TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.356636 %AT, 4573667 nt, 42216 terms. Intergenic: 0.405369 %AT, H2T: 461841 nt, 4817 terms; T2T: 127868 nt, 2917 terms; H2H: 200644 nt, 4101 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|187925958|ref|NC_010678.1| Ralstonia pickettii 12J chromosome 2, complete sequence (length 1302238) Rpic_3761 1618 - 23 - | peptide chain release factor 3 TERM 1 1665 - 1650 - H 70 -3.2 -4.7078 | GGAAGGAGTGAAAAA TGCGGA TGGT TGCGCA CGTGGCACGTGCGCT Rpic_3762 1899 - 2207 + | hypothetical protein TERM 2 2230 - 2247 + F 100 -12.7 -5.07652 | TCCGCATCGTGTCGA GGGCCAC CTGC GTGGCCC TTTTCTTTTGGGGCA Rpic_3763 2330 - 2632 + | hypothetical protein Rpic_3764 3636 - 2647 - | ribonuclease BN TERM 3 3655 - 3678 + r 100 -17.4 -3.56092 | opp_overlap 3655 CGATCCTCGAAGAAA GCGGCGCGGG CGGC CCCGTGCCGC TTTCGAGCGTAGTCA TERM 4 3678 - 3655 - R 100 -15.2 -4.16016 | opp_overlap 3655 CGATCCTCGAAGAAA GCGGCGCGGG CGGC CCCGTGCCGC TTTCGAGCGTAGTCA Rpic_3765 4026 - 3721 - | hypothetical protein Rpic_3766 4247 - 4080 - | protein of unknown function DUF1328 Rpic_3767 5773 - 4367 - | two component, sigma54 specific, transcriptional regulator, Fis family TERM 5 5874 - 5859 - H 76 -6.2 -4.59773 | CGGCAGGTGCAAAAA GTATTC CAGC GAATAC GGCCACGGCAATCAC TERM 6 7272 - 7222 - g 73 -12.5 -3.34895 | gap 2 CCGACCGTCAAGGAA GGCGTGCTGAACCTGTCGGTCGGCG TCA CGCTGGCCG--AGGCCCAGCGCGCC ATGATCCTGGCCACG Rpic_3768 6310 - 7407 + | sigma54 specific transcriptional regulator, Fis family TERM 7 7533 - 7557 + T 74 -11.3 -3.53444 | overlap 7534 TCATGCGGTGGAGGC GCGGGCCGGCG CGG TGCCGGCTCGG TTTCCGCGCGCATGC TERM 8 7534 - 7556 + T 77 -14.8 -2.71924 | overlap 7533 CATGCGGTGGAGGCG CGGGCCGGCG CGG TGCCGGCTCG GTTTCCGCGCGCATG Rpic_3769 7950 - 7630 - | conserved hypothetical signal peptide protein Rpic_3770 8263 - 9765 + | RNA polymerase, sigma 54 subunit, RpoN TERM 9 10748 - 10782 + G 71 -14.2 -2.71712 | overlap 10747 ACTGGTAGATGAGCA CGTCGGCTATGCGGTG CCA CGCTGCAGCGCCGACG ATTTCGCCCAGGCGC Rpic_3771 9819 - 10991 + | glycosyl transferase group 1 Rpic_3772 11010 - 11804 + | hypothetical protein Rpic_3773 12347 - 11811 - | phosphoesterase PA-phosphatase related Rpic_3774 13497 - 12325 - | glycosyl transferase group 1 TERM 10 13522 - 13557 + r 93 -16.9 -3.29144 | gap 1 CAGGGCTTGCGTTCT GCGCGACTGGGGCCGG GCCTG CCGGCCTC-GTTGCGC TTGTCGGCCAGGTCG Rpic_3775 13937 - 13506 - | hypothetical protein Rpic_3776 15458 - 14139 - | protein of unknown function UPF0118 Rpic_3777 17844 - 15460 - | PAS/PAC sensor hybrid histidine kinase TERM 11 17808 - 17784 - G 83 -5.5 -4.86731 | overlap 17785 17787 17789 TCCCGCCAAAGAAAA CGACACGCGCC TGC GGCACGCGGTG TGCCGGTGCCAGCAG TERM 12 17827 - 17789 - G 78 -14 -3.21914 | gap 3, overlap 17784 17787 17785 CCAAAGAAAACGACA CGCGCCTGC-GGCACGCGG TGTG CCG-GTGCCAGCAGGC-CG GATACAGATGTGCTC TERM 13 17910 - 17893 - R 100 -12.7 -5.7946 | CGCGCAAGAAAAAAA GCGGTGC CTGG GCACCGC GTCGTGCTACGTGAA Rpic_3778 18711 - 17929 - | hypothetical protein Rpic_3779 19004 - 20287 + | putative proline-rich protein TERM 14 20520 - 20539 + T 100 -10.7 -4.82901 | opp_overlap 20520 TAGCTGGCAAAAAAA CGCGGAC GCAACG GTCCGCG TTTTTCTGCCAGGCA TERM 15 20539 - 20520 - T 100 -10.7 -5.41143 | opp_overlap 20520 TAGCTGGCAAAAAAA CGCGGAC GCAACG GTCCGCG TTTTTCTGCCAGGCA Rpic_3780 21865 - 20561 - | Xanthine/uracil/vitamin C permease TERM 16 21788 - 21829 + g 73 -12.2 -3.37612 | opp_overlap 21761 CATTGTGAGGAACGT CGTCAGGCCGGCGAGCAC CTCGGT GCGCACGTCGGTCTGATG TTCCTTGAGCTTGAA TERM 17 22248 - 22201 - H 85 -15.8 -3.17392 | CAGGTTGCAAGCGAA TTTGCGTACCCATTTCTGCG CGTGATGT CGCAGAAACAGGTACGCATA AGGGCCGCCGCCATC TERM 18 23172 - 23132 - H 85 -12.5 -3.76224 | CTGGTAGTTAGGAAA GGTCTTCCGTGGACAACCC TAC AGGTTGCCCACCGACGCCC TTCCCCCAGCAACGA Rpic_3781 23271 - 24344 + | plasmid encoded RepA protein TERM 19 24388 - 24371 - T 100 -12.7 -4.87389 | opp_overlap 24371 GAGGGCAAAAAGAAA GGGGAGC CGAA GCTCCCC TTTTTCATTTCTGGC TERM 20 24371 - 24388 + T 100 -12.7 -5.04601 | opp_overlap 24371 GAGGGCAAAAAGAAA GGGGAGC CGAA GCTCCCC TTTTTCATTTCTGGC Rpic_3782 24624 - 24421 - | cold-shock DNA-binding domain protein TERM 21 24681 - 24653 - H 100 -3 -6.17033 | overlap 24655 AAAAAAAACAAAAAA CACGTCGTCCAG CCGAT CCGGACATCGCA CGAAGAGTCCGGCTC TERM 22 24679 - 24655 - H 76 -5.6 -4.6155 | overlap 24653 AAAAAACAAAAAACA CGTCGTCCAG CCGAT CCGGACATCG CACGAAGAGTCCGGC TERM 23 24765 - 24779 + H 70 -3.5 -4.59109 | overlap 24774 CAGTTTGGTCCACAG TGTCG ATGGG CGGCA TTTTTCCAAAATGTC TERM 24 24774 - 24796 + H 93 -11.4 -4.37092 | overlap 24765 CCACAGTGTCGATGG GCGGCATTTT TCC AAAATGTCGC TTTTATGCACCCGCT TERM 25 25092 - 25066 - g 76 -2.1 -4.88407 | overlap 25067 25068 GTATTCAATCAAAAA GGCGGCTGCGG GAAGA CCACAGTCAGC ATGCACATCGCCGGA Rpic_3783 25030 - 25698 + | Cobyrinic acid ac-diamide synthase Rpic_3784 25695 - 26702 + | parB-like partition protein TERM 26 26745 - 26730 - f 72 -11.8 -3.28269 | opp_overlap 26730, overlap 26725 AAGCTTCAAACGTAA GCGCCC TCCG GGGCGC TTTTCTTTTTTGGAA TERM 27 26730 - 26745 + F 100 -11.8 -5.42198 | opp_overlap 26730 26725 AAGCTTCAAACGTAA GCGCCC TCCG GGGCGC TTTTCTTTTTTGGAA Rpic_3785 27001 - 27837 + | hypothetical protein TERM 28 28689 - 28666 - g 70 -10.9 -3.30124 | opp_overlap 28685 28686 TGGCATCGTGGAGAA GCCGGCGCC AAGCGA GGCGCCGTC CAATCTGGGCGTGGT TERM 29 28975 - 28949 - g 84 -14.5 -3.35992 | gap 1, overlap 28939 ACGTATCTGAACGAA CGCCTTGGTCGG GCGC CCGACC-AGGCG ACACCCTTGGGCAAG Rpic_3786 28088 - 29041 + | UTP-glucose-1-phosphate uridylyltransferase TERM 30 30069 - 30035 - g 88 -8.5 -4.58859 | gap 1 AAAGAGAATAAGAAA CGCGGCACGCTGGCCG AACT CGCCAAGCAT-CCGCG CGCGGTGGCCATCGT Rpic_3787 29300 - 30646 + | General substrate transporter Rpic_3788 30651 - 32558 + | integral membrane sensor signal transduction histidine kinase TERM 31 32982 - 32951 - g 84 -8.7 -4.56597 | gap 1, overlap 32971 32972 CGTGCGCTGGAAAAA CGCAGGCTCACGGC AGAAA ACC-TGCGCCTGCG CGAGGCGCTGCAGGG TERM 32 32993 - 32971 - g 70 -4.7 -4.4009 | overlap 32951 32972 GCTCACGGCAGAAAA CCTGCGCCT GCGCG AGGCGCTGC AGGGCCGTCAGGCCT TERM 33 33123 - 33165 + G 75 -3.9 -4.65916 | gap 1, opp_overlap 33122 33123 33150, overlap 33124 GCTCGGGCAAGGAAG TGCTCGCGCGTGCCATCCAC GAAG GTAGCCGGCG-GCGCGGGCC TTTTGTTGCGCTCAA Rpic_3789 32555 - 33913 + | two component, sigma54 specific, transcriptional regulator, Fis family Rpic_3790 34710 - 33910 - | putative lipoprotein transmembrane TERM 34 34549 - 34530 - G 71 -7.8 -4.08706 | overlap 34532 GCCGCAGCAGATAAA CATGGAGC GTGC GCTCCAGG ATCAGCGCAAACAGG Rpic_3791 34823 - 35263 + | conserved hypothetical signal peptide protein TERM 35 37729 - 37784 + G 72 -11.6 -3.53012 | gap 1, overlap 37732 GCGACGCCTTGTTGC GCACGGTCGCGCAGCGGCTGGTGCGCG CGG TGCGCCCCAGCGACGGCGTGGC-GCGC TTTGGCGGGGACGAG Rpic_3792 35376 - 38057 + | diguanylate cyclase with PAS/PAC sensor Rpic_3793 38492 - 39652 + | Extracellular ligand-binding receptor TERM 36 39676 - 39710 + F 74 -6.3 -4.56597 | gap 1, opp_overlap 39654 39677, overlap 39677 39678 TCTCGTAGAGACCGA ACCG-CGGGGCGTAGG CAAA CCTACGCCCCATCGCA TTTTTGCGGCACCAA TERM 37 39708 - 39677 - f 74 -12.2 -3.15999 | opp_overlap 39676 39677 39678 CTCGTAGAGACCGAA CCGCGGGGCGTAGG CAAA CCTACGCCCCATCG CATTTTTGCGGCACC TERM 38 39678 - 39708 + F 72 -13.3 -2.60032 | gap 1, opp_overlap 39677, overlap 39677 39676 TCGTAGAGACCGAAC CG-CGGGGCGTAGG CAAA CCTACGCCCCATCG CATTTTTGCGGCACC Rpic_3794 39749 - 40630 + | inner-membrane translocator Rpic_3795 40644 - 41552 + | inner-membrane translocator Rpic_3796 41560 - 42357 + | ABC transporter related Rpic_3797 42354 - 43079 + | ABC transporter related TERM 39 43095 - 43116 + T 100 -14.4 -5.24129 | opp_overlap 43095 GCGTGCTGTCAAAAA CCGGCGCC CTCTCT GGCGCCGG TTTTTTATCGCCAAG TERM 40 43116 - 43095 - T 100 -14.4 -4.56597 | opp_overlap 43095 GCGTGCTGTCAAAAA CCGGCGCC CTCTCT GGCGCCGG TTTTTTATCGCCAAG Rpic_3798 44049 - 43153 - | transcriptional regulator, LysR family TERM 41 44067 - 44084 + H 75 -2.7 -5.00616 | CACGCGCCAACGAAC GTTTAGA CGAG TCTGAGC TTTTTTGCACAGAAG TERM 42 45166 - 45205 + G 86 -15.7 -3.22476 | gap 2, overlap 45173 GGCTGACGCGGCCGC CGCGCACG-CG-GCGCTCG AGGG CGGGCGCACGTCGGGCGCG TTGCTGCTGCGTCCT Rpic_3799 44225 - 45223 + | Alcohol dehydrogenase zinc-binding domain protein Rpic_3800 45319 - 45636 + | YCII-related TERM 43 46041 - 46091 + G 100 -21.8 -2.80816 | opp_overlap 46021 AGGCCATTGCCGTGG GCGACGGCGTGCTGAGCGCTCGGC AGA GCCTGGTGCGCAGTGCGTCGTCGC TGTGCTCGGTGGCCA Rpic_3801 45689 - 47083 + | Chloride channel core TERM 44 47130 - 47151 + F 70 -3.1 -4.68612 | gap 1 GTTGTACCGCCGCCC TTACTTT-GC CCC GCTAAAGTGA TTTTCTGATTTCTTT Rpic_3802 47353 - 49581 + | TonB-dependent siderophore receptor Rpic_3803 49630 - 50316 + | 2OG-Fe(II) oxygenase Rpic_3804 50523 - 50377 - | hypothetical protein Rpic_3805 53176 - 50648 - | Pyruvate, water dikinase TERM 45 51179 - 51196 + g 75 -3.3 -4.83169 | gap 1, overlap 51179 51180 TTCCGATTGATCCAG C-GCGCCC GCC GGGCACAG TTTTTCTGCCAGCCT Rpic_3806 53805 - 53176 - | transcriptional regulator, TetR family TERM 46 54692 - 54660 - g 90 -15.5 -3.61398 | overlap 54661 TGCTGGCTGGAAGAA GGCCAACTGCTGCGC GAG GCGCAGCGGCTGGCG GGCATCCCGGGCGTG TERM 47 54691 - 54661 - g 90 -19 -2.76696 | overlap 54660 GCTGGCTGGAAGAAG GCCAACTGCTGCGC GAG GCGCAGCGGCTGGC GGGCATCCCGGGCGT Rpic_3807 53925 - 54878 + | proline iminopeptidase Rpic_3808 54933 - 57359 + | multi-sensor hybrid histidine kinase Rpic_3809 57801 - 58388 + | Fimbrial protein TERM 48 58397 - 58413 + F 88 -13.7 -3.64703 | opp_overlap 58389 58393 CGAGTAAGCCAGGCG CCAGCCG ATT CGGCTGG TTTCAATCGGCAGCG TERM 49 58417 - 58449 + F 84 -10.5 -4.1552 | overlap 58421 58445 CGATTCGGCTGGTTT CAATCGGCAGCGG TACTTCC CCGCTGCCGTCTG TTTCTTCACAGGCTA TERM 50 58421 - 58445 + F 90 -14.3 -3.41738 | overlap 58417 TCGGCTGGTTTCAAT CGGCAGCGG TACTTCC CCGCTGCCG TCTGTTTCTTCACAG TERM 51 58505 - 58485 - g 85 -8.1 -4.6038 | opp_overlap 58488 58504, overlap 58489 GATATGAAAGCAAAA CGATGCGCC GCT GGCGCGGCG TTGGCGTGCGCGTTG TERM 52 58737 - 58721 - g 80 -12.3 -3.737 | opp_overlap 58720 58717 58721, overlap 58677 CAAGGTGGCAGCAAA GCAGCAG CAA CTGCTGC GTGTGTTGTACGAAG TERM 53 58829 - 58868 + G 72 -11.4 -3.48276 | gap 1, opp_overlap 58832, overlap 58832 GACCGCCCATAACGA CAACGTGTTGCAGCTGGCG GTC CGCCAGC-GCATCAAGGTG TTCTATCGACCGGCC TERM 54 58865 - 58832 - g 74 -11.7 -3.56325 | gap 1, opp_overlap 58829 58832 CGCCCATAACGACAA CGTGTTGCAGCTGGCG GTC CGCCAGC-GCATCAAG GTGTTCTATCGACCG Rpic_3810 58473 - 59216 + | Pili assembly chaperone, N-terminal TERM 55 59241 - 59217 - f 78 -15.7 -2.53263 | opp_overlap 59222 TCCACCGGCAATTGA TCGAGCCGGCC GCG GGCCGGTTCGA TTGCACCAGCCCGCC TERM 56 59222 - 59236 + F 74 -12.8 -3.17075 | opp_overlap 59217 CGGCAATTGATCGAG CCGGCC GCG GGCCGG TTCGATTGCACCAGC TERM 57 59423 - 59393 - g 72 -6.8 -4.31688 | gap 1, opp_overlap 59393 AAGACCAATGGAAAA GCGGTTGCTGCGC GTCCGA GCGCAACG-CCGC TGTATCTGGCCGTAT TERM 58 60164 - 60187 + G 77 -11.8 -3.59262 | gap 1, overlap 60163 GAACAGTATTCCGAC GC-CACGCTGT TCG ACAGCGTGCGC TTTCGCGGTGTGCAA Rpic_3811 59300 - 61927 + | fimbrial biogenesis outer membrane usher protein Rpic_3814 63686 - 63982 + | transposase IS3/IS911 family protein Rpic_3815 63979 - 64872 + | Integrase catalytic region TERM 59 65220 - 65233 + G 74 -2.3 -4.75776 | opp_overlap 65220 GGTGTCGGCACATCA CTGTC TCCC GTCAG TTTTTCCATTGCCTT Rpic_3816 64884 - 65552 + | Fimbrial protein TERM 60 65742 - 65718 - f 100 -15 -5.4833 | opp_overlap 65718 GCAGGCAACAAAAAA CCCGCAAGGC GCAAT GCCTCGCGGG TTTTTTTAGTCCACG TERM 61 65718 - 65742 + F 100 -13.5 -5.52384 | opp_overlap 65718 GCAGGCAACAAAAAA CCCGCAAGGCG CAA TGCCTCGCGGG TTTTTTTAGTCCACG TERM 62 66016 - 65980 - f 71 -6.5 -4.25104 | gap 1, opp_overlap 65999 TGGCCGTCAGCAAAA CGGTCA-CCGCGCTGC TACGCT GCCGCGCAGTTCACCG CAGTCCATTCAACGA Rpic_3817 66041 - 66868 + | Beta-lactamase Rpic_3818 67603 - 66878 - | transcriptional regulator, ArsR family Rpic_3819 67725 - 69101 + | major facilitator superfamily MFS_1 TERM 63 69163 - 69139 - f 88 -3.6 -5.47218 | gap 1, overlap 69141 GTCGACCCAAAAAAA TA-CCCGGC GAGGGGAT GCCGGGCTA AGTGGGATGGAAATC TERM 64 69160 - 69141 - f 77 -7.8 -4.37763 | overlap 69139 CGACCCAAAAAAATA CCCGGC GAGGGGAT GCCGGG CTAAGTGGGATGGAA Rpic_3820 69918 - 70097 + | hypothetical protein Rpic_3821 70097 - 71605 + | Na+/solute symporter TERM 65 71631 - 71656 + F 73 -10.3 -3.66178 | TTTTAGTCAGGGGAA GGGCCGGTGCC GGAA GGTGCCCGCCC TTTCCCGTTGCACCC TERM 66 71683 - 71697 + F 100 -12.8 -5.75342 | opp_overlap 71683 ACCCCTCGACGAGAA CCCCGC AAT GCGGGG TTTTTTTTCGCGCCC TERM 67 71697 - 71683 - f 76 -12.8 -3.40522 | opp_overlap 71683 ACCCCTCGACGAGAA CCCCGC AAT GCGGGG TTTTTTTTCGCGCCC Rpic_3822 71890 - 72288 + | hypothetical protein Rpic_3823 72406 - 72690 + | hypothetical protein Rpic_3824 73264 - 72842 - | GCN5-related N-acetyltransferase Rpic_3825 74386 - 73316 - | arsenical-resistance protein Rpic_3826 74963 - 74460 - | protein tyrosine phosphatase Rpic_3827 75456 - 74974 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_3828 75722 - 75468 - | putative transcriptional regulator, ArsR family TERM 68 76861 - 76845 - g 70 -11.5 -3.40371 | overlap 76814 GACGTCATCAAGGAA GCGGCGG ACG CCACCGC GCAGAATGACGACGA Rpic_3829 76071 - 76991 + | putative exonuclease RdgC Rpic_3830 77726 - 77049 - | putative periplasmic ligand-binding sensor protein Rpic_3831 77993 - 80371 + | NADH:flavin oxidoreductase/NADH oxidase Rpic_3832 80373 - 81155 + | short-chain dehydrogenase/reductase SDR Rpic_3833 81152 - 81736 + | transcriptional regulator, MarR family Rpic_3834 81754 - 82614 + | Enoyl-CoA hydratase/isomerase Rpic_3835 82616 - 83791 + | acyl-CoA dehydrogenase domain protein Rpic_3836 83828 - 85444 + | AMP-dependent synthetase and ligase TERM 69 85849 - 85796 - g 72 -13.2 -3.06492 | gap 3 TTACTGATCTCAATA CGCATCG-CGCGATCGCGGTGCCGCCC GAT GTGCGGCAG-GCGATCGAGGCGA-GCG TTCAACAGTCGCAAT Rpic_3837 85441 - 85872 + | putative 4-hydroxybenzoyl-CoA thioesterase protein Rpic_3838 85886 - 86278 + | Endoribonuclease L-PSP TERM 70 86299 - 86285 - T 88 -3.4 -5.47218 | CCGGACTGAAAAAAA CGACGC TTA ACGACG CATCAGAAAGTCTGT TERM 71 86592 - 86608 + T 76 -9.4 -4.05004 | opp_overlap 86582 86592 AACGACGTCACGAAA GACGCG ATCGC CGCGTC TTCTTCTTCTGATCG TERM 72 86608 - 86592 - T 76 -10.1 -3.75437 | opp_overlap 86592, overlap 86582 AACGACGTCACGAAA GACGCGA TCG CCGCGTC TTCTTCTTCTGATCG Rpic_3839 87660 - 86584 - | transcriptional regulator, AraC family TERM 73 86771 - 86755 - G 75 -4.4 -4.6902 | gap 1, overlap 86757 CGAGAAGCCCAAAAA GC-CCGA GATC TCGGCGC ATTGGCGCTCACCCT Rpic_3840 87800 - 88195 + | Carboxymuconolactone decarboxylase Rpic_3841 88231 - 89280 + | protein of unknown function DUF849 TERM 74 89323 - 89293 - f 76 -14.6 -2.50443 | opp_overlap 89295, overlap 89292 TGAGAGCGCAGCAAG CGGCGGGCGCACCA TGG TGGCGCGCCCGCTT TGGTGTGTTGACGCT TERM 75 89295 - 89321 + F 100 -19.4 -3.93262 | opp_overlap 89293 89292 AGAGCGCAGCAAGCG GCGGGCGCACCA TGG TGGCGCGCCCGC TTTGGTGTGTTGACG Rpic_3842 89396 - 90217 + | short-chain dehydrogenase/reductase SDR TERM 76 90974 - 90999 + G 80 -4.7 -4.81212 | gap 1 GTGCTGGGCGCCAAT CCGACC-TTGCT GGC GGTGACGGTCGG TTTTGTTCTGGTGCA Rpic_3843 90335 - 91618 + | major facilitator superfamily MFS_1 TERM 77 91967 - 91951 - T 86 -15.1 -3.33696 | GCCGTTCTGAATGAA CCCCGGC GTG GCCGGGG ACGACAACAAAAGAG Rpic_3844 93480 - 92176 - | metabolite/H+ symporter, major facilitator superfamily (MFS) TERM 78 92461 - 92434 - G 73 -12 -3.31461 | GATCGACGTGTAGAA GCTCACGATGGC CAGC GCCACCGTGATC AGGCCGAAGGCCGCA TERM 79 92630 - 92620 - G 74 -4.6 -4.47183 | CACCATGTAAACAAA CAGC GCC GCCG TCATCACGTTGGAAG TERM 80 93130 - 93115 - G 71 -11.8 -3.23692 | GAGCAGGAGGATGAA CGGCGC GAGC GCGCCG ATCTGCGCATACGTC Rpic_3845 94884 - 93664 - | major facilitator superfamily MFS_1 Rpic_3846 95820 - 94984 - | transcriptional regulator, GntR family Rpic_3847 96536 - 95985 - | transcriptional regulator, HxlR family TERM 81 97136 - 97148 + G 71 -10.5 -3.60792 | GCATGATCGGACTGG CCCGC GAT GCGGG TTTCCGGCTTGCCAA Rpic_3848 96670 - 97248 + | GCN5-related N-acetyltransferase TERM 82 97305 - 97323 + F 90 -5.8 -5.252 | overlap 97308 CCGTGTGTCTCTTTC GCCGCCGC TGA GCGGCTTC TTTTTTGTGCGCATG TERM 83 97308 - 97320 + F 89 -10.5 -4.72201 | overlap 97305 TGTGTCTCTTTCGCC GCCGC TGA GCGGC TTCTTTTTTGTGCGC Rpic_3849 97487 - 97921 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_3850 97972 - 98844 + | transcriptional regulator, LysR family Rpic_3851 98945 - 99730 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Rpic_3852 101033 - 99735 - | major facilitator superfamily MFS_1 Rpic_3853 101195 - 101836 + | transcriptional regulator, TetR family Rpic_3854 101968 - 102939 + | ATPase associated with various cellular activities AAA_3 TERM 84 103012 - 103053 + G 100 -20.2 -3.85698 | gap 1 GGTGCCGGGCTGGCT GCGTTGC-CGGGCGTCCGC CTGGC GCGGACGCGCGTGCAGCGC TTTCTGCAGCGGCCG Rpic_3855 102952 - 104025 + | protein of unknown function DUF58 TERM 85 104679 - 104644 - g 72 -11.2 -3.54424 | gap 1, opp_overlap 104643 CGCGATCCGCCGAAA CCGGCACCA-GCGGT ATCTCCG ACCGCATGGCACCGG GTTCGATCGGCCAAC Rpic_3856 104022 - 106046 + | transglutaminase domain protein Rpic_3857 106559 - 107629 + | putative lipoprotein TERM 86 107670 - 107650 - T 100 -16.9 -3.75153 | opp_overlap 107638, overlap 107661 GCCCTGCAATGCAAA TGGGCCAGC AAG GCTGGCCCA TCACCAAGCCGTTCA TERM 87 107675 - 107705 + T 100 -14.9 -4.70887 | gap 1, opp_overlap 107661 107678, overlap 107638 AGGCTGGCCCATCAC CAAGCCGTTCATGC GCGA GC-TGAACGGCTTG TTTCTTTGTTGCTCC Rpic_3858 108911 - 107724 - | AcnD-accessory protein PrpF Rpic_3859 111505 - 108908 - | 2-methylisocitrate dehydratase, Fe/S-dependent TERM 88 110724 - 110778 + g 73 -15 -2.52464 | opp_overlap 110723 TGCTTGCGCAGGAAT TCGGTCAGCGCCAGCACGATATCG GTGGCGG TGATGCCGGGTTGGCGCTGGCCGG TCAGTTCCACGCCAA TERM 89 111698 - 111711 + r 75 -2.3 -5.00884 | AACTCGCTTCGCTCA GACAG TTCC CCGTC TTTTTTCCGCCCGCT TERM 90 111757 - 111799 + r 100 -7.1 -6.02546 | gap 2, opp_overlap 111760 CGCCATCCAGGGCAG GAACGTCAACG--GCCACACC GTC GGTGGGTTTGCGTTGACGTTC TTTTTTTTGCTTTCC Rpic_3860 112990 - 111821 - | 2-methylcitrate synthase/citrate synthase II TERM 91 112787 - 112810 + g 71 -10.2 -3.68222 | CTTGTTCGGCAGCTT GCCGTGCACC AGCA GGTGCGCGAC TTCTTCAAATTCGCA Rpic_3861 113923 - 113027 - | methylisocitrate lyase TERM 92 115385 - 115371 - g 72 -12.8 -3.05463 | opp_overlap 115367 115366, overlap 115357 ACGGGGCTGATTGAA GCCGCG CAC CGCGGC ACACTGTTTCTCGAT Rpic_3862 114117 - 116063 + | proprionate catabolism activator, Fis family Rpic_3863 116177 - 116872 + | metal dependent phosphohydrolase TERM 93 117140 - 117124 - g 72 -2.9 -4.614 | overlap 117127 CGGAATGATAGAAAA CAATCCC TCG GAGACCG CCCGGCACGCCCTCA TERM 94 117716 - 117693 - g 75 -7.5 -4.25458 | gap 1, opp_overlap 117696, overlap 117697 AAGCCCAGGAAGAAA TGAAG-CGGC TGCTG GCCGCCTTCA TGGAGCGCCTGTCCG Rpic_3864 117113 - 118459 + | diguanylate cyclase Rpic_3865 119051 - 118482 - | isochorismatase hydrolase Rpic_3866 119260 - 120567 + | Chloride channel core TERM 95 120606 - 120572 - T 74 -7 -4.36914 | opp_overlap 120578, overlap 120576 120586 CGGCGGCGTAGAAAA CCCAGGCCGGAACAGC GCC GCTGCTCCGGTTTCAG CACCCGGCAACGTCA TERM 96 120578 - 120600 + T 86 -13.4 -3.53012 | opp_overlap 120576 120572 120586 CGTAGAAAACCCAGG CCGGAACAGC GCC GCTGCTCCGG TTTCAGCACCCGGCA Rpic_3867 121098 - 120619 - | 3-demethylubiquinone-9 3-methyltransferase TERM 97 121514 - 121538 + r 100 -12.2 -5.86061 | opp_overlap 121518 ACGACGCCCCAACAA TAAAGCCGCC CCAAA GGCGGCTTTG TTTTTTTTGGTAGAG TERM 98 121534 - 121518 - R 95 -11.5 -4.44667 | opp_overlap 121514 CGCCCCAACAATAAA GCCGCCC CAA AGGCGGC TTTGTTTTTTTTGGT Rpic_3869 122412 - 121558 - | putative lipoprotein transmembrane TERM 99 123185 - 123172 - H 76 -5.9 -4.67168 | overlap 123173 123174 AAAAACCCCCAAAAA CCCCA CCAA CGGGG GCAGCGCAATCCCGA TERM 100 123379 - 123331 - g 91 -11.1 -4.46212 | opp_overlap 123370 123376, overlap 123334 GGGCGGAGGAGAAAA CAAGCATCCACCAGCGAC-GTGC TGTTG GCGCTGCCG-TGGTGGATGCTGG CCCTTGGCGCGGCGG TERM 101 123376 - 123334 - g 90 -11.4 -4.35042 | opp_overlap 123370, overlap 123331 CGGAGGAGAAAACAA GCATCCACCAGCGAC-GTGC TGTTG GCGCTGCCG-TGGTGGATGC TGGCCCTTGGCGCGG Rpic_3871 123313 - 124284 + | DNA topoisomerase type IA zn finger domain protein TERM 102 125182 - 125199 + G 74 -11.3 -3.58726 | overlap 125173 TTTGGGGGAGGCACT CCTTCGC TATT GCGAAGG TTCTCTGTCGAACGA Rpic_3872 124391 - 125287 + | DEAD/DEAH box helicase domain protein Rpic_3873 125450 - 125953 + | hypothetical protein Rpic_3874 127125 - 126085 - | hypothetical protein Rpic_3875 127550 - 127828 + | hypothetical protein TERM 103 127870 - 127847 - T 82 -10.9 -3.89346 | overlap 127851 AAAAACAGCAGCAAA GCGACCCCG GGACGG CGGGGGCGC CAGGCCAGGGCACAA Rpic_3878 129622 - 128552 - | putative transmembrane protein TERM 104 130716 - 130747 + G 81 -14.4 -3.47431 | gap 1, overlap 130712 130717 CCGCGCAGGCCAATG CGGCGGC-GGTTGCC AGT GGTGGCCAGCCGCCG TTCATCTTTACCTAT Rpic_3879 129908 - 132079 + | PTS system, lactose/cellobiose family IIC subunit TERM 105 132066 - 132090 + T 76 -14.3 -2.53759 | ACCTGCGGCCGTTGG TGCACGCGCTT TGA GAGCGCGTGCG TGGCTTAACGGTATT Rpic_3880 132694 - 132095 - | hypothetical protein TERM 106 133091 - 133101 + H 72 -2.4 -4.72986 | TTCCGGAAAGAGGAG CTGC TCT GCCG TTTTTCCTCCAGCTG TERM 107 133406 - 133431 + G 70 -2.5 -4.63932 | gap 1 GCCGAATTTCTGTCA GCGGCG-CTC GAGACGG GGGATGCCGC TTTTATTGCGGAGTC Rpic_3881 133388 - 133783 + | putative transcriptional regulator Rpic_3882 133925 - 134842 + | protein of unknown function DUF6 transmembrane Rpic_3883 135800 - 134874 - | putative transmembrane protein Rpic_3884 136065 - 136883 + | Enoyl-CoA hydratase/isomerase Rpic_3885 137907 - 136993 - | alpha/beta hydrolase fold Rpic_3886 138017 - 138508 + | transcriptional regulator, HxlR family TERM 108 138584 - 138595 + T 78 -2.2 -5.01535 | gap 1, overlap 138578 138584 CGCCGGGTATCGGAA GG-CG CTT CGACC TTTTTATCGTTATCA Rpic_3888 138926 - 138768 - | hypothetical protein Rpic_3889 140004 - 139069 - | transcriptional regulator, AraC family TERM 109 139784 - 139738 - G 76 -13.7 -3.15579 | GCAACGCTGCACGAA GCGGCG-CGTGCGTGCATCCGCC ATG GCCGCATCCACGC-CGTCGCCGC CGGCAATGAGCAGCG Rpic_3890 140105 - 140791 + | ThiJ/PfpI domain protein Rpic_3891 140827 - 141666 + | Adenosylhomocysteine nucleosidase Rpic_3892 142127 - 141672 - | hypothetical protein TERM 110 143616 - 143570 - g 70 -7.8 -3.96148 | overlap 143571 CTGGGCGACGAGAAA CTGCGCCACCTGATCCGCGATC CGC AATCGCTGCGCTGGTGGCCCAA CGCACGCATGTCGGC Rpic_3894 142862 - 143722 + | hypothetical protein Rpic_3895 144248 - 143739 - | protein of unknown function DUF1697 TERM 111 143792 - 143812 + g 88 -10.4 -4.35926 | overlap 143765 TCATGTTGCGCGCCG TCCCCGTC TTGGC GGCGGGGA TTTTCAGTTTGGAAT TERM 112 144135 - 144113 - G 71 -4.1 -4.56597 | GCCGGCTTTGAAAAA CCACGTTGC CGCTC GCAATGTAG GTGCGTACGCCGGTC TERM 113 144182 - 144194 + g 70 -4.7 -4.34402 | ACATCGCGCGCAATT CGGCC ATG GGCAG TTTTCCTGTGCCGCC Rpic_3896 144448 - 144876 + | putative transmembrane protein TERM 114 144880 - 144918 + F 86 -15.3 -3.35298 | gap 1, overlap 144875 144882 CACCACCATTGATGT GATGCGCCGGTGCGCTCG CCAT TGAGCGCACCGGC-CGAC TTCCTGCTTTCCTTC TERM 115 144882 - 144917 + F 78 -15.4 -2.60456 | overlap 144880 144875 CCACCATTGATGTGA TGCGCCGGTGCGCTCG CCAT TGAGCGCACCGGCCGA CTTCCTGCTTTCCTT Rpic_3897 145064 - 146443 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 116 146493 - 146469 - T 100 -13.5 -5.40072 | overlap 146472 GGCGCCTGAAAAAAA GAAGGGCGCCT TCC AGGCGCCCCAC ACATCGATTCGCTAG TERM 117 146490 - 146472 - T 100 -16 -4.79949 | overlap 146469 GCCTGAAAAAAAGAA GGGCGCCT TCC AGGCGCCC CACACATCGATTCGC Rpic_3898 147603 - 146521 - | sodium/calcium exchanger membrane region TERM 118 146990 - 146950 - G 71 -9.6 -3.76482 | gap 2, opp_overlap 146971 146972, overlap 146953 CGACACCATCAACAA CACCGC-GCTGAGCGC-CGC CAC GCGTGCGGGCGGCGGCGGTG CGTGCACGTCTTCGT TERM 119 147490 - 147463 - G 75 -12 -3.54424 | GTGGACGGCTGCAAA GACGGCACTCGC CAGT GCAAGCGCCATC AGTGCGATCAGCCAG TERM 120 147704 - 147676 - R 89 -11 -4.1891 | gap 1, overlap 147703 TGGCCCGAATATAAA GCATGTGCGGAGC CTCA GC-CCGCACAAGC GGCGTGCGTCACGCC Rpic_3899 148581 - 147727 - | conserved hypothetical signal peptide protein TERM 121 148239 - 148279 + g 75 -15.3 -2.74012 | ACACGTACCCGATCA CCTTGCCGCCGGCGGCATG CAC CTTGGCGACGGCGGCAACG TAGTTGGCGTCCTGC TERM 122 148693 - 148706 + H 71 -8.1 -4.07885 | TGTAGCTTTGCGTCG CCGGA TCAC TCCGG TTTTGCCCAGACCTC Rpic_3900 149036 - 149491 + | hypothetical protein Rpic_3902 150606 - 149713 - | transcriptional regulator, LysR family Rpic_3903 150693 - 151469 + | Ribosyldihydronicotinamide dehydrogenase (quinone) TERM 123 151511 - 151548 + F 100 -23.6 -4.59342 | gap 1, opp_overlap 151536, overlap 151511 151512 ATTTCGCATTCATCT C-CGGCGGCGCGCTGTA GCGGA TACAGCGCGCCGCCGCG TTTGTTTCTCCTCCC TERM 124 151511 - 151547 + F 100 -23.8 -3.34882 | opp_overlap 151536, overlap 151511 151512 ATTTCGCATTCATCT CCGGCGGCGCGCTGTA GCGGA TACAGCGCGCCGCCGC GTTTGTTTCTCCTCC TERM 125 151512 - 151546 + F 100 -27.3 -2.60206 | opp_overlap 151536, overlap 151511 151511 TTTCGCATTCATCTC CGGCGGCGCGCTGTA GCGGA TACAGCGCGCCGCCG CGTTTGTTTCTCCTC Rpic_3904 151579 - 152361 + | protein of unknown function DUF81 Rpic_3905 152394 - 152789 + | Carboxymuconolactone decarboxylase Rpic_3906 152811 - 153029 + | hypothetical protein Rpic_3907 153042 - 153851 + | alpha/beta hydrolase fold Rpic_3908 154494 - 153991 - | thioesterase superfamily protein TERM 126 154980 - 154999 + G 72 -11.4 -3.50456 | gap 1, opp_overlap 154974, overlap 154977 154975 GCTGATCAAGCTGCC GGCCGCTGC GCC GC-GCGGCC TTGCTGTTTCCTTCC Rpic_3909 154540 - 155064 + | hypothetical protein TERM 127 155069 - 155095 + F 77 -10.9 -3.60151 | gap 1 TTCGCGTTTGACGCC GCCAGTCCG-TC CATA GATCGGGCTGGC TTCTGGTTTGACGGC Rpic_3910 155161 - 155502 + | hypothetical protein Rpic_3911 155512 - 156924 + | outer membrane efflux protein Rpic_3912 156927 - 158225 + | multicopper oxidase type 3 Rpic_3913 158267 - 158755 + | blue (type 1) copper domain protein Rpic_3914 158791 - 159117 + | hypothetical protein Rpic_3915 159508 - 160515 + | lipopolysaccharide-modifying protein Rpic_3916 160642 - 161433 + | Phytanoyl-CoA dioxygenase Rpic_3917 161531 - 161752 + | hypothetical protein TERM 128 161791 - 161769 - f 78 -10.4 -3.87994 | opp_overlap 161770 161774, overlap 161770 ATCCACCTCCACAAA GCGCCCGCCG AGC CTGCGGGCGT TTTTGTCAGCACGTC TERM 129 161790 - 161770 - f 75 -13.9 -2.92475 | opp_overlap 161770 161774, overlap 161769 TCCACCTCCACAAAG CGCCCGCCG AGC CTGCGGGCG TTTTTGTCAGCACGT TERM 130 161770 - 161790 + F 100 -13.9 -4.83169 | opp_overlap 161770 161769, overlap 161774 TCCACCTCCACAAAG CGCCCGCCG AGC CTGCGGGCG TTTTTGTCAGCACGT TERM 131 162329 - 162356 + G 81 -13.4 -3.57144 | gap 1, overlap 162319 CGGCTTCAGCCGCGA TGCGCGCGG-CCG CTT CGGTCCGCCCGCA TTTGACGATGCCGCC Rpic_3918 161976 - 162416 + | hypothetical protein Rpic_3919 162436 - 163962 + | Carotenoid oxygenase Rpic_3920 165468 - 163975 - | peptidase dimerisation domain protein TERM 132 165260 - 165276 + g 74 -2.2 -4.77165 | overlap 165232 165257 165262 TAGAGCATCGGTTTG CCGTTG TTCGC CAACTG TTTTGTTGTGAAGCC TERM 133 165666 - 165654 - H 81 -4.7 -4.98531 | TCTGCAAAGCAAAAA GGCCC CCT GCGCC TACGTCGCCTATGTC Rpic_3921 165677 - 166594 + | transcriptional regulator, LysR family TERM 134 166691 - 166635 - T 70 -10 -3.53012 | gap 1, opp_overlap 166655, overlap 166636 CGCGGGTTCGTCAAA GCTGCGCAGCTTGCGCGAGTGCAGCGC TTCA ACGCCGCTTTCGCGCAACAGGCGCA-C GGCCTCCATGCCGAT Rpic_3922 168092 - 166611 - | AMP nucleosidase Rpic_3923 168913 - 168140 - | polar amino acid ABC transporter, inner membrane subunit Rpic_3924 169602 - 168910 - | polar amino acid ABC transporter, inner membrane subunit Rpic_3925 170561 - 169674 - | extracellular solute-binding protein family 3 TERM 135 171841 - 171865 + H 71 -5.5 -4.35461 | overlap 171843 171859 CTCGAAGGCTTGCGC GACGCGCGCGG ACG CCACGCGGGTG TTTTCCTGCTGTTGC Rpic_3928 172660 - 173166 + | hypothetical protein Rpic_3929 174571 - 173186 - | integral membrane sensor signal transduction histidine kinase Rpic_3930 175549 - 174797 - | Methyltransferase type 11 TERM 136 175232 - 175209 - G 78 -3.8 -4.84359 | gap 1, overlap 175222 TGATGGGCAGAAAAA CGCGTGGCAAC GAT GTCGA-ACGCG GCATCGTCAAAGGGC Rpic_3931 176588 - 175668 - | amidohydrolase 2 Rpic_3932 177891 - 176644 - | major facilitator superfamily MFS_1 Rpic_3933 180849 - 178027 - | malto-oligosyltrehalose synthase TERM 137 178740 - 178765 + g 72 -6.7 -4.26344 | opp_overlap 178735, overlap 178693 178741 GCGCGAACCAGTCAG TGCGCAGCTTG GCTT CGCGCTGCGCC TTTTCCTGCCACTGT Rpic_3934 183128 - 180846 - | 4-alpha-glucanotransferase Rpic_3935 185008 - 183167 - | malto-oligosyltrehalose trehalohydrolase Rpic_3936 187305 - 185005 - | glycogen debranching enzyme GlgX TERM 138 186764 - 186720 - G 78 -12.9 -3.51934 | gap 1, opp_overlap 186719, overlap 186718 186721 GGCGCTCGATAAAGA CGCTGTCGCCC-AGCGCG CTGAAGGTGC CGCGCTCGGGCGGCAGCA GGTCTTCGCGCAGCA TERM 139 186763 - 186721 - G 71 -14.2 -2.70946 | gap 1, opp_overlap 186719, overlap 186720 186718 GCGCTCGATAAAGAC GCTGTCGCCC-AGCGCG CTGAAGGTGC CGCGCTCGGGCGGCAGC AGGTCTTCGCGCAGC Rpic_3937 190203 - 187897 - | 1,4-alpha-glucan branching enzyme TERM 140 189147 - 189127 - G 74 -11.1 -3.60074 | overlap 189118 189145 GACAAAGCGCGCAAA CGCCTCGGG CGC CCCAAAGCG CGCAGACGGTGCGAA TERM 141 189784 - 189831 + g 76 -14.1 -3.14931 | overlap 189797 ATGCATGTCCAGATC GCCGAGCAGCAGCCCGAAGGC GTATGG GTCTTCGGTTTCCTGCACGGC TTCATGGCCGGTGCC Rpic_3938 193694 - 190200 - | trehalose synthase Rpic_3939 197281 - 193691 - | alpha amylase catalytic region Rpic_3940 198944 - 197313 - | glycogen/starch synthase, ADP-glucose type TERM 142 197860 - 197872 + g 76 -5.5 -4.56775 | AGGTGGGCAAAAGCC TCGGT GTA GCCGA TTTTTGCGGCCACCT TERM 143 198161 - 198144 - G 72 -6.9 -4.3255 | opp_overlap 198144 198143, overlap 198146 GTTGGAAGCAACAAA CGGCTGC GGCA GCAGCGG GTCTTTCGACGGGTT Rpic_3941 199347 - 199910 + | peroxiredoxin TERM 144 199951 - 199969 + F 100 -17.4 -3.90112 | opp_overlap 199951 TGCAGCGAGAAAAAA CGGCCGGC TCT GCCGGCCG TTTGCTTAAGGGCGC TERM 145 199969 - 199951 - f 100 -17.4 -5.28176 | opp_overlap 199951 TGCAGCGAGAAAAAA CGGCCGGC TCT GCCGGCCG TTTGCTTAAGGGCGC Rpic_3942 200036 - 201610 + | alkyl hydroperoxide reductase, F subunit TERM 146 201638 - 201665 + T 100 -15.6 -5.33405 | gap 1 CCGTACCTGTGCCGA GCCGGACTCCGCG ATC TGCGG-GTCCGGC TTTTTCTTTGGTGCC Rpic_3943 202575 - 201688 - | transcriptional regulator, LysR family TERM 147 202085 - 202034 - G 70 -11.5 -3.35073 | ACCAGCGGCAATGAA GGTTGCGATGGC-CCGAGCGGCAGC GTGT GCGGCCGCTCGGCGCTGTCG-ATCC AGCAAACTGGCTCAG TERM 148 202822 - 202836 + H 71 -8.6 -4.04318 | opp_overlap 202815 AGAAAATACTTGTAA TGCGAA TGA TTCGCA TTTATAGTGTGTCCA TERM 149 202984 - 203002 + H 73 -10.3 -3.57144 | overlap 202976 ATCTTTTGTGGGGAC CGCTCTG ATACA CAGAGCG TTTGGCAGTAGCAAG TERM 150 203080 - 203090 + H 100 -2.4 -6.06723 | ACTTTTCCGGGCTGC CAGC CAT GCCG TTTTTTTTTCAAGAA Rpic_3944 203210 - 203665 + | ferric uptake regulator, Fur family Rpic_3945 203762 - 204013 + | hypothetical protein Rpic_3946 204328 - 204023 - | hypothetical protein TERM 151 204408 - 204386 - R 100 -14.1 -5.07652 | opp_overlap 204383 204381 204373 TGCGCGAAAACAAAA CGGGCCCGC GCGAT GCGAGCCCG TGAGTGTTGTGGCGT Rpic_3947 204755 - 204435 - | putative transmembrane protein TERM 152 204672 - 204633 - G 84 -17.8 -2.66316 | gap 1, overlap 204630 CGGCCGATTACACCA GCCTGCCACGCGCGC-CGC CGT GCGGGCGCGCATCGCCGGC GCATAGCGGCCGGTC Rpic_3948 206617 - 204752 - | ferrous iron transport protein B TERM 153 206047 - 206077 + g 74 -10.3 -3.75292 | gap 1 CGTGCGGATCCGCAT CAGCCGGCAG-CCC GACC GGGACGGCCGGCAG TTGTTCGTGATCGAT TERM 154 206673 - 206658 - R 77 -11.8 -3.65812 | opp_overlap 206669 GCGGCGGCAATAGAA GGCGGC CTAT GCCGCC TCGCGCACCTTGACG Rpic_3949 206972 - 206664 - | FeoA family protein TERM 155 207161 - 207176 + H 78 -4.6 -4.77157 | opp_overlap 207143 207160 207161, overlap 207163 CGGAGGCCAAAAAGC CGCTGC CCGT GCAGGG TTTTTCCTAAATTAC TERM 156 207276 - 207301 + H 100 -19.1 -4.96848 | AAGCGTATTCTTGAG GCCACCGGGTA CCGC TACCCGGTGGC TTTTTCTATGGGCGC Rpic_3950 207660 - 211211 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpic_3951 212822 - 211233 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 157 212004 - 212029 + g 70 -14.1 -2.52543 | gap 1, opp_overlap 212000 GATGGACGACAGGCT TGCGCG-CATGG TGC CCATGGCGCGCA TGACTTCGCCCAGCT TERM 158 212551 - 212568 + g 71 -10.5 -3.61398 | opp_overlap 212550 212551 AGCACCCAGTAGAAG CCGCCGT CCTT GCGGCGG TTCTTGACGAAGCCG TERM 159 213215 - 213237 + G 71 -12.7 -3.02511 | CGAAGCGATGGACGC GGCGCTGCT GCACG GGCAGCGCC TGTTGCGCGAGTGGG Rpic_3952 213039 - 213290 + | hypothetical protein Rpic_3953 214131 - 213304 - | FAD-binding 9 siderophore-interacting domain protein TERM 160 213478 - 213433 - G 75 -15.3 -2.77899 | gap 1, opp_overlap 213438, overlap 213430 CTGCTTGAGCAAGGA CGCCTCGCCGGCCAGGAACACC TGC GGCGTGCC-GGCCGGCATGGCT TGAGCGCTGAGCGCA Rpic_3954 214891 - 214232 - | transcriptional regulator, PadR-like family TERM 161 214292 - 214312 + g 72 -3.2 -4.65895 | overlap 214293 214294 TGCCACGCGTTGCTG TTCTTCGC GCGAA GCGAAGCG TTTTTCCATGAGGGC TERM 162 214732 - 214756 + g 74 -12.7 -3.22223 | opp_overlap 214729 CGGCTGAACTGAGCC GGCGGCCGCGC CAG GGGCTGCCGCC TTCGTCGTCACCTTC Rpic_3955 215519 - 215004 - | transcriptional regulator, MarR family Rpic_3956 215598 - 216095 + | alkylhydroperoxidase like protein, AhpD family Rpic_3957 216092 - 216541 + | GCN5-related N-acetyltransferase Rpic_3958 216538 - 217164 + | NAD(P)H dehydrogenase (quinone) Rpic_3959 217877 - 217230 - | pyrrolidone-carboxylate peptidase TERM 163 217946 - 217931 - R 95 -11.8 -4.72272 | opp_overlap 217929 217925 TTTTCCGATCAAAAA GGCGGC AATG GCCGCC CCGTTTGTCTTACGT Rpic_3960 218375 - 217956 - | transcriptional regulator, MarR family Rpic_3961 220059 - 218461 - | hypothetical protein TERM 164 220104 - 220083 - H 71 -9.4 -3.76125 | opp_overlap 220071, overlap 220071 220084 TCAGGCGAAGCGAAA CGTGGCGC CATTGT GCGCCACA CCCATTGTTACAGGC TERM 165 220377 - 220391 + G 70 -7.8 -3.99324 | overlap 220359 GCGTTCGACGACGCG GGTGTC TCG GGCACC TTTGTACTGATGGAC Rpic_3962 220251 - 221066 + | Beta-lactamase TERM 166 221631 - 221604 - g 73 -9.8 -3.9392 | gap 1, overlap 221601 GCTGACGGCAAACAA CGGCACGC-TGAC CTT GTCGCGCGCGCCG GGGGTGGAACCAGCG Rpic_3963 221233 - 221676 + | hypothetical protein TERM 167 221701 - 221684 - T 100 -14.1 -4.90869 | opp_overlap 221684 ACCAGTAATGAAAAA GGCGGGG GAAT CCCCGCC TTGTTTGTGGACCGC TERM 168 221684 - 221701 + T 95 -14.1 -4.06419 | opp_overlap 221684 ACCAGTAATGAAAAA GGCGGGG GAAT CCCCGCC TTGTTTGTGGACCGC Rpic_3964 223341 - 221728 - | periplasmic glucan biosynthesis protein MdoG TERM 169 221834 - 221818 - G 72 -3.6 -4.71061 | ATCCACACGCAAAAA CAGCCG CATGT CGACCG GTTCCTTCCCGTCGA TERM 170 223242 - 223225 - G 76 -2.5 -4.90778 | overlap 223226 223227 CGCATCGAAAGAAAA CGGCGCG GCAT CGCCCAG CTTGACGCGATCGGC Rpic_3965 223539 - 224681 + | beta-lactamase Rpic_3966 225191 - 224712 - | Domain of unknown function DUF1854 Rpic_3967 227511 - 225205 - | ABC transporter related TERM 171 226333 - 226348 + g 75 -7.5 -4.25104 | opp_overlap 226333 GTTGGCCTCGGCAAA GCGCG TCACCT CGCGC TTTTCCTGCGCAAAG TERM 172 228687 - 228645 - g 71 -10.4 -3.6106 | overlap 228646 228676 GCGAAGAGGTGGAAA CCGCTTACGCCGTGGCCATC GAG GAAGGCAACGGCGTGATCGT CGAGCGCTTCGTCTC TERM 173 228686 - 228646 - g 71 -13.9 -2.76315 | overlap 228645 228676 CGAAGAGGTGGAAAC CGCTTACGCCGTGGCCATC GAG GAAGGCAACGGCGTGATCG TCGAGCGCTTCGTCT TERM 174 230360 - 230378 + G 72 -8.8 -4.14243 | overlap 230353 230361 GCGCTCTCGCAGGTC ACAGCAGG CGA CCTGCTGG TTTTGCAATGCGATG Rpic_3968 227801 - 230461 + | cyanophycin synthetase TERM 175 232411 - 232437 + G 86 -13 -3.91897 | CCGACCCTGGCGCTG CACCGCGCGC AGGGCAA GCGCGTGGTG TTTGTCGATGGCCCC Rpic_3969 230515 - 233082 + | cyanophycin synthetase TERM 176 233084 - 233116 + F 100 -9.9 -5.3658 | opp_overlap 233090, overlap 233085 233090 GGGTTGCTGAGTAGA TTAGAACCCCGGTGA ACT TCGCTGGGGTTTTGG TTTTGTTTTTGTGGT TERM 177 233085 - 233115 + F 80 -11.2 -3.79508 | opp_overlap 233090, overlap 233084 233090 GGTTGCTGAGTAGAT TAGAACCCCGGTGA ACT TCGCTGGGGTTTTG GTTTTGTTTTTGTGG TERM 178 233090 - 233110 + F 100 -11.1 -4.83677 | opp_overlap 233090, overlap 233085 233084 CTGAGTAGATTAGAA CCCCGGTGA ACT TCGCTGGGG TTTTGGTTTTGTTTT TERM 179 233255 - 233294 + F 74 -3.7 -4.7497 | gap 2 TCTGTCGCAGGGAGG GGAAGGGAAAAACTCGCTG CGCT CAGACAG-TTT-CCCTTCC TTTTTCCTCCCTGCA TERM 180 233392 - 233357 - f 84 -6 -4.90471 | opp_overlap 233390, overlap 233361 233390 AGTCAAAAGACAAAA GCCACACCCTCTGGGC GCCA GCCCAAACGACAAGGC CAACCGCGCGACGGG TERM 181 233390 - 233413 + F 100 -13.2 -4.45771 | gap 1, opp_overlap 233357 233390 CAGCCCAAACGACAA GGCCAACCGCG CGA CG-GGTTGGCC TTTCTCTTTTGACGT TERM 182 233413 - 233390 - f 88 -13.2 -3.60865 | gap 1, opp_overlap 233390, overlap 233357 CAGCCCAAACGACAA GGCCAACCGCG CGA CG-GGTTGGCC TTTCTCTTTTGACGT TERM 183 233539 - 233561 + F 78 -4.8 -4.78981 | gap 1 ACACAAATTCAAGGG GGTGTCGCC ATCTCG GGCG-CGCC TTTCTTTTGCTTACT Rpic_3970 233728 - 234309 + | flavin reductase domain protein FMN-binding Rpic_3971 234306 - 234818 + | GCN5-related N-acetyltransferase Rpic_3972 235831 - 234815 - | transcriptional regulator, AraC family Rpic_3973 235997 - 237130 + | acyl-CoA dehydrogenase domain protein Rpic_3974 237192 - 238886 + | AMP-dependent synthetase and ligase Rpic_3975 238959 - 240506 + | methylmalonate-semialdehyde dehydrogenase Rpic_3976 240526 - 241419 + | 3-hydroxyisobutyrate dehydrogenase Rpic_3977 241419 - 242216 + | Enoyl-CoA hydratase/isomerase TERM 184 242706 - 242716 + G 77 -4.6 -4.60487 | overlap 242698 242714 TTCTGCCCGACGTGG GTGC TAC GCGC TTTTTGAGCGTGATG TERM 185 243271 - 243309 + G 70 -5 -4.4009 | overlap 243270 243272 CCCTGGCTGGGCGCC CGCCACGCTCCCGCAGGT GCG GCCTGAGCGGGTGCGGCA TTTTCTGACGTCGCC Rpic_3978 242213 - 243364 + | Enoyl-CoA hydratase/isomerase TERM 186 243517 - 243535 + F 100 -16 -5.75342 | CACGTTCTCATCGTA CGCAGCGG CTT CCGCTGCG TTTTTTTTGCCCAGC TERM 187 243758 - 243781 + G 73 -9.6 -3.83205 | gap 1 ATGAAGGTGTATCAG GGCG-ACAGCG CGG TGCTGTTCGCC TTTGATGTGGCCGAT TERM 188 244810 - 244843 + G 89 -13.1 -4.08767 | gap 1 CGACTGGCAGGCAGT GCCGCAGGGCAGCACG CCG CGTGC-GCGCTTCGGC TTTTCACCGCATCAG Rpic_3979 243716 - 245485 + | hypothetical protein Rpic_3980 247006 - 245513 - | AMP-dependent synthetase and ligase TERM 189 247243 - 247271 + H 78 -5.2 -4.82901 | gap 1, opp_overlap 247244, overlap 247244 TGCCTGAAGCCAAAA AGCCCGCC-CG GTGTGATG CGAGGCGGGCC TTTTTCTCGGGCGCG TERM 190 247270 - 247244 - H 100 -8.7 -4.74103 | gap 1, opp_overlap 247244 247243 GCCTGAAGCCAAAAA GCCCGCC-CG GTGTGATG CGAGGCGGGC CTTTTTCTCGGGCGC Rpic_3981 247489 - 248769 + | Chloride channel core Rpic_3982 249518 - 248808 - | transcriptional regulator, IclR family TERM 191 249671 - 249681 + H 74 -3.2 -4.7497 | AGTAAAACATCACAG TCTG AGG CAGG TTTTTCATGAGTACC Rpic_3983 249688 - 250386 + | Dimethylmenaquinone methyltransferase TERM 192 250683 - 250705 + G 74 -14.8 -2.62184 | GGCATTGCGGTGCGT GCCGCGGTGG GGG CCAACGCGGC TGCTGTGGCCGAGCA Rpic_3984 250386 - 251336 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_3985 251336 - 252292 + | SMP-30/Gluconolaconase/LRE domain protein Rpic_3986 252355 - 253719 + | major facilitator superfamily MFS_1 Rpic_3987 253796 - 255121 + | major facilitator superfamily MFS_1 Rpic_3988 255157 - 255753 + | amidohydrolase 2 Rpic_3989 257926 - 255986 - | peptidase S8 and S53 subtilisin kexin sedolisin TERM 193 258110 - 258097 - R 73 -9.5 -3.98083 | GATTCAACGGAGAAA GCGGC TGCG GCCGC GAACCGGTCCGGCCG Rpic_3990 259235 - 258219 - | transcriptional regulator, AraC family Rpic_3991 260840 - 259323 - | diguanylate cyclase Rpic_3992 261135 - 261329 + | hypothetical protein TERM 194 261464 - 261438 - f 89 -10.7 -4.52589 | overlap 261407 261454 CGGGTCGAGAGAAAA CCGGCGCGCGC GACAA GCCCGTGCCGG TAGGCCAGGCTCCAA TERM 195 262503 - 262547 + G 71 -12.1 -3.21276 | gap 2, overlap 262501 CCGTCATCCTTCTGG GCTGCAGCGGCCAGGCGCCGC CGGCC GAGGTGC-TGGCCGC-GCTGC TGTTCTACCGCGCCA TERM 196 264163 - 264128 - g 72 -8.2 -4.06562 | gap 1 AATTTCAAGGACAAA TTCGAGCCGGT-GTGGG AAG CCCGCTACCTGCTCGCA CGTGGCGGTATCGCG Rpic_3993 261614 - 264247 + | protein of unknown function DUF470 TERM 197 264415 - 264394 - g 71 -9.4 -3.70902 | gap 1, opp_overlap 264389 264399 GCGCCTACATCCAAA CCGACGCCC GTGCA GGGCG-CGG TGCTGGTTCCTCCCG Rpic_3994 264244 - 266010 + | virulence factor family protein Rpic_3995 267791 - 266070 - | sulphate transporter TERM 198 267370 - 267349 - G 74 -11.5 -3.66356 | overlap 267350 AGCCCGAACGTGAAA CCGCGCAGC ACCG GCCGCGCGA TGAAATCCGACATGC TERM 199 267851 - 267819 - R 88 -19.2 -2.64155 | gap 1, opp_overlap 267817, overlap 267816 267815 TCCGGCTGAAATGGA CG-ACGCCGCGACCC GGGC GGGCCGCGGCGTACG GGTTGGCTGCAGGCG Rpic_3996 268422 - 267871 - | putative alanine-rich signal peptide protein TERM 200 268193 - 268215 + g 72 -6.9 -4.30719 | overlap 268166 268186 GCTGCGGGCGCGGCA GCCGGAGCA CCGCC TGCGCTGGC TTTCTTGTCGACACC Rpic_3997 269558 - 268632 - | transcriptional regulator, MarR family Rpic_3998 269671 - 270432 + | short-chain dehydrogenase/reductase SDR TERM 201 270772 - 270749 - g 85 -7.4 -4.67982 | gap 1, overlap 270751 GCCCACTGAAGAAAA CCGCCTTCTGC TGC GC-GAAGGCCG AAAGATCGTCGAGGC Rpic_3999 270729 - 271370 + | YheO domain protein Rpic_4000 271367 - 272344 + | Pyridoxal-5'-phosphate-dependent protein beta subunit Rpic_4001 272341 - 272730 + | Endoribonuclease L-PSP TERM 202 272833 - 272816 - f 74 -6.9 -4.38712 | GCCATTGTTACAAAA TGGCGGG CGTA CCTGCCA AGGCATTTGCCTTGG Rpic_4002 272882 - 273763 + | type IV pilus assembly PilZ Rpic_4003 274652 - 273768 - | transcriptional regulator, LysR family TERM 203 274799 - 274787 - g 70 -2.6 -4.62471 | AAGTCATACAGAAAA CGCC AGCTG AGCG CCTTGTGCATGCGCT Rpic_4004 274768 - 275205 + | transmembrane pair domain protein TERM 204 275277 - 275311 + F 91 -19.3 -3.20723 | opp_overlap 275279, overlap 275279 TGAAGTCCCTTTCGA AACGGGCGCAGCGGT CGCAA GCCGCTGCGCCCGTA TTGCCTTCATGCCGC TERM 205 275309 - 275279 - f 100 -21.2 -3.53343 | opp_overlap 275277 275279 AAGTCCCTTTCGAAA CGGGCGCAGCGG TCGCAAG CCGCTGCGCCCG TATTGCCTTCATGCC TERM 206 275279 - 275309 + F 100 -21.9 -3.16676 | opp_overlap 275279, overlap 275277 AAGTCCCTTTCGAAA CGGGCGCAGCGGT CGCAA GCCGCTGCGCCCG TATTGCCTTCATGCC TERM 207 275645 - 275673 + G 72 -11 -3.53224 | gap 1, opp_overlap 275636 275659, overlap 275658 AACCCATGCAGCATG GTGCGGC-GCCAC AAGC GTTGCTGCCGCAC TTTGCGCAAGCACTG Rpic_4005 275320 - 275961 + | transcriptional regulator, LuxR family Rpic_4006 276197 - 275979 - | hypothetical protein Rpic_4008 277290 - 276892 - | hypothetical protein TERM 208 277026 - 277049 + g 71 -10.2 -3.64822 | gap 1, overlap 277027 CCAGCATGTCGAGCA GGCGCG-CGGC ATC GCCGTCGCGCA TTTCGGTGCGGAAGT TERM 209 277027 - 277048 + g 73 -13.7 -2.78679 | gap 1, overlap 277026 CAGCATGTCGAGCAG GCGCG-CGGC ATC GCCGTCGCGC ATTTCGGTGCGGAAG Rpic_4009 278354 - 277326 - | putative periplasmic substrate-binding transmembrane protein TERM 210 278392 - 278421 + r 70 -3.3 -4.68511 | overlap 278396 TTGGTGGTGCATCCT GGGTTTCGTCCCC TGCC GGGGCCGACTCAC TTTCTTTGTCTTGCC Rpic_4010 279554 - 278658 - | binding-protein-dependent transport systems inner membrane component Rpic_4011 280338 - 279544 - | ABC transporter related Rpic_4012 281117 - 280395 - | transcriptional regulator, GntR family TERM 211 281199 - 281236 + r 100 -25 -4.57073 | gap 1, opp_overlap 281199 GGCATTACAGGAAAA CCCGCAGGGCCCG-GTC AGATC GACACGGGCCCTGCGGG TTTTTGGGAGGACTG TERM 212 281236 - 281199 - R 100 -25.7 -4.371 | gap 1, opp_overlap 281199 GGCATTACAGGAAAA CCCGCAGGGCCCG-GTCA GAT CGACACGGGCCCTGCGGG TTTTTGGGAGGACTG Rpic_4013 283540 - 281264 - | putative nitric oxide reductase (subunit B) transmembrane protein Rpic_4014 283863 - 283573 - | hypothetical protein TERM 213 283914 - 283896 - H 70 -3.1 -4.72272 | opp_overlap 283896, overlap 283898 GTGTCGCATCAAAAA GATGCAT TAAGG ATGCAAC TATATTAGTGAGTGA Rpic_4015 284137 - 285636 + | nitrite reductase, copper-containing Rpic_4016 285653 - 286444 + | protein of unknown function DUF323 Rpic_4017 286441 - 287025 + | electron transport protein SCO1/SenC TERM 214 287010 - 287040 + T 77 -15.3 -2.77547 | overlap 287004 287004 GATGCGCAAGCTGGT GGCGGCGCAGCGC TAAGC GCGCCGCGCCGCA TACTTAGGCTTTGGT Rpic_4018 287892 - 287044 - | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase Rpic_4019 288656 - 287889 - | transcriptional regulator, GntR family Rpic_4020 288887 - 290194 + | major facilitator superfamily MFS_1 TERM 215 290336 - 290297 - f 78 -9.8 -3.96842 | ACGTCAACATAACAA GCAAGCTCCGATGCCCGC TGCT GCGCGCGCCGGGGCCTAC AAACCACGAAGAAGA TERM 216 290431 - 290401 - g 72 -13.3 -3.09834 | overlap 290403 CACGCCATCATCCAA CACGGCGCTGGAA CCCAT TACCAGCGCCATG GTGAGCGGCCTGCCC Rpic_4021 290357 - 291085 + | Asp/Glu/hydantoin racemase TERM 217 291451 - 291425 - g 72 -11.5 -3.53012 | opp_overlap 291435, overlap 291409 291426 GGCGGCTCGCTGAAA GCGGCGGTGGC CGACT ACCACCGCCGT GCCGAGGGCCGGGCG TERM 218 291450 - 291426 - g 75 -15 -2.71712 | opp_overlap 291435, overlap 291425 291409 GCGGCTCGCTGAAAG CGGCGGTGGC CGACT ACCACCGCCG TGCCGAGGGCCGGGC Rpic_4022 291107 - 292522 + | dihydropyrimidinase Rpic_4023 292553 - 293290 + | Asp/Glu/hydantoin racemase Rpic_4025 293872 - 293705 - | putative linoleoyl-CoA desaturase Rpic_4026 294670 - 293966 - | cyclic nucleotide-binding protein TERM 219 294519 - 294543 + g 87 -6.3 -5.02074 | overlap 294523 AACGTGTTTTTCGGG CAGATGCACGC GCC GCGTGCGTAGG TTTTTTCAACGATGC Rpic_4027 295298 - 294663 - | DSBA oxidoreductase TERM 220 295193 - 295215 + g 71 -12 -3.29144 | GCACGAGCGGACGCG GGCGGATGAC GAT GTCGTTCGCC TTCTGCAGCGCGTCG Rpic_4028 295982 - 295308 - | 3-oxoacid CoA-transferase, B subunit Rpic_4029 296775 - 296011 - | coenzyme A transferase TERM 221 296960 - 296925 - H 80 -3.8 -5.10208 | gap 1, opp_overlap 296926 296947 296948, overlap 296926 CAACGTGAATAAAAA TCCGCGCCG-CCGTTGT CGC ACCAGGGCCGGCCCGGC CCCTTTCGCTTTCCC TERM 222 296947 - 296963 + H 71 -9.3 -3.84719 | opp_overlap 296926 296925, overlap 296948 CGCCGTTGTCGCACC AGGGCCG GCC CGGCCCC TTTCGCTTTCCCGCT TERM 223 296948 - 296962 + H 70 -12.8 -2.90349 | opp_overlap 296926 296925, overlap 296947 GCCGTTGTCGCACCA GGGCCG GCC CGGCCC CTTTCGCTTTCCCGC TERM 224 297823 - 297862 + G 71 -10.7 -3.63782 | gap 1, opp_overlap 297822, overlap 297823 297826 297828 CGAGTCCGAATTCAG T-CAGCGCGCGGCGGAAG AGTCG CTGCCGCTGCGCGATGCA TTTGCGGTGCTGTTC Rpic_4030 297014 - 298231 + | sodium/hydrogen exchanger Rpic_4031 298275 - 298829 + | NADPH-dependent FMN reductase TERM 225 298854 - 298886 + T 100 -17 -4.35524 | overlap 298855 CGACCGGGGTGTTCA TGGCCGGGCGGGGA AGGGA TTCCCGCTCGGCCG TTTTGCCTTTAGGGC TERM 226 298855 - 298885 + T 90 -18.3 -3.20832 | overlap 298854 GACCGGGGTGTTCAT GGCCGGGCGGGGA AGGGA TTCCCGCTCGGCC GTTTTGCCTTTAGGG Rpic_4032 300083 - 299241 - | hypothetical protein Rpic_4033 300214 - 300921 + | GCN5-related N-acetyltransferase Rpic_4034 302544 - 300931 - | putative transmembrane protein TERM 227 301540 - 301585 + g 80 -15.3 -3.05844 | opp_overlap 301521, overlap 301518 GGCGCTGCGCAGTTC TGCGGCCAGGGCCTCGCGGGT ATTC AACTGCGTGGCCATGGTCGCG TATTCGCCTCCGGGC Rpic_4035 303215 - 302703 - | hypothetical protein Rpic_4036 303474 - 304295 + | ABC transporter related Rpic_4037 304279 - 305109 + | binding-protein-dependent transport systems inner membrane component Rpic_4038 305143 - 306147 + | NMT1/THI5 like domain protein TERM 228 306255 - 306202 - g 71 -13 -2.97245 | gap 2, overlap 306221 CCACCCAGAACGAGA CCACGCCCG-CCGCCAACGAG-GGCG ATGC CGCCACGCCGGGGCAGTCGGGCGTGG CTGCGCTGGACCGCG Rpic_4039 306168 - 306962 + | transcriptional regulator, IclR family Rpic_4040 307034 - 308221 + | L-carnitine dehydratase/bile acid-inducible protein F Rpic_4041 308224 - 309078 + | citrate synthase TERM 229 309187 - 309177 - g 72 -8.2 -4.15044 | TCCCGCGCCAATAAA GGCG GCG CGCC GGTCGATTGCTTTCT Rpic_4042 309075 - 309971 + | SMP-30/Gluconolaconase/LRE domain protein TERM 230 309979 - 310002 + F 72 -11 -3.41229 | overlap 309958 ACGACTGACGGCACA CGTGGGCTGT TGCT GCAGCTCACG TTGTCCTACAGCTGT TERM 231 310402 - 310414 + F 74 -6.3 -4.43877 | TTTTGGAGACTTTAG GCAAT TTA ATTGC TTTCTTTCGGCATTC TERM 232 310578 - 310588 + F 71 -8.2 -4.0825 | opp_overlap 310565 CACCCCTCCGACGTA GGGG TCC CCCC TTCTTTACTTACCCC Rpic_4043 310832 - 311149 + | flagellar transcriptional activator TERM 233 311388 - 311400 + G 76 -9.1 -4.08216 | overlap 311394 GGAATCGCCGCCCAA GGGCA TGC TGCCC TTTTCGGCAGACTGG TERM 234 311747 - 311736 - g 88 -2.2 -5.33405 | gap 1, overlap 311730 CGCAGGAAAGAAAAA GC-GC GTC GCTGC TCCGGTTGATGCGAT Rpic_4044 311227 - 311787 + | flagellar transcriptional activator FlhC TERM 235 312006 - 312034 + F 100 -3.8 -5.75342 | overlap 312007 AAGGGGAAGGGGGTA GGCCGGTCACG-GG AAA CTGCG-GACCGGCA TTTTTTTTGCCGCCG TERM 236 312086 - 312109 + F 100 -15.4 -5.30616 | opp_overlap 312083 AAAGGCGAAAAGTGG GGGACGGAAA GCGA TTTCCGTCCC TTTTTCTTTGGATCA TERM 237 312150 - 312171 + F 89 -10.8 -4.68705 | ACGGCCTCTTTGAGC CGGGTGGC GCTCAA GCCGCCCG TTTTGTTGCCGTTCT TERM 238 312252 - 312240 - f 74 -6.9 -4.30576 | opp_overlap 312244 TGCGCAGCAGCAAAA CCAGG GGC CCCGG CCTTCAGTTAACCGG TERM 239 312267 - 312286 + F 75 -8.6 -4.23674 | GCCTTCAGTTAACCG GGGGAATG CCGA TATTCCCC TTTGTATTGATCGAA TERM 240 312516 - 312483 - g 82 -3.7 -4.98255 | opp_overlap 312504, overlap 312485 CGGCAACGACAAAAA GGCCATCAACGCC ACCGTCAA GGCGCTGCCGGGC CTGTTCAAAGGCTCG Rpic_4045 312328 - 313188 + | flagellar motor protein MotA TERM 241 313452 - 313440 - g 70 -4.7 -4.44667 | CGGCGCAACAAGAAA GGCGG ACA CGGCC ACCACGGTGGCGCGT TERM 242 313496 - 313508 + G 71 -9.1 -3.75738 | CGCCGACTTCGTGAC CGCCA TGA TGGCG TTCTTCCTGCTGATG Rpic_4046 313389 - 314336 + | OmpA/MotB domain protein Rpic_4047 314362 - 314775 + | response regulator receiver protein Rpic_4048 314794 - 316968 + | CheA signal transduction histidine kinase Rpic_4049 317049 - 317540 + | CheW protein TERM 243 317812 - 317776 - g 72 -13.5 -3.05844 | TGCGGCACGCCAACA CCCGCGTGCAGGACGGC TAT GCCGTGCAGCTGGCGGG CACCGTGGCATTGGC TERM 244 318440 - 318397 - g 80 -12.5 -3.72695 | gap 3 ATCGCGCCGATGAAA CCGGCCG-CCTGC-TGCGC-GC ACT GCAGCGCATGCAGGACAGCCTG CAGAAGATGGTGGGG TERM 245 318751 - 318733 - g 84 -6.6 -4.73613 | opp_overlap 318734, overlap 318734 CCAGCAGCAAGAAAA TCGCCGAC ATC ATCGGCGT GATTGAAGGCATTGC TERM 246 319386 - 319345 - g 81 -16.5 -2.53015 | ACACCGCTGAACCCA TCGCGCAGACCGGGGCTGC AACT GCAGCGCCGGCCTCCGCCA AGGAACAACAACGCG Rpic_4050 317664 - 319511 + | methyl-accepting chemotaxis sensory transducer TERM 247 319575 - 319592 + F 100 -12.7 -6.11644 | GTTTGTGGTGTGCAG CCTGCCC TCCG GGGCAGG TTTTTTTTTGCCTGG TERM 248 319764 - 319782 + G 74 -5.3 -4.4891 | gap 1, overlap 319757 319767 AGCGTTTGCCGGTGT CCA-CGGT ACTC ACCGGTGG TTTTCTGATCGTGGC Rpic_4051 319736 - 321640 + | methyl-accepting chemotaxis sensory transducer TERM 249 321780 - 321794 + G 90 -11.4 -4.4078 | overlap 321771 CCAGTTTCGCCGACG CTCGCG TCG CGCGAG TTTTCATTCACCGCC TERM 250 321989 - 321963 - g 79 -5.6 -4.62783 | opp_overlap 321963 GATGCACTGGAAAAA GGCCACCTGCCC GAC GAGTGGGAGGCC TTTACCAACGCGCTG TERM 251 322389 - 322442 + G 70 -11.1 -3.34398 | gap 1, opp_overlap 322377, overlap 322387 AACCTGCTCGACCGC GATTGGC-CGTTGCAGCAGAAGTTCG ACG TGATCTTCTGCCGCAACGTGATGATC TATTTCGACAAGCCC Rpic_4052 321744 - 322625 + | MCP methyltransferase, CheR-type TERM 252 323248 - 323236 - g 76 -9.1 -4.07568 | GCTGCGCTCGCAAAA CTCGG CGG CCGAG CTGGACAGCGAGGCG Rpic_4053 322622 - 323332 + | CheD TERM 253 324396 - 324382 - g 70 -11.4 -3.34895 | GGCATGCCCAAGGAA GCCGTG GCC CACGGC GGCGTGCACGAAGTC Rpic_4054 323356 - 324483 + | response regulator receiver modulated CheB methylesterase Rpic_4055 324633 - 325034 + | response regulator receiver protein TERM 254 325438 - 325428 - g 85 -4.6 -5.00616 | GCGTTCCTGAAAAAA CGCG CGA CACG AACCAGCAACTCATG TERM 255 325491 - 325441 - g 74 -12.8 -3.26319 | gap 1, opp_overlap 325448, overlap 325448 325458 AACGCGCGACACGAA CCAG-CAACTCATGGAAATCCTG ATGGCG CAGGACTTCCAGGACTTGACTGG CCAGGTGATCAAGAA Rpic_4056 325034 - 325702 + | chemotaxis phosphatase, CheZ TERM 256 325710 - 325742 + T 80 -12 -3.78934 | gap 1, overlap 325714 GCTTCTGAACCTGCG TTGCCTGGCCCTCGC AGTC GCGAGGGCC-GGTAC TTCTTCTGCCGAACC TERM 257 325714 - 325739 + T 89 -18.3 -2.98545 | overlap 325710 CTGAACCTGCGTTGC CTGGCCCTCGC AGTC GCGAGGGCCGG TACTTCTTCTGCCGA Rpic_4057 326818 - 325778 - | ApbE family lipoprotein Rpic_4058 327245 - 326823 - | cytochrome c class I TERM 258 327999 - 327981 - g 72 -11.6 -3.44274 | overlap 327975 CAACGACAAGATCAA CTCGCGCC TGG GGCGCGTG CGGCTCGACTACTTC TERM 259 328910 - 328874 - g 71 -12.9 -2.94412 | opp_overlap 328874 328873, overlap 328871 CGCAATCCGAAACCA TGGCCGCCGACGGCAAG TTC CTCGCCGTGGGCTGCAA GTTCTCCAAGGACCG Rpic_4059 327484 - 329433 + | Nitrous-oxide reductase TERM 260 329474 - 329446 - f 76 -13 -3.41051 | overlap 329447 TGATTCCGAGGAGAA GCGCGCGTGCCC CGTGC GGGCCCGCGCGT GCCGATGAACTCCAA TERM 261 329473 - 329447 - f 78 -16.5 -2.64416 | overlap 329446 GATTCCGAGGAGAAG CGCGCGTGCCC CGTGC GGGCCCGCGCG TGCCGATGAACTCCA Rpic_4060 329452 - 332115 + | FMN-binding domain protein Rpic_4061 332112 - 333407 + | periplasmic copper-binding TERM 262 333854 - 333868 + G 83 -5.6 -4.87665 | overlap 333852 CGCAGGCGCTGTTGG GTGCGC CAC GCGTGC TTTTTCTGGATGAGC Rpic_4062 333385 - 334341 + | ABC transporter related Rpic_4063 334338 - 335162 + | putative NosY transmembrane protein Rpic_4064 335159 - 335689 + | NosL family protein Rpic_4065 335692 - 336294 + | hypothetical protein TERM 263 336385 - 336395 + F 73 -4.6 -4.59853 | opp_overlap 336379 336380 TGTCGATAAGCCGGC CCGG AAG CTGG TTTTTCGGCGCTTCG TERM 264 336543 - 336516 - g 85 -4.8 -5.03314 | gap 1, overlap 336501 336517 336524 GCGATCTCGAAAAAA CCGAACCAGCCTC TCC GAGGC-GCCTCGA GCAGGCGCGCGAGGA Rpic_4066 336488 - 337651 + | flagellar biosynthetic protein FlhB TERM 265 337710 - 337674 - f 79 -12.9 -3.44848 | opp_overlap 337696 337697 337698, overlap 337672 CCCGCCGAGTAAAGA GCTCCACGCGCCGAGCT CCG AGCTCGGATCGCCGAGC AAAAAGCATCGCCCT TERM 266 337731 - 337716 - f 74 -3.2 -4.7254 | opp_overlap 337698 337697 337696 ATCGCCGAGCAAAAA GCATCG CCCT CGACAC TTTTTGCATGGCGAA TERM 267 337851 - 337867 + F 82 -11.5 -3.92602 | opp_overlap 337851 GTATTCCAAAGAAAA GCCGCCT TTT GGGCGGC TTTCTCACGTCTTCG TERM 268 337867 - 337851 - f 100 -10.8 -4.88918 | opp_overlap 337851 GTATTCCAAAGAAAA GCCGCC TTTTG GGCGGC TTTCTCACGTCTTCG Rpic_4067 337945 - 340071 + | flagellar biosynthesis protein FlhA Rpic_4068 340068 - 341966 + | GTP-binding signal recognition particle SRP54 G- domain TERM 269 342355 - 342337 - g 82 -6.6 -4.67982 | overlap 342338 342339 CGCTACTCAAGAAAA CCGCCGTG CTG CAAGGCAG CGCTGGCATCCGCAC Rpic_4069 341982 - 342773 + | hypothetical protein Rpic_4070 342782 - 343543 + | RNA polymerase, sigma 28 subunit, FliA/WhiG TERM 270 343639 - 343669 + F 100 -16.9 -5.27335 | gap 1 CCAGGTATTTCTACT GCGCGGTCAGCGAC TCAT GTCGC-GGCCGCGC TTTTTCTTTGGGGCC TERM 271 343806 - 343794 - f 77 -3.3 -4.96848 | TTGTTGACAGAAAAA TGGCG CCC CTCCA AGATTCCGGCAAATA Rpic_4071 343922 - 345349 + | xanthine permease Rpic_4072 346460 - 345378 - | Aldose 1-epimerase Rpic_4073 347680 - 346457 - | transcriptional regulator, AraC family TERM 272 348149 - 348139 - g 75 -3.2 -4.82901 | GCCGCTGCAGAAAAA CTGG GTG CCAA GGTGTCGGTGCAATC Rpic_4074 347950 - 348978 + | D-xylose ABC transporter, periplasmic substrate-binding protein Rpic_4075 349060 - 350613 + | D-xylose ABC transporter, ATPase subunit Rpic_4076 350616 - 351818 + | Monosaccharide-transporting ATPase Rpic_4077 351865 - 352632 + | short-chain dehydrogenase/reductase SDR TERM 273 353483 - 353504 + G 71 -8 -4.07568 | overlap 353470 GGTCAGAGGGCTCCC GTCCACGG ATTGTG CTGTGGAC TTTTCCGCAGCGGCG Rpic_4078 352629 - 353534 + | SMP-30/Gluconolaconase/LRE domain protein Rpic_4079 354709 - 353525 - | hypothetical protein Rpic_4080 354849 - 355604 + | transcriptional regulator, IclR family TERM 274 356480 - 356513 + G 70 -11 -3.36452 | gap 1, opp_overlap 356480, overlap 356476 GGCGCCATCATGGAA TGCCACCG-GCGCGG TCTGT CCGTGCCCGGTGACA TTGCTGTTGGGGGCT Rpic_4081 355694 - 356710 + | transcriptional regulator, LacI family Rpic_4082 358516 - 356732 - | Dihydroxy-acid dehydratase Rpic_4083 358820 - 359359 + | hypothetical protein Rpic_4084 360023 - 359364 - | isochorismatase hydrolase Rpic_4085 360158 - 361153 + | transcriptional regulator, AraC family TERM 275 361181 - 361166 - T 100 -10.4 -6.34616 | opp_overlap 361166 TGAAAAGAAAAAAAA GCGGCT GGTC AGCCGC TGTGGTGTGTTGTTT Rpic_4086 361377 - 361195 - | 17 kDa surface antigen TERM 276 361449 - 361437 - R 76 -10.5 -3.74693 | CCTCAGTCGAGCAAA GCGCG TGC CGCGC TCACATGAACAGCGG Rpic_4087 362010 - 361450 - | protein of unknown function YGGT TERM 277 361745 - 361720 - G 79 -11.1 -3.86015 | GAGCGCGGCCACAAA GCCCATTGGCA CGAG TGCCATCGGGC TCACGCCCACCGACG TERM 278 362148 - 362165 + H 72 -2.6 -4.82901 | GCGCATTCGCGTATT GTGGTG CCCGTT CGCCGC TTTTTCTGCCAGGAG Rpic_4088 362188 - 362751 + | PEBP family protein Rpic_4089 363787 - 362801 - | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Rpic_4090 364178 - 363885 - | hypothetical protein Rpic_4091 365124 - 364165 - | PBS lyase HEAT domain protein repeat-containing protein Rpic_4092 365398 - 365132 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpic_4093 367125 - 365401 - | fumarate reductase/succinate dehydrogenase flavoprotein domain protein TERM 279 365669 - 365705 + g 71 -13.6 -2.7535 | overlap 365666 CTGACTTCCATCGCG CGCATCAGCTCGTGCG GGTTG CGCGCGTGCAGGTGCG TGATGTCTTCGGCAA TERM 280 367025 - 367041 + g 70 -5.8 -4.26461 | opp_overlap 367025 TCGATCAGCAGCACA CGCAGC GCAGG GTTGCG TTCTTTTGCCTTGAT Rpic_4094 367907 - 367122 - | transcriptional regulator, GntR family TERM 281 367431 - 367400 - G 95 -13 -4.32034 | gap 1 CCAGCACGAGGAAAA CATCGCGCGTGACGA GGT CCGCC-CGCGCGACG CTGCTGCCCAGCGGC TERM 282 368331 - 368313 - g 87 -3.7 -5.13521 | overlap 368316 AAACGATGCAAAAAA CGAGCGC TGCGT GCGCCAG ACGGACCGTATTGAC Rpic_4095 368303 - 369289 + | periplasmic binding protein/LacI transcriptional regulator Rpic_4096 369390 - 370967 + | ABC transporter related Rpic_4097 370964 - 372013 + | Monosaccharide-transporting ATPase TERM 283 373047 - 373017 - g 78 -15.4 -2.70932 | overlap 373019 GCGGCCGTCGAACGA GACGGCCAAGGACG CCC CGGCCTCGGCCATC CTCATGCAGTCGCAC Rpic_4098 372010 - 373083 + | Monosaccharide-transporting ATPase Rpic_4099 373130 - 373492 + | 3-dehydroquinate dehydratase Rpic_4100 374110 - 373541 - | hypothetical protein TERM 284 373748 - 373707 - G 71 -10.1 -3.64703 | gap 1 GGGTTGGCATCCAAA GCCTGC-TGCAGGTCATCCG GCA CGGTTGACGTACCCGCAGGC GAATAGGCCGCCTCC Rpic_4101 374573 - 374148 - | hypothetical protein TERM 285 374616 - 374641 + r 76 -7.5 -4.4891 | opp_overlap 374628 TATTCGTAGGCAATG GGCGCCGCA AAACAACA TGCGTCGCC TTTTCTGATGCTACG Rpic_4102 375258 - 374596 - | bifunctional deaminase-reductase domain protein Rpic_4103 375434 - 376357 + | putative exonuclease RdgC TERM 286 376461 - 376487 + T 90 -14.5 -3.54459 | GCCCGGCGCGCAGGT CGCTCTTGCGG ATGAG CTGCAAGAGCG TTTCCGCAGGCTTGC TERM 287 377017 - 377028 + T 71 -5.8 -4.42386 | ATCGATCGGAGGGGG GGCT TGTC AGCC TTTTCTCGGTCAAGC Rpic_4106 377714 - 377283 - | hypothetical protein Rpic_4107 378084 - 379184 + | branched-chain amino acid aminotransferase TERM 288 379591 - 379626 + G 73 -9.7 -3.85698 | gap 1, overlap 379589 GCAGCGTATCCGGGC CG-CTGCGCAGGCTTG ATTAC CGAGTCGGCGCAGGCG TTTGTGGAAGAGCAA Rpic_4108 379192 - 380004 + | alpha/beta hydrolase fold TERM 289 380144 - 380160 + F 84 -11.5 -4.08919 | TTTCCCGTCTTCAGA GGGCTGC CCG GCGGCCC TTTCGTTTGGAGTTT TERM 290 380566 - 380550 - g 71 -4.3 -4.58395 | opp_overlap 380539 CCGACGCTGGAAAAA CAGCGTT ACT ACCGCCG CATCGTCTACCTGGC Rpic_4109 380307 - 381470 + | Alkane 1-monooxygenase Rpic_4110 381743 - 381480 - | Cupin 2 conserved barrel domain protein TERM 291 381826 - 381809 - H 100 -12.7 -5.38054 | GCGCAGAAATAAAAA GACGGCC CGGA GGCCGTC GGAAATTCGGCTGTG Rpic_4111 381972 - 382871 + | transcriptional regulator, AraC family Rpic_4112 382967 - 383857 + | NmrA family protein Rpic_4113 383983 - 384768 + | hypothetical protein TERM 292 385328 - 385303 - g 71 -14 -2.70936 | overlap 385300 385295 TCATCAACGAGACGA CGGCACACCC GGAGCA GGGCGTGCCG TATGCGGTGTTCCGC Rpic_4114 384843 - 385367 + | conserved hypothetical signal peptide protein Rpic_4115 385879 - 385400 - | PEBP family protein Rpic_4116 386460 - 386098 - | protein of unknown function DUF1304 Rpic_4117 386646 - 387362 + | Carboxymethylenebutenolidase TERM 293 387518 - 387530 + F 93 -6.2 -5.47821 | overlap 387517 CGTATGGCCGGACGG CCGC CTCGT GCGG TTTTTTTACGTCCGT TERM 294 387716 - 387728 + F 70 -4.7 -4.48987 | overlap 387710 387708 TTGTGTTCGGCGGGC GTCGC CCC GCGTC TTTTCCTTCTCCACC TERM 295 387932 - 387953 + G 73 -9.3 -3.88291 | opp_overlap 387919, overlap 387933 CACGGGCGGCGCCTA TCCGCCCGC ATTC GCGCGCGGG TTTGTCGACATGATC Rpic_4118 387783 - 388055 + | hypothetical protein Rpic_4119 389701 - 388079 - | amine oxidase Rpic_4120 391278 - 389701 - | Spermine synthase TERM 296 391327 - 391347 + H 88 -6.8 -5.0133 | gap 1 AACGGCGGATGCCAA GGCGAGCGC GATT GTGC-CGCC TTTTTTCCCGGCCTG TERM 297 391500 - 391527 + G 74 -5.4 -4.51891 | overlap 391490 391507 CTATGCCTCGCACCT GCTGGCGGGCGC CGTG GTGTTCTCCGGC TTCTTTTTCGTCTAT TERM 298 391507 - 391530 + G 76 -2.2 -4.86133 | overlap 391490 391500 TCGCACCTGCTGGCG GGCGCCGTGG TGTT CTCCGGCTTC TTTTTCGTCTATCTG Rpic_4121 391456 - 391854 + | protein of unknown function DUF350 Rpic_4122 391904 - 392953 + | putative transmembrane protein TERM 299 392978 - 393000 + F 100 -13.4 -4.84017 | CGCTGATCGGATGAC CGGGCGGC ACCGCAA GCCGCCCG TTTTTCTGCGCCATT Rpic_4123 393041 - 394486 + | putative transmembrane protein Rpic_4124 394483 - 394671 + | putative serine-rich transmembrane protein Rpic_4125 394668 - 395093 + | S-adenosylmethionine decarboxylase proenzyme Rpic_4126 396141 - 395095 - | diguanylate cyclase with GAF sensor Rpic_4127 397627 - 396242 - | fumarate hydratase, class II TERM 300 398520 - 398576 + G 70 -11.4 -3.34398 | overlap 398500 398521 398538 TGGTGCTGCTGGTCT TCGGTCTGGCCGCACTCACCGCCT ATTGGCTGC ACGCGGGGCGTGTGGCCGGGCCGC TGTTTCCGCGCACGC TERM 301 398521 - 398575 + G 74 -14.9 -2.60496 | overlap 398500 398520 398538 GGTGCTGCTGGTCTT CGGTCTGGCCGCACTCACCGCCT ATTGGCTGC ACGCGGGGCGTGTGGCCGGGCCG CTGTTTCCGCGCACG TERM 302 398593 - 398608 + G 72 -6.8 -4.31085 | overlap 398582 GTTTCCGCGCACGCT GTTCGG TATT CCGAGC TTTTCCATTGGTGTG Rpic_4128 397763 - 399235 + | drug resistance transporter, EmrB/QacA subfamily Rpic_4129 401411 - 399261 - | UvrD/REP helicase TERM 303 401449 - 401434 - R 76 -6.2 -4.72201 | CGTCACAAAAAATAA CTGTAT GAAT ATACAG CACTGTGATGCCTGC Rpic_4130 401829 - 401512 - | hypothetical protein Rpic_4131 402308 - 401976 - | protein of unknown function UPF0060 Rpic_4132 402804 - 402391 - | PfkB domain protein Rpic_4133 403954 - 402932 - | GumN family protein TERM 304 403930 - 403913 - G 83 -5.5 -4.87626 | gap 1, opp_overlap 403926 CGTCAATAGGAAAAA CGCG-GCC GTG AGCGCGCG CCACGTGGTGCGATT Rpic_4134 405219 - 404038 - | hypothetical protein TERM 305 405748 - 405785 + G 72 -8.3 -3.95555 | gap 1, overlap 405754 GCCCGTGTATGCGCG CAGTGCGCTGCGCGTGGC CGG GTCGCGCGCGCCTC-CTG TTTCTCCGTCGTTGT Rpic_4135 405407 - 405808 + | putative transmembrane protein TERM 306 405809 - 405837 + F 71 -8.8 -3.75153 | gap 1, overlap 405810 405825 TCGTTGTCGATCTGA CGCGCCTGCGGAG GTTG CTCCGT-GGCGCC TTTGCGTTCGGCCCC TERM 307 405810 - 405836 + F 70 -12.3 -2.84878 | gap 1, overlap 405809 405825 CGTTGTCGATCTGAC GCGCCTGCGGAG GTTG CTCCGT-GGCGC CTTTGCGTTCGGCCC TERM 308 405941 - 405978 + G 72 -12.7 -3.06483 | gap 1, overlap 405966 TAAGCGCACGCTCGT GTGCCGC-GCTGCGCTCG CGC TGAGCGCAGCAGCACCAC TGTCTGCTTTCGCTG Rpic_4136 405891 - 408209 + | TonB-dependent receptor TERM 309 409010 - 409066 + G 75 -8.1 -4.21194 | gap 4, overlap 409028 CGCGTCGATGCGTGT CCGCACCATG-GCC-C-CG-CGTTGGCCG TTA CGGCCGATGGTGTGCGGCACATGGCGTGG TTTTCGGTGCTGCAA Rpic_4137 408197 - 409462 + | glycosyl hydrolase BNR repeat-containing protein Rpic_4138 409459 - 409965 + | putative signal peptide protein TERM 310 409978 - 410019 + T 75 -2.8 -4.91109 | opp_overlap 409977 409974, overlap 409977 409980 TAATCGGAAAACGAC GCGGACCCCCCTCGTTGT TGGGGT ATGGCGGGGGGCGTGCAC TTTTTATAATGGCCC TERM 311 410114 - 410139 + T 100 -11.7 -5.38054 | opp_overlap 410099 GGCTGAAGATGTTAA GCCCGCCCGCC CCCC GGCCCGCGGGC TTTTTCTTTGTCCGG Rpic_4139 410477 - 410199 - | hypothetical protein Rpic_4140 411253 - 410495 - | protein of unknown function DUF81 Rpic_4141 411384 - 412268 + | transcriptional regulator, LysR family Rpic_4142 412413 - 412934 + | putative transmembrane protein TERM 312 413127 - 413163 + G 71 -8 -4.18018 | gap 1, opp_overlap 413151 GCCGCGACTTTCTGC TCGCGCACCGTGAGGAT TACG ATAC-CGCTGTGCGCGA TTTTGCATGGCCCCA TERM 313 414333 - 414312 - g 78 -7.9 -4.4017 | gap 1, opp_overlap 414313, overlap 414287 414313 GTAACGCCGACAAAA CCGCCGAAGC CAT GCG-CGGCGG CGTGTATCACACCTC Rpic_4143 413084 - 414781 + | AMP-dependent synthetase and ligase TERM 314 414792 - 414848 + T 73 -13.6 -2.81547 | gap 1, opp_overlap 414810, overlap 414837 ATTGACCCGCGTTGA GCTTTGGCACCTACGGAACGTGCGGCC CCCC GACCGCACGTTCCGCTGC-GCCAGCGC TGATTGATATCAGCG TERM 315 414831 - 414810 - T 76 -13.7 -3.07816 | opp_overlap 414792 TTGGCACCTACGGAA CGTGCGGCC CCCC GACCGCACG TTCCGCTGCGCCAGC Rpic_4144 415199 - 414858 - | hypothetical protein Rpic_4145 415670 - 415470 - | hypothetical protein TERM 316 417132 - 417118 - g 70 -11.4 -3.30441 | opp_overlap 417117 417116, overlap 417099 CAGCATTCCGCAGAA GGCGCT GGC AGCGCC GATTTCGCCGACTGA Rpic_4146 416089 - 417147 + | putative signal peptide protein Rpic_4149 418930 - 418799 - | putative lipoprotein transmembrane Rpic_4150 419120 - 418995 - | hypothetical protein Rpic_4151 419356 - 419502 + | putative transmembrane protein TERM 317 419588 - 419562 - T 100 -15.9 -4.80167 | gap 1, opp_overlap 419562 CAGTAAAAACGAAAA CGGGCGCC-GCA TTGC TGCTGGCGCCCG TTTGGCATTGTGCGA TERM 318 419562 - 419588 + T 93 -15.9 -3.69354 | gap 1, opp_overlap 419562 CAGTAAAAACGAAAA CGGGCGCC-GCA TTGC TGCTGGCGCCCG TTTGGCATTGTGCGA TERM 319 419607 - 419638 + T 90 -19.5 -3.08996 | GGCATTGTGCGAGGC CGGTTGCGGCGCG TCCCGT TGCGCCGCAACCG TGTTCGCTCAGGCTG Rpic_4152 420272 - 419646 - | NAD(P)H dehydrogenase (quinone) Rpic_4153 420400 - 421347 + | transcriptional regulator, LysR family Rpic_4154 421438 - 423018 + | drug resistance transporter, EmrB/QacA subfamily Rpic_4155 423926 - 423030 - | hypothetical protein TERM 320 423137 - 423104 - G 81 -16.8 -2.53015 | gap 1 AGAGTGCCCAACGCA GCGTCGGC-GCCACG GTGCG CATGGCCGCCGACGC AAACGCCGCCTGCAG TERM 321 423157 - 423141 - G 74 -11.5 -3.64703 | overlap 423142 GGCCGCCGACGCAAA CGCCGCC TGC AGCGGCG GCCGCTTGAGATCAA TERM 322 424231 - 424215 - g 75 -12.3 -3.48276 | opp_overlap 424196 GCGCGCGGCAGACAA CGCGCAA GGT TTGCGCG ACAAATACCAGAGCG Rpic_4156 424111 - 425040 + | putative signal peptide protein Rpic_4157 425476 - 425045 - | hypothetical protein Rpic_4158 426768 - 425737 - | cytochrome bd ubiquinol oxidase subunit II Rpic_4159 428138 - 426765 - | cytochrome bd ubiquinol oxidase subunit I Rpic_4160 428714 - 428154 - | hypothetical protein Rpic_4161 428923 - 429177 + | Transglycosylase-associated protein TERM 323 429234 - 429203 - f 82 -12.4 -3.61715 | gap 1, opp_overlap 429202 429201 CACCGGCGCCAAGAA CGGCGG-TGGATG CGCATGT CATCCAACCGCCG GATTTCAACATGCAC Rpic_4162 429339 - 429632 + | hypothetical protein TERM 324 429682 - 429713 + F 93 -15.1 -3.83026 | opp_overlap 429682 CGGTCATGCACGAGA TGCGCCGGTCGCC CTTGGC GGCGGCCGACGCA TTTGCTGTGCCGCAC TERM 325 429713 - 429682 - f 77 -15.1 -2.80816 | opp_overlap 429682 CGGTCATGCACGAGA TGCGCCGGTCGCC CTTGGC GGCGGCCGACGCA TTTGCTGTGCCGCAC TERM 326 429937 - 429987 + F 100 -14.7 -5.75945 | opp_overlap 429940 429941, overlap 429941 TCAGGGCTACTTGGA CAACGGCGTCCCAGACCCTGGCT AGTGC AGCCGGGCTCTCGGACGCCTTTC TTTTTTTTGGCCCCT TERM 327 429984 - 429940 - f 86 -14.9 -3.31144 | opp_overlap 429937 429941, overlap 429941 GGGCTACTTGGACAA CGGCGTCCCAGACCCTGGCTA GTG CAGCCGGGCTCTCGGACGCCT TTCTTTTTTTTGGCC TERM 328 429941 - 429983 + F 100 -19.9 -5.33985 | opp_overlap 429940 429941, overlap 429937 GGCTACTTGGACAAC GGCGTCCCAGACCCTGGCT AGTGC AGCCGGGCTCTCGGACGCC TTTCTTTTTTTTGGC TERM 329 429983 - 429941 - f 85 -18.4 -2.58544 | opp_overlap 429941 429937, overlap 429940 GGCTACTTGGACAAC GGCGTCCCAGACCCTGGCTA GTG CAGCCGGGCTCTCGGACGCC TTTCTTTTTTTTGGC TERM 330 430837 - 430880 + G 72 -11.7 -3.53224 | gap 2 TCGGCCTGTCGCTCT CGGCTGCCGGCATGGCCGCGG CCAG CTTCGGCC-TGCTGGC-GCTG TTTGCCCGCGCGCTG Rpic_4163 430017 - 431339 + | major facilitator superfamily MFS_1 TERM 331 431788 - 431747 - g 72 -12.9 -3.09834 | overlap 431749 431787 TATCGCACCATCGAA GACCTCGAAGCGATGGCCG AATG CGGCCAGCGCGCCAAGACC GGCGTCGTGATCGGC Rpic_4164 431354 - 433909 + | nitrite reductase (NAD(P)H), large subunit Rpic_4165 433936 - 434274 + | nitrite reductase (NAD(P)H), small subunit Rpic_4166 434314 - 435546 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 332 436889 - 436844 - g 74 -13.1 -3.24902 | gap 1, opp_overlap 436844 CAACAGCATCATCAA CTGCCACTTGCTCAC-CGGCCG CAT CGGCCGCGCGGGCATGGGGCCG TTTTCGATTACCGGA TERM 333 436844 - 436889 + G 95 -13.1 -4.27316 | gap 1, opp_overlap 436844 CAACAGCATCATCAA CTGCCACTTGCTCAC-CGGCCG CAT CGGCCGCGCGGGCATGGGGCCG TTTTCGATTACCGGA Rpic_4167 435846 - 438593 + | Nitrate reductase TERM 334 438625 - 438667 + F 100 -12.8 -4.33153 | opp_overlap 438641 CGCGCGACAGTTGCT TTCTGCCCGGGTAATATTGA CAC TCAATTAAACCCGGGTAGAA TTTGTTCCTGTTGAA TERM 335 438670 - 438697 + F 76 -9.2 -4.02022 | overlap 438671 AACCCGGGTAGAATT TGTTCCTGTTGA AACT TCAGCAGGAGCG TTTCTCATGGTTGCC Rpic_4168 438704 - 439318 + | hypothetical protein Rpic_4169 439315 - 440682 + | MATE efflux family protein Rpic_4170 442001 - 440739 - | major facilitator superfamily MFS_1 TERM 336 441741 - 441723 - G 72 -6.7 -4.27512 | gap 1, overlap 441720 CGCTACAACAAACAA GGCCA-GC GCGC GCATGGCC TCCGCGTCGGCCATC Rpic_4171 443527 - 442094 - | phospholipase D/Transphosphatidylase Rpic_4172 443713 - 445407 + | phospholipase D/Transphosphatidylase TERM 337 445443 - 445426 - T 100 -9.8 -5.45802 | opp_overlap 445426 GCTCCAAAAGAAAAA CGCCGC GAAGTT GCGGCG TTTCCTGACTCAGGC TERM 338 445426 - 445443 + T 76 -10.5 -3.76224 | opp_overlap 445426 GCTCCAAAAGAAAAA CGCCGCG AAGT TGCGGCG TTTCCTGACTCAGGC Rpic_4173 445624 - 445484 - | Entericidin EcnAB TERM 339 445707 - 445743 + H 90 -5.8 -5.2166 | overlap 445708 GCAATCCGCATTTTA G-TGCGACCCCGCGCACC GGG GGTGCGTCGGC-CGCATC TTTTTTGCCTTCTTG TERM 340 445708 - 445741 + H 79 -9.5 -4.21792 | gap 1, overlap 445707 CAATCCGCATTTTAG TGCGACCCCGCGCACC GGG GGTGCGTCGGC-CGCA TCTTTTTTGCCTTCT Rpic_4174 445916 - 447484 + | methyl-accepting chemotaxis sensory transducer TERM 341 447505 - 447533 + T 100 -18.9 -4.54727 | opp_overlap 447505 447506, overlap 447506 ACGCGCCAACACCAA TGCCCTTCCGCCT GAC AGGCGGGAGGGCG TTTTCCTTTACGGCA TERM 342 447533 - 447505 - T 86 -14.5 -3.36452 | opp_overlap 447505 447506, overlap 447506 ACGCGCCAACACCAA TGCCCTTCCGCCT GAC AGGCGGGAGGGCG TTTTCCTTTACGGCA TERM 343 447506 - 447532 + T 100 -20.2 -3.32354 | opp_overlap 447505 447506, overlap 447505 CGCGCCAACACCAAT GCCCTTCCGCCT GAC AGGCGGGAGGGC GTTTTCCTTTACGGC TERM 344 447532 - 447506 - T 85 -18 -2.6155 | opp_overlap 447506 447505, overlap 447505 CGCGCCAACACCAAT GCCCTTCCGCCT GAC AGGCGGGAGGGC GTTTTCCTTTACGGC Rpic_4175 448956 - 447541 - | diguanylate cyclase/phosphodiesterase TERM 345 449165 - 449154 - R 83 -3 -5.25803 | AATTCTGATAAAAAA GATA CGAA TATC AGTTCTGTTTCCACG Rpic_4176 450086 - 449181 - | type IV pilus assembly PilZ Rpic_4177 450206 - 450718 + | GtrA family protein Rpic_4178 451217 - 450735 - | hypothetical protein Rpic_4179 451870 - 453210 + | diguanylate cyclase with PAS/PAC sensor TERM 346 453234 - 453259 + T 84 -10.3 -4.1673 | opp_overlap 453236, overlap 453236 TGCGCGCTAAAACGA AACGGCCCGCC GCAA GGCAGGCCGTC TTTCTTCAAGCGTTG TERM 347 453257 - 453236 - T 100 -15.1 -4.19735 | opp_overlap 453234 453236 CGCGCTAAAACGAAA CGGCCCGCC GCAA GGCAGGCCG TCTTTCTTCAAGCGT TERM 348 453236 - 453257 + T 82 -12.9 -3.67877 | opp_overlap 453236, overlap 453234 CGCGCTAAAACGAAA CGGCCCGCC GCAA GGCAGGCCG TCTTTCTTCAAGCGT Rpic_4180 453852 - 453289 - | putative signal peptide protein Rpic_4181 455658 - 454153 - | RND efflux system, outer membrane lipoprotein, NodT family Rpic_4182 458762 - 455661 - | acriflavin resistance protein TERM 349 456595 - 456617 + g 74 -10.6 -3.69354 | AGGGCGTTGTCGATA TCGCTCGG GTTGATG CCGAGCGA TTTGGCCTTGTCGCG Rpic_4183 461893 - 458759 - | acriflavin resistance protein TERM 350 459098 - 459122 + g 79 -5.7 -4.59773 | overlap 459103 CTCGGCCTCCAGCGC GAAGTCGATCA TCA TGATCGCGTTC TTTTTGACGATACCG Rpic_4184 463339 - 461951 - | efflux transporter, RND family, MFP subunit TERM 351 462050 - 462104 + g 78 -13.7 -3.29144 | gap 3, overlap 462052 GCCGGCGGCGGGGGC GCTTGCGGCGGCGGCTC-CCGGCTGG ATCACC TCAACCGGCGAGCCGTCGC-GCA-GC TTGTCGGCACCGTCG TERM 352 462052 - 462103 + g 70 -13.8 -2.57344 | overlap 462050 CGGCGGCGGGGGCGC TTGCGGCGGCGGCTC-CCGGCTGG ATCACC TCAACCGGCGAGCCGTCGC-GCAG CTTGTCGGCACCGTC Rpic_4185 463593 - 464324 + | two component transcriptional regulator, winged helix family Rpic_4186 464308 - 465594 + | integral membrane sensor signal transduction histidine kinase Rpic_4187 465701 - 466138 + | protein of unknown function DUF333 TERM 353 466168 - 466188 + F 76 -8.9 -4.08557 | opp_overlap 466168 CGCAGGTAATGAAAA GGGCCGCAG ATG TTGCTGCCC TTCTTGTTTGGGGGA TERM 354 466188 - 466168 - f 79 -8.2 -4.43477 | opp_overlap 466168 CGCAGGTAATGAAAA GGGCCGCA GATGT TGCTGCCC TTCTTGTTTGGGGGA TERM 355 466371 - 466383 + F 73 -9.1 -3.96216 | GATCCATGCGTCCGT GGTGG CAA CCACC TTGTTTGGCTCCAGG Rpic_4189 467180 - 467986 + | transposase IS4 family protein Rpic_4191 469423 - 470148 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase Rpic_4192 470809 - 470183 - | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Rpic_4193 472196 - 470844 - | gluconate transporter TERM 356 471846 - 471825 - G 70 -7.3 -4.00038 | gap 1, overlap 471842 GATCAGCAGCACAAA GCCGA-CTTC AAA GAAGACCGGC AAGCCGATGATGAAC TERM 357 472238 - 472260 + r 79 -12.6 -3.54424 | GGCTCTTGTTGTCTG GGCGCCCCGT CGT GCAGGGCGCC TTTACGAAAATGCGG Rpic_4194 472663 - 472277 - | Endoribonuclease L-PSP Rpic_4195 474189 - 472705 - | N-acyl-D-amino-acid deacylase Rpic_4196 475084 - 474191 - | transcriptional regulator, RpiR family TERM 358 474838 - 474812 - G 73 -9.2 -3.91897 | opp_overlap 474812 GCCGCCATCCAGAAA GCGCTGGCCGAC TGC GGCTGCCTGCGC TAGCTTGAGCTTGAG Rpic_4197 475223 - 476500 + | putative D-serine deaminase (D-serine dehydratase) protein Rpic_4198 476513 - 477439 + | PfkB domain protein TERM 359 477707 - 477758 + T 86 -18.2 -2.7165 | opp_overlap 477721, overlap 477719 477721 477754 CAGTTGTGTTCTTGT TGGGTAAAGAAAAACGCCACCGCG TATT TGCGGTGGCGTTTTTTCTTGCGCA TCGTGTGCTTACTTC TERM 360 477744 - 477721 - T 100 -15.3 -5.27335 | opp_overlap 477719 477707 477721 TTGGGTAAAGAAAAA CGCCACCGC GTATTT GCGGTGGCG TTTTTTCTTGCGCAT TERM 361 477721 - 477744 + T 100 -16 -5.45652 | opp_overlap 477721, overlap 477719 477707 TTGGGTAAAGAAAAA CGCCACCGCG TATT TGCGGTGGCG TTTTTTCTTGCGCAT Rpic_4199 480196 - 477767 - | peptidase S45 penicillin amidase Rpic_4200 482500 - 480464 - | multi-sensor hybrid histidine kinase Rpic_4201 483950 - 482652 - | major facilitator superfamily MFS_1 TERM 362 483138 - 483095 - G 72 -7.2 -4.25104 | gap 1, overlap 483096 GGTGCGCCAGGAAAA GC-GCCATGCCCAGCGCCCCC ACC GCCGGCGCCGAGCGCAGCAGC CCCAGCCCCCATGCG Rpic_4202 484103 - 484459 + | hypothetical protein Rpic_4203 484756 - 484478 - | hypothetical protein TERM 363 484745 - 484767 + g 75 -12.6 -3.53012 | GAGTGCTTGTTGTTC GGGGTGGCGC ATG GCGCCTCCTC TTTGGGGAAAACGGA Rpic_4204 485110 - 485358 + | protein of unknown function DUF1458 TERM 364 485373 - 485397 + T 100 -13.6 -4.60041 | gap 1, opp_overlap 485373 GCGGGTGAAGAAAAA GGCGGCCCGGA TTGC TCCGG-CCGCC TTTTTCACGATGACT TERM 365 485397 - 485373 - T 100 -13.6 -5.06414 | gap 1, opp_overlap 485373 GCGGGTGAAGAAAAA GGCGGCCCGGA TTGC TCCGG-CCGCC TTTTTCACGATGACT Rpic_4205 487586 - 485424 - | acid phosphatase TERM 366 487074 - 487084 + g 75 -6.8 -4.3467 | CTGGTCGATCTCAGC CTGC AGC GCAG TTTTGGTGTCAGCGT Rpic_4206 487861 - 489252 + | Di-haem cytochrome c peroxidase TERM 367 489744 - 489725 - g 79 -11.4 -3.92592 | opp_overlap 489723 AGCCGCAAGACGAAA GCCATGGC AGCG GCCACGGC AAGTTCTGGAATGTC Rpic_4207 489376 - 490956 + | Integral membrane protein TerC Rpic_4208 491870 - 490953 - | protein of unknown function DUF6 transmembrane Rpic_4209 492790 - 491963 - | transcriptional regulator, AraC family TERM 368 492074 - 492044 - G 71 -10.2 -3.57144 | overlap 492014 GCTTTGATCGGCAAA GCCGCAGGCGGCCG CCA CTTCCGCCAACGGC TGGCCTTGGGCGATC TERM 369 493189 - 493169 - g 72 -11.1 -3.53012 | opp_overlap 493187 CCGTGCTCGCGCAAA GCGTGGAGG CCG CCTACACGC AGCACGGCGGCTGGG Rpic_4210 493003 - 494559 + | integral membrane sensor signal transduction histidine kinase Rpic_4211 494543 - 495202 + | two component transcriptional regulator, winged helix family Rpic_4212 495308 - 495880 + | putative lipoprotein signal peptide Rpic_4213 496382 - 495942 - | UspA domain protein Rpic_4214 497454 - 496537 - | transcriptional regulator, AraC family Rpic_4215 497938 - 497507 - | putative signal peptide protein TERM 370 497660 - 497645 - G 72 -6.8 -4.2349 | overlap 497646 TTGCGAGACCGAAAA CTGCCG GCTG CGGCAA TCGACGGTGTACAAG Rpic_4216 498297 - 497935 - | putative glycoprotein TERM 371 498802 - 498827 + H 100 -9 -5.4505 | gap 1 GTCCAGAGATTTCAA CCCGCGCCTCG TCAAC TGAG-CGCGGG TTTTTTCTTGGGCAA TERM 372 500994 - 500975 - g 81 -11.4 -4.10657 | gap 1 CTACATGCTGGAAAA CGCGCTGCG TGA CGC-GCGCG AGAACAACGAGCTGC Rpic_4217 499011 - 501761 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Rpic_4218 501885 - 502388 + | putative transmembrane protein Rpic_4219 502447 - 503259 + | transcriptional regulator, ModE family Rpic_4220 503267 - 503764 + | flavodoxin/nitric oxide synthase Rpic_4221 504510 - 503767 - | ABC transporter related TERM 373 504462 - 504473 + g 87 -5.8 -5.00616 | opp_overlap 504453 504454 504451 AGAACACGCGCGCCG CGCT CGTA AGCG TTTTTTGCACGACGA Rpic_4222 505193 - 504507 - | molybdate ABC transporter, inner membrane subunit TERM 374 504912 - 504894 - G 71 -10.2 -3.62572 | CATGACCAGCGGAAA CGCCACCA CGG TGGAGGCG ATCACCGCACCCTGC TERM 375 505408 - 505393 - R 100 -11.8 -6.19443 | CACAGCAAAAAAAAA CGCGGC CGAA GCCGCG CAGATCTCGCTTTCC Rpic_4223 506982 - 505450 - | RND efflux system, outer membrane lipoprotein, NodT family Rpic_4224 510250 - 507044 - | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Rpic_4225 511590 - 510280 - | efflux transporter, RND family, MFP subunit Rpic_4226 512797 - 511706 - | Alpha/beta hydrolase fold-3 domain protein Rpic_4227 513138 - 514082 + | transcriptional regulator, LysR family Rpic_4228 514180 - 514437 + | hypothetical protein TERM 376 514472 - 514500 + F 100 -14.6 -5.29445 | TTTTTCCTCCCTGTT TGCGGCGTGGCT TGAGC GGTCACGCCGCA TTTTTATTATTCAGG TERM 377 515078 - 515101 + G 72 -11 -3.54436 | gap 1 ATCGTCATGCGCCTC CGG-CTGGCCG ATG TGGCCAGGCCG TTCTCTCGCTGTCTC Rpic_4229 514586 - 515362 + | protein of unknown function DUF82 Rpic_4230 516793 - 515363 - | alpha,alpha-trehalose-phosphate synthase (UDP-forming) TERM 378 515590 - 515555 - G 72 -13.3 -3.05596 | gap 1, overlap 515576 515587 CAGTGCGGCATCCAA CTCGCGC-GCCGCGCC GGCAA AGCGCGACAGCACGAG CACGCCCGGGTTTTC Rpic_4231 517590 - 516790 - | HAD-superfamily hydrolase, subfamily IIB TERM 379 517746 - 517708 - R 73 -4.7 -4.64766 | gap 2 GCGAGATTGTAAAAA TGGGCAC--GTGATGCAAA ACC TTCACATCCCGCGTGCCCA AGACGTCACAGCGAT Rpic_4232 519803 - 517752 - | NADH:flavin oxidoreductase/NADH oxidase TERM 380 517916 - 517943 + g 70 -2.4 -4.60041 | opp_overlap 517907 ACAGCACGACGGAAT CGACCGGCAGCC ATTC GGCGGCCTCGCG TTTTTCGCCGTAGCT Rpic_4233 520117 - 519911 - | hypothetical protein TERM 381 520414 - 520428 + G 72 -7 -4.258 | overlap 520411 GCCAACTGGAGCGCG GGCGAC ATC GCCGCC TTTCTTGATGAATCG Rpic_4234 520204 - 521184 + | integrase family protein TERM 382 521220 - 521236 + F 78 -10.1 -3.86202 | overlap 521215 GGCTTCAAACTGGCC GCTAGCC GTT GGCTGGC TTTGCTATGATCGCG Rpic_4235 521352 - 522377 + | UDP-glucose 4-epimerase Rpic_4236 522416 - 523843 + | putative PAS/PAC sensor protein TERM 383 523829 - 523849 + F 79 -9.7 -4.17296 | opp_overlap 523826 523825 CCCAGCATCAATCCC GACGCCTTG CGT TGAGGCGTC TTTCTCTGTGTCCCC TERM 384 523887 - 523909 + F 81 -8.5 -4.65838 | CGCGGTGACTTGGCA CTTGGGTAG ATGTC CTACTCAAG TTTTTCGCATATGTG Rpic_4237 524024 - 525565 + | methyl-accepting chemotaxis sensory transducer TERM 385 525594 - 525625 + T 89 -10.1 -4.61566 | opp_overlap 525600, overlap 525600 CTGTCAGGCAGACAT GCAAAAGGCCGGC AAATTC GCCGGCCTTTCTC TTTTGTGGTTTCCGG TERM 386 525600 - 525619 + T 100 -12.1 -4.52142 | opp_overlap 525600, overlap 525594 GGCAGACATGCAAAA GGCCGGC AAATTC GCCGGCC TTTCTCTTTTGTGGT TERM 387 525619 - 525600 - T 95 -12.8 -4.26188 | opp_overlap 525600 525594 GGCAGACATGCAAAA GGCCGGCA AATT CGCCGGCC TTTCTCTTTTGTGGT Rpic_4238 525994 - 525686 - | histone family protein nucleoid-structuring protein H-NS Rpic_4239 528495 - 526408 - | diguanylate cyclase/phosphodiesterase TERM 388 528585 - 528572 - R 70 -3.8 -4.65168 | AGGATAGCGCAAAAA CCTG TCGTTT CAGG CCGCGAAAAGGCGCG Rpic_4240 530053 - 528800 - | transcriptional regulator, LuxR family TERM 389 529482 - 529531 + g 80 -15.1 -3.10715 | opp_overlap 529467, overlap 529489 TTGCGCTGCTGCATG CGCGCAGCCCG-CTGCAGGTGCG GCAGCA CGCGC-TGCAGGCGGGTTTCGCG TTCGATGGTGCTGAC Rpic_4241 531930 - 530185 - | Polypeptide-transport-associated domain protein ShlB-type TERM 390 532070 - 532048 - R 79 -15.6 -2.73681 | opp_overlap 532047 532046 532045 CAGCCAGCCCAATGA CGATGCCGCA TTG CGCGGCATCG ATGCGTTTGAAACTC Rpic_4242 533612 - 532137 - | putative hemagglutinin-related transmembrane protein TERM 391 534248 - 534228 - g 89 -18.3 -2.90723 | CGAGCCCGAACGACA CGACGGGCG TGA CGCCCGTCG GCAAGGTCGCAAACG Rpic_4243 534101 - 535225 + | putative hemagglutinin-related transmembrane protein TERM 392 535250 - 535282 + F 84 -12 -4.07763 | gap 1, overlap 535250 GTCTGTGCTCTTGAA GGTGCGCGGGCG-TG TTCC CGTCGCTCGCGCATC CTTTTTTTTGCCTAG TERM 393 535250 - 535283 + F 100 -9.6 -5.81412 | gap 2, overlap 535250 GTCTGTGCTCTTGAA GG-TGCGCGGGCG-TG TTCC CGTCGCTCGCGCATCC TTTTTTTTGCCTAGA TERM 394 535444 - 535471 + F 79 -8.6 -4.54026 | opp_overlap 535431 535449 AATAGAGACTTCACT CTAAATTAAGGT AAGT ACCTTAATTGAG TTATTTTGTTTGCGG Rpic_4244 535791 - 535970 + | Flp/Fap pilin component Rpic_4245 535980 - 536531 + | peptidase A24A prepilin type IV TERM 395 536572 - 536557 - f 76 -6.8 -4.57569 | gap 1, overlap 536559 TGAGGCGTTGAAAAA GAGCCGC CAA GCGGC-C TGCCTATAAGAAAGG TERM 396 536571 - 536559 - f 78 -10.5 -3.90316 | overlap 536557 AGGCGTTGAAAAAGA GCCGC CAA GCGGC CTGCCTATAAGAAAG Rpic_4246 536596 - 537099 + | TadE family protein TERM 397 537924 - 537959 + G 78 -14 -3.28712 | gap 1, opp_overlap 537911 537912, overlap 537925 537927 AAGCCGGCGTGTCGA TGGCCAGCCTGACGGGC TCG GCGCG-CAGGCTGGTCG TTGTGCCGCCGCCGC TERM 398 537925 - 537958 + G 74 -15.3 -2.57132 | gap 1, opp_overlap 537911 537912, overlap 537924 537927 AGCCGGCGTGTCGAT GGCCAGCCTGACGGGC TCG GCGCG-CAGGCTGGTC GTTGTGCCGCCGCCG TERM 399 537927 - 537956 + G 73 -14.3 -2.82623 | gap 1, opp_overlap 537912, overlap 537925 537924 CCGGCGTGTCGATGG CCAGCCTGACGGGC TCG GCGCG-CAGGCTGG TCGTTGTGCCGCCGC Rpic_4247 537152 - 538075 + | Flp pilus assembly protein CpaB Rpic_4248 538068 - 539432 + | type II and III secretion system protein TERM 400 540081 - 540125 + G 91 -15.2 -3.85698 | gap 2, opp_overlap 540077, overlap 540066 GTGCAAGCCAACTTC CACTTTGTCGAAGCCGTGCGCA ACC TGCGC-CG-CTTCGACCAGGTG TTTGTGCAGACCGCG TERM 401 540175 - 540207 + G 72 -8.4 -3.9941 | overlap 540194 540201 GGCTTGCGGTCCTGC CGTTGCCGATCTCG CTAGC CGAGATGCGCGACG TTTCGTTCTCCGAAG Rpic_4249 539442 - 540785 + | putative pilus assembly protein TERM 402 540923 - 540948 + G 70 -5.4 -4.45083 | gap 1 GGCGCCGAGTTCGGC CGCTGG-TCGC GCACG GCCATCCAGCG TTTTGTCGATCTGGA Rpic_4250 540782 - 542137 + | type II secretion system protein E Rpic_4251 542130 - 543056 + | type II secretion system protein Rpic_4252 543066 - 544055 + | type II secretion system protein Rpic_4253 544057 - 544980 + | Tetratricopeptide TPR_2 repeat protein Rpic_4254 544977 - 545306 + | putative signal peptide protein TERM 403 547020 - 547048 + G 77 -10.9 -3.74693 | overlap 547023 CGACATCAAACTCCT CTCGCTCGACTGC GAC GCCGTCGAGCTGG TTTACTGACATGGAA TERM 404 547023 - 547045 + G 71 -13.4 -2.97171 | overlap 547020 CATCAAACTCCTCTC GCTCGACTGC GAC GCCGTCGAGC TGGTTTACTGACATG Rpic_4255 545398 - 547056 + | putative transmembrane protein Rpic_4256 547072 - 548487 + | sigma54 specific transcriptional regulator, Fis family TERM 405 548519 - 548548 + F 74 -12.1 -3.19102 | overlap 548517 548515 ACTCTGCGGCGGGCG CCCGATGCGCCAC TCGG GTGGCGGATCGCG TATAGTTTTTGGCTG Rpic_4257 548594 - 549376 + | putative lipoprotein TERM 406 549402 - 549425 + F 89 -16 -3.36823 | overlap 549398 CACATCGTCCCCAGA TCGGGCGGCC TGCG GGTCGCCCGA TTCACTTTTAGGGGC Rpic_4258 549527 - 552766 + | cytochrome P450 Rpic_4259 552935 - 553225 + | putative transmembrane protein TERM 407 553239 - 553260 + T 100 -10.1 -5.28778 | opp_overlap 553228 AAATCGTGAATCCCA CGCCCGC CGTTCGTC GCGGGCG TTTTTTCTCCCTGGT Rpic_4260 554432 - 553278 - | oxidoreductase domain protein Rpic_4261 554929 - 554585 - | Antibiotic biosynthesis monooxygenase Rpic_4262 556117 - 554978 - | cytochrome P450-like protein TERM 408 555147 - 555117 - G 70 -14.1 -2.52464 | gap 2 GCGGTGGCCAATGCA TCGGCGG-GGCA-GC GGT GCGTGCCGCCGCCGA ACGTCCACAGGCGCG TERM 409 555366 - 555351 - G 70 -4.6 -4.42653 | overlap 555352 ACTTCACGCACAAAA GGCTCG ATGG CGAGCG GCTGCGCGCGCAGCC Rpic_4263 556206 - 556922 + | transcriptional regulator, ArsR family Rpic_4264 557481 - 556939 - | GCN5-related N-acetyltransferase Rpic_4265 558679 - 557537 - | PepSY-associated TM helix domain protein Rpic_4266 560830 - 558710 - | TonB-dependent siderophore receptor TERM 410 558740 - 558761 + g 71 -10.1 -3.56325 | CACGCCCAGCAGCGC CATGCGCGG GGCA CCGGGCATG TTGTAGTTCTCGGCG TERM 411 560873 - 560853 - H 75 -2.4 -4.98531 | overlap 560855 CCCGTAAAGTAAAAA GTGGAGCG CGACT CCCTCCCC CGAGGTTGGCGCCTT TERM 412 562116 - 562096 - g 81 -14 -3.53012 | TGGCTGCCGCCGAAA CCGGCACG GCAGT CGTGCCGG ACCTGACCGATGCCG Rpic_4267 561096 - 562172 + | oxidoreductase domain protein Rpic_4268 562169 - 564280 + | sodium/hydrogen exchanger Rpic_4269 565570 - 564308 - | Patatin TERM 413 565171 - 565130 - G 91 -7.1 -5.00616 | gap 1, opp_overlap 565157 565168, overlap 565115 GCGCGGTGTAAAAAA GCCGCGCTGGCCTTCGAGCA GCG TG-TCGGCGGCCTGCATGGC GGTCAGCCATTTGCG TERM 414 565252 - 565283 + g 81 -12.4 -3.91084 | gap 1, overlap 565227 GCGGCGAGAACGTCG GCTGCGTGATGATCT GCC AGAAC-TCACGCAGC TTTGCTTGGCGATGC TERM 415 565523 - 565555 + g 72 -6.9 -4.25283 | gap 1, overlap 565492 565523 565526 GCGTGACGACTCTGC CGGCGTG-GGCCGC TTGGTT GCGGCCACGCGTAG TTTTGGTGCGGGCAT Rpic_4270 566387 - 565602 - | 3-hydroxybutyrate dehydrogenase TERM 416 565868 - 565827 - G 72 -12.9 -3.14132 | opp_overlap 565827 565842 565865 CGGCGTGCGCACGAA GCCGGGGCACACCACGTGC GAGC GCACGTTATGCGCCGCGCC TTCCTTGGCCAGTAC Rpic_4271 567184 - 566441 - | Acetoacetate decarboxylase Rpic_4272 568780 - 567377 - | transcriptional regulator, GntR family with aminotransferase domain Rpic_4273 568936 - 570273 + | aminotransferase class-III Rpic_4274 570275 - 571798 + | methylmalonate-semialdehyde dehydrogenase TERM 417 571816 - 571844 + T 84 -11.7 -4.11216 | opp_overlap 571822, overlap 571822 CGGCGCATCGACCAT GAGAAAGGGAGGC AAT GCCTCCCTTCATC TTTTGAACATGCCGA TERM 418 571838 - 571822 - T 91 -13.7 -3.99592 | opp_overlap 571816 571822 ATCGACCATGAGAAA GGGAGGC AAT GCCTCCC TTCATCTTTTGAACA TERM 419 571822 - 571838 + T 86 -13.7 -3.53779 | opp_overlap 571822, overlap 571816 ATCGACCATGAGAAA GGGAGGC AAT GCCTCCC TTCATCTTTTGAACA Rpic_4275 572081 - 571875 - | putative cold-shock DNA-binding domain protein TERM 420 572035 - 572002 - G 88 -14 -3.91798 | gap 2, opp_overlap 572022 572026, overlap 572003 GAATCCCGAATGAAA CTCGGGGCAGCATGCA TTTC TGCA-GCTGCCCCG-G CGGGCGGATCATATT TERM 421 572035 - 572003 - G 75 -14.2 -2.94597 | gap 1, opp_overlap 572022 572026, overlap 572002 AATCCCGAATGAAAC TCGGGGCAGCATGCA TTTC TGCA-GCTGCCCCGG CGGGCGGATCATATT TERM 422 572132 - 572113 - R 79 -15 -2.90496 | overlap 572110 GGGTTCGTCAAACCA GGCCACCG CTTC CGGTGGCC ATCCGACTGCTTGAT TERM 423 572219 - 572199 - R 83 -16.1 -3.06815 | overlap 572212 ATTCCGGCCAATACA CGCGCGAGG AAA CCCCGCGCG GCAAGCCAAAACCGG Rpic_4276 572462 - 572259 - | cold-shock DNA-binding domain protein TERM 424 573274 - 573299 + G 81 -4.7 -4.8622 | gap 1, overlap 573276 AGTGGGTGTTGCCCT TGGCGCTGATCG TGC TGATC-GCGCTG TTTTTGATTCAAAGG TERM 425 573276 - 573297 + G 70 -7.3 -4.05402 | gap 1, overlap 573274 TGGGTGTTGCCCTTG GCGCTGATCG TGC TGATC-GCGC TGTTTTTGATTCAAA TERM 426 574504 - 574471 - g 81 -12.3 -3.90112 | overlap 574489 TCGGCTTCAAGGAAA CGCCCGCTGTGGACG AGAT CGTCCGCAGCGTGGG CGAGCGGCTGGGCAT Rpic_4277 572814 - 574709 + | K potassium transporter Rpic_4278 575543 - 574728 - | formate dehydrogenase family accessory protein FdhD TERM 427 575033 - 574988 - G 70 -11.2 -3.30771 | gap 2 CCACATCTTCCAGAA CATGCAGTGGTGCATGGGTGTC TGCG GGCACCCA-GC-CCGCCGCATG CAAGCCGCCCGTGAG Rpic_4279 575785 - 575540 - | hypothetical protein Rpic_4280 578124 - 575785 - | oxidoreductase alpha (molybdopterin) subunit Rpic_4281 579880 - 578153 - | major facilitator superfamily MFS_1 TERM 428 579210 - 579173 - G 73 -5.6 -4.35483 | gap 1, overlap 579174 GGCCAGCACAATAAA GGTTTGCGACACGCCCA CAGAT TCGG-GCGTCGCAAACA GCTTCATCAGGCGGT Rpic_4282 580568 - 580089 - | Hpt protein TERM 429 580636 - 580606 - R 100 -18.3 -4.55798 | opp_overlap 580600 580601, overlap 580629 GAGCCCAAATGAAAA CGGGCGCACCGCC GGTAA AGCGATGCGCCCG TTGCGCTTTCAGCAC Rpic_4283 583756 - 580661 - | heavy metal efflux pump, CzcA family TERM 430 582092 - 582104 + g 79 -5.5 -4.63932 | overlap 582076 582075 GGGCAGCGTGATGCG CAGCC ACA GGTTG TTTTCTTCCAGCGTG Rpic_4284 584907 - 583759 - | efflux transporter, RND family, MFP subunit TERM 431 584786 - 584796 + g 72 -8.2 -4.16943 | overlap 584763 GGCGCAGATGCCGGG CCCG CTT CGGG TTTTGCAGTCTCGGC Rpic_4285 586282 - 584912 - | outer membrane efflux protein TERM 432 584996 - 585008 + g 76 -6.2 -4.56597 | CTGCGCCTGCGCGAC CGCC AGTTC GGCG TTTTTGAGCGCGCCC TERM 433 585130 - 585158 + g 70 -10.9 -3.30771 | overlap 585133 GCTGCTTGTTGAAGT CGAGCTGCGCAAG CGT CTGGCGCAGCGTG TTGTAGGCGGTATCG Rpic_4286 586841 - 586440 - | transcriptional regulator, MerR family Rpic_4287 586943 - 587365 + | hypothetical protein Rpic_4288 587795 - 587379 - | transport-associated TERM 434 587845 - 587813 - R 89 -18.5 -3.06815 | opp_overlap 587804 ATGCTCCTGAAGAGA GGGCGACAGGCTCAC ATC ATAAGCCTGCCGCCC ACACAATCCGCTTAG Rpic_4289 588327 - 587857 - | DoxX family protein Rpic_4290 589082 - 588324 - | hypothetical protein TERM 435 588438 - 588421 - G 70 -4.8 -4.34402 | GCGGTCAGATCAAAA GCTGGC AGCTCA GCCAAC GTGGTCTCGAGCGCG Rpic_4291 589935 - 589069 - | protein of unknown function DUF692 Rpic_4292 590223 - 589957 - | putative signal peptide protein TERM 436 590364 - 590380 + r 81 -4.5 -5.00616 | CTGACACGGAGAGCG GAAATTT TTT GAATTTC TTTTTTAGGGCAGCG TERM 437 590430 - 590411 - R 100 -15 -5.4756 | AACGGCAATAAAAAA GGCGACCC CAAT GGGTCGCC TGCAGACTGAACAGG Rpic_4293 590976 - 590452 - | hypothetical protein Rpic_4294 591366 - 591097 - | hypothetical protein Rpic_4295 592466 - 591525 - | protein of unknown function DUF6 transmembrane TERM 438 592042 - 592077 + g 72 -8.3 -4.07568 | opp_overlap 592041 592042 ACGACGCCGATAAAG GC-GATGGCCAGCCACG TGAG CTTGGC-GGCCGTCAGC TTTTCCGACAGAAAC Rpic_4296 592562 - 593014 + | transcriptional regulator, AsnC family Rpic_4298 594314 - 594790 + | transcriptional regulator, AsnC family Rpic_4299 594934 - 596664 + | gamma-glutamyltransferase TERM 439 596681 - 596731 + T 100 -19.8 -3.55444 | opp_overlap 596696, overlap 596696 TGGCATTGCAGCACC CGCAGCACGAAAAAAGCCCGCCGA AAC TTGGCGGGCTTTTTCTTTGCGGCG TTTCCCGGATCAGGC TERM 440 596696 - 596716 + T 100 -14.7 -5.27335 | opp_overlap 596696, overlap 596681 CGCAGCACGAAAAAA GCCCGCCGA AAC TTGGCGGGC TTTTTCTTTGCGGCG TERM 441 596716 - 596696 - T 100 -12.5 -5.1861 | opp_overlap 596696 596681 CGCAGCACGAAAAAA GCCCGCCGA AAC TTGGCGGGC TTTTTCTTTGCGGCG Rpic_4300 597814 - 596741 - | 4-hydroxyphenylpyruvate dioxygenase TERM 442 597104 - 597118 + g 71 -9.2 -3.71848 | GGCGTGCATGAGATG GGCGCG GTG CGTGCC TTCTTCATAGAGCGG Rpic_4301 599086 - 597896 - | major facilitator superfamily MFS_1 TERM 443 598661 - 598643 - G 91 -14.6 -3.85698 | overlap 598655 GTGTTGCGCGACAAA GGCACCGA GAA TCGGTGCC ATCAACGCCACGAAG Rpic_4302 599924 - 599091 - | Shikimate dehydrogenase substrate binding domain protein TERM 444 599817 - 599828 + g 82 -5.8 -4.72272 | opp_overlap 599816 599817, overlap 599813 CATGGGCATCACAAC GGCA TCGA TGCC TTTTTGCTCGAACCA Rpic_4303 601329 - 599944 - | major facilitator superfamily MFS_1 TERM 445 600875 - 600865 - G 79 -2.4 -5.03747 | AAAGCTCGCAAAAAA CCCG CGC CGGC CAAATGGTGCGTGCT TERM 446 601264 - 601278 + g 76 -9.2 -4.18934 | CGCCGAGCCGATCCA GCCGCT GGC GGCGGC TTTCTTCGACTGGTG Rpic_4304 602328 - 601561 - | transcriptional regulator, IclR family TERM 447 602534 - 602556 + G 77 -9 -4.26903 | opp_overlap 602496 602534, overlap 602541 ACGCTGCCTGAAAAG CTGGAGGCGG CGG CCGCTGCCGG TTTTGATGGCATCGA Rpic_4305 602459 - 604345 + | 4-hydroxyphenylpyruvate dioxygenase TERM 448 604362 - 604387 + F 76 -12.5 -3.28712 | TCACGAAGACTTTGG CGCTCGCGGTC GTGC GGCCGTGGGCG TTATCCACGCAACAC TERM 449 604425 - 604402 - f 72 -12.4 -3.09878 | overlap 604405 GTTATCCACGCAACA CCACGGCTGC GCGG GCAGCCGTTG CACATCCATCCCCAT Rpic_4306 604467 - 605531 + | porin Gram-negative type TERM 450 605581 - 605560 - T 100 -15.1 -4.8622 | opp_overlap 605560 TCTCGCAATGAAAAA GCCCGCCAG CGTC CCGGCGGGC TTTTTCGTTTTCTGC TERM 451 605560 - 605581 + T 100 -12.9 -5.1417 | opp_overlap 605560 TCTCGCAATGAAAAA GCCCGCCAG CGTC CCGGCGGGC TTTTTCGTTTTCTGC Rpic_4307 606852 - 605599 - | D-amino-acid dehydrogenase TERM 452 606259 - 606214 - G 76 -13.9 -3.14344 | opp_overlap 606213 606214 CACGCCTTGCATGAA GCGCACGCCGCGCCTTTCGCA GGCC TGCGCAAGGCCCCGCGTGAAC TTGTGGATGTCACCG TERM 453 606214 - 606259 + g 70 -11.7 -3.39327 | opp_overlap 606214, overlap 606213 CACGCCTTGCATGAA GCGCACGCCGCGCCTTTCGCA GGCC TGCGCAAGGCCCCGCGTGAAC TTGTGGATGTCACCG Rpic_4308 607959 - 607168 - | Ethanolamine ammonia-lyase Rpic_4309 609362 - 607980 - | Ethanolamine ammonia lyase large subunit TERM 454 610658 - 610680 + G 78 -12.7 -3.48276 | opp_overlap 610658 TGACGCAATGGAAAA CGCCACCGC TGATC GTGGTGGCG TTCTGTGCGGCGGCG TERM 455 610680 - 610658 - g 86 -10.5 -4.28774 | opp_overlap 610658 TGACGCAATGGAAAA CGCCACCGC TGATC GTGGTGGCG TTCTGTGCGGCGGCG Rpic_4310 609487 - 610722 + | chromate transporter, chromate ion transporter (CHR) family Rpic_4311 612170 - 610773 - | DEAD/DEAH box helicase domain protein TERM 456 611988 - 612010 + g 70 -2.7 -4.65895 | gap 2, opp_overlap 611988 611989, overlap 611987 611988 CAGGGCCAGCGCAAA C--GCAGCGGT TTT GCCGCTGCCCG TTTTTGCCTGCGCGA Rpic_4312 612505 - 612185 - | hypothetical protein Rpic_4313 612968 - 614716 + | Poly-beta-hydroxybutyrate polymerase domain protein Rpic_4315 614881 - 615393 + | hypothetical protein TERM 457 616316 - 616335 + G 78 -10.6 -3.96148 | GTTTCCTGATGCAGT CGCCCGCG TATC CGCGGCCG TTTATCGTGACGGAC Rpic_4316 615403 - 616848 + | Phosphate butyryltransferase Rpic_4317 616845 - 618026 + | acetate kinase TERM 458 618670 - 618693 + G 81 -13.8 -3.53012 | opp_overlap 618670 618684 TTGAGTCTGCAATCA CGGCCTCCGC ACAA GCGCAGGCCG TTTGGCAGCGCCGCA TERM 459 618693 - 618670 - g 71 -13.8 -2.71731 | opp_overlap 618670, overlap 618684 TTGAGTCTGCAATCA CGGCCTCCGC ACAA GCGCAGGCCG TTTGGCAGCGCCGCA Rpic_4318 618456 - 619955 + | succinic semialdehyde dehydrogenase Rpic_4319 619991 - 621160 + | iron-containing alcohol dehydrogenase TERM 460 621489 - 621479 - g 72 -8.2 -4.07568 | opp_overlap 621484, overlap 621480 CGTCGTGCTGGAAAA GCGC CCG GCGC TGGGCGGCGTTTGGC Rpic_4320 621357 - 622820 + | flavin-containing monooxygenase FMO Rpic_4321 622834 - 623811 + | Alpha/beta hydrolase fold-3 domain protein TERM 461 624316 - 624346 + F 79 -9.7 -4.15044 | gap 2, overlap 624326 GTCGCTCAGGTCGGT GCC-GCACCGC-GCG TCA CGCGGCCGTGCTGGC TTTCTTGGCGGCGAG Rpic_4322 624474 - 624887 + | Endoribonuclease L-PSP Rpic_4323 624947 - 626311 + | protein of unknown function DUF1329 TERM 462 626563 - 626549 - g 76 -2.7 -4.8543 | overlap 626550 CAACGCGGACAAAAA GCCCG AGCTG CGCGC TCACGGGTGATCCGA Rpic_4324 626386 - 628221 + | protein of unknown function DUF1302 TERM 463 630562 - 630594 + G 81 -16.4 -2.71011 | gap 1 GTGATGGCGATGACC GCGCTTCCAGCGCTG GCCT CAGTGCTGG-AGCGC TGGTTCCCGCGGCGT Rpic_4325 628285 - 630645 + | transporter, putative TERM 464 631173 - 631160 - g 76 -9.5 -4.08945 | opp_overlap 631170, overlap 631146 ACGACGCTGCCAAAA CCGCC CGGG GGCGG CAGGGCCGACCGCAA Rpic_4326 630659 - 631630 + | glycosyl hydrolase, BNR repeat TERM 465 632041 - 632025 - g 71 -9.3 -3.72027 | overlap 632011 ACTCTTCATCAAGAA GGGCGGC AGG GCCGGCC GATCGCCGTGGCACC Rpic_4327 631717 - 632547 + | Phytanoyl-CoA dioxygenase TERM 466 632688 - 632709 + T 100 -14.5 -5.84381 | CCTCTGGGGTCTTTC GATGCCGTG GCAG CACGGCATC TTTTTTTGTTCGTGC Rpic_4328 634159 - 632726 - | transcriptional regulator, TetR family Rpic_4329 634876 - 636237 + | FAD dependent oxidoreductase Rpic_4330 636324 - 637202 + | Phytanoyl-CoA dioxygenase TERM 467 637451 - 637417 - g 73 -5.8 -4.45117 | gap 3, opp_overlap 637438, overlap 637422 GACATTGCAAAGAAA CACGATGAG-GC-GCCG GAGG CGGCCGCGCTCA-CGCG GCGCGGCTTTCTCGG TERM 468 637438 - 637458 + G 81 -11.8 -3.87815 | opp_overlap 637422 637417 GAGGCGCCGGAGGCG GCCGCGCT CACGC GGCGCGGC TTTCTCGGCATGGCC TERM 469 638391 - 638373 - g 76 -9.5 -4.07568 | overlap 638384 638385 GCCGCTGCCGGAAAA GCGCCGC GAAAT GCAGCGC CGCTGGCCTGCCTAT Rpic_4331 637396 - 638892 + | Amine oxidase (flavin-containing) Rpic_4332 638892 - 639158 + | hypothetical protein Rpic_4333 639276 - 642275 + | transposase Tn3 family protein Rpic_4334 642268 - 642603 + | TnpC Rpic_4335 643962 - 642769 - | integrase family protein Rpic_4336 644638 - 643997 - | hypothetical protein TERM 470 644497 - 644471 - G 71 -13 -3.01712 | opp_overlap 644471 GCGCTGCCCCGAATA GGCTTTGCGCAC GTC GTACGCCAAGCC GAGCACGAAGCCTTC Rpic_4337 644928 - 644653 - | plasmid stabilization system Rpic_4338 645191 - 644928 - | transcriptional regulator, CopG family Rpic_4339 645974 - 645243 - | hypothetical protein TERM 471 645682 - 645626 - G 71 -10.8 -3.64703 | overlap 645627 GCTGGTGCAGGGAAA TGGCCGGCCCGGTGGGCTT-GCCGTTCA CGA TGT-CGCCCAAGACCACCGAGCCGACCG TGCCGTGGAAGGTCA TERM 472 645681 - 645627 - G 73 -14.3 -2.78679 | overlap 645626 CTGGTGCAGGGAAAT GGCCGGCCCGGTGGGCTT-GCCGTTCA CGA TGT-CGCCCAAGACCACCGAGCCGACC GTGCCGTGGAAGGTC TERM 473 646278 - 646304 + G 72 -2.8 -4.64766 | overlap 646280 ACCGAGACGCGGGAG CTGTACCGCGAA GTC TGCGCGCTGCTG TTTTTCCGCTATGGC Rpic_4340 646188 - 647225 + | hypothetical protein TERM 474 647429 - 647411 - T 100 -11.7 -5.72622 | opp_overlap 647411 GCTACAAAGAAAAAA CGCCTGC TCGAT GCAGGCG TTTCCAAGAGGGAGG TERM 475 647411 - 647429 + T 74 -11.7 -3.53012 | opp_overlap 647411 GCTACAAAGAAAAAA CGCCTGC TCGAT GCAGGCG TTTCCAAGAGGGAGG Rpic_4341 647912 - 647610 - | hypothetical protein Rpic_4342 648051 - 648356 + | hypothetical protein TERM 476 648372 - 648391 + F 84 -11.4 -4.02132 | overlap 648362 GCCCACTCACTTAGA GGTCACGC TTCG GCGTGGCC TTTGTCAGTTTACGG Rpic_4343 648416 - 648592 + | hypothetical protein Rpic_4344 648610 - 648915 + | hypothetical protein TERM 477 649038 - 649054 + G 100 -2.1 -5.5112 | GCGACCACGGATGCG CCTGAGC AAT GCCAAGG TTTTTTGTTGATGCA Rpic_4345 648984 - 649229 + | hypothetical protein Rpic_4346 649234 - 649443 + | hypothetical protein TERM 478 649462 - 649487 + F 100 -13.3 -4.98531 | ACAGGCTGTCAACCG GGCCTCGTTCA GCGA TGAGCGGGGCC TTTTTCATTTCGAGA Rpic_4347 649516 - 651111 + | hypothetical protein Rpic_4348 651127 - 651456 + | minor coat protein TERM 479 652336 - 652284 - g 77 -15.5 -2.52464 | overlap 652327 CCTCGGCGCAACCGA TGCAGCAGCCATCGCAGGCTGCG GCTACTA CGCAGCCCGCAAAGGCCGATGCC CTAGCGGATGACTAC Rpic_4349 651461 - 652792 + | Zonular occludens toxin TERM 480 653159 - 653129 - f 71 -6 -4.32579 | overlap 653125 653133 ACACTTGAGAACAAA GAAACGGCAAAGCC AAT GGCGGCGCGGTTTC TTAGGGCAAAAGAAA TERM 481 653143 - 653133 - f 78 -4.6 -4.73677 | overlap 653129 653125 TTGAGAACAAAGAAA CGGC AAA GCCA ATGGCGGCGCGGTTT TERM 482 653203 - 653175 - f 81 -8.1 -4.67048 | gap 1 TTAGGGCAAAAGAAA GCCCGGCGATGC TGGCAG GCGTC-CCGGGC GGTGGCACACAACTC TERM 483 653251 - 653235 - f 73 -9.5 -3.97636 | ACTTGAACGGAGAAA TGTCATG CGC CATGACA TCGTAGGTGAACGGG Rpic_4350 653239 - 654120 + | hypothetical protein TERM 484 654109 - 654148 + T 83 -4.2 -5.1101 | overlap 654111 GAGCGGTTTCTGGGT GCGCGCTCGTGAAAGG ACTCCCTC CCTTTCTTGAGCGGAC TTTTTTACATAGTCG TERM 485 654253 - 654235 - T 72 -3 -4.7629 | overlap 654237 CGACGAACCTAAAAA TGCGTCGG GTC CAGACGTA CAACTGTGTCGAAAT Rpic_4351 655039 - 654356 - | hypothetical protein Rpic_4352 657194 - 655017 - | type I phosphodiesterase/nucleotide pyrophosphatase TERM 486 655778 - 655759 - G 71 -10 -3.57792 | opp_overlap 655771 655775 GCAGGCACCTTGAAA CTGGCAAC AGGC GTCGCCAG GCTTGCGCTGATAGC Rpic_4353 657655 - 658620 + | transcriptional regulator, MerR family Rpic_4354 658733 - 659485 + | short-chain dehydrogenase/reductase SDR Rpic_4355 659482 - 659937 + | hypothetical protein Rpic_4356 659967 - 660443 + | succinate dehydrogenase, cytochrome b556 subunit Rpic_4357 660454 - 660819 + | succinate dehydrogenase, hydrophobic membrane anchor protein Rpic_4358 660823 - 662601 + | succinate dehydrogenase, flavoprotein subunit Rpic_4359 662624 - 663325 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein TERM 487 663329 - 663348 + T 70 -10.6 -3.49475 | opp_overlap 663329 CGCGCGGTGTAAGGA GGCCGGCG CTCA CGGCGGCC TTGTATAGGCGTAAA Rpic_4360 664207 - 663476 - | hypothetical protein Rpic_4361 664836 - 664204 - | RNA polymerase, sigma-24 subunit, ECF subfamily Rpic_4362 665563 - 664979 - | beta-Ig-H3/fasciclin TERM 488 665144 - 665164 + g 70 -13.9 -2.5092 | overlap 665143 665162 TTTGAGCATCGCCTT GCCGCCGCC ATC GGCGACGGC CTTCATCAGGTCTTG Rpic_4363 666070 - 666651 + | hypothetical protein TERM 489 667212 - 667244 + G 100 -18.6 -4.11692 | overlap 667205 GCGGTACTGGGCGGA TCGCCACTGCAGAC CGCAC GTTTGCAGTGGCGA TTTTCCGACTACGTG Rpic_4364 666648 - 667334 + | hypothetical protein Rpic_4366 668181 - 668002 - | hypothetical protein Rpic_4365 667604 - 668074 + | hypothetical protein Rpic_4367 669372 - 668197 - | efflux transporter, RND family, MFP subunit Rpic_4368 671738 - 669369 - | protein of unknown function DUF214 TERM 490 669620 - 669606 - G 78 -10 -3.96148 | GGCGGTGAGCACAAA CTGCTC CCC GAGCAG AATCCACGCGACTTC TERM 491 670375 - 670363 - G 70 -6.3 -4.21922 | GTATCGAAAAGGAAA TCGAT TGA ATCGA AGAAAAACCCGCCGA TERM 492 671754 - 671768 + r 74 -11.4 -3.56092 | GCCAGGTCTCCGACT CGGGCA CGC TGCCCG TTTCGGCGGTGCTCG Rpic_4369 672436 - 671732 - | ABC transporter related Rpic_4370 672741 - 672451 - | hypothetical protein Rpic_4371 673619 - 672975 - | putative transmembrane protein Rpic_4372 675916 - 673625 - | heavy metal translocating P-type ATPase TERM 493 675057 - 675004 - G 70 -11.5 -3.41988 | opp_overlap 675003, overlap 674999 675002 TTTTATCGAAGAACA GCGTGTCGGCCAACGCCAGCCGCTC GAGC GCGCCGCCGCCTTTGACCAGCACGC CTCGCTTGGCACAAC Rpic_4373 676476 - 675952 - | cytochrome B561 Rpic_4374 677778 - 676522 - | hypothetical protein Rpic_4375 680888 - 677775 - | heavy metal efflux pump, CzcA family Rpic_4376 681973 - 680888 - | efflux transporter, RND family, MFP subunit TERM 494 681693 - 681675 - G 100 -10.2 -5.00616 | opp_overlap 681675, overlap 681658 681677 TGCGGGCTCAAAAAA CCGGCCAG CGG CTGGCCCG CCCGGACGGTTTGCC Rpic_4377 682742 - 682272 - | hypothetical protein TERM 495 682391 - 682372 - G 72 -12.8 -3.10344 | overlap 682342 GCGGGACGTAATACA GCGGCGCC GGCA AGCGCCGC AAGGAGAAGGAACGT Rpic_4378 684436 - 682880 - | thymidine phosphorylase Rpic_4379 684716 - 684438 - | hypothetical protein Rpic_4380 685687 - 684746 - | ribose-phosphate pyrophosphokinase Rpic_4381 687048 - 685684 - | beta-lactamase domain protein TERM 496 686633 - 686665 + g 81 -9.7 -4.30576 | TCGCCATAGCCGACG GGATGCAGCCGGCGT AAC GCCCTGGCGGCGTCC TTTTCGTCATAGAGC Rpic_4382 687489 - 687067 - | heat shock protein Hsp20 Rpic_4383 687829 - 688329 + | hypothetical protein Rpic_4384 688344 - 688565 + | hypothetical protein Rpic_4385 688671 - 690662 + | ATP-dependent metalloprotease FtsH Rpic_4386 691940 - 690654 - | Erythromycin esterase Rpic_4387 692208 - 692708 + | hypothetical protein Rpic_4388 693773 - 692841 - | 1-phosphofructokinase Rpic_4389 693983 - 694246 + | hypothetical protein TERM 497 695298 - 695257 - g 81 -13 -3.61268 | gap 1, opp_overlap 695266 CATTGAATGGGCAAA GGACGGGCTCAC-CGGCGA GGTGT TCGTCGTGCAAGCCCGCCC GGAAACGGTCGAGTC Rpic_4390 694295 - 696694 + | phosphoenolpyruvate synthase Rpic_4391 699382 - 696722 - | formate dehydrogenase, alpha subunit Rpic_4392 700947 - 699370 - | NADH dehydrogenase (quinone) TERM 498 702527 - 702559 + G 70 -4.6 -4.35483 | GATCTCGGTTTTTAC GCCGGCCGCGCCTA TGGTC TTGTCGCTTCCGGC TTTGTTCTGGTCGGG Rpic_4393 701759 - 703507 + | integral membrane sensor signal transduction histidine kinase Rpic_4395 704052 - 704597 + | heat shock protein Hsp20 Rpic_4396 704812 - 705153 + | hypothetical protein Rpic_4397 705150 - 705398 + | hypothetical protein Rpic_4398 706136 - 705471 - | hypothetical protein Rpic_4399 706210 - 706365 + | hypothetical protein Rpic_4400 706368 - 708005 + | chaperonin GroEL Rpic_4401 708068 - 708505 + | hypothetical protein Rpic_4402 708522 - 708905 + | hypothetical protein Rpic_4403 710739 - 708922 - | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Rpic_4404 710977 - 711465 + | hypothetical protein Rpic_4405 711679 - 712041 + | conserved hypothetical signal peptide protein Rpic_4406 714484 - 712094 - | hypothetical protein TERM 499 712937 - 712880 - GT 78 -9.8 -3.97331 | gap 1, opp_overlap 712925 AAGGTAGGTAAAGAA CCGCACGCCGG-CGTCCTGGAGGTC AAACACCAG GACGTCCAGATCGGCCAGCGCGCTG CGCGGCATGCCATTG Rpic_4407 715722 - 714439 - | protein of unknown function DUF187 TERM 500 715210 - 715227 + gr 82 -4.1 -5.06414 | gap 1, overlap 715213 715214 GGCGGCGAACTGGTT GATGCGGG CCA CCCG-GTC TTTTTGTTCGGGGAC Rpic_4408 716485 - 715694 - | polysaccharide deacetylase Rpic_4409 717131 - 716538 - | Rhomboid family protein TERM 501 717034 - 716977 - G 71 -9.2 -3.72576 | gap 2 TTTGCGTGCAGGAAA GCGTATGTCAGCGGCTGCCACGGCAGGA ATCC TCCCACCAC-GCCGCCGCC-AGATACGC CGAGTGGCCAGAGCG Rpic_4410 717312 - 719060 + | PHP domain protein Rpic_4411 719222 - 719539 + | ribosomal subunit interface protein Rpic_4412 720309 - 719563 - | acetoacetyl-CoA reductase Rpic_4413 720820 - 720317 - | hypothetical protein Rpic_4414 721482 - 720829 - | hypothetical protein Rpic_4415 722567 - 721530 - | Alcohol dehydrogenase GroES domain protein Rpic_4416 722695 - 724245 + | hypothetical protein Rpic_4417 724431 - 724919 + | hypothetical protein Rpic_4418 724942 - 725406 + | putative signal-transduction protein with CBS domains Rpic_4419 725447 - 726130 + | hypothetical protein Rpic_4420 726135 - 726785 + | phosphoribosyltransferase Rpic_4421 729453 - 726826 - | magnesium-translocating P-type ATPase Rpic_4422 731149 - 729674 - | RND efflux system, outer membrane lipoprotein, NodT family TERM 502 730621 - 730644 + g 70 -8.1 -4.06562 | TGCCGGTCAAGGTGA GGTAGGCGG CGGCCA CCGCATACC TTTGTCCTTCCGCTT TERM 503 730776 - 730750 - G 75 -4.5 -4.64766 | gap 1 TCCACAGCGTAAAAA GGCTT-GGCA CCCCGGCC TGCCCAAGCC TGGCGGGCACCGCTG TERM 504 731108 - 731085 - G 70 -5.9 -4.25104 | TGCGGTGCATGAAAA TCCGGCCCG ACGGCG CAGCCCGGA ACCACAAGCGCGACG Rpic_4423 732231 - 731146 - | secretion protein HlyD family protein Rpic_4424 732926 - 732228 - | ABC transporter related Rpic_4425 734065 - 732929 - | protein of unknown function DUF214 TERM 505 733195 - 733220 + g 72 -9 -4.09685 | overlap 733184 CCTTGGCCCCGATGG CCTTGAGTGC GCCAAA GCGCTCGAGG TTTTCCAGGATGAAC Rpic_4426 734857 - 734210 - | two component transcriptional regulator, LuxR family Rpic_4427 736242 - 734854 - | multi-sensor signal transduction histidine kinase TERM 506 736335 - 736292 - H 76 -8.9 -4.08064 | gap 2, overlap 736293 AAGCCCCCCGGAAAA CCCTGCC--GCCGCTGTCAGG GAAT CCTGACAGCGGCATGGCACAT CCCGACGACCATCTC TERM 507 736334 - 736293 - H 72 -12.4 -3.04517 | gap 2, overlap 736292 AGCCCCCCGGAAAAC CCTGCC--GCCGCTGTCAGG GAAT CCTGACAGCGGCATGGCACA TCCCGACGACCATCT Rpic_4428 736497 - 737288 + | transcriptional regulator, Crp/Fnr family TERM 508 737308 - 737350 + T 100 -22.2 -3.86776 | opp_overlap 737313, overlap 737294 737313 TCGGGGCGCCCCTCA AAAAACATGCCGCCCCGCTT TTC AGGTGGGGCGGCATGTTTTC TTTACTGCTTCATTA TERM 509 737345 - 737313 - T 100 -17.7 -5.00616 | opp_overlap 737294 737308 737313 GCGCCCCTCAAAAAA CATGCCGCCCCGCTT TTC AGGTGGGGCGGCATG TTTTCTTTACTGCTT TERM 510 737313 - 737345 + T 100 -22.1 -4.96388 | opp_overlap 737313, overlap 737294 737308 GCGCCCCTCAAAAAA CATGCCGCCCCGCTT TTC AGGTGGGGCGGCATG TTTTCTTTACTGCTT Rpic_4429 738014 - 737367 - | transport-associated TERM 511 737857 - 737874 + g 70 -5.5 -4.24204 | GCAACACGTTCGGCT GCATGCT CGGC AGCAAGC TTTTCCATGTAGCTG Rpic_4430 738407 - 738045 - | transcriptional regulator, TraR/DksA family TERM 512 738156 - 738123 - G 72 -3.1 -4.59773 | gap 1, overlap 738154 TTGCAGGCGTAAAAA CGGAATC-GCTTCG CCACAAT CGACGCAGATACCG TAGCTGTGCTGCTGC Rpic_4431 738985 - 738455 - | hypothetical protein Rpic_4432 739685 - 739032 - | transport-associated Rpic_4433 740558 - 739719 - | UspA domain protein Rpic_4434 741099 - 740599 - | UspA domain protein Rpic_4435 741386 - 741853 + | putative signal-transduction protein with CBS domains Rpic_4436 743295 - 741850 - | membrane protein-like protein TERM 513 742787 - 742748 - G 81 -9.4 -4.2558 | gap 1, overlap 742785 CATCGCGCAGCAAAA TGGCCCGTGTTGCCTGTCA GCA TGACAAGCAGCACA-ACCA GCCACAACGTGTGCG Rpic_4437 743449 - 744459 + | zinc-binding alcohol dehydrogenase family protein Rpic_4438 744540 - 744995 + | UspA domain protein TERM 514 745753 - 745779 + G 74 -5.1 -4.56597 | gap 2 CGCAAGAGACCAACT GCCATCCGTTCCG CTA CGGC-CGG-TGGC TTTTTGCGCACAACG TERM 515 746060 - 746084 + G 82 -15.7 -3.05816 | overlap 746062 GGCTGCGCGCTACTC CAGCGAGGGCG AAT CGCGCTCGCTG TTCCATAGCACGTCG Rpic_4440 745452 - 746345 + | hypothetical protein TERM 516 746453 - 746418 - f 82 -8.9 -4.37658 | opp_overlap 746404, overlap 746406 746405 AACCTCCTGACAAAA CGCTGTCAGGAGCCT TGCGTT AGGCTCCCGCCCACG ACTTGTTCCGTAGAC Rpic_4441 746589 - 752438 + | excinuclease ABC, A subunit TERM 517 752434 - 752492 + F 85 -15.9 -3.25823 | gap 1, opp_overlap 752424, overlap 752435 AGGAAGGCGAGACGG TCTAGCGTGGCGCGC-GGCGGTCTCCGC CCAG GTGGAGACCGCCGGCGTGGGGCGCAAGC TTCATGTGGCGCCAG TERM 518 752435 - 752491 + F 88 -19.4 -2.55351 | gap 1, opp_overlap 752424, overlap 752434 GGAAGGCGAGACGGT CTAGCGTGGCGCGC-GGCGGTCTCCGC CCAG GTGGAGACCGCCGGCGTGGGGCGCAAG CTTCATGTGGCGCCA TERM 519 753851 - 753806 - g 72 -8.9 -4.15044 | gap 1, opp_overlap 753807 GCGGCCCTGAAGAAA TCGCCCAGCCAGGTGGCGGC CGTATTT GCCGGCACC-GGCATGGCAA CGGATTCGCTGCTGA Rpic_4442 752636 - 754672 + | flagellar hook-associated 2 domain protein TERM 520 754848 - 754811 - f 82 -12.7 -3.67976 | gap 1 CTTAGGAAGTGGAAA CGCAAGCGCAT-GAGGCA CAC CGCCTCAACGCGCGCGCG TGACCTGCAAACATC TERM 521 755359 - 755370 + G 70 -2.2 -4.61527 | gap 1 CACTTCCTGTACATG CGCGG CAT CC-CG TTTTTCCCGAGTTTT Rpic_4443 755005 - 755535 + | hypothetical protein Rpic_4444 758391 - 755665 - | cell divisionFtsK/SpoIIIE TERM 522 758472 - 758442 - R 76 -12.5 -3.41051 | opp_overlap 758443, overlap 758443 CCACCGCCATGAGAA TCGCCCGGCCG AAAAACACG CGGCCGGGCGT TCTGGCAACACGTTT TERM 523 758471 - 758443 - R 78 -16 -2.64416 | opp_overlap 758443, overlap 758442 CACCGCCATGAGAAT CGCCCGGCCG AAAAACACG CGGCCGGGCG TTCTGGCAACACGTT TERM 524 758443 - 758471 + r 89 -16 -3.29043 | opp_overlap 758443 758442 CACCGCCATGAGAAT CGCCCGGCCG AAAAACACG CGGCCGGGCG TTCTGGCAACACGTT Rpic_4445 759843 - 758542 - | major facilitator superfamily MFS_1 Rpic_4446 760798 - 759896 - | SMP-30/Gluconolaconase/LRE domain protein Rpic_4447 761648 - 760803 - | NAD-dependent epimerase/dehydratase Rpic_4448 763251 - 761650 - | galactarate dehydratase Rpic_4449 764702 - 763293 - | Mandelate racemase/muconate lactonizing protein Rpic_4450 766073 - 764721 - | d-galactonate transporter TERM 525 765764 - 765742 - G 70 -5.4 -4.41348 | overlap 765743 GCGCCGGTAAAGAAA CCGATGGCAC CCT GCGCCAGCGT GAACAGCGACCACAG TERM 526 765892 - 765914 + g 75 -4.1 -4.65895 | gap 1, opp_overlap 765885 765894, overlap 765894 765896 AAAATATAGCCAAGC G-ACACGGCA TCGA TGCCGAGTTC TTTTTGCATGGCCGA TERM 527 765894 - 765911 + g 75 -6.9 -4.44608 | opp_overlap 765885 765894, overlap 765892 765896 AATATAGCCAAGCGA CACGGCA TCGA TGCCGAG TTCTTTTTGCATGGC TERM 528 766114 - 766147 + r 71 -6.6 -4.22132 | overlap 766119 766120 TCGTGCCGGTCGGTT CAAGTTGCCGGGTC CTGTGC GGCCCGGCGTGTTG TCTTTTTCTATTTAC Rpic_4451 767745 - 766174 - | Aldehyde Dehydrogenase TERM 529 767595 - 767585 - G 77 -8.2 -4.24002 | CGGTAAACGTCAAAA GCCG CGG CGGC CAGTTCAGCGGCACG TERM 530 767743 - 767759 + g 75 -7.3 -4.2803 | TTCGCCGCTCAATTG CATAAGG ATT CCTTGTG TTTTCGGTTGCGCTC Rpic_4452 768711 - 767773 - | 5-dehydro-4-deoxyglucarate dehydratase TERM 531 769229 - 769241 + G 70 -4.7 -4.36914 | opp_overlap 769208 CGGTCAAGCTGACGG CCGCG GGG CGCAG TTTTCTGCCCGACGC Rpic_4453 769051 - 769947 + | transcriptional regulator, LysR family Rpic_4454 770003 - 770368 + | hypothetical protein Rpic_4455 771306 - 770365 - | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein TERM 532 770626 - 770601 - G 80 -15.5 -2.84634 | gap 1 GCTGATACGACCACA CCTGC-GCGCGT ACC ACGCGCTGCAGG AAATCGCGCAGCGCG Rpic_4456 772498 - 771332 - | cytochrome c class I TERM 533 771612 - 771568 - G 79 -15 -3.02144 | gap 1, overlap 771600 CGATGGCGGCGAAGA CGCTCCAGGCGTCGGCGCCTG TCGC CACGCAACG-CGCCTGGAACG CGCGCGTTGGCGGTG TERM 534 771840 - 771788 - G 77 -13.2 -3.36327 | gap 1, overlap 771789 GCAGCGCACGGACAA CGCG-GGCAGCGCCACCGGCAGCGG CCAG CCGCCGGCGCGCACGCCGCCACGCG CGGCCAGCACCTTCA TERM 535 771831 - 771789 - G 74 -14.7 -2.61582 | gap 1, overlap 771788 CAGCGCACGGACAAC GCGGGCAGCGCCACCGGCAG CGGC CAGCCGCCGGCGC-GCACGC CGCCACGCGCGGCCA Rpic_4457 773310 - 772513 - | ABC transporter related Rpic_4458 774341 - 773304 - | binding-protein-dependent transport systems inner membrane component Rpic_4459 775384 - 774377 - | NMT1/THI5 like domain protein Rpic_4460 776273 - 775434 - | class II aldolase/adducin family protein Rpic_4461 777374 - 776283 - | Alkanesulfonate monooxygenase TERM 536 777640 - 777672 + G 70 -14.1 -2.62184 | AGCGCTGGCCACCAT TGCTCCGCAGCTGGC CGC GTCAGCCGCAGAGCA TGATCTGCAGGGCAA Rpic_4462 777572 - 778780 + | Acyl-CoA dehydrogenase type 2 domain Rpic_4463 778841 - 779500 + | cysteine dioxygenase type I Rpic_4464 779497 - 781146 + | Rhodanese domain protein Rpic_4465 781518 - 782405 + | protein of unknown function DUF6 transmembrane Rpic_4466 784433 - 782421 - | diguanylate cyclase/phosphodiesterase TERM 537 784346 - 784372 + g 76 -14.4 -3.08679 | opp_overlap 784338 GCAGGAAGCCGGCAA TGGTCAGTGCCG CAC CGGCACCGGCCA TATTGGCTCGCACCA Rpic_4467 785002 - 784430 - | putative transmembrane protein Rpic_4468 787014 - 784999 - | TonB-dependent receptor TERM 538 787176 - 787190 + r 70 -10 -3.53224 | opp_overlap 787173 787172 787176 787180, overlap 787180 CTGCTCTAAAACGGA GAACCG GCG CGGTTC TTTACCCCACCCCTG Rpic_4469 787692 - 787273 - | ATP synthase F1, epsilon subunit TERM 539 788828 - 788810 - g 81 -5.3 -4.85599 | gap 1, overlap 788811 CGCACCCGAGAAAAA GGCCGATG CGTT CATCG-CC AAAGTTATGGCAATG Rpic_4470 787929 - 788864 + | transcriptional regulator, LysR family Rpic_4471 788910 - 789593 + | HAD-superfamily subfamily IB hydrolase, TIGR01490 TERM 540 789630 - 789603 - T 95 -12.6 -4.20868 | overlap 789623 GCCTGAAAACAAGAA CGCCCGCCCGGC GTGA ACCATGCGGGCG TCTGCACTGAACAGT Rpic_4472 790876 - 789653 - | FAD dependent oxidoreductase TIGR03364 TERM 541 790841 - 790807 - G 90 -16.4 -3.36492 | GTGCCAAGCCCAGAA TGCCAGCCCCGACAAC CGC GACGTCGGTGCTGGCA TCCAGGCCCCCGGAA Rpic_4473 791902 - 790877 - | 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component Rpic_4474 792836 - 791958 - | phosphonoacetaldehyde hydrolase Rpic_4475 794644 - 792881 - | 2-aminoethylphosphonate ABC transport system, permease protein Rpic_4476 795794 - 794652 - | 2-aminoethylphosphonate ABC transport system, ATP-binding protein component Rpic_4477 796739 - 795873 - | transcriptional regulator, LysR family TERM 542 796322 - 796287 - G 81 -11.8 -3.89614 | gap 1, overlap 796288 TTCAATGCGCAGAAA GCGCGCGTCGTCCACGC GCT GCGACGACGACGC-CAC GTCAACGCGGTACTC TERM 543 797489 - 797472 - g 71 -12.7 -3.01712 | opp_overlap 797472 CGCCGGTCCCCAAGA CTGCCGC CGAC GCGGCAG GCAATGACGCGAACG Rpic_4478 797063 - 798766 + | putative hemagglutinin-related transmembrane protein TERM 544 798870 - 798842 - T 100 -21.7 -5.14626 | opp_overlap 798842 AGCATCAAAACAAAA GGCGCCGGGGGCA TTC CACCCCCGGCGCC TTTGCACTTCACTAC TERM 545 798842 - 798870 + T 100 -20.3 -3.6715 | opp_overlap 798842 AGCATCAAAACAAAA GGCGCCGGGGG CATTCCA CCCCCGGCGCC TTTGCACTTCACTAC Rpic_4479 801506 - 798921 - | aconitate hydratase 2 TERM 546 799723 - 799762 + g 81 -13.6 -3.55444 | GATGCATCCGACAGC TCGAACGCTTGCTCGACC TTCA GGTCAGGCAGGCCTTCGA TTTCGAGGATGCGGC Rpic_4480 801717 - 802055 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 547 802895 - 802867 - g 73 -11.8 -3.35679 | gap 1 GGCCGGCATGCAGAA TCGCGCACCGGTT TTTC AACCGGC-CGCGA AGTCCGAATAGAAAT Rpic_4481 802085 - 802906 + | Enoyl-CoA hydratase/isomerase Rpic_4482 803468 - 802935 - | protein of unknown function DUF962 Rpic_4483 803616 - 804347 + | transcriptional regulator, Crp/Fnr family TERM 548 806241 - 806231 - g 70 -4.6 -4.42238 | overlap 806232 GGATTCGAACGAAAA CGCG TTC CGCA TGGCCGGCTCGATGG Rpic_4484 804477 - 806579 + | translation elongation factor G TERM 549 806596 - 806626 + T 81 -16.1 -2.89564 | overlap 806599 806624 GTTTTTTTGCTTCAT CCGCTGCGGCCGC CGAGT GCGGCCGCAGTGC TGTGTGCGCTAGCCC TERM 550 806599 - 806623 + T 86 -18.6 -2.69799 | overlap 806596 TTTTTGCTTCATCCG CTGCGGCCGC CGAGT GCGGCCGCAG TGCTGTGTGCGCTAG Rpic_4486 808016 - 806859 - | Citrate transporter TERM 551 807353 - 807372 + g 71 -10.6 -3.59946 | opp_overlap 807336, overlap 807350 807348 GCACGTACAGCGCGA GCGCCGGC ACCA GCAGGCGC TTGTGTAATTCCACG TERM 552 808081 - 808034 - R 70 -4.8 -4.46652 | gap 1, opp_overlap 808046 808060 808061, overlap 808036 808056 808057 GAAAGAAAAAGGAAA CGTTGGCGCAAACGCGCGC AAATCAACCGG GCGCG-GTTTGCGCGGCCG ATTGTAGTGCGACTG Rpic_4487 808691 - 808158 - | transcriptional regulator, XRE family Rpic_4488 812455 - 809216 - | DNA polymerase III, alpha subunit TERM 553 810117 - 810107 - G 79 -2.4 -5.03145 | opp_overlap 810111 CAACGCCGCAAAAAA CGCC GCC GGCT CATGGCATTTCAGGA TERM 554 811180 - 811195 + g 88 -2.6 -5.29782 | gap 1 CTGCTGCCAGCGCTG TAC-GTG TCA CACCGTA TTTTTTGTAGATGTA Rpic_4489 814046 - 812463 - | hypothetical protein TERM 555 813096 - 813143 + gr 78 -14 -3.21218 | opp_overlap 813112 TGCCAGCGCGATCTC CACCGGCGTGGACGAAGCGG CATCCTCA CTGCTCCGGCCGCGCCGGCG TTCGTGCTCCAGCGT Rpic_4490 814935 - 813979 - | hypothetical protein TERM 556 814332 - 814286 - GR 70 -12.9 -2.86728 | gap 1 AGGATGGACAGCACA TCGGCGCCAGCCG-GCTCCAGC CCCA GCCGCAGCACCGCCGGCGACGA CTCACGCTGCGCCTG TERM 557 815231 - 815195 - R 100 -19.6 -4.58395 | opp_overlap 815201, overlap 815199 CCGAGCCTCCAAAAA CAAACACCCCAGCTCT GTGTA AGAGCTGGGGTGTTGG AGGGGAGAGCCTGGC TERM 558 815227 - 815199 - R 100 -19 -4.85782 | opp_overlap 815201, overlap 815195 GCCTCCAAAAACAAA CACCCCAGCTCT GTGTA AGAGCTGGGGTG TTGGAGGGGAGAGCC TERM 559 815201 - 815225 + r 83 -15.8 -3.01712 | opp_overlap 815199 815195 CTCCAAAAACAAACA CCCCAGCTCT GTGTA AGAGCTGGGG TGTTGGAGGGGAGAG TERM 560 817855 - 817866 + r 71 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC Rpic_4493 822433 - 821861 - | putative transmembrane protein Rpic_4494 822739 - 823944 + | fatty acid hydroxylase Rpic_4495 823962 - 824480 + | protein of unknown function DUF985 Rpic_4496 824603 - 824481 - | hypothetical protein TERM 561 824695 - 824676 - H 70 -10.8 -3.53563 | opp_overlap 824675 824674 824685 AGAGGGGGCTTCAAA GTCATTGC ACGA GCAATGAC GCTTCTTGCCCGCTA TERM 562 824764 - 824752 - H 70 -10.5 -3.53091 | opp_overlap 824758 ATCGCGCGTCGCAAA CGCCC GCC GGGCG CCGCTCTCATGCATC Rpic_4497 824906 - 825784 + | 2-hydroxy-3-oxopropionate reductase TERM 563 825823 - 825792 - T 87 -10.7 -4.4078 | opp_overlap 825790 825793, overlap 825793 TTGCTTGAAGCAAAA CGGGACGGCGCAC GCAACT GAGCGCCGCCCCT CCGTTTTACGACCTT TERM 564 825822 - 825793 - T 78 -14.2 -3.24146 | opp_overlap 825790 825793, overlap 825792 TGCTTGAAGCAAAAC GGGACGGCGCAC GCAACT GAGCGCCGCCCC TCCGTTTTACGACCT Rpic_4498 827256 - 825853 - | major facilitator superfamily MFS_1 Rpic_4499 828428 - 827328 - | porin Gram-negative type TERM 565 827724 - 827754 + g 86 -15.4 -3.21099 | opp_overlap 827681 827714 ACTCATCGGCGTCAT CACGCCGGGCACGA GCG TCGTGCCGAGCGTG TTCGTGATACCCAGG TERM 566 828573 - 828563 - R 85 -2.4 -5.41143 | overlap 828565 828566 828567 CAGGGCGCAAAAAAA GACG GCG CGGC TGGTCAGGCCGGCGC Rpic_4500 829555 - 828605 - | ferredoxin TERM 567 829278 - 829300 + g 71 -12 -3.21416 | opp_overlap 829294 CGCGGGCCGCCGATC TTGAGCGTCG AAC CGACGCGCAA TTGCTCGTGCACATA Rpic_4501 830539 - 829577 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_4502 832078 - 830576 - | Aldehyde Dehydrogenase TERM 568 832138 - 832106 - R 76 -9.8 -3.84451 | gap 1, overlap 832107 TCGCTTAAATCGAAA CGGCGTGTGCGC-GG TTGC CCAGCGCACGCACCA CGCTGAACACCGTCA Rpic_4503 832898 - 832095 - | Aspartate dehydrogenase Rpic_4504 834670 - 832931 - | thiamine pyrophosphate protein domain protein TPP-binding TERM 569 833622 - 833655 + g 71 -10.3 -3.68435 | gap 1, overlap 833621 833623 GCATCGTGTGCAGCG CGCAGGTCGGCGGCGA ATG TCGC-GTCGATCTGCA TCTTCTTTTCCAGCC TERM 570 833623 - 833654 + g 73 -13.8 -2.80579 | gap 1, overlap 833622 833621 CATCGTGTGCAGCGC GCAGGTCGGCGGCGA ATG TCGC-GTCGATCTGC ATCTTCTTTTCCAGC Rpic_4505 835472 - 834663 - | short-chain dehydrogenase/reductase SDR Rpic_4506 836296 - 835469 - | transcriptional regulator, IclR family Rpic_4507 837211 - 836309 - | alpha/beta hydrolase fold TERM 571 836464 - 836512 + g 100 -8.9 -5.0538 | gap 2, overlap 836465 CTTCCGGTGGTGTAA TGCCGTCGACATCGCCGCAAGCG ATCTG CGCTAGCGTCGAT-TCGG-GGCG TTTTTTCAGATAGGC TERM 572 836465 - 836511 + g 71 -10.2 -3.62746 | gap 2, overlap 836464 TTCCGGTGGTGTAAT GCCGTCGACATCGCCGCAAGCG ATCTG CGCTAGCGTCGAT-TCGG-GGC GTTTTTTCAGATAGG Rpic_4508 837752 - 837216 - | Cupin 2 conserved barrel domain protein TERM 573 837813 - 837801 - R 76 -6.9 -4.46926 | overlap 837803 TACTGCATGACAAAA CCGCC GTT GACGG CCAGCGTCTGGCCCG Rpic_4509 838558 - 837785 - | short-chain dehydrogenase/reductase SDR Rpic_4510 839618 - 838551 - | Rieske (2Fe-2S) domain protein Rpic_4511 840004 - 839699 - | hypothetical protein Rpic_4512 840753 - 840187 - | transcriptional regulator, TetR family TERM 574 840902 - 840937 + G 90 -16.2 -3.48276 | gap 1 TCGAGCGGCGCTCTC GCCGTTGCC-GCTGTGG CGC CTGCGGCTGGCAACGGC TTATATCGAAGAGAA Rpic_4513 840843 - 841244 + | transcriptional regulator, AraC family Rpic_4514 841769 - 841293 - | protein of unknown function DUF1348 TERM 575 841547 - 841593 + g 81 -16 -3.02461 | overlap 841549 GTTCCTTGATCAGGC GGTAGTCGAGTTCCTTGCGC CACTTGC GCGTGAGGAACTCGACGATC TGTTCGCGCCCGTTG TERM 576 841549 - 841591 + g 80 -15 -3.06815 | overlap 841547 TCCTTGATCAGGCGG TAGTCGAGTTCCTTGCGC CACTTGC GCGTGAGGAACTCGACGA TCTGTTCGCGCCCGT Rpic_4515 842380 - 841913 - | GCN5-related N-acetyltransferase TERM 577 842754 - 842779 + r 100 -16.2 -5.08255 | CTGCTGTCAACCTTG CAGCCCACCG TCCTCC CGGTGGGCTG TTTTCTTTTCAGGGT Rpic_4516 843039 - 842788 - | hypothetical protein TERM 578 843994 - 843962 - g 71 -9.2 -3.71848 | gap 1, overlap 843959 843963 TGGCCGCAGCAACAA CTGCCCC-GCAAGGT GCGA ACCTTGCTGGAGCAT CTGGCCGAGTTCGCA Rpic_4517 843146 - 844081 + | transcriptional regulator, LysR family Rpic_4518 844191 - 845219 + | alpha/beta hydrolase fold Rpic_4519 845360 - 845584 + | hypothetical protein Rpic_4520 846184 - 845612 - | putative transmembrane protein TERM 579 846053 - 846093 + g 72 -11.1 -3.53012 | gap 1, overlap 846054 CACAGCGGGGGTTGC GGGCGTCG-CGTTGGCCG ACGGCA CGGCCGACGACGACGCAG TTTGCGCAAACGCGG TERM 580 846054 - 846092 + g 75 -14.6 -2.71712 | gap 1, overlap 846053 ACAGCGGGGGTTGCG GGCGTCG-CGTTGGCCG ACGGCA CGGCCGACGACGACGCA GTTTGCGCAAACGCG Rpic_4521 847122 - 846250 - | aminotransferase class IV Rpic_4522 847283 - 847795 + | GCN5-related N-acetyltransferase Rpic_4523 847891 - 848208 + | putative signal peptide protein Rpic_4524 848955 - 848212 - | ABC transporter related Rpic_4525 850793 - 848967 - | ABC transporter related Rpic_4526 851850 - 850798 - | inner-membrane translocator Rpic_4527 852852 - 851965 - | transcriptional regulator, IclR family TERM 581 852874 - 852923 + H 77 -4.1 -4.93318 | gap 1, opp_overlap 852878 852879, overlap 852875 852879 852880 GGGCGCGTTAGACGA ATAAGTGCTGCGAG-CGTAGCACG TCA CGCGCTGCGTCCCGCCGCCTTTAC TTTTTATGCATTGTA TERM 582 852879 - 852918 + H 71 -6.2 -4.38116 | gap 1, opp_overlap 852878 852879, overlap 852875 852874 852880 CGTTAGACGAATAAG TGCTGCGAG-CGTAGCACG TCA CGCGCTGCGTCCCGCCGCC TTTACTTTTTATGCA Rpic_4528 853119 - 854078 + | beta-lactamase domain protein TERM 583 854316 - 854279 - g 83 -14.9 -3.2614 | gap 1, overlap 854280 GACCTTGCACAGCAA GGCGTGCCGGTCGTCGTC GTG GACGACGACTG-CACGCT GTCCACCGGCTCCCG TERM 584 854315 - 854280 - g 86 -18.4 -2.5547 | gap 1, overlap 854279 ACCTTGCACAGCAAG GCGTGCCGGTCGTCGTC GTG GACGACGACTG-CACGC TGTCCACCGGCTCCC Rpic_4529 854135 - 855814 + | monooxygenase FAD-binding Rpic_4530 855820 - 856026 + | hypothetical protein Rpic_4531 857116 - 856067 - | aldo/keto reductase Rpic_4532 858233 - 857316 - | transcriptional regulator, LysR family TERM 585 857500 - 857460 - G 71 -9.7 -3.76839 | gap 2, overlap 857461 GAACTCCAACCCAAA CGGCGGCGCCGCGC--GCT CGGCC AGCTTGCGCGGCACCGTCA CCACCAGATCGGTCG Rpic_4533 858368 - 858258 - | hypothetical protein Rpic_4534 858510 - 859856 + | homogentisate 1,2-dioxygenase TERM 586 860293 - 860264 - g 83 -9.1 -4.45544 | CTCCACCAAGGAAAA CCCGTCGCCACGC GCAG GCGTCGCGCTGGG CGATCAAGTCATCGA Rpic_4535 860163 - 861434 + | fumarylacetoacetase TERM 587 861442 - 861473 + T 77 -14.4 -2.74019 | gap 1, opp_overlap 861409 861436, overlap 861464 TGAACTAACGCGTCT CG-GGGCGGCGGACC GTC GGTCCGCCGCATGCG TCATTCCGCCTTGTC Rpic_4536 862112 - 861474 - | FMN-binding negative transcriptional regulator Rpic_4537 863546 - 862236 - | ABC transporter related Rpic_4538 865285 - 863552 - | binding-protein-dependent transport systems inner membrane component TERM 588 864178 - 864153 - G 73 -14 -2.83894 | ATCAGCACCATCACA CGCAGCAGCG TGAACG CGCCGCTGCG CGCCACGGTCGCCAC Rpic_4539 866580 - 865423 - | acyl-CoA dehydrogenase domain protein Rpic_4540 866693 - 867613 + | transcriptional regulator, LysR family Rpic_4541 868531 - 867614 - | transcriptional regulator, LysR family TERM 589 870124 - 870083 - g 89 -18.7 -3.14564 | GTACGCCGCCAGGAA GCGCTCGGCCTGGACATGC TCGT GCACGGCGAAGCCGAGCGC AACGACATGGTCGAA Rpic_4542 868652 - 870982 + | 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase TERM 590 871032 - 871007 - T 100 -14.7 -4.68724 | GCACGCAAGACAAAA CGCCAACCGGC CTGC GTCGGTTGGCG TCGCGCATGGGGTGG Rpic_4543 874200 - 871099 - | acriflavin resistance protein TERM 591 872928 - 872980 + g 72 -8.4 -4.19238 | gap 2, overlap 872930 CGATTTCCTGCGCGG CCTCCAGCGCCGCCT-CGTAG-GGCG GTT TGCCGTTACGCAGGTGGCGCACGATG TTTTCCACTTCGACG TERM 592 872930 - 872978 + g 71 -9.6 -3.69618 | gap 2, overlap 872928 ATTTCCTGCGCGGCC TCCAGCGCCGCCT-CGTAG-GGCG GTT TGCCGTTACGCAGGTGGCGCACGA TGTTTTCCACTTCGA Rpic_4544 875336 - 874197 - | efflux transporter, RND family, MFP subunit Rpic_4545 876910 - 875333 - | RND efflux system, outer membrane lipoprotein, NodT family Rpic_4546 877198 - 877043 - | hypothetical protein Rpic_4547 877385 - 878266 + | NADP oxidoreductase coenzyme F420-dependent TERM 593 878376 - 878418 + G 71 -14 -2.66216 | overlap 878375 TACACCCTCCTCTCC TGCCAGCCCGCACGCTGAGC GTC GCTCGGCTGGTGCGCTGGCG CTTCTCGTCGTGGGC TERM 594 878497 - 878534 + G 77 -11.2 -3.73072 | gap 1, opp_overlap 878496, overlap 878494 878498 CCCGTGCTCAAGCAG GTGGCCGCCGGCACCGG TCTCT CGGGTGCCG-CGGCCGG TTTGCTGACGACGTT TERM 595 878498 - 878533 + G 77 -14.7 -2.83522 | gap 1, opp_overlap 878496, overlap 878494 878497 CCGTGCTCAAGCAGG TGGCCGCCGGCACCGG TCTCT CGGGTGCCG-CGGCCG GTTTGCTGACGACGT Rpic_4548 878353 - 879567 + | major facilitator superfamily MFS_1 Rpic_4549 880144 - 879578 - | DNA-3-methyladenine glycosylase I Rpic_4550 881127 - 880156 - | Mg2 transporter protein CorA family protein Rpic_4551 881643 - 881146 - | transcriptional regulator, MarR family Rpic_4552 883298 - 881706 - | major facilitator superfamily MFS_1 TERM 596 883439 - 883413 - R 100 -15.1 -6.07627 | AGGCGCAAAAAAAAA GCGCCGCAGGC GTGTG GCCTCCGGCGC TCCGGGTGTCGCCAT Rpic_4553 886072 - 883487 - | aconitate hydratase 2 TERM 597 884289 - 884328 + g 81 -13.6 -3.55444 | opp_overlap 884254 884253, overlap 884277 GAGGCGTCCGACAGC TCGAACGCTTGCTCGACC TTCA GGTCAGGCAGGCCTTCGA TTTCGAGGATGCGGC Rpic_4554 886445 - 886738 + | Antibiotic biosynthesis monooxygenase Rpic_4555 887796 - 886852 - | permease of drug/metabolite transporter TERM 598 887016 - 886992 - G 73 -9.2 -3.9377 | gap 1, overlap 887007 AGAAGGCGAAGGAAA GCGGCGTGCGC AACA GCGCG-GCCGC CAAGGCCGCAGAAAA Rpic_4556 888797 - 887919 - | transcriptional regulator, LysR family TERM 599 889143 - 889179 + G 71 -7.9 -4.08394 | overlap 889172 GGGTGGGCTGCTGGC CACACTGGTGCAATTGC TCG GCACCTGCATCGGTGCG TTTTCCGCCCGGTAT Rpic_4557 888895 - 890478 + | NADH/Ubiquinone/plastoquinone (complex I) TERM 600 891653 - 891683 + G 100 -8.8 -5.0538 | overlap 891679 GCTGGAATGCGTCTG GCCCGCCGTGCAGA CCA TCGGCTTCGCGGGC TTTTTTGGCCTGCCC TERM 601 892087 - 892074 - g 73 -9.5 -3.88766 | AGCGTAGAGACCAAA GCGGC CCTT GCCGC CCGCGTGCTCCGCGC Rpic_4558 890499 - 893081 + | hypothetical protein Rpic_4559 893148 - 894335 + | acyltransferase 3 Rpic_4560 895143 - 894325 - | Methyltransferase type 11 TERM 602 894548 - 894490 - G 77 -11.5 -3.70417 | gap 1, overlap 894491 ATGACAGTAGGCAAA CGCCGGCGTGCG-CGCCGTATCCGCGCG GCTG CGCGCGGTCACGATGTCGCACGTGACCG GGCTTGCGAAACCGT Rpic_4562 895854 - 896477 + | transcriptional regulator, TetR family Rpic_4563 897556 - 896462 - | phenylacetate-CoA oxygenase/reductase, PaaK subunit Rpic_4564 898117 - 897566 - | phenylacetate-CoA oxygenase, PaaJ subunit Rpic_4565 898911 - 898111 - | phenylacetate-CoA oxygenase, PaaI subunit Rpic_4566 899208 - 898921 - | phenylacetate-CoA oxygenase, PaaH subunit Rpic_4567 900244 - 899225 - | phenylacetate-CoA oxygenase, PaaG subunit Rpic_4568 901837 - 900389 - | drug resistance transporter, EmrB/QacA subfamily TERM 603 901913 - 901895 - R 71 -8 -4.07246 | opp_overlap 901896 901897, overlap 901896 TCAGGTGAAACGAAA GCGGCCAC CTC GCGGCGGC CATTCGTTGCAACCA Rpic_4569 902368 - 901937 - | 3-demethylubiquinone-9 3-methyltransferase Rpic_4570 902900 - 902517 - | Ketosteroid isomerase-like protein TERM 604 902936 - 902950 + H 74 -6.4 -4.38154 | TGGTATCTCGTTCGC CAGCAC CTA GTGTTG TTTTGTGAACACTGT Rpic_4571 903022 - 903666 + | transcriptional regulator, TetR family Rpic_4572 903743 - 904264 + | putative transmembrane protein TERM 605 904298 - 904262 - T 73 -10.7 -3.59738 | overlap 904266 904269 CACGACAGCCCGAAA TGAAGCACGGCGGCGCA TTG CGCGCCGCCGCCATTCG CCGTCCGGGGCAATG TERM 606 904293 - 904266 - T 86 -13.4 -3.52472 | gap 1, overlap 904262 904269 ACAGCCCGAAATGAA GCACGGCGGCGCA TTG CGCGCCGCCGC-C ATTCGCCGTCCGGGG TERM 607 904291 - 904269 - T 86 -18.4 -2.89569 | overlap 904266 904262 GCCCGAAATGAAGCA CGGCGGCGCA TTG CGCGCCGCCG CCATTCGCCGTCCGG Rpic_4573 905269 - 904319 - | response regulator receiver modulated CheW protein TERM 608 905955 - 905981 + r 79 -9.4 -4.20042 | opp_overlap 905961, overlap 905960 905961 AAAACCGACGGGCAA AAAAAACCGGCC AAT GGCCGGCTTTTG TTTTGAACTCTTACT TERM 609 905960 - 905976 + r 100 -9.3 -5.09259 | opp_overlap 905961, overlap 905955 905961 CGACGGGCAAAAAAA ACCGGCC AAT GGCCGGC TTTTGTTTTGAACTC TERM 610 905961 - 905975 + r 82 -12.8 -3.64471 | opp_overlap 905961, overlap 905960 905955 GACGGGCAAAAAAAA CCGGCC AAT GGCCGG CTTTTGTTTTGAACT TERM 611 905975 - 905961 - R 100 -12.8 -5.76949 | opp_overlap 905961 905960 905955 GACGGGCAAAAAAAA CCGGCC AAT GGCCGG CTTTTGTTTTGAACT Rpic_4575 907307 - 906009 - | hypothetical protein TERM 612 907308 - 907324 + r 74 -6.5 -4.34402 | CGACATCATGTTCAT GCTGTGA GCC TCTCAGC TTTTGCTGTCGAGCG Rpic_4576 908341 - 907304 - | AAA ATPase Rpic_4577 911053 - 908351 - | Integrase catalytic region TERM 613 911118 - 911135 + H 100 -11.3 -5.13741 | overlap 911097 911129 GGCATAATTAGCCAT TCGGTCG TATA CGACCGA TTTTTGTTCGCTTCC Rpic_4578 911202 - 911501 + | hypothetical protein Rpic_4579 912053 - 911565 - | hypothetical protein TERM 614 911735 - 911764 + g 74 -12.9 -3.28712 | gap 1, opp_overlap 911735 CCACATCGCAACGAA GCCAGTCGCGACGG TCA CCGTA-CGACTGGC TTCTGCGCGGGAAAA TERM 615 911764 - 911735 - G 84 -15.1 -3.36785 | gap 1, opp_overlap 911735 CCACATCGCAACGAA GCCAGTCGCGACGG TCA CCGT-ACGACTGGC TTCTGCGCGGGAAAA Rpic_4580 912336 - 912725 + | hypothetical protein Rpic_4581 913329 - 913000 - | hypothetical protein Rpic_4582 913839 - 913687 - | hypothetical protein Rpic_4583 914383 - 914093 - | hypothetical protein Rpic_4584 915703 - 914690 - | hypothetical protein Rpic_4585 916713 - 915706 - | hypothetical protein TERM 616 917066 - 917048 - R 79 -8.8 -4.25848 | AAGCTCGCAGCAAAA CTCCCTTC CAA GGAGGGAG GTTGACAAAATAAAA TERM 617 917435 - 917391 - R 76 -6.3 -4.59773 | gap 1 TTTGACCGTGAAAAA CCTGGCGTATGAGCGCCCTG TGCAGG CCGGTCGC-CAGACGCAAGG ATATGAGGACATGTG TERM 618 917769 - 917736 - R 72 -2.3 -4.84914 | overlap 917755 AGTCACACAACAAAA CGCCGC-GCTGGTGG ACGAAG CCTCC-GCAGCCGCG CATGCGATGGCCGAC TERM 619 917994 - 918019 + r 100 -14 -4.18441 | opp_overlap 917994 TTAGGGCACAAAAAA GGCCGTTCCG ATTTGC CGGAGCGGCC TTTCTGCTTGTTTCT TERM 620 918019 - 917994 - R 100 -12.5 -5.26316 | opp_overlap 917994 TTAGGGCACAAAAAA GGCCGTTCCGA TTTG CCGGAGCGGCC TTTCTGCTTGTTTCT TERM 621 918110 - 918126 + r 71 -7.9 -4.11216 | opp_overlap 918105 CTCGCAACGATCAGC CTGCAGC CAG GCTGCCG TTTTCCAAGTGCACA Rpic_4587 918830 - 918105 - | 17 kDa surface antigen Rpic_4588 919400 - 919197 - | hypothetical protein TERM 622 919524 - 919547 + H 70 -3.1 -4.65916 | gap 1, overlap 919503 919502 CATGAGCTCGCTTCA GTCTGCG-GA GCTCA TCGCGCAGTC TTTTCTTGAACTCCC Rpic_4589 920374 - 920766 + | hypothetical protein Rpic_4590 920934 - 921584 + | hypothetical protein Rpic_4591 922150 - 921848 - | hypothetical protein Rpic_4592 923190 - 922432 - | protein of unknown function DUF347 TERM 623 922633 - 922615 - G 77 -11 -3.78934 | GGCGGCCCAGAACAA CAGCGTGC GCG ACACGCTG CTCCAGTAATAGGCT TERM 624 922974 - 922995 + g 71 -9.5 -3.75153 | gap 1, opp_overlap 922974, overlap 922978 TTGTGGTCCAGTAAA GCAA-GGGGT GGA ACCCCTTTGC TTTGACTTGGGCGAA TERM 625 922995 - 922974 - G 71 -9.5 -3.72576 | gap 1, opp_overlap 922974 922978 TTGTGGTCCAGTAAA GCAA-GGGGT GGA ACCCCTTTGC TTTGACTTGGGCGAA TERM 626 922978 - 922990 + g 76 -9.1 -4.10672 | opp_overlap 922974, overlap 922974 GGTCCAGTAAAGCAA GGGGT GGA ACCCC TTTGCTTTGACTTGG TERM 627 923047 - 923029 - G 100 -5.3 -5.75342 | gap 1, overlap 923032 GGTTGCCAAAAAAAA CAC-GGCA AAGA TGCCAGTG CCAACCAGGTATCCA TERM 628 923155 - 923130 - G 70 -11.2 -3.33261 | opp_overlap 923144 923151, overlap 923137 CGGCAATCTTGATAA GCCAGAAGCC CAACGT GACTTCTGGC ACCTTGGTCAGTGCA TERM 629 923215 - 923235 + H 74 -11.2 -3.53224 | TCGTAGCCAGGCATT GCCTTCGA ACCTG TCGAAGGC TTTCAGCCGAACATC TERM 630 923510 - 923490 - H 100 -10.4 -5.41143 | overlap 923491 GATTGTTTAAAAAAA CGCTCGCC GTGCA GGCGAGCA GAAGAGTCGGCCCCA TERM 631 923509 - 923491 - H 80 -11.7 -3.83963 | overlap 923490 ATTGTTTAAAAAAAC GCTCGCC GTGCA GGCGAGC AGAAGAGTCGGCCCC Rpic_4594 923899 - 925212 + | major facilitator superfamily MFS_1 Rpic_4595 925890 - 925330 - | alkylhydroperoxidase like protein, AhpD family Rpic_4596 926182 - 925934 - | hypothetical protein Rpic_4597 926767 - 926216 - | RNA polymerase, sigma-24 subunit, ECF subfamily Rpic_4598 926980 - 926771 - | hypothetical protein Rpic_4599 927526 - 927086 - | hypothetical protein Rpic_4600 928367 - 927639 - | cytochrome c biogenesis protein transmembrane region TERM 632 928231 - 928214 - G 71 -9.1 -3.72576 | TGGTCGCGTAGGAAA TCGCCAG GCCA CCGGCGA GCGCGAGCGGCGCCC Rpic_4601 928753 - 928367 - | Thioredoxin domain TERM 633 928856 - 928843 - H 85 -2.3 -5.42259 | overlap 928823 GCAGCCCGAAAAAAA TCGTG GTGC CGCGA ACCCGTTTCCTGTCC Rpic_4602 928937 - 929176 + | hypothetical protein Rpic_4603 929146 - 929874 + | hypothetical protein Rpic_4604 931086 - 930187 - | transcriptional regulator, LysR family TERM 634 931099 - 931130 + H 74 -6 -4.48449 | gap 1 CACTCGTTCTCCTTT GAAGCACACCATGTT GCC AATATGCTG-GCTTC TTTCTATTTTCATGC Rpic_4605 931152 - 931718 + | hypothetical protein Rpic_4607 932054 - 932422 + | copper resistance protein CopC Rpic_4608 932422 - 933366 + | copper resistance D domain protein Rpic_4609 933578 - 935938 + | heavy metal translocating P-type ATPase Rpic_4610 937123 - 936293 - | disulfide isomerase/thiol-disulfide oxidase TERM 635 936963 - 936994 + g 77 -5 -4.64861 | overlap 936950 936948 GCTGTCAGCCCAGTC GGGGCCGCCATCTT TCCG ACGATGGTCACCCC TTTCTTTTCCAGCGC Rpic_4611 937217 - 938332 + | transcriptional regulator, TetR family Rpic_4612 938591 - 940423 + | diguanylate cyclase/phosphodiesterase TERM 636 940745 - 940712 - g 75 -6.6 -4.42386 | opp_overlap 940714, overlap 940713 940714 GCGTGACTCAGAAAA CTTCAACGGCGCGT TTCCGC ACGCGCCGCCGATT GCTTGGCGCAGCCGC TERM 637 940743 - 940714 - g 70 -13.6 -2.54745 | opp_overlap 940714, overlap 940713 940712 GTGACTCAGAAAACT TCAACGGCGCGT TTCCGC ACGCGCCGCCGA TTGCTTGGCGCAGCC TERM 638 941424 - 941448 + G 77 -11.4 -3.73402 | GGCCAACTATTACTT CAGCGACGTG CCGTT CACGGCGCTG TTTGGTACCAAGTAT Rpic_4613 940699 - 942123 + | Phospholipase C Rpic_4614 942127 - 943341 + | phosphoesterase TERM 639 944336 - 944362 + G 71 -9.3 -3.70919 | overlap 944337 TTTCTCTCCGGATAC GGGGCCGCGCA GGCGG TGCCCGGCCCG TTGTTCACCTTTGCC Rpic_4615 943496 - 944722 + | chromate transporter, chromate ion transporter (CHR) family TERM 640 944980 - 944941 - T 74 -11.5 -3.53444 | overlap 944942 944945 GGACGGTTTTCGAAA CCGACG-GCGCCCGCCCCA ACGC TGGGACGGGCGCGCAT-GA CGCACTACCGGCCGA TERM 641 944975 - 944945 - T 83 -16.9 -2.64155 | gap 1, overlap 944942 944941 GGTTTTCGAAACCGA CGGCGCCCGCCCCA ACGC TGGGACGGGCG-CG CATGACGCACTACCG Rpic_4616 945176 - 944985 - | 4-oxalocrotonate tautomerase family enzyme Rpic_4617 946267 - 945221 - | 4-hydroxy-2-oxovalerate aldolase Rpic_4618 947216 - 946281 - | acetaldehyde dehydrogenase (acetylating) Rpic_4619 948045 - 947254 - | 4-oxalocrotonate decarboxylase Rpic_4620 948857 - 948075 - | 2-oxopent-4-enoate hydratase Rpic_4621 949734 - 948883 - | alpha/beta hydrolase fold Rpic_4622 951185 - 949731 - | 2-hydroxymuconic semialdehyde dehydrogenase TERM 642 951251 - 951276 + r 74 -12.6 -3.23216 | gap 1, opp_overlap 951243 CACGACAGGCCGATC GCGTGCAGCCC TGCAC GGGC-GCACGC TTCGTCCTGCTCAGC Rpic_4623 951687 - 951235 - | protein of unknown function DUF336 Rpic_4624 952690 - 951746 - | catechol 2,3 dioxygenase Rpic_4625 953079 - 952714 - | ferredoxin Rpic_4626 954159 - 953095 - | Oxidoreductase FAD-binding domain protein TERM 643 953946 - 953980 + g 82 -15.9 -3.05816 | gap 1 ACGCCAGCGTCTTGC CCTCTTCGCGCTCGAT ATCC AT-GAGCGCGAAGGGG TTGGCTGCACCGTGA Rpic_4627 954528 - 954163 - | Phenol hydroxylase conserved region TERM 644 954442 - 954418 - G 71 -12.2 -3.28924 | opp_overlap 954429 954429 GACCGGCGCGCAGAA CATCAGGTGG TCTTC CCACCCGATG TAGAGCAGCGGCGCG Rpic_4628 956069 - 954525 - | methane/phenol/toluene hydroxylase Rpic_4629 956384 - 956115 - | monooxygenase component MmoB/DmpM Rpic_4630 957427 - 956420 - | Phenol 2-monooxygenase Rpic_4631 957692 - 957483 - | Phenol hydroxylase subunit TERM 645 959020 - 959056 + G 71 -9.4 -3.71649 | gap 1 TTACCAACATGCAGT TCCTCGGTCTC-GCGGC CGAC GCTGCAGAGGCGGGGGA TTTCACCTTTGCCAG Rpic_4632 958407 - 959912 + | methane/phenol/toluene hydroxylase TERM 646 959918 - 959904 - f 77 -8.5 -4.35483 | CGCTACCAGAAGAAA GCCGC TTGAG GCGGC ACGCAAACGGAGGAC TERM 647 960055 - 960011 - g 75 -7.9 -4.2349 | gap 3, overlap 960013 960047 GGTGGATACGGAAAA CACCATCGACGAGGTG-GCCGC AGCA GCGGCACACCAC-TCGGTGG-G ACGCCGCGTGGCACC TERM 648 960054 - 960013 - g 77 -11.6 -3.71913 | overlap 960011 960047 TGGATACGGAAAACA CCATCGACGAGGTG-GCCGC AGCA GCGGCACACCAC-TCGGTGG GACGCCGCGTGGCAC Rpic_4633 959937 - 960197 + | Toluene-4-monooxygenase system B Rpic_4634 960205 - 960540 + | Rieske (2Fe-2S) domain protein Rpic_4635 960560 - 960874 + | monooxygenase component MmoB/DmpM Rpic_4636 960887 - 961876 + | methane/phenol/toluene hydroxylase TERM 649 962363 - 962387 + G 72 -12.7 -3.12327 | overlap 962361 CGCGCTGCTGTATCC GCCGCACGCGC CTG GCGCGCGCGCC TATTCCATGTCCAAC Rpic_4637 961914 - 962945 + | Oxidoreductase FAD-binding domain protein TERM 650 964246 - 964269 + G 76 -13.8 -3.14344 | opp_overlap 964226 CGGCCCGGGCGCTTC GAGCGCGCCG ACGG CGGCACGCTC TTCCTCGACGAGATC Rpic_4638 963199 - 964977 + | putative sigma54 specific transcriptional regulator TERM 651 965030 - 964973 - T 100 -23.5 -3.06796 | gap 1, overlap 964953 964982 TTCCAGTCGATGGAA GCTGA-GACACGACAGCCCGGGCGACAG GCT CCGTCGCCCAGGCTGCCGTGCCCTCGTC CCTACAAGCCCTAGA TERM 652 965020 - 964982 - T 100 -26.8 -2.9186 | overlap 964973 ATGGAAGCTGAGACA CGACAGCCCGGGCGACAG GCT CCGTCGCCCAGGCTGCCG TGCCCTCGTCCCTAC Rpic_4639 966417 - 965041 - | membrane protein involved in aromatic hydrocarbon degradation TERM 653 967696 - 967720 + G 85 -16.4 -3.15544 | GCGCGCCCTGCATCA GGGGTCGGCC CGCGC GGCCGGCCCC TTCGTGGCCGTCAAC Rpic_4640 966863 - 968557 + | putative sigma54 specific transcriptional regulator TERM 654 969256 - 969214 - g 76 -14 -3.14132 | CTGGCCCGGCAGGAA GCGCGTGCCGCATTGGCGCT GGA AGCGCATATCCGGCTCACGC ACGAATTGCTCGTCA Rpic_4641 968554 - 969303 + | transcriptional regulator, GntR family Rpic_4642 972048 - 969388 - | formate dehydrogenase, alpha subunit TERM 655 969812 - 969845 + g 71 -9.5 -3.72893 | gap 1, opp_overlap 969812, overlap 969812 969815 TTGCTGCCGACAAAC G-CGTCCCGGTGCAGC ACG GCTGTCCCGGGGTGAC TTTGGTCAAGGCATG TERM 656 970948 - 970937 - G 79 -7.2 -4.50976 | opp_overlap 970947 CCGCAGACCAGAAAA GCGC TCGC GCGC TCGATGTCGTCGAAG Rpic_4643 973478 - 972036 - | NADH dehydrogenase (quinone) TERM 657 972318 - 972278 - G 72 -13.3 -3.12668 | overlap 972270 CGCCAAAGCGCAAGA CCTCGGCGACGATGCGC GCGATCG GCGTATCGTCCCCGAAG GCAATCACTCCGCCA Rpic_4644 973724 - 975490 + | AMP-dependent synthetase and ligase Rpic_4645 975487 - 976512 + | pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit Rpic_4646 976509 - 977492 + | Transketolase central region Rpic_4647 977530 - 978657 + | catalytic domain of components of various dehydrogenase complexes Rpic_4648 978654 - 978923 + | hypothetical protein Rpic_4649 979406 - 978978 - | hypothetical protein Rpic_4650 980888 - 979488 - | multi-sensor signal transduction histidine kinase Rpic_4651 981255 - 981593 + | sigma 54 modulation protein, putative Rpic_4652 981597 - 981836 + | hypothetical protein TERM 658 982043 - 982026 - f 70 -12.7 -2.87211 | opp_overlap 982014 ACCTGCGCGGAGACA GCGCGTC TCCT GACGCGC AAGCATGTGGAGTCC Rpic_4653 982190 - 983827 + | chaperonin GroEL Rpic_4654 983869 - 985230 + | nicotinate phosphoribosyltransferase Rpic_4655 986009 - 985338 - | protein of unknown function DUF542 ScdA domain protein TERM 659 987352 - 987295 - g 80 -14.2 -3.40403 | gap 3 GTTTCTGGAGCACAA CCGGGCGCGTCTCGGCTTGCGCAGCCTGA GGC TCAGCCCG-G-ATGCCGAG-CGCGCCCTG CGCAGCTATCCATGG Rpic_4656 986174 - 987709 + | transcriptional regulator, NifA subfamily, Fis Family Rpic_4657 987896 - 989947 + | anaerobic ribonucleoside-triphosphate reductase Rpic_4658 989944 - 990120 + | hypothetical protein TERM 660 990159 - 990130 - gf 78 -15.8 -2.54896 | gap 1, opp_overlap 990127 990126, overlap 990126 990135 CGCTGAGCCAACGCA GTACACGCCGCCG GCCAT CGGCGGCGTG-AC GCCCTTCTCCAGCGT TERM 661 990155 - 990135 - gf 80 -15.4 -2.83112 | opp_overlap 990127 990126, overlap 990130 990126 AGCCAACGCAGTACA CGCCGCCG GCCAT CGGCGGCG TGACGCCCTTCTCCA Rpic_4659 990083 - 990796 + | anaerobic ribonucleoside-triphosphate reductase activating protein Rpic_4660 990801 - 991478 + | transcriptional regulator, Crp/Fnr family Rpic_4661 992000 - 991575 - | DGC domain protein Rpic_4662 992449 - 992033 - | hypothetical protein TERM 662 992335 - 992306 - G 71 -10.5 -3.66654 | overlap 992307 CACCGTAATGGCAAA GCGCCGCCCCTCG AGTT CGGGCGGCGGCGT CAGCCATGACAGGCG TERM 663 992334 - 992307 - G 73 -14 -2.79671 | overlap 992306 ACCGTAATGGCAAAG CGCCGCCCCTCG AGTT CGGGCGGCGGCG TCAGCCATGACAGGC Rpic_4663 993330 - 992446 - | peptidase U32 Rpic_4664 994357 - 993341 - | peptidase U32 Rpic_4665 995685 - 994402 - | putative transmembrane protein Rpic_4666 995921 - 997237 + | major facilitator superfamily MFS_1 TERM 664 997505 - 997451 - g 70 -11.3 -3.33261 | overlap 997475 GGTCAACCTCGACAA GGCAGGCTTTGCGCTGACCAAGAAC CAGAT GTTCTGGCTCACCGCGCTGCCTGCC CTGTCGGGGGCCACC Rpic_4667 997287 - 998672 + | nitrite transporter Rpic_4668 999353 - 998685 - | protein of unknown function DUF161 TERM 665 999928 - 999901 - g 78 -16.2 -2.71364 | opp_overlap 999886 999901 GGACCTGCCCAACCA CGAGCCGCGCGG CTGC CCGCGCGGCGCA TCGTATAGCTGGTAC TERM 666 999901 - 999928 + G 70 -14 -2.65264 | opp_overlap 999901, overlap 999886 GGACCTGCCCAACCA CGAGCCGCGCGG CTGC CCGCGCGGCGCA TCGTATAGCTGGTAC Rpic_4669 999638 - 1003375 + | nitrate reductase, alpha subunit Rpic_4670 1003372 - 1004916 + | nitrate reductase, beta subunit Rpic_4671 1004934 - 1005635 + | nitrate reductase molybdenum cofactor assembly chaperone Rpic_4672 1005632 - 1006315 + | respiratory nitrate reductase, gamma subunit TERM 667 1006743 - 1006766 + G 70 -5.8 -4.24342 | opp_overlap 1006737, overlap 1006739 GCAACCAATGCGCCG CTGGCGTTGG ACCG CCCGCGCCTG TTTCTTGATCAGCCG Rpic_4673 1006317 - 1006838 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 668 1008276 - 1008238 - g 77 -12.4 -3.61398 | overlap 1008272 GCGGTGGTGGAAGAA CGCAACCTCGTCGCGCAG GGG CTGCACGACAGCATTGCG CAGGGGCTCAACTTC Rpic_4674 1006900 - 1008855 + | multi-sensor signal transduction histidine kinase TERM 669 1009185 - 1009159 - g 77 -11.5 -3.79787 | gap 1 GCAGACGAACTGAAA GCCGCGTTGCGC GATG GCGCG-CGCGGC TACCTGCTCAAGAAC Rpic_4675 1008883 - 1009539 + | two component transcriptional regulator, LuxR family Rpic_4676 1009749 - 1010891 + | methyltransferase small Rpic_4677 1012146 - 1010878 - | HI0933 family protein Rpic_4678 1012366 - 1013202 + | hypothetical protein Rpic_4679 1014723 - 1013251 - | diguanylate cyclase Rpic_4680 1015286 - 1017502 + | Peptidase M1 membrane alanine aminopeptidase TERM 670 1017554 - 1017511 - T 91 -13.8 -3.84246 | gap 1, opp_overlap 1017507, overlap 1017515 GCGGTAAGCACCAAA GCAAGCGGGCCGCTTCCCGTG TGT CTTGGGAAGCAGCCCGCT-GT AACGTTGGCTCCTGA TERM 671 1017551 - 1017515 - T 100 -20.1 -3.59233 | opp_overlap 1017507, overlap 1017511 TAAGCACCAAAGCAA GCGGGCCGCTTCCCGTG TGT CTTGGGAAGCAGCCCGC TGTAACGTTGGCTCC TERM 672 1017574 - 1017592 + T 100 -16 -4.8048 | TTGGCTCCTGATTTC CGGCGGAC ATG GTCCGCCG TTTTTCATGTGCGCA Rpic_4681 1017942 - 1017619 - | nitrogen regulatory protein P-II Rpic_4682 1021088 - 1017939 - | heavy metal efflux pump, CzcA family TERM 673 1018783 - 1018795 + g 71 -10.5 -3.67141 | TCCGTGGCTTCCTTG CCGCC GAT GGCGG TTTCGATCACGTTGT Rpic_4683 1022305 - 1021085 - | efflux transporter, RND family, MFP subunit TERM 674 1021501 - 1021514 + g 76 -9.5 -4.09739 | CCTGCCCTGCACGCA CGCCG GCAG CGGCG TTTTCGGGCACTTCA Rpic_4684 1023648 - 1022302 - | outer membrane efflux protein TERM 675 1023607 - 1023582 - G 75 -7.5 -4.23999 | gap 1, overlap 1023584 GCACAGCGAAAAGAA CAGCACGTCGCG ACG CGCG-CGCACCG GCTGCGGGGCGCGGA Rpic_4685 1024289 - 1023762 - | putative transmembrane protein Rpic_4686 1025837 - 1024341 - | integral membrane sensor signal transduction histidine kinase TERM 676 1024563 - 1024505 - G 73 -12.2 -3.31144 | opp_overlap 1024524 TGCCGAGCTCGACAA TCCGCCGCACGATCGCGAGTCCCAGGCC ACT GCCCTGCGATTGGCTCTCGCGCGGCCGA TAGAAGCGTTCGAAC Rpic_4687 1026499 - 1025834 - | two component transcriptional regulator, winged helix family TERM 677 1026013 - 1026032 + g 76 -13.6 -3.06162 | GATGGGCGCGGCGCA CCAGCTCC AGCA GGAGCTGG TATTCGCGTGGCGTC TERM 678 1026569 - 1026529 - H 86 -13.3 -3.54129 | gap 2, overlap 1026533 CAGATGGGCGGTAAA CGGAC--AGCCGGCACCGG GGACA CCGGCGCCGGCAAAGTCCG GAATCTACCGCAACG TERM 679 1026563 - 1026533 - H 72 -13.9 -2.64155 | overlap 1026529 TGGGCGGTAAACGGA CAGCCGGCACCGG GGACA CCGGCGCCGGCAA AGTCCGGAATCTACC TERM 680 1026801 - 1026815 + H 72 -2.8 -4.82667 | ACCGCTTCACTTCGA TGGC GGCCTGA GCCA TTTTTGGTGTCATCG TERM 681 1026916 - 1026896 - H 70 -4.7 -4.57073 | gap 1, overlap 1026897 1026898 CACCCCCCCTAAAAA TC-CGCGC ACGGCG GCGCGTGA CCCCATTAAAATGCG Rpic_4688 1027087 - 1028103 + | diguanylate cyclase Rpic_4689 1028157 - 1029281 + | MscS Mechanosensitive ion channel Rpic_4690 1030162 - 1029278 - | putative transmembrane protein Rpic_4691 1031883 - 1030165 - | hypothetical protein Rpic_4692 1032122 - 1031898 - | conserved hypothetical signal peptide protein Rpic_4693 1033620 - 1032358 - | UDP-N-acetylglucosamine 2-epimerase TERM 682 1033690 - 1033655 - R 77 -11.8 -3.64703 | gap 1 TCCGCCGCATCGAAA GTG-CGACGACGGATGC GTC GCTTCCGACGCCGGCAC AGACTCCGCCGTTGA Rpic_4694 1035592 - 1033868 - | conserved hypothetical signal peptide protein Rpic_4695 1037700 - 1035589 - | General secretory system II protein E domain protein TERM 683 1038215 - 1038199 - R 82 -8.7 -4.30719 | overlap 1038213 CGTCTCGAGAACAAA GCCTTGC CGG ACAAGGC TGCGCGCAGCACGGC TERM 684 1038236 - 1038213 - R 72 -11 -3.28791 | gap 1, overlap 1038199 AGCCTTGCCGGACAA GGCTGCG-CGC AGC ACGGCGCAGCC GACGCACGATCCACA TERM 685 1038396 - 1038378 - R 100 -13.1 -4.33258 | opp_overlap 1038378 ACGCTGAAACACAAA GCCGCGC TCTAG GCGCGGC TTTCATGGGCTGGCG TERM 686 1038378 - 1038396 + r 91 -13.8 -3.74693 | opp_overlap 1038378 ACGCTGAAACACAAA GCCGCGCT CTA GGCGCGGC TTTCATGGGCTGGCG Rpic_4696 1040250 - 1038424 - | methyl-accepting chemotaxis sensory transducer TERM 687 1040344 - 1040358 + r 75 -7.8 -4.21812 | overlap 1040346 AACAGATGTGGCTAG TACGGC ACC GCCGTG TTGTTTTCAATGCGG Rpic_4697 1041050 - 1040340 - | 17 kDa surface antigen TERM 688 1040607 - 1040573 - G 72 -13.4 -3.14881 | CAACCTGGTGACCAA GGAGGCCGCCCACGAC GCC GCCGAGCACGGCCCCC ACGCCAGTGGGCTGG TERM 689 1041017 - 1041034 + g 78 -14.1 -3.29727 | overlap 1041016 CCCACCGCCCAGCGC GGCCGGC GCGT GCCGGCC TGTTCGTTGCTTGCA TERM 690 1041074 - 1041119 + H 76 -13.2 -3.01924 | gap 1, opp_overlap 1041075, overlap 1041111 CCGTCTTGTGAGCGA AGCGTCTGGCC-CGGGCCGGG TCGGT CCCGGCCTGGGGCTATGCGCC TCTTGCCGCGAAGTC Rpic_4698 1041306 - 1042238 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_4699 1043536 - 1042280 - | Extracellular ligand-binding receptor Rpic_4700 1043789 - 1044442 + | transcriptional regulator, TetR family TERM 691 1044456 - 1044444 - f 75 -7.7 -4.24342 | CCGCGCAGGAATAAA TCGTG CTG CACGA GGCGCATCGGATTGC TERM 692 1045318 - 1045344 + F 88 -7.3 -4.96848 | gap 2 CGGCGCGCGCTGGTG GGCCTG-GCC-CT GAT GGCGGCGCAGGCC TTTTTCTATAACGCG TERM 693 1045767 - 1045792 + F 73 -4.5 -4.58395 | overlap 1045769 1045781 ACTGTTCGGCTGGCT GATCGACACGC ATTC GCGTGGCGCCC TTTTTGGCGGCTACG TERM 694 1045781 - 1045809 + F 70 -10.3 -3.54741 | gap 1, overlap 1045769 1045767 TGATCGACACGCATT CGCGTGGC-GCC CTTTTT GGCGGCTACGCG TTTGGCGCGGTGCTG Rpic_4702 1046001 - 1046435 + | histidine triad (HIT) protein TERM 695 1046445 - 1046488 + T 74 -6.7 -4.35604 | opp_overlap 1046437, overlap 1046448 GAGTAAGCGCGACGG CTACGGCGCAGG-GGATGACG TTAT CG-CATCCACCTGCGCGATCG TTTCTTCTGCGTTCC Rpic_4703 1046971 - 1046609 - | hypothetical protein TERM 696 1046772 - 1046754 - G 71 -8.1 -4.13767 | gap 1, overlap 1046755 TCGGTGACCGCAAAA CGCGCCGG CATG CCGGC-CG CCGGTTCACCGGACA Rpic_4704 1048669 - 1047146 - | peptidase M20 Rpic_4705 1048849 - 1050267 + | transcriptional regulator, GntR family with aminotransferase domain TERM 697 1050470 - 1050434 - g 80 -15.2 -3.07994 | gap 1, opp_overlap 1050440, overlap 1050437 1050440 GCCAAGCTGACCGAA GAACCACCGGATACGCC GCAC GGCG-ACCCGGTGGTGC GCGCTGCGCGGCGTA TERM 698 1050493 - 1050437 - g 100 -22.4 -3.68341 | gap 2, opp_overlap 1050440, overlap 1050434 1050440 AAGCTGACCGAAGAA CCACCGGATACGCCGCACGGCG-AC-CC GGT GGTGCGCGCTGCGCGGCGTATCCGGTCG GTTGACGCGGCCGGC TERM 699 1050440 - 1050490 + G 100 -21.9 -2.52464 | gap 1, opp_overlap 1050434 1050437 1050440 CTGACCGAAGAACCA CCGGATACGCCGCACGGCGACCCG GTGG TGCG-CGCTGCGCGGCGTATCCGG TCGGTTGACGCGGCC TERM 700 1050490 - 1050440 - g 100 -22.7 -2.94872 | gap 2, opp_overlap 1050440, overlap 1050434 1050437 CTGACCGAAGAACCA CCGGATACGCCGCACGGCG-AC-CC GGT GGTGCGCGCTGCGCGGCGTATCCGG TCGGTTGACGCGGCC Rpic_4706 1050350 - 1050805 + | hypothetical protein TERM 701 1050890 - 1050870 - T 100 -13.9 -5.37593 | TCGGAAATGAAAAAA GGCGGCCGG ACC CGGGCCGCC GAAGGAGACACCGCC Rpic_4707 1051689 - 1050910 - | Enoyl-CoA hydratase/isomerase Rpic_4708 1052120 - 1051686 - | transcriptional regulator, MarR family Rpic_4709 1053004 - 1052117 - | alpha/beta hydrolase-like protein Rpic_4710 1053121 - 1053477 + | transcriptional regulator, ArsR family TERM 702 1054009 - 1054025 + G 71 -7.9 -4.08216 | GGAGCGCACGTACGA CGCGCCA CGC TCGCGCG TTTTCCGGGCGCTGA Rpic_4711 1053461 - 1054414 + | Activator of Hsp90 ATPase 1 family protein Rpic_4712 1055672 - 1054551 - | Beta-ketoacyl-acyl-carrier-protein synthase I TERM 703 1055139 - 1055169 + g 82 -16.1 -3.17212 | gap 1 GGGGCTCACCACGAG CGCCGCGCGC-GCG GTGC CGCTGCGCACGGCG TTGATGGCCTGCTCC TERM 704 1055710 - 1055745 + H 82 -11.8 -3.98913 | opp_overlap 1055710 1055713 1055715, overlap 1055711 1055713 GTGGCGGCGACGATA GCACATCGGATGGGCC GAGC GGCCCGTACGGTGTGG TTGTTTACGTCTAGG TERM 705 1055711 - 1055744 + H 80 -15.3 -2.98866 | opp_overlap 1055710 1055713 1055715, overlap 1055710 1055713 TGGCGGCGACGATAG CACATCGGATGGGCC GAGC GGCCCGTACGGTGTG GTTGTTTACGTCTAG TERM 706 1055713 - 1055742 + H 72 -12.1 -3.04231 | opp_overlap 1055710 1055713 1055715, overlap 1055711 1055710 GCGGCGACGATAGCA CATCGGATGGGCC GAGC GGCCCGTACGGTG TGGTTGTTTACGTCT Rpic_4713 1056033 - 1056707 + | Phosphoglycerate mutase Rpic_4714 1056771 - 1057535 + | short-chain dehydrogenase/reductase SDR TERM 707 1057719 - 1057742 + G 72 -11.6 -3.53224 | opp_overlap 1057709, overlap 1057720 AACCAGGTGCTCATT CGCGGCGCGG ACAC TCGCGCCGCC TTTGACACGCCGGTC TERM 708 1057720 - 1057741 + G 75 -15.1 -2.71791 | opp_overlap 1057709, overlap 1057719 ACCAGGTGCTCATTC GCGGCGCGG ACAC TCGCGCCGC CTTTGACACGCCGGT Rpic_4715 1057608 - 1058525 + | beta-lactamase domain protein TERM 709 1058629 - 1058595 - f 93 -16 -3.64283 | opp_overlap 1058604 GAAATGCGTGAATAA CTGTATATATTCACAG TAA CTGTGAATTTATACAG TGCTCACCATGGACG TERM 710 1058604 - 1058620 + F 73 -9.5 -3.90318 | opp_overlap 1058595 GAATAACTGTATATA TTCACAG TAA CTGTGAA TTTATACAGTGCTCA Rpic_4716 1058638 - 1058910 + | hypothetical protein Rpic_4717 1060363 - 1059131 - | major facilitator superfamily MFS_1 Rpic_4718 1060800 - 1061018 + | hypothetical protein TERM 711 1060997 - 1061027 + T 77 -8 -4.38712 | overlap 1060998 1060999 TCGGTCGGCGAGTTA TTGCGCGCCCCTCG TCC CGTAGGGCGCGCCC TTTTCTGCCGATGCC TERM 712 1060999 - 1061025 + T 76 -15 -2.53422 | overlap 1060998 1060997 GGTCGGCGAGTTATT GCGCGCCCCTCG TCC CGTAGGGCGCGC CCTTTTCTGCCGATG Rpic_4719 1062109 - 1061084 - | putative transmembrane protein Rpic_4720 1062771 - 1062106 - | protein of unknown function DUF1345 Rpic_4721 1063154 - 1062849 - | hypothetical protein TERM 713 1063257 - 1063240 - R 100 -14.1 -5.76949 | opp_overlap 1063240 CACGCGCAAAAAAAA CGCCCGC TTGT GCGGGCG TTCGTGCGGAGCGGG TERM 714 1063240 - 1063257 + r 78 -14.1 -3.14132 | opp_overlap 1063240 CACGCGCAAAAAAAA CGCCCGC TTGT GCGGGCG TTCGTGCGGAGCGGG Rpic_4722 1063702 - 1063280 - | conserved hypothetical signal peptide protein Rpic_4723 1064115 - 1064282 + | putative lipoprotein Rpic_4724 1064841 - 1064293 - | GCN5-related N-acetyltransferase TERM 715 1064586 - 1064561 - G 78 -14 -3.28791 | gap 1 ACCGTGTTTCGATAA GCCGGCCGCGC GCGGT GCG-GGCCGGC GTAGGCGTAGCCGAG Rpic_4725 1065014 - 1065991 + | Rhodanese domain protein TERM 716 1066032 - 1066015 - T 100 -12.7 -5.61881 | GCCCAAAAACAAAAA GCGCACC TCTC GGTGCGC TCTCCCGTAAGTACG Rpic_4726 1067911 - 1066334 - | flagellar hook-length control protein Rpic_4727 1068411 - 1067947 - | flagellar export protein FliJ Rpic_4728 1069959 - 1068520 - | flagellar protein export ATPase FliI Rpic_4729 1070686 - 1069949 - | flagellar assembly protein FliH Rpic_4730 1071711 - 1070719 - | flagellar motor switch protein FliG Rpic_4731 1073543 - 1071708 - | flagellar M-ring protein FliF TERM 717 1072294 - 1072333 + g 75 -6.8 -4.43189 | opp_overlap 1072293 1072292, overlap 1072320 ACGGCCACTGAAAGG CGGCGGACCGTCCCCACG GCAG CGCGGGTGCGGCGCACCG TTTTGTCGACTTCGT TERM 718 1072774 - 1072797 + g 73 -12.4 -3.40403 | overlap 1072775 CGCACGTAGTTCAGC TGCGTCGGGT CGAG GCCCGACGCG TTGTCCTGGAACGAC TERM 719 1072775 - 1072796 + g 70 -13.7 -2.64099 | overlap 1072774 GCACGTAGTTCAGCT GCGTCGGGT CGAG GCCCGACGC GTTGTCCTGGAACGA Rpic_4732 1073787 - 1074122 + | flagellar hook-basal body complex subunit FliE TERM 720 1074114 - 1074143 + F 72 -11.6 -3.34895 | gap 1 AACATCATGAGCATG TCGATCTGA-CGC CACAC GCGATCAGATCGA TTCCTTGCCCGTACC TERM 721 1075138 - 1075159 + G 79 -10.1 -4.08216 | overlap 1075115 AGCCCAAGCTGGACG CTGCCGTGT TCGG GCGCGGCAG TTTTGCCGCCGCTAA Rpic_4733 1074186 - 1075286 + | glycosyl transferase family 2 TERM 722 1075845 - 1075827 - g 72 -8.8 -4.18018 | opp_overlap 1075841 CGGCTTTACCGAAAA GCCGCC CGGCGAC GGCGGC AGCTGGATCAACGGC Rpic_4734 1075297 - 1076070 + | glucose-1-phosphate cytidylyltransferase TERM 723 1077095 - 1077074 - g 70 -5.7 -4.26076 | opp_overlap 1077082, overlap 1077077 GCATCTGCATGAAAA GACCGCGGG CGCA CGCGCGCTC TGTGACCAGCAGATC Rpic_4735 1076070 - 1077161 + | CDP-glucose 4,6-dehydratase Rpic_4736 1077158 - 1077751 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 724 1078130 - 1078120 - g 75 -6.8 -4.37092 | ACGCCGCGCACAAAA GCGA TCA TCGC CACGCACCTCTACGG TERM 725 1078635 - 1078689 + G 70 -5.9 -4.32067 | gap 5, overlap 1078669 CGAAGCGCTGGGCAT TACGCGTG-A-CGG-GCTGCTGGCCGCG TTCT CGCG-CC-GCGGCATCGATGCACGCGTG TTCTTTTATCCGCTA Rpic_4737 1077748 - 1078899 + | Glutamine--scyllo-inositol transaminase Rpic_4738 1078884 - 1079726 + | Phytanoyl-CoA dioxygenase TERM 726 1080091 - 1080078 - g 74 -5.2 -4.56597 | TCGGCTGCGCAAAAA GCGC CACCAT GCGC CTGCTGAAACAGCAG Rpic_4739 1079729 - 1080904 + | Methyltransferase type 12 Rpic_4740 1080901 - 1081416 + | GCN5-related N-acetyltransferase Rpic_4741 1081413 - 1082126 + | WbqC-like family protein Rpic_4742 1082123 - 1083397 + | glycosyl transferase family 2 TERM 727 1083495 - 1083459 - g 76 -14.4 -3.13403 | gap 1, overlap 1083457 1083494 TCTCGCTGATGAACA GC-GTGCTGGCGCCGTC CACT GTCGGCGGCAGCACAGC CAGTGGCGAAACCGG TERM 728 1083555 - 1083515 - g 93 -17.6 -3.63968 | opp_overlap 1083512, overlap 1083516 GGCGAAACCGGCAAA CCCAGCGTCGACTTCGGC TCCGT GCTGAAGTCGTCGCTGGA CCGTGTTGACGCCTC TERM 729 1083554 - 1083516 - g 90 -18.9 -2.7806 | opp_overlap 1083512, overlap 1083515 GCGAAACCGGCAAAC CCAGCGTCGACTTCGGC TCCGT GCTGAAGTCGTCGCTGG ACCGTGTTGACGCCT Rpic_4743 1083416 - 1083742 + | flagellar hook-basal body complex subunit FliE Rpic_4744 1083885 - 1084307 + | OsmC family protein Rpic_4745 1084373 - 1084816 + | transcriptional regulator, MarR family TERM 730 1085888 - 1085865 - g 90 -16 -3.57144 | CTTGCGATGTCGAAA CGGCTGCAGG ACGC CCCGCAGCCG CTCGCCTAGCGGTGA Rpic_4746 1084803 - 1085897 + | glycosyl transferase family 2 Rpic_4747 1086264 - 1085908 - | putative flagellar protein FliT Rpic_4748 1086742 - 1086320 - | flagellar protein FliS Rpic_4749 1088835 - 1086793 - | flagellar hook-associated 2 domain protein TERM 731 1088979 - 1088953 - R 100 -19.4 -5.29716 | opp_overlap 1088953 TGAACACAAGAAAAA GGCCGGCGCCCC TTT GGAACGCCGGCC CTTGCCACGCTGCCA Rpic_4750 1089843 - 1089022 - | flagellin domain protein TERM 732 1090491 - 1090445 - g 74 -13 -3.24925 | gap 2 ATTCCAGACCATCAA GACCGTGCGCCAGCAGCATGCC CGCCT GGCG-G-TGCTGGCGCTCGGCC GGCATCCTGAAGCCC Rpic_4751 1090242 - 1090877 + | two component transcriptional regulator, LuxR family Rpic_4752 1092836 - 1090878 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 733 1092298 - 1092261 - G 82 -15.4 -3.11272 | CACCAGGACCGAATA CGGCCGCGCCCCTTGC CGGGCC GCTCCGGGCGCGGCCG TCGTCGAGTGCCCGC TERM 734 1093262 - 1093295 + G 75 -3 -4.84359 | overlap 1093215 GCCAACCACACCGCG TCCGCTTCTGCGCC GGCCAA GCCGAAGGAGCCGA TTTTTGTGGCGATGG Rpic_4753 1093112 - 1093606 + | flagellar basal body-associated protein FliL TERM 735 1094212 - 1094196 - g 73 -12.3 -3.34895 | GCCACGCCCAATGAA GTGGTGG TCA CCACCAC CTTCAGCCTGGAGCT Rpic_4754 1093608 - 1094615 + | flagellar motor switch protein FliM Rpic_4755 1094605 - 1095057 + | flagellar motor switch protein FliN Rpic_4756 1095117 - 1095500 + | flagellar biosynthesis protein FliO TERM 736 1095790 - 1095753 - g 81 -12.7 -3.64703 | gap 1, opp_overlap 1095754, overlap 1095756 CGCTGGGCACGCAAA CCACGCC-GCCCAACCAG GTG CTGATCGGGCTGGCGCTG TTCCTGACGTTCTTC TERM 737 1095787 - 1095756 - g 79 -15.2 -2.94144 | gap 1, opp_overlap 1095754, overlap 1095753 TGGGCACGCAAACCA CGCC-GCCCAACCAG GTG CTGATCGGGCTGGCG CTGTTCCTGACGTTC Rpic_4757 1095497 - 1096246 + | flagellar biosynthetic protein FliP Rpic_4758 1096256 - 1096525 + | flagellar biosynthetic protein FliQ Rpic_4759 1096559 - 1097347 + | flagellar biosynthetic protein FliR TERM 738 1098384 - 1098360 - g 81 -12.1 -3.82083 | GCATGACAACGCAAA GCCAAGCGGTG CTG CACTGCCTGGC ATCACGCACATCCGG Rpic_4760 1097864 - 1098466 + | hypothetical protein Rpic_4761 1098451 - 1099257 + | phospholipid/glycerol acyltransferase TERM 739 1099288 - 1099262 - gf 74 -11.6 -3.5013 | overlap 1099263 CTCGAAATTAAGCAA CTCCTGATCGAG GCA CTCGATCTGGAA GATATGACGCCGGCG Rpic_4762 1099232 - 1099489 + | putative acyl-carrier protein Rpic_4763 1099535 - 1099780 + | phosphopantetheine-binding Rpic_4764 1099785 - 1100423 + | hypothetical protein TERM 740 1101105 - 1101127 + G 72 -11.2 -3.46602 | overlap 1101107 TGCCGCGCTTCGATG TGCTGCCGGC ACT GCCGGCGGTG TTCTCATCTGGCGGC TERM 741 1101107 - 1101125 + G 80 -13.8 -3.30651 | overlap 1101105 CCGCGCTTCGATGTG CTGCCGGC ACT GCCGGCGG TGTTCTCATCTGGCG TERM 742 1101196 - 1101156 - g 82 -15.4 -3.06796 | gap 1, opp_overlap 1101155 GCCCACTGGATGCAA CGGC-CGCTGCCGCGTTTG CGGC CACCCACGGCAGCGCGCCG ATCGAAGTCTTCGGC Rpic_4765 1100420 - 1102093 + | AMP-dependent synthetase and ligase Rpic_4766 1102090 - 1103811 + | glycosyl transferase family 2 TERM 743 1104181 - 1104212 + G 70 -11.6 -3.40403 | gap 1, overlap 1104164 1104183 1104204 CGCGCGGTTGAACTC GCTGGCGCACGGCTA CTC TGGC-GTGCGCCATC TTCTGCTGCAGCGGC TERM 744 1104183 - 1104210 + G 74 -12.8 -3.27475 | gap 1, overlap 1104164 1104181 1104204 CGCGGTTGAACTCGC TGGCGCACGGCTA CTC TGGC-GTGCGCCA TCTTCTGCTGCAGCG Rpic_4767 1103804 - 1105402 + | Histidine ammonia-lyase TERM 745 1105507 - 1105529 + G 71 -10.4 -3.65351 | opp_overlap 1105505 1105504 AATACTTCGAAATCG GCCGCGCCGC CCT GCTGCGCTGC TTTCACTACGACTAC TERM 746 1105626 - 1105607 - g 70 -11.4 -3.32647 | CCTCAAGTACATCAA GCCGGCCA CGTA TGGCCAGC AGATCGAGGTGCGCG Rpic_4768 1105389 - 1105823 + | thioesterase superfamily protein TERM 747 1105999 - 1106035 + G 84 -15.3 -3.33815 | opp_overlap 1105988, overlap 1106002 GCAATCGCTGCAGGC CATGCAGCG-GCCGCTG GTAAG CAGCGGCACGCTGC-TG TTCCTTCGCGAACAT TERM 748 1106002 - 1106033 + G 93 -18.1 -3.23853 | gap 1, opp_overlap 1105988, overlap 1105999 ATCGCTGCAGGCCAT GCAGCG-GCCGCTG GTAAG CAGCGGCACGCTGC TGTTCCTTCGCGAAC Rpic_4769 1105811 - 1106467 + | conserved hypothetical signal peptide protein Rpic_4770 1106464 - 1108872 + | putative lipoprotein transmembrane Rpic_4771 1108869 - 1110050 + | Beta-ketoacyl synthase Rpic_4772 1110053 - 1110526 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ Rpic_4773 1110523 - 1111251 + | 3-oxoacyl-(acyl-carrier-protein) reductase Rpic_4774 1111251 - 1112477 + | Beta-ketoacyl synthase Rpic_4775 1112477 - 1113775 + | Beta-ketoacyl synthase TERM 749 1113800 - 1113780 - g 74 -2.4 -4.72272 | overlap 1113781 GCTCTCGATGAAAAA CCGACTGC TACTG GCCGCCAG TACGCTCGCCATGCT Rpic_4776 1113772 - 1114206 + | conserved hypothetical signal peptide protein TERM 750 1114486 - 1114470 - g 93 -6.5 -5.1356 | overlap 1114476 CGCCACCAACAAAAA GACCAAC GGC GTCGGCC GGAGTGACGAAGCTG Rpic_4777 1114264 - 1114698 + | putative excinuclease, ATPase subunit TERM 751 1114700 - 1114754 + T 70 -9.9 -3.53012 | gap 2, opp_overlap 1114699 CGCTCAAGAAGTGAG CCGCATGGTTGCGCTGCCTGCCAGCCC GAC GGGCCGGCAGGC-GT-CAGGCAAGAGG TTTGACAGCGGCGAC Rpic_4778 1115471 - 1114743 - | Methyltransferase type 11 TERM 752 1115738 - 1115759 + G 71 -8 -4.12198 | AGGCGGGGCGCAATG TGCTGGTG CTCGAA CGCCAGCA TTTTCCACGGTTCTC Rpic_4779 1115623 - 1116882 + | monooxygenase FAD-binding Rpic_4780 1117673 - 1116930 - | protein of unknown function DUF1275 TERM 753 1117601 - 1117564 - G 80 -8.3 -4.38712 | overlap 1117565 1117593 TTGACCGCGAGAAAA CCACCCGCATTGGCGGC ACCG GCCACGAAGGCGAGCGA CTGCCCGAGGCGCCG Rpic_4781 1118695 - 1117736 - | flagellar hook-associated protein 3 Rpic_4782 1120700 - 1118763 - | flagellar hook-associated protein FlgK TERM 754 1120789 - 1120753 - R 93 -14.4 -3.90744 | opp_overlap 1120750 GGGCCCTGGAAACAA CATCGGCCGGCTCAGG ACAAA CTTGAGTCGGCCGACG CAATTAAATGTGCTC Rpic_4783 1121901 - 1120816 - | flagellar rod assembly protein/muramidase FlgJ Rpic_4784 1123036 - 1121918 - | flagellar P-ring protein TERM 755 1122325 - 1122311 - G 71 -7.8 -4.1552 | overlap 1122312 CAGCTTGGCAACAAA CCCGAC GCG GTCGGA GGCGAGCGCCGGTGC Rpic_4785 1123790 - 1123047 - | flagellar L-ring protein Rpic_4786 1124606 - 1123824 - | flagellar basal-body rod protein FlgG Rpic_4787 1125380 - 1124643 - | flagellar basal-body rod protein FlgF Rpic_4788 1126618 - 1125410 - | flagellar basal body FlaE domain protein TERM 756 1126658 - 1126644 - R 71 -5.6 -4.4261 | opp_overlap 1126645, overlap 1126645 CGTGGAAGATGAAAA GCGGGT TCG ACCCGT TATTGAATGGTGGTG Rpic_4789 1127305 - 1126658 - | flagellar hook capping protein Rpic_4790 1127750 - 1127343 - | flagellar basal-body rod protein FlgC TERM 757 1127779 - 1127791 + r 73 -9.1 -3.88232 | TCTTAAAGCTGTTTC CGGAC TGC GTCCG TTGTTGTGTGGGCGC Rpic_4791 1128363 - 1127908 - | flagellar basal-body rod protein FlgB TERM 758 1128374 - 1128413 + H 86 -13.4 -3.46285 | ACCATGTTTGCCATT CCTCGCGCGTGGCGCGTG ATTG CTTGCGCCACCCGCCGGG TTCGTGTTTCGAATA TERM 759 1128481 - 1128445 - H 75 -13.7 -2.91264 | overlap 1128470 CGTGGGACCGAGACA CCGGCATTGGCGGCCCC TTC AAAACCGCCAATGCCGT CTCCCAAACCGCTTG Rpic_4792 1128759 - 1129634 + | flagella basal body P-ring formation protein FlgA Rpic_4793 1129746 - 1130066 + | anti-sigma-28 factor, FlgM TERM 760 1130065 - 1130081 + F 72 -12.3 -3.05715 | opp_overlap 1130060 1130061, overlap 1130067 GATCCAAGAAGGTCT GACGGGA GCT TCCCGTC TTCCGTCCCCCAATT Rpic_4794 1130188 - 1130649 + | FlgN family protein Rpic_4795 1131133 - 1131798 + | two component transcriptional regulator, LuxR family TERM 761 1131854 - 1131831 - T 100 -17.4 -5.31275 | CCGCATCACAAAAAA GCGGCGCCCC TGGT GGGGCACCGC TGGAAGCACCCACCC Rpic_4796 1132969 - 1131911 - | porin Gram-negative type Rpic_4797 1133958 - 1133230 - | transcriptional regulator, GntR family TERM 762 1134025 - 1134002 - R 93 -11.7 -4.4078 | opp_overlap 1134002 1134003, overlap 1134003 GCGCGCCAATGAAAA CGGCCCACC GCATGA GGTGGGCCA TTTCCAATTGCCGTG TERM 763 1134024 - 1134003 - R 74 -13 -3.24146 | opp_overlap 1134003 1134002, overlap 1134002 CGCGCCAATGAAAAC GGCCCACC GCATGA GGTGGGCC ATTTCCAATTGCCGT Rpic_4798 1134370 - 1134080 - | histone family protein nucleoid-structuring protein H-NS Rpic_4799 1135305 - 1137959 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 764 1137981 - 1137965 - T 100 -9.4 -5.65177 | opp_overlap 1137965 ACAGGCATAAAAAAA CGGACC GTGCA GGTCCG TTTCTTGTTGGGGCG TERM 765 1137965 - 1137981 + T 84 -9.4 -4.44667 | opp_overlap 1137965 ACAGGCATAAAAAAA CGGACC GTGCA GGTCCG TTTCTTGTTGGGGCG Rpic_4800 1138208 - 1138005 - | putative osmotically inducible lipoprotein B2 transmembrane TERM 766 1138392 - 1138372 - R 74 -3.1 -4.8543 | overlap 1138373 CAACGCCGACAAAAA CCCGATGCG ATG CGGCTCGGA TACGGTTTCCCACAG Rpic_4801 1140272 - 1138686 - | isocitrate lyase and phosphorylmutase TERM 767 1139739 - 1139772 + g 72 -6.8 -4.2828 | gap 1, overlap 1139747 GTCGATATCGGCAAT GATGGGCA-CCACGT GCGTG ACGTGGTTGTCGATC TTTTCCTGGATGGCG Rpic_4802 1141377 - 1140781 - | hypothetical protein TERM 768 1141377 - 1141324 - G 75 -12.3 -3.53012 | gap 1, overlap 1141325 GCCTGTCGGGTCAAA GCGGCTGCCGCGGCCTGCGGCCAGCA AGA CGCCGACAACAGGCCGCAAC-GCCAT CACACCACCTCCGTC TERM 769 1141376 - 1141325 - G 78 -15.8 -2.71712 | gap 1, overlap 1141324 CCTGTCGGGTCAAAG CGGCTGCCGCGGCCTGCGGCCAGCA AGA CGCCGACAACAGGCCGCAAC-GCCA TCACACCACCTCCGT Rpic_4803 1141811 - 1141377 - | OsmC family protein TERM 770 1141907 - 1141874 - R 100 -18.3 -3.61398 | opp_overlap 1141878, overlap 1141878 CGGTCCGCTGAACAA GAAAGCCGGCACACA TTGC TGCATGCCGGCTTTC ATCACATCACGCGAC TERM 771 1141903 - 1141878 - R 100 -13.3 -4.44667 | opp_overlap 1141878, overlap 1141874 CCGCTGAACAAGAAA GCCGGCACACA TTGC TGCATGCCGGC TTTCATCACATCACG TERM 772 1141878 - 1141903 + r 71 -8.9 -3.74693 | opp_overlap 1141878 1141874 CCGCTGAACAAGAAA GCCGGCACACA TTGC TGCATGCCGGC TTTCATCACATCACG Rpic_4804 1144174 - 1141931 - | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 773 1143224 - 1143251 + g 71 -13.5 -3.03124 | gap 1 GTATTCCTCCATCAG CGCCGGCGTCGA CACCT TCGA-GCCGGCG TCTTCCCACGTGACC Rpic_4805 1144652 - 1144194 - | (2Fe-2S)-binding domain protein Rpic_4806 1145298 - 1147010 + | 2-isopropylmalate synthase TERM 774 1147090 - 1147057 - f 72 -11.7 -3.27704 | gap 1, opp_overlap 1147061, overlap 1147052 AGTTGCTAAATTGAA GGGATGGGTCCCAGGC GAC GCCTGGG-CTCATCCT GTCCAAAGCGCGCGA TERM 775 1147261 - 1147251 - g 72 -8.2 -3.99494 | overlap 1147252 GGAATGCAACAAGAA CGGC CAC GCCG AAGCCATGGCACGCT Rpic_4807 1147138 - 1147524 + | protein of unknown function DUF326 TERM 776 1147713 - 1147670 - g 82 -15.4 -3.06492 | gap 1, opp_overlap 1147671, overlap 1147680 CTACTCAGCCGAACA TGCCGAGCAACTGGC-CTTCA TTG CGAAGTGCCGGTCGCTCGACA TGGCACACACTGAAA Rpic_4808 1147542 - 1148024 + | transcriptional regulator, MerR family Rpic_4809 1150427 - 1148076 - | heavy metal translocating P-type ATPase TERM 777 1149335 - 1149312 - G 73 -9.4 -3.8709 | opp_overlap 1149317 AAACCGGTCGACAAA GCGCTGCGTG GGCG CGCGCTGCGC CTGCGCTTGCTGGAT TERM 778 1149317 - 1149341 + g 74 -13.5 -3.18264 | opp_overlap 1149312, overlap 1149339 GGTCGACAAAGCGCT GCGTGGGCGCG CGC TGCGCCTGCGC TTGCTGGATGGCGCC TERM 779 1150460 - 1150442 - R 89 -11 -4.18018 | TGCCTCCATTCAAAA CCCTGAAG AAG CTCCAGGG TCAAGCCTGCCTTTC Rpic_4810 1151027 - 1150479 - | protein of unknown function DUF1234 TERM 780 1150697 - 1150671 - G 72 -11.4 -3.53224 | overlap 1150658 GAGCGTGGCCGGAAA CGGCAGGCGCCG CTG CGGCACCGGGCG GAAATCGGCCAGTTC TERM 781 1151071 - 1151053 - H 71 -6.6 -4.18197 | overlap 1151054 ATCGGGCATCGAAAA CGCGACAG ATT CTGCCGCC ATTCGGCGAGCCATG TERM 782 1151856 - 1151817 - g 87 -5.6 -5.08088 | gap 1, overlap 1151819 1151834 AAGCGTGAAGAAAAA CG-CCTGGGCCTCACCAAC CAC GCTGGTGGCGCGCAAGTCG TCGCGCGCCCGCTGT Rpic_4811 1151217 - 1152515 + | citrate/H+ symporter, CitMHS family Rpic_4812 1152520 - 1153875 + | protein of unknown function DUF1446 TERM 783 1154051 - 1154089 + G 74 -13 -3.21218 | CTCGTCCGCGGCGAT GTCGAGCGCTACGTGCTG CCC CAGCTCGGCGCGCTCAAC TTCGTGCTGCACGGT Rpic_4813 1153877 - 1154197 + | hypothetical protein Rpic_4814 1154224 - 1155123 + | transcriptional regulator, LysR family TERM 784 1155527 - 1155500 - g 93 -19.2 -2.83164 | CCACCGACGACGACA TCGGCCTCGCGC TCGA GCACGAGGCCGA GCGGTGGCAGGCCGA Rpic_4815 1155214 - 1155681 + | UspA domain protein Rpic_4816 1155797 - 1156240 + | protein of unknown function DUF1486 Rpic_4817 1156295 - 1157299 + | 2-nitropropane dioxygenase NPD Rpic_4818 1157843 - 1157304 - | transcriptional regulator, PadR-like family Rpic_4819 1158689 - 1158267 - | conserved hypothetical secreted protein Rpic_4820 1160150 - 1158888 - | beta-lactamase TERM 785 1160254 - 1160292 + H 77 -3.1 -5.00616 | gap 2, overlap 1160249 AGGACAATGTGGATG GGAGGGGCGCTTGGGGC CACACCC GCCCTT-GC-TCCCTCC TTTTTTACCCGCCGC TERM 786 1160326 - 1160363 + H 82 -9.1 -4.43213 | gap 1, overlap 1160327 ATGGTACTCACAGCG GCAAGGTTG-CGCCTGCG GTG CGCGGGCGGCAATCCTGA TTTTCCTGTGTTGGC TERM 787 1160327 - 1160362 + H 74 -12.6 -3.25205 | gap 1, overlap 1160326 TGGTACTCACAGCGG CAAGGTTG-CGCCTGCG GTG CGCGGGCGGCAATCCTG ATTTTCCTGTGTTGG TERM 788 1161371 - 1161343 - g 72 -11 -3.53012 | gap 1, overlap 1161344 CCCCCCTTCCGTAAA GGCGCTCGTCGCA TTCC TGCG-CGAGCGCT TCGCGGCTGAAGCCA TERM 789 1161370 - 1161344 - g 75 -14.5 -2.71712 | gap 1, overlap 1161343 CCCCCTTCCGTAAAG GCGCTCGTCGCA TTCC TGCG-CGAGCGC TTCGCGGCTGAAGCC Rpic_4821 1160489 - 1161406 + | transcriptional regulator, LysR family TERM 790 1161618 - 1161585 - T 100 -15.9 -4.18018 | overlap 1161590 TTCTGTGATGCAAAA CGGAACGGGCACGCC GCCT GGCGTGCCCGCGCGG GAAACGACGCCCCCG TERM 791 1161613 - 1161590 - T 95 -19.6 -3.38281 | overlap 1161585 TGATGCAAAACGGAA CGGGCACGCC GCCT GGCGTGCCCG CGCGGGAAACGACGC Rpic_4822 1162710 - 1161640 - | 2-nitropropane dioxygenase NPD TERM 792 1162758 - 1162770 + H 76 -9.1 -4.07885 | ATGGTAATTCGAGGG CCCGT CCG ACGGG TTTTCGGCGCGCGTG Rpic_4823 1162860 - 1163438 + | protein of unknown function DUF1470 Rpic_4824 1163547 - 1164311 + | short-chain dehydrogenase/reductase SDR Rpic_4825 1165795 - 1164536 - | major facilitator superfamily MFS_1 TERM 793 1164663 - 1164641 - G 77 -5.4 -4.59109 | CACATGCGGCAAAAA CAGCGACGTG AGC CCCAGCGCTG CAAAGGCCCCCGTAT TERM 794 1165729 - 1165701 - G 79 -6.7 -4.57341 | gap 1, overlap 1165702 1165703 AATGCCGCTGAAAAA CT-GGCGTTGGC CGCAAC GCCCACGCCGAG GACCTTCCAACGGTG TERM 795 1165889 - 1165899 + G 76 -2.4 -4.93696 | TTCAAGACATCATGC GCAG AAT CGGC TTTTTGGTGTTTCCG Rpic_4826 1165885 - 1166847 + | transcriptional regulator, AraC family Rpic_4827 1166941 - 1167606 + | Glutathione S-transferase domain Rpic_4828 1167627 - 1168487 + | methyltransferase Rpic_4829 1168833 - 1168501 - | hypothetical protein TERM 796 1169018 - 1168997 - R 90 -5.7 -5.26875 | overlap 1168998 1169000 GGCGGAATCAAAAAA GCACGCCCC GCCT GGCGCGTGG CGGAATGCACCGCCA TERM 797 1169017 - 1168998 - R 71 -9.2 -3.75402 | overlap 1168997 1169000 GCGGAATCAAAAAAG CACGCCCC GCCT GGCGCGTG GCGGAATGCACCGCC Rpic_4830 1169378 - 1168989 - | putative transmembrane protein Rpic_4831 1169833 - 1169468 - | response regulator receiver protein Rpic_4832 1170387 - 1169854 - | hypothetical protein Rpic_4833 1171118 - 1170384 - | methyl-accepting chemotaxis sensory transducer TERM 798 1170456 - 1170423 - G 72 -10.9 -3.53224 | opp_overlap 1170446 GAGTTGTGCCTGAAA CCGGCTGGCCAGCGC CTCA ACGCTTGCCAGCGAG GCTGCGATCATCTTC Rpic_4834 1173502 - 1171118 - | putative CheA signal transduction histidine kinase TERM 799 1173863 - 1173849 - H 71 -5.6 -4.43213 | opp_overlap 1173850, overlap 1173850 CCGAATACAGCAAAA TGGCGT TTC ACGCCT TGCATCGGCACTATG Rpic_4835 1173971 - 1174366 + | Domain of unknown function DUF1801 Rpic_4836 1174453 - 1174785 + | hypothetical protein Rpic_4837 1175379 - 1174831 - | GCN5-related N-acetyltransferase Rpic_4838 1175565 - 1180481 + | NAD-glutamate dehydrogenase Rpic_4839 1180808 - 1180557 - | hypothetical protein TERM 800 1181174 - 1181148 - R 100 -20.8 -6.38039 | opp_overlap 1181166 CAGCGAAAAAAAAAA CGCCCCGGCGAG GCG CACGCCGGGGCG TTGGGCGCGCTGCCC Rpic_4840 1182183 - 1181203 - | putative transmembrane protein Rpic_4841 1183457 - 1182180 - | glycosyl transferase family 2 Rpic_4842 1185597 - 1183459 - | polysaccharide deacetylase Rpic_4843 1188113 - 1185648 - | putative hemin-binding outer membrane transmembrane protein Rpic_4844 1189100 - 1188189 - | two component transcriptional regulator, LuxR family TERM 801 1189533 - 1189576 + r 73 -4.6 -4.59511 | overlap 1189548 TGACGAAGGCGCGCG CGTGT-GACGGTGGCACGGT CGTGCT ACCG-GCCGTCGTCTGAACG TTTTTACAACCTGTT Rpic_4845 1189804 - 1189646 - | putative transmembrane protein Rpic_4846 1191025 - 1190030 - | NAD-dependent epimerase/dehydratase Rpic_4847 1192254 - 1191025 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 802 1192277 - 1192314 + H 71 -5.7 -4.29326 | opp_overlap 1192289, overlap 1192280 CTCCTGTAGACTGCG TTGATCGATAAATCGAA CGAG TTCGATATATCGAATGA TTTGTTCAATTTACA Rpic_4848 1192342 - 1192938 + | transcriptional regulator, XRE family Rpic_4849 1194296 - 1192944 - | MATE efflux family protein TERM 803 1194342 - 1194328 - H 81 -5.6 -4.77438 | opp_overlap 1194330 1194340, overlap 1194329 AGGGACGATGAAAAA GGCGGT GCA ACCGCG ACCGATTTCGCTATC Rpic_4850 1194561 - 1196291 + | amino acid permease-associated region TERM 804 1196320 - 1196344 + T 100 -15 -5.45652 | gap 1, opp_overlap 1196320 TCGCGTGACGACAAA CGCCCGACCGG CTTG CCGG-CGGGCG TTTTTTCTTGCGGGT TERM 805 1196344 - 1196320 - T 93 -15 -3.96148 | gap 1, opp_overlap 1196320 TCGCGTGACGACAAA CGCCCGACCGG CTTG CCGG-CGGGCG TTTTTTCTTGCGGGT Rpic_4851 1197457 - 1196555 - | transcriptional regulator, LysR family TERM 806 1196948 - 1196970 + g 72 -13.4 -3.14564 | opp_overlap 1196939 1196963 GAGATAGCCGGGCGC CGCCGCGGTT GCA AACCGCTGCG TTCGTGGCCCGATCG TERM 807 1197251 - 1197274 + g 76 -13.8 -3.07816 | CAGCGCCGGTCGCAG GCGGGTCAGC AGAC GCTGCCCCGC TTCGGTGGGTGAAAC Rpic_4852 1197560 - 1198444 + | aldo/keto reductase Rpic_4853 1198804 - 1198559 - | transcriptional regulator, MerR family Rpic_4854 1199099 - 1200883 + | diguanylate cyclase/phosphodiesterase Rpic_4855 1201424 - 1202842 + | coagulation factor 5/8 type domain protein TERM 808 1202915 - 1202859 - f 95 -20.2 -3.02144 | gap 1, opp_overlap 1202873, overlap 1202847 1202867 1202873 CGAGCCTCCTGAACA GGCAGACATGAC-AACGCCCCGGTGGC TTCG GCCAGCGGGGCGTTTGTCATGAAAGCC TGCGGTGAGGACTAA TERM 809 1202907 - 1202867 - f 95 -20.6 -2.9518 | gap 1, opp_overlap 1202873, overlap 1202859 1202873 CTGAACAGGCAGACA TGAC-AACGCCCCGGTGGC TTCG GCCAGCGGGGCGTTTGTCA TGAAAGCCTGCGGTG TERM 810 1202873 - 1202900 + F 100 -18.4 -3.96148 | opp_overlap 1202867 1202859 1202873 AGGCAGACATGACAA CGCCCCGGTGGC TTCG GCCAGCGGGGCG TTTGTCATGAAAGCC TERM 811 1202900 - 1202873 - f 100 -18.4 -3.50045 | opp_overlap 1202873, overlap 1202867 1202859 AGGCAGACATGACAA CGCCCCGGTGGC TTCG GCCAGCGGGGCG TTTGTCATGAAAGCC Rpic_4856 1203015 - 1204682 + | hypothetical protein Rpic_4857 1204705 - 1205718 + | 2-dehydropantoate 2-reductase Rpic_4858 1206407 - 1205715 - | transcriptional regulator, Crp/Fnr family TERM 812 1206086 - 1206102 + g 75 -13.7 -3.01924 | opp_overlap 1206073 1206072 ACTGCTCCACGCTCA CGCCGAG CAC CTCGGCG TCTTCCAGCGCGATC TERM 813 1206323 - 1206304 - G 85 -7.8 -4.68724 | TGATGGAAGAGAAAA GCGCCTGC CGCG ACAGGCAC GGGCACGGCGCATTC Rpic_4859 1207084 - 1206572 - | hypothetical protein Rpic_4860 1207113 - 1207712 + | chorismate mutase TERM 814 1207752 - 1207722 - T 100 -18.3 -5.26119 | gap 1, overlap 1207717 TCCTGAAAAAGAAAA GCGGCGCG-GCCCC CTTC GGGACGCGCGCCGC AACATGCAGGCACCG Rpic_4861 1209275 - 1207797 - | protease Do Rpic_4862 1210738 - 1209422 - | integral membrane sensor signal transduction histidine kinase Rpic_4863 1211476 - 1210742 - | two component transcriptional regulator, winged helix family Rpic_4864 1211599 - 1212441 + | transcriptional regulator, RpiR family Rpic_4865 1213519 - 1212464 - | glucokinase Rpic_4866 1214204 - 1213500 - | 6-phosphogluconolactonase Rpic_4867 1215673 - 1214204 - | glucose-6-phosphate 1-dehydrogenase TERM 815 1215191 - 1215176 - G 75 -10.4 -3.90744 | opp_overlap 1215176 GTCTTCGGCAAAGAA CTCCGC CACG GCGGAG TTGATACGCTCATTC TERM 816 1215722 - 1215735 + H 70 -3.7 -4.58685 | opp_overlap 1215733, overlap 1215733 TAGCCTAGCTGACTA GCGGG ACAA CACGC TTTTTAGGCGCATTT TERM 817 1216614 - 1216566 - g 75 -3 -4.81685 | gap 2, overlap 1216568 AGCAACGATGAAAAA GCCCGCACGCGCCAGCTCTATGCC GAG GGCA-AGCTCTCGCGCGC-CGACC TGCTGGAAGCGGAAT Rpic_4868 1215981 - 1217819 + | 6-phosphogluconate dehydratase Rpic_4869 1218291 - 1217836 - | UspA domain protein TERM 818 1218836 - 1218852 + G 75 -4.3 -4.62471 | opp_overlap 1218826, overlap 1218836 1218835 CAGAACGCTGTCGTG CTGTGCG ACG CGCAGGG TTTTTGCACCTTGCG Rpic_4870 1218425 - 1218892 + | hypothetical protein Rpic_4871 1218992 - 1219504 + | hypothetical protein TERM 819 1219556 - 1219590 + F 100 -22.9 -4.66537 | opp_overlap 1219556 AGCGCTATCAGGAGA CGGCTGCCCCCGGCA ATCCG TGCCGGCGGCAGCCG TTTTGTATTGCGGCG TERM 820 1219590 - 1219556 - f 100 -22.9 -2.82635 | opp_overlap 1219556 AGCGCTATCAGGAGA CGGCTGCCCCCGGCA ATCCG TGCCGGCGGCAGCCG TTTTGTATTGCGGCG TERM 821 1220859 - 1220839 - g 71 -12.5 -3.2614 | CATCGCTTACATCAA GGCACAGGG TGG CCCCGCGCC CGCCAGCGCGGCCAA Rpic_4872 1219733 - 1220881 + | cytochrome c oxidase subunit II TERM 822 1221268 - 1221280 + G 91 -9.1 -4.72272 | GCTGGCCGTGCTGGT GCTGG TGG CCAGC TTTTTCGTGCCGGGC Rpic_4873 1220894 - 1222654 + | cytochrome c oxidase, subunit I Rpic_4874 1222651 - 1223259 + | cytochrome c oxidase subunit III Rpic_4875 1223256 - 1223948 + | cytochrome c oxidase subunit III Rpic_4876 1223956 - 1224303 + | hypothetical protein Rpic_4877 1225560 - 1224325 - | Cystathionine gamma-synthase Rpic_4878 1225653 - 1228628 + | response regulator receiver protein TERM 823 1229050 - 1229097 + G 90 -15.6 -3.56099 | gap 1 AGCGCGGTGCTCGAT GGCATCGTCGTGGG-CGTCAGCG GGG CGCTGCCGTTCTATGACGAAGCC TTTGCCCACGTTGTG TERM 824 1229162 - 1229140 - g 71 -10.4 -3.57144 | opp_overlap 1229134 1229143, overlap 1229142 CGCGCCATCGCCAAA CAGGCCGCGG CGG CCGCTGCCGG CACCTTGCGGCTTGC TERM 825 1229160 - 1229142 - g 70 -11.6 -3.36515 | opp_overlap 1229134 1229143, overlap 1229140 CGCCATCGCCAAACA GGCCGCGG CGG CCGCTGCC GGCACCTTGCGGCTT Rpic_4879 1228642 - 1229181 + | hypothetical protein Rpic_4880 1229531 - 1230844 + | glycosyl transferase group 1 Rpic_4881 1230841 - 1231656 + | short-chain dehydrogenase/reductase SDR TERM 826 1231842 - 1231864 + G 72 -11.2 -3.53012 | opp_overlap 1231841 1231844, overlap 1231844 ATCGTTGTCAGCAAT CAGCCGGGCG TGG CGCTCGGCTA TTTCAAGGCAGAAGC TERM 827 1231844 - 1231862 + G 80 -13.8 -3.34398 | opp_overlap 1231841 1231844, overlap 1231842 CGTTGTCAGCAATCA GCCGGGCG TGG CGCTCGGC TATTTCAAGGCAGAA TERM 828 1232176 - 1232197 + G 76 -9.4 -4.07568 | overlap 1232177 CCGGGACACTGCGCG TGCCCGAC TACATC GTCGGGCG TTTTGACGAGGCCGC Rpic_4882 1231647 - 1232261 + | histidinol-phosphate phosphatase family protein Rpic_4883 1232258 - 1233469 + | glycosyl transferase family 9 TERM 829 1234346 - 1234310 - g 71 -10 -3.61398 | gap 1, overlap 1234312 CTGCGGCTGGAAGAA CACTTCGGCCCCCCGCG CCAG CGCGGCGGCCCGATG-G AGGCCCGGCACTTCG TERM 830 1234345 - 1234312 - g 80 -13.7 -3.38812 | overlap 1234310 GCGGCTGGAAGAACA CTTCGGCCCCCCGCG CCAG CGCGGCGGCCCGATG GAGGCCCGGCACTTC Rpic_4884 1233509 - 1235338 + | Carbamoyltransferase TERM 831 1235644 - 1235599 - g 81 -15.4 -2.94099 | overlap 1235601 1235622 CCGGTGCACGACACA CAGGGGCCGGCTGCC-GCACGC AACC GCG-GCTGGCAGGCGGCCACCG GCGACATCATCGCCT TERM 832 1235642 - 1235601 - g 75 -14.4 -3.02471 | overlap 1235599 1235622 GGTGCACGACACACA GGGGCCGGCTGCC-GCACGC AACC GCG-GCTGGCAGGCGGCCAC CGGCGACATCATCGC TERM 833 1236152 - 1236205 + G 100 -20.1 -2.90723 | overlap 1236197 CTGCGGTGCTGGTTG CCGTGGCGGCCGCCGCAGCCCGC ATGCCCTG GGGGGCGGCGGCCGCCGCCCTGG TGTGGTTCGCGCTCA Rpic_4885 1235335 - 1236369 + | glycosyl transferase family 2 TERM 834 1236985 - 1237040 + G 71 -9.1 -3.70068 | gap 3, overlap 1236945 CGCGCATGCCGACGC GGCGCTGGTGGCCGGAGCGT-TTTGCCG CCG TGGCGGACACGCTC-G-CCGTCAGCGGC TTTCACGTTGTCATC Rpic_4886 1236366 - 1237511 + | glycosyl transferase family 9 Rpic_4887 1237508 - 1238500 + | glycosyl transferase, group 1 TERM 835 1238533 - 1238591 + G 75 -13.7 -2.981 | overlap 1238565 CACCATCCCGGACAC CCCGAGCCGCACCACCACTGGCGCG-ACC AGC GGCGCGTGCTGGTGACGG-GCGGCGCGGG CTTTCTCGGTTCGCA Rpic_4888 1238497 - 1239519 + | NAD-dependent epimerase/dehydratase Rpic_4889 1240464 - 1239541 - | glycosyl transferase family 2 Rpic_4890 1241170 - 1240448 - | LmbE family protein TERM 836 1240940 - 1240895 - G 71 -7.7 -4.07568 | gap 3, opp_overlap 1240895, overlap 1240905 CTGGCTGTCGCAAAA CGC-CAAGTG-ATGCGC-GGTG GCACT CACCTGCGCATGCGCCTGCGCG TCTTCCACCCAGCGT Rpic_4891 1241322 - 1241167 - | hypothetical protein Rpic_4892 1242679 - 1241408 - | natural resistance-associated macrophage protein TERM 837 1241450 - 1241438 - G 87 -7.7 -4.77036 | GGCCAGCACGAAAAA CAGCA CCG TGCTG ACACACATGCACAAC TERM 838 1241655 - 1241632 - G 71 -10.3 -3.56568 | overlap 1241630 1241633 1241635 CGATAGGCAGAAACA CCATGGCCG TGGCAG CGGCCATGA CCAGCGCCAGGAACA TERM 839 1241992 - 1242007 + g 71 -7.5 -4.15044 | GTGCCAACTGCCACG GCGCC TGCCAC GGCGC TTTCTTCAGCGGCGC Rpic_4893 1242959 - 1242693 - | hypothetical protein Rpic_4894 1243486 - 1242995 - | hypothetical protein TERM 840 1243067 - 1243092 + g 76 -9.7 -4.16842 | gap 1 CACGTCGTCGAGCGT GCGTGC-GCCGA GCG TCTGCCGCACGC TTTCTTCAACGTCGC TERM 841 1243159 - 1243149 - G 72 -8.2 -4.08216 | TGATGCTGGTCAAAA CGGC CGT GCCG ATAGACCTCGCGCTT Rpic_4895 1243641 - 1244501 + | short-chain dehydrogenase/reductase SDR TERM 842 1246097 - 1246127 + G 74 -13.2 -3.2614 | opp_overlap 1246079 CGTCACCGCCATCCT GGACGGCGCGGC CGAGATT GCCGTGCCGGCC TTCGTGTCGACCCTG TERM 843 1247889 - 1247873 - g 74 -10.8 -3.75378 | opp_overlap 1247860 AGGCGCAGAACAGAA CGCGCC GCTGG GGCGCG CGGTGATCGGCGGTC Rpic_4896 1244823 - 1248029 + | acriflavin resistance protein Rpic_4897 1248022 - 1249335 + | efflux transporter, RND family, MFP subunit TERM 844 1249691 - 1249670 - g 70 -7.9 -3.95324 | opp_overlap 1249688, overlap 1249667 CACGGCCAACAACAA CGACTCGCG TACG CGCACGTCG TCGGAACGGCCGCTC Rpic_4898 1249332 - 1250786 + | RND efflux system, outer membrane lipoprotein, NodT family Rpic_4899 1251719 - 1250790 - | hypothetical protein Rpic_4900 1252171 - 1252527 + | Endoribonuclease L-PSP TERM 845 1252625 - 1252610 - g 70 -2.5 -4.59773 | gap 1, overlap 1252611 GTGCATCTGCAAAAA CG-CGG ACGCG CCGTCG CCCTGGTGGACCGCC TERM 846 1253727 - 1253758 + G 89 -18.2 -3.05384 | gap 1, opp_overlap 1253724 1253721, overlap 1253749 TTGCGGAAATGATGA CGGGCGAGACATCCA CCG TGGATGT-TCGCCCG TTCCGTGCGCAACGC Rpic_4901 1252541 - 1253791 + | FAD dependent oxidoreductase Rpic_4902 1255271 - 1253793 - | MlrC domain protein TERM 847 1254772 - 1254787 + g 80 -11.8 -3.78022 | opp_overlap 1254764 1254767 TCGAACAGCAGGCGG CCGGCG TGCT CGCCGG TTTCGTACATGTCGA Rpic_4903 1256554 - 1255292 - | amidase, hydantoinase/carbamoylase family Rpic_4904 1257264 - 1256551 - | ABC transporter related Rpic_4905 1258031 - 1257261 - | ABC transporter related Rpic_4906 1258996 - 1258028 - | inner-membrane translocator TERM 848 1258388 - 1258426 + g 78 -13.1 -3.44325 | overlap 1258391 AAACGCGAGCAGTTT GAAGGCGCGCACGTTGT AGCCG ACGGCGAGCGCGCGTTC TTCGTTGTCGCGGAT TERM 849 1258759 - 1258738 - G 77 -11.5 -3.79906 | opp_overlap 1258735 CCACGGCCAGAACAA GCGCCACCG GCAT CGGCAGCGC CAGTTGCGTGAGACC Rpic_4907 1259853 - 1258996 - | inner-membrane translocator Rpic_4908 1261114 - 1259915 - | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein Rpic_4909 1261278 - 1261183 - | hypothetical protein Rpic_4910 1261470 - 1262309 + | GntR domain protein Rpic_4911 1262757 - 1262314 - | cyanate lyase Rpic_4912 1263058 - 1264428 + | Carbohydrate-selective porin OprB Rpic_4913 1264460 - 1265467 + | D-xylose ABC transporter, periplasmic substrate-binding protein Rpic_4914 1265498 - 1267045 + | D-xylose ABC transporter, ATPase subunit TERM 850 1267611 - 1267636 + G 71 -12.5 -3.21416 | overlap 1267622 1267623 1267628 AGAGCTTCGTCCCCG CGTGGCTGGCG TGGT CGCTGGCCGCG TTCATCGTGGCCATG Rpic_4915 1267052 - 1268260 + | Monosaccharide-transporting ATPase TERM 851 1268318 - 1268363 + F 78 -7.3 -4.68593 | gap 1, opp_overlap 1268322, overlap 1268320 CTCCCTCCCCTCACA GAAAGCGATACGGCGGCGCGCG CTG CGCCGGCCGCCG-GTCGCCCCC TTTTTCCCTCATCCC TERM 852 1268359 - 1268322 - f 95 -13.3 -4.03234 | gap 1, opp_overlap 1268320 1268318 CTCCCCTCACAGAAA GCGATACGGCGGCGCGCG CTG CGCCGGCCGCCGG-TCGC CCCCTTTTTCCCTCA TERM 853 1268723 - 1268749 + G 70 -10.9 -3.37245 | gap 2, overlap 1268725 CTCAACGTCTTGGAG GCTGCCGCTACGC GTG GCGT-GCGGC-GC TTCGTGTTCGCCTCG Rpic_4916 1268396 - 1269313 + | NAD-dependent epimerase/dehydratase TERM 854 1269330 - 1269351 + T 100 -10.1 -5.14563 | opp_overlap 1269329 1269330 ACTCCAGGCAGGAAG GCCCGGC CACATCAC GCCGGGC TTTTTTACTCGCCGA Rpic_4917 1270588 - 1269371 - | hypothetical protein Rpic_4918 1272085 - 1271045 - | transcriptional regulator, LacI family TERM 855 1271532 - 1271522 - G 72 -8.2 -4.0162 | GTCGCAGACCACAAA GCCG ATG CGGC GGTGGCCCAGACCGA TERM 856 1272137 - 1272112 - R 72 -12.5 -3.01712 | gap 1, opp_overlap 1272105 1272117 GTTGGTTCTGGAACA CGGGACGGGCGC ATC GCGCGCG-CCCG CCGAGTGTCCGATTT Rpic_4919 1273081 - 1272188 - | protein of unknown function DUF6 transmembrane Rpic_4920 1273189 - 1273986 + | transcriptional regulator, AraC family Rpic_4921 1274329 - 1274823 + | hypothetical protein TERM 857 1274938 - 1274961 + G 77 -12.4 -3.6682 | gap 1, opp_overlap 1274936 CGGTCACAGCCAACC CGGCCGTCGCC TAT GGCG-TGGCCG TTTCCGTCAATGCCG Rpic_4922 1274820 - 1275308 + | hypothetical protein Rpic_4923 1275421 - 1275837 + | transcriptional regulator, MarR family Rpic_4924 1275888 - 1276280 + | 4-oxalocrotonate tautomerase TERM 858 1276331 - 1276342 + G 87 -5.8 -5.00884 | opp_overlap 1276331 1276330 GGTGTGATCATGAAC CGCA TGAG TGCG TTTTTTGCGGCCAGT Rpic_4925 1276280 - 1276459 + | hypothetical protein Rpic_4926 1277495 - 1276476 - | transcriptional regulator, AraC family TERM 859 1276717 - 1276687 - G 72 -9 -4.07568 | gap 1, overlap 1276688 GTGGCGGCGGCAAAA CGGCGCGTGAGCG TCCGCT CGCTCAT-CGCCG CCCGGACAGCCAGTT TERM 860 1277149 - 1277124 - G 71 -11.8 -3.21416 | opp_overlap 1277124 CAGGCCCACCACCAA TGCGCCCGCG TCGTAG CGCGCGCGCA GCCACGCGGCCAGGC Rpic_4927 1277581 - 1278723 + | acyl-CoA dehydrogenase domain protein Rpic_4928 1278751 - 1279956 + | acetyl-CoA acetyltransferase TERM 861 1280051 - 1280068 + G 82 -4 -5.0133 | overlap 1280050 1280049 1280066 CAGAACGTGCTCAAC GGCGAC ACCTGC GCCGCC TTTTTTGCCGCCATC TERM 862 1280328 - 1280356 + G 71 -10.2 -3.59979 | gap 1, overlap 1280327 TCGCCTGCCACTACC GCGTG-GCGGCCG ACAA CGCCCGCGCGCGC TTTGGCCTGCCGGAA Rpic_4929 1279970 - 1282096 + | 3-hydroxyacyl-CoA dehydrogenase NAD-binding Rpic_4930 1282421 - 1285084 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 863 1285667 - 1285685 + F 100 -11.7 -4.90266 | opp_overlap 1285656 1285667 1285666 AAAGCGAAGTGAAAC GCCCCGA CCTGT TCGGGGC TTTTTGATTGATGGG Rpic_4933 1285820 - 1286296 + | protein of unknown function DUF305 TERM 864 1286681 - 1286694 + G 71 -8.1 -4.07687 | CGTATGTGGGCCGCT CGCCT CACG AGGCG TTTTACACGCCGGAT Rpic_4934 1286296 - 1287771 + | 40-residue YVTN family beta-propeller repeat protein TERM 865 1287777 - 1287813 + F 100 -20.2 -3.75024 | gap 1 AGCGCGCTAGGCGAT GTGTGCCCC-TGCGGCG TGCT CGCCGCGCGGGGCGCAC TTCTTGCTGATGCAC TERM 866 1288220 - 1288208 - g 75 -7.7 -4.30576 | opp_overlap 1288182 1288219, overlap 1288210 GGCGCATTACGAAAA GATGG TCG CCATC GCGATGCGCTTTGCC Rpic_4935 1287897 - 1288493 + | heat shock protein DnaJ domain protein TERM 867 1289469 - 1289447 - g 77 -4.7 -4.59109 | GAGATGTTCGAAAAA GCGGGCATC GACAA GCTGCCAGC AAATTTCGACGAGTT Rpic_4936 1288862 - 1290253 + | extracellular solute-binding protein family 1 Rpic_4937 1290250 - 1293192 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 868 1293202 - 1293222 + T 95 -12.6 -4.18762 | opp_overlap 1293170 1293194 1293195 GCATGAAGGCTCAGA CGCCCTGA CCCGC TCAGGGCG TTTTCACTCGCGGTT Rpic_4938 1294334 - 1293429 - | transcriptional regulator, LysR family Rpic_4939 1294500 - 1296188 + | malonate decarboxylase, alpha subunit Rpic_4940 1296188 - 1297117 + | triphosphoribosyl-dephospho-CoA synthase MdcB Rpic_4941 1297104 - 1297409 + | malonate decarboxylase acyl carrier protein Rpic_4942 1297419 - 1298264 + | malonate decarboxylase, beta subunit Rpic_4943 1298261 - 1299091 + | malonate decarboxylase, gamma subunit TERM 869 1299259 - 1299280 + F 73 -5 -4.59212 | overlap 1299255 1299251 GGAAATTCAAGGAGG GGTTCGCC GCATCG GGCGCGCC TTTCTTTGCTTACTT Rpic_4944 1299462 - 1299869 + | malonate transporter, MadL subunit Rpic_4945 1299881 - 1300645 + | malonate transporter, MadM subunit TERM 870 1300979 - 1301027 + G 81 -16.8 -2.53382 | overlap 1301015 CAAAATTCGACGCGC TTGGCTGGGCGTGGGGCCCG-ACC GGC GGTGCGGGCTTCGCGCTC-GCCAG TGGCTTGCCGGTGCT Rpic_4946 1300642 - 1301277 + | phosphoribosyl-dephospho-CoA transferase Rpic_4947 1301274 - 1302209 + | malonate decarboxylase, epsilon subunit SEQUENCE gi|187927112|ref|NC_010682.1| Ralstonia pickettii 12J chromosome 1, complete sequence (length 3942557) Rpic_0001 328 - 1917 + | chromosomal replication initiator protein DnaA TERM 1 1977 - 2000 + F 100 -15.3 -4.2558 | opp_overlap 1968 1979 AATCAAGCCTCGACA GACGCCCGC TCGAAT GCGGGCGTC TTTTCATGCACAATA TERM 2 1998 - 1979 - f 70 -12.1 -2.88579 | opp_overlap 1977, overlap 1968 TCAAGCCTCGACAGA CGCCCGC TCGAAT GCGGGCG TCTTTTCATGCACAA TERM 3 2720 - 2699 - g 77 -15.9 -2.60423 | overlap 2695 ACGGCAAGCAAGTCA TGGCCGTCG CCAC CGACGGCCA CCGCCTGGCCTACTG TERM 4 2781 - 2747 - g 78 -13.5 -3.53091 | gap 1 ACTGCGGCGTGGAAA CCGGCGAGCAACCGGC AGGA GCCGGCGGC-CGCCAG GAAGTGATCATCCCG Rpic_0002 2194 - 3309 + | DNA polymerase III, beta subunit TERM 5 3331 - 3369 + F 95 -11.6 -4.56597 | opp_overlap 3332, overlap 3332 GCTGCACCCAGAGCA AGACGAGGGGCTGGATCG TGA CGATCCGCCCCTTCGCCG TTTTTAAGCAACCCC TERM 6 3368 - 3332 - f 89 -16 -3.2794 | opp_overlap 3332 3331 CTGCACCCAGAGCAA GACG-AGGGGCTGGATCG TGA CGATCC-GCCCCTTCGCC GTTTTTAAGCAACCC TERM 7 3332 - 3368 + F 86 -15.1 -3.33744 | opp_overlap 3332, overlap 3331 CTGCACCCAGAGCAA GACGAGGGGCTGGATCG TGA CGATCCGCCCCTTCGCC GTTTTTAAGCAACCC Rpic_0003 3438 - 5966 + | DNA gyrase, B subunit TERM 8 5988 - 6021 + F 86 -13.9 -3.53012 | opp_overlap 5989 5994, overlap 5989 5994 TAGCCGCGCATAGAT ACAAAACGCCGGGGG TTAC TTCCCGGCGTTTTGC TTTGCACAGCACCAA TERM 9 5989 - 6020 + F 84 -17.4 -2.71712 | opp_overlap 5989 5994, overlap 5988 5994 AGCCGCGCATAGATA CAAAACGCCGGGGG TTAC TTCCCGGCGTTTTG CTTTGCACAGCACCA TERM 10 6020 - 5989 - f 83 -16 -2.98942 | opp_overlap 5989 5988 5994, overlap 5994 AGCCGCGCATAGATA CAAAACGCCGGG GGTTACTT CCCGGCGTTTTG CTTTGCACAGCACCA TERM 11 5994 - 6015 + F 95 -11.5 -4.54727 | opp_overlap 5989 5994, overlap 5989 5988 CGCATAGATACAAAA CGCCGGGGG TTAC TTCCCGGCG TTTTGCTTTGCACAG TERM 12 6015 - 5994 - f 89 -10.1 -4.64844 | opp_overlap 5994 5989 5988, overlap 5989 CGCATAGATACAAAA CGCCGGG GGTTACTT CCCGGCG TTTTGCTTTGCACAG TERM 13 6427 - 6406 - g 79 -6.6 -4.56597 | CTGGGTCGTCAAAAA TCCTTCAC GCTATA GCGAAGGA CAGGTATGGACGCAG TERM 14 7377 - 7359 - g 80 -5.2 -4.7254 | opp_overlap 7371, overlap 7360 ATGTTCGAGCAAAAA CCAAGGGG GCG CCGCTTGA GAGATTCAAGAGATT Rpic_0004 6281 - 8413 + | N-6 DNA methylase Rpic_0005 8418 - 8852 + | hypothetical protein TERM 15 9020 - 8996 - T 93 -16.5 -3.50335 | opp_overlap 8995 9000, overlap 9000 TTGCATAAACACGAA CAAAGCCGCCC AAG GAGCGGCTTTG GTTCCTAACAACTAT TERM 16 9016 - 9000 - T 93 -11.5 -4.37337 | opp_overlap 8995 9000, overlap 8996 ATAAACACGAACAAA GCCGCCC AAG GAGCGGC TTTGGTTCCTAACAA TERM 17 9000 - 9016 + T 73 -9.3 -3.95584 | opp_overlap 9000 8996, overlap 8995 ATAAACACGAACAAA GCCGCCC AAG GAGCGGC TTTGGTTCCTAACAA Rpic_0006 9454 - 9044 - | hypothetical protein TERM 18 9758 - 9700 - H 90 -14.6 -3.57263 | opp_overlap 9708 9709 9714 9757, overlap 9702 9703 ATCGCGAGCCCCAAA CACTCGTATTCCGCTGTCGAAGCTCGAA ATT TTCGAGCTTCGACAGCGGGCTTTGAACC CCCGACGGTGGCGCG TERM 19 9756 - 9702 - H 95 -19.4 -3.36515 | opp_overlap 9708 9709 9714, overlap 9700 9703 CGCGAGCCCCAAACA CTCGTATTCCGCTGTCGAAGCTCGAA ATT TTCGAGCTTCGACAGCGGGCTTTGAA CCCCCGACGGTGGCG TERM 20 9755 - 9703 - H 95 -20.7 -2.61695 | opp_overlap 9708 9709 9714, overlap 9702 9700 GCGAGCCCCAAACAC TCGTATTCCGCTGTCGAAGCTCGAA ATT TTCGAGCTTCGACAGCGGGCTTTGA ACCCCCGACGGTGGC TERM 21 9708 - 9750 + H 100 -25.8 -3.53012 | opp_overlap 9703 9702 9700, overlap 9709 9714 CCCCAAACACTCGTA TTCCGCTGTCGAAGCTCGAA ATT TTCGAGCTTCGACAGCGGGC TTTGAACCCCCGACG TERM 22 9709 - 9749 + H 100 -29.3 -2.71712 | opp_overlap 9703 9702 9700, overlap 9708 9714 CCCAAACACTCGTAT TCCGCTGTCGAAGCTCGAA ATT TTCGAGCTTCGACAGCGGG CTTTGAACCCCCGAC TERM 23 9757 - 9800 + H 80 -10.9 -3.72576 | opp_overlap 9700, overlap 9758 9788 9794 ACAGCGGGCTTTGAA CCCCCGACGGTGGCGCG CCAGTCCGAA CGCGTCGGCGTCGGGGC TTTGATGGCCAAGCA TERM 24 9758 - 9799 + H 77 -14.4 -2.83403 | overlap 9757 9788 9794 CAGCGGGCTTTGAAC CCCCGACGGTGGCGCG CCAGTCCGAA CGCGTCGGCGTCGGGG CTTTGATGGCCAAGC TERM 25 10242 - 10278 + H 78 -4.2 -4.86731 | overlap 10243 10244 GCTCGCGCTAGCTTT ATGGCAGGCCGGGTGG GGAGA CCTTCGGGTCTGCCGG TTTTCTTTGGGGACC TERM 26 10402 - 10392 - g 72 -8.2 -4.00348 | opp_overlap 10391, overlap 10393 TGCCAAGCAACCAAA GCGG GCA CCGC CCCGCGTCTTACCCA Rpic_0007 10376 - 10744 + | hypothetical protein Rpic_0008 11763 - 10906 - | Integrase catalytic region Rpic_0009 12146 - 11817 - | transposase IS3/IS911 family protein TERM 27 11874 - 11860 - G 82 -4.2 -5.00616 | GCCTGCGCGAAAAAA GCGC TGGCAGT GCGC AGGATGTCGTTGGCG Rpic_0010 12674 - 13633 + | Fimbrial protein Rpic_0011 14021 - 13662 - | hypothetical protein TERM 28 14086 - 14065 - H 73 -13.7 -2.75074 | gap 1, overlap 14062 CGCACGGCAACAGTA GGCGGCAGGC ATT GCC-GCCGCC ATCCCCAAGTCGCGG TERM 29 15299 - 15317 + H 73 -10.2 -3.60473 | AACGGCGCAGGCCTT GATGCGCG CGG CGCGCAGC TTGATTTGCTGTCTC TERM 30 15693 - 15670 - H 71 -9.6 -3.82486 | gap 1 ACCCAACATCAACAA CCAGGGCGTGA TCA CCA-GCCCTGG CAACGTGACGGTGTC TERM 31 17079 - 17046 - H 75 -14 -2.93723 | overlap 17041 GCTTGATCAACCAGA GCG-GCACGCTTGCCG CCAA CGGCAA-CGTGCACGC GACCGTCGCGAGCCT TERM 32 18970 - 18958 - H 71 -9.1 -3.84406 | overlap 18961 GTCCGACTACAACAA CAGCG GCA CGCTG GCTGCCGGGCAAGAC TERM 33 19748 - 19729 - H 72 -11.4 -3.32647 | opp_overlap 19741 GTTTAACTACACCAA CGATGGGC GTCA GCCCACCG TGGCCTATGTGCCGG TERM 34 20713 - 20736 + H 73 -10.2 -3.57561 | GACCCGGGCAGCAGC GTGCTGGTCG AAAC CGACCCGCGC TTTACCAACTTCCGG TERM 35 23661 - 23631 - H 78 -2.4 -5.08824 | overlap 23632 23633 CGCGGATGCAAAAAA GGCGGCGGCG GACGCGGCTGG CGACGCGGCC GGGGTGGAAGCGTGG TERM 36 24469 - 24486 + H 76 -12.7 -3.39036 | opp_overlap 24466 GGCCCAACGAAAGGG GCCCCAG CGGG CTGGGGC TTCTCCGTGATGTAT TERM 37 27140 - 27115 - g 71 -9.7 -3.69354 | GCTCACAAGTTGAAA CGGCCAACGCA AGCC TGTATTGGCCG TTCAAGCTGGCTAAC Rpic_0014 25869 - 27560 + | Polypeptide-transport-associated domain protein ShlB-type TERM 38 27870 - 27834 - T 95 -5.8 -5.63517 | gap 1, opp_overlap 27859, overlap 27835 27836 TCCTCAAACAAAAAA CGCGATGGCTGCCGGAA ACAA TTCCCGCAGCCGTTG-G CACGCATGCGTTTCT Rpic_0015 28013 - 27822 - | hypothetical protein Rpic_0016 28338 - 29102 + | GntR domain protein Rpic_0017 29130 - 29957 + | extracellular solute-binding protein family 3 TERM 39 30238 - 30270 + G 82 -15.6 -3.0792 | gap 1 GCCATCGGCATTGCC GGGGGCG-TGTGCCG CGCC TGGCGCATCGCCCCC TTCAATGCGCTGTTC Rpic_0018 30115 - 30849 + | polar amino acid ABC transporter, inner membrane subunit Rpic_0019 30846 - 31499 + | polar amino acid ABC transporter, inner membrane subunit Rpic_0020 31486 - 32223 + | ABC transporter related Rpic_0021 32307 - 33263 + | protein of unknown function UPF0187 Rpic_0022 33957 - 33286 - | hypothetical protein Rpic_0023 34758 - 34060 - | transcriptional regulator, Crp/Fnr family TERM 40 34937 - 34921 - H 78 -2.1 -5.06414 | overlap 34925 34927 GTTGCCCAACAAAAA GCAACAG CGC CCGGCGC ACGGAGACACAGCAA Rpic_0024 34952 - 36586 + | AMP-dependent synthetase and ligase TERM 41 36655 - 36626 - T 100 -12.1 -4.63486 | opp_overlap 36630, overlap 36628 36630 ACCCCCGCAATAAAA CAGAGCCCCTCGC CTTC GCGAGGGGCTTTT TGCATTCCACCAAAT TERM 42 36653 - 36628 - T 93 -14.7 -3.93367 | opp_overlap 36630, overlap 36626 36630 CCCCGCAATAAAACA GAGCCCCTCGC CTTC GCGAGGGGCTT TTTGCATTCCACCAA TERM 43 36630 - 36651 + T 100 -17.3 -4.74103 | opp_overlap 36630 36628 36626 CCGCAATAAAACAGA GCCCCTCGC CTTC GCGAGGGGC TTTTTGCATTCCACC TERM 44 36651 - 36630 - T 100 -17.3 -3.55261 | opp_overlap 36630, overlap 36628 36626 CCGCAATAAAACAGA GCCCCTCGC CTTC GCGAGGGGC TTTTTGCATTCCACC Rpic_0025 38254 - 36686 - | 40-residue YVTN family beta-propeller repeat protein TERM 45 37937 - 37968 + g 78 -13.6 -3.25823 | GCCCACGGAATAGGT CGCCGGCGCTGGCG CAGG TGTGGGCGCCGGCG TTGGTGTGGGCGCAG Rpic_0026 38470 - 39015 + | GCN5-related N-acetyltransferase TERM 46 39089 - 39101 + T 73 -4.8 -4.66537 | ATCGTCGTACTGGCG CAGC TTCCC GCTG TTTTCTGTTAAGCCG Rpic_0027 39582 - 39109 - | alkylhydroperoxidase like protein, AhpD family TERM 47 39354 - 39340 - G 73 -9.2 -3.90744 | opp_overlap 39346, overlap 39341 GCGCTCGGTAAAGAA CGGCGC TTC GCGCCA GCCGGCCACGGCGTT Rpic_0028 40623 - 39715 - | RNA polymerase, sigma-24 subunit, ECF subfamily Rpic_0029 42893 - 40695 - | PAS/PAC sensor hybrid histidine kinase TERM 48 42143 - 42102 - G 78 -12.9 -3.53012 | gap 1, opp_overlap 42142 CTGGCGGCGCGCAAA GGCGAGCAGCTGCGCCGCCA GCG TGGCACCGC-GCTGCACGGC ACGCGTGGCGGCGGC TERM 49 43032 - 43011 - H 74 -7.2 -4.42386 | opp_overlap 43010 43011 43020 43022 43024 GGCGCACGCAGAAAA CGTGCCTG AGGCGG CCGGCACG CTTTGCGCTGGCTGT Rpic_0030 43133 - 43747 + | Glutathione S-transferase domain Rpic_0031 44903 - 43755 - | CBS domain containing membrane protein Rpic_0032 45136 - 45333 + | hypothetical protein Rpic_0033 45347 - 46393 + | autotransporter-associated beta strand repeat protein Rpic_0034 47237 - 46398 - | transcriptional regulator, AraC family TERM 50 46484 - 46458 - G 81 -10.9 -4.07885 | opp_overlap 46456, overlap 46475 46478 CACGTCGGGGTAAAA GCGCACGC-GCTG GAA CAGCAGCG-GCGC GTCGCGCAATTCCTC Rpic_0035 47549 - 47842 + | GYD family protein TERM 51 47895 - 47866 - T 78 -13.7 -3.14136 | opp_overlap 47873, overlap 47835 47858 47873 TTACCAAGCACGCAA CAAAAAACCGCCC CGAG AGGCGGTTTCTTG TCTGCAGCAGGGTGG TERM 52 47873 - 47888 + T 74 -7.5 -4.38927 | opp_overlap 47873 47866 47858 GCACGCAACAAAAAA CCGCC CCGAGA GGCGG TTTCTTGTCTGCAGC TERM 53 47888 - 47873 - T 100 -8.2 -5.4833 | opp_overlap 47873, overlap 47866 47858 GCACGCAACAAAAAA CCGCCC CGAG AGGCGG TTTCTTGTCTGCAGC TERM 54 47949 - 47922 - T 82 -12.6 -3.64703 | opp_overlap 47938 47945 47945, overlap 47923 GTGGCCTCAGGCAAA CGCCTTGGCCGG CTCG CCGGCCAGGCCG GCCGCTTCGCGCAGC TERM 55 47947 - 47923 - T 73 -13.6 -2.78679 | gap 1, opp_overlap 47938 47945 47945, overlap 47922 TGGCCTCAGGCAAAC GCCTTGGCCGG CTCG CCGGCC-AGGC CGGCCGCTTCGCGCA Rpic_0036 49103 - 47913 - | Methionine adenosyltransferase TERM 56 49735 - 49759 + G 70 -13.6 -2.52676 | gap 1 CTCGCTGTTCAAGCC GCCGCGCAAGG CAAG CCT-GCGCGGC TGGATTGAAACCATG Rpic_0037 49343 - 50191 + | lipid A biosynthesis acyltransferase Rpic_0038 50205 - 51098 + | lipid A biosynthesis acyltransferase TERM 57 51103 - 51136 + F 100 -19.5 -3.61922 | overlap 51091 GCATTTATTGATGCG GGGAGCCGGCCCGCG CCAA CCCCGGCCGGCTCCC TTTAGAATGGGTGTT Rpic_0039 51188 - 52066 + | Diaminopimelate epimerase Rpic_0040 52114 - 52941 + | protein of unknown function DUF344 TERM 58 53051 - 53017 - T 100 -12.2 -5.28778 | opp_overlap 53022, overlap 53022 ATGAGCCACAAAAAA CAAAACCCCGGCGAAC AAC ATCCACCGGGGTTTTT TAACGCGGCAAAAAC TERM 59 53046 - 53022 - T 100 -12.1 -5.49579 | opp_overlap 53022, overlap 53017 CCACAAAAAACAAAA CCCCGGCGAAC AAC ATCCACCGGGG TTTTTTAACGCGGCA TERM 60 53022 - 53046 + T 88 -7 -5.00616 | opp_overlap 53022 53017 CCACAAAAAACAAAA CCCCGGCGAA CAACA TCCACCGGGG TTTTTTAACGCGGCA Rpic_0041 53744 - 53067 - | orotate phosphoribosyltransferase TERM 61 53654 - 53640 - G 71 -9.2 -3.81557 | opp_overlap 53641, overlap 53638 GGCGTTAAAGAAATA GGGCGA CGT CCGCCC CGCCTTGGTCACGAA TERM 62 54007 - 53970 - g 70 -4.8 -4.42062 | gap 2, opp_overlap 54006, overlap 54005 54006 CACGCGGTAAAGAAA GGCTACAGCGGCGCGGGC CTGT ACACGCGCCAC-A-AGCC CGACGAAGTCATCGT Rpic_0042 53778 - 54563 + | exodeoxyribonuclease III Xth TERM 63 54635 - 54655 + F 91 -14 -3.81488 | AATGCAAACCTCACG CGCCGGCA TCGCT TGCCGGCG TTGTCTTTGGCCCCC TERM 64 54662 - 54672 + F 77 -3.2 -5.0133 | TTGCCGGCGTTGTCT TTGG CCC CCAG TTTTTTAGCGAGATC Rpic_0043 54691 - 55704 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 65 55717 - 55759 + T 95 -14.3 -4.07568 | gap 1, opp_overlap 55723 55724 55730, overlap 55724 55730 TGATCGCCGCCTGAG CGG-AAACGAAAAACGCGCC TTCG GGCGCGTTTTTCTTTGGCCG TTTTGACGACCCGCG TERM 66 55752 - 55723 - T 90 -15.1 -3.59979 | opp_overlap 55717 55724 55730, overlap 55724 55730 CCGCCTGAGCGGAAA CGAAAAACGCGCC TTCG GGCGCGTTTTTCT TTGGCCGTTTTGACG TERM 67 55751 - 55724 - T 86 -18.6 -2.75844 | opp_overlap 55724 55717 55730, overlap 55723 55730 CGCCTGAGCGGAAAC GAAAAACGCGCC TTCG GGCGCGTTTTTC TTTGGCCGTTTTGAC TERM 68 55724 - 55751 + T 100 -18.6 -3.66666 | opp_overlap 55723 55724 55730, overlap 55717 55730 CGCCTGAGCGGAAAC GAAAAACGCGCC TTCG GGCGCGTTTTTC TTTGGCCGTTTTGAC TERM 69 55745 - 55730 - T 100 -11.8 -4.99134 | opp_overlap 55730 55724 55717, overlap 55724 55723 AGCGGAAACGAAAAA CGCGCC TTCG GGCGCG TTTTTCTTTGGCCGT TERM 70 55730 - 55745 + T 100 -11.8 -5.27938 | opp_overlap 55724 55723 55730, overlap 55724 55717 AGCGGAAACGAAAAA CGCGCC TTCG GGCGCG TTTTTCTTTGGCCGT Rpic_0044 56685 - 55777 - | band 7 protein TERM 71 56646 - 56600 - G 74 -10.1 -3.79251 | overlap 56601 CAGTTCAGCAGGAAA GTC-CGCCCGATCACCAGCGCCG CGA CGGCGCCGAAGA-CGAGCGCGAG CAGTTTGACCGGCAG TERM 72 56645 - 56601 - G 73 -13.6 -2.87229 | overlap 56600 AGTTCAGCAGGAAAG TC-CGCCCGATCACCAGCGCCG CGA CGGCGCCGAAGA-CGAGCGCGA GCAGTTTGACCGGCA TERM 73 56734 - 56760 + r 82 -14.5 -3.14132 | gap 1 GGTGTGGCTGGCGGG GTGGG-CGCTGC TTAC GCAGCGGCCCAC TTGCTGGCGCAGGAA Rpic_0045 57794 - 56994 - | protein of unknown function DUF218 Rpic_0046 59051 - 58107 - | peptidase M48 Ste24p TERM 74 59453 - 59505 + G 74 -2.7 -4.84359 | overlap 59446 CGGCCATGGCCTTCA CGCCGCC-GCA-TGCCGCGCTCTGGGC GCT GGCTGG-GC-TGGCGGTGCTGGTGGCG TTTTTATCCGCGTCG TERM 75 60018 - 60031 + G 72 -3.1 -4.63527 | gap 1, overlap 60003 GCGGCTCGGGCTGGT GCGAGC GCT GCT-GC TTTTTGGCGTGCTGC Rpic_0047 59149 - 60438 + | major facilitator superfamily MFS_1 Rpic_0048 61636 - 60443 - | protein of unknown function DUF185 Rpic_0049 61653 - 62471 + | short-chain dehydrogenase/reductase SDR Rpic_0050 62496 - 62894 + | hypothetical protein TERM 76 63165 - 63176 + T 88 -2.2 -5.52384 | GTCTGTTCGCGGGTG TTGG CGGT CCGA TTTTTTTAATGGCGG Rpic_0051 64122 - 63193 - | Arginase/agmatinase/formiminoglutamase Rpic_0052 65373 - 64147 - | ornithine aminotransferase TERM 77 65444 - 65456 + H 70 -3.4 -4.65895 | opp_overlap 65444 GACTTGAAATCAAAT CGAA TGTTT TTCG TTTTTCGATCCAAAA Rpic_0053 65492 - 66415 + | transcriptional regulator, LysR family TERM 78 67030 - 66994 - g 74 -12.9 -3.28791 | opp_overlap 66988 ATTGCCCGCGCACAA GCGGCGGGCGCGGTG AACGCGG CACTGCAGCCGCCGC TGGTGATGGTCTCGG Rpic_0054 66502 - 67254 + | transcriptional regulator, TetR family Rpic_0055 67303 - 68277 + | secretion protein HlyD family protein Rpic_0056 68274 - 69254 + | ABC transporter related Rpic_0057 69251 - 70414 + | ABC-2 type transporter TERM 79 71458 - 71500 + G 81 -15.6 -2.95448 | gap 1, opp_overlap 71480 CGCAGACCGACGCCA CGTTGCCGCCGCTCGCGCA ACAGGC TGCGC-AGCAGCGGCACCG TCTATCGGTATTGCT TERM 80 71648 - 71689 + G 71 -7.3 -4.16284 | gap 2, opp_overlap 71658, overlap 71649 TGCTGCCGAAGCGAT GTGGCACGAAGCCAGCGCC AACGTG GGCG-TGGCTACG-GCCAA TTTGTTCCCGCGTAT TERM 81 71876 - 71838 - g 93 -5.1 -5.40072 | gap 1, overlap 71839 CTGCGCGCAAAAAAA CGCGAAGCCGA-AGCGGC CTAC GACGCTGCCGGCGCCGCC TACAAACAAGCCGTA Rpic_0058 70422 - 72161 + | RND efflux system, outer membrane lipoprotein, NodT family Rpic_0059 73409 - 72444 - | 2-dehydropantoate 2-reductase TERM 82 73378 - 73360 - G 79 -10.2 -4.17048 | overlap 73361 CGCCCGCCAAAATAA CCGCCGGT GCC ACCGGCGC CAAGCACCAGAATCC TERM 83 73377 - 73361 - G 76 -13.7 -3.09908 | overlap 73360 GCCCGCCAAAATAAC CGCCGGT GCC ACCGGCG CCAAGCACCAGAATC TERM 84 74205 - 74193 - g 70 -5.5 -4.25104 | CGGCTCGCAGGAAAA CCTGC AGC GCAAG AAGGTCAAGGAGATG Rpic_0060 73564 - 74511 + | PP-loop domain protein Rpic_0061 74849 - 76216 + | UDP-N-acetylglucosamine pyrophosphorylase Rpic_0062 76334 - 78172 + | glucosamine/fructose-6-phosphate aminotransferase, isomerizing TERM 85 78223 - 78194 - f 90 -15.1 -3.52906 | opp_overlap 78199, overlap 78199 GCAGGCGCAGAAACA GAAAAGGCCGTCC TTCG GGACGGCCTTTTT TCGTGGTGTGCGCTT TERM 86 78218 - 78199 - f 100 -15 -4.84918 | opp_overlap 78199, overlap 78194 CGCAGAAACAGAAAA GGCCGTCC TTCG GGACGGCC TTTTTTCGTGGTGTG TERM 87 78199 - 78218 + F 100 -15 -5.20216 | opp_overlap 78199 78194 CGCAGAAACAGAAAA GGCCGTCC TTCG GGACGGCC TTTTTTCGTGGTGTG Rpic_0063 78297 - 78602 + | hypothetical protein Rpic_0064 78730 - 79002 + | hypothetical protein Rpic_0065 79111 - 80031 + | Patatin TERM 88 80476 - 80502 + G 71 -12.2 -3.27525 | opp_overlap 80475 80476, overlap 80471 ATGTCGTAGACGAAC GCGTGGTCGGCG CGA TGCCCGCCACGC TTGGGTTTGCGCAGG Rpic_0066 80154 - 81167 + | zinc-binding alcohol dehydrogenase family protein Rpic_0067 82083 - 81169 - | transcriptional regulator, LysR family TERM 89 82214 - 82235 + r 74 -12.9 -3.15999 | GCTCACGCTTCGACG CGCCACCGC GTGA GCGGGGGCG TTACGTCTATGCGCC Rpic_0068 84040 - 82250 - | thiamine pyrophosphate protein TPP binding domain protein Rpic_0069 84569 - 84093 - | Hemerythrin HHE cation binding domain protein Rpic_0070 84766 - 85236 + | PRC-barrel domain protein TERM 90 85382 - 85417 + G 70 -14 -2.57132 | gap 1, opp_overlap 85360, overlap 85381 GAAGACACCTTCCCG GCCAGTGAT-CCGCCCG CCA CGGGCGGCATCACACGC GTTGTCGACAAGGAC Rpic_0071 85298 - 85486 + | hypothetical protein TERM 91 85507 - 85532 + T 100 -15.5 -5.75945 | gap 1 CGCCGGCACTGCCGC GCCCGCATCGCC TCT GGC-ATGCGGGC TTTTTTTTCGAGGCT Rpic_0072 85907 - 85554 - | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 92 85716 - 85731 + g 71 -10.4 -3.61268 | CTCCACCGACAGCGC CGGCAC CGGT GTGCCG TTTCCACCTTCGCTG Rpic_0073 86034 - 87242 + | putative transcriptional regulator, GntR family Rpic_0074 87263 - 87769 + | transcriptional regulator, AraC family Rpic_0075 87769 - 88185 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_0076 88182 - 88436 + | hypothetical protein TERM 93 88576 - 88553 - T 100 -8.8 -5.03314 | TCGAGGTCGAAAAAA TCGGGCTCAG AGGG CCGAGCGCGA GGGGTCGAGGGCCGG Rpic_0077 89940 - 88744 - | major facilitator superfamily MFS_1 TERM 94 89638 - 89620 - G 75 -10.2 -3.85698 | GGCCGTCGGCAGAAA GACGCCGG CCG CCAGCGCC AGCAGCACGCGCGCC Rpic_0078 90710 - 90003 - | Glutathione S-transferase domain Rpic_0079 91998 - 90805 - | low temperature requirement A TERM 95 91279 - 91291 + g 78 -7.7 -4.4009 | opp_overlap 91273 91275 91270, overlap 91270 GATGAACGACAGCGC CATCG CCG CGATG TTTTCTGCGGTCCAG Rpic_0080 92680 - 92033 - | Lysine exporter protein (LYSE/YGGA) TERM 96 92907 - 92944 + r 84 -5.6 -5.00884 | gap 2 TCGTAACCGGGCGGA GGCGGGGAAAACTCGCTG CGCT CAGACAG-TT-CCCCGCC TTTTTTCCGCCCGCT TERM 97 93047 - 93029 - R 100 -11.7 -4.98531 | opp_overlap 93029 GGTGCAAACGAAAAA GCGAGCC TTGGT GGCTCGC TTCGTGTTCGACGGT TERM 98 93029 - 93047 + r 72 -11.7 -3.36452 | opp_overlap 93029 GGTGCAAACGAAAAA GCGAGCC TTGGT GGCTCGC TTCGTGTTCGACGGT Rpic_0081 93321 - 93079 - | hypothetical protein TERM 99 93186 - 93207 + g 75 -2.8 -4.78981 | overlap 93182 ACAAATCCAAGGAGG GGGTCGCC ATCTCG GGCGCGCC TTTCTTTTGCTTACT Rpic_0082 94294 - 93314 - | protein of unknown function DUF6 transmembrane TERM 100 93630 - 93608 - G 84 -6.9 -4.7254 | overlap 93609 93610 ACCGGGCAGCAAAAA CGCCGGCAC GGCCA GTGCCAGTG ACAGCACTCCAGTCG TERM 101 94228 - 94180 - G 71 -13.8 -2.77523 | gap 1, overlap 94175 94182 GCGCGACGAAGATCA CACCCCACAGCGCCCCGGCCGCG ACGC CGTAGCCGATGC-CCGTGAGGTG GTCGCGCCGCGCGTC Rpic_0083 95123 - 94401 - | transcriptional regulator, AraC family TERM 102 95167 - 95177 + r 74 -3.2 -4.76041 | CCTTCATGTCACATT TTCC CCG GGGA TTTTTCGTGCGTGTA Rpic_0084 98572 - 95357 - | transcriptional activator domain TERM 103 97891 - 97862 - G 74 -13.5 -3.21099 | overlap 97867 CTGGTCCAGCAGCAA CACCACGGCGGCT ACCC AGCCGCCGCTGCG CGCATGCAGCCCGCC TERM 104 97886 - 97867 - G 75 -15 -2.78495 | overlap 97862 CCAGCAGCAACACCA CGGCGGCT ACCC AGCCGCCG CTGCGCGCATGCAGC TERM 105 98516 - 98480 - G 75 -12.3 -3.53012 | gap 1 GGGGCTGGCCGCAAA GCCGCGCCCG-ATGCG GTTCAG CACACGCGGGCGCAGC ACGATGCCGCCCGAC TERM 106 98523 - 98540 + g 80 -14.1 -3.36273 | GGGCGCAGCACGATG CCGCCCG ACTG CGGGCGG TTGATCTTGGAGAGC Rpic_0085 98936 - 100576 + | hypothetical protein TERM 107 100644 - 100602 - T 100 -14.2 -4.25104 | gap 2 GCGCCGTCATCAAAA GCGGCAACGGCCAGGGCGCC AACCG AGCGCCC-GGC-ACTGCCGC CTTCGGGGAAGTTGG TERM 108 100726 - 100697 - T 100 -9.3 -5.44119 | gap 1, overlap 100699 GCCAGCGCAAAAAAA TACCCGGCCACAGA TCG TCTGCG-CCGGGTC TCGGAACTTTCACGG TERM 109 100724 - 100699 - T 93 -11.9 -4.36089 | gap 1, overlap 100697 CAGCGCAAAAAAATA CCCGGCCACAGA TCG TCTGCG-CCGGG TCTCGGAACTTTCAC TERM 110 100782 - 100768 - T 72 -11.4 -3.27771 | overlap 100766 GTGAGAAGAGGAACA GGCGCA TCG TGCGCC GCCCGCATGACAGCG Rpic_0086 101177 - 100821 - | protein of unknown function DUF427 Rpic_0087 102464 - 101262 - | Rh family protein/ammonium transporter Rpic_0088 103749 - 102724 - | conserved hypothetical/unknown signal peptide protein TERM 111 107195 - 107181 - g 74 -2.1 -4.72497 | gap 1 CAGCGAGGAAGAAAA GCAGAG CCAA CTC-GC GCGGCTGCAGGATTT Rpic_0089 104095 - 107382 + | methylmalonyl-CoA mutase, large subunit TERM 112 107554 - 107533 - f 74 -12.3 -3.23638 | gap 1, overlap 107523 CGAAACAGGGATGAA CCACACCCGC CCG GCGGG-GTGG CGCGACGCTGGTCAT Rpic_0090 107696 - 108550 + | 3-hydroxybutyryl-CoA dehydrogenase TERM 113 108633 - 108672 + F 100 -17.2 -6.36459 | AAGTGTGCATGGAGA CGGTGTAGCGGTGCGTTG ATGA TGACGCATCGCCACACCG TTTTTTTTTCTTCCC Rpic_0091 108707 - 109564 + | phenazine biosynthesis protein PhzF family Rpic_0092 110130 - 109582 - | GCN5-related N-acetyltransferase Rpic_0095 111888 - 110413 - | protein of unknown function DUF1254 Rpic_0096 113081 - 112098 - | 2-nitropropane dioxygenase NPD Rpic_0097 113731 - 113183 - | intracellular protease, PfpI family Rpic_0098 113869 - 114795 + | alpha/beta hydrolase fold Rpic_0099 115488 - 114805 - | 2OG-Fe(II) oxygenase TERM 114 114995 - 114981 - G 73 -9.2 -3.89734 | overlap 114982 AGAAGAACGAGCAAA CGCGCG CAC CGCGCA CAACCGGTGTCACGC Rpic_0100 116249 - 115479 - | Sel1 domain protein repeat-containing protein Rpic_0101 118528 - 116249 - | TonB-dependent siderophore receptor Rpic_0102 118803 - 119582 + | Enoyl-CoA hydratase/isomerase Rpic_0103 119584 - 121356 + | protein of unknown function DUF1446 Rpic_0104 121371 - 122525 + | acyl-CoA dehydrogenase domain protein Rpic_0105 122547 - 123434 + | short-chain dehydrogenase/reductase SDR TERM 115 123583 - 123624 + G 71 -7.3 -4.19678 | gap 3, overlap 123598 CGCGGTCAACTCCTG CCGCGCGACCGGC-TTG-GC CGCCT GCTCGACGCCGG-CGCGCCG TTTCTTGAGCTATCC TERM 116 124473 - 124458 - g 72 -8.2 -4.11183 | CGTCATCACAAACAA CGGGCC GCTG GACCCG GCGGGCGCGACCAAG Rpic_0106 123421 - 125040 + | carboxyl transferase Rpic_0107 125090 - 126247 + | acyl-CoA dehydrogenase domain protein TERM 117 127521 - 127534 + G 75 -3.7 -4.59853 | TGCTGCTTGGCTTGC CGACC AACC GGGCG TTTTTGCGCGATTGC Rpic_0108 126251 - 128245 + | Carbamoyl-phosphate synthase L chain ATP-binding Rpic_0109 128330 - 129916 + | AMP-dependent synthetase and ligase Rpic_0110 130600 - 129923 - | transcriptional regulator, TetR family Rpic_0111 131615 - 130662 - | beta-lactamase domain protein TERM 118 131559 - 131535 - G 70 -2.7 -4.65895 | overlap 131537 TTCGTCATCGAAAAA CAGGATGTTGT TCG ACGACAGCCAG CCGCGCTCGAACACG Rpic_0112 131894 - 131628 - | protein of unknown function DUF1289 Rpic_0113 132403 - 131903 - | YbaK/prolyl-tRNA synthetase associated region TERM 119 132280 - 132317 + g 100 -3.3 -5.52384 | gap 1, overlap 132271 132284 132285 GCCCGGCAGCCGCTT CAGCGGAGGTCTTGCCGG TTG CCGGCAGCATCAC-GATG TTTTTTTCGTAGCCG Rpic_0114 133355 - 132426 - | pyruvate carboxyltransferase Rpic_0115 134298 - 133357 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_0116 136409 - 134385 - | Carbamoyl-phosphate synthase L chain ATP-binding TERM 120 136113 - 136130 + g 72 -8.3 -4.08692 | opp_overlap 136112, overlap 136129 GCCGACGAAGATGAT GCCGGCG TCTG CGCAGGC TTTTGCGAAAGCTTC Rpic_0117 138150 - 137071 - | biotin synthase TERM 121 137807 - 137818 + g 75 -7.2 -4.4078 | opp_overlap 137807 GCGCCCATGCAGAAG CGGC TTGC GCCG TTTTGCTTGGCGCGC Rpic_0118 138988 - 138194 - | Enoyl-CoA hydratase/isomerase Rpic_0119 139923 - 138985 - | conserved hypothetical signal peptide protein Rpic_0120 141562 - 139955 - | Propionyl-CoA carboxylase Rpic_0121 142031 - 141591 - | hypothetical protein TERM 122 141645 - 141673 + g 81 -15.4 -2.96695 | gap 1, overlap 141634 141643 141669 TTCGGCGGATTCGGC GCCGCTTGCGTCC AGGC GGACG-AAGCGGC TGGTTTCGTGCAGGC Rpic_0122 142720 - 142031 - | HAD-superfamily hydrolase, subfamily IA, variant 3 Rpic_0123 143389 - 142784 - | DSBA oxidoreductase Rpic_0124 144561 - 143431 - | acyl-CoA dehydrogenase domain protein TERM 123 144222 - 144202 - G 73 -12.5 -3.35679 | opp_overlap 144219 CTCGGTCAGGCAGAA CGCGCCGAG CAT CTCGCCGCG CGCCAGCGGCACAAG Rpic_0125 145285 - 144572 - | short-chain dehydrogenase/reductase SDR Rpic_0126 146476 - 145295 - | acetyl-CoA acetyltransferase TERM 124 145737 - 145762 + g 72 -8.2 -4.15044 | opp_overlap 145737 TCGTTGATCGACGAA GACGACGCGG CCGTCA CCGTGCCGTC TTTCTTGAACGCGGG TERM 125 145808 - 145849 + g 74 -10.2 -3.72695 | overlap 145843 CTTGTCGACCTTGAT GCGGCGCGG-GCCTTCATCG GTGT CGATGACGGTGTCGC-CCGC TTTGCTCGACACGGT TERM 126 146758 - 146812 + r 79 -9.3 -4.2602 | overlap 146760 TTACACAAATTCAAG GCGCCATCTAGGGCAGGGTACGG CCACACAAT CTGTGTGCTGTCCTAGGTGGCTC TTGTTTGTTGCTGTG TERM 127 146760 - 146810 + r 76 -10.5 -3.71448 | overlap 146758 ACACAAATTCAAGGC GCCATCTAGGGCAGGGTACGG CCACACAAT CTGTGTGCTGTCCTAGGTGGC TCTTGTTTGTTGCTG TERM 128 146983 - 146945 - R 81 -5.4 -4.7497 | gap 1 TGCAGGGAGGAAAAA GGAAGGG-AAACTGTCT GAGCGA AGCGAGTTTTCCCTTCC CCTCCCTGCGACATA Rpic_0127 147823 - 147143 - | Carbonate dehydratase TERM 129 147764 - 147749 - G 79 -3.9 -4.8667 | overlap 147750 147751 CAGATTCGAGAAAAA CGCCG GGTCTT CAGCG TTGACCCGCTCGACC Rpic_0128 149682 - 147847 - | (Isocitrate dehydrogenase (NADP(+))) kinase Rpic_0129 151019 - 149838 - | acyl-CoA dehydrogenase domain protein Rpic_0130 151694 - 151197 - | transcriptional regulator, MerR family Rpic_0131 151879 - 152958 + | beta-lactamase domain protein TERM 130 153043 - 153080 + G 90 -5.6 -5.14563 | gap 2, overlap 153045 CGTCGTCCTGCCGTT TC-CCGCGCAA-ACGCCG ACTG CGCCGTATTACGCGGTGA TTTTTTCCTCCACGC Rpic_0132 152993 - 153379 + | Antibiotic biosynthesis monooxygenase TERM 131 153404 - 153419 + T 100 -11.8 -5.76949 | opp_overlap 153404 GCGGCCAACAAGAAA CCCGCC GACC GGCGGG TTTTTTTTCGGCCTG TERM 132 153419 - 153404 - T 95 -11.8 -4.44667 | opp_overlap 153404 GCGGCCAACAAGAAA CCCGCC GACC GGCGGG TTTTTTTTCGGCCTG Rpic_0133 154290 - 153445 - | hypothetical protein Rpic_0134 155087 - 154287 - | short-chain dehydrogenase/reductase SDR TERM 133 155150 - 155131 - R 100 -12.1 -5.28176 | CCGACGCACAAAAAA CGCCCGC ACAGGG GCGGGCG TCGATGGCGGTGTCA Rpic_0135 155856 - 155200 - | DSBA oxidoreductase TERM 134 155256 - 155288 + g 78 -14.1 -3.26031 | overlap 155245 155255 155253 GCGTCTGGGCAGCGC CCACGTTGCTGCCGG CAT CTGCCGGCGACGTGG TGTATTTACCCTGCA Rpic_0136 156727 - 156017 - | Sporulation domain protein TERM 135 156703 - 156677 - G 78 -10 -3.95787 | CACCAGACCCAGAAA CGTGCCGCCCCG TTG CGAGCGGGCACG GGAAAATTGCGTATT Rpic_0137 158578 - 156788 - | arginyl-tRNA synthetase Rpic_0138 158753 - 159076 + | Domain of unknown function DUF1840 TERM 136 159128 - 159098 - T 100 -16.2 -5.40474 | gap 1, overlap 159113 AGCGGGCCAAAAAAA TGCCCGG-CCGCC AAACGG GGCGGTCCGGGCA TCCGGCCACAGCGGG Rpic_0139 159762 - 159205 - | Ferritin Dps family protein Rpic_0140 160224 - 159796 - | protein of unknown function DUF883, ElaB Rpic_0141 160542 - 160369 - | protein of unknown function DUF1328 TERM 137 160732 - 160712 - H 85 -8.9 -4.72373 | opp_overlap 160719 160723 160724, overlap 160708 160714 CCAAAAAAACACAAA CGCAACGCG CGC CGCGTCGGG CGGTTTGACGCGTTT Rpic_0142 160751 - 162208 + | multi-sensor signal transduction histidine kinase TERM 138 162236 - 162262 + T 100 -15.3 -4.72272 | opp_overlap 162236 162242, overlap 162242 AACGCATCGCCCAAA CAAAAAGCCCC ATCGC GGGGCTTTTTG TTTTTGATGCCGGCG TERM 139 162262 - 162236 - T 93 -16 -3.5594 | opp_overlap 162236 162242, overlap 162242 AACGCATCGCCCAAA CAAAAAGCCCCA TCG CGGGGCTTTTTG TTTTTGATGCCGGCG TERM 140 162256 - 162242 - T 100 -9.2 -5.27335 | opp_overlap 162236 162242, overlap 162236 TCGCCCAAACAAAAA GCCCCA TCG CGGGGC TTTTTGTTTTTGATG TERM 141 162242 - 162256 + T 100 -8.5 -5.65496 | opp_overlap 162242 162236, overlap 162236 TCGCCCAAACAAAAA GCCCC ATCGC GGGGC TTTTTGTTTTTGATG Rpic_0143 162433 - 162293 - | Entericidin EcnAB Rpic_0144 162944 - 162504 - | response regulator receiver protein Rpic_0145 163679 - 163047 - | two component transcriptional regulator, LuxR family TERM 142 163349 - 163363 + g 75 -3.4 -4.77775 | GGATGGCCTTGACCA GCTCGT CCG GCGCGC TTTCTTTTGTCAGAT TERM 143 163939 - 163917 - R 100 -19.2 -4.86731 | TGCGGCCAAAGAAAA CGGGGCGGAA GAG TTCCGCCCCG AGGGTAGCCGGAATT TERM 144 163956 - 163969 + r 84 -9.5 -4.57073 | GGGTAGCCGGAATTG CCGGG CGGC CCCGG TTTTTCCGCGCAGTG Rpic_0146 164403 - 163990 - | conserved hypothetical signal peptide protein Rpic_0147 167362 - 164645 - | methionine synthase TERM 145 166375 - 166391 + g 71 -7.9 -4.08216 | TAATGCCGTGCACGA GCGCATG TGC CAGGCGC TTTTCCACCGGCTCC TERM 146 166685 - 166667 - G 70 -5.2 -4.4078 | GCCGCGGAACGAAAA CGACACGT TCG ACACGCCG CCGCTCACCTTCGCG Rpic_0148 167733 - 167380 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_0149 168775 - 167735 - | homocysteine S-methyltransferase TERM 147 168380 - 168343 - G 75 -11.9 -3.53444 | opp_overlap 168374 TCACGTCGGGCGAAA TGCTGGCGGTCTTGGGC GTCG GCCCAAAGGCGCCGGCA ACAAAGCGCGGCTTG TERM 148 168970 - 168984 + G 76 -2.7 -4.85599 | ACGCCTTCCTGGAGC GCACG CCCGC CGCGC TTTTTGTCGACTGCC Rpic_0150 168927 - 169319 + | Rhodanese domain protein TERM 149 169362 - 169387 + T 100 -13.3 -5.5112 | gap 1, opp_overlap 169362 CGACACATGAAAAAA CGCCCGGCAGCG CCA TGCT-CCGGGCG TTTTTTGTTGATCCG TERM 150 169387 - 169362 - T 100 -12.6 -5.24989 | gap 1, opp_overlap 169362 CGACACATGAAAAAA CGCCCGGCAGC GCCAT GCT-CCGGGCG TTTTTTGTTGATCCG TERM 151 169400 - 169414 + T 76 -9.2 -4.07687 | GCGTTTTTTGTTGAT CCGTCC AGC GGGCGG TTTTGCCCGCACGGT Rpic_0151 169690 - 169433 - | hypothetical protein Rpic_0152 170849 - 170010 - | alpha/beta hydrolase fold Rpic_0153 171933 - 170851 - | putative proline-rich signal peptide protein Rpic_0154 172831 - 171953 - | transcriptional regulator, IclR family TERM 152 173676 - 173662 - g 79 -10 -4.13014 | opp_overlap 173669 CGCACATCTGCAAAA CACGCA ACG TGCGTG CGGGCAGCATCGTTG Rpic_0155 172908 - 173900 + | fumarylacetoacetate (FAA) hydrolase Rpic_0156 174817 - 173909 - | transcriptional regulator, IclR family Rpic_0157 174921 - 175925 + | Luciferase-like monooxygenase Rpic_0158 176010 - 177173 + | Extracellular ligand-binding receptor TERM 153 177731 - 177673 - g 71 -13.8 -2.71144 | gap 1, opp_overlap 177673 177674 177726 GATCGCCGCGAAGGA CGCCCGCATCGTCGACGGCCAC-ACGC GCCTGG GCGTGGCGGCGGGCGACCATGCGGCCA TTGTCTGGCCGTTGT TERM 154 177673 - 177731 + G 72 -11.5 -3.50715 | gap 1, opp_overlap 177673, overlap 177674 177726 GATCGCCGCGAAGGA CGCCCGCATCGTCGACGGCCACACGCGC CTGG GCGTG-GCGGCGGGCGACCATGCGGCCA TTGTCTGGCCGTTGT TERM 155 177674 - 177730 + G 75 -15 -2.69947 | gap 1, opp_overlap 177673, overlap 177673 177726 ATCGCCGCGAAGGAC GCCCGCATCGTCGACGGCCACACGCGC CTGG GCGTG-GCGGCGGGCGACCATGCGGCC ATTGTCTGGCCGTTG TERM 156 177726 - 177742 + G 71 -9.4 -3.81447 | opp_overlap 177673, overlap 177674 177673 CGGCGGGCGACCATG CGGCCA TTGTC TGGCCG TTGTTGTGCGGTATG Rpic_0159 177254 - 178072 + | Enoyl-CoA hydratase/isomerase Rpic_0160 178129 - 179022 + | hypothetical protein Rpic_0161 179053 - 180210 + | Patatin Rpic_0162 180906 - 180211 - | glutathione peroxidase TERM 157 181111 - 181087 - H 79 -7.9 -4.52589 | gap 1, overlap 181089 CGGTCCGATACAAAA GA-CGGCAGC CTGCGT GCTGCCGATC ACATCGCGGCGTACC TERM 158 181108 - 181089 - H 78 -10.7 -3.87627 | overlap 181087 GTCCGATACAAAAGA CGGCAGC CTGCGT GCTGCCG ATCACATCGCGGCGT TERM 159 181154 - 181136 - H 79 -12.4 -3.49475 | CGTACCGCGAGACAA CGCGCGAC TGT ATCGCGCG TGAGGGGGTCGCCGG Rpic_0163 181310 - 182164 + | hypothetical protein TERM 160 182208 - 182184 - f 85 -15.7 -3.15544 | opp_overlap 182185 TGCCATTGGCAGCAA GCGGCCCATCG ATT CGATGGGCCGT TTTGTTTTCCACCCC TERM 161 182185 - 182207 + F 100 -19.2 -5.07652 | opp_overlap 182184 GCCATTGGCAGCAAG CGGCCCATCG ATT CGATGGGCCG TTTTGTTTTCCACCC Rpic_0164 182200 - 182736 + | rfaE bifunctional protein Rpic_0165 183526 - 182741 - | Sporulation domain protein Rpic_0166 184510 - 183629 - | putative transcriptional acitvator, Baf family Rpic_0167 185388 - 184507 - | biotin/acetyl-CoA-carboxylase ligase TERM 162 185613 - 185633 + G 71 -7.5 -4.12532 | CTTGAGGTGCGCGTT GTCGATGGA CGC TCCGTCGCC TTTCTCTCTGGCGAC Rpic_0168 185574 - 186698 + | protein of unknown function DUF140 Rpic_0169 186695 - 187573 + | ABC transporter related TERM 163 187606 - 187585 - g 70 -2.1 -4.68908 | overlap 187587 TTGATGGAAAACAAA GCCCACGCA TTCC TGGCCGGGC TGTTTACGATCGGGC Rpic_0170 187573 - 188541 + | Mammalian cell entry related domain protein TERM 164 188927 - 188939 + G 72 -3.4 -4.59511 | overlap 188900 TGCCGAGCCTGCGTG TCGA GCTGG TCGA TTTTTCACAGGTATT Rpic_0171 188551 - 189216 + | putative lipoprotein Rpic_0172 189255 - 190520 + | VanZ family protein Rpic_0173 191752 - 190508 - | major facilitator superfamily MFS_1 TERM 165 191441 - 191393 - G 75 -10.2 -3.85698 | gap 2 TGCGGCTGCCAGAAA GCCGGCCAGCCCGC--CTTGCACG GTG CGCGCCAGCAGCACGCTGGCCGCC GAGTCCGCATGGACC Rpic_0174 193716 - 191749 - | IucA/IucC family protein TERM 166 192327 - 192286 - G 91 -10.1 -4.67353 | GTACGCATCGAAAAA GCGCG-CAGCCCGCTCGGC GCGCGT GCCGT-CGGCCTGGCGCGC CAGCACGGTGTCGAG TERM 167 193556 - 193537 - G 74 -10 -3.72893 | gap 1, overlap 193539 CAGCGCTTCACGAAA CAGCGCCTG CAG CAGGCGC-G ACAGCACCCGGCAGC TERM 168 193555 - 193539 - G 81 -13.7 -3.44848 | overlap 193537 GCGCTTCACGAAACA GCGCCTG CAG CAGGCGC GACAGCACCCGGCAG Rpic_0175 194325 - 196427 + | phospholipase C, phosphocholine-specific TERM 169 196444 - 196476 + T 100 -11.9 -6.36459 | opp_overlap 196445 196446, overlap 196445 196446 CGAGACCCAAGCAAA ACGGCCCGCTGGC TTGATTT GCCAGCGGGCCAC TTTTTTTTTCTTGCG TERM 170 196445 - 196475 + T 100 -15.4 -4.39435 | opp_overlap 196445 196446, overlap 196444 196446 GAGACCCAAGCAAAA CGGCCCGCTGGC TTGATTT GCCAGCGGGCCA CTTTTTTTTTCTTGC TERM 171 196475 - 196445 - T 100 -17.6 -4.44548 | opp_overlap 196444 196445 196446, overlap 196446 GAGACCCAAGCAAAA CGGCCCGCTGGC TTGATTT GCCAGCGGGCCA CTTTTTTTTTCTTGC TERM 172 196446 - 196474 + T 91 -18.9 -3.21221 | opp_overlap 196446 196445, overlap 196445 196444 AGACCCAAGCAAAAC GGCCCGCTGGC TTGATTT GCCAGCGGGCC ACTTTTTTTTTCTTG TERM 173 196474 - 196446 - T 91 -18.9 -3.26006 | opp_overlap 196445 196444 196446, overlap 196445 AGACCCAAGCAAAAC GGCCCGCTGGC TTGATTT GCCAGCGGGCC ACTTTTTTTTTCTTG Rpic_0176 196612 - 196502 - | hypothetical protein Rpic_0177 196922 - 197383 + | hypothetical protein TERM 174 197435 - 197400 - T 81 -16.3 -2.84051 | opp_overlap 197394 197405, overlap 197405 CGAGCCGTACCAAAG CAAAAGGGCCTTGGG TTCTAC CCCAAGGCCCTTTTT GTTTCTGCAGCGTTC TERM 175 197405 - 197430 + T 100 -16.2 -5.38054 | opp_overlap 197400 197405, overlap 197394 CGTACCAAAGCAAAA GGGCCTTGGG TTCTAC CCCAAGGCCC TTTTTGTTTCTGCAG TERM 176 197430 - 197405 - T 100 -16.2 -4.58773 | opp_overlap 197394 197405, overlap 197400 CGTACCAAAGCAAAA GGGCCTTGGG TTCTAC CCCAAGGCCC TTTTTGTTTCTGCAG Rpic_0178 198461 - 197460 - | lipoic acid synthetase TERM 177 197805 - 197836 + g 71 -10.2 -3.62859 | gap 2 CGCGTAATCCGCACC CGG-G-CGCGCCTG CTTGTA CAGGCGCGGCACCG TTTCGAGGTTGTGGT Rpic_0179 199193 - 198504 - | lipoate-protein ligase B TERM 178 199302 - 199271 - R 100 -16.7 -5.40072 | gap 1, opp_overlap 199267 199296 GGTCGGGCAAAAAAA TGCCGGCG-CGATG GGAGG CATCGGCGCCGGCA TCGGCTTTTGCGGCA Rpic_0180 199713 - 199354 - | hypothetical protein Rpic_0181 199864 - 200826 + | transcriptional regulator, LysR family TERM 179 200899 - 200846 - T 93 -8.1 -5.0538 | gap 1, opp_overlap 200856 200857 200863, overlap 200857 GGGCATCGGAAAAAA TCCTCTACAAAGCAGAACGCCCCGGC ATG ACCGGGGCGTTTTGCGTTCT-GCTGA GTGCTGCGGAGGTGC TERM 180 200856 - 200890 + T 100 -17.9 -3.42996 | opp_overlap 200846 200857, overlap 200857 200863 AAAAATCCTCTACAA AGCAGAACGCCCCGG CATGA CCGGGGCGTTTTGCG TTCTGCTGAGTGCTG TERM 181 200857 - 200889 + T 100 -21.4 -2.65476 | opp_overlap 200857 200846, overlap 200856 200863 AAAATCCTCTACAAA GCAGAACGCCCCGG CATGA CCGGGGCGTTTTGC GTTCTGCTGAGTGCT TERM 182 200889 - 200857 - T 100 -19.9 -3.88985 | opp_overlap 200856 200857 200863, overlap 200846 AAAATCCTCTACAAA GCAGAACGCCCCGGC ATG ACCGGGGCGTTTTGC GTTCTGCTGAGTGCT TERM 183 200863 - 200883 + T 100 -15.4 -4.33151 | opp_overlap 200857 200846, overlap 200857 200856 CTCTACAAAGCAGAA CGCCCCGG CATGA CCGGGGCG TTTTGCGTTCTGCTG Rpic_0182 201215 - 200916 - | protein of unknown function DUF493 TERM 184 200992 - 200963 - G 72 -11.3 -3.53444 | opp_overlap 200943 TCAGCGCCTGGTAAA GCGCGTCGAGCTG TTCG CGGCTCGTCGCAC GCACGATCACCGTCA Rpic_0183 202438 - 201236 - | Serine-type D-Ala-D-Ala carboxypeptidase Rpic_0184 203180 - 202533 - | putative transmembrane protein Rpic_0185 203545 - 203216 - | putative ferredoxin 2Fe-2S protein Rpic_0186 203997 - 205286 + | sodium:dicarboxylate symporter TERM 185 205343 - 205378 + F 100 -9.8 -5.0538 | gap 2, overlap 205346 205347 AAGCGCAAAGCGTAT GATTGCGGGGCCTGTC CTTCCA GAC-GGCCCCGCG-TC TTTTTTGGGATGCAC TERM 186 205346 - 205376 + F 95 -12.6 -4.15748 | gap 1, overlap 205343 205347 CGCAAAGCGTATGAT TGCGGGGCCTGTC CTTCCA GAC-GGCCCCGCG TCTTTTTTGGGATGC TERM 187 205347 - 205375 + F 76 -13.9 -3.08726 | gap 1, overlap 205346 205343 GCAAAGCGTATGATT GCGGGGCCTGTC CTTCCA GAC-GGCCCCGC GTCTTTTTTGGGATG Rpic_0187 205388 - 207406 + | integral membrane sensor signal transduction histidine kinase Rpic_0188 207432 - 208748 + | two component, sigma54 specific, transcriptional regulator, Fis family TERM 188 208767 - 208796 + T 76 -9.2 -4.11216 | GGCACGCCCACACGC GACCACGCGCGG CACAAA CCGGGCGTTGTC TTTTCGCGCTCAACC Rpic_0189 209543 - 208806 - | hypothetical protein TERM 189 209635 - 209654 + r 85 -12.1 -3.76952 | opp_overlap 209635 GCCCGAAAACAAAAA CGCCCGG CATCGA CCGGGCG TTTCGCTTGAATCGG TERM 190 209654 - 209635 - R 100 -12.8 -5.45802 | opp_overlap 209635 GCCCGAAAACAAAAA CGCCCGGC ATCG ACCGGGCG TTTCGCTTGAATCGG Rpic_0190 210243 - 209683 - | Redoxin domain protein Rpic_0191 210858 - 210346 - | Appr-1-p processing domain protein Rpic_0192 210943 - 211512 + | putative transmembrane protein Rpic_0193 211603 - 212244 + | Lysine exporter protein (LYSE/YGGA) Rpic_0194 213837 - 212305 - | Mg chelatase, subunit ChlI TERM 191 213197 - 213168 - G 76 -13.7 -3.17051 | gap 1, overlap 213166 213173 GCCCGATCATCAACA TGGAA-TGACCGCC GGC GGCGGCCACTTCCA GCGCGCGCCGCGCTT TERM 192 213191 - 213173 - G 71 -12.4 -3.20616 | overlap 213168 213166 ATCATCAACATGGAA TGACCGCC GGC GGCGGCCA CTTCCAGCGCGCGCC TERM 193 214011 - 214031 + r 77 -8.2 -4.30719 | opp_overlap 214012, overlap 214012 AACGGGCACAAAAAA ACCGGAGC ACTGG GCTCCGGC TTTGTTGTCGGCAGA TERM 194 214030 - 214012 - R 100 -11.7 -5.61596 | opp_overlap 214011 214012 ACGGGCACAAAAAAA CCGGAGC ACTGG GCTCCGG CTTTGTTGTCGGCAG Rpic_0195 214564 - 214052 - | putative transmembrane protein Rpic_0196 214999 - 214742 - | protein of unknown function DUF526 TERM 195 215750 - 215732 - g 70 -7.3 -4.0156 | opp_overlap 215732 GCAGACCAACAACAA GCCGGCC ATTCA GGGCGGC TTTGACTACGCCATT Rpic_0197 215532 - 216347 + | hypothetical protein Rpic_0198 216394 - 216732 + | nitrogen regulatory protein P-II TERM 196 216911 - 216858 - g 78 -12.9 -3.46602 | gap 1 CGCCGCACAGGACAA GCCGGCGGCTGAAGCTTCGGCGCCGG TTG CCGCGGCCGCCGCTTCCGA-GCCGGC CGCTGCCGCACCGGC Rpic_0199 216763 - 218310 + | ammonium transporter TERM 197 218353 - 218333 - f 71 -8.2 -4.09685 | opp_overlap 218335, overlap 218307 218335 CGTCATCCCGCAAAA GACCCGGC CGCGC GCCGGGTT TTTTGTGTCGCCACC TERM 198 218351 - 218335 - f 73 -10.8 -3.64716 | opp_overlap 218335, overlap 218307 218333 TCATCCCGCAAAAGA CCCGGC CGCGC GCCGGG TTTTTTGTGTCGCCA TERM 199 218335 - 218351 + F 100 -10.8 -5.36441 | opp_overlap 218307 218335 218333 TCATCCCGCAAAAGA CCCGGC CGCGC GCCGGG TTTTTTGTGTCGCCA TERM 200 218497 - 218513 + F 100 -10.8 -6.22802 | CAGGCTATTCCCCAA GCGCGG CAGCC CCGCGC TTTTTTTTTGTCCGG TERM 201 219541 - 219498 - g 70 -10.9 -3.31854 | gap 1, overlap 219496 GAAGTACAAGGAATA CGGCGT-GACCGAGACCCCC TACGT GGTGGTCAAGGCCGACGCCG GCACCTATGGCATGG Rpic_0200 218677 - 219972 + | glutamate/cysteine ligase Rpic_0201 220005 - 220976 + | glutathione synthetase Rpic_0202 221096 - 221551 + | PTS system fructose subfamily IIA component Rpic_0203 221520 - 221789 + | Phosphotransferase system, phosphocarrier protein HPr TERM 202 223195 - 223210 + G 71 -4 -4.55287 | gap 1 TGATCCTGCCAGTGT TCC-TGC GCC GCATGGA TTTTCTCTCGATCGG Rpic_0204 221835 - 223586 + | phosphoenolpyruvate-protein phosphotransferase Rpic_0205 223817 - 224092 + | BFD domain protein (2Fe-2S)-binding domain protein TERM 203 224121 - 224149 + F 100 -12.4 -4.42976 | CCTGTCGCCGCGAAT TGCCGCCCAGGC GCTGA GCCTCGGTGGCA TTTGTTGCTTTCTGG Rpic_0206 224241 - 224720 + | bacterioferritin TERM 204 224762 - 224741 - T 100 -8.7 -5.03314 | opp_overlap 224744, overlap 224744 GTCAGCCGCAAAAAA GAAGGAGGC CTCG GCCTCCTTT TTTGTCGTGCGTGTA TERM 205 224744 - 224759 + T 100 -10.4 -5.31877 | opp_overlap 224741 224744 AGCCGCAAAAAAGAA GGAGGC CTCG GCCTCC TTTTTTGTCGTGCGT TERM 206 224759 - 224744 - T 89 -10.4 -4.62085 | opp_overlap 224744, overlap 224741 AGCCGCAAAAAAGAA GGAGGC CTCG GCCTCC TTTTTTGTCGTGCGT Rpic_0207 225535 - 224786 - | UBA/THIF-type NAD/FAD binding protein TERM 207 224999 - 224966 - G 73 -12.3 -3.30441 | CACCAGCGGCGAGAA CACGCCCATCGTTGC GCAC GCCACGTCGGGCGCG GGCTCGTCGGGTGGG TERM 208 225571 - 225553 - R 100 -16 -4.8622 | opp_overlap 225550 225547 225546 TGGTGCAATGAAAAA GGCCGTGC AGT GCACGGCC TCGTAAGTTTGCCAG Rpic_0208 227221 - 225605 - | carboxyl-terminal protease TERM 209 225911 - 225923 + g 76 -2.6 -4.89477 | overlap 225898 CTCGCGCTGCTCGGG CGTC TTCTT GGCG TTTTCTTCTTCCAGG TERM 210 227291 - 227255 - R 76 -9.4 -4.13591 | gap 1, overlap 227257 GGAACAGTAGATAAA CATGGCCCGGGACG-GC TCGC GCACATCCCGGGCTACA GGCTTCGACAGTATA TERM 211 227289 - 227257 - R 77 -12 -3.65604 | gap 1, overlap 227255 AACAGTAGATAAACA TGGCCCGGGACG-GC TCGC GCACATCCCGGGCTA CAGGCTTCGACAGTA Rpic_0209 228095 - 227340 - | phosphoglycerate mutase 1 family TERM 212 227693 - 227731 + g 73 -14.4 -2.80816 | overlap 227684 GCGGGTTGCCGAAGG CGTCGTTGTCGGCGCCGG GCT CCAGCGCGGGCGGCGGCG TGTCGTAGCTGCGGC Rpic_0210 228261 - 228683 + | Rhodanese domain protein Rpic_0211 228702 - 228959 + | glutaredoxin 3 TERM 213 229006 - 228987 - f 71 -7 -4.1523 | opp_overlap 228987 228988, overlap 228988 CGCACCACACAGAAA TGCCCGGC TTAG ACCGGGCG TTGTACTTTCAGGCC Rpic_0212 229120 - 229638 + | protein-export protein SecB TERM 214 229662 - 229690 + F 100 -17.4 -5.75342 | CGCACTGCGCCAGAG GCCCGCGCCAGC CGCAC GCTTGCGCGGGC TTTTTTTTGCCCGAC TERM 215 229893 - 229918 + G 76 -2.5 -4.93898 | gap 1, overlap 229894 229897 GCGCCGTATTTGCCG GGC-ATGACGCT GCG GGCGTCGTTGCA TTTTTCTGCTGATCT Rpic_0213 229731 - 230762 + | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Rpic_0214 231262 - 230792 - | RNA methyltransferase, TrmH family, group 2 TERM 216 231363 - 231345 - R 74 -11 -3.52113 | overlap 231343 AGCTTGGCACAAACA GCGCGACA CAA TGTCGCAC AAGCACGTGATCAAG Rpic_0215 232096 - 231374 - | putative competence protein F-related protein TERM 217 232128 - 232104 - H 70 -4.1 -4.67353 | opp_overlap 232116, overlap 232116 TTATGCATGCAAAAA GCCGCTATCCA AGC CGATTTGCGGC TTCTGCGCTATCAGA TERM 218 232257 - 232285 + G 80 -5.2 -4.72272 | overlap 232237 232257 232258 GGCGCGCCTTCGATC G-CCGCGCCGCGCG TTT CGC-CGACGTGGAC TTTTTGCTGCGCGAA Rpic_0216 232205 - 233146 + | Methyltransferase type 11 Rpic_0218 233773 - 235029 + | cytochrome c oxidase, subunit II Rpic_0219 235070 - 236674 + | cytochrome c oxidase, subunit I TERM 219 236793 - 236747 - g 93 -3.7 -5.31456 | gap 2, overlap 236749 CGAATCCAGAAAAAA GCCCAACGCCCGAGCAACGCGCT GCC AAC-CGTCGCCTGGG-GTTGATC CTCGGCACGATCGCG Rpic_0220 236728 - 236859 + | hypothetical protein Rpic_0221 236909 - 237517 + | cytochrome c oxidase assembly protein CtaG/Cox11 Rpic_0222 237522 - 237734 + | putative transmembrane protein Rpic_0223 237823 - 238683 + | cytochrome c oxidase subunit III TERM 220 238742 - 238780 + T 100 -10.3 -4.85599 | gap 1, opp_overlap 238748 238749, overlap 238743 238748 GCCCACGACAGGTGA AGACAATGCCGCAGACGG GACA CCG-CTGCGGCGTTTTCG TTTTTCTGGCGTGAC TERM 221 238743 - 238779 + T 86 -13.8 -3.50877 | gap 1, opp_overlap 238748 238749, overlap 238742 238748 CCCACGACAGGTGAA GACAATGCCGCAGACGG GACA CCG-CTGCGGCGTTTTC GTTTTTCTGGCGTGA TERM 222 238748 - 238774 + T 100 -12.3 -4.82678 | gap 1, opp_overlap 238748 238749, overlap 238743 238742 GACAGGTGAAGACAA TGCCGCAGACGG GACA CCG-CTGCGGCG TTTTCGTTTTTCTGG TERM 223 238774 - 238748 - T 73 -10.1 -3.68325 | gap 1, opp_overlap 238743 238742 238748, overlap 238749 GACAGGTGAAGACAA TGCCGCAGACGG GACA CCG-CTGCGGCG TTTTCGTTTTTCTGG TERM 224 238773 - 238749 - T 73 -13.6 -2.80513 | gap 1, opp_overlap 238748 238743 238742, overlap 238748 ACAGGTGAAGACAAT GCCGCAGACGG GACA CCG-CTGCGGC GTTTTCGTTTTTCTG Rpic_0224 239018 - 238809 - | putative transmembrane protein Rpic_0225 239088 - 239858 + | putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein Rpic_0226 239911 - 240567 + | putative transmembrane protein TERM 225 241149 - 241113 - g 91 -16.5 -3.61398 | opp_overlap 241116 GCTCGGCTGCAAGAA CGACGCGCCGCGTGC GGTCGAT GCGCGCGGCGCCTCG TTGCGCATGGCGGTG TERM 226 241116 - 241146 + G 71 -13.9 -2.72344 | opp_overlap 241113 CGGCTGCAAGAACGA CGCGCCGCGTGCG GTCGA TGCGCGCGGCGCC TCGTTGCGCATGGCG Rpic_0227 240571 - 241662 + | cytochrome oxidase assembly Rpic_0228 241683 - 242624 + | protoheme IX farnesyltransferase Rpic_0229 242688 - 243299 + | electron transport protein SCO1/SenC TERM 227 243343 - 243325 - T 100 -16 -5.27335 | opp_overlap 243325 CCGCCCAAAGAAAAA GCCCGCCA ATT TGGCGGGC TTTTCATTGCAGGGC TERM 228 243325 - 243343 + T 100 -16 -4.4078 | opp_overlap 243325 CCGCCCAAAGAAAAA GCCCGCCA ATT TGGCGGGC TTTTCATTGCAGGGC Rpic_0230 244295 - 243366 - | RNA polymerase, sigma 32 subunit, RpoH TERM 229 243550 - 243574 + g 81 -13.5 -3.6608 | overlap 243531 CGATCGTCCAGCTTG GCGAGGGCGGC TTC GATGCCCTCGC TTTGCATGCGGTCGT TERM 230 244392 - 244406 + r 71 -5.7 -4.29304 | TGTCGGGTTGATAGT TCCTG TAAAT CAGGA TTTGTCTTCTAATAG TERM 231 244457 - 244447 - R 83 -4.6 -5.06414 | GCGGCGCAACAAAAA GGCG CCG CACC CAGTCATAGACCGTG Rpic_0231 247412 - 244494 - | diguanylate cyclase with PAS/PAC sensor TERM 232 246469 - 246501 + g 70 -11.1 -3.36327 | overlap 246459 246481 246482 TGCTGGCGATACGCC TGCAGCGCGCTCTCG CTG CGCAGGCGCGCCGCA TTGTCGGTGGGATGG Rpic_0232 247654 - 248058 + | OsmC family protein Rpic_0233 248072 - 248941 + | Pirin domain protein Rpic_0234 249966 - 248956 - | glycosyl transferase family 3 TERM 233 250026 - 250040 + r 83 -4.2 -5.06451 | overlap 250023 TGGGTTGCGCGCTGG CGCCAT GCC GTGGTG TTTTTTGCCCTGGTG Rpic_0235 250945 - 250142 - | nitrate ABC transporter, ATPase subunits C and D Rpic_0236 251814 - 250963 - | nitrate ABC transporter, inner membrane subunit Rpic_0237 253150 - 251870 - | putative nitrate transporter protein TERM 234 252625 - 252644 + g 73 -9.3 -3.82202 | CGGTCGGGAAGGTCT GCGCGAA CACATA TTCGCGC TTGTCTTTCGCCATG TERM 235 252726 - 252759 + g 70 -11.1 -3.41738 | gap 1, overlap 252724 252723 GACAGCGTGATCGCC TGGCCGTTGTTGTTGA GCG TCATCAGCA-CGGCCA TGTCTTTCTTGGGGC TERM 236 253181 - 253170 - R 90 -5.8 -5.27335 | overlap 253171 253172 GGCTCCAAAGAAAAA GCGT CCCG ACGC GCGACCGCCGCCCAT TERM 237 253229 - 253171 - R 100 -16.7 -3.75678 | overlap 253170 253172 GCTCCAAAGAAAAAG CGTCCCGACGCGCGACCGC-CGCCCATCC GAA AGAGGGGCGCGCTGCCGTGCATCGGGAC- GCCGTTGTCCCGTGC TERM 238 253229 - 253172 - R 100 -22.7 -2.84684 | gap 1, overlap 253170 253171 CTCCAAAGAAAAAGC GTCCCGACGCGCGACCGC-CGCCCATCC GAA AGAGGGGCGCGCTGCCGTGCATCGGGAC GCCGTTGTCCCGTGC TERM 239 253333 - 253390 + r 71 -6.7 -4.27584 | overlap 253334 CGTTCCGCGTTCCGA TCTCCACGCGCCGAGCTTTTTTCTCGG CGTT CCGAGCTCGGAGCTCGGCGTGCGAGGC TTTTAGCTTGGCGGT TERM 240 253725 - 253702 - R 79 -8.8 -4.25104 | gap 1 TGCGGCGCACCAAAA CTGGGCGG-CG GCC CGACCGCTCAG CCAGCCATCACATCG Rpic_0238 254360 - 253722 - | response regulator receiver and ANTAR domain protein TERM 241 254419 - 254401 - H 77 -11.6 -3.67597 | opp_overlap 254400 TCGCTTATGCAAGAA CCGCGCCG GGG CGGTGCGG GTGTATCCTCGCAAA Rpic_0239 254508 - 255209 + | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase TERM 242 255839 - 255875 + G 71 -10.7 -3.6003 | overlap 255840 255871 ATGGCGCAGGAGGCG TTTCAGCGGGCTGCGCC TGC GGCGCAGCCGGATGCGG TTTCCGCGTAATTTG Rpic_0240 255236 - 255886 + | maleylacetoacetate isomerase TERM 243 255934 - 255914 - T 100 -12.6 -5.07652 | opp_overlap 255914 CTGCGCAAAACAAAA CGCCCTGA TCAAG TCAGGGCG TTTCTACGTTGGAGC TERM 244 255914 - 255934 + T 91 -13.3 -3.97368 | opp_overlap 255914 CTGCGCAAAACAAAA CGCCCTGAT CAA GTCAGGGCG TTTCTACGTTGGAGC Rpic_0241 257151 - 255967 - | signal recognition particle-docking protein FtsY TERM 245 256566 - 256595 + g 95 -8 -5.00884 | gap 2 CCGCGATCATGATCA CCATCGGCTGCTCG CGGC CGAGCA-CC-ATGG TTTTTTCCAAGGGGT TERM 246 258278 - 258304 + G 70 -5.7 -4.30576 | opp_overlap 258250, overlap 258279 ATGTCAACGCCGGCT ACGACGGTCTG AACCG CGGTCCGTCGA TTTTCCTGATGGACG TERM 247 258692 - 258658 - g 71 -7.6 -4.18488 | overlap 258659 ATCGATCCCAACAAA CCGGCGCGCAAGCCCG TTC CCGGCATGCGCGATGA AGGAGGGCTGCGTTG Rpic_0242 257275 - 258708 + | peptidase M16 domain protein Rpic_0243 258708 - 260060 + | peptidase M16 domain protein TERM 248 260104 - 260085 - f 86 -12.1 -3.89346 | opp_overlap 260085 TCTTTATCCGAGAAA CCGGCGG CATTTC CCGCCGG TTTTTGTTTGCGCTC TERM 249 260085 - 260104 + F 100 -12.1 -5.28942 | opp_overlap 260085 TCTTTATCCGAGAAA CCGGCGG CATTTC CCGCCGG TTTTTGTTTGCGCTC Rpic_0244 260154 - 260810 + | methyltransferase Rpic_0245 261008 - 261511 + | pantetheine-phosphate adenylyltransferase Rpic_0246 261562 - 261825 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 250 261833 - 261862 + T 72 -13.7 -2.61582 | opp_overlap 261838, overlap 261838 CGGCGTGAGCACACA AAAAAGAGACGGC TCTG GCCGTCTCTTTTC ATTGTGCCTACCGTC TERM 251 261857 - 261838 - T 100 -13.6 -5.39721 | opp_overlap 261833 261838 TGAGCACACAAAAAA GAGACGGC TCTG GCCGTCTC TTTTCATTGTGCCTA TERM 252 261838 - 261857 + T 100 -13.6 -4.50058 | opp_overlap 261838, overlap 261833 TGAGCACACAAAAAA GAGACGGC TCTG GCCGTCTC TTTTCATTGTGCCTA Rpic_0247 262528 - 261893 - | putative proline-rich transmembrane protein TERM 253 262214 - 262244 + g 88 -17.5 -3.02144 | GCGCGCCTGTTCGGC CGCCTGCGCGGCC ATCTG GGCCTCGCGGGCG TCTTCCGCAGCCTGC Rpic_0248 263155 - 262553 - | Aminoacyl-tRNA hydrolase TERM 254 263264 - 263288 + r 100 -12.8 -5.08824 | opp_overlap 263264 TCAGGCAGAAAAAAA GCCCGGCGAG ACAGG CTCGGCGGGC TTTTTTCGCTCGCAC TERM 255 263288 - 263264 - R 100 -12.8 -5.64274 | opp_overlap 263264 TCAGGCAGAAAAAAA GCCCGGCGAG ACAGG CTCGGCGGGC TTTTTTCGCTCGCAC Rpic_0249 263951 - 263325 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 256 263992 - 263971 - R 100 -8.7 -4.98531 | opp_overlap 263980 GCTCCAAACGAAAAA GACGACTCG CGAC CAAGCCGTC TGGTGAACGGAGCGC Rpic_0250 265054 - 264104 - | ribose-phosphate pyrophosphokinase TERM 257 265055 - 265065 + r 73 -4.6 -4.66833 | overlap 265046 GCCTTCGCTGCTCAT CGGG GCA CCTG TTTTTCGACTTCAGA Rpic_0251 266131 - 265262 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Rpic_0252 266769 - 266146 - | outer membrane lipoprotein LolB Rpic_0253 268706 - 266769 - | Tetratricopeptide TPR_2 repeat protein TERM 258 267564 - 267596 + g 70 -11.1 -3.32963 | GTAGTCTCGCTTCTC CTCGGCCAACTGGGC GAG GCCCTGGTAGCCGGG TTCTGGGCTCAGGGT Rpic_0254 268808 - 269683 + | formamidopyrimidine-DNA glycosylase Rpic_0255 269969 - 271915 + | hypothetical protein TERM 259 271932 - 271961 + F 76 -12.9 -3.41602 | opp_overlap 271939 271940, overlap 271940 GCGCATCGTTCGTTA CGGAGAAGGCGCC TGCG GGCGCTTTTTTCG TTCTGGTAGGATCGC TERM 260 271940 - 271953 + F 100 -9.5 -5.33848 | opp_overlap 271940 271939, overlap 271932 TTCGTTACGGAGAAG GCGCC TGCG GGCGC TTTTTTCGTTCTGGT TERM 261 271982 - 272003 + F 71 -6.5 -4.18018 | gap 1 GTAGGATCGCCGCCA GC-GCGCACG TTC CGTCCGCCGC TTTTCCATCACACGC TERM 262 272441 - 272456 + G 73 -11.8 -3.4072 | CGGCCGCTCGACCGC CGCGGC CATC GCCGCG TTCTCATACGGCGTG Rpic_0256 272019 - 273167 + | A/G-specific adenine glycosylase Rpic_0257 273851 - 273198 - | peptidase S16 lon domain protein Rpic_0258 274847 - 273954 - | hypothetical protein TERM 263 274916 - 274898 - R 100 -13.8 -6.09888 | opp_overlap 274898 GGCCAACAAAAAAAA GGCGACCG ATG CGGCCGCC TTTTTGAAGCGAGGC TERM 264 274898 - 274916 + r 95 -11.6 -4.56597 | opp_overlap 274898 GGCCAACAAAAAAAA GGCGACCG ATG CGGCCGCC TTTTTGAAGCGAGGC Rpic_0259 275283 - 274942 - | conserved hypothetical signal peptide protein TERM 265 275340 - 275313 - R 70 -10.6 -3.51924 | gap 1, overlap 275330 TGGGTACCGACAGAA GAGCG-GGCGG AGACAAA CCGCCACGCTC GCGATGAACGCCGCC TERM 266 275369 - 275330 - R 71 -8.4 -4.03234 | gap 1, opp_overlap 275359, overlap 275313 GCGGGCGGAGACAAA CCG-CCACGCTCGCGATGA ACG CCGCCGCGTGCGTGCTCGG CGCATTCCCTCCCAC Rpic_0260 276445 - 275471 - | HPr kinase Rpic_0261 276974 - 276519 - | PTS IIA-like nitrogen-regulatory protein PtsN TERM 267 277281 - 277301 + r 95 -13.9 -4.08974 | opp_overlap 277281 CACGGCATAAAAAAA CCGCGCCAC CTC GGGGCGCGG TTTCTGTGGTGCGGT TERM 268 277301 - 277281 - R 100 -13.9 -5.626 | opp_overlap 277281 CACGGCATAAAAAAA CCGCGCCAC CTC GGGGCGCGG TTTCTGTGGTGCGGT Rpic_0262 277674 - 277321 - | sigma 54 modulation protein/ribosomal protein S30EA Rpic_0263 279236 - 277725 - | RNA polymerase, sigma 54 subunit, RpoN TERM 269 279089 - 279105 + g 76 -9.4 -4.18018 | CGAGCCACTCGTTTT CCCGCT CCAGC AGCGGG TTTTCGGTCAGGGCC TERM 270 279182 - 279156 - G 70 -11.6 -3.30124 | overlap 279157 TTCGATGGTCGACAA CTGCAGCAGTCG GAT CGATTGCTGCAA CTGCGGCGTGAGCGC Rpic_0264 280121 - 279333 - | ABC transporter related Rpic_0265 280739 - 280152 - | lipopolysaccharide transport periplasmic protein LptA Rpic_0266 281431 - 280799 - | protein of unknown function DUF1239 Rpic_0267 282032 - 281436 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family TERM 271 281821 - 281801 - G 71 -13.9 -2.70932 | opp_overlap 281813 281813 GCCGTCCGGTAATGA TGGCCGGCG TGA CGCCGGCCT GTGCCAGCAGTTTGA Rpic_0268 283032 - 282049 - | KpsF/GutQ family protein TERM 272 282819 - 282861 + g 77 -12.2 -3.57792 | gap 3, opp_overlap 282805 AGGCCGGCGTGCCGG TCGAGGCCAGTGTGGCG-GCA ATCT TGCGCGCCACG-TGGCC-CGA TTTGCCCATGCCTGA TERM 273 283110 - 283129 + H 89 -11.4 -4.25104 | CTTGCGGGGAGTGGG CGGAGCGT GCGG GCGCTCCG TTTTGCTGCGCCGCA TERM 274 284071 - 284083 + G 71 -10.5 -3.61715 | GCTGGGCTTGTCGAT GGCGC TGG GCGCC TTCTTGGCCGGCATG Rpic_0269 283343 - 285322 + | sodium/hydrogen exchanger Rpic_0270 285736 - 285332 - | hypothetical protein TERM 275 285646 - 285693 + g 87 -17.7 -2.79183 | gap 1 AGAACAGGCACTCCA GCCGCACGCTGGTCGCTACGCC GTGCA GGCGTAGCGAGC-GCGCGAGGC TGTCATACGAATGGG Rpic_0271 286355 - 285777 - | intracellular protease, PfpI family TERM 276 285853 - 285813 - G 81 -11.6 -4.18934 | CAGGACTTCAAGAAA CTGCGCCAACCAGGCCGG ATGTG CCGGCCAGGCGGGTGCCG TGACGAGCTTGCCGT Rpic_0272 286464 - 287072 + | adenine phosphoribosyltransferase Rpic_0273 287198 - 287815 + | Lysine exporter protein (LYSE/YGGA) TERM 277 287848 - 287813 - T 100 -17.8 -3.72576 | gap 1, opp_overlap 287821, overlap 287816 287817 287821 GTGGCCCTGACCAAA TAAG-CAAACGCCCGGA TCC CCCGGGCGTTTGACTTA GAGCTTGTAGCCGAT TERM 278 287844 - 287816 - T 95 -15.3 -4.00042 | opp_overlap 287821, overlap 287813 287817 287821 GCCCTGACCAAATAA GCAAACGCCCGGA TCC CCCGGGCGTTTGA CTTAGAGCTTGTAGC TERM 279 287843 - 287817 - T 90 -18.8 -2.99704 | opp_overlap 287821, overlap 287816 287813 287821 CCCTGACCAAATAAG CAAACGCCCGGA TCC CCCGGGCGTTTG ACTTAGAGCTTGTAG TERM 280 287821 - 287839 + T 85 -13.1 -3.75897 | opp_overlap 287817 287816 287813 287821 GACCAAATAAGCAAA CGCCCGG ATCCC CCGGGCG TTTGACTTAGAGCTT TERM 281 287839 - 287821 - T 100 -13.8 -4.16371 | opp_overlap 287821, overlap 287817 287816 287813 GACCAAATAAGCAAA CGCCCGGA TCC CCCGGGCG TTTGACTTAGAGCTT Rpic_0274 288331 - 287846 - | protein of unknown function DUF355 Rpic_0275 291279 - 288415 - | excinuclease ABC, A subunit Rpic_0276 291522 - 292685 + | major facilitator superfamily MFS_1 Rpic_0277 292737 - 293294 + | single-strand binding protein TERM 282 293352 - 293322 - f 73 -9.6 -3.9243 | opp_overlap 293325, overlap 293310 293325 GAACGGTGTAAACAA CGAGCCTGCAGCCC TTT GGGTTGCAGGCTTT TTTGTTGTTTACGTT TERM 283 293325 - 293349 + F 100 -17.9 -5.72254 | opp_overlap 293322 293325 CGGTGTAAACAACGA GCCTGCAGCCC TTT GGGTTGCAGGC TTTTTTGTTGTTTAC TERM 284 293349 - 293325 - f 83 -15.7 -3.02371 | opp_overlap 293325, overlap 293322 CGGTGTAAACAACGA GCCTGCAGCCC TTT GGGTTGCAGGC TTTTTTGTTGTTTAC Rpic_0278 293506 - 293931 + | hypothetical protein Rpic_0280 295113 - 295919 + | transposase IS4 family protein TERM 285 296920 - 296894 - T 100 -3.4 -5.75342 | overlap 296898 TCTCCCGAAAAAAAA GGGAGACGCGGC GAT GTCGCTGCGCCC GAAGGACGGGTGGCG Rpic_0281 297495 - 297160 - | hypothetical protein Rpic_0282 298828 - 299634 + | transposase IS4 family protein TERM 286 303432 - 303449 + G 71 -7.7 -4.07885 | gap 1 AGACATGCGGATTCT TCGC-GCC GCC GGCTGCGA TTTTGGGCAGGGATA Rpic_0283 299866 - 303531 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Rpic_0285 306174 - 304111 - | GAF modulated sigma54 specific transcriptional regulator, Fis family TERM 287 306400 - 306371 - H 74 -11.5 -3.54408 | gap 1, overlap 306356 306367 CTGGATCGAAACGAA TCAGC-CTGTTCCG TTA CGGATCAGCGCTGA ACATCCCATTGCAGT Rpic_0286 306623 - 306697 + | coenzyme PQQ biosynthesis protein A TERM 288 306775 - 306792 + F 74 -4 -4.77567 | TCAGATCGGACGCAG GCTGCG AACGGG CGCCGC TTTTCTTCTAGACCT TERM 289 307343 - 307353 + G 89 -2.4 -5.36441 | CGCGTACTGGCATTC CCGG CAG CCGA TTTTTTCTATGAGAG Rpic_0287 306893 - 308152 + | putative glucose/sorbosone dehydrogenase Rpic_0288 308139 - 308462 + | cytochrome c class I TERM 290 308463 - 308508 + F 100 -16.7 -3.85698 | opp_overlap 308454, overlap 308464 GTGAAAGCACCGTAG TCTTGCCGGCGGGCGCCAAGC TTCG GCGCGGCGTCCGCTGGCCAGG TTTCTCAAGCGGGCA TERM 291 308464 - 308507 + F 86 -18 -2.91276 | opp_overlap 308454, overlap 308463 TGAAAGCACCGTAGT CTTGCCGGCGGGCGCCAAGC TTCG GCGCGGCGTCCGCTGGCCAG GTTTCTCAAGCGGGC TERM 292 308517 - 308545 + F 76 -10.1 -3.78953 | overlap 308518 GGCCAGGTTTCTCAA GCGGGCATTGCGC GCG GCGCTTTGCCCGG TTTCGTCATGACGCT TERM 293 308518 - 308544 + F 75 -13.6 -2.87051 | overlap 308517 GCCAGGTTTCTCAAG CGGGCATTGCGC GCG GCGCTTTGCCCG GTTTCGTCATGACGC Rpic_0289 308553 - 309488 + | coenzyme PQQ biosynthesis protein B Rpic_0290 309485 - 310198 + | coenzyme PQQ biosynthesis protein C Rpic_0291 310209 - 310469 + | coenzyme PQQ synthesis D Rpic_0292 310466 - 311626 + | coenzyme PQQ biosynthesis protein E Rpic_0294 313386 - 311890 - | integral membrane sensor signal transduction histidine kinase TERM 294 311951 - 311926 - G 70 -5.4 -4.43309 | gap 1, opp_overlap 311938, overlap 311928 CAACTGGAAGCAAAA CACCGCA-CCC TTTCC GGGCTGCGGCA CCAGCCGGATTTCGC Rpic_0295 314111 - 313383 - | two component transcriptional regulator, winged helix family TERM 295 313611 - 313643 + g 74 -11.3 -3.59979 | opp_overlap 313613, overlap 313612 313615 313616 TGCGAAGAAATGAAG TAGGTCGAACTCGCG CGG CGTGAGTTCGATCGG TTTGCCGTCGACGCG TERM 296 313615 - 313639 + g 74 -15.1 -2.65354 | opp_overlap 313613, overlap 313612 313611 313616 AAGAAATGAAGTAGG TCGAACTCGCG CGG CGTGAGTTCGA TCGGTTTGCCGTCGA Rpic_0296 314244 - 314918 + | thiosulfate reductase cytochrome b subunit (membrane anchoring protein) Rpic_0297 314927 - 315718 + | oxidoreductase molybdopterin binding Rpic_0298 315839 - 316168 + | pentapeptide MXKDX repeat protein TERM 297 316935 - 316923 - g 82 -4.1 -5.00616 | CGTCGGTTGAAAAAA TGCTG CTC CAACA TTTCGCTCCAAGGCA TERM 298 317047 - 317072 + G 70 -2.5 -4.59853 | opp_overlap 317048, overlap 317048 GCAGCAGAATCGACA ACCCCTGAATT TGCC AGTTGAGGGGC TTTTTCCACCGTTGA Rpic_0299 316214 - 317614 + | cytochrome c biogenesis protein transmembrane region TERM 299 317914 - 317926 + T 70 -3.4 -4.67755 | GATTCCACAGTGGGT GGTT CCGCT AACC TTTTTGAATCCGTCT TERM 300 317983 - 317958 - T 100 -12.6 -5.25699 | gap 1, opp_overlap 317958 ACCACATAACAAAAA CCCGGCAGTCC GCCAA GGAC-GCCGGG TTTTTGTTGCCTGCA TERM 301 317958 - 317983 + T 100 -12.6 -5.10461 | gap 1, opp_overlap 317958 ACCACATAACAAAAA CCCGGCAGTCC GCCAA GGAC-GCCGGG TTTTTGTTGCCTGCA Rpic_0300 318280 - 318020 - | putative signal peptide protein Rpic_0301 318766 - 318305 - | hypothetical protein Rpic_0302 319566 - 318763 - | hypothetical protein Rpic_0303 320780 - 319563 - | Beta-ketoacyl synthase Rpic_0304 321718 - 320855 - | polysaccharide deacetylase Rpic_0305 324147 - 321715 - | MMPL domain protein Rpic_0306 324757 - 324161 - | hypothetical protein Rpic_0307 325716 - 324754 - | hypothetical protein Rpic_0308 327410 - 325713 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ Rpic_0309 328111 - 327437 - | putative transmembrane protein TERM 302 327729 - 327717 - G 71 -10.5 -3.61517 | overlap 327697 ACTTGCCGCGAATAA CGCGC AAT GCGCG GTGTGAGCGTGCCGT TERM 303 327885 - 327864 - G 71 -7.9 -4.18197 | gap 1, overlap 327865 AGGCCCCAGTCAAAA TGCGCG-GCC AGC GGCGCGCGCG CCATCCACAGCACTG TERM 304 328329 - 328364 + H 73 -9.8 -3.59262 | gap 1, opp_overlap 328338, overlap 328330 328338 ATCGTTTGCGTCACT TCGTGA-AAGCGCCGCG ATA TGCGGTGTTTGTCACGG TTTCGCGCTATACGG TERM 305 328570 - 328541 - g 75 -4.1 -4.60889 | overlap 328543 AACGACCTGGAAAAA GAGCTCGCCGCAC TCAT GATCGGCGAACTG AATCTCGAAGACATT Rpic_0310 328523 - 328783 + | acyl carrier protein Rpic_0311 328838 - 329608 + | glycosyl transferase family 2 Rpic_0313 330595 - 330182 - | protein of unknown function DUF395 YeeE/YedE Rpic_0314 331031 - 330597 - | protein of unknown function DUF395 YeeE/YedE TERM 306 331130 - 331108 - H 72 -11.9 -3.37344 | overlap 331104 TGCCGAGGCAAGGAA GCGCCAGGC GCGGT GCCGGGCGC GATAGAGGCGAGGCC Rpic_0315 331364 - 332335 + | Alpha/beta hydrolase fold-3 domain protein Rpic_0316 332393 - 333187 + | putative signal peptide protein Rpic_0317 333716 - 333207 - | carbohydrate kinase, thermoresistant glucokinase family TERM 307 334570 - 334532 - g 79 -6.8 -4.56597 | gap 2 TTGCGCGTGGAAAAA GCGTACCCGTTGATGCGC TGGAT GC-CATC-ACGGCCACGC TGTCGCCCGACGACG Rpic_0318 333949 - 335664 + | AMP-dependent synthetase and ligase Rpic_0319 336366 - 337640 + | putative glycin-rich signal peptide protein Rpic_0320 337765 - 338199 + | conserved hypothetical signal peptide protein Rpic_0321 338216 - 338899 + | peptidase C39 bacteriocin processing Rpic_0322 338945 - 339481 + | putative lipoprotein Rpic_0323 340793 - 339483 - | hypothetical protein TERM 308 339869 - 339854 - G 79 -6 -4.63218 | overlap 339856 TGCTGCCGAAGAAAA CCGCCG GGTC CGTCGG GAACAGCCACGTCAG TERM 309 340990 - 340975 - R 100 -11.8 -5.4505 | opp_overlap 340970 340975 TCGGGCAAGAAAAAA GGCGCC CGAA GGCGCC TTGCGTGTTTTGCCC TERM 310 340975 - 340990 + r 72 -11.8 -3.28785 | opp_overlap 340975, overlap 340970 TCGGGCAAGAAAAAA GGCGCC CGAA GGCGCC TTGCGTGTTTTGCCC Rpic_0324 341853 - 341017 - | 7-cyano-7-deazaguanine reductase Rpic_0325 343373 - 341853 - | threonine dehydratase, biosynthetic Rpic_0326 343516 - 344433 + | K channel inward rectifier conserved region 2 domain protein Rpic_0327 344465 - 345712 + | nucleoside recognition domain protein Rpic_0328 345770 - 346351 + | putative transmembrane protein TERM 311 347954 - 347927 - g 75 -7.6 -4.29106 | gap 1 GCCGAGACCAAGAAA CCCGGCGGCGCGA TCC TCGCGG-GCCTGG AACACCTGGACGAGC TERM 312 348748 - 348716 - g 78 -7.6 -4.33417 | opp_overlap 348720 348722 GCGATCCACAAGAAA GTGCTGCGCGGC CGCGTGTTC GTCGCGCTGCAC ATGCACGCCGGCGAC Rpic_0329 346553 - 350590 + | FAD linked oxidase domain protein TERM 313 350694 - 350665 - g 71 -10.7 -3.66178 | opp_overlap 350658 350665 TGGCGTAACGCCAAA GCGCGCGTGGT GCTGGTCG AGCACGCGCGC TTTCCGGGTTTCTGC TERM 314 350665 - 350694 + G 71 -10.7 -3.65426 | opp_overlap 350665, overlap 350658 TGGCGTAACGCCAAA GCGCGCGTGGT GCTGGTCG AGCACGCGCGC TTTCCGGGTTTCTGC Rpic_0330 350593 - 351030 + | histidine triad (HIT) protein TERM 315 352463 - 352448 - g 72 -8.2 -4.07568 | CGGGCTGCGGCAAAA GCACGC TGGT GCGCGC CGTGGCCGGCATCTG Rpic_0331 351145 - 352989 + | ABC transporter domain protein Rpic_0332 353021 - 353437 + | protein of unknown function DUF971 TERM 316 353558 - 353539 - g 81 -9.2 -4.32034 | opp_overlap 353537 353539 353540, overlap 353540 CGATGAGCAGGAAAA GGCCGGCA AGGT TGCCGGCG TGTTTCATTCCGTCG TERM 317 353557 - 353540 - g 74 -12.7 -3.18738 | opp_overlap 353539 353537 353540, overlap 353539 GATGAGCAGGAAAAG GCCGGCA AGGT TGCCGGC GTGTTTCATTCCGTC Rpic_0333 353492 - 354223 + | ubiquinone/menaquinone biosynthesis methyltransferase Rpic_0334 354378 - 355397 + | import inner membrane translocase subunit Tim44 TERM 318 355479 - 355451 - f 84 -11 -4.08394 | gap 1, opp_overlap 355453, overlap 355453 ACATTCCCCGTAAAA TAGGGCCCG-ACC GTCT GGTTCGGGCCCTT TTTGTTGCCCGCCGC TERM 319 355453 - 355477 + F 100 -13.6 -5.06414 | gap 1, opp_overlap 355451 355453 ATTCCCCGTAAAATA GGGCCCG-ACC GTCT GGTTCGGGCCC TTTTTGTTGCCCGCC TERM 320 355477 - 355453 - f 88 -13.6 -3.63922 | gap 1, opp_overlap 355453, overlap 355451 ATTCCCCGTAAAATA GGGCCCG-ACC GTCT GGTTCGGGCCC TTTTTGTTGCCCGCC TERM 321 355651 - 355620 - g 71 -13.8 -2.70932 | gap 1 GCTCGCGCTCAACCA TCTGCTGCG-CCAGG AGC CCTGGGCGCAGGAGA CGTTGCGGCCCTTCG Rpic_0335 355543 - 356205 + | Sterol-binding domain protein Rpic_0336 356202 - 357779 + | 2-polyprenylphenol 6-hydroxylase Rpic_0337 357803 - 358432 + | thiopurine S-methyltransferase Rpic_0338 358663 - 360102 + | Na+/solute symporter Rpic_0339 360350 - 360691 + | regulatory protein, FmdB family TERM 322 361217 - 361228 + G 72 -7.2 -4.27441 | overlap 361203 GCCGACCACGCCCAA CCCG ACGT CGGG TTTCTTCCTGATGAT Rpic_0340 360723 - 361460 + | protein of unknown function DUF502 Rpic_0341 361512 - 363383 + | aspartyl-tRNA synthetase TERM 323 363441 - 363407 - f 100 -23 -3.31322 | opp_overlap 363407 363411 363440, overlap 363411 GCCAACGCTCCACAA CAAACCGCGCCGCC TGACAAG GGCGGCGCGGTTTG TTTTTGGGCGCCTGG TERM 324 363407 - 363441 + F 100 -23.7 -4.57569 | opp_overlap 363407 363411, overlap 363411 363440 GCCAACGCTCCACAA CAAACCGCGCCGCCT GACAA GGGCGGCGCGGTTTG TTTTTGGGCGCCTGG TERM 325 363437 - 363411 - f 100 -18 -4.30987 | opp_overlap 363407 363411, overlap 363407 ACGCTCCACAACAAA CCGCGCCGCC TGACAAG GGCGGCGCGG TTTGTTTTTGGGCGC TERM 326 363411 - 363437 + F 100 -18.7 -4.85782 | opp_overlap 363411 363407, overlap 363407 ACGCTCCACAACAAA CCGCGCCGCCT GACAA GGGCGGCGCGG TTTGTTTTTGGGCGC Rpic_0342 363546 - 364406 + | putative transmembrane protein Rpic_0343 364523 - 365008 + | NUDIX hydrolase Rpic_0344 365010 - 365756 + | Endonuclease/exonuclease/phosphatase Rpic_0345 365753 - 367021 + | phospholipase D/Transphosphatidylase Rpic_0346 367061 - 368725 + | coenzyme A transferase Rpic_0347 369079 - 369720 + | transcriptional regulator, TetR family Rpic_0348 369773 - 371560 + | acyl-CoA dehydrogenase domain protein TERM 327 371574 - 371604 + F 82 -12.4 -3.70722 | overlap 371575 AACAGGCGCACTTAC CCGGGGCGACGCGC AAA GACCGTCGCCCCGC TTGTCTCTTCCTCAC TERM 328 371575 - 371603 + F 79 -15.9 -2.81951 | overlap 371574 ACAGGCGCACTTACC CGGGGCGACGCGC AAA GACCGTCGCCCCG CTTGTCTCTTCCTCA TERM 329 373623 - 373598 - g 84 -14.7 -3.33696 | GGCGGCCTGAAGGAA GCGGCCTTGGC CGCT GCCAAGGCTGC GCAGGCAGCGGGCAG TERM 330 374067 - 374009 - g 74 -10.1 -3.71848 | overlap 374064 CTGGTGGATGAAGAA TGGCTGCTGGCGCTGGAGCGCAAGGCC TTCGT GGACCTGCTCGGCAGCGCCAAGACCCA GGAACGCATCATGGG Rpic_0349 371636 - 374116 + | 3-hydroxyacyl-CoA dehydrogenase NAD-binding Rpic_0350 374150 - 375349 + | acetyl-CoA acetyltransferase TERM 331 375357 - 375387 + F 76 -12.6 -3.35798 | overlap 375358 375360 GCATGTGACCCCACG TCAGGGGGAAGGAT TAA GTTCTTCCCCCTGC TTGTAAATCGCCCGT TERM 332 375358 - 375386 + F 78 -16.1 -2.61264 | overlap 375357 375360 CATGTGACCCCACGT CAGGGGGAAGGAT TAA GTTCTTCCCCCTG CTTGTAAATCGCCCG TERM 333 375360 - 375384 + F 70 -12.9 -2.8474 | overlap 375358 375357 TGTGACCCCACGTCA GGGGGAAGGAT TAA GTTCTTCCCCC TGCTTGTAAATCGCC TERM 334 375547 - 375526 - f 76 -13.7 -3.01003 | overlap 375519 375528 GCAACAGAGGAGACA CACCACCGG GCCA CCGGCGGTG CACCAAGAGGAGGGC Rpic_0351 375568 - 376533 + | DegV family protein Rpic_0352 376560 - 377324 + | Enoyl-CoA hydratase/isomerase TERM 335 377372 - 377346 - T 84 -10.9 -4.11216 | opp_overlap 377351, overlap 377351 CGTTCACCTGCAAAA GAAAACCCGGC GCGAA GCCGGGTTTTT TCTTGGCCGTTGCCC TERM 336 377367 - 377351 - T 100 -10.8 -5.08255 | opp_overlap 377351, overlap 377346 ACCTGCAAAAGAAAA CCCGGC GCGAA GCCGGG TTTTTTCTTGGCCGT TERM 337 377351 - 377367 + T 100 -10.8 -5.45652 | opp_overlap 377351 377346 ACCTGCAAAAGAAAA CCCGGC GCGAA GCCGGG TTTTTTCTTGGCCGT Rpic_0353 377827 - 377390 - | thioesterase superfamily protein TERM 338 378992 - 378959 - g 77 -13.1 -3.30159 | gap 1, overlap 378941 CGAAGTCGCCGACAA GCCCG-ACGCTCCGCC GCT GACGGTGCATGCGGGC GAAGTGCGCTTCGCG Rpic_0354 377919 - 379757 + | ABC transporter related TERM 339 379835 - 379865 + G 72 -8.9 -4.08064 | gap 1, opp_overlap 379796, overlap 379836 CAGCTTTTCGCGCTC GGCCGAGCTGCGGC ACGT GACGCAGC-CGGCG TTTTCGCGGCGCATT Rpic_0355 379773 - 380717 + | transcriptional regulator, LysR family Rpic_0356 380869 - 382170 + | Glu/Leu/Phe/Val dehydrogenase TERM 340 382485 - 382513 + F 84 -8.7 -4.56597 | TGTTGCAGAGCGTTG CCGTGCATGGCGC TGC GCGTCTTGTCCGG TTTTTCGGAAAAGCA Rpic_0357 382692 - 383600 + | extracellular solute-binding protein family 3 TERM 341 383636 - 383682 + F 100 -13.9 -4.56597 | gap 1, opp_overlap 383640, overlap 383640 GATACAAGCGTCACC GAAACGGAAGGCA-AAGGCCGG TTAA CAGGTCTTCTCCCTTCCGTTTC TTTTTGAGGGAACCA TERM 342 383640 - 383678 + F 100 -8.9 -4.85782 | gap 1, opp_overlap 383640, overlap 383636 CAAGCGTCACCGAAA CGGAAGGCA-AAGGCCGG TTAA CAGGTCTTCTCCCTTCCG TTTCTTTTTGAGGGA Rpic_0358 383700 - 384428 + | polar amino acid ABC transporter, inner membrane subunit Rpic_0359 384446 - 385129 + | polar amino acid ABC transporter, inner membrane subunit Rpic_0360 385126 - 385860 + | ABC transporter related TERM 343 386033 - 386002 - T 87 -17.5 -3.05384 | opp_overlap 386008, overlap 386008 CCGGGTTGGAGGCAA CAAAAAGCCGCTC TTTCAG GAGCGGCTTTTTG TTGGGCGATGATCAT TERM 344 386008 - 386027 + T 100 -11.4 -5.06816 | opp_overlap 386002 386008 TGGAGGCAACAAAAA GCCGCTCT TTCA GGAGCGGC TTTTTGTTGGGCGAT TERM 345 386027 - 386008 - T 100 -10.7 -5.10461 | opp_overlap 386008, overlap 386002 TGGAGGCAACAAAAA GCCGCTC TTTCAG GAGCGGC TTTTTGTTGGGCGAT Rpic_0361 386880 - 386050 - | glutamine amidotransferase class-II Rpic_0362 387039 - 388337 + | Hydroxypyruvate reductase TERM 346 389061 - 389096 + G 77 -11 -3.73647 | gap 1, opp_overlap 389051 389054 389050 GAAACGCACCGCCTG GCGCTGGTGG-CAGCGG CCA CCTCGGGCCACCCGCGC TTCTTCCTCGGTACC Rpic_0363 388371 - 389405 + | dihydroorotase, homodimeric type TERM 347 389647 - 389628 - g 75 -9.2 -3.95584 | overlap 389623 389630 CGCTTATGAAGCAAA CATCGCCG CCAC CGGCGAGG TGCCGACGCGGGACA TERM 348 389645 - 389630 - g 71 -10.4 -3.56844 | overlap 389623 389628 CTTATGAAGCAAACA TCGCCG CCAC CGGCGA GGTGCCGACGCGGGA Rpic_0364 389410 - 390210 + | putative transmembrane protein Rpic_0365 391017 - 390571 - | OsmC family protein TERM 349 391437 - 391456 + H 100 -10 -5.86061 | opp_overlap 391437 TTTGGTGGATTCAAA CCCAAGCT TGAT GGCTTGGG TTTTTTTTCGTCCAC Rpic_0366 391718 - 392146 + | ribosomal protein L13 Rpic_0367 392159 - 392551 + | ribosomal protein S9 TERM 350 392596 - 392579 - f 100 -11.3 -5.14563 | opp_overlap 392579 TGCTTCAGCAAAAAA CCACACC CTCG GGTGTGG TTTTTTGTTTTGGAG TERM 351 392579 - 392596 + F 100 -11.3 -5.79595 | opp_overlap 392579 TGCTTCAGCAAAAAA CCACACC CTCG GGTGTGG TTTTTTGTTTTGGAG Rpic_0368 392783 - 393538 + | hypothetical protein Rpic_0369 393582 - 393986 + | protein of unknown function DUF583 Rpic_0370 394113 - 394487 + | iron-sulfur cluster assembly accessory protein TERM 352 394533 - 394506 - T 84 -11.4 -4.07568 | opp_overlap 394512, overlap 394512 CTCCCTCGCTTAAAA GAAAAAGCGCAC TTCG GTGCGCTTTTTT GTTGCCCGCAAAATG TERM 353 394527 - 394512 - T 100 -10.4 -5.45802 | opp_overlap 394512, overlap 394506 CGCTTAAAAGAAAAA GCGCAC TTCG GTGCGC TTTTTTGTTGCCCGC TERM 354 394512 - 394527 + T 100 -10.4 -5.4505 | opp_overlap 394512 394506 CGCTTAAAAGAAAAA GCGCAC TTCG GTGCGC TTTTTTGTTGCCCGC Rpic_0371 395708 - 394554 - | protein of unknown function UPF0075 Rpic_0372 395884 - 397149 + | tyrosyl-tRNA synthetase Rpic_0373 397146 - 397658 + | D-tyrosyl-tRNA(Tyr) deacylase Rpic_0374 397678 - 398358 + | Phosphoglycerate mutase Rpic_0375 399071 - 398355 - | hypothetical protein Rpic_0376 400162 - 399089 - | Holliday junction DNA helicase RuvB Rpic_0377 400807 - 400226 - | Holliday junction DNA helicase RuvA TERM 355 400675 - 400697 + g 70 -11.2 -3.30441 | GCGTGAGCAGGACGA CCTTCTCGCC GGT GGCGGGCAGG TTATAGAACGTGCTC Rpic_0378 402047 - 400908 - | glycerophosphoryl diester phosphodiesterase TERM 356 401629 - 401647 + g 72 -6.7 -4.3208 | gap 1, overlap 401625 CGGATGTTCGGGATG CGCTCGCG TGCG CGC-AGCG TTTTCAGTTCTCCAA TERM 357 401841 - 401855 + g 70 -7.8 -3.96148 | overlap 401827 401849 CTCGATGATGTCCGC GCCGTC GTC GATGGC TTTCTGGTACGAGGC TERM 358 402138 - 402162 + r 71 -8.4 -4.08394 | CTGTCAGCCGACGAG GCGGCCGCGC CGCAC GCGCAGCCCC TTTTGCGCAAGCTGT Rpic_0379 402671 - 402126 - | crossover junction endodeoxyribonuclease RuvC TERM 359 402727 - 402696 - R 100 -19.5 -3.89215 | opp_overlap 402696 GGGCAGAAATGGAAA CGGGGCAAGGCGC CAGTTT ACGCCTTGCCCCG TTCGTTCGTCGCGTG TERM 360 402696 - 402727 + r 95 -18.8 -3.40371 | opp_overlap 402696 GGGCAGAAATGGAAA CGGGGCAAGGCG CCAGTTTA CGCCTTGCCCCG TTCGTTCGTCGCGTG Rpic_0380 404328 - 402754 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Rpic_0381 404658 - 404425 - | transcriptional regulator, Fis family Rpic_0382 405722 - 404655 - | TIM-barrel protein, nifR3 family TERM 361 405046 - 405020 - G 75 -13.7 -3.02144 | gap 1, overlap 405001 CGATCTCGCGGAACA GCCACG-GGCGC CCCT GCGCCGCGCGGC CGATCATGATGGCGT TERM 362 405062 - 405106 + g 81 -16.4 -2.63631 | gap 1 CGATCATGATGGCGT CGGCGCCGGTCACGGCC-AGC ACGT GCTTGGCCTTGGCCGGCGTGG TGATGTCGCCGTTGG Rpic_0383 407201 - 405918 - | FAD dependent oxidoreductase Rpic_0384 408440 - 407205 - | 2-polyprenyl-6-methoxyphenol 4-hydroxylase Rpic_0385 409816 - 408437 - | peptidase M24 Rpic_0386 410043 - 412100 + | diguanylate cyclase/phosphodiesterase Rpic_0387 412797 - 412105 - | Nucleotidyl transferase TERM 363 412321 - 412335 + g 72 -11.4 -3.44146 | opp_overlap 412285 CCGCTCGGTGCCGTC GGCGTG GAG CACGCC TTCGTTATCCAGCGC TERM 364 412492 - 412473 - G 78 -13.6 -3.25192 | overlap 412471 CGTAATCGCAGAACA CATCGCCG CTGA CGGCGATG AATACGCTGTGGCCC Rpic_0388 413141 - 412815 - | branched-chain amino acid transport Rpic_0389 413866 - 413138 - | AzlC family protein Rpic_0390 414939 - 413866 - | aminoglycoside phosphotransferase Rpic_0391 415116 - 417557 + | Organic solvent tolerance protein TERM 365 417729 - 417708 - g 85 -5.1 -5.055 | gap 1, opp_overlap 417711, overlap 417711 GCAATCGGCAAAAAA GAGTGCACCG GTG CGGGGCA-TC TTCGCCAACCCCGGT Rpic_0392 417550 - 419052 + | SurA domain TERM 366 419070 - 419100 + F 100 -20.5 -3.92869 | gap 1, opp_overlap 419057 TACGGGCATCCGCAT CGCTCACGGCCGCC TGCG GGCGGCCGTG-GCG TTTCTAGATCGCTCC Rpic_0393 419141 - 420157 + | 4-hydroxythreonine-4-phosphate dehydrogenase Rpic_0394 420190 - 421035 + | dimethyladenosine transferase Rpic_0395 421927 - 421022 - | protein of unknown function DUF6 transmembrane Rpic_0396 422318 - 421911 - | lactoylglutathione lyase Rpic_0397 423316 - 422438 - | protein of unknown function DUF45 Rpic_0398 424065 - 423313 - | phospholipid/glycerol acyltransferase Rpic_0399 424655 - 424077 - | histidinol-phosphate phosphatase family protein Rpic_0400 426780 - 424687 - | glycyl-tRNA synthetase, beta subunit TERM 367 425588 - 425623 + g 77 -13.2 -3.30159 | gap 1 GCTTTGGCCAGCAGC GCGCCGCGCGAGGCGTG TGC CACGTC-CGCGCCGAGC TTCTCGGCCAGTTGG TERM 368 425797 - 425764 - G 81 -10.9 -3.9461 | gap 1, opp_overlap 425761 425764 425773 CTGCTCGAAGAAGAA GCGCGC-GTCGGCCAG GCG CGGGCGGACCACGCGC TCATTGCCTTGAATG Rpic_0401 427526 - 426867 - | conserved hypothetical signal peptide protein Rpic_0402 428509 - 427523 - | glycyl-tRNA synthetase, alpha subunit TERM 369 428136 - 428156 + g 72 -8.2 -4.12456 | ACCTCCCAGCCGAGG CCCCAGGC GCCGA GCGTGGGG TTTTCCCAGTCGTCT TERM 370 428611 - 428573 - R 72 -13.2 -2.52896 | gap 2 CGACGGTGGAATGCA GCGGCGGGCACGGGAAGC GCCTG GCT-CCC-TGCCCGCCGT AAAACGTTGAATTTT TERM 371 428616 - 428630 + r 83 -2.8 -5.24129 | CTGCCCGCCGTAAAA CGTTGA ATT TTAGCG TTTTTTGTCAGCGAC Rpic_0403 430196 - 428685 - | apolipoprotein N-acyltransferase TERM 372 428764 - 428732 - G 72 -11.1 -3.44229 | overlap 428733 428735 ATGCCACCAGCAGAA CCAGCGCGCCCAGGC CCA GCGCGGGCGCGTTGC CGGTCCGCACGAATG TERM 373 428763 - 428733 - G 75 -14.6 -2.66216 | overlap 428732 428735 TGCCACCAGCAGAAC CAGCGCGCCCAGGC CCA GCGCGGGCGCGTTG CCGGTCCGCACGAAT Rpic_0404 431190 - 430261 - | CBS domain containing protein Rpic_0405 432531 - 431317 - | hypothetical protein TERM 374 432879 - 432861 - R 100 -13.1 -4.63479 | CATGAGAAAGCAAAA CGCCGGC GCGAA GCCGGCG TCTGAGCATCAAGCG Rpic_0406 433716 - 432904 - | protein of unknown function UPF0054 Rpic_0407 434721 - 433729 - | PhoH family protein Rpic_0408 436113 - 434743 - | tRNA-i(6)A37 thiotransferase enzyme MiaB Rpic_0409 436579 - 436166 - | hypothetical protein Rpic_0410 437668 - 436670 - | putative transmembrane protein TERM 375 437786 - 437769 - R 100 -12.7 -4.8622 | opp_overlap 437769 437753 CGCCCCAATGAAAAA CGCCACC CGGA GGTGGCG TCTTGCGATGGAGCA TERM 376 437769 - 437786 + r 72 -12.7 -3.05844 | opp_overlap 437769, overlap 437753 CGCCCCAATGAAAAA CGCCACC CGGA GGTGGCG TCTTGCGATGGAGCA Rpic_0411 438738 - 437812 - | OmpW family protein Rpic_0412 439867 - 438950 - | putative lipoprotein transmembrane Rpic_0413 441627 - 439888 - | AMP-dependent synthetase and ligase Rpic_0414 443048 - 441729 - | acetyl-CoA acetyltransferase TERM 377 441918 - 441957 + g 72 -8.5 -4.08394 | gap 2, overlap 441946 ATTCACGTTCAGCTT GCTACGGTCGATGCTGCCC ATGG GGGC-GCTGCGGCCG-AGC TTTTCGCGGCAGTAT TERM 378 442282 - 442322 + g 83 -14.6 -3.19463 | CCGGCCGTCATGGTG CCGGCGGCGCTGCGGTCG AATAC CGGCTGCAGCTTCGCCAG TTGCTCGATGGTCAA Rpic_0415 443973 - 443053 - | MaoC domain protein dehydratase TERM 379 443833 - 443865 + g 77 -11.2 -3.75153 | gap 1, overlap 443838 CTCCTGGCGCACCAG GGTGTGGCGCGGCAG CGGC CCGCCGCGCC-TGCC TTTGCGTTGCGACAG TERM 380 443838 - 443861 + g 75 -15.2 -2.68071 | overlap 443833 GGCGCACCAGGGTGT GGCGCGGCAG CGGC CCGCCGCGCC TGCCTTTGCGTTGCG Rpic_0416 445393 - 443981 - | short-chain dehydrogenase/reductase SDR Rpic_0417 447938 - 445428 - | Protein of unknown function DUF1974 TERM 381 447487 - 447524 + g 80 -4.9 -4.81249 | gap 1, overlap 447488 GACAGGTCCTGCCAG ATCTGCGTGCTTTCCCAA TCG TTGGCAAGGT-CGCAGAG TTTTTCGGTTTCCAC Rpic_0418 449124 - 448066 - | transcriptional regulator, TetR family Rpic_0420 449858 - 451540 + | DEAD/DEAH box helicase domain protein TERM 382 452458 - 452475 + G 71 -9.1 -3.73968 | GCCTGGTTGGCGCGT CGCTGGA ACGA TCCGGCG TTTCCTGCAGCGTTT Rpic_0421 451546 - 452580 + | aminoglycoside phosphotransferase TERM 383 452560 - 452599 + T 100 -18 -3.60971 | gap 1, opp_overlap 452566, overlap 452566 CAGATCGCGCTGTTG GACGAACCGCCGCTCTGGT GAA ACC-GAGCGGCGGTTTTTC TTTGAGGCTTGGGCT TERM 384 452566 - 452593 + T 100 -17.8 -5.27938 | gap 1, opp_overlap 452566, overlap 452560 GCGCTGTTGGACGAA CCGCCGCTCTGGT GAA ACC-GAGCGGCGG TTTTTCTTTGAGGCT TERM 385 452593 - 452566 - T 90 -17.8 -3.14132 | gap 1, opp_overlap 452566 452560 GCGCTGTTGGACGAA CCGCCGCTCTGGT GAA ACC-GAGCGGCGG TTTTTCTTTGAGGCT Rpic_0422 453510 - 452614 - | Pirin domain protein Rpic_0423 453659 - 454576 + | transcriptional regulator, LysR family TERM 386 454805 - 454826 + F 100 -15.9 -5.89947 | GTGGGAAGCACCGCC GCCCGGACA TCAT TGTCCGGGC TTTTTTTTCCGTTTG Rpic_0424 455034 - 455774 + | two component transcriptional regulator, winged helix family TERM 387 455833 - 455800 - f 70 -10.1 -3.49653 | opp_overlap 455802 455803, overlap 455801 ATCATTCGCACAGAA TGGGGCGCCACCGCA GGAA TGCGGCGGCGCCGTT TTTGTTGCTCATCGA TERM 388 455832 - 455801 - f 73 -13.6 -2.69471 | opp_overlap 455802 455803, overlap 455800 TCATTCGCACAGAAT GGGGCGCCACCGCA GGAA TGCGGCGGCGCCGT TTTTGTTGCTCATCG TERM 389 455802 - 455831 + F 100 -14.9 -5.15167 | opp_overlap 455801 455800, overlap 455803 CATTCGCACAGAATG GGGCGCCACCGCA GGAA TGCGGCGGCGCCG TTTTTGTTGCTCATC TERM 390 455803 - 455830 + F 100 -18.4 -3.68016 | opp_overlap 455801 455800, overlap 455802 ATTCGCACAGAATGG GGCGCCACCGCA GGAA TGCGGCGGCGCC GTTTTTGTTGCTCAT TERM 391 456125 - 456169 + G 84 -12.8 -3.80174 | overlap 456111 TGTATGTGGTGCCTG CCGGCGTGCCG-CACAGCGTGG ACG CCG-GCAGCGCCGGCACGCTGG TTATTCTGGACGTGT Rpic_0425 455854 - 456186 + | Cupin 2 conserved barrel domain protein Rpic_0426 456745 - 456170 - | hypothetical protein Rpic_0427 457973 - 456765 - | monooxygenase FAD-binding TERM 392 457545 - 457527 - G 75 -9.6 -4.05714 | overlap 457530 ATCGGCAATCACAAA CAAGTCGA AGA TCGACTCG CCCTGTGCGTGCGTG TERM 393 457542 - 457530 - G 71 -7.7 -4.1523 | overlap 457527 GGCAATCACAAACAA GTCGA AGA TCGAC TCGCCCTGTGCGTGC TERM 394 458640 - 458625 - g 71 -11.8 -3.28924 | GAGCGCCCCCGACAA GCGCGG CCGC CCGCGC TTCACGCTGCCGGGC Rpic_0428 458095 - 459018 + | transcriptional regulator, LysR family TERM 395 461191 - 461202 + G 79 -7.2 -4.4648 | overlap 461182 GGATGTTGCGCTGGA CGCG TGCG CGCG TTTTCTGGTGGCGCT Rpic_0431 460523 - 461509 + | Succinylglutamate desuccinylase/aspartoacylase TERM 396 461518 - 461566 + T 88 -13.3 -3.67052 | gap 2, opp_overlap 461511, overlap 461520 GGCCTAAACGCCCAG CATGGCGCGCAACGTGCCGAGCA CGACT TGC-CGGCA-GTTGCGCACCATC TTCTCTTCGGGATCT TERM 397 461520 - 461564 + T 89 -15.9 -3.41292 | gap 2, opp_overlap 461511, overlap 461518 CCTAAACGCCCAGCA TGGCGCGCAACGTGCCGAGCA CGACT TGC-CGGCA-GTTGCGCACCA TCTTCTCTTCGGGAT Rpic_0432 462174 - 461506 - | transcriptional regulator, TetR family TERM 398 462114 - 462132 + g 78 -7.3 -4.42386 | overlap 462115 GTGCCTCCGGCGCCA CGCCGCC ATACG GGCGGCC TTTTCTGACTGGGGC TERM 399 462812 - 462787 - g 71 -12.5 -3.23692 | opp_overlap 462804, overlap 462789 TACTACGACTACGAA GAGGGCCACGC CCCG ACGTGGCCCGC GATGGACACTTTCCA TERM 400 462810 - 462789 - g 78 -13.7 -3.18023 | opp_overlap 462804, overlap 462787 CTACGACTACGAAGA GGGCCACGC CCCG ACGTGGCCC GCGATGGACACTTTC Rpic_0433 462283 - 463833 + | FAD dependent oxidoreductase Rpic_0434 463857 - 464813 + | alpha/beta hydrolase fold TERM 401 464851 - 464886 + T 91 -13.4 -3.73224 | opp_overlap 464853 464854 464860, overlap 464853 464854 464860 AGGGACGCAGCAGAA AAGCAAAAAGCCCTGC CGAA GCAGGGCTTTTTGGTA TTTGGTGGCGAATCA TERM 402 464884 - 464853 - T 100 -16 -4.4767 | opp_overlap 464851 464853 464854 464860, overlap 464854 464860 GGACGCAGCAGAAAA GCAAAAAGCCCTGC CGAA GCAGGGCTTTTTGG TATTTGGTGGCGAAT TERM 403 464853 - 464884 + T 93 -16 -3.45027 | opp_overlap 464853 464854 464860, overlap 464851 464854 464860 GGACGCAGCAGAAAA GCAAAAAGCCCTGC CGAA GCAGGGCTTTTTGG TATTTGGTGGCGAAT TERM 404 464854 - 464883 + T 88 -19.5 -2.66695 | opp_overlap 464853 464854 464860, overlap 464853 464851 464860 GACGCAGCAGAAAAG CAAAAAGCCCTGC CGAA GCAGGGCTTTTTG GTATTTGGTGGCGAA TERM 405 464883 - 464854 - T 95 -19.5 -3.2812 | opp_overlap 464854 464853 464851 464860, overlap 464853 464860 GACGCAGCAGAAAAG CAAAAAGCCCTGC CGAA GCAGGGCTTTTTG GTATTTGGTGGCGAA TERM 406 464877 - 464860 - T 100 -12.7 -5.1417 | opp_overlap 464854 464853 464851 464860, overlap 464854 464853 GCAGAAAAGCAAAAA GCCCTGC CGAA GCAGGGC TTTTTGGTATTTGGT TERM 407 464860 - 464877 + T 100 -12.7 -4.946 | opp_overlap 464860 464854 464853, overlap 464854 464853 464851 GCAGAAAAGCAAAAA GCCCTGC CGAA GCAGGGC TTTTTGGTATTTGGT Rpic_0435 465349 - 465221 - | hypothetical protein TERM 408 465653 - 465685 + G 85 -7.5 -4.62783 | AGAAGCTTTTTTGCA GCCTTCGCCGCAGGC CTC GTTCGGGGCGACGGC TTTTTCAAGTCGCTA TERM 409 465772 - 465759 - g 74 -2.3 -4.72272 | overlap 465760 CCTTGGCAGGAAAAA TGGGT ATTG ACCCG TCCATCGCGTCGACT Rpic_0436 465455 - 465844 + | hypothetical protein TERM 410 465993 - 466012 + F 82 -15 -3.23042 | opp_overlap 465993 GGCTTCCACTGAGAA GCGACCCC GGTC GGGGTCGC TTAATCATGCATATT TERM 411 466012 - 465993 - f 86 -15 -3.35679 | opp_overlap 465993 GGCTTCCACTGAGAA GCGACCCC GGTC GGGGTCGC TTAATCATGCATATT TERM 412 466206 - 466222 + F 78 -4.3 -4.78149 | CTTCGACCGTAATGC CAGGGCG CCC CCCTCTG TTTTTGCGTTGTGCC TERM 413 466388 - 466412 + F 70 -3.5 -4.70879 | overlap 466389 TTGCATCTCGTTCCC GTAGGCGTCGA CCA TTGGCGTCTAG TTTTTGAACTTTCGA Rpic_0437 466461 - 466955 + | McrBC 5-methylcytosine restriction system component-like protein TERM 414 467341 - 467365 + T 71 -5.7 -4.38927 | opp_overlap 467350 467352 CAGGGCTTTCTGCAG GCGCCAG AACAGCGCAAA CTGGCGC TTTGTTATGTAGAAA TERM 415 467410 - 467432 + T 71 -7 -4.21744 | opp_overlap 467414, overlap 467404 GCGTTGCCTGGCGGC CAAATGCCCA CCT TGGGTATCTG TTTCGTTTCTTAACT TERM 416 467530 - 467506 - T 71 -8.6 -4.07568 | overlap 467507 467509 TTTTGGTGGTGAAAA TGAGCGACAA GGGTG TTGTCGCTCC AAAGCAGGAGGCTGA TERM 417 467529 - 467507 - T 72 -12.1 -3.04398 | overlap 467506 467509 TTTGGTGGTGAAAAT GAGCGACAA GGGTG TTGTCGCTC CAAAGCAGGAGGCTG Rpic_0438 469287 - 467686 - | phage integrase TERM 418 468098 - 468113 + g 70 -6.1 -4.30416 | overlap 468096 TGTACGGGCACCATT CGCTC CGAGGC GAGCG TTTTGAGTTCCTGGT TERM 419 469450 - 469414 - H 84 -17.4 -2.73159 | opp_overlap 469417 469418, overlap 469419 TCAAGGGCTTGAAAG CAAAACTGCGCGCTCC TTGCG GAAGCGCGCAGCCTTG GTAATGCATGGTGGC TERM 420 469445 - 469419 - H 100 -15.9 -4.54727 | opp_overlap 469418 469417, overlap 469414 GGCTTGAAAGCAAAA CTGCGCGCTCC TTGCG GAAGCGCGCAG CCTTGGTAATGCATG Rpic_0439 469794 - 470816 + | ATPase Rpic_0440 470844 - 471803 + | hypothetical protein Rpic_0441 471980 - 472939 + | plasmid replicase Rpic_0442 473684 - 473259 - | hypothetical protein Rpic_0443 474980 - 473700 - | MT-A70 family protein TERM 421 474944 - 474973 + g 70 -5 -4.41895 | opp_overlap 474919, overlap 474918 474915 474914 474912 474907 CGTGGATGACGAAGC CGCCGACTGGTG TTGCTT TATCAGTTGGTG TTTTCATTGCGGCTT Rpic_0444 475394 - 474996 - | hypothetical protein Rpic_0445 475533 - 476390 + | hypothetical protein Rpic_0446 477463 - 476387 - | hypothetical protein TERM 422 479608 - 479622 + G 71 -7.8 -4.07687 | opp_overlap 479597 479596 AACGTCAAGCACCAC GGCTTG ATT CAGGCC TTTTCGCGCACCAAT TERM 423 479997 - 479978 - g 75 -4.3 -4.70583 | gap 1, overlap 479987 GCGAGGAACAGAAAA CGCAGATC ACGCA GATC-GCG TCGCCCGACCAGTTG Rpic_0447 477646 - 480615 + | type I site-specific deoxyribonuclease, HsdR family Rpic_0448 480605 - 481912 + | restriction modification system DNA specificity domain TERM 424 482636 - 482610 - g 70 -8 -3.9461 | opp_overlap 482615 TTTCGTCAACAAGAA CTCAACAGGTAG TGG CTACGTGTTGCG TGAGGAAATGGGCGA Rpic_0449 481909 - 483009 + | anticodon nuclease Rpic_0450 483006 - 484619 + | type I restriction-modification system, M subunit TERM 425 484628 - 484650 + F 86 -13.5 -3.53444 | GCCGTGATGAGCGCG GCCAAGACC AGACC GGTCTTGGC TTTCAGCCGAGATGA Rpic_0451 484957 - 485367 + | hypothetical protein Rpic_0452 485364 - 486737 + | Relaxase/mobilization nuclease family protein TERM 426 486756 - 486774 + F 74 -6.6 -4.4078 | overlap 486757 486771 CGACGTATCCGAGTG TCCGGGTG TTT TACCCGGC TTTTCGTTGACGCGG Rpic_0453 486839 - 487147 + | hypothetical protein Rpic_0454 488115 - 487120 - | hypothetical protein Rpic_0455 489248 - 488148 - | hypothetical protein Rpic_0456 489790 - 489269 - | hypothetical protein Rpic_0457 490532 - 489855 - | hypothetical protein Rpic_0458 491809 - 490598 - | hypothetical protein TERM 427 491228 - 491210 - G 77 -12.4 -3.61398 | CGTGCCGCCCAAGAA CGACGGCG AGC CGCCATCG CTGGCATTGCGGGTT Rpic_0459 491925 - 492170 + | transcriptional regulator, XRE family TERM 428 492319 - 492285 - T 72 -11.4 -3.27298 | opp_overlap 492312 GTGCTCAAGGAGCAA TCAGGCGAAGGCTGAT GGC ACGAGCCACCGCCTGA CGACGGTTTGTGGCA Rpic_0460 493035 - 492274 - | transcriptional regulator, LuxR family TERM 429 492909 - 492889 - G 74 -4.7 -4.56775 | gap 1, overlap 492891 ATCGTCCTTGAAAAA GT-GCCGG GCATCA CCGGCGAC GAGCAGCGGCGAGTA Rpic_0461 493639 - 493040 - | hypothetical protein Rpic_0462 495053 - 493734 - | integrase family protein TERM 430 494478 - 494511 + g 74 -10.1 -3.79678 | overlap 494479 GGTCTTCGCATTGAT TCGGCTGGCCGACGC ATTG GCGGCGAGCAGCCGG TTCTTGTAGGCGATT TERM 431 494946 - 494929 - G 70 -6.2 -4.2461 | ACGTTCAGTAACAAA GCGGAC AGTTTA GCCCGC TGGAAATCTTTTGTG TERM 432 495127 - 495097 - R 100 -13.5 -5.58179 | gap 1, opp_overlap 495090 CACCACAAGAAAAAA GCCCTTGA-ACTTC GTGA GAAGTATCAAGGGC TTACAGCATTTGGTG Rpic_0463 496966 - 495263 - | major facilitator superfamily MFS_1 TERM 433 497518 - 497504 - g 74 -2.1 -4.72986 | overlap 497509 GATTGGTAGGAAAAA TCGAA GCGCA TCCGA AATATGCGCAGCTCA Rpic_0464 497479 - 497787 + | protein of unknown function DUF485 Rpic_0465 497784 - 499514 + | SSS sodium solute transporter superfamily TERM 434 499700 - 499722 + G 77 -11.2 -3.75024 | AGAGCATCCTCGATA CGGGTGCCGC TCC GCAGCACCTG TTCTTGATCATCAAG TERM 435 500200 - 500232 + G 73 -12 -3.37796 | overlap 500155 CTGCAAGGCACGCCG CTGGATCGTCTGCC GGTGG GGCGGATGAGCCAG TTCTCGCTCATCACC TERM 436 501006 - 501033 + G 71 -10.4 -3.57144 | overlap 501007 AGCCTTCAGTGCCGC GCCGGGCTGGCG CGAT CGCCTGCTCGGG TTTGGCGATCCCGAC TERM 437 501007 - 501032 + G 71 -13.9 -2.74144 | overlap 501006 GCCTTCAGTGCCGCG CCGGGCTGGCG CGAT CGCCTGCTCGG GTTTGGCGATCCCGA Rpic_0466 499579 - 501405 + | putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase Rpic_0467 501422 - 502072 + | Exonuclease RNase T and DNA polymerase III Rpic_0468 502395 - 502081 - | hypothetical protein Rpic_0469 503987 - 502392 - | integral membrane sensor signal transduction histidine kinase Rpic_0470 504690 - 503980 - | two component transcriptional regulator, winged helix family Rpic_0471 504956 - 506014 + | recA protein TERM 438 506061 - 506086 + F 100 -13.3 -5.27335 | CTATCGAGCTTCATA CGCCTGCCGTT CCCC AACGGTGGGCG TTTTTCTTTGGAACC Rpic_0472 506125 - 506604 + | regulatory protein RecX Rpic_0473 506891 - 507517 + | hypothetical protein Rpic_0474 507584 - 508750 + | succinyl-CoA synthetase, beta subunit Rpic_0475 508839 - 509720 + | succinyl-CoA synthetase, alpha subunit TERM 439 509742 - 509771 + F 86 -12.9 -3.85698 | opp_overlap 509748, overlap 509748 509770 AGGTTTGAGGTTGTG CGAGAACGGGGGC TTCG GCTCCCGTTTTTG TTTGTGCGCGACGCG TERM 440 509748 - 509765 + F 100 -10.5 -5.38054 | opp_overlap 509748, overlap 509742 GAGGTTGTGCGAGAA CGGGGGC TTCG GCTCCCG TTTTTGTTTGTGCGC Rpic_0476 509874 - 510569 + | Integral membrane protein TerC Rpic_0477 510755 - 511276 + | putative type 4 fimbrial pilin signal peptide protein TERM 441 511381 - 511365 - f 72 -2.2 -4.84359 | overlap 511366 CCAGCTCCACAAAAA TTGACG ATACA CGTCAC GGCATGTCAAAAACT Rpic_0478 511529 - 512038 + | type 4 fimbrial pilin signal peptide protein TERM 442 512078 - 512061 - f 79 -12.7 -3.53224 | opp_overlap 512061 TAGCTGTTGCTCAAA GAGCGCC TTCG GGCGCTC TTTTTATTTCGCCGA TERM 443 512061 - 512078 + F 100 -12.7 -5.27335 | opp_overlap 512061 TAGCTGTTGCTCAAA GAGCGCC TTCG GGCGCTC TTTTTATTTCGCCGA Rpic_0479 512110 - 513846 + | O-antigen polymerase TERM 444 513898 - 513874 - f 80 -11.5 -3.81414 | opp_overlap 513879, overlap 513879 AGCCTGAAGGAATAA TAAAACGCCTC ATT GAGGCGTTTTT TTTGATGCGCGCAAA TERM 445 513893 - 513879 - f 100 -11.4 -4.95167 | opp_overlap 513879, overlap 513874 GAAGGAATAATAAAA CGCCTC ATT GAGGCG TTTTTTTTGATGCGC TERM 446 513879 - 513893 + F 100 -11.4 -5.86061 | opp_overlap 513879 513874 GAAGGAATAATAAAA CGCCTC ATT GAGGCG TTTTTTTTGATGCGC Rpic_0480 514033 - 514557 + | pilin subfamily protein TERM 447 514573 - 514597 + T 80 -9.9 -4.11183 | opp_overlap 514571 514574, overlap 514575 TTTAAGCGCCAAATG ATGAGAGCGCC GAC GGCGCTCTCTG TTCTTTCTAATCAGC TERM 448 514596 - 514574 - T 75 -13.4 -2.92667 | opp_overlap 514573 514575, overlap 514571 TTAAGCGCCAAATGA TGAGAGCGCC GAC GGCGCTCTCT GTTCTTTCTAATCAG TERM 449 514575 - 514595 + T 100 -16.9 -3.64882 | opp_overlap 514574 514571, overlap 514573 TAAGCGCCAAATGAT GAGAGCGCC GAC GGCGCTCTC TGTTCTTTCTAATCA Rpic_0481 515080 - 514604 - | molybdenum cofactor biosynthesis protein C TERM 450 515256 - 515299 + G 79 -15.2 -3.01712 | overlap 515256 TGTCGACGTGGCTGG CGCCCTTGCCGTTGCCTGTG CTGG CGCAGGCGGTGGCGGTGGCG TCTTCCCCGCCGGCC Rpic_0482 515186 - 516895 + | peptidase M48 Ste24p Rpic_0483 517497 - 516916 - | hypothetical protein Rpic_0484 518566 - 517490 - | alpha/beta hydrolase fold TERM 451 517558 - 517544 - G 72 -3.4 -4.69664 | overlap 517545 TACATCATCGAAAAA GCGCAG GAC CCGTGC GGGCATCCAATCGAC TERM 452 517806 - 517791 - G 70 -6 -4.2717 | AGCACGTCACGAAAA CCGTGC AGCG GCGCGG TGACGAGGTTGTCGA TERM 453 518578 - 518600 + r 82 -14.8 -3.14344 | opp_overlap 518541 TCATCGATCGAGACG GCTGCCACGC CCA GCGCGGCAGC TTAGTGCAGAGAGTG Rpic_0485 519041 - 518601 - | hypothetical protein Rpic_0486 520092 - 519067 - | lipopolysaccharide heptosyltransferase II Rpic_0487 520339 - 520142 - | hypothetical protein Rpic_0488 520667 - 521461 + | AzlC family protein TERM 454 521742 - 521752 + G 70 -2.4 -4.63527 | overlap 521718 CGGCATGATCTTCGT CGGC ATG GGCG TTTTTACCGTGCTGC Rpic_0489 521458 - 521781 + | branched-chain amino acid transport TERM 455 521962 - 521992 + G 78 -15.4 -2.78596 | opp_overlap 521988, overlap 521955 521954 CGAAGCGGCACGGGG CGTGGTTGTGGGCG CTG CGCACGCAACCGCG TGTGGTGGGGCGCTA Rpic_0490 521784 - 522680 + | RarD protein, DMT superfamily transporter Rpic_0491 522800 - 524011 + | Phosphoglycerate kinase TERM 456 524764 - 524728 - g 82 -15.8 -3.04792 | overlap 524708 GCATGATCGCCAAGA TCGAGCGCGCCGAGGC CATCC GCCCGGGCGTGCTCGA AGAGATCCTGGCTGC Rpic_0492 524061 - 525500 + | pyruvate kinase Rpic_0493 525588 - 526652 + | fructose-bisphosphate aldolase, class II, Calvin cycle subtype TERM 457 526677 - 526697 + F 100 -14 -4.28774 | opp_overlap 526677 GTCACATTTAGCAAA CGGCTGGC ACTGC GCCAGCCG TTTTGCATTGCATGG TERM 458 526697 - 526677 - f 93 -14.7 -3.78022 | opp_overlap 526677 GTCACATTTAGCAAA CGGCTGGCA CTG CGCCAGCCG TTTTGCATTGCATGG TERM 459 527510 - 527544 + G 71 -14.3 -2.70932 | opp_overlap 527538 CGTCGCGCTTCTGGC CGGCCGATTCGTACC AGGTC GGTACGAACCCGCCG TCGTTCGACAAGCAG Rpic_0494 526789 - 527712 + | phosphoribosylaminoimidazole-succinocarboxamide synthase Rpic_0495 527728 - 528237 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit Rpic_0496 528257 - 529492 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit Rpic_0497 529506 - 530519 + | Sua5/YciO/YrdC/YwlC family protein Rpic_0498 530665 - 531708 + | lipolytic protein G-D-S-L family TERM 460 531753 - 531729 - T 93 -11.4 -4.28994 | opp_overlap 531732, overlap 531732 CACCACTGAGCAAAA TAACGCCCGC GCGAA GCGGGCGTTC TTGTTTGCGGCGATG TERM 461 531732 - 531750 + T 89 -13.1 -4.08557 | opp_overlap 531729 531732 CACTGAGCAAAATAA CGCCCGC GCGAA GCGGGCG TTCTTGTTTGCGGCG TERM 462 531750 - 531732 - T 95 -13.1 -4.26327 | opp_overlap 531732, overlap 531729 CACTGAGCAAAATAA CGCCCGC GCGAA GCGGGCG TTCTTGTTTGCGGCG TERM 463 531886 - 531869 - T 100 -14.1 -6.07627 | AGGCGCAAAAAAAAA CCGCGCC AAGC GGCGCGG CCGATAGACGGGACA Rpic_0499 532510 - 531983 - | molybdopterin-guanine dinucleotide biosynthesis protein B Rpic_0500 534045 - 532507 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 464 533734 - 533764 + g 71 -12.5 -3.17392 | GGTCAGCAGCTTCAT GGTCGACGCCGGG TTCAT TCCGGCGTCGGCA TTCCATTGCAGGATG TERM 465 533865 - 533849 - G 71 -7.9 -4.07568 | opp_overlap 533851 533854, overlap 533853 TGCGCGCGCGCAAAA GCCAGCG CCA CGTTGGC GGGCAACCCGGCAGG Rpic_0501 536777 - 534186 - | DNA ligase D Rpic_0502 537710 - 536796 - | Ku protein TERM 466 536862 - 536885 + g 70 -7.4 -4.05446 | gap 1, overlap 536858 536863 GCGGGGTGCCCGCTT GCGCGGGGCAG GCT CT-TCCTGCGC TTTGTCGTTGGAGGC TERM 467 537325 - 537347 + g 76 -5.5 -4.56597 | gap 1, overlap 537327 TGCGAGCGCGTCAAT GCCT-CGCGC AGCA GCGCGTAGAC TTTTTCGCCGCGCCG TERM 468 537826 - 537844 + H 75 -2.3 -4.93318 | gap 1, overlap 537823 537825 ATGATGGCTTTTCGG CGCGACGC CTGC GCC-CGCG TTTTTCTCAGTTGTC Rpic_0503 537939 - 539048 + | major facilitator superfamily MFS_1 Rpic_0504 539256 - 539645 + | hypothetical protein TERM 469 539672 - 539699 + G 100 -16.4 -5.38054 | opp_overlap 539670 539672 ATGGGTTCATGAAGA CGCTGATGCATC ACCC GATGCATCGGCG TTTTTCTTTATGGAA TERM 470 539699 - 539672 - g 76 -14.2 -3.13522 | opp_overlap 539672, overlap 539670 ATGGGTTCATGAAGA CGCTGATGCATC ACCC GATGCATCGGCG TTTTTCTTTATGGAA TERM 471 539736 - 539715 - g 72 -12.9 -3.05384 | opp_overlap 539714 TTTTTCTTTATGGAA CGCCGCCGC AGCC GTGGCGGCG ATTGCATTGGCGTGG Rpic_0505 539650 - 540480 + | hypothetical protein Rpic_0506 541258 - 540470 - | protein of unknown function DUF1045 Rpic_0507 542442 - 541267 - | Amidohydrolase 3 Rpic_0508 542583 - 545336 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Rpic_0509 545486 - 546898 + | methyl-accepting chemotaxis sensory transducer TERM 472 547287 - 547266 - T 70 -5 -4.49958 | AGGTCAGCAAAGAAA GGCGCGCC CGAGAT GGCGAACC ACTCCTTGAAGTTCT TERM 473 547417 - 547448 + T 95 -18.8 -3.28684 | opp_overlap 547417, overlap 547404 ACGTCAACCGCCAAA CCATCGCGGCGC GGGAGTTG GCGCCGCGATGG TTCGTCTGCGTGCTT TERM 474 547448 - 547417 - T 100 -18.8 -3.60971 | opp_overlap 547417 547404 ACGTCAACCGCCAAA CCATCGCGGCGC GGGAGTTG GCGCCGCGATGG TTCGTCTGCGTGCTT Rpic_0510 548784 - 547462 - | major facilitator superfamily MFS_1 TERM 475 548866 - 548884 + r 100 -9.5 -4.75776 | GCATGAGTTGGGCCT GGCGCGT CTGCA GCGCGCC TTTTTGGCTTGGCTT Rpic_0511 550311 - 548953 - | Amidase TERM 476 549458 - 549446 - G 71 -9.1 -3.71649 | TCGGGAAATTCGAAA CGCAC GAT GTGCG CGCCGGCACGCTCCA Rpic_0512 551016 - 550339 - | hypothetical protein Rpic_0513 551778 - 551062 - | transcriptional regulator, GntR family TERM 477 553196 - 553159 - g 75 -3.3 -4.83615 | gap 1 GATGCGCTATAAAAA GCTGGCCG-GCTTCGATC CGC AATCGCTGCGCGATCAGC TGCCCATGCCCCGCC Rpic_0514 551954 - 553219 + | monooxygenase FAD-binding Rpic_0515 553265 - 554398 + | Extracellular ligand-binding receptor Rpic_0516 554472 - 554987 + | transcriptional regulator, MarR family TERM 478 555016 - 555035 + T 95 -12.8 -4.14598 | opp_overlap 555016 GCGTGCAAATGACAA GCGGCCCG AAGG TGGGCCGC TTTGCTTTGGTTCGA TERM 479 555035 - 555016 - T 82 -12.1 -3.60151 | opp_overlap 555016 GCGTGCAAATGACAA GCGGCCC GAAGGT GGGCCGC TTTGCTTTGGTTCGA Rpic_0517 555411 - 555070 - | hypothetical protein Rpic_0518 555755 - 556975 + | metal dependent phosphohydrolase Rpic_0519 557154 - 556993 - | hypothetical protein Rpic_0520 557384 - 558370 + | hypothetical protein Rpic_0521 558476 - 558892 + | hypothetical protein Rpic_0522 558979 - 561162 + | TonB-dependent receptor TERM 480 561168 - 561194 + T 80 -15.2 -3.1085 | opp_overlap 561168 GCCGTTCTAAGCAAA TCGGGCCAGC ACATGTC GCTGGCCCGA TGTTGCATCCATTAC TERM 481 561194 - 561168 - T 95 -15.9 -3.90112 | opp_overlap 561168 GCCGTTCTAAGCAAA TCGGGCCAGCA CATGT CGCTGGCCCGA TGTTGCATCCATTAC Rpic_0523 561849 - 561217 - | hypothetical protein Rpic_0524 562572 - 561985 - | hypothetical protein TERM 482 563013 - 562980 - g 73 -5.9 -4.4017 | gap 1, overlap 563009 GCAATTGCCACAAAA CCAGCAGCGTCTGGGG CAG CACCAGA-ACAGCCGG AAACAGCCATGAGCG Rpic_0525 562744 - 563025 + | hypothetical protein Rpic_0526 563022 - 563222 + | hypothetical protein Rpic_0527 563579 - 563241 - | hypothetical protein TERM 483 563518 - 563552 + g 77 -11.2 -3.71873 | GCCAGCCAGTGCAGG CCCGTCTGGCCAGCGC CAA GCGCCAGCCATTCGGG TTTCGGTGTGGGTGC Rpic_0528 563794 - 565257 + | transcriptional regulator, GntR family with aminotransferase domain Rpic_0529 565935 - 565267 - | hypothetical protein TERM 484 565864 - 565834 - G 80 -14.6 -3.07443 | CGACAGCGTATGCAA GGTCGGCTCGGGCG AGG CGCACGCGCCAACC AGCAAGGCCAAGGCA TERM 485 565918 - 565907 - G 79 -2.2 -5.09762 | ACGCGAAGAGAAAAA GACA GCAT CGTC GTTTGCATCGGCATC Rpic_0530 567575 - 565932 - | Mammalian cell entry related domain protein Rpic_0531 568309 - 567572 - | Paraquat-inducible protein A Rpic_0532 569085 - 568306 - | Paraquat-inducible protein A Rpic_0533 569323 - 569814 + | hypothetical protein Rpic_0534 570696 - 569833 - | S-formylglutathione hydrolase TERM 486 570216 - 570184 - G 84 -11.9 -3.95148 | AGACACCGAAGCAAA GCGTTCCCGATGGCG TAG CGCCAGCGTCAACGC GCCGTGGCCGCCCAT Rpic_0535 571825 - 570719 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase Rpic_0536 572030 - 573859 + | methyl-accepting chemotaxis sensory transducer with Cache sensor TERM 487 573893 - 573920 + T 93 -14.8 -3.82083 | overlap 573893 GTTGTCGCGTTACGG GGCCGGGGCGGC GTTT GTTGCCTCGGCC TTTGCCTTGTCCTGC Rpic_0537 574555 - 573887 - | Glutathione S-transferase domain TERM 488 574641 - 574663 + r 78 -9.8 -3.9122 | opp_overlap 574636 574637 574638 CTTGGAAAAATGCGC TGCGGCGGTG CAT CATCGCGGCA TTGTTTCCGCCGCTG Rpic_0538 576566 - 574809 - | diguanylate cyclase TERM 489 576195 - 576236 + g 100 -21.5 -2.55668 | overlap 576195 CAGCCGGTCGATGTT GGCGCGCGCGGCGGCCAGA TGCG TCTGGGCGCGGCGCGCGGC CTTGATGTCGGCCTC TERM 490 576195 - 576237 + g 100 -21.3 -3.26471 | gap 1, overlap 576195 CAGCCGGTCGATGTT GG-CGCGCGCGGCGGCCAGA TGCG TCTGGGCGCGGCGCGCGGCC TTGATGTCGGCCTCG Rpic_0539 577187 - 576906 - | Antibiotic biosynthesis monooxygenase Rpic_0540 577449 - 578498 + | protein of unknown function UPF0118 Rpic_0541 579773 - 578529 - | Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) TERM 491 581263 - 581239 - g 73 -5.6 -4.36595 | GATCGAAACCGAAAA GCCGCACATC GCGCA GATCGGCGGC ATGGTCAAGGAAATC Rpic_0542 580184 - 581770 + | isocitrate lyase and phosphorylmutase TERM 492 581777 - 581751 - f 76 -12.4 -3.32946 | overlap 581749 CGGGTAAGGACAACA CCATGAACCAGT TCC ACTGATTCACGG ATACAGGTCTCGCCC TERM 493 581824 - 581802 - f 93 -15.6 -3.50853 | opp_overlap 581802 TCGCCCGAAGCAGAA CGCCAACCCA TTG CGGGTTGGCG TTTTTTTTGGGGGTG TERM 494 581802 - 581824 + F 100 -14.9 -5.76949 | opp_overlap 581802 TCGCCCGAAGCAGAA CGCCAACCC ATTGC GGGTTGGCG TTTTTTTTGGGGGTG TERM 495 581991 - 582016 + F 100 -4.7 -5.86332 | gap 1, opp_overlap 581981 581990 581996 581997, overlap 581995 581997 GAACATTGCCAAAAC GACAAGCGCCGT CCA ACGGCGTAT-TC TTTTTTTTGGCTTCC TERM 496 581995 - 582013 + F 88 -6.6 -4.97383 | opp_overlap 581990 581996 581997, overlap 581991 581997 ATTGCCAAAACGACA AGCGCCGT CCA ACGGCGTA TTCTTTTTTTTGGCT TERM 497 581997 - 582011 + F 84 -11.4 -4.07951 | opp_overlap 581990 581997 581996, overlap 581995 581991 TGCCAAAACGACAAG CGCCGT CCA ACGGCG TATTCTTTTTTTTGG TERM 498 582587 - 582623 + G 84 -7.2 -4.77157 | gap 1, opp_overlap 582579, overlap 582587 582588 CAACCAAGGGCTGAG C-GCACCGGCCATCGCC GCAT GGGGATGGCGTGTGCCG TTTTTCGTCGGTTGC Rpic_0543 582045 - 583340 + | metabolite/H+ symporter, major facilitator superfamily (MFS) Rpic_0544 583397 - 584179 + | extracellular solute-binding protein family 1 Rpic_0545 585133 - 584216 - | transcriptional regulator, LysR family Rpic_0546 586831 - 585332 - | diguanylate cyclase TERM 499 587061 - 587018 - R 72 -13.1 -3.02461 | CAAGGGCGCGGAAGA GGGCA-GGCGGGCGTCAGTGC CCCC GC-CTGTCGCCTGCCCCGCCC CGCGCGCGGCTCACT Rpic_0547 587935 - 587072 - | NmrA family protein TERM 500 587258 - 587295 + g 70 -7.6 -4.04206 | gap 1 GCTCTCGAATGCGGT CGGGTCGTCGCCGCCGT AGGCC ACGG-GGCGGCGGAGCG TTTCTGTCCAGATCG TERM 501 588319 - 588336 + G 87 -5.5 -5.0133 | CACGCGGACGTCTGC GCATCAG CGCC CCGATGC TTTTTTCCCAGACTG Rpic_0548 588039 - 588938 + | transcriptional regulator, LysR family TERM 502 589155 - 589175 + T 80 -3.8 -5.06414 | overlap 589157 CTGTGCCTCGCGTTT GCGACGCG GCCCA CGCGGCTC TTTTTCTTCAAGGGC Rpic_0551 589757 - 589473 - | hypothetical protein Rpic_0552 590197 - 589817 - | hypothetical protein TERM 503 590264 - 590253 - R 72 -2.2 -4.77438 | gap 1 ACTCAGTATCAAAAA GAGCC ACG GGC-C ACAGAAATACGTCGC Rpic_0553 590569 - 590285 - | hypothetical protein Rpic_0554 590987 - 590661 - | hypothetical protein Rpic_0555 591671 - 591537 - | hypothetical protein Rpic_0556 591699 - 591929 + | hypothetical protein TERM 504 591939 - 591953 + F 100 -12.8 -4.74103 | opp_overlap 591931 591939 AACTGAACCACGCAA GCCGCC TTG GGCGGC TTTTTCGCTTGCGGC TERM 505 591953 - 591939 - f 74 -12.8 -3.13908 | opp_overlap 591939, overlap 591931 AACTGAACCACGCAA GCCGCC TTG GGCGGC TTTTTCGCTTGCGGC Rpic_0557 592011 - 592265 + | hypothetical protein Rpic_0558 592367 - 592579 + | hypothetical protein Rpic_0560 594462 - 593755 - | short-chain dehydrogenase/reductase SDR TERM 506 593879 - 593827 - G 72 -13.4 -3.14132 | gap 1, opp_overlap 593827 TTCGCCTGCCAGGAA TGCCGCCATGGCGGCCACTTCTTCG GGCG CGATGAACCGGCCGATA-GGCGGCA TGCGCGGCGGGGTGT Rpic_0561 595229 - 594465 - | transcriptional regulator, DeoR family Rpic_0562 596468 - 595293 - | glycosyl hydrolase BNR repeat-containing protein Rpic_0563 597933 - 596503 - | Na+/solute symporter Rpic_0564 600356 - 598044 - | 4-hydroxythreonine-4-phosphate dehydrogenase Rpic_0565 601522 - 600353 - | iron-containing alcohol dehydrogenase Rpic_0566 602452 - 601556 - | dihydrodipicolinate synthase TERM 507 602576 - 602562 - R 72 -2.8 -4.78572 | opp_overlap 602529, overlap 602529 TTGTAATCAATAAAA TGATTG AAT CGATCA ATGTTTACCCTGATC Rpic_0567 602999 - 602820 - | hypothetical protein Rpic_0569 603519 - 603797 + | protein of unknown function DUF156 Rpic_0570 603805 - 605109 + | cation diffusion facilitator family transporter Rpic_0571 605235 - 606191 + | hypothetical protein Rpic_0572 606387 - 606803 + | Domain of unknown function DUF1924 TERM 508 606871 - 606923 + GF 75 -8.4 -4.15044 | gap 2, overlap 606874 606876 CTGGCCGTTTCGTTG TTACAGGCCGAGCTGCACGCGCTTGC CTG GCAATCGCGGGC--CTCGGGCTGTCG TTTCTTGCCGCCGCC TERM 509 606874 - 606920 + GF 72 -12.3 -3.10244 | gap 2, overlap 606871 606876 GCCGTTTCGTTGTTA CAGGCCGAGCTGCACGCGCTTGC CTG GCAATCGCGGGC--CTCGGGCTG TCGTTTCTTGCCGCC Rpic_0573 606837 - 607343 + | multihaem cytochrome Rpic_0574 607315 - 608046 + | cytochrome B561 Rpic_0575 608078 - 608752 + | two component transcriptional regulator, winged helix family Rpic_0576 608749 - 610125 + | integral membrane sensor signal transduction histidine kinase TERM 510 610354 - 610339 - g 78 -3.2 -4.87008 | overlap 610340 AACAGATAAAAGAAA TCGATC TTGA GATCGC CGCCGATTCCGAAGA Rpic_0577 610320 - 611246 + | cation diffusion facilitator family transporter TERM 511 611919 - 611939 + F 100 -12.5 -4.42386 | overlap 611920 CCGATGCTTTCCCGA TGCGCCGCG CTC TGCGGCGCG TTTTGTGAATAAACA TERM 512 611920 - 611938 + F 78 -13.8 -3.2511 | overlap 611919 CGATGCTTTCCCGAT GCGCCGCG CTC TGCGGCGC GTTTTGTGAATAAAC Rpic_0578 611980 - 612270 + | chaperonin Cpn10 TERM 513 613412 - 613361 - g 88 -10.8 -4.41895 | gap 1, overlap 613364 613366 AATCGGCAAGGAAAA CACCACGATCATCGATGGCGCAGGC GAT GCCCGCAACATCGAAGCCCGCG-TG AAGCAAGTGCGTGCC TERM 514 613410 - 613364 - g 73 -13.6 -2.88268 | overlap 613361 613366 CGGCAAGGAAAACAC CACGATCATCGATGGCGCAGGC GAT GCCCGCAACATCGAAGCCCGCG TGAAGCAAGTGCGTG Rpic_0579 612375 - 614018 + | chaperonin GroEL TERM 515 614061 - 614114 + F 95 -12.5 -4.1552 | opp_overlap 614076, overlap 614076 TCCTTCGGGATGGCT GTTCCAAACAAAAAACCCCGTGGGT GCGA GCCTGCGGGGTTTTTTGTTGGTCGC TTTGTTAAGACGGTG TERM 516 614099 - 614076 - f 95 -5.1 -5.63517 | opp_overlap 614061 614076 GTTCCAAACAAAAAA CCCCGTGGG TGCGAG CCTGCGGGG TTTTTTGTTGGTCGC TERM 517 614076 - 614099 + F 100 -10.2 -5.5112 | opp_overlap 614076, overlap 614061 GTTCCAAACAAAAAA CCCCGTGGGT GCGA GCCTGCGGGG TTTTTTGTTGGTCGC TERM 518 614297 - 614323 + G 76 -9.5 -4.15044 | overlap 614299 AGCGCCCCCGCTCCA GCTGC-GCCGCAA CCC TTGCGGCTGC-GC TTTATTGGCAGCGGC TERM 519 615064 - 615043 - g 83 -14.5 -3.28712 | opp_overlap 615027, overlap 615060 615063 GTCGCGCCTGCAGAA CGTGGTGTG GAAC CACACCACG CTGGGCGCGCATCGC Rpic_0580 614249 - 615322 + | protein of unknown function DUF898 transmembrane Rpic_0581 615350 - 616435 + | peptidase M48 Ste24p Rpic_0582 616635 - 617000 + | GtrA family protein TERM 520 618226 - 618211 - g 80 -5.4 -4.82901 | gap 1, overlap 618212 GGGCGGCTACAAAAA CCTCGCT ACC AGCG-GG AGCAGCGGCGACCTT Rpic_0583 617222 - 618466 + | hypothetical protein Rpic_0584 618476 - 618973 + | TadE family protein Rpic_0585 618966 - 619412 + | TadE family protein TERM 521 619430 - 619444 + T 71 -7.8 -4.13561 | CAGCTTCTTAATGGT GTGGGT CTG GCCCAC TGTTTTTTCGGGGGA TERM 522 619455 - 619480 + T 100 -13.3 -4.37711 | CCCACTGTTTTTTCG GGGGATGGGCT TAGT GGTCCATCCCC TTTTGCATTTCCTGC TERM 523 619790 - 619767 - T 95 -7.4 -5.35815 | gap 1, opp_overlap 619767 CACATTAAAGAAAAA GGCCAGCC-CA TCG TGAGGTTGGCC TTGTCGTTTGGGCTG TERM 524 619943 - 619966 + T 83 -3 -5.19261 | gap 1, opp_overlap 619941 619937 619936 619943 TACGCAAATCCAAGA GGCAGTCGCCG TCT CGGGCAC-GCC TTTTTTGCTCAGTTT TERM 525 620168 - 620152 - T 95 -6.5 -5.4387 | ATACAAAGGAAAAAA CCCGG CGCGCGT CCGGG AACAGGACCACCGCG Rpic_0586 621209 - 620247 - | type II secretion system protein TERM 526 621007 - 621023 + g 70 -8 -4.03234 | AGTTGCGAGACCGGC TTGGCC CACGT GGCCAA TTTCTCTACCCAGGC Rpic_0587 622252 - 621275 - | type II secretion system protein Rpic_0588 623681 - 622317 - | type II secretion system protein E TERM 527 623545 - 623566 + g 72 -3.6 -4.65916 | overlap 623546 TCCAGATCCACGCGG TCGAGCAC CACTTC GTGCACGG TTTTCTTGAAGTCCC Rpic_0589 624929 - 623721 - | response regulator receiver protein Rpic_0590 625384 - 625046 - | putative lipoprotein Rpic_0591 627401 - 625410 - | type II and III secretion system protein TERM 528 625580 - 625598 + g 81 -8 -4.56597 | opp_overlap 625580 GCGCGGTTTCCCAAA CCGGTTGC GCG GCCGCCGG TTTTTCGGGCGCACC Rpic_0592 628368 - 627517 - | Flp pilus assembly protein CpaB Rpic_0593 629917 - 628418 - | ATPase with chaperone activity TERM 529 629093 - 629065 - G 74 -14.5 -2.62184 | opp_overlap 629092 CGCCGCCCGAGAGCA CCGCGGGCCGATG GCA CATCTGCCAGCGG CGGTCCAGCGGGCGA Rpic_0594 630462 - 629917 - | peptidase A24A prepilin type IV Rpic_0595 630722 - 630552 - | Flp/Fap pilin component Rpic_0596 630939 - 630769 - | Flp/Fap pilin component TERM 530 630983 - 631025 + r 78 -16.5 -2.53995 | gap 1, overlap 630989 TTTTGCCCGTTGTTG CTG-GAGCGTGGGTTGCCAT GTTC ATGGCAACCCACGCTTGCAC TCGCTTGGCATGCAT Rpic_0597 631255 - 631088 - | Flp/Fap pilin component TERM 531 633344 - 633367 + G 70 -11.7 -3.33492 | GTGCCAATGGCCTGT CGAGCGGCG ATCGTG CGCTGCTCG TTGTCGCCTGGCTAC Rpic_0598 632221 - 633492 + | hypothetical protein TERM 532 633695 - 633711 + G 71 -4.3 -4.56629 | overlap 633697 AAGGTCGCGGGTGTC TTTCCGC TTG GCGGCGA TTTTCTGGTGTTCTG Rpic_0599 633500 - 634816 + | hypothetical protein Rpic_0600 634816 - 635829 + | glycosyl transferase family 2 Rpic_0601 637147 - 636086 - | acyltransferase 3 Rpic_0602 638257 - 637157 - | acyltransferase 3 Rpic_0603 639582 - 638254 - | hypothetical protein TERM 533 639122 - 639149 + g 72 -3.2 -4.64676 | gap 1, opp_overlap 639116 ATGAGCCAAGGCAGC CGCAGCGCGCCTG GCA CCGAC-CGCAGCG TTTTGTTGAGCATCC TERM 534 639517 - 639477 - G 74 -13.4 -3.26767 | overlap 639475 639480 639501 AATACTCAAGGAAGA GCA-GGGCCCCGCCGTAC ACATACA GT-CGGCGGGACCCCTGC CAACCTCCCCCCCTC TERM 535 639513 - 639480 - G 73 -13.9 -2.80966 | gap 1, overlap 639477 639475 639501 ACTCAAGGAAGAGCA GGGCCCCGCCGTAC ACATACA GT-CGGCGGGACCC CTGCCAACCTCCCCC Rpic_0604 641007 - 639628 - | sigma54 specific transcriptional regulator, Fis family TERM 536 641749 - 641733 - R 70 -3.6 -4.65895 | GGTGCGATGCAAAAA CTCGGG GGCAA CCAGAG GGGCCTCGAATGGTT TERM 537 641940 - 641909 - R 75 -13.8 -2.86181 | gap 1, overlap 641906 641911 GCAGAACATGAAGCA GATG-CCTGAGGGGC GGC GCCCATCAGGTCATC CTAAAAGATGAGGCG Rpic_0605 642658 - 642134 - | protein of unknown function DUF477 Rpic_0606 643537 - 642674 - | protein of unknown function DUF477 Rpic_0607 644177 - 643551 - | LemA family protein Rpic_0608 644486 - 644283 - | hypothetical protein Rpic_0609 644579 - 645487 + | dihydrodipicolinate synthase TERM 538 645730 - 645753 + T 73 -10.3 -3.60151 | opp_overlap 645730 ACGTCAAAAGAGAAA GGCCAACCT ATCGCG GGGTTGGCC TTGTCGTTTGGGCGG TERM 539 645753 - 645730 - T 84 -9.6 -4.45771 | opp_overlap 645730 ACGTCAAAAGAGAAA GGCCAACC TATCGCGG GGTTGGCC TTGTCGTTTGGGCGG TERM 540 645879 - 645841 - T 74 -3.9 -4.81083 | gap 1 TGCAAGGAGGAAAAA GGAAGGG-AAACTGTTTG AGCG CAGCGAGTTTTCCCTTCC CCTCCTTGCGACATA Rpic_0610 647331 - 646030 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 541 646270 - 646248 - G 77 -13.4 -3.40112 | overlap 646246 AGTAGATGCCAAACA TGCCGCCCAC GCT GTCGGCGGCA AACGGCACACCAACC Rpic_0611 647546 - 647728 + | Rubredoxin-type Fe(Cys)4 protein Rpic_0612 648060 - 648518 + | response regulator receiver protein Rpic_0613 648549 - 648917 + | response regulator receiver protein Rpic_0614 648994 - 649539 + | CheW protein TERM 542 651231 - 651181 - g 87 -14.6 -3.63073 | TACACCGTGGAAGAA CTGCGCGAGCTGGTCGGCCGGGTG CAG CAGACGGCCGAGCAGGTGACGCAG GCATCGTCGGCGGTG Rpic_0615 649798 - 652035 + | methyl-accepting chemotaxis sensory transducer TERM 543 654465 - 654436 - g 74 -11.3 -3.68222 | overlap 654437 TCTGAAGCCGAAGAA GTGCTGGCCGGCG TGCG CGCCGACCTGCAG GGTCTGCAGGCCGCT TERM 544 654464 - 654437 - g 77 -14.8 -2.80612 | overlap 654436 CTGAAGCCGAAGAAG TGCTGGCCGGCG TGCG CGCCGACCTGCA GGGTCTGCAGGCCGC TERM 545 655470 - 655442 - g 82 -15.9 -3.09492 | TGCTGAATCTGAACA GTCGCCCGGTGGC GAT GCATCCGGGCGAC TTCCGCCTGCTCGAT Rpic_0616 652126 - 658155 + | CheA signal transduction histidine kinase TERM 546 658208 - 658174 - T 100 -24.5 -4.82901 | opp_overlap 658174 658177 658180 CGCGCTTCACAAAAA CAACAAGGGGCCGGT GTTCT ACCGGCCCCTTGTTG TTTGCTGCGTGGCGA TERM 547 658174 - 658208 + T 100 -25.2 -3.76224 | opp_overlap 658174, overlap 658177 658180 CGCGCTTCACAAAAA CAACAAGGGGCCGGTG TTC TACCGGCCCCTTGTTG TTTGCTGCGTGGCGA TERM 548 658177 - 658205 + T 100 -21.1 -4.015 | opp_overlap 658174, overlap 658174 658180 GCTTCACAAAAACAA CAAGGGGCCGGTG TTC TACCGGCCCCTTG TTGTTTGCTGCGTGG TERM 549 658180 - 658202 + T 100 -17 -4.12603 | opp_overlap 658174, overlap 658177 658174 TCACAAAAACAACAA GGGGCCGGTG TTC TACCGGCCCC TTGTTGTTTGCTGCG Rpic_0617 659783 - 658227 - | Deoxyribodipyrimidine photo-lyase TERM 550 658404 - 658422 + g 72 -11 -3.51934 | overlap 658401 CACATTGGCTGGTGC CGTCCACG GTG CGTGGATG TATTTGTCGGGCAGC TERM 551 659680 - 659637 - G 70 -11 -3.36273 | gap 1, overlap 659639 659648 659674 GCGGTCGAACACGAA CAC-GCAATAGACCTCGCGGC AGT GCCGCAAGGCATAATGCAGCG CCGCGTGGTCGAAGT TERM 552 659677 - 659639 - G 71 -12.4 -3.25073 | overlap 659637 659648 659674 GGTCGAACACGAACA CGCAATAGACCTCGCGGC AGT GCCGCAAGGCATAATGCA GCGCCGCGTGGTCGA TERM 553 659668 - 659648 - G 80 -14.7 -3.136 | overlap 659639 659637 CGAACACGCAATAGA CCTCGCGGC AGT GCCGCAAGG CATAATGCAGCGCCG Rpic_0618 659863 - 660609 + | pseudouridine synthase TERM 554 660650 - 660638 - f 84 -3.3 -5.28176 | GCCACCCACAAAAAA CCTTG CGC CGAGG GCCGATTCCTCCAAA TERM 555 660833 - 660817 - g 80 -13.7 -3.4072 | CATGTGCGAGCACAA CGAGCGC GGC GCGCTCG GGCTCGTGATCAACC Rpic_0619 660707 - 661279 + | protein of unknown function DUF179 Rpic_0620 661272 - 661703 + | Holliday junction resolvase YqgF TERM 556 661765 - 661798 + G 74 -14.5 -2.57132 | opp_overlap 661740, overlap 661764 ACAACTGCGCACGCG GCTGGCCGACGGCCA CACC TGGTCGGTGGCCGGC ATTGTCAGCGGCGGC TERM 557 662179 - 662162 - g 72 -12.7 -3.05384 | overlap 662166 662171 CTCGTGCTGAGCGAA GCCAGCG AAGG CGCTGGC GCGCGCTTCACCTTC Rpic_0621 661700 - 662218 + | phosphoribosyltransferase Rpic_0622 662289 - 663260 + | aspartate carbamoyltransferase Rpic_0623 663269 - 664546 + | dihydroorotase, multifunctional complex type Rpic_0624 664533 - 665330 + | phospholipid/glycerol acyltransferase Rpic_0625 666188 - 665340 - | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Rpic_0626 667119 - 666241 - | lipopolysaccharide biosynthesis protein TERM 558 666362 - 666328 - G 72 -6.4 -4.22009 | gap 1, overlap 666324 666329 666346 666348 ACCAGCCAACAGAAA CGCCG-AACGCCTCG GAAACA CGGGGCGTTGCGACA CCGTAGCGTCGGAGA Rpic_0627 668222 - 667131 - | glycosyl transferase family 4 TERM 559 667982 - 667969 - G 95 -8.1 -5.09225 | overlap 667956 667955 AGGCCAGCCAAAAAA GCTGG CGTG CCAGC CGTTACCAACATCAA Rpic_0628 669125 - 668283 - | glycosyl transferase family 2 TERM 560 668432 - 668418 - G 70 -5.6 -4.26188 | opp_overlap 668419, overlap 668411 668419 GCCATACAGGCAAAA CTGGCG TTG CGCCAT CCATTCGCTGCGTAC Rpic_0629 670064 - 669138 - | rhamnosyltransferase Rpic_0630 671374 - 670067 - | hypothetical protein Rpic_0631 672453 - 671371 - | acyltransferase 3 Rpic_0632 673391 - 672450 - | glycosyl transferase family 2 Rpic_0633 674635 - 673388 - | polysaccharide biosynthesis protein TERM 561 674601 - 674572 - G 80 -14.3 -3.40403 | overlap 674573 CTTTGTTCAGGACAA GCGCGGCGATGGT CTTC ACCATCACCGCGA TGCCGTTAAGAAGGC TERM 562 674600 - 674573 - G 83 -17.8 -2.64099 | overlap 674572 TTTGTTCAGGACAAG CGCGGCGATGGT CTTC ACCATCACCGCG ATGCCGTTAAGAAGG Rpic_0634 675756 - 674632 - | Glutamine--scyllo-inositol transaminase Rpic_0635 676568 - 675801 - | hypothetical protein TERM 563 676406 - 676422 + g 73 -12.3 -3.39142 | opp_overlap 676401 TGCCAATGCACAGCG GCTGTCC GTC GGACAGC TTGCTTGGATGTCCG Rpic_0636 676975 - 676565 - | WxcM domain protein Rpic_0637 677885 - 676965 - | dTDP-4-dehydrorhamnose reductase TERM 564 677450 - 677438 - G 80 -4.8 -4.7254 | opp_overlap 677448 AGCTGGTACGAAAAA CCAG AGTGG CTGG ATTGGCATCCAATGC Rpic_0638 678436 - 677882 - | dTDP-4-dehydrorhamnose 3,5-epimerase Rpic_0639 679317 - 678433 - | glucose-1-phosphate thymidylyltransferase Rpic_0640 680393 - 679332 - | dTDP-glucose 4,6-dehydratase Rpic_0641 680570 - 681958 + | Phosphomannomutase TERM 565 682316 - 682297 - g 70 -5.6 -4.25848 | gap 1, opp_overlap 682307 AAGGCCTGATCAAAA CGGCGCTCG TTG CG-GCGCAG GCCAAGCTGGTGCCG Rpic_0642 682002 - 683000 + | lipopolysaccharide heptosyltransferase I Rpic_0643 683000 - 684316 + | Three-deoxy-D-manno-octulosonic-acid transferase domain protein TERM 566 685077 - 685034 - g 81 -11.1 -4.11394 | gap 3, opp_overlap 685038 AGGTTATCTGGAAAA CGACCAGCGGCGCGCTGCTGCA GTT TGCCG-AGCGC-CCGCTG-CCG CCGCGCGGCCAGACA Rpic_0644 684418 - 685098 + | protein of unknown function DUF306 Meta and HslJ Rpic_0645 686565 - 685099 - | type I secretion outer membrane protein, TolC family TERM 567 686549 - 686517 - G 73 -9.8 -3.87505 | gap 1, overlap 686522 AGCACAGCACAACAA GCGAACCGCGCGCGG CTAT CCGCGTGCGGCT-AC TGCGAGCAACAGTCA TERM 568 686545 - 686522 - G 84 -15.2 -3.31845 | overlap 686517 AGCACAACAAGCGAA CCGCGCGCGG CTAT CCGCGTGCGG CTACTGCGAGCAACA TERM 569 686623 - 686656 + r 79 -12.5 -3.53012 | gap 1, opp_overlap 686653, overlap 686612 GCGCGGGCGCGTCAG GCCCTGTTCA-GTGCC TGT GGAGCGTGAACAGGGC TTTGCCCGGCGGCGG Rpic_0646 687013 - 686681 - | Rhodanese domain protein Rpic_0647 687686 - 687036 - | Protein-L-isoaspartate(D-aspartate) O-methyltransferase Rpic_0648 688525 - 687782 - | transcriptional regulator, TetR family TERM 570 688648 - 688675 + H 100 -18.6 -3.56836 | opp_overlap 688643 688670 688672, overlap 688626 688638 GTCAATCAGACTGGG CCGCTATTGTGC TGGT GCACAATAGCGG TTTCCGCCCTGATTT Rpic_0649 688707 - 688964 + | protein of unknown function UPF0153 TERM 571 689288 - 689309 + G 72 -13 -3.17075 | opp_overlap 689260 CCAGCCGCTGACAGG GCCGCTGG CCGTCT CCAGCGGC TTGCATTACGACCCG Rpic_0650 688971 - 689564 + | putative transmembrane protein Rpic_0651 689617 - 690498 + | undecaprenol kinase Rpic_0652 690618 - 691730 + | NADH:flavin oxidoreductase/NADH oxidase Rpic_0653 692529 - 691756 - | tRNA (guanine-N(7)-)-methyltransferase TERM 572 692005 - 692023 + g 71 -9.5 -3.78934 | opp_overlap 691990, overlap 691990 692002 CGGGCTCTGGATCAG GCGCCGC TTGTT GTGGCGC TTCTTGTGCCACGGG TERM 573 692601 - 692587 - R 100 -12.8 -5.4833 | GCAGGCAACAAAAAA GCCGCC GAG GGCGGC TTCAGACTGTTCGGT Rpic_0654 693461 - 692748 - | putative protein with proline-alanine-aspartic repeated motif Rpic_0655 695645 - 693591 - | acetoacetyl-CoA synthase TERM 574 694530 - 694518 - G 71 -10.5 -3.63569 | GCAATTGGCGAAGAA CGCCG CGC CGGCG CCAAAGAAGGTCACG Rpic_0656 697237 - 695726 - | succinic semialdehyde dehydrogenase TERM 575 697285 - 697256 - R 70 -10.7 -3.44146 | opp_overlap 697256 GTTCTCCATAAGGAA GGCGGGCCC AGTAGACAAAGA GGGCCCGCC TTTTAGATGCAGCAG TERM 576 697256 - 697285 + r 84 -10.7 -4.18018 | opp_overlap 697256 GTTCTCCATAAGGAA GGCGGGCCC AGTAGACAAAGA GGGCCCGCC TTTTAGATGCAGCAG Rpic_0657 698878 - 697367 - | UbiD family decarboxylase TERM 577 698929 - 698956 + H 93 -6.2 -5.58454 | opp_overlap 698942 ATCACGCGGAGGGGC TGTCCCCCGAAT AGTC GTCCGGGCGACA TTTTTTTGGTGTAGG TERM 578 699232 - 699266 + H 100 -15.7 -4.0371 | opp_overlap 699222 699258 GCACATCAGCATCGC TGCGGGACGTGACCT CCCCA AGGACACGGCCCGCA TTTCTCTGGGCACTA TERM 579 699362 - 699340 - H 74 -4.1 -4.72986 | gap 1, overlap 699341 CATCCTTACTAAAAA CCGTTGCGAT TCGA AACGCA-CGG CGCCAGGCAAAAGAA Rpic_0658 699416 - 700603 + | Lytic transglycosylase catalytic TERM 580 700627 - 700660 + T 100 -18.3 -3.53224 | opp_overlap 700629 700634, overlap 700629 700634 ATTCGCTGCGCTATA TAGGAAAGGCCGTCC TTCG GGACGGCCTTTTCTG TTTGGGCGACGCGTA TERM 581 700629 - 700658 + T 95 -18.7 -3.34398 | opp_overlap 700629 700634, overlap 700627 700634 TCGCTGCGCTATATA GGAAAGGCCGTCC TTCG GGACGGCCTTTTC TGTTTGGGCGACGCG TERM 582 700658 - 700629 - T 81 -16.5 -2.87132 | opp_overlap 700629 700627 700634, overlap 700634 TCGCTGCGCTATATA GGAAAGGCCGTCC TTCG GGACGGCCTTTTC TGTTTGGGCGACGCG TERM 583 700634 - 700653 + T 100 -15 -4.78848 | opp_overlap 700629 700634, overlap 700629 700627 GCGCTATATAGGAAA GGCCGTCC TTCG GGACGGCC TTTTCTGTTTGGGCG TERM 584 700653 - 700634 - T 93 -15 -3.88498 | opp_overlap 700634 700629 700627, overlap 700629 GCGCTATATAGGAAA GGCCGTCC TTCG GGACGGCC TTTTCTGTTTGGGCG Rpic_0659 701867 - 700683 - | aminotransferase class I and II Rpic_0660 702379 - 701912 - | NusB antitermination factor TERM 585 702326 - 702346 + g 71 -10.3 -3.67864 | overlap 702314 TTCGCGCGCACGGCG GCGCGCGCT CTT GGCGGGCGC TTTGGCCTTGGCTTG Rpic_0661 702907 - 702407 - | 6,7-dimethyl-8-ribityllumazine synthase TERM 586 702493 - 702508 + g 76 -6 -4.58395 | overlap 702480 TTTCGACGGCGGTGC GGGCGC AGTC GCGACC TTTTTCGCGGGTGCG TERM 587 702966 - 702956 - R 79 -8.2 -4.51812 | overlap 702957 702958 CGTCAGAAGAAGAAA GCCG GCG CGGC AGTCTCGGCTGCCGC Rpic_0662 704128 - 702989 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase Rpic_0663 704909 - 704256 - | riboflavin synthase, alpha subunit Rpic_0664 706028 - 704916 - | riboflavin biosynthesis protein RibD TERM 588 705294 - 705281 - G 70 -2.3 -4.59773 | overlap 705282 GTTGAGCGGCAAAAA TGAGC GTCG GCTCG TGGTGCCCATCTGCG Rpic_0665 706625 - 706053 - | putative type 4 fimbrial pilin related transmembrane protein Rpic_0666 707026 - 706622 - | putative type-4 frimbrial pilin-related signal peptide protein Rpic_0667 707814 - 707023 - | Tfp pilus assembly protein PilX-like protein Rpic_0668 708740 - 707808 - | putative transmembrane protein Rpic_0669 708942 - 708742 - | putative transmembrane protein TERM 589 709572 - 709586 + G 74 -10 -3.72742 | AGCTAATGGTGGTCT TGGCGA TTC TCGCCA TTCTCTTGGTGGTCG Rpic_0670 709385 - 710029 + | Tfp pilus assembly protein FimT-like protein Rpic_0671 710026 - 710529 + | type IV pilus modification protein PilV TERM 590 711533 - 711511 - g 73 -9.2 -3.88946 | opp_overlap 711513 CAGCCGACAGAAGAA TACGCTCG GTGTTTA CGAGCGTA ATTACGCTGCGCAAC Rpic_0672 710526 - 711560 + | type IV pilus assembly protein PilW Rpic_0673 711560 - 712129 + | hypothetical protein TERM 591 714438 - 714419 - g 75 -4.3 -4.65933 | opp_overlap 714422 GATCGTCAAAACAAA CAACGGA AGGTGG TCCGTTA TTGTGGCCAATGGTT Rpic_0674 712134 - 715502 + | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein Rpic_0675 715513 - 715872 + | hypothetical protein Rpic_0676 715869 - 716303 + | type IV pilin Rpic_0677 716813 - 716349 - | ATP-cone domain protein TERM 592 716732 - 716750 + g 71 -10.2 -3.62597 | ATTCGCAGCGACGGC GGCGGCGC ACG GTGTCGCC TTCTTCCGACATGCG TERM 593 716906 - 716865 - R 100 -15.9 -4.20868 | gap 1, overlap 716845 716866 GCGCTAAAAGAACAA CGCCGCGATG-GCCCCTCAT TCA ATTCGGGGCGCATCGCGGCA GGGTACTACGTGGCC TERM 594 716905 - 716866 - R 87 -17.2 -3.11798 | gap 1, overlap 716845 716865 CGCTAAAAGAACAAC GCCGCGATG-GCCCCTCAT TCA ATTCGGGGCGCATCGCGGC AGGGTACTACGTGGC Rpic_0678 718195 - 716948 - | Glycine hydroxymethyltransferase Rpic_0679 718596 - 719348 + | short-chain dehydrogenase/reductase SDR TERM 595 719554 - 719580 + G 75 -7.8 -4.30576 | overlap 719555 TTGGGGTCGACCAGC AGGCTCTGGCCG ACA CGACCGGGGCCA TTTTCGTGGTCCGCA Rpic_0680 719418 - 719822 + | tol-pal system-associated acyl-CoA thioesterase Rpic_0681 719819 - 720511 + | protein TolQ Rpic_0682 720524 - 720958 + | protein TolR Rpic_0683 720996 - 722024 + | protein TolA Rpic_0684 722091 - 723395 + | Tol-Pal system beta propeller repeat protein TolB Rpic_0685 723425 - 723946 + | peptidoglycan-associated lipoprotein TERM 596 723970 - 723995 + F 95 -16.1 -3.73068 | GTTTGAAGTGGAACG CGCCGGCTGCG AGGT TGCGGCCGGCG TTCTTACGTTGGCAA Rpic_0686 724015 - 724800 + | tol-pal system protein YbgF TERM 597 724829 - 724856 + F 100 -18.4 -5.14563 | opp_overlap 724829 CGGCATGTGAACGAA CGCCCGCCCGTG GCTG CACCGGCGGGCG TTTTTTCATGGACCG TERM 598 724856 - 724829 - f 95 -18.4 -3.35813 | opp_overlap 724829 CGGCATGTGAACGAA CGCCCGCCCGTG GCTG CACCGGCGGGCG TTTTTTCATGGACCG TERM 599 725546 - 725596 + G 72 -11.1 -3.53012 | gap 2, opp_overlap 725536 TACAAGGCCGACGAC GCCGGCC--GCGCTTGCGGCGTG TGCGATT CGTGCCGCATCCGCAAGGCCGGC TTTGAAGCCGCGGGC Rpic_0687 724964 - 725638 + | exsB protein Rpic_0688 725645 - 726760 + | protein of unknown function DUF395 YeeE/YedE TERM 600 726898 - 726921 + F 100 -14.6 -5.27938 | CCACCAAAATTCGCA GGGCTGACAG GCAA CTGTCGGCCC TTTTTGTTTGGCCGT Rpic_0689 727161 - 727931 + | Xylose isomerase domain protein TIM barrel TERM 601 728929 - 728907 - g 95 -15.6 -4.15222 | overlap 728868 AGGTGCTTGAACAAA CGGCCCGCAT GGC ATGCGAGCCG GAACCCATTTCCAAC Rpic_0690 727961 - 728950 + | PfkB domain protein Rpic_0691 729010 - 730290 + | major facilitator superfamily MFS_1 TERM 602 730874 - 730884 + G 76 -2.4 -4.90778 | CTCGACACGTTGCTG GCCG AAG CGGA TTTTGTTTGCCTGCA Rpic_0692 730295 - 731269 + | Gluconate 2-dehydrogenase Rpic_0693 731349 - 732413 + | transcriptional regulator, LacI family Rpic_0694 732410 - 732895 + | nucleoside 2-deoxyribosyltransferase TERM 603 733122 - 733108 - g 75 -3.5 -4.72272 | gap 1, opp_overlap 733094 733094, overlap 733084 733109 GCCGCGCACGAAAAA GCTGCG ATTT CGC-GC GCAGGTTTGCTGCCG Rpic_0695 732997 - 734169 + | Acyl-CoA dehydrogenase type 2 domain Rpic_0696 734259 - 735161 + | Taurine dioxygenase Rpic_0697 735634 - 735173 - | NUDIX hydrolase TERM 604 735530 - 735558 + g 87 -14.5 -3.65902 | overlap 735514 735513 CTCGCCCGGGTCGGG CGCGCCTTTGGGG ATG TCCCAGTGGCGCG TTTCAGTGGCGTGGG Rpic_0698 736445 - 735636 - | hypothetical protein Rpic_0699 737116 - 736442 - | ABC transporter related Rpic_0700 737427 - 737792 + | putative transmembrane protein TERM 605 737833 - 737817 - T 84 -11.5 -4.13654 | opp_overlap 737817 GCCGCAAATGAGAAA GGCCGGA TTG CCCGGCC TTTTCTTGCGGGCGC TERM 606 737817 - 737833 + T 89 -10.8 -4.63218 | opp_overlap 737817 GCCGCAAATGAGAAA GGCCGG ATTGC CCGGCC TTTTCTTGCGGGCGC Rpic_0701 738381 - 737854 - | hypothetical protein Rpic_0702 738755 - 738378 - | putative transmembrane protein TERM 607 738620 - 738635 + g 77 -5.4 -4.63592 | gap 1, opp_overlap 738618, overlap 738627 ACATGCCCAGGAAGG CGG-TGC CGA GCAGCCG TTCTTTTTCTTCAGC TERM 608 738627 - 738638 + g 79 -2.2 -5.06414 | opp_overlap 738618, overlap 738620 CAGGAAGGCGGTGCC GAGC AGCC GTTC TTTTTCTTCAGCCAG TERM 609 738883 - 738834 - R 100 -13.6 -4.16251 | gap 2, overlap 738839 ATAGAACCGCGAAAA TGCAACTGGCCGATGGCGCGATCC ATAG GGCGCGCGCCATCGGCCAG--GAA GGGTGCCGCGGGTTA TERM 610 738880 - 738839 - R 100 -25.9 -3.37091 | overlap 738834 ACCGCGAAAATGCAA CTGGCCGATGGCGCGATCC ATAG GGCGCGCGCCATCGGCCAG GAAGGGTGCCGCGGG Rpic_0703 739288 - 738896 - | protein of unknown function DUF883 ElaB Rpic_0704 739505 - 740143 + | Peroxidase TERM 611 740168 - 740188 + T 100 -15.4 -5.15969 | TGGTAGTGTGATTGC CGCCCGGC CTTGT GCCGGGCG TTTTTTGCGTTGGAG TERM 612 740259 - 740233 - T 100 -15.9 -5.48213 | gap 1, opp_overlap 740233 TAGGCAAAACAAAAA CCGGCCAG-CCC TTTC GGGTCTGGCCGG TTTGTCTTTTGTGGC TERM 613 740233 - 740259 + T 100 -15.9 -4.51238 | gap 1, opp_overlap 740233 TAGGCAAAACAAAAA CCGGCCAG-CCC TTTC GGGTCTGGCCGG TTTGTCTTTTGTGGC Rpic_0705 741673 - 740291 - | Xanthine/uracil/vitamin C permease Rpic_0706 743276 - 742083 - | acyl-CoA dehydrogenase domain protein Rpic_0707 743380 - 744204 + | transcriptional regulator, IclR family Rpic_0708 745051 - 744215 - | tryptophan 2,3-dioxygenase Rpic_0709 746345 - 745092 - | kynureninase Rpic_0710 747022 - 746393 - | arylformamidase TERM 614 746963 - 746951 - G 79 -10.5 -4.08064 | AATTTCCTGCGAAAA CGGCG TGT CGCCG GGCCACGTGGGCGTG Rpic_0711 747171 - 747698 + | transcriptional regulator, AsnC family Rpic_0712 747787 - 747993 + | hypothetical protein Rpic_0713 748584 - 748006 - | flavin reductase domain protein FMN-binding Rpic_0714 748766 - 749326 + | peptide methionine sulfoxide reductase Rpic_0715 750427 - 749342 - | protein of unknown function DUF72 TERM 615 749730 - 749682 - G 71 -10.2 -3.67775 | gap 2, overlap 749686 749714 AGGCCGACGCAATAA CGC-ACCCCCGCCGCGC-GCAGCA TCT TGATGAAGCGCGGCGTGAGCAGCG TGGCGTCGCGCAATT Rpic_0716 751652 - 750432 - | Cyclopropane-fatty-acyl-phospholipid synthase TERM 616 751813 - 751837 + r 79 -15.9 -2.79183 | overlap 751815 GTGCCGGCATGACGC GATGCGCAATA ACG TATTGCGCATC TGTCGTCAGGCTACG TERM 617 751815 - 751835 + r 70 -12.7 -2.94416 | overlap 751813 GCCGGCATGACGCGA TGCGCAATA ACG TATTGCGCA TCTGTCGTCAGGCTA Rpic_0717 752486 - 751848 - | pyridoxamine 5'-phosphate oxidase TERM 618 752508 - 752542 + H 71 -8.5 -4.00042 | gap 1, opp_overlap 752525 752531, overlap 752535 GGCGAATGCGGCATG CGGACGGGCCGAGTAT AGAC AAACACGGCCTG-CCG TTCTTTGCTCGCGCG TERM 619 752691 - 752673 - H 85 -6.8 -4.82901 | TGTTCCCCACAAAAA TTTCAACA GGA TGTCGAAA TGGCCCCCCGTTCCC Rpic_0718 752691 - 753176 + | putative transmembrane dehydrogenase (small subunit) oxidoreductase protein Rpic_0719 753176 - 754786 + | glucose-methanol-choline oxidoreductase Rpic_0720 754788 - 756071 + | Gluconate 2-dehydrogenase (acceptor) Rpic_0721 758390 - 756093 - | AsmA family protein TERM 620 756206 - 756221 + g 70 -6 -4.30177 | ATTTCAACTCGCCTT CCGGCG TGCG CCCCGG TTTCTTGCTGTGATA TERM 621 758383 - 758395 + g 75 -3.3 -4.78753 | overlap 758380 GCGAGTTTGCCGGAT GTACG CAT CGTCC TTTTGTTGGTATTGG Rpic_0722 758472 - 759374 + | UBA/THIF-type NAD/FAD binding protein Rpic_0723 759710 - 759387 - | Thioredoxin domain Rpic_0724 760224 - 759808 - | hemerythrin-like metal-binding protein TERM 622 760002 - 760051 + g 75 -4.1 -4.63218 | gap 1 GCACGTTGTCGTGCT CGCCGCGATGGCAGTGGCGCGG GGGAAAG TCG-GCCGCGTCCATCCAGGCG TTTTCTTCAGCGAAG Rpic_0725 760971 - 760306 - | DSBA oxidoreductase TERM 623 760644 - 760621 - G 75 -12.4 -3.54424 | overlap 760601 CTGGATCGCGTGAAA GACGGCGAGC ACGC GCTCGTCGTC CTCAGCCCAGTATTC Rpic_0726 761826 - 760981 - | thioredoxin TERM 624 763725 - 763706 - g 78 -12.8 -3.46482 | overlap 763718 AACGCAAGGAATGAA GCGGCCGA GAAA CCGGCCGC CGCGTAAGGAGCGCA Rpic_0727 762026 - 763732 + | AMP-dependent synthetase and ligase TERM 625 763773 - 763745 - T 78 -13.2 -3.17688 | opp_overlap 763751, overlap 763751 TAAGGAGCGCATCAA GAGAAAGGGGCC GGAGT GGCCCCTTTTTC AATGTCCGCGCGCCT TERM 626 763767 - 763751 - T 84 -10.8 -4.23674 | opp_overlap 763751, overlap 763745 GCGCATCAAGAGAAA GGGGCC GGAGT GGCCCC TTTTTCAATGTCCGC TERM 627 763751 - 763767 + T 95 -11.5 -4.70659 | opp_overlap 763751 763745 GCGCATCAAGAGAAA GGGGCCG GAG TGGCCCC TTTTTCAATGTCCGC Rpic_0728 764566 - 763772 - | Ankyrin TERM 628 763848 - 763818 - G 72 -11.1 -3.53811 | overlap 763798 763795 763819 CCGATGCCGTGGAAA CCACGCTGACGCG CATGC CGCATCGGCGTGA TGCCGCCGCGGTCGG TERM 629 764409 - 764425 + g 75 -12.3 -3.53091 | GTGTCCGCGGCGTGG GTCGCAC CGG GTGCGAC TTTCGCGCCGGCGCT Rpic_0729 765327 - 764578 - | ChaC family protein TERM 630 764880 - 764857 - G 70 -7.3 -3.96148 | opp_overlap 764856 764857 GCGGTTCATGACAAA GGCCAGCGC CAGGAC GCGTCGGCC GTTGATCTCGGTGGG Rpic_0730 765958 - 765605 - | peptidylprolyl isomerase FKBP-type TERM 631 765829 - 765839 + g 77 -8.2 -4.25104 | AATCGAACTTCTTGC CGGC CTG GCCG TTTTCGTAGAGCCAG Rpic_0731 766551 - 766000 - | YaeQ family protein TERM 632 766671 - 766692 + H 77 -7.9 -4.34402 | overlap 766672 CGGTATACGAGCGGT GCGTGCGCC AGTC GGCGCATGG TTTTCCTATCCAAAC TERM 633 766951 - 766894 - g 70 -14 -2.58544 | overlap 766893 CGGCACGGGCACAAC CGGCGCGGGGCAG-GGCCATGCGGCCGC GCAG GCAGCCGTGTCGCCGCCGCCC-GCGACG CTGCAGGAGCGTGTG Rpic_0732 766724 - 769585 + | hypothetical protein Rpic_0733 769582 - 770904 + | putative transmembrane protein TERM 634 770943 - 770925 - T 100 -13.1 -4.87133 | opp_overlap 770925 ATTGCCCAAAGAAAA CGGCGCC ACCTG GGCGCCG TTTCTTCCTGGCGGA TERM 635 770925 - 770943 + T 95 -13.1 -4.24342 | opp_overlap 770925 ATTGCCCAAAGAAAA CGGCGCC ACCTG GGCGCCG TTTCTTCCTGGCGGA Rpic_0734 771350 - 770967 - | putative transmembrane protein Rpic_0735 771659 - 771438 - | hypothetical protein Rpic_0736 772249 - 771686 - | YceI family protein TERM 636 772264 - 772292 + r 72 -13.2 -2.60075 | opp_overlap 772237 772234 772268, overlap 772263 772268 TGATGCCTCCGATAT CAGAGGCCCATG GCGCG CATGGGCCTGTG CTTACTTGCCCCAGC TERM 637 772268 - 772288 + r 70 -12.6 -2.96899 | opp_overlap 772237 772234 772268, overlap 772264 772263 GCCTCCGATATCAGA GGCCCATG GCGCG CATGGGCC TGTGCTTACTTGCCC TERM 638 772288 - 772268 - R 70 -12.6 -2.85351 | opp_overlap 772268 772264 772263, overlap 772237 772234 GCCTCCGATATCAGA GGCCCATG GCGCG CATGGGCC TGTGCTTACTTGCCC Rpic_0737 774024 - 772294 - | glutaminyl-tRNA synthetase Rpic_0738 775139 - 774087 - | lipase chaperone Rpic_0739 776168 - 775170 - | Triacylglycerol lipase TERM 639 776325 - 776307 - R 100 -11.7 -5.27335 | opp_overlap 776306 GTGCGCAAATAAAAA CCGGAGG GCGGG CCTCCGG CTTCGTAGGGTGCGA Rpic_0740 777861 - 776359 - | protein of unknown function DUF112 transmembrane TERM 640 776513 - 776483 - G 70 -7.6 -3.95621 | gap 1, opp_overlap 776479 776477, overlap 776474 ACGAAAGTGGAGAAA TCC-CCGCGCG AGAGCAGCAG CGCGCGGCGGA AGTTCTCTTCCATCA Rpic_0741 778339 - 777881 - | protein of unknown function DUF1468 TERM 641 778292 - 778280 - G 74 -10.5 -3.69354 | CGCCAGAATGGCAAA CGCCG CAC CGGCG ACGATGAACATGACG Rpic_0742 779053 - 778601 - | putative transmembrane protein TERM 642 779013 - 778996 - G 74 -2.7 -4.82901 | CGGCGGTGAGAAAAA CGATC AGCGTGAA GATCG AGATGTAATGCAGGT Rpic_0743 780319 - 779099 - | L-carnitine dehydratase/bile acid-inducible protein F Rpic_0744 780478 - 783144 + | alanyl-tRNA synthetase TERM 643 783174 - 783206 + F 100 -24.2 -4.86731 | gap 1, opp_overlap 783166 783165, overlap 783198 CAAGAATGCGCTAGA CGGCGCGCGCTCCCG GCAA CGGG-GCGCGCGCCG TTTTGTTTGGAGGCG Rpic_0745 783599 - 784714 + | purine nucleoside permease Rpic_0746 784711 - 785760 + | purine nucleoside permease TERM 644 785899 - 785924 + F 100 -11.1 -4.76963 | opp_overlap 785895, overlap 785895 785896 CAGCCAACGGATCGA CGCGCCGCG TGATGTTT TGCGGCGCG TTTTCTCTTCTCTCA Rpic_0747 785992 - 788100 + | TonB-dependent siderophore receptor TERM 645 788110 - 788121 + T 74 -7.2 -4.41348 | overlap 788108 CTGTGATGCGGGTCA GCCG CCGG CGGC TTTCTTTACCGCGCC Rpic_0748 788865 - 788107 - | band 7 protein Rpic_0749 790271 - 788877 - | protein of unknown function DUF107 TERM 646 789573 - 789605 + g 84 -14.7 -3.34013 | ACGCAGCGTGACGTC GCCGGCGGACGTGCG CAC CGCGCGGCCGTCGAC TTGCTTGAGCAGATC Rpic_0750 791254 - 790346 - | transcriptional regulator, LysR family TERM 647 792434 - 792458 + G 77 -12.7 -3.36515 | overlap 792424 GGCATCGGCCAGATC GCCGGGCCGCC GCT GGCGAACCGGC TGTTTGCGGCTACGG TERM 648 792490 - 792532 + G 73 -6.1 -4.35483 | opp_overlap 792488, overlap 792486 792492 CGGCTTCAATGCATC GCTGGCCGTGGCAGCCGTG TCGCT CATGGCCGGCGTGGTCATC TTTCTTGTGGTCAAG Rpic_0751 791357 - 792571 + | protein of unknown function DUF1228 Rpic_0752 792647 - 793432 + | class II aldolase/adducin family protein Rpic_0753 793488 - 793676 + | 4-oxalocrotonate tautomerase Rpic_0754 793711 - 794757 + | Threonine aldolase Rpic_0755 794772 - 795353 + | NUDIX hydrolase Rpic_0756 795401 - 795628 + | SirA family protein TERM 649 795646 - 795688 + T 100 -23.6 -3.53563 | opp_overlap 795647 795652, overlap 795647 795652 TGGCAGCGCGTTCAA AGAAAACGGGGCGATCCGGT TTG GCTGGATCGCCCCGTTTTCA TTTGGCGGCAGGTCT TERM 650 795687 - 795647 - T 100 -24.2 -3.53811 | opp_overlap 795646 795647 795652, overlap 795652 GGCAGCGCGTTCAAA GAAAACGGGGCGATCCGG TTTGG CTGGATCGCCCCGTTTTC ATTTGGCGGCAGGTC TERM 651 795647 - 795687 + T 100 -27.1 -2.71924 | opp_overlap 795647 795652, overlap 795646 795652 GGCAGCGCGTTCAAA GAAAACGGGGCGATCCGGT TTG GCTGGATCGCCCCGTTTTC ATTTGGCGGCAGGTC TERM 652 795682 - 795652 - T 100 -18.3 -4.86731 | opp_overlap 795647 795646 795652, overlap 795647 CGCGTTCAAAGAAAA CGGGGCGATCCGG TTTGG CTGGATCGCCCCG TTTTCATTTGGCGGC TERM 653 795652 - 795682 + T 100 -21.2 -4.54727 | opp_overlap 795652 795647, overlap 795647 795646 CGCGTTCAAAGAAAA CGGGGCGATCCGGT TTG GCTGGATCGCCCCG TTTTCATTTGGCGGC Rpic_0757 796589 - 795723 - | Lysine exporter protein (LYSE/YGGA) TERM 654 796868 - 796817 - g 88 -14.4 -3.85864 | gap 1 CGAGCAGTACAACAA TGGCGCCAGCACGCCC-ACCGCG TCGTTTG CGCTCTCGGGCAAGCTGGCGCCA GGCGCCGTCCATGTG TERM 655 797750 - 797720 - g 73 -9.6 -3.86897 | overlap 797700 GCCACTGCCGACAAA CGTGGCTCCGCC CGCGCAT GGCGCAGCCGCG CAGGCCGCGGCCAAT TERM 656 797917 - 797955 + G 71 -7.3 -4.18018 | opp_overlap 797906 797915 AAATGCGCTACAACG CCTG-GCGCCTGCAGCCCG TGC CGGGC-GCGGCTGCACCGG TTTTCAATGCCGCCG TERM 657 797998 - 798025 + G 80 -14.2 -3.35073 | overlap 797979 CCGGTGCACCTGTGC GCCACGCGCA GGCGGATG TGCGCGTGGC TTCGTTCAACGTACT Rpic_0758 796644 - 799100 + | Endonuclease/exonuclease/phosphatase Rpic_0759 799291 - 801747 + | multi-sensor hybrid histidine kinase Rpic_0760 801882 - 801757 - | hypothetical protein Rpic_0761 802086 - 802670 + | Fimbrial protein TERM 658 802787 - 802767 - g 70 -2.3 -4.6038 | opp_overlap 802781 802786, overlap 802761 802771 GATATGAAAGCAAAA CGATTCGCC GTT GGCGCGGCG TTGGCGTGCGCGTTG Rpic_0762 802755 - 803501 + | Pili assembly chaperone, N-terminal TERM 659 805512 - 805492 - g 81 -3.2 -5.08824 | overlap 805509 TCGCCAGCGAAAAAA CGTCTTAC GCCAT GCAAGCCG GTTATACCAACGGCG Rpic_0763 803619 - 806177 + | fimbrial biogenesis outer membrane usher protein TERM 660 806297 - 806317 + G 87 -6.1 -5.06816 | TCGGATCATCTTCTC CGCGGTT TCTGTAT GACCGCG TTTTTCTTGGCGGCT Rpic_0764 806255 - 806644 + | fimbrial protein TERM 661 806938 - 806951 + G 72 -3.1 -4.67755 | GGTGTTGGCACTTCG TTGGC GCCT GTCAA TTTTTCGATCAATCT Rpic_0765 806641 - 807270 + | Fimbrial protein TERM 662 807351 - 807375 + T 100 -12.7 -5.00884 | opp_overlap 807351 TGTACCAGCAAAAAA CCCCGCAGAGC CAA GCCCAGCGGGG TTTTTTGCCAAACGT TERM 663 807375 - 807351 - T 100 -14.9 -5.1861 | opp_overlap 807351 TGTACCAGCAAAAAA CCCCGCAGAGC CAA GCCCAGCGGGG TTTTTTGCCAAACGT Rpic_0766 811584 - 807802 - | protein of unknown function DUF748 TERM 664 808406 - 808387 - G 70 -11.4 -3.37796 | gap 1, overlap 808366 GGCCAGCAGCGAGAA CG-GCGCCG TCA CGGCGCGCG CGATGAGGTTGACGA Rpic_0767 812392 - 811703 - | phosphoglycolate phosphatase Rpic_0768 813120 - 812389 - | ubiquinone biosynthesis O-methyltransferase Rpic_0769 813266 - 813757 + | 17 kDa surface antigen TERM 665 813793 - 813777 - T 85 -9.4 -4.72272 | GGCGGTCATGAAAAA GGGGCA TCGGG TGCCCC AAACAGAAAAAGCGA TERM 666 813829 - 813805 - T 100 -8.5 -5.19879 | opp_overlap 813806, overlap 813806 CCCCAAACAGAAAAA GCGATGGCGCA TTT TGCGTCATCGT TTTTTTTGGCGCCTA TERM 667 813828 - 813806 - T 80 -12 -3.70843 | opp_overlap 813806, overlap 813805 CCCAAACAGAAAAAG CGATGGCGCA TTT TGCGTCATCG TTTTTTTTGGCGCCT TERM 668 813806 - 813828 + T 100 -14.2 -5.75945 | opp_overlap 813805 813806 CCCAAACAGAAAAAG CGATGGCGCA TTT TGCGTCATCG TTTTTTTTGGCGCCT TERM 669 813919 - 813902 - T 100 -12.7 -5.45726 | opp_overlap 813902 TACAGGCGAAAAAAA GCCCAGC GACA GCTGGGC TTTTTTCCGGTGTGA TERM 670 813902 - 813919 + T 100 -12.7 -5.07567 | opp_overlap 813902 TACAGGCGAAAAAAA GCCCAGC GACA GCTGGGC TTTTTTCCGGTGTGA Rpic_0770 814597 - 813941 - | OmpA/MotB domain protein TERM 671 816565 - 816585 + G 74 -11.1 -3.57263 | opp_overlap 816565 ATCATCGTCGAGGAA CTCACCGCG ATC CGCGCTGAG TTTGGCGATGAGCGT TERM 672 817210 - 817176 - g 75 -7.6 -4.25104 | GCGCTTCGATGAAAA CGACGTGCGCCCGATG GGT CGCCAGGCACGCGGCG TTCGCGGTATGAACC Rpic_0771 815029 - 817698 + | DNA gyrase, A subunit Rpic_0772 817827 - 818387 + | putative signal peptide protein TERM 673 818449 - 818478 + F 93 -6.3 -5.46706 | opp_overlap 818449 TCAGTTGGTAGATAA TGGCTGCTCGGGT TTGC GCCCAGACAGCCA TTTTTCTTTTGCCCT TERM 674 819046 - 819027 - g 73 -13.6 -2.86432 | overlap 819019 TTGAATATCAGGAGA CGCCTGAC GTCG GTCAGGCG CACGGGCGAGTGGTG TERM 675 819166 - 819145 - g 78 -4.4 -4.82901 | gap 1, overlap 819147 819148 CGGCGCGCAGAAAAA CATC-GGCC CTGCC GGCCTGACG ATTGCCATCGTCCGC Rpic_0773 818501 - 819637 + | phosphoserine aminotransferase TERM 676 819785 - 819757 - g 74 -5.2 -4.4773 | gap 1, overlap 819760 CGATACGAAGCAAAA CAAGGACG-CCGC GTTG GCGGCCGAGCTTG CGCCGTTGCGCACGC TERM 677 819778 - 819760 - g 78 -7.3 -4.34008 | overlap 819757 TACGAAGCAAAACAA GGACGCC GCGTT GGCGGCC GAGCTTGCGCCGTTG TERM 678 820259 - 820239 - g 72 -11.1 -3.53091 | overlap 820251 820252 820254 ACCTGTTTTTGCAAA CGTCGCTGA AAA TCAGCGGCG AGATCGCGCTGCGGG Rpic_0774 819725 - 820840 + | chorismate mutase TERM 679 820873 - 820850 - f 72 -12.4 -3.08133 | CATTGAGGGATTCAA GGCGCTCTGC ACGG GCAGAGCGTC GATAACGGAGGAGCA Rpic_0775 820893 - 822017 + | histidinol-phosphate aminotransferase Rpic_0776 822115 - 823023 + | Prephenate dehydrogenase Rpic_0777 823050 - 824354 + | 3-phosphoshikimate 1-carboxyvinyltransferase Rpic_0778 824382 - 825077 + | cytidylate kinase Rpic_0779 825213 - 826901 + | ribosomal protein S1 TERM 680 827089 - 827035 - g 81 -15.7 -3.02263 | gap 1 ATATCGCGGTTAAGA CGATCCTCGATGCGATGTCCG-ACGC CTTG GCGGACGGCCACCGCATCGAGATCCG CGGATTTGGCAGTTT TERM 681 827161 - 827188 + G 75 -12.1 -3.53012 | gap 1, opp_overlap 827160 827177 AGTCTGGCGAGAAGG TGCTGGTACCCG AAAAG CGGGTACC-GCA TTTCAAGGCCGGCAA TERM 682 827187 - 827177 - g 72 -8.2 -4.13767 | opp_overlap 827161, overlap 827160 GCTGGTACCCGAAAA GCGG GTA CCGC ATTTCAAGGCCGGCA Rpic_0780 826947 - 827375 + | integration host factor, beta subunit TERM 683 827405 - 827423 + F 100 -13.1 -5.63517 | opp_overlap 827405 TGGTAGTTTCAGGAA CGCCCCG CTTGC CGGGGCG TTTTTTGTTTAGGCA TERM 684 827423 - 827405 - f 74 -13.1 -3.15544 | opp_overlap 827405 TGGTAGTTTCAGGAA CGCCCCG CTTGC CGGGGCG TTTTTTGTTTAGGCA TERM 685 827521 - 827494 - f 76 -12.8 -3.31322 | overlap 827504 GTGAATCCGCTACAA TGCGGCACAACT CGGC AATCGTGCCGCA TCCGGCTGCTGCACC Rpic_0781 827558 - 827881 + | putative transmembrane protein Rpic_0782 827885 - 829159 + | Tetratricopeptide TPR_2 repeat protein TERM 686 829164 - 829202 + F 100 -10.9 -4.77986 | gap 1, opp_overlap 829164, overlap 829165 CCAGCATGTAATTCA GT-CCGGCGCGGCAGGTG TGTG CAACGGCCGCGCTGGCGC TTTTTCAATCTTTAA Rpic_0783 829226 - 830590 + | nucleotide sugar dehydrogenase Rpic_0784 830627 - 831559 + | rfaE bifunctional protein Rpic_0785 831578 - 832573 + | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 687 832680 - 832662 - f 74 -11.7 -3.55548 | opp_overlap 832662 TAAGATGTGTCGAAA CCGCCAC CTCAT GTGGCGG TTTTTTCATCCCAAC TERM 688 832662 - 832680 + F 100 -11.7 -5.14563 | opp_overlap 832662 TAAGATGTGTCGAAA CCGCCAC CTCAT GTGGCGG TTTTTTCATCCCAAC Rpic_0786 832711 - 833034 + | putative ComEA-related signal peptide protein TERM 689 833059 - 833079 + F 100 -16.9 -4.16943 | opp_overlap 833035 833059 TCATGCTGCCGACAA CGCCTCGCT CTG AGCGAGGCG TTTTGCCATGTGCGA TERM 690 833079 - 833059 - f 93 -16.9 -3.29144 | opp_overlap 833059, overlap 833035 TCATGCTGCCGACAA CGCCTCGCT CTG AGCGAGGCG TTTTGCCATGTGCGA Rpic_0787 833147 - 834049 + | cysteine synthase B TERM 691 834070 - 834099 + T 95 -13.7 -4.03234 | opp_overlap 834076, overlap 834076 CGCCGCATCGCCATG AAAAAAGCGCAGC TTCG GCTGCGCTTTTTG TTTGTGTGGACGGCG TERM 692 834093 - 834076 - T 100 -12.7 -5.14965 | opp_overlap 834070 834076 ATCGCCATGAAAAAA GCGCAGC TTCG GCTGCGC TTTTTGTTTGTGTGG TERM 693 834076 - 834093 + T 100 -12.7 -5.42975 | opp_overlap 834076, overlap 834070 ATCGCCATGAAAAAA GCGCAGC TTCG GCTGCGC TTTTTGTTTGTGTGG Rpic_0788 835241 - 834117 - | lytic murein transglycosylase B Rpic_0789 835373 - 836296 + | histone deacetylase superfamily TERM 694 836448 - 836413 - f 100 -7.5 -5.65927 | opp_overlap 836417, overlap 836415 836417 CATTCAAACAAAAAA GAGACGGCAACGGCC TAAATG GGCGGTTGCCGTTTT TGTCTGTACGCATGA TERM 695 836446 - 836415 - f 89 -10.1 -4.45696 | opp_overlap 836417, overlap 836413 836417 TTCAAACAAAAAAGA GACGGCAACGGCC TAAATG GGCGGTTGCCGTT TTTGTCTGTACGCAT TERM 696 836444 - 836417 - f 85 -12.7 -3.80772 | opp_overlap 836417, overlap 836415 836413 CAAACAAAAAAGAGA CGGCAACGGCC TAAATG GGCGGTTGCCG TTTTTGTCTGTACGC TERM 697 836417 - 836444 + F 100 -13.4 -5.03994 | opp_overlap 836417 836415 836413 CAAACAAAAAAGAGA CGGCAACGGCCT AAAT GGGCGGTTGCCG TTTTTGTCTGTACGC TERM 698 836927 - 836901 - g 70 -13.6 -2.57132 | opp_overlap 836920, overlap 836900 836903 TCCGGTGGCCAGAAG CAGCGCGTTGGC ATT GCCCGCGCGCTG GCGAGCCAGCCCGAT Rpic_0790 836460 - 837509 + | ABC transporter related Rpic_0791 837499 - 838152 + | binding-protein-dependent transport systems inner membrane component Rpic_0792 838186 - 838986 + | lipoprotein, YaeC family TERM 699 838975 - 838990 + F 84 -9 -4.4767 | AAAGATGCGGTGATT GTGGCT TGGT AGCCAC TTTTGTGATCCGTAG TERM 700 839035 - 839065 + F 79 -9.7 -4.14392 | opp_overlap 839034 839032 839036, overlap 839036 GGTTCTACCAAACAG ATTGCCGGACGTT TGACT GGCGTCCGGCAAA TTTTCGCGGTTAAAA TERM 701 839064 - 839036 - f 72 -11.8 -3.29704 | opp_overlap 839036 839035, overlap 839034 839032 GTTCTACCAAACAGA TTGCCGGACG TTTGACTGG CGTCCGGCAA ATTTTCGCGGTTAAA TERM 702 839036 - 839064 + F 76 -13.2 -3.08314 | opp_overlap 839034 839032 839036, overlap 839035 GTTCTACCAAACAGA TTGCCGGACGTT TGACT GGCGTCCGGCAA ATTTTCGCGGTTAAA Rpic_0793 839177 - 839926 + | Electron transfer flavoprotein alpha/beta-subunit Rpic_0794 839978 - 840913 + | Electron transfer flavoprotein alpha subunit TERM 703 840992 - 840966 - f 77 -10.9 -3.65199 | opp_overlap 840966 AATGCCCGACGCAAA GCCGTTTCCGA CCTGT TTGGAAACGGC TTTTTTATACGCGAG TERM 704 840966 - 840992 + F 100 -13.1 -5.24129 | opp_overlap 840966 AATGCCCGACGCAAA GCCGTTTCCGA CCTGT TTGGAAACGGC TTTTTTATACGCGAG Rpic_0795 841082 - 842866 + | acyl-CoA dehydrogenase domain protein TERM 705 842891 - 842908 + T 100 -12.7 -5.26316 | opp_overlap 842891 GCCGGAAAAAAAAAA GGGAGGC TCCT GCCTCCC TTTTTTATCGCATGC TERM 706 842908 - 842891 - T 100 -12.7 -6.34424 | opp_overlap 842891 GCCGGAAAAAAAAAA GGGAGGC TCCT GCCTCCC TTTTTTATCGCATGC Rpic_0796 844224 - 842935 - | D-amino-acid dehydrogenase Rpic_0797 844347 - 844844 + | transcriptional regulator, AsnC family Rpic_0798 844909 - 846528 + | Alkaline phosphatase Rpic_0799 846611 - 847735 + | Radical SAM domain protein Rpic_0800 848191 - 847736 - | putative transmembrane protein Rpic_0801 848555 - 848382 - | putative transmembrane protein Rpic_0802 849069 - 848680 - | putative signal peptide protein Rpic_0804 850482 - 850736 + | ribosomal protein S16 Rpic_0805 850870 - 851424 + | 16S rRNA processing protein RimM Rpic_0806 851448 - 852236 + | tRNA (guanine-N1)-methyltransferase TERM 707 852321 - 852309 - f 84 -6.3 -4.98255 | GGTCAAGGAGAAAAA GATGA ATC TCATC GAGCAAATCGAGCAG Rpic_0807 852310 - 852696 + | ribosomal protein L19 TERM 708 852716 - 852731 + F 100 -10.4 -5.5208 | opp_overlap 852716, overlap 852709 CGCGCGTTGCGAAAA GGCACC TTCG GGTGCC TTTTTTCTCTTCTGC TERM 709 852731 - 852716 - f 80 -10.4 -4.07568 | opp_overlap 852709 852716 CGCGCGTTGCGAAAA GGCACC TTCG GGTGCC TTTTTTCTCTTCTGC TERM 710 853311 - 853321 + G 74 -2.4 -4.7497 | CGGAGGTGTTTGAAG TGCC GCT GGCC TTTTTGATGGATCCG Rpic_0808 852803 - 853507 + | NUDIX hydrolase TERM 711 854190 - 854202 + G 74 -2.6 -4.77036 | CGCGCTAGGTCTCTT TGCC CGTCA GGCG TTTTTCATCATCGAC Rpic_0809 853615 - 854556 + | cobalamin biosynthesis protein CbiB Rpic_0810 854903 - 854589 - | hypothetical protein Rpic_0811 855881 - 854934 - | ribosome small subunit-dependent GTPase A TERM 712 855367 - 855406 + g 73 -12 -3.34344 | gap 1, overlap 855368 CCAGCGACGTGCGGT TCGAGCGCGGCATGCGCGG CTT CCG-GCGCGCCGTGCACGG TTAGTTCCACGATGG Rpic_0812 857137 - 855878 - | Ste24 endopeptidase Rpic_0813 857202 - 857861 + | Exonuclease RNase T and DNA polymerase III Rpic_0814 858516 - 857869 - | molybdenum cofactor synthesis domain protein Rpic_0815 859139 - 858513 - | protein of unknown function DUF615 TERM 713 859906 - 859919 + G 73 -9.5 -3.85698 | opp_overlap 859896 AAGTACGCGGCGGAA CGCGC GCTG GCGCG TTTGTCCGCGCGCCG Rpic_0816 859213 - 860586 + | peptidase U62 modulator of DNA gyrase TERM 714 860630 - 860611 - T 100 -10.7 -5.95539 | opp_overlap 860611 GCGGAAATAAAAAAA CGCGCTC GAAACT GAGCGCG TTTTTTATTGCCTGC TERM 715 860611 - 860630 + T 100 -11.4 -5.4833 | opp_overlap 860611 GCGGAAATAAAAAAA CGCGCTCG AAAC TGAGCGCG TTTTTTATTGCCTGC Rpic_0817 861154 - 860651 - | Dihydrofolate reductase Rpic_0818 861953 - 861159 - | Thymidylate synthase Rpic_0819 862169 - 863170 + | Pyridoxal-5'-phosphate-dependent protein beta subunit Rpic_0820 863859 - 863167 - | Integral membrane protein TerC TERM 716 864005 - 863956 - H 93 -16.5 -3.5394 | gap 1, opp_overlap 863923 863959 AAATCCGGTTGCAAA GGTCTTGCTCGACACGCGCAGGTT GTG AACCTGCTGGTGCCG-GCACGACC GGAAGCTTGCGCTTC TERM 717 864137 - 864151 + H 77 -3.4 -5.00884 | opp_overlap 864119 864127 864126, overlap 864127 864138 AACATCGGCACGATG ACGTGC TGT GCGCGG TTTTTTCAGCGGCGT Rpic_0821 864301 - 865422 + | hypothetical protein Rpic_0822 865490 - 866788 + | protein of unknown function DUF323 TERM 718 866855 - 866876 + T 89 -5.1 -5.26316 | gap 1, opp_overlap 866856, overlap 866856 CGCCCAAACAAAAAA ACCCACG-CT GTT AGACGTGGGG TTTTTTGTAGGCTGC TERM 719 866875 - 866856 - T 100 -8.6 -5.95539 | gap 1, opp_overlap 866856 866855 GCCCAAACAAAAAAA CCCACG-CT GTT AGACGTGGG GTTTTTTGTAGGCTG Rpic_0823 868811 - 866928 - | DEAD/DEAH box helicase domain protein TERM 720 867127 - 867106 - G 70 -11.5 -3.31144 | opp_overlap 867115 867125 TCGCGATTGCCATAA CCGCCACCG TTGC CGGTGCCGG CGCTGTTGCCGTAGC Rpic_0824 869311 - 869499 + | putative transmembrane protein TERM 721 869521 - 869554 + F 74 -6.7 -4.36914 | gap 1, overlap 869523 869524 869526 CGGGGCCATCCGCAG CCAT-AGGCCCGCC CGCGTGT GGCGGGCCTCGTTG TTTTGTGCGGGCAAG TERM 722 869523 - 869551 + F 74 -7.3 -4.30995 | overlap 869521 869524 869526 GGGCCATCCGCAGCC ATAGGCCCGCC CGCGTGT GGCGGGCCTCG TTGTTTTGTGCGGGC TERM 723 869526 - 869548 + F 78 -13.4 -3.14625 | overlap 869524 869523 869521 CCATCCGCAGCCATA GGCCCGCC CGCGTGT GGCGGGCC TCGTTGTTTTGTGCG TERM 724 869598 - 869580 - f 100 -11.7 -5.29716 | opp_overlap 869580 GCAAGAGAACAAAAA GCCAGGC GTGCA GCCTGGC TTTGTCGTATCTGCT TERM 725 869580 - 869598 + F 84 -11.7 -4.04719 | opp_overlap 869580 GCAAGAGAACAAAAA GCCAGGC GTGCA GCCTGGC TTTGTCGTATCTGCT Rpic_0825 870000 - 870215 + | hypothetical protein TERM 726 870273 - 870251 - T 100 -12.7 -5.38958 | opp_overlap 870253 870268, overlap 870217 ATGCACAAACAAAAA CACCGCCGT GCGTG ACGGCGGCG CTCATGCTGCGTGCG Rpic_0826 871204 - 870296 - | extracellular solute-binding protein family 3 TERM 727 871000 - 871022 + g 84 -6.8 -4.84359 | opp_overlap 871002, overlap 871002 CCACGCGCAGGCACA GATCGACGGC ATA GCCGACGGGC TTTTTATCGGCGTCG TERM 728 871264 - 871314 + r 93 -6.7 -5.30189 | gap 1, opp_overlap 871284, overlap 871263 871266 871268 GCCCGGCTCGTGGCC GGA-GGGCCTGCCGCATGATACGG CCCG CCGCAGCAAGCTGCAGGCCTGTGC TTTTTTGGTGTTGTA TERM 729 871268 - 871309 + r 82 -14.3 -3.26783 | opp_overlap 871284, overlap 871266 871263 871264 GGCTCGTGGCCGGAG GGCCTGCCGCATGATACGG CCCG CCGCAGCAAGCTGCAGGCC TGTGCTTTTTTGGTG TERM 730 871511 - 871526 + r 70 -3.2 -4.65895 | overlap 871512 TGCGAAGCCGCACCG GGCCTA GCGT TAGGCG TTTTTCCCTACCGGG TERM 731 871624 - 871644 + r 100 -15.4 -4.87133 | opp_overlap 871618, overlap 871633 GAGGAGAGACTCTTC CGGCCCGC CGAAA GCGGGCCG TTTTCTTTGGCGCCT Rpic_0827 871883 - 871677 - | putative transmembrane protein TERM 732 873779 - 873753 - g 86 -13 -3.92641 | AAGCTCAGCTACAAA GAGCAGCGCG AACTCGA CGCGCTGCCC GCCACTATCGAGGCG Rpic_0828 872058 - 873968 + | ABC transporter related Rpic_0829 874141 - 876126 + | DNA topoisomerase (ATP-hydrolyzing) Rpic_0830 876143 - 877033 + | Lytic transglycosylase catalytic TERM 733 877039 - 877066 + F 71 -9 -3.77666 | gap 1, overlap 877052 TCAACATTGATCCTG GCGGCGCCGCAAC GTT GAAGC-GCGCCGC TTTCGCTTGAGTCTC Rpic_0831 877083 - 879425 + | DNA topoisomerase IV, A subunit Rpic_0832 879430 - 880008 + | Chromate transporter Rpic_0833 880005 - 880535 + | Chromate transporter TERM 734 880583 - 880566 - f 76 -12.7 -3.27525 | opp_overlap 880566, overlap 880561 GCCTGCGAAATCCAA GGCGGAC GCAT GTCCGCC TTTTTTCTTGGCCCG TERM 735 880566 - 880583 + F 100 -12.7 -5.4505 | opp_overlap 880566 880561 GCCTGCGAAATCCAA GGCGGAC GCAT GTCCGCC TTTTTTCTTGGCCCG TERM 736 880828 - 880849 + G 75 -6.5 -4.38712 | gap 1 CGCTTTCTCGCGCTC GGTTCG-GCC ATC GGCACGGGCC TTTTCTACGGGTCCG Rpic_0834 880774 - 882156 + | amino acid permease-associated region TERM 737 882168 - 882141 - f 76 -14.1 -3.01712 | overlap 882146 CGTTCTGGCTGAAGA GGCAAGCGGGG TGTGAG CCCCGCCCGCC CGCAAAGACAAGACA Rpic_0835 882201 - 883520 + | major facilitator superfamily MFS_1 Rpic_0836 885356 - 883524 - | ABC transporter related TERM 738 885125 - 885093 - G 81 -12 -3.88291 | gap 1 GATCAGCGCCACAAA GGCCATCCACAGCAG TTCG CTGCGGTGG-CGGCC GAAGAACTCCGCGCC TERM 739 885620 - 885677 + r 81 -6.1 -4.75372 | TGGTTGGAGCTCAGA GCTCGGCGCGTGGGGCTTTTTGCTC GGTGGTTG GAGCTCAGAGCTCGGCGCGTGGGGC TTTTTGCTCGGTGGT TERM 740 885851 - 885868 + r 82 -12.7 -3.6715 | opp_overlap 885851 CGCGCCATGAAAAAA GCCGCTC GATT GAGCGGC TTTCGGGTTCCGTCG TERM 741 885868 - 885851 - R 100 -12.7 -5.14563 | opp_overlap 885851 CGCGCCATGAAAAAA GCCGCTC GATT GAGCGGC TTTCGGGTTCCGTCG Rpic_0837 887570 - 885894 - | L-lactate transport TERM 742 887293 - 887273 - G 75 -14.1 -3.02511 | overlap 887258 TCGAGCTCTGCAAGA CCTTGAACG ACC CGTTCAAGG TGGTGAGCCGGTGCA TERM 743 887430 - 887412 - G 75 -6.6 -4.33928 | CATGCCAAACACAAA CGAGGCGA TCC CCACCCCG ACAATCAGCGCCAGG Rpic_0838 887832 - 889835 + | Patatin Rpic_0839 889798 - 890604 + | transposase IS4 family protein Rpic_0840 890647 - 891054 + | patatin Rpic_0841 891225 - 892406 + | efflux transporter, RND family, MFP subunit TERM 744 893012 - 892954 - g 71 -13.1 -3.04144 | gap 2 GTTCGATGCGGAATA CGCCATGCGCATCTGGCCCGATGCCGACA AGC TGACCGCATTGGGCCTGAC-CGC-CGGCG ACCTGAGCGACGCCG Rpic_0842 892409 - 895564 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Rpic_0843 896401 - 895577 - | hypothetical protein Rpic_0844 897684 - 896398 - | putative PAS/PAC sensor protein TERM 745 897739 - 897713 - R 100 -13 -5.79595 | gap 1, opp_overlap 897713 897737 GGTGAAAACAAAAAA CCGCGC-CGGC GTAGGT GCCGTGCGCGG TTGATGATGCTATCG TERM 746 897713 - 897739 + r 78 -13.7 -3.24188 | gap 1, opp_overlap 897713, overlap 897737 GGTGAAAACAAAAAA CCGCGC-CGGCG TAGG TGCCGTGCGCGG TTGATGATGCTATCG Rpic_0845 898415 - 897774 - | Glutathione S-transferase domain Rpic_0846 899653 - 898463 - | putative transcriptional regulator, GntR family Rpic_0847 900255 - 899785 - | Endoribonuclease L-PSP Rpic_0848 901239 - 900301 - | protein of unknown function DUF6 transmembrane Rpic_0849 901968 - 901249 - | Threonyl/alanyl tRNA synthetase SAD Rpic_0850 902100 - 903578 + | transcriptional regulator, GntR family with aminotransferase domain Rpic_0851 903670 - 905601 + | heat shock protein Hsp90 Rpic_0852 905610 - 906113 + | Uracil-DNA glycosylase superfamily Rpic_0853 906675 - 906253 - | hypothetical protein Rpic_0854 907500 - 906745 - | extracellular solute-binding protein family 3 Rpic_0855 908155 - 909138 + | beta-lactamase domain protein Rpic_0856 909221 - 909634 + | G:T/U mismatch-specific DNA glycosylase Rpic_0857 910444 - 909713 - | methyl-accepting chemotaxis protein TERM 747 909772 - 909794 + g 76 -14.1 -3.14132 | ATGGCCGGCGCGTGC CGGCGCCGG ACTGG CCGGCGTCG TTCGTGCCGACGACA TERM 748 910559 - 910501 - H 100 -10.4 -5.93809 | gap 4, overlap 910502 CGGCCAGAAAAAAAA CGCCCCGAAGCGAGACGGCGACG-CACCGG TTG CCGGGGACGT-GCCGTGTCGCCTC-GGA-G CGCCGTTGCCCCGGA TERM 749 910560 - 910502 - H 100 -24.7 -4.15201 | opp_overlap 910559, overlap 910501 GGCCAGAAAAAAAAC GCCCCGAAGCGAGACGGCGACG-CACCGG TTG CCGGGGACGT-GCCGTGTCGCCTCGGAGC GCCGTTGCCCCGGAC Rpic_0858 910878 - 911387 + | hypothetical protein Rpic_0859 911564 - 912322 + | Tetratricopeptide TPR_4 Rpic_0860 912331 - 913206 + | hypothetical protein TERM 750 913229 - 913258 + T 100 -14.4 -4.86731 | gap 1, opp_overlap 913235 TGCGCGCCGTCCCAT GCAAAACGCCCCG ATTTG CGGGGCGTTT-GC TTTTGTTTGGAGGCG TERM 751 913253 - 913235 - T 95 -13.1 -4.18018 | opp_overlap 913229 CCGTCCCATGCAAAA CGCCCCG ATTTG CGGGGCG TTTGCTTTTGTTTGG Rpic_0861 913675 - 913277 - | hypothetical protein Rpic_0862 914999 - 913824 - | hypothetical protein Rpic_0863 915623 - 915015 - | hypothetical protein Rpic_0864 916530 - 915637 - | AAA ATPase central domain protein Rpic_0865 916831 - 917199 + | cytochrome c class I Rpic_0866 917211 - 917609 + | putative periplasmic cytochrome type-C oxidoreductase signal peptide protein TERM 752 917635 - 917650 + T 100 -10.4 -5.4756 | opp_overlap 917635 CCGGTCAAAAAAAAA CCGCTC TTCG GAGCGG TTTTTTGTTGGCGTT TERM 753 917650 - 917635 - T 100 -10.4 -6.06723 | opp_overlap 917635 CCGGTCAAAAAAAAA CCGCTC TTCG GAGCGG TTTTTTGTTGGCGTT Rpic_0867 918112 - 917678 - | Domain of unknown function DUF1841 Rpic_0868 918231 - 919166 + | protein of unknown function DUF6 transmembrane TERM 754 919189 - 919220 + T 70 -13.1 -2.981 | opp_overlap 919194, overlap 919194 TCCTCACGCGCAACA AAAAACCGCCCAG CGTGAA CTGGGCGGTTTTG CTTTCTGCCTTGAGG TERM 755 919215 - 919194 - T 100 -13.7 -5.45652 | opp_overlap 919189 919194 ACGCGCAACAAAAAA CCGCCCAGC GTGA ACTGGGCGG TTTTGCTTTCTGCCT TERM 756 919194 - 919215 + T 100 -13 -4.62475 | opp_overlap 919194, overlap 919189 ACGCGCAACAAAAAA CCGCCCAG CGTGAA CTGGGCGG TTTTGCTTTCTGCCT Rpic_0869 921083 - 919239 - | peptidase S10 serine carboxypeptidase TERM 757 919395 - 919407 + g 75 -4.1 -4.66833 | GCCCGACGGGTAATT CTTGA TCG TCAGG TTTTTCGCCTTGAGC Rpic_0870 921649 - 922236 + | nitroreductase TERM 758 922297 - 922257 - T 70 -10.6 -3.53012 | gap 1, opp_overlap 922262, overlap 922262 GGTCGGTCGCGCAAA GAAAACGGGGACT-CGC ATCAGACG GCGCAGTCCCCGTTTTT TATTCCTTCGGCGCT TERM 759 922262 - 922292 + T 100 -10.5 -5.5604 | gap 1, opp_overlap 922262 922257 GTCGCGCAAAGAAAA CGGGGACT-CGC ATCAGACG GCGCAGTCCCCG TTTTTTATTCCTTCG TERM 760 922292 - 922262 - T 100 -10.5 -4.86731 | gap 1, opp_overlap 922262, overlap 922257 GTCGCGCAAAGAAAA CGGGGACT-CGC ATCAGACG GCGCAGTCCCCG TTTTTTATTCCTTCG Rpic_0871 922941 - 922297 - | endonuclease III Rpic_0872 923786 - 922956 - | electron transport complex, RnfABCDGE type, B subunit Rpic_0873 923927 - 924622 + | transcriptional regulator, TetR family TERM 761 924670 - 924653 - T 100 -12.7 -5.55769 | opp_overlap 924653 TCGCACAACAAAAAA GCCTCGC GGTT GCGAGGC TTTTTCTTGGGGGCT TERM 762 924653 - 924670 + T 100 -12.7 -5.06816 | opp_overlap 924653 TCGCACAACAAAAAA GCCTCGC GGTT GCGAGGC TTTTTCTTGGGGGCT Rpic_0874 925963 - 924692 - | polyhydroxyalkanoate depolymerase, intracellular TERM 763 926106 - 926129 + r 85 -9.6 -4.66833 | opp_overlap 926111, overlap 926111 TATTCCGATGCAGCA AAAAAGCGGC CGAA GCCGCTTTTC TTTTTGCAATTGCAC TERM 764 926124 - 926111 - R 100 -9.5 -5.1675 | opp_overlap 926106 926111 CGATGCAGCAAAAAA GCGGC CGAA GCCGC TTTTCTTTTTGCAAT TERM 765 926111 - 926124 + r 100 -9.5 -5.27023 | opp_overlap 926111, overlap 926106 CGATGCAGCAAAAAA GCGGC CGAA GCCGC TTTTCTTTTTGCAAT Rpic_0875 927366 - 926170 - | Aspartate transaminase TERM 766 927376 - 927360 - G 70 -5.1 -4.37886 | opp_overlap 927373, overlap 927362 CGACGGCGGAGAAAA GCGACAT GAG ATGTCTC GATCGGTTGGTTCGG Rpic_0876 927703 - 929793 + | excinuclease ABC, B subunit TERM 767 930683 - 930701 + G 75 -6.6 -4.37092 | overlap 930678 AACGGCCCGACACGG CGCTTGCG AGC CCCGAGCG TTTTGTGCAGGAACT TERM 768 931436 - 931461 + G 72 -6.9 -4.23892 | gap 1, opp_overlap 931440, overlap 931442 ATCTGATCTCGGCAG CGAAGGCGATGG CGA CCATCGA-TTCG TTTTCGATCCTTGGG Rpic_0877 929968 - 932052 + | putative site-specific recombinase transmembrane protein Rpic_0878 933014 - 932049 - | ribokinase Rpic_0879 934092 - 933052 - | transcriptional regulator, LacI family TERM 769 933723 - 933750 + g 72 -3.4 -4.65895 | gap 1, opp_overlap 933706 CCGTGTCTGGCCCGG CGCTGCTGACG ATGATGC CGTCAAC-GCG TTTTTCCATCAGCAC Rpic_0880 935118 - 934111 - | Monosaccharide-transporting ATPase Rpic_0881 936688 - 935108 - | ABC transporter related TERM 770 936094 - 936144 + g 84 -13.3 -3.73224 | opp_overlap 936094, overlap 936095 GAGAGATGTAGATGA TCGCCACGC-CTTCGCGGCGCAGCG CGT CGATGCGCT-CGAACAGCGTGGCGC TTTCGTGCGCGCTCA TERM 771 936095 - 936143 + g 84 -16.8 -2.8372 | opp_overlap 936094, overlap 936094 AGAGATGTAGATGAT CGCCACGC-CTTCGCGGCGCAGCG CGT CGATGCGCT-CGAACAGCGTGGCG CTTTCGTGCGCGCTC Rpic_0882 937677 - 936718 - | periplasmic binding protein/LacI transcriptional regulator Rpic_0883 938101 - 938694 + | transcriptional regulator, BadM/Rrf2 family TERM 772 939307 - 939290 - g 76 -5.5 -4.56775 | overlap 939292 ATCTGCCGCGAAAAA GGCGTGA TTTT TCACGTC GATGCCGCGCAGGCT Rpic_0884 938768 - 939985 + | cysteine desulfurase IscS TERM 773 940432 - 940416 - g 74 -5 -4.51174 | opp_overlap 940423 940424 CGACTACAAGGAAAA GCACGG TTCGG CCGAGC AGAAGGCTGCTTGAG Rpic_0885 940045 - 940446 + | FeS cluster assembly scaffold IscU Rpic_0886 940473 - 940793 + | iron-sulfur cluster assembly protein IscA Rpic_0887 940804 - 941004 + | hypothetical protein TERM 774 941025 - 941037 + F 100 -10.5 -5.84381 | opp_overlap 941024 ACGAAGGAACACTAG GCGGC GCA GCCGC TTTTTTTATTCATGA TERM 775 941472 - 941448 - g 78 -3.5 -4.8622 | gap 1 CTGCGCAAGGAAAAA CGCAC-GCGC TATCAG GCGCTGTCCG GTCTGCTCAATAGCG Rpic_0888 941049 - 941588 + | co-chaperone Hsc20 Rpic_0889 941658 - 943523 + | Fe-S protein assembly chaperone HscA Rpic_0890 943570 - 943908 + | ferredoxin, 2Fe-2S type, ISC system TERM 776 943924 - 943902 - f 77 -7.7 -4.42238 | gap 1 CCACGCCAAGGAAAA CCACTGAGCC GAGT GGC-CAGCGG TGGAGGGAGCCCATC TERM 777 944110 - 944090 - g 71 -4 -4.56597 | overlap 944103 CGTGGCGGCGAAAAA TTTCTGGA AGCCA TCCAGCAA GCCTGGATCGAAGAA Rpic_0891 943940 - 944134 + | FeS assembly protein IscX TERM 778 944162 - 944189 + T 89 -12.8 -4.07568 | opp_overlap 944168, overlap 944168 AAACGCGTATGCATG AAAAAACCGGCC CGAA GGCCGGTTTTTC TTTTGGGGCGAAGGC TERM 779 944168 - 944183 + T 100 -11.8 -5.45802 | opp_overlap 944168, overlap 944162 GTATGCATGAAAAAA CCGGCC CGAA GGCCGG TTTTTCTTTTGGGGC TERM 780 944183 - 944168 - T 100 -11.8 -5.1675 | opp_overlap 944168 944162 GTATGCATGAAAAAA CCGGCC CGAA GGCCGG TTTTTCTTTTGGGGC Rpic_0892 944957 - 944214 - | 17 kDa surface antigen TERM 781 945189 - 945174 - R 100 -11.8 -5.4505 | opp_overlap 945174 GCGCGCAACAAAAAA CGCCCC CGAA GGGGCG TTCTTTCCAAGGCGA TERM 782 945174 - 945189 + r 82 -11.8 -3.90744 | opp_overlap 945174 GCGCGCAACAAAAAA CGCCCC CGAA GGGGCG TTCTTTCCAAGGCGA Rpic_0893 946763 - 945219 - | lysyl-tRNA synthetase Rpic_0894 947528 - 946788 - | short-chain dehydrogenase/reductase SDR TERM 783 947100 - 947067 - G 75 -13.8 -3.01712 | gap 1 CTTGCCGGTGCAATA CGCCGCCCAGCCGGC GATCG GCCGGC-GCGCAGCG CCCGACGAGATCGCC Rpic_0895 948658 - 947554 - | hypothetical protein TERM 784 948026 - 948004 - G 72 -11.2 -3.44206 | opp_overlap 948021 948022, overlap 947995 GAAGATCGACGAGAA CGACGTGTGG CGG CCACCCGCCG AGTCGAACGGCGATT TERM 785 948477 - 948498 + g 77 -12.3 -3.63895 | gap 1 CAAGCGACTTCTTCT CGCGGCCCAG CTC CTGGGC-GCG TTTGGGATCGTTCCA TERM 786 948685 - 948669 - H 85 -8.7 -4.58395 | opp_overlap 948668 TCCATGGTGCAAAAA TCCGGTC GGA AACCGGA AATTATAGCGGAATC TERM 787 949342 - 949356 + G 71 -4.2 -4.58283 | overlap 949341 CCGCATTGCCGACTA CGGC ACCCGCC GCCG TTTTTCGCACACTTG Rpic_0896 948839 - 950008 + | nicotinate phosphoribosyltransferase Rpic_0897 950098 - 950817 + | protein of unknown function DUF162 Rpic_0898 950957 - 952366 + | putative transmembrane protein Rpic_0899 952386 - 953387 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_0900 953400 - 954872 + | protein of unknown function DUF195 TERM 788 954906 - 954924 + T 95 -16 -3.72324 | opp_overlap 954906 GTCAGCAAAAGAAAA GGGGCGGA TAT TCCGCCCC TTCTTCGTGGACCTC TERM 789 954924 - 954906 - T 100 -16 -5.13722 | opp_overlap 954906 GTCAGCAAAAGAAAA GGGGCGGA TAT TCCGCCCC TTCTTCGTGGACCTC Rpic_0901 955226 - 954948 - | putative transmembrane protein TERM 790 955339 - 955326 - R 80 -3.1 -5.09225 | gap 1, opp_overlap 955326, overlap 955327 955328 955330 955335 AGGTGACGCAAAAAA CCGACA GCA TG-CGG TGTTGCAGCCAGCGC Rpic_0902 956658 - 955378 - | molybdenum cofactor synthesis domain protein Rpic_0903 957305 - 956691 - | molybdopterin-guanine dinucleotide biosynthesis protein A Rpic_0904 958447 - 957326 - | molybdenum cofactor biosynthesis protein A TERM 791 958591 - 958574 - R 100 -14.1 -4.8048 | CGCGCACAGGAAAAA GGGCGGC CGAA GCCGCCC CCAGGCACTTGCCCC TERM 792 958605 - 958622 + r 75 -14.1 -2.87136 | overlap 958596 CCCCAGGCACTTGCC CCGGCGG TTAC CCGCCGG TGTGCTGCTTACTGC Rpic_0905 961666 - 958631 - | ribonuclease, Rne/Rng family TERM 793 959397 - 959419 + g 80 -14.2 -3.35996 | overlap 959413 ATCAGGCCTTCGGCA GCCAGGGAAG CGG CTTCCTTGGC TTGTGCGTCGCGCTC TERM 794 961236 - 961271 + g 77 -12.4 -3.63515 | gap 1 TCCTGGCGGTCCTCG CCCTCGATGCGGC-GCG ACA CGCCGCCGCCGCGCGGG TTGTTCGGCATCAGC TERM 795 961999 - 962010 + H 74 -3.6 -4.7416 | GGCGGGGCAAATCGG GCGG CGTG CTGC TTTTTAGAGTTTTGC TERM 796 962107 - 962142 + H 100 -19 -3.86112 | opp_overlap 962108, overlap 962108 GGGCTTCTTTCACCA AGCGGGCGCCGTATGG ATGA CCATGTGGCGCCCGCC TTTGAATTCTGTTCT TERM 797 962141 - 962108 - H 90 -18.1 -3.14132 | opp_overlap 962107 962108 GGCTTCTTTCACCAA GCGGGCGCCGTATGG ATGA CCATGTGGCGCCCGC CTTTGAATTCTGTTC TERM 798 962108 - 962141 + H 100 -22.5 -2.90583 | opp_overlap 962108, overlap 962107 GGCTTCTTTCACCAA GCGGGCGCCGTATGG ATGA CCATGTGGCGCCCGC CTTTGAATTCTGTTC Rpic_0906 962408 - 963442 + | pseudouridine synthase, RluA family Rpic_0907 963423 - 964082 + | HAD-superfamily hydrolase, subfamily IA, variant 1 TERM 799 964254 - 964269 + G 76 -6.1 -4.57569 | opp_overlap 964254 GCCGATGGAAATGGA CTGGC AGGAAG GCCAG TTTTTCGAAAGCTCC Rpic_0908 964084 - 964476 + | Rieske (2Fe-2S) domain protein TERM 800 964469 - 964484 + F 84 -4 -5.20333 | gap 1 CCGAACCAACTCCTT CTGC-CT AGT AGCGCAG TTTTTCTTCTCGATC TERM 801 964715 - 964751 + G 91 -10.7 -4.67904 | overlap 964729 AGTACTGATGGCAAC GGTCCGTGAGCAGCGCG CCG CGCGCCGCTGGCGCATC TTTTTCCGCTTCGTG Rpic_0909 964515 - 965609 + | peptidase S49 TERM 802 965684 - 965649 - T 76 -7.4 -4.43844 | opp_overlap 965615, overlap 965650 CTAGCAGCGAGAAAA TCGCCGGCCGCTTG TGCAGGTT CATGCGGTCGGCGC GCCAGTCGCTCACGG Rpic_0910 966357 - 965626 - | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Rpic_0911 966957 - 966361 - | maf protein TERM 803 967027 - 967039 + H 70 -10.5 -3.53224 | opp_overlap 967026 967025 CTGCCCGCTATAATC CCGCG TTT CGCGG TTTGGCCGCGCAGTG TERM 804 967522 - 967559 + G 72 -12.8 -3.15574 | overlap 967521 TGTCATCGTTGGCTC GCGCAGCTTCGATCTG ATCACG CAGATCGAAGATGAGC TGTTGCTGGCGTTGC Rpic_0912 967151 - 967687 + | protein of unknown function DUF177 Rpic_0913 967803 - 967982 + | ribosomal protein L32 TERM 805 968074 - 968055 - f 100 -9.3 -4.75174 | opp_overlap 968055 GATGCAATCGAAAAA GCGGCAA GCCAAT TTGCCGC TTTTTTGTTGAGTGA TERM 806 968055 - 968074 + F 100 -10 -5.4833 | opp_overlap 968055 GATGCAATCGAAAAA GCGGCAAG CCAA TTTGCCGC TTTTTTGTTGAGTGA Rpic_0914 968173 - 969234 + | fatty acid/phospholipid synthesis protein PlsX Rpic_0915 969272 - 970252 + | 3-oxoacyl-(acyl-carrier-protein) synthase III Rpic_0916 970285 - 971214 + | cyclic nucleotide-binding protein Rpic_0917 971229 - 971978 + | 3-oxoacyl-(acyl-carrier-protein) reductase Rpic_0918 972165 - 972404 + | acyl carrier protein TERM 807 972431 - 972484 + F 95 -16.1 -3.93695 | gap 1, overlap 972429 972445 TCTCTTGACATCGCG GGCCACAGAAGGGGCGGTTGTCCGGT TTG ACCGGGTGG-CGCGTTTTCTGTGGCC TTTGTCGCTGATACA TERM 808 972445 - 972472 + F 70 -4.8 -4.55721 | gap 1, overlap 972429 972431 GGGCCACAGAAGGGG CG-GTTGTCCGGT TTG ACCGGGTGGCGCG TTTTCTGTGGCCTTT Rpic_0919 972518 - 973750 + | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 809 973753 - 973789 + F 85 -13 -3.74526 | gap 1 CAAGCGCCCGTAAGG CGGAGCGGCTCGTAGCC TCAC GGC-GCGAGCGGCTTCG TTGTTGCCTTGGTCG TERM 810 973952 - 973972 + F 73 -10.4 -3.58162 | overlap 973948 GGGCGGTCATCAGCG GGCTGGCG ATGGC TGCCAGCC TTCCTTTGATAGTGA Rpic_0920 974351 - 974950 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpic_0921 975057 - 975689 + | anti sigma-E protein, RseA TERM 811 975749 - 975767 + G 93 -3.7 -5.35721 | overlap 975736 975736 975751 GGCGCCCGCAAACTG CAGGCCG TTCGT CGGTCGG TTTTTCTTCTTCTGT Rpic_0922 975701 - 976798 + | putative sigma E regulatory protein, MucB/RseB Rpic_0923 976882 - 978393 + | protease Do TERM 812 978443 - 978478 + G 100 -15.6 -4.46212 | gap 1, opp_overlap 978449, overlap 978448 978449 TTTGTGCGAGGACAT GAAGAAC-GCGCTGGAG CTG CTCCGGCGCGGTTTTTC TTTTGTGCTGCACGA TERM 813 978448 - 978472 + G 100 -13.5 -5.56263 | opp_overlap 978449, overlap 978443 978449 GCGAGGACATGAAGA ACGCGCTGGAG CTG CTCCGGCGCGG TTTTTCTTTTGTGCT TERM 814 978471 - 978449 - g 89 -14.8 -3.78778 | opp_overlap 978449 978448 978443 CGAGGACATGAAGAA CGCGCTGGAG CTG CTCCGGCGCG GTTTTTCTTTTGTGC TERM 815 978449 - 978471 + G 93 -17 -3.91317 | opp_overlap 978449, overlap 978448 978443 CGAGGACATGAAGAA CGCGCTGGAG CTG CTCCGGCGCG GTTTTTCTTTTGTGC Rpic_0924 978390 - 978665 + | glutaredoxin 2 TERM 816 978851 - 978867 + F 84 -11.5 -4.09739 | GCGCGCCCGGCAGAC GCGCCCG GGA TGGGCGC TTTTCGACGCATTCG TERM 817 979456 - 979420 - g 81 -13.5 -3.57144 | overlap 979423 GCGCTGATCGCCAAA GTACCGGCGCCGAAGGG CGA CCCGGCGGCGCCGCTGC AAGCGCTGATCATCG TERM 818 979453 - 979423 - g 75 -13.8 -2.91695 | overlap 979420 CTGATCGCCAAAGTA CCGGCGCCGAAGGG CGA CCCGGCGGCGCCGC TGCAAGCGCTGATCA Rpic_0925 978883 - 980682 + | GTP-binding protein LepA Rpic_0926 980713 - 981606 + | signal peptidase I Rpic_0927 981669 - 982037 + | putative transmembrane protein TERM 819 982353 - 982337 - g 76 -9.3 -4.14511 | opp_overlap 982332 AAGGCGAGTTGAAAA GCGGAGG TTT CCGCCGC CCATCTATCCTGGCC Rpic_0928 982039 - 982809 + | Ribonuclease III Rpic_0929 982818 - 983756 + | GTP-binding protein Era Rpic_0930 983788 - 984609 + | DNA repair protein RecO Rpic_0931 984606 - 985397 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 820 985553 - 985585 + G 71 -7.7 -4.15044 | gap 1 CGCGTCTACCATGCC CGCAAGGC-GCGCT CTGAGC GGCGGGGCCTTGCG TTTCTTGCCACGCGC Rpic_0932 985394 - 985837 + | holo-acyl-carrier-protein synthase Rpic_0933 985834 - 986883 + | Beta-N-acetylhexosaminidase TERM 821 986918 - 986933 + T 80 -10.4 -4.08144 | opp_overlap 986918 GATCGCAAAAGAAAA GGCTCC CGAG GGAGCC TTTCTGCTTGCTGCG TERM 822 986933 - 986918 - T 100 -10.4 -5.09259 | opp_overlap 986918 GATCGCAAAAGAAAA GGCTCC CGAG GGAGCC TTTCTGCTTGCTGCG Rpic_0934 987534 - 986959 - | translation elongation factor P Rpic_0935 988844 - 987651 - | hypothetical protein TERM 823 990297 - 990317 + G 91 -11.1 -4.56597 | ACACCGCCGGCGAGG CCACGCAAG CCT CGTGCGTGG TTTTTCACAGCCACG Rpic_0936 988937 - 990910 + | excinuclease ABC, C subunit Rpic_0937 990978 - 991553 + | CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase TERM 824 991903 - 991919 + F 100 -12.3 -5.38054 | CGCTCCAATCCCGAA GGGAAGC CTT GCTTCCC TTTTTGTTTATCGGC TERM 825 992069 - 992099 + F 82 -12.7 -3.64703 | opp_overlap 992075, overlap 992075 GCCTCCAAAAATGCG AAAAAAGCCCCGA CTGGT TCGGGGCTTTTTG TTTGCATCGCCGCGA TERM 826 992093 - 992075 - f 100 -11.7 -5.16472 | opp_overlap 992069 992075 AAAAATGCGAAAAAA GCCCCGA CTGGT TCGGGGC TTTTTGTTTGCATCG TERM 827 992075 - 992093 + F 100 -11.7 -5.30616 | opp_overlap 992075, overlap 992069 AAAAATGCGAAAAAA GCCCCGA CTGGT TCGGGGC TTTTTGTTTGCATCG Rpic_0938 992383 - 993441 + | major facilitator superfamily MFS_1 TERM 828 994145 - 994166 + G 75 -10.1 -3.85817 | gap 1, overlap 994149 GGTGCGGCAGACGGT CGGC-CCGGC GCT GCCGGTGCTG TTTCTGACCAACCGT Rpic_0939 993930 - 994643 + | two component transcriptional regulator, winged helix family TERM 829 994662 - 994696 + G 86 -9.2 -4.57837 | overlap 994665 994669 AATCTGGGGTGGTTT GATTGGGCGCGCCG CGTTTGT CGGCGCGTTCGTTC TTTTTGGCGGCGTGT TERM 830 994665 - 994693 + G 83 -9.5 -4.40561 | overlap 994662 994669 CTGGGGTGGTTTGAT TGGGCGCGCCG CGTTTGT CGGCGCGTTCG TTCTTTTTGGCGGCG TERM 831 994669 - 994689 + G 77 -11.1 -3.74868 | overlap 994665 994662 GGTGGTTTGATTGGG CGCGCCG CGTTTGT CGGCGCG TTCGTTCTTTTTGGC Rpic_0940 994627 - 996306 + | Peptidoglycan-binding LysM TERM 832 998272 - 998287 + G 71 -11.8 -3.21099 | opp_overlap 998264 998267 CATCGAAGCAGCGGT GCGCGG CGAG CCGCGC TTGCTGGTGCGCGCG Rpic_0941 996299 - 998632 + | multi-sensor signal transduction histidine kinase Rpic_0942 998809 - 999009 + | hypothetical protein Rpic_0943 999044 - 999751 + | two component transcriptional regulator, winged helix family Rpic_0944 999779 - 1000030 + | putative transmembrane protein TERM 833 1000052 - 1000066 + T 100 -4.9 -5.84381 | opp_overlap 1000052 CGCTTCAACGTAAAG CCCTG CAAGA CGGGG TTTTTTTGTTGGTGA TERM 834 1000153 - 1000121 - T 74 -3.4 -4.73614 | overlap 1000122 CACCACTAAAAGAAA CGCCCTGACACT CGGGACAGC AGCATCAGGGCC AAGAAGGCCGCGGCT Rpic_0945 1001092 - 1000337 - | GntR domain protein Rpic_0946 1001178 - 1002548 + | glucarate dehydratase Rpic_0947 1002643 - 1003935 + | major facilitator superfamily MFS_1 Rpic_0948 1003946 - 1006357 + | glycoside hydrolase family 31 Rpic_0949 1006406 - 1007641 + | porin Gram-negative type Rpic_0950 1007641 - 1008576 + | Aldose 1-epimerase TERM 835 1009362 - 1009386 + T 100 -16.4 -5.75342 | TGTACATCGCGCGAT CGGCCGGCGC CACGA GCGTCGGCCG TTTTTTTTGACACAC TERM 836 1009463 - 1009440 - T 100 -18.2 -4.98531 | opp_overlap 1009440 TGCGCAAATGAAAAA GGCCCGACAG TTGC CTGTCGGGCC TTTCAAATACTGGTG TERM 837 1009440 - 1009463 + T 100 -18.2 -3.62572 | opp_overlap 1009440 TGCGCAAATGAAAAA GGCCCGACAG TTGC CTGTCGGGCC TTTCAAATACTGGTG Rpic_0953 1010514 - 1009579 - | transcriptional regulator, LysR family TERM 838 1011130 - 1011150 + G 95 -7.5 -5.04597 | CAATCGCCAGCGTGG TGCTGTTCG GCA CGATCGGCA TTTTTCTGTATCCGT Rpic_0954 1010607 - 1011710 + | hypothetical protein TERM 839 1011753 - 1011799 + F 100 -13.7 -4.42238 | overlap 1011754 GGCGGCTGATTCTCT TCCATGGCGCGCAAGTCGC ATCCGGTTG GCGACTTGTGCGCCGCGGC TTTTCATTCGCGTGA TERM 840 1011754 - 1011798 + F 89 -17.2 -3.2486 | overlap 1011753 GCGGCTGATTCTCTT CCATGGCGCGCAAGTCGC ATCCGGTTG GCGACTTGTGCGCCGCGG CTTTTCATTCGCGTG Rpic_0955 1011826 - 1012593 + | protein of unknown function DUF899 thioredoxin family protein TERM 841 1012765 - 1012795 + T 79 -9.7 -4.21812 | opp_overlap 1012765 1012770, overlap 1012770 ATCGATGCCACAAAT GAAAACGCCCCGC ACGAA GCGAGGCGTTTTG TTATTTTGGCTCCCC TERM 842 1012770 - 1012790 + T 100 -9.6 -5.093 | opp_overlap 1012770 1012765, overlap 1012765 TGCCACAAATGAAAA CGCCCCGC ACGAA GCGAGGCG TTTTGTTATTTTGGC TERM 843 1012790 - 1012770 - T 95 -11.8 -4.61873 | opp_overlap 1012765 1012770, overlap 1012765 TGCCACAAATGAAAA CGCCCCGC ACGAA GCGAGGCG TTTTGTTATTTTGGC Rpic_0956 1013318 - 1012989 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpic_0957 1013461 - 1013360 - | hypothetical protein Rpic_0958 1015191 - 1013497 - | single-stranded-DNA-specific exonuclease RecJ Rpic_0959 1016283 - 1015204 - | conserved hypothetical signal peptide protein Rpic_0960 1016355 - 1017605 + | lipoprotein releasing system, transmembrane protein, LolC/E family Rpic_0961 1017598 - 1018326 + | lipoprotein releasing system, ATP-binding protein Rpic_0962 1018411 - 1019223 + | TatD-related deoxyribonuclease Rpic_0963 1019233 - 1021755 + | DNA internalization-related competence protein ComEC/Rec2 TERM 844 1021840 - 1021817 - f 81 -5.8 -4.82901 | overlap 1021818 1021819 GCTGTGCTATAAAAA CCGCGTGCCG CGTA CATCGCGCGG CGCCGTCAGGGGAGG Rpic_0964 1021861 - 1023345 + | protein of unknown function DUF404 Rpic_0965 1023420 - 1024370 + | protein of unknown function DUF403 TERM 845 1024396 - 1024421 + F 73 -13.9 -2.82834 | opp_overlap 1024394 CATTGTGCATACATC GGGGCGCCGCT TTCG GGCGGCGCCCG TGTCATCGTGAAATA Rpic_0966 1024429 - 1025274 + | transglutaminase domain protein Rpic_0967 1025357 - 1026259 + | hypothetical protein TERM 846 1026493 - 1026503 + G 85 -4.6 -5.10029 | TGGCTGGTAGGGCAC TCGC TGG GCGG TTTTTTGAGCTTGAT TERM 847 1027031 - 1027017 - g 71 -7.8 -4.1899 | CTATCCGATGGAAAA GCCGCT GGA AACGGC CGGGTTGATCCGCGA Rpic_0968 1026277 - 1027098 + | putative hydrolase protein Rpic_0969 1027190 - 1028851 + | CTP synthase Rpic_0970 1028873 - 1029727 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 848 1029735 - 1029768 + F 79 -9.6 -4.27316 | gap 1, overlap 1029741 TCGACTGATTTCCCC CGATGACCGGCGGCT CTACC AGCCGCCGCT-GTCG TTTTCGGTTCAGCCC Rpic_0971 1029820 - 1030110 + | protein of unknown function DUF1330 Rpic_0972 1030165 - 1031448 + | Phosphopyruvate hydratase TERM 849 1031471 - 1031506 + F 90 -14.8 -3.53224 | gap 1 CAGTTTTGCCCTGCA TGACTGTGCGACCGCCG CTC TGGCGGTCGCATGG-CA TTTGGGGCCCGAGTC Rpic_0973 1031540 - 1031875 + | Septum formation initiator Rpic_0974 1032346 - 1031933 - | putative transmembrane protein Rpic_0975 1033465 - 1032452 - | Hsp33 protein Rpic_0976 1033989 - 1033462 - | transferase hexapeptide repeat containing protein Rpic_0977 1034063 - 1034947 + | protein of unknown function DUF455 TERM 850 1035002 - 1034991 - f 78 -4.4 -4.8543 | TAATCCCGAGAAAAA GAAC GATC GTTC GATTTATATTCGGTG TERM 851 1035797 - 1035786 - g 73 -5.8 -4.34402 | TCGCCCACACTAAAA GCCA TTGC TGGC GACGTGCCGCTGGCC Rpic_0978 1035027 - 1035944 + | alpha/beta hydrolase fold TERM 852 1035988 - 1035965 - T 87 -10.2 -4.32951 | gap 1, overlap 1035967 AGGTCAATCAAGAAA CCGCTGCGCCG CGC CGG-GCGGCGG CAGAATGCAGGTGTC Rpic_0979 1036342 - 1035953 - | putative thiol-disulphide oxidoreductase DCC Rpic_0980 1036884 - 1036339 - | hypothetical protein TERM 853 1036599 - 1036561 - G 72 -7.2 -4.21812 | overlap 1036558 1036563 CTCCAGCGAAAAGAA CAGGCGCACCGCGCCGAG CCG CTCTGTGAGGTACCCCCG GTGCAGCGACAAGGT TERM 854 1036575 - 1036563 - G 74 -10.5 -3.70622 | overlap 1036558 1036561 CCAGCGAAAAGAACA GGCGC ACC GCGCC GAGCCGCTCTGTGAG Rpic_0981 1037971 - 1036892 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 855 1037596 - 1037645 + g 81 -11.4 -4.12942 | gap 2, opp_overlap 1037602, overlap 1037641 1037644 GTACGGCGGCGCAGT CGAACACGTCGCCGGCGCTGGTGG TGAC CCGAAAGCGCCGGC--CGTGCTCG TTTTCCAGCGTTTCC TERM 856 1037723 - 1037779 + g 79 -5.9 -4.59773 | gap 2, opp_overlap 1037755 GCACTGGGCCATCAG CCGATCGACGA-GTTCCTGTGC-GGTG CACGA CACCAGCGCCGGGATGTCGTAGATGGG TTTTTCCGGGTACAG Rpic_0982 1038122 - 1038982 + | PHP domain protein Rpic_0983 1038996 - 1039619 + | Sua5/YciO/YrdC/YwlC family protein TERM 857 1040304 - 1040342 + G 77 -8.8 -4.30809 | overlap 1040303 1040309 ATGGCGCTGCTGTTT CAACTGCTGCAGTGGATT CTG AGTCCGCTGCAGATGCTG TTTTCCTGAGTCTTC Rpic_0984 1039686 - 1040351 + | peptidase M50 TERM 858 1041248 - 1041230 - g 75 -3 -4.84017 | AACCGTCGAGAAAAA GGTTCGCA CCA TGCCGACC GATCCGGCTCGCGTG Rpic_0985 1040373 - 1041575 + | tryptophanyl-tRNA synthetase TERM 859 1041807 - 1041859 + G 70 -11.2 -3.40522 | gap 1, opp_overlap 1041797 1041817, overlap 1041808 1041818 CGAAACCATCGTCGC TGACATCGAAGGCGGCCCCTGGCCG TTGC CTGCC-GGCGCCACTTTCGATGCCG TTGTCGTCACGAACT Rpic_0986 1041586 - 1042152 + | Methyltransferase type 12 Rpic_0987 1042271 - 1043155 + | dihydrodipicolinate synthase Rpic_0988 1043217 - 1044413 + | NlpBDapX family lipoprotein TERM 860 1044522 - 1044492 - g 71 -12.4 -3.19192 | opp_overlap 1044502 1044508 CGGCAGTGAAGGCAA TGCGCTGCTCGTGG AAT CCGCGAGCGGCGCG ACGTGCACGCGCATC Rpic_0989 1044448 - 1045233 + | beta-lactamase domain protein TERM 861 1045365 - 1045348 - T 100 -12.7 -5.60993 | opp_overlap 1045348 GCGCCCATAAAAAAA GCCGACC TGAA GGTCGGC TTTTTTGTCTCGCGA TERM 862 1045348 - 1045365 + T 100 -12.7 -5.36441 | opp_overlap 1045348 GCGCCCATAAAAAAA GCCGACC TGAA GGTCGGC TTTTTTGTCTCGCGA Rpic_0990 1046991 - 1045864 - | Cupin 4 family protein Rpic_0991 1047105 - 1047629 + | putative FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) protein TERM 863 1047651 - 1047678 + T 100 -16.4 -4.15044 | opp_overlap 1047656, overlap 1047656 AGTCCATCAAGATAC GAGAACGGGAGC TTCG GCTCCCGTTTTC TTTATTGCGCCGGCG TERM 864 1047673 - 1047656 - T 79 -12.7 -3.52877 | opp_overlap 1047651 1047656 ATCAAGATACGAGAA CGGGAGC TTCG GCTCCCG TTTTCTTTATTGCGC TERM 865 1047656 - 1047673 + T 100 -12.7 -5.09762 | opp_overlap 1047656, overlap 1047651 ATCAAGATACGAGAA CGGGAGC TTCG GCTCCCG TTTTCTTTATTGCGC Rpic_0992 1048756 - 1047680 - | putative transmembrane protein Rpic_0993 1051410 - 1048762 - | DNA mismatch repair protein MutS TERM 866 1049772 - 1049788 + g 72 -8.7 -4.07568 | opp_overlap 1049787, overlap 1049751 1049784 1049787 ACAGTTTCTGGAGCA GCTCTTC GTA GAGGAGC TTTTCGCGCGACAGG Rpic_0994 1052403 - 1051507 - | transcriptional regulator, LysR family TERM 867 1053196 - 1053236 + G 72 -8.4 -3.95424 | opp_overlap 1053209, overlap 1053197 1053205 1053210 GCCGCGTTCATGACT TCGCTGTACCAA-ACCGGCG GGC TGCTGGTATTGGT-CGGCGG TTTGCTGTTGCTGCT Rpic_0995 1052641 - 1054506 + | methyl-accepting chemotaxis sensory transducer Rpic_0996 1054582 - 1056387 + | methyl-accepting chemotaxis sensory transducer TERM 868 1056413 - 1056440 + T 77 -12 -3.57144 | gap 1, opp_overlap 1056399 ACTCAGGCTTCGAGC GCTGGGCCA-TCG ATG CGTCTGGCCCAGC TTTCCACCTCGCCAC Rpic_0997 1057104 - 1056400 - | MOSC domain containing protein Rpic_0998 1057805 - 1057101 - | glutamine amidotransferase class-I TERM 869 1058038 - 1058028 - H 78 -4.6 -4.7254 | ACTCCCCACGAAAAA CCCG ATT CGAG GGGGTGTCAGTCTCG Rpic_0999 1058125 - 1058520 + | conserved hypothetical membrane associated protein Rpic_1000 1058517 - 1058975 + | hypothetical protein TERM 870 1058994 - 1059010 + T 100 -10.8 -5.06816 | opp_overlap 1058994 CCGAGACGTGAAAAA GCCCGC ATAAA GCGGGC TTTTTGTTGGCGGCT TERM 871 1059010 - 1058994 - T 89 -10.8 -4.64766 | opp_overlap 1058994 CCGAGACGTGAAAAA GCCCGC ATAAA GCGGGC TTTTTGTTGGCGGCT Rpic_1001 1059856 - 1059044 - | Inositol-phosphate phosphatase TERM 872 1059865 - 1059883 + H 74 -5.9 -4.56597 | GATGCATGTGGGATC TCCGCGC CTGAC GCGCCGA TTTTTCGGAAGCGGC TERM 873 1060739 - 1060729 - g 70 -2.4 -4.62069 | opp_overlap 1060732 1060734, overlap 1060730 GGCCCAGCCGAAAAA GCTG ATG CCGC GCCTGCGACGTCTGT Rpic_1002 1060028 - 1060876 + | RNA methyltransferase, TrmH family, group 1 TERM 874 1060917 - 1060888 - f 78 -10 -3.86897 | gap 1, opp_overlap 1060888 1060887 CTGATCGCCCAGAAA GCCG-CCTCCTGG CTGAT CCAGCAGGGCGGC ATTTCCTGCATGTCT TERM 875 1060963 - 1060941 - f 71 -7.6 -4.07885 | opp_overlap 1060939, overlap 1060942 CATGTCTGGTTAAAA CCCTTGCCGC AGC GCGGTAAGGC AATGCCTTACACTGC TERM 876 1061412 - 1061432 + G 81 -11.1 -3.96327 | GTGGTGGTGAGCGCG GGCGCCAAG GTG CTTGGCGGC TTTGTCATCGGGGAT TERM 877 1061746 - 1061720 - g 71 -8.1 -4.11216 | gap 2 CGCGCACCTGGAAAA CTCGC--CGAACG ATC CGTTCGATGCGAG CGAGCTGAAGCGGAT Rpic_1003 1061025 - 1061771 + | serine O-acetyltransferase Rpic_1004 1062612 - 1061794 - | UDP-2,3-diacylglucosamine hydrolase TERM 878 1062544 - 1062569 + g 81 -16.1 -3.01712 | opp_overlap 1062544, overlap 1062546 ATCCGAAATAAAAAA CACCGGCCCGG AAAC CCGGACCGGTG TCTTCAGCGCGGAGG TERM 879 1062569 - 1062544 - G 100 -18.3 -5.64421 | opp_overlap 1062544 1062546 ATCCGAAATAAAAAA CACCGGCCCGG AAAC CCGGACCGGTG TCTTCAGCGCGGAGG TERM 880 1062546 - 1062567 + g 72 -12.9 -3.06696 | opp_overlap 1062544, overlap 1062544 CCGAAATAAAAAACA CCGGCCCGG AAAC CCGGACCGG TGTCTTCAGCGCGGA Rpic_1005 1063115 - 1062609 - | peptidyl-prolyl cis-trans isomerase cyclophilin type Rpic_1006 1063727 - 1063146 - | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 881 1063215 - 1063233 + g 95 -12.4 -4.28188 | CTGGTGCGGGAACTT GGTGGTGG TTT CCACCGCC TTTATCTTGTCGATG Rpic_1007 1064430 - 1063780 - | TPR repeat-containing protein Rpic_1008 1064684 - 1066075 + | cysteinyl-tRNA synthetase Rpic_1009 1066072 - 1066944 + | HhH-GPD family protein Rpic_1010 1067031 - 1067999 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 882 1068018 - 1068061 + GF 100 -17.7 -3.86346 | opp_overlap 1068024, overlap 1068024 GTCGGCTGATCTCGT CAAC-AAGGTCGCACAACGCG TTGC CGCGT-GTGCGGCCTTTGTTG TTTCTGGCGAGATCG TERM 883 1068054 - 1068024 - gf 88 -13.3 -3.62046 | gap 1, opp_overlap 1068024 1068018 TGATCTCGTCAACAA GGTCGCACAACGCG TTGC CGCGT-GTGCGGCC TTTGTTGTTTCTGGC TERM 884 1068024 - 1068054 + GF 100 -15.5 -4.63048 | gap 1, opp_overlap 1068024, overlap 1068018 TGATCTCGTCAACAA GGTCGCACAACGCG TTGC CGCGT-GTGCGGCC TTTGTTGTTTCTGGC Rpic_1011 1067968 - 1069386 + | tRNA(Ile)-lysidine synthetase TERM 885 1069851 - 1069812 - g 75 -9.2 -4.03234 | gap 1 TTCGGCCTACACAAA GGCGCGCATCCAGTCGATC GAC GA-CGAGCGTGTGCGCGCC GATCTCGACGCCGGT Rpic_1012 1069483 - 1070733 + | aspartate kinase TERM 886 1071090 - 1071065 - T 100 -16.9 -4.63184 | opp_overlap 1071065 AATGCACGTCAAAAA GCCCGCATGGC GCAA ACCATGCGGGC TTTTTCTTTGTCTGC TERM 887 1071065 - 1071090 + T 100 -16.2 -5.42975 | opp_overlap 1071065 AATGCACGTCAAAAA GCCCGCATGG CGCAAA CCATGCGGGC TTTTTCTTTGTCTGC Rpic_1013 1071978 - 1071184 - | short-chain dehydrogenase/reductase SDR TERM 888 1073157 - 1073127 - g 81 -11.8 -3.86944 | overlap 1073119 1073128 TCTACAAGGACGAAA CCGCCCGCCTGGAA GCG TTCAAGGCCGGCGA ATACGACGCCATGGT TERM 889 1073156 - 1073128 - g 71 -13.1 -2.91684 | overlap 1073119 1073127 CTACAAGGACGAAAC CGCCCGCCTGGAA GCG TTCAAGGCCGGCG AATACGACGCCATGG Rpic_1014 1072289 - 1074175 + | extracellular solute-binding protein family 5 Rpic_1015 1074192 - 1075244 + | binding-protein-dependent transport systems inner membrane component Rpic_1016 1075259 - 1076383 + | binding-protein-dependent transport systems inner membrane component Rpic_1017 1076380 - 1078035 + | ABC transporter related TERM 890 1078059 - 1078079 + F 78 -4.7 -4.84359 | overlap 1078062 1078066 GTTTTCGCCCTAGGG CAGTGCA GTTTAGA TGCGCTG TTTTTGTAAGAATGC Rpic_1018 1078277 - 1078924 + | NLP/P60 protein TERM 891 1078949 - 1078986 + F 80 -14.4 -3.05816 | opp_overlap 1078958, overlap 1078958 ATGCGCATCACGCAA TAGAAAAAAGCCACGC AGCTAC GCGTGGCTTTTTTTTG TTCGCTGACCCGTCC TERM 892 1078958 - 1078977 + F 100 -10.7 -6.11243 | opp_overlap 1078958, overlap 1078949 ACGCAATAGAAAAAA GCCACGC AGCTAC GCGTGGC TTTTTTTTGTTCGCT TERM 893 1078977 - 1078958 - f 100 -11.4 -5.48063 | opp_overlap 1078958 1078949 ACGCAATAGAAAAAA GCCACGCA GCTA CGCGTGGC TTTTTTTTGTTCGCT Rpic_1019 1079047 - 1079445 + | ISPsy11, transposase OrfA TERM 894 1080263 - 1080241 - g 100 -19.2 -4.78848 | CCTTGAAATACAAAA CGCCCGATGC GGT GCATCGGGCG CTCGGAGACTGAGCA Rpic_1020 1079448 - 1080275 + | Integrase catalytic region Rpic_1021 1081278 - 1080322 - | Patatin TERM 895 1080472 - 1080445 - G 81 -14.2 -3.53012 | opp_overlap 1080443, overlap 1080463 GTTGCGCGCGGTAAA GTCGCTGCCCTT CACA AACGGCAGCGAC GGTGTGATGACCACA Rpic_1022 1081484 - 1082881 + | glutamyl-tRNA synthetase TERM 896 1083134 - 1083115 - T 78 -2.2 -5.0666 | GATTCAAAAAATAAA TTTGAAAA GAGG CTTCCAAA ACGCAAAGAAGTTCG TERM 897 1083428 - 1083445 + T 100 -12.7 -5.79595 | opp_overlap 1083423 1083428 TCCGCCAAATCAAAA CCCGCTG CTTG CAGCGGG TTTTTTCTTTTGCGC TERM 898 1083445 - 1083428 - T 100 -12.7 -4.54727 | opp_overlap 1083428, overlap 1083423 TCCGCCAAATCAAAA CCCGCTG CTTG CAGCGGG TTTTTTCTTTTGCGC Rpic_1023 1084870 - 1083524 - | MATE efflux family protein Rpic_1024 1086680 - 1084890 - | putative inner membrane transmembrane protein TERM 899 1086804 - 1086774 - R 86 -12.1 -3.86346 | gap 1, opp_overlap 1086781, overlap 1086781 CCATGTGCCGAGAAA CA-AAAAAGGCAGC CGGA GCTGCCTTTTTCTG ACCACTAAGACGGTC TERM 900 1086796 - 1086781 - R 100 -10.4 -5.72622 | opp_overlap 1086781, overlap 1086774 CCGAGAAACAAAAAA GGCAGC CGGA GCTGCC TTTTTCTGACCACTA TERM 901 1086781 - 1086796 + r 100 -10.4 -4.83615 | opp_overlap 1086774 1086781 CCGAGAAACAAAAAA GGCAGC CGGA GCTGCC TTTTTCTGACCACTA Rpic_1025 1087123 - 1086863 - | ribosomal protein L31 Rpic_1026 1087884 - 1087327 - | putative signal peptide protein Rpic_1027 1088747 - 1087881 - | protein of unknown function DUF980 TERM 902 1088769 - 1088791 + r 84 -11.9 -4.06502 | opp_overlap 1088760 AGTATATCGACCGTC GCGCGCGAC TTCGC GACGCGCGC TTTCATTTGGGGATG Rpic_1028 1089478 - 1088810 - | two component transcriptional regulator, LuxR family TERM 903 1089598 - 1089587 - H 72 -2.2 -4.74103 | overlap 1089588 1089590 1089592 GGCGGAAGTCAAAAA TGAC AGCC GCCA CGGCCATGCCTCGGG Rpic_1029 1089855 - 1090496 + | hypothetical protein TERM 904 1090620 - 1090574 - T 100 -12.3 -5.75342 | gap 1, overlap 1090575 CTTGCCCAAAAAAAA GCGCATCCGGGGGGGCATAGCA CCCA CGCTATGCCCCCGCCGAT-CGG AATGAAAACGATGAG TERM 905 1090619 - 1090575 - T 100 -15.8 -4.04482 | gap 1, overlap 1090574 TTGCCCAAAAAAAAG CGCATCCGGGGGGGCATAGCA CCCA CGCTATGCCCCCGCCGAT-CG GAATGAAAACGATGA Rpic_1030 1092016 - 1090643 - | sigma54 specific transcriptional regulator, Fis family TERM 906 1092242 - 1092261 + r 84 -10.7 -4.2349 | opp_overlap 1092242 ACAGCAATAAAAAAA GCGCACC ACGATG GGTGCGC TTTTCGCTATGCAGG TERM 907 1092261 - 1092242 - R 100 -10.7 -5.85737 | opp_overlap 1092242 ACAGCAATAAAAAAA GCGCACC ACGATG GGTGCGC TTTTCGCTATGCAGG Rpic_1031 1093547 - 1092285 - | transcription termination factor Rho TERM 908 1093372 - 1093360 - G 70 -4.8 -4.4009 | overlap 1093338 GGCGAGCGCAGAAAA CCGA AGCCA TCGG GCAGCACTTCAAGTG TERM 909 1093658 - 1093691 + r 90 -18.9 -2.98823 | opp_overlap 1093658 GCAATCTTAGCACAA CGCTGGCGGGCTTCC AGGC GGAAGTGCGCCAGCG TGTGTGTGGGGCAAC TERM 910 1093691 - 1093658 - R 100 -16.7 -3.42574 | opp_overlap 1093658 GCAATCTTAGCACAA CGCTGGCGGGCTTCC AGGC GGAAGTGCGCCAGCG TGTGTGTGGGGCAAC Rpic_1032 1094063 - 1093737 - | thioredoxin TERM 911 1095819 - 1095830 + G 72 -3.6 -4.65895 | ACATGGCAGCACCGA TGCG GGCG CGCG TTTTTCGCTCACGGA TERM 912 1096009 - 1096023 + G 87 -7.8 -4.82901 | CAGTTGCCGTCGGCG CAGCCG GAG TGGCTG TTTTTCTCCAACGAC Rpic_1033 1094281 - 1097136 + | hypothetical protein Rpic_1034 1097133 - 1100654 + | UvrD/REP helicase Rpic_1035 1100943 - 1103138 + | DNA polymerase III, subunits gamma and tau TERM 913 1103307 - 1103289 - g 79 -2.4 -4.98616 | gap 1 GGAAAACATGAAAAA GGCGCAG GAGCAG CT-CGCC CTGATCGAGGTGGAA Rpic_1036 1103224 - 1103571 + | hypothetical protein Rpic_1037 1103595 - 1103894 + | Antibiotic biosynthesis monooxygenase Rpic_1038 1103894 - 1104514 + | recombination protein RecR Rpic_1039 1105917 - 1104529 - | Carbohydrate-selective porin OprB Rpic_1040 1106081 - 1106995 + | transcriptional regulator, LysR family Rpic_1041 1107018 - 1108226 + | Formyl-CoA transferase Rpic_1042 1108315 - 1109364 + | NMT1/THI5 like domain protein TERM 914 1109381 - 1109412 + F 100 -17.3 -4.07568 | opp_overlap 1109385 TCCCACAGGCTTTCA GCAACGCGCCCGG TTCCGC CCGGGCGCATTGC TTTTGGACCGCAGAC TERM 915 1109408 - 1109385 - f 74 -13.1 -3.14683 | opp_overlap 1109381 ACAGGCTTTCAGCAA CGCGCCCGG TTCCGC CCGGGCGCA TTGCTTTTGGACCGC TERM 916 1109533 - 1109518 - g 72 -9 -4.07885 | opp_overlap 1109521, overlap 1109521 CACCGCTGTGCAAAA CACCTC GCTG GAGGTG CATGCCGGCGAGTTC Rpic_1043 1109429 - 1110241 + | ABC transporter related Rpic_1044 1110265 - 1111056 + | binding-protein-dependent transport systems inner membrane component Rpic_1045 1111105 - 1111773 + | transcriptional regulator, TetR family TERM 917 1111797 - 1111814 + F 100 -8.4 -5.38326 | opp_overlap 1111792 1111791, overlap 1111791 1111794 TGAAACCAATTGCCT GCGAGG CACGTT CCTCGC TTTTTCTTTGATTCC Rpic_1046 1111874 - 1112980 + | NADH:flavin oxidoreductase/NADH oxidase TERM 918 1113004 - 1113030 + T 100 -17.3 -5.71712 | opp_overlap 1113004 TGCACCAAAGAAAAA GCCGCGCAGGT TGATC GCCTGCGCGGC TTTTTTTGTCTGGCG TERM 919 1113030 - 1113004 - T 100 -16.6 -5.33405 | opp_overlap 1113004 TGCACCAAAGAAAAA GCCGCGCAGG TTGATCG CCTGCGCGGC TTTTTTTGTCTGGCG Rpic_1047 1114029 - 1113055 - | Alcohol dehydrogenase zinc-binding domain protein Rpic_1048 1114241 - 1114996 + | stationary-phase survival protein SurE TERM 920 1115910 - 1115921 + G 81 -3.6 -4.99645 | AGTTTCACAGTACCG CGCT TGAA GGCG TTTTCTTTGTCCCGT Rpic_1049 1115012 - 1115956 + | protein-L-isoaspartate O-methyltransferase Rpic_1050 1115958 - 1116785 + | Peptidase M23 Rpic_1051 1116794 - 1117930 + | RNA polymerase, sigma 70 subunit, RpoD family Rpic_1052 1118825 - 1117962 - | Endonuclease/exonuclease/phosphatase Rpic_1053 1118986 - 1120338 + | RNA methyltransferase, TrmA family TERM 921 1120398 - 1120368 - T 91 -14.1 -3.91897 | opp_overlap 1120374, overlap 1120374 CGTCTCACGGACAAA GAAAAACCGGCGC ACCAG GCGCCGGTTTTTT TCGCTGCGCTGTTGC TERM 922 1120392 - 1120374 - T 100 -13.1 -5.38958 | opp_overlap 1120374, overlap 1120368 ACGGACAAAGAAAAA CCGGCGC ACCAG GCGCCGG TTTTTTTCGCTGCGC TERM 923 1120374 - 1120392 + T 100 -13.1 -5.47218 | opp_overlap 1120374 1120368 ACGGACAAAGAAAAA CCGGCGC ACCAG GCGCCGG TTTTTTTCGCTGCGC Rpic_1054 1121132 - 1120431 - | protein of unknown function UPF0005 TERM 924 1121479 - 1121493 + H 72 -2.1 -4.72986 | TCTTTCACGTAACAC CTTCA TTTTT TGGAG TTTTTGATGGCGCTC Rpic_1055 1121500 - 1121925 + | Nucleoside-diphosphate kinase TERM 925 1122812 - 1122772 - g 100 -20.5 -3.03441 | CATCACCTTTGAATA CTGCATGCTCGACGGCGTC AAC GACACCGTCGAGCATGCCC GTGAACTGCTGCGCG Rpic_1056 1121969 - 1123120 + | radical SAM enzyme, Cfr family TERM 926 1123253 - 1123233 - g 70 -6 -4.2717 | AGTACCCGATCAAAA GGCCGACG CCGGT CGCCGGGC CGCGATCCGATTACA Rpic_1057 1123117 - 1123914 + | type IV pilus biogenesis/stability protein PilW TERM 927 1124485 - 1124457 - g 73 -9.5 -3.91084 | gap 1, overlap 1124475 CCACCGCGAAGGAAA CGCCGGCTGCGG AGCAAA CCGC-GCCCGCG CAAGTGGCTCCAGCA Rpic_1058 1123907 - 1124989 + | transcriptional regulator, XRE family TERM 928 1125003 - 1125030 + F 70 -12.6 -2.96216 | GAACCGTTTTGTAAT TGGCGCGGTGCC TGTA GGCAGCGCGCCC TGTCTGATCATGGAA TERM 929 1126192 - 1126204 + G 88 -10.5 -4.4078 | overlap 1126188 GGCACGGGCGAGTCG CCGGC GGC GCCGG TTTTCGTTGACGGCG Rpic_1059 1125040 - 1126326 + | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Rpic_1060 1126394 - 1127746 + | histidyl-tRNA synthetase TERM 930 1127856 - 1127844 - g 73 -6.3 -4.35663 | AAGAACAGGAACAAA TTGAG AGC CTCAA GCACTGGTGGCGTGA Rpic_1061 1127813 - 1128448 + | hypothetical protein TERM 931 1129290 - 1129300 + G 70 -4.6 -4.34402 | GCCAGTTTCCAAGGT CGCG TGG CGTG TTTTGATATGAGCAC Rpic_1062 1128498 - 1129676 + | outer membrane assembly lipoprotein YfgL TERM 932 1129752 - 1129772 + F 85 -15.4 -3.12803 | overlap 1129751 GCCGCCTTGAACTTG CGCCCGCG TACTC CGCGGGCG TCTTGCATCTGCGTC Rpic_1063 1129872 - 1131215 + | small GTP-binding protein TERM 933 1131225 - 1131191 - f 80 -3.5 -5.1356 | gap 1, overlap 1131193 1131209 TCGTACGAACAAAAA CCCGTAC-GCCCAATC GAAC GATTGAGCAGCGCGCG GGCGGTGCTCGTCGG Rpic_1064 1131517 - 1131756 + | RNA chaperone Hfq Rpic_1065 1131829 - 1133082 + | GTP-binding proten HflX TERM 934 1133487 - 1133511 + G 75 -4.1 -4.59342 | overlap 1133485 1133484 TGCTGCTGGCGGTGC TCGTTGGCCTG TGG CTAGCCAGCGG TTTCTTTATCGTGCA TERM 935 1134376 - 1134399 + G 74 -13.1 -3.28712 | opp_overlap 1134361 1134360 1134374 GCAGGGCGACACATC GCGCCCGGC TCCCGC GCCGGGTGC TTCTGCGCAGGACAG Rpic_1066 1133087 - 1134520 + | HflK protein TERM 936 1134802 - 1134781 - g 79 -2.2 -4.9792 | TACGGCAGAGAAAAA GAACCTGC TGGTCG ACTGGTTC GTGAAGTGGCGCGTG TERM 937 1135180 - 1135152 - g 100 -8.8 -5.03314 | overlap 1135154 CTGAGGGCGAAAAAA TCCGCGCCGATG CCGAC CGTCAGCGCGAA GTCGTCCTGGCCGAT Rpic_1067 1134533 - 1135447 + | HflC protein TERM 938 1135474 - 1135506 + F 79 -12.8 -3.53224 | gap 1, opp_overlap 1135482, overlap 1135482 GCTGATTATTTGAGG CGGACAGA-CCCCGG CTTG CCGGGGTTTTGTTCG TTTGCCAACCGCATC TERM 939 1135482 - 1135497 + F 100 -11.8 -4.84642 | opp_overlap 1135482, overlap 1135474 TTTGAGGCGGACAGA CCCCGG CTTG CCGGGG TTTTGTTCGTTTGCC Rpic_1068 1135524 - 1135724 + | hypothetical protein TERM 940 1136675 - 1136699 + G 79 -5.5 -4.66163 | overlap 1136676 AGGTCGGAGAGGCTT TCGGCCGCGCG CGT CCTGCGACCGG TTTTTCGCTGGACCT Rpic_1069 1135783 - 1136946 + | tRNA synthetase class II (G H P and S) Rpic_1070 1137042 - 1138382 + | Adenylosuccinate synthase TERM 941 1138383 - 1138437 + F 71 -7.6 -4.07568 | opp_overlap 1138354, overlap 1138398 CCCTACAAGGACTGA CGCGCAGCTCCCAGATTCGCCCGGTG ATT TGCCGGGCGAATTTGCATGGAGCCCG TTTTCAACAGAACAC TERM 942 1138398 - 1138422 + F 90 -14.3 -3.64703 | overlap 1138383 CGCGCAGCTCCCAGA TTCGCCCGGTG ATT TGCCGGGCGAA TTTGCATGGAGCCCG Rpic_1071 1138498 - 1139070 + | phosphoribosyltransferase TERM 943 1139408 - 1139429 + F 85 -15.9 -3.17941 | opp_overlap 1139408 CGCGGAAAAGAAAAA CGGCGCAAC TTGC GTTGCGCCG TTCCTAAACTCTGGT TERM 944 1139429 - 1139408 - f 100 -15.9 -5.45802 | opp_overlap 1139408 CGCGGAAAAGAAAAA CGGCGCAAC TTGC GTTGCGCCG TTCCTAAACTCTGGT TERM 945 1140084 - 1140072 - g 71 -10.5 -3.65812 | overlap 1140069 GGCGCCCGAAGACAA GCGGC TCG GCCGC GACATCCTGATCGCG TERM 946 1141120 - 1141082 - g 89 -13.1 -4.07568 | GCGCCTTCCTGAAAA CCAGCGGCTTGACGC TGGGCGGTG GCGACAAGCCGCAGG CCGCCGATTACGCCG Rpic_1072 1139596 - 1142190 + | ribonuclease R Rpic_1073 1142230 - 1142982 + | RNA methyltransferase, TrmH family, group 3 Rpic_1074 1142982 - 1143731 + | Silent information regulator protein Sir2 TERM 947 1143722 - 1143739 + T 74 -6.2 -4.44667 | GTGCCTGCCCGCCAT GCTGGG ATAAGA CCCGGC TTTCTTCTTACGCCG Rpic_1075 1144706 - 1143747 - | transaldolase TERM 948 1145119 - 1145084 - g 77 -13.2 -3.35813 | CTCGATCTGAACGAA GTCGACGCCATCCCCG TCTA CGTGGACGGCGCTGAC GAGATCGACGCCTCG Rpic_1076 1144856 - 1145542 + | ribose 5-phosphate isomerase TERM 949 1145568 - 1145587 + T 100 -8.6 -5.75342 | opp_overlap 1145568 1145567 CGCATTGTCGAAAAG CTGCTCAT GCAA ATGGGCAG TTTTTTTTGCGCCCG TERM 950 1145668 - 1145632 - T 86 -13.3 -3.53091 | gap 1, opp_overlap 1145632 1145638, overlap 1145638 ATGGCGTTGCCCAAA CAA-AAAGCCGTTCAG TTTGCG CTGAACGGCTTTGTTG TTGATGGCGGCAGAT TERM 951 1145632 - 1145668 + T 78 -14 -3.14211 | gap 1, opp_overlap 1145632 1145638, overlap 1145638 ATGGCGTTGCCCAAA CAA-AAAGCCGTTCAGT TTGC GCTGAACGGCTTTGTTG TTGATGGCGGCAGAT TERM 952 1145661 - 1145638 - T 100 -12.5 -5.27335 | opp_overlap 1145632 1145638, overlap 1145632 TTGCCCAAACAAAAA GCCGTTCAG TTTGCG CTGAACGGC TTTGTTGTTGATGGC TERM 953 1145638 - 1145661 + T 100 -13.2 -4.48713 | opp_overlap 1145638 1145632, overlap 1145632 TTGCCCAAACAAAAA GCCGTTCAGT TTGC GCTGAACGGC TTTGTTGTTGATGGC Rpic_1077 1145958 - 1145683 - | Fe(II) trafficking protein YggX TERM 954 1145901 - 1145923 + g 71 -10.6 -3.68222 | CGCCGGGCAGGGGCG GGAAGTCGAG ACC TTCGGCTTCC TTGTTGAGCTTGACG Rpic_1078 1147463 - 1146066 - | amino-acid N-acetyltransferase TERM 955 1147709 - 1147676 - g 80 -12.3 -3.80733 | gap 1 CCCACGCCAGAAGAA CTCGC-CGCGGCGCTC GAG GCGCGCCGCGCACGTG CGAACCGCGTCCCGC TERM 956 1150811 - 1150852 + G 93 -16 -3.9392 | GAAGTTTTCGACGAC CCGGCGCAAGC-CACGCGCA TCCA TG-GCCTGGGCTTGCGCCGG TTGTTTGCGATCCAG Rpic_1079 1147535 - 1151536 + | ATP-dependent helicase HrpA TERM 957 1151519 - 1151547 + F 75 -8.2 -4.24342 | gap 1, opp_overlap 1151526, overlap 1151522 CTGCAGAAGGTGTGG GAATCGATGCAGC GATA GCTGCA-CGATGC TTTCTTGCTGGCGGG TERM 958 1151559 - 1151573 + F 100 -7.8 -5.57888 | ATGCTTTCTTGCTGG CGGGGA AAG TTCCCG TTTTCTTTTTTTGAT Rpic_1080 1151654 - 1152649 + | cytochrome d1 heme region Rpic_1081 1152661 - 1153494 + | polysaccharide deacetylase Rpic_1082 1153496 - 1154470 + | fatty acid hydroxylase Rpic_1083 1154548 - 1155405 + | putative transmembrane protein Rpic_1084 1155427 - 1156245 + | molybdopterin binding domain Rpic_1085 1156738 - 1156262 - | Rhodanese domain protein TERM 959 1156959 - 1156998 + H 72 -11.4 -3.34398 | gap 1, overlap 1156958 GCCGGATTGCAGGGC GTGC-GCACCGTGTCAGGC ATG GGCTGGCGCAGTGCTGCAC TGTTTGCGGGAGAGC TERM 960 1157272 - 1157256 - g 70 -5.1 -4.4078 | opp_overlap 1157256 GCTCGTGAAGGAAAA CGACG TCAAGTT CGTCG ATTTCCGCTTCACCG TERM 961 1158587 - 1158568 - g 74 -10 -3.7347 | CTGAAGATGGAAGAA GTCACGCG CTTC CGCATGAC GACGCACCCGCTCGA Rpic_1086 1157212 - 1158627 + | glutamine synthetase, type I TERM 962 1158677 - 1158702 + F 100 -14.7 -4.82901 | opp_overlap 1158680 GAGACGGTTGTGAGA GGAGGGGCGGC GCAG GTCGCCCTTCC TTTTTATGAAGCGGA TERM 963 1158826 - 1158840 + G 77 -12.8 -3.35224 | overlap 1158824 CATCCGGGCTGCTTG CCGCCG CTG CGGCGG TGTTTGCCACGCTGT Rpic_1087 1158786 - 1159310 + | conserved hypothetical signal peptide protein Rpic_1088 1159318 - 1160520 + | signal transduction histidine kinase, nitrogen specific, NtrB TERM 964 1160654 - 1160680 + G 72 -10.9 -3.54424 | gap 1, opp_overlap 1160648, overlap 1160653 CTTGAGAAGGCGCTG GC-GCGTGAGAG CCTG CTCTCGCGCAGC TTTACCAACGTGCGC Rpic_1089 1160591 - 1162099 + | nitrogen metabolism transcriptional regulator, NtrC, Fis Family TERM 965 1162155 - 1162183 + T 100 -16.8 -5.40072 | TTGGCGATTGGGATT GGGCGGATTTCC GATAA GGGAATCCGCCC TTTTTTTGGCGGCCG TERM 966 1162208 - 1162224 + T 70 -10.1 -3.51825 | overlap 1162204 CGGCCGAGAATGCGT GCTGCGC TTA GTGCAGC TTGTGCTTGAGCTGC Rpic_1090 1162544 - 1162215 - | hypothetical protein TERM 967 1162584 - 1162573 - R 76 -7.2 -4.56597 | opp_overlap 1162579, overlap 1162574 CGGTTGCGTTAAAAA GGCG TTGG CGCC GCATGCACCGTTATG Rpic_1091 1163606 - 1162713 - | HAD-superfamily hydrolase, subfamily IIB TERM 968 1162822 - 1162780 - G 72 -8.3 -4.08767 | GCGACTTCGGCAAAA CCGCCGCCGCCTTCG-GCCTC GGT GAGGTACGCCGGCGGC-ACGG GCAACATATCGATCA TERM 969 1162959 - 1162989 + g 75 -12.4 -3.47227 | overlap 1162971 GTCGAGGCCGAATGC GCGGCGCGCGAGCG ACA CGCTGGCGCTCAGC TTGTCGTGCTTGCCG Rpic_1092 1163804 - 1165120 + | extracellular solute-binding protein family 1 TERM 970 1165135 - 1165121 - f 85 -12.8 -3.81414 | opp_overlap 1165121 ACCGTCAAGGAATAA GCGCCG ATT CGGCGC TCGTCTAAACCGCCG TERM 971 1165141 - 1165181 + F 85 -9.6 -4.64766 | gap 1, opp_overlap 1165145, overlap 1165142 1165145 1165175 GATTCGGCGCTCGTC TAAACCGCCGGCCTCGTGC GCTT GCACC-GGCCGGCGGTGCG TTTTTGGAATGTCGC TERM 972 1165142 - 1165180 + F 72 -10.9 -3.38378 | gap 1, opp_overlap 1165145, overlap 1165141 1165145 1165175 ATTCGGCGCTCGTCT AAACCGCCGGCCTCGTGC GCTT GCACC-GGCCGGCGGTGC GTTTTTGGAATGTCG TERM 973 1165145 - 1165177 + F 85 -17 -2.84617 | gap 1, opp_overlap 1165145, overlap 1165142 1165141 1165175 CGGCGCTCGTCTAAA CCGCCGGCCTCGTGC GCTT GCACC-GGCCGGCGG TGCGTTTTTGGAATG TERM 974 1165177 - 1165145 - f 100 -17 -3.53012 | gap 1, opp_overlap 1165142 1165141 1165145 1165175 CGGCGCTCGTCTAAA CCGCCGGCCTCGTGC GCTT GCACC-GGCCGGCGG TGCGTTTTTGGAATG TERM 975 1165225 - 1165206 - g 79 -5.7 -4.65895 | gap 1, opp_overlap 1165175 TGTCGCATGGAAAAA CGCG-TCG TTTTC CGATCGCG CTGGCTGCCGTATGT Rpic_1093 1165197 - 1166078 + | binding-protein-dependent transport systems inner membrane component TERM 976 1166801 - 1166774 - g 75 -7.7 -4.22883 | overlap 1166779 CACGACGGAAAAGAA CATGACGCCCA TTGTGC TGGGCGTGACG CAAATGATCTCCCGC Rpic_1094 1166097 - 1166945 + | binding-protein-dependent transport systems inner membrane component Rpic_1095 1166956 - 1168053 + | ABC transporter related TERM 977 1168418 - 1168472 + G 71 -12.3 -3.28712 | gap 3, opp_overlap 1168415 1168416, overlap 1168419 1168446 TATCGAGATTAAGCC GGTGCCGGGCGTCGAGTGGCGCACGG GCGCTG CTGT-CG-CGCTCGACGCCC-GCACG TTGTGGGCCGGCGCC TERM 978 1168419 - 1168471 + G 77 -15.8 -2.57132 | gap 3, opp_overlap 1168415 1168416, overlap 1168418 1168446 ATCGAGATTAAGCCG GTGCCGGGCGTCGAGTGGCGCACGG GCGCTG CTGT-CG-CGCTCGACGCCC-GCAC GTTGTGGGCCGGCGC Rpic_1096 1168050 - 1168802 + | Glycerophosphodiester phosphodiesterase TERM 979 1171766 - 1171784 + G 72 -13.2 -3.14564 | opp_overlap 1171769, overlap 1171769 CCAGGACGAGCCGCA GAACCAGG GCG CCTGGTTC TTCGTGCAGCACTAC TERM 980 1171769 - 1171781 + G 71 -9.1 -3.71848 | opp_overlap 1171769, overlap 1171766 GGACGAGCCGCAGAA CCAGG GCG CCTGG TTCTTCGTGCAGCAC Rpic_1097 1169094 - 1171958 + | 2-oxoglutarate dehydrogenase, E1 subunit TERM 981 1172011 - 1171959 - f 86 -14.2 -3.53444 | gap 1, opp_overlap 1171967, overlap 1171955 GTGCTGAACAAGTAA GCGACATCTGCACCAAGGCGGCAGC TTCG GCTGTCGCCTTGACGCATCT-TCGC TCCCGAATTCCACCG TERM 982 1171967 - 1172004 + F 83 -16.3 -3.08798 | opp_overlap 1171959 1171955 CAAGTAAGCGACATC TGCACCAAGGCGGCAGC TTCG GCTGTCGCCTTGACGCA TCTTCGCTCCCGAAT TERM 983 1172397 - 1172342 - g 70 -14.4 -2.57192 | opp_overlap 1172349, overlap 1172338 ACCGAAGGCAAGGCA GGCGCCGCCGCTCCGGCTGCTGCTGC TCCG GCTCCCGCAGCCGCTGCACCGGCACC GGTTGCTGCTCCGGC TERM 984 1172349 - 1172399 + G 71 -12.5 -3.21099 | opp_overlap 1172338 1172342 GCAAGGCAGGCGCCG CCGCT-CCGGCTGCTGCTGCTCCGG CTC CCGCAGCCGCTGCA-CCGGCACCGG TTGCTGCTCCGGCCG TERM 985 1172809 - 1172833 + G 84 -12.9 -3.71848 | opp_overlap 1172806 1172805 1172803 GTTCGAGAAGACTCA CGGCGTGAAGC TGG GCTTCATGTCG TTCTTCGTGAAGGCG Rpic_1098 1172093 - 1173343 + | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 986 1173394 - 1173362 - f 79 -16.4 -2.78463 | opp_overlap 1173353, overlap 1173348 1173365 1173367 ACCGCGTTGATGACA CGAGACGCCGCC-CAC GCT GTGCGGCGGCGTC-CG AATCGAGGATTTCTC TERM 987 1173392 - 1173365 - f 85 -17.8 -2.66316 | gap 1, opp_overlap 1173353, overlap 1173362 1173367 GCGTTGATGACACGA GACGCCGCC-CAC GCT GTGCGGCGGCGTC CGAATCGAGGATTTC TERM 988 1173390 - 1173367 - f 79 -14.6 -2.87468 | gap 1, opp_overlap 1173353, overlap 1173365 1173362 GTTGATGACACGAGA CGCCGCC-CAC GCT GTGCGGCGGCG TCCGAATCGAGGATT Rpic_1099 1173411 - 1174847 + | dihydrolipoamide dehydrogenase TERM 989 1174905 - 1174870 - f 73 -13.4 -2.78712 | gap 1, opp_overlap 1174869 1174867 1174866, overlap 1174867 GCCGCAAGGCAAGCA CGATGCCCGGTGAATCC ACA AGATTG-CCGGGCATCG GTCCATTTGGGCGCG Rpic_1100 1174948 - 1176045 + | AFG1-family ATPase Rpic_1101 1176908 - 1176066 - | putative lipoprotein TERM 990 1178304 - 1178271 - g 75 -12.3 -3.53012 | gap 1 TTCTCTCGGGTGAAA GCGTGCCGCGTCCGCG CGA CGTGGGCGCGAC-CGC GCTGGCAGGCAGCTA Rpic_1102 1177085 - 1179628 + | heavy metal translocating P-type ATPase Rpic_1103 1179639 - 1179818 + | cytochrome oxidase maturation protein, cbb3-type Rpic_1104 1179914 - 1181371 + | cytochrome c oxidase, cbb3-type, subunit I Rpic_1105 1181382 - 1182065 + | cytochrome c oxidase, cbb3-type, subunit II Rpic_1106 1182069 - 1182251 + | conserved hypothetical signal peptide protein Rpic_1107 1182264 - 1183187 + | cytochrome c oxidase, cbb3-type, subunit III TERM 991 1183347 - 1183378 + G 84 -13.9 -3.6608 | gap 1, opp_overlap 1183355, overlap 1183334 TCTGGCTGGTGTTGG CCAC-GCAAGCCAT CTTTT ATGGCTTGCCGTGG TTTCAGTGGAATGGT Rpic_1108 1183184 - 1184647 + | cytochrome c oxidase accessory protein CcoG Rpic_1109 1184674 - 1184901 + | putative lipoprotein transmembrane TERM 992 1185009 - 1185053 + G 81 -9.5 -4.30911 | gap 2, opp_overlap 1185014 1185016 1185019, overlap 1185019 CTGCGTTTCTTCGGC GAACAGATCACCGTGTCGGCC CAGGC GGTCTACACGGT-ATC-GTTC TTTGTGTTCTGGTTG Rpic_1110 1184898 - 1185152 + | putative transmembrane protein TERM 993 1185159 - 1185138 - T 78 -13.7 -3.18681 | CTGGAAGCGCATGAA CACCCGCTC GTGT GAGCGGGCG CCATGGAAGGAGCCT Rpic_1111 1185902 - 1185174 - | transcriptional regulator, Crp/Fnr family TERM 994 1186092 - 1186103 + G 70 -5.8 -4.30844 | overlap 1186083 AGATGAGTGCTGCAG CGCT TCTG AGCG TTTTCCTCATCGCAT Rpic_1112 1186079 - 1186822 + | putative transmembrane protein TERM 995 1187244 - 1187226 - f 80 -10.2 -4.09818 | overlap 1187227 AATAGCAATCAGAAA TGCCGCGA GCG TCGCGGCG GGACGACAAACCTCA TERM 996 1187243 - 1187227 - f 76 -13.7 -3.04806 | overlap 1187226 ATAGCAATCAGAAAT GCCGCGA GCG TCGCGGC GGGACGACAAACCTC Rpic_1113 1187310 - 1188152 + | segregation and condensation protein B TERM 997 1188464 - 1188442 - g 79 -14.8 -3.04322 | opp_overlap 1188448 1188450 CGCAACCGCGCAAGA CCCGCGCGCC ACG GGCGCGCAAG CCGAAAGAGGCGGCT Rpic_1114 1188243 - 1190027 + | pseudouridine synthase TERM 998 1190031 - 1190067 + F 82 -8.8 -4.386 | gap 2, opp_overlap 1190031, overlap 1190034 GGTAAGCGTTAAAAA TGCGGGCGTTGTGTGCGG CAT TCGT-CGCAACGCCC-CA TTTTGTGGCGGCTTC TERM 999 1190067 - 1190031 - f 70 -3.7 -4.62471 | gap 2, opp_overlap 1190031 1190034 GGTAAGCGTTAAAAA TGCGGGCGTTGTGTGCG GCATT CGT-CGCAACGCCC-CA TTTTGTGGCGGCTTC TERM 1000 1190085 - 1190097 + F 75 -7.7 -4.18018 | TTGTGGCGGCTTCGG GGCAA TTT TTGCC TTTTGCCTCGAAGCG TERM 1001 1190167 - 1190181 + F 100 -11.4 -6.23209 | opp_overlap 1190154 1190167 GATGGGCGAATGATA TGGGCG TTG CGCCCA TTTTTTTTTGCTTCA TERM 1002 1190391 - 1190375 - g 85 -7.3 -4.62302 | GAAGATTGCGAAAAA GTGAGTC ATC AACTCAC GCGCGTGTTCGAAGT Rpic_1115 1190234 - 1190722 + | protein of unknown function DUF150 TERM 1003 1191466 - 1191431 - g 72 -9 -4.07568 | gap 1, opp_overlap 1191424, overlap 1191450 1191453 GCGTGCGTGCGAAAA TCGCGGTCGTTGCACAT GAC AAGCGCATCGACC-CGA TTGGCACTTGCGTCG Rpic_1116 1190719 - 1192194 + | NusA antitermination factor TERM 1004 1192492 - 1192480 - g 71 -9.1 -3.74224 | overlap 1192471 GCGAAACCAGCGAAA TCCGC CAG GCGGA TGCCACGGGTAAGAC TERM 1005 1193141 - 1193095 - g 70 -14.3 -2.5001 | overlap 1193084 1193094 1193111 1193136 AGAAGGCCGAGCAAT CGGGCACGCTGCACAAGCCGG TCAAG CCGGCTGGCGAAGCACGTCCG GCAGCAGCCAAGAAG TERM 1006 1193203 - 1193156 - g 100 -19.3 -3.69395 | gap 3, overlap 1193136 GGCAGCAGCCAAGAA GCCGGC-AGCTCCGGCACCGGCTG CTG CA-CCGGCACCGG-GCTCGCCGGC TGGTGACAAGAAGGG Rpic_1117 1192257 - 1195151 + | translation initiation factor IF-2 TERM 1007 1195193 - 1195221 + F 100 -17.4 -4.98672 | GGCTCGACTTTGCGA CGGTGGCCCGGG CGCGT CCCGCGCCACCG TTTTGTCTTTTTGGG Rpic_1118 1195279 - 1195650 + | ribosome-binding factor A TERM 1008 1195694 - 1195684 - g 72 -8.2 -4.09685 | opp_overlap 1195683 GCCCAGGCCCCAAAA GCCG CCG CGGC GTGATGTGCATGGCG Rpic_1119 1195652 - 1196608 + | tRNA pseudouridine synthase B TERM 1009 1196630 - 1196648 + F 100 -14.6 -5.14965 | opp_overlap 1196630 CGGCTGACCAAAAAA GCCACCGA ACT TCGGTGGC TTTTTTCATGGAGCT TERM 1010 1196648 - 1196630 - f 100 -14.6 -5.14563 | opp_overlap 1196630 CGGCTGACCAAAAAA GCCACCGA ACT TCGGTGGC TTTTTTCATGGAGCT Rpic_1120 1196718 - 1197116 + | ISPsy11, transposase OrfA TERM 1011 1197934 - 1197912 - g 100 -19.2 -4.78848 | CCTTGAAATACAAAA CGCCCGATGC GGT GCATCGGGCG CTCGGAGACTGAGCA Rpic_1121 1197119 - 1197946 + | Integrase catalytic region Rpic_1122 1199548 - 1197992 - | drug resistance transporter, EmrB/QacA subfamily Rpic_1123 1200841 - 1199552 - | secretion protein HlyD family protein Rpic_1124 1202427 - 1200898 - | RND efflux system, outer membrane lipoprotein, NodT family Rpic_1125 1203027 - 1202509 - | transcriptional regulator, MarR family TERM 1012 1204159 - 1204121 - g 87 -14.5 -3.68341 | AACGGTATTGAAGAA CTGGGCATCGGCTGCAC CGTGT GCGCGCCCGACGCCCAG GAAGCCCTGCCGATG Rpic_1126 1203278 - 1205098 + | GTP-binding protein TypA TERM 1013 1205123 - 1205142 + T 100 -12.1 -5.86061 | opp_overlap 1205123 GATCTGCCAGAAAAA CGCCCCG AGATTC CGGGGCG TTTTTTTTGCTCGGC TERM 1014 1205142 - 1205123 - T 100 -12.8 -4.83615 | opp_overlap 1205123 GATCTGCCAGAAAAA CGCCCCGA GATT CCGGGGCG TTTTTTTTGCTCGGC Rpic_1128 1207002 - 1205413 - | Rhodanese domain protein TERM 1015 1207140 - 1207160 + H 100 -9.1 -5.07523 | overlap 1207135 GGCTGGGGTGTCTGC CTGAACAGA GTG TTTGTTCAG TTTTATTTGTGTGTC Rpic_1129 1207259 - 1208128 + | transcriptional regulator, LysR family Rpic_1130 1209026 - 1208121 - | fatty acid hydroxylase TERM 1016 1208737 - 1208722 - G 88 -9 -4.59027 | overlap 1208732 AAGTAGTACAGAAAA TCCTGC AACA GCAGGA GCAGCACGAATGACC Rpic_1131 1209039 - 1210283 + | Enoyl-CoA hydratase/isomerase TERM 1017 1210664 - 1210676 + G 79 -10.5 -4.0896 | overlap 1210666 CGCTGCGCGAAGTGC CCGGG CAA CCCGG TTTTCCCGCCAATTT Rpic_1132 1210378 - 1210728 + | hypothetical protein TERM 1018 1210865 - 1210822 - f 82 -14.7 -3.16564 | gap 1 TCCCTACCGTAGCAA GAGTCATC-GGCGCGCATGT CACGC ACATGCGCGCATGACGACCC ATTCAACGCTGATCA Rpic_1133 1210895 - 1211128 + | hypothetical protein TERM 1019 1211179 - 1211200 + F 100 -8.6 -6.22691 | opp_overlap 1211180, overlap 1211180 ACCCCGCAGCAAGCA AGCCCCGC CACCGC GCGGGGCG TTTTTTTTCTTCTTC TERM 1020 1211199 - 1211180 - f 76 -12.1 -3.39895 | opp_overlap 1211179 1211180 CCCCGCAGCAAGCAA GCCCCGC CACCGC GCGGGGC GTTTTTTTTCTTCTT TERM 1021 1211180 - 1211199 + F 100 -12.1 -4.29954 | opp_overlap 1211180, overlap 1211179 CCCCGCAGCAAGCAA GCCCCGC CACCGC GCGGGGC GTTTTTTTTCTTCTT TERM 1022 1211405 - 1211386 - f 74 -12.8 -3.24747 | GGTGCAGATCACCAA CCCGCGCG AGGC CGCGCAGG CCTTCGGCCAGAACA Rpic_1135 1212325 - 1212846 + | lysis protein Rpic_1136 1213103 - 1213681 + | hypothetical protein Rpic_1137 1214185 - 1213922 - | hypothetical protein Rpic_1138 1215009 - 1214218 - | short-chain dehydrogenase/reductase SDR Rpic_1139 1215652 - 1215041 - | Glutathione S-transferase domain Rpic_1140 1215931 - 1216254 + | transposase IS3/IS911 family protein Rpic_1141 1216251 - 1216802 + | integrase catalytic region Rpic_1142 1217019 - 1217306 + | histone family protein nucleoid-structuring protein H-NS Rpic_1143 1218094 - 1217435 - | GCN5-related N-acetyltransferase Rpic_1144 1219460 - 1218099 - | Glycine C-acetyltransferase Rpic_1145 1220370 - 1219477 - | UDP-3-0-acyl N-acetylglucosamine deacetylase Rpic_1146 1228040 - 1220370 - | Beta-ketoacyl synthase Rpic_1147 1229693 - 1228116 - | sulfatase TERM 1023 1228602 - 1228584 - G 93 -17.4 -3.36749 | CATCGCGAAGACGAA CGCCGGCG AAT CGCCGGCG GCCTCAAGTTCGACC TERM 1024 1229612 - 1229575 - G 72 -3.4 -4.65895 | overlap 1229578 1229579 GTTGCCACCGAAAAA CCAT-GCGTGGCAAGCGC CGCA GCG-TTGCGCCGCCACGG CGGCGCGGAACGCGG Rpic_1148 1230485 - 1229700 - | short-chain dehydrogenase/reductase SDR Rpic_1149 1231686 - 1230478 - | Capsule polysaccharide biosynthesis protein TERM 1025 1231963 - 1231978 + H 79 -9 -4.258 | ATTGGGGTGGTAACG CGCAGA TAAG TCTGCG TTTATTGATGGATCG TERM 1026 1233072 - 1233046 - g 71 -12.3 -3.28712 | GGCGGCGCTGGAGAA TGCCCGCGCTG AAGCG CAGCGCAAGCA ACTGTACCTGGAACG Rpic_1150 1232060 - 1233226 + | WcbD TERM 1027 1233595 - 1233619 + G 100 -4.9 -5.61881 | overlap 1233580 GTCGCGCGTCATTCT GGAGATTGCCG GGG CGACCATTTCC TTTTTGTTTTTGACA Rpic_1151 1233245 - 1234036 + | ABC-2 type transporter Rpic_1152 1234033 - 1234686 + | ABC transporter related TERM 1028 1235605 - 1235561 - g 86 -3.5 -5.16237 | gap 1, overlap 1235562 1235563 1235574 AAGCCGATCAAAAAA GCCTACGAGCAGAGGCCTGA GGCCGT CCAGGCCTG-GCTCGAAGAT GAATACCCCGCCATC Rpic_1154 1235138 - 1236181 + | ISXo7 transposase TERM 1029 1237024 - 1237003 - T 70 -10.2 -3.54919 | opp_overlap 1237003 AAGTATTTCGGGAAA TAGCTGGC GCCCAT GCCAGCTA TTTTGCCGCCGGCAC TERM 1030 1237003 - 1237024 + T 84 -10.9 -4.07568 | opp_overlap 1237003 AAGTATTTCGGGAAA TAGCTGGCG CCCA TGCCAGCTA TTTTGCCGCCGGCAC Rpic_1155 1237986 - 1237327 - | transferase hexapeptide repeat containing protein Rpic_1156 1239170 - 1238055 - | glycosyl transferase group 1 TERM 1031 1238963 - 1238907 - G 75 -10.2 -3.90112 | gap 2, overlap 1238909 GTTTGGCGAATGAAA TACATGGCTTCGCATTTGGCGCCGCATG TTC CA-GCGGCGCCAACTG-GCAGGCATGCG GGGCAGCAAGCCCTT TERM 1032 1238961 - 1238909 - G 86 -15 -3.54146 | gap 2, overlap 1238907 TTGGCGAATGAAATA CATGGCTTCGCATTTGGCGCCGCATG TTC CA-GCGGCGCCAACTG-GCAGGCATG CGGGGCAGCAAGCCC Rpic_1157 1240060 - 1239167 - | NAD-dependent epimerase/dehydratase TERM 1033 1239968 - 1239930 - G 100 -21 -2.8805 | opp_overlap 1239921 1239938 1239940 AGCAGGTCGCACACA TGCACACGCACCGACGCC TCG GGCGCCGGTGTGTGTGCC AGGCCGCAGACTTCG TERM 1034 1239938 - 1239960 + g 77 -14.8 -2.87132 | opp_overlap 1239930, overlap 1239921 1239940 GCACACATGCACACG CACCGACGCC TCG GGCGCCGGTG TGTGTGCCAGGCCGC Rpic_1158 1241098 - 1240064 - | GDP-mannose 4,6-dehydratase Rpic_1159 1245499 - 1241303 - | glycosyl transferase group 1 TERM 1035 1243960 - 1243946 - G 71 -10 -3.60792 | ATGACTCAGATAGAA GTCGTG CAA CACGAC GGTGCCAGGATGCCT TERM 1036 1244933 - 1244920 - G 77 -5.2 -4.70879 | TTGAAATGTTAAAAA CCCG TTCTGG CGGG AGCTGAAGTGCATGA Rpic_1160 1248138 - 1245499 - | methyltransferase FkbM family TERM 1037 1246083 - 1246048 - G 79 -7 -4.55491 | gap 1 TATGTAAGCACAAAA GACGAAGTCCTGATCGT GGT ACGA-CAAGAGTTCATC CAGCGTGTGTGCTGT TERM 1038 1246996 - 1247013 + g 88 -8.5 -4.61231 | TTGGCGGGTTTGCAT GAGTTCT TGGG AGAACTC TTTTTCCCGCTGTAC Rpic_1161 1249513 - 1248347 - | polysaccharide export protein TERM 1039 1249770 - 1249801 + G 77 -4.9 -4.61147 | overlap 1249771 TCCGCCACTATGCAT CCCGCGCGCGTGC CGTACT GAGCGAGCGCGGA TTTTATGTCGTATTG Rpic_1162 1249661 - 1250815 + | glycosyl transferase group 1 TERM 1040 1251417 - 1251447 + G 81 -3.1 -5.00884 | overlap 1251423 CGGGTGATCTGCCTA CAGGCACGCGCAG AATTG CTGCGGGTTTCAG TTTTTTCGCCACGCT TERM 1041 1251775 - 1251796 + G 74 -5.1 -4.56597 | overlap 1251776 GCGAGTGGCGGGGGT GCGTTTCCA GCTA TGGAAGCGG TTTTTCGCCACACCA TERM 1042 1252192 - 1252153 - g 72 -11.3 -3.54029 | gap 1, overlap 1252150 1252154 1252184 CGTCACGAAGTACAA CCTCGGCCGGCGCGCGCC GGGCT GGAACGCACCGGCCG-GC AAGACGGTCATCCTC TERM 1043 1252191 - 1252154 - g 75 -14.8 -2.72096 | gap 1, overlap 1252150 1252153 1252184 GTCACGAAGTACAAC CTCGGCCGGCGCGCGCC GGGCT GGAACGCACCGGCCG-G CAAGACGGTCATCCT Rpic_1163 1250816 - 1252831 + | Capsule polysaccharide biosynthesis protein TERM 1044 1253697 - 1253683 - g 91 -7.1 -5.08824 | opp_overlap 1253683, overlap 1253684 CCGTCATGGAAAAAA CGGCA CATGC TGCCG TTGTGACGGCGGCTG Rpic_1164 1252908 - 1254332 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 1045 1254392 - 1254354 - T 76 -13.1 -3.39018 | gap 1, opp_overlap 1254361, overlap 1254352 1254357 TCACGACTGCAAAGA CTACCTCGCGCACGCGCC CACG GGCGCATGC-CGAGGGCG GTGAGGCTACTGTTG TERM 1046 1254389 - 1254357 - T 86 -17.8 -2.85297 | gap 1, opp_overlap 1254361, overlap 1254354 1254352 CGACTGCAAAGACTA CCTCGCGCACGCGCC CACG GGCGCATGC-CGAGG GCGGTGAGGCTACTG Rpic_1165 1255540 - 1254437 - | Male sterility domain TERM 1047 1255524 - 1255512 - G 73 -6.2 -4.36914 | GCGCCGCCTACAAAA CCGG TCGCG CCGG TTAGCAGAATACTCA TERM 1048 1255949 - 1255961 + H 71 -9.1 -3.81027 | TGTCGACCGGCCCTT CCAGC CGA GCTGG TTTGGCTTCGTTCGG TERM 1049 1256291 - 1256268 - H 82 -11.8 -3.89212 | opp_overlap 1256268, overlap 1256269 TACGCACATATCAAA CTGAATCGCC CCGG GGCGATTCAA GTTCCGTACGCAAGT TERM 1050 1256290 - 1256269 - H 70 -13.1 -2.93045 | opp_overlap 1256268, overlap 1256268 ACGCACATATCAAAC TGAATCGCC CCGG GGCGATTCA AGTTCCGTACGCAAG Rpic_1166 1256305 - 1256928 + | hypothetical protein Rpic_1168 1257380 - 1257751 + | transposase IS3/IS911 family protein Rpic_1169 1257748 - 1258083 + | IS66 Orf2 family protein Rpic_1170 1258146 - 1259675 + | transposase IS66 TERM 1051 1260338 - 1260356 + T 72 -3 -4.77157 | ATGACCCTTTTTGTG GGCGGG AATGTGA CGCGCC TTTTTGATGCGTTCG Rpic_1171 1261743 - 1260493 - | diguanylate cyclase with PAS/PAC sensor TERM 1052 1261413 - 1261403 - G 74 -5.4 -4.55287 | TGCACCGAGACAAAA TTGG TGA CCAA CCCGCTGTCGTCGCG Rpic_1172 1262650 - 1261874 - | diguanylate phosphodiesterase TERM 1053 1262296 - 1262282 - G 71 -10 -3.61178 | CCGATTGATGGGAAA GCCGAA TTT TTCGGC CGCTTCAAACGTTGT Rpic_1173 1263449 - 1263138 - | putative integrase/recombinase TERM 1054 1263504 - 1263489 - H 84 -5.4 -5.00884 | gap 1, overlap 1263492 ATTGGGCCGAAAAAA TGAGCGG AAA CCGC-CA CAAATCTCATGAAAT Rpic_1174 1263605 - 1264588 + | TIM-barrel protein, yjbN family TERM 1055 1264611 - 1264599 - T 70 -10.5 -3.54424 | TTTGATGCGGGGAAA GGGGC GTT GCCCC GATCGCTGAATGCAA TERM 1056 1264631 - 1264646 + T 100 -11.8 -5.08088 | opp_overlap 1264631 GCTGAATGCAAAAAA GCCCGC GAAT GCGGGC TTTTTCTTGAAACTT TERM 1057 1264646 - 1264631 - T 100 -11.8 -5.15969 | opp_overlap 1264631 GCTGAATGCAAAAAA GCCCGC GAAT GCGGGC TTTTTCTTGAAACTT TERM 1058 1264736 - 1264779 + T 72 -11 -3.30338 | gap 1, overlap 1264730 1264737 ACTGAGCTACAGCCA CCGTTGTTGCCT-GACCGGCG TGT CGCCGTTCAAGGAAACAGCGA TTATACAAACATTCT TERM 1059 1264737 - 1264778 + T 76 -14.5 -2.57881 | gap 1, overlap 1264730 1264736 CTGAGCTACAGCCAC CGTTGTTGCCT-GACCGGCG TGT CGCCGTTCAAGGAAACAGCG ATTATACAAACATTC Rpic_1175 1265222 - 1264827 - | hypothetical protein TERM 1060 1265323 - 1265334 + H 76 -7.2 -4.56597 | CTTCGCCCCTATGAT GGCG CCTT CGCC TTTTTCGGAAACCAC Rpic_1176 1265354 - 1267084 + | dipeptidase TERM 1061 1267132 - 1267156 + G 72 -13.5 -3.05343 | overlap 1267146 CCAAGTCGTTCACCG CCGAGCGTGCC TGG GGCGCGCTCGA TATTGCCAATATGAG Rpic_1177 1267101 - 1267412 + | cyclic nucleotide-binding protein TERM 1062 1267461 - 1267445 - T 100 -13.7 -5.75342 | GCGGCGCAAAAAAAA GCCCGCA ATG TGCGGGC TTCGAATTCAGCGAT TERM 1063 1267626 - 1267604 - T 100 -9.8 -5.67967 | ACGAGCAGAAAAAAA CAGCCCGC TCAAACG GCGGGCCG AAAATCAGTTGAAGA TERM 1064 1267659 - 1267644 - T 84 -10.4 -4.19336 | AATCAGTTGAAGAAA GCCCTG TCCT CAGGGC ACGGCAAGTGTATGA Rpic_1178 1267944 - 1267759 - | hypothetical protein Rpic_1179 1268714 - 1268064 - | transcriptional repressor, LexA family Rpic_1180 1268968 - 1269744 + | Oxidoreductase FAD-binding domain protein TERM 1065 1269767 - 1269786 + F 100 -12.1 -5.26119 | opp_overlap 1269767 GGCTTCTGTTGCAAA CGCCGGC CTGGGT GCCGGCG TTTTGTTTTTGCCGG TERM 1066 1269786 - 1269767 - f 79 -12.1 -3.53012 | opp_overlap 1269767 GGCTTCTGTTGCAAA CGCCGGC CTGGGT GCCGGCG TTTTGTTTTTGCCGG Rpic_1181 1269882 - 1270874 + | Asparaginase TERM 1067 1270907 - 1270888 - f 71 -7.2 -4.20883 | gap 1, opp_overlap 1270881, overlap 1270881 1270905 GAAAAAGTCGCAAAA GCCTGCGTA TAA TA-GCAGGC TAACCAACCTTGCTG Rpic_1182 1270968 - 1271336 + | ribosomal protein S6 Rpic_1183 1271378 - 1271704 + | hypothetical protein Rpic_1184 1271708 - 1271995 + | ribosomal protein S18 Rpic_1185 1272020 - 1272472 + | ribosomal protein L9 TERM 1068 1272527 - 1272548 + F 100 -12.3 -5.59534 | opp_overlap 1272527 GGCGCGAGTCAAGAA GGCAGGGAC GAAA GTCTCTGCC TTTTTTGTTGTCCTT TERM 1069 1272548 - 1272527 - f 73 -10.1 -3.67597 | opp_overlap 1272527 GGCGCGAGTCAAGAA GGCAGGGAC GAAA GTCTCTGCC TTTTTTGTTGTCCTT Rpic_1186 1272614 - 1274002 + | replicative DNA helicase TERM 1070 1274082 - 1274111 + F 100 -13.6 -4.60487 | gap 1, opp_overlap 1274082 1274084, overlap 1274103 ATTGCGTTTTAATGA CAGCGCCGG-CGG TGATC CCGTCCGGCGTTG TTTTTACGACTCCTG TERM 1071 1274341 - 1274310 - g 71 -8 -4.19577 | GAATTTTGAAAAGAA GGCCGATCGCATCA CGCA TGACACGATCGAAC TGCTGCACAAGACTT Rpic_1187 1274152 - 1274778 + | protein of unknown function DUF47 Rpic_1188 1274793 - 1275803 + | phosphate transporter TERM 1072 1275866 - 1275836 - T 100 -16.2 -4.58395 | opp_overlap 1275841 TTCACTTCGCAAAAA CGAAACGCCCACCA AAC CGGTGGGCGTTTTG CATTGGGGCGAGCGA TERM 1073 1275841 - 1275861 + T 100 -14 -4.27316 | opp_overlap 1275836 TTCGCAAAAACGAAA CGCCCACC AAACC GGTGGGCG TTTTGCATTGGGGCG Rpic_1189 1276635 - 1275886 - | NLP/P60 protein TERM 1074 1276710 - 1276763 + r 74 -10.9 -3.5394 | gap 1, overlap 1276743 1276744 CTGCGTGTTGGCGAG GCGCAACGCCAAGCAGGGCGCGGGTC TGC GAATTTTGCCCTGA-TGGCGTCGCGC TTTGCGGGCAGGTTT Rpic_1190 1277202 - 1276777 - | putative signal peptide protein TERM 1075 1277276 - 1277257 - R 100 -10.6 -5.86965 | overlap 1277267 ATGCAGCAAAAAAAA GGCCACGC AATC GCGAGGCC CGATGGCACAACGGT Rpic_1191 1279051 - 1277324 - | PhoH family protein TERM 1076 1277702 - 1277738 + g 78 -3.5 -4.91084 | overlap 1277705 CTTTTGCAGGACCTC GAGGTTGTCGTCGAAGG CGC CCATCCACGGCTGCATC TTTTCTTCTTCCGTG TERM 1077 1278106 - 1278095 - G 70 -5.8 -4.2772 | TTCAAGGAAGACAAA CTGG TTGA CCAG GAACGATGGCACCAG TERM 1078 1279115 - 1279088 - R 82 -11.3 -3.89131 | gap 1, overlap 1279080 1279081 GGAACAACGACGAAA CACCGCCCGCGC ACGTG GCG-AGGCGGTG CTGGCGGAAAACGCG TERM 1079 1279215 - 1279186 - R 100 -8.6 -5.252 | gap 1, overlap 1279173 GACGGCCACAAAAAA GCCGCCATGACCT GCGAG AGGTGA-GGCGGC CTGGATGAACGCCAC TERM 1080 1279360 - 1279380 + r 76 -5.4 -4.61566 | overlap 1279362 GATTTCGTACTCATC GGTTCCGA CTGTA TCGGAAGC TTTTGTGATTTGCAA Rpic_1192 1279979 - 1279515 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rpic_1193 1280968 - 1280075 - | polysaccharide deacetylase Rpic_1194 1282062 - 1281004 - | NAD-dependent epimerase/dehydratase Rpic_1195 1283020 - 1282079 - | formyl transferase domain protein TERM 1081 1283002 - 1282990 - G 82 -6.9 -4.70659 | opp_overlap 1282990, overlap 1282994 TGTGATACGCAAAAA CGACG GCG CGCCG CTTGATGTCGGAACT Rpic_1196 1284012 - 1283017 - | glycosyl transferase family 2 Rpic_1197 1285180 - 1284020 - | Glutamine--scyllo-inositol transaminase Rpic_1198 1285592 - 1285221 - | small multidrug resistance protein Rpic_1199 1287389 - 1285719 - | glycosyl transferase family 39 Rpic_1200 1287774 - 1287394 - | protein of unknown function DUF498 Rpic_1201 1288073 - 1289314 + | aminotransferase class I and II TERM 1082 1289341 - 1289370 + F 100 -10 -5.58209 | opp_overlap 1289317 1289341, overlap 1289343 CGCCAGATCAGTAAT TGCGGGGCAGAC CGAGGT GTCTGCCCTGTG TTTTTTTGCCTTTCG TERM 1083 1289343 - 1289368 + F 100 -12.6 -4.41528 | opp_overlap 1289317 1289341, overlap 1289341 CCAGATCAGTAATTG CGGGGCAGAC CGAGGT GTCTGCCCTG TGTTTTTTTGCCTTT TERM 1084 1289982 - 1289968 - g 70 -11.4 -3.33815 | ACGGTGCTCAAGGAA GCCCAG CGC CTGGGC TACGCTGAAGCCGAT Rpic_1202 1289413 - 1290732 + | Homoserine dehydrogenase TERM 1085 1291473 - 1291452 - g 71 -12.3 -3.18681 | gap 1, opp_overlap 1291451 1291449 GGTCAACTCGATCAA CTGGGCG-CG CGT CGTCGCCCAG GTCGTCTACTACTTC Rpic_1203 1290748 - 1292193 + | threonine synthase TERM 1086 1292459 - 1292481 + G 79 -4 -4.8622 | overlap 1292461 TTTTATGCCGACCGG CGCATCGCCG TGG TGCCGATGGG TTTTTGCTTCCCGGG Rpic_1204 1292198 - 1292815 + | Uracil-DNA glycosylase superfamily TERM 1087 1293809 - 1293823 + G 76 -2.7 -4.87291 | opp_overlap 1293804, overlap 1293804 1293810 CCCGAAGGCATGGTG GGCGG CCCCA CCGCA TTTTTCATTGGGCTG Rpic_1205 1292897 - 1294156 + | molybdenum cofactor synthesis domain protein Rpic_1206 1294169 - 1294426 + | molybdopterin converting factor, subunit 1 Rpic_1207 1294443 - 1294964 + | molybdopterin biosynthesis MoaE protein Rpic_1208 1294980 - 1295360 + | CrcB protein TERM 1088 1297100 - 1297090 - g 72 -8.2 -3.94877 | ACTCGTCAACAACAA CGCC CAG GGCG GCCCGACGCGCAGCA TERM 1089 1297624 - 1297585 - g 76 -13.6 -3.14931 | gap 1, overlap 1297616 TGCACCGGCCATCAA CGCGGCCAACGTGC-CG AACTTCA CGAGCACACCGGCCGCG GGCGACCGCATCTCG Rpic_1209 1295507 - 1297684 + | putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane TERM 1090 1297719 - 1297747 + F 100 -16 -4.30719 | gap 1, overlap 1297746 TTGACGCACTTGGGA CGGCGGCGTGGCC TGCA GGC-GCGCCGCCG TTTGTTCTGGCGCAA TERM 1091 1298850 - 1298827 - g 70 -8 -3.96188 | overlap 1298830 AAGTACATCGAGAAA GACGCCGCGC TGGA GCGCCGCTTC CAGAAGGTGCTCGTG Rpic_1210 1297855 - 1300443 + | ATP-dependent chaperone ClpB TERM 1092 1300467 - 1300489 + F 100 -14.9 -6.41881 | opp_overlap 1300467 CTGGGCTTCAAAGAA CCGCTCTGG TTTTT CCAGAGCGG TTTTTTTTTGTTCTG TERM 1093 1300489 - 1300467 - f 93 -14.9 -3.90744 | opp_overlap 1300467 CTGGGCTTCAAAGAA CCGCTCTGG TTTTT CCAGAGCGG TTTTTTTTTGTTCTG Rpic_1211 1300726 - 1301745 + | sulfate ABC transporter, periplasmic sulfate-binding protein Rpic_1212 1301783 - 1302406 + | NADPH-dependent FMN reductase Rpic_1213 1302524 - 1303516 + | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein TERM 1094 1303729 - 1303743 + G 72 -11.4 -3.53012 | opp_overlap 1303725 GTCAAAGAGAACCGG GCGCTG GAG CAGCGC TTTCCGGGCACCAAG Rpic_1214 1303522 - 1304553 + | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Rpic_1215 1304597 - 1305760 + | Alkanesulfonate monooxygenase Rpic_1216 1305779 - 1306591 + | binding-protein-dependent transport systems inner membrane component Rpic_1217 1306611 - 1307450 + | ABC transporter related Rpic_1218 1307521 - 1307736 + | TOBE domain protein Rpic_1219 1307777 - 1308661 + | diguanylate phosphodiesterase Rpic_1220 1308672 - 1309346 + | protein of unknown function DUF1234 TERM 1095 1309420 - 1309446 + F 100 -10 -4.87665 | overlap 1309421 GGTTCATCTGCATAT CGGCCGCAGTGT TTT GCTCTGCGGCCA TTTTTATCGGTGCGC TERM 1096 1309421 - 1309445 + F 86 -13.5 -3.52117 | overlap 1309420 GTTCATCTGCATATC GGCCGCAGTGT TTT GCTCTGCGGCC ATTTTTATCGGTGCG TERM 1097 1309520 - 1309544 + G 78 -7.7 -4.34267 | overlap 1309510 GCCCGCCAACGTGCT GCCCGGCTTCG GGC TGGCGCTGGGC TTTTCGCTTCTGTAC Rpic_1221 1309464 - 1310378 + | sulfate ABC transporter, inner membrane subunit CysT TERM 1098 1310841 - 1310877 + G 73 -9.4 -3.89215 | overlap 1310840 1310842 CAAGGTCATCTTTGC TGTGCCGGGCATCGTG CTGGC CACGGTGTTCGTCACG TTTCCGTTTGTGGCG Rpic_1222 1310380 - 1311360 + | sulfate ABC transporter, inner membrane subunit CysW Rpic_1223 1311357 - 1312466 + | sulfate ABC transporter, ATPase subunit Rpic_1224 1312507 - 1313466 + | transcriptional regulator, LysR family TERM 1099 1313534 - 1313553 + F 81 -13.6 -3.29471 | TTCGTCGCATACGCA TGGCGCCT GCCC AGGCGCCA TTCCTATACTGCGGA Rpic_1225 1313595 - 1313906 + | putative transmembrane protein Rpic_1226 1313906 - 1315174 + | integral membrane sensor signal transduction histidine kinase Rpic_1227 1315178 - 1316011 + | two component transcriptional regulator, LytTR family TERM 1100 1317437 - 1317461 + G 73 -12.1 -3.41693 | TCAGCCCCGACACGC CCGTCATCTGC ATG GCCGGTGACGG TTGCTTCCTGATGAA Rpic_1228 1316080 - 1317807 + | thiamine pyrophosphate protein domain protein TPP-binding TERM 1101 1318251 - 1318240 - g 86 -3.6 -5.15167 | GAGCATCAAGAAAAA CGCC GGGC AGCG CGAAGTCGGCGTGCA Rpic_1229 1317854 - 1318351 + | regulator of ribonuclease activity A Rpic_1230 1318348 - 1318770 + | AIG2 family protein TERM 1102 1318792 - 1318813 + F 74 -13 -3.23853 | overlap 1318790 1318807 TTTTGAGGGGGAGGG GCGCGCGA TATAAT TCGCGCGC TGTTCATTCGAGCAG Rpic_1231 1319079 - 1319378 + | hypothetical protein TERM 1103 1319409 - 1319424 + F 100 -11.8 -5.24129 | CTTCACCATCCCGAA CGCCGC ACCT GCGGCG TTTTTTGTGGCACCG TERM 1104 1320941 - 1320920 - g 72 -8.7 -4.08692 | CAAGGCGGCGGAAAA GGGCTTCAC CGCG GTGAAGCAC CAGCGCGAAGTCGGC Rpic_1232 1319775 - 1321079 + | isocitrate lyase TERM 1105 1321147 - 1321168 + T 100 -6.5 -6.31682 | CGCCGGCCTCTCGAA CCGCGCT TCCTCAAC GGCGCGG TTTTTTTTTCGTTTT TERM 1106 1321226 - 1321198 - T 100 -6.7 -5.60993 | gap 1, opp_overlap 1321203, overlap 1321200 1321203 TGGCTGATAAAAAAA GAGAAGCCGCCC GGGGCG GGGCGGCTTG-C GTAGCGTGAGCGCCG TERM 1107 1321225 - 1321200 - T 89 -10.4 -4.45201 | opp_overlap 1321203, overlap 1321198 1321203 GCTGATAAAAAAAGA GAAGCCGCCC GGGGCG GGGCGGCTTG CGTAGCGTGAGCGCC TERM 1108 1321203 - 1321222 + T 72 -12.1 -3.06796 | opp_overlap 1321200 1321198 1321203 GATAAAAAAAGAGAA GCCGCCC GGGGCG GGGCGGC TTGCGTAGCGTGAGC TERM 1109 1321222 - 1321203 - T 100 -12.1 -4.31185 | opp_overlap 1321203, overlap 1321200 1321198 GATAAAAAAAGAGAA GCCGCCC GGGGCG GGGCGGC TTGCGTAGCGTGAGC Rpic_1233 1321682 - 1321248 - | UspA domain protein Rpic_1234 1322696 - 1321767 - | transcriptional regulator, LysR family TERM 1110 1321887 - 1321847 - G 76 -2.3 -4.97402 | overlap 1321849 1321884 GAAAATCGATAAAAA GACGCACGCGCAGCGGCAG ATG CTTGCGCTGCGGAAACACC GCATGGATGCCAATC Rpic_1235 1322915 - 1323613 + | haloacid dehalogenase, type II Rpic_1236 1323699 - 1325279 + | malate synthase A TERM 1111 1325432 - 1325456 + F 100 -11.4 -5.37593 | gap 1, opp_overlap 1325432 AGTGCGCAACGGAAA CGCCGGTTGGG GCAA CCCG-CCGGCG TTTTTTCATTTGGCG TERM 1112 1325456 - 1325432 - f 71 -9.2 -3.75332 | gap 1, opp_overlap 1325432 AGTGCGCAACGGAAA CGCCGGTTGGG GCAA CCCG-CCGGCG TTTTTTCATTTGGCG Rpic_1237 1325523 - 1325993 + | Domain of unknown function DUF1857 TERM 1113 1326003 - 1326034 + F 100 -22.3 -3.84825 | GGCTGACGTGTCTTG CCCGGCCGGCGCT GGAGGA GGCGCCGGCCGGG TTTGCTCTGCCTGCA Rpic_1238 1326084 - 1327541 + | drug resistance transporter, EmrB/QacA subfamily TERM 1114 1327562 - 1327546 - T 100 -10.8 -5.46657 | opp_overlap 1327546 CAGCGCAATAAAAAA CCGGGC ACGGG GCCCGG TTCTTCGTTGGCGAT TERM 1115 1327546 - 1327562 + T 76 -10.8 -3.81414 | opp_overlap 1327546 CAGCGCAATAAAAAA CCGGGC ACGGG GCCCGG TTCTTCGTTGGCGAT TERM 1116 1327608 - 1327630 + T 74 -6.2 -4.45664 | overlap 1327611 TTGCGCCGCTCTTCA GTTCTTCGAC GAG GTCGACGTAC TTTTGCTTGGCTTCG Rpic_1239 1327854 - 1327585 - | acyl-coA-binding protein ACBP Rpic_1240 1328028 - 1328768 + | peptidase M22 glycoprotease Rpic_1241 1328765 - 1329292 + | ribosomal-protein-alanine acetyltransferase Rpic_1242 1329289 - 1330083 + | phage SPO1 DNA polymerase-related protein Rpic_1243 1331427 - 1330111 - | major facilitator superfamily MFS_1 TERM 1117 1331869 - 1331894 + H 100 -12.5 -4.55697 | opp_overlap 1331867 TATATCATGAAACTT GTGCGCTTCCG GTGA CGGCGGCGCAC TTTCTTTCTGAGCAT TERM 1118 1332480 - 1332451 - g 71 -12.1 -3.25341 | gap 1, overlap 1332449 AGCTCAAGATCAATA CGGGCATGA-GCCG ACT CGGCTTCGCGCCCG CCGCCTACCGCGCCG Rpic_1244 1332075 - 1333199 + | alanine racemase Rpic_1245 1333268 - 1334638 + | DNA repair protein RadA Rpic_1246 1334749 - 1335228 + | Disulphide bond formation protein DsbB Rpic_1247 1335245 - 1335646 + | hypothetical protein Rpic_1248 1336860 - 1335754 - | L-carnitine dehydratase/bile acid-inducible protein F Rpic_1249 1338829 - 1336892 - | ABC transporter related TERM 1119 1338576 - 1338612 + g 71 -9.3 -3.72695 | overlap 1338553 1338577 CGGGTATCGCCGTCG AGCGTGTAGTCGAGCGC GCT GCGGTCGACTGCGGGCG TTTCCTGCGCCACGT Rpic_1250 1339070 - 1340059 + | transcriptional regulator, RpiR family Rpic_1251 1340077 - 1341039 + | peptidase T2 asparaginase 2 TERM 1120 1341621 - 1341649 + G 71 -9.5 -3.72695 | overlap 1341617 1341640 ACTGTCGGGCGGCAT GCGCCAGCGCG TGATGAT TGCGATGGCGC TTTCATGCAAACCGT Rpic_1252 1341079 - 1342968 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Rpic_1253 1343018 - 1344571 + | extracellular solute-binding protein family 5 Rpic_1254 1344641 - 1345564 + | binding-protein-dependent transport systems inner membrane component Rpic_1255 1345575 - 1346474 + | binding-protein-dependent transport systems inner membrane component Rpic_1256 1346485 - 1347510 + | peptidase S58 DmpA TERM 1121 1347642 - 1347681 + G 71 -14.2 -2.73542 | gap 1, overlap 1347625 GCCGAAGCCGACGCC GC-CGTCCGCGGTGCCTTC GAC GGTGGCGCCACGGACGTGC TCGTTAACGATTCGC TERM 1122 1347948 - 1347986 + G 72 -13.1 -3.14132 | gap 1 GCCCTGGCCGGGGAG CGCGGCGT-GCCGGTGGC CGTT GCCAGCGGCGACGACGTG TTCATCAAGGAAACC Rpic_1257 1347519 - 1348334 + | peptidase M55 D-aminopeptidase TERM 1123 1348810 - 1348783 - g 86 -10.4 -4.24002 | overlap 1348775 TTCCAAAGCCGAAAA GGCGGCCGCCGC ACTG GCCAAGGCCGCC GCAGAGTTCAAATGC Rpic_1258 1348670 - 1349029 + | chitin binding Peritrophin-A Rpic_1259 1349860 - 1349069 - | metal-binding integral membrane protein-like protein Rpic_1260 1350501 - 1349857 - | protein of unknown function DUF1326 Rpic_1261 1351729 - 1350827 - | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific Rpic_1262 1352263 - 1351745 - | adenylate cyclase Rpic_1263 1353435 - 1352275 - | succinyl-diaminopimelate desuccinylase Rpic_1264 1353811 - 1353467 - | arsenate reductase and related Rpic_1265 1354239 - 1353826 - | putative transmembrane protein Rpic_1266 1355127 - 1354300 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Rpic_1267 1356373 - 1355174 - | aminotransferase class I and II TERM 1124 1356483 - 1356498 + H 100 -11.8 -5.8187 | overlap 1356460 CGACAATGCTGCATG CGGCGG ATTT CCGCCG TTTTTTTATTGCGTA TERM 1125 1356670 - 1356724 + G 79 -10.7 -4.14392 | CAGCATGCTGGCCTC GTCGATGACG-GGCGCGGCTGCGGCCG TCC TGGCCGCCGTGGTGCTGCGTCGTC-AC TTTTCGACGTTCCAG Rpic_1268 1356515 - 1357435 + | protein of unknown function DUF6 transmembrane Rpic_1269 1357473 - 1358519 + | alpha/beta hydrolase fold TERM 1126 1360918 - 1360869 - g 76 -9.3 -4.1899 | gap 3, overlap 1360870 CCAGGCCAGCCAAAA CCT-CACGCAGGTGCG-GGCCCGC GCCGA GCAGGCCACGCGCC-GCGTGCACG TGCTGCAGATGGACG TERM 1127 1361709 - 1361655 - g 71 -9.9 -3.72324 | opp_overlap 1361685 CACGCGCATCAACAA CGCCATCAACGCGCTCG-GCCCGGTCA ACA TGGCCGCGCTCGA-CGAGCTGGCGGCG GCGCGCGAGCGCAAG Rpic_1270 1358770 - 1362285 + | chromosome segregation protein SMC Rpic_1271 1362286 - 1363500 + | ZipA FtsZ-binding region TERM 1128 1363571 - 1363529 - g 90 -15.5 -3.73872 | gap 1, overlap 1363553 1363555 1363556 AGCAAGACTGAAGAA CCCGCGTC-CGGACCGCCCT CAAA AGACCGGCCCGAGGCGCGGG CAGCCTGGCTGCGCG TERM 1129 1365659 - 1365679 + G 71 -12.5 -3.18582 | GCGCAACTGGCGAAG CTCGACGCG CTG CGCGGCGAG TTGCTCGCTGCCATG Rpic_1272 1363511 - 1365964 + | DNA ligase, NAD-dependent Rpic_1273 1365961 - 1366494 + | peptide deformylase Rpic_1274 1366563 - 1367684 + | putative transmembrane protein TERM 1130 1367705 - 1367737 + T 95 -11.3 -4.55295 | opp_overlap 1367708, overlap 1367708 ACAGCGGGCACAAAA AAACCGGTCAGCGTG CAA TGCGTTGACCGGTTC TTTCTTTGTGGCAGA TERM 1131 1367708 - 1367734 + T 100 -13 -4.38748 | opp_overlap 1367708, overlap 1367705 GCGGGCACAAAAAAA CCGGTCAGCGTG CAA TGCGTTGACCGG TTCTTTCTTTGTGGC TERM 1132 1367734 - 1367708 - T 100 -9.4 -5.60993 | opp_overlap 1367705 1367708 GCGGGCACAAAAAAA CCGGTCAGCG TGCAATG CGTTGACCGG TTCTTTCTTTGTGGC Rpic_1275 1369784 - 1367760 - | RNA-binding S4 domain protein TERM 1133 1369143 - 1369110 - G 72 -11 -3.53012 | gap 1, opp_overlap 1369096 1369120 1369141 GCGCTCTTCGTCAAA GCGTCGCGGAGGGCG TTGGT CGCCATC-ACGACGC GGCGCGCGTTGATCG Rpic_1276 1372356 - 1369768 - | UTP-GlnB uridylyltransferase, GlnD TERM 1134 1369991 - 1370022 + g 71 -9.4 -3.72695 | gap 1 AGCAGGTAATACTGG CCGCGC-TCGTCC GCCCGCA GGTCGACGCGCGG TTTGATCGGGAAGCT TERM 1135 1370295 - 1370283 - G 81 -7.7 -4.57837 | overlap 1370286 AGATGCGCGCAAAAA GATCG GGC CGATC CGGCGAGTACACAGC TERM 1136 1372401 - 1372376 - R 95 -16.2 -3.91084 | GGAGCGTGAATGAAA CAGCGACCGG AATGAG CCGGTCGCTG CAGGGGTTGAGCCGG Rpic_1277 1373299 - 1372475 - | methionine aminopeptidase, type I TERM 1137 1373529 - 1373539 + H 85 -6.8 -4.80882 | overlap 1373523 AATCGCGAGCCGCTT CACC GCG GGTG TTTTTCGTATCGCAT Rpic_1278 1373604 - 1374347 + | ribosomal protein S2 TERM 1138 1374437 - 1374457 + F 100 -6.8 -5.82388 | opp_overlap 1374437 GCTGATGGCCAGACA GGGGCG CGTAACAAA CGCCCC TTTTTTTTGAAATTT Rpic_1279 1374601 - 1375479 + | translation elongation factor Ts TERM 1139 1375514 - 1375539 + F 75 -13.9 -2.9162 | overlap 1375509 GATGGTGCGGCGATT CGCCCTCCGGC GCAG GCCGGGAGGCG TCGTTTCCACCATTG TERM 1140 1375580 - 1375601 + F 93 -15.9 -3.57144 | opp_overlap 1375580 1375593, overlap 1375593 1375593 ATAATGCCGAACAAA CAGGGCACC GAAA GGTGCCCTG TTTGCAGGTGCAGCC TERM 1141 1375601 - 1375580 - f 100 -15.9 -4.18702 | opp_overlap 1375580 1375593 1375593, overlap 1375593 ATAATGCCGAACAAA CAGGGCACC GAAA GGTGCCCTG TTTGCAGGTGCAGCC Rpic_1280 1375772 - 1376482 + | uridylate kinase Rpic_1281 1376659 - 1377219 + | ribosome recycling factor Rpic_1282 1377272 - 1378048 + | undecaprenyl diphosphate synthase Rpic_1283 1378052 - 1378870 + | phosphatidate cytidylyltransferase Rpic_1284 1378882 - 1380072 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1142 1380688 - 1380649 - g 77 -11.4 -3.79747 | gap 1, opp_overlap 1380647 GTACGGACGATGAAA CGCCTGCGCCCGTGCGC AGCTGGA GCG-ACGTGCGCATGCG CCTGTACTCGGCCGG Rpic_1285 1380159 - 1381547 + | membrane-associated zinc metalloprotease Rpic_1286 1381663 - 1383960 + | outer membrane protein assembly complex, YaeT protein Rpic_1287 1383960 - 1384511 + | outer membrane chaperone Skp (OmpH) TERM 1143 1384618 - 1384637 + G 71 -4.2 -4.54047 | opp_overlap 1384618, overlap 1384596 1384593 GCGCCGCTGGATCAA GCGGGC GCCGATCA GCTCGC TTTTCTCTCCAATCC TERM 1144 1384927 - 1384965 + G 85 -12.6 -4.15222 | gap 3, opp_overlap 1384921 ACCATCGAAGCCGGT GCTGT-GCTCGGCGA-GCG TGTG CGCATCGCCG-GCAACAGC TTTGTTGGCGCCGAT Rpic_1288 1384522 - 1385595 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Rpic_1289 1385592 - 1386095 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Rpic_1290 1386092 - 1386907 + | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase TERM 1145 1387163 - 1387145 - g 78 -13.2 -3.53811 | GCCAGTTGCGCGAAA TCCTTGCG ATC CGCAAGGA ACTCAAGCAGGACCT TERM 1146 1387857 - 1387881 + G 75 -9.9 -3.96148 | overlap 1387872 TCTGCCGTACGTTGG GCTGCCGAACA TCC TGTCCGGCCGC TTTGTCGTGCCGGAA Rpic_1291 1386949 - 1388082 + | lipid-A-disaccharide synthase Rpic_1292 1388087 - 1388785 + | Ribonuclease H Rpic_1293 1388808 - 1389590 + | tRNA/rRNA methyltransferase (SpoU) TERM 1147 1389580 - 1389597 + F 72 -2.5 -4.82154 | overlap 1389582 CCGTGCGACAACGCC GCGCGGG CTAA CCCTCTC TTTTTCCTGTCGATT Rpic_1294 1389733 - 1390608 + | hypothetical protein TERM 1148 1391310 - 1391273 - g 70 -14.1 -2.52623 | gap 1, opp_overlap 1391283, overlap 1391272 1391270 TCGTGTGGAGAAGAC CGCCATCGTGCCGCGCGC CAC GCAGACGGC-CGACGGCG TGCGCGGTGTGTCGC Rpic_1295 1390626 - 1392434 + | short-chain dehydrogenase/reductase SDR TERM 1149 1392785 - 1392817 + G 72 -12.7 -3.12668 | opp_overlap 1392775, overlap 1392771 ACCAAGCGGCTCGAC TGGCTGTTCTCCAAG GTG CTCGGCGAACAGCCG TTGGGTCTGAAGATC Rpic_1296 1392467 - 1393363 + | FF domain protein TERM 1150 1393418 - 1393388 - T 100 -17 -4.82901 | opp_overlap 1393388 1393393, overlap 1393393 CCGCCGGCAGAAAAA CAAAACGGCCGG TGCAATG CCGGCCGTTTTG TTTGCGGGGCGATTC TERM 1151 1393388 - 1393418 + T 100 -18.4 -3.53761 | opp_overlap 1393388 1393393, overlap 1393393 CCGCCGGCAGAAAAA CAAAACGGCCGGTG CAA TGCCGGCCGTTTTG TTTGCGGGGCGATTC TERM 1152 1393413 - 1393393 - T 100 -11.1 -5.35224 | opp_overlap 1393388 1393393, overlap 1393388 GGCAGAAAAACAAAA CGGCCGG TGCAATG CCGGCCG TTTTGTTTGCGGGGC TERM 1153 1393393 - 1393413 + T 100 -12.5 -4.86731 | opp_overlap 1393393 1393388, overlap 1393388 GGCAGAAAAACAAAA CGGCCGGTG CAA TGCCGGCCG TTTTGTTTGCGGGGC Rpic_1297 1394290 - 1393439 - | protein of unknown function DUF299 TERM 1154 1394478 - 1394495 + H 72 -2.5 -4.788 | GACAAGAAGAAAGCC CCGTGCG GATC CGACCGG TTTTTCACTTAGTTT Rpic_1298 1394521 - 1396908 + | phosphoenolpyruvate synthase TERM 1155 1397017 - 1397044 + F 100 -15.6 -5.63504 | gap 1 GGGCCGAGCGACATG CCCCCGCAGACGT CTA GCGTC-GCGGGGG TTTTTTTATGGGATT Rpic_1299 1397074 - 1397499 + | protein of unknown function DUF107 Rpic_1300 1397549 - 1398475 + | band 7 protein Rpic_1301 1398940 - 1398494 - | SsrA-binding protein TERM 1156 1399105 - 1399085 - g 79 -2.4 -5.04385 | CAGACGTTGAAAAAA CCGTGTTG ATTGG CCACTCGG CCGAACAGATGTTCG Rpic_1302 1399066 - 1399503 + | cyclase/dehydrase TERM 1157 1399576 - 1399618 + G 76 -14.2 -3.14344 | CGTCAACGTGCAAGT GCCGG-CGCAGGCGACGGTG GCTGA CGCCGT-GCATGCGTCCGGC TTGCTCAACGGCCTG TERM 1158 1399774 - 1399752 - g 91 -10.6 -4.65895 | overlap 1399753 1399754 TCGCCGATCCAAAAA CTGCACGC CGGCGGC GCGTGCAG AAGGTGCGGGCCACC Rpic_1303 1399490 - 1399855 + | protein of unknown function UPF0125 Rpic_1304 1400402 - 1399863 - | putative transmembrane protein Rpic_1305 1401501 - 1400557 - | putative transmembrane protein TERM 1159 1401011 - 1400997 - G 72 -8.5 -4.13945 | ACGTCCAGCTGAAAA GCGCG CCTGC CGCGC AAGCGATGCCAACAA TERM 1160 1401437 - 1401421 - G 76 -9.3 -4.11216 | TTCCCACGGTGAAAA CGCGGGC AGC GCGCGCG GAGCAATAAAGACCA Rpic_1306 1401656 - 1403119 + | inosine-5'-monophosphate dehydrogenase Rpic_1307 1403250 - 1403828 + | putative transmembrane protein Rpic_1308 1403803 - 1405422 + | GMP synthase, large subunit TERM 1161 1405463 - 1405447 - T 73 -10.8 -3.65314 | opp_overlap 1405447 GCCAAGTCGGAAGAA GCCCGC GTTAT GCGGGC TTTTTTTCGTCCTTG TERM 1162 1405447 - 1405463 + T 100 -11.5 -5.58074 | opp_overlap 1405447 GCCAAGTCGGAAGAA GCCCGCG TTA TGCGGGC TTTTTTTCGTCCTTG Rpic_1309 1405736 - 1405524 - | hypothetical protein Rpic_1310 1406004 - 1406207 + | cold-shock DNA-binding domain protein TERM 1163 1406232 - 1406246 + T 100 -12.8 -5.86061 | opp_overlap 1406232 TCTGCCAAGAAAAAA CCCCGC ACT GCGGGG TTTTTTTTCGTAGCA TERM 1164 1406246 - 1406232 - T 100 -12.8 -5.4505 | opp_overlap 1406232 TCTGCCAAGAAAAAA CCCCGC ACT GCGGGG TTTTTTTTCGTAGCA TERM 1165 1406359 - 1406345 - T 71 -7.8 -4.08706 | GCGGCATCACATAAA CGGCAA CCG CTGCCG AAAGCCCCGTAGCGC Rpic_1311 1407021 - 1406377 - | hypothetical protein Rpic_1312 1408278 - 1407058 - | hypothetical protein TERM 1166 1407422 - 1407434 + g 71 -9.1 -3.73775 | ATCTCTACGCGCAAG CGCAC GCG GTGCG TTTCGTCGGGATGCC Rpic_1313 1408365 - 1409135 + | protein of unknown function DUF899 thioredoxin family protein Rpic_1314 1409110 - 1409883 + | hypothetical protein Rpic_1316 1410279 - 1411667 + | sodium:dicarboxylate symporter TERM 1167 1411708 - 1411689 - T 76 -5.6 -4.58585 | opp_overlap 1411689 CATCGAAATAAGAAA TGCCGGCC ATGG AGTCGGCA TTTTTTTTTTGAGCG TERM 1168 1411689 - 1411708 + T 100 -7.1 -6.34424 | opp_overlap 1411689 CATCGAAATAAGAAA TGCCGGC CATGGA GTCGGCA TTTTTTTTTTGAGCG Rpic_1317 1412677 - 1411733 - | transcriptional regulator, LysR family Rpic_1318 1412771 - 1413520 + | protocatechuate 3,4-dioxygenase, beta subunit Rpic_1319 1413520 - 1414215 + | protocatechuate 3,4-dioxygenase, alpha subunit TERM 1169 1414272 - 1414236 - f 74 -13 -3.13299 | gap 1, opp_overlap 1414238 1414241, overlap 1414234 1414238 1414241 GCATCACATCCAAGA GACCACGCCCGGCAGGT TCAC ACC-GCCGGGCGTTGTT TTTGATGCAAGCAAC TERM 1170 1414270 - 1414238 - f 83 -15.6 -3.1241 | gap 1, opp_overlap 1414238 1414241, overlap 1414236 1414234 1414241 ATCACATCCAAGAGA CCACGCCCGGCAGGT TCAC ACC-GCCGGGCGTTG TTTTTGATGCAAGCA TERM 1171 1414238 - 1414270 + F 100 -15.6 -4.72272 | gap 1, opp_overlap 1414238 1414236 1414234 1414241, overlap 1414241 ATCACATCCAAGAGA CCACGCCCGGCAGGT TCAC ACC-GCCGGGCGTTG TTTTTGATGCAAGCA TERM 1172 1414267 - 1414241 - f 79 -15.9 -2.76589 | gap 1, opp_overlap 1414238 1414241, overlap 1414238 1414236 1414234 ACATCCAAGAGACCA CGCCCGGCAGGT TCAC ACC-GCCGGGCG TTGTTTTTGATGCAA TERM 1173 1414241 - 1414267 + F 100 -15.9 -4.47707 | gap 1, opp_overlap 1414241 1414238 1414236 1414234, overlap 1414238 ACATCCAAGAGACCA CGCCCGGCAGGT TCAC ACC-GCCGGGCG TTGTTTTTGATGCAA TERM 1174 1414670 - 1414687 + G 70 -7.7 -3.99324 | gap 1, overlap 1414667 GTGAGCTTCCATGGC CGGCGCGA TCA TCG-GCCG TTTGTGCTGCTGGGC Rpic_1320 1414277 - 1414945 + | 2'-5' RNA ligase Rpic_1321 1415652 - 1414957 - | hypothetical protein Rpic_1322 1416559 - 1415678 - | beta-lactamase domain protein Rpic_1323 1416669 - 1417571 + | transcriptional regulator, LysR family Rpic_1324 1418775 - 1417564 - | major facilitator superfamily MFS_1 TERM 1175 1417696 - 1417675 - G 77 -11.5 -3.78934 | overlap 1417686 1417687 CTTGTCCCACAACAA GCCCGCCAG AACG CTGGCGGCC AACATCGCCAGTCCG TERM 1176 1418364 - 1418339 - G 77 -12.5 -3.57144 | gap 1 TGCCGCAGCCCGAAA GCCGCGCC-GCG CAG CGCAGGCGGGGC AATGTCGGCGACCAA Rpic_1325 1419632 - 1418805 - | hypothetical protein TERM 1177 1419584 - 1419611 + g 70 -2 -4.71061 | opp_overlap 1419574 CGAAGGTGCCGCTGC GTTCGTGC AGTACGCGGAAG GCACGAGC TTTTTCGATCTGGGT Rpic_1326 1420334 - 1419636 - | DSBA oxidoreductase Rpic_1327 1421344 - 1420400 - | transcriptional regulator, LysR family TERM 1178 1422005 - 1422032 + G 71 -10.6 -3.63515 | CTGGGTGACGGCGCT GGTCGTCATGGC GGTG GTCATGGCGATC TTCTTGCCGCTGACC TERM 1179 1422116 - 1422139 + G 75 -4.4 -4.68593 | gap 1, overlap 1422110 CATGGGTTCGGCCAT CCGC-GAGGCC TTT GCCCACCGCGG TTTTTGGCTGCTGAA Rpic_1328 1421493 - 1422710 + | major facilitator superfamily MFS_1 Rpic_1329 1422957 - 1423595 + | hypothetical protein Rpic_1330 1423674 - 1424150 + | queuosine biosynthesis protein QueD Rpic_1331 1424170 - 1424718 + | CMP/dCMP deaminase zinc-binding Rpic_1332 1424715 - 1425641 + | Muramoyltetrapeptide carboxypeptidase TERM 1180 1426515 - 1426480 - g 80 -14.6 -3.14944 | overlap 1426475 GACGACTACATGCAA GCCTCCCTGCAGGCGC GCGA GCGCCTGCAGGCCGCC AACGCCCGGGCCAAG Rpic_1333 1425694 - 1427376 + | ABC transporter related TERM 1181 1427402 - 1427422 + F 100 -6.1 -6.06723 | gap 1, opp_overlap 1427402 1427403, overlap 1427403 TTTGCCGTAGCCAAA G-GGCCGC CGATGT GCGGCCTC TTTTTTTTTCGGGCG TERM 1182 1427403 - 1427420 + F 89 -9.8 -4.69028 | opp_overlap 1427403 1427402, overlap 1427402 TTGCCGTAGCCAAAG GGCCGC CGATGT GCGGCC TCTTTTTTTTTCGGG Rpic_1334 1427617 - 1428240 + | hypothetical protein TERM 1183 1428315 - 1428342 + F 100 -14.9 -4.87626 | opp_overlap 1428318, overlap 1428319 ATTCTTTGCCGTCAT CAAGGGGCCGC CAATGT GCGGCCCTTTG TTTTTGGTCTTCGCC TERM 1184 1428319 - 1428338 + F 100 -12.1 -4.95618 | opp_overlap 1428318, overlap 1428315 TTTGCCGTCATCAAG GGGCCGC CAATGT GCGGCCC TTTGTTTTTGGTCTT Rpic_1335 1428563 - 1430110 + | succinate CoA transferase Rpic_1336 1431023 - 1430130 - | transcriptional regulator, LysR family TERM 1185 1431194 - 1431168 - R 100 -13.8 -4.4009 | opp_overlap 1431172, overlap 1431172 CGGCACTCGACAAAA GAAAGGCGGC TCATGCG GCCGCCTTTC ATGCAGTCCGGCATA TERM 1186 1431190 - 1431172 - R 100 -8.8 -4.77775 | opp_overlap 1431172, overlap 1431168 ACTCGACAAAAGAAA GGCGGC TCATGCG GCCGCC TTTCATGCAGTCCGG TERM 1187 1431172 - 1431190 + r 71 -9.5 -3.74693 | opp_overlap 1431168 1431172 ACTCGACAAAAGAAA GGCGGCT CATGC GGCCGCC TTTCATGCAGTCCGG Rpic_1337 1431733 - 1431218 - | putative proline-rich protein TERM 1188 1432005 - 1432047 + G 71 -9.7 -3.76402 | opp_overlap 1432004, overlap 1432006 CATTCCCGAAGGCAG CGCGGC-CGACGCGGAAGCCG CCG TGGCCGCCGCG-CGCGCCGCA TTTGATGACTGGGCT Rpic_1338 1431886 - 1433322 + | Aldehyde Dehydrogenase TERM 1189 1433352 - 1433367 + T 100 -11.8 -5.22039 | opp_overlap 1433346 1433352 AGCACCAATGAAAAA CCCGGC CTCG GCCGGG TTTTTTGCGTTTGAC TERM 1190 1433367 - 1433352 - T 100 -11.8 -4.90869 | opp_overlap 1433352, overlap 1433346 AGCACCAATGAAAAA CCCGGC CTCG GCCGGG TTTTTTGCGTTTGAC Rpic_1339 1433652 - 1433392 - | protein of unknown function DUF1289 Rpic_1340 1435565 - 1433694 - | glycoside hydrolase 15-related TERM 1191 1435016 - 1435006 - G 70 -2.4 -4.65895 | TCGCTCACGGAAAAA TCCG CTA CGGT GGAGAGATTTTCGCC Rpic_1341 1435603 - 1436850 + | hypothetical protein Rpic_1342 1436929 - 1438059 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1192 1438066 - 1438089 + F 79 -8.8 -4.24204 | GACGGGTGATGTGAC GGCGGCAGGT TCAG GCTTGTCGCC TTTTCCCTATCCATG TERM 1193 1438180 - 1438204 + F 75 -8.5 -4.26019 | GCTTGGTCCGGCATT GTGTGTCGGCA TCC TGCCCGCACGC TTTTCGGTGTCGTTC TERM 1194 1438337 - 1438356 + F 93 -7.8 -4.92239 | opp_overlap 1438337 CTTCCGCTCTTCAAA TCCGCCCG CGCC TGGGTGGA TTTTTCGGTTTTTAG Rpic_1343 1438515 - 1439462 + | Fimbrial protein Rpic_1345 1441249 - 1441716 + | hypothetical protein Rpic_1346 1442457 - 1441735 - | MgtC/SapB transporter Rpic_1347 1443660 - 1442557 - | Male sterility domain TERM 1195 1443525 - 1443509 - G 75 -7.9 -4.27316 | TGTGCGAATTCAAAA CGCCGCA GGT TGCTGCG CAGCCGCGCCACCCC TERM 1196 1443644 - 1443632 - G 71 -9.1 -3.73224 | GCACCGCCCACGAAA CCGGT GGC ACCGG TCAGCAAAATACTCA Rpic_1348 1444969 - 1443938 - | protein of unknown function DUF182 TERM 1197 1444925 - 1444938 + g 71 -8.1 -4.11484 | CCGCCCTTGTTCTAG CCAGC GAAC GCTGG TTTTCAAGACTTCAA Rpic_1349 1445701 - 1445027 - | carbon monoxide dehydrogenase subunit G TERM 1198 1445201 - 1445244 + g 73 -13.9 -2.87132 | gap 1 AATCGCCTGTGTGGC CGGCATGCCGTCGACCGGCA CGGCA TGTCCGTCGACGCCA-GCCG TCTCTGCGGGGCCGA Rpic_1350 1446924 - 1445692 - | VWA containing CoxE family protein TERM 1199 1446547 - 1446511 - G 72 -8.6 -4.07568 | gap 1 CTCGTTGGCGGAAAA CGCCAGCG-GCGCCACG ACGT CATGGCGTTCGCCGTCG GGCTTGGGGCCAGGC Rpic_1351 1447824 - 1446928 - | ATPase associated with various cellular activities AAA_5 TERM 1200 1447179 - 1447148 - G 70 -5 -4.38154 | gap 1, opp_overlap 1447164, overlap 1447119 1447149 AGACGGTGCACAAAA TCGACCGCGCG-CTG CTG CAGGCGGGCAGCCGT CTCGGGCGCGCGCTG TERM 1201 1447407 - 1447384 - G 80 -5.2 -4.72986 | gap 1, opp_overlap 1447397 CAGCTCCAGCAAAAA CGCCTCGAACG GTT CGTCCGCG-CG GTCGATCTCATCGAT Rpic_1352 1448651 - 1447845 - | molybdopterin dehydrogenase FAD-binding Rpic_1353 1451044 - 1448666 - | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 1202 1449936 - 1449955 + g 80 -12.2 -3.75629 | overlap 1449909 1449913 TACGCATCGACGGGC GCGGTGTT CGTG AACACCGC TTTCACTTCGGCATA Rpic_1354 1451591 - 1451064 - | (2Fe-2S)-binding domain protein TERM 1203 1451804 - 1451820 + r 76 -15.1 -2.52464 | opp_overlap 1451804 CGCAGAAATGACAAA GGGCCGG AAA CCGGCCC TCGATTGGCACCAGG TERM 1204 1451820 - 1451804 - R 100 -15.1 -4.17701 | opp_overlap 1451804 CGCAGAAATGACAAA GGGCCGG AAA CCGGCCC TCGATTGGCACCAGG Rpic_1355 1452137 - 1451961 - | hypothetical protein Rpic_1356 1452779 - 1452300 - | CreA family protein Rpic_1357 1453781 - 1452813 - | transcriptional regulator, LysR family Rpic_1358 1453843 - 1455396 + | major facilitator superfamily MFS_1 TERM 1205 1455413 - 1455442 + T 70 -4.1 -4.68511 | overlap 1455417 1455418 GGTGCTGTGGGCCGG GTGTTTCGTCCCC TGGC GGGGCCGACTTAC TTTCTTTGTCTTGCC Rpic_1359 1458705 - 1455670 - | glycosyl transferase family 51 Rpic_1360 1459720 - 1458809 - | transcriptional regulator, LysR family TERM 1206 1460524 - 1460512 - g 70 -4.7 -4.36914 | overlap 1460495 1460513 1460514 GGTGCGCGCAGAAAA CCGCG CCG CGCTG GAGCGCCTCGCCCGC Rpic_1361 1459832 - 1460941 + | muconate and chloromuconate cycloisomerase Rpic_1362 1460978 - 1461268 + | muconolactone delta-isomerase TERM 1207 1462121 - 1462109 - g 70 -4.7 -4.37092 | overlap 1462110 ACGTGGTTGATAAAA CCGGC GGC GCCGC ATTCGACCTCAAGAC Rpic_1363 1461304 - 1462239 + | catechol 1,2-dioxygenase Rpic_1364 1462268 - 1463626 + | Rieske (2Fe-2S) domain protein TERM 1208 1464015 - 1464035 + G 80 -12.5 -3.79251 | CACGATGTTCGTCAC CCTGCGCCG CGC CGGCGAAGG TTTCCTGATCGCATC Rpic_1365 1463623 - 1464111 + | benzoate 1,2-dioxygenase, small subunit Rpic_1366 1464147 - 1465175 + | oxidoreductase FAD/NAD(P)-binding domain protein Rpic_1367 1465172 - 1465954 + | short-chain dehydrogenase/reductase SDR TERM 1209 1466025 - 1466014 - f 74 -7.2 -4.35885 | ACCCAGCATAAGAAA GGCG CTCA CGCC TTCAAAAAAAACCCC TERM 1210 1466047 - 1466037 - f 100 -4.6 -5.75342 | CGCCTTCAAAAAAAA CCCC AAA GGAG ACCACCCATGCGTCA Rpic_1368 1466055 - 1467374 + | major facilitator superfamily MFS_1 Rpic_1369 1467388 - 1468584 + | benzoate transporter TERM 1211 1468618 - 1468603 - T 100 -11.8 -5.45802 | opp_overlap 1468598 1468603 GCTCCAAAACAAAAA CGGCGC CAAT GCGCCG TTTTGTCATGTGTGC TERM 1212 1468603 - 1468618 + T 95 -11.8 -4.53163 | opp_overlap 1468603, overlap 1468598 GCTCCAAAACAAAAA CGGCGC CAAT GCGCCG TTTTGTCATGTGTGC Rpic_1370 1468813 - 1468652 - | hypothetical protein TERM 1213 1468993 - 1468981 - H 84 -5.5 -4.93318 | CATAAGCCACAAAAA TCGCG CCT CGCAA AAATTTTTTCCCTGC Rpic_1371 1469199 - 1470614 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Rpic_1372 1470601 - 1471848 + | 8-amino-7-oxononanoate synthase Rpic_1373 1471850 - 1472557 + | dethiobiotin synthase Rpic_1374 1472595 - 1473113 + | putative lipoprotein transmembrane Rpic_1375 1473279 - 1473803 + | putative transmembrane protein TERM 1214 1473870 - 1473855 - T 89 -11.8 -4.28254 | opp_overlap 1473868 CGCCAATACGTAAAA CGGGCC CGAA GGCCCG CTCGCAAGGAGACGG Rpic_1376 1474108 - 1473899 - | protein of unknown function DUF1653 Rpic_1377 1474463 - 1474116 - | hypothetical protein TERM 1215 1474338 - 1474301 - G 72 -8.3 -4.07687 | gap 1, opp_overlap 1474306, overlap 1474302 ATTCGCCGCCGAAAA TGGCGTGGATGCCGGGCA TGT CGCGCGGC-TCCATGCCT TCAAATTCGGTAAAG Rpic_1378 1475540 - 1474545 - | pyruvate carboxyltransferase Rpic_1379 1476525 - 1475626 - | transcriptional regulator, LysR family TERM 1216 1476575 - 1476591 + H 83 -2.9 -5.21709 | overlap 1476549 1476550 CCTTTGGAGATGGCT CGCTTGA TTA TTTAGCG TTTTTTGGTCTGGCG Rpic_1380 1476681 - 1477886 + | L-carnitine dehydratase/bile acid-inducible protein F Rpic_1381 1477901 - 1479343 + | 3-isopropylmalate dehydratase, large subunit Rpic_1382 1479330 - 1479977 + | 3-isopropylmalate dehydratase, small subunit TERM 1217 1480501 - 1480480 - g 71 -7.9 -4.08064 | gap 1, opp_overlap 1480481 1480497, overlap 1480481 AACCTGGCCGGAAAA GGCGCGCGCC AAG GGCGC-CGGC TTCCTGCAATCCGGT TERM 1218 1480716 - 1480696 - g 71 -8.1 -4.07568 | GGCCGTGCGTGAAAA GCGCTGGAG CGC CACCGGCGC GGCAGGCAAGGGCGG Rpic_1383 1480034 - 1481371 + | major facilitator superfamily MFS_1 TERM 1219 1481398 - 1481417 + T 100 -16.4 -6.06723 | TACGGCACTTTGGCT GCGCGGCG AAAT CGCCGCGC TTTTTTTTTGAGAAG Rpic_1385 1482248 - 1481859 - | hypothetical protein TERM 1220 1482288 - 1482272 - H 72 -10.9 -3.28712 | opp_overlap 1482272 CTCTGCTCTTGACAA GGTTACG GCT CGTAACC TAGGTTACGGCCTGT Rpic_1386 1482365 - 1482565 + | hypothetical protein Rpic_1387 1482565 - 1482738 + | hypothetical protein Rpic_1388 1482738 - 1482848 + | hypothetical protein TERM 1221 1482895 - 1482943 + GF 82 -14.3 -3.17075 | GGATGTTGAGGCGGA GGTGGGCGGCTGTGCGGGCGCGC GGA GCGCGCACGGGCAGACGGACGCC TTCGCTTGCCCCCCG TERM 1222 1483927 - 1483907 - gf 78 -3.9 -4.74504 | overlap 1483908 ACGCCAACTGAAAAA GGAGCACCA CCA TGGCACTCA CCCAAACCTTCACTG Rpic_1389 1482848 - 1483945 + | replication initiation factor Rpic_1390 1483918 - 1484253 + | hypothetical protein Rpic_1391 1484250 - 1484465 + | hypothetical protein Rpic_1392 1484480 - 1484728 + | hypothetical protein TERM 1223 1484749 - 1484773 + F 100 -13.6 -4.8622 | gap 1 GTCACCGTCGTGACA GGGGCGCC-AG CAGC CTAGGCGCCCC TTTTTCGTTAACGAA Rpic_1393 1484799 - 1486208 + | hypothetical protein Rpic_1394 1486217 - 1486525 + | hypothetical protein Rpic_1395 1486522 - 1487577 + | Zonular occludens toxin Rpic_1396 1487994 - 1487698 - | hypothetical protein TERM 1224 1488132 - 1488146 + r 72 -12.8 -3.01924 | opp_overlap 1488132 1488131 1488129 CGTGGCATACAAGAC GCGGCG AGG CGCCGC TATTACCGAAGGATC TERM 1225 1488177 - 1488195 + r 74 -11.7 -3.53012 | opp_overlap 1488177 GCCAAGAAGAAAAAA CGCCTGC TAGAT GCAGGCG TTTCAAAGAGGGAGG TERM 1226 1488195 - 1488177 - R 100 -11.7 -5.64873 | opp_overlap 1488177 GCCAAGAAGAAAAAA CGCCTGC TAGAT GCAGGCG TTTCAAAGAGGGAGG TERM 1227 1488385 - 1488406 + r 95 -7.3 -5.45652 | opp_overlap 1488385 GGTCTACAAAGACAA CCACCAG CGTAAAAA CTGGTGG TTTTTTATTGCCCAT Rpic_1397 1489679 - 1488657 - | hypothetical protein TERM 1228 1488769 - 1488741 - G 71 -10.4 -3.57039 | gap 1 CAGCGAGAACCAGAA GCACTTACG-GCC ATGC GACACGTAAGTGC ACATGCCCTGCCAGT TERM 1229 1489711 - 1489741 + r 100 -11.2 -4.86385 | gap 1, opp_overlap 1489730 TCTATCGATGTTCAC GCCCTGG-GAGGT CTGCAA ACCTCGCCGGGGC TTTCTTTTTGGAACT TERM 1230 1489855 - 1489825 - R 76 -13.8 -3.07816 | opp_overlap 1489830 GTGTTAGTGATTCAA GTCTAGCGGCGCGC TGC GCGCGCCGCGTGCC GTCGCTGACGCTCCG Rpic_1398 1490632 - 1490138 - | HMG-I and HMG-Y DNA-binding domain protein Rpic_1399 1491866 - 1490718 - | Zonular occludens toxin TERM 1231 1491673 - 1491689 + g 71 -3.7 -4.57073 | overlap 1491670 ACCTTCTGTACCTCG TCGATGA CGA TGATCGA TTTTTCCGGGCACTC Rpic_1400 1492194 - 1491874 - | ABC-type Co2+ transport system, permease component Rpic_1401 1493661 - 1492195 - | hypothetical protein TERM 1232 1492513 - 1492490 - G 79 -2.4 -4.98255 | overlap 1492492 CCGTAATCAGAAAAA TCGTTAGCCT TCTG AAGCTCACAA CGCGTGTTCCACTGC TERM 1233 1493770 - 1493753 - R 100 -12.7 -5.27335 | opp_overlap 1493751, overlap 1493764 CCCTCCAAAGAAAAA CGGGGAC CGAA GTCCCCG CGTCTTACAGGCACG Rpic_1402 1494008 - 1493805 - | hypothetical protein Rpic_1403 1494246 - 1494013 - | hypothetical protein TERM 1234 1494134 - 1494102 - G 74 -11.2 -3.61398 | overlap 1494103 TCCCGCTCCCAATAA GGGCACCGTCGCTC ACCGA GAGCGGCGGTACCG CATGCAACAGCGTGA TERM 1235 1494133 - 1494103 - G 75 -14.7 -2.76696 | overlap 1494102 CCCGCTCCCAATAAG GGCACCGTCGCTC ACCGA GAGCGGCGGTACC GCATGCAACAGCGTG Rpic_1404 1494554 - 1494246 - | hypothetical protein TERM 1236 1494591 - 1494578 - R 100 -9.5 -5.22039 | CGTAAACTGAAAAAA CCCGG ACAC CCGGG CTTACAGCGGCAGTT Rpic_1405 1494967 - 1494605 - | hypothetical protein TERM 1237 1495351 - 1495337 - R 100 -2.8 -5.77677 | overlap 1495338 GAAAAGAACAAAAAA GGGAAA AAA TTTCCA AATCTTTTAAGCCGC Rpic_1406 1496745 - 1495534 - | major facilitator superfamily MFS_1 TERM 1238 1495686 - 1495663 - G 84 -15.3 -3.36273 | overlap 1495637 CGCGTCGAACACCAA GCCACCGGC TGCCGC GCCGGTGGC GATCGCGAGCTGTAC TERM 1239 1497590 - 1497611 + G 80 -13.7 -3.33696 | overlap 1497571 GCAAGCCGGGGTCTC GCGCTCGGT GTTT GCCGAGCGC TTCCTTGCAGCGACC Rpic_1407 1496865 - 1497827 + | transcriptional regulator, AraC family Rpic_1408 1498769 - 1497831 - | transcriptional regulator, LysR family Rpic_1409 1498966 - 1500270 + | major facilitator superfamily MFS_1 TERM 1240 1500855 - 1500835 - g 71 -12.5 -3.21395 | opp_overlap 1500840, overlap 1500833 ATGCCTTGCACAACA TGCCGGGCG TGC CGGCCGGCA GCTTCCGCGTGCTGC Rpic_1410 1500306 - 1501520 + | amidohydrolase TERM 1241 1502984 - 1503035 + G 71 -7.4 -4.07568 | gap 4, overlap 1502957 1502985 CACGAAGCGTTCGCG C-CGGCACGTGCCGCGTCGC-C-GCT ATTG GGCTGAGCGATGCA-CACGTGCCGTG TTTTCCCGGCACGCG TERM 1242 1502985 - 1503033 + G 74 -11.1 -3.63744 | gap 3, overlap 1502957 1502984 ACGAAGCGTTCGCGC CGGCACGTGCCGCGTCGC-C-GCT ATTG GGCTGAGCGATGCA-CACGTGCCG TGTTTTCCCGGCACG Rpic_1411 1501541 - 1503016 + | Amidase Rpic_1412 1503400 - 1503005 - | LysR substrate-binding Rpic_1413 1503517 - 1503999 + | hypothetical protein Rpic_1414 1504850 - 1503996 - | metallophosphoesterase Rpic_1415 1505911 - 1504850 - | ABC transporter related Rpic_1416 1506705 - 1505908 - | binding-protein-dependent transport systems inner membrane component TERM 1243 1506045 - 1506062 + g 70 -2.5 -4.61873 | overlap 1506042 ACGCATAGGTGTCGG CCAGGCC GACC GGCAGGG TTTTGGTTTCTGGCG TERM 1244 1506345 - 1506321 - G 72 -8.5 -3.97042 | overlap 1506334 CGACGATGAACCAAA GGCTCTCGCGA AAG CCGCCAAAGCC GCCGTACGCCACGAT Rpic_1417 1507553 - 1506702 - | binding-protein-dependent transport systems inner membrane component Rpic_1418 1508587 - 1507556 - | extracellular solute-binding protein family 1 TERM 1245 1508396 - 1508417 + g 73 -5.8 -4.45544 | overlap 1508399 GGAGTTCTTGTTGTC GAACGGCA CGGTAA TGCCGGTC TTTTCCTTGATGGCC Rpic_1419 1509654 - 1508584 - | transcriptional regulator, LacI family TERM 1246 1509759 - 1509720 - H 86 -15 -3.40522 | overlap 1509721 1509753 ACTGTTTCATGACAA TCGATGCTGCGATGCAGC CATT ACCGCAACGCAGCATCGC CAGCGTTGCGCATGG TERM 1247 1509758 - 1509721 - H 85 -18.5 -2.64099 | overlap 1509720 1509753 CTGTTTCATGACAAT CGATGCTGCGATGCAGC CATT ACCGCAACGCAGCATCG CCAGCGTTGCGCATG TERM 1248 1510197 - 1510167 - g 77 -11.1 -3.78953 | ATTCGTACTACGAAA CGG-TCGGTGCGCGG CAC CCGCGC-CCGCGCCG GGGCATGCTCACGCG Rpic_1420 1509896 - 1511200 + | protein of unknown function DUF323 Rpic_1421 1512107 - 1511253 - | Ankyrin TERM 1249 1512050 - 1512067 + g 100 -2.6 -5.54894 | opp_overlap 1512039, overlap 1512051 1512064 ACAACGCCATGGTCA GCGCAC CAGCCA GTGCGA TTTTTTTCATCGCTT Rpic_1422 1512894 - 1512091 - | hydrolase, TatD family Rpic_1423 1513366 - 1512947 - | type IV pilus assembly PilZ Rpic_1424 1514419 - 1513409 - | DNA polymerase III, delta prime subunit Rpic_1425 1515118 - 1514501 - | dTMP kinase TERM 1250 1514996 - 1515008 + g 74 -4.8 -4.56597 | opp_overlap 1514953, overlap 1514955 GCCGCCGGGCTCGCG GGTG ACGAC CACC TTTTTGCCCAGGGGC Rpic_1426 1516113 - 1515115 - | aminodeoxychorismate lyase Rpic_1427 1516246 - 1517286 + | folate-binding protein YgfZ Rpic_1428 1517300 - 1517590 + | hypothetical protein Rpic_1429 1517719 - 1518534 + | protein of unknown function DUF833 Rpic_1430 1519448 - 1518546 - | fatty acid hydroxylase TERM 1251 1518783 - 1518771 - G 83 -5.5 -4.8667 | GACATCCCAGAAAAA CAGCA GGT TGCCG AAATTGCCCTTGTAG Rpic_1431 1519547 - 1520452 + | transcriptional regulator, LysR family Rpic_1432 1520894 - 1520442 - | GCN5-related N-acetyltransferase Rpic_1433 1521353 - 1520904 - | thioesterase superfamily protein Rpic_1434 1522348 - 1521368 - | Alpha/beta hydrolase fold-3 domain protein Rpic_1435 1522458 - 1523606 + | Alcohol dehydrogenase TERM 1252 1523664 - 1523624 - T 85 -12.6 -3.72576 | gap 1, opp_overlap 1523628 1523631, overlap 1523607 CGGGCGTTCAGGAAA CGAACGACCGGATCAGCGC ATTA ACGC-GCTCCGGTTGTTCG TGCACGACCCAGTGC Rpic_1436 1524542 - 1523616 - | alpha/beta hydrolase fold TERM 1253 1523815 - 1523805 - G 77 -8.2 -4.31433 | CACCTTCACAATAAA CGCC TCG GGCG GCATCTGGTCGATGC Rpic_1437 1525481 - 1524579 - | short-chain dehydrogenase/reductase SDR Rpic_1438 1526494 - 1525538 - | Glutathione S-transferase domain Rpic_1439 1527370 - 1526522 - | class II aldolase/adducin family protein Rpic_1440 1528478 - 1527468 - | Alcohol dehydrogenase zinc-binding domain protein Rpic_1441 1529926 - 1528523 - | 6-aminohexanoate-dimer hydrolase Rpic_1442 1530442 - 1530008 - | thioesterase superfamily protein TERM 1254 1530259 - 1530306 + g 71 -10.7 -3.57615 | CCGATCGGCCGGCCA TGG-CCATGGCGACGTCGAGCAT CGTC ATGGTC-ACGCCGCCGTGGGCCA TTTCCCAACTGTTCA Rpic_1443 1531257 - 1530475 - | short-chain dehydrogenase/reductase SDR Rpic_1444 1533163 - 1531295 - | acyl-CoA dehydrogenase domain protein TERM 1255 1533180 - 1533209 + r 70 -3.3 -4.70921 | overlap 1533179 1533184 ATGTTGGTGCATCCT GAGTTTCGTCCCC TGCC GGGGCCGACTCAC TTTCTTTGTCTTGTC TERM 1256 1533466 - 1533438 - R 76 -7.4 -4.44046 | opp_overlap 1533438 1533434 1533433 1533441, overlap 1533434 1533439 TCCAGCGGAAACAAA TCAGGCTCCC GTTTTGAGG GGGAGCCTGC TTGGCTTTAGAGCAC Rpic_1445 1534651 - 1533473 - | acetyl-CoA acetyltransferase TERM 1257 1534100 - 1534134 + g 78 -13.5 -3.5393 | gap 1 TTCGTCGTCGAACTT GCCGGCGGCAGCGGCG GCAG CGGCGC-GCTGCTGGC TTTGCACGCCGTACT Rpic_1446 1535351 - 1534710 - | Nicotinamidase TERM 1258 1534901 - 1534882 - G 72 -2.8 -4.66609 | gap 1, overlap 1534884 CACGCCACGCAAAAA TCCG-TGGC GAG GCCAACGCA GAACACGCGCTCGAC Rpic_1447 1537472 - 1535391 - | 3-hydroxyacyl-CoA dehydrogenase NAD-binding TERM 1259 1536390 - 1536417 + g 74 -10.6 -3.68988 | gap 1 GTAGGACAGCGTCGG GGTC-AGCAGGGC CAT GCGCTGCTCGACC TTCTCTTGCGTGAGC TERM 1260 1538446 - 1538479 + G 72 -11 -3.50853 | overlap 1538447 GTTCGTGGGTGGGCT GCCGGCGATGATCG GCGTGG CGATGATCGCCGGG TTCTCGTTCCAGGGG TERM 1261 1538447 - 1538478 + G 75 -14.5 -2.70298 | overlap 1538446 TTCGTGGGTGGGCTG CCGGCGATGATCG GCGTGG CGATGATCGCCGG GTTCTCGTTCCAGGG Rpic_1448 1537832 - 1539367 + | amino acid permease-associated region TERM 1262 1539381 - 1539413 + F 85 -8.9 -4.63218 | overlap 1539382 AACCATCCCCCCGCT CCGCCAGCCGTTTGC ACA GCATCCGGCCGGCGC TTTTATTGGGGCGCC TERM 1263 1539382 - 1539412 + F 76 -12.4 -3.3761 | overlap 1539381 ACCATCCCCCCGCTC CGCCAGCCGTTTGC ACA GCATCCGGCCGGCG CTTTTATTGGGGCGC Rpic_1449 1539448 - 1540971 + | amino acid permease-associated region TERM 1264 1541010 - 1540985 - T 100 -14.7 -5.38497 | opp_overlap 1540985 1540984 1540982 AGGCAAATCAAAAAA GGCCCGCACAG TTGT CCATGCGGGCC ATCTTTTCAGTGTGG Rpic_1450 1541760 - 1541041 - | ABC transporter related Rpic_1451 1542560 - 1541760 - | ABC transporter related Rpic_1452 1543891 - 1542557 - | inner-membrane translocator Rpic_1453 1544884 - 1543892 - | inner-membrane translocator TERM 1265 1544388 - 1544377 - G 76 -2.2 -4.93296 | TGAGCAGCAGAAAAA TGCC AACC AGCA TCAGCAGCGACACCA TERM 1266 1544816 - 1544780 - G 77 -12.3 -3.66288 | opp_overlap 1544778, overlap 1544782 CAGGCCCGAAGACAA CATGAACAGCAGCAGCC CGT AGCTGATGCCGTTCAAG AGATTGATGACTAGA TERM 1267 1544814 - 1544782 - G 77 -13.5 -3.41024 | opp_overlap 1544778, overlap 1544780 GGCCCGAAGACAACA TGAACAGCAGCAGCC CGT AGCTGATGCCGTTCA AGAGATTGATGACTA TERM 1268 1544865 - 1544908 + g 75 -12.5 -3.55444 | gap 2, opp_overlap 1544860 TTCCAGCAGATTCGG CGGAG--CACGGGCGAGCGCA TCAA TGCGCTGGCCCATGGACTCCG TTTAAAACATCGCCG Rpic_1454 1546222 - 1544966 - | putative Leu/Ile/Val-binding precursor signal peptide protein TERM 1269 1546387 - 1546428 + r 100 -21 -4.17698 | gap 3 CCGGTTGTCTTACGT CCGCCGTCCTCGTGC-CGGGG TGA CCCCGTGCACG-GG-CGGCGG TTTCTATATGTAGCT Rpic_1455 1548070 - 1546442 - | AMP-dependent synthetase and ligase TERM 1270 1548237 - 1548203 - H 78 -7.1 -4.62069 | overlap 1548204 CGGCCATCTGAAAAA TCCTGCGAATCGTTG TGGTG CAAGGGTTCGCAGGC TGCAGCTTTTTTTAC TERM 1271 1549687 - 1549703 + G 78 -7.9 -4.44667 | opp_overlap 1549670 1549687 1549688, overlap 1549684 1549687 1549688 CCGGCTGCGGCAGAA GCGCGCA CCG TGCGCGA TTTCTTCTTCGACCG Rpic_1456 1548415 - 1550004 + | protein of unknown function UPF0061 Rpic_1457 1550162 - 1550548 + | methionine-R-sulfoxide reductase Rpic_1458 1550597 - 1551169 + | intracellular septation protein A Rpic_1459 1551169 - 1551441 + | BolA family protein TERM 1272 1551461 - 1551435 - f 70 -3.6 -4.63932 | overlap 1551438 CACTCCCGAAGAAAA CACGTAAGCGCA TTC CACGCTCACTCG TCCTTCCCTCGAACG Rpic_1460 1551484 - 1552281 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1273 1552326 - 1552312 - f 93 -8.5 -5.08824 | opp_overlap 1552306 1552312 GGGGCAGTGAAAAAA GGGGC CGCGT GCCCC TTTTTGATTTGATGG TERM 1274 1552312 - 1552326 + F 93 -8.5 -5.01811 | opp_overlap 1552312, overlap 1552306 GGGGCAGTGAAAAAA GGGGC CGCGT GCCCC TTTTTGATTTGATGG TERM 1275 1552375 - 1552385 + F 89 -6.8 -5.09259 | AATCGGAATCCCCTC CCTG CCC CAGG TTTTCTTTTGAAGTG Rpic_1461 1552573 - 1553553 + | protein of unknown function DUF534 Rpic_1462 1553729 - 1554637 + | inner-membrane translocator Rpic_1463 1554639 - 1555433 + | ABC transporter related TERM 1276 1556078 - 1556063 - g 80 -4.6 -4.83169 | overlap 1556064 1556065 ACGGGCTGAGAAAAA GGCCGC CGCC GCAACC AAGCGTGAAGCCCGC Rpic_1464 1555533 - 1556633 + | hypothetical protein TERM 1277 1556687 - 1556668 - f 100 -15 -4.7497 | CCGATCCAGCAAAAA CGGGCACC CGAA GGTGCCCG TGTCCGATACAGCGA TERM 1278 1560190 - 1560209 + G 75 -4.2 -4.65895 | gap 1 CATCCAGCTTGAGTT CGCGCCTGA ACA TCTG-CGCG TTTTTGCATGACGCA Rpic_1467 1559132 - 1560220 + | spermidine/putrescine ABC transporter ATPase subunit Rpic_1468 1560292 - 1561332 + | extracellular solute-binding protein family 1 Rpic_1469 1561436 - 1562704 + | binding-protein-dependent transport systems inner membrane component Rpic_1470 1562721 - 1563557 + | binding-protein-dependent transport systems inner membrane component TERM 1279 1563586 - 1563633 + T 100 -22.2 -2.62263 | opp_overlap 1563622 1563624 TGGTTGTTTTCTGTG GTTCATTCCCTGTTTCAGCCCC GGCA GGGGGTGAAACAGGGAATGCGC TGCTGTCCCAAGCAT Rpic_1471 1564382 - 1563798 - | short-chain dehydrogenase/reductase SDR Rpic_1472 1565260 - 1564454 - | transposase IS4 family protein Rpic_1473 1565421 - 1565260 - | putative dehydrogenase/reductase oxidoreductase protein TERM 1280 1566373 - 1566416 + G 82 -15.4 -3.16881 | gap 1, overlap 1566374 CGATGCCGGTGTCGC TG-GTGTACCCGAACCGGCGG AAT CTGCCGGTTCGGGTGCAAGTA TTCATGAACTGGATG TERM 1281 1566374 - 1566414 + G 89 -18.3 -3.14602 | overlap 1566373 GATGCCGGTGTCGCT GGTGTACCCGAACCGGCGG AAT CTGCCGGTTCGGGTGCAAG TATTCATGAACTGGA Rpic_1474 1565553 - 1566479 + | transcriptional regulator, LysR family TERM 1282 1566469 - 1566513 + T 78 -6.4 -4.66833 | gap 2 TGGAGACGGCATCGA GCG-GGCGAT-AGTGAGCGCGG TCA CTGCGCCGGCTTATCGCTACGC TTTTTCAGGTTGGCG Rpic_1475 1567382 - 1566489 - | extracellular solute-binding protein family 3 TERM 1283 1567544 - 1567525 - R 100 -12.8 -6.17184 | opp_overlap 1567524 1567525 AGCATGAAAAAAAAA GCGCCGAG TTGC CCCGGCGC GTTGTTCATCGTTCT Rpic_1476 1570682 - 1567653 - | transposase Tn3 family protein Rpic_1477 1571272 - 1570679 - | Resolvase domain TERM 1284 1570839 - 1570864 + g 72 -11.1 -3.53012 | overlap 1570840 TCGCCGGTGATCGCC TGCGGCCGG CCGCCGAT CCGGCCGCG TTTGCGGGCGGCAGC Rpic_1478 1571511 - 1571789 + | hypothetical protein Rpic_1479 1571786 - 1572070 + | addiction module toxin, RelE/StbE family Rpic_1480 1572477 - 1573037 + | hypothetical protein TERM 1285 1573094 - 1573050 - f 82 -15 -3.14881 | gap 2, opp_overlap 1573052 1573063, overlap 1573052 TAACCCGCCGATGAA CACGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG-G TTATCGGCAACGTAG TERM 1286 1573093 - 1573052 - f 90 -18.7 -3.13522 | gap 1, opp_overlap 1573052 1573063, overlap 1573050 ACCCGCCGATGAACA CGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG GTTATCGGCAACGTA TERM 1287 1573052 - 1573093 + F 78 -16.5 -2.57344 | gap 1, opp_overlap 1573052 1573050, overlap 1573063 ACCCGCCGATGAACA CGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG GTTATCGGCAACGTA TERM 1288 1573063 - 1573083 + F 86 -13.9 -3.54638 | opp_overlap 1573052 1573050, overlap 1573052 AACACGGACCCCCAA CAGCGGCGC GTT GCGCCGCCG TTTCGGGCCGGTTAT Rpic_1481 1573171 - 1573527 + | Cupin 2 conserved barrel domain protein Rpic_1482 1574022 - 1574840 + | copper resistance B precursor Rpic_1483 1575014 - 1575427 + | hypothetical protein Rpic_1484 1575718 - 1575455 - | hypothetical protein Rpic_1485 1577269 - 1575740 - | transposase IS66 Rpic_1486 1577622 - 1577332 - | IS66 Orf2 family protein Rpic_1487 1577951 - 1577664 - | hypothetical protein TERM 1289 1578253 - 1578232 - R 71 -9.5 -3.72576 | gap 1, overlap 1578235 CTTTTGGGCAGCAAA TGACGCCAGC TTG GCTGGCGT-A CCAGCGGGCGAGATA TERM 1290 1578251 - 1578235 - R 75 -13.7 -2.96695 | overlap 1578232 TTGGGCAGCAAATGA CGCCAGC TTG GCTGGCG TACCAGCGGGCGAGA Rpic_1488 1578677 - 1578270 - | hypothetical protein Rpic_1489 1579205 - 1578756 - | GtrA family protein TERM 1291 1579172 - 1579143 - G 84 -16.5 -2.89191 | opp_overlap 1579140, overlap 1579131 1579162 GTACAGCGCCAGATA GTGAGTGGCGGTG GAAG CACCGCCACTCAG CAGATATCTGTAGAA Rpic_1490 1580141 - 1579275 - | Methyltransferase type 11 Rpic_1491 1581738 - 1580680 - | ISXo7 transposase TERM 1292 1581256 - 1581300 + g 86 -3.5 -5.16237 | gap 1, overlap 1581257 1581258 1581277 GATGGCGGGGTATTC ATCTTCGAGC-CAGGCCTGG ACGGCC TCAGGCCTCTGCTCGTAGGC TTTTTTGATCGGCTT TERM 1293 1581818 - 1581802 - H 83 -4.3 -5.1287 | GCCAGAGCGAAAAAA CGCGCAG CAA CTTCACG GGCACCATCAATGGA Rpic_1492 1582152 - 1582967 + | transcriptional regulator, LysR family Rpic_1493 1583735 - 1583088 - | hypothetical protein Rpic_1494 1584681 - 1583704 - | hypothetical protein TERM 1294 1584575 - 1584555 - GR 78 -13.3 -3.14564 | opp_overlap 1584549, overlap 1584543 TCAGCGCCCCAGGAA CACGGTACC GCA GGCACCGTG TCACCAGTTCATAAA TERM 1295 1584621 - 1584593 - GR 79 -4.5 -4.86001 | opp_overlap 1584595, overlap 1584594 1584595 ACCAGTTCATAAAAA TCCTGGATCGC TGCCGTG GCGATCCGGTA ATTGCCAGTGACCAG Rpic_1495 1586681 - 1584708 - | integrase catalytic region TERM 1296 1584888 - 1584863 - G 78 -7.5 -4.4009 | opp_overlap 1584876 1584876 1584883 GCGCAGTCGACAAAA CACGGATGACG TGCG CGAGATCCGTG GCGGCTTTGCGTGTG TERM 1297 1585040 - 1585018 - G 71 -10.5 -3.57144 | overlap 1585019 TTGCGCAGCCGCAAA TCGTGGGGC ACCAG GCCCCACGC GCCCTGCGCCTGCAA TERM 1298 1585039 - 1585019 - G 71 -14 -2.74144 | overlap 1585018 TGCGCAGCCGCAAAT CGTGGGGC ACCAG GCCCCACG CGCCCTGCGCCTGCA Rpic_1496 1587319 - 1586681 - | hypothetical protein Rpic_1497 1587723 - 1588568 + | mucin-associated surface protein Rpic_1498 1588673 - 1589623 + | hypothetical protein TERM 1299 1589720 - 1589674 - g 93 -18.2 -3.36749 | gap 2 TATGGCCAAGACCAA GCCGCGCAGATGCG-A-AAGGC ACCGG GCCTTGCGCGCATCCGCGCGGC AGCATCTGACTCCAG Rpic_1499 1589635 - 1590489 + | hypothetical protein TERM 1300 1590676 - 1590642 - g 86 -9.8 -4.49958 | overlap 1590659 ACCGCAGCAAAGAAA GCCGCACCGGCAAAGA AGA CCGCCGCCGCCGCGGC CCCGACCATCAAGCC Rpic_1500 1590609 - 1591001 + | histone family protein DNA-binding protein TERM 1301 1591026 - 1591044 + F 100 -16 -4.41047 | opp_overlap 1591002 TGCCATTCGTGCCAA CGGGAGGC CAA GCCTCCCG TTTTCATTGGCGCGT TERM 1302 1591481 - 1591469 - g 75 -9.1 -4.053 | ACGATGTCACACAAA GCGTC ATC GACGC AGCCGTGGCCGACGC TERM 1303 1591824 - 1591798 - g 73 -12.3 -3.32803 | overlap 1591796 1591794 ACTACATCAAAGACA GGCCG-CGCCAGC GAA GC-GGCGGCGGCC CCCTCGACAGCGCAG Rpic_1501 1591087 - 1591848 + | hypothetical protein Rpic_1502 1592718 - 1591993 - | hypothetical protein Rpic_1503 1595507 - 1593108 - | restriction endonuclease Rpic_1504 1596378 - 1595524 - | hypothetical protein TERM 1304 1596409 - 1596394 - R 100 -11.8 -4.84527 | opp_overlap 1596394 TGCAGATATGAAAAA GCCGCC CGAA GGCGGC TCCTGTAACGTGCGA Rpic_1505 1596618 - 1596433 - | hypothetical protein Rpic_1506 1597202 - 1596615 - | hypothetical protein TERM 1305 1597186 - 1597201 + g 79 -6.1 -4.62069 | overlap 1597174 GCAGTGTCCCAGTCT TGGCG CTGGGC CGCCA TTTTTGAGGTCGGCG TERM 1306 1597270 - 1597294 + H 100 -10.7 -4.84274 | opp_overlap 1597270 CTAACATGCCTAAAA GCGCACTCCAT CGA GTGAAGTGCGC TTTTTACTGTGGTTG TERM 1307 1597294 - 1597270 - H 95 -12.2 -4.14472 | opp_overlap 1597270 CTAACATGCCTAAAA GCGCACTCCA TCGAG TGAAGTGCGC TTTTTACTGTGGTTG TERM 1308 1597730 - 1597681 - g 70 -14.1 -2.53876 | gap 1 GCGCACCCGAAGGTA CGGCGCATGACCGCCTGGCTGCGC GCT GAACTGGC-GGCGGCCGTGCGCCG CGCCGGCCACTACGG TERM 1309 1598444 - 1598404 - g 90 -16 -3.53012 | gap 1, opp_overlap 1598426 1598440 TGGCTGCGCTCGAAA CCGGGGCTGCCGCCTGCCG AGAT CGCCCGGCGGC-GCACCGG CCGGCGCGATGTCAT Rpic_1507 1597420 - 1599534 + | integrase family protein TERM 1310 1600494 - 1600484 - g 80 -5.4 -4.83759 | AACGAAATCCAAAAA TTGC AAG GCAA ATACGATCTTGTCGT Rpic_1508 1600253 - 1600951 + | Cobyrinic acid ac-diamide synthase Rpic_1509 1600944 - 1602020 + | parB-like partition protein TERM 1311 1602051 - 1602081 + F 100 -10.5 -5.42862 | gap 1, opp_overlap 1602053, overlap 1602056 TGCAGGTTTTTCAAC GACGA-GGCCCAGG TGTA CCTGGGTCTTTGTC TTTTTTTGACGCTCT TERM 1312 1602056 - 1602075 + F 95 -11.4 -4.72373 | opp_overlap 1602053, overlap 1602051 GTTTTTCAACGACGA GGCCCAGG TGTA CCTGGGTC TTTGTCTTTTTTTGA TERM 1313 1602976 - 1602926 - f 73 -10.7 -3.6106 | gap 1, overlap 1602929 CGTAAGATTGCCAAA CGAGCGCTATAGGTGAAAAATCTA CCCC TAG-TTTTTCACCTATAGCGAACC CACCCACTAGGTCAT TERM 1314 1602973 - 1602929 - f 81 -15.4 -2.92439 | gap 1, overlap 1602926 AAGATTGCCAAACGA GCGCTATAGGTGAAAAATCTA CCCC TAG-TTTTTCACCTATAGCGA ACCCACCCACTAGGT Rpic_1510 1602990 - 1604297 + | hypothetical protein Rpic_1511 1606023 - 1604302 - | UvrD/REP helicase Rpic_1512 1606604 - 1606131 - | hypothetical protein Rpic_1513 1607085 - 1606741 - | flagellar transcriptional activator TERM 1315 1606869 - 1606858 - G 78 -4.4 -4.83615 | GATGCGGCACAAAAA CAGA TTGG TCTG TGCCATGCGCACGCA Rpic_1514 1608058 - 1607192 - | hypothetical protein Rpic_1515 1608735 - 1608118 - | hypothetical protein Rpic_1516 1608983 - 1608735 - | hypothetical protein Rpic_1517 1609461 - 1608955 - | hypothetical protein Rpic_1518 1611325 - 1609469 - | hypothetical protein Rpic_1519 1612584 - 1611322 - | hypothetical protein TERM 1316 1612156 - 1612201 + g 75 -13.9 -2.91912 | gap 1, opp_overlap 1612160 1612168 TTCGCCACCTTCCAG CCAAGCCGAGAAGGCGCCATGC GCG GCAGGGCTCCA-CTCGGCCTGG TCTCTCAGTCGGTAG TERM 1317 1612248 - 1612226 - G 71 -9.8 -3.69354 | CGGTAGAACTGGAAA TGGCGGAACG GTT CGTCCAGCCA GGTGCAGCACGCCGC Rpic_1520 1613659 - 1612589 - | hypothetical protein TERM 1318 1612930 - 1612914 - G 70 -2.1 -4.62471 | overlap 1612915 GTGAATTCGGAAAAA CCCAGGG CGA CCGCGAG CTGGCCGACGACGAT Rpic_1521 1614462 - 1613671 - | hypothetical protein Rpic_1522 1616966 - 1614519 - | type IV secretory pathway VirB4 components-like protein Rpic_1523 1617289 - 1616960 - | hypothetical protein Rpic_1524 1617636 - 1617292 - | hypothetical protein Rpic_1525 1618698 - 1617649 - | type II secretion system protein E Rpic_1526 1619120 - 1619833 + | hypothetical protein Rpic_1527 1619830 - 1620711 + | Conjugal transfer protein TrbG/VirB9/CagX TERM 1319 1620887 - 1620861 - g 78 -8 -4.37502 | ACTACCAGAGCAAAA CCGACGCC GAAGTGAAAGA GGCGTCGG AGGAGCAGCGCGCGG Rpic_1528 1620722 - 1621933 + | conjugation TrbI family protein Rpic_1529 1621953 - 1622726 + | hypothetical protein Rpic_1530 1622723 - 1623973 + | hypothetical protein TERM 1320 1624009 - 1624025 + G 85 -5.1 -5.06103 | overlap 1624007 CGAGACGTGAGCGGT GCGAAAA GGC TGTTCGC TTTTTTCGCACTTCT Rpic_1531 1623970 - 1624446 + | Lytic transglycosylase catalytic Rpic_1532 1624464 - 1624988 + | hypothetical protein Rpic_1533 1624985 - 1626676 + | PilN TERM 1321 1627124 - 1627077 - g 88 -10.4 -4.3467 | gap 1 AGGCGGACATCAAAA GCTC-GGAGTCGCGCGCGATGCA GGC TGCAACGAGCGTGACGCCTGGGC AGGCAGGGGAACCGG Rpic_1534 1626689 - 1627399 + | hypothetical protein Rpic_1535 1627401 - 1628654 + | hypothetical protein Rpic_1536 1628656 - 1630242 + | type II secretion system protein E Rpic_1537 1630239 - 1631312 + | type II secretion system protein Rpic_1538 1631349 - 1631849 + | hypothetical protein Rpic_1539 1631872 - 1632348 + | hypothetical protein Rpic_1540 1632361 - 1633659 + | hypothetical protein Rpic_1541 1633672 - 1634313 + | hypothetical protein TERM 1322 1634397 - 1634377 - T 100 -12.5 -5.42975 | opp_overlap 1634377 CGACACAAAGAAAAA GCCCCACGG TGA CTGTGGGGC TTTCTTTTTGATGGC TERM 1323 1634377 - 1634397 + T 100 -14.7 -4.91852 | opp_overlap 1634377 CGACACAAAGAAAAA GCCCCACGG TGA CTGTGGGGC TTTCTTTTTGATGGC Rpic_1542 1635404 - 1634421 - | SCP-like extracellular Rpic_1543 1635996 - 1635553 - | hypothetical protein Rpic_1544 1636466 - 1636107 - | hypothetical protein Rpic_1545 1637794 - 1636613 - | hypothetical protein TERM 1324 1637849 - 1637872 + r 76 -8.8 -4.02334 | overlap 1637850 AATCAGGCGGTTTAC GTGCGTGTCC GGCG GGACACGCGG TTTGTGGTCTCGGTG TERM 1325 1637850 - 1637871 + r 72 -12.3 -3.00918 | overlap 1637849 ATCAGGCGGTTTACG TGCGTGTCC GGCG GGACACGCG GTTTGTGGTCTCGGT Rpic_1546 1639053 - 1637845 - | hypothetical protein TERM 1326 1639667 - 1639708 + H 86 -14.5 -3.3482 | overlap 1639670 TGATTTGTCCCGGCT CAGCTTGTTTGCCTGACGC TCGC GCGTGAGGCAAGCACGTTG TTGCTTGCGGGATTC TERM 1327 1639670 - 1639705 + H 85 -12.6 -3.81146 | overlap 1639667 TTTGTCCCGGCTCAG CTTGTTTGCCTGACGC TCGC GCGTGAGGCAAGCACG TTGTTGCTTGCGGGA Rpic_1547 1639800 - 1640114 + | hypothetical protein Rpic_1548 1640212 - 1640640 + | hypothetical protein Rpic_1549 1640649 - 1641416 + | hypothetical protein Rpic_1550 1641434 - 1641967 + | single-strand binding protein TERM 1328 1642141 - 1642118 - f 71 -8 -4.07687 | opp_overlap 1642118 1642117 1642104, overlap 1642104 ACGTCGTGCTGAAAA GACGGTCTGC CCGT GCGGGCCGTC CTTTGAGCAAGCGTT Rpic_1551 1642205 - 1643281 + | P4 alpha zinc-binding domain protein TERM 1329 1643288 - 1643305 + F 100 -9.1 -4.84539 | GCCGCCTAAGTTCGT TGCCGCC TTCG GGTGGCA TTTTCTCTTTACTTC TERM 1330 1643318 - 1643349 + F 80 -15.3 -3.05715 | gap 1, overlap 1643319 GCATTTTCTCTTTAC TTCTGCCCTGTGGG TTCGT CCCACAGGGC-GAA TTCCCTGGGCGCATT Rpic_1552 1643377 - 1643589 + | hypothetical protein TERM 1331 1643616 - 1643634 + T 100 -17.4 -5.81032 | opp_overlap 1643616 AACCCTAACGAAAAA CGCCCGGC ACT GCCGGGCG TTTTTTTTCGCCTTC TERM 1332 1643634 - 1643616 - T 100 -17.4 -4.87893 | opp_overlap 1643616 AACCCTAACGAAAAA CGCCCGGC ACT GCCGGGCG TTTTTTTTCGCCTTC Rpic_1553 1643808 - 1643671 - | hypothetical protein Rpic_1554 1644312 - 1643926 - | hypothetical protein Rpic_1555 1645330 - 1644332 - | hypothetical protein TERM 1333 1644538 - 1644556 + g 75 -4.4 -4.59773 | TTTCCTTGACGGCGA GCTGGCAG ACG CTGCGCGC TTTTTCCAGATACGG TERM 1334 1644590 - 1644608 + g 74 -2.3 -4.82901 | GAGATCGATCTCCTT GTCGAAG AACAG CATCGGC TTTTTGTCGCGCAGG TERM 1335 1645793 - 1645812 + H 100 -12.2 -5.40072 | GGGCACCAATGTTCG TGCCGGAT AGTC ATCCGGCA TTTTTTTCAAGCAAA Rpic_1556 1645836 - 1645967 + | hypothetical protein TERM 1336 1647344 - 1647292 - g 72 -8.4 -4.07885 | overlap 1647295 1647307 TACCGTGCTGGAAAA GCACGCCGT-GACCAAGCGCGGCGAC GGT GTCACCGCCCACGGTCTACGACAC-C AGTTCCTGCAGCAGA TERM 1337 1647342 - 1647295 - g 72 -13.4 -3.08032 | gap 1, overlap 1647292 1647307 CGTGCTGGAAAAGCA CGCCGT-GACCAAGCGCGGCGAC GGT GTCACCGCCCACGGTCTACGACA CCAGTTCCTGCAGCA Rpic_1557 1646510 - 1647697 + | transcriptional regulator, Fis family TERM 1338 1648737 - 1648769 + G 93 -18.4 -3.32844 | gap 1, overlap 1648765 CTATGGACGCACATG CCGGTGCCGGTGCCG GTGC CGGC-CCGGCCCCGG TTGTGCGATCGCGAC Rpic_1558 1647707 - 1648864 + | hypothetical protein TERM 1339 1648892 - 1648931 + T 82 -15.1 -3.14881 | opp_overlap 1648895 1648902, overlap 1648902 CGCGTTCAGGACAAA TAACGCAAAAGCCGCCA ACGGTG TGGCGGCTTTTGCGGGA TTGGTCGGCGGGTTA TERM 1340 1648928 - 1648895 - T 100 -21.2 -4.11183 | opp_overlap 1648892 1648902, overlap 1648902 GTTCAGGACAAATAA CGCAAAAGCCGCCA ACGGTG TGGCGGCTTTTGCG GGATTGGTCGGCGGG TERM 1341 1648921 - 1648902 - T 87 -10.7 -4.40311 | opp_overlap 1648902 1648892, overlap 1648895 ACAAATAACGCAAAA GCCGCCA ACGGTG TGGCGGC TTTTGCGGGATTGGT TERM 1342 1648902 - 1648921 + T 80 -10.7 -4.11751 | opp_overlap 1648895 1648902, overlap 1648892 ACAAATAACGCAAAA GCCGCCA ACGGTG TGGCGGC TTTTGCGGGATTGGT Rpic_1559 1649066 - 1648944 - | hypothetical protein Rpic_1560 1650009 - 1649092 - | DNA/RNA non-specific endonuclease Rpic_1561 1650745 - 1650251 - | hypothetical protein Rpic_1562 1651146 - 1650904 - | hypothetical protein Rpic_1563 1652320 - 1651457 - | hypothetical protein Rpic_1564 1652636 - 1652304 - | hypothetical protein Rpic_1565 1654543 - 1652636 - | hypothetical protein Rpic_1566 1655415 - 1654645 - | hypothetical protein TERM 1343 1655265 - 1655247 - G 73 -9.5 -3.83675 | overlap 1655244 1655259 GAAGCGAACGAACAA CCGACCG AGAGA CGGCCGG CACCAATATGCCGAC Rpic_1567 1656822 - 1655455 - | hypothetical protein Rpic_1568 1658042 - 1656822 - | hypothetical protein TERM 1344 1656873 - 1656924 + g 72 -7.2 -4.2828 | gap 1, opp_overlap 1656894 CGCTACGGGGTGTTT GTTCGGGTTCCATTCGACCAACCGG ATA CCG-TTGGTCGCGTAGTACTCGCGC TTTTCCTGCATCCGC TERM 1345 1657483 - 1657507 + g 71 -7.7 -4.13767 | opp_overlap 1657486, overlap 1657487 CGCATGATGTGCAGC ACATCGGCTGC CGG GCGGCCGTTGA TTTTCGCGTCGGCGA TERM 1346 1657487 - 1657503 + g 74 -11.5 -3.68366 | opp_overlap 1657486, overlap 1657483 TGATGTGCAGCACAT CGGCTGC CGG GCGGCCG TTGATTTTCGCGTCG Rpic_1569 1659514 - 1658054 - | putative DNA helicase Rpic_1570 1659950 - 1659516 - | hypothetical protein Rpic_1571 1660123 - 1660611 + | hypothetical protein TERM 1347 1660615 - 1660636 + F 77 -11.5 -3.67597 | GGAAGGTGGTAGCGG GCTGGGCGC GCGT GCGCGCAGC TTGTTGGCTCAGCGA TERM 1348 1661663 - 1661653 - g 74 -4.6 -4.56597 | overlap 1661654 1661657 CTGGTGTCGGAAAAA CGCA CTT CGCG CTGAAGCTGGCCGAA Rpic_1572 1661109 - 1662299 + | AAA ATPase central domain protein Rpic_1573 1662407 - 1662796 + | hypothetical protein TERM 1349 1663136 - 1663153 + GF 70 -2.7 -4.63486 | overlap 1663137 TTATCACAACCACTC AGAAGAT TTTT ATCTTCA TTTTCTTAACGAGCT Rpic_1574 1663029 - 1664027 + | hypothetical protein Rpic_1575 1663981 - 1664208 + | hypothetical protein TERM 1350 1664730 - 1664696 - g 79 -11.6 -3.85698 | TTTCTCGCTTACAAA CACCCTTCGTCATG TTCATCC CATGACAAAGGATG AGGAATACGAAGCAC Rpic_1576 1664199 - 1665926 + | hypothetical protein Rpic_1577 1665986 - 1667665 + | hypothetical protein Rpic_1578 1668694 - 1667624 - | hypothetical protein Rpic_1579 1669596 - 1668691 - | TniB family protein Rpic_1580 1671511 - 1669589 - | hypothetical protein TERM 1351 1669895 - 1669881 - G 79 -5.7 -4.59853 | CGAATCTCCCAAAAA CTTGC AGGCG GCAAG CTCGAATCTCGATAG Rpic_1581 1672159 - 1671515 - | TnsA endonuclease Rpic_1582 1673606 - 1672548 - | protein of unknown function DUF6 transmembrane TERM 1352 1673294 - 1673308 + g 81 -12.8 -3.64703 | TGAGTAGCAGCGATG CGGGGG CGG CCCCCG TTTGCGTCAACCCCG Rpic_1584 1674052 - 1674330 + | protein of unknown function DUF156 TERM 1353 1674643 - 1674673 + G 76 -14.1 -3.16564 | TCTGGCCGGCTTCAC CAGCGCCATCATC CTGGC GATGATCGCGCTG TTGATCGGCTACGAA Rpic_1585 1674338 - 1675642 + | cation diffusion facilitator family transporter Rpic_1586 1675768 - 1676724 + | hypothetical protein Rpic_1587 1677067 - 1677990 + | cation diffusion facilitator family transporter Rpic_1588 1679696 - 1678053 - | natural resistance-associated macrophage protein Rpic_1589 1679946 - 1679740 - | hypothetical protein Rpic_1590 1681613 - 1680183 - | Carbohydrate-selective porin OprB Rpic_1591 1682419 - 1681993 - | hypothetical protein Rpic_1592 1682672 - 1682511 - | hypothetical protein TERM 1354 1682809 - 1682771 - H 75 -2.4 -5.00616 | overlap 1682773 1682785 CCGCGCGTGAAAAAA TCGCGTAAACAAACCACC CTG GATGCCCTGTTTAAGCCA GTTCACGGGCAAAGG TERM 1355 1683444 - 1683459 + G 72 -9 -3.99592 | CATCCTGGTGTTGCT GCCGAT CTTC ATCGGC TTTGTGGTGCTGCAT Rpic_1593 1682926 - 1684899 + | amino acid transporter-like protein TERM 1356 1685541 - 1685555 + F 75 -2.8 -4.98857 | opp_overlap 1685526, overlap 1685543 CTTCGCTAATTCTCA GCGA AAAAGCG TCGC TTTTTCTAATTCCCT TERM 1357 1685855 - 1685886 + F 79 -14.4 -2.97386 | overlap 1685860 1685861 1685864 1685869 1685885 AGGTCGTTCCATCTT CTTCCCCGCTGGGA GCCG TCCCAGCAGGGACG TCTCTCGTCCATTTT Rpic_1594 1685915 - 1686289 + | hypothetical protein TERM 1358 1686363 - 1686339 - g 88 -10 -4.44797 | opp_overlap 1686333, overlap 1686333 1686331 CGACGAACACCAAAA GGCCTTGGTC GATTT GATCAAGGCC TTCGGGTACCGTCAC TERM 1359 1687047 - 1687024 - g 77 -12.4 -3.66178 | GGGTGGAACCGGAAA CTGGCTGCGC GTGA GCGTAGCCAG GAAACCTCCCCGCCC Rpic_1595 1686286 - 1687218 + | hypothetical protein TERM 1360 1687247 - 1687276 + F 81 -15.7 -2.87132 | opp_overlap 1687247 CGGCCTCGCGCAAGA GCGGGTCCCCATC TGCG GAGGGGGATCCGC TGTCTGGCACCGCAG TERM 1361 1687276 - 1687247 - f 76 -13.5 -3.01712 | opp_overlap 1687247 CGGCCTCGCGCAAGA GCGGGTCCCCATC TGCG GAGGGGGATCCGC TGTCTGGCACCGCAG TERM 1362 1687378 - 1687406 + F 100 -14.5 -4.21922 | overlap 1687371 1687379 GCGTCTCGCGGTTGT CCGAGGGCCAGCG GTT CGGTGGCCCTCGC TTTCATTTTCCATCC TERM 1363 1687379 - 1687405 + F 89 -18 -3.1243 | overlap 1687371 1687378 CGTCTCGCGGTTGTC CGAGGGCCAGCG GTT CGGTGGCCCTCG CTTTCATTTTCCATC TERM 1364 1687425 - 1687459 + F 100 -15 -4.19817 | overlap 1687426 CATTTTCCATCCCAT CGGGAACCTGTTCCCG GTG CGGCAACGGGTTCCCC TTTTCCATCCCTGGA TERM 1365 1687426 - 1687458 + F 89 -18.5 -3.11569 | overlap 1687425 ATTTTCCATCCCATC GGGAACCTGTTCCCG GTG CGGCAACGGGTTCCC CTTTTCCATCCCTGG Rpic_1596 1687485 - 1689149 + | parB-like partition protein Rpic_1597 1689194 - 1689679 + | hypothetical protein Rpic_1598 1689689 - 1689907 + | hypothetical protein TERM 1366 1689978 - 1689963 - g 84 -11.8 -3.98484 | opp_overlap 1689963 AATGGAACTGAGAAA CCGCCC GATA GGGCGG TTTTTCTACATGATG TERM 1367 1689963 - 1689978 + G 100 -11.8 -4.88736 | opp_overlap 1689963 AATGGAACTGAGAAA CCGCCC GATA GGGCGG TTTTTCTACATGATG Rpic_1599 1689900 - 1690118 + | hypothetical protein Rpic_1600 1690265 - 1691143 + | hypothetical protein TERM 1368 1691189 - 1691206 + G 83 -9.1 -4.39166 | GTCGGTCTCATGACG TGGCCCT GCAA GGGGCCA TTTTGCTGTATGGGC TERM 1369 1691431 - 1691451 + G 70 -8.1 -3.96216 | overlap 1691433 1691434 GTAACGTGGTGGTGC CCGCCGGCG ATT CGCCGGGTG TTCTTTCAATGCAAA Rpic_1601 1691152 - 1691874 + | hypothetical protein Rpic_1602 1691876 - 1692517 + | hypothetical protein Rpic_1603 1692514 - 1693314 + | UBA/THIF-type NAD/FAD binding protein TERM 1370 1693323 - 1693344 + F 100 -14.5 -5.72622 | opp_overlap 1693322 TGCTTGATTGAACAT GGCCATCCT CCGA AGGATGGCC TTTTTTCTTTCTGAG Rpic_1604 1693429 - 1694124 + | hypothetical protein Rpic_1605 1694497 - 1696572 + | band 7 protein TERM 1371 1696624 - 1696637 + G 73 -5.9 -4.42386 | ACGGAGCATTGGCGT GGTGC CGGG GCGCC TTTTCTGCGTCAGCG Rpic_1606 1696582 - 1696968 + | hypothetical protein TERM 1372 1697002 - 1697034 + F 100 -17 -3.60098 | GCCGTGTCGAGTTGA GGTCGTGGGCGTGC CACCA GTGCGCCCACGGCC TTTGCCGTGCGAAGT TERM 1373 1697146 - 1697133 - g 85 -8.1 -4.67234 | ACCCAAGCCCAAAAA GCCAC TCAG GTGGC GGATTCTCGCCCTCA Rpic_1607 1697107 - 1697490 + | hypothetical protein TERM 1374 1697795 - 1697779 - f 81 -5.7 -4.8048 | overlap 1697780 1697781 CCGGGATAGGAAAAA CGCCGGC TGC GCCGGTA GAAGGAAACAGACCA Rpic_1608 1697810 - 1698235 + | hypothetical protein Rpic_1609 1698244 - 1698477 + | hypothetical protein Rpic_1610 1698488 - 1698652 + | hypothetical protein Rpic_1611 1698668 - 1698964 + | hypothetical protein TERM 1375 1699195 - 1699227 + F 100 -17.8 -5.40072 | gap 1, overlap 1699191 1699217 CTTCTCCCCCCCTTA CGGGCCC-TCACGCC CGTA GGTGTGATGGGCCCG TTTTTTTCGAGGCCC TERM 1376 1699608 - 1699632 + G 71 -12.1 -3.27298 | opp_overlap 1699607 1699603 GGGCGTAGAAGTCAT CGTTCGCACGG ATG CTGGGCGAACG TTGGTCGTTACCCAG Rpic_1612 1699342 - 1699725 + | putative outer membrane lipoprotein transmembrane Rpic_1613 1699796 - 1700032 + | hypothetical protein Rpic_1614 1700043 - 1700276 + | hypothetical protein TERM 1377 1700351 - 1700302 - f 82 -14.3 -3.27022 | opp_overlap 1700310 1700344 1700345 TCCATCCCATAGCAA GCCCGAGAGGGCTTGCCCAACTG CCAA CAGTTGGGCAAGCGCTTTTGATC GCGTCACCGACGCAT TERM 1378 1700310 - 1700343 + F 100 -19.7 -4.26903 | opp_overlap 1700302 ATAGCAAGCCCGAGA GGGCTTGCCCAACTG CCAA CAGTTGGGCAAGCGC TTTTGATCGCGTCAC Rpic_1615 1700458 - 1700838 + | hypothetical protein Rpic_1616 1700851 - 1701321 + | hypothetical protein Rpic_1617 1701324 - 1701419 + | hypothetical protein TERM 1379 1701459 - 1701478 + F 100 -13.6 -5.82388 | opp_overlap 1701456 1701459 AGCCACACCAAATGA CGCACCCA TTCG TGGGTGCG TTTTTTTTGCCGTTT TERM 1380 1701478 - 1701459 - f 76 -13.6 -3.00138 | opp_overlap 1701459, overlap 1701456 AGCCACACCAAATGA CGCACCCA TTCG TGGGTGCG TTTTTTTTGCCGTTT Rpic_1618 1701539 - 1702048 + | hypothetical protein Rpic_1619 1702171 - 1702551 + | hypothetical protein TERM 1381 1702581 - 1702616 + F 85 -17.6 -2.93073 | gap 1, overlap 1702578 1702606 TTCCTTCCATCCCAC CAGGGGCAAT-CGCCCC GGT GGGGCGCGTTGCCCCAG TCCTTATTGGAGCAA Rpic_1620 1702637 - 1704175 + | hypothetical protein TERM 1382 1704193 - 1704232 + F 73 -9.2 -3.87869 | gap 1 CCAATCTCTTTCACG CGCCAGTCCCTGCCCCT CCATCAC GGGGGCAGGG-CGGCCG TTTCTACCCCCTTGC TERM 1383 1704297 - 1704332 + F 72 -2.4 -4.74132 | opp_overlap 1704297 1704296, overlap 1704300 CTCCTTGCTGAAAAG CGCTGTTCGGACTGGC CTGA GCCAACCCAAACACTG TTTTTCCTCGCGTCT TERM 1384 1704368 - 1704382 + F 71 -7 -4.16016 | GCATCGATCCAACGC CGGCAG CAT CGGCCG TTTCTTCAACCATCC TERM 1385 1704396 - 1704435 + F 100 -13.6 -4.2717 | gap 1, opp_overlap 1704395, overlap 1704391 CGTTTCTTCAACCAT CCCACAGGGGTCTACTCCC TGT GGGCGTGGATTCC-GTGGG TTTTCGTCAAGTGAT TERM 1386 1704942 - 1704896 - g 76 -13.7 -3.14132 | opp_overlap 1704897 1704912 CTTGGCGGCGACGAA TCGCCGGACCGACAACGCCGG CGTGT CTGGCATTCTCGATCCGGTGA AGTCGCGGTTTGCGA Rpic_1621 1704456 - 1705520 + | AAA ATPase TERM 1387 1705551 - 1705572 + F 100 -17.3 -4.54727 | opp_overlap 1705545 AGCAGTACATCCCAT GCGGCGAGC TTTG GCTCGCCGC TTTTCATTTCAAGAG TERM 1388 1706180 - 1706156 - g 75 -13.6 -3.02144 | overlap 1706172 TCAGCGCGGTCAAGA CGGCCAACGA AGACA TCGTCGGCCG CCTCTACGACGCTGT TERM 1389 1706467 - 1706447 - g 77 -16.1 -2.62184 | opp_overlap 1706462 TGGCGGTGTACATGA CCGGCGCGC TCA GCACGCCGG CAGCACCGGCACTTG Rpic_1622 1705597 - 1706520 + | hypothetical protein Rpic_1623 1706530 - 1707747 + | hypothetical protein TERM 1390 1707752 - 1707773 + F 100 -17.3 -4.49556 | overlap 1707761 1707764 TCATCGTCTGACCAT TGCCCCGGG CCAT CCCGGGGCA TTTCTTTGCTCCGGC Rpic_1624 1707894 - 1708295 + | hypothetical protein TERM 1391 1708409 - 1708425 + G 100 -10.8 -5.71295 | opp_overlap 1708405 1708409 GGGGGTGCAAACCAA GGGGGC CAAGT GCCCCC TTTTTCTTTTTCTAT Rpic_1625 1708308 - 1708445 + | hypothetical protein Rpic_1626 1708757 - 1708470 - | hypothetical protein Rpic_1627 1709567 - 1708878 - | hypothetical protein Rpic_1628 1710309 - 1709578 - | hypothetical protein Rpic_1629 1710448 - 1710320 - | hypothetical protein Rpic_1630 1710852 - 1710469 - | protein of unknown function DUF583 Rpic_1631 1711543 - 1710863 - | hypothetical protein TERM 1392 1711404 - 1711460 + g 78 -15.8 -2.74192 | gap 1, opp_overlap 1711398 1711444 TTCAAGGCAGGCTTG TGCTGGTCCCACCGGCGCTTGCCGCCG GCGG CGTAGGTAAGGGCCGGTGCGGCC-GCA TGATCTTCCGCCGTG Rpic_1632 1712324 - 1711737 - | hypothetical protein TERM 1393 1712021 - 1712033 + g 74 -4.8 -4.56597 | overlap 1712015 GGCTTTTGTTCGCGT GCCA CGCGA TGGC TTTTTCGAACCAAAG TERM 1394 1712844 - 1712881 + H 95 -15.6 -3.85698 | gap 1 ATTGGCACGACGCTC CCTGTGAGCCACGCCCC CGAAA GGGGCGTGGCA-GCAGG TTTCTCACAAGAAGC TERM 1395 1712887 - 1712928 + H 90 -18.9 -3.10597 | gap 1, opp_overlap 1712895, overlap 1712895 TGGCAGCAGGTTTCT CACAAGAAGCCCGCTTCCGG TTA CCGG-AGCGGGCTTTTTTTG CTTTTAAGTGAGAGA TERM 1396 1712895 - 1712920 + H 100 -16.9 -5.79588 | gap 1, opp_overlap 1712895, overlap 1712887 GGTTTCTCACAAGAA GCCCGCTTCCGG TTA CCGG-AGCGGGC TTTTTTTGCTTTTAA TERM 1397 1712920 - 1712895 - H 100 -16.9 -3.78934 | gap 1, opp_overlap 1712887 1712895 GGTTTCTCACAAGAA GCCCGCTTCCGG TTA CCGG-AGCGGGC TTTTTTTGCTTTTAA TERM 1398 1713222 - 1713202 - gH 70 -10.5 -3.53091 | opp_overlap 1713210 ACCCTTCGTTCCAAA GTCGTTCAG TAC CTGAACAAC AGGAGCGTTTCATGC Rpic_1633 1712965 - 1713282 + | hypothetical protein Rpic_1634 1713234 - 1714511 + | hypothetical protein TERM 1399 1714550 - 1714575 + F 100 -11.8 -5.60556 | opp_overlap 1714547 CGTAGCATCAACGTG CGGCGTCGAG AGTTCC CCCGACGCCG TTTTTCTTTTCTGTT Rpic_1635 1714633 - 1716045 + | DNA repair exonuclease-like protein TERM 1400 1716047 - 1716083 + F 84 -11.5 -4.09243 | overlap 1716051 CCTTGAACGTGTGAG CCACGTTCCGACAGCCT TCG GGGCTGTCGAAACTCGG TTTTCCCCGCGTCTA TERM 1401 1716051 - 1716079 + F 73 -13.9 -2.74605 | overlap 1716047 GAACGTGTGAGCCAC GTTCCGACAGCCT TCG GGGCTGTCGAAAC TCGGTTTTCCCCGCG TERM 1402 1716419 - 1716377 - g 91 -17.1 -3.53444 | gap 1, opp_overlap 1716381, overlap 1716378 TCATGGCTGTCGAAA CGGACGGTGAGCGC-ACGGT TTTT ACCGTGGCGCCCACGGTCCA GGTGCAGAACCTTCT TERM 1403 1716418 - 1716378 - g 87 -18.4 -2.71924 | gap 1, opp_overlap 1716381, overlap 1716377 CATGGCTGTCGAAAC GGACGGTGAGCGC-ACGGT TTTT ACCGTGGCGCCCACGGTCC AGGTGCAGAACCTTC TERM 1404 1716381 - 1716394 + G 70 -2.3 -4.62069 | opp_overlap 1716378 1716377 GGCTGTCGAAACGGA CGGTG AGCG CACGG TTTTTACCGTGGCGC Rpic_1636 1716190 - 1716702 + | hypothetical protein Rpic_1637 1716684 - 1719008 + | putative ATPase involved in DNA repair TERM 1405 1719025 - 1719051 + F 100 -13.1 -6.3578 | gap 1, opp_overlap 1719024 TTCCACCAACCATAT TGGTCCGCTCTC ACCA GAG-GCGGACCA TTTTTTTTTTGAGAT Rpic_1638 1719101 - 1719346 + | hypothetical protein TERM 1406 1719755 - 1719744 - g 79 -5.8 -4.59109 | overlap 1719746 TATATCGGCGAAAAA CTCG CCGT CGAG ACACCAACGATCGCC TERM 1407 1721760 - 1721774 + G 71 -10 -3.65425 | overlap 1721757 GTGGGGATGGCGGTG GCCAAG CTA CTTGGC TTTGACCTCTGTCCC Rpic_1639 1719504 - 1722437 + | transposase Tn3 family protein Rpic_1640 1723499 - 1722537 - | integrase family protein Rpic_1641 1725452 - 1723524 - | iron permease FTR1 Rpic_1642 1726028 - 1725597 - | transcriptional regulator, MerR family Rpic_1643 1726116 - 1728518 + | heavy metal translocating P-type ATPase Rpic_1644 1728515 - 1729120 + | phosphoesterase PA-phosphatase related TERM 1408 1729129 - 1729170 + T 91 -13.5 -3.95584 | TGGCTGATTCCGCAG CATGCAGCGGCGCACGACC GATG GGCCGTGCGCCGCCGAGGG TTTACTTGCTCCGCA TERM 1409 1729215 - 1729188 - T 70 -9.8 -3.53224 | overlap 1729192 TACTTGCTCCGCAAA TCGACGACGGTC GGCT GACCGTCGACCA TATCAAAGACGGCCC TERM 1410 1729211 - 1729192 - T 72 -13.6 -2.64155 | overlap 1729188 TGCTCCGCAAATCGA CGACGGTC GGCT GACCGTCG ACCATATCAAAGACG Rpic_1645 1729510 - 1729172 - | conserved hypothetical signal peptide protein TERM 1411 1729395 - 1729418 + g 71 -11.8 -3.28119 | gap 1, overlap 1729384 GCCACGGGCTTGGGC GCCTGCTTGGT TTG ACCA-GCAGGC TTCATGTCCATACCT Rpic_1646 1732674 - 1729507 - | heavy metal efflux pump, CzcA family Rpic_1647 1734221 - 1732671 - | efflux transporter, RND family, MFP subunit Rpic_1648 1735522 - 1734218 - | outer membrane efflux protein TERM 1412 1735093 - 1735133 + g 71 -12 -3.24232 | opp_overlap 1735076, overlap 1735078 1735091 1735121 GGTCAAGCCAGGCTT GCGCTGT-GCTGCGCTGG ACGGCTG CCAGCGCGGCGACA-CGC TGTGTTTCGGCCGCG TERM 1413 1735272 - 1735296 + g 71 -14.3 -2.71791 | opp_overlap 1735259, overlap 1735262 1735271 AACCGGTCGCTGCCA TCGGCGGGAAC ATT GTTCACGCCGA ATTTGAGGACAGGGT Rpic_1649 1736013 - 1735594 - | hypothetical protein TERM 1414 1736122 - 1736163 + r 73 -8.7 -3.9243 | gap 1, opp_overlap 1736112 GCAAACGTGCCATCG CGCGAT-GGGCGTCCTGC CGATAAT GCAGAACGCCCCACCGTG TTATTTCGGCGCTTG TERM 1415 1736185 - 1736222 + r 77 -8.3 -4.42788 | CGGCGCTTGAATCAT GTCTTGGCAGGGCTGCG GCAT CGCAGGCATGCCAGCGC TTTTCTGCGCTTGCG Rpic_1650 1736364 - 1736164 - | hypothetical protein Rpic_1651 1736855 - 1736484 - | hypothetical protein TERM 1416 1736934 - 1736898 - R 78 -13.7 -3.17723 | opp_overlap 1736897 1736898 GTAGGTTCAAGCTAA CGGTCAGCAGGTATGCG TCA CGCACGCCTGTTGACCA ATTCTGGGCAGTATT TERM 1417 1736898 - 1736934 + r 72 -13.7 -2.58427 | opp_overlap 1736898, overlap 1736897 GTAGGTTCAAGCTAA CGGTCAGCAGGTATGCG TCA CGCACGCCTGTTGACCA ATTCTGGGCAGTATT Rpic_1652 1737471 - 1736971 - | hypothetical protein TERM 1418 1738476 - 1738489 + G 71 -4.5 -4.4891 | TACTTCGAGGTGTCC GCGGT CATC ATCGC TTTTGTGCTGCTGGG Rpic_1653 1737657 - 1740110 + | heavy metal translocating P-type ATPase TERM 1419 1740138 - 1740161 + G 71 -13.8 -2.77148 | overlap 1740136 1740134 GGTTCTGTGCCGCCG TGGCGACGGC GCTG GCCGCCGCCA TCCTCTATTGGTACG Rpic_1654 1740107 - 1740325 + | hypothetical protein Rpic_1655 1740340 - 1740639 + | YHS domain protein Rpic_1656 1740684 - 1740935 + | hypothetical protein Rpic_1657 1740938 - 1741600 + | hypothetical protein Rpic_1658 1743899 - 1742016 - | hypothetical protein TERM 1420 1743455 - 1743417 - G 70 -8 -3.95051 | overlap 1743422 1743424 GAAGAAGCTGACAAA GTAGACAGGATGGCCTTC GGC GAGGGCCATGCCGACTTC CGAATCGCGCTTGAA TERM 1421 1744079 - 1744054 - R 89 -17.6 -3.18274 | opp_overlap 1744049 1744048 1744044 GTCAGGTGAATTGAA GCGCGGGCTC TTTTCT GAGCCCGCGC GCAGACTTACTTGGT Rpic_1659 1744331 - 1744086 - | hypothetical protein TERM 1422 1744141 - 1744181 + g 75 -10.1 -3.86015 | overlap 1744151 CCCTTGGTGTCCTCG GCGGGGGCGGCCGCCGGCG CGC TGGCGGCGGAAGCGCCAGC TTTCTCGGCGACGTG Rpic_1660 1744822 - 1745046 + | hypothetical protein Rpic_1661 1745086 - 1745859 + | hypothetical protein Rpic_1662 1745856 - 1746560 + | ABC transporter related TERM 1423 1747877 - 1747915 + G 86 -10.3 -4.24745 | opp_overlap 1747868 AATCCACGCCGCACG GCCCTC-ATGGCCGCAGGC GCT GCCTTCGGC-ATCGTGGGC TTTGTCTTCATCCTG Rpic_1663 1746557 - 1748164 + | protein of unknown function DUF214 Rpic_1664 1749370 - 1748360 - | sodium/calcium exchanger membrane region TERM 1424 1750152 - 1750175 + H 74 -12.4 -3.14564 | overlap 1750135 GACACGGCCATGTGG CCGCGTACGC GTTT GCGTGCGTGG TTCCTGGGAGGCTCG TERM 1425 1750795 - 1750776 - g 75 -4.2 -4.60797 | overlap 1750777 CGGTGACACAGAAAA GGTCGACG CCGA CTTCAACC AGTTCGCTGACGTGG Rpic_1665 1750240 - 1751688 + | Carbohydrate-selective porin OprB TERM 1426 1751784 - 1751814 + F 75 -13.3 -2.91912 | opp_overlap 1751807 1751811, overlap 1751766 1751800 1751803 1751804 GCACGGTTTTCCCTG CTGCTGACTTGCC GCCCA GGCAAGGCAGCGG TGTCTGCATCGCTCC TERM 1427 1751800 - 1751836 + F 71 -8.8 -3.70902 | gap 1, opp_overlap 1751807 1751811, overlap 1751784 1751803 1751804 TGCTGACTTGCCGCC CAGGCAAGGCAGCGGTG TCTG CATCGCT-CCTTGATTG TTTGAATCTGCCGCC Rpic_1666 1751925 - 1752131 + | hypothetical protein Rpic_1667 1752175 - 1753818 + | natural resistance-associated macrophage protein Rpic_1668 1754269 - 1753850 - | hypothetical protein TERM 1428 1753921 - 1753946 + g 81 -7.5 -4.57073 | GTTGCTCGCAATCCC GGATGTTCACG TATA CGTGCGCGTCC TTTTTCAACGGGCTG TERM 1429 1754489 - 1754477 - H 70 -4.1 -4.68645 | opp_overlap 1754471, overlap 1754478 GAGTGAAAACGAAAA CGCAT CTC ATGCA GGTTTTCGTTTGCGT Rpic_1669 1754572 - 1755360 + | hypothetical protein Rpic_1670 1756917 - 1755400 - | RND efflux system, outer membrane lipoprotein, NodT family TERM 1430 1756485 - 1756515 + g 72 -13.2 -3.14881 | opp_overlap 1756485 1756486, overlap 1756488 1756489 TGAGCGTGGGCGAAA TCGTGCCGACGGCG TTT TGCTGTCGGCTCGG TTGATACGAGCCTTG TERM 1431 1756488 - 1756498 + g 70 -4.6 -4.35116 | opp_overlap 1756486 1756485, overlap 1756485 1756489 GCGTGGGCGAAATCG TGCC GAC GGCG TTTTGCTGTCGGCTC Rpic_1671 1757121 - 1758275 + | efflux transporter, RND family, MFP subunit Rpic_1672 1758288 - 1761452 + | heavy metal efflux pump, CzcA family Rpic_1673 1762087 - 1761482 - | two component transcriptional regulator, LuxR family Rpic_1674 1762165 - 1763772 + | integral membrane sensor signal transduction histidine kinase Rpic_1675 1764692 - 1763769 - | cation diffusion facilitator family transporter Rpic_1676 1765989 - 1765036 - | hypothetical protein Rpic_1677 1767425 - 1766121 - | cation diffusion facilitator family transporter Rpic_1678 1767711 - 1767433 - | protein of unknown function DUF156 Rpic_1679 1768066 - 1768713 + | TnsA endonuclease TERM 1432 1770490 - 1770472 - g 82 -4.4 -5.00616 | overlap 1770477 CTGCCGCTGAAAAAA GCAAGGCG GCA CGTCGTGC TGAGCAGCAGCGCAA Rpic_1680 1768716 - 1770638 + | TniA transposase TERM 1433 1770820 - 1770798 - g 77 -12 -3.68351 | opp_overlap 1770795 1770798 GCTCGACTATCCAAA GGTAACGCGG ATG CCGAGTTACC TGATTGTTGGTCCGT Rpic_1681 1770631 - 1771536 + | TniB family protein Rpic_1682 1771533 - 1772594 + | hypothetical protein Rpic_1683 1774244 - 1772562 - | hypothetical protein TERM 1434 1774171 - 1774216 + g 71 -4 -4.56775 | gap 1 CGCACCATGCGATCG GGGAAGGC-GATGGGGC CGAACCAATCCAC GCGCCAACGGCCTTCCC TTTTTGGAAACGCGT Rpic_1684 1774687 - 1774334 - | hypothetical protein TERM 1435 1777447 - 1777481 + G 79 -10.1 -4.1822 | gap 2 TTGACCCAGAGCTAG GATCTCTCGCGCGCGAG CTT CTC-CG-GCGAGCGATC TTTATTGAGCTACAA Rpic_1685 1775130 - 1777739 + | hypothetical protein TERM 1436 1777986 - 1778000 + G 81 -3.4 -5.06816 | TGGGGATGCCATCCG CGGGGC TCT GTCGCG TTTTTGTTCCGAAAT Rpic_1686 1777732 - 1778949 + | hypothetical protein TERM 1437 1778959 - 1779006 + T 82 -9.2 -4.42653 | gap 1, opp_overlap 1778975, overlap 1778963 TGTTAGCGCTGTTTT TTTTGCGCTGTGAGAAGGTCCCA TTC TTGGACCTTCTCGC-GCACTAGA TTTTGTGCATCGACT Rpic_1687 1780157 - 1778946 - | hypothetical protein Rpic_1688 1781105 - 1780329 - | metallophosphoesterase TERM 1438 1780748 - 1780761 + g 78 -4.5 -4.84311 | gap 1 GACCAGCGTAGCCTT CG-GCG GTA CGCACG TTTTCTTCTGTACCC Rpic_1689 1781310 - 1781083 - | hypothetical protein Rpic_1690 1782646 - 1781426 - | AAA ATPase central domain protein TERM 1439 1781690 - 1781671 - G 79 -10 -4.08216 | overlap 1781674 GCACCTCCGCCAAAA CAAGCAGC AACC GCTGCTCG GGCTCAGGTGCCGGG TERM 1440 1781687 - 1781674 - G 71 -8.1 -4.17048 | overlap 1781671 CCTCCGCCAAAACAA GCAGC AACC GCTGC TCGGGCTCAGGTGCC TERM 1441 1782080 - 1782090 + g 82 -6.8 -4.62783 | overlap 1782079 CTCTGCCAACTTCAG CGCA AAG TGCG TTTTTCCAATGCCTG TERM 1442 1782456 - 1782481 + g 70 -4.7 -4.36914 | overlap 1782424 1782459 GCCACAGCCGGTCCA GCAGATGAGGA TTCA TGCTCATCTTC TTTTATCACCGCAAG TERM 1443 1782709 - 1782695 - H 72 -12.8 -3.07816 | GCCGCAGCCATCGAA CCCGGC AAC GCCGGG AGCCGAAGAAGCCCG TERM 1444 1782969 - 1783002 + H 71 -8.9 -3.72576 | gap 1, opp_overlap 1782988, overlap 1782970 1782972 GACGACGTGATGGGC GGATGCGCTGCGC-AT CAA ATGGTGCGGCGCATCA TTTCGTAGAGCCGAA Rpic_1691 1783200 - 1784087 + | protein of unknown function DUF214 Rpic_1692 1784080 - 1785225 + | hypothetical protein Rpic_1693 1785322 - 1787019 + | ABC-1 domain protein Rpic_1694 1788254 - 1787070 - | Methionine adenosyltransferase Rpic_1695 1788509 - 1789132 + | LemA family protein Rpic_1696 1789129 - 1789989 + | protein of unknown function DUF477 Rpic_1697 1789989 - 1790489 + | protein of unknown function DUF477 Rpic_1698 1790541 - 1791017 + | hypothetical protein Rpic_1699 1791422 - 1791174 - | hypothetical protein TERM 1445 1791559 - 1791534 - H 70 -10.5 -3.54424 | gap 1, opp_overlap 1791533 CGTCATTCGGGCAAA GGATC-GCGCAA TAG TCGCGCTGATCC ATGTCCTCCTGAATT Rpic_1700 1791771 - 1792631 + | protein of unknown function DUF344 Rpic_1701 1792708 - 1793313 + | hypothetical protein Rpic_1702 1795570 - 1793426 - | ATP-dependent metalloprotease FtsH Rpic_1703 1795745 - 1797340 + | 67 kDa myosin-cross-reactive antigen family protein Rpic_1704 1797481 - 1797858 + | hypothetical protein Rpic_1705 1798112 - 1798405 + | Heavy metal transport/detoxification protein TERM 1446 1798604 - 1798616 + G 73 -6.2 -4.36554 | CCGGGCACATCTGTT CGGC TGGTT GCCG TTTCTTCTACTGCTG Rpic_1706 1798479 - 1798793 + | hypothetical protein Rpic_1707 1798817 - 1799482 + | isoprenylcysteine carboxyl methyltransferase Rpic_1708 1799499 - 1800863 + | beta-lactamase domain protein TERM 1447 1801500 - 1801538 + G 74 -15.2 -2.64155 | opp_overlap 1801521, overlap 1801497 1801496 TTACCTCGCCGGCTG GCACCGCCGACGTGATCG AAA CGATGACGCCGGTGGCGC TCGATTTGGAGCAGA TERM 1448 1801549 - 1801585 + G 75 -9.4 -4.03234 | gap 1, opp_overlap 1801554 GGCGCTCGATTTGGA GCAGATGCGC-CGCGTT GTCC AACGCGAGGGCGGCTGC TTTGTCTGGGGAGGC Rpic_1709 1800860 - 1802374 + | thymidine phosphorylase TERM 1449 1802634 - 1802604 - g 71 -11.9 -3.28712 | gap 1, opp_overlap 1802585 1802605, overlap 1802605 GGCCGCCCGGGAGAA CGGTGCGACC-GAC GTTG GTCTGGTCGCACCT TACCTCGCCTACATG TERM 1450 1802605 - 1802633 + G 82 -15.4 -3.06915 | gap 1, opp_overlap 1802604 1802605, overlap 1802585 GCCGCCCGGGAGAAC GGTGCGACC-GAC GTTG GTCTGGTCGCACC TTACCTCGCCTACAT TERM 1451 1802633 - 1802605 - g 77 -15.4 -2.57132 | gap 1, opp_overlap 1802585 1802605, overlap 1802604 GCCGCCCGGGAGAAC GGTGCGACC-GAC GTTG GTCTGGTCGCACC TTACCTCGCCTACAT TERM 1452 1802812 - 1802860 + G 70 -11 -3.30124 | gap 1 CGTCACGTCCACGCG GCGCCGGCTGTGGCGGCATGG CTGCGCGC CCATGT-GACACGCCCGGCGC TTGTGGGCCCTGACG TERM 1453 1803102 - 1803120 + G 71 -8.1 -4.07568 | GGCCGCGCCTGTGTG CATCGCG ATTCA CGCGGTG TTTTCAGGCAACGCG Rpic_1710 1802371 - 1803276 + | ribose-phosphate pyrophosphokinase TERM 1454 1803825 - 1803803 - g 73 -9.1 -3.83026 | CTGGGTGAGATCAAA CCGGATGCG GGCTT CGCATCCCG GGTCGCCCGGCGCTT Rpic_1711 1803419 - 1804762 + | Cyclopropane-fatty-acyl-phospholipid synthase Rpic_1712 1804767 - 1805417 + | hypothetical protein Rpic_1713 1805414 - 1807858 + | heavy metal translocating P-type ATPase TERM 1455 1808405 - 1808441 + G 74 -12.9 -3.21747 | overlap 1808406 GCTGATGGGCATGCC TGCAGGCCAGATGCCCA GTA TGGTCAACTGGCCCGCG TTGGTGGTCGCATCG TERM 1456 1808406 - 1808440 + G 70 -14.2 -2.52834 | overlap 1808405 CTGATGGGCATGCCT GCAGGCCAGATGCCCA GTA TGGTCAACTGGCCCGC GTTGGTGGTCGCATC Rpic_1714 1807866 - 1809173 + | major facilitator superfamily MFS_1 Rpic_1715 1809665 - 1809339 - | protein of unknown function DUF326 Rpic_1716 1810243 - 1810629 + | copper resistance protein CopC Rpic_1717 1812149 - 1810752 - | heavy metal sensor signal transduction histidine kinase Rpic_1718 1812835 - 1812149 - | two component heavy metal response transcriptional regulator, winged helix family TERM 1457 1813046 - 1813060 + G 73 -9.2 -3.88583 | opp_overlap 1813045 CTCGTGCTACCGAAC CTGCCG CGG CGGCGG TTTGTGCAAGGTTTG TERM 1458 1813080 - 1813098 + G 77 -12.4 -3.57792 | TGCAAGGTTTGGCTG CCGGCGGT GTC ATCGCCGG TTTGGGCCTGGGTGG Rpic_1719 1813007 - 1814902 + | copper-resistance protein, CopA family TERM 1459 1815723 - 1815753 + G 77 -11.8 -3.57119 | CAACGCGACGGTGGG CTTGCGGCTGCGCT ATG AGTTCAGCCGCCAG TTTGCGCCCTATATC TERM 1460 1815825 - 1815845 + G 75 -4.5 -4.65078 | opp_overlap 1815817, overlap 1815826 1815831 1815835 GATCGAAGCGGCCGG TGGGCGCCG CGG CGACACCCG TTTTGTTGCGGGTGT Rpic_1720 1814902 - 1815876 + | copper resistance B precursor Rpic_1721 1815909 - 1816295 + | copper resistance protein CopC Rpic_1722 1816300 - 1817229 + | copper resistance D domain protein Rpic_1723 1817258 - 1817749 + | protein of unknown function DUF411 Rpic_1724 1819058 - 1817793 - | hypothetical protein TERM 1461 1819027 - 1819039 + g 71 -9.1 -3.80733 | CTGTCAGCTTTCCAT CGCTC AAT GAGCG TTCTTGTCAAATCGG Rpic_1725 1819389 - 1820864 + | hypothetical protein TERM 1462 1820908 - 1820888 - T 100 -16.9 -3.55444 | opp_overlap 1820888 GCCTCAGTTGCGAAA GAGCCCCGA ACT TCGGGGCTC TTTTTTTTCGAGCCT TERM 1463 1820888 - 1820908 + T 100 -16.9 -5.75945 | opp_overlap 1820888 GCCTCAGTTGCGAAA GAGCCCCGA ACT TCGGGGCTC TTTTTTTTCGAGCCT Rpic_1726 1821690 - 1821025 - | hypothetical protein TERM 1464 1821818 - 1821800 - R 76 -8.8 -4.09739 | TTAAGCCGCTCAAAA CTTGGGCT GGG AGCCCAGG CGGCGATGCGCGCCC TERM 1465 1821898 - 1821870 - R 78 -10.2 -3.87149 | overlap 1821864 1821888 CGTACCAAACGCAAA CGGTGCGCACGC GATCA ACGCGCGAACCG GAATCAACCGCTACA Rpic_1727 1822432 - 1821959 - | hypothetical protein Rpic_1728 1822578 - 1823156 + | 2'-5' RNA ligase Rpic_1729 1824149 - 1823256 - | integrase family protein Rpic_1730 1824543 - 1824325 - | histone family protein nucleoid-structuring protein H-NS Rpic_1731 1824700 - 1827699 + | transposase Tn3 family protein Rpic_1732 1827692 - 1828027 + | TnpC Rpic_1733 1829386 - 1828193 - | integrase family protein Rpic_1734 1830062 - 1829421 - | hypothetical protein TERM 1466 1829921 - 1829895 - G 71 -13 -3.01712 | opp_overlap 1829895 GCGCTGCCCCGAATA GGCTTTGCGCAC GTC GTACGCCAAGCC GAGCACGAAGCCTTC Rpic_1735 1830352 - 1830077 - | plasmid stabilization system Rpic_1736 1830615 - 1830352 - | transcriptional regulator, CopG family Rpic_1737 1831398 - 1830667 - | hypothetical protein TERM 1467 1831106 - 1831050 - G 71 -10.8 -3.64703 | overlap 1831051 GCTGGTGCAGGGAAA TGGCCGGCCCGGTGGGCTT-GCCGTTCA CGA TGT-CGCCCAAGACCACCGAGCCGACCG TGCCGTGGAAGGTCA TERM 1468 1831105 - 1831051 - G 73 -14.3 -2.78679 | overlap 1831050 CTGGTGCAGGGAAAT GGCCGGCCCGGTGGGCTT-GCCGTTCA CGA TGT-CGCCCAAGACCACCGAGCCGACC GTGCCGTGGAAGGTC TERM 1469 1831702 - 1831728 + G 72 -2.8 -4.64766 | overlap 1831704 ACCGAGACGCGGGAG CTGTACCGCGAA GTC TGCGCGCTGCTG TTTTTCCGCTATGGC Rpic_1738 1831612 - 1832649 + | hypothetical protein TERM 1470 1833575 - 1833591 + G 78 -7.9 -4.4078 | overlap 1833576 GACCAGGTCAGGTGA CGCCCAG CTT CTGGGCA TTTTGCTTCGGCACC Rpic_1739 1833358 - 1833846 + | hypothetical protein Rpic_1740 1835612 - 1833933 - | integrase family protein TERM 1471 1834289 - 1834267 - G 73 -9.1 -3.89346 | opp_overlap 1834267 TCGGGACGCCACAAA CGCCGACTG ATGGG CAGTCCGCG TTCCGTCAGGTAGCG TERM 1472 1835417 - 1835394 - G 74 -11 -3.63515 | gap 1 CGGCATCTCGAACAA CGCGGCCA-GA TCG TCGCGGCCGCG CTCGCGTGCCAGCAA Rpic_1741 1837206 - 1835821 - | heavy metal sensor signal transduction histidine kinase TERM 1473 1835873 - 1835860 - G 70 -5.2 -4.33248 | overlap 1835861 GAAGGTCAGAATAAA GCGG GTGAGA CCGC CTGACGACTCAGCCG Rpic_1742 1837889 - 1837203 - | two component heavy metal response transcriptional regulator, winged helix family Rpic_1743 1838079 - 1838243 + | copper-resistance protein CopA Rpic_1744 1839174 - 1838848 - | protein of unknown function DUF326 Rpic_1745 1839803 - 1840969 + | FAD dependent oxidoreductase Rpic_1746 1842319 - 1840991 - | integrase family protein TERM 1474 1842424 - 1842391 - R 93 -17.5 -3.38768 | gap 1, overlap 1842392 GCAGAGCACGCAGAA CCCTGATGGCCTGGCC ATC GGCGAGGCCATC-GGG ATTGCGGGGACGCTA TERM 1475 1842424 - 1842392 - R 85 -17.7 -2.6294 | overlap 1842391 CAGAGCACGCAGAAC CCTGATGGCCTGGCC ATC GGCGAGGCCATCGGG ATTGCGGGGACGCTA TERM 1476 1842877 - 1842861 - R 88 -6.5 -5.00616 | opp_overlap 1842861, overlap 1842863 CTCGGCCTCAAAAAA GCGAAGC GGG GCTTCCC TTCTTGCGCCGGTCT Rpic_1747 1843487 - 1842924 - | small-conductance mechanosensitive channel-like protein TERM 1477 1843593 - 1843617 + r 72 -2 -4.72986 | gap 1 GCGACAACTTACATG CCGGCGTCGTG CCTA CACT-CACCGG TTTTTGATCGAGGTG Rpic_1748 1844026 - 1843586 - | transcriptional regulator, LuxR family TERM 1478 1844725 - 1844702 - H 74 -12.4 -3.1739 | AGAGCATTTGACCAA GCGCGGTAGC AGTG GCCACCGCAC ACCTGGACGGGCAGT TERM 1479 1845525 - 1845541 + G 78 -13.7 -3.19425 | overlap 1845515 TCCTGGCCGTTGGTG CGGCAGG CGT CCTGCCG TTCATGGGCTTGATT TERM 1480 1845992 - 1846009 + G 74 -12.7 -3.17763 | overlap 1845978 TCGCTGGCGACGCTG GCCAGCC TTCA GGCTGGC TTGATGGCGTCTCGG Rpic_1749 1844762 - 1846369 + | glycosyl transferase family 39 TERM 1481 1846460 - 1846504 + G 89 -16.4 -3.2963 | CGCTGGTCGGTTTCG GGGTTGCAGCGCTACCGGCG TCTGC CGCCGGCAGTGTTGCAGGCC TTCTGACGCACTACT Rpic_1750 1846366 - 1846749 + | GtrA family protein Rpic_1751 1846746 - 1847867 + | glycosyl transferase family 2 Rpic_1752 1848100 - 1848402 + | hypothetical protein Rpic_1753 1850949 - 1848460 - | heavy metal translocating P-type ATPase TERM 1482 1848758 - 1848804 + g 84 -12.9 -3.75153 | gap 1, overlap 1848754 1848759 ATGCCCACCGTGGCG TTGGCCATTGCCGGCG-CGTCG TTGA CGCCGTCGCCGACCATGGCCAC TTTGGCTTCCGCGCG TERM 1483 1848759 - 1848803 + g 84 -16.4 -2.84878 | gap 1, overlap 1848754 1848758 TGCCCACCGTGGCGT TGGCCATTGCCGGCG-CGTCG TTGA CGCCGTCGCCGACCATGGCCA CTTTGGCTTCCGCGC TERM 1484 1851525 - 1851481 - g 86 -3.5 -5.16237 | gap 1, overlap 1851482 1851483 1851494 AAGCCGATCAAAAAA GCCTACGAGCAGAGGCCTGA GGCCGT CCAGGCCTG-GCTCGAAGAT GAATACCCCGCCATC Rpic_1754 1851043 - 1852101 + | ISXo7 transposase Rpic_1755 1852991 - 1852569 - | flagellar basal-body rod protein FlgB Rpic_1756 1853288 - 1854355 + | porin Gram-negative type TERM 1485 1854403 - 1854422 + F 100 -13.6 -5.60993 | ATTCAAGAGAGTTTG TGCCTCCC AACC GGGAGGCA TTTTTTTATGACAGG Rpic_1757 1854538 - 1854816 + | hypothetical protein TERM 1486 1854856 - 1854884 + T 72 -11 -3.3062 | overlap 1854853 1854851 1854881 CCGACCTCTGTGGGG GAGCCAGGCACC CGTCA GTTGCTTGGCTC TTGGTGCTCTTTCGC TERM 1487 1854927 - 1854950 + T 100 -16.8 -5.47821 | opp_overlap 1854918 GCGAAAGCTTCCGAA GCTTGCCCTC CCCG GAGGGCAAGC TTTTTTTCCCTCCAT TERM 1488 1855090 - 1855070 - T 100 -18.3 -4.7871 | opp_overlap 1855070 AATGACGATGAAAAA GGCCCCGCA TTG TGCGGGGCC TGTAGTTCACCGGTT TERM 1489 1855070 - 1855090 + T 86 -18.3 -2.90571 | opp_overlap 1855070 AATGACGATGAAAAA GGCCCCGCA TTG TGCGGGGCC TGTAGTTCACCGGTT Rpic_1758 1855510 - 1855115 - | hypothetical protein Rpic_1759 1857055 - 1855625 - | heavy metal sensor signal transduction histidine kinase TERM 1490 1855935 - 1855917 - G 71 -10.2 -3.67775 | ATGTCGATGCAACAA TGTGCCGC TTC GCGGCGCA CCACCAGATCTATCA TERM 1491 1856774 - 1856761 - G 83 -5.9 -4.86731 | overlap 1856763 CCGTGCGAAACAAAA GCCGG CCAT CCAGC GCCGTGACGCGAACG TERM 1492 1856879 - 1856893 + g 73 -5.7 -4.35524 | opp_overlap 1856878 CTCGCGCAAGAAATG CTCGA CCTGT TCGAG TTTTCCCTTTACAAC Rpic_1760 1857737 - 1857060 - | two component heavy metal response transcriptional regulator, winged helix family Rpic_1761 1858689 - 1857739 - | cation diffusion facilitator family transporter TERM 1493 1858730 - 1858707 - R 100 -12.5 -4.86033 | opp_overlap 1858705 AAACTCCTATAAAAA TTGGGCGGT ACGATG ACCGCCCAA GGATTTACGTCATGC Rpic_1762 1861931 - 1858740 - | heavy metal efflux pump, CzcA family Rpic_1763 1863510 - 1861948 - | Membrane Fusion Protein cluster 2 protein TERM 1494 1862774 - 1862742 - G 73 -9.7 -3.85698 | opp_overlap 1862741 1862740 1862744 TGCGCTGGTCAGAAA GTCCGGTGCTCGCGA TGA CCGCGAGAACCTGTC CCTTCTTAACCTGTT TERM 1495 1863472 - 1863487 + g 87 -6 -5.09762 | GCCCACCAGTACGAT GGCCGC AATG GCAGCC TTTTGTTTGTTCGAA Rpic_1764 1864784 - 1863528 - | outer membrane efflux protein TERM 1496 1864878 - 1864842 - H 83 -4.2 -5.05228 | overlap 1864817 1864844 1864845 ACGAAAGGAGAAAAA GAGTCGTCGTCTCGCC GATCA AGCGAGACGCTGCCAC TGAGGACGGTCGGGA Rpic_1765 1864926 - 1865249 + | hypothetical protein Rpic_1766 1865492 - 1865313 - | hypothetical protein Rpic_1767 1866376 - 1865522 - | Isoprenylcysteine carboxyl methyltransferase TERM 1497 1866594 - 1866608 + G 76 -2.1 -4.94902 | gap 1, overlap 1866583 CTCACATGCTCGTCG CGC-TG GGGG CATGCG TTTTTGTCGTGGTTC Rpic_1768 1866422 - 1866880 + | MgtC/SapB transporter Rpic_1769 1866988 - 1867395 + | hypothetical protein Rpic_1770 1867659 - 1867483 - | hypothetical protein TERM 1498 1868915 - 1868889 - g 77 -10.9 -3.72695 | gap 2, overlap 1868890 AGCTCCTGCAGGAAA CCGCGCACCAGCG CGA CGC-GGTGCG-GG CCGAGCGCGCGCAAC Rpic_1771 1868258 - 1869196 + | hypothetical protein Rpic_1772 1869193 - 1869474 + | phage integrase-like protein SAM-like protein Rpic_1773 1870582 - 1869590 - | putative cointegrate resolution protein T TERM 1499 1870776 - 1870802 + H 80 -10.9 -3.72695 | gap 1, opp_overlap 1870769 GTCAGAATCGTCGTA GC-GATGGCGCG CACG TGCGCCATCCGC TTTCCTCCCCAAGAT Rpic_1774 1870953 - 1872407 + | hypothetical protein Rpic_1775 1873485 - 1872997 - | protein of unknown function DUF411 Rpic_1776 1874446 - 1873517 - | copper resistance D domain protein Rpic_1777 1874837 - 1874451 - | copper resistance protein CopC Rpic_1778 1875868 - 1874870 - | copper resistance B precursor Rpic_1779 1877706 - 1875868 - | copper-resistance protein, CopA family Rpic_1780 1877879 - 1878565 + | two component heavy metal response transcriptional regulator, winged helix family Rpic_1781 1878565 - 1879962 + | heavy metal sensor signal transduction histidine kinase Rpic_1782 1880205 - 1880438 + | hypothetical protein TERM 1500 1880470 - 1880490 + T 81 -14 -3.28791 | opp_overlap 1880480 1880483 CCCCCTTTCCTCACA CCCCGGAG AACCA CTCCGGGG TTCTCCGGGGGCAGT TERM 1501 1880756 - 1880774 + T 75 -8 -4.2416 | AGCTACCCGGCTACT CCGCGTCG GTA CTGCGCGG TTCTTTCTTCCCTTG Rpic_1783 1881185 - 1880751 - | transcriptional regulator, MerR family Rpic_1784 1881257 - 1881607 + | Mercuric transport protein MerT Rpic_1785 1881621 - 1881893 + | mercuric transport protein periplasmic component Rpic_1786 1881922 - 1882341 + | MerC mercury resistance protein TERM 1502 1882648 - 1882606 - g 72 -3.3 -4.62069 | gap 2, overlap 1882627 CCGCCAGTGGAAAAA CGC-GGCAA-CCTGCTCGACA AGG CGCTGGGCTGGCTTGCCAGCG GTGAGAAATCCGCAG TERM 1503 1883479 - 1883438 - g 71 -10.8 -3.57144 | gap 1, overlap 1883439 CCGGGCACGGTGAAA TCCGCGC-CGACCAGTTGC TGGTC GCCACCGGCCGCGCGCCGA ACACGCGTGAGCTGG Rpic_1787 1882384 - 1884069 + | mercuric reductase Rpic_1788 1884087 - 1884449 + | mercuric resistence transcriptional repressor, MerD, MerR family Rpic_1789 1884502 - 1885158 + | alkylmercury lyase TERM 1504 1885862 - 1885880 + G 75 -6.7 -4.38712 | GTCCGATGCGGCGTC GCGGGTT ACCTC AATCCGC TTTTGTGACGATGCC Rpic_1791 1885419 - 1886093 + | cytochrome c class I Rpic_1792 1888109 - 1886172 - | Protein-disulfide reductase TERM 1505 1886240 - 1886222 - G 75 -7.4 -4.2558 | GACTGTCGAGGAAAA GGCTTGCA GAC TGGAAGCC GATCACCCGCACCGG TERM 1506 1887216 - 1887190 - G 71 -7.8 -4.08767 | GCCAGCGCGGCAAAA GCCCCCAGCGCC CAC GGCGCCTGCAGC CTCGCCGAAAGTCTC TERM 1507 1887537 - 1887559 + g 75 -14.8 -2.74012 | opp_overlap 1887496 1887494 1887532 1887533 GCTGGGCAAAGTCGG CGTCGCCGGC GGC GCGGGCGACG TCATTGGCGTGCTGC Rpic_1793 1888579 - 1888250 - | nitrogen regulatory protein P-II Rpic_1794 1889244 - 1888639 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit Rpic_1795 1889962 - 1889303 - | Isoprenylcysteine carboxyl methyltransferase Rpic_1796 1890306 - 1890034 - | glutaredoxin 2 Rpic_1797 1891008 - 1890316 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rpic_1798 1891928 - 1891005 - | cytochrome c biogenesis protein transmembrane region Rpic_1799 1892287 - 1891988 - | hypothetical protein Rpic_1800 1892533 - 1892288 - | hypothetical protein TERM 1508 1892482 - 1892511 + g 74 -12.9 -3.18389 | gap 1, overlap 1892480 1892500 AGGCGATCGCCAGGA TTGCCACCA-GGGC AAT GCCCATGGTGGCCA TGGTTTTCGTATTGC TERM 1509 1892500 - 1892514 + g 88 -10 -4.44284 | overlap 1892482 1892480 CCACCAGGGCAATGC CCATGG TGG CCATGG TTTTCGTATTGCATT Rpic_1801 1892890 - 1892585 - | hypothetical protein Rpic_1802 1893329 - 1893069 - | hypothetical protein Rpic_1803 1893777 - 1893391 - | hypothetical protein Rpic_1804 1896314 - 1893894 - | heavy metal translocating P-type ATPase Rpic_1805 1896755 - 1896327 - | transcriptional regulator, MerR family TERM 1510 1897260 - 1897276 + G 72 -2.9 -4.60487 | GCGCTGACCATGTCT CGCCG CAACTGC CGGTG TTTTTGCCGGTGCTG Rpic_1806 1897004 - 1897414 + | hypothetical protein Rpic_1807 1897485 - 1898786 + | cobalt-zinc-cadmium resistance outer membrane porin Rpic_1808 1898783 - 1900315 + | efflux transporter, RND family, MFP subunit Rpic_1809 1900312 - 1903482 + | heavy metal efflux pump, CzcA family TERM 1511 1903517 - 1903535 + G 75 -12.4 -3.53444 | AATCATGCTTGCTCT CGCTGCTG CAC CGGCAGCG TTTGCGGCCCAATCC Rpic_1810 1903479 - 1903817 + | conserved hypothetical periplasmic protein Rpic_1811 1904173 - 1904553 + | hypothetical protein TERM 1512 1904582 - 1904566 - f 71 -7.9 -4.08216 | opp_overlap 1904566 TGACTGCCCCGAAAA GCGGCAA CTC CCGCCGC TTTCAGTAACACCGG Rpic_1812 1904670 - 1905179 + | hypothetical protein TERM 1513 1905335 - 1905357 + G 71 -13.4 -3.01924 | opp_overlap 1905318 1905334 1905333, overlap 1905353 ATGAATAAGATAATC CTCGCCAGCG TGG CGCTGGCGAC TCTTGGCACGGCCTC Rpic_1813 1905311 - 1905580 + | hypothetical protein TERM 1514 1905638 - 1905606 - T 100 -27.1 -3.27298 | overlap 1905609 TCTTCTAATCAGCAA GAAGGCCGGGAGCGC CAC GCGCCCCCGGCCTTC AAGCGCTCCCACGGG TERM 1515 1905635 - 1905609 - T 100 -23 -3.77722 | overlap 1905606 TCTAATCAGCAAGAA GGCCGGGAGCGC CAC GCGCCCCCGGCC TTCAAGCGCTCCCAC Rpic_1814 1907242 - 1906166 - | lipoprotein signal peptidase TERM 1516 1906335 - 1906308 - G 70 -4.8 -4.45083 | gap 1, overlap 1906309 1906315 1906316 TGCAGATCCAGAAAA TCCACAACCTGGC CGC GCCAGA-TGCGGT CTGCGAGATTGCCTG Rpic_1815 1909641 - 1907239 - | heavy metal translocating P-type ATPase Rpic_1816 1909727 - 1910161 + | transcriptional regulator, MerR family TERM 1517 1911775 - 1911754 - g 76 -5.7 -4.4767 | opp_overlap 1911754 GGATGCACCAGAAAA GCCTGGCTG GTCG CTGGCAGGC TTACGTGAAGCAGAA Rpic_1817 1910322 - 1912244 + | iron permease FTR1 Rpic_1818 1912715 - 1912269 - | GCN5-related N-acetyltransferase TERM 1518 1912621 - 1912603 - G 78 -8.1 -4.37502 | opp_overlap 1912611 ACGACCAGATGAAAA CGGCTGG CTTGC CCAACCG CAATATCTTCGCTTG Rpic_1819 1913428 - 1912724 - | major intrinsic protein Rpic_1820 1913928 - 1913434 - | protein tyrosine phosphatase Rpic_1821 1914435 - 1913941 - | protein tyrosine phosphatase Rpic_1822 1914928 - 1914446 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_1824 1915363 - 1915175 - | hypothetical protein Rpic_1825 1917333 - 1915633 - | integrase family protein Rpic_1826 1918719 - 1917862 - | Integrase catalytic region Rpic_1827 1919102 - 1918773 - | transposase IS3/IS911 family protein TERM 1519 1918830 - 1918816 - G 82 -4.2 -5.00616 | GCCTGCGCGAAAAAA GCGC TGGCAGT GCGC AGGATGTCGTTGGCG Rpic_1828 1920369 - 1919452 - | hypothetical protein Rpic_1829 1920559 - 1920801 + | hypothetical protein Rpic_1830 1920788 - 1921027 + | hypothetical protein Rpic_1831 1921558 - 1921899 + | cointegrate resolution protein T TERM 1520 1921988 - 1921959 - T 90 -14.5 -3.66095 | overlap 1921985 AAAGTTCGACGCAAA CGGCATATTCACT GCGC AGTAAATATGCCG CCGGCTCCAGCCGGG Rpic_1832 1922908 - 1922501 - | hypothetical protein TERM 1521 1922739 - 1922754 + g 79 -2.5 -4.98255 | TCCAAAGGTGCCAGG TCGGT TGGTGT GCCGA TTTTTATGATTACAC Rpic_1833 1923302 - 1923781 + | blue (type 1) copper domain protein Rpic_1834 1924319 - 1923930 - | hypothetical protein TERM 1522 1923990 - 1923968 - G 82 -4 -5.06414 | overlap 1923971 1923972 TCCGCTCAATAAAAA TCACGATGCC CTT GGCCTCAGGA ATATCAGGAAAGATT TERM 1523 1925633 - 1925619 - g 75 -2.8 -4.80959 | CAAGCGACAAGAAAA CACC TATTCCT GGTG GCCCCAGATTCCAGA Rpic_1835 1924488 - 1925810 + | hypothetical protein TERM 1524 1925948 - 1925969 + T 85 -9.3 -4.62904 | opp_overlap 1925948 1925947 1925945 GGCAGCCACAAATAG CGGCACGCG CATT TGCGAGCCG TTTTTCGCCATGTTT Rpic_1836 1926693 - 1926205 - | protein of unknown function DUF411 Rpic_1837 1927655 - 1926726 - | copper resistance D domain protein TERM 1525 1927144 - 1927134 - G 72 -6.8 -4.2772 | CGCAAGCAACACAAA CGCT GTC AGCG ATCCAACCCATGCGC TERM 1526 1927303 - 1927291 - G 72 -3.3 -4.60746 | GCAAAAATACTAAAA GGCAG AGT CTGTC GCCTACGCACACACA Rpic_1838 1928046 - 1927660 - | copper resistance protein CopC Rpic_1839 1929370 - 1928081 - | copper resistance B precursor Rpic_1840 1931204 - 1929390 - | copper-resistance protein, CopA family TERM 1527 1931451 - 1931463 + G 72 -6.9 -4.31835 | TTTGCAGCAGGGGTT GTCGG AAG CCGGC TTTGTTGTGGACCTT Rpic_1841 1931392 - 1932078 + | two component heavy metal response transcriptional regulator, winged helix family Rpic_1842 1932078 - 1933448 + | heavy metal sensor signal transduction histidine kinase TERM 1528 1933603 - 1933615 + F 81 -4.7 -4.91873 | overlap 1933598 GCTTCCCCGTCAGGG GCCAG GCC CAGGC TTTTTCCTTGCTGTA Rpic_1843 1933677 - 1934003 + | protein of unknown function DUF326 Rpic_1844 1934135 - 1934368 + | hypothetical protein TERM 1529 1934412 - 1934437 + T 81 -13.9 -3.34398 | overlap 1934408 1934410 1934413 TTCCGGGCTTCCCCC TCCCCGGGGGG TTAC TCCCCCGGGGC TCTTTCCCGCGCGCC TERM 1530 1934413 - 1934436 + T 83 -17.4 -2.60496 | overlap 1934408 1934412 1934410 TCCGGGCTTCCCCCT CCCCGGGGGG TTAC TCCCCCGGGG CTCTTTCCCGCGCGC Rpic_1845 1934990 - 1934499 - | putative transmembrane protein Rpic_1846 1935835 - 1934987 - | ApbE family lipoprotein TERM 1531 1935364 - 1935337 - G 75 -12.6 -3.53012 | CCCCTCCGGCCGAAA CGGCGCCACTGC GAAC GTTGTGGCGCCG CAGACTTAGGATAGC TERM 1532 1935498 - 1935522 + g 76 -5.5 -4.52589 | opp_overlap 1935479, overlap 1935499 ACGTCGACTTCCGCC GTCGGCCCCGC TGG GCGGGGCAAAA TTTTGTGTGCCACCA Rpic_1847 1936353 - 1935832 - | FMN-binding domain protein TERM 1533 1936047 - 1936085 + g 86 -3.6 -5.2189 | overlap 1936048 GGATATCGACGGCGC GCACGGCTCCCTTGGCGT CGA GCGCCACGGCATACGTGA TTTTTTCATGCTTGC Rpic_1848 1937289 - 1936381 - | conserved hypothetical secreted protein Rpic_1849 1939661 - 1937373 - | heavy metal translocating P-type ATPase TERM 1534 1939601 - 1939615 + g 86 -12.8 -3.85698 | GCTCATTGTGGTCGT GCGCCG TAT CGGCGC TTTGTCGCGGGGAGG TERM 1535 1939698 - 1939685 - H 75 -2.3 -5.00616 | opp_overlap 1939685 TCCTGTTGGAAAAAA CTGGC ACGT GGCAG TGTCGTGGTCAGCAT TERM 1536 1940527 - 1940547 + G 79 -6.2 -4.70879 | TGAAAACGTCTTCCT TCACTTGA AGCAG TCGAGTGA TTTTTACAATTTCCA Rpic_1850 1939838 - 1941817 + | copper-resistance protein, CopA family Rpic_1851 1944951 - 1941922 - | transposase Tn3 family protein Rpic_1852 1945541 - 1944948 - | Resolvase domain TERM 1537 1945108 - 1945133 + g 72 -11.1 -3.53012 | overlap 1945109 TCGCCGGTGATCGCC TGCGGCCGG CCGCCGAT CCGGCCGCG TTTGCGGGCGGCAGC Rpic_1853 1945780 - 1946058 + | hypothetical protein Rpic_1854 1946055 - 1946339 + | addiction module toxin, RelE/StbE family Rpic_1855 1946746 - 1947306 + | hypothetical protein TERM 1538 1947363 - 1947319 - f 82 -15 -3.14881 | gap 2, opp_overlap 1947321 1947332, overlap 1947321 TAACCCGCCGATGAA CACGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG-G TTATCGGCAACGTAG TERM 1539 1947362 - 1947321 - f 90 -18.7 -3.13522 | gap 1, opp_overlap 1947321 1947332, overlap 1947319 ACCCGCCGATGAACA CGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG GTTATCGGCAACGTA TERM 1540 1947321 - 1947362 + F 78 -16.5 -2.57344 | gap 1, opp_overlap 1947321 1947319, overlap 1947332 ACCCGCCGATGAACA CGGACCCCCAACAGCGGCGC GTT GCGCCGCCGTTTCGGG-CCG GTTATCGGCAACGTA TERM 1541 1947332 - 1947352 + F 86 -13.9 -3.54638 | opp_overlap 1947321 1947319, overlap 1947321 AACACGGACCCCCAA CAGCGGCGC GTT GCGCCGCCG TTTCGGGCCGGTTAT Rpic_1856 1947440 - 1947796 + | Cupin 2 conserved barrel domain protein Rpic_1857 1952031 - 1948063 - | outer membrane autotransporter barrel domain protein TERM 1542 1951611 - 1951651 + g 72 -13.2 -3.14344 | gap 1 CATCGCCAGCGAGCA CGACTGCGGG-AGCGCCGC CCGG GCCGCCCTGCCCGCTGTCG TTCGTGGCACCGGTG TERM 1543 1952096 - 1952108 + r 100 -4.7 -5.84432 | AGGCTGGACCGTGGC GCGAG TGA CCCGC TTTTTTTGTCTTGTC TERM 1544 1952269 - 1952304 + r 71 -6 -4.30576 | opp_overlap 1952276, overlap 1952276 CCCAACGGAGGGCGA AAAAAAACGCGCCGAG TCGC CCCGGCGCGTTCTTCA TTTTGCTGCTGAGCG TERM 1545 1952297 - 1952276 - R 100 -15.1 -5.76949 | opp_overlap 1952269 1952276 GAGGGCGAAAAAAAA CGCGCCGAG TCGC CCCGGCGCG TTCTTCATTTTGCTG TERM 1546 1952276 - 1952297 + r 86 -12.9 -3.98107 | opp_overlap 1952276, overlap 1952269 GAGGGCGAAAAAAAA CGCGCCGAG TCGC CCCGGCGCG TTCTTCATTTTGCTG Rpic_1858 1956432 - 1952326 - | phosphoribosylformylglycinamidine synthase TERM 1547 1956244 - 1956209 - G 84 -8.9 -4.4891 | gap 1 GGGATGACCACAAAA CGG-TCGCCCTCGACA TCGGC CGGCGCGGGCGAACCG TAGGTCAGCAGCGCT Rpic_1859 1957149 - 1956580 - | putative transcriptional regulator TERM 1548 1957621 - 1957664 + G 72 -11.6 -3.5032 | gap 1, overlap 1957619 TGAACCTCTGCACAC GGCCGTT-TCGGTGCCGGCGG CTG CCTCCGTCATCGTCGACGGCC TCTTTGGTATCGGAC Rpic_1860 1957235 - 1958830 + | carbohydrate kinase, YjeF related protein Rpic_1861 1958902 - 1960521 + | Glucose-6-phosphate isomerase Rpic_1862 1961241 - 1960531 - | ABC transporter related Rpic_1863 1961306 - 1961923 + | Lysophospholipase TERM 1549 1962035 - 1962077 + G 80 -4.8 -4.74103 | gap 1 GCAAGCGGGCTGCGC GCAGCG-CGTGACAACAAG CGGTTC CTGGTCGGCATGTCGCTGC TTTTTGCCTTCCGCG Rpic_1864 1962008 - 1962700 + | signal peptidase I TERM 1550 1962763 - 1962718 - T 78 -13.4 -3.26237 | opp_overlap 1962730, overlap 1962730 CAACGCCAAAAAGTA CGCAAAGAAAAAGCCCCCTC GTTATT GAGGGGGCTTTTTCGTCAGG CTACGTGCTCTGCAC TERM 1551 1962730 - 1962751 + T 100 -13.7 -4.72986 | opp_overlap 1962730 1962718 GTACGCAAAGAAAAA GCCCCCTCG TTAT TGAGGGGGC TTTTTCGTCAGGCTA TERM 1552 1962751 - 1962730 - T 100 -13 -5.30616 | opp_overlap 1962730, overlap 1962718 GTACGCAAAGAAAAA GCCCCCTC GTTATT GAGGGGGC TTTTTCGTCAGGCTA Rpic_1865 1964725 - 1962785 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1553 1964875 - 1964845 - R 95 -14.1 -4.07687 | opp_overlap 1964851, overlap 1964847 1964851 ATTCGCCGCTGAAAA GACAAAGGCCCGA ACGAA TCGGGCCTTTGTA CAGAAATCTGGCGGA TERM 1554 1964873 - 1964847 - R 100 -16.7 -3.63744 | opp_overlap 1964851, overlap 1964845 1964851 TCGCCGCTGAAAAGA CAAAGGCCCGA ACGAA TCGGGCCTTTG TACAGAAATCTGGCG TERM 1555 1964869 - 1964851 - R 95 -11.7 -4.45168 | opp_overlap 1964851, overlap 1964847 1964845 CGCTGAAAAGACAAA GGCCCGA ACGAA TCGGGCC TTTGTACAGAAATCT TERM 1556 1964851 - 1964869 + r 82 -11.7 -3.86524 | opp_overlap 1964847 1964845 1964851 CGCTGAAAAGACAAA GGCCCGA ACGAA TCGGGCC TTTGTACAGAAATCT TERM 1557 1965094 - 1965120 + r 72 -13.6 -2.57132 | overlap 1965093 CCGTTCGTACTGCCG GCGTGAGCCGGA CTG TCCGGCGCCCGC GTTGTCACCCACGAG Rpic_1866 1965420 - 1965148 - | histone family protein DNA-binding protein TERM 1558 1965557 - 1965525 - R 100 -18.6 -3.61178 | opp_overlap 1965531, overlap 1965531 CGCAGCCAGCGCAAA GAAAAAGGGCCCGA ACATG TCGGGCCCTTCTTC AACCTCGGCAGGCTA TERM 1559 1965531 - 1965551 + r 88 -14 -3.63515 | opp_overlap 1965525 1965531 CAGCGCAAAGAAAAA GGGCCCGA ACATG TCGGGCCC TTCTTCAACCTCGGC TERM 1560 1965551 - 1965531 - R 100 -14 -5.28942 | opp_overlap 1965531, overlap 1965525 CAGCGCAAAGAAAAA GGGCCCGA ACATG TCGGGCCC TTCTTCAACCTCGGC Rpic_1867 1967992 - 1965578 - | ATP-dependent protease La TERM 1561 1968116 - 1968097 - R 100 -11.4 -5.26875 | opp_overlap 1968097 TCCCGAAGCAAAAAA GCCGCTCG CGAG CGAACGGC TTCCTGCAGGGGATG Rpic_1868 1969436 - 1968162 - | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 1562 1969532 - 1969516 - R 100 -9.4 -4.8622 | opp_overlap 1969516 TGTTCGAAGCAAAAA CGAGGC GCGAG GCCTCG TTTTTGACACCGCTT TERM 1563 1969516 - 1969532 + r 84 -9.4 -4.57341 | opp_overlap 1969516 TGTTCGAAGCAAAAA CGAGGC GCGAG GCCTCG TTTTTGACACCGCTT Rpic_1869 1970281 - 1969634 - | ATP-dependent Clp protease, proteolytic subunit ClpP Rpic_1870 1971666 - 1970323 - | trigger factor Rpic_1871 1973930 - 1971912 - | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC TERM 1564 1973240 - 1973259 + g 70 -11.4 -3.33696 | opp_overlap 1973239 1973238, overlap 1973255 1973256 AATGGGTCGGAAATT GCGCGACG GTCA TGTCGCGC TTGGTTCCGAAACCG TERM 1565 1973452 - 1973431 - G 75 -2.8 -4.82901 | overlap 1973445 TTGGCGGGAGAAAAA CCGTCGAG ATAGAA CGCGTCGG CAGCGCACGACAGTT TERM 1566 1973523 - 1973499 - G 79 -5.5 -4.68593 | CGCATCACCGAAAAA CAGCATCAGCG TAA CGCGGCCGCCG TCGAACGCCAGTCGA Rpic_1872 1974419 - 1974225 - | hypothetical protein Rpic_1873 1975062 - 1974637 - | GCN5-related N-acetyltransferase Rpic_1874 1975498 - 1975070 - | cytochrome o ubiquinol oxidase subunit IV Rpic_1875 1976160 - 1975495 - | cytochrome o ubiquinol oxidase, subunit III Rpic_1876 1978156 - 1976153 - | cytochrome o ubiquinol oxidase, subunit I Rpic_1877 1979312 - 1978260 - | ubiquinol oxidase, subunit II TERM 1567 1979580 - 1979593 + G 86 -3.1 -5.21709 | GTGATCGGGCGCGCG TCGGA GTAC TTCGA TTTTTTCGTCTACGG TERM 1568 1980394 - 1980413 + G 71 -9.2 -3.72576 | overlap 1980385 TGGGTACGCTGGTTT CCGGCCTG ATTG CAGACCGG TTTGGTCGACGCACC Rpic_1878 1979469 - 1980788 + | major facilitator superfamily MFS_1 TERM 1569 1980841 - 1980852 + F 76 -7.2 -4.56597 | CTAGGAACCCGCAGT GCGC AAGA GCGC TTTTTCAAAGGAGCA Rpic_1879 1980872 - 1981060 + | CsbD family protein TERM 1570 1981115 - 1981134 + T 100 -15 -5.41143 | opp_overlap 1981113 1981112 CATGGCCTAGAAGGG GGGCGACC GGGC GGTCGCCC TTTTTTTCGCCCATA Rpic_1880 1981414 - 1981199 - | hypothetical protein Rpic_1881 1982653 - 1981901 - | Asp/Glu/hydantoin racemase Rpic_1882 1983999 - 1982680 - | major facilitator superfamily MFS_1 TERM 1571 1983730 - 1983702 - G 74 -13.2 -3.22777 | opp_overlap 1983722, overlap 1983700 TGCCATAGATGAACA CGGACGCGAGAA TGGTC TTCTTGCGTCCG ATCCGGTCCGCGATA TERM 1572 1984157 - 1984175 + H 73 -13.2 -2.70932 | TCATTCGCGAGCTCA CCATCGCA GAT TGCGATGG TGCTTCAGCAGCCAG Rpic_1883 1984213 - 1985142 + | transcriptional regulator, LysR family Rpic_1884 1985172 - 1985513 + | hypothetical protein Rpic_1885 1986088 - 1985621 - | putative transmembrane protein TERM 1573 1986056 - 1986045 - G 72 -7.2 -4.20696 | overlap 1986037 GGACTAAGGCGAAAA GCGC TTTC GCGC AGATGGAGGGAGAAG Rpic_1886 1986885 - 1986106 - | ApbE family lipoprotein Rpic_1887 1987445 - 1986885 - | FMN-binding domain protein Rpic_1888 1988857 - 1987481 - | phosphate-selective porin O and P Rpic_1889 1990301 - 1988895 - | Di-haem cytochrome c peroxidase Rpic_1890 1990713 - 1990555 - | hypothetical protein TERM 1574 1990831 - 1990852 + r 77 -11.5 -3.64703 | opp_overlap 1990833, overlap 1990833 GGCGTGGAAATGAAA AAGCCCGCC GGGT GGCGGGCTG TTTGGATGCGGCCGC TERM 1575 1990833 - 1990850 + r 81 -14.1 -3.40597 | opp_overlap 1990833, overlap 1990831 CGTGGAAATGAAAAA GCCCGCC GGGT GGCGGGC TGTTTGGATGCGGCC TERM 1576 1990850 - 1990833 - R 100 -14.1 -4.98531 | opp_overlap 1990831 1990833 CGTGGAAATGAAAAA GCCCGCC GGGT GGCGGGC TGTTTGGATGCGGCC Rpic_1892 1994579 - 1991460 - | acriflavin resistance protein TERM 1577 1991955 - 1991936 - G 73 -5.7 -4.35461 | overlap 1991895 TGAAGATGATGAAAA TGCACAG CGGCAT CTGCGCA GCGATGGACGCACCC Rpic_1893 1995830 - 1994622 - | efflux transporter, RND family, MFP subunit Rpic_1894 1996016 - 1996849 + | squalene synthase HpnD Rpic_1895 1998034 - 1996850 - | protein of unknown function DUF1501 Rpic_1896 1999685 - 1998060 - | Protein of unknown function DUF1800 Rpic_1897 2000202 - 1999756 - | putative transmembrane protein Rpic_1898 2000393 - 2001115 + | two component transcriptional regulator, winged helix family Rpic_1899 2001149 - 2002510 + | integral membrane sensor signal transduction histidine kinase Rpic_1900 2002794 - 2003342 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1578 2003371 - 2003388 + F 100 -9.8 -4.85782 | CCCTCCGAAGCCGAA GCCCGC CCCTGC GCGGGC TTTCTTTTTCAGCCG Rpic_1901 2003423 - 2003944 + | Carboxymuconolactone decarboxylase TERM 1579 2003968 - 2003998 + T 76 -13.3 -3.06302 | gap 1, opp_overlap 2003969 GTTCAGCAAACGAAA ACGGCAGC-CCGGA TCGC TCCGGTGCTGCCGC TTGCCTCCGCGTGAT TERM 1580 2003997 - 2003969 - T 100 -16.8 -4.58773 | gap 1, opp_overlap 2003968 TTCAGCAAACGAAAA CGGCAGC-CCGGA TCGC TCCGGTGCTGCCG CTTGCCTCCGCGTGA Rpic_1902 2004532 - 2004026 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Rpic_1903 2005287 - 2004529 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 1581 2005382 - 2005421 + H 100 -21.4 -4.20368 | overlap 2005383 TAATAGCGCTCTGCG TCGCGACACCCCGCCTGC ACAT GCCGGCGGGGTGTCGTGC TTTGTCTTGCAGTCG TERM 1582 2005383 - 2005420 + H 100 -24.9 -3.11738 | overlap 2005382 AATAGCGCTCTGCGT CGCGACACCCCGCCTGC ACAT GCCGGCGGGGTGTCGTG CTTTGTCTTGCAGTC TERM 1583 2007552 - 2007537 - g 78 -4 -4.79953 | gap 1 AGAACAAGAAAGAAA TCGA-CG CCG CGATCGA AGCCATCAACGCCGG Rpic_1904 2005460 - 2008891 + | transcription-repair coupling factor TERM 1584 2010060 - 2010038 - g 78 -14.2 -3.25539 | overlap 2010036 CAAGGCCAACGAATA CGTCGAACTG GCC CAGCTCGACG CCTGCGACCGCTTCC Rpic_1905 2008929 - 2010122 + | acetylornithine deacetylase (ArgE) TERM 1585 2010729 - 2010699 - g 71 -7.5 -4.07568 | opp_overlap 2010689 CCTGGGCGCCGAAAA GATGCTCAAGGCC GTGCA GGCGCTGGGCATC CGTACGCTGCTGGTG Rpic_1906 2010160 - 2011092 + | phosphoserine phosphatase SerB TERM 1586 2011147 - 2011129 - g 100 -14.6 -4.36914 | CCTGCCCGCAGAAAA CTCGCACC GGT GGTGCGAG AAACGGTAGATGCGC TERM 1587 2011453 - 2011435 - g 100 -14.6 -4.67982 | CGCGACGCAACAAAA CTCGCACC TCT GGTGCGAG AAATCGGGTGGAGCC TERM 1588 2012041 - 2012013 - g 79 -4.5 -4.86731 | CCTGTGCAAAGAAAA GAAGCGCACCATC GTC GAATATGCACTTC GCGACGCAACGAAGC Rpic_1907 2011099 - 2012160 + | protein of unknown function DUF1016 TERM 1589 2012206 - 2012177 - T 84 -10 -4.21908 | gap 1 CACGACGATTGAAAA CGGGGCGCCACGA TCAAC TCGCA-CGCCCCG CCATCACCGCCGCCT Rpic_1908 2013446 - 2012235 - | cystathionine beta-lyase Rpic_1909 2014231 - 2013488 - | putative signal peptide protein Rpic_1910 2015390 - 2014206 - | acetyl-CoA acetyltransferase Rpic_1911 2016839 - 2015478 - | MiaB-like tRNA modifying enzyme YliG Rpic_1912 2017862 - 2016906 - | dihydrouridine synthase DuS TERM 1590 2017088 - 2017098 + g 70 -2.4 -4.63527 | GCTTGGCAGAGATGC GCGC ATG GAGC TTTTTCAAGTAGTCG TERM 1591 2017569 - 2017550 - G 71 -13.6 -2.70932 | CCGGCGTGGCAAGCA GCATGGCG CCGC CGCCATGC CGGTTCACGACCTTG TERM 1592 2018037 - 2018065 + r 76 -7.3 -4.56597 | opp_overlap 2018040, overlap 2018038 2018040 CGTGCGCCCAACAAA AAAGGCGAACCGC CAT GCGATTCGCCTCG TTTTTCCAGGCCGCC TERM 1593 2018062 - 2018040 - R 100 -15.6 -5.4505 | opp_overlap 2018038 2018037 2018040 GCGCCCAACAAAAAA GGCGAACCGC CAT GCGATTCGCC TCGTTTTTCCAGGCC TERM 1594 2018040 - 2018062 + r 78 -13.4 -3.23708 | opp_overlap 2018040, overlap 2018038 2018037 GCGCCCAACAAAAAA GGCGAACCGC CAT GCGATTCGCC TCGTTTTTCCAGGCC Rpic_1913 2018639 - 2018085 - | polyhydroxyalkonate synthesis repressor, PhaR TERM 1595 2018150 - 2018175 + g 78 -3.9 -4.82667 | overlap 2018151 TGGCCTGGCTCTGCA TCTGCTCCTGC ATCT GCACGAACAGG TTTTTGCTCTGCTCG TERM 1596 2018906 - 2018886 - R 74 -5.3 -4.56597 | overlap 2018887 CTCCCCCGGTAAAAA CCCGCAGCA TTT TGATGCGGC TCACGCACTCGGACA TERM 1597 2018979 - 2018944 - R 79 -9.7 -4.23054 | overlap 2018945 AGAGAGGACGCAAAA GGCCTGCTGCAATGC ACTCAA GCATCGCAGCATGCA GGCAAATCAGGGGAA TERM 1598 2018978 - 2018945 - R 78 -13.2 -3.13109 | overlap 2018944 GAGAGGACGCAAAAG GCCTGCTGCAATGC ACTCAA GCATCGCAGCATGC AGGCAAATCAGGGGA TERM 1599 2019042 - 2018998 - R 100 -14.9 -4.652 | overlap 2018999 AAATCAGGGGAAAAA TTGCTGCGCCTGTGCTGCAGC ATC GCCGCAGCACAGGCGTGGGAG CGTCAGCCCATGTGC TERM 1600 2019041 - 2018999 - R 95 -18.4 -3.38036 | overlap 2018998 AATCAGGGGAAAAAT TGCTGCGCCTGTGCTGCAGC ATC GCCGCAGCACAGGCGTGGGA GCGTCAGCCCATGTG Rpic_1914 2019785 - 2019045 - | acetoacetyl-CoA reductase TERM 1601 2019835 - 2019813 - R 72 -11.9 -3.28712 | overlap 2019814 TCCTTGTTGTTAGAA TCGCCCGGC CTCTT GCCGGGCGG CAAATGCTCAGGTGT TERM 1602 2019834 - 2019814 - R 78 -15.4 -2.57132 | overlap 2019813 CCTTGTTGTTAGAAT CGCCCGGC CTCTT GCCGGGCG GCAAATGCTCAGGTG Rpic_1915 2021089 - 2019908 - | acetyl-CoA acetyltransferase Rpic_1916 2022972 - 2021179 - | poly(R)-hydroxyalkanoic acid synthase, class I TERM 1603 2022334 - 2022300 - G 76 -9.1 -4.07687 | opp_overlap 2022319 2022321 2022326 2022327, overlap 2022286 AGTCGTTCTCGAAAA CGACCGCGCCTTCGC TGTTG GCGACGTTGCGGCCG ATCTCGAACGCAGTT TERM 1604 2023112 - 2023100 - H 71 -6.9 -4.22009 | ACGATCGAACAGAAA CGCCG GCC CAGCG CGGGTCTTGCGGCAT Rpic_1917 2023243 - 2023479 + | putative transmembrane protein Rpic_1918 2024293 - 2023484 - | protein of unknown function DUF152 Rpic_1919 2025389 - 2024277 - | pseudouridine synthase, RluA family Rpic_1920 2025486 - 2026262 + | outer membrane assembly lipoprotein YfiO TERM 1605 2026289 - 2026308 + T 100 -12.8 -5.38958 | opp_overlap 2026280 2026289 ACAGCACAGCAAAAA GCCCGGTC GATT GGCCGGGC TTTTTGTTTGTGCGT TERM 1606 2026308 - 2026289 - T 100 -10.6 -4.83269 | opp_overlap 2026289, overlap 2026280 ACAGCACAGCAAAAA GCCCGGTC GATT GGCCGGGC TTTTTGTTTGTGCGT Rpic_1921 2028506 - 2026329 - | helicase c2 TERM 1607 2026581 - 2026593 + g 80 -4.7 -4.82901 | opp_overlap 2026581 2026582, overlap 2026582 CTGGTGGACGGCAAA CGGGC TCA GCCCC TTTTTCTCCAGCGCC Rpic_1922 2028758 - 2028555 - | hypothetical protein Rpic_1923 2029557 - 2028793 - | hypothetical protein TERM 1608 2028884 - 2028898 + g 70 -5.6 -4.28361 | overlap 2028876 2028876 TCCTTCTGGCGCTTG GCGGCG TCT TGCTGC TTTTCCTGGAATTGC TERM 1609 2029564 - 2029599 + H 73 -10.2 -3.59979 | opp_overlap 2029583 2029584, overlap 2029565 GACGCGCATTTTATC ACCGCGCCTGTGCGGC AAAC GCCGCGCGGCCACGGA TTTCAGCTCAGGAAC TERM 1610 2029565 - 2029598 + H 73 -13.7 -2.75844 | opp_overlap 2029583 2029584, overlap 2029564 ACGCGCATTTTATCA CCGCGCCTGTGCGGC AAAC GCCGCGCGGCCACGG ATTTCAGCTCAGGAA TERM 1611 2031589 - 2031567 - g 82 -6.8 -4.66833 | overlap 2031568 TCTGAACTGGAAAAA CCCGGCCGCG ACC CGCGCCCCGA GTTCAAGACGGCGAC Rpic_1924 2029668 - 2032001 + | RNA binding S1 domain protein TERM 1612 2032023 - 2032048 + F 100 -8.9 -5.14563 | overlap 2032014 2032013 TTCTATTGAGCGGAA CCCGCCCGGTT TTCG GACTCGGCGGG TTTTTTCATGGCCGC TERM 1613 2032362 - 2032329 - g 70 -14 -2.64218 | gap 2, overlap 2032328 ATCCGCCACGACAAC CG-CGATGTCCGC-CG TGAT CGCGCGGACATCGGCG CCGACAAGGCCGCAT Rpic_1925 2032188 - 2032628 + | hypothetical protein TERM 1614 2032688 - 2032650 - T 100 -24.8 -4.15044 | opp_overlap 2032650 2032655, overlap 2032655 CCCCGCCCCAACAAA CAAAACGGCCCGTGCG TCTCTCT CGCACGGGCCGTTTTG TTATGCAGCGGAAGG TERM 1615 2032650 - 2032688 + T 100 -24.8 -3.28712 | opp_overlap 2032650 2032655, overlap 2032655 CCCCGCCCCAACAAA CAAAACGGCCCGTGCG TCTCTCT CGCACGGGCCGTTTTG TTATGCAGCGGAAGG TERM 1616 2032683 - 2032655 - T 100 -18.9 -5.09762 | opp_overlap 2032655 2032650, overlap 2032650 CCCCAACAAACAAAA CGGCCCGTGCG TCTCTCT CGCACGGGCCG TTTTGTTATGCAGCG TERM 1617 2032655 - 2032683 + T 100 -18.9 -4.77165 | opp_overlap 2032650 2032655, overlap 2032650 CCCCAACAAACAAAA CGGCCCGTGCG TCTCTCT CGCACGGGCCG TTTTGTTATGCAGCG Rpic_1926 2034609 - 2032708 - | K potassium transporter TERM 1618 2032771 - 2032783 + g 70 -6.2 -4.28548 | GTGGAAGAAGTCCGA CGGC TTGGC GCCG TTTTGATGCATCCAT TERM 1619 2034663 - 2034649 - H 88 -6.4 -5.00616 | overlap 2034651 TGGCCGCTCAAAAAA TCGTGC ATT GCACAA TGAGGGCGGATTGTA Rpic_1927 2035000 - 2035239 + | putative transmembrane protein Rpic_1928 2036353 - 2035256 - | Dihydroorotate oxidase TERM 1620 2036748 - 2036764 + H 100 -10.8 -5.45802 | opp_overlap 2036748 GAGCCGAATCATCAA GCCCGC ACACA GCGGGC TTTTTGTTTTCCGAC Rpic_1929 2036896 - 2037483 + | NUDIX hydrolase TERM 1621 2038115 - 2038149 + G 73 -9.9 -3.87373 | gap 1, opp_overlap 2038103, overlap 2038136 2038136 AAACCGAGCATCTGG CGTCGCTGGGCGGTGC CCCG GTGCCGCGC-GCGGCG TTTCTCGCACATGTG TERM 1622 2038136 - 2038189 + G 73 -11.9 -3.32963 | gap 4, overlap 2038115 2038136 TGGGCGGTGCCCCGG TG-CC-GCGCGC-GG-CGTTTCTCGCA CATG TGCGCGAAGCGGCCAGCGCGCCGGCCA TTGTGCCGTGGCACT Rpic_1930 2037508 - 2038254 + | leucyl/phenylalanyl-tRNA/protein transferase Rpic_1931 2038241 - 2039008 + | Arginyltransferase Rpic_1932 2039505 - 2039191 - | TM2 domain containing protein Rpic_1933 2039856 - 2039575 - | hypothetical protein Rpic_1934 2041262 - 2039853 - | iron-sulfur cluster binding protein TERM 1623 2041022 - 2041077 + g 72 -8.8 -4.07568 | gap 1, opp_overlap 2041019 2041022 TTTCGGCAAACAGCA CCTTGGCGCCACGGCGCGTCGCTTCCG CCT CGAAGGTGGCGAGCCA-GACGTCGAGG TTTTCCAACGCGCGG Rpic_1935 2042023 - 2041298 - | protein of unknown function DUF224 cysteine-rich region domain protein TERM 1624 2041978 - 2041967 - G 72 -7.2 -4.21194 | CTTGAGCACTGAAAA CCCG ATCT CGGG CCGCATCAGATCAAT TERM 1625 2042690 - 2042660 - g 72 -13.3 -3.05384 | gap 1, opp_overlap 2042653 2042651 CGCTCTGGCATGCAA GTGGTGCGC-GCCA TCGG TGGCCGCGCACCGC TGCATCTGACTTCGG Rpic_1936 2042264 - 2043061 + | transcriptional regulator, IclR family TERM 1626 2043080 - 2043111 + T 83 -16.1 -3.09834 | opp_overlap 2043087, overlap 2043087 GCCGGTTTTGCTCAA CAAAAAAGCGCGT CATCGA ACGCGCTTTTTTG TTGGGTGATGCGGTG TERM 1627 2043104 - 2043087 - T 100 -9.1 -5.4505 | opp_overlap 2043087 2043080 TTGCTCAACAAAAAA GCGCGTC ATCG AACGCGC TTTTTTGTTGGGTGA TERM 1628 2043087 - 2043104 + T 100 -8.4 -5.4833 | opp_overlap 2043087, overlap 2043080 TTGCTCAACAAAAAA GCGCGT CATCGA ACGCGC TTTTTTGTTGGGTGA Rpic_1937 2044319 - 2043129 - | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 TERM 1629 2043353 - 2043378 + g 74 -13.3 -3.28924 | overlap 2043344 GCATGACGAGGCAGC GGCCGGCTTCG TTGA TGAAGCCGGTC TTCTGCAGGCCGATA Rpic_1938 2045463 - 2044756 - | nitroreductase Rpic_1939 2045922 - 2045479 - | thioesterase superfamily protein Rpic_1940 2046898 - 2045981 - | protein of unknown function DUF6 transmembrane TERM 1630 2046645 - 2046624 - G 71 -9.4 -3.79251 | opp_overlap 2046638 2046642, overlap 2046625 CACTGCATCAGCAAA CCGGCCAC CGCGAT GTGGCCGA CTGTCGCCCAGTCGG Rpic_1941 2047899 - 2046895 - | histone deacetylase superfamily TERM 1631 2047887 - 2047923 + g 87 -5.7 -5.00884 | opp_overlap 2047886 2047887, overlap 2047891 ACGCAACAAAAATAG CACTCGGGCGCATCGTA ACC TACGCTGCACTCGTATG TTTTTTGAGACGGAT Rpic_1942 2048255 - 2048836 + | phasin family protein TERM 1632 2048875 - 2048896 + F 100 -17.3 -5.08255 | CTCTGATTGTTGAAG CGGGCCTCC TTCG GGAGGCCCG TTTTGTTTTGGCCGT TERM 1633 2049058 - 2049073 + F 100 -11.8 -5.38047 | CAGTGGGTACCTTTG CCCGGC TTCG GCCGGG TTTTTTGTGTGCATG Rpic_1943 2049192 - 2049737 + | putative transmembrane protein TERM 1634 2049790 - 2049759 - T 100 -21 -3.62096 | opp_overlap 2049759 2049764, overlap 2049764 GCCGATCATCCCAAA CAAAAGGGCCGCCC ATTC GAGCGGCCCTTTTG TTTGCCAGCCAGATC TERM 1635 2049759 - 2049790 + T 100 -18.8 -3.53224 | opp_overlap 2049759 2049764, overlap 2049764 GCCGATCATCCCAAA CAAAAGGGCCGCCC ATTC GAGCGGCCCTTTTG TTTGCCAGCCAGATC TERM 1636 2049764 - 2049785 + T 100 -12.9 -4.86731 | opp_overlap 2049759 2049764, overlap 2049759 TCATCCCAAACAAAA GGGCCGCCC ATTC GAGCGGCCC TTTTGTTTGCCAGCC TERM 1637 2049785 - 2049764 - T 100 -15.1 -4.88918 | opp_overlap 2049764 2049759, overlap 2049759 TCATCCCAAACAAAA GGGCCGCCC ATTC GAGCGGCCC TTTTGTTTGCCAGCC Rpic_1944 2051623 - 2049842 - | dihydrolipoamide dehydrogenase Rpic_1945 2052254 - 2051682 - | 20S proteasome A and B subunits TERM 1638 2052358 - 2052302 - R 100 -21.6 -3.54424 | gap 2 GCCGACCGCTGCAAA CCCAACCGGGC-CGGCACGCA-CAGGCC CGA AGCCAGATGCGTGCCGCGCCCGCGTGGG CTTACAGGCTGACGC Rpic_1946 2054033 - 2052360 - | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 1639 2053381 - 2053403 + g 70 -11.3 -3.31792 | gap 1 GGGCTCGGCGCAGCG GCAGCCGGTG CGGA CACCGGC-GC TTGTGCGGGTGCTGG Rpic_1947 2056876 - 2054186 - | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type TERM 1640 2059725 - 2059709 - g 75 -6.5 -4.36914 | opp_overlap 2059712, overlap 2059712 2059713 GCTCTGGGTAGAAAA CAACGCC GAT GGCATCG GCTGTACGTTTAAAA TERM 1641 2059728 - 2059712 - g 72 -6.5 -4.30995 | opp_overlap 2059712, overlap 2059709 2059713 CTGGGTAGAAAACAA CGCCGAT GGC ATCGGCT GTACGTTTAAAATCA Rpic_1948 2057190 - 2059766 + | PAS/PAC sensor signal transduction histidine kinase TERM 1642 2060260 - 2060235 - g 77 -8.2 -4.25104 | overlap 2060247 CGCCCGCGAGCAAAA GGCCGCCAAG GACCTG CTCGGCCGCC TGACCACACGCGAGC Rpic_1949 2059807 - 2060442 + | two component transcriptional regulator, LuxR family Rpic_1950 2060538 - 2061407 + | Methylenetetrahydrofolate dehydrogenase (NADP(+)) TERM 1643 2061465 - 2061440 - f 78 -4.5 -4.81249 | opp_overlap 2061440 TTGGAAACGGAAAAA GCGTCCCCACC TGTT GGATCGGACGC TTTTTTTGTCCCCCG TERM 1644 2061440 - 2061465 + F 95 -4.5 -5.60993 | opp_overlap 2061440 TTGGAAACGGAAAAA GCGTCCCCACC TGTT GGATCGGACGC TTTTTTTGTCCCCCG Rpic_1951 2061502 - 2063616 + | Oligopeptidase A TERM 1645 2063642 - 2063671 + F 100 -12.2 -4.4078 | opp_overlap 2063642 GGCCAGCCGTGACAA CGCCGCTTCG CGCCTCGTAC CGAAGCGGCG TTTTCATTCGGGCCC TERM 1646 2063671 - 2063642 - f 76 -12.2 -3.30124 | gap 1, opp_overlap 2063642 GGCCAGCCGTGACAA CGCCGCTTCGCGC CTCGT AC-CGAAGCGGCG TTTTCATTCGGGCCC Rpic_1952 2063767 - 2064576 + | exodeoxyribonuclease III Xth Rpic_1953 2064589 - 2065053 + | transcriptional regulator, MarR family Rpic_1954 2065866 - 2065060 - | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Rpic_1955 2066699 - 2065896 - | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase Rpic_1956 2067092 - 2066703 - | 5-carboxymethyl-2-hydroxymuconate isomerase Rpic_1957 2067972 - 2067103 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase Rpic_1958 2069495 - 2068014 - | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase Rpic_1959 2070262 - 2069492 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit Rpic_1960 2071011 - 2070259 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit TERM 1647 2071103 - 2071121 + r 71 -8.1 -4.07568 | gap 1, opp_overlap 2071103 CGGCGCAATGAAAAA GCCGG-CC ACGC GGACCGGC TTTTCAGGCGGCGGA TERM 1648 2071121 - 2071103 - R 100 -9.5 -4.8622 | opp_overlap 2071103 CGGCGCAATGAAAAA GCCGGCC ACGCG GACCGGC TTTTCAGGCGGCGGA Rpic_1961 2071489 - 2071199 - | hypothetical protein Rpic_1962 2073450 - 2072020 - | amino acid permease-associated region TERM 1649 2072152 - 2072134 - G 74 -2.3 -4.81551 | GACCCACACCAAAAA GGCGATC CAGGT GACGGCC TGCAGGTGGCTCATC TERM 1650 2073408 - 2073427 + g 78 -4.2 -4.72272 | overlap 2073409 TGTCGCTGTGGCCCG TGCGGATC ATGT GATCCACG TTTTTGGTACGAAAC TERM 1651 2073554 - 2073538 - R 89 -6.5 -5.1101 | GGATTATGCAAAAAA GCGAGCA TTT TACCCGC AGGCGACATTCCGCC Rpic_1963 2074713 - 2073640 - | DNA-directed DNA polymerase TERM 1652 2074866 - 2074827 - R 90 -15.2 -3.61894 | gap 1 AACGCGGCGCAACAA TGCATTTCGCCGATATTGC GAC GCAGCATCGGCG-AATGCA GGAATCGGAAAAGCG Rpic_1964 2075261 - 2074884 - | putative lipoprotein TERM 1653 2075165 - 2075112 - G 77 -11.5 -3.74693 | gap 1 CTGCACCTGATCAAA GCGCGCGCGCGGGTCCACGGGTGCAG GCG CCGCGACCG-GAACCGGCTCACGCAC CACCACCGTTCGCGT TERM 1654 2075819 - 2075849 + G 75 -11.9 -3.55444 | gap 2 TTCGTGGAGGGCGAA GTCGGCCGCTGGCGC GAT GCG-C-GCGGTCGAC TTTACACACTGCCGC Rpic_1965 2075576 - 2076514 + | Aldose 1-epimerase Rpic_1966 2076859 - 2076524 - | alkylhydroperoxidase like protein, AhpD family Rpic_1967 2076975 - 2077889 + | transcriptional regulator, AraC family Rpic_1968 2078370 - 2077915 - | transcriptional regulator, MerR family Rpic_1969 2078788 - 2078363 - | hypothetical protein TERM 1655 2079071 - 2079033 - R 100 -20.5 -4.25104 | opp_overlap 2079038, overlap 2079038 TCGCCCCGACCAAAA CAAAAGCCCGCGTAACG GATCA CGTTACGCGGGCTTTTT CGTTTCTATCTGCGC TERM 1656 2079038 - 2079066 + r 100 -20.4 -5.07011 | opp_overlap 2079038 2079033 CCGACCAAAACAAAA GCCCGCGTAACG GATCA CGTTACGCGGGC TTTTTCGTTTCTATC TERM 1657 2079066 - 2079038 - R 100 -20.4 -5.13722 | opp_overlap 2079038, overlap 2079033 CCGACCAAAACAAAA GCCCGCGTAACG GATCA CGTTACGCGGGC TTTTTCGTTTCTATC Rpic_1970 2079540 - 2079109 - | transcriptional regulator, MerR family TERM 1658 2079638 - 2079669 + r 95 -12.3 -4.1899 | opp_overlap 2079659 TGTCGACCGGCAGCG GCTCGACGCGCTC TTCAAC GAGCGCCTTGAGC TTTTGGCTCGCGTGG Rpic_1971 2080031 - 2079615 - | integration host factor, alpha subunit Rpic_1972 2082539 - 2080110 - | phenylalanyl-tRNA synthetase, beta subunit TERM 1659 2080704 - 2080675 - G 70 -6.3 -4.23213 | opp_overlap 2080676 2080678, overlap 2080676 2080679 TTCACATCGAAGAAA TCAACCGGGCGTG TCTG CACGCCCCACTGC TCTTCCTTGGACGGA TERM 1660 2081812 - 2081773 - G 70 -11.4 -3.4149 | gap 1, overlap 2081771 ACGTAATTCGAAATA TCGACCAGCGCCGACACGC TGC GCATGCCTGCGC-GCTCGA TGCGCGACACCATCC Rpic_1973 2083637 - 2082603 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 1661 2083717 - 2083697 - R 100 -14 -5.4505 | GCGCGGAATAAAAAA CGGGGCTC GGTGA GAGCCCCG TCAGGGTGATCAGCC Rpic_1974 2084135 - 2083779 - | ribosomal protein L20 Rpic_1975 2084361 - 2084164 - | ribosomal protein L35 TERM 1662 2084323 - 2084336 + g 80 -5.2 -4.78753 | opp_overlap 2084323, overlap 2084318 AGGACGGGCAGTAAA GCGC TTGGAC GCGC TTTTCTTCGTCTTCA TERM 1663 2084495 - 2084528 + r 81 -5.3 -4.86954 | gap 2, overlap 2084495 2084496 2084498 CCGTCTGGAACCTGC T-CAGC-GCAGCCGG AACCGC CCGGCCGCCGCTGCA TTATTTTTTCTTCTT Rpic_1976 2085050 - 2084529 - | translation initiation factor IF-3 TERM 1664 2084901 - 2084921 + g 70 -6.1 -4.27117 | CTGCGCGGTCGGCGC GATCTCGAC CAG GTCGACGTC TTTCTCTTCTGCCAG TERM 1665 2085090 - 2085078 - R 95 -3.3 -5.73672 | overlap 2085081 AAAGAATCAAAAAAA CAGGC CGT GCCCA GCTCATGACTTGTTG Rpic_1977 2087000 - 2085093 - | threonyl-tRNA synthetase TERM 1666 2086019 - 2086032 + g 76 -9.5 -4.19953 | AGTTCATCGGCTTCA GCGCG TATT CGCGC TTTTCCGATTCCGTG TERM 1667 2087171 - 2087186 + r 95 -11.8 -4.55798 | opp_overlap 2087171, overlap 2087166 GCGGACGAAAAAAAA CGCGGC CAAG GCCGCG TTTTCATTTGCGCTA TERM 1668 2087186 - 2087171 - R 100 -11.8 -5.86061 | opp_overlap 2087166 2087171 GCGGACGAAAAAAAA CGCGGC CAAG GCCGCG TTTTCATTTGCGCTA Rpic_1978 2089707 - 2087482 - | (p)ppGpp synthetase I, SpoT/RelA TERM 1669 2087931 - 2087953 + g 77 -11.2 -3.75024 | opp_overlap 2087898, overlap 2087922 2087947 CGCTCTTGGCGCCAC GAGCCACGCT GGT GGCGCGGCTC TTCTTGGTGATGGCC TERM 1670 2089042 - 2089054 + g 70 -6.2 -4.25104 | GCCGATGAACTTCTC GCGC TCGAT GCGC TTTTCGTCCAGCAGG Rpic_1979 2090114 - 2089746 - | Endoribonuclease L-PSP TERM 1671 2090154 - 2090142 - R 76 -9.1 -4.03413 | ATGGGGTCAGACAAA CGGTC ATT GACCG AGGAAGAACTTGCGG Rpic_1980 2091014 - 2090145 - | alpha/beta hydrolase fold TERM 1672 2091121 - 2091138 + r 82 -12.7 -3.61398 | opp_overlap 2091121 GCCAAAAACAAAAAA GCCTCGC CGCA GCGAGGC TTCTTCAGAAGCAGA TERM 1673 2091138 - 2091121 - R 100 -12.7 -5.93252 | opp_overlap 2091121 GCCAAAAACAAAAAA GCCTCGC CGCA GCGAGGC TTCTTCAGAAGCAGA Rpic_1981 2091938 - 2091159 - | 3-hydroxybutyrate dehydrogenase TERM 1674 2091763 - 2091783 + g 76 -6.1 -4.56597 | CTCATGTCGGCGCCG TGATATCCG ATG CGGATGGCA TTTTTGCCCGCGGCC Rpic_1982 2092596 - 2091961 - | 3-oxoacid CoA-transferase, B subunit Rpic_1983 2093308 - 2092607 - | 3-oxoacid CoA-transferase, A subunit TERM 1675 2092973 - 2092958 - G 77 -11.8 -3.61398 | opp_overlap 2092967 GGTCTTGGTGAAGAA CGCCGG GATG CCGGCG CCGCCAGCGCGCAGC TERM 1676 2093256 - 2093298 + g 82 -6 -4.72497 | GCGATGGTCTGGCCG TCCCTGACGACGCCCGCGAG CGC CTCGCTGGCGCTGGCGAAGA TTTTGTTCATGCGTG Rpic_1984 2093462 - 2094007 + | transcriptional regulator, LuxR family Rpic_1985 2094806 - 2094021 - | short-chain dehydrogenase/reductase SDR TERM 1677 2095985 - 2095964 - g 80 -12.3 -3.72027 | gap 1 ACGCGCCATCAACAA CGGCA-CGCC GCA GGCGCTGCCG AAAACGGTGTTCCCA Rpic_1986 2095017 - 2096702 + | Electron-transferring-flavoprotein dehydrogenase TERM 1678 2096729 - 2096745 + T 100 -12.3 -5.60689 | opp_overlap 2096729 TCGCCCAACAAAAAA GACGGCT TGA AGCCGTC TTTTTTGTTGTCTGC TERM 1679 2096745 - 2096729 - T 100 -12.3 -5.4505 | opp_overlap 2096729 TCGCCCAACAAAAAA GACGGCT TGA AGCCGTC TTTTTTGTTGTCTGC Rpic_1987 2097871 - 2096771 - | Chorismate synthase TERM 1680 2097553 - 2097581 + g 70 -11.7 -3.31157 | AGTACGTGTAATCGG CATGGCCGGGACG GAA TGTCTCGGCGATG TTGCTGTAGTCCTTG TERM 1681 2097909 - 2097887 - R 74 -12.6 -3.14344 | GATCGTGCTCAGGAA GGCGCCGCGA CGG CCGCGGCGCG AAACATCAGGAAAAC Rpic_1988 2098370 - 2097957 - | Peptidylprolyl isomerase Rpic_1989 2100373 - 2098466 - | phospholipid/glycerol acyltransferase TERM 1682 2098641 - 2098625 - G 82 -5.7 -4.82901 | CTTGCGCGAGAAAAA GCTGCCC CAG AGGCCGC GCAGCGCCATCGGTA TERM 1683 2098949 - 2098911 - G 74 -5.1 -4.4767 | gap 1, overlap 2098912 2098915 TGATCCATCACAAAA CGCACGGGGCGGCGCACG AACG CGCCCACCACCACG-GCA TCGACGAAGCTCACG TERM 1684 2099625 - 2099609 - G 72 -8.7 -3.96216 | overlap 2099621 CGCGTAGGCAAAGAA CGACGTC AGG AACGTCG CGCCCACGAACCAGA TERM 1685 2100424 - 2100403 - R 100 -12.9 -5.4505 | opp_overlap 2100403 GGGTTCAACAAAAAA CCCGCTCGC AACG GCGGGCGGG TTTCAGGGATGCGGT TERM 1686 2100403 - 2100424 + r 90 -15.1 -3.55563 | opp_overlap 2100403 GGGTTCAACAAAAAA CCCGCTCGC AACG GCGGGCGGG TTTCAGGGATGCGGT Rpic_1990 2100911 - 2100456 - | CBS domain containing protein TERM 1687 2101073 - 2101038 - H 84 -3.8 -5.26316 | opp_overlap 2101052 GCAGCGCAGAAAAAA CCTGTCAAAAACCGCG CCCG CTCGGCGTTTGCCCGG AATGCGCTGCAACAG Rpic_1991 2101103 - 2102485 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1688 2103198 - 2103166 - g 72 -6.9 -4.2717 | gap 1, opp_overlap 2103194 2103194, overlap 2103152 ATGACGCCAGCAAAA GCCGGCC-GTCAGG TTGCGG CAGGACTGGCCGGC AGCCGCGTTGTGGGG Rpic_1992 2102485 - 2103309 + | alpha/beta hydrolase fold Rpic_1993 2103331 - 2103648 + | putative transmembrane protein Rpic_1994 2104984 - 2103653 - | ribonuclease BN Rpic_1995 2105053 - 2105646 + | flavoprotein WrbA Rpic_1996 2105643 - 2106035 + | putative transmembrane protein TERM 1689 2106733 - 2106752 + G 70 -7.8 -4.0641 | gap 1 TGGCGGCCCTGCAAT CGCC-GCGT CAG GCGCTGGCG TTTCTATCGCTGGCG Rpic_1997 2106042 - 2107454 + | FAD linked oxidase domain protein Rpic_1998 2107675 - 2107472 - | hypothetical protein TERM 1690 2107841 - 2107810 - H 71 -6.5 -4.27316 | gap 1, opp_overlap 2107830 GGTCGGAACCGAAAA GGCTTCGTCACGCC CGTTT GGCGTG-CGTAGGC ACGATGTTCCGCGTC TERM 1691 2107848 - 2107867 + H 73 -10 -3.60098 | TGCGTAGGCACGATG TTCCGCGT CATT GCGCGGAA TTTCGAATGGAACGT TERM 1692 2107944 - 2107927 - H 91 -8.3 -4.78764 | opp_overlap 2107926, overlap 2107928 GAAATGTATCAAAAA TCCCCCC AATT GGGGGGT ACGTATTTTAGGTAT TERM 1693 2107943 - 2107928 - H 74 -11.8 -3.46174 | opp_overlap 2107926, overlap 2107927 AAATGTATCAAAAAT CCCCCC AATT GGGGGG TACGTATTTTAGGTA Rpic_1999 2108046 - 2108243 + | hypothetical protein TERM 1694 2108270 - 2108302 + T 100 -8.9 -4.81551 | opp_overlap 2108271 2108272, overlap 2108271 2108272 ATCCCATCTGTTAGA ATCGCGGCCTCCCAG GCA CCCGGAGGCCGCGCG TTTTTGGTATGCCTG TERM 1695 2108301 - 2108271 - T 86 -14.6 -3.30124 | opp_overlap 2108271 2108270 2108272, overlap 2108272 TCCCATCTGTTAGAA TCGCGGCCTCCCAG GCA CCCGGAGGCCGCGC GTTTTTGGTATGCCT TERM 1696 2108271 - 2108301 + T 79 -12.4 -3.48208 | opp_overlap 2108271 2108272, overlap 2108270 2108272 TCCCATCTGTTAGAA TCGCGGCCTCCCAG GCA CCCGGAGGCCGCGC GTTTTTGGTATGCCT TERM 1697 2108272 - 2108300 + T 78 -15.9 -2.68202 | opp_overlap 2108271 2108272, overlap 2108271 2108270 CCCATCTGTTAGAAT CGCGGCCTCCCAG GCA CCCGGAGGCCGCG CGTTTTTGGTATGCC TERM 1698 2108300 - 2108272 - T 85 -18.1 -2.57931 | opp_overlap 2108272 2108271 2108270, overlap 2108271 CCCATCTGTTAGAAT CGCGGCCTCCCAG GCA CCCGGAGGCCGCG CGTTTTTGGTATGCC Rpic_2000 2109090 - 2108587 - | OmpA/MotB domain protein Rpic_2001 2109569 - 2109099 - | transcriptional regulator, AsnC family Rpic_2002 2109715 - 2111193 + | aminotransferase class V Rpic_2003 2111742 - 2111221 - | transcriptional regulator, AsnC family Rpic_2004 2111888 - 2112904 + | 1-aminocyclopropane-1-carboxylate deaminase TERM 1699 2113045 - 2113102 + F 78 -6.9 -4.72272 | gap 1, overlap 2113087 GTCACGAGGCATTTA GCTCGACGCGCGGAG-ATCGGAACTCGA GGG TTGAGGCTTTTTGCTCCGCGCCTCGAGC TTTTTACTCGGCGAG TERM 1700 2113108 - 2113144 + F 72 -2.1 -4.72986 | overlap 2113087 2113109 2113129 2113130 CGCCTCGAGCTTTTT ACTCGGCGAGTCGAG CTTTTTA CTCGGCGAGTCGAGC TTTTTACTCCGCGTG TERM 1701 2113129 - 2113165 + F 72 -2.1 -4.72986 | overlap 2113109 2113108 2113130 2113150 2113151 CGAGTCGAGCTTTTT ACTCGGCGAGTCGAG CTTTTTA CTCCGCGTGCCGAGC TTTTTGCTCCGCGTG TERM 1702 2113150 - 2113186 + F 85 -6.4 -4.7254 | overlap 2113130 2113129 2113151 2113171 CGAGTCGAGCTTTTT ACTCCGCGTGCCGAGC TTTTT GCTCCGCGTGCCGAGC TTTTTGCTCGGCGCT TERM 1703 2113151 - 2113185 + F 70 -9.9 -3.43042 | overlap 2113130 2113129 2113150 2113171 GAGTCGAGCTTTTTA CTCCGCGTGCCGAGC TTTTT GCTCCGCGTGCCGAG CTTTTTGCTCGGCGC TERM 1704 2113171 - 2113228 + F 100 -10.5 -4.74132 | gap 1, overlap 2113151 2113150 CGTGCCGAGCTTTTT GCTCCGCGTGCCGAGCTTT-TTGCTCGG CGC TTGAGGATCAGAGCTCGGCCCACGGGGC TTTTTGCTCGACTGT Rpic_2006 2113473 - 2113892 + | conserved hypothetical membrane associated protein Rpic_2007 2114730 - 2113897 - | aldo/keto reductase Rpic_2008 2116055 - 2114820 - | NADH:flavin oxidoreductase/NADH oxidase TERM 1705 2115227 - 2115257 + g 85 -16.8 -3.05384 | opp_overlap 2115219 2115220, overlap 2115248 GGAAATACGCTTCGC GGGCAAGCGTGCGG CCG TCGCGCGCGTGCCC TTGCATGGCAGGCAC Rpic_2009 2116144 - 2116602 + | transcriptional regulator, MerR family Rpic_2010 2116692 - 2116991 + | hypothetical protein Rpic_2011 2117650 - 2117009 - | Lysine exporter protein (LYSE/YGGA) Rpic_2012 2117725 - 2118621 + | transcriptional regulator, LysR family Rpic_2013 2119486 - 2118626 - | beta-lactamase domain protein Rpic_2014 2119588 - 2119953 + | transcriptional regulator, ArsR family TERM 1706 2120034 - 2120067 + G 74 -2.3 -4.75174 | gap 1, overlap 2120020 2120035 2120038 CTGGCGCTGACGGGC GCAGGCGGCGCCATTG TCG CGGTGCCGCTGC-TGA TTTTTGGGTTGCATC Rpic_2015 2119956 - 2120777 + | protein of unknown function DUF81 TERM 1707 2120904 - 2120940 + F 100 -16.8 -3.53091 | opp_overlap 2120905 2120910, overlap 2120905 2120910 AGCATTGAGCAGCAA ACAAAACGGCTTACGT TCACC ACGTAAGCCGTTTTGC TTTGGAGCGACACAT TERM 1708 2120939 - 2120905 - f 100 -20.3 -3.79747 | opp_overlap 2120904 2120905 2120910, overlap 2120910 GCATTGAGCAGCAAA CAAAACGGCTTACGT TCACC ACGTAAGCCGTTTTG CTTTGGAGCGACACA TERM 1709 2120905 - 2120939 + F 95 -20.3 -2.71712 | opp_overlap 2120905 2120910, overlap 2120904 2120910 GCATTGAGCAGCAAA CAAAACGGCTTACGT TCACC ACGTAAGCCGTTTTG CTTTGGAGCGACACA TERM 1710 2120910 - 2120934 + F 100 -14.4 -4.54727 | opp_overlap 2120910 2120905, overlap 2120905 2120904 GAGCAGCAAACAAAA CGGCTTACGT TCACC ACGTAAGCCG TTTTGCTTTGGAGCG TERM 1711 2120934 - 2120910 - f 100 -14.4 -4.95484 | opp_overlap 2120905 2120904 2120910, overlap 2120905 GAGCAGCAAACAAAA CGGCTTACGT TCACC ACGTAAGCCG TTTTGCTTTGGAGCG Rpic_2016 2121027 - 2121500 + | phosphohistidine phosphatase, SixA Rpic_2017 2121628 - 2122461 + | hypothetical protein TERM 1712 2122520 - 2122489 - T 93 -14.5 -3.83502 | opp_overlap 2122494, overlap 2122494 CAGCGCCACATCAAA TAAAACGGCCCGG GTCACT CCGGGCCGTTTTG CTTGGGATGCTGCGC TERM 1713 2122494 - 2122515 + T 100 -15.1 -4.42238 | opp_overlap 2122494 2122489 CCACATCAAATAAAA CGGCCCGGG TCAC TCCGGGCCG TTTTGCTTGGGATGC TERM 1714 2122515 - 2122494 - T 100 -14.4 -4.97158 | opp_overlap 2122494, overlap 2122489 CCACATCAAATAAAA CGGCCCGG GTCACT CCGGGCCG TTTTGCTTGGGATGC Rpic_2018 2124080 - 2122542 - | Ppx/GppA phosphatase Rpic_2019 2124250 - 2126421 + | Polyphosphate kinase TERM 1715 2126448 - 2126467 + T 100 -13.6 -4.7373 | opp_overlap 2126448 GCCGGCAAACAAAAA CGCACGCT CACC AGCGTGCG TTTTTCATCGGATCA TERM 1716 2126467 - 2126448 - T 100 -13.6 -5.27335 | opp_overlap 2126448 GCCGGCAAACAAAAA CGCACGCT CACC AGCGTGCG TTTTTCATCGGATCA Rpic_2020 2127832 - 2126504 - | multi-sensor signal transduction histidine kinase Rpic_2021 2128640 - 2127927 - | two component transcriptional regulator, winged helix family TERM 1717 2128265 - 2128289 + g 71 -9.2 -3.76224 | gap 1, overlap 2128256 CGTCGTCGGTCAGCT GCGGCGC-GCG GCGG CGCAGCACCGC TTTGATGCGTGCGAG Rpic_2022 2129378 - 2128665 - | phosphate uptake regulator, PhoU Rpic_2023 2130210 - 2129419 - | phosphate ABC transporter, ATPase subunit Rpic_2024 2131091 - 2130207 - | phosphate ABC transporter, inner membrane subunit PstA Rpic_2025 2132104 - 2131130 - | phosphate ABC transporter, inner membrane subunit PstC TERM 1718 2132179 - 2132142 - R 77 -11.9 -3.56366 | opp_overlap 2132170, overlap 2132143 2132145 AAGAAGCTTTTGAAA TGATGCGGGCGGCCGAT TCGT ACCGACCTCCCGCACCT AGTGCTGCATCTAGT TERM 1719 2132178 - 2132143 - R 79 -15.4 -2.73338 | opp_overlap 2132170, overlap 2132142 2132145 AGAAGCTTTTGAAAT GATGCGGGCGGCCGAT TCGT ACCGACCTCCCGCACC TAGTGCTGCATCTAG TERM 1720 2132176 - 2132145 - R 79 -14.4 -2.90992 | opp_overlap 2132170, overlap 2132143 2132142 AAGCTTTTGAAATGA TGCGGGCGGCCGAT TCGT ACCGACCTCCCGCA CCTAGTGCTGCATCT Rpic_2026 2133256 - 2132225 - | phosphate ABC transporter, periplasmic phosphate-binding protein TERM 1721 2133400 - 2133415 + r 89 -11.8 -4.15543 | opp_overlap 2133400 CCACGCATAAAAAAA GCGGCC CGGA GGCCGC TTTTCGACATGTTTG TERM 1722 2133415 - 2133400 - R 100 -11.8 -5.64274 | opp_overlap 2133400 CCACGCATAAAAAAA GCGGCC CGGA GGCCGC TTTTCGACATGTTTG Rpic_2027 2134791 - 2133448 - | phosphoglucosamine mutase Rpic_2028 2135698 - 2134901 - | dihydropteroate synthase TERM 1723 2135886 - 2135834 - R 85 -18.6 -2.59881 | gap 1, opp_overlap 2135849, overlap 2135849 CAGGCATGCCAGAAT GCGCCAACAAAAAAAGAGCCGGTGC GCTT GCACCGGCTCTTTTGC-GTCGCCGC CCGGGCGACAAACTA TERM 1724 2135872 - 2135849 - R 100 -18.2 -5.7946 | opp_overlap 2135849, overlap 2135834 GCGCCAACAAAAAAA GAGCCGGTGC GCTT GCACCGGCTC TTTTGCGTCGCCGCC TERM 1725 2135849 - 2135872 + r 100 -18.2 -4.18018 | opp_overlap 2135834 2135849 GCGCCAACAAAAAAA GAGCCGGTGC GCTT GCACCGGCTC TTTTGCGTCGCCGCC Rpic_2029 2137804 - 2135918 - | ATP-dependent metalloprotease FtsH TERM 1726 2137061 - 2137073 + g 71 -9.1 -3.73106 | opp_overlap 2137055, overlap 2137067 ATCGATGAACACGAT GCAGG GCG CCTGC TTCTTGGCGTTTTCG Rpic_2030 2138602 - 2137937 - | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 1727 2138691 - 2138704 + H 76 -9.5 -4.06419 | GCCGTTTGTCTCTTT GCGCG ATCC CGCGC TTATTTATGCCCGCC Rpic_2031 2138711 - 2139211 + | protein of unknown function UPF0044 TERM 1728 2139257 - 2139236 - T 89 -10.1 -4.52589 | opp_overlap 2139237, overlap 2139237 GGGCTGCACACAAAA CGACCGGCT TTTC AGCCGGTCT TTTTTTGGCCTTCAG TERM 1729 2139256 - 2139237 - T 81 -13.6 -3.31232 | opp_overlap 2139237, overlap 2139236 GGCTGCACACAAAAC GACCGGCT TTTC AGCCGGTC TTTTTTTGGCCTTCA TERM 1730 2139237 - 2139256 + T 100 -13.6 -5.47399 | opp_overlap 2139237 2139236 GGCTGCACACAAAAC GACCGGCT TTTC AGCCGGTC TTTTTTTGGCCTTCA Rpic_2032 2139736 - 2139269 - | putative transmembrane protein TERM 1731 2139575 - 2139559 - G 72 -6.5 -4.2828 | overlap 2139564 TGGCAGCGAGCAAAA GGAGACA CCC TGTCGCC AGGCCGATCCACGCC TERM 1732 2139631 - 2139602 - G 77 -11.4 -3.72576 | overlap 2139605 2139620 CGCCTCCGCATGAAA CAACCGGCCGGC AATCGA GCCGGCCAACTG GCGATCATCCAGCAT TERM 1733 2139628 - 2139605 - G 75 -9.5 -4.00042 | overlap 2139602 2139620 CTCCGCATGAAACAA CCGGCCGGC AATCGA GCCGGCCAA CTGGCGATCATCCAG TERM 1734 2139668 - 2139656 - G 75 -9.1 -3.94634 | CAGCATCGCAAACAA CGTCG GCG CGACG ATGTAACCGATGGTC Rpic_2033 2140233 - 2139757 - | transcription elongation factor GreA TERM 1735 2140259 - 2140317 + r 84 -10.6 -4.17048 | opp_overlap 2140261 2140262, overlap 2140262 2140288 TCAGAATCACAAAAA AATCAGCCGCTGCGAAGCGGGAGGGCGC GTA GCGCACACCCGCCTGACGGCGGCTGTCG TTGTTTTGACACGGA TERM 1736 2140315 - 2140261 - R 100 -19.8 -5.73339 | opp_overlap 2140259 2140262 2140288, overlap 2140262 AGAATCACAAAAAAA TCAGCCGCTGCGAAGCGGGAGGGCGC GTA GCGCACACCCGCCTGACGGCGGCTGT CGTTGTTTTGACACG TERM 1737 2140262 - 2140314 + r 100 -21.1 -3.10579 | opp_overlap 2140262 2140261, overlap 2140259 2140288 GAATCACAAAAAAAT CAGCCGCTGCGAAGCGGGAGGGCGC GTA GCGCACACCCGCCTGACGGCGGCTG TCGTTGTTTTGACAC TERM 1738 2140314 - 2140262 - R 100 -23.3 -4.01563 | opp_overlap 2140259 2140262 2140288, overlap 2140261 GAATCACAAAAAAAT CAGCCGCTGCGAAGCGGGAGGGCGC GTA GCGCACACCCGCCTGACGGCGGCTG TCGTTGTTTTGACAC Rpic_2034 2143678 - 2140433 - | carbamoyl-phosphate synthase, large subunit Rpic_2035 2144369 - 2143695 - | Lysine exporter protein (LYSE/YGGA) TERM 1739 2143818 - 2143777 - G 72 -8.5 -4.04474 | gap 1 ATACCGGCAGACAAA CGTCGTCGCGCG-CGGAACG CCG CGGCCAGCCGCGCGCCCACG AAGATGATGGTGGTC Rpic_2036 2145527 - 2144391 - | carbamoyl-phosphate synthase, small subunit Rpic_2037 2147774 - 2145873 - | propionate/CoA ligase TERM 1740 2147903 - 2147884 - R 100 -12.8 -5.07652 | opp_overlap 2147884 CGCCCCAAAACAAAA CGGCGCCC CGCA GGACGCCG TTTCTGTTGCCAGTC TERM 1741 2147884 - 2147903 + r 84 -10.6 -4.19624 | opp_overlap 2147884 CGCCCCAAAACAAAA CGGCGCCC CGCA GGACGCCG TTTCTGTTGCCAGTC Rpic_2038 2149469 - 2147919 - | MLTD_N domain protein Rpic_2039 2150447 - 2149608 - | hydroxyacylglutathione hydrolase TERM 1742 2151165 - 2151141 - g 71 -7.7 -4.18018 | opp_overlap 2151141 2151143 CGCCTTCATGGAAAA GGCCGGCGACC GTT GGTGGCCGATC TTCGGTGCGGTTTAC Rpic_2040 2150563 - 2151351 + | Methyltransferase type 11 Rpic_2041 2151391 - 2151837 + | ribonuclease H Rpic_2042 2152364 - 2151855 - | hypothetical protein TERM 1743 2152430 - 2152453 + r 74 -11 -3.55622 | overlap 2152424 GAACAGCTTGCGTTC GGCCTGACGA CGCT TCGTCAGCCC TTTGAGCGGCTTGCC Rpic_2043 2152858 - 2152406 - | Lysozyme Rpic_2044 2153600 - 2152848 - | hypothetical protein TERM 1744 2153729 - 2153758 + r 71 -7.8 -4.10161 | gap 2 GGAGTTGCCGGAGCC GGGGCCGGC--GCG TTAC CGCCAGCCGGCACC TTTTCGCCGATCATC Rpic_2045 2154378 - 2153710 - | hypothetical protein Rpic_2046 2154627 - 2155286 + | two component transcriptional regulator, LuxR family TERM 1745 2155426 - 2155438 + F 89 -6.9 -5.14563 | overlap 2155417 TTGCAAGGCGGCGCA CGGTG CAT CGCCG TTTTTTCATGGAGGC Rpic_2047 2155459 - 2155737 + | hypothetical protein TERM 1746 2155807 - 2155791 - T 84 -9.4 -4.51812 | opp_overlap 2155791 2155790 GTGGATAAGAAGAAA GCCAGC GCGAG GCTGGC CTTGTGGAAACGGAC Rpic_2048 2157336 - 2155828 - | SpoVR family protein TERM 1747 2156547 - 2156567 + g 75 -9.7 -4.0616 | opp_overlap 2156539 AGAAGTACTGCGCGA TCTTGCGCA CGA TGCGCACGA TTTCTCGTTGCCATG Rpic_2049 2158716 - 2157454 - | protein of unknown function DUF444 Rpic_2050 2160694 - 2158772 - | putative serine protein kinase, PrkA Rpic_2051 2162465 - 2161563 - | transcriptional regulator, LysR family TERM 1748 2165744 - 2165759 + G 84 -8.2 -4.56597 | overlap 2165743 AAACCAGGTTGGATC GCGCGG CTGC TCGCGC TTTTTGGAGCCCGGC Rpic_2052 2162744 - 2165779 + | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding Rpic_2053 2165776 - 2166591 + | Carbon-monoxide dehydrogenase (acceptor) TERM 1749 2166620 - 2166602 - g 77 -11 -3.72743 | opp_overlap 2166610, overlap 2166606 GATGAGTAAAACCAA GAAAGGCG GCG CGCCTTCC AGTGCGCTTTCTGTG TERM 1750 2166616 - 2166606 - g 84 -8.2 -4.46669 | opp_overlap 2166610, overlap 2166602 AGTAAAACCAAGAAA GGCG GCG CGCC TTCCAGTGCGCTTTC Rpic_2054 2166588 - 2167163 + | (2Fe-2S)-binding domain protein Rpic_2055 2167156 - 2168574 + | AMP-dependent synthetase and ligase Rpic_2056 2168571 - 2168723 + | hypothetical protein Rpic_2057 2168720 - 2168977 + | hypothetical protein TERM 1751 2169023 - 2168995 - f 93 -17.5 -3.36505 | opp_overlap 2168996 2168999 2169002 2169010, overlap 2168996 2168999 2169002 ACACTGCATCGAGAA TGAAGAAGCCCGC ATT GCGGGCTTCTTCT TTGGGTGTCCGCATT TERM 1752 2169022 - 2168996 - f 100 -21 -2.61582 | opp_overlap 2168996 2168999 2169002 2169010, overlap 2168995 2168999 2169002 CACTGCATCGAGAAT GAAGAAGCCCGC ATT GCGGGCTTCTTC TTTGGGTGTCCGCAT TERM 1753 2168996 - 2169022 + F 100 -21 -3.7108 | opp_overlap 2168995 2168996 2168999 2169002, overlap 2168999 2169002 2169010 CACTGCATCGAGAAT GAAGAAGCCCGC ATT GCGGGCTTCTTC TTTGGGTGTCCGCAT TERM 1754 2168999 - 2169019 + F 100 -16.9 -3.98913 | opp_overlap 2168999 2168996 2168995 2169002, overlap 2168996 2169002 2169010 TGCATCGAGAATGAA GAAGCCCGC ATT GCGGGCTTC TTCTTTGGGTGTCCG TERM 1755 2169019 - 2168999 - f 100 -16.9 -3.45945 | opp_overlap 2168996 2168999 2169002 2169010, overlap 2168996 2168995 2169002 TGCATCGAGAATGAA GAAGCCCGC ATT GCGGGCTTC TTCTTTGGGTGTCCG TERM 1756 2169002 - 2169016 + F 89 -12.8 -4.11346 | opp_overlap 2169002 2168999 2168996 2168995, overlap 2168999 2168996 2169010 ATCGAGAATGAAGAA GCCCGC ATT GCGGGC TTCTTCTTTGGGTGT TERM 1757 2169016 - 2169002 - f 86 -12.8 -3.86312 | opp_overlap 2168999 2168996 2169002 2169010, overlap 2168999 2168996 2168995 ATCGAGAATGAAGAA GCCCGC ATT GCGGGC TTCTTCTTTGGGTGT Rpic_2058 2169363 - 2169887 + | transferase hexapeptide repeat Rpic_2059 2170009 - 2171064 + | porin Gram-negative type TERM 1758 2171127 - 2171110 - T 100 -12.7 -5.14965 | opp_overlap 2171110 AGCCTCATGAAAAAA GGGCAGC TTCG GCTGCCC TTTCCTATTGCGCAC TERM 1759 2171110 - 2171127 + T 86 -12.7 -3.92324 | opp_overlap 2171110 AGCCTCATGAAAAAA GGGCAGC TTCG GCTGCCC TTTCCTATTGCGCAC Rpic_2060 2172306 - 2171152 - | L-carnitine dehydratase/bile acid-inducible protein F Rpic_2061 2173292 - 2172312 - | pyruvate carboxyltransferase TERM 1760 2172892 - 2172837 - G 75 -10.3 -3.90588 | gap 2, opp_overlap 2172853, overlap 2172838 TAGCGTGCAACCAAA CGCCGTGCCGACGCCGCCTTCGATCAA GGTC TTGG-CGCCGGCGGCGTCG-CGCGCCG CACGGATACGCGCCA TERM 1761 2174455 - 2174430 - g 100 -15.5 -5.07652 | CCCGGCAAAAGAAAA CGACGCGGAAA ACCA CTTCCGCGTCG TGAGCGCTACGGTGT Rpic_2062 2173490 - 2174458 + | transcriptional regulator, LysR family Rpic_2063 2175920 - 2174481 - | major facilitator superfamily MFS_1 TERM 1762 2175691 - 2175709 + g 79 -2.3 -5.08824 | AAGAACGCATCGGTC GTGGCCT TGAGC AGCCCGC TTTTTTCCATACCGG TERM 1763 2175856 - 2175842 - G 89 -12.8 -4.16016 | opp_overlap 2175844 CCATCCGCGAAGAAA GCGCCG TGG CGGCGC GGGTGTCTTGATCGT Rpic_2064 2178228 - 2176267 - | integral membrane protein Rpic_2065 2178362 - 2178613 + | hypothetical protein Rpic_2066 2179444 - 2179151 - | transposase IS3/IS911 family protein Rpic_2067 2179663 - 2179472 - | hypothetical protein Rpic_2068 2179995 - 2179660 - | hypothetical protein Rpic_2069 2180141 - 2179992 - | hypothetical protein Rpic_2070 2180368 - 2180138 - | hypothetical protein Rpic_2071 2181246 - 2180452 - | hypothetical protein TERM 1764 2181069 - 2181081 + g 75 -7.7 -4.26903 | opp_overlap 2181069 2181064 TAAGCAAAGAGCGAA GGAAG TTG CTTCC TTTTCCTACGGTGAA TERM 1765 2181211 - 2181232 + g 100 -9.4 -5.40464 | AGGGGTCAGCTTGAG GGTTGCGG GGCGAG CCGCGACC TTTTTCTTTGTCATC Rpic_2072 2182491 - 2181268 - | integrase family protein TERM 1766 2182620 - 2182595 - R 100 -10.5 -5.28481 | gap 1, opp_overlap 2182595 GACGGAATGAAAAAA CCCACGA-AGCC TTG AGCTATCGTGGG TTTTTGGACTTCGGC TERM 1767 2182595 - 2182620 + r 89 -9.8 -4.66833 | gap 1, opp_overlap 2182595 GACGGAATGAAAAAA CCCACGA-AGC CTTGA GCTATCGTGGG TTTTTGGACTTCGGC Rpic_2073 2183531 - 2182803 - | DNA polymerase III, epsilon subunit Rpic_2074 2184421 - 2183555 - | formyltetrahydrofolate deformylase Rpic_2075 2185284 - 2184430 - | NUDIX hydrolase TERM 1768 2185718 - 2185703 - g 77 -4.6 -4.67904 | overlap 2185704 GACCAAGCTGAAAAA CGCCTG CGAT CAGGCC ATCGCCGACTGGCTC Rpic_2076 2185389 - 2185784 + | hypothetical protein Rpic_2077 2186370 - 2185810 - | hypothetical protein Rpic_2078 2186631 - 2187533 + | Aspartyl/Asparaginyl beta-hydroxylase TERM 1769 2187587 - 2187571 - f 71 -6.5 -4.14627 | opp_overlap 2187571 GCTCTACACAAAGAA CCGGC CTGAAGC GCCGG TTTTTTGTTGCGCAT TERM 1770 2187571 - 2187587 + F 95 -6.5 -5.45652 | opp_overlap 2187571 GCTCTACACAAAGAA CCGGC CTGAAGC GCCGG TTTTTTGTTGCGCAT Rpic_2079 2187846 - 2188463 + | putative lipoprotein TERM 1771 2188490 - 2188508 + F 100 -11.7 -5.81412 | CGCAACGCGCCAATG CCGCCGT CTCGT ACGGCGG TTTTTTTTGCATGGA TERM 1772 2188976 - 2188962 - g 79 -2.1 -5.00616 | gap 1 GCCGCCTCCAAAAAA CA-CGC ACAT GCGCTG CTGGTCGACAAACAG TERM 1773 2189294 - 2189273 - g 78 -4.4 -4.74801 | gap 1, overlap 2189275 CAACGCCACGAAAAA GCTGC-CGC CCGAC GCGCACAGC ATCTTCACTGTCGAC Rpic_2080 2188677 - 2189828 + | Extracellular ligand-binding receptor Rpic_2081 2189991 - 2190965 + | transcriptional regulator, LysR family TERM 1774 2192204 - 2192184 - g 75 -6.7 -4.37658 | opp_overlap 2192184 2192190, overlap 2192185 AATTTCGCGAGAAAA CGCCCGGCA CGC TGCCTGGCC TGTCGCGCGTGCATT Rpic_2082 2190962 - 2192461 + | FAD dependent oxidoreductase Rpic_2083 2192458 - 2193441 + | binding-protein-dependent transport systems inner membrane component Rpic_2084 2193438 - 2194367 + | binding-protein-dependent transport systems inner membrane component Rpic_2085 2194364 - 2195368 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Rpic_2086 2195365 - 2196366 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Rpic_2087 2196417 - 2197985 + | extracellular solute-binding protein family 5 Rpic_2088 2197991 - 2199871 + | Bile acid-CoA:amino acid N-acyltransferase Rpic_2089 2199868 - 2200458 + | uncharacterized peroxidase-related enzyme TERM 1775 2200486 - 2200507 + T 100 -13 -4.98531 | opp_overlap 2200486 CGCTCCAAAGAAAAA GCCGCAGG CGCACA CCTGCGGC TTTTTCATTTCAGCG TERM 1776 2200507 - 2200486 - T 100 -13.7 -5.27335 | opp_overlap 2200486 CGCTCCAAAGAAAAA GCCGCAGGC GCAC ACCTGCGGC TTTTTCATTTCAGCG Rpic_2090 2202828 - 2200531 - | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 1777 2202797 - 2202807 + g 84 -8.2 -4.55023 | opp_overlap 2202788, overlap 2202788 AGGAAACGGCGGCGT CCGC TGC GCGG TTTTGTAGTCTTCGC Rpic_2091 2203292 - 2202825 - | (2Fe-2S)-binding domain protein TERM 1778 2203433 - 2203408 - R 100 -14.7 -4.74103 | opp_overlap 2203408 CGGCGAATGCAAAAA GGCCCGAGCAC TTGC GCACTCGGGCC TTGGATTCCTGGCGG TERM 1779 2203617 - 2203586 - R 78 -13.8 -3.14211 | opp_overlap 2203591, overlap 2203591 AGTTTCCCTCACGAA CAAAAGGCCCGGTC TCCC GACAAGGCCTTTTG CATCCCACCGCCGAC TERM 1780 2203612 - 2203591 - R 81 -7.9 -4.71426 | opp_overlap 2203591, overlap 2203586 CCCTCACGAACAAAA GGCCCGGTC TCCC GACAAGGCC TTTTGCATCCCACCG Rpic_2092 2203947 - 2203666 - | hypothetical protein TERM 1781 2204054 - 2204082 + H 77 -8.1 -4.31813 | overlap 2204050 CACCCATGAGCCGCT CAATTCGCGCGTG TTG CATGCGTGCGTTG TTGTTTTGATCTGTT Rpic_2093 2204475 - 2206481 + | peptidase S15 TERM 1782 2206508 - 2206527 + F 100 -16.4 -4.86731 | TTCGTGGCAATCGTA CGGCCCGC TTCG GCGGGCCG TTTTCTTTAGACACC Rpic_2094 2206699 - 2206866 + | hypothetical protein Rpic_2095 2207007 - 2208569 + | methyl-accepting chemotaxis sensory transducer TERM 1783 2208616 - 2208641 + F 100 -17.5 -5.00136 | opp_overlap 2208631 TCCAAGCTGTCATTG CGCCCGCTGCC GAAA GGCCGCGGGCG TTTTCTCTTTTATTT Rpic_2096 2208886 - 2209914 + | hypothetical protein TERM 1784 2210574 - 2210599 + G 93 -3.9 -5.31275 | gap 1, overlap 2210578 2210579 CGCTGGTGGTGGTGT GGGCGGCCACGC TGG GCCTGGC-GTTC TTTTTTGTGCTGGCC TERM 1785 2210578 - 2210596 + G 78 -4.4 -4.74611 | overlap 2210574 2210579 GGTGGTGGTGTGGGC GGCCACGC TGG GCCTGGCG TTCTTTTTTGTGCTG Rpic_2097 2209919 - 2210722 + | hypothetical protein TERM 1786 2210820 - 2210838 + T 100 -11.7 -5.40072 | CGGCCCTGCCCTTTG CCGGCTC GTCGG GAGCCGG TTTTTTTACAGCGGA Rpic_2098 2212907 - 2210844 - | SSS sodium solute transporter superfamily TERM 1787 2211780 - 2211750 - G 70 -5.5 -4.2231 | opp_overlap 2211773 2211778, overlap 2211755 AACCATCAGGCAAAA CACC-AGCAGCACGA AGT TCA-GCCGCTCGGTG CCGCGCTCGTTTTCC TERM 1788 2212790 - 2212761 - G 75 -7.8 -4.23674 | gap 1 CGTGACGAACAGAAA CACGTAGCCGAGC CACAC GCCCGGCC-CGCG CACGTGCTCGATCGC TERM 1789 2212861 - 2212886 + g 77 -11.9 -3.63694 | opp_overlap 2212863, overlap 2212863 AGCCCGTAATACAGA AACAGCCGCTT GCGA AAGCGGCTGTC TTGTTGGGAGTCGGT TERM 1790 2212884 - 2212863 - G 100 -14.5 -4.2074 | opp_overlap 2212861 2212863 CCCGTAATACAGAAA CAGCCGCTT GCGA AAGCGGCTG TCTTGTTGGGAGTCG TERM 1791 2212863 - 2212884 + g 84 -14.5 -3.39784 | opp_overlap 2212863, overlap 2212861 CCCGTAATACAGAAA CAGCCGCTT GCGA AAGCGGCTG TCTTGTTGGGAGTCG Rpic_2099 2214912 - 2212930 - | acetate/CoA ligase Rpic_2100 2215149 - 2216087 + | protein of unknown function DUF6 transmembrane Rpic_2101 2216177 - 2216716 + | hypothetical protein TERM 1792 2216866 - 2216876 + F 79 -8.2 -4.4773 | ACCGACCACTGCCCT GCCG CAC CGGC TTTTCATTCCTATAC Rpic_2102 2216906 - 2218429 + | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit TERM 1793 2218519 - 2218549 + G 78 -13.4 -3.51924 | gap 1 CTCTCCGTCCTGCGC GCGATTCGCGCCG AACTGC CGGC-CGAATCGC TTCTCTACCTGGCGG Rpic_2103 2218450 - 2219298 + | glutamate racemase TERM 1794 2219337 - 2219318 - T 79 -12.8 -3.52073 | opp_overlap 2219317 2219316, overlap 2219299 GCCCGAATAGGACAA CGCCGCCC TGAA AGGCGGCG CATTGTCATCTTGGC Rpic_2104 2220636 - 2219359 - | sodium:dicarboxylate symporter TERM 1795 2221085 - 2221065 - g 72 -13.3 -3.09933 | overlap 2221067 GTTGAACCTACCGAA CATGCCGGC GAA ACCGGCATG GCGATCTGGCGCACG Rpic_2105 2221005 - 2221346 + | hypothetical protein Rpic_2106 2221483 - 2223546 + | anaerobic ribonucleoside-triphosphate reductase Rpic_2107 2223543 - 2223719 + | hypothetical protein TERM 1796 2223728 - 2223761 + GF 74 -5.1 -4.58395 | gap 1, opp_overlap 2223724, overlap 2223729 2223730 CCGCTGAGCAACCGC ACTGCC-CGCCGCCGG CCA TCGGCGGCCTGGCACC TTTTTCCAGCGTCGA Rpic_2108 2223682 - 2224395 + | anaerobic ribonucleoside-triphosphate reductase activating protein Rpic_2109 2224400 - 2225077 + | transcriptional regulator, Crp/Fnr family Rpic_2110 2225487 - 2225098 - | DGC domain protein Rpic_2111 2225926 - 2225501 - | hypothetical protein Rpic_2112 2226807 - 2225923 - | peptidase U32 Rpic_2113 2227834 - 2226818 - | peptidase U32 TERM 1797 2227229 - 2227244 + g 70 -7.5 -3.9461 | GCGCACCGCATGCGC GGGCG AACACA CGCCC TTGTTATTGGGAGAA Rpic_2114 2229160 - 2227880 - | putative transmembrane protein TERM 1798 2228336 - 2228312 - G 70 -11.3 -3.35798 | overlap 2228281 2228313 AGCGGCCAGCCACAA CCGCCAGCCCG GAT CGTGCCGGCGA CGCGCGCTGCACACT Rpic_2115 2231557 - 2229236 - | AAA ATPase central domain protein TERM 1799 2231327 - 2231315 - G 83 -6.2 -4.96848 | GCGCGCAGACAAAAA GCGC TGCAG GCGC TGGATGACCGTGACG Rpic_2116 2232073 - 2232729 + | TonB family protein Rpic_2117 2232779 - 2233507 + | MotA/TolQ/ExbB proton channel TERM 1800 2233595 - 2233563 - g 71 -10.6 -3.68529 | opp_overlap 2233551, overlap 2233564 2233567 AGGTGATGAGCGAAA TCAACATGACGCCG CTGGT CGACGTCATGCTGG TGCTGCTGATCATCT TERM 1801 2233594 - 2233564 - g 73 -14.1 -2.80796 | opp_overlap 2233551, overlap 2233563 2233567 GGTGATGAGCGAAAT CAACATGACGCCG CTGGT CGACGTCATGCTG GTGCTGCTGATCATC TERM 1802 2233591 - 2233567 - g 75 -12.2 -3.55122 | opp_overlap 2233551, overlap 2233564 2233563 GATGAGCGAAATCAA CATGACGCCG CTGGT CGACGTCATG CTGGTGCTGCTGATC Rpic_2118 2233517 - 2233927 + | Biopolymer transport protein ExbD/TolR TERM 1803 2233957 - 2233970 + F 85 -3.8 -5.40072 | overlap 2233949 CGTAGCCCTGGTCGC CCGT TCTCGT ACGG TTTTTTTCGCACCAG TERM 1804 2234016 - 2234032 + F 100 -10.8 -5.26119 | opp_overlap 2234016 AGCACCTCCACGCAA CCGGGC TACGC GCCCGG TTTTGTTTTTCGGGC Rpic_2119 2234148 - 2234456 + | putative hemin uptake protein TERM 1805 2234647 - 2234692 + T 76 -6.7 -4.44608 | opp_overlap 2234653 2234659, overlap 2234648 2234653 TCTTCGACCGTGTGC CCAAAGCAAAAAGGGCGCGAC CTCC GCCGCGCCCTCCCTGTTTTGA TTCTTTTTGCGTGAC TERM 1806 2234653 - 2234686 + T 78 -6.5 -4.70739 | opp_overlap 2234653 2234659, overlap 2234648 2234647 ACCGTGTGCCCAAAG CAAAAAGGGCGCGAC CTCC GCCGCGCCCTCCCTG TTTTGATTCTTTTTG TERM 1807 2234686 - 2234653 - T 77 -15.3 -2.71791 | opp_overlap 2234648 2234647 2234653, overlap 2234659 ACCGTGTGCCCAAAG CAAAAAGGGCGCGAC CTCC GCCGCGCCCTCCCTG TTTTGATTCTTTTTG TERM 1808 2234680 - 2234659 - T 100 -15.1 -4.98531 | opp_overlap 2234653 2234648 2234647, overlap 2234653 TGCCCAAAGCAAAAA GGGCGCGAC CTCC GCCGCGCCC TCCCTGTTTTGATTC Rpic_2120 2235127 - 2234714 - | protein of unknown function DUF336 TERM 1809 2235397 - 2235379 - R 100 -13.1 -5.27938 | opp_overlap 2235379 ATGCGCAAAGAAAAA GCCCGGG TATCG CCCGGGC TTGATGTTGCGATGC TERM 1810 2235379 - 2235397 + r 81 -13.8 -3.37245 | opp_overlap 2235379 ATGCGCAAAGAAAAA GCCCGGGT ATC GCCCGGGC TTGATGTTGCGATGC Rpic_2121 2235688 - 2235437 - | hypothetical protein Rpic_2122 2235846 - 2235703 - | hypothetical protein TERM 1811 2235920 - 2235893 - R 77 -11.4 -3.57971 | opp_overlap 2235899 2235900 2235906, overlap 2235900 ATACGTACCGCCAAA GAAAAAAGCTCC CGAA GGAGCCTTTCTC TTGGCCGGCATGCCG TERM 1812 2235913 - 2235900 - R 100 -8.1 -5.63517 | opp_overlap 2235899 2235900 2235906, overlap 2235893 CCGCCAAAGAAAAAA GCTCC CGAA GGAGC CTTTCTCTTGGCCGG Rpic_2123 2236284 - 2235937 - | putative transmembrane protein Rpic_2124 2236658 - 2236419 - | hypothetical protein TERM 1813 2236853 - 2236816 - R 100 -13.5 -4.43189 | gap 1, opp_overlap 2236817 2236820, overlap 2236817 AGGAAGTGTAGAAAA GCGCGCACGGACGGAG TATCGAC CTCCGTCCGTGC-CGT TTTGTAGGACTGTGC TERM 1814 2236817 - 2236852 + r 100 -17 -4.39426 | gap 1, opp_overlap 2236817 2236816, overlap 2236820 GGAAGTGTAGAAAAG CGCGCACGGACGGAG TATCGAC CTCCGTCCGTGC-CG TTTTGTAGGACTGTG TERM 1815 2236852 - 2236817 - R 89 -17 -3.25191 | gap 1, opp_overlap 2236817 2236820, overlap 2236816 GGAAGTGTAGAAAAG CGCGCACGGACGGAG TATCGAC CTCCGTCCGTGC-CG TTTTGTAGGACTGTG TERM 1816 2236820 - 2236850 + r 85 -18.4 -2.53422 | opp_overlap 2236817 2236816, overlap 2236817 AGTGTAGAAAAGCGC GCACGGACGGAG TATCGAC CTCCGTCCGTGC CGTTTTGTAGGACTG Rpic_2125 2237428 - 2236919 - | phasin family protein Rpic_2126 2237618 - 2238028 + | PRC-barrel domain protein Rpic_2127 2238168 - 2238368 + | putative osmotically inducible lipoprotein B1 transmembrane TERM 1817 2238405 - 2238430 + F 100 -14.7 -5.10461 | opp_overlap 2238370 2238369 GCGTGCTGCAAGCTC GGGCCAGGCCA TTGT TTGCCTGGCCC TTTTTGTTGCCTGAG Rpic_2128 2238528 - 2239490 + | nodulation ABC transporter NodI Rpic_2129 2239502 - 2240323 + | ABC-2 type transporter, NodJ family TERM 1818 2240349 - 2240367 + T 100 -12.4 -4.64861 | opp_overlap 2240349 ACGTCCAACAAAAAA GCCCGTCG CGA TGACGGGC TTTCTTTTACGGCGC TERM 1819 2240367 - 2240349 - T 100 -11.7 -5.45652 | opp_overlap 2240349 ACGTCCAACAAAAAA GCCCGTC GCGAT GACGGGC TTTCTTTTACGGCGC Rpic_2130 2241925 - 2240390 - | amidophosphoribosyltransferase Rpic_2131 2242521 - 2242024 - | Colicin V production protein Rpic_2132 2243472 - 2242612 - | Sporulation domain protein TERM 1820 2243424 - 2243369 - G 71 -14.2 -2.71144 | gap 4, opp_overlap 2243391 2243397 GATGCGCGCGAACCA CGCAC-CGCATCGCGAGCCACATCGGCA GCGC TGCCG--GCGGCT-GCGCTGCGTGTGCG TTCGCCTTCAGCGTT Rpic_2133 2244784 - 2243486 - | FolC bifunctional protein TERM 1821 2244859 - 2244829 - R 84 -9.7 -4.56597 | gap 1, opp_overlap 2244835, overlap 2244832 CGGGCCGCGCAAAAA CAAGAAGCGCGGAC TCTC GCCCGCGCTTCG-G TTCAACAGATGTGCC TERM 1822 2244857 - 2244832 - R 100 -16.9 -4.40561 | opp_overlap 2244835, overlap 2244829 GCCGCGCAAAAACAA GAAGCGCGGAC TCTC GCCCGCGCTTC GGTTCAACAGATGTG Rpic_2134 2245750 - 2244878 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Rpic_2135 2246578 - 2245781 - | tryptophan synthase, alpha subunit Rpic_2136 2247414 - 2246593 - | DNA methylase N-4/N-6 domain protein Rpic_2137 2248624 - 2247431 - | tryptophan synthase, beta subunit Rpic_2138 2249422 - 2248721 - | Phosphoribosylanthranilate isomerase TERM 1823 2249346 - 2249329 - G 73 -6.3 -4.38141 | gap 1, overlap 2249326 2249331 GTGGATAGAAAACAA GC-CCGAT CGC ATCGGCGC CGATTGCGACGGCGT Rpic_2139 2250261 - 2249437 - | tRNA pseudouridine synthase A TERM 1824 2250318 - 2250292 - R 100 -20.2 -5.27938 | ATGCGGAAAGAAAAA CGCCGGCAGGAT ACC ACCCTGCCGGCG CTGTCGATGGCGTAG Rpic_2140 2253251 - 2250345 - | putative transmembrane protein TERM 1825 2251348 - 2251366 + g 72 -6.6 -4.20918 | CGCTCCGGATGTTGC TCCAGTGC CTC GCGCAGGA TTTCTTCGGCTTGCA TERM 1826 2252355 - 2252395 + g 78 -8.1 -4.38712 | opp_overlap 2252349 GCCGGCAAAGCCGGA CGTCTGCGCGATGACTTCG CGG CGGGCTTCGCGCGCAGGCG TTTTCTGCGCCTCCA TERM 1827 2252758 - 2252735 - G 70 -10.9 -3.35813 | overlap 2252750 GGGCAGCCGAAGCAA CCGGCGCCG ACTCAA CGGCGCCCG GCGTCGTCGCCTGCA TERM 1828 2253535 - 2253555 + r 89 -15.4 -3.33696 | opp_overlap 2253535 GCCCAGATGGCACAA CGCCGCGC AGGCC GCGCGGCG TTGGTTGAAAAAGCA TERM 1829 2253555 - 2253535 - R 89 -16.1 -3.34962 | opp_overlap 2253535 GCCCAGATGGCACAA CGCCGCGCA GGC CGCGCGGCG TTGGTTGAAAAAGCA Rpic_2141 2254742 - 2253639 - | aspartate-semialdehyde dehydrogenase TERM 1830 2254821 - 2254835 + r 100 -8.6 -5.55664 | AACGGACACGACGGA CGATCT ACG AGATCG TTTTTTTGGTAATGA Rpic_2142 2255064 - 2254825 - | hypothetical protein Rpic_2143 2256153 - 2255083 - | 3-isopropylmalate dehydrogenase Rpic_2144 2256833 - 2256183 - | 3-isopropylmalate dehydratase, small subunit Rpic_2145 2258266 - 2256857 - | 3-isopropylmalate dehydratase, large subunit TERM 1831 2258466 - 2258444 - R 100 -12.7 -5.45652 | gap 1, opp_overlap 2258423 2258444 ACGTGCAACAAAAAA CCCCGC-CGG TTTC CCGAGCGGGG TTTCTTCAAGGCGAA TERM 1832 2258444 - 2258466 + r 95 -12.7 -4.15044 | gap 1, opp_overlap 2258444, overlap 2258423 ACGTGCAACAAAAAA CCCCGC-CGG TTTC CCGAGCGGGG TTTCTTCAAGGCGAA Rpic_2146 2259792 - 2258491 - | citrate synthase I Rpic_2147 2260201 - 2259914 - | protein of unknown function DUF339 TERM 1833 2260245 - 2260214 - R 100 -20.3 -3.87373 | CATACTTTCTAGAAA TGTGTCGCCGGAG AAACCG CTCCGGCGACACA CAATGCCAAAGTGCC Rpic_2148 2260974 - 2260273 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein Rpic_2149 2262775 - 2260997 - | succinate dehydrogenase, flavoprotein subunit Rpic_2150 2263144 - 2262779 - | succinate dehydrogenase, hydrophobic membrane anchor protein Rpic_2151 2263565 - 2263155 - | succinate dehydrogenase, cytochrome b556 subunit Rpic_2152 2264647 - 2263838 - | transcriptional regulator, GntR family TERM 1834 2264362 - 2264381 + g 88 -10 -4.37092 | gap 1 CGAAGGTGCCCTTGC CCTGG-CGC CGC GCGACCAGG TTTTCTGCCGCCAAT Rpic_2153 2265000 - 2265986 + | malate dehydrogenase TERM 1835 2266036 - 2266008 - f 100 -11 -5.4833 | gap 1, opp_overlap 2266008 TGATCTAAGAAAAAA CCGGAGCGGATCG GCAG CGAACC-CTCCGG TTTTTTTACACCCGC TERM 1836 2266008 - 2266036 + F 100 -11 -5.40072 | gap 1, opp_overlap 2266008 TGATCTAAGAAAAAA CCGGAGCGGATCG GCAG CGAACC-CTCCGG TTTTTTTACACCCGC TERM 1837 2266108 - 2266118 + G 70 -2.4 -4.63218 | opp_overlap 2266099 ATACCACCCCGTGCA CCCC ACC GAGG TTTTGTTCCAGGACG Rpic_2154 2266103 - 2267083 + | HpcH/HpaI aldolase Rpic_2155 2267107 - 2268003 + | methylisocitrate lyase TERM 1838 2268409 - 2268391 - g 75 -3 -4.74801 | GAAGGTCACCAAAAA GGCTGC TCCTGTT GCCGCC GCCAAGCCCGAAGGC Rpic_2156 2268260 - 2268814 + | putative signal peptide protein Rpic_2157 2268850 - 2269248 + | hypothetical protein Rpic_2158 2269325 - 2272030 + | aconitate hydratase 1 TERM 1839 2272068 - 2272085 + F 100 -12.7 -5.4833 | TGGAGCAGACTGGAA CCGGCTC TTCG GAGCCGG TTTTTTATTGCCTGC Rpic_2159 2272248 - 2272529 + | hypothetical protein Rpic_2160 2272627 - 2273838 + | hypothetical protein TERM 1840 2273875 - 2273860 - f 70 -10.4 -3.54543 | opp_overlap 2273860 ACGCACTTTGGCAAA GCCACC TTCG GGTGGC TTTTTTATTGCTCCG TERM 1841 2273860 - 2273875 + F 100 -10.4 -5.5112 | opp_overlap 2273860 ACGCACTTTGGCAAA GCCACC TTCG GGTGGC TTTTTTATTGCTCCG TERM 1842 2274817 - 2274829 + G 78 -7.7 -4.37886 | overlap 2274814 CTCGAACAGCAGGTG TCGTG GCG CACGA TTTTCTGGCAGATGG Rpic_2161 2274001 - 2275599 + | extracellular solute-binding protein family 5 TERM 1843 2276585 - 2276562 - g 74 -11.1 -3.61103 | opp_overlap 2276567, overlap 2276565 CAAGTCGACGGCAAA GAAGACGAC GAAGAA GTCGTCTTC CAACTAAGCGCAACG Rpic_2162 2275756 - 2276592 + | putative lipoprotein transmembrane Rpic_2163 2277778 - 2276633 - | peptidase M14 carboxypeptidase A Rpic_2164 2278566 - 2277793 - | protein of unknown function DUF328 Rpic_2165 2278604 - 2279128 + | Nucleotide binding protein PINc TERM 1844 2280303 - 2280269 - g 100 -18.1 -4.15044 | gap 1, opp_overlap 2280276 TGCTTCGCCAAGAAA GACGAAACGCTCCAGG TTGC CCTGGAGCGTTT-GTC GAAGGTGTAAAACCG TERM 1845 2280276 - 2280297 + G 93 -15.9 -3.87373 | opp_overlap 2280269 CCAAGAAAGACGAAA CGCTCCAGG TTGC CCTGGAGCG TTTGTCGAAGGTGTA Rpic_2166 2279141 - 2280313 + | aminotransferase class I and II Rpic_2167 2280987 - 2280334 - | putative GST-related protein Rpic_2168 2281097 - 2282605 + | 3-hydroxybutyryl-CoA dehydrogenase Rpic_2169 2282639 - 2283418 + | Enoyl-CoA hydratase/isomerase Rpic_2170 2283431 - 2284165 + | Phosphoglycerate mutase TERM 1846 2284332 - 2284311 - g 75 -13.7 -3.03124 | gap 1 GTGGATGCGCGAACA CGTGGCCGGC TTT GCCGGCC-CG CTCACGGTTGAACAG Rpic_2171 2284204 - 2285292 + | aminoglycoside phosphotransferase Rpic_2172 2285707 - 2285303 - | hypothetical protein TERM 1847 2285363 - 2285413 + g 100 -16.9 -5.48825 | gap 2, overlap 2285395 CTCCAGCTCCAGCAC CACCCCGCCCGG-CAACTGCAC-GA AGA TCTGTGCAGCAGGCCGCGCGGGGTG TTTTTTTACCTGGTG Rpic_2173 2286417 - 2285704 - | short-chain dehydrogenase/reductase SDR TERM 1848 2286507 - 2286493 - H 81 -4.2 -4.93877 | opp_overlap 2286480 TTTCATCAAACAAAA GCAAGA TAA TCTGGC TATGCTTTGATGATT Rpic_2174 2286542 - 2287537 + | transcriptional regulator, LysR family Rpic_2175 2288666 - 2287722 - | transcriptional regulator, LysR family TERM 1849 2289084 - 2289128 + G 76 -13.6 -3.05384 | gap 1, opp_overlap 2289079 2289108 2289109, overlap 2289086 2289098 ATCCAGATCACCCCG GAGGGATTGCGCACGGG-CAG CAAA CTGGCCTTTGCGCAGGCCCTC TTCCATCGCGGCGAC Rpic_2176 2288760 - 2289197 + | thioesterase superfamily protein Rpic_2177 2289274 - 2290533 + | acyl-CoA dehydrogenase domain protein TERM 1850 2290565 - 2290583 + F 95 -7.3 -5.41143 | overlap 2290566 ACCGTTCACTCCTTA ACCCCGC CTTGA GCGGGGA TTTTTTTGCCCGCTG TERM 1851 2290566 - 2290582 + F 76 -10.8 -3.83963 | overlap 2290565 CCGTTCACTCCTTAA CCCCGC CTTGA GCGGGG ATTTTTTTGCCCGCT Rpic_2178 2290703 - 2291395 + | Glutathione S-transferase domain TERM 1852 2291421 - 2291436 + F 100 -11.8 -4.73388 | opp_overlap 2291421 2291416 CATCACGAGACAAAA GGCCGC GCAT GCGGCC TTTTTAATGGCCGTT TERM 1853 2291436 - 2291421 - f 95 -11.8 -4.58424 | opp_overlap 2291421, overlap 2291416 CATCACGAGACAAAA GGCCGC GCAT GCGGCC TTTTTAATGGCCGTT TERM 1854 2291846 - 2291865 + G 70 -11.4 -3.30243 | gap 1 GTGTGGTGCTCTATG CCGC-GGGC GGC GCCCTGCGG TTGTGGCCCGTGCAT Rpic_2179 2291512 - 2292171 + | Isoprenylcysteine carboxyl methyltransferase Rpic_2180 2292482 - 2292180 - | hypothetical protein Rpic_2181 2293179 - 2292559 - | urease accessory protein UreG Rpic_2182 2293880 - 2293191 - | Urease accessory protein UreF Rpic_2183 2294499 - 2293873 - | UreE urease accessory domain protein TERM 1855 2294717 - 2294699 - R 70 -5.2 -4.52415 | overlap 2294701 AGCTAGAACAAGAAA TACCGCTG CGC CATCGGCA ACACCTCCGCCGGCT Rpic_2184 2296404 - 2294686 - | urease, alpha subunit Rpic_2185 2296723 - 2296418 - | urease, beta subunit Rpic_2186 2297354 - 2296737 - | HupE/UreJ protein Rpic_2187 2297699 - 2297397 - | urease, gamma subunit Rpic_2188 2298666 - 2297779 - | Urease accessory protein UreD TERM 1856 2298323 - 2298370 + g 70 -11.2 -3.33737 | gap 1 TCGAGCCGCGCGCCT GTCTCT-GCCCGGATGGCAACGC GCT GCGTGGCCGTGCGGCCGAGCGAC TTGTACCACTTGGTG Rpic_2189 2299461 - 2298769 - | urea ABC transporter, ATP-binding protein UrtE Rpic_2190 2300314 - 2299463 - | urea ABC transporter, ATP-binding protein UrtD Rpic_2191 2301477 - 2300311 - | urea ABC transporter, permease protein UrtC TERM 1857 2300456 - 2300442 - G 79 -4.2 -4.93296 | TCACCAGCACAAAAA TCGCAC CGA GCACGA ACAGCCAGTACTCCG Rpic_2192 2303110 - 2301479 - | urea ABC transporter, permease protein UrtB TERM 1858 2303204 - 2303174 - R 100 -19.7 -3.53444 | opp_overlap 2303169 GCAGCGTCGTTCAAA GGACCGGCCGCGC TGTAT GCGCCGCCGGTCC GCCTGATTACTTCAC Rpic_2193 2304467 - 2303211 - | urea ABC transporter, urea binding protein TERM 1859 2304706 - 2304688 - R 100 -13.8 -5.01422 | CGATACAAAAAGAAA GGCCGGCA TCG CGCCGGCC TCGGGAACTTGAAAA Rpic_2194 2305210 - 2304731 - | MaoC domain protein dehydratase TERM 1860 2305045 - 2305020 - G 70 -5.3 -4.39426 | overlap 2305021 2305043 2305044 GACAGCGTCAGAAAA CCGTGTGCCAC CGGT GCGCCAAACGG CGACTCGCGCCTGGC Rpic_2195 2305733 - 2305248 - | MaoC domain protein dehydratase TERM 1861 2305776 - 2305755 - R 100 -17.3 -3.60151 | opp_overlap 2305752 2305749 TCCTCCAAATGACAA CGCCCCGCA CGAA TGCGGGGCG TTCAGGTTTGCCGTT Rpic_2196 2306920 - 2305790 - | acyl-CoA dehydrogenase domain protein Rpic_2197 2308152 - 2306956 - | acyl-CoA dehydrogenase domain protein Rpic_2198 2308698 - 2308237 - | protein of unknown function DUF1178 TERM 1862 2308786 - 2308743 - R 84 -11 -4.13767 | overlap 2308744 TCCCCGATTCGAAAA TTTGTGAACGGTCGTGCTAA TTTT TTCGCACGACCGTTCGCCAT GATAGCGGCAATAGG TERM 1863 2308785 - 2308744 - R 80 -14.5 -3.08046 | overlap 2308743 CCCCGATTCGAAAAT TTGTGAACGGTCGTGCTAA TTTT TTCGCACGACCGTTCGCCA TGATAGCGGCAATAG Rpic_2199 2309447 - 2308836 - | NUDIX hydrolase Rpic_2200 2309806 - 2309492 - | putative transmembrane protein Rpic_2201 2311295 - 2309820 - | proton-translocating NADH-quinone oxidoreductase, chain N TERM 1864 2311279 - 2311256 - G 80 -5.2 -4.84359 | overlap 2311259 CCAGCGCGAGAAAAA CGATTGGGGC AAAA GCCGCAATAG AGGAGGACGATTGCA Rpic_2202 2312778 - 2311312 - | proton-translocating NADH-quinone oxidoreductase, chain M Rpic_2203 2314851 - 2312791 - | proton-translocating NADH-quinone oxidoreductase, chain L TERM 1865 2313831 - 2313851 + g 70 -13.9 -2.62515 | CCGCGACTTGGTAAG CCGACGCGC CCA GCGCGACGG TCATGTAACCGAGTT Rpic_2204 2315192 - 2314881 - | NADH-ubiquinone oxidoreductase chain 4L Rpic_2205 2315842 - 2315210 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TERM 1866 2315910 - 2315884 - R 90 -14.4 -3.64822 | opp_overlap 2315884 ACGCGCTTATCCAAA GCCGCGATGGCG TGA CGCCACCGCAAC TGGTTGGCTCTCGAG Rpic_2206 2316480 - 2315989 - | NADH-quinone oxidoreductase, chain I Rpic_2207 2317565 - 2316501 - | NADH dehydrogenase (quinone) Rpic_2208 2319925 - 2317574 - | NADH-quinone oxidoreductase, chain G Rpic_2209 2321233 - 2319938 - | NADH-quinone oxidoreductase, F subunit Rpic_2210 2321737 - 2321234 - | NADH-quinone oxidoreductase, E subunit Rpic_2211 2323106 - 2321853 - | NADH dehydrogenase I, D subunit Rpic_2212 2323722 - 2323120 - | NADH (or F420H2) dehydrogenase, subunit C Rpic_2213 2324206 - 2323724 - | NADH-quinone oxidoreductase, B subunit Rpic_2214 2324572 - 2324213 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Rpic_2215 2325362 - 2325000 - | preprotein translocase, SecG subunit Rpic_2216 2326171 - 2325425 - | Triose-phosphate isomerase TERM 1867 2326057 - 2326071 + g 71 -7.8 -4.18762 | opp_overlap 2326052 2326054, overlap 2326056 2326055 ACGGCACACACACGG CCAGCG TGG CGTTGG TTTTGCCTGCCGCTT Rpic_2217 2327255 - 2326251 - | NAD(P)H quinone oxidoreductase, PIG3 family Rpic_2218 2328247 - 2327294 - | hypothetical protein TERM 1868 2328332 - 2328295 - R 100 -19.5 -3.61178 | gap 1, opp_overlap 2328303, overlap 2328303 GCGACGCAGTGTAAA CAA-AAAAACGGCTGGAC ATC GTCCAGCCGTTTTTCTTG GCGAAAATCGCTCGC TERM 1869 2328323 - 2328303 - R 100 -16.9 -5.95539 | opp_overlap 2328303, overlap 2328295 GTGTAAACAAAAAAA CGGCTGGAC ATC GTCCAGCCG TTTTTCTTGGCGAAA TERM 1870 2328303 - 2328323 + r 100 -16.9 -5.06414 | opp_overlap 2328295 2328303 GTGTAAACAAAAAAA CGGCTGGAC ATC GTCCAGCCG TTTTTCTTGGCGAAA Rpic_2219 2330522 - 2328348 - | Polyribonucleotide nucleotidyltransferase TERM 1871 2329662 - 2329692 + g 70 -11 -3.38178 | overlap 2329654 GCCATCGGCTTCCAC GCCGGCTTCGGCCA GCT TGGCCGCAACCGAC TTGTAGACTTCCTTC TERM 1872 2330779 - 2330808 + r 84 -10.7 -4.25104 | opp_overlap 2330780, overlap 2330780 GCCGCCAAAAACAAA ATGCCTGCATCAG CACG CTGACGCAGGCAC TTTTCATCACGCGCA TERM 1873 2330780 - 2330807 + r 78 -14.2 -3.14848 | opp_overlap 2330780, overlap 2330779 CCGCCAAAAACAAAA TGCCTGCATCAG CACG CTGACGCAGGCA CTTTTCATCACGCGC TERM 1874 2330807 - 2330780 - R 100 -16.4 -5.26119 | opp_overlap 2330780 2330779 CCGCCAAAAACAAAA TGCCTGCATCAG CACG CTGACGCAGGCA CTTTTCATCACGCGC Rpic_2220 2331110 - 2330841 - | ribosomal protein S15 TERM 1875 2331095 - 2331109 + g 71 -4.2 -4.5287 | TGTCTTGCTTTTTGA TGTCAG CGA CGGACA TTTTGATTCCTTTGA Rpic_2221 2332528 - 2331269 - | putative transporter signal peptide protein Rpic_2222 2332712 - 2333164 + | putative transmembrane protein TERM 1876 2333228 - 2333185 - T 86 -14.6 -3.33261 | gap 1, opp_overlap 2333178 CGTTAACCGCCAGAA CGGCAACTTCCACGCGAGGCG CAT CGCCTGGCGTGGACGTT-CGG GTCGGCCATGTCGTG Rpic_2223 2334950 - 2333409 - | 2-isopropylmalate synthase TERM 1877 2335023 - 2335074 + r 95 -20.2 -2.71011 | opp_overlap 2335033, overlap 2335026 GTTTTTTGCGGCGCA GAATGCAAAACGCCCCGGCGTGCA TGGT TGCAGGCCGGGGCGCTGTGAATTC TGGTTCGCGAAAACT TERM 1878 2335026 - 2335071 + r 93 -16.1 -3.50853 | opp_overlap 2335033, overlap 2335023 TTTTGCGGCGCAGAA TGCAAAACGCCCCGGCGTGCA TGGT TGCAGGCCGGGGCGCTGTGAA TTCTGGTTCGCGAAA TERM 1879 2335064 - 2335033 - R 100 -21.6 -4.3208 | opp_overlap 2335026 2335023 GCGCAGAATGCAAAA CGCCCCGGCGTGCA TGGT TGCAGGCCGGGGCG CTGTGAATTCTGGTT TERM 1880 2335079 - 2335095 + r 75 -2.9 -4.90013 | overlap 2335080 2335081 GCTGTGAATTCTGGT TCGCGAA AAC TTGGCGG TTTTTGCTTGCCTTG TERM 1881 2335270 - 2335234 - R 72 -2.2 -4.76892 | gap 1, opp_overlap 2335258, overlap 2335227 2335235 AGACGAATTCAAAAA TTGACGCAAGCGC-ACA ATGG TGCAGCGCATGGGTCAC TCATGTGCTTCGTCC Rpic_2224 2336139 - 2335267 - | CDP-diacylglycerol/serine O-phosphatidyltransferase Rpic_2225 2336800 - 2336153 - | phosphatidylserine decarboxylase related protein TERM 1882 2336923 - 2336906 - R 100 -12.7 -5.70829 | opp_overlap 2336906 AACAGCATAAAAAAA GCCAGCC CGAA GGCTGGC TTTCTCGCACAAGAT TERM 1883 2336906 - 2336923 + r 86 -12.7 -3.85817 | opp_overlap 2336906 AACAGCATAAAAAAA GCCAGCC CGAA GGCTGGC TTTCTCGCACAAGAT Rpic_2226 2337963 - 2336947 - | ketol-acid reductoisomerase TERM 1884 2337374 - 2337398 + g 75 -10.7 -3.93262 | opp_overlap 2337375, overlap 2337365 2337375 GTACCGCCGCACAGC ACGGCCTGTTC GCC GAACAGGTCGG TTTCGGTTTCTTCGC TERM 1885 2337375 - 2337397 + g 75 -14.2 -2.95234 | opp_overlap 2337375, overlap 2337374 2337365 TACCGCCGCACAGCA CGGCCTGTTC GCC GAACAGGTCG GTTTCGGTTTCTTCG Rpic_2227 2338530 - 2338039 - | acetolactate synthase, small subunit Rpic_2228 2340287 - 2338530 - | acetolactate synthase, large subunit, biosynthetic type TERM 1886 2340486 - 2340524 + H 72 -2.8 -4.7373 | overlap 2340487 CGATTCCCCACTCCC GGCGGCCCGCCCCCCAGT CGG ACTGTCCGCGGGGCCGCA TTTTTGCTAGCATCG Rpic_2229 2340647 - 2341213 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 1887 2341375 - 2341348 - g 100 -4.6 -5.75342 | opp_overlap 2341365 CTTGCGCAAAAAAAA GCGGAAGCGCCG AGCA CGGTGCACTCGC CTGCCTTGGCGATGC Rpic_2230 2341210 - 2341650 + | putative transmembrane protein Rpic_2231 2341662 - 2342516 + | putative transmembrane protein Rpic_2232 2342613 - 2343137 + | RDD domain containing protein Rpic_2233 2343168 - 2344184 + | PGAP1 family protein TERM 1888 2345180 - 2345155 - g 70 -13.9 -2.51464 | opp_overlap 2345157, overlap 2345154 TGATGACGGACGAAG CGCGCCGCCGC GGCT GCGACGGCGTG GTCTGCGGGCATATC Rpic_2234 2344428 - 2345378 + | metallophosphoesterase Rpic_2235 2345456 - 2346508 + | glycosyl transferase group 1 Rpic_2236 2346521 - 2346985 + | diacylglycerol kinase TERM 1889 2347718 - 2347758 + G 71 -7.4 -4.10552 | overlap 2347696 GCTACCACATCCTGT CGATCCTCGCGCCTTACC TGCGC GGCAAGCCGCGGCGAGCG TTTGATTTGCTGGCG Rpic_2237 2347123 - 2347833 + | transcriptional regulator, TetR family Rpic_2238 2347830 - 2348414 + | hypothetical protein Rpic_2239 2348421 - 2349017 + | putative transmembrane protein Rpic_2240 2349616 - 2349038 - | protein of unknown function DUF924 TERM 1890 2349497 - 2349472 - G 72 -11.1 -3.53012 | CGTCGCCCGTGGAAA GCGCCTCCCAC AGCG GCAGGAAGCGC GCGCGGATCTCGGCA Rpic_2241 2350070 - 2349666 - | globin Rpic_2242 2352641 - 2350107 - | protein of unknown function DUF214 Rpic_2243 2353798 - 2352698 - | transcriptional regulator of molybdate metabolism, LysR family Rpic_2244 2353957 - 2354805 + | extracellular solute-binding protein family 1 Rpic_2245 2355797 - 2354850 - | transcriptional regulator, LysR family TERM 1891 2355850 - 2355837 - H 75 -2.3 -5.0133 | opp_overlap 2355849 GACCCTTCTAAAAAA CGTGC TTGA GGACG CTGTCAGTGTATGTC TERM 1892 2356833 - 2356796 - g 72 -8.9 -4.14739 | GTACGCACTGCAAAA GCGTGACGGCTGGATCG AGAT CGGCGCTGCCGTCTCGC TGGAAAAGGCCTACG Rpic_2246 2356011 - 2357525 + | xanthine dehydrogenase, small subunit Rpic_2247 2357530 - 2359896 + | xanthine dehydrogenase, molybdopterin binding subunit Rpic_2248 2359913 - 2360947 + | xanthine dehydrogenase accessory protein XdhC TERM 1893 2361634 - 2361588 - g 79 -15.2 -3.01791 | AGGCCCGGCGCAATA CGTGATCGACGCCCTCGACATC CTC AAGGTGGAGCGCATCGATCACG GCGTACGCGCCATCG Rpic_2249 2360950 - 2361987 + | adenosine deaminase Rpic_2250 2362004 - 2363338 + | guanine deaminase Rpic_2251 2363576 - 2364148 + | protein of unknown function UPF0016 Rpic_2252 2365787 - 2364192 - | hypothetical protein Rpic_2253 2368122 - 2365798 - | hypothetical protein TERM 1894 2368116 - 2368103 - G 74 -5.3 -4.56597 | opp_overlap 2368108 GGGCCGCCTGAAAAA GATTC GATT GAATC AGTCATTGATGCGTC Rpic_2254 2370741 - 2368153 - | type VI secretion system Vgr family protein TERM 1895 2371179 - 2371152 - R 91 -13.5 -3.91911 | gap 1 TCGAGCTGAAGGAAA CGCGCCACCCGT GGTGA ACGGGTGG-GCG AGCATTGACAAGGTT TERM 1896 2371592 - 2371577 - R 100 -11.8 -5.94713 | AGGCGAGAAAAAAAA CGGGGC CGCA GCCCCG TTCAACCCTCACCGG Rpic_2255 2372932 - 2371676 - | protein of unknown function DUF989 TERM 1897 2371939 - 2371989 + g 72 -13.1 -3.1506 | overlap 2371940 2371952 2371969 AGTCCGAACCGCCAC CGGCGGCCGCTGGAGCCGCAGCA CCGCC TTCTGCCGCTGTTGCGGGCGCCG TTGCTGCCGCGGTTT Rpic_2256 2373303 - 2372950 - | hydroxyisourate hydrolase TERM 1898 2373384 - 2373368 - H 74 -10.9 -3.53444 | overlap 2373382 GCACCTCGCGCCAAA CCCTTGT GTG ACAAGGG CTGGCGTCGGGGCCC Rpic_2257 2373681 - 2374439 + | transcriptional regulator, GntR family Rpic_2258 2374656 - 2376065 + | xanthine permease Rpic_2259 2376070 - 2377488 + | Hydroxydechloroatrazine ethylaminohydrolase Rpic_2260 2377600 - 2378562 + | urate catabolism protein TERM 1899 2378714 - 2378666 - g 79 -15.2 -3.01712 | GTGGGTTGCCGAACA GGCCGCCACGCAGCGCC-CGTTCG CCT CGGCCGAGGCGCT-CGCGGCTGCC ATGCGCAATGCCGTG Rpic_2261 2378559 - 2379083 + | hypothetical protein Rpic_2262 2379236 - 2380306 + | porin Gram-negative type TERM 1900 2380323 - 2380359 + T 100 -16.7 -4.07568 | opp_overlap 2380328, overlap 2380328 CAGTCGGCAGCAAAG AAAAACGGCGCCTGG ACTTTCC CCAGGCGCCGTTTTC TTTTGGGCCGCCAAC TERM 1901 2380354 - 2380328 - T 100 -17.3 -5.33405 | opp_overlap 2380323 2380328 GGCAGCAAAGAAAAA CGGCGCCTGGA CTTTC CCCAGGCGCCG TTTTCTTTTGGGCCG TERM 1902 2380328 - 2380354 + T 100 -16.6 -5.07652 | opp_overlap 2380328, overlap 2380323 GGCAGCAAAGAAAAA CGGCGCCTGG ACTTTCC CCAGGCGCCG TTTTCTTTTGGGCCG Rpic_2263 2382726 - 2380405 - | Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase TERM 1903 2380736 - 2380756 + g 81 -7.6 -4.56597 | gap 1 AGGTCATACGCAGCG CGCATGCGG CGGG CCG-ATGCG TTTTTCGACGAGCCG Rpic_2264 2383690 - 2383022 - | putative lipoprotein transmembrane TERM 1904 2385037 - 2385012 - g 70 -7.7 -3.96681 | gap 1, overlap 2385013 CGAAGAAATCAACAA CTTC-TACACCG TCA CGGTGTACGAAA AAGGCGCCGAAGTCG TERM 1905 2385058 - 2385040 - g 74 -2.3 -4.7254 | gap 1, overlap 2385041 ACGGTGTACGAAAAA GGCGC-CG AAGT CGTGCGCA TGTACCAGACGCTGC Rpic_2265 2383843 - 2386545 + | aminopeptidase N TERM 1906 2387588 - 2387557 - g 75 -4.4 -4.65895 | gap 1 CCTGGGATCGAAAAA CGAGGTG-GATCGTG TCA CGCAATATCACCTCG AGGCCAAGCAAACGC Rpic_2266 2386592 - 2387608 + | Inositol phosphatase/fructose-16-bisphosphatase TERM 1907 2387637 - 2387601 - T 78 -10.1 -3.91911 | overlap 2387622 TCGAGGCCAAGCAAA CGCCGTAACAACGTCAT ATA AGGCCGTTGTTCCAGCG GGCCTTGCAGAGCGA TERM 1908 2387793 - 2387772 - T 100 -11.6 -5.89921 | opp_overlap 2387772 ACCAGAATAAAAAAA GCCCAGTC TTCATC GACTGGGC TTTTTGCTTTGCGCC TERM 1909 2387772 - 2387793 + T 100 -11.6 -4.98531 | opp_overlap 2387772 ACCAGAATAAAAAAA GCCCAGTC TTCATC GACTGGGC TTTTTGCTTTGCGCC Rpic_2267 2388315 - 2387830 - | Peptidoglycan-binding LysM Rpic_2268 2388618 - 2389652 + | esterase, PHB depolymerase family Rpic_2269 2389965 - 2389660 - | hypothetical protein TERM 1910 2389769 - 2389796 + g 78 -13.4 -3.53444 | CGCGTGGGCAGCGGG CGCTCGTCGTGC GAAT GGGCGACGAGCG TTTCGACGGCCGTCG TERM 1911 2389861 - 2389847 - G 76 -5.6 -4.4648 | opp_overlap 2389854 2389856, overlap 2389848 ATGCGCACGACAAAA TCCCAC TGC GTGGGT CCCTGCCCGCTCTTG TERM 1912 2390058 - 2390036 - R 100 -11.3 -5.00616 | opp_overlap 2390036 2390033 2390038 CTCGCTTGCAAAAAA CAGACCGGT ACATG ACCGGCCTG TCGTTGCATCATCAG Rpic_2270 2390507 - 2390070 - | putative signal peptide protein Rpic_2271 2391517 - 2390582 - | transcriptional regulator, LysR family TERM 1913 2391510 - 2391526 + g 79 -2.2 -5.00884 | TTCAGAGGAGGCAGC TTGCGC ATATC GCGTGA TTTTTTCGCACAGAT Rpic_2272 2391666 - 2392499 + | protein of unknown function DUF6 transmembrane Rpic_2273 2393072 - 2392509 - | transcription elongation factor GreB TERM 1914 2393282 - 2393315 + r 100 -22.7 -3.85817 | opp_overlap 2393282 2393287 2393301, overlap 2393287 AACCTAATACGAGAA TGAAAGGGGCTTCCA AAAA TGGAAGCCCCTTTCA TTTGTCCGCGCCGGT TERM 1915 2393315 - 2393282 - R 100 -22.7 -3.53189 | opp_overlap 2393282 2393287, overlap 2393287 2393301 AACCTAATACGAGAA TGAAAGGGGCTTCCA AAAA TGGAAGCCCCTTTCA TTTGTCCGCGCCGGT TERM 1916 2393310 - 2393287 - R 100 -16.8 -4.03782 | opp_overlap 2393287 2393282, overlap 2393282 2393301 AATACGAGAATGAAA GGGGCTTCCA AAAA TGGAAGCCCC TTTCATTTGTCCGCG TERM 1917 2393287 - 2393310 + r 100 -16.8 -4.13995 | opp_overlap 2393282 2393287 2393301, overlap 2393282 AATACGAGAATGAAA GGGGCTTCCA AAAA TGGAAGCCCC TTTCATTTGTCCGCG TERM 1918 2393379 - 2393400 + r 100 -11.5 -5.95539 | opp_overlap 2393379 GCCACAACCAAAAAA GGCGAAGCC ATGT GGCCTCGCC TTTTTTTGTTTCCGC TERM 1919 2393400 - 2393379 - R 100 -13.7 -5.32944 | opp_overlap 2393379 GCCACAACCAAAAAA GGCGAAGCC ATGT GGCCTCGCC TTTTTTTGTTTCCGC Rpic_2274 2395844 - 2393424 - | (p)ppGpp synthetase I, SpoT/RelA TERM 1920 2394240 - 2394270 + g 75 -4.5 -4.62783 | opp_overlap 2394240 GTTCGGCTTTGAATA CGGCGCCGTCACC ACCTC GACGATGTCGCCG TTTTTCAGCTCCGTA Rpic_2275 2396313 - 2396110 - | DNA-directed RNA polymerase, omega subunit Rpic_2276 2397115 - 2396450 - | Guanylate kinase Rpic_2277 2398073 - 2397138 - | domain of unknown function DUF1732 TERM 1921 2398141 - 2398158 + H 79 -8.3 -4.51196 | opp_overlap 2398130, overlap 2398140 TTAACGCCCGGAATT GGCGGGG AATC CCCCACC TTTTGTCGCTTTACA Rpic_2278 2398225 - 2399250 + | serine/threonine protein kinase TERM 1922 2399403 - 2399389 - g 75 -7 -4.41302 | overlap 2399390 2399391 CAGGAAAGCAAGAAA GGCGCG CGA CGCGTC AACCAGGACCGCATG TERM 1923 2399711 - 2399660 - g 70 -11.5 -3.40403 | gap 2, opp_overlap 2399665 2399677 2399679, overlap 2399631 CGCCGCGCACGACAA TCGTCTGCGCGCTCGCCCAGCGCGG CTCG CTGCACTGGGCGCACGC-CGG-CGA TTCGCGCATGTATTT Rpic_2279 2399356 - 2400270 + | protein serine/threonine phosphatase TERM 1924 2400295 - 2400327 + F 100 -22 -2.92026 | overlap 2400291 CGCAGACCCCCTCCT CCGGCCCGCCCTGC CAAGC GCAGCGCGGGCCGG TATCATGTTGGGCTA Rpic_2280 2400367 - 2401083 + | ribonuclease PH Rpic_2281 2401095 - 2401700 + | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family Rpic_2282 2401708 - 2402976 + | oxygen-independent coproporphyrinogen III oxidase TERM 1925 2403012 - 2402973 - f 77 -8.5 -4.30576 | overlap 2402974 2402977 GGCCGACGACGAAAA CTGACGGTACCCGGTGC CAAGTT GCGCCAGGTACCGTTAC AATGGCGCCCTTGCT TERM 1926 2403008 - 2402977 - f 73 -13.7 -2.78495 | overlap 2402974 2402973 GACGACGAAAACTGA CGGTACCCGGTGC CAAGTT GCGCCAGGTACCG TTACAATGGCGCCCT Rpic_2283 2403290 - 2404543 + | integrase family protein Rpic_2284 2405391 - 2404801 - | hypothetical protein Rpic_2285 2405873 - 2405391 - | protein of unknown function DUF847 Rpic_2286 2408118 - 2406175 - | hypothetical protein TERM 1927 2406751 - 2406723 - G 73 -6 -4.36914 | opp_overlap 2406697, overlap 2406700 TGGCCGCGCATAAAA TGGCATGGTGAT TGGTG ATCTCGATGCCA TCTAGCGCGCCTGTC TERM 1928 2407885 - 2407899 + g 74 -11.4 -3.65426 | overlap 2407893 2407895 2407896 CTGGTCCCAGATCGT GACGCC ATT GGCGTC TTTGACGATTTGTCG TERM 1929 2408154 - 2408137 - H 100 -9.1 -5.45802 | GCCTCAAAACAAAAA GGCCACC CGGA GGTAGCC TAAAATGAGAAAACC TERM 1930 2408184 - 2408168 - H 89 -10.8 -4.67635 | CCTAAAATGAGAAAA CCCCGC ACTTG GCGGGG TTGGAGGGTTCAATG Rpic_2287 2408197 - 2408574 + | heat shock protein DnaJ domain protein Rpic_2288 2411227 - 2408564 - | Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase Rpic_2289 2412612 - 2411224 - | hypothetical protein Rpic_2290 2413703 - 2412618 - | hypothetical protein Rpic_2291 2414166 - 2413705 - | GCN5-related N-acetyltransferase Rpic_2292 2414729 - 2414163 - | Aspartyl/Asparaginyl beta-hydroxylase Rpic_2293 2415353 - 2415021 - | hypothetical protein Rpic_2294 2415748 - 2415350 - | hypothetical protein Rpic_2295 2417184 - 2415748 - | hypothetical protein TERM 1931 2416944 - 2416920 - G 75 -14.3 -2.97747 | TTGTGAGAGCAGATA CCGCCGTCGTG ATC CACGACGACGA GACCATGTAGAGGGA Rpic_2296 2417897 - 2417181 - | hypothetical protein Rpic_2297 2418245 - 2417901 - | hypothetical protein TERM 1932 2417986 - 2417970 - G 76 -9.4 -4.18018 | TGCCGCCACCGAAAA CGACGC GCCAG GCGTCG GTACGTACAGCGGCT Rpic_2298 2418511 - 2418254 - | hypothetical protein Rpic_2299 2418834 - 2418508 - | hypothetical protein TERM 1933 2418854 - 2418871 + r 86 -14.1 -3.53012 | opp_overlap 2418854 GAGCCCCAATGAAAA GCGGCCC CGAA GGGCCGC TTTCACACGGAGAAA TERM 1934 2418871 - 2418854 - R 100 -14.1 -4.41494 | opp_overlap 2418854 GAGCCCCAATGAAAA GCGGCCC CGAA GGGCCGC TTTCACACGGAGAAA Rpic_2300 2420161 - 2418896 - | hypothetical protein Rpic_2301 2421000 - 2420167 - | hypothetical protein TERM 1935 2421074 - 2421057 - R 100 -12.7 -4.87803 | TACGGCCAAACAAAA GGCCGCT CGAA AGCGGCC CAGAAACGCAAAACC TERM 1936 2421103 - 2421088 - R 93 -11.8 -4.39571 | opp_overlap 2421088, overlap 2421082 CCCAGAAACGCAAAA CCCCGC CGAA GCGGGG TCTTGGAATGAAGGG Rpic_2302 2422437 - 2421130 - | hypothetical protein TERM 1937 2422482 - 2422468 - R 100 -11.4 -5.42514 | opp_overlap 2422468, overlap 2422435 TCAGAAACGAAAAAA CCGCCT CGC AGGCGG TTGAATGGGTAAAAA TERM 1938 2422521 - 2422499 - R 100 -10.5 -5.055 | opp_overlap 2422499 2422504, overlap 2422502 TGAATGGGTAAAAAA GAAGGCCGC TCTAG GCGGCCTGC GGTGGTGCTTCTGGT TERM 1939 2422518 - 2422502 - R 89 -10.8 -4.62085 | opp_overlap 2422499 2422504, overlap 2422499 ATGGGTAAAAAAGAA GGCCGC TCTAG GCGGCC TGCGGTGGTGCTTCT Rpic_2303 2424638 - 2422509 - | hypothetical protein TERM 1940 2422731 - 2422743 + g 88 -9.1 -4.6902 | overlap 2422739 GGCCTTGATCATGTT CGAGC CCC GCTCG TTTTTGAGCTTCTCG Rpic_2304 2424799 - 2424638 - | hypothetical protein Rpic_2305 2426277 - 2424802 - | phage uncharacterized protein, putative Rpic_2306 2426689 - 2426246 - | hypothetical protein TERM 1941 2426584 - 2426598 + gr 71 -7.8 -4.11394 | CCATCACATCAAGCG GCGTGA CCT TCGCGC TTTTCAAAATGCGCT Rpic_2307 2427324 - 2426872 - | hypothetical protein Rpic_2308 2428008 - 2427385 - | hypothetical protein Rpic_2309 2428280 - 2428008 - | hypothetical protein Rpic_2310 2428459 - 2428280 - | hypothetical protein Rpic_2311 2428783 - 2428493 - | hypothetical protein TERM 1942 2428838 - 2428801 - R 95 -11.2 -4.67353 | overlap 2428806 GTATGCACCTAAAAA TGAAACGCCCCACCGG GGTGAG CCGGCGGGGCGTCAAA GGCTGGGGTACCCAG TERM 1943 2428833 - 2428806 - R 100 -17.7 -4.33653 | overlap 2428801 CACCTAAAAATGAAA CGCCCCACCGG GGTGAG CCGGCGGGGCG TCAAAGGCTGGGGTA Rpic_2312 2429525 - 2429112 - | hypothetical protein TERM 1944 2429259 - 2429233 - G 72 -8.6 -4.03413 | AGGCGGTCATAGAAA GTGCGCTCCCCA ATA TCGAGAGCGCGC CAGATCGCCTTGACT Rpic_2313 2429726 - 2429526 - | hypothetical protein Rpic_2314 2429995 - 2429723 - | hypothetical protein Rpic_2315 2430789 - 2429992 - | hypothetical protein Rpic_2316 2431073 - 2430786 - | hypothetical protein Rpic_2317 2431495 - 2431070 - | hypothetical protein Rpic_2318 2431803 - 2431492 - | hypothetical protein Rpic_2319 2432168 - 2431809 - | hypothetical protein Rpic_2320 2432473 - 2432165 - | hypothetical protein Rpic_2321 2432882 - 2432550 - | hypothetical protein Rpic_2322 2433070 - 2432870 - | hypothetical protein Rpic_2323 2433661 - 2433080 - | hypothetical protein Rpic_2324 2434161 - 2433685 - | endodeoxyribonuclease RusA Rpic_2325 2435563 - 2434169 - | DnaB domain protein helicase domain protein TERM 1945 2435455 - 2435474 + g 71 -12.2 -3.28712 | opp_overlap 2435451, overlap 2435458 CCGGCTCAAGACCGC CAACGCGA TCGA TCGCGTTG TTGTCGAGCAGGAGG Rpic_2326 2436465 - 2435560 - | hypothetical protein Rpic_2327 2436626 - 2436465 - | hypothetical protein Rpic_2328 2436799 - 2436623 - | hypothetical protein Rpic_2329 2437200 - 2436796 - | hypothetical protein TERM 1946 2437150 - 2437188 + g 93 -6.6 -5.16151 | opp_overlap 2437173, overlap 2437152 2437163 CCCTGCAGCGCGGAT CACTTCAGCCAGAGCGTC ATA GACGCTCTCGTAGAACAG TTTTTCTTGCATTTC TERM 1947 2437279 - 2437260 - H 95 -7.2 -5.40072 | overlap 2437262 TCTGGGCCAAAAAAA TAGGATGA AGGC TCATCCCA CCGCATCAGACGCTC TERM 1948 2437277 - 2437262 - H 77 -7.6 -4.34482 | overlap 2437260 TGGGCCAAAAAAATA GGATGA AGGC TCATCC CACCGCATCAGACGC Rpic_2330 2437459 - 2438367 + | putative phage repressor Rpic_2331 2438375 - 2438656 + | hypothetical protein Rpic_2332 2438665 - 2438955 + | hypothetical protein TERM 1949 2438982 - 2438998 + F 78 -5 -4.77036 | overlap 2438984 TCAACCGCATGAGCA GGCCGC CTTGA GCGGGC TTTTTGCTACTGCCC Rpic_2333 2439140 - 2439388 + | hypothetical protein Rpic_2334 2439401 - 2439724 + | hypothetical protein Rpic_2335 2439735 - 2439968 + | hypothetical protein Rpic_2336 2440096 - 2440479 + | hypothetical protein TERM 1950 2440469 - 2440480 + F 78 -3 -5.10933 | GCAGATTGCCCTTCA TTCA TTCA TGAA TTTTGTTTTGCGTGG Rpic_2337 2440847 - 2442232 + | conserved hypothetical protein; putative ribonucleoprotein-related protein Rpic_2338 2442234 - 2442560 + | hypothetical protein Rpic_2339 2442562 - 2443047 + | HNH endonuclease Rpic_2340 2443050 - 2443427 + | hypothetical protein Rpic_2341 2443444 - 2443689 + | hypothetical protein Rpic_2342 2443689 - 2443874 + | hypothetical protein Rpic_2343 2443901 - 2444179 + | hypothetical protein TERM 1951 2444420 - 2444389 - g 72 -7.2 -4.29977 | AAAGAAGCCAAGAAA GCCTTCGACGCTGC ATTC GCAGCCTTCAAGGC TGAAGCGGTCAAGAT Rpic_2344 2444176 - 2445006 + | ERF family protein Rpic_2345 2445037 - 2446668 + | hypothetical protein Rpic_2346 2446723 - 2447226 + | hypothetical protein Rpic_2347 2447357 - 2447965 + | hypothetical protein Rpic_2348 2448019 - 2448609 + | hypothetical protein Rpic_2349 2448619 - 2448990 + | hypothetical protein Rpic_2350 2449191 - 2450372 + | Retron-type reverse transcriptase Rpic_2351 2450369 - 2450743 + | hypothetical protein TERM 1952 2452092 - 2452062 - g 70 -11 -3.40403 | TGCGTGCCACGACAA CGGGCGCTGGTCCG TAG CGGACCACCGACTG CCAGCGGCCAACGAC Rpic_2352 2450740 - 2452419 + | C-5 cytosine-specific DNA methylase TERM 1953 2452471 - 2452506 + G 74 -12.7 -3.28712 | gap 1, opp_overlap 2452469 AGCTCGCAGAGCAGT TCGGGTTCGACGTGGC CGACA GCGACGTC-AACCCGA TTCTGAAGCCGCACC TERM 1954 2453360 - 2453342 - g 71 -12.4 -3.28712 | GGCGGCGCGCGAGAA GCGCGACA GCC TGCCGCGC CGCATCGAGAAGATG TERM 1955 2454866 - 2454849 - g 77 -8.4 -4.25104 | overlap 2454857 2454858 CGCGCCCTACTAAAA GGCCAC AAGGCA GTGGCC TGCGAACTTTCGACA Rpic_2353 2452416 - 2454980 + | DNA methylase N-4/N-6 domain protein Rpic_2354 2454977 - 2455327 + | hypothetical protein Rpic_2355 2455324 - 2455548 + | hypothetical protein Rpic_2356 2455749 - 2455997 + | hypothetical protein TERM 1956 2456516 - 2456503 - g 79 -3.7 -4.8622 | GCTGCGAACGAAAAA GCTGC GATC GCCGC CCCCACGCAGCAGCA Rpic_2357 2455987 - 2456547 + | hypothetical protein Rpic_2358 2456768 - 2457157 + | hypothetical protein TERM 1957 2457313 - 2457295 - g 71 -12.4 -3.21416 | GAGGTGCATCAGGAA CTCGCACC GCT GGCGCGAG AACTGGAGCGCGAGA Rpic_2359 2457154 - 2457384 + | hypothetical protein Rpic_2360 2457389 - 2457637 + | hypothetical protein Rpic_2361 2457630 - 2457869 + | hypothetical protein Rpic_2362 2457924 - 2458154 + | phage transcriptional regulator, AlpA Rpic_2363 2458665 - 2458802 + | hypothetical protein TERM 1958 2459094 - 2459073 - f 83 -5.1 -5.09426 | overlap 2459058 2459075 GCCAACTCGAAAAAA CAGGGTGAA TCCG CTCACCCCA TTCCTCCGAAGCTGA TERM 1959 2459092 - 2459075 - f 75 -7.7 -4.17355 | overlap 2459073 2459058 CAACTCGAAAAAACA GGGTGAA TCCG CTCACCC CATTCCTCCGAAGCT TERM 1960 2459148 - 2459193 + F 91 -4.6 -5.45652 | gap 2, opp_overlap 2459177, overlap 2459153 CCTGCTGTTTTCCCC GTTGCTCGCCCTGCGTCGGCTC CATG GAACCG-CGC-GGGCGCTGAAC TTTTTTATTAGGCGT TERM 1961 2459318 - 2459286 - f 88 -14.1 -3.67112 | ATTAGAGGGTAAGAA CGTGCCGGCACGC CGTTCAC GCGAGCCAGCACG CGGGCAATGGGGCAA Rpic_2364 2459456 - 2460040 + | transcriptional regulator, LuxR family TERM 1962 2460175 - 2460188 + F 100 -9.5 -5.40474 | opp_overlap 2460166 GATACAGGCGGGTAA CCGCC GGCC GGCGG TTTTTTTACGCCCGT Rpic_2365 2460355 - 2460762 + | hypothetical protein TERM 1963 2461297 - 2461282 - g 70 -4.7 -4.38712 | CGCAGCGCCAGAAAA TGCTG ACTGAA CAGCA GACCATGCGTCAGGA Rpic_2366 2460798 - 2461430 + | putative signal peptide protein Rpic_2367 2461818 - 2462351 + | hypothetical protein Rpic_2368 2463024 - 2462377 - | pyrrolidone-carboxylate peptidase TERM 1964 2462630 - 2462589 - G 76 -6 -4.54047 | gap 3 TCAGCCCATAGAAAA CGT-GGT-T-GCAGACGAAGG TAC CCGCCGTCTGCGAGACCGACG CAGGAACGCCACCCG Rpic_2369 2464098 - 2463103 - | TRAP dicarboxylate transporter- DctP subunit TERM 1965 2464109 - 2464084 - G 100 -9 -5.84432 | gap 1 GAGAACACAAAAAAA GCGG-CGTCCC GACAT GGAACGGCCGC TCGTCATCTGGCTGC Rpic_2370 2465226 - 2464270 - | protein of unknown function DUF979 Rpic_2371 2465967 - 2465230 - | protein of unknown function DUF969 TERM 1966 2465892 - 2465855 - G 85 -11.9 -4.09864 | opp_overlap 2465854 ATCGATGCCGCAAAA CCGGTGGCGATGGCGGC CACG GCCACCACCAGCATCGG ATTGAATCGCAGGAT TERM 1967 2466016 - 2465996 - R 88 -7.5 -4.87786 | overlap 2466011 CCAAGTTGATAAAAA GCCCCGC TGGAAGG ACGGGGC CGTGGCTCAGGCGCC Rpic_2372 2466766 - 2466023 - | LamB/YcsF family protein Rpic_2373 2467835 - 2466786 - | urea amidolyase related protein TERM 1968 2467104 - 2467116 + g 77 -4.7 -4.67234 | overlap 2467054 2467110 GTGCGAGAGCAGATC GCCGC TGC GCTGC TTTTTGCGCTTGAGT Rpic_2374 2468479 - 2467832 - | Allophanate hydrolase subunit 1 Rpic_2375 2469939 - 2468755 - | drug resistance transporter, Bcr/CflA subfamily TERM 1969 2469066 - 2469041 - G 79 -10.3 -4.08767 | overlap 2469042 GGCAGCGGCGTAAAA CCGGCCGCGGC GGCA GCGGCAGCCAG CACGCTGGTGATGGC TERM 1970 2470873 - 2470901 + G 75 -13.8 -2.93073 | opp_overlap 2470869, overlap 2470869 GCGCGTGGAAATCGT GCGGGCGCTGCT CACCA AGCCGCGCCTGC TGATTCTTGACGAAC Rpic_2376 2470457 - 2471971 + | ABC transporter related Rpic_2377 2471964 - 2473073 + | inner-membrane translocator TERM 1971 2473352 - 2473375 + G 71 -7.4 -4.07568 | gap 1 TCGTCACCAACCAGG TCGCCACGGGC CTC GCCC-TGTCGA TTTTCGGCACCGGCC TERM 1972 2473868 - 2473899 + G 86 -15.2 -3.53224 | gap 1 AAGGGATGGGCGTGT CGGTGCCGTCG-CAG ATT CTGTCGATGGCGCCG TTTGCCGCCACCATC Rpic_2378 2473087 - 2474007 + | inner-membrane translocator Rpic_2379 2474087 - 2475244 + | basic membrane lipoprotein TERM 1973 2475266 - 2475290 + F 100 -10 -5.14563 | gap 1, opp_overlap 2475266 CCCGTCTCGGCAAAA GCCGGCGTCTC GCGA GAGG-GCCGGC TTTTTTCATGGACGA TERM 1974 2475290 - 2475266 - f 71 -7.8 -4.07568 | gap 1, opp_overlap 2475266 CCCGTCTCGGCAAAA GCCGGCGTCTC GCGA GAGG-GCCGGC TTTTTTCATGGACGA Rpic_2380 2475408 - 2475704 + | protein of unknown function DUF1232 Rpic_2381 2476694 - 2475714 - | Alcohol dehydrogenase zinc-binding domain protein TERM 1975 2475761 - 2475780 + g 77 -12.8 -3.31792 | TGCGCGCTTCCAGAT CGCGGTGC GCCT GCGCCGCG TTCTGCAGATCGTAG Rpic_2382 2477131 - 2476691 - | methylglyoxal synthase Rpic_2383 2477933 - 2477142 - | short-chain dehydrogenase/reductase SDR Rpic_2384 2478893 - 2477976 - | protein of unknown function DUF6 transmembrane Rpic_2385 2479078 - 2480556 + | NCS1 nucleoside transporter family TERM 1976 2481246 - 2481212 - g 77 -8.4 -4.26076 | opp_overlap 2481239 GCACCTGGATGAAAA CGCCTACATCATCCCG GGC CTGGGCGATGCGGGCG ACCGCCTGTTCGGCA Rpic_2386 2480622 - 2481272 + | uracil phosphoribosyltransferase TERM 1977 2481317 - 2481299 - T 100 -16 -5.28942 | opp_overlap 2481299 CAGCGCAAACAAAAA CAGCCGGC AAT GCCGGCTG TTGTCTTTGGTACGT TERM 1978 2481299 - 2481317 + T 95 -16 -3.86653 | opp_overlap 2481299 CAGCGCAAACAAAAA CAGCCGGC AAT GCCGGCTG TTGTCTTTGGTACGT Rpic_2387 2482904 - 2481342 - | protein of unknown function DUF853 NPT hydrolase putative TERM 1979 2483771 - 2483734 - g 70 -11.1 -3.42503 | overlap 2483727 2483735 2483755 GGTCAAGATGCAGAA GCTGCTCGACGTCCTGG AAAA CCTGGACGACGTGCAGG AAGTCTTCACCAACG TERM 1980 2483770 - 2483735 - g 74 -14.6 -2.6518 | overlap 2483727 2483734 2483755 GTCAAGATGCAGAAG CTGCTCGACGTCCTGG AAAA CCTGGACGACGTGCAG GAAGTCTTCACCAAC Rpic_2388 2483078 - 2483803 + | protein of unknown function DUF28 TERM 1981 2483823 - 2483846 + F 100 -13.9 -5.45802 | opp_overlap 2483823 CGGACACGCGCATAA CGGCGATCG ACCTCA CGATCGCCG TTTTTGTTTTCCAGA TERM 1982 2483846 - 2483823 - f 81 -13.9 -3.32343 | opp_overlap 2483823 CGGACACGCGCATAA CGGCGATCG ACCTCA CGATCGCCG TTTTTGTTTTCCAGA Rpic_2389 2483899 - 2485167 + | phosphoribosylamine/glycine ligase TERM 1983 2485485 - 2485431 - g 73 -11.9 -3.33492 | gap 1, opp_overlap 2485477 2485481 2485482 CGACGCATGGGAGAA GCCGCCCACC-GAGCGCCTGCGCGGC AGCG GCCGCACCCGCATCCTGGAAGGCGGC GCGCTGCTCGAGCGC TERM 1984 2485481 - 2485511 + G 74 -4.6 -4.58663 | gap 1, opp_overlap 2485431, overlap 2485477 2485482 CCCGCATCCTGGAAG GCGGCGC-GCTGC TCGAGC GCGGCGGCGTCGG TTTTTCGCACGTGAT Rpic_2390 2485324 - 2486232 + | Coproporphyrinogen oxidase Rpic_2391 2486229 - 2486939 + | nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 1985 2486940 - 2486965 + F 84 -3.1 -5.16472 | overlap 2486924 2486941 ACGGTCAGTGCCTGA CCGCGTGATTG ACCA CCTTCACGCGC TTTTTTGACCTTTTT Rpic_2392 2487011 - 2487628 + | iojap-like protein TERM 1986 2487784 - 2487766 - g 86 -16 -3.25942 | overlap 2487752 ACTGCGCGAGATCAA GCCCGAGC AAC GCTCGGGC AGCCGCACCGCCGCC Rpic_2393 2487650 - 2488120 + | protein of unknown function DUF163 TERM 1987 2488206 - 2488166 - g 72 -11 -3.53091 | gap 1 ATCTCGCCTCGCAAA GCCCGCGCCGA-CAGGAAC TGCT GCGCCAGATCGGCGCGCGC TTCGCGCTGCTGCTC TERM 1988 2488522 - 2488545 + G 74 -11 -3.62096 | gap 1, opp_overlap 2488470, overlap 2488470 2488502 2488521 GGCACGCCGATGCAC GCGC-TGTCCG TTT CGGACGTGCGC TTTGCCGTGCTGACG Rpic_2394 2488117 - 2488740 + | maf protein TERM 1989 2489521 - 2489542 + G 74 -10.1 -3.72576 | overlap 2489525 ACCAGGACCTGAACC TCGCCCAGC GCGT GCTGCGCGA TTTCGTGACGGACGA TERM 1990 2490268 - 2490247 - g 75 -6.5 -4.44667 | opp_overlap 2490252, overlap 2490248 TCCTGGAAGAAGAAA GCCAGCACC TTGC GATGCTGGG GGATTTCATCGGCAA Rpic_2395 2488881 - 2490350 + | ribonuclease, Rne/Rng family Rpic_2396 2490976 - 2490377 - | uncharacterized peroxidase-related enzyme Rpic_2397 2492752 - 2491028 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA Rpic_2398 2492985 - 2493767 + | glycosyl transferase family 25 Rpic_2399 2494625 - 2493783 - | glycosyl transferase family 2 TERM 1991 2493955 - 2493934 - G 79 -6.5 -4.56597 | gap 1, opp_overlap 2493943 TCGGTCGCGCAAAAA CCGCGCTTGC GCC GCACGC-CGG CGTTATAAAGGCGAA Rpic_2400 2495385 - 2494612 - | glycosyl transferase family 2 Rpic_2401 2496678 - 2495398 - | O-antigen polymerase Rpic_2402 2497742 - 2496675 - | glycosyl transferase group 1 TERM 1992 2497371 - 2497401 + g 81 -3.1 -5.0133 | overlap 2497359 2497372 GTCTCGGCGCTCCAG CGCGATCTGCTGG CGATC CCAGAAGGCCGCC TTTTTTGAAAAGCTC Rpic_2403 2501344 - 2497826 - | DNA polymerase III, alpha subunit TERM 1993 2499142 - 2499180 + g 79 -10.2 -4.18702 | gap 1, opp_overlap 2499163, overlap 2499176 TGGAGAGCCCGTCCT TGGCTGCGC-CCGCACG GAACAG CGCGCGGTGCTCGGCCA TTTCTTCGGCCTTCT TERM 1994 2501640 - 2501694 + G 77 -8.6 -4.26903 | gap 3, overlap 2501638 TCAACATCTTCCTGG CCGGC-TC-GCGCGAGGCCA-TTGACG GCAT CGTCGGCTGGCTGCGCGCCGACGCCCG TTTTGCTGACCTCGC Rpic_2404 2501480 - 2502343 + | Rhodanese domain protein TERM 1995 2502486 - 2502514 + T 74 -11.8 -3.55563 | opp_overlap 2502492, overlap 2502492 CATTGCGTGCCAGCA AAAAAACGCCGG ACATG CCGGCGTTTTTC TTTGAGCGATCCGGT TERM 1996 2502508 - 2502492 - T 100 -10.8 -5.52384 | opp_overlap 2502486 2502492 GTGCCAGCAAAAAAA CGCCGG ACATG CCGGCG TTTTTCTTTGAGCGA TERM 1997 2502492 - 2502508 + T 100 -10.8 -5.27335 | opp_overlap 2502492, overlap 2502486 GTGCCAGCAAAAAAA CGCCGG ACATG CCGGCG TTTTTCTTTGAGCGA Rpic_2405 2503102 - 2502530 - | putative TRP repressor binding protein-like protein TERM 1998 2503174 - 2503154 - R 100 -9.7 -5.49568 | overlap 2503165 AACGGAAAAGAAAAA TGGCGCACA CAG CGTGCACCA CGAACATTACGGCAG Rpic_2406 2503879 - 2503181 - | Pirin domain protein Rpic_2407 2503986 - 2504888 + | transcriptional regulator, LysR family TERM 1999 2504997 - 2505016 + G 71 -10.7 -3.56643 | opp_overlap 2504985 CCACCACGTCGTCGC GCGGCCA ATACCG TGGCCGC TTTGCGCCCTCTCCC Rpic_2408 2504951 - 2505895 + | Glutamate--tRNA ligase TERM 2000 2505899 - 2505918 + T 95 -12.1 -4.1899 | CGGTGCGATTGACCC CGGCGGC TGGAGC GCCGCCG TTTTCAGTCGACTGA Rpic_2409 2507416 - 2505935 - | DEAD/DEAH box helicase domain protein TERM 2001 2506246 - 2506277 + g 70 -5.8 -4.2349 | gap 1, opp_overlap 2506242 2506240 GATCGAAATCAGCCA GCTGCTCGCGCGGCA GGT TGC-GCTTGATCAGC TTTTCGATGTCGGCC TERM 2002 2506630 - 2506679 + g 87 -14.9 -3.56325 | gap 1, opp_overlap 2506618 2506615 2506613 CGATGCACTGGCGCG GCAGGCCTTGCTCCGCGCGCTGGC GCA GCAGGTGCAC-GAGCGCGGCCTGC TTGTGGTTGTCCGGC TERM 2003 2507235 - 2507220 - G 75 -10.4 -3.92075 | opp_overlap 2507215 2507220 ATCGGCAGCGAGAAA CCGGCA GTCT TGCCGG TGCCGGTTTGCGCGG Rpic_2410 2507446 - 2508486 + | beta-lactamase domain protein Rpic_2411 2509180 - 2508470 - | transcriptional regulator, TetR family TERM 2004 2509077 - 2509045 - G 71 -12 -3.28924 | opp_overlap 2509046 CAGCCGTGTCGAGAA TCTGCCG-GCGGCGGG CCT CCTGCCGCTCGGC-GA TGTGGGGGCGCGTGG TERM 2005 2509046 - 2509099 + g 77 -15.1 -2.82516 | gap 1, opp_overlap 2509045 AGCCGTGTCGAGAAT CTGCCGGCGGCGGGCCTCC-TGCCGC TCG GCGATGTGGGGGCGCGTGGCCGGCGG TGTGATGCTGGGGGC Rpic_2412 2509382 - 2511085 + | AMP-dependent synthetase and ligase Rpic_2413 2511100 - 2514411 + | Carbamoyl-phosphate synthase L chain ATP-binding Rpic_2414 2514437 - 2515714 + | extracellular ligand-binding receptor Rpic_2415 2516741 - 2515731 - | beta-lactamase domain protein TERM 2006 2516781 - 2516762 - H 73 -10.7 -3.63744 | overlap 2516760 GGCTCCTGGAAAAGA CCGCTGC CCCGGT GCAGCGG CGAAAGCCGGATCAT TERM 2007 2516900 - 2516876 - H 74 -6.4 -4.30995 | gap 1, opp_overlap 2516877, overlap 2516873 2516879 CCCCGCAGAAAAGAA CA-AGGCCCGA CATG CCGGGCCCATG CTTCAGACCAATCGA TERM 2008 2516896 - 2516879 - H 84 -10.5 -4.26938 | opp_overlap 2516877, overlap 2516876 2516873 CGCAGAAAAGAACAA GGCCCGA CATG CCGGGCC CATGCTTCAGACCAA Rpic_2416 2517176 - 2517346 + | hypothetical protein Rpic_2417 2518381 - 2517557 - | OmpW family protein Rpic_2418 2519715 - 2518456 - | putative lipoprotein Rpic_2419 2521397 - 2519802 - | hypothetical protein TERM 2009 2521524 - 2521485 - R 70 -10.7 -3.53012 | gap 1, overlap 2521467 2521490 CCGCCTGTCGGCAAA CGA-CAGCCGACAGCGCA CGACC TGCCCCGTCGGCAGATCG ACTTGCAAACATCAA TERM 2010 2521518 - 2521490 - R 72 -12.4 -3.00525 | overlap 2521467 2521485 TGTCGGCAAACGACA GCCGACAGCGCA CGACC TGCCCCGTCGGC AGATCGACTTGCAAA TERM 2011 2522273 - 2522249 - R 100 -7.1 -5.77632 | gap 1, opp_overlap 2522271, overlap 2522251 AAAACGAGAAAAAAA GAGACCCGGC GCTTAG GCCGGGCC-C GATGCAGGATTTTAC TERM 2012 2522272 - 2522251 - R 89 -10.8 -4.48967 | opp_overlap 2522271, overlap 2522249 AACGAGAAAAAAAGA GACCCGGC GCTTAG GCCGGGCC CGATGCAGGATTTTA TERM 2013 2522310 - 2522295 - R 73 -10.4 -3.60627 | GGATTTTACCTGAAA GTGGGC GCGA GCCCAC TCGGAAAATCGCCTG Rpic_2420 2524828 - 2522339 - | RNA polymerase, sigma 70 subunit, RpoD TERM 2014 2524220 - 2524255 + g 86 -6.9 -4.87893 | gap 1, overlap 2524223 CTCTTCTTCCGAACC GCCTTGCTGCGAGGCA GCGAA TTCCTTG-AGCAGGGC TTTTTCCTTGGCCTT TERM 2015 2525017 - 2525005 - R 74 -4.1 -4.7657 | CAAAAATGGGAAAAA GGACT TGC AATCC AAACCGGCTATTCTA Rpic_2421 2526953 - 2525142 - | DNA primase TERM 2016 2525208 - 2525222 + g 74 -12.8 -3.19026 | CTCCTTGTCGTCGTC GCCGGC ATG GCCGGC TTCCATCTTGCGCTG TERM 2017 2525578 - 2525601 + g 72 -6.6 -4.21194 | gap 1 TCAAGCGCCGTAGGT GCGGTGCGCGC CAC GCGGG-GCCGC TTTTGCGTCATGCGG Rpic_2422 2527452 - 2526994 - | hypothetical protein TERM 2018 2527364 - 2527385 + g 75 -10.2 -3.90112 | opp_overlap 2527364 GCAGCCTGCAACAGA CGGATCGT GCCCAG ACGATCCG TTTCCTTGGCGCGCA TERM 2019 2527502 - 2527477 - R 84 -10.3 -4.26189 | CGATAAACGGCAAAA CCCGCTTGGAC GGTG GGCCCAGCGGG TTGCAAACTTTGAAA Rpic_2423 2528799 - 2527576 - | HI0933 family protein TERM 2020 2529601 - 2529623 + G 73 -9.1 -3.87373 | gap 1, overlap 2529600 2529621 AGACCTGTTATCAGC CGCGCGC-CG ATCT TGCGCGCGCG TTTGTCGACGCTATC TERM 2021 2529776 - 2529764 - g 79 -6.2 -4.62069 | opp_overlap 2529765, overlap 2529765 CGCCGAGGGCAAAAA GCGC GGCTT GCGC GTCTACTACCCCGAC Rpic_2424 2528895 - 2529938 + | metalloendopeptidase, glycoprotease family TERM 2022 2529945 - 2529962 + T 100 -12.7 -5.06414 | opp_overlap 2529945 CACGCATGAAAAAAA GCCGCTC GATT GAGCGGC TTTTTCTTGGGGCAC TERM 2023 2529962 - 2529945 - T 100 -12.7 -5.53991 | opp_overlap 2529945 CACGCATGAAAAAAA GCCGCTC GATT GAGCGGC TTTTTCTTGGGGCAC Rpic_2425 2530791 - 2529985 - | protein of unknown function DUF198 Rpic_2426 2532951 - 2531041 - | deoxyxylulose-5-phosphate synthase Rpic_2427 2533919 - 2533008 - | Polyprenyl synthetase Rpic_2428 2534200 - 2533916 - | exodeoxyribonuclease VII, small subunit Rpic_2429 2534615 - 2535712 + | Rieske (2Fe-2S) domain protein TERM 2024 2535760 - 2535785 + F 100 -16.1 -5.75945 | opp_overlap 2535760 GCGTCACAATAGGAA CGGTGCAGCCC CCAC GGGCCGCACCG TTTTTTTTCGCCCCT TERM 2025 2535785 - 2535760 - f 100 -18.3 -3.41745 | opp_overlap 2535760 GCGTCACAATAGGAA CGGTGCAGCCC CCAC GGGCCGCACCG TTTTTTTTCGCCCCT TERM 2026 2536403 - 2536413 + G 82 -6.8 -4.68645 | opp_overlap 2536398, overlap 2536398 TGGGCGAGAACGAGG CACG CAT CGTG TTTTACTTTTCCCTG Rpic_2430 2535811 - 2536800 + | protein of unknown function DUF6 transmembrane Rpic_2431 2536822 - 2537709 + | Rhodanese domain protein TERM 2027 2537753 - 2537736 - T 85 -9.1 -4.72272 | opp_overlap 2537736 GGCGCGCAGCAAAAA GCCCGAT ATCG ACCGGGC TTTTTCTTGAAGCCG TERM 2028 2537736 - 2537753 + T 89 -6.9 -5.06414 | opp_overlap 2537736 GGCGCGCAGCAAAAA GCCCGAT ATCG ACCGGGC TTTTTCTTGAAGCCG Rpic_2432 2538585 - 2537779 - | zinc/iron permease TERM 2029 2538629 - 2538615 - R 71 -6.4 -4.20516 | overlap 2538616 GCGGGAGCCAATAAA CGCAAC AGA GTTGCA AGAAGGGCGGATTGT TERM 2030 2538710 - 2538686 - R 100 -12.8 -5.10933 | opp_overlap 2538686 GCAGGCAAAAGAAAA GGCCCCGGGG CGACT CCCCAGAGCC TTTCGCGTTCGGCGC Rpic_2433 2539613 - 2538735 - | Carboxymethylenebutenolidase Rpic_2434 2541056 - 2539722 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rpic_2435 2544077 - 2541264 - | DNA polymerase I Rpic_2436 2544082 - 2545035 + | hypothetical protein TERM 2031 2545183 - 2545223 + G 80 -8.2 -4.42386 | overlap 2545186 CGGCTTTGCCAATGC CGCGCGCCTGAT-GCGGCAC GCT GGGCTGCTGGCAGGCGC-CG TTTTCTGCCTCGCCC Rpic_2437 2545130 - 2545558 + | putative transmembrane protein Rpic_2438 2545643 - 2546647 + | homoserine kinase Rpic_2439 2546638 - 2547435 + | putative transmembrane protein Rpic_2440 2549820 - 2547460 - | UvrD/REP helicase TERM 2032 2548705 - 2548669 - G 84 -8.8 -4.58395 | overlap 2548670 2548671 CGCACGCTCGAAAAA GCGCAGGC-CGCCGTACA CCT TGTACGGGATGCCTGC-C GAGAACAGCGCGTGT Rpic_2441 2549971 - 2552847 + | valyl-tRNA synthetase Rpic_2442 2552881 - 2553753 + | UTP-glucose-1-phosphate uridylyltransferase TERM 2033 2553783 - 2553807 + T 100 -13.6 -5.4505 | gap 1, opp_overlap 2553783 ACGCCATGGAAAAAA CCCGCG-CAGC ATGA GCTGACGCGGG TTTTTTGTTGCCGGA TERM 2034 2553807 - 2553783 - T 100 -13.6 -5.09225 | gap 1, opp_overlap 2553783 ACGCCATGGAAAAAA CCCGCG-CAGC ATGA GCTGACGCGGG TTTTTTGTTGCCGGA TERM 2035 2553865 - 2553884 + T 73 -10 -3.62046 | opp_overlap 2553868, overlap 2553868 CCTACCCTTTTGCAA GGAGAGGC TGCA GCCTCTTC TTATTGCGGAGCTGC Rpic_2443 2554841 - 2553885 - | putative transmembrane protein TERM 2036 2554847 - 2554828 - G 74 -10.7 -3.78022 | opp_overlap 2554842 2554844 2554846 GTCAGACCCACCAAA GCGCGCA GGCTCA TGCGCGC CGCCCTCTGTGCTGC TERM 2037 2554846 - 2554862 + r 85 -3.5 -5.37593 | opp_overlap 2554828, overlap 2554842 2554844 CGCAGGCTCATGCGC GCCGCCC TCT GTGCTGC TTTTTTGGTTTCCAA TERM 2038 2555303 - 2555281 - R 100 -10.5 -5.97979 | opp_overlap 2555281 ACAATAATAAAAAAA CCGCGGGTC GAGCA GACACGCGG TTTCTTCGAAACGCC TERM 2039 2555281 - 2555303 + r 84 -10.5 -4.15044 | opp_overlap 2555281 ACAATAATAAAAAAA CCGCGGGTC GAGCA GACACGCGG TTTCTTCGAAACGCC TERM 2040 2555331 - 2555315 - R 70 -10.1 -3.53012 | opp_overlap 2555315 GCGGTTTCTTCGAAA CGCCCAC GGG GTGGACG TCTTGGCGGCACAGC TERM 2041 2555338 - 2555348 + r 93 -8.2 -4.93365 | GGGTGGACGTCTTGG CGGC ACA GCCG TTTTTACTTGTGCCG Rpic_2444 2555570 - 2555352 - | translation initiation factor IF-1 TERM 2042 2555762 - 2555725 - R 72 -12.7 -3.06183 | gap 1, opp_overlap 2555732 2555732, overlap 2555731 2555732 CCGAGCTGCACGGAA CACAAATC-GCGCCCGCC AAT GGCGCGCGCCGTTTCGTG CAAGCGAGAGCGAGG TERM 2043 2555755 - 2555731 - R 71 -6.9 -4.21607 | opp_overlap 2555732 2555732, overlap 2555725 2555732 TGCACGGAACACAAA TCGCGCCCGCC AAT GGCGCGCGCCG TTTCGTGCAAGCGAG TERM 2044 2555732 - 2555755 + r 76 -10.2 -3.72576 | gap 1, opp_overlap 2555731 2555725 2555732, overlap 2555732 GCACGGAACACAAAT C-GCGCCCGCC AAT GGCGCGCGCCG TTTCGTGCAAGCGAG Rpic_2445 2556211 - 2555918 - | hypothetical protein Rpic_2446 2556517 - 2557626 + | TM1410 hypothetical-related protein Rpic_2447 2558830 - 2557604 - | 4-hydroxybenzoate 3-monooxygenase TERM 2045 2557788 - 2557776 - G 71 -7.7 -4.07568 | GTGTGGTCGTCAAAA CGATG CAG CATCG ACGTCATCCACCACG Rpic_2448 2558950 - 2559927 + | transcriptional regulator, LysR family Rpic_2449 2560065 - 2561231 + | Extracellular ligand-binding receptor Rpic_2450 2561936 - 2561235 - | ABC transporter related Rpic_2451 2562702 - 2561929 - | ABC transporter related Rpic_2452 2563733 - 2562699 - | inner-membrane translocator Rpic_2453 2564599 - 2563730 - | inner-membrane translocator Rpic_2454 2565078 - 2564680 - | 4-carboxymuconolactone decarboxylase Rpic_2455 2565883 - 2565071 - | 3-oxoadipate enol-lactonase Rpic_2456 2567267 - 2565906 - | 3-carboxy-cis,cis-muconate cycloisomerase Rpic_2457 2568477 - 2567275 - | beta-ketoadipyl CoA thiolase Rpic_2458 2569162 - 2568500 - | 3-oxoacid CoA-transferase, B subunit Rpic_2459 2569854 - 2569159 - | 3-oxoacid CoA-transferase, A subunit TERM 2046 2569505 - 2569493 - G 93 -4.7 -5.24129 | overlap 2569495 GTCGGGCAGAAAAAA CCGCC AAT GCCGG CACCTGCGGCGCGGA Rpic_2460 2570182 - 2570973 + | transcriptional regulator, IclR family Rpic_2461 2571063 - 2571641 + | putative signal peptide protein Rpic_2462 2571998 - 2572843 + | extracellular solute-binding protein family 3 Rpic_2463 2572892 - 2573587 + | polar amino acid ABC transporter, inner membrane subunit Rpic_2464 2573590 - 2574282 + | polar amino acid ABC transporter, inner membrane subunit Rpic_2465 2574279 - 2575028 + | ABC transporter related TERM 2047 2575050 - 2575076 + T 100 -11.6 -5.14563 | opp_overlap 2575054, overlap 2575054 AGGCAGCAGGCAAAA AAAACGGGGGAT TCA GTCCCCCGTTTG TTTTTTGATGCGCGG TERM 2048 2575054 - 2575072 + T 100 -12.4 -5.0917 | opp_overlap 2575054, overlap 2575050 AGCAGGCAAAAAAAA CGGGGGAT TCA GTCCCCCG TTTGTTTTTTGATGC TERM 2049 2575072 - 2575054 - T 100 -11.7 -5.82316 | opp_overlap 2575054 2575050 AGCAGGCAAAAAAAA CGGGGGA TTCAG TCCCCCG TTTGTTTTTTGATGC Rpic_2466 2576024 - 2575101 - | extracellular solute-binding protein family 3 Rpic_2467 2577405 - 2576137 - | D-amino-acid dehydrogenase TERM 2050 2576213 - 2576169 - G 78 -12.9 -3.55563 | gap 1, overlap 2576170 2576206 AGGGCACTGGGGAAA TCGCGGGCTTGC-GGCCG GCAATCAGAT CGGCCAGCAAGCCCGCAC TGCCCAGCGCTAGCG TERM 2051 2576212 - 2576170 - G 81 -16.4 -2.73124 | gap 1, overlap 2576169 2576206 GGGCACTGGGGAAAT CGCGGGCTTGC-GGCCG GCAATCAGAT CGGCCAGCAAGCCCGCA CTGCCCAGCGCTAGC TERM 2052 2577630 - 2577615 - R 74 -6.1 -4.56775 | overlap 2577617 ACCGTCGGGTAAAAA GCTCG GGACGG CGAGC TTAGAGCTCCGACCG TERM 2053 2577689 - 2577679 - R 72 -2.4 -4.7254 | ATCTTCGAGCAAAAA GCGC CGA GTGC CGAGCTTGAACCCTC TERM 2054 2577843 - 2577807 - R 91 -8.5 -4.8622 | overlap 2577790 2577786 GTCGCCAAGCAAAAA GCCTCACGGCTGGCGCT TGG AGCGCGGTGCGCGAGGC TTGAAGGGTCATGAA Rpic_2468 2579287 - 2577917 - | putative transmembrane protein Rpic_2469 2580900 - 2579287 - | glycosyl transferase group 1 TERM 2055 2580146 - 2580130 - G 82 -4.4 -5.0133 | gap 1, overlap 2580131 CATGGTTTCAAAAAA GCGCACC CACA GGT-CGC GGAAATAGCTGATCT Rpic_2470 2581883 - 2580897 - | putative transmembrane protein TERM 2056 2580987 - 2580957 - G 71 -12.5 -3.29263 | overlap 2580933 AGACCGGCTGGAGAA CTGCGCCAGCGCG GCGCG CGCGCCGGCATAG TCGCGGCGCAGGTAG Rpic_2471 2583384 - 2581909 - | putative transmembrane protein Rpic_2472 2583944 - 2583384 - | putative lipoprotein Rpic_2475 2590988 - 2588046 - | TM1410 hypothetical-related protein TERM 2057 2588944 - 2588970 + g 70 -11.4 -3.33361 | TGCAGGAGCTTCACG CGCTTGCCAGGC GGT GCCAGGCGCGCG TTGATGTAGTTGATG TERM 2058 2590495 - 2590485 - G 75 -3.2 -4.7497 | opp_overlap 2590494, overlap 2590487 CGTATCGAGGAAAAA GCCA CGG TAGC CCTTGTCCCACAGCG TERM 2059 2591672 - 2591696 + Gr 73 -10.7 -3.58428 | opp_overlap 2591659, overlap 2591659 2591636 2591668 TATCGGCAGCATCGC CGGCTTCGTCA TCG TGACGGGGCTG TTCATTCTCTTTGCC Rpic_2477 2592979 - 2592623 - | Carboxymuconolactone decarboxylase Rpic_2476 2591367 - 2592683 + | protein of unknown function DUF21 Rpic_2478 2593553 - 2592996 - | transcriptional regulator, MerR family TERM 2060 2593657 - 2593630 - R 100 -17.7 -4.77173 | CCCGCACAAAACAAA GCGCCGGCCCC TTCTCG GAGGCCGGCGC CTGGGTGTGCAGAAA TERM 2061 2593692 - 2593675 - R 85 -6.9 -4.82901 | overlap 2593677 GGGTGTGCAGAAAAA TCGGCGG GCTA CCGCAGA TCAACCGCCCACGCC Rpic_2479 2593917 - 2593693 - | signal peptide protein TERM 2062 2593732 - 2593746 + g 83 -2.1 -5.11254 | gap 1 CTTGTCCTGCTGCTT CG-GAC GATG GTCACG TTTCTTTTTCTTCTT Rpic_2480 2594329 - 2594601 + | putative signal peptide protein TERM 2063 2594640 - 2594622 - T 100 -16 -4.72272 | opp_overlap 2594622 TCGCGCCATGAAAAA CGCCGGGA ATC TCCCGGCG TTTTTTTTTAGCGCG TERM 2064 2594622 - 2594640 + T 100 -16 -6.06723 | opp_overlap 2594622 TCGCGCCATGAAAAA CGCCGGGA ATC TCCCGGCG TTTTTTTTTAGCGCG Rpic_2481 2596390 - 2594663 - | type I phosphodiesterase/nucleotide pyrophosphatase Rpic_2482 2596613 - 2597434 + | MltA-interacting MipA family protein Rpic_2483 2597735 - 2598202 + | hypothetical protein TERM 2065 2598241 - 2598196 - T 72 -10.9 -3.28712 | gap 1 CGCCGCGGCGGAGAA GGCGTAGCGCGTGAGCTGGCCG GCG CGGCCAGC-CGCCCGCAGTGCC CCCGCGTCAGGTGCG Rpic_2484 2599173 - 2598292 - | extracellular solute-binding protein family 3 TERM 2066 2599242 - 2599196 - R 85 -2.1 -5.40072 | overlap 2599199 TCCTGGTGAAAAAAA TGAGCGAGCCGATGCACAC GAAGGCAGG GACAGCATCGGCTCGCAAA GCTGCCAACGGGGGC Rpic_2485 2599754 - 2599269 - | cytochrome c-type protein TERM 2067 2599771 - 2599782 + H 73 -4.4 -4.58685 | AGTGTCTCCTAGTTG TCGT TGAA ACGA TTTTTGGAGCCATTT Rpic_2486 2600022 - 2602040 + | GAF modulated sigma54 specific transcriptional regulator, Fis family Rpic_2487 2602970 - 2602026 - | Prolyl aminopeptidase Rpic_2488 2603074 - 2603148 + | coenzyme PQQ biosynthesis protein A TERM 2068 2603181 - 2603204 + F 100 -12.4 -5.03314 | opp_overlap 2603171, overlap 2603166 CGCAAGGCTCCACGA GCCCGCCG GTTCTTCA CGGCGGGC TTTTTTCCGCCTGGA Rpic_2489 2603292 - 2604209 + | coenzyme PQQ biosynthesis protein B Rpic_2490 2604206 - 2604916 + | coenzyme PQQ biosynthesis protein C Rpic_2491 2604897 - 2605169 + | coenzyme PQQ synthesis D Rpic_2492 2605141 - 2606343 + | coenzyme PQQ biosynthesis protein E TERM 2069 2606361 - 2606392 + T 71 -7.9 -4.07568 | opp_overlap 2606367, overlap 2606365 2606367 CGCAATCCTGGAGAA GAGAAAGGGCCGG ACAATG CCGGCCCTCTTCC TTTTCCCCGGCGAGC TERM 2070 2606367 - 2606386 + T 76 -12.1 -3.41359 | opp_overlap 2606367, overlap 2606365 2606361 CCTGGAGAAGAGAAA GGGCCGG ACAATG CCGGCCC TCTTCCTTTTCCCCG TERM 2071 2606386 - 2606367 - T 95 -12.1 -4.27117 | opp_overlap 2606365 2606361 2606367 CCTGGAGAAGAGAAA GGGCCGG ACAATG CCGGCCC TCTTCCTTTTCCCCG Rpic_2493 2606751 - 2606419 - | cytochrome c class I Rpic_2494 2608576 - 2606822 - | PQQ-dependent dehydrogenase, methanol/ethanol family TERM 2072 2607314 - 2607296 - G 70 -11.7 -3.35679 | opp_overlap 2607283 2607298 2607312 GGCGGGCACGTAGAA CAGCCCG GTTTG CGGGCTG TATGCCATCGGCATC TERM 2073 2608552 - 2608527 - G 72 -13.3 -3.05844 | opp_overlap 2608549 GCGTGCACGGCAACA CTTGCAGCCGC CATG GCAGCCGCAAG TGCAATCACTCGTAG Rpic_2495 2609367 - 2608792 - | cytochrome B561 Rpic_2496 2610427 - 2609354 - | 40-residue YVTN family beta-propeller repeat protein Rpic_2497 2613069 - 2610448 - | TonB-dependent receptor Rpic_2498 2614843 - 2613323 - | Aldehyde Dehydrogenase TERM 2074 2615242 - 2615209 - g 71 -12.4 -3.25823 | gap 1, opp_overlap 2615231 CCGCGCCGATACGAA CGTCGACCCG-GCGG GCTCG CCGCTCTGGCCGACG ATTCAGCAGGAGGTG TERM 2075 2615704 - 2615718 + G 71 -9.2 -3.70902 | GGACACCGGCCTGGT GGCGGG CAT CCCGTC TTTCCATATCGAGCA Rpic_2499 2614997 - 2615905 + | conserved hypothetical membrane associated protein Rpic_2500 2615902 - 2616849 + | beta-lactamase domain protein TERM 2076 2616873 - 2616831 - f 76 -12.7 -3.41602 | gap 2 CCCACGTTACGAGAA CGCCGCGCTGGCGCCCTGACA TGG CGCCA-GACCCC-GCGCGGCG ACACTGGATGCGCAT Rpic_2501 2616851 - 2617819 + | beta-lactamase domain protein TERM 2077 2618225 - 2618215 - g 77 -8.2 -4.30576 | overlap 2618217 CCTCCAGTATCAAAA CCGC AGT GCGG CCGGCGGCAGCATCA Rpic_2502 2618081 - 2619211 + | putative outer membrane protein (porin) TERM 2078 2619252 - 2619233 - f 100 -12.2 -5.31275 | opp_overlap 2619233, overlap 2619246 CCTGAGCAGAAAAAA CCCTTGGT CAAC ACCAAGGG TTTTTTTCGCCCCTC TERM 2079 2619233 - 2619252 + F 100 -12.2 -5.41143 | opp_overlap 2619233 2619246 CCTGAGCAGAAAAAA CCCTTGGT CAAC ACCAAGGG TTTTTTTCGCCCCTC Rpic_2503 2619400 - 2620311 + | phospholipid/glycerol acyltransferase TERM 2080 2620386 - 2620361 - f 100 -16.9 -5.27938 | opp_overlap 2620361 AGCGCCAAACAAAAA GCCCCTTGGCC GTAA AGCCAAGGGGC TTTTGCTACTGCTGG TERM 2081 2620361 - 2620386 + F 100 -16.2 -4.32034 | opp_overlap 2620361 AGCGCCAAACAAAAA GCCCCTTGGC CGTAAA GCCAAGGGGC TTTTGCTACTGCTGG Rpic_2504 2620636 - 2620971 + | propeptide, PepSY amd peptidase M4 TERM 2082 2621728 - 2621707 - g 76 -2.1 -4.96646 | TCACACAAGCAAAAA CCTACGGCG GTCT CGGCATGGG CGCCATGTGGACCAG Rpic_2505 2621058 - 2621831 + | protein of unknown function DUF347 TERM 2083 2621825 - 2621838 + F 75 -2.4 -5.00616 | AGCTGTAGAGGCCAC CGAA TAGCGC TTCG TTTTTTAGGAGAACC Rpic_2506 2621857 - 2622309 + | conserved hypothetical signal peptide protein TERM 2084 2622939 - 2622954 + G 79 -6 -4.63218 | overlap 2622940 TGACACGCCCCTTGG GCGCCG TGGT CGGCGA TTTTCTTGACAAACC Rpic_2507 2622326 - 2623084 + | protein of unknown function DUF347 TERM 2085 2623304 - 2623271 - f 100 -19.7 -3.81258 | gap 1, opp_overlap 2623278 2623291, overlap 2623274 2623278 CCAAGAACACGGAAA CG-ACAAAGCCCCGCC ATT GGCGGGGCTTCGTTCG AACCAGGCTCCGTTT TERM 2086 2623300 - 2623274 - f 95 -20.2 -2.97802 | opp_overlap 2623278 2623291, overlap 2623271 2623278 AGAACACGGAAACGA CAAAGCCCCGCC ATT GGCGGGGCTTCG TTCGAACCAGGCTCC TERM 2087 2623278 - 2623296 + F 93 -17.4 -3.33696 | opp_overlap 2623274 2623271 2623278, overlap 2623291 CACGGAAACGACAAA GCCCCGCC ATT GGCGGGGC TTCGTTCGAACCAGG TERM 2088 2623296 - 2623278 - f 100 -17.4 -4.14725 | opp_overlap 2623278 2623291, overlap 2623274 2623271 CACGGAAACGACAAA GCCCCGCC ATT GGCGGGGC TTCGTTCGAACCAGG Rpic_2508 2623825 - 2624367 + | Hemerythrin HHE cation binding domain protein Rpic_2509 2624417 - 2624686 + | hypothetical protein Rpic_2510 2624849 - 2625673 + | transcriptional regulator, Crp/Fnr family Rpic_2513 2626229 - 2626936 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein Rpic_2514 2626967 - 2627302 + | Cupin 2 conserved barrel domain protein Rpic_2515 2628643 - 2627357 - | major facilitator superfamily MFS_1 Rpic_2516 2629460 - 2628675 - | PpiC-type peptidyl-prolyl cis-trans isomerase Rpic_2517 2630165 - 2629482 - | respiratory nitrate reductase, gamma subunit Rpic_2518 2630927 - 2630199 - | nitrate reductase molybdenum cofactor assembly chaperone Rpic_2519 2632455 - 2630929 - | nitrate reductase, beta subunit TERM 2089 2632207 - 2632194 - G 70 -2.3 -4.59773 | overlap 2632195 GCGGATTCGCAAAAA TCTGC GCCA GCAGC CGCCACTTGCCGCCC Rpic_2520 2636207 - 2632452 - | nitrate reductase, alpha subunit TERM 2090 2635759 - 2635740 - G 72 -8.5 -3.97368 | opp_overlap 2635749, overlap 2635736 CGTTGAACGGACAAA GCCGCCA AGGCCG CGGCGGC TCTGATAGCTGCGGC Rpic_2522 2636743 - 2637204 + | Integrase catalytic region Rpic_2523 2638072 - 2637443 - | protein of unknown function UPF0126 Rpic_2524 2639334 - 2638069 - | amidohydrolase Rpic_2525 2639624 - 2640193 + | hypothetical protein Rpic_2526 2640702 - 2641088 + | hypothetical protein TERM 2091 2641197 - 2641155 - f 72 -11.3 -3.31726 | overlap 2641153 2641156 CGTTTTCAGACAAGA CGC-CGTGCGACGCACCGACC ACT GGTCAGGGCG-CGCACGTACA TATCAGAGCGAGGAA Rpic_2527 2641218 - 2642279 + | hypothetical protein Rpic_2528 2642269 - 2642826 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rpic_2529 2643211 - 2643423 + | hypothetical protein Rpic_2530 2644533 - 2643760 - | hydroxyacylglutathione hydrolase Rpic_2532 2645415 - 2645020 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_2533 2645766 - 2645419 - | arylsulfate sulfotransferase involved in siderophore biosynthesis-like protein Rpic_2534 2647373 - 2645805 - | Gluconate 2-dehydrogenase (acceptor) TERM 2092 2647401 - 2647411 + r 88 -6.8 -4.99035 | overlap 2647395 TATTGCGCACCAGCA TGCC GCC GGCA TTTTTGTCTCGCTCC Rpic_2535 2648102 - 2647494 - | hypothetical protein TERM 2093 2647789 - 2647811 + g 72 -9 -4.18494 | TCGTGCAACTGCGTG GCCGCCTGGG CGT CCTGAGCGGC TTTTGCATCCAGGTC Rpic_2536 2648595 - 2648200 - | cytochrome c class I Rpic_2537 2648709 - 2648864 + | hypothetical protein TERM 2094 2649132 - 2649099 - T 100 -21.9 -3.64049 | gap 1, opp_overlap 2649106 2649119, overlap 2649102 2649106 CCAAGAACGCGTAAA CG-ACAAAGCCCCGCC AAT GGCGGGGCTTTGTTCG AACCAGGCTCCGTTT TERM 2095 2649128 - 2649102 - T 100 -22.4 -2.92935 | opp_overlap 2649106 2649119, overlap 2649099 2649106 AGAACGCGTAAACGA CAAAGCCCCGCC AAT GGCGGGGCTTTG TTCGAACCAGGCTCC TERM 2096 2649106 - 2649124 + T 100 -17.4 -4.15044 | opp_overlap 2649106 2649102 2649099, overlap 2649119 CGCGTAAACGACAAA GCCCCGCC AAT GGCGGGGC TTTGTTCGAACCAGG TERM 2097 2649124 - 2649106 - T 100 -17.4 -4.13654 | opp_overlap 2649106 2649119, overlap 2649102 2649099 CGCGTAAACGACAAA GCCCCGCC AAT GGCGGGGC TTTGTTCGAACCAGG Rpic_2538 2649516 - 2649220 - | hypothetical protein TERM 2098 2649292 - 2649276 - G 72 -3.6 -4.65933 | opp_overlap 2649284, overlap 2649272 2649278 GATTCTTAAAAGAAA CGGCGT TCCCT ACGCGG TCGCGTAGGTCCTTG Rpic_2539 2649653 - 2649967 + | hypothetical protein TERM 2099 2649992 - 2650010 + F 71 -8.8 -3.71649 | ATTTGGTCACCGCGA CTCCAGCT GCT AGCCGGAG TTTGCAGTTTACGGA Rpic_2540 2650032 - 2650325 + | hypothetical protein Rpic_2541 2650325 - 2650510 + | hypothetical protein Rpic_2542 2650510 - 2650659 + | hypothetical protein TERM 2100 2650850 - 2650864 + G 100 -8.5 -4.96468 | AACTGCGTGGGTGTT CCGGC AAATC GCCGG TTTTCTTTGGGTTTC Rpic_2543 2650659 - 2650907 + | hypothetical protein TERM 2101 2650934 - 2650916 - g 79 -4.4 -4.90266 | opp_overlap 2650926, overlap 2650918 TCTATGAATCAAAAA CTGCAAGC TCT GCGTGCCG TCGCTGGCCGCAATT Rpic_2544 2650904 - 2651146 + | hypothetical protein TERM 2102 2651182 - 2651199 + G 100 -14.1 -5.06414 | opp_overlap 2651180 CGTGCCGGTAAGACG CGGGGGC TTCG GCCCCCG TTTTTGTTGGGAGGC Rpic_2545 2651146 - 2651277 + | hypothetical protein Rpic_2546 2651290 - 2652744 + | hypothetical protein Rpic_2547 2652744 - 2653061 + | hypothetical protein Rpic_2548 2653069 - 2654199 + | Zonular occludens toxin TERM 2103 2654489 - 2654517 + F 100 -17.3 -3.51924 | opp_overlap 2654445, overlap 2654492 CTGCGAGGCGGGAGC GGCGGGCGGGCGC GAA GCGCCCGCCCTAC TTGTATCAATAACAC TERM 2104 2654492 - 2654514 + F 100 -22 -2.89793 | opp_overlap 2654445, overlap 2654489 CGAGGCGGGAGCGGC GGGCGGGCGC GAA GCGCCCGCCC TACTTGTATCAATAA TERM 2105 2654628 - 2654600 - f 100 -12.5 -5.38054 | gap 1 CTGGATAAAGAAAAA GCCCCGCGAACG TAGCAG CGTTC-CGGGGC GGTGGCACACAACAA TERM 2106 2654971 - 2654955 - g 93 -2.9 -5.40464 | GACGACAAAGAAAAA CATCACG GAC CTTGACG AGTTTCAGGCGTTGT TERM 2107 2655362 - 2655398 + G 72 -6.4 -4.25104 | overlap 2655363 ATCCGTCGATGTATG ACGCGCTCCAGCCCGT TTTGC GCGATTTGGAGCGCGA TTTTGGTACGGAGGA Rpic_2549 2654659 - 2655543 + | hypothetical protein Rpic_2550 2656480 - 2655890 - | Resolvase domain TERM 2108 2656425 - 2656398 - G 100 -12.8 -5.42198 | gap 1, opp_overlap 2656398 TCGGAAAAAATAAAA CCGACGC-CTGCT CGA AACAGTGCGTCGG TTTGTGCGTGAGTCT TERM 2109 2656398 - 2656425 + g 75 -10.6 -3.93136 | gap 1, opp_overlap 2656398 TCGGAAAAAATAAAA CCGACGC-CTGCT CGA AACAGTGCGTCGG TTTGTGCGTGAGTCT Rpic_2551 2658021 - 2656705 - | seryl-tRNA synthetase Rpic_2552 2659409 - 2658102 - | AAA ATPase central domain protein TERM 2110 2659064 - 2659087 + g 77 -5.3 -4.63486 | gap 1, overlap 2659064 2659065 2659067 GCCCGCTTTCCACGT G-CGGCAGGA AGGCA TCCTGCTGGC TTTTGTTGAAGCGAT Rpic_2553 2659436 - 2660344 + | transcriptional regulator, LysR family Rpic_2554 2660787 - 2660362 - | putative lipoprotein transmembrane TERM 2111 2660711 - 2660684 - G 76 -9.1 -4.15453 | GAATCGACGTCAAAA CGGGACGCACC GGTGGA GGCACATCCCG CAAAGACGGCCGCCG TERM 2112 2660744 - 2660718 - G 73 -12.2 -3.36073 | overlap 2660716 2660719 CACATCCCGCAAAGA CGGCCGCCGCTG ACG CAGCGACGGCAA CAGCGGCTGCTCGGT Rpic_2555 2661470 - 2660823 - | outer membrane lipoprotein carrier protein LolA Rpic_2556 2663925 - 2661580 - | cell divisionFtsK/SpoIIIE TERM 2113 2661997 - 2661958 - G 74 -12.9 -3.25823 | gap 2 CTCGTCCGACACGAA CGCGCCGTGCACGCGCACT GGCA AGC-CG-GTGCCCGGCGCG AGATACAGCATGTCG TERM 2114 2664434 - 2664407 - g 73 -5.5 -4.42238 | gap 1, opp_overlap 2664413 2664414 GCATCTGAAGGAAAA GCC-GATCCGCC TGGTG GGCGATTCTGGC GAATACACCTGCGAC Rpic_2557 2664135 - 2665091 + | thioredoxin reductase TERM 2115 2665156 - 2665123 - f 100 -26.9 -3.53012 | opp_overlap 2665114 2665114, overlap 2665092 2665126 TTTCCCGGGCGCAAA CAACGCGGCCGATGG GTGA CCATCGGCCGCGTTG CCATGTGCGGCACCT TERM 2116 2665153 - 2665126 - f 100 -22.8 -3.90744 | opp_overlap 2665114 2665114, overlap 2665123 CCCGGGCGCAAACAA CGCGGCCGATGG GTGA CCATCGGCCGCG TTGCCATGTGCGGCA TERM 2117 2665601 - 2665589 - g 74 -4.7 -4.57569 | CGACGTGCTCAAAAA GCTGC GCC GCGGC GAGTGGGCTACGCAA Rpic_2558 2665221 - 2665886 + | Smr protein/MutS2 Rpic_2559 2665932 - 2666555 + | protein of unknown function UPF0126 Rpic_2560 2666938 - 2666600 - | nitrogen regulatory protein P-II Rpic_2561 2667579 - 2666953 - | Methyltransferase type 11 TERM 2118 2667207 - 2667185 - G 77 -14.8 -2.89267 | overlap 2667180 TCGAACCACAGCACA CGCACGCCGG GCC CCAGCGCGCG ATGCAGCCGTTCGAC Rpic_2562 2669226 - 2667589 - | NAD+ synthetase TERM 2119 2667642 - 2667679 + g 77 -11.3 -3.77119 | CGCGCCCGAACGCCC GCGGCGTCACGCG GATGCCCACCGG CGCCTGACGCCGC TTGTATTCATTGATC TERM 2120 2669972 - 2669935 - g 72 -3.2 -4.70626 | overlap 2669926 2669937 2669938 GAAGAAGCGCAAAAA TATCCGCGCCGAGCGC CGCCGC GTGCACGACGCCGGTA TCACGTTCCGCCACG Rpic_2563 2669282 - 2670514 + | protein of unknown function DUF482 Rpic_2564 2670786 - 2670580 - | hypothetical protein TERM 2121 2671023 - 2671049 + r 93 -14.5 -3.86897 | gap 1, opp_overlap 2671023 TTTGCAAAGAAAAAA TCCCGGCACTCC ATCC GGAG-GCCGGGA TTTGTCAGACATGCC TERM 2122 2671049 - 2671023 - R 100 -14.5 -5.63517 | gap 1, opp_overlap 2671023 TTTGCAAAGAAAAAA TCCCGGCACTCC ATCC GGAG-GCCGGGA TTTGTCAGACATGCC Rpic_2565 2671615 - 2671088 - | Inorganic diphosphatase Rpic_2566 2671785 - 2673221 + | Aldehyde Dehydrogenase Rpic_2567 2673262 - 2674020 + | short-chain dehydrogenase/reductase SDR Rpic_2568 2674143 - 2675477 + | major facilitator superfamily MFS_1 TERM 2123 2675526 - 2675494 - T 85 -15.7 -3.21099 | opp_overlap 2675494 2675496 2675501, overlap 2675501 CGCCGTCACCAGCAA GAAAAAAGGCCGGGA TGA TCCCGGTCTTTTCTC ATTTCACGGCAAGCA TERM 2124 2675494 - 2675526 + T 79 -15.7 -2.71712 | opp_overlap 2675494 2675501, overlap 2675496 2675501 CGCCGTCACCAGCAA GAAAAAAGGCCGGGA TGA TCCCGGTCTTTTCTC ATTTCACGGCAAGCA TERM 2125 2675496 - 2675524 + T 70 -12.5 -2.90496 | opp_overlap 2675494 2675501, overlap 2675494 2675501 CCGTCACCAGCAAGA AAAAAGGCCGGGA TGA TCCCGGTCTTTTC TCATTTCACGGCAAG TERM 2126 2675501 - 2675519 + T 100 -12.4 -4.61566 | opp_overlap 2675501 2675494, overlap 2675496 2675494 ACCAGCAAGAAAAAA GGCCGGGA TGA TCCCGGTC TTTTCTCATTTCACG TERM 2127 2675519 - 2675501 - T 100 -10.2 -5.52023 | opp_overlap 2675496 2675494 2675501, overlap 2675494 ACCAGCAAGAAAAAA GGCCGGGA TGA TCCCGGTC TTTTCTCATTTCACG Rpic_2569 2676718 - 2675525 - | HemY domain protein Rpic_2570 2678829 - 2676721 - | protein of unknown function DUF513 hemX Rpic_2571 2679861 - 2678845 - | porphobilinogen deaminase TERM 2128 2678933 - 2678886 - G 75 -14.9 -2.74012 | gap 2, opp_overlap 2678928 CCAGCATGGCAAGGA TGTCGCGTGCGCCGCCGGCCAGC ATCT GCTGGGCGACG-CGCACGCC-CA GTGCGTCGGCTTCGG TERM 2129 2679039 - 2679016 - G 77 -8.8 -4.3255 | gap 1, overlap 2679018 CTGCGAAGCAACAAA GGCGCGCAGGC GCA GCGTGC-CGCC GTCCGACCACTGCGC TERM 2130 2682566 - 2682550 - g 71 -9.3 -3.75153 | CGCCGGCAACGCAAA GGCCCGC GCC GCGCGCC TGACCACGCTCAAGC Rpic_2572 2679971 - 2682976 + | Phosphoenolpyruvate carboxylase TERM 2131 2683553 - 2683521 - T 100 -13.5 -5.75945 | overlap 2683538 ACGCGCCAAAAAAAA CCGCCACACCG TAACGAGCAGC CGGTGTGGCGG CCCAACAAACCTCTT Rpic_2574 2684172 - 2683567 - | hypothetical protein Rpic_2575 2684381 - 2685028 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpic_2576 2685028 - 2685747 + | putative transmembrane protein Rpic_2577 2685851 - 2687266 + | argininosuccinate lyase TERM 2132 2687316 - 2687290 - T 100 -19.5 -5.27335 | opp_overlap 2687290 CGCTTCAAACAAAAA CGCCGCGCTGA TCAAC TCAGCGCGGCG TTTTTGTTTGTGCGA TERM 2133 2687290 - 2687316 + T 100 -19.5 -5.38054 | opp_overlap 2687290 CGCTTCAAACAAAAA CGCCGCGCTGA TCAAC TCAGCGCGGCG TTTTTGTTTGTGCGA Rpic_2578 2689618 - 2687339 - | Lysine decarboxylase TERM 2134 2687446 - 2687469 + g 79 -6 -4.63486 | gap 1, opp_overlap 2687450 TGTTGAACTCGCGAG CGAAC-TGCAG GTA CTGCACGATCG TTTTATTGAAGCGCT Rpic_2579 2690258 - 2689692 - | deoxycytidine triphosphate deaminase TERM 2135 2690326 - 2690284 - R 100 -22.2 -3.15249 | opp_overlap 2690288, overlap 2690288 GATACCTTGGATGAA CAAATGGGGGCAGCCTTCGC GGT GCGAAAACTGTCCCCATTTG GTCACGCCAGCGGCC TERM 2136 2690288 - 2690322 + r 93 -15 -3.72576 | opp_overlap 2690284 2690288 CCTTGGATGAACAAA TGGGGGCAGCCTTCGC GGT GCGAAAACTGTCCCCA TTTGGTCACGCCAGC TERM 2137 2690322 - 2690288 - R 100 -17.2 -4.24342 | opp_overlap 2690288, overlap 2690284 CCTTGGATGAACAAA TGGGGGCAGCCTTCGC GGT GCGAAAACTGTCCCCA TTTGGTCACGCCAGC Rpic_2580 2691330 - 2690455 - | formate dehydrogenase subunit FdhD TERM 2138 2691374 - 2691354 - R 100 -12.6 -5.27335 | opp_overlap 2691370 2691371 TCGTTCAAATAAAAA TGCGCACG GCGAG CGTGCGCA TGCTGCGGTTGGTAC Rpic_2581 2691972 - 2691421 - | superoxide dismutase copper/zinc binding Rpic_2582 2692378 - 2692055 - | conserved hypothetical signal peptide protein Rpic_2583 2693577 - 2692414 - | formate dehydrogenase, gamma subunit TERM 2139 2693173 - 2693161 - G 73 -9.1 -3.89354 | GCGCCAAAGGAAGAA GGCCA GGA TGGCC GACGGCACCAGCACC TERM 2140 2693319 - 2693335 + g 71 -10.8 -3.63569 | overlap 2693327 GATCGGAGTTCACCT CGCGCC AGACG GGCGCG TTGTTGCCCGGTTGC Rpic_2584 2693846 - 2693601 - | putative lipoprotein Rpic_2585 2694511 - 2693843 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpic_2586 2697533 - 2694528 - | molybdopterin oxidoreductase Rpic_2587 2697852 - 2697601 - | formate dehydrogenase region TAT target TERM 2141 2697964 - 2697950 - R 71 -7.8 -4.13304 | opp_overlap 2697950 2697951, overlap 2697951 AAACCATGCCCAAAA CCCCTC ACC GAGGGA TTTTCCTGACGATTT Rpic_2588 2698759 - 2698088 - | cytoplasmic chaperone TorD family protein Rpic_2589 2700964 - 2698805 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 2142 2699654 - 2699686 + g 89 -16.3 -3.18383 | ATTCACCGGCACGCC CTGGGCCTTGCCG ATACGCG CGGCACGGCCCAG TTGCTCGATCAGCGT TERM 2143 2701010 - 2701041 + r 83 -2 -5.18726 | opp_overlap 2701012, overlap 2701013 CGCAGGCTGTGGAGA CATGGCAGCACGGT CTTT GCCGCGCGGCCTTC TTTTTATTCTACGGA TERM 2144 2701013 - 2701038 + r 81 -8.1 -4.68512 | opp_overlap 2701012, overlap 2701010 AGGCTGTGGAGACAT GGCAGCACGGT CTTT GCCGCGCGGCC TTCTTTTTATTCTAC Rpic_2590 2701605 - 2701045 - | proline rich protein Rpic_2591 2702156 - 2701617 - | hypothetical protein Rpic_2592 2703258 - 2702167 - | protein of unknown function DUF59 TERM 2145 2702381 - 2702415 + g 76 -13.7 -3.12351 | gap 1 ACGCCGTACTGTTCG CACATCTTC-TCGCCG CCGC CGGCGCCGAAGATGTG TTCGGTATGGCCGCA Rpic_2593 2703461 - 2704090 + | OmpA/MotB domain protein TERM 2146 2704199 - 2704218 + F 100 -12.1 -5.47218 | opp_overlap 2704196 2704197 CCGTTGTGGAAAGCT GCGCCGG CTCTGA CCGGCGC TTTTTTTGGGTCACA TERM 2147 2706401 - 2706413 + G 73 -5.5 -4.34263 | opp_overlap 2706401 GCTGCCGATGAGAAG GCTCA GCC TGGGC TTTATATTCTTGAGC Rpic_2594 2704334 - 2706466 + | methionyl-tRNA synthetase Rpic_2595 2707117 - 2706575 - | putative lipoprotein TERM 2148 2707207 - 2707177 - R 81 -13.2 -3.34398 | overlap 2707175 TCCTCGTGCGAAACA TGGACCCGCCGCCA TTC TGGCAGCCGGGCCA ACCGTTTACCAACGT Rpic_2596 2711127 - 2707213 - | protein of unknown function DUF490 TERM 2149 2711025 - 2711011 - G 91 -9.2 -4.78107 | overlap 2711020 2711021 GATCACCAGCAAAAA GGCGAC CAA GCCGCC GAGCCAGCGCAGCGT Rpic_2597 2712917 - 2711130 - | surface antigen (D15) TERM 2150 2712855 - 2712831 - G 95 -14.9 -4.02334 | GAGGGACAGCACAAA GCCTGCCGCCA GCG CGGCGGCGGGC AAACCCAGGAAACGA Rpic_2598 2713155 - 2713343 + | hypothetical protein Rpic_2599 2713383 - 2714264 + | chromosome segregation and condensation protein ScpA Rpic_2600 2714303 - 2715154 + | pantoate/beta-alanine ligase TERM 2151 2715175 - 2715204 + F 79 -15.9 -2.74461 | gap 1, opp_overlap 2715181, overlap 2715181 GCAGCCTCGTTCCAC G-AAAAAGCCCGGC AGT GCCGGGCTTTTTTC ATTTCACCATGACTC TERM 2152 2715181 - 2715197 + F 100 -15.1 -5.37593 | opp_overlap 2715181, overlap 2715175 TCGTTCCACGAAAAA GCCCGGC AGT GCCGGGC TTTTTTCATTTCACC TERM 2153 2715197 - 2715181 - f 100 -15.1 -4.72272 | opp_overlap 2715181 2715175 TCGTTCCACGAAAAA GCCCGGC AGT GCCGGGC TTTTTTCATTTCACC TERM 2154 2715652 - 2715610 - g 80 -14.9 -3.14132 | TCGCTGGCCCAGGAA TGGCTG-GCCGAGGTGCGCCG GGG CGGCG-ACCCCAGCGCGGCCA AGGCCGCCGCCCGTT Rpic_2601 2715382 - 2716581 + | integrase family protein TERM 2155 2716897 - 2716919 + G 85 -16.4 -3.01712 | TTCTGACCCGGCCAA TTCGCCAGAC AGT GTCTGGCGAA TCTTCCCCGGAGCCA Rpic_2602 2716578 - 2717714 + | protein of unknown function DUF1016 Rpic_2603 2718548 - 2717760 - | hypothetical protein Rpic_2604 2719457 - 2718555 - | hypothetical protein TERM 2156 2719515 - 2719492 - H 85 -2.5 -5.38047 | gap 1 GACGGATATAAAAAA TCGTCGTACA TTAAC TATACG-CGA TCATCCTTCGGTCGT TERM 2157 2719875 - 2719863 - g 78 -3.3 -4.85396 | ACAAGGACAAGAAAA TCGTG ATC CGCGA GATGTGGTCGTCCCC Rpic_2605 2719547 - 2720740 + | hypothetical protein TERM 2158 2721475 - 2721502 + G 70 -11.2 -3.39449 | ACAGTTGTCGATCTC GCGACGCTGCTC GATC GAGCAGCGGAGC TTGGTATTGATCGCG TERM 2159 2722811 - 2722797 - g 72 -8.6 -4.07568 | opp_overlap 2722800 2722803 2722804 CGGGCTTGTTCAAAA TTTGCG CGC CGCAAA CGCGGCCTCTTTGGG Rpic_2606 2720737 - 2722992 + | UBA/THIF-type NAD/FAD binding protein Rpic_2607 2723038 - 2724108 + | hypothetical protein Rpic_2608 2724485 - 2724835 + | hypothetical protein TERM 2160 2724840 - 2724869 + F 72 -13.5 -2.6415 | overlap 2724839 TCGTTGTCTGACCTG GTTCTGGGGCGCC GCAA GGCGCTCCTGAGC GTTCTCAATCATTTC TERM 2161 2725038 - 2725057 + G 79 -7.1 -4.46212 | overlap 2725039 AGTTTGGCGCACAGT TCCGGTG CCGCGT CACCGGG TTTTATCGTCCCAGC Rpic_2609 2724899 - 2725177 + | hypothetical protein TERM 2162 2725279 - 2725302 + T 72 -13.8 -2.56596 | opp_overlap 2725284, overlap 2725275 CGCCCCTCTCGCGCA GCGAACCGGC TGGT GCCGGATCGC TCCCTTCATGCCGGA Rpic_2610 2725619 - 2725320 - | hypothetical protein Rpic_2611 2726555 - 2727379 + | protein of unknown function DUF932 TERM 2163 2728050 - 2728065 + G 71 -7.5 -4.13767 | opp_overlap 2728061 CACCGACGACCACGC CGCGC AGGAAA GCGCG TTTTACGATGCGCCG Rpic_2612 2727445 - 2729484 + | ParB domain protein nuclease TERM 2164 2729501 - 2729524 + F 87 -16.7 -3.12351 | CCGCGCTGAAGGCGC GCGCCCCGG CCTCGA CCGGGGCGC TTCGCTGTCAGGAGC Rpic_2613 2729547 - 2729756 + | hypothetical protein TERM 2165 2729809 - 2729757 - f 76 -9.8 -3.84915 | gap 2, overlap 2729769 GAGACGAAGGAATAA CCGTCGTCAACACCGCGCCCAGGCCG TTC CGCCCTGGGCGCGGTG--AACTTCAA AAAATCCGGGCGCGG TERM 2166 2729799 - 2729769 - f 100 -24 -3.02461 | overlap 2729757 TAACCGTCGTCAACA CCGCGCCCAGGCCG TTC CGCCCTGGGCGCGG TGAACTTCAAAAAAT TERM 2167 2729841 - 2729814 - f 100 -19.8 -5.09426 | opp_overlap 2729815, overlap 2729815 GTGAACTTCAAAAAA TCCGGGCGCGGC GGTG GCCGCGCCCGGT GTTGAAGGCCAATAG TERM 2168 2729840 - 2729815 - f 100 -23.3 -3.64933 | opp_overlap 2729815, overlap 2729814 TGAACTTCAAAAAAT CCGGGCGCGGC GGTG GCCGCGCCCGG TGTTGAAGGCCAATA TERM 2169 2729815 - 2729840 + F 100 -23.3 -3.01924 | opp_overlap 2729814 2729815 TGAACTTCAAAAAAT CCGGGCGCGGC GGTG GCCGCGCCCGG TGTTGAAGGCCAATA Rpic_2614 2729973 - 2730434 + | hypothetical protein TERM 2170 2730657 - 2730635 - f 76 -14.8 -2.62184 | overlap 2730640 CGCCCCTCGATACCA CCGAACCGGC TGT GCCGGATCGG GCCGGCCAGTGCCTC Rpic_2615 2731222 - 2731536 + | protein of unknown function DUF736 TERM 2171 2731676 - 2731702 + T 70 -10 -3.55444 | overlap 2731672 TGCAAGAATGGCCGG GCGTGTCGGTGC CTT GCACCGCCGGGC TTTGCGGGCTGCGCC Rpic_2616 2732195 - 2731902 - | helix-turn-helix domain protein TERM 2172 2731938 - 2731961 + g 89 -18.2 -3.15861 | CGTCACAGTCTCCAA CTGCTGGCGC ACCT GCGCCAGCAG TTGATCGACCTGCTG TERM 2173 2732701 - 2732715 + G 77 -12.8 -3.31461 | CGGGATCGGTATTTC CGGGCG GTG CGCCCG TTGTCGGAGTACCTG Rpic_2617 2732419 - 2732766 + | putative lipoprotein TERM 2174 2733329 - 2733293 - g 79 -15.2 -3.01712 | gap 2 GCGTCTGCTGGAAGA CCCGGCCCTGGATGCGCG TGA CGCGCATCC-GG-CCTGG CTGCCTGGCCATGAA Rpic_2618 2733108 - 2733857 + | hypothetical protein Rpic_2619 2733941 - 2734222 + | hypothetical protein TERM 2175 2734627 - 2734605 - g 74 -14.8 -2.62184 | GTCGCTGCGAGACTA CCAGCGCCTC AAG GCGGCGCTGG ATCGCCTGCAATCCA Rpic_2620 2734249 - 2735097 + | conserved hypothetical replication initiator and transcription repressor protein TERM 2176 2735404 - 2735378 - g 100 -11.6 -4.8622 | gap 1, overlap 2735394 2735397 CTGCTGAACCAAAAA GGCG-GCGTGG GCAAGA CCACGCTCGCC ACCCACATCGCCGGC Rpic_2621 2735351 - 2735989 + | Cobyrinic acid ac-diamide synthase TERM 2177 2736037 - 2736018 - g 71 -10.6 -3.61103 | opp_overlap 2736035 CAAGCGCACGGCAAA GCGCGTCG GTAT CGGCGCGC GTCCGCCCGCGAATC TERM 2178 2736156 - 2736140 - g 74 -15.1 -2.62616 | TGACCCTCGACATCA CGCCCGC CAT GCGGGCG CGCATCAAGGTATCG Rpic_2622 2735986 - 2736249 + | hypothetical protein Rpic_2623 2736246 - 2736779 + | hypothetical protein TERM 2179 2737299 - 2737342 + G 75 -15.3 -2.73364 | gap 2, overlap 2737301 ACAGCCGGTATTTCG GGCCGGTCAGCGCAGCCGCCG TGAT CGGC-GTTGCGC-GTCCGGTC TGGTTGGAGTCGCGC TERM 2180 2737301 - 2737340 + G 73 -14.3 -2.91274 | gap 2, overlap 2737299 AGCCGGTATTTCGGG CCGGTCAGCGCAGCCGCCG TGAT CGGC-GTTGCGC-GTCCGG TCTGGTTGGAGTCGC Rpic_2624 2736776 - 2737363 + | putative conjugal transfer TRAF transmembrane protein TERM 2181 2737648 - 2737636 - f 70 -3.3 -4.7033 | overlap 2737637 GAAGGCAAGACAAAA GGGTG CGG CACCT GTCGGCCCGCAAAGC TERM 2182 2738396 - 2738369 - g 80 -14.2 -3.42503 | gap 1 CTGGAACACCGACAA CCCGCACACGCAC ATC GT-CGTGCGCGGG CGCGACGACACCGGC TERM 2183 2739063 - 2739041 - g 71 -9.9 -3.78934 | gap 1 CGCGGCCGACAAGAA CATCGC-CGC GTTG GCGAGCGATG GCCTGTACCGCACCG Rpic_2625 2737800 - 2739782 + | hypothetical protein TERM 2184 2740299 - 2740249 - T 73 -14.1 -2.71144 | overlap 2740270 CACTTGCGGCAATCA GGTAGTCAGAGGCC-AAGGCAAGCC CGA GACC-GCCTCCGGCCTCCGGCTACC GCGCCTTGTACGGCG TERM 2185 2740295 - 2740270 - T 74 -12.5 -3.1875 | overlap 2740249 CAGAGGCCAAGGCAA GCCCGAGACCG CCTC CGGCCTCCGGC TACCGCGCCTTGTAC TERM 2186 2740486 - 2740474 - T 71 -9.1 -3.78775 | overlap 2740448 2740446 CCGCGCAGCAGCAAA GCTCG AAT CGAGC CATCGCGTTCGACAT Rpic_2627 2741441 - 2740659 - | short-chain dehydrogenase/reductase SDR TERM 2187 2741124 - 2741140 + g 74 -2.1 -4.77165 | overlap 2741117 2741113 2741125 2741126 GCGATCTGCCGCGCA TGGGCGG ATT TCGCCGG TTTTCTTGTCGCGGC Rpic_2628 2742261 - 2741476 - | Enoyl-CoA hydratase/isomerase Rpic_2629 2743454 - 2742273 - | acetyl-CoA acetyltransferase Rpic_2630 2745159 - 2743483 - | AMP-dependent synthetase and ligase Rpic_2631 2746220 - 2745171 - | L-carnitine dehydratase/bile acid-inducible protein F Rpic_2632 2747368 - 2746223 - | acyl-CoA dehydrogenase domain protein TERM 2188 2747026 - 2747039 + g 71 -8.1 -4.19953 | overlap 2747033 CGTTCGTCACCTTGG GCAGC CAGC GCTGC TTTTGCGCTTCGGTG TERM 2189 2747426 - 2747438 + H 70 -3.4 -4.59773 | CGTTCCGCACAGCGC CACT GCCGA AGTG TTTTTGGGGATGCGA Rpic_2633 2747563 - 2748591 + | transcriptional regulator, AraC family Rpic_2634 2748671 - 2748564 - | hypothetical protein Rpic_2635 2748939 - 2749988 + | beta-lactamase domain protein Rpic_2636 2750455 - 2750177 - | transposase family protein Rpic_2637 2750723 - 2752090 + | major facilitator superfamily MFS_1 Rpic_2638 2752115 - 2753896 + | acyl-CoA dehydrogenase domain protein TERM 2190 2754056 - 2754028 - g 74 -13.2 -3.24902 | CAAGATGAGCATGAA CCCCTTCGACGA GATTG CCGTCGAAGAGG CTGTGCGGCTCAGGG Rpic_2639 2753921 - 2754670 + | Electron transfer flavoprotein alpha/beta-subunit Rpic_2640 2754671 - 2755603 + | Electron transfer flavoprotein alpha subunit Rpic_2641 2755621 - 2756535 + | transcriptional regulator, LysR family Rpic_2642 2756561 - 2756791 + | hypothetical protein TERM 2191 2756843 - 2756869 + F 100 -10.1 -5.29716 | gap 1, overlap 2756844 GCAGTTACCTCATCA CGCCGCA-GCGC GCTC GCGCATGCGGCA TTTTTATTGTCTTCG TERM 2192 2756844 - 2756868 + F 91 -13.6 -3.76203 | gap 1, overlap 2756843 CAGTTACCTCATCAC GCCGCA-GCGC GCTC GCGCATGCGGC ATTTTTATTGTCTTC Rpic_2643 2757009 - 2759027 + | TRAG family protein Rpic_2644 2759024 - 2759488 + | CopG domain protein DNA-binding domain protein TERM 2193 2760432 - 2760481 + G 70 -5.7 -4.23213 | gap 2, overlap 2760432 2760448 CGCGGGCTACCAACT GG-CGGA-TGCGCTGGAGGCTCC ATTCCC GGAGCTGCTGTCGCAGTCCGACC TTTCTTCCCTGTCCC Rpic_2645 2759485 - 2760522 + | P-type conjugative transfer ATPase TrbB Rpic_2646 2760519 - 2760911 + | Conjugal transfer protein TrbC Rpic_2647 2760908 - 2761192 + | putative conjugal transfer TrbD transmembrane protein TERM 2194 2762096 - 2762072 - g 80 -12.2 -3.77832 | gap 1, opp_overlap 2762071, overlap 2762065 CGCCAAACGCAAGAA CGTCATCGCGC TGCT GCGCGA-GACG ATCTTCCAGCAGGAA TERM 2195 2762580 - 2762603 + G 77 -11.8 -3.56643 | gap 1 ATGGGCAAGTCGGTG CTGC-TCGCCA CCT TGGCGATGCAG TTTCGGCGCTATCGC Rpic_2648 2761212 - 2763689 + | AAA ATPase Rpic_2649 2763686 - 2764441 + | P-type conjugative transfer protein TrbJ Rpic_2650 2764454 - 2765806 + | P-type conjugative transfer protein TrbL TERM 2196 2766107 - 2766055 - g 90 -17.1 -3.31461 | CATCGAGGTGGATAA CGC-GGGCCAGGTGC-GCGCGGTCGGC GAG GCCG-CCACGCCGTACC-GGCCCAGCG ATGCGCAGATCGCCT Rpic_2651 2765825 - 2766529 + | Conjugal transfer protein Rpic_2652 2766526 - 2767521 + | P-type conjugative transfer protein TrbG Rpic_2653 2767524 - 2768795 + | conjugation TrbI family protein TERM 2197 2768829 - 2768808 - g 72 -12.9 -3.14051 | overlap 2768806 TGAGCGCGACCAAGA GGCTGCGGC TCGG GCCGCTGCC CAAGACCGAGAATGT Rpic_2654 2768792 - 2769037 + | hypothetical protein TERM 2198 2769068 - 2769099 + T 80 -10.8 -4.10453 | opp_overlap 2769070 2769073, overlap 2769074 CGCCATCCACTCACC AAGAAGGCGCAGCC CACT GGCTGCGCTTTCGC TTTTGAGGAGCTTTC TERM 2199 2769097 - 2769070 - T 85 -15.6 -3.18912 | opp_overlap 2769068 2769074, overlap 2769073 CCATCCACTCACCAA GAAGGCGCAGCC CACT GGCTGCGCTTTC GCTTTTGAGGAGCTT TERM 2200 2769094 - 2769073 - T 80 -11.5 -3.73647 | opp_overlap 2769068 2769074, overlap 2769070 TCCACTCACCAAGAA GGCGCAGCC CACT GGCTGCGCT TTCGCTTTTGAGGAG TERM 2201 2769074 - 2769093 + T 93 -15 -3.92659 | opp_overlap 2769073 2769070, overlap 2769068 CCACTCACCAAGAAG GCGCAGCC CACT GGCTGCGC TTTCGCTTTTGAGGA TERM 2202 2769270 - 2769310 + T 70 -4 -4.72272 | overlap 2769273 CCCCATAAGACCTTT TGCCCCGCTG-CATGTCTGC ATG GAAGACTTGACAGCGGA-CA TTTTTCATGCCGCCG Rpic_2655 2769980 - 2769315 - | putative partition-related protein Rpic_2656 2771551 - 2770055 - | cobyric acid synthase CobQ TERM 2203 2770775 - 2770759 - G 71 -10.1 -3.68302 | opp_overlap 2770760, overlap 2770762 GCAACACCGGAATAA CGACGCG CAG CGCATCG GGCGAGGCTGCACGC Rpic_2657 2771613 - 2772188 + | Adenosylcobinamide-phosphate guanylyltransferase TERM 2204 2772662 - 2772701 + G 70 -11.5 -3.30629 | gap 2, opp_overlap 2772627 2772676, overlap 2772660 2772653 2772663 CGTGCCGCCGTGGAA TCGGCGCTGGAGAACGGCA GCGA TGCCG-TCTTC-GCGCCGC TGTTCTGGCTTGTTG TERM 2205 2772663 - 2772700 + G 74 -15 -2.57654 | gap 2, opp_overlap 2772627 2772676, overlap 2772662 2772660 2772653 GTGCCGCCGTGGAAT CGGCGCTGGAGAACGGCA GCGA TGCCG-TCTTC-GCGCCG CTGTTCTGGCTTGTT Rpic_2658 2772185 - 2773165 + | cobalamin biosynthesis protein CobD Rpic_2659 2773162 - 2774169 + | L-threonine-O-3-phosphate decarboxylase Rpic_2660 2774180 - 2775136 + | periplasmic binding protein Rpic_2661 2775727 - 2775149 - | alpha-ribazole phosphatase TERM 2206 2775699 - 2775679 - G 80 -15.4 -2.85351 | TGCGGCCATAGCAGA GGCCCGCC GTCAT GGCGGGCC GCGCGTGGCGGATCA Rpic_2662 2776482 - 2775712 - | cobalamin 5'-phosphate synthase TERM 2207 2775878 - 2775858 - G 70 -11.1 -3.31792 | GGATCAGGCCGACAA CGATGAGCG CCG CGCACATCG GCCCGAACCACAGCA Rpic_2663 2777543 - 2776479 - | nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase Rpic_2664 2778163 - 2777543 - | cob(I)alamin adenosyltransferase Rpic_2665 2778998 - 2778153 - | ABC transporter related Rpic_2666 2780005 - 2778995 - | transport system permease protein TERM 2208 2779320 - 2779277 - G 74 -13 -3.28416 | gap 1, opp_overlap 2779285, overlap 2779281 CACCACGTAGATCAA CGCACGCACGCGCGCCACGGG CAC CCCA-AGCGCACGGGCGCGGG TTTCGCCGGTCAGCA TERM 2209 2779815 - 2779796 - G 71 -9.2 -3.78775 | opp_overlap 2779798, overlap 2779800 CCCGCCAGCAGCAAA TGCAGCGC CCGC GCGCGGCA GGCGCAATTCGATGA Rpic_2667 2781885 - 2780002 - | TonB-dependent receptor Rpic_2668 2782441 - 2782755 + | hypothetical protein Rpic_2669 2782758 - 2783075 + | protein of unknown function DUF710 TERM 2210 2783099 - 2783136 + F 75 -14.1 -2.97747 | opp_overlap 2783088, overlap 2783097 AAAACGGGTTTGTAA CCGGATCGCATCCGGGC TTGG GTTCGGATGCGAACGGG TGTATAGTGTCACGC TERM 2211 2783238 - 2783291 + F 88 -13.3 -3.67564 | gap 1, opp_overlap 2783237 2783267 TTGCCTGCGATGAAT CTCTCAGACGCATCGCCATGC-GC TCGAAAC GCAGCGTGATGATGCGTCTGACAG TTTCCCTGCCTGGTT TERM 2212 2783549 - 2783512 - f 83 -15.7 -3.05715 | opp_overlap 2783517, overlap 2783517 AAGGTGGGGACCCAA CAAAAGGCGGTAGTGCA CATG TGCGCTACCGCCTTTTT CTTTGCCTATCTGCG TERM 2213 2783544 - 2783517 - f 100 -15.6 -4.67982 | opp_overlap 2783517, overlap 2783512 GGGGACCCAACAAAA GGCGGTAGTGCA CATG TGCGCTACCGCC TTTTTCTTTGCCTAT TERM 2214 2783517 - 2783544 + F 100 -17.8 -5.31519 | opp_overlap 2783517 2783512 GGGGACCCAACAAAA GGCGGTAGTGCA CATG TGCGCTACCGCC TTTTTCTTTGCCTAT Rpic_2670 2783662 - 2784132 + | protein of unknown function DUF55 Rpic_2671 2784226 - 2784927 + | protein of unknown function DUF541 TERM 2215 2784984 - 2785006 + T 100 -19.2 -4.78848 | TGCTCAGTCTCCGAG CGCCCGATGC ACC GCATCGGGCG TTTTGTATTTCAAGG Rpic_2672 2785799 - 2784972 - | Integrase catalytic region Rpic_2673 2786200 - 2785802 - | ISPsy11, transposase OrfA TERM 2216 2786288 - 2786270 - R 100 -14.6 -5.14965 | opp_overlap 2786270 AGCTCCATGAAAAAA GCCACCGA AGT TCGGTGGC TTTTTCTTTGCGCGG TERM 2217 2786270 - 2786288 + r 100 -14.6 -5.27335 | opp_overlap 2786270 AGCTCCATGAAAAAA GCCACCGA AGT TCGGTGGC TTTTTCTTTGCGCGG TERM 2218 2786312 - 2786327 + r 95 -6.8 -5.43866 | overlap 2786309 2786313 TGCGCGGTTGCTGCG TCAGGC GTGC GCCTGG TTTTTTTCACCGTTG Rpic_2674 2787214 - 2786312 - | prolipoprotein diacylglyceryl transferase TERM 2219 2786654 - 2786641 - G 86 -9.5 -4.58395 | opp_overlap 2786650 GGTACTGGTCAAAAA CGGCC TGCA GGCCG CTGGTGACGGCCTCT Rpic_2675 2788173 - 2787229 - | transcriptional regulator, LysR family TERM 2220 2788113 - 2788101 - G 71 -10.5 -3.64703 | GCTGCGTCATCGAAA GCCGC TCG GCGGC GCGCCCGAAATGTAA TERM 2221 2789953 - 2789937 - g 71 -7.9 -4.11484 | GCGAAGTTTGCAAAA CTGGCAG CAA CGGCCAG CAAGGGTGCGGTAAC Rpic_2676 2788302 - 2789975 + | dihydroxy-acid dehydratase TERM 2222 2789994 - 2790021 + T 74 -12.8 -3.16564 | opp_overlap 2790000, overlap 2790000 GTTGGCGACACCCAC AAAAAACCCGCC ACAC GGCGGGTTTTTC TTGATCCGATCAGCG TERM 2223 2790015 - 2790000 - T 100 -11.8 -5.29782 | opp_overlap 2789994 2790000 GACACCCACAAAAAA CCCGCC ACAC GGCGGG TTTTTCTTGATCCGA TERM 2224 2790000 - 2790015 + T 100 -11.8 -5.1356 | opp_overlap 2790000, overlap 2789994 GACACCCACAAAAAA CCCGCC ACAC GGCGGG TTTTTCTTGATCCGA Rpic_2677 2790456 - 2790031 - | hypothetical protein Rpic_2678 2790881 - 2790453 - | DNA polymerase III chi subunit HolC Rpic_2679 2792412 - 2790904 - | Leucyl aminopeptidase TERM 2225 2792381 - 2792394 + g 74 -5.2 -4.48741 | AGGGCGCCCGCTTTG GCCC AGTCCA GGGC TTTTGTGCTAAATTC Rpic_2680 2792551 - 2793669 + | permease YjgP/YjgQ family protein Rpic_2681 2793669 - 2794862 + | permease YjgP/YjgQ family protein Rpic_2682 2794862 - 2795233 + | cobalamin (vitamin B12) biosynthesis CbiX protein Rpic_2683 2795645 - 2795244 - | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 2226 2795793 - 2795758 - R 76 -9.1 -4.0641 | gap 3, overlap 2795759 GGGGAGTGAGAGAAA GCGCTGGCGCGCC-GAGC GCA GCTCAGGCG-GCCAA-GC TATGGGGATGCGCGT Rpic_2684 2796589 - 2795780 - | uroporphyrin-III C-methyltransferase TERM 2227 2796172 - 2796149 - G 85 -12.4 -4.15044 | opp_overlap 2796158 GGCTTGCGTAACAAA CGCGACGCTG CGGG CAACGCCGCG CTTGGTCAAGGGTTG Rpic_2685 2797977 - 2796646 - | sulfate adenylyltransferase, large subunit Rpic_2686 2798930 - 2797980 - | sulfate adenylyltransferase, small subunit Rpic_2687 2799744 - 2798941 - | adenylylsulfate reductase, thioredoxin dependent Rpic_2688 2800289 - 2799741 - | hypothetical protein Rpic_2689 2801969 - 2800308 - | Sulfite reductase (ferredoxin) Rpic_2690 2802868 - 2802095 - | protein of unknown function DUF81 Rpic_2691 2803022 - 2803963 + | transcriptional regulator, LysR family Rpic_2692 2804005 - 2805174 + | putative amino acid-binding periplasmic (PBP) ABC transporter protein Rpic_2693 2805216 - 2806100 + | 2-hydroxy-3-oxopropionate reductase TERM 2228 2806259 - 2806284 + F 100 -15.5 -4.8622 | opp_overlap 2806259 2806254 GGCACCAGAATTCAA GCCGCTTCTGT TCAC GCAGAAGCGGC TTTTTCATTGGACGC TERM 2229 2806284 - 2806259 - f 82 -14.8 -3.25072 | opp_overlap 2806259, overlap 2806254 GGCACCAGAATTCAA GCCGCTTCTG TTCACG CAGAAGCGGC TTTTTCATTGGACGC TERM 2230 2807245 - 2807224 - g 74 -13 -3.18023 | opp_overlap 2807223 2807223 2807224, overlap 2807222 CTACGAGCAGGAAGA CGAGCGCG TGCTGC CGCGCTCG GTCGGTTTCAAGGCG Rpic_2694 2806454 - 2808313 + | dihydroxy-acid dehydratase TERM 2231 2808344 - 2808373 + T 76 -13.7 -3.10056 | opp_overlap 2808350, overlap 2808350 GCGCTCGATCGACGT AAAAAAGCCGCTC TTCG GAGCGGCTTTTTC TATTGCGTCGGTGCT TERM 2232 2808367 - 2808350 - T 100 -12.7 -5.09895 | opp_overlap 2808344 2808350 GATCGACGTAAAAAA GCCGCTC TTCG GAGCGGC TTTTTCTATTGCGTC TERM 2233 2808350 - 2808367 + T 100 -12.7 -5.10767 | opp_overlap 2808350, overlap 2808344 GATCGACGTAAAAAA GCCGCTC TTCG GAGCGGC TTTTTCTATTGCGTC Rpic_2695 2809202 - 2808396 - | aldo/keto reductase Rpic_2696 2810428 - 2809226 - | major facilitator superfamily MFS_1 TERM 2234 2810486 - 2810453 - H 71 -8.9 -3.70919 | gap 1, opp_overlap 2810459 2810460, overlap 2810454 2810459 TCCAAAGCGGAAGAA TGGAAAGCG-GGCAGA ACC TCTGCCGCGATTTCCG CAAACGTTTCAGCAA TERM 2235 2810647 - 2810632 - H 74 -3.2 -4.83169 | overlap 2810633 2810634 ACCTTTGCAGAAAAA CCCGTC CGTC GACGAA ACAGTCTTGATCGCC Rpic_2698 2810778 - 2811215 + | transcriptional regulator, MarR family Rpic_2699 2811220 - 2813037 + | Chloride channel core Rpic_2700 2814707 - 2813040 - | diguanylate cyclase TERM 2236 2813687 - 2813658 - G 78 -7.8 -4.3587 | opp_overlap 2813656 CACGAACAACACAAA GCCGATCATGCG GTTGCG CGCATGGTTGGC GATCTGCTGGCCCCA TERM 2237 2814667 - 2814638 - G 84 -13.5 -3.71873 | gap 1 CCACCGACAGCCAAA GCGCC-AGCGGCGC AAC GCGCAGCCAGGCGC CGTGCGACGACGTTG Rpic_2701 2815737 - 2814709 - | NAD-dependent epimerase/dehydratase TERM 2238 2815639 - 2815592 - G 70 -5.5 -4.21827 | gap 2, overlap 2815584 2815582 2815593 GCAAAGACGCGAAAA CGCGTGCGGAGCATCGCCAGGCA GCGT TGCCCGACG-T-CGCCGCAGCCG ACGATCAGCACGCGG Rpic_2702 2815793 - 2816842 + | oxidoreductase FAD/NAD(P)-binding domain protein TERM 2239 2817014 - 2817051 + F 100 -15.8 -4.59773 | gap 2, opp_overlap 2817022, overlap 2817022 TTCACAGGATTCGAC GATCACAAGGCCACGGGG CGAC CCCCGTGGCCTT-TG-TC TTTTTCCAACTCGCG TERM 2240 2817045 - 2817022 - f 100 -19.6 -3.44229 | opp_overlap 2817014 2817022 ATTCGACGATCACAA GGCCACGGGG CGAC CCCCGTGGCC TTTGTCTTTTTCCAA TERM 2241 2817022 - 2817045 + F 100 -19.6 -4.55887 | opp_overlap 2817022, overlap 2817014 ATTCGACGATCACAA GGCCACGGGG CGAC CCCCGTGGCC TTTGTCTTTTTCCAA TERM 2242 2817929 - 2817906 - g 83 -14.6 -3.18264 | CTGTGCACGGATGAA GTCGCCAGCT TTGA AGCCGGCGAC CAGGGCGGGACCTAC Rpic_2703 2817114 - 2818301 + | aminotransferase class-III Rpic_2704 2818383 - 2818859 + | GCN5-related N-acetyltransferase TERM 2243 2818909 - 2818880 - T 100 -18.7 -4.07568 | opp_overlap 2818886, overlap 2818886 GGGTCGCGCGCAAAA GAAAAAGCCCCGC AATC GCGGGGCTTTCTC GTGGTGCTTGAGGGT TERM 2244 2818903 - 2818886 - T 100 -14.1 -5.45802 | opp_overlap 2818886, overlap 2818880 CGCGCAAAAGAAAAA GCCCCGC AATC GCGGGGC TTTCTCGTGGTGCTT TERM 2245 2818886 - 2818903 + T 95 -14.1 -4.0044 | opp_overlap 2818886 2818880 CGCGCAAAAGAAAAA GCCCCGC AATC GCGGGGC TTTCTCGTGGTGCTT Rpic_2705 2819643 - 2818927 - | ABC transporter related Rpic_2706 2820436 - 2819660 - | ABC transporter related TERM 2246 2820098 - 2820131 + g 71 -7.3 -4.07885 | gap 1 CGCGCCGATCAGCCC CGCCTTGGTGCGCACG TGG CG-GCCCACCATGACG TTTTCCGCCGCGGTC Rpic_2707 2821577 - 2820450 - | inner-membrane translocator Rpic_2708 2822526 - 2821591 - | inner-membrane translocator TERM 2247 2822712 - 2822685 - R 100 -12 -5.26316 | opp_overlap 2822685 CGAGGCTATAAAAAA CGGCACCGCA GGGGTAGT CGCGGTGCCG TTTTTAGGGCGGATA TERM 2248 2822685 - 2822712 + r 95 -11.3 -4.57073 | gap 1, opp_overlap 2822685 CGAGGCTATAAAAAA CGGCACCGCAGG GGTAG TC-GCGGTGCCG TTTTTAGGGCGGATA Rpic_2709 2823942 - 2822737 - | Extracellular ligand-binding receptor TERM 2249 2824314 - 2824287 - R 93 -12 -4.33182 | opp_overlap 2824285 2824289, overlap 2824284 2824289 CGACGCACAAAACAA TACGGCCACTCC CGGA GAAGTGGCCGTC GATTCCTCAAAAGCG TERM 2250 2824312 - 2824289 - R 93 -14.6 -3.76183 | opp_overlap 2824285 2824289, overlap 2824287 2824284 ACGCACAAAACAATA CGGCCACTCC CGGA GAAGTGGCCG TCGATTCCTCAAAAG TERM 2251 2824349 - 2824367 + r 71 -7.4 -4.18762 | ATGCACCGCATTAGG GCGCAC CGTTTTT GTGCGC TTTTAAGTGGGCATT Rpic_2710 2825379 - 2824396 - | hydroxymethylbutenyl pyrophosphate reductase Rpic_2711 2825869 - 2825381 - | peptidylprolyl isomerase FKBP-type TERM 2252 2825705 - 2825728 + g 70 -8 -3.96327 | GGGCGCCATCTGGCC CTGGCCGAGC AGCA GCGTGGCCGG TTTGTCGTCGAAGGT Rpic_2712 2825989 - 2826663 + | DNA repair protein RadC TERM 2253 2826708 - 2826725 + F 70 -4.1 -4.65446 | overlap 2826700 2826709 GGCAATCCATCGATC TCGTTGA TTTG TCAGCGG TTTTGTGTGTATAAT Rpic_2713 2826844 - 2827077 + | ribosomal protein L28 Rpic_2714 2827091 - 2827261 + | ribosomal protein L33 TERM 2254 2827327 - 2827312 - f 100 -10.4 -4.81551 | opp_overlap 2827306 2827312 GACCGACAGCAAAAA CCCGCT TTCA AGCGGG TTTTTTGTTGCCTGC TERM 2255 2827312 - 2827327 + F 100 -10.4 -5.4833 | opp_overlap 2827312, overlap 2827306 GACCGACAGCAAAAA CCCGCT TTCA AGCGGG TTTTTTGTTGCCTGC TERM 2256 2827568 - 2827590 + G 73 -14.8 -2.52464 | CGCCAGCGATTGGGC GCAGGGCGGC ATT GCCGCCGTGC TCGATTCGGGCGACA Rpic_2715 2827440 - 2829041 + | L-aspartate oxidase TERM 2257 2829110 - 2829075 - T 80 -11.1 -3.82202 | gap 1 GATCCGCAAAGAGAA GTCGGTTGCGCGCACG TCCTT CGTGAGCGCG-CCGAC GGAGATTCGGTCCAC Rpic_2716 2829950 - 2829051 - | nicotinate-nucleotide pyrophosphorylase Rpic_2717 2831095 - 2829947 - | quinolinate synthetase complex, A subunit TERM 2258 2830211 - 2830241 + g 70 -11 -3.30124 | opp_overlap 2830214, overlap 2830199 2830214 2830226 GGTCGGCGCCTCGAT GAAGCGCTTGCCCG GGG CGGCCATGCGCATC TTGTGCAGGATGCCG TERM 2259 2831261 - 2831242 - R 100 -15 -5.10933 | TTACCCAAAAGAAAA GCCCCGCT GCGG AGCGGGGC TTCACCTATGAAACA Rpic_2718 2832473 - 2831283 - | fatty acid desaturase Rpic_2719 2834220 - 2832847 - | MscS Mechanosensitive ion channel TERM 2260 2833949 - 2833923 - G 80 -15.2 -3.04461 | CAGCCAGCCGGAACA CGCTGATCGGCA TGG TGCCGATCAGGG CGTAGCGCGCGCCCA TERM 2261 2834187 - 2834137 - G 84 -11.9 -4.0371 | opp_overlap 2834135 2834153, overlap 2834141 CAGCTGCCAGATAAA GCG-AGGGCCACCCAGATCGAAGAC AAT GTCGTCGATC-ATGTGGCCCAGCGC GATGTGGTTCAGGTT TERM 2262 2834182 - 2834141 - G 75 -14.5 -2.73529 | gap 1, opp_overlap 2834135 2834153, overlap 2834137 TGCCAGATAAAGCGA GGGCCACCCAGATCGAAGAC AAT GTCGTCGATC-ATGTGGCCC AGCGCGATGTGGTTC Rpic_2720 2834801 - 2834217 - | putative endonuclease protein Rpic_2721 2836195 - 2834798 - | Fmu (Sun) domain protein TERM 2263 2835610 - 2835640 + g 72 -13.2 -3.06796 | CGCGCAAGTCCAGCG GCGCCGGCGTGAGC CAT GCTTGCGCCAGTGC TTCGGTGAACTCCGC TERM 2264 2835917 - 2835905 - G 71 -10.5 -3.62096 | GCGCAGCACGGCAAA CGCCG CTT CGGCG ATGATGCCGCGCTCG Rpic_2722 2836842 - 2836192 - | phosphoribosylglycinamide formyltransferase TERM 2265 2837194 - 2837165 - H 73 -9.2 -3.87815 | gap 1 GCTCAGGGTGATAAA CCCGGC-CAGTCG GCCAT CGCCCGCGCCGGG TCGACACGCGTACAA TERM 2266 2837230 - 2837216 - H 84 -11.4 -4.02817 | CGCGTACAACAACAA GAGGGC TCT GCCCTC ACCGGGGAATAAGAA Rpic_2723 2837245 - 2837910 + | two component transcriptional regulator, LuxR family TERM 2267 2837935 - 2837957 + T 100 -16.2 -4.2803 | CTGGCCTCTTCAATC CGGCGCCGCC ATC GACGGCGCCG TTTTACATTCCCATC Rpic_2724 2839872 - 2837977 - | integral membrane sensor hybrid histidine kinase TERM 2268 2840771 - 2840729 - g 100 -11.9 -4.56597 | gap 1 GGGCTGGCCGAAAAA CCGCTGCCGGCCGT-CGCCA GCAT TGGCGTACGCCCGACGGTGG ACGACTCCGGCCGCG Rpic_2725 2840030 - 2841028 + | riboflavin biosynthesis protein RibF TERM 2269 2841561 - 2841527 - g 77 -12.9 -3.42574 | opp_overlap 2841556 GGAAGTGCAGGAGAA GGCGCGCG-CCTACGCC ACG GG-GCAGATCGCGCGCC AGAAGGCCGATTTCG TERM 2270 2842740 - 2842708 - g 82 -4.2 -5.09225 | overlap 2842709 2842719 AGCGCATCGAAAAAA GCGGCATCGAA-GCCT GGC AGACGCTCGAC-CCGC GCGAGCTGCTCGGCG Rpic_2726 2841138 - 2844017 + | isoleucyl-tRNA synthetase TERM 2271 2844178 - 2844190 + G 71 -10.5 -3.63991 | TTACGGCGAGTCGCG CCCGG TCA CCGGG TTCTTCAACCTGGTG Rpic_2727 2844017 - 2844541 + | lipoprotein signal peptidase Rpic_2728 2844549 - 2844926 + | alpha/beta hydrolase Rpic_2729 2845508 - 2844930 - | protein of unknown function DUF218 TERM 2272 2845558 - 2845535 - H 91 -8.1 -4.8622 | gap 1 GCTCTTAACGAAAAA CCCG-AGCGC CAGAC GCGCCGCGGG GCAAGCCGGTATCAT TERM 2273 2845594 - 2845606 + H 70 -10.5 -3.54475 | opp_overlap 2845593 2845594 CTGTTCAGCAGGAAG CCCGG GCA CCGGG TTGTATCCTGCCCGC TERM 2274 2846571 - 2846627 + G 75 -15.2 -2.74605 | gap 2, opp_overlap 2846578, overlap 2846603 2846616 CCTCTCTAACGTTCA CGCAGAACCCCGACATCCTGGCGGCTGT CGC AC-GCCGCCCGAATG-CGCCGTTCTGCG TCGGTTTTGCGGCCG Rpic_2730 2845658 - 2846863 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase Rpic_2731 2846860 - 2847906 + | Luciferase-like monooxygenase Rpic_2732 2847903 - 2848349 + | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 2275 2848368 - 2848396 + T 95 -16.1 -3.72576 | opp_overlap 2848373, overlap 2848373 TATCGCCCACATATA AAAAAGGCCCGGA ACT TCCGGGCCTTTTG TTTGGTGCGACAAAC TERM 2276 2848373 - 2848391 + T 100 -16 -4.93877 | opp_overlap 2848373, overlap 2848368 CCCACATATAAAAAA GGCCCGGA ACT TCCGGGCC TTTTGTTTGGTGCGA TERM 2277 2848391 - 2848373 - T 100 -16 -5.4251 | opp_overlap 2848373 2848368 CCCACATATAAAAAA GGCCCGGA ACT TCCGGGCC TTTTGTTTGGTGCGA Rpic_2733 2850703 - 2848415 - | ATP-dependent Clp protease, ATP-binding subunit clpA Rpic_2734 2851026 - 2850700 - | ATP-dependent Clp protease adaptor protein ClpS Rpic_2735 2851604 - 2851807 + | cold-shock DNA-binding domain protein TERM 2278 2851885 - 2851851 - f 74 -11.5 -3.53811 | opp_overlap 2851860, overlap 2851852 2851860 GCGATGGTGCCCAAA TGCAAAAAACCCGGC GACAT GCCGGGTTTTTTGTT GCCGGGGCGCACGAC TERM 2279 2851884 - 2851852 - f 77 -15 -2.72144 | opp_overlap 2851860, overlap 2851851 2851860 CGATGGTGCCCAAAT GCAAAAAACCCGGC GACAT GCCGGGTTTTTTGT TGCCGGGGCGCACGA TERM 2280 2851876 - 2851860 - f 100 -10.8 -5.22039 | opp_overlap 2851860, overlap 2851852 2851851 CCCAAATGCAAAAAA CCCGGC GACAT GCCGGG TTTTTTGTTGCCGGG TERM 2281 2851860 - 2851876 + F 100 -11.5 -5.4505 | opp_overlap 2851860 2851852 2851851 CCCAAATGCAAAAAA CCCGGCG ACA TGCCGGG TTTTTTGTTGCCGGG Rpic_2736 2851993 - 2852448 + | hypothetical protein TERM 2282 2852960 - 2852972 + G 72 -6.9 -4.25458 | opp_overlap 2852953 2852955, overlap 2852961 TCAGCGAAGACGTGG CCGCC AGC GGTGG TTTGTTGATGGCGTT TERM 2283 2852961 - 2852985 + G 74 -2.7 -4.73388 | opp_overlap 2852953 2852955, overlap 2852960 CAGCGAAGACGTGGC CGCCAGCGGTG GTT TGTTGATGGCG TTTTTCCTGCCGATT Rpic_2737 2852527 - 2853147 + | putative transmembrane protein Rpic_2738 2853504 - 2853698 + | hypothetical protein TERM 2284 2853767 - 2853780 + F 91 -5.2 -5.47218 | CGTTGGGGCTTGTTG GGGC TCGCCC GCCC TTTTTTTGCGTGCAA TERM 2285 2853848 - 2853882 + F 73 -13.7 -2.78679 | gap 1, opp_overlap 2853853, overlap 2853853 GGCGGCGCGAAATAA AAAAACCCCGGCCAGC CGAA GCTG-CCGGGGTTTTC CTTTGCATCACGGCC TERM 2286 2853877 - 2853853 - f 100 -13.6 -5.95539 | gap 1, opp_overlap 2853853 2853848 CGCGAAATAAAAAAA CCCCGGCCAGC CGAA GCTG-CCGGGG TTTTCCTTTGCATCA TERM 2287 2853853 - 2853877 + F 100 -13.6 -4.56914 | gap 1, opp_overlap 2853853, overlap 2853848 CGCGAAATAAAAAAA CCCCGGCCAGC CGAA GCTG-CCGGGG TTTTCCTTTGCATCA TERM 2288 2854833 - 2854802 - g 71 -9.4 -3.71998 | GACTGACGAAGACAA GGCTGATCTTCGGG CGAT CCGGAAGATCGACC CCACGATCCCCGCGA Rpic_2739 2854134 - 2854862 + | putative transmembrane protein TERM 2289 2855647 - 2855622 - T 90 -14.8 -3.51232 | opp_overlap 2855622, overlap 2855618 GGCCGCTCAAAGTAA TAGCCCTCGG ACATCG CCGAGGGCTA TTGGTACTGCGCAGG TERM 2290 2855622 - 2855647 + T 82 -14.8 -3.21099 | opp_overlap 2855622 2855618 GGCCGCTCAAAGTAA TAGCCCTCGG ACATCG CCGAGGGCTA TTGGTACTGCGCAGG Rpic_2741 2856303 - 2855779 - | hypothetical protein TERM 2291 2856435 - 2856424 - H 74 -5.8 -4.47551 | opp_overlap 2856423 ATTTAATTGACAAAA TCCG CCAT CGGA ATTAAATTATTTCGG Rpic_2742 2856600 - 2857139 + | hypothetical protein Rpic_2743 2857654 - 2857136 - | hypothetical protein TERM 2292 2857782 - 2857737 - R 89 -12.7 -4.08945 | gap 1, opp_overlap 2857746 2857760 2857761, overlap 2857761 ACCAGGTCTCCAAAA GGCCCCAAACCG-TGGAAACCA AAG TGGTTACCAGCGGTTTGGAAAC CATCTTTTATGTACC Rpic_2744 2857970 - 2857800 - | hypothetical protein Rpic_2745 2859762 - 2858263 - | hypothetical protein Rpic_2746 2860353 - 2859802 - | hypothetical protein Rpic_2747 2860953 - 2860492 - | hypothetical protein Rpic_2748 2861285 - 2860950 - | hypothetical protein TERM 2293 2861051 - 2861034 - G 77 -12.7 -3.32844 | GTTGGCATGTGAGAA GCCGTCG CTAT CGACGGC AATGACCCGATCCGA TERM 2294 2861237 - 2861265 + g 75 -9.6 -4.01411 | gap 1 CATCGGTGGTCTTCT GGGTCGC-ACTCT TGCA GGAGTTGCGGCCC TTTCCGTTTTTGGTG Rpic_2749 2861500 - 2861297 - | phage transcriptional regulator, AlpA TERM 2295 2861549 - 2861507 - R 75 -7.7 -4.18018 | gap 2, opp_overlap 2861507 2861505 TGCGGTCATGCAAAA GCTCCGTCGGCTGCCTCGGGA CCA TCCCGAAGCT-CTG-CGGAAC TGTTTGCATTAAGAA Rpic_2750 2862380 - 2861592 - | hypothetical protein TERM 2296 2861619 - 2861639 + g 79 -11.1 -3.86194 | CCTCACAGTTCTCCG CCAGCGGTG ATC CGCCGTTGG TTTCTGGGGCCGCTT Rpic_2751 2863725 - 2862478 - | integrase family protein TERM 2297 2863877 - 2863836 - R 88 -19.7 -2.91681 | gap 1, opp_overlap 2863843 2863861 2863864, overlap 2863843 CTGGAACTCTAGAGA CAAAAAACCCCGGCG-ACAC TAA GTGTACACCGGGGTTTTCTG GACTTTTCCGGAACA TERM 2298 2863843 - 2863870 + r 95 -12 -4.46581 | gap 1, opp_overlap 2863836 2863843, overlap 2863861 2863864 TCTAGAGACAAAAAA CCCCGGCG-ACAC TAA GTGTACACCGGGG TTTTCTGGACTTTTC TERM 2299 2863870 - 2863843 - R 100 -14.2 -5.4251 | gap 1, opp_overlap 2863843 2863861 2863864, overlap 2863836 TCTAGAGACAAAAAA CCCCGGCG-ACAC TAA GTGTACACCGGGG TTTTCTGGACTTTTC Rpic_2752 2865155 - 2863905 - | isocitrate dehydrogenase, NADP-dependent TERM 2300 2863997 - 2864009 + g 72 -3.4 -4.65895 | opp_overlap 2864006 CATACGTGACCTTCT TCGA CAGGA TCGA TTTTTCGATCGACGA TERM 2301 2865248 - 2865211 - R 76 -14.8 -2.64616 | gap 1, overlap 2865213 TGGGGATTGACAGCA CAGCGCGCCGCTCACGG GTTGG CCG-GCGTGGCGCGCTG CAGTGAACTGGCGAT Rpic_2753 2866030 - 2865416 - | hypothetical protein Rpic_2754 2866177 - 2866389 + | conserved hypothetical signal peptide protein TERM 2302 2866455 - 2866436 - f 93 -7.8 -5.03994 | opp_overlap 2866436 GCCGATACAGAAAAA GCAGGTGC TTAT GCATCTGC TTTTTTTTCGCCCTC TERM 2303 2866436 - 2866455 + F 100 -10 -5.76949 | opp_overlap 2866436 GCCGATACAGAAAAA GCAGGTGC TTAT GCATCTGC TTTTTTTTCGCCCTC Rpic_2755 2866576 - 2868090 + | metallophosphoesterase TERM 2304 2869095 - 2869109 + G 73 -5.6 -4.36914 | overlap 2869075 GTGTTCCGCACGCTG CGCGAC ACG GTGGCG TTTTATGCCACCCGC Rpic_2756 2868087 - 2869427 + | putative signal peptide protein TERM 2305 2869485 - 2869431 - f 90 -14.8 -3.63341 | opp_overlap 2869481, overlap 2869432 AACACGCGGTAACAA CTTCGTCGCACAGCCCGCCGCCGT TTCATTG ACGGCGGCGGGCCGAGTGCCGATC ATGGAGCGTTTCTTT TERM 2306 2869484 - 2869432 - f 86 -18.3 -2.77522 | opp_overlap 2869481, overlap 2869431 ACACGCGGTAACAAC TTCGTCGCACAGCCCGCCGCCGT TTCATTG ACGGCGGCGGGCCGAGTGCCGAT CATGGAGCGTTTCTT TERM 2307 2869481 - 2869493 + F 70 -3.3 -4.67048 | opp_overlap 2869432 2869431 CGGCGGGCCGAGTGC CGATC ATG GAGCG TTTCTTTTCCGATCC Rpic_2757 2869518 - 2869979 + | protein of unknown function DUF192 Rpic_2758 2870018 - 2870983 + | beta-lactamase domain protein Rpic_2759 2871447 - 2870980 - | conserved hypothetical signal peptide protein Rpic_2760 2872448 - 2871483 - | transcriptional regulator, LysR family Rpic_2761 2873421 - 2872513 - | transcriptional regulator, LysR family TERM 2308 2872733 - 2872693 - G 77 -14.8 -2.87931 | gap 2, opp_overlap 2872701 2872730 CGTATCGCCCACAGA GCG-CGCCATGCGG-GCC ACGCCCA GGCCCCGCACGGCGGCGC GGGCGCGCATTTCGG TERM 2309 2872952 - 2872927 - G 72 -11.1 -3.51924 | CGGCGATGCATACAA GCCGCGCGG GATGAGCA CCACGCGGC GCGCCACGAGCGACG TERM 2310 2873971 - 2873927 - g 86 -3.5 -5.16237 | gap 1, overlap 2873928 2873929 2873940 AAGCCGATCAAAAAA GCCTACGAGCAGAGGCCTGA GGCCGT CCAGGCCTG-GCTCGAAGAT GAATACCCCGCCATC Rpic_2762 2873489 - 2874547 + | ISXo7 transposase TERM 2311 2874651 - 2874636 - g 71 -10.4 -3.63968 | opp_overlap 2874635 2874634 CTGCAAATCCTCAAA CCCGCA TCCC TGCGGG CGTTTCCCCATTTTT TERM 2312 2875057 - 2875083 + G 71 -13 -3.04144 | overlap 2875051 2875055 CCGACGAACGCATTC CGCCGATGCTGA TGT TCAGCGTCGGCC TGTTCGGACTGACCA Rpic_2763 2874615 - 2876171 + | major facilitator superfamily MFS_1 Rpic_2764 2876589 - 2876179 - | DoxX family protein TERM 2313 2876448 - 2876407 - G 77 -12.3 -3.61654 | gap 1, overlap 2876408 GATACCCACGCCAAA CTCCATGACGACGGCAACCG CTG CGGCCACCATCGGCATGG-G CGCGCCCGTGCTGGC Rpic_2765 2877509 - 2876625 - | transcriptional regulator, LysR family Rpic_2766 2877634 - 2879262 + | Gamma-glutamyltransferase Rpic_2767 2879364 - 2880680 + | major facilitator superfamily MFS_1 TERM 2314 2880788 - 2880768 - f 70 -12.6 -2.90723 | opp_overlap 2880766 TCATGTTCAACGACA TGGCGACG CGGGC CGTCGCCA CCTTCCATCATGGCG Rpic_2768 2880798 - 2881157 + | hypothetical protein TERM 2315 2881363 - 2881378 + G 70 -7.5 -3.96624 | CATCGCGGACGCTTG CGGCG AGCGCA CGCCG TTTCTGATCGGCGTC Rpic_2769 2881166 - 2882056 + | dihydrodipicolinate synthase Rpic_2770 2882657 - 2882067 - | putative transmembrane protein TERM 2316 2882135 - 2882171 + g 72 -13 -3.11634 | gap 1, overlap 2882140 GCGTACCGCGATGAT GACGGCG-CGCGTTGGC CGGC GCCGGCGCGTCGTTGTC TTCCATCGTCTCGCG TERM 2317 2882140 - 2882166 + g 74 -10.1 -3.69702 | gap 1, overlap 2882135 CCGCGATGATGACGG CG-CGCGTTGGC CGGC GCCGGCGCGTCG TTGTCTTCCATCGTC TERM 2318 2882371 - 2882413 + g 71 -12.7 -3.03124 | gap 2 ATGGCAACGCTCATC GCATCGCCGGCCTGTGCGGCC GAC GGC-GTGT-GGCCGGCGAGGC TCTTCACCCATGGCG TERM 2319 2883403 - 2883424 + G 72 -6.5 -4.20783 | opp_overlap 2883407, overlap 2883399 ATTGTCCGGCCGACA CCAAGGTCT ACCT GGACCTCGG TTTCTTCGATGAACT Rpic_2771 2882976 - 2883863 + | protein of unknown function zinc metallopeptidase putative Rpic_2772 2884617 - 2883871 - | short-chain dehydrogenase/reductase SDR Rpic_2773 2884756 - 2886231 + | transcriptional regulator, AraC family Rpic_2774 2886245 - 2886793 + | methylated-DNA/protein-cysteine methyltransferase TERM 2320 2887316 - 2887291 - g 70 -5.9 -4.22214 | opp_overlap 2887301, overlap 2887292 ATCGACGCAAAACAA GGCGGCGTGGC GGTG GCCGCGGCGCT GTCCGCCACCGTGCT TERM 2321 2887743 - 2887722 - g 95 -7.9 -5.00616 | CGCTCCGGGAAAAAA GGCCCCTGC AAAT GCAGCGACC ACAGCAAACGAGAAG Rpic_2775 2886853 - 2887785 + | protein of unknown function DUF6 transmembrane TERM 2322 2888171 - 2888187 + F 83 -4.3 -5.14682 | TCAAATTCGGGTATC TCCGCGC GTT GTGCAGA TTTTCTTTGTTATGC Rpic_2776 2888336 - 2889646 + | HipA domain protein Rpic_2777 2889950 - 2889675 - | hypothetical protein Rpic_2778 2890185 - 2891600 + | amidohydrolase TERM 2323 2891616 - 2891649 + F 100 -14.5 -4.61873 | overlap 2891636 GCCGGCGTCGATGTG GGCGCGGTCGGCC CCGGTACC GGACGGCCGCGCC TTTTGATTTCTCAGG Rpic_2779 2891675 - 2892487 + | Arogenate dehydratase Rpic_2780 2892703 - 2892494 - | TetA TERM 2324 2892678 - 2892640 - G 75 -15.2 -2.70932 | CCGGCGGCCCAATCA TGGCGGCCACGCTGGCGA GGC TCGCCAGCGCGCCCTGCA ATTCGCCCTGCCCAT Rpic_2781 2893534 - 2892728 - | hypothetical protein TERM 2325 2893787 - 2893807 + H 75 -2.5 -5.00616 | overlap 2893806 CAGGTTGCCGCGCTT GAAGGGCCA AAA TTGTTCTTC TTTTTTGAACAAAGA Rpic_2782 2893941 - 2894213 + | conserved hypothetical signal peptide protein TERM 2326 2894301 - 2894316 + F 100 -11.8 -5.44119 | CACCGGCTTACCTAG GCGGCC TTTT GGCCGC TTTTTTTCGCCTACA Rpic_2783 2894484 - 2895695 + | metal dependent phosphohydrolase Rpic_2784 2895719 - 2897233 + | Substrate-binding region of ABC-type glycine betaine transport system Rpic_2785 2897298 - 2898065 + | protein of unknown function DUF81 Rpic_2786 2898234 - 2898677 + | hypothetical protein TERM 2327 2898731 - 2898753 + T 100 -19.2 -4.78848 | TGCTCAGTCTCCGAG CGCCCGATGC ACC GCATCGGGCG TTTTGTATTTCAAGG Rpic_2787 2899546 - 2898719 - | Integrase catalytic region Rpic_2788 2899947 - 2899549 - | ISPsy11, transposase OrfA TERM 2328 2900037 - 2900018 - R 100 -10.7 -5.52384 | opp_overlap 2900018 CGCCCATGAAAAAAA GCCGACG TTTGCG CGTCGGC TTTTTTCATTGCGGC TERM 2329 2900018 - 2900037 + r 100 -11.4 -5.26875 | opp_overlap 2900018 CGCCCATGAAAAAAA GCCGACGT TTGC GCGTCGGC TTTTTTCATTGCGGC Rpic_2789 2901463 - 2900063 - | Citrate transporter Rpic_2790 2901990 - 2901616 - | hypothetical protein TERM 2330 2901777 - 2901753 - G 93 -14.2 -4.08394 | ACACGCTGCCGAAAA CCGGCGCCGG GTACA CCGGCGCTGG GTAATAGGCCGGCCC Rpic_2791 2902171 - 2903502 + | major facilitator superfamily MFS_1 TERM 2331 2903536 - 2903573 + T 100 -15.6 -4.07568 | opp_overlap 2903532 2903542, overlap 2903539 2903542 AAACGAAACTAGGCC GAACAACGGCCGGTGG ATCATC CCACCGGCCGTTCGTC TTTTGCGGCAAGCAA TERM 2332 2903539 - 2903571 + T 93 -15.7 -3.63744 | gap 1, opp_overlap 2903532 2903542, overlap 2903536 2903542 CGAAACTAGGCCGAA C-AACGGCCGGTGG ATCATC CCACCGGCCGTTCG TCTTTTGCGGCAAGC TERM 2333 2903542 - 2903567 + T 100 -17.6 -3.53779 | opp_overlap 2903532 2903542, overlap 2903539 2903536 AACTAGGCCGAACAA CGGCCGGTGG ATCATC CCACCGGCCG TTCGTCTTTTGCGGC TERM 2334 2903567 - 2903542 - T 100 -18.3 -3.64259 | opp_overlap 2903542 2903539 2903536, overlap 2903532 AACTAGGCCGAACAA CGGCCGGTGGA TCAT CCCACCGGCCG TTCGTCTTTTGCGGC Rpic_2792 2904305 - 2903553 - | NAD-dependent epimerase/dehydratase Rpic_2793 2904617 - 2904901 + | histone family protein DNA-binding protein TERM 2335 2904950 - 2904967 + T 100 -12.7 -5.13722 | CCGGGAGACTTGCAA GGGACCC TACG GGGTCCC TTTTCTTTTGGTGCA Rpic_2794 2905586 - 2905005 - | protein of unknown function DUF886 TERM 2336 2905470 - 2905429 - G 76 -9.3 -4.09739 | gap 1, opp_overlap 2905449 TCAATGCCGGCAAAA CGCGAGAACGGC-CCGGCCG CAT CGACCTGCGCGGTGCTCACG CGCCAGTCGAAATTG Rpic_2795 2906530 - 2905583 - | formiminoglutamase Rpic_2796 2907327 - 2906527 - | ABC transporter related TERM 2337 2906635 - 2906590 - G 90 -16.1 -3.53012 | gap 1 CTTGGGCTCGCCAAA GATGACCGACGGCGGC-CCGGC TTC GACGATGCCGCCGCCGTCCATC ACCACCACCACGTCG Rpic_2797 2907992 - 2907324 - | polar amino acid ABC transporter, inner membrane subunit Rpic_2798 2908772 - 2908008 - | extracellular solute-binding protein family 3 Rpic_2799 2909605 - 2908835 - | transcriptional regulator, IclR family Rpic_2800 2910245 - 2909715 - | hypothetical protein Rpic_2801 2910498 - 2911043 + | protein of unknown function DUF1486 Rpic_2802 2911190 - 2912017 + | putative transmembrane protein TERM 2338 2912243 - 2912262 + T 72 -13.6 -2.50994 | opp_overlap 2912243, overlap 2912242 CGACCAAAAGAAAAA GCCCTCTG CTTG CAGAGGGC CTTGATCCAATTGCG TERM 2339 2912262 - 2912243 - T 100 -13.6 -5.50723 | opp_overlap 2912243 2912242 CGACCAAAAGAAAAA GCCCTCTG CTTG CAGAGGGC CTTGATCCAATTGCG Rpic_2803 2913069 - 2912368 - | Superoxide dismutase Rpic_2804 2914503 - 2913094 - | exodeoxyribonuclease VII, large subunit Rpic_2805 2915580 - 2916200 + | MotA/TolQ/ExbB proton channel Rpic_2806 2916229 - 2916657 + | Biopolymer transport protein ExbD/TolR TERM 2340 2917063 - 2917028 - g 71 -11.8 -3.28924 | opp_overlap 2917056 CACTCCCGCGCAGAA GACGTCGGCGATGAAC CGCT GCTCATCGCCCGCGCC ACCGATCTGCCGGTG Rpic_2807 2916689 - 2917738 + | tetraacyldisaccharide 4'-kinase Rpic_2808 2917808 - 2917996 + | protein of unknown function DUF343 TERM 2341 2918105 - 2918079 - g 71 -7.8 -4.15044 | CGGCTGCCCAACAAA CCGCTGGCCGAC ATC GACGGCAAGCCG ATGGTGGTGCGCGTG TERM 2342 2918379 - 2918354 - g 73 -12.5 -3.36175 | overlap 2918326 2918355 AACGCTGATCGACAA CGTGGCCGCGC ATCT GCGCGACCACC CCGACTGCGCCATCG TERM 2343 2918378 - 2918355 - g 77 -16 -2.61383 | overlap 2918326 2918354 ACGCTGATCGACAAC GTGGCCGCGC ATCT GCGCGACCAC CCCGACTGCGCCATC Rpic_2809 2918013 - 2918819 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase TERM 2344 2918932 - 2918897 - f 74 -11.9 -3.44051 | gap 2 TCGCGAGGACGACAA GCCGCATGACGGCGCCC ACGC AGGCGCCA-CA-GCGGC GACAGGGAGACAAAT Rpic_2810 2919165 - 2919833 + | Nucleoside-triphosphate--adenylate kinase TERM 2345 2919887 - 2919864 - f 71 -9.5 -3.73088 | opp_overlap 2919865, overlap 2919865 ACACGCCAGGAAGAA CGGCGCCTC GATTAT GAGGCGCCT TTTTTTTTGCGCGAT TERM 2346 2919865 - 2919886 + F 100 -13.7 -6.06723 | opp_overlap 2919865 2919864 CACGCCAGGAAGAAC GGCGCCTCG ATTA TGAGGCGCC TTTTTTTTTGCGCGA Rpic_2811 2919993 - 2920751 + | short-chain dehydrogenase/reductase SDR Rpic_2812 2921662 - 2920769 - | transcriptional regulator, LysR family TERM 2347 2920845 - 2920869 + g 73 -9.3 -3.90112 | gap 1, opp_overlap 2920835 AACGACCGGTCATGC CGACGCGCCA GCACGA TGGCGCG-CG TTTCCTTAGGGGACA TERM 2348 2921850 - 2921863 + G 75 -3.7 -4.63218 | CGCCATGCTCGTGAT GGTCG CGCT CGCCC TTTTCTTCCCGGCGC Rpic_2813 2921782 - 2922813 + | Bile acid:sodium symporter Rpic_2814 2923359 - 2922814 - | GCN5-related N-acetyltransferase Rpic_2815 2924883 - 2923363 - | N-acetylmuramoyl-L-alanine amidase TERM 2349 2923704 - 2923726 + g 91 -11.2 -4.56133 | TCGAGCCGAGGTTCG CGCCGCCGAT CAT GTCGGCAGCG TTTTCCTTGTTGGCG Rpic_2816 2925455 - 2924877 - | protein of unknown function UPF0079 Rpic_2817 2925472 - 2926629 + | iron-sulfur cluster binding protein TERM 2350 2926744 - 2926730 - f 73 -4.2 -4.71307 | overlap 2926731 TAAAAACCAAACAAA GTGTGC CTA GCACAG AGCCATGAATGCCTG Rpic_2818 2926954 - 2927538 + | putative lipoprotein transmembrane Rpic_2820 2928701 - 2929177 + | methylated-DNA/protein-cysteine methyltransferase TERM 2351 2929848 - 2929808 - g 71 -10.4 -3.58343 | gap 2, opp_overlap 2929835 2929838 TGCAGGATCGCCAAA CGGGCCGCACCGCGCTGCTC GGC GAGC-GCACGGCG-GACGCG CTGTTCGTCACCGCG Rpic_2821 2929174 - 2930118 + | tyrosine recombinase XerD Rpic_2822 2930141 - 2930632 + | ybaK/ebsC protein Rpic_2823 2930703 - 2931326 + | protein of unknown function DUF205 Rpic_2824 2932339 - 2931323 - | transcriptional regulator, AraC family TERM 2352 2931566 - 2931592 + g 75 -4.4 -4.59773 | gap 1, opp_overlap 2931550 2931549, overlap 2931552 CCGCAGCAGCGTCCG CTCGCTGGTCG AGGCGG CGGCT-GCGAG TTTTTCCAGATCAAA Rpic_2825 2932500 - 2934887 + | peptidase S45 penicillin amidase TERM 2353 2934935 - 2934905 - T 86 -17.7 -2.71712 | gap 1, opp_overlap 2934910, overlap 2934910 TTTGCCGCTGCAAAT GC-AAACGCCCCGC TCGT GCGGGGCGTTTTGC TTGGAAAGCGCGTCG TERM 2354 2934929 - 2934910 - T 95 -16.4 -3.84451 | opp_overlap 2934910, overlap 2934905 CGCTGCAAATGCAAA CGCCCCGC TCGT GCGGGGCG TTTTGCTTGGAAAGC TERM 2355 2934910 - 2934929 + T 100 -16.4 -4.4078 | opp_overlap 2934910 2934905 CGCTGCAAATGCAAA CGCCCCGC TCGT GCGGGGCG TTTTGCTTGGAAAGC Rpic_2826 2935439 - 2934954 - | protein of unknown function DUF520 Rpic_2827 2935546 - 2936574 + | UDP-N-acetylenolpyruvoylglucosamine reductase Rpic_2828 2936724 - 2937041 + | protein of unknown function DUF1255 Rpic_2829 2937194 - 2938531 + | Argininosuccinate synthase TERM 2356 2938556 - 2938583 + T 100 -18.5 -5.28176 | opp_overlap 2938556 GCTTCAAGGCAAAAA GGCCGCTCCGA CGTCAA TCGGAGCGGCC TTTTTTATGCCTGCA TERM 2357 2938583 - 2938556 - T 100 -19.2 -4.74103 | opp_overlap 2938556 GCTTCAAGGCAAAAA GGCCGCTCCGAC GTCA ATCGGAGCGGCC TTTTTTATGCCTGCA Rpic_2830 2939544 - 2938618 - | ornithine carbamoyltransferase Rpic_2831 2939913 - 2940236 + | hypothetical protein TERM 2358 2940322 - 2940290 - T 89 -13 -4.08394 | gap 1, opp_overlap 2940298, overlap 2940292 2940298 ACAGCGCGCGCAAAA TACAAAAAGCCCGTC CGAA GACGGGCTTTTT-TA TCGTCGGAGCGCGAC TERM 2359 2940321 - 2940292 - T 88 -13.7 -3.63922 | opp_overlap 2940298, overlap 2940290 2940298 AGCGCGCGCAAAATA CAAAAAGCCCGTC CGAA GACGGGCTTTTTT ATCGTCGGAGCGCGA TERM 2360 2940298 - 2940315 + T 100 -12.7 -5.31275 | opp_overlap 2940292 2940290 2940298 CGCAAAATACAAAAA GCCCGTC CGAA GACGGGC TTTTTTATCGTCGGA TERM 2361 2940315 - 2940298 - T 100 -12.7 -5.28983 | opp_overlap 2940298, overlap 2940292 2940290 CGCAAAATACAAAAA GCCCGTC CGAA GACGGGC TTTTTTATCGTCGGA Rpic_2832 2940647 - 2940381 - | ribosomal protein S20 TERM 2362 2940895 - 2940927 + H 71 -9.7 -3.70902 | CGGGCGCGAACCCCG CATGGCGCCGTCGGT CAG ACCGCCATCGCCGTG TTTGCCTCTCAGGCG TERM 2363 2941429 - 2941476 + G 86 -15.7 -3.21099 | gap 2 ATTCTGAATACGTGG CGGCA-GTTC-GCGGTGCCGGCG TTCA CGCCGGTGCTGCTGAACCTGTCG TTCATCGTGGCAGCG Rpic_2833 2940925 - 2942517 + | integral membrane protein MviN TERM 2364 2942522 - 2942508 - f 88 -6.4 -5.0133 | CACGTTCCGAAAAAA GGCCAT CTG ATGACC ACTAAAGTCCTCGAT TERM 2365 2942688 - 2942678 - g 74 -2.4 -4.72272 | overlap 2942680 CGCGCGGATCAAAAA CCGC ATC GCCG AGGGCACGCCCGCCA Rpic_2834 2942517 - 2943362 + | hypothetical protein TERM 2366 2943383 - 2943395 + T 70 -10.5 -3.55622 | ACTTCTGCGCGACGG CGCCG CGA CGGCG TTTGAGCAACTTCCA Rpic_2835 2944013 - 2943366 - | SNARE associated Golgi protein Rpic_2836 2944103 - 2946046 + | DNA mismatch repair protein MutL Rpic_2837 2946052 - 2947029 + | tRNA delta(2)-isopentenylpyrophosphate transferase Rpic_2838 2947026 - 2947556 + | GCN5-related N-acetyltransferase Rpic_2839 2947637 - 2948377 + | hypothetical protein Rpic_2840 2948388 - 2949044 + | 2OG-Fe(II) oxygenase Rpic_2841 2949060 - 2949710 + | DNA-3-methyladenine glycosylase II Rpic_2842 2949766 - 2950032 + | periplasmic nitrate reductase, NapE protein TERM 2367 2950059 - 2950035 - f 73 -10 -3.68619 | gap 1, opp_overlap 2950050, overlap 2950037 GCCAACGCATTGAAA TACGCCCCCGG GGGT CCGAGGGCG-A GTCGGGTTGTATGTT TERM 2368 2950058 - 2950037 - f 90 -15.1 -3.42283 | opp_overlap 2950050, overlap 2950035 CAACGCATTGAAATA CGCCCCCGG GGGT CCGAGGGCG AGTCGGGTTGTATGT TERM 2369 2950109 - 2950097 - f 84 -6.2 -4.9218 | CACTGATTAGAAAAA GGCG TTCAT CGCC AAAACAGGGTCATGC Rpic_2843 2950121 - 2950465 + | NapD family protein TERM 2370 2950559 - 2950545 - gf 78 -10 -3.91897 | CTCGTCACCGACAAA GAGCTG ACG CAGCTC AAGTGGTCGAAGGCG TERM 2371 2950885 - 2950899 + GF 72 -3.4 -4.62471 | overlap 2950887 TCGGCATGTTCGGCT CGGGTC AAT GGACCG TTTTTGAGGGTTACG TERM 2372 2952230 - 2952215 - gf 72 -3.2 -4.59773 | CCTCATCGCCAAAAA GCCG GAGCTGCG CGGC AAGACCCTCTACGAC Rpic_2844 2950437 - 2952953 + | periplasmic nitrate reductase, large subunit Rpic_2845 2952994 - 2953497 + | Nitrate reductase cytochrome c-type subunit (NapB) Rpic_2846 2953510 - 2954097 + | periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family Rpic_2847 2954150 - 2954782 + | heme exporter protein CcmA Rpic_2848 2954779 - 2955447 + | heme exporter protein CcmB Rpic_2849 2955452 - 2956240 + | heme exporter protein CcmC Rpic_2850 2956237 - 2956389 + | hypothetical protein TERM 2373 2956475 - 2956487 + G 81 -3.3 -5.06414 | GCTGAATGCATTCCG CTCCA ATC TGGTG TTTTTCTTCAGCCCC Rpic_2851 2956386 - 2956856 + | CcmE/CycJ protein TERM 2374 2957213 - 2957264 + G 75 -3 -4.78753 | gap 3, overlap 2957216 2957248 2957248 CAACTGCCGTTGCCC GTGGTGGCGCGCGTGCTG--GGCGT GATGG GCGCCATCAGCACGGG-GCTGCTGC TTTTCTTGCTGTTCG TERM 2375 2957670 - 2957653 - g 76 -9.8 -4.18018 | GGCGGTGACGGAAAA GCGCGG CGTGTT CCGCGC ATGGACGGCGCTGCT Rpic_2852 2956853 - 2958871 + | cytochrome c-type biogenesis protein CcmF TERM 2376 2958884 - 2958900 + G 71 -10.1 -3.59279 | overlap 2958885 TGAAGCTGCGCTACG TGCTGCC GCT GGCAGCG TTCCTTGTTCTGGTG Rpic_2853 2958868 - 2959410 + | periplasmic protein thiol/disulphide oxidoreductase DsbE Rpic_2854 2959403 - 2959873 + | cytochrome C biogenesis protein Rpic_2855 2959870 - 2960769 + | cytochrome c-type biogenesis protein CcmI TERM 2377 2960778 - 2960752 - f 85 -6.5 -4.77036 | gap 1, opp_overlap 2960752, overlap 2960756 GCCGATCAGCAAAAA GCACCCCGCGTC AAGT GACGCGTG-CGC TGCTTCGAATTTGAC Rpic_2856 2960865 - 2961950 + | transcriptional regulator, AraC family Rpic_2857 2962193 - 2962699 + | putative lipoprotein TERM 2378 2962729 - 2962747 + T 100 -11.7 -5.7946 | opp_overlap 2962729 ACGCGCATAAAAAAA CCGCCGA ACACA TCGGCGG TTTTTTTGTTGAGGC TERM 2379 2962747 - 2962729 - T 100 -11.7 -5.61596 | opp_overlap 2962729 ACGCGCATAAAAAAA CCGCCGA ACACA TCGGCGG TTTTTTTGTTGAGGC Rpic_2858 2963828 - 2962773 - | phosphoribosylformylglycinamidine cyclo-ligase TERM 2380 2963943 - 2963891 - H 100 -11.4 -4.91712 | gap 1, opp_overlap 2963931 GGGAAGTCACAAAAA TCGGACCCGCCG-GTCCAGTAAAAT CGCG ATTTTACCGGATGCGGCCGTCCCGA TGGCCGCTTTTCCGA TERM 2381 2963931 - 2963950 + H 84 -11.4 -4.12188 | opp_overlap 2963891 GCGATTTTACCGGAT GCGGCCGT CCCG ATGGCCGC TTTTCCGACTCCTCC TERM 2382 2964174 - 2964186 + G 75 -3.3 -4.78107 | overlap 2964170 CCATCGCGTACCGCG CGTGC TGG GCGTG TTTTTGATGATCCTG TERM 2383 2964707 - 2964718 + G 76 -5.8 -4.57569 | GTTTTGACGTGGCGC TGCC GGTG GGCA TTTTTACGGGGCTGG Rpic_2859 2963992 - 2965062 + | protein of unknown function UPF0118 TERM 2384 2965195 - 2965173 - g 80 -14.2 -3.30124 | CCCGACCTTCGACAA CTTCGTCGCC ACC GGCAACGAAG AGGCGGTGCTGCGCC Rpic_2860 2965111 - 2965812 + | hypothetical protein Rpic_2861 2965865 - 2966539 + | HAD-superfamily subfamily IB hydrolase, TIGR01490 Rpic_2862 2966552 - 2968117 + | poly(A) polymerase Rpic_2863 2968114 - 2968629 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 2385 2969132 - 2969156 + G 72 -6.4 -4.21142 | gap 1, opp_overlap 2969134, overlap 2969135 GGAGTATCTCGAACG CATCTGCGCCG CATA CGGCG-AGCTG TTTCTGTATTACGAT Rpic_2864 2968659 - 2969303 + | putative deoxyguanosine kinase (dGuo kinase) (DGK) protein Rpic_2865 2969360 - 2970178 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase Rpic_2866 2970190 - 2970897 + | binding-protein-dependent transport systems inner membrane component Rpic_2868 2973434 - 2971536 - | para-aminobenzoate synthase, subunit I Rpic_2867 2970894 - 2971592 + | ABC transporter related TERM 2386 2972142 - 2972115 - GT 72 -8.4 -4.08317 | gap 1 GAACGGGAAACCAAA GGCTGCCGCTGAA CGC TCCAGCCGC-GCC AGATGCCAATCCAGC TERM 2387 2972922 - 2972874 - GT 74 -12.5 -3.15544 | gap 2, overlap 2972847 2972846 2972919 2972920 CGGCAGCCCGATGAA GGCGCCGTA-CGGCACCGGC-TG ACGCG CACGCAGGCGCCGATACAACGCC GCTGGCGCGCCAAAC TERM 2388 2973558 - 2973580 + Tr 73 -10.5 -3.61398 | CAGTGCCAAGCTCGG GCCGCGCGG TACCT TTGCGCGGC TTCTTACGAGGAGAA Rpic_2869 2974732 - 2973584 - | chaperone protein DnaJ TERM 2389 2974741 - 2974753 + r 74 -3.3 -4.76041 | TTGCCATGGTGGCTT CAGTC GTC GCCTG TTTTTACTGCGTGTC TERM 2390 2974833 - 2974782 - R 100 -11.8 -5.27779 | gap 3, opp_overlap 2974820, overlap 2974814 TCGAATAGCAAAAAA GCCGAGC-GTGA-CATCAGGT-GCG TCCCG CACAACCCGATGATCACTGCCCGGC GTACCCTCACGTCCG Rpic_2870 2976819 - 2974867 - | chaperone protein DnaK TERM 2391 2976999 - 2976981 - H 84 -8.8 -4.56597 | opp_overlap 2976933 2976931 GCTCCCTGGCAAAAA CGTGCGTT TTG AACGCCCG GAGCCGCAAACCGGG Rpic_2871 2977084 - 2978379 + | outer membrane phospholipase A Rpic_2872 2978799 - 2978392 - | GreA/GreB family elongation factor Rpic_2873 2979536 - 2979111 - | putative thioredoxin protein Rpic_2874 2980197 - 2979550 - | GrpE protein TERM 2392 2980438 - 2980426 - H 88 -3.3 -5.4833 | opp_overlap 2980430 TGATGCAAGAAAAAA TCGGG GGG CGCGA GCTTCTTTGAGGGTT Rpic_2875 2980460 - 2980657 + | putative transmembrane protein Rpic_2876 2981077 - 2980679 - | RNA-binding S4 domain protein Rpic_2877 2982189 - 2981074 - | Ferrochelatase Rpic_2878 2983481 - 2982246 - | imidazolonepropionase Rpic_2879 2984451 - 2983474 - | formiminoglutamase Rpic_2880 2986010 - 2984454 - | histidine ammonia-lyase Rpic_2881 2987754 - 2986036 - | urocanate hydratase TERM 2393 2988217 - 2988186 - g 74 -10.8 -3.73402 | gap 1, overlap 2988187 ACATCGCCGAGGAAA TTGCGGCGCGCGGCC ATC GGCACCGCGCCG-AA CTGCACAAGCTGGAA Rpic_2882 2987909 - 2988622 + | transcriptional regulator, histidine utilization repressor, GntR family Rpic_2883 2989499 - 2988630 - | binding-protein-dependent transport systems inner membrane component Rpic_2884 2990287 - 2989496 - | ABC transporter related Rpic_2885 2991348 - 2990284 - | taurine ABC transporter, periplasmic binding protein TERM 2394 2991320 - 2991297 - G 75 -10.3 -3.9377 | overlap 2991309 ACAAGGCGAACGAAA TGGCCGCAG ACATCG CTGCAGCCA GCAAGCGAGAGAGGG Rpic_2886 2992532 - 2991474 - | heat-inducible transcription repressor HrcA Rpic_2887 2992644 - 2993582 + | ATP-NAD/AcoX kinase TERM 2395 2995226 - 2995169 - g 81 -17 -2.78384 | gap 1, overlap 2995208 GCCGCGTGGACGAGA TCGCCCGCAT-GCTGGGCGGGGCGTCG CTCAC CGACACCACGCGCCGCCATGCAGACGA GATGCTCGCCGCAGG Rpic_2888 2993593 - 2995299 + | DNA repair protein RecN Rpic_2889 2995393 - 2995851 + | putative lipoprotein TERM 2396 2995884 - 2995905 + F 77 -11.5 -3.60971 | opp_overlap 2995884, overlap 2995885 CCACACTGTGAATCA TCGGGCGCC GTCT GGCGTCCGG TTTCCAGCTTCACAT TERM 2397 2996583 - 2996532 - g 95 -17.8 -3.8211 | CGCCACGCAGAACAA CCTGGCCGCGCCGGCGCTGGTGCC GGGC GGCATCAACGCGGCCGCGGCATGG AGCATCACGCAGGGC Rpic_2890 2996116 - 2997759 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2398 2998011 - 2998035 + G 71 -12.8 -2.99871 | opp_overlap 2997989, overlap 2998009 GCCCAGGGGGGTATC GTCCGCGCGC TGGTC GCGCTCGGAC TGGTTTCGTATCAAG TERM 2399 2998154 - 2998133 - g 75 -6.5 -4.41494 | gap 1 GATCGTCAAGGAAAA GAGCGGCGCC AAT GGCGCT-CTC CAATTGCAATCCGCA Rpic_2891 2997984 - 2999930 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2400 2999947 - 2999973 + T 95 -11.5 -4.60487 | overlap 2999948 CCTATTTGTACTTTC GGCCCGCGTCT TCATT GGACGCGGGCA TTTTTCCCCCTCCTG TERM 2401 2999948 - 2999972 + T 86 -15 -3.3581 | overlap 2999947 CTATTTGTACTTTCG GCCCGCGTCT TCATT GGACGCGGGC ATTTTTCCCCCTCCT Rpic_2892 3000633 - 3000019 - | putative transmembrane protein Rpic_2893 3003473 - 3000630 - | (Glutamate--ammonia-ligase) adenylyltransferase TERM 2402 3007340 - 3007328 - g 81 -3.3 -5.00884 | overlap 3007330 AGCTGCTGCAAAAAA TGGGC TTC GCCAA GGTGATCGACGGTGC TERM 2403 3007700 - 3007688 - g 71 -9.1 -3.73402 | overlap 3007676 ACATCCTGGATGAAA CGCAG GAC CTGCG CGTCAAGGTCACGCC Rpic_2894 3003649 - 3007929 + | putative transmembrane protein Rpic_2895 3007935 - 3008804 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 2404 3009589 - 3009574 - g 71 -11.8 -3.18199 | CAACCTGGAAGCCAA GCCGGC ACCG GCCGGC ACGATGACGGTGGTG Rpic_2896 3008834 - 3010297 + | peptidase U62 modulator of DNA gyrase TERM 2405 3010561 - 3010579 + F 100 -11.7 -5.75342 | opp_overlap 3010561 AGCAGATACCGAAAA CCGCCAG CGACC CTGGCGG TTTTTTTTCGCCCAG TERM 2406 3010579 - 3010561 - f 89 -11.7 -4.26589 | opp_overlap 3010561 AGCAGATACCGAAAA CCGCCAG CGACC CTGGCGG TTTTTTTTCGCCCAG Rpic_2897 3010686 - 3011765 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2407 3011789 - 3011806 + F 100 -12.7 -5.27335 | opp_overlap 3011766 3011789, overlap 3011769 CAGCGTGATTGGAAA GGACGCC TGCG GGCGTCC TTTTTGTTTGCGCGC TERM 2408 3011806 - 3011789 - f 82 -12.7 -3.60296 | opp_overlap 3011769 3011789, overlap 3011766 CAGCGTGATTGGAAA GGACGCC TGCG GGCGTCC TTTTTGTTTGCGCGC Rpic_2898 3011934 - 3012836 + | MscS Mechanosensitive ion channel TERM 2409 3012850 - 3012892 + T 100 -18.6 -3.72695 | opp_overlap 3012855 3012856, overlap 3012855 3012856 AAGTCAGCGCTGCAA GAAAATGGCCCGGCGAGT TGCCGTC ACTCGCCGGGCCGTTTTG TTTGGTGCCGACGGT TERM 2410 3012887 - 3012855 - T 100 -16.3 -4.63486 | opp_overlap 3012850 3012855 3012856, overlap 3012856 AGCGCTGCAAGAAAA TGGCCCGGCGAGT TGCCGTC ACTCGCCGGGCCG TTTTGTTTGGTGCCG TERM 2411 3012855 - 3012887 + T 100 -18.5 -4.93877 | opp_overlap 3012855 3012856, overlap 3012850 3012856 AGCGCTGCAAGAAAA TGGCCCGGCGAGT TGCCGTC ACTCGCCGGGCCG TTTTGTTTGGTGCCG TERM 2412 3012886 - 3012856 - T 95 -19.8 -3.3761 | opp_overlap 3012855 3012850 3012856, overlap 3012855 GCGCTGCAAGAAAAT GGCCCGGCGAGT TGCCGTC ACTCGCCGGGCC GTTTTGTTTGGTGCC TERM 2413 3012856 - 3012886 + T 100 -19.8 -3.55603 | opp_overlap 3012856 3012855, overlap 3012855 3012850 GCGCTGCAAGAAAAT GGCCCGGCGAGT TGCCGTC ACTCGCCGGGCC GTTTTGTTTGGTGCC Rpic_2899 3013467 - 3012910 - | ATP/cobalamin adenosyltransferase TERM 2414 3013268 - 3013310 + g 77 -11.8 -3.64703 | opp_overlap 3013263, overlap 3013269 AGATCGAACAGGTCG TGCTGGATGGCGGTGAGCGC CGT GCGCACGCCGTCGGGCAGCG TTTCCGTCAGCAGCA TERM 2415 3014875 - 3014821 - g 81 -16.5 -2.78547 | gap 1, overlap 3014818 CGAGCGCATCAACCA GCGCATCGTCGCCCGTGCAATTGCCA TGGA CGGCACCTGCACGGGCGAGCATG-GC GTGGGTCTGCACAAG Rpic_2900 3013586 - 3015004 + | FAD linked oxidase domain protein Rpic_2901 3015032 - 3015922 + | transcriptional regulator, LysR family TERM 2416 3016074 - 3016110 + F 83 -4.3 -5.14563 | overlap 3016081 3016084 GGGTCGAGCCCCAGG GCCTCGAAGTTGACGTT CCG AACGTCATCGTTGCTGC TTTTTTCATCAACGC Rpic_2902 3016416 - 3017909 + | D-lactate dehydrogenase (cytochrome) TERM 2417 3018078 - 3018049 - g 88 -15.7 -3.34344 | gap 1 GCAGGCCGCAAGCAA CCGCACGCCGCTCA CCC TGCGCGGCG-GCGG CACAAAGGATTTCTA TERM 2418 3018746 - 3018763 + G 74 -4.7 -4.58395 | TTCTGGCGCGACCTG CGCGAGC AATC GCATGCG TTTTTCGCGCGTGCC Rpic_2903 3017972 - 3019105 + | FAD linked oxidase domain protein Rpic_2904 3019118 - 3020374 + | protein of unknown function DUF224 cysteine-rich region domain protein Rpic_2905 3020427 - 3020804 + | LrgA family protein Rpic_2906 3020801 - 3021532 + | LrgB family protein Rpic_2907 3021703 - 3022098 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_2908 3022166 - 3022645 + | Cupin 2 conserved barrel domain protein TERM 2419 3023329 - 3023351 + G 71 -9.9 -3.72695 | gap 1 CGCCACTTTGCCGAA TCCGCCGAGC GCTC GCT-GGCGGA TTTCATGCGCAAGGT Rpic_2909 3022687 - 3023385 + | Helix-turn-helix type 11 domain protein Rpic_2910 3023894 - 3023397 - | Glutathione peroxidase Rpic_2911 3027225 - 3023989 - | putative type 4 fimbrial biogenesis PilY1-related protein signal peptide Rpic_2912 3027824 - 3027255 - | putative transmembrane protein Rpic_2913 3028864 - 3027827 - | putative type 4 fimbrial biogenesis PilW-related protein transmembrane TERM 2420 3028297 - 3028319 + g 73 -5.5 -4.41494 | opp_overlap 3028275 3028274, overlap 3028279 3028300 CACTGACCTGGCGAA GGTCTGCGG GCTTG CTGCAGGTC TTTTCCTTGAGCGTG TERM 2421 3028381 - 3028365 - G 88 -9.3 -4.66537 | GCGCTGAATACAAAA GGCGCCG TGT CGGTGCC GCAGAACGAATCCTG Rpic_2914 3029457 - 3028861 - | putative type 4 fimbrial biogenesis related transmembrane protein Rpic_2915 3029927 - 3029454 - | putative type 4 fimbrial pilin related transmembrane protein Rpic_2916 3030373 - 3029936 - | putative type 4 fimbrial biogenesis transmembrane protein Rpic_2917 3031710 - 3030571 - | twitching motility protein Rpic_2918 3032820 - 3031777 - | twitching motility protein Rpic_2919 3032943 - 3033659 + | alanine racemase domain protein Rpic_2920 3033646 - 3034515 + | pyrroline-5-carboxylate reductase Rpic_2921 3035423 - 3034581 - | 4-hydroxybenzoate polyprenyl transferase TERM 2422 3035501 - 3035476 - R 100 -11.2 -5.34309 | gap 1, opp_overlap 3035476 ATCACCAAAGAAAAA TGGCGCC-TGC ACGAG GCAAGGCGCCA TTTTAGTCCCGCCGA TERM 2423 3035476 - 3035501 + r 89 -11.2 -4.25104 | gap 1, opp_overlap 3035476 ATCACCAAAGAAAAA TGGCGCC-TGC ACGAG GCAAGGCGCCA TTTTAGTCCCGCCGA Rpic_2922 3037689 - 3035524 - | catalase/peroxidase HPI Rpic_2923 3038318 - 3037818 - | Ferritin Dps family protein TERM 2424 3038387 - 3038350 - R 76 -6.7 -4.56775 | opp_overlap 3038350 3038362 3038363 AGTGGTGTGCAAAAA CGCGATGCCGTCCGCTG GATT CAGCGTCGGGCCGCGCG TGCTTCCAGCCTTCT Rpic_2924 3038735 - 3038493 - | putative transmembrane protein Rpic_2925 3038911 - 3039054 + | hypothetical protein TERM 2425 3039185 - 3039152 - f 71 -8.9 -3.72576 | gap 1, opp_overlap 3039152, overlap 3039153 3039155 TTCGGCTCTACGAAA TGATGCGCCGCACCAT TTG AT-GCGCAGCGCATCC GCCCATCACGTCGTC TERM 2426 3039445 - 3039459 + F 72 -12.8 -3.07816 | CGGGCTTCTTCGGCT CCCGGC GTT GCCGGG TTCGATGGCTGCGGC TERM 2427 3039698 - 3039673 - g 70 -4.7 -4.36914 | overlap 3039676 3039689 CTTGCGGTGATAAAA GAAGATGAGCA TGAA TCCTCATCTGC TGGACCGGCTGTGGC TERM 2428 3040074 - 3040064 - g 82 -6.8 -4.62783 | overlap 3040065 CAGGCATTGGAAAAA CGCA CTT TGCG CTGAAGTTGGCAGAG TERM 2429 3040464 - 3040483 + G 79 -10 -4.08216 | overlap 3040467 CCCGGCACCTGAGCC CGAGCAGC GGTT GCTGCTTG TTTTGGCGGAGGTGC TERM 2430 3040467 - 3040480 + G 71 -8.1 -4.17048 | overlap 3040464 GGCACCTGAGCCCGA GCAGC GGTT GCTGC TTGTTTTGGCGGAGG Rpic_2926 3039508 - 3040728 + | AAA ATPase central domain protein Rpic_2927 3040844 - 3041071 + | hypothetical protein TERM 2431 3041406 - 3041393 - g 78 -4.5 -4.84311 | gap 1 GGGTACAGAAGAAAA CGTGCG TAC CGC-CG AAGGCTACGCTGGTC Rpic_2928 3041049 - 3041825 + | metallophosphoesterase TERM 2432 3043195 - 3043148 - g 83 -9.2 -4.42653 | gap 1, opp_overlap 3043163, overlap 3043152 AGTCGATGCACAAAA TCTAGTGC-GCGAGAAGGTCCAA GAA TGGGACCTTCTCACAGCGCAAAA AAAACAGCGCTAACA Rpic_2929 3041997 - 3043208 + | hypothetical protein Rpic_2930 3044422 - 3043205 - | hypothetical protein TERM 2433 3044168 - 3044154 - G 81 -3.4 -5.06816 | ATTTCGGAACAAAAA CGCGAC AGA GCCCCG CGGATGGCATCCCCA Rpic_2931 3047024 - 3044415 - | hypothetical protein TERM 2434 3044707 - 3044673 - G 79 -10.1 -4.1822 | gap 2 TTGTAGCTCAATAAA GATCGCTCGC-CG-GAG AAG CTCGCGCGCGAGAGATC CTAGCTCTGGGTCAA Rpic_2932 3047467 - 3047820 + | hypothetical protein TERM 2435 3047983 - 3047938 - g 71 -4 -4.56775 | gap 1 ACGCGTTTCCAAAAA GGGAAGGCCGTTGGCGC GTGGATTGGTTCG GCCCCATC-GCCTTCCC CGATCGCATGGTGCG Rpic_2933 3047910 - 3049592 + | hypothetical protein Rpic_2934 3050621 - 3049560 - | hypothetical protein Rpic_2935 3051523 - 3050618 - | TniB family protein TERM 2436 3051334 - 3051356 + g 77 -12 -3.68351 | opp_overlap 3051334 3051331 ACGGACCAACAATCA GGTAACTCGG CAT CCGCGTTACC TTTGGATAGTCGAGC Rpic_2936 3053438 - 3051516 - | TniA transposase TERM 2437 3051664 - 3051682 + g 82 -4.4 -5.00616 | overlap 3051661 TTGCGCTGCTGCTCA GCACGACG TGC CGCCTTGC TTTTTTCAGCGGCAG Rpic_2937 3054088 - 3053441 - | TnsA endonuclease Rpic_2938 3054443 - 3054721 + | protein of unknown function DUF156 Rpic_2939 3054729 - 3056033 + | cation diffusion facilitator family transporter Rpic_2940 3056165 - 3057118 + | hypothetical protein Rpic_2941 3057462 - 3058385 + | cation diffusion facilitator family transporter Rpic_2942 3059989 - 3058382 - | integral membrane sensor signal transduction histidine kinase Rpic_2943 3060067 - 3060672 + | two component transcriptional regulator, LuxR family Rpic_2944 3063866 - 3060702 - | heavy metal efflux pump, CzcA family Rpic_2945 3065033 - 3063879 - | efflux transporter, RND family, MFP subunit TERM 2438 3065669 - 3065639 - g 72 -13.2 -3.14881 | opp_overlap 3065639 3065640, overlap 3065643 3065656 CAAGGCTCGTATCAA CCGAGCCGACAGCA AAA CGCCGTCGGCACGA TTTCGCCCACGCTCA TERM 2439 3065666 - 3065656 - g 70 -4.6 -4.35116 | opp_overlap 3065640 3065639, overlap 3065643 3065639 GAGCCGACAGCAAAA CGCC GTC GGCA CGATTTCGCCCACGC Rpic_2946 3065237 - 3066754 + | RND efflux system, outer membrane lipoprotein, NodT family Rpic_2947 3067582 - 3066794 - | hypothetical protein TERM 2440 3067665 - 3067677 + H 70 -4.1 -4.68645 | opp_overlap 3067657, overlap 3067666 ACGCAAACGAAAACC TGCAT GAG ATGCG TTTTCGTTTTCACTC TERM 2441 3068233 - 3068208 - g 81 -7.5 -4.57073 | CAGCCCGTTGAAAAA GGACGCGCACG TATA CGTGAACATCC GGGATTGCGAGCAAC Rpic_2948 3067867 - 3068304 + | hypothetical protein Rpic_2949 3069979 - 3068336 - | natural resistance-associated macrophage protein Rpic_2950 3070229 - 3070023 - | hypothetical protein TERM 2442 3070354 - 3070318 - R 71 -8.8 -3.70902 | gap 1, opp_overlap 3070325 3070328, overlap 3070321 3070322 3070340 GGCGGCAGATTCAAA CAATCAAGG-AGCGATG CAGA CACCGCTGCCTTGCCTG GGCGGCAAGTCAGCA TERM 2443 3070370 - 3070340 - R 75 -13.3 -2.91912 | opp_overlap 3070328 3070325, overlap 3070322 3070321 3070318 3070367 GGAGCGATGCAGACA CCGCTGCCTTGCC TGGGC GGCAAGTCAGCAG CAGGGAAAACCGTGC Rpic_2951 3071914 - 3070466 - | Carbohydrate-selective porin OprB TERM 2444 3071359 - 3071378 + g 75 -4.2 -4.60797 | overlap 3071366 CCACGTCAGCGAACT GGTTGAAG TCGG CGTCGACC TTTTCTGTGTCACCG TERM 2445 3072002 - 3071979 - H 74 -12.4 -3.14564 | overlap 3071993 CGAGCCTCCCAGGAA CCACGCACGC AAAC GCGTACGCGG CCACATGGCCGTGTC Rpic_2952 3072784 - 3073794 + | sodium/calcium exchanger membrane region Rpic_2953 3075028 - 3074081 - | transcriptional regulator, LysR family TERM 2446 3075825 - 3075854 + G 79 -5.7 -4.62069 | gap 2 GACCACATATCGCGC CGCTG-GCCG-GC ATGTCG GCTCGGCACGGCG TTTTTGCGGTAACGG Rpic_2954 3075188 - 3076351 + | metallophosphoesterase Rpic_2955 3078753 - 3076606 - | ATP-dependent DNA helicase RecG TERM 2447 3079076 - 3079094 + G 82 -3.7 -5.00616 | opp_overlap 3079075 GGTCTTCAACGACAC GCGCGTC ATCAA GGCACGC TTTTTTGGCCACAAA TERM 2448 3079453 - 3079483 + G 80 -8.8 -4.38712 | ACGATGCGCTGTTCG CCAAGCTGGACGCC ATG GGCATCCGGCGCGG TTTTCTCACGCTGCA Rpic_2956 3078885 - 3079964 + | S-adenosylmethionine/tRNA-ribosyltransferase-isomerase TERM 2449 3080439 - 3080418 - g 74 -5.1 -4.54047 | gap 1, overlap 3080406 3080419 GCACGCCATACAAAA TCGGCGATCG CCC CG-CCACCGA GGCCGAAGCCGCCGC Rpic_2957 3079967 - 3081118 + | queuine tRNA-ribosyltransferase Rpic_2958 3081224 - 3081556 + | preprotein translocase, YajC subunit TERM 2450 3082440 - 3082426 - g 70 -11.4 -3.38088 | overlap 3082413 AACCGAGTGAACGAA CTCGGC GTG GCCGAG CCGGTGATCCAACAG Rpic_2959 3081667 - 3083556 + | protein-export membrane protein SecD TERM 2451 3083623 - 3083588 - f 74 -6.8 -4.386 | gap 1, overlap 3083589 3083590 GAATCTCGCATAAAA CCGGC-ACCGCCCCC AACATGA AGGGGCGGTCGCCAC AAAGGGCAGACCATG TERM 2452 3084193 - 3084205 + G 70 -5.5 -4.24204 | GGGCTTCTTCGCCTT CTTCC AGT GGGAG TTTTCGCTGTCGGTG Rpic_2960 3083636 - 3084607 + | protein-export membrane protein SecF TERM 2453 3084650 - 3084679 + T 93 -15.1 -3.9941 | opp_overlap 3084656, overlap 3084656 CGCATTCTCGGGCAA CAAAAAGCCCCGC AGCT GCGGGGCTTTTTC TTTGGTTGTAGCGGC TERM 2454 3084656 - 3084673 + T 100 -14.1 -5.39681 | opp_overlap 3084656, overlap 3084650 CTCGGGCAACAAAAA GCCCCGC AGCT GCGGGGC TTTTTCTTTGGTTGT TERM 2455 3084673 - 3084656 - T 100 -14.1 -5.06414 | opp_overlap 3084656 3084650 CTCGGGCAACAAAAA GCCCCGC AGCT GCGGGGC TTTTTCTTTGGTTGT Rpic_2961 3085299 - 3084703 - | YceI family protein TERM 2456 3085117 - 3085141 + g 72 -8.5 -4.14392 | overlap 3085118 GGTCTTGGCGGCGCG ATCCAGCGTCA CGG TGCCGCTGGAC TTTTCGAACTTGCCG Rpic_2962 3085935 - 3085363 - | YceI family protein TERM 2457 3086093 - 3086048 - R 71 -9 -3.75437 | opp_overlap 3086052, overlap 3086049 AATCAGCGGAGGAAA GGCACCATG-CGGCGCAGCGTG CCGT CACGCT-CGACGACGTGGTGCT TGAGCGCAGCCAGGA TERM 2458 3086092 - 3086049 - R 70 -12.5 -2.8478 | opp_overlap 3086052, overlap 3086048 ATCAGCGGAGGAAAG GCACCATG-CGGCGCAGCGTG CCGT CACGCT-CGACGACGTGGTGC TTGAGCGCAGCCAGG Rpic_2963 3086616 - 3086035 - | cytochrome B561 TERM 2459 3086815 - 3086844 + r 100 -20.7 -3.61398 | opp_overlap 3086815 GGACGCCAACCAAAA CGGCCCGCCCTCG GATT CGAGAGCGGGCCG TTCTTCAGACCACAC TERM 2460 3086844 - 3086815 - R 100 -22.9 -4.42238 | opp_overlap 3086815 GGACGCCAACCAAAA CGGCCCGCCCTCG GATT CGAGAGCGGGCCG TTCTTCAGACCACAC Rpic_2964 3088252 - 3086879 - | adenylosuccinate lyase TERM 2461 3089095 - 3089067 - g 100 -17.5 -4.18018 | CGCGCGCATTGAAAA GCGGCCGAGTTTC ATG GAAACCCAGCCGC AGTAATCCATAGCAA Rpic_2965 3088492 - 3089100 + | Glutathione S-transferase domain Rpic_2966 3090719 - 3089121 - | ferredoxin-dependent glutamate synthase TERM 2462 3089425 - 3089460 + g 73 -11.9 -3.31461 | gap 1 CGAGACGGGTCTTGT GTCGCCACGCCGGTCG GGCAG CGGTCGGTGTGGC-AC TTCTGCGCCTGGATG TERM 2463 3089742 - 3089724 - G 83 -14.6 -3.23216 | opp_overlap 3089717 GTCGACGACGATGAA GTCCGGCA GGA TGCCGGAC TCGAGCATTGCCTTG Rpic_2967 3091921 - 3090809 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Rpic_2968 3092412 - 3091918 - | NUDIX hydrolase TERM 2464 3093056 - 3093000 - g 72 -7.1 -4.30576 | gap 1, overlap 3093003 GTTTGATGACGAAAA CACGGCCCGCCTCGCCGCCGCCAACG TCACCG CGTTTGCGCTGG-AAGCCGCGCCGCG CACCACGCGCGCGCA Rpic_2969 3092701 - 3093840 + | NAD(P)(+) transhydrogenase (AB-specific) Rpic_2970 3093924 - 3094286 + | aspartate 1-decarboxylase TERM 2465 3094333 - 3094282 - f 73 -9.3 -3.95852 | gap 1, overlap 3094268 3094283 3094313 AGGCCATCAAGGAAA CCTGACGCGCCAGGCGGCCGGGCC TGAAC GACCTGGCCGCTTCGCACATC-GA CCAAGAAGCGAGGAG Rpic_2971 3094357 - 3094686 + | NAD/NADP transhydrogenase alpha subunit-like protein Rpic_2972 3094683 - 3096143 + | NAD(P)(+) transhydrogenase (AB-specific) TERM 2466 3096266 - 3096231 - f 88 -13.2 -3.6215 | gap 1, opp_overlap 3096226, overlap 3096232 GTAACGTAGTGGAAA CGGGCAGCGC-CGGCCA CAC CGGCCGTGCGCTGCACC CAGCCCTCTTCCGAC TERM 2467 3096265 - 3096232 - f 84 -16.7 -2.76969 | gap 1, opp_overlap 3096226, overlap 3096231 TAACGTAGTGGAAAC GGGCAGCGC-CGGCCA CAC CGGCCGTGCGCTGCAC CCAGCCCTCTTCCGA Rpic_2973 3096294 - 3097331 + | response regulator receiver protein TERM 2468 3097850 - 3097882 + F 72 -12.5 -3.04144 | TCACGACTGATGCGG CGGCATGCCCGGCAG TGT CGGCGGGGCGCGCCG TATTCGCGGTGCCCG Rpic_2974 3097987 - 3099399 + | regulatory protein TERM 2469 3100082 - 3100070 - g 75 -7.7 -4.30576 | overlap 3100047 3100046 3100072 3100073 TCTGCAGCAGGAAAA GATGG CCG CCATC GGCACGCTGTCCGCC Rpic_2975 3099420 - 3100748 + | integral membrane sensor signal transduction histidine kinase Rpic_2976 3100756 - 3101862 + | response regulator receiver sensor signal transduction histidine kinase Rpic_2977 3101945 - 3102964 + | response regulator receiver protein TERM 2470 3102986 - 3103013 + T 81 -15.6 -2.91144 | opp_overlap 3102988, overlap 3102989 3103006 3103007 CCCGCAGTTGTCACA CAGCGCCGATGC CTAT GCGTCGGCGTTG TCGTTTGAGGCATCG TERM 2471 3102989 - 3103010 + T 88 -13.7 -3.60151 | opp_overlap 3102988, overlap 3102986 3103006 3103007 GCAGTTGTCACACAG CGCCGATGC CTAT GCGTCGGCG TTGTCGTTTGAGGCA Rpic_2978 3104416 - 3102998 - | putative RNA methylase Rpic_2979 3104855 - 3104433 - | hypothetical protein TERM 2472 3104924 - 3104898 - R 78 -7.1 -4.59773 | overlap 3104900 CGCGATCGGTAAAAA CAGCGCGCCGC TCGTG GCGGCGCTCAA TGTGCAGCAAGCGAT TERM 2473 3104922 - 3104900 - R 82 -11.9 -3.91506 | overlap 3104898 CGATCGGTAAAAACA GCGCGCCGC TCGTG GCGGCGCTC AATGTGCAGCAAGCG Rpic_2980 3106221 - 3104941 - | gamma-glutamyl phosphate reductase Rpic_2981 3107370 - 3106294 - | DNA polymerase III, delta subunit TERM 2474 3106532 - 3106556 + g 100 -14.3 -4.77036 | overlap 3106534 ATGGACGCCACCGGC TTGCCTTGGGC CGC GCCCGAGGCGA TTTTTGATAATACGC TERM 2475 3106534 - 3106554 + g 75 -14.7 -2.66962 | overlap 3106532 GGACGCCACCGGCTT GCCTTGGGC CGC GCCCGAGGC GATTTTTGATAATAC Rpic_2982 3107920 - 3107396 - | Rare lipoprotein B Rpic_2983 3110584 - 3107951 - | leucyl-tRNA synthetase TERM 2476 3109623 - 3109642 + g 72 -3.4 -4.6951 | overlap 3109625 AGCGGATGCGTGACG GTCAGGCC AGTC GGCATGCC TTTCTTTTCCATGGT TERM 2477 3110276 - 3110288 + g 71 -10.5 -3.61398 | overlap 3110279 GTAGGTCCATGCAGC CGGCG CCA CGCCG TTGTTCAGCGCCGCG TERM 2478 3110745 - 3110719 - R 100 -15.9 -5.626 | gap 1, opp_overlap 3110719 GAGCGGAGAAAAAAA GGGCGCCGGACA GGCC TG-CCGGCGCCC TTTCCTGCCCGCCTG TERM 2479 3110719 - 3110745 + r 95 -15.9 -3.72893 | gap 1, opp_overlap 3110719 GAGCGGAGAAAAAAA GGGCGCCGGACA GGCC TG-CCGGCGCCC TTTCCTGCCCGCCTG Rpic_2984 3111554 - 3110763 - | Dihydrodipicolinate reductase TERM 2480 3111634 - 3111600 - R 93 -15.7 -3.5394 | overlap 3111604 AAACGGTCTGTCAAA CGCACAAGCGGCGGA ACCCG TCCGCCGCTCGCTCG AAGATGGTGTGCCGA TERM 2481 3111630 - 3111604 - R 78 -15.9 -2.64155 | overlap 3111600 GGTCTGTCAAACGCA CAAGCGGCGGA ACCCG TCCGCCGCTCG CTCGAAGATGGTGTG Rpic_2985 3112317 - 3111661 - | SmpA/OmlA domain protein Rpic_2986 3112467 - 3112898 + | ferric uptake regulator, Fur family TERM 2482 3112920 - 3112940 + T 100 -14 -4.8622 | opp_overlap 3112920 GTCGCAAAAAAGAAA CGGCCGCA TCATC TGCGGCCG TTTTTCATTGGAGCG TERM 2483 3112940 - 3112920 - T 100 -14 -5.04249 | opp_overlap 3112920 GTCGCAAAAAAGAAA CGGCCGCA TCATC TGCGGCCG TTTTTCATTGGAGCG TERM 2484 3112950 - 3112998 + T 82 -8.9 -4.42386 | gap 2, opp_overlap 3112962 3112969 CGGCCGTTTTTCATT GGAGCGGAGAGACGACGAATGTC AGGCG GACAGCCG-CGTCTCGCC-CTCC TTTTCTGCGTCGCCC Rpic_2987 3114014 - 3112971 - | transcriptional regulator, LysR family TERM 2485 3114288 - 3114303 + r 80 -11.8 -3.82946 | opp_overlap 3114288 AGGCCTATGAAAAAA CGCGCC CGAA GGCGCG TTCTCTTTCGACTGC TERM 2486 3114303 - 3114288 - R 100 -11.8 -5.14965 | opp_overlap 3114288 AGGCCTATGAAAAAA CGCGCC CGAA GGCGCG TTCTCTTTCGACTGC Rpic_2988 3115330 - 3114332 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2487 3115406 - 3115377 - R 100 -12.9 -4.86001 | gap 1, overlap 3115378 3115381 ACGATGCGATAAAAA CCAGCGCGGCACCT CGT AGGTGCCGCG-TGC GCAAATTCAGTTAAG TERM 2488 3115405 - 3115378 - R 93 -16.4 -3.50877 | gap 1, overlap 3115377 3115381 CGATGCGATAAAAAC CAGCGCGGCACCT CGT AGGTGCCGCG-TG CGCAAATTCAGTTAA TERM 2489 3115403 - 3115381 - R 88 -19.2 -2.58667 | overlap 3115378 3115377 TGCGATAAAAACCAG CGCGGCACCT CGT AGGTGCCGCG TGCGCAAATTCAGTT Rpic_2989 3117432 - 3115417 - | transketolase TERM 2490 3117508 - 3117464 - R 80 -9.8 -4.10925 | opp_overlap 3117454, overlap 3117454 AGATAGGCGGGAAAA CCGCGATTTTACCAGACGGG GATGA CCCGGCTGGGGTGATCGCGG TCAGTAAAACGTGCT Rpic_2990 3118696 - 3117548 - | Mandelate racemase/muconate lactonizing protein Rpic_2991 3119343 - 3118717 - | KDPG and KHG aldolase Rpic_2992 3120149 - 3119340 - | short-chain dehydrogenase/reductase SDR Rpic_2993 3121030 - 3120146 - | Aldose 1-epimerase Rpic_2994 3121925 - 3121011 - | SMP-30/Gluconolaconase/LRE domain protein Rpic_2995 3122943 - 3121936 - | Monosaccharide-transporting ATPase Rpic_2996 3124496 - 3122961 - | ABC transporter related Rpic_2997 3125534 - 3124530 - | Monosaccharide-transporting ATPase TERM 2491 3125264 - 3125286 + g 70 -11.2 -3.35996 | opp_overlap 3125263 3125264, overlap 3125274 CGCAGATCACGAAAC CCTGCGCGTG CTG CGCGCCCAGG TTGTCGATGGCCGTC TERM 2492 3125623 - 3125588 - R 71 -9.7 -3.72576 | gap 1, overlap 3125591 CTGCGTTGGATGAAA GAGGGATGGCGTGTGC GCCGG GCTCACGCCA-CCTTC AAGGTTTTGACCAGG Rpic_2998 3126624 - 3125611 - | putative 2-dehydro-3-deoxygalactonokinase protein Rpic_2999 3127863 - 3126799 - | porin Gram-negative type Rpic_3000 3128039 - 3128965 + | transcriptional regulator, LysR family Rpic_3001 3129043 - 3129462 + | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 2493 3129513 - 3129525 + G 93 -6.9 -5.14563 | overlap 3129514 CAAGGATTGCTGTAA TGGGG CTT CCCCG TTTTTTCGTCGACAC Rpic_3002 3129512 - 3130261 + | protein of unknown function DUF558 Rpic_3003 3130354 - 3130953 + | protein of unknown function DUF937 TERM 2494 3130971 - 3130996 + T 100 -11.9 -5.44119 | opp_overlap 3130976, overlap 3130976 GTCATCGCCGCACAG AAAAAGCCCGC AATT GCGGGCTTTTC TTTTTTTGCGCTGGC TERM 2495 3130991 - 3130976 - T 100 -11.8 -4.96848 | opp_overlap 3130971 3130976 CGCCGCACAGAAAAA GCCCGC AATT GCGGGC TTTTCTTTTTTTGCG TERM 2496 3130976 - 3130991 + T 100 -11.8 -5.55855 | opp_overlap 3130976, overlap 3130971 CGCCGCACAGAAAAA GCCCGC AATT GCGGGC TTTTCTTTTTTTGCG Rpic_3004 3131958 - 3131014 - | transcriptional regulator, LysR family TERM 2497 3132237 - 3132217 - g 75 -3.2 -4.83615 | opp_overlap 3132206, overlap 3132219 CACTGCCGATAAAAA CGGCTTCA TGTAT CGAAGCTG GATGAAGAACCAGGG Rpic_3005 3132158 - 3133894 + | Dihydroxy-acid dehydratase Rpic_3006 3133921 - 3134862 + | dihydrodipicolinate synthetase Rpic_3007 3134865 - 3135803 + | Galactose 1-dehydrogenase Rpic_3008 3135857 - 3136861 + | Monosaccharide-transporting ATPase TERM 2498 3136897 - 3136867 - f 87 -17.5 -3.06796 | GGGCATTTGATGCAA CGCGCGGCGCGGG CCGGT CCCGCGCCCCACG CGCATCCGCAAAGAG Rpic_3009 3136919 - 3138448 + | ABC transporter related TERM 2499 3138448 - 3138431 - f 80 -11.3 -3.74251 | overlap 3138434 GACACCCTCATCAAA CTAGCGC TGCC GCGCTAG CGCGCGATCCACGCC Rpic_3010 3138482 - 3139492 + | Monosaccharide-transporting ATPase TERM 2500 3139557 - 3139542 - T 100 -11.8 -5.46657 | opp_overlap 3139537 3139542 TACGGCAACAAAAAA GCCCGC AAGT GCGGGC TTTTCATTTAACGCC TERM 2501 3139542 - 3139557 + T 95 -11.8 -4.54727 | opp_overlap 3139542, overlap 3139537 TACGGCAACAAAAAA GCCCGC AAGT GCGGGC TTTTCATTTAACGCC Rpic_3011 3140219 - 3139596 - | hypothetical protein TERM 2502 3139752 - 3139741 - G 79 -7.2 -4.49311 | opp_overlap 3139714, overlap 3139742 AGCACGATCACAAAA CCCG GTTG CGGG CCGGCCTTGTAGATC Rpic_3012 3140647 - 3140216 - | guanine-specific ribonuclease N1 and T1 TERM 2503 3141077 - 3141100 + r 95 -13.9 -4.14243 | opp_overlap 3141077 TAGTGAATTAAAAAA GGGAGCGCA GCATCG TGCGCTCCC TTTTCCAGTGCAGTG TERM 2504 3141100 - 3141077 - R 100 -13.9 -5.28481 | opp_overlap 3141077 TAGTGAATTAAAAAA GGGAGCGCA GCATCG TGCGCTCCC TTTTCCAGTGCAGTG Rpic_3013 3143465 - 3141120 - | Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase TERM 2505 3142035 - 3142068 + g 75 -10.3 -3.8211 | gap 1, overlap 3142024 CACGGCACGCAGCAC GCGC-TCTTCTTCGCC TTC GGCAAAGATGATGCGC TTGTTCTCCATCGGC TERM 2506 3142315 - 3142327 + g 71 -9.1 -3.78775 | ATGCCGTAGGCGGAA GCGAC GAT GTCGC TTTGCTCCTGGCGAG Rpic_3014 3143627 - 3144712 + | thiamine-monophosphate kinase Rpic_3015 3144709 - 3145287 + | phosphatidylglycerophosphatase A Rpic_3016 3145320 - 3145820 + | CinA domain protein Rpic_3017 3146040 - 3145822 - | putative metal transport transmembrane protein Rpic_3018 3146896 - 3146081 - | orotidine 5'-phosphate decarboxylase TERM 2507 3147220 - 3147187 - g 70 -11.1 -3.40522 | gap 1 ACTGCTGCAGCACAA GCCGATCTGGATCGAC GTG ATCGACCCAGA-CGAC GAAGAGCTGGCGTGG TERM 2508 3147389 - 3147369 - g 95 -12.5 -4.24413 | opp_overlap 3147368 3147367 TCGACGAAGAAACAA CCTCGCGCA ACG TGCGCGTGG CCTTCGTGCTGACCA Rpic_3019 3147107 - 3148069 + | magnesium and cobalt transport protein CorA Rpic_3020 3148786 - 3148082 - | monofunctional biosynthetic peptidoglycan transglycosylase TERM 2509 3148463 - 3148481 + g 84 -6.6 -4.82901 | overlap 3148466 CGAACCGCCCGCGAC CACGTGGC CGC GCCGCTTG TTTTTCTCCCACGCG TERM 2510 3148466 - 3148478 + g 79 -6.9 -4.52873 | overlap 3148463 ACCGCCCGCGACCAC GTGGC CGC GCCGC TTGTTTTTCTCCCAC Rpic_3021 3149724 - 3148807 - | shikimate 5-dehydrogenase Rpic_3022 3150650 - 3149736 - | TonB family protein Rpic_3023 3152799 - 3150703 - | ribonuclease II Rpic_3024 3153530 - 3152952 - | Chorismate lyase Rpic_3025 3154150 - 3153527 - | protein of unknown function UPF0227 Rpic_3026 3155543 - 3154158 - | UDP-N-acetylmuramate Rpic_3027 3155622 - 3156296 + | hypothetical protein TERM 2511 3156485 - 3156460 - g 70 -6.2 -4.28774 | gap 2, opp_overlap 3156460 CCACCGAACCCAAAA CGCCGGCTGACA CTGC TGTC-GCCG-CG TTTTACAGCAGCAAG Rpic_3028 3156363 - 3156887 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 2512 3156910 - 3156899 - f 84 -5.8 -4.91712 | opp_overlap 3156898 GTGAATGTACAAAAA CGTC ATAT GACG CTCATGTGCACGCAA TERM 2513 3156969 - 3156984 + G 72 -9 -4.19974 | opp_overlap 3156969 GCGGGACGCCCAAGA TCGGTG AAAA CACCGA TTTGTTGAGAGTTTT Rpic_3029 3156905 - 3157027 + | hypothetical protein Rpic_3030 3157071 - 3157538 + | 3-dehydroquinate dehydratase, type II TERM 2514 3157530 - 3157547 + F 76 -9.1 -4.03546 | opp_overlap 3157529 3157527 3157530 GCAATCGACCAACAC GGCGGCT GATC AGCCGTC TTCTTCCTTTTATTT TERM 2515 3157854 - 3157815 - g 89 -18 -3.08679 | gap 1, overlap 3157799 GGCCCCGATGCAATA TGCGCCGAT-GCCGATGCA GGC TGCACCGGCTATGGGCGCA CCCGCCGCAGCAGCT Rpic_3031 3157681 - 3158148 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein Rpic_3032 3158281 - 3159648 + | acetyl-CoA carboxylase, biotin carboxylase TERM 2516 3159854 - 3159866 + G 71 -9.1 -3.71848 | CCTGCTCGCCGAGGA TGCCG ATC CGGCA TTGTTGGTGGCAGCC Rpic_3033 3159645 - 3160541 + | ribosomal protein L11 methyltransferase TERM 2517 3160941 - 3160915 - g 84 -13.7 -3.66178 | CCCCTGAACCGGAAA CGCCCGCGGCA CCGCC TGCCGCAGACG ACGACCACGGCTTCG TERM 2518 3161623 - 3161611 - g 72 -6.9 -4.32903 | overlap 3161614 ACCAAACACGCAAAA CGACG GGA CGCCG CGCACTGGCGCGCGT Rpic_3034 3160638 - 3162098 + | MJ0042 family finger-like protein Rpic_3035 3162249 - 3162749 + | Redoxin domain protein TERM 2519 3162793 - 3162823 + F 85 -17.6 -2.90688 | opp_overlap 3162798, overlap 3162780 3162796 CCGGTCTCTCGTTCA TCACACGGCCGTCC ACT GGGCGGCCGTGTCA TATCTGGAGTGCTTC TERM 2520 3162796 - 3162820 + F 88 -19.3 -2.69799 | opp_overlap 3162798, overlap 3162793 3162780 GTCTCTCGTTCATCA CACGGCCGTCC ACT GGGCGGCCGTG TCATATCTGGAGTGC TERM 2521 3162818 - 3162798 - f 73 -13.9 -2.78384 | opp_overlap 3162796 3162793 3162780 CTCTCGTTCATCACA CGGCCGTCC ACT GGGCGGCCG TGTCATATCTGGAGT Rpic_3036 3162842 - 3163777 + | PfkB domain protein Rpic_3037 3163787 - 3164254 + | 17 kDa surface antigen TERM 2522 3164324 - 3164296 - T 73 -10.2 -3.59979 | opp_overlap 3164297 3164298, overlap 3164298 GGGGTTCATCGGAAA CACCGCATCGGC TTCGT GCCGGTGCGGTT TTTTTATGCCCGAGA TERM 2523 3164298 - 3164322 + T 100 -15 -5.60993 | opp_overlap 3164298 3164296, overlap 3164297 GGTTCATCGGAAACA CCGCATCGGC TTCGT GCCGGTGCGG TTTTTTTATGCCCGA TERM 2524 3164322 - 3164298 - T 76 -12.8 -3.38046 | opp_overlap 3164297 3164298, overlap 3164296 GGTTCATCGGAAACA CCGCATCGGC TTCGT GCCGGTGCGG TTTTTTTATGCCCGA TERM 2525 3164401 - 3164373 - T 100 -13 -5.06414 | TTGCGCCAAGAAAAA GCCCGCCGGGCG TGAGC CGATCGGCGGGC GGTGCAAGACACCAA Rpic_3038 3165067 - 3164507 - | putative histone H1 protein TERM 2526 3166466 - 3166489 + H 72 -3 -4.74132 | opp_overlap 3166462, overlap 3166481 CGACGATAGAAGGAT TGTTCTACGG CAAT CCGCAGGCCA TTTTTGCTGCGATCT Rpic_3039 3166811 - 3167620 + | putative hemagglutinin-related transmembrane protein Rpic_3040 3167753 - 3168865 + | putative hemagglutinin-related transmembrane protein Rpic_3041 3168932 - 3169387 + | conserved hypothetical signal peptide protein TERM 2527 3169420 - 3169453 + F 83 -15.9 -3.01791 | opp_overlap 3169405 3169403, overlap 3169422 CACCTCCCAACGCGC GGCGGTGCCCCCTCC TTGC GGGTGGGGCGCCGTC TCTTCAGGCGCCGGT TERM 2528 3169422 - 3169451 + F 80 -14.9 -3.06696 | opp_overlap 3169405 3169403, overlap 3169420 CCTCCCAACGCGCGG CGGTGCCCCCTCC TTGC GGGTGGGGCGCCG TCTCTTCAGGCGCCG TERM 2529 3169457 - 3169484 + F 84 -9 -4.57569 | overlap 3169460 TGGGGCGCCGTCTCT TCAGGCGCCGGT GCAA GCCGGCGCCTTC TTTTTGCGGAAATCC TERM 2530 3169460 - 3169481 + F 100 -15.1 -4.40561 | overlap 3169457 GGCGCCGTCTCTTCA GGCGCCGGT GCAA GCCGGCGCC TTCTTTTTGCGGAAA TERM 2531 3170894 - 3170875 - g 72 -8.6 -4.07568 | gap 1, opp_overlap 3170866 3170886 CGGCCGCGTGGAAAA CGG-CACCA CGT TGGTGGCCG AAGCGGGCAACGTGA Rpic_3042 3169595 - 3171142 + | methyl-accepting chemotaxis sensory transducer TERM 2532 3171277 - 3171294 + G 74 -4.8 -4.58283 | gap 1 TGCCCGAGCGCAACC GGCCGCC ATTGA GG-GGCC TTTTTGGCGCGATTG Rpic_3043 3171261 - 3172604 + | hypothetical protein TERM 2533 3172640 - 3172625 - f 93 -8.2 -4.87786 | opp_overlap 3172630, overlap 3172629 CCAATTCGATAAAAA GCGACG CCCG CGCCGC CGAGAACGCAACGAT TERM 2534 3172630 - 3172673 + F 75 -13.8 -2.86475 | gap 1, opp_overlap 3172625 3172629 TCGATAAAAAGCGAC GCC-CGCGCCGCCGAGAACGC AAC GATTTCTCGATGGCGCGCGGC TATGCTGTGGCGTTC Rpic_3044 3172780 - 3173637 + | protein of unknown function DUF6 transmembrane Rpic_3045 3174723 - 3173641 - | hypothetical protein TERM 2535 3173775 - 3173731 - G 70 -2.6 -4.66987 | gap 1, overlap 3173732 3173743 CACATCGCAATAAAA CGCATCACGCAAC-GCCTGGC GGAT GCCGGCCCGCTGCGCGGCGCC CTGCTCCGGGTGGCG TERM 2536 3174659 - 3174684 + g 74 -13.3 -3.22774 | gap 1 AGCCTGCGGGTCTGA GCG-GCGGCGAG GAA CTTGCCGCGCGC TTCATCGTAGGTCTG TERM 2537 3174849 - 3174813 - R 100 -22.5 -4.15565 | opp_overlap 3174813 TCGACCACCCCAAAA TGCAAACAGGCGACGCA TGG TGCGTCGCCTGTCTACA TTGATGCCGGGGGTC TERM 2538 3174813 - 3174849 + r 90 -18.1 -3.14344 | opp_overlap 3174813 TCGACCACCCCAAAA TGCAAACAGGCGACGCA TGG TGCGTCGCCTGTCTACA TTGATGCCGGGGGTC Rpic_3046 3176101 - 3174893 - | Ribonucleoside-diphosphate reductase Rpic_3047 3179202 - 3176218 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 2539 3178899 - 3178936 + g 78 -12.7 -3.52234 | gap 1, opp_overlap 3178894, overlap 3178926 CGATATGGAACGTGC CGCCGTTCGGGCGGCTGC GCA GCAG-TGCGCGAACGACG TTCTGCGTTTGTTGG TERM 2540 3178926 - 3178943 + g 70 -6.3 -4.24342 | gap 1, overlap 3178899 GGCTGCGCAGCAGTG CGC-GAAC GAC GTTCTGCG TTTGTTGGTCGACCA TERM 2541 3179653 - 3179685 + H 90 -14.8 -3.55622 | ATGTGTGCGGCGCAC TGCACCGGTGCACG CGTGC CGCGCACCGGGGCA TTTCCCGACATTCCC TERM 2542 3180739 - 3180709 - g 77 -11.1 -3.72324 | gap 1, overlap 3180735 CATCGCCATGAACAA GCCGGTCAACGCCG TGCT CGGCAA-GACCGGC ATGGCGGCGCCCACG Rpic_3048 3179852 - 3181882 + | hypothetical protein Rpic_3049 3181913 - 3182113 + | hypothetical protein TERM 2543 3182532 - 3182502 - g 81 -16.8 -2.63102 | ACTACCTGGACAGCA GCGCCGGCAACGCG CAG CGCGTCTCCGGCAC GCCACACAGCTACCC Rpic_3050 3182150 - 3184309 + | phospholipase C, phosphocholine-specific TERM 2544 3184377 - 3184346 - T 100 -15.8 -4.15833 | opp_overlap 3184342 3184347, overlap 3184347 ATCAGCAGGGGAAAA CGCGGGCAGCCTTC GAAA GGAGGCTGCCCGCT TGCGTTTCGGCGTCC TERM 2545 3184376 - 3184347 - T 90 -19.3 -3.09018 | opp_overlap 3184342 3184347, overlap 3184346 TCAGCAGGGGAAAAC GCGGGCAGCCTTC GAAA GGAGGCTGCCCGC TTGCGTTTCGGCGTC TERM 2546 3184347 - 3184376 + T 100 -21.5 -3.28001 | opp_overlap 3184347 3184346, overlap 3184342 TCAGCAGGGGAAAAC GCGGGCAGCCTTC GAAA GGAGGCTGCCCGC TTGCGTTTCGGCGTC TERM 2547 3184661 - 3184676 + T 71 -6.1 -4.371 | CACGCGAGCCTCGGA CCGTG ACGCTC CACGG TTTTACTGTCGTGCG TERM 2548 3184906 - 3184929 + T 82 -11.6 -3.97368 | TTACCGCCGTGTGCC GGCGCCGCGC CGAG GTGCGCCGCC TTTCTACCTTGGCGA Rpic_3051 3185560 - 3184964 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 2549 3185325 - 3185310 - G 70 -6.1 -4.24342 | CGGCGGACGAAGAAA TGCGC CGACAC GCGCA CGCCGCGCAACTGAT Rpic_3052 3187178 - 3185553 - | two component, sigma54 specific, transcriptional regulator, Fis family Rpic_3053 3189257 - 3187218 - | multi-sensor signal transduction histidine kinase TERM 2550 3189222 - 3189256 + g 76 -14.3 -3.07013 | gap 1, overlap 3189225 GCGGGCGGTGGACGG TGTTGCCCG-CGCGTC ACCC GACGCGTCGGGCGTCA TGTGTTGCCCCGGTC TERM 2551 3189225 - 3189253 + g 75 -14.6 -2.7535 | gap 1, overlap 3189222 GGCGGTGGACGGTGT TGCCCG-CGCGTC ACCC GACGCGTCGGGCG TCATGTGTTGCCCCG Rpic_3054 3189520 - 3189254 - | hypothetical protein Rpic_3055 3190474 - 3189566 - | cytochrome c assembly protein Rpic_3056 3190649 - 3192064 + | signal recognition particle protein Rpic_3057 3192133 - 3192681 + | phosphoribosyltransferase TERM 2552 3192730 - 3192699 - T 80 -11.7 -3.75169 | opp_overlap 3192705, overlap 3192705 CAGCACCGCAGCAAA CAAAAAGGGCGAC ACCTCA GTCGCCCTTTTTT GTTGCCCGCGCGTGG TERM 2553 3192705 - 3192724 + T 100 -10.7 -5.4505 | opp_overlap 3192699 3192705 CGCAGCAAACAAAAA GGGCGAC ACCTCA GTCGCCC TTTTTTGTTGCCCGC TERM 2554 3192724 - 3192705 - T 100 -10.7 -5.33405 | opp_overlap 3192705, overlap 3192699 CGCAGCAAACAAAAA GGGCGAC ACCTCA GTCGCCC TTTTTTGTTGCCCGC Rpic_3058 3193340 - 3192747 - | multiple antibiotic resistance (MarC)-related protein Rpic_3059 3194219 - 3193353 - | Procollagen-proline dioxygenase TERM 2555 3193925 - 3193911 - G 78 -10 -4.03234 | overlap 3193922 GGCGTCCGACAGAAA GTGCTG GAA CAGCAC GATGCGCGGCGTCTC Rpic_3060 3195047 - 3194286 - | Lytic transglycosylase catalytic TERM 2556 3194932 - 3194879 - G 90 -16.8 -3.34398 | gap 3, opp_overlap 3194895 3194896, overlap 3194877 CGTTGCTGGCAAAGA CCGGGCGCAGCGGACGGCTGTCGGCCA CCG CGGCAGACAGC-G-C-GCTGCGCACGG AGTCCGCCAGGTATT TERM 2557 3195018 - 3194994 - G 72 -13.5 -3.14132 | CGTGCCCGCGAGCAA CGTCCCCGCGC ACA GCGCAGTGACG ATCAGGCGGGCGGAA Rpic_3061 3196794 - 3195070 - | prolyl-tRNA synthetase Rpic_3062 3197015 - 3197722 + | NUDIX hydrolase Rpic_3063 3197728 - 3198357 + | Protein of unknown function CNP1-like protein TERM 2558 3198397 - 3198418 + T 100 -14.5 -4.55689 | opp_overlap 3198397 GCGCTCAAGCACAAA GGCCAACCT CGCA AGGTTGGCC TTTTCTATCGATGCT TERM 2559 3198418 - 3198397 - T 95 -14.5 -4.05446 | opp_overlap 3198397 GCGCTCAAGCACAAA GGCCAACCT CGCA AGGTTGGCC TTTTCTATCGATGCT Rpic_3064 3199574 - 3198450 - | glutamate 5-kinase Rpic_3065 3200702 - 3199608 - | GTP-binding protein Obg/CgtA TERM 2560 3200883 - 3200852 - R 79 -15.2 -2.93447 | opp_overlap 3200857 3200858, overlap 3200858 TTAACGGCCAGAAAC GAAAAAGCCCCGCA CGGG TGCGGGGCCTTTGC ACTACAAGGCTGAAT TERM 2561 3200857 - 3200878 + r 77 -11.5 -3.59979 | opp_overlap 3200852 3200858, overlap 3200858 GGCCAGAAACGAAAA AGCCCCGCA CGGG TGCGGGGCC TTTGCACTACAAGGC TERM 2562 3200877 - 3200858 - R 100 -15 -5.04601 | opp_overlap 3200857 3200858, overlap 3200852 GCCAGAAACGAAAAA GCCCCGCA CGGG TGCGGGGC CTTTGCACTACAAGG TERM 2563 3200858 - 3200877 + r 77 -15 -2.75844 | opp_overlap 3200858 3200852, overlap 3200857 GCCAGAAACGAAAAA GCCCCGCA CGGG TGCGGGGC CTTTGCACTACAAGG Rpic_3066 3201158 - 3200898 - | ribosomal protein L27 TERM 2564 3201116 - 3201143 + g 100 -11.2 -5.37043 | overlap 3201117 GCTTCGACTCGGAAT CGCGGCCGTTCC GTGT GGAACCGCCGCC TTTTTTCTGTGCCAT TERM 2565 3201117 - 3201142 + g 89 -14.7 -3.81141 | overlap 3201116 CTTCGACTCGGAATC GCGGCCGTTCC GTGT GGAACCGCCGC CTTTTTTCTGTGCCA Rpic_3067 3201507 - 3201196 - | ribosomal protein L21 Rpic_3068 3201797 - 3202774 + | Polyprenyl synthetase TERM 2566 3202924 - 3202907 - f 76 -12.7 -3.33361 | opp_overlap 3202907, overlap 3202898 GATCAAGGACATCAA GCCCAGC AATT GCTGGGC TTTTTTGTTTCTGAA TERM 2567 3202907 - 3202924 + F 100 -12.7 -5.72622 | opp_overlap 3202898 3202907 GATCAAGGACATCAA GCCCAGC AATT GCTGGGC TTTTTTGTTTCTGAA TERM 2568 3203340 - 3203358 + G 84 -12.4 -4.00038 | opp_overlap 3203322 AACGACGCTGTCGAT CGCCACGG CCA TCGTGGCG TTTCTCATCATCGTG Rpic_3069 3203047 - 3204321 + | protein of unknown function DUF21 TERM 2569 3205535 - 3205525 - g 72 -6.8 -4.26076 | TGAGCCGGAGCAAAA GCAG TTG CTGC TCGACGTAATCAAGC Rpic_3070 3204581 - 3206308 + | type IV-A pilus assembly ATPase PilB Rpic_3071 3206353 - 3207627 + | type II secretion system protein TERM 2570 3207654 - 3207679 + G 81 -11.1 -4.05446 | AGATGTTCGTCATCC CCACGTTGGCG CAAC TGCCGGCGTGG TTTGTAGTTGCCGCA Rpic_3072 3207632 - 3208513 + | Prepilin peptidase Rpic_3073 3208527 - 3209141 + | dephospho-CoA kinase Rpic_3074 3209277 - 3210035 + | protein of unknown function DUF1342 Rpic_3075 3210044 - 3210247 + | protein of unknown function DUF329 Rpic_3076 3210689 - 3210240 - | NUDIX hydrolase Rpic_3077 3211563 - 3210679 - | protein of unknown function DUF815 Rpic_3078 3212809 - 3211580 - | arginine biosynthesis bifunctional protein ArgJ TERM 2571 3212212 - 3212238 + g 71 -13 -3.02144 | opp_overlap 3212188 3212178 3212222 CCACATCGGCATCGG TGGCGATGAAGC CGA GCATCGTCGCCA TGTTCGGACGGATCA TERM 2572 3212856 - 3212828 - R 84 -11.7 -4.10657 | overlap 3212831 GCACACCTTTCAAAA TGAGGATGCCCGC ATT GCGGGCATCGTGA ATCAACAGAAAACAG TERM 2573 3212853 - 3212831 - R 76 -13.4 -3.08508 | overlap 3212828 CACCTTTCAAAATGA GGATGCCCGC ATT GCGGGCATCG TGAATCAACAGAAAA Rpic_3079 3215688 - 3212884 - | preprotein translocase, SecA subunit TERM 2574 3214563 - 3214573 + g 72 -6.8 -4.3129 | GGAACGTGATGGTCG CCAG CGT CTGG TTTTCCTGCTGGATC TERM 2575 3214853 - 3214875 + g 74 -2.7 -4.72986 | gap 1 TTCTCGTGACCGGAT TCG-GTCAGG TAGA CCTGGTGCGA TTTTTCGTCGACGTA TERM 2576 3215781 - 3215810 + r 74 -12.1 -3.14132 | opp_overlap 3215781 3215780 AGGGTTGGCGCAAAG GCGGGAGTTTAGC ATGT GCAAAACACCCGC TTGATGGCAGCAGAA Rpic_3080 3216904 - 3215939 - | Peptidase M23 TERM 2577 3216979 - 3216927 - H 83 -2.5 -5.24129 | gap 1, overlap 3216928 3216946 TTTCCGGACAAAAAA GCTGCCCACCGGCACGAAAGGGCG ATGAAG CGCCCTACAATGCCGGCATGC-GA ATCTTTGTTCATCCC Rpic_3081 3216974 - 3217495 + | hypothetical protein TERM 2578 3217520 - 3217493 - T 82 -12.8 -3.57144 | opp_overlap 3217499, overlap 3217499 GCGGCCAGGCCCAAA TAAAAAGCGCCC CGCA GGGCGCTTTTTT CATGGGTACAAACGC TERM 2579 3217514 - 3217499 - T 100 -11.8 -5.27938 | opp_overlap 3217499, overlap 3217493 AGGCCCAAATAAAAA GCGCCC CGCA GGGCGC TTTTTTCATGGGTAC TERM 2580 3217499 - 3217514 + T 100 -11.8 -5.1675 | opp_overlap 3217499 3217493 AGGCCCAAATAAAAA GCGCCC CGCA GGGCGC TTTTTTCATGGGTAC Rpic_3082 3218462 - 3217545 - | UDP-3-0-acyl N-acetylglucosamine deacetylase Rpic_3083 3219208 - 3218708 - | Redoxin domain protein TERM 2581 3218877 - 3218904 + g 71 -4.1 -4.4767 | gap 1 AGTTTGCTCGTGAAC TCCGCGCTGCCG TCGCC CAGCA-TGCGGA TTTTGTCGTCGGTGC TERM 2582 3219321 - 3219283 - R 100 -24.7 -4.07687 | opp_overlap 3219288, overlap 3219286 AGCCGGTTCTTAAAA CGAGACCGCCCGCGTGA ACGAA TCACGCGGGCGGTCTTG GGAGACAACACCATC TERM 2583 3219318 - 3219286 - R 100 -25 -3.08032 | opp_overlap 3219288, overlap 3219283 CGGTTCTTAAAACGA GACCGCCCGCGTGA ACGAA TCACGCGGGCGGTC TTGGGAGACAACACC TERM 2584 3219288 - 3219316 + r 100 -21.8 -3.01712 | opp_overlap 3219286 3219283 GTTCTTAAAACGAGA CCGCCCGCGTGA ACGAA TCACGCGGGCGG TCTTGGGAGACAACA Rpic_3084 3220799 - 3219600 - | cell division protein FtsZ TERM 2585 3219932 - 3219960 + g 74 -13.1 -3.23598 | opp_overlap 3219921, overlap 3219925 CGAAGATGACGGTGG CATCTTCCGCGGC ATA GCTGCGGATGGTG TTCATCACTTCCTTG TERM 2586 3220165 - 3220204 + g 75 -12.2 -3.55444 | opp_overlap 3220173, overlap 3220168 ATCACTGTCTTCACG TCTTCAAAGTCGACGTTC ACCA GACCGTCGACGTTGATGA TTTCCGCAATGCCGG TERM 2587 3220196 - 3220173 - G 72 -11 -3.54424 | opp_overlap 3220168 3220165 CTTCACGTCTTCAAA GTCGACGTTC ACCA GACCGTCGAC GTTGATGATTTCCGC Rpic_3085 3222172 - 3220940 - | cell division protein FtsA Rpic_3086 3223080 - 3222169 - | Polypeptide-transport-associated domain protein FtsQ-type Rpic_3087 3224113 - 3223118 - | D-alanine/D-alanine ligase Rpic_3088 3225561 - 3224110 - | UDP-N-acetylmuramate/alanine ligase Rpic_3089 3226675 - 3225575 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Rpic_3090 3227913 - 3226672 - | cell division protein FtsW Rpic_3091 3229550 - 3227910 - | UDP-N-acetylmuramoylalanine/D-glutamate ligase Rpic_3092 3230728 - 3229559 - | phospho-N-acetylmuramoyl-pentapeptide-transferase Rpic_3093 3232180 - 3230744 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase Rpic_3094 3233721 - 3232177 - | UDP-N-acetylmuramyl-tripeptide synthetase Rpic_3095 3235505 - 3233718 - | Peptidoglycan glycosyltransferase TERM 2588 3235287 - 3235299 + g 71 -9.1 -3.73068 | CGGCAATTCCAGCGT GCGCT GGA AGCGC TTCTTGCCTTCAGCC Rpic_3096 3235846 - 3235502 - | cell division protein FtsL Rpic_3097 3236822 - 3235863 - | S-adenosyl-methyltransferase MraW TERM 2589 3236626 - 3236593 - G 71 -13.2 -3.04144 | gap 1, opp_overlap 3236590 3236593 3236598, overlap 3236598 CTGTCATGCTCAATA GCGAAGCGGGCATCC TCTAC GG-TGCCCGCTTCGG TGATTGCTGCCGGGT TERM 2590 3236593 - 3236626 + g 75 -14.6 -2.78018 | opp_overlap 3236593 3236598, overlap 3236590 3236598 CTGTCATGCTCAATA GCGAAGCGGGCATC CTCTAC GGTGCCCGCTTCGG TGATTGCTGCCGGGT Rpic_3098 3237260 - 3236832 - | MraZ protein Rpic_3099 3238296 - 3237643 - | hypothetical protein Rpic_3100 3238677 - 3239855 + | porin Gram-negative type TERM 2591 3239905 - 3239920 + F 89 -10.4 -4.65895 | opp_overlap 3239905 TGGCGGGCGCAGGAA GGCACC TTCG GGTGCC TTTTTGCATGGCCGC Rpic_3101 3240043 - 3241359 + | metabolite/H+ symporter, major facilitator superfamily (MFS) Rpic_3102 3241815 - 3241381 - | Class I peptide chain release factor TERM 2592 3242301 - 3242348 + G 75 -10.3 -3.85698 | overlap 3242302 TGGGGCCGCTGGCCA CCGCGCTGCCTGCACCCGGCC TGTGGT GGCTGGTAGCCGGTGGCGCGC TTTATACGACGGGCA TERM 2593 3242302 - 3242347 + G 73 -13.8 -2.91276 | overlap 3242301 GGGGCCGCTGGCCAC CGCGCTGCCTGCACCCGGCC TGTGGT GGCTGGTAGCCGGTGGCGCG CTTTATACGACGGGC Rpic_3103 3241859 - 3242476 + | channel protein, hemolysin III family TERM 2594 3242520 - 3242481 - T 70 -13 -2.87211 | opp_overlap 3242488 3242493, overlap 3242484 3242493 ACGTCGGCTGACACA CCATGAAAAAAACCGCGA TTCC TCGCGGTTTTCTTCTTGC AGCTATGCAGACTCA TERM 2595 3242517 - 3242484 - T 73 -13.3 -2.69151 | opp_overlap 3242488 3242493, overlap 3242481 3242493 TCGGCTGACACACCA TGAAAAAAACCGCGA TTCC TCGCGGTTTTCTTCT TGCAGCTATGCAGAC TERM 2596 3242488 - 3242513 + T 73 -10.5 -3.64487 | opp_overlap 3242484 3242481 3242493, overlap 3242493 CTGACACACCATGAA AAAAACCGCGA TTCC TCGCGGTTTTC TTCTTGCAGCTATGC TERM 2597 3242508 - 3242493 - T 100 -10.4 -5.56568 | opp_overlap 3242488 3242493, overlap 3242484 3242481 ACACCATGAAAAAAA CCGCGA TTCC TCGCGG TTTTCTTCTTGCAGC TERM 2598 3242493 - 3242508 + T 100 -10.4 -4.89477 | opp_overlap 3242493 3242484 3242481, overlap 3242488 ACACCATGAAAAAAA CCGCGA TTCC TCGCGG TTTTCTTCTTGCAGC Rpic_3104 3244242 - 3242533 - | AMP-dependent synthetase and ligase TERM 2599 3244274 - 3244287 + r 100 -3.1 -5.76949 | GATTGTCGATTTTTT CGAAT GGTC GTTCG TTTTTTTTCGGCATC Rpic_3105 3245491 - 3244394 - | putative zinc protease protein TERM 2600 3244967 - 3244951 - G 75 -2.9 -4.7373 | overlap 3244952 3244954 3244955 CCAGCTCATGAAAAA TCAGCCG CGC CAGCTCA CCTTCGGGCAGGCCG Rpic_3106 3247598 - 3245502 - | molybdopterin oxidoreductase Rpic_3107 3248676 - 3247681 - | transcriptional regulator, LacI family TERM 2601 3249069 - 3249042 - g 75 -12 -3.53012 | opp_overlap 3249043, overlap 3249054 TCCTGCGCCGCGAAA CCGTGGCCAACA CGTT TCTCGGCCACGG CGTCGCCATTCCGCA Rpic_3108 3248894 - 3251434 + | phosphoenolpyruvate-protein phosphotransferase Rpic_3109 3251431 - 3252387 + | 1-phosphofructokinase TERM 2602 3253382 - 3253417 + G 85 -11.8 -4.1552 | gap 1, overlap 3253401 ATTGCCCCCGGGATG GTCGGCGGC-ATGCTGG CCG CCAGCCTGGGCGCCGGC TTTCTTGGCGGCATC Rpic_3110 3252437 - 3254152 + | PTS system, fructose subfamily, IIC subunit TERM 2603 3254220 - 3254209 - f 74 -5.8 -4.56597 | TCTCTGTCTCAAAAA CGCT CAAA AGCG ACGCAACCGGCCCGA Rpic_3111 3254300 - 3255457 + | Extracellular ligand-binding receptor TERM 2604 3255501 - 3255477 - T 100 -10 -5.42259 | opp_overlap 3255481, overlap 3255481 GCATCCCTAAAAAAA GAAACCGGGC CAGGT GCCCGGTTTT TTTACATTCAAGCCG TERM 2605 3255481 - 3255497 + T 100 -10.8 -5.53288 | opp_overlap 3255477 3255481 CCCTAAAAAAAGAAA CCGGGC CAGGT GCCCGG TTTTTTTACATTCAA TERM 2606 3255497 - 3255481 - T 100 -10.8 -5.20328 | opp_overlap 3255481, overlap 3255477 CCCTAAAAAAAGAAA CCGGGC CAGGT GCCCGG TTTTTTTACATTCAA Rpic_3112 3256711 - 3255509 - | acetylornithine deacetylase (ArgE) Rpic_3113 3256978 - 3258168 + | amidohydrolase TERM 2607 3258194 - 3258209 + T 100 -10.4 -5.61881 | opp_overlap 3258194 CGCGAACGCGTAAAA GCCTCC TAAC GGAGGC TTTTTGTTTTTAGGG TERM 2608 3258209 - 3258194 - T 84 -10.4 -4.14392 | opp_overlap 3258194 CGCGAACGCGTAAAA GCCTCC TAAC GGAGGC TTTTTGTTTTTAGGG TERM 2609 3258340 - 3258304 - T 100 -19.6 -4.86001 | opp_overlap 3258310, overlap 3258308 AGCAGTGCATAAAAA CAAACACCCCAGCTCT GTGTA AGAGCTGGGGTGTTGG AGGGGAGAGCCTGGC TERM 2610 3258336 - 3258308 - T 100 -19 -4.96501 | opp_overlap 3258310, overlap 3258304 GTGCATAAAAACAAA CACCCCAGCTCT GTGTA AGAGCTGGGGTG TTGGAGGGGAGAGCC TERM 2611 3258310 - 3258334 + T 83 -15.8 -3.01712 | opp_overlap 3258308 3258304 GCATAAAAACAAACA CCCCAGCTCT GTGTA AGAGCTGGGG TGTTGGAGGGGAGAG TERM 2612 3260964 - 3260975 + T 71 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC Rpic_3114 3264900 - 3264124 - | Enoyl-CoA hydratase/isomerase TERM 2613 3264160 - 3264177 + g 71 -7.7 -4.09173 | overlap 3264145 3264143 3264163 TGCACGCTTTTCGAC GAAGGCG CGCA TGCCTTC TTTCTGGTCTTCTGT Rpic_3115 3264984 - 3265772 + | phenylacetate degradation, enoyl-CoA hydratase paaB Rpic_3116 3265783 - 3266244 + | phenylacetic acid degradation protein PaaD Rpic_3117 3266449 - 3267753 + | phenylacetate-CoA ligase Rpic_3118 3268910 - 3267768 - | MltA domain protein Rpic_3119 3268985 - 3269218 + | putative transmembrane protein Rpic_3120 3269600 - 3269226 - | ApaG domain protein Rpic_3121 3269743 - 3270468 + | Ribulose-phosphate 3-epimerase Rpic_3122 3270465 - 3271211 + | phosphoglycolate phosphatase Rpic_3123 3271598 - 3273130 + | anthranilate synthase component I Rpic_3124 3273147 - 3273716 + | glutamine amidotransferase of anthranilate synthase Rpic_3125 3273716 - 3274147 + | putative signal peptide protein TERM 2614 3274970 - 3274934 - g 88 -17.3 -3.0464 | AATCCATCCGGAAGA CTTCGGGCTGCAGATGG TCT CCAACCGCAGCCTGAAG GTGGCCGACGCCGAC TERM 2615 3275068 - 3275024 - g 76 -9.2 -4.17316 | gap 2, opp_overlap 3275044 AGCGCTGGAAAACAA GCCGGGCACGC-C-GCGCGAGA TCG TCTCGCTCAACGCGGGCGCGGC GCTGTATGCAGCCAA Rpic_3126 3274161 - 3275198 + | anthranilate phosphoribosyltransferase Rpic_3127 3275200 - 3276003 + | Indole-3-glycerol-phosphate synthase Rpic_3128 3276016 - 3276675 + | adenylate cyclase Rpic_3129 3276672 - 3277463 + | uracil-DNA glycosylase TERM 2616 3277586 - 3277599 + T 70 -3.8 -4.62336 | overlap 3277567 3277566 CTTCGACTCTCCGAG GGTC AAATTC GACC TTTTTCGGCTCGAGT TERM 2617 3277753 - 3277798 + T 74 -11.1 -3.53012 | gap 2, opp_overlap 3277778 TCGTCCAGGGTCGGG GGCTCAGCGCAGTCGCGGTGG AAGATC CCGCCGC--CGGCGCGGAGCC TTTCAGCCGCCGGCC Rpic_3131 3280034 - 3277818 - | protein of unknown function DUF893 YccS/YhfK Rpic_3132 3281917 - 3280046 - | peptidase M61 domain protein TERM 2618 3280340 - 3280322 - G 72 -11.6 -3.48395 | opp_overlap 3280327, overlap 3280281 3280323 ATCGCCGGCAGACAA TCCGGCGC GCT GCGCCGGG CTGCCGTCGAAGACC TERM 2619 3280339 - 3280323 - G 75 -15.1 -2.68823 | opp_overlap 3280327, overlap 3280281 3280322 TCGCCGGCAGACAAT CCGGCGC GCT GCGCCGG GCTGCCGTCGAAGAC TERM 2620 3280501 - 3280530 + g 75 -7.7 -4.20516 | overlap 3280502 CTTCGCTCAACTGGC GCACCAGCGTGCG CAGG CGCACACCGGTGG TTTCTTCCATCAGGG Rpic_3133 3282992 - 3281976 - | quinone oxidoreductase, YhdH/YhfP family TERM 2621 3283038 - 3283056 + r 76 -13.1 -3.35992 | opp_overlap 3283038 GCGCCCAAAGAAAAA GCGCCGG ATCGA CCGGCGC TTCCTTCGCGTGAAT TERM 2622 3283056 - 3283038 - R 100 -13.1 -5.27335 | opp_overlap 3283038 GCGCCCAAAGAAAAA GCGCCGG ATCGA CCGGCGC TTCCTTCGCGTGAAT Rpic_3134 3283817 - 3283071 - | putative thiol:disulfide interchange protein TERM 2623 3283871 - 3283849 - R 75 -8.4 -4.2687 | CCGAAAAACCACAAA TCCGCTGAGA GTG CCTCAGCCGA GTGCGTGCCTGATCA Rpic_3135 3285159 - 3283864 - | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family TERM 2624 3284301 - 3284260 - G 90 -17.1 -3.30124 | CGTGATGTTCGACAA GCGCCCGAAGCGGGCGGCG ATGG CGCCACCCGCCGCGGCCTC GACCGCGCGGCACAG Rpic_3136 3285525 - 3285914 + | hypothetical protein TERM 2625 3285979 - 3285989 + G 72 -8.2 -4.07568 | overlap 3285976 CTGCTGACGGTACCG GCCG CCT CGGC TTTTGCCGCGCCGCC Rpic_3137 3285925 - 3286263 + | conserved hypothetical signal peptide protein TERM 2626 3286662 - 3286629 - g 91 -16.8 -3.50853 | GCTGCTCAAGCAGAA GATGGTCCGCCATG GAAATA CATGGCGGGCCATC GGCGCGTATCACTCG Rpic_3138 3286288 - 3286761 + | Lytic transglycosylase catalytic Rpic_3139 3287170 - 3286793 - | hypothetical protein TERM 2627 3287924 - 3287914 - g 75 -6.8 -4.4261 | TTTCGAAGATGAAAA CGTG ATC CACG TCGCCGGCAAGGTCG Rpic_3140 3287582 - 3288676 + | GTP-binding protein YchF TERM 2628 3288720 - 3288700 - f 95 -14 -4.05714 | opp_overlap 3288700 ACGTCCAACGAGAAA GCCCCGCA GTGAT TGCGGGGC TTTTTTCATGGGCGA TERM 2629 3288700 - 3288720 + F 100 -14.7 -5.14563 | opp_overlap 3288700 ACGTCCAACGAGAAA GCCCCGCAG TGA TTGCGGGGC TTTTTTCATGGGCGA TERM 2630 3289810 - 3289796 - g 71 -10 -3.57263 | overlap 3289799 ATGCGCAGCGCGAAA CCATGC GCC GCATGG GCGCGAAGGCGTCGC Rpic_3141 3289015 - 3291303 + | GAF sensor signal transduction histidine kinase Rpic_3142 3291303 - 3291797 + | response regulator receiver protein TERM 2631 3292323 - 3292345 + G 75 -12 -3.44146 | overlap 3292326 CATCGTGCGCACCTG GAATGCGGCG TCG CGCAGCATTC TTGGTTATGCGCGCG TERM 2632 3293577 - 3293587 + G 74 -4.6 -4.56597 | CGGCAGCGGCCTGGA CGTG GTG CGCG TTTTTGCCGAGCGGC Rpic_3143 3291823 - 3293781 + | multi-sensor hybrid histidine kinase TERM 2633 3293856 - 3293826 - T 87 -16.9 -3.02511 | CCTAGCGGCGCAACA GGCCCCATGCTGC AGATA GCAGCATGGCGCC TACCACGGCGGCCGT Rpic_3144 3294054 - 3293812 - | hypothetical protein Rpic_3145 3294275 - 3295582 + | glutamyl-tRNA reductase Rpic_3146 3295692 - 3296774 + | peptide chain release factor 1 Rpic_3147 3296956 - 3297324 + | putative lipoprotein TERM 2634 3297348 - 3297385 + F 74 -6.8 -4.37092 | gap 1, overlap 3297351 CAACCGCACAGCCCC GCTCGCGGGCCCGCGCC ACATC GGC-CGGGCCCGTGTTA TTTTGTGCGCCCGAT TERM 2635 3297351 - 3297382 + F 100 -17.3 -4.30995 | gap 1, overlap 3297348 CCGCACAGCCCCGCT CGCGGGCCCGCGCC ACATC GGC-CGGGCCCGTG TTATTTTGTGCGCCC Rpic_3148 3297422 - 3298324 + | protein-(glutamine-N5) methyltransferase, release factor-specific TERM 2636 3298476 - 3298515 + F 82 -14.4 -3.23216 | gap 1 CCAAGAAGACGTATT GACTCATACCCAGTCGGTC CTC GACTGACTGGG-ATGGGGC TTGCTCGTGCTGGAA TERM 2637 3299345 - 3299380 + F 80 -11.3 -3.71793 | gap 2, opp_overlap 3299341 3299363, overlap 3299346 3299346 3299355 GTTCAATTGAATTTT C-T-TCCCCTGAGGGAC AACT GTCCCTCAGGGGGCATG TTGTCTCTTGCTGTC TERM 2638 3299346 - 3299377 + F 83 -16.6 -2.65097 | opp_overlap 3299341 3299363, overlap 3299345 3299346 3299355 TTCAATTGAATTTTC TTCCCCTGAGGGAC AACT GTCCCTCAGGGGGC ATGTTGTCTCTTGCT TERM 2639 3299346 - 3299378 + F 90 -15 -3.43033 | gap 1, opp_overlap 3299341 3299363, overlap 3299346 3299345 3299355 TTCAATTGAATTTTC T-TCCCCTGAGGGAC AACT GTCCCTCAGGGGGCA TGTTGTCTCTTGCTG TERM 2640 3299355 - 3299387 + F 72 -11.4 -3.32022 | gap 1, opp_overlap 3299341 3299363, overlap 3299346 3299346 3299345 ATTTTCTTCCCCTGA GGGACAAC-TGTCCC TCAG GGGGCATGTTGTCTC TTGCTGTCTGGGAAG TERM 2641 3300845 - 3300821 - g 91 -9.3 -4.77165 | opp_overlap 3300826 GGCGCCACAAGAAAA TCAAGGGGGCT TAC AACCCCTTTGA TCCAGCTTGGGAAAT Rpic_3149 3299425 - 3301122 + | RNA-directed DNA polymerase Rpic_3150 3301278 - 3301589 + | glutaredoxin-like protein TERM 2642 3302097 - 3302109 + G 79 -10.5 -4.07568 | opp_overlap 3302078 CGGAATCGTGTTTCC GCCCG TGC CGGGC TTTTACCAGCGCCCC Rpic_3151 3301609 - 3302232 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2643 3302260 - 3302234 - T 77 -14.5 -2.82933 | opp_overlap 3302245 GTTCAACGGACTAGA CGCTGATCAGC CGACT GCCGATCAGCG GTGGTGGTAATTGAA Rpic_3152 3302425 - 3302255 - | hypothetical protein TERM 2644 3302368 - 3302338 - G 93 -16 -3.85698 | CCGGTGCGGCATAAA CCGGCGCAGGCGCC ACA GCCACCGGCGCCGG ATACACAGCACATCC TERM 2645 3302493 - 3302473 - R 72 -11.8 -3.32963 | ATGTCGACGTTATAA GCCGGCGC GAGCG ACGCCGGC GTCATGCGGGTGTAA TERM 2646 3302544 - 3302525 - R 71 -7.2 -4.27316 | opp_overlap 3302525 3302528, overlap 3302526 CGGTGTAACCGAAAA CTACGAAC GGGT GTTCGTAA GTTCACTGCTTAGGC Rpic_3153 3303287 - 3302547 - | conserved hypothetical signal peptide protein TERM 2647 3304955 - 3304995 + G 74 -13.2 -3.29511 | ACTTTGAAGGCCCCG CACTGGCCAAGCTGGCGC CGAAT GCGCCGGTTGAGCCGGTG TTCTCGGCAGATGCC Rpic_3154 3303622 - 3305184 + | periplasmic glucan biosynthesis protein MdoG Rpic_3155 3305187 - 3307745 + | glycosyl transferase family 2 TERM 2648 3307771 - 3307799 + F 100 -18.1 -4.43309 | CCACTTGAAGTGCCG CGCCCCACCAGCG TCT TGCCGGTGGGGCG TTTTACTTCCCGTTA Rpic_3156 3307936 - 3308259 + | putative signal peptide protein TERM 2649 3308332 - 3308275 - f 72 -12.8 -3.04144 | opp_overlap 3308288 CGCCTAGCGGCAACA GGCAGC-TACATCGGCAACGGGCCGCTC ACAC GAGCGGCCCGTTGCTTTTGTACGCT-CG AATGCCCGCGCAATC TERM 2650 3308288 - 3308319 + F 100 -26 -4.4009 | opp_overlap 3308275 CAGGCAGCTACATCG GCAACGGGCCGCTC ACAC GAGCGGCCCGTTGC TTTTGTACGCTCGAA Rpic_3157 3308422 - 3308910 + | YbaK/prolyl-tRNA synthetase associated region TERM 2651 3309121 - 3309090 - g 93 -18.8 -3.29144 | opp_overlap 3309079 TGACGGGTCGCACAA GCGCGTCGAGTTTG ACAG CAACCTCGACGCGC CTGTGCCCGATGCGC Rpic_3158 3308920 - 3309144 + | zinc finger CDGSH-type domain protein Rpic_3159 3310808 - 3309141 - | ABC transporter related TERM 2652 3310934 - 3310906 - R 100 -14.6 -4.25104 | overlap 3310911 GCCGCTCGAGCAAAA GAAAAGGCGCCC ACCAG GGGCGCCCTTCC GATGCAGCAGCAGGC TERM 2653 3310929 - 3310911 - R 100 -13.1 -5.13722 | overlap 3310906 TCGAGCAAAAGAAAA GGCGCCC ACCAG GGGCGCC CTTCCGATGCAGCAG Rpic_3160 3311325 - 3310957 - | cytochrome o ubiquinol oxidase subunit IV Rpic_3161 3311954 - 3311325 - | cytochrome o ubiquinol oxidase, subunit III Rpic_3162 3313934 - 3311958 - | cytochrome o ubiquinol oxidase, subunit I Rpic_3163 3314906 - 3313944 - | ubiquinol oxidase, subunit II TERM 2654 3314695 - 3314709 + g 70 -11.4 -3.36273 | GAGTGCGACCAGTCG GGCTCG TAG CGAGCC TTGGTGTTGGACGCG TERM 2655 3315516 - 3315549 + r 71 -6.5 -4.18197 | opp_overlap 3315511, overlap 3315517 TAAGAACAATTCTCA TCTTGGAGAGGCCGC CGAA GCGGCCTCCCTGCGC TTTTCCCTACGGCCT Rpic_3164 3317207 - 3315564 - | natural resistance-associated macrophage protein TERM 2656 3316195 - 3316166 - G 73 -12.1 -3.38046 | overlap 3316164 3316194 GCCGCACGGCAAACA CGTCGCCGATCGC ATAC GCGGTCGACAACG ACACCGCACAGGCGC Rpic_3165 3317442 - 3317236 - | hypothetical protein TERM 2657 3317580 - 3317550 - R 75 -13.3 -2.91912 | opp_overlap 3317543, overlap 3317535 3317531 3317577 GGAGCGATGCAGATA CCGCTGCCTTGCC TGGGC GGCAAGTCAGCAG CAGGGGAAAACCGTG Rpic_3166 3319123 - 3317675 - | Carbohydrate-selective porin OprB TERM 2658 3318949 - 3318911 - G 71 -8.1 -4.20136 | overlap 3318940 ACCGTGAAAACCAAA GCGATCGCCGAAC-TCGCC TCC GGCAATGAGCGGCG-TCGC GGCAGCCGGCACCGA TERM 2659 3319065 - 3319030 - G 78 -3.8 -4.7373 | gap 1, overlap 3319031 3319032 CCATGGCAGCAAAAA TGG-GCGGACGGCAGCC CGC AGCAGCGGCGCGCACCA GCGAGATAAGTGCGC Rpic_3167 3319597 - 3319926 + | hypothetical protein TERM 2660 3320137 - 3320107 - f 100 -17.7 -4.07687 | opp_overlap 3320112, overlap 3320112 ACGCGCTCGCCAAAA GAAAACGGCCTCC GCGAG GGAGGCCGTTCTC GTGATGCTGGTGCCG TERM 2661 3320132 - 3320112 - f 100 -14 -5.07652 | opp_overlap 3320112, overlap 3320107 CTCGCCAAAAGAAAA CGGCCTCC GCGAG GGAGGCCG TTCTCGTGATGCTGG TERM 2662 3320112 - 3320132 + F 86 -14 -3.45023 | opp_overlap 3320107 3320112 CTCGCCAAAAGAAAA CGGCCTCC GCGAG GGAGGCCG TTCTCGTGATGCTGG Rpic_3168 3320311 - 3320427 + | hypothetical protein TERM 2663 3320520 - 3320489 - f 77 -8.2 -4.29738 | gap 1, overlap 3320474 3320490 GCACATTCATGAAAA GTGCCATCTTTACAC ATG GTGTAAAGATG-CAT AAAATCCATTGGGAT TERM 2664 3320538 - 3320525 - f 74 -5.3 -4.48877 | TAAAGATGCATAAAA TCCAT TGGG ATGGA AATCGAGTTCGCTGA Rpic_3169 3320534 - 3320830 + | plasmid maintenance system killer Rpic_3170 3320844 - 3321974 + | plasmid maintenance system antidote protein, XRE family Rpic_3171 3321984 - 3322454 + | hypothetical protein Rpic_3172 3325497 - 3322510 - | type I site-specific deoxyribonuclease, HsdR family TERM 2665 3325519 - 3325532 + r 81 -5.3 -4.78572 | GCCCCCCCAATTGTT CTCAT GGCA ATGAG TTTTGTTAGTTGCAG Rpic_3173 3326681 - 3325497 - | restriction modification system, type I Rpic_3174 3328354 - 3326681 - | UvrD/REP helicase Rpic_3175 3330255 - 3328351 - | SMC domain protein Rpic_3176 3331763 - 3330252 - | N-6 DNA methylase TERM 2666 3330778 - 3330761 - G 79 -5.5 -4.67982 | overlap 3330762 CGTTACGGAACAAAA CGCCGTG TGGC CACAGCA CTGCACAGCGGCCCT TERM 2667 3331441 - 3331430 - G 70 -2.2 -4.60041 | ACGCATCTCCAAAAA TGCC GTCG AGCA TGTCAGGGTTAGCCA Rpic_3177 3332551 - 3331760 - | hypothetical protein Rpic_3178 3334044 - 3332548 - | N-6 DNA methylase Rpic_3179 3334695 - 3334408 - | addiction module toxin, RelE/StbE family Rpic_3180 3335150 - 3334692 - | hypothetical protein TERM 2668 3335198 - 3335217 + H 73 -13.6 -2.73875 | overlap 3335195 3335180 GGGCTTGCCAGTCCT GCACCAGC TCGC GCTGGTGC TGATGTTGAGCCAGC Rpic_3181 3335347 - 3335577 + | hypothetical protein Rpic_3182 3335574 - 3335828 + | hypothetical protein Rpic_3183 3335872 - 3336597 + | hypothetical protein Rpic_3184 3337167 - 3336772 - | hypothetical protein Rpic_3185 3337676 - 3337164 - | hypothetical protein TERM 2669 3337409 - 3337443 + g 71 -7.8 -4.14243 | CGAACTTCTTCATAC GCGGATGGCGCGCA ATGTCGC TGCGTTCAATCCGC TTTTCGGGTGGCGTG TERM 2670 3337751 - 3337779 + r 89 -11.1 -4.15044 | overlap 3337740 3337753 3337754 CCTGCCCGTGCCGTG TGAGGGTGTTTGA CGG TCAAACACCCCTA TTTCTTGCCGGCCAC TERM 2671 3337753 - 3337777 + r 77 -11.5 -3.6761 | overlap 3337740 3337751 3337754 TGCCCGTGCCGTGTG AGGGTGTTTGA CGG TCAAACACCCC TATTTCTTGCCGGCC TERM 2672 3337754 - 3337776 + r 77 -15 -2.80244 | overlap 3337740 3337753 3337751 GCCCGTGCCGTGTGA GGGTGTTTGA CGG TCAAACACCC CTATTTCTTGCCGGC Rpic_3186 3337995 - 3337777 - | hypothetical protein TERM 2673 3338058 - 3338086 + H 72 -2.9 -4.84359 | opp_overlap 3338055, overlap 3338059 TCCATCGGACAAGCA TCTGGACGCTTCG CTT CGCGGCGTCGGGC TTTTTCTGAAAGTAG TERM 2674 3338181 - 3338199 + H 70 -12.4 -2.87132 | CCCTTAATCCGGGGT CTCGGGGC GTA GCCCTGAG TGTCTGCGACGGGCG TERM 2675 3338447 - 3338482 + H 90 -14.8 -3.5936 | overlap 3338440 3338448 GGGCTTCTGCGACGC ATTTGCGGTGAGTCTG GAGT CAGACTCACCGCACAC TTTCAACGCTTTCCG TERM 2676 3338448 - 3338481 + H 86 -18.3 -2.75294 | overlap 3338447 3338440 GGCTTCTGCGACGCA TTTGCGGTGAGTCTG GAGT CAGACTCACCGCACA CTTTCAACGCTTTCC Rpic_3187 3338908 - 3339087 + | hypothetical protein Rpic_3188 3340870 - 3340082 - | peptidase C24, Calicivirus polyprotein ORF 1 TERM 2677 3340830 - 3340852 + g 70 -7.6 -4.04326 | CTGCCCCAACGCGCC GCCGGATCGC GTA GAGATCCGAC TTTCCTCTTTGCTTC Rpic_3189 3341327 - 3342040 + | hypothetical protein Rpic_3190 3343106 - 3342075 - | hypothetical protein Rpic_3191 3345022 - 3343250 - | hypothetical protein TERM 2678 3344234 - 3344207 - G 93 -3.3 -5.29445 | overlap 3344219 3344222 CTTGAACAACAAAAA GGCCAGCAGCA AGTACG CACCGATGGCC GCCACAGGCGGGCCA Rpic_3192 3345309 - 3345025 - | hypothetical protein Rpic_3193 3346070 - 3345327 - | P-type conjugative transfer protein TrbJ TERM 2679 3345920 - 3345951 + g 71 -10.2 -3.66772 | opp_overlap 3345912 GCACATACTGCTGCA CCTGCTGCTCAT AGGCTTGG ATGAGCTGCAGG TTGTTCAGGATTTGC Rpic_3194 3346261 - 3346079 - | hypothetical protein TERM 2680 3346205 - 3346247 + g 71 -4.2 -4.47679 | gap 1, overlap 3346201 AACGACAAGAACAAT CGAGAAGGCCTTG-GCCAT TTGCGC GTGGCTCAGGGGTTTCTTG TTTGTGTTTTCCATT Rpic_3195 3347174 - 3346281 - | hypothetical protein TERM 2681 3347107 - 3347121 + g 72 -3.4 -4.63486 | ATGGCTTGGGGCTGT GCCACG GCA TGAGGC TTTTCTTGGGAAGCT Rpic_3196 3347416 - 3347216 - | hypothetical protein TERM 2682 3347355 - 3347379 + g 83 -2.7 -5.12068 | opp_overlap 3347345, overlap 3347356 AAGATGGCCCTCCGC TGCTCTTCCGG CAG TCGGTAGACCG TTTTTCTTGGCTCTG TERM 2683 3347445 - 3347482 + r 100 -13.3 -4.57073 | overlap 3347446 3347447 TCAGATCGCTTTGGT TAGCGGCGCCTGGTCGT TCCA GCGACCAAGCGCCGCGC TTTTTGGGCCCGCTG TERM 2684 3347446 - 3347481 + r 93 -16.8 -3.33922 | overlap 3347445 3347447 CAGATCGCTTTGGTT AGCGGCGCCTGGTCGT TCCA GCGACCAAGCGCCGCG CTTTTTGGGCCCGCT TERM 2685 3347447 - 3347480 + r 95 -20.3 -2.60032 | overlap 3347446 3347445 AGATCGCTTTGGTTA GCGGCGCCTGGTCGT TCCA GCGACCAAGCGCCGC GCTTTTTGGGCCCGC Rpic_3197 3347932 - 3347639 - | hypothetical protein Rpic_3198 3348965 - 3348012 - | hypothetical protein TERM 2686 3348042 - 3348059 + g 80 -4.8 -4.82901 | overlap 3348046 GGCGTACTGCAGGCG CTCGCG TCTCGC CGTGAG TTTTTCTGCGAGACG TERM 2687 3348046 - 3348074 + g 76 -9.5 -4.07568 | overlap 3348042 TACTGCAGGCGCTCG CGTCTCGCCGTGA GTT TTTCTGCGAGACG TTTTGGAAGACGCGC Rpic_3199 3349183 - 3348968 - | hypothetical protein Rpic_3200 3349377 - 3350021 + | hypothetical protein Rpic_3201 3351051 - 3349996 - | integrase family protein TERM 2688 3351144 - 3351106 - R 82 -11 -3.89614 | opp_overlap 3351108 3351109, overlap 3351109 3351112 TTCAACGCCCAGAAA GCACAAGGGGTCACGTGA AAT TCACGTAACCCCTTGATT TTATTGGTGCCGGCT TERM 2689 3351108 - 3351142 + r 100 -15.8 -4.71426 | opp_overlap 3351106 3351109 3351112, overlap 3351109 CAACGCCCAGAAAGC ACAAGGGGTCACGTGA AAT TCACGTAACCCCTTGA TTTTATTGGTGCCGG TERM 2690 3351109 - 3351141 + r 100 -19.3 -3.42374 | opp_overlap 3351106 3351109 3351112, overlap 3351108 AACGCCCAGAAAGCA CAAGGGGTCACGTGA AAT TCACGTAACCCCTTG ATTTTATTGGTGCCG TERM 2691 3351141 - 3351109 - R 100 -21.5 -3.0169 | opp_overlap 3351109 3351108, overlap 3351106 3351112 AACGCCCAGAAAGCA CAAGGGGTCACGTGA AAT TCACGTAACCCCTTG ATTTTATTGGTGCCG TERM 2692 3351138 - 3351112 - R 100 -17.4 -3.64915 | opp_overlap 3351109 3351108, overlap 3351109 3351106 GCCCAGAAAGCACAA GGGGTCACGTGA AAT TCACGTAACCCC TTGATTTTATTGGTG Rpic_3202 3351751 - 3351254 - | Stringent starvation protein B Rpic_3203 3352433 - 3351822 - | Glutathione S-transferase domain TERM 2693 3352568 - 3352526 - R 100 -15.8 -4.5115 | gap 2 CACAAAAAGCGAAAA GGCAAAGGGCTAGAGCCAGT TCTCC ACCGGC-CTAGCCCTT-GCC CGGAAAACACGGATT Rpic_3204 3353327 - 3352584 - | cytochrome c1 TERM 2694 3352718 - 3352743 + g 76 -14.1 -3.07947 | gap 1, opp_overlap 3352714 3352717 3352716, overlap 3352739 TCCAGTCCAAATAGC TGACCAGGTCGG CCA CCG-CCTGGTCA TATTCGACCTTGTTC Rpic_3205 3354765 - 3353365 - | Cytochrome b/b6 domain TERM 2695 3354418 - 3354375 - G 75 -14.6 -2.66787 | gap 1 CGAAGATCCAGACCA GCTCGCGCGGCTTACGGTACG AGC CGTACAGCATGCCGCG-GAAC ATGTGCAGATACACG TERM 2696 3354494 - 3354445 - G 81 -11.4 -4.12254 | gap 1, overlap 3354432 3354446 CACGACGATAAAGAA CGCCGAAGCGCCGGTTGAGTGCA TATAG CGCAC-CAACCAGCCCCACGGCA CCTCGCGCATGATGA TERM 2697 3354493 - 3354446 - G 72 -12.7 -3.0663 | gap 1, overlap 3354432 3354445 ACGACGATAAAGAAC GCCGAAGCGCCGGTTGAGTGCA TATAG CGCAC-CAACCAGCCCCACGGC ACCTCGCGCATGATG Rpic_3206 3355376 - 3354768 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 2698 3355236 - 3355250 + g 100 -12.8 -4.63527 | CGCCTCTACGGGCGC GCCCGC TGC GCGGGC TTTTTCAGATGGTGC TERM 2699 3355301 - 3355282 - G 75 -9.2 -4.06903 | overlap 3355278 AATGTGCAAACGAAA GGGGCCGC AACT GCAACCCC TCCCACACCACCAGC TERM 2700 3355320 - 3355349 + g 70 -14.3 -2.61429 | overlap 3355319 CACACCACCAGCCAC GGACGTCGCAATC AATA GATTGCGGCGACC CTTGTCCACGTTTTG Rpic_3207 3355622 - 3356050 + | large conductance mechanosensitive channel protein Rpic_3208 3356809 - 3356063 - | protein of unknown function DUF34 Rpic_3209 3356829 - 3358043 + | protease Do TERM 2701 3358068 - 3358088 + T 100 -11.1 -5.24129 | opp_overlap 3358068 TTCGGAATATACAAA CGGCGGC CAGATGT GCCGCCG TTTTTTATGCGCGCA TERM 2702 3358088 - 3358068 - T 89 -11.1 -4.2074 | opp_overlap 3358068 TTCGGAATATACAAA CGGCGGC CAGATGT GCCGCCG TTTTTTATGCGCGCA TERM 2703 3358447 - 3358424 - T 100 -16 -5.38054 | opp_overlap 3358424 3358416 TCGCACAAAGAAAAA CGCCGACCCC TTTC GGGATCGGCG TTTAACCGTTTAATT TERM 2704 3358424 - 3358447 + T 88 -13.8 -3.65084 | opp_overlap 3358424, overlap 3358416 TCGCACAAAGAAAAA CGCCGACCCC TTTC GGGATCGGCG TTTAACCGTTTAATT Rpic_3210 3359595 - 3358489 - | porin Gram-negative type TERM 2705 3359717 - 3359739 + r 80 -11.2 -3.75024 | AAACCCTTTCTGGCT CTGGGCCGCG ATT TGCGGCCAAG TTGTTGCTCATGGGC Rpic_3211 3361072 - 3359930 - | extracellular solute-binding protein family 1 Rpic_3212 3361192 - 3361893 + | two component transcriptional regulator, winged helix family Rpic_3213 3361890 - 3363419 + | integral membrane sensor signal transduction histidine kinase Rpic_3214 3363542 - 3364648 + | extracellular solute-binding protein family 1 TERM 2706 3364700 - 3364725 + F 78 -13.3 -3.21099 | overlap 3364720 CATCTGACCGACCTG CCGGCGCCA TCCGTATC TGGCGCCGG TTCCTCCTGGAGGCA Rpic_3215 3364743 - 3366554 + | binding-protein-dependent transport systems inner membrane component TERM 2707 3367099 - 3367078 - g 71 -10.8 -3.61894 | opp_overlap 3367078 3367075 AAGCTGCGCGAAGAA GCCCGCGC CTTCCT GCGCGAGC TGATTGTGCGCCTGG Rpic_3216 3366547 - 3367632 + | ABC transporter related TERM 2708 3367687 - 3367672 - T 89 -10.4 -4.45068 | opp_overlap 3367672 ATCGGCAACAAGAAA GGCAGC CTCG GCTGCC TTTTCTTCTTTGGCT TERM 2709 3367672 - 3367687 + T 100 -10.4 -5.011 | opp_overlap 3367672 ATCGGCAACAAGAAA GGCAGC CTCG GCTGCC TTTTCTTCTTTGGCT Rpic_3217 3368523 - 3367720 - | Sec-independent protein translocase, TatC subunit Rpic_3218 3369097 - 3368585 - | twin-arginine translocation protein, TatB subunit Rpic_3219 3369376 - 3369119 - | twin-arginine translocation protein, TatA/E family subunit TERM 2710 3369396 - 3369436 + r 79 -8.9 -4.17089 | overlap 3369400 3369404 TACTCCCACGTAAAT ACGGCTGGTGGCGTCGCAA CGG TGGCGACGCCATTGGTTGA TTTTACGGATTTGCG TERM 2711 3369400 - 3369432 + r 82 -12.7 -3.68023 | overlap 3369396 3369404 CCCACGTAAATACGG CTGGTGGCGTCGCAA CGG TGGCGACGCCATTGG TTGATTTTACGGATT TERM 2712 3369404 - 3369428 + r 90 -14.3 -3.54177 | overlap 3369400 3369396 CGTAAATACGGCTGG TGGCGTCGCAA CGG TGGCGACGCCA TTGGTTGATTTTACG Rpic_3220 3369813 - 3369439 - | putative transmembrane protein Rpic_3221 3370219 - 3369845 - | phosphoribosyl-ATP diphosphatase TERM 2713 3369992 - 3370012 + g 71 -9.7 -3.72893 | opp_overlap 3369991 GGTGTGGAACCACAG GTCGGCTAC TTC GTAGACGAC TTTGCTGCGCGCCTC Rpic_3222 3370634 - 3370212 - | Phosphoribosyl-AMP cyclohydrolase TERM 2714 3370339 - 3370326 - G 71 -4.5 -4.58283 | gap 1 GAACTTCTGGAAAAA GCACGC GTG GCG-GC CAGTATGGCAGGCGA Rpic_3223 3371407 - 3370631 - | imidazoleglycerol phosphate synthase, cyclase subunit TERM 2715 3371415 - 3371432 + r 81 -14.1 -3.29511 | GCTAGCATGATGAGT CGGGCGC CGGA GCGCCCG TTGTGCACGGCTGGA Rpic_3224 3372198 - 3371455 - | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Rpic_3225 3372925 - 3372272 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Rpic_3226 3373557 - 3372934 - | multiple antibiotic resistance (MarC)-related protein TERM 2716 3373384 - 3373372 - G 72 -3.3 -4.6902 | TGAGAACCCGAAAAA GCTGA TGA TCTGC TCGCCCAGCAACGCC Rpic_3227 3374202 - 3373612 - | Imidazoleglycerol-phosphate dehydratase Rpic_3228 3375323 - 3374199 - | histidinol-phosphate aminotransferase Rpic_3229 3376668 - 3375340 - | Histidinol dehydrogenase TERM 2717 3375527 - 3375515 - G 78 -10.5 -3.96327 | AGCGGCGACGAGAAA CGCGC CGT GCGCG AGGTGGGCAGCACAT Rpic_3230 3377354 - 3376665 - | ATP phosphoribosyltransferase Rpic_3231 3378738 - 3377374 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2718 3378596 - 3378613 + g 74 -12.7 -3.19192 | CCAGACACGCGGATT TGGCCCG AGAG CGGGCCA TTGCCTTCGATCAGC Rpic_3232 3378980 - 3378738 - | BolA family protein Rpic_3233 3379822 - 3379034 - | ABC-2 type transporter TERM 2719 3379720 - 3379696 - G 71 -7.8 -4.11838 | gap 1 AAATCAGCAGATAAA GCAGCG-CGGT CAGC ACCGGCGCGGC CACGGTCTGGAAGCT Rpic_3234 3380784 - 3379819 - | ABC transporter related TERM 2720 3380023 - 3380057 + g 75 -12.1 -3.54424 | overlap 3380022 CAGGCGCAGACGGAC GCC-GCGCTCGCCGTGG TTG CC-CGGCAGGCGCAGGC TTTCCAGCGATGCCG TERM 2721 3380445 - 3380458 + g 74 -2.4 -4.72272 | TGGCCATGACCTCGT CGAT CCAGTC ATCG TTTTTCGTCAGGCCG Rpic_3235 3381345 - 3381034 - | putative signal peptide protein TERM 2722 3381396 - 3381375 - R 100 -12.3 -4.96501 | opp_overlap 3381375 3381373 CGTCAGAAAAAGAAA CAGCGGCCA GAAC TGACCGCTG TGTTGATTCTACCGG Rpic_3236 3382055 - 3381420 - | toluene tolerance family protein Rpic_3237 3383011 - 3382208 - | VacJ family lipoprotein Rpic_3238 3383535 - 3383008 - | Mammalian cell entry related domain protein Rpic_3239 3384340 - 3383573 - | protein of unknown function DUF140 Rpic_3240 3385170 - 3384337 - | ABC transporter related Rpic_3241 3386479 - 3385439 - | hypothetical protein TERM 2723 3386184 - 3386216 + g 71 -13.5 -3.01712 | gap 1, overlap 3386160 GCGCGGGCGACGGCC TCG-CCGGCGGCCA TGCCAT TGGCTGCCGGGCGA TCTTCGACGCCCACC TERM 2724 3386388 - 3386352 - G 74 -10.8 -3.72893 | gap 1 TACCCTTGCAGCAAA GCACGC-GCGGGCGACG CCAG CATCGCCGGCAGCACGC CAAGCCACGCAAGCG TERM 2725 3386646 - 3386625 - R 100 -14.4 -5.38054 | CGGCACAAACAAAAA GGCCCGCC GAGGCA GGCGGGCC TGAGTCAAACGGTCA Rpic_3242 3388134 - 3386671 - | glutamate synthase, NADH/NADPH, small subunit TERM 2726 3386837 - 3386860 + g 75 -10.2 -3.85698 | overlap 3386816 3386815 3386840 TCGCCTTCGGTGGCG GCACGCGCGT TGTT GCGCGCGTCC TTTGTCACGCCAAAG TERM 2727 3386991 - 3387040 + g 73 -11.9 -3.33696 | opp_overlap 3386991 CGTCCTTCCACTCAA GGCGCACGGCGGTGAGGCCCGTC ACGC GGCCGTTCTCGCCGATGAGCGCC TTGGTTGCGACCGAC Rpic_3243 3393074 - 3388275 - | Glutamate synthase (ferredoxin) TERM 2728 3389391 - 3389412 + g 71 -10.1 -3.61398 | GAAGTAGTTCACCAC GTGCTCGGG CTTG CCCGAGAAC TTCTTGCGCAGCACC TERM 2729 3392293 - 3392272 - G 79 -11.5 -3.85698 | GTGTTGGTCGAGAAA CGCTGGTGC ACCA GCGCCAGCG CCGACACCGTACGCG Rpic_3244 3393982 - 3393257 - | protein of unknown function DUF1568 TERM 2730 3394070 - 3394096 + H 100 -18 -3.65902 | opp_overlap 3394059 AAACGCTTGCATGCC CACTGCCGTCGC GAT GCGACGGCAGAG TTTGCGTGCCGTCAA Rpic_3245 3394232 - 3394906 + | OmpW family protein TERM 2731 3394967 - 3394995 + T 77 -14.6 -2.72379 | gap 1 GACGTGCCGCAGGGG CCGTCGACG-GCG GGGG CGCTCGTCGGCGG TGGTTGGCGCGTTCG TERM 2732 3395010 - 3395038 + T 100 -5.9 -5.75945 | gap 1, overlap 3395011 GTGGTTGGCGCGTTC GGCCCGGCATGC GTTGGG GCG-GCCGGGCA TTTTTTTTGGGCGCT TERM 2733 3395011 - 3395037 + T 76 -9.4 -4.04482 | gap 1, overlap 3395010 TGGTTGGCGCGTTCG GCCCGGCATGC GTTGGG GCG-GCCGGGC ATTTTTTTTGGGCGC Rpic_3246 3396292 - 3395126 - | deoxyguanosinetriphosphate triphosphohydrolase TERM 2734 3395753 - 3395736 - G 70 -4.7 -4.36914 | opp_overlap 3395738, overlap 3395738 TGCCCTTCGAGAAAA CGGCGGC CCAA GTCACCG AGCGTGGCCGCGTTG Rpic_3247 3397419 - 3396313 - | 3-dehydroquinate synthase Rpic_3248 3397955 - 3397416 - | Shikimate kinase TERM 2735 3398074 - 3398101 + r 90 -14.9 -3.60296 | gap 1, opp_overlap 3398074 GCAGGACACAAAAAA GCCCGGCGCTCC ATTCA GGAG-GCCGGGC TTTCCAATCGCGATA TERM 2736 3398101 - 3398074 - R 100 -14.9 -5.39721 | gap 1, opp_overlap 3398074 GCAGGACACAAAAAA GCCCGGCGCTCC ATTCA GGAG-GCCGGGC TTTCCAATCGCGATA Rpic_3249 3400292 - 3398127 - | type IV pilus secretin PilQ Rpic_3250 3400834 - 3400289 - | Pilus assembly protein PilP Rpic_3251 3401490 - 3400831 - | Pilus assembly protein PilO TERM 2737 3401518 - 3401544 + r 78 -13.6 -3.17075 | GCCGTGGCCGCACCC GGCTTGGCCGGC GCT GCCGGCTCGGCC TTCCATTGGAAGCGG Rpic_3252 3402125 - 3401493 - | Fimbrial assembly family protein Rpic_3253 3403221 - 3402136 - | type IV pilus assembly protein PilM Rpic_3254 3403740 - 3406073 + | penicillin-binding protein, 1A family TERM 2738 3406088 - 3406115 + T 100 -9.9 -4.91109 | opp_overlap 3406093, overlap 3406093 AACGTCGCGCCCACG AAAAAGCCGCC CTTCGA GGCGGCTTTTC TTTTTGTCATGCGAC TERM 2739 3406093 - 3406110 + T 100 -9.8 -5.3658 | opp_overlap 3406093, overlap 3406088 CGCGCCCACGAAAAA GCCGCC CTTCGA GGCGGC TTTTCTTTTTGTCAT TERM 2740 3406110 - 3406093 - T 89 -10.5 -4.72272 | opp_overlap 3406088 3406093 CGCGCCCACGAAAAA GCCGCCC TTCG AGGCGGC TTTTCTTTTTGTCAT Rpic_3255 3406488 - 3406144 - | iron donor protein CyaY Rpic_3256 3406626 - 3406859 + | putative proline-rich transmembrane protein Rpic_3257 3406911 - 3408182 + | diaminopimelate decarboxylase TERM 2741 3408203 - 3408222 + T 100 -10.7 -5.40072 | opp_overlap 3408203 CATCGCAAAGAAAAA GCCGACG CGCCAA CGTCGGC TTTTTTTGGGCGCGA TERM 2742 3408222 - 3408203 - T 100 -11.4 -5.28942 | opp_overlap 3408203 CATCGCAAAGAAAAA GCCGACGC GCCA ACGTCGGC TTTTTTTGGGCGCGA Rpic_3258 3408900 - 3408244 - | Ferric reductase domain protein transmembrane component domain Rpic_3259 3409903 - 3408908 - | oxidoreductase molybdopterin binding Rpic_3260 3410860 - 3410000 - | putative transmembrane anti-sigma factor Rpic_3261 3411441 - 3410869 - | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 2743 3410968 - 3410920 - G 78 -13.3 -3.55444 | gap 3, overlap 3410924 GCCGGATGCCGCAAA TGCAGCCGATGCG-GCTGGCGCCC CGTC GAGCGCC-GCGCGCATCCGCT-CA CGCGCCCGCGACAGC TERM 2744 3410965 - 3410924 - G 74 -15.2 -2.64472 | overlap 3410920 GATGCCGCAAATGCA GCCGATGCG-GCTGGCGCCC CGTC GAGCGCC-GCGCGCATCCGC TCACGCGCCCGCGAC Rpic_3262 3411895 - 3411467 - | Secreted repeat of unknown function Rpic_3263 3413189 - 3412002 - | cytochrome c-type biogenesis protein CcsB Rpic_3264 3415401 - 3413197 - | ResB family protein TERM 2745 3413351 - 3413363 + g 75 -10.5 -3.90112 | GCGGTCAGCACATGT GCGCC GGA GGCGC TTTCGTTGGCCGGAC TERM 2746 3415435 - 3415414 - R 75 -2.3 -5.0133 | opp_overlap 3415432, overlap 3415432 CATGCGGGGAAAAAA CCTGTTC AAAAACGA AAACAGG GTGGCGATGCCAGGC TERM 2747 3415432 - 3415464 + r 100 -20 -4.12474 | opp_overlap 3415414 3415432 GTTCAAAAACGAAAA CAGGGTGGCGATGC CAGGC GCATTGCCACCCTG TTCTTCTTGTTGATT TERM 2748 3415464 - 3415432 - R 100 -17.8 -4.77757 | opp_overlap 3415432, overlap 3415414 GTTCAAAAACGAAAA CAGGGTGGCGATGC CAGGC GCATTGCCACCCTG TTCTTCTTGTTGATT Rpic_3265 3416173 - 3415514 - | cytochrome c class I TERM 2749 3416075 - 3416089 + g 83 -5.6 -4.87626 | overlap 3416061 3416085 TTCGCCGCGCGCGGC GTCGGC CTT GGCGAC TTTTTGCTCTTCGGC TERM 2750 3416309 - 3416281 - H 89 -11.6 -4.2717 | overlap 3416282 ACCAGCGCATGAAAA CGGACCGGCCCG GGCCT CGGGGCGGTCCT GCGACGGATCTGGTG TERM 2751 3416308 - 3416282 - H 82 -15.1 -3.1582 | overlap 3416281 CCAGCGCATGAAAAC GGACCGGCCCG GGCCT CGGGGCGGTCC TGCGACGGATCTGGT TERM 2752 3417127 - 3417103 - g 100 -10.7 -5.75945 | overlap 3417116 3417117 AGCCGGCAAAAAAAA CCCCGTCGC CAAACGC GCAACGGGG GTAACGACCCCATCG Rpic_3266 3416430 - 3417131 + | GTP-binding protein HSR1-related Rpic_3267 3417282 - 3418277 + | Porphobilinogen synthase TERM 2753 3418297 - 3418327 + T 100 -16.9 -3.53563 | GCCGTCGGCTTGGCT GCCTGCGTCGTGC CGATC GTGCGACGCAGGC TTTCCAGAAACGTGT Rpic_3268 3420095 - 3418278 - | Protein-disulfide reductase Rpic_3269 3420452 - 3420114 - | CutA1 divalent ion tolerance protein TERM 2754 3420507 - 3420525 + r 74 -11 -3.47322 | opp_overlap 3420500 3420507 GCAGGCAACAAAAAA GCCAGGGT ACG ATCCTGGC TTCATTGTAATGCGC TERM 2755 3420525 - 3420507 - R 100 -8.8 -5.4833 | opp_overlap 3420507, overlap 3420500 GCAGGCAACAAAAAA GCCAGGGT ACG ATCCTGGC TTCATTGTAATGCGC Rpic_3270 3421006 - 3420608 - | ribosomal protein L17 TERM 2756 3421150 - 3421125 - R 95 -14.7 -4.08767 | overlap 3421126 GCGATGGCGGGAAAA CCGGCCGATGC TCGC GCACCGGCCGA CAATTGCAACTTACT TERM 2757 3421149 - 3421126 - R 83 -16 -3.05046 | overlap 3421125 CGATGGCGGGAAAAC CGGCCGATGC TCGC GCACCGGCCG ACAATTGCAACTTAC Rpic_3271 3422141 - 3421161 - | DNA-directed RNA polymerase, alpha subunit TERM 2758 3422373 - 3422353 - R 77 -14.7 -2.71061 | opp_overlap 3422350, overlap 3422348 3422345 CAAAAAGGCACACGA GCCCGCACC TGC GGTACGGGC GTCGTCATTAACGCG Rpic_3272 3423004 - 3422381 - | ribosomal protein S4 TERM 2759 3423142 - 3423114 - R 95 -15.3 -4.09285 | overlap 3423107 TATGAAAAGACGAAA CCCGCCTTCCGGA AAA CCCGGAAGACAGG CAGGCGGGCAAGTAT Rpic_3273 3423609 - 3423208 - | ribosomal protein S11 TERM 2760 3423584 - 3423600 + g 71 -7.9 -4.17023 | overlap 3423573 3423570 TTGCGCGCGCGCTGG GCGGCGG TAT TCGCTGC TTTTGCCATAGTTCC Rpic_3274 3423999 - 3423634 - | ribosomal protein S13 Rpic_3275 3424137 - 3424021 - | ribosomal protein L36 Rpic_3276 3424386 - 3424168 - | translation initiation factor IF-1 Rpic_3277 3425735 - 3424413 - | preprotein translocase, SecY subunit Rpic_3278 3426224 - 3425793 - | ribosomal protein L15 TERM 2761 3426186 - 3426210 + g 86 -14.3 -3.73783 | GCGGCGCTTGGCGTG CTTGGAGCCGG CTG CCGGCTTCAGG TTATTCAGTTGCATG Rpic_3279 3426425 - 3426243 - | ribosomal protein L30 Rpic_3280 3426966 - 3426448 - | ribosomal protein S5 Rpic_3281 3427344 - 3426988 - | ribosomal protein L18 Rpic_3282 3427889 - 3427356 - | ribosomal protein L6 Rpic_3283 3428297 - 3427902 - | ribosomal protein S8 Rpic_3284 3428630 - 3428325 - | ribosomal protein S14 Rpic_3285 3429182 - 3428640 - | ribosomal protein L5 Rpic_3286 3429517 - 3429209 - | ribosomal protein L24 Rpic_3287 3429897 - 3429529 - | ribosomal protein L14 TERM 2762 3430136 - 3430108 - R 82 -11.1 -3.89215 | CCTCACAAAGGGAAA GACCGAGACTATA TCA CATAATCTCGGCC GTGCAACAGCAAACT Rpic_3288 3430435 - 3430166 - | ribosomal protein S17 Rpic_3289 3430626 - 3430432 - | ribosomal protein L29 Rpic_3290 3431055 - 3430639 - | ribosomal protein L16 Rpic_3291 3431846 - 3431058 - | ribosomal protein S3 Rpic_3292 3432185 - 3431856 - | ribosomal protein L22 Rpic_3293 3432470 - 3432195 - | ribosomal protein S19 Rpic_3294 3433322 - 3432492 - | ribosomal protein L2 Rpic_3295 3433639 - 3433325 - | Ribosomal protein L25/L23 Rpic_3296 3434256 - 3433636 - | ribosomal protein L4/L1e TERM 2763 3433957 - 3433969 + g 79 -6.3 -4.63932 | overlap 3433947 CATCTTCTTGTTGAC CTTCT GCG AGAAG TTTTCTTCCGGGCTG TERM 2764 3434061 - 3434071 + g 74 -2.4 -4.79223 | overlap 3434066 3434068 GGCCCGTACCCTTTT GACG CCA CGGC TTTTTGGTCGTGTGC Rpic_3297 3434921 - 3434268 - | ribosomal protein L3 TERM 2765 3435172 - 3435141 - R 95 -15.3 -4.09864 | gap 1, opp_overlap 3435147, overlap 3435147 ATTCAGCGCTCAAAA GCAAAACGGCGAGC ACTTA GCTCGCCGTTT-GC CCGTTACCGGAAGGG TERM 2766 3435167 - 3435147 - R 100 -14 -4.67038 | opp_overlap 3435147, overlap 3435141 CGCTCAAAAGCAAAA CGGCGAGC ACTTA GCTCGCCG TTTGCCCGTTACCGG TERM 2767 3435147 - 3435167 + r 88 -14 -3.60792 | opp_overlap 3435147 3435141 CGCTCAAAAGCAAAA CGGCGAGC ACTTA GCTCGCCG TTTGCCCGTTACCGG TERM 2768 3435174 - 3435197 + r 91 -13.2 -3.79841 | AGCTCGCCGTTTGCC CGTTACCGGA AGGG TCCGGTAGCG TTGTCTTGCTTATTG Rpic_3298 3435518 - 3435207 - | ribosomal protein S10 Rpic_3299 3436834 - 3435626 - | translation elongation factor Tu Rpic_3300 3439088 - 3436917 - | translation elongation factor G TERM 2769 3437258 - 3437268 + g 70 -4.6 -4.42238 | CCATCGAGCCGGCCA TGCG GAA CGCG TTTTCGTTCGAGTCC TERM 2770 3437480 - 3437443 - G 72 -8.3 -3.95022 | opp_overlap 3437450 3437470 3437479, overlap 3437444 3437446 TCGACGAACACGAAA CCATTGACCGCAGCAGC AGCT GCTGCTGCCGTCGTTGC CGCCGCCTTCGCTGC TERM 2771 3439178 - 3439149 - R 100 -14.3 -4.1891 | CGCCCCTAATACAAA TGGGCGAGATGTG CGCA CACAGCCCGCCCA GCAACCAACAACGTC Rpic_3301 3439673 - 3439203 - | ribosomal protein S7 Rpic_3302 3440237 - 3439860 - | ribosomal protein S12 Rpic_3303 3441794 - 3440535 - | major facilitator superfamily MFS_1 TERM 2772 3440727 - 3440703 - G 70 -7.8 -4.0031 | overlap 3440706 AGCCGCACCAAAGAA GAACGCCCCG GTGTA CAGGCCGTTC ACGCGCCCCCGGACC Rpic_3304 3441894 - 3442814 + | transcriptional regulator, LysR family Rpic_3305 3444724 - 3442811 - | ATP-dependent DNA helicase RecQ TERM 2773 3444019 - 3443999 - G 84 -14.7 -3.33696 | opp_overlap 3443999 3443992 3443985 CTCGGCGCGAATGAA GCGCAGCAG CTG CTGCCGCGC GCTGTCCTTCTCGAC TERM 2774 3444588 - 3444573 - G 71 -10.4 -3.56541 | opp_overlap 3444573 3444580, overlap 3444574 ATCAGCACGAGACAA TCGCCG CCGT CGGCGA CGTGCGCGACGATTT Rpic_3306 3445427 - 3444837 - | Methyltransferase type 12 TERM 2775 3445214 - 3445160 - G 81 -9.3 -4.21275 | overlap 3445149 3445161 3445178 3445188 CCAATTCAGGCAAAA GCGCCTGCCGGAA-CGACAGGCCAGGA TAC TGCTCGCGCGCCGCTTCCAGCAG-CGC GGCCGACGCGTCGTA TERM 2776 3445275 - 3445310 + g 70 -13.8 -2.53876 | CCACGCCACCTCGCG GCCCGCGCCGCAGCCG ATGT CGGCGGTGGCGCCGCC TGCCTTGAACTCACG Rpic_3307 3446277 - 3445435 - | putative signal peptide protein TERM 2777 3445970 - 3446002 + g 77 -12.5 -3.5782 | overlap 3445971 3445972 ATCAGCGTGCCCACC GACGAGCCGTCGGCG CCA CGGCGGCGGCGCGGC TTGCTTTCGTCCATT Rpic_3308 3447091 - 3446288 - | putative signal peptide protein Rpic_3309 3448809 - 3447088 - | putative signal peptide protein Rpic_3310 3453601 - 3448817 - | alpha-2-macroglobulin domain protein TERM 2778 3452914 - 3452892 - G 81 -11.2 -3.95153 | overlap 3452872 TCAACGATGTACAAA CCGGCGGGCA GCT TGCCAACCGG GATCATCACGTTGCC Rpic_3311 3454314 - 3453610 - | protein of unknown function DUF1175 Rpic_3312 3456161 - 3454311 - | hypothetical protein TERM 2779 3454870 - 3454908 + g 84 -12.2 -3.96148 | overlap 3454871 CCGTAGCGCGCGCTG ACCGGGCGCTGCCACAGC GTG GCGTTGGCGGGGCCCGGC TTTGTCGTCACCGGC TERM 2780 3454871 - 3454907 + g 81 -15.7 -2.97475 | overlap 3454870 CGTAGCGCGCGCTGA CCGGGCGCTGCCACAGC GTG GCGTTGGCGGGGCCCGG CTTTGTCGTCACCGG TERM 2781 3456396 - 3456378 - R 100 -13.1 -5.94713 | opp_overlap 3456378 AGCGGACAAAAAAAA GCCCGGC ACATG GCCGGGC TTTGATGGTGTTGCT TERM 2782 3456378 - 3456396 + r 85 -13.1 -3.8505 | opp_overlap 3456378 AGCGGACAAAAAAAA GCCCGGC ACATG GCCGGGC TTTGATGGTGTTGCT Rpic_3313 3460650 - 3456421 - | DNA-directed RNA polymerase, beta' subunit TERM 2783 3456449 - 3456471 + g 72 -8.4 -3.94877 | TCTTGCTGAACGGCA GGCGTTTCGA AGA TCGAAGCGGC TTCTTCTTCGGCAAT TERM 2784 3460042 - 3460060 + g 70 -11 -3.39803 | overlap 3460037 GGCCTGCAGCTCGGC GCGGATCG TCT CGATCTGC TTCTCGATGTCGATG Rpic_3314 3464884 - 3460778 - | DNA-directed RNA polymerase, beta subunit TERM 2785 3461687 - 3461723 + g 74 -10 -3.70081 | overlap 3461716 CACCTTGACCATCTT GATCACGCCCGGCGGC AGTTC GTCGCCTTGCGTGAGC TTCTTGCGCTTCTCT TERM 2786 3463421 - 3463441 + g 70 -11.1 -3.33696 | CGGCATCAGGTTTTC CGTCTCGGC CTG GCCCAGACG TTCCTTCACGGCGCG TERM 2787 3465296 - 3465265 - R 89 -10 -4.6902 | opp_overlap 3465275 CCACAAGCGCAAAAA GGCTGGCGCCGGGA AATC TCCCTTTGCCAGCC TCCATCGCGTACCAG Rpic_3315 3465708 - 3465334 - | ribosomal protein L7/L12 Rpic_3316 3466278 - 3465772 - | ribosomal protein L10 TERM 2788 3466314 - 3466294 - R 71 -6.7 -4.14392 | overlap 3466297 GGTTAAGCTCCAAAA CGACGTCGG CTT CCGCAGTCG CTGCGGTCACCTCGG Rpic_3317 3467349 - 3466654 - | ribosomal protein L1 Rpic_3318 3467783 - 3467352 - | ribosomal protein L11 Rpic_3319 3468544 - 3467960 - | NusG antitermination factor TERM 2789 3468430 - 3468444 + g 91 -7 -5.08824 | CGATGCGCTCCTGCA GCGCGC GTT GCACGC TTTTTTCCATGCCCG Rpic_3320 3468937 - 3468557 - | preprotein translocase, SecE subunit TERM 2790 3468865 - 3468846 - G 79 -4.2 -4.90266 | GCCAGCAAGTAAAAA CCGATCAC CCCA GCGACCAG CAGCAGGAACGCCAA TERM 2791 3468954 - 3468991 + r 72 -13.4 -2.52464 | opp_overlap 3468948 3468957, overlap 3468958 3468959 TTTCCCAAACGAGAC TAAGCCGCGTGGCGCG TTTTCC TGCGCGACGCGGCTGA TGAATTGGCAGGGGC TERM 2792 3468988 - 3468957 - R 86 -14.4 -3.35344 | opp_overlap 3468954 3468958 3468959, overlap 3468948 CCCAAACGAGACTAA GCCGCGTGGCGC GTTTTCCT GCGCGACGCGGC TGATGAATTGGCAGG TERM 2793 3468959 - 3468969 + r 75 -8.2 -4.25104 | opp_overlap 3468948 3468957, overlap 3468958 3468954 CAAACGAGACTAAGC CGCG TGG CGCG TTTTCCTGCGCGACG Rpic_3321 3470352 - 3469162 - | translation elongation factor Tu Rpic_3322 3472676 - 3471147 - | transposase IS66 Rpic_3323 3473029 - 3472739 - | IS66 Orf2 family protein Rpic_3324 3473358 - 3473071 - | hypothetical protein TERM 2794 3473646 - 3473610 - R 100 -19.6 -4.59773 | opp_overlap 3473616, overlap 3473614 GTGGAGGTGTAAAAA CAAACACCCCAGCTCT GTGTA AGAGCTGGGGTGTTGG AGGGGAGAGCCTGGC TERM 2795 3473642 - 3473614 - R 100 -19 -4.86385 | opp_overlap 3473616, overlap 3473610 AGGTGTAAAAACAAA CACCCCAGCTCT GTGTA AGAGCTGGGGTG TTGGAGGGGAGAGCC TERM 2796 3473616 - 3473640 + r 83 -15.8 -3.01712 | opp_overlap 3473614 3473610 GTGTAAAAACAAACA CCCCAGCTCT GTGTA AGAGCTGGGG TGTTGGAGGGGAGAG TERM 2797 3476270 - 3476281 + r 71 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC Rpic_3325 3480174 - 3479314 - | CHAD domain containing protein TERM 2798 3479728 - 3479716 - G 71 -9.1 -3.72576 | GCCGTCCGCATGAAA GGCAG CGA CTGCC TGCTCCAGTTCGAAC Rpic_3326 3481057 - 3480284 - | transcriptional regulator, DeoR family TERM 2799 3481508 - 3481534 + G 71 -12.2 -3.22777 | overlap 3481506 ACGATGCCGCGCAAC GTCCGGCGTGGA TGA TCCGCGCTGGCC TCTTCCTCTATGACC Rpic_3327 3481201 - 3482778 + | FAD dependent oxidoreductase Rpic_3328 3482845 - 3483963 + | ABC transporter related Rpic_3329 3483950 - 3485047 + | ABC transporter related Rpic_3330 3485044 - 3485934 + | binding-protein-dependent transport systems inner membrane component Rpic_3331 3485927 - 3486760 + | binding-protein-dependent transport systems inner membrane component Rpic_3332 3486783 - 3487064 + | putative transmembrane protein Rpic_3333 3487236 - 3488972 + | conserved hypothetical signal peptide protein Rpic_3334 3489086 - 3490582 + | glycerol kinase TERM 2800 3490645 - 3490590 - T 93 -14.3 -3.76952 | gap 2, opp_overlap 3490608, overlap 3490591 3490608 GCCACTGAAGGCAAA CCCGGC-AACCA-GAAAAAAGGCGACC CTCG GATCGCCTTTTTTCATGGTTCGGCCGG CGGCTTACTTGCCTT TERM 2801 3490645 - 3490591 - T 85 -17.6 -2.8585 | gap 3, opp_overlap 3490608, overlap 3490590 3490608 CCACTGAAGGCAAAC CCGG-C-AACCA-GAAAAAAGGCGACC CTCG GATCGCCTTTTTTCATGGTTCGGCCGG CGGCTTACTTGCCTT TERM 2802 3490625 - 3490608 - T 100 -9.1 -5.37345 | opp_overlap 3490608, overlap 3490590 3490591 GGCAACCAGAAAAAA GGCGACC CTCG GATCGCC TTTTTTCATGGTTCG TERM 2803 3490608 - 3490625 + T 100 -7.7 -5.2189 | gap 1, opp_overlap 3490590 3490591 3490608 GGCAACCAGAAAAAA GGCGA-CC CTC GGATCGCC TTTTTTCATGGTTCG Rpic_3335 3491015 - 3490650 - | conserved hypothetical signal peptide protein Rpic_3336 3491206 - 3491832 + | protein of unknown function DUF1415 TERM 2804 3491872 - 3491846 - T 91 -13.7 -3.80516 | AACCAACTGACCAAA GGCAGCGACGG TTTGG CCGTCCCTGCC CTAGATGGCGCCTTG Rpic_3337 3493799 - 3492117 - | periplasmic glucan biosynthesis protein MdoG Rpic_3338 3494006 - 3495247 + | N-acylglucosamine 2-epimerase Rpic_3339 3495244 - 3496557 + | metabolite/H+ symporter, major facilitator superfamily (MFS) TERM 2805 3496579 - 3496610 + T 78 -7.2 -4.67641 | opp_overlap 3496579 TTTGGGATGAAGGAA CGCCTCTTGGAGGG GAAT CTCTCTGAGGGTCG TTTTGATTTTCGGCT TERM 2806 3496749 - 3496727 - T 78 -4.8 -4.78981 | gap 1 AGTAAGCAAAAGAAA GGCG-CGCC CGAGAT GGCGACACC CCCTTGAATTTGTGT TERM 2807 3496898 - 3496875 - T 100 -13.2 -4.45771 | gap 1, opp_overlap 3496875 3496896 ACGTCAAAAGAGAAA GGCCAACC-CG TCG CGCGGTTGGCC TTGTCGTTTGGGCTG TERM 2808 3496875 - 3496898 + T 88 -13.2 -3.60865 | gap 1, opp_overlap 3496875, overlap 3496896 ACGTCAAAAGAGAAA GGCCAACC-CG TCG CGCGGTTGGCC TTGTCGTTTGGGCTG TERM 2809 3496896 - 3496931 + T 84 -6 -4.90471 | opp_overlap 3496875, overlap 3496875 3496915 CCCGTCGCGCGGTTG GCCTTGTCGTTTGGGC TGGC GCCCAGAGGGTGTGGC TTTTGTCTTTTGACT TERM 2810 3497033 - 3496994 - T 80 -3.7 -5.10461 | gap 2 TGCAGGGAAGAAAAA GGAAGGG-AAA-CTGTCTG AGCG CAGCGAGTTTTTCCCTTCC CCTCCCTGCGACAGA Rpic_3340 3498418 - 3497234 - | Extracellular ligand-binding receptor TERM 2811 3498434 - 3498459 + H 100 -7.5 -6.22802 | gap 1 TGTTCGCACCCATGT CGCCGCGTGCCT CCT GGGCAA-CGGCG TTTTTTTTTGTCGAG Rpic_3341 3498612 - 3499409 + | transcriptional regulator, AraC family Rpic_3343 3500722 - 3499802 - | alpha/beta hydrolase-like protein Rpic_3344 3500886 - 3501779 + | transcriptional regulator, XRE family TERM 2812 3501843 - 3501860 + F 70 -9.8 -3.54029 | GATTTGCCTCCCTCC GGCGGC CCTTGC GCCGCC TTGTGCTTCATGACC TERM 2813 3502249 - 3502229 - g 72 -8.9 -4.07885 | CACGCGCGTGGAAAA GGCCAAGCC GGT GGCCTGGGC CGAGCGCCCGGCCAA Rpic_3345 3501870 - 3502646 + | PepSY-associated TM helix domain protein TERM 2814 3502666 - 3502684 + T 100 -11.7 -5.47399 | CGCATGTGTTGTGGA TGGCGCC CGCGT GGCGCCA TTTTTTTCCCCTTCG Rpic_3346 3503581 - 3502718 - | transcriptional regulator, RpiR family TERM 2815 3503214 - 3503172 - G 74 -12.7 -3.25823 | gap 2 CCGGCCGCATAGCAA TCGACGCGGCGCGCGCGGGCA ATG CGCTCG-GCG-GCGGCGTCGA CCTGCGTGGTGGACA TERM 2816 3503550 - 3503498 - G 74 -12.7 -3.21099 | gap 3, overlap 3503527 CGCGTCCAGGATCAA CCGCGCCACGCCCTGCTGCGCCGGCG AAAG CGC-GG-GCAGCTGGGCGC-GCAAGG CGTTGAGCAGGGGAA Rpic_3347 3503870 - 3504916 + | porin Gram-negative type TERM 2817 3505174 - 3505145 - T 70 -3.3 -4.68511 | overlap 3505149 GGCAAGACAAAGAAA GTGAGTCGGCCCC GGCA GGGGACGATACGC GGGATGGACCAGCAA Rpic_3348 3507470 - 3505197 - | MscS Mechanosensitive ion channel TERM 2818 3506620 - 3506593 - G 73 -14.8 -2.52516 | overlap 3506592 CCGCCCAGCACCAAC GCGACGCGCGGG TCCA CCAGCGCATCGC CGCAGGCGCCCAGAC Rpic_3349 3508826 - 3507537 - | major facilitator superfamily MFS_1 TERM 2819 3507825 - 3507798 - G 73 -5.5 -4.43669 | ACCGAAAAAACCAAA GGTGAGCAGCG CGATGC CGCCAATCACC AGCAGCAGCGGCCCC Rpic_3350 3508946 - 3509662 + | Glutathione S-transferase domain TERM 2820 3509684 - 3509668 - T 89 -10.8 -4.62168 | ACTGAAATGACAAAA CCCGGC GCAAG GCCGGG TTCGCATGGAGGTTG Rpic_3351 3510095 - 3509706 - | hypothetical protein TERM 2821 3510077 - 3510059 - G 71 -3.9 -4.57569 | gap 1, opp_overlap 3510072 3510074, overlap 3510060 3510061 GCACGCGGTCAAAAA TGTCCTCG ATGG CGAGGA-A CGTCCCCTTCCCTTT Rpic_3352 3510559 - 3510137 - | hypothetical protein Rpic_3353 3511123 - 3510896 - | hypothetical protein TERM 2822 3510963 - 3510936 - G 77 -4.8 -4.65895 | gap 1 TGGCCGAGGCAAAAA CCACGT-CGGTCA TGG TGCCCGCAGGTGG GCATCACCTCGTAGC Rpic_3354 3511376 - 3511167 - | hypothetical protein TERM 2823 3512734 - 3512750 + G 71 -9.4 -3.72893 | CGCGTGCAATGGCGC CCGGTG GGCAG CACCGG TTTGCTGCGCACGTC TERM 2824 3512849 - 3512800 - g 82 -7.1 -4.65895 | gap 1, opp_overlap 3512802, overlap 3512802 TCGCTGACGGAAAAA GGGTTGGAGCAGCTGCATTTCGAC CCC GCCAAGACGCAGCCGG-CCAACGC GGTCGATCAATGCCG Rpic_3355 3511654 - 3512868 + | hypothetical protein Rpic_3356 3514032 - 3512884 - | cation diffusion facilitator family transporter Rpic_3357 3514275 - 3514943 + | two component transcriptional regulator, LuxR family TERM 2825 3516617 - 3516594 - g 81 -11 -4.07568 | overlap 3516575 3516597 GTTGCGCCGTGAAAA TCATCAGCGC CGCC GCGCTGAAGA AACCCTGGCCCAACA TERM 2826 3517772 - 3517726 - g 78 -4.3 -4.8048 | opp_overlap 3517750, overlap 3517727 CGCGCACACGAAAAA TCGCTGGCGGTGCATGT-GACTG TGG CTGCCGACGTGC-CGGCCAGCGT CTCGGTCGACAGCAT TERM 2827 3518229 - 3518243 + G 71 -12.8 -2.93723 | overlap 3518225 GCAGCTGGCGGTCGC GGCCGG GCT CCGGCC TGTGGTTGCTGCAGA Rpic_3358 3514948 - 3519258 + | multi-sensor hybrid histidine kinase TERM 2828 3519275 - 3519290 + F 84 -10.4 -4.27584 | opp_overlap 3519266 GGAAAACCGTTTCAA GCGGTG CATG CACCGC TTTTAGATTAACCGT TERM 2829 3519616 - 3519652 + G 73 -5.8 -4.4078 | overlap 3519620 3519622 3519625 CGACAACCATTACCC CGGCTGCGCGTGCGAT GTGCA ATCGCACCTGTATTCG TTTTCGTTCGCGCCC TERM 2830 3520588 - 3520602 + G 70 -5.6 -4.27441 | overlap 3520589 CCTGGGCACCACCGT GTCGGG CTT CCCGAA TTTCTTCATGGTGGT Rpic_3359 3519380 - 3521026 + | Cyclohexanone monooxygenase Rpic_3360 3521055 - 3521945 + | short-chain dehydrogenase/reductase SDR Rpic_3361 3521955 - 3522977 + | alpha/beta hydrolase fold TERM 2831 3523834 - 3523790 - g 78 -13.6 -3.27704 | gap 2, overlap 3523785 3523807 ATCTCGGAAATCGAA GCGTATGCGGCAGCGAACGGCG AAG CGCCG-TCGCCGTCG-ATCCGC CGCAAGCTGTCGACG Rpic_3362 3522974 - 3523870 + | FF domain protein Rpic_3363 3524780 - 3523962 - | transcriptional regulator, MerR family Rpic_3364 3524867 - 3526024 + | hypothetical protein TERM 2832 3526584 - 3526614 + G 75 -9.6 -4.0162 | GCTGCCGTTCGGCAT GCGCGGCACCTTGG CGC TCAAGGAATCGCGC TTTCTCGTCTACACG Rpic_3365 3526021 - 3527094 + | protein of unknown function DUF811 Rpic_3366 3527526 - 3527113 - | conserved hypothetical signal peptide protein TERM 2833 3527664 - 3527680 + r 77 -11.5 -3.62597 | opp_overlap 3527664 AGGCAACAAAAAAAA GCCCGCT CGG GGCGGGC TTCTTCGGGAATGCA TERM 2834 3527680 - 3527664 - R 100 -10.8 -6.11243 | opp_overlap 3527664 AGGCAACAAAAAAAA GCCCGC TCGGG GCGGGC TTCTTCGGGAATGCA Rpic_3367 3528597 - 3527704 - | cytochrome c class I TERM 2835 3527975 - 3528022 + g 71 -14.1 -2.78463 | GCGGCGGCTGCAGCC GGC-GCGACCGGTGCTGCTGCCG GTGC CGGC-GCAGCAGCGGCCGGAGCC TGTGCTGCCGCCGGT TERM 2836 3528331 - 3528286 - G 74 -11.7 -3.57144 | gap 1, opp_overlap 3528287 3528288, overlap 3528287 TGCCGCATCGCCAAA TTTCGGCGCG-CCGGCCACGCC TGC AGCGTGGCAGGTCGCGCAGACT TCCTTGTAGAGCTGC TERM 2837 3528330 - 3528287 - G 75 -15.2 -2.74144 | gap 1, opp_overlap 3528287 3528288, overlap 3528286 GCCGCATCGCCAAAT TTCGGCGCG-CCGGCCACGCC TGC AGCGTGGCAGGTCGCGCAGAC TTCCTTGTAGAGCTG TERM 2838 3528287 - 3528330 + g 86 -14.5 -3.44622 | gap 1, opp_overlap 3528287 3528286, overlap 3528288 GCCGCATCGCCAAAT TTCGGCGCG-CCGGCCACGC CTGCA GCGTGGCAGGTCGCGCAGAC TTCCTTGTAGAGCTG TERM 2839 3528288 - 3528329 + g 87 -18 -2.66452 | gap 1, opp_overlap 3528287 3528286, overlap 3528287 CCGCATCGCCAAATT TCGGCGCG-CCGGCCACGC CTGCA GCGTGGCAGGTCGCGCAGA CTTCCTTGTAGAGCT Rpic_3368 3529227 - 3530294 + | histidinol-phosphate aminotransferase Rpic_3369 3530630 - 3530941 + | High potential iron-sulfur protein TERM 2840 3530969 - 3530986 + F 100 -12.7 -5.93809 | opp_overlap 3530967 3530969 CGCATGCAAGCAAGA CGGACCC TGCG GGGTCCG TTTTTTTTATGGGCG TERM 2841 3530986 - 3530969 - f 74 -12.7 -3.25652 | opp_overlap 3530969, overlap 3530967 CGCATGCAAGCAAGA CGGACCC TGCG GGGTCCG TTTTTTTTATGGGCG Rpic_3370 3531011 - 3531715 + | two component transcriptional regulator, winged helix family Rpic_3371 3532720 - 3531722 - | hypothetical protein TERM 2842 3532465 - 3532496 + g 79 -10 -4.07568 | ACTTGGCCACGGCAT CCATGCCGATGCTG CCGC CGGCACCGGCGCGG TTTTCCACCACCACC TERM 2843 3532851 - 3532802 - R 100 -12.1 -5.19879 | opp_overlap 3532819, overlap 3532814 GGCGAAATACAAAAA CGGCAGGCAAAAGAAAAGGCGCC CGAA GGCGCCTTTTCCGTTCCCAATCG AGTGACAGCGTCGAT TERM 2844 3532839 - 3532814 - R 100 -17.7 -4.20106 | opp_overlap 3532819, overlap 3532802 AAACGGCAGGCAAAA GAAAAGGCGCC CGAA GGCGCCTTTTC CGTTCCCAATCGAGT TERM 2845 3532819 - 3532834 + r 89 -11.8 -4.27584 | opp_overlap 3532814 3532802 GCAGGCAAAAGAAAA GGCGCC CGAA GGCGCC TTTTCCGTTCCCAAT Rpic_3372 3533996 - 3532866 - | porin Gram-negative type Rpic_3373 3534495 - 3534779 + | putative signal peptide protein TERM 2846 3534885 - 3534911 + T 100 -19.4 -4.7254 | TCTTGGCCCACTCTG GCCCCGCTGGTG ATG CGCCGGCGGGGC TTTTTCATGCGCGCT Rpic_3374 3537124 - 3534926 - | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding Rpic_3375 3538125 - 3537121 - | molybdopterin dehydrogenase FAD-binding Rpic_3376 3538874 - 3538134 - | (2Fe-2S)-binding domain protein TERM 2847 3538817 - 3538794 - G 89 -10.2 -4.56597 | gap 1, opp_overlap 3538795 3538806, overlap 3538795 CGCGCTCTGCAAAAA GCCGCGCCGGC TCG GCC-GCGCGGG CGCTCCCTCCGGTTC TERM 2848 3538816 - 3538795 - G 80 -13.7 -3.33744 | gap 1, opp_overlap 3538795 3538806, overlap 3538794 GCGCTCTGCAAAAAG CCGCGCCGGC TCG GCC-GCGCGG GCGCTCCCTCCGGTT Rpic_3377 3540347 - 3539037 - | peptidase M20 TERM 2849 3540166 - 3540212 + g 75 -2.9 -4.77036 | TCGATGTCCTTGCTG CCCGATTCGATCGAGACCA AAGTCTTCA TGGTGTCGATCAGCGCGGG TTTTTCCTGCTGGGC TERM 2850 3541201 - 3541211 + G 72 -6.8 -4.27117 | TCGACGGGCTGCTCG CCAG CGA CTGG TTTGTCTTCTGGCGC Rpic_3378 3540531 - 3541325 + | Domain of unknown function DUF1835 TERM 2851 3541356 - 3541375 + T 100 -10.7 -5.47159 | GCCAGTCTGCCCCGA GGAGCGC CCAAAA GCGCTCC TTTTTGTTTGTTCAC Rpic_3379 3543370 - 3541430 - | potassium efflux system protein Rpic_3380 3543957 - 3543394 - | NAD(P)H dehydrogenase (quinone) TERM 2852 3544446 - 3544417 - g 83 -9.3 -4.45485 | gap 1, opp_overlap 3544436, overlap 3544418 3544422 ACGACATCGACAAAA CGGAA-GCCGCGCA AGG TGCGCCGCGTTCCA CCGTGCTGGTGCGCG Rpic_3381 3544356 - 3545051 + | GCN5-related N-acetyltransferase TERM 2853 3545065 - 3545098 + F 82 -11.9 -3.92592 | gap 1, opp_overlap 3545072, overlap 3545072 3545077 AAGCGCATCGCTCTG CAACAAACGCCCGG CTCACCA CCGGGCGTTT-TTG TTTGGTGTTGGGCGT TERM 2854 3545072 - 3545092 + F 100 -11.1 -5.37171 | opp_overlap 3545072, overlap 3545065 3545077 TCGCTCTGCAACAAA CGCCCGG CTCACCA CCGGGCG TTTTTGTTTGGTGTT TERM 2855 3545092 - 3545072 - f 89 -11.8 -4.15044 | opp_overlap 3545072 3545065 3545077 TCGCTCTGCAACAAA CGCCCGGC TCACC ACCGGGCG TTTTTGTTTGGTGTT TERM 2856 3545519 - 3545486 - g 81 -11.7 -4.09685 | gap 1, overlap 3545460 3545487 3545502 TCGTACGCCTGAAAA CGCCAG-GCGGCTACA AGG TGCCGCCGCACTGGCA CACCGAGACCGAGAA TERM 2857 3545518 - 3545487 - g 72 -13 -3.05597 | gap 1, overlap 3545460 3545486 3545502 CGTACGCCTGAAAAC GCCAG-GCGGCTACA AGG TGCCGCCGCACTGGC ACACCGAGACCGAGA Rpic_3382 3545260 - 3545751 + | conserved hypothetical signal peptide protein Rpic_3383 3545876 - 3546010 + | hypothetical protein Rpic_3384 3546114 - 3546413 + | hypothetical protein Rpic_3385 3546435 - 3546872 + | hypothetical protein Rpic_3386 3547051 - 3546938 - | hypothetical protein TERM 2858 3547129 - 3547181 + r 72 -13.6 -2.61695 | overlap 3547128 3547126 TCCGCCGTCAGAGGG TCG-AAGCCGTCTGTCAGAGGTCGAA AGT TTCGACCTCTGACTG-CGGAATGCGA GTATTTGAGACTCGC Rpic_3387 3547789 - 3547301 - | transcriptional regulator, AsnC family Rpic_3388 3547945 - 3549051 + | 4-hydroxyphenylpyruvate dioxygenase TERM 2859 3549083 - 3549108 + T 100 -19.1 -4.73388 | overlap 3549065 GGCGTGCTGTACCCG CACCCCGATGG TTCG CCATCGGGGTG TTTTTCATGGGCGTT TERM 2860 3549242 - 3549225 - T 100 -14.1 -5.4833 | opp_overlap 3549224 GCAGGCAATAAAAAA CGGCGCC CGAA GGCGCCG CTTGCGTGCGGAGAT Rpic_3389 3549887 - 3549270 - | putative signal transduction protein with EFhand domain Rpic_3390 3550718 - 3550035 - | putative general secretion pathway related transmembrane protein Rpic_3391 3550893 - 3551363 + | general secretion pathway protein G Rpic_3392 3551396 - 3551890 + | general secretion pathway protein H Rpic_3393 3551887 - 3552285 + | general secretion pathway protein I Rpic_3394 3552275 - 3553018 + | putative general secretory pathway J transmembrane protein TERM 2861 3553809 - 3553786 - g 76 -13.8 -3.10732 | overlap 3553778 AGATCAACGCCAACA CGGCCAGCGC CGAA GTGCTGGCCG CCGTCATCCCGAACC TERM 2862 3554083 - 3554060 - g 70 -7.4 -3.99374 | gap 1, opp_overlap 3554060, overlap 3554061 TCCGATCAACAATAA CGCGACCCGCA TCG TGTGGGTC-CG CCGCATTGACGAGAT Rpic_3395 3553020 - 3554108 + | General secretion pathway protein K Rpic_3396 3554270 - 3555700 + | General secretion pathway L Rpic_3397 3555711 - 3556280 + | General secretion pathway M protein TERM 2863 3556468 - 3556481 + G 75 -8.1 -4.25104 | overlap 3556434 GCGCATCGCCGCAGC CACGG GCCA CCGTG TTTTGCTGGCCGACA Rpic_3398 3556298 - 3557140 + | putative general secretory pathway N transmembrane protein TERM 2864 3558437 - 3558480 + G 81 -15.8 -3.00022 | GCCGGTCTACCGCAA CCTGCGCGCCGTGATCGACG ACCT CGACGCGCGCCGCGCGCAGG TCTATATCGAATCGA TERM 2865 3558545 - 3558572 + G 91 -6.8 -5.03314 | opp_overlap 3558543 3558547, overlap 3558543 3558542 GTTGGGCATCCAATG GATGGCCGGCGC GGGC GGGCCGACCACC TTTTTTGGCGGTGGC Rpic_3399 3557178 - 3559601 + | general secretion pathway protein D TERM 2866 3560258 - 3560200 - g 88 -9.3 -4.59109 | GACATTGCCGAAAAA CGC-CTGCCGCAGGACGGCCGCATCACGC TGC GCGTGG-GCGGTCGCCCGGTGGACGTGCG TGTGAGCACCCTGCC Rpic_3400 3559618 - 3561174 + | general secretory pathway protein E TERM 2867 3561709 - 3561733 + G 71 -9.9 -3.70068 | overlap 3561702 GCTGGCCTTCACGTA CCCCGCCATCG TCA CGGTGGTGGCG TTTGCGATTGTGATC Rpic_3401 3561197 - 3562408 + | general secretion pathway protein F TERM 2868 3562528 - 3562507 - T 72 -2.8 -4.78981 | opp_overlap 3562516 AGTAAGCAAAAGAAA GGCGCGCC CGAGAT GGCGACCC ATCCCTTGAATTTGT TERM 2869 3562652 - 3562687 + T 73 -9.8 -3.69354 | gap 1, opp_overlap 3562657, overlap 3562657 3562679 GCTCAACGTCAAAAG AGA-AAGGCCAACCCCA TCG TGAGGTTGGCCTTGTCG TTTGGGCTTGTGCCC TERM 2870 3562657 - 3562681 + T 90 -14.3 -3.61267 | opp_overlap 3562657, overlap 3562652 3562679 ACGTCAAAAGAGAAA GGCCAACCCCA TCG TGAGGTTGGCC TTGTCGTTTGGGCTT TERM 2871 3562681 - 3562657 - T 100 -16.5 -4.45771 | opp_overlap 3562657 3562652 3562679 ACGTCAAAAGAGAAA GGCCAACCCCA TCG TGAGGTTGGCC TTGTCGTTTGGGCTT TERM 2872 3562679 - 3562714 + T 76 -6 -4.62168 | opp_overlap 3562657, overlap 3562657 3562652 CCCATCGTGAGGTTG GCCTTGTCGTTTGGGC TTGT GCCCAGAGGGTGTGGC TTTTGTCCTTTGACT Rpic_3402 3563690 - 3563007 - | hypothetical protein TERM 2873 3564103 - 3564066 - g 78 -15.5 -2.78384 | TTGGCCTGCAGCAGA CGCCTGCGCAGGCGC CCGAAGCC GCGCCTGCGCTGTCG CACCGCGTAAAAGAT TERM 2874 3564307 - 3564347 + G 95 -11.9 -4.41494 | gap 2, opp_overlap 3564307 GGCCGTGGCCGAATA CCTGCG-CGTTTCGC-GCG GCGTG CGCTGCGACGCGACGCAGG TTTTCATTACCGATG Rpic_3403 3563783 - 3565252 + | transcriptional regulator, GntR family with aminotransferase domain TERM 2875 3567603 - 3567618 + G 77 -4.7 -4.67982 | CAAGATCAACCAGTC GTCCT GCAATA AGGAC TTTTCTTGCGTGAAC TERM 2876 3568311 - 3568291 - g 72 -13.3 -3.05384 | overlap 3568296 GTCCGCGCGATCGAA CTCAACGGC GTG GCCGTCGAG AAGAACAAGACCGCG Rpic_3404 3565534 - 3569094 + | pyruvate ferredoxin/flavodoxin oxidoreductase TERM 2877 3569123 - 3569152 + T 91 -13.7 -3.88787 | opp_overlap 3569129, overlap 3569129 TTCAGCATCGCCATG AAAAAACGGAGGC TTCG GCCTCCGTTTTTC TTTGTGCGCGTCTGA TERM 2878 3569146 - 3569129 - T 100 -12.7 -5.14965 | opp_overlap 3569123 3569129 ATCGCCATGAAAAAA CGGAGGC TTCG GCCTCCG TTTTTCTTTGTGCGC TERM 2879 3569129 - 3569146 + T 100 -12.7 -5.38054 | opp_overlap 3569129, overlap 3569123 ATCGCCATGAAAAAA CGGAGGC TTCG GCCTCCG TTTTTCTTTGTGCGC Rpic_3405 3570611 - 3569172 - | Exodeoxyribonuclease I Rpic_3406 3570754 - 3571749 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_3407 3572388 - 3571759 - | metal dependent phosphohydrolase TERM 2880 3572368 - 3572353 - G 73 -6 -4.4009 | opp_overlap 3572353 3572355 3572357, overlap 3572355 CTCCATGTGAGAAAA CGCCGC GCGC GGGGCG GTGTGCTTTGGATCG Rpic_3408 3572517 - 3573248 + | transcriptional regulator, Crp/Fnr family Rpic_3409 3573479 - 3574291 + | hypothetical protein TERM 2881 3574342 - 3574325 - T 100 -9.8 -5.4505 | opp_overlap 3574325 GGCGCCAACAAAAAA CCCGGG TTGAAG CCCGGG TTTTTTATATCTAGC TERM 2882 3574325 - 3574342 + T 100 -10.5 -5.4251 | opp_overlap 3574325 GGCGCCAACAAAAAA CCCGGGT TGAA GCCCGGG TTTTTTATATCTAGC Rpic_3410 3575532 - 3574372 - | porin Gram-negative type TERM 2883 3575784 - 3575770 - R 81 -4.3 -4.91511 | ATTGCATCAGAAAAA TCATC CAAGC GATGA TAAAAATTAAAGTAT TERM 2884 3575875 - 3575898 + r 100 -9.6 -5.50499 | opp_overlap 3575877 3575879 TCACATCGACTTTAA GAGACCGC CTTAAACA GCGGTCTC TTTTTTTGCCTGTCA Rpic_3411 3576512 - 3575928 - | two component transcriptional regulator, LuxR family Rpic_3412 3578642 - 3576654 - | methyl-accepting chemotaxis sensory transducer TERM 2885 3578127 - 3578169 + g 76 -5.5 -4.56133 | opp_overlap 3578147 CAGCGCCTTGTAGCT CGG-GTGGGCGCGATCAAGCA GCG TGCC-GATCGCGCGTTCGCCG TTTTCCTTCTTGAGC Rpic_3413 3581540 - 3578763 - | hypothetical protein Rpic_3414 3581888 - 3581661 - | hypothetical protein TERM 2886 3581822 - 3581850 + g 70 -11.6 -3.40784 | TGACGCGATCGCGTG CGGCCTGGGCCG CCAGT TGACCCGGGCCG TTATCAGGTTTGGTT TERM 2887 3582019 - 3581986 - R 87 -17.5 -3.03771 | gap 1, overlap 3581988 CGATACGGGCGAACA GACGCACTGCCGGCGG GTC CCGCCGGCA-TGCACC AGCGACACGGCCAGC TERM 2888 3582017 - 3581988 - R 83 -16.5 -3.07522 | gap 1, overlap 3581986 ATACGGGCGAACAGA CGCACTGCCGGCGG GTC CCGCCGGCA-TGCA CCAGCGACACGGCCA Rpic_3415 3582874 - 3582086 - | short-chain dehydrogenase/reductase SDR Rpic_3416 3583157 - 3583645 + | transcriptional regulator, MarR family TERM 2889 3583639 - 3583657 + T 100 -13.2 -4.27316 | opp_overlap 3583639 GCGCGTGCTGCACAA CGCCTGAT CGG ATCAGGCG TTTTCGGTTGGGCAG TERM 2890 3583657 - 3583639 - T 81 -13.2 -3.28712 | opp_overlap 3583639 GCGCGTGCTGCACAA CGCCTGAT CGG ATCAGGCG TTTTCGGTTGGGCAG Rpic_3417 3584426 - 3583728 - | two component transcriptional regulator, LuxR family Rpic_3418 3585449 - 3584529 - | peptidase S1 and S6 chymotrypsin/Hap Rpic_3419 3586074 - 3585469 - | putative lipoprotein transmembrane Rpic_3420 3586805 - 3586197 - | transcriptional regulator, TetR family TERM 2891 3586287 - 3586275 - G 75 -9.1 -3.96148 | GTCGCCCATCAGAAA CGCCA CGT TGGCG TTGGAGCGAAACGAT TERM 2892 3586586 - 3586630 + g 93 -14.1 -3.9941 | GCTTCACCACCTTCT CGCGGTAGTGCACCACGCCCG CGT CGAGCGTGGAGAGCTGCAGCG TTTCCTTGTCGCCGA TERM 2893 3586779 - 3586795 + g 85 -7.9 -4.71426 | overlap 3586768 CGCGCGTTCGCCACG CTGGCGG CGG CCGTCGG TTTTGTTCATGGCAA TERM 2894 3587841 - 3587896 + G 79 -11.1 -3.91716 | overlap 3587851 TCCTGCTGCAGTTCG GGCG-CGGCTTGTCGGCGTTGGCAGCG GGGC TGGTGTTCACGCCGGC-GGCCGTCGCC TTCTTTACGGGCTCG TERM 2895 3588172 - 3588122 - g 73 -12.6 -3.34517 | gap 1, overlap 3588099 3588120 AGCGGCGTGGAAACA GCCCA-GGCCGGCATGGGCGC CGGTACCGTT ACGACCATGCAGGCCGTGGGC AATGCGGTGGGCGTG Rpic_3421 3586910 - 3588376 + | major facilitator superfamily MFS_1 Rpic_3422 3588982 - 3588383 - | phosphoesterase PA-phosphatase related TERM 2896 3588627 - 3588605 - G 74 -13.4 -3.18429 | opp_overlap 3588607, overlap 3588596 3588595 CAAAAGCGCCAGCAA CACGCCCACG CGG CGCAGGCGTG CGTTCCACATCAGGC TERM 2897 3588764 - 3588737 - G 74 -11.2 -3.66654 | overlap 3588755 CAGTTCAATCGCAAA CGGCCTGGGGTG ATAC CACGCGAGGCCG AAGCCGACGTTGATC Rpic_3423 3589235 - 3589441 + | diguanylate cyclase TERM 2898 3590425 - 3590413 - g 76 -5.5 -4.54297 | CGAAGAAGAAAAGAA GCGTA TTG CACGC GAGCTTCATGATGAC Rpic_3424 3589919 - 3591055 + | PAS/PAC sensor signal transduction histidine kinase Rpic_3425 3592825 - 3591455 - | amino acid permease-associated region TERM 2899 3591872 - 3591882 + g 72 -8.2 -4.07568 | opp_overlap 3591838, overlap 3591848 GCGCGCGTGCAGTGC GCCG TCG CGGC TTTTGGCAAAGAGCG Rpic_3426 3593408 - 3593100 - | hypothetical protein TERM 2900 3593462 - 3593431 - R 89 -10 -4.67234 | overlap 3593432 ATCGAACCTCAAAAA GCCGGCACCGCAAC GGGG ATAGCGGCGCCGGA ATGCAGTTGCACCGG TERM 2901 3593461 - 3593432 - R 81 -13.5 -3.39618 | overlap 3593431 TCGAACCTCAAAAAG CCGGCACCGCAAC GGGG ATAGCGGCGCCGG AATGCAGTTGCACCG Rpic_3427 3595140 - 3593518 - | chaperonin GroEL Rpic_3428 3595555 - 3595238 - | chaperonin Cpn10 Rpic_3429 3596374 - 3595730 - | hypothetical protein Rpic_3430 3596564 - 3597007 + | heat shock protein Hsp20 Rpic_3431 3597041 - 3597460 + | heat shock protein Hsp20 TERM 2902 3597491 - 3597517 + F 79 -12.9 -3.54424 | overlap 3597492 CTGTTTTGCCTTGCA AGCGGGCGCGC TCCTT GCGCGCCTGCA TTTGGCACCGTGCCC TERM 2903 3597492 - 3597516 + F 79 -16.4 -2.72511 | overlap 3597491 TGTTTTGCCTTGCAA GCGGGCGCGC TCCTT GCGCGCCTGC ATTTGGCACCGTGCC Rpic_3432 3597567 - 3597812 + | hypothetical protein Rpic_3433 3599256 - 3597940 - | hypothetical protein Rpic_3434 3600200 - 3599394 - | hypothetical protein Rpic_3435 3600916 - 3600200 - | peptidase C39 bacteriocin processing TERM 2904 3600940 - 3600968 + r 93 -15.9 -3.55563 | opp_overlap 3600940 CCCTTGGGGAACGGA CACCCGACCGCCG GAG CAGCGGCCGGGTG TTTGGACGCTAGCCT TERM 2905 3600968 - 3600940 - R 95 -20.3 -2.52464 | opp_overlap 3600940 CCCTTGGGGAACGGA CACCCGACCGCCG GAG CAGCGGCCGGGTG TTTGGACGCTAGCCT Rpic_3436 3601762 - 3600983 - | hypothetical protein TERM 2906 3601821 - 3601799 - R 71 -7.7 -4.13561 | gap 1 TGCTGTTAAAAAAGA GTGC-CCGCC GGGG GACGGAGCAC AAAGACGTTGGATAC Rpic_3437 3602397 - 3601789 - | conserved hypothetical signal peptide protein TERM 2907 3602417 - 3602434 + r 72 -14.1 -2.62184 | GCCCGCCACGCGAGA GCGGCGC CAGT GCGCCGC TGATCTGCGACGCAA Rpic_3438 3602903 - 3602394 - | hypothetical protein TERM 2908 3603100 - 3603061 - H 80 -15 -3.10112 | opp_overlap 3603096, overlap 3603056 3603066 ACTGAATTGAGGGAA GCAAACCTGCCCGGACAA GGGA TCGTCCGGTCAGGCATGC CAAATGGAATGTTTC TERM 2909 3603095 - 3603066 - H 93 -14.3 -3.93556 | overlap 3603056 3603061 ATTGAGGGAAGCAAA CCTGCCCGGACAA GGGA TCGTCCGGTCAGG CATGCCAAATGGAAT Rpic_3439 3603329 - 3604309 + | Alpha/beta hydrolase fold-3 domain protein TERM 2910 3604513 - 3604456 - T 71 -9.6 -3.72695 | overlap 3604458 AGCCCGCCGAGCAAA GACGGCTCGGTCCACTCTAAGCCGCA GAAGGG CGCGGCCTAGGGCGGCCCAGGGCGGC TTCCGGCTTGCCGGC TERM 2911 3604511 - 3604458 - T 70 -10.8 -3.44848 | overlap 3604456 CCCGCCGAGCAAAGA CGGCTCGGTCCACTCTAAGCCGCA GAAGGG CGCGGCCTAGGGCGGCCCAGGGCG GCTTCCGGCTTGCCG Rpic_3441 3604919 - 3604593 - | Ethyl tert-butyl ether degradation EthD Rpic_3442 3605374 - 3604940 - | hypothetical protein Rpic_3443 3605839 - 3605408 - | hypothetical protein Rpic_3444 3606022 - 3606483 + | transcriptional regulator, MarR family TERM 2912 3606502 - 3606521 + F 100 -8.5 -5.44721 | overlap 3606518 CATGCGTATCGCCGA CGGGCGC CTGATC GCGTCCG TTTTTTTAAACTGAT Rpic_3445 3606622 - 3607047 + | OsmC family protein TERM 2913 3607339 - 3607324 - g 70 -4.7 -4.42653 | ACGTTAGCCAGAAAA CCATC ACCGTG GATGG CAAGCCGATCAGCCT Rpic_3446 3607089 - 3608108 + | Alpha/beta hydrolase fold-3 domain protein TERM 2914 3608165 - 3608210 + F 85 -12.6 -3.85256 | gap 1, opp_overlap 3608170 3608171, overlap 3608166 GTTCATTGGTCAGCC AGCAATGCGCCCGCC-CGTGT CTTTT GCACGCGGTGGGCGTGTTGCG TTGTGTTTCGGTCTG TERM 2915 3608166 - 3608209 + F 81 -16.1 -2.90431 | gap 1, opp_overlap 3608170 3608171, overlap 3608165 TTCATTGGTCAGCCA GCAATGCGCCCGCC-CGTGT CTTTT GCACGCGGTGGGCGTGTTGC GTTGTGTTTCGGTCT TERM 2916 3608499 - 3608531 + G 72 -8.5 -4.00042 | gap 1, opp_overlap 3608504, overlap 3608502 ACCCTGCTGCCGCTC GAAGACGGCAAGGC TACGCT GCCTT-CCGTCATC TTCTTTCATGCCGAA TERM 2917 3608746 - 3608726 - g 86 -16.1 -3.17392 | opp_overlap 3608727 3608727 CATTGGCGAACTCAA GCGGCGCGC CGA GCACGCCGC CGGCCATGAATTCCG Rpic_3447 3608409 - 3609662 + | putative heat shock protein Rpic_3448 3610329 - 3609907 - | hypothetical protein Rpic_3449 3610880 - 3610512 - | hypothetical protein TERM 2918 3611224 - 3611260 + H 90 -14.5 -3.57144 | opp_overlap 3611226 3611245, overlap 3611232 CGCTTCACCCTCAGA CAGTGGAACGCGAGAGT CAA ACACTGGCGTTTCACTG TTTGAGGGTCGAGCG TERM 2919 3611761 - 3611751 - g 81 -5.4 -4.93365 | opp_overlap 3611756 GCTGAGAAGGAAAAA TCGA CCG TCGA CTGGGATGACGTGGT Rpic_3450 3611589 - 3612263 + | type I restriction system endonuclease TERM 2920 3612331 - 3612348 + T 100 -11.3 -5.60689 | opp_overlap 3612331, overlap 3612321 CGGGCAAACAAAAAA CCAACCG AAAA CGGTTGG TTTTTTCTTATGTGG TERM 2921 3612348 - 3612331 - T 100 -11.3 -5.63517 | opp_overlap 3612331 3612321 CGGGCAAACAAAAAA CCAACCG AAAA CGGTTGG TTTTTTCTTATGTGG TERM 2922 3612478 - 3612494 + T 75 -7.9 -4.18018 | CCAGGCCCTTTCAAT CGGGGGT TTA ACCCGCG TTTTCCATGCCCGGA Rpic_3451 3614206 - 3612485 - | 5'-Nucleotidase domain protein Rpic_3452 3614700 - 3614203 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rpic_3453 3615367 - 3614705 - | hypothetical protein Rpic_3454 3616205 - 3615384 - | hypothetical protein TERM 2923 3616072 - 3616114 + g 71 -14.1 -2.70143 | gap 1, overlap 3616069 3616109 AGTTCGGCCGGGTTG CCGTCGGCCAGCATCTCGCG GTAC TGCGCGATGCCGGC-GGCGG TGCTGTCCTTGGCGT TERM 2924 3616214 - 3616230 + r 76 -10.1 -3.83026 | GTTTCACGGTCCCCT CCGTGGG TCG CCTACGG TTTGATATAGGCGAA Rpic_3455 3616680 - 3616225 - | Domain of unknown function DUF1791 Rpic_3456 3617008 - 3616697 - | Sulphur oxidation protein SoxZ TERM 2925 3616960 - 3616973 + g 70 -5.9 -4.27316 | TCAGGATCTTCACGT CGGTG GTGC CGCCG TTTTCCATTGCGCGA Rpic_3457 3617497 - 3617027 - | hypothetical protein TERM 2926 3617402 - 3617378 - G 74 -11.3 -3.59979 | GCCCTTCACGGCAAA GGCGGCCTTGT TCC ACTCGGCCGCC TGGGCCGGCGTGGCA Rpic_3458 3617855 - 3617508 - | cytochrome c class I TERM 2927 3617827 - 3617777 - G 71 -12.3 -3.21099 | overlap 3617761 CGCGGGCAGCATCAA CGGCAGCCAGGGCGGGCGTGGCG GACAG CGCCAGGCCGGCCAGCACCGCCG CAGCCGCGAGCGTGG TERM 2928 3618005 - 3617981 - R 79 -8.4 -4.54727 | opp_overlap 3617980 3617999 GCCCGCAAAGCAAAA CGCCCGGTAC TTTTC GGCCCGGGCG CTGGTTTGATGGGGA Rpic_3459 3618916 - 3618029 - | protein of unknown function DUF6 transmembrane TERM 2929 3618471 - 3618458 - G 70 -5.9 -4.25104 | overlap 3618459 GCTGGCCCACGAAAA CGCCG CGCA CAGCG TCAGCAAGAAGCCGG Rpic_3460 3620334 - 3619042 - | Flavocytochrome c sulphide dehydrogenase flavin-binding Rpic_3461 3620687 - 3620331 - | conserved hypothetical signal peptide protein TERM 2930 3620798 - 3620767 - R 76 -13.2 -3.05596 | gap 1, opp_overlap 3620774, overlap 3620774 GATGCGTGCAGCCAA CAAAAAACGCAGCGC GGT GC-CTGCGTTTCTTG CGATGCGGTGTGGCC TERM 2931 3620791 - 3620774 - R 100 -7.7 -5.4833 | gap 1, opp_overlap 3620774, overlap 3620767 GCAGCCAACAAAAAA CGCAGCGC GGT GC-CTGCG TTTCTTGCGATGCGG TERM 2932 3620774 - 3620791 + r 75 -7.7 -4.1822 | gap 1, opp_overlap 3620767 3620774 GCAGCCAACAAAAAA CGCAGCGC GGT GC-CTGCG TTTCTTGCGATGCGG Rpic_3462 3621640 - 3620822 - | transport-associated Rpic_3463 3622058 - 3621681 - | protein of unknown function UPF0102 TERM 2933 3621779 - 3621751 - G 71 -7.4 -4.15565 | GCGATGACGTCAAAA CGGCAGGCCG GCACATCTT CAACCTGCCG CGCGAGAAAATCTTC Rpic_3464 3622094 - 3622996 + | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Rpic_3465 3623775 - 3623023 - | rare lipoprotein A Rpic_3466 3623956 - 3624612 + | beta-lactamase domain protein TERM 2934 3624719 - 3624701 - g 78 -13.8 -3.28712 | TGCGCCGGCCGACAA GCCCCGCC GCA AGCGGGGC AACCAGCTGCCCGAC TERM 2935 3624944 - 3624922 - g 76 -9.8 -4.11484 | overlap 3624923 TGCAATGGTGGAAAA CGCAGCCC GAGGCAT GGGCCGCG TGCCGCACGAACCTC Rpic_3467 3624609 - 3625340 + | hypothetical protein Rpic_3468 3625462 - 3625881 + | hypothetical protein TERM 2936 3625948 - 3625988 + T 91 -13.4 -3.85817 | gap 1, opp_overlap 3625940, overlap 3625949 CGAGATACGGCCACC CCTGAACGGCCTGTCCGAT GGAA ATCGG-CAGGCCGTTCAAC TTTGTGGGGCGCGGT TERM 2937 3625949 - 3625987 + T 85 -16.9 -2.91276 | gap 1, opp_overlap 3625940, overlap 3625948 GAGATACGGCCACCC CTGAACGGCCTGTCCGAT GGAA ATCGG-CAGGCCGTTCAA CTTTGTGGGGCGCGG Rpic_3469 3626357 - 3626007 - | arsenate reductase and related TERM 2938 3626184 - 3626217 + g 72 -3.2 -4.62069 | gap 1, overlap 3626185 GTTTTCGCGGATCAG GCTGCGCAGCG GTGTGTCGAGTTG CGCTGCG-AGC TTTTTGAGGTCGGCC TERM 2939 3626563 - 3626544 - R 85 -9.2 -4.69549 | overlap 3626556 AACCCAAAAGCAAAA GGGCCGAC CAAA GCCGACCC CGCAAAACAATGCCA Rpic_3470 3627867 - 3626593 - | peptidase M20 TERM 2940 3627940 - 3627906 - R 80 -11.3 -3.71873 | overlap 3627910 GGACGGAGATTGAAA GTGACTGAGCCCCCG TTGTG CGGGGGCTCAGGATC GGCACCGATGATGCG TERM 2941 3627936 - 3627910 - R 88 -19.5 -2.67244 | overlap 3627906 GGAGATTGAAAGTGA CTGAGCCCCCG TTGTG CGGGGGCTCAG GATCGGCACCGATGA Rpic_3471 3628487 - 3627960 - | Ureidoglycolate hydrolase Rpic_3472 3629494 - 3628484 - | allantoicase TERM 2942 3628594 - 3628613 + g 73 -12.2 -3.40403 | overlap 3628611 3628612 CCGCCTCGTAGTAGT GCTGCAGA TCCA TCTGCAGC TTCTGCTCGGGCAGC TERM 2943 3629768 - 3629758 - H 70 -4.6 -4.46514 | AGTGAGCGAAACAAA GCCG TGA CGAC AATCGCAGCAAACCG Rpic_3473 3629838 - 3631178 + | sodium:dicarboxylate symporter Rpic_3474 3631171 - 3631911 + | transcriptional regulator, GntR family TERM 2944 3631912 - 3631945 + F 73 -8.8 -3.86346 | overlap 3631912 GCCCTCCTCGCCTGA CC-GCGCGTGCCGACG TATA CG-CTGCGCGCGCCGG TTTCTGCCGAGCTGG Rpic_3475 3631918 - 3632502 + | protein of unknown function UPF0029 Rpic_3476 3632964 - 3632506 - | hypothetical protein Rpic_3477 3633955 - 3633044 - | transcriptional regulator, LysR family TERM 2945 3634369 - 3634349 - g 75 -4 -4.65895 | overlap 3634352 GCGGTGATGGAAAAA GAAGGC ATCACCACG GCCTTC GGCGTGCCCGGTGCC Rpic_3478 3634301 - 3636076 + | glyoxylate carboligase TERM 2946 3636567 - 3636530 - g 79 -7.1 -4.47551 | gap 1, opp_overlap 3636532 3636537, overlap 3636532 ACTGAAGGCAGAAAA GATCGATC-TGCTGATCG AGC CGATCAACACGTTCGATA TTCCGGGCTTTTACC TERM 2947 3636565 - 3636532 - g 73 -9.7 -3.84304 | gap 1, opp_overlap 3636532 3636537, overlap 3636530 TGAAGGCAGAAAAGA TCGATC-TGCTGATCG AGC CGATCAACACGTTCGA TATTCCGGGCTTTTA Rpic_3479 3636120 - 3636902 + | hydroxypyruvate isomerase Rpic_3480 3637540 - 3638454 + | 2-hydroxy-3-oxopropionate reductase TERM 2948 3638475 - 3638504 + F 100 -9.9 -4.84527 | overlap 3638477 3638490 CGCCTAAGTTGTGTG CACTGTCGCAGCC TTCG GGCGGCGGCAGTC TTTTTGCTGTCTCCC TERM 2949 3638477 - 3638502 + F 89 -12.5 -4.03909 | overlap 3638475 3638490 CCTAAGTTGTGTGCA CTGTCGCAGCC TTCG GGCGGCGGCAG TCTTTTTGCTGTCTC Rpic_3481 3638532 - 3639851 + | Hydroxypyruvate reductase Rpic_3482 3640478 - 3641956 + | pyruvate kinase Rpic_3483 3643465 - 3641981 - | oxygen-independent coproporphyrinogen III oxidase TERM 2950 3643063 - 3643047 - G 88 -9.3 -4.63218 | opp_overlap 3643059, overlap 3643049 TCGTGCGCAAGAAAA GTCGGCG TGC CGCCGCC CCAATGCAACTGCGT TERM 2951 3643295 - 3643309 + g 70 -5.6 -4.30719 | opp_overlap 3643296, overlap 3643296 CAAGGCGTCGAGGTA ATCGGC GTT GCCGAA TTTGTTGTGAAAGCG TERM 2952 3644105 - 3644125 + G 70 -2.4 -4.71426 | CCCCGCTCTCAGGTG CGACGTCG ACCGC CGACAACG TTTTGTTCATCCGCC TERM 2953 3644698 - 3644716 + G 71 -12.4 -3.25942 | GGCGTGGAACTGCGG CGCGCGTT GCA GACGCGCG TTGATGTGGGCGGGT Rpic_3484 3643720 - 3644808 + | putative Leu/Ile/Val-binding signal peptide protein TERM 2954 3645045 - 3645068 + T 88 -13.2 -3.60419 | gap 1, opp_overlap 3645045 ACGTCAAAAGAAAAA GGCCAACC-CG TCG CGAGGTTGGCC TTGTCGTTTGGGCGT TERM 2955 3645068 - 3645045 - T 100 -13.2 -5.46706 | gap 1, opp_overlap 3645045 ACGTCAAAAGAAAAA GGCCAACC-CG TCG CGAGGTTGGCC TTGTCGTTTGGGCGT TERM 2956 3645202 - 3645165 - T 84 -5.6 -5.00884 | gap 2 AGCGGGCGGAAAAAA GGCGGGG-AA-CTGTCTG AGCG CAGCGAGTTTTCCCCGCC TCCGCCCGGTTACGG Rpic_3485 3647470 - 3645350 - | UvrD/REP helicase TERM 2957 3647508 - 3647491 - H 78 -2.5 -5.07486 | CAGGCGGAAGAAAAA GCAGGCG GGAA CGACAGC GGAGGGCGATGGTAG Rpic_3486 3647744 - 3648070 + | hypothetical protein TERM 2958 3648102 - 3648153 + F 100 -18 -4.72846 | gap 1, opp_overlap 3648093 3648091, overlap 3648148 3648150 CCAACAGCCGCACTC CGGCCACACGCTTTGGGTTGGCGGC CCC GCCAGCGCCCCGAAG-GTGTGGCCG TTTTTGGCTGTGTGG TERM 2959 3648511 - 3648526 + F 83 -4.6 -5.1417 | CACCATGAGGCATCA GGCTGC GCGG GTGGCC TTTTTGCTTTTCTGG TERM 2960 3649551 - 3649528 - g 72 -8.8 -3.96148 | overlap 3649532 CGCGCCCACCAGAAA GTCATCACCG CCGC CGGTGACGGC GAGATCACCAGCGGC Rpic_3487 3648598 - 3649725 + | glycine cleavage system T protein Rpic_3488 3649773 - 3650153 + | glycine cleavage system H protein TERM 2961 3650164 - 3650204 + F 81 -14 -3.37522 | gap 1, overlap 3650165 GCTAAGCCGGTCCTC CGGCCGGTGCGC-GCGC CCTGACCT GCGCTGCGCATCGGCCA TTGCTTGCATCGCCT TERM 2962 3650165 - 3650203 + F 83 -17.5 -2.62192 | gap 1, overlap 3650164 CTAAGCCGGTCCTCC GGCCGGTGCGC-GCGC CCTGACCT GCGCTGCGCATCGGCC ATTGCTTGCATCGCC Rpic_3489 3650238 - 3653177 + | glycine dehydrogenase TERM 2963 3653221 - 3653247 + F 100 -18.7 -3.70902 | GCGCTACGCCACAGG CGGCCGCCTCG CACCA CGGGGCGGCCG TTTGCATCTGAACAA TERM 2964 3654202 - 3654162 - g 71 -9.6 -3.7645 | gap 1, opp_overlap 3654196 3654200, overlap 3654153 3654159 3654198 AGTTAACGAAGAGAA CGCCGCGGGCGGGCG-CGT CGTC ACGGCACCGACCAACGGCG CAGCCGGGATCATCC Rpic_3490 3653326 - 3654702 + | L-serine dehydratase 1 TERM 2965 3655664 - 3655708 + G 86 -12.8 -3.85698 | gap 1 ATGCCGGCCGGCAAG GCGCTCTCTGCGTTCGGCACG GATG TGTGGCGCACGCAG-GTGCGC TTTATCGGCGCAGGC Rpic_3491 3654875 - 3656929 + | oligopeptide transporter, OPT family Rpic_3492 3656944 - 3657459 + | GCN5-related N-acetyltransferase Rpic_3493 3658608 - 3657475 - | glutamate--cysteine ligase GCS2 Rpic_3494 3659837 - 3658614 - | sodium/hydrogen exchanger TERM 2966 3659797 - 3659777 - G 88 -10.3 -4.42386 | GGCCGATCCAGAAAA GACCGCCAG GCG CGGGCGGCC ACGAAGGGAAGAGAT TERM 2967 3660001 - 3659986 - R 100 -11.8 -5.45802 | opp_overlap 3659986 GCCGGAAAAGAAAAA CCGCCC CGGA GGGCGG TTTTCATACTGCGAA TERM 2968 3659986 - 3660001 + r 93 -11.8 -4.30576 | opp_overlap 3659986 GCCGGAAAAGAAAAA CCGCCC CGGA GGGCGG TTTTCATACTGCGAA Rpic_3495 3661181 - 3660036 - | Extracellular ligand-binding receptor Rpic_3496 3665283 - 3661312 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 2969 3661646 - 3661617 - G 74 -13.5 -3.28712 | GGTTTTCCTGCACAA CGGCCACGCTGCC GACA GCCAGCACGGCCG CCAGTTGGCGCAGCC TERM 2970 3665076 - 3665128 + g 100 -24.2 -2.91144 | gap 1, overlap 3665082 CGCCGTCATGCACGT CGGAGACGGCGGCGGCGGCGGACGG GAGG CCATCCGCCGCCGT-GCCGTTTGCG TCATTTGGCAGCTGC TERM 2971 3665082 - 3665122 + g 100 -22.6 -3.74224 | gap 1, overlap 3665076 CATGCACGTCGGAGA CGGCGGCGGCGGCGGACGG GAGG CCATCCGCCGCCGT-GCCG TTTGCGTCATTTGGC Rpic_3497 3667831 - 3665534 - | primosomal protein N' TERM 2972 3666972 - 3666957 - G 71 -7.5 -4.13014 | overlap 3666958 GGCACACTGGGAAAA CGCGC CGCAAT GCGCG CCTCCAGTTGTGGCG TERM 2973 3667579 - 3667616 + g 77 -5.3 -4.63218 | opp_overlap 3667548 3667547 ATTCGGCGTCGAGCG GCGGCACCCAGTCGAGC ACCC GCTCGACATCGCGCAGC TTTTCTTGCGGCACA TERM 2974 3668011 - 3668035 + r 71 -7.2 -4.16016 | GCGACCGTTTTCCGG GCTATCCACA TAGCC TGTGGATAAC TTTGTTGAAAAGTCG Rpic_3498 3669516 - 3668413 - | uroporphyrinogen decarboxylase TERM 2975 3669539 - 3669558 + r 78 -2.1 -5.06816 | GACTCTTTAGGAGGG CGCCATT GTAAGG GATGGTG TTTTTATTCCGACCT Rpic_3499 3670096 - 3669611 - | Cupin 2 conserved barrel domain protein Rpic_3500 3670311 - 3670658 + | glutathione-dependent formaldehyde-activating GFA Rpic_3501 3672468 - 3670666 - | methyl-accepting chemotaxis sensory transducer with Cache sensor TERM 2976 3673631 - 3673652 + G 70 -2.1 -4.67755 | gap 1, opp_overlap 3673632, overlap 3673632 3673632 TGGCAAGACCTGAAG AC-CGCCCGC TCG GCCGGCGAGG TTTTTGGCTACCTGT Rpic_3502 3672854 - 3673783 + | fatty acid hydroxylase Rpic_3503 3674666 - 3673785 - | transcriptional regulator, LysR family TERM 2977 3674723 - 3674737 + H 79 -12.8 -3.55548 | TACAGTGTCGTCACC GCCGCC GTT GGCGGC TTTCCCAACCTGTTC Rpic_3504 3674767 - 3675396 + | Glutathione S-transferase domain Rpic_3505 3675590 - 3676651 + | phosphate ABC transporter, periplasmic phosphate-binding protein Rpic_3506 3676824 - 3677027 + | hypothetical protein Rpic_3507 3677989 - 3677042 - | Alpha/beta hydrolase fold-3 domain protein TERM 2978 3677774 - 3677760 - G 73 -9.2 -3.83066 | opp_overlap 3677763, overlap 3677750 3677755 AACCACACCAGCAAA CGCGGC GTT GCCACG CCTTTCGGACGAAAG TERM 2979 3678089 - 3678142 + r 77 -3.9 -4.91852 | gap 3 CGAGCGGCAGCGGAA TGTCAG-T-CCGGGGCGCCGT-CGCG TTCGT CGCACAGGGCGCCTTGGGGGCTGACA TTTATTTTTGCTCGC Rpic_3508 3678608 - 3678144 - | CoA-binding domain protein Rpic_3509 3679771 - 3678629 - | hypothetical protein TERM 2980 3680157 - 3680183 + H 100 -7.9 -6.02914 | gap 1, overlap 3680158 GAAGGGATTTCCCGT CCGCGCGGCGCT CCCC GGC-CCGCGCGC TTTTTTTTGTGTGCG TERM 2981 3680158 - 3680182 + H 89 -11.4 -4.20122 | gap 1, overlap 3680157 AAGGGATTTCCCGTC CGCGCGGCGCT CCCC GGC-CCGCGCG CTTTTTTTTGTGTGC Rpic_3510 3680383 - 3682782 + | putative proline-rich transmembrane protein TERM 2982 3682817 - 3682835 + T 100 -12.4 -4.8048 | opp_overlap 3682817 TCAGGCAAAAAAAAA GCAGCCCT TTC GGGGCTGC TTTTTCCTCTGCGCC TERM 2983 3682835 - 3682817 - T 100 -11.7 -6.11644 | opp_overlap 3682817 TCAGGCAAAAAAAAA GCAGCCC TTTCG GGGCTGC TTTTTCCTCTGCGCC Rpic_3511 3683298 - 3682882 - | cyclic nucleotide-binding protein TERM 2984 3683351 - 3683321 - R 100 -14.8 -4.36914 | opp_overlap 3683350, overlap 3683322 3683323 3683347 CCTTTGCTCAGAAAA GCGGCTTCCTGAAG GGG CTTCAGGAAGCCAG TACTGGCCCCGGCTC TERM 2985 3683350 - 3683322 - R 90 -18.3 -3.21934 | overlap 3683321 3683323 3683347 CTTTGCTCAGAAAAG CGGCTTCCTGAAG GGG CTTCAGGAAGCCA GTACTGGCCCCGGCT TERM 2986 3683349 - 3683323 - R 88 -19.6 -2.52946 | overlap 3683322 3683321 3683347 TTTGCTCAGAAAAGC GGCTTCCTGAAG GGG CTTCAGGAAGCC AGTACTGGCCCCGGC Rpic_3512 3684799 - 3683390 - | ATP synthase F1, beta subunit Rpic_3513 3685711 - 3684836 - | ATP synthase F1, gamma subunit Rpic_3514 3687317 - 3685776 - | ATP synthase F1, alpha subunit Rpic_3515 3687927 - 3687391 - | ATP synthase F1, delta subunit Rpic_3516 3688400 - 3687930 - | ATP synthase F0, B subunit TERM 2987 3688487 - 3688436 - R 82 -14.4 -3.1994 | gap 1, opp_overlap 3688445, overlap 3688444 GAGACTACGGATCAA TGCACGAAGCGGCGAGGGT-CACGC GGT GCGTTCACCCTAGCCGCCTCCGGCA TCATGCAGACCGAAA TERM 2988 3688479 - 3688444 - R 78 -14 -3.22884 | gap 1, opp_overlap 3688445, overlap 3688436 GGATCAATGCACGAA GCGGCGAGGGT-CACGC GGT GCGTTCACCCTAGCCGC CTCCGGCATCATGCA Rpic_3517 3688773 - 3688507 - | ATP synthase F0, C subunit Rpic_3518 3689738 - 3688857 - | ATP synthase F0, A subunit Rpic_3519 3690518 - 3689970 - | hypothetical protein Rpic_3520 3691779 - 3690868 - | parB-like partition protein Rpic_3521 3692582 - 3691797 - | Cobyrinic acid ac-diamide synthase Rpic_3522 3693288 - 3692620 - | methyltransferase GidB TERM 2989 3692849 - 3692862 + g 76 -2.3 -4.87665 | overlap 3692838 3692850 ATGACGCCGTAGCCG GTGGC ATCG GCCAG TTTTTCTACATGGCC Rpic_3523 3695237 - 3693288 - | glucose inhibited division protein A TERM 2990 3694037 - 3694012 - G 75 -11.8 -3.49653 | opp_overlap 3694011 AGCACGCCCAGATAA GCCTGGTCGC GGCGCG GCGTCCAGGC ATCCTTGCCCTGCAC TERM 2991 3695972 - 3695941 - R 100 -19.6 -4.11394 | opp_overlap 3695941 3695947, overlap 3695947 ACTTGAGCCCCAAAA GCAAAACGCACGGC GCGA ACCGTGCGTTTTGC TTTGGGCAATGACGT TERM 2992 3695941 - 3695972 + r 100 -18.9 -3.55563 | opp_overlap 3695941 3695947, overlap 3695947 ACTTGAGCCCCAAAA GCAAAACGCACGG CGCGAA CCGTGCGTTTTGC TTTGGGCAATGACGT TERM 2993 3695966 - 3695947 - R 95 -11.4 -4.67038 | opp_overlap 3695941 3695947, overlap 3695941 GCCCCAAAAGCAAAA CGCACGGC GCGA ACCGTGCG TTTTGCTTTGGGCAA TERM 2994 3695947 - 3695966 + r 89 -10.7 -4.54727 | opp_overlap 3695947 3695941, overlap 3695941 GCCCCAAAAGCAAAA CGCACGG CGCGAA CCGTGCG TTTTGCTTTGGGCAA Rpic_3525 3697147 - 3695999 - | Extracellular ligand-binding receptor TERM 2995 3696951 - 3696969 + g 85 -7.4 -4.63218 | overlap 3696934 GTGTCAGACGCATCG TCGAGCAC GAT GTACTCGA TTTTCTTGCCGGCGA Rpic_3526 3698094 - 3697393 - | short-chain dehydrogenase/reductase SDR Rpic_3527 3698205 - 3698420 + | hypothetical protein Rpic_3528 3699329 - 3698433 - | transcriptional regulator, LysR family TERM 2996 3699218 - 3699174 - G 82 -15.8 -3.14132 | gap 1 CTGCGTTCGGAGGAA GAGCGACATGCCCA-GCGCCC GTTC GAGCGCATCGACATGTCGCCC CACGGTCGGCTGCGT Rpic_3529 3699435 - 3700391 + | NAD-dependent epimerase/dehydratase Rpic_3530 3700928 - 3700377 - | metal dependent phosphohydrolase TERM 2997 3700564 - 3700536 - G 72 -8.7 -4.07568 | overlap 3700538 CTCGTGTGTCGAAAA CACGCCGCCCTGC AGC GCCAGGCTGCGTA CCGAATCCGCTGATA Rpic_3531 3701097 - 3701474 + | Cupin 2 conserved barrel domain protein Rpic_3532 3702222 - 3701464 - | protein of unknown function DUF81 TERM 2998 3701839 - 3701789 - G 79 -11.1 -3.85817 | overlap 3701775 3701790 3701793 ACGCCGTCGTAGAAA CCGATGGC-GGCGCCAGCCAGCAAC GCC GTCGCCCGCTCGCGCCAGCCCT-GG AGGCTCGGGGCGTGA TERM 2999 3701998 - 3701983 - G 74 -4.6 -4.46775 | overlap 3701984 TAGCGAAAACATAAA CGCGGT GACC ACCGCC GGTGCCGTCGCGCCC Rpic_3533 3702683 - 3702246 - | hypothetical protein Rpic_3534 3702803 - 3703054 + | hypothetical protein TERM 3000 3703057 - 3703085 + T 100 -19.6 -4.33956 | opp_overlap 3703057 CCGCACAAACTAAAA GGCCCTGCCGGG GATCG CCTGGCAGGGCC TTTATCTATTTTGCA TERM 3001 3703085 - 3703057 - T 100 -17.4 -4.61873 | opp_overlap 3703057 CCGCACAAACTAAAA GGCCCTGCCGGG GATCG CCTGGCAGGGCC TTTATCTATTTTGCA Rpic_3535 3704292 - 3703288 - | inner-membrane translocator Rpic_3536 3705173 - 3704289 - | inner-membrane translocator TERM 3002 3705206 - 3705241 + r 72 -12.4 -3.09681 | opp_overlap 3705191 3705203 3705202, overlap 3705234 CACCAACACAACGTT GATGGCGCCGCCCTCC ACAC GGACGGCGGCGCCGGA TTGCCTACGCTTTTA Rpic_3537 3706462 - 3705254 - | putative substrate-binding periplasmic (PBP) ABC transporter protein Rpic_3538 3707278 - 3706538 - | ABC transporter related TERM 3003 3706661 - 3706634 - G 84 -8.4 -4.57353 | gap 1, opp_overlap 3706648, overlap 3706658 TTCCATCACATAAAA CCGGTCTGCCAGC GGC GC-GGCAAAGCGG AAGTTCTGCTCCACC TERM 3004 3707011 - 3706993 - G 73 -5.9 -4.38154 | ACAGGCTCGAGAAAA TGCCGCG CTCCT CGGGGCA GTACCCGATGCCGCA Rpic_3539 3708143 - 3707373 - | ABC transporter related Rpic_3540 3710023 - 3708389 - | glucose-methanol-choline oxidoreductase Rpic_3541 3710961 - 3710092 - | alpha/beta hydrolase fold Rpic_3542 3711495 - 3711037 - | transcriptional regulator, MerR family TERM 3005 3711373 - 3711319 - G 73 -9.8 -3.86346 | opp_overlap 3711329 3711337 CGACCTGTGGATAAA GCGCAGCACATGCAACGCCCGCGCGT CGT ACATGCGGTAGTTGCCTTCGGTGCGC GGACTCGGCGGCAGC Rpic_3543 3713714 - 3711492 - | heavy metal translocating P-type ATPase TERM 3006 3711927 - 3711957 + g 80 -13.8 -3.30124 | TTCGTCGATGCCGAG CGCGTGCGCCACGC TGT GCGCGGCGCCGGCG TTGTCCCCCGTCACG TERM 3007 3712817 - 3712848 + g 71 -13.6 -2.70932 | overlap 3712821 3712842 GCACGCCGTCGGTGG CGATGGCGCCTGCG GTCA CGCGGTCGCCTTCG TGCTTGGGCACGGGC Rpic_3544 3713860 - 3714072 + | Heavy metal transport/detoxification protein TERM 3008 3714095 - 3714115 + T 100 -14.7 -5.06414 | opp_overlap 3714095 GTTGGCAACAAAAAA GGCGTGCCG CTG TGGCACGCC TTTTTGTTGACGCGG TERM 3009 3714115 - 3714095 - T 100 -14 -5.4505 | opp_overlap 3714095 GTTGGCAACAAAAAA GGCGTGCC GCTGT GGCACGCC TTTTTGTTGACGCGG Rpic_3545 3714857 - 3714138 - | OmpW family protein TERM 3010 3714796 - 3714842 + g 88 -2.6 -5.24531 | overlap 3714822 3714823 CTGCCGGCAGCTTGT GCGTGCGCGGCGGTGGCGAGGA TCA TCCCGGCGGCAGCCGCCAGTGC TTTTTTATAGGCCAT TERM 3011 3714983 - 3714996 + r 70 -3.1 -4.66537 | TGCCTTGGCTAGAAC CCTTT TTCT AGAGG TTTTCTGTTACAAGC Rpic_3546 3716062 - 3715061 - | ornithine cyclodeaminase/mu-crystallin Rpic_3547 3716862 - 3716098 - | YhhN family protein Rpic_3548 3717431 - 3716955 - | transcriptional regulator, AsnC family Rpic_3549 3717570 - 3718514 + | phenylalanine-4-hydroxylase Rpic_3550 3718575 - 3718880 + | transcriptional coactivator/pterin dehydratase Rpic_3551 3719165 - 3718899 - | hypothetical protein Rpic_3552 3719214 - 3719924 + | two component transcriptional regulator, winged helix family Rpic_3553 3719934 - 3721607 + | integral membrane sensor signal transduction histidine kinase Rpic_3554 3722163 - 3721624 - | nuclear protein SET TERM 3012 3722450 - 3722468 + H 70 -3.8 -4.6902 | overlap 3722441 TTTTGCGTGCAACAA GTGCTTGA ACA TAAAGCGC TTTTTCCACTTATCC Rpic_3555 3722798 - 3723076 + | histone family protein DNA-binding protein Rpic_3556 3723221 - 3724168 + | hypothetical protein TERM 3013 3724253 - 3724232 - f 76 -10.8 -3.84514 | ATGTGAATTACTAAA GCGCCGGC AGCCCG ACCGGCGC ATGGCCCCTGCGATC Rpic_3557 3724281 - 3725105 + | class II aldolase/adducin family protein TERM 3014 3726037 - 3726079 + G 86 -14.3 -3.72576 | gap 3, overlap 3726039 ACGCCGCAGATTGAT GCCCTGCTGGGTCTGGTGCG CCTGCA CGC-CCAGACCC-GC-GGGC TTTACTGAAGAGAAC TERM 3015 3726039 - 3726078 + G 73 -14.4 -2.83403 | gap 2, overlap 3726037 GCCGCAGATTGATGC CCTGCTGGGTCTGGTGCG CCTGCA CGC-CCAGACCC-GCGGG CTTTACTGAAGAGAA Rpic_3558 3725110 - 3726087 + | 2-dehydropantoate 2-reductase TERM 3016 3726104 - 3726138 + T 77 -12 -3.6608 | opp_overlap 3726094 GAGAACGCCGCATCA CGGCGCGAGCGCAGGA TGC TTCAGCGCATGTGCCG TTTCAATCCACTGCT Rpic_3559 3726904 - 3726101 - | Sel1 domain protein repeat-containing protein Rpic_3560 3728972 - 3726918 - | 5'-Nucleotidase domain protein TERM 3017 3728091 - 3728118 + g 77 -8.5 -4.21194 | gap 2 CATGGCGTCGATGCC CGGCA-C-GGTGG ACAG CCACCAGCTGCCG TTTTCCATCGTCGGC TERM 3018 3728950 - 3728930 - G 75 -3.2 -4.79955 | gap 1, overlap 3728936 ACATCGACAAGAAAA CAGCAAGCG GCAA CGCC-GCCG AACACAATGGTCGGA TERM 3019 3728948 - 3728936 - G 71 -10.5 -3.6201 | overlap 3728930 ACAAGAAAACAGCAA GCGGC AAC GCCGC CGAACACAATGGTCG TERM 3020 3729357 - 3729329 - g 72 -6.7 -4.30987 | opp_overlap 3729348 ATGTCCCAGAAGAAA GCGCCGCTG TTCGAGATCCG CAGCGGCAC CGTCGATGCCCTGCT TERM 3021 3729427 - 3729445 + G 75 -3 -4.82901 | opp_overlap 3729420 CGAACTCACGCGACG CTTTGCCG ACA CGCCGGAG TTTTTCTCCAACGAC Rpic_3561 3729314 - 3730108 + | septum site-determining protein MinC Rpic_3562 3730153 - 3730974 + | septum site-determining protein MinD Rpic_3563 3730989 - 3731243 + | cell division topological specificity factor MinE Rpic_3564 3732483 - 3731251 - | DNA binding domain protein, excisionase family Rpic_3565 3732642 - 3734039 + | L-carnitine dehydratase/bile acid-inducible protein F Rpic_3566 3734100 - 3734957 + | protein of unknown function DUF519 Rpic_3567 3735098 - 3736000 + | protein of unknown function DUF344 TERM 3022 3736031 - 3736051 + T 95 -11.8 -4.67353 | opp_overlap 3736031 CGTCAGCGAAAGAAA GGGCGGCC TGCGC GGTCGCCC TTTTTCCGTCAATGC TERM 3023 3736051 - 3736031 - T 84 -9.6 -4.46112 | opp_overlap 3736031 CGTCAGCGAAAGAAA GGGCGGCC TGCGC GGTCGCCC TTTTTCCGTCAATGC TERM 3024 3736118 - 3736159 + T 70 -4.4 -4.43879 | gap 3, opp_overlap 3736088 3736085 GTGCAAGCCGCCTGC CTGCGCG-ATCCATGCG-GGC AAC GCCACCCA-GGCTGCGCGCGG TTTTCATTGCGTCCT TERM 3025 3736265 - 3736255 - T 71 -8.2 -4.13767 | opp_overlap 3736259 3736262 GGGCGGATCTCAAAA CCCG GTA CGGG CGCCTCATGATCGCC Rpic_3568 3736517 - 3736230 - | acylphosphatase TERM 3026 3737264 - 3737297 + G 74 -11.1 -3.56325 | gap 1, overlap 3737288 GTGCGCGGCCATCTT CGCCATCTT-CACGTC GCA GGCGTGGAACATGGCG TTCTCGTTGTACCAA Rpic_3569 3736794 - 3738578 + | binding-protein-dependent transport systems inner membrane component Rpic_3570 3738655 - 3740028 + | ABC transporter related TERM 3027 3740054 - 3740072 + F 100 -11.7 -4.77438 | opp_overlap 3740054 CCGCTGACGTCAGAA GAGCCGC TCGAT GCGGCTC TTTTTCATAGTCGCT TERM 3028 3740072 - 3740054 - f 72 -11.7 -3.32844 | opp_overlap 3740054 CCGCTGACGTCAGAA GAGCCGC TCGAT GCGGCTC TTTTTCATAGTCGCT Rpic_3571 3740220 - 3741182 + | Alginate lyase Rpic_3572 3741260 - 3742309 + | dienelactone hydrolase Rpic_3573 3742364 - 3743326 + | putative chromate resistance signal peptide protein TERM 3029 3743959 - 3743995 + G 74 -15.2 -2.62933 | gap 2, opp_overlap 3743934, overlap 3743953 GCCGCCCCGGTTGCC GCGGCCAG-CG-GCATGC TGG GCACGCTCGACTGGCCGC TGCTCTCGCAACTTG TERM 3030 3744204 - 3744237 + G 73 -9.5 -3.90318 | gap 1 CTACCTGGTGGCGGG CCTGCCCGGCGCATGC GTG GC-TGCGCTTGGCACG TTTCTGCCCTGCTAC Rpic_3574 3743353 - 3744525 + | chromate transporter, chromate ion transporter (CHR) family Rpic_3575 3744853 - 3744548 - | hypothetical protein Rpic_3576 3745086 - 3745544 + | protein of unknown function DUF1311 Rpic_3577 3746030 - 3746353 + | transcriptional regulator, ArsR family Rpic_3578 3746366 - 3746854 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpic_3579 3746870 - 3747364 + | protein tyrosine phosphatase Rpic_3580 3747370 - 3748077 + | major intrinsic protein Rpic_3581 3748251 - 3749159 + | alpha/beta hydrolase fold TERM 3031 3749386 - 3749403 + F 71 -6.9 -4.15703 | ATCCACTTTTTCATC GCCTACG CTGT CGTCGGC TTGTTGTTTGTGGGC Rpic_3582 3749590 - 3749919 + | hypothetical protein Rpic_3583 3750343 - 3749975 - | hypothetical protein TERM 3032 3750900 - 3750866 - H 86 -13.6 -3.53444 | CCATGGCGTTCCAAA CCGCATCGATGGAGTT CGG AACCCCGTCGACGCAG GCAATTTGTGAAATG Rpic_3584 3751011 - 3751484 + | hypothetical protein TERM 3033 3751522 - 3751506 - f 100 -9.3 -5.02476 | opp_overlap 3751507, overlap 3751507 ACAGTTGCCAAAAAA GCCGCCC AAT GGGCGGT TTCTTTGTTCGGGGT TERM 3034 3751521 - 3751507 - f 82 -12.8 -3.60762 | opp_overlap 3751507, overlap 3751506 CAGTTGCCAAAAAAG CCGCCC AAT GGGCGG TTTCTTTGTTCGGGG TERM 3035 3751507 - 3751521 + F 100 -12.8 -4.67607 | opp_overlap 3751507 3751506 CAGTTGCCAAAAAAG CCGCCC AAT GGGCGG TTTCTTTGTTCGGGG TERM 3036 3751647 - 3751667 + G 74 -4.7 -4.58395 | AAAAAGCGCTCTACG TCGTATTTG ACA CTAATGCGA TTTTTACGAAATCCG TERM 3037 3752103 - 3752079 - g 78 -12.9 -3.55815 | AAACATTCCTTCAAA TTGCGTCCAGT TTG ACTGGACGCGA TACGGCACTCCTCAT TERM 3038 3752346 - 3752317 - g 78 -4.4 -4.82901 | gap 1 TCTTTGGTATAAAAA GGATATTCCGAAT CTCAT ATTCGGGA-ATCC GGCAATTTCGGATAG Rpic_3585 3751616 - 3752845 + | hypothetical protein Rpic_3586 3753181 - 3754281 + | RelA/SpoT domain protein TERM 3039 3754671 - 3754690 + G 74 -10.7 -3.79874 | overlap 3754672 CAAGGTTTCTTTGCG CGCCACC GTCATG GGTGGCG TTGTCTTCTGTGCCG Rpic_3587 3754648 - 3755454 + | hypothetical protein Rpic_3588 3755486 - 3755611 + | conserved hypothetical signal peptide protein Rpic_3589 3755717 - 3757489 + | potassium-transporting ATPase, A subunit TERM 3040 3759366 - 3759340 - g 72 -13 -3.04501 | overlap 3759330 AGGAAGCCGGCAACA TGGTCGACCTGG ATT CCAGCCCGACCA AGCTGATCCAGATTG Rpic_3590 3757530 - 3759746 + | K+-transporting ATPase, B subunit Rpic_3591 3759762 - 3760385 + | potassium-transporting ATPase, C subunit TERM 3041 3760874 - 3760837 - f 75 -2.8 -5.00884 | gap 2 AGCGGGCGGAAAAAA GACGGG-AAA-CTGTCTG AGCG CAGCGAGTTTTTCCCGTC TCCGCCCGCTTACGA TERM 3042 3762512 - 3762523 + G 87 -5.8 -4.99134 | GTTCGATTTCTTCTT CGTG CCGC CACG TTTTTCCTTTGCCGT TERM 3043 3762755 - 3762767 + G 74 -4.7 -4.47707 | overlap 3762756 CAACGCGACGTTTGG CGGGC GCT GCGCG TTCTTTTTCGTCGGG TERM 3044 3762756 - 3762770 + G 82 -5.6 -4.72986 | overlap 3762755 AACGCGACGTTTGGC GGGCGC TGC GCGTTC TTTTTCGTCGGGCTC Rpic_3592 3761031 - 3763847 + | osmosensitive K+ channel signal transduction histidine kinase Rpic_3593 3763985 - 3764791 + | lipoprotein, YaeC family TERM 3045 3764842 - 3764888 + F 76 -5.7 -4.65916 | gap 1, opp_overlap 3764843, overlap 3764843 3764879 3764880 CTGACCCGAGATTGA AGC-GTGGCATGCCGGGAGCCT GTCC AGTCTTCCGGTGCGCCGCCGCG TTTTGTTGCGCTGCG TERM 3046 3765058 - 3765080 + F 100 -19.2 -5.63517 | CCTTGGTGGATTGTG GCCCGAGCAC TTG GTGCTCGGGC TTTTTTCTTTGGCGC TERM 3047 3765461 - 3765486 + F 95 -6.9 -5.40072 | gap 1, overlap 3765464 GCACTCCCCCCCTTT TGA-GCCCGC CCCTGTT GCGGGCTTCA TTTTTTTCGGGCACG TERM 3048 3765464 - 3765482 + F 76 -8.8 -4.03885 | overlap 3765461 CTCCCCCCCTTTTGA GCCCGC CCCTGTT GCGGGC TTCATTTTTTTCGGG TERM 3049 3765565 - 3765600 + F 100 -22 -5.00616 | opp_overlap 3765586, overlap 3765569 GTTGGGGGAATCTCT CAAGGCCCGCGCAGTT GAAA AGCTGCGCGGGCTTTG TTTTTTCCGGCGCCG TERM 3050 3765569 - 3765596 + F 100 -19.2 -5.04249 | opp_overlap 3765586, overlap 3765565 GGGGAATCTCTCAAG GCCCGCGCAGTT GAAA AGCTGCGCGGGC TTTGTTTTTTCCGGC TERM 3051 3766159 - 3766184 + G 80 -8.3 -4.36914 | gap 1 AACGGGACCGGGCGC CTGCCGCAA-CC GCC GGCTTGCCGCAG TTTTCTGACCACGAA TERM 3052 3766859 - 3766839 - g 83 -14.7 -3.27525 | opp_overlap 3766838 3766844, overlap 3766834 GGGGTGGAAACCGAA GCGCAGCGC CAG ACGCTGCGC GCTTTGGGCTGTGCG Rpic_3594 3765735 - 3766949 + | response regulator receiver modulated diguanylate phosphodiesterase Rpic_3595 3767192 - 3767839 + | two component transcriptional regulator, LuxR family Rpic_3596 3768590 - 3767850 - | major intrinsic protein TERM 3053 3768442 - 3768430 - G 74 -10.5 -3.73953 | AGCAGCGCCAGCAAA CCGGC GCC GCCGG CCAGCGATTGCGCCA TERM 3054 3768730 - 3768702 - R 76 -14.5 -2.56596 | overlap 3768698 CGGCCGATCAATGCA CACGGGCGCGC TTGTGTC GCGCGCCCGAG TATCGAATGGTGGAA Rpic_3597 3770230 - 3768764 - | major facilitator superfamily MFS_1 Rpic_3598 3770355 - 3771200 + | transcriptional regulator, XRE family Rpic_3599 3771804 - 3771205 - | isochorismatase hydrolase Rpic_3600 3772262 - 3771828 - | thioesterase superfamily protein Rpic_3601 3772558 - 3773685 + | porin Gram-negative type Rpic_3602 3774753 - 3773704 - | conserved hypothetical signal peptide protein Rpic_3603 3774901 - 3775581 + | two component transcriptional regulator, winged helix family TERM 3055 3775610 - 3775586 - g 80 -14.9 -3.14931 | opp_overlap 3775604 CGCAGTCCTGATCAA GCGCCGGCGCA GTC CGCCCCGGCGC GTGCCCGCAGCCTGC Rpic_3604 3775559 - 3777010 + | histidine kinase Rpic_3605 3777172 - 3777041 - | hypothetical protein Rpic_3606 3777774 - 3777235 - | putative secreted protein TERM 3056 3777744 - 3777727 - G 73 -9.1 -3.86897 | overlap 3777730 3777731 TGCACCTGCCAGAAA CAACGCG GCAA CGCGCTG CACTCCAATAGGCTG Rpic_3607 3778178 - 3777801 - | hypothetical protein Rpic_3608 3778838 - 3778359 - | transcriptional regulator, BadM/Rrf2 family TERM 3057 3779024 - 3779011 - H 89 -5.2 -5.28176 | opp_overlap 3779016 GCCATCCAGAAAAAA GGCG TGACGG CGCC CCCCGTCTTATTTGT Rpic_3609 3779070 - 3780275 + | Oxidoreductase FAD-binding domain protein Rpic_3610 3780296 - 3781510 + | NnrS family protein Rpic_3611 3781584 - 3783041 + | transcriptional regulator, GntR family with aminotransferase domain Rpic_3612 3783121 - 3783558 + | alkylhydroperoxidase like protein, AhpD family Rpic_3613 3783607 - 3784038 + | hypothetical protein TERM 3058 3784061 - 3784077 + T 70 -10.1 -3.53012 | GGCCTTTTCCGCGCG CGGTGCT TGC GGCACCG TTTGCGGACCGGACG Rpic_3614 3785362 - 3784043 - | major facilitator superfamily MFS_1 Rpic_3615 3786422 - 3785538 - | transcriptional regulator, LysR family TERM 3059 3786006 - 3785981 - G 70 -11.1 -3.31144 | GCGGCAGCGCCACAA GGCCAATGTCG AGCG CGCCATCGGCC AGACCCGCCAGCGTT Rpic_3616 3786538 - 3787470 + | N-acetyl-gamma-glutamyl-phosphate reductase Rpic_3617 3787609 - 3788445 + | allantoin catabolism protein TERM 3060 3788493 - 3788469 - f 100 -9.9 -4.82901 | opp_overlap 3788469 TGTGTCCGATAAAAA GCCCGCCGG TGGTTTG CCGTCGGGC TTTTTTCATGGCCGT TERM 3061 3788469 - 3788493 + F 100 -11.3 -5.14965 | opp_overlap 3788469 TGTGTCCGATAAAAA GCCCGCCGGTG GTT TGCCGTCGGGC TTTTTTCATGGCCGT Rpic_3618 3788563 - 3788961 + | ISPsy11, transposase OrfA TERM 3062 3789779 - 3789757 - g 100 -19.2 -4.78848 | CCTTGAAATACAAAA CGCCCGATGC GGT GCATCGGGCG CTCGGAGACTGAGCA Rpic_3619 3788964 - 3789791 + | Integrase catalytic region Rpic_3620 3790455 - 3789850 - | Trans-aconitate 2-methyltransferase Rpic_3621 3790561 - 3790698 + | transcriptional regulator, LysR family Rpic_3622 3791062 - 3790754 - | hypothetical protein TERM 3063 3791087 - 3791103 + H 72 -13.7 -2.55213 | opp_overlap 3791085, overlap 3791084 CTCGTACAGTGAACG TGCCGCC GGA GGCGGCA TCCATTGGATCGCTG TERM 3064 3791239 - 3791195 - H 88 -2.8 -5.53991 | gap 1, overlap 3791197 CATCGACGAAAAAAA TTGCCGCACCAGCCTGTACCT GCAG ATACGCAGGCCA-CGCGGCAA TGGATGCAGCCTCGC Rpic_3623 3791243 - 3791620 + | hypothetical protein Rpic_3624 3791772 - 3792635 + | protein of unknown function DUF6 transmembrane Rpic_3625 3793973 - 3792654 - | integral membrane sensor signal transduction histidine kinase Rpic_3626 3794635 - 3793970 - | two component transcriptional regulator, winged helix family Rpic_3627 3795172 - 3794783 - | hypothetical protein Rpic_3628 3795712 - 3795275 - | UspA domain protein TERM 3065 3795732 - 3795758 + H 74 -12.3 -3.24708 | gap 1, overlap 3795731 3795728 3795734 3795736 CCTCCTTGCCGTGTG TGCC-GCCGCGC CCGT GCGCGGCTGGTA TCTGTTTCCACGGTA TERM 3066 3795734 - 3795756 + H 74 -12.7 -3.18571 | gap 1, overlap 3795732 3795731 3795728 3795736 TCCTTGCCGTGTGTG CC-GCCGCGC CCGT GCGCGGCTGG TATCTGTTTCCACGG TERM 3067 3795736 - 3795753 + H 73 -14.1 -2.78672 | overlap 3795734 3795732 3795731 3795728 CTTGCCGTGTGTGCC GCCGCGC CCGT GCGCGGC TGGTATCTGTTTCCA Rpic_3629 3795895 - 3796338 + | thioesterase superfamily protein Rpic_3630 3796448 - 3796669 + | hypothetical protein TERM 3068 3796700 - 3796717 + T 100 -14.1 -5.48514 | AAAGGATTTGGGGGA CCCCGCC GGTT GGCGGGG TTTTTGTTTATTGGT Rpic_3631 3797333 - 3796734 - | hypothetical protein Rpic_3632 3797663 - 3797358 - | putative transmembrane protein Rpic_3633 3798096 - 3797692 - | hypothetical protein Rpic_3634 3798377 - 3798093 - | hypothetical protein TERM 3069 3798569 - 3798587 + H 75 -3 -4.9792 | overlap 3798562 3798570 TTTTCCCAGACGGAC AGCCGC CTTTCGC GCGGCA TTTTTGTGTCCGGTG Rpic_3635 3798853 - 3799137 + | hypothetical protein Rpic_3636 3800085 - 3799198 - | transcriptional regulator, LysR family TERM 3070 3799805 - 3799767 - G 71 -8.1 -4.08394 | gap 2, overlap 3799791 AGATCGGCGGGAAAA CGGTGCCGACCAGGTCGTA AGG CACGCCCAGG-CG-CACCG GCCCCTGCAGCGGGC TERM 3071 3801240 - 3801223 - g 72 -8.3 -4.03234 | opp_overlap 3801232 CGGGCCGCACAGAAA CGCTGCG CGCG CGCCGCG AGGTGATCGTCTCAT TERM 3072 3801232 - 3801263 + G 71 -10.8 -3.64703 | gap 1, opp_overlap 3801223 CAGAAACGCTGCGCG CGCGCCGCGAGGTGA TCG TCTCATCG-GGCGCG TTTGGGTCGCCGCAG Rpic_3637 3800439 - 3802169 + | glucose-methanol-choline oxidoreductase Rpic_3638 3803361 - 3802453 - | extracellular solute-binding protein family 3 Rpic_3639 3805346 - 3803685 - | acyl-CoA dehydrogenase domain protein TERM 3073 3805001 - 3804987 - G 78 -12.8 -3.44848 | overlap 3804985 CGCCTGCATGAAATA GCCCGC GGT GCGGGC GGCCCATGCGCCGGG TERM 3074 3805679 - 3805669 - H 88 -3.2 -5.59564 | ATAAAGGGAAAAAAA GCCT AAA AAGC CTTGTGTGGTAACGG TERM 3075 3805957 - 3805940 - H 77 -4 -4.96848 | CGCTCGAGAGAAAAA GCTCGC AAGACA GCGGGC CTGAACGAGGGAGAA TERM 3076 3806007 - 3805993 - g 74 -4.9 -4.52589 | CGTGCTCACACAAAA CAGCC CGTTT GGCCG GCGTGGGGTTGCCGG Rpic_3640 3805973 - 3810994 + | outer membrane autotransporter barrel domain protein TERM 3077 3811023 - 3811040 + T 100 -12.7 -5.14563 | opp_overlap 3811023 AAGCGCTAACAAAAA GCCAGCC TTCG GGCTGGC TTTTTTGCTGGGCGA TERM 3078 3811040 - 3811023 - T 100 -12.7 -5.08088 | opp_overlap 3811023 AAGCGCTAACAAAAA GCCAGCC TTCG GGCTGGC TTTTTTGCTGGGCGA Rpic_3641 3812228 - 3811068 - | 2-nitropropane dioxygenase NPD TERM 3079 3812337 - 3812357 + H 73 -10.3 -3.60627 | opp_overlap 3812316 3812317, overlap 3812331 3812335 CCGCGCCGGTGCGCG CCGCCGCAC ATT GCGTGGCGG TTTGGACTGAAATGA TERM 3080 3812672 - 3812662 - g 74 -2.4 -4.74103 | GCCCCAAGCCAAAAA CGCC CCC GCCG CATCGTTCGACTCGC TERM 3081 3813445 - 3813409 - g 81 -9.3 -4.20696 | opp_overlap 3813408 CGAGGAAGTGGAAAA GATGGTGTGGGCGATCC GCT GGGGCGCCGACACGATC ATGGATTTGTCCACC Rpic_3642 3812645 - 3814552 + | thiamine biosynthesis protein ThiC Rpic_3643 3814565 - 3815710 + | FAD dependent oxidoreductase Rpic_3644 3815707 - 3815922 + | thiamine biosynthesis protein ThiS Rpic_3645 3815932 - 3816759 + | thiazole biosynthesis family protein TERM 3082 3816927 - 3816964 + G 70 -11.1 -3.42482 | overlap 3816926 3816928 CTGCTGACGACCGAT ACGGCGCAAGCCGAACG TGCT CGCTCTGCTGGCGCCGC TGTTGTGTTGACTGC TERM 3083 3816928 - 3816963 + G 74 -14.6 -2.65007 | overlap 3816927 3816926 TGCTGACGACCGATA CGGCGCAAGCCGAACG TGCT CGCTCTGCTGGCGCCG CTGTTGTGTTGACTG Rpic_3646 3816756 - 3817910 + | thiamine monophosphate synthase TERM 3084 3817931 - 3817955 + F 75 -7.7 -4.27617 | GTCCGCCGCACCTCT GTGCGCCTGCG CCG CGCACCCGCGC TTTTGCTGACCTATC TERM 3085 3817981 - 3818006 + F 90 -14.7 -3.53091 | CTATCCTGTTCGTGC GCCGCTGCGGT TGTC GTCGCAGCGGC TTTCCAACACACGCT Rpic_3647 3818036 - 3818515 + | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 3086 3818519 - 3818575 + F 86 -15.3 -3.33492 | opp_overlap 3818531 3818538, overlap 3818527 3818538 GCGTCGGCCTGATAT CGGCGGTGCAAAGAAAAAAGCGCGG ACGAGAG CCGCGCTTTTTTTTTTGTTCCTGCG TTCTCGACTAACTGC TERM 3087 3818527 - 3818567 + F 90 -17.9 -3.23711 | opp_overlap 3818531 3818538, overlap 3818519 3818538 CTGATATCGGCGGTG CAAAGAAAAAAGCGCGG ACGAGAG CCGCGCTTTTTTTTTTG TTCCTGCGTTCTCGA TERM 3088 3818563 - 3818531 - f 70 -10.7 -3.53224 | opp_overlap 3818527 3818519 3818538, overlap 3818538 TATCGGCGGTGCAAA GAAAAAAGCGCGG ACGAGAG CCGCGCTTTTTTT TTTGTTCCTGCGTTC TERM 3089 3818556 - 3818538 - f 100 -8.8 -5.63517 | opp_overlap 3818527 3818519 3818538, overlap 3818531 GGTGCAAAGAAAAAA GCGCGG ACGAGAG CCGCGC TTTTTTTTTTGTTCC TERM 3090 3818538 - 3818556 + F 100 -8.8 -6.59152 | opp_overlap 3818538 3818531, overlap 3818527 3818519 GGTGCAAAGAAAAAA GCGCGG ACGAGAG CCGCGC TTTTTTTTTTGTTCC TERM 3091 3819240 - 3819230 - g 100 -8.2 -4.91109 | opp_overlap 3819236 GCTCGACGAGAAAAA CGCC TGG GGCG GCGGTCCGTTCGTGA TERM 3092 3820686 - 3820637 - g 70 -11.4 -3.36492 | GCGCGAACTCTACAA CGACGACGGCTTCCTCAGAAAG GGCGTG CTCTTTGCGGAAGACGACGTCG AGAAGATGAACGCCG Rpic_3648 3818739 - 3821156 + | hypothetical protein Rpic_3649 3821265 - 3822764 + | hypothetical protein Rpic_3650 3823142 - 3822783 - | putative lipoprotein transmembrane Rpic_3651 3824068 - 3823157 - | phosphomethylpyrimidine kinase TERM 3093 3824182 - 3824197 + r 73 -4.6 -4.65895 | AGCGCGAGGCTCAGA CCGTGG AACG CGACGG TTTTTGGCTCGAACG Rpic_3652 3825028 - 3824333 - | putative signal peptide protein TERM 3094 3825084 - 3825058 - R 100 -15.2 -5.37593 | GCTGAAACGAAAAAA GCGCATGCCG ATTGCCA CGGCATGCGC ATCAATGGAAACGCA Rpic_3653 3826498 - 3825104 - | Alkaline phosphatase Rpic_3654 3827972 - 3826515 - | Alkaline phosphatase TERM 3095 3827906 - 3827946 + g 80 -16.2 -2.80784 | gap 2, overlap 3827904 ATGTGCCGTCGCTGC CGCACGCTGCCATGGCGAGC GCG GCT-GCCACGGCGGCG-GCG TACTTCGTAAGTTTG Rpic_3656 3829178 - 3830602 + | adenosylhomocysteinase Rpic_3657 3830657 - 3831001 + | membrane protein of unknown function TERM 3096 3831090 - 3831116 + G 79 -6.4 -4.46112 | opp_overlap 3831074 3831087 3831055, overlap 3831074 3831106 CTGCGCAACACACGC GCGCAGCTTTCG CCG CTCAAGCCGCGC TTTATTTCCGTGACG TERM 3097 3831732 - 3831782 + G 71 -7.4 -4.09685 | gap 1, overlap 3831724 TTCGGTCTGGACGTG GTGACGGCCATGTGTGACCGCCT GCTGCA AGGCGG-CGCGCCGGGCCTGCAC TTTTACACGCTCAAC Rpic_3658 3831012 - 3831842 + | 5,10-methylenetetrahydrofolate reductase TERM 3098 3832316 - 3832296 - g 93 -14 -3.97444 | AGGCAACAAAGACAA CGGCGACC AAGAA GGTCGCCG AAAAAAAGACAGCCA Rpic_3659 3831872 - 3832339 + | TfoX domain protein Rpic_3660 3832958 - 3832344 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding TERM 3099 3832435 - 3832454 + g 75 -3.4 -4.72007 | overlap 3832439 TGCTGCAGGATCTTG CCTGCGGT GGGT ACGGCCGG TTTGTTTTCCTGCGC Rpic_3661 3833581 - 3832976 - | 5-formyltetrahydrofolate cyclo-ligase TERM 3100 3835493 - 3835463 - g 79 -6 -4.62783 | opp_overlap 3835463, overlap 3835464 CACGTATGTGAAAAA CGTGCTGTCGAACG CGA CGTACTACAGCGCA TTGCTGACCGGTCGC Rpic_3662 3833625 - 3835577 + | Lytic transglycosylase catalytic TERM 3101 3835608 - 3835627 + F 89 -10.7 -4.72272 | opp_overlap 3835608 CCGGTTGTCACCCAA TGCCCGC CGCAAC GCGGGCA TTTTTCATGGGCGCG Rpic_3663 3835761 - 3836765 + | NADH dehydrogenase TERM 3102 3836783 - 3836829 + F 71 -7.3 -4.26881 | opp_overlap 3836779, overlap 3836749 3836784 GCTACGGAAACGCGG AGGATTCGCCCTGTTTGTGAA TCCGC TTCACAACCGTGGCCAATCCG TTTCATTTTGTGGCG Rpic_3664 3836990 - 3837679 + | Glutathione S-transferase domain Rpic_3665 3837676 - 3838962 + | polynucleotide adenylyltransferase/metal dependent phosphohydrolase Rpic_3666 3839898 - 3838993 - | extracellular solute-binding protein family 3 TERM 3103 3839763 - 3839746 - G 77 -4.9 -4.63218 | gap 1, overlap 3839748 GTCGCGGTAAGAAAA CG-GAATC GAC GATTCGCG CACGCCGATCAGGAT Rpic_3667 3840818 - 3839982 - | protein of unknown function DUF849 TERM 3104 3840450 - 3840436 - G 84 -8.5 -4.49958 | AGCTCACCAAAGAAA CGCGC GGCTT GCGCG TCGTGCGCGGCATCC Rpic_3668 3842167 - 3840812 - | aminotransferase class-III TERM 3105 3841145 - 3841124 - G 72 -10.9 -3.53012 | gap 1, opp_overlap 3841122, overlap 3841125 GGCGTGGTCGGCAAA GCGTGCA-CG CAG CGCTGCACGC AGTTGCTCGCCACGC TERM 3106 3842048 - 3842035 - G 73 -9.5 -3.88498 | GGCCGAGACACGAAA CGGCG GCAC CGCCG CAGGCGTCGAGATAG Rpic_3669 3843092 - 3842184 - | transcriptional regulator, RpiR family TERM 3107 3842691 - 3842679 - G 84 -6.9 -4.72272 | overlap 3842681 3842682 CGCGCCCAGCAAAAA GACGC GGC GCGCC CTGCAGAGGGCGGCG TERM 3108 3843216 - 3843191 - R 95 -7.5 -5.42198 | gap 1 GCGCAAAAAATAAAA CGGCCGCATCTC AAG GCG-TACGGCCG TGGCGGGCAAACAAA TERM 3109 3843251 - 3843234 - R 100 -12.7 -5.27335 | opp_overlap 3843234 GCGGGCAAACAAAAA CGGAGGC CGAA GCCTCCG TTGTGCGTGTGATGC TERM 3110 3843234 - 3843251 + r 76 -12.7 -3.40299 | opp_overlap 3843234 GCGGGCAAACAAAAA CGGAGGC CGAA GCCTCCG TTGTGCGTGTGATGC Rpic_3670 3843581 - 3843276 - | putative transmembrane protein TERM 3111 3843803 - 3843819 + r 100 -8 -5.5353 | opp_overlap 3843803, overlap 3843796 GCAGGAATGAAAAAA GACCTC GCGAG GAGGTC TTTTTTGTTGCTCTG TERM 3112 3843819 - 3843803 - R 100 -8 -5.30155 | opp_overlap 3843803 3843796 GCAGGAATGAAAAAA GACCTC GCGAG GAGGTC TTTTTTGTTGCTCTG Rpic_3671 3844721 - 3844011 - | two component transcriptional regulator, Fis family TERM 3113 3844339 - 3844350 + g 75 -7.2 -4.45544 | GCGGCAGCCGGTGTG GCCG AGCG CGGC TTTTCCTTGCTGCGC TERM 3114 3844585 - 3844623 + g 73 -12.2 -3.30159 | overlap 3844586 AGCAGGACGAGGTCG GGCGTTGCGTTCGCGCGG TAT TCGCGCGCGCGCTGCGCG TTCTCGGCGACTTCA TERM 3115 3844586 - 3844622 + g 77 -15.7 -2.57881 | overlap 3844585 GCAGGACGAGGTCGG GCGTTGCGTTCGCGCGG TAT TCGCGCGCGCGCTGCGC GTTCTCGGCGACTTC Rpic_3672 3847229 - 3844758 - | multi-sensor signal transduction histidine kinase TERM 3116 3846509 - 3846547 + g 100 -21.7 -3.71873 | opp_overlap 3846484 GGCCACTGTTGCGTG CCGATGGCGCCGCGGCG GCCGG CGCGGAGGCGCCATCGG TTTCGGTATCGCTGC Rpic_3673 3847996 - 3847226 - | putative proline rich signal peptide protein Rpic_3674 3849341 - 3848010 - | sun protein TERM 3117 3849401 - 3849370 - R 100 -12.3 -4.3898 | gap 1, overlap 3849375 ATCAGGCGGACAAAA TGCAACGAGCCCGC GATGG GCGGGCTCGT-GCG GACTGCGGAAGTATA TERM 3118 3849397 - 3849375 - R 89 -16.3 -3.41587 | overlap 3849370 GCGGACAAAATGCAA CGAGCCCGC GATGG GCGGGCTCG TGCGGACTGCGGAAG Rpic_3675 3850305 - 3849445 - | peptidase M48 Ste24p Rpic_3676 3851082 - 3850426 - | Lysine exporter protein (LYSE/YGGA) Rpic_3677 3852097 - 3851114 - | methionyl-tRNA formyltransferase TERM 3119 3851178 - 3851198 + g 72 -8.2 -4.19953 | AGGAATTCGCGTGCG GGCAGGCG CTTGC CGCCTGGC TTTTGCAGTTGCGTC Rpic_3678 3854179 - 3852155 - | putative transmembrane protein TERM 3120 3853342 - 3853329 - G 90 -8.1 -4.8667 | GATAGGCCATAAAAA CGCCA TGCC TGGCG GTTGCGGAAATCCGG Rpic_3679 3854705 - 3854190 - | peptide deformylase TERM 3121 3855015 - 3855042 + G 73 -6.2 -4.431 | gap 1 CAGCCTTACGTTTGC GCCCTGTCGGCGG TTG CCG-CGGTAGCGC TTTTCTGCATGGGTG TERM 3122 3855514 - 3855531 + G 72 -8.3 -4.03234 | CGGCGCGCATCTTCT CGCTGCC CGAA GGCCGCG TTTATCTGGGCAAGG TERM 3123 3855588 - 3855554 - g 100 -19.3 -4.14392 | gap 1 GGGCAAGGGCGAAAA CGCCTACGCCC-GCGG CCTG CCGCAGGGCGAAGGCG GCCAGGCCGGTAGCG Rpic_3680 3854958 - 3856145 + | Peptidoglycan-binding LysM Rpic_3681 3856171 - 3857379 + | DNA protecting protein DprA TERM 3124 3857421 - 3857433 + F 83 -4.7 -5.14965 | overlap 3857416 3857415 TTCGTCACCCCGCTG GTCGC TCA GCGCC TTTTTTCATGCCACT Rpic_3682 3857441 - 3857821 + | Thioredoxin domain TERM 3125 3859047 - 3859037 - g 72 -6.8 -4.25104 | GGCGCTGTATGAAAA GCAC AAG GTGC TGACCTATCCGCGTA TERM 3126 3860606 - 3860587 - g 76 -5.6 -4.56597 | overlap 3860572 3860588 CGGCCGCGGCAAAAA CGCCCGCT GCCA AGAAGGCG CCGGCCAAGACCGCG Rpic_3683 3858075 - 3860705 + | DNA topoisomerase III TERM 3127 3860723 - 3860689 - T 71 -9.3 -3.80014 | AGACCGACGAGGAAA GCACCAGCGAAAC TTGATTGCG GTTTCGCAGGCGC CCACGCAAACGGGAG TERM 3128 3860733 - 3860753 + T 100 -16.9 -5.08255 | opp_overlap 3860733 AGGCGCCCACGCAAA CGGGAGGAC ACT GTCCTCCCG TTTTGTTTTGGCAAT TERM 3129 3860753 - 3860733 - T 100 -16.9 -3.64822 | opp_overlap 3860733 AGGCGCCCACGCAAA CGGGAGGAC ACT GTCCTCCCG TTTTGTTTTGGCAAT Rpic_3684 3861718 - 3860780 - | transcriptional regulator, LysR family Rpic_3685 3862171 - 3863859 + | AMP-dependent synthetase and ligase TERM 3130 3863896 - 3863862 - T 93 -15.8 -3.53224 | opp_overlap 3863868 3863889, overlap 3863863 3863868 CATCGCCGCGTGAAA GCAAAACGGCCGCC AGAATTG GGCGGCCGTTTTGT CAGGTCTGCACGAAG TERM 3131 3863895 - 3863863 - T 88 -19.3 -2.71791 | opp_overlap 3863868 3863889, overlap 3863862 3863868 ATCGCCGCGTGAAAG CAAAACGGCCGCC AGAATTG GGCGGCCGTTTTG TCAGGTCTGCACGAA TERM 3132 3863868 - 3863890 + T 100 -13.4 -4.41548 | opp_overlap 3863863 3863862 3863868, overlap 3863889 CGCGTGAAAGCAAAA CGGCCGCC AGAATTG GGCGGCCG TTTTGTCAGGTCTGC TERM 3133 3863890 - 3863868 - T 100 -13.4 -4.54727 | opp_overlap 3863868 3863889, overlap 3863863 3863862 CGCGTGAAAGCAAAA CGGCCGCC AGAATTG GGCGGCCG TTTTGTCAGGTCTGC Rpic_3686 3865047 - 3863896 - | rod shape-determining protein RodA Rpic_3687 3867476 - 3865071 - | penicillin-binding protein 2 Rpic_3688 3868031 - 3867519 - | rod shape-determining protein MreD Rpic_3689 3869094 - 3868048 - | rod shape-determining protein MreC TERM 3134 3868162 - 3868183 + g 72 -3.6 -4.63218 | gap 1, overlap 3868162 3868167 CACATTGGCTTCGGC GG-CGGCGC GTGCG GCGCGGTCC TTTTCTTCGCGGGCA Rpic_3690 3870377 - 3869334 - | cell shape determining protein, MreB/Mrl family Rpic_3691 3870876 - 3871175 + | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 3135 3872609 - 3872643 + G 76 -9.9 -4.07568 | gap 1, overlap 3872636 ACGCTGTCGACCAGC CTGGCCGGCCTGC-CG GGCA TGAGCGTGCCGGCCGG TTTTGGCGCCAACGG TERM 3136 3872732 - 3872701 - g 76 -13.8 -3.05268 | gap 1, opp_overlap 3872709 CAACTATTTTGAAGA GGCACGCATGCTGCA GAT TGC-GCATGCGTTCC AGCAGGCGACCGACT Rpic_3692 3871274 - 3872773 + | glutamyl-tRNA(Gln) amidotransferase, A subunit Rpic_3693 3872813 - 3873298 + | putative lipoprotein TERM 3137 3873765 - 3873748 - g 70 -14.1 -2.5547 | overlap 3873724 3873747 ACGCGCGATATCAAT GGCGCGG TGCG CCGCGCC GACGTGCTGGCAACG Rpic_3694 3873295 - 3874260 + | dienelactone hydrolase Rpic_3695 3874346 - 3875812 + | glutamyl-tRNA(Gln) amidotransferase, B subunit Rpic_3696 3875827 - 3876516 + | protein of unknown function DUF484 Rpic_3697 3876531 - 3877517 + | tyrosine recombinase XerC Rpic_3698 3877557 - 3878759 + | PUA domain containing protein Rpic_3699 3878808 - 3879356 + | hypothetical protein TERM 3138 3879650 - 3879605 - g 74 -5.4 -4.52589 | gap 3, overlap 3879644 CGCCCTCATAGAAAA GCCCGACGATG-TGGCGC-CCGC CGT GCAGCGCATCATCAACG-CGGGC CAACGCCCGACGGTG Rpic_3700 3879489 - 3881015 + | Berberine/berberine domain protein Rpic_3701 3881028 - 3882266 + | 6-phosphogluconolactonase TERM 3139 3882456 - 3882422 - g 71 -13.5 -3.02144 | gap 1 CCATTCGCCTGAAGA GGCTGCCCGCGCACGC CTGC GCG-GCCTGGGCAGCC GTGTGACCGAGCCTC Rpic_3702 3882363 - 3882890 + | ferric uptake regulator, Fur family Rpic_3703 3882878 - 3883966 + | cobalamin synthesis protein P47K TERM 3140 3884254 - 3884238 - g 100 -7.2 -5.44119 | overlap 3884239 GCCACCCGAAAAAAA GCGGCA GGGGG CGCCGC TGCGGGAGAGGCAAA TERM 3141 3884515 - 3884494 - g 71 -3.7 -4.56775 | gap 1, overlap 3884496 ACCGGCTTGTAAAAA TGCGCGACGA AAT TC-TCGCGAA CGCCAATCAGACCGT Rpic_3704 3884136 - 3884807 + | transcriptional regulator, TraR/DksA family TERM 3142 3884812 - 3884833 + F 76 -6.5 -4.53439 | overlap 3884808 3884822 ATGGTGACTGACGCA CGCGTCGCA TGCG TTTGACGCG TTTGTTTGAGTTTGG TERM 3143 3884849 - 3884871 + F 100 -14.9 -4.21141 | TTTGTTTGAGTTTGG CAGCCCGGT AATCC ACCGGGCTG TTTGCTTTGTTAGGC Rpic_3705 3884908 - 3886215 + | cobalamin synthesis protein P47K TERM 3144 3886711 - 3886699 - g 74 -2.6 -4.77036 | GGCCACGATCAAAAA CAGC CCATC GCCG TTCACGATCTACACG TERM 3145 3886858 - 3886841 - g 82 -4 -5.00884 | opp_overlap 3886855, overlap 3886853 3886855 ATGGTGTCGAAAAAA GCCGTC GAAAAA GCCGGC GCGGACGATTTCAAC Rpic_3706 3886316 - 3887917 + | extracellular solute-binding protein family 5 TERM 3146 3888562 - 3888543 - g 71 -4.2 -4.57073 | gap 1 GATGTGGTGGAAAAA TCGCTGCGC ATT GC-CGGCGA ACTCTGCATCTATAC Rpic_3707 3888075 - 3888611 + | 20S proteasome A and B subunits TERM 3147 3889449 - 3889419 - g 70 -5.3 -4.45485 | gap 1, overlap 3889421 ACGAGATCGACAAAA TTGCCAGCCGCAGC GAAT ACGGCGGC-GGCGA GGTGTCACGTCAGGG Rpic_3708 3888638 - 3889969 + | heat shock protein HslVU, ATPase subunit HslU TERM 3148 3890001 - 3890028 + F 100 -22.8 -4.86731 | opp_overlap 3889995 3889994 TTCCAAAATGCCCTG CGGGCCGCATCG GAGA CGATGCGGCCCG TTTTGTTTGGGCGCC TERM 3149 3890144 - 3890132 - f 76 -9.1 -4.12532 | overlap 3890128 TGCCGCACAGACAAA TGCGC GCC GCGCA CCTGGCGTGCGCGAT Rpic_3709 3890186 - 3890800 + | conserved hypothetical periplasmic protein Rpic_3710 3890879 - 3891082 + | CsbD family protein Rpic_3711 3891694 - 3891116 - | two component transcriptional regulator, Fis family Rpic_3712 3893089 - 3891743 - | integral membrane sensor signal transduction histidine kinase Rpic_3713 3893231 - 3893725 + | protein of unknown function DUF461 TERM 3150 3893842 - 3893857 + G 74 -4.6 -4.54821 | opp_overlap 3893835, overlap 3893843 CAACGAAGGCCGGTA CTGCGC GCCC GCGCAA TTTTCTCGTTCCGCT Rpic_3714 3893772 - 3893993 + | hypothetical protein Rpic_3715 3894422 - 3894210 - | hypothetical protein Rpic_3716 3895050 - 3894457 - | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 3151 3894692 - 3894673 - G 85 -7.8 -4.60487 | gap 1, overlap 3894674 3894675 CAGCACGTCGAAAAA CTCGCGCCG TGA CAGCGCG-G CATCGGGGTCGCCCC TERM 3152 3895072 - 3895121 + H 85 -7 -4.78237 | gap 1, opp_overlap 3895098, overlap 3895074 3895074 CCAGGGTGTTCTTTC GTGGCAACGGTATGGCGG-GCAC GCAAG GTGCGCCACCAGACCGTAGCGCC TTTTCTTGTAAAATC TERM 3153 3895412 - 3895393 - g 72 -2.8 -4.69053 | gap 1 CATGACGGAAGAAAA GCTC-AAGC ACA GCTTCGCGC GCGACGTGATCCTGC Rpic_3717 3895226 - 3896152 + | acetylglutamate kinase Rpic_3718 3896152 - 3897009 + | pyrimidine 5'-nucleotidase TERM 3154 3897388 - 3897366 - g 70 -11.2 -3.38812 | overlap 3897364 3897367 GCTGCGTGAAGAACA CGGCCTGCGC CAG GCGCATGCCA TCGCGCACATGCTGC Rpic_3719 3897055 - 3897705 + | transcriptional regulator, TetR family TERM 3155 3897744 - 3897728 - T 100 -15.1 -4.4078 | opp_overlap 3897728 TCCCCCCAAGCAAAA GCCCCGC GAT GCGGGGC TTTCTTGTTGTGTGC TERM 3156 3897728 - 3897744 + T 100 -15.1 -4.55093 | opp_overlap 3897728 TCCCCCCAAGCAAAA GCCCCGC GAT GCGGGGC TTTCTTGTTGTGTGC Rpic_3720 3899291 - 3897768 - | transcriptional regulator, GntR family with aminotransferase domain Rpic_3721 3899445 - 3900725 + | 4-aminobutyrate aminotransferase TERM 3157 3901850 - 3901878 + G 74 -5.2 -4.56597 | gap 1, overlap 3901849 3901850 TGGTGGGCGGCAAGC CGCAT-GCCCTGT CGGC GCAGGGCGGCGCG TTTTTCGAGCCGACC Rpic_3722 3900730 - 3902232 + | succinic semialdehyde dehydrogenase TERM 3158 3902460 - 3902494 + F 95 -6.3 -5.68438 | TGCGCCACATGAGAA CCCGATTGGTTGCGT GAACA GCGTTGCCGGTCGGG TTTTTTATTTGGTGC Rpic_3723 3902511 - 3903725 + | homoserine O-acetyltransferase Rpic_3724 3903722 - 3904357 + | methionine biosynthesis protein MetW Rpic_3725 3904459 - 3905205 + | Sel1 domain protein repeat-containing protein TERM 3159 3905250 - 3905222 - T 100 -16.8 -5.4833 | gap 1, opp_overlap 3905222 GCACGCAAGAAAAAA CCGCCGG-GCATG GCTG CATGCACCGGCGG TTTTTGTTTGGGAGC TERM 3160 3905222 - 3905250 + T 100 -16.8 -5.27335 | gap 1, opp_overlap 3905222 GCACGCAAGAAAAAA CCGCCGG-GCATG GCTG CATGCACCGGCGG TTTTTGTTTGGGAGC Rpic_3726 3905475 - 3905281 - | protein of unknown function DUF466 Rpic_3727 3907538 - 3905484 - | carbon starvation protein CstA TERM 3161 3907721 - 3907757 + H 89 -13 -4.13945 | gap 1 ACACCCGACCGAGAC CGCGGCGCCACCTTGCG ATGC CGCAACGTA-CGCCGCG TTTTGCCATGAAGCT TERM 3162 3908186 - 3908207 + G 74 -10.8 -3.74872 | TCCAGAAACTGGTGG CTGCCGCC CAGGCC GGCGGCGG TTTCGTGCGCTACAT Rpic_3728 3907738 - 3909204 + | integral membrane sensor signal transduction histidine kinase TERM 3163 3909271 - 3909298 + G 71 -10.6 -3.58343 | gap 1 TCGTGCGCGATGGCG TGCGCGTGCGGCT GGA AGCCGTGC-CGCA TTTCGAAGTGGTGGG Rpic_3729 3909201 - 3909845 + | two component transcriptional regulator, LuxR family Rpic_3730 3910825 - 3909842 - | NAD-dependent epimerase/dehydratase TERM 3164 3910809 - 3910797 - G 74 -10.5 -3.72576 | opp_overlap 3910772 3910771 CGCTGGCCCAGGAAA CCGGC GCC GCCGG TGATGACGATATTCA Rpic_3731 3910959 - 3911675 + | GntR domain protein Rpic_3732 3911691 - 3912602 + | 3-hydroxyisobutyrate dehydrogenase TERM 3165 3912841 - 3912862 + G 70 -7.9 -3.96068 | overlap 3912817 CGCACTGCGCTGGCT GCGCGCGCA AGGC TGTTCGCGC TTCTTCTTCAAGTAC Rpic_3733 3912599 - 3913912 + | type III effector Hrp-dependent outers Rpic_3734 3913909 - 3914553 + | class II aldolase/adducin family protein Rpic_3735 3914619 - 3915944 + | major facilitator superfamily MFS_1 Rpic_3736 3915968 - 3916756 + | Hydroxypyruvate isomerase TERM 3166 3916861 - 3916834 - T 100 -19.2 -5.10933 | gap 1, opp_overlap 3916834 TGACGCAAAAGAAAA CCGCCGCT-GCGC GAT GCGCAAGCGGCGG TCGATTCCGGCGCAG TERM 3167 3916834 - 3916861 + T 88 -19.2 -2.52464 | gap 1, opp_overlap 3916834 TGACGCAAAAGAAAA CCGCCGCT-GCGC GAT GCGCAAGCGGCGG TCGATTCCGGCGCAG Rpic_3737 3917720 - 3916884 - | two component transcriptional regulator, winged helix family TERM 3168 3917776 - 3917800 + H 76 -9.9 -3.8211 | opp_overlap 3917754, overlap 3917777 GAGCAGCCCTGCGGC TGCGCTCTGCA GTC TGCGGTGCGCG TTGTTATGAGTGCCA Rpic_3738 3917894 - 3918187 + | hypothetical protein TERM 3169 3918204 - 3918188 - T 72 -10.9 -3.40403 | opp_overlap 3918191, overlap 3918191 TTTGCCGGATTATAA GAATCCC GTA GGGATTC GTCACGCAGGAATTT TERM 3170 3918535 - 3918551 + T 100 -10.8 -4.73614 | opp_overlap 3918535 GGCGGACGCAAAAAA GCCCGC GCGAG GCGGGC TTTCTTTTCCTGGTG TERM 3171 3918551 - 3918535 - T 100 -10.8 -5.08824 | opp_overlap 3918535 GGCGGACGCAAAAAA GCCCGC GCGAG GCGGGC TTTCTTTTCCTGGTG Rpic_3739 3920453 - 3918585 - | Phosphoenolpyruvate carboxykinase (GTP) TERM 3172 3920827 - 3920842 + H 83 -4.6 -5.14563 | opp_overlap 3920824 3920827, overlap 3920829 ATGGGAAGAATACCA CCGCGA GGGA TCGCTG TTTTTTGCTGCGCAC Rpic_3740 3920880 - 3921908 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpic_3741 3922830 - 3921940 - | Extradiol ring-cleavage dioxygenase class III protein subunit B Rpic_3742 3924356 - 3922932 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3173 3924402 - 3924444 + r 89 -18.2 -3.06815 | opp_overlap 3924428, overlap 3924437 CGACCTTGGCGGCGC GCCGGCGGGCGCGCCATGCG CAG CAAGCGGCGCGCCCGCCGCC TGTCTTGGAGGAGGT Rpic_3743 3925355 - 3924462 - | Patatin Rpic_3744 3926023 - 3925352 - | transcriptional regulator, TetR family TERM 3174 3925966 - 3925982 + g 71 -12.3 -3.24289 | AGAACACGTCTTCCG CCGCATC CAG GATGCGG TTACGTGTTTCCAGT TERM 3175 3926461 - 3926485 + H 81 -5.6 -4.84033 | overlap 3926480 GGCCATATCGCATGC CGCCAGATGC AGCTA GCATCGGACG TTTTCGTTTTTGTGT TERM 3176 3926480 - 3926491 + H 85 -2.2 -5.44837 | overlap 3926461 AGATGCAGCTAGCAT CGGA CGTT TTCG TTTTTGTGTTTTTTT Rpic_3745 3926595 - 3927866 + | efflux transporter, RND family, MFP subunit Rpic_3746 3927882 - 3931034 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family TERM 3177 3932532 - 3932512 - g 77 -16.1 -2.62184 | overlap 3932490 CGTGGCCGCACAGCA GGCACGGCC GAC GGCCGCGCC GGGCGTTGCGCCCGC Rpic_3747 3931037 - 3932581 + | RND efflux system, outer membrane lipoprotein, NodT family TERM 3178 3932604 - 3932624 + T 100 -14 -5.45726 | TCTGTTCGCTCGAAG GCCCGCCT TGTTC AGGCGGGC TTTTTTTCGCCTGTG Rpic_3748 3933706 - 3932615 - | DNA topoisomerase Rpic_3749 3933953 - 3934165 + | ribosomal protein S21 TERM 3179 3934398 - 3934437 + F 75 -8.5 -4.1552 | gap 1, opp_overlap 3934401 3934403, overlap 3934406 CCTTCTCTGTTGCAA CGACATCCGCCAG-CGGT AATTG ACCGGCTGGCTGTTGGCG TTTGTTGCGCCGATC Rpic_3750 3934505 - 3934756 + | hypothetical protein Rpic_3752 3935738 - 3935079 - | hypothetical protein Rpic_3754 3937548 - 3937150 - | NUDIX hydrolase Rpic_3755 3938999 - 3937554 - | tRNA modification GTPase TrmE Rpic_3756 3939059 - 3939457 + | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 3180 3939508 - 3939491 - T 100 -9.1 -5.00616 | opp_overlap 3939491 3939489 GGCGGGCGCAAAAAA GGGCACC CGGA AGTGCCC TCTTTGCTGAAGCGA Rpic_3757 3941195 - 3939531 - | 60 kDa inner membrane insertion protein Rpic_3758 3941639 - 3941202 - | protein of unknown function DUF37 Rpic_3759 3942058 - 3941636 - | ribonuclease P protein component TERM 3181 3942022 - 3941991 - G 78 -13.2 -3.53811 | opp_overlap 3941998, overlap 3941992 3941998 CGGACCGGCCGCAAA GCAAAAACGGATGA AAAC TCATCCGTTTTTGT CAGCCTCGCGGCCTT TERM 3182 3942021 - 3941992 - G 81 -16.7 -2.72144 | opp_overlap 3941998, overlap 3941991 3941998 GGACCGGCCGCAAAG CAAAAACGGATGA AAAC TCATCCGTTTTTG TCAGCCTCGCGGCCT TERM 3183 3942015 - 3941998 - G 100 -9.9 -4.98531 | opp_overlap 3941998, overlap 3941992 3941991 GCCGCAAAGCAAAAA CGGATGA AAAC TCATCCG TTTTTGTCAGCCTCG TERM 3184 3941998 - 3942015 + g 91 -9.9 -4.84359 | opp_overlap 3941998 3941992 3941991 GCCGCAAAGCAAAAA CGGATGA AAAC TCATCCG TTTTTGTCAGCCTCG TERM 3185 3942110 - 3942076 - R 74 -12 -3.53444 | opp_overlap 3942094 3942095 3942107 CCAGCGTGCCGCAAA GCCACGGACAACGGCC ATG AGCCGCCGCCCTCGGC GCGGCCGTCTTTAGA Rpic_3760 3942255 - 3942121 - | ribosomal protein L34 SEQUENCE gi|187930822|ref|NC_010683.1| Ralstonia pickettii 12J plasmid pRPIC01, complete sequence (length 80934) Rpic_4948 249 - 25 - | hypothetical protein Rpic_4949 617 - 246 - | transcriptional modulator of MazE/toxin, MazF TERM 1 548 - 521 - G 72 -11.3 -3.50853 | opp_overlap 520 518 517, overlap 518 TGGTCTGAATGACAA GAGCCGGGC GGTTTCGCTT GCCCGGCTC CTGCTTGTGGGTCTG Rpic_4950 834 - 604 - | hypothetical protein TERM 2 809 - 797 - G 70 -4.7 -4.36914 | GTCTCGGCGACAAAA GCGTC GCC GGCGC GGAAAGACAGGGTGT Rpic_4951 1045 - 1335 + | hypothetical protein Rpic_4952 1344 - 3077 + | integrase family protein TERM 3 3322 - 3344 + T 82 -14.9 -3.22298 | opp_overlap 3322 CCGGCAAATGAAAAA GCGAGAGGG GGAAA CCCTCTCGC TTGGTGCTGCGTCGG TERM 4 3344 - 3322 - T 100 -14.9 -4.98531 | opp_overlap 3322 CCGGCAAATGAAAAA GCGAGAGGG GGAAA CCCTCTCGC TTGGTGCTGCGTCGG Rpic_4953 3829 - 3380 - | hypothetical protein TERM 5 3897 - 3854 - R 77 -8 -4.35524 | overlap 3836 3856 3857 CCTTCAAAGGTAAAA GAGGCCATCCGTGGAGCGTC GTTA GACGACCCACGAATGGCAGG ACGTCTAAAGACAGG TERM 6 3895 - 3856 - R 93 -15 -3.78026 | overlap 3836 3854 3857 TTCAAAGGTAAAAGA GGCCATCCGTGGAGCGTC GTTA GACGACCCACGAATGGCA GGACGTCTAAAGACA TERM 7 3894 - 3857 - R 86 -18.5 -2.86093 | overlap 3856 3854 TCAAAGGTAAAAGAG GCCATCCGTGGAGCGTC GTTA GACGACCCACGAATGGC AGGACGTCTAAAGAC Rpic_4954 4238 - 3981 - | hypothetical protein Rpic_4955 4689 - 4276 - | hypothetical protein Rpic_4956 5124 - 4768 - | hypothetical protein Rpic_4957 5410 - 5213 - | hypothetical protein Rpic_4958 5765 - 5460 - | hypothetical protein Rpic_4959 6056 - 5817 - | hypothetical protein Rpic_4960 6737 - 6096 - | hypothetical protein Rpic_4961 7561 - 6908 - | hypothetical protein TERM 8 7713 - 7703 - H 95 -6.8 -5.42259 | overlap 7704 CCAGCCCGAAAAAAA CGCT CTG AGCG CCCGTATACGCGTCC TERM 9 8383 - 8360 - g 74 -10.3 -3.71552 | gap 1 AGTCGAGGAAGACAA GCCGG-TCGC GTACA GCGAGCCGGC GCTGGCCGAACGCAA Rpic_4962 8340 - 9095 + | initiator RepB protein TERM 10 9072 - 9087 + T 74 -6 -4.4767 | overlap 9073 TTCCGGTTTCGCGTC TCGCCC CAAG GGGCGC TTTTCTGATAGGTGG Rpic_4963 9929 - 9507 - | hypothetical protein TERM 11 9744 - 9760 + g 76 -5.7 -4.54821 | GTGAAAGATCAGCAC CGCCTTG ACC CCGGGCG TTTTCTCCTTGGCCT Rpic_4964 10635 - 9907 - | hypothetical protein TERM 12 10664 - 10645 - H 88 -6.4 -4.87665 | opp_overlap 10647, overlap 10647 GCGCATGCACAAAAA GAGAGCGT GTAC ACGCTCTT ATCTAGCGATCCGCC TERM 13 10662 - 10647 - H 76 -9 -4.06182 | opp_overlap 10647, overlap 10645 GCATGCACAAAAAGA GAGCGT GTAC ACGCTC TTATCTAGCGATCCG TERM 14 10753 - 10782 + H 86 -14.5 -3.31322 | gap 1, opp_overlap 10752 10748 GGCAAAGGAATCCAG TCA-GTTGGAACGC ATC GCGTTCCAACCTGA TTATAAGAGATTCCG TERM 15 11728 - 11751 + H 70 -10.2 -3.5362 | overlap 11726 GAGTGGTTGAGTAGG GCCGCGTGGC GCAA GCCACGTAGC TGTTTGTCGCGATTC TERM 16 12140 - 12119 - H 70 -3.7 -4.72272 | gap 1, overlap 12120 CGGTGGCAGCAAAAA CGACAGTCCA CCA TGG-CTGTCT CGGCACGCTGATCGC TERM 17 12494 - 12534 + H 93 -11.2 -4.3739 | gap 1, opp_overlap 12503, overlap 12503 CTATTTGCAGTTGAC TGGCCTAAACCAGAGGGGG ATTT CCCCCTCTGGTTTCA-CCG TTTTCTAACAAGATG TERM 18 12503 - 12526 + H 100 -18.2 -3.67737 | opp_overlap 12503, overlap 12494 GTTGACTGGCCTAAA CCAGAGGGGG ATTT CCCCCTCTGG TTTCACCGTTTTCTA TERM 19 12526 - 12503 - H 100 -18.2 -3.54424 | opp_overlap 12494 12503 GTTGACTGGCCTAAA CCAGAGGGGG ATTT CCCCCTCTGG TTTCACCGTTTTCTA Rpic_4965 12560 - 14299 + | Type IV secretory pathway VirB4 protein-like protein TERM 20 14347 - 14303 - T 78 -14.2 -3.25942 | gap 1, opp_overlap 14332 14335, overlap 14289 ATGGCGGCATAGCAA CCAG-GCGGCTCGCCAGGTGC GCAT GCACCTGGTGCGCGGCGCCGG CGGCGGTGCGCATGG TERM 21 14335 - 14359 + T 73 -13.5 -2.75064 | opp_overlap 14303, overlap 14332 14349 TGCGCATGCACCTGG TGCGCGGCGCC GGC GGCGGTGCGCA TGGTTCGGTGCCGGC TERM 22 14532 - 14565 + T 100 -25.5 -4.13767 | opp_overlap 14532 14536, overlap 14536 TGGAATATGAACGAA CAAAGGGCGGGAACC GAAA GGTTCCCGCCCTTTG TTTTGGCCTGGCGCC TERM 23 14565 - 14532 - T 100 -25.5 -3.45768 | opp_overlap 14532 14536, overlap 14536 TGGAATATGAACGAA CAAAGGGCGGGAACC GAAA GGTTCCCGCCCTTTG TTTTGGCCTGGCGCC TERM 24 14536 - 14561 + T 100 -20.5 -4.67048 | opp_overlap 14532 14536, overlap 14532 ATATGAACGAACAAA GGGCGGGAACC GAAA GGTTCCCGCCC TTTGTTTTGGCCTGG TERM 25 14561 - 14536 - T 100 -20.5 -4.35339 | opp_overlap 14536 14532, overlap 14532 ATATGAACGAACAAA GGGCGGGAACC GAAA GGTTCCCGCCC TTTGTTTTGGCCTGG Rpic_4966 15576 - 14773 - | hypothetical protein Rpic_4967 15812 - 15588 - | hypothetical protein TERM 26 15866 - 15845 - R 79 -14.4 -2.8547 | ATGGGGCAGATGACA GCCCCGGC ACGCTG GCCGGGGC CAGAGACGTTCAGCA Rpic_4968 16109 - 15876 - | hypothetical protein TERM 27 15956 - 15924 - G 79 -11.2 -3.85698 | gap 1, opp_overlap 15916 15915, overlap 15925 GTCTCGGGCCACAAA GCCCGTGGCCGACTC CAGC GCGGCGGCCACGG-C TTCGGCGCGTTGGTC TERM 28 16063 - 16074 + g 76 -2.2 -4.8543 | overlap 16041 GCTGTGATGGCATGG CGGA TCAG TTCG TTTTTGTCGGACTTG TERM 29 16137 - 16165 + r 93 -14.6 -3.92522 | overlap 16138 ATAGATTGTGGCTTG CGTGGTCCGAGC ACTCG GCTCGGACCACC TTTGTCGGGTTGCCC TERM 30 16138 - 16164 + r 86 -18.1 -2.95192 | overlap 16137 TAGATTGTGGCTTGC GTGGTCCGAGC ACTCG GCTCGGACCAC CTTTGTCGGGTTGCC TERM 31 16171 - 16199 + r 100 -6.6 -5.60993 | gap 1 TCGGACCACCTTTGT CGGGT-TGCCCGC GCGA GCGGGCGGGGCCG TTTTTTTCTAAGGCG Rpic_4969 17094 - 16207 - | ParB-like nuclease TERM 32 16303 - 16335 + g 85 -17 -3.07816 | gap 1 CCCCTTCTTCATCGC GGCGAGCGGTGCCGC CTCG GCGGCACCGA-CGCC TTCCGTGACTGCGGC TERM 33 18297 - 18312 + G 82 -6.8 -4.59773 | GTCGGGAACAGCGAG CGCGTT CCAA GACGCG TTTTTCCGCATGACA Rpic_4970 17491 - 18699 + | AAA ATPase central domain protein TERM 34 18950 - 18920 - f 76 -14.7 -2.52896 | opp_overlap 18916, overlap 18937 18938 GCAGTTGCCAAGGCA GTGCGTCGCCTCG AAAAG CGAGGCATCGCAC CGGCTTACATCCAGC Rpic_4971 18990 - 19823 + | metallophosphoesterase Rpic_4972 21121 - 19859 - | hypothetical protein TERM 35 20555 - 20543 - G 85 -7.7 -4.70583 | overlap 20545 CGCATCAACATAAAA GGTGA GGA TCACC TCGGCGTGCTTGAGC TERM 36 20677 - 20636 - G 71 -3.7 -4.48713 | gap 1, opp_overlap 20640, overlap 20640 CTGATCAAGAACAAA CAACGCTCGCCCTGAACG GCGGCTT CGATCATGGC-ACCGTTG AATGGCCGCGCCGCA Rpic_4973 21959 - 21201 - | Gp37Gp68 family protein TERM 37 21268 - 21290 + g 100 -4.6 -5.50499 | opp_overlap 21264 CGGCCATTTAATTCG CGGCCGTTGG CCG CCTTCGCCCG TTTTTTTCCGTCTGC Rpic_4974 22594 - 21956 - | peptidase S24 and S26 domain protein TERM 38 22417 - 22391 - G 88 -8.7 -4.59773 | gap 1 CTCCAGCGTGAAAAA GGCGGG-ACCTG GTGC CAAGCGCCCGCC CACAGACTTCGTCAG TERM 39 22666 - 22636 - R 100 -11.9 -5.20534 | gap 1, overlap 22639 22640 ACTAATCAAGAAAAA TAATCGGACGCGGC GGTA GCCGCGCCCG-TCA GATCAACGAAGCAGA TERM 40 22664 - 22639 - R 100 -13.9 -4.67357 | overlap 22636 22640 AATCAAGAAAAATAA TCGGACGCGGC GGTA GCCGCGCCCGT CAGATCAACGAAGCA TERM 41 22663 - 22640 - R 93 -17.4 -3.37974 | overlap 22639 22636 ATCAAGAAAAATAAT CGGACGCGGC GGTA GCCGCGCCCG TCAGATCAACGAAGC Rpic_4975 23567 - 22695 - | hypothetical protein TERM 42 23708 - 23718 + H 78 -6.8 -4.63586 | AGAGAGGAAGACCCA GCCA TCA TGGC TTTTATATCTGATAT Rpic_4976 24012 - 24365 + | hypothetical protein Rpic_4977 24457 - 26136 + | hypothetical protein Rpic_4978 27168 - 26095 - | hypothetical protein Rpic_4979 28070 - 27165 - | TniB family protein Rpic_4980 29985 - 28063 - | TniA transposase TERM 43 28140 - 28168 + g 72 -8.9 -4.07687 | opp_overlap 28149 GTCTGGTCGGCTCAA GCTTCGAAACTTG CGG CAAGTCTTGAGGC TTTTGCGCCCGAGCT Rpic_4981 30636 - 29989 - | TnsA endonuclease Rpic_4982 31078 - 32001 + | cation diffusion facilitator family transporter Rpic_4983 33605 - 31998 - | integral membrane sensor signal transduction histidine kinase Rpic_4984 33683 - 34288 + | two component transcriptional regulator, LuxR family Rpic_4985 37485 - 34318 - | heavy metal efflux pump, CzcA family TERM 44 36394 - 36370 - G 77 -12.2 -3.63991 | CAGTATGCTGAAGAA CAGCGCAAAC GGAAT GTTCGCGCTG ACAATGATGGCGCTG Rpic_4986 38652 - 37498 - | efflux transporter, RND family, MFP subunit TERM 45 38561 - 38543 - G 72 -11 -3.53012 | TGGCCCTGGCTCAAA GTGACGGC TTG GCCATCAC GCGACGGCGACGCAG Rpic_4987 38855 - 40372 + | RND efflux system, outer membrane lipoprotein, NodT family Rpic_4988 41214 - 40426 - | hypothetical protein Rpic_4989 41498 - 41938 + | hypothetical protein Rpic_4990 43659 - 42016 - | natural resistance-associated macrophage protein TERM 46 42176 - 42206 + g 78 -3 -4.88407 | TCACGGTCCAGCACG CTCACGCGCTGCGG GTG CTGCGGCCGGCGGG TTTTTCGTTCGATGC Rpic_4991 43909 - 43703 - | hypothetical protein TERM 47 44051 - 44021 - R 76 -13.3 -3.02947 | overlap 44005 44001 44048 GAGCGACGAGAGACA CCGCTGCCTTGCC TGGAC GGCAAGTCAGCAG CAGGGAACAACCGTG Rpic_4992 45800 - 44304 - | Carbohydrate-selective porin OprB Rpic_4994 48241 - 47099 - | ParB domain protein nuclease Rpic_4995 49134 - 48307 - | protein of unknown function DUF932 TERM 48 49252 - 49229 - R 79 -12.4 -3.48276 | opp_overlap 49219, overlap 49230 GGGGTGGGGAGATAA GCCCCTTCCC TCAC GGGAAGGGGT TGGGGAAGGGTGGGG TERM 49 49251 - 49230 - R 78 -15.9 -2.68823 | opp_overlap 49219, overlap 49229 GGGTGGGGAGATAAG CCCCTTCCC TCAC GGGAAGGGG TTGGGGAAGGGTGGG TERM 50 49362 - 49310 - R 100 -28 -3.53012 | gap 2, opp_overlap 49326 GGCCGCGTCGTCAAA GCATCCCCCCACAAGTCCCCCTCACC CTA GGTGCGGGGG--TTGTGGGGGGATGC AGACGCGGCTGACGG TERM 51 49326 - 49348 + r 86 -14.8 -3.29511 | opp_overlap 49310 CATCCCCCCACAAGT CCCCCTCACC CTA GGTGCGGGGG TTGTGGGGGGATGCA Rpic_4996 49894 - 49331 - | hypothetical protein TERM 52 49538 - 49498 - G 86 -15.3 -3.46602 | opp_overlap 49490 49516 GCCGTGACAGGACAA GCCAGACACGTGACAGTGC GCA GCGCTGGCGCGGGTCTGGC CCTGGCGCGGTCGTT TERM 53 49848 - 49886 + g 100 -13.9 -4.8622 | gap 1, overlap 49843 49849 49882 TGTTGATCGACGTTC TGCCATTCGCGGGGCGTC GATT GACGCTCC-CGAGTGGCC TTTTTCATTGGAGGC TERM 54 49849 - 49885 + g 93 -17.4 -3.5125 | gap 1, overlap 49843 49848 49882 GTTGATCGACGTTCT GCCATTCGCGGGGCGTC GATT GACGCTCC-CGAGTGGC CTTTTTCATTGGAGG Rpic_4997 50011 - 50346 + | hypothetical protein TERM 55 50421 - 50398 - f 74 -12.4 -3.15544 | opp_overlap 50398 TTTTAGCCGCACGAA CGGGGAGGGT GAAA ACCTTCCCCG TTTTTTCTTGTGACA TERM 56 50398 - 50421 + F 100 -14.6 -5.55769 | opp_overlap 50398 TTTTAGCCGCACGAA CGGGGAGGGT GAAA ACCTTCCCCG TTTTTTCTTGTGACA Rpic_4998 50545 - 50751 + | hypothetical protein TERM 57 50761 - 50744 - T 77 -3.4 -4.89063 | gap 1, overlap 50745 50746 GGACGCAAAAAGAAA CGCCGTG AGACA CACGG-G AATCGGCTCCTATAG TERM 58 50815 - 50793 - T 93 -14.9 -3.80461 | opp_overlap 50793 CAACGCAGCACCAAA GCGAGAGGG TTCAC CCCTCTCGC TTTTTTCTTGCCGCC TERM 59 50793 - 50815 + T 100 -14.9 -5.4505 | opp_overlap 50793 CAACGCAGCACCAAA GCGAGAGGG TTCAC CCCTCTCGC TTTTTTCTTGCCGCC Rpic_4999 51203 - 50856 - | hypothetical protein TERM 60 51101 - 51120 + g 85 -16.4 -3.14344 | opp_overlap 51101 CGCCAGACGCATCAA CGCCGGCC TGCA GGCCGGCG TTGATGGGGGACGTG TERM 61 51120 - 51101 - G 89 -16.4 -3.20382 | opp_overlap 51101 CGCCAGACGCATCAA CGCCGGCC TGCA GGCCGGCG TTGATGGGGGACGTG Rpic_5000 51495 - 51229 - | hypothetical protein TERM 62 51477 - 51491 + g 71 -12.8 -2.94872 | overlap 51474 TCATCCGTCTCCTTT GCCGGC CAG GCCGGC TCATTCTTGAGTCGC Rpic_5001 51728 - 51519 - | hypothetical protein Rpic_5002 52303 - 51731 - | endonuclease Rpic_5003 52494 - 52300 - | hypothetical protein Rpic_5004 52795 - 52547 - | hypothetical protein Rpic_5005 54045 - 52792 - | TraB family protein TERM 63 52923 - 52878 - G 71 -3.9 -4.46073 | gap 1, opp_overlap 52877 52878 GTGCAATAGAAGAAA TGCTTTGACGCTGGATCTCGCC AAC GGCCAGG-CCGTCGTCAAACCA GTTGTTGGCCAGGCC TERM 64 53809 - 53779 - G 80 -14 -3.35679 | overlap 53757 53780 CTGGGCGATCCAGAA CGCGACGCCGAC GGCGAGT GCCGGCGTCGCA CCCAGTTCGCCGTGG TERM 65 53808 - 53780 - G 74 -15.3 -2.61264 | overlap 53757 53779 TGGGCGATCCAGAAC GCGACGCCGAC GGCGAGT GCCGGCGTCGC ACCCAGTTCGCCGTG TERM 66 53853 - 53836 - G 100 -8.3 -4.87665 | GTGGACCGAGAAAAA CCGGGCG CATA CGACCGG GATGTCACGAGCGGC Rpic_5006 54462 - 54052 - | lytic transglycosylase catalytic Rpic_5007 55802 - 54459 - | conjugation TrbI family protein Rpic_5008 56755 - 55802 - | Conjugal transfer protein TrbG/VirB9/CagX TERM 67 56141 - 56151 + g 72 -8.2 -4.09685 | overlap 56138 CGTCGCGTCGATGCG CGGG CTC CCCG TTTTCGAGCCTCCCG Rpic_5009 57480 - 56752 - | hypothetical protein Rpic_5010 58496 - 57480 - | TrbL/VirB6 plasmid conjugal transfer protein Rpic_5011 58833 - 58501 - | hypothetical protein Rpic_5012 59780 - 58869 - | hypothetical protein TERM 68 59420 - 59442 + g 81 -11.2 -4.07885 | overlap 59421 59422 TGGTCTCGTTGATGA GCTCGCCCGG CAC CTGGGCGAGG TTTTGCAGCCGGGTG TERM 69 59421 - 59441 + g 80 -14.7 -3.04517 | overlap 59420 59422 GGTCTCGTTGATGAG CTCGCCCGG CAC CTGGGCGAG GTTTTGCAGCCGGGT Rpic_5013 62451 - 59773 - | Type IV secretory pathway VirB4 protein-like protein TERM 70 61362 - 61376 + g 75 -3.5 -4.77165 | gap 1, overlap 61361 TGTTCGCCTCTTCGG CG-GCC TTCA GGCGCG TTTTGTTCTGGCGCC Rpic_5014 62801 - 62445 - | type IV secretory pathway VirB3 family protein Rpic_5015 63223 - 62807 - | hypothetical protein Rpic_5016 64272 - 63241 - | type II secretion system protein E TERM 71 63367 - 63379 + g 76 -5.5 -4.57569 | CAAGAAGAAGCGGAA GGTCG AGG CGATC TTTTTGCGCAGATCC Rpic_5017 64816 - 64265 - | Lytic transglycosylase catalytic Rpic_5018 65166 - 64813 - | hypothetical protein Rpic_5019 65579 - 65187 - | single-strand binding protein Rpic_5020 65828 - 65616 - | hypothetical protein Rpic_5021 66091 - 65858 - | hypothetical protein TERM 72 66045 - 66067 + g 74 -11.3 -3.64703 | gap 1, opp_overlap 66044 CGGAGATGATGGAAG GC-GGCGCGA ATAT TCGCGCCCGC TTTGGCTGAAAAGGC Rpic_5022 67274 - 66249 - | SCP-like extracellular Rpic_5023 68185 - 67580 - | hypothetical protein Rpic_5024 69447 - 68209 - | hypothetical protein Rpic_5025 69938 - 69459 - | hypothetical protein Rpic_5026 70470 - 69970 - | hypothetical protein Rpic_5027 71545 - 70505 - | type II secretion system protein Rpic_5028 73371 - 71542 - | type II secretion system protein E TERM 73 72456 - 72443 - G 73 -9.5 -3.84451 | opp_overlap 72443 TCTCCCAAACGGAAA GCGCC CGGT GGCGC TTTGGGCGTGCACAA TERM 74 73059 - 73009 - G 73 -9.7 -3.89346 | gap 1, overlap 73053 TTCCCATGCTAGAAA GCGCGGGGTGCCATAGTG-ACGTG CATC CACGTGCACGACAAAACCCTGCGC GGCCAGCACACGTTG Rpic_5029 74627 - 73371 - | hypothetical protein TERM 75 73727 - 73711 - G 71 -7.9 -4.07568 | overlap 73712 GCCGGCGGCCCAAAA GGCGAGG AGG CCTCGCG AGAATGATTGGCCGA Rpic_5030 75196 - 74630 - | hypothetical protein Rpic_5031 76899 - 75214 - | PilN TERM 76 75655 - 75670 + g 71 -4 -4.52589 | gap 1, overlap 75655 75656 CGTCGCGTCCTGCAG C-GCAAG CAC CTTGCCG TTTTGTGTGACGCCA Rpic_5032 77495 - 76896 - | hypothetical protein TERM 77 77556 - 77529 - R 73 -10.7 -3.67481 | gap 1 TCAGAGAGAAATCAA GGCAAT-GCTGC GCGCT GCAGCGATTGCC ACCGCGTGTAGATCT Rpic_5033 77962 - 77525 - | Lytic transglycosylase catalytic Rpic_5034 78861 - 77959 - | hypothetical protein TERM 78 78368 - 78405 + g 72 -7 -4.30987 | gap 2, overlap 78362 78393 AGGCGTAGATCCGCT GGCGGTGCACCCTCGAAG CGGA TTTCG-GTG-GCGCCGCC TTTGTTGTCCCGAAT TERM 79 78840 - 78878 + g 84 -8.6 -4.58283 | opp_overlap 78865, overlap 78826 78841 78842 78863 78874 GGGTAGGCTTTTGGC TAGGCCCGCCTTGGTGGT GCA AACACCTTGGCGGGCCGC TTTTTGCGCGGCTTG TERM 80 78841 - 78877 + g 73 -12.1 -3.34488 | opp_overlap 78865, overlap 78826 78840 78842 78863 78874 GGTAGGCTTTTGGCT AGGCCCGCCTTGGTGGT GCA AACACCTTGGCGGGCCG CTTTTTGCGCGGCTT TERM 81 78842 - 78876 + g 77 -15.6 -2.60211 | opp_overlap 78865, overlap 78826 78841 78840 78863 78874 GTAGGCTTTTGGCTA GGCCCGCCTTGGTGGT GCA AACACCTTGGCGGGCC GCTTTTTGCGCGGCT Rpic_5035 79241 - 78972 - | hypothetical protein Rpic_5036 79312 - 79725 + | hypothetical protein Rpic_5037 79897 - 80268 + | hypothetical protein TERM 82 80336 - 80351 + F 84 -6 -4.88918 | TTCCTGCCACCCCGA CCCCCC ATTA GGAGGG TTTTCTTTCGCGTCG TERM 83 80724 - 80708 - g 79 -4.3 -4.87626 | opp_overlap 80715 TTGGAACAGCAAAAA GAGCCCA GCC TGGCCCC CGTGCTTATTGTGAT Rpic_5038 80594 - 80920 + | hypothetical protein