TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.47887 %AT, 1909043 nt, 14689 terms. Intergenic: 0.532026 %AT, H2T: 233262 nt, 1447 terms; T2T: 90321 nt, 1226 terms; H2H: 96086 nt, 1281 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|18311643|ref|NC_003364.1| Pyrobaculum aerophilum str. IM2, complete genome (length 2222430) TERM 1 162 - 184 + G 86 -4 -5.40072 | overlap 161 165 ATGCTCCGGCGTGCC CGTCGCCG AGATTGA CGGCGTTG TTTTTTTAAGGCGCG TERM 2 165 - 181 + G 81 -6.5 -4.79949 | overlap 161 162 CTCCGGCGTGCCCGT CGCCG AGATTGA CGGCG TTGTTTTTTTAAGGC TERM 3 424 - 414 - g 74 -8.2 -3.96148 | opp_overlap 413 414 415, overlap 415 CCTCTGGATTACAAA CGCC TCC GGCG AGTTCATAGAGCTTC PAE0001 1 - 957 + | hypothetical protein PAE0002 1427 - 954 - | paREP1 PAE0005 2397 - 1471 - | peptidase, putative TERM 4 1757 - 1773 + g 75 -5.1 -4.69053 | overlap 1758 AGCCCCAAGACGCCG CCGTTGT CTA ACAACGC TTTTATTACGTCGTC TERM 5 2289 - 2277 - G 70 -10.5 -2.71059 | overlap 2256 2274 2273 CGAACACTAAATCCA CGCCG GCG CGGCG GAGCTTGGGCAAGTC TERM 6 3466 - 3450 - g 88 -2.3 -5.49234 | overlap 3452 ATAGTCAAGAAAAAA TATATGA TTA TCATAGA GGAGCCAGAGGCCCA PAE0007 2640 - 3797 + | hypothetical protein PAE0008 3784 - 4143 + | hypothetical protein PAE0009 4456 - 4316 - | hypothetical protein PAE0010 5151 - 4483 - | coenzyme PQQ synthesis protein, conjectural PAE0012 5586 - 5152 - | hypothetical protein PAE0013 6184 - 5759 - | hypothetical protein TERM 7 6389 - 6379 - R 71 -6.8 -4.14392 | opp_overlap 6387 CGTTAATCGCTAAAA GGCA GTC TGCC CCGTGAGCTTTTAAA PAE0014 7134 - 6400 - | hypothetical protein PAE0015 7612 - 7499 - | hypothetical protein TERM 8 7543 - 7528 - G 70 -6.8 -4.13014 | opp_overlap 7534 TTGATAGTTGTAAAA GCCGCT GGCC AGCGAC CTTGCCTAGGAACAG PAE0016 7767 - 7672 - | hypothetical protein TERM 9 8222 - 8198 - g 71 -2.7 -4.75776 | overlap 8200 8202 AATTCAAGTGAAAAA CCCAGAGGC GTGCACA GCCCCCGTG AGGCTCAGCGATGCG PAE0017 7914 - 8318 + | hypothetical protein PAE0019 9208 - 8315 - | hypothetical protein TERM 10 8994 - 8971 - G 74 -8.1 -4.08767 | gap 1 TGTACCTCTTTAAAA GGCCC-CGGC CCTCC GCCGTGAGCC TCGCCCCTCCCCTAC PAE0020 9243 - 10184 + | binding protein, putative PAE0022 10171 - 10818 + | sulfate transport system, permease protein, putative PAE0023 10815 - 11417 + | sulfate transport system, ATP-binding protein, putative fabG 12141 - 11425 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 11 11785 - 11800 + g 70 -6.8 -4.05495 | CAGGAAGGCCCTCAC GGCGTA TATA TGCGCC TTTAAGTTTTTGTTC PAE0026 12450 - 12175 - | hypothetical protein PAE0028 12553 - 13302 + | paREP11 PAE0030 13324 - 14655 + | hypothetical protein PAE0030a 14684 - 14884 + | hypothetical protein TERM 12 14958 - 14970 + G 81 -9.1 -4.07568 | opp_overlap 14957 14958 GAGATTTTAGACAAG GGGAG GCT CTCCC TTTTGCCCAAAGACC TERM 13 15143 - 15165 + G 83 -5.6 -5.06414 | TTTAAAGGCGAGAGG CGTTGTTGTT AGT GATAACGACG TTTTTATTGCCGCCA PAE0033 14898 - 15275 + | hypothetical protein PAE0034 16158 - 15265 - | homoserine kinase TERM 14 15436 - 15448 + gT 71 -9.1 -3.44848 | opp_overlap 15421, overlap 15434 GACGCCGAGAGCCCC CGCCT CAA AGGCG TATTTCCTCACCCGG TERM 15 15580 - 15568 - GT 72 -9.1 -3.54146 | opp_overlap 15567 15566, overlap 15566 GCCGGCAATTAAAGA GGCGA CTC TCGCC GTCTGTCTGACATAA PAE0036 16786 - 16115 - | hypothetical protein TERM 16 16729 - 16755 + gr 72 -4.9 -4.57569 | opp_overlap 16717, overlap 16747 AAATCGCCGGCTTGG GCGACCCGGGG AATAC CCCCATGCCGC TTTTTAACGCCATGG TERM 17 17042 - 17003 - R 100 -18.4 -3.88787 | TGACAGGGGGATAAA CCGGCGGCGCTGGACGGG AACC CCCGCCCGGCGTTGCCGG CTAAATCGGCGCCGA TERM 18 17052 - 17076 + r 80 -7 -4.7219 | opp_overlap 17049 17048, overlap 17053 TGCCGGCTAAATCGG CGCCGACGGC CAGGC GCCGTGGGCC TTTTCTATTCATATC TERM 19 17053 - 17075 + r 77 -10.5 -3.42229 | opp_overlap 17049 17048, overlap 17052 GCCGGCTAAATCGGC GCCGACGGC CAGGC GCCGTGGGC CTTTTCTATTCATAT PAE0039 18208 - 17081 - | hypothetical protein PAE0040 20180 - 18189 - | hypothetical protein TERM 20 18601 - 18588 - G 90 -9.5 -4.53705 | overlap 18590 AACGTTTAGATAAAA CGGCG ACCC CGCCG TGAGCCGCTCCGGCG TERM 21 18755 - 18724 - G 76 -10.8 -3.35438 | overlap 18746 TAGGAGATTCTATAA CCCACGGCCACGTT GCCC AACACGTCCGCGGG CACTTCCAGCGGCAA TERM 22 19972 - 19934 - G 85 -8.7 -4.57569 | gap 1 CCACCGCCTCAAAAA CCCCCGGGCCGGCG-GAG GGAA CTCTCAACGGCTCGGCGG ATACGCCCCTGCACC TERM 23 20176 - 20165 - G 71 -2.2 -4.91109 | CCGCTAGTAGAAAAA GCCA AATA TAGC GCATTATTTTCCTCT PAE0041 20659 - 20180 - | hypothetical protein PAE0042 20731 - 21765 + | egghead-like protein TERM 24 22289 - 22271 - gf 74 -3.2 -5.0133 | opp_overlap 22271, overlap 22273 GAGCTGTTTAAAAAA TGCTAAAA GTG TTTTAGAA TATGTCAAGAGGATT PAE0044 21915 - 22319 + | hypothetical protein PAE0045 22291 - 22641 + | hypothetical protein PAE0046 22679 - 23020 + | hypothetical protein PAE0047 23050 - 23250 + | hypothetical protein PAE0049 24241 - 23237 - | serine protease inhibitor (serpin) TERM 25 23400 - 23383 - GT 73 -10.5 -3.02263 | opp_overlap 23388 ATACGGGCTTGAACA CGACGGC TGTC GCCGCCG CGGCCACAACTCCGT PAE0049a 24968 - 24174 - | hypothetical protein PAE0051 25364 - 25140 - | hypothetical protein PAE0055 27665 - 25782 - | hypothetical protein TERM 26 27579 - 27563 - G 72 -4.3 -4.62783 | GAGTGATGTTAAAAA CGCCACC GGG GGTTACG TAGGCCGGGGCGCCC TERM 27 27671 - 27654 - G 71 -2.7 -4.78107 | CAGGAGGAGGAAAAA GAGGT TTTTCATT ACCTC CGCCTAACTGCCAGC PAE0056 27799 - 27665 - | hypothetical protein TERM 28 27748 - 27714 - G 76 -7.7 -4.20136 | opp_overlap 27714 27734, overlap 27734 ATGGCGAAAATTAAA GCAAGGGCCGTGCCG ATAAA CGCCACAGTCCTGGC GTTGTTGGCCTCCGC PAE0057 28992 - 27787 - | hypothetical protein TERM 29 27926 - 27938 + g 70 -6.9 -4.12198 | AGGCTGTTCTTCACC GCGGC CAC GTCGC TTTTAACAGCTTGTA PAE0061 29077 - 30612 + | extracellular solute binding protein, conjectural PAE0062 32437 - 30629 - | molybdenum transport system permease protein, putative TERM 30 31282 - 31272 - G 70 -6.8 -4.02108 | GCTATCATAATTAAA GTGG CCG CCAC GCCGTAGTACACAGT TERM 31 31789 - 31769 - G 76 -8.1 -4.27467 | GAAGACTAATACAAA CGCCGCGGC GAT GCCGGGGAG AGACAGAGGCAATAC PAE0063 33477 - 32434 - | transporter ATP-binding protein, putative TERM 32 33713 - 33699 - g 73 -4.2 -4.81212 | overlap 33700 GCGATGACAATAAAA CTGGGC TAT ACCCAA ATCGGCATATACGAC TERM 33 34697 - 34685 - g 74 -6.2 -4.56597 | TGTGGCGCTGAAAAA GGCG GTCTG CGCC GAGCAGGGCTCAAAA PAE0064 33561 - 34796 + | translation initiation factor IF-2 subunit gamma PAE0064a 35025 - 34945 - | hypothetical protein TERM 34 35119 - 35137 + G 71 -3 -4.7373 | overlap 35120 GATCAAAAACTCCAT GGCCGTTT AAC ACACGGCG TTTTTAATAACGTGG PAE0065 35047 - 35190 + | hypothetical protein PAE0067 36290 - 35472 - | hypothetical protein PAE0068 38116 - 36287 - | helicase, TERM 35 37441 - 37451 + g 87 -4.6 -5.252 | CAACTATTTTCACAT CGTC TAC GGCG TTTTTTATAAGCCTA TERM 36 37778 - 37795 + g 72 -4.9 -4.62069 | gap 1 CCAAGACTGATAGCC TACCC-AG CGC CTAGGGTA TTTTTCAAGTAAGGC PAE0069 38376 - 38113 - | hypothetical protein TERM 37 38844 - 38855 + G 81 -5.8 -4.82901 | opp_overlap 38840, overlap 38840 TTGCCTCAAACCACT GAGC CCGT GCTC TTTTTCTCCCGCCGC PAE0070 38499 - 39287 + | hypothetical protein PAE0073 39500 - 39829 + | hypothetical protein PAE0075 41745 - 41005 - | hypothetical protein TERM 38 42338 - 42322 - gR 73 -10.1 -3.40403 | CCTCGCCGATGACAA CGGCCTC ACG GAAGCCG GCCGCGCCTTGGCAA PAE0078 42704 - 42327 - | paREP9, associated with SRSRs PAE0077 41774 - 42397 + | hypothetical protein PAE0079 43204 - 42689 - | hypothetical protein TERM 39 42931 - 42948 + g 75 -6.9 -4.34402 | ACTGCCACTTGTGCT CCCGCCT GGGC AGGCCGG TTTTAATCTCCACCG TERM 40 43109 - 43127 + g 80 -11.7 -3.39908 | overlap 43107 43105 ACCCGCCGCCATATT CGGCGTC ATGGG GACGCCG TGTCTTTTAGAGAGC PAE0080 43481 - 43194 - | hypothetical protein PAE0081 44386 - 43478 - | hypothetical protein TERM 41 43912 - 43894 - G 72 -6.7 -4.1552 | gap 1, overlap 43898 CAGCGTCCCAATAAA GAGAGGCG GCCG CGCC-CTC ATGCCCCAACACGCA TERM 42 44391 - 44409 + r 77 -10.2 -3.43288 | ACTACCTCCATGGCA GTGCCGCC AGA GGGGGCAC TTGTCGTCACATTTG PAE0082 45236 - 44370 - | hypothetical protein TERM 43 45144 - 45125 - G 70 -10 -3.23335 | gap 1, overlap 45123 45119 TGTCAGAAACAGACA GCCTCACGC CCA GCG-GAGGC GGTTGCACAGGCGGC TERM 44 46584 - 46550 - H 72 -8.4 -3.68557 | opp_overlap 46549, overlap 46541 46553 AAAAGATAGTTGAAA CATTGTCGCGCTGAAG GCG CCACAGCGCGGCACCG ATGTTCAACCAGAAA TERM 45 46581 - 46553 - H 73 -10.9 -2.63853 | opp_overlap 46549, overlap 46550 46541 AGATAGTTGAAACAT TGTCGCGCTGAAG GCG CCACAGCGCGGCA CCGATGTTCAACCAG PAE0084 46700 - 46903 + | hypothetical protein PAE0086 46970 - 47239 + | hypothetical protein TERM 46 47349 - 47363 + G 88 -5.7 -5.18297 | overlap 47337 CTCGCCCCCCAGTGG GGCTT TCAAC AAGCC TTTTATTTCTTCTTC PAE0087 47280 - 47747 + | hypothetical protein PAE0088 48766 - 47753 - | hypothetical protein PAE0089 48975 - 48829 - | hypothetical protein PAE0090 50060 - 48972 - | hypothetical protein TERM 47 49128 - 49116 - G 74 -6.2 -4.58283 | CAAGTGTTCTAAAAA GCCC TTGAG GGGC CCCGCCAGTCTGTCA TERM 48 49317 - 49341 + g 79 -4.3 -5.01535 | overlap 49339 ATTCCCCACGGCCAG CGCCTCT TTTAAGCCATC AGAGGCG TTTTTATGCTTGTGG TERM 49 50201 - 50182 - g 70 -5 -4.52589 | gap 1, overlap 50184 GCCGCCTATAGAAAA CT-GGCAAG TGC CCTGCCGAG GTTAATAGAGCTGAA TERM 50 50586 - 50559 - g 72 -7.6 -3.99957 | gap 1 CCAAATACTGACAAA CGCAGGCGCGGAG GGC CTC-GCGGCGGCG GTGGACTTCGCCTCT TERM 51 50694 - 50679 - g 72 -10.4 -3.3676 | CTTAACAGTTTACAA GGCCTC CCCC GAGGCC GAGGCGTATAAATAC TERM 52 51037 - 51025 - g 77 -3.3 -5.09173 | overlap 51013 51027 GAAGAGGCGAAAAAA CTGGC CCC GCTAG TCCAAATGGCCCTGA PAE0091 50152 - 51057 + | hypothetical protein TERM 53 51411 - 51401 - f 71 -6.8 -4.09685 | CCTTAGTCGGCAAAA GCCT TAA AGGC CACAGCCACATCCGC PAE0096 51724 - 52272 + | paREP1 PAE0097 52836 - 52315 - | hypothetical protein TERM 54 52414 - 52401 - G 70 -5.2 -4.33248 | overlap 52403 GAATTTTATAACAAA GGCC ATAGCG GGCC GACATGGAACAACAA PAE0098 53797 - 52814 - | hypothetical protein TERM 55 52920 - 52935 + g 72 -6 -4.37658 | overlap 52922 TGCGCCACCGCCCCC CTGCCC ATTA GGGCCG TTTTGTCAAGCACTT PAE0100 54121 - 54348 + | hypothetical protein TERM 56 54573 - 54561 - gf 82 -7.7 -4.45261 | overlap 54550 TAAATAAAGCCAAAA GGCTT AAT AAGCC GAGGGACTTCGAAGA PAE0101 54323 - 54703 + | hypothetical protein TERM 57 54779 - 54797 + F 73 -10.2 -2.96274 | overlap 54775 CTCCCCAGTCTGTCA GCTACGGC GCG GCCGGAGC TCTGCTTATAGCGAC PAE0103 54939 - 55859 + | hypothetical protein PAE0105 56086 - 56712 + | hypothetical protein PAE0106 56712 - 57329 + | hypothetical protein PAE0108 57805 - 57434 - | hypothetical protein PAE0109 60177 - 57805 - | hypothetical protein TERM 58 58938 - 58960 + g 81 -10.6 -3.69323 | opp_overlap 58937 58934 58952 TGCCAACGAAATACT CCTCTGCG CACAAGT CGCAGAGG TTTAGGTCCTCCTCC TERM 59 59500 - 59532 + g 83 -13.4 -3.08679 | gap 1, opp_overlap 59500 TGAGACGAGGAAAAA CTCGCCGCCG-GTAG ACGC CAGCGCGGCGGCGAG TATTAAGTGGGCGAA TERM 60 59532 - 59500 - G 100 -12.8 -4.79223 | gap 2, opp_overlap 59500 TGAGACGAGGAAAAA CTCGCCGCCG-G-TAG ACG CCAGCGCGGCGGCGAG TATTAAGTGGGCGAA TERM 61 59800 - 59819 + g 84 -3.5 -5.19212 | CTGGGGAAGGGGGCA CGGCG GCACGTACAA CGCCG TTTTTTCATCCTCGT PAE0111 61096 - 60164 - | hypothetical protein TERM 62 61048 - 61019 - G 75 -6.9 -4.36914 | overlap 61004 61002 GCCGTCTTTATAAAA GGCGTCCAGGCCG ACCA CCGCCGAGCCGCC CCCCAGCACGAAAAG PAE0112 61968 - 61084 - | hypothetical protein PAE0114 62891 - 61965 - | hypothetical protein PAE0115 63334 - 62888 - | hypothetical protein PAE0116 63419 - 64411 + | hypothetical protein PAE0117 66046 - 64616 - | hypothetical protein PAE0118 66135 - 66389 + | hypothetical protein TERM 63 66856 - 66843 - g 79 -3.7 -5.06816 | opp_overlap 66853 AGGTTGCAAGAAAAA CGTGG GCTA CCTCG CCGAGCTTGGCTACG PAE0119 66414 - 68069 + | hypothetical protein PAE0120 68603 - 68073 - | hypothetical protein TERM 64 68296 - 68306 + g 72 -6.8 -4.19177 | opp_overlap 68303, overlap 68299 TTATTGTTTATTCTT TCGC AAA GCGA TTTGTCTTCGCCGCT PAE0121 69724 - 68735 - | hypothetical protein TERM 65 70060 - 70072 + G 72 -6.2 -4.42653 | overlap 70040 70037 70057 70066 CTGGGGCGCTGGTGG GCCG TTGCT CGGC TTTTGTGCCTGGGCT TERM 66 70332 - 70343 + G 70 -7.2 -4.08706 | GTTTTAAAGAGGGGC GGCG TCTA CGCC TTTCTCTACTCGGAG PAE0122 69828 - 70814 + | hypothetical protein TERM 67 71054 - 71087 + F 73 -8 -4.09685 | GCTGGTTTTACTGTG CGCCAGGGCGTCGG GCGTTG CCGAGCCCCTGGGG TTTTACACAGTGAAG PAE0124 71097 - 71363 + | hypothetical protein PAE0126 71374 - 72024 + | hypothetical protein PAE0128 72118 - 73725 + | hypothetical protein PAE0129 73722 - 74171 + | hypothetical protein PAE0131 74251 - 74508 + | hypothetical protein TERM 68 74729 - 74750 + T 84 -5.1 -5.40072 | opp_overlap 74720 ATATAAGCCACGCTG GCCGCAAAA GAGT TGTTGTGGC TTTTTTTGGGAGCCC PAE0133 75330 - 74890 - | hypothetical protein PAE0134 75926 - 75306 - | hypothetical protein PAE0135 76297 - 75923 - | hypothetical protein PAE0137 76714 - 76373 - | hypothetical protein TERM 69 76706 - 76690 - G 71 -10.9 -2.87132 | CCGCCCGCCGAGAGA TCTCTGG ACG CCAGAGA GTCTCCATAGCCACG TERM 70 77011 - 76995 - R 77 -3.6 -5.252 | overlap 76996 TAGCCTGATAAAAAA CGGCAG TCCGT CTGACG CCCCAGAGGAGCTCC PAE0138 77405 - 77136 - | hypothetical protein PAE0139 77455 - 77640 + | hypothetical protein PAE0141 77840 - 77664 - | hypothetical protein PAE0142 77849 - 78304 + | paREP5a PAE0143 78314 - 78655 + | paREP5b PAE0144 79163 - 78825 - | hypothetical protein TERM 71 79113 - 79129 + g 88 -8.7 -4.62336 | opp_overlap 79110 79108 GTTTTTTAAATAGCG GTGGTTG CCG CAGCCAC TTTTTAAAGTGCCGT PAE0146 80065 - 79166 - | hypothetical protein PAE0148 81050 - 80100 - | hypothetical protein TERM 72 80842 - 80854 + g 71 -2.7 -4.82855 | overlap 80843 TAGGCCGTGGTGCCG TTGTA ATA TACAG TTTTTAGATTTGCTG PAE0150 81485 - 81628 + | hypothetical protein PAE0151 82151 - 81756 - | hypothetical protein TERM 73 81846 - 81872 + g 74 -10.1 -3.53012 | CGCGAGGGCGACGTA CGCGGCGTCGT AAACA GTGACGCCGTG TTTCAAAGCCAGGGC PAE0152 82368 - 82135 - | hypothetical protein TERM 74 82183 - 82194 + g 79 -3.6 -5.15634 | AAGCTCAGCGCTTGG GGGG AAGG CTCC TTTTTTCCTCAACTC PAE0153 83343 - 82432 - | hypothetical protein PAE0154 83693 - 83334 - | hypothetical protein TERM 75 83430 - 83442 + g 87 -4.8 -5.17353 | opp_overlap 83430 GACGTAAAGCTCAAA GAGG TCAGC CCTC TTTTTTAGTACGTGT TERM 76 83780 - 83764 - H 71 -10.1 -3.16564 | GCGGCATTTCAGCAA CGCGACG CGT CGTCACG CCTCAGCGAGGGGAT PAE0157 83923 - 84066 + | hypothetical protein PAE0158 84311 - 84063 - | hypothetical protein PAE0160 84497 - 84327 - | hypothetical protein TERM 77 84803 - 84775 - H 84 -8.1 -4.56597 | overlap 84777 84778 84794 GGTTTCGTTTAAAAA TATGGCGCCGTTA TTA TAACGGCGGCTCA GTCCGCGGAATAGAT TERM 78 84801 - 84777 - H 74 -8.5 -3.90048 | overlap 84775 84778 84794 TTTCGTTTAAAAATA TGGCGCCGTTA TTA TAACGGCGGCT CAGTCCGCGGAATAG TERM 79 84800 - 84778 - H 77 -12 -2.93708 | overlap 84777 84775 84794 TTCGTTTAAAAATAT GGCGCCGTTA TTA TAACGGCGGC TCAGTCCGCGGAATA TERM 80 84943 - 84977 + G 95 -12.7 -4.25104 | opp_overlap 84937, overlap 84944 TATTGATAAGTCTTG GCCCAGCGGCGGCCC CGACT GGGCTGCCGTGGGGG TTTTGCTGAGGGAGG TERM 81 84944 - 84976 + G 100 -16.2 -3.14848 | opp_overlap 84937, overlap 84943 ATTGATAAGTCTTGG CCCAGCGGCGGCCC CGACT GGGCTGCCGTGGGG GTTTTGCTGAGGGAG PAE0163 84923 - 85396 + | mutT/nudix family protein TERM 82 85545 - 85526 - g 70 -10.7 -2.73275 | opp_overlap 85523, overlap 85523 CATTGAGAGACACTA CGGCGTG GCGGGA CACGCCG CCGTCGAGCTTTGCA PAE0164 85425 - 86489 + | tRNA-modifying enzyme PAE0164a 86646 - 86717 + | hypothetical protein PAE0165 86727 - 87071 + | hypothetical protein PAE0166 87061 - 87432 + | paREP11 TERM 83 87438 - 87474 + T 70 -5.1 -4.41633 | gap 2, overlap 87435 CAACCGCTAGTGGCG GGCTGCAGGGGGCTTGT TGTTT AC-CTCCCCCTGC-GCC TTCTTTTTACAAATA PAE0167 87824 - 87429 - | hypothetical protein PAE0168 88186 - 87794 - | hypothetical protein TERM 84 88602 - 88613 + G 70 -7.2 -4.11692 | overlap 88597 TTAAAGTCCACCTGC GCCC TCGA GGGC TTTTACCAGTGCATG PAE0170 88245 - 88883 + | hypothetical protein PAE0171 88870 - 89463 + | hypothetical protein PAE0172 89519 - 90745 + | hypothetical protein PAE0173 90972 - 90760 - | ribosomal protein L24, conjectural PAE0175 91741 - 90956 - | ribulose-1,5-biphosphate synthetase TERM 85 91376 - 91360 - G 70 -6.6 -4.07885 | GATCTCCTCTGAAAA TCACGT CGTCT ACGTGA ACGCCCAGTATAATT TERM 86 92656 - 92673 + G 81 -12.7 -3.23216 | opp_overlap 92656 GCGGTGGCGAACCTA GGCGCCT CAAT AGGCGCC TTCCTCCTACTGCCG TERM 87 92673 - 92656 - g 76 -12.7 -2.52464 | opp_overlap 92656 GCGGTGGCGAACCTA GGCGCCT CAAT AGGCGCC TTCCTCCTACTGCCG PAE0176 91828 - 93081 + | metabolite transport protein PAE0178 93173 - 93466 + | hypothetical protein TERM 88 93607 - 93595 - g 71 -10.5 -2.89564 | opp_overlap 93594 93593 GCGGGAGGTGAGAGA GGCGG GAG CCGCC AATTTAAAAAACCCC TERM 89 93901 - 93881 - g 77 -8.9 -4.08064 | overlap 93868 AAGGCCTTCCTAAAA GCCGCCGGT TTT ACAGACGGC CTACGCGTCTTAGAG PAE0180 93587 - 94363 + | hypothetical protein TERM 90 94387 - 94367 - T 74 -6 -4.66264 | overlap 94368 94379 GAAAACCCCTAAAAA CGCGCCGA TATAG CCGGCGCC TGCAACACGCCGACA TERM 91 94386 - 94368 - T 73 -9.5 -3.38674 | overlap 94367 94379 AAAACCCCTAAAAAC GCGCCGA TATAG CCGGCGC CTGCAACACGCCGAC PAE0181 95193 - 94405 - | hypothetical protein TERM 92 95375 - 95354 - R 95 -13 -3.79113 | ATCGTCGTACAACAA CTCGGCGC ACCCCG GCGCCGAG AGGCAAAAAACGGCA TERM 93 95401 - 95386 - R 73 -2.5 -5.1287 | CCGAGAGGCAAAAAA CGGCA TTCAAC TACCG GGAATAGAGTCAATC TERM 94 98098 - 98077 - R 84 -13.7 -2.92656 | opp_overlap 98093, overlap 98065 AAAGGTACGGATACA GCGCCACTG CTTG CAGCGGCGC GTCTACGCCGTTGAA TERM 95 99060 - 99040 - R 70 -9.6 -3.10761 | TTTCAAGAAACTACA CCAGGCCC TATAG GGGCCAGG AATCTCAAAAAGAGG TERM 96 99447 - 99419 - R 74 -8.7 -3.98075 | AGAGGATTGAAAGAA TACGCCTTCCTCG ACT CGTGGTCGGCGTA GCACATAATCGTCGA TERM 97 99886 - 99838 - R 80 -9.5 -3.98075 | overlap 99824 99851 AGAGGATTGAAAGAA GATCCTCAAGCCACACCACTCTG CCG CAGAGCGGCGTCCCTGGTGAATC TCAAAAAGAGGATTG TERM 98 99873 - 99851 - R 76 -12 -2.53759 | overlap 99838 AAGATCCTCAAGCCA CACCACTCTG CCG CAGAGCGGCG TCCCTGGTGAATCTC PAE0198 101641 - 101069 - | hypothetical protein TERM 99 101433 - 101464 + g 77 -8.7 -4.02581 | gap 1, opp_overlap 101438 GCGTCTACTACTCCG CACAAGCCTCCTCC CTCTA GGCGGGGGC-TGTG TTCTATTTTCTCGGC PAE0199 101900 - 101625 - | hypothetical protein PAE0200 102775 - 101888 - | hypothetical protein PAE0201 103604 - 102756 - | hypothetical protein TERM 100 103189 - 103157 - G 79 -4.9 -5.0133 | gap 2, opp_overlap 103157 103159 GAGCGGTGTAAAAAA CGGCTGAGTCTCTGC TCCTG GC-GAGCCT-AGCCG CCGAGACGTAGCTGT TERM 101 104113 - 104089 - g 84 -10.8 -3.80207 | overlap 104077 GAAGAAAACTGGAAA TTCTCGCCGT TTTGG ACGGCGAAAA AGATGTCGATACTAT PAE0202 103683 - 104288 + | hypothetical protein PAE0204 105754 - 104858 - | hypothetical protein PAE0205 106782 - 105739 - | hypothetical protein TERM 102 106287 - 106270 - G 71 -2.7 -4.82901 | CGCTCCGTATAAAAA GCCTA TATTCAAG TAGGC GAAACACGTATGACA PAE0207 107543 - 106776 - | hypothetical protein PAE0208 109290 - 107626 - | helicase, TERM 103 109146 - 109119 - G 72 -8.4 -3.76048 | opp_overlap 109135 CCTTAAGCAACACAA GCCTTCCACCGC CGTT GCGGTAGAAACC CCGGAGTATTTCCGC PAE0209 109972 - 109280 - | hypothetical protein PAE0210 110946 - 109969 - | hypothetical protein PAE0211 111372 - 110950 - | hypothetical protein TERM 104 111094 - 111109 + g 74 -10.4 -3.50393 | TTTAATAAACTCTTC CTGGGC AAGC GCCCAG TTCTCTAGGCTACGC PAE0212 111782 - 112546 + | hypothetical protein PAE0213 113093 - 112713 - | hypothetical protein PAE0214 113483 - 113166 - | hypothetical protein PAE0215 114325 - 113621 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 105 113764 - 113751 - G 72 -6.7 -4.20712 | CACAAGAGCCTAAAA GTGTC GCCG GACAC CTCGTCCACTAAAAT TERM 106 115522 - 115533 + G 70 -7.2 -4.14243 | opp_overlap 115520, overlap 115520 GGATAAGAAAACGGC CGCC GGGA GGCG TTTTGACGTCGACTG TERM 107 115824 - 115841 + G 73 -11.3 -2.62184 | opp_overlap 115808 GGAGGAGGCAGATGG GCCTCTC CGAG GAGAGGC TGGTCTGGGAGCCCG PAE0216 114440 - 115882 + | phosphoribosylamine--glycine ligase TERM 108 116589 - 116613 + G 83 -9.9 -4.06148 | overlap 116590 GTGGGCGGCAAGGGC TGCTGGCGCGT GGC ACGCGCCGGGG TTTGTCTCAACTATT TERM 109 116590 - 116612 + G 72 -11.2 -3.02966 | overlap 116589 TGGGCGGCAAGGGCT GCTGGCGCGT GGC ACGCGCCGGG GTTTGTCTCAACTAT PAE0218 115885 - 117021 + | amidophosphoribosyltransferase (purF) PAE0219 117018 - 117842 + | phosphoribosylglycinamide formyltransferase TERM 110 118169 - 118138 - g 75 -5.1 -4.614 | gap 1, opp_overlap 118146, overlap 118133 118140 CGTAATTATACAAAA GC-CCCTCCCGCCC TTTGT GGACGAAAAGGCGC TTTTCTCAGCCTTGT TERM 111 118581 - 118597 + G 75 -5.7 -4.60041 | GCGGGAAGGTGGACC CCGCCAC TAA GAGGTGG TTTTTCGACGTGGAT PAE0220 117827 - 118762 + | methylenetetrahydrofolate dehydrogenase (folD) TERM 112 119298 - 119327 + G 86 -10.7 -3.86015 | opp_overlap 119300 119302 119325, overlap 119300 TTCCAACTGGGGGAT AACATCTGCGGCA CAAC TGCCGCAGAAGTG TTTCTAAAACCCGTG TERM 113 119300 - 119325 + G 90 -13.3 -3.51934 | opp_overlap 119300 119302, overlap 119298 CCAACTGGGGGATAA CATCTGCGGCA CAAC TGCCGCAGAAG TGTTTCTAAAACCCG TERM 114 119325 - 119300 - g 89 -13.3 -3.30159 | opp_overlap 119300 119298, overlap 119302 CCAACTGGGGGATAA CATCTGCGGCA CAAC TGCCGCAGAAG TGTTTCTAAAACCCG TERM 115 119323 - 119302 - g 95 -14.5 -3.21772 | opp_overlap 119300 119298, overlap 119300 AACTGGGGGATAACA TCTGCGGCA CAAC TGCCGCAGA AGTGTTTCTAAAACC TERM 116 119469 - 119496 + G 81 -9 -4.07568 | overlap 119470 GCGGAGATCGAGCTG GGGCCCTTGCCC TGTT GGGCAGAGGCCG TTTTAAAAAGGGGCG TERM 117 119470 - 119495 + G 79 -12.5 -3.04398 | overlap 119469 CGGAGATCGAGCTGG GGCCCTTGCCC TGTT GGGCAGAGGCC GTTTTAAAAAGGGGC PAE0221 118752 - 119684 + | phosphoribosylaminoimidazole synthetase PAE0222 120319 - 119681 - | phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) TERM 118 119977 - 120008 + g 77 -10 -3.66178 | opp_overlap 119996, overlap 119980 CCACTACCCTCACGG CCACCCACCGGGAT ATAA AGCCCGGCGGGTCG TTTGGAATTAACGCC PAE0224 120570 - 120316 - | hypothetical protein TERM 119 120907 - 120935 + G 78 -8.2 -4.19953 | gap 1 ACAGATGCGCCTCTA GTGGAG-ATAGCC GAGG GGCTATACGCCAC TTTTAAAATTGAGTC TERM 120 121559 - 121547 - g 70 -5.5 -4.38712 | CCGAGTTGGACAAAA TCCAC ATG GCGGA TAGGGAGATGGGACC PAE0225 120715 - 122808 + | phosphoribosylformylglycinamidine synthase II PAE0226 122811 - 124073 + | amidophosphoribosyltransferase (purF) PAE0227 124112 - 124504 + | hypothetical protein PAE0228 124851 - 124738 - | hypothetical protein PAE0230 124986 - 125468 + | paREP8 TERM 121 125498 - 125471 - T 72 -9 -3.48276 | gap 1, overlap 125444 125472 CGGCCTCTCATAGAA TGCGCCGCGCGGC TAG GCCGC-CGGCTCC GAGCAAGACCGGGGC TERM 122 125497 - 125472 - T 78 -12.5 -2.68823 | gap 1, overlap 125444 125471 GGCCTCTCATAGAAT GCGCCGCGCGGC TAG GCCGC-CGGCTC CGAGCAAGACCGGGG PAE0232 126794 - 125655 - | phosphoribosylaminoimidazole carboxylase ATPase subunit (AIRC) (purK) TERM 123 127055 - 127087 + G 72 -7 -4.19506 | overlap 127050 TATCCTATCCCCCGT CGCC-CTCATGGACCG CGA CGG-CTATGTGCGGCG TTTTCACCTTCACGT PAE0235 127002 - 127232 + | hypothetical protein PAE0237 127434 - 127222 - | hypothetical protein PAE0239 128019 - 128900 + | hypothetical protein PAE0240 128936 - 129112 + | hypothetical protein PAE0242 129407 - 133126 + | hypothetical protein TERM 124 134446 - 134426 - g 78 -8.2 -4.17425 | AGAAGGAGCTCAAAA CCATCGCG GAGTT CGCGCTGG AGTTGAGGCAGAGGG PAE0243 133123 - 134535 + | hypothetical protein PAE0245 136785 - 134977 - | hypothetical protein PAE0246 137797 - 136775 - | hypothetical protein PAE0247 138272 - 138129 - | hypothetical protein PAE0249 139126 - 138506 - | hypothetical protein PAE0250 139954 - 139466 - | phosphoribosylaminoimidazole carboxylase catalytic subunit (AIRC) (purE) PAE0252 140457 - 140026 - | diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) PAE0253 140551 - 140814 + | hypothetical protein TERM 125 141361 - 141339 - g 70 -6.2 -4.22927 | TTATTAATAGACAAA GCCATGTGGT TTC ACGACGTGGC TAGGGAATAGAGGTG PAE0254 140805 - 141371 + | hypothetical protein PAE0256 142059 - 141637 - | hypothetical protein PAE0257 143281 - 142112 - | tryptophan synthase subunit beta TERM 126 142682 - 142667 - G 76 -7.5 -4.25104 | overlap 142676 CTTCTCGTAGTAAAA CGGCC AGAAGA GGCCG CTGAAAGAGCTACCG TERM 127 143550 - 143539 - g 70 -5.8 -4.29106 | opp_overlap 143539 TTTGAGAGCAAGAAA GAGC TTGA GCTC TTCGTTGAGAAACTG TERM 128 143642 - 143602 - g 81 -12.4 -3.14931 | opp_overlap 143597, overlap 143604 TTGAGGCTTGAGCAA TACCCCACCGACGCCCCC TTAGT GGCGGCGGCGGTGTGGGA CGCGTATATGAGGGG TERM 129 143640 - 143604 - g 95 -15 -3.1372 | opp_overlap 143597, overlap 143602 GAGGCTTGAGCAATA CCCCACCGACGCCCCC TTAGT GGCGGCGGCGGTGTGG GACGCGTATATGAGG PAE0261 143521 - 144135 + | methylase, conjectural TERM 130 144832 - 144810 - g 70 -4 -4.70583 | overlap 144811 GCCATTAATAGAAAA GTGGCGGCTC AAC AAGACGCCAT AAGGGCCCAGTTCGA PAE0262 144159 - 145166 + | prohibitin protein PAE0263 145163 - 145501 + | hypothetical protein PAE0264 145542 - 146108 + | signal peptidase TERM 131 146153 - 146124 - f 90 -10.1 -4.52589 | gap 1, opp_overlap 146123 CGCTGGCAGATAAAA CGGCGTGAACCG GGCTGTG CGGTT-ACGCCG ATGATCTAAGGCTTC TERM 132 146456 - 146433 - f 82 -6 -5.1523 | GGCACAACAGAAAAA TAGCCCCCGT ATCT ACAAGAGCTA TAGGGCCACGCTCTC PAE0265 146662 - 147021 + | hypothetical protein PAE0267 147290 - 147880 + | intracellular protease TERM 133 147966 - 147946 - T 78 -5.5 -4.8543 | TAATTGTGAGAAAAA TACGAAAAT AGA ACCTTCGTA GAATAGCTAGAATTG PAE0268 148304 - 148029 - | hypothetical protein PAE0269 148392 - 149345 + | ABC-2 type transport system ATP-binding protein TERM 134 149462 - 149482 + G 70 -4.5 -4.57569 | overlap 149463 149464 TTTTTCGGCAACAGC TTAGCGGGG CTC CCCCGCGGC TTTTTGGCGCAGTAC TERM 135 149641 - 149619 - g 75 -5.4 -4.65895 | TTGGGTACTTAAAAA GGGTGTTGAC CAC GCCCACTCCC AAATCCGCTGTGTTT PAE0270 149342 - 150106 + | membrane protein PAE0272 150134 - 150424 + | Rieske iron sulfur protein, putative PAE0273 151154 - 150417 - | hypothetical protein TERM 136 151149 - 151139 - G 74 -2.4 -5.15969 | CGCGAATCCAAAAAA CCGC CTC GCGC CTCACGCCTATAAAC PAE0274 151221 - 151856 + | superoxide dismutase (sod) PAE0275 152734 - 151862 - | hypothetical protein TERM 137 152469 - 152443 - G 79 -3.7 -5.0925 | gap 2, overlap 152447 GCTCAAAATTAAAAA GCCA-GC-GGGAG TGC CTCCCCGCCTCGC GGTAATAAGACTCTA PAE0276 152782 - 153204 + | hypothetical protein PAE0278 155069 - 153585 - | hypothetical protein TERM 138 154047 - 154061 + g 73 -11.4 -2.80252 | overlap 154044 CACATATACATTGGC GCCGTC GGA GACGGC TACTCTTCTGGGAAT PAE0279 156349 - 155066 - | hypothetical protein TERM 139 155111 - 155099 - G 75 -4.7 -4.77036 | CCTCATTAGTAAAAA CGCCG CAG CGCCG ATCATAACCCCGGTC TERM 140 156765 - 156783 + r 79 -10.2 -3.63627 | opp_overlap 156759 AAAAGGAACTTGAGC CAGGAGGC ACG GCCTCCAG TTTAACATCTGCCGG PAE0280 157387 - 156806 - | hypothetical protein TERM 141 157096 - 157084 - GR 73 -9.1 -3.57561 | CTTTAACTCTCCAAA GCCTC CAA GAGGC CCACAACAAGCCGAG PAE0282 159680 - 157359 - | hypothetical protein PAE0284 160505 - 160080 - | hypothetical protein PAE0285 160967 - 160575 - | hypothetical protein PAE0286 161050 - 160952 - | paREP2b PAE0288 162159 - 161995 - | hypothetical protein PAE0289 163159 - 162146 - | metallo cofactor biosynthesis protein, conjectural TERM 142 162814 - 162804 - G 70 -5.4 -4.33165 | TGAAATCTATCAAAA CTGA TAT TCAG CTCCCTTAGGCCCAA PAE0290 163416 - 163159 - | hypothetical protein PAE0292 163982 - 163413 - | hypothetical protein PAE0293 164013 - 164492 + | hypothetical protein TERM 143 165231 - 165248 + G 76 -10.5 -3.29558 | opp_overlap 165210, overlap 165229 165232 ACGGTGCCGCCACTT TGGCGGC CACA GCCGCCG TGTTCTGGCTTCTCG TERM 144 165232 - 165247 + G 73 -11.8 -2.57253 | opp_overlap 165210, overlap 165231 165229 CGGTGCCGCCACTTT GGCGGC CACA GCCGCC GTGTTCTGGCTTCTC PAE0294 164489 - 165313 + | hypothetical protein PAE0294a 165508 - 165416 - | hypothetical protein PAE0294b 165922 - 166062 + | hypothetical protein PAE0296 166417 - 166202 - | helix-turn-helix protein, conjectural PAE0297 167366 - 166449 - | hypothetical protein PAE0298 167952 - 167482 - | paREP2a TERM 145 168620 - 168674 + G 72 -7.1 -4.1552 | gap 1, opp_overlap 168657 GATAATTACATACCT GCCGACTTCTCCAGCCGCCTTTGACG CCGC CGT-AAAGGCGCTTAGAGACGCGGGC TTTGTTGAGGGGGTG TERM 146 169019 - 169031 + G 75 -5.5 -4.65153 | GTATGAGGTAGGCGG GGATG TGA CGTCC TTTTCCTTTATCTGG PAE0299 168033 - 169259 + | paREP2b PAE0301 169487 - 169972 + | hypothetical protein PAE0302 170437 - 169961 - | paREP1 TERM 147 170431 - 170451 + g 79 -3.9 -5.10497 | overlap 170432 ACCAAGGCTTTGCCA GCTCCACAA CAC TAGTGGAGA TTTTTTAAATAACTT PAE0303 171220 - 170456 - | hypothetical protein PAE0304 171357 - 171205 - | hypothetical protein TERM 148 171385 - 171353 - G 83 -9.7 -4.07687 | opp_overlap 171371 ACCCTGTTGTGAAAA GCCAAGTCCCTCTCC TCC GGCGCAGGGCTTGGC TGTGGCGCCTCCTCT PAE0305 171551 - 171399 - | hypothetical protein TERM 149 171473 - 171485 + g 77 -3.3 -5.0538 | TCTCGTTCTTCTCCA CAAGC CCG GCTAG TTTTTTCAAGTGAAA PAE0307 171946 - 171767 - | hypothetical protein PAE0308 172116 - 171931 - | hypothetical protein PAE0309 172151 - 173206 + | chlorohydrolase, conjectural PAE0311 173884 - 173486 - | hypothetical protein PAE0312 174126 - 173878 - | hypothetical protein PAE0313 174427 - 174245 - | hypothetical protein PAE0314 175128 - 174484 - | hypothetical protein TERM 150 174792 - 174804 + g 71 -10.5 -2.87683 | overlap 174779 174797 CCGGGTCTCCTCCAG GCGGC GGC GCCGC TGTCTGAGACGCTAT TERM 151 175266 - 175282 + H 73 -10.9 -2.57211 | opp_overlap 175257, overlap 175265 TAAATACGGTGCGAA TGGCAGT ATC ACTGCCA CTTCTCAAGGGCAAT PAE0315 175597 - 176487 + | ABC-2 type transport system ATP-binding protein PAE0316 176474 - 177199 + | ABC-2 type transport system, membrane protein PAE0317 177636 - 177307 - | GTP cyclohydrolase I, conjectural TERM 152 178683 - 178718 + G 73 -11.8 -2.674 | gap 1, opp_overlap 178677, overlap 178677 178676 178682 178681 CCCATGGAATTCCGC CTGAGGTGTGGGCG-GA AGT TCTCGCCCCCGCCTCCG CTCTTTACGTCTTGG PAE0318 177677 - 179293 + | hypothetical protein TERM 153 179969 - 179983 + G 81 -9.2 -4.07568 | ACTTAGTGGTGGGGA GGGGGG CTA CTCCCC TTTTAGCCAGGGCCG PAE0320 179299 - 180441 + | hypothetical protein TERM 154 181295 - 181305 + G 81 -6.8 -4.68705 | overlap 181285 181287 ATGTAGCCTCGACGT GGCT TTG AGCC TTTTGTTAACGTTGT PAE0322 180435 - 181586 + | dihydroorotase (pyrC) PAE0323 183009 - 181627 - | iron (II) transporter (feoB-2) part 1, conjectural, authentic frameshift TERM 155 181764 - 181749 - G 70 -6.1 -4.24786 | overlap 181762 TGTACAACACAGAAA GCGTG GCTATA CACGC CGAATAAAAGGCGGT PAE0324 183332 - 183054 - | iron (II) transporter (feoB-2) part 2, conjectural, authentic frameshift TERM 156 183514 - 183489 - H 71 -10.5 -2.71144 | opp_overlap 183488 183487, overlap 183499 TATGCGTCCCAATTA CCTCTGACAAT GCCA ATTGGCAGAGG ACTATTTGTTGCATC PAE0328 183602 - 184522 + | thiamine transport ATP-binding protein PAE0329 185967 - 184519 - | hypothetical protein PAE0331 186945 - 186079 - | thiamine-binding periplasmic protein TERM 157 186144 - 186157 + g 72 -5.3 -4.56597 | ACTCCACGGCGAGTT CTCTA TTCT TAGAG TTTTTAAGCACCGCC TERM 158 186412 - 186433 + g 73 -9.4 -3.67296 | TGAGAGAACCGCCAG CCCTGTGC CCGACT GCACGGGG TTTGGATAGGTAATA PAE0332 189280 - 187058 - | elongation factor EF-2 TERM 159 187415 - 187430 + g 70 -3.9 -4.72272 | CCTGGCGGAGAGGAC CGCCG CGAAAA TGGCG TTTTTAGTCGCAGGC TERM 160 188256 - 188266 + g 72 -5.4 -4.45068 | CCCATGTAGATATAC GTCT GCA AGAC TTTCTTCTTCAACCT PAE0333 190620 - 189328 - | thiamine biosynthesis protein ThiC TERM 161 189678 - 189649 - G 100 -13.5 -3.97511 | gap 1, opp_overlap 189659, overlap 189650 TATGTAACACAACAA GTCCGCCCCCGCCG CCG CGGCTAGGGCGG-C GCCCACCGCCGAGGC TERM 162 189678 - 189650 - G 86 -13.7 -2.97784 | opp_overlap 189659, overlap 189649 ATGTAACACAACAAG TCCGCCCCCGCCG CCG CGGCTAGGGCGGC GCCCACCGCCGAGGC TERM 163 190712 - 190727 + H 71 -3.9 -4.75404 | TCAACTCGCCTTGAC GCGCC CGCAAT GGTGC TTTTTCGTAAAATTT PAE0335 190768 - 191052 + | hypothetical protein PAE0337 191049 - 191489 + | hypothetical protein PAE0338 191524 - 191688 + | hypothetical protein TERM 164 191720 - 191733 + T 79 -8.1 -4.25104 | AGGGGCCGTATGAGG CGCCT CCGG AGGCG TTTTGATGAGGAGGC PAE0339 192757 - 191798 - | cobalamin biosynthesis protein CbiG TERM 165 192113 - 192141 + g 70 -6.7 -4.07568 | TAAAGCCCTAACGGC CTCGGCTATTTCC TGA GGAGATACCCCAG TTTTAGAGCCGAAGC TERM 166 192287 - 192301 + g 70 -7.1 -4.07868 | overlap 192260 192258 TACGCAGACGCGTTT GCCCT CTATT AGGGC TTTATATACCTCTAA PAE0340 193385 - 192744 - | cobalt-precorrin-6Y C(5)-methyltransferase TERM 167 193108 - 193118 + g 71 -3.2 -4.87592 | ATAACAACCACGTCG GCTT TAA AGGC TTTTATTCTCTCTAA PAE0341 193478 - 193705 + | hypothetical protein PAE0342 193746 - 194294 + | hypothetical protein PAE0343 194282 - 195235 + | precorrin-8X methylmutase PAE0344 195225 - 195962 + | precorrin-3B C17-methyltransferase TERM 168 195986 - 196026 + G 73 -9.5 -3.6761 | opp_overlap 195979 195977, overlap 195985 195987 TTAAAATACGGCATC ACCACGGGCTTGGCCGCTG CCG CAGCCGCCAAGGCCGCCGC TCTTTATTCCAAAGG TERM 169 195987 - 196025 + G 81 -13 -2.80244 | opp_overlap 195979 195977, overlap 195986 195985 TAAAATACGGCATCA CCACGGGCTTGGCCGCTG CCG CAGCCGCCAAGGCCGCCG CTCTTTATTCCAAAG cbiD 195959 - 196981 + | cobalt-precorrin-6A synthase cbiT 196978 - 197568 + | cobalt-precorrin-6Y C(15)-methyltransferase PAE0348 197561 - 198187 + | cobalt-precorrin-2 C(20)-methyltransferase TERM 170 198478 - 198438 - g 80 -13.2 -2.52896 | opp_overlap 198435 TGATCCCTCAATTTA CGGCGCGTTGTGGGAGGA GATAA TCCCCCTTCAACTCGCCG GGATTGAGTACGAGA PAE0349 198172 - 198960 + | cobalamin biosynthesis precorrin-3 methylase (cbiF) PAE0351 200164 - 199877 - | hypothetical protein PAE0353 200276 - 200692 + | hypothetical protein TERM 171 200810 - 200796 - T 73 -10 -3.41366 | overlap 200794 GTATGGCAAAATACA GCTCCA CGT TGGAGC GCTCAAGCCCTACAA PAE0355 201618 - 201001 - | hypothetical protein TERM 172 201129 - 201141 + g 72 -5.5 -4.53303 | opp_overlap 201129 AAACTGCGTTAACGA GCCTT CCC GAGGC TTTTGTATACAGCTC PAE0356 203054 - 202050 - | hypothetical protein TERM 173 202892 - 202912 + g 74 -7.5 -4.07687 | opp_overlap 202889 202891 202909 CCCTAAGCAAAACTG CGCTTTGGC GAA GCCAAGCCG TTTTGCCACAGCCCT TERM 174 203252 - 203242 - R 76 -2.4 -5.31275 | opp_overlap 203242 CTTCATTAGAAAAAA CGCC GAG GCCG TTTATATTTTCATCG PAE0360 204043 - 203378 - | ABC transporter, ATP-binding protein PAE0362 205620 - 204046 - | paREP2b TERM 175 205459 - 205471 + g 70 -4.9 -4.45544 | overlap 205465 AATAATTTCATTTAG CTTTT TGA AAAAG TTTTCGTTCCTCACG TERM 176 205570 - 205546 - G 77 -9.9 -3.63895 | GGTAACGACTTTAAA CGCGTCGGCGA ATT CCGCCAAGGCG TCCCTCAGCCCGTGC PAE0364 205731 - 205877 + | paREP2a PAE0366 206833 - 205916 - | iron (III) dicitrate transport system, permease protein, putative TERM 177 206324 - 206312 - G 84 -10.5 -3.73534 | CAACGGGAGCAACAA CGCCG CTG CGGCG TATCCCAACAGCCCA PAE0367 208152 - 206830 - | hypothetical protein TERM 178 207516 - 207529 + g 75 -5.2 -4.61231 | opp_overlap 207524 ACGCAGGCCCCACGT CGGC AATAGA GCCG TTTTTCAACATCTCC TERM 179 208092 - 208118 + g 76 -12.2 -2.59298 | overlap 208084 208090 208092 CAACCGCCAGGCCGG CGAGGGCGGCAA GTA TTGCCGCCCCCA GTATTGTGTAAAGTA TERM 180 208092 - 208119 + g 80 -12 -3.32966 | gap 1, overlap 208084 208092 208090 CAACCGCCAGGCCGG C-GAGGGCGGCAA GTA TTGCCGCCCCCAG TATTGTGTAAAGTAT TERM 181 208157 - 208170 + r 75 -6.7 -4.38412 | opp_overlap 208156 GTTTGAGCCATAAGC TGGAG AATC CTCCA TTATTTATATTTTTT PAE0368 209341 - 208175 - | protease TERM 182 208279 - 208265 - G 70 -5.6 -4.34402 | opp_overlap 208267, overlap 208268 GGCGGCAGACCAAAA GACGCG CTC CGCCTC TTGGGGGCGGCCCCC TERM 183 208282 - 208294 + g 70 -10.5 -2.78996 | opp_overlap 208268, overlap 208282 CGCGCTCCGCCTCTT GGGGG CGG CCCCC CTTTAGGTAGAACTC TERM 184 208282 - 208295 + g 73 -9.5 -3.65351 | opp_overlap 208268, overlap 208282 CGCGCTCCGCCTCTT GGGGG CGGC CCCCC TTTAGGTAGAACTCC TERM 185 209705 - 209682 - g 72 -8.8 -3.75153 | gap 1 CCTCGCTAATTTAAA GCC-AGGCCAC TTA GAGGCCTTGGC AAATAACGCGGTGTT TERM 186 209754 - 209740 - g 75 -7 -4.37092 | opp_overlap 209740, overlap 209742 ACGGCGGTCACAAAA GGCGGG TAC CCCGGC CTCTCCTACCTCCCC PAE0369 209386 - 210216 + | paREP1 PAE0370 211011 - 210547 - | cob(I)alamin adenosyltransferase TERM 187 210882 - 210899 + g 70 -6.3 -4.2828 | gap 1 ACTCCCCCACCTCCT CGCCC-AT GTA ATAGGGCG TTTTCATAACTCCGA PAE0371 212035 - 211040 - | hypothetical protein PAE0372 213041 - 212025 - | hypothetical protein TERM 188 212354 - 212341 - G 78 -9.5 -3.85817 | opp_overlap 212342 212343, overlap 212342 AGTCCCTTGTATAAA GCGGC GGCT GCCGC CATTTGAGTGCCTCC TERM 189 212343 - 212355 + g 70 -10.5 -2.79878 | opp_overlap 212341 212342, overlap 212342 TCCCTTGTATAAAGC GGCGG CTG CCGCC ATTTGAGTGCCTCCC PAE0374 213289 - 213894 + | hypothetical protein TERM 190 214481 - 214457 - gf 93 -10 -4.56775 | opp_overlap 214455 214457 214458, overlap 214458 AGTCCTGGGGAAAAA GCCCCTTAGG GACGT CCTAAGGGGG TATTTCCCCGAGGTG TERM 191 214457 - 214481 + GF 77 -10.7 -3.34715 | opp_overlap 214457 214458, overlap 214455 214458 AGTCCTGGGGAAAAA GCCCCTTAGGG ACG TCCTAAGGGGG TATTTCCCCGAGGTG TERM 192 214480 - 214458 - gf 89 -13.5 -3.33744 | opp_overlap 214457 214455 214458, overlap 214457 GTCCTGGGGAAAAAG CCCCTTAGG GACGT CCTAAGGGG GTATTTCCCCGAGGT TERM 193 214458 - 214480 + GF 84 -14.2 -2.60615 | opp_overlap 214458 214457, overlap 214457 214455 GTCCTGGGGAAAAAG CCCCTTAGGG ACG TCCTAAGGGG GTATTTCCCCGAGGT TERM 194 214531 - 214511 - gf 78 -7.6 -4.35524 | gap 1, opp_overlap 214511 214510 214515 GGCCGAAAGGGAAAA GACGCCCCT GGAG AGGGG-GTC GTGTTTTGACAGACT PAE0376 213891 - 214715 + | asparagine synthetase (asnB) PAE0377 214660 - 215607 + | cobC aminotransferase, conjectural PAE0379 215594 - 216268 + | cobalamin (5'-phosphate) synthase (cobS) PAE0381 216243 - 217214 + | cobalamin biosynthesis protein B (cbiB) PAE0384 217626 - 217796 + | paREP4 TERM 195 217933 - 217901 - g 72 -9.8 -3.29056 | gap 1, overlap 217899 217897 AATGAACATAACAGA GCTC-GTGAGGCGCG TCGG CGCGTCGCACAGAGC CACAGTACAGCAACT PAE0385 217818 - 218105 + | metal ion binding transcriptional regulator, conjectural PAE0388 218379 - 218143 - | hypothetical protein PAE0389 219046 - 218432 - | sulfite oxidase, conjectural PAE0390 219353 - 219219 - | paREP1, degenerate TERM 196 219424 - 219437 + H 70 -5.2 -4.4846 | CGGCAGTGCCCTTTC GGCG AGCCAG CGCC TTTCTTCTTCAATTG PAE0391a 219654 - 219962 + | hypothetical protein PAE0393 219938 - 220237 + | paREP6 TERM 197 220370 - 220360 - g 83 -5.4 -5.06451 | TATGATTGTAAAAAA TGTC TAC GACA ATATCGCCACAAATG PAE0394 220346 - 220633 + | hypothetical protein PAE0396 220627 - 221037 + | hypothetical protein PAE0397 221058 - 221297 + | hypothetical protein TERM 198 221986 - 222009 + G 85 -13.2 -3.14881 | gap 1, opp_overlap 221986, overlap 221971 CTCTACCTCAAGAGA GGCGGGGTGAT TAA ATC-CCCCGCC TTAATAAACGCCTTG TERM 199 222009 - 221986 - g 83 -13.2 -3.08813 | gap 1, opp_overlap 221971 221986 CTCTACCTCAAGAGA GGCGGGGTGAT TAA ATC-CCCCGCC TTAATAAACGCCTTG PAE0398 221845 - 222207 + | hypothetical protein PAE0399 222410 - 222637 + | hypothetical protein PAE0401 222640 - 222990 + | hypothetical protein PAE0402 222995 - 224002 + | hypothetical protein TERM 200 224179 - 224160 - f 89 -11.4 -4.17516 | gap 1 CCGAAACTACAGAAA GCG-GCGCC GAG GGCGCACGC TCGAGGATTTGGCAG TERM 201 224810 - 224795 - g 70 -4 -4.70319 | gap 1, overlap 224796 224797 GGAGGAAAAGGAAAA TC-GCCA TAC TGGCAGA CGACGTCTTCCAGGC PAE0404 224428 - 225429 + | hypothetical protein PAE0407 225611 - 225922 + | paREP8 PAE0409 226175 - 225966 - | hypothetical protein PAE0410 226397 - 226648 + | hypothetical protein PAE0411 226651 - 226935 + | hypothetical protein TERM 202 227019 - 227007 - g 72 -4.7 -4.72986 | TATTCGGACGAAAAA GTGCC GAG GGCGC TGGGAATAACCGCCG PAE0412 226953 - 227087 + | hypothetical protein PAE0413 227117 - 227578 + | hypothetical protein PAE0415 227850 - 227611 - | hypothetical protein TERM 203 227866 - 227856 - H 72 -3.2 -4.97402 | overlap 227860 GAAAAGGCATAAAAA CCAG CGC CTAG GCCAAGACGTGGAAA TERM 204 228001 - 228044 + G 91 -12.4 -3.73775 | GGCCTAGTGAGAAAC GCCGCTGGTAAGGCTCTTCA AGCT TGGAGGGCTCTGCTGGCGGC TTTGCTGAGGCTGGA PAE0417 227875 - 228441 + | paREP1 TERM 205 228524 - 228503 - f 79 -9.3 -4.1721 | ATTGAGAGCGGAAAA GAGGGGCGG AATT CAGCCCCCC AGGTAAATAGCTGAG PAE0418 228549 - 228746 + | hypothetical protein TERM 206 228763 - 228749 - f 80 -12.8 -3.03701 | overlap 228744 GTTGAGGAAATGAGA GGGGCG TCG CGCCCC GCCGGGGGGCTCGGC PAE0419 228788 - 229885 + | glycosyl transferase, putative PAE0420 229882 - 230079 + | hypothetical protein PAE0422 230101 - 230646 + | paREP1 PAE0423 230643 - 231641 + | hypothetical protein PAE0424a 231720 - 231935 + | hypothetical protein PAE0426 232180 - 232344 + | hypothetical protein PAE0427 232338 - 232556 + | hypothetical protein TERM 207 233717 - 233701 - g 81 -10.1 -3.91858 | TAGATATGCGATAAA CCTCAGC GAG GCCGAGG CGTACAGCGTGTTTA PAE0430 232901 - 233893 + | glycosyltransferase (type 1) TERM 208 234676 - 234659 - g 71 -10.5 -2.96249 | overlap 234656 234670 234671 GCTGACGAATAACTA CGGCGAG AAAA CCCGCCG GGCGCTGGAAGCGCT TERM 209 234697 - 234670 - g 78 -7.6 -4.3898 | gap 1, overlap 234659 234656 234671 ACTACGGCGAGAAAA CCCGCCGGGCGCT GGA AGCGCT-GGCGGC CCGCTACCCAGCCGT TERM 210 234696 - 234671 - g 74 -11.1 -3.22906 | gap 1, overlap 234659 234656 234670 CTACGGCGAGAAAAC CCGCCGGGCGCT GGA AGCGCT-GGCGG CCCGCTACCCAGCCG TERM 211 234906 - 234889 - g 95 -14.1 -3.52079 | overlap 234879 GAATACCCGAGATAA CCGCGGG AACC CCCGCGG AGAAATACACCGTAG PAE0431 233901 - 235070 + | glycosyltransferase (type 1) PAE0432 236390 - 235050 - | hypothetical protein TERM 212 235538 - 235480 - Gf 95 -12.3 -3.97602 | gap 1 AGAGAGGCAAAAACA GCGGCGGGGAGGAGGAGGGAGGAGACTC TAAG AAGCCTCTCCCCCACTCCAGCC-GCCGC AATCCCCAGCGCGAA TERM 213 235917 - 235896 - Gf 86 -13.7 -2.90219 | overlap 235886 GAGAACGGCGATAGA GGCCAGGGG CCGC CCCCTAGCC CACAGGTAGAGGCCC PAE0433 236353 - 236883 + | hypothetical protein PAE0434 237203 - 236871 - | hypothetical protein TERM 214 237207 - 237174 - G 72 -5.1 -4.56775 | gap 1, opp_overlap 237191 ACGCCCCGCGAAAAA CGCCGCGGCGATCAGC ACC GCCC-CCTCCACGGCG GTTTTAGCCAGCCAC PAE0435 237970 - 237185 - | hypothetical protein TERM 215 237830 - 237814 - G 95 -11.5 -4.36914 | GTCTGTCCCAGAAAA GGCCCCG GCC CAGGGCC AGCAACCCCGCCAGA PAE0436 239244 - 237967 - | hypothetical protein TERM 216 238722 - 238701 - G 70 -7.1 -4.09685 | overlap 238702 CGCCAGCCGCGAAAA CCCCCCGCC AGTT GCCGGGGCG CCCAACGCCTACGAC TERM 217 238854 - 238840 - G 79 -4.2 -5.06451 | overlap 238851 238852 GAGGAGCTTAAAAAA GGCGTT AAA AACCCC CACTGCGAAGTAGAG PAE0437 239296 - 240480 + | glycosyltransferase (type 2) TERM 218 240716 - 240693 - g 83 -13.2 -3.08813 | gap 1, opp_overlap 240678 240693 CTCTACCTCAAGAGA GGCGGGGTGAT TAA ATC-CCCCGCC TTAATAAACGCCTTG TERM 219 240693 - 240716 + G 85 -13.2 -3.14881 | gap 1, opp_overlap 240693, overlap 240678 CTCTACCTCAAGAGA GGCGGGGTGAT TAA ATC-CCCCGCC TTAATAAACGCCTTG PAE0438 240552 - 240908 + | hypothetical protein PAE0439 241225 - 242160 + | dolichol-phosphate mannosyltransferase TERM 220 242369 - 242351 - g 72 -8.8 -3.74251 | opp_overlap 242351 242350 242348 GAGATCGTCAGGAAA GGCGGGTT TTT AACCCTCC ATCTTTGGGCGCCCC TERM 221 242650 - 242666 + G 71 -10.9 -2.94747 | CCTCGGCGTTAATCC CGACAGA ATC TCTGTCG TGTATAATGGAGTCG PAE0440 242168 - 243250 + | glycosyltransferase (type 1) TERM 222 243977 - 243992 + G 73 -9 -3.57263 | opp_overlap 243987 TCAGCGATAAGAGGT TCTGGC AAAG GCCAGA TTTAGCGCTGGGAGT PAE0441 243247 - 244068 + | glycosyltransferase (type 2) TERM 223 244621 - 244636 + G 71 -3.2 -4.8543 | opp_overlap 244614, overlap 244616 GGTTAGAAGAGGCCA CGGC CCTCTTAC GCCG TTTTTCTACACGTTA PAE0442 244436 - 245560 + | glycosyltransferase (type 1) PAE0443 245595 - 246314 + | hypothetical protein PAE0445 246298 - 249042 + | hypothetical protein TERM 224 249758 - 249774 + G 72 -5.7 -4.56597 | opp_overlap 249758, overlap 249772 ACCCAATGCACATGA CGCCTGT AAG GCCGGCG TTTTTCCGAAAAGGC PAE0446 249094 - 249921 + | glycosyltransferase (type 2) TERM 225 250778 - 250760 - T 71 -3.7 -4.81249 | opp_overlap 250774 250777, overlap 250761 250762 CGCCAAAGTCAAAAA CCCCGCC TATGC GGCTGAG GGGGCGTCCCCCAGT PAE0455 252212 - 251058 - | hypothetical protein PAE0457 252334 - 252462 + | hypothetical protein PAE0458 252540 - 252743 + | hypothetical protein PAE0459 252772 - 254286 + | hypothetical protein TERM 226 254533 - 254565 + F 87 -9.9 -4.34345 | overlap 254536 AAGATCTGCTTTAGG GATCCGCTTGCCTTT TTA AAAGACAAGTGGCTC TTTTCGTGGTGTCTA TERM 227 254536 - 254562 + F 72 -10.2 -2.85364 | overlap 254533 ATCTGCTTTAGGGAT CCGCTTGCCTTT TTA AAAGACAAGTGG CTCTTTTCGTGGTGT PAE0462 255103 - 255459 + | hypothetical protein PAE0463 255493 - 256293 + | hypothetical protein PAE0465 256569 - 257102 + | hypothetical protein TERM 228 258031 - 258054 + G 73 -11.6 -2.7566 | overlap 258044 TGCTGTTTTTAATTC CCCTGCCGCC TGCC GTCGGCGGGG TCGTTGACGTTGGGT PAE0466 257226 - 258146 + | hypothetical protein PAE0467 258960 - 258622 - | glycosyltransferase (type 1) PAE0468 259293 - 259081 - | hypothetical protein PAE0469 259526 - 259434 - | hypothetical protein PAE0470 259516 - 259680 + | hypothetical protein PAE0471 259809 - 259961 + | hypothetical protein PAE0473 260079 - 260423 + | hypothetical protein TERM 229 260717 - 260740 + T 71 -3.9 -4.90869 | AGCCAGTATGAGAAA GCTTATTTC AATTGA GAGATAGGC TTTTTAGTTACTGCT PAE0475 260975 - 260877 - | hypothetical protein PAE0476 261144 - 261049 - | hypothetical protein PAE0477 261302 - 261634 + | hypothetical protein PAE0478 261627 - 264002 + | hypothetical protein PAE0479 264434 - 264309 - | hypothetical protein TERM 230 264729 - 264719 - R 72 -8.2 -3.83323 | overlap 264714 GGGATAGAATGCAAA CCGC CTT GCGG ACACGCGCCGGAGTG TERM 231 264826 - 264804 - R 86 -12 -3.59979 | opp_overlap 264802 264809, overlap 264809 CCCGCCCAGCGCAAA GACAAGCCCC ACG GGCGCTTGTC AACTCTTCTTTGCAA TERM 232 264819 - 264809 - R 72 -8.2 -3.82946 | opp_overlap 264802 264809, overlap 264804 CCAGCGCAAAGACAA GCCC CAC GGGC GCTTGTCAACTCTTC PAE0481 265244 - 264825 - | paREP15, putative coiled-coil protein PAE0482 265407 - 265267 - | hypothetical protein PAE0485 266150 - 266257 + | hypothetical protein PAE0486 266293 - 266529 + | paREP8 TERM 233 266825 - 266792 - f 76 -11.7 -2.73364 | overlap 266794 266803 CGCCCATCCGAATTA GAGTGGCGAAAGCGC AACG GCACTTCCGCCAGCC TTAAGGCTCAGCTTG TERM 234 266823 - 266794 - f 72 -10.7 -2.91274 | overlap 266792 266803 CCCATCCGAATTAGA GTGGCGAAAGCGC AACG GCACTTCCGCCAG CCTTAAGGCTCAGCT PAE0487 267069 - 267302 + | hypothetical protein PAE0489 268186 - 267650 - | paREP1 TERM 235 267802 - 267827 + g 70 -9.7 -3.18023 | gap 1, overlap 267800 TGCGGTACATGCTTG CCGCGAGGTCTG GAT CAGGCC-CGTGG TATTGATACTCGTGC TERM 236 268057 - 268014 - G 76 -12.4 -2.61274 | overlap 268013 TCCAGCCTAAGCAAT GCCGCCAGCAGAGCCCTCCA AGCT TGAAAGGCCTTACCAGCGGC GTTTCTCACTAGGCC PAE0490 268243 - 268494 + | hypothetical protein PAE0492 268704 - 269144 + | paREP15, putative coiled-coil protein PAE0496 270282 - 270452 + | hypothetical protein PAE0497 270814 - 271062 + | hypothetical protein PAE0498 271218 - 271451 + | hypothetical protein PAE0499 271587 - 271790 + | hypothetical protein PAE0505 273325 - 273663 + | hypothetical protein TERM 237 273857 - 273881 + F 72 -10.7 -2.88758 | AACCCGACCGATATT TGTCGCTGGTT TAA AGCCGGCGGCA TGTGTAAAGGATTGT PAE0506 273975 - 274706 + | paREP15, putative coiled-coil protein PAE0507 275620 - 275802 + | hypothetical protein TERM 238 276201 - 276227 + G 85 -11.5 -3.59698 | overlap 276202 AGGGGTTCCCTAGGC ACGCAGGGCGG CCTCA CCGCCTTGCGC TTATCTGTCCCCTAC TERM 239 276202 - 276226 + G 90 -15 -2.75498 | overlap 276201 GGGGTTCCCTAGGCA CGCAGGGCGG CCTCA CCGCCTTGCG CTTATCTGTCCCCTA PAE0510 276135 - 276323 + | hypothetical protein PAE0512 277419 - 276685 - | hypothetical protein TERM 240 277315 - 277338 + g 70 -5.9 -4.25056 | opp_overlap 277293 TGCCAGCTCCTCCAC GGCGCTGAG ATCCGG CTCGCCGCC TTTCTTAGTGGCGTA PAE0513 278759 - 277542 - | hypothetical protein TERM 241 277592 - 277578 - G 70 -7 -4.09685 | opp_overlap 277587 277590, overlap 277556 GGCGAGTTCGTAAAA GTCGCC GTA GGCGGC CAGGGCCCTCTCTTG TERM 242 278041 - 278051 + g 88 -5.4 -5.23316 | TCTCCCCCTAGTTTA TTCC TAA GGAA TTTTTTCATATCCTC PAE0514 279382 - 278747 - | hypothetical protein PAE0515 280438 - 279434 - | hypothetical protein PAE0518 281526 - 281068 - | hypothetical protein TERM 243 281256 - 281236 - G 72 -7.5 -3.96148 | GTGGCCGACTATAAA GAGATCCTC TGT GAGGGCCTC CGCCTTGGCCGCCCA PAE0522 281977 - 282447 + | paREP15, putative coiled-coil protein TERM 244 282833 - 282851 + T 79 -4.5 -5.14163 | GCCACGCCCCGGTGC GCCGC CAACTAACA GCGGC TTTTTATTCGTAACT TERM 245 282968 - 283006 + T 95 -14.4 -3.52113 | opp_overlap 282974 GTTAGGCGCCTTTCT GACAGAGCCCCAGCGGCC AGA GGCCGCCGTGTCACTGTC TTATCCATTTTCCCA TERM 246 283000 - 282974 - T 74 -11.4 -2.87132 | opp_overlap 282968 CGCCTTTCTGACAGA GCCCCAGCGGCC AGA GGCCGCCGTGTC ACTGTCTTATCCATT PAE0527 283562 - 282999 - | paREP1 TERM 247 283430 - 283387 - G 100 -16 -2.79183 | opp_overlap 283387 283386 283425, overlap 283398 TCCAGGCGTAGCAGA GCCGCCACCAACGCCCTCCA AGCC TGAAAGGCCTTGCCGGCGGC GTTTCTCACGAGGCC TERM 248 283802 - 283790 - H 83 -9.1 -4.36914 | GGGCTGTGTACAAAA GCCTC TAG GAGGC CGTCAACACAGTTAT PAE0531 284293 - 284643 + | hypothetical protein PAE0532 284875 - 284660 - | hypothetical protein PAE0534 285303 - 284869 - | hypothetical protein TERM 249 285254 - 285239 - G 72 -10.4 -3.31501 | ATCAACTTGTTACAA GCGCGT ATGG ACGCGC TTGAACTCACATCAA PAE0536 285455 - 286018 + | hypothetical protein PAE0538 286156 - 286281 + | hypothetical protein PAE0539 287941 - 286523 - | hypothetical protein TERM 250 286943 - 286956 + g 72 -5.3 -4.45201 | AGCCGGTTTATCTTT TAGTG TAAT CACTA TGTTTTTTTCTACCC TERM 251 288377 - 288387 + G 81 -6.8 -4.63486 | TTGACAAAAAATTCC GCCA AAT TGGC TTTTATTACAAAGAT PAE0540 287989 - 289197 + | glycosyltransferase (type 1) TERM 252 289277 - 289291 + G 70 -3.6 -4.70772 | TTGTAAACTACCGGT GTTTTA TCT TAGAAC TTTTATTGGATATCT TERM 253 290114 - 290124 + G 70 -6.8 -4.08216 | TCAGTATATGGCGAC TGGC CGG GCCA TTTTGGCAGAAATGA PAE0541 289194 - 290345 + | glycosyltransferase (type 1) PAE0542 290342 - 291508 + | glycosyltransferase (type 1) PAE0543 292664 - 291498 - | glycosyltransferase (type 1) TERM 254 292061 - 292074 + g 82 -2.5 -5.36364 | overlap 292055 TGTACCCTATTATTA TATAA CTAT TTATA TTTTTATATTTTTCA TERM 255 292203 - 292191 - G 72 -4.8 -4.67755 | overlap 292180 292179 ATACCTACGCAAAAA GGCA TAGAT TGCC TTAGACCAAACAACT TERM 256 292356 - 292368 + g 72 -4.9 -4.7254 | GGCGCCTATTAAATT CATAA GGA TTATG TTTTTAGTAGGAAGT PAE0544 293611 - 292661 - | glycosyltransferase (type 2) PAE0545 294663 - 293608 - | hypothetical protein PAE0546 295943 - 294660 - | hypothetical protein TERM 257 295033 - 295021 - G 75 -5.5 -4.66537 | overlap 295022 CGGTGGAATATAAAA CGCCT ATC AGGCA CGTAGACCCAGTGTT PAE0548 296583 - 296071 - | paREP7 PAE0550 297210 - 297422 + | paREP7 PAE0551 297425 - 297511 + | hypothetical protein PAE0552 297519 - 297857 + | hypothetical protein PAE0555 298492 - 298839 + | hypothetical protein TERM 258 299410 - 299423 + G 75 -5.2 -4.62336 | overlap 299409 CGCTCTTCTACTACC CGGC CACGCC GCCG TTTTTCAACTGGAGT TERM 259 299550 - 299587 + G 72 -4.8 -4.59853 | opp_overlap 299550 GAGCCGCTGGTACAA GTGCCTAGGGCGAC GTTATTAGTA GTCGCCATGGGGAC TTTTTACGGCATTGG PAE0556 298884 - 300179 + | amino acid permease PAE0558 300890 - 301762 + | hypothetical protein PAE0559 301935 - 301759 - | hypothetical protein PAE0562 302807 - 302385 - | paREP8 PAE0563 303366 - 302854 - | ADP ribose hydrolase, putative (mutT/nudix family protein) TERM 260 304312 - 304326 + G 70 -7 -4.0371 | AACGCCACAGGACTG CCCCCC GAT GAGGGG TTTATGTCGCGCCTC PAE0564 303850 - 304809 + | hypothetical protein TERM 261 304864 - 304884 + G 91 -12.5 -3.71552 | opp_overlap 304849 CTACCCGGGGCCCAT GGCAGAGGC GTT GCCACTGCC TTCTATTGGTCCCCT PAE0566 304862 - 305839 + | hypothetical protein PAE0568 307024 - 306065 - | cation efflux system protein, conjectural PAE0567 305869 - 306156 + | hypothetical protein TERM 262 306770 - 306758 - GT 71 -6.9 -4.08706 | CTCGTAGGATATAAA GGCCC CTG AGGCC ATTACCGCGAGGGAG PAE0570 307775 - 307026 - | indole-3-glycerol-phosphate synthase TERM 263 307666 - 307676 + g 75 -6.8 -4.41548 | opp_overlap 307666 307665 GCAATTATTCCAAAT TCCC CAA GGGA TTTTATAAAATCTAC PAE0573 307829 - 308491 + | hypothetical protein uppP 309281 - 308481 - | undecaprenyl pyrophosphate phosphatase PAE0577 309321 - 309794 + | hypothetical protein TERM 264 310055 - 310071 + G 83 -10.1 -4.13767 | AGCGTAATGGTTACT GGCGTCG GCA CGACGTC TTTTAGAGTCAAGGG PAE0579 310028 - 311182 + | metallo cofactor biosynthesis protein TERM 265 311354 - 311343 - g 74 -5.8 -4.58395 | overlap 311345 311346 GGGATTTTTGAAAAA GAGG TTAA CCTC GCCGTTTTAAAAGGC TERM 266 311827 - 311811 - g 79 -3.5 -5.09895 | GACTTATTGAAAAAA GCCAGCG ATC CGAGGGC CACAGTGGAGGCACT PAE0580 311160 - 312053 + | porphobilinogen deaminase (hemC) PAE0581 313028 - 312057 - | heme biosynthesis protein TERM 267 312514 - 312504 - G 70 -4.6 -4.57073 | TATTTTGCCGAAAAA CGCC ATG GGCA CGCCGGCTTGCGATA PAE0583 314502 - 313492 - | delta-aminolevulinic acid dehydratase TERM 268 313792 - 313804 + g 78 -9.1 -3.9009 | CATTACCTCCTTCAC CGCCT CAT AGGCG TTTCTGGGATCCATT TERM 269 314430 - 314414 - G 77 -6.5 -4.63586 | overlap 314427 ATAGGATATATAAAA TCGCTTG AAT CCAGCGA GGTCTCCGCCACTGC PAE0585 315155 - 314499 - | siroheme synthesis protein, conjectural TERM 270 314710 - 314698 - G 71 -3.3 -4.8667 | TACACCTCATAAAAA GTAGG TAT CCAAC TACGCTTAATGCAGT PAE0586 315362 - 315183 - | hypothetical protein PAE0589 316041 - 315403 - | hypothetical protein TERM 271 315433 - 315448 + g 100 -10.4 -4.93365 | CCTTAACGCATTTAG CGCCGT CCAC ACGGCG TTTTTAATTGTCGAC TERM 272 315930 - 315946 + g 72 -5.1 -4.57569 | CCACTAGGTAATCTC CGTCG GGCACTA CGACG TTTTTCCGGAGCTCG PAE0590 316748 - 316023 - | uroporphyrin-III C-methyltransferase TERM 273 318020 - 318009 - g 70 -3.6 -4.72333 | AAGGAGATGTAAAAA CGCC GCAA GACG TCAGAGAAAGCAACG PAE0594 316934 - 318205 + | glutamate-1-semialdehyde aminotransferase (hemL) PAE0596 318209 - 319327 + | metallo cofactor biosynthesis protein TERM 274 319820 - 319800 - g 70 -6.2 -4.1822 | gap 1 GGCGAGTTGAATAAA CTC-CTCAC AAAA GTGAGAGAG TACCGCGACGAGTAT PAE0597 319683 - 319928 + | hypothetical protein TERM 275 320237 - 320269 + G 79 -9.7 -3.85698 | overlap 320234 CACGGGCCGGACCGC GGCGACGTTGCGTCT CTG GGACTCCCCGTCGCC TTTATAGAGGGGGAG PAE0598 319958 - 320539 + | hypothetical protein TERM 276 321182 - 321162 - g 76 -12.5 -2.60079 | overlap 321159 321158 GGAGTGCACAACGTA GGCGAGGGC TTC GCCATCGCC GCCAGCCTTCTGGCC PAE0600 320793 - 321581 + | hypothetical protein PAE0601 322751 - 321558 - | glutamyl tRNA reductase (hemA) TERM 277 321718 - 321730 + g 70 -6.2 -4.15833 | opp_overlap 321712 GCTAATACAGCCGTA GGGC AACCG GCCC TTTTCCCCTCCTCCT TERM 278 322537 - 322560 + g 74 -6 -4.51743 | gap 1, overlap 322539 322540 ATGGACTCCGCATAG CGCCTGTAACG CAA CGTTAC-GGAG TTTATTTCCTCCTCA PAE0602a 322956 - 322879 - | hypothetical protein TERM 279 323724 - 323714 - g 81 -6.8 -4.66833 | overlap 323715 CGGTAATTGTAAAAA TGCC GGA GGCA GAGCGGCGGGTGGAG purP 323299 - 324339 + | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein PAE0605 324549 - 324319 - | hypothetical protein PAE0606 325423 - 324596 - | oxidoreductase, conjectural purP 326488 - 325463 - | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase TERM 280 326824 - 326841 + H 80 -7.1 -4.60924 | opp_overlap 326811 CATCAAGGCGGCGTT GAGATTT TAAT AAATCTC TTTTTAAACAGTTTG PAE0611 326856 - 327368 + | hypothetical protein PAE0612 327685 - 327449 - | hypothetical protein PAE0613 328326 - 327661 - | hypothetical protein TERM 281 327743 - 327713 - G 77 -11.9 -3.18264 | gap 1, overlap 327715 CGTTTTATTGAGTAA TAGCGCCAGGCAGT CCAC AC-GCCCGGCGCCA GCAGTGCGGAAAAGA TERM 282 327741 - 327715 - G 81 -12.3 -3.1552 | gap 1, overlap 327713 TTTTATTGAGTAATA GCGCCAGGCAGT CCAC AC-GCCCGGCGC CAGCAGTGCGGAAAA TERM 283 328452 - 328439 - g 70 -3.8 -4.64657 | opp_overlap 328439 CCAAACGTTGAAAAA CCTC GGCGTG GAGG TTTTAATTGACGTCA TERM 284 329220 - 329230 + G 72 -8.2 -3.79419 | opp_overlap 329210, overlap 329218 329219 AAAGAGCTGGCCTTC GCCG CCG CGGC TGTTTTGTGCGGCCC TERM 285 329306 - 329288 - g 74 -2.3 -5.03145 | overlap 329291 329292 GAAGTGCCTAAAAAA TTACGGC GTTAA GCCGCCA GACGGGTTTAAGAGG PAE0614 328374 - 329423 + | hypothetical protein PAE0615 331089 - 329401 - | dihydroxy-acid dehydratase TERM 286 330015 - 329991 - G 81 -8.4 -4.41548 | overlap 329993 CCACATCGTATAAAA CTCCCGCCTC GGGGA GGGGCGGGGG TTGCCACCTATCCAG PAE0616 332160 - 331120 - | metallo cofactor biosynthesis protein PAE0617 332664 - 332161 - | oxidoreductase, truncation PAE0620 333137 - 332799 - | hypothetical protein PAE0622 333345 - 335192 + | aldehyde ferredoxin oxidoreductase (aor) PAE0624 335264 - 335989 + | hypothetical protein TERM 287 336198 - 336178 - g 86 -6.8 -5.0133 | overlap 336180 GAGCTGTTGAAAAAA TACGGAGG GCTCT CCCCCGCA GATGCGTCAGTGCTT TERM 288 336196 - 336180 - g 70 -7.2 -4.13561 | overlap 336178 GCTGTTGAAAAAATA CGGAGG GCTCT CCCCCG CAGATGCGTCAGTGC PAE0626 335986 - 336321 + | hypothetical protein PAE0627 336998 - 336309 - | hypothetical protein TERM 289 336432 - 336418 - G 77 -2.7 -5.14563 | overlap 336419 336420 GCTGTGATTAAAAAA GCGGC GGGAA GCGGC GTTCCCATCAGCGCA PAE0628 337519 - 337019 - | hypothetical protein TERM 290 337473 - 337493 + g 88 -5.3 -5.2189 | overlap 337475 337476 GTCTTCTCGACGCAT TCCTCCGCG GGA CGCGGAATA TTTTTTAATGCTTCG TERM 291 337475 - 337491 + g 76 -7.9 -4.23218 | overlap 337473 337476 CTTCTCGACGCATTC CTCCGCG GGA CGCGGAA TATTTTTTAATGCTT TERM 292 337476 - 337490 + g 75 -11.4 -3.12304 | overlap 337475 337473 TTCTCGACGCATTCC TCCGCG GGA CGCGGA ATATTTTTTAATGCT PAE0630 337562 - 338680 + | tyrosyl-tRNA synthetase PAE0632 340269 - 338839 - | hypothetical protein TERM 293 339250 - 339240 - G 72 -5.4 -4.56597 | opp_overlap 339240 CGGGGTTTTTAAAAA CTTC TAT GAAG TCCTTCTCTCTCTTC TERM 294 341156 - 341176 + G 100 -9.7 -4.77986 | GGCCACGCTGTACAC GCGGCTC AGGCTTA GAGCCGC TTTTTCACTATTTAG PAE0634 340308 - 341372 + | hypothetical protein PAE0635 341759 - 341448 - | hypothetical protein PAE0636 341851 - 342687 + | hypothetical protein PAE0637 343706 - 342684 - | peptidase ( proline dipeptidase) PAE0638 344103 - 343729 - | hypothetical protein TERM 295 343816 - 343800 - G 70 -4.3 -4.5493 | opp_overlap 343800 343802, overlap 343802 AGCTAAAGAAAATAA CAGAGAC TGT GTCGCCG TCTCTTACCTCTCCA PAE0639 344148 - 344639 + | hypothetical protein TERM 296 344860 - 344849 - g 81 -5.8 -4.84914 | overlap 344852 AGCGAGATAACAAAA GAGC TGGG GCTC CCCAAAAGCACAGTA TERM 297 344974 - 344958 - g 77 -6.5 -4.66833 | TCGTAATTCTAAAAA GGCCTAT TTC AGAGGCC TCAAGAGCTTAACCT PAE0640 344633 - 344986 + | hypothetical protein PAE0641 345380 - 344961 - | hypothetical protein TERM 298 345205 - 345220 + g 72 -7.5 -3.91066 | AACTGCTCCTCTGTG GGCCC CCCTCT GGGCC TTCTCTTCTTTAACT TERM 299 345760 - 345743 - g 70 -10.5 -2.79968 | overlap 345742 TATCTAAGCCTAAAC GCCGCCG CGGC CAGCGGC TACGGCATAGCCGTC PAE0643 345590 - 346087 + | hypothetical protein PAE0644 346656 - 346066 - | hypothetical protein PAE0645 346669 - 347547 + | ribosomal protein S6 modification protein (rimK) PAE0648 347971 - 347756 - | paREP10 TERM 300 347846 - 347872 + g 71 -3 -4.83615 | CGCCAATGCGGTGTT TATGTCGTCT GCAGGAG AGACGCCGTA TTTTTGTAGAGCGTA PAE0649 348633 - 347965 - | hypothetical protein TERM 301 348790 - 348777 - g 75 -5.2 -4.6856 | overlap 348779 TAAATACCGCAAAAA CGCC GTCCCT GGCG AGGGCGAGATGAAAT PAE0651 348706 - 349296 + | uracil DNA glycosylase (PA-UDGa) PAE0652 349320 - 350207 + | hypothetical protein TERM 302 350215 - 350234 + G 72 -5 -4.59109 | CTCTATGAGAACTTT TGAGCGGA GTTA TTCGCTTA TTTTTGGACGATCTC PAE0653 350204 - 351814 + | hypothetical protein PAE0655 353491 - 352853 - | hypothetical protein radA 351906 - 352907 + | DNA repair and recombination protein RadA TERM 303 354192 - 354179 - g 77 -5.9 -4.61231 | overlap 354180 TGATATTGTGAAAAA CGCCC TAGA GGGCA AGCCGTTGCCCAAAT TERM 304 354590 - 354574 - g 73 -3.7 -4.77567 | overlap 354581 ACGGCGAGAAGAAAA TGGGAAA GCT TTTCACA AAGCTGTCGGAGATC PAE0656 353595 - 355193 + | hypothetical protein PAE0658 355622 - 355161 - | hypothetical protein PAE0659 355668 - 355982 + | hypothetical protein PAE0660 355982 - 356476 + | hypothetical protein PAE0661 356507 - 356797 + | H+-transporting ATP synthase subunit F (atpF) PAE0662 356827 - 357393 + | hypothetical protein TERM 305 358252 - 358233 - g 70 -4.2 -4.67038 | gap 1, opp_overlap 358197, overlap 358235 358236 CTTTTAAAATTAAAA GACCCCTCC ACG GG-GAGGCC GCTTCTGGAACGTAC TERM 306 358668 - 358700 + G 100 -11.3 -4.46155 | overlap 358666 AGACTGGCCTACAGC CGCCACTACCCGG CTATTGA CTGGCTAGTGGCG TTTTCTAGATATGTG PAE0663 357390 - 359171 + | V-type ATP synthase subunit A rpoH 359243 - 359470 + | DNA-directed RNA polymerase subunit H TERM 307 361683 - 361672 - g 70 -7.2 -4.14243 | TAGGTTATTCGAAAA GGCC GGCT GGCC AAAACGCAGTAGTTG TERM 308 362030 - 362020 - g 88 -8.2 -4.67048 | overlap 362021 362022 GTATTTTAAAAGAAA GGCG CGA CGCC TCAGTCGCCGTTAGG PAE0665 359505 - 362888 + | DNA-directed RNA polymerase subunit beta PAE0666 362969 - 365623 + | DNA-directed RNA polymerase subunit alpha PAE0667 365620 - 366759 + | DNA-directed RNA polymerase subunit A'' PAE0668 366801 - 367109 + | ribosomal protein L30 nusA 367102 - 367536 + | transcription elongation factor NusA-like protein rps12P 367576 - 368019 + | 30S ribosomal protein S12P PAE0671 368019 - 368801 + | DNA-directed RNA polymerase subunit D (rpoD) PAE0672 368827 - 369195 + | 50S ribosomal protein L18e PAE0673 369192 - 369755 + | ribosomal protein L13 TERM 309 369844 - 369832 - g 74 -2.6 -5.06414 | opp_overlap 369840 TGTGGGCAAGAAAAA GACC GCAGT GGCC AGGGCCATAATTAAG TERM 310 370036 - 370060 + G 70 -4.3 -4.56597 | gap 1, opp_overlap 370035 370036 CGTGGCTGTTAGAAT CGCCA-TGGC GAGGGG GCTAGTGGCG TTTTTCCAAAGCCAG TERM 311 370133 - 370121 - g 70 -6.2 -4.18401 | CCATATATGTTAAAA GGCG ATCCG CGCC GTACTGAGCATAAGA rps9p 369758 - 370198 + | 30S ribosomal protein S9P PAE0675a 370195 - 370395 + | DNA-directed RNA polymerase subunit N PAE0676 370446 - 370703 + | small nuclear ribonucleoprotein homolog (Sm-like) PAE0677 370700 - 371908 + | S-adenosylmethionine synthetase PAE0678 373668 - 371905 - | hypothetical protein TERM 312 372987 - 373012 + g 81 -13.3 -2.5955 | overlap 372983 TCTCGCGCGCCGGGA CTCCGCCCC CTCTCGCC GGGGCGGAG TAAATTGTCACAGCT TERM 313 373030 - 373048 + g 76 -9.6 -3.82208 | AATTGTCACAGCTAT GTCTATGC TAC GCATAGGC TTTACGTATTTCCTA PAE0680 374592 - 373672 - | hypothetical protein PAE0681 374624 - 375127 + | hypothetical protein TERM 314 375319 - 375309 - g 85 -6.8 -4.8048 | opp_overlap 375308, overlap 375318 CCTGTATATCAAAAA CCTC GAA GAGG CTCTTGATAGCCTAG PAE0683 375280 - 375966 + | cytidyltransferase TERM 315 376327 - 376315 - g 74 -3.3 -5.00616 | GGTGGTCTTAAAAAA GCCCA CTA TCGGC GTTGCGAAATCAAGG PAE0684 375947 - 376594 + | DNA endonuclease V, conjectural PAE0685 376960 - 376559 - | hypothetical protein PAE0686 377772 - 376969 - | multiple sugar transport permease protein TERM 316 377385 - 377359 - G 75 -5.3 -4.58685 | overlap 377364 AAATGGTGTGAAAAA TATGAGCA-AGCC CAA GGCTATGC-CATA CAGAGTGTCAAATAG PAE0688 378593 - 377769 - | multiple sugar transport permease protein PAE0689 380002 - 378590 - | multiple sugar binding protein TERM 317 379712 - 379689 - G 81 -9.5 -4.14243 | opp_overlap 379688 CAGTGCACTTGAAAA GCAGCCGGG GGACTG CCCGCCTGC ATTAATGCCAGAATT TERM 318 379752 - 379767 + g 70 -5.4 -4.43859 | gap 1, overlap 379744 GCATTTACGCCAGCA CCGCCAG GTA CTG-CGG TTTTCTCAACTTGTA PAE0692 380580 - 380353 - | hypothetical protein PAE0694 381568 - 381765 + | hypothetical protein PAE0695 381814 - 382092 + | translation elongation factor aEF-1 beta subunit TERM 319 383135 - 383115 - g 70 -11.1 -2.82015 | CCCAGACGCAGTAGA CCCGGCGTT GAG AAGGCCGGG GAGATTCGACAGAGA PAE0696 382129 - 384324 + | AAA family ATPase, CDC48 subfamily protein TERM 320 384414 - 384400 - g 70 -4.2 -4.68593 | GCGAGGATGTAAAAA CGCTTT TAA AACGCG CCAATATCAACATCT TERM 321 384501 - 384481 - g 100 -5.4 -5.72616 | AGTTATACAAAAAAA TCTACGTC AAGAG GACGAAGA GGGAGGGGAGGGATA PAE0697 384321 - 384542 + | hypothetical protein PAE0698 384568 - 385608 + | flap endonuclease-1 PAE0700 385708 - 385875 + | hypothetical protein PAE0701 385857 - 386474 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TERM 322 386610 - 386600 - g 77 -3.2 -5.14563 | CGCCTTAGTAAAAAA TGCC TTT GACA TGTGGAGAAAAGAGG PAE0702 386523 - 386777 + | hypothetical protein aspC 388060 - 386774 - | aspartyl-tRNA synthetase TERM 323 386943 - 386929 - G 72 -5.6 -4.57073 | overlap 386916 386931 GATGGCTTTCAAAAA GCCTGG GAT CCAGCC CCCTCTTTTTCATCT TERM 324 386991 - 387007 + g 71 -9.4 -3.54051 | CTCTTGTGTATCCTG GTGGCG CCTGA CGCCAC TTCTATGCCGTTTAT PAE0705 388610 - 388089 - | transcription elongation factor NusA-like protein TERM 325 388343 - 388358 + g 72 -4.6 -4.59773 | opp_overlap 388355, overlap 388345 TCACGCTCCTCCCGA GTGCTG AGGA CAGCTC TTTTTCAAACTGGAC TERM 326 389035 - 389003 - g 79 -12.7 -3.12847 | AATTTGGATATGGAA TCGAGGGCGGCACTG TGG CAGTTCCGCCTTCAA AATTCCGCCGTTATT TERM 327 389129 - 389115 - g 73 -11.4 -2.80935 | overlap 389117 ACGCGAGGGAGTAGA GAGGGC AAT GCCCTC GGAGACGCACAGGGA PAE0707 388666 - 390363 + | hypothetical protein PAE0708 390538 - 390344 - | hypothetical protein PAE0710 390930 - 390568 - | peptidyl-tRNA hydrolase TERM 328 391379 - 391395 + G 72 -7.9 -3.90048 | overlap 391380 CCGCCCAGAGACTTT TTCGCCG ATG CGGCGAC TCTTTTTGAAAAGGG TERM 329 391380 - 391394 + G 75 -11.4 -2.93708 | overlap 391379 CGCCCAGAGACTTTT TCGCCG ATG CGGCGA CTCTTTTTGAAAAGG TERM 330 393008 - 393019 + G 72 -7.2 -4.15044 | TATACTCCGTACACG GCCG GCCA CGGC TTTGTTAACGCCACC TERM 331 393345 - 393365 + G 72 -7.5 -3.87869 | overlap 393351 TGTCAGTCTCCGCAT CTGCCGTGG CGC TCACGCCAG TTTATAAAAAGTTGG PAE0712 390998 - 394774 + | surface layer-associated stable protease, conjectural PAE0714 395208 - 394771 - | diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein) PAE0715 395849 - 395247 - | hypothetical protein sdhA 395970 - 397715 + | succinate dehydrogenase flavoprotein subunit sdhB 397717 - 398430 + | succinate dehydrogenase iron-sulfur subunit PAE0718 398427 - 398849 + | succinate dehydrogenase cytochrome b subunit (sdhC) PAE0719 398840 - 399196 + | succinate dehydrogenase subunit D (sdhD) PAE0720 400044 - 399274 - | proliferating-cell nuclear antigen homolog (PCNA) PAE0721 401178 - 400138 - | electron transfer flavoprotein alpha subunit (etfA) TERM 332 401029 - 401043 + g 72 -5.6 -4.57073 | AATGACTCCGCCCAC CTCAGC TCC GCCGAG TTTTTGCGCCAGCTC PAE0722 401976 - 401182 - | electron transfer flavoprotein beta subunit (etfB) TERM 333 401276 - 401298 + g 100 -16.3 -2.79831 | TTCCTCGGCGGATAT GTCGCCGGC GATAA GCCGGCGAC TATAGTGGGGCTTCC PAE0723 402271 - 401981 - | ferredoxin like protein PAE0725 403542 - 402268 - | electron transfer flavoprotein-quinone oxidoreductase TERM 334 402445 - 402418 - G 72 -7 -4.17048 | CTCTGTTGAAAATAA CGTCAAGTCTCT GAAT AAAGACTCGTCG CCTAACAACTTATCG TERM 335 402897 - 402884 - G 74 -5.9 -4.53303 | TAGGTGTAGATAAAA CCGCC GCCC GGCAG ATACTCCGTGGGGTA TERM 336 403416 - 403404 - G 72 -7.7 -3.9777 | GCCAATATGCATAAA TACGG CCG CCGTA TAGCTCTTTTGAGCC TERM 337 403482 - 403469 - G 70 -5.9 -4.15833 | opp_overlap 403469 ACTACGACTTTAAAA CCCGC CGAG GCGAG TTTATAAGCTGCGGC TERM 338 404093 - 404071 - g 75 -4.9 -4.79223 | gap 2 GGACATTATTAAAAA CACCGCGCATC TGG GA-G-GCGGTG GCGTCGTGATTTTCG PAE0727 403769 - 404458 + | molybdenum cofactor biosynthesis protein D/E PAE0728 404825 - 404439 - | hypothetical protein TERM 339 404701 - 404737 + g 90 -11.5 -3.90744 | ACCTCTATAGGCTTT GTCAGGGCTTCTGCGAG AAA CTCGCCGATGTCCTTAC TTATTTCAGACGCCG PAE0729 404887 - 405663 + | hypothetical protein TERM 340 406070 - 406095 + G 77 -6.9 -4.56597 | opp_overlap 406069 CTTATTAAAAAAGCC CTTGCCATATT AAGC GAGATGGCAAG TTTTTCAGAGGCGGC PAE0730 405821 - 406195 + | hypothetical protein PAE0731 406222 - 406458 + | transcriptional regulatory protein, conjectural PAE0732 406526 - 406729 + | hypothetical protein PAE0733 406763 - 407434 + | 30S ribosomal protein S7P rfc 407465 - 408454 + | replication factor C small subunit TERM 341 409482 - 409465 - g 78 -5.5 -4.86731 | opp_overlap 409466 409472, overlap 409466 GTGTCGCAAATAAAA GGGAAGC CGAG GCTTCCT CCCTTTATTAAATAC TERM 342 409481 - 409466 - g 71 -9 -3.51557 | opp_overlap 409466 409472, overlap 409465 TGTCGCAAATAAAAG GGAAGC CGAG GCTTCC TCCCTTTATTAAATA PAE0735 408454 - 409722 + | replication factor C large subunit PAE0736 409722 - 410018 + | hypothetical protein cdc6 410093 - 411262 + | cell division control protein 6 PAE0738 411259 - 411552 + | transcriptional regulatory protein (helix-turn-helix), putative TERM 343 411577 - 411589 + G 72 -5.5 -4.5032 | opp_overlap 411568, overlap 411568 TTTAAACGTGGGGGC CCGTT TTG AGCGG TTTGTTCTTGATCTG PAE0739 411569 - 412102 + | hypothetical protein PAE0741 412177 - 413277 + | translation initiation factor IF-2B subunit alpha PAE0742 413383 - 413700 + | hypothetical protein TERM 344 413883 - 413845 - g 91 -11.1 -4.18908 | ATACGTTGAAAATAA GCCCGCGGGAATT GGTGAAGAGGTTA AACTCCCGCGGGC TAGCAGTATATAGAG TERM 345 414002 - 413988 - g 82 -3.4 -5.24129 | overlap 413990 GTGGTCGACAAAAAA GCCGCC GAG AGCGTC ATGCTTGGCGCCGAT PAE0743 413700 - 414839 + | RNA binding protein PAE0744 415050 - 414823 - | hypothetical protein PAE0745 415095 - 415736 + | hypothetical protein PAE0746 416306 - 415842 - | hypothetical protein PAE0748 416615 - 416445 - | hypothetical protein PAE0749 417966 - 416680 - | hypothetical protein TERM 346 417086 - 417054 - G 90 -7.6 -4.73613 | gap 1 CTATTATTAACAAAA CAGCGC-CGACGCCG GCCA CAGCGCCGTGAGCCG CCATTCCCATTAAGA TERM 347 417823 - 417807 - G 80 -5.1 -4.95547 | opp_overlap 417805 417807 417810 TGGATAATAACAAAA GAACAGC TCC GTTGTTC TGTTCTGCTAGTGAT PAE0750 418751 - 417963 - | hypothetical protein TERM 348 419101 - 419087 - H 71 -7.1 -4.07568 | opp_overlap 419086 419087 CCCGTCTCGCCAAAA GGCCT AACTG AGGCC CTTATTTGACACAAC PAE0752 419345 - 419662 + | hypothetical protein TERM 349 420009 - 419999 - g 75 -4.6 -4.78764 | opp_overlap 419999 TAAAGGCAGGAAAAA GCCC AGA GGAC TTCCTTTTATGGGAG TERM 350 420124 - 420134 + G 70 -6.8 -4.14511 | opp_overlap 420116 CAGATGAGACACCCT GCCT ATA AGGC TTTTGACATGGCCTT TERM 351 420249 - 420239 - g 70 -4 -4.70046 | CAGAAAAGGATAAAA CATT GCG AATG TTCACGGCAGATATA TERM 352 420283 - 420268 - g 77 -6.2 -4.61199 | opp_overlap 420270 ACGGCAGATATAAAA GAGTAT TTTA ATACTC TCATAGCGCTGAGGG PAE0753 419659 - 420687 + | H+-transporting ATP synthase subunit C (atpC) PAE0754 420952 - 420689 - | H+-transporting ATP synthase subunit C (atpC) TERM 353 420958 - 420971 + r 76 -5.3 -4.74706 | overlap 420936 TGGATTTCATAAGCG CCTAA TTTT TTAGG TTTTTAAATATTGAC PAE0756 421116 - 420967 - | hypothetical protein PAE0758 421934 - 421335 - | H+-transporting ATP synthase subunit D (atpD) TERM 354 421481 - 421507 + g 74 -3 -4.96501 | TCTGATACTCCCTCA CTCTGTTTAGCA ATG TGTAAAAGAGAG TTTCTTTTTCTGCGA TERM 355 422112 - 422094 - g 77 -3 -5.04385 | overlap 422096 TAGAGGTTGAAAAAA TAGCTGAG GAA CTCGGCAA GAGGCTCTTAGTGGT TERM 356 422298 - 422330 + G 70 -10.7 -2.80438 | overlap 422295 422291 422300 CAGCTACTGTAGTAG TAGTAGGCTATCCTA ACG TAGGGAAGTCTACTA TCATTAACTATTTGA PAE0759 421982 - 422758 + | GTP binding protein, conjectural TERM 357 423019 - 423004 - g 100 -3.2 -5.61881 | opp_overlap 423011, overlap 423006 TTTTAAAAATAAAAA TAGGGA GGCT TCCCAA GGCTATTGCTTCACT TERM 358 423017 - 423006 - g 72 -5.8 -4.43511 | opp_overlap 423011, overlap 423004 TTAAAAATAAAAATA GGGA GGCT TCCC AAGGCTATTGCTTCA PAE0760 422781 - 423251 + | hypothetical protein PAE0762 423907 - 423353 - | hypothetical protein TERM 359 424441 - 424412 - g 76 -10.7 -3.33162 | gap 1, overlap 424415 CAGCGCACCTCAGAA GACGGC-GGAGGAG ATC CTCCTCCAGCCCCC CTCTGGCCTCAATGT TERM 360 424438 - 424415 - g 80 -13.2 -2.53822 | gap 1, overlap 424412 CGCACCTCAGAAGAC GGC-GGAGGAG ATC CTCCTCCAGCC CCCCTCTGGCCTCAA PAE0763 424026 - 425432 + | hypothetical protein PAE0764 426703 - 425414 - | phosphomannomutase (pmm) TERM 361 427569 - 427552 - g 70 -4.9 -4.53303 | CACCCGTATATAAAA CTCGATA TAGA TATCAAG GCCGTTGTTAAAAAC PAE0766 426817 - 427932 + | hypothetical protein PAE0768 428533 - 427934 - | orotidine-5'-monophosphate decarboxylase (pyrF) pyrB 428575 - 429492 + | aspartate carbamoyltransferase catalytic subunit PAE0771 429489 - 430019 + | N-acyltransferase TERM 362 430179 - 430191 + G 81 -4.7 -5.1356 | overlap 430160 CCTGGGGATTATATC CGCAG GCG CCGCG TTTTTATTACTAGGG TERM 363 431340 - 431352 + G 78 -9.1 -3.92869 | GGCCTTGGCAGGTGC GGCCA TGG TGGCC TTTGTGAATACCTCG PAE0772 430063 - 431592 + | hypothetical protein TERM 364 432506 - 432492 - g 72 -10 -3.30443 | GTACGATTATATGAA GAGCCT CCC AGGCTC GGAATCCGCGATATA PAE0773 431596 - 433080 + | hypothetical protein TERM 365 433286 - 433299 + G 85 -6.7 -4.8543 | opp_overlap 433263 433285 TAGACGTATTAATAG CGCTA GTCA TAGCG TTTTTCTCCGCGTTA PAE0776 433267 - 433779 + | hypothetical protein TERM 366 434248 - 434227 - g 80 -11.5 -3.34902 | opp_overlap 434225, overlap 434225 GTGGAGGAGACAATA CGGAGGGCC AAGA GGGCCTCCG CCATGTTGGACAAGT TERM 367 434887 - 434901 + G 78 -5.6 -4.82901 | CCAGAAACGCACCCA GAGACC CAC GGCCTC TTTTTCTACCAAGAC PAE0777 433813 - 435300 + | 7-cyano-7-deazaguanine tRNA-ribosyltransferase PAE0779 436077 - 435361 - | hypothetical protein TERM 368 435617 - 435601 - G 71 -2.2 -5.0133 | overlap 435602 TAGCTCTTCAAAAAA CGACGT CAAAT ACGCCA GCGGTCCCACTATTT TERM 369 435666 - 435677 + g 100 -5.8 -5.60993 | overlap 435655 435654 CCTTTGCCTCCCCCG TGGG CAGG CCCA TTTTTTTATACGCGG PAE0781 436586 - 436074 - | hypothetical protein PAE0782 437817 - 436657 - | hypothetical protein TERM 370 436801 - 436779 - G 77 -8.4 -4.07746 | CTTGTAAAAACAGAA CAGCCTTGAG GGC CTCAATGCCG AATCCCGTAAGCGCC PAE0783 438292 - 437807 - | helix-turn-helix protein TERM 371 438129 - 438147 + g 85 -8.8 -4.55625 | overlap 438122 CGCGGAGCCGCCTTA GGCCTCTG TAG CACAGGCC TTTTCTGCTGTTGCT TERM 372 438566 - 438554 - g 81 -10.5 -3.65201 | GAAGAGTTGTAATAA GCCGC GAG GCGGC AGAGTATGTAAAACA TERM 373 438598 - 438580 - g 95 -12.4 -4.22652 | GCAGAGTATGTAAAA CAGGGACG AAA CGTCCCCG CGAAGTACGTGATAG PAE0786 438301 - 438792 + | hypothetical protein PAE0789 439313 - 439023 - | hypothetical protein TERM 374 439320 - 439333 + H 100 -9.5 -4.87318 | opp_overlap 439320 CACGTCCACTATCAA GGCGG CTCT CCGCC TTTTTAAGTTTTCAG TERM 375 439333 - 439320 - H 71 -9.5 -3.21416 | opp_overlap 439320 CACGTCCACTATCAA GGCGG CTCT CCGCC TTTTTAAGTTTTCAG TERM 376 439527 - 439517 - H 79 -8.2 -4.20783 | ACCGCATCCAATAAA GGCC CAT GGCC TCGGATATATCTAAA PAE0790 439522 - 439764 + | small nuclear ribonucleoprotein homolog (Sm-like) PAE0791 439982 - 440584 + | hypothetical protein TERM 377 440870 - 440853 - g 70 -4.8 -4.51378 | ACGTAGACCAGAAAA CGGGCA GGATAA TACCCG TAGTAGGGCCTCTTG PAE0793 440597 - 441520 + | hypothetical protein PAE0794 441897 - 441514 - | cytidine deaminase PAE0796 441935 - 442873 + | hypothetical protein PAE0797 442904 - 443686 + | short chain dehydrogenase glyA 444967 - 443675 - | serine hydroxymethyltransferase TERM 378 444473 - 444485 + g 75 -5.5 -4.69656 | overlap 444462 CGCGCCTAATATTAT GAGGT TTG GCCTC TTTTCTTCAATAATT PAE0799 445732 - 444998 - | molybdenum cofactor biosynthesis protein (moaC) TERM 379 445159 - 445176 + g 70 -6.3 -4.22749 | gap 1, overlap 445156 TTATAAAAGTCCTCA CCTC-GAC GCT GTCAGAGG TTATTATTTCTATTT TERM 380 445624 - 445647 + g 76 -12.4 -2.50922 | overlap 445620 445622 445618 GATATCTGCTAGCCA CAGTTGCGGC TTTA GCCGCCACTG CTGTATTACATTTTT PAE0800 446058 - 445729 - | hypothetical protein PAE0801 447146 - 446088 - | isopentenyl pyrophosphate isomerase TERM 381 446393 - 446411 + g 81 -10.2 -3.96531 | overlap 446394 CACATATAGATGCGG CGGTGGGG ATC CCCCACCA TTTATACGTCTCTGC TERM 382 446394 - 446410 + g 86 -13.7 -2.97436 | overlap 446393 ACATATAGATGCGGC GGTGGGG ATC CCCCACC ATTTATACGTCTCTG rpl2p 447886 - 447146 - | 50S ribosomal protein L2P TERM 383 447624 - 447634 + g 72 -8.2 -3.81137 | ATATTCCCCGTTTTT GGCG ACG CGCC TTTGCCTATTTCCAC TERM 384 448126 - 448116 - g 93 -2.4 -5.64304 | GAAGAGAATAAAAAA GCCG TTG CGGA GCTAGCAGATATACC rps17E 448017 - 448232 + | 30S ribosomal protein S17e TERM 385 448225 - 448215 - f 100 -8.2 -5.25772 | AAAGCACAAGAAAAA GCCG AGT CGGC GGCGTAGATATGCCC PAE0805 448235 - 448924 + | FKBP-type peptidyl-prolyl cis-trans isomerase PAE0807 448960 - 449568 + | proteasome beta subunit PAE0808 449943 - 449563 - | hypothetical protein PAE0809 450402 - 449983 - | hypothetical protein PAE0810 450869 - 450552 - | mutT/nudix family protein TERM 386 450902 - 450919 + GH 76 -4.1 -4.90002 | overlap 450902 450904 AATAGCCCGTGTTTT TTCTCCT GAGG AGGAGTA TTTTGTTATCTCTTA TERM 387 450904 - 450917 + GH 70 -6.7 -4.04697 | overlap 450902 450902 TAGCCCGTGTTTTTT CTCCT GAGG AGGAG TATTTTGTTATCTCT PAE0811 450855 - 451049 + | hypothetical protein TERM 388 451499 - 451512 + G 72 -8.1 -3.90744 | opp_overlap 451491 AAAATAGGCGGCGCA GTGGC CATC GCCAC TTCTTTCGCAGCCGC TERM 389 451976 - 451951 - g 85 -6.7 -4.84359 | GTATGTGTATAAAAA CGAGGGAGTAG AGCG CGACCCCCGCG AGCAATTTGAATTCA PAE0812 451184 - 452443 + | enolase TERM 390 452568 - 452550 - g 80 -11.8 -3.37198 | overlap 452548 CCGGCATATATAACA TCCTCAAG GCG CTTGAGGA AACGGGCTCTATAGC PAE0813 452474 - 452884 + | molybdenum-pterin-binding protein, conjectural PAE0814 453801 - 452869 - | molybdenum cofactor biosynthesis protein (moaA) TERM 391 454428 - 454440 + G 71 -3.3 -4.79174 | GAATTTGTAGCATTT CTGCC GGC GTCAG TTTTGTTACTTGCGT PAE0815 454218 - 455327 + | serine/threonine protein kinase, putative PAE0816 455337 - 455789 + | hypothetical protein rps2P 455825 - 456451 + | 30S ribosomal protein S2 TERM 392 456466 - 456479 + G 72 -5.9 -4.41633 | opp_overlap 456466 ATGCGCGTTAGAAAG CCGGC GGTT GCTGG TTATTTTTACGAGTC TERM 393 456594 - 456613 + G 73 -11.4 -2.7682 | overlap 456593 AGGCGAGGCTTTGGG CGGCGTGG CGCC TCACGCCG GTTATATGTACTCAG PAE0818 456451 - 457296 + | hypothetical protein PAE0819 458678 - 457293 - | pyruvate kinase PAE0820 460652 - 458748 - | mRNA 3'-end processing factor, conjectural TERM 394 460416 - 460400 - G 72 -4.4 -4.59773 | overlap 460381 CGTTATTTTCAAAAA CGACGT CCTCC ACATCG CTTAACACTTCCCTA TERM 395 461877 - 461867 - g 72 -8.2 -3.75578 | ACACAGAATAGATAA GGCG TCG CGCC AAACGGCAATAGATG PAE0821 460695 - 462119 + | cysteinyl-tRNA synthetase PAE0822 462610 - 462104 - | paREP1 PAE0824 463721 - 462711 - | hypothetical protein PAE0826 467316 - 463759 - | hypothetical protein TERM 396 464302 - 464323 + g 70 -7.3 -4.12532 | gap 1, opp_overlap 464301 AGAAGCCCATTTAAC CTCGGCGGAG ACC CTC-GTCGAG TTTGTATATGCGACC TERM 397 466175 - 466138 - G 72 -7.7 -3.87994 | AGTGACGTTTATAAA CCCCCATCCCCCTAC GTCTAAGT ATAGGGAAGTGGGGG AGACGCTGAACCTCG TERM 398 466547 - 466568 + g 80 -11.5 -3.28712 | opp_overlap 466541 466544, overlap 466548 GACACTATATTATTA GCGCCGTCG CCCT CGACGGCGA TTCTCAAAACGCCGC TERM 399 466548 - 466567 + g 90 -15 -2.57132 | opp_overlap 466541 466544, overlap 466547 ACACTATATTATTAG CGCCGTCG CCCT CGACGGCG ATTCTCAAAACGCCG TERM 400 466939 - 466929 - G 74 -8.2 -3.89412 | opp_overlap 466929, overlap 466930 ATGGAAAGTAGTAAA CGCC TGT GGCG ACAGAAGCCATAGCC PAE0827 467363 - 469285 + | hypothetical protein TERM 401 470248 - 470229 - g 73 -3.6 -4.86133 | gap 1, opp_overlap 470237 TATACAGAGCAAAAA CGACGCATT CTC AACG-GTCG GCAAGTTGAGATTCG PAE0829 469327 - 477306 + | hypothetical protein PAE0830 477366 - 477959 + | hypothetical protein PAE0831 477989 - 478780 + | hypothetical protein TERM 402 478972 - 478956 - g 72 -7.9 -3.93136 | overlap 478957 ACAGTGACTTATAAA GGCCCCA GGA TGGGGGC TGGGGCTAAGACGCG PAE0832 478761 - 479291 + | adenylate cyclase PAE0833 479299 - 481053 + | ATP-dependent DNA ligase PAE0834 481541 - 481041 - | hypothetical protein TERM 403 482316 - 482301 - g 70 -6.8 -4.05788 | CGCGTTTAAAGTAAA CGCGGT GGAC ACCACG GGGGCCGGCGACTGT PAE0835 481582 - 482499 + | sugar kinase, phosphofructokinase PAE0836 482519 - 482860 + | hypothetical protein TERM 404 483052 - 483072 + G 74 -2.6 -5.08824 | gap 1, overlap 483055 GAGCGCTTTCTCTCA GAGCGGCAT CCCG ATGTCG-TC TTTTTTAAATCGAGA PAE0837 482857 - 483534 + | sugar-phosphate nucleotidyl transferase PAE0838 483565 - 484296 + | hypothetical protein TERM 405 484511 - 484497 - g 86 -6.4 -5.04385 | overlap 484500 GAGAGTTTGAAAAAA GAACAC GAA GTGCTC ATGGCCAAGAGGGAG PAE0839 484293 - 484847 + | hypothetical protein PAE0840 485196 - 484816 - | hypothetical protein TERM 406 485581 - 485591 + G 74 -8.2 -3.91412 | opp_overlap 485580, overlap 485584 GCCAGTCAGACATAG GCCC GCC GGGC TTTGTGGCGTATAGT TERM 407 486152 - 486140 - g 71 -3.3 -4.82901 | CGCCCTGTATAAAAA CGGCA GGC TGGCG GGGTACGGCATAGTG PAE0841 485223 - 486284 + | hypothetical protein TERM 408 487130 - 487146 + G 81 -5.8 -4.83615 | gap 1, opp_overlap 487129 GTTATCAATACAACG GCCC-CG ATCC CGAGGGC TTTTTCTCCGAGGTG PAE0843 486748 - 487263 + | paREP1 TERM 409 487459 - 487474 + G 73 -3.9 -4.74706 | TTGTTTGCATAGTGG GGGGC GAGATG GCCTC TTTTTACGTATTCGA PAE0845 487416 - 487568 + | paREP2a TERM 410 487596 - 487586 - g 74 -3.2 -5.00642 | TAACGTATAGAAAAA TGAC ACT GCCA GAGGTTTTTGAACCA PAE0846 487555 - 487734 + | paREP2a TERM 411 487921 - 487908 - f 75 -9.5 -3.53444 | overlap 487871 TGACCCGGGTTCAAA GGCGG AGAT CCGCC GTATACATCCCGGCC TERM 412 488498 - 488458 - g 95 -15.4 -3.07443 | gap 1, overlap 488461 CCAGAGCCCAGGGAA GAACCCCGGT-GGGCTCCC CAGT GGGAGCCCCAGCGGGGGCC CTCCGGCGGGGAGGC TERM 413 488506 - 488461 - g 100 -18.9 -3.68073 | gap 1, overlap 488458 GAGCCCAGGGAAGAA CCCCGGTGGGCTCCCCAGTGGG AGC CCCAGCGGGG-GCCCTCCGGCG GGGAGGCCTGGGGGC TERM 414 488844 - 488818 - g 100 -14.4 -3.54424 | overlap 488819 GCCGAGCCCTCTAAA CTGCCCGGCCTC TGG GAGGCTGGGCAA AGCCCCGGCGCTGGC TERM 415 488843 - 488819 - g 95 -15.7 -2.72511 | overlap 488818 CCGAGCCCTCTAAAC TGCCCGGCCTC TGG GAGGCTGGGCA AAGCCCCGGCGCTGG TERM 416 488991 - 488964 - g 100 -14 -4.07568 | CGGGCGCGTGGAAAA GCCGCCGGACGC ATGG GCGGCCGGAGGC GCGGCGCTTAGCGAA TERM 417 489139 - 489122 - g 100 -14.1 -3.57263 | ACGTGGAGTCTGAAA GCCGCCC CTAC GGGCGGC CGCCCGCCGAGACCG TERM 418 489189 - 489207 + G 74 -10.2 -3.53343 | opp_overlap 489186 CGGCACGCCAAAGCC CTCCGGAG GGC CGCCGGAG TTTGAGAGGGCAGTT TERM 419 489569 - 489556 - g 74 -8.1 -4.09685 | GGGGATCTGCCAAAA GCCTC CTTA GAGGC GCCCAGACCCCATGG TERM 420 489610 - 489598 - g 78 -9.1 -3.86346 | GGAGCTGTCTACAAA GAGCC AGA GGCTC TCCCCGCGAGAGAAG TERM 421 489648 - 489625 - g 100 -17.4 -3.48276 | opp_overlap 489626 489627 CTCCCCGCGAGAGAA GCCGCGCCGG AGAT CCAGCGCGGC GAGGCGGCCAGGCCG TERM 422 490268 - 490246 - g 71 -9 -3.53224 | opp_overlap 490253 490257 GAGGCGTTGCGCAAA TCGCCGGCCG CGG CCTCCGGCGA CCCGGTGCTGGCGGT TERM 423 490595 - 490638 + G 100 -15.9 -3.36823 | gap 1, overlap 490597 AGGGGAGGCTTGCTG GGCGGCGGGC-TGTGGGCCG GGGCG CAGTCCGCCCGCCCGCCGCC TTCCGTTTTGAGGCA TERM 424 490597 - 490643 + G 95 -12.2 -4.07568 | gap 2, overlap 490595 GGGAGGCTTGCTGGG CGGCGGGCTGTGGGCCGGGGCG CAGTC CGCC-CG-CCCGCCGCCTTCCG TTTTGAGGCAACCCC TERM 425 490921 - 490904 - g 72 -6.2 -4.38712 | CCGAGTTTTACAAAA GCCCGG CAGGCT CCAGGC ACTTGGCCCTGGCTG TERM 426 491226 - 491207 - g 86 -9.2 -4.41616 | overlap 491209 AGCTGGCCAAACAAA TAGGCGGG GCCG CCCGCCTG CTGAAGGCCGGGAGG TERM 427 491224 - 491209 - g 88 -11.8 -3.81557 | overlap 491207 CTGGCCAAACAAATA GGCGGG GCCG CCCGCC TGCTGAAGGCCGGGA TERM 428 491394 - 491355 - g 76 -10.7 -3.28712 | gap 1, overlap 491356 GCGCGCGGTGTATAA GGCGCTGACGG-AGGGTC TGAGG GCCCCTCCCATCAGCGCT CTGGACCTCCCAGCC TERM 429 491393 - 491356 - g 84 -14.2 -2.57132 | gap 1, overlap 491355 CGCGCGGTGTATAAG GCGCTGACGG-AGGGTC TGAGG GCCCCTCCCATCAGCGC TCTGGACCTCCCAGC TERM 430 491997 - 491979 - g 73 -11.7 -2.74563 | overlap 491959 GGGAGAGCTGAAGGA GGCCTCC GTTGG GGAGGCC CCCGCCAGAGCCGCG TERM 431 493057 - 492999 - g 79 -9.8 -3.85698 | opp_overlap 493049, overlap 493029 493030 CGCCGCTGGCAGAAA GGCGGGGGCGCCCGGCGGGGCCGTGGAC AAC GCCCTCGGCCGGGCTGCAGGCCCGCCCC CGGCCTCAAACGCTG TERM 432 494401 - 494421 + G 86 -6.7 -5.0133 | overlap 494379 494378 CTAGGCGGCGCCACT CTCGCCGAC AAG GTCGTCGCG TTTTTTGAAAGCCTG PAE0850 488323 - 496680 + | paREP2b PAE0852 496670 - 496855 + | paREP2b PAE0855 497408 - 497136 - | hypothetical protein PAE0857 498328 - 497432 - | hypothetical protein PAE0858 498682 - 498341 - | hypothetical protein TERM 433 498399 - 498419 + g 70 -5.4 -4.41348 | opp_overlap 498399, overlap 498400 TTTTCGCCCGGAAAG TGGTCCAG CGGCT TTGGACCG TTTATTTGAACCCAG PAE0862 499073 - 499384 + | 50S ribosomal protein L14e PAE0865 499381 - 500382 + | H/ACA RNA-protein complex component Cbf5p PAE0866 500455 - 500748 + | hypothetical protein TERM 434 501097 - 501117 + G 83 -12.5 -3.30441 | CGCCGCATGTAGCTA TGGCGGCCG TGG CGGCGGCCA TTATAGCGACTAGTC PAE0867 500745 - 501239 + | hypothetical protein PAE0868 501260 - 501718 + | hypothetical protein PAE0870 501715 - 502647 + | NAD/P oxidoreductase TERM 435 503212 - 503200 - g 70 -4.7 -4.56775 | opp_overlap 503201, overlap 503186 503201 AGCCCCTGGTAAAAA CGCCC CTG GGGCT CGGTTTTATTGGCAA PAE0871 502707 - 503252 + | hypothetical protein PAE0872 503830 - 503249 - | hypothetical protein TERM 436 503945 - 503931 - g 70 -4.2 -4.6526 | ACAAATTGGGAAAAA GTAGAG AGG CACTAC AGGCCCTTTTTAGTA PAE0874 503859 - 504344 + | hypothetical protein PAE0875 505134 - 504334 - | competence damage-inducible protein A TERM 437 504742 - 504720 - G 70 -4.6 -4.52589 | opp_overlap 504720 504721, overlap 504721 504722 CGCTTTCATATAAAA TGCCGGGGGC CGT GCCCACGGGG TTTGGCAAAGGAGTG TERM 438 504740 - 504722 - G 73 -11.6 -2.58418 | opp_overlap 504721 504720, overlap 504721 504720 CTTTCATATAAAATG CCGGGGGC CGT GCCCACGG GGTTTGGCAAAGGAG PAE0876 506023 - 505145 - | hypothetical protein TERM 439 506010 - 505999 - G 72 -5.8 -4.323 | TCGAAATAGCCAAAA TGCC GACA GGCA GTAGCCAGAGCATTA PAE0877 506064 - 506477 + | antioxidant protein, putative TERM 440 506505 - 506495 - g 72 -8.2 -3.78597 | ATTTACGAAGTTAAA GGGC CCT GCCC CGAGCTGGGAGTAAC PAE0878 506474 - 506707 + | hypothetical protein PAE0879 507065 - 506676 - | hypothetical protein TERM 441 506909 - 506922 + g 81 -5.9 -4.76041 | opp_overlap 506909 ACGGCAGGCCAATAA GCCGG GTTT TCGGC TTTTTGCTGAATATA PAE0880 507788 - 507117 - | DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth) TERM 442 507633 - 507645 + g 78 -5.5 -4.83615 | CTCTAAATTCTCCAG CGCTT TAA AGGCG TTTTTGTCGGAGGTG PAE0882 507834 - 508322 + | hypothetical protein PAE0883 508367 - 509152 + | hypothetical protein PAE0885 509526 - 511001 + | thermostable carboxypeptidase PAE0886 511636 - 510998 - | hypothetical protein PAE0887 511677 - 512144 + | phosphopantetheine adenylyltransferase PAE0888 513434 - 512115 - | hypothetical protein TERM 443 512808 - 512796 - G 76 -9.1 -3.77607 | opp_overlap 512804, overlap 512804 AACAAGTTCAGTAAA CGCCA AGA TGGCG GCCTCCAGGCCGGCG PAE0889 513798 - 513451 - | hypothetical protein PAE0890 513918 - 514196 + | hypothetical protein PAE0891 514986 - 514177 - | hypothetical protein TERM 444 514744 - 514729 - G 93 -8.2 -5.00616 | GCTTGCGTTAAAAAA CCCGCC GCGC GGCGAG TGTAAGCCGACGTTA TERM 445 515406 - 515416 + G 72 -4.6 -4.63486 | CGCGCGGCTGATTAC GGCG TAG TGCC TTTTATTAACAGCCT TERM 446 515783 - 515796 + G 86 -9.5 -4.4261 | GGCCGGGAGGGAGTC CGGCG AGCG CGCCG TTTTGATCTTCGCAG PAE0893 515091 - 516035 + | chorismate mutase/prephenate dehydratase (P-protein) TERM 447 516044 - 516072 + T 78 -6.7 -4.56597 | opp_overlap 516036 AATTTAACCAGTTGT CTAGCCTGTTCAA TTA TTGACTCGGCTAG TTTTTCGCCGAAGCC PAE0894 518139 - 516025 - | ATP-dependent, DNA binding helicase TERM 448 516576 - 516560 - G 74 -7.9 -4.0174 | opp_overlap 516548 516560 516562, overlap 516562 AATACAATGTATAAA TAGGCGG ACA CCGCCTC TTTCCGCATTGATTT TERM 449 516574 - 516562 - G 81 -10.5 -3.58879 | opp_overlap 516560 516548 516562, overlap 516560 TACAATGTATAAATA GGCGG ACA CCGCC TCTTTCCGCATTGAT TERM 450 516562 - 516574 + g 76 -10.5 -3.38581 | opp_overlap 516562 516560, overlap 516560 516548 TACAATGTATAAATA GGCGG ACA CCGCC TCTTTCCGCATTGAT TERM 451 517104 - 517092 - G 86 -10.5 -3.94877 | AGTCGGCAATAACAA CCCGC CTC GCGGG GAGGTTAACCCCGGC TERM 452 517130 - 517146 + g 100 -12.3 -4.37092 | CCGGCGGCCAGCGTG GTGGTGG ACA CCACCAC TTTTATCACCCCCCT TERM 453 517587 - 517536 - G 76 -10.8 -3.36273 | gap 1, overlap 517538 CCTCTCTAAGAGGAA CAGGCCGCCAGCTGG-AGGACACGA GCC TCGCTCCCAACCAGCTGGCAACCTC CTCGGCGTTTCCCAC TERM 454 517585 - 517538 - G 85 -13.4 -3.25073 | gap 1, overlap 517536 TCTCTAAGAGGAACA GGCCGCCAGCTGG-AGGACACGA GCC TCGCTCCCAACCAGCTGGCAACC TCCTCGGCGTTTCCC TERM 455 517731 - 517773 + g 71 -3.3 -4.7497 | gap 2, opp_overlap 517725 517722 517723, overlap 517735 CTACAACCAGGCCCA CTGAGCCCAGCCAGCTCGGCC TGT GGCGGAGGAGGCTGT-C-CAG TTTTTCATACGTCAC PAE0894a 518388 - 518173 - | hypothetical protein TERM 456 519765 - 519782 + G 73 -11.3 -2.60615 | opp_overlap 519765, overlap 519764 519762 519767 TACGAGGAGGTGAAA GAGGCAG TGGC CTGCCTC CTCTTTGGCGGAAAT TERM 457 519782 - 519765 - g 85 -11.3 -3.62572 | opp_overlap 519764 519762 519765 519767 TACGAGGAGGTGAAA GAGGCAG TGGC CTGCCTC CTCTTTGGCGGAAAT TERM 458 520583 - 520570 - g 72 -4.5 -4.70659 | overlap 520573 CCGCAGAGGCAAAAA TGAGG CTGT CCCCA ATAGCCGCAGCCGAA PAE0901 518871 - 520913 + | DNA replication licensing factor (mcm) PAE0902 520969 - 521430 + | paREP8 TERM 459 522059 - 522048 - g 74 -2.2 -5.04385 | gap 1, overlap 522049 GACATCGTGAAAAAA CTGGC GTC GCC-G TACCAAGACCCAAGT PAE0903 521829 - 522077 + | hypothetical protein PAE0904 522079 - 522456 + | hypothetical protein PAE0905 522435 - 522773 + | hypothetical protein TERM 460 522863 - 522843 - g 73 -9.1 -3.70068 | GAGGAGAAGCGCAAA TTCCTCAAG GCG CTTGAAGAA GACGAAGAGTTCAGA PAE0906 522813 - 524048 + | paREP7 PAE0908 524507 - 524292 - | hypothetical protein PAE0908a 524593 - 524664 + | hypothetical protein PAE0909 524767 - 525168 + | hypothetical protein TERM 461 525192 - 525213 + F 82 -3.1 -5.54079 | overlap 525185 GGGCTAGACATAGAA GAATTAAAA TATT TTTTGGTTC TTTTTTGATTTTTAA PAE0910 525864 - 526232 + | hypothetical protein TERM 462 526325 - 526370 + GF 85 -7.3 -4.84527 | gap 1, opp_overlap 526325 526332, overlap 526335 526353 ATATCTTGCCTATAA GGACAGAGGGGCG-CTGGGGCC CAC GGCCGCGGGCGCCGCGCTTGCC TTTTTGGTGTCTCAC TERM 463 526335 - 526365 + GF 79 -10.3 -3.4782 | gap 1, opp_overlap 526332 526325, overlap 526325 526353 TATAAGGACAGAGGG GCGCTGGGGCCCAC GGCC GCGGGCGCC-GCGC TTGCCTTTTTGGTGT TERM 464 526478 - 526466 - gf 74 -3.3 -4.89852 | TCACAGCCATAAAAA CCCGT TTG AGGGG TGGCTGATTCTTTTC PAE0910a 526248 - 526544 + | hypothetical protein TERM 465 526754 - 526768 + GF 71 -3.4 -4.76213 | overlap 526755 GGTTTTATTGGTATT TCGCCG GCG TGGCGC TTTTCTTCCATTTAT PAE0913 526519 - 526857 + | hypothetical protein PAE0915 526940 - 529723 + | hypothetical protein TERM 466 530402 - 530417 + G 80 -11.8 -3.37939 | overlap 530407 GGCTTGGAGGCTCTG CGGGGG ACAA CCCCCG TTGCCTTTTCCAATT PAE0916 529749 - 530486 + | hypothetical protein PAE0917 530491 - 530757 + | hypothetical protein PAE0918 531718 - 530729 - | histidinol-phosphate aminotransferase (hisC) PAE0920 532307 - 531732 - | paREP15, putative coiled-coil protein TERM 467 532096 - 532108 + g 74 -3.4 -5.00851 | overlap 532095 TTTGCCTCGTCTATT CTCT GGCTG AGAG TTTTGTTTACTTCGT PAE0922 533753 - 532338 - | hypothetical protein PAE0923 533900 - 534094 + | hypothetical protein TERM 468 534102 - 534156 + G 75 -11.4 -3.03309 | gap 1, opp_overlap 534131 TCTTGTAGCCCAGCC CTCTCCCT-GCTGGCGGAGCTGAAC AGAGAG GTGGAGAGCCGCCAGCTGGGGAGAG TGGTTATTGTTGGAG PAE0924 534081 - 534620 + | hypothetical protein PAE0925 534608 - 534895 + | hypothetical protein TERM 469 535009 - 535021 + G 86 -10.5 -3.90112 | ATAGGGTCAGGTAGG GGGGC CCA GCCCC TTTACTTAGAACACG PAE0926 534874 - 535428 + | hypothetical protein PAE0927 535929 - 535423 - | hypothetical protein PAE0928 536549 - 535953 - | hypothetical protein TERM 470 536435 - 536425 - G 70 -4.6 -4.45485 | overlap 536429 AGTACATTCAGAAAA GCCA CAG CGGC CCTCGCCTCTGCTAA PAE0929 537727 - 536546 - | hypothetical protein TERM 471 536743 - 536701 - G 93 -15.1 -3.1247 | gap 1, opp_overlap 536703 536703, overlap 536703 536705 AGGCTTGATATTTAA CATA-GGCCCCTGTAGTGTT GTAT AACACTACAGGGGCCGCATT TCTAGTGTTGTCAAT TERM 472 536703 - 536741 + g 100 -15.5 -4.08571 | gap 1, opp_overlap 536701 536703 536705, overlap 536703 GCTTGATATTTAACA T-AGGCCCCTGTAGTGTT GTAT AACACTACAGGGGCCGCA TTTCTAGTGTTGTCA TERM 473 536703 - 536740 + g 100 -17.1 -3.0442 | opp_overlap 536701 536703 536705, overlap 536703 GCTTGATATTTAACA TAGGCCCCTGTAGTGTT GTAT AACACTACAGGGGCCGC ATTTCTAGTGTTGTC TERM 474 536741 - 536703 - G 100 -17.7 -3.12327 | gap 1, opp_overlap 536703 536703, overlap 536701 536705 GCTTGATATTTAACA TA-GGCCCCTGTAGTGTT GTAT AACACTACAGGGGCCGCA TTTCTAGTGTTGTCA TERM 475 536738 - 536705 - G 100 -24.1 -3.12142 | opp_overlap 536703 536703, overlap 536703 536701 TTGATATTTAACATA GGCCCCTGTAGTGTT GTAT AACACTACAGGGGCC GCATTTCTAGTGTTG PAE0929a 538089 - 537724 - | hypothetical protein PAE0931 539666 - 538086 - | hypothetical protein TERM 476 538804 - 538816 + g 77 -3.3 -5.03314 | overlap 538800 GGCGGCTTACACCGG CCATG AGG CTTGG TTTTTTGGGCATCAG PAE0932 539775 - 540887 + | hypothetical protein PAE0933 542125 - 540884 - | hypothetical protein TERM 477 540934 - 540920 - G 73 -3.5 -4.82901 | gap 1, overlap 540921 540922 GTGGGGCGAGAAAAA GCCGGC AATT GCCG-C GTCTAGCCCGGGAGG PAE0934 542931 - 542122 - | hypothetical protein TERM 478 542653 - 542665 + g 74 -10.5 -3.26719 | overlap 542648 AGGAGGCGTCGGGAC GGCCG CTA CGGCC TTGGCTATTTGTGAC TERM 479 542996 - 543015 + r 77 -10.6 -3.30124 | opp_overlap 542976 GCCGAGGGGACGGGG GGAGCCCG GAGA CGGGCCCC TTCTGGAACCTCCCG TERM 480 543107 - 543080 - R 95 -11.2 -4.56775 | gap 1, overlap 543106 AGGCGGGGGTAAAAA CCAGC-CGGGGGC GCG GCCCCCAAGCAGG GCCTGTGAGGCCGCG PAE0936 543527 - 543246 - | hypothetical protein TERM 481 543617 - 543633 + H 72 -5.7 -4.46926 | AAAAGTAAGGGGCTG GCCCGCG TAT TGAGGGC TTTTCTGCTGGGCTG PAE0937 543795 - 544376 + | hypothetical protein PAE0938 545309 - 544371 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 482 544716 - 544736 + g 85 -14.1 -2.79796 | overlap 544718 544727 TGGGCTGTATATTTG CACAAAGGC CGC GCCTTTGTG TCTAATAGCCTCGAC TERM 483 544718 - 544734 + g 71 -10.9 -2.94747 | overlap 544716 544727 GGCTGTATATTTGCA CAAAGGC CGC GCCTTTG TGTCTAATAGCCTCG PAE0939 547213 - 545312 - | 2-oxoacid ferredoxin oxidoreductase alpha subunit PAE0941 547626 - 547327 - | hypothetical protein PAE0942 547964 - 547614 - | hypothetical protein TERM 484 547784 - 547760 - G 77 -6.4 -4.65747 | gap 1 TAATGCCCAATAAAA GCGT-GACGGC CACT GCCGTAGACGC CGCAAGCGCCGTGGC PAE0943 548206 - 547964 - | hypothetical protein TERM 485 548041 - 548026 - G 77 -10.4 -3.65991 | ATGCTGCCAAGATAA GCCCTC CGCT GAGGGC GAAGATTAAGGAGAG TERM 486 548246 - 548266 + r 91 -11.1 -4.32402 | overlap 548244 AAGGTTTAAGATCGT CGCTGGCCT CCC AGGCCGGTG TTCTTTTCGTTGCCC PAE0944 549640 - 548441 - | hypothetical protein TERM 487 549083 - 549093 + g 85 -6.8 -4.76041 | CAGTAGGTAGTACGA CTCC TCA GGAG TTTTTAATAGGTATA TERM 488 549177 - 549146 - G 70 -3.9 -4.66535 | gap 2, overlap 549172 AACTTCGAAAATAAA GCCTTCGTGCATTGA GGGA TCAATG-ACGA-GAC CCGCGGTGTTGAAGG PAE0945 549647 - 550147 + | hypothetical protein TERM 489 551121 - 551152 + G 72 -10.1 -3.28791 | GCCCGACGACGGGAC TGTGGAGGGGCTC TATCAC GAGCGCCTCCCCA TTCTGACCACGCAGT PAE0946 550213 - 551253 + | carbamoyl phosphate synthase small subunit carB 551243 - 554317 + | carbamoyl phosphate synthase large subunit TERM 490 554366 - 554353 - g 79 -4.5 -4.9181 | AGAGAAGAGGAAAAA GCCCT TATT AGAGC TGCCGAGAGAATAGG TERM 491 554598 - 554586 - g 86 -6.2 -5.0538 | GGCGATGTTAAAAAA CGGC GGCTT GCCG GTGCCAAAAACCCAA TERM 492 554686 - 554665 - g 72 -5.7 -4.46212 | overlap 554667 CGCGCCATTATAAAA GTCGCCAGC GGTA GCTGGGGGC GCAAAGTCGCCCTCG TERM 493 554933 - 554903 - g 75 -6.9 -4.4009 | overlap 554907 554923 554924 CGCTACCGCAGAAAA TTGACGGCGAGTT GGAAG AACTGGCCGTAAA GGCCGCCAAATCAGT PAE0948 554311 - 555105 + | ribosomal protein S6 modification protein (rimK) PAE0949 556072 - 555092 - | hydrogenase expression/formation protein HypE TERM 494 555838 - 555814 - G 70 -4.1 -4.63932 | opp_overlap 555826, overlap 555816 TAGGCGGCAATAAAA GCGCCACTGAG AGC CACATTGGCTC TATCCCTCTCACTGC TERM 495 556502 - 556486 - g 95 -9.3 -5.05782 | opp_overlap 556499, overlap 556488 AGTGAGTTGAAAAAA GCCGCGG ACT CCGCGCC TCTGGCAATTTACGA TERM 496 556500 - 556488 - g 70 -10.5 -2.77166 | opp_overlap 556499, overlap 556486 TGAGTTGAAAAAAGC CGCGG ACT CCGCG CCTCTGGCAATTTAC PAE0951 556099 - 556974 + | aminotransferase, conjectural TERM 497 557358 - 557344 - g 100 -7.8 -5.26316 | opp_overlap 557344 557342 TGAGGCGATAAAAAA GCTGGG CCC CCCAAC TGTTTATTACACAAA PAE0952 556988 - 557551 + | hypothetical protein TERM 498 557816 - 557795 - g 88 -11.5 -3.74841 | opp_overlap 557794 557807, overlap 557788 ATAAAGAATTTGAAA GCGGCGAAG AGGC CTACGCCGC CTTGCTCAGAGGCGG PAE0953 557545 - 558699 + | putrescine/spermidine binding protein, conjectural PAE0954 560479 - 558872 - | paREP2b TERM 499 559468 - 559484 + g 77 -12.3 -2.71712 | overlap 559467 CCTCCACGTCGCCGC TCAGCGC CAT GCGCTGA ATTTCACGGAGGCCG TERM 500 559533 - 559549 + g 70 -10.9 -2.80796 | overlap 559532 559535 ATGTACTGTCCGTTC CACTTCG CCG CGAAGTG CTTTCCCTCCTCCAG TERM 501 559710 - 559722 + g 76 -9.1 -3.72695 | opp_overlap 559708 559707 TTGGCATAAAATTCG TCCGC GAC GCGGA TTTCGTAACCGCCGT PAE0955 560482 - 560592 + | paREP2a hisH 560623 - 561195 + | imidazole glycerol phosphate synthase subunit HisH PAE0957 561570 - 561175 - | phosphoribosyl-AMP cyclohydrolase PAE0958 561671 - 562717 + | histidinol-phosphate aminotransferase (hisC) PAE0959 562759 - 562860 + | paREP1, degenerate TERM 502 563950 - 563936 - g 70 -5.6 -4.38712 | overlap 563937 CCCAGCGTGACAAAA CTCGCC AAA GGCGAC GTATACGAAGTCTTT hisG 563219 - 564067 + | ATP phosphoribosyltransferase PAE0964 564570 - 565148 + | thymidylate kinase (tmk) PAE0965 565635 - 565141 - | hypothetical protein TERM 503 566065 - 566094 + G 70 -3.5 -4.60143 | gap 1, overlap 566068 TCTCTTTGAAGAGAC TAGGCGGGC-CCTT GGT ACGGCGCCTGCATA TTTTGTCTCATCTCT PAE0966 565682 - 566263 + | hypothetical protein PAE0967 566790 - 566260 - | hypothetical protein PAE0969 567305 - 566787 - | molybdenum cofactor biosynthesis protein (moaB) TERM 504 566889 - 566879 - G 93 -8.2 -4.91109 | opp_overlap 566879 CGGGGAGTAGAAAAA CGGC CTT GCCG TTTATGACCCCTGCA TERM 505 566879 - 566889 + g 74 -8.2 -3.86897 | opp_overlap 566879 CGGGGAGTAGAAAAA CGGC CTT GCCG TTTATGACCCCTGCA TERM 506 567011 - 566996 - G 72 -10.4 -3.34398 | overlap 566994 TTTCCTTCTCAAAGA GAGGCC TCAC GGCCTC AATAGTCACGTCAGT PAE0970 567702 - 567322 - | hypothetical protein PAE0971 567733 - 568215 + | hypothetical protein PAE0972 569418 - 568207 - | adenylosuccinate lyase (purB) TERM 507 568733 - 568713 - G 74 -6 -4.57569 | CGAGGCGCTCAAAAA CGGCGGCC ATTAG GGCCAGCG CCGAGGCCAAGACGG TERM 508 569106 - 569087 - G 78 -10.7 -3.53811 | TTCACCGCCGCCAAA GCCCTCC GTATGA GGAGGGC CCACGCCGTGTCAAT PAE0973 569903 - 569424 - | paREP1 PAE0974 570925 - 569924 - | adenylosuccinate synthetase TERM 509 570840 - 570873 + g 72 -6.8 -4.19238 | gap 2, overlap 570842 GTCCTCACACACAGC TC-CGGCTTATC-CGC CATT GCGAGATACGCCGTGA TTTTCCCCTTACCCG TERM 510 571499 - 571513 + G 83 -12.8 -3.3506 | overlap 571491 TCCTTCACGCTGGCC GCCCGC CTC GCGGGC TTGTCGCCGTTTGAG PAE0976 571256 - 571609 + | hypothetical protein PAE0978 571613 - 571840 + | hypothetical protein PAE0979 571923 - 572147 + | hypothetical protein TERM 511 572463 - 572450 - g 72 -4.5 -4.72986 | gap 1, opp_overlap 572459, overlap 572451 572452 GAGTGGTATGAAAAA GTCGGC TAC GCCG-C GCCTACGACGGGCCT PAE0980 572222 - 572707 + | paREP1 TERM 512 573672 - 573662 - g 90 -6.8 -5.0538 | TCCCAGCTTAAAAAA CTGG GCG CCAG CCTGGACTTCGGCCC TERM 513 574123 - 574103 - g 90 -9.7 -4.34402 | opp_overlap 574103 574105 TCGCCCACATTAAAA GACGTCACC CCC GGCGACATC TCCTTGGCCCTCCCC PAE0983 572963 - 574408 + | hypothetical protein PAE0984 574946 - 574389 - | hypothetical protein PAE0985 577303 - 574916 - | hypothetical protein PAE0986 577658 - 577374 - | phosphoribosyl-ATP pyrophosphohydrolase PAE0988 578761 - 577655 - | histidinol dehydrogenase TERM 514 578537 - 578512 - G 88 -11.1 -4.0896 | AAATTTGCCTCAAAA TCCCGCCGTAG AAAT CCACGGCGGCA GGGGGAGATATCCGG PAE0989 579519 - 578758 - | histidine biosynthesis protein (hisF,cyclase) PAE0990 579577 - 580137 + | imidazoleglycerol-phosphate dehydratase TERM 515 580285 - 580251 - g 74 -7.9 -4.07568 | gap 2 GCGCGGTTTCGAAAA GCCCCG-CTAG-TCCAC GTG GTAGATCTCGACGGGGC TGAGGCAGGAGGGCT PAE0991 580134 - 580823 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) PAE0992 580805 - 580996 + | hypothetical protein PAE0993 581287 - 581724 + | hypothetical protein PAE0995 582028 - 581705 - | hypothetical protein PAE0996 582586 - 582050 - | hypothetical protein PAE0998 584212 - 582758 - | hypothetical protein TERM 516 583967 - 583948 - G 71 -9.3 -3.53012 | TGCCCCCCGGCGAAA TGACGCC CTCTTC GGCGTCA ATCGCGGCGACGCCG TERM 517 584774 - 584784 + G 81 -8.2 -4.42806 | CGTCCCGGCTAGAGT GGCC AGA GGCC TTTATTTAGAGGTGG PAE0999 584454 - 586655 + | hypothetical protein TERM 518 586684 - 586706 + G 79 -4 -5.11937 | overlap 586688 CCCTTTTTCAGGATG GGCCTGGCCC TGG GGGTTATGTC TTTTTTCCACTTATT TERM 519 586945 - 586959 + G 71 -2.8 -4.81083 | GGGGTGCGGAGCAGG GTAAAG TCG CTTTTC TTTTTCGTGCTTGGG PAE1000 586648 - 587178 + | hypothetical protein PAE1001 587319 - 587762 + | hypothetical protein PAE1002 587789 - 589672 + | acylamino-acid-releasing enzyme, conjectural PAE1003 589665 - 590918 + | glutamyl-tRNA(Gln) amidotransferase subunit D TERM 520 591277 - 591247 - g 72 -10.5 -2.9914 | opp_overlap 591247 TAGGTGGTACAGATA CGAGACAAACCTA GTGGG CAGGATTGTCTCG TTTGCAGACAAATTG TERM 521 591247 - 591277 + G 74 -9.8 -3.53761 | opp_overlap 591247 TAGGTGGTACAGATA CGAGACAAACCT AGTGGGC AGGATTGTCTCG TTTGCAGACAAATTG TERM 522 591341 - 591326 - g 82 -3.2 -5.28176 | TGCAGGTATAAAAAA CTGGGT TACG ACACAG ACGACTTGATAAAAA PAE1004 590915 - 591445 + | hypothetical protein TERM 523 591652 - 591674 + T 74 -3.3 -4.9792 | overlap 591654 CAGATTTACATTTGG CGGACTCCG AATAG CGCAGTCAG TTTTTATATCAACTC TERM 524 592664 - 592678 + T 84 -8.5 -4.58395 | opp_overlap 592664 592663 TGTCTTGTGAATAAG GCGGC GTTCA GCCGC TTTTTAGGCCGTGGC PAE1008 593575 - 593021 - | hypothetical protein PAE1009 593592 - 593858 + | hypothetical protein TERM 525 593999 - 594009 + G 81 -8.2 -4.42765 | opp_overlap 593998 ATCCTGGGCATAACG GGGC TGG GCCC TTTGATTTTTTCCGG TERM 526 594070 - 594082 + G 77 -3.4 -5.03715 | CGTGTTGGCGATTTC CACA GCGTA TGTG TTTTTTAACGGTACT PAE1011 593897 - 594475 + | hypothetical protein PAE1012 595180 - 594437 - | hypothetical protein PAE1013 596184 - 595180 - | polyprenyl synthetase TERM 527 595778 - 595804 + g 81 -10.9 -3.65425 | opp_overlap 595773 GCCTTAATCACCTTA GCCACCTCTCT GGCGA AGAGAGTTGGC TTTGGCGTGTCTAAA TERM 528 596345 - 596358 + H 75 -9.5 -3.53012 | opp_overlap 596354 596355 CGCCCCCTGCCTACC GCGCC AAAA GGCGC TTTGCGCGGGACAAC PAE1015 596479 - 596616 + | hypothetical protein PAE1016 596687 - 597478 + | hypothetical protein PAE1017 597501 - 597911 + | hypothetical protein PAE1018 598009 - 598341 + | hypothetical protein PAE1019 598522 - 598328 - | hypothetical protein TERM 529 598529 - 598516 - G 75 -5.2 -4.64844 | CGTACACACAGAAAA CGGC CATCTC GCCG CCCGCTTTGCGAAAC PAE1020 598536 - 598766 + | hypothetical protein TERM 530 598973 - 598957 - g 88 -10.9 -4.11371 | opp_overlap 598955 598957 GAATATGGGCGAAAA GGCCTTT CTT AAAGGCC TATTAAATATCTTGG TERM 531 598957 - 598973 + G 74 -10.9 -3.15583 | opp_overlap 598957, overlap 598955 GAATATGGGCGAAAA GGCCTTT CTT AAAGGCC TATTAAATATCTTGG PAE1022 598946 - 599557 + | thiamine-monophosphate kinase part 2, authentic frameshift PAE1024 599536 - 599793 + | thiamine-monophosphate kinase part 1, authentic frameshift TERM 532 599841 - 599855 + G 70 -10 -3.16492 | overlap 599839 GGGCGGTATATTTTG TTGCGG TAA CCGCAA TATTAATAGCTATAG PAE1026 599819 - 600523 + | hypothetical protein PAE1027 601191 - 600520 - | ribose 5-phosphate isomerase TERM 533 600726 - 600745 + g 76 -12.2 -2.53449 | overlap 600725 600723 CCCCATCTTGGCGTA GTTTGGCG ACGC CGCCAAAC CTCTTCTCAACCTCT PAE1028 601595 - 601212 - | hypothetical protein TERM 534 601938 - 601906 - g 91 -11.9 -4.11692 | TATTTATTTTCAAAA GCCCCCAGACGGGCA CGT TGCACGTCTCGGCGC TAGGGGGGGCCGCCT TERM 535 602304 - 602324 + G 71 -9.6 -3.54424 | opp_overlap 602301 GCGGCAATAGTAGTG GGGGGGCC GAAGA GGCCCCAC TTTGAGAAAGTGACC TERM 536 602927 - 602915 - g 83 -5.5 -5.08601 | overlap 602916 CGATTCGAAGAAAAA CGCCA GGC TGGCA GGGCATTTGCTCGAC TERM 537 603438 - 603415 - g 72 -6 -4.34402 | gap 1, overlap 603425 CCTGGGAGAGCAAAA GGGCACGAGAC CTA GTCTCA-ACCC TGGCCAGAGAGCTAG PAE1029 601692 - 603560 + | aldehyde ferredoxin oxidoreductase (aor) PAE1031 604504 - 605109 + | hypothetical protein PAE1032 605091 - 605519 + | hypothetical protein PAE1033 605503 - 605901 + | hypothetical protein PAE1034 606098 - 605904 - | hypothetical protein TERM 538 605977 - 606013 + g 100 -17.3 -4.12942 | opp_overlap 605981, overlap 605979 605980 TTTTTAGCCCTTTCT AACACCTCGCGGAGGGT TTT ACCCTCTGCGAGGAGTA TTTTCACCCCTTTGC TERM 539 605979 - 606011 + g 100 -19.9 -3.65832 | opp_overlap 605981, overlap 605977 605980 TTTAGCCCTTTCTAA CACCTCGCGGAGGGT TTT ACCCTCTGCGAGGAG TATTTTCACCCCTTT TERM 540 606009 - 605981 - G 100 -18.9 -3.01924 | opp_overlap 605980 605979 605977 TAGCCCTTTCTAACA CCTCGCGGAGGGT TTT ACCCTCTGCGAGG AGTATTTTCACCCCT PAE1035 606138 - 606962 + | hypothetical protein PAE1036 606944 - 607762 + | hypothetical protein PAE1037 608002 - 607895 - | hypothetical protein PAE1038 609001 - 608030 - | D-3-phosphoglycerate dehydrogenase (serA) TERM 541 608241 - 608227 - G 81 -9.2 -4.07568 | CGGCGCCGGCCAAAA CCCCGG CCT CCAGGG CCTCAATAAGGGCGT TERM 542 608693 - 608717 + g 70 -6.4 -4.20368 | gap 1, opp_overlap 608694, overlap 608694 GTCTACTAAGACATA AGGCGT-GTGG GCCA CCACCACGCCC TTTCTCTTGGCGTAC TERM 543 608716 - 608694 - G 77 -9.9 -3.70722 | gap 1, opp_overlap 608694 608693 TCTACTAAGACATAA GGCGT-GTGG GCCA CCACCACGCC CTTTCTCTTGGCGTA TERM 544 609490 - 609469 - g 72 -8.7 -3.83502 | opp_overlap 609473, overlap 609481 CAGGCCTATAGTAAA CACGGCG ATAATCGG CGCCGTG GTGAAGGCAACGGGC PAE1040 609092 - 609619 + | pyruvate ferredoxin oxidoreductase gamma subunit (porG) PAE1041 609616 - 609924 + | pyruvate ferredoxin oxidoreductase delta subunit (porD) PAE1042 609924 - 611102 + | pyruvate ferredoxin oxidoreductase alpha subunit (porA) PAE1043 611099 - 612043 + | pyruvate ferredoxin oxidoreductase beta subunit (porB) PAE1044 612137 - 614017 + | hypothetical protein PAE1046 614064 - 614405 + | hypothetical protein PAE1048 614588 - 616003 + | hypothetical protein TERM 545 616162 - 616172 + G 72 -8.2 -3.72576 | overlap 616155 TATCCATTTCTTGAG GCCC TCG GGGC TTTAATCGCGGGGAG TERM 546 616574 - 616590 + G 71 -2.9 -4.81551 | opp_overlap 616565 616566 AGACAAGGCCGGTGG CGCCC GCCGGAG GGGTG TTTTTGCTGTCCGTC PAE1049 616024 - 617235 + | hypothetical protein PAE1051 617461 - 618456 + | cysteine synthase PAE1054 619403 - 618699 - | hypothetical protein PAE1056 620182 - 619442 - | thiF/moeB/hesA family protein TERM 547 620641 - 620624 - g 74 -2.6 -5.09173 | GAAGAGGTGAAAAAA GTGGCG AGGGGG CGCTAC CGCGTTCCCGCTCTG TERM 548 620652 - 620671 + G 72 -8.6 -3.85698 | gap 1 GCTACCGCGTTCCCG CTCTGAGGG AGG CCCTC-GAG TTTGTCGCCGAGAGA PAE1058 620378 - 621067 + | glycerophosphoryl diester phosphodiesterase TERM 549 621684 - 621667 - f 74 -3.5 -5.00616 | opp_overlap 621667 CCTGGCTTTAAAAAA TTAAACC GTTA AGTTTAA TAGTATAAGCCCTCC PAE1060 621719 - 621994 + | partial recF-like protein TERM 550 622090 - 622071 - f 77 -9.2 -3.86194 | opp_overlap 622070, overlap 622072 AAGTTTCTCCACAAA GGGGGCTC GGTA GAGCCCCG GTATGTGGAAATCAC TERM 551 622089 - 622072 - f 79 -12.7 -2.91395 | opp_overlap 622070, overlap 622071 AGTTTCTCCACAAAG GGGGCTC GGTA GAGCCCC GGTATGTGGAAATCA TERM 552 622851 - 622868 + GF 73 -4 -4.81163 | overlap 622852 TATTTCCAGTGGTGG GGGCCG AGCTCG CGGCCA TTTTCTTAATCTTTA TERM 553 623378 - 623395 + GF 81 -12.7 -3.14132 | AAAGCCCCCCCGTCC CTCCCCC AGCT GGGGGAG TTCCTCCGCGGAGCG TERM 554 623721 - 623736 + GF 70 -4.7 -4.39828 | opp_overlap 623721 CCAGGGCGTATCAAA TAGGC GGCGCG GCCTA TTTTCTCCACATATT PAE1064 622637 - 623998 + | sulfonate transport permease protein, putative PAE1066 623959 - 624723 + | taurine(sulfate) transport ATP-binding protein, putative PAE1067 624781 - 626889 + | hypothetical protein TERM 555 626893 - 626906 + G 91 -3.1 -5.53436 | CGTTTTAGATAAGGC GAGGA ATTT TCTTC TTTTTTCTCTTCTCT TERM 556 626978 - 626992 + G 79 -4.2 -5.02439 | GTCTGGCGCACAGCA CTCTAC GCA GTGGGG TTTTTCTCATTCTAT TERM 557 627183 - 627193 + G 75 -4.6 -4.87665 | overlap 627178 GGGTTGGGAGGCTGG CGTC GCT GGCG TTTTTCTGGCTCGGC PAE1068 626870 - 627409 + | hypothetical protein PAE1069 627921 - 627475 - | hypothetical protein PAE1072 628290 - 627997 - | translation initiation factor IF-1A PAE1073 628934 - 628341 - | hypothetical protein PAE1074 629439 - 628885 - | hypothetical protein PAE1075 629615 - 630046 + | paREP2b PAE1076 630056 - 630787 + | hypothetical protein PAE1077 630955 - 633108 + | hypothetical protein PAE1078 633095 - 633655 + | hypothetical protein PAE1079 633688 - 636009 + | hypothetical protein TERM 558 636272 - 636284 + G 73 -9.1 -3.57561 | CTCGGCTTGCTGTGG GCCTC TTG GAGGC TTTGGAGAGTTAAAG PAE1081 636089 - 636517 + | hypothetical protein PAE1082 637401 - 636514 - | hypothetical protein PAE1085 638178 - 637411 - | hypothetical protein TERM 559 638035 - 638025 - GR 71 -2.4 -4.89477 | overlap 638026 TGGCGAAGAACAAAA CGGG CGC CCCT GCCCTTGCCGCCGTC TERM 560 638097 - 638075 - GR 70 -6.2 -4.1822 | overlap 638095 GTTGAGGCGAAGAAA GTCTTCCCCA CTC CGAGGAAGCC CTCAATTAGGACCAC PAE1086 638492 - 638148 - | hypothetical protein TERM 561 638624 - 638614 - R 73 -2.4 -5.12068 | GAGAGGGAATAAAAA TGGC ACG GCCC CTAATAATACAGCTT PAE1087 639257 - 638625 - | hypothetical protein TERM 562 640048 - 640036 - g 75 -4.7 -4.81306 | GGCAAGAAAAAACAA CAGCC AGA GGCAG AGGTGCAGTCTGTAA PAE1089 639505 - 641625 + | hypothetical protein TERM 563 641631 - 641641 + G 70 -4.6 -4.47161 | TTATCGGTAGTTTTG GGCT AAA GGCC TCTTTTTTCTTGTTT TERM 564 641851 - 641864 + G 71 -9.5 -3.53031 | GCCTAGCGCCGTGTT CGGGC CTCT GCCCG TTGATTTGAGCTGGG PAE1092 641603 - 642157 + | hypothetical protein TERM 565 642386 - 642376 - f 71 -6.8 -4.12188 | overlap 642377 CGACGATGTGGAAAA CTCC CGC GGAG ACGCAGGTAGGTGAT TERM 566 643690 - 643677 - g 75 -4.5 -4.87665 | TGCGAGGTATAAAAA GACTG TAAA CAGCC TCGCCCAAATAGCAA PAE1095 642760 - 644886 + | hypothetical protein PAE1096 644903 - 645397 + | hypothetical protein TERM 567 645995 - 646008 + F 70 -5.2 -4.42653 | CTATTGCCCGGAGAC GCGG GCTGGA CCGC TTTTCTAACTCCCCT TERM 568 646558 - 646569 + G 72 -5.8 -4.41241 | overlap 646568 TGTGGAGGATCACTA CGGA CACT TCCG TTTTCTAGCGCTTTA PAE1099 646298 - 646990 + | integral membrane protein (rhomboid related), putative PAE1101 647086 - 647733 + | hypothetical protein TERM 569 648255 - 648278 + G 79 -10.4 -3.76224 | gap 1, opp_overlap 648253 CATTTTCATAGTATC TAC-CGCCAAG AGA CTTGGCGCGTA TTTACTAACTGCGGA PAE1102 647743 - 648504 + | hypothetical protein PAE1103 648844 - 648584 - | hypothetical protein TERM 570 648978 - 648961 - H 87 -10.5 -4.07568 | CGGCCGCTGTGAAAA CGCCCCC TCCA AGGGGCG CACAATTTAAACACA PAE1105 649009 - 649368 + | hypothetical protein PAE1106 649365 - 649853 + | hypothetical protein TERM 571 650248 - 650238 - g 74 -2.4 -5.13473 | ATGAGATTGAAAAAA TGGG CAA CCCC CTGTACCTGGCCCGG leuS 649883 - 652720 + | leucyl-tRNA synthetase TERM 572 652736 - 652748 + T 70 -4.8 -4.40804 | ATTAACTGGCTAGAT GAGG CAAAA CCTC TTTTCTAAACTCGTC PAE1108 656408 - 652722 - | reverse gyrase TERM 573 656256 - 656266 + g 74 -8.2 -3.93237 | overlap 656244 CAACGCCTTCCTCTT CCGC AAG GCGG TTATTACTTGTTTAA TERM 574 657094 - 657073 - g 79 -3.7 -5.10064 | gap 1 TGGAAGATATAAAAA GTGTCCC-AC CCA GTCGGGATAC AACGCGGAGTACACA TERM 575 657194 - 657181 - g 79 -2.3 -5.28826 | AAAGTCTATAAAAAA CGAGG GGGA CTTCG TGGCGCTCTTAGAGG PAE1109 656846 - 657235 + | hypothetical protein PAE1111 657763 - 657215 - | hypothetical protein TERM 576 657434 - 657449 + g 90 -9 -4.57569 | opp_overlap 657421 657422 657446 AAGGCCTAGCTCCTC CGCCTT GAGC AAGGCG TTTTTAACGGCCTCG TERM 577 657563 - 657580 + g 75 -6.9 -4.3739 | overlap 657524 657550 GACGGCGACGTCGCC CACGGGC ACGG GGCCGTG TTTTCTCACCCACTC TERM 578 659429 - 659405 - g 75 -5.5 -4.6526 | overlap 659413 AGAAACTGTCAAAAA CGCGAGAAGCG GCG CGCCGCCCGTG GGACTAAACTCTAAA PAE1112 657894 - 659552 + | hypothetical protein PAE1113 659634 - 661295 + | DNA-directed DNA polymerase (B2) PAE1115 661334 - 661771 + | hypothetical protein PAE1116 661861 - 661748 - | hypothetical protein PAE1118 662175 - 661906 - | paREP1, authentic frameshift TERM 579 661994 - 661982 - G 80 -5.5 -4.98857 | opp_overlap 661984 661989, overlap 661984 AGGCAATTATAAAAA TCGGC TGG GCCAA CCCTCTTGTCCTCTC TERM 580 662068 - 662113 + g 70 -7.3 -4.03234 | opp_overlap 662061 662080 662098, overlap 662069 GTAATCCACGGCGAT GGCCGCCAGCAAGGCTCTCCA CGCC TGAAACGCCCTGCCGGCGGCG TTTCTGTAAAGCCCC TERM 581 662069 - 662112 + g 72 -10.8 -3.01726 | opp_overlap 662061 662080 662098, overlap 662068 TAATCCACGGCGATG GCCGCCAGCAAGGCTCTCCA CGCC TGAAACGCCCTGCCGGCGGC GTTTCTGTAAAGCCC PAE1120 663546 - 662248 - | hypothetical protein TERM 582 662785 - 662797 + g 70 -10.5 -2.74461 | overlap 662784 CTGCGCCGGTATGTG CGCCC TCT GGGCG ATTTCGGAGTAAGTA TERM 583 663751 - 663738 - H 73 -9.5 -3.33261 | opp_overlap 663740 GCGCAAGGCTCATAA CCGGG CGGT CCCGG GTTCAAATCCCGGCG TERM 584 664195 - 664216 + G 72 -5.1 -4.46267 | CGTCGAGGCGGCAAT GGGGAGG CTGAGGTA CCTCCTC TTTTACTTGGCTTAT TERM 585 664431 - 664419 - g 71 -3.3 -4.85599 | opp_overlap 664419 GTTATTGTAGAAAAA TGGCG GCT CGCTA TGATATAGCAATATG PAE1124 664031 - 664729 + | integral membrane protein (rhomboid related), putative PAE1126 664742 - 665059 + | hypothetical protein TERM 586 665583 - 665571 - g 73 -4.1 -4.82901 | TCGGGGCTATAAAAA CATCG GCG CGATA CGTCCTGGCTAAAAG TERM 587 666089 - 666069 - g 74 -2.5 -5.03715 | ACCACCTCCAAAAAA TCGCAGA GTTCTGG TCGGCGA ATAAGACTGAGCTAA PAE1127 665192 - 666112 + | hypothetical protein PAE1128 666651 - 666109 - | hypothetical protein PAE1130 667077 - 666676 - | hypothetical protein PAE1131 667150 - 668316 + | flavoprotein reductase, conjectural PAE1135 669352 - 668660 - | hypothetical protein TERM 588 669447 - 669435 - R 74 -5.5 -4.63486 | ATTCGCCTAACAAAA GCCCT CTC AAGGC GTCGTGGGGCAATTA TERM 589 669708 - 669732 + r 77 -6.9 -4.49389 | TGGGATGCGTTGGGA GCGCGGCAGGC CGG GCCGTCAGCGC TTTTAATTCTCACCT PAE1139 670506 - 669742 - | diphthine synthase PAE1140 670549 - 671028 + | hypothetical protein PAE1141 671679 - 671029 - | hypothetical protein PAE1142 672479 - 671709 - | tRNA pseudouridine synthase A TERM 590 671875 - 671907 + g 90 -7.6 -5.02074 | gap 1, overlap 671872 AGCACTAAGCCTTCA GCCGGGGCGCTGGGG ACGG CGCCAG-GCCTGGGC TTTTTTAACAAATCG PAE1143 672506 - 673195 + | hypothetical protein PAE1144 673219 - 673488 + | hypothetical protein PAE1145 674453 - 673599 - | 3-hydroxyisobutyrate dehydrogenase family protein TERM 591 673768 - 673781 + g 70 -5.2 -4.30978 | overlap 673767 GCCGCTTTGAAACCC GGCG TCAAGT CGCC TTTTAATAACTTAGG TERM 592 674935 - 674951 + G 78 -7.9 -4.36914 | overlap 674936 ATACACCTTAGTGAG GGGGCAG AAA CTGCCCA TTTTCTCCGGCACAG TERM 593 674936 - 674950 + G 77 -11.4 -3.21934 | overlap 674935 TACACCTTAGTGAGG GGGCAG AAA CTGCCC ATTTTCTCCGGCACA PAE1146 674498 - 675901 + | V-type ATP synthase subunit B TERM 594 676376 - 676352 - g 75 -11.4 -2.92157 | opp_overlap 676351 676339 CACGAAGTGTACATA GCCTTGAGGG GATCT CCCACAAGGC CTTACATTACGTTTA PAE1147 676103 - 676624 + | hypothetical protein TERM 595 676700 - 676667 - f 70 -5.2 -4.53303 | gap 1, opp_overlap 676689 GAGTTTTACAGAAAA GCGGTGAATAGCGGG GAGAT CTCGCCAGTC-CCGC CCGGGCGTTTATATC PAE1151 676919 - 677299 + | hypothetical protein PAE1153 677616 - 677296 - | hypothetical protein PAE1155 678004 - 677597 - | hypothetical protein PAE1156 678807 - 678001 - | hypothetical protein TERM 596 678853 - 678836 - H 78 -4.9 -5.0133 | gap 1 GAGGGGGTTAAAAAA GCTGTGAG CCC CTCA-AGC AGTAACATACAATGC PAE1158 679224 - 679526 + | hypothetical protein PAE1159 679939 - 679601 - | hypothetical protein PAE1161 680018 - 680320 + | hypothetical protein TERM 597 680443 - 680425 - g 75 -5.2 -4.67038 | overlap 680426 680428 TCTTTAAAATTAAAA TGAGGGAG GAG CTCCCCTA CGGCGCTGGGGACTT PAE1162 680340 - 680669 + | hypothetical protein PAE1163 681734 - 680655 - | hypothetical protein PAE1164 681801 - 682859 + | hypothetical protein TERM 598 683163 - 683137 - g 100 -14.4 -4.13767 | opp_overlap 683152 CCGCCGATGTTAAAA TACGCCCAGCGC AGA GCCCCGGGCGTA TCGGTGGCAGGGGCT TERM 599 683188 - 683207 + G 83 -10 -4.07687 | gap 1, opp_overlap 683202 GGGGCTAGTTTCAAG GCCCCG-CT GAG AGACGGGGC TTTTGACGCCGCCGT PAE1165 682909 - 683460 + | hypothetical protein TERM 600 684184 - 684151 - g 76 -8.1 -4.25104 | gap 1, overlap 684174 CGCGTTTTACGAAAA CCCCCT-GCCGCTAGT GGA ACAAGTGGCCAGGAGG CTAGGCGTGAGGAGG PAE1166 683603 - 684319 + | hypothetical protein PAE1168 684959 - 684300 - | ABC transporter ATP-binding protein, putative PAE1171 686163 - 685018 - | hypothetical protein TERM 601 686819 - 686806 - g 72 -5.9 -4.4078 | opp_overlap 686806 CCTTTTTAATGAAAA GGAGG TATA CCCCC TGTCTGTCAATCGCA PAE1173 686193 - 687320 + | hypothetical protein PAE1175 687342 - 688247 + | 2-hydroxyacid dehydrogenase PAE1176 688263 - 688592 + | hypothetical protein TERM 602 688640 - 688667 + F 70 -9.8 -3.06796 | overlap 688642 AGTTGTTCTGAGCCT CATGGAGCCGGA TGTG TCCAGCGCCATG TTGCGTAGAGTAGAG PAE1177 688641 - 688883 + | hypothetical protein PAE1179 689147 - 688944 - | paREP2b PAE1180 692819 - 689199 - | paREP2b TERM 603 689712 - 689748 + g 72 -8.6 -3.84183 | GCCCTCCTTCAGCCC GACCTGCGCCAAAGCC TCAAC GGCCTTGGCGTATGCC TCTTTTGTAATACGG TERM 604 689826 - 689838 + g 71 -9.1 -3.5394 | CTCCTTCAGACCCCT CGCCT TTA AGGCG TTTACGGCGGCGTTT TERM 605 692286 - 692310 + g 83 -6.3 -4.98255 | opp_overlap 692286, overlap 692287 TCTTTGCTCATACCA CGCCTTAGAGG CCT CCTCAAGGGCC TTTTTGTAGTTGGCG TERM 606 692287 - 692309 + g 77 -9.8 -3.5823 | opp_overlap 692286, overlap 692286 CTTTGCTCATACCAC GCCTTAGAGG CCT CCTCAAGGGC CTTTTTGTAGTTGGC TERM 607 692652 - 692667 + g 73 -11.8 -2.57564 | overlap 692651 CCAGCTTATTAGCCC GGCCGC CGCG GCGGCC ATTATGAACCAATGC TERM 608 692890 - 692833 - H 71 -10.4 -2.71791 | overlap 692832 ACTGCCCTCTCAAAG GCCCCCTCCCTCGCCAGCCGCCGTGC TGATGT ACAAGGCAGTTGTGGAGGGAGAGGGG AAGATTAGGCCATGA TERM 609 693339 - 693315 - g 82 -9.3 -4.25104 | gap 1 CGTGTGTTATCAAAA GCGGAGCGCA GAGGCA TGCGC-CCGC GCCATAGAGGAGTAC PAE1181 692902 - 693822 + | paREP2a TERM 610 694170 - 694157 - g 70 -3.7 -4.66609 | CAGGCCATTGAAAAA GCCAC TAGG GAGGC GAAGCTCAATCTCGT rps5p 693806 - 694462 + | 30S ribosomal protein S5P rpl30p 694459 - 694995 + | 50S ribosomal protein L30P PAE1184 695931 - 694975 - | galactose-1-phosphate uridylyltransferase TERM 611 695423 - 695433 + g 72 -6.8 -4.18494 | overlap 695411 ATGCGGCAGTGGAGG CACG AGC CGTG TTTTACATACCACTC TERM 612 695847 - 695868 + g 88 -12.3 -3.59262 | gap 1, opp_overlap 695840 695839, overlap 695840 GGCAGAAGGGGCATG CGCCCTCTGG TTG CCAG-GGGCG TTTAAGCCTGTGGGG PAE1185 697006 - 695921 - | galactokinase TERM 613 695972 - 695985 + g 73 -9.5 -3.57825 | GGCCCACCACTTCAC GGCGC TTGA GCGCC TTCCTATTTTCTCGG TERM 614 696771 - 696754 - G 73 -9.1 -3.64822 | opp_overlap 696769 AGCCCCTGAGGTAAA CGCCGTG TTTC CACAGCG CCAGGACTGCCGCCT PAE1186 697587 - 696991 - | hypothetical protein PAE1188 697951 - 697721 - | hypothetical protein TERM 615 698878 - 698889 + G 81 -7.2 -4.60797 | opp_overlap 698878 698877 TTAGATTTTAAAGAC GGCG TTCT CGCC TTTTCTCTGTCAAGC PAE1189 698047 - 699759 + | acylamino-acid-releasing enzyme, conjectural PAE1191 700714 - 699818 - | paREP2b TERM 616 700386 - 700404 + g 90 -13.2 -3.53091 | GCCTCCAAGTCGCCA TTCAGCGC CAT GCGCTGAA TTTCACGGAGGCCCT PAE1192 700953 - 700843 - | hypothetical protein PAE1194 701499 - 700969 - | hypothetical protein PAE1195 701485 - 701787 + | hypothetical protein PAE1197 702585 - 702031 - | hypothetical protein TERM 617 702288 - 702269 - G 83 -6.4 -4.98531 | CCTGCAAAGGAAAAA CTTGGCTT CCAC AAGCCCAG CACTACCCCGATGGC PAE1199 703394 - 702708 - | ABC transporter ATP-binding protein, putative PAE1200 703901 - 703671 - | hypothetical protein PAE1201 704053 - 704322 + | paREP2a PAE1203 704430 - 705305 + | spermidine synthase TERM 618 705770 - 705751 - g 70 -4.2 -4.59109 | gap 1, overlap 705752 GAGAGGCTTGAAAAA CGCGGCTAC ATA GT-GCCGCC CATTATTGAAGAGGG PAE1204 705298 - 706509 + | pantothenate metabolism flavoprotein (dfp) PAE1205 707163 - 706465 - | hypothetical protein TERM 619 706938 - 706963 + g 81 -6.9 -4.72272 | gap 1 TTATCCCTTTCCTCG CCGCGTCGACTA AAA TA-TCGGCGTGG TTTTTAATGAGGCCC TERM 620 707321 - 707337 + H 87 -11.5 -3.9978 | opp_overlap 707313 707310, overlap 707312 ATAACCACGGGGTCT CCCGGCG CCC CGCTGGG TTATTCATTTTCTGG TERM 621 707903 - 707885 - g 77 -12.4 -2.7464 | overlap 707884 AATGGAGGCGGAAAT CCCCAAGG CCC CCTCGGGG GAGGAGGGCAATAAC PAE1208 707583 - 708014 + | hypothetical protein TERM 622 708677 - 708693 + G 74 -7.9 -4.06419 | overlap 708678 AGGCCGCTGTACGTG GCTGGGG TAC CCCCAGA TTATTTCTCGGCCAC TERM 623 708678 - 708692 + G 75 -11.4 -3.0353 | overlap 708677 GGCCGCTGTACGTGG CTGGGG TAC CCCCAG ATTATTTCTCGGCCA PAE1209 708014 - 709420 + | 4-alpha-glucanotransferase (malQ) PAE1211 710389 - 709547 - | paREP2a PAE1213 710756 - 710379 - | paREP2a TERM 624 711258 - 711243 - g 73 -11.8 -2.57564 | overlap 711242 GCATTGGTTCATAAT GGCCGC CGCG GCGGCC GGGCTGATGGCGTGG TERM 625 711624 - 711600 - g 83 -6.3 -4.98255 | opp_overlap 711600, overlap 711601 CGCCAACTACAAAAA GGCCCTTGAGG AGG CCTCTAAGGCG TGGTATGAGCAAAGA TERM 626 711623 - 711601 - g 77 -9.8 -3.5823 | opp_overlap 711600, overlap 711600 GCCAACTACAAAAAG GCCCTTGAGG AGG CCTCTAAGGC GTGGTATGAGCAAAG PAE1214 710914 - 711942 + | paREP2b TERM 627 713750 - 713740 - g 77 -8.2 -4.07568 | opp_overlap 713744 CGGCTCTCGCGAAAA GGCG GAG CGCC TGGCCTCTATCTTAA PAE1215 711986 - 714982 + | paREP2b PAE1216 715653 - 715015 - | ribonuclease HII (rnhB) TERM 628 715177 - 715191 + g 77 -2.8 -5.03145 | GGGGTATCCGCTGCC GAAATC GCC GACTTC TTTTTTAAGCAATTG PAE1218 716328 - 715849 - | hypothetical protein PAE1219 717124 - 716321 - | NH(3)-dependent NAD(+) synthetase TERM 629 716533 - 716555 + g 75 -4.9 -4.73448 | gap 2, overlap 716533 716534 CCGCCGTGTGGCCTT G-CCAG-AGCC TTG GGCTGCTGGGC TTTTTAGCTATGTCT PAE1220 718328 - 717144 - | acetyl-CoA C-acetyltransferase PAE1222 719442 - 718372 - | ABC transporter ATP-binding protein, putative PAE1223 719499 - 720617 + | hypothetical protein PAE1224 720607 - 721098 + | hypothetical protein TERM 630 721334 - 721318 - g 73 -11.5 -2.78935 | AGATGCGCTAGTAGA CGCCGCA AAA CGCGGCG TAGACGTATACGTAG PAE1226 721121 - 722173 + | DNA endonuclease, conjectural PAE1227 722189 - 722578 + | hypothetical protein TERM 631 722941 - 722925 - T 70 -9.3 -3.30124 | opp_overlap 722919 TCCGATGCCCTACAA CGCGGCG GGA CGCCGTG CTGGGATCTCTTAGT PAE1231 723651 - 722971 - | deoxyribose-phosphate aldolase PAE1232 723707 - 723994 + | acylphosphatase, putative PAE1234 724509 - 724081 - | hypothetical protein PAE1236 724720 - 724499 - | hypothetical protein TERM 632 724685 - 724695 + g 75 -5.4 -4.59109 | AAAGAATTGTAAGGG CTCT TCC AGAG TTTTTAGAAACTCTA PAE1238a 724962 - 724771 - | hypothetical protein PAE1239 725011 - 725157 + | hypothetical protein TERM 633 725822 - 725834 + G 71 -10.5 -2.95459 | opp_overlap 725811, overlap 725821 AGTAGTCGGCGACAG GGCGG TTG CCGCC ATTTATCGAATTACT PAE1240 725307 - 726110 + | ribosomal protein S6 modification protein (rimK) PAE1241 726446 - 726111 - | hypothetical protein PAE1242 726737 - 726447 - | hypothetical protein PAE1244 727532 - 726753 - | translation initiation factor aIF-2B subunit, conjectural TERM 634 727001 - 727016 + g 70 -4.6 -4.50627 | overlap 727003 TGGCCGTTGCCAGTA GGGGGA GGGA TCCCAC TTTATTTACTGCGTA TERM 635 727682 - 727706 + G 88 -10.7 -4.09685 | CGGTTTACAGGCAGG GGGAGGTCGTG CTA CACGACATCTC TTTTACGGCATCAAA TERM 636 727753 - 727768 + G 75 -5.4 -4.65747 | gap 1, opp_overlap 727750 GCCGGGCCAAACGGC GCG-GGT AAG ACCACGC TTTTCTTGGCAATTC PAE1246 727642 - 728370 + | manganese ABC transporter ATP-binding protein PAE1247 728357 - 729232 + | manganese transport permease protein TERM 637 729365 - 729355 - f 76 -8.2 -4.15044 | opp_overlap 729345, overlap 729356 GCTGGTTTTAACAAA GCCC CGC GGGC GCCCGGCAGGGGTTG TERM 638 729376 - 729356 - f 73 -10.3 -3.08812 | opp_overlap 729345, overlap 729355 CTGGTTTTAACAAAG CCCCGCGGG CGC CCGGCAGGG GTTGGTTGAAATTAT PAE1251 729511 - 730701 + | hypothetical protein PAE1252 730871 - 731941 + | hypothetical protein PAE1257 732350 - 732874 + | hypothetical protein PAE1260 733169 - 733588 + | hypothetical protein PAE1261 733591 - 734160 + | hypothetical protein TERM 639 734501 - 734486 - g 71 -9 -3.53224 | TATCTTCGTGCCAAA GCAGTG TAAT CACTGC GAAAATGCGCCGTGT PAE1263 734235 - 734879 + | molybdopterin oxidoreductase, iron-sulfur binding subunit PAE1264 734876 - 735985 + | hypothetical protein TERM 640 739042 - 739068 + G 76 -10.8 -3.28712 | opp_overlap 739039 TTAAGGTAGAGACTC CAGTAGGCGCTT TCG AGGCGCCTGCCG TTGTCGAGCCAGCCG PAE1265 735978 - 739499 + | molybdopterin oxidoreductase, molybdopterin binding subunit PAE1266 739549 - 740151 + | hypothetical protein PAE1267 741437 - 740220 - | hypothetical protein TERM 641 741502 - 741479 - H 77 -10.4 -3.31726 | gap 1, opp_overlap 741486 741501, overlap 741477 741483 741486 GTTTCCTACACAATA CAGACAAGCCA GCT TGGCTTG-CTG TGGCGTACGCCCGGC TERM 642 741499 - 741483 - H 77 -10.9 -3.17443 | opp_overlap 741486, overlap 741479 741477 741486 CCTACACAATACAGA CAAGCCA GCT TGGCTTG CTGTGGCGTACGCCC TERM 643 741557 - 741576 + H 70 -10 -3.06261 | gap 1 GGGAGGCGGTTATGA CGCCG-TGG GTA CCAACGGCG TATGTCTATAAATAT TERM 644 742118 - 742103 - g 70 -4.6 -4.56597 | opp_overlap 742105, overlap 742105 GTGGTTTTTGAAAAA GAGCCC AGGG GGGCTT ATTTTAACGAATACA TERM 645 742105 - 742116 + G 72 -7.2 -4.17762 | opp_overlap 742105 742103 GGTTTTTGAAAAAGA GCCC AGGG GGGC TTATTTTAACGAATA PAE1269 741680 - 742891 + | hypothetical protein PAE1270 743886 - 742897 - | hypothetical protein PAE1271 745212 - 744202 - | hypothetical protein TERM 646 747578 - 747562 - g 71 -2.2 -4.89393 | gap 1 GAAATTGGAGAAAAA GCC-GCC AATA GGCTAGC TGATGCCCTGACAGG PAE1272 745666 - 747879 + | trehalose-6-phosphate synthase PAE1273 749078 - 747870 - | glycosyl transferase, conjectural TERM 647 747915 - 747929 + g 74 -6.4 -4.47328 | GGCGAGTTTGACGGC GTTGAG CCC CTCAGC TTTTCTCCTCGCCTT PAE1275 749671 - 749075 - | hypothetical protein TERM 648 750419 - 750439 + G 81 -9.7 -3.95787 | ATAGAAACTGACTAT GTCGCTAGG ACA CTTGGCGAC TTTCTAGATCTAATA TERM 649 750569 - 750553 - g 90 -8 -4.96848 | TTGGCTAGAGAAAAA CTTCGG GCTGA CCGAAG TTGCCGCTGCGTTGA PAE1277 750002 - 750667 + | hypothetical protein TERM 650 751477 - 751463 - g 100 -5.6 -5.74122 | overlap 751465 TAGTATACAAAAAAA CAGTGG AGG CCGCTG GGAACGACCGCGACA TERM 651 751491 - 751465 - g 70 -5 -4.50122 | overlap 751463 GTATACAAAAAAACA GTGGAGGCCGCT GGG AACGACCGCGAC ATTCATTTACTAATG PAE1278 750664 - 751869 + | trehalose synthase TERM 652 753086 - 753062 - g 76 -9.3 -3.74693 | GGCTACGGGATTAAA CGCCCTTGTAG AGC CTAAAAGGACG TGGCGTGGGGATATA PAE1279 752766 - 753476 + | hypothetical protein PAE1280 753489 - 754403 + | hypothetical protein TERM 653 754543 - 754531 - g 71 -3.4 -4.74801 | opp_overlap 754531, overlap 754519 TAACCTCATTAAAAA CTTC GACGG GAAG TTGTCTAAAGAGGCC PAE1281 754400 - 754696 + | glycolate oxidase subunit, putative PAE1282 755836 - 754676 - | glycolate oxidase subunit glcF TERM 654 754835 - 754816 - G 78 -7.8 -4.4078 | opp_overlap 754817, overlap 754817 GGCTTTCAATTAAAA CGCCGTCT GGGG AGACGGCT TTCACCTCATCCCTC TERM 655 754817 - 754834 + g 85 -11.3 -3.62275 | opp_overlap 754816 754817 GCTTTCAATTAAAAC GCCGTCT GGGG AGACGGC TTTCACCTCATCCCT TERM 656 754834 - 754817 - G 77 -11.3 -3.24146 | opp_overlap 754817, overlap 754816 GCTTTCAATTAAAAC GCCGTCT GGGG AGACGGC TTTCACCTCATCCCT TERM 657 755301 - 755271 - G 100 -12.6 -4.56133 | CCGCAACAACTAAAA CGCGGAACCACTAC CTC GTAGCCGTTCCACG TAAGTACTCTAATTG PAE1284 756816 - 755833 - | glycolate oxidase subunit glcE TERM 658 756232 - 756213 - G 91 -11.4 -4.08651 | gap 1 ACCTCAAGTAAAGAA CGCCGTCGG CCT CCG-CGGCG CCGGCGACATGTAGC TERM 659 756781 - 756795 + g 72 -10 -3.31322 | ATTTGCCTCTTTCAT GAGCTC CAC GAGCTC TTCTACAGACTTGGG PAE1286 758240 - 756813 - | glycolate oxidase subunit glcD TERM 660 756850 - 756862 + g 77 -3.3 -5.13741 | overlap 756851 TTCATGAGCCCCTTG GGGTC GAA GACCG TTTTTATTGCCTTCA TERM 661 758683 - 758656 - g 70 -4.7 -4.57569 | opp_overlap 758659, overlap 758660 CCATCCGTTGAAAAA CCCAGGCCTTG AAATCA CAGGGCCCTGG TATCCAATGAGCAGG PAE1287 758297 - 760738 + | malate synthase (glcB) TERM 662 761015 - 761042 + G 73 -11.9 -2.82516 | opp_overlap 760993 TTACGGCCCGCCTAG CCGCCGTGGGG GCTAAA CTCCTCGGCGG TGTAGTGCTGAGGCC TERM 663 761581 - 761564 - g 86 -4.1 -5.40474 | AGCTTGCGAAAAAAA TAGCGCT GGGG AGGGCTA AAAAACTGGCGTCAC PAE1288 760768 - 761697 + | hypothetical protein TERM 664 761979 - 761969 - g 71 -3.2 -4.77036 | overlap 761972 CGTGATGAGTAAAAA CAAC GTC GCTG AGGAGACGGGGCTTC TERM 665 761987 - 761972 - g 70 -4.6 -4.49314 | overlap 761969 GATGAGTAAAAACAA CGTCGC TGAG GAGACG GGGCTTCGCAAGAGG PAE1289 761694 - 762833 + | hypothetical protein PAE1290 763589 - 762837 - | hypothetical protein TERM 666 763662 - 763676 + r 72 -8.6 -3.77808 | opp_overlap 763662 763661 763659 AGGGGGCGTAAATAG CTGCTA CTC TAGCAG TTGTCTTCTGATAAC PAE1292 763796 - 763665 - | hypothetical protein TERM 667 764853 - 764832 - g 74 -8.1 -4.07568 | opp_overlap 764840 764844, overlap 764844 CCGCGTGGGGCAAAA TTTTCAAGC TAAC GCCTGAAAA TCTCAAGGTTTATAG TERM 668 765306 - 765316 + G 75 -4.6 -4.86133 | ACGCAGCCGCCATCT GGGG AAT TCCC TTTTTAATATATCTC PAE1293 763997 - 765454 + | hypothetical protein PAE1295 766226 - 765456 - | hypothetical protein TERM 669 765877 - 765899 + g 75 -5.4 -4.72486 | CTTGGAATTCTCCTA GCCGGGGCGA ACT TCACGCTGGC TTTTTCAAATTTGTC PAE1296 767215 - 766253 - | dipeptide transport ATP-binding protein PAE1297 768180 - 767212 - | dipeptide transport ATP-binding protein TERM 670 768018 - 768041 + g 77 -8.2 -4.11216 | opp_overlap 768018 GCGGCTGAATTAAAC GCGTTATTGC CCTA GTAGTAACGC TTTTACCGCTGCCAG PAE1298 769241 - 768177 - | dipeptide ABC transporter, permease protein PAE1299 770241 - 769243 - | dipeptide ABC transporter, permease protein TERM 671 769564 - 769576 + g 70 -6.3 -4.17556 | ATCCGCACCTAATGT CTCAA CTG TTGAG TTTCTTACAAATCTG TERM 672 769827 - 769856 + g 70 -10.1 -3.13191 | opp_overlap 769826 769827, overlap 769825 769831 ACACGCCTATTAAAG CCAAGATACGCAC TGCG GTGTCTATCTTGG TGTCTCTCTTATAAG TERM 673 769943 - 769924 - G 75 -5 -4.84582 | AAAAAATATAGAAAA TAACGCAA GTTG TAGCGTTA CAGAAAACCTTGTAG PAE1300 772461 - 770248 - | dipeptide binding protein TERM 674 771363 - 771340 - G 78 -7.4 -4.4017 | opp_overlap 771340, overlap 771341 GTAATTTCTATAAAA CGCTGGGTTG ATAT CAACCCAACC TGTGCTCTCTTCAAC TERM 675 771362 - 771341 - G 74 -10.9 -3.2362 | opp_overlap 771340, overlap 771340 TAATTTCTATAAAAC GCTGGGTTG ATAT CAACCCAAC CTGTGCTCTCTTCAA TERM 676 772535 - 772549 + r 75 -2.8 -5.26247 | TTATAATAGTTAATT CACTAA AAG TAAGTG TTTTATTTCTTTTCA PAE1302 775602 - 772552 - | tricorn protease TERM 677 773065 - 773047 - G 81 -7.3 -4.62783 | overlap 773049 TAGCGATTTGAAAAA CTCGGCG TAGCC CGCCGGG CCCATGTCGGGAATG TERM 678 773562 - 773575 + g 72 -6.7 -4.25873 | GCGTGCCTATACGGC TGAGC AAAG GCTCA TATTTTTTATAAACG TERM 679 773734 - 773761 + g 85 -7 -4.84761 | gap 1 AACGCCGCTTTTCCT GCCCGGGTCTCTG GAC TGGAGATC-GGGC TTTTTCTCAACGTCT TERM 680 774123 - 774103 - G 93 -11.8 -4.20516 | TTTGTACTGAACAAA CGGCGAGG TGTCC CCCCGCCG CAAAACTGCAAGATA TERM 681 774587 - 774600 + g 84 -8.1 -4.61633 | ACCGCGCCGTCGTAA GTGGC CACC GCCAC TTTTTCGCCGTCTGT TERM 682 775374 - 775340 - G 72 -7.1 -4.28762 | gap 1 ACAACTCTAGTAAAA GGCGTGCCGAAATAGG TAAT CCT-CTTCGGCTCTCC CCCCTCTGAGGGGAC TERM 683 775732 - 775745 + G 73 -9.5 -3.63837 | TGCGCTGTCTTTACT GGCCG CGGC CGGCC TTCTTCACACGTTGT TERM 684 775960 - 775984 + G 72 -4.3 -4.62984 | gap 1 GGTAATAGCCCTCGT GGCCATTGAG GCGAAG CTCAG-GGCC TTTTGTATATACTGC PAE1303 775643 - 776047 + | hypothetical protein PAE1304 776482 - 776039 - | hypothetical protein PAE1306 777755 - 776589 - | hypothetical protein TERM 685 777243 - 777228 - G 70 -10.4 -3.14132 | CCCCCTGGCCACTAA GGCCAG CTCC CTGGCC CTCTCAGCCAGCTCG TERM 686 777463 - 777452 - G 72 -7.2 -4.2558 | CAGCCGCGATTAAAA CGCC TGAG GGCG CCCAAGAGGCCAGAA PAE1307 778626 - 777805 - | hypothetical protein PAE1309 779984 - 778647 - | hypothetical protein TERM 687 779809 - 779797 - G 81 -9.1 -4.07885 | GAGGCCTTCCCAAAA CCCAC CAC GTGGG CCCTCCCCCTCACCG TERM 688 780217 - 780200 - gH 88 -11.3 -3.73402 | ACAGCCTTTATGAAA TGGCGAG GAGG CTCGCCA CGTTGAAAAATTTTG PAE1310 780025 - 780393 + | hypothetical protein PAE1311 780366 - 780608 + | hypothetical protein PAE1313 780617 - 780775 + | hypothetical protein PAE1315 780817 - 781239 + | hypothetical protein PAE1316 781252 - 781509 + | hypothetical protein PAE1318 781767 - 781498 - | hypothetical protein TERM 689 781619 - 781601 - G 90 -10.2 -4.4017 | overlap 781590 GCAACGGCGAGAAAA TCGGCGGG CCC CGCGCCGA AGCAAATCGGCACTA PAE1319 782022 - 782357 + | hypothetical protein TERM 690 782484 - 782445 - g 85 -7.2 -4.78107 | overlap 782446 GAGGATTATTAAAAA CCTCGACGACTATTTAAT GCGC ATTAAAGAGGCGGCGAGA GAGCTTGACCCCAAA PAE1320 782380 - 782718 + | hypothetical protein PAE1321 783824 - 782751 - | multiple sugar-binding transport ATP-binding PAE1322 784654 - 783821 - | multiple sugar transport permease PAE1323 785529 - 784651 - | multiple sugar transport permease PAE1324 786839 - 785526 - | multiple sugar binding protein TERM 691 786197 - 786211 + g 81 -10 -3.91352 | opp_overlap 786167 786197 CGTCGCCAGAGGCAA TTGGCG TGA CGCCAA TTTCCTTAAGCCTCT PAE1325 786934 - 786815 - | hypothetical protein PAE1326 787362 - 787487 + | hypothetical protein PAE1327 787474 - 788154 + | uracil-DNA glycosylase TERM 692 788901 - 788884 - g 72 -9.8 -3.29144 | opp_overlap 788885 TTATGCCCGTCATAA CCGCGG CCCTCT CCGCGG CGCTTCTAGGCGAAT PAE1328 788151 - 788990 + | hypothetical protein TERM 693 789294 - 789308 + G 82 -9.2 -4.16943 | CAATTTTCTAGAGCC GGGGGT AAA GCCCCC TTTTAAAGTCTGCGG PAE1329 789004 - 789447 + | hypothetical protein PAE1330 789498 - 791075 + | alpha-isopropylmalate/homocitrate synthase family transferase PAE1331 792498 - 791086 - | iron-sulfur protein TERM 694 792389 - 792408 + g 79 -2.1 -5.28826 | TAGCTATACTTATCA GCTGG AGACTCAATA CCAGC TTTTTTCTGAAGTTT PAE1332 793267 - 792839 - | hypothetical protein ubiA 794103 - 793267 - | prenyltransferase TERM 695 794019 - 794001 - G 83 -5.2 -5.1615 | CCAAGAGGGAAAAAA GACGGC TGTCAAC GCCGCC CCCGCCGTAAATATA PAE1334 794672 - 794139 - | respiratory chain protein TERM 696 794228 - 794213 - GR 77 -10.4 -3.3506 | opp_overlap 794213 TTGAAATTTTTATAA GCGCTG TCCC CAGCGC TTCGTACAGCGGCAT TERM 697 794213 - 794228 + gr 74 -10.4 -3.14211 | opp_overlap 794213 TTGAAATTTTTATAA GCGCTG TCCC CAGCGC TTCGTACAGCGGCAT TERM 698 794370 - 794356 - GR 80 -5.6 -4.90869 | overlap 794360 ACCAGCAACCAAAAA GGCAGG GCG CTTGCC GCCCATAAGATGCCC PAE1336 794826 - 794632 - | respiratory chain protein TERM 699 794738 - 794725 - GR 81 -5.9 -4.87626 | CCCCAACACTAAAAA CGCCG AGAA CAGCG GAGGGTCAAAGGCAG PAE1337 797225 - 794823 - | cytochrome C oxidase subunit I /III TERM 700 795681 - 795657 - G 81 -7 -4.65933 | overlap 795659 TACGCCTAAAATAAA GGGCCACGGG TTTGG CTCGTGGCGC GGGTGGACTAACGGC TERM 701 796528 - 796506 - G 100 -14.8 -3.55548 | overlap 796508 GAAGATGTGTTGAAA CAGCCTCGGG TCG CCCGAGGCGG CGGGATCCCCGGGAA TERM 702 796526 - 796508 - G 100 -16 -3.35224 | overlap 796506 AGATGTGTTGAAACA GCCTCGGG TCG CCCGAGGC GGCGGGATCCCCGGG PAE1338 797674 - 797225 - | cytochrome C oxidase subunit II PAE1340 797900 - 797661 - | respiratory chain protein (soxI homolog) TERM 703 797986 - 797997 + H 75 -3 -5.1104 | opp_overlap 797986, overlap 797978 AGAATCGCATAAGTA TATC TATA GATA TTTTTATGTATATTT TERM 704 798119 - 798131 + G 72 -7.7 -3.86015 | CGCCTTTATCTCCGC GCTAG CCA CTAGC TTTGTAGGAGGGCTA TERM 705 798679 - 798711 + G 77 -9.7 -3.66497 | CTTGGATTATCCACC TCGTCGCCGCGGCGC TCA GCGTCGCGCTGGCCA TTTACGCCTTTCTTA PAE1344 798072 - 798929 + | respiratory chain protein TERM 706 799532 - 799567 + G 73 -9 -3.66178 | gap 1, opp_overlap 799508 799507, overlap 799508 799508 799507 GCCGCGGGGGCAGGC CTCGGGGCTGTGTCGGG CAT TTTG-CACGGCTCCGAG TTTGGAATTGCCGCG TERM 707 800233 - 800222 - g 74 -2.2 -5.09173 | gap 1, opp_overlap 800223 800224 800226, overlap 800223 CAATATTTGAAAAAA GTGGG AGG CCC-C TTCTCTCTTAAAGGG PAE1345 798929 - 800872 + | hypothetical protein PAE1347 800977 - 801540 + | hypothetical protein PAE1349 801542 - 802102 + | Rieske iron sulfur protein (parR) TERM 708 802825 - 802841 + G 90 -15.1 -2.62184 | CAGGGCATACTCTAC GGCGGCG TCT CGCCGCC TCCTGTGAAAAACGA PAE1350 802099 - 803340 + | cytochrome b/b6 TERM 709 803390 - 803371 - g 80 -11.4 -3.28712 | gap 1, opp_overlap 803374 803378 803380 CTCTCGCCTGGATAA CGGC-CGGC TTC GCCGTGCCG GCGATGTTGGTAGTC TERM 710 803374 - 803400 + G 76 -12.2 -2.64107 | opp_overlap 803371, overlap 803378 803380 TCGCCTGGATAACGG CCGGCTTCGCCG TGC CGGCGATGTTGG TAGTCTACGCCTTTC TERM 711 803378 - 803396 + G 70 -10.2 -3.24747 | opp_overlap 803371, overlap 803374 803380 CTGGATAACGGCCGG CTTCGCCG TGC CGGCGATG TTGGTAGTCTACGCC TERM 712 803380 - 803394 + G 77 -11.4 -3.18849 | opp_overlap 803371, overlap 803378 803374 GGATAACGGCCGGCT TCGCCG TGC CGGCGA TGTTGGTAGTCTACG PAE1351 803343 - 803672 + | hypothetical protein PAE1352 803665 - 803922 + | hypothetical protein PAE1355 804233 - 804709 + | cytochrome C oxidase subunit II TERM 713 805789 - 805805 + G 76 -10.8 -3.2963 | overlap 805782 805781 805802 TATCCTCTTCGGCAT CGCCGG CTTCT CCGGCG TTGTAAACGCCTCCT PAE1357 804755 - 806428 + | cytochrome C oxidase subunit I TERM 714 806594 - 806623 + G 82 -9.3 -4.24123 | gap 1 GGTCCCCGTGTGTTA TTTGCC-CGGGAGG GAG CCTCCTGCGGCGGA TTTTGAGCTTATTAA PAE1358 806460 - 807083 + | senC-like protein PAE1359 807083 - 807448 + | hypothetical protein TERM 715 807706 - 807761 + G 86 -12.5 -3.56568 | opp_overlap 807698, overlap 807757 ATTAAACGGCACTTT CGCCCGTAGGTGTGTTCTCTGCGGC ATGGAC GCGGCAGAGGCCGTGCATATGGGCG TTTCCGCCGTAGTTG PAE1360 807518 - 808201 + | hypothetical protein TERM 716 808252 - 808269 + GF 74 -2.7 -5.00616 | gap 1, overlap 808253 CTCCTCGCCGCGGGC G-GGATAG GGA CTGTCCTC TTTTTTGCCACGCCG PAE1361 808204 - 808818 + | hypothetical protein TERM 717 809468 - 809488 + GF 100 -13.3 -4.22652 | opp_overlap 809461 809463 GTTAAAAACTGCAAG GCTGTGGAC AAC GTCCACGGC TTTTACGTAATGTAC TERM 718 809809 - 809825 + GF 88 -11.5 -3.84406 | opp_overlap 809809 CAGATTCGCCATAGA CTCGGCC ATG GGCCGGG TTATTATAGTCGACG PAE1362 808772 - 809926 + | nosD-like protein TERM 719 810248 - 810231 - g 79 -4.1 -5.03145 | TAAGTTTTTAAAAAA GAGAGGT TCTG AGCTCTC CTCCGGAATGGCGGC PAE1363 809911 - 810570 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative TERM 720 810997 - 810983 - g 74 -7.8 -4.08767 | overlap 810985 GGCATCTCCTCAAAA GAGAGG GCC CCCCTC GTCGCCATTGTTGTG TERM 721 810997 - 810985 - g 73 -9.1 -3.6422 | overlap 810983 CATCTCCTCAAAAGA GAGGG CCC CCCTC GTCGCCATTGTTGTG PAE1364 810560 - 811306 + | hypothetical protein PAE1365 811303 - 811650 + | hypothetical protein PAE1366 811790 - 812236 + | hypothetical protein TERM 722 812659 - 812671 + G 77 -6.9 -4.44974 | overlap 812669 CCTTCTGGCGGGTTT GGCGT CTA GCGCC TTTTATGGGCTTTAC PAE1367 812240 - 812866 + | hypothetical protein TERM 723 812954 - 812964 + G 72 -4.6 -4.64992 | AGCCCGTGCTGGCAG CCCT CTG GGGG TTTCTGTTTTTTAAA PAE1368 812845 - 813054 + | hypothetical protein TERM 724 813143 - 813165 + G 71 -3.3 -4.79075 | TACGGCATTGCCGTA GGCGCCG TGAAGTTGC CCGCGCC TTTTGTTGAGTTTTT TERM 725 813426 - 813407 - g 76 -9.2 -3.72576 | GCTTTGTTGACGAAA CTCGCCCT CCCA AGGGCGCG GGCAGTGGAATTGCC PAE1369 813080 - 813883 + | hypothetical protein TERM 726 815355 - 815343 - gT 72 -9.1 -3.53012 | CGCCTTCCTCCTAAA CGCAG AGC CTGCG AAAATAGAGGCTGAG PAE1372 817262 - 816378 - | hypothetical protein PAE1371 814072 - 816438 + | hypothetical protein PAE1373 817667 - 817263 - | translation initiation factor IF-2 subunit beta PAE1375 818249 - 817701 - | protein associated with acetyl-CoA C-acyltransferase PAE1377 819429 - 818251 - | acetyl-CoA acetyltransferase PAE1378 820715 - 819483 - | acyl-CoA dehydrogenase TERM 727 820906 - 820919 + G 93 -2.3 -5.72254 | GCCTGAGGTTGAAAT AAGGC CGTC GCCTC TTTTTTCTTATTTAG TERM 728 820969 - 820954 - g 74 -7.5 -4.08394 | opp_overlap 820954 820952 820950 ACAGGCTGGGGAAAA CGCCG GGCGCA CGGCG TATATATATTTTGGC TERM 729 821355 - 821340 - g 74 -7.5 -4.07687 | overlap 821350 821351 AGCCGCTGGCTAAAA GGCGG ATTAAG CCGCC AAAAGTGGCGTACTC PAE1379 820820 - 822553 + | long-chain-fatty-acid--CoA ligase TERM 730 823074 - 823086 + G 70 -10.5 -2.73364 | opp_overlap 823074 AATCCGTTGCATAGA GCCGC CGA GCGGC TAATTGAAATGGGGA TERM 731 823086 - 823074 - g 71 -10.5 -2.87463 | opp_overlap 823074 AATCCGTTGCATAGA GCCGC CGA GCGGC TAATTGAAATGGGGA TERM 732 823367 - 823389 + G 74 -9.8 -3.54424 | opp_overlap 823364 823361 823352, overlap 823359 GCAAGCACAGGAGGT GTTGGAGGCC AAC GCCCTCCAGC TTTCAGAGGCTGAGG PAE1381 822576 - 823520 + | aldo-keto reductase family protein TERM 733 824091 - 824077 - g 85 -2.7 -5.42862 | overlap 824078 AGACTGTCAAAAAAA CGGCG GAGTA CGCCT CAAAGCTGGGGAAGC TERM 734 825297 - 825311 + G 77 -11.4 -3.14344 | opp_overlap 825286 825285 825296 ATACCGGCTAGAGAG GCCGAG AGG CTCGGC TTAGTACACAAGGTA TERM 735 825340 - 825361 + G 70 -6.5 -4.25283 | opp_overlap 825342 TAGTTCCGCCGGATA GACTTGAGC AAGA GCTCAGGGC TTTTGCTAACAAACT TERM 736 825393 - 825375 - g 70 -5.9 -4.15044 | overlap 825376 825386 825387 GCTTTTGCTAACAAA CTGGCGG AAAAG CCGCCAT TGGCGCTGGCCATGG PAE1383 823575 - 825563 + | 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase TERM 737 825638 - 825625 - g 82 -2.3 -5.43866 | CAACTTTTAAAAAAA CTCTC AGAG GCGAG GGGCCCGTCCGGCTT TERM 738 826378 - 826390 + G 75 -4.7 -4.82901 | opp_overlap 826374 AAGGTATTAGACGGG GGGCG CGG CGGCC TTTTTATAGCCCACC PAE1385 825595 - 826683 + | aminopeptidase PAE1386 827292 - 826684 - | phosphate transport system regulator, conjectural PAE1387 827864 - 827373 - | paREP1 PAE1388 828600 - 827896 - | branched-chain amino acid transport ATP-binding protein TERM 739 828187 - 828204 + g 74 -3.3 -5.01497 | gap 1, overlap 828185 CATTTGTTGCTCCCC GCC-GCTC ATA GTGCCGGC TTTTTGTCTCCTCCT PAE1389 829328 - 828591 - | branched-chain amino acid transport ATP-binding protein PAE1390 830278 - 829316 - | branched-chain amino acid transport permease protein PAE1391 831147 - 830275 - | branched-chain amino acid transport permease protein TERM 740 831083 - 831069 - G 70 -4.2 -4.66953 | GCAACACGCCAAAAA TAAGGC TAA GCCCCA GCGTCGTCAAGCCGT PAE1392 832565 - 831147 - | branched-chain amino acid binding protein PAE1393 833439 - 832687 - | phosphate ABC transporter, ATP-binding protein PAE1395 834395 - 833478 - | phosphate ABC transporter, permease protein TERM 741 834209 - 834194 - G 73 -11.8 -2.71144 | opp_overlap 834194 834194 GAGTGCCGGCAAGGA GGGGGC CTAT GCCCCC CTTTTCGTCAAACGG TERM 742 834194 - 834210 + g 82 -9.3 -4.25104 | opp_overlap 834194, overlap 834194 GAGTGCCGGCAAGGA GGGGGCC TAT GCCCCCC TTTTCGTCAAACGGC TERM 743 834194 - 834209 + g 77 -11.8 -3.14848 | opp_overlap 834194, overlap 834194 GAGTGCCGGCAAGGA GGGGGC CTAT GCCCCC CTTTTCGTCAAACGG PAE1396 835330 - 834392 - | phosphate ABC transporter, permease protein TERM 744 834752 - 834766 + g 73 -11.4 -2.78384 | overlap 834754 TATGGGCTTTGGGAC GAGGGC ATA GCCCTC TCTCATAACCGCGGC TERM 745 834824 - 834812 - G 73 -9.1 -3.63991 | CATTATTGCCAATAA CACCG CTG CGGTG AAAAGGGAGTAGGAA PAE1397 836585 - 835353 - | phosphate-binding periplasmic protein, putative TERM 746 835691 - 835725 + g 75 -5.1 -4.62069 | gap 2, overlap 835695 835696 835698 CAGCGCTTACGGCCT CGGCG--GATGGGAAGT AGT ACTTCCCGTCGTTGTCG TTTTTAAGATACGCC TERM 747 835695 - 835719 + g 76 -9.3 -3.75505 | overlap 835691 835696 835698 GCTTACGGCCTCGGC GGATGGGAAGT AGT ACTTCCCGTCG TTGTCGTTTTTAAGA TERM 748 835696 - 835718 + g 78 -12.8 -2.8458 | overlap 835695 835691 835698 CTTACGGCCTCGGCG GATGGGAAGT AGT ACTTCCCGTC GTTGTCGTTTTTAAG TERM 749 836700 - 836686 - H 71 -3.4 -4.8048 | overlap 836664 836687 TTTTCATATGAAAAA CGCGGG CCG CCCCCA CTGTAAATTAATATA TERM 750 837104 - 837080 - g 77 -8.6 -4.12456 | overlap 837082 AGAGGATGTTGAAAA TAGCCCTCTA CCTGC TAGAGGGCTT GGAGAAGGGGACGGC TERM 751 837102 - 837082 - g 81 -11.2 -3.6581 | overlap 837080 AGGATGTTGAAAATA GCCCTCTA CCTGC TAGAGGGC TTGGAGAAGGGGACG PAE1399 836731 - 837567 + | hypothetical protein TERM 752 838201 - 838191 - g 83 -5.4 -5.055 | CTAAGGCCTAAAAAA TTGC TAC GCAA CAAGAGGAGGCACGT PAE1403 837936 - 838265 + | hypothetical protein PAE1404 838426 - 838998 + | hypothetical protein PAE1406 838988 - 839398 + | hypothetical protein PAE1407 839519 - 840619 + | hypothetical protein PAE1408 840609 - 841052 + | hypothetical protein TERM 753 841429 - 841447 + G 77 -6.6 -4.58283 | overlap 841427 GTTGCGATTCTGGGC CGTGGCAG GAT CTGCGGCG TTTTTCCACGGGTTG TERM 754 841578 - 841627 + G 95 -13.6 -3.34398 | gap 1, opp_overlap 841609, overlap 841570 841560 841576 CCGCCGGCTTAGCCG CGGCGGCGC-GCGGCGGAGATTT AGCCG AAATCGCCGCTACTGCGTTGCCG TATTTAACCACAGCA PAE1409 841049 - 841765 + | hypothetical protein TERM 755 841857 - 841891 + T 73 -11.2 -2.68942 | overlap 841862 841864 TGGGCCGTTGTGCGG TTCCCGGCGCCCTTGG GGC CTTTGGGCGCCGGGGC GTTCTCTCAGAGCAT TERM 756 841864 - 841892 + T 79 -10.2 -3.48593 | gap 1, overlap 841862 841857 TTGTGCGGTTCCCGG CGCCCTTGGGGCC TTTG GGCGCC-GGGGCG TTCTCTCAGAGCATA PAE1413 842750 - 842580 - | paREP6, authentic frameshift PAE1414 842991 - 843461 + | hypothetical protein TERM 757 843462 - 843475 + F 71 -3.7 -4.87803 | overlap 843462 843461 ATCGTTGACTCCTAA GCCGC TACG GCGTC TTTTATTTAACACTG PAE1418 843676 - 844065 + | hypothetical protein PAE1419 844502 - 844347 - | hypothetical protein PAE1420 844605 - 844477 - | hypothetical protein PAE1421 844790 - 845050 + | hypothetical protein TERM 758 845521 - 845486 - g 100 -4.8 -5.55855 | gap 1 TTTAAAAAAACAAAA GGGGTTT-TTCGAAGAG CTA CTTTCTGAACAAACCCC TCACTGACAGCCTTA PAE1422 845031 - 845528 + | hypothetical protein PAE1423 847358 - 845502 - | carbon starvation protein A-like protein PAE1425 847432 - 847758 + | hypothetical protein TERM 759 847786 - 847764 - f 76 -4.1 -5.03145 | overlap 847766 TAATGTTTGAAAAAA TCCGCCTCT TCTTC AAAGGCGCA TTTCAACATAAATTA PAE1427 847981 - 848883 + | arsenical pump-driving ATPase TERM 760 848909 - 848920 + T 73 -4.4 -4.75472 | opp_overlap 848909 ATCGCCTCTGAAATA TCTC TCAT GAGA TTTTATTAATATGGC PAE1429 849253 - 849158 - | hypothetical protein PAE1430 849719 - 849549 - | hypothetical protein PAE1432 849883 - 850365 + | hypothetical protein PAE1433 850362 - 850898 + | hypothetical protein PAE1434 850941 - 851225 + | hypothetical protein PAE1435 851822 - 851454 - | hypothetical protein TERM 761 851817 - 851840 + g 93 -8.9 -4.82901 | opp_overlap 851834, overlap 851833 AATTTTCAACTCCTC CTCCACGTA AAAAAC TACGTGGGG TTTTTATAGAAAGGC PAE1436 852002 - 851844 - | paREP10 PAE1437 852149 - 852436 + | hypothetical protein TERM 762 852862 - 852839 - T 78 -6 -4.81357 | gap 1, overlap 852841 ATAGTATAAAATAAA CAGGACTGGCC TTG AGCCAATCC-G CCGGCTAATCTATTA TERM 763 852861 - 852841 - T 80 -9.7 -4.00842 | overlap 852839 AGTATAAAATAAACA GGACTGGCC TTG AGCCAATCC GCCGGCTAATCTATT TERM 764 852887 - 852909 + T 71 -10.6 -2.69528 | opp_overlap 852888, overlap 852883 852882 CTATTACGGGAATAG ACGCCGTTAT TAA ATAACGGCGC TGCGTTTAACTTTCG TERM 765 852908 - 852888 - T 85 -14.1 -3.09289 | opp_overlap 852887 852883 852882 TATTACGGGAATAGA CGCCGTTAT TAA ATAACGGCG CTGCGTTTAACTTTC PAE1438 853478 - 852942 - | nicotinamide-nucleotide adenylyltransferase TERM 766 853887 - 853871 - R 73 -4.3 -4.76802 | TTTAAAAACAACAAA CTCCAGG GAG CGCGGAG AGTGTCTACAACGTG pheS 855362 - 853893 - | phenylalanyl-tRNA synthetase subunit alpha TERM 767 854424 - 854448 + g 72 -4.3 -4.62336 | CGTGGCCGTCGTCTG GGTCCTTAA AACGGGG TTGAGGGCC TTTTTGCGATCCCAT PAE1443 855728 - 855393 - | hypothetical protein TERM 768 855533 - 855562 + g 72 -4.3 -4.63486 | gap 1, overlap 855533 855534 TGGGGAATATCCCCC TCCT-GACGAGCTC GTC GAGCTCCTCAAGCA TTTTCTTCGGCACGT TERM 769 855762 - 855789 + r 77 -11.2 -3.2557 | TGATTTCTACTGTTG GGCCCTCGGCTC CACT GAGGCCAGGGCC TTAATAAGTTGTTCT PAE1445 856070 - 855753 - | hypothetical protein PAE1446 857237 - 856107 - | hypothetical protein TERM 770 856698 - 856716 + g 73 -9.6 -3.63744 | overlap 856696 AGAGTTAACCGCCTC GTTGACTG TGT CAGTCAGC TCTTTTAAAAGAGGC PAE1448 858846 - 857347 - | hypothetical protein TERM 771 858460 - 858443 - G 78 -5.5 -4.86621 | opp_overlap 858443, overlap 858424 ACTTTGAAGTAAAAA GCCCC CTCTAGCT GGGGC TCTGTAAAAGATTTT PAE1449 858908 - 859204 + | hypothetical protein PAE1451 860418 - 859201 - | hypothetical protein TERM 772 859557 - 859569 + g 82 -3.3 -5.29782 | CTTTCTCTTTTCTGG CAAGC TCG GCTAG TTTTTTCTCGATCTC TERM 773 860262 - 860228 - G 78 -9.2 -3.90112 | overlap 860229 GTGGCGTCAACTAAA TCCTTGGAGACCCTGC TCA GCAGAGCCCCCAAGCC CTCAACGGATTTTTT TERM 774 860261 - 860229 - G 78 -12.7 -2.93853 | overlap 860228 TGGCGTCAACTAAAT CCTTGGAGACCCTGC TCA GCAGAGCCCCCAAGC CCTCAACGGATTTTT PAE1453 860786 - 860454 - | hypothetical protein PAE1454 861059 - 860907 - | paREP2a PAE1456 861322 - 861206 - | paREP2a PAE1459 861769 - 861572 - | paREP9, associated with SRSRs, authentic frameshift TERM 775 861807 - 861762 - G 70 -6.7 -4.07687 | gap 1, overlap 861780 AGGCTGTCCTCAAAA GAGGGCATTCCACCAAGAGGCC CAA GGCC-CTTGGAAGACGGCGCCC CGGAGGTATGAGGCG PAE1461 862166 - 861756 - | hypothetical protein PAE1463 862318 - 862809 + | hypothetical protein PAE1465 862928 - 863140 + | hypothetical protein TERM 776 863190 - 863173 - f 72 -6.3 -4.2535 | opp_overlap 863166 AGACGAGAGGGAAAA GGGCATA GTCC TATACCC TTGGGTAGTCGACGT PAE1467 863204 - 863806 + | hypothetical protein PAE1469 863842 - 863991 + | hypothetical protein TERM 777 864313 - 864325 + F 70 -9.1 -3.35597 | opp_overlap 864303 864302, overlap 864312 ACAAGGCGGCGATAC GCGGA CCC TCCGC TGTTTCCCGCATGCG TERM 778 864707 - 864687 - f 81 -5.3 -5.09426 | GGCAAGGCGAAAAAA GGCGAAATG CAC CTCCTCGCC GACCAGTTTGACGCC PAE1472 864812 - 865492 + | acetyl/acyl transferase related protein PAE1474 866480 - 865533 - | aminopeptidase TERM 779 865694 - 865671 - G 81 -6.6 -4.72272 | TCCCGTGACGAAAAA GGCCGCGG CGTCTGTC CCGCCGCC TCCCGCCCCTATTTG TERM 780 866497 - 866507 + H 76 -4 -4.96646 | TGGGTCAGAAATCAC TGTA TTA TACA TTTTTCGTTATATAC TERM 781 866975 - 866990 + G 70 -6.8 -4.07687 | GCGGGTAGGGTATGT GGTGTC AAGC GACGCC TTTTACGCAGAGGAT PAE1476 866541 - 867206 + | purine nucleoside phosphorylase PAE1478 868841 - 867201 - | hypothetical protein TERM 782 867776 - 867765 - G 70 -4.4 -4.4767 | CCAGCTACCACAAAA TACG GCTC CGTA GTAACTTATGTAACA TERM 783 868986 - 868997 + H 87 -7.2 -5.14563 | GCGATTACTAGTCCA GGCG ATCT CGCC TTTTTTAATGCCACG TERM 784 869162 - 869123 - H 76 -9.4 -3.72695 | gap 1, opp_overlap 869123 ACTCCCGCGACTAAA GCGCCT-AGAGACAACAAA TTC CTCGTAGTCTCTTAGGCAC TCTTGGCAGAGGGCT PAE1479 869374 - 870267 + | hypothetical protein PAE1480 870314 - 870472 + | paREP10 PAE1481 871051 - 870482 - | phenylacrylic acid decarboxylase-like protein PAE1483 871748 - 871038 - | hypothetical protein PAE1484 871783 - 872031 + | hypothetical protein TERM 785 872785 - 872766 - g 100 -10.7 -4.86939 | opp_overlap 872765 TAACAAAGTGAAAAA CGCCGTG GCTATT CACGGCG ATGTTAAAATAGTCG TERM 786 872868 - 872902 + G 80 -12 -3.38291 | opp_overlap 872865 872863, overlap 872890 CGCATATCAATACCT CCCCGCCGCGCTGGAG TGT TTAGAGCGCGGCGGAG TTGTGCACTTCTACC PAE1486 872242 - 873063 + | hypothetical protein PAE1488 873527 - 873060 - | hypothetical protein PAE1489 874215 - 873607 - | hypothetical protein TERM 787 873867 - 873887 + g 70 -3.9 -4.63486 | overlap 873871 CGTAATATGACGTAA TGGCGGCGA CTC TTGCCTTCA TTTTCTTAGCCGCCT TERM 788 873960 - 873980 + g 74 -9.7 -3.46602 | opp_overlap 873959 TCGCCACCACGAGAT CGCCCTC CTCTACA GAGGGCG TTATGGTCTCCCCCA PAE1490 874621 - 874244 - | S-adenosylmethionine decarboxylase proenzyme TERM 789 875188 - 875177 - H 80 -5.8 -5.00884 | opp_overlap 875186 ACCGGTTTCAAAAAA CGCA TTAT TGCG GAAGACCGCTTTTAC TERM 790 875186 - 875197 + H 74 -7.2 -4.32903 | opp_overlap 875177 AAAAAACGCATTATT GCGG AAGA CCGC TTTTACATATTTCCT TERM 791 875257 - 875246 - H 79 -4.4 -5.25699 | overlap 875248 875250 AGTACATAACAAAAA GAGA CGCC TCTC GCATCGCCCTGCCGG TERM 792 875624 - 875607 - H 72 -9.1 -3.48593 | gap 1, opp_overlap 875612 GAGGCGGTGAGACAA GGCGGGCG CCT CGC-CGCC GGCGCGAGAGGGAGG PAE1496 875704 - 876267 + | hypothetical protein PAE1497 876267 - 876452 + | hypothetical protein TERM 793 877001 - 876982 - g 70 -4.8 -4.57569 | overlap 876984 GCAGGCGTTTAAAAA CTTGCGGG TATT CCCGCCGG GCACCGGCATCATCC TERM 794 878324 - 878340 + G 70 -5.7 -4.31433 | CCCGAGTGGCAGGCG CTGGAGG CCC CCACCGG TTTGTTATACAAGTG PAE1499 876500 - 879124 + | aconitate hydratase PAE1500 879150 - 879479 + | hypothetical protein PAE1501 879522 - 880205 + | triosephosphate isomerase PAE1502 880538 - 880260 - | hypothetical protein PAE1503 880606 - 880959 + | hypothetical protein TERM 795 881615 - 881596 - f 71 -7.8 -3.9318 | AAATGTTTAAAAAGA GGTGGGCT CCTA AGCCAACC GTGCCAACCTTCAAG PAE1505 881616 - 882062 + | 30S ribosomal protein S6e PAE1507 882305 - 882063 - | AsnC family transcriptional regulator PAE1507a 882379 - 882468 + | hypothetical protein PAE1509 882559 - 882759 + | hypothetical protein PAE1511 882804 - 883133 + | hypothetical protein TERM 796 883214 - 883204 - T 74 -6.8 -4.36914 | opp_overlap 883204, overlap 883205 TCCGGCCCGATAAAA GCAC AAG GTGC GCGTAGTTTTGTGCT PAE1513 885439 - 883670 - | translation initiation factor IF-2 PAE1514 886106 - 885579 - | paREP2b PAE1515 886245 - 886712 + | paREP8 PAE1516 886809 - 886988 + | hypothetical protein PAE1517 887357 - 886977 - | hypothetical protein PAE1518 887414 - 887839 + | hypothetical protein PAE1519 887836 - 888798 + | hypothetical protein PAE1521 889023 - 888877 - | hypothetical protein TERM 797 889553 - 889568 + G 70 -10.4 -3.14881 | CTGGCTTCTGCCCGA CGCCAC AATA GTGGCG TTGCTGACGGCCTTG TERM 798 889822 - 889787 - g 78 -10.6 -3.47322 | gap 1 GTTTATCACAATGAA GCTATTA-CAATACGGC AGA GCCGTATCGCTAGTAGC CCTGGGAGTTGGCGT PAE1522 889095 - 889970 + | hypothetical protein TERM 799 890180 - 890169 - g 77 -5.8 -4.6955 | TATGAACAGACAAAA GACG AAGT CGTC CAGCTGTCTATAAAA PAE1523 890115 - 890687 + | hypothetical protein TERM 800 890713 - 890692 - f 89 -10.9 -4.05026 | GGGAAAGTTAAATAA CCACGCCAT AATA ATGGCATGG AATACGTAGAAGCTC PAE1525 890814 - 892013 + | Glu-tRNA(Gln) amidotransferase subunit A (gatA) PAE1526 892798 - 891995 - | hypothetical protein PAE1528 893088 - 894227 + | hypothetical protein PAE1529 894220 - 894642 + | hypothetical protein PAE1530 894675 - 895007 + | hypothetical protein TERM 801 895015 - 895000 - T 73 -7.6 -4.07568 | opp_overlap 894998 894996 895000 CGTTGTCGTTGAAAA GGAGAT AAAC ATCTCC TGTATTTTTCCTCAT TERM 802 895364 - 895343 - T 82 -11.5 -3.62775 | overlap 895332 ACCAGCGTTTAACAA GCGCGCCGA GAGA TCGGCGCTC GTAAAAATGTTTCAT PAE1534 896304 - 895567 - | hypothetical protein PAE1536 896970 - 896383 - | hypothetical protein TERM 803 897043 - 897073 + r 75 -6.7 -4.45083 | gap 1, opp_overlap 897032 AGTAGCCAGATTTCG GCTCCCGAGGCCAG CGCT CGGGCCA-GGGGGC TTTTGTCGCTCTCCG PAE1538 898483 - 897242 - | hypothetical protein TERM 804 897572 - 897553 - G 85 -11.4 -3.61654 | overlap 897554 897566 TACACGGAGTCCAAA CGGCGCCT AGAG AGGCGCCA AGCGCCAAATCCCCA TERM 805 897571 - 897554 - G 77 -12.7 -2.76671 | overlap 897553 897566 ACACGGAGTCCAAAC GGCGCCT AGAG AGGCGCC AAGCGCCAAATCCCC TERM 806 897578 - 897566 - G 71 -10.5 -2.87463 | overlap 897554 897553 AACGGCGCCTAGAGA GGCGC CAA GCGCC AAATCCCCAACAGCG TERM 807 897782 - 897758 - G 79 -12.1 -3.01712 | CTCCCCGGCCCAAGA GGCCACTGCGG CCA CCACAGTGGCT ATGAGGGAGAAGGAG TERM 808 897908 - 897892 - G 73 -9.3 -3.66256 | overlap 897890 CACATGGCGAAAATA CGCTGGC GAC GCCGGCG GCAAATGAGGCAATT TERM 809 897939 - 897955 + g 74 -10.1 -3.54424 | opp_overlap 897938 897935, overlap 897938 ATCTGTAAGAACAGG CCTGGCG ACA CGCTAGG TTTGACGGGCTGCGC TERM 810 897964 - 897982 + g 78 -12.4 -2.87132 | CGCTAGGTTTGACGG GCTGCGCA GTC TGCGCGGC TGTCTCCGGGGCGGC TERM 811 898849 - 898867 + G 83 -13.1 -3.11966 | overlap 898847 TGAAGTACTCCACAC GCCGGGG CACAC CCCCGGC TCTATATCTCTTGTG PAE1540 898499 - 899122 + | metallo-beta-lactamase superfamily protein PAE1541 899142 - 899810 + | hypothetical protein PAE1543 899835 - 900863 + | hypothetical protein PAE1544 900886 - 901053 + | hypothetical protein TERM 812 901189 - 901201 + G 77 -6.3 -4.59069 | overlap 901180 CTCTTGTTGCAATTC GCAAT GTA ATTGC TTTTATAATTCTGCT PAE1545 901077 - 901889 + | hypothetical protein PAE1546 902221 - 901925 - | hypothetical protein PAE1547 902288 - 903130 + | mttB family membrane protein PAE1548 903957 - 903115 - | hypothetical protein PAE1549 903988 - 904353 + | hypothetical protein TERM 813 904651 - 904673 + G 70 -6.3 -4.25256 | gap 1, overlap 904656 904666 CTCGGCCTTGCTACC GCTATCTCCC AGTT GGGAG-TGGC TTCTTTTGCTAAGAG TERM 814 904790 - 904809 + G 70 -5.6 -4.42619 | opp_overlap 904790 CTGGGCTGGTATAAC GCGTCGTT TAAT ATCGGCGC TTTTGTCGGCTATTA PAE1550 904382 - 905488 + | transport protein, conjectural PAE1552 905509 - 906405 + | carbamate kinase PAE1553 907661 - 906402 - | histidyl-tRNA synthetase TERM 815 906780 - 906800 + g 72 -8.1 -3.96148 | GAGATCGTCGTAACG CCCGCCGCC GCC GACGGCGAG TTTGTACTCCCCCAC PAE1554 908698 - 907658 - | saccharopine dehydrogenase, conjectural TERM 816 907979 - 907997 + g 87 -13.8 -3.08679 | opp_overlap 907975 TGCAGTAATTAGCCG GGGGGGCG GCT CGCCCTCC TCTTCCATAAAGCCC PAE1555 909746 - 908727 - | dolichol-phosphate mannosyltransferase TERM 817 909617 - 909633 + g 74 -10.1 -3.42078 | CCCTGGCCACTTCAG CAGTCCC GTC GGGGCTG TTGTCGTCAACTATA PAE1557 909834 - 910859 + | hypothetical protein PAE1558 911735 - 910845 - | 2-oxoacid ferredoxin oxidoreductase subunit beta PAE1559 913360 - 911732 - | 2-oxoacid ferredoxin oxidoreductase alpha subunit TERM 818 912193 - 912207 + g 75 -7 -4.35348 | overlap 912194 CGCCGGGAATAGTCC TCGGCG ATA CGCCGC TTTCTGTTATCTTAT TERM 819 912194 - 912206 + g 74 -10.5 -3.19582 | overlap 912193 GCCGGGAATAGTCCT CGGCG ATA CGCCG CTTTCTGTTATCTTA PAE1560 913458 - 913934 + | hypothetical protein PAE1561 914548 - 913961 - | nucleoside diphosphate kinase (ndk) PAE1562 914682 - 914536 - | paREP2a PAE1563 914994 - 914689 - | paREP2a TERM 820 915427 - 915414 - g 71 -9.5 -3.42702 | overlap 915412 GAGTACGTAAGAAGA GCCGC CGAA GCGGC GTATGAGGCGGCCCG TERM 821 916588 - 916575 - g 72 -4.5 -4.62302 | GAAGAGGGCGAAAAA GCCAA GGAG CTGGC CGCGGAAATGGAGCC PAE1564 915219 - 918680 + | paREP2b PAE1567 920122 - 918884 - | NADH-ubiquinone oxidoreductase subunit TERM 822 919079 - 919065 - G 70 -4.9 -4.46926 | overlap 919052 919066 CAGGCCACTAGAAAA GCCGC CAGCC ACGGC TGCGGGTATGCCAGT PAE1568 921972 - 920119 - | NADH-ubiquinone oxidoreductase subunit TERM 823 920338 - 920320 - G 81 -11 -3.66732 | opp_overlap 920320 GAACCAGGTGAATAA CGACGGAA AGA CTCCGTCG TATAATATGGGCAAG TERM 824 921979 - 921992 + r 85 -3.9 -5.48787 | TACTTCCATAGCCCT CTTTA TTTC TAAAG TTTTTTATATATTGT PAE1570 922115 - 922008 - | paREP2a PAE1571 922947 - 922102 - | paREP2a PAE1573 923320 - 922937 - | paREP2a TERM 825 923656 - 923638 - g 86 -11 -3.92324 | overlap 923622 923621 GGCCTCAATACTAAA CGCATTGG GCG CCAACGCG GAGGCGAAGGAGTAT PAE1574 923330 - 924526 + | paREP2b PAE1576 926014 - 924569 - | NADH-ubiquinone oxidoreductase subunit TERM 826 924919 - 924905 - G 81 -7 -4.66833 | CGCCAAGTTTAAAAA GCCGAC TAT GGCGGC GCCTGCCAGCTCCGG PAE1577 926304 - 926011 - | NADH-ubiquinone oxidoreductase subunit PAE1578 926726 - 926301 - | NADH-ubiquinone oxidoreductase subunit PAE1580 927294 - 926827 - | NADH dehydrogenase subunit I TERM 827 927282 - 927254 - G 82 -9.6 -4.21098 | overlap 927278 ACAGCAACTCTAAAA GCGTCAATTGTG GCCTT CACAACAGACGC GACTCCGCTCATGGC PAE1581 928340 - 927291 - | NADH dehydrogenase subunit H TERM 828 927456 - 927435 - G 86 -5.9 -5.10208 | overlap 927443 927444 GAATGCGAAGAAAAA CATCAAAAC GCTC GTCTTGACG AACACCCATACTGCG TERM 829 927460 - 927443 - G 70 -4.1 -4.62102 | overlap 927435 927444 AGAAAAACATCAAAA CGCTCGT CTTG ACGAACA CCCATACTGCGAGCA TERM 830 927535 - 927519 - G 80 -11.5 -3.29511 | GGGACCGGGCGAGAA GCCGGGC AAG GCCCAGC CGCCTAGGAACAAGA PAE1582 929642 - 928350 - | NADH dehydrogenase subunit D PAE1583 929976 - 929707 - | paREP2a TERM 831 929835 - 929811 - G 70 -3.6 -4.65838 | CAGACACTTCAAAAA GCG-CGATACCT CGG AGGC-TCGTCGC TCTTCTCCTACCTCC PAE1584 930068 - 930982 + | hypothetical protein TERM 832 931016 - 931048 + F 75 -6.1 -4.42386 | overlap 931020 ACGGCTGAGCAATAG CTAACGTCGTCGGCC TCG GGTTGCCGCCGTTTG TTTTGTCGCTACGGA TERM 833 931020 - 931044 + F 78 -5.5 -4.7878 | overlap 931016 CTGAGCAATAGCTAA CGTCGTCGGCC TCG GGTTGCCGCCG TTTGTTTTGTCGCTA PAE1585 931046 - 931249 + | paREP10, authentic frameshift TERM 834 931557 - 931572 + G 81 -6.8 -4.65747 | overlap 931548 931548 CGGGGGCTTAGGGAG CCGCCT CCTG AGGTGG TTTTCTTCCCACTTG folE 931404 - 931967 + | GTP cyclohydrolase I PAE1590 933836 - 932586 - | hypothetical protein PAE1589 931964 - 932638 + | 3-oxoacyl-(acyl carrier protein) reductase TERM 835 932757 - 932732 - Gf 100 -16.9 -3.28924 | overlap 932735 TAGCTTGGCCCACAA CAAGCCGGAGC GCCT GCCCCGGCTTG AGGGTCACTGTGTAA TERM 836 932754 - 932735 - Gf 93 -12.8 -3.78934 | overlap 932732 CTTGGCCCACAACAA GCCGGAGC GCCT GCCCCGGC TTGAGGGTCACTGTG PAE1592 934041 - 934511 + | transcriptional regulatory protein, conjectural PAE1595 935215 - 934535 - | hypothetical protein TERM 837 937539 - 937521 - g 75 -11.6 -3.03474 | opp_overlap 937520 937534 CTTCAGAATGAGATA CGCCGCCG TCA CGGCCGCG CTTGAGTTACTAGAG TERM 838 937721 - 937702 - g 74 -2.8 -4.88736 | GAGGAGGTAGAAAAA TTACGGGA AGAG TACCGCAA ATTACTAGACCGCAT PAE1597 935287 - 937755 + | aminopeptidase TERM 839 938019 - 938033 + G 74 -10 -3.5393 | overlap 938006 ATGCCTTTAGTTGAA GGCCTT GTT AAGGCC TTTCCGCAAGCTCGT upp 937761 - 938396 + | uracil phosphoribosyltransferase PAE1599 938972 - 938361 - | hypothetical protein PAE1600 939412 - 939053 - | paREP2b PAE1602 939613 - 939419 - | paREP2b PAE1604 939756 - 939589 - | paREP2b PAE1605 939941 - 939810 - | paREP2b PAE1606 940070 - 939963 - | paREP2b PAE1607 940116 - 940208 + | paREP2a PAE1608 940301 - 940609 + | paREP2a PAE1610 941699 - 940791 - | bifunctional phosphoglucose/phosphomannose isomerase TERM 840 940916 - 940904 - G 72 -4.7 -4.72556 | GTAAAAAGGATAAAA CGCCC TTG GGGTG CATCTCTACTGCGTA TERM 841 941290 - 941309 + g 73 -11.4 -2.76315 | gap 1, opp_overlap 941280 941281, overlap 941289 AATAACTGCGGAAGT GCC-GCGCG CGG CGCGCTGGC CTTTGGAACTATTAC TERM 842 941373 - 941389 + g 78 -5.7 -4.74706 | overlap 941355 941354 941374 CGTTGTGATAGCCAC CGCGGGG ATT CTCCGCC TTTTTGCGTATTCCA TERM 843 941374 - 941388 + g 71 -9.2 -3.441 | overlap 941355 941354 941373 GTTGTGATAGCCACC GCGGGG ATT CTCCGC CTTTTTGCGTATTCC TERM 844 942293 - 942317 + G 74 -2.1 -5.15969 | overlap 942288 GGAGGAAGGCGGTCA TTGGCCTTAAC TAC GCTAAGCTCAA TTTTTTAGCTTCAGG PAE1611 941716 - 943704 + | helicase, DNA repair rad25 PAE1612 944273 - 943701 - | hypothetical protein PAE1613 944390 - 945061 + | hypothetical protein TERM 845 945153 - 945129 - g 87 -4.3 -5.20154 | opp_overlap 945145, overlap 945145 ATAGAAGTTAAAAAA GAGGAGAAA AAAGAGA CTCCTCCTC AAGGCGTTGACATTT PAE1614 945066 - 945353 + | hypothetical protein PAE1616 945854 - 945687 - | hypothetical protein TERM 846 946650 - 946668 + G 74 -7.4 -4.06491 | opp_overlap 946654, overlap 946652 GCATTGGGGTACGAT GAGAGGGA GGA TCCCTCTA TTTATGTAAAATTCC TERM 847 946652 - 946666 + G 77 -10 -3.62348 | opp_overlap 946654, overlap 946650 ATTGGGGTACGATGA GAGGGA GGA TCCCTC TATTTATGTAAAATT TERM 848 947059 - 947037 - g 71 -11.2 -2.87132 | GGCCTTGTTCACATA GCCCCAGGCC ATG GGCCTGAGGA CTTCGAACTGGCGAA TERM 849 948308 - 948324 + G 74 -7.9 -4.08394 | opp_overlap 948299 948297, overlap 948301 948321 TAAATACGCGGCCTA CGCCGTG TTA CACGACG TTTTGAAAAAAGTCT TERM 850 948488 - 948504 + G 72 -6.5 -4.37886 | GCTAATTTATGCATA CCGCGAG CTC TTTGCGG TTTTCTCAGCACTAG PAE1617 946044 - 948989 + | isoleucyl-tRNA synthetase PAE1618 949355 - 948996 - | paREP2a PAE1619 949465 - 950037 + | paREP2b TERM 851 950249 - 950238 - g 70 -7.2 -4.0371 | GACTGGGCAGACAAA GCGC TGAA GCGC CTTGAAGAAATAGCA TERM 852 950450 - 950462 + G 74 -3.4 -4.97158 | overlap 950456 GTATGAGGTAGGCGG GGAT GAGAA ATCC TTTTCTTTCATCTGG PAE1621 950034 - 950696 + | paREP2b TERM 853 950725 - 950709 - f 82 -7.9 -4.6709 | TAAAACCACATAAAA GACGGCA GAA CGCCGCC CCTATTACCTGTCTT PAE1623 951062 - 952225 + | hypothetical protein PAE1624 952580 - 952209 - | hypothetical protein PAE1625 952600 - 953307 + | hypothetical protein TERM 854 953386 - 953398 + T 78 -4.7 -5.0133 | overlap 953383 GCCTGAGGCGTGCCA CCCCC TAA GTGGG TTTTTTAGACAAGTC PAE1626 953905 - 953390 - | hypothetical protein PAE1627 954039 - 954791 + | hypothetical protein TERM 855 954916 - 954906 - g 70 -6.8 -4.06182 | CTATGGAGAAAAACA GGAC TTT GTCC ACGCTTCTGCTTAAG TERM 856 955574 - 955597 + G 71 -11 -2.87146 | gap 1, opp_overlap 955551, overlap 955573 955587 TCCTCAGGACCCCTC TGGGTCGGCCC GTT GGG-CGACCCG CTTATTATAAACAAG PAE1628 954788 - 955879 + | N(2),N(2)-dimethylguanosine tRNA methyltransferase PAE1629 955876 - 956400 + | adenylate kinase, conjectural PAE1630 956462 - 956665 + | paREP2b PAE1632 956705 - 957136 + | hypothetical protein PAE1634 957981 - 957301 - | hypothetical protein TERM 857 957570 - 957580 + g 71 -2.4 -5.00616 | opp_overlap 957570 CTGCCACTACTAAAT CCCC CGA GGTG TTTTTTCGCGCCAAA PAE1635 958970 - 957978 - | hypothetical protein TERM 858 958980 - 958994 + r 77 -11.4 -3.19202 | overlap 958978 ACGCACTACTCCTCT GGCAGG TAG CCTGCC TCTATTAATATCTTT PAE1636 959959 - 958970 - | hypothetical protein PAE1638 960064 - 960777 + | hypothetical protein PAE1639 961257 - 960778 - | ribosomal protein L13 TERM 859 960962 - 960974 + g 74 -3.3 -5.01042 | GATGTGAGACCTCTA AAGGC CCT GCCTC TTTTTCGTTTGACTT PAE1641 961333 - 961644 + | hypothetical protein PAE1642 961984 - 961646 - | hypothetical protein TERM 860 961992 - 962002 + r 75 -2.6 -5.10933 | AGGTTCATTGTAATT TATT GAT AATA TTTTCTTTTACATCA PAE1643 962295 - 961981 - | hypothetical protein TERM 861 962132 - 962145 + g 81 -4.5 -5.05228 | opp_overlap 962125 ATGTTAAACCCCTCC GGGGA AAAC TCCTC TTTTTCTAGTTTAAT tfb 963326 - 962325 - | transcription initiation factor IIB TERM 862 963249 - 963227 - G 71 -10.6 -2.91264 | opp_overlap 963226 TGGGGCACTTATATA CCTCGCCACT CTC AGTGACAAGG CTTAAATATCCTTCA rfc 964353 - 963394 - | replication factor C small subunit PAE1647 964799 - 964350 - | hypothetical protein TERM 863 964580 - 964601 + g 72 -6.5 -4.29845 | overlap 964589 ACACTAAGCCCCTTT CCAGTGCCT GTCT AAGCGCTGG TTTTGACTTCACTTC TERM 864 964664 - 964688 + g 71 -3.4 -4.84673 | opp_overlap 964665, overlap 964660 964658 964665 TCTCAATAAGCGAAG ACTTAGGCGC TTGCC GCGCCTCGGG TTTTCTCTTCTTTAA PAE1649 965961 - 964792 - | GTP-binding protein TERM 865 965433 - 965416 - G 74 -2.7 -5.00616 | overlap 965417 CTCGTCCTCAAAAAA CTGGAAA ATCC TTTCCAC AGCCCCGCGGTCTGT PAE1650 966694 - 965984 - | enoyl-CoA hydratase, TERM 866 966385 - 966366 - G 70 -4.4 -4.57304 | gap 1, overlap 966368 ACGTAATCAAAGAAA TATAGGAGT TCT ACTCCTA-A TCCATATACATCTCC TERM 867 966384 - 966368 - G 78 -9.5 -3.88884 | overlap 966366 GTAATCAAAGAAATA TAGGAGT TCT ACTCCTA ATCCATATACATCTC TERM 868 966866 - 966840 - g 76 -9.5 -3.75153 | opp_overlap 966845 CCGGGCCAATTCAAA GTCCCCGATAA GGTCG TTATCGGGTAC ATAGAGGGAGACGGG PAE1651 966720 - 968039 + | isocitrate dehydrogenase PAE1652 968515 - 968042 - | N-acyltransferase PAE1653 969543 - 968659 - | hypothetical protein TERM 869 969055 - 969067 + g 72 -4.9 -4.64598 | TTCTTGTTCTATTAT GAAAA TAA TTTTC TTTTTAACGTCATTC PAE1656 972524 - 969597 - | paREP2b TERM 870 970269 - 970281 + g 73 -9.1 -3.60805 | overlap 970257 CTCCGCCAGCCCCGC CGCCT TCA AGGCG TTTACGATGGCGTCT TERM 871 970473 - 970500 + g 72 -4.8 -4.67353 | overlap 970475 GCCCTCCTTCAGACC CCTCGCCTTTAA TGCG TTTAAGGCGGCG TTTTTAGATGCCTCG TERM 872 970827 - 970853 + g 73 -9.4 -3.60296 | GATAGAGGCCAGCCG TTCGGCGTTTTC GCG GGAGCCGCCGAA TTTGGCATAAAGCTC TERM 873 971250 - 971268 + g 70 -11 -2.70932 | opp_overlap 971246 GCCCCTATACACTGA GCTTGGCT TAA GGCCAAGC TCCTTCAGAGCCCAC TERM 874 971978 - 971989 + g 70 -3.6 -4.7268 | GTGCGCCGATTGTAA TGGC CCTA GCCG TTTTCTTCACTATTT TERM 875 972213 - 972226 + g 72 -5.9 -4.29656 | GTTTTCTACAAATGT GGCGT ATAC GCGCC TTTTGCCGTTTTCTG PAE1657 973680 - 972652 - | paREP2b TERM 876 972970 - 972994 + g 83 -6.3 -4.98255 | opp_overlap 972970, overlap 972971 TCTTTGCTCATACCA CGCCTTAGAGG CCT CCTCAAGGGCC TTTTTGTAGTTGGCG TERM 877 972971 - 972993 + g 77 -9.8 -3.5823 | opp_overlap 972970, overlap 972970 CTTTGCTCATACCAC GCCTTAGAGG CCT CCTCAAGGGC CTTTTTGTAGTTGGC TERM 878 973336 - 973351 + g 73 -11.8 -2.57564 | overlap 973335 CCACGCCATCAGCCC GGCCGC CGCG GCGGCC ATTATGAACCAATGC PAE1658 973781 - 974215 + | paREP2a TERM 879 974237 - 974247 + T 80 -6.8 -4.62069 | GTGCGTAAAAGTCCT CCTC CCA GAGG TTTTTGAACTGCCGC PAE1659 975245 - 974301 - | C-5 cytosine-specific DNA methylase TERM 880 975941 - 975923 - g 82 -7.4 -4.52857 | ATGCTCTATAGAAAA GCGGGT TATGACT ACCCGC TACGCCTAATTTATT PAE1662 975494 - 976084 + | hypothetical protein PAE1663 976364 - 976071 - | hypothetical protein PAE1665 976587 - 976417 - | paREP2b TERM 881 976777 - 976802 + G 74 -2.5 -5.14563 | opp_overlap 976765, overlap 976763 TAAGGCGTCGCTGTA CGCCTCTGA CTTCTCCC TCAGGTGCG TTTTTTAGTGGGAGG PAE1667 976685 - 976810 + | paREP2a PAE1668 976823 - 977050 + | paREP2a pheT 977064 - 978611 + | phenylalanyl-tRNA synthetase subunit beta PAE1670 978642 - 979001 + | hypothetical protein PAE1671 981128 - 979203 - | paREP2b TERM 882 979670 - 979658 - G 71 -9.1 -3.54424 | CCCTATCGTCGTAAA CTGCC AGT GGCAG ATCTACAGTCCCCTC TERM 883 979911 - 979928 + g 77 -3.4 -5.08088 | overlap 979902 CCCCGCCGCCTTTAG GGCGTT TACAAT AACGTC TTTTTGTTCCGCCTT TERM 884 980871 - 980889 + g 70 -11 -2.70932 | opp_overlap 980867 GCCCCTATACACTGA GCTTGGCT TAA GGCCAAGC TCCTTCAGAGCCCAC PAE1672 981274 - 981384 + | paREP2a TERM 885 981707 - 981696 - g 75 -4.4 -4.80729 | overlap 981686 981700 AAACACAATACAAAA CGTA TTAC TACG CCGTTGTAGACGGCG PAE1673 981371 - 982204 + | paREP2a PAE1674 982563 - 982330 - | hypothetical protein PAE1676 983020 - 982745 - | hypothetical protein PAE1677 983421 - 983017 - | hypothetical protein PAE1678 983861 - 983418 - | hypothetical protein PAE1679 983907 - 984557 + | D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural PAE1681 984569 - 985162 + | adenylate kinase PAE1683 985368 - 985931 + | hypothetical protein TERM 886 986240 - 986214 - g 81 -5.8 -4.83169 | gap 1 ATGCGTGCACAAAAA GCCGCTTGTGG TAATCC CCACT-GCGGC GAGCCACGACGGAAT PAE1685 985918 - 986946 + | glycerol dehydrogenase (gldA) PAE1687 987899 - 987492 - | hypothetical protein TERM 887 987718 - 987743 + g 82 -3.4 -5.22312 | overlap 987719 TCGTTTATTTTTATT TTTTTGGAGA TATTTC TCTTCAAAAG TTTTTTAATATAGAT TERM 888 989128 - 989098 - g 78 -12.4 -2.90941 | overlap 989123 AGTATACGTGAGAGA GGCGGCGGCGGTGG CGG CCACAGCATCCGCC CAGAAGGTGGCCAGA PAE1688 987941 - 989245 + | malate oxidoreductase (mae) TERM 889 989235 - 989245 + T 82 -2.6 -5.46276 | opp_overlap 989235 TAATGATGGAGAAAA TTAT TGA ATAA TTTTTTATCTCTGTT PAE1689 990479 - 989250 - | citrate synthase PAE1690 991191 - 990607 - | hypothetical protein TERM 890 991086 - 991096 + g 71 -3.2 -4.87291 | CCCCGATTCTGAGCT CTTC TGC GAGG TTTTTCCTTCCCCTG PAE1693 991230 - 992582 + | TBP-interacting protein TIP49 PAE1694 993041 - 992574 - | hypothetical protein TERM 891 992835 - 992817 - G 72 -4.4 -4.7254 | overlap 992819 AGGCTTGACGAAAAA CGTCGCGA CAA TTGCGGCG AAAAGGAGTATTGTA PAE1695 994224 - 993043 - | paREP2b PAE1696 994486 - 994202 - | paREP2b PAE1698 994558 - 994905 + | paREP2a PAE1702 996578 - 995070 - | hypothetical protein TERM 892 995773 - 995759 - G 70 -7 -4.11216 | overlap 995760 TGTTCACGCCTAAAA GCGGCC CCA GGCCGG CCAATATATTTAGCT TERM 893 995772 - 995760 - G 72 -10.5 -3.06515 | overlap 995759 GTTCACGCCTAAAAG CGGCC CCA GGCCG GCCAATATATTTAGC PAE1703 997189 - 996617 - | hypothetical protein TERM 894 997001 - 996985 - G 84 -7.9 -4.62069 | opp_overlap 996996 996998 997000, overlap 996994 CGGGCACTTTAAAAA CGCCGAA ACC CCCGGCG TGGTGCCCGTTTCCC PAE1704 997563 - 997444 - | hypothetical protein PAE1706 999581 - 997704 - | paREP2b TERM 895 997800 - 997830 + gH 100 -14 -3.59979 | overlap 997808 GGCGTCTAGCTGGTC GGCGAGGAGGGCCA CTC TGCCCTTTCTCGCC TTTCCCGTCAACGCC TERM 896 998781 - 998806 + gH 73 -9.7 -3.35934 | overlap 998799 GCCTTTTAGCGCGTT TAGCCACCCGT CGTG GCGGATGGCTA TTATGCCGTCTGTGG PAE1707 999581 - 999664 + | paREP2a PAE1708 999677 - 999835 + | paREP2a TERM 897 999938 - 999951 + GF 71 -9.5 -3.28924 | GCAAGGGGCCTTCTA CGGCG TTGA CGCCG TTGTGGCAGAGGGTG PAE1709 999789 - 1000067 + | paREP2a PAE1710 1000064 - 1000750 + | hypothetical protein rpl12p 1001071 - 1000739 - | 50S ribosomal protein L12P PAE1714 1001318 - 1001115 - | ribosomal protein L38 PAE1715 1002004 - 1001462 - | hypothetical protein TERM 898 1002764 - 1002774 + G 72 -8.2 -3.72576 | AATATGACGGAGTTC GGCG TAT CGCC TTTAATACCGGCGAA PAE1716 1002116 - 1003042 + | carboxyphosphonoenolpyruvate phosphonomutase (prpB) TERM 899 1003679 - 1003664 - g 72 -7.5 -3.97834 | opp_overlap 1003664 TAACTCGAGCAGAAA CGCGG TATTCG CCGCG TTGCTGGCGCAAGAG PAE1717 1003035 - 1004396 + | propionate catabolism protein prpD PAE1717a 1004593 - 1004477 - | hypothetical protein TERM 900 1005793 - 1005813 + G 72 -7.5 -3.87977 | ATTACCGTGCCTCCC GGCGGCGAT TAC ATCTTCGCC TATTTTATCCTGTTC TERM 901 1006271 - 1006259 - g 76 -10.5 -3.28712 | opp_overlap 1006267, overlap 1006267 CCTTCCCGCTTAGAA GCGCC AAA GGCGC CGGCAGAGGCGCCTT TERM 902 1006284 - 1006267 - g 77 -9.8 -3.62591 | opp_overlap 1006267, overlap 1006259 CTTAGAAGCGCCAAA GGCGCC GGCAGA GGCGCC TTATCCGTTGCTCTG TERM 903 1006267 - 1006284 + G 74 -9.8 -3.4439 | opp_overlap 1006259 1006267 CTTAGAAGCGCCAAA GGCGCC GGCAGA GGCGCC TTATCCGTTGCTCTG PAE1718 1005028 - 1007094 + | hypothetical protein TERM 904 1007415 - 1007431 + G 78 -5.7 -4.81551 | AGCCGTTGAGATTTA GGAGGCG CAT TGCCGCC TTTTTGATATCCCTA PAE1719 1007099 - 1007626 + | hypothetical protein PAE1720 1008019 - 1008204 + | hypothetical protein PAE1722 1008195 - 1009070 + | hypothetical protein TERM 905 1009374 - 1009343 - f 77 -7.3 -4.46212 | opp_overlap 1009347 CTTGGTATTACAAAA GCAACTAATGCCG AAAGGA CGGTGTTAGTTGC TGACGAGGCGCTTAA PAE1723 1009425 - 1009997 + | hypothetical protein TERM 906 1010639 - 1010622 - g 72 -8.4 -3.78329 | TTCGACGAAGTGAAA GCCGTG GAGAAA CACGGC GACGTTTTTGTGGTA TERM 907 1011199 - 1011175 - g 90 -9.1 -4.50358 | opp_overlap 1011173 1011175 1011176, overlap 1011176 AGGGAAAGACTAAAA CCCCCGGCGTC TTT GCCGCCGGCGA TATTGTGGCCTATCC TERM 908 1011198 - 1011176 - g 72 -10.4 -3.2913 | opp_overlap 1011176 1011175 1011173, overlap 1011175 GGGAAAGACTAAAAC CCCCGGCGTC TTT GCCGCCGGCG ATATTGTGGCCTATC TERM 909 1011324 - 1011299 - g 82 -9 -4.29472 | overlap 1011294 1011300 GAAACTAAAAGGAAA GCCAGTCCAC AGCCTA GTGGACTGGA GGGCCGAGAAAAAAT TERM 910 1011323 - 1011300 - g 81 -12.5 -3.16056 | overlap 1011299 1011294 AAACTAAAAGGAAAG CCAGTCCAC AGCCTA GTGGACTGG AGGGCCGAGAAAAAA PAE1725 1010358 - 1011341 + | thioredoxin reductase (trxB) PAE1726 1012242 - 1011361 - | hypothetical protein TERM 911 1011969 - 1011992 + g 84 -11.1 -3.83026 | CGCTGTCTTTCAGCC TTCTCAGCG CCTCTT CGCTGAGAA TTTCATCTCCGCGGA PAE1727 1013073 - 1012246 - | protease, conjectural TERM 912 1012664 - 1012694 + g 71 -2.7 -4.82901 | opp_overlap 1012667, overlap 1012665 1012667 GCGGAGGTGGCTATC CA-AGGCCTCACAGT TCT ACT-TGAGGCCTCTA TTTTTATAAGCGCCG TERM 913 1012665 - 1012692 + g 74 -7.8 -4.03995 | gap 1, opp_overlap 1012667, overlap 1012664 1012667 CGGAGGTGGCTATCC AAGGCCTCACAGT TCT ACT-TGAGGCCTC TATTTTTATAAGCGC TERM 914 1012667 - 1012690 + g 77 -10.4 -3.61001 | gap 1, opp_overlap 1012667, overlap 1012665 1012664 GAGGTGGCTATCCAA GGCCTCACAGT TCT ACT-TGAGGCC TCTATTTTTATAAGC TERM 915 1013117 - 1013130 + H 81 -5.3 -5.11613 | ACTTTCACGTTTTGT CGTAA TTTT TTACG TTTTTTGGCTAATAT rps19p 1013189 - 1013665 + | 30S ribosomal protein S19P rps17p 1013742 - 1014107 + | 30S ribosomal protein S17P PAE1731 1014307 - 1014119 - | paREP2a PAE1733 1014403 - 1014320 - | paREP2a TERM 916 1015656 - 1015644 - gH 73 -9.1 -3.60805 | AGACGCCATCGTAAA CGCCT TGA AGGCG GCAGGGCTTGAGGAG TERM 917 1015760 - 1015742 - gH 75 -9.6 -3.53091 | ACGGCCTTCGCGAAA TTCAACGC ATG GCGCTGAA TGGCGACTTGGAGGC PAE1734 1014403 - 1016325 + | paREP2b TERM 918 1016432 - 1016422 - g 74 -2.4 -5.13722 | GTGATTAAAACAAAA CTGG AGG CCGG GGATTACGCCGCTGG PAE1735 1016329 - 1016979 + | hypothetical protein PAE1736 1018066 - 1017035 - | beta-glucosidase TERM 919 1017517 - 1017527 + g 71 -2.6 -4.99134 | AATATAATATTGGTT TAAA TAA TTTA TTTTTGCTTTCAAAT TERM 920 1017674 - 1017662 - G 74 -6.2 -4.46112 | opp_overlap 1017669 TTTTAGTGAAAGAAA GCCG TGCGG CGGC AAATCGCCTCTGATA PAE1738 1018631 - 1018206 - | hypothetical protein PAE1740 1019658 - 1018624 - | glyceraldehyde-3-phosphate dehydrogenase TERM 921 1019459 - 1019473 + g 71 -2.8 -4.84529 | overlap 1019456 TCTATAGTGCCAGCT GGCT CAATCCC AGCC TTTTTAAATTTATCC PAE1742 1020881 - 1019655 - | phosphoglycerate kinase TERM 922 1020729 - 1020700 - G 71 -10.7 -2.9155 | gap 1, overlap 1020695 TGGGCCAACACCACA GC-CCTGGCCCCCG CGT CAGAAGCCAGGCGC AAGGTGTACGAGTGA PAE1744 1020969 - 1021562 + | hypothetical protein TERM 923 1022227 - 1022207 - g 72 -8.9 -3.737 | GAAGTTTTCAGGAAA GAGCTCGGC GGA GGCGAGCCC AAATATCTAGAGTAT PAE1748 1021646 - 1023472 + | threonyl-tRNA synthetase TERM 924 1023569 - 1023559 - g 71 -2.4 -4.99035 | opp_overlap 1023563 CTACCCAGATAAAAA CGCC CGT GGTG GGAAAACACGTTTAC PAE1749 1023534 - 1023914 + | S-adenosylmethionine decarboxylase proenzyme PAE1752 1024073 - 1024987 + | hypothetical protein TERM 925 1025069 - 1025050 - T 93 -9.2 -4.79683 | AACGCACAAAATAAA GGCGCGCT AAGG AGGGCGCC AAGGGATACGGTGTT PAE1755 1026019 - 1025513 - | hypothetical protein TERM 926 1025933 - 1025921 - G 88 -10.5 -4.10781 | AAGAATCCAGAGAAA CGCGG CGC CCGCG ATAAACAACGCCACG PAE1756 1028252 - 1026027 - | hypothetical protein TERM 927 1028257 - 1028271 + r 100 -7.8 -6.67014 | opp_overlap 1028257, overlap 1028256 CACCTCTGCATAGGA GACGGG ACG TCCGTC TTTTTTTTTTTACTT PAE1759 1028954 - 1028505 - | molybdopterin-guanine dinucleotide biosynthesis protein B, conjectural PAE1760 1029253 - 1028951 - | hypothetical protein PAE1761 1030305 - 1029250 - | myo-inositol-1-phosphate synthase, conjectural TERM 928 1029872 - 1029897 + g 70 -5.9 -4.15222 | ACCCCCGCCCTCAGA GCCGCCTCGGC GTAC GCCTCAGCGGC TTTCTTGGCGCCAGT PAE1762 1031967 - 1030363 - | iron-sulfur binding reductase, TERM 929 1030589 - 1030605 + g 72 -7.2 -4.21812 | overlap 1030590 CAGCAGAAGGTCTTT TCGCCG CGTCT CGGCGG TTCTTTTAACTGGCC PAE1763 1032811 - 1032167 - | hypothetical protein TERM 930 1032384 - 1032396 + g 73 -9.1 -3.61232 | overlap 1032382 CTGTGAGCTTCCCTA CTGGC CAG GCCAG TCTTTATCTCCACAG PAE1764 1034345 - 1032792 - | GTP-binding protein TERM 931 1034112 - 1034137 + g 74 -10.3 -3.53563 | opp_overlap 1034114, overlap 1034113 CACCCTCAGAATGTA AAGCGAGGCGC CGAC GCGCCTCGCCA TTTCCCGCAACGTCT TERM 932 1034113 - 1034136 + g 85 -13.8 -2.71924 | opp_overlap 1034114, overlap 1034112 ACCCTCAGAATGTAA AGCGAGGCGC CGAC GCGCCTCGCC ATTTCCCGCAACGTC TERM 933 1034135 - 1034114 - G 100 -17.3 -3.80625 | opp_overlap 1034113 1034112 CCCTCAGAATGTAAA GCGAGGCGC CGAC GCGCCTCGC CATTTCCCGCAACGT PAE1765 1034653 - 1034552 - | hypothetical protein PAE1765a 1034772 - 1034650 - | paREP2a PAE1766 1034996 - 1034745 - | paREP2a PAE1768 1035363 - 1034986 - | paREP2a TERM 934 1036811 - 1036788 - g 81 -6.8 -4.62302 | gap 1, opp_overlap 1036788 TAAGAGTGCTAAAAA TTTC-CGAGGA AGA TCCCCGTGAAA TAATTGCAAAGCTCT PAE1770 1035524 - 1038262 + | paREP2b hppA 1040413 - 1038248 - | membrane-bound proton-translocating pyrophosphatase PAE1772 1040512 - 1040724 + | paREP2a TERM 935 1041026 - 1041046 + G 76 -12.6 -2.52676 | opp_overlap 1041022 1041038 TTGTTAATTTACGTC CAGCCCCA ACTAG TGGGGCTG TCGCTTGAGCCCCTC TERM 936 1041417 - 1041397 - g 70 -9.7 -3.23393 | overlap 1041395 GCTCACTTTACAAGA GGCGGCT GAGGTCG AGCCGCC GAGCGTATTAGAAGA PAE1773 1040828 - 1043131 + | H+-transporting ATP synthase subunit I (atpI), conjectural PAE1774 1043131 - 1043802 + | hypothetical protein TERM 937 1044476 - 1044453 - g 85 -6.6 -4.84673 | CCAAATAAGACAAAA CGCTCAGCCT GATG AGGTAGAGCG CGAGGGGAAGGCCAT PAE1775 1043842 - 1044756 + | hypothetical protein PAE1775a 1045063 - 1044710 - | hypothetical protein PAE1777 1045308 - 1045066 - | hypothetical protein PAE1778 1045535 - 1045308 - | ribosomal protein L29 rps3p 1046164 - 1045574 - | 30S ribosomal protein S3P PAE1780 1046999 - 1046196 - | protein part 2, authentic frameshift TERM 938 1046492 - 1046511 + gr 70 -10 -3.05384 | GGGAGTGCCCTCTAC CGTCTGGG GAAA TCCAGACG TTGCCTCCCACCACG PAE1780a 1047247 - 1046951 - | protein part 1, authentic frameshift rpl22p 1048119 - 1047613 - | 50S ribosomal protein L22P TERM 939 1047881 - 1047925 + g 81 -7 -4.62302 | opp_overlap 1047887, overlap 1047885 TTCACAGGCCACTTG GCAACAGGCCAGCCCTCCCA AGGAG TGGCGTGGTGGGCCTGTTTC TTTTTAAAAGTCTTA TERM 940 1047885 - 1047921 + g 81 -6.4 -4.86385 | opp_overlap 1047887, overlap 1047881 CAGGCCACTTGGCAA CAGGCCAGCCCTCCCA AGGAG TGGCGTGGTGGGCCTG TTTCTTTTTAAAAGT PAE1783 1049547 - 1048219 - | hypothetical protein TERM 941 1049446 - 1049426 - G 70 -6.8 -4.13654 | gap 1 TTCTCAAACCAGAAA CCCCCA-GG CTGG CCGCGGGGG CTGTGTAACAAGAAC TERM 942 1049502 - 1049483 - G 72 -5.6 -4.46854 | overlap 1049476 GTATGCAACAAGAAA CTCGCCGC AGAC GCAGCCAG CGTTGCCCCGGCCAC TERM 943 1049845 - 1049902 + G 93 -11.8 -4.15788 | opp_overlap 1049841, overlap 1049837 GGGCGAAGTCAGCGC GGCGGC-GGCGCGGGCTCTTGCCTACGG GTCT CTGCTGGCCGGCG-CCGCGCTAGCCGCC TTTATTGGCCCCATT PAE1784 1049618 - 1050448 + | hypothetical protein TERM 944 1051020 - 1050994 - g 71 -9.5 -3.54424 | gap 1 GGCGACTGGTCTAAA GAGGCG-CCTGA GTAT TCAAGACGCCTC TCAATCCCAGCGGAA PAE1785 1050430 - 1051113 + | hypothetical protein PAE1786 1051574 - 1051110 - | hypothetical protein PAE1788 1052472 - 1051627 - | hypothetical protein TERM 945 1053589 - 1053579 - g 70 -4.6 -4.56597 | opp_overlap 1053565 GCGGCTTTTTAAAAA GGGA GGT CCCC TATACGAAGAGCCGG PAE1789 1052911 - 1054245 + | hypothetical protein TERM 946 1054321 - 1054286 - g 70 -6.9 -4.07687 | gap 1, opp_overlap 1054281 1054286 1054312 AGGCCTCCTGTAAAA GCCGTGTGGACGTC GAGGAGGAA GACG-CCAGACGGC TACTATGTAGTGGTG PAE1790 1054268 - 1054477 + | hypothetical protein PAE1792 1055061 - 1054486 - | hypothetical protein TERM 947 1054868 - 1054856 - G 72 -6.9 -4.20531 | opp_overlap 1054867, overlap 1054857 GAGACGCAGTCAAAA CCCCC CGC GAGGG CCCACTCGAGGGCCT TERM 948 1055568 - 1055589 + r 78 -5.8 -4.90013 | opp_overlap 1055559 1055568 1055567 TAATTACGCAAACAC CGCTGTGA TTGCCC TCACCGCG TTTTTAGTTGCGTTA PAE1796 1056224 - 1055844 - | hypothetical protein TERM 949 1056708 - 1056690 - g 74 -6 -4.56597 | GGCGTTGGTTAAAAA CCCCTCAA TTA TTGAAGAG GGGCTTGAGGTAGTA PAE1797 1056268 - 1057020 + | hypothetical protein PAE1798 1057217 - 1057441 + | hypothetical protein PAE1799 1058770 - 1057424 - | 4-aminobutyrate aminotransferase TERM 950 1058140 - 1058123 - G 78 -8.4 -4.16016 | CCAGTCTTCAATAAA GGCGAG GGCGTA CTCGCC GCACTCCTCGGGGTC TERM 951 1059589 - 1059573 - H 70 -5.1 -4.46233 | CTAAGCCTAAATAAA CGGCT GAAGGGA AGCCG AGGGCGATTCCCAGC TERM 952 1060081 - 1060036 - g 77 -5.9 -4.71776 | gap 1, overlap 1060026 1060037 CAATACCCAAGAAAA CGGC-GAGGCCTCCTCCCAGGG CCC CCAGGGGCGGCGACCTCTACCA AATTAGCGATGCGTA PAE1802 1059666 - 1061771 + | hypothetical protein TERM 953 1061958 - 1061970 + G 86 -6.9 -4.89729 | GGCGCTAGTCCACCC GGCGC TTG GCGTC TTTTTAGCTTTTGTG PAE1803 1061749 - 1062387 + | hypothetical protein PAE1803a 1062448 - 1062879 + | hypothetical protein TERM 954 1063061 - 1063049 - g 72 -10.5 -3.12529 | opp_overlap 1063047 1063052, overlap 1063047 GGAAGTGAAGAGAGA GGCCC AGT GGGCC AGCTGGTTTGGCGAC PAE1804 1062882 - 1063499 + | hypothetical protein PAE1805 1063500 - 1063745 + | hypothetical protein TERM 955 1064108 - 1064091 - T 74 -8.3 -3.92178 | overlap 1064092 ATTATCCCAAGTAAA GGGCCGC AGAG GCGGCCA CGGGATTGCCGCCGG TERM 956 1064107 - 1064092 - T 78 -11.8 -2.94825 | overlap 1064091 TTATCCCAAGTAAAG GGCCGC AGAG GCGGCC ACGGGATTGCCGCCG PAE1807 1064358 - 1064077 - | hypothetical protein PAE1808 1065168 - 1064398 - | ABC transporter, putative PAE1809a 1065295 - 1065212 - | paREP2a PAE1810 1065442 - 1065347 - | paREP2a PAE1811 1065641 - 1065760 + | paREP2b PAE1813 1065829 - 1067253 + | ABC transporter subunit, putative PAE1814 1067305 - 1067508 + | hypothetical protein PAE1815 1067810 - 1068403 + | hypothetical protein TERM 957 1068480 - 1068469 - f 85 -7.2 -5.00616 | overlap 1068470 CCTCCTCTGAAAAAA CCGC AGTT GCGG TGTCCAAACGGCGAA PAE1816 1068564 - 1070129 + | hypothetical protein TERM 958 1070729 - 1070745 + G 100 -4.3 -5.53991 | TAAACAAATGAGAGG CGCCATG GGC TACGGCG TTTTTTTAGTGGATA PAE1818 1070265 - 1071164 + | ribosomal protein S6 modification protein (rimK) PAE1819 1071252 - 1072682 + | hypothetical protein TERM 959 1073295 - 1073317 + GT 74 -10.6 -3.24232 | opp_overlap 1073313, overlap 1073288 1073293 TACGTTAAGCCGCTT CGTCGTCTTT GGG GAAGACGGCG TATATTTAAGAAACG TERM 960 1073428 - 1073442 + GT 78 -9.2 -3.87815 | overlap 1073418 TCTGGGCCGGTGGAG CGCGCC AGC GGCGTG TTTATAAAAGTGCCC PAE1820 1072651 - 1073472 + | hypothetical protein TERM 961 1073476 - 1073452 - T 74 -7.2 -4.36914 | overlap 1073453 1073454 GGCGTGTTTATAAAA GTGCCC-ATCCG CGG CGGATAGGGC-C AAACGCCTGAACCAG TERM 962 1073475 - 1073454 - T 73 -10.9 -2.52946 | gap 1, overlap 1073452 1073453 CGTGTTTATAAAAGT GCCC-ATCCG CGG CGGATAGGGC CAAACGCCTGAACCA PAE1823 1073909 - 1073733 - | hypothetical protein PAE1824 1074869 - 1074027 - | hypothetical protein TERM 963 1074120 - 1074097 - G 79 -12.4 -3.00525 | overlap 1074092 GCGGGGCAAACCACA GGCTCACACG GAGG CGTGTGGGCC GGGCAGGCGGACTTT PAE1825 1075476 - 1074889 - | hypothetical protein PAE1826 1075894 - 1075466 - | hypothetical protein TERM 964 1075887 - 1075902 + g 79 -2.6 -5.2696 | gap 1, overlap 1075881 1075883 AACTCTATAGGCGGC GATGCCA TTG TGG-ATC TTTTTTCAATTTTAA TERM 965 1075930 - 1075943 + H 80 -6.7 -4.82901 | opp_overlap 1075923 TAACAACAGCCGCGT CGACA AGAT TGTCG TTTTTATCCCACAGC PAE1827 1076402 - 1077628 + | paREP12 PAE1829 1078511 - 1078266 - | hypothetical protein PAE1828 1077809 - 1078321 + | paREP13 PAE1830 1079076 - 1078546 - | hypothetical protein TERM 966 1078581 - 1078591 + g 77 -6.8 -4.56597 | opp_overlap 1078581 CTAGCTCTGTCAACA CTCC CAG GGAG TTTTTAAAAGGCGCA PAE1832 1079410 - 1079060 - | hypothetical protein PAE1833 1079479 - 1080054 + | 50S ribosomal protein L15e PAE1836 1081013 - 1080153 - | hypothetical protein TERM 967 1080193 - 1080178 - G 72 -6.8 -4.15222 | AGTTTTCTGAATAAA TGGCCC ACGA AGGCCA AATTAAACCCCCCTC PAE1837 1081740 - 1081006 - | hypothetical protein TERM 968 1083273 - 1083288 + G 81 -6 -4.77036 | opp_overlap 1083282 AGCCAACTGGGTCCT CGCGTC AAAC GCCGCG TTTTTACTCCTGGCG PAE1839 1081846 - 1083360 + | glycosyl transferase, putative PAE1840 1084777 - 1083329 - | lysyl-tRNA synthetase PAE1841 1085768 - 1084806 - | hypothetical protein TERM 969 1085100 - 1085082 - G 84 -7.4 -4.72272 | GTCCCCTATTAAAAA GACTCGGT CAA ACTGAGTC TCAAAAGTAACTGGG PAE1842 1086431 - 1085796 - | hypothetical protein TERM 970 1086016 - 1086038 + g 71 -2.5 -5.00616 | overlap 1086018 AGCGCCACGCGCCAC CGGGAGGGG CCCAC CTCCGCCAG TTTTTTCAAGGCCAG PAE1844 1087879 - 1086452 - | hypothetical protein TERM 971 1087756 - 1087744 - G 72 -4.7 -4.65916 | CGGATTCGAACAAAA CGGCG GGC CCCCG GGCGTACATCACTTG PAE1846 1088978 - 1088079 - | hypothetical protein TERM 972 1088776 - 1088801 + g 76 -7.4 -4.1552 | opp_overlap 1088772, overlap 1088777 TACAGCCTAAACCGC CACGCCGGGG GCTTAA CCCCGGCGAA TTTATTCCAAAACTG TERM 973 1088777 - 1088800 + g 72 -10.9 -3.08991 | opp_overlap 1088772, overlap 1088776 ACAGCCTAAACCGCC ACGCCGGGG GCTTAA CCCCGGCGA ATTTATTCCAAAACT PAE1848 1089396 - 1089001 - | hypothetical protein TERM 974 1089861 - 1089836 - H 76 -11.8 -2.71712 | overlap 1089835 CCCCTTCCCCGAAAG GGATGGCGGC CGATCC GCCGCCGTCC GCCCGAGGGTGGGGG PAE1850 1090039 - 1090698 + | rRNA intron-encoded homing endonuclease TERM 975 1090762 - 1090780 + F 95 -13.1 -4.10657 | opp_overlap 1090774 GGGGCTACCCCGAGT GCCGGGC GAAGA GCCCGGC TTTTGCCCGGTCTAA TERM 976 1090943 - 1090923 - f 79 -10.3 -3.53343 | overlap 1090924 AAGTCGCTCCTGAAA TCCCCGGGC TCA ACCCGGGGG CGGGGGGCGATACTG TERM 977 1090942 - 1090924 - f 83 -13.8 -2.71791 | overlap 1090923 AGTCGCTCCTGAAAT CCCCGGGC TCA ACCCGGGG GCGGGGGGCGATACT TERM 978 1092163 - 1092193 + F 78 -12.5 -2.69151 | opp_overlap 1092167, overlap 1092165 GGGGGGAGCCCAAAC CAAATCCCCGCGG GAAAA CCGCGGGGAGATG TGGTGTATGGGCCCG TERM 979 1092189 - 1092167 - f 100 -16.3 -4.07246 | opp_overlap 1092165 1092163 GGAGCCCAAACCAAA TCCCCGCGG GAAAA CCGCGGGGA GATGTGGTGTATGGG TERM 980 1092296 - 1092284 - f 79 -10.5 -3.59979 | GCCCCGTAGGCGAAA CCGCC CGT GGCGG AGTCCCGGAGTCCCG TERM 981 1092362 - 1092344 - f 93 -16 -3.02511 | TTTACCGTGGGAATA TGCCGGCC ACT GGCCGGCA AGGCTAAGCACGTCC TERM 982 1092434 - 1092423 - f 74 -7.2 -4.2354 | GAAAGCTGAAAAGAA CCCC GGAA GGGG GGTGAAAAGAGCCTG TERM 983 1092518 - 1092505 - f 80 -9.5 -3.90112 | CCCTCCCGAAGGAAA CCCCG GTGA CGGGG GAGTACGAGGGAGGG TERM 984 1093078 - 1093064 - f 72 -8.5 -3.66356 | AGTGTCAATCTCAAA GGGCG TCCCC CGCCC AAGACAGCGGGGCCG TERM 985 1093284 - 1093250 - f 74 -10.7 -3.28712 | gap 2 GGCCGTGGGGCAGAA GCCGGGCCGTGAGGTCC GGT GGACC-CGCGGCC-GAC GAAGATCCCGGCGGT TERM 986 1093650 - 1093624 - f 79 -9.3 -4.07568 | overlap 1093639 TGGGGCCCGTGAAAA GGGGACGGGGA ACGAG CCCCCGCGCCC GTACCGAGAACCGAC TERM 987 1094181 - 1094164 - f 72 -8.3 -3.76224 | GTGGGAGCGATGAAA CGGGGTC TCCG GGCCCCG TGGATGCGACCCTGG TERM 988 1094447 - 1094417 - f 82 -11.1 -3.48276 | gap 1, overlap 1094403 1094418 CCGGGGCCTAGAGAA CGCTCGTGCCCCCA CCAG TGGGGGC-CGGGCA TGACAGAAAAGTTAC TERM 989 1094446 - 1094418 - f 78 -12.4 -2.68823 | gap 1, overlap 1094403 1094417 CGGGGCCTAGAGAAC GCTCGTGCCCCCA CCAG TGGGGGC-CGGGC ATGACAGAAAAGTTA TERM 990 1095457 - 1095472 + G 78 -5.4 -4.87626 | gap 1, overlap 1095457 TGACACGCGCGGAGA CCCC-TC GGC GATGGGG TTTTTCGTATTGGCC TERM 991 1095636 - 1095650 + G 75 -7 -4.41716 | overlap 1095606 GTAGCGTCTCCGGCG CGGCGG CCC CCGGCG TTTATTATATCGTAT TERM 992 1095980 - 1095994 + G 76 -7.8 -4.18018 | opp_overlap 1095979 1095982, overlap 1095982 GCAGTGGAGAGGAAG TACGGC TCC GCCGTG TTTTACCTCCAGCCC PAE1856 1095290 - 1098232 + | hypothetical protein TERM 993 1098585 - 1098612 + GF 83 -9.8 -4.04206 | opp_overlap 1098578 CAACGATAGGTACTA CGCCATATTGCC CGGG GGCAACACGGCG TTTGTATACGAATGG TERM 994 1098957 - 1098970 + GF 75 -9.5 -3.60627 | CGAGTGGATTATTAT GGCCG ACGA CGGCC TTTACACTGCCGTGA PAE1857 1098229 - 1099263 + | hypothetical protein TERM 995 1099411 - 1099399 - gT 76 -4.8 -4.85599 | TTCAGGGGAGAAAAA CGCA GTAGT TGCG GTGATTAAAAGCGGC TERM 996 1099951 - 1099964 + GT 75 -9.5 -3.64703 | CGAGTGGATTATTAT GGCCG ACGA CGGCC TTTACGTCGCAAAGA PAE1858 1099235 - 1100269 + | hypothetical protein TERM 997 1100577 - 1100563 - T 91 -11.4 -4.25283 | opp_overlap 1100570 AGCTCTTGAGGAAAA GGCCAG GGG CTGGCC GCGGGCTCGCCTTAT PAE1861 1101385 - 1100615 - | ankyrin repeat-containing protein TERM 998 1100703 - 1100723 + g 73 -11.9 -2.59668 | overlap 1100702 1100719 TCAGCCGCCAGCCCG TCCTCTGCG TAG TGCAGAGGA GTTCTCCCCATATTA TERM 999 1101684 - 1101715 + G 72 -6.5 -4.41348 | gap 1, overlap 1101685 GTGTTATATATATCT GCGCCTTC-CCGGC GTTGG GACGGTGAAGGCGA TTTATTTAAAGGCGC TERM 1000 1101685 - 1101714 + G 70 -10 -3.24488 | gap 1, overlap 1101684 TGTTATATATATCTG CGCCTTC-CCGGC GTTGG GACGGTGAAGGCG ATTTATTTAAAGGCG TERM 1001 1102266 - 1102256 - g 88 -8.2 -4.59773 | opp_overlap 1102257, overlap 1102257 GCCCACCGCCAAAAA CCCC CTC GGGG AATTCGGAGAGGTTG PAE1862 1101537 - 1102640 + | hypothetical protein PAE1863 1102654 - 1103301 + | hypothetical protein TERM 1002 1103678 - 1103703 + GF 71 -2.5 -5.00884 | gap 1, opp_overlap 1103701, overlap 1103679 1103680 GTCTTGTATTACGTG GTCCTC-TCTCC CGA GGAGAAGAGGCG TTTTTTAAAAGCGCT PAE1864 1103588 - 1103932 + | paREP7 PAE1865 1103829 - 1104122 + | paREP7 TERM 1003 1104231 - 1104250 + G 75 -11.4 -3.05384 | opp_overlap 1104225 1104228 TTGCAAAAAGAGGCA GTCCCCGT ACTG ACGGGGGC TTGGATAGGAGACGA PAE1867 1104153 - 1104314 + | paREP7 TERM 1004 1104616 - 1104628 + T 70 -9.1 -3.41125 | opp_overlap 1104610 GCGTTAAAAGCCCCA GCCAG AGT CTGGC TTCTGGCTGTGTCGG TERM 1005 1104657 - 1104688 + T 73 -10.8 -3.02324 | gap 1 GGCTGTAAGTGTCTT GTGGGCT-GGCGGAC GCG GCCTGCCTGGCCCAC TGTAGTTTGGCTCGG PAE1869 1105259 - 1104840 - | paREP11 PAE1870 1105647 - 1105246 - | hypothetical protein TERM 1006 1105474 - 1105452 - G 93 -14.8 -3.05769 | opp_overlap 1105452 1105455, overlap 1105445 CTCCGAAAGCATAGA CGTCGGCGGG GAG CCCGGCGACG TTTTCCACGGCCTCC TERM 1007 1105452 - 1105474 + g 100 -14.8 -4.08216 | opp_overlap 1105445 1105452, overlap 1105455 CTCCGAAAGCATAGA CGTCGGCGGG GAG CCCGGCGACG TTTTCCACGGCCTCC TERM 1008 1105775 - 1105810 + H 95 -13.2 -3.85698 | gap 1, overlap 1105777 GCAACCCCCTTGGCC TGGCGCCGACGGCGGCG TTT CCCCGCCTTCGGC-CCG TTTGTAGGGGCCGCC TERM 1009 1105777 - 1105809 + H 87 -14.7 -2.91276 | overlap 1105775 AACCCCCTTGGCCTG GCGCCGACGGCGGCG TTT CCCCGCCTTCGGCCC GTTTGTAGGGGCCGC TERM 1010 1105982 - 1105972 - H 74 -6.8 -4.30576 | CTCTGACTACTAAAA GACC GTC GGTC AGGACCTGAATTCGG PAE1872 1106809 - 1107858 + | isocitrate lyase TERM 1011 1107930 - 1107899 - g 78 -9.4 -3.95073 | gap 1 CGTGATATGTATAAA GCCCGGC-GCCTCCA TCC TGGACGCCGCCAAGC TCATGGCCCAGCGGA PAE1873 1107855 - 1108283 + | hypothetical protein PAE1875 1108295 - 1108735 + | paREP7 PAE1876 1108868 - 1109605 + | hypothetical protein TERM 1012 1109617 - 1109634 + F 73 -2 -5.24129 | ATAGAGCCATACACC TTGTGC GTGTAG GTACAA TTTTTTGTACAGGAC TERM 1013 1110071 - 1110050 - g 76 -9.3 -3.78934 | opp_overlap 1110048 1110053 TTTTGTCTAGAATAA GCGGCGACG TTCT CAACGCCGC TATTTACTTGTTTTT PAE1878 1109800 - 1110477 + | ATP binding protein, degenerate TERM 1014 1110703 - 1110684 - f 93 -10.7 -4.56597 | opp_overlap 1110672, overlap 1110662 CGTCGTCGTTAAAAA CGCCGTG TTGGGC CACGGCG GTAGGGCGGTGTTAC PAE1882 1111447 - 1111914 + | hypothetical protein PAE1883 1112643 - 1111939 - | hypothetical protein TERM 1015 1112784 - 1112801 + r 83 -6.3 -5.09173 | gap 1 CTCTAATCTCCTCGG GGC-CAAG GGG CTTGCGCC TTTTTTAACGTGTTA PAE1884 1113727 - 1112828 - | phosphate permease, conjectural TERM 1016 1112906 - 1112877 - G 77 -6.4 -4.62872 | gap 1, overlap 1112891 ACTAACGCCGAAAAA GCCGCTC-CCAGC AACGG GCTGGTGAGCCAC CCGATAAATATCCTC PAE1888 1115561 - 1114128 - | multicopper oxidase TERM 1017 1114950 - 1114934 - G 72 -10.1 -3.39844 | opp_overlap 1114934 1114946, overlap 1114932 CTGATAGTTTAAATA CGGCGTC TTT AACGCCG TTTACTAAAACAGCG TERM 1018 1114934 - 1114950 + g 76 -9.4 -3.72576 | opp_overlap 1114934 1114932, overlap 1114946 CTGATAGTTTAAATA CGGCGT CTTTA ACGCCG TTTACTAAAACAGCG TERM 1019 1115796 - 1115809 + H 70 -9.5 -2.9652 | ACTCGCCTTCTGCCC GCGCC AGGT GGCGC TAATTCCTTTTATGC TERM 1020 1115844 - 1115888 + H 73 -4.4 -4.75308 | gap 2, opp_overlap 1115836, overlap 1115847 CTCTAAACTGTCCCA CTGCTTTAAGCGTTGGGCAGAA CTG TTGTGCCCC-CGCGTAAAG-AG TTTTTAAATATTGGT PAE1890 1115856 - 1116137 + | paREP6 PAE1891 1116137 - 1116712 + | hypothetical protein PAE1892 1116660 - 1116869 + | paREP6 PAE1893 1117406 - 1117002 - | hypothetical protein PAE1894 1117761 - 1117375 - | hypothetical protein TERM 1021 1118864 - 1118845 - g 70 -5 -4.57474 | opp_overlap 1118862 CGAATTCATACAAAA GGCTTG TCCACGCC CAAGCC GCCTTTGCGGGGCTG PAE1895 1118721 - 1119116 + | hypothetical protein TERM 1022 1119445 - 1119457 + G 100 -7.7 -5.46657 | TCATCTGGGTTGGGC CGCAA GAG TTGCG TTTTTTCTTCGCCTC PAE1897 1119201 - 1119815 + | hypothetical protein TERM 1023 1119834 - 1119859 + F 71 -10.5 -2.71712 | overlap 1119833 1119854 TTGATATACACGGCT CCGTCTATTAG CAGA CTGATAGGCGG CTTTACAGCCCGCCG PAE1899 1120067 - 1120240 + | hypothetical protein TERM 1024 1120671 - 1120681 + G 77 -8.2 -4.08216 | opp_overlap 1120662 1120665 1120670, overlap 1120664 TATAGACGAGCAACG GCGC GAT GCGC TTTTAGAAAAACTAG PAE1900 1120327 - 1121412 + | paREP2b TERM 1025 1121430 - 1121404 - T 86 -9.4 -4.46212 | overlap 1121406 1121413 1121414 TGGCTGAGGACAAAA GCCGAGTAACGC TCC GCCTTACTCGCC GAGCACGCGCCTAGT TERM 1026 1121428 - 1121406 - T 70 -10.6 -2.56122 | overlap 1121404 1121413 1121414 GCTGAGGACAAAAGC CGAGTAACGC TCC GCCTTACTCG CCGAGCACGCGCCTA PAE1901 1121901 - 1121422 - | paREP8 PAE1902 1121999 - 1122388 + | hypothetical protein PAE1903 1122364 - 1122705 + | hypothetical protein PAE1905 1123244 - 1122765 - | hypothetical protein PAE1906 1123510 - 1123244 - | hypothetical protein PAE1907 1123761 - 1123555 - | hypothetical protein PAE1909 1123808 - 1124260 + | hypothetical protein TERM 1027 1124463 - 1124479 + G 70 -4.3 -4.57073 | TGTCTTTCGCCATTT CGCCGTT TTT AGCGCCG TTTTTAAAAGACGTG PAE1910 1124285 - 1124956 + | hypothetical protein PAE1912 1126101 - 1124995 - | chorismate synthase TERM 1028 1125278 - 1125302 + g 93 -12.1 -3.97709 | CCTATTTTATTGCTC TCTAGGGCGGG CCT CCCGCTCTTGA TTATTATTGGGTCGT PAE1913 1126886 - 1126098 - | shikimate 5-dehydrogenase (aroE) TERM 1029 1126442 - 1126452 + g 88 -8.2 -4.65838 | GCGCCTCAGCCCTCT CCGC CGT GCGG TTTTTGACGTATATC PAE1915 1127000 - 1127557 + | hypothetical protein PAE1916 1127679 - 1128632 + | hypothetical protein PAE1917 1128676 - 1129392 + | pyrroline-5-carboxylate reductase PAE1918 1129785 - 1129375 - | mutT/nudix family protein TERM 1030 1130306 - 1130316 + G 77 -6.8 -4.56597 | TAGATTAATTGTGGC TGGG GAT CCCA TTTTTCAAAAACCCG TERM 1031 1130350 - 1130373 + G 70 -6.6 -4.07568 | opp_overlap 1130349 ACTCGGAAAAAGACG GGGCAACTCT CCTA AGAGAGGCCC TTTTGGGGGAGGAGA PAE1920 1129833 - 1130948 + | phoH like protein TERM 1032 1131933 - 1131915 - g 76 -11 -3.30159 | overlap 1131927 1131928 CCAAGGCTTTTAGAA GAGACGCC TAA AGCGTCTC ACGTTGGGAGGCGGG PAE1921 1130976 - 1131968 + | putative alcohol dehydrogenase PAE1922 1132970 - 1132026 - | UDP-glucose 4-epimerase (galE-1) TERM 1033 1133033 - 1133020 - R 71 -3.7 -4.77173 | overlap 1133016 CGCTTATAAAATAAA GCACG GCGG CGGGC CACGATTTAGCCACT PAE1924 1134202 - 1133000 - | 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) TERM 1034 1133322 - 1133299 - GR 85 -13.8 -2.71011 | opp_overlap 1133286 ACTCCTCCTCAACCA TGCCCGCCGC CAAG GCGGTGGGCA TGACTAAATCGGGAT aroB 1135211 - 1134174 - | 3-dehydroquinate synthase TERM 1035 1134574 - 1134590 + gr 77 -9.4 -3.84451 | opp_overlap 1134568 1134567 TCCTCAAATTCGTCG GCCTCC ACGAC GGAGGC TTTGAGTTTAAGCGA PAE1927 1136152 - 1135208 - | transketolase (C terminal section) PAE1929 1136949 - 1136146 - | transketolase (N terminal section) TERM 1036 1136211 - 1136240 + g 70 -3.6 -4.70626 | GCTTCGCCGTGTCTT CAATTTGGGCAA TTCCCC TTCCCCTAATTG TTTTTGCAATTATTA PAE1931 1137050 - 1138000 + | tyrosyl-tRNA synthetase TERM 1037 1138595 - 1138606 + G 81 -7.2 -4.63218 | AAAAACTGGGACGCG CCGG CAAG CCGG TTTTGTTAAAGAGGG PAE1932 1138021 - 1139007 + | 3-deoxy-7-phosphoheptulonate synthase PAE1934 1139570 - 1139004 - | hypothetical protein PAE1935 1141723 - 1139552 - | carbon monoxide dehydrogenase large subunit, conjectural PAE1936 1142163 - 1141720 - | carbon monoxide dehydrogenase small subunit, conjectural PAE1939 1142978 - 1142160 - | carbon monoxide dehydrogenase medium subunit, conjectural PAE1941 1143791 - 1143009 - | chorismate mutase, conjectural PAE1943 1144392 - 1143859 - | paREP5 TERM 1038 1144207 - 1144193 - G 81 -8.6 -4.29738 | TGATAGCTAGCAAAA CCGTTT AAT AAACGG CTAAACCTCTCATCT PAE1944 1144933 - 1144439 - | hypothetical protein PAE1946 1147167 - 1144930 - | hypothetical protein PAE1948 1147835 - 1147164 - | hypothetical protein PAE1949 1148155 - 1147898 - | paREP11 TERM 1039 1148233 - 1148249 + r 72 -6.5 -4.21607 | GCCGCTTGACTAAGC CGTCGAG AGT CTCCACG TTTCTCTTCACTAAG PAE1951 1148673 - 1148269 - | hypothetical protein PAE1954 1149048 - 1148686 - | hypothetical protein TERM 1040 1148718 - 1148738 + g 74 -8.2 -3.8969 | opp_overlap 1148730, overlap 1148719 CTCCCAGCCCTAGCG CCCTGGCC ACAAC GGCCAGGA TTATTATATAAATCC TERM 1041 1148719 - 1148737 + g 75 -11.7 -2.93332 | opp_overlap 1148730, overlap 1148718 TCCCAGCCCTAGCGC CCTGGCC ACAAC GGCCAGG ATTATTATATAAATC TERM 1042 1148767 - 1148755 - G 70 -10.5 -2.74244 | overlap 1148730 1148752 1148751 TATTATATAAATCCA CGCCG CCG CGGCG AATAGATACATCGTC TERM 1043 1149011 - 1148985 - G 77 -10 -3.60587 | opp_overlap 1148987, overlap 1148986 AGAAAAGGTATATAA GGGGCGCCAGGG CGG CGATGACGCCCC CCGCGGCGGCTATTA TERM 1044 1149068 - 1149056 - R 79 -9.1 -4.13767 | opp_overlap 1149053 1149056 CCGTTCATGTTAAAA CAGCC AGA GGCTG TAGTTGTTCGTCGCC PAE1955 1149451 - 1149050 - | hypothetical protein PAE1956 1150721 - 1149483 - | hypothetical protein PAE1957 1151329 - 1150721 - | hypothetical protein TERM 1045 1150954 - 1150970 + g 70 -5.7 -4.30978 | TTATCAGTTTGGCGC CGGAGCC CGT GGTCCCG TTTTGATAAGTTACA PAE1958 1151396 - 1151905 + | hypothetical protein PAE1960 1152874 - 1151969 - | 3-dehydroquinate dehydratase/chorismate mutase TERM 1046 1152613 - 1152623 + g 70 -6.8 -4.03234 | TGTAGTGCGGGTTTA GCTC CAG GAGC TTTCTGTACAAGGCC TERM 1047 1152795 - 1152809 + g 88 -8.5 -4.60797 | TCTAGACAGGTCACG GGCGC CTCCA GCGCC TTTTCTATATCGCGC PAE1962 1153749 - 1152886 - | hypothetical protein TERM 1048 1153992 - 1154013 + G 78 -9.3 -3.87956 | TCGTGGCGGTGGCGG GCGGCCGGC ACGG GCTGGCGGC TTTAATGTGGATTTT TERM 1049 1154314 - 1154327 + G 72 -6.7 -4.2687 | GCTAGAGCTCTCTCC CAACG TCGC CGTTG TTTATAGTTTTTCAA PAE1964 1153763 - 1154755 + | aspartate aminotransferase (aspC), conjectural PAE1966a 1154850 - 1154773 - | hypothetical protein TERM 1050 1155593 - 1155605 + G 70 -6.9 -4.07687 | AAGAGGCGGGGATTA GCGTC ACT GGCGC TTTTGACGACGCAGT PAE1967 1155217 - 1156032 + | shikimate kinase PAE1968 1158065 - 1156011 - | alpha-glucosidase PAE1969 1158395 - 1158084 - | hypothetical protein TERM 1051 1159308 - 1159290 - g 75 -5.2 -4.62069 | AAAAATAGGAGAAAA CGGCGC TGAAATT ACGCCG AAGTCTGGATTTCCC rpl3p 1158466 - 1159482 + | 50S ribosomal protein L3P TERM 1052 1159615 - 1159641 + G 72 -5.9 -4.38154 | CATTGACGGCGCCTA TGTAGCGGA TATTGAGGC TCCGCTGCA TTTTCTAGAGCCTAT rpl4lp 1159502 - 1160353 + | 50S ribosomal protein L4P PAE1972 1160350 - 1160595 + | ribosomal protein L23 TERM 1053 1160884 - 1160896 + T 79 -10.5 -3.55203 | opp_overlap 1160882 GTCGTATCAACTAGG GGGCG CCA CGCCC TTTACGCAGAATTTT PAE1974 1161673 - 1161311 - | hypothetical protein TERM 1054 1161714 - 1161729 + r 72 -5.4 -4.43012 | opp_overlap 1161705 AAAAGTTACGTGGCG TAGTGG CCTA CCGCTA TTTTCCTCTTCACCT PAE1975 1162240 - 1161704 - | hypothetical protein TERM 1055 1161957 - 1161943 - G 75 -7 -4.34711 | opp_overlap 1161942 1161944, overlap 1161944 AAAAGTAAGGCAAAA CCCCCG AAA CGGGGT ATTTCAAGTCCGCGG TERM 1056 1161944 - 1161956 + g 76 -10.5 -3.38046 | opp_overlap 1161944 1161943, overlap 1161942 AAAGTAAGGCAAAAC CCCCG AAA CGGGG TATTTCAAGTCCGCG TERM 1057 1161956 - 1161944 - G 74 -10.5 -3.192 | opp_overlap 1161942 1161944, overlap 1161943 AAAGTAAGGCAAAAC CCCCG AAA CGGGG TATTTCAAGTCCGCG TERM 1058 1162490 - 1162474 - g 74 -2.2 -5.08824 | opp_overlap 1162460 1162459, overlap 1162477 1162478 TCGCTAGTTAAAAAA CTAGCC GGTTT AGCCAG GCAACAGAGGCACAC PAE1976 1162297 - 1162899 + | hypothetical protein PAE1978 1163002 - 1163280 + | DNA-directed RNA polymerase subunit L (rpoL) PAE1979 1163277 - 1163942 + | ribosome biogenesis protein PAE1981 1163939 - 1164688 + | hypothetical protein TERM 1059 1164724 - 1164710 - f 77 -3.5 -5.19916 | overlap 1164711 AAAAGACGTAAAAAA CTGGC TCAAT GCCAA AGGTTTGGCGGCACT PAE1982 1164729 - 1165253 + | aerolysin, part 1, authentic frameshift TERM 1060 1165605 - 1165572 - g 78 -7.4 -4.34402 | gap 1, overlap 1165573 GGCGGTAGATCAAAA CGGCTCCGTCCCCAC GTGGA GTAGCGACGG-GCCA GAGGTGGACACCGCG PAE1983 1165246 - 1165890 + | aerolysin, part 2, authentic frameshift TERM 1061 1166301 - 1166331 + G 81 -13.2 -2.62184 | opp_overlap 1166289, overlap 1166294 ACACCGCGGGCGCAG TTGGCGCCTTTGCC CAC GGCATGGGCGCCAC TGATATAGCCGCAGC PAE1984 1165919 - 1167166 + | 3-isopropylmalate dehydratase large subunit PAE1985 1168093 - 1167176 - | ornithine carbamoyltransferase TERM 1062 1167843 - 1167855 + g 73 -9.1 -3.6003 | opp_overlap 1167831 GTATCGGCCACGGTC TCGCC CCT GGCGA TTTGGAGCTCGTTTG PAE1986 1169476 - 1168139 - | 2-isopropylmalate synthase TERM 1063 1168670 - 1168648 - G 70 -4.7 -4.52589 | opp_overlap 1168648 1168649 1168668, overlap 1168649 CCGGGTTAGACAAAA CGCCGGCTT GATGG ACGCCGGCC TTGTGAGTAAAGGCG PAE1989 1169631 - 1171418 + | hypothetical protein PAE1990 1171408 - 1171875 + | archaemetzincin-like protein leuD 1172343 - 1171858 - | 3-isopropylmalate dehydratase small subunit PAE1993 1172492 - 1173586 + | trans-homoaconitate synthase PAE1995 1173680 - 1174552 + | 3-isopropylmalate dehydrogenase (leuB) TERM 1064 1175119 - 1175096 - g 70 -3.7 -4.68994 | opp_overlap 1175096, overlap 1175098 ACGAGTATTCAAAAA TAGCGGGGA GAAACG CCCCCGCCG TGTTCACCTCAAAGC TERM 1065 1175117 - 1175098 - g 74 -8.5 -3.95883 | opp_overlap 1175096, overlap 1175096 GAGTATTCAAAAATA GCGGGGA GAAACG CCCCCGC CGTGTTCACCTCAAA TERM 1066 1175406 - 1175396 - g 77 -6.8 -4.46212 | opp_overlap 1175396, overlap 1175402 TGCGTTATTACAAAA GGGA AAT TCCC TTTGAGAAAATACCC PAE1996 1174606 - 1175853 + | glutamate dehydrogenase PAE1998 1176056 - 1175850 - | hypothetical protein TERM 1067 1176072 - 1176091 + r 91 -8.6 -4.91852 | gap 1, opp_overlap 1176071 GTGGAGATAAAAGCC CGC-GGCTT TAA AAGCCTGCG TTTATTTTTAATGAG PAE1999 1176471 - 1176079 - | hypothetical protein TERM 1068 1176171 - 1176188 + g 78 -5.5 -4.82901 | opp_overlap 1176160 AAAAGGCCTTGTTGT GCGGC CTCAACGC GCCGC TTTTTGTCGCGGGGA PAE2000 1176530 - 1177219 + | glutamine transport system permease protein, putative PAE2001 1177222 - 1177956 + | glutamine transport ATP-binding PAE2002 1177979 - 1179838 + | molybdopterin oxidoreductase TERM 1069 1179881 - 1179865 - f 75 -2.9 -5.15634 | CACTCGATTAAAAAA CGTGTTC GAC AATCACG TCCACTGCCACGAAT PAE2003 1179866 - 1180570 + | hypothetical protein TERM 1070 1181235 - 1181268 + G 78 -7.5 -4.4261 | gap 1, overlap 1181253 CGTCCCCCAGGGCTG CGCGGTGCACCACG GAGGCGG TGTGGT-CACCGTG TTTTCCTCTTCCGCG PAE2004 1180558 - 1181397 + | serine/threonine specific protein phosphatase TERM 1071 1183387 - 1183367 - g 77 -6.1 -4.68384 | opp_overlap 1183367 1183370, overlap 1183368 ACGCATTGAAGAAAA CCACTGCGA GTT TCCCAGTGA TTGGCTACGTTACAC TERM 1072 1183605 - 1183615 + G 75 -5.4 -4.59773 | CAGTATCTCATGTTA TTGG ATG CCAA TTTTTAGCGCTGAGG PAE2005 1181623 - 1183776 + | hypothetical protein PAE2006 1183777 - 1184349 + | hypothetical protein dcd 1184917 - 1184387 - | deoxycytidine triphosphate deaminase TERM 1073 1185078 - 1185046 - g 78 -7.8 -4.35116 | gap 1, opp_overlap 1185046 1185048 GAGCCGATATCAAAA TATCTCAGCCACCCA GTGG TCGGCGGCTG-GATA TGGTTTATGATTATC PAE2010 1185010 - 1185516 + | hypothetical protein PAE2011 1185785 - 1185513 - | hypothetical protein PAE2012 1185828 - 1186274 + | methylated-DNA--[protein]-cysteine S-methyltransferase (ogt) PAE2013 1186311 - 1186538 + | ferredoxin PAE2015 1186735 - 1186914 + | hypothetical protein PAE2017 1186946 - 1187596 + | phosphoserine phosphatase (serB) PAE2019 1187678 - 1188571 + | hypothetical protein PAE2020 1188556 - 1189260 + | hypothetical protein PAE2021 1189956 - 1189498 - | riboflavin synthase PAE2022 1190002 - 1190370 + | CopG family protein PAE2024 1190373 - 1190741 + | hypothetical protein TERM 1074 1191197 - 1191226 + G 81 -12.1 -3.18681 | opp_overlap 1191191 1191190 ATCTACAAGGCGCTT TATGAGGCGGGGC TGGA GCCCGGCCCCATA TTAGTGCAGTTCGGC TERM 1075 1191344 - 1191357 + G 70 -3.9 -4.72272 | AGGGGGTACTTCGGC GATTT GACA AAATC TTTTTACTACGGAGA TERM 1076 1191591 - 1191575 - g 86 -13.7 -2.87881 | opp_overlap 1191575, overlap 1191563 GAAGCGCCGGACATA TCCCCCG GAT CGGGGGA TCTCCTACAGCCCGG TERM 1077 1191575 - 1191591 + G 85 -13.7 -2.78384 | opp_overlap 1191575 1191563 GAAGCGCCGGACATA TCCCCCG GAT CGGGGGA TCTCCTACAGCCCGG PAE2025 1190738 - 1191709 + | xaa-Pro dipeptidase, putative PAE2027 1192045 - 1191710 - | paREP10, authentic frameshift TERM 1078 1191939 - 1191915 - G 90 -7.7 -4.7878 | TAGCGACAAAACAAA CGGCGGCAACC CGA GGTCGACGACG CCCCCGCCCGGCGCC PAE2028 1193801 - 1192251 - | N-methylhydantoinase B (hyuB) PAE2030 1195741 - 1193798 - | N-methylhydantoinase A (hyuA) TERM 1079 1194354 - 1194340 - G 79 -12.8 -3.02144 | opp_overlap 1194329 1194349, overlap 1194323 CCAGCGCCGTGAATA CCCCGG GCT CCGGGG GGATGACCACGGTTC TERM 1080 1195320 - 1195288 - G 70 -6.9 -4.14397 | AGTGTAGAAACGAAA CCGCCACAGACAC AACTCCA GCGTCGGCGGCAG TTTTAGCGTTGCGGC PAE2031 1195907 - 1196233 + | hypothetical protein PAE2032 1196824 - 1196417 - | paREP11 PAE2034 1197217 - 1196978 - | hypothetical protein TERM 1081 1197274 - 1197285 + H 71 -7.2 -4.08692 | overlap 1197263 CTACCGCCTTTTCAG GCCC TTGT GGGC TTTTACCACAGCTTC TERM 1082 1198285 - 1198269 - g 82 -7.9 -4.49556 | overlap 1198265 CCTTGAGGAAAGAAA CGCCTTG TTC CTAGGCG TAGAGGTAAACGCCG PAE2035 1197484 - 1198818 + | D-lactate dehydrogenase PAE2037 1199275 - 1198796 - | hypothetical protein PAE2038 1200204 - 1199272 - | hypothetical protein TERM 1083 1201063 - 1201048 - g 77 -6 -4.63928 | AGACGACGTGAAAAA GGCGGC GGTG GCAGCC CTGGCGCACAGAATA PAE2039 1200242 - 1201147 + | moxR related protein PAE2040 1202058 - 1201144 - | hypothetical protein TERM 1084 1201759 - 1201717 - G 75 -5.2 -4.62872 | opp_overlap 1201755 AGTAAGCTGTAAAAA CGACCCGAGGCCCCACGCAG TAA CGGCGATAGACACCGGGGCG AGGGCTCTTTTTAAA TERM 1085 1201989 - 1201973 - G 95 -5.8 -5.41143 | gap 1, overlap 1201974 TATGCGGTAAAAAAA GCCC-CC AGGG GGTGGGC CGCAAACCGCAACGC TERM 1086 1201984 - 1201974 - G 72 -8.2 -3.83963 | overlap 1201973 ATGCGGTAAAAAAAG CCCC CAG GGGG TGGGCCGCAAACCGC PAE2041 1203536 - 1202055 - | hypothetical protein TERM 1087 1202321 - 1202295 - G 90 -9.4 -4.57353 | CCTCACGACATAAAA GCCTGGCTTGTC AAA AACAAGCCTAGC CGGCGCCTTGCCCAC TERM 1088 1203450 - 1203426 - G 70 -7 -4.13014 | overlap 1203427 CGGAGAGGCGGAAAA GCCGCTGGCG CCGCC CGGCAGAGGC CTGCCGGGGGCATAG TERM 1089 1203789 - 1203759 - R 88 -12.5 -3.53343 | AAGCCCCGGCTTAAA GGCCCCTGCCGCC TTCTC GACGGCAGTGACC TACGCGGCGCTCCTC PAE2042 1204227 - 1203865 - | hypothetical protein PAE2044 1205445 - 1204270 - | hypothetical protein PAE2046 1205735 - 1205442 - | hypothetical protein PAE2048 1205934 - 1206935 + | hypothetical protein PAE2050 1207186 - 1208043 + | hypothetical protein TERM 1090 1208087 - 1208105 + T 70 -9 -3.40299 | AATGAATTTTATATT TCTAAAAC ATA GTTTTAGA TTATCAATATGCTAA TERM 1091 1208887 - 1208900 + T 70 -2.4 -5.07971 | TTAGAAAACAATGAT TCCT CTTCCT AGGA TTTTTCCTTCTTTTA PAE2051 1209948 - 1208872 - | alcohol dehydrogenase (Zinc) TERM 1092 1209042 - 1209056 + g 81 -5.8 -4.80453 | ACGATCCTGTATATG TAGTTA TTA TAACTA TTTCTTTTCTAATAA TERM 1093 1210367 - 1210382 + G 70 -4.6 -4.51743 | overlap 1210369 CTCGTCGTTGTGGGC AAGGCC GAGA GGCCTG TTTATTTAGTGGTGC PAE2052 1210031 - 1211833 + | aldehyde ferredoxin oxidoreductase (aor) TERM 1094 1211827 - 1211845 + T 74 -3.8 -5.00616 | overlap 1211829 CTTCTTACTCTCACC GCCTTAAG TGG CTTAGGAC TTTTTTAAACGCCGC PAE2053 1213036 - 1211822 - | pleiotropic regulatory protein, conjectural TERM 1095 1212015 - 1212033 + g 81 -8.8 -4.36914 | overlap 1212016 AGGCCGTGGCCCTCT TGCCTCTG GAA CAGGGGCG TTTTGTAGAGGGGGA TERM 1096 1212016 - 1212032 + g 70 -10.1 -3.21934 | overlap 1212015 GGCCGTGGCCCTCTT GCCTCTG GAA CAGGGGC GTTTTGTAGAGGGGG PAE2054 1213066 - 1213503 + | hypothetical protein PAE2055 1213886 - 1213500 - | hypothetical protein PAE2056 1213966 - 1214178 + | hypothetical protein TERM 1097 1214197 - 1214209 + T 75 -6.2 -4.37886 | overlap 1214195 CACAAGGGGTATTCC GGCC TCTCT GGCC TTTTCTAAAAACTCC PAE2057 1214289 - 1214179 - | paREP6 part 2, authentic frameshift PAE2057a 1214391 - 1214311 - | paREP6 part 1, authentic frameshift TERM 1098 1214501 - 1214514 + Gr 70 -5.9 -4.15565 | overlap 1214502 GTCATTGTGACGAAG TGCCC AAAC GGGCG TTTTAACCTCATGCC PAE2059 1216144 - 1214918 - | hypothetical protein PAE2058 1214438 - 1214980 + | hypothetical protein TERM 1099 1215692 - 1215712 + gT 74 -3.1 -5.00616 | overlap 1215694 GTCTCCCGACCTCCC CCTGCCGAG GAT CTCGCCGAG TTTTTTAAAAACCCG TERM 1100 1215884 - 1215899 + gT 79 -10.4 -3.51329 | opp_overlap 1215874 1215863 CAACAGCCTCGCCGC GGCCTC GAGA GAGGCC TTGTGGTTAAGCCTG PAE2060 1217016 - 1216201 - | hypothetical protein PAE2062 1217382 - 1217017 - | hypothetical protein TERM 1101 1217347 - 1217332 - G 72 -8.2 -3.81339 | GACCCACAATGCAAA CGCCGC TAAG ACGGCG ACTAAAACGACCGTT PAE2063 1218432 - 1217956 - | paREP2b PAE2066 1218582 - 1218466 - | paREP2b TERM 1102 1218622 - 1218594 - R 79 -10.9 -3.32966 | overlap 1218582 1218592 1218595 ACACGGGAGAGAATA TCTCTTCGGCGCA CTC CGCGCCGAAGTGC GCGATGTCCGCTATA TERM 1103 1218621 - 1218595 - R 86 -14.4 -2.59298 | overlap 1218582 1218594 1218592 CACGGGAGAGAATAT CTCTTCGGCGCA CTC CGCGCCGAAGTG CGCGATGTCCGCTAT TERM 1104 1218672 - 1218685 + r 75 -9.5 -3.53224 | TTATCAGTTTTACGC CGCCG TCTA CGGCG TTTAGAAAGCGGCTA TERM 1105 1219046 - 1219033 - R 73 -9.5 -3.30124 | opp_overlap 1219036 1219037 GCGTAGGGCTCATAA CCGGG TTGC CCCGG GTTCAAATCCCGGCG TERM 1106 1219036 - 1219067 + r 78 -5 -4.93296 | gap 1, opp_overlap 1219033 1219054, overlap 1219037 TAGGGCTCATAACCG GGTTGCC-CCGGGTT CAA ATCCCGGCGGCGGCA TTTTTATAGTGATGA PAE2069 1219722 - 1219141 - | hypothetical protein TERM 1107 1220035 - 1220025 - g 74 -8.2 -3.86524 | opp_overlap 1220025 ATATGCTGTTAGAAA CGGC GTG GCCG TATATGGTCCAGCTC TERM 1108 1220078 - 1220106 + G 77 -6.5 -4.65916 | GAGGTTAAGGGCGAG GTGCTGCCGGAGG TGA CGGCCGGCAGGGC TTTTATTGGCATAGG PAE2070 1219748 - 1220965 + | acyl-CoA dehydrogenase TERM 1109 1221384 - 1221408 + G 88 -12.1 -3.57119 | opp_overlap 1221367 1221382 CGCCGACGGAATACC CCTAGCCGTGG CGG CCGCGTCTAGG TTTGAGGCCTCTCTA TERM 1110 1221621 - 1221597 - g 70 -6.3 -4.19371 | overlap 1221598 TAAAGCTCTAATAAA CCTCGCCTCAA AGG CCGGGGCGAGA ATAGTAGGCGCCTCT PAE2071 1221013 - 1221708 + | adenine phosphoribosyltransferase PAE2072 1221738 - 1222154 + | hypothetical protein TERM 1111 1222234 - 1222260 + G 100 -10.1 -5.24129 | opp_overlap 1222236 1222238 GGCGCTGTGGCTGAA GAGAGGGTGCG ACGTC CACGCCCTCTC TTTTTTGTACGGCCA TERM 1112 1222850 - 1222840 - g 88 -8.2 -4.61231 | opp_overlap 1222839 1222841, overlap 1222841 TGAGAGTTGTAAAAA CCGC CAC GCGG CGTTTATAGAGGCGG PAE2074 1222151 - 1222960 + | hypothetical protein PAE2075 1223829 - 1223053 - | nitrilase, conjectural TERM 1113 1224233 - 1224208 - g 75 -6.7 -4.4009 | gap 1, opp_overlap 1224209 1224215, overlap 1224209 TCGGAGTTTATAAAA CGCCTCTGGCCG TTG CGGCC-GCGGCC TTTATCGCCTACTTT TERM 1114 1224232 - 1224209 - g 70 -10.2 -3.23733 | gap 1, opp_overlap 1224209 1224215, overlap 1224208 CGGAGTTTATAAAAC GCCTCTGGCCG TTG CGGCC-GCGGC CTTTATCGCCTACTT TERM 1115 1224215 - 1224233 + G 72 -8 -3.91434 | opp_overlap 1224209 1224208, overlap 1224209 TTATAAAACGCCTCT GGCCGTTG CGG CCGCGGCC TTTATCGCCTACTTT PAE2077 1223994 - 1224614 + | hypothetical protein TERM 1116 1224618 - 1224636 + T 73 -7.4 -4.09685 | opp_overlap 1224618 GGATTGTTTTAACAA CGCCAG CATAGAC CTGGCG TTTTCAAGCATGGCG PAE2078 1225289 - 1224594 - | hypothetical protein TERM 1117 1225587 - 1225609 + G 77 -12 -3.26471 | opp_overlap 1225583 1225602, overlap 1225602 GCAGCTCACAATCAC GGGCGACG GCATAAA CGTCGCCC TTAATGTCGACGTGG PAE2079 1225366 - 1225878 + | hypothetical protein PAE2080 1226888 - 1226187 - | branched-chain amino acid transport ATP-binding protein TERM 1118 1226283 - 1226307 + g 79 -2.1 -5.2696 | CGAGACTAGTAAGTA GGCGTTG TCGGAGATTTC CAGCGCC TTTTTTGCGTTTTGC TERM 1119 1226651 - 1226671 + g 72 -8.9 -3.73072 | opp_overlap 1226652, overlap 1226652 1226661 1226663 TAGTCTGTTGTAAGT AGGCGAGGC CCA GCCTTGCCC TTTCGTGAGGCGGTT TERM 1120 1226652 - 1226670 + g 77 -12.4 -2.83522 | opp_overlap 1226652, overlap 1226651 1226661 1226663 AGTCTGTTGTAAGTA GGCGAGGC CCA GCCTTGCC CTTTCGTGAGGCGGT TERM 1121 1226661 - 1226684 + g 74 -2.3 -5.15634 | opp_overlap 1226652, overlap 1226652 1226651 1226663 TAAGTAGGCGAGGCC CAGCCTTGC CCTTTC GTGAGGCGG TTTTTTAGTCACGTC PAE2081 1227628 - 1226885 - | branched-chain amino acid transport ATP-binding protein PAE2082 1228994 - 1227600 - | branched-chain amino acid binding protein TERM 1122 1229212 - 1229225 + G 75 -4.5 -4.84359 | CACTAAAGTGCCTAA CTTCG CGCA CGGAG TTTTTATAAACCTCG TERM 1123 1229710 - 1229726 + G 76 -3.5 -4.95896 | opp_overlap 1229699, overlap 1229712 AATATCGGGCGCCGT CGCCGGC GTT GCGGGGG TTTTTCTGCCTTTGT PAE2083 1229054 - 1230013 + | branched-chain amino acid transport permease protein TERM 1124 1230332 - 1230357 + G 72 -7.5 -3.86194 | overlap 1230335 TCACGCCCCCAATGG CAGCCCTGCTG TTAT TAGCTGGGTTG TTTCTAGCGGGCATT TERM 1125 1230553 - 1230582 + G 70 -10 -3.26649 | gap 1 GAGGGCATTTTCGGA GGCGGCG-TCATG AGGGC CGTGGGCGCCGCC TTGGTCTCCGCATCT PAE2084 1230010 - 1231095 + | branched-chain amino acid transport permease protein PAE2087a 1232137 - 1231673 - | hypothetical protein PAE2085 1231206 - 1231751 + | peroxiredoxin TERM 1126 1231894 - 1231881 - GT 83 -9.5 -4.13343 | ACAAATCTGTCAAAA GCGGC AAAC GCCGC GAAGAACCACGCAGT PAE2089 1232892 - 1232161 - | short chain dehydrogenase family protein PAE2091 1232919 - 1233419 + | hypothetical protein PAE2095 1235175 - 1234087 - | hypothetical protein TERM 1127 1235488 - 1235478 - g 77 -8.2 -4.07089 | AAGAGAAATAGCAAA CGCC CTC GGCG TACAGCTGGAGTTAC TERM 1128 1235691 - 1235677 - g 70 -4.2 -4.63044 | ACTGATATAAATAAA GTGGAG GAC CTCTAC GGAAAAACCGTCGGG PAE2096 1235212 - 1236060 + | solute-binding family 3 protein TERM 1129 1236119 - 1236107 - g 70 -5.5 -4.36914 | overlap 1236108 GTGCCCTCTACAAAA CCTCC TAA GGAGA GGCCCTACGGGAAGA rps14P 1236092 - 1236256 + | 30S ribosomal protein S14P rps8p 1236291 - 1236683 + | 30S ribosomal protein S8P TERM 1130 1236950 - 1236931 - g 91 -11.4 -4.03234 | gap 1, opp_overlap 1236935 GGTGGGGTATAGAAA GCCCGCCGC AGT GCG-CGGGC TCCACCCCAGCGGCT rpl32e 1236716 - 1237174 + | 50S ribosomal protein L32e rpl19e 1237176 - 1237619 + | 50S ribosomal protein L19e TERM 1131 1237705 - 1237691 - g 86 -6.4 -5.04175 | opp_overlap 1237691 1237691 CTAATTACAGAAAAA GGAGAA AAC TCCTCC TGTCTAAAAAGCCAA rpl18p 1237621 - 1238238 + | 50S ribosomal protein L18P PAE2104 1238587 - 1238937 + | hypothetical protein PAE2105 1239501 - 1239214 - | paREP2b PAE2106 1239626 - 1239766 + | paREP2a PAE2108 1239797 - 1240054 + | paREP2a TERM 1132 1240657 - 1240678 + G 100 -15.9 -4.25256 | overlap 1240654 AACGAGAGGGGGACT CCGGATCCC TTGA GGGATCCGG TTATTTTACTGGCCG PAE2109 1240114 - 1242471 + | DNA polymerase II PAE2110 1242636 - 1242523 - | hypothetical protein TERM 1133 1242747 - 1242759 + G 91 -10.5 -4.18197 | GTCGCAGGGCTGTTT GGCGC AAG GCGCC TTTTACGTCCAAGAT PAE2111 1242694 - 1242858 + | paREP2a PAE2112 1244251 - 1243025 - | DNA primase TERM 1134 1243369 - 1243417 + g 85 -6.7 -4.7373 | CTTGCTGTGGGACGG GCTGTTGGGGAGGAGGCTG TTGTGGCGTCT CGGCCTTTTCTCCGGCGGC TTTTTGCTGGGCTAG PAE2116 1244477 - 1245352 + | methionine aminopeptidase PAE2117 1245393 - 1247042 + | thermosome (chaperonin) alpha subunit PAE2118 1247590 - 1247039 - | hypothetical protein PAE2119 1248611 - 1247580 - | conjugal transfer protein, conjectural TERM 1135 1248392 - 1248373 - GR 74 -2.8 -5.00616 | gap 1 CTGTCCTCTAAAAAA GGGC-TGAG CTC CTCAAGGCC CACTGTTGCCAGAAC PAE2120 1249062 - 1248583 - | transcription initiation factor IIB, conjectural PAE2121 1249190 - 1249504 + | hypothetical protein PAE2122 1249540 - 1249974 + | small nuclear ribonucleoprotein homolog (Sm-like) TERM 1136 1249989 - 1250003 + T 73 -4.2 -4.82901 | AAAATACATTGTACT GCGGTA GCT TGTCGC TTTTTCTCCCCGCGC PAE2125 1251043 - 1250204 - | paREP2a TERM 1137 1250411 - 1250396 - G 78 -8.2 -4.25104 | opp_overlap 1250396 CCCCTCCCACCAAAA GGCCCC TCTT AGGGCC CTTTCCATTGGCGCT TERM 1138 1250704 - 1250715 + g 70 -4.4 -4.55721 | CACCGTCTACAACGG CGTA ATAA TACG TTTTGTATCGCGTTT TERM 1139 1250930 - 1250917 - G 73 -9.5 -3.61398 | CGCCTTCTGCAATAA CGGCG TCAA CGCCG TAGAAGGCCCCTTGC PAE2127 1251410 - 1251033 - | paREP2a TERM 1140 1251912 - 1251897 - g 73 -11.8 -2.57564 | overlap 1251896 GCATTGGTTCATAAT GGCCGC CGCG GCGGCC GGGCTGATGGCGTGG TERM 1141 1252278 - 1252254 - g 83 -6.3 -4.98255 | opp_overlap 1252254, overlap 1252255 CGCCAACTACAAAAA GGCCCTTGAGG AGG CCTCTAAGGCG TGGTATGAGCAAAGA TERM 1142 1252277 - 1252255 - g 77 -9.8 -3.5823 | opp_overlap 1252254, overlap 1252254 GCCAACTACAAAAAG GCCCTTGAGG AGG CCTCTAAGGC GTGGTATGAGCAAAG PAE2128 1251568 - 1252596 + | paREP2b TERM 1143 1253977 - 1253959 - g 70 -11 -2.70932 | opp_overlap 1253955 GTGGGCTCTGAAGGA GCTTGGCC TTA AGCCAAGC TCAGTGTATAGGGGC TERM 1144 1254843 - 1254833 - g 72 -5.4 -4.55118 | opp_overlap 1254812 GAATCGTATACAAAA GCTT TGG AAGC CTTGGCACGTAGCTG PAE2129 1252640 - 1255615 + | paREP2b PAE2130 1258392 - 1255648 - | ATP-dependent helicase, putative TERM 1145 1256234 - 1256258 + g 76 -9.4 -3.85698 | opp_overlap 1256247, overlap 1256235 GCCTTTACGTCAAGT TTCTCAACGA AAATC TCGTTGAGAG TTTCTAACCCCGGGA TERM 1146 1256235 - 1256257 + g 71 -10.7 -2.91276 | opp_overlap 1256247, overlap 1256234 CCTTTACGTCAAGTT TCTCAACGA AAATC TCGTTGAGA GTTTCTAACCCCGGG TERM 1147 1256257 - 1256247 - G 70 -5.4 -4.4078 | opp_overlap 1256235 1256234 GTTTCTCAACGAAAA TCTC GTT GAGA GTTTCTAACCCCGGG PAE2131 1259159 - 1258554 - | fumarate hydratase class I beta subunit PAE2132 1259265 - 1260131 + | fumarate hydratase class I alpha subunit PAE2133 1260284 - 1260123 - | hypothetical protein TERM 1148 1260219 - 1260201 - G 74 -3 -5.00884 | opp_overlap 1260201 ACGGTTGGGAAAAAA CCCTCTAG ACA CTAGGCGG TCAATTTTTCTAACC PAE2134 1260314 - 1260736 + | hypothetical protein PAE2135 1261014 - 1260733 - | hypothetical protein PAE2136 1261160 - 1261300 + | paREP2a TERM 1149 1261335 - 1261356 + T 80 -12.3 -3.10164 | ATGTTTTACGTGCAC GGTACGCCC CATG GGGTGTACC TTAGATCCTAAGTCA PAE2137 1261851 - 1261471 - | hypothetical protein TERM 1150 1261840 - 1261860 + g 72 -4.6 -4.62872 | overlap 1261844 1261851 GCCCCGTAATTCCAC GCATGTGC GCATG GCGCAAGC TTTTTGCCAATTAAT PAE2138 1261955 - 1262848 + | hypothetical protein TERM 1151 1262859 - 1262875 + T 83 -4.4 -5.28831 | gap 1, overlap 1262849 1262848 1262846 ACTAGGCGCAAATTT GCGCGTC TTGT GAC-CGC TTTTGTTTTCTTAGT PAE2138a 1263324 - 1263016 - | hypothetical protein PAE2140 1263958 - 1264134 + | hypothetical protein PAE2142 1264390 - 1264566 + | hypothetical protein PAE2144 1265122 - 1264883 - | hypothetical protein TERM 1152 1265149 - 1265126 - R 87 -11 -4.00066 | gap 1, opp_overlap 1265128 GTCATAATCCACAAA CTC-GGGCGCG CCC CACGCCCAGAG CGAGAGATGCGTTCC PAE2146 1265593 - 1265393 - | hypothetical protein PAE2147 1266339 - 1265617 - | hypothetical protein PAE2148 1266539 - 1266345 - | hypothetical protein TERM 1153 1266928 - 1266943 + G 77 -6.2 -4.72272 | CGTGTTTACGCCGCC CGTTAT AATT ATAACG TTTTTCATGCCGAAA PAE2149 1266794 - 1267222 + | hypothetical protein PAE2151 1267267 - 1268229 + | hypothetical protein PAE2152 1268260 - 1268823 + | hypothetical protein PAE2153 1268789 - 1269859 + | hypothetical protein PAE2154 1271022 - 1269856 - | hypothetical protein TERM 1154 1269952 - 1269936 - G 70 -4.4 -4.52589 | gap 1, overlap 1269937 1269938 GCGTTTTAGATAAAA GCGCGGT CAAA ACCGC-C TCAACGAGATCAGGA TERM 1155 1270823 - 1270800 - G 70 -3.7 -4.70626 | overlap 1270802 1270813 CAACAACTGTAAAAA CGCCGCCGA TAAGCT CCAGCGGGG GAGAGCCGTAGGAGG PAE2155 1272380 - 1271022 - | hypothetical protein PAE2157 1273031 - 1272399 - | hypothetical protein PAE2158 1273594 - 1273007 - | fuculose-1-phosphate aldolase (fucA) TERM 1156 1273125 - 1273147 + g 70 -7 -4.13767 | gap 1, opp_overlap 1273138, overlap 1273125 TCTGCCAAGTCTCTG C-CCACGGC AACCAC GCCGTGGCG TTTTAAAATAGCCAC TERM 1157 1273187 - 1273138 - G 73 -11.5 -2.73364 | gap 1, opp_overlap 1273125 1273125 1273158, overlap 1273156 1273158 TGCCCACGGCAACCA CGCCGTGGCGTTTTAAAATAGCCA CAT TGGCT-TTTTCAAGCGCCGCCGCG ACTGCCTCTGCAAGC TERM 1158 1273158 - 1273168 + g 77 -6.8 -4.56597 | opp_overlap 1273158 1273156 1273138 TGGCGTTTTAAAATA GCCA CAT TGGC TTTTTCAAGCGCCGC PAE2159 1274991 - 1273630 - | hypothetical protein TERM 1159 1274973 - 1274929 - G 81 -12.7 -3.14132 | opp_overlap 1274928 1274926, overlap 1274932 GGCCTTGGCGAGCAA GTAGGAGGCGTAGGCGCCAGC AGT GCCGGCGCCTGCCACCACTAC ATCGTATTGCTCTGT TERM 1160 1274968 - 1274932 - G 81 -13 -2.77899 | gap 2, opp_overlap 1274928 1274926, overlap 1274929 CTTGGCGAGCAAGTA GGAGGCGTAGGCGCCAGC AGT GCCGGCGCCT--GCCACC ACTACATCGTATTGC PAE2160 1275701 - 1275024 - | hypothetical protein PAE2161 1275966 - 1275730 - | hypothetical protein PAE2162 1276388 - 1275987 - | Holliday junction resolvase PAE2163 1276873 - 1276385 - | hypothetical protein PAE2164 1277469 - 1276870 - | transcription factor TERM 1161 1277202 - 1277189 - G 70 -5.9 -4.25283 | ACCTCGGGATCAAAA GGCAC ATCA GCGCC GTGATCCTTTAGTAG PAE2165 1279030 - 1277564 - | prolyl-tRNA synthetase TERM 1162 1279138 - 1279162 + r 74 -5.5 -4.59773 | opp_overlap 1279145 TAAGACATGCCGGAT GCGCAAATGCC TCT GGCAACGGCGC TTTTTACACGTCGCC PAE2166 1280277 - 1279513 - | beta-aspartate methyltransferase (pimT), conjectural PAE2167 1280785 - 1280300 - | hypothetical protein PAE2169 1281175 - 1281471 + | 30S ribosomal protein S26e PAE2171 1282069 - 1282431 + | paREP2b, degenerate TERM 1163 1282447 - 1282423 - gf 100 -10.7 -5.19879 | overlap 1282424 CGCCAAATACAAAAA GGCCCTTGAGG AGG CCTCAAAGGCG TGGTACGAGCAAAGA TERM 1164 1282446 - 1282424 - gf 100 -14.2 -3.70843 | overlap 1282423 GCCAAATACAAAAAG GCCCTTGAGG AGG CCTCAAAGGC GTGGTACGAGCAAAG TERM 1165 1282495 - 1282461 - gf 79 -9.9 -3.78775 | opp_overlap 1282483, overlap 1282492 CGTGGTACGAGCAAA GAGACCCCACAGCGC TTTGG GCGCTGAGAGAGCTC GGCTTTAAACCAAGC PAE2173 1282361 - 1282807 + | paREP2b, degenerate TERM 1166 1283473 - 1283500 + G 77 -12 -3.25823 | gap 1, opp_overlap 1283477, overlap 1283474 1283477 TACTTCACTGCCCTC ACAACGGGCC-CG CGC CGTGGCCCGTTGG TTGCTCTCAAGACAG TERM 1167 1283474 - 1283499 + G 95 -15.5 -2.55351 | gap 1, opp_overlap 1283477, overlap 1283473 1283477 ACTTCACTGCCCTCA CAACGGGCC-CG CGC CGTGGCCCGTTG GTTGCTCTCAAGACA TERM 1168 1283496 - 1283477 - g 80 -11.4 -3.29144 | gap 1, opp_overlap 1283477 1283474 1283473 TCACTGCCCTCACAA CGGGCC-CG CGC CGTGGCCCG TTGGTTGCTCTCAAG TERM 1169 1283477 - 1283496 + G 82 -11.4 -3.43071 | gap 1, opp_overlap 1283477, overlap 1283474 1283473 TCACTGCCCTCACAA CGGGCC-CG CGC CGTGGCCCG TTGGTTGCTCTCAAG PAE2175 1283354 - 1283770 + | hypothetical protein TERM 1170 1284003 - 1284021 + G 77 -5.9 -4.69656 | overlap 1284004 CCCGCGGCAGGGGGC TCGCCTC GAGGG GAGGCGC TTTTATTGACTCCTT PAE2176 1283807 - 1284349 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) PAE2177 1284398 - 1284811 + | hypothetical protein PAE2179 1285314 - 1286585 + | hypothetical protein PAE2180 1289527 - 1286960 - | DNA polymerase I TERM 1171 1287038 - 1287056 + g 74 -6 -4.46493 | overlap 1287041 CTCAAGAGAGGTGCT GATGTACT CTA AGTACTTC TTTTCGTCTATTTCG TERM 1172 1287041 - 1287053 + g 72 -6.3 -4.31813 | overlap 1287038 AAGAGAGGTGCTGAT GTACT CTA AGTAC TTCTTTTCGTCTATT TERM 1173 1288568 - 1288583 + g 74 -10.4 -3.51924 | opp_overlap 1288564 CTCTTTAGACATCCC CAGGGC CAGC GCCCTG TTGTATAAATAGGGC TERM 1174 1289858 - 1289841 - g 84 -7.7 -4.63479 | TATCATAAAGCAAAA CCAAGAC GAGA GTCTCGG AGAGTTTAACTACGT PAE2181 1289617 - 1290027 + | hypothetical protein PAE2182 1291216 - 1290020 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase) TERM 1175 1290750 - 1290766 + g 77 -2.9 -5.09173 | overlap 1290753 AGCTTTCCAAAACGC GTTGTAG ATT CTGCTAC TTTTTTCAACTCTTC TERM 1176 1291506 - 1291484 - g 70 -6.2 -4.16943 | TTTCAGAGTGGAAAA CGGCGATG GTTCTGG CAGCGCCG CCATAGCCCTGGCTT PAE2183 1291245 - 1292351 + | acetyl-CoA C-acyltransferase PAE2184 1292385 - 1292786 + | protein associated with acetyl-CoA C-acyltransferase PAE2185 1292783 - 1293835 + | hypothetical protein PAE2186 1293920 - 1294144 + | hypothetical protein PAE2187 1294172 - 1294780 + | hypothetical protein TERM 1177 1294987 - 1294967 - g 87 -4.7 -5.27335 | GGGCGGAAAGAAAAA GCCAACT CTAAGCC AGCTGGC AAAAAAGGCTGAGAA PAE2188 1294950 - 1295282 + | 30S ribosomal protein S25e PAE2190 1295438 - 1296328 + | hypothetical protein PAE2191 1297442 - 1296321 - | pyruvate formate-lyase activating enzyme-like protein PAE2192 1297511 - 1298146 + | hypothetical protein TERM 1178 1298521 - 1298540 + F 83 -4.2 -5.31456 | overlap 1298512 GCAGAACGTCCCTCC GGCGTGTT TAAC AACGGGCC TTTTTTGTAAGTTCA PAE2196 1299052 - 1299594 + | hypothetical protein PAE2197 1300476 - 1299586 - | phosphoesterase PAE2198 1300736 - 1300461 - | hypothetical protein PAE2199 1301121 - 1300741 - | hypothetical protein TERM 1179 1300780 - 1300794 + g 78 -5.7 -4.80736 | GGTAGCCCCGCCCTT GAGCT TAGCC AGCTC TTTGTTTATTTCCTC TERM 1180 1301138 - 1301150 + r 70 -4.9 -4.45485 | GGCAACCCGTACCTC CTATT TTA AATAG TTTTCTACATCTCCT PAE2200 1301364 - 1301155 - | hypothetical protein PAE2201 1301902 - 1301357 - | hypothetical protein rpl37ae 1302198 - 1301881 - | 50S ribosomal protein L37Ae PAE2206 1303624 - 1302800 - | exosome complex RNA-binding protein Rrp42 TERM 1181 1303459 - 1303476 + g 70 -6.9 -4.07568 | TGCCCAGCTTCACCT CGGCTGA GCCG TCCGCCG TTTTGACAACGCCCA PAE2207 1304366 - 1303626 - | exosome complex exonuclease Rrp41 TERM 1182 1304247 - 1304262 + g 70 -10.4 -3.14211 | opp_overlap 1304246 1304243, overlap 1304251 GCCGTAGGACACCAT CGCCGA GCCG TCGGCG TTGCTCACAACGCCT PAE2208 1305070 - 1304363 - | exosome complex RNA-binding protein Rrp4 TERM 1183 1304436 - 1304454 + g 70 -4.4 -4.56133 | overlap 1304431 1304437 TCAGTCAACCCCATC ACGTGGCT TTC AGCCTCGA TTTTCCTTATTAAGC PAE2209 1305768 - 1305070 - | putative RNA-associated protein TERM 1184 1305273 - 1305294 + g 70 -3.7 -4.68705 | gap 1, opp_overlap 1305267, overlap 1305273 1305274 TGGAGGAGACCGCCA G-GGCCAC CCGCGCT GTGGCCAC TTTTATTGGAATTAT TERM 1185 1305601 - 1305613 + g 72 -4.7 -4.6856 | CAACGCCTGTTCTGA GGCGC GGA GCCCC TTTTTGGCATCTTTA PAE2210 1306743 - 1305871 - | hypothetical protein PAE2211 1306782 - 1307705 + | hypothetical protein TERM 1186 1307727 - 1307698 - T 73 -9.5 -3.36289 | gap 1, opp_overlap 1307697 1307694, overlap 1307707 CAGTAGTTGAATTAA TGCTGTAAACGTAT AGT ACACGTTTAC-GCA ATTAAATTCCTAAGC PAE2212 1307945 - 1307721 - | hypothetical protein PAE2213 1308376 - 1307960 - | hypothetical protein PAE2214 1308425 - 1308688 + | hypothetical protein TERM 1187 1308678 - 1308691 + T 78 -6.7 -4.66163 | TGTTTATACTCTTAA GAGCT TGTT AGCTC TTTTTAAGTAGCCCT PAE2215 1309416 - 1308685 - | proteasome subunit alpha TERM 1188 1310861 - 1310873 + G 70 -6.2 -4.26903 | GGCCAAATACCGCCG GCGG ATAAA CCGC TTTTACTCCGCTACG PAE2217 1309784 - 1311367 + | DNA topoisomerase VI subunit B PAE2219 1311403 - 1312506 + | DNA topoisomerase VI subunit A PAE2220 1312578 - 1313591 + | hypothetical protein PAE2222a 1313938 - 1313819 - | hypothetical protein PAE2222b 1314128 - 1314042 - | hypothetical protein PAE2224 1314854 - 1314369 - | hypothetical protein TERM 1189 1314569 - 1314540 - G 75 -5.7 -4.63184 | opp_overlap 1314544 1314546 1314562 AATCCATCTTAAAAA TCTAGACACGACG CCTG CATCGTGTATTGA TACATCTATCGGCTC PAE2225 1315683 - 1314844 - | hypothetical protein PAE2226 1315733 - 1316011 + | chromatin protein TERM 1190 1316202 - 1316172 - T 74 -6 -4.59853 | opp_overlap 1316192, overlap 1316190 TCAACGCCGTAAAAA GCGCCTTGCGAGAA ACA CCCCCGCGAAACGC CGAATTTTCTGGGCA PAE2229 1316435 - 1316157 - | paREP2a TERM 1191 1316459 - 1316446 - H 74 -8.1 -3.86897 | opp_overlap 1316446 1316445 1316443 TCCATCCCCCAGAAA GCCCT CCTC AGGGC GTATTTGCTGATTAG TERM 1192 1317428 - 1317416 - g 71 -9.1 -3.53563 | overlap 1317405 AGACGCCGTTGTAAA CGCCT TGA AGGCG GCAGGGCTGGGGGAG TERM 1193 1317532 - 1317514 - g 71 -9.6 -3.53091 | ATGGCCTTCGCGAAA TTCAGCGC ATG GCGCTAAA AGGCGATGTGGAGGC TERM 1194 1317597 - 1317585 - g 78 -10.5 -3.54919 | overlap 1317575 AAGGACGTTTTGAAA CGCCG ATA CGGCG ACGATGCAGTGAAGA TERM 1195 1317869 - 1317902 + G 70 -11.1 -2.78679 | opp_overlap 1317860 1317874, overlap 1317868 1317871 GGAAAAGAGGGGTGG GACAACGATTACGTA TTAC TACGAAATCGCTGTC ATTTACCTCAAAGAC PAE2230 1316508 - 1317998 + | paREP2b PAE2231 1317974 - 1318066 + | paREP2b TERM 1196 1318674 - 1318685 + G 81 -7.2 -4.62069 | CCGCAGCTTCCTCCC CGCC CTAT GGCG TTTTTGAGCTAACAG TERM 1197 1318748 - 1318761 + G 86 -3.7 -5.31877 | opp_overlap 1318748 GTCGAGCTAGACAAT GGAGC TCTG GCGCC TTTTTTGTCGTCGGT TERM 1198 1319163 - 1319142 - g 88 -8.7 -4.62336 | ATCCCAGTTTAAAAA TCGCAATCG CCGT CGATAGCGA TATAGACCCCGACGA PAE2232 1318103 - 1319377 + | hypothetical protein PAE2233 1319406 - 1320527 + | hypothetical protein TERM 1199 1320776 - 1320791 + G 70 -10.4 -3.17553 | TAATGCTAATTTCCG CCTGCG TCCT CGCAGG TATTCCGCTTTTTCA PAE2234 1320520 - 1320870 + | hypothetical protein PAE2237 1321871 - 1321101 - | N-glycosylase/DNA lyase PAE2238 1322874 - 1321837 - | DNA primase large subunit TERM 1200 1322379 - 1322344 - GR 100 -16.2 -3.54919 | opp_overlap 1322341 AAGTATTCTCTCAAA GTCGTCAAGAGGGAGG ATTA CCCACCCCTTGACGAC GACTCGATTAATCAT TERM 1201 1322668 - 1322680 + gr 77 -10.5 -3.38812 | overlap 1322666 ATATAACGCAAGTCT GGCCG CTA CGGCC TCTTCTTCAGGCGAG PAE2239 1323997 - 1322918 - | hypothetical protein TERM 1202 1323620 - 1323636 + g 74 -2.2 -5.13741 | gap 1, overlap 1323617 CTCCTCAATGGCCTC GGC-GGG CAGG CCTAGCC TTTTTATTACGTTGA PAE2240 1324904 - 1323990 - | hypothetical protein TERM 1203 1324773 - 1324763 - G 70 -6.8 -4.08692 | TAATGCCGCTCAAAA CGTC TAA GACG ACGTCATCAAGCCCT PAE2242 1324990 - 1326267 + | hypothetical protein PAE2243 1327122 - 1326358 - | hypothetical protein PAE2244 1327646 - 1327074 - | hypothetical protein TERM 1204 1327881 - 1327869 - H 70 -9.1 -3.33162 | opp_overlap 1327865 1327869 TACGTGAGTGTAGAA CGCCA ATG TGGCG TTCATCTGTGCCCGA TERM 1205 1327869 - 1327881 + H 70 -9.1 -3.32022 | opp_overlap 1327869, overlap 1327865 TACGTGAGTGTAGAA CGCCA ATG TGGCG TTCATCTGTGCCCGA PAE2246 1327968 - 1328468 + | N-acetyltransferase PAE2247 1328554 - 1331412 + | hypothetical protein PAE2248 1331402 - 1331917 + | hypothetical protein PAE2249 1331917 - 1332663 + | hypothetical protein TERM 1206 1333837 - 1333858 + G 75 -5.1 -4.72007 | overlap 1333822 1333839 GCCCGAGGCGCGGTT TATAGTGCC GGCG GGCTCTATG TTTATTTTCGTCGAC PAE2251 1332872 - 1334065 + | aspartate aminotransferase (aspC), conjectural TERM 1207 1334399 - 1334389 - g 77 -6.8 -4.56597 | CTGTGGTTTGAAAAA GGGA ATA TCCC CTACGATAGAATGTG PAE2253 1334062 - 1334535 + | mutT/nudix family protein PAE2254 1335078 - 1334515 - | hypothetical protein TERM 1208 1335830 - 1335792 - g 72 -6.9 -4.25283 | overlap 1335794 1335822 AGGCGGCTAGGAAAA TAGCGCAGATGGTGT-CAG TGC CTGTACAC-ATCTGCACTG GCAAAACTAAAGACA TERM 1209 1335828 - 1335794 - g 76 -9.5 -3.73042 | overlap 1335792 1335822 GCGGCTAGGAAAATA GCGCAGATGGTGT-CAG TGC CTGTACAC-ATCTGCAC TGGCAAAACTAAAGA PAE2255 1335152 - 1336021 + | hypothetical protein PAE2256 1336047 - 1336352 + | hypothetical protein TERM 1210 1336677 - 1336663 - T 91 -8.6 -5.09204 | overlap 1336665 AGAGGTCAATAAAAA GGCTTT CGC AAAGCC AAAGGGCCTATACGT PAE2257 1336921 - 1336685 - | hypothetical protein rpoP 1337079 - 1336921 - | DNA-directed RNA polymerase subunit P PAE2259 1337608 - 1337102 - | hypothetical protein PAE2260 1338662 - 1337859 - | agmatinase (speB) PAE2261 1339545 - 1338655 - | cation efflux system protein, conjectural PAE2263 1341180 - 1339624 - | paREP2b TERM 1211 1340173 - 1340187 + g 80 -11.4 -3.40597 | overlap 1340171 CTCCACATCGCCATT CAGCGC CAT GCGCTG TATTTCCCTAAGGCC TERM 1212 1340237 - 1340253 + g 70 -10.9 -2.80796 | overlap 1340236 1340239 ATGTACTGTCCGTTC CACTTCG CCG CGAAGTG CTTTCCCTCCTCCAG TERM 1213 1340275 - 1340287 + g 73 -9.1 -3.60502 | CTCCTCCAGCCCTGC CGCCT TCA AGGCG TTTACAACTGTGTCT TERM 1214 1341240 - 1341253 + G 72 -8.1 -3.86897 | opp_overlap 1341240 1341239 1341237 TTAATCAGCAAATAC GCCCT GATG AGGGC TTTCTGGGGGATGGA PAE2265 1341212 - 1341589 + | paREP2a PAE2266 1341602 - 1343362 + | glycyl-tRNA synthetase PAE2268 1343419 - 1343769 + | hypothetical protein TERM 1215 1343910 - 1343896 - g 75 -7.2 -4.3898 | opp_overlap 1343896, overlap 1343900 ATGAGGTGGAGAAAA TTAACG CCC CGTTAA TACTTGGCCTCTACG TERM 1216 1343916 - 1343931 + G 70 -5.4 -4.41348 | gap 1, opp_overlap 1343900, overlap 1343916 1343917 GCCCCGTTAATACTT G-GCCTC TAC GAGGCGC TTTATTTAGCAGAGA PAE2269 1343766 - 1344317 + | tRNA-splicing endonuclease subunit alpha PAE2270 1344700 - 1344314 - | small heat shock protein, hsp20 homolog, conjectural PAE2272 1345021 - 1344800 - | hypothetical protein TERM 1217 1344829 - 1344839 + g 72 -8.2 -3.72576 | CTACGCCTATAATTT CGCC GTA GGCG TTTACTGGGAAAGAG PAE2273 1345066 - 1345782 + | reductase, putative PAE2275 1345813 - 1346154 + | hypothetical protein PAE2276 1346178 - 1347476 + | hypothetical protein PAE2278 1347490 - 1348080 + | actin-like protein TERM 1218 1348223 - 1348208 - f 76 -11.8 -2.69449 | overlap 1348204 1348207 TTGCATATAAGGAAG GCGGCG CCCG CGCCGC TAGGGCTGTAATTAG TERM 1219 1348547 - 1348533 - g 88 -12.8 -3.64703 | TTCTGCGCATTGAAA GGCGCC TTG GGCGCC GCAGTAGCGAAAAAG PAE2280 1348265 - 1350649 + | hypothetical protein PAE2282 1351439 - 1350720 - | hypothetical protein TERM 1220 1351647 - 1351636 - g 74 -5.8 -4.54727 | GTTGTTAAATGAAAA GTGG CAGT CCAC CCTTAAGAGGCAATT TERM 1221 1352755 - 1352767 + G 70 -4.7 -4.49556 | AATGAACCCCATGTG CGGCG CCG CGACG TTTATTTACTACGAC PAE2284 1351520 - 1353262 + | molybdenum cofactor biosynthesis protein (moaA) PAE2285 1355111 - 1353279 - | hypothetical protein TERM 1222 1353837 - 1353852 + g 72 -4.7 -4.61527 | GTTTAATAAAGGAGC CAGCT CGTCGA AGCTG TTTTTAAGAGATTTT TERM 1223 1354462 - 1354451 - G 75 -7.2 -4.41548 | opp_overlap 1354458, overlap 1354452 1354453 CCACATCTGAGAAAA CGGC GGCG GCCG TCGCGAGGCCTTTTA TERM 1224 1354458 - 1354472 + g 79 -4.2 -5.08483 | opp_overlap 1354451 1354452 1354453 TGAGAAAACGGCGGC GGCC GTCGCGA GGCC TTTTATTTGATTTTC PAE2286 1355872 - 1355108 - | ABC transporter ATP-binding protein, putative PAE2288 1357002 - 1355863 - | hypothetical protein TERM 1225 1357225 - 1357215 - g 72 -4.6 -4.59773 | TGCGATTCTCAAAAA CAGC ACG GCCG GCGAGAGCAAGGCGA TERM 1226 1357303 - 1357285 - g 71 -3 -4.84527 | overlap 1357278 CGTATAGAGGAAAAA GCCCGCAA CCT TTCCCGGC TGTACCCCAACACCA TERM 1227 1357436 - 1357411 - g 75 -6.9 -4.38712 | GCTAGGTTTAGAAAA GTAGCATTGGA AATC TCCAACTCTAC CAAGGAAGTGTGTAA TERM 1228 1358127 - 1358148 + G 83 -5.8 -4.93316 | opp_overlap 1358113 1358124 1358123 1358127, overlap 1358124 1358123 TGTGTCGAAAATCGA CAGGGCCA CCGCCT TGGCGCTG TTTTTAGTCTTGTTG TERM 1229 1359433 - 1359459 + G 83 -10.2 -4.10161 | gap 1, opp_overlap 1359432 1359431, overlap 1359433 GGGCCTGTGATAACT GG-GGCGGCTA TAATCC TAGCCGCCGCC TTTTCAACGCTACTG PAE2290 1357060 - 1359642 + | hypothetical protein PAE2291 1359659 - 1359841 + | hypothetical protein TERM 1230 1360098 - 1360078 - g 70 -5.3 -4.37658 | opp_overlap 1360078 1360080 AAGGCGCGGATAAAA CCCGCCCAA TGC CTCGGCGAG TTTTACTCATGGCTC PAE2293 1359868 - 1360443 + | hypothetical protein PAE2294 1360556 - 1360687 + | hypothetical protein PAE2295 1360689 - 1361663 + | hypothetical protein PAE2296 1362316 - 1361660 - | hypothetical protein TERM 1231 1362508 - 1362522 + G 74 -3.4 -4.98255 | opp_overlap 1362506 1362508 1362509, overlap 1362509 TTAAGACTAAAATCA GCGGCT CCC GGCCGG TTTTTGTCATTGACA TERM 1232 1363522 - 1363508 - g 74 -2.8 -4.88918 | TGAGTTTAAAGAAAA GCTTAT AGA ATTAGC CGGCAAGATGGAGTT valS 1362414 - 1364813 + | valyl-tRNA synthetase PAE2298 1367044 - 1364810 - | ATP-dependent helicase TERM 1233 1367082 - 1367072 - H 82 -6.8 -4.85599 | opp_overlap 1367071 TCTAGGTTATAAAAA TGGC GCC GCCA AGTTATATCGGCGAA PAE2299 1367128 - 1367853 + | hypothetical protein TERM 1234 1368037 - 1368047 + G 71 -2.6 -4.89838 | TACAGTTATTCTTTT TATA GTC TATA TTTTGTATTTGTTGG TERM 1235 1368372 - 1368390 + G 88 -5.3 -5.30616 | gap 1 GATTATATTCGTCAT CGTCCGCA TTGT TGCG-ACG TTTTTATTTGCGTCA PAE2301 1367941 - 1369026 + | ABC transporter ATP-binding component, degenerate PAE2306 1371138 - 1370056 - | resistance protein, conjectural TERM 1236 1370218 - 1370232 + g 77 -2.7 -5.14563 | CATTGTATATATGGC GCTGG AAATC CCCGC TTTTTTGCTGCCGGC TERM 1237 1370811 - 1370783 - G 72 -10.9 -3.01924 | opp_overlap 1370789, overlap 1370756 GAGCGGGCGGCAATA GCCCTCGCCCCCT CCG AGACGGAGAGGGC TATTGACATGGGCAG TERM 1238 1370789 - 1370811 + g 93 -14.8 -3.05844 | opp_overlap 1370756 1370783 GCGGCAATAGCCCTC GCCCCCTCCG AGA CGGAGAGGGC TATTGACATGGGCAG TERM 1239 1370941 - 1370954 + g 71 -2.3 -5.00616 | GCCCGCGCTCATCAT TGTGG AGTA CCCCA TTTTTTCGCCGAGAA PAE2307 1371629 - 1371135 - | hypothetical protein PAE2309 1371714 - 1372112 + | ferric uptake regulator, putative TERM 1240 1373041 - 1373053 + G 73 -9.1 -3.64703 | GGCCCCATGTTTATA CTCCC CAA GGGAG TTTACATGAGGCCGG PAE2310 1372219 - 1373469 + | proline dehydrogenase TERM 1241 1373596 - 1373580 - g 84 -7.9 -4.67943 | opp_overlap 1373594, overlap 1373582 TTTGAAGAGAGAAAA GACGCCA TAA TGGCGGC TAAAGAGCCTGGGTT TERM 1242 1373594 - 1373582 - g 78 -9.1 -3.94954 | overlap 1373580 TGAAGAGAGAAAAGA CGCCA TAA TGGCG GCTAAAGAGCCTGGG PAE2311 1373466 - 1373636 + | hypothetical protein PAE2312 1373689 - 1374837 + | succinyl-CoA synthetase beta subunit (sucC) TERM 1243 1375537 - 1375526 - g 83 -5.8 -4.90266 | opp_overlap 1375525 GGGAGTAATTAAAAA GCCA GTGG TGGC ATATGTGGCGGGGCG PAE2313 1374834 - 1375715 + | succinyl-CoA synthetase alpha subunit (sucD) TERM 1244 1376953 - 1376933 - g 72 -5.3 -4.46656 | opp_overlap 1376935, overlap 1376935 1376937 TGTACAAGAGGAAAA GAGACGCCA TGC TGGCGGCTT TAGAAACTTACATGC TERM 1245 1376949 - 1376937 - g 71 -9.1 -3.48465 | opp_overlap 1376935, overlap 1376935 1376933 CAAGAGGAAAAGAGA CGCCA TGC TGGCG GCTTTAGAAACTTAC PAE2315 1376017 - 1377216 + | aminotransferase, class I PAE2316 1377213 - 1378424 + | threonine dehydratase PAE2317 1378453 - 1379169 + | alanyl-tRNA synthetase related protein TERM 1246 1379595 - 1379609 + G 79 -10 -3.82378 | TCATTAACTACTTTA GAGGAC ACA GTCCTC TTCTTGTCCCTAAGT PAE2319 1379169 - 1380695 + | hypothetical protein TERM 1247 1381491 - 1381475 - g 74 -3 -5.00616 | overlap 1381487 1381489 GCGTTGTTGAAAAAA GCATAT ATGAA ATACGC CCAGGGCGTGCTAAA PAE2322 1381310 - 1382278 + | hypothetical protein PAE2323 1383086 - 1382268 - | hypothetical protein PAE2325 1383206 - 1383517 + | divalent cation tolerance protein, conjectural TERM 1248 1384026 - 1384010 - g 87 -13.7 -3.0094 | CGTTAGCGACACAGA CCCCCAC AGA GTGGGGG CTAAAATTCTGCGGT TERM 1249 1384589 - 1384574 - g 72 -10.4 -3.33865 | opp_overlap 1384572, overlap 1384572 GAGCGTAAAGGAACA CACGGG CGAG CCCGTG CCGATATTGCTATAC PAE2326 1383510 - 1384745 + | cofactor-independent phosphoglycerate mutase PAE2326a 1384745 - 1385032 + | hypothetical protein PAE2328 1385608 - 1384988 - | hypothetical protein PAE2330 1386752 - 1385598 - | sugar transporter, conjectural TERM 1250 1386367 - 1386390 + g 82 -7.4 -4.4767 | gap 1, overlap 1386370 AATAATACCACGTTT CTCCCCCTCCT CTC AGGCGGG-GAG TTTTCTGATACGTAA PAE2331 1387761 - 1387006 - | hypothetical protein PAE2332 1388742 - 1387774 - | alcohol dehydrogenase (Zinc) PAE2333 1390379 - 1388739 - | medium-chain acyl-CoA ligase TERM 1251 1388835 - 1388846 + g 70 -4.4 -4.55826 | AAATATTATTTTATC TGGT AGCC ACCA TTTTGGTATTTTCCC TERM 1252 1389645 - 1389624 - G 72 -8.6 -3.72695 | ATGGTTGGGATCAAA GCGGCCGG GGTAAA CCTGCCGC CAGCCTAATAACGCA PAE2335 1390466 - 1391659 + | succinyl-diaminopimelate desuccinylase PAE2336 1392473 - 1391649 - | hypothetical protein PAE2337 1392479 - 1392805 + | hypothetical protein TERM 1253 1393371 - 1393351 - g 71 -2 -4.94902 | gap 1, opp_overlap 1393341, overlap 1393342 TAATGAGTATAAAAA GATTTATAC GATT GTA-AAATC TATACCCACAAACGC PAE2338 1392809 - 1393492 + | hypothetical protein PAE2340 1394444 - 1393479 - | hypothetical protein PAE2341 1394749 - 1394441 - | hypothetical protein TERM 1254 1394574 - 1394560 - G 72 -10 -3.29511 | opp_overlap 1394549 1394547 1394555 TCGACTGGGGGAGAA GGGAGA ACC TCTCCC AGTCTCTAATTTCGC PAE2343 1395426 - 1394791 - | hypothetical protein PAE2344 1395788 - 1395426 - | hypothetical protein TERM 1255 1395789 - 1395778 - G 73 -3.6 -4.73432 | GGAAATACAAAGAAA CGCG GAGC CACG AAAAAGCGTTACGTT PAE2346 1395988 - 1396620 + | hypothetical protein PAE2348 1397226 - 1396591 - | hypothetical protein PAE2349 1397630 - 1397211 - | hypothetical protein PAE2350 1398069 - 1397662 - | hypothetical protein PAE2352 1399903 - 1398131 - | putative ATPase RIL PAE2354 1400260 - 1400027 - | hypothetical protein PAE2355 1401315 - 1400251 - | glycosyl transferase PAE2357 1401447 - 1401950 + | hypothetical protein TERM 1256 1401988 - 1401973 - f 78 -4.7 -5.01732 | AACTCCTTTAAAAAA GTAGC GCCATG GCTAC ATGCAACAAGTGGGA PAE2358 1401981 - 1402265 + | hypothetical protein PAE2359 1402981 - 1402253 - | hypothetical protein TERM 1257 1403052 - 1403074 + G 78 -10.5 -3.48024 | opp_overlap 1403050 1403051, overlap 1403050 CAGGGAGTATAAAGC CGCCGCTGG CAACC CCAGCGCCG TATTTAATAATAGGC TERM 1258 1403618 - 1403605 - g 72 -4.5 -4.63928 | AGACGAGGCTAAAAA CGCCT TATT AGACG CATATACCCGTAAGC TERM 1259 1403651 - 1403670 + G 70 -3.5 -4.72029 | CACGGCGGCTATCTC GGCGATA CATACA TAGCGCC TTTTGTTAACTTCGG TERM 1260 1403726 - 1403716 - g 79 -2.4 -5.22039 | opp_overlap 1403722 GTCAAACTTAAAAAA CACC TTG GGGG CTATAAGGCCCTCTT PAE2361 1403021 - 1404025 + | sugar phospate transferase PAE2362 1406788 - 1404002 - | ATP-dependent helicase TERM 1261 1404738 - 1404757 + g 91 -7.8 -5.02606 | AGCTCAGCTATTTCT CTTGCGTC CATA GACGCCAG TTTTCTTATTTGCTC TERM 1262 1404922 - 1404938 + g 70 -4.3 -4.54047 | GAGTTCCAAACGCCG CGTGGAC AAC GACTACG TTTTCTCTGAACTGC TERM 1263 1406046 - 1406086 + g 74 -8.9 -3.99324 | opp_overlap 1406044 1406046, overlap 1406049 TTTATTAATTTAAGA CGGGCTATGACGTCGGG AAATAGG CCCGACGTCTCAGCTAG TTTGTAGTCCTCCGC TERM 1264 1406049 - 1406083 + g 75 -11.4 -3.04836 | opp_overlap 1406046 1406044, overlap 1406046 ATTAATTTAAGACGG GCTATGACGTCGGG AAATAGG CCCGACGTCTCAGC TAGTTTGTAGTCCTC TERM 1265 1407246 - 1407268 + G 93 -11.3 -4.26344 | gap 1 CGAATCGGGTTACTC CGCCGTGGCG TCAG CGCCA-GGCG TTTTACTGGGCGTAT PAE2363 1406848 - 1407363 + | hypothetical protein PAE2364 1408185 - 1407337 - | hypothetical protein PAE2365 1408765 - 1408202 - | nucleoside-triphosphatase (NTPase) PAE2366 1409496 - 1408765 - | glutaredoxin-like protein PAE2367 1409913 - 1409521 - | hypothetical protein PAE2370 1410870 - 1409941 - | malate dehydrogenase PAE2371 1412284 - 1410938 - | NADH oxidase (nox) PAE2374 1412735 - 1412613 - | hypothetical protein PAE2376 1414773 - 1413622 - | drug resistance protein, conjectural PAE2375 1412808 - 1413683 + | 4-hydroxybenzoate octaprenyltransferase (ubiA) TERM 1266 1413773 - 1413755 - GT 79 -4.4 -4.88067 | ACGTAGCCAGAAAAA GCCGCGCC AAT GGCATAGC CCAAGTTATTCACAG PAE2377 1415323 - 1414733 - | ribosomal protein L6 PAE2378 1415965 - 1415390 - | hypothetical protein TERM 1267 1415729 - 1415712 - G 84 -4.1 -5.18726 | overlap 1415715 TTGTTATAATAAAAA TCATTCC CTGT GGAAAGA TAGAGGCCTAGATAG PAE2380 1416199 - 1415981 - | hypothetical protein TERM 1268 1416252 - 1416227 - H 79 -9.1 -4.05747 | opp_overlap 1416226 1416227, overlap 1416228 GAGAGTGCATATAAA TTTTTCTCCAC CCCA GTGGAGAAAAC CTTTTAAAACAGTGA TERM 1269 1416251 - 1416228 - H 80 -12.6 -3.02966 | opp_overlap 1416227 1416226, overlap 1416227 AGAGTGCATATAAAT TTTTCTCCAC CCCA GTGGAGAAAA CCTTTTAAAACAGTG PAE2382 1416466 - 1416894 + | hypothetical protein TERM 1270 1416991 - 1416970 - g 88 -11.6 -3.73068 | TCCGCAAGCGAAGAA GGCCTTGG AGAGAG CCAAGGCC ATAGCCGAGAAGTTC TERM 1271 1417150 - 1417127 - g 70 -5.2 -4.32067 | overlap 1417124 1417128 CAGCTCATAAAAGAA GCCTTGGCGT TCTT AGGACAAGGC GCCGAGGGGAAAATC PAE2384 1416923 - 1417336 + | universal stress protein PAE2385 1418064 - 1417333 - | transport protein part 2, authentic frameshift TERM 1272 1417681 - 1417668 - GT 79 -3.7 -5.03145 | opp_overlap 1417676, overlap 1417669 TAAGCCCTGAAAAAA GCGCG GTGA CGCGA GGCGCTTTGTCAATA PAE2385a 1418528 - 1417995 - | transport protein part 1, authentic frameshift TERM 1273 1418343 - 1418333 - GH 77 -8.2 -4.08692 | TAACGTCTGTTAAAA CCCC GCC GGGG AGAATAGTTAATAAC PAE2387 1418606 - 1419256 + | hypothetical protein PAE2388 1419955 - 1419224 - | hypothetical protein TERM 1274 1419944 - 1419930 - G 70 -5.6 -4.37658 | overlap 1419932 AAGCCGCCTATAAAA CCCGCT AAC AGCGCG AGCCAAAACATAAAA TERM 1275 1420163 - 1420153 - g 74 -2.4 -5.04249 | opp_overlap 1420155 1420156 1420160, overlap 1420154 1420155 GCTGGAAAAAATAAA GCTG ACG CCGC GAGCCGCCGTCGTTA PAE2389 1420061 - 1420237 + | preprotein translocase subunit SecG PAE2391 1420414 - 1422006 + | dipeptide binding protein PAE2392 1422791 - 1422003 - | dipeptide transport permease TERM 1276 1422155 - 1422124 - G 76 -9.4 -3.7511 | CCGTTTATAATATAA GACCTGGCGCTTGA GAGG TCAAGCCCCCAGTC GGGGGTGGGGGGCGT PAE2393 1423804 - 1422791 - | dipeptide transport permease TERM 1277 1422880 - 1422900 + g 71 -11.1 -2.87294 | opp_overlap 1422880 TTACGACGAAGATAA CCACCGTGC CCT GGACGGTGG TGTAGTCTAGATATT TERM 1278 1422900 - 1422880 - G 84 -11.1 -3.72742 | opp_overlap 1422880 TTACGACGAAGATAA CCACCGTGC CCT GGACGGTGG TGTAGTCTAGATATT TERM 1279 1423488 - 1423465 - G 78 -8.8 -4.25104 | CGTGGCCGAGGAAAA CGCTCACAAC AAAA GCTGAGAGCG CCAGTTCTACCGTGG TERM 1280 1423935 - 1423922 - H 71 -9.5 -3.28712 | GCGCCCGGCTGATAA CCGGG AGGT CCCGG GTTCAAATCCCGGCG TERM 1281 1424768 - 1424793 + G 71 -9 -3.5594 | CAGTTCCGAGGAGGA GGCCTCTCGA CGTGTT TAGAGAGGCC TTTCCCGCATGGATT PAE2394 1424332 - 1425018 + | hypothetical protein PAE2396 1425023 - 1425619 + | hypothetical protein PAE2397 1425612 - 1425911 + | hypothetical protein PAE2398 1425908 - 1426612 + | hypothetical protein PAE2399 1426609 - 1428141 + | type II secretion system protein, conjectural PAE2400 1428177 - 1428503 + | hypothetical protein TERM 1282 1428643 - 1428619 - g 82 -9.3 -4.27192 | opp_overlap 1428621 AAAGCCGTATTAAAA CTCGCCAAACA CGG CGTTTGGCTAG AGGCTGAGGACTGGC PAE2402 1428496 - 1428834 + | hypothetical protein TERM 1283 1429320 - 1429365 + G 90 -14.8 -2.93382 | gap 2 CGTTAATTTTCGGCG TCACCGCGGCAGTGGGGGCCGT GGCC GTGGCCTCTAC-GCCGCGG-GA TCTCTCCCTCTGGAG TERM 1284 1429588 - 1429574 - g 73 -9.2 -3.57144 | opp_overlap 1429574 1429575, overlap 1429576 GCGGCCATGCTGAAA GAGGGG GCT CCCCCC GATATTATAATCGCG TERM 1285 1429588 - 1429576 - g 76 -10.5 -3.36515 | opp_overlap 1429575 1429574, overlap 1429574 GGCCATGCTGAAAGA GGGGG CTC CCCCC GATATTATAATCGCG PAE2403 1428881 - 1430077 + | hypothetical protein PAE2405 1430131 - 1430604 + | hypothetical protein PAE2406 1430663 - 1431643 + | hypothetical protein PAE2407 1431693 - 1431860 + | hypothetical protein PAE2408 1431845 - 1432288 + | hypothetical protein PAE2409 1432293 - 1433390 + | hypothetical protein TERM 1286 1433658 - 1433629 - g 70 -4.3 -4.55295 | gap 1, overlap 1433631 1433632 CCGGCTACAAAGAAA TACGTGGAATTCCC ATT GGGAATGCCA-GTG GCCTATAGGCTACAG PAE2410 1433392 - 1434150 + | hypothetical protein TERM 1287 1435581 - 1435594 + G 72 -5.2 -4.55798 | AGCCGGGGTATAACG CCCC TATCGC GGGG TTTTCCTTTGGCATA TERM 1288 1435623 - 1435639 + G 83 -12.3 -3.40403 | TAGACGCGGGCTTTG GGCGGTT AAC AACCGCC TTCTACTCCCCGCCG PAE2412 1434182 - 1437280 + | hypothetical protein TERM 1289 1437461 - 1437507 + G 76 -9.2 -3.85698 | opp_overlap 1437449 ATACGGAGTGTACTA CGTCTACGAGGGCGGCGGATGG GCT TTGTCCGCCGCTCCCTCAGCCG TTTCTACGCCGCAGC PAE2414 1437273 - 1437785 + | hypothetical protein PAE2416 1437982 - 1438248 + | hypothetical protein PAE2417 1438245 - 1438538 + | hypothetical protein PAE2419 1439729 - 1438593 - | hypothetical protein PAE2420 1440908 - 1439757 - | cystathionine gamma-synthase TERM 1290 1440670 - 1440682 + g 72 -10.5 -3.01712 | opp_overlap 1440670 AACACCGTGGAGAGA GCGGC CAT GCCGC TATTAAAAGCAAGAG TERM 1291 1440682 - 1440670 - G 71 -10.5 -2.88427 | opp_overlap 1440670 AACACCGTGGAGAGA GCGGC CAT GCCGC TATTAAAAGCAAGAG TERM 1292 1441283 - 1441269 - g 82 -2.9 -5.25656 | opp_overlap 1441259 1441269, overlap 1441261 1441258 AAAACTATGAAAAAA CTATT AAAGA AATAG ATTTTTCACATGTTG PAE2421 1441097 - 1441726 + | potassium transport peripheral protein, conjectural PAE2422 1442435 - 1441716 - | potassium transport membrane protein, conjectural TERM 1293 1442463 - 1442447 - R 100 -8.1 -5.39721 | opp_overlap 1442447 CCATGACATAAAAAA GGTATTA TAT TAATACC TCACTTGTCCAAATA PAE2423 1444891 - 1442456 - | phosphoenolpyruvate synthase TERM 1294 1443244 - 1443276 + g 72 -4.8 -4.64334 | opp_overlap 1443231 1443244, overlap 1443244 1443243 CAGGCCTGGGATAGA TGGCCGAGGCCA CTTTGGCTA TGCCCTCAGCCA TTTTATTCACGAATT TERM 1295 1443736 - 1443767 + g 74 -7.4 -4.02051 | gap 1 AAGGCACCCAGTCGG GGTCGGTCATTTTAG TCA CTAAAATG-TCGCCC TTCTTTAACTTCCTC TERM 1296 1444328 - 1444306 - G 76 -7.7 -4.29325 | opp_overlap 1444309, overlap 1444309 GATCAAGAGTGAAAA TAACGCCAG CAGAT CTGGCGTTT ACTAACTTCTGCACA TERM 1297 1444325 - 1444309 - G 82 -9.4 -4.25606 | opp_overlap 1444309, overlap 1444306 CAAGAGTGAAAATAA CGCCAG CAGAT CTGGCG TTTACTAACTTCTGC TERM 1298 1444309 - 1444325 + g 76 -9.4 -3.80858 | opp_overlap 1444309 1444306 CAAGAGTGAAAATAA CGCCAG CAGAT CTGGCG TTTACTAACTTCTGC PAE2424 1445709 - 1445017 - | hypothetical protein TERM 1299 1445192 - 1445177 - G 79 -2.6 -5.24989 | gap 1, overlap 1445181 CCATACATTAAAAAA TCCA-TG CCG CAGTGGA CACACCTCCCGACCT TERM 1300 1445319 - 1445332 + g 71 -3.1 -4.84359 | gap 1 AACTCGTAGCCACCA GCACGT CAA ACG-GC TTTTTGTGGCGCTGG TERM 1301 1446486 - 1446464 - g 74 -6.2 -4.56597 | opp_overlap 1446466 1446477, overlap 1446466 TTTCCCTGTTAAAAA CAGTCCGC GAGGCGG GCGGCCTG CCCTTCCTCGGCACT TERM 1302 1446576 - 1446561 - g 76 -4 -5.00616 | overlap 1446562 1446563 GTCCGCGTTAAAAAA CTTGCT AGCC AACAAG AGGCTCTCCTTCGGC PAE2426 1445776 - 1447011 + | hypothetical protein PAE2427 1447133 - 1446972 - | hypothetical protein PAE2429 1447605 - 1447264 - | hypothetical protein PAE2430 1448633 - 1447602 - | o-syaloglycoprotein endopeptidase TERM 1303 1447982 - 1447993 + g 70 -7.2 -4.12942 | TACACACTACAGGTA GCGG CGTG CCGC TTTTCCACAGTTTCA PAE2432 1448831 - 1448634 - | 30S ribosomal protein S27ae PAE2434 1449199 - 1448834 - | ribosomal protein S24 PAE2435 1449679 - 1449245 - | hypothetical protein PAE2438 1449930 - 1451372 + | hypothetical protein PAE2439 1451696 - 1451349 - | hypothetical protein TERM 1304 1452011 - 1452033 + G 74 -7.7 -4.11484 | overlap 1452013 GTATTAAAAGGCCAG TTCGCCTCT GTACA AGAGGCGTA TTTTAAAGCGTTAGA TERM 1305 1452013 - 1452031 + G 77 -10.3 -3.6543 | overlap 1452011 ATTAAAAGGCCAGTT CGCCTCT GTACA AGAGGCG TATTTTAAAGCGTTA PAE2442 1451879 - 1452520 + | hypothetical protein PAE2445 1452543 - 1453412 + | ornithine cyclodeaminase (arcB) PAE2446 1453403 - 1454758 + | helicase, DNA repair TERM 1306 1455756 - 1455742 - g 90 -7 -5.12916 | overlap 1455744 GAGAAAATAACAAAA GTGGGG AAG CCCCTC CTAGTCCTCGTCTCC PAE2447 1454755 - 1455891 + | hypothetical protein PAE2449 1456524 - 1456027 - | hypothetical protein TERM 1307 1456057 - 1456071 + g 86 -7.2 -5.00884 | TCCGTACCGCCCCAA GTAGTA CTC TACTAC TTTTTTCAACGCCCT PAE2450 1456627 - 1456953 + | ferredoxin PAE2451 1456985 - 1458079 + | pyruvate formate-lyase activating enzyme-like protein PAE2452 1458445 - 1458059 - | paREP13 TERM 1308 1458192 - 1458224 + gT 79 -11.1 -3.30159 | overlap 1458192 CCCCCTGGGGCGGGC CGCGCCCGGGGCGTC GGC GACCCCCTCGGCGGG TTCTCCCCGCCTTCG PAE2453 1458972 - 1458415 - | thymidine kinase PAE2454 1460128 - 1458989 - | hypothetical protein TERM 1309 1459049 - 1459020 - G 81 -10.1 -3.99878 | gap 1 AGATAGAATAGGAAA GACAGC-GCTGTGA ATA TCACAGCCGCTCTC GCCAAAAGCCGGTAT TERM 1310 1459868 - 1459903 + g 77 -6.8 -4.44914 | overlap 1459870 GGCGGCCCTGGGACC TAGGGAGAGAAGGCCG CTTG CAACTTTCTCTCCCTC TTCTTTTATTAAATA TERM 1311 1459870 - 1459901 + g 76 -9.4 -3.8165 | overlap 1459868 CGGCCCTGGGACCTA GGGAGAGAAGGCCG CTTG CAACTTTCTCTCCC TCTTCTTTTATTAAA PAE2455 1460302 - 1460135 - | 30S ribosomal protein S30e PAE2456 1460750 - 1460334 - | hypothetical protein TERM 1312 1460565 - 1460585 + g 72 -7.5 -3.87815 | opp_overlap 1460567 1460570 GCGTTTTGGCCTAAC CACAAGGGG CCT CCCTCTGTG TTTGTGAAGGTGGGC TERM 1313 1461453 - 1461443 - g 71 -2.4 -4.88407 | GGAGTTAATTAAAAA CGGC AGA GACG CGGCGGTAGCGGCTG PAE2457 1460787 - 1462052 + | arsenite transport protein, conjectural trpA 1462746 - 1462045 - | tryptophan synthase subunit alpha PAE2459 1463326 - 1462748 - | anthranilate synthase component II PAE2460 1464585 - 1463317 - | anthranilate synthase component I TERM 1314 1464142 - 1464164 + g 100 -11.3 -4.56597 | gap 1 CACAGGCCCCCTCAC GCGGGGCGAG TCGA CTC-CCCCGC TTTTTAGGGCCGGGA TERM 1315 1464285 - 1464250 - G 70 -3.9 -4.72272 | gap 1, opp_overlap 1464251 TGGCTTTATGAAAAA CGCCGCGGGGAGCGTC TTGTC GAC-CTTCCCGTAACG TAACAGCAATGGCTC PAE2461 1465583 - 1464582 - | anthranilate phosphoribosyltransferase PAE2462 1466856 - 1465624 - | tryptophan synthase subunit beta PAE2464 1469160 - 1467115 - | ABC transporter ATP-binding component TERM 1316 1467302 - 1467320 + g 88 -11.8 -3.73008 | opp_overlap 1467300 1467298 1467302, overlap 1467297 AAAGACATATAGACA TTCTGCTC TGC GAGCAGAA TTGTGATTTTCTCGT TERM 1317 1467320 - 1467302 - G 75 -11.8 -3.11329 | opp_overlap 1467302 1467297, overlap 1467300 1467298 AAAGACATATAGACA TTCTGCTC TGC GAGCAGAA TTGTGATTTTCTCGT TERM 1318 1467543 - 1467561 + g 72 -4.4 -4.70169 | overlap 1467545 GAAAAACAATATCTA CATCGGGC TTT GCCCCAAG TTTTCTTGCCTGTCG TERM 1319 1467832 - 1467842 + g 85 -8.2 -4.46212 | CAATGCCTCTGCTGT GGCC TCA GGCC TTTTGTAATAACCGG PAE2465 1469936 - 1469157 - | branched-chain amino acid ABC transporter, ATP-binding protein, putative TERM 1320 1470061 - 1470086 + r 88 -7.9 -5.02357 | opp_overlap 1470060 TTAAATATTGAAAGT TAAAAAATATA TATA TATATTTTTTA TTTTGTTTAATTATA PAE2466 1471365 - 1470097 - | acyl-CoA synthase PAE2467 1472367 - 1471462 - | fatty acid co-A racemase, conjectural TERM 1321 1471883 - 1471899 + g 74 -10.8 -3.21276 | overlap 1471881 TATCCCCGGCGTCCA GCGGCG ACCGC CGCCGC TATTATAAACGCGGC PAE2469 1472744 - 1472349 - | hypothetical protein PAE2471 1472963 - 1474102 + | acetyl-CoA C-acyltransferase TERM 1322 1474177 - 1474162 - g 81 -4.6 -5.1287 | overlap 1474163 TCTATATGTAAAAAA TGTGGG TATG CCCACT TCCCGCCGTTAGAAA PAE2472 1474099 - 1474443 + | protein associated with acetyl-CoA C-acyltransferase PAE2474 1476277 - 1474430 - | acetyl-coenzyme A synthetase TERM 1323 1475555 - 1475522 - G 87 -4.5 -5.22039 | TTCAAACCCAAAAAA CCACTTAGTGTGCGC ATAA GCCCACACCATATAG CTCCCGTGCCCGTGA TERM 1324 1476167 - 1476179 + g 70 -5.5 -4.33739 | opp_overlap 1476158 1476156, overlap 1476158 AAAAGGCGGATTTGA GCCGT CTA ATGGC TTTTCCCATTTTTTC TERM 1325 1477246 - 1477226 - g 72 -11.2 -3.05463 | ATTGTGTGGAGGCAA CCCCCATT GAGGT AATGGGGG TGAGGGGCACTGGCA PAE2475 1476652 - 1477788 + | acyl-CoA dehydrogenase PAE2477 1479127 - 1477781 - | molybdopterin binding oxidoreductase small and medium subunit TERM 1326 1478345 - 1478332 - G 71 -2.3 -4.96848 | opp_overlap 1478315 CTTTTGACATAAAAA TAGGC AAAA GCCTT CTCTTCTCATCGTAT PAE2478 1481424 - 1479124 - | molybdopterin binding oxidoreductase large subunit TERM 1327 1479302 - 1479343 + g 72 -6 -4.37067 | opp_overlap 1479299, overlap 1479303 1479338 AACTGGGACAAATCC GGCGTT-CCGTAAGTCTCTA ACAA TAGGGACTT-CGGCGACGCG TTTTCGTCATATTTC TERM 1328 1479406 - 1479384 - G 70 -6.8 -4.04474 | ACAGCGCCATACAAA CCCCGTGGTG TAT CCCCCCGAGG AGCTGGCCCTCTAAC TERM 1329 1479406 - 1479426 + g 79 -4 -5.03715 | GTGTATCCCCCCGAG GAGCTG GCCCTCTAA CAGCTC TTTTTTCAAAATCCT PAE2479 1482269 - 1481421 - | enoyl-CoA hydratase TERM 1330 1481731 - 1481750 + gr 81 -9.2 -4.13282 | AGGATGTAGTACTTC GCCCTGAG AGGG CCCAGGGC TTTTACAAATCTAGT PAE2480 1483633 - 1482197 - | aldehyde dehydrogenase TERM 1331 1482972 - 1482985 + gH 82 -2.3 -5.4505 | opp_overlap 1482972 CTCTCGCCTGTGAAA GTGAC GTGG GACAC TTTTTTATTCACAAC TERM 1332 1483058 - 1483048 - GH 77 -8.2 -4.12188 | opp_overlap 1483053, overlap 1483049 CTACTAGGTTGAAAA CCCC CTT GGGG AACCCGGCTTGGTGT PAE2481 1483771 - 1485651 + | acetyl-coenzyme A synthetase PAE2481a 1485788 - 1485991 + | hypothetical protein PAE2483 1486470 - 1486799 + | hypothetical protein PAE2485 1486810 - 1487106 + | hypothetical protein TERM 1333 1488237 - 1488262 + G 74 -7.5 -4.07568 | gap 1, opp_overlap 1488235, overlap 1488242 CCGGTGAATTTAAGC GGCGGCGCCCTC GCA GAGGGAG-TGCC TTTTGAGGCACACGG PAE2486 1487274 - 1488416 + | acetyl-CoA acetyltransferase TERM 1334 1489540 - 1489525 - g 76 -9 -3.73783 | TAGGCAAGTCAAGAA GCCTGT CTAC ACAGGC TTGGCGCAGGCGTGG PAE2488 1488413 - 1489600 + | acetyl-CoA acetyltransferase PAE2489 1489597 - 1490136 + | protein associated with acetyl-CoA C-acyltransferase PAE2490 1490133 - 1490564 + | protein associated with acetyl-CoA C-acyltransferase TERM 1335 1491299 - 1491324 + G 70 -11.1 -2.72043 | gap 1, overlap 1491298 ACGGCGATATCTGGA GTGACCGTGGGC ATA GCCCGCGG-CGC GTTTGAGGAGGCGTT PAE2491 1490561 - 1491703 + | acyl-CoA dehydrogenase TERM 1336 1491705 - 1491695 - f 73 -4.6 -4.788 | AAACTAATCGAAAAA GGCC AGT AGCC TTACAAGCCAAGCAA PAE2493 1492090 - 1492620 + | paREP7 PAE2496 1493825 - 1493028 - | hypothetical protein TERM 1337 1494540 - 1494561 + H 73 -7.9 -4.04474 | overlap 1494543 CGTGTTCCGCCTTTG TTCCGCGCG GTTC CGCGCGTAG TTTCTATGGCAGTCT TERM 1338 1494543 - 1494558 + H 78 -11.8 -3.06418 | overlap 1494540 GTTCCGCCTTTGTTC CGCGCG GTTC CGCGCG TAGTTTCTATGGCAG TERM 1339 1495054 - 1495038 - g 79 -12.3 -3.03554 | overlap 1495040 1495049 1495050 CGAAGCAAGTAGAGA GAGGGCT GAA AGCCCTC CAGAGGGTAAAACAC TERM 1340 1495181 - 1495171 - g 70 -4.6 -4.57569 | TGAGTTGTTGAAAAA CGCC ACA GACG AGGAGGGGCTAGCAA TERM 1341 1495414 - 1495402 - g 86 -6.2 -5.14698 | overlap 1495411 1495412 AAAGGCAAAAGAAAA GGCG GAAAA CGCC TCTGAAAAAGGCAAA PAE2498 1494605 - 1495516 + | hypothetical protein PAE2499 1495559 - 1496185 + | phosphoribosyl anthranilate isomerase TERM 1342 1496366 - 1496378 + TF 84 -4.8 -5.42862 | GTCTCTACTCTTAGC CCTG CACGC CAGG TTTTTTTAGACATGT PAE2503 1497208 - 1496570 - | hypothetical protein PAE2500 1496567 - 1496764 + | paREP13 TERM 1343 1497327 - 1497304 - TR 100 -8.2 -5.12617 | overlap 1497286 1497305 CAATTATTTAAAAAA TTCTTGTCAG TAAA CTGACAAGAC AAAGGGGATCTAACG TERM 1344 1497326 - 1497305 - TR 93 -11.7 -3.66486 | overlap 1497286 1497304 AATTATTTAAAAAAT TCTTGTCAG TAAA CTGACAAGA CAAAGGGGATCTAAC PAE2504 1497530 - 1497354 - | hypothetical protein PAE2505 1497907 - 1497587 - | hypothetical protein TERM 1345 1497638 - 1497650 + g 74 -10.5 -3.15503 | overlap 1497637 CTGTCGGAGGGCCTC GCCGC GGG GCGGC TGTTGAGTATTAACA TERM 1346 1498386 - 1498375 - g 72 -4.4 -4.61482 | CTGTGGAAAAAATAA GAAG TGTG CTTC AGGGGAGGGTCAGGC PAE2506 1497957 - 1498709 + | paREP11 PAE2508 1499509 - 1498697 - | hypothetical protein TERM 1347 1499320 - 1499330 + g 75 -6.8 -4.35044 | opp_overlap 1499320 CCTCCCTCTTCAACA CCTC TAG GAGG TTTGTCTTTACGTAC PAE2509 1499696 - 1499908 + | paREP7 TERM 1348 1499996 - 1500014 + T 73 -11 -2.57132 | overlap 1499995 GTATGTGTGGGGGAC CTCTCAGC TGA GCTGAGGG CTTCTGGCGAGGCAG TERM 1349 1500273 - 1500298 + T 74 -3.3 -5.03314 | gap 1 ATAAGCTTCCCTCGG CGCTGGG-TTAG TTG CTGAGCTTAGCG TTTTTTAGAACTACA PAE2511 1500789 - 1500280 - | hypothetical protein TERM 1350 1500773 - 1500753 - G 78 -11.1 -3.48684 | opp_overlap 1500745 1500758 TTATAAGCATTACAA CAGCGGCGA GGA TCGCTGCTG TGAATAAAGATTTCA PAE2513 1500897 - 1501352 + | hypothetical protein PAE2514 1501418 - 1502005 + | hypothetical protein TERM 1351 1502015 - 1502057 + T 72 -8.5 -3.75617 | gap 1, opp_overlap 1502018 1502020, overlap 1502018 GCGTAAGTTTTTTAA CGATAGGGCGACTTCTGCCC GCCA GGGCGTAATTC-CCCTATTG TTGTTCGGCTTTTTT PAE2515 1503203 - 1502052 - | acetylornithine aminotransferase (argD) PAE2516 1503233 - 1503409 + | hypothetical protein PAE2518 1503459 - 1503689 + | hypothetical protein TERM 1352 1503815 - 1503799 - g 100 -13.7 -4.03234 | TGTCGCCGATAGAAA CGCCGAG TGG CTCGGCG TGCCCCGTCTCGTCC TERM 1353 1505051 - 1505089 + G 77 -5.9 -4.65895 | gap 1, opp_overlap 1505030 CCCGCGATGACGGTG GGAGGC-ACAGGCGACGT CTTG ACGGGGCTTGTAGCCGCC TTTTTAACTAAGACA PAE2520 1503755 - 1505260 + | hypothetical protein PAE2521 1505736 - 1505278 - | paREP8 TERM 1354 1505420 - 1505438 + g 72 -4.4 -4.60073 | opp_overlap 1505420 GCGTCGTGTACCCAA TCGCCAAG CTC CCCGGCGA TTTTGTCCTTGTATC PAE2521a 1505798 - 1505989 + | hypothetical protein PAE2522 1507144 - 1505996 - | paREP12 TERM 1355 1507858 - 1507869 + G 74 -2.2 -5.08824 | opp_overlap 1507850, overlap 1507839 1507857 CAGACAAGCCTCTTG CGGA AGCC TCTG TTTTTTACGTCGCGG PAE2525 1507704 - 1508357 + | hypothetical protein PAE2526 1509204 - 1508572 - | hypothetical protein TERM 1356 1509481 - 1509492 + G 70 -7.2 -4.07568 | CAGTTTTCCAGTCGG GCCC ACAA GGGC TTTTCCAGGACAGCA TERM 1357 1509837 - 1509849 + G 81 -4.7 -5.14965 | CCTCCACTATTACTG GCAGC ATC GCGGC TTTTTTCGTGGCCGT PAE2529 1509401 - 1509892 + | hypothetical protein PAE2531 1509879 - 1510388 + | hypothetical protein TERM 1358 1511151 - 1511131 - gf 78 -12.5 -2.74605 | opp_overlap 1511148, overlap 1511128 GGTTGTGAAAATGGA GGGCGTCAG GGG CTGTCGCCC GGTGGGCTTCGTGCC PAE2532 1510385 - 1511482 + | ribose ABC transporter, ATP-binding protein, putative TERM 1359 1511573 - 1511591 + GF 79 -2.2 -5.19251 | overlap 1511567 TGAGGTGTTGAAAAC CGCGGGGG TAT TCACAGCG TTTTTCTTCCTCTTC TERM 1360 1512015 - 1511995 - gf 79 -10.3 -3.62597 | opp_overlap 1511996, overlap 1511996 GGGACGTGTTAATAA TCGCGGCAG TTG CCGCCGCGT TTTTACTCTCCGCGG TERM 1361 1511996 - 1512014 + GF 100 -11.6 -4.8048 | opp_overlap 1511995 1511996 GGACGTGTTAATAAT CGCGGCAG TTG CCGCCGCG TTTTTACTCTCCGCG TERM 1362 1512014 - 1511996 - gf 85 -13.8 -2.77344 | opp_overlap 1511996, overlap 1511995 GGACGTGTTAATAAT CGCGGCAG TTG CCGCCGCG TTTTTACTCTCCGCG PAE2534 1511454 - 1512047 + | hypothetical protein PAE2535 1512125 - 1513474 + | phosphomethylpyrimidine kinase PAE2536 1514219 - 1513500 - | hypothetical protein PAE2539 1514264 - 1515112 + | hypothetical protein PAE2540 1516191 - 1515109 - | hypothetical protein TERM 1363 1516217 - 1516189 - G 100 -14.1 -3.90744 | opp_overlap 1516186, overlap 1516191 TCTGTCCCTAAACAA CATAGGTATGTAG TTA CTACATACCTATA AAGTTTATGAAGAGA TERM 1364 1516215 - 1516191 - G 100 -14.5 -3.54488 | opp_overlap 1516186, overlap 1516189 TGTCCCTAAACAACA TAGGTATGTAG TTA CTACATACCTA TAAAGTTTATGAAGA PAE2541a 1516462 - 1517208 + | hypothetical protein PAE2544 1517144 - 1518958 + | hypothetical protein PAE2546 1519215 - 1519691 + | paREP11 PAE2547 1519867 - 1519724 - | hypothetical protein PAE2548 1519912 - 1520274 + | hypothetical protein PAE2549 1520863 - 1520294 - | hypothetical protein TERM 1365 1521002 - 1521017 + G 70 -5.4 -4.32678 | AATTTCTCCGCCGGG GCTTCT ACCC AGAGGC TTGTTTCTTTGCGCA PAE2550 1520935 - 1521297 + | hypothetical protein TERM 1366 1521357 - 1521345 - g 71 -3.3 -4.84761 | overlap 1521346 1521347 AGACGTGGATAAAAA GGCTC TGC GAGCA GGGCTACACAGTAGT PAE2551 1521287 - 1521679 + | hypothetical protein TERM 1367 1522767 - 1522777 + G 72 -8.2 -3.74693 | overlap 1522758 ACAGCGCCCATGGTG GCCC TAG GGGC TTTAGTGGGCTCAAA PAE2552 1522164 - 1522898 + | hypothetical protein TERM 1368 1523121 - 1523131 + G 75 -5.4 -4.66535 | CAGATAGGGACAAGG CAAC TGC GTTG TTTATTTTCGCAATT PAE2553 1522895 - 1523188 + | hypothetical protein PAE2556 1523720 - 1525009 + | glutamine synthetase PAE2557 1525307 - 1526353 + | asparagine synthetase A PAE2559 1527542 - 1526457 - | tetracycline resistance protein TERM 1369 1526881 - 1526864 - G 77 -6.9 -4.44797 | overlap 1526866 TTATTAACATCAAAA CGCCCAG ATCG CTGGGAG CCATTTTGAACACAT TERM 1370 1527383 - 1527365 - G 77 -10.2 -3.60627 | CGATTCTATCTGAAA GCGCCCCC CAG AGAGGCGC AGAGACCATTTGTAC PAE2560 1528414 - 1527584 - | hypothetical protein TERM 1371 1528251 - 1528220 - G 72 -5.1 -4.57073 | gap 1, opp_overlap 1528238, overlap 1528205 CAGGGTTTTGAAAAA CGCCGATATGACGC GGCCG GCGCC-CATTGGCG GCTTGTTCGCCAGGA TERM 1372 1528391 - 1528355 - G 71 -3.1 -4.82901 | gap 1, overlap 1528356 1528357 GCCCTTGTACAAAAA CGTTGCGATTATCCAC AACACA GTG-ATTATCGCAAGG ACATCTATGATGAAC PAE2561 1528544 - 1528759 + | adenylylsulfate reductase beta subunit part 1, authentic frameshift PAE2562 1528762 - 1529034 + | adenylylsulfate reductase beta subunit part 2, authentic frameshift TERM 1373 1530058 - 1530044 - g 74 -10 -3.54741 | opp_overlap 1530044 GAGGAGTCCCTTAAA GTCCTC TTC GAGGAC TATCTGGACATGACG PAE2563 1529036 - 1530424 + | adenylylsulfate reductase PAE2564 1530431 - 1530919 + | adenylylsulfate reductase alpha subunit part 2, authentic frameshift TERM 1374 1531116 - 1531134 + G 76 -7.4 -4.28254 | GGCTGTTATACACGC CGGCGA TTGGACC TCGCCG TTTTCAATGTTAAAA PAE2565 1531015 - 1531518 + | hypothetical protein PAE2566 1531862 - 1531527 - | siroheme-sulfite reductase gamma subunit-like protein TERM 1375 1531772 - 1531785 + g 76 -8.1 -4.18018 | CAGCCACTTTTTCGT CCCAG TCCT CTGGG TTTTGCATAAAACAG PAE2568 1531993 - 1532343 + | hypothetical protein PAE2569 1532610 - 1532344 - | glutathione-S-transferase-like protein PAE2571 1533965 - 1532817 - | sulfite reductase beta subunit TERM 1376 1533612 - 1533622 + g 75 -6.8 -4.39828 | ACCCCACCCTCCCAC TGGG AAG CCCA TTTTCTCCACCTCTT PAE2572 1535209 - 1533962 - | sulfite reductase alpha subunit TERM 1377 1535036 - 1535046 + g 78 -8.2 -4.2558 | overlap 1535029 TTTTACGGCTGCTGG GCCC CAG GGGC TTTTCCTAGCCACTA PAE2573 1536011 - 1535352 - | uroporphyrin-III C-methyltransferase PAE2574 1536370 - 1536116 - | hypothetical protein PAE2575 1537170 - 1536367 - | phosphoadenosine phosphosulfate reductase TERM 1378 1536578 - 1536603 + g 84 -7.8 -4.64048 | opp_overlap 1536583 GTATAGCCGCGATCG TATAATTTGC AGTATG GCAAATTATA TTTCTTTATATACTG PAE2576 1537783 - 1537172 - | hypothetical protein PAE2577 1539384 - 1537780 - | ferredoxin-nitrite reductase TERM 1379 1539148 - 1539162 + g 70 -7.1 -4.13767 | CAATTCCCCAATTCT CCGCA ATTGA TGCGG TTTTAAAATACCACC PAE2578 1539494 - 1540360 + | hypothetical protein PAE2580 1540457 - 1540723 + | hypothetical protein PAE2582 1540714 - 1541409 + | thiosulfate sulfurtransferase TERM 1380 1541703 - 1541658 - g 70 -7.3 -4.03234 | opp_overlap 1541661 1541670 1541699, overlap 1541659 GGGGCTTTACAGAAA CGCCGCCGGCAGGGCGTTTCA GGCG TGGAGAGCCTTGCTGGCGGCC ATCGCCGTGGATTAC TERM 1381 1541702 - 1541659 - g 72 -10.8 -3.01726 | opp_overlap 1541661 1541670 1541699, overlap 1541658 GGGCTTTACAGAAAC GCCGCCGGCAGGGCGTTTCA GGCG TGGAGAGCCTTGCTGGCGGC CATCGCCGTGGATTA PAE2584 1541596 - 1541847 + | paREP1 PAE2587 1543165 - 1542038 - | cobyrinic acid a,c-diamide synthase (cbiA) part 2, authentic frameshift TERM 1382 1543262 - 1543245 - R 76 -8.4 -4.13767 | opp_overlap 1543231 1543245 1543244 GGCCCGATTTTAAAA GGGGCT ATTTTA AGCCCC CTTTTAGCCAGTCCG PAE2589 1543347 - 1543249 - | cobyrinic acid a,c-diamide synthase (cbiA) part 1, authentic frameshift PAE2590 1543975 - 1543397 - | hypothetical protein PAE2592 1544444 - 1544052 - | hypothetical protein TERM 1383 1544505 - 1544523 + Gr 70 -6.6 -4.09511 | opp_overlap 1544488 1544505 GGGTTGTTGTCACAA GCCCCTTC GCG GGAGAGGC TTTTACAAGAGTGTT TERM 1384 1545091 - 1545071 - gR 72 -9 -3.53012 | opp_overlap 1545071, overlap 1545086 1545088 GGCCCTGCGGTGAAA GCCGCGTT GGAAA AACACGGC TTAAATGCCGCAGTC PAE2594 1545958 - 1545137 - | uroporphyrinogen-III synthase (hemD), conjectural PAE2593 1544486 - 1545193 + | uroporphyrinogen-III synthase (hemD), conjectural TERM 1385 1545410 - 1545422 + gF 73 -9.1 -3.64703 | TAAAAACCTCCTCGC CGCCT CCA AGGCG TTTGCCTCGGGGGCC TERM 1386 1545430 - 1545444 + gF 72 -9.2 -3.49475 | CCAAGGCGTTTGCCT CGGGGG CCT CCTCCG TTGTGTAGACCTGGA PAE2596 1546018 - 1547262 + | sulfite reductase alpha subunit TERM 1387 1547612 - 1547602 - g 75 -6.8 -4.39828 | AAGAGGTGGAGAAAA TGGG CTT CCCA GTGGGAGGGTGGGGG TERM 1388 1548117 - 1548101 - g 77 -10.1 -3.58343 | TTTAGTAGGCGGAAA GGCCAGC AAC ACTGGCC GCGGCCCCATGCCCT PAE2597 1547259 - 1548374 + | sulfite reductase beta subunit PAE2598 1548376 - 1548861 + | hypothetical protein PAE2599 1549001 - 1549696 + | hypothetical protein PAE2600 1550096 - 1549674 - | hypothetical protein PAE2601 1550320 - 1550093 - | hypothetical protein PAE2602 1550445 - 1550696 + | hypothetical protein TERM 1389 1550905 - 1550875 - g 72 -10.5 -3.08679 | gap 2, opp_overlap 1550896 1550898, overlap 1550860 1550886 CGCCCCCAGGGAAGA CGCGGCGATAATGCC TGG GGC-TT-CCGCCGCG CTGAGGCGGTATTTC TERM 1390 1550898 - 1550914 + G 71 -9.3 -3.45324 | opp_overlap 1550875, overlap 1550896 TAATGCCTGGGGCTT CCGCCGC GCT GAGGCGG TATTTCCTAGACGTG TERM 1391 1551532 - 1551498 - g 72 -6.5 -4.35042 | gap 1, opp_overlap 1551477, overlap 1551502 TTTACGACAAAATAA GAGAGGGCTTCGTG GTCGTGGT CACGAGGCCCT-TC GGCGAATTGGCCTAC TERM 1392 1552208 - 1552222 + G 77 -10 -3.65046 | overlap 1552206 1552190 ATGGCCCGGGCGAGG GCCAAG GCC CTTGGC TTGTTGGGATACGCC PAE2603 1550693 - 1552399 + | hypothetical protein TERM 1393 1552618 - 1552606 - g 84 -10.5 -3.74077 | CTGGAGATATTCAAA GCGGC GAA GCCGC TGGGGGTAAAGGTGG PAE2604 1552396 - 1552764 + | hypothetical protein PAE2605 1553193 - 1552837 - | hypothetical protein TERM 1394 1553270 - 1553283 + G 75 -4.5 -4.82901 | CGCCTCTATTTTAGA CTACC GGCC GGTGG TTTTTCTAGACGGCG PAE2606 1553244 - 1553708 + | hypothetical protein sat 1553761 - 1555128 + | sulfate adenylyltransferase PAE2610 1555125 - 1555469 + | hypothetical protein PAE2614 1555800 - 1556558 + | nitrate reductase gamma subunit (narI) TERM 1395 1556637 - 1556659 + F 79 -9 -4.15044 | opp_overlap 1556633 1556631 1556642, overlap 1556639 GAGGCACAACACGCA CACGAGGCGG TTT CCGCCCCGTC TTTGTTCAAAGCCGC TERM 1396 1556639 - 1556657 + F 93 -11.6 -3.6761 | opp_overlap 1556633 1556631 1556642, overlap 1556637 GGCACAACACGCACA CGAGGCGG TTT CCGCCCCG TCTTTGTTCAAAGCC TERM 1397 1556654 - 1556642 - f 71 -10.5 -2.67055 | opp_overlap 1556639 1556637, overlap 1556633 1556631 ACAACACGCACACGA GGCGG TTT CCGCC CCGTCTTTGTTCAAA PAE2615 1556894 - 1557115 + | paREP13 TERM 1398 1557591 - 1557601 + G 74 -8.2 -3.97709 | AGGAATCAGGGGACT GGCC CGA GGCC TTGTTATTACCTCCT PAE2616 1557134 - 1558144 + | iron-sulfur binding reductase, degenerate TERM 1399 1558361 - 1558345 - f 76 -8.1 -4.16284 | opp_overlap 1558345 1558344 1558341 1558327 ATAGCTGGCAATAAA TTCGAAT TCT ATTCGAA ATTTATTTCGCAGAT PAE2618 1558429 - 1559571 + | flavoprotein reductase, conjectural PAE2619 1559568 - 1560023 + | hypothetical protein PAE2620 1560548 - 1560036 - | hypothetical protein TERM 1400 1560299 - 1560315 + g 83 -10.1 -4.03234 | opp_overlap 1560292 1560294 GAAGTAGAGACGCCA CGGCCTC GGC GAGGTCG TTTCTATAAGGCCCC TERM 1401 1561331 - 1561315 - g 70 -3.5 -4.63218 | overlap 1561281 1561316 GTCCGCTTAATAAAA GCCGCGG TCA CTGCGGT GGAAATTAGGGGCAG TERM 1402 1561593 - 1561563 - g 81 -8.8 -4.36914 | opp_overlap 1561569, overlap 1561564 1561565 GCGCTTCTTAGAAAA CGCCGCCGCCAGAC AAG GCGTTGTGGCGGCG GTAAACGCCATGGGG TERM 1403 1561976 - 1561992 + G 70 -5.7 -4.38712 | ACGGAGAGGCCCTGA GGCTGGC CGC GCTTGCC TTTTATACAGATCCC PAE2623 1560631 - 1562034 + | mercuric reductase TERM 1404 1562387 - 1562355 - g 72 -7 -4.23054 | gap 1, opp_overlap 1562355 1562378 AGACATGAGGGAAAA GGCGTGGT-CTCCTT CGCC AAGTCGCACCACGCC TTCGTCGAGCTGTTA PAE2626 1562190 - 1562516 + | hypothetical protein TERM 1405 1562519 - 1562509 - T 77 -6.8 -4.42653 | AGCTGATTTACAAAA GGCT TTG AGCC TCTAAAATTATTTTT PAE2628 1563691 - 1562501 - | flavoprotein reductase, conjectural TERM 1406 1563534 - 1563548 + g 79 -3.6 -5.11033 | overlap 1563535 TCTATTACTACTACG TCTAAA CCC TTTAGG TTTTTTACAATTGTA TERM 1407 1563666 - 1563630 - G 91 -10.7 -4.15044 | opp_overlap 1563629 1563630 1563658, overlap 1563632 GGTCTTGTCAACAAA TAGCCGCCGACAGCGCC CGC GGCAATGGCGGCGACGA ATTTTAGAAAATCTC TERM 1408 1563664 - 1563632 - G 93 -13.3 -3.6761 | opp_overlap 1563630 1563629 1563658, overlap 1563630 TCTTGTCAACAAATA GCCGCCGACAGCGCC CGC GGCAATGGCGGCGAC GAATTTTAGAAAATC PAE2630 1564443 - 1563688 - | hypothetical protein TERM 1409 1564167 - 1564146 - G 75 -11.5 -2.92642 | opp_overlap 1564152, overlap 1564122 AGGAGTAGTTATACA GCCCAAGCC CCAG GGCTAGGGC ATCGCCGGGGCTGAC PAE2631 1565738 - 1564440 - | hypothetical protein PAE2632 1566762 - 1565740 - | hypothetical protein PAE2633 1566857 - 1567102 + | hypothetical protein PAE2634 1567110 - 1567484 + | hypothetical protein TERM 1410 1568602 - 1568621 + G 85 -11.4 -3.68341 | gap 1, opp_overlap 1568599 1568598, overlap 1568613 TTTGGCGGAAATGTC GCCGCAGGC GCC GCC-GCGGC TTATTCAGTGGCGTT PAE2635 1567486 - 1568733 + | putative inner membrane protein TERM 1411 1568827 - 1568842 + G 72 -11.8 -2.54523 | opp_overlap 1568825 TACGTTTATAGTAGT GGGCGG GGGC CCGCCC TCAATTGCCCTATAC PAE2637 1568726 - 1569904 + | hypothetical protein PAE2638 1569880 - 1570506 + | senC-like protein TERM 1412 1570929 - 1570906 - g 70 -5.9 -4.24002 | opp_overlap 1570905 1570906 CCCCAAATGCCAAAA TCCCCGGCG ACTTAA CGCTGAGGA CTTTTTCAATAATAA PAE2640 1570611 - 1571180 + | hypothetical protein PAE2641 1571745 - 1571185 - | hypothetical protein TERM 1413 1571366 - 1571379 + g 75 -6.7 -4.44046 | ATCAGCAAAGCCCCC GCAGT CCCC ACTGC TTTATTTAGCCTGGG TERM 1414 1571467 - 1571431 - G 90 -7.8 -5.00616 | opp_overlap 1571431 1571432, overlap 1571418 1571416 1571432 GCCCTCTTCAAAAAA GGCGGCTCCCAAGGCC CATAT GGCCACGGGAACTGCG TTTAGCCCCGATGTG TERM 1415 1571466 - 1571432 - G 85 -11.3 -3.60048 | opp_overlap 1571432 1571431, overlap 1571416 1571431 CCCTCTTCAAAAAAG GCGGCTCCCAAGGCC CATAT GGCCACGGGAACTGC GTTTAGCCCCGATGT TERM 1416 1571572 - 1571554 - G 70 -5.8 -4.29304 | overlap 1571555 CCACCACAACATAAA GGCGGCGC CTA GAGCCGCA AACGCGTATAGAATT PAE2643 1571841 - 1572713 + | lipoyl synthase TERM 1417 1573285 - 1573269 - g 93 -2.1 -5.65927 | opp_overlap 1573271, overlap 1573271 TATTTAAAGAAAAAA GAGGTGG TGG CCGCCTA TATAGGAGACGGCGG TERM 1418 1573283 - 1573271 - g 70 -4.7 -4.45696 | opp_overlap 1573271, overlap 1573269 TTTAAAGAAAAAAGA GGTGG TGG CCGCC TATATAGGAGACGGC PAE2644 1572744 - 1573862 + | pyruvate dehydrogenase E1 alpha subunit PAE2646 1573862 - 1574824 + | pyruvate dehydrogenase E1 beta subunit TERM 1419 1575552 - 1575540 - g 74 -3.3 -4.93296 | CGACGAGGAGAAAAA CGCCA TTG TGGTG AAAAAAGAGGTGAAT PAE2648 1574824 - 1575975 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 1420 1576437 - 1576423 - g 74 -10 -3.42503 | GGGTAATAGGGACAA GGGAGA TTT TCTCCC TTGAGGAGCCCCCCG PAE2649 1575972 - 1577330 + | pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) TERM 1421 1577564 - 1577542 - g 71 -11.2 -2.90763 | opp_overlap 1577545, overlap 1577545 GGGAGACGCCACATA CCACGGCCCG GGA CAGGCCGTTG TGTACCCAATAGTGG TERM 1422 1577561 - 1577545 - g 73 -11.5 -2.69977 | opp_overlap 1577545, overlap 1577542 AGACGCCACATACCA CGGCCCG GGA CAGGCCG TTGTGTACCCAATAG TERM 1423 1577545 - 1577561 + G 71 -9.3 -3.48924 | opp_overlap 1577545 1577542 AGACGCCACATACCA CGGCCCG GGA CAGGCCG TTGTGTACCCAATAG PAE2651 1577327 - 1578001 + | lipoate protein ligase B TERM 1424 1578006 - 1577995 - f 71 -7.2 -4.17958 | opp_overlap 1577994 1577991 AAGAGTTGCAATAAA CGCC TGAG GGCG CGTATTTAAAAGTGT PAE2653 1578062 - 1578307 + | hypothetical protein PAE2655 1578568 - 1579128 + | hypothetical protein TERM 1425 1579853 - 1579868 + G 76 -7.5 -4.2586 | CGGAGTGCTCACTGT GCGCG GGCCCA CGCGC TTTCTATTACTCTCC PAE2656 1579149 - 1580018 + | pirin-like protein PAE2658 1580015 - 1580812 + | hypothetical protein PAE2659 1581493 - 1580933 - | formate dehydrogenase protein fdhE PAE2660 1582184 - 1581480 - | hypothetical protein TERM 1426 1581854 - 1581865 + g 74 -5.8 -4.49556 | GCCTAATTAGCGCCT TGGC CTCC GCCA TTTGTTTGCTGAGCG PAE2661 1583066 - 1582221 - | formate dehydrogenase beta subunit PAE2662 1586575 - 1583072 - | formate dehydrogenase alpha subunit TERM 1427 1583801 - 1583778 - G 70 -6.7 -4.13728 | TATACAGGCTTAAAA CTCCTCCAG TCACCG CCGGAGAAG AAAGGCCTCTTCAAA TERM 1428 1585991 - 1586015 + g 74 -8.6 -3.86346 | opp_overlap 1585988 1585991 GTTGACTAAAATTGA CGACCCAATT ATTTG AATTGGGACG TTTCTCCCCACGTAA TERM 1429 1586058 - 1586078 + g 77 -9.7 -3.69354 | overlap 1586061 TTTTGCTTCGGGGAG CCAGTGGAG GCC CTCCACTCG TTTAGAATTCTCGCC PAE2664 1587489 - 1586785 - | formate dehydrogenase delta subunit PAE2665 1588004 - 1587468 - | hypothetical protein PAE2668 1588143 - 1588583 + | hypothetical protein TERM 1430 1588917 - 1588960 + G 100 -14.4 -5.00616 | opp_overlap 1588906 1588907 AGAAGTGGCGGCGGC CGCCGGGCTCAACGTGGCGT CGCT AGGCCACGAGGCGCCTGGCG TTTTTTACAAGGGGC TERM 1431 1589341 - 1589310 - g 77 -5.8 -4.65838 | overlap 1589299 GAGAGAGGTGAAAAA CCCCTTTGACGTCA TCGC CGAGGTCAAGGGAG AGGACCTCTCTAGGT PAE2669 1588612 - 1589391 + | hypothetical protein TERM 1432 1589450 - 1589419 - T 73 -4.6 -4.87665 | gap 2 TCGCAGTTACAAAAA CCG-CTTG-AGCTT TTCCAC AAGCTTCAAGACGG CCTCCCTATGTAGCT PAE2671 1589766 - 1589410 - | paREP8 PAE2672 1589896 - 1590585 + | hypothetical protein TERM 1433 1591027 - 1591058 + G 79 -4.6 -4.92783 | gap 2, opp_overlap 1591049 AACTCCACAGAGACG CCGTCTTGAAGCTT GTGGAA AAGCT-CAAG-CGG TTTTTGTAATCCGTT PAE2673 1590606 - 1591067 + | paREP8 PAE2676 1591882 - 1591505 - | hypothetical protein PAE2678 1592229 - 1591879 - | hypothetical protein PAE2679 1592833 - 1592309 - | transcriptional regulator, conjectural PAE2680 1593360 - 1592818 - | hypothetical protein TERM 1434 1592944 - 1592965 + g 71 -9.5 -3.51076 | GCTTGATTCCAGCAT GGGGAACAA GACG TTGTTCTCC TTCATTATGTGCTCC PAE2682 1593902 - 1593573 - | hypothetical protein TERM 1435 1593871 - 1593859 - G 70 -4.9 -4.56775 | ATCGTCGTCCAAAAA TGTTT TAG AAACA TGACGGGGAGTAAAA PAE2684 1594628 - 1594344 - | transcriptional regulator, conjectural PAE2685 1595376 - 1594684 - | hypothetical protein TERM 1436 1594942 - 1594959 + g 74 -9.8 -3.48276 | CCCCAGCTCCAGCCC GCCGGG CCGCGC CCCGGC TTCTCTCAACAGAGA TERM 1437 1595001 - 1595014 + g 77 -5.9 -4.72272 | overlap 1595002 GAGGCAACGTGTCCA TGGCG TAGC CGCCG TTTTTCCTAGGCCAC PAE2686 1595780 - 1595400 - | hypothetical protein TERM 1438 1595589 - 1595599 + g 77 -8.2 -4.11216 | overlap 1595585 CCTCTCCATAAGCTC GGCC GTG GGCC TTTTGAAAATAGCCG PAE2687 1596772 - 1595777 - | alcohol dehydrogenase (Zinc) TERM 1439 1596368 - 1596380 + g 77 -6.9 -4.56775 | opp_overlap 1596328 1596327, overlap 1596367 CTTGAGATCGGCCCT CGTCG CCA CGGCG TTTTTGGCGGGGACT TERM 1440 1596757 - 1596735 - G 73 -9.2 -3.58343 | TCTACCAGCTTTAAA TTCTCAAGCC CTG GGGTTGAGAA CGCGGCCGCCCTCAT PAE2688 1597689 - 1596769 - | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, conjectural TERM 1441 1596835 - 1596846 + g 70 -5.8 -4.17089 | CACCTCGGCCTCTAC CACG TCGC CGTG TTTTAAGAATTTGCC TERM 1442 1597385 - 1597424 + g 70 -5.7 -4.4017 | gap 1, opp_overlap 1597410, overlap 1597380 1597374 1597406 GGCTTCACGCCGGCC TCTTGGCCGTGTGCTTTG TAATT CACCGC-CACGGCGAAGA TTTTCTCAGGGTTCG PAE2689 1598872 - 1597757 - | hypothetical protein TERM 1443 1598045 - 1598030 - G 75 -11.8 -3.00946 | overlap 1598027 CCCGTGGACAAAGGA GGCGCC TGAA GGCGCC CAAGTCTCACTGCCC TERM 1444 1598684 - 1598672 - G 70 -10.5 -2.82449 | overlap 1598671 GCTTATTAACACAAG GCGGC CTG GCCGC TCAGTCACTAAGTAC PAE2690 1598973 - 1599437 + | iron-sulfur protein, putative PAE2691 1599846 - 1599412 - | hypothetical protein PAE2693 1601345 - 1599843 - | 4-hydroxyphenylacetate-3-hydroxylase, conjectural TERM 1445 1600827 - 1600838 + g 70 -5.8 -4.20749 | CTCCTCCACCACTCT GACG TAGG CGTC TTTATTGGGCTGTTC PAE2695 1602082 - 1601630 - | hypothetical protein PAE2696 1602414 - 1603310 + | pseudocatalase PAE2697 1604045 - 1603314 - | transport protein, putative PAE2699 1604662 - 1604039 - | iron (III) ABC transporter ATP-binding protein, putative TERM 1446 1604772 - 1604754 - H 85 -6.8 -5.00616 | opp_overlap 1604754 1604757 TTTTTCTTCAAAAAA GCATTAAC AAT GTTAATAC TTTAAAATTCAAAAC TERM 1447 1604872 - 1604928 + G 100 -14.5 -3.50853 | opp_overlap 1604879 1604882 CGGCGGTATTGGCGT TACAGAATTACCCC-GCGCAGACGCCG CAATC CGGCGCC-GCGCAGGGGAAGTTCCGTA TTGTCGTTAACCCGG TERM 1448 1604920 - 1604879 - g 100 -16.6 -3.48395 | gap 1, opp_overlap 1604872, overlap 1604882 ATTGGCGTTACAGAA TTACCCCGCGCAGACGCCG CAATC CGGCG-CCGCGCAGGGGAA GTTCCGTATTGTCGT TERM 1449 1604917 - 1604882 - g 100 -18.3 -2.88822 | gap 1, opp_overlap 1604872, overlap 1604879 GGCGTTACAGAATTA CCCCGCGCAGACGCCG CAATC CGGCG-CCGCGCAGGG GAAGTTCCGTATTGT PAE2700 1604799 - 1605785 + | hypothetical protein PAE2701 1605821 - 1606312 + | hypothetical protein PAE2702 1606370 - 1606801 + | hypothetical protein TERM 1450 1607177 - 1607167 - g 85 -8.2 -4.46576 | AAAAATGATAATAAA CGGC AAG GCCG CAATACGCCGTATTG PAE2703 1606961 - 1608058 + | hypothetical protein PAE2705 1608278 - 1608051 - | hypothetical protein PAE2706 1608529 - 1608233 - | ferredoxin oxidoreductase, conjectural TERM 1451 1608369 - 1608323 - GR 71 -10.7 -2.64243 | opp_overlap 1608332 GGAGAGCTTATACCA CGGCACTAGGGGGAGCCTCTC GGCTT GCGAGGCTCTCCTTATAGCCG CCACTGGGCACACGA TERM 1452 1608332 - 1608360 + gr 89 -13.1 -3.28924 | opp_overlap 1608323 ATACCACGGCACTAG GGGGAGCCTCTCG GCT TGCGAGGCTCTCC TTATAGCCGCCACTG PAE2707 1608885 - 1608595 - | hypothetical protein PAE2708 1609151 - 1608885 - | hypothetical protein TERM 1453 1608944 - 1608928 - GR 81 -4.3 -5.07107 | overlap 1608929 1608930 1608933 CAAATTTCTAAAAAA GTCAACG GCC CGCTGGC CTTAAACCCCGGGGG PAE2711a 1609342 - 1609118 - | hypothetical protein TERM 1454 1609159 - 1609184 + grH 93 -6.1 -5.252 | overlap 1609162 TCATCCATCCCCCCT CAAGCTCGTTG AACT CAACCAGCTCG TTTTTTGTAAACCTA PAE2712 1609858 - 1609397 - | hypothetical protein PAE2713 1609852 - 1610178 + | 4a-hydroxytetrahydrobiopterin dehydratase TERM 1455 1610455 - 1610465 + G 71 -2.4 -5.01732 | ACGTCGCTTATGAAG CCGC GCT GAGG TTTTTTAAAGGAGTT PAE2715 1610178 - 1611008 + | cation efflux system protein PAE2716 1611076 - 1611621 + | paREP1 PAE2717 1613635 - 1611632 - | hypothetical protein TERM 1456 1613684 - 1613663 - H 86 -10.9 -3.77806 | gap 1, opp_overlap 1613676 1613681, overlap 1613661 TTCTACATTAAAATA CCACCTCTCG CCG CG-GAGGTGG GCGCGTGGCCCCCGC PAE2718 1613797 - 1614285 + | paREP1 PAE2723 1615483 - 1614998 - | hypothetical protein TERM 1457 1615248 - 1615223 - G 70 -6.1 -4.22407 | gap 1, overlap 1615204 CATTAAAAGCACAAA TGCCG-CCGCAA AAA TAGCGGTCAGCA CAAGCGGAGGAATCA PAE2724 1617084 - 1615483 - | hypothetical protein TERM 1458 1615867 - 1615844 - G 79 -9.8 -3.71686 | opp_overlap 1615850, overlap 1615847 1615850 TTTAACGCAATAGAA TAATAATCAG AATT CTGATTATTA CGACCTAATATGGCT TERM 1459 1617129 - 1617088 - R 72 -10.7 -2.88544 | gap 1 CGTCATGCCCACAGA CGTCCCCTATCCCCCCCGGG CGC CCCGGGGGACAC-GGGGCCC CGGATCGCCAGAGGC TERM 1460 1617461 - 1617473 + r 74 -10.5 -3.16055 | opp_overlap 1617458 1617456 TTTGAACAAAGACGG GGCGG AAG CCGCC TTGCTCAGCAATTTG TERM 1461 1617613 - 1617571 - R 90 -15 -2.71011 | opp_overlap 1617546 1617543 1617577 1617577 1617580, overlap 1617543 1617576 1617580 1617587 ATTTTTCGTGAATCA GGTAATCTATCAGGAACCTG AGT CAGGTTCCTGATACGTTTCC TGATCGATGAAAAAA TERM 1462 1617608 - 1617576 - R 79 -12.1 -3.13164 | opp_overlap 1617577 1617577 1617580, overlap 1617571 1617580 1617587 TCGTGAATCAGGTAA TCTATCAGGAACCTG AGT CAGGTTCCTGATACG TTTCCTGATCGATGA TERM 1463 1617577 - 1617607 + r 93 -15.6 -2.87527 | opp_overlap 1617576 1617571 1617580 1617587, overlap 1617577 1617580 CGTGAATCAGGTAAT CTATCAGGAACCTG AGT CAGGTTCCTGATAC GTTTCCTGATCGATG TERM 1464 1617577 - 1617608 + r 100 -15.4 -3.79747 | gap 1, opp_overlap 1617576 1617571 1617580 1617587, overlap 1617577 1617580 CGTGAATCAGGTAAT C-TATCAGGAACCTG AGT CAGGTTCCTGATACG TTTCCTGATCGATGA TERM 1465 1617580 - 1617604 + r 100 -17.3 -2.68775 | opp_overlap 1617576 1617571 1617580 1617587, overlap 1617577 1617577 GAATCAGGTAATCTA TCAGGAACCTG AGT CAGGTTCCTGA TACGTTTCCTGATCG TERM 1466 1617604 - 1617580 - R 100 -17.3 -2.5602 | opp_overlap 1617580 1617577 1617577, overlap 1617576 1617571 1617587 GAATCAGGTAATCTA TCAGGAACCTG AGT CAGGTTCCTGA TACGTTTCCTGATCG PAE2726 1618208 - 1617678 - | hypothetical protein PAE2728 1618627 - 1619313 + | hypothetical protein TERM 1467 1620801 - 1620764 - g 72 -11.1 -3.02471 | gap 1, overlap 1620760 CTTGTATCACAGAGA GCCGCACCCCTCGGGGGC CGA GGCCACG-GGGGCGCCGC AGATGATCTCAGTGA PAE2730 1619652 - 1621037 + | selenium binding protein, PAE2731 1621041 - 1621577 + | hypothetical protein PAE2732 1622104 - 1621616 - | bacterioferritin comigratory protein TERM 1468 1622195 - 1622227 + H 75 -9.6 -3.52918 | opp_overlap 1622195, overlap 1622191 1622202 TTGTATTACCTAAAA TATTAAATTAAAAT TCTAT ATTTTAATTTAATA TTAATTTAAGGATTC TERM 1469 1622227 - 1622195 - H 87 -9.6 -4.21194 | opp_overlap 1622195 1622191 1622202 TTGTATTACCTAAAA TATTAAATTAAAAT TCTAT ATTTTAATTTAATA TTAATTTAAGGATTC TERM 1470 1622534 - 1622548 + G 72 -10 -3.30903 | opp_overlap 1622521 1622536 AAGGGCATTTCCAAC GACCAC ACA GTGGTC TTATACGGCGATTTT PAE2733 1622312 - 1623157 + | thiosulfate sulfurtransferase PAE2734 1623535 - 1623185 - | Rieske iron sulfur protein, putative PAE2735 1623594 - 1623848 + | hypothetical protein PAE2736 1623848 - 1625713 + | 2-oxoacid ferredoxin oxidoreductase alpha subunit PAE2737 1625703 - 1626656 + | 2-oxoglutarate ferredoxin oxidoreductase subunit beta PAE2740 1626952 - 1627413 + | paREP5a PAE2741 1627423 - 1627692 + | paREP5b PAE2742 1627811 - 1628143 + | hypothetical protein TERM 1471 1628839 - 1628849 + G 72 -8.2 -3.74693 | opp_overlap 1628837 1628839 GCTTGGCGATAAAGA GGGG AAA CCCC TTTACTGAAATGAAG fumC 1628145 - 1629473 + | fumarate hydratase PAE2744 1630874 - 1629885 - | thioredoxin reductase (trxB) TERM 1472 1630105 - 1630095 - G 71 -2.4 -5.0133 | opp_overlap 1630103 1630104 GATCCTTTTAAAAAA CTCC GCA GGCG GCTCCGCGCCGATTT TERM 1473 1630373 - 1630344 - G 88 -11.3 -3.72027 | gap 1 ATTTGTGAGCAATAA GGCGGCTTGCGCCG CGG CGTCGCC-GCCGCC CATGACGGCTACCAC PAE2746 1631228 - 1631049 - | ribosomal protein L24, conjectural PAE2747 1631861 - 1631265 - | hypothetical protein PAE2748 1631965 - 1632441 + | hypothetical protein TERM 1474 1633072 - 1633083 + G 73 -3.6 -4.82901 | overlap 1633077 GTCACGTTCCCATAT TGGC CGTC GCCG TTTTTGTCAACGGCG TERM 1475 1633077 - 1633100 + G 74 -10.3 -3.54129 | overlap 1633072 GTTCCCATATTGGCC GTCGCCGTT TTTGTC AACGGCGGC TTTGGAGAAGATGTG PAE2750 1632711 - 1633220 + | hypothetical protein TERM 1476 1634073 - 1634089 + G 90 -7.9 -4.95854 | opp_overlap 1634061 CAATGGCGTTATTCG CCTCCCC TAT GGAGAGG TTTTTGACTTTTTTC PAE2751 1633202 - 1634227 + | cytochrome C-type biogenesis protein (ccdA), conjectural PAE2753 1634659 - 1634985 + | hypothetical protein PAE2754 1635507 - 1635106 - | hypothetical protein PAE2755 1635721 - 1635497 - | hypothetical protein TERM 1477 1635983 - 1636025 + G 91 -11.4 -4.07687 | gap 2, opp_overlap 1635983 CGCCGCCGAGAGATA CGGCT-TGAGGCGG-GGGAG CTATC CTCTCGCCTCCTCACAGCCG TTTTAAAGCCGGCAT PAE2756 1635846 - 1636031 + | hypothetical protein TERM 1478 1637162 - 1637143 - g 84 -4.2 -5.26316 | gap 1 CCAGTGGAGAAAAAA GCCGGCGAC TTA GTC-CTGGC GGGCACCGTATTAAT TERM 1479 1637289 - 1637308 + G 70 -3.6 -4.65895 | gap 1 GCCTATACAGAGACT CGTC-GATA GGG TATCCGGCG TTTTTACCTGGGCAG TERM 1480 1637579 - 1637561 - g 75 -6.6 -4.36914 | TTGCTTTTGACAAAA CCGGCACT CTC ACCGCCGG CGCTCCCAAAGTCGT PAE2758 1636096 - 1638465 + | cation-transporting ATPase (P-type) TERM 1481 1638676 - 1638688 + G 85 -6.9 -4.78107 | overlap 1638677 TGAAATTCGCCCGAC TGGCC TAC GGCCG TTTTTACTCCTCCTA PAE2759 1638507 - 1638869 + | hypothetical protein PAE2760 1638885 - 1639247 + | paREP11 PAE2762 1639815 - 1639309 - | hypothetical protein TERM 1482 1639384 - 1639374 - G 77 -8.2 -4.02817 | CCGCGACAATAATAA GGCC TAT GGCC ACTACTGCCAGCGCC TERM 1483 1639617 - 1639600 - G 100 -12.7 -4.4078 | opp_overlap 1639600 CCTCTCTAAGGAAAA GCCCAGG ATCG CCTGGGC TATTCCAAAAGCCAC TERM 1484 1639600 - 1639617 + g 79 -12.7 -3.01712 | opp_overlap 1639600 CCTCTCTAAGGAAAA GCCCAGG ATCG CCTGGGC TATTCCAAAAGCCAC PAE2766 1640019 - 1640171 + | hypothetical protein TERM 1485 1640211 - 1640223 + T 72 -6.3 -4.25848 | TTGCGCCATATGTCG CACTA ATG TAGTG TTTTACTCCAGCCTT PAE2767 1641494 - 1640226 - | transport protein, putative TERM 1486 1640836 - 1640858 + g 88 -5.4 -5.30189 | AAGGCCTCTGCTATT GGGAGTCTGG AAA CCCGACCCTC TTTTTTAATCTTCTC TERM 1487 1641633 - 1641621 - R 71 -7.7 -3.96068 | GCATGGCAATAAGAA GACCT AGG AGGTC GGGCAAGGCTTCCTC PAE2769 1642727 - 1641660 - | hypothetical protein TERM 1488 1643257 - 1643274 + H 78 -5.6 -4.85545 | AGGTTGAGAATGGTT GGCTAA CTGAAA TTAGCC TTTTCTTGGTTTAGT PAE2770 1643440 - 1643712 + | paREP12, degenerate PAE2773 1644632 - 1644153 - | hypothetical protein TERM 1489 1644943 - 1644972 + G 77 -8.5 -4.08945 | gap 1, opp_overlap 1644932 TAAACACGGCTCTGC GCCT-TGGCCGCGC CAC GCGGTGCCAGAGGC TTTTAAGGGGCTAAT TERM 1490 1645130 - 1645095 - g 90 -9.6 -4.56597 | gap 1, opp_overlap 1645096 1645106 1645108, overlap 1645096 GGCTTTTGGCAAAAA GGGGAGAGCCGCTGGTC ACT GACCTGTTGCTC-CCCC TCTACTTGGAAATTG TERM 1491 1645096 - 1645130 + G 75 -12 -2.91199 | opp_overlap 1645095 1645096, overlap 1645106 1645108 GCTTTTGGCAAAAAG GGGAGAGCCGCTGGTC ACT GACCTGTTGCTCCCCC TCTACTTGGAAATTG TERM 1492 1645130 - 1645096 - g 80 -12 -3.33744 | opp_overlap 1645096 1645106 1645108, overlap 1645095 GCTTTTGGCAAAAAG GGGAGAGCCGCTGGTC ACT GACCTGTTGCTCCCCC TCTACTTGGAAATTG TERM 1493 1645327 - 1645316 - g 86 -7.2 -5.02074 | opp_overlap 1645316 CCAGTGTTGAAAAAA GCCC TGGC GGGC TTCTGGGGGTTAACA PAE2775 1644770 - 1645606 + | hypothetical protein PAE2777 1645709 - 1646029 + | hypothetical protein PAE2778 1646026 - 1646895 + | type II secretion system protein, conjectural PAE2779 1646892 - 1647677 + | hypothetical protein TERM 1494 1648015 - 1647985 - g 73 -9 -3.6993 | overlap 1647983 TACGGAGTTAAAATA CGTCGAGATGTTCC TTG GGAAAATCTCAGCG GTGGGGACGTCATGA PAE2780 1647743 - 1648030 + | hypothetical protein PAE2782 1648564 - 1648097 - | hypothetical protein TERM 1495 1648214 - 1648226 + g 70 -4.7 -4.58283 | AGAGGCGCCTCTTGC CGACG TGT CGACG TTTTTCACAACATTA PAE2783 1648620 - 1649045 + | hypothetical protein PAE2784 1649015 - 1649386 + | hypothetical protein PAE2785 1650035 - 1649370 - | ABC transporter ATP-binding protein, putative PAE2786 1650118 - 1650768 + | paREP5ab, internal deletion and authentic frameshift PAE2788 1651511 - 1650864 - | hypothetical protein TERM 1496 1651399 - 1651430 + g 71 -2.3 -5.0133 | gap 1, overlap 1651400 TCTAAACCAGTGCAC TTAGGCGTTGCCGT AGGAG GCGGTAGC-CCTAG TTTTTTAAAGAAATC PAE2789 1651978 - 1651508 - | hypothetical protein PAE2791 1652468 - 1651980 - | hypothetical protein PAE2792 1652504 - 1653106 + | hypothetical protein PAE2794a 1653082 - 1653417 + | hypothetical protein PAE2794 1655014 - 1653368 - | protease IV, conjectural TERM 1497 1655690 - 1655717 + Gr 73 -10.6 -2.9914 | opp_overlap 1655690 1655709 GGCGCTGGGGATATA CGTCACCGCTTT AAAT AAAGCCGTGGCG TCTATATACGGCATA PAE2795 1654995 - 1655942 + | serine protease PAE2796 1656271 - 1655939 - | hypothetical protein PAE2797 1656531 - 1656268 - | hypothetical protein PAE2798 1656594 - 1657619 + | M20/M25/M40 family peptidase TERM 1498 1658423 - 1658433 + G 70 -6.8 -4.11484 | opp_overlap 1658423 TACCACCACCACAAA GTCG TGC CGAC TTTTACAAAATTCGC PAE2799 1657655 - 1658866 + | hypothetical protein PAE2800 1658863 - 1659147 + | hypothetical protein TERM 1499 1659514 - 1659503 - g 95 -7.2 -5.30199 | AAAAATTAAGAAAAA GGGC AGTT GCCC CCACGCCGTAGAAGA PAE2801 1659168 - 1659566 + | hypothetical protein PAE2804a 1659753 - 1659827 + | paREP8, degenerate TERM 1500 1660494 - 1660504 + G 78 -8.2 -4.25104 | overlap 1660486 TCCAGCTGGGGGCCA GGGG ACA CCCC TTTTACTCAAAGGCC PAE2806 1660082 - 1660699 + | hypothetical protein TERM 1501 1661120 - 1661100 - g 73 -9.1 -3.67634 | opp_overlap 1661099, overlap 1661098 CAGTATTTCAAAAGA CCCTCTATA GGG TATAGAGAG GGGTTAATAGGCGTG PAE2808 1660704 - 1661240 + | hypothetical protein PAE2809 1661402 - 1661268 - | hypothetical protein PAE2811 1662980 - 1661667 - | hypothetical protein TERM 1502 1662653 - 1662642 - G 81 -5.8 -4.87803 | CAGTGGTAAATAAAA GGTC TTGT GACC CTCAAACTCTACCTC PAE2812 1663623 - 1663162 - | paREP8 TERM 1503 1663359 - 1663370 + g 75 -7.2 -4.41548 | CCCTGTGGCTGTAGT GGGG CATT CCCC TTTTCTCGGCTATGG TERM 1504 1664262 - 1664247 - g 70 -4.7 -4.56775 | AGGCTTGGTGAAAAA GAGAC ATAGCG GTCTC GTCTCCCTGGCAAAC PAE2813 1664059 - 1664460 + | hypothetical protein PAE2814 1664925 - 1665470 + | paREP1 TERM 1505 1665684 - 1665700 + F 73 -10.9 -2.57294 | overlap 1665675 1665674 1665683 CGTGCCCGCCTGCGG CGCCTTT TTT AAAGGCG GTTGATCTCAATATT TERM 1506 1666090 - 1666101 + F 76 -4.4 -5.0133 | AGCTCTTTTGTTAAG GACA TCGA TGTC TTTTTTGCGAAGCTA PAE2819 1666365 - 1667375 + | pyridoxine biosynthesis protein PAE2820 1667372 - 1667986 + | glutamine amidotransferase subunit PdxT PAE2821 1668474 - 1667983 - | paREP1 TERM 1507 1668357 - 1668314 - G 88 -12.4 -3.66178 | opp_overlap 1668314, overlap 1668326 TCCCTCAACGCCAAA GCCGCCAACAAAGCCTTCCA AGCT TGATAGGCCTTGCCGGCCGC GTTTCTGTAAAGCCC PAE2822 1669132 - 1668506 - | hypothetical protein PAE2823 1669354 - 1669151 - | hypothetical protein PAE2824 1669773 - 1669444 - | hypothetical protein PAE2825 1669822 - 1670034 + | hypothetical protein PAE2826 1671130 - 1670018 - | polyferredoxin PAE2827 1672791 - 1671157 - | CoA transferase, putative TERM 1508 1671581 - 1671549 - G 100 -14.1 -3.65224 | overlap 1671556 ACCCTATGGCAATAA CCGGAAACCCCCCAG GGC CTGGGAGCTTGCCGG GGAGGAAAGCAGGGT TERM 1509 1672369 - 1672351 - G 77 -7.3 -4.58283 | CAAGTCGTTTAAAAA CCCGCCG TCTAG CCGCGGG TCAATAAACGTGCCC TERM 1510 1672426 - 1672378 - G 72 -6.7 -4.15044 | gap 2 CCGCGGGTCAATAAA CGTGCCCAAGCCGACGCGGCTGA ATATA CCAGGCGCGCCGAC-T-GCCACG CTACGCAACCACCTG TERM 1511 1672647 - 1672657 + g 77 -3.2 -5.07275 | TAAACAAGTGTTTAG GATG GCC CGTC TTTTTATATCTCTCA PAE2828 1672925 - 1673149 + | hypothetical protein PAE2829 1673133 - 1673546 + | hypothetical protein PAE2830 1674008 - 1673553 - | paREP8 fabG 1675057 - 1674320 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1512 1674494 - 1674507 + g 79 -2.3 -5.19879 | CCCCAGAAGCTTCAT TAGGC TGTC GCCCA TTTTTGTCTTTACAA PAE2833 1675500 - 1675069 - | hypothetical protein PAE2834 1676657 - 1675497 - | hypothetical protein PAE2836 1677553 - 1676729 - | molybdopterin oxidoreductase, membrane subunit TERM 1513 1676804 - 1676822 + g 74 -2.4 -5.06414 | gap 1 AATGGCCAACGCCCC GCCTAGC GCTACA GC-AGGC TTTTTGTTAACAGCG PAE2837 1678254 - 1677556 - | molybdopterin oxidoreductase, iron-sulfur binding subunit PAE2839 1679360 - 1678251 - | molybdopterin oxidoreductase, molybdopterin binding subunit part 2, authentic frameshift PAE2840 1681447 - 1679360 - | molybdopterin oxidoreductase, molybdopterin binding subunit part 1, authentic frameshift TERM 1514 1681277 - 1681259 - G 82 -13.2 -2.88861 | opp_overlap 1681269, overlap 1681261 TACTACGTTGATATA TATGGCGC ACT GCGCCATA CACATGCCGCATATT TERM 1515 1681275 - 1681261 - G 75 -11.4 -2.99471 | opp_overlap 1681269, overlap 1681259 CTACGTTGATATATA TGGCGC ACT GCGCCA TACACATGCCGCATA PAE2842 1681979 - 1681542 - | hypothetical protein TERM 1516 1681888 - 1681906 + g 91 -3 -5.51353 | overlap 1681890 ACTGCAGAGATCACC TCGGAAGG CCT CCTCCCTA TTTTTCTTATTTTTA TERM 1517 1681890 - 1681904 + g 70 -5.6 -4.32946 | overlap 1681888 TGCAGAGATCACCTC GGAAGG CCT CCTCCC TATTTTTCTTATTTT PAE2843 1682607 - 1682014 - | hypothetical protein PAE2844 1682845 - 1682588 - | hypothetical protein PAE2846 1683120 - 1683695 + | paREP5ab, internal deletion and authentic frameshift PAE2848 1683900 - 1683715 - | hypothetical protein PAE2847 1684031 - 1683915 - | hypothetical protein PAE2849 1684298 - 1684077 - | paREP6 PAE2851 1684807 - 1684277 - | hypothetical protein PAE2853 1685369 - 1684788 - | paREP6 PAE2855 1685597 - 1686577 + | hypothetical protein PAE2856 1686928 - 1686584 - | hypothetical protein PAE2857 1687315 - 1686977 - | hypothetical protein PAE2858 1687530 - 1687408 - | hypothetical protein TERM 1518 1687852 - 1687840 - H 79 -2.6 -5.27477 | overlap 1687842 ATCGCAACCAAAAAA GCGC ACATA ACGC CGTTAAGCATTATAT TERM 1519 1689912 - 1689890 - g 95 -11.3 -4.386 | gap 1, overlap 1689891 1689892 CAAGGCCGTACAAAA CTCCGCTGGG GACG CCCAGCGG-G AAGGTTGAGATATAC TERM 1520 1689912 - 1689891 - g 77 -11.5 -3.22678 | overlap 1689890 1689892 AAGGCCGTACAAAAC TCCGCTGGG GACG CCCAGCGGG AAGGTTGAGATATAC TERM 1521 1689911 - 1689892 - g 89 -15 -2.53125 | overlap 1689890 1689891 AGGCCGTACAAAACT CCGCTGGG GACG CCCAGCGG GAAGGTTGAGATATA TERM 1522 1690328 - 1690308 - g 74 -11.1 -3.19449 | overlap 1690299 1690297 TAAAGAGGGCATCAA CCCGCAGTG GTT CACCACGGG GAAAGTTGAGCCTGT PAE2859 1687942 - 1690392 + | molybdopterin oxidoreductase, molybdopterin binding subunit PAE2860 1690389 - 1690955 + | molybdopterin oxidoreductase, iron-sulfur binding subunit PAE2861 1690952 - 1691824 + | molybdopterin oxidoreductase, membrane subunit PAE2862 1691944 - 1692420 + | paREP1 TERM 1523 1692410 - 1692398 - T 74 -5.5 -4.59109 | overlap 1692400 TAGAGTTCGTAAAAA GACGC GTT ACGTC GGGAACGTAAAAAGT PAE2864 1692879 - 1692490 - | hypothetical protein PAE2865 1695072 - 1693117 - | acetyl-coenzyme A synthetase PAE2866a 1695548 - 1695105 - | hypothetical protein TERM 1524 1695507 - 1695492 - GR 72 -9 -3.53224 | opp_overlap 1695494 TACTTTTTTTCTAAA TGCGCT TTTT AGCGCA AGCGATTCGTTTATT PAE2866 1697175 - 1695487 - | sugar transporter, putative TERM 1525 1696474 - 1696458 - GR 74 -7.2 -4.25658 | ACGCCATTAAAACAA GCGGCA AGTAG CGCCGC GAAAAGACTTCTCTA PAE2867 1699184 - 1697172 - | acetyl-CoA synthetase TERM 1526 1697422 - 1697432 + g 74 -8.2 -3.90744 | overlap 1697418 CGCAACTCGTCGCTT GGCG CCA CGCC TTGTTTCAGCACCAC TERM 1527 1697706 - 1697730 + g 81 -7 -4.72272 | opp_overlap 1697687 1697705 1697706 GGGATCGCCCCAAAT GCCGTGGAGC ATGCC GGGCCACGGC TTTTTAATGACAAGA TERM 1528 1698318 - 1698287 - G 71 -10.8 -2.94747 | TCATTGTAGCATATA CGTGCACGGCCCAG CCGC CTGTGTCGTGCACA ATGCCCTTGGGCTTC TERM 1529 1698603 - 1698615 + g 72 -7.7 -3.91144 | opp_overlap 1698599 1698601 GGTTATGACAATACG CGACT GGG AGTCG TTTATACGCTCTGCC PAE2868 1700333 - 1699419 - | homoserine dehydrogenase TERM 1530 1699794 - 1699820 + g 74 -8.7 -3.91412 | overlap 1699796 CTCCTTGGCCTCTCT AACGGCGTCTT CAAAC GAGACGCCGTC TTTATAAACTCTCGT TERM 1531 1699796 - 1699818 + g 82 -11.3 -3.54447 | overlap 1699794 CCTTGGCCTCTCTAA CGGCGTCTT CAAAC GAGACGCCG TCTTTATAAACTCTC TERM 1532 1700549 - 1700501 - g 70 -6.9 -4.03234 | gap 3, opp_overlap 1700487 1700512 1700513, overlap 1700513 GGGCCTTCACAGAAA CGCGGCTG--GAAAG-GCCTTTCA GGGG TGGAAGGCCCTTTTGGCAGCCGCG GCGGCTAAAAACAGG TERM 1533 1700512 - 1700535 + G 74 -7.4 -4.07568 | opp_overlap 1700501 1700513, overlap 1700487 1700513 GAAACGCGGCTGGAA AGGCCTTTCA GGGG TGGAAGGCCC TTTTGGCAGCCGCGG TERM 1534 1700513 - 1700534 + G 72 -10.9 -3.04398 | opp_overlap 1700501 1700513, overlap 1700487 1700512 AAACGCGGCTGGAAA GGCCTTTCA GGGG TGGAAGGCC CTTTTGGCAGCCGCG PAE2869 1700382 - 1700873 + | paREP1 TERM 1535 1700876 - 1700899 + T 72 -10.2 -2.89659 | opp_overlap 1700867, overlap 1700875 GTTAAAGACTTGACA GTCCGGGCTC TGAA GAGCCCCGGC ATTGTTATGGGTCTG PAE2870 1701262 - 1700963 - | paREP11 TERM 1536 1701129 - 1701143 + g 74 -2.1 -5.14563 | gap 1, overlap 1701120 1701129 TCAACGCACCGGAGC GGG-GT TTCA ACTCCC TTTTTTAATACGGCG PAE2872 1701536 - 1701309 - | hypothetical protein PAE2874 1701848 - 1702129 + | hypothetical protein PAE2875 1702190 - 1702492 + | hypothetical protein PAE2876 1703552 - 1702533 - | aspartate-semialdehyde dehydrogenase PAE2877 1704560 - 1703565 - | aspartate kinase PAE2878 1705603 - 1704557 - | threonine synthase TERM 1537 1704740 - 1704688 - G 70 -10.4 -3.20164 | gap 1 CTATATTTAATTTAA TCGCCGCGGCTATTGACGCGGCGCC CGCG GGCTCCGCCCCTAT-GCCGTCGCGA GTTGCCAAGAGCCTC TERM 1538 1704940 - 1704895 - G 85 -7.3 -4.82901 | gap 1, overlap 1704931 1704932 GCTCGTCTACAAAAA GCGGCTCCTCCACGCCGCGGGC CCA GGCCTCGACA-AGCGGCGCCGC GCCCTCCGCCTGGAC PAE2879 1706071 - 1706451 + | hypothetical protein argC 1706448 - 1707503 + | N-acetyl-gamma-glutamyl-phosphate reductase PAE2882 1707500 - 1708285 + | acetylglutamate kinase PAE2883 1708356 - 1708541 + | hypothetical protein PAE2884 1708785 - 1709735 + | argininosuccinate synthase (argG) TERM 1539 1709835 - 1709823 - g 77 -3.3 -5.12707 | CCAAATTGCAAAAAA CCGGT GAA ACCCG TGGAGTGTAACAGAA PAE2886 1709784 - 1709939 + | hypothetical protein TERM 1540 1710443 - 1710454 + G 72 -4.4 -4.62302 | TTGGCCATAGACGAG CTCT TGGC AGAG TTTTTACACATATTA PAE2887 1709939 - 1711228 + | argininosuccinate lyase TERM 1541 1711445 - 1711433 - T 78 -6.3 -4.56597 | opp_overlap 1711439, overlap 1711439 CCCGTCGTCGAAAAA GAGAA TCA TTCTC AAATGTCTGTGTCCA PAE2889 1712027 - 1711482 - | hypothetical protein TERM 1542 1711731 - 1711772 + g 79 -12.1 -3.01712 | CGATATCCAGTGAGG GGCGCCGTAGTCCTCGGGG AAAA CCCCCACGCCCATGGCGCC TATTGACGCAAGCGC TERM 1543 1711885 - 1711868 - G 79 -4.1 -5.09762 | ACCCCAACAGAAAAA CGCTTGT GTTG AAAAGCG TAGAAGTGGGGGCGT TERM 1544 1712821 - 1712833 + G 72 -5.5 -4.56775 | opp_overlap 1712810, overlap 1712818 AAAGCCGCGCAACCG CTTCG TCG CGGAG TTTTTCGGCGAGGCT PAE2890 1712141 - 1713112 + | spermidine/putrescine transport ATP-binding protein TERM 1545 1713611 - 1713626 + G 74 -6 -4.50583 | overlap 1713612 TCCCGTTAACAATGC CCGGCG TAGT CGCCGC TTTTATCCTCATATT PAE2891 1713109 - 1713840 + | spermidine/putrescine transport permease protein TERM 1546 1714552 - 1714566 + G 100 -11.4 -4.65933 | TGCTCATTCCCTCTC TCGCCG CTG CGGCGA TTTATTTTAGAGCTG PAE2893 1713837 - 1714598 + | spermidine/putrescine transport permease protein PAE2895 1715928 - 1714849 - | hypothetical protein TERM 1547 1715467 - 1715482 + g 72 -6 -4.36914 | overlap 1715465 1715471 GGCTATTGGGCCCGC GGGGGG TCTT CCCGCC TTTTCTGCGGGCAGG PAE2897 1717175 - 1715925 - | hypothetical protein TERM 1548 1717153 - 1717109 - G 100 -17.9 -3.32844 | opp_overlap 1717108 1717106 1717109 GTTTGTATGTGACAA GCGCTATTACAGCCACGGCAA CAA CTGCCGCGGCTAGAATTGCGC CTATTATGACGTTTT TERM 1549 1717109 - 1717153 + g 76 -12.8 -2.55909 | opp_overlap 1717109, overlap 1717108 1717106 GTTTGTATGTGACAA GCGCTATTACAGCCACGGCA ACAAC TGCCGCGGCTAGAATTGCGC CTATTATGACGTTTT PAE2898 1717624 - 1717205 - | hypothetical protein TERM 1550 1717332 - 1717344 + g 79 -4.9 -4.95484 | overlap 1717333 ACTATGTGCCTCACT TGAAA TTG TTTCA TTTTCTTTGCTGCTA PAE2899 1718937 - 1717645 - | hypothetical protein PAE2901 1720043 - 1718937 - | hypothetical protein TERM 1551 1720544 - 1720530 - g 72 -5.6 -4.56775 | opp_overlap 1720530 AGGGCTTTGGAAAAA CACGGC GTG GACGTG TTATTAATGGACGGG PAE2902 1720197 - 1721468 + | hypothetical protein TERM 1552 1722921 - 1722898 - g 74 -7.4 -4.08216 | overlap 1722899 GGAGTTCTTGGAAAA CCTCCCAGGT CTAG ACGTGGGAGA GGCGATCATATTAGG TERM 1553 1723141 - 1723122 - g 70 -7.2 -4.11692 | gap 1, overlap 1723134 1723135 CAGCTAGGCTGAAAA TTCTGCGGA AAA TCCGC-GAA GGGGGAAGGGTGGGC PAE2903 1721465 - 1723291 + | hypothetical protein PAE2904 1723288 - 1724445 + | exonuclease sbcD, conjectural TERM 1554 1725916 - 1725939 + G 72 -7.4 -3.85817 | GGTGGAAGAGGTGAA GTCTTCGCTT GAGG AGGCGGAGGC TTTATACCAACAGCT PAE2905 1724438 - 1726546 + | purine NTPase, PAE2906 1727715 - 1726549 - | peptide chain release factor 1 rps10p 1727794 - 1728114 + | 30S ribosomal protein S10P TERM 1555 1728474 - 1728494 + G 83 -12.5 -3.31144 | overlap 1728484 1728488 CATCGGGCACTCTAG GCGCCGCCT TCC AAGCGGCGC TTCTGGGAATCCCCG TERM 1556 1728847 - 1728830 - g 70 -6.9 -4.07885 | opp_overlap 1728832, overlap 1728833 TATGTGGTGTTAAAA GAGGGCG GTAT CGCCATC ACCCCCCTGACTTTA PAE2908 1728146 - 1728946 + | surE stationary-phase survival protein PAE2910 1728943 - 1729767 + | hypothetical protein PAE2911 1730002 - 1729739 - | hypothetical protein PAE2913 1730681 - 1730031 - | hypothetical protein TERM 1557 1730712 - 1730696 - R 72 -5.1 -4.56597 | overlap 1730698 CGGGGTTGGGAAAAA CTGGTTA TAT TAACCCG AGCTCTTTTAAAATC PAE2915 1731605 - 1730700 - | dihydrodipicolinate synthase TERM 1558 1731315 - 1731326 + g 72 -5.8 -4.36903 | overlap 1731305 1731311 GATGAGTATGGCGTC GACG CCAA CGTC TTTATATTTCCTCGC PAE2916 1731685 - 1731846 + | hypothetical protein TERM 1559 1732258 - 1732234 - g 77 -7.1 -4.58395 | opp_overlap 1732233 1732234 TGGAGCTGTTAAAAA CTCTTGACGAC TAT GTCGATAAGAG CTTGTCAGTGAGGCG PAE2918 1731870 - 1733243 + | tldD, putative modulator of DNA gyrase TERM 1560 1733977 - 1733954 - g 72 -4.6 -4.64844 | opp_overlap 1733962, overlap 1733959 TCGAGATATACAAAA GACGACTT GGGGAGAG AAGTCGCC TCTCCCCTGTTAACA TERM 1561 1733962 - 1733984 + G 72 -10.6 -3.07947 | opp_overlap 1733954 1733959 TACAAAAGACGACTT GGGGAGAG AAGTCGC CTCTCCCC TGTTAACAGTTATTG PAE2919 1733240 - 1734523 + | pmbA, putative modulator of DNA gyrase PAE2921 1734881 - 1734657 - | paREP10 TERM 1562 1734857 - 1734841 - G 81 -4.3 -5.05782 | overlap 1734843 ATCCATTTTAAAAAA TCCTCCG TAG CGGCGAA CAACACCAACCACAC TERM 1563 1734991 - 1735004 + r 70 -9.5 -3.01712 | opp_overlap 1734967 1734964 CGCCGGGATTTGAAC CCGGG ACCG CCCGG TCTTCAGCCGGGCGC PAE2923 1736330 - 1735149 - | hypothetical protein TERM 1564 1735686 - 1735698 + g 71 -3.3 -4.7871 | TGCAACGGGTCCCTC CGCCA CCG TCGCG TTTTTCCTCGTGATT PAE2924 1736779 - 1736327 - | hypothetical protein TERM 1565 1737173 - 1737185 + G 70 -10.5 -2.75844 | overlap 1737172 1737173 1737176 TGTGGCTGCCGGCTT CGCCG CGG CGGCG CTTTCGCCTCACGCG TERM 1566 1737244 - 1737270 + G 71 -2.2 -4.88918 | overlap 1737227 1737226 1737245 CAGGCGTGGGCCTCG CCGCGGTGTT TGGTAGC AACAACGCGC TTTTGTTTCAAATCG TERM 1567 1737870 - 1737892 + G 100 -14.1 -3.92143 | overlap 1737887 ATCGTGGCTACTGCC GGCGCCGCC CTACT GGCGGCGTC TTTATACGCCTTTTC PAE2925 1736928 - 1738211 + | resistance protein, conjectural PAE2926 1738733 - 1738200 - | NADH-ubiquinone oxidoreductase subunit TERM 1568 1738544 - 1738560 + g 70 -4.3 -4.58283 | opp_overlap 1738544 CGCTTAGGGAGAGGA CGTGGTC AAA GCCCATG TTTTTAACAGCGTTG PAE2928 1739308 - 1738736 - | NADH-ubiquinone oxidoreductase subunit TERM 1569 1739005 - 1738991 - G 76 -9.2 -3.79906 | TGAGTTCCAGAACAA GCCGCC TCT GACGGC GCAGGCGCCCATGGC TERM 1570 1739197 - 1739169 - G 76 -12.4 -2.52464 | overlap 1739143 TCTGCGTCGAAGCCA GGCGCCGAGGTG TGGGC CACCTCCACGCC GCAACACGATGTGAC PAE2929 1740358 - 1739405 - | aldo-keto reductase, putative TERM 1571 1740579 - 1740620 + r 80 -7.1 -4.66537 | gap 1 TAGATGTATCCATAG GGGCTCCGACCCG-GCGC CACGCCC GCGCATGGGCCGGCGACC TTTTATCTTGCCCCG TERM 1572 1740785 - 1740763 - R 79 -12.8 -2.8934 | overlap 1740758 1740755 CTGGAAACGACGATA GTCCGGAAAA GAG TCTTCCGGAC AATTGAAGGAATACA PAE2931 1741877 - 1740816 - | alcohol dehydrogenase (Zinc) TERM 1573 1741781 - 1741801 + g 70 -5.3 -4.33928 | overlap 1741782 CTTTTATCAATATTT CCCCTTCTC CCG GAGTAGGGA TTTCTGTTTCGGCTA PAE2932 1742290 - 1741874 - | hypothetical protein PAE2934 1743343 - 1742585 - | hypothetical protein TERM 1574 1742966 - 1743012 + g 79 -4.7 -4.90778 | gap 2, overlap 1742968 1742969 1742970 CAGTATTTTGAGCCC GAGTCTTATAGACTTCTTGTCCA GCC TGG-CGAGGAGTTTATAAG-CTA TTTTCTTTAAGTCGA TERM 1575 1742969 - 1743010 + g 74 -7.5 -4.07285 | gap 1, overlap 1742968 1742966 1742970 TATTTTGAGCCCGAG TCTTATAGACTTCTTGTCCA GCC TGG-CGAGGAGTTTATAAGC TATTTTCTTTAAGTC TERM 1576 1742970 - 1743009 + g 72 -11 -3.03286 | gap 1, overlap 1742968 1742969 1742966 ATTTTGAGCCCGAGT CTTATAGACTTCTTGTCCA GCC TGG-CGAGGAGTTTATAAG CTATTTTCTTTAAGT TERM 1577 1743383 - 1743371 - H 71 -3.5 -4.82901 | TGCTGTGTATAAAAA TTTTT ATT AAAAA GTGTTAAAGACGCGT PAE2935 1743400 - 1743924 + | hypothetical protein TERM 1578 1744146 - 1744110 - g 74 -5.8 -4.53036 | gap 1, opp_overlap 1744111 1744128, overlap 1744111 1744114 GGATAAAGACGAAAA GCGAGCGTTTTAAGGCC GCGC GGCCTGAATACGC-CGT GTTTTTAAGAGGCGT TERM 1579 1744111 - 1744145 + G 78 -9.3 -3.90048 | gap 1, opp_overlap 1744111 1744110 1744114, overlap 1744128 GATAAAGACGAAAAG CGAGCGTTTTAAGGCC GCGC GGCCTGAATACGC-CG TGTTTTTAAGAGGCG TERM 1580 1744143 - 1744114 - g 70 -10.7 -2.80913 | opp_overlap 1744111 1744128, overlap 1744111 1744110 AAAGACGAAAAGCGA GCGTTTTAAGGCC GCGC GGCCTGAATACGC CGTGTTTTTAAGAGG TERM 1581 1744128 - 1744147 + G 72 -5.6 -4.57341 | opp_overlap 1744114 1744111 1744110, overlap 1744111 AGCGTTTTAAGGCCG CGCGGCCT GAAT ACGCCGTG TTTTTAAGAGGCGTT TERM 1582 1744286 - 1744274 - g 72 -10.5 -3.01712 | GCGGCGGTTGTAATA GGCCC CGT GGGCC TGGGGGAGGAGTTGC TERM 1583 1744436 - 1744423 - g 76 -3.7 -5.00884 | overlap 1744424 AGCGGTGTTAAAAAA CGCCG GGCA CGCCG CCTACTTGGACAGGC PAE2936 1743917 - 1744501 + | hypothetical protein PAE2937 1745380 - 1744484 - | dihydropteroate synthase TERM 1584 1745048 - 1745060 + g 72 -10.5 -3.03159 | opp_overlap 1745039 1745038 TATAATGGCGGCCCC CGCCC TTA GGGCG TATTCGGCCACTTGC TERM 1585 1745092 - 1745111 + g 77 -2.8 -5.08169 | gap 1, overlap 1745095 GCCTGTAGGTATCTA CGCTGACGG GCA CCTTCA-CG TTTTTTACAATCTCT TERM 1586 1745385 - 1745362 - G 70 -6.6 -4.08216 | overlap 1745363 GCACGCCCCCCAAAA GCGCCTTGAG TTTG CTCATGGCGT CGAGAAGGTTTTGCA PAE2938 1745467 - 1745769 + | hypothetical protein PAE2939 1745792 - 1747042 + | hypothetical protein PAE2940 1748863 - 1747151 - | methionyl-tRNA synthetase PAE2941 1749503 - 1748886 - | hypothetical protein PAE2942 1750219 - 1749503 - | hypothetical protein TERM 1587 1750080 - 1750096 + g 75 -5.1 -4.58685 | AACTCCAAAGCCCAC GTGAGAA AAT TCCTCAC TTTTTCCACCCCTTT PAE2942a 1750523 - 1750197 - | methionyl-tRNA synthetase beta subunit PAE2944 1750569 - 1751534 + | hypothetical protein PAE2945 1752067 - 1751675 - | hypothetical protein TERM 1588 1751946 - 1751970 + g 70 -4.1 -4.67692 | opp_overlap 1751932, overlap 1751946 1751948 ATAGGCCCGTCTGAG TGGACGTGGCG TAT CCCCACGCCGA TTTGTTTAATTTTGG PAE2946 1754499 - 1752073 - | hypothetical protein TERM 1589 1752755 - 1752736 - GH 72 -5.7 -4.46072 | gap 1 GTCAATAAATACAAA CGTGACGC TTTCC GCGTC-CG AGAAATTCGGGTCAA TERM 1590 1753285 - 1753300 + gH 70 -3.9 -4.67904 | opp_overlap 1753284, overlap 1753284 1753283 TATTACGTATACAAC CGTCG AGACGG CGGCG TTTTTAAAATTCCTA TERM 1591 1753346 - 1753361 + gH 71 -6.8 -4.13728 | overlap 1753348 ACAACGGTAATGTTG TGGGCC CCCG GGCCTA TTTTAAGCGTGTCTA PAE2947 1754465 - 1755217 + | hypothetical protein PAE2948 1755968 - 1755204 - | hypothetical protein TERM 1592 1755735 - 1755723 - G 70 -4.7 -4.52589 | overlap 1755724 CCTCCTGATATAAAA GGCCC GCA GGGGC TCCGCCAGTCTCCCA TERM 1593 1755977 - 1755991 + r 79 -4.2 -5.23316 | TCTTCATACTTCAGG CGCC GTAACTG GGCG TTTTTTAATCTCGTC PAE2949 1756171 - 1755965 - | hypothetical protein PAE2950 1756526 - 1756212 - | hypothetical protein PAE2951 1756574 - 1757710 + | hypothetical protein PAE2954 1758011 - 1758814 + | solute-binding family 3 protein PAE2955 1758799 - 1759206 + | hypothetical protein TERM 1594 1759330 - 1759318 - f 74 -10.5 -3.14564 | TCATCGGCCCAGGAA GGCGG CGG CCGCC CACGGAAAGCGTCCT TERM 1595 1760278 - 1760294 + GF 76 -3.7 -4.94902 | overlap 1760279 TTTACATCCTCCTGA GCCTAAT CAC ATTAGGG TTTTTATACTACTTC PAE2958 1759755 - 1760363 + | hypothetical protein TERM 1596 1760849 - 1760862 + GT 70 -4.5 -4.46212 | CCGCTTCCGCAAGAT GCCTT GAGA GAGGC TTTTATGCTGGCGGA PAE2959 1760324 - 1761088 + | NAD-dependent deacetylase PAE2960 1761590 - 1761069 - | hypothetical protein PAE2961 1762006 - 1761587 - | hypothetical protein TERM 1597 1761716 - 1761734 + g 72 -4.5 -4.67942 | CCTCATTTTATCCAT CGCCTCA ATCAC TAAGGCG TTTTCGTTTATTACC TERM 1598 1761974 - 1761989 + g 86 -6.8 -5.00616 | TATATCTGAAACCCT GAGGGG TAGC TCCCTC TTTTTTACAAGCGGC PAE2964 1762358 - 1762029 - | hypothetical protein PAE2965 1762780 - 1762355 - | hypothetical protein PAE2966 1762914 - 1762777 - | hypothetical protein PAE2967 1763123 - 1762911 - | hypothetical protein PAE2968 1763197 - 1763883 + | sugar-phosphate nucleotidyl transferase, putative TERM 1599 1763942 - 1763926 - g 71 -9.3 -3.42684 | opp_overlap 1763941, overlap 1763914 1763924 AAACGCAGTGAAATA CGGCGGC AAA GCCGACG TCAAGGCCGTTATGG TERM 1600 1764530 - 1764520 - g 74 -2.4 -5.06735 | overlap 1764522 TAGAAATGAGAAAAA GGCG TGT CCCC ACAGAGAGCAACCGC gltX 1763873 - 1765585 + | glutamyl-tRNA synthetase PAE2970 1765578 - 1766570 + | hypothetical protein PAE2971 1766599 - 1766988 + | hypothetical protein PAE2972 1767538 - 1766954 - | hypothetical protein TERM 1601 1767014 - 1766999 - G 81 -6.8 -4.72486 | GATAAATTCTAAAAA CCCCGA CTCC TCGGAG TACCCCAGCCAGTCC PAE2973 1768811 - 1767516 - | asparaginyl-tRNA synthetase PAE2975 1769063 - 1768815 - | hypothetical protein PAE2977 1769872 - 1769060 - | 3-hydroxyisobutyrate dehydrogenase, putative TERM 1602 1770370 - 1770356 - g 82 -9.2 -4.16842 | CCCAGTGCGAATAAA GCCGGG AGG CCCAGC CCCACTACGGCGACA PAE2978 1769921 - 1770952 + | sua5 family protein PAE2979 1770949 - 1771728 + | methyltransferase TERM 1603 1772179 - 1772163 - g 72 -4.3 -4.72272 | CCTTGTTATTAAAAA CCTCTAC CCA GCTGAGG AGTTCGCAAAAGCTC PAE2980 1771753 - 1772607 + | ribose-phosphate pyrophosphokinase PAE2981 1773612 - 1772602 - | acetylpolyamine aminohydrolase, putative TERM 1604 1772999 - 1772973 - G 74 -7.9 -4.04206 | CTACTTTTATATAAA CGTCGTCGCCA ACCTG CGGCGGCAACG GGATGTTTATATTGT PAE2982 1773672 - 1773863 + | hypothetical protein PAE2983 1774470 - 1773841 - | hypothetical protein TERM 1605 1774361 - 1774338 - G 74 -2.5 -5.03314 | opp_overlap 1774338 TGCACGTGTAAAAAA TAGGCGGC-AG TACC CTCGCC-CCTA TCCTCTCAGCTGTTT TERM 1606 1774980 - 1774943 - g 84 -3.5 -5.1963 | opp_overlap 1774949, overlap 1774944 1774945 CGCAACTAATAAAAA CGGTCCGCTGTAT GTCTACCGCTTA ATACAGCGGACAA TAAGCACTATAGACA PAE2984 1774557 - 1775222 + | hypothetical protein TERM 1607 1775293 - 1775280 - g 70 -5.2 -4.30809 | opp_overlap 1775280 GAATAGCGAGTAAAA GCGG CTACTC CCGC CTTTCTTGTCCACAC PAE2985 1775219 - 1775902 + | hypothetical protein PAE2986 1775910 - 1776551 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase PAE2987 1776948 - 1776535 - | hypothetical protein PAE2989 1777001 - 1778077 + | hypothetical protein PAE2990 1779232 - 1778072 - | nicotinate phosphoribosyltransferase TERM 1608 1779127 - 1779145 + g 74 -3 -5.0133 | opp_overlap 1779114 ACTCGGCGCGGACGC GCACGTCT CCA AGACCCGC TTTTTTCAACACCTC TERM 1609 1779947 - 1779963 + G 74 -7.9 -4.04319 | opp_overlap 1779944 CTTTGTAGAGGAGGC GGCGGGA GTT TACCGCC TTTATACATTTGTAA TERM 1610 1780468 - 1780479 + G 70 -7.2 -4.14472 | TATGTATTAACGCGT CGCC GAGG GGCG TTTTGGCCGTATTCC PAE2991 1779264 - 1781006 + | hypothetical protein PAE2992 1781451 - 1780978 - | hypothetical protein TERM 1611 1781719 - 1781735 + G 74 -7.9 -4.07568 | GAACGTCTGGACTTG GCTCCCC CCT GAGGAGC TTTTCAACGCAACGC TERM 1612 1782081 - 1782059 - g 77 -12.1 -2.78384 | opp_overlap 1782059 GCCGTTTTTACCAGA TTCCTCACC TTAAC GGTGAGGAA TTCGCTTAATAAAGG TERM 1613 1782059 - 1782081 + G 81 -12.1 -3.20723 | opp_overlap 1782059 GCCGTTTTTACCAGA TTCCTCACC TTAAC GGTGAGGAA TTCGCTTAATAAAGG TERM 1614 1782583 - 1782571 - g 76 -7.7 -4.258 | overlap 1782567 GGAGCTATTAAGAAA GGGTT TCA AACCC ACACGCGGCGACTCA TERM 1615 1783203 - 1783187 - g 73 -9.3 -3.61536 | overlap 1783189 AACTCAATTGTTAAA GACGGCG TAT CGCCGGC TAAACTAATCGCGGA TERM 1616 1783201 - 1783189 - g 76 -10.5 -3.38314 | overlap 1783187 CTCAATTGTTAAAGA CGGCG TAT CGCCG GCTAAACTAATCGCG PAE2993 1781522 - 1783330 + | DNA topoisomerase (topA) TERM 1617 1783452 - 1783419 - g 77 -10.3 -3.61232 | gap 1, opp_overlap 1783430, overlap 1783417 CTTGCGATAGAAATA GCCAGCAAGACA-GGC GCC GCCGTATCTGGCCGGC CGGTGTGGGGCAGTT PAE2994 1783323 - 1784234 + | hypothetical protein TERM 1618 1784333 - 1784322 - g 77 -7.2 -4.46926 | GACGTGAGTATAAAA CCCG TGGG CGGG CTTCACGAGGTGTTT PAE2996 1784241 - 1784561 + | hypothetical protein PAE2998 1784601 - 1786166 + | hypothetical protein PAE3000 1787510 - 1786176 - | elongation factor 1-alpha TERM 1619 1786996 - 1787017 + g 72 -4.3 -4.63218 | TGCTCGTATCTCTTC TGGTCGTAG TTCA CGACGTCCA TTTTATTAACAGCCA TERM 1620 1787159 - 1787142 - G 74 -7.7 -4.13654 | gap 1 TGCGGAAATGACAAA CAGCGCCG CAT CGGC-CTG GCTGGCGCCTACTAT PAE3001 1788231 - 1787626 - | isochorismatase, putative TERM 1621 1788393 - 1788373 - H 73 -7.5 -4.05033 | opp_overlap 1788376, overlap 1788376 TCTACGCTACAGAAA CACGCCG TAGGCCC CGGCGCG GCCGCCTTACAGCTC PAE3002 1788559 - 1788708 + | paREP2a TERM 1622 1788978 - 1788963 - g 70 -5.4 -4.31164 | gap 1 GTTAGAGAATATAAA GGCCGTC TTA GA-GGCC GCGGGCTATACCTTA PAE3003 1788787 - 1789167 + | hypothetical protein TERM 1623 1789203 - 1789214 + G 83 -5.8 -4.99861 | opp_overlap 1789201 1789202 CGGTGACGACGAACC GGGT GCCG ACCC TTTTTATAATTGGTG PAE3004 1789190 - 1789504 + | hypothetical protein TERM 1624 1789847 - 1789882 + G 75 -11.8 -3.02371 | opp_overlap 1789881, overlap 1789845 GGCCGCCGCCCAAGC CCTCCTTAGTCCTGGG AGCG CCCAGGGGAGAGGAGG TGGTTATTTGCGGCA PAE3005 1789543 - 1790109 + | hypothetical protein PAE3006 1790412 - 1790290 - | paREP2a PAE3007 1790802 - 1790419 - | paREP2a TERM 1625 1791138 - 1791120 - g 86 -11 -3.92324 | overlap 1791104 1791103 GGCCTCAATACTAAA CGCATTGG GCG CCAACGCG GAGGCGAAGGAGTAT PAE3008 1790812 - 1792032 + | paREP2b PAE3009 1792431 - 1793069 + | hypothetical protein PAE3010 1793585 - 1793082 - | hypothetical protein PAE3011 1794826 - 1793711 - | hypothetical protein PAE3014 1795427 - 1795152 - | hypothetical protein TERM 1626 1795216 - 1795232 + gr 83 -9.3 -4.21098 | opp_overlap 1795203, overlap 1795229 AGCTCGGCTAGCCTC GCCGCGG CCT CCGCGCC TTTTGGCGTTAGTCT PAE3015 1796115 - 1795399 - | hypothetical protein TERM 1627 1795469 - 1795453 - GR 80 -10.1 -3.85698 | TGCCCTTTTTACAAA CTCGGCG TAG CGCCAAG TGAGCTTCCACGCGG TERM 1628 1795872 - 1795836 - GR 77 -5.8 -4.59919 | overlap 1795861 1795865 1795866 AAATTACAAAAACAA GCGCCGCATATGATAT TACAT ATAACACAGGCGCCGC GACGCACAACCTTCT TERM 1629 1796088 - 1796076 - GR 85 -6.9 -4.79451 | opp_overlap 1796076 ATGTCAAATATAAAA GAGGC GAA GCCCC TTTACAAAGCCGGAA PAE3016 1796508 - 1796296 - | hypothetical protein PAE3017 1797017 - 1796589 - | hypothetical protein PAE3020 1797614 - 1797426 - | hypothetical protein TERM 1630 1797690 - 1797700 + H 79 -2.6 -5.38497 | ACACTCCCAAGAACT TTAT AAC ATAA TTTTTTAATTTCCAT PAE3023 1798431 - 1799183 + | carbon nitrogen hydrolase, conjectural TERM 1631 1799472 - 1799513 + T 88 -3.5 -5.63374 | gap 1 CAAATCTTAATCCCA GCCGGAG-CCTGGCAGGAGC ACT GTGCCTGCCCTCACTCTGGC TTTTTTTGGTATTAA PAE3024 1800554 - 1799463 - | sugar-phosphate nucleotidyl transferase PAE3025 1802364 - 1800556 - | D-fructose-6-phosphate amidotransferase TERM 1632 1800679 - 1800712 + g 77 -5.9 -4.63527 | gap 1, overlap 1800668 TGGCGCGAATAATTC GCTGGTCTGAGGCACT TCT ATTGCCAC-GTCCAGC TTTTTCGCGTAGTCG TERM 1633 1802070 - 1802053 - G 73 -11.3 -2.77344 | opp_overlap 1802034, overlap 1802052 1802067 1802068 GTACTTCTCAATAAT GCCGTTG TGCA CAACGGC GATTACGCCTCTACA PAE3027 1803375 - 1802425 - | hypothetical protein PAE3028 1803491 - 1804024 + | hypothetical protein TERM 1634 1804677 - 1804689 + G 71 -2.6 -4.89521 | opp_overlap 1804668, overlap 1804668 1804675 TATGAACGCCCTAGC CGTC TTCTC GGCG TTTTATTTGGGGTAT TERM 1635 1805945 - 1805974 + G 72 -7.1 -4.18197 | overlap 1805947 1805948 AAATAGGACTCGGCA TGATGGCGCCG CCGGAAAT CGGCGCCAGTA TTTTCACTAAACAGT TERM 1636 1805948 - 1805971 + G 70 -11 -2.81208 | overlap 1805947 1805945 TAGGACTCGGCATGA TGGCGCCG CCGGAAAT CGGCGCCA GTATTTTCACTAAAC TERM 1637 1806079 - 1806095 + G 70 -6.5 -4.18934 | GTATTAGTGCACGAT TATCCCC CTG GGGGAGA TTTCTTAAAGTCCTA PAE3030 1804297 - 1806654 + | oligosaccharyl transferase STT3-like protein PAE3031 1806862 - 1806644 - | H/ACA RNA-protein complex component Nop10p PAE3032 1807656 - 1806859 - | translation initiation factor IF-2 subunit alpha rps27e 1807900 - 1807697 - | 30S ribosomal protein S27e rpl44e 1808177 - 1807902 - | 50S ribosomal protein L44e PAE3035 1808691 - 1808209 - | hypothetical protein PAE3036 1809622 - 1808684 - | DNA primase related protein PAE3038 1810368 - 1809619 - | proliferating-cell nuclear antigen homolog (PCNA) TERM 1638 1809859 - 1809890 + g 76 -12.4 -2.56046 | gap 1, overlap 1809858 CACCTCTCCCTTGTC GCTAG-AGGCGCTTA TTA TAAGCGCCTCCTCGC TGGCTTCAAATTTAA PAE3040 1810803 - 1810471 - | putative DNA-directed RNA polymerase subunit M PAE3043 1810905 - 1811381 + | 30S ribosomal protein S19e PAE3044 1811381 - 1811713 + | hypothetical protein PAE3044a 1811751 - 1811807 + | ribosomal protein L39E, frameshift PAE3045 1812617 - 1811898 - | geranylgeranylglyceryl phosphate synthase-like protein TERM 1639 1811988 - 1812016 + g 93 -8.2 -4.87665 | gap 1, overlap 1811987 CACATTGGGCCTCTC GCG-GGCAATAGC CCTG GCTATTTCCCCGC TTTTTATCCCTCCGC PAE3047 1812909 - 1812604 - | hypothetical protein PAE3048 1813039 - 1814274 + | molybdenum cofactor biosynthesis protein (moaA) PAE3049 1814916 - 1814254 - | phosphoribosyl transferase PAE3051 1815947 - 1814958 - | hypothetical protein PAE3053 1816427 - 1816041 - | hypothetical protein PAE3055 1817163 - 1816411 - | extragenic suppressor protein suhB-like protein TERM 1640 1817271 - 1817282 + r 74 -3.6 -5.02074 | AACGGTTTGTAATAG CGTC TGTA GGCG TTTTTTAAGCCCTGA PAE3057 1818312 - 1817287 - | hypothetical protein TERM 1641 1817816 - 1817801 - G 85 -6.8 -4.85894 | gap 1, opp_overlap 1817813, overlap 1817803 AAATCAAATATAAAA CGCTCGC TCG GCG-GCG CGAAACGCGACTTAA PAE3058 1818691 - 1818452 - | hypothetical protein TERM 1642 1818872 - 1818852 - R 71 -7.5 -3.84346 | overlap 1818850 ATATTTAAACAAATA GACGCCG ATTTTCG CGGCGCC ACACATGCCCTGTTG TERM 1643 1819459 - 1819489 + r 75 -11 -3.03243 | ATGTAGCTCTCCGGG GCCCGTAGCTCAGC CTG GTAGAGCGGCGGGC TCTTAACCCGTAGGT PAE3060 1820362 - 1819970 - | hypothetical protein TERM 1644 1820419 - 1820402 - g 81 -6.2 -4.83269 | ACATGATAGTAAAAA CCACGC TTACTG GCGCGG GCGCCTCCACTCCGG TERM 1645 1820565 - 1820554 - g 70 -3.6 -4.63486 | AGTGTTGTAATAAAA GCCA CCAG CGGC TCTGTTACTAAACAT PAE3062 1820389 - 1820607 + | hypothetical protein PAE3063 1820978 - 1822618 + | hypothetical protein PAE3064 1823351 - 1822587 - | ABC-2 type transport system, membrane protein TERM 1646 1823037 - 1823062 + g 76 -9 -3.71255 | opp_overlap 1823040, overlap 1823040 TACCGCCGGCAGAGC CAACGCCGCT GAGACA AGCGACGTTG TTATTAAATACTTAT TERM 1647 1823226 - 1823203 - G 85 -6.6 -4.73682 | gap 1 CCCCAGAAGATAAAA CGG-GCGGCCA CAG CGGCCTCGCCG CCATACCAGGCAATT PAE3065 1824105 - 1823344 - | ABC-2 type transport system, membrane protein PAE3066 1825009 - 1824077 - | ABC-2 type transport system ATP-binding protein TERM 1648 1824839 - 1824829 - GH 79 -4 -5.08169 | AGAGAGTGGAAAAAA TCTT CAC AAGA GTAGTCTTCCCAGCG TERM 1649 1825111 - 1825099 - H 70 -4.7 -4.49364 | overlap 1825100 AAATTTAATAACAAA CCGGC AAT GCCGT GGACCACATATGGGT TERM 1650 1825550 - 1825560 + H 78 -5.4 -4.79667 | AGTGACGTATCACGC GCTT TTT AAGC TTTTTCATCCCTTTT PAE3068 1825713 - 1826315 + | phosphoglycolate phosphatase (pgp), conjectural TERM 1651 1826754 - 1826768 + T 80 -7.1 -4.72846 | ATGGCCTCTAAATGG CCAGC GTACA GCTGG TTTTTCCCTCTCTCA TERM 1652 1826827 - 1826811 - T 89 -10.9 -4.08216 | TTAGCCTCTCCAAAA CGGACTT GAC AAGTCCG AGCACTGCGACAACA TERM 1653 1826853 - 1826841 - T 70 -9.1 -3.31792 | CGAGCACTGCGACAA CAGCC TTG GGCTG GAAGTAAGCCGCAGA PAE3072 1827133 - 1826870 - | paREP2b PAE3075 1827465 - 1827370 - | paREP2b PAE3076 1827570 - 1828589 + | hypothetical protein TERM 1654 1828726 - 1828695 - f 79 -9.4 -4.09864 | gap 1 ACCTACGGGTTAAAA GCCCGCCGCTCTAAC CGG GCT-GAGCTACGGGC CCTGATTCAATATAC TERM 1655 1828906 - 1828916 + G 72 -6.8 -4.19238 | overlap 1828903 ATTTGGGAGAATGTG GAGC GCC GCTC TTTTGGCGTTGGCGG PAE3077 1828771 - 1828959 + | hypothetical protein PAE3079 1829890 - 1829177 - | hypothetical protein PAE3080 1829929 - 1830282 + | hypothetical protein TERM 1656 1830364 - 1830333 - g 77 -2.8 -5.16841 | overlap 1830345 CGAGAGGAAGAAAAA CGTTGAGGAAACTC TTCG GAGGCTCCCCGTCG ACTTCACAGAGGAGG PAE3081 1830313 - 1830513 + | hypothetical protein PAE3083 1831409 - 1830510 - | asparaginase TERM 1657 1831326 - 1831338 + g 77 -6.2 -4.63527 | opp_overlap 1831310 GCCCTCGCTAATGGC GGCG GCCAG CGCC TTTTTGACCTCCTGC rps4p 1831885 - 1831406 - | 30S ribosomal protein S4 TERM 1658 1831486 - 1831454 - G 86 -11.2 -3.96148 | gap 1, opp_overlap 1831479 1831481 1831483 TCGGGGCACTAGAAA GCCG-GGCGAGGTGA CCCT CCTCCCCGCCACGGC CACGTGGCCGTGTAC TERM 1659 1831481 - 1831498 + g 77 -12.7 -2.76171 | opp_overlap 1831454, overlap 1831479 1831483 GACCCTCCTCCCCGC CACGGCC ACGT GGCCGTG TACTATTAACTGCCT rps13p 1832375 - 1831917 - | 30S ribosomal protein S13P PAE3086 1833819 - 1832404 - | oligopeptide ABC transporter, permease protein TERM 1660 1832517 - 1832491 - G 75 -5 -4.86773 | overlap 1832495 TAAAACTATTAAAAA GCCAGGTGGCAA AAT CCACCACCAAGC GAAGTTTTTCAATGC PAE3087 1834886 - 1833816 - | oligopeptide ABC transporter, permease protein TERM 1661 1834104 - 1834119 + g 73 -9 -3.57883 | overlap 1834116 ATTCTCTGGGAGGCC CTTCGC TCTG GCGAAG TTTACAAAATCTTCT TERM 1662 1834264 - 1834245 - G 85 -11.4 -3.57915 | overlap 1834243 CACATCAAGGAAATA CGCCAGAG GCTC CTCCGGCG GCGGTGTAGATACCA TERM 1663 1834794 - 1834784 - G 74 -8.2 -3.86524 | ACATCTTGTCAGAAA GGCC CGT GGCC CCCATGATAAAAGCC PAE3088 1837530 - 1834936 - | oligopeptide binding protein, putative TERM 1664 1837532 - 1837552 + r 71 -3.3 -4.88222 | opp_overlap 1837533, overlap 1837533 GTTTTTGCCTTCATA AGTGTTAAA TGA TTTAACGCC TTTTTAAATTTTCCT PAE3090 1838930 - 1837776 - | pullulanase TERM 1665 1839099 - 1839109 + r 74 -5.4 -4.58685 | GGAGCTATATCTCCC GCTT TTT AAGC TTTTTCCCACAGTTT PAE3091 1840672 - 1839545 - | tryptophanyl-tRNA synthetase TERM 1666 1840079 - 1840028 - G 77 -11.5 -3.16564 | opp_overlap 1840030 1840031, overlap 1840030 GGCGCACGGTATTAA CACCGGAGTGGCCTCCCGCCTCA ACTCCG TGGGGAGGAAGGCCACTGCGATT TGTAGCGATGGGTAG TERM 1667 1840030 - 1840077 + g 90 -11.9 -3.87994 | opp_overlap 1840028 1840030, overlap 1840031 CGCACGGTATTAACA CCGGAGTGGCCTCCCGCCTCA ACTCCG TGGGGAGGAAGGCCACTGCGA TTTGTAGCGATGGGT TERM 1668 1840077 - 1840030 - G 89 -14.1 -3.14602 | opp_overlap 1840030 1840031, overlap 1840028 CGCACGGTATTAACA CCGGAGTGGCCTCCCGCCTCA ACTCCG TGGGGAGGAAGGCCACTGCGA TTTGTAGCGATGGGT TERM 1669 1840031 - 1840076 + g 95 -15.4 -2.92475 | opp_overlap 1840030 1840028, overlap 1840030 GCACGGTATTAACAC CGGAGTGGCCTCCCGCCTCA ACTCCG TGGGGAGGAAGGCCACTGCG ATTTGTAGCGATGGG TERM 1670 1840536 - 1840517 - G 71 -3.4 -4.83169 | overlap 1840518 ATGCGCGTAGAAAAA GCCCCTTC TGAT GAGGGGGT GCACCTCGCCTGCGT TERM 1671 1840667 - 1840690 + g 76 -3.7 -4.92239 | overlap 1840669 1840672 GACTACAAACTCCTC CTCCACCCC ATTGCG GGGGTCGTG TTTTTGAGTTTTTAA PAE3092 1841369 - 1840707 - | DNA-(apurinic or apyrimidinic site) lyase, conjectural TERM 1672 1840861 - 1840873 + g 76 -10.5 -3.28712 | opp_overlap 1840852 CAGTAATTGGCGTTT GGGGG CGC CCCCC TTATGCCAAGCCCCG TERM 1673 1841214 - 1841198 - G 79 -4.3 -4.91511 | AGGCGACGACAAAAA TGAGGTC TTC GTCCCCA GGGGAGATGGAGATG TERM 1674 1841483 - 1841456 - R 77 -11.2 -3.24925 | overlap 1841457 AGTTCATATCATGAA GGCGGGGACTCC GCTG GGAGTCACCGCG CGGGTCGGCTTCAGC TERM 1675 1841482 - 1841457 - R 86 -14.7 -2.54634 | overlap 1841456 GTTCATATCATGAAG GCGGGGACTCC GCTG GGAGTCACCGC GCGGGTCGGCTTCAG PAE3093 1842208 - 1841444 - | molybdenum cofactor biosynthesis protein (moaA) PAE3095 1842418 - 1842693 + | ribosomal protein L31 TERM 1676 1843060 - 1843023 - g 70 -5.5 -4.41348 | overlap 1843024 CTGGCTGGAAACAAA GTGGCGCTGGTGTCT CCGCTTTT AGAGCCCAGCGCCAG GAAAGTAGTGGCAGA TERM 1677 1843317 - 1843289 - g 90 -13.1 -3.50853 | opp_overlap 1843267 TGTGGTGAACGACAA CGGCGCTCTCGTC GGC GACGAGACGGCCG GCCCCGAGCTAATGA PAE3097 1842693 - 1843355 + | translation initiation factor IF-6 PAE3098 1843412 - 1843648 + | ribosomal protein LX PAE3099 1843650 - 1844048 + | prefoldin subunit alpha TERM 1678 1844428 - 1844440 + G 73 -9.1 -3.59979 | opp_overlap 1844421 1844419 AAAGACGACGACTTT GGCGA AAC TCGCC TTTAACCTCCAGGAG TERM 1679 1844724 - 1844703 - g 70 -4.5 -4.48449 | gap 1, opp_overlap 1844703 TGAGGAAAATACAAA GAGTAAC-CG AAC CGCATTACTC TATCTTTGTATTTGA PAE3100 1844048 - 1844965 + | signal recognition particle protein PAE3102 1844995 - 1845294 + | hypothetical protein nusG 1845296 - 1845757 + | transcription antitermination protein NusG PAE3104 1845793 - 1846296 + | ribosomal protein L11 TERM 1680 1846328 - 1846318 - g 85 -6.8 -4.73297 | TAATTAACAAAGAAA CGCT CCA AGCG AAAATAGCGGAGGCG TERM 1681 1846815 - 1846797 - g 70 -10.3 -3.25192 | overlap 1846795 GTGAAGGTTAGAATA GGCTCTG AGGGG CAGAGCC CGAAGGAAATTTTAG TERM 1682 1846925 - 1846915 - g 70 -6.8 -4.08349 | ATTTTAAAAAGACAA TGGG GCC CCCA GTTAAGGTTCGGGCT rpl1P 1846293 - 1846961 + | 50S ribosomal protein L1P TERM 1683 1847957 - 1847938 - g 95 -11.4 -4.30719 | overlap 1847950 CCGCGCCACAACAAA CGCCCCAG CCAA CTGAGGCG CCAAAAGAGGAGGCC rplP0 1847001 - 1848038 + | acidic ribosomal protein P0 PAE3108 1848054 - 1848998 + | mevalonate kinase TERM 1684 1849011 - 1849022 + G 76 -3.6 -4.93296 | TGACAGAGCTCATAG GCCT TTTG GGGC TTTTTCTAATCGTGG PAE3109 1848995 - 1849228 + | hypothetical protein TERM 1685 1849698 - 1849680 - gf 71 -10.2 -2.71791 | overlap 1849666 1849679 ACGCCCTTGTGAAAG CCGCCGAG TCT CTCGGCGT TAGACACCACGTCGG PAE3111 1849244 - 1850029 + | uridine phosphorylase TERM 1686 1850062 - 1850046 - gf 72 -5.7 -4.46212 | opp_overlap 1850061, overlap 1850048 GTGGCCATTATAAAA CTGGGGC TGG ACCCCTG CGCTGACGTATTTAC PAE3112 1850001 - 1850237 + | hypothetical protein TERM 1687 1850256 - 1850240 - f 80 -6.5 -4.79451 | opp_overlap 1850240 1850239 AGCTCAAATATAAAA GTGGGGA TTA TCGCCAC GTTATGGAGCTGATC PAE3113 1850260 - 1850688 + | hypothetical protein PAE3114 1852232 - 1850685 - | nicotinate-nucleotide pyrophosphorylase and protein TERM 1688 1851852 - 1851832 - G 77 -6.1 -4.70772 | ATATACCTAAGAAAA GGCAACG TCTTCCT CGTCGCC GCCACTATTACCCGC PAE3115 1853152 - 1852229 - | quinolinate synthetase TERM 1689 1852511 - 1852524 + g 74 -8.1 -4.12198 | TGTGGAGAGGAATTT TGGGG AGAG CCCCA TTTTGGGCAGTTCTA TERM 1690 1852918 - 1852896 - G 74 -11.2 -3.15999 | overlap 1852876 GCCGCAGAGACGGAA GACGCCAGGC TAC ACCCGGCGCC GGGGTCTGGGATTAA TERM 1691 1852974 - 1852957 - G 77 -8.4 -4.07885 | TATCCGGGTTTAAAA TGGCGG CTGTCT CCGCCA TGAAATACACGCCGG TERM 1692 1853096 - 1853111 + g 76 -4 -4.91459 | gap 1 CAGTTGATAATTGTG CGCGAGT ATT ACT-GCG TTTTTCTCCCTCTTC PAE3116 1854137 - 1853256 - | hypothetical protein PAE3117 1854493 - 1854146 - | small heat shock protein, hsp20 homolog, conjectural TERM 1693 1854308 - 1854322 + g 70 -5.6 -4.36914 | overlap 1854301 1854311 GGCCCCCTCTGCGCG GAGGGC CGT GCCGTC TTTTGTGACGGAAAG PAE3118 1855410 - 1854520 - | ribose ABC transporter, permease protein TERM 1694 1855284 - 1855266 - G 100 -10.2 -5.11063 | AGTAGTCAACAAAAA GGGGCCCC GAC AAGGCCCC TAGCAACATTATGCC PAE3119 1856414 - 1855407 - | ribose ABC transporter, permease protein TERM 1695 1855689 - 1855673 - G 81 -9.3 -4.12188 | overlap 1855674 CGACTACTTGTAAAA TGCCGGC CAA GCCGGCC GTTAAGGCCCCAATT TERM 1696 1855688 - 1855674 - G 79 -12.8 -3.06991 | overlap 1855673 GACTACTTGTAAAAT GCCGGC CAA GCCGGC CGTTAAGGCCCCAAT TERM 1697 1855921 - 1855938 + g 74 -9.9 -3.54129 | opp_overlap 1855920 GGCATTTTAACCGAC TCCTCTG GTTG CAGAGGA TTTGACAACGCTGTA PAE3120 1857847 - 1856411 - | ribose ABC transport system ATP-binding TERM 1698 1856673 - 1856686 + g 79 -2.4 -5.1963 | CCCCGGGCCAGCTCC CTAG CCACTA CTAG TTTTTGTTGATTGCC TERM 1699 1857862 - 1857873 + r 72 -5.8 -4.4715 | opp_overlap 1857851 TCAACTGGCGACGCC GAGC CCGA GCTC TTTTCTAAGTTGGGC PAE3121 1859088 - 1857847 - | sugar binding protein TERM 1700 1858292 - 1858267 - G 77 -10.4 -3.60475 | opp_overlap 1858267 AACGCCTATGGCAAA GGGCGGGC CCATGTTCCT GCCCGCCC TCTTCCCGGCCTCAG PAE3123 1859449 - 1859111 - | hypothetical protein PAE3124 1861523 - 1859433 - | penicillin amidase TERM 1701 1861234 - 1861220 - G 77 -6.4 -4.64861 | TGGTCCTAAAATAAA CGTCTG TAT CAAACG CCGCCTCGCCTAATA TERM 1702 1861400 - 1861388 - G 71 -10.5 -2.85078 | opp_overlap 1861391 1861392 1861394, overlap 1861387 TATAGTTTACCAAAG GCGCC GGC GGCGC GGGGCGCGCCACTGC TERM 1703 1861391 - 1861415 + g 81 -9.1 -4.07885 | opp_overlap 1861388 1861387, overlap 1861392 1861394 AGTTTACCAAAGGCG CCGGCGGCGCG GGG CGCGCCACTGC TTTTAAAGGCCCCTG TERM 1704 1861392 - 1861414 + g 79 -12.6 -3.04517 | opp_overlap 1861388 1861387, overlap 1861391 1861394 GTTTACCAAAGGCGC CGGCGGCGCG GGG CGCGCCACTG CTTTTAAAGGCCCCT TERM 1705 1861394 - 1861412 + g 75 -11.6 -3.08032 | opp_overlap 1861388 1861387, overlap 1861392 1861391 TTACCAAAGGCGCCG GCGGCGCG GGG CGCGCCAC TGCTTTTAAAGGCCC PAE3125 1862137 - 1861604 - | hypothetical protein PAE3127 1863570 - 1862107 - | hypothetical protein PAE3129 1864431 - 1863667 - | hypothetical protein PAE3130 1864581 - 1864889 + | hypothetical protein PAE3132 1864890 - 1865189 + | hypothetical protein TERM 1706 1865235 - 1865271 + F 75 -10.1 -3.53012 | overlap 1865232 ACTGCCATCTACGCG CCGCTTTAGGCGCTA TTCCGCC TCGCGCCTACGGCGG TTTGACAGCGCCCCG PAE3134 1865372 - 1866613 + | hypothetical protein TERM 1707 1867409 - 1867391 - g 74 -3.2 -4.96501 | CTGGAGAAAAATAAA TTATCAAT AAA ACTGACAA GCAACGTGGGGATAC PAE3135 1866650 - 1867447 + | hypothetical protein rpl14p 1867554 - 1867988 + | 50S ribosomal protein L14P TERM 1708 1868112 - 1868102 - g 71 -2.4 -4.89393 | CAAAGCTGACAAAAA TGCC GCC GGCG AAAAAAATAGCGTTA PAE3137 1868056 - 1868376 + | hypothetical protein PAE3138 1868358 - 1868729 + | hypothetical protein PAE3140 1870076 - 1868763 - | S-adenosyl-L-homocysteine hydrolase PAE3141 1870837 - 1870244 - | hypothetical protein PAE3143 1871674 - 1872519 + | hypothetical protein TERM 1709 1872738 - 1872720 - g 83 -10.2 -4.07568 | overlap 1872721 TGCCTGTGTCTAAAA TCGCCGAG GAA CTCGGCGT AACTGAGGCCACGGT TERM 1710 1872737 - 1872721 - g 87 -13.7 -3.04398 | overlap 1872720 GCCTGTGTCTAAAAT CGCCGAG GAA CTCGGCG TAACTGAGGCCACGG PAE3144 1872521 - 1872955 + | hypothetical protein TERM 1711 1873360 - 1873345 - g 91 -5.4 -5.42862 | gap 1, overlap 1873347 AGATTTTCAAAAAAA GGCGAGA TCT TC-CGCC CCATAGGCGGATCGC PAE3145 1872946 - 1873608 + | hypothetical protein PAE3146 1874904 - 1873600 - | hypothetical protein TERM 1712 1874308 - 1874289 - G 74 -7.8 -4.07568 | overlap 1874305 CCGCCTCTTTTAAAA CAGCGCTG TAAT CAACGCCG GCAAGCACGGGCACT TERM 1713 1874935 - 1874918 - H 72 -2.8 -5.02476 | ATACGTGTTAAAAAA CTATAT GTTTAT ATATAG ATCGGAGTGTTTAGC PAE3148 1875008 - 1875601 + | hypothetical protein PAE3151 1876045 - 1875563 - | hypothetical protein PAE3152 1876542 - 1876042 - | thiol:disulphide interchange protein, putative TERM 1714 1876164 - 1876129 - G 83 -9.8 -4.14392 | gap 1, overlap 1876131 1876136 GGCGAAGTTGTAAAA TAGGATAGTCGGCGTTC CGT AAACGCCGACC-TCCTC CGCCGCTTTTTCACA TERM 1715 1876162 - 1876131 - G 88 -12.4 -3.67 | gap 1, overlap 1876129 1876136 CGAAGTTGTAAAATA GGATAGTCGGCGTTC CGT AAACGCCGACC-TCC TCCGCCGCTTTTTCA TERM 1716 1876158 - 1876136 - G 87 -14.2 -3.01785 | overlap 1876131 1876129 TTGTAAAATAGGATA GTCGGCGTTC CGT AAACGCCGAC CTCCTCCGCCGCTTT TERM 1717 1876293 - 1876305 + g 78 -9.1 -3.89822 | overlap 1876290 1876289 TAAGCTTTCTGTGCA GAGGC TCT GCCTC TTTATGAACTACGTA TERM 1718 1877216 - 1877179 - g 89 -13.5 -3.35465 | overlap 1877180 1877187 ATCGACATAGACGAA GTGGAGAAGAGCCACAT TAAG ATGTGGCTCCTCGCCAA GGCCACTGTGGGGAG TERM 1719 1877215 - 1877180 - g 100 -17 -2.60797 | overlap 1877179 1877187 TCGACATAGACGAAG TGGAGAAGAGCCACAT TAAG ATGTGGCTCCTCGCCA AGGCCACTGTGGGGA TERM 1720 1877208 - 1877187 - g 89 -13.1 -3.37732 | overlap 1877180 1877179 AGACGAAGTGGAGAA GAGCCACAT TAAG ATGTGGCTC CTCGCCAAGGCCACT PAE3153 1876657 - 1877388 + | hypothetical protein TERM 1721 1877772 - 1877745 - g 84 -7.8 -4.67038 | TCTTGAAAACTAAAA CTGGCTACAG AGAAAGGG CTATAGCCAG ATTCAAATCGCTTAT TERM 1722 1878252 - 1878283 + G 74 -10.8 -3.16668 | overlap 1878282 GAGACGTAGTGCGCG GCTCAGTGGGCGTG GCCT CAGGCCCGGTGAGC TTCATGAGGCTCTTC PAE3155 1877462 - 1880011 + | ribonucleotide reductase PAE3156 1880063 - 1880539 + | hypothetical protein PAE3157 1880574 - 1880843 + | hypothetical protein PAE3158 1880874 - 1882229 + | seryl-tRNA synthetase pyrH 1882995 - 1882342 - | uridylate kinase TERM 1723 1882660 - 1882642 - G 70 -10.2 -3.14211 | AGCCTCCGCGACCAA CGCCGCCA CTG TGGCGGTG GACTGGCCTGGCTGA PAE3161 1883500 - 1882979 - | hypothetical protein TERM 1724 1883790 - 1883778 - g 70 -10.5 -2.80533 | overlap 1883777 1883771 TTGCAAAATTATAAG GGGCG AGG CGCCC GCTTGGAAAGTCTAC PAE3162 1883749 - 1884162 + | HIT family protein PAE3163 1884193 - 1884657 + | LuxR family regulatory protein conjectural PAE3165 1885849 - 1884650 - | translation-associated GTPase TERM 1725 1885570 - 1885559 - G 74 -5.8 -4.58283 | TAAGTGGTCTAAAAA CTGG TTCC CCAG CCCTCTGCCTTGCCA PAE3166 1885991 - 1886113 + | paREP2a TERM 1726 1886148 - 1886135 - f 74 -3.8 -4.96501 | GCGTACAAAAATAAA GTCC TCAATT GGAC TACCATCGTGTATTA TERM 1727 1886452 - 1886464 + G 72 -6.2 -4.3208 | TCCATTAATGCCGCG CGCC GCCAG GGCG TTTTCAATTATAACA PAE3167 1886180 - 1887397 + | hypothetical protein TERM 1728 1888828 - 1888815 - g 83 -5.9 -4.91511 | opp_overlap 1888815 AGTCGACGAGAAAAA CGCCC CCAT AGGCG TTGTCACTAAAGACG PAE3169 1887427 - 1889397 + | hypothetical protein TERM 1729 1889536 - 1889523 - g 76 -3.8 -4.93365 | CCGCATAATGAAAAA GCTC GGCATT GAGC CAGGGGATTACGTGG TERM 1730 1890431 - 1890411 - g 70 -11.1 -2.82015 | CCCAGACGCAGTAGA CCCGGCGTT GAG AAGGCCGGG GAGATTCGACAGAGA TERM 1731 1890825 - 1890805 - g 78 -11.1 -3.54951 | opp_overlap 1890803 GAGGTCATTATAGAA GTCCCAGAG GTG CACTGGGAC GATATTGGCGGCTAC TERM 1732 1891106 - 1891089 - g 72 -5.5 -4.57837 | opp_overlap 1891093 AGAGGTCTTTAAAAA GGCGC GTATGGCG GCGCC CTGCGTTATATTCTT TERM 1733 1891442 - 1891459 + G 72 -9.8 -3.28712 | CAGAGGGCTACACCG GCGCCG ACATTG CGGCGC TTGTGAGAGAGGCGG PAE3171 1889431 - 1891647 + | AAA family ATPase, CDC48 subfamily protein PAE3172 1891678 - 1892205 + | small heat shock protein, hsp20 homolog, conjectural PAE3173 1892651 - 1892202 - | hypothetical protein TERM 1734 1893765 - 1893751 - g 75 -11.4 -3.02043 | AAGCGCGCTGGAAGA GGCAGG AGC CCTGCC AAAATACGCGGGGAA PAE3175 1892717 - 1893820 + | hypothetical protein TERM 1735 1894080 - 1894059 - g 82 -2.9 -5.27938 | ACGGCGAAATAAAAA TTGAGCCCG ACAT CCCGCTCAA CTGGTTGGAGTGGGC PAE3176 1893887 - 1894225 + | hypothetical protein PAE3177 1894255 - 1894575 + | hypothetical protein rps11p 1894599 - 1895000 + | 30S ribosomal protein S11P TERM 1736 1895040 - 1895062 + G 78 -12.7 -2.87344 | gap 1, opp_overlap 1895039 1895038 CCGTTATTGAAAACT GC-GGCGGCC AGCC GGCCGCCAGC TCTCTAAAAGACCTC PAE3180 1895000 - 1895272 + | hypothetical protein TERM 1737 1895315 - 1895351 + F 72 -9.4 -3.55071 | gap 1 TTGCGGCAGTAGATG GCCG-GCGCCGGAAAAG CTGA TTTTACAGGCGCGCGGC TTTCACCAGCTGTAC TERM 1738 1895739 - 1895722 - g 70 -10.5 -2.71011 | AGCTGTGTCGAAGGA GGCGGCG CCCA CACCGCC AGTTGCAGCGGAGGG TERM 1739 1896764 - 1896798 + G 100 -15 -3.55801 | CAAGAGTGTCCGGGT TCTATCCCTGCGCCTG ATG TGGGCGCTGGGATGGA TTTAGGCAAGTTGAT PAE3182 1895552 - 1897057 + | hypothetical protein PAE3183 1897344 - 1897231 - | hypothetical protein PAE3184 1897479 - 1898570 + | pyruvate formate-lyase activating enzyme-like protein TERM 1740 1898695 - 1898678 - f 72 -8.3 -3.67634 | overlap 1898680 CAGGAGTTCAAAACA CAGCGCC GAGA GGCGCAG ACAATTTAACACGCT TERM 1741 1898693 - 1898680 - f 73 -9.5 -3.41366 | overlap 1898678 GGAGTTCAAAACACA GCGCC GAGA GGCGC AGACAATTTAACACG TERM 1742 1899139 - 1899149 + F 74 -6.8 -4.26188 | ACTCCTATTGAATTT CTGC CGA GCAG TTTTGCCTCTATGAG TERM 1743 1899590 - 1899611 + F 80 -12.3 -3.08471 | gap 1 GATTTCTGGCAAGCT GGCCGGCAGG CAC CCTGC-GGCC TTGGATAGAATTATA TERM 1744 1900237 - 1900251 + G 78 -8.5 -4.17048 | overlap 1900244 TTGCAGTGGATTTGG CCGCG GACAA CGCGG TTGTTTTCGCCAAGG PAE3185 1899907 - 1900284 + | paREP9, associated with SRSRs TERM 1745 1901043 - 1901028 - g 74 -3.2 -4.98911 | TATGATAAAAACAAA CAAGGC TGAG GACTTG CGGCGCTACGCGAGG TERM 1746 1901178 - 1901136 - g 74 -9.8 -3.53012 | opp_overlap 1901140 1901147 CGCCCTGTCTCTAAA CGCCGTGGAGTTCAACCACA TTG TGTCGCTGATTTACACGGCG GATAAAATCGCGGAC PAE3187 1900588 - 1901244 + | hypothetical protein TERM 1747 1901594 - 1901624 + G 74 -7.5 -4.00782 | gap 1, opp_overlap 1901596, overlap 1901596 1901596 GTGCAAAACGCTGAA AAGGG-GAAGGCCG CTGG CGGCCCTCTCCCTC TTTCTAGTGATGTAC TERM 1748 1901596 - 1901621 + G 77 -12.5 -2.74836 | opp_overlap 1901596, overlap 1901594 1901596 GCAAAACGCTGAAAA GGGGAAGGCCG CTGG CGGCCCTCTCC CTCTTTCTAGTGATG TERM 1749 1901621 - 1901596 - g 95 -12.5 -4.19276 | opp_overlap 1901596 1901594 1901596 GCAAAACGCTGAAAA GGGGAAGGCCG CTGG CGGCCCTCTCC CTCTTTCTAGTGATG TERM 1750 1901596 - 1901622 + G 77 -10.1 -3.59266 | gap 1, opp_overlap 1901596, overlap 1901596 1901594 GCAAAACGCTGAAAA GGG-GAAGGCCG CTGG CGGCCCTCTCCC TCTTTCTAGTGATGT TERM 1751 1901784 - 1901773 - g 70 -7.2 -4.11216 | overlap 1901774 CGCTGAGGCCGAAAA CCGC GGCC GCGG TAAACCTCACGGTGG PAE3188 1901244 - 1902008 + | hypothetical protein PAE3189 1902636 - 1901965 - | hypothetical protein PAE3192 1902841 - 1902668 - | paREP4 PAE3193 1902925 - 1903014 + | hypothetical protein TERM 1752 1903161 - 1903184 + GF 72 -10.2 -2.9294 | gap 1 AACGGCCTTCGCAGT GCTCGCGGCGG TGT CAGCCGCG-GC TATGTACATAATCTC PAE3193a 1903036 - 1903455 + | hypothetical protein TERM 1753 1903771 - 1903735 - gf 71 -7.2 -4.12456 | gap 1, opp_overlap 1903735 1903736 1903768 1903769, overlap 1903736 ATACTACGCCCAAAA CCCGGAGGCCCTC-GCG ACCT CGCCGAAGATCTCCGGC TTTAAAGCCCTTTTC TERM 1754 1903770 - 1903736 - gf 73 -10.7 -3.06991 | gap 1, opp_overlap 1903735 1903736 1903768 1903769, overlap 1903735 TACTACGCCCAAAAC CCGGAGGCCCTC-GCG ACCT CGCCGAAGATCTCCGG CTTTAAAGCCCTTTT PAE3195 1903367 - 1903951 + | hypothetical protein TERM 1755 1904021 - 1904057 + F 87 -14.4 -2.92613 | gap 1, overlap 1904019 1904027 CTGATACAAGCTTAC GGC-AGGCCGCCGCCGC GTTG GCGGCGGTAGTCTAGCC TGGTTTAGGATGGCG TERM 1756 1904027 - 1904047 + F 90 -16.1 -2.64091 | overlap 1904021 1904019 CAAGCTTACGGCAGG CCGCCGCCG CGT TGGCGGCGG TAGTCTAGCCTGGTT PAE3196 1904252 - 1905253 + | hypothetical protein PAE3197 1907256 - 1905244 - | hypothetical protein TERM 1757 1905353 - 1905336 - G 72 -7.7 -3.86822 | opp_overlap 1905336, overlap 1905337 GAAGCGGCGGATAAA CGCAGAG ATTT CTCTGCA TTAATACACGCCGCT TERM 1758 1906963 - 1906924 - G 85 -11.4 -3.68704 | gap 1, opp_overlap 1906959, overlap 1906926 1906929 ACAAGAGGTTAAGAA CAGC-ACGGCGTAACTGAG CCA CCCAGCTTCGCCGTTGCGG TATACATAATATCCG TERM 1759 1906961 - 1906926 - G 83 -12.6 -3.41726 | gap 1, opp_overlap 1906959, overlap 1906924 1906929 AAGAGGTTAAGAACA GC-ACGGCGTAACTGAG CCA CCCAGCTTCGCCGTTGC GGTATACATAATATC TERM 1760 1906957 - 1906929 - G 82 -13.1 -2.85813 | overlap 1906926 1906924 AGGTTAAGAACAGCA CGGCGTAACTGAG CCA CCCAGCTTCGCCG TTGCGGTATACATAA PAE3198 1911080 - 1907253 - | ATP-dependant helicase, TERM 1761 1909730 - 1909745 + g 74 -6 -4.57569 | opp_overlap 1909728 1909730, overlap 1909731 CCGTCAGAATAATGA GCGGGG AGCG CCCCGA TTTTTCAAGCCATGC PAE3199 1911952 - 1911260 - | U/G & T/G mismatch specific glycosylase (PA-MIG) TERM 1762 1911448 - 1911458 + g 85 -6.8 -4.82855 | GCTCCCTGTCGGTAT GAGG CCT CCTC TTTTTAGATTTGATG PAE3200 1911993 - 1913024 + | hypothetical protein PAE3201 1914406 - 1913015 - | C-5 cytosine-specific DNA methylase PAE3202 1914869 - 1915129 + | hypothetical protein PAE3203 1915250 - 1916245 + | hypothetical protein TERM 1763 1917074 - 1917050 - gf 72 -9.9 -3.29144 | opp_overlap 1917052 CGAGGGGTTTGAGAA CGGCAGGTGCA GGC CGCACCCGGCG TTGACGAAAGACGTC TERM 1764 1917324 - 1917346 + GF 72 -10.6 -2.78596 | opp_overlap 1917317, overlap 1917326 ACTCAGAACCCCCTG GACGTCAAGG AGT CTTTGGCGTC TGTGGTGGGGAACTA PAE3204 1916232 - 1917500 + | hypothetical protein PAE3205 1917475 - 1918131 + | hypothetical protein TERM 1765 1918181 - 1918166 - f 70 -2.4 -5.00267 | overlap 1918167 1918168 AAGGATAAAAATAAA CGCGGC CACG ACCTCG TGGCGATATCCCCCT PAE3206 1918181 - 1918636 + | paREP8 PAE3207 1918759 - 1919223 + | paREP8 TERM 1766 1919231 - 1919256 + F 83 -9.6 -4.09108 | TGGGCTAGTACCCAC CGCTGTGCGG AATCTG CCGCCCGGCG TTTATCTAGCTTGGG TERM 1767 1919923 - 1919903 - g 75 -6.8 -4.4009 | GTGCATGTCATAAAA GGGGCC ATGATAGTA GGCCCC GTAGACGCGCCGCTG TERM 1768 1920136 - 1920109 - g 74 -10.6 -3.15257 | gap 1, overlap 1920105 1920107 GGGTAAATACAGAGA CCTCCTCA-GCCC TGA GGGCGTGAGGAGC GAAAAGCTTGCCCGC TERM 1769 1920507 - 1920520 + G 70 -4.5 -4.57073 | overlap 1920506 1920508 TTGACGTCAAGTGCG TGGAG CCCT CTCCG TTTTTCAAACAGCTG TERM 1770 1921071 - 1921088 + G 71 -3.3 -4.83169 | overlap 1921074 GGGGGAAGGCCGGAG CCGGCAC CCAC GTGCTTG TTTTTGTCAAGACAT TERM 1771 1921074 - 1921085 + G 74 -5.8 -4.52873 | overlap 1921071 GGAAGGCCGGAGCCG GCAC CCAC GTGC TTGTTTTTGTCAAGA PAE3208 1919555 - 1921105 + | helix-turn-helix protein TERM 1772 1921453 - 1921481 + G 71 -10.9 -2.90571 | overlap 1921452 1921453 GCTAGGCTGGGGCTA GCCGCGGCGGC GTTTATA GGCGCCGTGGC TGTGATTAAGCCGTT PAE3209 1921102 - 1921944 + | hypothetical protein PAE3209a 1922044 - 1921952 - | hypothetical protein TERM 1773 1922182 - 1922198 + G 74 -10.8 -3.21276 | overlap 1922183 1922187 1922188 GGGCTCGGGGCCCTT GCGGCG GCGGG CGCCGC TGTTGTAAACACGGC TERM 1774 1922183 - 1922200 + G 76 -10.5 -3.28712 | overlap 1922182 1922187 1922188 GGCTCGGGGCCCTTG CGGCGGC GGGC GCCGCTG TTGTAAACACGGCGA PAE3211 1922134 - 1922829 + | hypothetical protein PAE3212 1922864 - 1923607 + | hypothetical protein TERM 1775 1924190 - 1924180 - g 71 -3.2 -4.77036 | GGTTATTACGAAAAA GCTC AGA GAAC AGTGGTACGTCCTAG TERM 1776 1924399 - 1924374 - g 81 -9.7 -3.92373 | opp_overlap 1924367 1924361 TACCGTACCCACAAA GAGTGGTATGG TTTG CCACTCCACTC CCGGCAAATTTGAAA PAE3214 1923611 - 1924420 + | hypothetical protein TERM 1777 1924795 - 1924814 + T 80 -6.4 -4.87626 | CCGCTTATTTGACAC GTGGCG AAATATAC CGCCAC TTTTTCATATTGGGA PAE3215 1925904 - 1924912 - | hypothetical protein PAE3216 1925964 - 1927520 + | ATPase TERM 1778 1928164 - 1928176 + G 73 -9.1 -3.59979 | GCTACCCACCCGCCT CCTCC AGA GGAGG TTTAGGCTGGGGGCG PAE3217 1927517 - 1928266 + | hypothetical protein PAE3218 1929119 - 1928256 - | hypothetical protein PAE3219 1930181 - 1929123 - | paREP2b PAE3220 1930394 - 1930221 - | paREP2b PAE3221 1931137 - 1930451 - | dimethyladenosine transferase TERM 1779 1931130 - 1931111 - G 72 -5.6 -4.58395 | gap 1, opp_overlap 1931112, overlap 1931112 1931113 GGGATCGCGTAAAAA GTGCTGCGC CAA GCGCCGC-C TCTTCACGACATATT PAE3222 1931170 - 1932996 + | glutamyl-tRNA(Gln) amidotransferase subunit E TERM 1780 1933281 - 1933269 - g 70 -6.2 -4.21768 | GAATTAAGGTTAAAA CGCC AGGCG GGCG AACTGTTATACACTA TERM 1781 1933321 - 1933305 - g 72 -5.1 -4.49981 | overlap 1933312 TACACTACGAGAAAA GGGCA AAGGGCG TGCCC AAATGCCCCATTACT PAE3224 1933217 - 1933471 + | ribosomal protein L34 PAE3225 1933477 - 1934031 + | cytidylate kinase TERM 1782 1934152 - 1934187 + G 85 -6.7 -4.77165 | opp_overlap 1934152, overlap 1934147 AGAAAGTGGCTATAA TCGGCGCCGGGCCTG CTGGAT TAGGCGCGGCGGGGA TTTTATTATGCAACG TERM 1783 1934870 - 1934830 - g 77 -8.2 -4.08216 | gap 1 TGAGGTTCGTGAAAA TGAGGCTAGGCCCCCCGGA CAAG TCGGGCAGGCCC-GCCCCA GAGCCAATACCCGGC PAE3227 1934085 - 1935128 + | putative glutamate synthase subunit beta TERM 1784 1935122 - 1935135 + T 78 -6.7 -4.59773 | CGTAGACGAGTTCTT GAGGT AATT ACCTC TTTTTCGCGATAACC PAE3228 1935836 - 1935129 - | fibrillarin PAE3232 1937329 - 1936064 - | nop family pre-rRNA processing protein TERM 1785 1937723 - 1937681 - H 83 -9.6 -4.1822 | overlap 1937682 CCCGACTGTAATAAA CCTGGGGGCCGTAGCTCAGC CAG GCAGAGCGGCGGGCTCCAGA CCCGTAGGGCGGGGG TERM 1786 1937722 - 1937682 - H 75 -10.9 -3.10611 | overlap 1937681 CCGACTGTAATAAAC CTGGGGGCCGTAGCTCAGC CAG GCAGAGCGGCGGGCTCCAG ACCCGTAGGGCGGGG PAE3235 1937914 - 1938468 + | paREP1 PAE3237 1939842 - 1938496 - | beta-lactamase-like protein PAE3238 1940780 - 1939845 - | DNA repair protein radA TERM 1787 1940708 - 1940718 + g 70 -6.8 -4.11371 | overlap 1940704 CCGAAGTGACTCCCA GCTC TCT GAGC TTTTCCAAAGTCTTA PAE3239 1940983 - 1940801 - | hypothetical protein PAE3241 1941134 - 1942036 + | hypothetical protein PAE3242 1942287 - 1942033 - | hypothetical protein TERM 1788 1942180 - 1942202 + g 70 -4.8 -4.56597 | opp_overlap 1942180 CCTCTGGTAATTAAG CCTCGCGT AAAGGGC AAGCGAGG TTTTTGAAAGGGGGC TERM 1789 1942283 - 1942300 + g 70 -4.9 -4.57073 | gap 1 TTAAATCTTGATCTC CTCATGAG CTT CTC-TGAG TTTTTCCGCCAGCTG PAE3243 1942762 - 1942268 - | hypothetical protein TERM 1790 1943243 - 1943264 + G 77 -8.7 -4.07568 | overlap 1943246 CGGGGATTCCCTCAG CGACGCCAT GGGG ATGGCGTGG TTTTCAGGCAACAGG PAE3244 1942935 - 1943744 + | chromosome partitioning ATPase, parA family protein, conjectural PAE3245 1944114 - 1943887 - | hypothetical protein TERM 1791 1944065 - 1944085 + g 77 -8.2 -4.13561 | TTTACGCCCGTTATT CCCTCCCA CTCTT TGGGCGGG TCTTTTTTAAACGCA PAE3246 1944682 - 1944155 - | hypothetical protein TERM 1792 1944232 - 1944244 + g 72 -6.2 -4.37886 | GCTGGGCAACCTCGC GGGG ATCGG CCCC TTTTATGAAAAGTAC PAE3247 1945484 - 1944663 - | morphine 6-dehydrogenase, conjectural PAE3249 1946212 - 1945514 - | hypothetical protein PAE3250 1947594 - 1946209 - | hypothetical protein TERM 1793 1948302 - 1948285 - g 76 -4.1 -5.01732 | overlap 1948287 AAGCTGCGTAAAAAA CGTCTGT TATT ACAGAAG AGGCAGTGGGTGTTG PAE3251 1947673 - 1948401 + | hypothetical protein TERM 1794 1948411 - 1948398 - T 88 -3.9 -5.65177 | opp_overlap 1948398, overlap 1948402 ATATCTAGAAAAAAA TTAAG ATTT CTTAA TTTTTAAAATATCGC PAE3252 1948964 - 1948398 - | hypothetical protein PAE3253 1949066 - 1949542 + | hypothetical protein PAE3254 1951462 - 1949537 - | hypothetical protein TERM 1795 1950793 - 1950769 - G 88 -11.4 -3.85698 | gap 1, overlap 1950770 TCCTGCGCGCATAAA GCCTCCCGCCG TGGG CGGCGAG-GGC GAAAACCCCACTTGC TERM 1796 1950791 - 1950770 - G 78 -12.3 -2.91276 | gap 1, overlap 1950769 CCTGCGCGCATAAAG CCTC-CCGCC GTG GGCGGCGAGG GCGAAAACCCCACTT TERM 1797 1951103 - 1951121 + g 100 -16 -3.40403 | TTGCGCCCCAAGCTC CCCCCTCG GGA CGAGGGGG TTGTCGTAAAAGGAA rpl40e 1951510 - 1951671 + | 50S ribosomal protein L40e TERM 1798 1951705 - 1951676 - T 77 -9.3 -3.90738 | gap 1, opp_overlap 1951677, overlap 1951665 1951677 GAAAGAAGTAGTAAA CCGCC-AAAGGGGA TTC TCCCCTCTAGGCGC CGTCACCAACTCGGG TERM 1799 1951704 - 1951677 - T 79 -12.8 -2.93358 | gap 1, opp_overlap 1951677, overlap 1951676 1951665 AAAGAAGTAGTAAAC CGCC-AAAGGGGA TTC TCCCCTCTAGGCG CCGTCACCAACTCGG PAE3257 1952688 - 1951861 - | DNA-(apurinic or apyrimidinic site) lyase (endonuclease IV) TERM 1800 1954579 - 1954554 - g 81 -4.6 -5.09762 | CGGCAATAAAGAAAA GGGAAAGCTC GGCAAA GAGCTGGCCC AGGAATGGGGAGGTT PAE3259 1952863 - 1954707 + | hypothetical protein PAE3260 1955276 - 1954764 - | hypothetical protein TERM 1801 1955205 - 1955191 - G 71 -3.4 -4.83246 | CCAGAAATAAACAAA GCCACC AAC GGGGAC CAAGGCCAGAAAAAC PAE3261 1957456 - 1955300 - | hypothetical protein PAE3262 1957504 - 1958001 + | hypothetical protein PAE3263 1958866 - 1957973 - | dihydroorotate dehydrogenase (pyrD) TERM 1802 1958222 - 1958190 - G 70 -5.6 -4.30161 | gap 1, opp_overlap 1958208 TTATATAAAAGTAAA CCGCTTAACCCGCCG CGCC CAACGC-TTAAGCGG GGGTCCTCTACTGGC TERM 1803 1958675 - 1958664 - G 79 -2.2 -5.24129 | overlap 1958672 CCGGGGCAGAAAAAA GAGA GGAA CCTC GAGTAAAGACCCGTC pyrE 1959420 - 1958854 - | orotate phosphoribosyltransferase TERM 1804 1959377 - 1959361 - G 70 -4.3 -4.55118 | overlap 1959362 1959363 CAAGTCGACATAAAA GGGGCTC TCC AAGCCGC TGGAGAGCTTAAACG PAE3265 1959887 - 1959432 - | aspartate carbamoyltransferase regulatory subunit TERM 1805 1959524 - 1959514 - G 81 -6.8 -4.68593 | opp_overlap 1959517, overlap 1959516 CGCACTAGGTAAAAA GTGG GCT CCAC GGGCTCCCGAGGCGC PAE3268 1961708 - 1960386 - | branched-chain amino acid binding protein, putative PAE3269 1961778 - 1962506 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative rpoK 1962988 - 1962668 - | DNA-directed RNA polymerase subunit K TERM 1806 1962904 - 1962918 + g 84 -7.8 -4.731 | ATTTAGTAAGGCGCG GGGGGT AGA ACTCCC TTTTATTAATAGCTT PAE3273 1964727 - 1963066 - | thermosome (chaperonin) beta subunit TERM 1807 1964314 - 1964329 + g 71 -3.2 -4.84359 | overlap 1964313 CTCTGCGACTTTTAA GGCG TAGTCCGC CGCC TTTTTATAGCCGTCA PAE3274 1965681 - 1964773 - | 2-ketoisovalerate ferredoxin oxidoreductase subunit beta PAE3275 1966832 - 1965678 - | 2-ketoacid ferredoxin oxidoreductase alpha subunit TERM 1808 1966734 - 1966765 + g 70 -6.6 -4.08767 | gap 1 AGTCTGGGGGGTAAT TGGGTATGCCGCTAT TAC AT-GCGGCTTAGCCA TTTTCACAGCGTAGG TERM 1809 1966796 - 1966807 + g 79 -3.6 -5.0538 | CCACTGCATAATTGC CCGT CAAT GCGG TTTTTTGAACTGCCA PAE3276 1967080 - 1966829 - | 2-ketoacid ferredoxin oxidoreductase delta subunit TERM 1810 1967353 - 1967335 - g 72 -6.6 -4.19678 | opp_overlap 1967336, overlap 1967336 CTAGAGGGCAAGAAA GCCCAGGC ACT GCCTGAGT TTGGCGCCGAGAGGA PAE3279 1967227 - 1967778 + | 2-ketoacid ferredoxin oxidoreductase gamma subunit PAE3281 1969124 - 1967775 - | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, conjectural TERM 1811 1969165 - 1969154 - H 70 -2.2 -5.01732 | AACGTTTTTAAAAAA TAGC TCTC GCCA CTTGGTGGAAATCTA TERM 1812 1969319 - 1969294 - g 74 -7.6 -4.08216 | GTACTTTTGCTAAAA TGGCCACG TGTCACCTGC CGTGGCCA GACGTAGTATTCATA PAE3282 1969170 - 1969877 + | hypothetical protein TERM 1813 1970298 - 1970280 - g 81 -13.2 -2.64155 | overlap 1970277 CGCCTCCTAAATCCA TAGTGGCC TAC GGCCACTA CCTCGGGGCGCTCAT PAE3284 1969958 - 1970380 + | hypothetical protein PAE3285 1970404 - 1971039 + | hypothetical protein PAE3286 1971184 - 1971029 - | hypothetical protein TERM 1814 1972076 - 1972063 - g 72 -8.1 -3.91473 | AGAAATGGGGATAAA GGCGT ATGA ACGCC TAATGCAACTATTAG PAE3287 1971332 - 1972330 + | cell division protein pelota (pelA), conjectural PAE3289 1972538 - 1972365 - | paREP4 PAE3290 1972784 - 1973272 + | hypothetical protein PAE3292 1973776 - 1973255 - | putative NTPase TERM 1815 1973419 - 1973429 + g 78 -5.4 -4.81249 | opp_overlap 1973419 GCGCAGTCTGTAAAT CTTC GCC GAAG TTTTTACATTTAAAC PAE3294 1974610 - 1973819 - | polyprenyl synthetase PAE3295 1974840 - 1974652 - | hypothetical protein TERM 1816 1974885 - 1974855 - H 78 -4.8 -4.99947 | opp_overlap 1974864 TGTAAGTAAATAAAA GTCCAAGTATTTAA AAA TTAAATTGCTGGAC AGCGGTAAGCTTATT ribH 1974924 - 1975376 + | riboflavin synthase subunit beta PAE3297 1976284 - 1975373 - | branched-chain amino acid aminotransferase PAE3298 1977267 - 1976281 - | ketol-acid reductoisomerase PAE3299 1977507 - 1977280 - | acetolactate synthase small subunit PAE3300 1979167 - 1977497 - | acetolactate synthase large subunit (ilvB) TERM 1817 1977613 - 1977632 + g 81 -5 -5.04385 | opp_overlap 1977613 TGTCTATAATTAAAT CGACGA TAAGCGGC TCGTCG TTTTTTAAAGCTCTA PAE3301 1979724 - 1979284 - | mutT/nudix family protein TERM 1818 1980248 - 1980274 + G 77 -6.6 -4.49337 | opp_overlap 1980248 1980254, overlap 1980254 GAAGACGGAAAAAGG CTTAAAGTACAC GAG GTGCACTTTTAG TTTTCTCCATTATAC PAE3303 1979774 - 1980274 + | hypothetical protein PAE3304 1980563 - 1980249 - | hypothetical protein PAE3309 1982408 - 1981116 - | mRNA 3'-end processing factor, conjectural TERM 1819 1982218 - 1982201 - G 88 -10.5 -4.12532 | opp_overlap 1982201 TTGTTGAGACATAAA GCGACGG GAGA CCGCCGC TGTGATCTAAATGCG rpl24p 1982618 - 1982989 + | 50S ribosomal protein L24P PAE3313 1982994 - 1983710 + | 30S ribosomal protein S4e PAE3314 1984135 - 1983707 - | hypothetical protein PAE3316 1985132 - 1984167 - | oligopeptide transport ATP-binding protein, putative TERM 1820 1984212 - 1984223 + g 74 -5.8 -4.45259 | overlap 1984199 TGGCTTTATCTCAAC GAGC TTAG GCTC TTCTTTTTCGCATTT PAE3317 1986103 - 1985135 - | oligopeptide transport ATP-binding protein, putative TERM 1821 1985934 - 1985899 - G 82 -3.2 -5.20781 | gap 1 CATCATAAAACAAAA TCTCGCCGC-CTACCTC CGC GACGTTTCGCGGCAAGA GCCTAATGATCGTGA TERM 1822 1986892 - 1986868 - g 85 -13.7 -2.70932 | opp_overlap 1986868, overlap 1986873 GGTTCTTGGCAACTA GGAAAGTCGTA AAG TACGACTTCCC TTGTGTTAAACAAGT TERM 1823 1986868 - 1986892 + G 85 -11.5 -3.65991 | opp_overlap 1986868 1986873 GGTTCTTGGCAACTA GGAAAGTCGTA AAG TACGACTTCCC TTGTGTTAAACAAGT TERM 1824 1986887 - 1986873 - g 72 -8.6 -3.84246 | opp_overlap 1986868, overlap 1986868 TTGGCAACTAGGAAA GTCGTA AAG TACGAC TTCCCTTGTGTTAAA PAE3318 1986150 - 1986932 + | kinase, conjectural PAE3319 1987758 - 1986898 - | hypothetical protein TERM 1825 1987141 - 1987156 + g 74 -10.4 -3.44794 | TCTAGACGCCATTAG GAGGCC AATA GGCCTC TTGTCATCGTCAATT TERM 1826 1987816 - 1987844 + H 70 -5.2 -4.46212 | GTTGCACTCAGCGAT CGGTCTCTCGGT CATAT ATCGCCAGACCG TTTTCTCATCACAAA PAE3320 1987908 - 1988831 + | D-3-phosphoglycerate dehydrogenase (serA) PAE3321 1988828 - 1989847 + | aminotransferase (class 5) PAE3323 1989828 - 1990622 + | hypothetical protein PAE3324 1991025 - 1990603 - | hypothetical protein PAE3325 1992347 - 1991088 - | tRNA CCA-pyrophosphorylase PAE3326 1992907 - 1992344 - | hypothetical protein PAE3327 1993341 - 1992904 - | DNA binding transcriptional repressor, conjectural PAE3329 1994270 - 1993374 - | transcription initiation factor IIB (TFIIB) TERM 1827 1993524 - 1993509 - G 77 -8.2 -4.14874 | opp_overlap 1993513, overlap 1993501 ATAACATGCGTAAAA CACCGC TGCA GCGGCG AGGACCTGCGGCTTT TERM 1828 1993782 - 1993799 + g 71 -2.6 -5.00616 | overlap 1993784 GATTTTTTTCAACGT GACGGC CGCTAT GCCGTG TTTTTTCAACACGAA PAE3330 1994515 - 1994267 - | H/ACA RNA-protein complex component Gar1 TERM 1829 1994482 - 1994438 - G 82 -13.5 -2.91912 | overlap 1994442 GTATGTATTTACATA CAGAGGGGGAACCTCGAAGAG CCT CACCACGAGGTTCCCCATATG GGAGTAGTGAAGAGC TERM 1830 1994478 - 1994442 - G 83 -12.9 -3.05993 | overlap 1994438 GTATTTACATACAGA GGGGGAACCTCGAAGAG CCT CACCACGAGGTTCCCCA TATGGGAGTAGTGAA TERM 1831 1994723 - 1994711 - g 87 -4.7 -5.28166 | opp_overlap 1994716 GAAAACGAAGAAAAA GGCGC TTG GCGGC GGCCCCCCGCAAATT PAE3331 1994625 - 1995020 + | 30S ribosomal protein S8e PAE3332 1995017 - 1995304 + | signal recognition particle TERM 1832 1995802 - 1995787 - g 77 -3.2 -5.02476 | overlap 1995775 1995773 ATACGGTTTAAAAAA CCGCAA ATAC TTGTGG TCAATAAGGCGGATC PAE3333 1995304 - 1996053 + | GTPase PAE3334 1996340 - 1996038 - | 50S ribosomal protein L21e PAE3335 1996428 - 1996763 + | hypothetical protein PAE3336 1996760 - 1997344 + | hypothetical protein PAE3337 1997744 - 1997346 - | translation initiation factor IF-5A PAE3338 1998614 - 1997775 - | 5'-methylthioadenosine phosphorylase II TERM 1833 1998443 - 1998417 - G 77 -11.4 -3.14132 | opp_overlap 1998414 GTGTCTTGGGAGGAA GGCCACTACGCG CCC CGCGACGCGGCC AACTATTACGTTATC PAE3339 1998646 - 1999134 + | hypothetical protein PAE3340 1999160 - 1999522 + | translation initiation factor SUI1-like protein PAE3342 2000277 - 1999780 - | hypothetical protein TERM 1834 2000117 - 2000081 - G 76 -12.2 -2.63596 | gap 1, opp_overlap 2000073 CTTGACTCCAGAGGA GTGGCGGCTCGGCCGCC TCCA GGCAGAC-AGCCGCCCC TCCAGTAGGTAATTG argS 2002223 - 2000331 - | arginyl-tRNA synthetase TERM 1835 2000803 - 2000814 + g 71 -2.2 -4.98255 | TCCGCAATTACTCCG CTCA CCTC TGGG TTTTTCTCCTTAACG TERM 1836 2001762 - 2001773 + g 72 -5.8 -4.41348 | opp_overlap 2001762 ATCGTCTACGTAGAA GTGG GTCT CCAC TTTATTTCCACAGAA TERM 1837 2002045 - 2002026 - G 71 -2.2 -4.89393 | opp_overlap 2002026 CAAACTTGATAAAAA TTCAAAAC GCTT GTTTTTAA TTAAATTAACTACCT rps28e 2002290 - 2002523 + | 30S ribosomal protein S28e PAE3345 2002520 - 2002696 + | ribosomal protein L24 rpl7ae 2003152 - 2002697 - | 50S ribosomal protein L7Ae PAE3348 2004275 - 2003184 - | branched-chain amino acid transport permease protein TERM 1838 2003793 - 2003769 - G 74 -9.9 -3.54741 | overlap 2003771 GATTACTGCGCCAAA GACGCCGCAGG CGA CTTGCGGCGTG TAAGTGCTAATCACC TERM 1839 2003791 - 2003771 - G 83 -12.5 -3.35046 | overlap 2003769 TTACTGCGCCAAAGA CGCCGCAGG CGA CTTGCGGCG TGTAAGTGCTAATCA TERM 1840 2004098 - 2004085 - G 72 -8.1 -3.8901 | opp_overlap 2004085, overlap 2004089 CTGTAAATTAGCAAA GCGAC TTTC GTCGC TATTCCACCCACGGC PAE3350 2005231 - 2004272 - | branched-chain amino acid transport permease protein PAE3353 2005342 - 2006691 + | branched-chain amino acid binding protein TERM 1841 2007148 - 2007129 - g 81 -5 -5.03145 | opp_overlap 2007119 CAATTGGCTAAAAAA GCCTTTCA AATT TTAAAGGC CGTTAGGCTTGTGGA PAE3354 2006724 - 2007494 + | branched-chain amino acid transport ATP-binding protein TERM 1842 2007541 - 2007519 - f 72 -8.3 -3.70081 | ATATAAGGCCAAGAA CGCACAGCC GGGGT GGCCGAGCG GCCCAAGGCGCGGGA TERM 1843 2007773 - 2007790 + F 70 -10.5 -2.53876 | overlap 2007783 CGGGCCTGCTAAGCC CGTCCCC ATAC GGGGGCG TGGGTTCAAATCCCA TERM 1844 2008502 - 2008523 + G 70 -7.2 -4.07568 | overlap 2008503 TCTAAGTTTTATGTT GCCCGGCT GGCTGA AGCCGGGA TTTTACAACGCCACG TERM 1845 2008503 - 2008522 + G 72 -10.7 -3.04398 | overlap 2008502 CTAAGTTTTATGTTG CCCGGCT GGCTGA AGCCGGG ATTTTACAACGCCAC TERM 1846 2009474 - 2009450 - g 76 -10.7 -3.34398 | overlap 2009448 GCCCCCTGGGAAATA CCCTCTGACTG TCT CAGTCAACGGG GTGAACTATACCTTT TERM 1847 2010019 - 2010044 + G 80 -5.3 -4.91873 | gap 1 TGTTGGGAGATCTCG CGCCGGGCGCGA GCG TCA-GCACGGCG TTTTTGCTTGATGTA PAE3356 2007897 - 2010269 + | hypothetical protein PAE3357 2010262 - 2011686 + | antibiotic resistance (efflux) protein, conjectural PAE3359 2011696 - 2012787 + | hypothetical protein PAE3361 2012769 - 2013188 + | hypothetical protein PAE3364 2013263 - 2014108 + | hypothetical protein TERM 1848 2014512 - 2014493 - g 71 -9.4 -3.54638 | ACAACCGCTGCGAAA TTAGCCAA GTAC TTGGCTAA GAGGGGGTATAAGGT TERM 1849 2014617 - 2014596 - g 81 -4.4 -5.07053 | overlap 2014586 AACTAGCCGAAAAAA TCGGCGTA CCGTTC TACGGCGA GAGAGACGGAAAAGA PAE3365 2014139 - 2015440 + | signal recognition particle PAE3367 2015524 - 2015916 + | hypothetical protein PAE3368 2015936 - 2017171 + | hypothetical protein TERM 1850 2017653 - 2017640 - g 70 -5.2 -4.36127 | GGCAATAAGTGAAAA CGGC TATATT GCCG CAATGAGAAAGGGGT TERM 1851 2018229 - 2018209 - g 100 -6.7 -5.54907 | opp_overlap 2018219, overlap 2018210 CCGACAAAATAAAAA GCCACCACA ACG TGGGGGGGC TACCGCCGTGGTTTC TERM 1852 2018226 - 2018210 - g 72 -7.9 -3.91317 | opp_overlap 2018219, overlap 2018209 CGACAAAATAAAAAG CCACCAC AAC GTGGGGG GGCTACCGCCGTGGT guaA 2017200 - 2018717 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1853 2019430 - 2019442 + G 77 -3.3 -5.07652 | overlap 2019431 CTGTGGGGCGTGTTA AGGGA TAA TCCCC TTTTATTTTACGACG TERM 1854 2019678 - 2019666 - g 71 -3.3 -4.77036 | TGCCAGGATTAAAAA CACAG TCG CCGCG TTGAGAAAGGCGCAT TERM 1855 2020279 - 2020248 - g 81 -12.2 -3.16872 | overlap 2020245 2020246 TAAAAGAAATAACTA CATCGCCGCGGTTG CGGA CATCCGCGGAGACG GCCTAGCCCTAGGGA PAE3371 2018908 - 2020299 + | gamma-glutamyltransferase PAE3373 2021095 - 2020895 - | paREP2b TERM 1856 2021089 - 2021107 + g 70 -5.9 -4.26188 | CCCTCTCCCCGTCTT GCCTCAC GCTGA GTGTGGC TTTTCCCTATCTCAA PAE3375 2021219 - 2021503 + | hypothetical protein PAE3376 2022444 - 2021500 - | beta-lactamase-like protein TERM 1857 2023163 - 2023137 - g 71 -10.8 -2.83822 | overlap 2023134 GTGACTTTAGAAGTA GGCGGCAGGG CGCTTTT CCCTGACGCC CCAACCTCACGGGGG PAE3378 2022708 - 2023427 + | sugar fermentation stimulation protein, conjectural PAE3380 2024258 - 2023407 - | hypothetical protein TERM 1858 2024532 - 2024542 + G 70 -4.6 -4.56597 | overlap 2024517 2024522 TCGTGGCCAGCGTCA GGGC GCG GCTC TTTTTCACGCACGGA PAE3381 2024297 - 2024881 + | beta-lactamase-like protein TERM 1859 2025440 - 2025427 - g 86 -5.9 -5.16237 | overlap 2025428 AATCCTATTAAAAAA CCCCC CGCC GGAGG TGAGAGACGAGGTAA TERM 1860 2027330 - 2027362 + G 75 -11.3 -2.84325 | opp_overlap 2027327, overlap 2027336 TTGGGACACAGAGGG GTTAGAGTCGGCGTG ACG CACCCCGACTTTTAC TACTATTTAAACAAG TERM 1861 2027336 - 2027356 + G 93 -11.1 -4.37067 | opp_overlap 2027327, overlap 2027330 CACAGAGGGGTTAGA GTCGGCGTG ACG CACCCCGAC TTTTACTACTATTTA TERM 1862 2027455 - 2027439 - g 71 -9.5 -3.48593 | CAGTTGTTGAGATAA TGATACC GCA GGTATCA GACGTGAGGGAAATT PAE3383 2025224 - 2027971 + | pyruvate phosphate dikinase TERM 1863 2028007 - 2027989 - f 88 -5.4 -5.47821 | AGCCATTTAAAAAAA CATATATA TTT TACATATG TGGACAAGGCTGAAG PAE3386 2028163 - 2028432 + | hypothetical protein TERM 1864 2028558 - 2028538 - T 84 -8.3 -4.71426 | overlap 2028523 CGGTTATTAAGAAAA CCGCCTTCT TTA AAAAGGCAG TAGATAGAAAGACTT TERM 1865 2028676 - 2028662 - T 88 -12.8 -3.53012 | GGTCCCGGGTTCAAA GGCGGC TTT GCCGCC GAATCGATCCCGGCC PAE3387 2029158 - 2028820 - | hypothetical protein PAE3390 2029490 - 2029215 - | hypothetical protein PAE3391 2029873 - 2029529 - | hypothetical protein PAE3393 2030595 - 2029927 - | hypothetical protein TERM 1866 2030213 - 2030195 - G 81 -10.3 -3.93659 | opp_overlap 2030195 2030194 2030192 2030209 ACTAAAACTATTAAA TCGGCCT TGTCT AGGCCGA ATGTTTCAATGGGCG PAE3394a 2031031 - 2030663 - | hypothetical protein PAE3397 2031532 - 2031071 - | hypothetical protein PAE3399 2033282 - 2031561 - | hypothetical protein PAE3402 2033393 - 2034172 + | hypothetical protein PAE3403 2034162 - 2034644 + | hypothetical protein PAE3404 2035596 - 2034655 - | acyl coenzyme A thioester hydrolase TERM 1867 2034903 - 2034917 + g 70 -7 -4.14243 | opp_overlap 2034903 TACTTGTAGAACCCA CGTGCG TCA CGCCCG TTTTGACCTCAACTA TERM 1868 2035819 - 2035831 + G 74 -10.5 -3.21099 | TGAGGCTATTACGGC CGCGG CCG CCGCG TTACTCCTAGCAAAA TERM 1869 2036302 - 2036287 - g 72 -4.6 -4.72986 | overlap 2036289 GAGGCGTATGAAAAA CGCCTC CAGA GAGGAG TTAGAAAACGTTTTG PAE3406 2035643 - 2036410 + | hypothetical protein PAE3407 2037302 - 2036523 - | hypothetical protein TERM 1870 2037036 - 2037024 - G 84 -10.5 -3.85698 | GTGGGCTTTGACAAA GGCCC GCG GGGCC AGCCCCGCCTCCCCA PAE3409 2038134 - 2037295 - | 2-dehydropantoate 2-reductase (ketopantoate reductase) TERM 1871 2037728 - 2037757 + g 87 -13.7 -2.98942 | gap 1, opp_overlap 2037726 CCCCTCTCCAAGAGC TCTGCCA-GCGTTG AAA CAGCGCTTGGCAGA TATATCTCCCCAACT panB 2038167 - 2038955 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase PAE3411 2040014 - 2039154 - | sugar transport permease protein TERM 1872 2039202 - 2039218 + g 93 -8.7 -4.91109 | AAGCCATTTAGGCGC CAGGGCT TTG AGCCTTG TTTTTCTCATCAACA TERM 1873 2039965 - 2039975 + g 77 -8.2 -4.09685 | GTGGCGAGCAGTATT GGCG TTG CGCC TTTTAAAGCCTCGAG PAE3412 2040967 - 2040005 - | ribose ABC transporter, permease protein PAE3413 2042358 - 2040964 - | ribose ABC transport system ATP-binding protein TERM 1874 2041481 - 2041491 + g 93 -8.2 -5.00616 | overlap 2041477 TTTATAATAATCCGG CCCC CCT GGGG TTTTTTAAAACCAGA TERM 1875 2042144 - 2042118 - G 77 -6.4 -4.62772 | opp_overlap 2042126, overlap 2042119 GTGAAATTAAAGAAA TGCCCAGCCTCG CCG CGTGACTAGGCG AGTTTATAGAAGTCT TERM 1876 2042143 - 2042119 - G 72 -9.9 -3.36578 | opp_overlap 2042126, overlap 2042118 TGAAATTAAAGAAAT GCCCAGCCTCG CCG CGTGACTAGGC GAGTTTATAGAAGTC PAE3414 2043655 - 2042360 - | hypothetical protein TERM 1877 2043382 - 2043412 + g 74 -11.2 -3.21416 | ACTTCTGAGGATCTG GGCAGAGGGCACTT TCT AAGTATCTTCTGCC TTGGTCGTGGGCGTG PAE3416 2045189 - 2043807 - | phosphoenolpyruvate carboxylase TERM 1878 2043951 - 2043961 + g 90 -6.8 -5.02476 | overlap 2043959 GTCCTTAACTATCTC CCCT CCT AGGG TTTTTTCAGCCCTCT TERM 1879 2044922 - 2044904 - G 77 -8.8 -4.07687 | AGCTGTTGGCCAAAA CTGCCGCC TCA AGCGACAG CATGCTGCGTTCAAA TERM 1880 2045012 - 2044980 - G 88 -8.9 -4.72272 | overlap 2044981 TGGCGTTATGAAAAA CCGCTCGCCCAGGGG AAG CCCCAGCGCCAGCGC CTTAGAGGCCACGTC TERM 1881 2045011 - 2044981 - G 86 -12.4 -3.43042 | overlap 2044980 GGCGTTATGAAAAAC CGCTCGCCCAGGGG AAG CCCCAGCGCCAGCG CCTTAGAGGCCACGT PAE3418 2046172 - 2045228 - | hypothetical protein TERM 1882 2045534 - 2045554 + g 72 -6 -4.3953 | overlap 2045524 GACCTCATCGCCGTT GCCCGTGG GAATG CCGAGGGC TTTGTTGTACTTAGC TERM 1883 2046109 - 2046081 - G 100 -14.6 -4.61747 | overlap 2046082 GTAATAAGTACAAAA TCCACAGGGCCT GTGAG AGGCCCTGTGGG ATCTACCACAAACCT TERM 1884 2046108 - 2046082 - G 100 -18.1 -3.35963 | overlap 2046081 TAATAAGTACAAAAT CCACAGGGCCT GTGAG AGGCCCTGTGG GATCTACCACAAACC PAE3419 2046379 - 2046236 - | paREP2b TERM 1885 2046447 - 2046435 - R 71 -3.4 -4.8667 | GAGAGCGGATAAAAA TAGC GCATA GCTA TATAGACAACAGGAG PAE3421 2048115 - 2046661 - | thiamine biosynthesis protein ThiI TERM 1886 2046932 - 2046915 - G 84 -10.5 -3.8062 | TAAGGTCTACAATAA CAGCGCC TTCA GGCGCCG AGTCTATCTCAATGT PAE3422 2049587 - 2048133 - | hypothetical protein PAE3424 2050011 - 2050607 + | hypothetical protein TERM 1887 2050867 - 2050877 + T 70 -2.4 -4.98672 | opp_overlap 2050850 CTCTGGCGGAGGCGG AGCC CGA GGCC TTTTATATTTTTGCC PAE3427 2053039 - 2051210 - | aldehyde ferredoxin oxidoreductase (aor) PAE3428 2053132 - 2054505 + | hypothetical protein PAE3429 2054507 - 2055958 + | glycogen synthase, putative PAE3430 2055988 - 2057211 + | glucose-1-phosphate adenylyltransferase PAE3431 2058000 - 2057188 - | hypothetical protein PAE3432 2058144 - 2058001 - | hypothetical protein PAE3434 2058328 - 2058230 - | paREP2b PAE3435 2059778 - 2058399 - | preprotein translocase subunit SecY rpl15p 2060245 - 2059775 - | 50S ribosomal protein L15P PAE3437 2061171 - 2060281 - | glucokinase (ROK family protein), conjectural TERM 1888 2061414 - 2061402 - g 70 -6.3 -4.2354 | overlap 2061399 CAAAGCCTAAAAGAA TACAC ATT GTGTA TATCCCTGTTAAAAT TERM 1889 2061803 - 2061780 - g 70 -3.7 -4.68994 | opp_overlap 2061780, overlap 2061782 2061793 2061794 ACGAGTATTCAAAAA TAGCGGGGA GAAACG CCCCCGCCG TGTTCACCTCAAAGC TERM 1890 2061801 - 2061782 - g 74 -8.5 -3.95883 | opp_overlap 2061780, overlap 2061780 2061793 2061794 GAGTATTCAAAAATA GCGGGGA GAAACG CCCCCGC CGTGTTCACCTCAAA PAE3438 2061272 - 2062555 + | glutamate dehydrogenase PAE3440 2062654 - 2062538 - | hypothetical protein PAE3441 2063100 - 2062651 - | hypothetical protein PAE3442 2064535 - 2063246 - | glutamine synthetase PAE3443 2064862 - 2066601 + | glutamate synthase subunit, conjectural TERM 1891 2067298 - 2067278 - g 85 -6.9 -4.7373 | CGATTTGACGAAAAA GCCAATTTT AGT AAAAGTGGC TGCGGTCAATAAAAT TERM 1892 2068312 - 2068292 - g 81 -8.3 -4.3739 | overlap 2068296 GATGGGCGGAGAAAA GCCACTG GAGGCGG CAGTGGC CAGGCTCCATAGAAA TERM 1893 2068379 - 2068365 - g 75 -11.4 -3.08934 | CGAGAGACTTTAATA GTCGCC GTA GGCGAC CTATACAACGGAGCC TERM 1894 2068436 - 2068447 + G 70 -7.2 -4.10007 | overlap 2068419 GGCCGATTTAGTGGC GCCG TTAT CGGC TTTTCAACAAGTTGT PAE3444 2066598 - 2068667 + | glutamate synthase subunit, conjectural PAE3445 2069006 - 2068641 - | hypothetical protein TERM 1895 2068756 - 2068786 + g 78 -9 -3.99013 | overlap 2068757 CCCCCTTCTAGCTCA TCTACGCATTGGAG GAT CTCCAATGGGTGGC TTTCTGAGATTTTTA TERM 1896 2068757 - 2068785 + g 79 -12.5 -2.98323 | overlap 2068756 CCCCTTCTAGCTCAT CTACGCATTGGAG GAT CTCCAATGGGTGG CTTTCTGAGATTTTT PAE3447 2070160 - 2069006 - | aminotransferase, class-V PAE3450 2070462 - 2070160 - | hypothetical protein PAE3449a 2070962 - 2070642 - | hypothetical protein PAE3452 2071219 - 2071010 - | hypothetical protein TERM 1897 2071107 - 2071129 + g 85 -11.4 -3.57144 | TACACGGCCTTTTTA TACGCCTTTT CCC AAGAGGCGTA TTTACCGATGAGCGC PAE3453 2072099 - 2071305 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 1898 2072481 - 2072503 + G 70 -4 -4.70659 | opp_overlap 2072480 2072479 TTGAGGAGAAATACG CCATGTTGGC CGT GCCAGGAGGG TTTTTCGATATCAAC TERM 1899 2072774 - 2072762 - g 81 -4.9 -5.09173 | GAAGATCTCAAAAAA GTATT ACA AATAC ACTTAGAGCTCATAA TERM 1900 2073676 - 2073690 + G 72 -7.8 -3.96148 | GTTGTTAATAGCCGA GGCTAG TGA CTGGCC TTTCTGGTACGGCGG TERM 1901 2073927 - 2073938 + G 77 -7.2 -4.45083 | overlap 2073924 2073932 2073934 TATGGGCAGAGGGCG CGCC ATGC GGCG TTTTGTACATATCAA TERM 1902 2074130 - 2074148 + G 72 -8.1 -3.9444 | gap 1 CTGAGCTTCATTGGG GCCAGGCC AGGA GGCC-GGC TTTACTTGGAGTTTA TERM 1903 2074299 - 2074282 - g 70 -4.1 -4.66953 | opp_overlap 2074282 TCAATATCCCAAAAA CCCAGTT TTTA AACCAGG GGTGTTTGATCTCAC TERM 1904 2074373 - 2074404 + G 76 -4.2 -4.87893 | gap 1, opp_overlap 2074384, overlap 2074391 TTTAAAGTCAGGGAG CTGG-GGGACAACCC ATG GGGCGGGCCCGCCGG TTTTTCCTTACAGTT PAE3454 2072150 - 2075149 + | pullulanase PAE3455 2075181 - 2076455 + | maltose ABC transporter, maltose binding protein TERM 1905 2076629 - 2076606 - g 72 -5.2 -4.45544 | opp_overlap 2076620, overlap 2076609 CCTGAGGAATTAAAA CAAGCCAGGC CGCC GCCCGACTTC ACGGGGCTTTCCAAT TERM 1906 2076626 - 2076609 - g 75 -6.9 -4.34008 | opp_overlap 2076620, overlap 2076606 GAGGAATTAAAACAA GCCAGGC CGCC GCCCGAC TTCACGGGGCTTTCC PAE3456 2076456 - 2077379 + | maltose ABC transporter, permease protein PAE3457 2077369 - 2078175 + | maltose ABC transporter, permease protein PAE3458 2078345 - 2078172 - | hypothetical protein PAE3460 2078814 - 2078386 - | hypothetical protein PAE3461 2079882 - 2078839 - | heat shock protein, htpX homolog, conjectural PAE3464 2080434 - 2080739 + | hypothetical protein TERM 1907 2080928 - 2080964 + G 84 -13.8 -2.53015 | gap 1 GCTCTACAGTGGATG GATACGCCGTA-GTGGC CGAG GCCACTTACGGCGCGTC TGAGTTAACGCCTGT PAE3465 2080744 - 2082663 + | molybdenum cofactor biosynthesis protein (moaA) PAE3466 2083908 - 2082664 - | molybdenum cofactor biosynthesis protein (moaA) TERM 1908 2083564 - 2083575 + gF 71 -7.2 -4.07568 | opp_overlap 2083556 CTCATAAGGCACTAC GGCG TCAG CGCC TTTTGGCAGAGGGGC PAE3467 2083838 - 2084974 + | hypothetical protein PAE3468 2085604 - 2084945 - | hypothetical protein TERM 1909 2085124 - 2085141 + g 75 -5.5 -4.70659 | opp_overlap 2085124 ACGGAAACTCCAAAA CGGCG AGGTTAAG CGCCG TTTTTACATATCGCA PAE3469 2085861 - 2085604 - | AsnC family transcriptional regulator PAE3470 2086191 - 2085892 - | hypothetical protein TERM 1910 2085928 - 2085954 + g 75 -4.5 -4.7629 | gap 1, opp_overlap 2085928, overlap 2085935 ATATCTCTTAATAAC CACAGCTGTTGA TAAA TCAACT-CTGTG TTTTTCAGTTAGTCC PAE3471 2086925 - 2086419 - | AsnC family transcriptional regulator TERM 1911 2087492 - 2087471 - g 86 -3.7 -5.40474 | gap 1 ACGCTGGTAAAAAAA GCCGCCGA GCTAGAT TCGG-GGC AGTTCTTAAAAGAGA PAE3472 2087000 - 2087665 + | 30S ribosomal protein S3Ae PAE3473 2088189 - 2087662 - | putative RNA-processing protein TERM 1912 2088492 - 2088463 - g 83 -12.9 -3.08996 | opp_overlap 2088462 2088461 CAGTCCGATTTAAGA GGAGATCTCCCTA TATA TTGGGAGATCCCC GATTTAGAAATCTGA PAE3474 2088234 - 2089034 + | hypothetical protein PAE3475 2089550 - 2089005 - | indolepyruvate oxidoreductase subunit B PAE3477 2090707 - 2089535 - | indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift TERM 1913 2089821 - 2089833 + g 72 -6.9 -4.17089 | opp_overlap 2089800 CGGGACACAACTACC GCGGG CCT TCCGC TTTTCACAATTTCAA PAE3478 2091315 - 2090743 - | indolepyruvate ferredoxin oxidoreductase alpha subunit part 1, authentic frameshift PAE3480 2091399 - 2091668 + | transcription associated protein, conjectural TERM 1914 2091821 - 2091805 - g 73 -9.4 -3.6682 | opp_overlap 2091805 GGTTAGGTATCTAAA GGCCGA ACTAG TCGGCC TTTTAGAAACAGTGG TERM 1915 2091805 - 2091821 + G 81 -9.4 -4.08216 | opp_overlap 2091805 GGTTAGGTATCTAAA GGCCGA ACTAG TCGGCC TTTTAGAAACAGTGG TERM 1916 2091922 - 2091895 - g 78 -11.2 -3.50447 | opp_overlap 2091888 2091913, overlap 2091896 GGAATGGGGAGACAA GGCGGTGCCGAT TATC ATCGGCGCCGCT GAGACGCTGTCTATT TERM 1917 2091921 - 2091896 - g 90 -14.7 -2.69947 | opp_overlap 2091888 2091913, overlap 2091895 GAATGGGGAGACAAG GCGGTGCCGAT TATC ATCGGCGCCGC TGAGACGCTGTCTAT TERM 1918 2091973 - 2091944 - g 100 -12.1 -5.14563 | CTGTCTATTAAAAAA GGGATGGGGGAAA TCGA CTTCCCCCGCCCC CTCAGCCACGACCTC PAE3481 2091788 - 2092249 + | hypothetical protein PAE3482 2092475 - 2092236 - | hypothetical protein PAE3484 2093499 - 2092456 - | hypothetical protein rps15p 2093983 - 2093528 - | 30S ribosomal protein S15P PAE3486 2093922 - 2094782 + | hypothetical protein TERM 1919 2095012 - 2095041 + G 72 -5.7 -4.54727 | gap 1 TCACGATATTGCAAA GAGCATGGGGGC TGTATAC GCCCCTG-GCTC TTTTGATTTAGACGA PAE3487 2094779 - 2095657 + | putative deoxyhypusine synthase PAE3488 2095659 - 2096621 + | UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase PAE3489 2096639 - 2096833 + | hypothetical protein TERM 1920 2096909 - 2096891 - f 78 -6.6 -4.62471 | overlap 2096892 TCTAAGGCTTAAAAA GGCCAAGG AAG CCCTGGCG GAATTAGAAACTAAG TERM 1921 2096908 - 2096892 - f 73 -10.1 -3.37 | overlap 2096891 CTAAGGCTTAAAAAG GCCAAGG AAG CCCTGGC GGAATTAGAAACTAA TERM 1922 2097304 - 2097320 + G 73 -3.6 -4.82901 | overlap 2097305 GAATAAGCGGGACCT CGCCGA AGAGC TCGGCC TTTTTGTAGAAGGCG PAE3492 2096951 - 2097436 + | hypothetical protein TERM 1923 2097608 - 2097593 - g 85 -8.2 -4.58466 | GGGATAAGTACAAAA GGGGAC AGGC GCCCCC GGTAGGCGAAGTCTC TERM 1924 2097934 - 2097974 + G 72 -4.6 -4.64657 | gap 1 CTCTCTTTAATCCCC CTAGCC-CCGTCGCCTCCT GGGC GGGAGCTCGCGGCGGCTGG TTTTTACGCCTTTGA PAE3494 2097433 - 2098290 + | hypothetical protein PAE3495 2098945 - 2098259 - | hypothetical protein PAE3497 2099520 - 2099116 - | hypothetical protein TERM 1925 2099207 - 2099218 + g 70 -5.8 -4.28067 | GCTAAAATCAGTTGG GCCA ATAT TGGC TTTCTATCTTCTTGC PAE3498 2099567 - 2100298 + | hypothetical protein PAE3499 2100609 - 2100274 - | hypothetical protein PAE3500 2101419 - 2100670 - | NAD-dependent deacetylase PAE3501a 2101543 - 2101487 - | hypothetical protein TERM 1926 2101791 - 2101839 + H 79 -11.7 -3.1489 | opp_overlap 2101796 2101798 2101820, overlap 2101777 2101787 2101796 ACGGCGGTAGTTTAA CAAAACGGCCCGCTGTTTAGTTA ATT TAACCAAACCGCGGGCAGTGTGG TTGCGTAATATTTCC TERM 1927 2101796 - 2101834 + H 87 -14.6 -2.92668 | opp_overlap 2101796 2101798 2101820, overlap 2101777 2101787 2101791 GGTAGTTTAACAAAA CGGCCCGCTGTTTAGTTA ATT TAACCAAACCGCGGGCAG TGTGGTTGCGTAATA TERM 1928 2101834 - 2101796 - H 100 -16.8 -4.65916 | opp_overlap 2101777 2101787 2101796 2101791, overlap 2101798 2101820 GGTAGTTTAACAAAA CGGCCCGCTGTTTAGTTA ATT TAACCAAACCGCGGGCAG TGTGGTTGCGTAATA TERM 1929 2101832 - 2101798 - H 100 -18 -2.62958 | opp_overlap 2101777 2101787 2101796 2101791, overlap 2101796 2101820 TAGTTTAACAAAACG GCCCGCTGTTTAGTTA ATT TAACCAAACCGCGGGC AGTGTGGTTGCGTAA TERM 1930 2101842 - 2101856 + H 73 -4.2 -4.88295 | GCGGGCAGTGTGGTT GCGTAA TAT TTCCGC TTTTTCCATTTCTTT PAE3502 2102079 - 2102543 + | hypothetical protein PAE3503 2102893 - 2103480 + | hypothetical protein PAE3504 2103456 - 2103695 + | hypothetical protein PAE3506 2103787 - 2103987 + | hypothetical protein TERM 1931 2104686 - 2104670 - g 70 -4.4 -4.56597 | gap 1, overlap 2104671 2104672 2104674 GGGGTGTCTCAAAAA GTCAGCG CCGC CGCTG-C GCAGGGAATTAAAAC TERM 1932 2105840 - 2105850 + G 72 -8.2 -3.83502 | GTTTTAGTCTTGTTG GCCG CGG CGGC TTTGATATACGCCTC PAE3507 2104211 - 2105875 + | hypothetical protein PAE3509 2106161 - 2105865 - | hypothetical protein TERM 1933 2105980 - 2105953 - G 71 -2.6 -5.00616 | overlap 2105957 2105970 GCCGCGGTGAAAAAA GCAACTGGGATT AGAT ACTCCCAGTAGG GGGCGTACATATATA TERM 1934 2106380 - 2106353 - g 73 -4.2 -4.74132 | opp_overlap 2106342, overlap 2106354 AGAGGCCATTAAAAA GGCGTATTCT ATAGCGCA AGAATACGCG AGGAAAATTGGAGGA PAE3512 2106303 - 2106815 + | hypothetical protein TERM 1935 2107057 - 2107075 + G 72 -7.4 -3.86202 | overlap 2107048 2107059 AATTTCGAGGCTAGT GCGCTCTT TCC AAGAGCTC TTTACTCTGCTAGAC PAE3513 2106812 - 2107567 + | resolvase, conjectural PAE3514 2108187 - 2107642 - | xanthine-guanine phosphoribosyltransferase, conjectural PAE3515 2108954 - 2108235 - | hypothetical protein PAE3516 2109192 - 2108947 - | hypothetical protein TERM 1936 2110181 - 2110204 + G 83 -6 -4.90266 | gap 1, overlap 2110183 AGAAAATAGCGCTTT TCGCCCACGTG CCT CA-GTGGGCTA TTTTTAATTCATACG TERM 1937 2110183 - 2110202 + G 77 -8.6 -4.07008 | gap 1, overlap 2110181 AAAATAGCGCTTTTC GCCCACGTG CCT CA-GTGGGC TATTTTTAATTCATA TERM 1938 2110308 - 2110335 + G 78 -5.5 -4.83615 | CCGCCTTCCGTCGCG CTCCCCCGAGT ATAGAG ACTGGGAGGAG TTTTTATCCAAGCTG TERM 1939 2111034 - 2111056 + G 81 -6.2 -4.86033 | overlap 2111052 CCCGGAGTTTAAGTC CAGGCCCG CCAAGCC CCGGCCTG TTTTTCTCGGGCTTT PAE3518 2109508 - 2111100 + | CTP synthetase PAE3520 2111455 - 2111090 - | NADH dehydrogenase subunit A TERM 1940 2111680 - 2111694 + G 81 -12.8 -3.24488 | overlap 2111682 2111687 TTGACGGCGTTTTAT CGGCGG CCG CCGCCG CTTTATTTGGCGGCG TERM 1941 2111682 - 2111695 + G 86 -9.5 -4.41616 | overlap 2111680 2111687 GACGGCGTTTTATCG GCGGC CGCC GCCGC TTTATTTGGCGGCGT TERM 1942 2111974 - 2111986 + G 70 -6.2 -4.15044 | CTGTCCGCGCGCTAG GCCC GGGAG GGGC TTTGTTCACAAGAGG PAE3521 2111502 - 2112275 + | hypothetical protein TERM 1943 2112498 - 2112510 + G 70 -4.1 -4.66833 | opp_overlap 2112489, overlap 2112489 AGTTAACGGCTTCCC TGCAG ACG CTGTA TTTTTGGCGTTGAAG PAE3523 2112298 - 2113047 + | surE stationary-phase survival protein PAE3524 2113177 - 2113521 + | hypothetical protein PAE3526 2113530 - 2114735 + | hypothetical protein PAE3527 2114757 - 2115638 + | hypothetical protein PAE3530 2116950 - 2116048 - | paREP12, internal deletion TERM 1944 2116234 - 2116194 - G 100 -17 -2.78935 | gap 1, opp_overlap 2116195 ACACCGCGGAGTACA GCCTGTCCTCACGGTACGG CACT CCGTACCATGAGGCCA-GC TCTCTAATCCGCCTC TERM 1945 2116195 - 2116234 + g 90 -15 -2.94416 | opp_overlap 2116194 CACCGCGGAGTACAG CCTGTCCTCACGGTACGG CACT CCGTACCATGAGGCCAGC TCTCTAATCCGCCTC PAE3532 2118300 - 2117092 - | hypothetical protein PAE3533 2119985 - 2118384 - | hypothetical protein PAE3535 2120825 - 2120034 - | hypothetical protein PAE3538 2121861 - 2121046 - | hypothetical protein PAE3540 2122689 - 2121970 - | hypothetical protein TERM 1946 2122761 - 2122802 + r 100 -9.5 -4.77157 | gap 1, opp_overlap 2122786, overlap 2122763 2122799 CTGAGTCGCCAGTTT TCCAGCGGACAGTTCCTGAA AAA TTCAGGAACTC-CCGCCGAA TTTTTCGTCGATTCA TERM 1947 2122763 - 2122800 + r 76 -12.1 -2.6662 | gap 1, opp_overlap 2122786, overlap 2122761 2122799 GAGTCGCCAGTTTTC CAGCGGACAGTTCCTGAA AAA TTCAGGAACTC-CCGCCG AATTTTTCGTCGATT PAE3541 2123009 - 2122854 - | hypothetical protein PAE3542 2123333 - 2123773 + | hypothetical protein TERM 1948 2125021 - 2125008 - g 75 -4.5 -4.75308 | AGGAAGAGGGAAAAA CAGCC GCAA AGCTG ATAGCGAAGATAAAG TERM 1949 2125047 - 2125036 - g 70 -5.8 -4.22678 | overlap 2125037 GATAGCGAAGATAAA GCCT GCGA AGGC AGAGGACTACGAGCT PAE3544 2124131 - 2125225 + | paREP2b TERM 1950 2125206 - 2125227 + F 70 -8.8 -3.44146 | opp_overlap 2125213 ACTTGACCAGGTACG GCCTAAAG CCCATA CTTTAGGC TTGGTTGTCGACGCA TERM 1951 2127010 - 2127026 + G 81 -5 -5.08824 | overlap 2126971 2126970 GACCAAGTACAAGGG CGTGGG TTTGT CCCCCG TTTTTTCCCTCCCGG PAE3545 2125232 - 2127118 + | paREP2b TERM 1952 2127535 - 2127509 - g 77 -5.8 -4.60487 | overlap 2127499 2127497 2127496 2127494 2127510 TATGAGCCCGAAAAA GTTCTCGAGCTC CTC GAGGCCGAGAAA ATTCAACAATAGGAT PAE3546 2127179 - 2127547 + | hypothetical protein PAE3547 2127576 - 2128466 + | heat shock protein, htpX homolog, conjectural PAE3548 2128450 - 2128833 + | hypothetical protein TERM 1953 2128841 - 2128822 - T 73 -10 -3.32022 | gap 1, overlap 2128807 CGGCCTAGAGAGCAA CGCCGCCGT TAG ACG-CGGCG AAATATCAGCGCTAT PAE3550 2129365 - 2128919 - | hypothetical protein PAE3553 2129551 - 2130276 + | hypothetical protein PAE3554 2131341 - 2130268 - | mannose-1-phosphate guanyltransferase TERM 1954 2130649 - 2130661 + g 73 -9.1 -3.68351 | ACACCTCTCCAACGC GGCGA AAT TCGCC TTTAAATAATCCCCG PAE3556 2132044 - 2131349 - | hypothetical protein PAE3558 2132119 - 2132325 + | hypothetical protein PAE3559 2132355 - 2132807 + | HIT family protein PAE3560 2132804 - 2133847 + | hypothetical protein PAE3561 2133853 - 2134185 + | hypothetical protein TERM 1955 2134185 - 2134212 + F 84 -7.6 -4.78572 | overlap 2134186 ATTGGCCATTTACTA GCGAGGGGCTGT TCAC ACAGCCTCCGGC TTTTATTGATTGCGC TERM 1956 2134617 - 2134605 - g 70 -4.1 -4.71426 | GCTTTATTAACAAAA TCCAC ATA ATGGA CGACCCTAATATTTT PAE3562 2134271 - 2134846 + | DNA-directed RNA polymerase subunit E' PAE3563 2134843 - 2135064 + | DNA-directed RNA polymerase subunit E'' (rpoE2) PAE3564 2135426 - 2135037 - | hypothetical protein TERM 1957 2135201 - 2135187 - G 72 -10 -3.34013 | opp_overlap 2135179 CACTTCTCTAATCAA GGCTCT GAG AGAGCC CTTGGCCAGTTTGTC TERM 1958 2135343 - 2135364 + g 90 -11.6 -3.86822 | opp_overlap 2135329 2135328 2135338, overlap 2135361 CGCCTCAATAGCCGA GGCCGTAG TTGCGC CTACGGCC TTTCTAAAGGACTTG TERM 1959 2135520 - 2135497 - g 88 -8.2 -4.59109 | gap 1, overlap 2135500 GAGAGTTCTGAAAAA CACCGGCTTCC TCC GGAAG-CAGTG CCCCCTGTGTAAATC TERM 1960 2137379 - 2137367 - g 73 -9.1 -3.61178 | GTTACTCACTTCAAA CTGCC CAC GGCAG AGGAGGTGGCGGAGA TERM 1961 2137471 - 2137449 - g 76 -7.6 -4.16943 | overlap 2137450 2137465 CGGTACACGTTAAAA TTCTGCCGCG TAA CGAGGCAGAG GCTAAATACGGCTTT TERM 1962 2137470 - 2137450 - g 72 -11.1 -3.09844 | overlap 2137449 2137465 GGTACACGTTAAAAT TCTGCCGCG TAA CGAGGCAGA GGCTAAATACGGCTT TERM 1963 2137637 - 2137659 + G 77 -3.4 -5.07652 | overlap 2137636 ATACAAAAAGTTGAG CGCATAGC CGACGGC GTTGTGCG TTTTATTTTCACCAC TERM 1964 2137947 - 2137931 - g 80 -5.1 -5.0133 | GAGCTGGCTAAAAAA GTGGC GCAAATA GCCAC TGGCCGCGACAAAGA alaS 2135471 - 2138149 + | alanyl-tRNA synthetase TERM 1965 2138278 - 2138247 - g 100 -5.1 -5.50313 | overlap 2138268 2138270 GATAAAATTAAAAAA CGGCGAGGTTATT AGAATA AACAGCCCCACCG TGGCCCTGGTGAAAA nac 2138146 - 2138526 + | nascent polypeptide-associated complex protein rpl10e 2138574 - 2139116 + | 50S ribosomal protein L10e TERM 1966 2139412 - 2139392 - gT 70 -9.6 -3.0497 | AGATTATCCGCAACA CGGGGGAG GTGCT CACCCCCG AGCTAAAAGAGGCGC PAE3568 2139091 - 2139831 + | hypothetical protein PAE3569 2140803 - 2139835 - | hypothetical protein TERM 1967 2140937 - 2140927 - H 80 -6.8 -4.71776 | TAAGATTGAAGAAAA GCCT TTA AGGC GCTGAGACAGTAGGC TERM 1968 2141031 - 2141063 + G 93 -8.4 -5.00884 | opp_overlap 2141048, overlap 2141016 CGCCGGCCCGTTGCC GCCGGGGTTTACAG AGACG TTGTTAACCACGGC TTTTTTCAGCGGCGT PAE3570 2140957 - 2141676 + | sulfate ABC transporter, permease protein, putative PAE3571 2141661 - 2142320 + | ABC transporter ATP-binding protein, putative PAE3573 2142905 - 2142315 - | hypothetical protein PAE3574 2142978 - 2143799 + | hypothetical protein TERM 1969 2144188 - 2144174 - g 75 -5.7 -4.63218 | TGTTTTGGAATAAAA GAGCA CATCC TGCTC CCCGGGGTGAAATAC rpl5p 2143835 - 2144374 + | 50S ribosomal protein L5P TERM 1970 2144939 - 2144955 + G 81 -12.3 -3.16742 | GCGGTTGTCTCACTG GGCGTAG CTC CTACGCC TTAATAAACGTTGAA PAE3577 2144497 - 2145003 + | hypothetical protein TERM 1971 2145619 - 2145602 - g 74 -2.7 -5.00616 | gap 1 CGTGTTGTTAAAAAA TGC-CAAG AGG CCTGTGCA ATACTTAGAGGCAGT TERM 1972 2146043 - 2146025 - g 91 -9.6 -4.63172 | opp_overlap 2146025 CAGCAAATTACAAAA GGCGCTTT TAA AAAACGCC TTGTCTCTGGCCAGT PAE3578 2145000 - 2146244 + | sun family protein PAE3580 2147373 - 2146234 - | hypothetical protein TERM 1973 2146417 - 2146434 + g 81 -4.8 -5.05782 | CGCCTCTATAGTGAC GCCCTT GAGGAG GAGGGC TTTTTTCAAATCGCT PAE3581 2148743 - 2147397 - | hypothetical protein TERM 1974 2147425 - 2147441 + g 75 -11.5 -3.05844 | overlap 2147440 AGCCTCTCCACGCCG GGCGGCG CGG TGCCGCC TCTTGACATAAGCGG TERM 1975 2147472 - 2147453 - G 78 -10.8 -3.48276 | opp_overlap 2147440 2147452 2147451 2147450 CGCCTCTTGACATAA GCGGTATT TTAG AATACCGC GATATTTCCATAACG PAE3582 2149012 - 2148740 - | hypothetical protein TERM 1976 2149059 - 2149044 - H 77 -10.4 -3.42437 | opp_overlap 2149043 2149042 2149040, overlap 2149042 2149040 TAATTTTAAAACATA GGGGAC AGCT GTCCCC CGTCTTGTGATTAAT TERM 1977 2149534 - 2149520 - g 71 -9.2 -3.48395 | ATCTTTCCGACAGAA GCCCCG AGG CGGAGC TGGTGCGGGGGTTGA PAE3584 2149129 - 2150157 + | citrate synthase part 1, authentic frameshift PAE3585 2150161 - 2150316 + | citrate synthase part 2, authentic frameshift PAE3586 2150355 - 2151125 + | electron transfer flavoprotein beta subunit (etfB) TERM 1978 2151285 - 2151261 - g 77 -10 -3.64755 | gap 1 AGATATTCGTAACAA GCGTC-GACGC CAGA GCGCCAGACGC CGTGGCTGAGGCTGT TERM 1979 2151930 - 2151963 + G 83 -10.3 -4.06892 | opp_overlap 2151940 ACCCTTCGGCGCCGA TATTCCAAAACGCCG ACTA CGGCGTTGTGGAGGA TTTATATAAAATTGT TERM 1980 2151953 - 2151940 - g 82 -9.5 -4.16943 | opp_overlap 2151930 GCCGATATTCCAAAA CGCCG ACTA CGGCG TTGTGGAGGATTTAT PAE3587 2151122 - 2152021 + | electron transfer flavoprotein alpha subunit (etfA) PAE3588 2152405 - 2151986 - | hypothetical protein TERM 1981 2152608 - 2152636 + H 78 -11.8 -3.06492 | opp_overlap 2152615 GAGGTATTGGGATCT GTACAGAGAGGT AAACC GCCTCTCTGTGC TGTTGAGGTCCCTGG PAE3592 2152872 - 2153642 + | acetyl-coenzyme A synthetase, degenerate TERM 1982 2153865 - 2153899 + T 70 -9.9 -3.07962 | opp_overlap 2153863 2153864 CGTGATTAAAATAGC TGGCCACCGCCTCTC CACTA GGGAGGTGGAGGACA TATTAACGTCTCACC PAE3595 2154813 - 2154202 - | proteasome, beta subunit PAE3596 2154878 - 2155924 + | RNA 3'-terminal-phosphate cyclase ubiA 2156823 - 2155912 - | prenyltransferase TERM 1983 2156670 - 2156652 - G 83 -5.2 -5.1615 | CCAAGAGGGAAAAAA GACGGC TGTCAAC GCCGCC CCCGCCGTAAATATA PAE3598 2157453 - 2156836 - | nitrite reductase (cytochrome C), conjectural TERM 1984 2157024 - 2157040 + g 73 -3.6 -4.84761 | overlap 2157026 TGTCCAAATTGGCGG CGGGGT TTGTT AACCCG TTTTTCTCAAAATAT TERM 1985 2157567 - 2157555 - gH 73 -4.1 -4.85782 | TGGCCGAAAAACAAA CTTCC TCC AGAAG AGATTTGTTAAAAGC TERM 1986 2158660 - 2158648 - gH 78 -6.2 -4.56597 | overlap 2158650 TCCCTGCGGCAAAAA GCCG CACCC CGGC CCGGGCACGCTAGTC TERM 1987 2158782 - 2158800 + GH 93 -11.6 -3.69068 | opp_overlap 2158769, overlap 2158780 ACCCGAGGGAGTTCC CCGCCGAC ACT GGCGGCGG TCTTTATTCAACTCC PAE3600 2157539 - 2159176 + | nitrite reductase (cytochrome d1), conjectural TERM 1988 2159224 - 2159234 + GT 79 -2.4 -5.19212 | GATCCAGAGCTCATA ACCC TCA GGGG TTTTTTCCTCCTCCT TERM 1989 2159428 - 2159418 - gT 71 -2.4 -5.00884 | opp_overlap 2159418 AGTTGTTTTAAAAAA CGGG GAC CCGG TGCTCTACGGCAGGG TERM 1990 2159548 - 2159566 + GT 77 -5.8 -4.63218 | opp_overlap 2159541, overlap 2159549 TATAAAATCCCCATC GGGCGCGG CGG CCGCCCCA TTTTGTTAAAAACCG TERM 1991 2159549 - 2159565 + GT 70 -9.3 -3.3761 | opp_overlap 2159541, overlap 2159548 ATAAAATCCCCATCG GGCGCGG CGG CCGCCCC ATTTTGTTAAAAACC PAE3601 2159149 - 2159733 + | uroporphyrin-III C-methyltransferase PAE3602 2160857 - 2159730 - | hypothetical protein TERM 1992 2159821 - 2159867 + g 77 -12.1 -2.71712 | opp_overlap 2159813, overlap 2159820 CTTACAACGGCGAGG GACGGCGTGTAGGCGTAGGCG TAGCC CGCCCTTGCCAACATGCCGAC GTTTAACAGGAGAAA TERM 1993 2160049 - 2160003 - G 71 -2.1 -4.94262 | gap 1, overlap 2160042 2160043 TATATTAAAAATAAA CCCCAAGGCTAAGGCGTG-CGT CGCG ACGTCCCGCCACAAGGTCGGGG CGCCGAGGAAAAGTA TERM 1994 2160175 - 2160202 + g 76 -12.7 -2.61681 | gap 1, overlap 2160174 AGTATTGACGCCGTC CCGCTGGC-CGC CAGGA GCGCGCCGGCGG CTTCTACAATTCCAA TERM 1995 2160271 - 2160255 - G 70 -6.5 -4.24745 | GACGAGCAATAGAAA GGCCAAG ACG CCTAGCC GCTCCCTCGCGGGCC TERM 1996 2160929 - 2160917 - H 80 -6.2 -4.89393 | TAAAGGGCATAAAAA CCGC GGGAT GCGG AATTGGCGTAATGCC TERM 1997 2163226 - 2163241 + G 70 -6 -4.25104 | GGCCATCTTCGCCCC CGACGG CACG CCGGCG TTTTGGTCAAGGCAG PAE3603 2161205 - 2163370 + | nitric oxide reductase, cytochrome b subunit TERM 1998 2163457 - 2163440 - f 81 -3.5 -5.2894 | opp_overlap 2163440 AAATAGAAAACAAAA GATATTC AATG AAATATC TTGTTCTATATTTAA PAE3604 2163448 - 2163912 + | hypothetical protein PAE3605 2164227 - 2163904 - | hypothetical protein PAE3607 2164455 - 2165033 + | hypothetical protein TERM 1999 2165620 - 2165593 - g 73 -11.3 -2.60212 | gap 1, overlap 2165592 GGAGCACTCCACAAG GGAGTACCGGGG GCTCG CCCCGGC-CTCC ACGCCGTTGCAACTC TERM 2000 2166252 - 2166230 - g 71 -9.1 -3.53444 | gap 1, opp_overlap 2166239 2166245 CTATTTGCCCGCAAA GCCGGCGTCC AGCT GG-CGCCAGC CTCAGCCGCTTTAAA PAE3608 2165030 - 2166370 + | hypothetical protein PAE3609 2166797 - 2166357 - | hypothetical protein PAE3610 2167392 - 2166844 - | nitrate reductase delta subunit (narJ) PAE3611 2167486 - 2171370 + | nitrate reductase alpha subunit (narG) TERM 2001 2172320 - 2172278 - g 70 -4.2 -4.7254 | gap 2, overlap 2172264 AGCCGCTAGGAAAAA CGGC-ATCCCCGA-CTACTG GATCA CAGCGGCTCAGAGATCGCCG GTGTATAAAATTGTG TERM 2002 2172609 - 2172596 - g 72 -4.5 -4.64657 | gap 1, overlap 2172597 CGAAAGGGCTAAAAA CGTGGC TGA GCC-CG GCCTAGCCGACAAGG TERM 2003 2172640 - 2172624 - g 76 -12.3 -2.59564 | overlap 2172623 GGCCTAGCCGACAAG GCCAAGG CCG CCTTGGC GGAGGCCGGCCTCTC PAE3612 2171367 - 2172788 + | nitrate reductase beta subunit (narH) PAE3613 2172785 - 2173708 + | nitrate reductase subunit, conjectural PAE3614 2173709 - 2174407 + | hypothetical protein TERM 2004 2174436 - 2174426 - gf 70 -4.6 -4.56597 | CTTCGTGGTGAAAAA CGGC ATT GCCA GGGGTCCGAAGGGGG PAE3615 2174379 - 2175200 + | hypothetical protein PAE3617 2175236 - 2175946 + | hypothetical protein PAE3618 2176547 - 2175987 - | hypothetical protein PAE3619 2177122 - 2176532 - | nitrate ABC transport, ATP-binding protein, putative TERM 2005 2177368 - 2177378 + G 70 -4.6 -4.56597 | TCATTTCGTTTTTTG CCGC CCT GTGG TTTTTAAAAAAGAGG PAE3621 2177199 - 2178128 + | transport protein, putative TERM 2006 2178150 - 2178176 + GF 73 -3.7 -4.86939 | gap 1, overlap 2178153 2178154 TGATACTACTGGCCG TGGCCGCCGC AGCGATAG GCGGCG-CTA TTTTTGCCTTTCTTA PAE3623 2178125 - 2178511 + | hypothetical protein TERM 2007 2179412 - 2179427 + GF 74 -2.4 -5.0538 | overlap 2179411 2179424 CCCGCTCTTAATACC CGCAGT CTTG GCGGCG TTTTTTGGAATGGCG TERM 2008 2179447 - 2179473 + GF 77 -10 -3.64822 | opp_overlap 2179447, overlap 2179424 TTGGAATGGCGAAAA GGGCCTTTCCCC CGA GGGCAGTGGCCC TTTACATGGGGGCGT TERM 2009 2179473 - 2179447 - gf 74 -7.8 -4.14392 | opp_overlap 2179424 2179447 TTGGAATGGCGAAAA GGGCCTTTCCCC CGA GGGCAGTGGCCC TTTACATGGGGGCGT TERM 2010 2180485 - 2180471 - gf 82 -7.8 -4.56597 | overlap 2180473 CGCCTTGTTGAAAAA CAGCCC CCA GGGCTA CGTGGCGTATGTAAA TERM 2011 2180483 - 2180473 - gf 74 -8.2 -3.90048 | overlap 2180471 CCTTGTTGAAAAACA GCCC CCA GGGC TACGTGGCGTATGTA PAE3624 2178483 - 2180591 + | cytochrome C-type biogenesis protein, TERM 2012 2180646 - 2180661 + G 72 -10.4 -3.39327 | opp_overlap 2180626 2180646 2180645 TATTTGGGTCATAAG GGCCAG CCAG CTGGCC TTGTACCTCTCAGCC TERM 2013 2181117 - 2181135 + G 93 -5.8 -5.1963 | overlap 2181121 CGCCGGCTCTATCGC CGCTGCCC ACG GGGCTGGG TTTTTGTTAATTAAA PAE3625 2180581 - 2181525 + | hypothetical protein PAE3626 2182573 - 2181533 - | hypothetical protein PAE3627 2182617 - 2183396 + | hypothetical protein TERM 2014 2183458 - 2183470 + F 72 -4.7 -4.67608 | opp_overlap 2183438 2183458 TTTTTCTGAAAAAAT GGGCC GCT GGCGC TTTTATCTTCACGTA PAE3628 2183638 - 2183760 + | hypothetical protein TERM 2015 2184089 - 2184107 + T 70 -5.2 -4.39002 | overlap 2184088 GAAACCGGCGTGCTG GGAGGGGG CTT CTCTCTTC TTTTGTGGACACTTT PAE3630 2184775 - 2184155 - | hypothetical protein TERM 2016 2185080 - 2185093 + G 74 -8.1 -4.07687 | opp_overlap 2185080 CCCGAAGTTATTAAA TCCGC CAAT GCGGA TTTTCCGAAAAGGCT PAE3631 2184831 - 2185739 + | NAD dependent epimerase/dehydratase, putative PAE3632 2186796 - 2185741 - | hypothetical protein PAE3634 2187622 - 2187909 + | hypothetical protein TERM 2017 2188197 - 2188214 + G 81 -6.9 -4.67904 | AAAATAGACAAGGCC CCCCACG GCTA CGTAGGG TTTTTCGACTTGGTA PAE3635 2187939 - 2188520 + | hypothetical protein PAE3636 2189428 - 2188688 - | hypothetical protein TERM 2018 2190208 - 2190174 - g 100 -16.4 -4.59109 | overlap 2190196 2190197 GAGACTGTGCAAAAA GCGGCGGCGGAGCT GGGGAAA AGCCCCGGCGCCGC GGCTGGGACCGGAAT PAE3638 2189484 - 2190452 + | hypothetical protein TERM 2019 2190471 - 2190497 + G 70 -3.6 -4.59982 | overlap 2190472 CGGGGGAGACAGCCG CCGCAATAGCCG CCT TGGCTGTTGGGA TTTATTTAATTCTGG TERM 2020 2190665 - 2190679 + G 74 -7.8 -4.11183 | overlap 2190666 GCGATGGCCGCAGGC TGGGGA GCC TCCCCG TTGTTTGTAGTCGGC PAE3640 2190449 - 2190745 + | hypothetical protein PAE3641 2190775 - 2191695 + | hypothetical protein PAE3642 2192483 - 2191692 - | hypothetical protein PAE3643 2193355 - 2192513 - | hypothetical protein PAE3644 2194353 - 2193352 - | hypothetical protein TERM 2021 2193546 - 2193536 - G 70 -6.8 -4.07568 | TTGTTCTCGGGAAAA GAGG GCT CCTC CGCCAATACCACAGC TERM 2022 2194628 - 2194583 - g 74 -9.7 -3.55563 | opp_overlap 2194589 2194590, overlap 2194589 2194590 AGTGGAGTTTTGAAA TTAGAAGCTCCCCAAGCGGAG GCAC CGCCGCTGGAGGAGGTTTTAA TAGAGCTGTACGACA TERM 2023 2194589 - 2194622 + G 70 -6.5 -4.26344 | opp_overlap 2194583 2194589 2194590, overlap 2194590 GTTTTGAAATTAGAA GCTCCCCAAGCGGAG GCAC CGCCGCTGGAGGAGG TTTTAATAGAGCTGT TERM 2024 2194590 - 2194621 + G 70 -10 -3.15324 | opp_overlap 2194589 2194583 2194590, overlap 2194589 TTTTGAAATTAGAAG CTCCCCAAGCGGAG GCAC CGCCGCTGGAGGAG GTTTTAATAGAGCTG TERM 2025 2194621 - 2194590 - g 77 -12.2 -2.75769 | opp_overlap 2194590 2194589, overlap 2194589 2194583 TTTTGAAATTAGAAG CTCCCCAAGCGGAG GCAC CGCCGCTGGAGGAG GTTTTAATAGAGCTG TERM 2026 2195151 - 2195141 - g 85 -8.2 -4.53303 | opp_overlap 2195141 2195140 GAGGCGGAGAGAAAA GCGG CGG CCGC CTTGTTGTCGAGAAG PAE3645 2194505 - 2195452 + | aminotransferase, putative PAE3646 2196302 - 2195406 - | hypothetical protein PAE3647 2196349 - 2196990 + | RNA 2'-phosphotransferase-like protein PAE3650 2197261 - 2198082 + | hypothetical protein TERM 2027 2198500 - 2198521 + F 82 -8 -4.72272 | gap 1 CAGGCGAGCTGTTTC TCC-CGGGC CTCCA GCCCGCGGA TTTTTCCTCAAGAAA PAE3652 2198591 - 2199058 + | paREP8 TERM 2028 2199399 - 2199414 + T 93 -9 -4.82901 | opp_overlap 2199411 2199412 ATATGGCGAATCCGG GGGGTT GAAA AACCCC TTTTTCTGGAAAAAG TERM 2029 2199431 - 2199411 - T 78 -6.2 -4.56597 | opp_overlap 2199399, overlap 2199412 2199429 CGGGGGGTTGAAAAA CCCCTTTT TCTGG AAAAAGGG CCTTAAGCCCACCAG TERM 2030 2199431 - 2199412 - T 70 -9.4 -3.33744 | opp_overlap 2199399, overlap 2199411 2199429 GGGGGGTTGAAAAAC CCCTTTTT CTGG AAAAAGGG CCTTAAGCCCACCAG TERM 2031 2199441 - 2199429 - T 80 -6.9 -4.56597 | overlap 2199411 2199412 CTTTTTCTGGAAAAA GGGCC TTA AGCCC ACCAGTATTTCTCTC PAE3655 2200603 - 2199434 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 2032 2200256 - 2200288 + g 70 -6.3 -4.28111 | opp_overlap 2200247 AATATACCCGGCAAT TACGGGGCGCC AAAGTGTTAGA GGCGCCTTGTA TTTCTTCATAATCTC TERM 2033 2200835 - 2200821 - g 77 -7.1 -4.52589 | CGTTGTTAGAGAAAA CAGGC GTGAG GCCTG AGGACGTGGAGGAGT TERM 2034 2201526 - 2201549 + G 72 -10.2 -3.31144 | AAATTAGAGCGGTGG CCTTCGCCGG AGTT CCGCCGGAGG TTATGGGGATGGGGC TERM 2035 2201741 - 2201706 - g 75 -11.8 -3.09878 | opp_overlap 2201727, overlap 2201689 2201723 CGGAGTTAGTGAACA CCAGGGGAGGGGCAAT AGCC ATCGGCCACCCCCTGG GCGCCACGGGGGCGC PAE3656 2200661 - 2201869 + | acetyl-CoA acetyltransferase TERM 2036 2202490 - 2202504 + G 72 -7 -4.20516 | TACCTCACTTCTATG GCGGCC ATC GCCCGC TTTGTTGACTCCAGC PAE3657 2201905 - 2203338 + | hypothetical protein PAE3658 2203700 - 2203335 - | paREP8 PAE3660 2204001 - 2203744 - | hypothetical protein PAE3662 2204521 - 2203979 - | hypothetical protein TERM 2037 2204040 - 2204024 - G 88 -8.7 -4.59773 | GCCGAGCGTTAAAAA GACCGCT GTG AGCAGTC TAGCCACTAAGTCAA PAE3663 2205736 - 2204522 - | hypothetical protein TERM 2038 2204580 - 2204554 - G 76 -10.8 -3.31269 | overlap 2204572 CCGACACTATATTAA TTCTCCCCGCCC TAT AAGCGGGGAGGA ATGCCCCCATTAAGT TERM 2039 2204626 - 2204613 - G 76 -9.5 -3.80014 | ATAGCCACGACTAAA GCCGC TGTA GCGGC CACTAAGAGGGGGTC TERM 2040 2206250 - 2206232 - g 71 -11 -2.93382 | opp_overlap 2206233 GCCGAGATTTACATA CCGCCATA CCC TACGGCGG AGGTATCCGCTAGGG TERM 2041 2206233 - 2206273 + G 79 -12.6 -3.08813 | gap 1, opp_overlap 2206232 CCGAGATTTACATAC CGCCATACCCTACGGCGGA GGTA TCCGCTA-GGGGTGTGGCG TATATTGGACTGCCC TERM 2042 2207405 - 2207382 - g 84 -13.9 -2.64422 | opp_overlap 2207404 ACATAGTCTACACCA CGGAGCTCG GCACTA CGAGCTCCG CCCAAGGCACTTTCT PAE3665 2205818 - 2207929 + | hypothetical protein PAE3666 2208125 - 2207901 - | hypothetical protein PAE3667 2208597 - 2208265 - | hypothetical protein TERM 2043 2208349 - 2208328 - G 100 -11.5 -4.63542 | overlap 2208318 CATAACGCCGAAAAA GGCGATGGC GACA GCCAACGCC GTAGTGAAGTACCCG TERM 2044 2208564 - 2208548 - G 85 -11.5 -3.63968 | overlap 2208552 TCGGAAATTCTCAAA GCCACGG CCG CCGCGGC GGGGACGACCGCCGA TERM 2045 2209833 - 2209845 + G 77 -6.9 -4.56597 | overlap 2209817 CGCCTTGTCGGGGGT CGTCG CCG CGGCG TTTTTGGCGGGGGGA PAE3670 2208991 - 2210004 + | hypothetical protein PAE3672 2209997 - 2211091 + | pyruvate formate-lyase activating enzyme-like protein PAE3676 2212319 - 2211783 - | paREP1 PAE3677 2212599 - 2212471 - | carbonic anhydrase part 2, authentic frameshift PAE3678 2212977 - 2212633 - | carbonic anhydrase part 1, authentic frameshift PAE3679 2215166 - 2213340 - | protease IV, conjectural TERM 2046 2214058 - 2214048 - G 74 -2.4 -5.09173 | opp_overlap 2214048 CAAGACCTCAAAAAA GCCC CTT GGGA TTATATTGCCGTGGG TERM 2047 2214095 - 2214105 + g 79 -4.6 -4.91109 | opp_overlap 2214086 CTAATACTACATAGG GCCT GTA GGGC TTTTTCTCCTCAGGC TERM 2048 2215034 - 2215054 + g 78 -7.6 -4.32034 | overlap 2215036 TAACCTCTGCCGTTA TTGACGAC CTCAC GTCGTCGA TTTTCATAGTAATAG PAE3680 2216106 - 2215195 - | hypothetical protein TERM 2049 2215712 - 2215731 + g 73 -11.4 -2.71924 | gap 1, opp_overlap 2215708 2215709 2215712, overlap 2215711 2215717 GCATATATCAACTCA GCCC-CGGC GTC GCCGAGGGC CTTTGAGAGGCCGTA TERM 2050 2215731 - 2215712 - G 73 -11.4 -2.59686 | gap 1, opp_overlap 2215712 2215711 2215717, overlap 2215708 2215709 GCATATATCAACTCA GCCC-CGGC GTC GCCGAGGGC CTTTGAGAGGCCGTA PAE3682 2216590 - 2216108 - | hypothetical protein PAE3683 2217491 - 2216649 - | hypothetical protein TERM 2051 2217281 - 2217267 - G 80 -11.4 -3.4052 | overlap 2217268 2217276 GGTGAATTGAAGCAA GTGGGC AAA GCCCAC AGCCCCGCGTCTGTA PAE3684 2217535 - 2218722 + | hypothetical protein PAE3685 2218762 - 2219067 + | hypothetical protein TERM 2052 2219737 - 2219757 + G 100 -14.7 -3.55622 | opp_overlap 2219724 2219735 2219726 AACAGGGCGAACATC GACGTGGCC CTC GGCCGCGTC TTTACAGCCCTTGAC TERM 2053 2220241 - 2220221 - g 75 -5.3 -4.59109 | overlap 2220222 TAGACGTGTTAAAAA TCGCGGC TGTACGG GCCGCGG CGCCTAATTCGCTTA PAE3687 2219407 - 2220486 + | hypothetical protein TERM 2054 2220867 - 2220894 + GT 86 -6.2 -5.08824 | overlap 2220868 GGCTTTTAGGGGAGT TGTGGCTCTTGG CGAG CAGAGAGCCGCG TTTTTTAACTGAGCG PAE3689 2222244 - 2221672 - | hypothetical protein PAE3688 2220539 - 2221750 + | hypothetical protein