AATTGC TTTTTTTAAGAAGGG TERM 538 651134 - 651157 + g 79 -10.4 -3.53444 | overlap 651121 ATGGTGTCTGCTCCA GCATCTTGAA TCGG TTCGAGATGC TTTGCCAACAACTCA Pnec_0755 653213 - 651690 - | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit TERM 539 652600 - 652613 + g 83 -6.7 -4.95155 | ATCAACGATTCTTTT GCCAT GAGC ATGGC TTTTTCTGGTGTACC TERM 540 652904 - 652922 + g 70 -8.8 -3.35371 | TATTGTCTGGGTTTA GGTATGCG CGA CGCACACC TTCGTTCACCATGTC Pnec_0756 653393 - 655297 + | acetate--CoA ligase TERM 541 655462 - 655475 + F 95 -8.1 -5.46657 | opp_overlap 655462 CAAGTAGTCAAGAAA CCACC TTCG GGTGG TTTTTTATTGCCCTA TERM 542 655475 - 655462 - f 76 -8.1 -4.23045 | opp_overlap 655462 CAAGTAGTCAAGAAA CCACC TTCG GGTGG TTTTTTATTGCCCTA Pnec_0757 655786 - 656049 + | hypothetical protein Pnec_0758 656018 - 656770 + | putative arylsulfatase Pnec_0759 656767 - 657252 + | putative arylsulfatase Pnec_0760 657444 - 657554 + | YciI-like protein Pnec_0762 658823 - 659155 + | NADH dehydrogenase (quinone) TERM 543 659248 - 659222 - g 71 -7.5 -3.99407 | gap 1 ACAAATCCTAAAGAA CTTGAACTGCAA ACCG TTG-AGTTCAAG TTAGACGGCAAGACG Pnec_0763 659195 - 659308 + | formate dehydrogenase, alpha subunit Pnec_0764 659345 - 661003 + | L-aspartate oxidase TERM 544 661958 - 661944 - T 72 -5.8 -4.45945 | AGCGATGAAGCAAAA TTTTTC TAT GAAAAA GGTACGCCAACTTTG Pnec_0767 663198 - 662341 - | nicotinate-nucleotide pyrophosphorylase Pnec_0768 664400 - 663273 - | quinolinate synthetase complex, A subunit TERM 545 663407 - 663417 + g 81 -8.2 -4.37886 | overlap 663404 CTTCAATCAAGATCT CGCC AGA GGCG TTTTCTAGGCAATGC Pnec_0769 664546 - 664686 + | hypothetical protein Pnec_0771 665226 - 666158 + | polypeptide-transport-associated domain protein, ShlB-type Pnec_0772 666304 - 666717 + | hypothetical protein Pnec_0773 666701 - 666880 + | hypothetical protein TERM 546 667863 - 667817 - f 78 -8.7 -4.07885 | opp_overlap 667825, overlap 667825 CACTTTGGCTCAAAA CTCCAAAACTACAGCCACTGG TAAAG CGGGTGGCGGTAGTGTTGAAG TGGGTCTTGGTAGAA TERM 547 669009 - 669032 + G 71 -7.4 -3.88291 | CGATCAGCGCCAATG GCGCAAACGG TGGC TCTTTTGCGC TTTCTGCAAATAATG Pnec_0775 668579 - 669376 + | filamentous haemagglutinin family outer membrane protein TERM 548 669551 - 669576 + F 71 -8.5 -3.54543 | gap 1 GAAAAGTCGTTCTGT GGAG-TGATATT AAA AATATCAACTCC TTTACAAAAGTACAT TERM 549 670952 - 670940 - f 70 -9.1 -3.14931 | opp_overlap 670939 670938, overlap 670949 TTGATTTCGCACCAA GCGCT ACA AGCGC AATTACTATTAATAA Pnec_0777 672207 - 672749 + | hypothetical protein Pnec_0778 672927 - 673547 + | filamentous haemagglutinin family outer membrane protein Pnec_0779 673559 - 673939 + | hypothetical protein Pnec_0780 673942 - 674265 + | hypothetical protein Pnec_0781 675647 - 674262 - | Phosphomannomutase Pnec_0782 677180 - 675690 - | Glucose-6-phosphate isomerase TERM 550 676961 - 676946 - G 70 -4.7 -4.45544 | TGCCATCAACCAAAA CTGGA GATTTA TCCAG ATTGCGCAGGGCAGA TERM 551 678604 - 678617 + H 100 -9.5 -6.25578 | opp_overlap 678601 678604 AATCGTTACCAAGGA CCGCC TACG GGCGG TTTTTTTTATTTAGT Pnec_0784 678822 - 679496 + | multiple antibiotic resistance (MarC)-related protein TERM 552 681471 - 681457 - T 83 -7.2 -4.8269 | opp_overlap 681467 GAGAATTATCAAAAA CAATCT GTC AGATTG CAACGATCTCATTAG Pnec_0789 682778 - 681597 - | oxygen-independent coproporphyrinogen III oxidase Pnec_0790 683064 - 682858 - | hypothetical protein TERM 553 684077 - 684090 + H 71 -8.1 -3.73224 | overlap 684068 GTCGAAGCTGGACGA GCAGC TTTA GCTGC TTTAATGGAAAGTCG TERM 554 684796 - 684807 + G 76 -4.4 -5.0538 | GTTTCTTCAAGAGCG TGAC GAAG GTCA TTTTTTAGAATGGGC Pnec_0793 684581 - 685219 + | Guanylate kinase Pnec_0794 685264 - 685467 + | DNA-directed RNA polymerase, omega subunit TERM 555 686077 - 686089 + G 83 -9.1 -4.33004 | overlap 686072 TTCATGGCTATGGCG CGCGA TGT TCGCG TTATTTTGGTTAAGT TERM 556 686422 - 686411 - g 73 -2.2 -5.24129 | GTGGCCGAGAAAAAA CGCT CTTT AGCA TCTACAATAAGATGC TERM 557 686896 - 686918 + G 75 -6.2 -4.45945 | overlap 686897 CAGATTAGAGCTCTT CCAAGGGGTG CAA CAACCCTTGA TTTTGCTTACTCCAT TERM 558 686897 - 686917 + G 71 -9.7 -3.26844 | overlap 686896 AGATTAGAGCTCTTC CAAGGGGTG CAA CAACCCTTG ATTTTGCTTACTCCA Pnec_0795 685483 - 687870 + | (p)ppGpp synthetase I, SpoT/RelA Pnec_0796 688373 - 687867 - | transcription elongation factor GreB TERM 559 687950 - 687935 - G 72 -2.6 -5.06414 | gap 1, opp_overlap 687935 687940, overlap 687940 GTGTTTGAATAAAAA CGCAATC ACC GATT-CG TGACTTAATGAGTGC TERM 560 688478 - 688501 + H 91 -7.4 -5.1971 | GCACCACCTTTTTAA GGGCCTAGTT GAAA AACTGAGCCC TTTTTCATTTTTAGT Pnec_0797 688644 - 688757 + | hypothetical protein Pnec_0798 688777 - 689013 + | protein of unknown function DUF140 TERM 561 689098 - 689109 + G 72 -5.8 -4.42238 | overlap 689088 GCATTGCCGATCGTT GGCT TGGT AGCC TTTTAATTGGCGTGA TERM 562 689390 - 689406 + G 79 -2.1 -5.60689 | overlap 689391 AATTTTGACCTTGTT CGCCGAC ATA GTCAGCA TTTTTTCTTCTATGC Pnec_0799 689040 - 689690 + | protein of unknown function DUF140 Pnec_0800 689690 - 689989 + | ABC-type cobalamin/Fe3+-siderophores transport systems ATPase component-like protein TERM 563 690104 - 690129 + F 100 -13.3 -4.1822 | opp_overlap 690116, overlap 690106 TGTAAGATGTGATCT GCGCTCAAGCG AGCT CGCTTGAGCTC TTTGTTGCGCTAACG TERM 564 690106 - 690127 + F 100 -14.5 -3.69068 | opp_overlap 690116, overlap 690104 TAAGATGTGATCTGC GCTCAAGCG AGCT CGCTTGAGC TCTTTGTTGCGCTAA TERM 565 690856 - 690881 + F 78 -8.3 -4.04206 | overlap 690842 ATTGCTTTATTTATA GCAATGGTATC TGCG GTTGCCATTGC TTTGTCTGCAAATCG TERM 566 691040 - 691055 + G 71 -3.3 -4.79352 | TATTGGGTTATCTTG GTCAA TATATT TTGAC TTTTCTTCTGGGTAA Pnec_0802 690859 - 691176 + | protein of unknown function DUF214 Pnec_0803 691180 - 691380 + | hypothetical protein TERM 567 692135 - 692145 + T 72 -5.4 -4.46254 | GCAAATCCAGGAGGT GCTT AAC AAGC TTTCTTCTGTCTTAG Pnec_0805 693078 - 692542 - | RDD domain containing protein Pnec_0806 693501 - 693229 - | hypothetical protein TERM 568 693366 - 693381 + g 82 -7.6 -4.63184 | opp_overlap 693347 CGAGATAATTTTCGC GAGCAA GACG TTGCTC TTTTTGAGATAGGTT Pnec_0807 693772 - 693572 - | hypothetical protein Pnec_0809 694339 - 693905 - | RNA polymerase, sigma-24 subunit, ECF subfamily Pnec_0810 694535 - 696322 + | acetolactate synthase, large subunit, biosynthetic type Pnec_0811 696322 - 696813 + | acetolactate synthase, small subunit Pnec_0812 696867 - 697883 + | ketol-acid reductoisomerase TERM 569 698543 - 698527 - g 74 -8.1 -3.85698 | TGTGTTGGTGATAAA GTATTTG CAA CAAATAC AGCCTTGGCGCGTTT Pnec_0813 697930 - 698574 + | phosphatidylserine decarboxylase related protein TERM 570 699211 - 699227 + G 78 -6.5 -4.68209 | CCGGTTCGTGATACT GCGATCC CTT GGGTTGC TTTCTTTATTGCCGT Pnec_0814 698602 - 699465 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 571 699634 - 699614 - f 74 -11.1 -2.71447 | opp_overlap 699615, overlap 699611 AGCCATCACATACCA GCCCCAGCA AAT TGCTGGGGT TTTTGTTTTATAAGG TERM 572 699615 - 699633 + F 100 -14.6 -5.54907 | opp_overlap 699614 699611 GCCATCACATACCAG CCCCAGCA AAT TGCTGGGG TTTTTGTTTTATAAG TERM 573 700439 - 700458 + G 74 -7.2 -4.29905 | GAAGAAATTGTGATG TCTTTGCG CACT CGTAAAGA TTATTTTGATATGGT Pnec_0815 699698 - 701245 + | 2-isopropylmalate synthase TERM 574 701299 - 701285 - f 75 -8.5 -3.74251 | opp_overlap 701285 TATATTTTCATTAAA CCGCC TATAT GGCGG TTTTTTGATGCCAAG TERM 575 701285 - 701299 + F 91 -8.5 -5.14563 | opp_overlap 701285 TATATTTTCATTAAA CCGCC TATAT GGCGG TTTTTTGATGCCAAG TERM 576 701502 - 701490 - g 82 -6.9 -4.88405 | overlap 701491 AATCGTCAAAGAAAA CGCGC GCA GCGCA AACGATACGGGTAGC Pnec_0816 701446 - 701715 + | ribosomal protein S15 TERM 577 701731 - 701787 + F 77 -4.6 -5.03145 | gap 1, opp_overlap 701733, overlap 701733 TTCTTATCGGTATGC AATGCCATCTATCTTAGGGTTGTTTCT TCGC GGAATCAGTCTTAAGC-AGATGGCATG TTTTTTGGGCGCTTC TERM 578 701733 - 701785 + F 72 -7.2 -4.13963 | gap 1, opp_overlap 701733, overlap 701731 CTTATCGGTATGCAA TGCCATCTATCTTAGGGTTGTTTCT TCGC GGAATCAGTCTTAAGC-AGATGGCA TGTTTTTTGGGCGCT TERM 579 701901 - 701919 + F 70 -9.6 -2.91276 | overlap 701900 701903 GATCTTAAAATGCTC CAGTGTTG TCG CGACACTG CTTTATCCCGCGACA TERM 580 702201 - 702189 - g 85 -5.5 -5.28778 | ATTACCTAGAAAAAA CCTAC GCA GCAGG CAAGATCCCTGGCGG Pnec_0817 701984 - 704152 + | Polyribonucleotide nucleotidyltransferase Pnec_0819 705191 - 705949 + | Triose-phosphate isomerase Pnec_0820 705970 - 706314 + | preprotein translocase, SecG subunit Pnec_0821 706595 - 706954 + | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Pnec_0822 706960 - 707442 + | NADH-quinone oxidoreductase, B subunit Pnec_0823 707446 - 708045 + | NADH (or F420H2) dehydrogenase, subunit C Pnec_0824 708049 - 709302 + | NADH dehydrogenase I, D subunit Pnec_0825 709326 - 709829 + | NADH-quinone oxidoreductase, E subunit Pnec_0826 709826 - 711124 + | NADH-quinone oxidoreductase, F subunit TERM 581 711929 - 711942 + G 72 -6.7 -4.3467 | ATGAATGCTGGATTA GCGAT CGTG ATCGC TTTTCCTATGAAGGT TERM 582 713317 - 713286 - g 73 -4.5 -4.8622 | TGGCTTAAGTAAAAA CACATTCACTGAA TTGGGG CTCAATGAAGGTG ATGCTGTACGCGTTA Pnec_0827 711157 - 713472 + | NADH-quinone oxidoreductase, chain G TERM 583 713513 - 713523 + G 70 -2.4 -5.05712 | CCTCGTTACCACCCA GGGC GAC GCCA TTTTTGGTTCTTTGT Pnec_0828 713481 - 714554 + | NADH dehydrogenase (quinone) TERM 584 714843 - 714820 - g 73 -10.3 -2.97735 | opp_overlap 714816, overlap 714813 GATCGAAACAGCAGA GCGCGACGA TGGCAC TCGTCGCAC CAGTCGTTATGACAT Pnec_0829 714566 - 715057 + | NADH-quinone oxidoreductase, chain I TERM 585 715238 - 715267 + G 80 -7.3 -4.5852 | GCCTTTGGATGCTGC TTAAAGCCGAGTT CTTG AGTTTGGCTTTAA TTTTGGTTTACGTTG Pnec_0830 715078 - 715725 + | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Pnec_0831 715722 - 716030 + | NADH-ubiquinone oxidoreductase chain 4L TERM 586 717305 - 717315 + G 80 -6.8 -4.62203 | GCGGCAAGTCATATT CCTG GAT CAGG TTTTGCTTATTTCGC Pnec_0832 716033 - 718093 + | proton-translocating NADH-quinone oxidoreductase, chain L Pnec_0833 718118 - 719584 + | proton-translocating NADH-quinone oxidoreductase, chain M TERM 587 719725 - 719747 + G 76 -4.9 -4.86861 | gap 1, opp_overlap 719718, overlap 719731 TTGAGCAAGACGTTT TTCATACGCC TCGT GGCGT-TGGA TTTGTTTATTTCTTC Pnec_0834 719595 - 721094 + | proton-translocating NADH-quinone oxidoreductase, chain N TERM 588 721121 - 721132 + F 80 -5.8 -5.05116 | opp_overlap 721120 ACTTTTTAATAAAGG CTCC CAGG GGAG TTTTATTGTTTGTGA Pnec_0835 721209 - 721808 + | NUDIX hydrolase Pnec_0836 721874 - 722146 + | protein of unknown function DUF1178 Pnec_0837 722193 - 722402 + | NADH:flavin oxidoreductase Old Yellow Enzyme family-like protein Pnec_0838 722464 - 722826 + | tartrate dehydrogenase TERM 589 722854 - 722871 + T 100 -11.3 -4.95957 | opp_overlap 722854 CTTGTTGCATCTAAA GGACTCC ATAC GGAGTCC TTTTTACTTGCTTTG TERM 590 722871 - 722854 - T 87 -11.3 -3.64703 | opp_overlap 722854 CTTGTTGCATCTAAA GGACTCC ATAC GGAGTCC TTTTTACTTGCTTTG Pnec_0839 723545 - 722835 - | DNA polymerase III, epsilon subunit Pnec_0840 723765 - 723520 - | acriflavin resistance protein Pnec_0841 724304 - 723840 - | ribonuclease H Pnec_0842 725132 - 724314 - | Methyltransferase type 11 Pnec_0843 725139 - 725810 + | hydroxyacylglutathione hydrolase Pnec_0844 725831 - 725947 + | hydroxyacylglutathione hydrolase TERM 591 727131 - 727117 - f 87 -5.7 -5.40072 | TCTTCCCCAAAAAAA TGCTG CAACT CAGCA TAAATCCGCATCGAC Pnec_0847 727170 - 727838 + | Propionate--CoA ligase Pnec_0848 728253 - 729449 + | carbamoyl-phosphate synthase, small subunit TERM 592 731455 - 731431 - g 95 -12.9 -3.67052 | opp_overlap 731421 AGATCTCGAACACAA TGGTGTTCCGA TTA TCGGCACACCA CCGGACATGATTGAT Pnec_0849 729449 - 732712 + | carbamoyl-phosphate synthase, large subunit Pnec_0850 732771 - 733247 + | transcription elongation factor GreA Pnec_0851 733442 - 733633 + | conserved hypothetical membrane spanning protein TERM 593 733729 - 733715 - T 75 -4.9 -4.8622 | opp_overlap 733715 733716, overlap 733716 GCGGGCAACTAAAAA CGCCG ACTAG CGGCA TTTTGTCATTAAGCA TERM 594 733762 - 733780 + T 71 -2.4 -5.15167 | opp_overlap 733757 TCATTAAGCACTTCA GTTTTAAG AAC CTAAAGAC TTTTTCTTGGTGCTG Pnec_0852 734391 - 733765 - | protein of unknown function UPF0044 TERM 595 734664 - 734694 + G 75 -11.3 -3.00923 | opp_overlap 734662, overlap 734666 GCTGAGGGTAAAGTT GATTTGGTGCTAT CGGAT ATGGCGCCAAATC TATCTGGTGTTGAAG Pnec_0853 734433 - 734945 + | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 596 735745 - 735755 + G 72 -5.4 -4.39828 | CCGTTCTTCTCCATC TCAG GAT CTGA TTTTGTAGAGATGTT Pnec_0854 735103 - 736968 + | ATP-dependent metalloprotease FtsH TERM 597 737044 - 737016 - f 72 -7.4 -4.10007 | opp_overlap 737018 737019 737036 737037, overlap 737018 737019 ACAAGGCTTTCAAAA TATGCCCACAAC TTGGC GTTGTGGGCGTT TTCTTTTTGATTTTG TERM 598 737018 - 737042 + F 100 -12.2 -5.36689 | opp_overlap 737016 737018 737019, overlap 737019 737036 737037 AAGGCTTTCAAAATA TGCCCACAAC TTGGC GTTGTGGGCG TTTTCTTTTTGATTT TERM 599 737042 - 737018 - f 78 -10 -3.64488 | opp_overlap 737018 737019 737036 737037, overlap 737016 737019 AAGGCTTTCAAAATA TGCCCACAAC TTGGC GTTGTGGGCG TTTTCTTTTTGATTT TERM 600 737041 - 737019 - f 86 -13.5 -2.78211 | opp_overlap 737019 737018 737036 737037, overlap 737018 737016 AGGCTTTCAAAATAT GCCCACAAC TTGGC GTTGTGGGC GTTTTCTTTTTGATT TERM 601 737019 - 737041 + F 100 -13.5 -3.78353 | opp_overlap 737018 737016 737019, overlap 737018 737036 737037 AGGCTTTCAAAATAT GCCCACAAC TTGGC GTTGTGGGC GTTTTCTTTTTGATT TERM 602 737037 - 737076 + F 72 -10.1 -2.8789 | opp_overlap 737019 737018 737016, overlap 737019 737018 737036 CACAACTTGGCGTTG TGGGCGTTTTCTTTTTG ATTTTG CGAAATGTAAACGCCCA ATTGTTATGGGAATT TERM 603 737895 - 737880 - g 79 -4 -5.14965 | AGCCTTATGAAAAAA CAATAC TTTG GTACTG ACGGCATTCGAGGTG Pnec_0856 737862 - 739214 + | phosphoglucosamine mutase TERM 604 739314 - 739330 + T 71 -3.7 -4.87626 | overlap 739315 TGGTGGCGTATCGAA TTTGCTC ATT GAGTAAG TTTTTCATATTGAGA TERM 605 739358 - 739370 + T 77 -2 -5.4251 | overlap 739364 AGATATGCCGTCCAA TTCA CTTGC TGAA TTTTTTCTATATAAG Pnec_0858 740296 - 740087 - | hypothetical protein Pnec_0859 741166 - 740417 - | TonB-dependent receptor plug Pnec_0860 741609 - 741283 - | hypothetical protein Pnec_0861 741937 - 742290 + | hypothetical protein Pnec_0862 742445 - 742651 + | hypothetical protein TERM 606 742669 - 742684 + G 71 -3.3 -4.78764 | opp_overlap 742669 AAATATTATGAATAT GTCTT ATAAAA AAGAC TTTTTGGTGGGTTTA Pnec_0863 742661 - 742804 + | hypothetical protein Pnec_0865 744137 - 743607 - | FAD linked oxidase domain protein TERM 607 743989 - 743977 - G 71 -3.3 -4.91109 | overlap 743978 GCGCCACCACAAAAA CCGGT ATG ACCGC CTTGCGGAACTAAAG Pnec_0866 744579 - 744196 - | membrane protein-like protein TERM 608 744471 - 744451 - G 76 -11.9 -2.58249 | overlap 744454 CACACCTTTCAGAAT CAACCAGGA GCC TCCTGGTCG CAGCGGGGAAATAAA TERM 609 744468 - 744454 - G 73 -10 -3.44325 | overlap 744451 ACCTTTCAGAATCAA CCAGGA GCC TCCTGG TCGCAGCGGGGAAAT Pnec_0867 745205 - 744597 - | flavoprotein WrbA Pnec_0868 745228 - 745449 + | hypothetical protein Pnec_0869 745461 - 745865 + | putative ribonuclease BN Pnec_0870 745944 - 746399 + | CBS domain containing protein TERM 610 746440 - 746428 - f 70 -6.3 -4.16016 | opp_overlap 746427 TCATTTTCCAACAAA TGACA TAA TGTCA ATATGTCAGGAAATA Pnec_0871 746443 - 747558 + | Chorismate synthase TERM 611 747806 - 747818 + G 100 -7.7 -5.65177 | AGATTCTGTGCCTGT CTAGC TGC GCTAG TTTTTTTATGCATCT Pnec_0872 747572 - 748729 + | major facilitator superfamily MFS_1 Pnec_0873 749250 - 748822 - | PpiC-type peptidyl-prolyl cis-trans isomerase Pnec_0874 749660 - 749376 - | BolA family protein Pnec_0875 750118 - 749657 - | Intracellular septation protein A Pnec_0876 750387 - 750229 - | Methionine sulfoxide reductase B Pnec_0877 751182 - 750919 - | protein of unknown function UPF0061 TERM 612 751197 - 751178 - G 78 -12.2 -2.61216 | overlap 751170 TCAGCAAGCAATGGA GCCATTGC ACTA GCAATGGC AGGGCATATTCCAGT Pnec_0878 752094 - 751294 - | protein of unknown function UPF0061 Pnec_0879 752258 - 752374 + | thioesterase superfamily protein Pnec_0880 752960 - 752421 - | protein of unknown function DUF833 TERM 613 753146 - 753128 - R 72 -9.6 -3.14132 | overlap 753132 TGTTCTGTCCACCAA GAAACACC TTC GGTGTCTC GATCGTAAAACTCAT TERM 614 753142 - 753132 - R 72 -6.8 -4.24342 | overlap 753128 CTGTCCACCAAGAAA CACC TTC GGTG TCTCGATCGTAAAAC Pnec_0881 754242 - 753235 - | glycine cleavage T protein (aminomethyl transferase) TERM 615 754179 - 754133 - G 72 -3 -5.02074 | gap 1 TGATTTTGCAAAAAA CTCGCGGCATCAGGGCCTTCT ATAATG ATAAGGCCCC-ATTCAGCAAG ATTGCAGGCCAGGGA Pnec_0882 754263 - 755336 + | aminodeoxychorismate lyase Pnec_0883 755349 - 755984 + | dTMP kinase Pnec_0884 755985 - 757106 + | DNA-directed DNA polymerase Pnec_0885 757137 - 757928 + | hydrolase, TatD family Pnec_0886 758037 - 758237 + | hypothetical protein Pnec_0887 758472 - 758284 - | hypothetical protein Pnec_0888 758666 - 758469 - | hypothetical protein Pnec_0889 759249 - 758680 - | HNH endonuclease Pnec_0890 759854 - 759333 - | protein of unknown function UPF0227 Pnec_0891 760314 - 759844 - | Hydroxypyruvate isomerase Pnec_0892 760503 - 760318 - | hydroxypyruvate isomerase Pnec_0893 760719 - 760579 - | hydroxypyruvate isomerase TERM 616 761216 - 761198 - R 100 -14.6 -5.19879 | opp_overlap 761198 GCGTAAATACAAAAA GCCCCCTA AAT TAGGGGGC TTTTTAATTGTCTTG TERM 617 761198 - 761216 + r 100 -14.6 -4.99056 | opp_overlap 761198 GCGTAAATACAAAAA GCCCCCTA AAT TAGGGGGC TTTTTAATTGTCTTG Pnec_0894 763025 - 761619 - | glutamyl-tRNA synthetase TERM 618 761786 - 761740 - G 79 -10.3 -3.57971 | gap 2, opp_overlap 761733 761753, overlap 761743 ACAGGCATTGCCAAA GCAGGCATTTTAAGCTGATGCTG CGC CAGCACCTGCTTG-AATGCC-GC AGCATAACCCTCTTT TERM 619 761784 - 761743 - G 77 -11.7 -2.91695 | gap 1, opp_overlap 761733 761753, overlap 761740 GGCATTGCCAAAGCA GGCATTTTAAGCTGATGCTG CGC CAGCACCTGCTTG-AATGCC GCAGCATAACCCTCT Pnec_0896 764125 - 763820 - | Septum formation initiator TERM 620 763984 - 763997 + g 73 -2.3 -5.1615 | opp_overlap 763986 763987 763991, overlap 763967 763993 GCTTGGCGTTTCGTA AAGCC AAGA GGCTA TTTTTTGCCTCTTGA Pnec_0897 765432 - 764146 - | Phosphopyruvate hydratase TERM 621 765529 - 765498 - R 82 -6.6 -5.02074 | opp_overlap 765506, overlap 765526 CTATCTTCTAAAAAA GCTCCTGATGACAT AACA ATGTCATCAATTGC AACTAACGATGCAAG Pnec_0898 766336 - 765473 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 622 766355 - 766368 + r 100 -3.1 -5.88471 | overlap 766356 TTTCCTTTATGCAAC TTGCT TTTC AGCAG TTTTTTTTGATGCTC Pnec_0899 768009 - 766333 - | CTP synthase TERM 623 767502 - 767489 - G 80 -6.7 -4.84642 | GTTAAATGAACAAAA GCACA ATCG TGTGC AGGTAAACGTAAACT TERM 624 767850 - 767835 - G 71 -3.3 -4.82901 | opp_overlap 767843 767844 CTTCGGTTACAAAAA CTTCA CCATGT TGAAG TGGGCTCATTGTGCC TERM 625 768077 - 768067 - H 72 -5.4 -4.57474 | opp_overlap 768067 768068 TCAACTTAGACAAAA CTGA AAA TCAG TAATATTGGGTTTCA TERM 626 770237 - 770225 - g 70 -4.9 -4.43392 | overlap 770222 TGAAAAGCAAAACAA GAAAA ACG TTTTC TCTGGCCGCATCCTT Pnec_0900 768519 - 771098 + | aconitate hydratase 2 TERM 627 771156 - 771139 - T 93 -11.3 -4.43477 | opp_overlap 771139 GTCACTTAATTAAAA GGCGATC ATCA GATCGCC TTTTTTATTGCACTG TERM 628 771139 - 771156 + T 100 -11.3 -5.46657 | opp_overlap 771139 GTCACTTAATTAAAA GGCGATC ATCA GATCGCC TTTTTTATTGCACTG Pnec_0901 771964 - 771185 - | Spermine synthase TERM 629 771351 - 771333 - G 73 -7.4 -4.07568 | TTTGGCCCCTTAAAA GCAATGGC TAC GACATTGC AATCATGAAACTCAG TERM 630 771914 - 771900 - G 71 -7.8 -3.92659 | opp_overlap 771900 771899, overlap 771894 771902 GTTCCAAAATGTAAA TAGCGG ATG CCGCCA CTTTCGGAAAAGGTA Pnec_0902 775989 - 771952 - | phosphoribosylformylglycinamidine synthase TERM 631 773398 - 773388 - G 74 -6.8 -4.19817 | opp_overlap 773387 CTGACTGATCTAAAA CCTG AGC CAGG ATACTTCCGGCCATG TERM 632 775584 - 775599 + g 83 -4.6 -5.27779 | GTACCATTTGCTTTT GCTCTG AGGT CAGCGC TTTTTTGCTCTTCCA Pnec_0903 776355 - 776011 - | ABC transporter related TERM 633 776811 - 776786 - g 89 -9 -4.57073 | opp_overlap 776784, overlap 776788 CATGCTCTTTAAAAA CGTATGGGGC GCTATG GCCCCATATG AAGTATTGTTTAAGA TERM 634 776809 - 776788 - g 71 -10.2 -2.60032 | opp_overlap 776784, overlap 776786 TGCTCTTTAAAAACG TATGGGGC GCTATG GCCCCATA TGAAGTATTGTTTAA Pnec_0904 776599 - 776841 + | arylesterase Pnec_0905 778286 - 776838 - | hypothetical protein Pnec_0906 780999 - 778567 - | ATP-dependent protease La TERM 635 778817 - 778828 + g 70 -2.2 -5.07652 | ATACCACCTCGATGA GCTG CCAA TAGC TTTTCTTTTAAACCG TERM 636 778995 - 779008 + g 76 -5.3 -4.85599 | CGCCATCTGGGAAGT GGATA TGAA TATCC TTTTTCTCAAATAAA TERM 637 780441 - 780451 + g 74 -6.8 -4.2679 | CGTCCGTCATTTCGA GCAG GCG CTGC TTTTGCTCCAGCTTC TERM 638 781164 - 781151 - R 100 -2.3 -5.9667 | overlap 781152 AAAAAGACAAAAAAA TGGCA AAAA TGCCC AAAAAAAATAGCGAA Pnec_0907 782553 - 781192 - | ATP-dependent Clp protease, ATP-binding subunit ClpX Pnec_0908 783213 - 782584 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 639 782821 - 782842 + g 89 -10.9 -4.07568 | gap 1, opp_overlap 782808 CATGACGCGTGAATT TGGCA-GCGC ATA GCGCTTGCCA TTTTCACCAGCGCAC TERM 640 782884 - 782866 - G 72 -6.6 -4.27519 | AGCGCACAATAGAAA GGCCCCCA TAC TGGCAGCC ATACCCATGCATAAA Pnec_0909 784581 - 783244 - | trigger factor Pnec_0910 785307 - 784804 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Pnec_0911 786070 - 785321 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 641 785531 - 785559 + g 100 -10.3 -5.04385 | CATCTGCGGTGTTTG CGCTTGCCAGAGA TGG TCTCTGGGAATCG TTTTTTCAGCGTGTG TERM 642 786461 - 786477 + G 78 -6.5 -4.56597 | opp_overlap 786463, overlap 786463 CAACAGCTCTACAGA GATTGGG GCC CCCAAAC TTTTTGGCAAGCCAC Pnec_0912 786094 - 789639 + | transcription-repair coupling factor TERM 643 790501 - 790491 - g 100 -8.2 -5.27335 | opp_overlap 790491, overlap 790492 GTGGTGAAAGAAAAA GCCG ACG CGGC TTTTGACCAAGTCGG TERM 644 790491 - 790501 + G 76 -8.2 -4.08767 | opp_overlap 790491 790492 GTGGTGAAAGAAAAA GCCG ACG CGGC TTTTGACCAAGTCGG Pnec_0913 789657 - 790547 + | phosphoserine phosphatase SerB Pnec_0914 791761 - 790577 - | acetyl-CoA acetyltransferase Pnec_0915 793200 - 791842 - | MiaB-like tRNA modifying enzyme YliG TERM 645 792028 - 792041 + g 76 -2.3 -5.41143 | ATCAATGATAACTTG GAGGC GTTT GCCTA TTTTTTTAGCAAGTC Pnec_0916 793763 - 793203 - | polyhydroxyalkonate synthesis repressor, PhaR Pnec_0917 794492 - 793881 - | short-chain dehydrogenase/reductase SDR Pnec_0918 794615 - 794496 - | hypothetical protein Pnec_0919 796315 - 794681 - | poly(R)-hydroxyalkanoic acid synthase, class I Pnec_0920 797193 - 796429 - | protein of unknown function DUF152 Pnec_0921 798230 - 797196 - | pseudouridine synthase, RluA family Pnec_0922 798251 - 799138 + | putative transmembrane protein TERM 646 799191 - 799161 - T 100 -14.3 -3.92075 | opp_overlap 799168, overlap 799168 ATTCTTATGCATAAA TAAAAAATCCTCC GCAAT GGAGGATTTTTTA TATGATGGCAACCGG TERM 647 799168 - 799184 + T 100 -8.7 -5.39721 | opp_overlap 799168 799161 TGCATAAATAAAAAA TCCTCCG CAA TGGAGGA TTTTTTATATGATGG TERM 648 799184 - 799168 - T 100 -8 -5.72622 | opp_overlap 799168, overlap 799161 TGCATAAATAAAAAA TCCTCC GCAAT GGAGGA TTTTTTATATGATGG Pnec_0923 800334 - 799189 - | alanine racemase TERM 649 800054 - 800038 - G 75 -2.9 -5.14965 | ATTTTCATGAAAAAA TCCCTCT AAA AGCAGGA TTCGGCCTTTCCAGC TERM 650 800984 - 800967 - g 83 -6.3 -5.00884 | overlap 800971 ACGTCTCCCAAAAAA CCAATCC AATT GAATTGG TAAAAGACTTCGCTA Pnec_0924 800354 - 801673 + | major facilitator superfamily MFS_1 Pnec_0925 802213 - 801692 - | hypothetical protein Pnec_0926 802740 - 802210 - | GCN5-related N-acetyltransferase TERM 651 802717 - 802700 - G 79 -9.1 -4.16842 | opp_overlap 802706 802707 TGCATCGGTAAGAAA GAGGGCT CTGC AGCCCCC TCTGCAGGTTTGATG Pnec_0927 803456 - 802740 - | peptidase M22 glycoprotease TERM 652 802870 - 802845 - G 82 -5.5 -5.14563 | opp_overlap 802858 TCCCTCATGAAAAAA TTGATGTGC GCACTTCA GCACACCAA GTGCGGAGATTGCTA TERM 653 802987 - 803027 + g 75 -2.6 -5.10208 | AAATGAAGATCTTCA GGTTTGGTTAAACGAATT TCACC GATACGTATAGCTAAGCC TTTTTCTTGCACTTC Pnec_0928 803957 - 803490 - | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 654 803902 - 803917 + g 83 -9 -4.2123 | AGTCGATCTTTATTT TCGCCA CCAA TGGCGA TTTGTTGAATACCTA Pnec_0929 806008 - 803972 - | acetyl-CoA carboxylase, biotin carboxylase Pnec_0930 807580 - 806024 - | carboxyl transferase TERM 655 806189 - 806208 + g 76 -2.2 -5.28176 | gap 1, overlap 806189 806191 AAATTTCGACTTGTA TT-CAGCTT CTC GAGCTGTAA TTTTTTCTGGATCAG Pnec_0931 808592 - 807567 - | LAO/AO transport system ATPase TERM 656 808630 - 808649 + r 76 -10.8 -3.06183 | GTTTAACAGACTTAC GGATTTGC TCGA GCAAATCC TTGGCTGACACTGGA Pnec_0932 810781 - 808607 - | methylmalonyl-CoA mutase, large subunit TERM 657 809878 - 809868 - G 74 -6.8 -4.35483 | overlap 809870 CGCCACCACAACAAA CGTG CAG CACG CAACTTCGCAACTTC Pnec_0933 810876 - 811514 + | transcriptional regulator, GntR family TERM 658 811540 - 811524 - T 87 -5.2 -5.37593 | opp_overlap 811535 811539, overlap 811516 811535 CGTTAAATTAAAAAA CCTTTA AAAAA TAAAGG CTTAGATGATTAATC TERM 659 811535 - 811565 + T 100 -14.3 -3.35679 | opp_overlap 811524 811535, overlap 811539 AAAACCTTTAAAAAA TAAAGGCTTAGAT GATTA ATCTAAGCCTTTA TTGTAAGTAGACAGA TERM 660 811565 - 811535 - T 100 -14.3 -5.08011 | opp_overlap 811535 811539, overlap 811524 AAAACCTTTAAAAAA TAAAGGCTTAGAT GATTA ATCTAAGCCTTTA TTGTAAGTAGACAGA TERM 661 811539 - 811561 + T 90 -10.7 -4.33417 | opp_overlap 811524 811535, overlap 811535 CCTTTAAAAAATAAA GGCTTAGAT GATTA ATCTAAGCC TTTATTGTAAGTAGA Pnec_0934 811945 - 811592 - | cytochrome c class I Pnec_0935 812350 - 811976 - | putative periplasmic cytochrome type-c oxidoreductase signal peptide protein TERM 662 812722 - 812669 - g 77 -12 -2.76696 | gap 1, overlap 812668 TGCTTGCCGAAGAAG TCGCGGCCACACTCAATATGCCACT CCTGC AATGGCATACTGAGT-CGACCACAA AAGCACAACAAGGTC Pnec_0936 812581 - 813045 + | ATPase associated with various cellular activities, AAA_5 Pnec_0938 813413 - 813871 + | Endoribonuclease L-PSP TERM 663 814776 - 814766 - T 79 -4 -5.27335 | opp_overlap 814766 CGTTCCAAAGAAAAA CTAA GTC TTAG TTTGCTGTTAACTTA Pnec_0940 817148 - 814773 - | DNA topoisomerase IV, A subunit TERM 664 816300 - 816314 + g 79 -10 -3.73068 | opp_overlap 816294 AACAACAATTTGCCA TTGGCC ACG GGCCAA TTCTTCGATTGACCA Pnec_0941 819211 - 817223 - | ATP-binding region ATPase domain protein TERM 665 819129 - 819148 + g 70 -9.2 -3.36518 | opp_overlap 819129, overlap 819118 GTGCGGGTATACATA CCAGACCG CTGA CGGACTGG TTCTAGCCCTTTTAG TERM 666 820576 - 820601 + H 87 -11.3 -3.57263 | gap 1, overlap 820578 GCTGGTGGGTTTTTC CA-GCTGAGCAA GGA TTGCTCAGCATG TTTGGCACTCAAGAT TERM 667 820578 - 820598 + H 87 -14.1 -2.61695 | overlap 820576 TGGTGGGTTTTTCCA GCTGAGCAA GGA TTGCTCAGC ATGTTTGGCACTCAA Pnec_0945 821816 - 822649 + | NUDIX hydrolase Pnec_0947 824121 - 825245 + | FAD dependent oxidoreductase Pnec_0948 825334 - 825522 + | thiazole biosynthesis family protein Pnec_0949 825545 - 825811 + | hypothetical protein TERM 668 826245 - 826266 + T 100 -14.5 -5.48213 | opp_overlap 826245 AGCCAAATAAGTAAA GCCCCTAGA TTTC TCTAGGGGC TTTTTCTTTTACATC TERM 669 826266 - 826245 - T 100 -14.5 -4.15366 | opp_overlap 826245 AGCCAAATAAGTAAA GCCCCTAGA TTTC TCTAGGGGC TTTTTCTTTTACATC Pnec_0951 827353 - 827066 - | alpha/beta hydrolase fold TERM 670 827366 - 827379 + H 76 -8.1 -4.18441 | CACTTCATCTCCTTT TGGGC TTAT GCCCA TTTGTAATTATTTCT TERM 671 827695 - 827679 - g 78 -12.3 -2.52896 | TTAGTCTCCAATTTA TTGCCGC ATG GCGGCAA AATCCGGACCTACAT Pnec_0952 827469 - 828776 + | peptidase U32 TERM 672 829901 - 829887 - f 76 -10 -3.29973 | opp_overlap 829885, overlap 829880 829879 TGAAAAACTCATGAA GCACGA AGG TCGTGC CGTAGTCTTTGAAAA Pnec_0956 830341 - 830766 + | hypothetical protein Pnec_0957 831521 - 830763 - | phospholipid/glycerol acyltransferase Pnec_0958 832564 - 831590 - | 2-nitropropane dioxygenase NPD Pnec_0959 834237 - 832561 - | AMP-dependent synthetase and ligase TERM 673 834180 - 834205 + g 72 -2.6 -5.00884 | gap 1, opp_overlap 834177 834185, overlap 834180 834182 ATTCAAAGATATCCA C-ATCATGAGG TACGC CCTCAGGATAG TTTTTTAACCAGGGT TERM 674 834369 - 834325 - R 100 -19 -2.55351 | gap 1, opp_overlap 834332, overlap 834332 TTGCGCGACATCAAT TCAAAAAGTCAAAGCCCTCTA CGAT CAGAGGGCTTTGACTTTT-GA TGCAGATAAAAATTA TERM 675 834363 - 834332 - R 100 -18.2 -4.76892 | opp_overlap 834332, overlap 834325 ACATCAATTCAAAAA GTCAAAGCCCTCTA CGAT CAGAGGGCTTTGAC TTTTGATGCAGATAA TERM 676 834332 - 834363 + r 100 -17.5 -4.26076 | opp_overlap 834332 834325 ACATCAATTCAAAAA GTCAAAGCCCTCT ACGATC AGAGGGCTTTGAC TTTTGATGCAGATAA Pnec_0960 835113 - 834382 - | hypothetical protein TERM 677 835448 - 835410 - H 100 -17.6 -4.17002 | opp_overlap 835413, overlap 835411 TAGCAAATCAAAGAA GGGGCTGCCTACAAAATC ATT GATTTTGTAGGCAGCTCT TGAAATCGCCAGCAA TERM 678 835447 - 835411 - H 100 -21.1 -3.09117 | opp_overlap 835413, overlap 835410 AGCAAATCAAAGAAG GGGCTGCCTACAAAATC ATT GATTTTGTAGGCAGCTC TTGAAATCGCCAGCA TERM 679 835413 - 835445 + H 100 -22.3 -3.05844 | opp_overlap 835411 835410 CAAATCAAAGAAGGG GCTGCCTACAAAATC ATT GATTTTGTAGGCAGC TCTTGAAATCGCCAG Pnec_0962 836050 - 837837 + | acyl-CoA dehydrogenase domain protein TERM 680 838018 - 838000 - g 70 -2.5 -5.00895 | gap 1 GCCAGTACATAAAAA TGCTATTG CCAT CAA-AGCA ATCGAAAACCTCAAG TERM 681 838490 - 838516 + G 79 -9.5 -3.74872 | gap 1 ATCTTGGCAGTATTT GCCGAGGCGCAA AAGT TTG-GCCTTGGC TTTGATGAGGTGGAT TERM 682 838740 - 838725 - g 79 -2.6 -5.31275 | CTCTAGGACAAAAAA CAAAAG CAGG CTTTTA TCGCAAAGATGACAA TERM 683 839935 - 839918 - g 74 -5.5 -4.59773 | GCTTATCTGCAAAAA GGCGACA TCAT TGTCCCC AACGTCTATGAACTA Pnec_0963 837848 - 840289 + | 3-hydroxyacyl-CoA dehydrogenase NAD-binding Pnec_0964 840308 - 841504 + | acetyl-CoA acetyltransferase Pnec_0965 841545 - 841643 + | hypothetical protein Pnec_0966 841640 - 841897 + | hypothetical protein TERM 684 842011 - 842031 + F 89 -9.7 -4.58395 | opp_overlap 842011, overlap 842014 ACAATAAGCTTAAGA GTGGCGGAT GAG ATCCGCTGC TTTTTCAGCGATAGC TERM 685 842014 - 842028 + F 74 -10 -3.23975 | opp_overlap 842011, overlap 842011 ATAAGCTTAAGAGTG GCGGAT GAG ATCCGC TGCTTTTTCAGCGAT Pnec_0968 842798 - 843316 + | Adenine phosphoribosyltransferase Pnec_0969 843619 - 843338 - | hypothetical protein Pnec_0970 843984 - 843616 - | putative transmembrane protein Pnec_0971 844332 - 843991 - | protein of unknown function DUF883 ElaB TERM 686 844143 - 844160 + g 80 -9.9 -3.88137 | overlap 844154 CACTGGAAAGGCTCT CTTTGGC GCCA GCCAAAG TTTCTAGGGCCTTGT Pnec_0972 844797 - 844390 - | Smr protein/MutS2 TERM 687 845317 - 845349 + H 78 -10.1 -3.61268 | opp_overlap 845313 845322 845325, overlap 845319 CAGATTTAACATCTA TATCACAACTTCA GTAGTTG TGAAGTTGTGATG TTTACAAATTACATA TERM 688 845319 - 845347 + H 76 -10.5 -3.38314 | opp_overlap 845313 845322 845325, overlap 845317 GATTTAACATCTATA TCACAACTTCA GTAGTTG TGAAGTTGTGA TGTTTACAAATTACA Pnec_0973 845481 - 845762 + | hypothetical protein Pnec_0975 846451 - 846227 - | hypothetical protein TERM 689 846552 - 846530 - R 100 -9.9 -5.79526 | opp_overlap 846530 ACACCGCAAAAAAAA TAGAGCCCC ATATA GGGACTCTA TTTTGAAGTATGGCG TERM 690 846530 - 846552 + r 76 -7.7 -4.16943 | opp_overlap 846530 ACACCGCAAAAAAAA TAGAGCCCC ATATA GGGACTCTA TTTTGAAGTATGGCG Pnec_0976 847981 - 846731 - | aspartate kinase TERM 691 846930 - 846955 + g 77 -6.9 -4.44548 | opp_overlap 846935 ACTACTGAAACTTTA GAAACCTTTGG ATCA CCAGAGATTTC TTTTGCTTCGATATG Pnec_0977 849359 - 848043 - | tRNA(Ile)-lysidine synthetase Pnec_0978 850296 - 849325 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Pnec_0979 850977 - 850306 - | HhH-GPD family protein TERM 692 850943 - 850959 + g 86 -5.1 -5.45802 | overlap 850946 TCTTGCAAAATTGAT TCTGAAG CAG CTTCTGA TTTTTCTTTTACCGC Pnec_0980 852401 - 850980 - | cysteinyl-tRNA synthetase TERM 693 851216 - 851206 - G 76 -8.2 -4.07537 | opp_overlap 851205 AAGAAATTTAAAGAA GCGC CAA GCGC CTTCAATATATTGGC TERM 694 853314 - 853282 - gH 70 -9.9 -2.90161 | overlap 853253 853279 CACCAAGCACAAGCA TGGGGGATTCATTAC CAA GCAATAATCCCCCCA CCAACCTTCCAGAAA Pnec_0981 852462 - 853370 + | Tetratricopeptide TPR_2 repeat protein TERM 695 853387 - 853368 - gf 85 -10.8 -3.80855 | overlap 853371 TCTCCTAAAAACCAA TAAGGGTG ATAT CACCCTTA CCCTTGATGCCACCA TERM 696 853384 - 853371 - gf 76 -8.1 -4.0257 | overlap 853368 CCTAAAAACCAATAA GGGTG ATAT CACCC TTACCCTTGATGCCA Pnec_0982 853342 - 853845 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Pnec_0983 853842 - 854624 + | UDP-2,3-diacylglucosamine hydrolase Pnec_0984 855510 - 854656 - | Inositol-phosphate phosphatase TERM 697 854807 - 854821 + g 79 -10 -3.67792 | opp_overlap 854797 AGCAAGGCACCAGCC GCCATG TCC CATGGC TTTAGATCGCTCTCA TERM 698 855296 - 855309 + g 80 -9.5 -3.87994 | opp_overlap 855295 855294 AGCGTTTCAATAATG GCCGC TTCT GCGGC TTTGTCCACCTCGGT Pnec_0985 855587 - 856339 + | tRNA/rRNA methyltransferase (SpoU) Pnec_0987 856854 - 857084 + | serine O-acetyltransferase TERM 699 857127 - 857144 + T 79 -2.7 -5.36441 | opp_overlap 857128, overlap 857128 GACAGAAATAAAAAA AGAATAG CGTG CTATTCC TTTTTTATATGAAGC TERM 700 857143 - 857128 - T 100 -6.2 -6.04953 | opp_overlap 857128 857127 ACAGAAATAAAAAAA GAATAG CGTG CTATTC CTTTTTTATATGAAG Pnec_0988 857777 - 857166 - | putative FkbP-type peptidyl-prolyl cis-trans isomerase TERM 701 857665 - 857700 + g 70 -4.8 -4.45517 | gap 1, opp_overlap 857672, overlap 857667 857668 857669 TAACCCCCATGCAGG TA-TACCATCGGGGAAT CCG GTTCCTCGATGGCGTTA TTTTGTGCATCGTTT TERM 702 857667 - 857697 + g 83 -9 -4.33182 | opp_overlap 857672, overlap 857665 857668 857669 ACCCCCATGCAGGTA TACCATCGGGGAAT CCG GTTCCTCGATGGCG TTATTTTGTGCATCG TERM 703 857668 - 857696 + g 74 -10.3 -3.19186 | opp_overlap 857672, overlap 857667 857665 857669 CCCCCATGCAGGTAT ACCATCGGGGAAT CCG GTTCCTCGATGGC GTTATTTTGTGCATC TERM 704 857669 - 857695 + g 83 -13.8 -2.50789 | opp_overlap 857672, overlap 857668 857667 857665 CCCCATGCAGGTATA CCATCGGGGAAT CCG GTTCCTCGATGG CGTTATTTTGTGCAT Pnec_0989 857822 - 859054 + | Cupin 4 family protein TERM 705 859148 - 859133 - T 82 -4.8 -5.22039 | opp_overlap 859133 GTTAAATCCAAAAAA CAATTA CCGG TAATTG TTGTTAATTTTTTTT TERM 706 859314 - 859285 - T 91 -13.1 -3.14463 | opp_overlap 859285 859295, overlap 859273 859292 AATCTTCTTCATGAA TAAAAAAGCCGCT GAAA AGCAGCTTTTTTA TTTACCCAACAAACC TERM 707 859285 - 859314 + T 81 -10.9 -3.53012 | opp_overlap 859273 859285 859292, overlap 859295 AATCTTCTTCATGAA TAAAAAAGCCGCT GAAA AGCAGCTTTTTTA TTTACCCAACAAACC TERM 708 859307 - 859292 - T 100 -6.8 -5.5112 | opp_overlap 859285 859295, overlap 859285 TTCATGAATAAAAAA GCCGCT GAAA AGCAGC TTTTTTATTTACCCA TERM 709 859295 - 859307 + T 100 -4.8 -5.63517 | opp_overlap 859292 859285, overlap 859285 ATGAATAAAAAAGCC GCTG AAAAG CAGC TTTTTTATTTACCCA Pnec_0990 860480 - 859332 - | NlpBDapX family lipoprotein TERM 710 859527 - 859517 - G 72 -5.4 -4.4195 | opp_overlap 859509 AGAGATTGGAGAAAA TTCC TTT GGAA TCACCAACATCCTTT Pnec_0991 861349 - 860477 - | dihydrodipicolinate synthase Pnec_0993 863203 - 862001 - | tryptophanyl-tRNA synthetase TERM 711 862630 - 862643 + g 78 -6.7 -4.57569 | opp_overlap 862614, overlap 862614 CGTACATCTTGGCAC GCTTG CTAC CAAGC TTTTTGACAGCCTCC TERM 712 862916 - 862896 - G 82 -11.9 -3.33815 | ACTCGCTCCAACCAA CCCAATGGG GTT CCCATTGAG AGCAATAGAAAGAGT Pnec_0994 864101 - 863250 - | PHP domain protein Pnec_0995 865214 - 864111 - | AFG1-family ATPase TERM 713 864811 - 864794 - G 74 -5.5 -4.57474 | opp_overlap 864795 864797, overlap 864784 864795 GCAATCGATACAAAA TCATCGC ATCG GCGATGT CATTGATATGAAACT TERM 714 864810 - 864795 - G 70 -9 -3.33761 | opp_overlap 864795 864797, overlap 864784 864794 CAATCGATACAAAAT CATCGC ATCG GCGATG TCATTGATATGAAAC TERM 715 865178 - 865148 - G 81 -12.7 -3.24747 | opp_overlap 865148 865150 GCTCTACAGCACGAA GCTGCGCGGG-ATCA CCT TGATACCCGCGC-GC TTTTAACTCTTGTTG TERM 716 865148 - 865178 + g 95 -12.7 -4.32048 | opp_overlap 865148, overlap 865150 GCTCTACAGCACGAA GCTGCGCGGG-ATCA CCT TGATACCCGCGC-GC TTTTAACTCTTGTTG TERM 717 865150 - 865177 + g 81 -12.8 -3.18144 | gap 1, opp_overlap 865148, overlap 865148 TCTACAGCACGAAGC TGCGCGGG-ATCA CCT TGATACCCGCGCG CTTTTAACTCTTGTT Pnec_0996 866651 - 865215 - | dihydrolipoamide dehydrogenase TERM 718 866380 - 866410 + g 70 -9.8 -3.09516 | overlap 866385 CGAGCGATCATCTTC TTAGAGTCGGTGCT CAC AGCGCCCACTTTAA TTCCGTGATCGGCAG TERM 719 866385 - 866405 + g 71 -7.5 -3.94002 | overlap 866380 GATCATCTTCTTAGA GTCGGTGCT CAC AGCGCCCAC TTTAATTCCGTGATC Pnec_0997 867827 - 866664 - | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 720 867581 - 867523 - G 83 -13.6 -2.73364 | opp_overlap 867524 867529 867544 867554 TTTGCAGCTGAAGGA GCGGCGGCTGCGCCAGCTTTAGCGGCAG GAG CTGCTGCTTTAGCAGGAGCAGCGGCTAC AACAGCAGTGCTATC TERM 721 867544 - 867560 + g 75 -10.1 -3.53012 | opp_overlap 867523, overlap 867554 GCTGCGCCAGCTTTA GCGGCAG GAG CTGCTGC TTTAGCAGGAGCAGC Pnec_0998 870750 - 867880 - | 2-oxoglutarate dehydrogenase, E1 subunit TERM 722 868057 - 868069 + g 79 -7.7 -4.43844 | opp_overlap 868057 GTGTTGCACGAAGAA CCAAG CAC CTTGG TTTTGTGGCTCATCC TERM 723 869895 - 869915 + g 85 -12.7 -3.36694 | opp_overlap 869894 869893, overlap 869894 ACTCAGCAAACAAGT CTTTAGGCA TCT TGCCTAAAG TATTTACCAATACGT TERM 724 871743 - 871770 + r 95 -12.8 -3.69323 | opp_overlap 871748, overlap 871748 AAGCTCGCAGGAAAG AAAAAGGCCGCT TTCA AGCGGCCTTTTA TTTAAATCCTAATAA TERM 725 871765 - 871748 - R 100 -12.7 -5.33405 | opp_overlap 871743 871748 CGCAGGAAAGAAAAA GGCCGCT TTCA AGCGGCC TTTTATTTAAATCCT TERM 726 871748 - 871765 + r 100 -12.7 -4.9138 | opp_overlap 871748, overlap 871743 CGCAGGAAAGAAAAA GGCCGCT TTCA AGCGGCC TTTTATTTAAATCCT Pnec_1001 872656 - 872243 - | thioesterase superfamily protein TERM 727 872277 - 872292 + g 72 -9 -3.48395 | opp_overlap 872273 872277 CTGAGCATAAAGGTA CCGCTA GATT TAGCGG TTATCTCACCCGCCT Pnec_1002 872906 - 872796 - | putative transcriptional regulator, MerR family TERM 728 872913 - 872896 - G 74 -11.3 -2.79492 | overlap 872895 CCGCTAATCGTAAAG CCGCTCT TCAT AGAGCGG TGAGCAAATTTTTCT Pnec_1003 873145 - 872903 - | putative transcriptional regulator, MerR family Pnec_1004 873446 - 873123 - | integration host factor, alpha subunit TERM 729 873407 - 873392 - G 76 -4.7 -4.74801 | opp_overlap 873392 873394 CAACCTGATCAAAAA GAGCT TCTGAG AGCTC ATTCTTGGTAACGGT Pnec_1005 875968 - 873512 - | phenylalanyl-tRNA synthetase, beta subunit TERM 730 874668 - 874687 + g 78 -6.4 -4.64766 | GCAACAATCTCATTA GTCAATGG AATG CCAATGAC TTTTTCCGCTCTGGC TERM 731 875931 - 875908 - G 71 -9.6 -3.25719 | opp_overlap 875909, overlap 875909 TCATTACATGACCAA GCCCATCACT ATCA AGTGATGGGT TTACATACTGACGGA TERM 732 875909 - 875930 + g 95 -13.1 -3.68351 | opp_overlap 875908 875909 CATTACATGACCAAG CCCATCACT ATCA AGTGATGGG TTTACATACTGACGG TERM 733 875930 - 875909 - G 80 -13.1 -2.5511 | opp_overlap 875909, overlap 875908 CATTACATGACCAAG CCCATCACT ATCA AGTGATGGG TTTACATACTGACGG Pnec_1006 877048 - 876002 - | phenylalanyl-tRNA synthetase, alpha subunit Pnec_1007 877439 - 877074 - | ribosomal protein L20 Pnec_1008 877662 - 877465 - | ribosomal protein L35 Pnec_1009 878299 - 877790 - | translation initiation factor IF-3 Pnec_1010 880279 - 878357 - | threonyl-tRNA synthetase TERM 734 879877 - 879909 + g 73 -2.1 -5.18371 | overlap 879880 GCATTACGGTGCGCG TTACTG-GCTCGTCT CTTTT AG-CGAGCTCAGTCA TTTTCTTTTCTAAAG TERM 735 880359 - 880335 - R 89 -8.4 -4.85782 | opp_overlap 880334 880332 880335 TTTCCCAAAAAGAAA GCGCGGTAGC TTTGG GCATCCGCGC CTCTTTGAAGTCCAT TERM 736 880366 - 880385 + r 78 -5.8 -4.93316 | gap 1 CATCCGCGCCTCTTT GAAGT-CCA TGT TGGCACTTC TTTTTGGTCTTATTC Pnec_1011 882534 - 880498 - | GTP diphosphokinase TERM 737 880720 - 880731 + g 82 -7.2 -4.82154 | TACTAGCAAATCTGC CGGG AATA CCCG TTTTTGCTCTCGGTT TERM 738 882566 - 882577 + r 70 -5.8 -4.35604 | AACTAAAAAATTCTT TCGC CAAT GCGA TTTGTTCTGACTTCA Pnec_1012 884372 - 882549 - | cation diffusion facilitator family transporter TERM 739 882810 - 882830 + g 72 -6.2 -4.24963 | CGGCACTGAAATATC TGGATCGT AATGC ATGATCCA TTTTCCCTCCTTCTG TERM 740 883407 - 883390 - G 78 -4.9 -4.9792 | CAGTCCACATAAAAA GTTTCAC CGTC ATGAAAC ACGTTAGCTGTCTGT TERM 741 884312 - 884331 + g 80 -6.4 -4.84359 | gap 1 AGACTTGTTTGCTAT GGGTG-TGC TTT GCATCGCCC TTTTTATGAGCATGA TERM 742 884434 - 884395 - R 74 -9.5 -3.30124 | opp_overlap 884395, overlap 884400 GCCGAGGGTTTAGAA TGAAATAACGGAATCCC GACATA GTGATCCCATTATTTCA TTCATCTAAATAAAT TERM 743 884476 - 884460 - R 76 -8.7 -3.88583 | opp_overlap 884474 TAAATTGCTTAGAAA CCCGTTG TGT CAACAGG GGCTCCCGTCTTAGC Pnec_1013 885103 - 884453 - | 3-oxoacid CoA-transferase, B subunit Pnec_1014 885852 - 885151 - | 3-oxoacid CoA-transferase, A subunit TERM 744 885623 - 885634 + g 73 -4.4 -4.74103 | TTTTCACCAACATAG GATG CAAC CATC TTTTTCGCTTGACGG TERM 745 885966 - 885983 + H 79 -7 -4.60924 | opp_overlap 885965 TTAGAGCTAAACTAT TAGGGC TTAAAT GCCCTA TTTTTGAGAAATTTC Pnec_1015 886009 - 887679 + | Electron-transferring-flavoprotein dehydrogenase Pnec_1017 888392 - 888799 + | protein of unknown function DUF482 Pnec_1018 888802 - 889071 + | protein of unknown function DUF1289 TERM 746 891796 - 891783 - g 78 -5.3 -5.00616 | GGTTTGGGCAAAAAA TGATG CAGG CATCA TACGGGGTTACATCC Pnec_1021 891298 - 892341 + | acyl-CoA dehydrogenase domain protein Pnec_1022 893525 - 892449 - | tRNA 2-selenouridine synthase Pnec_1025 894318 - 893974 - | protein of unknown function DUF442 TERM 747 894776 - 894766 - R 75 -4.6 -4.99947 | overlap 894767 CCCAACCAAATAAAA CGCC AAT AGCG TACTGACCAAAAAGA Pnec_1027 895247 - 894810 - | protein of unknown function DUF395 YeeE/YedE Pnec_1028 896392 - 895271 - | protein of unknown function DUF395 YeeE/YedE Pnec_1029 896674 - 896414 - | hypothetical protein TERM 748 896464 - 896451 - G 70 -5.2 -4.42386 | TGCTGATTGAGAAAA GCGG TTACAT CCGC CTCATCCTCAGGAAA Pnec_1030 897779 - 896841 - | beta-lactamase domain protein Pnec_1031 898227 - 897790 - | Domain of unknown function DUF1791 Pnec_1032 899979 - 898249 - | 5'-Nucleotidase domain protein Pnec_1033 900654 - 900016 - | hypothetical protein Pnec_1034 901489 - 900674 - | hypothetical protein Pnec_1035 901849 - 901541 - | Sulphur oxidation protein SoxZ TERM 749 901607 - 901621 + g 74 -7 -4.3453 | opp_overlap 901597, overlap 901609 GCTAACAACAATCTT GTCGCC TTT GGCGCC TTTGTATTTAAAGTT Pnec_1036 902352 - 901900 - | twin-arginine translocation pathway signal TERM 750 902057 - 902071 + g 73 -4.2 -4.82901 | overlap 902058 ATAAAGAACTGTGCA GCCAAG GCG CTTGGG TTTTTCTCAACCAAA Pnec_1037 902708 - 902418 - | cytochrome c class I Pnec_1038 902771 - 902935 + | hypothetical protein Pnec_1039 902990 - 903298 + | High potential iron-sulfur protein TERM 751 903334 - 903376 + T 100 -15.9 -3.00525 | gap 1, opp_overlap 903340 903347, overlap 903347 CAGCTAAGTTAGTTC AGC-CAATAAAAAAGACCGC TCAG GCGGTCTTTTTTATTGCGCG TATGATTTAAGAGCC TERM 752 903369 - 903340 - T 100 -16.7 -3.06915 | opp_overlap 903334 903347, overlap 903347 AGTTAGTTCAGCCAA TAAAAAAGACCGC TCAG GCGGTCTTTTTTA TTGCGCGTATGATTT TERM 753 903362 - 903347 - T 100 -10.4 -5.4833 | opp_overlap 903334 903347, overlap 903340 TCAGCCAATAAAAAA GACCGC TCAG GCGGTC TTTTTTATTGCGCGT TERM 754 903347 - 903362 + T 100 -10.4 -5.45652 | opp_overlap 903347 903340, overlap 903334 TCAGCCAATAAAAAA GACCGC TCAG GCGGTC TTTTTTATTGCGCGT Pnec_1040 904099 - 903383 - | cyclic nucleotide-binding protein Pnec_1041 904693 - 904190 - | Methyltransferase type 11 Pnec_1042 905924 - 904716 - | O-succinylhomoserine sulfhydrylase TERM 755 905353 - 905378 + g 72 -10.5 -2.92246 | opp_overlap 905358 AAGCAGTTATCTACA GCAAACAAGGC ACCT GCCTTTTTTGC TATCCTTGAAATTGC TERM 756 905757 - 905737 - G 81 -4.7 -5.09762 | CGTGAATAAATAAAA CCTTGATCA GCA TGAGCAAAG CCATCAGCCGCTAAT TERM 757 905974 - 905949 - R 70 -10.5 -2.53263 | opp_overlap 905952 TTGACCCCGAATTTA GGATTTGCCTC GCAT GAGGCAAATTC CTGTCGCTTTTTAGT TERM 758 905952 - 905971 + r 80 -10.8 -3.3287 | opp_overlap 905949 ACCCCGAATTTAGGA TTTGCCTC GCAT GAGGCAAA TTCCTGTCGCTTTTT Pnec_1043 907523 - 905985 - | amidophosphoribosyltransferase Pnec_1044 908094 - 907528 - | Colicin V production protein TERM 759 907874 - 907863 - G 79 -4.4 -5.10033 | TCAATACAAATAAAA TGAG GAAG CTCA CACCCAAGCTAAGTA Pnec_1045 908900 - 908094 - | Sporulation domain protein Pnec_1046 910139 - 908904 - | FolC bifunctional protein TERM 760 910179 - 910215 + r 71 -10.2 -2.79796 | overlap 910183 TTCAAGGTGGCTAAG CCAAGCCTCTAGGCTA GAAAA TAGTATGGGGGCTTGG TGTGCTGAACTCAAG Pnec_1047 911110 - 910247 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Pnec_1048 911914 - 911117 - | tryptophan synthase, alpha subunit Pnec_1049 913128 - 911935 - | tryptophan synthase, beta subunit Pnec_1050 913835 - 913149 - | Phosphoribosylanthranilate isomerase Pnec_1051 914713 - 913883 - | tRNA pseudouridine synthase A Pnec_1052 916135 - 914717 - | Tfp pilus assembly protein FimV-like protein Pnec_1053 917309 - 916146 - | aspartate-semialdehyde dehydrogenase Pnec_1054 918429 - 917359 - | 3-isopropylmalate dehydrogenase TERM 761 917600 - 917613 + g 71 -3.8 -4.80417 | GCGGAGCCGTGACTT GGCT CATACA AGCC TTTATTATTTTTATC Pnec_1055 919100 - 918453 - | 3-isopropylmalate dehydratase, small subunit Pnec_1056 919339 - 919133 - | hypothetical protein Pnec_1057 920761 - 919352 - | 3-isopropylmalate dehydratase, large subunit TERM 762 919812 - 919834 + g 71 -3.4 -4.87665 | GCACGTTCCATTGCT GAGCGC TTATTAGAGTC GCGCTC TTTTTCTGGATCAGG TERM 763 919887 - 919909 + g 73 -11.2 -2.50545 | overlap 919886 919885 ACCATTTCTGGTGAA GTGCCCCAGG TCA CCTGAGGCGC AATTTCTTCTGCGCG TERM 764 920436 - 920463 + g 93 -10.6 -4.68724 | TCTGGCCCAATGACG TGAACGATCCCC TGAC GGGTGTCGTTCA TTTTGTATTGCGTAA TERM 765 920651 - 920634 - G 80 -9.9 -3.85909 | opp_overlap 920633 920630 CCAGCTAAATTTAAA CCCTCAA ATGC TTGAGGG CTGGTTACCTCATGA Pnec_1058 922092 - 920779 - | citrate synthase I Pnec_1059 922444 - 922175 - | protein of unknown function DUF339 Pnec_1060 923145 - 922441 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein Pnec_1061 924940 - 923162 - | succinate dehydrogenase, flavoprotein subunit Pnec_1062 925310 - 924945 - | succinate dehydrogenase, hydrophobic membrane anchor protein Pnec_1063 925754 - 925335 - | succinate dehydrogenase, cytochrome b556 subunit Pnec_1064 926637 - 925900 - | transcriptional regulator, GntR family Pnec_1065 926788 - 927777 + | malate dehydrogenase Pnec_1066 927790 - 928164 + | hypothetical protein TERM 766 928172 - 928219 + T 100 -15.2 -4.26693 | gap 1, opp_overlap 928187, overlap 928174 928175 928176 928187 AGAATTAATTTCTCA CAT-TGCAATAAAAAAGCCGAGG ATT CCTCGGCTTTTTTATTGCCTATC TTCTTATTTATTTAG TERM 767 928174 - 928217 + T 100 -17.8 -3.7051 | gap 1, opp_overlap 928187, overlap 928172 928175 928176 928187 AATTAATTTCTCACA T-TGCAATAAAAAAGCCGAGG ATT CCTCGGCTTTTTTATTGCCTA TCTTCTTATTTATTT TERM 768 928175 - 928215 + T 100 -22.9 -3.39439 | opp_overlap 928187, overlap 928174 928172 928176 928187 ATTAATTTCTCACAT TGCAATAAAAAAGCCGAGG ATT CCTCGGCTTTTTTATTGCC TATCTTCTTATTTAT TERM 769 928176 - 928214 + T 100 -26.4 -2.62037 | opp_overlap 928187, overlap 928175 928174 928172 928187 TTAATTTCTCACATT GCAATAAAAAAGCCGAGG ATT CCTCGGCTTTTTTATTGC CTATCTTCTTATTTA TERM 770 928187 - 928203 + T 100 -13.7 -5.49234 | opp_overlap 928187, overlap 928176 928175 928174 928172 CATTGCAATAAAAAA GCCGAGG ATT CCTCGGC TTTTTTATTGCCTAT TERM 771 928203 - 928187 - T 100 -13.7 -5.46657 | opp_overlap 928176 928175 928174 928172 928187 CATTGCAATAAAAAA GCCGAGG ATT CCTCGGC TTTTTTATTGCCTAT Pnec_1067 929442 - 928231 - | hypothetical protein Pnec_1068 930218 - 929442 - | protein of unknown function DUF328 Pnec_1069 930304 - 930552 + | aminotransferase, class I and II TERM 772 930773 - 930741 - g 72 -5.6 -4.46267 | overlap 930735 ACAATTGAAGCAAAA GATGCTGCGCTCAA ACGCG TTAAAGGCAGCACC TCCTACAACGACTTT TERM 773 931242 - 931256 + G 70 -10 -3.0894 | GGTCCGCTGGCATTG GCCGAT CTC ATCGGC TTAGATACATGCTTG Pnec_1070 930549 - 931403 + | 3-hydroxybutyryl-CoA dehydrogenase Pnec_1071 931438 - 931755 + | hypothetical protein Pnec_1072 931896 - 932267 + | recombination factor protein RarA TERM 774 932897 - 932907 + G 80 -6.8 -4.57569 | overlap 932891 932891 TAATGCAATGGGTAA CGGT TAC ACCG TTTTTGGCAAGGTGA Pnec_1073 932478 - 933053 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Pnec_1074 933076 - 933885 + | Chorismate binding-like protein Pnec_1076 934624 - 934899 + | anthranilate synthase component I and chorismate binding protein TERM 775 935424 - 935377 - g 100 -31.8 -3.40784 | opp_overlap 935377, overlap 935369 AAGCAAACCCTAGAA TGTTTTTTTGCAGATCGCGCTG CCGG CAGCGCGATCTGCAAAAAAACA TTCTAGGTGCCGGCA TERM 776 935377 - 935424 + G 100 -31.8 -3.35679 | opp_overlap 935369 935377 AAGCAAACCCTAGAA TGTTTTTTTGCAGATCGCGCTG CCGG CAGCGCGATCTGCAAAAAAACA TTCTAGGTGCCGGCA Pnec_1077 934909 - 935430 + | NUDIX hydrolase Pnec_1078 935514 - 936251 + | Leucyltransferase Pnec_1079 936248 - 937006 + | Arginyltransferase Pnec_1080 937003 - 938037 + | Dihydroorotate oxidase Pnec_1081 938132 - 938911 + | transcriptional regulator, IclR family Pnec_1082 939962 - 938946 - | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 Pnec_1083 940968 - 940081 - | protein of unknown function DUF6 transmembrane Pnec_1084 941168 - 941302 + | hypothetical protein TERM 777 941334 - 941316 - f 70 -8.9 -3.25223 | GAGCGATAGCATGAA TAGCGCT AAGAG AGCGCTA GAAGTAAAAGACATT Pnec_1085 941563 - 941718 + | phasin family protein TERM 778 941743 - 941772 + T 100 -15.1 -4.07568 | opp_overlap 941749, overlap 941749 GGAGAAATCTGCAAT GCAAAAGCCCCGA TTAC TCGGGGCTTTTTC TTTTGCAAAGCAAGG TERM 779 941749 - 941766 + T 100 -12.7 -5.45802 | opp_overlap 941749, overlap 941743 ATCTGCAATGCAAAA GCCCCGA TTAC TCGGGGC TTTTTCTTTTGCAAA TERM 780 941766 - 941749 - T 100 -12.7 -4.27584 | opp_overlap 941743 941749 ATCTGCAATGCAAAA GCCCCGA TTAC TCGGGGC TTTTTCTTTTGCAAA Pnec_1086 943600 - 941837 - | dihydrolipoamide dehydrogenase TERM 781 943294 - 943314 + g 77 -11.1 -3.2614 | overlap 943309 TGCCGCTGTACTGCC CTGCAACGG GTG CCGTTGCCG TTGCTGTAGCGACTG Pnec_1087 944905 - 943610 - | catalytic domain of components of various dehydrogenase complexes TERM 782 944050 - 944077 + g 72 -2.6 -5.00616 | opp_overlap 944069, overlap 944052 ATATGAGGTCGTCAC CATCCAGAGAAC TATT GAACTCTGGATA TTTTTTCAGAGCCGC Pnec_1088 947617 - 944921 - | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type TERM 783 945832 - 945816 - G 76 -2.2 -5.32599 | gap 1, overlap 945820 TAGAAAATATAAAAA GGCA-GC ATTG GCACGCC ATGCGTAGAGTAAGA TERM 784 948126 - 948108 - g 79 -7.4 -4.46615 | overlap 948118 GAGGATCAAGCAAAA CTCAGACA AAT TGCCCGAG AACTAGTCGAGCAAC Pnec_1089 947937 - 948221 + | hypothetical protein Pnec_1091 951258 - 950347 - | tRNA pseudouridine synthase B Pnec_1092 951630 - 951262 - | ribosome-binding factor A Pnec_1093 954389 - 951636 - | translation initiation factor IF-2 TERM 785 954143 - 954169 + g 72 -9.4 -3.56643 | CTTGTACAGTGCGTG TACGTCCAGCAG AGT CTGCTTGACGAA TTTCAGAGCTCTCGC TERM 786 954189 - 954201 + g 72 -4.9 -4.56775 | AGAGCTCTCGCGCTT GATTA AAG TAATC TTTTTGCGCGCGCCT Pnec_1094 955884 - 954403 - | NusA antitermination factor TERM 787 954815 - 954825 + g 78 -5.4 -4.76312 | AACAACTGGCGCACA GAAG AGG CTTC TTTTTCGGTCTTCTC Pnec_1095 956372 - 955881 - | protein of unknown function DUF150 TERM 788 955962 - 955950 - G 71 -3.4 -4.86731 | CTCGGCTAAAGAAAA CTCT AATTG AGAG GACTGACCATCGGCA TERM 789 956420 - 956405 - R 100 -9 -5.82388 | opp_overlap 956405 956403 AAATGGCAAAAAAAA TGGGCT TCAA AGCCCA TATTCTCGAAATTCA TERM 790 956405 - 956420 + r 70 -9 -3.23447 | opp_overlap 956405, overlap 956403 AAATGGCAAAAAAAA TGGGCT TCAA AGCCCA TATTCTCGAAATTCA TERM 791 956501 - 956486 - R 93 -9 -4.99435 | overlap 956495 GGTAACAACTAAAAA CAGCAG AAAC CTGCTG CAGGACCAAAATTAT TERM 792 956505 - 956495 - R 72 -6.8 -4.16121 | overlap 956486 TAAAAACAGCAGAAA CCTG CTG CAGG ACCAAAATTATAGCC Pnec_1096 957798 - 956545 - | pseudouridine synthase Pnec_1097 958143 - 957889 - | pseudouridine synthase Pnec_1098 958890 - 958150 - | segregation and condensation protein B Pnec_1099 959352 - 960002 + | Patatin Pnec_1100 960678 - 960031 - | NLP/P60 protein Pnec_1101 962453 - 960816 - | ABC transporter related Pnec_1102 963475 - 962450 - | binding-protein-dependent transport systems inner membrane component TERM 793 963435 - 963449 + g 74 -5.7 -4.57569 | opp_overlap 963421, overlap 963421 ATCCATAGGCTGGCA TAGCC TATGC GGCTA TTTTTAAAACGCTGC Pnec_1103 964548 - 963472 - | binding-protein-dependent transport systems inner membrane component TERM 794 964096 - 964081 - G 76 -9 -3.74872 | AGTGATGGCATCAAA GCGTGA GCCA TCACGC ACCGCTTTAGCGATG Pnec_1104 966416 - 964548 - | extracellular solute-binding protein family 5 Pnec_1105 966467 - 967252 + | short-chain dehydrogenase/reductase SDR TERM 795 968341 - 968357 + G 73 -4.3 -4.84359 | overlap 968340 TGATGACGAAATTTG CGCATTC CGT GAGCGCG TTTTTATGACACTGG Pnec_1106 967355 - 968434 + | MmgE/PrpD family protein Pnec_1107 968461 - 969030 + | HpcH/HpaI aldolase TERM 796 969217 - 969200 - g 74 -5.5 -4.57353 | TCTCACCAGATAAAA TGACGCC TAAT GGCCTCA AGTCGCACCTTGAAG Pnec_1108 969067 - 969285 + | uncharacterized protein UPF0065 TERM 797 969326 - 969310 - T 100 -10.1 -5.68438 | opp_overlap 969310 GCACCAAACAAAAAA GCCAGCA TAG CGCTGGC TTTTTTTCTCAGTTG TERM 798 969310 - 969326 + T 100 -9.4 -5.66684 | opp_overlap 969310 GCACCAAACAAAAAA GCCAGC ATAGC GCTGGC TTTTTTTCTCAGTTG Pnec_1109 969965 - 969345 - | hypothetical protein Pnec_1110 971203 - 969962 - | BNR/Asp-box repeat protein TERM 799 970438 - 970422 - G 76 -2.1 -5.40072 | GTTTGCCGAAAAAAA GCACTAG CGT CTTGGGC ATCATTGACAAAAAC Pnec_1111 972921 - 971200 - | glycosyl transferase, family 39 Pnec_1112 973279 - 973434 + | hypothetical protein TERM 800 974662 - 974625 - T 72 -8.4 -3.66658 | opp_overlap 974632 974635, overlap 974623 AAGACTTTTAAAACA GTTCCAGGGTCTGGAG GCCTAT CTCCAGTCCCTTCAAC GCTTGAGAGCGTATA TERM 801 974748 - 974777 + T 100 -15.3 -3.53343 | opp_overlap 974755, overlap 974755 TGCCTTCGCTGTTAA TAAAAAAGAGACC CTAG GGTCTCTTTTTTA TTTCGCGGGAAAATT TERM 802 974770 - 974755 - T 100 -9 -5.4505 | opp_overlap 974748 974755 GCTGTTAATAAAAAA GAGACC CTAG GGTCTC TTTTTTATTTCGCGG TERM 803 974755 - 974770 + T 100 -9 -5.63517 | opp_overlap 974755, overlap 974748 GCTGTTAATAAAAAA GAGACC CTAG GGTCTC TTTTTTATTTCGCGG Pnec_1115 975018 - 974791 - | hypothetical protein Pnec_1116 975357 - 975034 - | hypothetical protein Pnec_1117 975834 - 975469 - | hypothetical protein Pnec_1121 977933 - 978055 + | pirin domain protein Pnec_1122 978112 - 978204 + | hypothetical protein TERM 804 980517 - 980507 - g 72 -3.2 -4.94972 | overlap 980494 980508 980509 CACTAGAACTAAAAA TCCC AGC AGGA ACTCTTGCCGGTCGC Pnec_1124 979717 - 980697 + | heat shock protein DnaJ domain protein Pnec_1125 980703 - 981005 + | hypothetical protein Pnec_1126 982931 - 981027 - | ABC transporter related TERM 805 982435 - 982451 + g 88 -3.6 -5.7946 | opp_overlap 982435 ATTTCGACTAAAGCA CGCGCT AGAGC AACGCG TTTTTTTGTTCCACC TERM 806 983610 - 983590 - R 100 -13.3 -5.63374 | opp_overlap 983592 GCAAGATTAAAAAAA TAGGGCCCC CAA GGAGCCCTA TCTCAAGACCTAAGA Pnec_1128 984267 - 983635 - | OmpW family protein Pnec_1129 985851 - 984436 - | oxygen-independent coproporphyrinogen III oxidase Pnec_1130 987481 - 985868 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 807 986252 - 986232 - G 76 -4 -5.08824 | gap 1 TTGCCATTCAAAAAA TCGCCGATC AATT GACCGG-GA GCTTCGTAGGTTCCA TERM 808 987103 - 987117 + g 75 -10 -3.60296 | opp_overlap 987103 987100 CGCGCTCAAGAACGA TGGGCT TGA AGCCCA TTTGCGCTAGCACTA TERM 809 987714 - 987737 + G 72 -6.1 -4.27316 | gap 1 ATCAGAAACTGAGCA GCGTATGATG ATTCG CATCAT-CGC TTTTGCATTACAGGC Pnec_1131 987601 - 988146 + | YaeQ family protein Pnec_1132 988156 - 988569 + | protein of unknown function DUF132 Pnec_1133 988580 - 988801 + | hypothetical protein Pnec_1134 988817 - 989008 + | SlyX family protein Pnec_1135 989150 - 989350 + | membrane protein of unknown function Pnec_1136 990330 - 989443 - | AsmA family protein Pnec_1137 991199 - 990402 - | AsmA family protein TERM 810 991602 - 991628 + G 72 -5 -4.56597 | opp_overlap 991623 991624 GATTGCAAAACTGAG GCAGGCAATATG CTA CTTAAAGCCTGC TTTTTGAAGCAAGGC Pnec_1138 991404 - 991682 + | alkylphosphonate utilization operon protein PhnA Pnec_1140 992113 - 992952 + | hypothetical protein TERM 811 993001 - 993030 + T 77 -10.1 -3.53444 | gap 1, opp_overlap 993009, overlap 992960 993001 993009 CAAGTAGATAAGTCT G-AGGAAAACGGTC ATT GACCGTTTTCCGAC TTTCAGCAACCGTAG TERM 812 993001 - 993029 + T 71 -10.3 -2.71924 | opp_overlap 993009, overlap 992960 993001 993009 CAAGTAGATAAGTCT GAGGAAAACGGTC ATT GACCGTTTTCCGA CTTTCAGCAACCGTA Pnec_1141 993238 - 992981 - | hypothetical protein TERM 813 993021 - 993009 - G 83 -9.1 -4.2679 | opp_overlap 992960 993009 993001 993001 TAAGTCTGAGGAAAA CGGTC ATT GACCG TTTTCCGACTTTCAG TERM 814 993009 - 993021 + g 79 -9.1 -4.17089 | opp_overlap 993009, overlap 992960 993001 993001 TAAGTCTGAGGAAAA CGGTC ATT GACCG TTTTCCGACTTTCAG TERM 815 993569 - 993556 - R 91 -8.1 -5.27335 | opp_overlap 993555 TTGGCCAAACAAAAA CCACC CGAA GGTGG CTCATGTTCGCAGCA Pnec_1142 994591 - 993629 - | putative pectin lyase (parallel beta-helix repeat protein) Pnec_1143 994831 - 994613 - | putative pectin lyase (parallel beta-helix repeat protein) Pnec_1144 995677 - 994862 - | hypothetical protein Pnec_1145 996088 - 995903 - | putative signal transduction histidine kinase TERM 816 996004 - 995991 - G 73 -4.5 -4.87786 | TCAACTCGATAAAAA CGCTC TGTC AAGCG GGGTAAATGTTCAGG Pnec_1146 997125 - 996193 - | histidine kinase A domain protein Pnec_1147 997549 - 997100 - | response regulator receiver protein Pnec_1148 998267 - 997563 - | phosphate uptake regulator, PhoU TERM 817 999233 - 999222 - R 73 -4.4 -4.82901 | GTTGGTGGAGAAAAA CTGA TTAT TCAG AGCGGTAAATAGTAA TERM 818 1000277 - 1000263 - R 77 -5 -4.90778 | opp_overlap 1000263 CTCAGCGAAACAAAA TTCCAA TCC CTGGAA TCTGTCCTAGCGTTG TERM 819 1000325 - 1000299 - R 72 -9.5 -3.14564 | gap 1 CTAGCGTTGCAGCAA TGGCTGGCTGAA TATA CTCAGCC-GCCA TCGTCAGAACCAGGA Pnec_1154 1001815 - 1000850 - | phosphate ABC transporter, periplasmic phosphate-binding protein TERM 820 1001180 - 1001198 + g 70 -2.4 -5.08601 | overlap 1001183 ATCCTTATTTTTCAG GGAGATGA AGG TCATCTTG TTTTTCTTAGCATAG TERM 821 1001183 - 1001195 + g 78 -6.3 -4.63592 | overlap 1001180 CTTATTTTTCAGGGA GATGA AGG TCATC TTGTTTTTCTTAGCA Pnec_1155 1001954 - 1002064 + | hypothetical protein Pnec_1156 1002201 - 1002482 + | MltA-interacting MipA family protein Pnec_1157 1002483 - 1002986 + | MltA-interacting MipA family protein Pnec_1159 1004923 - 1003613 - | seryl-tRNA synthetase Pnec_1160 1005634 - 1004951 - | outer membrane lipoprotein carrier protein LolA Pnec_1161 1007953 - 1005641 - | cell divisionFtsK/SpoIIIE TERM 822 1006340 - 1006354 + g 85 -6.4 -5.24416 | CAAGCTAAATGGATT GGTGAG CTT TTCACC TTTTTCTTCTGCTTC TERM 823 1007890 - 1007867 - G 72 -8.8 -3.62597 | gap 1, opp_overlap 1007867 1007869, overlap 1007869 GCGAGCCTCTAATAA GAGGCGGGGCA TCC TGCCCTGCC-C GCCATTTTCTGGGGG TERM 824 1007889 - 1007869 - G 85 -12.5 -3.39288 | opp_overlap 1007867 1007869, overlap 1007867 GAGCCTCTAATAAGA GGCGGGGCA TCC TGCCCTGCC CGCCATTTTCTGGGG Pnec_1162 1007993 - 1008949 + | thioredoxin reductase TERM 825 1009002 - 1008966 - f 100 -18.3 -3.39327 | opp_overlap 1008975, overlap 1008975 TTTTCAGAGTCACAA TAATAAAAACGCCTAGC GAT GCTAGGCGTTTTTATTT GTTACAGCTTATTAC TERM 826 1008993 - 1008975 - f 100 -14.6 -5.34365 | opp_overlap 1008975, overlap 1008966 TCACAATAATAAAAA CGCCTAGC GAT GCTAGGCG TTTTTATTTGTTACA TERM 827 1008975 - 1008993 + F 100 -14.6 -5.47159 | opp_overlap 1008966 1008975 TCACAATAATAAAAA CGCCTAGC GAT GCTAGGCG TTTTTATTTGTTACA TERM 828 1009769 - 1009753 - f 76 -3 -5.28166 | gap 1, overlap 1009754 1009755 CAAAATCAAGAAAAA GCGCCAT GAGG ATGGC-C AAAATCACCCCCACA Pnec_1164 1010155 - 1010691 + | Inorganic diphosphatase TERM 829 1011487 - 1011473 - g 95 -11.4 -4.5442 | CGGTGAACTAGAAAA GGGGTG GAT CACCCC GCCCCAATCTGTCGA Pnec_1165 1010718 - 1012337 + | NAD+ synthetase TERM 830 1012790 - 1012809 + T 100 -13.6 -5.40464 | opp_overlap 1012790 ATTTATTACCTAAAA CAGCGGCT TAAA AGCCGCTG TTTTTATTTGTACTA TERM 831 1012809 - 1012790 - T 100 -13.6 -4.21462 | opp_overlap 1012790 ATTTATTACCTAAAA CAGCGGCT TAAA AGCCGCTG TTTTTATTTGTACTA Pnec_1167 1013484 - 1012864 - | hypothetical protein Pnec_1168 1013822 - 1013466 - | hypothetical protein Pnec_1170 1014702 - 1016393 + | dihydroxy-acid dehydratase TERM 832 1016442 - 1016409 - T 93 -8.9 -5.0133 | opp_overlap 1016415, overlap 1016410 1016415 GATGTTCTGAAAAAA GCAAAAGCCCCTAGC AAAA ACTAGGGGCTTTTTT ATTGCAACAGCATTG TERM 833 1016441 - 1016410 - T 95 -12.4 -3.60316 | opp_overlap 1016415, overlap 1016409 1016415 ATGTTCTGAAAAAAG CAAAAGCCCCTAGC AAAA ACTAGGGGCTTTTT TATTGCAACAGCATT TERM 834 1016415 - 1016436 + T 100 -11.6 -5.4505 | opp_overlap 1016415 1016410 1016409 CTGAAAAAAGCAAAA GCCCCTAG CAAAAA CTAGGGGC TTTTTTATTGCAACA TERM 835 1016436 - 1016415 - T 100 -12.3 -4.86862 | opp_overlap 1016415, overlap 1016410 1016409 CTGAAAAAAGCAAAA GCCCCTAGC AAAA ACTAGGGGC TTTTTTATTGCAACA Pnec_1171 1016947 - 1016474 - | protein of unknown function DUF461 Pnec_1172 1017346 - 1017089 - | hypothetical protein Pnec_1173 1017929 - 1017339 - | hypothetical protein TERM 836 1017991 - 1017971 - R 71 -8.3 -3.53811 | GTCATTCTTGCCAAA TGACATGGC AAA GTCATGTCA ACTCAGTGATTTAGG Pnec_1174 1018378 - 1018040 - | hypothetical protein Pnec_1175 1018556 - 1018380 - | hypothetical protein TERM 837 1018593 - 1018603 + r 70 -6.8 -4.07687 | overlap 1018578 TGATCTGCAAACTTT GCAG AGC CTGC TTTTACCCCCAACAT TERM 838 1019181 - 1019193 + r 74 -7.7 -4.10657 | opp_overlap 1019178 ATAGCCAGTAATTGC CGCAT TAA ATGCG TTTTGCGGCATATAA Pnec_1180 1021345 - 1020977 - | hypothetical protein Pnec_1181 1021850 - 1021479 - | conserved hypothetical secreted protein TERM 839 1021908 - 1021894 - R 73 -4.9 -4.72272 | opp_overlap 1021888 1021894 TTTTGGCATGAAAAA GGGGC TCGCG ACCCC TTTTCTCATTCCCGG TERM 840 1023187 - 1023163 - R 85 -10 -4.21275 | gap 1, overlap 1023178 1023179 TTAATGCACTTAAAA CCGGCTAGCGG CAAA CC-CCAGCCGG TCGGCAAGGAAATTG TERM 841 1024695 - 1024684 - R 75 -4.4 -5.00616 | opp_overlap 1024684 GCGCCGCTCAAAAAA TTGG TGGT CCAA TTGTGCTCAAACCTA TERM 842 1026598 - 1026581 - R 91 -6.3 -5.46657 | opp_overlap 1026581 1026582 1026596, overlap 1026582 CAGGGCAACAAAAAA CCCAATC ACTT GATTGGA TTTTTTGTTTAAGAA TERM 843 1026581 - 1026598 + r 100 -4.1 -5.63517 | opp_overlap 1026581 1026582, overlap 1026582 1026596 CAGGGCAACAAAAAA CCCAATC ACTT GATTGGA TTTTTTGTTTAAGAA TERM 844 1026597 - 1026582 - R 70 -7.6 -3.86909 | opp_overlap 1026581 1026582 1026596, overlap 1026581 AGGGCAACAAAAAAC CCAATC ACTT GATTGG ATTTTTTGTTTAAGA TERM 845 1026582 - 1026597 + r 70 -7.6 -3.97026 | opp_overlap 1026582 1026581, overlap 1026581 1026596 AGGGCAACAAAAAAC CCAATC ACTT GATTGG ATTTTTTGTTTAAGA Pnec_1187 1027644 - 1026625 - | Inositol phosphatase/fructose-16-bisphosphatase TERM 846 1027255 - 1027234 - G 70 -5.1 -4.4267 | overlap 1027237 CTTCAAAACCGAAAA GATCGTTCC AATC GAAACGTTC ACATCAATATTGGAT Pnec_1188 1030300 - 1027691 - | aminopeptidase N Pnec_1189 1030564 - 1030346 - | protein of unknown function UPF0016 Pnec_1190 1030655 - 1030557 - | amino acid permease-associated region TERM 847 1031086 - 1031110 + r 70 -9.9 -2.94144 | overlap 1031083 TTTTTTTGGGGTTTT TCGGCCTCACC TGC GGATAGGCCGA TCATTTCAATGCCAA TERM 848 1031179 - 1031141 - R 70 -3 -4.92385 | overlap 1031136 1031142 1031144 1031145 1031154 CATAGGCAAACAAAA CCATTTGCAATGACAGCA TCA TGCCGCCAATGCCATTCG GGAAGAAGCCGCCAT Pnec_1192 1032760 - 1032011 - | UBA/THIF-type NAD/FAD binding protein TERM 849 1033044 - 1033068 + G 72 -6.5 -4.27316 | gap 1 AAAGGCCGTGATTTA GTAGTG-CGC CCACAA GCGGCACTAC TTTTCCATTGGCACA Pnec_1193 1032783 - 1033376 + | Pyridoxal 5'-phosphate synthase Pnec_1194 1033532 - 1033392 - | hypothetical protein Pnec_1196 1034323 - 1034015 - | hypothetical protein TERM 850 1034764 - 1034784 + G 73 -2.4 -5.16151 | overlap 1034768 GTCAACAGTCAAACT GGTAGCGG CAAAA CTGCAGCC TTTTTATTGCCTTTA Pnec_1197 1034569 - 1036017 + | DEAD/DEAH box helicase domain protein TERM 851 1036081 - 1036102 + F 73 -10.1 -3.05816 | opp_overlap 1036076 1036075 CCGGTGAAATCCATC GGGTGCCAC GCGA GTGGCAACC TTGGCTAAGCGATAC Pnec_1198 1036094 - 1036501 + | chorismate lyase Pnec_1199 1037426 - 1036602 - | Uroporphyrinogen III synthase HEM4 Pnec_1200 1038416 - 1037451 - | porphobilinogen deaminase TERM 852 1037517 - 1037500 - G 79 -9.9 -3.83026 | CCCTGTGAGAGCAAA TCTTGCG CGAC CGCAAGA CCCAATGCTTCTGCA TERM 853 1039126 - 1039140 + G 75 -10 -3.53444 | opp_overlap 1039123 AATCGCGAGCAAGTT GCCAAG GCC CTTGGC TTTGACGGCACCTGC TERM 854 1039491 - 1039510 + G 72 -5 -4.57569 | overlap 1039493 1039494 TGATGCTGTAGATAC TGTGCAAG ATAC CTTGCGTA TTTTTGCAGACATGG Pnec_1201 1038460 - 1039878 + | argininosuccinate lyase Pnec_1202 1039884 - 1040435 + | Tripartite ATP-independent periplasmic transporter DctQ component TERM 855 1041318 - 1041344 + G 73 -2.3 -5.24416 | gap 1, opp_overlap 1041319, overlap 1041319 AAGAGGCCTATCAGA ACACCATGCGTA TTAC TGCG-ATGGTGG TTTTTATTCTCATTG Pnec_1203 1040432 - 1041961 + | TRAP dicarboxylate transporter, DctM subunit TERM 856 1041984 - 1041965 - T 100 -11.4 -5.27335 | CCGGTCAAATAAAAA TGCCCCGC AATT GCAGGGCA TCGCATTTAAAACTT Pnec_1204 1044277 - 1042010 - | Lysine decarboxylase TERM 857 1043016 - 1043004 - G 71 -7.7 -4.00042 | GTGTGCATCAAATAA GCTTC ATT GAAGC AGTCACGGTCTAGTT TERM 858 1043659 - 1043645 - G 70 -10 -3.06183 | opp_overlap 1043647, overlap 1043626 1043647 GCCAGTGTGATCTAA GAGCTG ACC CAGCTC TTCAACAGCATTACA Pnec_1206 1045751 - 1045185 - | deoxycytidine triphosphate deaminase Pnec_1208 1046624 - 1046295 - | formate dehydrogenase, subunit FdhD Pnec_1209 1046778 - 1048448 + | methionyl-tRNA synthetase Pnec_1210 1048552 - 1048740 + | hypothetical protein Pnec_1211 1048733 - 1049608 + | chromosome segregation and condensation protein ScpA TERM 859 1049752 - 1049733 - g 70 -9.3 -3.43722 | opp_overlap 1049731, overlap 1049726 1049731 CCTAGCAAGACAACA TGGCGAC CCTGTC GTCGCCA GCATCTTTGTGAACC TERM 860 1050072 - 1050055 - g 72 -8.5 -3.78156 | AAAGATTACCAACAA CTGATGA TCAT TCATCAG ATGGCCAAACAATTT Pnec_1212 1049605 - 1050456 + | pantoate--beta-alanine ligase Pnec_1213 1050763 - 1050548 - | hypothetical protein TERM 861 1050661 - 1050646 - G 70 -4.8 -4.4518 | opp_overlap 1050646 AAGCAAAATGCAAAA TTTGAA TTGC TTCAAA ATTCTTCAAAGTACC Pnec_1214 1051067 - 1050765 - | protein of unknown function DUF395 YeeE/YedE Pnec_1215 1051411 - 1051274 - | methionyl-tRNA formyltransferase Pnec_1216 1051607 - 1051404 - | hypothetical protein TERM 862 1051542 - 1051523 - G 76 -7.8 -4.36914 | overlap 1051525 CGGGCGGGCAGAAAA CGGCAACG ACTT CATCGCCG CGATCTAAAAAAGCC TERM 863 1051565 - 1051555 - G 72 -3.2 -5.08824 | overlap 1051564 CCGCGATCTAAAAAA GCCT CTA AAGC AGCTTTACCAAAATC Pnec_1217 1052515 - 1051643 - | L-carnitine dehydratase/bile acid-inducible protein F Pnec_1218 1052870 - 1052517 - | formyl-coenzyme A transferase TERM 864 1058002 - 1057982 - H 70 -9.7 -2.89039 | opp_overlap 1057974 AACTAGCCTCAGACA TGGATGTGC TAT GCGCATCCA TCAATCGAGTGTCTG TERM 865 1059138 - 1059128 - g 83 -4.6 -5.4505 | CTCCTTAATAAAAAA CCGA AGC CCGG CAGAGATTTACCTGA TERM 866 1059209 - 1059237 + G 72 -5.2 -4.63172 | gap 1 CTCTCTAGCCTAGTA GGCGCTGGTGGCG CATT CATCACC-GTGCC TTTTATGCTTTGGTG TERM 867 1059544 - 1059507 - g 90 -14.4 -3.16564 | gap 1, opp_overlap 1059507 GGGTGATGCTATTAA TGC-TTGCGGCCTTCAT GTTTA ATGAAAGCCGCAAAGCA TTTGGTTATTGATTA TERM 868 1059507 - 1059544 + G 95 -12.2 -4.11412 | gap 1, opp_overlap 1059507 GGGTGATGCTATTAA TGCTT-GCGGCCTTCAT GTTTA ATGAAAGCCGCAAAGCA TTTGGTTATTGATTA Pnec_1225 1058738 - 1059556 + | protein of unknown function DUF81 Pnec_1226 1059799 - 1059557 - | malonyl-CoA synthase Pnec_1228 1062365 - 1061073 - | Malonyl-CoA decarboxylase TERM 869 1061680 - 1061690 + g 73 -2.4 -5.24129 | TGCGATGGCTGATCA ACGG TCT CCGC TTTTTTATCGACCAA Pnec_1229 1062710 - 1062501 - | transcriptional regulator, LysR family Pnec_1230 1063407 - 1062739 - | transcriptional regulator, LysR family Pnec_1231 1064199 - 1063411 - | prolipoprotein diacylglyceryl transferase Pnec_1232 1064669 - 1064205 - | DNA polymerase III chi subunit HolC Pnec_1233 1066310 - 1064700 - | Leucyl aminopeptidase TERM 870 1064861 - 1064838 - G 71 -8 -3.83864 | AAAACGTGACAAGAA GCAGGCTGCA GTTA CGCTGCCCGC TGGGCGCCCACCAAT Pnec_1234 1066469 - 1067584 + | permease YjgP/YjgQ family protein Pnec_1235 1067581 - 1068741 + | permease YjgP/YjgQ family protein Pnec_1236 1068797 - 1069390 + | transcriptional regulator, LysR family TERM 871 1071140 - 1071150 + G 73 -4 -4.84017 | GCTGCGCAATTAGAG TCTT CTA AAGA TTTTTCTAAAGCATT TERM 872 1072038 - 1072028 - g 74 -5.4 -4.72272 | GGCGCCCAGCAAAAA GCAT ACG ATGC AATTAATCATATTCA Pnec_1238 1070828 - 1072105 + | phosphoribosylamine--glycine ligase Pnec_1239 1072128 - 1072949 + | Coproporphyrinogen oxidase Pnec_1240 1073056 - 1073775 + | nicotinate (nicotinamide) nucleotide adenylyltransferase Pnec_1241 1073821 - 1074213 + | iojap-like protein Pnec_1242 1074234 - 1074641 + | protein of unknown function DUF163 TERM 873 1074807 - 1074787 - g 72 -3.2 -4.98531 | gap 1, overlap 1074788 CCTCTAAATGAAAAA GCGCGC-AC CTAT GTAGAGCGC GTTACCCTTGCAAAA TERM 874 1074835 - 1074824 - g 74 -5.8 -4.57569 | overlap 1074826 TTACCCTTGCAAAAA GTGC GGCG GCAC TCTCCCGCTGGCAAA Pnec_1243 1074646 - 1075269 + | maf protein TERM 875 1076698 - 1076724 + T 74 -9.6 -3.36581 | opp_overlap 1076686 1076705, overlap 1076702 1076705 AGAGGGCAGCTTCCG CCAAGAACAATA CGA TATTGTTCTTAG TTAATTAGGCGTTTG TERM 876 1076702 - 1076720 + T 73 -9 -3.45366 | opp_overlap 1076705, overlap 1076698 1076705 GGCAGCTTCCGCCAA GAACAATA CGA TATTGTTC TTAGTTAATTAGGCG Pnec_1245 1078492 - 1076729 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA TERM 877 1077553 - 1077590 + g 71 -7.2 -4.12532 | opp_overlap 1077553 1077556 1077557, overlap 1077556 1077557 CCATCAATCCAAAAA TCA-TTTCTGCAGCAGTG AGTC CAC-GCTGCAGAGGTTGA TTTATATCTGCCAGA TERM 878 1077556 - 1077586 + g 76 -9.1 -3.67481 | gap 1, opp_overlap 1077553 1077556 1077557, overlap 1077553 1077557 TCAATCCAAAAATCA TTTCTGCAGCAGTG AGTC CAC-GCTGCAGAGG TTGATTTATATCTGC TERM 879 1077557 - 1077585 + g 72 -10.4 -2.79766 | gap 1, opp_overlap 1077556 1077553 1077557, overlap 1077556 1077553 CAATCCAAAAATCAT TTCTGCAGCAGTG AGTC CAC-GCTGCAGAG GTTGATTTATATCTG TERM 880 1078313 - 1078300 - G 79 -2.3 -5.52384 | overlap 1078301 GGCCCACCAAAAAAA CCGGC ACTT GCCAA AGTTTGCTATTGAGC Pnec_1246 1078503 - 1079264 + | glycosyl transferase family 2 Pnec_1247 1079261 - 1080040 + | glycosyl transferase family 2 TERM 881 1080156 - 1080182 + G 72 -5.8 -4.41548 | opp_overlap 1080160 1080161, overlap 1080157 1080161 AATTAGTAAAGCGAG AGAACTTTGGCC TGA GGCCGAATTTCA TTTTCTAGGCTATCG TERM 882 1080161 - 1080177 + G 79 -8.7 -4.26881 | opp_overlap 1080160 1080161, overlap 1080157 1080156 GTAAAGCGAGAGAAC TTTGGCC TGA GGCCGAA TTTCATTTTCTAGGC Pnec_1248 1080055 - 1081212 + | glycosyl transferase family 9 Pnec_1249 1084838 - 1081221 - | DNA polymerase III, alpha subunit TERM 883 1082644 - 1082658 + g 72 -2.8 -5.07486 | overlap 1082636 ATCTTACGATGCTGC GCCA TCTCTTC TGGC TTTTTCTTACCCATC TERM 884 1082941 - 1082927 - G 71 -10 -3.15544 | opp_overlap 1082911 1082922 GCTTAGCTTCACGAA GCATGC CTT GCATGC CGCGGCTTTCTAGCT TERM 885 1083470 - 1083455 - G 71 -6.8 -4.07687 | overlap 1083456 AGCCCTGCTCTAAAA CGCGAC CCAC ATCGCG AATCGCCGCTCTGGC Pnec_1251 1085167 - 1085793 + | glutamyl-tRNA synthetase class Ic TERM 886 1085783 - 1085808 + T 81 -2 -5.57396 | gap 1, overlap 1085789 CAGCCACTCATGCAT GGAGAGGTTAA AGAAC TTAACTT-TCC TTTTTTATTGCTTGT Pnec_1252 1087297 - 1085858 - | DEAD/DEAH box helicase domain protein Pnec_1253 1087711 - 1087304 - | protein of unknown function DUF336 TERM 887 1087512 - 1087525 + g 76 -4.5 -5.06816 | gap 1 TCACGTTTACCCATT GCAGCG GTA CGC-GC TTTTTCTTGAACAAT TERM 888 1088329 - 1088354 + H 78 -5.5 -4.93547 | gap 1, opp_overlap 1088336, overlap 1088331 GGATTTCATCCTAAG C-CCAATATGCC TTT GGCATATTGTTG TTTTTACTTGCTTCA TERM 889 1088331 - 1088351 + H 100 -12.7 -4.54681 | opp_overlap 1088336, overlap 1088329 ATTTCATCCTAAGCC CAATATGCC TTT GGCATATTG TTGTTTTTACTTGCT Pnec_1256 1089258 - 1089953 + | transcriptional regulator, GntR family TERM 890 1092217 - 1092200 - T 84 -8.5 -4.4261 | TCTGGAAGAGCAAAA CTTTCTG GAAT CAGAAAG CGAAAGATGCTTATC TERM 891 1093082 - 1093051 - T 80 -10.2 -3.78141 | overlap 1093044 1093055 TAAAGAAATGGGAAA GGGATGGCGTGATT AGCG AATCACGCCATAGC CCACCATCAACAAGG TERM 892 1093078 - 1093055 - T 86 -14 -2.6704 | overlap 1093051 1093044 GAAATGGGAAAGGGA TGGCGTGATT AGCG AATCACGCCA TAGCCCACCATCAAC Pnec_1258 1093422 - 1093063 - | hypothetical protein TERM 893 1093120 - 1093096 - G 79 -10 -3.75024 | opp_overlap 1093094 1093082 1093119 GCCCACCATCAACAA GGTTCCAGTC AACAA GGCTGGAACC AATCGTTTGGTGGGT TERM 894 1093330 - 1093320 - G 76 -4.6 -4.96848 | TCTGCGATAGAAAAA CACC AAT GGCG CGGCAAAAGTAAGTT Pnec_1259 1093718 - 1093431 - | AzlC family protein Pnec_1260 1094189 - 1093719 - | AzlC family protein Pnec_1261 1094233 - 1094769 + | protein of unknown function UPF0079 TERM 895 1094856 - 1094816 - g 80 -7 -4.7078 | gap 1, opp_overlap 1094815 1094823 1094824 TCAATCACTCAAAAA GGCAAACCCTCAAGACCTC AGCC AAGTTCTTGAGC-TTTGCC CTATTGCTGACAGAG Pnec_1262 1094773 - 1096131 + | N-acetylmuramoyl-L-alanine amidase TERM 896 1096302 - 1096317 + T 84 -4.6 -5.34655 | opp_overlap 1096302 CCACCAGTTATACAA GCCACC TTCG GGTAGC TTTTCTTTTTGGTTG TERM 897 1096413 - 1096455 + T 100 -21.6 -3.17075 | opp_overlap 1096422 1096425, overlap 1096418 1096425 GGCGCTGGGTGACTG TTTAAGCTACAAGCGTCTAG TTA CGGGACGCTTGTAGCTTAAA TTCAGTTGACGACAA TERM 898 1096418 - 1096450 + T 100 -17.1 -3.20991 | opp_overlap 1096422 1096425, overlap 1096413 1096425 TGGGTGACTGTTTAA GCTACAAGCGTCTAG TTA CGGGACGCTTGTAGC TTAAATTCAGTTGAC Pnec_1264 1097996 - 1097874 - | hypothetical protein Pnec_1265 1098614 - 1098054 - | Uncharacterized deoxyribodipyrimidine photolyase-like protein Pnec_1266 1098998 - 1098729 - | hypothetical protein TERM 899 1098854 - 1098838 - G 73 -8 -4.16943 | opp_overlap 1098840 CGCCAGAGCTCAAAA GAGCTC CGCTT GAGCTC TCTACGCATGATGAC Pnec_1267 1099065 - 1099406 + | hypothetical protein Pnec_1268 1099525 - 1099743 + | hypothetical protein Pnec_1270 1101665 - 1100436 - | sodium:dicarboxylate symporter TERM 900 1101206 - 1101185 - G 72 -3 -4.97158 | opp_overlap 1101185, overlap 1101187 CCACACCAAAGAAAA CAGCAAAT ACAACA ATTTGCAG GATTTCGTTTTTCGC TERM 901 1101820 - 1101831 + G 73 -4.4 -4.83615 | TGATTTGGTTAGGCT TAGC AGCA GCTA TTTTTGTGGGGGCTC Pnec_1271 1101804 - 1102445 + | membrane protein-like protein Pnec_1272 1102473 - 1103135 + | Carboxylesterase TERM 902 1103207 - 1103179 - T 85 -10.4 -4.28375 | opp_overlap 1103185, overlap 1103185 CCAAGAGATGCAAAA GAAAAAGGGCTC CAAAT GAGCCCTTTTTG CCAGTGATGTTATTG TERM 903 1103185 - 1103201 + T 91 -9.4 -4.60487 | opp_overlap 1103179 1103185 GATGCAAAAGAAAAA GGGCTC CAAAT GAGCCC TTTTTGCCAGTGATG TERM 904 1103201 - 1103185 - T 100 -9.4 -5.48213 | opp_overlap 1103185, overlap 1103179 GATGCAAAAGAAAAA GGGCTC CAAAT GAGCCC TTTTTGCCAGTGATG Pnec_1273 1104305 - 1103223 - | TRAP dicarboxylate transporter- DctP subunit Pnec_1274 1105691 - 1104345 - | peptidase U62 modulator of DNA gyrase TERM 905 1104623 - 1104634 + g 82 -7.2 -4.84642 | opp_overlap 1104623 1104613 ACAAAGCAGGTAAAC CGCC CCTC GGCG TTTTCTTGCTTTGCA TERM 906 1104915 - 1104886 - G 75 -2.7 -5.1675 | overlap 1104887 CTATCCAGTAAAAAA CTCGAGCGGCGAT ATAA AGCACCGCCTGAA ACTGCCTGCACCAAT TERM 907 1105180 - 1105167 - G 75 -6.7 -4.48072 | ATAGTGACGAGAAAA TGGGT ACCC ACCCA TAAATCCATGACTTG TERM 908 1105521 - 1105509 - G 72 -5.5 -4.4521 | opp_overlap 1105509 ATGACCCAAAAATAA GGTGA CAC CCACC TGCTTATCCAAACTC TERM 909 1106376 - 1106348 - R 100 -18.3 -5.0133 | opp_overlap 1106348 1106353, overlap 1106353 CAGTGCTTTAAAAAA CAAAAGAGTCCGC ATT GCGGACCCTTTTG TTTTGAGACCTCAAC TERM 910 1106348 - 1106376 + r 100 -16.1 -4.09685 | opp_overlap 1106348 1106353, overlap 1106353 CAGTGCTTTAAAAAA CAAAAGAGTCCGC ATT GCGGACCCTTTTG TTTTGAGACCTCAAC TERM 911 1106353 - 1106371 + r 93 -10.2 -5.07652 | opp_overlap 1106353 1106348, overlap 1106348 CTTTAAAAAACAAAA GAGTCCGC ATT GCGGACCC TTTTGTTTTGAGACC TERM 912 1106371 - 1106353 - R 100 -12.4 -5.42198 | opp_overlap 1106348 1106353, overlap 1106348 CTTTAAAAAACAAAA GAGTCCGC ATT GCGGACCC TTTTGTTTTGAGACC Pnec_1276 1106992 - 1106396 - | Exonuclease RNase T and DNA polymerase III TERM 913 1106940 - 1106950 + g 74 -8.2 -3.97444 | overlap 1106938 ATAAGGTGTTCATTG GCGG GGG CCGC TTTGGTTAGTAGTGT TERM 914 1107685 - 1107697 + G 71 -7.7 -3.96148 | ACGTTGTGACTTTGC GAGTC AAG GACTC TTTGTCATGGACGGC Pnec_1277 1107008 - 1108261 + | Ste24 endopeptidase TERM 915 1109174 - 1109142 - g 100 -15 -4.15632 | opp_overlap 1109147, overlap 1109147 AGCAGTAGACAGAAA CGAAATAGCGCCAG AAAGA CTGGCGCTATTTAG ACAACTGCACAACAG TERM 916 1109169 - 1109147 - g 95 -13.5 -4.19648 | opp_overlap 1109147, overlap 1109142 TAGACAGAAACGAAA TAGCGCCAG AAAGA CTGGCGCTA TTTAGACAACTGCAC TERM 917 1109147 - 1109169 + G 90 -13.5 -3.54424 | opp_overlap 1109147 1109142 TAGACAGAAACGAAA TAGCGCCAG AAAGA CTGGCGCTA TTTAGACAACTGCAC Pnec_1278 1108264 - 1109214 + | ribosome small subunit-dependent GTPase A Pnec_1279 1110170 - 1109211 - | cobalamin biosynthesis protein CbiB TERM 918 1109314 - 1109288 - G 74 -10.8 -3.22521 | GCCATACCAATCCAA CTGCAGAGCGCA TAG TGCGCTCAGTAG GCTCAAGACCCACTT TERM 919 1110950 - 1110923 - R 100 -18.6 -3.1875 | opp_overlap 1110923 1110929, overlap 1110929 TATATTCTAAGGCAA CAAAAAGGCGGC CTAG GCCGCCTTTTTG TTTGCATCAAAGCAG TERM 920 1110923 - 1110950 + r 100 -18.6 -3.64703 | opp_overlap 1110923 1110929, overlap 1110929 TATATTCTAAGGCAA CAAAAAGGCGGC CTAG GCCGCCTTTTTG TTTGCATCAAAGCAG TERM 921 1110944 - 1110929 - R 100 -11.8 -5.13741 | opp_overlap 1110923 1110929, overlap 1110923 CTAAGGCAACAAAAA GGCGGC CTAG GCCGCC TTTTTGTTTGCATCA TERM 922 1110929 - 1110944 + r 100 -11.8 -5.30616 | opp_overlap 1110929 1110923, overlap 1110923 CTAAGGCAACAAAAA GGCGGC CTAG GCCGCC TTTTTGTTTGCATCA Pnec_1282 1111364 - 1110969 - | ribosomal protein L19 Pnec_1283 1112244 - 1111498 - | tRNA (guanine-N1)-methyltransferase TERM 923 1111884 - 1111842 - G 87 -10.7 -4.03978 | AATCGCCTATAGAAA GCTGCAAATCAACGTTTCG GTCGA CAAAACGCTGGTCTACAGC CTCATAACGACCACA Pnec_1284 1112847 - 1112293 - | 16S rRNA processing protein RimM Pnec_1285 1113185 - 1112940 - | ribosomal protein S16 TERM 924 1113162 - 1113142 - G 72 -5.3 -4.58663 | overlap 1113143 ACGATGCTGTAAAAA GGGCGCTTC TTA GAACCGCCA CGTGCCAGTCGAATG TERM 925 1113161 - 1113143 - G 70 -8.8 -3.34716 | overlap 1113142 CGATGCTGTAAAAAG GGCGCTTC TTA GAACCGCC ACGTGCCAGTCGAAT Pnec_1286 1113471 - 1113935 + | protein of unknown function DUF306 Meta and HslJ Pnec_1287 1113961 - 1114407 + | putative transmembrane protein TERM 926 1114395 - 1114418 + T 88 -9 -4.45168 | gap 1, opp_overlap 1114395 TTATGAAGCAAAAAA GCTATCC-CAA TAA TTGCGGATAGC TTTGTATTTTCAAGG TERM 927 1114418 - 1114395 - T 100 -9 -5.30155 | gap 1, opp_overlap 1114395 TTATGAAGCAAAAAA GCTATCC-CAA TAA TTGCGGATAGC TTTGTATTTTCAAGG TERM 928 1114435 - 1114450 + T 93 -10.4 -5.15167 | opp_overlap 1114435 TTGTATTTTCAAGGA CCGCTC TTTG GAGCGG TTTTTATTGCTGCTA TERM 929 1114450 - 1114435 - T 71 -10.4 -2.72344 | opp_overlap 1114435 TTGTATTTTCAAGGA CCGCTC TTTG GAGCGG TTTTTATTGCTGCTA Pnec_1288 1116250 - 1114463 - | acyl-CoA dehydrogenase domain protein TERM 930 1115755 - 1115733 - G 77 -9.1 -3.94409 | overlap 1115734 CACACCATCGATAAA TCGGAGCCA GCCTG TGGCTCCGT AAGGTTCATGGTTCC TERM 931 1115754 - 1115734 - G 80 -12.6 -2.96164 | overlap 1115733 ACACCATCGATAAAT CGGAGCCA GCCTG TGGCTCCG TAAGGTTCATGGTTC Pnec_1289 1117247 - 1116312 - | Electron transfer flavoprotein alpha subunit TERM 932 1116948 - 1116966 + g 71 -7.4 -3.92324 | opp_overlap 1116944, overlap 1116949 TTTGGCAGCAACACG CGGCAAGA TGT TCTTGCCA TTTGCTGTTGCAGGA TERM 933 1116949 - 1116965 + g 75 -10.9 -2.95073 | opp_overlap 1116944, overlap 1116948 TTGGCAGCAACACGC GGCAAGA TGT TCTTGCC ATTTGCTGTTGCAGG Pnec_1290 1117997 - 1117248 - | Electron transfer flavoprotein alpha/beta-subunit Pnec_1291 1119706 - 1118054 - | AMP-dependent synthetase and ligase TERM 934 1118307 - 1118287 - G 79 -10.4 -3.61715 | CAGGCTTGGCAACAA CCGCAGCG GCGTT CACTGCGG GATGGCGATACAGCA TERM 935 1118783 - 1118762 - G 71 -10.2 -2.65808 | overlap 1118758 ACCCTCAATAATGGA TGCAGGTG GCGCAG CACCTGCA ATCAAGCCTTTGACG Pnec_1294 1120788 - 1122041 + | lytic murein transglycosylase B Pnec_1298 1123350 - 1122922 - | helix-hairpin-helix motif TERM 936 1123400 - 1123376 - R 91 -6.3 -5.36441 | opp_overlap 1123376 1123391 GTTGTATATAAAAAA TCCACGAACGC AAT GCGAACATGGA TCGTTTACAACGAAT Pnec_1299 1123966 - 1123493 - | hypothetical protein Pnec_1300 1124094 - 1123933 - | hypothetical protein Pnec_1301 1124340 - 1124146 - | hypothetical protein Pnec_1302 1124801 - 1124433 - | hypothetical protein TERM 937 1125126 - 1125104 - R 76 -7.8 -4.25074 | TAGTAAATCGCAAAA TCGACATCCA AAA TGAATATCGA CCAAAAAAATTAAAG Pnec_1303 1126155 - 1125136 - | ADP-L-glycero-D-manno-heptose-6-epimerase Pnec_1304 1127081 - 1126152 - | rfaE bifunctional protein TERM 938 1127069 - 1127088 + g 82 -2.9 -5.60556 | AGAATTGATCTCGGT TTGCTTT TTCCAT AAGGCAA TTTTTATTTTCTGTT Pnec_1305 1128491 - 1127127 - | nucleotide sugar dehydrogenase TERM 939 1127802 - 1127778 - G 73 -11.5 -2.54459 | opp_overlap 1127778 1127781, overlap 1127781 AATATCAGCACCAAC CAAGTCAGCCA AGT TGGCTAACTCG TTCATAAAGGAGATG TERM 940 1127799 - 1127781 - G 73 -9.6 -3.41961 | opp_overlap 1127781 1127778, overlap 1127778 ATCAGCACCAACCAA GTCAGCCA AGT TGGCTAAC TCGTTCATAAAGGAG Pnec_1306 1129720 - 1128509 - | Tetratricopeptide TPR_2 repeat protein TERM 941 1129761 - 1129746 - R 100 -6.8 -5.96894 | ATTTAAATAAAAAAA TGGCCC GAAC GGACCA CTGAGGTTTAGCCTG Pnec_1307 1130125 - 1129781 - | histone family protein DNA-binding protein TERM 942 1129866 - 1129876 + g 73 -4.6 -4.85599 | opp_overlap 1129865 1129866, overlap 1129865 TTGCCAGGCTTAAAG CGTG GAA CGCG TTTTTCTGGAATCAA TERM 943 1130141 - 1130172 + r 71 -8.6 -3.54489 | opp_overlap 1130143, overlap 1130137 1130143 GATCTATCAATAAAA AATCGCCGCCTCCC CAAT GGAAAGCGGCGATA TTGATTTAGCCTTGA TERM 944 1130143 - 1130170 + r 83 -11.2 -3.34267 | opp_overlap 1130143, overlap 1130141 1130137 TCTATCAATAAAAAA TCGCCGCCTCCC CAAT GGAAAGCGGCGA TATTGATTTAGCCTT TERM 945 1130170 - 1130143 - R 100 -15.6 -5.5112 | opp_overlap 1130141 1130137 1130143 TCTATCAATAAAAAA TCGCCGCCTCCC CAAT GGAAAGCGGCGA TATTGATTTAGCCTT Pnec_1308 1131851 - 1130178 - | ribosomal protein S1 Pnec_1309 1132653 - 1132006 - | cytidylate kinase TERM 946 1132323 - 1132313 - G 71 -6.8 -4.10657 | GGAGATTGGCGAAAA CTGC GCT GCAG ACCCACTAAAGCAGA Pnec_1310 1134000 - 1132672 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 947 1132797 - 1132783 - G 70 -10 -3.11476 | overlap 1132769 1132781 1132780 AGCGAGCGAAAAGCA CATCGC CAT GCGATG GTCATCGTAAGTATC TERM 948 1133067 - 1133077 + g 80 -6.8 -4.56597 | TGATGCCATTCAGTT TGCC ATT GGCA TTTTTCACGCCAGCA TERM 949 1133266 - 1133242 - G 77 -10.7 -3.34089 | overlap 1133236 GGCCAAGAAGTAAGA GGCTGAAGAGG CAT CCCCCTCAACC AATAACTGACCCGGG TERM 950 1133757 - 1133730 - G 76 -4.8 -4.88736 | overlap 1133735 CATTACCCATAAAAA GATCAGCTTCCT GCAC AGGGAGCTTACC GCCACAGCCCTCAAC Pnec_1311 1134881 - 1134000 - | Prephenate dehydrogenase TERM 951 1134502 - 1134521 + g 76 -4.2 -5.02074 | gap 1 CCCGCTATTGGGTGT GCCGGCACA AAT TG-GCAGGC TTTTTTACCCAATAC Pnec_1312 1136015 - 1134891 - | histidinol-phosphate aminotransferase TERM 952 1135577 - 1135556 - G 71 -9.5 -3.1211 | gap 1, opp_overlap 1135555 CACCAGACGACTTAA TTGCC-GCCA ACA TGGCTGGCAA ATCATGTCCATAGAT Pnec_1313 1137149 - 1136070 - | chorismate mutase TERM 953 1136860 - 1136848 - G 71 -3.3 -4.82901 | GCTTGCTCAGAAAAA GTGCC AAC GGGAC CAAGATAGGCAATTG Pnec_1314 1138246 - 1137149 - | phosphoserine aminotransferase TERM 954 1138283 - 1138264 - R 100 -13.6 -3.75153 | opp_overlap 1138259 TGTGTCTAATCTAAA GGTGACGC TTAA GCGTCACC TGCCGTATCGTCATT Pnec_1315 1140980 - 1138272 - | DNA gyrase, A subunit TERM 955 1141412 - 1141396 - g 71 -7.3 -4.18934 | TATGACTTCAACAAA TCTGACT TGA AGCCAGA AGGTAAAGCTACTTT Pnec_1316 1141138 - 1141704 + | OmpA/MotB domain protein TERM 956 1141718 - 1141748 + F 100 -21.4 -3.66883 | opp_overlap 1141709 1141725, overlap 1141725 AATTCACTTTACTTG TAGAAAAGCCCGCT TCT AGCGGGCTTTTCTA TTTCCGCTATATTCA TERM 957 1141741 - 1141725 - f 100 -13.7 -4.38712 | opp_overlap 1141718 1141725 TTTACTTGTAGAAAA GCCCGCT TCT AGCGGGC TTTTCTATTTCCGCT TERM 958 1141725 - 1141741 + F 100 -13.7 -4.79451 | opp_overlap 1141725, overlap 1141718 TTTACTTGTAGAAAA GCCCGCT TCT AGCGGGC TTTTCTATTTCCGCT Pnec_1317 1141801 - 1142490 + | ubiquinone biosynthesis O-methyltransferase Pnec_1318 1142641 - 1142793 + | phosphoglycolate phosphatase TERM 959 1143295 - 1143334 + T 100 -16 -4.67353 | opp_overlap 1143303, overlap 1143303 AGTATGTAAAGGCTG CAATAAAACCCTTCTTTC AAAC GAGTGAAGGGTTTTATTG TTTTTGGGTCACTAA TERM 960 1143303 - 1143326 + T 86 -7.4 -5.16681 | opp_overlap 1143303, overlap 1143295 AAGGCTGCAATAAAA CCCTTCTTTC AAAC GAGTGAAGGG TTTTATTGTTTTTGG TERM 961 1143326 - 1143303 - T 73 -5.2 -4.64334 | opp_overlap 1143303 1143295 AAGGCTGCAATAAAA CCCTTCTTTC AAAC GAGTGAAGGG TTTTATTGTTTTTGG Pnec_1319 1144391 - 1143504 - | TPR repeat-containing protein TERM 962 1144190 - 1144166 - G 73 -4.4 -4.8622 | GGTGCGAAGCAAAAA TATTTTGACG CCCTT CACCAAAATA GCCGTTTAAGTTGAC Pnec_1320 1144913 - 1144542 - | TPR repeat-containing protein Pnec_1321 1145195 - 1144953 - | Tetratricopeptide TPR_2 repeat protein Pnec_1322 1145495 - 1145226 - | methyltransferase small Pnec_1324 1146896 - 1145883 - | hypothetical protein TERM 963 1146356 - 1146333 - G 71 -7.4 -3.91911 | gap 1 GTGATTCCAATCAAA GCCTG-CTTGC TTT GCAAGGCGGGC CATAGCCAAGTGACC TERM 964 1147369 - 1147381 + G 70 -9.1 -3.44527 | CGTGGTACCGATGAC CTGGG GCG CCCAG TTGTGATGGTCGATA Pnec_1325 1146985 - 1147761 + | Rhodanese domain protein TERM 965 1147875 - 1147848 - f 100 -15.8 -4.13728 | opp_overlap 1147851 1147855, overlap 1147851 GAGACATGTCTAAAA CAATTAATCGGC AAAA GCCGATTAATTG TCATCCCTGCCCTTT TERM 966 1147851 - 1147872 + F 88 -11.7 -3.4252 | opp_overlap 1147851 1147848, overlap 1147855 ACATGTCTAAAACAA TTAATCGGC AAAA GCCGATTAA TTGTCATCCCTGCCC TERM 967 1147872 - 1147851 - f 95 -11.7 -4.18908 | opp_overlap 1147851 1147855, overlap 1147848 ACATGTCTAAAACAA TTAATCGGC AAAA GCCGATTAA TTGTCATCCCTGCCC Pnec_1326 1147903 - 1148841 + | hypothetical protein Pnec_1327 1148898 - 1149206 + | MmgE/PrpD family protein Pnec_1329 1150244 - 1150639 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Pnec_1332 1151774 - 1151935 + | chromate transporter Pnec_1333 1151957 - 1152172 + | chromate transporter TERM 968 1152186 - 1152176 - f 72 -8.2 -3.89756 | overlap 1152177 ACTTCAAATTAATAA CGGC ACT GCCG CCCATTTATTGACTT Pnec_1334 1152311 - 1153288 + | hypothetical protein TERM 969 1153312 - 1153327 + T 100 -3.9 -5.65927 | opp_overlap 1153312, overlap 1153298 ACACTTAAACACAGA GGGGG CTATTA CTCCC TTTTTTATTTAAGTG Pnec_1335 1153707 - 1153486 - | hypothetical protein Pnec_1336 1154497 - 1153718 - | Extradiol ring-cleavage dioxygenase class III protein subunit B Pnec_1337 1154644 - 1154507 - | hypothetical protein TERM 970 1154564 - 1154554 - G 80 -5.4 -5.04868 | CCAAAGCAAACAAAA TAGC CAA GCTA GTAGCTGCTCCCAAC TERM 971 1154585 - 1154600 + g 77 -3.3 -5.25906 | TGCTCCCAACATCAC GATCA ATGTAA TGATC TTTTTGTTGATTTCT Pnec_1338 1154855 - 1154715 - | hypothetical protein Pnec_1339 1154884 - 1155546 + | peptidase M50 Pnec_1340 1155616 - 1156068 + | cytochrome c prime Pnec_1341 1156754 - 1156074 - | cytochrome B561 TERM 972 1157023 - 1157049 + G 72 -5.8 -4.40963 | overlap 1157014 TGGATTGCGGCCATT GCCTGCTTCATT CAT ATTGCAGTAGGC TTATTTTTGACAGGT Pnec_1342 1156798 - 1158003 + | major facilitator superfamily MFS_1 Pnec_1345 1159564 - 1159875 + | dihydrodipicolinate synthetase Pnec_1346 1159908 - 1160858 + | TRAP transporter solute receptor, TAXI family TERM 973 1160876 - 1160896 + F 100 -9.7 -5.46706 | CAGCATTTGTAGTTA GGGATGAGT TAG ACTCACCCC TTTTTGTTTTAAAGT TERM 974 1160967 - 1160954 - f 71 -5.3 -4.48333 | AGACATGAATCAAAA CGTTA TCGA TAACG AATCCCAAGAAAAAT TERM 975 1161119 - 1161139 + F 70 -6.8 -4.08181 | TGTTCCGACTCAGCA GCTACGTG TGATT CACGTTGC TTTGGTGTTATTTTT TERM 976 1161799 - 1161775 - f 74 -7.1 -4.25256 | overlap 1161772 GGGTTATGAAAAGAA TGCTGCCGG CGGACTT CTGGCAGCA GGCGGCCTGGGCGCG Pnec_1348 1162729 - 1162965 + | TRAP transporter, 4TM/12TM fusion protein TERM 977 1163014 - 1162985 - f 100 -14.5 -3.53444 | opp_overlap 1162988 1162992, overlap 1162988 1162992 GGATCTTCTTTGAAA CAATAAAGCCCAC TATA GTGGACTTTATTG TTAGACAGTAGTGCG TERM 978 1163011 - 1162988 - f 82 -10.4 -3.90744 | opp_overlap 1162988 1162992, overlap 1162985 1162992 TCTTCTTTGAAACAA TAAAGCCCAC TATA GTGGACTTTA TTGTTAGACAGTAGT TERM 979 1163007 - 1162992 - f 77 -6.8 -4.56978 | opp_overlap 1162988 1162992, overlap 1162988 1162985 CTTTGAAACAATAAA GCCCAC TATA GTGGAC TTTATTGTTAGACAG TERM 980 1163376 - 1163366 - f 70 -6.8 -4.14243 | CATCGGATTGCAAAA TGGC AGC GCCA CCAGCATCAATTAAC TERM 981 1165063 - 1165049 - f 79 -2.8 -5.4505 | GGGGTGAATAAAAAA GCATCT CTG AGATCC CTGCTGAGTAGGAGT TERM 982 1165451 - 1165478 + G 72 -9.2 -3.51708 | gap 1, opp_overlap 1165452, overlap 1165447 1165452 ACATTTTTTGATCAT ATGCGT-GGGGAT TGC ATCCCCTACGCAG TTGCTTTCGGAAGTC TERM 983 1165452 - 1165477 + G 78 -12.7 -2.70704 | gap 1, opp_overlap 1165452, overlap 1165451 1165447 CATTTTTTGATCATA TGCGT-GGGGAT TGC ATCCCCTACGCA GTTGCTTTCGGAAGT TERM 984 1165477 - 1165452 - g 79 -12.7 -2.78596 | gap 1, opp_overlap 1165452 1165451 1165447 CATTTTTTGATCATA TGCGT-GGGGAT TGC ATCCCCTACGCA GTTGCTTTCGGAAGT Pnec_1351 1165088 - 1166491 + | Peptidase M23 TERM 985 1166547 - 1166532 - T 91 -6.8 -5.46657 | opp_overlap 1166532 CACTGCAATAAAAAA GGATCC AGAT GGACCC TTTTGCTAAGTGAAG Pnec_1352 1167009 - 1166569 - | UspA domain protein Pnec_1353 1167096 - 1167497 + | hypothetical protein TERM 986 1168119 - 1168166 + G 72 -2.7 -4.98531 | opp_overlap 1168128, overlap 1168130 GATGGCTATCTCATC TTCCAGCAACAGTGGTTGC AATGGTGGCA GCAACCACTGTTACCAGCA TTTTTCATTTACCAG Pnec_1354 1167515 - 1169140 + | sulphate transporter Pnec_1355 1169856 - 1169137 - | putative transmembrane protein TERM 987 1169319 - 1169303 - G 90 -9.5 -4.5032 | GAGATCAACAACAAA TTGGGTA AGG TACCCAA ACCAAATGCCAACAT TERM 988 1169689 - 1169667 - G 72 -8.4 -3.79678 | overlap 1169669 AAGCCCCCAGAAGAA CATAGGTCGC AAT GCGACCTAAA TGCATAATGAACTGC TERM 989 1169687 - 1169669 - G 90 -13.2 -3.4811 | overlap 1169667 GCCCCCAGAAGAACA TAGGTCGC AAT GCGACCTA AATGCATAATGAACT TERM 990 1170044 - 1170028 - g 70 -9.5 -3.11687 | opp_overlap 1170026 CTAAGCAGTAGCGAA GTGTCAA AAA TTGACAC CCTAGTTAAAGAACG TERM 991 1170376 - 1170348 - g 82 -11.9 -3.32268 | GAATCAGTTTCATAA GATCATGAGTC GCGAATT GACTCATGATC AACGCCATTTACTTT Pnec_1356 1169935 - 1170705 + | transcriptional regulator, Crp/Fnr family Pnec_1357 1170962 - 1170702 - | putative transmembrane protein Pnec_1358 1171162 - 1170959 - | hypothetical protein Pnec_1359 1172645 - 1171188 - | cytochrome c oxidase accessory protein CcoG TERM 992 1171592 - 1171579 - G 76 -2.3 -5.28755 | AAAGATACCAAAAAA GCGCC CGTG AGCAC AGTAATAAACACGGT Pnec_1360 1173584 - 1172658 - | cytochrome c oxidase, cbb3-type, subunit III Pnec_1361 1173748 - 1173581 - | hypothetical protein TERM 993 1173713 - 1173695 - G 86 -5.2 -5.46657 | GATTCCAATAAAAAA TACCAAGC CAA GCACGGTA GATATTGCTGAGAGG Pnec_1362 1174415 - 1173768 - | cytochrome c oxidase, cbb3-type, subunit II TERM 994 1173948 - 1173963 + g 71 -6.8 -4.11216 | ATGAGATGAAATCGT GTCAGC AGCA GCTGGC TTTTGCAAATAGGGA Pnec_1363 1175901 - 1174426 - | cytochrome c oxidase, cbb3-type, subunit I Pnec_1364 1176214 - 1176035 - | cytochrome oxidase maturation protein, cbb3-type Pnec_1365 1178656 - 1176224 - | heavy metal translocating P-type ATPase TERM 995 1176834 - 1176818 - G 70 -9.5 -3.07935 | ACCGTATTGACCCAA TTGAGCA CCC TGCTCAA CCCCAAGCCATAAAG TERM 996 1178994 - 1178984 - H 73 -2.6 -5.15634 | GACTGCATGAAAAAA TAAA TCA TTTA CCAGTAACCTGCTGC Pnec_1366 1179150 - 1179959 + | hypothetical protein TERM 997 1180033 - 1179990 - T 76 -10.5 -3.40565 | gap 1, overlap 1179991 AAGCATCAACATTAA TTTCCATTGCCAAGAGCC AGTACGAAA GGCTCTTGGC-ATGGGAA TCCAAATTCAAAGAA TERM 998 1180033 - 1179991 - T 79 -12.1 -2.63616 | overlap 1179990 AGCATCAACATTAAT TTCCATTGCCAAGAGCC AGTACGAAA GGCTCTTGGCATGGGAA TCCAAATTCAAAGAA Pnec_1367 1180296 - 1179973 - | hypothetical protein TERM 999 1181060 - 1181035 - R 80 -8.3 -4.17657 | gap 1, overlap 1181036 CACCACACTCCAAAA GGTGTCCTGCCA TAG TGGCAGCAC-CC AAGAAAGCCCAATCA Pnec_1370 1182369 - 1181671 - | hypothetical protein Pnec_1371 1183788 - 1182487 - | TRAP transporter solute receptor, TAXI family TERM 1000 1183216 - 1183239 + g 77 -11.1 -3.17714 | TGCCGCATCCAACTC GCCATTGCT TAACTT AGCAATGGC TTCATCGGGCTTTAA Pnec_1375 1185854 - 1184655 - | cytochrome c-type biogenesis protein CcmI TERM 1001 1185422 - 1185442 + g 73 -2.5 -5.24531 | GATCTTTTTCCATCT TGATGGC AAATTCA GCCACCA TTTTTTCTACACCCT TERM 1002 1185741 - 1185755 + g 71 -7.8 -3.92324 | TGCAGCATTCATCTG GCGACG TGA TGTCGC TTTACTCTTGGCGGG Pnec_1376 1186324 - 1185851 - | cytochrome C biogenesis protein Pnec_1377 1186848 - 1186321 - | periplasmic protein thiol--disulphide oxidoreductase DsbE Pnec_1378 1188764 - 1186845 - | cytochrome c-type biogenesis protein CcmF Pnec_1379 1189195 - 1188761 - | CcmE/CycJ protein Pnec_1380 1189380 - 1189192 - | heme exporter protein CcmD Pnec_1381 1190150 - 1189380 - | heme exporter protein CcmC Pnec_1382 1190812 - 1190147 - | heme exporter protein CcmB Pnec_1383 1191414 - 1190809 - | heme exporter protein CcmA TERM 1003 1191533 - 1191546 + r 85 -8.1 -4.68545 | opp_overlap 1191533, overlap 1191528 CTAAGATTAAAAAAA CCACC CGAA GGTGG TTTTCTCTATTAAAT TERM 1004 1191546 - 1191533 - R 100 -8.1 -5.63374 | opp_overlap 1191528 1191533 CTAAGATTAAAAAAA CCACC CGAA GGTGG TTTTCTCTATTAAAT TERM 1005 1191648 - 1191674 + r 77 -9.5 -3.68827 | gap 1 AGTCACCCGCATTTA CCTCGTCTGCAC TCGC GT-CAGACGGGG TTTGCATCATCGCTC Pnec_1386 1192576 - 1192163 - | DoxX family protein Pnec_1387 1193028 - 1192600 - | transcriptional regulator, MarR family TERM 1006 1192839 - 1192853 + g 72 -2.8 -5.00884 | overlap 1192841 CGCCCGTAAGAGTAC CTTTTG TAA CCAAAG TTTTTTCACCCAACT TERM 1007 1193095 - 1193113 + r 85 -11 -3.77666 | opp_overlap 1193095 CCAGGCAATAAAAAA CCCCACAG CAT TTGTGGGG TTTAAGTTAAATCTA TERM 1008 1193113 - 1193095 - R 100 -10.3 -5.4833 | opp_overlap 1193095 CCAGGCAATAAAAAA CCCCACA GCATT TGTGGGG TTTAAGTTAAATCTA Pnec_1388 1193455 - 1193126 - | beta-lactamase domain protein Pnec_1389 1193674 - 1193483 - | beta-lactamase domain protein TERM 1009 1193737 - 1193751 + r 87 -10 -4.386 | opp_overlap 1193726 1193737 1193745, overlap 1193732 1193745 AGAACTTCAAGCATA TGACGC AAT GCGTCA TTTTGTGAAGCATTA TERM 1010 1193751 - 1193737 - R 72 -10 -2.92513 | opp_overlap 1193732 1193737 1193745, overlap 1193726 1193745 AGAACTTCAAGCATA TGACGC AAT GCGTCA TTTTGTGAAGCATTA Pnec_1390 1194174 - 1193764 - | hypothetical protein Pnec_1391 1194385 - 1194251 - | hypothetical protein Pnec_1392 1194386 - 1194637 + | hypothetical protein Pnec_1393 1194634 - 1195533 + | histone deacetylase superfamily Pnec_1394 1196019 - 1195552 - | hypothetical protein TERM 1011 1196232 - 1196211 - R 100 -8.7 -5.4433 | ATAGACAAAGAAAAA CCCCAGCCA TCGC TAGCTGAGG TTCAAATCACTCTGA Pnec_1395 1196976 - 1196290 - | putative lipoprotein Pnec_1396 1197121 - 1196957 - | hypothetical protein Pnec_1397 1197216 - 1197893 + | protein of unknown function DUF1345 TERM 1012 1197965 - 1197928 - T 100 -17.3 -2.54371 | opp_overlap 1197938, overlap 1197932 1197938 AACGAGTTCAATGTA CAAATAAAAACACTCGC ATCA GCGAGTGTTTTTATTGG CGATGGGCCTTATTA TERM 1013 1197961 - 1197932 - T 100 -16.7 -3.97636 | opp_overlap 1197938, overlap 1197928 1197938 AGTTCAATGTACAAA TAAAAACACTCGC ATCA GCGAGTGTTTTTA TTGGCGATGGGCCTT TERM 1014 1197955 - 1197938 - T 100 -11.3 -5.38958 | opp_overlap 1197938, overlap 1197932 1197928 ATGTACAAATAAAAA CACTCGC ATCA GCGAGTG TTTTTATTGGCGATG TERM 1015 1197938 - 1197955 + T 100 -11.3 -5.07486 | opp_overlap 1197938 1197932 1197928 ATGTACAAATAAAAA CACTCGC ATCA GCGAGTG TTTTTATTGGCGATG Pnec_1400 1199395 - 1199156 - | hypothetical protein Pnec_1401 1200111 - 1199590 - | hypothetical protein TERM 1016 1200209 - 1200186 - H 72 -7.4 -4.04174 | opp_overlap 1200186 GCTCAGAGAATGAAA TGCCCCCG GAAGCTAG CAGGGGCA ATTTACGCTGCCTGG Pnec_1402 1200374 - 1200937 + | peroxiredoxin TERM 1017 1200977 - 1200955 - f 86 -13.6 -2.53911 | opp_overlap 1200957 1200959, overlap 1200959 1200971 1200973 TGAATCTCTAATCCA TAGACTCTCT TTA AGAGAGTCTA TTGGAGAGGACAAGA TERM 1018 1200957 - 1200975 + F 81 -11.8 -3.01712 | opp_overlap 1200955 1200959 1200971 1200973, overlap 1200959 AATCTCTAATCCATA GACTCTCT TTA AGAGAGTC TATTGGAGAGGACAA TERM 1019 1201009 - 1200971 - f 100 -16.2 -3.02263 | opp_overlap 1200959 1200957, overlap 1200959 1200955 1200973 AGACTCTCTTTAAGA GAGTCTATTGGAGAGGAC AAG ATCCTGCCCAATAGACTC ACCTAAAAAATACCC TERM 1020 1201007 - 1200973 - f 86 -13 -3.06815 | opp_overlap 1200957, overlap 1200955 1200971 ACTCTCTTTAAGAGA GTCTATTGGAGAGGAC AAG ATCCTGCCCAATAGAC TCACCTAAAAAATAC TERM 1021 1202237 - 1202224 - g 74 -3.8 -5.07652 | TGTTGCAAAAGAAAA TGGC CAGTAT GCCA AACGTCACCGTCATC Pnec_1403 1201038 - 1202615 + | alkyl hydroperoxide reductase, F subunit TERM 1022 1202670 - 1202641 - T 71 -8.7 -3.55548 | opp_overlap 1202647 1202649, overlap 1202647 GAAGATCGTGGCAAA TCAAAAGAGAGTC TTTC GACTCCCTTTTTA TACTCAATCATCCAG TERM 1023 1202664 - 1202647 - T 82 -7.7 -4.54727 | opp_overlap 1202647 1202649, overlap 1202641 CGTGGCAAATCAAAA GAGAGTC TTTC GACTCCC TTTTTATACTCAATC TERM 1024 1202647 - 1202664 + T 78 -5.5 -4.9218 | opp_overlap 1202647 1202641, overlap 1202649 CGTGGCAAATCAAAA GAGAGTC TTTC GACTCCC TTTTTATACTCAATC Pnec_1404 1202927 - 1202688 - | hypothetical protein Pnec_1405 1203064 - 1202936 - | hypothetical protein Pnec_1406 1203828 - 1204061 + | hypothetical protein TERM 1025 1205261 - 1205231 - T 71 -4.7 -4.67109 | gap 1, overlap 1205232 1205234 CAAAATAAAAAAATA GTATGCTGCATTGC TCAG GCGATGCAGCAG-C AGATATTGGACTAAA TERM 1026 1205259 - 1205234 - T 83 -11.9 -3.18812 | overlap 1205231 1205232 AATAAAAAAATAGTA TGCTGCATTGC TCAG GCGATGCAGCA GCAGATATTGGACTA TERM 1027 1205759 - 1205784 + T 100 -14.9 -3.53761 | opp_overlap 1205764, overlap 1205764 TGGTCGTACTGTCAA TAAAAGCCACC CGAA GGTGGCTTTTA TTTAGAGCAAAATTA TERM 1028 1205779 - 1205764 - T 91 -10.4 -4.64676 | opp_overlap 1205759 1205764 GTACTGTCAATAAAA GCCACC CGAA GGTGGC TTTTATTTAGAGCAA TERM 1029 1205764 - 1205779 + T 91 -10.4 -4.86731 | opp_overlap 1205764, overlap 1205759 GTACTGTCAATAAAA GCCACC CGAA GGTGGC TTTTATTTAGAGCAA Pnec_1408 1206337 - 1205813 - | hypothetical protein TERM 1030 1206010 - 1205991 - G 74 -3.5 -5.01553 | opp_overlap 1205991 1206001 1206006, overlap 1205982 1206000 1206001 AATGCAGAAACAAAA GCTTCAG AACCAG CAGAAGC TGTCTTAGTAGCTTC TERM 1031 1206465 - 1206489 + H 70 -6.5 -4.26871 | opp_overlap 1206465 ATATTTTTCCTAAAA CCGCATTTAGA GGC TTTAAATGGGG TTTATTAGTGGGTTA Pnec_1409 1206527 - 1206634 + | hypothetical protein Pnec_1410 1207281 - 1206586 - | nitroreductase TERM 1032 1209515 - 1209490 - R 100 -12.7 -5.24129 | opp_overlap 1209488 GGCCTTCACAAAAAA CGACTTAGGAA TTTC TCCCTAAGTCG CCGTTAATGCTGGTG Pnec_1413 1209863 - 1209588 - | hypothetical protein Pnec_1414 1210284 - 1210051 - | hypothetical protein Pnec_1415 1210361 - 1210744 + | hypothetical protein TERM 1033 1210795 - 1210776 - T 100 -6.4 -5.69262 | TCATAAAAACAAAAA CCCCACCA TTTC TGATGAGG GCTTGCTTTTCTGGT Pnec_1416 1213598 - 1210896 - | RNA polymerase, sigma 70 subunit, RpoD TERM 1034 1212527 - 1212490 - G 76 -8.3 -4.13591 | opp_overlap 1212489 1212491, overlap 1212479 1212491 1212493 TCAACAGTAGATAAA GCAGCTTCAGCCTCTTC TTCT GAAGCGGCTGCTGCTGT ATTGTCAGAAAGGAT TERM 1035 1212526 - 1212491 - G 78 -11.8 -3.07431 | opp_overlap 1212489 1212491, overlap 1212479 1212490 1212493 CAACAGTAGATAAAG CAGCTTCAGCCTCTTC TTCT GAAGCGGCTGCTGCTG TATTGTCAGAAAGGA TERM 1036 1212491 - 1212526 + g 79 -11.8 -3.21276 | opp_overlap 1212479 1212491 1212490 1212493, overlap 1212489 CAACAGTAGATAAAG CAGCTTCAGCCTCTTC TTCT GAAGCGGCTGCTGCTG TATTGTCAGAAAGGA TERM 1037 1213750 - 1213761 + r 100 -5.8 -5.75945 | opp_overlap 1213750 GAACAGAGGATTATA GTCG ATTG CGAC TTTTTTTTACCCCCT Pnec_1417 1215793 - 1213835 - | DNA primase TERM 1038 1215702 - 1215674 - G 74 -8.1 -3.90112 | opp_overlap 1215675, overlap 1215675 CTTCTCTGAATGAAA GGGGCACAAACCT TGA AAGTTCGCGCCCG CTTTTTTTAGTTTTA TERM 1039 1215701 - 1215675 - G 77 -11.6 -2.93853 | opp_overlap 1215675, overlap 1215674 TTCTCTGAATGAAAG GGGCACAAACCT TGA AAGTTCGCGCCC GCTTTTTTTAGTTTT Pnec_1418 1216264 - 1215818 - | GatB/YqeY domain protein TERM 1040 1216354 - 1216330 - R 100 -9.3 -5.1971 | gap 1, opp_overlap 1216330 ATTAAAAAGCAAAAA CCCGCTG-CG TTTCAC CGTCAGCGGG TTTTAAAGCTTCTCG TERM 1041 1216330 - 1216354 + r 82 -9.3 -4.1585 | gap 1, opp_overlap 1216330 ATTAAAAAGCAAAAA CCCGCTG-CG TTTCAC CGTCAGCGGG TTTTAAAGCTTCTCG Pnec_1419 1216604 - 1216392 - | ribosomal protein S21 TERM 1042 1217708 - 1217686 - g 75 -6.2 -4.44608 | opp_overlap 1217687, overlap 1217683 1217687 GCTAGCCAAAAATAA TGGCTCCACA ACA TCTGGAGCCT TTGATATCAAACCCC TERM 1043 1217707 - 1217687 - g 71 -9.7 -3.26042 | opp_overlap 1217687, overlap 1217686 1217683 CTAGCCAAAAATAAT GGCTCCACA ACA TCTGGAGCC TTTGATATCAAACCC TERM 1044 1217687 - 1217707 + G 79 -9.7 -3.83026 | opp_overlap 1217687 1217686 1217683 CTAGCCAAAAATAAT GGCTCCACA ACA TCTGGAGCC TTTGATATCAAACCC Pnec_1420 1216682 - 1217755 + | metalloendopeptidase, glycoprotease family Pnec_1421 1218605 - 1217778 - | protein of unknown function DUF198 TERM 1045 1218173 - 1218183 + g 82 -6.8 -4.87803 | ATTCCACGTCAGCAT TGCC ATT GGCA TTTTGTTTGACAGTG TERM 1046 1218233 - 1218254 + g 78 -5.1 -5.0133 | gap 1, overlap 1218234 1218236 AATCCATCAAGCTTT CCA-CGCCAG AAA CTGGCGCTGC TTTTTTCACAAAGTG TERM 1047 1218236 - 1218250 + g 73 -11.4 -2.62111 | overlap 1218234 1218233 CCATCAAGCTTTCCA CGCCAG AAA CTGGCG CTGCTTTTTTCACAA Pnec_1422 1220532 - 1218631 - | deoxyxylulose-5-phosphate synthase TERM 1048 1218852 - 1218827 - G 74 -8.3 -3.91488 | gap 1, overlap 1218815 AAGGCTTCTAAACAA GCG-CTACTGGC GCC GCCAGCAATCGC ACCATCTTCAATCGT TERM 1049 1219861 - 1219845 - G 74 -8.7 -3.91897 | overlap 1219846 TGGTCGATGGAGAAA CCATGCC CTT GGCATGA TCCTCAAGGCGCTTT TERM 1050 1219860 - 1219846 - G 70 -10 -2.94924 | overlap 1219845 GGTCGATGGAGAAAC CATGCC CTT GGCATG ATCCTCAAGGCGCTT TERM 1051 1220476 - 1220490 + g 70 -2.1 -5.06451 | CGCTAAAGCCGGCAG CTCTT CGCGC GAGAG TTTTTTGAGATCGTC Pnec_1423 1221468 - 1220566 - | Polyprenyl synthetase Pnec_1424 1221701 - 1221468 - | Exonuclease VII small subunit Pnec_1425 1221864 - 1222970 + | Rieske (2Fe-2S) domain protein Pnec_1426 1223028 - 1223858 + | Rhodanese domain protein Pnec_1427 1224648 - 1223875 - | zinc/iron permease TERM 1052 1224342 - 1224363 + g 83 -13.1 -3.23692 | CGGCGTCATGCCCAT GGTGATGGT GATG ACCATCACC TTCGTGATGATGGTC TERM 1053 1224650 - 1224666 + r 79 -5.1 -5.06414 | overlap 1224665 TGTAAAACTGACATG CGGATTA AGC TACTCCG TTTTTCTTGAACCAA Pnec_1429 1228381 - 1225553 - | DNA polymerase I TERM 1054 1227281 - 1227294 + g 84 -5.3 -5.41746 | opp_overlap 1227281 GTCAACCGCAGTCAA TTGAG AAGA CTCAA TTTTTTTCAACCATT Pnec_1430 1228463 - 1228870 + | putative transmembrane protein TERM 1055 1229296 - 1229286 - g 74 -5.4 -4.57837 | AGATGTTGGCAAAAA TGCA TCT TGCA GGAAAAGATTTTCCA Pnec_1431 1228892 - 1229866 + | homoserine kinase TERM 1056 1230337 - 1230355 + G 70 -5.2 -4.4959 | overlap 1230339 GTTCCGGTGGCAATG TTGGTGTG GTT CTCACCGA TTTTAATTGCTTGGG Pnec_1432 1229863 - 1230642 + | putative transmembrane protein Pnec_1433 1233017 - 1230651 - | UvrD/REP helicase TERM 1057 1231455 - 1231443 - G 76 -7.7 -4.24342 | opp_overlap 1231443 CTCTTCAGCAATAAA TGCAG TTG CTGCA TTAATTAATTCCTGC TERM 1058 1235686 - 1235670 - g 73 -4.3 -4.82901 | GCTGCGCTAGAAAAA GATGCGC CTG GAGCACC AATTGCCTTGGTGGG TERM 1059 1235880 - 1235868 - g 78 -4.8 -5.06414 | GTTGCCCAAGAAAAA CAGC GTCTT GCTG GCTTTGAGCAAAATC Pnec_1434 1233042 - 1235933 + | valyl-tRNA synthetase Pnec_1435 1235965 - 1236849 + | UTP-glucose-1-phosphate uridylyltransferase TERM 1060 1236868 - 1236885 + T 100 -11.3 -5.2422 | opp_overlap 1236868 GCTTTTGGCTGAAAA GGCAGAG AGAT CTCTGCC TTTTTTAATGTGATT TERM 1061 1236885 - 1236868 - T 91 -11.3 -4.07568 | opp_overlap 1236868 GCTTTTGGCTGAAAA GGCAGAG AGAT CTCTGCC TTTTTTAATGTGATT Pnec_1436 1237154 - 1236909 - | SirA family protein Pnec_1437 1239775 - 1237151 - | alanyl-tRNA synthetase TERM 1062 1238668 - 1238687 + g 72 -10.8 -2.8007 | overlap 1238663 1238672 CGTTAGCAATCGTTT GGAAGAAG CGCT CTTCTTCC TGCTTAATCACTTCA TERM 1063 1239885 - 1239867 - H 76 -3 -5.19251 | overlap 1239871 CAACATCAATAAAAA TCGACAGC TAA GCCGACAA AAAGGAGAGCAACTT Pnec_1438 1239899 - 1240360 + | protein of unknown function DUF1468 TERM 1064 1240741 - 1240753 + G 71 -7.7 -3.93782 | GCTCATTCTTTGCAG GTTGC GTA GCAAC TTTAGTGTTAGCTGC Pnec_1439 1240380 - 1241882 + | protein of unknown function DUF112 transmembrane TERM 1065 1241900 - 1241932 + F 76 -8.6 -3.95073 | gap 1, opp_overlap 1241907, overlap 1241907 CCCGCATCCTCTCCA GAAACAAGCCCGC AGCAGTTC GCGGGCTT-TTTC TTTATGGGTCTCGGG TERM 1066 1241907 - 1241926 + F 95 -7.8 -5.38958 | opp_overlap 1241907, overlap 1241900 CCTCTCCAGAAACAA GCCCGC AGCAGTTC GCGGGC TTTTTCTTTATGGGT TERM 1067 1241926 - 1241907 - f 78 -8.5 -4.06419 | opp_overlap 1241907 1241900 CCTCTCCAGAAACAA GCCCGCA GCAGTT CGCGGGC TTTTTCTTTATGGGT Pnec_1440 1241968 - 1243740 + | glutaminyl-tRNA synthetase Pnec_1441 1244608 - 1243721 - | NAD-dependent epimerase/dehydratase TERM 1068 1244777 - 1244761 - g 82 -7.9 -4.57569 | overlap 1244762 CTATGGCTGTAAAAA TGGAGCC TGC GGCTCCT GCAAAGGAAAAGTTG TERM 1069 1244776 - 1244762 - g 79 -11.4 -3.3422 | overlap 1244761 TATGGCTGTAAAAAT GGAGCC TGC GGCTCC TGCAAAGGAAAAGTT Pnec_1442 1244639 - 1245685 + | oxidoreductase FAD/NAD(P)-binding domain protein TERM 1070 1246444 - 1246455 + G 74 -5.8 -4.65895 | opp_overlap 1246434, overlap 1246434 AAGCAGGCTGCGGCC GGAC CGGA GTCC TTTTTGCCTACCAAA Pnec_1443 1245759 - 1246952 + | aminotransferase class-III Pnec_1444 1247692 - 1246979 - | ABC transporter related Pnec_1445 1248370 - 1247720 - | ABC transporter related TERM 1071 1248280 - 1248269 - G 79 -3 -5.27938 | ACCGTCAAATAAAAA GATT CCAG AATC AGCAGGGTACAAACC TERM 1072 1250513 - 1250544 + r 73 -10.2 -3.03619 | opp_overlap 1250518, overlap 1250518 ATTGAGTCTTGATAA AAAAATAGCACCGC AGTA GCGGCGCTATTTTC TATTAAGGAATCATT TERM 1073 1250539 - 1250518 - R 100 -12.3 -5.60993 | opp_overlap 1250513 1250518 GTCTTGATAAAAAAA TAGCACCGC AGTA GCGGCGCTA TTTTCTATTAAGGAA TERM 1074 1250518 - 1250539 + r 91 -10.1 -4.66537 | opp_overlap 1250518, overlap 1250513 GTCTTGATAAAAAAA TAGCACCGC AGTA GCGGCGCTA TTTTCTATTAAGGAA Pnec_1449 1252705 - 1251764 - | hydroxymethylbutenyl pyrophosphate reductase Pnec_1450 1253155 - 1252709 - | peptidylprolyl isomerase FKBP-type TERM 1075 1253511 - 1253489 - H 79 -9.1 -3.93256 | GAGATCCTCAAAGAA GCTCTAGCG AAAAA CGCTAGTGC GCTAATCGTGGCTCA Pnec_1451 1253519 - 1253698 + | DNA repair protein RadC Pnec_1452 1253843 - 1254076 + | ribosomal protein L28 Pnec_1453 1254088 - 1254255 + | ribosomal protein L33 TERM 1076 1254329 - 1254271 - T 100 -19.2 -3.44848 | opp_overlap 1254272 1254273 1254292, overlap 1254273 1254275 1254292 CGCTTTTATTAAATA CATACTTTAGGCAATAAAAAACCCGCTA CAT TGGCGGGTTTTTTATTGCCTAAAGCGCT TTGAACTTTTTTAGT TERM 1077 1254272 - 1254328 + T 100 -22.7 -3.8374 | opp_overlap 1254271 1254273 1254275 1254292, overlap 1254273 1254292 GCTTTTATTAAATAC ATACTTTAGGCAATAAAAAACCCGCTA CAT TGGCGGGTTTTTTATTGCCTAAAGCGC TTTGAACTTTTTTAG TERM 1078 1254327 - 1254273 - T 100 -24 -3.29704 | opp_overlap 1254272 1254273 1254292, overlap 1254271 1254275 1254292 CTTTTATTAAATACA TACTTTAGGCAATAAAAAACCCGCTA CAT TGGCGGGTTTTTTATTGCCTAAAGCG CTTTGAACTTTTTTA TERM 1079 1254273 - 1254327 + T 100 -26.2 -2.8916 | opp_overlap 1254273 1254271 1254275 1254292, overlap 1254272 1254292 CTTTTATTAAATACA TACTTTAGGCAATAAAAAACCCGCTA CAT TGGCGGGTTTTTTATTGCCTAAAGCG CTTTGAACTTTTTTA TERM 1080 1254325 - 1254275 - T 100 -28.8 -3.21269 | opp_overlap 1254273 1254272 1254292, overlap 1254273 1254271 1254292 TTTATTAAATACATA CTTTAGGCAATAAAAAACCCGCTA CAT TGGCGGGTTTTTTATTGCCTAAAG CGCTTTGAACTTTTT TERM 1081 1254292 - 1254308 + T 100 -10.1 -5.4833 | opp_overlap 1254292 1254275 1254273 1254271, overlap 1254273 1254272 TTAGGCAATAAAAAA CCCGCTA CAT TGGCGGG TTTTTTATTGCCTAA TERM 1082 1254308 - 1254292 - T 100 -7.9 -5.4833 | opp_overlap 1254273 1254272 1254292, overlap 1254275 1254273 1254271 TTAGGCAATAAAAAA CCCGCTA CAT TGGCGGG TTTTTTATTGCCTAA Pnec_1454 1255556 - 1254363 - | fatty acid desaturase TERM 1083 1255097 - 1255083 - G 83 -4.2 -5.33405 | opp_overlap 1255083, overlap 1255085 TGCACCAAATAAAAA CACATC AAT GATGAG TATGATGGTAACGCC TERM 1084 1255409 - 1255399 - G 72 -8.2 -3.66178 | overlap 1255400 GGGTGCAACTCTAAA GCGC GGT GCGC TTGGCAGCGGTGCAA Pnec_1455 1257144 - 1255585 - | Fmu (Sun) domain protein Pnec_1456 1257770 - 1257141 - | phosphoribosylglycinamide formyltransferase TERM 1085 1257651 - 1257641 - G 72 -8.2 -3.72073 | opp_overlap 1257637, overlap 1257638 1257637 AGCGAGCAAAATCAA GGCC CTT GGCC GCTGATTGATTCGCT TERM 1086 1260073 - 1260063 - g 85 -5.4 -5.28778 | AGTATGGATAAAAAA CCAT CCG ATGG CAAAGCGAGTTTGCG TERM 1087 1260199 - 1260220 + G 74 -5.8 -4.57482 | CTTTGTCACGTCAGC GCCAATGG GGCGTG CCAATGGC TTTCTTTGTACATAA TERM 1088 1260252 - 1260241 - g 74 -5.8 -4.62441 | TTGTACATAAAGAAA GTGG AGAG CCAC ATCCACGCACCGTTG Pnec_1458 1258752 - 1261613 + | isoleucyl-tRNA synthetase Pnec_1459 1261625 - 1262116 + | lipoprotein signal peptidase Pnec_1460 1262126 - 1263337 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase Pnec_1461 1263379 - 1263828 + | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 1089 1263883 - 1263868 - T 93 -10.4 -5.06414 | opp_overlap 1263868 TTGTTGGAATAAAAA GCCACC TCAG GGTGGC TTTTTTATTGGCTAG TERM 1090 1263868 - 1263883 + T 100 -10.4 -5.4833 | opp_overlap 1263868 TTGTTGGAATAAAAA GCCACC TCAG GGTGGC TTTTTTATTGGCTAG Pnec_1462 1264139 - 1263906 - | hypothetical protein Pnec_1463 1266488 - 1264182 - | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 1091 1264438 - 1264448 + g 90 -6.8 -5.31275 | opp_overlap 1264438 AAGGCAGCACTGAAA GTGG CAT CCAC TTTTTTCTCGTGCAA Pnec_1464 1266841 - 1266485 - | ATP-dependent Clp protease adaptor protein ClpS TERM 1092 1267274 - 1267256 - g 84 -8.2 -4.72729 | TAAGGAAAACCAAAA GGTAACGT TTG ACATTACC CAAGGCCCTAAAGGC Pnec_1465 1267116 - 1267319 + | cold-shock DNA-binding domain protein TERM 1093 1267362 - 1267344 - f 91 -10.3 -4.78107 | opp_overlap 1267344 GATCATTATTAAAAA CCCAGGA CTCGT TCCTGGG TTTTTTTTCGCCTGC TERM 1094 1267344 - 1267362 + F 100 -10.3 -5.78622 | opp_overlap 1267344 GATCATTATTAAAAA CCCAGGA CTCGT TCCTGGG TTTTTTTTCGCCTGC Pnec_1466 1267404 - 1267856 + | protein of unknown function DUF192 TERM 1095 1267880 - 1267897 + T 93 -11.3 -4.4078 | opp_overlap 1267880 CTCGGCAATAAAAAA CGCAGAC CTTG GTCTGCG TTTTGCTTAAAAAAA TERM 1096 1267897 - 1267880 - T 100 -11.3 -5.4505 | opp_overlap 1267880 CTCGGCAATAAAAAA CGCAGAC CTTG GTCTGCG TTTTGCTTAAAAAAA Pnec_1468 1269491 - 1268259 - | Argininosuccinate synthase Pnec_1469 1270549 - 1269569 - | ornithine carbamoyltransferase Pnec_1470 1270669 - 1270983 + | hypothetical protein TERM 1097 1271013 - 1270993 - T 100 -9.7 -5.61881 | opp_overlap 1270992 CCTTAAAAACAAAAA CCCGCTC TGATGAG GAGCGGG CTTAGGTCGAAACTA Pnec_1471 1271323 - 1271057 - | ribosomal protein S20 TERM 1098 1271288 - 1271305 + g 72 -9.1 -3.52475 | overlap 1271290 TTGTTTTACTGCTTG GCGTGCA CGCT TGCGCGC TTGTACTGTATTGGC TERM 1099 1272447 - 1272460 + G 71 -3.7 -4.85782 | overlap 1272432 TGCTGGCTGCACCTT GTGCG CTTG CGCTC TTTATTTTTGGGGAA Pnec_1472 1271468 - 1273021 + | integral membrane protein MviN Pnec_1473 1273027 - 1273683 + | hypothetical protein Pnec_1474 1274466 - 1273822 - | SNARE associated Golgi protein Pnec_1475 1274525 - 1275529 + | tRNA delta(2)-isopentenylpyrophosphate transferase Pnec_1476 1276610 - 1275546 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 1100 1277253 - 1277273 + G 74 -3.3 -5.0538 | TGCGCGGTATGTTGA TCGTCAT TTCCATC ATGGCGA TTTTTTACAGTGCAG TERM 1101 1277321 - 1277331 + G 76 -8.2 -4.08945 | opp_overlap 1277312, overlap 1277325 GTCAAAGGTGCAGCA GCGC TGG GCGC TTTTACAGCGCTCAT Pnec_1477 1276685 - 1277674 + | protein of unknown function UPF0118 TERM 1102 1277875 - 1277903 + G 86 -11 -3.72695 | gap 1 CGCTGGATTTACTGG TGGGGGC-CCCAG GGAT CTGGGCGCACCCA TTTACTAGAAGCAAT Pnec_1478 1277686 - 1278441 + | Chromosomal replication initiator DnaA Pnec_1479 1278460 - 1279140 + | HAD-superfamily subfamily IB hydrolase, TIGR01490 TERM 1103 1280033 - 1280018 - g 72 -9 -3.56568 | TAATGATTTTGTAAA GCTTGC CTTG GCAAGC ACTGACGAACGCATT TERM 1104 1280134 - 1280117 - g 82 -5.6 -5.1675 | TGATCTATTAAAAAA CTGGAA AGCCAA TTCCAG CAAAGGTATGGCTAA Pnec_1480 1279137 - 1280537 + | poly(A) polymerase TERM 1105 1281067 - 1281057 - f 77 -3.2 -5.23765 | opp_overlap 1281062 1281063, overlap 1281061 CAAAGAATAGAAAAA CTAC CCT GCAG GAACTGCAATTGTGG TERM 1106 1281889 - 1281850 - g 84 -8.6 -4.58283 | gap 1 TAAGTTTGTCAAAAA CTTTATGGACGGCCACCAC TCA GTAGAAGCCG-CCATTAAG GCTTATGTGCGTGAA Pnec_1482 1281134 - 1281952 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase Pnec_1483 1283102 - 1281981 - | chaperone protein DnaJ TERM 1107 1283155 - 1283133 - R 87 -13.5 -2.92513 | opp_overlap 1283133 1283136, overlap 1283122 1283136 ACAACCTCAATGACA CAAGTCGGC ACGAG GCCGACTTG TTATTTAAGTACATC TERM 1108 1283133 - 1283155 + r 100 -13.5 -3.9693 | opp_overlap 1283133 1283122 1283136, overlap 1283136 ACAACCTCAATGACA CAAGTCGGC ACGAG GCCGACTTG TTATTTAAGTACATC TERM 1109 1283152 - 1283136 - R 77 -9.4 -3.60214 | opp_overlap 1283133 1283136, overlap 1283133 1283122 ACCTCAATGACACAA GTCGGC ACGAG GCCGAC TTGTTATTTAAGTAC TERM 1110 1283136 - 1283152 + r 81 -9.4 -4.10744 | opp_overlap 1283136 1283133 1283122, overlap 1283133 ACCTCAATGACACAA GTCGGC ACGAG GCCGAC TTGTTATTTAAGTAC Pnec_1484 1285125 - 1283203 - | chaperone protein DnaK TERM 1111 1284044 - 1284056 + g 70 -4.9 -4.54343 | ACGTCTTTACGCGGT TCTTT TCC AAAGA TTTCTTTCACTTTGT TERM 1112 1285209 - 1285262 + r 100 -28.5 -4.85195 | opp_overlap 1285211 1285219 1285229, overlap 1285210 1285211 1285229 TAAAAAGAGGAATTC AAGGGGCAAACAGCAAAAAAGGCAG AAAT CTGCCTTTTTTGCTGTTTGCCCCAC TTTTTAGCTTATTTT TERM 1113 1285210 - 1285261 + r 100 -32 -3.48677 | opp_overlap 1285211 1285219 1285229, overlap 1285209 1285211 1285229 AAAAAGAGGAATTCA AGGGGCAAACAGCAAAAAAGGCAG AAAT CTGCCTTTTTTGCTGTTTGCCCCA CTTTTTAGCTTATTT TERM 1114 1285211 - 1285260 + r 100 -35.5 -2.67579 | opp_overlap 1285211 1285219 1285229, overlap 1285210 1285209 1285229 AAAAGAGGAATTCAA GGGGCAAACAGCAAAAAAGGCAG AAAT CTGCCTTTTTTGCTGTTTGCCCC ACTTTTTAGCTTATT TERM 1115 1285260 - 1285211 - R 100 -35.5 -3.25653 | opp_overlap 1285211 1285210 1285209 1285229, overlap 1285219 1285229 AAAAGAGGAATTCAA GGGGCAAACAGCAAAAAAGGCAG AAAT CTGCCTTTTTTGCTGTTTGCCCC ACTTTTTAGCTTATT TERM 1116 1285252 - 1285219 - R 100 -21.3 -3.61536 | opp_overlap 1285211 1285210 1285209 1285229, overlap 1285211 1285229 AATTCAAGGGGCAAA CAGCAAAAAAGGCAG AAAT CTGCCTTTTTTGCTG TTTGCCCCACTTTTT TERM 1117 1285242 - 1285229 - R 95 -8.1 -5.32699 | opp_overlap 1285211 1285210 1285209 1285229, overlap 1285219 1285211 GCAAACAGCAAAAAA GGCAG AAAT CTGCC TTTTTTGCTGTTTGC TERM 1118 1285229 - 1285242 + r 95 -8.1 -5.32699 | opp_overlap 1285229 1285219 1285211, overlap 1285211 1285210 1285209 GCAAACAGCAAAAAA GGCAG AAAT CTGCC TTTTTTGCTGTTTGC Pnec_1485 1285819 - 1285271 - | GrpE protein TERM 1119 1285743 - 1285778 + g 82 -6.9 -4.75472 | gap 1, overlap 1285736 TTTACAGCCGGAGTT TCT-GCCGTAGTTTCG ACGGC CGGATCTGCGGCAAGA TTTTCTTGCTCTGGG Pnec_1486 1286980 - 1285886 - | Ferrochelatase Pnec_1487 1288031 - 1287021 - | heat-inducible transcription repressor HrcA Pnec_1488 1288069 - 1288974 + | ATP-NAD/AcoX kinase TERM 1120 1288962 - 1288981 + F 79 -5 -5.15634 | overlap 1288963 CTGGAATGAGTATCC ATCGACAT TCTG ATGTCGAG TTTTTTGCTACGCTA TERM 1121 1288963 - 1288980 + F 72 -8.5 -3.68658 | overlap 1288962 TGGAATGAGTATCCA TCGACAT TCTG ATGTCGA GTTTTTTGCTACGCT Pnec_1489 1289001 - 1289654 + | DNA repair protein RecN Pnec_1490 1289858 - 1290661 + | DNA repair protein RecN TERM 1122 1290709 - 1290675 - T 100 -4.5 -5.87996 | gap 1, opp_overlap 1290677, overlap 1290678 GAAGCAACAAAAAAA TAA-GCACCTTTTAAT TAAT ATTAGAAGGCGCATTA AATACCTCCAACCAG TERM 1123 1290705 - 1290678 - T 87 -7.8 -4.96435 | opp_overlap 1290677, overlap 1290675 GCAACAAAAAAATAA GCACCTTTTAAT TAAT ATTAGAAGGCGC ATTAAATACCTCCAA Pnec_1491 1293498 - 1290685 - | (Glutamate--ammonia-ligase) adenylyltransferase Pnec_1492 1293578 - 1293465 - | hypothetical protein Pnec_1493 1293589 - 1297728 + | membrane protein-like protein TERM 1124 1298547 - 1298561 + F 71 -10 -2.71924 | overlap 1298546 TCTAAGTTACCTGCA CTTGCG CAT CGCAAG CTTTAAAGAAAGATC TERM 1125 1299925 - 1299902 - g 72 -8.8 -3.54741 | CAGTACCCCGTTAAA GGCGCCACCA TTAT TGGTAGCGGC CCAGAGTCTCTAAAG Pnec_1496 1298588 - 1300078 + | peptidase U62 modulator of DNA gyrase Pnec_1497 1300109 - 1301233 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1126 1301268 - 1301288 + T 93 -2.6 -5.89827 | opp_overlap 1301268 CCAGTAAATCTAAAA GAGACTAA TTTAT TTAATCTC TTTTTTTTCGTGCTT Pnec_1498 1301798 - 1301277 - | ATP--cobalamin adenosyltransferase TERM 1127 1303868 - 1303850 - g 79 -2.4 -5.49809 | CAAAGGCTAAAAAAA TCTCTGAC TTA ACCAAAGA TATTTCTGAGATTCT Pnec_1500 1303051 - 1304280 + | protein of unknown function DUF224 cysteine-rich region domain protein Pnec_1502 1305001 - 1305870 + | pyrroline-5-carboxylate reductase Pnec_1503 1306748 - 1305885 - | 4-hydroxybenzoate polyprenyl transferase TERM 1128 1305952 - 1305927 - G 85 -6.2 -5.1356 | gap 1, opp_overlap 1305926 TCCCAGGAATAAAAA TCCGCC-CAAC CAGTT ATTGTGGCGGA ATGCCTTAAAGCAAT Pnec_1504 1308846 - 1306759 - | ATP-dependent DNA helicase RecG TERM 1129 1308239 - 1308271 + g 86 -12.9 -3.43151 | TCTAATAATGACTGG GTATTTGCATCGGCT GGC GGTTGATGCAAATAC TTAATTGCTGATTGC Pnec_1505 1308876 - 1309922 + | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 1130 1310765 - 1310780 + G 78 -6 -4.86773 | ATGCCAACTCGCAAT GCCCGC AATG GCTGGC TTTTTACTCGTTTTG Pnec_1506 1309919 - 1311076 + | queuine tRNA-ribosyltransferase Pnec_1507 1311211 - 1311537 + | preprotein translocase, YajC subunit TERM 1131 1312592 - 1312621 + G 72 -9.3 -3.49951 | opp_overlap 1312594, overlap 1312593 CCGCATTACCGATGC AAGCGCTGGTTTT GATC AAAACCAGCGCCC TTCTGTAAACATCTC TERM 1132 1312593 - 1312620 + G 78 -12.8 -2.69649 | opp_overlap 1312594, overlap 1312592 CGCATTACCGATGCA AGCGCTGGTTTT GATC AAAACCAGCGCC CTTCTGTAAACATCT TERM 1133 1312619 - 1312594 - g 93 -16.3 -3.08464 | opp_overlap 1312593 1312592 GCATTACCGATGCAA GCGCTGGTTTT GATC AAAACCAGCGC CCTTCTGTAAACATC Pnec_1508 1311576 - 1313435 + | protein-export membrane protein SecD Pnec_1509 1313439 - 1314413 + | protein-export membrane protein SecF Pnec_1510 1315799 - 1314438 - | Three-deoxy-D-manno-octulosonic-acid transferase domain protein TERM 1134 1315717 - 1315707 - G 77 -6.8 -4.40298 | AGCTAAACGAATAAA TGCC AAT GGCA ACAAGAGATGCCACA TERM 1135 1315781 - 1315752 - G 71 -7.1 -4.04579 | gap 1, opp_overlap 1315757 1315759, overlap 1315753 1315757 TTGATAAACAGCAAA CCAGA-CCCGGGGC TTC GCCCCGTATTCTGA ATTGGTAGTTAAGCT TERM 1136 1315759 - 1315773 + g 81 -12.8 -3.28814 | opp_overlap 1315757 1315753 1315752, overlap 1315757 ACAGCAAACCAGACC CGGGGC TTC GCCCCG TATTCTGAATTGGTA Pnec_1511 1317247 - 1315796 - | adenylosuccinate lyase TERM 1137 1315998 - 1315980 - G 70 -9.6 -3.04461 | TAGGGATTCTCAATA CCGTAACG ACG CATTACGG TCTGCACTGGCTCAG TERM 1138 1316992 - 1316979 - G 79 -2.3 -5.62045 | opp_overlap 1316979 AGAGATAACAAAAAA GCTTC ATCA GTAGC ATTAATTTTTGGCAC Pnec_1512 1317253 - 1317885 + | Glutathione S-transferase domain Pnec_1513 1319073 - 1317961 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1139 1318456 - 1318470 + g 82 -2.8 -5.4756 | opp_overlap 1318458, overlap 1318444 1318443 1318458 CTCGCCAATAAAACA AATTCC AGT GGAATC TTTTTTCTTGGCATT TERM 1140 1318468 - 1318458 - G 78 -5.4 -4.87892 | opp_overlap 1318456 1318444 1318443 1318458 CGCCAATAAAACAAA TTCC AGT GGAA TCTTTTTTCTTGGCA TERM 1141 1319212 - 1319175 - H 70 -10.1 -2.59564 | opp_overlap 1319174 1319171 1319187, overlap 1319174 1319187 GCTTTACGTTATAAG GGTATGTATATATACGC AATT GCGTATATATACATAAA ATGGATTTTTTGAAA Pnec_1514 1319250 - 1320380 + | alanine dehydrogenase/PNT domain protein TERM 1142 1320721 - 1320711 - g 86 -4.6 -5.45652 | ATGTTCAAGAAAAAA GCCC CTA AGGC TGATGCGGCTGGAAC Pnec_1515 1320405 - 1320743 + | putative transmembrane NAD(P) transhydrogenase transmembrane protein Pnec_1516 1320777 - 1322144 + | NAD(P)(+) transhydrogenase (AB-specific) TERM 1143 1322163 - 1322190 + T 100 -13.6 -3.61654 | opp_overlap 1322163 1322168 1322170, overlap 1322170 GCTCAAGCCATCAAA TAAAAGACCGCC TTAG GGCGGTTTTTTA TTTCCCCTAAGTCTG TERM 1144 1322190 - 1322163 - T 91 -11.4 -3.794 | opp_overlap 1322163 1322170, overlap 1322168 1322170 GCTCAAGCCATCAAA TAAAAGACCGCC TTAG GGCGGTTTTTTA TTTCCCCTAAGTCTG TERM 1145 1322185 - 1322168 - T 82 -6.9 -4.9448 | opp_overlap 1322163 1322170, overlap 1322163 1322170 AGCCATCAAATAAAA GACCGCC TTAG GGCGGTT TTTTATTTCCCCTAA TERM 1146 1322183 - 1322170 - T 81 -9.5 -4.08958 | opp_overlap 1322170 1322163, overlap 1322168 1322163 CCATCAAATAAAAGA CCGCC TTAG GGCGG TTTTTTATTTCCCCT TERM 1147 1322170 - 1322183 + T 100 -9.5 -5.64421 | opp_overlap 1322168 1322163 1322170, overlap 1322163 CCATCAAATAAAAGA CCGCC TTAG GGCGG TTTTTTATTTCCCCT Pnec_1517 1322912 - 1322301 - | hypothetical protein TERM 1148 1322958 - 1322936 - R 100 -11.3 -5.33405 | opp_overlap 1322936 TGTACCAAATAAAAA CGCCTGGTC TTTTG AACCAGGCG TTTTTATTCCTACAA TERM 1149 1322936 - 1322958 + r 100 -10.6 -5.1356 | opp_overlap 1322936 TGTACCAAATAAAAA CGCCTGGT CTTTTGA ACCAGGCG TTTTTATTCCTACAA Pnec_1518 1324641 - 1322998 - | chaperonin GroEL TERM 1150 1323110 - 1323147 + g 71 -10.7 -2.62371 | opp_overlap 1323114 1323119, overlap 1323109 1323114 1323119 GTCAACAAGAGGCCA GCAACTGAAGCCGCATT TACC AATGCAGCTTTAGTTAC CTTGGTTGGGTCGAT TERM 1151 1323143 - 1323114 - G 71 -10.1 -3.19003 | opp_overlap 1323110 1323109 1323114 1323119, overlap 1323119 ACAAGAGGCCAGCAA CTGAAGCCGCATT TACC AATGCAGCTTTAG TTACCTTGGTTGGGT TERM 1152 1323114 - 1323143 + g 71 -10.1 -3.24166 | opp_overlap 1323114 1323119, overlap 1323110 1323109 1323119 ACAAGAGGCCAGCAA CTGAAGCCGCATT TACC AATGCAGCTTTAG TTACCTTGGTTGGGT TERM 1153 1323428 - 1323462 + g 76 -4.3 -4.98352 | gap 2, opp_overlap 1323449, overlap 1323449 CCCTCCTCCACAGCT GCACGCGTTG-C-ATGC AAT GCATCGTCAACACGAGC TTTCTTTTCTTTCAT TERM 1154 1323636 - 1323655 + g 91 -8.6 -4.9138 | CTTTAGCATCGCCAG CACCGTCA ATGA TGATGGTG TTTTCTTTGCCTACT Pnec_1519 1324960 - 1324670 - | chaperonin Cpn10 TERM 1155 1324870 - 1324899 + g 78 -4.9 -5.00339 | overlap 1324872 CAGGCTTTTCTGCAG CAGCGTCAGGAAT AATG ATTCCAGAAGCAG TTTTTGATTCTTGAT Pnec_1520 1325278 - 1325844 + | putative diguanylate phosphodiesterase TERM 1156 1326038 - 1326063 + G 72 -3.2 -5.08824 | opp_overlap 1326037 TCAAATGCTTCAAAT TGGCGATAGC CGTATC GCTAAAGCCA TTTTTTCGCTGCACC Pnec_1521 1325841 - 1326113 + | putative diguanylate phosphodiesterase Pnec_1522 1326113 - 1326520 + | response regulator receiver protein Pnec_1524 1328425 - 1329300 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 1157 1330118 - 1330088 - T 70 -10 -2.57132 | opp_overlap 1330087, overlap 1330087 1330090 CCCCGGCCTTAGAAG TATCGATTTATC ACCTGAA GATAAATCGATA ATGGTTGACTCAATA Pnec_1527 1331868 - 1330684 - | phosphoribosylaminoimidazole carboxylase, ATPase subunit TERM 1158 1330713 - 1330723 + g 71 -6.8 -4.09739 | opp_overlap 1330706, overlap 1330722 CTAATTCAGTAGCTA CTGC TGC GCAG TTTTGGCGAGCTTCA Pnec_1528 1332367 - 1331873 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit Pnec_1529 1333305 - 1332409 - | phosphoribosylaminoimidazole-succinocarboxamide synthase Pnec_1530 1334377 - 1333313 - | fructose-bisphosphate aldolase, class II, Calvin cycle subtype Pnec_1531 1335874 - 1334438 - | pyruvate kinase Pnec_1532 1337088 - 1335877 - | Phosphoglycerate kinase Pnec_1533 1337287 - 1338210 + | branched-chain amino acid aminotransferase Pnec_1534 1338232 - 1338420 + | hypothetical protein TERM 1159 1339391 - 1339376 - g 71 -7.6 -3.89346 | opp_overlap 1339376 CCCCTATCCGACAAA GCCAAA GTCA TTTGGC TCAATTTACCATGCA Pnec_1535 1338467 - 1339507 + | lipopolysaccharide heptosyltransferase II Pnec_1536 1339525 - 1339959 + | hypothetical protein TERM 1160 1340321 - 1340302 - T 70 -5.8 -4.30978 | CTTAAGTGATGAAAA CGACAATA TTTA TATTATCG GAAAAGTAAACCAAA Pnec_1538 1342266 - 1340569 - | peptidase M48 Ste24p TERM 1161 1341175 - 1341148 - G 72 -4.9 -4.61566 | gap 1, opp_overlap 1341148 CGTCAAACCATAAAA GCCCTCCAATTG TTTTC CAATTTG-GGGC TGCTTACTCAAACTA TERM 1162 1343124 - 1343109 - R 91 -2.4 -5.7946 | opp_overlap 1343109 GTGGCAATAAAAAAA CCGCCC CGAA GAGTGG TATTTAATACATGCT Pnec_1540 1343607 - 1343149 - | hypothetical protein Pnec_1541 1343828 - 1343604 - | hypothetical protein Pnec_1542 1344688 - 1344119 - | hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein TERM 1163 1344272 - 1344244 - G 93 -11.9 -3.82261 | overlap 1344240 CGCCAATAAAACTAA GCGATCTTACT TGCGAAG AGTAAGATCGC GCATACATACTCGCT TERM 1164 1344700 - 1344729 + r 85 -9.3 -4.36366 | opp_overlap 1344701 1344705, overlap 1344705 TCATACTTCTACTAT ACAAATAGCCGCC TGCT GGCGGCTATTTAA TTTATCTATTTTGTA TERM 1165 1344728 - 1344701 - R 89 -15 -2.79501 | opp_overlap 1344700 1344705, overlap 1344705 CATACTTCTACTATA CAAATAGCCGCC TGCT GGCGGCTATTTA ATTTATCTATTTTGT TERM 1166 1344705 - 1344724 + r 100 -13.6 -4.20552 | opp_overlap 1344701 1344705, overlap 1344700 CTTCTACTATACAAA TAGCCGCC TGCT GGCGGCTA TTTAATTTATCTATT TERM 1167 1344724 - 1344705 - R 100 -13.6 -4.08706 | opp_overlap 1344705 1344700, overlap 1344701 CTTCTACTATACAAA TAGCCGCC TGCT GGCGGCTA TTTAATTTATCTATT Pnec_1544 1345340 - 1345236 - | hypothetical protein TERM 1168 1345308 - 1345326 + g 95 -11.7 -4.14541 | opp_overlap 1345308 GCGGTCAATAAAAAA GCCGGCT TTAGC AGCCGGC TTTCTCTGATTCATC TERM 1169 1345326 - 1345308 - G 100 -11.7 -5.4505 | opp_overlap 1345308 GCGGTCAATAAAAAA GCCGGCT TTAGC AGCCGGC TTTCTCTGATTCATC Pnec_1545 1346056 - 1345352 - | Integral membrane protein TerC TERM 1170 1345733 - 1345743 + g 82 -6.8 -4.89009 | AGTGCGGATAGCAGC CCAG ATA CTGG TTTTTGCTTCCATGT TERM 1171 1346112 - 1346133 + r 70 -6.5 -4.28994 | opp_overlap 1346112 TGATACTACAAAAAA GGATGCTGT TTTA GCAGCACCC TTTTCCTAAATACTA TERM 1172 1346133 - 1346112 - R 95 -8 -5.34555 | opp_overlap 1346112 TGATACTACAAAAAA GGATGCTG TTTTAG CAGCACCC TTTTCCTAAATACTA Pnec_1546 1347043 - 1346150 - | succinyl-CoA synthetase, alpha subunit TERM 1173 1346778 - 1346763 - G 80 -5.4 -5.06472 | overlap 1346765 ATACAAATAACAAAA TCGAGG TCAG CCTCAA CAGCTTCCCAAATCG Pnec_1547 1348228 - 1347059 - | succinyl-CoA synthetase, beta subunit TERM 1174 1348189 - 1348207 + g 71 -9.6 -3.23395 | opp_overlap 1348188 CAGGCACATTAAATT GGCGAAGA AGT TCTTTGCC TTGGTACTCATGAAT Pnec_1548 1348936 - 1348418 - | regulatory protein RecX TERM 1175 1348896 - 1348873 - G 70 -5.2 -4.42386 | opp_overlap 1348877 1348881, overlap 1348843 1348842 1348881 CCCTCAGGGATAAAA GGCGCAAAGC CCGA GCTTTGAGAC TCGGGCTTTGTTTGG TERM 1176 1348877 - 1348906 + g 100 -15.9 -3.8297 | gap 1, opp_overlap 1348843 1348842 1348873 1348881, overlap 1348881 CAGGGATAAAAGGCG CAAAGCCCGAG-CT TTG AGACTCGGGCTTTG TTTGGGCTTTTTATT TERM 1177 1348902 - 1348881 - G 86 -10.9 -3.67737 | gap 1, opp_overlap 1348877 1348881, overlap 1348842 1348873 GATAAAAGGCGCAAA GCCCGAG-CT TTG AGACTCGGGC TTTGTTTGGGCTTTT TERM 1178 1348881 - 1348902 + g 95 -10.9 -4.48743 | gap 1, opp_overlap 1348842 1348873 1348881, overlap 1348877 GATAAAAGGCGCAAA GCCCGAG-CT TTG AGACTCGGGC TTTGTTTGGGCTTTT Pnec_1549 1350029 - 1348941 - | recA protein TERM 1179 1349945 - 1349960 + g 72 -3.2 -4.96646 | overlap 1349943 TCTCAATTTGTGCCA GCGCTG CTGT TAGTGC TTTTTGCTTGTCTCC Pnec_1550 1350298 - 1350149 - | hypothetical protein TERM 1180 1350473 - 1350496 + r 100 -12.4 -3.87149 | opp_overlap 1350473 GCACCCTAAGAAAAA GGCCACTGCC GAAG GGCAATGGCC TTTAGATTTGGTGGC TERM 1181 1350496 - 1350473 - R 100 -14.6 -5.08601 | opp_overlap 1350473 GCACCCTAAGAAAAA GGCCACTGCC GAAG GGCAATGGCC TTTAGATTTGGTGGC Pnec_1551 1351066 - 1350818 - | hypothetical protein TERM 1182 1351619 - 1351652 + r 93 -9.7 -5.02074 | opp_overlap 1351626 AAAGATTTGTGGGAA TAAAAAACCCGACCA TTTC TGATCGGGTTTCTTA TTTTTTACAGACTAA TERM 1183 1351645 - 1351626 - R 100 -10 -5.4505 | opp_overlap 1351619 TGTGGGAATAAAAAA CCCGACCA TTTC TGATCGGG TTTCTTATTTTTTAC TERM 1184 1352179 - 1352146 - R 71 -8.9 -3.27771 | overlap 1352144 TTTACAACAGCAAGA CCACCTACAGGACCA GGAA TGGTGCTGTAGCTAG CAGAGTTAGACGCCA Pnec_1555 1355766 - 1355137 - | protein of unknown function UPF0126 TERM 1185 1355381 - 1355366 - G 74 -6.8 -4.22375 | overlap 1355367 1355369 1355376 1355377 ACATCACGCAATAAA CCACCA CCAA TGGCGG TAACCACCCCCAATA Pnec_1556 1356532 - 1356011 - | transferase hexapeptide repeat containing protein Pnec_1557 1356741 - 1356586 - | Rh-like protein/ammonium transporter TERM 1186 1357782 - 1357792 + H 71 -4 -4.77216 | opp_overlap 1357782 TACCTGTTTTCAAAG TTTC CAT GAAA TTTTTCCCTCTTATT TERM 1187 1357857 - 1357845 - H 74 -7.7 -4.01315 | opp_overlap 1357844 1357853 AAAAAGCCCAAAGAA GTGCA GAT TGCAC CTAATTAGTGCATTA TERM 1188 1358239 - 1358227 - H 71 -9.1 -3.30338 | opp_overlap 1358226 1358224 1358223 ATAAGCTGCGGATAA GCCTG CTG CAGGC GTAGTTTTAGGATAC Pnec_1559 1358389 - 1358640 + | hypothetical protein TERM 1189 1358692 - 1358665 - T 81 -9.9 -3.95073 | opp_overlap 1358665 GCCCAGATTTACAAA CCCAGCTCGTA TTAATT TACCAGCTGGG TTTTTTATTTGGATT TERM 1190 1358665 - 1358692 + T 100 -9.9 -5.67283 | opp_overlap 1358665 GCCCAGATTTACAAA CCCAGCTCGTA TTAATT TACCAGCTGGG TTTTTTATTTGGATT Pnec_1560 1359067 - 1358801 - | OsmC family protein Pnec_1561 1359526 - 1359116 - | Rhodanese domain protein Pnec_1562 1359585 - 1360847 + | protein of unknown function DUF1504 Pnec_1563 1360913 - 1362259 + | tRNA-i(6)A37 thiotransferase enzyme MiaB Pnec_1564 1362249 - 1362722 + | protein of unknown function UPF0054 TERM 1191 1362892 - 1362912 + G 72 -4.7 -4.66833 | TGATCGATGCAGATG CGCTTTCAA TGA TTGAGGGTG TTTTTCAAGTTGGGC Pnec_1565 1362753 - 1363607 + | transporter-associated region Pnec_1566 1363630 - 1365132 + | apolipoprotein N-acyltransferase TERM 1192 1366050 - 1366038 - g 80 -5.5 -4.9792 | opp_overlap 1366038, overlap 1366039 GAGTCTAGAGAAAAA CTGGG CTT CCCAA TGTGTCAACGTCCAG Pnec_1567 1365192 - 1366082 + | glycyl-tRNA synthetase, alpha subunit TERM 1193 1366554 - 1366536 - g 73 -9.6 -3.4582 | overlap 1366534 GCACTTGAGCAAACA GCCCAAGT TGC ACTTGAGC AAACTTTAAATAAGT TERM 1194 1367728 - 1367718 - g 75 -3.2 -5.20333 | GATGTACAAGAAAAA GCTA AGG CAGC AGATATCTATGCTTT Pnec_1568 1366110 - 1368248 + | glycyl-tRNA synthetase, beta subunit Pnec_1569 1368245 - 1368817 + | histidinol-phosphate phosphatase family protein TERM 1195 1368991 - 1368981 - g 74 -6.8 -4.25283 | opp_overlap 1368980, overlap 1368959 ATTGCTTTATTAAAA CCAC TCT GTGG CATTCATTACGAAAT Pnec_1570 1368825 - 1369559 + | phospholipid/glycerol acyltransferase Pnec_1571 1370368 - 1369574 - | dimethyladenosine transferase Pnec_1573 1372791 - 1371343 - | SurA domain Pnec_1574 1375316 - 1372791 - | Organic solvent tolerance protein Pnec_1575 1375350 - 1376351 + | aminoglycoside phosphotransferase Pnec_1576 1376365 - 1377081 + | Nucleotidyl transferase TERM 1196 1377211 - 1377222 + G 73 -4.4 -4.84527 | overlap 1377206 1377204 CGAATTTCCATATCG TCAC GATA GTGA TTTTTACTATCTAAC Pnec_1577 1377074 - 1378441 + | peptidase M24 Pnec_1578 1378456 - 1379613 + | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Pnec_1579 1379743 - 1380759 + | TIM-barrel protein, nifR3 family Pnec_1580 1380809 - 1381048 + | transcriptional regulator, Fis family Pnec_1581 1381096 - 1382676 + | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1197 1382851 - 1382861 + G 71 -6.8 -4.12198 | AGCGCTTTACGCTGG CCTC AAA GAGG TTTTAGAGACTTATC TERM 1198 1383017 - 1382987 - g 72 -4.7 -4.56597 | gap 1 CTTGTTTCCGAAAAA CTCCCAGTA-GCCG AGTA CAGCGCACTGCGAG TCAAGCAAGCCATAG Pnec_1582 1382708 - 1383214 + | crossover junction endodeoxyribonuclease RuvC Pnec_1583 1383244 - 1383825 + | Holliday junction DNA helicase RuvA Pnec_1584 1383868 - 1384938 + | Holliday junction DNA helicase RuvB Pnec_1585 1386167 - 1384935 - | tyrosyl-tRNA synthetase TERM 1199 1387308 - 1387287 - g 100 -13.7 -5.38054 | GCTCATAAAGAAAAA CGGCCGGCA AATT TGCCAGCCG TTACAGGCGCAAAGG Pnec_1586 1386231 - 1387358 + | protein of unknown function UPF0075 Pnec_1587 1387745 - 1387359 - | iron-sulfur cluster assembly accessory protein Pnec_1588 1388905 - 1387823 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 1200 1388955 - 1388972 + r 72 -8.3 -3.65827 | opp_overlap 1388955 TTGTAGAAACAAAAA GGGCCGC TTGC GCGACCC TTTCGATAAAACTTG TERM 1201 1388972 - 1388955 - R 100 -10.5 -5.38054 | opp_overlap 1388955 TTGTAGAAACAAAAA GGGCCGC TTGC GCGACCC TTTCGATAAAACTTG Pnec_1589 1389403 - 1389002 - | ribosomal protein S9 Pnec_1590 1389841 - 1389413 - | ribosomal protein L13 TERM 1202 1390031 - 1390013 - H 100 -10.3 -6.15259 | opp_overlap 1390028 TAACCTAAAAAAAAA CCCAGGA ACGAG TCCTGGG CTGGAATCCACCTAT Pnec_1591 1390266 - 1390658 + | OsmC family protein Pnec_1592 1392084 - 1391053 - | dihydroorotase, homodimeric type TERM 1203 1391148 - 1391159 + g 75 -3 -5.1615 | TACTTTGCGCCTGTC TTAC CAAA GTAA TTTTTTCACTATTGC TERM 1204 1391476 - 1391466 - G 80 -6.8 -4.72272 | opp_overlap 1391466 CGCCGCCAGCAAAAA TCGC ATT GCGA TTCATCAGCAAATGC TERM 1205 1392254 - 1392270 + r 72 -8.7 -3.64822 | TCAAACCAGAATTGG CACTCGT TTG ACGGGTG TTTGAATCAAACCAT Pnec_1595 1395289 - 1393466 - | ABC transporter related TERM 1206 1394834 - 1394824 - G 72 -5.4 -4.47456 | overlap 1394825 1394827 AGAGGGAATAAGAAA TCAG CGG CTGA ATGCCACGTGTGCCG TERM 1207 1395229 - 1395243 + g 82 -7.8 -4.7173 | GAATAACGCGCCAGT CACCTC TTT GGGGTG TTTTTGAATCTACTC Pnec_1596 1395770 - 1395327 - | NUDIX hydrolase Pnec_1597 1397596 - 1395794 - | aspartyl-tRNA synthetase TERM 1208 1397493 - 1397516 + g 71 -8 -3.91897 | opp_overlap 1397489 1397491 1397494, overlap 1397494 AAGTCAATAAAGATC ACGCCTCCGT GGTC ACGGCGGCGG TTTATCCATCCAGCG TERM 1209 1397494 - 1397515 + g 75 -11.5 -2.94924 | opp_overlap 1397489 1397491 1397494, overlap 1397493 AGTCAATAAAGATCA CGCCTCCGT GGTC ACGGCGGCG GTTTATCCATCCAGC TERM 1210 1397515 - 1397494 - G 75 -11.5 -2.94962 | opp_overlap 1397494 1397493, overlap 1397489 1397491 AGTCAATAAAGATCA CGCCTCCGT GGTC ACGGCGGCG GTTTATCCATCCAGC Pnec_1598 1398266 - 1397613 - | protein of unknown function DUF502 Pnec_1599 1399906 - 1398320 - | 2-polyprenylphenol 6-hydroxylase TERM 1211 1398384 - 1398362 - G 80 -6.9 -4.57341 | overlap 1398381 AATTCCTGCCAAAAA GCCCCCTGC AAAGA GCAAGGCGC CTAGTAACAGGCGGT TERM 1212 1398657 - 1398675 + g 74 -3.8 -5.00616 | AGTTGACGAGCCAGT CCCTCT ATATTCA GGAGGG TTTTTTGCAACAAGG Pnec_1600 1400530 - 1399910 - | protein of unknown function DUF1243 TERM 1213 1400087 - 1400099 + g 76 -4.7 -4.8066 | AGCGGCAGACCGCGT GGCAG ACA CCGCC TTTTTACCTTGTCTT TERM 1214 1400558 - 1400543 - R 93 -10.4 -5.11033 | opp_overlap 1400543 CATAAGTGTAAAAAA CCCGCA CAAG TGCGGG TTTTCCGACGGGCAA TERM 1215 1400543 - 1400558 + r 82 -10.4 -4.07568 | opp_overlap 1400543 CATAAGTGTAAAAAA CCCGCA CAAG TGCGGG TTTTCCGACGGGCAA Pnec_1601 1401496 - 1400585 - | import inner membrane translocase subunit Tim44 Pnec_1602 1402308 - 1401565 - | ubiquinone/menaquinone biosynthesis methyltransferase Pnec_1603 1402706 - 1402308 - | protein of unknown function DUF971 Pnec_1604 1406545 - 1402706 - | FAD linked oxidase domain protein TERM 1216 1403507 - 1403495 - G 83 -6.3 -5.08255 | opp_overlap 1403497 1403497, overlap 1403497 ACCCGGAAAATAAAA TACTG CTT CAGTA TCTGCAGAAGTAGTC TERM 1217 1405623 - 1405642 + g 74 -3.5 -5.00616 | opp_overlap 1405623 GCGAGATTGTCTAAA GCAGTTC CCCAAA GAACCGC TTTTTTACCGCCAGC TERM 1218 1406929 - 1406913 - g 70 -10.1 -3.05384 | opp_overlap 1406912, overlap 1406885 1406884 GGCCTCCGCAGGTAA CCACGCC CAG GGCGTAG CATTATCAGCCTCCA Pnec_1605 1406680 - 1408200 + | threonine dehydratase, biosynthetic Pnec_1606 1408214 - 1409122 + | 5'-nucleotidase TERM 1219 1410010 - 1410035 + T 100 -11.9 -4.87626 | opp_overlap 1410010 ACGATCAAATAAAAA CCCCTTGTAGG AAAT CCTAGAAGGGG TTTTTGCTGTTGCGG TERM 1220 1410035 - 1410010 - T 100 -11.9 -5.34309 | opp_overlap 1410010 ACGATCAAATAAAAA CCCCTTGTAGG AAAT CCTAGAAGGGG TTTTTGCTGTTGCGG Pnec_1608 1410530 - 1410075 - | single-strand binding protein TERM 1221 1410352 - 1410382 + g 74 -5.4 -4.62772 | opp_overlap 1410357 ATTTCTGCAAGCTTA CCAAAGAATGCAAC ACG GTGCCATTCTGTGG TTTCTTTCATTTCGC Pnec_1609 1411796 - 1410612 - | major facilitator superfamily MFS_1 TERM 1222 1411218 - 1411200 - G 76 -4.6 -5.00616 | opp_overlap 1411202, overlap 1411202 TTCTGGGCGAAAAAA TACTTCTT TCA AAGAAGTC TGCTGAACTTTAGTT TERM 1223 1411216 - 1411202 - G 71 -7.2 -4.13561 | opp_overlap 1411202, overlap 1411200 CTGGGCGAAAAAATA CTTCTT TCA AAGAAG TCTGCTGAACTTTAG Pnec_1610 1411834 - 1414731 + | excinuclease ABC, A subunit TERM 1224 1414761 - 1414737 - T 89 -10 -4.45077 | overlap 1414732 1414738 1414746 GAAAAAGTAGCAAAA GGCCAGCAAC CCTTC GTTGCTGGCG ACAGGGTCTCAGAGT TERM 1225 1414760 - 1414738 - T 93 -13.5 -3.25419 | overlap 1414732 1414737 1414746 AAAAAGTAGCAAAAG GCCAGCAAC CCTTC GTTGCTGGC GACAGGGTCTCAGAG Pnec_1611 1416752 - 1414770 - | sodium/hydrogen exchanger Pnec_1612 1416764 - 1417756 + | KpsF/GutQ family protein Pnec_1613 1417781 - 1418356 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Pnec_1614 1418360 - 1419001 + | protein of unknown function DUF1239 Pnec_1615 1419001 - 1419573 + | OstA family protein Pnec_1616 1419570 - 1420337 + | ABC transporter related TERM 1226 1420341 - 1420354 + F 72 -6.7 -4.21194 | opp_overlap 1420325, overlap 1420335 TTCCGGATGTAAGCC GCAAG GCTT CTTGC TTTTAAATAATAAAA Pnec_1617 1420527 - 1420850 + | sigma 54 modulation protein/ribosomal protein S30EA Pnec_1618 1420884 - 1421345 + | putative PTS IIA-like nitrogen-regulatory protein PtsN Pnec_1619 1421342 - 1422328 + | HPr kinase TERM 1227 1422820 - 1422805 - gT 71 -9 -3.35224 | opp_overlap 1422803 1422797, overlap 1422803 AGACCTTCTCAAAGA CAAGCC CATA GGCTTG ACTGTAGTCTTTGAG Pnec_1621 1424312 - 1423167 - | A/G-specific adenine glycosylase Pnec_1620 1422332 - 1423222 + | hypothetical protein TERM 1228 1423991 - 1423979 - GT 70 -4.7 -4.41047 | ATTGCTCAAGCAAAA CCGGG TCA CTCGG AAACTTGCCACCAAA Pnec_1622 1425133 - 1424297 - | formamidopyrimidine-DNA glycosylase TERM 1229 1424465 - 1424485 + g 73 -2.5 -5.1287 | opp_overlap 1424465 AAAATCTTTCAATGA GCTACCG CCTGCTT CGATAGC TTTTTTCAGTATCGA TERM 1230 1425901 - 1425917 + G 81 -5.2 -5.10933 | opp_overlap 1425901, overlap 1425906 AGCAAAGCACATCAA CTATCT CCAAA AGATAG TTTTATTTTGGATAG TERM 1231 1425983 - 1425966 - g 74 -5.6 -4.56597 | overlap 1425968 TCGTCTTGGGAAAAA TGCTCT CGCTTT AGAGCA ACTACAGCAAGCGTT TERM 1232 1426113 - 1426101 - g 72 -6.3 -4.21936 | GCGACAAGGCCAAAA GTTAG ATG CTAAC AATCCAACACTTAAA Pnec_1623 1425169 - 1426656 + | outer membrane lipoprotein LolB Pnec_1624 1426668 - 1427558 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 1233 1427787 - 1427775 - g 74 -5.5 -4.62203 | overlap 1427776 GCCAAAGAACTAAAA CTCCC AAT GGGAA AAGCCTTTGTAGGCC Pnec_1625 1427688 - 1428653 + | ribose-phosphate pyrophosphokinase Pnec_1626 1428790 - 1429434 + | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 1234 1429475 - 1429452 - f 80 -11 -3.29461 | opp_overlap 1429452, overlap 1429456 CAATCGCTTGTACAA GAAAGCCCGC GCAA GCGGGTTTTC TTTTTTCCTTTTGTA TERM 1235 1429452 - 1429475 + F 100 -13.2 -5.50313 | opp_overlap 1429452 1429456 CAATCGCTTGTACAA GAAAGCCCGC GCAA GCGGGTTTTC TTTTTTCCTTTTGTA TERM 1236 1429471 - 1429456 - f 73 -6 -4.30719 | opp_overlap 1429452, overlap 1429452 CGCTTGTACAAGAAA GCCCGC GCAA GCGGGT TTTCTTTTTTCCTTT Pnec_1627 1429522 - 1430112 + | Aminoacyl-tRNA hydrolase Pnec_1628 1430375 - 1430109 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 1237 1430398 - 1430420 + r 77 -2 -5.40072 | CCGTCAATTTCACTC TTTATTCTGA GAG TCAGAAGCAA TTTTTTTGACAAGCC Pnec_1629 1430889 - 1430392 - | pantetheine-phosphate adenylyltransferase Pnec_1630 1431522 - 1430926 - | methyltransferase Pnec_1631 1432882 - 1431545 - | peptidase M16 domain protein Pnec_1632 1434246 - 1432882 - | peptidase M16 domain protein TERM 1238 1434353 - 1434372 + G 76 -9.4 -3.81951 | opp_overlap 1434353 1434349 CCCTTTTCAAATCAA CCAAGATT GATC AATCTTGG TTTGATACTCTGGAA TERM 1239 1434372 - 1434353 - g 72 -9.4 -3.51232 | opp_overlap 1434353, overlap 1434349 CCCTTTTCAAATCAA CCAAGATT GATC AATCTTGG TTTGATACTCTGGAA Pnec_1633 1434310 - 1435200 + | signal recognition particle-docking protein FtsY Pnec_1634 1435294 - 1436217 + | RNA polymerase, sigma 32 subunit, RpoH TERM 1240 1436226 - 1436248 + T 72 -7.7 -3.99898 | opp_overlap 1436226 AGGTTAATTTATTAA GAGGCTTGC GATTA GCAATCCTC TTTCTCACTTACTTC TERM 1241 1436310 - 1436280 - T 77 -11.3 -2.73338 | gap 1, opp_overlap 1436280, overlap 1436279 1436269 1436282 ATAATTCTTTCAAAT CATGCGCCAAGGTC TCTG GACCTTGA-GCATG TTTGACATACAAGCG TERM 1242 1436280 - 1436310 + T 75 -9.1 -3.59979 | gap 1, opp_overlap 1436280 1436279 1436269 1436282 ATAATTCTTTCAAAT CATGCGCCAAGGTC TCTG GACCTTGA-GCATG TTTGACATACAAGCG Pnec_1635 1436841 - 1436257 - | electron transport protein SCO1/SenC Pnec_1636 1437742 - 1436849 - | protoheme IX farnesyltransferase TERM 1243 1437697 - 1437723 + g 81 -3.8 -5.44119 | gap 2, opp_overlap 1437692 1437693, overlap 1437696 1437703 AAACCCAATATTGAC GC-CAAC-GTGG CATAA CCACTGTTGCGC TTTTTTTAGAGTCAC Pnec_1637 1438866 - 1437745 - | cytochrome oxidase assembly TERM 1244 1437784 - 1437770 - G 82 -7.8 -4.63218 | TTCTTTTGAATAAAA GGCCTC CAA GAAGCC CAATAACTCATTCTG Pnec_1638 1439522 - 1438866 - | putative transmembrane protein Pnec_1639 1440241 - 1439519 - | SURF1 family protein TERM 1245 1439731 - 1439717 - G 74 -7 -4.21607 | opp_overlap 1439726, overlap 1439718 TTCACGCAAGATAAA GGGGGC TTG GCCCCA ACCATGGAGCTTACG TERM 1246 1439730 - 1439718 - G 74 -10.5 -3.12482 | opp_overlap 1439726, overlap 1439717 TCACGCAAGATAAAG GGGGC TTG GCCCC AACCATGGAGCTTAC Pnec_1640 1440338 - 1440550 + | hypothetical protein TERM 1247 1440582 - 1440601 + T 100 -13.6 -5.72053 | opp_overlap 1440582 GGGTGCCAAAACAAA TCGGGGCT TCAA AGCCCCGA TTTTTTGTTTACTTA TERM 1248 1440601 - 1440582 - T 100 -13.6 -4.64861 | opp_overlap 1440582 GGGTGCCAAAACAAA TCGGGGCT TCAA AGCCCCGA TTTTTTGTTTACTTA Pnec_1641 1441468 - 1440614 - | cytochrome c oxidase subunit III TERM 1249 1441347 - 1441337 - G 72 -8.2 -3.68024 | GCCCGCAAGACAGAA GGGG CCG CCCC AAGAGGCATGATTTA Pnec_1642 1441696 - 1441499 - | putative transmembrane protein Pnec_1643 1442277 - 1441693 - | cytochrome c oxidase assembly protein CtaG/Cox11 TERM 1250 1441985 - 1442016 + g 72 -8.8 -3.57792 | gap 1, opp_overlap 1441995, overlap 1441995 ATCTCTGTCATTTCA CCGG-GATGAACTTC TAA GAAGTTTTTCACCGG TTTAAAAGTGAATGG TERM 1251 1441995 - 1442005 + g 74 -5.4 -4.60924 | opp_overlap 1441995, overlap 1441985 TTTCACCGGGATGAA CTTC TAA GAAG TTTTTCACCGGTTTA TERM 1252 1442396 - 1442353 - R 77 -7.4 -4.30441 | opp_overlap 1442360 1442394, overlap 1442344 1442360 CTACAACACTCAAAA GAATGAAGCCCATCCTACGA TTAT TCGCAGCAAGGGCTTGTTTC TCTGAAGAATTAAAT TERM 1253 1442389 - 1442360 - R 72 -8.5 -3.694 | opp_overlap 1442360, overlap 1442353 ACTCAAAAGAATGAA GCCCATCCTACGA TTAT TCGCAGCAAGGGC TTGTTTCTCTGAAGA Pnec_1644 1444013 - 1442406 - | cytochrome c oxidase, subunit I Pnec_1645 1445214 - 1444057 - | cytochrome c oxidase, subunit II TERM 1254 1444332 - 1444344 + g 71 -3.3 -4.79223 | TCGCTGCATACACTT TAGCG CCG CGCTC TTTTTGCTCATCTAA Pnec_1646 1446266 - 1445394 - | Methyltransferase type 11 Pnec_1647 1446784 - 1446975 + | phosphoribosyltransferase TERM 1255 1446964 - 1446980 + F 73 -5.2 -4.63218 | opp_overlap 1446964 CCAATCGAAAGAGTA CAACAT GTTTA ATGTTG TTTTGTTCGAACCAG Pnec_1648 1446968 - 1447438 + | RNA methyltransferase, TrmH family, group 2 Pnec_1649 1448483 - 1447461 - | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Pnec_1650 1449031 - 1448507 - | protein-export protein SecB TERM 1256 1449097 - 1449072 - R 75 -8.3 -3.74526 | CTATTAAGCCAATAA TGGATCAAGCT TTCC AGCACGATCCA ATGCCACCAAGTCGT Pnec_1651 1449314 - 1449060 - | glutaredoxin 3 Pnec_1652 1449737 - 1449324 - | Rhodanese domain protein TERM 1257 1450064 - 1450054 - g 71 -6.8 -4.15222 | ACTGGGCTCAATAAA GCAG AAA CTGC CGAAAAATACGGAGA Pnec_1653 1449760 - 1450449 + | phosphoglycerate mutase 1 family TERM 1258 1451823 - 1451796 - g 89 -4.8 -5.71295 | opp_overlap 1451796 AGATAAAAATAAAAA GTCGCCTGAACT CGGT AGTGCAGATGAC TTTATGCTTTCTCAA Pnec_1654 1450462 - 1451895 + | carboxyl-terminal protease TERM 1259 1452153 - 1452135 - T 82 -10.4 -3.97689 | TACAACGCCAAATAA TGCATACT GAG AGTATGCA TCGGTAAAAGCAAAG Pnec_1656 1454427 - 1452676 - | phosphoenolpyruvate-protein phosphotransferase TERM 1260 1453512 - 1453501 - G 79 -4.4 -5.1356 | GTCCATGAATAAAAA TTCC GAGC GGAA CAAACCAACACCTAC Pnec_1657 1454702 - 1454433 - | Phosphotransferase system, phosphocarrier protein HPr Pnec_1658 1455142 - 1454720 - | PTS system fructose subfamily IIA component Pnec_1660 1457412 - 1456114 - | glutamate--cysteine ligase TERM 1261 1457456 - 1457432 - R 100 -12.2 -4.67048 | gap 1, overlap 1457434 CCATTTTAAAAGAAA GACGCGGGATC CTCG GATCCCGCG-C TTAAAACCAGGCAGC TERM 1262 1457455 - 1457434 - R 100 -15.9 -3.94471 | overlap 1457432 ATTTTAAAAGAAAGA CGCGGGATC CTCG GATCCCGCG CTTAAAACCAGGCAG TERM 1263 1457488 - 1457463 - R 86 -11.1 -4.07687 | ATCCCGCGCTTAAAA CCAGGCAGCCA ACCA CGGCCGCCTAG TGAGGGGTAAATCTA TERM 1264 1458606 - 1458580 - R 74 -9.4 -3.41581 | overlap 1458577 1458581 TAATCCACCAATGAA TGCTCCGCCTTC CGT GAAGGCAAAGCT ATAGCCATAAATAGC TERM 1265 1458605 - 1458581 - R 84 -12.9 -2.64466 | overlap 1458577 1458580 AATCCACCAATGAAT GCTCCGCCTTC CGT GAAGGCAAAGC TATAGCCATAAATAG Pnec_1662 1458948 - 1458790 - | hypothetical protein Pnec_1663 1459300 - 1458962 - | nitrogen regulatory protein P-II Pnec_1664 1460171 - 1459326 - | hypothetical protein TERM 1266 1459580 - 1459562 - G 74 -10.4 -3.21099 | opp_overlap 1459541 CTGGTTGACCAGCAA CATATTGG TAA CCAATATG ACCATTCAACAAAAT Pnec_1665 1460395 - 1460649 + | protein of unknown function DUF526 Pnec_1666 1460988 - 1460686 - | hypothetical protein Pnec_1667 1461241 - 1460978 - | hypothetical protein TERM 1267 1461215 - 1461182 - G 76 -8.2 -4.07306 | opp_overlap 1461189, overlap 1461183 ACATCCAATTAGAAA GGCTAAAGCCGCCA AAAGAG TGACGGCTTTAACG ATCCCTCTAAACAAC TERM 1268 1461214 - 1461183 - G 78 -11.7 -3.03661 | opp_overlap 1461189, overlap 1461182 CATCCAATTAGAAAG GCTAAAGCCGCCA AAAGAG TGACGGCTTTAAC GATCCCTCTAAACAA Pnec_1668 1462232 - 1461222 - | lipoic acid synthetase Pnec_1669 1462873 - 1462229 - | lipoate-protein ligase B Pnec_1670 1463147 - 1462881 - | protein of unknown function DUF493 Pnec_1671 1463877 - 1463164 - | hydrolase of the alpha/beta superfamily Pnec_1672 1464020 - 1463904 - | putative ferredoxin 2fe-2s protein Pnec_1673 1465262 - 1464834 - | VanZ family protein Pnec_1674 1465351 - 1466136 + | biotin--acetyl-CoA-carboxylase ligase TERM 1269 1466435 - 1466424 - g 72 -5.8 -4.4959 | opp_overlap 1466424 TGGAAGCAATTAAAA GGTG ATAG CACC TATTCAGGGATGCGT Pnec_1675 1466133 - 1466942 + | putative transcriptional acitvator, Baf family Pnec_1676 1467427 - 1466939 - | rfaE bifunctional protein TERM 1270 1467011 - 1466990 - G 80 -6.5 -4.82901 | TCGTTCGTATAAAAA CGGTATAGC AATC GCCTTACCG CCCCAGCTTTTTACT Pnec_1677 1467520 - 1467975 + | glutathione peroxidase Pnec_1680 1469460 - 1469621 + | protein of unknown function DUF1365 Pnec_1681 1469764 - 1470081 + | protein of unknown function DUF1365 TERM 1271 1470594 - 1470583 - T 76 -5.8 -4.86001 | opp_overlap 1470582 ACCATTTTAGAAAAA GCCA TCTA TGGC AATTGGTATGGATCC TERM 1272 1471857 - 1471847 - T 70 -5.4 -4.3467 | ATTTCGATATCAAAA TTGC CGA GCAA ACGATTGACGCAAAT TERM 1273 1472305 - 1472341 + T 73 -6 -4.33258 | gap 1, opp_overlap 1472311 1472315, overlap 1472311 CAAAATTTAAACGGC AACGAAGCAATAACCAC GAAA GGGGTTATTGCTT-GTA TTTATCTTTGCGAAT TERM 1274 1472336 - 1472311 - T 76 -10.5 -3.3907 | opp_overlap 1472305 1472311, overlap 1472315 TTAAACGGCAACGAA GCAATAACCAC GAAA GGGGTTATTGC TTGTATTTATCTTTG TERM 1275 1472311 - 1472336 + T 82 -10.5 -3.99432 | opp_overlap 1472311 1472315, overlap 1472305 TTAAACGGCAACGAA GCAATAACCAC GAAA GGGGTTATTGC TTGTATTTATCTTTG Pnec_1684 1472977 - 1472330 - | DSBA oxidoreductase Pnec_1685 1473582 - 1472974 - | Sporulation domain protein Pnec_1686 1475345 - 1473618 - | arginyl-tRNA synthetase Pnec_1687 1475381 - 1475698 + | Domain of unknown function DUF1840 Pnec_1688 1478445 - 1475695 - | methionine synthase Pnec_1689 1479506 - 1478442 - | homocysteine S-methyltransferase TERM 1276 1478490 - 1478476 - G 78 -5.6 -4.82901 | overlap 1478478 TTCTCGCGATAAAAA GCGCGA GGC TTGCGC TGCGCAACCGCATTC TERM 1277 1479026 - 1478995 - G 74 -10.8 -3.16564 | overlap 1479012 TGCTCATGGTATGAA GCACGCAAAGCGTC AAAG GTCACATTGCGTGC ACCAGGATCATTTAC Pnec_1691 1480148 - 1479930 - | beta-lactamase domain protein Pnec_1690 1479581 - 1480018 + | conserved hypothetical membrane associated protein Pnec_1694 1482071 - 1482241 + | hypothetical protein Pnec_1695 1482304 - 1482804 + | flavin reductase domain protein FMN-binding TERM 1278 1483261 - 1483250 - T 71 -4.4 -4.60258 | opp_overlap 1483250, overlap 1483246 CTATCAAACAACAAA CCAA ACCC TTGG ATTGATCGATAACAT TERM 1279 1485394 - 1485430 + T 70 -10.2 -2.61274 | gap 1, opp_overlap 1485393 1485410, overlap 1485393 CAACATTCCGAACAC GTTGCGCCAC-ATCCAA TAAG TTGGCTTGTGGCGCCAC CTTAATTGCAATAAA TERM 1280 1486136 - 1486160 + T 79 -7.9 -4.35524 | opp_overlap 1486137, overlap 1486137 1486157 ATCTGCACCATAGTA AGCAGTTGTGA TGG TCACAATTGCA TTTTGCGTTTGCGGA TERM 1281 1486159 - 1486137 - T 71 -9.2 -3.29471 | opp_overlap 1486136 1486137 1486157 TCTGCACCATAGTAA GCAGTTGTGA TGG TCACAATTGC ATTTTGCGTTTGCGG TERM 1282 1486137 - 1486159 + T 81 -11.4 -3.20832 | opp_overlap 1486137, overlap 1486136 1486157 TCTGCACCATAGTAA GCAGTTGTGA TGG TCACAATTGC ATTTTGCGTTTGCGG TERM 1283 1486257 - 1486291 + T 88 -11 -4.2461 | gap 1, overlap 1486286 ATAGAGAGCACTGGC CTGCAGATGAATATG TCGGTC CA-ATTCATCTGCAG TTTATTCCTGCGGCT TERM 1284 1487920 - 1487950 + T 71 -9.1 -3.36273 | overlap 1487924 1487939 GCGCGCAGTGCATTG GCAACCTCTTGAA AAGCA TTTAAGCGGTTGC TTGATATTGAAAAGC TERM 1285 1488736 - 1488724 - T 77 -9.1 -3.71917 | opp_overlap 1488723 1488724 1488729 AGCTCAAACCGTAAA CAGCC GAC GGCTG CTTCTGTCTTAATGC Pnec_1702 1489138 - 1488812 - | RND efflux system, outer membrane lipoprotein, NodT family TERM 1286 1489217 - 1489187 - R 100 -10.7 -5.09762 | gap 1, opp_overlap 1489192, overlap 1489192 ATTTGAACACAAAAA TACAATCAGGGCTT CGCA AAGCCCTGATT-TA TCTACTGAATTTTGT TERM 1287 1489192 - 1489213 + r 100 -13.1 -4.09822 | opp_overlap 1489187 1489192 AACACAAAAATACAA TCAGGGCTT CGCA AAGCCCTGA TTTATCTACTGAATT TERM 1288 1489213 - 1489192 - R 100 -13.1 -4.17582 | opp_overlap 1489192, overlap 1489187 AACACAAAAATACAA TCAGGGCTT CGCA AAGCCCTGA TTTATCTACTGAATT TERM 1289 1489409 - 1489397 - R 71 -7.7 -3.73525 | ACAAACAGAAAGCAA TGCGA CGT TCGCA AGGATAGCAACAAGT Pnec_1703 1489821 - 1489528 - | hypothetical protein Pnec_1704 1490159 - 1489857 - | hypothetical protein Pnec_1705 1490297 - 1490187 - | hypothetical protein Pnec_1706 1492204 - 1490372 - | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 1290 1491812 - 1491771 - G 73 -10.3 -3.03243 | opp_overlap 1491769 ACCGACTGTGCAATA TCTTTTTGTCCATTAGCAA TATA TTGCTGATGGACTAAATGA GCAATTACTTCAGTA Pnec_1707 1493694 - 1492204 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 1291 1493684 - 1493698 + g 80 -10 -3.90112 | opp_overlap 1493684 AGAACCTTGGGCAAA GCGGAT TTC ATCCGC TTTCCTTGCCCGGCA TERM 1292 1493698 - 1493684 - G 75 -10 -3.54638 | opp_overlap 1493684 AGAACCTTGGGCAAA GCGGAT TTC ATCCGC TTTCCTTGCCCGGCA Pnec_1708 1494638 - 1493730 - | PP-loop domain protein Pnec_1709 1495026 - 1494661 - | dihydroneopterin aldolase Pnec_1710 1495778 - 1495023 - | Dehydrogenase-like protein TERM 1293 1496114 - 1496081 - g 80 -9.6 -3.89346 | gap 2 GCTGGAGCCCACAAA CTGGGGGCTGGCGGCG ACTT CACCACC-GCCCC-AG AATTAAGCCCCCTTT Pnec_1711 1495916 - 1497103 + | protein of unknown function DUF185 Pnec_1712 1498236 - 1497106 - | tRNA cytidylyltransferase Pnec_1713 1498925 - 1498236 - | NAD-dependent epimerase/dehydratase Pnec_1714 1499144 - 1498959 - | NAD-dependent epimerase/dehydratase Pnec_1715 1501142 - 1499184 - | Lytic transglycosylase catalytic Pnec_1716 1501227 - 1501853 + | 5-formyltetrahydrofolate cyclo-ligase Pnec_1717 1502672 - 1501842 - | 5,10-methylenetetrahydrofolate reductase TERM 1294 1502627 - 1502638 + g 74 -5.8 -4.56597 | GATGCAACTTACTCT CACC TTCA GGTG TTTTTGGAGGAAAGA Pnec_1718 1504154 - 1502709 - | adenosylhomocysteinase TERM 1295 1503333 - 1503321 - G 72 -9.1 -3.55219 | overlap 1503325 AACTTGAGCAGATAA GGCAC GCA GTGCC TGAGCAGAGCCTTTG TERM 1296 1504225 - 1504195 - R 72 -8.2 -3.97388 | ATACTGGAGTAGAAA CTCGCTAGCCATTG AAT CATGGGTTAGCGAG CGCGGTTGCAATTAG TERM 1297 1504321 - 1504350 + r 100 -16.7 -3.61178 | opp_overlap 1504323 AACGCTCCTTGAAGG TATGCCGTAATTG TTTA CAATTACGGCATA TTTCGCCTCAATACA TERM 1298 1504348 - 1504323 - R 89 -14.9 -2.52464 | opp_overlap 1504321 CGCTCCTTGAAGGTA TGCCGTAATTG TTTA CAATTACGGCA TATTTCGCCTCAATA TERM 1299 1504399 - 1504421 + r 100 -13.5 -4.03204 | CCTACTTACAGGCCA GCAGCTGCA CGTAA TGCAGCTGC TTTATCGGTTTGCTC Pnec_1719 1505555 - 1504389 - | Methionine adenosyltransferase Pnec_1720 1505950 - 1506438 + | lipid A biosynthesis acyltransferase Pnec_1721 1506442 - 1506603 + | lipid A biosynthesis acyltransferase TERM 1300 1506954 - 1506934 - g 75 -11.1 -2.98493 | overlap 1506931 GTCACCATTAAATCA GCGATCACC TTG GGAGATCGC AAACCACGCCTTCTC Pnec_1722 1506628 - 1507527 + | lipid A biosynthesis acyltransferase Pnec_1723 1507587 - 1508441 + | Diaminopimelate epimerase TERM 1301 1508462 - 1508433 - T 80 -10.9 -3.41222 | opp_overlap 1508433 1508432 1508437, overlap 1508437 TTTGAAGGTGAAACA GAAATCTAAAAGC TGTT GCTCTTAGATTCC GTATTTCTCGCGATA TERM 1302 1508458 - 1508437 - T 79 -8.1 -4.3453 | opp_overlap 1508437 1508433 1508432, overlap 1508433 AAGGTGAAACAGAAA TCTAAAAGC TGTT GCTCTTAGA TTCCGTATTTCTCGC Pnec_1724 1509122 - 1508454 - | orotate phosphoribosyltransferase TERM 1303 1509085 - 1509065 - G 70 -4.7 -4.5442 | overlap 1509060 1509066 1509067 CCCCGAAGGACAAAA CCTTTGCCT CTA AGGCAAAAC GTATAAAGTTATCTT TERM 1304 1509504 - 1509517 + G 72 -5.3 -4.59109 | opp_overlap 1509500, overlap 1509500 AAGAGGCCAAATATC GCTAT CTCG ATAGC TTTTTGCCGCATCTC Pnec_1725 1509131 - 1509913 + | exodeoxyribonuclease III Xth Pnec_1726 1511183 - 1509930 - | major facilitator superfamily MFS_1 TERM 1305 1510610 - 1510624 + g 79 -10 -3.78934 | CGTATTTGATTGGCT CCTTGC TTA GCAAGG TTGTTATCACGCCAA Pnec_1727 1511858 - 1511265 - | methionine biosynthesis protein MetW Pnec_1728 1512994 - 1511855 - | homoserine O-acetyltransferase TERM 1306 1512261 - 1512286 + g 73 -4 -4.8667 | gap 1 TCATTGGATTCACCA TTGGGGCGCTG TAATT CA-CGCCCAAA TTTTTCTGCCATGTC Pnec_1729 1513641 - 1512991 - | transcriptional regulator, TetR family Pnec_1730 1514554 - 1513652 - | acetylglutamate kinase Pnec_1731 1515056 - 1514568 - | transcriptional regulator, TraR/DksA family Pnec_1732 1516214 - 1515156 - | cobalamin synthesis protein P47K Pnec_1733 1517285 - 1516284 - | integrase family protein TERM 1307 1516828 - 1516838 + g 82 -3.2 -5.47159 | GCCGCATCCCGAATC GACT CTA GGTC TTTTTTCTCTTCAGC Pnec_1734 1517940 - 1517266 - | protein of unknown function DUF484 Pnec_1735 1519439 - 1517967 - | glutamyl-tRNA(Gln) amidotransferase, B subunit Pnec_1736 1520953 - 1519436 - | glutamyl-tRNA(Gln) amidotransferase, A subunit TERM 1308 1520743 - 1520717 - G 71 -8 -3.85698 | opp_overlap 1520716 1520735 GCCCCGCGTTACAAA GACATCCTTATG AGC CACAGGGATGCC CGTTAATTTGCCAGA Pnec_1737 1521243 - 1520950 - | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 1309 1521734 - 1521759 + G 70 -10.5 -2.54387 | opp_overlap 1521733 1521737, overlap 1521737 GTATTTTTAATTGAC GAACCAATGGC CGCT GCAATTGGTTC TGGCTTACCAGTTTC Pnec_1738 1521305 - 1522348 + | cell shape determining protein, MreB/Mrl family TERM 1310 1522442 - 1522470 + F 100 -16.9 -4.54727 | CTGATTGTCTGTTTG TCGATCAGCATCG CTC TGATGCTGATCGA TTTTCGTTTCAAAGC Pnec_1739 1522460 - 1523305 + | rod shape-determining protein MreC TERM 1311 1523333 - 1523349 + G 72 -5 -4.56702 | overlap 1523335 GCGGCTACATTCTGC GTCCGG TAAAT CCGGTC TTTATTTACTTCAGC Pnec_1740 1523302 - 1523826 + | rod shape-determining protein MreD TERM 1312 1523874 - 1523895 + G 71 -3.7 -4.90296 | gap 1 CTCGACTCATTTCAA GAG-CGCACT CAT ATTGCGACTC TTTTTGTCACCTTTT TERM 1313 1524429 - 1524445 + G 78 -5.1 -5.09225 | overlap 1524432 AAACCGGATGATCCC GATGCTT TAC AAGCTTC TTTTTTACCTGGCAT TERM 1314 1524432 - 1524442 + G 74 -5.4 -4.64763 | overlap 1524429 CCGGATGATCCCGAT GCTT TAC AAGC TTCTTTTTTACCTGG Pnec_1741 1523835 - 1525742 + | penicillin-binding protein 2 Pnec_1742 1525724 - 1526875 + | rod shape-determining protein RodA TERM 1315 1526943 - 1526914 - T 100 -18.1 -4.44915 | opp_overlap 1526921, overlap 1526921 GAATTATTGAGAAAA TAAAAAAGCCCGG CATG CCGGGCTTTTTTA TCAACAAAGGAAGAA TERM 1316 1526921 - 1526936 + T 100 -11.8 -5.24129 | opp_overlap 1526914 1526921 TGAGAAAATAAAAAA GCCCGG CATG CCGGGC TTTTTTATCAACAAA TERM 1317 1526936 - 1526921 - T 100 -11.8 -5.86976 | opp_overlap 1526921, overlap 1526914 TGAGAAAATAAAAAA GCCCGG CATG CCGGGC TTTTTTATCAACAAA Pnec_1743 1527279 - 1526959 - | histone family protein DNA-binding protein TERM 1318 1527161 - 1527183 + g 84 -10.7 -3.84719 | ATGATGTTCTCGATA GCTGAATTC AATGC GAATTCAGC TTTGGCTTTAGAAAT TERM 1319 1527264 - 1527292 + g 73 -7.5 -4.07568 | opp_overlap 1527263, overlap 1527267 1527272 GCTCCTTATAGATAT TGATGTCAGCGTA CAT TACGCTTACATGA TTTTAACCACAAAAA TERM 1320 1527323 - 1527336 + r 81 -2.4 -5.52384 | opp_overlap 1527323 ATTACAAAAATAAAG TTGC GTTACA GCAA TTTTTTTACTACGAC Pnec_1744 1527647 - 1527444 - | hypothetical protein Pnec_1745 1528009 - 1528212 + | aspartyl/asparaginyl beta-hydroxylase Pnec_1746 1528222 - 1528887 + | Carbonate dehydratase TERM 1321 1529669 - 1529688 + G 79 -7.8 -4.46615 | TTGAGGCTTATATGG CCCACGCT GAAG AGCTTGGG TTTTCCTTGGTGATC Pnec_1749 1529602 - 1529709 + | metallophosphoesterase Pnec_1750 1529997 - 1530338 + | metallophosphoesterase TERM 1322 1530535 - 1530561 + G 80 -12.4 -3.09648 | AACCCGTAGAAAGTT TGGTTGGCTTTG AGA CAGAGCTAACCA TCTTGCGCTCTCTTA Pnec_1751 1530342 - 1530986 + | serine/threonine protein kinase Pnec_1752 1530995 - 1531153 + | protein kinase Pnec_1753 1531274 - 1532011 + | RNA-binding S4 domain protein TERM 1323 1532639 - 1532654 + G 72 -9 -3.53012 | opp_overlap 1532639 GATTGATATTGCAAA CATGCG GATG CGCATG TTTAAAGCCGGCGAA TERM 1324 1532654 - 1532639 - g 72 -9 -3.64103 | opp_overlap 1532639 GATTGATATTGCAAA CATGCG GATG CGCATG TTTAAAGCCGGCGAA Pnec_1754 1532178 - 1533698 + | peptide chain release factor 3 Pnec_1755 1534225 - 1533992 - | hypothetical protein TERM 1325 1534949 - 1534959 + H 80 -4.6 -5.28176 | overlap 1534946 AAATCAGCTTTAGTT GGGG CGA CCTC TTTTTTGTAGATAAG Pnec_1758 1535263 - 1535694 + | MOSC domain containing protein Pnec_1759 1535819 - 1536100 + | GCN5-related N-acetyltransferase TERM 1326 1536703 - 1536688 - T 100 -10.4 -5.45652 | ATCTCTAATAAAAAA GCCACC CGAA GGTGGC TTGCCGTTAGCGCAT TERM 1327 1537017 - 1536999 - T 73 -6 -4.32034 | GCAGTACGATGAAAA TGAGCGAA CTA TTCGATCA GAATGCGCATAGAGA Pnec_1761 1537798 - 1537328 - | hypothetical protein Pnec_1762 1538063 - 1537830 - | hypothetical protein Pnec_1763 1538278 - 1538123 - | hypothetical protein Pnec_1764 1539019 - 1538381 - | cytochrome B561 TERM 1328 1538997 - 1538974 - G 71 -3.9 -4.89009 | gap 1, overlap 1538976 1538977 AGAGCCAATGAAAAA TACGCGTGGG TACAT CCCACAC-TA AGATGCTGTGTTTAT Pnec_1765 1539405 - 1539016 - | diheme cytochrome c Pnec_1766 1539838 - 1539386 - | Domain of unknown function DUF1924 TERM 1329 1539856 - 1539840 - R 75 -4.5 -4.89966 | AGACCCAAAAACAAA CAATAAA ACT TTCATTG CTATTACCCCTTAAA Pnec_1767 1540231 - 1539962 - | hypothetical protein Pnec_1768 1540990 - 1540277 - | haloacid dehalogenase, type II Pnec_1769 1541425 - 1541027 - | hypothetical protein TERM 1330 1541491 - 1541466 - R 100 -13.5 -3.57144 | opp_overlap 1541466 1541472, overlap 1541472 TTGTCCATGCCCAAA TAAAAACCACC CGAA GGTGGTTTTTA TTTAGCCGCCGCCAG TERM 1331 1541466 - 1541491 + r 100 -13.5 -3.53012 | opp_overlap 1541466 1541472, overlap 1541472 TTGTCCATGCCCAAA TAAAAACCACC CGAA GGTGGTTTTTA TTTAGCCGCCGCCAG TERM 1332 1541485 - 1541472 - R 91 -8.1 -5.27938 | opp_overlap 1541472 1541466, overlap 1541466 ATGCCCAAATAAAAA CCACC CGAA GGTGG TTTTTATTTAGCCGC TERM 1333 1541472 - 1541485 + r 91 -8.1 -5.27335 | opp_overlap 1541466 1541472, overlap 1541466 ATGCCCAAATAAAAA CCACC CGAA GGTGG TTTTTATTTAGCCGC Pnec_1770 1541645 - 1541493 - | hypothetical protein TERM 1334 1541626 - 1541636 + g 79 -2.6 -5.27779 | opp_overlap 1541626 GCTAAAGCCAATAAA TTAA GTA TTAA TTTTTTCATCTTAAA TERM 1335 1542459 - 1542446 - R 100 -8.1 -5.72207 | opp_overlap 1542441 1542446 TCGAAATTAAAAAAA CCACC CGAA GGTGG TTTTAATGTTTCTTG TERM 1336 1542446 - 1542459 + r 82 -8.1 -4.55446 | opp_overlap 1542446, overlap 1542441 TCGAAATTAAAAAAA CCACC CGAA GGTGG TTTTAATGTTTCTTG Pnec_1772 1543342 - 1542659 - | two component transcriptional regulator, Fis family Pnec_1773 1545639 - 1543345 - | integral membrane sensor signal transduction histidine kinase TERM 1337 1545619 - 1545607 - G 74 -3.3 -5.08824 | opp_overlap 1545616 TTGTGATGTAAAAAA GCTTG AAT CCAGC AGGGTTGTTATAGAT Pnec_1774 1546178 - 1545636 - | putative periplasmic ligand-binding sensor protein TERM 1338 1546117 - 1546129 + g 70 -4.9 -4.51197 | TCCGCCCTCTCTAAT TCAAA AGA TTTGA TTTTGATTCCTTCTG TERM 1339 1546210 - 1546191 - R 77 -3.6 -5.31855 | overlap 1546194 CATTAAGAACAAAAA GAGGAATT GTTT AATTCTTC GGCTCATGGCCCATT Pnec_1775 1547529 - 1546276 - | Fmu (Sun) domain protein TERM 1340 1547542 - 1547555 + r 91 -9.5 -4.61231 | CAAATTAATTTGCTC CGGGG TATT CCCCG TTTTTAGCCATATGC Pnec_1776 1548397 - 1547531 - | peptidase M48 Ste24p Pnec_1777 1549398 - 1548400 - | methionyl-tRNA formyltransferase Pnec_1778 1549922 - 1549407 - | peptide deformylase Pnec_1779 1550147 - 1550632 + | SMF family protein TERM 1341 1550639 - 1550613 - f 90 -8.9 -4.65895 | gap 1, opp_overlap 1550594 1550613 1550612 1550614 CTTTTTACCTAAAAA CCCCG-TTTAAA CAGG TTTAAAGCGGGG GGTTTTCTAAAAAAC TERM 1342 1553449 - 1553427 - g 72 -5.5 -4.41348 | gap 1, overlap 1553429 GCTTCCGCAAAGAAA CGGGCAGGCG CAAG CGC-TGCCAG CAAGTCTGCAGCGAA Pnec_1780 1550829 - 1553591 + | DNA topoisomerase III Pnec_1782 1556482 - 1554617 - | Phosphoenolpyruvate carboxykinase (GTP) Pnec_1783 1557937 - 1556573 - | tRNA modification GTPase TrmE TERM 1343 1557048 - 1557036 - G 83 -9.1 -4.24599 | overlap 1557031 AAGAAAATAACCAAA TCCGC TAA GCGGA TGGAATCCCAAGACC Pnec_1784 1559650 - 1557977 - | 60 kDa inner membrane insertion protein TERM 1344 1558569 - 1558557 - G 71 -3.4 -4.7629 | TTACCAACGTAAAAA TGGA TGTTG TCCA AAAGCCAGAAGATTG TERM 1345 1558861 - 1558848 - G 71 -9.5 -3.18452 | ACCATTGCAATCCAA GCGGG CTCG CCCGC AGCCACTAAAGTTGG TERM 1346 1558965 - 1558995 + g 88 -3.8 -5.64873 | GGTCCAGTAAAGGTG TTGGCCGAAAAGGC GCC GCCAAATGGGCCAA TTTTTTGTTCTTGCG Pnec_1785 1559899 - 1559657 - | protein of unknown function DUF37 Pnec_1786 1560167 - 1559901 - | ribonuclease P protein component Pnec_1787 1560361 - 1560227 - | ribosomal protein L34