TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.381141 %AT, 5448959 nt, 54635 terms. Intergenic: 0.43294 %AT, H2T: 722308 nt, 6431 terms; T2T: 225227 nt, 4430 terms; H2H: 322767 nt, 5776 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|89255298|ref|NC_004041.2| Rhizobium etli CFN 42 symbiotic plasmid p42d, complete sequence (length 371254) RHE_PD00001 469 - 86 - | hypothetical protein RHE_PD00002 1575 - 616 - | putative insertion sequence transposase protein TERM 1 1602 - 1579 - H 73 -8.8 -4.0162 | overlap 1582 CGCCCACATCATAAA GAAGTCGCCC TATT GCGCGACCTC GCGACCGGCGACCGG TERM 2 1724 - 1714 - H 82 -8.2 -4.5442 | overlap 1716 TTCGCAAGCAGAAAA GCCG GGG CGGC ACTGTCGGCACGCGT TERM 3 2655 - 2607 - g 100 -21.8 -2.62184 | gap 1 TGCCCCGGCAGACCA GTCAGGCGCTGGCGGAG-CGCAT CATC ACGCTTCGCCGCCAGCGCCTGAC TGGCAAGCACATCGC RHE_PD00004 2393 - 3361 + | putative insertion sequence transposase protein TERM 4 4093 - 4103 + T 85 -8.2 -4.72272 | overlap 4066 CGAATTCGTCGTGCA GCCG AGA CGGC TTTTTGGTAGCGAGG RHE_PD00005 5373 - 4408 - | DNA resolvase protein TERM 5 5476 - 5439 - H 100 -15.5 -4.2349 | CCGTCAGACTCAAAA TGCTACCGCGGACGAGC AACG GAGCGTCCGCGGTGGCA AATGCGCGTCAGCGG TERM 6 5770 - 5738 - H 83 -14.3 -3.25823 | opp_overlap 5740 GCGGCGTTATAGCAA TCGCTTCCGATAAGC ATT ACTTATCGGAAGCCA GGTGTGGCCTGGAAC TERM 7 6099 - 6078 - g 72 -4.3 -4.57569 | overlap 6079 TGACCCTTTTAAAAA GCCACATCG CCGG CGATGAGGA GAGATTCCTGTCGAC RHE_PD00006 6041 - 7045 + | ATPase RHE_PD00007 7045 - 9516 + | hypothetical protein RHE_PD00008 10087 - 9539 - | hypothetical protein TERM 8 10987 - 10957 - g 81 -7.5 -4.44974 | overlap 10958 GCAAACCTGATAAAA TGGGCATCGTACC TAATC GGCACGATGCACG GCTTAGGCATCATGG RHE_PD00009 10210 - 11280 + | hypothetical protein RHE_PD00010 16478 - 12063 - | hypothetical protein TERM 9 14064 - 14084 + g 77 -3.9 -4.8622 | opp_overlap 14059 ATGGAAGGCAGCGGT CTGGTCC GCCCTTA GGTCCAG TTTTTCGTTGCGCAG TERM 10 15707 - 15681 - G 73 -6.5 -4.29396 | opp_overlap 15684, overlap 15684 AACTACCCATGAAAA GAGGTCGTCCA CGCTC TGGCCGACTTC TGCGAGCGGGACCAG RHE_PD00011 17000 - 16578 - | hypothetical protein RHE_PD00012 17399 - 18073 + | hypothetical protein TERM 11 18278 - 18268 - g 91 -4.6 -5.28315 | ACAAAAGCGAAAAAA CGGC TCG ACCG AGAAGGTTTCGCCGG RHE_PD00013 18203 - 18655 + | hypothetical protein RHE_PD00014 18892 - 19986 + | hypothetical protein RHE_PD00015 20437 - 21132 + | cation transport P-type ATPase protein RHE_PD00016 21919 - 21098 - | putative universal stress UspA protein RHE_PD00017 22049 - 22504 + | hypothetical protein TERM 12 22601 - 22623 + G 70 -12.6 -2.90075 | ATCTAATTTCACCTC GCACCCGCGT TTC GCGCGGGCGC TCTGATTCAAGACGA RHE_PD00018 22501 - 22920 + | hypothetical protein RHE_PD00019 22963 - 23853 + | hypothetical protein RHE_PD00020 23926 - 24654 + | alcohol dehydrogenase protein RHE_PD00021 24763 - 26118 + | serine protease DO-like protein TERM 13 26655 - 26604 - g 81 -8 -4.4261 | gap 2 GTGGCAATATCAAAA GAACGCTGCCTACGACGCCGTGCG GCATCT CGC-CGGCGTAGTAGGG-GTGTCC AACCTAGTGGAGCTG RHE_PD00022 26242 - 26889 + | hypothetical protein RHE_PD00023 27880 - 26855 - | putative two-component sensor histidine kinase/response regulator hybrid protein (FixL-related) TERM 14 27578 - 27592 + g 73 -12.8 -3.14344 | overlap 27583 CGGGATAGTTTCCGT GCCCCG AGG CGGGGC TTCCTCAGCCCGCTG RHE_PD00024 29919 - 28867 - | chalcone synthase protein RHE_PD00026 31002 - 31514 + | hypothetical protein RHE_PD00027 32122 - 31697 - | putative insertion sequence transposase protein RHE_PD00028 33247 - 32486 - | beta-lactamase like protein RHE_PD00029 33718 - 33350 - | putative carbon-monoxide dehydrogenase protein RHE_PD00030 34290 - 33715 - | carbon-monoxide dehydrogenase protein RHE_PD00031 34303 - 34641 + | hypothetical protein TERM 15 34788 - 34819 + F 77 -10 -3.96705 | opp_overlap 34807, overlap 34790 CTCCTGATGCTCGTT CTCGGGCCGCGC CACGCAAC GCGCGGCCCGTC TTTCGGTTTTCTCAA TERM 16 34790 - 34817 + F 100 -17 -3.56486 | opp_overlap 34807, overlap 34788 CCTGATGCTCGTTCT CGGGCCGCGC CACGCAAC GCGCGGCCCG TCTTTCGGTTTTCTC RHE_PD00032 34932 - 35399 + | hypothetical protein TERM 17 35528 - 35503 - f 95 -13.2 -4.63218 | opp_overlap 35500 CCCTGCCGAATAAAA GCGCCGCGTG CTCGTC CGCGCGGCGC AAATCCTTATTTGAT RHE_PD00033 36823 - 37179 + | putative insertion sequence transposase protein RHE_PD00034 37650 - 37258 - | hypothetical protein RHE_PD00035 39593 - 37677 - | L-ascorbate oxidase protein RHE_PD00036 40953 - 40252 - | 5-amino-6-(5-phosphoribosylamino)uracil reductase protein RHE_PD00037 41824 - 40985 - | oxidoreductase protein TERM 18 42940 - 42924 - g 100 -8.7 -5.7946 | overlap 42930 42932 42933 TGGCCAACAAAAAAA CGACAAG ACG CTCGTCG CCAAGCAGGGCTTCG RHE_PD00038 42304 - 43086 + | oxidoreductase protein RHE_PD00039 43098 - 44045 + | putative oxidoreductase protein TERM 19 44254 - 44270 + G 86 -15.1 -3.59262 | opp_overlap 44252 44251 GGGGTTCCGAAAGGC CGCCGCG CTT CGCGGCG TTTCCGGGTCTGCCC TERM 20 44892 - 44902 + G 73 -3.2 -4.67982 | GCATGGCGGAGGAGG GAGG CGG TCTC TTTTATTGCCTGCAG TERM 21 45027 - 45043 + G 74 -9.4 -3.9009 | CGCATCGACAGGTGC CGTCCG CTCTC CGGACG TTTCTCGACTACCTT RHE_PD00040 44177 - 45082 + | LysR family transcriptional regulator TERM 22 45582 - 45627 + G 81 -7.6 -4.42386 | gap 3, opp_overlap 45580 45578 ATCGGCCAACAGACC GCGCCGGGCCGCAACGAG-GTCC AAG GGGCGCTCGATGCG-CTTG-CGC TTTTGTCGCTGGAAG RHE_PD00041 45207 - 46235 + | insertion sequence transposase protein RHE_PD00042 46944 - 46561 - | hypothetical protein TERM 23 47432 - 47451 + G 76 -7.8 -4.38154 | gap 1, overlap 47436 ACCGACGGCCCCAAC GGCGCCCGC GGG GCGGG-GTC TTTTGTCGGAGGTGT TERM 24 48824 - 48790 - g 77 -14.3 -2.87211 | gap 1 AGCCGGCCGTACATA CGAGGTCGTCGCCGAG TACG CCCGGC-ACGACCACG TCAACCTCTATATCG RHE_PD00043 47294 - 49738 + | beta-glucosidase protein RHE_PD00044 50407 - 50036 - | hypothetical protein RHE_PD00045 51444 - 50551 - | transposase TERM 25 50656 - 50685 + g 93 -9.1 -4.72272 | opp_overlap 50662, overlap 50675 TGATGTCCTGATTGT CGCAAACGAGGCC GGTC GGCCGCGCTGGCG TTTTTCCTCAAGCGC RHE_PD00046 52916 - 51441 - | insertion sequence transposase protein RHE_PD00047 53696 - 53247 - | hypothetical protein RHE_PD00048 53909 - 54349 + | hypothetical protein RHE_PD00049 55186 - 54644 - | hypothetical protein RHE_PD00050 55636 - 55202 - | hypothetical protein TERM 26 57038 - 56993 - g 82 -6.1 -4.87665 | gap 1 CTGCATCGACAAAAA CCATCGACGC-CGGCGAAAT ACGCAAG ATCGCGCCGAGCGGCAACGG GCAGGCACTCGACAT TERM 27 57107 - 57095 - g 73 -6.9 -4.3586 | TTACCCAGAGCAAAA GCGGC GCC ACCGC GATCCTGGTCGATGC TERM 28 58618 - 58608 - g 72 -2.4 -4.77036 | overlap 58578 TTTCATCAGCAAAAA CGGC CCG GCAG ATGGCGGCGAGACGC TERM 29 59200 - 59168 - g 76 -10.6 -3.90744 | gap 1, opp_overlap 59165 59164 59168 GCGCGCTCGAAATAA TCGGCGGCATTGCCG GTAC CGGCAACGC-GCTGA TCGGTTTCTCCGAGG TERM 30 59330 - 59312 - g 73 -8.8 -4.08216 | opp_overlap 59322 GCAGCGCCGCCAAAA CCGGCC TTGCCGC GGCCGG ACTGGTCACCGGCCT RHE_PD00051 56896 - 59505 + | hypothetical protein TERM 31 61996 - 62020 + G 95 -9.9 -4.58395 | overlap 61992 CGACGAGCTGGCGCG GGCGCAGCGCA GCG TGCTCTCCGCC TTTTTCAAGAATACC RHE_PD00052 59726 - 62569 + | hypothetical protein TERM 32 62603 - 62647 + F 88 -13.6 -3.73775 | opp_overlap 62598, overlap 62606 CACCAAATATCTGGG TACTCACAGGCCCGGTTGGC GTAGA GGCGGTCGGGCCTGTGAATA TTTGATAGCAATAAA TERM 33 62606 - 62644 + F 80 -15.3 -2.66873 | opp_overlap 62598, overlap 62603 CAAATATCTGGGTAC TCACAGGCCCGGTTGGC GTAGA GGCGGTCGGGCCTGTGA ATATTTGATAGCAAT TERM 34 62791 - 62777 - f 71 -7.2 -4.11484 | opp_overlap 62777 62776, overlap 62758 TGTAATTTCCGAAAA TTAACC ATC GGTTAA GTTTAAACAATTGAC TERM 35 63001 - 62989 - f 70 -3.3 -4.78107 | CAGCACGACGAAAAA GGTCG ATC CGAAC AGCGAGAGCGAGATA RHE_PD00053 63181 - 63657 + | hypothetical protein TERM 36 64038 - 64014 - g 82 -3.6 -5.1356 | gap 2 CCTTACGAACAAAAA GCCCGGATGAGC TAC GC-CATC-GAGC AGCAGCTTGCCGAAA RHE_PD00054 63663 - 64484 + | nodulation protein RHE_PD00055 64487 - 65116 + | hypothetical protein TERM 37 65210 - 65189 - g 70 -10.1 -3.53811 | GGGAGGCGGCGCAAA TTCTGGCGG CTGC CCGCCAGGA CGCCGCCCAATCCCA RHE_PD00056 65113 - 65676 + | nodulation protein RHE_PD00057 65669 - 66988 + | type III secretion system ATP synthase protein TERM 38 67697 - 67678 - g 74 -9.2 -3.85817 | opp_overlap 67681 ATGCGCTCGGACAAA GGCGCGGT CCTC ACCGAGCC GCTCCTGTCGACGCC RHE_PD00058 66985 - 68004 + | type III secretion system translocation protein RHE_PD00059 68004 - 68657 + | type III secretion system protein RHE_PD00060 69003 - 69812 + | type III secretion system translocation protein TERM 39 69875 - 69830 - g 93 -8.1 -5.17353 | gap 1 ATACCGAGGAAAAAA CCCT-GCCGCCGAGCCGGGTGA AGC TCGATCGGCTCCGCCGCGAGGG CCAGGTTCCCCGCTC TERM 40 70389 - 70416 + G 100 -11.2 -4.70659 | overlap 70390 CTCGATCCTCGTCAT TGCCGCCGGCAT CATG GTGGCGGCGGCG TTTTTCGATATCCGC TERM 41 70390 - 70415 + G 76 -12.5 -3.41913 | overlap 70389 TCGATCCTCGTCATT GCCGCCGGCAT CATG GTGGCGGCGGC GTTTTTCGATATCCG TERM 42 70573 - 70553 - g 73 -11.1 -3.5394 | overlap 70542 AAATCGGCGCGGAAA TGCGCAGCA GCC CGCCGCGCA GGCAAGGATCAGGCC RHE_PD00061 69799 - 70596 + | type III secretion system translocation protein TERM 43 70620 - 70600 - T 79 -8.1 -4.4078 | opp_overlap 70590 70600 GGCCGGCAATGAAAA GCGGGAGCC TAA GCCGCCCGC TTGATCTTCGCTTTG TERM 44 70648 - 70668 + T 93 -16.9 -3.45118 | TTGCGGTTCCGGTGG TCGGGCGTC TCA GACGCCCGA TTGGTTGTCACCTAC RHE_PD00062 71571 - 70657 - | pectate lyase secreted protein TERM 45 71221 - 71244 + g 73 -3 -4.68994 | overlap 71222 GTTGACGACGATGAC GCTGCCCTCT TTCG AGAGGTCGGG TTTTTCCGTCGTGGT RHE_PD00063 73545 - 71614 - | type III secretory system protein TERM 46 71997 - 71950 - G 76 -14 -3.14344 | opp_overlap 71989 71990, overlap 71934 CAGCGCCGGCAGCAA TCCGCGCCGGTCGAGAAGCCCG AAGG CGATCTGCTTGACCAGCGCGGC GCGCGCCATTTCGGC RHE_PD00064 74537 - 73569 - | hypothetical protein TERM 47 74133 - 74106 - G 71 -9 -3.71672 | overlap 74102 74107 74124 GGCCAGCAAAAGCAA CGCCGCCAGCCC GAGA AGGCCGGCAGCC GCAATCCGGCGTGGC TERM 48 74589 - 74616 + H 83 -11.2 -3.96216 | opp_overlap 74595, overlap 74590 TCTTCGAGAGCGGGG AAGCGAGACGGG CGAA CCCGTCTCGCCA TTGTTTCAATCAGCC TERM 49 74590 - 74615 + H 80 -14.7 -2.97408 | opp_overlap 74595, overlap 74589 CTTCGAGAGCGGGGA AGCGAGACGGG CGAA CCCGTCTCGCC ATTGTTTCAATCAGC RHE_PD00065 75038 - 75586 + | hypothetical protein RHE_PD00066 75596 - 76009 + | hypothetical protein RHE_PD00067 76778 - 76014 - | putative transcriptional regulator protein TERM 50 76142 - 76124 - G 84 -8.8 -4.40993 | GAGAAAGGAGCAAAA CGTCGTCT ATC AGACGCCG TCCCTCCGCCGTGGA TERM 51 76296 - 76309 + g 76 -8.1 -4.16158 | CATCGAAGCGCTGAC GCGGT TCTT ACCGC TTTCATATTTTTGTA RHE_PD00068 76971 - 77354 + | hypothetical protein TERM 52 77753 - 77794 + F 93 -16.8 -3.53811 | opp_overlap 77760, overlap 77760 GCCGTTCGGTTCTTT TAGGAAAGCCTGCCGC ACCTCCTCCC GCGGCAGGCTTTTCTA TTTCGGGGCGATGGG TERM 53 77760 - 77787 + F 100 -11.3 -4.78848 | opp_overlap 77760, overlap 77753 GGTTCTTTTAGGAAA GCCTGCCGC ACCTCCTCCC GCGGCAGGC TTTTCTATTTCGGGG TERM 54 77787 - 77760 - f 83 -12 -3.72576 | opp_overlap 77760 77753 GGTTCTTTTAGGAAA GCCTGCCGCA CCTCCTCC CGCGGCAGGC TTTTCTATTTCGGGG TERM 55 78418 - 78458 + G 76 -8.2 -4.11216 | gap 1, opp_overlap 78395 GAATCTCGCGATCCT CGCCGCGCT-TGCCATGGT TCTT ACCGCGATATGGCGCGGCG TTTTACCCATAGGAA RHE_PD00069 77912 - 78484 + | hypothetical protein RHE_PD00070 79303 - 78554 - | hypothetical protein TERM 56 78977 - 78965 - G 76 -6.2 -4.66609 | overlap 78966 GAGCTTATCGAAAAA GCCG GCAAG CGGC CGGAGCTCCCTTGCG RHE_PD00071 80562 - 79462 - | hypothetical protein RHE_PD00072 81810 - 80677 - | hypothetical protein RHE_PD00073 83077 - 82688 - | hypothetical protein RHE_PD00074 83064 - 83582 + | putative insertion sequence transposase truncated protein RHE_PD00075 83696 - 84217 + | insertion sequence transposase protein RHE_PD00076 84667 - 86496 + | monophenol monooxygenase protein RHE_PD00077 86528 - 86983 + | hypothetical protein TERM 57 87511 - 87530 + G 82 -10.7 -4.07568 | overlap 87507 CTCACTGCTCTTCTC GCCGGGA TCGTAT TCCCGGC TTTTCCCAGCACCGG TERM 58 88629 - 88615 - g 76 -9.2 -4.10161 | GATGACTTTGCAAAA GGGCAC CCC GCGCCC ACCGGGAAGCCGGAA RHE_PD00078 87382 - 88995 + | hypothetical protein TERM 59 89179 - 89195 + F 70 -10.1 -3.53444 | overlap 89170 TCGAGGCTCTCGGCG GCGCTCC GCG GGAGTGC TTTGCGACCGGATGA TERM 60 90027 - 90041 + G 72 -2.7 -4.77567 | opp_overlap 90023 90024, overlap 90024 TCGAACATGAAGCGG CAGGC TGTCC GCCGG TTTTCTTCTGCGACT TERM 61 90241 - 90257 + G 78 -6.5 -4.54205 | GGTCGGCGTAGCGTT CCGGG AAGGTCA CCCGG TTTATTTGGTGTCCT TERM 62 90540 - 90553 + G 74 -2.3 -4.8667 | GCCTCTTCGGGGGAG CTTGG ATAA CCATG TTTTTGTCAGATCTG RHE_PD00079 89657 - 92047 + | hypothetical protein RHE_PD00080 92554 - 92219 - | hypothetical protein RHE_PD00081 93062 - 92757 - | hypothetical protein TERM 63 93093 - 93144 + H 76 -6.7 -4.56775 | GTGAGGAGTCGGAAT TTGTCACCTTCGCACTACAGATT GCACTA GATATGTAGCACGAAGGTTACAA TTTTTCAAGAGAGAT TERM 64 93756 - 93724 - g 78 -9.9 -4.07568 | opp_overlap 93717, overlap 93725 GGTCGCTCGGCAAAA TGCCTCTCTTCGAGT GCA AGTCGAAGAAAGGCT CAGACAGGCTATTGC TERM 65 93755 - 93725 - g 75 -13.4 -3.04398 | opp_overlap 93717, overlap 93724 GTCGCTCGGCAAAAT GCCTCTCTTCGAGT GCA AGTCGAAGAAAGGC TCAGACAGGCTATTG RHE_PD00082 93515 - 94369 + | GntR family transcriptional regulator RHE_PD00083 94684 - 95568 + | 6-phosphogluconate dehydrogenase protein RHE_PD00084 95646 - 96074 + | gamma-carboxymuconolactone decarboxylase protein RHE_PD00085 96152 - 96535 + | hypothetical protein RHE_PD00086 96532 - 97428 + | putative carboxylesterase protein RHE_PD00087 97454 - 98620 + | ribose ABC transporter, substrate-binding protein TERM 66 98625 - 98658 + F 89 -11 -4.27117 | opp_overlap 98623 98624, overlap 98626 TGTCGAAGTGAAACT GTTCTGCCCGGTGG GTCTTG CCACCGGACAGAAG TTTCTCTTGTGGGAG TERM 67 98626 - 98657 + F 81 -14.5 -3.15788 | opp_overlap 98623 98624, overlap 98625 GTCGAAGTGAAACTG TTCTGCCCGGTGG GTCTTG CCACCGGACAGAA GTTTCTCTTGTGGGA TERM 68 99713 - 99689 - g 78 -3.5 -4.96646 | CGAGAGAATGAAAAA GGTCGCATC GCTCGAA GACGCTACC AAAGCAGGAATCTCG RHE_PD00088 98712 - 100265 + | ribose ABC transporter, ATP-binding protein RHE_PD00089 100265 - 101236 + | ribose ABC transporter, permease protein RHE_PD00090 101248 - 102267 + | ribose ABC transporter, permease protein TERM 69 102725 - 102762 + G 74 -12.7 -3.29144 | opp_overlap 102731 102732 102735 TCCAGGTCACCAGGC CGACAAGCGACTGCTTG TCAT CAAGCAGCCGGTTGGCG TTGTGGCCGCCATCG TERM 70 103088 - 103103 + G 72 -7.5 -4.208 | opp_overlap 103073 GCTGAGCCTGGAACT CGGCG GCAATG CGCCG TTTATCGTTTTCGAC RHE_PD00091 102291 - 103778 + | succinate-semialdehyde dehdyrogenase [NAD(P)+] protein RHE_PD00092 104556 - 105098 + | hypothetical protein RHE_PD00093 105782 - 105291 - | putative insertion sequence transposase protein RHE_PD00094 105960 - 106319 + | putative insertion sequence transposase protein TERM 71 106367 - 106398 + F 86 -11.6 -4.15044 | gap 1, opp_overlap 106363 106374, overlap 106372 CTCGCTGGAAAGCCT GGCAAGACCGCTTCG ATC CGAAGCGG-CTCGTC TTTATTGACGAGACC TERM 72 106372 - 106395 + F 71 -11.8 -2.80244 | gap 1, opp_overlap 106363 106374, overlap 106367 TGGAAAGCCTGGCAA GA-CCGCTTCG ATC CGAAGCGGCTC GTCTTTATTGACGAG TERM 73 106392 - 106374 - f 80 -14.6 -3.03635 | opp_overlap 106372 106367 GAAAGCCTGGCAAGA CCGCTTCG ATC CGAAGCGG CTCGTCTTTATTGAC RHE_PD00095 106429 - 106908 + | putative insertion sequence transposase protein RHE_PD00096 107230 - 109239 + | methyl-accepting chemotaxis protein TERM 74 109672 - 109685 + G 73 -3.1 -4.77757 | gap 1, overlap 109672 109673 109680 TCAGGACGCATCGCA G-CTGC CTA GCAGAC TTTTGCTTTTTCACC RHE_PD00097 109481 - 109801 + | hypothetical protein RHE_PD00098 111051 - 110017 - | AraC family transcriptional regulator RHE_PD00099 111486 - 111869 + | putative insertion sequence transposase protein RHE_PD00100 111866 - 112210 + | insertion sequence transposase protein TERM 75 112275 - 112255 - f 71 -6.8 -4.34771 | GAAAAGGCAGGAAAA CCGGAGCA AATTG TGCTCTGG TAGGCCTCATGACGC RHE_PD00101 112284 - 113876 + | insertion sequence transposase protein TERM 76 114950 - 114918 - g 85 -5.6 -4.99035 | overlap 114919 TCATTTATAGAAAAA GGCTATCGG-GTCGCC GTA GGCGACGCCAATC-CC GCCGACTTCGCCTCC TERM 77 114958 - 114988 + G 85 -6 -5.03314 | overlap 114960 CCAATCCCGCCGACT TCGCCTCCCTGGCT GAA GGCCAGGGAAACAA TTTTTTACCGGTCAA RHE_PD00102 114753 - 115502 + | oxidoreductase RHE_PD00103 115714 - 118227 + | methyl-accepting chemotaxis protein RHE_PD00104 118412 - 119611 + | putative sugar ABC transporter, substrate-binding protein TERM 78 120103 - 120092 - g 76 -7.2 -4.36914 | overlap 120093 CCTTTTTTCAGAAAA GGCG CAAT CGCC GGAGAGACGAAGCGC RHE_PD00105 120043 - 122601 + | putative sensory box/GGDEF family protein TERM 79 122751 - 122769 + F 70 -10.2 -3.3452 | overlap 122767 AACGACCATGCGTTG TGCGGCCC CGC GAGCCGCA TTCTCGAATGCTCTG TERM 80 122910 - 122878 - f 79 -7.9 -4.56597 | overlap 122880 GGCTTTCTTCAAAAA TATTTGACAGATTAT CAT ACAATCTGCCAAAAA TGTCGCCAAGCACCT TERM 81 122908 - 122880 - f 79 -10.5 -3.90048 | overlap 122878 CTTTCTTCAAAAATA TTTGACAGATTAT CAT ACAATCTGCCAAA AATGTCGCCAAGCAC RHE_PD00106 122954 - 123838 + | putative metallo-hydrolase protein RHE_PD00107 123851 - 124978 + | alcohol dehydrogenase protein RHE_PD00108 125263 - 125772 + | hypothetical protein RHE_PD00109 126007 - 126582 + | AsnC/GntR family transcriptional regulator protein TERM 82 127047 - 127019 - g 73 -13.1 -3.14132 | opp_overlap 127018 GTTCGCCCGTAGCAA TCGCTCAAGCGCG TCC CGCTCTGGAGCGA CTGTTCGAAATCGTC RHE_PD00110 126712 - 127941 + | putative hydrolase protein TERM 83 129209 - 129183 - T 74 -10.8 -3.5882 | opp_overlap 129186 GAGATGAGCCCCAAA TCAGCCTGCCCC GCT GTGGCACGCTGA TATCCCCTTCCGACC RHE_PD00113 130425 - 129658 - | short chain dehydrogenase TERM 84 129834 - 129851 + g 71 -5.5 -4.26903 | overlap 129835 GAAGCTTCGCGGGGT CCTTCGC TTCG GCGAAGA TTTTCGTGAAGTAAG TERM 85 130461 - 130519 + H 81 -10.7 -4.05033 | opp_overlap 130462 130463 130472 130475, overlap 130462 130464 GGTGCCTTAGAAGAC -ATTTTAGCAGACAATCTGTCAATTGTGA AAA TC-CAGTTGACAGATTGTCTGCTGATCTG TTTATCTAGGCTCGA TERM 86 130462 - 130517 + H 91 -15.8 -3.61946 | gap 1, opp_overlap 130462 130463 130472 130475, overlap 130461 130464 GTGCCTTAGAAGACA TTTTAGCAGACAATCTGTCAATTGTGA AAA TC-CAGTTGACAGATTGTCTGCTGATC TGTTTATCTAGGCTC TERM 87 130517 - 130462 - H 71 -11.4 -3.17146 | gap 1, opp_overlap 130462 130461 130464, overlap 130463 130472 130475 GTGCCTTAGAAGACA TTTTAGCAGACAATCTGTCAATTGTGA AAA TC-CAGTTGACAGATTGTCTGCTGATC TGTTTATCTAGGCTC TERM 88 130516 - 130463 - H 80 -14.9 -2.50074 | gap 1, opp_overlap 130462 130461 130464, overlap 130462 130472 130475 TGCCTTAGAAGACAT TTTAGCAGACAATCTGTCAATTGTGA AAA TC-CAGTTGACAGATTGTCTGCTGAT CTGTTTATCTAGGCT TERM 89 130464 - 130515 + H 100 -22.8 -3.38294 | gap 1, opp_overlap 130463 130462 130472 130475, overlap 130462 130461 GCCTTAGAAGACATT TTAGCAGACAATCTGTCAATTGTGA AAA TC-CAGTTGACAGATTGTCTGCTGA TCTGTTTATCTAGGC RHE_PD00114 130560 - 131069 + | 4-hydroxyphenylacetate-3-monooxygenase protein TERM 90 131507 - 131526 + G 76 -9.3 -4.08216 | TGCGGCCATCGACAG CTTCCGC GTGGCA GCGGAAG TTTTCGACGAGATGG RHE_PD00115 131142 - 131549 + | gamma-carboxymuconolactone decarboxylase protein TERM 91 132213 - 132203 - g 71 -8.2 -3.83262 | opp_overlap 132202, overlap 132200 132204 CAAACCCTACAACAA GGCG GGT CGCC CGCTCCTGATCTGCG RHE_PD00116 131610 - 132731 + | putative monooxygenase protein TERM 92 132766 - 132736 - f 71 -11.9 -2.78712 | gap 1, overlap 132733 TGCGCAACTGAACCA GTCCTCGGGACGGC GATT GCCGTCCCGAC-AC GAACTCTGCCAGATT TERM 93 132770 - 132790 + F 71 -7.5 -4.09685 | opp_overlap 132770 132771, overlap 132771 CCGTCCCGACACGAA CTCTGCCAG ATT CTGGCAGGA TTTTCGCGGCTGGCG TERM 94 132771 - 132789 + F 71 -11 -3.05597 | opp_overlap 132770 132771, overlap 132770 CGTCCCGACACGAAC TCTGCCAG ATT CTGGCAGG ATTTTCGCGGCTGGC RHE_PD00117 132855 - 134024 + | sugar ABC transporter, substrate-binding protein TERM 95 134054 - 134088 + G 93 -20.1 -2.93747 | overlap 134047 134048 AAGGAGACCTCCCAG CCTCCCGCGTCGGTT TCTAT AATCGGCGCGGGAGG TATCTGCGATTTGAT RHE_PD00118 134024 - 135319 + | aminotransferase RHE_PD00119 135331 - 135729 + | hypothetical protein RHE_PD00120 136090 - 136608 + | NAD(P)H-dependent FMN reductase protein TERM 96 137560 - 137541 - g 75 -2.8 -4.93877 | gap 1, overlap 137542 GCTTAGGAAACAAAA TTGC-GGCT TAC AGCCTGCAG GATCATGGTCGTGAT RHE_PD00121 136625 - 137905 + | GTP cyclohydrolase II protein RHE_PD00122 138182 - 138568 + | hypothetical protein RHE_PD00123 138565 - 138918 + | insertion sequence transposase protein TERM 97 138948 - 138968 + F 86 -10.3 -4.28361 | opp_overlap 138947 138946 CTCGGTCGGCAAATT CCGACGGCG AAG CGCCGCTGG TTTTGATAGGCTTCC RHE_PD00124 138987 - 140519 + | insertion sequence transposase protein RHE_PD00125 141227 - 140601 - | hypothetical protein RHE_PD00126 142481 - 141375 - | aryl-alcohol dehydrogenase protein TERM 98 142647 - 142670 + r 70 -5.3 -4.41241 | overlap 142648 ATCAAAGGGTTCCGA TGCATGTTC GAAAGG GAGCATGCG TTTTGTCCCGCTTTG RHE_PD00127 143475 - 142846 - | phosphoglycerate mutase protein TERM 99 143078 - 143068 - G 78 -4.6 -4.72272 | TTCGCTTATCAAAAA GGGC AGA ACCC TCGCGCTTATGTCCC RHE_PD00128 143731 - 144819 + | sugar ABC transporter, substrate-binding protein TERM 100 144851 - 144824 - f 81 -14.2 -3.15579 | overlap 144827 TCAAGGCTTGATGAA CTACGGGCACGA TCAC TCGTGCCCGTAT CCCTGTCGAAGATGG TERM 101 144848 - 144827 - f 82 -15.9 -2.78018 | overlap 144824 AGGCTTGATGAACTA CGGGCACGA TCAC TCGTGCCCG TATCCCTGTCGAAGA RHE_PD00129 144875 - 146404 + | sugar ABC transporter, ATP-binding protein RHE_PD00130 146417 - 147358 + | sugar ABC transporter, permease protein TERM 102 148191 - 148231 + G 75 -14.5 -2.78891 | overlap 148187 148187 CGGCGGTGTGACGTT CGGCGTCGACCGGGGCGGC GTC GCCGGGCCGTTCGTTGCCG TCGTTGCCTTCAGCT RHE_PD00131 147376 - 148362 + | sugar ABC transporter, permease protein TERM 103 149249 - 149264 + G 74 -10.4 -3.71284 | opp_overlap 149242, overlap 149259 TCGATCAAGTGCACC CGTGCC GGCG GGCACG TTGTCTTGCTCGGCC RHE_PD00132 148421 - 149524 + | aryl-alcohol dehydrogenase protein RHE_PD00133 149537 - 149848 + | hypothetical protein TERM 104 149853 - 149832 - f 70 -9.5 -3.47526 | gap 1, overlap 149830 CGATTAATGTAAATA CCCGTATCAG CGA CTGAT-CGGG CGCAATGGCCATTTC RHE_PD00134 149912 - 151177 + | NADH dehydrogenase protein RHE_PD00135 151474 - 152439 + | AraC family transcriptional regulator TERM 105 152535 - 152521 - f 74 -7.1 -4.37886 | GCACTCTCCAGAAAA GCCGA CTGCC TCGGC CCAAGATCTGTCTTG RHE_PD00136 152732 - 154993 + | methyl-accepting chemotaxis protein TERM 106 157119 - 157109 - g 73 -8.2 -4.07885 | GATTGGGGCTGAAAA GCGC CTA GCGC TAGAATCAGACCTAC RHE_PD00137 155169 - 157967 + | two-component sensor histidine kinase protein TERM 107 158640 - 158627 - f 82 -2.3 -5.40072 | opp_overlap 158630, overlap 158629 GGTGGCGGAAAAAAA CGCCA GCGA TTGCG CCGTGATTTCGTAAT TERM 108 159159 - 159177 + F 81 -10.2 -4.07885 | GCCCTGCGGGTGCGG GCCGCGCT TGC AGCCCGGC TTTTGGACCGCCGTA RHE_PD00139 159233 - 160111 + | conjugal transfer antirestriction protein TERM 109 160160 - 160133 - f 77 -11.2 -3.65046 | opp_overlap 160136, overlap 160136 GCCGGATCTCAACAA GGAGGAGGCGGC TTGA GCCGCCTCCTTA TCAGCCACCCGGACG TERM 110 160157 - 160136 - f 89 -17.3 -2.94045 | opp_overlap 160136, overlap 160133 GGATCTCAACAAGGA GGAGGCGGC TTGA GCCGCCTCC TTATCAGCCACCCGG TERM 111 160136 - 160157 + F 91 -17.3 -3.28712 | opp_overlap 160136 160133 GGATCTCAACAAGGA GGAGGCGGC TTGA GCCGCCTCC TTATCAGCCACCCGG RHE_PD00140 160299 - 160619 + | hypothetical protein RHE_PD00141 161340 - 160891 - | hypothetical protein RHE_PD00142 161361 - 161897 + | hypothetical protein RHE_PD00143 161901 - 162569 + | transport secretion system IV, VirB1 protein RHE_PD00144 162566 - 162865 + | transport secretion system IV, VirB2 protein TERM 112 162956 - 162988 + GF 76 -9.1 -4.0641 | overlap 162957 162959 GCGTGACGATGGAGG CGATGGGCGTCAACA TCA TGCTGACGACCATCC TTTATATCACTGCGG TERM 113 162957 - 162987 + GF 75 -12.6 -3.03525 | overlap 162956 162959 CGTGACGATGGAGGC GATGGGCGTCAACA TCA TGCTGACGACCATC CTTTATATCACTGCG RHE_PD00145 162871 - 163209 + | transport secretion system IV, VirB3 protein TERM 114 164818 - 164866 + GF 81 -14.6 -3.14132 | CTTGGCGGTCGACGG GGTG-GCGGACCTGCCGGTGGAGC GTC GCTCCATCGGC-GCCCTGCGCACC TTCCTCAACAACACC RHE_PD00146 163181 - 165568 + | transport secretion system IV, VirB4 protein RHE_PD00147 165565 - 166266 + | transport secretion system IV, VirB5 protein TERM 115 166265 - 166275 + F 73 -5.4 -4.56597 | opp_overlap 166265, overlap 166251 GAGCGGCGCTCAAAT GAAG TGG CTTC TTTTTAGCGCGGCAA RHE_PD00148 166499 - 167431 + | transport secretion system IV, VirB6 protein RHE_PD00149 167473 - 167754 + | transport secretion system IV, VirB7 protein RHE_PD00150 167756 - 168427 + | transport secretion system IV, VirB8 protein TERM 116 168453 - 168465 + G 73 -6.9 -4.34402 | TCTCCTTCCGCTCAT CCTGG CCA CCGGG TTTTCGTCTGCAGCG RHE_PD00151 168424 - 169281 + | transport secretion system IV, VirB9 protein RHE_PD00152 169290 - 170465 + | transport secretion system IV, VirB10 protein TERM 117 170923 - 170935 + G 74 -9.1 -3.85698 | opp_overlap 170932, overlap 170934 ATACTATCGCATCGG CGCCT ACA AGGCG TTTCTCCGGGAGGCG RHE_PD00153 170474 - 171502 + | transport secretion system IV, VirB11 protein RHE_PD00154 172084 - 171539 - | hypothetical protein RHE_PD00155 172731 - 172105 - | putative excisonase protein TERM 118 172793 - 172767 - R 90 -8.7 -4.89339 | gap 1, opp_overlap 172769, overlap 172769 AACTATGCAGAAAAA TAGGGCCGCTGG AAAA CCAG-GGCCCTT TAAGGTGTGAAGGTC TERM 119 172769 - 172791 + r 77 -11.3 -3.63627 | gap 1, opp_overlap 172767 172769 CTATGCAGAAAAATA GGGCCGCTGG AAAA CCAG-GGCCC TTTAAGGTGTGAAGG TERM 120 172791 - 172769 - R 86 -11.3 -4.06182 | gap 1, opp_overlap 172769, overlap 172767 CTATGCAGAAAAATA GGGCCGCTGG AAAA CCAG-GGCCC TTTAAGGTGTGAAGG RHE_PD00156 174248 - 173058 - | hypothetical protein RHE_PD00158 176165 - 176431 + | hypothetical protein RHE_PD00159 176832 - 176485 - | hypothetical protein RHE_PD00160 176816 - 177334 + | hypothetical protein RHE_PD00161 177292 - 177756 + | hypothetical protein TERM 121 177798 - 177765 - T 100 -15.4 -4.4846 | gap 2, opp_overlap 177763 177753 GAACTGAAGAACAAA GCG-AG-CGGCCCCGA GCAA TCGGGGCCGGCTTCGC CGTATCTCAGGTTTT TERM 122 177824 - 177864 + T 82 -16.2 -2.78384 | opp_overlap 177824 177836, overlap 177827 177835 GTTTTGCGCGCAATA GCGGGATTGAAAGCGGGC ATCGA GCCCGCCTTCAATCCTCC TGTCGTGCCACACGA TERM 123 177864 - 177824 - T 83 -16.2 -3.01712 | opp_overlap 177824 177827 177835, overlap 177836 GTTTTGCGCGCAATA GCGGGATTGAAAGCGGGC ATCGA GCCCGCCTTCAATCCTCC TGTCGTGCCACACGA TERM 124 177827 - 177861 + T 91 -18.7 -2.66316 | opp_overlap 177824 177836, overlap 177824 177835 TTGCGCGCAATAGCG GGATTGAAAGCGGGC ATCGA GCCCGCCTTCAATCC TCCTGTCGTGCCACA TERM 125 177852 - 177836 - T 74 -10.8 -3.65529 | opp_overlap 177835 177827 177824, overlap 177824 ATAGCGGGATTGAAA GCGGGC ATCGA GCCCGC CTTCAATCCTCCTGT TERM 126 177956 - 177999 + T 78 -13.8 -3.16564 | GACTTCGCGGCCCCT CCAATTTTCAGCCGGCGCCC TGAA GGGCACCGTCAGAAAATCGG TTCCTCCGCTCGCCG TERM 127 178186 - 178155 - T 71 -8.6 -3.89346 | GGCCGAGCTCAGAAA CGCCGATCCGGCTG AGCG CCGCCAGATCGAAG CGGAGCTGGAGATCG RHE_PD00162 178655 - 178350 - | hypothetical protein TERM 128 178700 - 178725 + r 86 -7.7 -4.93296 | opp_overlap 178704 GTCTAACGACACTTA TGAATCGGT CGGCCCAC ACCGATTCA TTTTTGTGATGATCG RHE_PD00163 179154 - 178723 - | hypothetical protein TERM 129 179231 - 179246 + G 72 -4 -4.56775 | gap 1, opp_overlap 179227 179226, overlap 179227 179234 TCCTGGCAAACCGCT TCGGCTG CGA CAGC-GA TTTTTCGCGAGAGCT RHE_PD00164 179158 - 179478 + | hypothetical protein TERM 130 179682 - 179652 - gf 70 -11.2 -2.90212 | opp_overlap 179656, overlap 179667 GCACCATCTCACATA CTGAGAGGCGAC AGACGAG GTTGCCTCTCAG TTGCCGATGGCCCTC RHE_PD00165 179475 - 179876 + | hypothetical protein RHE_PD00166 179789 - 180058 + | hypothetical protein RHE_PD00167 181986 - 180067 - | conjugal transfer protein G TERM 131 181782 - 181740 - G 74 -2.5 -4.94487 | gap 1, overlap 181742 CGAGAAAACACAAAA GACTTGCCATGGCGACCGGC CTTC GCCGAT-GCAGCGGCAGGGC CCAAACTGTCAGAAG RHE_PD00168 182216 - 181977 - | conjugal transfer protein D RHE_PD00169 182493 - 182206 - | conjugal transfer protein C TERM 132 185083 - 185034 - g 77 -13 -3.65827 | gap 3, opp_overlap 185049, overlap 185080 185081 GAATGGGGACGCAAA CCGCGTGTCGATCATGC-CGCCGGT GTC ACCGGCGAGCTTG-TCGAAAC-CGG CGAAGCCAAATTCCG TERM 133 185049 - 185070 + G 72 -12.3 -3.28712 | gap 1, opp_overlap 185034 CCGCGTGTCGATCAT GC-CGCCGGT GTC ACCGGCGAGC TTGTCGAAACCGGCG RHE_PD00170 182667 - 187325 + | conjugal transfer protein A RHE_PD00171 187900 - 187430 - | hypothetical protein RHE_PD00172 189077 - 188064 - | hypothetical protein TERM 134 189691 - 189732 + G 73 -10.9 -3.59262 | gap 1, opp_overlap 189696, overlap 189692 TTTTCCAACCTCACG ACCAAGCTCCCGCGCGTAGG CAC CTTACGTCCGG-AGCTTGGA TTTAGAGATCTGCCA TERM 135 189692 - 189731 + G 75 -14.4 -2.75343 | gap 1, opp_overlap 189696, overlap 189691 TTTCCAACCTCACGA CCAAGCTCCCGCGCGTAGG CAC CTTACGTCCGG-AGCTTGG ATTTAGAGATCTGCC RHE_PD00173 189334 - 190218 + | AraC family transcriptional regulator RHE_PD00174 190319 - 191542 + | putative transporter protein RHE_PD00175 191545 - 192951 + | hypothetical protein TERM 136 193191 - 193169 - f 71 -12 -2.78816 | opp_overlap 193162 CGATTCGGCACCACA CTCCTTGACC TTC GGTCGAGGAG CCTGTGGCGTATGTC TERM 137 193544 - 193531 - g 76 -8.1 -4.16158 | TACAAAAATATGAAA GCGGT AAGA ACCGC GTCAGCGCTTCGATG TERM 138 193698 - 193716 + G 84 -8.8 -4.40993 | TCCACGGCGGAGGGA CGGCGTCT GAT AGACGACG TTTTGCTCCTTTCTC RHE_PD00176 193329 - 193814 + | putative transcriptional regulator protein RHE_PD00177 195121 - 193886 - | hypothetical protein TERM 139 194704 - 194688 - G 74 -9.3 -3.83026 | overlap 194690 TCGGCGTACATGAAA GACGGGC CTG GCCCGGC ATCCATGGCAATCAG RHE_PD00178 196045 - 195203 - | nopaline ABC transporter, substrate-binding protein RHE_PD00179 196852 - 196103 - | nopaline ABC transporter, permease protein RHE_PD00180 197552 - 196857 - | nopaline ABC transporter, permease protein TERM 140 198074 - 198084 + G 73 -8.2 -4.05446 | ATGATCGGCATCGCG GCGC CAA GCGC TTTCTCCTTCGCGAC RHE_PD00181 197726 - 198676 + | LysR family nopaline catabolism transcriptional regulator TERM 141 200318 - 200294 - f 77 -9.9 -3.91897 | overlap 200295 GTCCGCAGCCATAAA GTCAGCGGCGG AAA CAGCCGCTGAA AGTCTGGCTCCGACG TERM 142 200317 - 200295 - f 77 -13.4 -2.94924 | overlap 200294 TCCGCAGCCATAAAG TCAGCGGCGG AAA CAGCCGCTGA AAGTCTGGCTCCGAC TERM 143 200551 - 200537 - g 73 -11.4 -3.59315 | opp_overlap 200547 200549 CCAACGAGCTCCAAA GTCGCG ATA CGCGAC GGCGTCGGCTGACTT RHE_PD00182 200373 - 200741 + | hypothetical protein RHE_PD00183 201136 - 201687 + | hypothetical protein RHE_PD00184 201482 - 201940 + | putative insertion sequence ATP-binding protein TERM 144 202138 - 202098 - g 78 -3.1 -5.07486 | opp_overlap 202121 GACGGTGAAGAAAAA CAAGATCGGCCAGACCCGC TGG GCAGTTAAGGCTGATGTTG TCGATCTCGTTCGCA RHE_PD00185 202081 - 202617 + | hypothetical protein RHE_PD00186 203066 - 203521 + | hypothetical protein RHE_PD00187 204283 - 203867 - | hypothetical protein TERM 145 205904 - 205891 - g 100 -3.7 -5.42259 | overlap 205893 GGACGCTTAAAAAAA GCCGC GATA GTGGC CCTGGCGCGCAAACT RHE_PD00188 204823 - 205989 + | insertion sequence transposase protein RHE_PD00189 206381 - 207118 + | hypothetical protein RHE_PD00190 208546 - 207125 - | putative insertion sequence transposase protein RHE_PD00191 208923 - 208720 - | hypothetical protein TERM 146 209533 - 209501 - H 79 -12.7 -3.47403 | opp_overlap 209498, overlap 209502 TCAAGGCATAACCAA TCGGCCATTCTCCGA TTC CCGGAGAATTGCCGG ACATGACTTGGAGCA TERM 147 209532 - 209502 - H 82 -16.2 -2.6796 | opp_overlap 209498, overlap 209501 CAAGGCATAACCAAT CGGCCATTCTCCGA TTC CCGGAGAATTGCCG GACATGACTTGGAGC RHE_PD00192 209676 - 210326 + | carbonic anhydrase protein TERM 148 210758 - 210709 - T 88 -13.7 -3.75629 | gap 1, opp_overlap 210700 210719 GAGCTTGAACGCAAA GGCGCGAT-CTGGGTTCAGCCAAC CCT ATTCGCTGAATCGAGTATCGCGCC TGGAGGCATAACGGA RHE_PD00193 211866 - 210934 - | cation efflux transporter protein TERM 149 211804 - 211791 - G 72 -3.8 -4.64676 | TGATCCCGAACAAAA TGCC GATGCA GGCA AGGAGGATGGTAACG RHE_PD00194 212539 - 212084 - | hypothetical protein RHE_PD00195 212943 - 212449 - | insertion sequence transposase protein RHE_PD00196 213212 - 212811 - | insertion sequence transposase protein RHE_PD00197 213878 - 213384 - | iron-molybdenum cofactor processing protein RHE_PD00198 215230 - 213875 - | nitrogenase, NifN protein TERM 150 214421 - 214393 - G 81 -11.8 -3.96291 | opp_overlap 214397, overlap 214397 CAGAAATCTCAGAAA GAAACGAGACGA ACCGG TCGGCTCGTTTC AATCCTGTCAGCGAC TERM 151 214417 - 214397 - G 78 -6.8 -4.56969 | opp_overlap 214397, overlap 214393 AATCTCAGAAAGAAA CGAGACGA ACCGG TCGGCTCG TTTCAATCCTGTCAG TERM 152 214696 - 214721 + g 71 -5.5 -4.25256 | gap 1, overlap 214698 TGTCAGCGACTGTCA GAT-GCCATCCT GGT AGGATCGCAATC TTCTTTTGGTGGCGG TERM 153 215100 - 215080 - G 73 -6.8 -4.25283 | overlap 215083 AGTGCCGGACTAAAA GTACCAGC GCCAA GCTGGTGC AGCCCTGGCTGCCGT RHE_PD00199 216730 - 215240 - | nitrogenase, NifE protein TERM 154 216626 - 216641 + g 76 -6.1 -4.58283 | opp_overlap 216595 CGCCCCGGGGATCAG CGGCT TCGAAC AGCCG TTTTTGCGCGCCTTG TERM 155 216781 - 216754 - R 100 -20.6 -3.27994 | CCAAGTTCAGATGAA GGCGGCCGGCCT CACA AGGCCGACCGCC GCCGCTCCTAGCGGG RHE_PD00200 218330 - 216789 - | nitrogenase, iron-molybdenum beta chain protein TERM 156 218417 - 218453 + r 80 -15.2 -2.70932 | opp_overlap 218405 218419, overlap 218419 CAAGTCCGATGGGAA GAGCCTGGCCTGCC CCTTCCCAA GACAGGCCAGGCTC TCATTCGGCCGCAAC TERM 157 218451 - 218419 - R 85 -15.6 -3.05963 | opp_overlap 218417 218419, overlap 218405 AGTCCGATGGGAAGA GCCTGGCCTGCCCC TTCCC AAGACAGGCCAGGC TCTCATTCGGCCGCA TERM 158 218419 - 218451 + r 73 -12 -2.90075 | opp_overlap 218419 218405, overlap 218417 AGTCCGATGGGAAGA GCCTGGCCTGCC CCTTCCCAA GACAGGCCAGGC TCTCATTCGGCCGCA TERM 159 218460 - 218487 + r 73 -8.2 -4.13561 | opp_overlap 218405 GCCAGGCTCTCATTC GGCCGCAACCGC CTCA GCTGGCGCGGCC TCTTTTTTCCAGGGG RHE_PD00201 219956 - 218454 - | nitrogenase, iron-molybdenum alpha chain protein TERM 160 219052 - 219065 + g 72 -2.3 -4.76041 | AAATTGTATTCCATC CACGG GATG CCGTA TTTTTCCTCCATGTG TERM 161 219998 - 220008 + r 73 -8.2 -4.15044 | overlap 219996 220005 GGTTAGGTCGTCGTC GCCG AAG CGGC TTTCTTGGAAGGACG TERM 162 220005 - 220063 + r 77 -11 -3.61398 | gap 1, opp_overlap 220022, overlap 219996 219998 220022 TCGTCGTCGCCGAAG CGGCT-TTCTTGGAAGGACGCGCTGGC GCAAGG GCCAGCGCGTCCTGTCGACAGCGGCAG TTATTGAGCCGCAAC TERM 163 220045 - 220022 - R 80 -15.3 -2.70932 | opp_overlap 220005 220022 GCTTTCTTGGAAGGA CGCGCTGGC GCAAGG GCCAGCGCG TCCTGTCGACAGCGG TERM 164 220022 - 220045 + r 80 -15.3 -2.62184 | opp_overlap 220022, overlap 220005 GCTTTCTTGGAAGGA CGCGCTGGC GCAAGG GCCAGCGCG TCCTGTCGACAGCGG nifH 220957 - 220064 - | nitrogenase reductase TERM 165 220720 - 220745 + g 71 -13.3 -3.01791 | TGCCTTTGTAGCCGG CCTTGAGCACG TCCT CGAGCTCAAGG TCTTCCACCGAACCT RHE_PD00203 222021 - 221377 - | putative insertion sequence transposase protein RHE_PD00204 222694 - 222083 - | putative insertion sequence transposase truncated protein RHE_PD00205 223110 - 224354 + | hypothetical protein RHE_PD00206 225209 - 224697 - | putative insertion sequence transposase protein RHE_PD00207 225875 - 225225 - | putative insertion sequence transposase protein TERM 166 225473 - 225487 + g 79 -9.2 -4.11216 | CGATTTCTTCGCACA GCCGGG ATA CCTGGC TTTTGGAGATGCCGC RHE_PD00208 226399 - 226713 + | hypothetical protein RHE_PD00209 226819 - 227181 + | putative reverse transcriptase/maturase protein RHE_PD00210 227588 - 227253 - | hypothetical protein RHE_PD00211 227638 - 228045 + | hypothetical protein RHE_PD00213 229029 - 228439 - | hypothetical protein RHE_PD00214 229451 - 229197 - | putative ferredoxin protein RHE_PD00215 230962 - 229472 - | cytochrome P450 monooxygenase protein TERM 167 231177 - 231159 - H 71 -4.5 -4.67982 | overlap 231160 GCGTATCTAACAAAA CCCGACA TCAGG TGCCGGA TGCCATCTATTCAGG TERM 168 231515 - 231497 - H 71 -8.8 -3.86346 | CGATGGCCGCAGAAA GCCCGC TCAAGCG GCGGGC CGAAAATGCCGTCCG TERM 169 231566 - 231546 - H 71 -7.5 -4.0683 | overlap 231547 AAACAAATCCACAAA CTGCCCTGC CTG GCACGGCAA GAGCGTGGGTACGGA TERM 170 231768 - 231805 + G 70 -10.5 -3.54638 | gap 1, overlap 231799 CGTGATTGGCACTTC CGTCGCT-TGCCGTTCCT GCC AGGCGCGGCACGGCGTCG TTTGCGGCGCCTTGT RHE_PD00216 231727 - 232443 + | oxygen-dependent transcriptional regulator protein TERM 171 232457 - 232433 - f 74 -2.7 -4.86731 | opp_overlap 232435, overlap 232434 232436 CGCTCGCAAAGAAAA TCAGCGGGTAA TTA CCACCCGCGTA TTGGAAAGGCCAGCC TERM 172 232984 - 232961 - f 78 -4.4 -5.00196 | TTTCAAACAAGAAAA CGTGCGCGGG TAGA CATACGCACG AGCAGAACCTCAAAC RHE_PD00217 233326 - 233865 + | putative hydroperoxide reductase protein RHE_PD00218 233941 - 235392 + | RNA polymerase factor sigma-54 RHE_PD00219 235917 - 235615 - | hypothetical protein TERM 173 235920 - 235910 - G 82 -3.2 -5.10461 | overlap 235914 GCCATCGAACAAAAA GGAA TCA TCCC ATGATCAAGCTCACA RHE_PD00220 235921 - 236238 + | Fe-S cofactor nitrogenase synthesis protein RHE_PD00221 236261 - 237211 + | nitrogen fixation protein RHE_PD00222 237208 - 238404 + | pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) nifW 238744 - 239127 + | nitrogenase stabilizing/protective protein TERM 174 240083 - 240064 - g 86 -6.3 -5.02476 | overlap 240066 ACACCGCGGAAAAAA CACCGCG CGATCT CGCGGAG GAGTTGATCGCTGGG TERM 175 240081 - 240066 - g 72 -7.5 -4.13963 | overlap 240064 ACCGCGGAAAAAACA CCGCG CGATCT CGCGG AGGAGTTGATCGCTG RHE_PD00224 239304 - 240152 + | electron transfer flavoprotein beta subunit protein TERM 176 240336 - 240372 + G 74 -13 -3.28712 | gap 1, opp_overlap 240347, overlap 240338 240365 GGCGAAGGCCGCAAG C-TCGCCGACAAGCTGG GCGT CCAGCTTGCCGGCGTCG TTCTCGGACCACCGG TERM 177 240338 - 240369 + G 90 -20.2 -2.82623 | opp_overlap 240347, overlap 240336 240365 CGAAGGCCGCAAGCT CGCCGACAAGCTGG GCGT CCAGCTTGCCGGCG TCGTTCTCGGACCAC RHE_PD00225 240168 - 241277 + | electron transfer flavoprotein alpha subunit protein RHE_PD00226 241287 - 242594 + | electron transfer flavoprotein-quinone oxidoreductase protein RHE_PD00227 242607 - 242906 + | ferredoxin-like protein TERM 178 244529 - 244511 - g 83 -11.6 -4.07568 | opp_overlap 244525 CGCTCCTCTGGAAAA CCGACGGG TCG CCCGGCGG CATCACCGTCGATGG RHE_PD00228 243127 - 244815 + | transcriptional regulator NifA protein TERM 179 245209 - 245187 - g 75 -3.3 -4.87626 | overlap 245190 GGCGAAGATCAAAAA CCACCCCTG CTATT CAGAAGAGG CTCACCATTATTTCG RHE_PD00229 245029 - 246507 + | iron-molybdenum cofactor processing protein TERM 180 246668 - 246656 - g 72 -4.1 -4.60041 | ATCGACCCGGAAAAA TGCAC CGA ATGCA AGGGTACCTTCGAAA RHE_PD00230 246542 - 246748 + | ferredoxin protein RHE_PD00231 246813 - 247130 + | nitrogen fixation protein RHE_PD00232 247378 - 248316 + | hypothetical protein RHE_PD00233 249864 - 248761 - | histidinol-phosphate aminotransferase protein TERM 181 249535 - 249515 - G 81 -3.9 -4.98531 | overlap 249517 CGGTTAAAGGAAAAA CCTGGCGAT ATC ATCGCAACG CTATCTCCCGGGTCG RHE_PD00235 251959 - 251180 - | hypothetical protein TERM 182 252216 - 252204 - g 72 -7.7 -4.1413 | AAGAGAGCCTGAAAA CGCTT TCG AAGCG ATACGGGATCAACCA RHE_PD00236 251987 - 253072 + | putative integrase protein TERM 183 253405 - 253387 - T 75 -13.2 -3.14132 | TCGCTCGCCGACGAA TCGCTCGA GCA TCGAGCGA GATCAACGCCAACCA RHE_PD00237 254093 - 253590 - | hypothetical protein TERM 184 254188 - 254202 + rH 85 -4.2 -5.1925 | opp_overlap 254188 254190, overlap 254190 TACAACCGTTTTAAA TACCCA TTT TGGGCA TTTTTTGCGTTATAG TERM 185 254784 - 254800 + rH 100 -7.9 -5.72622 | opp_overlap 254774, overlap 254774 GAAACGCCATGGGAA GGCTCCT TGA GGGGGCC TTTTTTGTTTCTAGG RHE_PD00238 256399 - 256115 - | putative insertion sequence transposase protein RHE_PD00239 256318 - 256725 + | hypothetical protein TERM 186 256967 - 256983 + G 74 -5.1 -4.55491 | overlap 256959 256963 256962 CGCCCTACTGTGCGC CGGCA AAGTTGG TGCCG TTTTCTGCTTCGATG TERM 187 257806 - 257780 - g 71 -5.2 -4.51196 | overlap 257782 GGGAAATCCACAAAA TCCTGTCTATCG CTG CTATAAACAGAA CCTGATGATGGGCTT TERM 188 258094 - 258082 - g 70 -10.5 -3.6445 | opp_overlap 258076 AGAAGAATTGGGAAA CGGCG CTA CGCCG CGTCCGTGATCTGGA RHE_PD00240 256722 - 258791 + | putative insertion sequence ATP-binding protein TERM 189 259600 - 259567 - T 71 -12.4 -2.87931 | opp_overlap 259559 GCCAGTGTGGAGAGA CTGAGAGCGACGCC TTCCCT GGCGTAGCGCTCAG CCTGGCGGTTCAATG RHE_PD00241 260233 - 259610 - | insertion sequence transposase protein RHE_PD00242 260616 - 260293 - | insertion sequence transposase protein RHE_PD00243 261047 - 260640 - | insertion sequence transposase protein TERM 190 262829 - 262813 - g 84 -15.1 -3.28712 | GCCTTGCTTCGATAA CGCGGCG CTA CGCCGCG GCAGACCAACGGTGC RHE_PD00244 262523 - 263452 + | farnesyltranstransferase protein RHE_PD00245 264774 - 263641 - | isopentenyl pyrophosphate isomerase TERM 191 264169 - 264140 - G 72 -13.5 -2.78384 | gap 1 TCTTTGGCCACGATA GGCACGC-CCACGC TAC GCGCGGCGCGAGCC ACCTGCGCCAGTACG RHE_PD00246 265696 - 264794 - | hypothetical protein RHE_PD00247 267246 - 265693 - | hypothetical protein TERM 192 266061 - 266025 - G 78 -14.5 -3.01712 | opp_overlap 266025 GCTGCGCCTGCAACA GCGCCGCCAGCG-CGCG CTCGT CGCGCCACTGG-GGCGC GCCTTGCGCGAGCGC TERM 193 266815 - 266781 - G 70 -12 -3.17075 | overlap 266808 CCGTCCCCAACTTAA CCAGGCACGCTTGCCG CAA CGGCAACAGCGCCGGG TAGCGCGGAAACACC TERM 194 267757 - 267725 - R 77 -9.7 -3.88498 | GCGGTACAGAGTAAA GCGCGGCATCCTCCG CGA CGGCGCATAGCGCGC CAATGCCTATGGACG TERM 195 267956 - 267898 - R 81 -15.2 -2.75498 | gap 2, overlap 267894 267897 TACCTGACAGAGAAT GC-CGCG-GCGAGCGGCGAGCCGCCG CGGTGCTGC CGGCGTCGCACCGCGCGCGCGCGCGC CGAGTGCAGCAATGC RHE_PD00249 269365 - 268022 - | cytochrome P450 monooxygenase protein RHE_PD00250 270207 - 269365 - | oxidoreductase protein RHE_PD00251 271795 - 270194 - | cytochrome P450 monooxygenase protein RHE_PD00252 273081 - 271801 - | cytochrome p450 monooxygenase protein TERM 196 272625 - 272602 - G 83 -7.4 -4.57073 | gap 1, opp_overlap 272619 GAGCCCTGCGAAAAA GGCGTGTTCCT CGA AGGG-CACGCC CATCAGCGCGCTGAT TERM 197 275409 - 275428 + r 80 -11.4 -3.82484 | GCAGCAGGTCGTTAT CGCGTCGG TCTC CCGATGCG TTTGAATTATGATGT RHE_PD00255 276866 - 275607 - | insertion sequence transposase protein TERM 198 276921 - 276971 + r 78 -14.7 -2.70932 | TGAGACCTGAGGCCT GGCTATGACCACCTGCTTCGCCT GATGG GGGCTACGCAGCTGGTCAAAGCC TCATTCAACGCAGAC RHE_PD00257 277758 - 277387 - | polysaccharide repressor protein RHE_PD00258 278647 - 279243 + | polysaccharide inhibition protein TERM 199 279625 - 279602 - f 81 -13.8 -3.28712 | TCCGTTTGGCGATAA CTGGGAGGCG GGAT CGCCTCCCCG CTGCACGGGCGATCG RHE_PD00259 279761 - 280471 + | nitrogen fixation protein TERM 200 281595 - 281570 - g 71 -13.3 -3.01791 | AGGTTCGGTGGAAGA CCTTGAGCTCG AGGA CGTGCTCAAGG CCGGCTACAAAGGCA nifH 281358 - 282251 + | nitrogenase reductase TERM 201 282310 - 282252 - f 77 -11 -3.61398 | gap 1, opp_overlap 282270, overlap 282270 282307 282308 GTTGCGGCTCAATAA CTGCCGCTGTCGACAGGACGCGCTGGC CCTTGC GCCAGCGCGTCCTTCCAAGAA-AGCCG CTTCGGCGACGACGA TERM 202 282270 - 282293 + F 80 -15.3 -2.70932 | opp_overlap 282252 282270 CCGCTGTCGACAGGA CGCGCTGGC CCTTGC GCCAGCGCG TCCTTCCAAGAAAGC TERM 203 282293 - 282270 - f 80 -15.3 -2.62184 | opp_overlap 282270, overlap 282252 CCGCTGTCGACAGGA CGCGCTGGC CCTTGC GCCAGCGCG TCCTTCCAAGAAAGC TERM 204 282317 - 282307 - f 73 -8.2 -4.15044 | overlap 282252 282308 CGTCCTTCCAAGAAA GCCG CTT CGGC GACGACGACCTAACC TERM 205 282451 - 282437 - f 73 -12.8 -2.72626 | overlap 282436 CAATATCCAGACAAG GCGGCG AAG CGCCGC AAGAAGCACCTCAGC TERM 206 283349 - 283359 + GF 79 -8.2 -4.36127 | overlap 283335 283334 TGCGATGCGTCCCGA CCGC CTC GCGG TTTTCGGTTATTCCC TERM 207 283499 - 283510 + GF 72 -4.4 -4.54727 | opp_overlap 283499, overlap 283493 AGGCTATCTGCAAAT TGGT CTCG ACCA TTTTGCTTTGCCGGA RHE_PD00262 282597 - 283991 + | coproporphyrinogen III oxidase RHE_PD00263 283945 - 284397 + | hypothetical protein RHE_PD00264 285081 - 284542 - | hypothetical protein RHE_PD00265 285938 - 285210 - | hypothetical protein TERM 208 285502 - 285518 + g 78 -3.6 -5.00616 | opp_overlap 285498, overlap 285498 285506 GCGTCAGCTAACGCG GTCTCG AGTGC CGCGAC TTTTTTGGCGCGCGG RHE_PD00266 286060 - 286476 + | hypothetical protein RHE_PD00267 286871 - 287122 + | hypothetical protein TERM 209 287625 - 287656 + G 72 -2.2 -4.8048 | gap 1, overlap 287626 CACGTGTGTCGTTCG TGAGC-CACCATATG TCG CACGCGGTGAGCTCG TTTTTCATGTCGGGC TERM 210 288854 - 288864 + G 77 -2.4 -5.00616 | overlap 288842 GATTCGGTTAGGGAT GCCG TAA CGAC TTTTTTGACGACCGA RHE_PD00268 287237 - 289294 + | carbamoyltransferase protein RHE_PD00269 289489 - 289884 + | nodulation protein TERM 211 290354 - 290327 - g 81 -7.6 -4.46212 | opp_overlap 290326 290335 GGCTTTACGACAAAA GTCCATGCCCGC GCAG ACGGTCAGGGAC GTCCTCTCGGCTTTG RHE_PD00270 289944 - 290375 + | IS4 insertion sequence transposase protein RHE_PD00271 290379 - 290729 + | IS4 insertion sequence transposase protein RHE_PD00272 291037 - 290726 - | hypothetical protein RHE_PD00273 291254 - 291556 + | insertion sequence transposase protein RHE_PD00274 292583 - 292915 + | nodulation protein TERM 212 293506 - 293523 + G 72 -4 -4.58303 | overlap 293507 CTACGATGATTACTT GCGGCG CGGTGA CGCCGA TTTTCTCATCTTTCC RHE_PD00275 293072 - 294022 + | LysR family NOD transcriptional regulator protein RHE_PD00276 294791 - 294375 - | hypothetical protein RHE_PD00277 295786 - 294998 - | nod factor ABC transporter, permease protein RHE_PD00278 296698 - 295790 - | nodulation factor exporter subunit NodI RHE_PD00280 298077 - 297460 - | methyltransferase nodulation protein TERM 213 297654 - 297639 - G 72 -7.6 -4.13767 | GCGCCGATCCGAAAA CCAGAT ATCC ATCTGG CGCAAGCATCCGCAC RHE_PD00281 299424 - 298093 - | N-acetylglucosaminyltransferase protein RHE_PD00282 300091 - 299432 - | chitooligosacharide deacetylase protein TERM 214 299762 - 299772 + g 74 -2.4 -4.90455 | overlap 299766 299769 CCGCACCACCGCCTG AGGC GAC GCCA TTTTTATGGCTCTGT TERM 215 300052 - 300025 - G 81 -7.6 -4.46233 | CGAACGTCAAATAAA CGCTGTGACGAC CAGT GCCGTCATCGCG CTCACCGTGCACTTC TERM 216 300245 - 300230 - H 74 -10.4 -3.63744 | opp_overlap 300229 300244, overlap 300228 CCGTTTCCCAAAATA GCGGTC ACCA GACCGC CTCGTTTGAATCTGT RHE_PD00283 300251 - 300586 + | hypothetical protein RHE_PD00284 301255 - 300914 - | hypothetical protein RHE_PD00285 301719 - 302705 + | fucosyl transferase protein RHE_PD00287 303645 - 303001 - | hypothetical protein RHE_PD00286 302890 - 303171 + | hypothetical protein RHE_PD00288 304520 - 303855 - | Crp/Fnr family transcriptional regulator TERM 217 304428 - 304451 + g 75 -11.8 -3.63078 | gap 1, opp_overlap 304435, overlap 304431 CGGTGCGAAGATCTG GAACTGAGCCG TGT CGGC-CAGTTC TTCTATCCTTGCTTT RHE_PD00289 304710 - 304552 - | precursor of a membrane (nitrogen fixation)protein coupled to cation pump RHE_PD00290 306977 - 304707 - | cation transport ATPase protein TERM 218 304850 - 304807 - G 76 -13.8 -3.19642 | gap 1 ACGATGATCGACGAA GTCGACATGGCCACCGCCGCT ATC AGCGGCGTTG-CCAGGCCGGC GATTGCGATCGGTAC TERM 219 305401 - 305385 - G 73 -11.5 -3.64703 | GGTTCCGCAGGCAAA GGCCCGG TTG CCGAGCC GATAGAAGTCCGCTC TERM 220 305712 - 305696 - G 70 -7.9 -4.07568 | TGCCCCTGCGGAAAA GTTCGCC GGC GGCGACC ACCTGGACCACCGGT TERM 221 306212 - 306257 + g 72 -3.8 -4.58395 | overlap 306213 GCATCATCAGCTGCG CCCCGCGCGGCG-CCAGTCTGG CAAG CCCG-TTGATCGCGGCGCGGGC TTTTTCCCGCATCAC TERM 222 306797 - 306809 + g 76 -6.2 -4.58395 | opp_overlap 306797 TCCTGACGAACGCAA GCGC CGACA GCGC TTTTTCGAGGGTCAA RHE_PD00291 307459 - 306974 - | cation pump membrane (nitrogen fixation)protein RHE_PD00292 309030 - 307456 - | ferredoxin oxidase protein TERM 223 309147 - 309120 - R 100 -16.3 -4.3208 | overlap 309138 GTGCAGAAGCGAAAA GGCCACGCCCC AGAGTA AGGGCGTGGCC GGAGGACAGCGGCGG RHE_PD00293 310258 - 309395 - | cytochrome C oxidase, fixP chain (cbb3-type subunit III) protein RHE_PD00294 310412 - 310260 - | cytochrome C oxidase, fixQ chain protein RHE_PD00295 311155 - 310421 - | cytochrome C oxidase, fixO chain protein TERM 224 310995 - 311017 + g 80 -5.5 -4.70266 | overlap 310989 GCGAGCTCTAGCGGC GTGTAGGGC CGCAT GCCTTCCAC TTTTTCGATCGTGTT RHE_PD00296 312786 - 311164 - | cytochrome C oxidase, fixN chain protein TERM 225 312807 - 312827 + H 71 -8.1 -3.95219 | opp_overlap 312812, overlap 312823 CGTCTCCAGTGCGCA GACGACCGC CTC GCGGCCGGC TTTCTCGGATTTCGA RHE_PD00298 314052 - 314495 + | pseudoazurin blue-copper protein RHE_PD00299 314574 - 315065 + | hypothetical protein RHE_PD00300 316813 - 315461 - | coproporphyrinogen III oxidase RHE_PD00301 317991 - 317536 - | bacteroid protein S RHE_PD00302 319183 - 318866 - | electron transfer ferredoxin B protein TERM 226 319005 - 319029 + g 73 -10.7 -3.55622 | CCATCGAAGTCTTCC TCCTCGTCGTC GCA GATGCCGAGGA TTTCACCCGCTTCAC RHE_PD00303 319383 - 319180 - | hypothetical protein TERM 227 319336 - 319354 + g 78 -6.6 -4.63527 | overlap 319319 CGCAGCGGCGGCGCG GGACTGCA GCT TGCGGACC TTTTTCAGCTGCTCC RHE_PD00304 319896 - 319408 - | hypothetical protein TERM 228 320128 - 320143 + r 75 -6.1 -4.58283 | opp_overlap 320097 CGCCCCGGGGATCAG CGGCT TCGAAC AGCCG TTTTTGCGCGCCTTG TERM 229 320283 - 320256 - R 100 -20.6 -3.27994 | CCAAGTTCAGATGAA GGCGGCCGGCCT CACA AGGCCGACCGCC GCCGCTCCTAGCGGG RHE_PD00306 321886 - 320291 - | nitrogenase, iron-molybdenum beta chain protein TERM 230 321919 - 321955 + r 80 -15.2 -2.70932 | opp_overlap 321907 321921, overlap 321921 CAAGTCCGATGGGAA GAGCCTGGCCTGCC CCTTCCCAA GACAGGCCAGGCTC TCATTCGGCCGCAAC TERM 231 321953 - 321921 - R 85 -15.6 -3.05963 | opp_overlap 321919 321921, overlap 321907 AGTCCGATGGGAAGA GCCTGGCCTGCCCC TTCCC AAGACAGGCCAGGC TCTCATTCGGCCGCA TERM 232 321921 - 321953 + r 73 -12 -2.90075 | opp_overlap 321921 321907, overlap 321919 AGTCCGATGGGAAGA GCCTGGCCTGCC CCTTCCCAA GACAGGCCAGGC TCTCATTCGGCCGCA TERM 233 321962 - 321989 + r 73 -8.2 -4.13561 | opp_overlap 321907 GCCAGGCTCTCATTC GGCCGCAACCGC CTCA GCTGGCGCGGCC TCTTTTTTCCAGGGG RHE_PD00307 323446 - 321956 - | nitrogenase, iron-molybdenum alpha chain protein TERM 234 322554 - 322567 + g 72 -2.3 -4.76041 | AAATTGTATTCCATC CACGG GATG CCGTA TTTTTCCTCCATGTG TERM 235 323488 - 323498 + r 73 -8.2 -4.15044 | overlap 323486 323495 GGTTAGGTCGTCGTC GCCG AAG CGGC TTTCTTGGAAGGACG TERM 236 323495 - 323553 + r 77 -11 -3.61398 | gap 1, opp_overlap 323512, overlap 323486 323488 323512 TCGTCGTCGCCGAAG CGGCT-TTCTTGGAAGGACGCGCTGGC GCAAGG GCCAGCGCGTCCTGTCGACAGCGGCAG TTATTGAGCCGCAAC TERM 237 323535 - 323512 - R 80 -15.3 -2.70932 | opp_overlap 323495 323512 GCTTTCTTGGAAGGA CGCGCTGGC GCAAGG GCCAGCGCG TCCTGTCGACAGCGG TERM 238 323512 - 323535 + r 80 -15.3 -2.62184 | opp_overlap 323512, overlap 323495 GCTTTCTTGGAAGGA CGCGCTGGC GCAAGG GCCAGCGCG TCCTGTCGACAGCGG nifH 324447 - 323554 - | nitrogenase reductase TERM 239 324210 - 324235 + g 71 -13.3 -3.01791 | TGCCTTTGTAGCCGG CCTTGAGCACG TCCT CGAGCTCAAGG TCTTCCACCGAACCT RHE_PD00310 327329 - 326742 - | acyltransferase NodA RHE_PD00311 328046 - 327627 - | hypothetical protein TERM 240 327748 - 327765 + g 77 -2.5 -5.04987 | opp_overlap 327748 AAAGTCGTCGAACGA CCCGACC TGGC GGAGGGG TTTTTTCGGAATGTT TERM 241 328075 - 328053 - H 77 -9.9 -3.88498 | gap 1, opp_overlap 328073 CCCGGACACAGCAAA CGCCTC-CCA GGAC TGGCGAGGCG GCCGCGAGATCGCAA RHE_PD00312 328267 - 329181 + | hypothetical protein RHE_PD00313 329443 - 329709 + | insertion sequence transposase protein TERM 242 329738 - 329724 - f 75 -11.4 -3.53012 | GGGCCTGCCGCCAAA CGCGAC GCC GTCGCG CATCTGAAGACCGTC TERM 243 330514 - 330494 - g 95 -10.4 -4.52589 | overlap 330495 CGCTTGGATACAAAA CCCCGGCA GACTT TGCCGGGA CCATCGCCGCAACCG TERM 244 330513 - 330495 - g 72 -11.7 -3.31232 | overlap 330494 GCTTGGATACAAAAC CCCGGCA GACTT TGCCGGG ACCATCGCCGCAACC RHE_PD00314 329872 - 330633 + | insertion sequence transposase protein TERM 245 332115 - 332125 + G 78 -6.8 -4.56597 | ATAGACGCCTTTTTC GACG TTG CGTC TTTTTCAAGGGCAGA RHE_PD00315 330801 - 332390 + | methionyl-tRNA synthetase RHE_PD00316 333056 - 334012 + | LysR family NOD transcriptional regulator protein RHE_PD00317 334339 - 333992 - | hypothetical protein TERM 246 334295 - 334252 - G 79 -15.3 -2.88579 | gap 1, opp_overlap 334289 334291 CGAAGGTGCTAGACA GCACGTCGCGCAATCGTCCG AAGGG CGGCCGATCG-GCGACGGGC GTAGCGCTCAGCTTC RHE_PD00318 335329 - 334421 - | LysR family NOD transcriptional regulator protein RHE_PD00319 336506 - 335481 - | luciferase protein TERM 247 336163 - 336141 - G 73 -3.3 -4.75308 | ATCAATACCGAAAAA GCTCCATTC GATTG GTAAGGAGC CGCGCCCCATGCCCA RHE_PD00320 337407 - 337673 + | insertion sequence transposase protein RHE_PD00321 338073 - 337687 - | insertion sequence transposase protein TERM 248 338094 - 338112 + r 80 -5.2 -5.00616 | overlap 338094 CGCGGGAGCGGCCAA GGGCTTGA TCT TCAGCCCC TTTTTTGCGCCGGCA RHE_PD00322 338447 - 338070 - | insertion sequence transposase protein RHE_PD00323 338686 - 339000 + | insertion sequence transposase protein RHE_PD00324 339674 - 339153 - | hypothetical protein RHE_PD00325 340551 - 339760 - | hypothetical protein TERM 249 340566 - 340586 + H 76 -5.3 -4.72986 | opp_overlap 340556, overlap 340567 AGAGACCGACCTTCC ATCGGAAGC GAA GCTCCCGAA TTTTTGATAGCACTC TERM 250 340603 - 340622 + H 91 -5.8 -5.47821 | overlap 340605 TTTTGATAGCACTCG TAGTTACA CTTG TGTAACTG TTTTTTTAAATGGAT TERM 251 340605 - 340620 + H 72 -6.2 -4.37763 | overlap 340603 TTGATAGCACTCGTA GTTACA CTTG TGTAAC TGTTTTTTTAAATGG TERM 252 340949 - 340933 - g 81 -3.7 -5.08088 | opp_overlap 340934, overlap 340934 AATTCCGAAGAAAAA CTATTCC TGA GGAATAT TCTTGGATTGATGCT RHE_PD00326 340810 - 341352 + | hypothetical protein RHE_PD00327 341918 - 342115 + | hypothetical protein RHE_PD00328 342105 - 344168 + | insertion sequence transposase protein RHE_PD00329 344911 - 344180 - | putative insertion sequence transposase protein RHE_PD00330 345210 - 344944 - | insertion sequence transposase protein TERM 253 345399 - 345358 - H 77 -7.7 -4.42851 | CCAAGAAATTGAAAA GGGGCCAGCGAGGAGCGCC TTTT GGCTCGCATCGCCGGGTCC GCGATCAAGGCCCTC TERM 254 346180 - 346162 - g 70 -13.2 -2.89564 | opp_overlap 346162, overlap 346164 GGCCGATGCCACAGA CACCCACA CCT TGTGGGTG TTAATCCGTGTTCGA TERM 255 346162 - 346180 + G 73 -13.2 -3.2218 | opp_overlap 346162 346164 GGCCGATGCCACAGA CACCCACA CCT TGTGGGTG TTAATCCGTGTTCGA RHE_PD00331 345848 - 346579 + | insertion sequence transposase protein RHE_PD00332 346905 - 348086 + | HlyD family protein secretion protein TERM 256 348936 - 348922 - g 73 -8.6 -4.08945 | ACGACGCTGTGAAAA TCAGGA GCT TCCTGA ACGACGTTTCGATAA RHE_PD00333 348114 - 350261 + | bacteriocin/lantibiotic ABC transporter, ATP-binding protein RHE_PD00334 350289 - 350852 + | putative insertion sequence transposase protein RHE_PD00335 351707 - 351222 - | hypothetical protein RHE_PD00336 352147 - 351779 - | hypothetical protein RHE_PD00337 352338 - 352643 + | hypothetical protein TERM 257 353029 - 353068 + T 85 -12.2 -3.99405 | gap 1, overlap 352994 353021 352991 353058 CGCTGAGGCGATACT CGCTGTTTCCGGTCATTGC TTA GCACAGGCCGGAAA-AGCG TTTCTGGTACCTTAG RHE_PD00338 354564 - 353386 - | nodulation acetyltransferase protein RHE_PD00339 356145 - 355372 - | water channel protein RHE_PD00340 356905 - 357501 + | hypothetical protein RHE_PD00341 357788 - 358342 + | adenine phosphoribosyltransferase TERM 258 359589 - 359565 - g 76 -11.4 -3.71873 | opp_overlap 359564 359553 359567 GGAGTTATAGCGAAA GAGCGTCGGC CCGCC GCCGAAGCTC CTGTCTATAACTTCT RHE_PD00342 358374 - 359642 + | putative biosynthetic heme protein TERM 259 360131 - 360119 - g 70 -10.5 -3.63305 | CACACAATCGGCAAA GGCGG TTA CCGCC GCATTCGCCAAACTT RHE_PD00343 359751 - 360215 + | hypothetical protein RHE_PD00344 360221 - 360550 + | hypothetical protein RHE_PD00345 360761 - 361144 + | insertion sequence transposase protein RHE_PD00346 361141 - 361485 + | insertion sequence transposase protein TERM 260 361550 - 361530 - f 71 -6.8 -4.34771 | GAAAAGGCAGGAAAA CCGGAGCA AATTG TGCTCTGG TAGGCCTCATGACGC RHE_PD00347 361559 - 363151 + | insertion sequence transposase protein TERM 261 363535 - 363547 + G 72 -7.7 -4.11484 | ATGTTCGATCTCGGC TACCG GCA CGGTA TTTTCGACCCTTCAA RHE_PD00348 363202 - 364200 + | hypothetical protein RHE_PD00349 364203 - 365144 + | ribose-phosphate pyrophosphokinase protein RHE_PD00350 366185 - 365151 - | putative L-iditol 2-dehydrogenase protein TERM 262 367636 - 367590 - H 95 -18.9 -3.02461 | gap 1, opp_overlap 367584 GAATCGGCTCTAATA GCTAGTGGCGGAAC-TTTAGCG CTTT CGCGAAAAGTTCCGCCACTTGC AGGAAATGGATTTTG TERM 263 368754 - 368784 + G 72 -14.1 -2.79133 | gap 1, opp_overlap 368745 368744 TCAAACCCTCTTTGA GGTTGAGCGCG-GA CAGT TCACGCGCTCGACC TATGATCGGGCCTTA RHE_PD00352 367654 - 368868 + | plasmid partitioning protein RepAd TERM 264 368868 - 368848 - f 83 -3.9 -5.27477 | overlap 368849 ACTCTAATCAAAAAA GCATGGGGT AGA ACCACATGA GTCGGAAGCACCTCC TERM 265 369610 - 369588 - g 74 -9.1 -3.86015 | GAGCTGGTTGAGAAA GCATCGCCT CCGGC AGGCGCTGC GAAATATGCTGCCTC RHE_PD00353 368952 - 369890 + | plasmid partitioning protein RepBd TERM 266 369936 - 369905 - f 100 -10.8 -5.08255 | opp_overlap 369905 ACCCGCAAAAGAAAA GAGCTCCCTCAACG TCGC CGTCGTGGAAGCCC TTCTGTCTCTGTAGC TERM 267 370806 - 370786 - g 72 -11.9 -3.28146 | opp_overlap 370779, overlap 370779 AAAAATTAGCACCAA TGCTGCTCA TAT CGAGCAGCA CATACAGAATTCAAA RHE_PD00354 370046 - 371254 + | plasmid replication protein RepCd SEQUENCE gi|86355669|ref|NC_007761.1| Rhizobium etli CFN 42, complete genome (length 4381608) TERM 1 935 - 907 - g 71 -11.1 -3.44051 | overlap 908 GCCGGATGATTACAA CGATGCCGATG TCGTCAT CATCGGCATCA GCCGGACATCGAAGA RHE_CH00001 473 - 1294 + | hypothetical protein TERM 2 1655 - 1686 + G 83 -9.3 -4.3739 | opp_overlap 1657, overlap 1657 GACTCACCGGCTGAA CAGCGCCATCGTG CTCGTC CGCGACGGCGCCG TTTTGTGGGAGCATG RHE_CH00002 1326 - 1925 + | Maf-like protein aroE 1918 - 2775 + | shikimate 5-dehydrogenase TERM 3 3276 - 3264 - g 95 -10.5 -4.59773 | opp_overlap 3263 3264 CCGGATGCGGAAAAA CGGCG CCG CGCCG ATTATCTGGTCGACA coaE 2775 - 3386 + | dephospho-CoA kinase protein dnaQ 3379 - 4101 + | DNA polymerase III subunit epsilon TERM 4 4125 - 4105 - T 100 -14 -4.27584 | opp_overlap 4099 AGCTCGAATTGAAAA TGCCCGGG ACCGG CCCGGGCA TCCGCATTTCAGAAT secB 4636 - 4154 - | preprotein translocase subunit SecB fxsA 5242 - 4736 - | FxsA TERM 5 5525 - 5506 - g 71 -11.4 -3.42078 | TATAGCCCACGAGAA GCGGCTCC GCCC GAAGCCGC TGAGGCCGGTAAGGT RHE_CH00008 5374 - 6078 + | putative translocase transmembrane protein TERM 6 6128 - 6155 + F 95 -12 -4.63527 | TTCGATCGTTTGGAA GGCTGGAAGGAT GATG ATCCCTCCGGCC TTTTTGAAATGATGC TERM 7 6900 - 6930 + G 71 -13.2 -3.06183 | overlap 6899 AGGCCGGTCCGATCG CGGCCGCCAAGGTG CCG CTTCTTGCCGGCCG TTCGCTGGCCGTCGA RHE_CH00009 6164 - 7192 + | lytic murein transglycosylase A protein RHE_CH00010 7264 - 7761 + | Smr/MutS family DNA repair protein RHE_CH00011 7821 - 8135 + | putative transcriptional regulator protein TERM 8 9660 - 9626 - g 76 -8.7 -4.13767 | gap 2, overlap 9634 CCGGTCACGCGAAAA CCAGGCAATCCTGCCGC TGC GCGGCAAGAT--CCTGA ACGTCGAGCGCGCCC TERM 9 9654 - 9634 - g 73 -13.3 -3.19038 | overlap 9626 GCGAAAACCAGGCAA TCCTGCCGC TGC GCGGCAAGA TCCTGAACGTCGAGC gyrB 8271 - 10706 + | DNA gyrase subunit B TERM 10 10726 - 10751 + T 93 -10.3 -4.58076 | opp_overlap 10728, overlap 10727 10728 TATGCCTTCAACAAA AACCCGCCGTC CCCG GACGGCGGGGC TTTTGTCTAGCTTAT TERM 11 10727 - 10750 + T 81 -13.8 -3.33761 | opp_overlap 10728, overlap 10726 10728 ATGCCTTCAACAAAA ACCCGCCGTC CCCG GACGGCGGGG CTTTTGTCTAGCTTA TERM 12 10728 - 10749 + T 86 -17.3 -2.59534 | opp_overlap 10728, overlap 10727 10726 TGCCTTCAACAAAAA CCCGCCGTC CCCG GACGGCGGG GCTTTTGTCTAGCTT TERM 13 10749 - 10728 - T 100 -17.3 -5.06414 | opp_overlap 10728 10727 10726 TGCCTTCAACAAAAA CCCGCCGTC CCCG GACGGCGGG GCTTTTGTCTAGCTT RHE_CH00013 11371 - 10772 - | oxidoreductase protein RHE_CH00014 11692 - 11408 - | hypothetical protein TERM 14 13189 - 13169 - g 77 -12.5 -3.5393 | opp_overlap 13163 13160 13159 ACCATGCCGCCGAAA CGGGCGCCA CCG TGCCGCCCG AGCCGGTGATCTTCA RHE_CH00016 12913 - 13755 + | bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase TERM 15 13922 - 13954 + F 72 -10 -3.59658 | gap 1, overlap 13920 GGATGTCTATCAGTC GGCGTCATCTTT-TC GATG GAGAAAGGTGGCGCC TCTTATGTTTTATCA TERM 16 14183 - 14213 + G 76 -8.2 -4.12198 | opp_overlap 14195 CGATCAGACAGTTTC GGTTCGCGAAGAGA TCG TCTGGTCGCGATCC TTTTGCAACCTTCTG RHE_CH00017 13959 - 15236 + | intracellular PHB depolymerase protein RHE_CH00018 15300 - 15815 + | hypothetical protein TERM 17 15936 - 15956 + F 100 -12.6 -4.72846 | opp_overlap 15933 GCGATGAAATCATGG CCGGCATC TCACC GATGCCGG TTTTTCCATGTCTGC RHE_CH00019 16022 - 16780 + | putative zinc metallopeptidase protein trpF 16856 - 17524 + | N-(5'-phosphoribosyl)anthranilate isomerase TERM 18 17720 - 17734 + G 81 -7 -4.72007 | opp_overlap 17717 GCGCGCACTATATCG GCCGGC CGA GCCCGC TTTATTTTGCTGAAC trpB 17527 - 18747 + | tryptophan synthase subunit beta trpA 18751 - 19590 + | tryptophan synthase subunit alpha accD 19630 - 20535 + | acetyl-CoA carboxylase subunit beta TERM 19 20639 - 20617 - f 78 -6.2 -4.7173 | opp_overlap 20616 20624, overlap 20621 CAGGAGATCGAAAAA CTCATGGGAT TGC ATCCCAAGGG GTTCGATCTGTCTCT TERM 20 21828 - 21815 - g 80 -5.2 -4.91712 | opp_overlap 21824 TGGAAGCGATAAAAA CGGC ACTCCA GCCG GCGGCACTGCCGCCC folC 20620 - 21915 + | bifunctional folylpolyglutamate synthase/dihydrofolate syntase TERM 21 21929 - 21946 + T 100 -12.7 -4.74132 | opp_overlap 21929 AGGCAGACGAAAAAA GCCCGGT CGAG ACCGGGC TTTTTCATGGGATAT TERM 22 21946 - 21929 - T 100 -12.7 -5.22312 | opp_overlap 21929 AGGCAGACGAAAAAA GCCCGGT CGAG ACCGGGC TTTTTCATGGGATAT trxA1 22296 - 21976 - | thioredoxin protein RHE_CH00026 25923 - 22372 - | nuclease/helicase protein, ATP dependent RHE_CH00027 29110 - 25916 - | hypothetical protein RHE_CH00028 29846 - 29115 - | nucleotidyltransferase protein RHE_CH00029 31374 - 29860 - | hypothetical protein RHE_CH00030 33953 - 31371 - | two-component sensor histidine kinase protein TERM 23 33766 - 33802 + g 70 -7.7 -4.07568 | opp_overlap 33761 33762 TGCGCCAGAACCGGC CGCGCCAGGGCGGCAAG CGC CGTGCCGGCCACGCACG TTTTCAGGAAGCGCG TERM 24 33917 - 33936 + g 78 -4.9 -4.74103 | overlap 33919 CGCGAGGGCCGTCAT CCGCCTG ACCGGG CAGGCTG TTTTTCACTTCCGAC TERM 25 34129 - 34098 - R 100 -13.8 -5.07567 | opp_overlap 34101, overlap 34101 GGAGAGGCCAAAAAA TAAGCCGCGACATT TGTC AATGCCGCGGCTTC TACATCTTGTGGATA TERM 26 34101 - 34126 + r 82 -13.3 -3.43961 | opp_overlap 34101 34098 GAGGCCAAAAAATAA GCCGCGACATT TGTC AATGCCGCGGC TTCTACATCTTGTGG TERM 27 34126 - 34101 - R 100 -15.5 -4.63089 | opp_overlap 34101, overlap 34098 GAGGCCAAAAAATAA GCCGCGACATT TGTC AATGCCGCGGC TTCTACATCTTGTGG ahcY 35557 - 34157 - | S-adenosyl-L-homocysteine hydrolase TERM 28 35274 - 35263 - G 72 -7.2 -4.11216 | overlap 35264 CCTTGATGGCGAAAA CCGG AACG CCGG CCGCGGCGATCGCCG RHE_CH00032 35977 - 35702 - | phosphocarrier protein HPr protein (component of the phosphoenolpyruvate-dependent sugarphosphotransferase system) RHE_CH00033 36388 - 35987 - | protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (component of thephosphoenolpyruvate-dependent sugar phosphotransferasesystem) RHE_CH00034 36898 - 36539 - | hypothetical protein chvG 38820 - 36985 - | two-component sensor histidine kinase protein TERM 29 37604 - 37660 + g 83 -7.8 -4.63527 | gap 1, overlap 37605 AGCCGTTTCTTCGAA TCCTCCGACCTCGC-GAGCGGCAGTGT TTCG ACGGCGCTGCGCAGCGAGGTCAGCGGG TTTTTGAGCTCGTGG chvI 39607 - 38852 - | two-component response regulator protein TERM 30 40946 - 40934 - g 70 -10.5 -3.54459 | CGAATGCCTCGGAAA CCGGC CGG GCCGG GCATCCGAAGACGAT pckA 39928 - 41538 + | phosphoenolpyruvate carboxykinase TERM 31 41567 - 41589 + F 75 -6.3 -4.56607 | gap 1, opp_overlap 41567, overlap 41560 CTGATTCACGTGAAA CCCGG-CATT GCAG GATGGCCGGG TTTTCTCGTTGATGG TERM 32 42013 - 41991 - g 73 -6.3 -4.34263 | gap 1, overlap 41992 41993 GCGCAAGAAGACAAA GC-CGACCAA AGGT TCGGTCGAGC GCCGTCTGAAGGAAA TERM 33 42044 - 42031 - g 77 -3.8 -4.8622 | CGTCTGAAGGAAAAA TCCG GCCGCT CGGA AGTCAAGAAAATGCG TERM 34 42081 - 42056 - g 100 -10.3 -4.72029 | overlap 42058 CGGAAGTCAAGAAAA TGCGCGGCCGC CCCG GCGGCGGCGAA TGACATGCCCGAGCT RHE_CH00038 41647 - 42084 + | hypothetical protein TERM 35 42684 - 42655 - g 73 -10.7 -3.61715 | gap 1, opp_overlap 42657 GACGCTGTTGAAGAA CGGCGGCCGCATCA ATC TGACGCTGC-GCCG CGTTCGTCCGTGAAT alkB 42086 - 42697 + | alkylated DNA repair protein coaA 43707 - 42712 - | pantothenate kinase hisE 44027 - 43704 - | phosphoribosyl-ATP pyrophosphatase hisF 44832 - 44044 - | imidazole glycerol phosphate synthase subunit HisF hisA 45579 - 44833 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 36 45310 - 45355 + g 72 -2.6 -4.74801 | gap 3, overlap 45312 GCGCGACAGCCAGGC TTCGATGTGG-TCGAGCGTGCGG ATG CCGC-CGC-CGAGCTGCACTGGA TTTTTAGTCGCCTTC RHE_CH00044 46143 - 45586 - | hypothetical protein hisH 47025 - 46375 - | imidazole glycerol phosphate synthase subunit HisH RHE_CH00046 47513 - 47028 - | hypothetical protein hisB 48143 - 47535 - | imidazoleglycerol-phosphate dehydratase TERM 37 48765 - 48745 - g 71 -8.2 -3.9534 | overlap 48758 ATGGATACCGACAAA CCGGCCGA AGAGA TCGCCCGG CGCGCCCTCGATATC hslV 48319 - 48846 + | ATP-dependent protease peptidase subunit TERM 38 48936 - 48904 - f 74 -11.1 -3.30474 | CGTGACAATGATGAA TTGCGGCCGGGCGCC GAT GGCTCCGGACCGCCA GGAGAATGATACGCA TERM 39 49063 - 49024 - g 70 -10.6 -3.62572 | gap 1, overlap 49025 CAGCATGATGCCAAA CGCGCCGTC-GCGATTGCG CTG CGCAACCGCTGGCGTCGCC AGCAGCTCGACCCGA TERM 40 49062 - 49025 - g 72 -14.1 -2.77222 | gap 1, overlap 49024 AGCATGATGCCAAAC GCGCCGTC-GCGATTGCG CTG CGCAACCGCTGGCGTCGC CAGCAGCTCGACCCG hslU 48952 - 50259 + | ATP-dependent protease ATP-binding subunit TERM 41 50328 - 50356 + F 90 -8.1 -5.07652 | CTCGACTATCGACAG CGGGCCTTTTC CTTTTTA GTGAAGGCCCG TTTTGTTTTCCGCCG RHE_CH00050 50448 - 51395 + | hypothetical protein RHE_CH00051 51444 - 52856 + | cytochrome p450 protein glcB 52942 - 55113 + | malate synthase G TERM 42 55152 - 55126 - T 100 -15.9 -4.3586 | gap 1, opp_overlap 55126 TGACCGATACGAAAA GGCCGCCGGGAC GACA GTCC-GGCGGCC TTTCTTATACCAAAT TERM 43 55126 - 55152 + T 100 -15.9 -4.30987 | gap 1, opp_overlap 55126 TGACCGATACGAAAA GGCCGCCGGGAC GACA GTCC-GGCGGCC TTTCTTATACCAAAT RHE_CH00053 55863 - 55180 - | hypothetical protein RHE_CH00054 56043 - 56537 + | hypothetical protein actR 57128 - 56550 - | two-component response regulator protein actS 58527 - 57199 - | two-component sensor histidine kinase protein TERM 44 57302 - 57288 - G 76 -9.2 -4.07568 | overlap 57291 CGCGGTTCTCGAAAA CCAGCG ATG CGCCGG AACGCTCCAGCAGCG TERM 45 58437 - 58474 + g 84 -16.3 -3.03771 | gap 1, opp_overlap 58426 GCCAGCGCAGCCGCA CCAGCGTCTGCAGCCGCA GTC TGCGGCTGCTGA-GCCGG TCTTCCAGCGTATGG helO 61014 - 58549 - | helicase protein TERM 46 59565 - 59583 + g 72 -11.6 -3.34715 | overlap 59563 59572 CCAGCCGCCCCGCCA GCCGCCGC GAA GCGTCGGC TCTTTCGCCGCGCTC ocdch1 61958 - 61011 - | ornithine cyclodeaminase TERM 47 62129 - 62112 - H 83 -9.8 -4.2237 | opp_overlap 62113 62121 62128 AAACGAATCCTAAAA GCCGCC CGATCC GGCGGC GGATTTCGCTTTTTT TERM 48 62128 - 62138 + H 81 -4.6 -5.03314 | opp_overlap 62112, overlap 62113 62121 62137 CCGCCCGATCCGGCG GCGG ATT TCGC TTTTTTGGAGATGGG TERM 49 63160 - 63140 - H 72 -9.7 -3.55761 | opp_overlap 63139 63136 CAGTCAGGGGTGAAA TCCCAGGGC TCA ACCCTGGAA CTGCCTTTGATACTG TERM 50 64638 - 64657 + H 77 -7.8 -4.45168 | overlap 64652 CCCCCGCGGAGCGCC TTCGGCGC GTGA GCGACGAA TTTGTCTTTTGAAGA TERM 51 65432 - 65389 - H 70 -10.5 -3.36273 | CGCCGCGAATAGGAA TAGCGAATAGCGAATAG AATTTAAAAA CTGTTCGCTACTCGCTA CCAACTATTCGCCAG TERM 52 66623 - 66607 - H 73 -8 -4.08546 | overlap 66609 66610 ATGAGTAACGATAAA GAGGGT GAGAG ACCCTC TCGCCGAAAGACCAA TERM 53 67011 - 66998 - H 74 -4.5 -4.7254 | ACTGTTTATCAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 54 68460 - 68477 + H 79 -10.5 -4.01888 | opp_overlap 68460 CAGGCCAACACAAAA GGGTCGC GACA GCGGCCC TTTCTGCTGTAAAAT TERM 55 68477 - 68460 - H 82 -8.3 -4.67608 | opp_overlap 68460 CAGGCCAACACAAAA GGGTCGC GACA GCGGCCC TTTCTGCTGTAAAAT TERM 56 68698 - 68712 + H 79 -10 -4.07568 | opp_overlap 68698 CAAAGCCCGATAAAA CAGTCC AGT GGACTG TTTTAAGACCCGAAC TERM 57 68712 - 68698 - H 84 -10 -4.41241 | opp_overlap 68698 CAAAGCCCGATAAAA CAGTCC AGT GGACTG TTTTAAGACCCGAAC TERM 58 68783 - 68755 - H 79 -12.5 -3.54146 | opp_overlap 68761, overlap 68761 GCCCGCAACCAAATA CAAAAAGCCCGCA GCT CGCGGGCTTTTTT TGATTCCTGCAAATC TERM 59 68761 - 68777 + H 100 -10.8 -5.65513 | opp_overlap 68755 68761 AACCAAATACAAAAA GCCCGC AGCTC GCGGGC TTTTTTTGATTCCTG TERM 60 68777 - 68761 - H 100 -11.5 -5.23644 | opp_overlap 68761, overlap 68755 AACCAAATACAAAAA GCCCGCA GCT CGCGGGC TTTTTTTGATTCCTG TERM 61 68975 - 68960 - H 79 -6.8 -4.68593 | gap 1, overlap 68961 68962 CCGACGATGTAAAAA CG-GCGC TTA GCGCGCG TCAGCGCCACGTTCA TERM 62 69383 - 69368 - H 100 -10.4 -5.40072 | opp_overlap 69375 CTGTCGCCAAAAAAA GGGCGA TGCG TCGCCC GCCGGTCGGCGCTCT RHE_CH00066 70995 - 71777 + | LuxR family transcriptional regulator RHE_CH00067 72307 - 71888 - | hypothetical protein RHE_CH00068 72592 - 73614 + | dTDP-glucose 4,6-dehydratase protein TERM 63 73638 - 73650 + G 74 -10.5 -3.73224 | GCTACATTCTCGTCA CCGGC GGT GCCGG TTTCATAGGCAGTCA TERM 64 74058 - 74079 + G 73 -8.8 -4.07885 | GGCGTACCAAGCTGA TCTTCGAG ATGGCG CTCGAAGA TTTTGCCGCCGCCTA TERM 65 74463 - 74483 + G 72 -4.5 -4.56597 | overlap 74466 74467 GGTACCGCTCCCGCC GTGCCGGCG ACC CGCCGATCC TTTTTGCCAACACGG galE1 73616 - 74599 + | UDP-glucose 4-epimerase protein TERM 66 76081 - 76119 + G 86 -7.3 -4.68545 | overlap 76068 GGCCTTTGCGCCGCG GCCATG-GCGCTCGCCGGC GAG GCCGCCGC-CGCTCAGGGC TTTTATCTCTTCGCT RHE_CH00070 74596 - 76464 + | cellulose synthase protein TERM 67 76659 - 76670 + G 72 -7.2 -4.20516 | overlap 76653 76662 76665 CTGGACTTGGGGCAC CGGC GGCG GCCG TTTCTTCGATGAAGG RHE_CH00071 76501 - 77019 + | hypothetical protein RHE_CH00072 77023 - 77994 + | putative cellulase H precursor protein TERM 68 78100 - 78130 + T 70 -11.1 -2.89602 | opp_overlap 78100 78104, overlap 78099 78102 78105 TCAGTCCGGAAGTCA GAGAGGCCCGC CGGGGTTTT GCGGGCCGCTC CTTTCATATCAGGCA RHE_CH00073 79437 - 78151 - | sugar ABC transporter, substrate-binding protein TERM 69 78558 - 78578 + g 80 -5.3 -4.92757 | overlap 78559 CGCCCTTCTTTTCCC GCGGCAGCA TGG TGATGCCGA TTTTGTTCTTGATGA TERM 70 79940 - 79959 + G 88 -7.8 -4.91109 | gap 1, overlap 79941 79942 GCGCGACTATATGCA GG-CCGCGG GGG CCGCGGGTC TTTTTCTCGTCGGCA TERM 71 79941 - 79957 + G 76 -9.3 -4.08042 | overlap 79940 79942 CGCGACTATATGCAG GCCGCGG GGG CCGCGGG TCTTTTTCTCGTCGG TERM 72 79942 - 79956 + G 71 -12.8 -3.04102 | overlap 79941 79940 GCGACTATATGCAGG CCGCGG GGG CCGCGG GTCTTTTTCTCGTCG RHE_CH00074 79584 - 80612 + | LacI family transcription regulator TERM 73 81620 - 81632 + G 74 -9.1 -3.87815 | CGGCTCGCCCTACTG GGCCT TGA AGGCC TTTCTGCCGCTGGCG TERM 74 81703 - 81686 - g 100 -14.1 -4.2558 | opp_overlap 81688 GACCTCCGAGGAAAA GGCGCCG GAGG CGGCGCC TGAGGTCGTTCCCCA TERM 75 82171 - 82183 + G 71 -9.1 -3.72009 | GGGCGGCCTATGCTA TCGGC GAA GCCGA TTTCAGTGGTATTCT RHE_CH00075 80622 - 82478 + | hypothetical protein RHE_CH00076 82475 - 83485 + | D-2-hydroxyacid dehydrogenase protein RHE_CH00077 84786 - 83509 - | putative oxidoreducatse protein TERM 76 84471 - 84486 + g 78 -4.6 -4.68593 | opp_overlap 84454 GGCGAATTTTCTCGA CCGAGG TAGT CATCGG TTTTTCGGTGATGAC TERM 77 84637 - 84667 + g 72 -7.5 -4.17762 | gap 1, overlap 84656 CGCATTGCTGCCGAT CATGTTGCG-GGCG CGCT CGCCGCGCAGCGGG TTCTTTTCGACGATG RHE_CH00078 85662 - 84832 - | putative endonuclease protein TERM 78 85472 - 85462 - G 71 -8.2 -3.90744 | opp_overlap 85462 85453 TGCCGCCGGAAAGAA GCCG CCG CGGC AAAGGCCGGTCAGCT TERM 79 85712 - 85699 - R 70 -9.5 -3.39895 | TGCCTGATCAATGAA CGCCG TGGA CGGCG AGCACCTGGCGCATG RHE_CH00079 86854 - 85691 - | hypothetical protein RHE_CH00080 88006 - 86858 - | putative oxidoreductase protein RHE_CH00081 88814 - 88137 - | TetR family transcriptional regulator TERM 80 90299 - 90327 + G 74 -13.1 -3.36803 | GGTCGGTTTCGGACA GCTGTCTCCCGCC GAT GGCGGCAAACAGC TTGTCACTGAAATTA RHE_CH00082 89079 - 90365 + | sugar ABC transporter, substrate-binding protein RHE_CH00083 90384 - 91331 + | sugar ABC transporter, permease protein RHE_CH00084 91324 - 92211 + | sugar ABC transporter, permease protein RHE_CH00085 92235 - 93308 + | oxidoreductase protein TERM 81 93425 - 93438 + G 71 -5.9 -4.28548 | overlap 93397 CCTCACGATCGATCC CGGCG AATT CGTCG TTTTCGTCGGTCCCT TERM 82 93676 - 93662 - g 75 -3.4 -4.82901 | GGCGGGTTACAAAAA GGCAGA TAT CCAGCC GAAGGTCAAACGCGC RHE_CH00086 93339 - 94415 + | sugar ABC transporter, ATP binding protein TERM 83 94699 - 94721 + G 74 -12.7 -3.28924 | gap 1, opp_overlap 94685 94688 ACGAGCTTGCCGCCA GCCGTGCGGC GCAC GCCGC-CGGC TTGTCGCCCGCCGTC RHE_CH00087 94515 - 95390 + | putative choline kinase protein TERM 84 96728 - 96707 - g 70 -7.9 -4.07568 | opp_overlap 96697 CTGTTTCGGCGAAAA GCTCGGCTG GGAG CGGCCGAAC TGGTTTGCCGATCTG RHE_CH00088 95391 - 97841 + | glycine cleavage system T protein uxuB 99566 - 98109 - | D-mannonate oxidoreductase protein uxaC 100978 - 99563 - | glucuronate isomerase TERM 85 100171 - 100181 + g 73 -6.8 -4.36914 | opp_overlap 100126 TCAGCGCCTTGTCGA GCAG CGC CTGC TTTTCTGCAAGCGGC RHE_CH00091 101158 - 101367 + | hypothetical protein TERM 86 101392 - 101370 - T 95 -16.3 -3.68351 | overlap 101348 GCCGCATTATTGAAA GCACGCGGC GGAAT GCCGCGTGC CCTCGCTACAGGGAC gabDch 102895 - 101411 - | succinate-semialdehyde dehydrogenase protein TERM 87 101965 - 101951 - G 71 -11.4 -3.53343 | AAGCTTCGCGGCAAA GGCGTC ATA GACGCC GGACTGGATATAGAG TERM 88 102095 - 102080 - G 81 -7.5 -4.46675 | ATCGAAGACAATAAA CGGCG CGTTGC CGCCG AGCTCCAGGCTCACC TERM 89 102870 - 102860 - G 73 -6.8 -4.2558 | CAGCGGCGAGGAAAA GGCA ACG TGCC TGGTCAGTGCGGTGG gabT 104238 - 102958 - | 4-aminobutyrate aminotransferase TERM 90 104187 - 104206 + g 75 -12.1 -3.65522 | GGGTGGTCATGCCGA CGCCGCG TGAAAT CGCGGCG TTCTTCCGGTCGGTA RHE_CH00094 104403 - 105212 + | MerR family transcriptional regulator rnd1 105297 - 105923 + | RNAse D protein TERM 91 107314 - 107298 - g 76 -6.5 -4.45117 | GACAGCCGAAAGAAA TTGCCGC ACA GCCGCAA CCGGTGCCGCTTCCC TERM 92 107459 - 107438 - g 75 -3.6 -4.8622 | overlap 107421 CCGTCGAATGAAAAA GCCGGCGA AACGAG CCACCAGC ATCACCATCACCAGG RHE_CH00096 106148 - 107665 + | hypothetical protein TERM 93 107721 - 107686 - T 100 -22.8 -4.15565 | opp_overlap 107690 107693, overlap 107690 TTCATTACCTGAAAA TAAAGAACCCGCCGGA TCGC TCCGGCGGGTTCTTCA GTTCAAAGAGGGAGC TERM 94 107717 - 107690 - T 100 -21.4 -4.67048 | opp_overlap 107690 107693, overlap 107686 TTACCTGAAAATAAA GAACCCGCCGGA TCGC TCCGGCGGGTTC TTCAGTTCAAAGAGG TERM 95 107690 - 107717 + T 100 -21.4 -3.17075 | opp_overlap 107686 107690, overlap 107693 TTACCTGAAAATAAA GAACCCGCCGGA TCGC TCCGGCGGGTTC TTCAGTTCAAAGAGG TERM 96 107693 - 107714 + T 100 -17.3 -3.73068 | opp_overlap 107690 107686, overlap 107690 CCTGAAAATAAAGAA CCCGCCGGA TCGC TCCGGCGGG TTCTTCAGTTCAAAG rpsA 109445 - 107742 - | 30S ribosomal protein S1 cmk 110395 - 109619 - | cytidylate kinase TERM 97 110610 - 110632 + H 70 -10.6 -3.29461 | GGCTTGCACGGCATT TTGCCGAATC GCG GATTCGGCCA TTCTCACGAGGCTTA RHE_CH00099 110650 - 111033 + | hypothetical protein TERM 98 111078 - 111066 - T 95 -3.3 -5.67063 | opp_overlap 111045 111067, overlap 111067 CGGATTACAAAAAAA TTCCG GGT CGGAT TTTTTAGGCTTGCTA TERM 99 111067 - 111077 + T 86 -6.8 -5.10029 | opp_overlap 111067 111066, overlap 111045 GGATTACAAAAAAAT TCCG GGT CGGA TTTTTTAGGCTTGCT TERM 100 111771 - 111744 - T 77 -13.4 -3.02511 | GCCATCCCCTCAACA CCGGTAGGCCGC CCCC ACAGCCCACCGG CGCCTCGCTTAACTC RHE_CH00101 112016 - 111780 - | hypothetical protein TERM 101 112410 - 112438 + G 72 -2.2 -4.72272 | opp_overlap 112403, overlap 112417 112418 CGGCAACACGACGCG GGCGGCCCTCGC CGTCA GTGACGGCAACC TTTTTCATGCGGCGG RHE_CH00102 112252 - 112974 + | hypothetical protein RHE_CH00103 113042 - 113830 + | hypothetical protein RHE_CH00104 114306 - 113833 - | hypothetical protein TERM 102 114203 - 114231 + g 76 -13.9 -3.14132 | TGAAAATGCTTCTTC TCGTAGATCTCCG GGT CGGAGATCAGCGA TTGCTGGCCAAGGGC TERM 103 114947 - 114967 + G 100 -18.3 -3.66178 | overlap 114963 114965 CTTTATCTCGCCTCC GGCTGCGGC GTC GCCGCAGCC TTTGCCGTTCGCGGC RHE_CH00105 114422 - 115057 + | hypothetical protein TERM 104 115170 - 115121 - T 100 -27.7 -3.6682 | opp_overlap 115099 115127, overlap 115104 115101 115122 CTCTAGCTATCTAAA CTAGAACAGGATGATTTTAGGTC GACC GACCTAAAATCATCCTGTTCTAA GGCGCCGTCAGCCCT TERM 105 115169 - 115122 - T 100 -29 -2.79878 | opp_overlap 115099 115127, overlap 115104 115101 115121 TCTAGCTATCTAAAC TAGAACAGGATGATTTTAGGTC GACC GACCTAAAATCATCCTGTTCTA AGGCGCCGTCAGCCC TERM 106 115127 - 115164 + T 100 -23.1 -3.28924 | opp_overlap 115104 115101 115122 115121, overlap 115099 CTATCTAAACTAGAA CAGGATGATTTTAGGTC GACC GACCTAAAATCATCCTG TTCTAAGGCGCCGTC irr 115597 - 115178 - | iron transcriptional regulator protein fabA 115899 - 116414 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase fabB 116460 - 117692 + | 3-oxoacyl-(acyl carrier protein) synthase I fabI1 117697 - 118503 + | enoyl-(acyl carrier protein) reductase TERM 107 118553 - 118527 - T 100 -19.5 -3.85165 | opp_overlap 118527 GATTGGAAATTCAAA GGCCGTGCGCA TCCTC TGCGCACGGCC TTTTGTTTGGCGGAT TERM 108 118527 - 118553 + T 100 -19.5 -4.87133 | opp_overlap 118527 GATTGGAAATTCAAA GGCCGTGCGCA TCCTC TGCGCACGGCC TTTTGTTTGGCGGAT RHE_CH00110 119616 - 118600 - | rRNA (guanine-N2-)-methyltransferase, small subunit protein TERM 109 118716 - 118749 + g 83 -17.4 -2.52834 | gap 1, overlap 118719 TGGCGACGAGCATCA GCCGGCCGCCGCCGC GAAGG GCGGAGGCGG-CGGC CTTGATCATCGCCTG TERM 110 118719 - 118750 + g 83 -15.8 -3.21747 | overlap 118716 CGACGAGCATCAGCC GGCCGCCGCCGC GAAGGGCG GAGGCGGCGGCC TTGATCATCGCCTGG TERM 111 118912 - 118930 + g 72 -13.8 -2.74012 | CGCCAGGTTGTCCCG CGCGGCCT CCA GGGCCGCG TGATTGGCCTCATAG TERM 112 119667 - 119645 - R 100 -17 -5.1523 | opp_overlap 119662, overlap 119657 TTTAGAATAGAAAAA GGGCGCGGAA GAT TCCCGCGCCC GGAATTGAAGCTGGC pnp 121830 - 119692 - | polynucleotide phosphorylase/polyadenylase TERM 113 121742 - 121716 - G 71 -9.5 -3.78934 | gap 1, opp_overlap 121730 121731 121740, overlap 121740 121741 CGGTGGCGAGAACAA CGG-TCTCACCA TAAG TGGCGAGAACCG CGCCGTCGGCCTGAC TERM 114 122177 - 122141 - R 81 -13 -3.54307 | gap 1, opp_overlap 122142, overlap 122143 122145 AACATCGTCCCGAAA CAGATCCGGCGGACGCT TAAA AGCGCCCGCCGGA-CAA TCTTAGCGGCGGATA TERM 115 122175 - 122143 - R 91 -17.8 -3.34715 | gap 1, opp_overlap 122142, overlap 122141 122145 CATCGTCCCGAAACA GATCCGGCGGACGCT TAAA AGCGCCCGCCGGA-C AATCTTAGCGGCGGA TERM 116 122174 - 122145 - R 100 -21.5 -3.24232 | opp_overlap 122142, overlap 122143 122141 TCGTCCCGAAACAGA TCCGGCGGACGCT TAAA AGCGCCCGCCGGA CAATCTTAGCGGCGG rpsO 122449 - 122180 - | 30S ribosomal protein S15 RHE_CH00113 123451 - 122600 - | putative hydrolase protein truB 124462 - 123530 - | tRNA pseudouridine synthase B rbfA 124885 - 124475 - | ribosome-binding factor A TERM 117 124984 - 125007 + r 75 -9.5 -3.73953 | opp_overlap 124962 124963 124984, overlap 125006 CCGGCAGGTGGAAAA GCCACCCGC CGGAGA GCGGATGGC TTTCGTCAAGCTGCT TERM 118 125007 - 124984 - R 87 -12.4 -4.11216 | opp_overlap 124984 125006, overlap 124962 124963 CCGGCAGGTGGAAAA GCCACCCGCC GGAG AGCGGATGGC TTTCGTCAAGCTGCT infB 127786 - 125036 - | translation initiation factor IF-2 TERM 119 126073 - 126092 + g 73 -3.6 -4.80396 | gap 1, opp_overlap 126070, overlap 126055 CTTGCAGCAGAACGG CTTCGAGCA GCT TG-TCGAGG TTTTTGCCTGTTTTG TERM 120 127214 - 127250 + g 71 -13 -3.02829 | GACAGCCGGTTCAGC GGCAGCAGCGGC-GGCCG CTT CGGCCTGCC-TGGCTGCC TCTTCGACGGCTCTG TERM 121 127853 - 127894 + r 75 -5.7 -4.56597 | opp_overlap 127856 127862 127867 TCAAATACTGTCGAT CAATGAGAATGAGACCGGC CGAT GCCGGTGACCGCCTCATTG TTTTTGCCGGCCAGC RHE_CH00117 128578 - 127889 - | hypothetical protein TERM 122 128102 - 128127 + g 72 -3.9 -4.60041 | gap 1, overlap 128103 128105 GGTCTCCATTCCGAG GTG-CCAGGCCT TGC GGGCCTGGTCGA TTTTTCGCACTCCGT nusA 130179 - 128578 - | transcription elongation factor NusA RHE_CH00119 130836 - 130240 - | hypothetical protein TERM 123 130919 - 130897 - H 93 -7.7 -5.4833 | gap 1, opp_overlap 130897 130918 CGAGCTAATAAAAAA GAGCGGGTCC TTGC GG-CCCACTC TTCATCAAGCGATCA TERM 124 131588 - 131613 + G 89 -12.5 -4.13767 | ATCGGCGGCGTCATC GTGGCGGCAGC GGGT GCTGCCGCGGC TTTTGCGGTGAACAC TERM 125 132614 - 132568 - g 77 -14.5 -2.95766 | overlap 132562 132558 132565 TATAAGACACAACCA GCG-GCGCACGCAGGCCGATGCC GAA AACATCGACCGGC-TGCGCGCGC TCCATCGCGGCGAAG RHE_CH00120 131018 - 132721 + | putative ABC transporter, permease protein TERM 126 132888 - 132942 + G 72 -7.3 -4.1552 | gap 3, overlap 132902 GGATGCCAACCAGCT GCT-GGCTG-TCGCAACCGACG-CCT CCGACC AGGTCGTCGGTTGCCTTCAGCTGAGC TTTCTTCCCGGCCTC RHE_CH00121 132730 - 133185 + | acetyltransferase protein RHE_CH00122 134430 - 133192 - | transglycosylase protein TERM 127 133326 - 133339 + g 79 -9.5 -4.18018 | CGACGTCATAGCCCT GGCGC TCCA GCGCC TTTTGCATGGCGGCG recR 135047 - 134442 - | recombination protein RecR RHE_CH00124 135066 - 135722 + | hypothetical protein RHE_CH00125 136316 - 135993 - | hypothetical protein dnaX 138213 - 136339 - | DNA polymerase III subunits gamma and tau RHE_CH00127 138445 - 138855 + | hypothetical protein RHE_CH00128 138852 - 139811 + | MutT/NUDIX family NTP pyrophosphohydrolase RHE_CH00129 139816 - 140511 + | transcriptional regulator protein TERM 128 140951 - 140970 + F 100 -11.4 -4.95484 | opp_overlap 140950 140949 CGCTTAACGAGAACG GGCGTTGC TTTC GCAGCGCC TTTTGTTTCCTGCTG TERM 129 141299 - 141264 - g 73 -6.7 -4.36914 | overlap 141265 GCTGGCGGGAGAAAA TGCCGTCGCCAGGCA ATATGA TGACTGGCGTCAGCG CGGTCTGCCGATTGC RHE_CH00130 141037 - 141405 + | putative glyoxalase protein pheA 142279 - 141425 - | prephenate dehydratase kdsB1 143045 - 142290 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 130 142860 - 142910 + g 86 -11.9 -4.17316 | opp_overlap 142868, overlap 142869 GGCGGCCGCCACCGT GTCGAACACCTGC-GGGTCGTCGAC GGC GACGACGACCCGGCCGAT-TTCGGC TTCTTTTGCGCGCAT TERM 131 142869 - 142902 + g 70 -13.1 -2.84422 | gap 1, opp_overlap 142868, overlap 142860 CACCGTGTCGAACAC CTGC-GGGTCGTCGAC GGC GACGACGACCCGGCCG ATTTCGGCTTCTTTT RHE_CH00134 145084 - 143699 - | sugar ABC transporter, permease protein cycM 143199 - 143762 + | cytochrome-c protein TERM 132 143808 - 143789 - Gf 75 -12.8 -3.07935 | opp_overlap 143789 ATCGCATTCATGGAA GCCCGGCC CGCA AGCCGGGC TTTTCTTATCATGCC TERM 133 143789 - 143808 + gF 100 -12.1 -4.81212 | opp_overlap 143789 ATCGCATTCATGGAA GCCCGGC CCGCAA GCCGGGC TTTTCTTATCATGCC TERM 134 144534 - 144522 - Gf 81 -10.5 -4.07568 | CGTCGCGGCCGAAAA GCCGC GTG GCGGC GATATGCCCGGCCGT TERM 135 145019 - 144994 - Gf 100 -5.9 -5.7946 | opp_overlap 144994 TCCGCAAGAAAAAAA GCGGGCACAGC CAGG GCACAGCCCGC TTTTCCGCTCCGGCC TERM 136 145432 - 145408 - g 82 -14.3 -3.26433 | opp_overlap 145424 CAACCAGATCACGAA GGCGGCGATGA ACC TCATCGACGCC GAACGCGCCGAACTC TERM 137 145524 - 145542 + G 70 -10.2 -3.56643 | overlap 145526 CGGGCGTTGCTAATC TCGGCGGC AAG GCCGCCTA TTTCGGCAATGTCGC TERM 138 145526 - 145540 + G 74 -12.8 -3.36073 | overlap 145524 GGCGTTGCTAATCTC GGCGGC AAG GCCGCC TATTTCGGCAATGTC RHE_CH00135 145313 - 146305 + | sugar kinase protein RHE_CH00136 146837 - 146298 - | hypothetical protein RHE_CH00137 146917 - 146819 - | hypothetical protein TERM 139 146970 - 146956 - H 70 -5.6 -4.36914 | opp_overlap 146955, overlap 146958 GGGTCTGGTAGAAAA TGCCCG GAA CGGGAA AATTATCACCCCTCT TERM 140 147510 - 147543 + G 81 -7.9 -4.50358 | overlap 147512 147537 TCGTCGGCATGGGGC GAATCGGCACGGCGG TGGC CCGCCGCGCCAAGGC TTTTGGTCTTTCGAT RHE_CH00138 147023 - 148024 + | D-2-hydroxyacid dehydrogenase protein RHE_CH00139 148529 - 148056 - | acetyltransferase protein moeB 149293 - 148526 - | molybdopterin biosynthesis protein MoeB recF 150465 - 149341 - | recombination protein F TERM 141 150308 - 150250 - G 89 -11 -4.28254 | gap 3, opp_overlap 150262 CGCGAAGATCGAAAA GCCGCCGGCC-GCGCCGACACGGGTAATG TCGC CAT-AGGCGGCTCGGCGCAGGCCG-CGGC CGGGCGAAAGCAGCG RHE_CH00142 150848 - 151213 + | Cro/CI family transcriptional regulator RHE_CH00143 151709 - 151335 - | hypothetical protein TERM 142 151824 - 151847 + r 84 -13.8 -3.61268 | opp_overlap 151824 TGCGCGAGCAAAAAA GCCGGAGACG TTTC CGTCCCCGGC TTTCGCGATTGCCTA TERM 143 151847 - 151824 - R 100 -16 -5.14563 | opp_overlap 151824 TGCGCGAGCAAAAAA GCCGGAGACG TTTC CGTCCCCGGC TTTCGCGATTGCCTA dnaJ1 153002 - 151875 - | DnaJ family molecular chaperone TERM 144 152083 - 152120 + g 81 -7.5 -4.4009 | overlap 152085 TTAAGACGGAACTGT TTGCCGGCCTGCGTGCC CTCA GGCACGCTCACCCGCGA TTTTGTGCCGTCGAG TERM 145 152682 - 152641 - G 78 -14.4 -3.09505 | gap 2 ATATTGTAGCGAAGA TCGGCGCC-GCGCTC-GCGG CCTC CCGCAGAGCGCTGGCGCCCC CGTCCGCCGCCCATC dnaK 155004 - 153088 - | molecular chaperone DnaK RHE_CH00146 157612 - 155282 - | penicillin binding protein TERM 146 156173 - 156216 + g 76 -15.4 -2.5409 | opp_overlap 156163, overlap 156201 ATACATGACCAGCTG CGC-GGCCACCGTGTTCAGC GACTTG GC-GAGCGCGGTGGCCAGCG TCACTTCGCCATTGT TERM 147 156741 - 156708 - G 71 -9.5 -3.737 | gap 1, overlap 156709 GAATCGGTGATGAAA CCTTGCTCGCGCATCG CCG CGA-GCACGAGCTGGG CGCGCGCATTCGCCG TERM 148 157157 - 157140 - G 86 -6.3 -5.08088 | gap 1, overlap 157141 AAGTGTGAATAAAAA CGCCGATC CTC GAT-GGCG ATGACGGCTTCGGGA TERM 149 158078 - 158046 - R 70 -12 -2.64616 | gap 1, opp_overlap 158047 GGCCGATCGACATCA GGCCCGGTGCATCCC CCCA AGGA-GCACCGGGCT TTTTCGTGGCTCCGC TERM 150 158047 - 158077 + r 100 -14.8 -4.7497 | gap 1, opp_overlap 158046 GCCGATCGACATCAG GCCCGGTGCATCC CCCCAA GGA-GCACCGGGC TTTTTCGTGGCTCCG TERM 151 158136 - 158117 - R 95 -15 -3.86015 | opp_overlap 158114 GATTCTGTGCAGAAA GGGCGGCA TTGC TGCCGCCC ACGATATTTCAGTCG RHE_CH00147 159038 - 158145 - | hypothetical protein TERM 152 159163 - 159188 + r 100 -15.5 -5.0925 | opp_overlap 159168, overlap 159168 GAGCCGAGCGGATGA CGAAAGGCCGG GCGA CCGGCCTTTTG TTTTTGATTTTGACG TERM 153 159168 - 159183 + r 100 -11.8 -5.36689 | opp_overlap 159168, overlap 159163 GAGCGGATGACGAAA GGCCGG GCGA CCGGCC TTTTGTTTTTGATTT TERM 154 159183 - 159168 - R 83 -11.8 -3.79251 | opp_overlap 159168 159163 GAGCGGATGACGAAA GGCCGG GCGA CCGGCC TTTTGTTTTTGATTT dapE1 160621 - 159233 - | hypothetical protein TERM 155 160885 - 160899 + G 76 -9.2 -4.08706 | overlap 160886 ATTGGCGGCTGGTGC TCGCGG CCG CCGCGG TTTGTCTGGTCGGCG TERM 156 163074 - 163088 + G 81 -7 -4.72272 | GTCGAAGAAGGCTGC GCCCAG GTA CAGGGC TTTTTGCTCGGCAAG RHE_CH00149 160833 - 163220 + | putative sensory box/GGDEF family protein RHE_CH00150 163643 - 163227 - | MarR family transcriptional regulator TERM 157 163798 - 163767 - H 100 -13.8 -5.08255 | opp_overlap 163767 ACCTGGAAAACAAAA GTCGCCATGACC TGGAGGTT GGCCATGGCGAC TTTAAAATGGGGACA TERM 158 163767 - 163798 + H 77 -11.6 -3.59979 | opp_overlap 163767 ACCTGGAAAACAAAA GTCGCCATGACC TGGAGGTT GGCCATGGCGAC TTTAAAATGGGGACA TERM 159 165102 - 165114 + G 78 -6.9 -4.56597 | opp_overlap 165091 CAAAGGCGAAGCCCG GCGTC GAA GGCGC TTTTTCGCCCGCCGA polA 164051 - 167050 + | DNA polymerase I ftsK1 167219 - 169546 + | cell division protein RHE_CH00153 170086 - 169580 - | hypothetical protein gmk1 170653 - 170096 - | guanylate kinase (GMP kinase) protein TERM 160 170600 - 170589 - G 75 -3.6 -4.82901 | opp_overlap 170591, overlap 170569 170591 TCGCGGCCAGAAAAA CGCC GCGC AGCG AGGTTCATCAGCGTG phnM1 171837 - 170698 - | phosphonate metabolism protein TERM 161 170954 - 170996 + g 72 -13.5 -2.71712 | opp_overlap 170940, overlap 170953 170969 AGCACGTCGAGCACG CCCATTTCGGCGAGATCGC GGGCG GCGATATTACCGGAATGGG ATTTGCCGCGCACGA RHE_CH00156 172611 - 171850 - | hypothetical protein RHE_CH00157 174029 - 172686 - | phosphonate ABC transporter permease RHE_CH00158 174996 - 174037 - | phosphonate ABC transporter permease TERM 162 174646 - 174599 - G 76 -9.2 -4.00934 | gap 1, overlap 174600 ACCGCAAAGATGAAA GC-GACAATCGTCGAGATCAGCG CCA CGTTGATCGTGACGATCATCAGC TCGAAATATTCCGGA TERM 163 175054 - 175019 - R 93 -16.4 -3.48276 | opp_overlap 175019 CCGCCTGCTACATAA TTCCATCCTTAAATCG AGTT CGATTTGAGGATGGAA TTATGTAGCAATTCA TERM 164 175019 - 175054 + r 100 -18.6 -3.50447 | opp_overlap 175019 CCGCCTGCTACATAA TTCCATCCTTAAATCG AGTT CGATTTGAGGATGGAA TTATGTAGCAATTCA TERM 165 175155 - 175127 - R 95 -13.8 -4.42386 | gap 1, opp_overlap 175133, overlap 175130 GCTGTAGTCACAAAA GAAGGGGCGGCCG TCGC CGGCCGCCCCG-C ATTGAAAAGGCGATC TERM 166 175153 - 175130 - R 100 -21 -4.33182 | opp_overlap 175133, overlap 175127 GTAGTCACAAAAGAA GGGGCGGCCG TCGC CGGCCGCCCC GCATTGAAAAGGCGA TERM 167 175133 - 175186 + r 84 -13.7 -3.57561 | gap 1, opp_overlap 175130 175127 175164 GTCACAAAAGAAGGG GCGGCCGTCGCCGGCCGCCCCGCATT GAA AAGGCGAT-CAGCCGCCGATGGCCGC TTTACGAACTTCGAC TERM 168 175184 - 175164 - R 71 -7.5 -4.18018 | opp_overlap 175133 GCCCCGCATTGAAAA GGCGATCAG CCG CCGATGGCC GCTTTACGAACTTCG RHE_CH00159 176074 - 175169 - | phosphonate ABC transporter substrate-binding protein RHE_CH00160 177007 - 176162 - | phosphonate ABC transporter ATP-binding TERM 169 176551 - 176598 + g 75 -14.8 -2.80816 | gap 1 CGCGGGCGATCGCCA CG-CGCTGCTGCTGGCCGCCG GAAAGGG TGCCGGCCGGCTGCAGCGCCG TCTGCTCGATGCCGA RHE_CH00161 177742 - 177125 - | acetyltransferase protein TERM 170 177373 - 177325 - G 71 -13.8 -2.62184 | gap 1, opp_overlap 177325 CGTCCTTCGATACCA CCGCGCCGGCGCCGATGACGGCA CCGT TGCCGACATTGACGCCCG-GCAG GATGGTTGCGCCATG RHE_CH00162 178446 - 177739 - | phosphonate ABC transporter ATP-binding TERM 171 177835 - 177847 + g 87 -6.2 -5.18726 | opp_overlap 177834 177835, overlap 177829 GAAGATGCCGAGAAG GGCG ACGCC CGCC TTTTTCTTCTCCGCG phnK 179250 - 178474 - | phosphonates transport ATP-binding protein phnJ 180122 - 179247 - | C-P (carbon-phosphorus) lyase component protein TERM 172 179908 - 179872 - G 78 -3.6 -5.00884 | gap 1, opp_overlap 179885 ACCTTCTGGAAAAAA GCGCGGATCGAGACGGC GTTG GTCGTATCG-TCGGCAC CCTGGTCGATGACCT TERM 173 179970 - 179997 + g 72 -13.4 -2.71712 | overlap 179969 CGTCACCTGCACGCC GCCGGTGCCCCA GCCG TAGGGCATCGGC ATTTCGCGCGAGGCG phnI 181225 - 180119 - | C-P (carbon-phosphorus) lyase component protein phnH 181838 - 181230 - | carbon-phosphorus lyase complex subunit phnG 182314 - 181838 - | C-P (carbon-phosphorus) lyase component protein TERM 174 182726 - 182745 + G 89 -11.4 -4.2828 | gap 1, overlap 182726 CGGCATCGGCGATCA G-GCGCGCG AGA CGCGCGCAC TTTTGCTCGATGAGG TERM 175 182726 - 182744 + G 70 -11.6 -3.16647 | overlap 182726 CGGCATCGGCGATCA GGCGCGCG AGA CGCGCGCA CTTTTGCTCGATGAG RHE_CH00168 182424 - 183161 + | GntR family transcriptional regulator gpmA 183841 - 183206 - | phosphoglyceromutase TERM 176 183302 - 183319 + g 71 -9.1 -3.77206 | overlap 183294 183305 CCCGGTCGCGAGATT GAGGGCG AGCA CGCCTTC TTTGGTCAGCTTGTC TERM 177 183305 - 183316 + g 70 -7.2 -4.01158 | overlap 183294 183302 GGTCGCGAGATTGAG GGCG AGCA CGCC TTCTTTGGTCAGCTT dapB1 184686 - 183862 - | dihydrodipicolinate reductase RHE_CH00171 186489 - 184702 - | multidrug ABC transporter ATP-binding protein TERM 178 186586 - 186608 + r 75 -12.6 -3.05384 | GTTTGGCTAGACCGC GGCGCGTCCC GGA GGGGCGCGCG TTGGCTCAGCGCCGC glk 187639 - 186614 - | glucokinase mgsA 188037 - 187657 - | methylglyoxal synthase TERM 179 187835 - 187797 - G 78 -5.2 -4.71426 | opp_overlap 187827, overlap 187827 GGTCGACGAAGAAAA TCAGGGCGTCGACCTC TCCGGTC GAGATCAGCGCGCCGA TCTGCTGGTCGCCGC TERM 180 187827 - 187862 + g 84 -11 -4.12188 | gap 1, opp_overlap 187797 187827 CTCCGGTCGAGATCA GCGCGCCGATCTGCTGG TCG CC-GCCGAGCGGCCCGC TTTTCAGCCTGGTGA mepA 189197 - 188124 - | penicillin-insensitive murein endopeptidase TERM 181 188937 - 188900 - G 84 -15.5 -3.30903 | overlap 188890 AAAACCGCTCCAGAA GCGCAATCATCGCCGGG TTGC CCCAGCGGCGGTTGCGC GAAAGCCGCATCGCC TERM 182 189508 - 189524 + G 70 -10.1 -3.66178 | overlap 189509 CGCCCCTGATGGCAG TGGCTGG GGA CCAGCCG TTTCAAATTGGAAGC TERM 183 189746 - 189771 + G 78 -10.4 -4.05788 | TGACGAACTGCTTGT GTCCTACGGC CTGCTT GCCGAAGGAC TTTCCTTTCCCGCGG RHE_CH00175 189438 - 191270 + | peptide ABC transporter, substrate-binding protein TERM 184 191341 - 191327 - f 79 -12.8 -3.47494 | AGCGAATCACGACAA GCCGGC AGG GCCGGC AAGGGAAGGCTGGCG RHE_CH00176 191421 - 192509 + | peptide ABC transporter, permease protein TERM 185 192615 - 192638 + G 73 -6.6 -4.32436 | ATTTCCGGGCGAACG GCCGCGGCTA CTGG TCGCTGTGGC TTTTCCTGCTGCTGT TERM 186 192781 - 192761 - g 73 -8.3 -3.96624 | TATCCCGAGGAGAAA TTCGGCG GCTTTCT CGCCGAA ACCGACTACCGCTCC RHE_CH00177 192509 - 193657 + | peptide ABC transporter, permease protein RHE_CH00178 193663 - 195291 + | peptide ABC transporter, ATP binding protein RHE_CH00179 195300 - 196259 + | hydroxyacid dehydrogenase protein RHE_CH00180 196401 - 196763 + | hypothetical protein TERM 187 196780 - 196819 + F 86 -5.5 -5.28826 | overlap 196786 CCTTTGGCAGACGAT CTCCCGCATCCCGCCGC CACGCT GCGGCGGGATGTTTATG TTTTTTCTGGACTTT TERM 188 196786 - 196813 + F 100 -18.5 -4.68607 | overlap 196780 GCAGACGATCTCCCG CATCCCGCCGC CACGCT GCGGCGGGATG TTTATGTTTTTTCTG TERM 189 196882 - 196858 - f 85 -12.9 -3.79113 | ATTTTTCGATAAGAA GGCGCACGA GCCGGTT TCGTGCGCC GGCCCGGAACTTGGC pncB 196933 - 198237 + | nicotinate phosphoribosyltransferase TERM 190 198519 - 198537 + G 74 -5.3 -4.58283 | gap 1 GAAGCATTGTCGAGT CCGG-ATG TGAG CATTCCGG TTTTTCACAGGATTA TERM 191 198690 - 198710 + G 82 -11.2 -3.96624 | opp_overlap 198688 GAATCTCTGAAAGCG GCAGCACT GATAG AGTGCTGC TTTCTGCTCGACCTG RHE_CH00182 198261 - 198737 + | hypothetical protein RHE_CH00183 199152 - 199436 + | hypothetical protein RHE_CH00184 199756 - 199409 - | hypothetical protein TERM 192 199529 - 199510 - G 80 -5.6 -4.77567 | overlap 199511 ACCGCCACAAGAAAA GCGCCTGC AACG GCAAGCGA TGAAATCTGTTGCCA TERM 193 199920 - 199901 - H 75 -13.6 -2.50816 | overlap 199884 199900 GCCGGACGCACTAAT CGCTTCGC CACG GCGAAGCG GTGCGGCCGTGGGCC TERM 194 200004 - 199958 - H 88 -18.1 -2.82516 | gap 1, opp_overlap 199958 TCCGCCAGGATCAGA GGCGATCGGC-TCGGACGTACC GAGG GGTATGTCCGTCGCCAATCGCC TTTGCCCTGACGAAA TERM 195 199958 - 200004 + H 100 -18.1 -3.59979 | gap 1, opp_overlap 199958 TCCGCCAGGATCAGA GGCGATCGGC-TCGGACGTACC GAGG GGTATGTCCGTCGCCAATCGCC TTTGCCCTGACGAAA RHE_CH00186 200451 - 200768 + | hypothetical protein RHE_CH00187 201095 - 202087 + | outer membrane lipoprotein TERM 196 202120 - 202154 + F 100 -19.4 -5.00196 | TCGACGATTGAGATC GGGCGTATGGCGGAGG GGA TTTTCGCCATACGCCC TTTTCTTATTTGGAG RHE_CH00188 202176 - 203687 + | sugar ABC transporter, ATP-binding protein TERM 197 204041 - 204067 + G 70 -8 -4.07687 | gap 1 CCTGGTACGTGACGA TGCCGGTTGCC ATCGTC GGCG-CCGGCA TTTTCGGCGCAGCCT RHE_CH00189 203695 - 204798 + | sugar ABC transporter, permease protein RHE_CH00190 204809 - 205780 + | sugar ABC transporter, permease protein cdd 205783 - 206172 + | cytidine deaminase TERM 198 206429 - 206415 - g 80 -5.6 -4.72986 | CATTTTTATGAAAAA GGCGAT GCC AACGCC ATGCGCCTGCCGATC deoD 206169 - 206975 + | purine nucleoside phosphorylase TERM 199 206991 - 207017 + G 74 -13 -3.31144 | opp_overlap 206979 206997 206998, overlap 206997 ATAGCCATTCCATCC GGGAAACGGCGG CAG TCGCCCTTTCCC TTCTCGACCTCACCA deoC 206972 - 207748 + | 2-deoxyribose-5-phosphate aldolase protein TERM 200 208223 - 208239 + G 74 -9.3 -3.89346 | opp_overlap 208218, overlap 208210 GACCGGAACATTGGC GCCCGCC GAT GGCCGGC TTTATGCCGTGCGCG TERM 201 208987 - 208962 - g 73 -13.2 -3.14344 | opp_overlap 208952 208984, overlap 208977 208980 208981 CACGCTGCCGACGAA GCCGCGGCGG AAAAAG CAGCCGCGGC CCTTGCCGTGCATTA deoA 207750 - 209057 + | thymidine phosphorylase RHE_CH00195 209633 - 209064 - | hypothetical protein TERM 202 209725 - 209702 - R 100 -14.6 -5.20333 | gap 1 TATCGATAACAAAAA GGCCCGGAGCG CAC CG-TCCGGGCC AGAAAGTCTTGCGAT upp 210405 - 209761 - | uracil phosphoribosyltransferase add 211483 - 210515 - | adenosine deaminase TERM 203 211013 - 211036 + g 84 -11 -4.11371 | overlap 211030 ACCGGCCAGGTTGAA GCCGGTGATC AAGG GATTGCCGGC TTTTGCCGCATATTC deoB 212760 - 211480 - | phosphopentomutase RHE_CH00199 213385 - 212804 - | hypothetical protein RHE_CH00200 214020 - 213385 - | hypothetical protein TERM 204 214251 - 214232 - R 73 -12.8 -2.60496 | opp_overlap 214247, overlap 214231 214229 TCCTGGCGGAAAGAT GCGCGGCC CACC GGCCGCAC CGCTTCGAAATGGCG TERM 205 214278 - 214288 + r 81 -4.6 -5.03314 | GGCGAAGCGATCAGT GCGT TCG GCGC TTTTTTAGAGCTGGG RHE_CH00201 214717 - 214409 - | hypothetical protein pilA 215130 - 215405 + | component of type IV pilus, pilin subunit protein TERM 206 215471 - 215497 + F 86 -10.9 -4.2361 | gap 1 CCGAATTATCGAGCG GGCTCACGCGCT GAAC GGC-CGTGAGCC TTTTCGCATTCTGTT cpaA 215529 - 216041 + | prepilin peptidase protein cpaB 216152 - 216967 + | pilus assembly protein cpaC 216980 - 218476 + | pilus assembly secretion protein cpaD 218530 - 219231 + | pilus assembly protein cpaE 219246 - 220523 + | pilus assembly protein, response regulator protein TERM 207 220630 - 220591 - g 86 -15.7 -3.54459 | gap 1, opp_overlap 220627 CGAAGGTTTCGGAAA GGCCGGAGGC-GCGATTG CTCCT CCACCGCCGCCCCCGGCC GCCGCCCCCGTGGCC cpaF 220556 - 222031 + | pilus assembly secretion ATP-binding protein RHE_CH00209 222036 - 223043 + | pilus assembly protein TERM 208 223116 - 223138 + G 78 -6.3 -4.58395 | overlap 223115 CTGATCGCTGTTTTC GTCGCGA TCGCCGTCT TCGCGAC TTTTTACACGATCGC TERM 209 223518 - 223544 + G 73 -6.4 -4.37092 | overlap 223482 CCCATGCGTATGCTC GCCGTCATCGGC ATC GCCTATCTCGGC TTTTATGCGCCGAAT TERM 210 223951 - 223934 - g 81 -9.8 -4.21933 | CGAAGCGGAAAAGAA GGCGGC CGCCCT GCCGCC GAAACTGACGGTGCC RHE_CH00210 223059 - 224045 + | pilus assembly protein TERM 211 224124 - 224134 + F 71 -4.6 -4.56775 | opp_overlap 224124, overlap 224110 TCGGGGAGCACGGAA GTGG CCG CCGC TTTTTCCAGCGCAAT RHE_CH00211 224173 - 224805 + | amino acid efflux LysE family protein RHE_CH00212 225686 - 224847 - | TPR repeat-containing pilus assembly protein TERM 212 226218 - 226206 - g 80 -5.5 -4.72486 | overlap 226208 TACAAATCGGAAAAA TCGCC GGC AGCGA CCTTGATGATCCCCC TERM 213 226258 - 226277 + G 72 -7.8 -4.15044 | opp_overlap 226260, overlap 226260 ACGGCGCCGACATCA AACGCCAG CTCG CTGGCGTC TTTCTTGCCCGCGAC TERM 214 226275 - 226260 - g 76 -10.4 -3.83026 | opp_overlap 226258 226260 GGCGCCGACATCAAA CGCCAG CTCG CTGGCG TCTTTCTTGCCCGCG TERM 215 226260 - 226275 + G 70 -10.4 -3.6761 | opp_overlap 226260, overlap 226258 GGCGCCGACATCAAA CGCCAG CTCG CTGGCG TCTTTCTTGCCCGCG RHE_CH00213 225828 - 227219 + | leucine aminopeptidase protein TERM 216 227267 - 227233 - f 72 -10 -3.6993 | gap 2, opp_overlap 227231, overlap 227231 GACGGATGCAAAAGA GGTCGCGA--CGCCGC CTCAC GCGGCGCCTCGCGGCC AATCGTTAAAATTTT RHE_CH00214 227446 - 227805 + | insertion sequence transposase protein, ISRM11/ISRM2011-2 TERM 217 227853 - 227884 + F 86 -11.6 -4.15044 | gap 1, opp_overlap 227849 227860, overlap 227858 CTCGCTGGAAAGCCT GGCAAGACCGCTTCG ATC CGAAGCGG-CTCGTC TTTATTGACGAGACC TERM 218 227858 - 227881 + F 71 -11.8 -2.80244 | gap 1, opp_overlap 227849 227860, overlap 227853 TGGAAAGCCTGGCAA GA-CCGCTTCG ATC CGAAGCGGCTC GTCTTTATTGACGAG TERM 219 227878 - 227860 - f 80 -14.6 -3.03635 | opp_overlap 227858 227853 GAAAGCCTGGCAAGA CCGCTTCG ATC CGAAGCGG CTCGTCTTTATTGAC RHE_CH00215 227915 - 228394 + | insertion sequence transposase protein, ISRm2011-2 RHE_CH00216 228427 - 228777 + | MarR family transcriptional regulator RHE_CH00217 228789 - 229646 + | putative endopeptidase-related protein gatA1 231034 - 229643 - | amidase RHE_CH00219 231897 - 231034 - | peptide ABC transporter permease RHE_CH00220 232848 - 231901 - | peptide ABC transporter permease TERM 220 232948 - 232919 - R 70 -12.1 -2.55351 | overlap 232918 232922 GCTTGTCACAGGAAT CCAGCCACGGCGC CTCG GCGCCGTGAATGA CTGTCACACAAGCAA RHE_CH00221 234642 - 233113 - | peptide ABC transporter substrate-binding protein RHE_CH00222 235790 - 234753 - | putative peptidase protein TERM 221 235497 - 235467 - G 77 -12.7 -3.59979 | gap 2, overlap 235468 235471 TGCCCCGACTGCAAA GCCACGGCCGGCTTG GCG CAAGCCGGCC-T-GC ACGCCGCCGGCCGCA TERM 222 235495 - 235471 - G 77 -15.7 -2.65354 | overlap 235467 235468 CCGACTGCAAAGCCA CGGCCGGCTTG GCG CAAGCCGGCCT GCACGCCGCCGGCCG TERM 223 235836 - 235805 - R 84 -6.5 -5.00884 | overlap 235808 ATTGCCCTCAAAAAA CAAGACCGGCCCT TTTTGC AGGACCGGTCACA TCAGAAAAGCCGAGA TERM 224 235833 - 235808 - R 95 -12.6 -4.61482 | overlap 235805 GCCCTCAAAAAACAA GACCGGCCCT TTTTGC AGGACCGGTC ACATCAGAAAAGCCG RHE_CH00223 236070 - 235876 - | hypothetical protein TERM 225 236556 - 236543 - R 76 -6.7 -4.56597 | opp_overlap 236553 CCTCGTCGCTAAAAA TCGAG GTGC CTCGA AATGATCGATTTGGT RHE_CH00224 239518 - 236591 - | hypothetical protein TERM 226 238390 - 238374 - G 76 -5.7 -4.56597 | overlap 238375 TTGCCGGCGGAAAAA TGCGCGC TCC GCACGCC GAGATCGACATAGGC purU 240521 - 239637 - | formyltetrahydrofolate deformylase exoZ 241846 - 240830 - | exopolysaccharide production (acetyltransferase) protein TERM 227 241753 - 241740 - G 83 -5.2 -4.99043 | TCGCCATAAAGAAAA GCCG TGGCGT CGGC GGCGGGATTGACCTT RHE_CH00227 243066 - 241900 - | hypothetical protein TERM 228 242616 - 242596 - G 84 -8.2 -4.41494 | opp_overlap 242595 242596 GATGCCGAAGGAAAA GCGCTCGG GGAAG CCGAGGGC GTTCTGGAACAGGCC egl 244232 - 243183 - | endoglucanase precursor (cellulase) protein TERM 229 245863 - 245878 + G 72 -7.5 -4.24342 | overlap 245847 245861 TCGCCGGTATCATCG GCGGC TTCCTC GCCGC TTTCTTCCTGGGCGC RHE_CH00229 244368 - 245975 + | succinoglycan biosynthesis transport protein RHE_CH00230 246037 - 246369 + | hypothetical protein RHE_CH00231 246910 - 246548 - | hypothetical protein RHE_CH00232 248244 - 247189 - | hypothetical protein TERM 230 249509 - 249496 - g 72 -2.3 -4.81083 | overlap 249497 CGCAATTATGAAAAA GCTCG GGAT CGAGG AGGAGTTTGAGTTGG RHE_CH00233 248675 - 249550 + | hypothetical protein RHE_CH00234 250375 - 249731 - | hypothetical protein TERM 231 250896 - 250917 + r 72 -9.5 -3.65314 | CAGGAGCGCCCAATG GTCACCTTT TTTC AAAGGTGGC TTATTCGGAATTGGA RHE_CH00235 251791 - 251222 - | recombinase TERM 232 251839 - 251815 - H 70 -11.5 -3.04144 | opp_overlap 251813 251825, overlap 251825 CTCGCATGTCTAAGA GTTTCAGAGAG TCT CTCTCTGAGAC ATGTGAGAGACTCTG RHE_CH00236 252008 - 252757 + | restriction system protein RHE_CH00237 252882 - 253244 + | insertion sequence transposase protein, ISRm14 RHE_CH00238 253241 - 253588 + | insertion sequence transposase protein RHE_CH00239 253661 - 255226 + | insertion sequence transposase protein RHE_CH00240 255226 - 255531 + | hypothetical protein RHE_CH00241 257631 - 256048 - | phage integrase family recombinase protein TERM 233 257930 - 257903 - H 81 -4.7 -5.02476 | opp_overlap 257922 ACAGTCTGCAAAAAA CAGCCGATCAC ATGCGA GGGAGCGGCCG GAGGGGAGGCGTAGC TERM 234 257922 - 257963 + H 74 -12.9 -2.87344 | gap 1, opp_overlap 257903 CGATCACATGCGAGG GAGCGGCCGGAGGGGAGGCG TAG CGCTTCGC-TCCGGGCGCCC TATATAGGGAGAATA RHE_CH00243 257995 - 258402 + | hypothetical protein RHE_CH00244 258707 - 258414 - | hypothetical protein RHE_CH00245 258833 - 259570 + | putative glutamine amidotransferase protein nodL 259582 - 260139 + | maltose O-acetyltransferase protein RHE_CH00247 260213 - 260665 + | hypothetical protein TERM 235 260757 - 260789 + T 85 -16.5 -2.71263 | opp_overlap 260751 CCCTAACGATCTCCT CGTCTTATGCGCA AATCACA TGCGCATAAGACG TCATTGAGAAGCGTT lepA 262635 - 260803 - | GTP-binding protein LepA RHE_CH00249 263411 - 262713 - | TenA family transcription regulator TERM 236 263300 - 263273 - G 78 -10.6 -4.08767 | gap 1 TGTAGTGGCGGAAAA CCTCCGG-CGGCA GTG TGCCGTCCGAAAG CCGTTCCAAGAGCGG RHE_CH00250 263547 - 264116 + | LacI family transcription regulator RHE_CH00251 264141 - 264659 + | acetyltransferase protein RHE_CH00252 265285 - 264641 - | haloacid dehalogenase-like hydrolase aphA 265419 - 266444 + | acetylpolyamine aminohydrolase protein TERM 237 266914 - 266885 - g 89 -11.5 -4.26076 | opp_overlap 266891 CGAGCTTGACGAAAA GCGAAAGGCCAAA GAGC TTTGGGCCTTCGC TCGCAACGGCTTCAG recX 266454 - 267005 + | recombination regulator RecX TERM 238 267653 - 267641 - g 82 -3.3 -5.24129 | CGTCCTGACAAAAAA GATCG GCG CGAGC TTCAAGGGGCTGGAA RHE_CH00255 267099 - 267992 + | permease protein RHE_CH00256 268460 - 267993 - | hypothetical protein TERM 239 268190 - 268160 - G 76 -5.5 -4.58395 | gap 2, overlap 268162 268163 GCCACTTCGGAAAAA GAT-CGGGCG-TCAG GTT CTGAACGCCCGTATG CGCCTGCACCGGCTT TERM 240 268187 - 268162 - G 74 -9.7 -3.90762 | gap 1, overlap 268160 268163 CACTTCGGAAAAAGA TCGGGCG-TCAG GTT CTGAACGCCCGT ATGCGCCTGCACCGG TERM 241 268186 - 268163 - G 70 -13.2 -2.93975 | gap 1, overlap 268162 268160 ACTTCGGAAAAAGAT CGGGCG-TCAG GTT CTGAACGCCCG TATGCGCCTGCACCG TERM 242 269564 - 269596 + G 95 -9.9 -4.41494 | overlap 269567 269568 CCGCCTTCCAGGTCG TGCTCGGCGGCG-GC CTCGT GCTCGCCGCCG-GTA TTTTGATTGGGAATG TERM 243 269567 - 269594 + G 81 -12.7 -3.8125 | gap 1, overlap 269564 269568 CCTTCCAGGTCGTGC TCGGCGGCG-GC CTCGT GCTCGCCGCCGG TATTTTGATTGGGAA TERM 244 269568 - 269593 + G 74 -14 -2.88268 | gap 1, overlap 269567 269564 CTTCCAGGTCGTGCT CGGCGGCG-GC CTCGT GCTCGCCGCCG GTATTTTGATTGGGA RHE_CH00257 268633 - 269616 + | hypothetical protein TERM 245 270085 - 270066 - T 100 -10.6 -4.85782 | opp_overlap 270067, overlap 270067 CTCCCCAAAAACAAA GGGCCGGC TTTC GCCGGCCT TTCCCCACGTCCCCC TERM 246 270067 - 270084 + T 86 -14.1 -3.54424 | opp_overlap 270066 270067 TCCCCAAAAACAAAG GGCCGGC TTTC GCCGGCC TTTCCCCACGTCCCC TERM 247 270084 - 270067 - T 85 -14.1 -3.50746 | opp_overlap 270067, overlap 270066 TCCCCAAAAACAAAG GGCCGGC TTTC GCCGGCC TTTCCCCACGTCCCC RHE_CH00258 270622 - 270110 - | hypothetical protein RHE_CH00259 271671 - 270856 - | putative hydrolase protein infC 271883 - 272389 + | translation initiation factor IF-3 TERM 248 272372 - 272400 + F 85 -8.2 -4.72272 | gap 1 CGTCAGATGATGATG GTG-CTGGCGC CGAAGTAA GCGCCAGACAC TTTTTGCTCGAGGCC TERM 249 272413 - 272430 + F 88 -10.5 -4.4715 | CACTTTTTGCTCGAG GCCGTCC GCAA GGGCGGC TTTTATGCGTTCGGC TERM 250 272612 - 272656 + F 86 -9.2 -4.72272 | gap 1, opp_overlap 272598, overlap 272615 ACAACAAATGCTCCC GCACCTTGTTGCGACGGCCGG AGAA CCGGACTTCGCGAGGAGG-GC TTTTTGATGAAGCGC rpmI 272698 - 272901 + | 50S ribosomal protein L35 TERM 251 273316 - 273368 + G 84 -2.1 -5.2696 | gap 3 AAGGAAACCGGCACG GCGAACGAGTTT-GAAGGCGC-GGTT CGGT AACCAGCGCTTCCCAAGCTTGA-CGC TTTTTTGAATTTTGG rplT 272941 - 273345 + | 50S ribosomal protein L20 TERM 252 273382 - 273419 + F 100 -14.9 -4.69415 | opp_overlap 273388, overlap 273388 GCTTTTTTGAATTTT GGGAAACCCGCGCTGGT TTGG GCTGGCGCGGGTTTTTC TTTCTTTATATTCCT TERM 253 273388 - 273413 + F 100 -12.5 -5.56573 | opp_overlap 273388, overlap 273382 TTGAATTTTGGGAAA CCCGCGCTGGT TTGG GCTGGCGCGGG TTTTTCTTTCTTTAT pheS 273498 - 274580 + | phenylalanyl-tRNA synthetase subunit alpha TERM 254 274785 - 274759 - g 100 -12.3 -4.56597 | CTCTCGGCGGAAAAA CACCCCCAGGC CGATC GCCTGAAGGTG CTGATGGTCGATACC TERM 255 274846 - 274866 + G 70 -10.3 -3.53811 | opp_overlap 274846, overlap 274847 GGTGCCCCGAATGCA CGCGCCGGC CTC GTCGGCGCC TTTGCCGCACCTGGA TERM 256 274847 - 274865 + G 72 -13.8 -2.72144 | opp_overlap 274846, overlap 274846 GTGCCCCGAATGCAC GCGCCGGC CTC GTCGGCGC CTTTGCCGCACCTGG TERM 257 276353 - 276333 - g 73 -6.8 -4.2828 | gap 1, opp_overlap 276352, overlap 276334 276336 CGGCACCTATGAAAA CGACCGGCC GGAA GGCCAG-CG CCGTGTCGCCGGCGG TERM 258 276352 - 276387 + G 87 -19 -2.52543 | gap 1, opp_overlap 276333 276334, overlap 276376 CGGCCGGAAGGCCAG CGCCGTGTCGCCGGCGG CAT CCGCCG-CGGCACGGCC TCGCTTGCCGGCGCT pheT 274597 - 277020 + | phenylalanyl-tRNA synthetase subunit beta TERM 259 277045 - 277068 + T 100 -16 -4.39166 | opp_overlap 277043 277040 GCCGAAGATAGGATG GACCGGTCGC GCAA GCGGCCGGTC TTTTCATGTGTGCAG RHE_CH00265 277431 - 277072 - | hypothetical protein TERM 260 277488 - 277512 + r 75 -11.3 -3.52102 | opp_overlap 277466 277488 CGACCGCGAAGGCAA GCCCGGCCGGT CGC AACTGCCGGGC TTGTCTGCCTCAAAT TERM 261 277512 - 277488 - R 71 -11.3 -3.17723 | opp_overlap 277488, overlap 277466 CGACCGCGAAGGCAA GCCCGGCCGGT CGC AACTGCCGGGC TTGTCTGCCTCAAAT RHE_CH00266 278517 - 277522 - | aldo/keto reductase family oxidoreductase TERM 262 278052 - 278067 + g 71 -9 -3.76952 | opp_overlap 278052 TGCCGGCTTCCGAAA GTCCGA GCGC TCGGAC TTTGCCTTCCCTCAC TERM 263 278228 - 278186 - G 81 -15.5 -3.05935 | opp_overlap 278211 278227 AGACGTTTCAGCGAA GCCTCGGCAACCGCCCTGA CATGT TCGGGGCGGCTGTCGACGC CGGCGATGGCGGCAG TERM 264 279491 - 279470 - g 71 -12.9 -3.09516 | opp_overlap 279489 TCGTCTATTATCCAA GCCGGCGGC AGAT GCGGCCGGC GCTGCGCGCCTTCAT RHE_CH00267 278641 - 279549 + | LysR family transcriptional regulator RHE_CH00268 280074 - 279577 - | hypothetical protein TERM 265 279901 - 279891 - G 78 -6.8 -4.57569 | CGATCTTTTCAAAAA CCTG CTG CAGG CGCTCGACTTGGGCT RHE_CH00269 280222 - 280839 + | hypothetical protein RHE_CH00270 281272 - 280829 - | acetyltransferase protein RHE_CH00271 282231 - 281269 - | aldo/keto reductase family oxidoreductase RHE_CH00272 282418 - 283404 + | oxidoreductase protein RHE_CH00273 283782 - 283408 - | hypothetical protein TERM 266 283498 - 283444 - G 74 -10.6 -3.68302 | overlap 283452 283455 CGAATAGCCGAAGAA GCTGAAGACCATTGCGGCGATACTGG CGA CCACCATCGCCGCAAGCGGCTGAAGC CCCGGCAGCGAAAGC TERM 267 283491 - 283452 - G 80 -14.4 -3.12749 | gap 1, overlap 283444 283455 CGAAGAAGCTGAAGA CCA-TTGCGGCGATACTGG CGA CCACCATCGCCGCAAGCGG CTGAAGCCCCGGCAG TERM 268 283487 - 283455 - G 84 -17.1 -2.76313 | overlap 283452 283444 AGAAGCTGAAGACCA TTGCGGCGATACTGG CGA CCACCATCGCCGCAA GCGGCTGAAGCCCCG RHE_CH00274 284786 - 283779 - | glycosyltransferase TERM 269 284411 - 284378 - G 72 -7.3 -4.12456 | gap 1 AGAGCAGGTTGAAAA GCCGGTTGCCAAGCGC ATG GC-CCTGACGGCCGGC ATCGTCATGCACGCC TERM 270 285142 - 285157 + G 72 -4 -4.63218 | gap 1, opp_overlap 285126 285128 ACGACGGCATGCGTC TCGTCGA GGT TCG-CGA TTTTCTTGCCGGCCA RHE_CH00275 284949 - 286796 + | hypothetical protein TERM 271 287214 - 287233 + F 81 -2.9 -5.24416 | gap 1 TATCTATGCGTTCCC CGGCGAAA CGAAT TTTC-CCG TTTTTCTTGTCATTC TERM 272 288963 - 288951 - g 76 -6.9 -4.47328 | overlap 288952 AAGCGCAGCACAAAA CCGGC GGA GCCGA CGAAGCAGGGAAGCC xseA 287406 - 288986 + | exodeoxyribonuclease VII large subunit RHE_CH00277 288989 - 289579 + | NAD(P)H dehydrogenase (quinone) protein RHE_CH00278 290077 - 289580 - | MarR family transcriptional regulator TERM 273 290947 - 290965 + Gr 89 -13.1 -3.86916 | CGGCCAGAGCCTGAC GCCGGCG CAGAT CGCCGGC TTTGCTATGGTGCTC RHE_CH00280 292271 - 291018 - | aminopeptidase protein RHE_CH00279 290159 - 291070 + | putative transporter, permease protein (related to regulator protein pecM) TERM 274 291656 - 291631 - GT 71 -4.6 -4.43477 | opp_overlap 291636, overlap 291620 291625 TGCAGCGAAGCAAAA CGCTCGCCGT TCAGCC AGGCCGAGCG CTTGGCGAGATTGGC TERM 275 292388 - 292364 - TR 100 -19.3 -3.59979 | GCTGCCGATTTGAAA GCGGCCGGGCA CCA TGCCCGACCGC CTTCGCGCAAGCGTC gstch1 293085 - 292402 - | glutathione S-transferase protein RHE_CH00282 293111 - 293611 + | MarR family transcriptional regulator RHE_CH00283 294085 - 293612 - | hypothetical protein RHE_CH00284 294439 - 294089 - | arsenate reductase protein TERM 276 294519 - 294492 - R 81 -12.6 -3.60475 | AAGCGCCAGCGCAAA CGCCGCCCGGCA TTTA TCCCCGGCGGCG CCTGCTCAACTCTCC RHE_CH00285 295586 - 294525 - | hypothetical protein TERM 277 295709 - 295719 + H 71 -4.6 -4.56597 | CCAAAGATCGATGAT CCGG TGT TCGG TTTTTCCGAGAACGC RHE_CH00287 296158 - 296721 + | methylated-DNA-[protein]-cysteine S-methyltransferase protein TERM 278 296699 - 296714 + T 76 -6.8 -4.57073 | overlap 296700 CCCCGCCGCCGCCGG TCCAGC AATC GCTGGG TTTTTAGGGGAAATG RHE_CH00288 297472 - 296738 - | putative oxidoreductase protein TERM 279 297044 - 297013 - G 75 -13.6 -3.06696 | gap 1 TCGTCGCGCAATAGA CGGCGGCCGTCGGCG AGA CGCTGT-GGCCGCCG ATCGAGGACAGGTTG RHE_CH00289 298351 - 297509 - | short chain dehydrogenase TERM 280 298368 - 298384 + r 74 -7.2 -4.2349 | GTCGTCATCCTTTCC GGCCGT CCTAT GCGGCC TTTTCGGTGTGCGGG RHE_CH00290 298802 - 298404 - | hypothetical protein TERM 281 298471 - 298459 - G 71 -9.1 -3.72576 | TTGTCGTCGACGAAA TCGCC GTC GGCGA TGAAGCCCGTATCGT RHE_CH00291 298903 - 299799 + | LysR family transcriptional regulator RHE_CH00292 299944 - 300798 + | AraC family transcriptional regulator RHE_CH00293 300838 - 301383 + | putative phosphatidylethanolamine-binding protein TERM 282 301410 - 301451 + T 86 -16.5 -2.78384 | opp_overlap 301414 CAGCTATTGTCCCCA TAGAGCATGGCCGGCCGAG GAAC CTTGGCCGGCCATGCCCGC TCTCATGCAGGCAAA TERM 283 301447 - 301414 - T 100 -22.5 -2.87344 | opp_overlap 301410 TATTGTCCCCATAGA GCATGGCCGGCCGAG GAAC CTTGGCCGGCCATGC CCGCTCTCATGCAGG RHE_CH00294 301937 - 301467 - | putative acetyltransferase protein TERM 284 301907 - 301882 - G 71 -12.5 -3.05963 | overlap 301869 AGGCGCAGGTTAAGA GGCGCGCTGCC CTTC AGCAGCGCGTC AAAATCAATAGGCGT RHE_CH00295 302695 - 302165 - | putative reductase protein RHE_CH00296 302939 - 303724 + | hypothetical protein guaA 305507 - 303945 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 285 304533 - 304547 + g 74 -5.6 -4.49906 | opp_overlap 304534, overlap 304529 304523 304534 GCCCTGGCCGAGGAA ATCGGC GCC GCCGAG TTTCTTTGCCTCTTC TERM 286 304546 - 304534 - G 71 -9.1 -3.72576 | opp_overlap 304533 304529 304523 304534 CCCTGGCCGAGGAAA TCGGC GCC GCCGA GTTTCTTTGCCTCTT pfs 306244 - 305606 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase RHE_CH00299 306690 - 306241 - | putative phenylacetic acid degradation protein TERM 287 306879 - 306891 + H 70 -10.5 -3.23393 | overlap 306877 TGGTGATTGCAGCTT CGCGC GAA GCGCG TATTCTCGCATCGAA RHE_CH00300 307031 - 307843 + | hypothetical protein RHE_CH00301 309083 - 307986 - | hypothetical protein TERM 288 309129 - 309112 - R 93 -10.5 -4.67038 | opp_overlap 309123, overlap 309123 GTCCGAAAAGGAAAA GCCGGCC GAAA GGCCGAC GGCCGAGCCATATTC RHE_CH00302 310188 - 309088 - | hypothetical protein RHE_CH00303 311726 - 310188 - | hypothetical protein TERM 289 310342 - 310332 - G 72 -2.4 -4.7497 | GTCATGCAGGAAAAA GCTG TGT CCGC TGACAGTCCGGGTCA TERM 290 310981 - 310945 - G 74 -13.8 -2.90723 | gap 2 GCATGGGCAAGGATA TCGGCCGCGGG--GATCG CCT CGATCAGCCCGAGGCCGA TCATGGCGGGGGCGA TERM 291 311734 - 311766 + r 79 -9.7 -4.14764 | overlap 311703 311733 311735 TGCGACATTTCAGGG TCCGGGCCGCTCCGA CTT TTGAAGCGGCCCGCC TTTGCTTATTTGAAG TERM 292 311735 - 311765 + r 75 -13.2 -3.08135 | overlap 311703 311733 311734 GCGACATTTCAGGGT CCGGGCCGCTCCGA CTT TTGAAGCGGCCCGC CTTTGCTTATTTGAA RHE_CH00304 313046 - 311772 - | hypothetical protein TERM 293 312275 - 312306 + g 76 -10.8 -3.81146 | gap 1 TGCCCGTCAGGATCG CGACGAGGCCGG-CC TTC GGATCGGCTTCGACG TTCTTCGTTGCGGCA sun 314504 - 313215 - | tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein TERM 294 313514 - 313467 - G 74 -9.1 -3.85698 | gap 3, opp_overlap 313475 GCCCGTTTTGACAAA GCCGCTCGC-CTGCGCCAGC-GCA TCC TGCTGCTGG-GCGGTGCGCTCGGC GAGGTTTTTTGCCGT TERM 295 313475 - 313518 + g 93 -7.6 -5.0538 | gap 4, opp_overlap 313467 TGACAAAGCCGCTCG CCTGCGCC-AGCGCATCCTGCT GCTG GGC-GG-TGCGCTCGGCG-AGG TTTTTTGCCGTCAAC RHE_CH00306 315023 - 314661 - | rare lipoprotein A protein RHE_CH00307 316290 - 315421 - | putative nucleoside-diphosphate-sugar epimerase protein RHE_CH00308 317447 - 316290 - | putative iron-sulfur cluster binding protein TERM 296 317406 - 317418 + g 70 -10.5 -3.61175 | overlap 317404 CTCGGTCAAATTGTC GCGGC GCC GCCGC TCTTTGTCATCTCTA gstch2 318152 - 317460 - | glutathione S-transferase protein upk 318411 - 319208 + | undecaprenyl pyrophosphate phosphatase TERM 297 319250 - 319221 - T 84 -13.7 -3.57792 | opp_overlap 319225 TGAGGCACCTGCAAA TGCATTCGCGC AACTCCCG GCGCGAATGCA TTGCCCGTCGGAATT TERM 298 319397 - 319415 + T 100 -13.8 -4.7497 | CTTGTCTTCGTAGAT GCCGGCGC AAG GTGCCGGC TTTTTCGTCAATGGC RHE_CH00311 319764 - 319423 - | hypothetical protein TERM 299 319855 - 319831 - R 93 -10.7 -4.54727 | gap 1, opp_overlap 319833, overlap 319808 319832 319833 TGCGGCAAAGCAAAA CGCCGC-CCG CCGGAT CGGCGCGGCG CTATCGTTCCTCGGG RHE_CH00312 320859 - 319879 - | NADH dehydrogenase/NADH dehydrogenase (ubiquinone) protein TERM 300 320434 - 320451 + g 74 -9.8 -3.72893 | opp_overlap 320434 320433 CTTGATGGAGAGAAT GGCCGC TTCCGC GCGGCC TTTGGTGCGGCCATA TERM 301 320910 - 320945 + r 100 -14.6 -4.11216 | overlap 320911 320914 TCCCGTCTTAGCCCA ATCCCGGCGCGACGGG AAGG CCCATCGCGCCGTGAG TTTTGCGGGTGCGAA TERM 302 320911 - 320944 + r 90 -18.1 -3.06515 | overlap 320910 320914 CCCGTCTTAGCCCAA TCCCGGCGCGACGGG AAGG CCCATCGCGCCGTGA GTTTTGCGGGTGCGA TERM 303 320914 - 320941 + r 88 -18.4 -2.75081 | overlap 320911 320910 GTCTTAGCCCAATCC CGGCGCGACGGG AAGG CCCATCGCGCCG TGAGTTTTGCGGGTG RHE_CH00313 321253 - 320966 - | hypothetical protein pyrF 321983 - 321276 - | orotidine 5'-phosphate decarboxylase TERM 304 321880 - 321866 - G 72 -4.2 -4.57073 | opp_overlap 321867, overlap 321867 GACCGCCGGCAAAAA CCAGCT GAT AGCCGA TCTTATAAAAGAGAA RHE_CH00315 322570 - 321989 - | hypothetical protein RHE_CH00316 323171 - 322572 - | phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolaminen-methyltransfer ase protein RHE_CH00317 324172 - 323267 - | hypothetical protein dnaN 325345 - 324227 - | DNA polymerase III subunit beta TERM 305 325790 - 325804 + G 73 -7 -4.25283 | opp_overlap 325790 TCGCATGCGAGGATA CGCGCG TCA CCCGCG TTTTGCTCGACCGCT RHE_CH00319 325438 - 326520 + | methyltransferase protein RHE_CH00320 326564 - 326878 + | putative endonuclease protein TERM 306 327337 - 327348 + G 83 -7.2 -4.58395 | overlap 327336 CGGACTCTGTGCCCC GGCG ACGT CGCC TTTTTCGCAGGTGGA RHE_CH00321 327034 - 327501 + | hypothetical protein gshB 327589 - 328536 + | glutathione synthetase TERM 307 329160 - 329132 - g 72 -13.8 -2.71712 | gap 1, opp_overlap 329112, overlap 329131 CTGCCCGGCCGAAAG CGGCGCCGAGGCC GCTT GGGC-CGGCGCCG AGGTCAATATCCTCG RHE_CH00323 328710 - 330242 + | Mg-chelatase protein TERM 308 331057 - 331040 - g 100 -14.1 -4.40561 | opp_overlap 331039 331038 331036, overlap 331037 TGCGGCGAAAAAGAA GGGGCGC CGAA GCGCCCC GATATTGTGCGAGAT RHE_CH00324 330497 - 331111 + | hypothetical protein cysK1 332070 - 331108 - | cysteine synthase protein TERM 309 331960 - 331971 + g 83 -7.2 -4.56597 | CTTGCCGATCAGGTT GGCG ACAA CGCC TTTTTCCCGCGCCAG RHE_CH00326 332835 - 332218 - | amino acid efflux LysE family protein RHE_CH00327 333855 - 332953 - | putative transporter permease protein RHE_CH00328 333968 - 334432 + | AsnC family transcriptional regulator RHE_CH00329 335346 - 334447 - | putative acetyltransferase protein TERM 310 334511 - 334484 - G 73 -8.5 -4.08945 | opp_overlap 334508, overlap 334455 AGCATCGCCGGAAAA TGCG-GGGCGTCG TCGC CGA-GCCCGCGCA GCATCAGCGTCGTTC TERM 311 335079 - 335049 - G 71 -8.2 -3.88787 | gap 1 TTAGATCGCGATAAA GC-CCGCGGCCGC GCCACT GCGGCCGCACCGC GCCCGATTGCAGCCC dut 335816 - 335346 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 312 335372 - 335386 + g 81 -12.8 -3.75153 | opp_overlap 335351 335367 TGGAACCGAAGCCGC CGGCGC CGC GCGCCG TTTCGCTTGCCGCGG TERM 313 336525 - 336469 - g 78 -15.8 -2.73994 | overlap 336466 336492 336499 ATCTTGCCAATAGCA CCGCCCGCGGCTCCGAC-ACCGAAGTCG AAA CGACGCCGGTCAACGGC-CCGCAGGCGG TCGCCGACAGGCTGC TERM 314 336602 - 336548 - g 76 -9.2 -4.07885 | gap 1, opp_overlap 336548, overlap 336549 336551 CAGGCTGCCGGAAAA CGAGCGCCAGGCCTTCATCGACGAG ACCGAG CTCGCCATCGA-GGCCTGCCGCCCC TTCGATCGCGACTCC TERM 315 336601 - 336549 - g 71 -12.7 -3.04517 | gap 1, opp_overlap 336548, overlap 336548 336551 AGGCTGCCGGAAAAC GAGCGCCAGGCCTTCATCGACGAG ACCGAG CTCGCCATCGA-GGCCTGCCGCCC CTTCGATCGCGACTC prfC 335907 - 337490 + | peptide chain release factor 3 protein TERM 316 337492 - 337467 - f 82 -13.3 -3.39895 | overlap 337469 GTCGCCATCAAGGAA TATCACGCCGC CAAG GCGGCGTGATC GGGGGTCTTGGAAGA TERM 317 337490 - 337469 - f 87 -15.9 -3.27029 | overlap 337467 CGCCATCAAGGAATA TCACGCCGC CAAG GCGGCGTGA TCGGGGGTCTTGGAA TERM 318 337973 - 337946 - g 78 -3.3 -5.06414 | GGTCGTCAACAAAAA GCGTGTGCTCG TCAATC CGAAGACCCGC ACAGTGATCGAGGTC RHE_CH00332 337818 - 337997 + | hypothetical protein TERM 319 338044 - 337998 - T 100 -21.8 -3.61715 | opp_overlap 338001 338005, overlap 337999 338005 GAGGTCGTCCAATAA CGTCAAAGGATCGCGAGCCT GCTTCCG AGGCTCGCGATCCTTTGTCA TTCCACCTTCCAACG TERM 320 338043 - 337999 - T 100 -23.1 -2.76815 | opp_overlap 338001 338005, overlap 337998 338005 AGGTCGTCCAATAAC GTCAAAGGATCGCGAGCCT GCTTCCG AGGCTCGCGATCCTTTGTC ATTCCACCTTCCAAC TERM 321 338001 - 338041 + T 100 -24.3 -2.73542 | opp_overlap 337999 337998 338005, overlap 338005 GTCGTCCAATAACGT CAAAGGATCGCGAGCCT GCTTCCG AGGCTCGCGATCCTTTG TCATTCCACCTTCCA TERM 322 338005 - 338037 + T 100 -19.3 -4.05714 | opp_overlap 337999 337998 338005, overlap 338001 TCCAATAACGTCAAA GGATCGCGAGCCT GCTTCCG AGGCTCGCGATCC TTTGTCATTCCACCT TERM 323 338037 - 338005 - T 100 -19.3 -3.72051 | opp_overlap 338005 338001, overlap 337999 337998 TCCAATAACGTCAAA GGATCGCGAGCCT GCTTCCG AGGCTCGCGATCC TTTGTCATTCCACCT TERM 324 338254 - 338240 - T 71 -8.6 -3.90112 | opp_overlap 338239 CGCTCTGGAAGGAAA TGTCAG GGA CTGACA GGTTGTCGCTGGAGG RHE_CH00333 339312 - 338242 - | putative acetyltransferase protein RHE_CH00334 340848 - 339628 - | HlyD family protein secretion protein TERM 325 339699 - 339687 - G 79 -9.1 -4.20516 | overlap 339690 CGGCGAGGTAAGAAA GCACG GTG CGTGC ACCCGTCCGGATCAT TERM 326 340839 - 340791 - G 84 -15.2 -3.33261 | gap 1 CGGCAACCTTGACAA GGCCGGGCGCCAC-TGCGGCGCT GTCC AGCGGTGCAAGCGTCGCCCAGCC TCCGGCCATGCCGAA RHE_CH00335 342704 - 340959 - | putative protein transport protein TERM 327 341461 - 341437 - G 74 -13.7 -2.89742 | GCGAAGCGGCAGATA TTTTCGCAGAC GTT GCCTGCGAAAA GCTCGATGTCCTGCG TERM 328 342638 - 342656 + g 73 -8.8 -4.0825 | opp_overlap 342635 342636 TGAACCAGATAAGCG GCCGGATG GCC CGTCTGGC TTCTTTCATTACAAC TERM 329 342750 - 342773 + r 100 -19.6 -3.80858 | TTGCGCGATGGATCA CGGGGGCAGC GAAT GCTGCCCCCG TTTGGTCAGTTGTCA RHE_CH00336 346343 - 342786 - | hypothetical protein TERM 330 346430 - 346477 + r 79 -14.2 -2.73542 | opp_overlap 346430 CTCTTGCGTATTGAA CCTAGAGCTCTCGATCGACTGC GATT GTGGTCGATCGAGAGGACTAGC TCATTCACAGTTGGA RHE_CH00337 347354 - 346953 - | hypothetical protein RHE_CH00338 348858 - 347365 - | putative carboxypeptidase-related protein RHE_CH00339 350271 - 348982 - | cyanate transport protein RHE_CH00340 350945 - 350268 - | GntR family transcriptional regulator TERM 331 351048 - 351031 - H 100 -10.5 -5.4833 | opp_overlap 351031 TCAGGCAATAAAAAA GGGCCGC CTCG GCGACCC TTTCCATGAGTTTGG TERM 332 351115 - 351130 + H 77 -10.4 -3.76379 | AAGGCGGGTTTTAGA GCGAGG GCTG CCTCGC TTTCGTCACCTCTTC RHE_CH00341 351451 - 352263 + | putative glutamine amidotransferase protein dfp 353594 - 352386 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 333 352545 - 352532 - G 71 -8.1 -3.85817 | opp_overlap 352531 352538 352539 AGGTCGCCGGAGAAA CGTCG TTGG CGACG ATCATGTCGGCGCCC TERM 334 353092 - 353119 + g 85 -14.8 -3.56643 | ATGTCGAGCGGTTCC GCCATGCGGCCG AGCC CGGCCTCGTGGC TTTCCGCCATCTCGC RHE_CH00343 354517 - 353753 - | short chain dehydrogenase RHE_CH00344 354643 - 355554 + | LysR family transcriptional regulator TERM 335 355654 - 355613 - f 82 -13.3 -3.41878 | opp_overlap 355615 CTCTTTAATGTAGAA CAGGATTCAGATTTTAG GCCCACCG CTCAAATCTGAATCCTG TCTAACCCATGAATT TERM 336 355775 - 355789 + G 89 -11.4 -4.3467 | CCGGTGCCTATCGCC GCGCCA GCC TGGCGC TTTTCCTCTCCGGCT RHE_CH00345 355693 - 356931 + | putative transporter permease protein TERM 337 356977 - 356992 + G 79 -9 -4.19177 | overlap 356973 TGACCGTCGCCGATA TCGCAG CCAC CTGCGA TTTCTATTCCCGCAT TERM 338 357241 - 357258 + G 91 -9.1 -4.41348 | opp_overlap 357217 357216, overlap 357215 357236 AACGCACCGGCGCGA CCGGACG GTTG CGTTCGG TTTATTTCCGAGACC RHE_CH00346 356928 - 357314 + | putative biphenyl-2,3-diol 1,2-dioxygenase protein hutUch 359006 - 357345 - | urocanate hydratase TERM 339 359031 - 359069 + r 82 -15.5 -2.8007 | gap 1, overlap 359028 CTCGCTTGGTTCTCT GCT-TTTCCCTTCTTCCC GGCC GGGGAGAAGGGGAATAGC TAATTGGTCACTTGC RHE_CH00348 359406 - 359077 - | hypothetical protein RHE_CH00349 360480 - 359410 - | hypothetical protein RHE_CH00350 361768 - 360488 - | allantoate amidohydrolase RHE_CH00351 363144 - 361765 - | allantoinase protein hutHch 364858 - 363281 - | histidine ammonia-lyase protein TERM 340 363475 - 363458 - G 76 -6.9 -4.4009 | overlap 363460 GTCGACGGTATAAAA GGCCGCA TGTT TGCGGAC GACCTCATAGAGCAT TERM 341 363601 - 363545 - G 85 -15.3 -3.48276 | gap 3 CGCCTGGGCAGACAA GAGCGCCTCGAGTGCC-G-CG-AGGCGC TTCA GCGCCTGCATCTGACGCTCGAAGCGCTC GATGACCAGCGGCAG aarF 366523 - 364949 - | ubiquinone biosynthesis protein TERM 342 366078 - 366090 + g 70 -10.5 -3.57144 | ACGGCGACCTTCTTG CGGCC TCC GGCCG TTTCGACCTCAGCCG ubiE 367350 - 366574 - | ubiquinone/menaquinone biosynthesis methyltransferase fpg 367500 - 368390 + | formamidopyrimidine-DNA glycosylase fadB1 368411 - 369184 + | enoyl-CoA hydratase TERM 343 369419 - 369403 - g 86 -6.5 -5.00884 | ACTTCGGCGAAAAAA GCGACCC GCA AGATCGC CCGCCGTACCGACGT rpsT 369376 - 369654 + | 30S ribosomal protein S20 TERM 344 369686 - 369705 + F 100 -11.4 -4.74504 | TCCTCGTTATGATTA GCCCGGTA ATTT TGCCGGGC TTTTTCGATTCCGCT TERM 345 370136 - 370153 + F 77 -3.4 -5.01732 | gap 1, overlap 370137 TTGTGCCATCTGTTA CGG-AGC CTTGC GCTTCCG TTTTTTCAAGCACTT TERM 346 371575 - 371539 - g 75 -12.3 -3.5394 | AAATGCGCCTCGAAA TCCTCAAGCGGCGCC TGGCCGC GGCCCGGCTTGAGGA TCCGTCCCTCGAAAT dnaA 370494 - 372044 + | chromosomal replication initiation protein TERM 347 372069 - 372090 + F 100 -15.9 -5.38054 | TTTCGACGAATTCGT CGGCCGGAA ACAA TTCCGGCCG TTTTTCTTTATAAGC TERM 348 372191 - 372176 - f 74 -7.5 -4.3295 | TCGAACAAAATGAAA GCGCC GAAGCG GGCGC GTGGGAGGATTTGCA RHE_CH00359 372206 - 373288 + | putative dehydrogenase protein hemNch 374554 - 373352 - | coproporphyrinogen III oxidase RHE_CH00361 375206 - 374562 - | putative deoxyribonucleotide triphosphate pyrophosphatase RHE_CH00362 375623 - 375207 - | lactoylglutathione lyase protein rph 376348 - 375629 - | ribonuclease PH TERM 349 376595 - 376573 - g 73 -11.3 -3.5764 | gap 1, opp_overlap 376571 376587 376592 AAGGTTATCTCGAAA GCGGCGAGCC GCTC GGCTCGC-GC AATCTGTCGCGCCTT TERM 350 376696 - 376730 + G 76 -11.4 -3.73647 | gap 1 ACTCCCCGCATGTCA GCGCCGGCCGG-CTG CCGACC CAGATCGGCCTGCGC TTCTTCGTCGATGCC TERM 351 377346 - 377318 - g 75 -13.9 -3.10579 | overlap 377316 377315 TCTCGAAAAGAAGGA CAGCCTGATCGAG ATC CTCAATCTGGCTG AAACCGGTTCGGGCG hrcA 376458 - 377564 + | heat-inducible transcription repressor TERM 352 377727 - 377699 - g 75 -3 -4.84363 | gap 1, overlap 377713 TGAAACGACGAAAAA CGG-ACCTGACGC AACT GCGGCCGATGCCG CAGCAGACGCCGCCG TERM 353 377730 - 377713 - g 71 -12.7 -3.06915 | overlap 377699 ACGGACCTGACGCAA CTGCGGC CGAT GCCGCAG CAGACGCCGCCGCCA grpE 377676 - 378311 + | molecular chaperone heat shock protein (hsp-70) TERM 354 378406 - 378351 - T 86 -3.8 -5.39681 | overlap 378305 378352 378355 AGAAGGAAAGAAAAA CTCAGATGCGGGCGAAGCGTTCGATC AAAA GATCGAAGAAGCCGTCCGCATCGACG TGGCGCATCACTTTC iunH1 379296 - 378352 - | inosine-uridine preferring nucleoside hydrolase protein hsp 379578 - 380003 + | molecular chaperone small heat shock protein RHE_CH00368 380050 - 380307 + | hypothetical protein trmB 381284 - 380592 - | tRNA (guanine-N(7))-methyltransferase metK 382543 - 381290 - | S-adenosylmethionine synthetase TERM 355 382679 - 382696 + r 73 -8.3 -4.07678 | opp_overlap 382679 TAAAAACGCAAAAAA GGCGGCC TTTC GACCGCC TTTCCTATTTTACAA TERM 356 382696 - 382679 - R 100 -10.5 -5.30575 | opp_overlap 382679 TAAAAACGCAAAAAA GGCGGCC TTTC GACCGCC TTTCCTATTTTACAA RHE_CH00371 383143 - 382724 - | transcriptional regulator protein TERM 357 383080 - 383126 + g 93 -2.8 -5.58522 | CCAGCATCGTTCGGC GGAGGCGAATGCGGCTGCCAAC ATG GATGTCGATCGGATTCGGCTTC TTTTTGTTTTCTATC lnt 384896 - 383304 - | apolipoprotein N-acyltransferase TERM 358 384804 - 384792 - G 76 -6.2 -4.57073 | overlap 384799 CATCGCCGCGAAAAA GCCG AAAGG CGGC AGCGCCAGTGCGGCG RHE_CH00373 386153 - 385008 - | putative hemolysin protein TERM 359 385661 - 385692 + g 70 -10 -3.62046 | gap 1, overlap 385654 385662 385688 CTTCGATCGCCGGCG TTGCAGCGG-CCGGC TTT GCCGGGCCGCGGCGC TTGTTGCGCGCCTGC TERM 360 385662 - 385691 + g 72 -13.5 -2.77013 | gap 1, overlap 385654 385661 385688 TTCGATCGCCGGCGT TGCAGCGG-CCGGC TTT GCCGGGCCGCGGCG CTTGTTGCGCGCCTG RHE_CH00374 386665 - 386150 - | hypothetical protein phoH 387717 - 386665 - | phosphate starvation inducible protein RHE_CH00376 389145 - 387736 - | putative 2-methylthioadenine synthetase (miaB-like) protein TERM 361 387877 - 387895 + g 86 -13.1 -4.07568 | ACGTCCGATCAGCTG GCCCGGC ATGCG GCCGGGC TTTTCGAGCAGCAGA TERM 362 388860 - 388873 + g 100 -9.5 -5.31855 | overlap 388857 CGATCATCATCTCCC GGCCG TCCG CGGCC TTTTTCTTCTTCATC olsA 389929 - 389195 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein TERM 363 389753 - 389726 - G 83 -15.6 -3.14344 | opp_overlap 389725 GATCTTGGCGATGAA GGCGACGTCGGC GACC GCCGACATCACC ATGATATCCATCCAG fur 390448 - 390020 - | ferric uptake regulation protein TERM 364 390471 - 390513 + r 80 -14.1 -2.98823 | gap 1, overlap 390473 CTTCAATATTCTTTT GGCGACAGGG-CTCCGGCGC GTCT GCGCCGGCCATCCTGTCGTC TCTCTGTCAGGGAAC TERM 365 390473 - 390511 + r 75 -13.1 -3.05022 | gap 1, overlap 390471 TCAATATTCTTTTGG CGACAGGG-CTCCGGCGC GTCT GCGCCGGCCATCCTGTCG TCTCTCTGTCAGGGA TERM 366 390558 - 390539 - R 71 -9.3 -3.70853 | opp_overlap 390553 390554 390557, overlap 390554 GGAACTAGCGAAGAA CGCGCTT CATGAC AAGCGCG GTGGAGACGGCGCCG rimI 391022 - 390528 - | ribosomal-protein-alanine N-acetyltransferase protein TERM 367 390816 - 390828 + g 76 -6.2 -4.59773 | opp_overlap 390816 GCGGGCAAGGATGAA GCCG GGAAG CGGC TTTTTCAGGATCGCA RHE_CH00380 391687 - 391025 - | O-sialoglycoprotein endopeptidase protein nifUch1 392341 - 391775 - | nitrogen fixation protein RHE_CH00382 392942 - 392451 - | putative universal stress protein trpS 394116 - 393052 - | tryptophanyl-tRNA synthetase TERM 368 393270 - 393244 - G 79 -8.6 -4.28254 | opp_overlap 393262, overlap 393245 CTTGAAGACCGAAAA TTGCTGACCGCC GAA GTCGGCCAGCAC CTCGGCCTTCGATTT TERM 369 393269 - 393245 - G 70 -12.1 -3.1647 | opp_overlap 393262, overlap 393244 TTGAAGACCGAAAAT TGCTGACCGCC GAA GTCGGCCAGCA CCTCGGCCTTCGATT RHE_CH00384 394612 - 394214 - | putative glyoxalase protein TERM 370 394348 - 394314 - G 71 -6.2 -4.36914 | overlap 394318 GGCTCTTCGAGAAAA CGCACTCCGGCCGCAA GCA TGGCGGCATGATCGCG CACGAAATCATCGGT RHE_CH00385 394798 - 395226 + | hypothetical protein mviN 396975 - 395395 - | virulence factor transmembrane protein TERM 371 396740 - 396730 - G 73 -8.2 -4.07885 | GACTTCCTCCGAAAA GCGC TTG GCGC CGTCCGTACCGTTCG glnD 399820 - 396986 - | PII uridylyl-transferase TERM 372 399647 - 399692 + g 74 -5.2 -4.56597 | gap 1, opp_overlap 399634 399617 399616, overlap 399641 CAGCCCGCTGCCGTC GGCG-GCAAGGGCCGCCCGCG CCTTC TGCCGGCCTTCCGTGCTCGCC TTTTTCAAGACGGCG TERM 373 399866 - 399877 + r 71 -7.2 -4.05208 | overlap 399849 CCGGGCTGCCGGTTC GCGG CCTG CCGC TTGTTTCGTCTGCAT mutS 403040 - 400314 - | DNA mismatch repair protein TERM 374 401288 - 401246 - G 74 -12.7 -3.28712 | gap 1, overlap 401226 GCTCTTCGGCCAGAA GCGCCAG-GCCTGCGGCGAC GTCG ATCACCGCAAGCGCCCGCGC ACCCGATTTGATCGA TERM 375 401696 - 401674 - G 71 -9.1 -3.72576 | opp_overlap 401663 CCGTCGCGCAGGAAA CCGCCGTCG CGTTT CAACAGCGG CAATTCATCGGCGAG TERM 376 402252 - 402231 - G 79 -15.1 -2.87132 | CGTCTTCTCGACATA GGCGACGGC GGCC GCCGCCGCC GCGAGTTCGGCGCGC tme 403154 - 405436 + | malic enzyme RHE_CH00390 406561 - 405692 - | hypothetical protein RHE_CH00391 408954 - 406672 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 377 407122 - 407094 - G 72 -13.9 -2.70932 | opp_overlap 407091 407088 407088 CGTGTGCGGCAACCA CGGTCTCGGCC ATCGGCA GGCCGAAACCG GGCTGGTTGTCGTTC lpsA 409513 - 409010 - | lipoprotein signal peptidase protein spoU 410370 - 409510 - | rRNA methylase TERM 378 410059 - 410077 + g 79 -9.6 -4.21275 | CGGGTTGTCGCGCCG GGTGATTG CGG CGATCACC TTTTCGCTGACTTCG RHE_CH00394 411461 - 410367 - | SAM-dependent methyltransferase protein TERM 379 410617 - 410593 - G 70 -12.9 -2.87211 | ATTTCGCGGCAGACA TCGAGCATCAG CGG CAGATGCTCGA AAAGATGCCAGACTT TERM 380 411407 - 411446 + g 76 -9 -4.02911 | overlap 411392 CGTCCCTGCTGCTTT CACCGGCGGGACCTGATG TCTT CTTCTGGCCCGGCCGGCG TTCTCTTTGTTTCAA RHE_CH00395 412226 - 411588 - | MutT/NUDIX family hydrolase TERM 381 412656 - 412624 - gH 81 -12.7 -3.59738 | opp_overlap 412637 CACTATAGGGCCAAA GCCGAACTCGGCG GCAGGCT CGCCCAGCTCGGC GCACGCCTGCTCGAT RHE_CH00396 412294 - 412749 + | hypothetical protein RHE_CH00397 412718 - 413242 + | putative acetyltransferase protein RHE_CH00398 413594 - 413262 - | hypothetical protein ihfB 414024 - 413725 - | integration host factor subunit beta TERM 382 413901 - 413875 - G 72 -7.3 -4.18018 | GTTCTTGACCGAAAA CGCGCCGAA GCCGCGCAA TTCGACGCG GTTGCCCGCAGCCAG sppA 415004 - 414054 - | proteinase IV protein TERM 383 415069 - 415091 + H 74 -3.4 -4.91084 | TTGATGGCAGCGGCG CGTACGAATG CCA CTTTTGTATG TTTTTCCGTTTTGTT RHE_CH00401 415223 - 415888 + | hypothetical protein RHE_CH00402 416012 - 416536 + | hypothetical protein RHE_CH00403 416574 - 417350 + | amino acid ABC transporter ATP-binding protein TERM 384 419006 - 418974 - g 73 -11.4 -3.53811 | gap 1, opp_overlap 418983, overlap 418976 418994 CGCACGGTCGCGAAA TACCG-GGAAGCGAT GAAC ATCGCTTCCTCGGTC CAGCGCCGCCGCGAG TERM 385 419004 - 418976 - g 77 -14 -3.34715 | gap 1, opp_overlap 418983, overlap 418974 418994 CACGGTCGCGAAATA CCG-GGAAGCGAT GAAC ATCGCTTCCTCGG TCCAGCGCCGCCGCG rpoNch 417495 - 419054 + | RNA polymerase factor sigma-54 RHE_CH00405 419137 - 420048 + | putative permease protein TERM 386 420902 - 420877 - g 71 -9.1 -3.68351 | TCGGCACGACGGAAA TATTGGCTGGA TCGA TTCAGCCAATA TCAAAGGCTGAGATC RHE_CH00406 420275 - 420913 + | sigma 54 modulation protein TERM 387 420920 - 420954 + F 82 -15.6 -2.66316 | opp_overlap 420919 420908, overlap 420918 AAAGGCTGAGATCAG GGCGGTGAGCGGCGGT ATC GCCGCCGCTCCTCGCA TCATCTGATCCCGGC TERM 388 421222 - 421246 + G 70 -9.9 -3.53811 | overlap 421242 421244 CGATCGTCGGCATCT TCGCCCGGCTG GAG CAGCCTGTCGA TTTCGAAGCGCTGGA ptsNch 420987 - 421451 + | protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of thephosphotransferase system) TERM 389 421515 - 421462 - T 75 -13.5 -2.58544 | gap 2, opp_overlap 421477, overlap 421477 CTTGAGCTGCATAAT CCCTA-A-ATGAAAAAAGGCGCCTG ATTTCG CAGGCGCCTTTTTTCTTATGCAGGG CTGAACGGTCAGAAC TERM 390 421498 - 421477 - T 100 -13 -5.37593 | opp_overlap 421477, overlap 421462 CCCTAAATGAAAAAA GGCGCCTG ATTTCG CAGGCGCC TTTTTTCTTATGCAG TERM 391 421477 - 421498 + T 100 -13 -5.55769 | opp_overlap 421477 421462 CCCTAAATGAAAAAA GGCGCCTG ATTTCG CAGGCGCC TTTTTTCTTATGCAG mcpX1 423878 - 421524 - | methyl-accepting chemotaxis protein TERM 392 421720 - 421775 + g 73 -13.3 -3.14931 | gap 2, overlap 421695 421765 ACGCTGAAGCGTGTG GCGAGCGCCTTCAGCGTCTGCGCCTCG TCGT TGAG-CGCC-ACGCTGGCGGCGGTCGC TTCCTCCACCATCGC TERM 393 422095 - 422071 - G 89 -12.7 -4.15565 | GCGACGACGGCAAAA CCCTTGCCGGC CTC GCCGGCGCGGG CCGCTTCGACGCCGG TERM 394 424013 - 423986 - R 75 -12.8 -3.0806 | gap 1, opp_overlap 423981 TCCAAAGCGCGAAGA CCCGGCGATCACT GGG AG-GATCGCCGGA GACCCCTTAAATTTG rbsK 425056 - 424118 - | ribose kinase protein TERM 395 424918 - 424865 - G 77 -14.4 -2.93382 | gap 1, opp_overlap 424871 424912 GGCCATATGCACATA GCGGCCGGCGCGACGGGCTGCCAGC GCCTG GTTGGC-GCCCTTGCCGCCGGCGGC CGTGGCAAAACCGTT RHE_CH00410 426131 - 425097 - | hypothetical protein TERM 396 425942 - 425958 + g 74 -12.3 -3.42699 | overlap 425950 TGACCGCCAGTCGCT CCTGCAG CCG CTGCAGG TTCTCATGCGTCGAT TERM 397 426654 - 426686 + G 95 -3.1 -5.67063 | opp_overlap 426660 CTCGATAAGTTTTAT GCCAAAGTCGCCAGG ACC CCCGCCGTCTCAGGC TTTTTTTCTGATAAG TERM 398 427576 - 427600 + G 72 -7.7 -4.17023 | overlap 427592 CCGGCGTCGAGGCAG CACGTGCCGGC GAT GCTGGCAAGGG TTTTGCCGTCGTTGC mcpV1 426441 - 428012 + | methyl-accepting chemotaxis protein TERM 399 428063 - 428051 - f 81 -4.7 -5.08824 | overlap 428030 CGGGGATGCAAAAAA GCGTC TTC GCCGC CCGCCGGATAATTCC def 428111 - 428626 + | peptide deformylase TERM 400 429306 - 429254 - g 93 -19.4 -3.2794 | opp_overlap 429304, overlap 429287 GCCGATGGAGACCAA GGATG-CCATGATTGCCGCCATCTGC CTT GCAAATGGCGGCACTC-TGGCCACCC GGAACACCCGAGATT stdB 428949 - 429368 + | plasmid stability protein TERM 401 430276 - 430249 - g 72 -12 -3.28924 | gap 1, opp_overlap 430238 430237 GACGCGGCTGCAGAA GGCAGGCGGCAAG CCG CTTGCCGCG-GCC GATTTCCTCAGGGGC fmt 429389 - 430324 + | methionyl-tRNA formyltransferase TERM 402 430752 - 430787 + G 86 -14 -3.89614 | gap 1, overlap 430753 430755 CGACGACGAGGTCAT GCATGCC-GCCGCCCAG CGG CTGGTCGGCCGGCATGA TTTCTCCACCTTCCG TERM 403 430753 - 430786 + G 87 -17.5 -2.93447 | gap 1, overlap 430752 430755 GACGACGAGGTCATG CATGCC-GCCGCCCAG CGG CTGGTCGGCCGGCATG ATTTCTCCACCTTCC TERM 404 430755 - 430784 + G 78 -14.3 -3.0169 | gap 1, overlap 430753 430752 CGACGAGGTCATGCA TGCC-GCCGCCCAG CGG CTGGTCGGCCGGCA TGATTTCTCCACCTT truA 430324 - 431127 + | tRNA pseudouridine synthase A RHE_CH00416 431751 - 431155 - | hypothetical protein dapE2 432967 - 431738 - | succinyl-diaminopimelate desuccinylase dapD 433892 - 433032 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 405 434277 - 434257 - g 77 -12.5 -3.61398 | opp_overlap 434266 CTCTGCCGTGAAGAA CTGCGGCCG ATC CGGCTGCAG CTGGAATTGCTGAAG RHE_CH00419 433921 - 434946 + | hypothetical protein TERM 406 434960 - 435018 + T 80 -14.2 -3.01712 | gap 3, opp_overlap 434950, overlap 434968 434970 AAGAACAAGCCATGC CTTGGTGAAC--TTG-GCTCTTTCCCCGC CGGA GCGGGGAAAGAGCGCAATGGTTCGTCCAG TCTTACAGGAACGGC TERM 407 434968 - 435009 + T 75 -13.2 -3.18735 | gap 2, overlap 434960 434970 GCCATGCCTTGGTGA AC-TTG-GCTCTTTCCCCGC CGGA GCGGGGAAAGAGCGCAATGG TTCGTCCAGTCTTAC TERM 408 434970 - 435006 + T 100 -20.4 -2.78725 | gap 1, overlap 434968 434960 CATGCCTTGGTGAAC TTG-GCTCTTTCCCCGC CGGA GCGGGGAAAGAGCGCAA TGGTTCGTCCAGTCT RHE_CH00420 435635 - 435021 - | hypothetical protein TERM 409 435217 - 435245 + g 70 -12.3 -3.1247 | overlap 435229 ATCCAGCGACGACCG TCATGGCGGTCGC GCG GCGGCCGCCCGGA TTCGCTGTCCGGCAT RHE_CH00421 436459 - 435743 - | putative hydrolase protein bchE 436645 - 438174 + | Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit protein TERM 410 438370 - 438383 + G 72 -3.7 -4.63218 | AGCGCGCAAGCCGAA GCGGG AAAA CACGC TTTTCTTCGAGACGA ada 438230 - 439303 + | methylated-DNA-[protein]-cysteine S-methyltransferase protein TERM 411 439837 - 439857 + G 86 -13.9 -3.83844 | CGGGGCGGGGCCTAT GCCGCGGCC GGC GGCAGCGGC TTCTTCGTTCCTGGC RHE_CH00424 439300 - 440070 + | putative carboxyphosphonoenolpyruvate phosphonomutase protein lldD1 441282 - 440134 - | L-lactate dehydrogenase (cytochrome) protein TERM 412 441587 - 441629 + r 71 -11 -3.10522 | overlap 441611 ACCGCCACTGCACCC GCCCCGCCCTTCGAGGCCCC TCC GGGGCACCTCAGGGTGAGGC TCTCTTGAATGCCGT RHE_CH00426 442603 - 441665 - | fatty acid desaturase protein TERM 413 442002 - 441978 - G 75 -12.2 -3.55444 | overlap 441981 TTGCGATGGGCGAAA TGACCGACCA GCCAG TGGCCGGTCA GCGATACCGAGATCC TERM 414 442003 - 441981 - G 74 -13.4 -2.91144 | overlap 441978 CGATGGGCGAAATGA CCGACCAGCC AGT GGCCGGTCAG CGATACCGAGATCCT TERM 415 442725 - 442702 - H 71 -6.9 -4.32402 | CGCCAATGAAAATAA TTAAGCAAT ACGTTA ATTGCTTAA GCGCAGCGATGCTTT RHE_CH00427 442742 - 443131 + | ArsR family transcriptional regulator argB 444316 - 443228 - | acetylglutamate kinase sigK 444378 - 444800 + | RNA polymerase sigma factor RHE_CH00430 444797 - 445516 + | hypothetical protein RHE_CH00431 445590 - 446180 + | putative transforming growth factor-induced protein (and secreted protein MPB70) RHE_CH00432 447356 - 446286 - | two-component sensor histidine kinase protein RHE_CH00433 448020 - 447592 - | hypothetical protein RHE_CH00434 448293 - 448069 - | hypothetical protein TERM 416 448359 - 448339 - R 100 -14.7 -5.48213 | opp_overlap 448339 GAGCGAAAACAAAAA GGCCAGGCA GAT TGCCCGGCC TTGAGTAAATCGGTG TERM 417 448339 - 448359 + r 75 -12.5 -3.08133 | opp_overlap 448339 GAGCGAAAACAAAAA GGCCAGGCA GAT TGCCCGGCC TTGAGTAAATCGGTG RHE_CH00435 448648 - 448424 - | cold shock protein engB 449531 - 448878 - | GTPase EngB TERM 418 449502 - 449514 + g 71 -6.2 -4.35524 | overlap 449503 GAAGATCCAGGGGTG GCCG AAGAG CGGC TTTTCGGTTTCAGGC TERM 419 449662 - 449645 - R 100 -14.1 -4.55798 | opp_overlap 449645 GACCGGAAATGAAAA GCCCCGC CGGA GCGGGGC TTGTGGGCATCATTT TERM 420 449645 - 449662 + r 83 -14.1 -3.32536 | opp_overlap 449645 GACCGGAAATGAAAA GCCCCGC CGGA GCGGGGC TTGTGGGCATCATTT RHE_CH00437 451465 - 449672 - | putative inner membrane protein translocase component YidC TERM 421 450664 - 450697 + g 83 -12.3 -4.06419 | gap 1, overlap 450682 450683 TGTCGGTAATGCCGA GCC-AGCCGCCGGCGG ATT TCGCCGGCGACACGGC TTCTTTCTCGACGGC rnpA 451866 - 451465 - | ribonuclease P TERM 422 451797 - 451833 + g 91 -11.6 -4.33819 | gap 1, opp_overlap 451801, overlap 451764 451799 451801 451824 CCTCGCGCACGGCAA GAAACTG-CGGGCGGCT TCTC AGCCGCCCGACAGTGTG TTTCTTCTCACTGGT TERM 423 451799 - 451831 + g 88 -14.2 -3.76888 | gap 1, opp_overlap 451801, overlap 451764 451797 451801 451824 TCGCGCACGGCAAGA AACTG-CGGGCGGCT TCTC AGCCGCCCGACAGTG TGTTTCTTCTCACTG TERM 424 451829 - 451801 - G 100 -16.8 -4.1822 | gap 1, opp_overlap 451764 451799 451797 451801 451824 GCGCACGGCAAGAAA CTG-CGGGCGGCT TCTC AGCCGCCCGACAG TGTGTTTCTTCTCAC TERM 425 451801 - 451829 + g 89 -16.8 -3.45784 | gap 1, opp_overlap 451801, overlap 451764 451799 451797 451824 GCGCACGGCAAGAAA CTG-CGGGCGGCT TCTC AGCCGCCCGACAG TGTGTTTCTTCTCAC rpmH 452022 - 451888 - | 50S ribosomal protein L34 TERM 426 453765 - 453749 - g 71 -5 -4.45664 | overlap 453750 GGAAGCCAAGGAAAA TGCCGG CCGCT CCGGCG TCGTCGTGCGCAATG TERM 427 453901 - 453925 + G 79 -9.1 -4.15565 | CCGGTGTCGAAGCGG CCCGCGCCGGT GAG GCCGGCAAGGG TTTTGCCGTGGTCGC mcpT 452442 - 454445 + | methyl-accepting chemotaxis protein TERM 428 454467 - 454492 + F 100 -15.5 -4.57073 | overlap 454468 454476 454479 CTGATCAGGTGCCTT TTAACGCCGCC TCCG GGCGGCGTTAG TTTTTCCGCCCGGTC TERM 429 454468 - 454491 + F 90 -16.8 -3.33922 | overlap 454467 454476 454479 TGATCAGGTGCCTTT TAACGCCGCC TCCG GGCGGCGTTA GTTTTTCCGCCCGGT TERM 430 455820 - 455858 + G 84 -15.2 -3.29144 | opp_overlap 455804, overlap 455816 TCTGCCGCAACGCGC TGCAGGCGCTGACTTCGC CGG GCGAGGGCAGCCCCGGCA TTATCAGGCGCATCA TERM 431 456024 - 456059 + G 84 -15.4 -3.28712 | gap 1 GCCTCACCATTGCCC GCGAGCTGGTGCTCGCC CAT GGCG-GCACCATCGCGC TTGTGGAAAAACCGA TERM 432 456081 - 456071 - g 78 -6.8 -4.56597 | GCGCTTGTGGAAAAA CCGA CGG TCGG CACCCAGTTCCGCAT regM 454643 - 456160 + | two-component sensor histidine kinase protein RHE_CH00443 457310 - 456432 - | hypothetical protein TERM 433 457254 - 457230 - G 76 -10.7 -3.72324 | GACGGTCAGTAAGAA CGTCGCGATCC CAA AGATCGAGACG CCAAAATTCCCTACG TERM 434 457534 - 457558 + r 76 -7.1 -4.68209 | AACTATTGAGCGGTC GGGAAGTCTCT TTC AAAGTCTTCCC TTTCTTTCTTCCCGT RHE_CH00444 457943 - 457521 - | hypothetical protein TERM 435 458780 - 458732 - g 100 -11.2 -5.7946 | gap 1, overlap 458733 GCCGGAAGAAAAAAA CGCCACTTCGGGATCCCGAAA TCCCGCCG CTTCGGGATCCCGAAATT-CG CCGCGCCTCGTGAGC TERM 436 458781 - 458733 - g 82 -11.2 -4.06592 | gap 1, overlap 458732 CCGGAAGAAAAAAAC GC-CACTTCGGGATCCCGAAA TCCCGCCG CTTCGGGATCCCGAAATTCGC CGCGCCTCGTGAGCG RHE_CH00445 458206 - 458793 + | hypothetical protein RHE_CH00446 459016 - 459336 + | hypothetical protein TERM 437 459702 - 459674 - f 86 -14.6 -3.55761 | opp_overlap 459678 TATTGAGCCGGCAAA GGAAGAGGCGGC GACGA GCCGCCTCTTTC CCGACCAGGGCGCCG TERM 438 459678 - 459698 + F 85 -14 -3.53012 | opp_overlap 459674 GAGCCGGCAAAGGAA GAGGCGGC GACGA GCCGCCTC TTTCCCGACCAGGGC RHE_CH00447 459819 - 460112 + | hypothetical protein TERM 439 460132 - 460153 + F 86 -15.1 -3.2614 | GCGCGATCGGGCTAA GGGGCGGCT TCCA GGCCGCCCC TTCATCTGGACGGTG TERM 440 460755 - 460787 + G 75 -13.6 -3.08934 | opp_overlap 460713 CGCTTCTGTCGATGT CGCCGCGCAA-GATCG CCT CGATCCTTGC-CGGCG TCTTCACCTATATGC pmtA 460376 - 461044 + | phospholipid N-methyltransferase protein TERM 441 462021 - 461993 - g 74 -5.4 -4.60487 | gap 2 CACGATCGCCAAAAA GCACAATGCTGCGC CGA GC-CAG-ATTGCGC TCGCCTGGGTGCTGA RHE_CH00449 461301 - 462182 + | oxidoreductase protein TERM 442 462258 - 462218 - f 70 -9.5 -3.4811 | opp_overlap 462241, overlap 462216 GTTCCCATAACAAGA CCCCTCCCCAATCCCTCCC TGT GGGAGGGGCTGGGATGCCG CACCGTTTCACACAA TERM 443 462682 - 462651 - f 86 -15.2 -3.22298 | opp_overlap 462651 GTCAGTCAGGATCAA GAGCCTGGCGCA CCTCCTCC CGCGCCAGGCTC TTTTCTTTTCCCGGC TERM 444 462651 - 462682 + F 100 -14.5 -5.07652 | opp_overlap 462651 GTCAGTCAGGATCAA GAGCCTGGCGC ACCTCCTCCC GCGCCAGGCTC TTTTCTTTTCCCGGC RHE_CH00450 462794 - 464071 + | hypothetical protein TERM 445 464117 - 464090 - f 76 -13.6 -2.77182 | overlap 464087 TTTCATAGGCAATCA TCGTTGATCTGA TATA TCAGACCAACGA AGCGGCGATGCTGTT RHE_CH00451 464155 - 465405 + | D-amino acid dehydrogenase protein RHE_CH00452 465458 - 466495 + | proline racemase protein RHE_CH00453 466779 - 466531 - | hypothetical protein RHE_CH00454 467265 - 466903 - | hypothetical protein RHE_CH00455 467843 - 467262 - | TetR family transcriptional regulator RHE_CH00456 469603 - 468071 - | two-component response regulator protein TERM 446 468757 - 468741 - G 77 -2.2 -5.00616 | overlap 468743 GCCTCGCGGAAAAAA CGCCTT GCCAG AAGGTG GGTCGGCTTCGAGAC TERM 447 469618 - 469631 + H 87 -9.5 -4.61527 | opp_overlap 469618, overlap 469607 TGGCCGGCCATGATA CGCCG ATTT CGGCG TTTTTCGGAACTTTT RHE_CH00457 469720 - 470154 + | hypothetical protein TERM 448 470367 - 470381 + G 83 -12.8 -3.82946 | TACCTGGGTTCGGGT GCGCGG CTC CCGCGC TTATATTTCAGGTCA RHE_CH00458 470266 - 470748 + | hypothetical protein RHE_CH00459 472416 - 470875 - | putative sensory box/GGDEF family protein TERM 449 472899 - 472887 - g 95 -10.5 -4.58859 | AAATATAAGAAGAAA GGCGC TCT GCGCC TCGCCAGCCTGCCGG TERM 450 473670 - 473654 - g 72 -4.3 -4.58663 | opp_overlap 473660, overlap 473655 AGGAGTTCGCAAAAA GGCCAAG CGT CTCGGCG TCGCATATTCATTCC RHE_CH00460 472851 - 473858 + | zinc-binding oxidoreductase protein RHE_CH00461 474468 - 473887 - | TetR family transcriptional regulator TERM 451 474591 - 474645 + r 81 -13 -3.64703 | gap 1, opp_overlap 474597, overlap 474592 TTGTGACGGTGACGC ATTACATGCAGATGGCACCGCGTGT TTTTTT ACGGGCGGTGCCATCTGCA-GCAAC TTTGAATGCGGGAAA TERM 452 474592 - 474644 + r 86 -16.5 -2.78679 | gap 1, opp_overlap 474597, overlap 474591 TGTGACGGTGACGCA TTACATGCAGATGGCACCGCGTGT TTTTTT ACGGGCGGTGCCATCTGCA-GCAA CTTTGAATGCGGGAA TERM 453 474640 - 474597 - R 95 -19.7 -2.80816 | opp_overlap 474592 474591 CGGTGACGCATTACA TGCAGATGGCACCGCGTGT TTTTTT ACGGGCGGTGCCATCTGCA GCAACTTTGAATGCG RHE_CH00462 476012 - 474735 - | hypothetical protein TERM 454 474960 - 474972 + g 85 -5.5 -5.08601 | CAAAGCCAGATCAGC GGGAG CGT CTTCC TTTTTCTTGCCCTCC TERM 455 475139 - 475154 + g 73 -8.2 -3.9777 | GCAAGGTCTGGAGCT GCTGCG TGCG CGCGGC TTTCTGCATCTTGGG fucUch1 476846 - 476373 - | fucose dissimilation pathway protein frcR 478077 - 476830 - | sugar transcriptional regulator protein ROK family TERM 456 476941 - 476896 - G 100 -21.1 -4.19953 | gap 1, opp_overlap 476906 476913 GAGGTAACGCGAAAA GATCGGCAGGCTGGCGC-CGCC GAT GGCGCGCGCCTGCGCGCCGACC GCGCCCTCGATGATT TERM 457 477063 - 477043 - G 77 -12.5 -3.61268 | CACCCAATCGGGAAA GCCGCCGTC GAT GACCGCGGC GCTGAAATCGACGAT TERM 458 477247 - 477228 - G 70 -7.2 -4.08216 | gap 1, overlap 477232 477234 GCATGTTTTCCAAAA CGAAGATCG AGG CGATCT-CG AGCAGCTGCTTAGTT TERM 459 478385 - 478360 - H 86 -11.1 -4.13014 | gap 1 GTCACATCTCGAAAA TTCCGGC-CCGC AAG GCGGCGCCGGCA AACTCTGGGAGGAGT TERM 460 478894 - 478839 - g 79 -11.1 -3.90291 | gap 2, overlap 478840 478861 AGTGGGCCAAGGAAA CGCTCGGCGACAAGGCCAAGGACGCCA AGGT CGGCTTCCTCGACC-TGACGCCGT-CG CAGCCGACGGTTGAC frcB 478403 - 479422 + | fructose ABC transporter, substrate-binding protein TERM 461 479470 - 479445 - f 74 -7.4 -4.35044 | opp_overlap 479446, overlap 479446 CTATTGAAAGAGAAA GCGGCCGGGG CTTGAT CCCTGGCCGT TTTGGACGGACGATG TERM 462 479446 - 479469 + F 91 -13.1 -4.07687 | opp_overlap 479446 479445 TATTGAAAGAGAAAG CGGCCGGGG CTTGAT CCCTGGCCG TTTTGGACGGACGAT frcC 479575 - 480639 + | fructose ABC transporter, permease protein frcA 480642 - 481424 + | fructose ABC transporter, ATP-binding protein TERM 463 481435 - 481482 + G 81 -10.4 -4.2461 | gap 1, opp_overlap 481443 CATGAGTGCACGCAT CGAC-GAAATCGCCGGCGAGGTT CTT GGCCGCGCCGGCGATGCCAGACG TTTCTTGATCGGCAT TERM 464 481473 - 481443 - g 90 -15.4 -3.767 | opp_overlap 481435 CACGCATCGACGAAA TCGCCGGCGAGG TTCTTGG CCGCGCCGGCGA TGCCAGACGTTTCTT TERM 465 481851 - 481866 + G 73 -3.2 -4.68994 | opp_overlap 481842, overlap 481844 GCAAATGGGCCGAGC TCGACG GCAT CTTCGA TTTTTCGATCATGCT frcK 481421 - 482053 + | putative fructose transport system kinase TERM 466 482475 - 482451 - g 93 -13.5 -4.20783 | ATCTGACCGAACAAA CCAGCCCCGAC GAT GTCGAGGCGGG GGCGGCAAGCGGGCT TERM 467 483127 - 483164 + G 76 -5.5 -4.59773 | opp_overlap 483127, overlap 483128 483131 CCTGTCGCCGAACGA GGAGCGGATCACCTTGT CAAA GCAGGCTGATCCGGTCG TTTTTCCCGCTAAGA pyrC 482210 - 483256 + | dihydroorotase RHE_CH00470 483430 - 484608 + | hypothetical protein RHE_CH00471 484745 - 484963 + | hypothetical protein RHE_CH00472 485608 - 485126 - | hypothetical protein TERM 468 485673 - 485631 - H 75 -9.4 -4.07568 | opp_overlap 485631 485634, overlap 485634 485640 CTCCTTCCGGGAAAA TAAGAGAAACTCTCTCATTT GCG AAATGAGATAAACTCTCTTA TTTTGATTGTCAACC TERM 469 485631 - 485673 + H 70 -5 -4.48987 | opp_overlap 485631 485634 485640, overlap 485634 CTCCTTCCGGGAAAA TAAGAGAAACTCTCTCATTT GCG AAATGAGATAAACTCTCTTA TTTTGATTGTCAACC TERM 470 485664 - 485640 - H 70 -5.1 -4.45253 | opp_overlap 485634 485631, overlap 485634 485631 GGAAAATAAGAGAAA CTCTCTCATTT GCG AAATGAGATAA ACTCTCTTATTTTGA TERM 471 486017 - 485999 - g 86 -11.6 -4.19238 | GGTGGAATTGGAAAA GGTCGCGG ACG CCGCGGCC TTGCAAGGTGCGCTC RHE_CH00473 485703 - 486356 + | TetR family transcriptional regulator TERM 472 486674 - 486696 + G 70 -11.9 -3.17075 | GCAGTTCGACTGCAT CGCCGGCGG CGAGA CCGCCGGCA TTCCCTTCGCCGCCC pyrE 486432 - 487121 + | orotate phosphoribosyltransferase TERM 473 487259 - 487249 - g 73 -8.2 -4.07885 | GACCCTGGGCGAAAA GGGC TTT GCCC CCTATGCCGGCGGTG TERM 474 487895 - 487933 + G 84 -16.6 -3.05596 | opp_overlap 487876 487871 ACGGTGCCGAGCGAG CGCGTCGCGGTCGTCGAC ACG GTCGGCGCCGGCGACACG TTCGATGCCGGCGTG frk 487184 - 488110 + | fructokinase protein otsAch 489901 - 488495 - | trehalose-6-phosphate synthase protein TERM 475 490339 - 490319 - R 70 -10.3 -3.32844 | opp_overlap 490312 TGCCTCACGCGATAA GGGGCAGTG GTG CGCCGCCCC TCGATCAGCTATTTC pgi 491973 - 490348 - | glucose-6-phosphate isomerase TERM 476 492087 - 492065 - R 100 -12.7 -5.27779 | opp_overlap 492065 492063 TCCAATATGAAAAAA GCCACCCGC GGCAA GCGGATGGC TCTTAGATGTGAGCT fadD 493821 - 492121 - | acyl-CoA synthetase TERM 477 493763 - 493784 + g 73 -2.9 -4.77157 | overlap 493764 493765 493767 ACCATATCCGGATAG GTGGCAAGC CACG GCTTGTCGG TTTTTGCTCCGTTCG RHE_CH00479 494083 - 494475 + | hypothetical protein TERM 478 494502 - 494522 + T 100 -12.5 -4.87037 | opp_overlap 494501 494502 GGACCGAGCAGGAAG GGCCCCGTG CGA TGCGGGGCC TTTTTGGTGTGTATT manB1 497017 - 494564 - | beta-mannosidase protein lguL 497476 - 497102 - | lactoylglutathione lyase protein RHE_CH00482 498291 - 497542 - | proline/glycine betaine ABC transporter, permease protein TERM 479 497835 - 497890 + g 73 -8.9 -4.09685 | overlap 497837 TCGCATTCATGCCCA TGCCGTCGGCGGCGTCGAGCACCTG CGGCGA CACCTGCTTCAAGCCGGCGACGGTA TTTTCGAAGATCGGC RHE_CH00483 499232 - 498288 - | proline/glycine betaine ABC transporter, ATP-binding protein RHE_CH00484 500395 - 499229 - | proline/glycine betaine ABC transporter, permease protein TERM 480 499421 - 499392 - G 81 -12.9 -3.72576 | gap 1 CCGCCGCCGATCAAA GC-GGCGATCGTCA CCA TGCCGATCGCCTGC ACCAGCACGATGCGG TERM 481 499618 - 499594 - G 73 -12.8 -3.11316 | GCAGCAGCGAATAGA GCACCAGCGC GATCA GCGCCGGCGC CGTGCCGATGCCGCG TERM 482 500444 - 500419 - R 85 -16.1 -3.08813 | opp_overlap 500420 500423 CCTTATGGGAAGAGA TGCTCCGCCCG CTGC CGGGCGGAGCG GGCGATGATTACTTC RHE_CH00485 501361 - 500453 - | glycine betaine ABC transporter, substrate binding protein RHE_CH00486 501693 - 501355 - | hypothetical protein TERM 483 501694 - 501724 + H 78 -4.7 -5.00616 | gap 1, opp_overlap 501698 TTTTGTGACGACCAC GATAGCCC-GGCTC TATC GAGGCAGGGATATC TTTTTTCGCGAACAC RHE_CH00487 501914 - 503011 + | LysR family transcriptional regulator cutC 503008 - 503733 + | copper homeostasis protein TERM 484 503792 - 503817 + T 78 -11.9 -3.53563 | opp_overlap 503766, overlap 503793 GCGACCTCTCGACTC CCTCTTCTCCC CGAG GGGAGAAGAGA TTTGCGGCAGCCTCT TERM 485 503793 - 503816 + T 80 -15.4 -2.71924 | opp_overlap 503766, overlap 503792 CGACCTCTCGACTCC CTCTTCTCCC CGAG GGGAGAAGAG ATTTGCGGCAGCCTC RHE_CH00489 504934 - 503915 - | zinc-type alcohol dehydrogenase protein TERM 486 504275 - 504291 + g 76 -5.8 -4.5442 | gap 1 GCCATTGGTTTTTTC CCGCACG GCAT CG-GCGG TTTTCTCGTTGGCGA TERM 487 504492 - 504445 - G 74 -11.8 -3.40403 | gap 1, overlap 504446 CGGCGCCGATGACAA GCGCGCGCGCGCCGGCGCCGGTC AGT GAGCGGCGC-ACCGCATGGGCGC CGATCGCCAGAAATT TERM 488 504987 - 504963 - R 81 -13.6 -3.27525 | opp_overlap 504961 504957 504966, overlap 504966 TTCCTGGAAATTGAA GAAGCCGGCC TGTGC GACCGGCTTC TCTGAGTTTCTCAAT TERM 489 504984 - 504966 - R 75 -9.5 -3.77832 | opp_overlap 504961 504957 504966, overlap 504963 CTGGAAATTGAAGAA GCCGGCC TGTGC GACCGGC TTCTCTGAGTTTCTC RHE_CH00490 505972 - 504998 - | sugar ABC transporter, permease protein RHE_CH00491 507553 - 506000 - | sugar ABC transporter, ATP-binding protein TERM 490 507569 - 507626 + r 71 -4.8 -4.56597 | gap 1, opp_overlap 507616, overlap 507570 507571 507613 507615 507616 GGACCTCTCCTCCTC TTGTCGC-GTCTGCTCCATCCCTGCTG AACCA TAGCATGGATGGAAAAGGCCGCGCCGG TTTTTGAGCCGGCGC TERM 491 507613 - 507648 + r 95 -16.8 -3.62476 | opp_overlap 507616, overlap 507571 507570 507569 507615 507616 CATAGCATGGATGGA AAAGGCCGCGCCGGTT TTTG AGCCGGCGCGGCCGTC TTGTCTGCTTACTTG TERM 492 507615 - 507646 + r 100 -19.4 -3.38002 | opp_overlap 507616, overlap 507571 507570 507569 507613 507616 TAGCATGGATGGAAA AGGCCGCGCCGGTT TTTG AGCCGGCGCGGCCG TCTTGTCTGCTTACT TERM 493 507645 - 507616 - R 100 -20.7 -4.20084 | opp_overlap 507571 507570 507569 507615 507613 507616 AGCATGGATGGAAAA GGCCGCGCCGGTT TTTG AGCCGGCGCGGCC GTCTTGTCTGCTTAC TERM 494 507616 - 507645 + r 100 -22.9 -2.62078 | opp_overlap 507616, overlap 507571 507570 507569 507615 507613 AGCATGGATGGAAAA GGCCGCGCCGGTT TTTG AGCCGGCGCGGCC GTCTTGTCTGCTTAC RHE_CH00492 508646 - 507657 - | sugar ABC transporter, substrate-binding protein TERM 495 508269 - 508310 + g 70 -12.3 -3.1876 | gap 1, opp_overlap 508248 GAACGCCTTGGAGTC GGCGCCAGAGTCGATGCCGA TGA TCGGAACCGACT-TGGCGGC TTCATCGATCGGCTT TERM 496 508773 - 508785 + r 75 -2.6 -5.14563 | overlap 508767 AATCAAATTGCAAGG GCGT CTGTT GCGC TTTTTTACTCCGGAA fucUch2 509302 - 508853 - | fucose dissimilation pathway protein RHE_CH00494 510331 - 509312 - | L-fucose dehydrogenase protein RHE_CH00495 511880 - 510378 - | altronate hydrolase protein TERM 497 511042 - 510998 - G 74 -14.2 -2.62263 | gap 1, overlap 511027 AGGTCTCCGACAGGA TCGCCGT-GCCGCCGGCCGCC GCCA GGAGATCGGCGGCGACGCCGA GCGCCGGATTGGCAG RHE_CH00496 512117 - 513016 + | transcriptional regulator protein TERM 498 513833 - 513850 + G 73 -8.3 -4.06491 | opp_overlap 513815 CCGGTCGACTTCATC GCCGGCG TCAT CGCCGCC TTTCTGTCGGCTTCG TERM 499 514913 - 514885 - g 73 -8.1 -4.07568 | gap 1, opp_overlap 514871 514887 GTCGGGTGGCGAAAA GCAGCGGCTCGC CTTTGC GCG-GCTGCTGC TGCACACCCCCGATA RHE_CH00497 513233 - 515182 + | ABC transporter ATP-binding protein RHE_CH00498 516669 - 515179 - | putative multidrug transport protein TERM 500 516830 - 516862 + r 88 -16.4 -3.05384 | gap 1, opp_overlap 516830, overlap 516834 CAACGTCAGCCGAAA TGAAGGCCCGGCGCG ATCA CG-GCCGGGTCTTCA TTCCATCGAACGCGG TERM 501 516862 - 516830 - R 86 -14.2 -3.61103 | gap 1, opp_overlap 516830 516834 CAACGTCAGCCGAAA TGAAGGCCCGGCGCG ATCA CG-GCCGGGTCTTCA TTCCATCGAACGCGG TERM 502 516834 - 516858 + r 74 -11.4 -3.37344 | gap 1, opp_overlap 516830, overlap 516830 GTCAGCCGAAATGAA GGCCCGGCGCG ATCA CG-GCCGGGTC TTCATTCCATCGAAC RHE_CH00499 517400 - 516891 - | hypothetical protein RHE_CH00500 517479 - 518615 + | acyltransferase protein TERM 503 519389 - 519375 - T 70 -5.6 -4.38712 | CTGATGCGGATAAAA GCAAGC TTA GCTGGC AAAGAAAGCAACGTT RHE_CH00502 520191 - 519412 - | hypothetical protein TERM 504 519583 - 519555 - G 71 -13.1 -2.98545 | opp_overlap 519555, overlap 519552 CTCCGACAACAATGA GGCGCTTTCCTAG CAT CTCGGAGAGCGCC TTCCCTTCCAGAACT TERM 505 519555 - 519583 + g 83 -15.3 -3.17194 | opp_overlap 519555 519552 CTCCGACAACAATGA GGCGCTTTCCTAG CAT CTCGGAGAGCGCC TTCCCTTCCAGAACT RHE_CH00503 521008 - 520193 - | hypothetical protein RHE_CH00505 522548 - 521589 - | dioxygenase protein TERM 506 522621 - 522605 - H 76 -3.6 -4.90002 | overlap 522607 522615 522617 TAACAGAGAAGAAAA GCCGAT AAAAG AGCGGC TGCCACGCCTTCGTC RHE_CH00506 522797 - 524050 + | putative regulator protein RHE_CH00507 524993 - 524112 - | hypothetical protein TERM 507 526363 - 526343 - g 78 -3.2 -5.00884 | gap 1 AGCCGCTCGAAAAAA GGCACCGGC CTCG GCCT-TGCC ATCGTCAAACATATC phoR 525344 - 526453 + | phosphate regulon, two-component sensor histidine kinase protein pstS 526817 - 527851 + | phosphate ABC transporter, substrate-binding protein TERM 508 527854 - 527894 + F 75 -11 -3.524 | gap 1, opp_overlap 527852 527855, overlap 527855 527858 TAAGTCCATGTAATG ACTTTGCCGGCGCGGTGCT TCAA GGC-CCGCGCCGGCATCGC TTATGTCCCTGCGTC TERM 509 527855 - 527893 + F 78 -14.5 -2.71119 | gap 1, opp_overlap 527852 527855, overlap 527854 527858 AAGTCCATGTAATGA CTTTGCCGGCGCGGTGCT TCAA GGC-CCGCGCCGGCATCG CTTATGTCCCTGCGT TERM 510 527893 - 527855 - f 79 -14.4 -2.7556 | opp_overlap 527855 527854 527858, overlap 527852 AAGTCCATGTAATGA CTTTGCCGGCGCGGTGCT TCA AGGCCCGCGCCGGCATCG CTTATGTCCCTGCGT TERM 511 527858 - 527890 + F 91 -19.2 -2.63555 | gap 1, opp_overlap 527855 527852, overlap 527855 527854 TCCATGTAATGACTT TGCCGGCGCGGTGCT TCAA GGC-CCGCGCCGGCA TCGCTTATGTCCCTG pstC 528018 - 529499 + | phosphate ABC transporter, permease protein pstA 529496 - 530818 + | phosphate ABC transporter, permease protein pstB 530833 - 531648 + | phosphate ABC transporter, ATP-binding protein TERM 512 532066 - 532114 + G 71 -12.5 -2.98823 | AGCTCGCCCGCGGTC TCGAGCACTTGTCCGAGCTGG CGCTCGT CCAGCTCAAGGAAGTGCTCGA TGTCTATACGACACG phoU 531693 - 532406 + | phosphate uptake transcriptional regulator protein phoB 532567 - 533250 + | phosphate regulon, two-component response regulator protein TERM 513 533690 - 533705 + T 83 -11.8 -3.71649 | opp_overlap 533690 CATTCCATAAAAAAA CGGGCC ACGA GGCCCG TTTCGCATTTCCAGC TERM 514 533705 - 533690 - T 100 -11.8 -5.626 | opp_overlap 533690 CATTCCATAAAAAAA CGGGCC ACGA GGCCCG TTTCGCATTTCCAGC TERM 515 533747 - 533764 + T 72 -10.5 -3.40371 | CGCTCAGCTGACCCG CGCTGCC GCCC GGCGGCG TTCGTTGATCGGCTG RHE_CH00515 534268 - 533735 - | hypothetical protein TERM 516 534603 - 534620 + H 100 -12.7 -5.18355 | opp_overlap 534598 GGAAATAGTACCGCT TGCCGCC GAAA GGCGGCA TTTTTGATTTTTCGG TERM 517 535418 - 535442 + G 70 -10 -3.60792 | opp_overlap 535415 CGCCTGATATCATGG CCGTTGCCAA GGGCA TTGGCGGCGG TTTCCCGCTTGGCGC TERM 518 535839 - 535819 - g 73 -12.5 -3.14931 | GTCACCGCCGAGGAA GCCCGCGAG GGG CTCGCGCGC CTCGAGCGCGCCGCC argD 534694 - 535893 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein argF 535931 - 536845 + | ornithine carbamoyltransferase TERM 519 537702 - 537663 - g 74 -15 -2.62184 | opp_overlap 537660 537658 537656, overlap 537641 CGCTGGTCGAGACCA TCGACGCCGACGAGCTGA CCGA TCCGCTTGTCGGCACCGA ACGGCTGTTGTTCCG hslO 536936 - 537928 + | Hsp33-like chaperonin TERM 520 537965 - 537945 - f 93 -10.4 -4.56597 | opp_overlap 537944, overlap 537958 TCTCGGCGCCAAAAA CCCCTCCC AAAAG GGGAGAGG CTTGGATGCCGCACC RHE_CH00519 538138 - 538497 + | insertion sequence transposase protein TERM 521 538545 - 538576 + F 86 -11.6 -4.15044 | gap 1, opp_overlap 538541 538552, overlap 538550 CTCGCTGGAAAGCCT GGCAAGACCGCTTCG ATC CGAAGCGG-CTCGTC TTTATTGACGAGACC TERM 522 538550 - 538573 + F 71 -11.8 -2.80244 | gap 1, opp_overlap 538541 538552, overlap 538545 TGGAAAGCCTGGCAA GA-CCGCTTCG ATC CGAAGCGGCTC GTCTTTATTGACGAG TERM 523 538570 - 538552 - f 80 -14.6 -3.03635 | opp_overlap 538550 538545 GAAAGCCTGGCAAGA CCGCTTCG ATC CGAAGCGG CTCGTCTTTATTGAC RHE_CH00520 538607 - 539086 + | insertion sequence transposase protein apaG 539553 - 539161 - | ApaG TERM 524 539736 - 539764 + r 74 -12.4 -3.06492 | gap 1 TGTTCCCGCGGATCG GCGGCCGG-CTCC GGAC GAAGTCCGGCCGC TATTCCAGTCGCTCA metZ 540961 - 539777 - | O-succinylhomoserine sulfhydrylase TERM 525 539890 - 539851 - G 71 -11.3 -3.53444 | gap 1, opp_overlap 539865 CGATGCCGGCCGAAA GC-CGCACCGTGCCCGGC GAGAT GCCGAGTTCGGCGCGCGC CTCTTCCGTCAGGTT TERM 526 540529 - 540539 + g 76 -8.2 -4.14392 | ACACCTTGGTATTCG GGCG GAT CGCC TTTTCCCAGTTGGCG TERM 527 541008 - 540988 - RH 100 -6.8 -5.9218 | gap 1, opp_overlap 540988 541003, overlap 541000 541003 541005 CACATAACAAAAAAA CCGG-CCGC AAAA GCAGACCGG TTTCAACCCGGTCTT TERM 528 541003 - 541021 + rH 83 -8.8 -4.60255 | opp_overlap 540988 541003 541000 541005, overlap 540988 CCGGCCGCAAAAGCA GACCGGTT TCA ACCCGGTC TTTTTAGCCACTTGT RHE_CH00523 541268 - 541011 - | hypothetical protein dcd 541160 - 542251 + | 2'-deoxycytidine 5'-triphosphate deaminase RHE_CH00526 543803 - 543216 - | TetR family transcriptional regulator TERM 529 544252 - 544240 - g 74 -10.5 -3.75629 | overlap 544206 GACGGCGAAGCGAAA CGCGG TTG CCGCG GCGCAAGCAGTGCTG RHE_CH00527 543902 - 545020 + | HlyD family protein secretion protein TERM 530 546318 - 546285 - g 70 -11.7 -3.16881 | gap 1, opp_overlap 546283 546281 GATGGACCGCATCAA GGCGGCCGCCTATGCT TGG AGC-CATACGGCCGCC CCGATGCTATCAGGC RHE_CH00528 545017 - 548127 + | cation/multidrug efflux transport protein TERM 531 548839 - 548851 + G 70 -10.5 -3.64703 | opp_overlap 548838 548837 GCCCAGATCAGAACC GCGCC ATC GGCGC TTTCAGTCGCAGAAA RHE_CH00529 548200 - 549021 + | short chain dehydrogenase RHE_CH00530 549449 - 549162 - | hypothetical protein TERM 532 550098 - 550127 + G 100 -14.2 -4.63218 | overlap 550100 GCCGTGCTCTCCGGT CCGCCGGCCGCC ATGCGC GGCGGCTGGCTG TTTTATTGCACGGCG TERM 533 550100 - 550125 + G 91 -15.4 -3.93367 | overlap 550098 CGTGCTCTCCGGTCC GCCGGCCGCC ATGCGC GGCGGCTGGC TGTTTTATTGCACGG RHE_CH00531 549804 - 550184 + | hypothetical protein mcpAch 552344 - 550326 - | methyl-accepting chemotaxis protein TERM 534 552352 - 552376 + H 77 -11.3 -3.5594 | opp_overlap 552340, overlap 552354 552370 AATGTCACCCGATCT GGCCGGGCGCG CCG CGCGTCCGGTG TTTGGAAACTGGATT TERM 535 552354 - 552374 + H 87 -16.1 -3.35597 | opp_overlap 552340, overlap 552352 552370 TGTCACCCGATCTGG CCGGGCGCG CCG CGCGTCCGG TGTTTGGAAACTGGA TERM 536 553262 - 553310 + G 72 -4.3 -4.58283 | overlap 553263 553264 TGCGCTCTCGAACCA TCCGGTCGGCGTCGTCAAAGGCA CGG TGCATGAGGCGATGCTGGCCGCC TTTTTCCCGGCGTTG RHE_CH00533 552825 - 553631 + | amino acid ABC transporter substrate-binding protein RHE_CH00534 554056 - 553643 - | hypothetical protein TERM 537 554163 - 554115 - R 75 -13.8 -2.51872 | opp_overlap 554139, overlap 554110 554114 554112 GCCATTACAAGAGAT CGGCAGC-ATCTCGCGCCGGCGGG CGG CCTTGCGGCGCG-GATCGCCGCCG TGATGCCTTTCTGCG RHE_CH00535 554451 - 554104 - | hypothetical protein TERM 538 554139 - 554170 + g 79 -10.8 -3.89903 | gap 1, opp_overlap 554115 554114 554112 CTCGCGCCGGCGGGC GGCCTTGCGGC-GCG GAT CGCCGCCGTGATGCC TTTCTGCGCCTGTTT RHE_CH00536 555134 - 554463 - | putative transcriptional regulator protein RHE_CH00537 555905 - 555258 - | two-component response regulator protein TERM 539 555811 - 555796 - G 73 -6.8 -4.36914 | opp_overlap 555796 CGCGCGGCGACAAAA TCGCCG GCTT CGACGA TCGATTGGCAGCCTT RHE_CH00538 556396 - 555995 - | hypothetical protein TERM 540 556810 - 556842 + G 74 -5.4 -4.57569 | overlap 556809 CCGTGCTCTGGGAGG TGCGGCTGCCGCTC GACGA GACCGGCGCCCACA TTTTTCCGGAGCTGC RHE_CH00539 556512 - 556865 + | hypothetical protein TERM 541 557096 - 557062 - g 74 -2.6 -4.91109 | opp_overlap 557069 557071, overlap 557063 CGGCTACGACAAAAA TGCCGAGGTGCCGGAG GCG CTCTTGAAGCTCGGCT TCGGCTTTACCGAAA pyrD 556862 - 557950 + | dihydroorotate dehydrogenase 2 dinF 559269 - 557926 - | DNA-damage-inducible F protein (Na+ driven multidrug efflux pump) TERM 542 558185 - 558156 - G 80 -15 -3.21695 | CCATCAGGAAGGCAA GGGCGCCGGTGA GCCCCG TCACCGCCGCCC AGGGCAGATAGGTCG TERM 543 558289 - 558271 - G 74 -10.2 -3.8211 | GGCGAGCCAGAAGAA GGCGGAGA CGA TCGCCGCC AGCCCGAAGGACCAG TERM 544 558652 - 558633 - G 83 -7 -4.93296 | overlap 558635 TGAGCACGACAAAAA GCCCGGCG AGCG CGCCAGCC ATCTCACCGGCCATG TERM 545 559182 - 559139 - G 87 -18.9 -2.64616 | GGGTCACCCATATGA CCGACGACGGCGGTGCTCG TCAGCC CGAGCAGCGGCGTCGTCAG GAATCCGAGCGTCAT RHE_CH00542 559795 - 559277 - | hypothetical protein TERM 546 559435 - 559463 + g 71 -6.1 -4.36914 | gap 2 AGGCCTTCACCACTT CATCGACGCTCCG CTGCC CGGAG-G-CGATG TTTTCTGCCGCCGGC RHE_CH00543 560063 - 559797 - | hypothetical protein RHE_CH00544 560363 - 561190 + | methyltransferase protein TERM 547 561370 - 561337 - f 76 -5.1 -4.70659 | overlap 561338 561341 TTTCACATTCAAAAA TCCACCGCGTCCGGA TGTC TCCGGACGTGCTCGC GAACACGTCTGCAAT TERM 548 561882 - 561926 + G 100 -10.6 -4.72272 | gap 1 TTCGGCATCCGCGCC GGCCTCGTCCAGCTCGC-CAT CGAC ATGTGCGTGCTGGCCGCCGCC TTTTTCGTCACCACG RHE_CH00545 561399 - 562034 + | hypothetical protein TERM 549 562336 - 562309 - T 100 -20 -3.98826 | opp_overlap 562312, overlap 562312 CGAGTAACGGATAAA CAACCGACCCGA GATT TCGGGTCGGTTG CTGGGATGCCATCAT TERM 550 562312 - 562333 + T 85 -15.9 -3.16683 | opp_overlap 562309 562312 GTAACGGATAAACAA CCGACCCGA GATT TCGGGTCGG TTGCTGGGATGCCAT TERM 551 562333 - 562312 - T 100 -15.9 -4.11304 | opp_overlap 562312, overlap 562309 GTAACGGATAAACAA CCGACCCGA GATT TCGGGTCGG TTGCTGGGATGCCAT RHE_CH00546 563133 - 562672 - | hypothetical protein TERM 552 563150 - 563164 + r 74 -7.8 -4.30014 | overlap 563151 TCTTTCTCCTTGTTG TGGCTC AGC GAGCCG TTTTGCGTTCGTGGA RHE_CH00547 563654 - 563154 - | putative transcriptional regulator protein RHE_CH00548 563786 - 564418 + | hypothetical protein TERM 553 564546 - 564535 - g 70 -7.2 -4.07568 | overlap 564536 CTGGTTTGCGGAAAA GGGC TGGC GCCC GCGCGCCCATCAGCT TERM 554 564621 - 564639 + G 100 -14.6 -4.40358 | TTGCGCCGACCGGCG CCGGCAAG ACG CTTGCCGG TTTTCTGCCGTCGCT lhr 564467 - 566977 + | ATP-dependent RNA/DNA helicase protein TERM 555 567510 - 567471 - g 76 -5.8 -4.63527 | gap 3, overlap 567491 567492 CCACGAGCCGAAAAA CGGGCTGCAGAGCGGC-GA AATCG CCGGCCAC-CTGCA-CCCG TCGGCGACCGTGCGC RHE_CH00550 566977 - 567726 + | putative phosphoesterase protein RHE_CH00551 568544 - 567963 - | hypothetical protein TERM 556 568443 - 568433 - G 77 -2.4 -5.03314 | overlap 568435 GCCAGCTGGAAAAAA GCCC TTC GCGC TGATCGAAGACGGCA RHE_CH00552 569201 - 568644 - | pyrimidine reductase protein RHE_CH00553 570194 - 569394 - | hypothetical protein TERM 557 569597 - 569577 - G 78 -14.7 -3.09273 | GCTCTTGAAGAGATA GGCGCGCAC CGT GTGCACGCC GTTCGGAATATTTGC RHE_CH00554 571117 - 570194 - | putative permease protein TERM 558 571273 - 571289 + r 79 -3.6 -5.15117 | overlap 571266 TGCGCGGACCGATAT GTCCGG CATAA TCGGGC TTTTTTCAGGTTTTG TERM 559 571388 - 571366 - R 74 -11.2 -3.24597 | opp_overlap 571360, overlap 571364 AAGCCGGAACCAAGA CCCTTCCCCC CAA AGGGGAGGGG CTAGCGTGTTGCGCC RHE_CH00555 575332 - 571583 - | putative hemagglutinin protein TERM 560 572628 - 572669 + g 76 -9.3 -4.03234 | gap 1, overlap 572629 AGGGCTGTTTCCGGC TGCGCCTG-ATCGGCGGCCG GCG CGCTCGCCGTTGCAGGGGCG TTTATATCGGCGGCG TERM 561 573232 - 573264 + g 83 -7.7 -4.59773 | gap 1, overlap 573233 CTTTCTTGCCGGGTC GCAGCC-GCTTGCC CAGGCT GGCGAGCAGGCTGG TTTTTGCCGGTGCCG TERM 562 573899 - 573915 + g 72 -7.9 -4.15044 | overlap 573898 573881 CGCCCGCGGATCGGT CGGCGGC GCC GCTGTCG TTTCTTCGAGCCGGG RHE_CH00556 576356 - 575673 - | DNA glycosylase protein TERM 563 575745 - 575729 - G 70 -7.2 -4.01419 | overlap 575724 GATGAATGAAGGAAA GACCGG TCTCC CCGGCC CATTCATTGAAGGTC TERM 564 575765 - 575781 + g 76 -10.9 -3.75024 | CATTGAAGGTCTGTT GGATCAG CTG CTGATCC TTCTTCGTCGTGCCG TERM 565 576465 - 576478 + H 75 -2.4 -5.14563 | TCCACGGCTTGCGGG TTCG CGCTCT CGAA TTTTTTCGTGAAAAG TERM 566 578236 - 578220 - g 73 -11.5 -3.66803 | opp_overlap 578220 GGCGAAGATGGCAAA GGCCGCC GAG GACGGCC TTGCCTCAGGCGATG TERM 567 578341 - 578388 + G 85 -10.4 -4.28361 | gap 1, opp_overlap 578324 578350 GCCCTTCGCAAGGCC CGCAT-CGAAGCCGGCGCCGACA CGA TGATGGCGCTGGCCGCGGAGGCG TTTTGATGGAGTTCC acd1 576598 - 578394 + | acyl-CoA dehydrogenase protein fadA 578617 - 579825 + | acetyl-CoA acetyltransferase TERM 568 580880 - 580900 + G 73 -12.5 -3.14564 | opp_overlap 580879, overlap 580883 ACGGAGCTCAAGCAT GTCGGCGTC GTC GGCGCCGGC TTCATGGGCGCCTCG TERM 569 581113 - 581132 + G 78 -15 -3.03124 | CGATCTCGCCAATGT CGGCCTCG TTAT CGAGGCCG TGTTCGAGGATCGCG fadB2 579893 - 582109 + | enoyl-CoA hydratase protein TERM 570 582490 - 582506 + G 71 -5.7 -4.27192 | overlap 582491 CTTCATTCAGCCGGA TGACGGC GCC GCCGACG TTTTCGTCCACATTT cspA1 582428 - 582637 + | cold shock protein TERM 571 582714 - 582731 + T 100 -10.5 -5.95539 | opp_overlap 582714 TGAGACGGCAGGGAA GGTCGGG TGAG CCCGGCC TTTTTTTGTTTCGGG RHE_CH00561 583225 - 582782 - | MarR family transcriptional regulator TERM 572 583112 - 583125 + g 71 -8.1 -3.96327 | CGCGGCCAGCACCTG CCAGC GCGC GCTGG TTTGTCCTGCAGGCT RHE_CH00562 583340 - 583744 + | hypothetical protein RHE_CH00563 583912 - 584307 + | hypothetical protein RHE_CH00564 585525 - 584323 - | transporter, permease protein TERM 573 585306 - 585280 - G 86 -8.1 -4.60487 | gap 2, overlap 585285 CAGCAGGGCGAAAAA GATCA-C-CGGCC TGC GGCCGAGGTGATC GGAGATAGAGCCGGC RHE_CH00565 585605 - 586219 + | TetR family transcriptional regulator RHE_CH00566 589730 - 586227 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 574 588594 - 588614 + g 100 -18.3 -3.64703 | opp_overlap 588587 588586 GGCGAAATCGTCGCG CTGGCCGGC ACG GCCGGCCAG TTTGCGTCGGAGGAA TERM 575 589365 - 589389 + g 72 -4.1 -4.62069 | opp_overlap 589343 589364, overlap 589367 589367 GATCAGCGAGATCAG CGCCACGATCG TTG CGACCGTCGGG TTTTTGCCGTAGCGC TERM 576 590075 - 590102 + G 72 -2.5 -4.7153 | overlap 590080 ACCTTATCATGCCGA TCGTCGGCGCC ATTTTC GGCGGCTTCGA TTTTTCCAATTATTT mscL 589951 - 590388 + | large-conductance mechanosensitive channel transmembrane protein TERM 577 591044 - 591021 - g 76 -13.9 -3.15663 | AGGCATCTTCATCAA CACCCCGTC CAATCC GACGGGGTG GACCGCGACGAAGAA aspB1 590509 - 591675 + | aspartate aminotransferase TERM 578 592001 - 592015 + G 86 -7 -4.96848 | overlap 592002 CTTCCGCTGGGCGGT GGCGCC GGC GGCGCG TTTTTATCTCGGCGA TERM 579 592002 - 592014 + G 70 -10.5 -3.57627 | overlap 592001 TTCCGCTGGGCGGTG GCGCC GGC GGCGC GTTTTTATCTCGGCG galE2 591879 - 592913 + | UDP-glucose 4-epimerase protein TERM 580 593519 - 593530 + G 76 -7.2 -4.25104 | CGACCTTTATGTTCT CCGG CAAC CCGG TTTTCGTCGCCACCG TERM 581 593793 - 593769 - g 75 -3.4 -4.83169 | overlap 593770 593771 ACGGCTGCAGAAAAA TCCGTCGACG CCGCC CGTCATCGGC ATCATCGATCTCGAC TERM 582 594859 - 594807 - g 74 -12.9 -3.29461 | overlap 594842 CAACCTCTGCCAGAA CCTCGGC-ATCGCCTCGGTCGCCGA GGGCG TCGA-AAGCGAAGCGATCGCCGAGG GGCTGAAGGCGATCG RHE_CH00570 593299 - 594990 + | putative sensory box/GGDEF family protein RHE_CH00571 595073 - 596125 + | enoyl-CoA hydratase RHE_CH00572 596368 - 597306 + | putative beta-lactamase family protein TERM 583 597325 - 597380 + T 100 -23.6 -4.45083 | gap 2, opp_overlap 597334 597335, overlap 597331 597335 CCCGTCACGTCAGGG CCGAAG--CAAGGCGCGCCGCACGGA TCGGAT TCCGTGCGGCGCGCTTTGGTCTTTGG TTTTATGCATGTCGC TERM 584 597331 - 597372 + T 100 -28.2 -2.82584 | opp_overlap 597334 597335, overlap 597325 597335 ACGTCAGGGCCGAAG CAAGGCGCGCCGCACGGA TCGGAT TCCGTGCGGCGCGCTTTG GTCTTTGGTTTTATG TERM 585 597369 - 597334 - T 100 -21.9 -3.34344 | opp_overlap 597331 597325 597335, overlap 597335 TCAGGGCCGAAGCAA GGCGCGCCGCACGGA TCGGAT TCCGTGCGGCGCGCT TTGGTCTTTGGTTTT TERM 586 597335 - 597368 + T 100 -25.4 -4.05229 | opp_overlap 597334 597335, overlap 597331 597325 CAGGGCCGAAGCAAG GCGCGCCGCACGGA TCGGAT TCCGTGCGGCGCGC TTTGGTCTTTGGTTT TERM 587 597368 - 597335 - T 100 -25.4 -2.60392 | opp_overlap 597335 597331 597325, overlap 597334 CAGGGCCGAAGCAAG GCGCGCCGCACGGA TCGGAT TCCGTGCGGCGCGC TTTGGTCTTTGGTTT uvrD1 599493 - 597433 - | ATP-dependent DNA helicase protein RHE_CH00574 599862 - 599596 - | hypothetical protein TERM 588 600383 - 600395 + r 72 -10.5 -3.53012 | CGAAACAGCTATCCC GGGCG CAA CGCCC TTTACGCCAAAACCC RHE_CH00575 600755 - 600510 - | hypothetical protein RHE_CH00576 600997 - 601380 + | hypothetical protein TERM 589 602044 - 602034 - g 84 -8.2 -4.49556 | GGCCGACGAAACAAA CGGG CTG CCCG CCGCAAAAATGGACG RHE_CH00578 601873 - 602067 + | hypothetical protein murA 602158 - 603450 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase RHE_CH00580 603608 - 604039 + | hypothetical protein TERM 590 604119 - 604133 + G 71 -5.6 -4.36914 | ATCGGAAGGTTTCGA GCAGCA TTT TGCCGC TTTTCTGACGACAAA hisD 604081 - 605376 + | histidinol dehydrogenase TERM 591 605612 - 605595 - g 74 -10.5 -3.73872 | ATCAAGACGGAAGAA GGCGGCG ATGT CGCCACC CATATCCTGTCGCTC RHE_CH00582 605385 - 605858 + | hypothetical protein TERM 592 606024 - 605997 - g 70 -10.4 -3.5518 | opp_overlap 606007 606010 606015, overlap 605998 CCAATACCTATATAA GGTCCGCCGGCG TTCG CGCCGGCGAGCG CGATCCGTTCGTCGA TERM 593 606023 - 605998 - g 72 -13.9 -2.72626 | opp_overlap 606007 606010 606015, overlap 605997 CAATACCTATATAAG GTCCGCCGGCG TTCG CGCCGGCGAGC GCGATCCGTTCGTCG RHE_CH00583 605855 - 606340 + | putative arsenate reductase (phosphatase) protein TERM 594 606434 - 606417 - f 71 -9.1 -3.71649 | gap 1 CGCCCAAATTTTAAA GGC-GCGC GTT GCGCTGCC TCTGCAACCCACAGG infA 606464 - 606682 + | translation initiation factor IF-1 maf 606719 - 607339 + | Maf-like protein TERM 595 607348 - 607404 + F 74 -3.3 -4.89852 | gap 4, opp_overlap 607359 607360, overlap 607325 607352 607381 607382 GGGCTGACCCACGGC CAATG-CTTAAAGCGCG-T-CAC-GATCT TTC AGATCTGCGCGTCGCGCTTTAAGGCTTTG TTTTTATGCATGTCG TERM 596 607352 - 607400 + F 74 -2.7 -4.97405 | gap 4, opp_overlap 607359 607360, overlap 607348 607381 607382 TGACCCACGGCCAAT G-CTTAAAGCGCG-T-CAC-GATCT TTC AGATCTGCGCGTCGCGCTTTAAGGC TTTGTTTTTATGCAT RHE_CH00586 607476 - 607688 + | zinc-binding protein TERM 597 607769 - 607756 - T 75 -2.3 -5.04987 | AAGACCGTCAAAAAA GAGTC ATTT GACGC TTGCCATGGGCGAAC RHE_CH00588 608825 - 608004 - | hypothetical protein nhaA 610299 - 609118 - | Na+/H+ antiporter protein TERM 598 609441 - 609390 - G 76 -6.5 -4.4078 | gap 1 GTTTTCCAAGCAAAA GTC-CTGCCGCCACGCCGAGGG TCAATGGCT CGGTCAGCGTGGCAGCCGAGAC GCCAGAGAAGGAGAC TERM 599 610430 - 610470 + r 74 -11.2 -3.36327 | gap 2, opp_overlap 610427 610435 610438, overlap 610438 TTGCCAGCGAAATCG GCAAAGAG-GC-GCAGGTCC GTT GGACCTGCCGCTCGCTTCGC TTCTCACTGGAATGC TERM 600 610463 - 610435 - R 81 -13.1 -3.64236 | opp_overlap 610430 610438, overlap 610427 610438 AGCGAAATCGGCAAA GAGGCGCAGGTCC GTT GGACCTGCCGCTC GCTTCGCTTCTCACT TERM 601 610461 - 610438 - R 73 -13.2 -2.63381 | gap 1, opp_overlap 610430 610438, overlap 610435 610427 GAAATCGGCAAAGAG GC-GCAGGTCC GTT GGACCTGCCGC TCGCTTCGCTTCTCA TERM 602 610438 - 610461 + r 73 -13.2 -2.57985 | gap 1, opp_overlap 610438 610435 610427, overlap 610430 GAAATCGGCAAAGAG GC-GCAGGTCC GTT GGACCTGCCGC TCGCTTCGCTTCTCA RHE_CH00590 611091 - 610474 - | hypothetical protein RHE_CH00591 611918 - 611127 - | arylamine N-acetyltransferase protein RHE_CH00592 612492 - 612031 - | hypothetical protein RHE_CH00593 612592 - 613485 + | LysR family transcriptional regulator RHE_CH00594 613851 - 614138 + | hypothetical protein TERM 603 614145 - 614175 + F 74 -6.7 -4.4648 | opp_overlap 614147 614148, overlap 614146 614148 AAAGGCTGACAACGA AAGCGGAGGTCCG ATGCC CGGGCCTCCGTGC TTTTCTGCTAAACCT TERM 604 614146 - 614174 + F 70 -10.2 -3.27406 | opp_overlap 614147 614148, overlap 614145 614148 AAGGCTGACAACGAA AGCGGAGGTCCG ATGCC CGGGCCTCCGTG CTTTTCTGCTAAACC TERM 605 614173 - 614147 - f 77 -10 -3.99678 | opp_overlap 614146 614145 614148, overlap 614148 AGGCTGACAACGAAA GCGGAGGTCCGA TGC CCGGGCCTCCGT GCTTTTCTGCTAAAC TERM 606 614172 - 614148 - f 77 -13.5 -2.99325 | opp_overlap 614146 614145 614148, overlap 614147 GGCTGACAACGAAAG CGGAGGTCCGA TGC CCGGGCCTCCG TGCTTTTCTGCTAAA TERM 607 614148 - 614172 + F 83 -15 -3.20028 | opp_overlap 614148 614147, overlap 614146 614145 GGCTGACAACGAAAG CGGAGGTCCG ATGCC CGGGCCTCCG TGCTTTTCTGCTAAA TERM 608 614618 - 614575 - g 76 -8.8 -4.23213 | gap 1, overlap 614609 614615 CCTACACGGAAGAAA CGC-TGGCGCGCGTCGTCGAC CAT GTCGATGAAACGCAACAGGCG CTCGGGCGGCAACTG RHE_CH00595 614202 - 615089 + | hypothetical protein TERM 609 615698 - 615710 + G 74 -4.7 -4.56775 | overlap 615687 GTTCATGTCCTGCCG CCGCG GGA CGCCG TTTTTGCCGCCGCCT RHE_CH00596 615092 - 615868 + | hypothetical protein RHE_CH00597 615865 - 616362 + | hypothetical protein RHE_CH00598 616868 - 616551 - | hypothetical protein TERM 610 616582 - 616600 + g 71 -6 -4.36914 | opp_overlap 616589, overlap 616576 AGGGACCTTGCCGCT TCAAGCAG AAG CTGCTTCA TTTTCTCGCGAACCG RHE_CH00599 618235 - 617024 - | arsenical pump membrane protein TERM 611 617888 - 617865 - G 73 -11 -3.56987 | gap 1 CAGATCAGCAGATAA GGCATCGGGTC TTT GACCCG-CGCC GTCCGGCAGGCGGCA TERM 612 618125 - 618106 - G 89 -10.7 -4.31166 | overlap 618107 TCAGAAAGAGATAAA CGTCGCC GCCCTT GGCGACG CCCGCCAGGACATCA TERM 613 618304 - 618319 + H 71 -7.5 -4.07618 | GCGTTCGGTTGGTGC GCGGC AGAACA GCCGC TTTGGTTGTTGCGAG RHE_CH00600 618513 - 618740 + | hypothetical protein RHE_CH00601 619386 - 618817 - | TetR family transcriptional regulator RHE_CH00602 619566 - 619958 + | translation initiation inhibitor protein RHE_CH00603 620930 - 619995 - | putative N-acetylneuraminate lyase subunit protein appF 621894 - 620941 - | oligopeptide ABC transporter, ATP-binding protein appD 622919 - 621891 - | oligopeptide ABC transporter, ATP-binding protein dapAch1 623836 - 622919 - | dihydrodipicolinate synthase protein TERM 614 623546 - 623516 - G 93 -18.2 -3.30124 | opp_overlap 623538, overlap 623533 GGTGACCGTGTAGAA CGGCGCCGTCACGA CAA CCGCGTCGGCGCCG GCCGATTTGGCGATC appC 624731 - 623856 - | oligopeptide ABC transporter, permease protein appB 625694 - 624735 - | oligopeptide ABC transporter, permease protein appA 627356 - 625770 - | oligopeptide ABC transporter, substrate-binding protein RHE_CH00610 628084 - 627353 - | transcriptional regulator protein RHE_CH00611 629319 - 628309 - | LacI family transcription regulator TERM 615 628376 - 628392 + g 79 -13.7 -3.53444 | overlap 628372 628378 628380 AGCAGAATGGGATGG CCGACGC CGG GCGTCGG TTGCTTGTTCAAGAG TERM 616 628380 - 628429 + g 71 -13.6 -2.5474 | opp_overlap 628410, overlap 628376 628372 628378 GAATGGGATGGCCGA CGCCG-GGCGTCGGTTGCTTGTTC AAGA GAACC-GCGACCGCCGCTGCGGCG ATCTTCTGAATCGGC TERM 617 628725 - 628750 + g 86 -17.7 -2.70932 | CGCCGGATTGCCCCA TCGCCTCAAGG TAAC CCTTGAGGCGA TCATTGGCAGGCACG rbsBch1 629635 - 630621 + | ribose ABC transporter, substrate-binding protein TERM 618 630671 - 630650 - f 91 -17.3 -3.27994 | opp_overlap 630653 630654 TTAAGGCCACAGGAA GCGCCGGCT GCCA AGCCGGCGC TGACCGCTGCCAGCC rbsAch1 630836 - 632269 + | ribose ABC transporter, ATP-binding protein rbsCch1 632325 - 633275 + | ribose ABC transporter, permease protein TERM 619 634628 - 634615 - g 93 -2.3 -5.52986 | overlap 634616 ATGGGAGGAAAAAAA GCTGC CCTG GCAGA AGCGGTATCTCTCGA RHE_CH00615 633503 - 634648 + | polysaccharidase protein TERM 620 635441 - 635429 - g 70 -10.5 -3.65201 | overlap 635419 GAAGAGCCTGAAGAA GGCGG CGC CCGCC AAAAGGCCCGCACCA RHE_CH00616 634737 - 635540 + | putative DNA helicase protein RHE_CH00617 637539 - 635560 - | putative DNA ligase protein TERM 621 636226 - 636243 + g 76 -9.9 -3.85698 | CTCGATATGCGGATT CATGCCT TTCC AGGCATG TTTCTGGAAAAAGCG TERM 622 636289 - 636256 - G 100 -11.7 -4.56775 | gap 1 ATGTTTCTGGAAAAA GCG-CTGCCGGCCG TTGATTC CGTCCGGCAGGCGC AGAAGCGCCAAGGGG TERM 623 637462 - 637482 + g 74 -9 -3.84451 | TGCTGCCGGTCTTTT GGCGGCAA CCGCC TTGCCGTC TTTCGATTTGGGAGC RHE_CH00618 638374 - 637541 - | putative DNA helicase protein TERM 624 637653 - 637663 + g 71 -4.6 -4.44667 | TCGACGACCTTGCCT TCGG GCG CCGG TTTCTTCTTCGGCGG TERM 625 638725 - 638740 + r 70 -5.4 -4.36914 | TTTGGTTTGCGCCTT TCGTCG AGCG CGATGA TTTTCTCGAGCGAAG RHE_CH00619 638960 - 638700 - | hypothetical protein RHE_CH00620 639104 - 639538 + | putative membrane-anchored protein (osmotically inducible protein) TERM 626 640144 - 640090 - g 71 -10.7 -3.4072 | overlap 640091 GATCCGCGACGATAA GGGCGGCGTGATG-CTGGCCGATATCG TCG CGATTGCCACCAGCCATC-CGCCGCCA GCGGCTCCCGGCCGG TERM 627 640143 - 640091 - g 74 -14.2 -2.64218 | overlap 640090 ATCCGCGACGATAAG GGCGGCGTGATG-CTGGCCGATATCG TCG CGATTGCCACCAGCCATC-CGCCGCC AGCGGCTCCCGGCCG TERM 628 640464 - 640440 - g 76 -13.5 -3.14132 | CGCTGCTGGCAGGAA TCCGCGCCGCC ATC AGCGCCGCGGA GGCGCAGGGCATAAG RHE_CH00621 639587 - 641071 + | hypothetical protein TERM 629 641262 - 641280 + G 82 -14.6 -3.36785 | TTTCGGCGGGGCGGC GATCGGCG GTT CGCCGATC TTCGTTCGCCTGTCA RHE_CH00622 641179 - 642084 + | putative transporter permease protein RHE_CH00623 643588 - 642050 - | hypothetical protein RHE_CH00624 645346 - 643751 - | two-component sensor histidine kinase/response regulator hybrid protein RHE_CH00625 645776 - 645351 - | two-component response regulator protein RHE_CH00626 647379 - 645763 - | two-component sensor histidine kinase protein TERM 630 646024 - 646006 - G 77 -3.9 -4.86621 | gap 1, opp_overlap 646008, overlap 646009 ATCCCTAACGAAAAA CAC-GTTG CGGG CAACCGTG CCGTCCTTGCCGACG TERM 631 647617 - 647579 - H 74 -10.2 -3.56643 | gap 1, opp_overlap 647582, overlap 647580 TCGATATTGTGGAAA TGCCGCCCGA-ACGTGG CGATTT CCACGAGCCGGGCGGCC GCGATCGCCGCCGCC TERM 632 647616 - 647580 - H 76 -13.7 -2.73771 | gap 1, opp_overlap 647582, overlap 647579 CGATATTGTGGAAAT GCCGCCCGA-ACGTGG CGATTT CCACGAGCCGGGCGGC CGCGATCGCCGCCGC TERM 633 647967 - 647989 + H 76 -7 -4.58663 | gap 1, opp_overlap 647965 647967, overlap 647967 647968 GAGGAATACTCAATA G-GCAGCGG ACGCCG CCGCTGCGC TTTTTCCGAAATGAT TERM 634 648007 - 648025 + H 74 -7.5 -4.26903 | TTTCCGAAATGATTT TTCGATC GGACA GATCGAA TTTTCGTAAAATCGC RHE_CH00627 648102 - 648479 + | putative two-component response regulator protein RHE_CH00628 648955 - 649659 + | LuxR family transcriptional regulator TERM 635 649784 - 649774 - g 71 -5.4 -4.40561 | overlap 649771 649776 CGCGCTCAAAAAGAA GATC GCA GATC TCTCCGAGCCGGCCG RHE_CH00629 649688 - 650125 + | putative two-component response regulator protein RHE_CH00630 650875 - 650153 - | putative two-component sensor histidine kinase protein TERM 636 651022 - 650993 - R 100 -21.5 -5.30348 | opp_overlap 650995 AGGCAACAATAAAAA GAGGGCGCCGGCT CTGC AACCGGCGCCCTC TTCAAGGATGCGTTA TERM 637 650995 - 651020 + r 83 -16.1 -3.03243 | opp_overlap 650993 GCAACAATAAAAAGA GGGCGCCGGCT CTGC AACCGGCGCCC TCTTCAAGGATGCGT secD1 653599 - 651050 - | bifunctional preprotein translocase subunit SecD/SecF RHE_CH00632 654076 - 653684 - | hypothetical protein RHE_CH00633 655939 - 654122 - | putative potassium-efflux system protein TERM 638 655151 - 655139 - G 70 -10.5 -3.61715 | CATGCCGGCGAAGAA GGCGC CGA GCGCC AGCGACACGCCGAAC TERM 639 655196 - 655168 - G 78 -14.5 -3.05343 | GCGACACGCCGAACA GCTTGGCCGCGCC GAA GGCGACGCCAAGC GCGATGGCGAGCACA TERM 640 655693 - 655650 - G 72 -8 -4.17491 | opp_overlap 655688, overlap 655651 AGCAAAGTCGCAAAA CCGATCTGCACGATCGCGCC AGGC AGCGCGATGCCGCGGACCGA TAGCAGGTCTTTGAG RHE_CH00634 655983 - 656270 + | hypothetical protein RHE_CH00635 657707 - 656286 - | putative glycosyltransferase protein TERM 641 658378 - 658408 + G 86 -13.3 -4.08767 | gap 1, opp_overlap 658367 ATCAGGCTCGTGGAG CGCAGGCAGGTAGC TTGC GCGACC-GCCTGCG TTTTGCCGGCCTCGA TERM 642 658810 - 658851 + G 74 -10.1 -3.78409 | gap 1 TTTCCGATCTGATGA CGGCGATCATCCGCATCGTC ATG GTCGACGTGGAA-ATCGCCG TTTCGCTTCGCTTCA mcpE 658353 - 659984 + | methyl-accepting chemotaxis protein RHE_CH00637 660048 - 660344 + | hypothetical protein TERM 643 660641 - 660616 - g 72 -7.5 -4.20868 | gap 1, overlap 660613 CGCGGAAAAGAAGAA CCGTGCCCGCCA GGC CGGCGC-CACGG GATGGATCGTCAAGC cheY1 660341 - 660706 + | chemotaxis two-component response regulator protein TERM 644 661773 - 661737 - g 100 -14.3 -4.17048 | TCGCGTCGAAAAGAA GGAATCGGCCGCCGCCG CAG CCGCCGCGGCCAATGCC GCCGCCCAGAACAAC TERM 645 662204 - 662193 - g 72 -7.2 -4.12942 | overlap 662183 662184 662194 CGAAACGCCGGAAAA GCGG GCTG CCGC CGGCAAGAACACCGA cheA 660724 - 663006 + | chemotaxis two-component sensor histidine kinase protein cheW1 663010 - 663477 + | chemotaxis signal transduction protein cheRch1 663576 - 664382 + | chemotaxis methyltransferase protein TERM 646 664494 - 664470 - g 71 -13.5 -2.53263 | CCGACCCGGAAGTCA GCGTCATCGGC CAG GCCGGCGACGC GCTGGAAGCGCGCGA cheBch1 664379 - 665422 + | chemotaxis-specific methylesterase cheY2 665423 - 665812 + | chemotaxis two-component response regulator protein cheD 665809 - 666363 + | chemoreceptor glutamine deamidase CheD RHE_CH00645 666380 - 666769 + | hypothetical protein TERM 647 667546 - 667564 + G 77 -13.8 -3.2794 | overlap 667563 ATCCGTCACCTCGTC GCCTCGGC CGT GCCGGGGC TTGATGTCGATGACG TERM 648 668102 - 668081 - g 81 -15.9 -3.04144 | overlap 668064 668065 GCCGCATCGCCAAGA TGGTCGGCG AGCC CGCCGACCA GGCCAAGATCGACGC TERM 649 668434 - 668462 + G 78 -15.9 -2.78715 | GAATTGCCGGACTTC GCGCCTGCGGCAG GGG CGGCCGGAGGCGC TCTCATGGACGGCTT fliF 666964 - 668655 + | flagellar MS-ring protein TERM 650 668662 - 668677 + F 90 -11.8 -4.34488 | opp_overlap 668659 668657 668656 GCAGCATAACGAGGA GGCCGG GCAA CCGGCC TTTCTTGTCGGTATC RHE_CH00647 669143 - 669847 + | LuxR family transcriptional regulator TERM 651 670188 - 670235 + G 86 -8.5 -4.58395 | gap 1, overlap 670163 670162 GGCGGCCCCCGGTCC GGCAGATTTCTCGCCCTTCATG ACGCG CCTGAAGGATG-GAATTCTGCC TTTTTCCGGCCTCGC RHE_CH00648 669856 - 670602 + | LuxR family transcriptional regulator RHE_CH00649 671091 - 670651 - | hypothetical protein TERM 652 670944 - 670929 - G 83 -6.8 -4.93877 | overlap 670930 670931 CCGGATGAAAGAAAA GCTCCG CCGC CGAAGC GACGAGATCGGCCAG flhB 672218 - 671097 - | flagellar biosynthesis protein FlhB TERM 653 671415 - 671449 + g 76 -9.2 -4.07687 | gap 1 GGCGATCATGCGCCG GCGGGC-GCGGTCGC GCATCA GCGAGCGCTGCCGGC TTTTGACAAAGGGGT TERM 654 671706 - 671694 - G 72 -2.6 -4.77036 | CCTCAGCACGAAAAA CAGG ATGAG CCCG ACGACGACGACCTTG TERM 655 671951 - 671939 - G 72 -2.6 -4.70887 | TGACGAATAAAGAAA GGAC ATCCG GCCC CGTTTCGATCTTCCA TERM 656 672094 - 672104 + g 78 -6.8 -4.57073 | opp_overlap 672093 672080, overlap 672079 AGCTCGCGCGAAAAC GGCA CGT TGCC TTTTTCCGCGGCATC TERM 657 672312 - 672270 - R 100 -15.8 -5.83211 | gap 1, opp_overlap 672281 CACCAAAACAAAAAA CTGTAGCGCGTCGC-GAAA CCCGGT TTTCTGCGACGCGCTATAG AGCGCAGCCTATCGA TERM 658 672380 - 672360 - R 74 -11.8 -3.15544 | opp_overlap 672337 672359 672369 TTGCACGGCGATCAA CAGCCGCC TTTCG GGCGGCCG GATTTGTCAACAGTC fliG 673444 - 672404 - | flagellar motor switch protein G fliN 674116 - 673472 - | flagellar motor switch protein TERM 659 673584 - 673599 + g 78 -4.6 -4.77165 | CCGTTCACCATGATC TCGACG GGTT CGCCGA TTTTCTTGTCGAGAG fliM 675063 - 674113 - | flagellar C-ring protein motA 675798 - 675064 - | flagellar motor protein MotA TERM 660 676077 - 676092 + H 71 -8.2 -3.89346 | opp_overlap 676077 676078, overlap 676078 TCTAAAGGAGACGAA TGGGCG CTCG CGCCCG TTTCTGAGATGCCGC flgF 676190 - 676924 + | flagellar basal body rod protein FlgF TERM 661 677707 - 677720 + G 71 -5.9 -4.30576 | opp_overlap 677707 GCATTTCCGCGACAA GGGCG AGAA CGTCC TTTTCATCGTCGACA fliI 676928 - 678325 + | flagellum-specific ATP synthase RHE_CH00657 678328 - 678870 + | hypothetical protein TERM 662 678900 - 678927 + F 100 -14.9 -4.52589 | gap 1, opp_overlap 678898 678899 678896 GCTGAAGACAAGAGC GGGCTCC-GCCG CGAAC CGGCAGGAGCCC TTTTCTATGGCGGGC flgB 679032 - 679424 + | flagellar basal body rod protein FlgB flgC 679430 - 679846 + | flagellar basal body rod protein FlgC fliE 679850 - 680191 + | flagellar hook-basal body protein FliE flgG 680211 - 680999 + | flagellar basal body rod protein FlgG flgA 681016 - 681498 + | flagellar basal body P-ring biosynthesis protein FlgA flgI 681495 - 682616 + | flagellar basal body P-ring protein TERM 663 682668 - 682688 + G 71 -8.1 -3.8969 | opp_overlap 682641, overlap 682639 TGCTGCGCCGCCTGG CGCTGCCGG CAG CCGGCCTCG TTCTTCTGTCGATCC RHE_CH00664 682637 - 683152 + | hypothetical protein flgH 683149 - 683865 + | flagellar basal body L-ring protein fliL 683878 - 684384 + | flagellar biosynthesis transmembrane protein fliP 684381 - 685118 + | flagellar biosynthesis protein FliP TERM 664 685173 - 685139 - T 100 -18.7 -5.03314 | opp_overlap 685144, overlap 685144 TGTATTTGGAAAAAA GAAAACCCCGCCGGA TCCGC TCCGGCGGGGTTTTT CATGCAGTCGAGCCG TERM 665 685144 - 685168 + T 100 -18.6 -4.7373 | opp_overlap 685139 685144 TTGGAAAAAAGAAAA CCCCGCCGGA TCCGC TCCGGCGGGG TTTTTCATGCAGTCG TERM 666 685168 - 685144 - T 100 -18.6 -5.42198 | opp_overlap 685144, overlap 685139 TTGGAAAAAAGAAAA CCCCGCCGGA TCCGC TCCGGCGGGG TTTTTCATGCAGTCG RHE_CH00668 686823 - 685189 - | glycosyltransferase domain-containing protein TERM 667 685589 - 685610 + g 74 -13.7 -2.93348 | overlap 685584 GTGTCGATCCCGAGG TCGGCCGCC TGCT GGCGGCTGA TGTGGTCTTCGTAGG TERM 668 688254 - 688213 - g 74 -14.5 -2.567 | opp_overlap 688218, overlap 688212 688208 ATGAACATCACCAAC TTCACCGCTGGCCAGATCC AGTC GGCTCTGACCAACGTTGAA TCGGCTCTGAAGTCG flaCch1 687598 - 688503 + | flagellin C protein TERM 669 688526 - 688560 + F 95 -13.6 -4.14511 | opp_overlap 688519, overlap 688528 GGCACAAGGCTTTCA AGTTTCGCGGCCGG CTCATCC CCGGCCGCGAAATG TTTTAACATAAGGTT TERM 670 688528 - 688558 + F 100 -18.4 -3.6692 | opp_overlap 688519, overlap 688526 CACAAGGCTTTCAAG TTTCGCGGCCGG CTCATCC CCGGCCGCGAAA TGTTTTAACATAAGG flaCch2 688784 - 689692 + | flagellin C protein TERM 671 689734 - 689707 - f 84 -9.8 -4.40572 | gap 1, opp_overlap 689725, overlap 689709 689710 ATAACCGCCAGAAAA TATGGCCCGCCGG TCT CCGGCGGG-CACC GCCTATTCGAGCCGC TERM 672 689732 - 689709 - f 91 -14.6 -3.80535 | gap 1, opp_overlap 689725, overlap 689707 689710 AACCGCCAGAAAATA TGGCCCGCCGG TCT CCGGCGGG-CA CCGCCTATTCGAGCC TERM 673 689732 - 689710 - f 82 -16.2 -2.87598 | opp_overlap 689725, overlap 689709 689707 ACCGCCAGAAAATAT GGCCCGCCGG TCT CCGGCGGGCA CCGCCTATTCGAGCC TERM 674 689745 - 689767 + F 100 -19.2 -4.59489 | GCACCGCCTATTCGA GCCGCGCTTC GAT GAAGCGCGGC TTTCTTATTTCCGTT flaCch3 689937 - 690848 + | flagellin C protein TERM 675 690912 - 690937 + F 100 -15.5 -4.31164 | gap 1, opp_overlap 690915 AGCACAAAACCTCGA GAACCGCGTCCG AAA CGG-CGCGGTTC TTTCTATTATATCAA TERM 676 690934 - 690915 - f 74 -11.4 -3.36919 | gap 1, opp_overlap 690912 ACAAAACCTCGAGAA CCGCGTCCG AAA CGG-CGCGG TTCTTTCTATTATAT flaCch4 691085 - 692113 + | flagellin C protein TERM 677 692776 - 692787 + G 72 -7.2 -4.14472 | CAATCGTCGTCAGAG GGCC GACC GGCC TTTTCGACATATTGA RHE_CH00673 692313 - 692942 + | hypothetical protein TERM 678 693549 - 693533 - g 73 -8.7 -4.10007 | overlap 693522 ACAACGGCCGGAAAA CCCTTGC CCG GCAAGAG CGAGGGGCAGGCGGC TERM 679 693997 - 693985 - g 72 -7.7 -4.18018 | overlap 693987 GCTCGCCATGGAAAA GATCG GGA CGATC CTGAAGGAGAGGGGT motB 692939 - 694249 + | flagellar motor protein MotB TERM 680 694359 - 694335 - g 70 -10 -3.64703 | CCTGCCGCAGGCAAA GCGCAGGATC CCGAC GATCTTGCGC CGTACAAGATGCTGC motC 694260 - 695555 + | chemotaxis protein TERM 681 696314 - 696268 - g 77 -13.7 -3.29511 | gap 1, overlap 696246 696291 TCCAGGTGCGGAGAA CGCCGACGCCGCTGACGGCAGA ACCT TCCGGC-TCAGCCGCGCCGACG GGCGCGGCGTATCGA motD 695555 - 696982 + | chemotaxis motility protein RHE_CH00677 696960 - 697499 + | hypothetical protein RHE_CH00678 697768 - 698439 + | two-component response regulator protein flgE 698566 - 699870 + | flagellar hook protein FlgE TERM 682 700137 - 700113 - g 75 -14.3 -2.78596 | CATCCTCTCAGGACA GCGCTCAGCAG ACC CTGCTGAGCGG TCTGGAGGATCTCAA TERM 683 700429 - 700414 - g 74 -10.4 -3.6968 | overlap 700425 CGAGAAGGCCAATAA CGCGGT CAAG ACCGCG ACGGCCACAGGTGCG TERM 684 700958 - 700988 + G 71 -12.5 -3.02511 | gap 1, overlap 700960 GACCCGATGCGCCTG CG-CGATGGCGGCG TCAA CGCCGCCGGCGTCG TCTTGAACACGTCGG TERM 685 700960 - 700985 + G 72 -13.9 -2.73994 | overlap 700958 CCCGATGCGCCTGCG CGATGGCGGCG TCAA CGCCGCCGGCG TCGTCTTGAACACGT flgK 699890 - 701377 + | flagellar hook-associated protein FlgK TERM 686 701855 - 701832 - g 70 -12.4 -3.24924 | opp_overlap 701835, overlap 701830 CGCTGACCGACAAGA CGACCGCCAC GAGT GCGGCGATCG TTACCGCCCTGAACA flgL 701381 - 702433 + | flagellar hook-associated protein FlgL flaF 702470 - 702817 + | flagellar biosynthesis regulatory protein FlaF flbT 702814 - 703263 + | flagellar biosynthesis repressor FlbT flgD 703254 - 703682 + | flagellar basal body rod modification protein fliQ 703773 - 704039 + | flagellar biosynthesis protein FliQ TERM 687 704130 - 704147 + F 73 -12.7 -2.66316 | overlap 704128 TCTCGATCCGAATTG GGCGGAC CCAT GTCCGCC TCCTCTCATGAAGAG flhA 704174 - 706261 + | flagellar biosynthesis protein FlhA fliR 706258 - 707010 + | flagellar biosynthesis protein FliR RHE_CH00688 707018 - 707431 + | hypothetical protein TERM 688 707580 - 707558 - g 74 -9.9 -3.80083 | gap 1 AAAATTGAAGGCAAA TCGT-GCGGC CTTT GCCGCGACGA GCCTCGCCGAGAACG RHE_CH00689 707463 - 708026 + | hypothetical protein RHE_CH00690 708151 - 708516 + | hypothetical protein RHE_CH00691 708516 - 709055 + | hypothetical protein TERM 689 709080 - 709097 + F 100 -14.1 -4.05446 | opp_overlap 709080 TTATCGATGCAGCAA CGGCGCC TTCG GGCGCCG TTTGTCGTTGGGCCG TERM 690 709097 - 709080 - f 81 -14.1 -3.18912 | opp_overlap 709080 TTATCGATGCAGCAA CGGCGCC TTCG GGCGCCG TTTGTCGTTGGGCCG cpsF 709347 - 710186 + | N-acetyl mannosamine transferase protein TERM 691 710649 - 710666 + G 90 -8.3 -4.82901 | opp_overlap 710640 710639, overlap 710650 AGGAACCGGTGACTA CCGCCGG GGAG CCGGCGA TTTTTGTCGAACCGC TERM 692 710650 - 710665 + G 74 -11.8 -3.49419 | opp_overlap 710640 710639, overlap 710649 GGAACCGGTGACTAC CGCCGG GGAG CCGGCG ATTTTTGTCGAACCG RHE_CH00693 710357 - 712120 + | putative succinoglycan biosynthesis transport protein TERM 693 712113 - 712101 - f 74 -10.5 -3.65902 | TTCACGTGATGGAAA CGCGG CAA CCGCG GCGCTGAACGAACAT folDch 712241 - 713140 + | methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein aglR 714169 - 713141 - | LacI family transcription regulator TERM 694 714230 - 714242 + H 83 -9.1 -4.53034 | opp_overlap 714228 714230 TCCTGCCTCCAAATA GCGCT CAA AGCGC TTTTAATTATGTAGC TERM 695 715419 - 715434 + G 74 -6.1 -4.42974 | opp_overlap 715419 715418 CTGAGGGGACGAAAC TCGGC CAGGAT GCCGA TTTCTTCTATATGCC aglE 714467 - 715828 + | alpha-glucoside ABC transporter, substrate-binding protein TERM 696 715840 - 715861 + F 86 -17.3 -2.55213 | opp_overlap 715829 715840, overlap 715836 GTAATCGTTCATATA TGCCGCCGG CTTG CCGGCGGCA TGGCTTGCATGAGTG TERM 697 715861 - 715840 - f 87 -17.3 -2.88579 | opp_overlap 715840 715836, overlap 715829 GTAATCGTTCATATA TGCCGCCGG CTTG CCGGCGGCA TGGCTTGCATGAGTG aglF 716013 - 717026 + | alpha-glucoside ABC transporter, permease protein TERM 698 718113 - 718126 + G 72 -3.7 -4.64676 | CTTCGTCACTATCGT CGTGC CGCT GCTCG TTTTCTTCGGACTGC aglG 717028 - 718191 + | alpha-glucoside ABC transporter, permease protein aglA 718226 - 719878 + | alpha-glucosidase protein TERM 699 720266 - 720216 - g 71 -11 -3.53563 | gap 1, overlap 720202 720220 720228 720258 AGATCGCCGGCGAAA GCAAGCAGGAGATCGACCGCCGC GTGCGG GCGGCGGCCGAAAGCCTGCA-GC TGACGAAATATCTCG TERM 700 720263 - 720220 - g 85 -15.9 -3.51232 | overlap 720202 720216 720228 720258 CGCCGGCGAAAGCAA GCAGGAGATCGACCGCCGC GTGCGG GCGGCGGCCGAAAGCCTGC AGCTGACGAAATATC TERM 701 720255 - 720228 - g 83 -16.3 -2.88252 | overlap 720202 720220 720216 AAAGCAAGCAGGAGA TCGACCGCCGC GTGCGG GCGGCGGCCGA AAGCCTGCAGCTGAC aglK 719900 - 720988 + | alpha-glucoside ABC transporter, ATP-binding protein RHE_CH00701 721203 - 721517 + | hypothetical protein TERM 702 721546 - 721574 + T 100 -15.2 -5.04356 | opp_overlap 721526 721546 ACTGCCAATAGCAAA CCCGCGGGACGC TTCGC GCGCTCCGCGGG TTTTTGCTTATTTAC TERM 703 721574 - 721546 - T 95 -15.2 -3.92592 | opp_overlap 721546, overlap 721526 ACTGCCAATAGCAAA CCCGCGGGACGC TTCGC GCGCTCCGCGGG TTTTTGCTTATTTAC edd 723421 - 721601 - | phosphogluconate dehydratase TERM 704 721776 - 721793 + g 72 -2.6 -4.72272 | overlap 721777 CCCTTGATCGCGTCC AGGCGA ATGATG TCGCCG TTTTTGATGCGGGCG TERM 705 723220 - 723245 + g 73 -8.9 -4.07568 | overlap 723223 TGATGCCCAGATTGG GAACGCGGTCG CCGG CGAGCGCGTCC TTTTCGGCGGGGGAA pgl 724199 - 723501 - | 6-phosphogluconolactonase protein TERM 706 723594 - 723605 + g 82 -3.6 -5.15969 | GCTGCCTTCCGCCTT GGCG AGAA CGTC TTTTTTGCCTTCGCC TERM 707 723824 - 723843 + g 82 -5.6 -4.8622 | opp_overlap 723827, overlap 723827 TGACGACGTCGAAGG GAATGCCG ATCT CGGCGCTC TTTTTCGTTGCCAGC TERM 708 723914 - 723896 - G 79 -13.8 -3.53012 | opp_overlap 723896 723895 CTGCCGGCTGGTAAA GCGGCACG AAC CGCGCCGC CTTTGCCTTGCCCTG zwf1 725685 - 724210 - | glucose-6-phosphate 1-dehydrogenase ordL 727100 - 725820 - | oxidoreductase protein TERM 709 725893 - 725864 - G 95 -12.7 -4.28762 | overlap 725865 ACAAGGCTAGGAAAA GCAGCGGCGCCCG CATC CGGGCCCCGCCGG GAAAGGCAGGAATTT TERM 710 725892 - 725865 - G 86 -16.2 -3.16534 | overlap 725864 CAAGGCTAGGAAAAG CAGCGGCGCCCG CATC CGGGCCCCGCCG GGAAAGGCAGGAATT glnA1 728560 - 727124 - | glutamine synthetase protein TERM 711 727987 - 727999 + g 70 -10.5 -3.54424 | opp_overlap 727964 CGCCGAGGATGGAGC GGCCG GAC CGGCC TTTCGGCGGATGCAG TERM 712 729770 - 729749 - g 71 -9.5 -3.68351 | opp_overlap 729753, overlap 729753 CCCGCAGCATGGAAA CAAAGACCG TTCC CGGTCTTTA TTTCGTCGGGGAATG TERM 713 729753 - 729766 + G 84 -8.1 -4.49556 | opp_overlap 729749 729753 CAGCATGGAAACAAA GACCG TTCC CGGTC TTTATTTCGTCGGGG TERM 714 729766 - 729753 - g 84 -8.1 -4.47183 | opp_overlap 729753, overlap 729749 CAGCATGGAAACAAA GACCG TTCC CGGTC TTTATTTCGTCGGGG RHE_CH00707 728686 - 729867 + | putative oxidoreductase protein TERM 715 731332 - 731317 - g 71 -4.7 -4.42386 | overlap 731318 CCGCGACGCAGAAAA TGCGT GAGGCG ACGCA GCGCTTCGCCGAACT TERM 716 731973 - 731954 - g 74 -5.8 -4.41494 | gap 1, overlap 731968 CATCTTCAAGGAAAA TGC-GATCT CGA AGATCCGCA TCGAGGAACAGAGCG TERM 717 732567 - 732593 + G 85 -15 -3.62096 | opp_overlap 732536 GCCGGCATCGAGGCG GCCCGCGCCGGC GAA GCCGGCAAGGGC TTTGCGGTCGTCGCC mcpZch1 730470 - 733001 + | methyl-accepting chemotaxis protein TERM 718 733028 - 733048 + F 100 -16.1 -3.76373 | TTTCCATTCTTTCGA CGGTCCCGG TTT CCGGGGCCG TTTGCATGTTGGCAG TERM 719 733177 - 733197 + F 71 -6.7 -4.25104 | TTTCCTCTAATTTAG CCCTCGTTG TGC CGCCGGGGG TTTTGATGCCGCGCC TERM 720 733587 - 733574 - g 91 -9.5 -4.56133 | CGTCAAGAAGGAAAA CGGCG ATCG CGCCG TCGGCACCAAGCTTG TERM 721 733736 - 733757 + G 76 -10.9 -3.7511 | overlap 733744 CAATGTCGGCATTCT CTTCATCGG CATT CCGATGGAG TTCTATTATCAGCGC mcpZch2 733203 - 735050 + | methyl-accepting chemotaxis protein TERM 722 735080 - 735097 + F 75 -12.7 -3.1585 | opp_overlap 735090, overlap 735079 GCGGCCGCAGGATTG CGCCGCA ACAT TGCGGCG TCTTCCGTTCGATGC RHE_CH00710 735479 - 736234 + | transcriptional regulator protein TERM 723 736278 - 736248 - T 86 -15.4 -3.22223 | opp_overlap 736249, overlap 736249 GAAGTTTACGATGAA GCGCCCGCGCATCT CCG AGACACGCGGGCGT TTCGATGAAGGGCGG TERM 724 736277 - 736249 - T 91 -18.9 -2.53012 | opp_overlap 736249, overlap 736248 AAGTTTACGATGAAG CGCCCGCGCATCT CCG AGACACGCGGGCG TTTCGATGAAGGGCG TERM 725 736249 - 736277 + T 86 -14.5 -3.64703 | opp_overlap 736249 736248 AAGTTTACGATGAAG CGCCCGCGCATCT CCG AGACACGCGGGCG TTTCGATGAAGGGCG RHE_CH00711 736557 - 736321 - | hypothetical protein aceA 737868 - 736579 - | isocitrate lyase protein TERM 726 737298 - 737316 + g 78 -6.6 -4.64861 | overlap 737305 TCGGGATCAGCACCT TGCCGCCG AGA TGGCCGCA TTTCTTTTCCGAGGC TERM 727 738954 - 738967 + G 71 -5.2 -4.47183 | TATCGACATTCTGCG CGCC CGCTTC GGCG TTTCTTTCGGTCATG RHE_CH00713 738061 - 739470 + | putative transcriptional regulator protein potF 739595 - 740692 + | spermidine/putrescine ABC transporter, substrate-binding protein TERM 728 740702 - 740725 + F 100 -19.6 -3.75153 | opp_overlap 740693 CAGTAAGTCGATGCA GGCCCGGACG GAAA CGTCCGGGCC TTTCAATTACCCGGC potG 740784 - 741926 + | spermidine/putrescine ABC transporter, ATP-binding protein potH 741931 - 742842 + | spermidine/putrescine ABC transporter, permease component I protein TERM 729 743346 - 743367 + G 70 -10.1 -3.63515 | gap 1, opp_overlap 743332, overlap 743346 AGCCGCGCAGGATCT GG-GCGCGCC GCC GGTGCGCACC TTCTTCGAGATCACG potI 742846 - 743664 + | spermidine/putrescine ABC transporter, permease component II protein RHE_CH00718 745581 - 743689 - | hypothetical protein TERM 730 743746 - 743718 - G 83 -7.4 -4.56597 | gap 1 GCGTGCCGCCAAAAA GCGGAAC-CGGCG AGAT CACCGGGTTCGGC CATGAGCCGCCGACG TERM 731 743789 - 743767 - G 74 -9.9 -3.71848 | gap 1, opp_overlap 743753 743767, overlap 743775 GCCGCCGACGAAGAA CGGCAGAAGC GGCA GCT-CTGCCG TCTTGGCCGGATCGG TERM 732 745755 - 745711 - H 70 -10 -3.46008 | opp_overlap 745718 745719, overlap 745709 745719 ATCATAAAACGAAGA GCCGAACAGCGTCGCATGAA TCCAG TTTATGCGACGCGTTTAGGC TTGGGATCGGGCGGT TERM 733 745718 - 745748 + H 77 -11.2 -3.66654 | opp_overlap 745711 745709 745719, overlap 745719 AACGAAGAGCCGAAC AGCGTCGCATGAAT CCA GTTTATGCGACGCG TTTAGGCTTGGGATC TERM 734 745747 - 745719 - H 74 -11.8 -3.10028 | opp_overlap 745719 745718, overlap 745711 745709 ACGAAGAGCCGAACA GCGTCGCATGAA TCCAG TTTATGCGACGC GTTTAGGCTTGGGAT TERM 735 745719 - 745747 + H 79 -14.7 -2.79671 | opp_overlap 745711 745709 745719, overlap 745718 ACGAAGAGCCGAACA GCGTCGCATGAAT CCA GTTTATGCGACGC GTTTAGGCTTGGGAT TERM 736 746551 - 746537 - g 76 -5.6 -4.56597 | opp_overlap 746546 GGCGGTGGCGAAAAA GACGCC CGG GGCTTC GACGCTCGAAGCCTT TERM 737 746546 - 746564 + G 74 -13.2 -3.34344 | opp_overlap 746537 GAAAAAGACGCCCGG GGCTTCGA CGC TCGAAGCC TTCATTGCGCCCTAC TERM 738 747020 - 747036 + G 71 -8.7 -3.86346 | overlap 747012 CTCGCCGCTCTCGCC CGAGGGT TTC ACCTTCG TTTATGAAGGCATCA acsA1 745830 - 747782 + | acetoacetyl-CoA synthetase TERM 739 747968 - 747989 + T 100 -10.1 -5.26875 | overlap 747970 AACAGCACCCATTTG AAGGCAGCC TCCG GGCTGCCTC TTTTTTGCTTGCCCG TERM 740 747970 - 747987 + T 93 -12.7 -4.26777 | overlap 747968 CAGCACCCATTTGAA GGCAGCC TCCG GGCTGCC TCTTTTTTGCTTGCC RHE_CH00720 751841 - 748041 - | putative two-component sensor histidine kinase protein TERM 741 748344 - 748380 + g 80 -14.5 -3.14132 | opp_overlap 748344 GCCAGACGGGGTAAA GCGGATGGCGTTCGACA GGA TGTTGAGCGCGATCTGC TTGATCGAGCGCAGA TERM 742 749090 - 749122 + g 70 -9.8 -3.55444 | gap 1 AACGGATATCGCCCT CGGTG-CCGATGACG ACGA CGCCGTCGGTCGCCG TTTCCAGGATCGAGC TERM 743 749615 - 749644 + g 86 -12.1 -4.15222 | gap 1, overlap 749639 TCTCCTCGAGCCCTT CCGTCGCC-TCGTC CTC GGCGATGGCGCCGG TTTCTTCAGCGGCGT TERM 744 749984 - 750031 + g 90 -18.2 -2.82759 | overlap 749970 TGTCCACGATGCGAA GCGCCGGGGGCTCGTCTGCGGC ATCG GCCGCCGGCGCTTCACCGGCGC TCTCCTGCATCTCTT TERM 745 751950 - 751964 + H 77 -8.6 -4.20368 | opp_overlap 751949 GAAAGGGTTAACGAC TTGTGC GCC GCACAA TTTATGTTGCAATGC RHE_CH00721 752055 - 752504 + | hypothetical protein TERM 746 752556 - 752526 - f 81 -12.7 -3.60296 | opp_overlap 752531, overlap 752531 GATGCCGATCGGAAA CAAAAGGCTGGAC CTCGC GTCCAGCCTTTTT GTATATTGGTGAGGA TERM 747 752551 - 752531 - f 100 -12.6 -4.88918 | opp_overlap 752531, overlap 752526 CGATCGGAAACAAAA GGCTGGAC CTCGC GTCCAGCC TTTTTGTATATTGGT TERM 748 752531 - 752551 + F 100 -12.6 -5.10968 | opp_overlap 752531 752526 CGATCGGAAACAAAA GGCTGGAC CTCGC GTCCAGCC TTTTTGTATATTGGT TERM 749 752615 - 752629 + F 73 -9.2 -3.9398 | overlap 752616 752625 CGTATGTGACCCCCA TCGCGC CCG GCGCGG TTTATGCGGTTGTAG RHE_CH00723 753388 - 754377 + | metallopeptidase protein TERM 750 755391 - 755360 - g 72 -12.2 -3.30771 | overlap 755361 TTACATCGTCGACAA TGCCGGCGACCTCG TCAC CGAAGCCGCCGACG CAGGGATCGACACGG TERM 751 755390 - 755361 - g 77 -15.7 -2.58249 | overlap 755360 TACATCGTCGACAAT GCCGGCGACCTCG TCAC CGAAGCCGCCGAC GCAGGGATCGACACG TERM 752 757206 - 757177 - g 80 -16.5 -2.62735 | overlap 757179 757194 ACACGGTGCAGACGA CATTGGCCGCCCA CACA TTGGCGGCCAATG TCGAGAACCTCACCT TERM 753 757204 - 757179 - g 70 -13.3 -2.8547 | overlap 757177 757194 ACGGTGCAGACGACA TTGGCCGCCCA CACA TTGGCGGCCAA TGTCGAGAACCTCAC TERM 754 759015 - 758986 - g 80 -16.5 -2.62735 | overlap 758988 759003 ACACGGTGCAGACGA CATTGGCCGCCCA CACA TTGGCGGCCAATG TCGAGAACCTCACCT TERM 755 759013 - 758988 - g 70 -13.3 -2.8547 | overlap 758986 759003 ACGGTGCAGACGACA TTGGCCGCCCA CACA TTGGCGGCCAA TGTCGAGAACCTCAC rzcA 754521 - 759914 + | rhizobiocin/RTX toxin and hemolysin-type calcium binding protein RHE_CH00725 761160 - 760174 - | putative nucleotidyltransferase protein TERM 756 762637 - 762615 - g 72 -7.6 -4.13767 | opp_overlap 762633 GCGCCGACCCTAAAA CTCCGTTTCG GCT CGATGCGGAG CAGGTCGATGCTGTC TERM 757 765875 - 765889 + G 73 -11.4 -3.53811 | GCCGACGTCAGCCGG GCGCTC GAC GAGCGC TTTGGGCGAGATGCC traAch 761414 - 766087 + | conjugal transfer protein A TERM 758 766182 - 766194 + F 77 -3.3 -5.01811 | opp_overlap 766182, overlap 766176 TTTCCCGGAGCAAAA GTCGA TCC TCGCC TTTTTCATTTAATGG RHE_CH00727 766258 - 766692 + | hypothetical protein RHE_CH00728 766742 - 766909 + | hypothetical protein RHE_CH00729 767787 - 766906 - | LysR family transcriptional regulator iolA 768268 - 769764 + | methylmalonate-semialdehyde dehydrogenase (acylating) protein TERM 759 769815 - 769846 + F 70 -10.9 -3.34013 | opp_overlap 769820, overlap 769817 769820 GCCTGATAAGCCTCT GACAACCCCCTGG CATGGT TCAGGGGGTTGTG TTCATTGGGACCCTG TERM 760 769817 - 769844 + F 81 -13.5 -3.23853 | opp_overlap 769820, overlap 769815 769820 CTGATAAGCCTCTGA CAACCCCCTGG CATGGT TCAGGGGGTTG TGTTCATTGGGACCC TERM 761 769820 - 769841 + F 71 -9.4 -3.76048 | opp_overlap 769820, overlap 769817 769815 ATAAGCCTCTGACAA CCCCCTGG CATGGT TCAGGGGG TTGTGTTCATTGGGA TERM 762 770125 - 770110 - g 81 -10.4 -4.22346 | GAAACTCAGGGAAAA TGCCGC AGAC GCGGCA GGCATTCCGCAGGCT RHE_CH00732 770109 - 770381 + | exodeoxyribonuclease III protein exoR1 771235 - 770438 - | exopolysaccharide production negative regulator protein RHE_CH00734 771719 - 771255 - | hypothetical protein rirA 772463 - 772945 + | iron-responsive transcriptional regulator TERM 763 772971 - 772994 + F 100 -16 -5.10461 | opp_overlap 772971 AACAGACTTGTAAAA CCGCGGTTGC CCGG GCAGCCGCGG TTTTTGTTGCGTCGC TERM 764 772994 - 772971 - f 95 -13.8 -4.1413 | opp_overlap 772971 AACAGACTTGTAAAA CCGCGGTTGC CCGG GCAGCCGCGG TTTTTGTTGCGTCGC TERM 765 773990 - 773980 - g 71 -5.4 -4.43309 | opp_overlap 773978 773980 CAAGGGCAAGGAAAA GATC GAC GATC TGGTTTTCGCTATCA dppAch1 773279 - 774874 + | dipeptide ABC transporter, substrate-binding protein TERM 766 774910 - 774946 + F 78 -13.6 -3.05343 | CCGGCAGAGCTGGGC GCAGCCGGCGGTCAGG AACCC CCTGACCGCCGGAAAC TATTGGACATCTGCC dppBch1 775067 - 775966 + | dipeptide ABC transporter, permease protein dppCch1 775976 - 776866 + | dipeptide ABC transporter, permease protein dppDch1 776866 - 777882 + | dipeptide ABC transporter, ATP-binding protein TERM 767 778553 - 778590 + G 81 -15.5 -3.01712 | GGTGATGGTGATGTA TCTCGGCCGTCCGGTCG AGAC CGGTCCGGCGGCCGAGG TCTTCGCCCGGCCGC dppF 777879 - 778832 + | dipeptide transporter ATP-binding subunit gntK 778860 - 779399 + | gluconokinase protein RHE_CH00742 780636 - 779389 - | putative oxidoreductase protein RHE_CH00743 781210 - 780710 - | hypothetical protein RHE_CH00744 782262 - 781210 - | chalcone synthase protein RHE_CH00745 782432 - 782968 + | hypothetical protein rpoE1 782989 - 783618 + | RNA polymerase sigma factor protein (sigma-24) RHE_CH00747 783615 - 784418 + | hypothetical protein RHE_CH00748 784527 - 785642 + | glycosyltransferase TERM 768 786211 - 786244 + G 77 -4.5 -4.85545 | overlap 786211 786215 AATATGGACGCGTTG TCGTCGTTGAGGACG ATCT CGTCGTCAACCCTGA TTTTCTTCATTTCAT RHE_CH00749 785919 - 786890 + | hemolysin protein RHE_CH00750 786883 - 787494 + | acetyltransferase protein RHE_CH00751 787458 - 788102 + | putative acetyltransferase protein RHE_CH00752 788108 - 788968 + | SAM-dependent methyltransferase protein wzm 788968 - 789840 + | polysaccharide ABC transporter, permease protein wzt 789837 - 791168 + | polysaccharide ABC transporter, ATP-binding protein TERM 769 791592 - 791607 + G 90 -2.4 -5.47821 | opp_overlap 791587 CTTAAAAAGGTCCCG CCGGAG AAAG CATCGG TTTTTTTGAATCGGT RHE_CH00755 791286 - 794093 + | putative glycosyl/methyltransferase hybrid protein TERM 770 794391 - 794430 + G 76 -8.4 -4.12902 | gap 1, overlap 794392 794428 ATCCCGGTTTTGGTT CCGAGGTTCCGG-GCGCGG TCA CCGTGCGCTGGATCCCCGA TTTTCAACATCGTTA TERM 771 795034 - 795052 + G 77 -4.4 -4.86731 | TGCTGTTCACAGGGA GCAGGCGC CGA GCCGCTGC TTTTATTTCGACCCA RHE_CH00756 794090 - 795259 + | alpha-glycosyltransferase protein TERM 772 795500 - 795518 + G 91 -9.5 -4.56597 | CGCGTCCATTCGTCG GTGGCCG CGGAT CGGCCGC TTTTTCCGGGCGCGC TERM 773 795680 - 795696 + G 78 -5 -4.75472 | opp_overlap 795671 795670, overlap 795681 AAGCATGGCCGACAT CGCCGG CTCGA CCGGCC TTTTGTTGCTCTCCA TERM 774 796107 - 796141 + G 75 -14.4 -2.78816 | CGGGTGGCGGCAGCA GTGCTCCAACCCTC ACGATTC GAAGGTTGGAGCAC TGTGATCGAAGATGC RHE_CH00757 795240 - 796424 + | glycosyltransferase asnB 796439 - 798280 + | asparagine synthetase (glutamine-hydrolyzing) protein RHE_CH00759 798390 - 798989 + | hypothetical protein RHE_CH00760 799047 - 799955 + | nucleoside-diphosphate-sugar epimerase protein TERM 775 800318 - 800308 - g 71 -8.2 -3.91716 | GGATGCGTTAAACAA GGGC TTT GCCC ATGCGGACGGCGAGA RHE_CH00761 800015 - 800875 + | putative beta-glycosyltransferase protein noeL1 800879 - 801961 + | GDP-mannose 4,6-dehydratase protein nolK 801966 - 802895 + | GDP-L-fucose synthase protein TERM 776 803323 - 803337 + G 76 -10 -3.87815 | GCGAGCGACGCCTGG CGATGC GCT GCATCG TTTCTCAGCCTGCCA exoU 802899 - 803642 + | UDP-hexose transferase protein TERM 777 804519 - 804540 + G 71 -8.1 -3.8709 | GGGTATGTGGCTTTC GGTATATGC GTTC GCATATATC TTTGTCGCCCGATTT TERM 778 804629 - 804647 + G 70 -11.6 -3.14218 | overlap 804627 804626 GGCTGATGATTCCAG CCGCCCCC TCT GGGGTCGG TACTTTTCATGCATC RHE_CH00765 803743 - 804813 + | hypothetical protein TERM 779 805821 - 805807 - g 95 -10 -4.66609 | opp_overlap 805800 TATCCCATGGAAAAA GAAGCG ATG CGCTTC TTCAACCTTTTGGGT RHE_CH00766 804817 - 806148 + | glycosyltransferase TERM 780 806906 - 806938 + G 76 -6.9 -4.42238 | overlap 806909 CTCATTCTTCACAGT CTGTCTCACGTCAAG AGG CGAGGCGTGAGATGG TTTTGCTTCGCCTGG RHE_CH00767 806151 - 806933 + | hypothetical protein TERM 781 807041 - 807055 + G 71 -8.6 -3.86346 | GGCGGGAGCGGAAGC TCATGC GCG GCATGA TTTCTCCGGCAATGA nlpE1 806935 - 807684 + | lipopolysaccharide biosynthesis protein (SAM-dependent methyltransferase protein) lpeA 807701 - 808561 + | lipolysaccharide tri-O-methyl-fucosylation protein (SAM-dependent methyltransferase protein) nlpE2 808567 - 810147 + | lipopolysaccharide biosynthesis protein RHE_CH00771 810297 - 811280 + | putative fatty acid desaturase protein RHE_CH00772 811300 - 812262 + | putative methyltransferase protein RHE_CH00773 812902 - 812222 - | IS66 insertion sequence transposase protein TERM 782 812952 - 812973 + r 100 -10.1 -5.02074 | AGTGCTTTTGCTCAT CCTGCCGAC GTCG GTCGCCAGG TTTTTTGCGGCATCC RHE_CH00774 813295 - 812948 - | insertion sequence transposase protein RHE_CH00775 813453 - 813836 + | insertion sequence transposase protein RHE_CH00776 813833 - 814177 + | insertion sequence transposase protein TERM 783 814242 - 814222 - f 71 -6.8 -4.34771 | GAAAAGGCAGGAAAA CCGGAGCA AATTG TGCTCTGG TAGGCCTCATGACGC RHE_CH00777 814251 - 815843 + | insertion sequence transposase protein RHE_CH00778 817907 - 816315 - | insertion sequence transposase protein TERM 784 817916 - 817936 + r 71 -6.8 -4.34771 | GCGTCATGAGGCCTA CCAGAGCA CAATT TGCTCCGG TTTTCCTGCCTTTTC RHE_CH00779 818325 - 817981 - | insertion sequence transposase protein RHE_CH00780 818705 - 818322 - | insertion sequence transposase protein RHE_CH00781 820168 - 819137 - | hypothetical protein TERM 785 820975 - 820987 + G 70 -10.5 -3.66018 | CTAATCCCGCCGCTT GCGCG GTC CGCGC TTCTTCCCCTAATCG RHE_CH00782 820447 - 821463 + | IS1111A/IS1328/IS1533 insertion sequence transposase protein RHE_CH00783 822400 - 821807 - | hypothetical protein TERM 786 822618 - 822586 - H 79 -9.8 -4.17296 | gap 1, opp_overlap 822590 822615 822615 GGTCACATATAGAAA CGGTGGACG-ACGAC CTTG GTCGTTCGGCCGCCG GCGGCGTGACCCGCG RHE_CH00785 823319 - 824488 + | insertion sequence transposase protein TERM 787 826102 - 826114 + G 74 -9.1 -3.91412 | GCCCGGGGCAGTTCC GCGTC GTC GACGC TTTCTCGCGTATCGT ppx1 825735 - 827024 + | exopolyphosphatase protein TERM 788 827088 - 827059 - g 70 -10.6 -3.54543 | overlap 827045 827060 ACCGATCGCGGGAAA CCGCACCGGCCG CAAGCT CGGCCAGCGCGT CAAGAACAAGAAGAT TERM 789 827087 - 827060 - g 72 -14.1 -2.72511 | overlap 827045 827059 CCGATCGCGGGAAAC CGCACCGGCCG CAAGCT CGGCCAGCGCG TCAAGAACAAGAAGA ftsJ 827033 - 827752 + | cell division protein TERM 790 827917 - 827931 + F 74 -3.4 -4.8543 | TCCTTGGCTCAAGCC CGCACC CTA GGCGTG TTTTTCTGCCCATTG RHE_CH00790 828350 - 829390 + | hypothetical protein RHE_CH00791 829497 - 829880 + | putative lactoylglutathione lyase protein RHE_CH00792 831307 - 829886 - | efflux transporter, permease protein TERM 791 831649 - 831637 - g 76 -10.5 -3.82603 | AATTTTGAAAGAGAA GGCCG AAG CGGCC GTCACTGGAGCAAGC TERM 792 832234 - 832205 - g 78 -12.1 -3.73775 | gap 1, overlap 832190 832189 GCCACCTTCATCAAA GATGGCGCCG-GCG TCG CGCCCGGCGTCACC GCAATGCTGGCGGCC RHE_CH00793 831551 - 832543 + | putative beta-lactamase family protein TERM 793 832599 - 832618 + F 100 -12.1 -4.946 | TGGCACCCATGACGA GCCCGGC GCACAG GCCGGGC TTTTTCCTATTTCCT TERM 794 833898 - 833870 - g 76 -11 -3.76224 | gap 1 CCGGCACCGACGAAA GCCCGGGT-GAGG TCTA CCTCTACCAGGGC CGCTCCTTCAAGGCC guaB 832750 - 834234 + | inositol-5-monophosphate dehydrogenase RHE_CH00795 834237 - 834791 + | hypothetical protein RHE_CH00796 835684 - 834800 - | LysR family transcriptional regulator RHE_CH00797 835810 - 836565 + | dehydrogenase protein TERM 795 836576 - 836617 + F 74 -10.2 -3.62572 | gap 2, opp_overlap 836574 836575 836572, overlap 836581 TGTGAACACAATAGC GG-TTTGCGGATGCCAG-GG CGAG CCGCTGGCATCCGCTTATCC TTTCCGCTAATGCTG TERM 796 836581 - 836611 + F 100 -17.7 -3.60865 | gap 1, opp_overlap 836574 836575 836572, overlap 836576 ACACAATAGCGGTTT GCGGATGCCAG-GG CGAG CCGCTGGCATCCGC TTATCCTTTCCGCTA RHE_CH00798 836669 - 837085 + | hypothetical protein TERM 797 837628 - 837617 - g 83 -7.2 -4.60255 | overlap 837607 837606 837618 837619 ATAATCGCCCAAAAA GGCG TCAG CGCC ATGCGGATGACGGAA RHE_CH00799 837503 - 838144 + | TetR family transcriptional regulator RHE_CH00800 839109 - 838153 - | LysR family transcriptional regulator TERM 798 839232 - 839211 - H 70 -10.9 -3.338 | ATCAAGCAAAGTGAA GGACAGACA CCCC TGCCTGTCC GAGCCGAATTCAGCC RHE_CH00801 839315 - 839614 + | hypothetical protein TERM 799 839593 - 839623 + T 70 -9.7 -3.53224 | TTGGCGCCTGCAGTT CTTCCGCTCCTGC GACGA GTAGGAGCGCGAG TTTCCCCGCAGGGTG TERM 800 839661 - 839696 + T 100 -16.3 -5.10968 | gap 1 ATAGCCCTGCCGCTT GACCCGGTGATCGGCT TTCCC AGCC-ATCGCCGGGTC TTTTTATGTCTTGGT RHE_CH00802 840566 - 839700 - | hypothetical protein TERM 801 840039 - 840051 + g 74 -5.5 -4.43477 | ATTGTCGAAGATGCT GGCTT CCG GAGCC TTTTGCTTCGGTGCG gsh 842038 - 840665 - | glutamate-cysteine ligase protein TERM 802 841817 - 841835 + g 90 -8.8 -4.82901 | overlap 841820 GTTGCCGCCGTCCAG GATCGGCT CCC AGCCGCTC TTTTTCTGCAGGCCG RHE_CH00804 842921 - 842184 - | hypothetical protein RHE_CH00805 844437 - 842938 - | phosphate ABC transporter permease TERM 803 843198 - 843175 - G 81 -13.8 -3.62046 | overlap 843189 CCATTCGCGGAAGAA GCCGACGCCG AAGA CGGCGCCGAC GGCGATATGCGTGGT TERM 804 843529 - 843559 + g 76 -9.6 -4.08216 | opp_overlap 843538 843541 GCCGATGAGCGGCAG CCGGAACAACACCC GCA GGGAGCTGTTGCGG TTTTCGAGACCCTGC TERM 805 844161 - 844119 - G 72 -7.7 -4.12188 | gap 2, opp_overlap 844156, overlap 844120 CGAGGACTTCGAAAA TCGCG-GCGATGACGA-GCGC CTG GCCCATCGTCATGGCGCGCGC ACCGACGGCGGCGCC RHE_CH00806 845009 - 844500 - | MutT/NUDIX family NTP pyrophosphohydrolase TERM 806 844649 - 844659 + g 72 -4 -4.59773 | TGGTGCGTTCACCCT TTTC CTT GAAA TTTTTCGCGATGCCG RHE_CH00807 846263 - 845367 - | LysR family transcriptional regulator TERM 807 845796 - 845771 - G 83 -16.1 -2.91264 | opp_overlap 845783, overlap 845755 CCGCCGAGGCACAGA GCAGCCGGCGC ACCG GCGCCAGCCGC CGGGCGACGAGGCTG TERM 808 846590 - 846621 + G 88 -14.4 -3.7941 | overlap 846582 846582 GCCGTCGCCCTGCCG CGCACCACGGCCGA GGTT TCGGCCGTCATGCG TTATTGTCACCGCTA glcD 846404 - 847843 + | glycolate oxidase subunit D protein glcE 847840 - 849039 + | glycolate oxidase subunit E protein TERM 809 849828 - 849813 - g 73 -8.2 -4.09685 | TCGGATCTTTCAAAA CCCGGC ACCT ACCGGG CGGAGGCGGATCGGC glcF 849291 - 850601 + | glycolate oxidase subunit F protein TERM 810 850634 - 850608 - f 72 -10 -3.66784 | overlap 850609 TTAGGCTGAAGAGAA TGCAGCGGGCCG ATC CGGGCCGCTACC GGGAGGTTGGGCGAT TERM 811 850633 - 850609 - f 76 -13.5 -2.79749 | overlap 850608 TAGGCTGAAGAGAAT GCAGCGGGCCG ATC CGGGCCGCTAC CGGGAGGTTGGGCGA RHE_CH00811 850648 - 851088 + | hypothetical protein TERM 812 851188 - 851146 - T 100 -28.8 -4.96848 | TCGCCCAGACAAAAA GTTAGAGCGGTCCTGCTTTC ATC AAAAGCAGGACCGCTCTAAC GCTGCAGCCGAAATT lpxQ 851885 - 851211 - | lipid A oxidase (involved in formation of 2-aminogluconate) protein TERM 813 851967 - 851984 + r 70 -5.5 -4.42765 | opp_overlap 851967 CTAAGGAAAAGAAAA GGCGC CTCGAACT GCGCC TTTCGTTTTTTCGCA TERM 814 851984 - 851967 - R 86 -5.5 -5.18643 | opp_overlap 851967 CTAAGGAAAAGAAAA GGCGC CTCGAACT GCGCC TTTCGTTTTTTCGCA RHE_CH00813 852700 - 852008 - | hypothetical protein TERM 815 852854 - 852822 - R 79 -14.4 -2.87132 | opp_overlap 852812 852817 852816 TTGCGGCTTCATAGA GCATTTCCGTATTT CTCCC AAACACGGAAATGC CCTACCTCTTTGTTT RHE_CH00814 853687 - 852938 - | hypothetical protein TERM 816 853037 - 853027 - G 76 -8.2 -4.16842 | TGCAGCCGGAAGAAA CGGC GCT GCCG ATCGACCAGGGCGCA tag 853917 - 854546 + | DNA-3-methyladenine glycosylase I protein RHE_CH00816 854543 - 855043 + | hypothetical protein RHE_CH00817 855759 - 855055 - | putative hydrolase, haloacid dehalogenase-like family protein TERM 817 856507 - 856539 + G 70 -10.4 -3.57561 | overlap 856508 CAGGCCTGGCGTATT TCCAAGGCGCTCGG TCTCT CCGAGCGCCGCGGC TTTGCCCGGTTCGAG TERM 818 856508 - 856538 + G 72 -13.9 -2.74322 | overlap 856507 AGGCCTGGCGTATTT CCAAGGCGCTCGG TCTCT CCGAGCGCCGCGG CTTTGCCCGGTTCGA TERM 819 856723 - 856683 - g 72 -11.8 -3.34398 | opp_overlap 856683 856682 856697 856698, overlap 856681 CTTGTCCGGCAAATA TGGTCCCGGC-GCCCCCGGC AAT GGCGAGGGCCGCCGCG-CCA GTTTCGATTTCCCGC RHE_CH00818 855997 - 857046 + | oxidoreductase protein TERM 820 857140 - 857157 + T 76 -6.9 -4.58685 | opp_overlap 857134 ACGCATGAAGGGGCA GCCGCAG TTTA CTGAGGC TTTTTCAGCGGCTTT RHE_CH00819 858980 - 857148 - | hypothetical protein TERM 821 859137 - 859166 + r 77 -12.1 -3.33162 | overlap 859138 ACTTTATCAGCCGAC TGGGAACGCCTGA CAGG TCTGGCGTTCCCC TTCTCACGTAAGATC TERM 822 859138 - 859165 + r 82 -15.6 -2.59683 | overlap 859137 CTTTATCAGCCGACT GGGAACGCCTGA CAGG TCTGGCGTTCCC CTTCTCACGTAAGAT RHE_CH00820 860186 - 859437 - | hypothetical protein TERM 823 861375 - 861387 + G 81 -10.5 -4.18494 | CATGGGCCAGCCGGT GCCGG CGA CCGGC TTTTCGATCGGCGTC hisS 860188 - 861846 + | histidyl-tRNA synthetase TERM 824 862879 - 862895 + G 72 -7.9 -4.12188 | overlap 862880 CCGCTCGTCAATGCG TCGGCGG CGC TCGCCGG TTTTGCCGATGCTGC hisZ 862078 - 863199 + | ATP phosphoribosyltransferase regulatory subunit hisG 863196 - 863891 + | ATP phosphoribosyltransferase catalytic subunit TERM 825 863909 - 863948 + T 100 -21.6 -3.5525 | opp_overlap 863912 863913 863918, overlap 863913 863918 TCGGCCATCAGGCCA CAAGCAAAACCCGCCGTC GGAT GACGGCGGGTTTTGTATG TTTGGGAGGATGTCT TERM 826 863945 - 863912 - T 100 -19.7 -3.34043 | opp_overlap 863909 863913 863918, overlap 863913 863918 GCCATCAGGCCACAA GCAAAACCCGCCGTC GGAT GACGGCGGGTTTTGT ATGTTTGGGAGGATG TERM 827 863913 - 863944 + T 100 -23.2 -3.24411 | opp_overlap 863912 863913 863918, overlap 863909 863918 CCATCAGGCCACAAG CAAAACCCGCCGTC GGAT GACGGCGGGTTTTG TATGTTTGGGAGGAT TERM 828 863944 - 863913 - T 100 -23.2 -2.60212 | opp_overlap 863913 863909 863918, overlap 863912 863918 CCATCAGGCCACAAG CAAAACCCGCCGTC GGAT GACGGCGGGTTTTG TATGTTTGGGAGGAT TERM 829 863918 - 863939 + T 100 -17.3 -4.74013 | opp_overlap 863913 863912 863918, overlap 863913 863909 AGGCCACAAGCAAAA CCCGCCGTC GGAT GACGGCGGG TTTTGTATGTTTGGG TERM 830 863939 - 863918 - T 100 -17.3 -4.49389 | opp_overlap 863918 863913 863909, overlap 863913 863912 AGGCCACAAGCAAAA CCCGCCGTC GGAT GACGGCGGG TTTTGTATGTTTGGG RHE_CH00824 864407 - 863970 - | hypothetical protein gstch3 864620 - 865330 + | glutathione S-transferase protein RHE_CH00826 866013 - 865609 - | hypothetical protein TERM 831 866619 - 866600 - g 100 -12.8 -5.28942 | opp_overlap 866600 GACGGCAAAGAAAAA GGGCGACC CGAG GGCCGCCC TTCCTGTTCCGGATG RHE_CH00827 866270 - 866704 + | hypothetical protein TERM 832 866741 - 866765 + T 73 -12.9 -2.64616 | opp_overlap 866748 TTTCATGGACGATGC TGTGAAAGGCC TTT GGCCTATCACA TCATGTCCATACCGC groEL 868398 - 866761 - | chaperonin GroEL TERM 833 867027 - 867079 + g 76 -13.4 -3.15579 | gap 1 TCGAGGCTTCGTCGC CAGCGTTCTCAGCGATCTGGCGGGC CGGA GCCTG-CAGAGCGCGGCGAACGATG TTGATGCCGGCTTCC TERM 834 868199 - 868220 + g 74 -9.5 -3.90112 | TGGGCGCCCATGTTT TCGAACTTG TCTT CGAGTTCGA TTTCCTTGGCGACCG groES 868765 - 868469 - | co-chaperonin GroES TERM 835 869445 - 869477 + G 78 -7 -4.56597 | GTTGAGCGCCGGCCG GCCGGCG-AGGCGCAG TCG CT-CGTCTGCACCGGC TTTTTCGACGACGAA RHE_CH00830 869088 - 869936 + | putative hydrolase, haloacid dehalogenase-like family protein ribF 869951 - 870934 + | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 836 870984 - 870970 - f 76 -7 -4.62069 | TTTCGAGCGCAAAAA CCGCGG GCG CCGGGG GATCGCATCGCACAG TERM 837 871088 - 871127 + F 100 -15.1 -4.11484 | gap 3, opp_overlap 871081, overlap 871103 GATACGAATTATCGG CCCGG-CCTTCCGCGCGCGC TAA GCG-GC-CGGGAGGTCCGGG TTTTCGGCGCTTGGA TERM 838 871787 - 871747 - g 73 -11.2 -3.57263 | gap 2, opp_overlap 871750 871772, overlap 871774 ATTTCCACGCGGAAA GCCGCATCGCCGGCGAGCTC TTG AAGATCGCC-GCAA-GCGGC CAGCTCTATCGCGGC TERM 839 871965 - 871996 + G 70 -11.6 -3.15579 | gap 1, overlap 871967 TGGACGACGACGCCC TGGACGATC-CCCGG CAA CCGGGCGATCGCCTA TTCCTCGCGCGTTGC TERM 840 871967 - 871994 + G 70 -12 -3.13899 | gap 1, overlap 871965 GACGACGACGCCCTG GACGATC-CCCGG CAA CCGGGCGATCGCC TATTCCTCGCGCGTT TERM 841 873138 - 873098 - g 93 -19.1 -3.28712 | CCGCGCCCCTTATAA CGCCGTCCTCACCCATGGT TTC ACCATGGACGAGAAGGGCG AGAAGATGTCGAAGT ileS 871218 - 874124 + | isoleucyl-tRNA synthetase TERM 842 874529 - 874494 - g 76 -8.3 -4.128 | gap 1, overlap 874490 AGGGGCAGAGAGAAA CCCTCGTTGC-CCCGC AGCAG ACGGTTGCAACGAAGG ACAATCCGCAGTGGC TERM 843 874596 - 874563 - g 76 -10.9 -3.72695 | overlap 874564 AGTCGCCGGAGGAAA CCCGCGCCCGCCTCG TTTC CGAGGCCGACGCAAA CTCCGACAATCCGAA RHE_CH00833 874256 - 874885 + | hypothetical protein codAch1 875426 - 874995 - | cytosine deaminase protein TERM 844 875376 - 875345 - G 70 -10 -3.57144 | opp_overlap 875353 TTCCCGAGCGCGAAA CGGCGATACCGTCG ATGA CGACGACGGCGCCG ATCGGTACTTCGCCG TERM 845 875651 - 875624 - g 70 -10.5 -3.57561 | CGCCAAGCCGGCAAA GGCTGCAACCG CGCCCC CGGCTGCGGCC GAAACCGAGAGCGAG TERM 846 876710 - 876692 - g 70 -7.4 -4.07568 | GCCGCTCGGCGAAAA GGCAGC GGCCAAG GCTGCC AAGAATGCGCAGGCC TERM 847 876755 - 876716 - g 100 -17.8 -3.62522 | gap 1 CAAGGCTGCCAAGAA TGC-GCAGGCCGCACGCCG GCG CGGCGAGCAGCCAGCGGCA AAGACCAATGCTTTC TERM 848 877173 - 877195 + G 76 -9 -4.07885 | opp_overlap 877150, overlap 877153 877176 GGCGAGGGGCGCTCC GAGCGCCCGC GTG GCGAGCGATC TTTTGCGGGCAAGTC rluB 875523 - 877409 + | pseudouridylate synthase, subunit B protein TERM 849 877533 - 877543 + G 78 -5.4 -4.72272 | CGTCGACGGCACCCG GATC CTC GATC TTTTTGCTGGAACCG TERM 850 877823 - 877771 - g 85 -14.7 -3.59979 | CCGCCCTATGGCAAA GGTCTCGGCGAGAAGGCAATGGCGG CGG CCGCCGTTGGCGGCTGGCTGAGACC GGGTGCGATAGCGGT RHE_CH00836 877390 - 877950 + | putative methylase protein RHE_CH00837 877964 - 878845 + | hypothetical protein RHE_CH00838 879322 - 878834 - | hypothetical protein RHE_CH00839 879697 - 879326 - | putative glyoxalase protein kefB 881527 - 879809 - | glutathione-regulated potassium-efflux transporter protein TERM 851 879975 - 879919 - G 73 -11.4 -3.63744 | gap 1, overlap 879917 879920 879922 CCGGGTGGGAAAACA GCATGTCGCGGC-CGGCCTGCAGCCCT TCGG AGACCTGCAGGGCGAGCCGCGCCTCGT CGCGCTTGCGGATAT TERM 852 879974 - 879920 - G 75 -14.9 -2.78032 | gap 1, overlap 879917 879919 879922 CGGGTGGGAAAACAG CATGTCGCGGC-CGGCCTGCAGCCCT TCGG AGACCTGCAGGGCGAGCCGCGCCTCG TCGCGCTTGCGGATA TERM 853 879972 - 879922 - G 74 -13.9 -2.93623 | gap 1, overlap 879917 879920 879919 GGTGGGAAAACAGCA TGTCGCGGC-CGGCCTGCAGCCCT TCGG AGACCTGCAGGGCGAGCCGCGCCT CGTCGCGCTTGCGGA TERM 854 881331 - 881303 - G 74 -5.8 -4.43859 | opp_overlap 881305, overlap 881306 GAGAACTTCAGAAAA CCAGGCGAGCGC GGTCA GCGCCAGCCCTG TTACCACCACCTGCG TERM 855 881899 - 881915 + G 83 -8 -4.66163 | opp_overlap 881899 881909 GTCGAGGGAACGGAA TCGTCG GAAAG CGACGA TTTTTCGCTCCGCGT TERM 856 882463 - 882479 + G 71 -9.3 -3.73402 | overlap 882470 ACCGTCGTCTTCGAT CCGCGCG TCG CCCGCGG TTTCGTCGGCCATAT pmbA 881743 - 883089 + | modulator of DNA gyrase protein TERM 857 883176 - 883205 + G 78 -6.3 -4.57837 | gap 1, opp_overlap 883184, overlap 883176 883177 TTGATCGCCGATGCT G-CGAAGGAGGCCG GCG CGGTCGCCTACGGC TTTTTCAACCAGTCT RHE_CH00842 883119 - 883928 + | inositol monophosphatase protein RHE_CH00843 883991 - 884239 + | hypothetical protein TERM 858 884260 - 884224 - f 100 -16.5 -4.26076 | overlap 884240 CGATCCGCAGCAAAA GGCCAGCGGCAACTGAC CTC GGCAGCCGCCGCCAGCC GAGCGGGCCCTCGTG kdtA 884397 - 885716 + | 3-deoxy-D-manno-octulosonic-acid transferase TERM 859 886043 - 886064 + G 91 -9.4 -4.57073 | CGCTGAATTTTCTGT GCCGGTGA CCGACC TCGCCGGC TTTTTCGCAAGGCTG TERM 860 886124 - 886151 + G 76 -9.1 -4.05788 | gap 1, opp_overlap 886124 886121, overlap 886143 CTCCAGCGACAATGA GCGCTCCATCCG CCAGA CGGC-GGAGCGC TTTGGTTTCGCCCGC TERM 861 886217 - 886235 + G 72 -12.4 -3.32844 | opp_overlap 886195, overlap 886201 CGGCGTCAAGCCGGA GCCGGGCA TGG TGCTCGGC TTCTGCGCTGCGACC RHE_CH00845 885726 - 886448 + | phosphoglycolate phosphatase protein TERM 862 887329 - 887299 - g 85 -15.5 -3.53012 | overlap 887265 CGCGCGGTGCCGAAA TCGCGGTCGCCAA GACCT TCGGCGACCACGA GCACCTGACCGAGGA lpxK 886539 - 887579 + | tetraacyldisaccharide 4'-kinase RHE_CH00847 887806 - 887576 - | hypothetical protein TERM 863 887856 - 887869 + r 85 -4.5 -5.1925 | gap 1, opp_overlap 887855 887856, overlap 887848 887847 887847 CATACTCCCGCAAAG GC-GGC TTT GCCAGC TTTTTTAGCTTCTGC mutL 889706 - 887874 - | DNA mismatch repair protein TERM 864 888600 - 888589 - G 83 -7.2 -4.56597 | GGCCGTTCGGAAAAA GCCG GTGC CGGC TGGTAGGGGCGGGAA TERM 865 890449 - 890461 + G 71 -5.5 -4.38154 | overlap 890446 CCTCACCTATGTCGC GGTGA ACC TCGCC TTTTGTGAGAAATAT RHE_CH00849 889889 - 891619 + | two-component sensor histidine kinase protein TERM 866 891646 - 891656 + F 76 -6.8 -4.63218 | opp_overlap 891633, overlap 891634 891633 891642 ATGGCCGTCCTGTCG CGAC GGC GTCG TTTTCTTGCAAGAGC RHE_CH00850 891741 - 893150 + | putative sensory box/GGDEF family protein TERM 867 893286 - 893259 - T 100 -15.6 -4.82901 | GTGCGGTCAGAAAAA GCAATGGCGCCC CTAG GAGCGCCATCGC CTACGCTATACTACC RHE_CH00851 893916 - 893311 - | hypothetical protein TERM 868 894109 - 894089 - R 100 -11.8 -4.81249 | opp_overlap 894089 CCCCAAACGGAAAAA GGCGCCCC GCTCG GGAGCGCC TTGAATGGCGGCTGG RHE_CH00852 895024 - 894137 - | gluconolactonase protein (calcium-binding regucalcin-like) kdgA 895661 - 895029 - | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase dgoK 896592 - 895675 - | 2-dehydro-3-deoxygalactonokinase protein TERM 869 895899 - 895884 - G 74 -11.8 -3.53444 | TCAGCGTGCCGGAAA GCCGCG CCTG CGCGGC CGCGGCGGAGATCCC TERM 870 895977 - 896022 + g 70 -10.3 -3.62046 | gap 1, opp_overlap 895978 895979, overlap 895979 GTGCGGGATGCGCAA AGGCC-GCCGATACGGCCGCCT CGA AGGCAGCCGCATCCGCCGGCTG TTGTTCGGCACCTGA TERM 871 896020 - 895978 - G 91 -16.2 -3.57144 | opp_overlap 895977 895979, overlap 895979 TGCGGGATGCGCAAA GGCCGCCGATACGGCCGCCT CGA AGGCAGCCGCATCCGCCGGC TGTTGTTCGGCACCT TERM 872 896020 - 895979 - G 90 -19.5 -2.74144 | gap 1, opp_overlap 895977 895979, overlap 895978 GCGGGATGCGCAAAG GCCGCC-GATACGGCCGCCT CGA AGGCAGCCGCATCCGCCGGC TGTTGTTCGGCACCT TERM 873 895979 - 896020 + g 84 -15.1 -3.38991 | gap 1, opp_overlap 895978 895979, overlap 895977 GCGGGATGCGCAAAG GCC-GCCGATACGGCCGCCT CGA AGGCAGCCGCATCCGCCGGC TGTTGTTCGGCACCT fabG1 897362 - 896592 - | 3-oxoacyl-(acyl carrier protein) reductase protein RHE_CH00856 897493 - 898287 + | IclR family transcriptional regulator RHE_CH00857 898497 - 899243 + | LuxR family transcriptional regulator TERM 874 899425 - 899477 + G 100 -17.9 -3.81879 | opp_overlap 899410 899425, overlap 899473 GGCGCGGCCGACACA CCGCTGCCCGACGCCGAAG-CCG CTTCTCTCC CGGTCTTCGGCGTCG-GTGGCGG TTGTTGCCTTTTGGC TERM 875 899477 - 899425 - g 74 -13.5 -2.87132 | opp_overlap 899425 899473, overlap 899410 GGCGCGGCCGACACA CCGCTGCCCGACGCCGAAG-CCG CTTCTCTCC CGGTCTTCGGCGTCG-GTGGCGG TTGTTGCCTTTTGGC TERM 876 899604 - 899656 + G 71 -12.8 -3.09933 | opp_overlap 899605, overlap 899629 TTCTCGGGGAGAGAG ACCGTTGCGGCCATCAGGGC GAAATGCCCGGCG GACTTGATGGCCGCAACGGA TTCGCTGAATTCCCG TERM 877 899655 - 899605 - g 75 -14.1 -2.98823 | opp_overlap 899604 899629 TCTCGGGGAGAGAGA CCGTTGCGGCCATCAGGGC GAAATGCCCGGCG GACTTGATGGCCGCAACGG ATTCGCTGAATTCCC RHE_CH00858 899391 - 899861 + | hypothetical protein TERM 878 900989 - 901016 + G 72 -4 -4.66609 | gap 1, overlap 900979 900992 900998 GAGCAGCTCGCCGGC CAGTC-CCAGCGC CCG GCGCCGGCGATCG TTTTTGAATGACGTC RHE_CH00859 899858 - 901027 + | ATP-binding protein (Mrp protein-like) corAch 901467 - 902453 + | magnesium/cobalt transporter protein TERM 879 903518 - 903530 + G 72 -4.1 -4.60487 | opp_overlap 903488, overlap 903514 903521 CTTCTTGCCGTCGGT CAACG CCG TGTTG TTTTTCGGCGTCATC TERM 880 903612 - 903637 + G 73 -11.2 -3.67976 | ATCTCCGTCACCGGC GCCATGGTCG TCACCT CGATCATGGC TTTCGAATTCGTCCG kupch1 902472 - 904370 + | potassium transporter protein TERM 881 904418 - 904396 - f 72 -10.5 -3.53563 | AGACCCCGCCCCAAA CCCCTCCTC ACAAG GGGGAGGGG CTTAACCTGCCGCAC TERM 882 904474 - 904523 + F 83 -11.4 -3.86897 | gap 1 GGGCGTAAGTGCGAC GGTGCCTCTCCAAGCCCCTCCCC CTTGT GGGGAGGAG-TTGGGGAGGGGAC TTTGTAAGGGATGCG TERM 883 905051 - 905034 - g 76 -8.3 -4.24342 | CGCGGCACGAAGAAA GGCCGCG TCGT CGCGGTC GAGAAGATGAAGCCG RHE_CH00862 904671 - 905846 + | putative cell wall hydrolase protein involved in spore germination atpI 906117 - 906455 + | ATP synthase protein, subunit I TERM 884 906471 - 906456 - f 78 -6 -4.74611 | GATGACAAAAAATAA GGGCCG GTCC CGGTCC AGTGCAATGACCCCG TERM 885 906808 - 906832 + G 76 -8.5 -4.14633 | CATGTTCGTGCTGAC GGCGAACCTGC TCG GCATGTTCCCC TATTTTTTCACGATC TERM 886 907117 - 907142 + G 70 -10.3 -3.66018 | CTCGCTTGGAGCCCT CGGTGCCGTCG GTGT CGGCGGAGCCG TTCTTCCCCTCATCA atpB 906518 - 907270 + | F0F1 ATP synthase subunit A atpE 907339 - 907566 + | F0F1 ATP synthase subunit C TERM 887 907614 - 907581 - f 87 -17.5 -2.87683 | opp_overlap 907582 ATATCGGCGGATAGA TGGATCACGGCCTGC GACC GCAAGCCGTGATCCT TTGCATTTGCAGTCC TERM 888 907582 - 907613 + F 100 -18.8 -3.85165 | opp_overlap 907581 TATCGGCGGATAGAT GGATCACGGCCTGC GACC GCAAGCCGTGATCC TTTGCATTTGCAGTC atpF1 907644 - 908267 + | F0F1 ATP synthase subunit B' atpF2 908271 - 908762 + | F0F1 ATP synthase subunit B TERM 889 908781 - 908813 + T 86 -14.2 -3.69395 | opp_overlap 908782 908788, overlap 908783 908788 GTAGCGTATAGAATG AGGAAAAGGCCGGG CATGT CCCGGCCTTTTCTG TTGTTGAATACTCGA TERM 890 908812 - 908782 - T 83 -15.5 -2.89298 | opp_overlap 908781 908783 908788, overlap 908788 TAGCGTATAGAATGA GGAAAAGGCCGGG CATGT CCCGGCCTTTTCT GTTGTTGAATACTCG TERM 891 908783 - 908811 + T 100 -19 -3.42702 | opp_overlap 908782 908788, overlap 908781 908788 AGCGTATAGAATGAG GAAAAGGCCGGG CATGT CCCGGCCTTTTC TGTTGTTGAATACTC TERM 892 908806 - 908788 - T 95 -13.1 -4.38129 | opp_overlap 908783 908781 908788, overlap 908782 ATAGAATGAGGAAAA GGCCGGG CATGT CCCGGCC TTTTCTGTTGTTGAA TERM 893 908788 - 908806 + T 100 -13.1 -4.79752 | opp_overlap 908788 908782, overlap 908783 908781 ATAGAATGAGGAAAA GGCCGGG CATGT CCCGGCC TTTTCTGTTGTTGAA TERM 894 908917 - 908892 - T 70 -11.9 -2.70932 | gap 1 CGGGGGTCCGAAGGA CGGGTCGAGACC CGT GG-CTCGACCCA GGTCGGCGCCCGTAG TERM 895 909094 - 909117 + T 73 -11.8 -2.9039 | gap 1, overlap 909080 CGTGCGGCCCATCCA C-CTTCTCCCC GGC GGGGAGAAGAG TATATGCCGTGGTCT rnhB 909890 - 909201 - | ribonuclease HII TERM 896 909917 - 909868 - G 88 -16.7 -3.36131 | opp_overlap 909868 AAAAGCAGGGGAGAA TCGGGT-GGCGTGCGACGTTTCA TGCGGC TGAACC-TCGCACGCCAACCCGA TTTCCCGCAAGTCCC TERM 897 909868 - 909917 + g 91 -16.7 -3.53811 | opp_overlap 909868 AAAAGCAGGGGAGAA TCGGGT-GGCGTGCGACGTTTCA TGCGGC TGAACC-TCGCACGCCAACCCGA TTTCCCGCAAGTCCC RHE_CH00869 911215 - 910058 - | hypothetical protein TERM 898 911483 - 911518 + G 78 -11.8 -3.75629 | gap 1 TCACGGCTCGCGCGA CGGCACCTCGCGG-GTC GCC GACGCCGCTGGCTGCCG TTTCCATTCACAATG RHE_CH00870 911355 - 911873 + | putative glycosyltransferase protein TERM 899 912045 - 912077 + F 100 -14.1 -4.57353 | GACACACAGCTTAGT CCCTTCCCCCTGTGG GTC CCATGTGGGGAGGGG TTTTCTATAATAGGC TERM 900 912266 - 912233 - f 76 -6.8 -4.57073 | gap 2, opp_overlap 912224, overlap 912234 CAGGTCGGCGAAAAA TCTCCTCTTCTGCCGG GTTT CCGGC-GAA-AGGAGG TGCGTCATGCCACTC TERM 901 912265 - 912234 - f 70 -10.3 -3.33922 | gap 2, opp_overlap 912224, overlap 912233 AGGTCGGCGAAAAAT CTCCTCTTCTGCCGG GTTT CCGGC-GAA-AGGAG GTGCGTCATGCCACT RHE_CH00871 912273 - 912608 + | hypothetical protein moaB 913240 - 912689 - | molybdenum cofactor biosynthesis protein TERM 902 913032 - 913065 + g 76 -6.8 -4.43189 | gap 2 ACGACATCGATCTCA TC-CCGCTC-GGTCCA GGCT TTGACCTGAGCGGCGA TTTTCTCCCGTTCGT TERM 903 913204 - 913219 + g 73 -3.2 -4.72272 | GAATCGCAATCCCGA CGGC GATGAAGG GCCG TTTTTCGTCCAAACC ispE 914124 - 913240 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase protein TERM 904 913329 - 913304 - G 78 -14.7 -3.01712 | gap 1, overlap 913282 913279 CGCGCCTCGTGAAGA GCCGCCGCCGCA TCT CGCG-CGGCGGC CATGTCGGCAAAGAT RHE_CH00874 915969 - 914137 - | hypothetical protein TERM 905 914892 - 914908 + g 70 -7.9 -4.08692 | GCTGCAGCTCGGAGA TGCGCCG CAT CGGCGAA TTTTCCGGCACCTTC ispB 917141 - 916101 - | octaprenyl-diphosphate synthase protein RHE_CH00876 917226 - 917453 + | hypothetical protein RHE_CH00877 917551 - 918258 + | putative methyltransferase protein mntH 919588 - 918248 - | manganese transport protein MntH TERM 906 919078 - 919058 - G 73 -13.3 -3.21416 | opp_overlap 919056 CAGCGCGATGATGAA GGCTTCCAC CCA GCGGAAGCC GAGTTTCTGCAGGAA sohB 919771 - 920631 + | protease protein RHE_CH00880 920650 - 920841 + | hypothetical protein glyQ 921168 - 922124 + | glycyl-tRNA synthetase subunit alpha TERM 907 922171 - 922132 - g 89 -12.9 -4.21194 | gap 1, overlap 922115 CGGCATGACGCAAAA GCCT-GCCAGCCGTATAG TCCAT CTCAACGGCTGGCCAGGC ACCGGGAAGCTGACG RHE_CH00882 922121 - 922672 + | hypothetical protein RHE_CH00883 922734 - 923285 + | hypothetical protein aroA 923481 - 924743 + | 3-phosphoshikimate 1-carboxyvinyltransferase protein TERM 908 924830 - 924845 + G 74 -11.8 -3.53224 | GCTGCTCTTGTTAGT GGCCGC CCCG GCGGCC TTTGCCGCCGAGGTG TERM 909 925517 - 925527 + G 72 -2.4 -4.76312 | CATCGGCTTCGGCGG CCTG ATC CTGG TTTTTGCCTATTATC TERM 910 926171 - 926201 + G 71 -9 -3.70863 | overlap 926170 926198 CGGCGTTTTCGTGGG CGTCAGCATCCTGG CGA TTATGGTGCTGACG TTTGCCTCGTCTCTG TERM 911 926573 - 926584 + G 70 -7.2 -3.99592 | opp_overlap 926557, overlap 926567 CGGCAGCTTCTCCGA CCGC GTCG GCGG TTTCTCCTCGTCGAT RHE_CH00885 924783 - 926714 + | hypothetical protein TERM 912 927230 - 927210 - g 75 -11.8 -3.53811 | CCGATCGTCGTCAAA GCCGACGG ACTGG CCGCCGGC AAGGGCGTGACGGTT TERM 913 927285 - 927335 + G 90 -18.2 -2.87132 | GCCGCGGTCGATGAT TGCTTCGAGGGCGCCTATGGCGCC GCC GGCGCCGAAGTCGTCGTCGAAGCC TATCTCGAGGGGGAG TERM 914 927545 - 927578 + G 72 -3.7 -4.57073 | overlap 927543 927549 GCCGACGATCCGTGG CATGGCCGAGAGCGG TTAT CCCTTCTCCGGCGTG TTTTTCGCCGGCCTG purD 926781 - 928064 + | phosphoribosylamine--glycine ligase RHE_CH00887 928158 - 928619 + | hypothetical protein TERM 915 928733 - 928775 + F 81 -10.7 -4.07568 | gap 1, opp_overlap 928741, overlap 928737 GGGTTCCACCGCGGT GGAGCGAATGCACCCTCG AAGAGAAG CGGGGGTGCATTC-CTGC TTTTGAGCGCCGGCA TERM 916 928737 - 928772 + F 71 -11.2 -3.08032 | opp_overlap 928741, overlap 928733 TCCACCGCGGTGGAG CGAATGCACCCTCG AAGAGAAG CGGGGGTGCATTCC TGCTTTTGAGCGCCG TERM 917 930427 - 930451 + G 76 -8.4 -4.15565 | CCGGCGTCGAGGCGG CCCGGGCCGG CGAAT CCGGCAAGGG TTTTGCCGTCGTCGC mcpV2 928944 - 930869 + | methyl-accepting chemotaxis protein TERM 918 930969 - 930992 + T 89 -17.4 -3.02211 | opp_overlap 930966 930963, overlap 930964 GCACCAAATTCATAG CGGCCGTCGG TTCT CCGGCGGCCG TGTCGTTTGGGGTTA RHE_CH00889 931493 - 931005 - | hypothetical protein glyS 933849 - 931735 - | glycyl-tRNA synthetase subunit beta TERM 919 934630 - 934614 - g 70 -8 -4.09864 | AGGCATTGCCGAAAA TGCCGA TCTGC TCGGCA GGCTGCGCGCCCATA TERM 920 935758 - 935740 - g 70 -10.2 -3.62597 | CGCACCTTCGAACAA TGCGCCGG CTT CCTGCGCA TTCCGAACGGTAAGG TERM 921 935933 - 935920 - g 72 -2.3 -4.7497 | overlap 935921 TTCATTGATGAAAAA TTCGG CCTG CCGAC GGTCAAGGACATCAT TERM 922 935988 - 935964 - g 100 -14.9 -4.19238 | CGCCGAATTGGAAAA GCCCGGCCGCG ACC CGCGTCCGAGC TTCAAGACCGCGACC RHE_CH00891 934096 - 936405 + | transcriptional accessory protein TERM 923 937536 - 937557 + G 78 -12.3 -3.72576 | gap 1 TGCACTATGCCTATA CGCT-GCGCC ATT GGCGCGAGCG TTTCGTGGCGCGCAA cfa 936539 - 937798 + | cyclopropane-fatty-acyl-phospholipid synthase protein TERM 924 938302 - 938325 + G 100 -11.6 -5.09895 | CCGCCCGTTGGCTCG GCCTGCCGCC GCAG GGCGGCGCGC TTTTTTCCCTCGATA RHE_CH00893 937833 - 938414 + | phosphoglycerate mutase protein TERM 925 938675 - 938697 + F 84 -6.9 -4.89729 | opp_overlap 938670 938669, overlap 938679 CACGATAAATGCAGC CATCGCCGC CCTCC GCGGCTGTG TTTTTGCGTTTTCTG RHE_CH00894 938723 - 939535 + | hypothetical protein TERM 926 939867 - 939877 + G 76 -6.8 -4.46493 | overlap 939854 TTCCGGCAGCCTGCT GGTG TCT CACC TTTTCCTCTATTTCA TERM 927 939955 - 939933 - g 72 -12.1 -3.35679 | CGGCTGCACCTATAA CGATCTCGT CGACC ACGAGATCG ACATGGAAGTGGCGC ubiA 939652 - 940611 + | prenyltransferase TERM 928 940638 - 940655 + T 86 -14.1 -3.66803 | opp_overlap 940638 CGTGAAACGACAAAA CCCGGCG CGGG CGCCGGG TTTCCAATGTTCGCG TERM 929 940655 - 940638 - T 100 -14.1 -4.61566 | opp_overlap 940638 CGTGAAACGACAAAA CCCGGCG CGGG CGCCGGG TTTCCAATGTTCGCG RHE_CH00896 941260 - 940694 - | hypothetical protein TERM 930 944230 - 944217 - g 76 -8.1 -4.13654 | overlap 944211 CCGGTAAAGGACAAA GCGTC GAAG GACGC GACCGCCGAGGTGGA RHE_CH00897 941562 - 944894 + | hypothetical protein RHE_CH00898 946441 - 945008 - | FAD-dependent oxidoreductase protein TERM 931 946170 - 946212 + g 71 -13.2 -3.05343 | opp_overlap 946165 AGCGACAGGATGATG TCGGACTCGCCGGCGCGCGG CGT CTGGCCGCCGACGAGGCCGG TATTGCCGGTCTGCG RHE_CH00899 947479 - 946469 - | translation factor sua5 protein RHE_CH00900 948126 - 947518 - | hypothetical protein TERM 932 947933 - 947957 + g 77 -12.7 -3.63922 | overlap 947935 TGATGCGTCTTCTCG CCGGCCGCCTG CAG CTTGCGGCCGG TCTTTTCGGCGACCT TERM 933 947935 - 947959 + g 78 -9.9 -4.08216 | overlap 947933 ATGCGTCTTCTCGCC GGCCGCCTGCA GCT TGCGGCCGGTC TTTTCGGCGACCTCG TERM 934 948941 - 948921 - g 83 -9.7 -4.3898 | opp_overlap 948937, overlap 948923 ACGATTTCGACAAAA CCGGCTTCA ACC TGAAGCCCG TCCACTGCGAGAGCG TERM 935 949637 - 949627 - g 73 -6.8 -4.2558 | GATCGTCGAGGAAAA TGCC TTC GGCA TCCACTCGCCCGCCT RHE_CH00901 948530 - 949774 + | dioxygenase protein TERM 936 949859 - 949841 - f 72 -3.7 -4.81851 | overlap 949843 ATCCAAACCGAAAAA GTGGCCG GTTTT CAGCCGC TTGGAACCATTCGGC TERM 937 949960 - 949949 - g 84 -2.2 -5.26119 | overlap 949951 GGCTGAAAAACAAAA TCGC GACC GCAA TTCTCACTGCCGCCG RHE_CH00902 949927 - 950382 + | hypothetical protein RHE_CH00903 950645 - 951058 + | hypothetical protein TERM 938 951220 - 951178 - T 70 -11.9 -2.52676 | gap 1 CATGGGTTCAAGCCA CGTCGCC-TCGCGCCAGCCG CTAC CGGCCGTCGCGCCGACGACA GCACGTTCCAGCCCC RHE_CH00904 952437 - 951442 - | magnesium/cobalt transporter CorA RHE_CH00905 952645 - 954426 + | acyl-CoA dehydrogenase protein RHE_CH00906 954456 - 955208 + | enoyl-CoA hydratase RHE_CH00907 956262 - 955258 - | hypothetical protein TERM 939 955661 - 955628 - G 71 -13.7 -2.64726 | opp_overlap 955653, overlap 955627 GTCGACAAGACGAAC GCGGCCCAGAGCGCC ATTC GGCGGTCGGCGCCGC CGCGGGCGGACCAAT RHE_CH00908 957159 - 956341 - | short chain dehydrogenase RHE_CH00909 957245 - 957694 + | putative transcriptional regulator protein RHE_CH00910 958996 - 957746 - | RNA-methyltransferase protein TERM 940 958192 - 958142 - G 72 -7.4 -4.18494 | CAGCCTGAGCGAAAA CGTGCCGGCGCCGGCAAAGAGATC GGC GATCCGTTTGGCCTTGCCGGCATG GGCAAGCACCAGCTC tlyA 959739 - 958993 - | hemolysin protein TERM 941 960138 - 960111 - g 70 -10.4 -3.64703 | TTTCGTCTATTCAAA GGCGACGGCGTC GGCG GCCGCCTCCGCC GAGCAGGAAAAATCG mcpU 960013 - 961956 + | methyl-accepting chemotaxis protein TERM 942 961986 - 962008 + T 95 -12.7 -4.37886 | opp_overlap 961984 GAACGTTATATGAGG GGCGGTGCA ACGGA TGCGCCGCC TTTTATCGAGAGTAC dxs 964091 - 962175 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 943 963626 - 963670 + g 85 -10.6 -4.38712 | gap 1 CATAGGCCATGCCGG CCGA-CATCGCCCCGTCGCCG ATCA CGGCGATGACGCGGCGGTCGG TTTTCTCGAGATCGG RHE_CH00914 965263 - 964340 - | hypothetical protein TERM 944 965155 - 965114 - G 76 -12.7 -3.46509 | overlap 965108 GTCGAAGAAGATGAA CGGCCCGACCAGCCGCCGC TGCC GCGTCGGCAGCGCGCGCCG CACCTGGAAGCCGCC RHE_CH00915 965323 - 966036 + | putative oxidoreductase protein RHE_CH00916 966441 - 966190 - | exodeoxyribonuclease VII small subunit RHE_CH00917 967379 - 966444 - | deacetylase protein RHE_CH00918 967568 - 967969 + | putative thioesterase protein matR 968627 - 967977 - | AsnC/GntR family transcriptional regulator TERM 945 969698 - 969708 + G 73 -8.2 -4.09864 | overlap 969704 TTCGTGACGCTGTCG CCCG TCC CGGG TTTTGCCCGCTGGCT matA 968786 - 970210 + | malonyl-CoA decarboxylase protein TERM 946 971330 - 971306 - g 73 -7 -4.37886 | opp_overlap 971306 GCATGCCGGAGAAAA CCGCGGCCGA ATTCA CCGGCGACGG CTTCTTCATCAGCGG matB 970231 - 971721 + | malonyl-CoA synthase matC 971815 - 973164 + | dicarboxylate-carrier protein TERM 947 974276 - 974301 + G 76 -11.1 -3.78953 | gap 1, overlap 974277 GTCGAGCCGATGGTG GCGACGCCGCTC AAC GAGCGGCG-CGA TTTGCTGATGCAGCT TERM 948 974277 - 974300 + G 77 -14.6 -2.87051 | gap 1, overlap 974276 TCGAGCCGATGGTGG CGACGCCGCTC AAC GAGCGGCG-CG ATTTGCTGATGCAGC RHE_CH00923 973433 - 974497 + | LuxR family transcriptional regulator ectC 974933 - 974547 - | L-ectoine synthase RHE_CH00925 975113 - 975997 + | LysR family transcriptional regulator RHE_CH00926 976568 - 976098 - | hypothetical protein TERM 949 976197 - 976215 + g 71 -5.9 -4.28548 | overlap 976199 CCATAATGCACCAGC TACCGCC CTCGA GGCGGTC TTTTCATGGGTCGAT TERM 950 976487 - 976471 - G 73 -11.5 -3.61398 | overlap 976437 CCTTTCCCCGAAGAA CGGCCGC GTG ACGGCCG CAGTCCAGACAAAAT TERM 951 976534 - 976502 - G 91 -9.2 -4.54047 | overlap 976504 GCAGTCCAGACAAAA TACTCTGCGCTG GAACTTCGG CAGCGCAGAGGA GGGCCTCAAGTGACA TERM 952 976532 - 976504 - G 81 -11.8 -3.88029 | overlap 976502 AGTCCAGACAAAATA CTCTGCGCTG GAACTTCGG CAGCGCAGAG GAGGGCCTCAAGTGA TERM 953 976909 - 976922 + H 100 -9.5 -5.4505 | CGATAGAATGCCCGA CCGCC TCAA GGCGG TTTTTTGTTGCCCGA RHE_CH00927 977113 - 978252 + | putative acetyltransferase protein TERM 954 978418 - 978392 - T 82 -13.8 -3.41878 | opp_overlap 978392 TCCTTCAACGCAGAA TGGCCGCCTT GGCGCGG AAGGCGGCCA TTGTCGGTATGCTCA TERM 955 978392 - 978418 + T 82 -13.8 -3.40299 | opp_overlap 978392 TCCTTCAACGCAGAA TGGCCGCCTT GGCGCGG AAGGCGGCCA TTGTCGGTATGCTCA bioY 979017 - 978454 - | biotin transporter protein TERM 956 978865 - 978832 - G 70 -11.7 -3.15544 | gap 1, overlap 978834 GCCGATCGCGACCAA GAGCAGCACGATCAGC ACG GC-GATCGCGCCGCGC CGGGCGCCGAGCACG TERM 957 978863 - 978834 - G 73 -12.9 -3.14051 | gap 1, overlap 978832 CGATCGCGACCAAGA GCAGCACGATCAGC ACG GC-GATCGCGCCGC GCCGGGCGCCGAGCA bioN 979650 - 979042 - | biotin transporter, permease protein TERM 958 979135 - 979164 + g 71 -8.5 -3.87815 | gap 1, opp_overlap 979134 CAGCGGCGCAAGCAG GCTCGTCGGCCGGA CCT TCAGCCCG-CGAGC TTTGTGCGCCTCGCG bioM 980324 - 979650 - | biotin transporter, ATP-binding protein TERM 959 979795 - 979824 + g 72 -4.2 -4.62069 | gap 1, overlap 979795 GCGCTTTCCGGCAGT CCG-GCGATGATC CTCTC GACCAGCGCCCGG TTTTTGAGGTCGAGC TERM 960 979895 - 979868 - G 74 -12 -3.44051 | gap 1 CGTCGAGGATGAGAA TGCCCGG-GCCGG TCG CCAGCACCGAGCA GAGCGCGGCCACCTG TERM 961 981243 - 981287 + G 73 -12.8 -3.16564 | GATTTGACCGAGCGG GTCATTCCGGCGGAATTCCG CGAGC CGGAGGTCAGCCGGGAAGAC TTCGTCGACTGGGCC RHE_CH00931 980670 - 981860 + | hypothetical protein RHE_CH00932 983130 - 982198 - | hypothetical protein TERM 962 984098 - 984125 + G 83 -9.1 -4.37092 | opp_overlap 984075 984072, overlap 984077 984076 TCGTCTACCCCGAGC GCGCGTTCTTG CCGCCT CAAGTGCGCGC TTTTATCGACGCGGT RHE_CH00933 983275 - 984273 + | LysR family transcriptional regulator ribA 984640 - 985848 + | GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase bi-functional protein (ribofalvinbiosynthesis) aroC 986906 - 985809 - | chorismate synthase TERM 963 986093 - 986115 + g 70 -9.8 -3.67611 | TCGGCGTGCCGTCAT TGCCCATGCG CAT CGCGTCGGCA TTGTCTTCGCCTGAG RHE_CH00936 987259 - 987519 + | hypothetical protein gpmB 988143 - 987553 - | phosphoglycerate mutase protein fabI2 988982 - 988164 - | enoyl-(acyl carrier protein) reductase dnaJ2 990288 - 989104 - | DnaJ family molecular chaperone RHE_CH00940 991087 - 990629 - | hypothetical protein pdxH 991153 - 991773 + | pyridoxamine 5'-phosphate oxidase RHE_CH00942 992729 - 991779 - | hypothetical protein TERM 964 991981 - 991929 - Gf 79 -9.1 -4.18494 | gap 4 GACGGCGACCGAAAA GCCCAGCC-G-GCCGGCAAGC-CCCGC CTC GCGGGCGCCCGCCGCCTCCGGC-GTGC CGTAGGGATAGGCGA TERM 965 992765 - 992785 + GH 72 -3.8 -4.60041 | opp_overlap 992754, overlap 992740 992769 ACCAGGACGCCTCGA GCCCGGCG CCGAT CGCCGCCC TTTTTGCCAATCGCT RHE_CH00943 992701 - 993102 + | hypothetical protein dacF1 993053 - 994312 + | D-alanyl-D-alanine carboxypeptidase protein TERM 966 994444 - 994472 + G 83 -5.2 -5.07486 | gap 1, opp_overlap 994436 994434 994437, overlap 994447 CCAAATATGCCGCGG CCA-ACGGCATCG AACG CGACGCCGACTGG TTTTTGTTGAAGCTG RHE_CH00945 994389 - 994706 + | hypothetical protein pit 995765 - 994752 - | phosphate transporter protein TERM 967 995195 - 995153 - G 82 -10.7 -4.00042 | gap 1, opp_overlap 995172, overlap 995156 CCTGCGAGTAAAGAA GCACGGCAATGATGCCCA TCGTCTTC TGGGCGTCATTGCCGC-C ATGACCGAGCGAATA TERM 968 995193 - 995156 - G 81 -15.7 -3.05069 | opp_overlap 995172, overlap 995153 GCGAGTAAAGAAGCA CGGCAATGATGCCCA TCGTCTTC TGGGCGTCATTGCCG CCATGACCGAGCGAA TERM 969 995333 - 995323 - G 86 -6.8 -5.08255 | AGTGCCAAAAGAAAA CCGA TCA TCGG CGACATGACGATAGC RHE_CH00947 996406 - 995765 - | phosphate transporter RHE_CH00948 996622 - 997164 + | MutT/NUDIX family NTP pyrophosphohydrolase RHE_CH00949 997699 - 997208 - | acetyltransferase protein tldD 999129 - 997714 - | Zn-dependent protease protein TERM 970 999062 - 999034 - G 81 -12.4 -3.86897 | gap 1, overlap 999036 GGCATGCTCGATAAA CAGCTCGCCGTCG TCGG CGCCGGCGAGC-G CCTCGGCGACGAGAC TERM 971 999061 - 999036 - G 89 -16.1 -3.5241 | overlap 999034 CATGCTCGATAAACA GCTCGCCGTCG TCGG CGCCGGCGAGC GCCTCGGCGACGAGA RHE_CH00951 1000322 - 999528 - | hypothetical protein TERM 972 1000680 - 1000707 + G 74 -2.6 -4.8622 | gap 1, overlap 1000686 1000688 ATGAAGAAGGCTTAT GCAGCTCTGACCG CAC TGGTCTGT-CTGC TTTTTGCTTCCGGCA ctaC 1000665 - 1001549 + | cytochrome-c oxidase, subunit II protein ctaD 1001567 - 1003267 + | cytochrome-c oxidase, subunit I protein TERM 973 1003309 - 1003281 - f 100 -16.7 -4.09511 | overlap 1003268 AAGACGCGCGGAAAA CCGGACGCCGCAT TCG AAACGGCGTCCGG CATAAGTAAATTCAG ctaB 1003334 - 1004284 + | protoheme IX farnesyltransferase ctaG 1004421 - 1005029 + | cytochrome C oxidase assembly protein ctaE 1005090 - 1005968 + | cytochrome-c oxidase, subunit III protein TERM 974 1006014 - 1005986 - f 85 -13.2 -3.727 | opp_overlap 1005991, overlap 1005991 GGGACGATATGCAAA CAAAAGGCGGGC CTGGT GCCCGCCTTTTT GTATTTGGCCTCGCT TERM 975 1006009 - 1005991 - f 100 -13.1 -4.92385 | opp_overlap 1005991, overlap 1005986 GATATGCAAACAAAA GGCGGGC CTGGT GCCCGCC TTTTTGTATTTGGCC TERM 976 1005991 - 1006009 + F 100 -13.1 -5.19879 | opp_overlap 1005986 1005991 GATATGCAAACAAAA GGCGGGC CTGGT GCCCGCC TTTTTGTATTTGGCC RHE_CH00957 1006001 - 1006546 + | hypothetical protein RHE_CH00958 1007665 - 1007024 - | chloranphenicol phosphotransferase protein RHE_CH00959 1007784 - 1008164 + | hypothetical protein RHE_CH00960 1008202 - 1008912 + | putative cytochrome oxidase complex biogenesis factor transmembrane protein TERM 977 1009430 - 1009453 + G 75 -12.4 -3.58726 | CCGAAATCGGTGCCG GAGGATGCGG CGAG CCGCAACCTC TTCTATCTCGACGCC ispH 1009136 - 1010155 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 978 1011017 - 1011035 + G 71 -9.5 -3.71848 | CCTTCCGCTGCTCGC GCGCGGC TCGGC GCTGCGC TTCTTCCTGACGCGA thrB 1010211 - 1011176 + | homoserine kinase rnhA 1011173 - 1011628 + | ribonuclease H RHE_CH00964 1013288 - 1012218 - | hypothetical protein TERM 979 1013324 - 1013351 + r 86 -17 -2.71731 | opp_overlap 1013324 AGCGGCGAATTAAAA TGCCCGCTGCGC GCGT GCGCAGCAGGCA TGGTTGAGGGCTGAG TERM 980 1013351 - 1013324 - R 100 -19.2 -4.41047 | opp_overlap 1013324 AGCGGCGAATTAAAA TGCCCGCTGCGC GCGT GCGCAGCAGGCA TGGTTGAGGGCTGAG RHE_CH00965 1013566 - 1013375 - | hypothetical protein RHE_CH00966 1014290 - 1013685 - | hypothetical protein TERM 981 1014404 - 1014379 - H 82 -16.2 -2.85583 | opp_overlap 1014376 1014374, overlap 1014376 1014374 TGAAAATGAAGATTA TGTGGCCGCC GCTTCT GGCGGCCACA CGGTACTTTCGGTAA RHE_CH00967 1014467 - 1015270 + | hypothetical protein TERM 982 1015572 - 1015532 - g 76 -8.1 -4.11216 | opp_overlap 1015554 1015559 CGGTTATCTCGAAAA CCGCGACACCATCCTCGCC AAG GGCGTCGACGACATCGCCG TTCTCGCCGTCAACG RHE_CH00968 1015353 - 1015838 + | peroxiredoxin protein RHE_CH00969 1016476 - 1017225 + | zinc ABC transporter ATP-binding protein RHE_CH00970 1017222 - 1018094 + | zinc ABC transporter permease TERM 983 1018575 - 1018542 - g 83 -9.4 -4.28254 | CGCCAATATTGAAAA GGCGCTGTCGGCGG CCGATC CCGCCGATGCCGCC GCCTTCAAGGCCAAT RHE_CH00971 1018111 - 1019010 + | zinc ABC transporter substrate-binding protein RHE_CH00972 1019884 - 1019192 - | molybdate ABC transporter substrate-binding protein TERM 984 1019242 - 1019283 + g 71 -12.9 -3.0894 | opp_overlap 1019252 CGTCAACGGAAGTCG AGGTCAGAAACGCCGCCAG CTGC CTGGCGGCGTCTGCGACCC TTGAATCGGTGCTTA TERM 985 1019273 - 1019252 - G 100 -17.3 -3.89524 | opp_overlap 1019242 AGTCGAGGTCAGAAA CGCCGCCAG CTGC CTGGCGGCG TCTGCGACCCTTGAA TERM 986 1019539 - 1019558 + g 72 -2.7 -4.73448 | TTGTTCCGTCACTGG CGTAGGC GATCGA GCCGGCG TTTTTCAATATGTGT RHE_CH00973 1020216 - 1019908 - | hypothetical protein mcpX2 1022504 - 1020324 - | methyl-accepting chemotaxis protein TERM 987 1022730 - 1022689 - R 88 -13.7 -3.7108 | gap 1, opp_overlap 1022704 1022707 AGGTGCAGACGGAAA CATCACCGCGCGCCCTG-CG GAT CGTCATCGCGCGCGATGACG ATCATCATTGCGTCA TERM 988 1022704 - 1022737 + r 75 -12.5 -3.05384 | opp_overlap 1022689, overlap 1022707 CATCACCGCGCGCCC TGCGGATCGTCATCG CGCG CGATGACGATCATCA TTGCGTCAGACACAA TERM 989 1022707 - 1022734 + r 74 -12.8 -2.75064 | opp_overlap 1022689, overlap 1022704 CACCGCGCGCCCTGC GGATCGTCATCG CGCG CGATGACGATCA TCATTGCGTCAGACA RHE_CH00975 1023312 - 1022833 - | hypothetical protein RHE_CH00976 1026267 - 1023370 - | putative sensory box/GGDEF family protein TERM 990 1024650 - 1024630 - G 80 -14.7 -3.14344 | opp_overlap 1024633 CAGCCGGTCGAGGAA GACCTGCCG GTT CGGCAGGCC GGTCAGATTATCGTG TERM 991 1025357 - 1025301 - G 81 -16.4 -2.78762 | overlap 1025296 1025331 AGATGATCAACAGCA GGCCGGTCGCCGCCGTCAGCGCGAAG GACAG CCTGGCGATGCCGGCGGCGATCGACG GATCGTAGATCGCCA rimJ 1026893 - 1026279 - | alanine acetyltransferase (ribosomal) protein RHE_CH00978 1028217 - 1026922 - | processing protease protein thrC 1029645 - 1028221 - | threonine synthase TERM 992 1029238 - 1029184 - G 83 -14.3 -3.53012 | gap 1, opp_overlap 1029214 CTCGCGCCCGGCAAA GGCGTCGATCGCC-GCGCCGCC GGTATCGCCCGA GGTGGCGCCGACGATCGTCGCC CGCTCCCCACGTTTT TERM 993 1029214 - 1029249 + g 74 -5.2 -4.57073 | gap 1, opp_overlap 1029184 GCCGCCGGTATCGCC CGAGGTGGCGCCGACGA TCG TCGCCCGCTCC-CCACG TTTTTCCAGCGCATA RHE_CH00980 1029911 - 1030555 + | hypothetical protein RHE_CH00981 1031417 - 1030599 - | cytochrome-c protein RHE_CH00982 1032952 - 1031417 - | cytochrome-c oxidase, subunit I protein RHE_CH00983 1033586 - 1033029 - | cytochrome-c oxidase, subunit II protein RHE_CH00984 1035011 - 1033761 - | cytochrome-c oxidase protein RHE_CH00985 1035727 - 1035014 - | cytochrome-c oxidase protein TERM 994 1035369 - 1035390 + g 81 -4.3 -5.00616 | CCGTGATCGAGCACG GCCTGGCTG ACCT CGGTTGGGC TTTTTTCGGGAAGCG RHE_CH00986 1036734 - 1036045 - | hydrolase phosphatase protein RHE_CH00987 1038277 - 1036892 - | multidrug ABC transporter RHE_CH00988 1038395 - 1039291 + | LysR family transcriptional regulator RHE_CH00989 1039847 - 1039404 - | hypothetical protein RHE_CH00990 1040201 - 1039857 - | hypothetical protein RHE_CH00991 1040720 - 1040253 - | hypothetical protein TERM 995 1040855 - 1040833 - R 72 -9.9 -3.57792 | gap 1, opp_overlap 1040833, overlap 1040834 GCATTCAGTCGGAAA GGCCTCGGAC CTTG GTCCGAG-CC GCAGAAGCAGAGGGC RHE_CH00992 1041634 - 1040948 - | ArsR family transcriptional regulator RHE_CH00993 1041705 - 1042034 + | hypothetical protein RHE_CH00994 1042031 - 1042381 + | hypothetical protein ccrM 1042499 - 1043641 + | site-specific DNA-methyltransferase (adenine-specific) protein TERM 996 1043700 - 1043737 + T 73 -8.3 -4.12902 | opp_overlap 1043700, overlap 1043705 CAGTTGCGGGAGAAG GCCAAGGCGCCCGGGGT TCAA ACCTCGGGCGTCTTCTA TTTTAGAAATCCTTG TERM 997 1043705 - 1043732 + T 100 -17 -3.95836 | opp_overlap 1043700, overlap 1043700 GCGGGAGAAGGCCAA GGCGCCCGGGGT TCAA ACCTCGGGCGTC TTCTATTTTAGAAAT RHE_CH00996 1044724 - 1044110 - | hydrolase protein mutY 1045830 - 1044727 - | A/G-specific adenine glycosylase protein RHE_CH00998 1045873 - 1046424 + | hypothetical protein TERM 998 1047579 - 1047533 - g 75 -14.2 -2.71263 | overlap 1047520 AATGCTGTTCAAGCA GCAGCAGGTCTGGGCCGCCGCC GAT GACGGCCGCGCCGCACTGCTGC AGATGTCGAAGCTTG RHE_CH00999 1047009 - 1047788 + | putative thiol-disulfide oxidoreductase protein TERM 999 1047809 - 1047835 + F 100 -12.3 -5.64274 | gap 1, opp_overlap 1047809 ATCGTTCGACCACAA CGGGCG-ACGGC GAAA GCTGTGCGCCCG TTTTTTTGTGGCTGC TERM 1000 1047835 - 1047809 - f 70 -10.1 -3.40522 | gap 1, opp_overlap 1047809 ATCGTTCGACCACAA CGGGCG-ACGGC GAAA GCTGTGCGCCCG TTTTTTTGTGGCTGC TERM 1001 1048171 - 1048149 - g 74 -12.6 -3.31144 | opp_overlap 1048147, overlap 1048150 GCTCTATCTCGACAA TGGCGAGCGC ACC GCGCCCGCCG CCTTCAATGACAGCG TERM 1002 1048170 - 1048150 - g 80 -16.1 -2.58544 | opp_overlap 1048147, overlap 1048149 CTCTATCTCGACAAT GGCGAGCGC ACC GCGCCCGCC GCCTTCAATGACAGC TERM 1003 1049810 - 1049799 - g 75 -3.6 -4.82901 | CCTCGCCCAGAAAAA CCGG CTTG CCGA ACTCGAAAGCGAGGC smc 1047892 - 1051353 + | chromosome partition protein gstch4 1052012 - 1051359 - | glutathione S-transferase protein RHE_CH01002 1052685 - 1052086 - | hypothetical protein TERM 1004 1052500 - 1052476 - G 74 -14.3 -2.62267 | opp_overlap 1052478, overlap 1052475 1052473 1052478 TGCACAAACGAAGAT CAGGGCGGTTC CAT GAACCGTCCTG GGTTGAGGGACCCCC TERM 1005 1052580 - 1052546 - G 79 -11.5 -3.96216 | opp_overlap 1052547, overlap 1052547 GCCGGACGGAAACAA GGCTTTGCGGGAC ATTGTTGCG GTCCCGCAAAGCT TTTTTTATGCCTTCT TERM 1006 1052547 - 1052579 + g 100 -15 -5.66684 | opp_overlap 1052547 1052546 CCGGACGGAAACAAG GCTTTGCGGGAC ATTGTTGCG GTCCCGCAAAGC TTTTTTTATGCCTTC TERM 1007 1052579 - 1052547 - G 78 -15 -2.97408 | opp_overlap 1052547, overlap 1052546 CCGGACGGAAACAAG GCTTTGCGGGAC ATTGTTGCG GTCCCGCAAAGC TTTTTTTATGCCTTC TERM 1008 1053087 - 1053064 - g 75 -3 -4.9218 | overlap 1053065 CACCTATTATAAAAA TGGCGGTCAT ATCG ACGACCGGCT GAAGGCCGAGGTGCG TERM 1009 1053380 - 1053355 - g 86 -17.7 -2.70932 | opp_overlap 1053346, overlap 1053369 GGGCCTCGGCAACGA CGTCTTCGAGG AGAT CCTCGAAGACG AGAAGGCCAAGCTCG TERM 1010 1054561 - 1054607 + G 100 -22.3 -3.53012 | opp_overlap 1054549 CAATGCCGATACGCC GGCCGATGCCCGCGCCGCC CGCTCCTTC GGCGCCGAGGGCATCGGCC TTTGCCGCACCGAAC ppdK 1052894 - 1055560 + | pyruvate phosphate dikinase RHE_CH01004 1056118 - 1055570 - | hypothetical protein TERM 1011 1055915 - 1055929 + g 78 -7 -4.56597 | opp_overlap 1055923 TTGCGACTGCCGCCC CGGGAG AAG CGCCCG TTTTTCGCGAGGCGC TERM 1012 1056595 - 1056615 + G 82 -11.1 -4.08692 | opp_overlap 1056587 GAAGAAGCTGAACTG CCCGCAATG CGG CAATGCGGG TTTTGCCGAGGCTTC RHE_CH01005 1056476 - 1056802 + | hypothetical protein RHE_CH01006 1057278 - 1056889 - | hypothetical protein TERM 1013 1057127 - 1057071 - G 88 -16.3 -3.31322 | overlap 1057095 GGCAATCGGCGATAA GCCCCGCGGCCGGCAGGTCGAACAGCA GTT CGCCGCCGGAACGGCCGGCCGCCTGGC GCACCGCCTCGCAGA TERM 1014 1057864 - 1057885 + G 70 -10.1 -3.60296 | overlap 1057854 CGGGCTTGCCGCACT GGCGGCG CTGATCTA CGCCGCC TTTCCGCTCGGCATC RHE_CH01007 1057622 - 1058527 + | hypothetical protein TERM 1015 1058583 - 1058545 - T 78 -12.4 -3.53012 | overlap 1058546 CGCGGTGCCGCCAAA GGCGGCAGCAATCGATCC AGT GAATCGATTGCAGCGGCG AACGCCCTGAGCCCA TERM 1016 1058582 - 1058546 - T 82 -15.9 -2.71712 | overlap 1058545 GCGGTGCCGCCAAAG GCGGCAGCAATCGATCC AGT GAATCGATTGCAGCGGC GAACGCCCTGAGCCC RHE_CH01008 1059371 - 1058691 - | hypothetical protein RHE_CH01009 1060418 - 1059486 - | polyhydroxybutyrate depolymerase protein RHE_CH01010 1060933 - 1060481 - | MutT/NUDIX family NTP pyrophosphohydrolase RHE_CH01011 1063041 - 1061320 - | hypothetical protein TERM 1017 1062382 - 1062331 - G 86 -16.5 -3.23395 | gap 1, opp_overlap 1062333 ATCCACCAGCAGGAA GGTGCGGCTGGCGAGCGGCGCCGC GTCAG GCGGCGC-GATCGTCACCCGCATC TGATCGATCAGCCCG TERM 1018 1062333 - 1062380 + g 90 -19.9 -2.80816 | gap 1, opp_overlap 1062331 CCACCAGCAGGAAGG TGCGGCTGGCGAGCGGCGCCGC GTCAG GCGGCGC-GATCGTCACCCGCA TCTGATCGATCAGCC TERM 1019 1062496 - 1062520 + g 76 -8.4 -4.18018 | GATCTTCACATGCGC CGAGGGGGCG ATGCC CGCCGCCACG TTTTCGATGCGGGAG RHE_CH01012 1063487 - 1063038 - | hypothetical protein RHE_CH01013 1064462 - 1063509 - | beta-lactamase family protein RHE_CH01015 1064773 - 1065495 + | hypothetical protein TERM 1020 1065682 - 1065667 - g 78 -3.2 -5.0538 | GCCGAGCGCAAAAAA TCGAGG AGGT CGTCGA GACCATCAGGCGTCT RHE_CH01016 1065492 - 1065986 + | hypothetical protein TERM 1021 1066023 - 1066053 + T 100 -16.9 -4.99638 | opp_overlap 1066025 TGAATGGCCTTAGCA GAGGGCCAAGGTG TCGAT CACCCTGGCCCTC TTTTTCTGTCCCTCT TERM 1022 1066051 - 1066025 - T 82 -15.9 -2.78715 | opp_overlap 1066023 AATGGCCTTAGCAGA GGGCCAAGGTG TCGAT CACCCTGGCCC TCTTTTTCTGTCCCT RHE_CH01017 1067200 - 1066178 - | hypothetical protein RHE_CH01018 1068799 - 1067858 - | oxidoreducatse protein RHE_CH01019 1069712 - 1069095 - | TetR family transcriptional regulator TERM 1023 1069732 - 1069750 + H 79 -9 -4.19624 | opp_overlap 1069742, overlap 1069732 1069735 CATTCCACTTCGATA TTTTGAAC GAC GTTCAAAA TTTATCTTGAACGTC TERM 1024 1069732 - 1069773 + H 78 -12.5 -3.32844 | opp_overlap 1069742 1069755, overlap 1069732 1069735 1069762 CATTCCACTTCGATA TTTTGAACGACGTTCAAAA TTTA TCTTGAACGTCGTTCATGA TTCTGCCATAACAGC TERM 1025 1069735 - 1069770 + H 86 -16.4 -2.83822 | opp_overlap 1069742 1069755, overlap 1069732 1069732 1069762 TCCACTTCGATATTT TGAACGACGTTCAAAA TTTA TCTTGAACGTCGTTCA TGATTCTGCCATAAC RHE_CH01020 1069824 - 1070510 + | putative negative regulator protein PspA (suppresses sigma54-dependent transcription) RHE_CH01021 1070558 - 1070839 + | hypothetical protein TERM 1026 1072601 - 1072577 - g 84 -15.7 -3.28924 | CATGGTCGCCGACAA GACCGGCTCGA TGG TCGTGCCGGTC AAGATCGACGGGCTG aas 1070949 - 1074329 + | acylglycerophosphoethanolamine acyltransferase tetA 1076080 - 1074761 - | tetracycline efflux transporter protein TERM 1027 1075817 - 1075841 + g 81 -9.9 -4.11692 | CGCGTAGAGCGCCGT CATCGCGCCGA TCG TGGGCGCGACG TTTTGGGCATGGGTG TERM 1028 1076352 - 1076327 - H 78 -11.9 -3.53563 | overlap 1076328 1076349 1076351 AGAGGCTGCCGCAAA TCTCTTCTCCC CGAG GGGAGAAGAGG GATCGAGAGGTCCCG TERM 1029 1076351 - 1076328 - H 80 -15.4 -2.71924 | overlap 1076327 1076349 GAGGCTGCCGCAAAT CTCTTCTCCC CGAG GGGAGAAGAG GGATCGAGAGGTCCC TERM 1030 1076878 - 1076860 - g 78 -10.2 -4.07568 | opp_overlap 1076864 TTGGGTTCCCGAAAA CCAACCGC ATG GCGGTGGG GCTCGGCGGCGGCCA TERM 1031 1078505 - 1078483 - g 76 -13.4 -3.13403 | opp_overlap 1078495 1078496 1078498, overlap 1078481 1078496 CGCCGCTGATGAACA CGCCCGGC ATCAACA GCCGGGCG ACCGCCCAGATGGTT TERM 1032 1079483 - 1079449 - g 71 -10.7 -3.53012 | gap 1 GCCTGCTGGTCGAAA GCGCCGACCG-GCAGC GGGC GCTGCTCGATCAGCTC GGCCTCTACGGCCCG RHE_CH01024 1076496 - 1079510 + | phosphoglycerate dehydrogenase protein TERM 1033 1079946 - 1079915 - T 91 -13.1 -4.13767 | opp_overlap 1079920, overlap 1079920 TTGTGGAGCCCAAAA CAAAACAGGCGGC ACATCG GCCGCCTGTTTTC GTCTCTTCGGGTTGC TERM 1034 1079920 - 1079941 + T 95 -13 -4.43213 | opp_overlap 1079915 1079920 GAGCCCAAAACAAAA CAGGCGGC ACATCG GCCGCCTG TTTTCGTCTCTTCGG TERM 1035 1079941 - 1079920 - T 100 -13 -5.09259 | opp_overlap 1079920, overlap 1079915 GAGCCCAAAACAAAA CAGGCGGC ACATCG GCCGCCTG TTTTCGTCTCTTCGG RHE_CH01025 1080372 - 1079965 - | hypothetical protein TERM 1036 1080410 - 1080424 + H 81 -12.8 -3.63627 | GCAGTGGCTGCGAAG CCGCCG TCG CGGCGG TTTCGCCTGTCCCGC TERM 1037 1080738 - 1080720 - H 73 -8.8 -3.93695 | CCGACCAGCGAGAAA CCCCTTTG TGA CAGAGGGG AGTGGTGATCCCGAG TERM 1038 1081249 - 1081235 - g 86 -7 -5.04385 | CAGACGGCCAAAAAA GCCTCC GTC GGCGGC AAGGAATTTGATGCG RHE_CH01027 1081145 - 1082497 + | hypothetical protein RHE_CH01028 1083027 - 1082632 - | putative transcriptional regulator protein TERM 1039 1083066 - 1083043 - H 71 -11 -3.16564 | opp_overlap 1083058 TGTCTACTCCATCAA GGCACGCACA TCCC TGTGCGTGGC GCACTTTCATGTGCA TERM 1040 1083058 - 1083070 + H 71 -9.1 -3.86684 | opp_overlap 1083043 GGCACGCACATCCCT GTGCG TGG CGCAC TTTCATGTGCATTCT RHE_CH01029 1083154 - 1084002 + | putative nucleoside-diphosphate-sugar epimerase protein RHE_CH01030 1084019 - 1084414 + | hypothetical protein RHE_CH01031 1085955 - 1085398 - | hypothetical protein TERM 1041 1086011 - 1085990 - R 86 -5.2 -5.31456 | opp_overlap 1085976, overlap 1085979 TTAAGGTATAAAAAA TACCTCAT GCATTG ACGAGGTA CGAATCGTAGGCGTA TERM 1042 1086200 - 1086243 + r 75 -11 -3.53091 | gap 1 AGGACCCTGGCCAAT GCT-CTCCCGGCTTCATGGGC TTT GCTCATGGGGTAGGGGGAAGC TTTGGCCGGAACCCT RHE_CH01032 1086598 - 1086272 - | hypothetical protein TERM 1043 1086462 - 1086474 + g 70 -10.5 -3.57144 | ATGGTGATGGGAGCG CCGGC AGA GCCGG TTTCGGCCTGGAGAG RHE_CH01033 1087337 - 1086690 - | hypothetical protein TERM 1044 1087246 - 1087234 - G 72 -7.7 -4.18018 | GCGTTCCAGCCAAAA CGATC GAC GATCG CCTTCGGCCCGGCAA RHE_CH01034 1087945 - 1087403 - | hypothetical protein TERM 1045 1087573 - 1087549 - G 72 -7.8 -4.11216 | GCGCCACTGCGAAAA TTGCGGCCGG CAGAC CCAGCCGGAA GAGATGCGGCAGACA TERM 1046 1087657 - 1087692 + g 84 -16.8 -3.02829 | CTGAAGGCTTTCGGC AGCTGGCGTCGTCGCG CTCC CTCGGCGACGCCAGCC TCTTCCACAAGTGTG RHE_CH01035 1088071 - 1088439 + | hypothetical protein TERM 1047 1088496 - 1088518 + G 70 -7.6 -4.03234 | GCATTCCGGCAGAGG CGGTCTGGCG CGC CGCCAAGCTG TTTCTGTCAGGCAAG TERM 1048 1088648 - 1088623 - g 70 -7.4 -4.10161 | GATGACGGCGCAAAA CCGGCCGCGC GTCGAA GCGCCGCCCG AACAGCCGCAGCCGA RHE_CH01036 1088447 - 1088803 + | hypothetical protein RHE_CH01037 1089042 - 1089302 + | LuxR family transcriptional regulator TERM 1049 1089729 - 1089705 - g 70 -9.9 -3.65902 | overlap 1089689 GCGAGGTGACCGAAA GCCTCGCCGAC CGC GCCCGCAAGGC CAGCAACCGCATGAT TERM 1050 1089837 - 1089876 + G 74 -9.8 -3.73775 | opp_overlap 1089830 1089833, overlap 1089838 ACTACGAACATCTGC GCCAGATGCCGCCACAGC AATT GCTGTGGCTGCGGCGGGG TTTGATCGCGCTGCG TERM 1051 1089838 - 1089875 + G 70 -13.3 -2.84051 | opp_overlap 1089830 1089833, overlap 1089837 CTACGAACATCTGCG CCAGATGCCGCCACAGC AATT GCTGTGGCTGCGGCGGG GTTTGATCGCGCTGC RHE_CH01038 1089317 - 1089910 + | hypothetical protein RHE_CH01039 1090372 - 1091505 + | hypothetical protein TERM 1052 1091562 - 1091608 + F 71 -12.3 -2.82516 | gap 1 TCTCGTCAGGGCAGA GGCGATTGGCGATGGGCATACC TCCA GGTACGTCCGA-GCCGATCGCC TCTGATCCTGGCCGG RHE_CH01040 1091965 - 1092381 + | hypothetical protein TERM 1053 1093034 - 1093067 + GT 73 -8.1 -4.08945 | opp_overlap 1093020 ACGCCGAATTCGCCC TCATCCTCGAGGACG ATCT CGACTTCGACGGTGA TTTTGCCGAGCTGCT RHE_CH01042 1094905 - 1093508 - | two-component sensor histidine kinase protein RHE_CH01041 1092715 - 1093611 + | putative glycosyltransferase protein TERM 1054 1094604 - 1094577 - GT 75 -11.2 -3.53012 | overlap 1094578 CGCGGTGCCGCGAAA TTGCCGGCAAGC TTGC GCCCGCCGGCAT CCGTCAGCGAATAGA TERM 1055 1094603 - 1094578 - GT 78 -14.7 -2.71712 | overlap 1094577 GCGGTGCCGCGAAAT TGCCGGCAAGC TTGC GCCCGCCGGCA TCCGTCAGCGAATAG RHE_CH01043 1095655 - 1094963 - | two-component response regulator protein RHE_CH01044 1097246 - 1095909 - | hypothetical protein TERM 1056 1096274 - 1096254 - G 72 -2.5 -4.7497 | opp_overlap 1096254 1096270, overlap 1096256 GTCAGCGACGAAAAA GACGATC TTCTGGC GATCGGC ATTGCTGGTGCCCGT TERM 1057 1096664 - 1096677 + g 77 -2.3 -4.98255 | overlap 1096665 CAGAAACGATGTGGC ATGCG AAGG CGCAG TTTTTATCCTTGCCG TERM 1058 1096950 - 1096967 + g 93 -7.7 -5.04385 | gap 1, overlap 1096953 GCTGATATCGACGGT CACGGGCG CGT CGCCC-TG TTTTTTGGACATCTG TERM 1059 1096953 - 1096965 + g 81 -10.5 -4.14633 | overlap 1096950 GATATCGACGGTCAC GGGCG CGT CGCCC TGTTTTTTGGACATC TERM 1060 1097201 - 1097149 - G 76 -9.7 -4.07687 | opp_overlap 1097180, overlap 1097153 1097178 AGGGCGCTGGCAAAA TCAACGGCCGTCCCCGCCGCCCC CAGCAAT GGGACGACGAGGAGCGCCGTCAT AATTCCGAAGTTGCC TERM 1061 1097197 - 1097153 - G 85 -14.9 -3.66908 | opp_overlap 1097180, overlap 1097149 1097178 CGCTGGCAAAATCAA CGGCCGTCCCCGCCGCCCC CAGCAAT GGGACGACGAGGAGCGCCG TCATAATTCCGAAGT RHE_CH01045 1098658 - 1097531 - | hypothetical protein RHE_CH01046 1099445 - 1099101 - | ArsR family transcriptional regulator RHE_CH01047 1099628 - 1100299 + | 3-oxoacyl-[acyl-carrier protein] reductase protein TERM 1062 1100336 - 1100314 - T 100 -16.3 -4.07687 | AGCCGGGGGTGAAAA GCGCGCGCT TCTTG AGCGCGCGC ATACTCGGATACCGG RHE_CH01048 1101493 - 1100702 - | 3-oxoacyl-[acyl-carrier protein] reductase protein TERM 1063 1101311 - 1101337 + g 75 -12.2 -3.57561 | overlap 1101312 ATCGGCTGCGACGGC TGCGACGGTGCC CCC GGCACCTTCGCC TTTCAGGCGTTCGGC TERM 1064 1101312 - 1101336 + g 78 -15.7 -2.74322 | overlap 1101311 TCGGCTGCGACGGCT GCGACGGTGCC CCC GGCACCTTCGC CTTTCAGGCGTTCGG cyaFch1 1103280 - 1101628 - | adenylate cyclase protein TERM 1065 1104081 - 1104062 - g 83 -5 -5.03314 | GCGACGTCGAAAAAA TTCGAGCT GCCA AGATCGAA TCGATATCGGGCCTT RHE_CH01050 1103398 - 1104714 + | hypothetical protein RHE_CH01051 1104894 - 1105235 + | hypothetical protein RHE_CH01052 1105339 - 1105548 + | hypothetical protein TERM 1066 1106193 - 1106221 + G 91 -9 -4.42325 | gap 1, opp_overlap 1106185 1106190 1106201, overlap 1106190 1106213 CAAACGATATGAGGG CCATATT-AGCGG CCCA CCGCTCGATATGG TTATTTTGTCTATAT RHE_CH01053 1106116 - 1106718 + | hypothetical protein RHE_CH01054 1107313 - 1107603 + | hypothetical protein RHE_CH01055 1107713 - 1108267 + | hypothetical protein RHE_CH01056 1108917 - 1108498 - | hypothetical protein TERM 1067 1108669 - 1108659 - G 74 -5.4 -4.59853 | TGAATGCTGCAAAAA CCAA GCC TTGG AGGATAGCGTATTCA RHE_CH01057 1109483 - 1109274 - | hypothetical protein RHE_CH01058 1110333 - 1109983 - | hypothetical protein RHE_CH01060 1111177 - 1110827 - | hypothetical protein RHE_CH01061 1112082 - 1111189 - | LysR family transcriptional regulator RHE_CH01062 1112240 - 1113556 + | putative alkyl sulfatase beta-lactamase family protein TERM 1068 1113596 - 1113567 - f 100 -20.1 -3.32343 | GGTAGACTGTGACAA GGCATCGCCTGAC TAAC GCCAGGCGATGCC CGCATATCGGCCAAA RHE_CH01063 1113786 - 1114412 + | putative SAM-dependent methyltransferase protein TERM 1069 1114774 - 1114784 + G 74 -4.6 -4.56775 | AGGTATCTCCAGTTT TCGC GGC GCGG TTTTTCCCAACCAGT RHE_CH01064 1114742 - 1115446 + | carbonic anhydrase protein TERM 1070 1116946 - 1116958 + G 76 -9.1 -4.07687 | opp_overlap 1116945 1116946 ACCCCCGCCTGAAAC CGCTG TTT CAGCG TTTTGCGACCGAGGT RHE_CH01065 1115451 - 1116983 + | sulfate ABC transporter, permease protein TERM 1071 1116982 - 1117015 + F 71 -8.7 -3.82378 | opp_overlap 1116985 1116986 1117000, overlap 1116983 CCGAGGTCGCCCGAT AAATCTGGGGAGGGC AAAC GCCCTCCCCAGGCGC TTCTTATCCATGGCT TERM 1072 1116983 - 1117014 + F 73 -12.2 -2.88945 | opp_overlap 1116985 1116986 1117000, overlap 1116982 CGAGGTCGCCCGATA AATCTGGGGAGGGC AAAC GCCCTCCCCAGGCG CTTCTTATCCATGGC TERM 1073 1117012 - 1116985 - f 100 -17 -3.85817 | opp_overlap 1116983 1116982, overlap 1116986 1117000 AGGTCGCCCGATAAA TCTGGGGAGGGC AAAC GCCCTCCCCAGG CGCTTCTTATCCATG TERM 1074 1117011 - 1116986 - f 100 -20.5 -2.91276 | opp_overlap 1116983 1116982, overlap 1116985 1117000 GGTCGCCCGATAAAT CTGGGGAGGGC AAAC GCCCTCCCCAG GCGCTTCTTATCCAT TERM 1075 1117384 - 1117357 - g 70 -7.7 -4.07885 | gap 1, overlap 1117358 GACGGTCGTGGAAAA GCTCGGC-TCCC TGGAG GGGACGCCGAGA AAATCCAGTTCCCCT TERM 1076 1117481 - 1117499 + G 70 -10.2 -3.61398 | CCCAACGAAGCTTTG GCGCATGC ACA GCACGCGC TTCTTGCCAGCGACG fusA1 1117298 - 1119259 + | elongation factor G RHE_CH01067 1120289 - 1119435 - | hypothetical protein TERM 1077 1119590 - 1119577 - G 75 -3.8 -4.7373 | TTATCGCATGAAAAA CAGG TAACGC CCTG ATAGTCCACGACCTG RHE_CH01068 1124694 - 1120411 - | hypothetical protein RHE_CH01069 1124949 - 1125614 + | hypothetical protein TERM 1078 1125805 - 1125818 + T 79 -9.5 -4.11412 | CTCGCCCGCCCTCCC GGCGC AATA GCGCC TTTAGTTCTTGATTA RHE_CH01070 1126269 - 1125820 - | hypothetical protein TERM 1079 1126054 - 1126019 - G 71 -6 -4.36914 | overlap 1126020 CCTTCGCTGACAAAA TCGACCGATCCATGCG CGGG CGCTTGAACCAGCCGT ACTGTGGGCATTGTC RHE_CH01071 1126408 - 1126752 + | hypothetical protein RHE_CH01072 1126907 - 1127245 + | hypothetical protein RHE_CH01073 1128084 - 1127215 - | hypothetical protein TERM 1080 1128237 - 1128248 + r 71 -7.2 -4.07687 | opp_overlap 1128213 1128211 TCTCAGCGAGACTTC GGCG GCAG CGCC TTTTAAACCGGCAAT gstch5 1128889 - 1128284 - | glutathione S-transferase protein RHE_CH01075 1129382 - 1128897 - | hypothetical protein RHE_CH01076 1129708 - 1129379 - | transcriptional regulator protein RHE_CH01077 1130314 - 1129898 - | hypothetical protein RHE_CH01078 1130824 - 1130360 - | hypothetical protein RHE_CH01079 1131150 - 1130821 - | ArsR family transcriptional regulator RHE_CH01080 1131270 - 1131647 + | hypothetical protein RHE_CH01081 1131670 - 1132917 + | hypothetical protein ndiA1 1132920 - 1133486 + | nutrient deprivation-induced protein ndiA2 1133479 - 1133895 + | nutrient deprivation-induced protein ndiA3 1133994 - 1134905 + | nutrient deprivation-induced protein RHE_CH01085 1135462 - 1136508 + | putative esterase protein TERM 1081 1136908 - 1136926 + G 75 -11.7 -3.65902 | GTGTTCCTTTCGAAT GGCGCGA CCATA TCGCGCC TTTCGATCCCATGAC aacC1 1136589 - 1137461 + | aminoglycoside N3`-acetyltransferase protein RHE_CH01087 1137596 - 1137928 + | hypothetical protein RHE_CH01088 1138071 - 1138604 + | hypothetical protein RHE_CH01089 1139554 - 1138655 - | putative hydrolase protein TERM 1082 1139071 - 1139051 - G 73 -12.5 -3.25088 | GGCGAAACCCATCAA GGCGACGCG CTG CGCGTCGAC AAAGCCTAATTTCGA RHE_CH01090 1140005 - 1140235 + | hypothetical protein TERM 1083 1140399 - 1140410 + G 70 -7.2 -4.03234 | opp_overlap 1140387, overlap 1140355 ATAGCGCCATTGTCG GCGC CCGC GCGC TTTATATCGGCACGG RHE_CH01091 1140332 - 1140568 + | hypothetical protein TERM 1084 1140873 - 1140847 - gf 71 -6.5 -4.20868 | gap 1 GGTCGAAAAGAAGAA TG-CGGCCGGCG AGAC CACCGGCTGGCA GGAAAATGGCGAGGC RHE_CH01092 1140587 - 1141057 + | putative terminase small subunit protein RHE_CH01093 1141023 - 1142594 + | putative terminase large subunit protein TERM 1085 1143276 - 1143239 - g 73 -3.1 -4.7173 | overlap 1143240 GAGGAGATGGAAAAA CGCTTCGGCCGTGAGGC GATG GCCTCCGGGGCGGCGCA GGCGGCAGCGGGCGG RHE_CH01094 1142594 - 1144699 + | hypothetical protein TERM 1086 1144994 - 1144962 - g 74 -5.4 -4.66609 | overlap 1144968 CAGCCGATCGAAAAA CCCAAAGCGGACCG GAAGG CGATCCGCAACGAG TTGCGGCGGGTCTAC TERM 1087 1144988 - 1144968 - g 78 -10.4 -4.00407 | overlap 1144962 ATCGAAAAACCCAAA GCGGACCG GAAGG CGATCCGC AACGAGTTGCGGCGG RHE_CH01095 1144716 - 1145027 + | hypothetical protein RHE_CH01096 1145120 - 1146157 + | hypothetical protein RHE_CH01097 1146190 - 1147164 + | hypothetical protein TERM 1088 1147400 - 1147456 + G 86 -12.2 -4.13767 | gap 1, overlap 1147402 1147403 CAGTGGACCAGGGAT TATGTCGCTTCGCT-GCTGACCACGGC GGGC GCCGTCGTCGGCCAGCGCTGCGGCGTC TTTTCCGGTGCCGCC TERM 1089 1147402 - 1147454 + G 85 -14.8 -3.6692 | gap 1, overlap 1147400 1147403 GTGGACCAGGGATTA TGTCGCTTCGCT-GCTGACCACGGC GGGC GCCGTCGTCGGCCAGCGCTGCGGCG TCTTTTCCGGTGCCG TERM 1090 1147403 - 1147453 + G 81 -16.1 -2.79831 | gap 1, overlap 1147402 1147400 TGGACCAGGGATTAT GTCGCTTCGCT-GCTGACCACGGC GGGC GCCGTCGTCGGCCAGCGCTGCGGC GTCTTTTCCGGTGCC TERM 1091 1147483 - 1147528 + G 70 -11.7 -3.12803 | gap 1, overlap 1147481 CGCCCAGCCGCCGAC GCTGACCGGCGGCCCGGTTGGC GCC GTGACCCTGGCCGCCGG-CACC TATTACCTCTGGCTG RHE_CH01098 1147187 - 1147972 + | hypothetical protein TERM 1092 1148035 - 1148055 + F 74 -12.6 -2.80994 | ACTTCTCTTGCGTCA TGCTCGGG CTTGT CCCGAGCA TCTGCTGCCGTTCGA TERM 1093 1148102 - 1148082 - f 74 -12.6 -2.79183 | TCGATGCGTAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGAGAGGAGATG TERM 1094 1148562 - 1148516 - g 76 -12.9 -3.51329 | opp_overlap 1148520 CACCGCCAAGCAGAA GATCGGCATGGGCGCCAACGA GCTGA CCGCCGCCGCCCGTGCCTATC TCGCCACCGCCGAAA RHE_CH01099 1148115 - 1148726 + | hypothetical protein RHE_CH01100 1148966 - 1149673 + | hypothetical protein TERM 1095 1150361 - 1150341 - f 81 -10.3 -4.11216 | opp_overlap 1150342, overlap 1150342 TGCGCAGCTCGAAAA GGGGCGCGG TCG CCACGCCCT ATGTCGCCTCGACGA TERM 1096 1150360 - 1150342 - f 78 -13.8 -3.06515 | opp_overlap 1150342, overlap 1150341 GCGCAGCTCGAAAAG GGGCGCGG TCG CCACGCCC TATGTCGCCTCGACG TERM 1097 1150342 - 1150360 + F 70 -11.6 -2.89564 | opp_overlap 1150342 1150341 GCGCAGCTCGAAAAG GGGCGCGG TCG CCACGCCC TATGTCGCCTCGACG TERM 1098 1151011 - 1151045 + F 75 -11.5 -3.41988 | gap 2, overlap 1151008 CCGCTTCGTCGGCAT GCCGGCCTCCTGCTGGG CGA CCTGGCAGGA--CCGGC TGTTCTTCGGTGCGG RHE_CH01102 1151530 - 1151907 + | hypothetical protein RHE_CH01103 1151873 - 1152877 + | hypothetical protein TERM 1099 1153857 - 1153843 - g 74 -5.6 -4.40963 | ATGCCGTAAAAACAA TGGCAG AGG CAGCCA AAACGAAGCTCGAAA TERM 1100 1154485 - 1154461 - g 76 -13.5 -3.13403 | opp_overlap 1154472 1154475 1154480, overlap 1154459 CGGTGGCGAGCAAGA CTGGCGGCGCC GGA GCCACCGCCAG CGGCGCGGCTGTGGG RHE_CH01104 1153311 - 1154732 + | hypothetical protein TERM 1101 1155050 - 1155060 + F 79 -2.4 -5.27938 | CGCCCAAGAGTCAAT TGCC GGG GGCC TTTTTGTTTGGAGAT RHE_CH01105 1155300 - 1156154 + | hypothetical protein TERM 1102 1156310 - 1156329 + F 100 -12.8 -5.27938 | opp_overlap 1156301 1156310 1156309 TACACACGCCACAAT GGCCTCGC AATC GCGGGGCC TTTTTCTTTGGAGAT RHE_CH01106 1156350 - 1156805 + | hypothetical protein TERM 1103 1156938 - 1156962 + F 75 -9.9 -3.78953 | opp_overlap 1156940, overlap 1156939 CCAGGATTCAGAGTA AAGCCGACAGC TCG GCTGTCGGCGA TTTCGTCGTCGGCCT TERM 1104 1156939 - 1156961 + F 76 -13.4 -2.87051 | opp_overlap 1156940, overlap 1156938 CAGGATTCAGAGTAA AGCCGACAGC TCG GCTGTCGGCG ATTTCGTCGTCGGCC TERM 1105 1156960 - 1156940 - f 100 -16.9 -3.85092 | opp_overlap 1156939 1156938 AGGATTCAGAGTAAA GCCGACAGC TCG GCTGTCGGC GATTTCGTCGTCGGC RHE_CH01107 1157057 - 1157704 + | hypothetical protein RHE_CH01108 1158150 - 1159043 + | hypothetical protein TERM 1106 1159269 - 1159283 + T 72 -10 -3.61398 | CGCACCGTCGCTTAT CGCGAT CCC ATCGCG TTCTTCCAAGCGACG RHE_CH01109 1160150 - 1159251 - | putative acyltransferase protein TERM 1107 1160202 - 1160184 - H 70 -10.2 -3.27382 | overlap 1160182 1160180 CGCGAATACAACAGA CAGGGCGG CAA CCGCTCTG ACGGTATCGATACCT TERM 1108 1160321 - 1160292 - H 75 -9.5 -3.70722 | opp_overlap 1160300 TTTATCAAGAGACAA TTATTAGTGTACT TGCG AGTACTCTAATAA GCCGCCGACACTGAG RHE_CH01110 1160348 - 1160560 + | hypothetical protein RHE_CH01111 1162761 - 1160776 - | hypothetical protein TERM 1109 1161679 - 1161666 - G 71 -5.9 -4.2558 | overlap 1161667 GATCGGTGACGAAAA CCCGG TTTG CCGGA TCGAATGCACGGCCG TERM 1110 1162871 - 1162844 - H 86 -2 -5.64421 | gap 1, overlap 1162846 1162858 1162860 1162861 ATCGGAAATAAAAAA CT-CGTAGCAG CAAAGAC CCGCCACGGAG CAGTCTCAATTCCGA TERM 1111 1163315 - 1163337 + GH 76 -7.7 -4.25104 | gap 1, overlap 1163319 ATCGGGGCTCTTCGC TGCG-GCGGC GATC GTCGCCCGCA TTTTCGTCCAGCAGA RHE_CH01112 1163163 - 1163396 + | hypothetical protein RHE_CH01113 1163371 - 1163835 + | putative lysozyme protein TERM 1112 1163928 - 1163953 + TF 71 -11.1 -3.11192 | gap 1 TCGATCGGCTACCCC TCGGCGGCGCGT CAG GCGCG-CGCCGG TTACGTCCTCATGTC TERM 1113 1163999 - 1163975 - Tf 71 -7.8 -4.09685 | gap 1 CCTCATGTCCGAAAA GACCGCCGCCG AAGC CAG-GGCGGCC GAGATGGAGCGTCAG RHE_CH01114 1166300 - 1164390 - | hypothetical protein TERM 1114 1165717 - 1165692 - Gf 70 -11.8 -2.61383 | overlap 1165691 ACCTTCACCTACAAT TTCGCCGGCG GCACCT CGCCGGCGAG CGGGACAATCACCTG RHE_CH01115 1166294 - 1166722 + | hypothetical protein TERM 1115 1166976 - 1166932 - fH 70 -10.7 -3.24902 | opp_overlap 1166941 1166971 GAAGAGCATGAGCAA TCGCCAAGTTCGTATTCCCGG GCC CCGGGAACATGATGTTGCCGA GCATTGCCGCAAGTT TERM 1116 1166941 - 1166967 + FH 70 -11.6 -3.02461 | opp_overlap 1166932 GAGCAATCGCCAAGT TCGTATTCCCGG GCC CCGGGAACATGA TGTTGCCGAGCATTG RHE_CH01116 1167227 - 1167502 + | hypothetical protein RHE_CH01117 1167768 - 1167559 - | hypothetical protein TERM 1117 1167730 - 1167745 + g 73 -3.2 -4.7254 | gap 1 TCCGGTACAAAAAAC CCG-GCG GTC CGTTCGG TTTTTCGTGGCAAAT TERM 1118 1167848 - 1167830 - R 79 -2.3 -5.17353 | ACAGCCACGAAAAAA GCCCGTC TTCGC GACCAGC CGGTAACGTAAATGT RHE_CH01118 1168904 - 1167996 - | ECF subfamily RNA polymerase sigma factor TERM 1119 1168225 - 1168212 - G 72 -2.3 -4.67556 | overlap 1168213 1168216 ATAATAGGTGAAAAA TCGAC CGAC GTCGG CGGCACCCGAGATTT TERM 1120 1168567 - 1168531 - G 79 -9.3 -4.11484 | GGCAATTCTGCAAAA TGACCCAGGGCGACCCG CAC CGTGTCCCGCCGGATCA GCGCGTCCTCCGGGC RHE_CH01119 1169521 - 1168901 - | short-chain dehydrogenase protein degPch1 1171322 - 1169820 - | serine protease DO-like protein TERM 1121 1169992 - 1170008 + g 74 -9.3 -3.89614 | opp_overlap 1169992, overlap 1169993 TCGCCCGACTGAATA CCGGCGG CAG CCGCCGA TTTGTCCGGATTGAC TERM 1122 1169993 - 1170007 + g 70 -12.8 -2.93447 | opp_overlap 1169992, overlap 1169992 CGCCCGACTGAATAC CGGCGG CAG CCGCCG ATTTGTCCGGATTGA TERM 1123 1170119 - 1170148 + g 72 -12.1 -3.28791 | gap 1, overlap 1170116 TGCCGAGGCTCGGCT GGCCGGAGGC-CCG GCC CGGCGCTTCCGGGC TTGTCGCCGCGGCCT TERM 1124 1170374 - 1170396 + g 71 -13.4 -2.52623 | overlap 1170372 1170388 1170389 GCGTATCGGCGGAGA CGGCGGCG ACCAGCG CGCCGCCG GTCTTGTCGAGGCCG TERM 1125 1170389 - 1170426 + g 74 -11.9 -3.44848 | overlap 1170374 1170372 1170388 CGGCGGCGACCAGCG CGCCGCCGGTCTTGTCG AGGC CGACGGCATCGGCGACG TCTTTCGTGACCGGC TERM 1126 1172693 - 1172673 - g 76 -13.9 -3.19192 | CCTGATCGAATGCAA GGCGCGCGG CAT CCGCGTGCC GGAGGAGGTCGGCAT RHE_CH01121 1171858 - 1172895 + | transcriptional regulator protein RHE_CH01122 1173008 - 1173928 + | LysR family transcriptional regulator TERM 1127 1173970 - 1174009 + T 70 -10.6 -3.28791 | opp_overlap 1173947 CGCAAAATCGCTGCC GCGCTTTTGCGGGGACAG GCTT CAGCCTCCGAAAGAGCGC TTGTCGCCGCGCCAT RHE_CH01123 1174944 - 1173991 - | hypothetical protein TERM 1128 1174722 - 1174708 - G 71 -8.5 -3.96148 | opp_overlap 1174683 CGGCGTCATCAGAAA GGCGC CGGCC GCGCC CTTGAATGCAGCAAC TERM 1129 1175132 - 1175171 + r 74 -12 -3.15544 | opp_overlap 1175123 1175148 1175153 GCAGAACGGCATGGC CGGAAGCGCCAGCGAAGC AAAG GCTCTGCCGGCGCCTCTG TTGCTCAGGGTACCA RHE_CH01124 1176147 - 1175176 - | quinone oxidoreductase protein TERM 1130 1175596 - 1175614 + g 70 -7.3 -4.07568 | opp_overlap 1175599 GTGATCGGCGCCACA GGACGCG GCGAG CGCGGCC TTTTCGGCAGAACCG TERM 1131 1176655 - 1176626 - g 73 -7.1 -4.36914 | gap 1 CCTTGTCGGAGAAAA GCGCCTCGCCTCGC TGA AC-AGGCGAGAGGC CGACATCGCCGTGCG RHE_CH01125 1176219 - 1177085 + | LysR family transcriptional regulator mrcB 1179450 - 1177159 - | penicillin binding protein B TERM 1132 1178501 - 1178473 - G 73 -13.1 -3.14132 | opp_overlap 1178457 CGGCGCCCGCAGCAA CCCTGCCAGCATC GCC GACTCCGGCAGGG TGAGGGCGCCGATGT RHE_CH01127 1180196 - 1179555 - | hypothetical protein RHE_CH01128 1181292 - 1180639 - | hypothetical protein RHE_CH01129 1181876 - 1181604 - | hypothetical protein TERM 1133 1182277 - 1182307 + r 70 -10.4 -3.24365 | opp_overlap 1182282, overlap 1182268 1182265 1182276 1182279 GCGGATTTGGCCTCG CATAAGGGGCCAGT CTT GCTGGCCCCCTATC TCTTATCAGATATCG TERM 1134 1182279 - 1182305 + r 75 -13 -3.18386 | opp_overlap 1182282, overlap 1182268 1182265 1182277 1182276 GGATTTGGCCTCGCA TAAGGGGCCAGT CTT GCTGGCCCCCTA TCTCTTATCAGATAT TERM 1135 1182302 - 1182282 - R 83 -14 -3.28712 | opp_overlap 1182268 1182265 1182279 1182277 1182276 TTTGGCCTCGCATAA GGGGCCAG TCTTG CTGGCCCC CTATCTCTTATCAGA cysN 1183809 - 1182313 - | sulfate adenylate transferase subunit 1 protein (cysteine biosynthesis protein) cysD 1184764 - 1183811 - | sulfate adenylyltransferase subunit 2 TERM 1136 1184349 - 1184373 + g 70 -12.1 -3.18849 | opp_overlap 1184339, overlap 1184347 1184350 TCAAACTGGCCGGCA TCGAGCGCCTG GCG CAGGCTCTCGG TCTTCATGATGTCGG TERM 1137 1184350 - 1184372 + g 71 -13.4 -2.50988 | opp_overlap 1184339, overlap 1184349 1184347 CAAACTGGCCGGCAT CGAGCGCCTG GCG CAGGCTCTCG GTCTTCATGATGTCG TERM 1138 1184785 - 1184808 + r 71 -7.4 -4.08853 | ACTCCAGGCTATCGG TCGTTTGCGG CTGC CCGCGAACAA TTCTTTGATGTTGGC cysH 1185616 - 1184879 - | phosphoadenosine-phosphosulfate reductase protein TERM 1139 1185442 - 1185462 + g 73 -11.1 -3.56092 | GCGTCGCAATGTCGA TCGGCAGGC GGT GCGTGCCGA TTTCGGCGGTGATCA TERM 1140 1185776 - 1185741 - H 93 -5.3 -5.53288 | gap 1, overlap 1185743 1185744 CGCAATGCAAAAAAA CA-GCCGCCCGGCGGA GAAAA TCCGCCTCGCTGCCTG AATGTCTATAAAATT TERM 1141 1185773 - 1185743 - H 79 -8.1 -4.40173 | overlap 1185741 1185744 CAATGCAAAAAAACA GCCGCCCGGCGGA GAAAA TCCGCCTCGCTGC CTGAATGTCTATAAA TERM 1142 1185995 - 1186014 + H 74 -12.1 -3.05993 | AATGTGCTCGTGAAG CGGCGCG GAAATG CGCGCCG TCTGTGTGTCGATGG RHE_CH01133 1186036 - 1186482 + | putative transcriptional regulator protein RHE_CH01134 1186599 - 1186985 + | hypothetical protein RHE_CH01135 1186992 - 1187465 + | hypothetical protein betA 1189126 - 1187477 - | choline dehydrogenase TERM 1143 1188873 - 1188911 + g 78 -11.7 -3.68222 | gap 1 TTGATCGAGGACGAG CCGCCG-ATCACCTTGCC GCGC GGCGCGGTGATGCGCCGG TTGTTGAGGTTCGGC betB 1190758 - 1189295 - | betaine aldehyde dehydrogenase betI 1191380 - 1190760 - | transcriptional regulator BetI TERM 1144 1190928 - 1190948 + g 74 -12.5 -3.30124 | opp_overlap 1190912, overlap 1190924 CCCGTCGATCATCGC CGCAGCGCC CTC GGCGATGCG TTCTGCGGCGTCAGC TERM 1145 1192074 - 1192104 + G 78 -3.3 -5.00616 | GGCTCGACGATGATC GCCTTCGGACT-CGG CAT CCGTAG-CTGAAAGC TTTTTTCGACACGCC RHE_CH01139 1191552 - 1192100 + | hypothetical protein RHE_CH01140 1192910 - 1193221 + | hypothetical protein RHE_CH01141 1193299 - 1194294 + | quinone oxidoreductase protein RHE_CH01142 1194455 - 1195234 + | hypothetical protein TERM 1146 1195257 - 1195291 + T 76 -13.7 -2.79202 | gap 1, opp_overlap 1195249 1195263, overlap 1195263 GAAATCATTCAGTCG TG-AAAAGGCGCCCCG AAGC CGAGGCGCCTTTTTCA ATTTCACCTGTATCT TERM 1147 1195263 - 1195284 + T 100 -12.9 -4.81249 | opp_overlap 1195263, overlap 1195257 ATTCAGTCGTGAAAA GGCGCCCCG AAGC CGAGGCGCC TTTTTCAATTTCACC TERM 1148 1195284 - 1195263 - T 100 -15.1 -4.09864 | opp_overlap 1195263 1195257 ATTCAGTCGTGAAAA GGCGCCCCG AAGC CGAGGCGCC TTTTTCAATTTCACC RHE_CH01143 1196890 - 1195679 - | putative transporter, permease protein TERM 1149 1196660 - 1196638 - G 70 -9.8 -3.64703 | opp_overlap 1196638, overlap 1196652 TGCCGGCGACCGAAA GCGCCAGC ACCAACG GCCGGCGC TCCTTCAGCCTGTCC TERM 1150 1196753 - 1196729 - G 71 -9.2 -3.7941 | opp_overlap 1196732, overlap 1196732 GATCGCCGAGAAGAA CACCAGCGCC GAATA GGCGCCGTTG CTTAAGTCCAGTTCG TERM 1151 1197326 - 1197354 + G 86 -5.1 -5.10933 | opp_overlap 1197311 1197310, overlap 1197328 1197329 CCGTCATCGCGGCGC GGTGGCGGTCGTC GAT GGCGACGGCAAGC TTTTCTTTTCGCTCG RHE_CH01144 1197261 - 1198268 + | putative L-asparaginase II protein RHE_CH01145 1199087 - 1198302 - | DeoR family transcriptional regulator TERM 1152 1198720 - 1198741 + g 73 -11.5 -3.56092 | opp_overlap 1198733 ACCGTCAGCCCCATG TCGCGCGGC AAAT GCCGGGCGA TTTCGGCGGTCGTCG RHE_CH01146 1199195 - 1199551 + | hypothetical protein gstch6 1199843 - 1200463 + | glutathione S-transferase protein RHE_CH01148 1201283 - 1200480 - | putative transporter, permease protein RHE_CH01149 1202086 - 1201286 - | putative transporter, permease protein TERM 1153 1201373 - 1201352 - G 70 -10.1 -3.67622 | gap 1, overlap 1201355 CACGCCCAAAAGGAA CAGCC-CGGC CCA GCCGAGGCCG AGGCCGAGATGAAGC RHE_CH01150 1203134 - 1202130 - | putative ABC transporter, ATP-binding protein TERM 1154 1203499 - 1203458 - R 100 -18.2 -3.98378 | gap 1, opp_overlap 1203495, overlap 1203459 1203461 GAGACGGAAGAAGAA TGAGGCGCCATGATCGAAG GCTGT CTTCGATCA-GGCGCCTCC GCAACGGTGGTTAGT TERM 1155 1203498 - 1203459 - R 100 -21.7 -2.98304 | gap 1, opp_overlap 1203495, overlap 1203458 1203461 AGACGGAAGAAGAAT GAGGCGCCATGATCGAAG GCTGT CTTCGATCA-GGCGCCTC CGCAACGGTGGTTAG TERM 1156 1203496 - 1203461 - R 95 -18.5 -3.0371 | gap 1, opp_overlap 1203495, overlap 1203459 1203458 ACGGAAGAAGAATGA GGCGCCATGATCGAAG GCTGT CTTCGATCA-GGCGCC TCCGCAACGGTGGTT RHE_CH01151 1204067 - 1203510 - | hypothetical protein TERM 1157 1203863 - 1203901 + g 74 -2.4 -4.82901 | overlap 1203853 1203851 1203830 CATCGGCGGCAGGCG CCGATGCCGGCAG-GTGC CGCTC GCTTTCTGC-GGGATCGG TTTTTGTACGCAGGC TERM 1158 1205093 - 1205061 - H 75 -13.4 -2.59267 | gap 1, overlap 1205060 GGCAAGCAGAGCAAG GGC-AATGCCGCGGC CTAC GCCGCGGCTTCCGCC GGTGACCAAAGCGAC RHE_CH01153 1205547 - 1206008 + | hypothetical protein TERM 1159 1206190 - 1206155 - f 86 -17 -2.68785 | gap 1, opp_overlap 1206160 1206161, overlap 1206161 CATAAGGCAAATTCA GCAAAA-GCGCGGGAGC GGT GCTCACGCGCATTTTGC TAGCTGCGACCTGGT TERM 1160 1206160 - 1206184 + F 89 -11.3 -4.2828 | opp_overlap 1206155 1206161, overlap 1206161 GGCAAATTCAGCAAA AGCGCGGGAGC GGT GCTCACGCGCA TTTTGCTAGCTGCGA TERM 1161 1206183 - 1206161 - f 100 -14.8 -4.33165 | opp_overlap 1206161 1206160, overlap 1206155 GCAAATTCAGCAAAA GCGCGGGAGC GGT GCTCACGCGC ATTTTGCTAGCTGCG TERM 1162 1206161 - 1206183 + F 83 -14.8 -3.16647 | opp_overlap 1206155 1206161, overlap 1206160 GCAAATTCAGCAAAA GCGCGGGAGC GGT GCTCACGCGC ATTTTGCTAGCTGCG RHE_CH01154 1206549 - 1207445 + | LysR family transcriptional regulator TERM 1163 1208084 - 1208070 - f 74 -12.8 -2.80816 | CCGCCATCCAGTAGA CGCGCG AAG CGCGCG ATCGGTAGACCCCAT RHE_CH01156 1208357 - 1208596 + | hypothetical protein TERM 1164 1208593 - 1208578 - f 72 -2.4 -4.9218 | GAGCGAGCATAAAAA GGGAAG CGGT CGCCCC TGACGAAGAAGGAGC RHE_CH01157 1208684 - 1209148 + | putative phosphatidylethanolamine-binding protein TERM 1165 1209187 - 1209154 - T 77 -10.9 -3.767 | opp_overlap 1209161, overlap 1209155 GACGCACTGAGCAAA GGCGGAGCCGCGTGT CAGG ACACGCGGTTTCGCT CGACGGTCAGCTGCG TERM 1166 1209186 - 1209155 - T 79 -14.4 -2.85699 | opp_overlap 1209161, overlap 1209154 ACGCACTGAGCAAAG GCGGAGCCGCGTGT CAGG ACACGCGGTTTCGC TCGACGGTCAGCTGC TERM 1167 1209161 - 1209180 + T 84 -13.6 -3.6502 | opp_overlap 1209155 1209154 TGAGCAAAGGCGGAG CCGCGTGT CAGG ACACGCGG TTTCGCTCGACGGTC RHE_CH01158 1210535 - 1209168 - | hypothetical protein TERM 1168 1212912 - 1212889 - g 71 -5.8 -4.36914 | opp_overlap 1212889 TGCCCGGCGACAAAA CGGCCGTCGC CATC GCCTCAGCCG TCATTTCGCTGGCGC RHE_CH01159 1210788 - 1213085 + | putative sensory box/GGDEF family protein RHE_CH01160 1213820 - 1213098 - | transcriptional regulator protein TERM 1169 1215285 - 1215261 - g 71 -11.4 -3.41988 | overlap 1215259 GCGCACGGAACAACA GGCGGCCTCC GTCGA GGAAACCGCC GCCGCCTTGGAAGAG mcpY 1214278 - 1216068 + | methyl-accepting chemotaxis protein RHE_CH01162 1216341 - 1217144 + | putative peroxidase protein RHE_CH01163 1217194 - 1218204 + | putative exonuclease protein involved in mRNA processing TERM 1170 1218340 - 1218387 + F 74 -4.7 -4.83615 | gap 1, overlap 1218307 1218337 1218341 TTGGGCCGACGCAGC G-CCACGCGTTAGTCCCTCCCC CTTGT GGGGAGGGGTTGGGGAGGGGTC TTTTTCTCGAGCCTG TERM 1171 1218341 - 1218385 + F 73 -8.4 -4.03995 | overlap 1218307 1218337 1218340 TGGGCCGACGCAGCG CCACGCGTTAGTCCCTCCCC CTTGT GGGGAGGGGTTGGGGAGGGG TCTTTTTCTCGAGCC RHE_CH01164 1218412 - 1220037 + | ATP-dependent DNA ligase RHE_CH01165 1220154 - 1221077 + | putative aminopeptidase protein TERM 1172 1221450 - 1221468 + G 93 -3 -5.60993 | overlap 1221452 CCATCGCTGCGGCCC TTCGGCTG ATG CGGGCGGA TTTTTTTCTGGCCAA RHE_CH01166 1221323 - 1222105 + | hypothetical protein RHE_CH01167 1222204 - 1223010 + | hypothetical protein TERM 1173 1223010 - 1223024 + F 71 -11.4 -3.214 | overlap 1223008 GATCGTTGTGATGTA GCGCTG CAA CAGCGC TCTTCATATCGTCGG RHE_CH01168 1223148 - 1223882 + | hypothetical protein TERM 1174 1223921 - 1223883 - f 75 -13.2 -3.14132 | gap 2, opp_overlap 1223885 1223888 GTCGTCTGGCAGTAA CTGCCGCTGAGGCGGCCG CGATC CGGCCGCCTCAGCT-C-G CTTCGTCCGGCATCT TERM 1175 1223885 - 1223922 + F 95 -19.2 -3.15249 | gap 1, opp_overlap 1223883, overlap 1223888 CGTCTGGCAGTAACT GC-CGCTGAGGCGGCCG CGATC CGGCCGCCTCAGCTCGC TTCGTCCGGCATCTG TERM 1176 1223888 - 1223918 + F 100 -24.1 -2.56596 | opp_overlap 1223883, overlap 1223885 CTGGCAGTAACTGCC GCTGAGGCGGCCG CGATC CGGCCGCCTCAGC TCGCTTCGTCCGGCA cspA2 1224132 - 1224341 + | cold shock protein TERM 1177 1224446 - 1224465 + F 100 -9.2 -5.46706 | opp_overlap 1224446 1224444 TGAATGACTGAAAGA GGTCGGGT TCAA GCCCGGCC TTTTTGTTTTGAAAT RHE_CH01170 1224510 - 1224794 + | hypothetical protein TERM 1178 1224953 - 1224943 - g 73 -8.2 -4.05788 | overlap 1224944 TTCCGGGAAATGAAA GCGC GCA GCGC CTATGAGAAGCCGTC rpsUch1 1224850 - 1225086 + | 30S ribosomal protein S21 RHE_CH01172 1225227 - 1225463 + | hypothetical protein RHE_CH01173 1225983 - 1225501 - | MarR family transcriptional regulator TERM 1179 1225907 - 1225880 - G 70 -7.7 -4.07885 | gap 1, opp_overlap 1225903, overlap 1225883 TAGGCCCGGGTAAAA GCATGCGCCGTC GCGTA GACGGCG-AAGC ATAGCTGCTTTTCCA TERM 1180 1226162 - 1226181 + G 72 -12.2 -3.31144 | opp_overlap 1226134, overlap 1226149 1226156 CGGTCGCGCCGGCCG CGCCGTTT CCGA AAACGGCG TTCTGGACGTGACGC RHE_CH01174 1226109 - 1226531 + | organic hydroperoxide resistance (osmotically inducible) protein TERM 1181 1226559 - 1226591 + T 100 -14.2 -4.4891 | gap 1 GGGCAACAACTGCGG GCGATGGCCTTCGGC TTCG GTCGG-GGCCATCGC TTTTCTGCTGCTGAC RHE_CH01175 1227255 - 1226740 - | MarR family transcriptional regulator TERM 1182 1226835 - 1226863 + g 91 -12.3 -4.25104 | TCTGCAAGTCCTGCC GCAGCCGCGCGGA GCT TCCGTCCGGCAGC TTTTGATCGAGCGCC RHE_CH01176 1227301 - 1228071 + | hypothetical protein RHE_CH01177 1228115 - 1228582 + | hypothetical protein RHE_CH01178 1228634 - 1229413 + | putative glyoxalase protein TERM 1183 1229494 - 1229521 + T 91 -15.6 -3.59979 | overlap 1229493 GTAGAAGGGGAGTTG CGGCAGCGGC CTCTTCTT GCCGCTGCCG TTTGCGATGGAGGAA TERM 1184 1229603 - 1229578 - T 70 -11.9 -2.70932 | gap 1 TGGGGGTCCGAAGGA CGGGTCGAGACC CGT GG-CTCGACCCA GGCAAAGATGCCGGC TERM 1185 1229693 - 1229683 - T 82 -2.4 -5.35354 | overlap 1229675 CACAGAAGCAAAAAA CCCC TCC GGGC TCTCCACCTGCACAA RHE_CH01179 1231179 - 1229659 - | ABC transporter ATP-binding protein RHE_CH01180 1233235 - 1231640 - | ABC transporter ATP-binding protein TERM 1186 1231889 - 1231946 + g 76 -7.5 -4.26076 | opp_overlap 1231888 1231922 1231923, overlap 1231892 GCTGAGCGTCGAAAC CGTCTGCAGCGCCGCATCGGCCC TGAACATGAAGC GGGCCAGCGCGGCCCGGCAGGTG TTTTCATCCGCCTGC TERM 1187 1232416 - 1232433 + g 83 -7.7 -4.56597 | gap 1, overlap 1232416 1232417 GCATGATGCGCGGAA T-GCCGCC CTT GGCGGCCA TTTTTCGCCCGGCGC TERM 1188 1233560 - 1233503 - R 73 -5.6 -4.52589 | gap 3, overlap 1233504 GTCGTCTACACAAAA GCTC-TCGGCCTG-CTTC-CCTTCTCCCC AGC GGAGAGAAGGTGCCGGCAGGCGGATGAGG GGGCGCGGCGCAGAT RHE_CH01181 1235168 - 1233612 - | putative ATP-binding protein RHE_CH01182 1235367 - 1235759 + | hypothetical protein TERM 1189 1235779 - 1235802 + F 100 -12.4 -4.84918 | opp_overlap 1235779 1235776 1235764 1235761 CGGTCGAACATAGGA GCCTCGCGGT ATTC GCTGCGAGGC TTTTCTATTTGTCCG RHE_CH01183 1235837 - 1236292 + | hypothetical protein TERM 1190 1236276 - 1236303 + F 72 -4.1 -4.77157 | gap 1, overlap 1236274 TGGAAAAGCTGCTGT CG-CGCTGGCTT GATTG AGGCCAGGGACG TTTTTAATCCATTCG RHE_CH01184 1236412 - 1236729 + | hypothetical protein zwf2 1238258 - 1236741 - | glucose-6-phosphate 1-dehydrogenase tam 1239322 - 1238552 - | trans-aconitate 2-methyltransferase protein TERM 1191 1238819 - 1238852 + g 79 -8.7 -4.25104 | gap 1, opp_overlap 1238816 CCTGGAGTAATAGCT GGACG-GCGGAGCCAG CGG CTGGCGGCGCACGCCC TTTTCCTCGAAAGCG tlyC 1240678 - 1239398 - | hemolysin protein TERM 1192 1240145 - 1240165 + g 71 -5.3 -4.39166 | overlap 1240144 GGTCTTGATCTCTTC GTCAGAGAC GTT GTCGCCGAC TTTTCCTGTCTGGCC RHE_CH01188 1241558 - 1241094 - | hypothetical protein TERM 1193 1241839 - 1241803 - R 91 -18 -3.32022 | gap 1, opp_overlap 1241803, overlap 1241804 CGGCGCATAGACCAA GGCGACCCTTCCGGCCG CCAC CGGCCGGCAGGGCC-CC GTTCCCTCACGAAAA TERM 1194 1241803 - 1241840 + r 75 -12.5 -3.05384 | opp_overlap 1241803 1241804 CGGCGCATAGACCAA GGCGACCCTTCCGGCCG CCAC CGGCCGGCAGGGCCCCG TTCCCTCACGAAAAC TERM 1195 1241839 - 1241804 - R 86 -18.2 -2.58999 | opp_overlap 1241803, overlap 1241803 GGCGCATAGACCAAG GCGACCCTTCCGGCCG CCAC CGGCCGGCAGGGCCCC GTTCCCTCACGAAAA RHE_CH01189 1242889 - 1241846 - | alcohol dehydrogenase protein TERM 1196 1242476 - 1242431 - G 77 -12.6 -3.54424 | gap 2, opp_overlap 1242430 GGCGACGGCGCGAAA CGAGGTGGCGA-AGCGGC-AGC CGAG GCTTGCCGCCGTCGCATCCTCG ATCGTATCGGGCAGG TERM 1197 1243022 - 1243046 + H 83 -4.1 -5.1963 | overlap 1243033 GTCGCGCACGAATGT TGCGGCCGGAC GCC GTCCCCCGGCA TTTTTCTTGCTTCCG ilvE1 1243141 - 1244028 + | aminotransferase RHE_CH01191 1245227 - 1244328 - | LysR family transcriptional regulator TERM 1198 1246524 - 1246564 + G 90 -8.4 -4.88388 | gap 2, opp_overlap 1246536 1246538, overlap 1246529 AGACCGAGGCAGCGG CAGGTGAGGGAACATCCGGT CAC GCCGGATGATCC-T-GCCTG TTTTTGTCGAATTGT RHE_CH01192 1245365 - 1246555 + | multidrug resistance efflux system protein RHE_CH01193 1246655 - 1248274 + | multidrug resistance efflux system protein RHE_CH01194 1248290 - 1249495 + | adenylate cyclase protein nadE 1249809 - 1250642 + | NAD synthetase RHE_CH01196 1251323 - 1250652 - | glutathione S-transferase protein TERM 1199 1251355 - 1251374 + H 71 -11.4 -3.16267 | overlap 1251373 ATTTCCTCTCTCATG CAGGCGGT TGAC GCCGCCTG TTCGGTATCATTGAA RHE_CH01197 1251452 - 1252069 + | TetR family transcriptional regulator RHE_CH01198 1253395 - 1252031 - | multi-drug resistance efflux system protein TERM 1200 1252751 - 1252733 - G 71 -8.8 -3.85698 | overlap 1252747 GGCGGTGGCGAGAAA GGCGAGGA AGA TCATCGCC CCGGCAGCGAGAAAC TERM 1201 1252955 - 1252945 - G 84 -8.2 -4.42238 | CGAGCCCAACGAAAA GGCG CAG CGCC ACCAGCTGCCAGACA RHE_CH01199 1253419 - 1253760 + | hypothetical protein RHE_CH01200 1254423 - 1253761 - | hypothetical protein TERM 1202 1254094 - 1254082 - G 76 -6.2 -4.57073 | CAGGCCGCCGAAAAA GCCG ACGGG CGGC ACGATCCAGTCGCGT TERM 1203 1254581 - 1254564 - R 79 -7.7 -4.59773 | gap 1 CCTCACGCCGAAAAA CCGCGCTG CTT CAGC-CGG ACGATCTTGAAAAAA RHE_CH01201 1255204 - 1254551 - | putative ubiquinone/menaquinone biosynthesis methyltransferase protein TERM 1204 1254660 - 1254636 - G 78 -7 -4.56597 | TCGGCCGTTGAAAAA TCGCCGCGGC GCTCG GCCCAGGCGA CGATGCGGTGGATGC TERM 1205 1255318 - 1255279 - R 70 -9.9 -3.38046 | overlap 1255262 1255277 CGTTTATCGCAAACA TAGAGCGCCTTGGCGCC TCTCAC AGAGCCGCGGCGCTCTA AAAACCCAGGACTTC TERM 1206 1255343 - 1255323 - R 75 -6.1 -4.56597 | opp_overlap 1255336 GCGGCGCTCTAAAAA CCCAGGACT TCA ACTCCTGAG CGTGGAGTTGGGTTC RHE_CH01202 1255728 - 1255402 - | hypothetical protein sodB 1255942 - 1256544 + | superoxide dismutase protein TERM 1207 1256546 - 1256586 + F 71 -9 -3.84451 | gap 2, opp_overlap 1256533 1256545 1256546, overlap 1256547 1256556 1256578 AAGCCACGAAGTAAG C-GGTT-CGAGGCTGCCGCC ATC GGCGGCGGTCTCTCAGCCTG TTTGAGTTTGCGCCC TERM 1208 1256547 - 1256584 + F 79 -12.7 -3.50832 | gap 1, opp_overlap 1256533 1256545 1256546, overlap 1256546 1256556 1256578 AGCCACGAAGTAAGC GGTT-CGAGGCTGCCGCC ATC GGCGGCGGTCTCTCAGCC TGTTTGAGTTTGCGC TERM 1209 1256556 - 1256574 + F 77 -13.8 -2.89935 | opp_overlap 1256545 1256546, overlap 1256547 1256546 GTAAGCGGTTCGAGG CTGCCGCC ATC GGCGGCGG TCTCTCAGCCTGTTT TERM 1210 1256597 - 1256624 + F 100 -19.2 -4.67048 | overlap 1256616 GCCTGTTTGAGTTTG CGCCCGGCGTTC CCCC GAACGCCGGGTG TTTGTTTTCACATCC RHE_CH01204 1256682 - 1257527 + | phosphatase protein RHE_CH01205 1258301 - 1257609 - | putative transcriptional regulator-repressor protein TERM 1211 1257964 - 1257980 + g 78 -15.1 -2.79641 | overlap 1257962 1257960 ATCGCCTGGCGCAAC GGCGCCG GCA CGGCGCC TGATATCTTCTGGTT RHE_CH01206 1258428 - 1259063 + | LysE family amino acid efflux protein RHE_CH01207 1259404 - 1259117 - | hypothetical protein RHE_CH01208 1260471 - 1259512 - | hypothetical protein RHE_CH01209 1261367 - 1260468 - | myo-inositol 2-dehydrogenase protein TERM 1212 1261562 - 1261533 - R 90 -15.8 -3.53012 | GCGTCTCGTGCGAAA TGCGTGCCGAGA GCCCCA TCCCGGCACGCA CCCCTTAGAGGGCTT RHE_CH01210 1262499 - 1261576 - | sugar ABC transporter, substrate-binding protein TERM 1213 1261643 - 1261656 + g 83 -5.2 -5.03145 | opp_overlap 1261625 ACCAGCTTTTCGGCC GGCG CATCCT CGCC TTTTTTCAAGCCTTC RHE_CH01211 1263611 - 1262601 - | sugar ABC transporter, permease protein RHE_CH01212 1265185 - 1263611 - | sugar ABC transporter, ATP-binding protein TERM 1214 1265229 - 1265239 + H 71 -6.8 -4.2558 | CTCCCAAGCTCTCCC GCCA AAC TGGC TTTTGCTGGAAGATG TERM 1215 1265441 - 1265483 + G 71 -9.1 -3.74693 | gap 2, overlap 1265430 CGATCCGGTGCGCCC GCAGA-CGGCCGAGCGG-GTT CTG AACGCCGCCCGGCAGATCGGC TTTCATGGGGTGACG TERM 1216 1265877 - 1265864 - g 75 -3.7 -4.7373 | opp_overlap 1265865, overlap 1265865 1265866 CGACTGCATCAAAAA GGGCC GCAC GGCCG CCTGGTTCATCGCCG RHE_CH01213 1265388 - 1266380 + | LacI family transcription regulator cycF 1266753 - 1267193 + | cytochrome-c-556 signal peptide protein TERM 1217 1267318 - 1267344 + G 85 -15.8 -3.39595 | overlap 1267317 CTGCTCTGTCTGATC GGCGTCGCCGTT CTC GGCGGCGGCGCC TTCTACCTCGTTACC TERM 1218 1267631 - 1267653 + G 74 -9.8 -3.71913 | opp_overlap 1267618 1267617, overlap 1267629 AGCGCGGCGTCGGCC CGGGCGGAGA ACA TCTCTACCCG TCTTTTCCCTATGGC cycG 1267279 - 1268193 + | diheme cytochrome-c-type signal peptide protein RHE_CH01216 1268868 - 1268239 - | glutathione S-transferase protein RHE_CH01217 1269432 - 1268938 - | acetyltransferase protein TERM 1219 1269499 - 1269484 - H 91 -11.8 -4.38927 | opp_overlap 1269484, overlap 1269454 TGCCGATACAACAAA GCCGCC TGAC GGCGGC TTGTTGACAATATGA TERM 1220 1269484 - 1269499 + H 79 -11.8 -3.64487 | opp_overlap 1269454 1269484 TGCCGATACAACAAA GCCGCC TGAC GGCGGC TTGTTGACAATATGA TERM 1221 1269790 - 1269741 - g 95 -10 -4.52873 | CCTGCAGAAAAAGAA GCT-CATCGCCCGCATCAGCCGCC TGAA GG-GGCAGATGGAGGCGGTGGAGC GGGCGCTCGAGGCCG RHE_CH01218 1269712 - 1269984 + | hypothetical protein RHE_CH01219 1270003 - 1271031 + | cation efflux system protein bla 1271136 - 1272026 + | beta-lactamase protein RHE_CH01221 1272472 - 1274481 + | putative regulator protein gcd 1276846 - 1274507 - | glucose dehydrogenase (pyrroloquinoline-quinone) protein RHE_CH01223 1278677 - 1277037 - | hypothetical protein TERM 1222 1277254 - 1277266 + g 70 -10.5 -3.57462 | opp_overlap 1277225 CGCATCGCCGCGGCA CGGCC GGC GGCCG TTTGCGGATCGCGTG TERM 1223 1278369 - 1278342 - G 73 -8.4 -4.07885 | gap 1, overlap 1278345 GAGGTTGCCGGAAAA GATCGCTGCGCCG TCG CGCCGCAGC-ACC TCGACGTCGAGCCCG TERM 1224 1279479 - 1279490 + G 76 -7.2 -4.33907 | opp_overlap 1279479 ATGTCGAGCCATGAA GGCG AGGG CGCC TTTTCGATCTTTCTG RHE_CH01224 1278852 - 1280237 + | efflux-type transporter, drug resistance translocase protein RHE_CH01225 1280837 - 1280319 - | hypothetical protein ptrB 1283074 - 1280966 - | protease II protein RHE_CH01227 1283319 - 1283708 + | hypothetical protein RHE_CH01228 1283876 - 1284607 + | putative polysaccharide deacetylase protein RHE_CH01229 1285836 - 1284643 - | putative oxidoreductase protein TERM 1225 1285007 - 1285036 + g 74 -12.9 -3.31799 | gap 1, overlap 1285019 GCGGGATCCGTCGTG CCGTCATCCTCGCC GCC GGCGACGATG-CGG TTGTCCGCGGTTGTG TERM 1226 1285464 - 1285443 - G 78 -14.4 -2.9914 | opp_overlap 1285456 GATGTTCGAGATAGA CGCCGGGC AGTCCG GCCCGGCG GCGCAGCTGGCGCTC RHE_CH01230 1287002 - 1285953 - | putative permease protein TERM 1227 1286603 - 1286626 + g 75 -12.4 -3.63627 | CGGTGTTTTCGAGCA GCGCGCCGAT CGAC ATCGGCCCGC TTTCGAATGTCGCCG RHE_CH01231 1287335 - 1287718 + | hypothetical protein RHE_CH01232 1288589 - 1287729 - | putative ring-cleaving dioxygenase protein RHE_CH01233 1288871 - 1289290 + | universal stress protein TERM 1228 1289271 - 1289305 + F 71 -7.9 -4.15833 | gap 1 AGTGCTCCGTGCTGG TCGAGCGGCAGAAGAT CTGA ATCTGC-GCCGCTCCA TTTTCGAGTGCTCCT RHE_CH01234 1289451 - 1290119 + | putative hemolysin III protein RHE_CH01235 1290232 - 1290747 + | phosphinothricin acetyltransferase (antibiotic resistance) protein TERM 1229 1291385 - 1291357 - g 76 -9.5 -4.09685 | opp_overlap 1291365, overlap 1291358 CGCGAGCTTCGAAAA GGCCGAACTCGGC CGC GCCGATTTCGACA AAGCGGTGCTGACGG TERM 1230 1291384 - 1291358 - g 71 -13 -3.05597 | opp_overlap 1291365, overlap 1291357 GCGAGCTTCGAAAAG GCCGAACTCGGC CGC GCCGATTTCGAC AAAGCGGTGCTGACG RHE_CH01236 1290938 - 1291639 + | hypothetical protein usg 1291969 - 1291697 - | phosphoribosylanthranilate isomerase subunit TERM 1231 1292073 - 1292099 + H 100 -6.6 -5.67063 | TTCCTTTACAGGATG TTAGCAGCCACT TCG AGTGAGTGCTAA TTTTTTTATGGTGCC TERM 1232 1292153 - 1292132 - H 70 -3 -4.81249 | CTTGAAATGGAAAAA GCGCAA AACCAGATCA TTGCGC GCAGAACGCTCGATC groESch2 1292250 - 1292564 + | 10 kDa chaperonin, heat shock protein TERM 1233 1292815 - 1292794 - g 74 -9.5 -3.90112 | overlap 1292799 CGGTCGCCAAGGAAA TCGAACTCG AAGA CAAGTTCGA GAATATGGGTGCCCA TERM 1234 1293624 - 1293602 - g 74 -6.2 -4.50058 | overlap 1293605 GATCGAGAAGGAAAA CACCACCATC ATC GACGGTGCCG GTTCGAAGGCGGAAC TERM 1235 1294211 - 1294238 + G 91 -17 -3.30243 | opp_overlap 1294190 1294204 1294203 GAAGGAAGCTGCTCC GGCCATGCCGGC CGGC GCCGGCATGGAC TTCTAAGCGATCGCT groEL 1292616 - 1294244 + | chaperonin GroEL TERM 1236 1294254 - 1294281 + F 100 -18.4 -3.64487 | opp_overlap 1294249 TTCTAAGCGATCGCT CGGCCCGCTCTG CCAT CGGGGCGGGCCG TTCTTCGCACTATCG RHE_CH01240 1294338 - 1294760 + | hypothetical protein TERM 1237 1295644 - 1295672 + G 73 -10.9 -3.65313 | opp_overlap 1295644 CTGGTGATGATCGAA GCCATGGCCTGCG GCA CGCCGGTCATTGC TTTCGGCTGTGGTTC RHE_CH01241 1294846 - 1295940 + | putative glycosyltransferase protein TERM 1238 1297553 - 1297543 - g 71 -8.2 -3.87815 | overlap 1297544 CTCGACGGGGATAAA CGGC CCT GCCG GGTCCGATCCTCCAA RHE_CH01242 1295956 - 1298166 + | hypothetical protein TERM 1239 1298186 - 1298200 + T 79 -8.5 -4.47328 | opp_overlap 1298186 GGACGGTGCAGGGAA GGCGG GTCAA CCGCC TTTTCTAATCCGGTT RHE_CH01243 1298426 - 1298205 - | hypothetical protein TERM 1240 1298579 - 1298606 + H 77 -11.3 -3.5518 | opp_overlap 1298574 1298575 TCGACACAAAGTCCA GGAGACGCCGG TCGCTC TTGGCGTCTCC TTGTGTCCATGTTGC RHE_CH01244 1298641 - 1299120 + | HSP20 family molecular chaperone RHE_CH01245 1299200 - 1299709 + | HSP20 family molecular chaperone TERM 1241 1299756 - 1299705 - f 70 -10.1 -3.41051 | gap 2, opp_overlap 1299712 1299715 1299735 1299737 1299738 GCATCGCCATCAGAA GCTGACG-A-GCGCGGCGGCCAGCC ACTT GGCTGGCCGTCGCTCATCCTTCACC AGGTTGGGAAGGATA TERM 1242 1299712 - 1299747 + F 86 -18.2 -2.71681 | opp_overlap 1299705, overlap 1299715 1299735 1299737 1299738 CATCAGAAGCTGACG AGCGCGGCGGCCAGCC ACTT GGCTGGCCGTCGCTCA TCCTTCACCAGGTTG RHE_CH01246 1300041 - 1300406 + | hypothetical protein TERM 1243 1300412 - 1300445 + T 86 -14.5 -3.68024 | overlap 1300415 1300418 GACCGCATGACTGAG TGCGAACGGGCTCGG GTGT CCGGGCCCGTTCTCC TTATCTCTTCGCCAG TERM 1244 1300415 - 1300442 + T 95 -19.2 -2.94695 | overlap 1300412 1300418 CGCATGACTGAGTGC GAACGGGCTCGG GTGT CCGGGCCCGTTC TCCTTATCTCTTCGC TERM 1245 1300418 - 1300439 + T 90 -15.1 -3.60696 | overlap 1300415 1300412 ATGACTGAGTGCGAA CGGGCTCGG GTGT CCGGGCCCG TTCTCCTTATCTCTT msrB 1300993 - 1300580 - | methionine sulfoxide reductase B RHE_CH01248 1301181 - 1301396 + | hypothetical protein TERM 1246 1301557 - 1301542 - f 75 -9 -4.18213 | AACGACAAATAATAA TTGGCC TTTC GGCCAA ACGATGGTATTTGAA rosR 1301853 - 1302284 + | transcriptional regulator protein - nodulation competitiveness determinant TERM 1247 1302309 - 1302327 + T 87 -9.5 -4.64844 | opp_overlap 1302304 1302309, overlap 1302304 CAGTCAACGACAAAA GCCGGGT CTTGC GCCCGGC TTTTCTGTCTGTACC TERM 1248 1302327 - 1302309 - T 83 -8.8 -4.55491 | opp_overlap 1302309 1302304, overlap 1302304 CAGTCAACGACAAAA GCCGGG TCTTGCG CCCGGC TTTTCTGTCTGTACC RHE_CH01250 1303128 - 1302661 - | hypothetical protein TERM 1249 1303188 - 1303224 + r 91 -5.7 -5.35224 | opp_overlap 1303194 CGACAGATTTGAACC GCTAAAGCGCGCCATCG TAG TGATGCAGCGCTCCAGC TTTTGTTTTTATGCA TERM 1250 1303322 - 1303294 - R 100 -14 -4.85782 | gap 1 GCTCTCAAAAAGAAA CGCCGTGAGGGAT GGGC ATCC-TCACGGCG CAGCAATCTGCTGAA RHE_CH01251 1303966 - 1303478 - | hypothetical protein TERM 1251 1304178 - 1304195 + H 75 -9.1 -4.09685 | CATCAGGGCAGCACC GCCTTGC AATT GCAGGGC TTTTGGCCGCTCGCC RHE_CH01252 1304421 - 1305962 + | two-component sensor histidine kinase protein RHE_CH01253 1305997 - 1306887 + | putative peptidoglycan-binding protein (cell wall degradation activity) TERM 1252 1308192 - 1308180 - g 71 -6.2 -4.30978 | TGCAATCGACGAAAA CGGC TATCT GCCG ACCCATAACCGGAAG RHE_CH01254 1306996 - 1308444 + | putative methyl-accepting chemotaxis protein RHE_CH01255 1308506 - 1308850 + | hypothetical protein RHE_CH01256 1309946 - 1308870 - | hypothetical protein TERM 1253 1309700 - 1309654 - G 76 -9.3 -4.00124 | opp_overlap 1309659 GAGGCGATAAGGAAA GGCGCGGCGATCTCGATCGGC TGATT GCCGATGAACAGCGCCACGGC TGCCGGCATGGTCTC RHE_CH01257 1310459 - 1310064 - | hypothetical protein RHE_CH01258 1310890 - 1310609 - | hypothetical protein RHE_CH01259 1311530 - 1310979 - | hypothetical protein RHE_CH01260 1312050 - 1311523 - | hypothetical protein pbp 1314446 - 1312263 - | cell wall biosynthesis penicillin-binding protein TERM 1254 1314368 - 1314395 + g 75 -3.3 -4.84761 | opp_overlap 1314356, overlap 1314370 TATGGCGGCTCTTCG CCGGCCGCT TGCCCACCTC GGCGGCCTG TTTTTCTGCCCCTGT RHE_CH01262 1314638 - 1315114 + | hypothetical protein RHE_CH01263 1315680 - 1315120 - | TetR family transcriptional regulator TERM 1255 1315431 - 1315442 + g 72 -7.2 -4.18018 | overlap 1315411 GGAGCAGCGCGACGG CGCC CTCC GGCG TTTTCGCTACGAGGC TERM 1256 1316371 - 1316384 + G 71 -9.5 -3.75153 | opp_overlap 1316371 1316369 GGACCTGGCCAAACA CGGCG CCAC CGCCG TTTCGATTACGCCCG RHE_CH01264 1315799 - 1316701 + | short chain dehydrogenase TERM 1257 1316708 - 1316744 + T 85 -14.4 -3.53563 | overlap 1316738 TACCGGTGAGGCTGA CCGCCGCCCTTGGGC-GC ACT GCTGCCCTGGGGCG-CGG TTTGGGCCGCCGTCT RHE_CH01265 1317212 - 1316895 - | hypothetical protein RHE_CH01266 1317796 - 1317416 - | lactoylglutathione lyase protein TERM 1258 1317575 - 1317563 - G 71 -6.2 -4.38712 | overlap 1317565 CGCAGCCGCATAAAA CGCG TCGAC CGCG GCCTCGTTCGGGGCG RHE_CH01267 1318339 - 1318031 - | hypothetical protein RHE_CH01268 1318661 - 1318344 - | hypothetical protein RHE_CH01269 1318921 - 1318658 - | hypothetical protein TERM 1259 1319742 - 1319707 - g 76 -9.1 -4.09685 | gap 2, opp_overlap 1319718 1319738 GGGCATCGTGGAAAA GACCG--AGGCGGCC GCCGACAA GGCCGCCTGACGGTC GGATTTCCGACCCTC groESch3 1319420 - 1319737 + | 10 kDa chaperonin, heat shock protein groEL 1319785 - 1321419 + | chaperonin GroEL TERM 1260 1321658 - 1321645 - g 71 -9.5 -3.78022 | overlap 1321646 GGCACATCGAGCAAA GCGGC AGCA GCCGC CGGTGACATTGCACG RHE_CH01272 1321483 - 1321881 + | hypothetical protein RHE_CH01273 1322986 - 1322081 - | serine protease protein RHE_CH01274 1323404 - 1323138 - | hypothetical protein TERM 1261 1324820 - 1324837 + G 70 -10.5 -3.59279 | CCATGCGCTGGAAGG CCCGCCG GAGA TGGCGGG TTCGTTCTTCTGATC RHE_CH01275 1323495 - 1324850 + | GntR family transcriptional regulator TERM 1262 1325196 - 1325211 + G 75 -3.9 -4.79223 | overlap 1325194 1325188 TTCCTTCGCCGATCC GGCTG ATGGCC CGGCC TTTTTCGTCATCTGC TERM 1263 1325359 - 1325381 + G 76 -9.8 -3.85698 | opp_overlap 1325359 1325360, overlap 1325361 CTCAGGCCGCTGAAA GGCTGGCTGG TCG CCAGCCAGTA TTTCTACAAGGCCGA TERM 1264 1325377 - 1325359 - g 75 -11.7 -3.53811 | opp_overlap 1325359 1325361, overlap 1325360 CTCAGGCCGCTGAAA GGCTGGC TGGTC GCCAGCC AGTATTTCTACAAGG TERM 1265 1325361 - 1325379 + G 83 -14.6 -3.51934 | opp_overlap 1325359 1325360, overlap 1325359 CAGGCCGCTGAAAGG CTGGCTGG TCG CCAGCCAG TATTTCTACAAGGCC RHE_CH01276 1325047 - 1325415 + | hypothetical protein gstR 1326318 - 1325425 - | LysR family transcriptional regulator TERM 1266 1326253 - 1326270 + g 70 -10.5 -3.61517 | GTGCAGATGCCGTGA GGCGGCC GACA GGCTGCC TTGTTCGACGACGGT gstA 1326451 - 1327062 + | glutathione S-transferase protein RHE_CH01279 1327121 - 1328053 + | putative pyridoxine 5`-phosphate oxidase protein RHE_CH01280 1328131 - 1328592 + | hypothetical protein TERM 1267 1328928 - 1328951 + G 85 -10.3 -4.25848 | gap 1 CTCGTTGGCGCCTTC GCGCTCGACG ACACC CG-CGAGCGC TTTTCCTCGGCGATT RHE_CH01281 1328613 - 1329173 + | TetR family transcriptional regulator TERM 1268 1329642 - 1329621 - g 82 -11.5 -4.08216 | opp_overlap 1329630 CGACGCCTGGGAAAA GCGGTCTGC GCCG GCCGACCGC CGGTGGCTCGCCTAT RHE_CH01282 1329592 - 1330146 + | hypothetical protein RHE_CH01283 1330204 - 1330509 + | hypothetical protein RHE_CH01284 1331969 - 1330707 - | putative transporter, permease protein TERM 1269 1331417 - 1331404 - G 82 -3.1 -5.22312 | gap 1, overlap 1331406 AGGCATATGAAAAAA TGCAGC GCC GC-GCA GATGAGGAAGGTCAG RHE_CH01285 1332391 - 1332639 + | hypothetical protein TERM 1270 1332906 - 1332885 - g 95 -11.5 -4.56775 | opp_overlap 1332890 1332895 ACCGTGCTGGAAAAA TGGCGCGGC GCCG GCCGCGGCA TGCCGGTTCTGATCC TERM 1271 1332980 - 1332951 - g 71 -13.5 -2.61264 | opp_overlap 1332951, overlap 1332950 CGCTGGAGCGACAAG GTCGCCGGCATCG ACGC CGGCGCCGACGAC TATGTCACCAAGCCC feuP 1332690 - 1333361 + | two-component response regulator protein feuQ 1333351 - 1334754 + | two-component sensor histidine kinase protein lppA 1334873 - 1335298 + | outer membrane lipoprotein-related protein TERM 1272 1336241 - 1336203 - g 77 -13.1 -3.64755 | overlap 1336194 1336193 1336191 1336189 1336204 ACATATCGCCAAGAA CGGCGGCGCTGGCGCC-CC GTC GGCGGCGCCAG-GCAGCCC GACGTCGGAAGATGT TERM 1273 1336240 - 1336204 - g 81 -16.6 -2.78371 | overlap 1336194 1336193 1336191 1336189 1336203 CATATCGCCAAGAAC GGCGGCGCTGGCGCC-CC GTC GGCGGCGCCAG-GCAGCC CGACGTCGGAAGATG cycH 1335397 - 1336527 + | cytochrome-c-type biogenesis protein cycJ 1336524 - 1336991 + | cytochrome c-type biogenesis protein CcmE TERM 1274 1337798 - 1337788 - g 76 -8.2 -4.18018 | overlap 1337789 GCTCGTCATGGAAAA GCGC GAG GCGC TGAAGATCTGGACGG TERM 1275 1338977 - 1338950 - g 71 -6.1 -4.28432 | opp_overlap 1338967 AAGGCTAAGGCAAAA CCGACGACGCC TGCGAT GGAGCCGGCGG AATGATGCGGCGTCT cycK 1336988 - 1338982 + | cytochrome-c-type synthesis protein cycL 1338979 - 1339434 + | cytochrome-c-type biogenesis protein degPch2 1339582 - 1341171 + | serine protease DO-like protein TERM 1276 1341177 - 1341226 + F 73 -5 -4.58663 | gap 2, opp_overlap 1341182 1341183, overlap 1341184 1341185 1341188 CCAGGGCTGATCCCC GCA-AACCG-GGAGCCGTGCGGAG GAAA CTCCGCGCGGCTCGATTGTTCTGA TTTTTGAGGGATGAT TERM 1277 1341184 - 1341217 + F 95 -14.5 -3.98907 | opp_overlap 1341183 1341182, overlap 1341177 1341185 1341188 TGATCCCCGCAAACC GGGAGCCGTGCGGAG GAAA CTCCGCGCGGCTCGA TTGTTCTGATTTTTG TERM 1278 1341185 - 1341216 + F 90 -18 -2.97717 | opp_overlap 1341183 1341182, overlap 1341184 1341177 1341188 GATCCCCGCAAACCG GGAGCCGTGCGGAG GAAA CTCCGCGCGGCTCG ATTGTTCTGATTTTT TERM 1279 1341188 - 1341213 + F 86 -18.3 -2.69921 | opp_overlap 1341183 1341182, overlap 1341185 1341184 1341177 CCCCGCAAACCGGGA GCCGTGCGGAG GAAA CTCCGCGCGGC TCGATTGTTCTGATT ragA 1341237 - 1341992 + | two-component response regulator protein ragB 1341989 - 1343401 + | two-component sensor histidine kinase protein TERM 1280 1344451 - 1344462 + G 72 -7.2 -4.1891 | GGGGAATTCCTGCGC GGGC TGTC GCCC TTTGTCTTCCGCAAA TERM 1281 1345175 - 1345202 + G 80 -5.4 -4.87133 | opp_overlap 1345167, overlap 1345177 GTGAAAGCCGGCGTG CCGATGAGGCGC TGCT GCGCTTCGACAG TTTTATTTCGGGCCT TERM 1282 1345952 - 1345969 + G 73 -11.3 -3.54424 | opp_overlap 1345946 GGGAGCATATGGCGC TCAGCCG CGCC CGGCTGA TTTCAGGCGATGACA glnE 1343536 - 1346493 + | glutamate-ammonia-ligase adenylyltransferase protein TERM 1283 1346550 - 1346596 + T 82 -15.9 -2.82516 | gap 1, opp_overlap 1346580 TTTCGTCAGGGCAGA GGCGATTGGCGACGGGCATACC CCAA GGTACGTCCGA-GCCGATCGCC TCTGATCCTGGCGGA RHE_CH01297 1349148 - 1346845 - | two-component sensor histidine kinase protein TERM 1284 1348760 - 1348731 - G 73 -8.5 -4.07568 | overlap 1348732 TCGTGGCGGCGAAAA CCTTGCCGCTGGC CTGC ACCAGCAGCACGA AAGCGCCACTGTCCA pepN 1351987 - 1349339 - | aminopeptidase N protein TERM 1285 1350418 - 1350446 + g 71 -13.1 -3.01712 | opp_overlap 1350403 CCGCCGTCTGTGCGC GGTCGGTGAGGTG CAG CACCTCGCCGGCA TATTCCGCGCCGGAA TERM 1286 1352124 - 1352098 - H 76 -6.5 -4.59424 | overlap 1352092 AAAGTTAAAGCAAAA TGCCCGCGAAC GCGAA GTTTGCCGGCA AAAATCTGATTGGAT TERM 1287 1352194 - 1352221 + H 91 -15.7 -3.56643 | overlap 1352180 1352179 TTGAGCGCCACCCGC TCGCTTTCGGC TCCGCT GCCGAAAGCGA TTTCGCGACTATCCC TERM 1288 1352235 - 1352248 + H 90 -5.2 -5.40072 | overlap 1352225 GATTTCGCGACTATC CCGC TTTGCC GCGG TTTTTTTCGCCCAAC RHE_CH01299 1352358 - 1353296 + | putative permease protein TERM 1289 1353456 - 1353468 + G 74 -10.5 -3.77831 | ATGCATGTCTGATAG GCCGC TTT GCGGC TTTCGATATTACTGC TERM 1290 1353941 - 1353958 + G 95 -9.8 -4.56775 | overlap 1353910 CTCGACCTGCTCGAC GGCGGC GAGAGG GCCGCC TTTTTCCAGGCAAAT TERM 1291 1354252 - 1354228 - g 71 -11.3 -3.53012 | opp_overlap 1354236 1354237 GCGGCTTCTGGCAAA GGCGGCGCAGC GCG GCTGCGTCGGC TGGCATGACGAGCCG RHE_CH01300 1353365 - 1354396 + | hypothetical protein RHE_CH01301 1354845 - 1354654 - | hypothetical protein RHE_CH01302 1355871 - 1354978 - | DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein TERM 1292 1355225 - 1355192 - G 89 -16.7 -3.53343 | AACCGCGCCGCGAAA TTGCCGAGCAGCAGG ATCG CCTGCGGCTCGGCGA GCGCAATCTGCCGCT RHE_CH01303 1357232 - 1355940 - | HSP70 family molecular chaperone TERM 1293 1356282 - 1356256 - G 70 -10.1 -3.66178 | gap 1, opp_overlap 1356255 1356253 GGCGCGAAGTCGAAA GGCGC-CTCGTC GGCA GCCGAGAGCGCC ATCTTCGTCGCCGAC TERM 1294 1356373 - 1356386 + g 86 -6.7 -5.06451 | TTTTCCGGCTCAAGG CTGGT GCGC ACCAG TTTTTTCAGATCCTC RHE_CH01304 1360563 - 1357438 - | AcrB/AcrD/AcrF family multidrug efflux protein RHE_CH01305 1361882 - 1360560 - | HlyD family protein secretion protein TERM 1295 1363029 - 1363010 - g 70 -10.6 -3.53811 | opp_overlap 1363008, overlap 1363011 CGCAGCGTGGCGAAA TGGGCCGC CGCA GCGGCCCG CCTTGCCTGAAAGAG TERM 1296 1363028 - 1363011 - g 72 -14.1 -2.72144 | opp_overlap 1363008, overlap 1363010 GCAGCGTGGCGAAAT GGGCCGC CGCA GCGGCCC GCCTTGCCTGAAAGA RHE_CH01306 1362158 - 1363039 + | putative aminoglycoside phosphotransferase protein (antibiotic resistance protein) RHE_CH01307 1363838 - 1363050 - | 3-oxoacyl-[acyl-carrier-protein] reductase protein TERM 1297 1364058 - 1364040 - H 71 -8.9 -3.7511 | overlap 1364037 1364035 GTTTTGACAAGACAA TGGCCAT GGATG ATGGCCA CTGGCCAAGCGGAGA etf 1364081 - 1365745 + | electrotransfer ubiquinone oxidoreductase protein TERM 1298 1365889 - 1365899 + G 71 -4.6 -4.48072 | ACATTCATGACGATC TCCC GCC GGGG TTTTCTGATCGCTCT TERM 1299 1366109 - 1366061 - g 81 -12.5 -3.73072 | gap 3 AAGTGGCCTATGAAA GCGCGCATGCGCCGGGCACGATCG TCAT CGA-CACGC-CGGCGCGT-CGCGC CTACTACGTCCTCGG RHE_CH01309 1365880 - 1366494 + | hypothetical protein TERM 1300 1366517 - 1366543 + T 90 -15.9 -3.42459 | gap 1, opp_overlap 1366517 AGAACACACTGAAAA GCCGCC-GCAGC GATG GCTGCCGGCGGC TTCGTATTATCGGTC TERM 1301 1366543 - 1366517 - T 100 -15.9 -4.28977 | gap 1, opp_overlap 1366517 AGAACACACTGAAAA GCCGCC-GCAGC GATG GCTGCCGGCGGC TTCGTATTATCGGTC RHE_CH01310 1367472 - 1366570 - | putative permease protein RHE_CH01311 1367571 - 1368092 + | AsnC family transcriptional regulator TERM 1302 1368169 - 1368123 - T 82 -8.5 -4.63218 | opp_overlap 1368135 TTCTCGCTAATAAAA GCCCCTCCCCAAGCCCTCCCC ACAAG GGGGAGGGACTAATCTGGGGC ACCGTCTCGCTCCCC mgtE 1369631 - 1368258 - | magnesium (mg2+) transporter protein RHE_CH01313 1371114 - 1369891 - | putative permease protein RHE_CH01314 1371411 - 1372355 + | diacylglycerol kinase protein TERM 1303 1372352 - 1372335 - T 81 -14.1 -3.16742 | opp_overlap 1372344 GTCAATGCGGACGAA CGCCGCG AACC CGCGGCG TAAAAGCCGAAGGTT RHE_CH01315 1373702 - 1372368 - | glutamine synthetase protein bioA 1373801 - 1375168 + | putative aminotransferase RHE_CH01317 1376661 - 1375174 - | hypothetical protein TERM 1304 1375666 - 1375631 - G 81 -13.3 -3.73953 | gap 1, opp_overlap 1375631 1375652 ACGACGGCCATGAAA CGCCG-GAACGCCGTG TCTGT CACGACGCCCGCGGCG TCGATCTTCAGGCAG RHE_CH01318 1378162 - 1376663 - | hypothetical protein TERM 1305 1377430 - 1377413 - G 70 -7.7 -3.96624 | GATGGCGATGAGAAA GGCAAGA ATGC CCTTGCC GATCCGCACCGCGCC RHE_CH01319 1379190 - 1378174 - | glycosyltransferase TERM 1306 1379218 - 1379207 - R 71 -7.2 -4.11216 | TTTGCATCTCCAAAA GGCC GGGC GGCC TTGCAATCTTACTGC RHE_CH01320 1380821 - 1379328 - | hypothetical protein TERM 1307 1380674 - 1380652 - G 74 -9 -3.87994 | ATCCAGTTGTAGAAA GGCGGCTGCG AGC CGTAGCCGGC CAGAAGATATTGCGA RHE_CH01321 1381042 - 1381965 + | hypothetical protein RHE_CH01322 1383174 - 1381933 - | putative RNA polymerase sigma factor protein (sigma-70) RHE_CH01323 1383542 - 1383183 - | hypothetical protein RHE_CH01324 1383904 - 1383545 - | hypothetical protein RHE_CH01325 1384276 - 1383920 - | hypothetical protein RHE_CH01326 1384428 - 1384643 + | hypothetical protein amn 1386155 - 1384653 - | AMP nucleosidase TERM 1308 1386202 - 1386212 + r 82 -2.4 -5.36965 | opp_overlap 1386193 AAACGACGCGCGTCG ACGG AAT CCGA TTTTTTATCCTCTTG TERM 1309 1386570 - 1386594 + r 75 -11.4 -3.47617 | overlap 1386548 1386563 1386571 1386573 AGCCGAGGCTTCGAG GCATGCCGGC ATTTC GCCGGCATGA TTATACGTTTGGGAT TERM 1310 1386571 - 1386593 + r 80 -14.9 -2.68088 | overlap 1386548 1386570 1386563 1386573 GCCGAGGCTTCGAGG CATGCCGGC ATTTC GCCGGCATG ATTATACGTTTGGGA RHE_CH01328 1387173 - 1386634 - | hypothetical protein TERM 1311 1386782 - 1386821 + g 72 -7.8 -4.11216 | TAGCTGCCACCGGTG CCGGCAAGTGTGCCGATC TTGC GGCCAGTATATTTGCCGG TTTTCAGCGTCACGC TERM 1312 1387622 - 1387576 - g 70 -12 -3.14344 | overlap 1387563 CATCGCCGCCATCAA GGGCAACGACCGCGCCGCCGAG CTT CGCGCCGACGTGGCCGCCGCCA TGAACAAGATGCAGC RHE_CH01329 1387415 - 1387684 + | hypothetical protein TERM 1313 1387711 - 1387762 + F 95 -16.6 -3.60296 | gap 1, opp_overlap 1387739 AACCATCCCTCAACT CGACGTGTTGGAGCGCCGCCTGTCC AAA GGACGCATGGCGCTCCAACA-GACG TTTGAAATCGGAATG RHE_CH01330 1387898 - 1388335 + | glyoxalase protein hisCch1 1389511 - 1388399 - | histidinol-phosphate aminotransferase RHE_CH01332 1390863 - 1389655 - | insertion sequence transposase protein, IS10 RHE_CH01333 1391350 - 1390967 - | hypothetical protein TERM 1314 1391245 - 1391227 - G 70 -10.2 -3.64703 | CGCTTCGCATCGAAA CGCCCGTG AGG CACGGCCG GACGGCCACGATGCG RHE_CH01334 1391797 - 1391525 - | hypothetical protein TERM 1315 1392202 - 1392169 - g 73 -13.1 -3.15579 | gap 1 CGAAGGCGCTAGGAA CCCTGCGTC-CGGCGC TCA GTGCCGAGACGCAGGC GGCGATATCGACAGA RHE_CH01335 1391832 - 1392278 + | hypothetical protein TERM 1316 1392295 - 1392325 + T 95 -16.9 -3.64703 | opp_overlap 1392284 1392295, overlap 1392300 CACACCCGGGCATAA CAGAGCGCGGGCC TGAAT GGTCCGCGTTCTG TTTGACTCACCCAGA TERM 1317 1392325 - 1392295 - T 78 -12.5 -3.29829 | opp_overlap 1392295 1392300, overlap 1392284 CACACCCGGGCATAA CAGAGCGCGGGCC TGAAT GGTCCGCGTTCTG TTTGACTCACCCAGA TERM 1318 1392300 - 1392320 + T 83 -11.8 -3.84185 | opp_overlap 1392284 1392295, overlap 1392295 CCGGGCATAACAGAG CGCGGGCC TGAAT GGTCCGCG TTCTGTTTGACTCAC RHE_CH01336 1393198 - 1392332 - | LysR family transcriptional regulator TERM 1319 1393185 - 1393168 - G 72 -2.7 -4.70169 | gap 1 CGACATGGAAGAAAA GCTGCAGA TCG TCC-CAGC TCGCCTCTTTCATGG RHE_CH01337 1393819 - 1393487 - | hypothetical protein TERM 1320 1394224 - 1394204 - g 71 -8.2 -3.8579 | ATTGAAGAATTGAAA GCCCAGGC CAAGC GCCTGCGC CAGGCGATGAACGAT RHE_CH01338 1394120 - 1394605 + | hypothetical protein TERM 1321 1395707 - 1395748 + T 70 -10.3 -3.29461 | gap 3 TCACGGTGGAATTGC TGGCTGG-TCGCATCGGCGG TGCCT CCGTCG--GCGATCCAGCCA TTATCGCCGAGGTTA TERM 1322 1396082 - 1396063 - T 77 -12.1 -3.24747 | opp_overlap 1396059 GCCTGAGAGGAGGAA GCCGCGC CTCCTT GCGCGGC CTCGTCGATTGCCCT RHE_CH01340 1397329 - 1396358 - | transcriptional regulator protein TERM 1323 1396852 - 1396907 + g 75 -14 -3.03243 | gap 1, opp_overlap 1396871, overlap 1396865 GGTCGATCCGCCGGC GCTGGCGGCGGAAGGAAAAGGCCGGGC CGG GCTGGACCTGTTCCTTTGGC-GCCAGC TCTTCCAGCATCGAT TERM 1324 1396883 - 1396871 - G 71 -4.7 -4.4078 | opp_overlap 1396865 1396852 GCGGCGGAAGGAAAA GGCCG GGC CGGGC TGGACCTGTTCCTTT TERM 1325 1397443 - 1397432 - R 71 -7.2 -4.06419 | overlap 1397433 CGGCTGTAGAAAGAA GGCC GGGC GGCC GGGTGCGCCGCGAAG iolB 1398387 - 1397590 - | myo-inositol catabolism protein iolE 1399493 - 1398576 - | myo-inositol catabolism protein iolD 1401411 - 1399561 - | myo-inositol catabolism, acetolactate synthase protein TERM 1326 1400128 - 1400105 - G 77 -13.8 -3.33162 | opp_overlap 1400103 1400112 TATTCCATGTGATAA CTGCCCGGCG CTGT CGCCGGCCAG AGCTTGTGCAATTCG TERM 1327 1401409 - 1401426 + g 74 -4.7 -4.6645 | overlap 1401411 1401411 1401422 CCGTATCGTCTTGCC CATCGGG GCCT CCCGGAG TTTTCTCTCTGTCTG iolC 1403536 - 1401602 - | myo-inositol catabolism, sugar kinase protein RHE_CH01345 1404419 - 1403628 - | putative transcriptional regulator protein TERM 1328 1404478 - 1404464 - H 73 -12.8 -2.72144 | opp_overlap 1404464 1404469, overlap 1404463 GCAGGCTTTCGAAAT CGCGCG GCA CGCGCG CGTGCCTTTGGAGGT TERM 1329 1404469 - 1404484 + H 74 -10.4 -3.59583 | opp_overlap 1404464 1404463, overlap 1404464 CTTTCGAAATCGCGC GGCACG CGCG CGTGCC TTTGGAGGTCATTAT RHE_CH01346 1404711 - 1405826 + | oxidoreductase protein RHE_CH01347 1405914 - 1407131 + | ferredoxin reductase protein TERM 1330 1407931 - 1407943 + F 73 -9.1 -3.95836 | overlap 1407926 AGTTGGTGATTGCGT GACGG CCG CCGTC TTGTATTTTCACCCT TERM 1331 1408673 - 1408657 - g 71 -9.3 -3.68302 | opp_overlap 1408659 1408662, overlap 1408636 CGAAGACCCGAACAA CGTCGGC GTT GCCGTCG GTCTCGGCGGCAAGG ropAch1 1408070 - 1409092 + | porin outer membrane protein TERM 1332 1409140 - 1409121 - T 95 -15 -3.78775 | opp_overlap 1409121 CGGTCGATCAGGAAA GCCCGGCT CTCG AGCCGGGC TTTTTGCATTGTGCA TERM 1333 1409121 - 1409140 + T 100 -15 -4.78149 | opp_overlap 1409121 CGGTCGATCAGGAAA GCCCGGCT CTCG AGCCGGGC TTTTTGCATTGTGCA noeL2 1410380 - 1409289 - | GDP-mannose 4,6-dehydratase protein RHE_CH01351 1412640 - 1410433 - | exopolysaccharide biosynthesis protein RHE_CH01352 1413776 - 1412637 - | glycosyltransferase RHE_CH01353 1414876 - 1413773 - | putative glycosyltransferase protein RHE_CH01354 1415823 - 1414873 - | glycosyltransferase TERM 1334 1416653 - 1416668 + G 91 -9 -4.4648 | CACTGTTGATGCTGG TGCGGA ATTT TCCGCA TTTTCTCATAGCACT TERM 1335 1417041 - 1417054 + G 73 -3.1 -4.72497 | opp_overlap 1417028 TAGCCGGGCCTTACG GCGAA CCGC TTTGC TTTTCTTGATCGCTG exoQ 1416442 - 1417761 + | exopolysaccharide production protein TERM 1336 1418168 - 1418190 + G 75 -14.8 -2.71011 | TGAACCGATAGTCTT CGACGCCCGC GAT GCGGGCCTCG TCATTGCGGCGAGGT RHE_CH01356 1417944 - 1419893 + | hypothetical protein RHE_CH01357 1420116 - 1420322 + | hypothetical protein RHE_CH01358 1420615 - 1421481 + | putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein RHE_CH01359 1421489 - 1422943 + | putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein RHE_CH01360 1422945 - 1424033 + | dTDP-glucose 4,6-dehydratase protein TERM 1337 1424784 - 1424808 + G 71 -8.5 -3.87815 | opp_overlap 1424786 CCTCGTGACGGAACG GACGGCAGC AGTGGAG GCTGCCGGC TTTGTCGACATGGAG TERM 1338 1424909 - 1424897 - g 76 -9.1 -4.0031 | ATCCCCACGAAACAA GCCGT ATC ACGGC AGCCGGTTACAGCCT RHE_CH01361 1424038 - 1425876 + | hypothetical protein TERM 1339 1425951 - 1425902 - T 89 -11 -4.19953 | gap 3, opp_overlap 1425910, overlap 1425904 CACGCAATTGCAAAA GACCTAAAGCGTGACACGCGAATCC GAA AGAT-CGCG-G-CACGCTTTAGGTA GCGAGTCGGTGGCGT TERM 1340 1425949 - 1425904 - T 84 -13.6 -3.69618 | gap 3, opp_overlap 1425910, overlap 1425902 CGCAATTGCAAAAGA CCTAAAGCGTGACACGCGAATCC GAA AGAT-CGCG-G-CACGCTTTAGG TAGCGAGTCGGTGGC RHE_CH01362 1426829 - 1426050 - | two-component response regulator protein RHE_CH01363 1427385 - 1427891 + | acetyltransferase protein TERM 1341 1428453 - 1428431 - g 73 -3.2 -4.72272 | opp_overlap 1428434 1428450 GTCCTGCAGGAAAAA CCAGTGGCTG TTT CTGCGACGGG CATGAGCCACGTTCT RHE_CH01364 1427888 - 1428925 + | oxidoreductase protein RHE_CH01365 1428922 - 1430025 + | putative aminotransferase protein RHE_CH01366 1430045 - 1430731 + | hypothetical protein RHE_CH01367 1430728 - 1431699 + | UDP-glucose 4-epimerase protein RHE_CH01368 1431696 - 1432913 + | aminotransferase protein (involved in cell wall biogenesis) TERM 1342 1432964 - 1432985 + T 100 -12.3 -4.77036 | opp_overlap 1432964 TACAACATCGGGAAA GCGTGCATC ATCT GATGCGCGC TTTTTCCTCATGCGG TERM 1343 1432985 - 1432964 - T 72 -10.1 -3.61774 | opp_overlap 1432964 TACAACATCGGGAAA GCGTGCATC ATCT GATGCGCGC TTTTTCCTCATGCGG RHE_CH01369 1434420 - 1432993 - | hypothetical protein TERM 1344 1433155 - 1433143 - G 83 -9.1 -4.28254 | CGGCAACAGTGAAAA GGTCG AGA CGACC ATTCCCGATGTAGGC TERM 1345 1434639 - 1434662 + r 74 -11.8 -3.06696 | gap 1, overlap 1434660 CTCGTAATCTTCGAG CCGGCAG-GAT CTC ATCTCTGCCGG TCTATTCACGGCCGC exoF1 1436023 - 1434707 - | exopolysaccharide biosynthesis protein TERM 1346 1435969 - 1435958 - G 72 -7.2 -4.15044 | GGCTCCGGCAATAAA GGCG AGTG CGCC GACGACAAACGTCGT RHE_CH01371 1436438 - 1436202 - | hypothetical protein TERM 1347 1439666 - 1439691 + G 71 -8.3 -3.91716 | gap 1, opp_overlap 1439665 1439670, overlap 1439668 CTCACCTTCACGAAC G-AGACTGCCAG CGG CTGGCAGACTGC TTATTTCACCAGTCC RHE_CH01372 1436648 - 1441777 + | hypothetical protein RHE_CH01373 1441903 - 1443063 + | P47K family cobalamin synthesis protein RHE_CH01374 1443313 - 1447788 + | hypothetical protein RHE_CH01375 1447807 - 1449039 + | P47K family cobalamin synthesis protein RHE_CH01376 1449113 - 1449421 + | hypothetical protein TERM 1348 1450630 - 1450592 - g 81 -3.9 -5.00616 | gap 2, opp_overlap 1450603, overlap 1450593 TCCGGGTCGAAAAAA TCTCCACCATCGCCCAGTC GAT GACCGGGCT-TC-TGGAGA AGCTGATGAGTGTGG TERM 1349 1450650 - 1450672 + G 81 -9.8 -4.11484 | GATGAGTGTGGCGAT CATCGGGCTC GGC GCGCTCGATG TTTTCAGCGGTTCCA TERM 1350 1451221 - 1451259 + G 71 -12.5 -3.07113 | overlap 1451209 GAGGTCGCCCGCGTC GCCGGCGCGGAAG-AGTTC ATC GAGCGGCTTCCGCGC-GGC TTCGATACGATGCTG TERM 1351 1451305 - 1451283 - g 74 -4.7 -4.63932 | overlap 1451284 GATGCTGGAAGAAAA TGCCGCCAA TCTCT CCGGCGGCC AGAAGCAGCGGCTCG RHE_CH01377 1449463 - 1451607 + | toxin secretion ABC transporter, ATP-binding protein RHE_CH01378 1451688 - 1453067 + | HlyD family protein secretion protein RHE_CH01379 1454037 - 1453141 - | putative hydrolase protein TERM 1352 1453899 - 1453883 - G 71 -5 -4.43477 | overlap 1453884 GCCAGCGAATGAAAA TCCCGC GCGTT GCGGGT CAGGCCGGGCAGGCA RHE_CH01380 1456178 - 1454103 - | murein transglycosylase protein TERM 1353 1455690 - 1455744 + g 76 -7.8 -4.30576 | gap 3, opp_overlap 1455678 1455677 1455680, overlap 1455692 AATGACGGCGCCCTG CATCGTCTCCGGC-GCGGTG-TCGCCG AAAG CGGCGAGCACGGCTGACGGGG-CGGGG TTTTCGTCGTAGAGC TERM 1354 1456324 - 1456292 - H 72 -9.8 -3.54459 | opp_overlap 1456298 1456301 1456312 GGAATTTGCCCTAAA CCGAACTCTCCGCG CTTGT CGCGATGATTTCGG CGCTCTATGGTGCGC dapAch2 1456393 - 1457277 + | dihydrodipicolinate synthase TERM 1355 1457354 - 1457335 - f 71 -12.1 -2.84841 | overlap 1457332 AAGGGCAAGCAATGA GGGCGCG GCTTTT CGCGCCC CGAAGGGAATATCGT smpB 1457371 - 1457850 + | SsrA-binding protein RHE_CH01383 1458471 - 1457890 - | hypothetical protein rpoZ 1458770 - 1459174 + | DNA-directed RNA polymerase subunit omega TERM 1356 1459227 - 1459203 - f 71 -7.9 -4.11394 | opp_overlap 1459205, overlap 1459206 ACCTGATCCGGAAAA GAGCGACGATT ACC AATCGTCAATC TTGCGCCTTTATTGC TERM 1357 1459265 - 1459289 + F 100 -16.5 -5.35224 | TATTATTGCCCATGT GTGCGCCAATC GTT GATTGGCGCGC TTTTATTTTTGTCGG relA 1459317 - 1461551 + | guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase protein RHE_CH01386 1461749 - 1461898 + | hypothetical protein RHE_CH01387 1462054 - 1462644 + | hypothetical protein acpS 1462682 - 1463086 + | 4'-phosphopantetheinyl transferase TERM 1358 1463155 - 1463169 + F 74 -7.1 -4.46656 | CGGAGGTGTTTCAAC GCGAC CTCTC GTCGC TTTTCATGTTGTCGC lepB 1463267 - 1464010 + | signal peptidase I protein rnc 1464007 - 1464726 + | ribonuclease III TERM 1359 1464772 - 1464751 - g 77 -2.1 -4.97957 | overlap 1464753 1464754 GACACAAGAAGAAAA TATTGCGGC CGAG GCCGCTGCA CGAACCAATGGTCCG era 1464734 - 1465675 + | GTP-binding protein Era TERM 1360 1465881 - 1465896 + G 70 -10.4 -3.55622 | opp_overlap 1465874 GTGAGCAATGCCCGC TGCGGC CACT GCCGCA TTTCAGGGAGTTCAG RHE_CH01392 1465826 - 1466578 + | CRP family transcriptional regulator RHE_CH01393 1466603 - 1467166 + | putative two-component response regulator protein recO 1467316 - 1468086 + | DNA repair protein RecO TERM 1361 1468728 - 1468742 + G 73 -8.5 -4.0641 | CGCGCCGCCCGCCAT GCCGG GCGCG CCGGC TTTGTCTCGGTCCAG RHE_CH01395 1468188 - 1469183 + | putative oxidoreductase protein RHE_CH01396 1470215 - 1469358 - | hypothetical protein TERM 1362 1469882 - 1469859 - G 74 -5.2 -4.56597 | gap 1, overlap 1469861 1469862 1469864 CTGTCCGTCGAAAAA CACCAGCCGCA CCT CGCGGCCGA-G CCATTCGGAAAGCTG TERM 1363 1469881 - 1469861 - G 71 -8.9 -3.90048 | overlap 1469859 1469862 1469864 GTCCGTCGAAAAACA CCAGCCGCA CCT CGCGGCCGA GCCATTCGGAAAGCT RHE_CH01397 1470870 - 1470226 - | putative metal-dependent phosphohydrolase protein TERM 1364 1470281 - 1470257 - G 73 -6.3 -4.37658 | opp_overlap 1470245, overlap 1470244 1470258 AATGCCGCGAGAAAA TCGCGCAGG CTCCTGT CCCGCGCGG CCGCAATCCGGCGGC TERM 1365 1470912 - 1470898 - R 84 -2.7 -5.4505 | TGTCGGAAGAAAAAA CGTCG AAGAG CGCCG GCCGAAAGCGAAGGG RHE_CH01398 1472921 - 1471017 - | putative signal-transducer protein RHE_CH01399 1473343 - 1473684 + | hypothetical protein TERM 1366 1473711 - 1473728 + F 100 -14.1 -4.78848 | overlap 1473727 TTCCCGTGATCTGAA GCCGGCC CTTT GGCCGGC TTTTCTCTTTGGAGC sodC 1473808 - 1474323 + | superoxide dismutase protein RHE_CH01401 1475232 - 1474351 - | putative mechanosensitive ion channel protein RHE_CH01402 1475822 - 1475292 - | putative tyrosine phosphatase protein RHE_CH01403 1476391 - 1475819 - | putative hydrolase protein RHE_CH01404 1477266 - 1476421 - | putative aminomethyltransferase protein (glycine cleavage) RHE_CH01405 1478259 - 1477357 - | hypothetical protein RHE_CH01406 1478906 - 1478490 - | hypothetical protein RHE_CH01407 1479525 - 1478965 - | ADP-ribose phosphorylase TERM 1367 1479154 - 1479128 - G 71 -5.9 -4.29508 | gap 1 ACCGACAGGAAGAAA TGGCTCCTGATG CTGC CATCCGGA-CCA TGCGTCTTCAGGTCA RHE_CH01408 1479526 - 1479885 + | hypothetical protein TERM 1368 1480543 - 1480570 + G 100 -15 -4.15222 | gap 1, opp_overlap 1480530 1480531 AACCGCGCGAGGTGG TCGCCCTGATGCA GCC TGC-TCAGGGCGA TTTCTTCGAGGCCAT TERM 1369 1480698 - 1480684 - g 84 -8.5 -4.41348 | CTTCCGCGAAACAAA GGCCG AATCA CGGCC AACTCAGCTTTTTCT RHE_CH01409 1479894 - 1480715 + | hypothetical protein TERM 1370 1481036 - 1481046 + T 80 -5.4 -4.90471 | CTCCTTGCGTGTTGC TTCC CTG GGAA TTTTGTATTTTCGCT TERM 1371 1481218 - 1481198 - T 73 -8.3 -4.12151 | ACAAAAAAACGCAAA GCCTTTTCC CCG GGAAAACGC GTGGGCCTATATCCG pssA1 1482142 - 1481297 - | CDP-diacylglycerol-serine O-phosphatidyltransferase protein TERM 1372 1482197 - 1482180 - R 74 -10.5 -3.55801 | opp_overlap 1482180 AGCAATTCCGGCAAA GGCGCGA GGTT CCGCGCC TTAGCTGTGGCGGCT psd 1482896 - 1482198 - | phosphatidylserine decarboxylase TERM 1373 1483025 - 1483007 - H 80 -5.3 -4.89477 | gap 1, overlap 1483008 1483009 TTCTGAACAACAAAA GC-CGGTA ACGC TACCGAGC GACTAACGTAAATGT RHE_CH01412 1483268 - 1483582 + | ArsR family transcriptional regulator RHE_CH01413 1483579 - 1483938 + | hypothetical protein clpP 1483984 - 1484592 + | ATP-dependent Clp protease proteolytic subunit RHE_CH01415 1486696 - 1484819 - | putative ABC transporter, ATP-binding protein TERM 1374 1486877 - 1486845 - R 93 -12.7 -4.26903 | opp_overlap 1486850, overlap 1486846 1486850 CGGACTTGAGGAAAA GCGAAGCCGGGCG TTTCTCC CGCCCGGCTTCAT CAGGTGGCGTTACCC TERM 1375 1486876 - 1486846 - R 85 -16.2 -3.1582 | opp_overlap 1486850, overlap 1486845 1486850 GGACTTGAGGAAAAG CGAAGCCGGGCG TTTCTCC CGCCCGGCTTCA TCAGGTGGCGTTACC TERM 1376 1486872 - 1486850 - R 82 -13.4 -3.39521 | opp_overlap 1486850, overlap 1486846 1486845 TTGAGGAAAAGCGAA GCCGGGCG TTTCTCC CGCCCGGC TTCATCAGGTGGCGT TERM 1377 1486850 - 1486872 + r 78 -13.4 -3.16683 | opp_overlap 1486850 1486846 1486845 TTGAGGAAAAGCGAA GCCGGGCG TTTCTCC CGCCCGGC TTCATCAGGTGGCGT RHE_CH01416 1488957 - 1486906 - | peptidoglycan binding protein RHE_CH01417 1489115 - 1489738 + | hypothetical protein RHE_CH01418 1490668 - 1489754 - | hypothetical protein leuA1 1492489 - 1490876 - | alpha-isopropylmalate/homocitrate synthase family transferase TERM 1378 1491120 - 1491078 - G 70 -9.8 -3.57263 | opp_overlap 1491078 1491082 ATGCGCACCTTGAAA TCGGCGAGCACCAGATCG TCGATCT CGTGCTGGTACTTGCCGA AATCCTTGCGCAGCG TERM 1379 1492334 - 1492322 - G 74 -4.7 -4.56597 | CCTCTCGCCGAAAAA GGCGG TGT CCGTC GGATTGGCGCCGGGA pipch1 1493628 - 1492666 - | proline iminopeptidase protein TERM 1380 1493487 - 1493454 - G 80 -5.9 -4.78107 | gap 1, overlap 1493455 1493476 GAGCAGGATCAAAAA GCCGGCGGTGGGCA GGCGAAA TGCCG-CCGCCGGG GCCGCCATGCAGGAA RHE_CH01421 1494101 - 1493625 - | hypothetical protein RHE_CH01422 1494576 - 1494091 - | hypothetical protein TERM 1381 1494157 - 1494185 + g 73 -11 -3.60006 | gap 1, overlap 1494158 GTGCTGATGGTTGCT TGCCGCGATCGCG TCCT CGCGGTCG-GGCG TTTCAGGCTCTGCTT RHE_CH01423 1495061 - 1494582 - | hypothetical protein TERM 1382 1494926 - 1494910 - G 70 -10.1 -3.59979 | CGCGTCCACTCGAAA TCGGCGC CGC GCACCGA GACCAGCGGCGCATA RHE_CH01424 1495672 - 1495058 - | hypothetical protein cysS 1497050 - 1495674 - | cysteinyl-tRNA synthetase RHE_CH01426 1497373 - 1498122 + | glycosyl hydrolase, lysozyme protein RHE_CH01427 1498872 - 1498132 - | oxidoreductase protein TERM 1383 1498440 - 1498417 - G 72 -11.6 -3.29263 | opp_overlap 1498404, overlap 1498405 ATAGGCGCTCCAGAA GGGGCGGCAC TTAT GCGCGGCCCC TGACGACAGGATGAC purF 1500441 - 1498951 - | amidophosphoribosyltransferase TERM 1384 1500392 - 1500372 - G 79 -9 -4.12188 | opp_overlap 1500372 CCAGGATTCCGAAAA CGCCGCAT TCCTC ATGCAGCG TATCTCCGTCGAGCG TERM 1385 1500576 - 1500605 + r 100 -14.9 -4.44046 | opp_overlap 1500569 1500570 CTCTGAAACGGCTGA GGTCCGGCGGAGC TGAT GCCCGGCCGGACC TTTATTTCACGTCCC cvpA 1501286 - 1500669 - | colicin V production protein TERM 1386 1501080 - 1501116 + g 76 -8.8 -4.15748 | gap 2, opp_overlap 1501073 1501076 1501071, overlap 1501082 CAGGAAGACGACGGC TGCCGAACCGGCGATCGC GAT GCGGTCGTCG--TCGGTA TATTTTTTCGCATAG radA 1502777 - 1501377 - | DNA repair protein RadA TERM 1387 1503540 - 1503587 + G 74 -6.2 -4.44667 | gap 1, overlap 1503541 CCTGGGCGCGCTTTT CCTGGCTCTCGGCGTCCGCCTTG CGC TAAG-CAGCCGTTGAGGGCCAGC TTTATTCTTCGGCGA RHE_CH01431 1502878 - 1503579 + | LysE family amino acid efflux protein alr 1504590 - 1503589 - | alanine racemase protein TERM 1388 1505472 - 1505457 - g 72 -11.8 -3.34522 | overlap 1505458 ATACGCGGGAACGAA GCGCGG TCGC CCGCGC CCGCGAATACCTGAT RHE_CH01433 1504940 - 1505761 + | AraC family transcriptional regulator azlC 1505830 - 1506549 + | branched-chain amino acid transporter protein (azaleucine resistance) RHE_CH01435 1506546 - 1506848 + | hypothetical protein dnaB 1508369 - 1506873 - | replicative DNA helicase TERM 1389 1507812 - 1507781 - G 85 -14.4 -3.5936 | opp_overlap 1507809 TGGAAATGCCGGAAA GGCCGCCGTCGC GCTCCTTG GCGACGGCCGCC ATGTCGATCGCCAGC TERM 1390 1508691 - 1508672 - R 100 -12.1 -5.8901 | opp_overlap 1508672 1508680 1508682 ACAGAAAACAAAAAA GCCCGGC ACGGCG GCCGGGC TTTCCCTCTCGCGGT TERM 1391 1508672 - 1508691 + r 83 -12.1 -3.7108 | opp_overlap 1508672, overlap 1508680 1508682 ACAGAAAACAAAAAA GCCCGGC ACGGCG GCCGGGC TTTCCCTCTCGCGGT rplI 1509300 - 1508722 - | 50S ribosomal protein L9 RHE_CH01438 1510072 - 1509323 - | hypothetical protein TERM 1392 1510260 - 1510217 - R 71 -4.4 -4.57073 | gap 1, overlap 1510218 GAGCGCGCTGAAAAA CGACGGCTG-CATGCTCGCGC CCA GCACCAGCAGGGCGGCGGTCA ATCCGGCGAGTGCGC TERM 1393 1510442 - 1510421 - R 85 -14.5 -3.47349 | opp_overlap 1510426, overlap 1510414 TCGCGAAAGGGAGAA GGGAAGGCA CGAA TGCCTTCCC TCAAATCTGATTGCG rpsR 1510714 - 1510466 - | 30S ribosomal protein S18 rpsF 1511185 - 1510727 - | 30S ribosomal protein S6 RHE_CH01441 1512532 - 1511489 - | putative oxidoreductase protein TERM 1394 1512142 - 1512126 - G 91 -9.4 -4.54727 | TGGCGGAAATGAAAA TGGCCG CGGTT CGGCCA ATGCACCTGATAGAG TERM 1395 1513244 - 1513195 - g 75 -13.4 -3.01712 | overlap 1513234 CGCCGTCTGCGAAGA GGCTGCCGCCACCGGCGCCTGC CAGATC GCCAACGACAATGGCGGCGGCC AGATCGTCATTTCGG TERM 1396 1513292 - 1513282 - g 73 -8.2 -4.07568 | GGCTGCTGTCGAAAA GGCC GCC GGCC TCGCAACCGACAGGG fabD 1512737 - 1513687 + | [acyl-carrier protein] S-malonyltransferase protein fabG2 1513717 - 1514454 + | 3-ketoacyl-(acyl-carrier-protein) reductase NodG acpP 1514741 - 1514977 + | acyl carrier protein TERM 1397 1515016 - 1514996 - f 79 -10.3 -3.91858 | opp_overlap 1514996 TATATATTTGAGAAA GGGCGGGCC TGG AGTCCGCCC TTTTCTTTTCGGCCT TERM 1398 1514996 - 1515016 + F 100 -11.8 -5.08255 | opp_overlap 1514996 TATATATTTGAGAAA GGGCGGGC CTGGA GTCCGCCC TTTTCTTTTCGGCCT fabF1 1515071 - 1516333 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1399 1517344 - 1517333 - g 72 -7.2 -4.18018 | overlap 1517334 GGTGGCGAGGGAAAA CCGG CGGA CCGG CCGATCTACCAGTCG TERM 1400 1517488 - 1517513 + G 95 -10.3 -4.59773 | CCAGGATCTCTATTT CGTCGCCGACG GCAC CGGCGGCCACG TTTTTGCCGCTACGC RHE_CH01446 1516628 - 1517680 + | hypothetical protein TERM 1401 1518414 - 1518467 + G 71 -10.9 -3.53444 | gap 1, opp_overlap 1518426, overlap 1518415 GCCGCCGCGCGCGAT CTCCTGGTGAAAGGCGGGCCTGCCGG GCG CCGGCTGGACTTCCTTGCAC-AGGAA TTTAACCGCGAATCG TERM 1402 1518415 - 1518466 + G 75 -14.4 -2.71924 | gap 1, opp_overlap 1518426, overlap 1518414 CCGCCGCGCGCGATC TCCTGGTGAAAGGCGGGCCTGCCGG GCG CCGGCTGGACTTCCTTGCAC-AGGA ATTTAACCGCGAATC RHE_CH01447 1517700 - 1518587 + | hypothetical protein gmk 1518591 - 1519253 + | guanylate kinase ksgA 1520077 - 1519250 - | dimethyladenosine transferase pdxA 1521105 - 1520077 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1403 1520950 - 1520931 - G 76 -10.7 -3.78329 | TCTCACGAATGGAAA CCGCCAG ATTGAG CTGGCGG GCCCGCAGGGTCAGG TERM 1404 1521014 - 1520993 - G 81 -2.3 -5.1861 | gap 1, overlap 1520994 CCGATCAGGAAAAAA GGCG-GAA GCCCGAG TTCACGCC GCCGCAGCCATGCCA RHE_CH01451 1522056 - 1521112 - | peptidyl-prolyl cis-trans isomerase protein TERM 1405 1522075 - 1522098 + r 75 -13.8 -2.71364 | opp_overlap 1522074 TTGACCTCCCAATAG CGCCGCGAGC CGTT GATCGCGGCG TCCTTACCACAGTGC RHE_CH01452 1524571 - 1522241 - | putative organic solvent tolerance protein OstA RHE_CH01453 1525659 - 1524571 - | putative permease protein TERM 1406 1524623 - 1524597 - G 74 -5.8 -4.45544 | overlap 1524599 CCTGATGAAGCAAAA TAGTCGCGCC CAAGGCC AGCGCGACAA CAACCGGTATCCAGG TERM 1407 1524621 - 1524599 - G 71 -8.4 -3.83437 | overlap 1524597 TGATGAAGCAAAATA GTCGCGCC CAAGGCC AGCGCGAC AACAACCGGTATCCA TERM 1408 1525590 - 1525573 - G 72 -4.1 -4.54404 | gap 1, overlap 1525574 1525575 GAAATCAAGAAGAAA GGCG-ATC GCC GACGCGCC GATCAGAAACCAGCC TERM 1409 1525651 - 1525637 - G 71 -5.6 -4.32678 | CGGCGAAAGAAATAA CGCGAC AAT GTCCCG AACATCATTGGGCCG RHE_CH01454 1526837 - 1525656 - | putative permease protein TERM 1410 1525841 - 1525860 + g 70 -10 -3.55444 | GAACCGCGATATATT CCGGATCG GTGT CGATCTGG TTTGCCGCGTAGAAG TERM 1411 1526519 - 1526502 - G 72 -2.5 -4.80167 | overlap 1526504 GACGAAAAAGGAAAA GACGCTG ATGA CGGCGGC AAGCAGCAGGATCGG TERM 1412 1526879 - 1526855 - R 70 -11.4 -2.90496 | overlap 1526852 CGGCCCTTGAAAGCA CCTGCACGCC CAAAC GGCTTGCAGG AGAATCCCTCTACGC RHE_CH01455 1527710 - 1526937 - | putative phosphatase protein TERM 1413 1527529 - 1527502 - G 76 -8.2 -4.2349 | TCGCGATAGGGAAAA CCGCCGCAGATG CTTC CGGCAGCGGCGG TCGCATCACAATCGG pepA 1527854 - 1529347 + | leucyl aminopeptidase TERM 1414 1529474 - 1529417 - g 76 -7.7 -4.36914 | gap 3, opp_overlap 1529460, overlap 1529391 CGCTCCTCGACAAAA GCATCGAG-CGCGGCTGGCGCG-TCGTC GTCCA GACGAGCGAGGCTG-CGCGGCGCGATGC ACTCGATGCGCATCT RHE_CH01457 1529344 - 1529793 + | DNA polymerase III subunit chi gal 1530765 - 1529839 - | D-galactose-1-dehydrogenase protein TERM 1415 1530845 - 1530822 - R 73 -8.8 -3.96148 | opp_overlap 1530821 1530818 TTCTTGTAGCAGAAA GAGGAGCGCC GACA AGCTCTCCTC CTCCATTCTACTGCA RHE_CH01459 1532905 - 1530863 - | putative peptidase protein TERM 1416 1532132 - 1532115 - G 71 -5.5 -4.28774 | overlap 1532108 CGATTGAACTGAAAA TCGGCCT CTTC AGGCAGA TCGATCCGCCGCTTC RHE_CH01460 1534314 - 1533010 - | putative monooxygenase protein TERM 1417 1533175 - 1533151 - G 81 -4.1 -5.00616 | GCCTCCGGGAAAAAA CGGCGGCATGA CGT TGAAGCCGTCG GCGGCGCGGCTGTCG RHE_CH01461 1535687 - 1534329 - | hypothetical protein TERM 1418 1534684 - 1534657 - G 76 -9.2 -4.07568 | gap 1 GGCTGCCCGTCAAAA TGATCGA-GCCGC AGG GCGCCGTCGATCA GGGCCGCCGCGAACA TERM 1419 1535075 - 1535035 - G 79 -14 -3.53012 | gap 2, opp_overlap 1535030 1535030, overlap 1535020 CCGGCCGCCGCCAAA CGCGCCGACA-GG-AGCCCG GAT CGGGCCGCCATGCCGGCGTG ATAAGGTTTGGCGTC TERM 1420 1535351 - 1535329 - G 95 -9.9 -4.56597 | gap 1, overlap 1535331 GCCTCCGCGGAAAAA CT-GCGCTCG GCAG CGAGCGCCAG CAGAGCTGGAACGAT RHE_CH01462 1536481 - 1535684 - | amino acid ABC transporter ATP-binding protein TERM 1421 1536095 - 1536106 + g 74 -2.2 -4.87665 | TACCTTTTCGAGCAG TTCG CGCG CGAG TTTTTCTGCCTCGCC TERM 1422 1536224 - 1536243 + g 70 -10 -3.64822 | gap 1 GATGCCGACACGCTT GCGCAGCGC AAT GCGCT-CGC TTTCCGTGGCCAACT RHE_CH01463 1537268 - 1536486 - | amino acid ABC transporter permease RHE_CH01464 1538020 - 1537274 - | amino acid ABC transporter permease TERM 1423 1537969 - 1538001 + g 74 -12 -3.39749 | overlap 1537964 1537999 ACTCGTAGTTCAGGC CAAGCCTGTTCGTC AGTTC GACGAACAGGCCGG TTATGCCGTTATTCC RHE_CH01465 1538839 - 1538045 - | amino acid ABC transporter substrate-binding protein RHE_CH01466 1539567 - 1538983 - | TetR family transcriptional regulator TERM 1424 1539344 - 1539315 - G 83 -7.9 -4.66953 | gap 1, opp_overlap 1539316 1539334 CGAAGATCGCAAAAA TGGCCGCC-GCA CCGCCTT TGCCGGCGACCA GCTTCTCCAACTGAT RHE_CH01467 1540388 - 1539717 - | putative polysaccharide deacetylase protein TERM 1425 1540642 - 1540660 + r 77 -10.2 -3.72695 | opp_overlap 1540643, overlap 1540643 CGGAATTGTGCCGAA ACGCGGCA CGT TGCCGCGG TTTCCTCAAGCCACT TERM 1426 1540659 - 1540643 - R 84 -13.7 -3.54459 | opp_overlap 1540643 1540642 GGAATTGTGCCGAAA CGCGGCA CGT TGCCGCG GTTTCCTCAAGCCAC TERM 1427 1540643 - 1540659 + r 76 -13.7 -2.83403 | opp_overlap 1540643, overlap 1540642 GGAATTGTGCCGAAA CGCGGCA CGT TGCCGCG GTTTCCTCAAGCCAC RHE_CH01468 1542563 - 1540680 - | putative ABC transporter, ATP-binding protein TERM 1428 1540957 - 1540980 + g 93 -7.4 -5.22104 | gap 1 TGATCGGCCTTGGAT GTCGCA-TCGG CGG CCGGCTGCGGC TTTTCTTCTTTTTTC RHE_CH01469 1543646 - 1542684 - | hypothetical protein RHE_CH01470 1544384 - 1543875 - | hypothetical protein ligE 1544614 - 1545138 + | beta-aryl ether cleaving enzyme, lignin degradation protein ndk 1545220 - 1545642 + | nucleoside diphosphate kinase TERM 1429 1545709 - 1545691 - T 77 -11.6 -3.5594 | opp_overlap 1545691 AATTGACTCTCGAAA GCCGGGGC CTC GCTCCGGC TTTTTCTATTCCGGT TERM 1430 1545691 - 1545709 + T 100 -13.8 -5.09762 | opp_overlap 1545691 AATTGACTCTCGAAA GCCGGGGC CTC GCTCCGGC TTTTTCTATTCCGGT RHE_CH01473 1546229 - 1545726 - | hypothetical protein RHE_CH01474 1546771 - 1546226 - | hypothetical protein TERM 1431 1547638 - 1547650 + G 76 -10.5 -3.83026 | TCGAAACCATGTGGG GCGCC TAT GGCGC TTTCGTCTGGCGGGA RHE_CH01475 1546836 - 1547732 + | branched chain amino acid ABC transporter permease moaE 1548195 - 1547734 - | molybdopterin converting factor subunit 2 protein moaD 1548708 - 1548454 - | molybdopterin converting factor subunit 1 protein pgsAch 1549295 - 1548705 - | CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein TERM 1432 1548855 - 1548827 - G 89 -10.9 -4.3208 | overlap 1548828 TTGTATAAGGGAAAA TCTCGTCGCCGGC CGG GCCGGCAAGGAGG AAGGCGATGGCGACG TERM 1433 1548854 - 1548828 - G 80 -14.4 -3.18766 | overlap 1548827 TGTATAAGGGAAAAT CTCGTCGCCGGC CGG GCCGGCAAGGAG GAAGGCGATGGCGAC uvrC 1551498 - 1549459 - | excinuclease ABC subunit C TERM 1434 1550224 - 1550196 - G 76 -13.9 -3.12351 | opp_overlap 1550223 GCGGCGCATAGGCAA GCCCGAAGGTTTC CTT GAAGCCTTCGAGC AGCCGTGACTGCGAC RHE_CH01480 1552262 - 1551495 - | short chain dehydrogenase ropB1 1552627 - 1553262 + | outer membrane protein TERM 1435 1553288 - 1553306 + T 100 -13.1 -5.4505 | opp_overlap 1553281 1553279 1553288, overlap 1553298 CAGAAATACGAGGAA GCCGGGC ATGTC GCCCGGC TTTTTTGTTGGCGCG TERM 1436 1553306 - 1553288 - T 81 -13.8 -3.31691 | opp_overlap 1553288 1553298, overlap 1553281 1553279 CAGAAATACGAGGAA GCCGGGCA TGT CGCCCGGC TTTTTTGTTGGCGCG gstch7 1553942 - 1553346 - | glutathione S-transferase protein RHE_CH01483 1554868 - 1553999 - | putative DNA methylase protein TERM 1437 1554365 - 1554392 + g 74 -6.2 -4.4078 | gap 1, overlap 1554367 GTTCTCTTCCTCGAA GGGCGG-ATCGAC GAG GACGATGCCGCGC TTTTCCTTCGGCGGC TERM 1438 1554681 - 1554699 + g 74 -5.8 -4.43189 | ATCAATTTGCCGATG CCGGCCTG CCA CTCGCCGG TTTTCTGCGCTTCCT TERM 1439 1554736 - 1554776 + g 82 -6 -4.89852 | opp_overlap 1554733, overlap 1554737 AGAGGTCATAGAGGC CGATGCCGGCATGCGTGT CGAGC ACGCGGAAGCCGCCATCC TTTTTCTGCATGTAA TERM 1440 1555363 - 1555391 + G 75 -2.9 -4.9218 | opp_overlap 1555361 GCGATTCAATCGACC GCCTGCGTCACGC CAA GCGCTATTCGGGC TTTTTCTCGTCGATC RHE_CH01484 1554951 - 1557089 + | anaerobic dehydrogenase protein TERM 1441 1557137 - 1557114 - g 79 -8.1 -4.29396 | AATCACGCATGAAAA TCGTCAGCG AGCAAA CGCTGTCGA ATGGCTGGACACGGT TERM 1442 1557419 - 1557429 + G 71 -8.2 -3.93038 | overlap 1557418 ACTGGTTACCACCTG CGCG ACG CGCG TTTCCTCTTCAAATG RHE_CH01485 1557086 - 1557676 + | putative ADP-ribose pyrophosphatase protein TERM 1443 1557685 - 1557721 + F 71 -8.8 -3.7108 | gap 2, overlap 1557684 GCGATAGCGGATGAG CGGTCTCGAG--CGACCC GCT GGGTTGGACTCGAGACGG TTTCGCTATCGCGGT TERM 1444 1557914 - 1557969 + G 71 -9 -3.78022 | gap 4, opp_overlap 1557910 1557909 ATCGCCGAAATCCGG CCGGAGC--CGGTCGCCG-GCGCCGCCA TCGA TGGCGGCGGGCGGCTGCTGATGC-CCGG TTTCGTCGATCTGCA TERM 1445 1558558 - 1558532 - g 88 -8.7 -4.69664 | overlap 1558534 GACAGTATCGAAAAA GTCGCCGAAAT GCACG ATCTCGGCGTC ACCATCAGCGAGTTT phnM2 1557821 - 1558990 + | phosphonate metabolism protein purN 1559658 - 1558987 - | phosphoribosylglycinamide formyltransferase purM 1560728 - 1559655 - | phosphoribosylaminoimidazole synthetase TERM 1446 1560614 - 1560641 + g 82 -11.2 -3.97088 | gap 1, opp_overlap 1560581 TCTCGCCGTCGGCGC CCGGACGGCGCGT CGA GCGCACCG-CCGG TTTGATCTTCTCGAC RHE_CH01489 1560972 - 1562096 + | putative permease protein RHE_CH01490 1562089 - 1562802 + | hypothetical protein ppk 1562867 - 1565071 + | polyphosphate kinase ppx2 1565083 - 1566603 + | exopolyphosphatase protein TERM 1447 1566827 - 1566808 - T 100 -12.8 -5.48825 | opp_overlap 1566807 1566808, overlap 1566786 GAGCATCCAAAAAAA GGCGGCGC TCGC GCACCGCC CTTCCTATTCTGTTT RHE_CH01493 1568213 - 1566855 - | hypothetical protein TERM 1448 1566977 - 1566993 + g 72 -8 -4.21194 | opp_overlap 1566988 TGATGATGTGCGTGG CGTCGA CACGA TCGACG TTTTCGATCGTCACG cyaB 1569381 - 1568320 - | adenylate cyclase protein rnd2 1570606 - 1569461 - | RNase D protein TERM 1449 1569580 - 1569547 - G 70 -7.3 -4.07568 | gap 1 CCGGCTCGCCGAAAA GATCGCGCCG-CCAGC CGT GCAGGGCGGCGACATC GGCCTTCTCGCCATC RHE_CH01496 1572127 - 1570736 - | metallo-oxidoreductase protein TERM 1450 1571011 - 1571047 + g 72 -7.2 -4.24342 | gap 2 TCAGTTCCGCCAGCG GCGCCGTCGGATCGGGGG TGT CGCCCGG-CC-ACGGCAC TTTGTTAATCGCCCA TERM 1451 1571469 - 1571492 + g 78 -15.2 -2.74523 | overlap 1571466 TTGGCGATGCGCAGC CGCGCCAGCC CGCC GGCCGGCGCG TCATATTGCGGCTCC TERM 1452 1572931 - 1572951 + G 74 -5.3 -4.64766 | overlap 1572928 1572933 CGACTTCCTCGTGCC GAGCCGG ATTCATC CCGGCAC TTTTTACGCTCTGCC TERM 1453 1573532 - 1573510 - g 76 -9.8 -3.90922 | ACCGCTTGCAAAGAA CATCGGCGAG GAG CGCACCGATG CGATCCGCACTCAGC TERM 1454 1573970 - 1573996 + G 79 -11.5 -3.83026 | gap 1 CGAGCCTTTCAGTAT GGC-GCGCCCCC GCAC GGCGGCGCTGCC TTTGGTATCGACCGC aspS 1572365 - 1574173 + | aspartyl-tRNA synthetase TERM 1455 1574223 - 1574200 - T 81 -10.2 -4.05446 | opp_overlap 1574201, overlap 1574201 TTTTCGAATGAGAAA GCCCGGCGAC CGCA ATCGCCGGGT TTTTCATTTGTGCCG TERM 1456 1574201 - 1574222 + T 100 -13 -5.04601 | opp_overlap 1574201 1574200 TTTCGAATGAGAAAG CCCGGCGA CCGCAA TCGCCGGG TTTTTCATTTGTGCC TERM 1457 1574222 - 1574201 - T 77 -13.7 -3.02946 | opp_overlap 1574201, overlap 1574200 TTTCGAATGAGAAAG CCCGGCGAC CGCA ATCGCCGGG TTTTTCATTTGTGCC TERM 1458 1574289 - 1574265 - T 100 -17.9 -4.32857 | opp_overlap 1574262 1574265 TGCCTGAAATAGAAA GGCTCGGCAGC GGA ACTGCCGAGCC TGCTCTCATGAAGGA TERM 1459 1574265 - 1574289 + T 86 -17.2 -2.66316 | opp_overlap 1574265, overlap 1574262 TGCCTGAAATAGAAA GGCTCGGCAG CGGAA CTGCCGAGCC TGCTCTCATGAAGGA RHE_CH01498 1575502 - 1574315 - | hypothetical protein TERM 1460 1575480 - 1575458 - G 77 -4.1 -4.87665 | gap 1, opp_overlap 1575462 GGCGAGCGAGAAAAA GGCTG-CGCC CGAC AGCATCAGCC GCGTTGTCCGATAAA TERM 1461 1577216 - 1577199 - g 70 -10.5 -3.60475 | overlap 1577191 1577190 1577203 AAGAAATTCGCTAAA GCGACCG AGGT CGGCCGC CGCCGCACCCAGTTC TERM 1462 1577534 - 1577549 + G 76 -10.4 -3.86897 | opp_overlap 1577528 1577531 CATGGACAACGATCA GGCGGT GCTG ACCGCC TTTGTCCACGATCCC parC 1575738 - 1577993 + | DNA topoisomerase IV subunit A RHE_CH01500 1578779 - 1578105 - | hypothetical protein RHE_CH01501 1579767 - 1578952 - | putative permease protein TERM 1463 1579032 - 1579061 + g 83 -15 -3.53444 | TTGCCGTCAGGATGC CGCCGCCGACGA GTGTCA TCGTCGCCGGCG TTTCGGCAAAGATCA ate 1580616 - 1579840 - | arginyl-tRNA-protein transferase TERM 1464 1579923 - 1579880 - G 73 -11 -3.54741 | gap 1, opp_overlap 1579879 1579876 GAGGAGGGGTCGAAA CGTTCCCAGCCGCGCGGGG TCAGATG CTCCT-GCGGCTGGAAACG CGTCTTATAATCCAT RHE_CH01503 1581256 - 1580798 - | hypothetical protein hemB 1582344 - 1581331 - | delta-aminolevulinic acid dehydratase TERM 1465 1581586 - 1581621 + g 71 -11 -3.52192 | overlap 1581590 CATCAGCATGTCGGC GCCTTCCTCGACGTCG AGGG CGGCGTCGCGGATCGC TTCTGTGCCGTTGGC TERM 1466 1581590 - 1581617 + g 71 -13.4 -2.63257 | overlap 1581586 AGCATGTCGGCGCCT TCCTCGACGTCG AGGG CGGCGTCGCGGA TCGCTTCTGTGCCGT TERM 1467 1581761 - 1581809 + g 86 -18.2 -2.63596 | gap 1 ATGCCGACACTCTGG TGGCCGGCCGCATCGAGCGCCAT ACGG ATGGCGC-CAATGCGCCCGTCCA TCATCTCCGATGGGG RHE_CH01505 1582390 - 1582914 + | hypothetical protein RHE_CH01506 1583044 - 1583559 + | MarR family transcriptional regulator TERM 1468 1583616 - 1583592 - f 82 -8.5 -4.63932 | opp_overlap 1583592 1583614 CAGGGTTGAAGAAAA CCGGATGCG TTCCCTG CGCGTCCGG TTGTGCCGTTTGCGC TERM 1469 1583592 - 1583616 + F 75 -11.4 -3.39668 | opp_overlap 1583592, overlap 1583614 CAGGGTTGAAGAAAA CCGGATGCGT TCCCT GCGCGTCCGG TTGTGCCGTTTGCGC TERM 1470 1584981 - 1584957 - g 84 -4.2 -5.18726 | gap 1 CTTCTACAACAAAAA CGGCGAGTACA TGCA CG-ACACGCCG CAGCAGGGCCTGTTC RHE_CH01507 1583995 - 1585296 + | putative peptidoglycan binding protein (involved in cell wall degradation) TERM 1471 1585325 - 1585343 + F 100 -13.1 -6.35605 | CATCGCACCCTCGAA CCGCGCC CTCCC GGCGCGG TTTTTTTTTATGTTG TERM 1472 1585717 - 1585695 - g 73 -6.3 -4.27441 | gap 1, opp_overlap 1585711, overlap 1585697 ATCATGACCAACAAA TATGCCGAGG GTTA CCCCGGCA-A GCGCTATTACGGCGG TERM 1473 1585716 - 1585697 - g 76 -11.4 -3.73445 | opp_overlap 1585711, overlap 1585695 CATGACCAACAAATA TGCCGAGG GTTA CCCCGGCA AGCGCTATTACGGCG TERM 1474 1586101 - 1586119 + G 70 -10.2 -3.56273 | overlap 1586102 AGCGCTTCCGCGAGA TCGCCGAC TCG GTCGGCGC TTATCTGATGGTCGA TERM 1475 1586102 - 1586118 + G 72 -13.7 -2.73443 | overlap 1586101 GCGCTTCCGCGAGAT CGCCGAC TCG GTCGGCG CTTATCTGATGGTCG glyA 1585515 - 1586813 + | serine hydroxymethyltransferase TERM 1476 1586910 - 1586867 - g 72 -13.8 -2.73681 | gap 1, opp_overlap 1586869 TACTCAGGTCAAGGA TTCGCGCCCGGCGGA-GGACA ATA CGTCCATCCGCCGGCGGCGTA TCTGTCCGGATTGCG TERM 1477 1586869 - 1586908 + G 81 -15.7 -2.99947 | gap 1, opp_overlap 1586867 CTCAGGTCAAGGATT CGCGCCCGGCGGA-GGAC AATAC GTCCATCCGCCGGCGGCG TATCTGTCCGGATTG RHE_CH01509 1586823 - 1587299 + | transcriptional regulator NrdR ribD 1587303 - 1588610 + | 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedeaminase protein ribE 1588610 - 1589221 + | riboflavin synthase subunit alpha RHE_CH01512 1590209 - 1589340 - | glucose-1-phosphate thymidylyltransferase protein TERM 1478 1589957 - 1589943 - G 73 -7.1 -4.30719 | overlap 1589944 GGCGCCGATAATAAA GGCCT GGGCG AGGCC GTCCGGGCTCGGCTG rfbD 1591106 - 1590219 - | dTDP-4-dehydrorhamnose reductase protein TERM 1479 1590896 - 1590886 - G 74 -4.6 -4.67353 | GCATTGACGGAAAAA GCCA GCT CGGC TTCGCTCTCGGCCTT rffB 1592165 - 1591110 - | dTDP-glucose-4,6-dehydratase protein RHE_CH01515 1592750 - 1592172 - | dTDP-rhamnose-3,5-epimerase protein RHE_CH01516 1594587 - 1592740 - | hypothetical protein RHE_CH01517 1594870 - 1596030 + | putative nucleotide sugar transaminase protein TERM 1480 1596227 - 1596195 - T 90 -16.3 -3.28791 | opp_overlap 1596195, overlap 1596199 ACCGGCTGCTCACAA GAAAGCGGCGTGGCC ATC GATCACGCCGCTCTC TTTATCTTGTAGAGG TERM 1481 1596195 - 1596227 + T 100 -14.1 -4.27117 | opp_overlap 1596195 1596199 ACCGGCTGCTCACAA GAAAGCGGCGTGGCC ATC GATCACGCCGCTCTC TTTATCTTGTAGAGG TERM 1482 1596223 - 1596199 - T 95 -13.5 -4.30719 | opp_overlap 1596195, overlap 1596195 GCTGCTCACAAGAAA GCGGCGTGGCC ATC GATCACGCCGC TCTCTTTATCTTGTA RHE_CH01518 1597462 - 1596248 - | putative oxidoreductase protein RHE_CH01519 1598652 - 1597459 - | putative carbamoyl-phosphate-synthetase protein TERM 1483 1597920 - 1597940 + g 71 -12.5 -3.01712 | CGAGCAGCTTGACCA CGCGCGCCA TAA TGGCCCGCG TCTTCGAACGGACAG TERM 1484 1598146 - 1598106 - G 77 -14 -3.30159 | opp_overlap 1598099, overlap 1598109 TGAATTCCTCGATAA CGATCTCCGCCGCCCG-CGA GTT TCGGCGGGCGTCGGCGA-CG GCGTCGGTAAGTTCT TERM 1485 1598144 - 1598109 - G 79 -15.4 -2.82742 | gap 1, opp_overlap 1598099, overlap 1598106 ATTCCTCGATAACGA TCTCCGCCGCCCG-CGA GTT TCGGCGGGCGTCGGCGA CGGCGTCGGTAAGTT RHE_CH01520 1601189 - 1598817 - | putative beta-D-1,6 glucosyltransferase protein TERM 1486 1601149 - 1601125 - G 85 -5.6 -5.01497 | ACGATGACAGAAAAA GACGCCTGCA CGATC TGCCCGCGTC CCCCGAAACCCGCCA RHE_CH01521 1602193 - 1601297 - | putative glucosyltransferase protein TERM 1487 1602242 - 1602212 - R 70 -9.7 -3.53012 | gap 1 TTTCTCCCCTTGAAA CGCTTCTCTCCAGC CTCA GCCGGCGAG-AGCG GTGATCGCCTCCCCG TERM 1488 1602364 - 1602335 - R 82 -5.7 -4.91459 | gap 1, overlap 1602326 1602337 GAAGAGGCAGAAAAA TCG-GCAAAAGACG CCG CGGCTCTCGCCCGA TAGACAAATGATTGC RHE_CH01522 1603001 - 1602486 - | putative acetyltransferase protein TERM 1489 1602685 - 1602667 - G 72 -11.6 -3.28712 | GCCTCTGTGGCATAA CCGCGGCC GTG GGCTGCGG GCATCAGCGCCCAGC TERM 1490 1602958 - 1602976 + g 76 -5.9 -4.62783 | TCGAGGCGGTGAGGA CGAAGCG TCAGC CGCTCCG TTTTTAGGGTGGGTA RHE_CH01523 1603529 - 1603026 - | hypothetical protein TERM 1491 1603613 - 1603643 + r 85 -14 -3.53012 | opp_overlap 1603608 1603607 1603632 CCGGGAAAATCCTCG GCATGGGCGGAG AGGAGAA CGCCGCCCATGC TTTCGAGCGCCGCGC RHE_CH01524 1604066 - 1603707 - | hypothetical protein TERM 1492 1604259 - 1604206 - H 83 -9.6 -4.25848 | opp_overlap 1604206, overlap 1604207 1604254 AATTCTTCATGAAAA CGGCCTTCGAATTGCCGTTTTCCG CGCTTC CGGCAAACGGCAATTCAAGAGCTT GGCCGGCTCGGCAGG TERM 1493 1604258 - 1604207 - H 75 -13.1 -3.15027 | opp_overlap 1604206, overlap 1604206 1604254 ATTCTTCATGAAAAC GGCCTTCGAATTGCCGTTTTCCG CGCTTC CGGCAAACGGCAATTCAAGAGCT TGGCCGGCTCGGCAG ribH 1604413 - 1604868 + | riboflavin synthase subunit beta nusB 1604872 - 1605354 + | transcription antitermination protein NusB TERM 1494 1606198 - 1606241 + G 81 -15.2 -3.02511 | opp_overlap 1606188 1606198 1606199 AACGATTGCCGATAA CGTCGGCGACAATGTCGGCG ACTG CGCCGGTATGGCCGCCGACC TCTTCGAGACCTACG TERM 1495 1606241 - 1606198 - g 74 -13 -3.30619 | opp_overlap 1606198, overlap 1606188 1606199 AACGATTGCCGATAA CGTCGGCGACAATGTCGGCG ACTG CGCCGGTATGGCCGCCGACC TCTTCGAGACCTACG TERM 1496 1606240 - 1606199 - g 80 -16.5 -2.5805 | opp_overlap 1606198, overlap 1606188 1606198 ACGATTGCCGATAAC GTCGGCGACAATGTCGGCG ACTG CGCCGGTATGGCCGCCGAC CTCTTCGAGACCTAC hppA 1605551 - 1607689 + | membrane-bound proton-translocating pyrophosphatase TERM 1497 1607715 - 1607701 - T 70 -11.4 -3.02511 | TTGATGGCTGCAACA GCGGCT GGC AGCCGC TCACCCTAACCCTCT TERM 1498 1607978 - 1607926 - T 80 -15.1 -2.62111 | gap 1, opp_overlap 1607942, overlap 1607942 CGGGTAAAAAACGAG GTTTATCAACAAAAAACCCGCCGG GTCGCT CCGGCGGGTTTTTCGTTGA-ATGC ATGTCCAATCAGCGC TERM 1499 1607963 - 1607942 - T 100 -14.4 -5.5112 | opp_overlap 1607942, overlap 1607926 TTTATCAACAAAAAA CCCGCCGG GTCGCT CCGGCGGG TTTTTCGTTGAATGC TERM 1500 1607942 - 1607963 + T 100 -15.1 -4.88407 | opp_overlap 1607942 1607926 TTTATCAACAAAAAA CCCGCCGGG TCGC TCCGGCGGG TTTTTCGTTGAATGC RHE_CH01528 1608487 - 1607987 - | hypothetical protein TERM 1501 1608731 - 1608717 - H 71 -9.2 -3.71924 | GAAATCATGCAACAA GGCCGG ACG CCAGCC GGCGTGAAGAATGAG TERM 1502 1608813 - 1608794 - H 84 -5 -5.06414 | overlap 1608801 1608803 CTTCCGCAAGAAAAA CAACAATC AGGC GATCGTCG ACAGGCAATATGCGG RHE_CH01529 1608849 - 1609298 + | hypothetical protein RHE_CH01530 1609310 - 1609864 + | hypothetical protein plsX 1609988 - 1611010 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 1503 1611208 - 1611182 - g 79 -15.8 -2.82834 | overlap 1611187 CAGGCGACGACGAGA CGACAGCCTCGC TTG GCGAGGCGGCCG CGCGTGCGGCGCTTG TERM 1504 1611203 - 1611187 - g 74 -13.7 -2.87944 | overlap 1611182 GACGACGAGACGACA GCCTCGC TTG GCGAGGC GGCCGCGCGTGCGGC TERM 1505 1611794 - 1611759 - g 75 -13.4 -3.04799 | gap 1, overlap 1611749 1611793 GACAACCGCGGAAGA CCTCGACTGGC-TGGTG CCG CACCAGGCCAATCGACG CATCATCGACGGTTC fabH 1611031 - 1612002 + | 3-oxoacyl-(acyl carrier protein) synthase III ihfA 1612109 - 1612447 + | integration host factor subunit alpha TERM 1506 1612465 - 1612475 + F 82 -2.4 -5.36441 | TCGGGCTTTGCCTTC CGCG AAA CGCC TTTTTTCTCTCGCGC RHE_CH01534 1612598 - 1613140 + | MerR family transcriptional regulator RHE_CH01535 1613492 - 1613145 - | putative two-component response regulator protein TERM 1507 1614975 - 1615003 + G 70 -12.3 -3.14132 | CGGCAAGGCCGACGC CCGGCTGGCCGCT GCC GGCGCCCAGCCGA TTCCTCAGGGAAGCG RHE_CH01536 1613764 - 1615410 + | putative two-component sensor histidine kinase protein RHE_CH01537 1615761 - 1615447 - | hypothetical protein RHE_CH01538 1615933 - 1616697 + | hypothetical protein RHE_CH01539 1616732 - 1617091 + | insertion sequence transposase protein, ISRM11/ISRM2011-2 element TERM 1508 1617139 - 1617170 + F 86 -11.6 -4.15044 | gap 1, opp_overlap 1617135 1617146, overlap 1617144 CTCGCTGGAAAGCCT GGCAAGACCGCTTCG ATC CGAAGCGG-CTCGTC TTTATTGACGAGACC TERM 1509 1617144 - 1617167 + F 71 -11.8 -2.80244 | gap 1, opp_overlap 1617135 1617146, overlap 1617139 TGGAAAGCCTGGCAA GA-CCGCTTCG ATC CGAAGCGGCTC GTCTTTATTGACGAG TERM 1510 1617164 - 1617146 - f 80 -14.6 -3.03635 | opp_overlap 1617144 1617139 GAAAGCCTGGCAAGA CCGCTTCG ATC CGAAGCGG CTCGTCTTTATTGAC RHE_CH01540 1617201 - 1617680 + | insertion sequence transposase protein, ISRM11/ISRM2011-2 element RHE_CH01541 1618150 - 1617845 - | hypothetical protein TERM 1511 1617930 - 1617916 - Gf 72 -12.8 -2.52933 | overlap 1617915 CCCCAAGCCAGCAAC CGGCGC AGG GCGCCG CGCCCTTGCCGACGC TERM 1512 1619081 - 1619097 + GH 77 -13.7 -3.01712 | GAACGCCGCTTTCTT CTGCGGC TCG GCCGCAG TCTTGAGCCGCAAGG TERM 1513 1619798 - 1619775 - gH 70 -12.4 -2.58544 | overlap 1619774 GCCGAGCCCTATAAG GCCGACGTCA CACT TGTCGTCGGC GGGTGGAACATCATC celA 1618113 - 1620359 + | cellulose synthase protein TERM 1514 1620855 - 1620875 + G 73 -12.5 -3.18199 | AGCAGCGGGTCAGCT CGGCGGACG GCT CTTCCGCCG TTACATTCGAAGTTC TERM 1515 1621592 - 1621609 + G 76 -7.7 -4.38712 | gap 1 CGCGCCAGCTTCAAT GTCG-CCG TGC CGGCCGAC TTTTATGCCAATGCC celB 1620356 - 1622788 + | cellulose synthase protein celC 1622785 - 1623831 + | endoglucanase (glycoside hydrolase) protein TERM 1516 1624301 - 1624263 - g 81 -11.6 -3.85817 | opp_overlap 1624265, overlap 1624264 AGTCGCGGCGACAAA GTGCGCCTGCAGGCCGAA ATC TCCCGCCTACAGGCGCTT TATCCGAACTGGGTT TERM 1517 1624300 - 1624264 - g 79 -15.1 -2.91276 | opp_overlap 1624265, overlap 1624263 GTCGCGGCGACAAAG TGCGCCTGCAGGCCGAA ATC TCCCGCCTACAGGCGCT TTATCCGAACTGGGT TERM 1518 1624265 - 1624299 + G 89 -14.2 -3.86897 | opp_overlap 1624264 1624263 TCGCGGCGACAAAGT GCGCCTGCAGGCCGAA ATC TCCCGCCTACAGGCGC TTTATCCGAACTGGG TERM 1519 1624444 - 1624416 - g 73 -11 -3.54424 | gap 1, opp_overlap 1624430 1624433 GCGGAGCTGCGCAAA GCGATCGCCGACC GTCA GGTCGCCGA-CGC CGGGTGGCAGCCGCC RHE_CH01545 1623960 - 1626179 + | hypothetical protein RHE_CH01546 1626257 - 1626925 + | putative 2-deoxyglucose-6-phosphate phosphatase protein TERM 1520 1626954 - 1626964 + F 82 -2.4 -5.37345 | overlap 1626960 ACTGCTTGCTTTTTG CCGG ATG CAGG TTTTTTCTGCTTGCA RHE_CH01548 1627275 - 1627670 + | hypothetical protein RHE_CH01549 1628655 - 1628023 - | 3-demethylubiquinone-9 3-methyltransferase protein TERM 1521 1628197 - 1628221 + g 76 -5.7 -4.62069 | GAAATGGTCATCCAT CTTGCCGCT CACGGCA AGCGCCAAG TTTTTCCAGTAGCCG TERM 1522 1628519 - 1628537 + g 78 -10.2 -4.08887 | opp_overlap 1628493 1628523, overlap 1628515 CCGCCGGTGCCGCAA CCGAGGTC GAA GACCGCGG TTTCATTTGCCTCCT RHE_CH01550 1629316 - 1629948 + | hypothetical protein RHE_CH01551 1630286 - 1629993 - | hypothetical protein RHE_CH01552 1631538 - 1630357 - | ROK family transcriptional regulator TERM 1523 1631454 - 1631492 + g 75 -3.8 -4.79223 | opp_overlap 1631466, overlap 1631455 1631488 CGCGCGAGATCTTCC CCTTGGCTAACACGGT CCGGATC ACCGCGTTGGTCGAGA TTTTTCGTGCTATGG RHE_CH01553 1631898 - 1633655 + | hypothetical protein RHE_CH01554 1634290 - 1633676 - | acetyltransferase protein TERM 1524 1635020 - 1634978 - g 86 -7 -4.9645 | gap 1, opp_overlap 1635000 ATTACAACAAGAAAA TCCTCGATGA-CGCCGGCA TAGCGC TGCCGAAGACCTTCGAGGA GCTTCTGGCCGATCT RHE_CH01555 1634467 - 1635804 + | sugar ABC transporter, substrate-binding protein TERM 1525 1635853 - 1635806 - f 100 -20.7 -4.55697 | gap 2, opp_overlap 1635815, overlap 1635807 1635809 AGGGTCAGAAATAAA TGACG-CG-GACGCAGGCCGCGA CCGT CCGCGGCCTGCGTCTCGTCGACA TCACCTTAAGAAACC TERM 1526 1635849 - 1635807 - f 100 -22.1 -3.32695 | gap 1, opp_overlap 1635815, overlap 1635806 1635809 GGGTCAGAAATAAAT GACGCGGACGCAGGCCGCGA CCGT CCGCGGCCTGCGTCT-CGTC GACATCACCTTAAGA TERM 1527 1635850 - 1635809 - f 100 -21 -3.22499 | gap 2, opp_overlap 1635815, overlap 1635807 1635806 GTCAGAAATAAATGA CG-CG-GACGCAGGCCGCGA CCGT CCGCGGCCTGCGTCTCGTCG ACATCACCTTAAGAA TERM 1528 1635815 - 1635842 + F 95 -19.9 -2.79183 | opp_overlap 1635807 1635809 1635806 AATAAATGACGCGGA CGCAGGCCGCG ACCGTC CGCGGCCTGCG TCTCGTCGACATCAC TERM 1529 1636427 - 1636438 + G 72 -2.2 -4.71307 | CGCAGTCGGGATCGT TGCC ACCT GGTA TTTCTTTGGTTTTTG RHE_CH01556 1635930 - 1636823 + | sugar ABC transporter, permease protein TERM 1530 1637556 - 1637573 + G 71 -11.3 -3.50853 | opp_overlap 1637547 TCAACACGCCGGTTC TGACCGC CGGT GCGGTCA TTGTCATTGCCCCGC RHE_CH01557 1636823 - 1637656 + | sugar ABC transporter, permease protein RHE_CH01558 1638917 - 1637673 - | hypothetical protein TERM 1531 1638837 - 1638827 - G 79 -8.2 -4.3467 | overlap 1638828 AGCCGGAGAGGAAAA CGCC GAA GGCG ACGAAGGCCGAACCG TERM 1532 1638882 - 1638854 - G 79 -16 -2.53911 | opp_overlap 1638843, overlap 1638843 CGAAGGCCGAACCGA TCAGCCGCAGCG CCGCT CGCTGCGGCTGG GCGACACGCGAATAT RHE_CH01559 1640476 - 1638914 - | glycosyltransferase TERM 1533 1639154 - 1639139 - G 75 -11.8 -3.59738 | overlap 1639119 GACGACATCCGCAAA GGCGCG GTCG CGCGCC TGGGCAAGAACCGCA TERM 1534 1639532 - 1639484 - G 72 -3.8 -4.60487 | gap 2, opp_overlap 1639486 GATCAGTGTGAAAAA GATGTCGAAGCCGCGTTTGGCGAC GGA ATC-CCAGTCGCGGAT-CGGCATC TTGAAAATGTCGAGC RHE_CH01560 1641697 - 1640522 - | glycosyltransferase TERM 1535 1641011 - 1640992 - G 70 -10 -3.61764 | gap 1, opp_overlap 1641000, overlap 1640984 TCATCAACGCTGAAA GCGGCCTGC CGA GCAG-CCGC TCGGTCTTGGCGAAG TERM 1536 1641062 - 1641042 - G 74 -13.3 -3.34988 | overlap 1641040 1641038 GCATCGACAAACAGA TCGGGACCC TTA AGGTCCCGA AGCATCCCGACATAG RHE_CH01561 1642276 - 1641701 - | polysaccharide export system protein TERM 1537 1641769 - 1641785 + g 72 -7.9 -4.19624 | overlap 1641768 ATATGTTGATGCGGC CGGTCAG GAC CTGTCCG TTTATCTTGCGGGTG TERM 1538 1643778 - 1643804 + G 74 -13 -3.29144 | opp_overlap 1643768 AGGTAGTGCCGATCG TCGTCGTCGCGA CCG TCGCGACGCTGA TTCTGAGCGCCATCG TERM 1539 1644032 - 1644021 - g 72 -7.2 -4.20783 | overlap 1644022 ACGTGATCGAAGAAA CGGC GGCT GCCG AAGAGACGCCGGAGG RHE_CH01562 1642466 - 1644640 + | polysaccharide transporter TERM 1540 1644733 - 1644702 - T 70 -2.8 -4.68511 | opp_overlap 1644710 1644712 CGCAAGACAAAGAAA GCTCAGCCGATCCG TGCG CGGATGTTCTGGGC GAATTTATAGAGCTT RHE_CH01563 1645843 - 1644704 - | hypothetical protein RHE_CH01564 1646272 - 1646063 - | hypothetical protein TERM 1541 1647060 - 1647090 + G 72 -2.6 -4.7373 | gap 1, overlap 1647061 TGTTCCAGATCTATC TCGGCGCTTTGGT GGCGGG ACTAGA-CGCCGG TTTTTCCTACAATAC TERM 1542 1647422 - 1647442 + G 81 -10.4 -4.14739 | gap 1 GTTGTATTCGGTTTC GCCGTCGCC AACT GGCG-CGGC TTTTACGGTGAATAC RHE_CH01565 1646387 - 1647490 + | cytochrome-c oxidase protein RHE_CH01566 1648304 - 1647513 - | hypothetical protein argC 1649241 - 1648309 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 1543 1648742 - 1648756 + g 72 -7.8 -4.2349 | overlap 1648743 GGCGCGGTGATCGCA TCCGGA TGA TCCGGG TTTTCCATCTGCGCG speB1 1650331 - 1649303 - | agmatinase floR 1651690 - 1650500 - | florfenicol/chloramphenicol resistance transporter protein TERM 1544 1651766 - 1651795 + r 82 -13.7 -3.44146 | opp_overlap 1651765 1651778 TTTGCTGGGACAGAT GCCGCAACAAC AGCGCAAA GTTGTTGCGGC TTAGTTGTCCGCGGA TERM 1545 1651966 - 1651949 - R 100 -14.1 -4.19177 | opp_overlap 1651949 ACGCCCCAACAGAAA GGCCGGG TTTC CCCGGCC TTCGTAATTCCGTCT TERM 1546 1651949 - 1651966 + r 83 -14.1 -3.28537 | opp_overlap 1651949 ACGCCCCAACAGAAA GGCCGGG TTTC CCCGGCC TTCGTAATTCCGTCT rpsI 1652460 - 1651993 - | 30S ribosomal protein S9 rplM 1652927 - 1652463 - | 50S ribosomal protein L13 TERM 1547 1653041 - 1653016 - R 87 -9.7 -4.59853 | opp_overlap 1653019 1653020 1653034, overlap 1653020 CGAACCTGCCAAAAA GAAAGCAGCCC GGAC AGGCTGCGTTC TGGCGCGGTGTATAA TERM 1548 1653037 - 1653020 - R 90 -9.1 -4.85782 | opp_overlap 1653019 1653020 1653034, overlap 1653016 CCTGCCAAAAAGAAA GCAGCCC GGAC AGGCTGC GTTCTGGCGCGGTGT RHE_CH01572 1654119 - 1653220 - | LysR family transcriptional regulator RHE_CH01573 1654503 - 1655330 + | enoyl-CoA hydratase RHE_CH01574 1656260 - 1655331 - | putative transporter, permease protein TERM 1549 1656054 - 1656030 - Gf 83 -11.3 -3.96291 | overlap 1656021 CAGAAATGCCAGAAA CGGCAACGCGG ACA CTGCGCCGCCG GCCGAAATCAAAGCC RHE_CH01575 1656255 - 1656575 + | hypothetical protein RHE_CH01576 1657074 - 1657502 + | hypothetical protein RHE_CH01577 1657620 - 1658903 + | O-acetylhomoserine aminocarboxypropyltransferase TERM 1550 1659563 - 1659578 + T 100 -6.8 -5.95539 | CAGTAACGTGGTATT GGGTGC CGTT GCACTC TTTTTTTATTTGAAA RHE_CH01578 1659928 - 1659686 - | hypothetical protein RHE_CH01579 1660562 - 1660756 + | hypothetical protein RHE_CH01580 1661428 - 1662015 + | hypothetical protein TERM 1551 1662237 - 1662227 - g 71 -8.2 -3.88291 | overlap 1662228 TACGATGTTGAGAAA CGGC GAC GCCG TCATCGCGATCAATT RHE_CH01581 1662108 - 1662485 + | putative glyoxalase protein TERM 1552 1662648 - 1662669 + F 74 -2.9 -4.88067 | overlap 1662662 1662663 1662666 CCCTTTCTTTAGTTT CCGCTAC TTCGCGTT GGAGCGG TTTTTATCGCTCGGT RHE_CH01582 1662765 - 1663076 + | hypothetical protein RHE_CH01583 1663264 - 1663605 + | hypothetical protein TERM 1553 1664386 - 1664366 - g 87 -6.1 -5.24129 | opp_overlap 1664380, overlap 1664350 1664367 1664368 CCTTTCGAGAAAAAA GGCGAGCTT CCG AAGCTCAGC GTGCTGAGCTTCTAC RHE_CH01584 1663823 - 1665949 + | putative sensory box/GGDEF family protein RHE_CH01585 1667255 - 1666011 - | cytochrome P450 hydroxylase protein RHE_CH01586 1668754 - 1667408 - | putative sensory box/GGDEF family protein clpP 1669050 - 1669679 + | ATP-dependent Clp protease proteolytic subunit clpX 1669980 - 1671257 + | ATP-dependent protease ATP-binding subunit TERM 1554 1671259 - 1671239 - f 76 -5.4 -4.71426 | gap 1, opp_overlap 1671239 CCGCCAGGAAGAAAA GGCCAACGC TTCG GCGT-GACC TTGTTCGGCGTGACC TERM 1555 1671299 - 1671321 + F 100 -17 -4.32857 | CGCACCATTATTTTG GGGGCTTGCC ATC GGCAGGCCCC TTTCTATTTGAAAAA TERM 1556 1671979 - 1671998 + G 75 -2.8 -4.83169 | gap 1, overlap 1671980 CGTGCCGAGATCGAC ACCTACACG AGC CGTG-AGGA TTTTTATGAGGCGCT TERM 1557 1672287 - 1672261 - g 91 -9.4 -4.57073 | overlap 1672263 CAGCGTCTCGAAAAA GCTCTCGGCTTC ATG GAAGGCGAGATC TCGGTCCTGCAGGTC TERM 1558 1673864 - 1673839 - g 80 -5.3 -4.8622 | gap 1, opp_overlap 1673861, overlap 1673840 GGTCTCAAGGAAAAA CTGCTCGCAGCG CTT CGCGGCG-GCAT CAAGAAGGTGCTGAT lon 1671670 - 1674087 + | ATP-dependent protease LA protein TERM 1559 1674154 - 1674135 - f 100 -15 -4.23434 | opp_overlap 1674135 CAAAAGACGCGAAAA GGCTGGCG GAAA CGCCAGCC TTTTTTGTGAAAACG TERM 1560 1674135 - 1674154 + F 100 -15 -5.24129 | opp_overlap 1674135 CAAAAGACGCGAAAA GGCTGGCG GAAA CGCCAGCC TTTTTTGTGAAAACG hrm 1674294 - 1674569 + | nucleoid DNA-binding protein TERM 1561 1674618 - 1674640 + F 100 -17 -5.46706 | TGAGCAGGATTTCGA GGGGTTCGGC ACT GCCGGACCCC TTTTTGTTTTGCCCT RHE_CH01591 1674987 - 1675682 + | putative permease protein TERM 1562 1675829 - 1675819 - f 76 -6.8 -4.56775 | overlap 1675821 ATGCGTCGGGAAAAA CAGG CGG CCTG ACGCCGACCCTCTGA TERM 1563 1675889 - 1675848 - f 78 -13.1 -3.29511 | gap 1 CCGACCCTCTGATAA TCTTGCGGG-CTGTCATGTC TCT GTCATGGCAGTCCCGCAAAA CCCCTCTGTTCGATC TERM 1564 1675940 - 1675963 + G 72 -12.4 -3.33492 | TGACAATTTCATCCC GCAAGGCAGC ACTC GCTGCCGTGC TTCTCGCATCCGTCG TERM 1565 1675979 - 1676002 + G 76 -9.4 -4.08216 | overlap 1675990 1675993 TTCTCGCATCCGTCG CCGTCCCGGC TGCG GCCGAGCCGG TTTTCAACCGCATCG TERM 1566 1676341 - 1676322 - g 73 -3.6 -4.7497 | gap 1, opp_overlap 1676340, overlap 1676325 CGTAGCGACGAAAAA GATCG-AGA ACA CCTGCGATC TCGGCGGCCAGCCGG RHE_CH01592 1675924 - 1678122 + | putative alkaline phosphatase protein TERM 1567 1678147 - 1678172 + T 74 -12.5 -2.76696 | opp_overlap 1678144 1678148, overlap 1678146 1678150 GACGGCACATAATGA AGAGGCCGGGT GAAA GCCCGGCCTCC GTTGTTAGAAGACCC TERM 1568 1678171 - 1678148 - T 88 -15.3 -3.49886 | opp_overlap 1678147 1678146 1678150, overlap 1678144 ACGGCACATAATGAA GAGGCCGGG TGAAAG CCCGGCCTC CGTTGTTAGAAGACC TERM 1569 1678150 - 1678169 + T 73 -12.8 -2.6563 | opp_overlap 1678148 1678144, overlap 1678147 1678146 GGCACATAATGAAGA GGCCGGGT GAAA GCCCGGCC TCCGTTGTTAGAAGA TERM 1570 1678220 - 1678183 - T 100 -20.7 -3.28712 | overlap 1678185 CCTCCGTTGTTAGAA GACCCCTGCCCACAAGG GACC CCTTGTGGACAGGGGTT GGGGGTAAGCCCTAC TERM 1571 1678218 - 1678185 - T 100 -23.3 -3.21276 | overlap 1678183 TCCGTTGTTAGAAGA CCCCTGCCCACAAGG GACC CCTTGTGGACAGGGG TTGGGGGTAAGCCCT RHE_CH01593 1679218 - 1678232 - | oxidoreductase protein RHE_CH01594 1679307 - 1679765 + | hypothetical protein RHE_CH01595 1680487 - 1679771 - | hypothetical protein TERM 1572 1680310 - 1680357 + g 76 -8.3 -4.2008 | gap 1 GGGCATTTTCCATGT GGTGGGCGCTGAGCGGCGTGCG CGGCA TGCTGGCC-CTGAGCGCCTGCC TTTCTTCACGTGTCT RHE_CH01596 1680542 - 1680904 + | hypothetical protein btuE 1681033 - 1681581 + | glutathione peroxidase protein TERM 1573 1681657 - 1681625 - T 71 -9.1 -3.727 | overlap 1681627 GCGATGATATGCAAA GACGCTGCTTGGGCT CAG ATCCCAAGCACGGTC ACCAGCGGCGGCGTA RHE_CH01598 1682418 - 1681879 - | hypothetical protein nuoA1 1683077 - 1683442 + | NADH dehydrogenase subunit A nuoB1 1683433 - 1684017 + | NADH dehydrogenase subunit B TERM 1574 1684333 - 1684284 - g 73 -11.5 -3.61398 | opp_overlap 1684287, overlap 1684287 GCTGTCGCCGAAGAA GAACCTGCGCATCCGCGTC AAGGTCGCAACG GACGAGGATACGCCGGTTC CCTCCGCCTGCGCCG nuoC1 1684036 - 1684638 + | NADH dehydrogenase subunit C RHE_CH01605 1684736 - 1685071 + | hypothetical protein nuoD1 1685131 - 1686321 + | NADH dehydrogenase subunit D RHE_CH01607 1686321 - 1686593 + | hypothetical protein nuoE1 1686610 - 1687767 + | NADH dehydrogenase subunit E nuoF1 1687778 - 1689082 + | NADH dehydrogenase I subunit F TERM 1575 1689197 - 1689177 - g 76 -8.9 -4.10657 | overlap 1689178 CGAGATGCTGGAAAA CGCACGGGC GAT GCCTGTGCA TCCGCTGATGGCGCA TERM 1576 1689355 - 1689311 - g 83 -14.2 -3.53563 | gap 1 AGAGCGCGCTGGAAA CGACCGGCAAGCTTGCCGCCG CCCT CGACGACACGC-CGCCGGACG AGCCGATGCCCGATG RHE_CH01610 1689085 - 1689786 + | hypothetical protein nuoG1 1690010 - 1692091 + | NADH dehydrogenase subunit G nuoH1 1692104 - 1693147 + | NADH dehydrogenase subunit H nuoI 1693188 - 1693679 + | NADH dehydrogenase subunit I TERM 1577 1693800 - 1693783 - f 73 -8.3 -4.18197 | ATCGGGCAGGGAAAA CTCCCGG CTGC CCGGGGG AAGATGAAAAAGGCA nuoJ 1693821 - 1694435 + | NADH dehydrogenase subunit J nuoK1 1694459 - 1694767 + | NADH dehydrogenase subunit K TERM 1578 1695260 - 1695289 + G 74 -9.9 -3.78775 | opp_overlap 1695260, overlap 1695263 CTTCTGGTTCAAGAA GCCTTCGGCGACG GCCG CGGCGATGAAGGC TTTCATCGTCAACCG nuoL 1694775 - 1696775 + | NADH dehydrogenase subunit L nuoM1 1696775 - 1698286 + | NADH dehydrogenase subunit M nuoN1 1698305 - 1699750 + | NADH dehydrogenase subunit N TERM 1579 1700482 - 1700502 + G 81 -3.9 -5.08824 | overlap 1700466 1700484 GCTGGCAGGATTGTG CCCATTGCC GCC GGTGATGTG TTTTTTGGATAGCGG birA 1699750 - 1700514 + | biotin--[acetyl-CoA carboxylase] synthetase protein RHE_CH01620 1700589 - 1702202 + | putative metallo-beta-lactamase family protein RHE_CH01621 1702205 - 1702609 + | putative lactoylglutathione lyase protein RHE_CH01622 1702700 - 1703041 + | hypothetical protein TERM 1580 1703228 - 1703212 - f 100 -10.9 -6.31682 | opp_overlap 1703212 1703215 AAAACCAAAAAAAAA CAAGGCT AAA AGCCTTG TTTTAAGTATCGCGT TERM 1581 1703212 - 1703228 + F 86 -10.9 -4.23758 | opp_overlap 1703212, overlap 1703215 AAAACCAAAAAAAAA CAAGGCT AAA AGCCTTG TTTTAAGTATCGCGT TERM 1582 1703215 - 1703225 + F 71 -6.8 -4.23999 | opp_overlap 1703212, overlap 1703212 ACCAAAAAAAAACAA GGCT AAA AGCC TTGTTTTAAGTATCG TERM 1583 1703348 - 1703384 + F 86 -2.4 -5.63857 | gap 2, opp_overlap 1703355 1703358, overlap 1703358 TTGCCTGTTTTGTGA GCTAA-AACTA-GCCCAA ACA TTGGGCTTTGTCATTAGC TTTTTTTGCATTTTT TERM 1584 1703358 - 1703372 + F 79 -10 -4.08578 | opp_overlap 1703355 1703358, overlap 1703348 TGTGAGCTAAAACTA GCCCAA ACA TTGGGC TTTGTCATTAGCTTT TERM 1585 1703396 - 1703416 + F 79 -4.1 -5.0916 | TAGCTTTTTTTGCAT TTTTGCT ACACACC AGCAAAA TTTTTCTGTTGACAA TERM 1586 1703680 - 1703670 - g 71 -4.6 -4.41494 | overlap 1703679 CATCCTTAAGGAAAA CCCC AAG GAGG CGGAAATCGTCTCCC proS 1703629 - 1704951 + | prolyl-tRNA synthetase TERM 1587 1705042 - 1705058 + F 73 -9.3 -3.90744 | TTTTCCACCTTTGAG CGCCTCG TGG CGTGGCG TTATTTGCGCGCCCG RHE_CH01624 1705126 - 1706271 + | lipoprotein ABC transporter, permease protein RHE_CH01625 1706286 - 1706969 + | lipoprotein ABC transporter, ATP-binding protein RHE_CH01626 1707864 - 1706980 - | hypothetical protein TERM 1588 1707197 - 1707150 - G 77 -14.8 -2.87132 | gap 1 GGCCTTCGCGATACA TTGCCGACAGCGCCGCCGTGATC ACC GTTC-CGGCGGCACTGCCGTCGA TGAGATCAGGCGCGA TERM 1589 1707527 - 1707513 - G 100 -10 -5.01823 | overlap 1707516 ATAAGAAGAACAAAA GAGCGA GCA TCGCTC GATCGCCTTGGGGCA TERM 1590 1707994 - 1708012 + G 70 -11.6 -3.15544 | TTCAACGGGTGAGGC GACCGGCG GCA CGCCGGGC TTCATCCACCTGAGG dnaE 1707959 - 1711456 + | DNA polymerase III subunit alpha RHE_CH01628 1712836 - 1711547 - | hypothetical protein TERM 1591 1711803 - 1711813 + g 88 -8.2 -4.72272 | overlap 1711801 ATGCCGAGCCAGTCC GCCG TGC CGGC TTTTTCATCGACCGC dinP 1714324 - 1713032 - | DNA polymerase IV TERM 1592 1714467 - 1714479 + H 82 -6.2 -4.99861 | opp_overlap 1714458, overlap 1714457 TCGAAACCCTGTTCG GCCC ACAGG GGGC TTTTTATAATTGCTG RHE_CH01630 1714523 - 1714987 + | putative acetyltransferase protein RHE_CH01631 1715630 - 1714962 - | hypothetical protein TERM 1593 1715949 - 1715959 + H 73 -5.4 -4.63218 | CTTTGCATTTCGAGG GGTA AGT TACC TTTTCTTCAACCAAA celR1 1716074 - 1716445 + | two-component response regulator protein TERM 1594 1717174 - 1717202 + G 82 -14.5 -3.26471 | GATTATCACCGAGCA GGGCGCCGACGAC ATG GTCGTCCGCGCGC TTGATCTCGGCGTCA TERM 1595 1717331 - 1717297 - g 74 -12.8 -3.33261 | TCGCAAGCGCTACAA CGACCGTCTGCGCGCC AGC GTCAAGCAGACGATCG AGCTTGCCGTGACCG TERM 1596 1717427 - 1717461 + G 70 -9.9 -3.53811 | overlap 1717420 TCGATGGCGCGGGGC CGGCCGCTTTCGGTG CTGAT CACCGATATCGACCG TTTCAAGCAGGTGAA pleD 1716464 - 1717837 + | response regulator PleD TERM 1597 1717850 - 1717865 + T 71 -11.8 -2.85366 | overlap 1717849 TGACGAATCACTTGG GGCGCC ATAC GGCGCC ATTTGCGGTTTTCCA TERM 1598 1717972 - 1717948 - T 71 -12.1 -2.84732 | opp_overlap 1717947 1717946 1717967 CCCAAATTTAGCAGA CCGGTAGCCCA AAA TGGACTCCCGG CGTTGCTGTGGATAT TERM 1599 1718099 - 1718080 - T 70 -5.6 -4.43208 | opp_overlap 1718088 AGAGGGTCAAATAAA GTGTGGCG GCAT CACCTCAC GTAAGGGGAGGGGCT TERM 1600 1718484 - 1718453 - T 95 -13.8 -4.63218 | gap 1, opp_overlap 1718453 CCCCTTTCAAGAAAA CGCCGCCACTTCC GGAAGAT GGAAG-GGCGGCG TTTGTCTGTTTGCGC TERM 1601 1718453 - 1718484 + T 100 -14.5 -4.27886 | gap 1, opp_overlap 1718453 CCCCTTTCAAGAAAA CGCCGCCACTTCCG GAAGA TGGAAG-GGCGGCG TTTGTCTGTTTGCGC TERM 1602 1718559 - 1718539 - T 100 -6.8 -5.7946 | gap 1, opp_overlap 1718539 1718540 GGGGCAATAAAAAAA CGCGCAACC CAAA GGC-GCGCG CTTTTGAAATCCATC rpmG 1718753 - 1718586 - | 50S ribosomal protein L33 TERM 1603 1718723 - 1718701 - G 71 -5.5 -4.33417 | opp_overlap 1718708 1718710 GTGACGTAGAAGAAA CCGGTGTCG GCTGT CGACAGCAG CTTGATCTTGATTGT TERM 1604 1718808 - 1718781 - R 95 -13.5 -4.3295 | gap 1, opp_overlap 1718779 1718778 TTTAAGAAAATGAAA GCCGTGGAAGCC GGATG GGCT-CCACGGC AAATTCTGGCGCGAA RHE_CH01635 1720030 - 1718846 - | ABC transporter permease RHE_CH01636 1720736 - 1720281 - | hypothetical protein rnr 1723175 - 1720806 - | exoribonuclease protein topA 1725831 - 1723177 - | DNA topoisomerase I TERM 1605 1723875 - 1723924 + g 80 -14.9 -3.17723 | overlap 1723878 TCGGCTCGTTGAGCG CGACACCCTCCGCTTCTCCGCCG TTTT CGGAGGAGAGCTGGCGGGTGTAG TTGCATTCCGGATAA TERM 1606 1723878 - 1723921 + g 78 -15.2 -2.78712 | overlap 1723875 GCTCGTTGAGCGCGA CACCCTCCGCTTCTCCGCCG TTTT CGGAGGAGAGCTGGCGGGTG TAGTTGCATTCCGGA TERM 1607 1724592 - 1724563 - G 76 -13.5 -3.14683 | opp_overlap 1724578 1724586 1724587 1724590 ATAGGCGGCGATGAA GCCGTCGAACCGG ATGA CCGAGCCGACGGC GCGCAGGCCGGCCTT TERM 1608 1724785 - 1724797 + g 81 -6.9 -4.68506 | opp_overlap 1724763, overlap 1724794 GCGGATCGCCTCGTG CGCCT CCT GGGCG TTTTTCGCCTTGGTT TERM 1609 1725865 - 1725849 - R 75 -2.1 -5.02074 | overlap 1725851 1725852 TGATTCTCTAAAAAA GACTCCG CGC CGGCGTG GAAGCCAGCGCAACA RHE_CH01639 1727217 - 1726075 - | DNA processing chain A protein TERM 1610 1727074 - 1727055 - G 70 -10 -3.64703 | gap 1 CGCCGCGCACCGAAA GCTC-CGGC AAC GCCGCGAGC GCAGCCTCGGCCGAA RHE_CH01640 1727837 - 1727217 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 1611 1727576 - 1727541 - G 80 -14.8 -3.15249 | gap 1, overlap 1727551 GAGATGGCCGATGAA GGCGAAGAAGCCGGCGA TGA TTGC-GGCCTCTTCGCC GAGGAAATAGCCGAC RHE_CH01641 1729173 - 1727884 - | dihydroorotase pyrB 1730126 - 1729170 - | aspartate carbamoyltransferase catalytic subunit aidB 1730305 - 1731963 + | acyl-CoA dehydrogenase protein TERM 1612 1731956 - 1731982 + T 75 -13 -3.01791 | TGCTTTACCCGCCGG CCGCCTGATTGC AAG GCGATCAGGCGA TCTTGAGACCGAGAT RHE_CH01644 1732487 - 1731975 - | hypothetical protein TERM 1613 1732297 - 1732311 + g 91 -9.2 -4.52857 | overlap 1732290 TCGATATTCTGCAGA CGCCGT CTA GCGGCG TTTTCTATCCCACGT TERM 1614 1732661 - 1732684 + r 95 -13.8 -4.04209 | opp_overlap 1732661 TTCCATAAACAAAAA TCCGGCCGCG TCAC CACGGCCGGA TTTATCGTCATTTAC TERM 1615 1732684 - 1732661 - R 100 -16 -5.38054 | opp_overlap 1732661 TTCCATAAACAAAAA TCCGGCCGCG TCAC CACGGCCGGA TTTATCGTCATTTAC rne 1735601 - 1732716 - | ribonuclease E protein TERM 1616 1733283 - 1733295 + g 83 -9.1 -4.28361 | AGCGCGGGTCTCAGG CGCTG CTG CAGCG TTTTCATCGCCTTCG TERM 1617 1736791 - 1736780 - g 81 -2.2 -5.24129 | gap 1, opp_overlap 1736781 CGGCGCCAGAAAAAA CAGCC CCC GGC-G ATTTCGTCATTGCCG amiC 1736299 - 1737483 + | n-acetylmuramoyl-l-alanine amidase protein TERM 1618 1737646 - 1737634 - f 71 -9.1 -3.73402 | ACAGTCCTGATGAAA CGCTG CCG CAGCG ACGAATGCGGCGGGC TERM 1619 1739988 - 1740026 + G 70 -7.3 -4.09739 | gap 1, overlap 1739979 ATACGCCGGCCCCGC TCGGCCGCGGCGGTACCG GCGG CGGTCTATCCGCG-CCGA TTTTCAACGAATTCA mrcA 1737845 - 1740304 + | penicillin binding peptidoglycan synthetase protein TERM 1620 1740321 - 1740358 + F 75 -12.6 -2.98823 | overlap 1740323 CCTCATCCAATTTTG GAAGCCCGCCCCGGCT CTTTAC ATCCGCGGCGGGCGTC TCTATGTCACCAGCA prfB 1740569 - 1741537 + | peptide chain release factor 2 TERM 1621 1741580 - 1741565 - T 71 -4.6 -4.62168 | opp_overlap 1741565, overlap 1741560 1741558 ATGGAAATCAGAAAA GCCCTG GGAA CAGCGC TTTTTTGTTCAGCCT TERM 1622 1741565 - 1741580 + T 88 -4.6 -5.45652 | opp_overlap 1741560 1741558 1741565 ATGGAAATCAGAAAA GCCCTG GGAA CAGCGC TTTTTTGTTCAGCCT RHE_CH01649 1742608 - 1741589 - | hypothetical protein RHE_CH01650 1743144 - 1742641 - | hypothetical protein ppnK 1743922 - 1743149 - | inorganic polyphosphate/ATP-NAD kinase TERM 1623 1744006 - 1744035 + H 75 -6.3 -4.54727 | ACAAGGTGTTTTGGA TCCGCGCCGAC TTGGCCGC GCCGGCACGGA TTTTCCTTTACAGGA RHE_CH01653 1744357 - 1744695 + | hypothetical protein RHE_CH01654 1745904 - 1745212 - | putative metalloprotease inhibitor (transcriptional regulator) protein TERM 1624 1745854 - 1745876 + g 72 -12 -3.28712 | overlap 1745855 CCCAGCCGAACCGCA GTCCAGCAGC ATG GCTGCTGGAA TTGTGAGCCGAAGCA TERM 1625 1745855 - 1745875 + g 77 -15.5 -2.57132 | overlap 1745854 CCAGCCGAACCGCAG TCCAGCAGC ATG GCTGCTGGA ATTGTGAGCCGAAGC TERM 1626 1745923 - 1745938 + r 71 -7.5 -4.18197 | AATCCCCCCTCTGCC GCGGC CCGTAA GCCGC TTTTAAGTCCAGCCT RHE_CH01655 1746842 - 1745952 - | tRNA/rRNA methyltransferase protein TERM 1627 1746884 - 1746915 + H 90 -8 -5.04265 | GCCGCATAGGCTTTC TTTCATGTGCCGGC TTTC GGCGGCGAATGAAA TTTTTCGTGTTTTTT TERM 1628 1748695 - 1748668 - g 86 -7.7 -4.67982 | gap 1, overlap 1748663 CGCGATGGAAGAAAA GCTGCGCTTCGC CATCC GCGAAG-GCGGC CGCACCGTCGGCGCC tufB 1747562 - 1748737 + | elongation factor Tu TERM 1629 1748760 - 1748791 + F 95 -17.4 -3.445 | opp_overlap 1748757 1748764 1748766, overlap 1748766 GGTTATCCACAATCA GGAAGACCCCGCTG GAAA CAGCGGGGTTTTTC GTTTTTGATGCATCC TERM 1630 1748787 - 1748764 - f 77 -12.4 -3.30741 | opp_overlap 1748760 1748766, overlap 1748757 1748766 ATCCACAATCAGGAA GACCCCGCTG GAAA CAGCGGGGTT TTTCGTTTTTGATGC TERM 1631 1748785 - 1748766 - f 86 -15 -3.21684 | opp_overlap 1748760 1748766, overlap 1748764 1748757 CCACAATCAGGAAGA CCCCGCTG GAAA CAGCGGGG TTTTTCGTTTTTGAT TERM 1632 1748766 - 1748785 + F 100 -15 -5.1971 | opp_overlap 1748766 1748764 1748757, overlap 1748760 CCACAATCAGGAAGA CCCCGCTG GAAA CAGCGGGG TTTTTCGTTTTTGAT TERM 1633 1749156 - 1749122 - f 74 -12.7 -2.79785 | overlap 1749121 TGATAGGGCAATAAT GGGCCAGGTGCTCCC GGACA GGGTGCTCCTGGCGC GGCGGGGTGAAACCC TERM 1634 1749654 - 1749630 - g 71 -8.5 -3.96216 | CGTCGAGCGAAACAA CCTACGGCG TCTGCTT CGCCGAAGG CCATCGCGACTTCCA RHE_CH01659 1749248 - 1750141 + | p nucleoside-diphosphate-sugar epimerase protein TERM 1635 1750521 - 1750557 + F 81 -15.2 -2.75064 | opp_overlap 1750517 1750519, overlap 1750518 1750532 GGTTCAACAGACACG CGGTGCGTGGGGCTGA TAGTT TCAGCTTTACGCGCCG TAATTGCGTGGGCAG secE 1750576 - 1750776 + | preprotein translocase subunit SecE nusG 1750794 - 1751324 + | transcription antitermination protein NusG TERM 1636 1751765 - 1751747 - g 73 -11 -3.62046 | CTATTGGCTGAAGAA GGAGGCGA AGA TCACCTCC GGTTCCAAGACGCCC rplK 1751502 - 1751933 + | 50S ribosomal protein L11 rplA 1751938 - 1752639 + | 50S ribosomal protein L1 TERM 1637 1752647 - 1752664 + F 72 -10.5 -3.47349 | overlap 1752641 CTGCATAAGTTTAAG GTCGGGC TTGC GCCCGGC TTCTGAATTTCCGGC TERM 1638 1752673 - 1752696 + F 80 -14.6 -3.01924 | GCCCGGCTTCTGAAT TTCCGGCCTC ACAA GGGGCCGGAA TATTCCGGAGAAATC TERM 1639 1752873 - 1752899 + F 71 -6.7 -4.25104 | opp_overlap 1752876, overlap 1752861 1752874 GAGCGCGAGGGGACA G-GATCCTCAAGC GTC GCTTG-GGATCTC TTTTGATCCCAAGGG TERM 1640 1752874 - 1752897 + F 77 -10.4 -3.73042 | gap 1, opp_overlap 1752876, overlap 1752861 1752873 AGCGCGAGGGGACAG GATCCTCAAGC GTC GCTTG-GGATC TCTTTTGATCCCAAG TERM 1641 1753002 - 1752988 - g 73 -3.5 -4.6856 | GAAAGAGCGGAAAAA CGCGA ATTCG TCACG GAACTGAACGAAGTC rplJ 1752970 - 1753488 + | 50S ribosomal protein L10 TERM 1642 1753481 - 1753493 + F 79 -6.9 -4.71061 | opp_overlap 1753481 CCAAGAAGGACGAAG CCGCT TAA GGCGG TTTTTCGCTGTACAT rplL 1753545 - 1753928 + | 50S ribosomal protein L7/L12 TERM 1643 1753936 - 1753975 + F 90 -12.1 -4.25283 | overlap 1753943 TCAAGTAATCTTGAA CTGCACGTGGGAGGCGG CATTTA CTGCCTCCCATTTGCCG TTTTCCTGAACGAAT TERM 1644 1753943 - 1753968 + F 85 -12.6 -3.77484 | overlap 1753936 ATCTTGAACTGCACG TGGGAGGCGG CATTTA CTGCCTCCCA TTTGCCGTTTTCCTG TERM 1645 1753986 - 1754029 + F 81 -12.6 -3.61715 | opp_overlap 1753990 1754000, overlap 1753990 1754000 TGCCGTTTTCCTGAA CGAATTACCCAAAAGCCG CGTGAAAA CGGCTTTTGGGTAATGGG TTCTTCAAGAGCATG TERM 1646 1754025 - 1753990 - f 91 -17.1 -3.33696 | opp_overlap 1753990 1753986 1754000, overlap 1754000 GTTTTCCTGAACGAA TTACCCAAAAGCCGC GTGAAA ACGGCTTTTGGGTAA TGGGTTCTTCAAGAG TERM 1647 1753990 - 1754025 + F 85 -16.4 -2.6563 | opp_overlap 1753990 1754000, overlap 1753986 1754000 GTTTTCCTGAACGAA TTACCCAAAAGCCG CGTGAAAA CGGCTTTTGGGTAA TGGGTTCTTCAAGAG TERM 1648 1754287 - 1754263 - g 74 -9.3 -3.89614 | CCGAAGTCGCAGAAA TGCCGAACCTC ATC GAGGTTCAGAA GGCGTCCTACGACCA TERM 1649 1755020 - 1755045 + G 70 -10.3 -3.59979 | opp_overlap 1755020 GGAAGCCGGCAAGAA GCTGACGCCGC GCCT GCTGCGACAGC TTTCCGATAAGGGCC TERM 1650 1755045 - 1755020 - g 70 -10.3 -3.63569 | opp_overlap 1755020 GGAAGCCGGCAAGAA GCTGACGCCGC GCCT GCTGCGACAGC TTTCCGATAAGGGCC rpoB 1754187 - 1758326 + | DNA-directed RNA polymerase subunit beta TERM 1651 1758412 - 1758424 + F 73 -9.1 -3.93216 | GGAAGGGATGTTTCG CCGCA TCT TGCGG TTATTCTCGTTTAAG TERM 1652 1759462 - 1759448 - g 74 -12.8 -3.28712 | TGCGCTCTTCGATAA CGGCCG CCG CGGCCG CGTCATCACCGGCGC TERM 1653 1759788 - 1759730 - g 76 -9.7 -4.08692 | opp_overlap 1759737, overlap 1759736 1759778 GAAGCTGGTTGAAAA GGAAAAGCCGGAAGTTTG-GGACATCCTC GAC GAGGTCATCCGCGAACATCCGG-TTCTCC TGAACCGCGCACCGA TERM 1654 1759783 - 1759736 - g 76 -6.2 -4.67038 | gap 1, opp_overlap 1759737, overlap 1759730 1759778 GGTTGAAAAGGAAAA GCCGGAAGTTTG-GGACATCCTC GAC GAGGTCATCCGCGAACATCCGGT TCTCCTGAACCGCGC TERM 1655 1760412 - 1760424 + G 76 -9.1 -4.05788 | GGCTTTAGCCATGCC TGCCG CGC CGGCA TTTCGTTTGGCAAGG rpoC 1758516 - 1762724 + | DNA-directed RNA polymerase subunit beta' TERM 1656 1762747 - 1762780 + T 100 -21.9 -4.02456 | opp_overlap 1762753, overlap 1762748 1762753 CTGAGGTCCACGAAT TGAAAACCGCCCGGA GCGA TCCGGGCGGTTTTCG TTTGTGCTAGTCTTT TERM 1657 1762748 - 1762779 + T 100 -23.2 -3.00389 | opp_overlap 1762753, overlap 1762747 1762753 TGAGGTCCACGAATT GAAAACCGCCCGGA GCGA TCCGGGCGGTTTTC GTTTGTGCTAGTCTT TERM 1658 1762753 - 1762774 + T 100 -17.3 -4.63479 | opp_overlap 1762753, overlap 1762748 1762747 TCCACGAATTGAAAA CCGCCCGGA GCGA TCCGGGCGG TTTTCGTTTGTGCTA TERM 1659 1762774 - 1762753 - T 100 -17.3 -4.30014 | opp_overlap 1762753 1762748 1762747 TCCACGAATTGAAAA CCGCCCGGA GCGA TCCGGGCGG TTTTCGTTTGTGCTA RHE_CH01669 1763118 - 1762825 - | hypothetical protein TERM 1660 1763273 - 1763304 + H 71 -4.4 -4.67607 | gap 1, opp_overlap 1763268 1763266, overlap 1763274 GATGAAAACAGGGCG TTTGGCCCGCATATC AAG GTGATGCG-GCCAAG TTTATTTCTTAACCG TERM 1661 1763490 - 1763522 + H 71 -7.8 -4.14392 | gap 1, overlap 1763492 GCGTCCTCTGCTCCT TGTGGTCC-ATCTGC GGAA GCGGATCGGGCCATA TTTTGCGCATTGACG rpsL 1763615 - 1763986 + | 30S ribosomal protein S12 TERM 1662 1763977 - 1763992 + F 74 -7.6 -4.21194 | opp_overlap 1763988 GTACGGTGCGAAGCG TCCGAA GTAA TTCGGA TTTTGAATAATCCGG rpsG 1764065 - 1764535 + | 30S ribosomal protein S7 TERM 1663 1766094 - 1766074 - g 79 -8.9 -4.34488 | opp_overlap 1766074, overlap 1766076 TACACGCACAAGAAA CAGACCGGT GGT ACCGGCCAG TTCGCTCGCGTCAAG TERM 1664 1766092 - 1766076 - g 74 -10.1 -3.76888 | opp_overlap 1766074, overlap 1766074 CACGCACAAGAAACA GACCGGT GGT ACCGGCC AGTTCGCTCGCGTCA fusA2 1764565 - 1766664 + | elongation factor G TERM 1665 1766673 - 1766646 - f 100 -17.2 -3.70076 | overlap 1766636 CGAAATCCAGGCAAA GTATTCCGGTCA GAAG TGACCGGAATAC CAATTGACCGATAAC TERM 1666 1767866 - 1767839 - g 86 -7.7 -4.67982 | gap 1, overlap 1767834 CGCGATGGAAGAAAA GCTGCGCTTCGC CATCC GCGAAG-GCGGC CGCACCGTCGGCGCC tufA 1766733 - 1767911 + | elongation factor Tu TERM 1667 1767917 - 1767941 + F 85 -15.7 -3.06302 | opp_overlap 1767916 1767912 GCTCGAGTAATTCAT TCGGCCGCTCC GGT GGGGTGGCCGA TTCGATGACAATAAT TERM 1668 1767962 - 1767983 + F 84 -13.7 -3.61517 | opp_overlap 1767961 1767958 1767956 TGACAATAATATGAT GCAGGCGGC GTAA GCCGCTTGC TTATTACACAGAAAT TERM 1669 1768027 - 1768002 - f 71 -11.9 -2.74987 | opp_overlap 1768007 1768010 1768013, overlap 1767999 1767998 1768007 TTACACAGAAATGTA GCAAATGGCGC GCGA GCGCGATTTGC GTGCCGCTTTGGACG rpsJ 1768218 - 1768526 + | 30S ribosomal protein S10 rplC 1768560 - 1769201 + | 50S ribosomal protein L3 TERM 1670 1769727 - 1769758 + G 70 -10.3 -3.56092 | opp_overlap 1769720 1769729 GCAGAACATCCCGAA CATTGATGTTCTG CCGATC CAGGGCATCAATG TTTACGACATCGTGC rplD 1769215 - 1769835 + | 50S ribosomal protein L4 rplW 1769832 - 1770125 + | 50S ribosomal protein L23 rplB 1770137 - 1770973 + | 50S ribosomal protein L2 rpsS 1770989 - 1771267 + | 30S ribosomal protein S19 TERM 1671 1771297 - 1771285 - g 73 -6.9 -4.27584 | ATGGGCAAGGCAAAA GCCGA ACG CCGGC TGAAGGACAACGAGG TERM 1672 1771396 - 1771353 - g 88 -16 -3.30124 | CGTCAGCCCCCAGAA GCTCAACCTGGTTGCTGCGG CCAT CCGCGGCAAGAAGGTCGAGC GTGCACTCGCTGAGC rplV 1771270 - 1771659 + | 50S ribosomal protein L22 TERM 1673 1771978 - 1771954 - g 77 -12.9 -3.61764 | TGACCAATTCGGAAA CGCACCTCAAC ATC GTCGAAGTGCG CAAGCCCGAAGTCGA rpsC 1771659 - 1772393 + | 30S ribosomal protein S3 rplP 1772432 - 1772845 + | 50S ribosomal protein L16 rpmC 1772857 - 1773057 + | 50S ribosomal protein L29 rpsQ 1773070 - 1773309 + | 30S ribosomal protein S17 TERM 1674 1773366 - 1773388 + F 95 -11.3 -4.54727 | opp_overlap 1773360 1773357 1773369 TATGAAGCAGCGTCA GAACGCTCG AATGC CGGGCGTTC TTTTGCTTTGAGCGC TERM 1675 1773624 - 1773589 - g 71 -4.7 -4.48299 | gap 2, opp_overlap 1773592, overlap 1773590 TCAGATGCAAACAAA CCTCGACGT-CG-CGGA TAAT TCCGGCGCACGTCGTGT CATGTGCATCAAGGT TERM 1676 1773779 - 1773745 - g 73 -12.8 -3.16564 | overlap 1773772 1773774 GGGTGACGTGATGAA GGCGGTTGTCGTTCGC ACC GCCAAGGACATCCGCC GTCCGGATGGCTCCG rplN 1773569 - 1773937 + | 50S ribosomal protein L14 rplX 1773950 - 1774258 + | 50S ribosomal protein L24 TERM 1677 1774556 - 1774514 - g 78 -10.5 -4.08692 | gap 1 CAAGGTCCGCGAAAA CATGCCGATCGGCGCGAAGG TCAC CCTGCGCGGCGCCCG-CATG TACGAGTTCCTGGAT rplE 1774251 - 1774808 + | 50S ribosomal protein L5 rpsN 1774841 - 1775146 + | 30S ribosomal protein S14 rpsH 1775159 - 1775557 + | 30S ribosomal protein S8 rplF 1775600 - 1776133 + | 50S ribosomal protein L6 rplR 1776146 - 1776508 + | 50S ribosomal protein L18 TERM 1678 1776515 - 1776543 + F 100 -16.8 -4.08216 | gap 1 ACCTTCTGATCAGTT TCCGGCCGGACGC TGTC GC-TCCGGCCGGA TTTTCGCCGGACTGC TERM 1679 1776740 - 1776764 + G 72 -4.1 -4.54727 | overlap 1776743 1776744 CGATCAACCGCGTCG CCAAGGTCGTC AAG GGCGGCCGTCG TTTTGGTTTCGCAGC rpsE 1776643 - 1777212 + | 30S ribosomal protein S5 rpmD 1777226 - 1777435 + | 50S ribosomal protein L30 rplO 1777452 - 1777928 + | 50S ribosomal protein L15 TERM 1680 1777969 - 1777943 - f 90 -18 -2.94925 | opp_overlap 1777943, overlap 1777929 ATATCTGATGATATA TCGCCCGGGGTG CTT CACACCGGGCGA TTTTGCTCCCATATG TERM 1681 1777943 - 1777969 + F 100 -18 -4.27617 | opp_overlap 1777943 1777929 ATATCTGATGATATA TCGCCCGGGGTG CTT CACACCGGGCGA TTTTGCTCCCATATG TERM 1682 1778583 - 1778626 + G 72 -2.2 -4.77986 | gap 1, overlap 1778549 1778585 CTTACGGCATTGCCG CCGGCCTTGAGAG-CGGCCAG GGC CTTGTCGTCGATCCGGGCTGG TTTTTCCGTATTTCC TERM 1683 1779023 - 1779039 + G 70 -7.9 -4.07568 | TCGCTGCTGCTGCTG CCGGCGA CAG TCGCGGG TTTTGCCAACACCAC secY 1778162 - 1779502 + | preprotein translocase subunit SecY adk 1779499 - 1780149 + | adenylate kinase (ATP-AMP transphosphorylase) protein TERM 1684 1780232 - 1780271 + F 90 -12.2 -4.1964 | gap 1, opp_overlap 1780207 1780205, overlap 1780207 1780206 TCGCGACATTCCCTG CGATCG-GCGCGGATTTCC CTG GGAAGTCCGGGTGCGGTCG TTTTGACATGTTACG rpsM 1780372 - 1780740 + | 30S ribosomal protein S13 TERM 1685 1780762 - 1780786 + F 100 -15 -4.35524 | GGAAACCGGGGTGGG GAGGCTGGCG GTCCG CGCCGGCCTC TTTTGAGTTTGGAAC rpsK 1780874 - 1781263 + | 30S ribosomal protein S11 TERM 1686 1781276 - 1781306 + F 87 -11.9 -4.1196 | gap 1, overlap 1781268 1781269 1781277 TGATCATCGCTCTCG TCACCGGTGAGCGC TTCT GTGCTC-CCGGTGG TTTTCAAGCTCGGTT TERM 1687 1781277 - 1781305 + F 75 -13.2 -3.06694 | gap 1, overlap 1781268 1781269 1781276 GATCATCGCTCTCGT CACCGGTGAGCGC TTCT GTGCTC-CCGGTG GTTTTCAAGCTCGGT TERM 1688 1781647 - 1781626 - g 78 -10.2 -4.00469 | TCAACATCAAGGAAA TCGCCATC AAGATG GATGGCGA CGACGCAAAGCGCAT rpoA 1781361 - 1782371 + | DNA-directed RNA polymerase subunit alpha TERM 1689 1782401 - 1782382 - f 85 -4.9 -5.19275 | opp_overlap 1782382 ATTGAGAAAACAAAA GGCAGGC TCTTTC GACTGCC TTTCCCCGTCAAACA TERM 1690 1782671 - 1782643 - g 70 -7.3 -4.09685 | TCCGATCGTCGAAAA GCTCGTCACGCTC GGC AAGCGCGGCGACC TGCACGCTCGCCGTC rplQ 1782494 - 1782916 + | 50S ribosomal protein L17 TERM 1691 1782936 - 1782971 + F 100 -20.6 -3.92869 | opp_overlap 1782942, overlap 1782937 1782942 TCCGCTTCGGCGGAT AGAAAACAGCCGGGCT GCAA AGCCCGGCTGTTTTCG TTTGTGCATCGGTCA TERM 1692 1782937 - 1782970 + F 100 -24.1 -2.954 | opp_overlap 1782942, overlap 1782936 1782942 CCGCTTCGGCGGATA GAAAACAGCCGGGCT GCAA AGCCCGGCTGTTTTC GTTTGTGCATCGGTC TERM 1693 1782965 - 1782942 - f 100 -18.2 -4.52589 | opp_overlap 1782942 1782937 1782936 TCGGCGGATAGAAAA CAGCCGGGCT GCAA AGCCCGGCTG TTTTCGTTTGTGCAT TERM 1694 1782942 - 1782965 + F 100 -18.2 -4.62475 | opp_overlap 1782942, overlap 1782937 1782936 TCGGCGGATAGAAAA CAGCCGGGCT GCAA AGCCCGGCTG TTTTCGTTTGTGCAT RHE_CH01701 1783066 - 1783470 + | hypothetical protein RHE_CH01702 1784145 - 1783489 - | putative sulfite oxidase subunit YedZ RHE_CH01703 1785092 - 1784145 - | putative sulfite oxidase subunit YedY ilvDch1 1785432 - 1787270 + | dihydroxy-acid dehydratase TERM 1695 1787290 - 1787310 + T 87 -11.9 -4.07568 | TCTCGAACCTACGAC CCGCTGATT AAG AGTCAGCGG TTTTGCCAACCGGCC TERM 1696 1787314 - 1787348 + T 100 -11.4 -4.89852 | overlap 1787316 1787317 AAGAGTCAGCGGTTT TGCCAACCGGCCGC CGTCAAA GCGGCCGGTTGATG TTTTTGTAGGTCTCG TERM 1697 1787316 - 1787346 + T 100 -14 -4.06785 | overlap 1787314 1787317 GAGTCAGCGGTTTTG CCAACCGGCCGC CGTCAAA GCGGCCGGTTGA TGTTTTTGTAGGTCT TERM 1698 1787317 - 1787345 + T 89 -17.5 -3.02986 | overlap 1787316 1787314 AGTCAGCGGTTTTGC CAACCGGCCGC CGTCAAA GCGGCCGGTTG ATGTTTTTGTAGGTC RHE_CH01705 1787677 - 1787330 - | hypothetical protein RHE_CH01706 1788080 - 1787700 - | hypothetical protein TERM 1699 1789093 - 1789081 - g 79 -9.1 -4.15044 | CTTGGGCTCAATAAA GTGCG CGG CGCAC TCGTGGTCAAGGTTT TERM 1700 1789249 - 1789235 - g 78 -10 -4.07568 | CCGGCCTCGGCAAAA CGGTCA ATC TGACCG TCATCGACAATGGCC degPch3 1788325 - 1789617 + | serine protease DO-like protein RHE_CH01708 1789614 - 1790930 + | recombination factor protein RarA RHE_CH01709 1791254 - 1790943 - | hypothetical protein RHE_CH01710 1792704 - 1791706 - | 2-dehydropantoate 2-reductase RHE_CH01711 1793711 - 1792860 - | dehydrogenase protein RHE_CH01712 1793825 - 1794712 + | LysR family transcriptional regulator RHE_CH01713 1795286 - 1794723 - | putative nucleoside 2-deoxyribosyltransferase protein TERM 1701 1795206 - 1795217 + g 83 -7.2 -4.58663 | GAAGCCGAACTGACG CGCC AATC GGCG TTTTTCGGCCATGAT RHE_CH01714 1795568 - 1796611 + | putative esterase/lipase/thioesterase family protein RHE_CH01715 1797261 - 1796638 - | hypothetical protein TERM 1702 1796799 - 1796844 + g 78 -3.1 -5.0133 | gap 1, opp_overlap 1796789, overlap 1796802 1796802 1796841 AGAAGCACCGGGCGG CGGCGGCGGCCGTGACGTCGAA TAT TTCGGCGTCGCT-CAGCCCGTG TTTTTTCAACCCGTC RHE_CH01716 1797782 - 1797408 - | putative two-component sensor histidine kinase protein RHE_CH01717 1798515 - 1797775 - | putative two-component sensor histidine kinase protein RHE_CH01718 1798907 - 1798617 - | hypothetical protein RHE_CH01719 1799309 - 1800364 + | LacI family transcription regulator TERM 1703 1801997 - 1801967 - g 83 -7.5 -4.56597 | opp_overlap 1801976, overlap 1801969 GCTTCCTGCCAAAAA GGCACGGACGCTG GAGGG CAGCTTCCATGGC TAGCGGAACGGTCAG RHE_CH01720 1800366 - 1802000 + | acyl-CoA transferase protein RHE_CH01721 1801993 - 1802772 + | enoyl-CoA hydratase protein TERM 1704 1802866 - 1802847 - g 81 -13.6 -3.61178 | CTGATTGACGGCAAA TGGGAGGC CGGC GCCTCCCA TCCGATCGAACGTAT RHE_CH01722 1802772 - 1804292 + | NADP-dependent L-sorbosone dehydrogenase protein TERM 1705 1804333 - 1804350 + F 70 -11.3 -3.01712 | GGGCGGGTGATCGGA TGCGGGA ATGG TCCCGCA TCTTCCAAGAGGGAA RHE_CH01723 1804381 - 1805643 + | sugar ABC transporter, substrate-binding protein RHE_CH01724 1805756 - 1806709 + | sugar ABC transporter, permease protein TERM 1706 1807341 - 1807374 + G 73 -10.9 -3.65201 | gap 1 GGCCTTTCCGACCGA GCTGGTGCGCGCCGCC CAG GTCGACG-GCGCCAGC TTCTTCCAGATCTTC RHE_CH01725 1806706 - 1807677 + | sugar ABC transporter, permease protein RHE_CH01726 1807681 - 1808796 + | sugar ABC transporter, ATP-binding protein TERM 1707 1808851 - 1808877 + G 71 -13.6 -2.59177 | overlap 1808847 ATCATCGGCTCGGGC GTCGGCGGCGCC ACC GTCGCTGCCGGC CTTGCTGTATCAGGT TERM 1708 1809872 - 1809896 + G 74 -9.9 -3.72576 | TCAAGGGCTCTCTGC CGCAGGCGCCG GAA TGGCTTCTGCG TTTCATGACGGACCA RHE_CH01727 1808812 - 1810350 + | dehydrogenase protein TERM 1709 1810922 - 1810952 + G 77 -13.2 -3.58905 | overlap 1810927 ACCAGCTCACCCAGC GCAACCGCCGCCGG TCA TCGGCGTCGTTTGC TTATCTCTCGCCGAT TERM 1710 1810927 - 1810947 + G 78 -10.3 -4.06361 | overlap 1810922 CTCACCCAGCGCAAC CGCCGCCGG TCA TCGGCGTCG TTTGCTTATCTCTCG RHE_CH01728 1810492 - 1812015 + | FAD-dependent L-sorbose dehydrogenase protein RHE_CH01729 1812028 - 1813197 + | oxidoreductase protein RHE_CH01730 1813211 - 1815307 + | putative oxidoreductase protein xthA1 1816532 - 1815750 - | exodeoxyribonuclease III protein RHE_CH01732 1817156 - 1816659 - | hypothetical protein TERM 1711 1817329 - 1817348 + H 70 -3.4 -4.72497 | overlap 1817330 1817331 GGCGCATCCACTGCA TGCCGGAC CAAA GTCCTGCC TTTTCTTAGTACCTA TERM 1712 1817465 - 1817477 + G 85 -5.5 -5.09426 | CAATGGCATTGACTG TCTCG AAA CGGGA TTTTTTGAGATTCGG RHE_CH01733 1817452 - 1817946 + | hypothetical protein RHE_CH01734 1818618 - 1817995 - | two-component response regulator protein RHE_CH01735 1820009 - 1818621 - | two-component sensor histidine kinase protein TERM 1713 1819550 - 1819579 + g 73 -10.8 -3.58343 | gap 2 TGTAGATTTCCATCA GCGGCTTGCCGAGC GCGC GCTCGGC-A-CCGC TTTCCGGGTCATCGG RHE_CH01736 1820227 - 1821261 + | ubiquinone/menaquinone biosynthesis methyltransferase protein RHE_CH01737 1821372 - 1822220 + | hypothetical protein TERM 1714 1822308 - 1822276 - f 78 -14.2 -2.63102 | gap 1 ATCATCTTCAGATCA GCCGCACGACGGATG GCAG CGTC-GTCGTGCGGC CGCCGCGTTCAAGGA TERM 1715 1822369 - 1822404 + F 78 -12.6 -3.31792 | CCGCTGGTCTCGCCG TGCCGTTGATCGCTAT CCTC GTGGCGATCGTCGGCA TTCTCGCCGTGCTCG RHE_CH01738 1822493 - 1823074 + | hypothetical protein RHE_CH01739 1823189 - 1823503 + | hypothetical protein TERM 1716 1823601 - 1823582 - g 75 -2.8 -4.9138 | ATGATCGAAACAAAA TCGCCC GCTGACCA GGACGA GATATCGCCCCGTGA RHE_CH01740 1823567 - 1824451 + | hypothetical protein TERM 1717 1824507 - 1824540 + F 83 -9.5 -4.33417 | overlap 1824508 TGCGTTAACGATGTC CGACCGGTGTGGGAA CAAA TTCCCACGTCGGCCA TTTGTTGTCCATGAA TERM 1718 1824508 - 1824539 + F 75 -13 -3.19568 | overlap 1824507 GCGTTAACGATGTCC GACCGGTGTGGGAA CAAA TTCCCACGTCGGCC ATTTGTTGTCCATGA RHE_CH01741 1824551 - 1825543 + | hypothetical protein phhA 1826380 - 1825589 - | phenylalanine 4-monooxygenase TERM 1719 1826422 - 1826436 + H 84 -2.8 -5.34857 | TTTCTGTCATTATGC TCCG GGTTTGA CGGA TTTTCTTTTCTTTCA TERM 1720 1826646 - 1826667 + G 70 -12.3 -3.18264 | ACTCGAAGCCGACGG CGTCATCCG CAAG CGGGTGACG TTGCTCGATCCCGGC RHE_CH01743 1826503 - 1826964 + | AsnC family transcriptional regulator RHE_CH01744 1827468 - 1826968 - | AsnC family transcriptional regulator TERM 1721 1828040 - 1828090 + G 80 -5.4 -4.84311 | gap 1, opp_overlap 1828028, overlap 1828027 GGATCGGCTTACGAG GCCGAGTTCGATTGGCTTGGCGA GCCCAA TC-CGAAGCCGCTCGGGATCGGC TTTTATTATCTCGAC RHE_CH01745 1827599 - 1828708 + | 4-hydroxyphenylpyruvate dioxygenase protein hmgA 1828748 - 1830109 + | homogentisate 1,2-dioxygenase TERM 1722 1830917 - 1830899 - g 100 -16 -4.08767 | opp_overlap 1830878 1830908 1830909 CCCATGCCGCGAAAA CCCGCCAC CTC GTGGCGGG GACGATCATCGGTTC RHE_CH01747 1830148 - 1831173 + | fumarylacetoacetate hydrolase maiA 1831170 - 1831802 + | maleylacetoacetate isomerase protein RHE_CH01749 1832276 - 1831806 - | hypothetical protein TERM 1723 1833727 - 1833763 + Gr 78 -13.5 -3.14234 | overlap 1833726 1833724 CGCCTCTTACACGCT GCCGCCGTCCTCGGTCG TTC CGTCCGAGGTCGGCACC TATCTTCACTTCCTC RHE_CH01751 1834194 - 1833850 - | hypothetical protein RHE_CH01750 1832693 - 1833958 + | hypothetical protein RHE_CH01752 1834722 - 1834204 - | putative phosphohistidine phosphatase protein TERM 1724 1835141 - 1835100 - R 100 -24.7 -4.14392 | gap 1, opp_overlap 1835101 1835102 1835103, overlap 1835101 TGCCAAGTCGCAAAA CGCGTCATCGTCCGGGCACT TTT AGTGCCCGGACGATGAC-CA TTTCTTCTGTCGGAA TERM 1725 1835101 - 1835141 + r 100 -22.7 -4.38927 | opp_overlap 1835101 1835100, overlap 1835102 1835103 GCCAAGTCGCAAAAC GCGTCATCGTCCGGGCACT TTT AGTGCCCGGACGATGACCA TTTCTTCTGTCGGAA TERM 1726 1835140 - 1835101 - R 100 -26 -3.08314 | gap 1, opp_overlap 1835101 1835102 1835103, overlap 1835100 GCCAAGTCGCAAAAC GCGTCATCGTCCGGGCACT TTT AGTGCCCGGACGATGAC-C ATTTCTTCTGTCGGA TERM 1727 1835102 - 1835140 + r 100 -26.2 -3.22874 | opp_overlap 1835101 1835100, overlap 1835101 1835103 CCAAGTCGCAAAACG CGTCATCGTCCGGGCACT TTT AGTGCCCGGACGATGACC ATTTCTTCTGTCGGA TERM 1728 1835103 - 1835139 + r 100 -29.7 -2.53243 | opp_overlap 1835101 1835100, overlap 1835102 1835101 CAAGTCGCAAAACGC GTCATCGTCCGGGCACT TTT AGTGCCCGGACGATGAC CATTTCTTCTGTCGG nrd 1838992 - 1835177 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1729 1835944 - 1835960 + g 74 -12.3 -3.39803 | opp_overlap 1835928 1835948 TGTTCATCATCGCAC GGAAGGC AGC GCCTTCC TTGTGCATGTCGATG TERM 1730 1839230 - 1839211 - R 70 -5.6 -4.42386 | overlap 1839222 TTTGGAGGCAGAAAA CCGCACAG AGAT CCCTGCGG GCCTGAACCGATTCC TERM 1731 1839602 - 1839580 - R 72 -10.5 -3.53444 | TCAGCGCTGTCTAAA GTGCGCCTC GGATG GCGGCGCAC TGCGGACAATCAACG gpt 1840106 - 1839612 - | xanthine-guanine phosphoribosyltransferase TERM 1732 1840210 - 1840189 - R 72 -10.1 -3.60475 | AATCGGCAGGCCAAA TCGCGCAGC CCAA GCTGCGTGA GAACGGCCAAGCCCG RHE_CH01755 1841121 - 1840285 - | putative universal stress protein cinA1 1841988 - 1841212 - | competence-damage associated protein (nucleotide-utilizing enzyme related tomolybdopterin-biosynthesis enzyme MoeA) TERM 1733 1843312 - 1843332 + G 100 -4.7 -5.44119 | overlap 1843294 1843288 TGCCGTCGATCTATC GCGGCAA AATGTCA TTGTCGC TTTTTTTGACCTGCC TERM 1734 1843496 - 1843509 + G 71 -5.9 -4.2558 | overlap 1843497 CGGCCGTGCTTTCGA TCCGG CAAA CCGGG TTTTCGTGACCGATC TERM 1735 1843512 - 1843550 + G 82 -3.6 -5.15167 | overlap 1843513 CCGGCAAACCGGGTT TTCGTGACCGATCTGACG ACC CGCCAGGGCTGGCACGAC TTTTTCTTCATCCTG TERM 1736 1843804 - 1843792 - g 78 -3.4 -5.02074 | opp_overlap 1843797 TGATCGTGGAAAAAA TTGC AGTGA GCAA AACCGCTCAGCCGGG RHE_CH01757 1842414 - 1844411 + | hypothetical protein TERM 1737 1844542 - 1844556 + T 71 -8.5 -4.01888 | CGCTACGGCTTTCGC CGCCG CCTTC CGGCG TTTGTGGTCTGGACT TERM 1738 1845295 - 1845348 + T 100 -19.8 -3.53012 | overlap 1845299 1845303 GGTGCAACTGGCCGA CTTCTAGAGTGTCCTTAGCGCGTC GGAGAA GACGCGCTAAGGACACTCTATCAC TTTCGAACCGCACGG TERM 1739 1845299 - 1845344 + T 100 -29.4 -2.64155 | overlap 1845295 1845303 CAACTGGCCGACTTC TAGAGTGTCCTTAGCGCGTC GGAGAA GACGCGCTAAGGACACTCTA TCACTTTCGAACCGC TERM 1740 1845303 - 1845340 + T 100 -24.4 -2.98088 | overlap 1845299 1845295 TGGCCGACTTCTAGA GTGTCCTTAGCGCGTC GGAGAA GACGCGCTAAGGACAC TCTATCACTTTCGAA RHE_CH01758 1845924 - 1845400 - | hypothetical protein TERM 1741 1846501 - 1846538 + G 71 -11.2 -3.48395 | gap 1 GATAGGGTGGTTCTG CCGGTCGGCGGCGGCGG ACTGG CCGCCGGCATC-ACCGG TTATCTCGACGGCAT TERM 1742 1846956 - 1846934 - g 70 -7.6 -4.08485 | overlap 1846936 CTGACGTAAAGGAAA GAGCCATGCG TTA CGCAGGGCTG AAGAAATACTTCATC TERM 1743 1846954 - 1846936 - g 70 -10.2 -3.63425 | overlap 1846934 GACGTAAAGGAAAGA GCCATGCG TTA CGCAGGGC TGAAGAAATACTTCA ilvA 1845997 - 1847211 + | threonine dehydratase RHE_CH01760 1847249 - 1847575 + | hypothetical protein TERM 1744 1847900 - 1847910 + G 90 -2.4 -5.40072 | TTTCCGCCATCGGCT CGGC CTC GGCG TTTTTTTGACGGCGC TERM 1745 1849057 - 1849028 - g 95 -16.5 -3.91716 | gap 1 CTACGCGGCAAAGAA GAGCGGCCG-CAAC TGC GTCGTCGGCCGCTC GTCATCATGAAATCC RHE_CH01761 1847811 - 1849067 + | putative sensory box/GGDEF family protein RHE_CH01762 1849868 - 1849092 - | oxidoreductase protein RHE_CH01763 1849974 - 1850549 + | TetR family transcriptional regulator TERM 1746 1850580 - 1850547 - T 95 -14.5 -3.95073 | overlap 1850550 1850554 GCCGATATCGAGAAA TGACGAACGGCCGGC ACGT GCCGGCCGTTCAACG AGGGTTGAAAGCCGA TERM 1747 1850577 - 1850550 - T 95 -19.2 -3.03459 | overlap 1850547 1850554 GATATCGAGAAATGA CGAACGGCCGGC ACGT GCCGGCCGTTCA ACGAGGGTTGAAAGC TERM 1748 1850573 - 1850554 - T 90 -16.4 -3.35467 | overlap 1850550 1850547 TCGAGAAATGACGAA CGGCCGGC ACGT GCCGGCCG TTCAACGAGGGTTGA acpD 1851210 - 1850596 - | [acyl-carrier-protein] phosphodiesterase protein TERM 1749 1851111 - 1851121 + g 78 -4.6 -4.6902 | overlap 1851083 1851067 1851118 GGACGACGACGCTGC CCGG CTT CTGG TTTTTCAGCTTCTCG TERM 1750 1851395 - 1851412 + G 76 -9.1 -4.08216 | CAGGTGTTTCTGACT GTTGCCG AGAC CGGCAGC TTTTCGGCCGCGTCG TERM 1751 1852303 - 1852275 - g 73 -10.9 -3.57263 | overlap 1852255 1852276 ATTTCCATGCGGAAA TGGCGGAACTGCG TGA CGCCATTCCGCCG CTTGCGGCCGAATGA TERM 1752 1852302 - 1852276 - g 75 -14.4 -2.74144 | overlap 1852255 1852275 TTTCCATGCGGAAAT GGCGGAACTGCG TGA CGCCATTCCGCC GCTTGCGGCCGAATG RHE_CH01765 1851350 - 1852318 + | LysR family transcriptional regulator TERM 1753 1852342 - 1852319 - T 78 -14.6 -2.70932 | opp_overlap 1852323, overlap 1852323 CTTGCGGCCGAATGA GGAAGACGCG GAGC CGCGCCTTCC TCCAAATTCCACCCC cpdB 1854345 - 1852357 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 1754 1853062 - 1853008 - G 74 -14.9 -2.63301 | opp_overlap 1853039 1853061 GACATCGGTATAGTA GTCGGCGCCGCC-GCGGCCGCCCGCCT TGA AGG-GGGCCGCCGCTGAAAGCACCGGC AGATCCTTGTACGCG RHE_CH01767 1855030 - 1854626 - | hypothetical protein TERM 1755 1855193 - 1855158 - R 82 -8.3 -4.58395 | gap 2, opp_overlap 1855178, overlap 1855161 1855164 GCTATGCGGCAAAAA CAATGACGCAACGCCGG CTAG CCGGCGTCGCG-CAG-G TCCAATGCGATGCGG TERM 1756 1855191 - 1855161 - R 100 -15.5 -4.40963 | gap 1, opp_overlap 1855178, overlap 1855158 1855164 ATGCGGCAAAAACAA TGACGCAACGCCGG CTAG CCGGCGTCGCG-CA GGTCCAATGCGATGC TERM 1757 1855189 - 1855164 - R 90 -18.3 -3.17725 | opp_overlap 1855178, overlap 1855161 1855158 CGGCAAAAACAATGA CGCAACGCCGG CTAG CCGGCGTCGCG CAGGTCCAATGCGAT RHE_CH01768 1856083 - 1855175 - | hypothetical protein aldR 1856616 - 1856155 - | AsnC family leucine-responsive regulatory protein aldA 1856773 - 1857891 + | alanine dehydrogenase protein TERM 1758 1857917 - 1857944 + T 100 -17.8 -4.28188 | gap 1, opp_overlap 1857917 TCAACGTCAAGCGAA GGCGCCGGTCTCT GTC AGAG-CCGGCGCC TTTATCTTGTCGATC TERM 1759 1857944 - 1857917 - T 90 -17.8 -3.19246 | gap 1, opp_overlap 1857917 TCAACGTCAAGCGAA GGCGCCGGTCTCT GTC AGAG-CCGGCGCC TTTATCTTGTCGATC RHE_CH01771 1858417 - 1857908 - | hypothetical protein RHE_CH01772 1859240 - 1858680 - | putative acetyltransferase protein sseA 1860115 - 1859246 - | thiosulfate sulfurtransferase protein alaS1 1860869 - 1860108 - | alanyl-tRNA synthetase protein cysK2 1861913 - 1860876 - | cysteine synthase A chrR 1862137 - 1862796 + | transcriptional activator (anti-sigma factor) protein RHE_CH01777 1862896 - 1863720 + | oxidoreductase protein TERM 1760 1863825 - 1863808 - T 86 -10.5 -4.34402 | opp_overlap 1863808 GCCGTGACATGAAAA GGCCGGC ATAA ACCGGCC TTTTCAGAGGGGGTG TERM 1761 1863808 - 1863825 + T 79 -9.8 -4.07885 | opp_overlap 1863808 GCCGTGACATGAAAA GGCCGG CATAAA CCGGCC TTTTCAGAGGGGGTG RHE_CH01778 1864206 - 1863880 - | hypothetical protein RHE_CH01779 1864519 - 1865184 + | haloacid dehalogenase-like hydrolase narB 1867871 - 1865214 - | nitrate reductase large subunit protein TERM 1762 1865789 - 1865802 + g 72 -3.7 -4.65895 | CGCGGAAGGGGCGGA CGGCG ACGG CGACG TTTTTCGATGCCGGC nirD 1868200 - 1867871 - | nitrite reductase [NAD(P)H], small subunit protein nirB 1870661 - 1868211 - | nitrite reductase [NAD(P)H], large subunit protein RHE_CH01783 1871921 - 1870680 - | nitrate transporter protein TERM 1763 1871979 - 1872031 + r 80 -11.1 -3.78775 | opp_overlap 1871979 GGGTTAAAACAAAAA GCCGCTGGTCAGGACGCGCTTGCAC GAG GCGCGCGAATATCCTGATCAGCGGC TTTGCTGGTGGCGCC TERM 1764 1872031 - 1871979 - R 100 -11.1 -5.45802 | opp_overlap 1871979 GGGTTAAAACAAAAA GCCGCTGGTCAGGACGCGCTTGCAC GAG GCGCGCGAATATCCTGATCAGCGGC TTTGCTGGTGGCGCC nrtCch 1873676 - 1872405 - | nitrate ABC transporter, ATP-binding protein TERM 1765 1873475 - 1873461 - G 73 -11.4 -3.60098 | ATGGGCGATGTCAAA CTGGCG AAA CGCCAG GCGGTCGCGAACATT nasT 1874307 - 1873720 - | two-component response regulator protein gntR 1875395 - 1874391 - | LacI family transcription regulator TERM 1766 1875060 - 1875072 + g 80 -6.2 -4.72497 | opp_overlap 1875060 1875059 CCTCTGTCCGAGAAG CGCC TTGAT GGCG TTTTCTTCCTCGATC TERM 1767 1875457 - 1875505 + H 77 -11.4 -3.5489 | opp_overlap 1875461, overlap 1875459 TAACACTGCCGCGAC TATAGTTGATAGCGCTAG-CAAAT CCG GTTTGACT-GCGCTGTCAACTATG TTAATTTGCAATTGT TERM 1768 1875459 - 1875503 + H 77 -11.8 -3.34267 | opp_overlap 1875461, overlap 1875457 ACACTGCCGCGACTA TAGTTGATAGCGCTAG-CAAAT CCG GTTTGACT-GCGCTGTCAACTA TGTTAATTTGCAATT TERM 1769 1875589 - 1875579 - H 74 -4.6 -4.68539 | overlap 1875581 AGCAAAAGCATAAAA GAGG CGG CCCC GTTCGCCTGAGGAGG rbsBch2 1875614 - 1876753 + | ribose ABC transporter, substrate-binding protein TERM 1770 1876794 - 1876773 - f 78 -14.5 -2.62184 | overlap 1876756 CTTCCTCTGATATGA TTGCGGGTG TTCG CACCCGCAA TCCTGGCCGTGTCAG rbsAch2 1876830 - 1878368 + | ribose ABC transporter, ATP-binding protein TERM 1771 1879143 - 1879196 + G 100 -20.4 -4.09739 | gap 1, overlap 1879136 1879144 1879183 ATTCGATTGCGGCGG TGGTGCTCGGCGGCGTTTCCCTTGC GGGCG GCAAGGGGAGTGCCGTCG-GCGCCG TTTTCGGAGCCTTGG TERM 1772 1879144 - 1879195 + G 100 -21.7 -3.05522 | gap 1, overlap 1879136 1879143 1879183 TTCGATTGCGGCGGT GGTGCTCGGCGGCGTTTCCCTTGC GGGCG GCAAGGGGAGTGCCGTCG-GCGCC GTTTTCGGAGCCTTG rbsCch2 1878365 - 1879360 + | ribose ABC transporter, permease protein rbsCch3 1879357 - 1880337 + | ribose ABC transporter, permease protein TERM 1773 1880722 - 1880743 + G 73 -8.7 -4.07568 | gap 1 CTTCCATGATTGGAT CGGCAACGGC TGG GCCG-TGCTG TTTTCGCACCCGAAG RHE_CH01791 1880642 - 1881301 + | anti-oxidant AhpCTSA family protein TERM 1774 1881327 - 1881351 + F 100 -15 -4.7497 | gap 1, overlap 1881349 CAAGTCCGTTCCGAA GCCGCCGCGGC CAAC GCC-CGGCGGC TTTTTCATGCCTACA TERM 1775 1881481 - 1881520 + G 73 -3.6 -4.77036 | gap 1, overlap 1881483 1881488 1881489 1881491 TCAGTCCGGCATTGT GAGGAGATC-GGCGAAGGC GCT GTTTTCGCTGGGTTTCCTG TTTTTCGTCCTAAAC RHE_CH01792 1881449 - 1882405 + | glycosyltransferase TERM 1776 1882976 - 1883015 + G 100 -13.6 -4.3467 | gap 1 TTCATCCCGGCCACA TTGTCGGCCGCGGATGGGC GCC GCTCAATC-CGGCCGGCAA TTTTAATCTGCAGGT RHE_CH01793 1882501 - 1883454 + | hypothetical protein ttuD 1884736 - 1883471 - | hydroxypyruvate reductase protein RHE_CH01795 1884931 - 1885230 + | hypothetical protein RHE_CH01796 1885380 - 1885784 + | hypothetical protein RHE_CH01797 1886197 - 1885838 - | hypothetical protein TERM 1777 1886385 - 1886418 + r 70 -12.4 -2.71712 | opp_overlap 1886388 1886404, overlap 1886384 1886388 GCCGAGGTCTTCAAG TAAGGGGGGCGCAG CAAAGC CAGCGCCCCGCTTA ATTTAAAGGCGGGAA TERM 1778 1886415 - 1886388 - R 74 -11.2 -3.34013 | gap 1, opp_overlap 1886385 1886384 1886388, overlap 1886404 GAGGTCTTCAAGTAA GGGGGGCGC-AGC AAA GCCAGCGCCCCGC TTAATTTAAAGGCGG TERM 1779 1886388 - 1886415 + r 70 -9.7 -3.51232 | opp_overlap 1886388 1886404, overlap 1886385 1886384 GAGGTCTTCAAGTAA GGGGGGCGCAG CAAAGC CAGCGCCCCGC TTAATTTAAAGGCGG RHE_CH01798 1887341 - 1886421 - | hypothetical protein TERM 1780 1886991 - 1886967 - G 74 -12.9 -3.38316 | CGACGATGCAAGGAA TCCGGCGACAA AGA TCGTCGCCAGA GCCCAGCTTATGAAA RHE_CH01799 1887740 - 1888066 + | hypothetical protein RHE_CH01800 1888247 - 1888582 + | hypothetical protein RHE_CH01801 1888995 - 1888615 - | hypothetical protein RHE_CH01802 1889285 - 1889488 + | hypothetical protein TERM 1781 1889705 - 1889727 + F 83 -9.1 -4.52589 | opp_overlap 1889707 CACCACCCGCGACCA CACCAGCGG CGCGT CGGCTGGTG TTTTCTGTAAGCAGG RHE_CH01803 1889804 - 1890118 + | hypothetical protein TERM 1782 1890161 - 1890185 + F 83 -12.1 -3.74347 | opp_overlap 1890157, overlap 1890180 1890182 GCGCTCAACAAGCGC GCCGCCGGT CTCACTT GCCGGCGGC TTTGCCGTTTCTCGC TERM 1783 1890182 - 1890192 + F 71 -8.2 -3.87373 | opp_overlap 1890157, overlap 1890161 1890180 GGTCTCACTTGCCGG CGGC TTT GCCG TTTCTCGCCACTGTG TERM 1784 1890457 - 1890472 + F 74 -3.2 -5.00884 | opp_overlap 1890451, overlap 1890451 1890450 AATACAAATGCTTGC CCGATT TGCC AAGCGG TTTTTTCAAAAAAAT RHE_CH01805 1890531 - 1890848 + | hypothetical protein RHE_CH01806 1890943 - 1891230 + | hypothetical protein RHE_CH01807 1891622 - 1891284 - | hypothetical protein pcm1 1892794 - 1893459 + | protein-L-isoaspartate O-methyltransferase protein TERM 1785 1893488 - 1893506 + F 100 -17.4 -4.07124 | GGGGAATTCGAGCGA CGGGCGCC ATT GGCGCCCG TTTCTGTCAGTGCTG TERM 1786 1894298 - 1894259 - g 82 -14.2 -3.34398 | gap 1, opp_overlap 1894271 1894279, overlap 1894257 GCGTTTGCCGAAACA CTGCAGGCCACAGCCGCCG AGC CGGCCGCTGTTGCC-GCCG AAACTGCGCCGCCGG TERM 1787 1894558 - 1894603 + G 86 -4.6 -5.24129 | gap 1, opp_overlap 1894564, overlap 1894563 ACGGCTGGTGCGCGA GGAAATCGAGCGTGTGGCGCG CGGCC CGCGCCGC-TGATCGGATTGC TTTTTTCTGGAAAAG RHE_CH01810 1893725 - 1894594 + | hypothetical protein TERM 1788 1894611 - 1894647 + F 100 -20.3 -3.17723 | opp_overlap 1894618, overlap 1894618 CGGATTGCTTTTTTC TGGAAAAGCCGCTCCGG TCT CCGGGGCGGCTTTTTTA TTGACTTGGCCGTGG TERM 1789 1894618 - 1894640 + F 100 -18.4 -5.5074 | opp_overlap 1894618, overlap 1894611 CTTTTTTCTGGAAAA GCCGCTCCGG TCT CCGGGGCGGC TTTTTTATTGACTTG TERM 1790 1894640 - 1894618 - f 100 -16.2 -4.07568 | opp_overlap 1894611 1894618 CTTTTTTCTGGAAAA GCCGCTCCGG TCT CCGGGGCGGC TTTTTTATTGACTTG valS 1894712 - 1897555 + | valyl-tRNA synthetase TERM 1791 1897588 - 1897610 + F 100 -20.6 -5.04325 | opp_overlap 1897588 GTAAGTTATTTCAAA GACGCGCCCG CTT CGGGCGCGTC TTTTTGTCGTTTGGG TERM 1792 1897610 - 1897588 - f 100 -20.6 -3.6215 | opp_overlap 1897588 GTAAGTTATTTCAAA GACGCGCCCG CTT CGGGCGCGTC TTTTTGTCGTTTGGG TERM 1793 1897819 - 1897834 + F 77 -7.6 -4.46112 | TATTAACCAGATTTT TTGACG TGTC CGTCAA TTTCTTTACGTAAGC TERM 1794 1898415 - 1898435 + G 74 -2.4 -4.83169 | overlap 1898419 TGTCGGCCCTGGGCA GCTTCGCT TCATT GGCGGCGC TTTTTATCAGGAAGT RHE_CH01812 1897954 - 1899201 + | outer membrane protein TERM 1795 1899249 - 1899219 - f 77 -11 -3.62046 | opp_overlap 1899221 1899224 1899238, overlap 1899220 1899223 CCACGTTCTGAAGAA TTGAGGAGCCCGGC ACT GCCGGGCTCTTCTT TATGCGCGCCCGTTA TERM 1796 1899248 - 1899220 - f 79 -14.5 -2.77013 | opp_overlap 1899221 1899224 1899238, overlap 1899219 1899223 CACGTTCTGAAGAAT TGAGGAGCCCGGC ACT GCCGGGCTCTTCT TTATGCGCGCCCGTT TERM 1797 1899221 - 1899247 + F 100 -20.2 -3.85817 | opp_overlap 1899220 1899219 1899223, overlap 1899224 1899238 ACGTTCTGAAGAATT GAGGAGCCCGGC ACT GCCGGGCTCTTC TTTATGCGCGCCCGT TERM 1798 1899245 - 1899223 - f 80 -14.8 -2.6563 | opp_overlap 1899221 1899224 1899238, overlap 1899220 1899219 GTTCTGAAGAATTGA GGAGCCCGGC ACT GCCGGGCTCT TCTTTATGCGCGCCC TERM 1799 1899224 - 1899244 + F 100 -18.3 -4.06419 | opp_overlap 1899223 1899220 1899219, overlap 1899221 1899238 TTCTGAAGAATTGAG GAGCCCGGC ACT GCCGGGCTC TTCTTTATGCGCGCC TERM 1800 1899482 - 1899499 + G 78 -4.7 -4.78848 | overlap 1899473 1899483 GGCGCAAGTGGCGAC AGCCGCG TGAT TGCGGCC TTTTCTCTTTCCGGG RHE_CH01813 1899251 - 1899895 + | hypothetical protein exoR2 1899915 - 1900709 + | exopolysaccharide production negative regulator protein xthA2 1901589 - 1900798 - | exodeoxyribonuclease III protein TERM 1801 1901787 - 1901762 - R 83 -11.2 -3.9398 | gap 1, opp_overlap 1901762, overlap 1901753 GGACAAGCCGATAAA CCGGCTGGAAG CAATT CTTCC-GCCGG TCGTTGGGGACAACG TERM 1802 1901789 - 1901802 + r 71 -6.7 -4.2803 | AATTCTTCCGCCGGT CGTTG GGGA CAACG TTTTGCGTTCGGATA RHE_CH01816 1902151 - 1901819 - | hypothetical protein TERM 1803 1902269 - 1902293 + H 71 -9.1 -3.74251 | opp_overlap 1902269 CCATGATGTGCGAAA CGGCTCGGCGG GTG CCGCTTTGCCG TTTCGTCGGGCTATA dgt 1902373 - 1903590 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein argS 1903654 - 1905411 + | arginyl-tRNA synthetase TERM 1804 1906910 - 1906889 - g 76 -8.7 -4.18018 | gap 1, overlap 1906894 GCGCCGCAGCCAAAA GCACAGCCGG CGC CCG-CCGTGC ACCAGCAGGCAACGC RHE_CH01819 1905473 - 1908664 + | hypothetical protein TERM 1805 1908685 - 1908713 + F 100 -21.7 -5.28176 | opp_overlap 1908679 1908687 GTCATTGAATTATGA GAGCGGCGGGCCG GAT CGGACCGCCGCTC TTTTTTGTGCATCGC TERM 1806 1908711 - 1908687 - f 93 -18.5 -2.8664 | opp_overlap 1908685, overlap 1908679 CATTGAATTATGAGA GCGGCGGGCCG GAT CGGACCGCCGC TCTTTTTTGTGCATC RHE_CH01820 1908718 - 1909788 + | beta-N-acetylhexosaminidase protein RHE_CH01821 1909852 - 1910664 + | hypothetical protein RHE_CH01822 1910829 - 1911365 + | putative transcriptional regulator protein tatA 1911548 - 1911739 + | twin argininte translocase protein A TERM 1807 1911769 - 1911755 - f 75 -9.2 -4.09739 | CCAAGTCCGGGAAAA GCGCAG CCC CCGCGC TTCCCGTCCAGGAGC tatB 1911790 - 1912410 + | sec-independent translocase TERM 1808 1912468 - 1912493 + G 88 -7.6 -4.95957 | gap 1, opp_overlap 1912460, overlap 1912460 TAATGGAGCTGCGCA CGCGGCTGATC TGGTC GATCGGC-GCG TTTTTCGTTGCTTTC TERM 1809 1913244 - 1913197 - g 77 -4.1 -4.85782 | gap 2 CGCTCGAAAAAGAAA CCGGAT--CCGCGGACGTTGCCA AGAC CGACAGCGTCTGAGGCGATCCGG AAGCCTTTTTATGAC tatC 1912455 - 1913234 + | SEC-independent protein translocase protein TERM 1810 1913277 - 1913303 + F 73 -8.6 -4.1891 | overlap 1913263 1913278 1913280 CGCCTCATCCGGTTG AGGCCCGGTCAG GCT TTGGCCGGGTCA TTTCTGTTGCAACGA TERM 1811 1913278 - 1913302 + F 74 -12.1 -3.11024 | overlap 1913263 1913277 1913280 GCCTCATCCGGTTGA GGCCCGGTCAG GCT TTGGCCGGGTC ATTTCTGTTGCAACG TERM 1812 1913280 - 1913300 + F 71 -11.1 -3.11182 | overlap 1913263 1913278 1913277 CTCATCCGGTTGAGG CCCGGTCAG GCT TTGGCCGGG TCATTTCTGTTGCAA TERM 1813 1913463 - 1913438 - g 71 -6.1 -4.25104 | gap 1, overlap 1913459 1913462 CGCCCTCGATGAAAA GCGCCGCTCCGC CGT GCAGAA-GACGC AGGATCTGCTCTCCC serS 1913331 - 1914614 + | seryl-tRNA synthetase TERM 1814 1915202 - 1915218 + G 74 -10.1 -3.77831 | overlap 1915214 TGCAGGTCGATGCCC GCTCCGA CGG TCGGGGC TTTCCCTATTACTGG surE 1914619 - 1915392 + | stationary phase survival protein SurE pcm 1915389 - 1916042 + | protein-L-isoaspartate O-methyltransferase lppB 1916182 - 1917771 + | lipoprotein precursor protein TERM 1815 1917823 - 1917790 - T 78 -14.7 -2.53012 | gap 1, opp_overlap 1917792 1917797, overlap 1917797 AAGCGTACCAGGAAG CG-CAAAAGCCCGGCC ACC AGCCGGGCTTTTGTCA TTTTGGACCGTCTTG TERM 1816 1917792 - 1917820 + T 95 -19 -3.08508 | opp_overlap 1917790 1917797, overlap 1917797 GCGTACCAGGAAGCG CAAAAGCCCGGC CACCA GCCGGGCTTTTG TCATTTTGGACCGTC TERM 1817 1917815 - 1917797 - T 95 -13.8 -4.20696 | opp_overlap 1917792 1917797, overlap 1917790 CCAGGAAGCGCAAAA GCCCGGCC ACC AGCCGGGC TTTTGTCATTTTGGA TERM 1818 1917797 - 1917815 + T 95 -13.1 -4.67635 | opp_overlap 1917797 1917790, overlap 1917792 CCAGGAAGCGCAAAA GCCCGGC CACCA GCCGGGC TTTTGTCATTTTGGA RHE_CH01830 1918730 - 1917858 - | hypothetical protein TERM 1819 1917931 - 1917943 + g 70 -10.5 -3.66028 | opp_overlap 1917920, overlap 1917930 GCAACGCGGCCCGAG CGCGC ACC GCGCG TTGTTGCCCATTCTA TERM 1820 1918915 - 1918896 - H 71 -4.8 -4.66833 | overlap 1918897 1918899 CGGCAACCTGAAAAA CGAGGCGG AGTT CCGCCGCC AAGCCTGAGGAGTTT yajC 1918934 - 1919281 + | preprotein tranlocase protein TERM 1821 1920677 - 1920701 + G 78 -6.3 -4.63184 | AGAAAACCGCCCATT CCTTTGCCGAC GCC GTCGGTCGGGG TTTTTCGCGTGCCTT secD2 1919326 - 1921866 + | bifunctional preprotein translocase subunit SecD/SecF RHE_CH01833 1921871 - 1922257 + | hypothetical protein TERM 1822 1922362 - 1922352 - gf 79 -8.2 -4.26903 | opp_overlap 1922356 1922359, overlap 1922353 CTCACCGGAGGAAAA GCGC GGC GCGC TTGCAGCCCTTTATG TERM 1823 1922695 - 1922752 + GF 86 -16.1 -3.18023 | gap 1, overlap 1922722 1922747 CTTTCGCCGGAGGAG GCCCCGCGATCGGC-GGATGCCGCCGGC CAT GCCGGCGTCGCACAGGCGATTGCCGGGC TGTTGCTGCTGATGC crtB 1922260 - 1923105 + | phytoene synthase protein RHE_CH01835 1923054 - 1923644 + | hypothetical protein gidA1 1925087 - 1923654 - | tRNA (uracil-5-)-methyltransferase Gid TERM 1824 1924787 - 1924770 - G 89 -12.7 -4.14243 | CACGGCATCCGAAAA GCCGTCG CGAT CGACGGC GAGCGCGCCGCCGGC TERM 1825 1925159 - 1925140 - R 100 -12.1 -4.8622 | opp_overlap 1925140 CCCCGGAATCAAAAA CGGCGCC CCTGAT GGCGCCG TCTTGAAACGTCGTG TERM 1826 1925140 - 1925159 + r 73 -12.1 -3.03441 | opp_overlap 1925140 CCCCGGAATCAAAAA CGGCGCC CCTGAT GGCGCCG TCTTGAAACGTCGTG RHE_CH01837 1925336 - 1925193 - | hypothetical protein TERM 1827 1925301 - 1925311 + g 78 -6.8 -4.62069 | opp_overlap 1925301 GAGCGTACGACGATA GCTG AGC CAGC TTTTTGCGATGCGGA TERM 1828 1925567 - 1925589 + H 100 -16.3 -3.71527 | opp_overlap 1925567 GCTTGCAAAAGAAAA CGCCCGCTG GGATG CAGCGGGCG TTTCAATCATTGGCG TERM 1829 1925589 - 1925567 - H 100 -16.3 -5.07652 | opp_overlap 1925567 GCTTGCAAAAGAAAA CGCCCGCTG GGATG CAGCGGGCG TTTCAATCATTGGCG RHE_CH01838 1925699 - 1926187 + | hypothetical protein TERM 1830 1926243 - 1926274 + F 70 -10.7 -3.30124 | opp_overlap 1926245, overlap 1926244 TCTGTCATTGCATAA AACGCCCGCCGGG GGAGGA TCCGGCGGGCGCA TTATAGCGACTGGCA TERM 1831 1926244 - 1926273 + F 78 -14.2 -2.57931 | opp_overlap 1926245, overlap 1926243 CTGTCATTGCATAAA ACGCCCGCCGGG GGAGGA TCCGGCGGGCGC ATTATAGCGACTGGC TERM 1832 1926272 - 1926245 - f 100 -17 -4.4009 | opp_overlap 1926244 1926243 TGTCATTGCATAAAA CGCCCGCCGG GGGAGGAT CCGGCGGGCG CATTATAGCGACTGG TERM 1833 1927439 - 1927457 + G 72 -11.6 -3.35774 | overlap 1927427 1927440 TTCCCTCGTCAGGAG TGCCGGCG CAG CGCCGGCC TTCTACAGCTTTCTC TERM 1834 1927440 - 1927456 + G 77 -15.1 -2.60982 | overlap 1927439 1927427 TCCCTCGTCAGGAGT GCCGGCG CAG CGCCGGC CTTCTACAGCTTTCT RHE_CH01839 1926684 - 1927778 + | hypothetical protein RHE_CH01840 1927775 - 1928365 + | hypothetical protein TERM 1835 1929852 - 1929836 - g 78 -12.3 -3.71284 | opp_overlap 1929842 1929845 GCGTGAGGAATACAA GACGCTC GCC GAGCGTC GCGTTCGCCTCGGCC TERM 1836 1930187 - 1930166 - g 78 -3.6 -5.06414 | overlap 1930186 CGCCCCGAAGAAAAA GGCTGCCG CCAAGT CAGAAGCC GCCGAGGCTGGCGAA TERM 1837 1930252 - 1930226 - g 76 -5.8 -4.56775 | overlap 1930230 AGCCGCTCCGAAAAA GAAGGCTGCTCC GAA GAAGAAGGCTTC CGAGGACAGCGCCGA tig 1928787 - 1930271 + | trigger factor TERM 1838 1930294 - 1930325 + F 100 -18.1 -4.64766 | opp_overlap 1930298 1930299, overlap 1930299 CCGGTTCTGAAGTTT GAAAGGGCCCCGC CATCGT GCGGGGCCTTTTC TTTTTCGGCTGTCCG TERM 1839 1930321 - 1930298 - f 74 -10.9 -3.60792 | opp_overlap 1930294 1930299, overlap 1930299 TTCTGAAGTTTGAAA GGGCCCCGC CATCGT GCGGGGCCT TTTCTTTTTCGGCTG TERM 1840 1930320 - 1930299 - f 79 -14.4 -2.76261 | opp_overlap 1930294 1930299, overlap 1930298 TCTGAAGTTTGAAAG GGCCCCGC CATCGT GCGGGGCC TTTTCTTTTTCGGCT TERM 1841 1930299 - 1930320 + F 100 -14.4 -5.27023 | opp_overlap 1930299 1930298, overlap 1930294 TCTGAAGTTTGAAAG GGCCCCGC CATCGT GCGGGGCC TTTTCTTTTTCGGCT RHE_CH01843 1930427 - 1930849 + | hypothetical protein RHE_CH01844 1932697 - 1930928 - | hypothetical protein TERM 1842 1932149 - 1932125 - G 76 -13.5 -3.14132 | overlap 1932130 GTCTTTCGGCAGGAA CGGAACCGGCG TGC CGCCGATGCCG GGAAGGTCGTTCATG TERM 1843 1932841 - 1932812 - R 77 -3.4 -5.055 | CTAAGGCGTAAAAAA GGAAGCGCAGAA GTTTCG TGCAGCGCATCC CTCAATATACTACGC RHE_CH01845 1933554 - 1932925 - | hypothetical protein RHE_CH01846 1935146 - 1933710 - | soluble pyridine nucleotide transhydrogenase lldD2 1936557 - 1935370 - | L-lactate dehydrogenase (cytochrome) protein radC 1937433 - 1936609 - | DNA repair protein RadC map1 1938277 - 1937441 - | methionine aminopeptidase RHE_CH01850 1938467 - 1939174 + | TetR family transcriptional regulator RHE_CH01852 1940238 - 1939744 - | holliday junction resolvase protein RHE_CH01851 1939475 - 1939807 + | hypothetical protein RHE_CH01853 1940352 - 1941056 + | metal-dependent hydrolase gatC 1941126 - 1941413 + | glutamyl-tRNA amidotransferase subunit C protein gatA 1941473 - 1942954 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 1844 1944154 - 1944144 - f 74 -6.8 -4.42047 | AGGAAAAAACAACAA GCAG GTT CTGC CACGTCCGAACAAAT RHE_CH01857 1944265 - 1944804 + | hypothetical protein RHE_CH01858 1945317 - 1945027 - | hypothetical protein RHE_CH01859 1945833 - 1945576 - | hypothetical protein TERM 1845 1945915 - 1945950 + H 100 -19 -3.56643 | GGCTTCGTTCTTTCG GGCCCATGCGCGCAAG GAAA CTTGCGGGCAGGGGCC TTTACCGGGTCTCAG RHE_CH01860 1946223 - 1946654 + | acetyltransferase protein RHE_CH01861 1946969 - 1946658 - | putative inner membrane protein TERM 1846 1946928 - 1946910 - G 80 -5.2 -4.90217 | GAAATAGACCAAAAA GACGATGA GGT TCAGCGCC AGAAACAGTGCGGCC gatB 1947116 - 1948618 + | aspartyl/glutamyl-tRNA amidotransferase subunit B RHE_CH01863 1948622 - 1949125 + | acetyltransferase protein TERM 1847 1949400 - 1949385 - g 74 -9 -3.83205 | ATCGTTTATATGAAA GGCTTG GCTT CAAGCC GTCGCATCTCGGCTT RHE_CH01864 1949225 - 1949434 + | putative acetyltransferase protein RHE_CH01865 1949537 - 1949935 + | NADH dehydrogenase RHE_CH01866 1950050 - 1950490 + | hypothetical protein RHE_CH01867 1951591 - 1950629 - | hypothetical protein aat 1952245 - 1951631 - | leucyl/phenylalanyl-tRNA--protein transferase accCch 1953602 - 1952253 - | acetyl-CoA carboxylase biotin carboxylase subunit accBch 1954089 - 1953613 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit aroQ1 1954547 - 1954110 - | 3-dehydroquinate dehydratase RHE_CH01872 1955322 - 1954708 - | outer membrane protein TERM 1848 1954853 - 1954877 + g 81 -15.1 -3.05343 | GCCAGCTGATAGGTC GCCTGAACGAT CCC ATCGTTCGGGC TCTTGGCCATCTCGG TERM 1849 1955179 - 1955217 + g 79 -8.1 -4.27584 | opp_overlap 1955171, overlap 1955184 GAAGAATTCGACGAC GGTCACGTCGCCCTTGG GATTG CCGAGCGTGACGTCATC TTTTGAATTGAAGAT aspB2 1955671 - 1956828 + | aspartate transaminase protein RHE_CH01874 1958184 - 1956871 - | hypothetical protein TERM 1850 1958394 - 1958375 - R 79 -7.8 -4.58663 | AGGATGTCTCAAAAA GAGATGCC TGCC GGCGTCTC AGGTGCGTTCCATCA phbC 1960261 - 1958393 - | poly-beta-hydroxybutyrate polymerase protein TERM 1851 1960045 - 1960065 + g 81 -13.3 -3.70149 | GCGTCTTGACCATGT CGGTCATCG GAT CGATGGCCG TTTCGGTGATCTCGC TERM 1852 1960547 - 1960516 - g 100 -10 -4.7254 | gap 1, opp_overlap 1960543, overlap 1960537 ACGGCGGAGGAAAAA GCCGCAGCCGC-CGC CAA GCGAGCGGCGCCGAC CGCCGTCGTCATGCC RHE_CH01876 1960408 - 1960821 + | hypothetical protein aatCch 1961032 - 1962261 + | aminotransferase thrA 1962323 - 1963648 + | homoserine dehydrogenase TERM 1853 1963672 - 1963696 + F 100 -15.7 -5.1244 | CGCCTGGTAGTATCA GCCGCTCTGTC TCT GGCAGGGCGGC TTTTTCTGTTAATCG TERM 1854 1965009 - 1965033 + G 75 -13.5 -3.02211 | opp_overlap 1964975 GCTCTTCCGCAAGGC GGGGCTCGCGG GGC CCGTGACCCCC TATCATTTCGGCTTC TERM 1855 1965868 - 1965832 - g 74 -14.3 -2.56596 | opp_overlap 1965827, overlap 1965828 CTTCTCATCAACTCA CGCGGCGCGAGCCTCCA TGT CGCAGGCTCGCTCGGCG CTGAACATTATCAAG recJ 1964131 - 1965933 + | single-stranded-DNA-specific exonuclease protein TERM 1856 1966047 - 1966071 + T 72 -10.6 -3.40522 | opp_overlap 1966043 1966047, overlap 1966044 TAACCGATAGACGAA GGGCGCTTCC TTCGT GGTGGCGCCC TTATAGTCAGCACCT TERM 1857 1966446 - 1966470 + T 72 -10.6 -3.40522 | opp_overlap 1966442 1966446, overlap 1966443 TAACCGATAGACGAA GGGCGCTTCC TTCGT GGTGGCGCCC TTATAGTCAGGCACT TERM 1858 1966542 - 1966526 - T 88 -4.3 -5.40474 | overlap 1966527 ATTTTTTCAAAAAAA TGGCAGA TAT TCCGCCT GCACGGTTATTTGAG RHE_CH01883 1967704 - 1966649 - | hypothetical protein TERM 1859 1966927 - 1966952 + g 70 -11.9 -3.25088 | opp_overlap 1966926 1966929, overlap 1966920 1966931 ATGTGACGATGACAG GACGGCCGAAA TGGC TTTCGACCGTC TTGATCACTTTCAGC TERM 1860 1967882 - 1967856 - R 89 -11.6 -4.24002 | CCCGAAATCGCAAAA GCCGCAAGTTTC GCA AAAGCTTGCGGC CAAAACCCTTACCAG gloA 1968331 - 1967891 - | lactoylglutathione lyase methylglyoxalase protein cspA3 1968526 - 1969104 + | cold shock protein TERM 1861 1969140 - 1969154 + F 100 -11.4 -5.84381 | opp_overlap 1969140 TCTATGCGATCAGAA GCGCCA TCA TGGCGC TTTTTTTCTTGGTCG TERM 1862 1969154 - 1969140 - f 75 -11.4 -3.41602 | opp_overlap 1969140 TCTATGCGATCAGAA GCGCCA TCA TGGCGC TTTTTTTCTTGGTCG RHE_CH01886 1969196 - 1969591 + | hypothetical protein RHE_CH01888 1970367 - 1970672 + | NADH-ubiquinone oxidoreductase protein RHE_CH01890 1971157 - 1971504 + | hypothetical protein RHE_CH01891 1972176 - 1971784 - | hypothetical protein TERM 1863 1972269 - 1972213 - R 70 -10.5 -3.25177 | CGCGAAAAAATCACA GCGCGCGGATGGGATCGCCGCTCGGGC TTC GCCCTCCCAGCTTGCTCATCCACGCGC TGAAGCAACCGAAGT RHE_CH01892 1974485 - 1972383 - | putative RTX toxin hemolysin-type calcium-binding protein TERM 1864 1973703 - 1973730 + g 71 -8.3 -3.87104 | overlap 1973697 1973698 GCTGAGTTCGCCGCG CCAGGTGCCGC TGTTCT GCGGGTCCTGG TTGTTGTGGTATGCG TERM 1865 1973906 - 1973920 + g 74 -2.1 -4.88388 | gap 1, overlap 1973906 1973907 TGATGCCGTTGCCGT C-GGTG TGCT CACCAG TTTTTGTGACGTTGT RHE_CH01893 1974924 - 1974721 - | hypothetical protein RHE_CH01894 1976074 - 1975712 - | hypothetical protein TERM 1866 1976207 - 1976179 - R 72 -10.3 -3.53224 | CATCCCCGTGGTAAA TGCCGGACGGC AAGGCCG GCCATCCGACA GCGCCAAAAGCTGAT TERM 1867 1976819 - 1976774 - R 100 -14.1 -5.35224 | gap 1 TGCATAAAAACAAAA GCTTAGAGCGGTTCTGCGCCTC CAT GAAA-GCTGAACCGCTCTAGGC ATTGCCGGGACTGCG TERM 1868 1977004 - 1976986 - R 100 -16 -3.92324 | opp_overlap 1976988 CCGCTGAACATGAAA GACCCGCC TGC GGCGGGTC TTAAACAAGTTCAGC TERM 1869 1976988 - 1977002 + r 75 -12.8 -3.03159 | opp_overlap 1976986 GCTGAACATGAAAGA CCCGCC TGC GGCGGG TCTTAAACAAGTTCA aapP 1977801 - 1977028 - | general L-amino acid ABC transporter, ATP-binding protein aapM 1978964 - 1977819 - | general L-amino acid ABC transporter, permease protein TERM 1870 1978282 - 1978268 - G 71 -5.6 -4.25104 | overlap 1978235 CGGCCGGCAGGAAAA GCGGCA GCA TGACGC TCGCCATGAACAGGA TERM 1871 1978534 - 1978520 - G 72 -7.8 -4.17987 | GAAAGAAGGAAATAA TCGGCA GCA CGCCGA AGAGCAGGAGGGCAT TERM 1872 1978645 - 1978610 - G 79 -8.2 -4.27443 | gap 1, overlap 1978611 GGAGTACGAAAAGAA TGC-CGACCAGCGTTGG GCG CCAGCGCTCGTCGAGCG GATAACGTCCAAAGA TERM 1873 1978644 - 1978611 - G 70 -11.7 -3.15743 | gap 1, overlap 1978610 GAGTACGAAAAGAAT GC-CGACCAGCGTTGG GCG CCAGCGCTCGTCGAGC GGATAACGTCCAAAG aapQ 1980186 - 1978966 - | general L-amino acid ABC transporter, permease protein TERM 1874 1980190 - 1980204 + r 91 -7.1 -5.4505 | CCAATTCCCCATTAT GCTCC TTTTC GGAGC TTTTTTATTGGAGGA TERM 1875 1980217 - 1980246 + r 83 -12.1 -3.77196 | opp_overlap 1980225 AGCTTTTTTATTGGA GGAGGAAAGGCGG TCGC CCGCCTTTCCGGC TTTCCTGCGTGATGC TERM 1876 1980238 - 1980225 - R 75 -9.5 -3.79251 | opp_overlap 1980217 TATTGGAGGAGGAAA GGCGG TCGC CCGCC TTTCCGGCTTTCCTG aapJ 1981311 - 1980265 - | general L-amino acid ABC transporter, substrate-binding protein TERM 1877 1981275 - 1981251 - G 73 -6.4 -4.28254 | gap 1, opp_overlap 1981251 CGCCAAGAGCGAAAA CTGCTGCGCCG ATCG CGGCGGA-CAG AAGCTTGTTCTTCAT metC 1981639 - 1982829 + | cystathionine beta-lyase TERM 1878 1982973 - 1982931 - T 73 -12.6 -2.64412 | overlap 1982916 1982930 1982928 GCGAATCTGAAAGAT CGCGACGCGCCTCAGGCG CTGCGGC CGCCTGCGGCGCCTTACG GCGTGCTCAGAGCCC nah 1984123 - 1982969 - | salicylate hydroxylase protein TERM 1879 1983341 - 1983352 + g 76 -5.8 -4.56597 | GAGCGGCCAGAACGT CAGC TTCG GCTG TTTTTCGAGCAGCGA RHE_CH01901 1984398 - 1984153 - | hypothetical protein TERM 1880 1984603 - 1984613 + G 77 -2.4 -5.00616 | TTACCCATGAGGGAT TGCG GCT CGCC TTTTTTGACGAAGGC RHE_CH01902 1984557 - 1985342 + | hydrolase protein TERM 1881 1985388 - 1985377 - f 75 -2.2 -5.01732 | opp_overlap 1985380 1985381, overlap 1985380 1985381 AATCGTGCTAAAAAA CCAT GGTG ACGG CACCCATTTATGTTA cysE1 1985470 - 1986303 + | serine acetyltransferase protein RHE_CH01904 1986441 - 1986644 + | hypothetical protein TERM 1882 1986667 - 1986691 + F 100 -14.3 -6.12458 | TGAGAACTTGAAGTG GACCGGGCG GCGCAAG CGCCCGGTC TTTTTTGTTTTTTTG RHE_CH01905 1986915 - 1987286 + | hypothetical protein TERM 1883 1987331 - 1987356 + F 100 -15.5 -5.95539 | opp_overlap 1987328 ATATTGAAATACCGG GACCGGCTACG CATC TGTAGCCGGTC TTTTTTTGTTTCCAC TERM 1884 1987397 - 1987407 + F 75 -2.4 -5.12707 | GCGTCCGCTTGGATC GGCC CGG GGAC TTTTTTGGCCTTTCC clpS 1987564 - 1987917 + | ATP-dependent Clp protease adaptor protein ClpS TERM 1885 1990352 - 1990314 - g 74 -13.2 -3.25341 | gap 1, overlap 1990312 1990338 AGCTGAAGACGAAGA CGGCCCGCAAGACCCGT GCCAAG AC-GGTCCCGCAGGCCG AGCCCGAGGTCCGCG clpA 1987928 - 1990417 + | ATP-dependent Clp protease, ATP-binding subunit protein TERM 1886 1990458 - 1990440 - T 90 -8.8 -4.88407 | opp_overlap 1990440 TCACCGAATTAAAAA GGCCGC GTCACCA GCGGCC TTTTTTGTTTCCCTT TERM 1887 1990440 - 1990458 + T 100 -8.8 -5.67283 | opp_overlap 1990440 TCACCGAATTAAAAA GGCCGC GTCACCA GCGGCC TTTTTTGTTTCCCTT RHE_CH01908 1990917 - 1990492 - | HIT family hydrolase RHE_CH01909 1992162 - 1990972 - | hypothetical protein TERM 1888 1992367 - 1992331 - R 75 -6.4 -4.57073 | opp_overlap 1992359, overlap 1992333 1992335 GATCTTGGCCAAAAA GCGAGCATCAAACCGC CACAC GCGGGTCGAAGCCCTC GAAGGTCATCTGGTC RHE_CH01910 1993057 - 1992338 - | glycerophosphoryl diester phosphodiesterase protein RHE_CH01911 1993524 - 1993054 - | putative translation initiation inhibitor protein RHE_CH01912 1993661 - 1994497 + | hypothetical protein rpsB 1994847 - 1995614 + | 30S ribosomal protein S2 tsf 1995854 - 1996780 + | elongation factor Ts TERM 1889 1996838 - 1996804 - f 81 -10.7 -4.1585 | gap 1, opp_overlap 1996809 CCATAATTGGGAAAA CGCCAGGGCATCGCGT GACA ACGCGGTGCCCTT-CG TGTATCGGGCATTCA TERM 1890 1996809 - 1996834 + F 90 -16.9 -3.32022 | opp_overlap 1996804 ATTGGGAAAACGCCA GGGCATCGCGT GACA ACGCGGTGCCC TTCGTGTATCGGGCA pyrH 1996876 - 1997598 + | uridylate kinase frr 1997659 - 1998219 + | ribosome recycling factor TERM 1891 1998349 - 1998334 - f 70 -11.8 -2.70932 | CCGTTGGGCCAAGCA GCGCGG CTTG CCGCGC ACGATGGGCCATCGC uppS 1998353 - 1999000 + | undecaprenyl pyrophosphate synthase protein cdsAch 1999000 - 1999830 + | phosphatidate cytidylyltransferase protein RHE_CH01919 1999859 - 2000986 + | zinc metallopeptidase protein omp1 2001189 - 2003528 + | outer membrane lipoprotein lpxD 2003579 - 2004643 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase fabZ 2004636 - 2005103 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 2005100 - 2005918 + | UDP-N-acetylglucosamine acyltransferase TERM 1892 2006680 - 2006666 - g 77 -12.8 -3.55622 | opp_overlap 2006676 2006679 CTGAACGCTGCGAAA GCCGGC CTT GCCGGC ATCGCGATCGAAGCC RHE_CH01924 2005922 - 2006803 + | hypothetical protein lpxB 2006800 - 2007969 + | lipid-A-disaccharide synthase TERM 1893 2007974 - 2007955 - T 100 -11.4 -5.93252 | opp_overlap 2007955 TTGAAAAAGAAAAAA CCCGGCCA TTCC TGACCGGG TTTATTTTGAGCTCT TERM 1894 2007955 - 2007974 + T 83 -9.2 -4.67651 | opp_overlap 2007955 TTGAAAAAGAAAAAA CCCGGCCA TTCC TGACCGGG TTTATTTTGAGCTCT gltA 2009286 - 2007997 - | type II citrate synthase RHE_CH01927 2009459 - 2012005 + | hypothetical protein lexA 2012657 - 2011986 - | LexA repressor TERM 1895 2012471 - 2012461 - G 86 -8.2 -4.56775 | opp_overlap 2012449 ACGCTCGGCGAAAAA CCGC GAC GCGG TTGAAGGCTGGGATT TERM 1896 2012685 - 2012675 - H 71 -6.8 -4.2828 | opp_overlap 2012675 2012673 GCTCATGGATGAAAA GGAG AAG CTCC TGTTGTTTGCGCGTG TERM 1897 2013477 - 2013492 + G 74 -11.8 -3.45768 | overlap 2013463 TTGTACGCCGGACCC GGCGGC ATTT GCCGCC TTCGTTGGTCTTGCG TERM 1898 2013752 - 2013772 + G 88 -8.2 -4.74103 | overlap 2013753 GCATTCTGGTGAAGC CCACGCCC GGGCA GGGCGTGC TTTTTGCCTTCGAGG TERM 1899 2013753 - 2013771 + G 74 -11.7 -3.4398 | overlap 2013752 CATTCTGGTGAAGCC CACGCCC GGGCA GGGCGTG CTTTTTGCCTTCGAG RHE_CH01929 2012902 - 2013798 + | hypothetical protein kdsA 2013795 - 2014640 + | 2-dehydro-3-deoxyphosphooctonate aldolase eno 2014782 - 2016056 + | 2-phosphoglycerate dehydratase (enolase) protein TERM 1900 2016081 - 2016101 + F 100 -15.4 -5.5604 | AATTCAACGGCTTAA CCCGCGCC CTCCC GGCGCGGG TTTTTTATTGCTTGA TERM 1901 2016476 - 2016448 - g 72 -2.4 -4.7254 | gap 1 ATGCTGGACGAAAAA GCGCGCTATCA GCTGAATA TG-TCGCGCGC CGACGAGATCGTCAT RHE_CH01932 2016193 - 2016513 + | putative septum formation initiator protein TERM 1902 2016504 - 2016534 + F 95 -9.2 -5.18561 | overlap 2016506 CATATTCAACCATTA TTCCAATTAACC TGAATTC GGTTAATTGGGA TTTTTTAAGTATTTC pdhA1 2016659 - 2017705 + | pyruvate dehydrogenase alpha subunit protein TERM 1903 2018088 - 2018045 - g 80 -5.8 -4.71426 | gap 1, overlap 2018050 2018056 TGCCCAGGAAGAAAA GC-CAACGAATACGGGTTCGG CTG CCGCTCCCGTTCCCGCCGAGC CGAAGGCTGCCGTGC pdhA2 2017722 - 2019116 + | pyruvate dehydrogenase subunit beta TERM 1904 2019487 - 2019450 - g 71 -11.1 -3.53444 | opp_overlap 2019484, overlap 2019470 GCATCTGCGCCGAAA GCCGACGCTGCGCCAGC GAAG GCTGAGGCCGCTCCGGC CGCGGCACCGGCACC TERM 1905 2019484 - 2019522 + G 73 -10.8 -3.62096 | opp_overlap 2019450 2019470 AGGCTGAGGCCGCTC CGGCCGCGGCACCGGC ACCTACC GCTGCACCCGCGGCCG TTTCGGCTGGTGGCA pdhB 2019132 - 2020484 + | dihydrolipoamide acetyltransferase protein TERM 1906 2020625 - 2020587 - g 81 -11.8 -3.85864 | opp_overlap 2020581 TCACGAGTACAAGAA TCGCTGGCCGAGCG-TGC TTCAG GCGGCGCTCGGC-AGCGA GGCGCGTATCATCGC TERM 1907 2020794 - 2020806 + G 70 -10.5 -3.55444 | CATGAAGCCGGTCGT GGCGG GCT CCGCC TTTGCCGCCTGCCAG TERM 1908 2020911 - 2020946 + G 73 -8.2 -4.07687 | gap 1, overlap 2020914 2020916 CGTCGCGCCGCCGGC GATCTGCGCGACGGGCA ATG TGCCCTTCGCGGCG-TC TTTTCCCGGCGGAAT TERM 1909 2020914 - 2020944 + G 73 -11 -3.63744 | overlap 2020911 2020916 CGCGCCGCCGGCGAT CTGCGCGACGGGCA ATG TGCCCTTCGCGGCG TCTTTTCCCGGCGGA RHE_CH01936 2020504 - 2021145 + | arylesterase protein RHE_CH01937 2021151 - 2021732 + | putative acetyltransferase protein lpdAch1 2021751 - 2023196 + | dihydrolipoamide dehydrogenase TERM 1910 2023206 - 2023216 + F 82 -8.2 -4.58395 | overlap 2023205 GCTTGAGAATTTTCG GGGC GCC GCCC TTTTTCCGGAGTGGG TERM 1911 2023286 - 2023302 + G 72 -2.1 -4.77438 | overlap 2023287 TCATGTCTATGGAGA CGCAGGC GTT GCTGGTG TTTTTGCTGATCGGT RHE_CH01939 2023273 - 2023527 + | hypothetical protein RHE_CH01940 2023542 - 2023790 + | hypothetical protein TERM 1912 2024207 - 2024170 - g 71 -4.8 -4.43844 | gap 1 GGACGAGCCAGAAAA CGTTGCCAAGG-CCGTC AGGGA GATGGGCCTCAGCCACG TCGTCATCACCTCGG lipA 2023838 - 2024809 + | lipoyl synthase TERM 1913 2024836 - 2024855 + F 84 -7 -4.8622 | opp_overlap 2024836 TGCTTTTTTAGGAAA CCGCAGCG ATTT TGCCGCGG TTTTTCCTTGGGCGG RHE_CH01942 2024877 - 2025455 + | putative DNA topology modulation kinase FlaR-like protein RHE_CH01943 2025465 - 2025917 + | hypothetical protein cinA2 2026437 - 2025937 - | competence-damage associated protein ispDF 2027654 - 2026434 - | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein TERM 1914 2028105 - 2028089 - g 77 -13.7 -3.33162 | opp_overlap 2028099, overlap 2028099 CATTGGATGGCAGAA GCGGCGA AGA TCGCCGC CGATCATGGCGCCGA nifR 2027864 - 2028817 + | tRNA-dihydrouridine synthase protein TERM 1915 2028924 - 2028951 + G 76 -6.2 -4.56597 | overlap 2028925 CGAATCCGGTTTCAT CGCCTTCGCC AATTGGGA GGCGGAGGCC TTTTTCGGCGCCAGC ntrB 2028814 - 2029968 + | nitrogen regulation (two-component sensor histidine kinase) protein ntrC 2029965 - 2031416 + | nitrogen regulation (two-component response regulator) protein TERM 1916 2031451 - 2031423 - T 100 -14.6 -4.63486 | opp_overlap 2031427 ACGGCCTGAAGAAAA GGCGGTGGGC TCCTCGTTT GCCCACCGCC TCCTCCTCCCAGTAT TERM 1917 2031822 - 2031782 - T 78 -11.8 -3.5393 | opp_overlap 2031788 2031796 ATCAGCTTGGCGAAA CGACCGCCGGCACCGCC-CG TCT CGTAGCGGCGACGGCG-CCG GCAAGGAAGCGGGGT RHE_CH01949 2032679 - 2032014 - | hypothetical protein TERM 1918 2032905 - 2032925 + H 71 -11.9 -2.85351 | opp_overlap 2032904 2032903, overlap 2032924 TGCCATAGATTAAGC CGATCGGTC GTT GATCGATCG TGTGCTGTCGAGGCC TERM 1919 2033191 - 2033230 + G 71 -5.7 -4.36914 | gap 1 GAGGCGCTGAAGTCG CTTGGTTGGAGCCG-CGA CAGCT TCGTCGTCTCCAGCAAGG TTTTCTGGGGAGGCC RHE_CH01950 2032984 - 2033973 + | voltage-gated potassium channel beta subunit protein TERM 1920 2034116 - 2034137 + F 95 -13.7 -4.15998 | overlap 2034100 ATCGCGTCGTTCCGA CGCTGGCTC TCAT GAGCCGGCG TTCTTTGGTTTCGGT TERM 1921 2035058 - 2035034 - g 73 -6.4 -4.28994 | CATGATGGAGGAAAA CGCCACCGAA TATCG TTCGATGGAG GCCAACCGCTTTTCG TERM 1922 2036317 - 2036353 + G 70 -7.2 -4.07568 | opp_overlap 2036316 2036318, overlap 2036318 AGATCATCGAGGAAC ATGGCGGGCAGC-TCGAG CTA CACGATGC-GCCCGCCGA TTTTGACCGGGGAAG ntrY 2034192 - 2036459 + | nitrogen regulation (two-component sensor histidine kinase) protein ntrX 2036449 - 2037813 + | nitrogen regulation (two-component response regulator) protein TERM 1923 2038123 - 2038135 + G 71 -4.7 -4.42386 | CTGCGCCGCAACCAT GTCCG CAA CGGCC TTTTCTACCTGCAGG TERM 1924 2038367 - 2038321 - g 81 -11.6 -3.83026 | gap 1 CGCGTCGACATCAAA TCCGTCGGCCTGCTGCCGAAC GCCATG GCGCGCCAGCAGGCCAA-GGA AGCCGGCGCCCAGGA RHE_CH01953 2037874 - 2038737 + | D-amino acid aminotransferase hfq 2038849 - 2039091 + | RNA-binding protein Hfq TERM 1925 2039932 - 2039944 + G 74 -9.1 -3.83205 | GCACCGTCATCCTGT CCGAC ACG GTCGG TTTCATCTCAGACCT hflX 2039169 - 2040494 + | GTP-binding protein TERM 1926 2040653 - 2040624 - T 70 -12.1 -2.57026 | overlap 2040587 2040623 2040627 GACAGGCACAGGAAT CCAGCCACCGCGC GTCT GCGCGGTGAATGA CGCTTATCAAAGCAA mazG 2041561 - 2040716 - | nucleoside triphosphate pyrophosphohydrolase RHE_CH01957 2042169 - 2041582 - | deoxycytidylate deaminase family protein TERM 1927 2042300 - 2042314 + H 72 -6.4 -4.4009 | overlap 2042298 GAACAGGTGGTTGTC GTCAGC ACG GTTGAC TTTTCTCAAATCGCC cysG 2042437 - 2043873 + | uroporphyrin-III C-methyltransferase protein RHE_CH01959 2043876 - 2044190 + | hypothetical protein TERM 1928 2045149 - 2045137 - g 74 -4.7 -4.56597 | opp_overlap 2045138, overlap 2045138 CGCCCGCTGGAAAAA GGCCG ATC CGGCT TTCGCCCGCTGGGTC cysI 2044199 - 2045869 + | sulfite reductase (NADPH) protein RHE_CH01961 2045880 - 2046392 + | hypothetical protein RHE_CH01962 2046568 - 2047641 + | 2-octaprenyl-6-methoxyphenyl hydroxylase mdcF 2048571 - 2047609 - | malonate transporter protein TERM 1929 2048050 - 2048020 - G 77 -13.2 -3.59979 | overlap 2048035 2048036 CTGGTCGATGTGAAA GGCGGCGACGGCAA AGC CTGCCGTCGTCGAC AGGATGAACGGATGC TERM 1930 2048466 - 2048494 + g 80 -14.5 -3.2048 | opp_overlap 2048457 2048463 2048462, overlap 2048467 2048469 2048489 AGATGATGAAAGTGT TCAGCCAGCCGAG CGC CTCGGCCGGCTGC TTCGTCGCCTTTGCG TERM 1931 2048467 - 2048493 + g 86 -18 -2.51966 | opp_overlap 2048457 2048463 2048462, overlap 2048466 2048469 2048489 GATGATGAAAGTGTT CAGCCAGCCGAG CGC CTCGGCCGGCTG CTTCGTCGCCTTTGC TERM 1932 2048469 - 2048491 + g 75 -14.8 -2.79291 | opp_overlap 2048463 2048462, overlap 2048467 2048466 2048489 TGATGAAAGTGTTCA GCCAGCCGAG CGC CTCGGCCGGC TGCTTCGTCGCCTTT ccsA 2049367 - 2048618 - | cytochrome-c-type biogenesis protein TERM 1933 2049203 - 2049176 - G 74 -4.8 -4.59773 | gap 1, overlap 2049162 2049178 2049193 GCCGAGCGTGAAAAA CA-GCGCGGAG AAGAGCA CGCCGCGCCTG ACATCGGGCGCCACC TERM 1934 2049510 - 2049496 - R 71 -4.2 -4.57569 | overlap 2049497 CGATCGCTGGAAAAA GCCGAA TTT TTCGGT TGACCGCAATGGGTC RHE_CH01966 2050185 - 2049670 - | hypothetical protein RHE_CH01967 2050210 - 2050899 + | putative site-specific recombinase, phage integrase family protein TERM 1935 2051177 - 2051190 + T 95 -8.1 -5.37593 | opp_overlap 2051177 2051169 CCGCAAACGAATTAA GGTCC GCAA GGACC TTTTTTCATTTAAAG RHE_CH01968 2052023 - 2051196 - | hypothetical protein RHE_CH01969 2053329 - 2052331 - | putative peptidase protein (caspase-1 like protein) TERM 1936 2052496 - 2052475 - G 74 -14.5 -2.57881 | overlap 2052474 GAATTTCTGCAGAAT GGCGAAGAC AGCA GTCTTCGCC GGATCGGGGGGCGGG TERM 1937 2052657 - 2052674 + g 78 -9.9 -4.07885 | opp_overlap 2052657 CTTTCTTCAATGACA CGAACGT TTGT ACGTTCG TTTTGAACAGGGGTC TERM 1938 2054061 - 2054035 - H 73 -5.1 -4.64676 | overlap 2054039 TGACCTTGAAGAAAA TCAACGCATCC GTGTA GGATGCGTACA GCGCACTTACGCATC TERM 1939 2054057 - 2054039 - H 77 -10.3 -3.82261 | overlap 2054035 CTTGAAGAAAATCAA CGCATCC GTGTA GGATGCG TACAGCGCACTTACG RHE_CH01970 2054207 - 2055280 + | conjugal transfer protein RHE_CH01971 2055367 - 2055819 + | hypothetical protein RHE_CH01972 2055919 - 2056233 + | hypothetical protein RHE_CH01973 2056257 - 2056727 + | hypothetical protein TERM 1940 2057024 - 2057003 - T 89 -13 -3.96387 | opp_overlap 2057002 ACGAACGTAACGAAA CCCACGCC GGTGAA GGCGTGGG GTATTGCGATGAGCC TERM 1941 2057147 - 2057159 + T 71 -7.7 -4.09243 | opp_overlap 2057146 2057147 CAGAATACCAGTAAT TCGAG CAG CTCGA TTTTGCCCGGATCTA TERM 1942 2057238 - 2057226 - T 72 -4.1 -4.74504 | overlap 2057227 AGCTGAATCGAAAAA CGGAA ACC TTCCA CGTTGCGTCAGCGAC TERM 1943 2057342 - 2057381 + T 100 -17.2 -4.48221 | opp_overlap 2057347, overlap 2057348 CTAGTGGGAGATGCA TGAGAGGGGGGCTGTCGC TTCG GCGGTGGCCCCCTTTTCA TTTTGTCACTTCGTC TERM 1944 2057348 - 2057375 + T 100 -14.8 -4.73108 | opp_overlap 2057347, overlap 2057342 GGAGATGCATGAGAG GGGGGCTGTCGC TTCG GCGGTGGCCCCC TTTTCATTTTGTCAC TERM 1945 2057473 - 2057453 - T 100 -11.8 -4.98531 | overlap 2057466 TTGCGAAACGAAAAA CGGGGCCG ACAAA CGACCCCG TCAAAGGAACGATAA htpX1 2058906 - 2058010 - | protease protein, heat-shock-like RHE_CH01975 2060456 - 2058897 - | transport secretion system IV, VirD4 protein TERM 1946 2060088 - 2060069 - G 72 -4.2 -4.56775 | gap 1 AGGTTGCTTCAAAAA GCTC-CCCC TTC GGGTCGAGC ACCACACAGCTGCCC RHE_CH01976 2061850 - 2060798 - | hypothetical protein TERM 1947 2062770 - 2062722 - g 71 -12.6 -3.01712 | gap 2, opp_overlap 2062717 2062766 CCGCGGCCCGCAACA CCATCCTGTACGGCGACTGCATGA CCT TGATGCAG-CGCC-TACAGGGCGG GTCGGTGGATTTCAT TERM 1948 2063092 - 2063074 - g 79 -13.8 -3.53444 | opp_overlap 2063091 CTATGTTCTGGCAAA GGGCGACG CCG CGCCGCCC GCGCAACCGATCGCG RHE_CH01977 2062703 - 2063347 + | DNA-methyltransferase protein (hemagglutinin-associated protein) TERM 1949 2063355 - 2063387 + F 100 -25 -4.82901 | TGGCGTAGCAGTCGG TCGGCCCGACAGCG CAAGC CGCTGTCGGGCCGA TTTTTCTGCGACCGA TERM 1950 2063534 - 2063510 - f 77 -11.5 -3.56821 | opp_overlap 2063510 ACTAGAGGTTGCAAA CGCCAAAACTA TCT TCGTTTTGGCG TTTCAGAGGAAAATA TERM 1951 2063510 - 2063534 + F 75 -11.5 -3.53224 | opp_overlap 2063510 ACTAGAGGTTGCAAA CGCCAAAACTA TCT TCGTTTTGGCG TTTCAGAGGAAAATA TERM 1952 2064806 - 2064820 + G 85 -10 -4.37092 | opp_overlap 2064799 TTTGACAACGGCTCG TTCGCC GGC GGCGAA TTTTATCAGCCCGAT TERM 1953 2064950 - 2064940 - g 86 -6.8 -5.06414 | GGCGGTCAAGAAAAA CGTG TTT CACG CGCTGCGGGCTGAGG RHE_CH01978 2064032 - 2065033 + | hypothetical protein TERM 1954 2065790 - 2065777 - g 73 -3.1 -4.74706 | gap 1 GCGAATATCGAAAAA TGGTGC CGA GC-CCA CAATGCGTTGCTCAT argD2 2065042 - 2066376 + | diaminobutyrate--pyruvate aminotransferase protein RHE_CH01980 2066373 - 2067086 + | putative hydrolase protein TERM 1955 2067426 - 2067462 + G 73 -2.9 -4.68424 | overlap 2067428 CCTGCCGGCATTATT GGCGGCGGTATCGAT AAAGGAA GTCGATGCCGGCGTG TTTTTCGATGCCTTG RHE_CH01981 2067097 - 2068452 + | 2-methylcitrate dehydratase RHE_CH01982 2068514 - 2069320 + | putative permease protein RHE_CH01983 2069810 - 2069514 - | hypothetical protein RHE_CH01984 2070263 - 2071474 + | hypothetical protein RHE_CH01985 2072701 - 2071625 - | hypothetical protein TERM 1956 2072360 - 2072375 + g 76 -9 -4.08692 | overlap 2072330 GTCGTTCATCGAGCC GGCTTC TGTG GAAGCC TTTTCGAAGGCGTTG TERM 1957 2072936 - 2072917 - R 81 -13.6 -3.37464 | GGATCAAGCCCAGAA TGCCCGAC ACAA GTCGGGCA ATCAGGCCAGTCACG RHE_CH01986 2073300 - 2072998 - | hypothetical protein RHE_CH01987 2074172 - 2073297 - | putative integrase protein TERM 1958 2073857 - 2073885 + g 84 -15.9 -3.28712 | GGTTGCGCGTGACCT CGCCGCGTTCGGC GAC GCCGTAGGCGGCG TTGTCGCGGGAGACC TERM 1959 2074070 - 2074098 + g 100 -15.9 -4.21812 | GTTCGAGGAGTTCTT CGGCCATCGCGGC AAG GCCGCGTTGGCGG TTATTTTGGGTGCCG TERM 1960 2074549 - 2074579 + H 71 -8.3 -3.92373 | gap 1, opp_overlap 2074549 2074547, overlap 2074552 TTGCCTAAAAAATGA TGCCGCTTCGTTCC GATC GGAACG-GGCGTCA TTTGTCGGTCACGTG TERM 1961 2074677 - 2074727 + H 72 -10.2 -3.5393 | GCGAGTGACGGACCC GCCGCCGTCCGTACGGTCGGACAT GTG ATGTCCGACCGGTCCCGCCGCTGC TTTGCGCCGGGTGCT TERM 1962 2075164 - 2075128 - H 74 -6.7 -4.41047 | gap 1 ACGCCGGAACCAAAA CGCGCTACAAAT-CAC GAAAAT GAGAATTTGTAGCACG GAGATCGCGGTATGG RHE_CH01988 2075176 - 2075688 + | hypothetical protein RHE_CH01989 2076046 - 2076678 + | hypothetical protein TERM 1963 2076701 - 2076676 - f 72 -9.7 -3.60364 | opp_overlap 2076677 2076678, overlap 2076674 2076678 TTGAGAATAACAAGA TAGCCTTCTCC TAAC GGAGAAGGCCT TTTTTTTCGAGAATG TERM 1964 2076677 - 2076700 + F 100 -11 -5.75945 | opp_overlap 2076676 2076674 2076678, overlap 2076678 TGAGAATAACAAGAT AGCCTTCTCC TAAC GGAGAAGGCC TTTTTTTTCGAGAAT TERM 1965 2076678 - 2076699 + F 100 -14.5 -4.04482 | opp_overlap 2076676 2076674 2076678, overlap 2076677 GAGAATAACAAGATA GCCTTCTCC TAAC GGAGAAGGC CTTTTTTTTCGAGAA TERM 1966 2076699 - 2076678 - f 83 -14.5 -3.36862 | opp_overlap 2076678 2076677, overlap 2076676 2076674 GAGAATAACAAGATA GCCTTCTCC TAAC GGAGAAGGC CTTTTTTTTCGAGAA TERM 1967 2077687 - 2077650 - f 95 -14.2 -4.0044 | gap 1, overlap 2077651 AAGCAGGATGATAAA TCGAAGGG-AGACGCGC GATGA GCGCGTCCACCCTTCGC ATCCGCCAGCTGAAC TERM 1968 2077686 - 2077651 - f 89 -17.7 -2.99541 | gap 1, overlap 2077650 AGCAGGATGATAAAT CGAAGGG-AGACGCGC GATGA GCGCGTCCACCCTTCG CATCCGCCAGCTGAA RHE_CH01990 2077667 - 2078002 + | hypothetical protein TERM 1969 2078041 - 2078012 - T 78 -13.5 -3.16881 | opp_overlap 2078012 2078013 2078024, overlap 2078017 TACTGATGCCACTAA GCCAAGGCGGCCG GTGA CGGTCGCCTTGGA TTCTGCCGGACCGAG TERM 1970 2078012 - 2078041 + T 87 -15.7 -3.28712 | opp_overlap 2078012 2078017, overlap 2078013 2078024 TACTGATGCCACTAA GCCAAGGCGGCCG GTGA CGGTCGCCTTGGA TTCTGCCGGACCGAG TERM 1971 2078013 - 2078040 + T 91 -19.2 -2.57132 | opp_overlap 2078012 2078017, overlap 2078012 2078024 ACTGATGCCACTAAG CCAAGGCGGCCG GTGA CGGTCGCCTTGG ATTCTGCCGGACCGA RHE_CH01991 2078833 - 2078075 - | hypothetical protein TERM 1972 2078538 - 2078549 + g 76 -5.8 -4.64676 | CTGATCTTGTAAGCG CAGG CGAC CCTG TTTTCTTCGCGCTCA TERM 1973 2078935 - 2078962 + r 80 -14.8 -2.52464 | opp_overlap 2078930 2078929 ACCGTACAATCCGGA TAGCCGGTCGCC TTGA GGCGGCCGGCAA TGCATTCAAAGCGCA RHE_CH01992 2079666 - 2079352 - | hypothetical protein TERM 1974 2079719 - 2079699 - H 70 -3.2 -4.79451 | gap 1 ATTTGAAAGAGAAAA CCGAC-GTG CATT CGCTGTCGG CGGGTGGGGCTGCTT TERM 1975 2080667 - 2080651 - g 81 -13.7 -3.54741 | GAGGATTCTGGCAAA CACGGCC AAT GGCCGTG CAATGGCGAAGGCTC TERM 1976 2080763 - 2080751 - g 74 -9.1 -3.84825 | GTGATGGATAGGAAA GCTCG AGG CGAGC CGTGTGCGCGAATTG RHE_CH01993 2080280 - 2080837 + | resolvase protein TERM 1977 2084539 - 2084564 + G 79 -8.3 -4.26076 | gap 1 AGCCAAGTTGATCAT GC-GCGAATTGG CTT CCAATCCGCAGC TTTTCGTGGAGATGA RHE_CH01994 2081423 - 2085139 + | hypothetical protein RHE_CH01995 2086727 - 2085357 - | hypothetical protein RHE_CH01996 2087230 - 2086769 - | hypothetical protein RHE_CH01997 2088893 - 2087205 - | hypothetical protein TERM 1978 2087971 - 2087945 - G 75 -13.7 -3.08996 | opp_overlap 2087940 2087939, overlap 2087930 2087928 CATCTCCATCGAAGA TGCGCAGCGTG TCAAT CCCGCTGCGCA ACAGCATTTCCGCAA RHE_CH01998 2089903 - 2088890 - | hypothetical protein TERM 1979 2088982 - 2089001 + g 73 -6.4 -4.36595 | opp_overlap 2088982, overlap 2088970 CCGCCTTCTCAAGCA GGTTGCTG GCCT TGGCAACC TTTTCAGTTTCGGTC TERM 1980 2089814 - 2089825 + g 76 -7.2 -4.31379 | CAGGTGATCTCGGAC GCCC GTAT GGGC TTTTGATGAATTGGT TERM 1981 2090169 - 2090146 - R 71 -8.8 -3.80019 | opp_overlap 2090145 2090146, overlap 2090147 GTACAAATTGAATAA TGTTGGCAGG ACAG CCCGCCAACG ATTGCTGACTAACTG TERM 1982 2090168 - 2090147 - R 71 -12.3 -2.87289 | opp_overlap 2090146 2090145, overlap 2090146 TACAAATTGAATAAT GTTGGCAGG ACAG CCCGCCAAC GATTGCTGACTAACT RHE_CH01999 2090729 - 2090223 - | hypothetical protein TERM 1983 2090506 - 2090548 + g 73 -7.1 -4.35524 | gap 1, opp_overlap 2090478, overlap 2090508 ATGGGATCCAGCACC CATTCTCTTCCCAG-CGACA AGCA TGTGGCCTCGGAAGAGAACG TTTTCAGTTTAAGCA RHE_CH02000 2091872 - 2090886 - | hypothetical protein TERM 1984 2091590 - 2091570 - GR 72 -9.7 -3.54424 | GCGCAGTTGTGCAAA CGACATACC TTC GGTGTGTCG CGTGAGGATGATAGC RHE_CH02001 2092512 - 2091766 - | hypothetical protein RHE_CH02002 2093047 - 2094999 + | putative plasmid stabilization protein TERM 1985 2095025 - 2095044 + F 90 -8.5 -5.14563 | opp_overlap 2095025 GATACCGACTACCAA GCCCGGG CCAGCA TCCGGGC TTTTTTGCTACCCGG TERM 1986 2095338 - 2095364 + F 100 -15.9 -4.09551 | GATAATCGTGGTATT GAGAGGCCCTC TTCTT GGGGGCCTCTC TTGTTTCTCGAATTT RHE_CH02003 2095616 - 2096098 + | hypothetical protein RHE_CH02004 2096582 - 2096193 - | hypothetical protein RHE_CH02005 2098399 - 2096648 - | putative sensory box/GGDEF family protein RHE_CH02006 2098907 - 2098671 - | hypothetical protein RHE_CH02007 2099368 - 2099072 - | hypothetical protein TERM 1987 2099839 - 2099829 - g 80 -4.6 -4.82901 | GGTCGCTCAGAAAAA CGGC AGA ACCG GTCAGAAGCAGCACG TERM 1988 2100923 - 2100974 + G 71 -4.8 -4.50841 | overlap 2100924 TCTGTTTCATCCTTG GCGGCGGCTGGCGTCGAGCGAGCG CGCT CGCCAGTTCCGCCCGAGCTGCCGG TTTTGATCTTGTTCT RHE_CH02008 2099719 - 2102832 + | hypothetical protein TERM 1989 2104304 - 2104329 + G 74 -11.9 -3.53012 | opp_overlap 2104303 2104302 2104325 CGCGACCGCCAAATT CGAGCATTTCG ACCT CGAAAAGCTCG TTTGGCACAAGCACA RHE_CH02009 2103363 - 2104748 + | putative integrase protein RHE_CH02010 2104914 - 2105297 + | putative insertion sequence transposase protein RHE_CH02011 2105294 - 2105638 + | putative insertion sequence transposase protein TERM 1990 2105703 - 2105683 - f 71 -6.8 -4.34771 | GAAAAGGCAGGAAAA CCGGAGCA AATTG TGCTCTGG TAGGCCTCATGACGC RHE_CH02012 2105712 - 2107304 + | putative insertion sequence transposase protein TERM 1991 2107431 - 2107419 - T 77 -7.7 -4.4648 | overlap 2107423 ACGGTCACCAGAAAA TCGAC CTC GTCGA GGGCAGGATGAGCAA RHE_CH02013 2107859 - 2107554 - | hypothetical protein RHE_CH02014 2109424 - 2107859 - | putative insertion sequence transposase protein RHE_CH02015 2109790 - 2109497 - | putative insertion sequence transposase protein RHE_CH02016 2110203 - 2109841 - | IS66 family insertion sequence transposase protein TERM 1992 2110324 - 2110289 - R 78 -6.2 -4.77036 | gap 1 GCCGATCAGCAAAAA CAGCTCACCGTACGC TCACGAT GCTTAC-GTGAGCCG CATCGCCGGAGATAT RHE_CH02017 2110832 - 2110293 - | hypothetical protein RHE_CH02018 2111121 - 2111462 + | hypothetical protein TERM 1993 2111521 - 2111502 - f 70 -12.2 -2.64274 | opp_overlap 2111500, overlap 2111498 2111499 AGTTCGGGAAAGCGA TGGCGCAA TCTG TTGCGCCA AACATTTCCGTCGGG TERM 1994 2111791 - 2111805 + F 71 -8.5 -3.96327 | overlap 2111782 TCTGATCGTCTGCTG GGGCG TGTTC CGCCC TTTATCATAGCCACT TERM 1995 2112454 - 2112417 - f 81 -14.1 -3.09327 | opp_overlap 2112419 TGAGCGCACGTAAGA GTTAGCTGGCAGGCGGC GCAA GCCGCCTCCCAGCTATT GTTTTCGGGCTACGG TERM 1996 2112419 - 2112452 + F 100 -21.1 -4.18506 | opp_overlap 2112417 AGCGCACGTAAGAGT TAGCTGGCAGGCGGC GCAA GCCGCCTCCCAGCTA TTGTTTTCGGGCTAC TERM 1997 2112553 - 2112535 - f 70 -9.6 -3.52918 | TAACCGCTAAATCAA CCACCACT TGC AATGGTGG GGGGATGTGCATTCT RHE_CH02020 2112576 - 2112908 + | hypothetical protein RHE_CH02021 2114209 - 2113598 - | hypothetical protein RHE_CH02022 2114711 - 2114226 - | hypothetical protein RHE_CH02023 2115079 - 2116572 + | hypothetical protein TERM 1998 2116602 - 2116585 - T 85 -8.4 -4.6902 | overlap 2116577 TGACAAGGCGAAAAA GCCGCT GAGCTA AGCGGC GCGGGAAATGGGCGC RHE_CH02024 2117319 - 2116594 - | hypothetical protein TERM 1999 2116745 - 2116801 + g 84 -8.5 -4.49389 | gap 1, opp_overlap 2116746, overlap 2116746 TAATCGGATCTGGAA ACGGCGCCGGCG-GCCCGCCGCTG CTCTTCCTTC CGGCTTCGGTCGCGCTGGCGCCGC TTTTCCTTCTGCAGT TERM 2000 2116746 - 2116800 + g 72 -12 -3.2891 | gap 1, opp_overlap 2116746, overlap 2116745 AATCGGATCTGGAAA CGGCGCCGGCG-GCCCGCCGCTG CTCTTCCTTC CGGCTTCGGTCGCGCTGGCGCCG CTTTTCCTTCTGCAG TERM 2001 2116951 - 2116936 - G 71 -4.6 -4.4009 | GGTCAGGGGAGAAAA GCGCAC TTTC GTCCGC TCATAGATGATCTCC TERM 2002 2117383 - 2117393 + H 80 -5.4 -4.87273 | GCGGAAGTCGAGGGG GTGA TGT TCAC TTTTTGTGCGCTGTT TERM 2003 2118291 - 2118273 - g 76 -10.2 -3.90291 | opp_overlap 2118272 ATGCCTTGAACGAAA CCGTGACG CTG CGTCCCGG CTTGCTGCGGCTCAC cyaH 2117600 - 2119006 + | adenylate/guanylate cyclase protein TERM 2004 2120089 - 2120046 - g 75 -11.8 -3.60098 | gap 1 ACGGCGCATTCCAAA CGGGCGGCCGTAGAGCAGG CCGATAT CCTGGT-TACGACCACCCG CGGGAAAGGATCGGT TERM 2005 2120361 - 2120345 - g 81 -7.3 -4.52589 | opp_overlap 2120345, overlap 2120331 GCCGGGCAGAGAAAA TGATGAC GAG GTCACCA TTTTCGACTCCACGG ocdch2 2119476 - 2120471 + | ornithine cyclodeaminase protein TERM 2006 2120732 - 2120709 - g 74 -6 -4.42491 | gap 1 GAAAAAATAGAGAAA GAGGTTG-GCT GCC AGCTCTACCTC AAGCCTGAGACGCTG RHE_CH02027 2120607 - 2121581 + | threonine dehydratase protein TERM 2007 2121698 - 2121679 - T 86 -10.6 -4.25104 | TTGTCGTTATCAAAA GCTGGGGC GTCA GCCCCGGC ATTCCCGTTTAGGCC RHE_CH02028 2123497 - 2121707 - | saccharide ABC transporter, ATP-binding protein TERM 2008 2123299 - 2123285 - G 79 -8.5 -4.36554 | GACGACGACAACAAA GGCGC TGAGC GCGCC GTCAGCCGCATTGCC RHE_CH02029 2124321 - 2123785 - | hypothetical protein TERM 2009 2124581 - 2124594 + G 81 -2.3 -5.15167 | overlap 2124578 2124582 TACTATGTCGGAAGC TCGGT TCGA GCCGG TTTTTCTTCATCGTC RHE_CH02030 2124570 - 2124851 + | hypothetical protein TERM 2010 2124994 - 2125017 + T 70 -9.5 -3.53444 | TTTCACCGGATCTAT GCGCGTCGC CCGATC GCGACACGC TTTAGCCAAGGCTGG RHE_CH02031 2125846 - 2125019 - | putative gualylate cyclase protein RHE_CH02032 2126258 - 2126515 + | hypothetical protein TERM 2011 2126493 - 2126538 + F 70 -5.4 -4.4017 | opp_overlap 2126504 AGGAGGCGGGCATCG CCGTCATAGAAGC-CGCCGACT GACC AG-CGGCGCGCATCTGTTCCGG TTTTCTCGCCGTTCC TERM 2012 2126751 - 2126734 - g 80 -4.8 -4.82901 | overlap 2126745 CGCCTGGCAGAAAAA GGTCGA ACTCAG CCGACC GCTGCCGCCTCTGCC RHE_CH02033 2126599 - 2127051 + | hypothetical protein RHE_CH02034 2128603 - 2127089 - | hypothetical protein TERM 2013 2127428 - 2127458 + g 73 -8.9 -4.07568 | gap 1, opp_overlap 2127378 2127439, overlap 2127415 GTCCGGCGCGCGGTC GCCGGCAAGCACGC TGCC GCG-GCGTTCCGGC TTTTCCAGCGCAAGC TERM 2014 2127633 - 2127652 + g 70 -10.6 -3.65199 | opp_overlap 2127629 AGCGCATCACAGGCC CCGGCGGC GACC GCCGCCAG TTTCCATCCAAGATT TERM 2015 2128452 - 2128491 + g 71 -4.9 -4.42386 | gap 1, overlap 2128469 TCCTGCGTACGCGGC TGAATG-CCCTTGCCGCG CGAAC CGCGGAACGGGTCGTCCA TTTTCTCGATCAGAC TERM 2016 2128679 - 2128665 - g 91 -2.8 -5.46657 | overlap 2128666 GACGTCAAGAAAAAA CGTGCA AAA TACACA TATGTCGGAAAAGCT RHE_CH02035 2128648 - 2129160 + | MarR family transcriptional regulator RHE_CH02036 2129856 - 2129308 - | hypothetical protein TERM 2017 2129659 - 2129698 + g 73 -11.4 -3.63569 | opp_overlap 2129649 2129648, overlap 2129663 2129688 ATAAGGGCTGCCTGT GCCGGCCGTCCAGGCT TCGAAGCC AGCCTCGACGGCTGCC TTGTTGCGGCGTTCG RHE_CH02037 2130740 - 2129937 - | short chain dehydrogenase RHE_CH02038 2131192 - 2130794 - | hypothetical protein TERM 2018 2131332 - 2131303 - R 70 -9.9 -3.53012 | TGCGCTTTGTGCAAA TCTTGCGCTCCGG CGTG CCGGCACGCACGA ACGGCGAACTATCTC RHE_CH02039 2132251 - 2131364 - | AraC family transcriptional regulator TERM 2019 2131634 - 2131677 + g 100 -11.8 -4.65895 | gap 1 ATCCAGCGAGATTTC GGCTGCGATGCGGGCTTCAAT GAA ATCGAAGAC-GCGTTGCAGCC TTTTTGGGTCGACAG RHE_CH02040 2133143 - 2132754 - | putative translation initiation inhibitor protein RHE_CH02041 2133725 - 2133144 - | NAD(P)H dehydrogenase protein TERM 2020 2133333 - 2133321 - G 70 -10.5 -3.57561 | opp_overlap 2133321 2133323 GGCGAAGGCGCGAAA CGGCG TGG CGCCG TATGTCAGAACGGCG RHE_CH02042 2135131 - 2133725 - | putative FAD linked oxidase protein TERM 2021 2135056 - 2135075 + g 76 -11.4 -3.68988 | opp_overlap 2135036 AGAAATCGCGGCTCT TCTGGCGC ACTA GCGCCGGA TTGTCTTCAATGGCG codAch2 2136446 - 2135133 - | cytosine deaminase TERM 2022 2135266 - 2135238 - G 91 -9.5 -4.44046 | overlap 2135240 CGGACGGGAAAGAAA TTCGCTCCAGCGC CGA GCGCTGAAGAGCA CCAGATCGGCCGAGG TERM 2023 2136063 - 2136084 + g 70 -10.1 -3.65046 | ATGCGCGTAGGCGCA GCGCAGGGA AAAC TCCATGCGC TTCTTCACGTCGCCA RHE_CH02044 2137288 - 2136446 - | nitrate/sulfonate/bicarbonate ABC transporter permease TERM 2024 2137223 - 2137273 + g 88 -8.3 -4.75372 | gap 1, opp_overlap 2137258, overlap 2137202 2137200 2137225 2137265 GACGCGCAGCGCCAG TTCGCGGCGCCGGGCGCTTG CAGTCGTTTGGA CAAGCAGC-GGCGCCGCGGA TTTTTCGTCACTCAT RHE_CH02045 2138112 - 2137285 - | nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein RHE_CH02046 2139195 - 2138179 - | nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein TERM 2025 2139220 - 2139242 + H 86 -9 -4.71426 | overlap 2139221 TCCCCTTCTGAGTTC GCGGCCGTCG CGG CGACGTCCGA TTTTCTTCATAGGAG TERM 2026 2139221 - 2139241 + H 79 -12.5 -3.42374 | overlap 2139220 CCCCTTCTGAGTTCG CGGCCGTCG CGG CGACGTCCG ATTTTCTTCATAGGA RHE_CH02047 2139378 - 2140328 + | LysR family transcriptional regulator RHE_CH02048 2141144 - 2140347 - | creatininase (creatinine amidohydrolase) protein TERM 2027 2141310 - 2141335 + H 77 -7.6 -4.38154 | opp_overlap 2141310 CATGTCTTGCCGAAA CCATTGCGCA AGTGCG TCCGCAATGG TTTTCTACGGCCTCT RHE_CH02049 2141380 - 2141859 + | hypothetical protein TERM 2028 2141912 - 2141868 - T 79 -7.8 -4.65895 | gap 1 TCGCTGAGCCAAAAA GCCA-TCCCCAACCCCTCCCC ACAA GGGGAGGGACTAAGCTGTGGC GTCCGACGGCGACCC TERM 2029 2142098 - 2142068 - T 71 -11.7 -3.1352 | opp_overlap 2142066 2142094, overlap 2142066 2142071 CGCGAATTGAACAGA CTACCGCGCCGCC CAGTT GGCGCCGCGGCGG AAGATCGTCTTCATC TERM 2030 2142095 - 2142071 - T 79 -14.2 -2.77036 | opp_overlap 2142066 2142094, overlap 2142068 2142066 GAATTGAACAGACTA CCGCGCCGCC CAGTT GGCGCCGCGG CGGAAGATCGTCTTC RHE_CH02050 2142709 - 2142068 - | hypothetical protein RHE_CH02051 2143828 - 2142728 - | oxidoreductase protein RHE_CH02052 2145062 - 2143863 - | ROK family transcriptional regulator TERM 2031 2145527 - 2145543 + G 77 -4.3 -4.87389 | CCGACATTGCTGCAG TCCGACG ACG TGCCGGA TTTCTTTTTCAGCTG TERM 2032 2145857 - 2145826 - g 71 -10.8 -3.46509 | gap 1, overlap 2145827 GGTGAAGAAGATCAA GGCGGCCGGC-ATCG TGC CGATTGCCGGCGGCG GCGGCGAGAAATGGC TERM 2033 2145856 - 2145827 - g 74 -14.3 -2.67423 | gap 1, overlap 2145826 GTGAAGAAGATCAAG GCGGCCGGC-ATCG TGC CGATTGCCGGCGGC GGCGGCGAGAAATGG TERM 2034 2146148 - 2146135 - g 93 -8.1 -5.12617 | overlap 2146137 CAATCAGCGAAAAAA TGCCG GCGA CGGCA AGGGCCTCTCCCCGG RHE_CH02053 2145263 - 2146567 + | sugar ABC transporter, substrate-binding protein RHE_CH02054 2146649 - 2147587 + | sugar ABC transporter, permease protein RHE_CH02055 2147580 - 2148428 + | sugar ABC transporter, permease protein TERM 2035 2149247 - 2149201 - g 81 -10.1 -4.11216 | gap 2 TGTCGACGGTGAAAA CGGTGCG-CCCGCCGC-CCGCCT CGA AGACGGCACGGCGATTCGCATCG CACCCGACCGCAGGG RHE_CH02056 2148452 - 2149525 + | sugar ABC transporter, ATP-binding protein TERM 2036 2149686 - 2149666 - T 74 -12.6 -2.8655 | TCGATGCACAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGTCGAGAGTGA RHE_CH02057 2150706 - 2149780 - | 5-dehydro-4-deoxyglucarate dehydratase TERM 2037 2150670 - 2150680 + g 72 -2.4 -4.75174 | opp_overlap 2150661 2150656 2150664 ACGAGAGCAGGCCAC TGCC GAC GGCC TTTTTCAATTCGATC uxuAch 2151713 - 2150739 - | mannonate dehydratase protein RHE_CH02059 2152489 - 2151779 - | GntR family transcriptional regulator dppAch2 2152621 - 2154216 + | dipeptide ABC transporter, substrate-binding protein dppBch2 2154237 - 2155265 + | dipeptide ABC transporter, permease protein dppCch2 2155262 - 2156164 + | dipeptide ABC transporter, permease protein dppDch2 2156151 - 2156996 + | dipeptide ABC transporter, ATP-binding protein dppFch2 2156993 - 2157736 + | dipeptide ABC transporter, ATP-binding protein RHE_CH02065 2158262 - 2157723 - | putative oxidoreductase protein RHE_CH02066 2159314 - 2158259 - | LacI family transcription regulator TERM 2038 2159273 - 2159293 + g 85 -3.2 -5.31275 | gap 1, overlap 2159276 2159278 GCGGGCGGCGATATC GTCGAGGCG CGTG CGCCT-GCC TTTTTTCTGCTCCGC RHE_CH02067 2159504 - 2162026 + | hypothetical protein TERM 2039 2162064 - 2162031 - f 78 -14.6 -2.62184 | gap 1 CGGCCTCGTAGACGA CGCGCCCGG-CAGGT GGAGG ACCCGGCCGGGCGCA GGAATTCAGCGGTCA RHE_CH02068 2162093 - 2163352 + | sugar ABC transporter, substrate-binding protein TERM 2040 2163410 - 2163437 + F 70 -10.6 -3.27653 | gap 1, opp_overlap 2163403 2163402, overlap 2163409 2163413 CGGCAAAGGCCGGTG TGCGGCAGGCGCT TCT GGCGCCTGTC-CA TCTTGTCATGGGGCT TERM 2041 2163950 - 2163972 + G 81 -4.1 -5.07486 | TCGAGCCCTTCTCCT GGCTCAG CGATCGGTT CTGGGCC TTTTTCTTCGCCGTC RHE_CH02069 2163466 - 2164401 + | sugar ABC transporter, permease protein TERM 2042 2164396 - 2164386 - f 71 -8.2 -3.8917 | overlap 2164393 CCGCAACGAGAAGAA GGCG AAA CGCC AATGAGCGCCGTCAC RHE_CH02070 2164398 - 2165447 + | sugar ABC transporter, permease protein RHE_CH02071 2165466 - 2166545 + | sugar ABC transporter, ATP-binding protein TERM 2043 2166582 - 2166557 - T 100 -14.7 -4.64766 | TTGAGAGCCGAAAAA GCCCGCGCC GGAATGGA GGCGCGGGC CAGAATTTTCACATC RHE_CH02072 2166855 - 2166607 - | hypothetical protein TERM 2044 2166857 - 2166867 + H 74 -6.8 -4.51363 | overlap 2166850 CCTCGCTCCGGCACG TGCG TTC CGCA TTTTAATATTTCGTG TERM 2045 2167515 - 2167526 + G 83 -7.2 -4.56597 | overlap 2167512 2167511 CTTCTTCGCCGTCTG GCCG CGCC CGGC TTTTTCCCACACCGG RHE_CH02073 2167153 - 2167752 + | hypothetical protein TERM 2046 2167978 - 2167940 - g 70 -13 -2.90723 | opp_overlap 2167940, overlap 2167923 2167951 TGAGCGGCAACGAGA CCGGCGCAAGAGCCGGCA CGA CGCCCGATCTCGCGGCGG TTCTTGCCGCATCGG TERM 2047 2167940 - 2167978 + G 70 -10.1 -3.62597 | opp_overlap 2167923 2167940 2167951 TGAGCGGCAACGAGA CCGGCGCAAGAGCCGGC ACGAC GCCCGATCTCGCGGCGG TTCTTGCCGCATCGG TERM 2048 2168062 - 2168072 + G 76 -8.2 -4.14627 | overlap 2168058 CTCATCGTTGCCGCC GCGG CCG CCGC TTATTTCTATGCCGG RHE_CH02074 2167912 - 2169204 + | HlyD family protein secretion protein RHE_CH02075 2169218 - 2169934 + | putative ABC transporter, ATP-binding protein RHE_CH02076 2169924 - 2171126 + | putative ABC transporter, permease protein TERM 2049 2171781 - 2171796 + G 100 -11.8 -4.41348 | opp_overlap 2171772 AGGAATGCGCGGTGA CCGGCG ATCT CGCCGG TTTCTTTGCCGCCGA RHE_CH02077 2171429 - 2172043 + | GntR family transcriptional regulator TERM 2050 2172066 - 2172047 - T 93 -12.8 -4.32857 | opp_overlap 2172047 GTCGCCAAATAGAAA CGGCCCCG TTTC CGGAGCCG TTATCAGATATGCCT TERM 2051 2172047 - 2172066 + T 70 -10.6 -3.3514 | opp_overlap 2172047 GTCGCCAAATAGAAA CGGCCCCG TTTC CGGAGCCG TTATCAGATATGCCT fpr 2172904 - 2172092 - | ferredoxin-NADP+ reductase protein TERM 2052 2173229 - 2173212 - H 74 -6.9 -4.40561 | GGTGGCGAAAAAGAA CGCTTGC CGGG GCGAGCG CGATAGGGCGGTCGG pcs 2173250 - 2173978 + | phosphatidylcholine synthase protein TERM 2053 2174489 - 2174477 - g 70 -10.5 -3.60792 | CGGCCAATGGGCAAA GGCGC TCG GCGCC ACCGTCATCGGCACG qor 2173989 - 2174969 + | quinone oxidoreductase protein TERM 2054 2175946 - 2175969 + G 74 -13.2 -3.28712 | opp_overlap 2175944, overlap 2175934 TCTCCGGCGAATATC CGGTCGCTTC GGCC GAAGCGATCG TTATCCGGAAGAAGC TERM 2055 2176009 - 2176031 + G 70 -11.9 -3.14132 | opp_overlap 2176006, overlap 2176022 CCGAGGGGATAACGG CCCGCCGCC TGCTC GGCGCCGGG TTCGTGCCGGAAGAG RHE_CH02081 2175009 - 2176577 + | sugar ABC transporter, ATP-binding protein TERM 2056 2177160 - 2177172 + G 70 -10.5 -3.67622 | GGAGGAATCCGGCCG GGCCC ACT GGGCC TTCATTTTCGCCATC TERM 2057 2177559 - 2177571 + G 72 -2.6 -4.79223 | CACCCGCGTCTTCCA GGGC CTGCT GCTC TTTTTCGTGCTCTCC RHE_CH02082 2176567 - 2177652 + | sugar ABC transporter, permease protein TERM 2058 2177784 - 2177794 + G 73 -8.2 -4.07568 | ATGATGATCATGGGC GCGG TTG CCGC TTTTGCCGGAGCGCA RHE_CH02083 2177649 - 2178569 + | sugar ABC transporter, permease protein RHE_CH02084 2178622 - 2179698 + | putative ABC transporter, substrate-binding protein TERM 2059 2179726 - 2179746 + F 100 -16.1 -5.55769 | opp_overlap 2179725 TTTTGCCGATACGAG GGGCGCTCC TTG GGGGCGCCC TTTTTTCTTCTCACA TERM 2060 2179910 - 2179930 + G 72 -11.8 -3.30243 | TTCGGTTCGGCTTCG GCCGGCGG CTTGA CCGTCGGC TTCTCGCAGATCGGT RHE_CH02085 2179844 - 2180806 + | sugar ABC transporter, substrate-binding protein TERM 2061 2182127 - 2182117 - g 76 -8.2 -4.11692 | opp_overlap 2182117 CACCGACCGTGAAAA GCCG ATC CGGC TGCTCTCCGGCGGCA RHE_CH02086 2180927 - 2182450 + | sugar ABC transporter, ATP-binding protein RHE_CH02087 2182447 - 2183451 + | sugar ABC transporter, permease protein TERM 2062 2183926 - 2183970 + G 91 -9.3 -4.57073 | TCTACTGGCGGCTGC CCGGAGGCG-GACGGCTGACG CTGAT CGGC-GCCGTCATGCTTCTGG TTTTTGCCGCCGGTA RHE_CH02088 2183457 - 2184425 + | inner membrane ABC transporter permease protein YjfF RHE_CH02089 2184503 - 2185216 + | GntR family transcriptional regulator TERM 2063 2185216 - 2185244 + F 70 -10.4 -3.34962 | opp_overlap 2185217 2185225, overlap 2185217 TTCGCCCGCGATCTA ATCCTGAAATCG ATTTC CGATTTCAGGAA TTATGCAGTATGAGG TERM 2064 2185217 - 2185243 + F 75 -13.9 -2.60763 | opp_overlap 2185217 2185225, overlap 2185216 TCGCCCGCGATCTAA TCCTGAAATCG ATTTC CGATTTCAGGA ATTATGCAGTATGAG TERM 2065 2185243 - 2185217 - f 81 -14.6 -3.05384 | opp_overlap 2185216 2185217, overlap 2185225 TCGCCCGCGATCTAA TCCTGAAATCGA TTT CCGATTTCAGGA ATTATGCAGTATGAG glmU 2185300 - 2186661 + | UDP-N-acetylglucosamine pyrophosphorylase protein glmS1 2186771 - 2188597 + | D-fructose-6-phosphate amidotransferase TERM 2066 2189137 - 2189161 + G 73 -6.4 -4.25104 | gap 1 GGACTGATCGAATAT CCAG-GTCCGG GCCT CTGGGCGCTGG TTTTCGTCGCCACCG RHE_CH02092 2188732 - 2189439 + | hypothetical protein recG 2191541 - 2189436 - | ATP-dependent DNA helicase protein TERM 2067 2189897 - 2189922 + g 72 -4 -4.58395 | gap 1 CCTCGACGACAGTGG TGGCGACGAGC AGCCG GGTC-TCGCCA TTTTTGAACGCTACC TERM 2068 2190162 - 2190185 + g 83 -7.4 -4.67011 | gap 1 CGGCACCGTGATTGT CTGGATCGGCT TGC GGCCGA-CCGG TTTTTCCGTGAGCTT TERM 2069 2190324 - 2190357 + g 76 -12.5 -3.4252 | gap 1, opp_overlap 2190328 2190344, overlap 2190314 2190334 CTGATGCACGCCGAA GC-GATGCTGTTCGTC AAC GACGGCCAGCATCAGC TTGTCGTACGTGACG RHE_CH02094 2191556 - 2191939 + | hypothetical protein TERM 2070 2195398 - 2195386 - g 76 -6.2 -4.64766 | CCGACACCGGAAAAA CGCC TGCAG GGCG CTGCCGTGATCATGA mfd 2191936 - 2195439 + | transcription-repair coupling factor (TRCF) protein RHE_CH02096 2195456 - 2195923 + | putative redox protein RHE_CH02097 2196495 - 2196079 - | hypothetical protein RHE_CH02098 2197175 - 2196504 - | putative dithiol-disulfide isomerase protein (involved in polyketide biosynthesis) TERM 2071 2197212 - 2197233 + r 87 -10.1 -4.64334 | opp_overlap 2197213, overlap 2197213 CTCTGGAAGAGACAT AGGGCCGAA GTGT TTCGGCCCC TTTTATTGGGCGCTT TERM 2072 2197213 - 2197232 + r 82 -13.6 -3.37877 | opp_overlap 2197213, overlap 2197212 TCTGGAAGAGACATA GGGCCGAA GTGT TTCGGCCC CTTTTATTGGGCGCT TERM 2073 2197232 - 2197213 - R 78 -13.6 -3.10493 | opp_overlap 2197212 2197213 TCTGGAAGAGACATA GGGCCGAA GTGT TTCGGCCC CTTTTATTGGGCGCT RHE_CH02099 2199038 - 2197236 - | peptide ABC transporter, substrate-binding protein RHE_CH02100 2199326 - 2199979 + | putative signal peptide protein TERM 2074 2200028 - 2200000 - T 74 -11.8 -3.12327 | opp_overlap 2200006, overlap 2200006 CCGCCATATTGAATA GAAAAACCCGGC TTCAG GCCGGGTTTTTT GTTGATAGGCCTTTC TERM 2075 2200022 - 2200006 - T 100 -10.8 -5.10767 | opp_overlap 2200006, overlap 2200000 TATTGAATAGAAAAA CCCGGC TTCAG GCCGGG TTTTTTGTTGATAGG TERM 2076 2200006 - 2200022 + T 100 -11.5 -5.5112 | opp_overlap 2200000 2200006 TATTGAATAGAAAAA CCCGGCT TCA GGCCGGG TTTTTTGTTGATAGG TERM 2077 2200183 - 2200207 + T 80 -11.4 -3.83844 | opp_overlap 2200183 TGTGCCAAAAGAAAA GGCCTCGCTT GGGAG GGGCGAGGCC TTGTTCATTGATCGG TERM 2078 2200207 - 2200183 - T 100 -10 -5.07652 | opp_overlap 2200183 TGTGCCAAAAGAAAA GGCCTCGC TTGGGAGGG GCGAGGCC TTGTTCATTGATCGG RHE_CH02101 2200561 - 2200232 - | hypothetical protein TERM 2079 2200679 - 2200706 + r 78 -14.2 -2.57344 | opp_overlap 2200684, overlap 2200684 CATGACCGGGGGAGG TGAAAGTCCCGG CGAA CCGGGACTTTCC GTTATGAGGCCAATC TERM 2080 2200684 - 2200701 + r 85 -12.7 -3.80625 | opp_overlap 2200684, overlap 2200679 CCGGGGGAGGTGAAA GTCCCGG CGAA CCGGGAC TTTCCGTTATGAGGC TERM 2081 2200701 - 2200684 - R 81 -12.7 -3.59979 | opp_overlap 2200684 2200679 CCGGGGGAGGTGAAA GTCCCGG CGAA CCGGGAC TTTCCGTTATGAGGC glnA2 2202129 - 2200720 - | glutamine synthetase protein glnB 2202546 - 2202208 - | nitrogen regulatory protein P-II TERM 2082 2202526 - 2202538 + g 86 -7.7 -4.72272 | CTTGAAGGGCTTAAT GATCG CTT CGATC TTTTTCATGAGAAAA TERM 2083 2202774 - 2202760 - H 72 -2.1 -4.87318 | gap 1, opp_overlap 2202752 2202770, overlap 2202752 2202761 2202762 CCGAAAACTGAAAAA GTCAGG TTTC CCTG-C GATTGCAAAAGCAGG TERM 2084 2203124 - 2203136 + G 78 -4.7 -4.8048 | CTGTTGGAGAGCGGA GCGAC CGT GGCGC TTTTTCATCTCGGCG RHE_CH02104 2202932 - 2204362 + | hypothetical protein RHE_CH02105 2205174 - 2204368 - | hypothetical protein RHE_CH02106 2205654 - 2205199 - | acetyltransferase protein uvrA 2208578 - 2205657 - | excinuclease ABC subunit A TERM 2085 2209349 - 2209372 + G 71 -11 -3.40403 | GGCGGCAACTTCTCG CGGGATCTCG ACGA CGATATCCCG TTCTGATCGGCCGCC ssb 2208863 - 2209378 + | single-strand DNA-binding protein TERM 2086 2209409 - 2209443 + T 89 -11.6 -4.31397 | gap 1, opp_overlap 2209416, overlap 2209407 2209411 GCTTGAAGAAGATCC G-AGAGCATGATGCC TTTGGC GGCGTCATGCTCTTC TTGTTTTCTCACGCT TERM 2087 2209411 - 2209440 + T 100 -14.4 -4.26938 | opp_overlap 2209416, overlap 2209409 2209407 TTGAAGAAGATCCGA GAGCATGATGCC TTTGGC GGCGTCATGCTC TTCTTGTTTTCTCAC RHE_CH02109 2210108 - 2209461 - | multiple antibiotic resistance transporter protein TERM 2088 2210198 - 2210183 - H 78 -11.8 -3.51708 | opp_overlap 2210183 2210182, overlap 2210180 2210179 GATTTGGCAAATGAA CCGCGG CGGT CCGCGG CGGATTTGCCCTGCC TERM 2089 2212475 - 2212491 + G 72 -4.3 -4.56597 | GTGCATCCGGTTCTC CGTCGAC GAC GTCCGCG TTTTTGCCGGCCGCA gyrA 2210346 - 2213171 + | DNA gyrase subunit A TERM 2090 2213183 - 2213201 + T 100 -16 -4.66537 | opp_overlap 2213180 2213177 ATGATCGAATGAGCG GGGCGGCT TCC AGCCGCCC TTTTCTGTTAGAGCC TERM 2091 2213289 - 2213268 - T 100 -13.7 -5.4833 | opp_overlap 2213268 CTACCCAAGAAAAAA GCCGGACGC TGCT GCATCCGGC TTTGAAAGGTCCAGG TERM 2092 2213268 - 2213289 + T 77 -11.5 -3.55444 | opp_overlap 2213268 CTACCCAAGAAAAAA GCCGGACGC TGCT GCATCCGGC TTTGAAAGGTCCAGG RHE_CH02111 2213476 - 2213336 - | hypothetical protein RHE_CH02112 2214160 - 2213756 - | hypothetical protein coaD 2214193 - 2214687 + | phosphopantetheine adenylyltransferase ppiA 2214714 - 2215286 + | peptidyl prolyl cis-trans isomerase A signal peptide protein ppiB 2215315 - 2215824 + | peptidyl prolyl cis-trans isomerase B signal peptide protein TERM 2093 2215836 - 2215877 + F 100 -19.6 -3.65351 | gap 2, opp_overlap 2215843, overlap 2215838 2215843 CTGATTGTGATTTCT GCTGAAACCCGCCCTTGCGC GAAA GCGC-GGGGCGGGTTTC-GC TTTGCCTGAAAGTAC TERM 2094 2215838 - 2215876 + F 95 -19.7 -2.78996 | gap 1, opp_overlap 2215843, overlap 2215836 2215843 GATTGTGATTTCTGC TGAAACCCGCCCTTGCGC GAAA GCGC-GGGGCGGGTTTCG CTTTGCCTGAAAGTA TERM 2095 2215871 - 2215843 - f 82 -13.8 -3.53444 | gap 1, opp_overlap 2215838 2215836 2215843 TGATTTCTGCTGAAA CCCGCCCTTGCGC GAAA GCGCG-GGGCGGG TTTCGCTTTGCCTGA TERM 2096 2215843 - 2215871 + F 100 -16 -3.85909 | gap 1, opp_overlap 2215843, overlap 2215838 2215836 TGATTTCTGCTGAAA CCCGCCCTTGCGC GAAA GCGC-GGGGCGGG TTTCGCTTTGCCTGA TERM 2097 2215974 - 2215936 - g 70 -11.7 -3.14344 | opp_overlap 2215956 GACCTGCCGGATGAA CGCATTG-CGCTGCGGCCC GCC GAGCCGC-GCGACAGCGCG CGCCTGCTCGTTGTT queA 2215897 - 2216982 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 2098 2217065 - 2217011 - g 70 -10.5 -3.63694 | gap 1, opp_overlap 2217047, overlap 2217013 2217062 ATTCACCCTGAAGAA GACGGATGCCGGCGCGCGCCTCGGCG AAAT CTCCATGCCGCGCGGCGAAATCCG-C ACGCCCGCCTTCATG TERM 2099 2217064 - 2217013 - g 83 -14.2 -3.39784 | opp_overlap 2217047, overlap 2217011 2217062 TCACCCTGAAGAAGA CGGATGCCGGCGCGCGCCTCGGCG AAAT CTCCATGCCGCGCGGCGAAATCCG CACGCCCGCCTTCAT tgt 2216979 - 2218109 + | queuine tRNA-ribosyltransferase RHE_CH02118 2219122 - 2218112 - | putative acetyltransferase protein TERM 2100 2219183 - 2219205 + r 88 -7.7 -5.14563 | opp_overlap 2219183 CTTGCCAGTATTCAA CCTGCCAAT CCTCC GTTGGCGGG TTTTTTACTCCAGCA RHE_CH02119 2219718 - 2219290 - | hypothetical protein fabF2 2221064 - 2219799 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2101 2220678 - 2220633 - G 73 -12.5 -3.21416 | gap 1, overlap 2220634 2220636 GAGGTTGACGAGGAA GGAGG-GCACGGTGAAGGGCGA CAG TCGCCGCACACCGCGCGCCTCA CCGATCCGCACCGCT TERM 2102 2220677 - 2220634 - G 79 -16 -2.52635 | gap 1, overlap 2220633 2220636 AGGTTGACGAGGAAG GAGG-GCACGGTGAAGGGCGA CAG TCGCCGCACACCGCGCGCCTC ACCGATCCGCACCGC TERM 2103 2221135 - 2221099 - R 76 -13.6 -2.88544 | overlap 2221102 GTCGATGCCGAGATA CCAGGCGCGCATGCGG GCGAT CCGCGCGCGCACCTCG TCATCGGCTGCAGGG TERM 2104 2221132 - 2221102 - R 75 -13.9 -2.69468 | overlap 2221099 GATGCCGAGATACCA GGCGCGCATGCGG GCGAT CCGCGCGCGCACC TCGTCATCGGCTGCA RHE_CH02121 2221617 - 2221078 - | transcriptional regulator protein TERM 2105 2221439 - 2221451 + g 71 -4.7 -4.43189 | overlap 2221433 2221432 GTCAGGATGTTCGGC GCCAC GCT GAGGC TTTTCTGGAATTCAT TERM 2106 2221653 - 2221665 + r 71 -4.7 -4.56597 | opp_overlap 2221639, overlap 2221653 2221652 AGCTGACTGCCGTCA GCGAG GAT CGCGC TTTTTGCGACCGCGG RHE_CH02122 2222183 - 2221650 - | MutT/NUDIX family hydrolase RHE_CH02123 2223132 - 2222323 - | inositol monophosphatase protein afuC1 2224224 - 2223163 - | iron(III) ABC transporter, ATP-binding protein TERM 2107 2223563 - 2223526 - G 91 -18.4 -3.16055 | GAAATCGGCGATGAA GGACGACGCGGGCGCT TCATAG AGCTCCCGCGGCGTCC CGGACTGGGCGATCT afuB1 2226452 - 2224221 - | iron(III) ABC transporter, permease protein TERM 2108 2226536 - 2226484 - R 71 -9 -3.73775 | gap 1, opp_overlap 2226482 2226484, overlap 2226492 2226493 TTCACGTTGATGAAA TGGGAGAATGGAGCGGCA-CCCGGA TCCC TCCGGGATGCCGCGCCGCTCATCGA TCTTCAGTTGGCAAC TERM 2109 2226484 - 2226536 + r 71 -11.2 -3.14878 | gap 1, opp_overlap 2226484 2226492 2226493, overlap 2226482 TTCACGTTGATGAAA TGGGAGAATGGAGCGGCA-CCCGGA TCCC TCCGGGATGCCGCGCCGCTCATCGA TCTTCAGTTGGCAAC TERM 2110 2226528 - 2226492 - R 85 -14.4 -3.40382 | gap 1, opp_overlap 2226484 2226482, overlap 2226484 2226493 GATGAAATGGGAGAA TGGAGCGGCA-CCCGGA TCCC TCCGGGATGCCGCGCCG CTCATCGATCTTCAG TERM 2111 2226527 - 2226493 - R 86 -17.9 -2.63747 | gap 1, opp_overlap 2226484 2226482, overlap 2226492 2226484 ATGAAATGGGAGAAT GGAGCGGCA-CCCGGA TCCC TCCGGGATGCCGCGCC GCTCATCGATCTTCA afuA1 2227565 - 2226540 - | iron(III) ABC transporter, substrate-binding protein afuA2 2228676 - 2227684 - | iron(III) ABC transporter, substrate-binding protein TERM 2112 2227806 - 2227818 + g 70 -10.5 -3.66178 | TGTCGGGCGCAGCTG GCGGC AAA GCCGC TTTGGCGTTCGACGG drrA 2229059 - 2229652 + | two-component response regulator protein RHE_CH02129 2230000 - 2231751 + | two-component sensor histidine kinase protein RHE_CH02130 2232134 - 2231748 - | hypothetical protein TERM 2113 2232132 - 2232121 - G 70 -7.2 -4.10161 | overlap 2232111 2232122 GAGGAGCCTGGAAAA GCGC GTTC GCGC AATATCCCGTCCCCT RHE_CH02131 2232607 - 2232290 - | hypothetical protein TERM 2114 2232669 - 2232651 - H 71 -11.7 -3.21218 | opp_overlap 2232653 ACGGCGCAGCATCAA CACGCGG AAAGG CCGCGTG GTTCCGATTACAGAA RHE_CH02132 2232832 - 2233227 + | hypothetical protein RHE_CH02133 2234077 - 2233397 - | GNAT family acetyltransferase RHE_CH02134 2234595 - 2234074 - | MarR family transcriptional regulator TERM 2115 2234432 - 2234412 - G 76 -13.3 -3.53444 | opp_overlap 2234417 CCACCGCCTGCGAAA GCTCGCCGA CCG TCAGCGAGC CGGCTCGGTCGATTG RHE_CH02135 2235798 - 2234692 - | putative transporter, permease protein RHE_CH02136 2235967 - 2237475 + | adenylate cyclase RHE_CH02137 2238194 - 2237514 - | hypothetical protein RHE_CH02138 2241509 - 2238264 - | putative adenylate/guanylate cyclase protein TERM 2116 2240011 - 2239992 - G 78 -2.8 -5.00884 | gap 1, overlap 2239994 ACCCTCGCCAAAAAA GGCGGCAAG CAG CTT-CTGCC CATCGGCAGCGAGGA TERM 2117 2240774 - 2240802 + g 72 -13.9 -2.71712 | overlap 2240773 CGAGCACGTTTCCAC TCTTGCCGCGCAA AGC TTGCGCGCCGAGA CTTTCGAAGGCAAAG occPch 2242478 - 2241675 - | octopine ABC transporter, ATP-binding protein TERM 2118 2242258 - 2242273 + g 70 -10.4 -3.57615 | CCGCCGATGCGAATT TCCCCG CTGT CGGGGA TTTCGAGCATATTGA occMch 2243189 - 2242491 - | octopine ABC transporter, permease protein occQch 2243914 - 2243189 - | octopine ABC transporter, permease protein RHE_CH02142 2244675 - 2243950 - | transcriptional regulator protein speB2 2244890 - 2245873 + | agmatinase protein TERM 2119 2246346 - 2246316 - g 76 -7.5 -4.37886 | gap 1 TCATGGTCGAGAAAA CCGGTCCTCTTGCA GATC TGCCGG-GGACCGG GACGACAGTCGACCT occT 2245949 - 2246791 + | octopine ABC transporter, substrate-binding protein TERM 2120 2246843 - 2246866 + F 75 -11.6 -3.53811 | opp_overlap 2246820 CGGCGCACCGAGTAG GTCGCGCCGG CTGA CCGGCGCAGC TTTACCGCGCGTCGC RHE_CH02145 2246914 - 2248296 + | aminotransferase TERM 2121 2248451 - 2248419 - g 73 -11.1 -3.5944 | ATCGAGATCCTGAAA GCCGGCGGCAAGGCC ATC GACGCCGCCGTCGGC GCCTGTGCCGTCCAA TERM 2122 2249336 - 2249370 + G 74 -10 -3.80625 | opp_overlap 2249317 CGATGCCGGGGCCGT TGTCGACGGCGTCG AGCATGC CGACACCGTCTACA TTTCGGTTGTCGACA TERM 2123 2249502 - 2249488 - g 71 -8.6 -3.88137 | ACAATCGCGGACAAA GCTTCA GTT TGAAGC AGGGGCATCCGAACG ggt1 2248314 - 2249906 + | gamma-glutamyltranspeptidase protein RHE_CH02147 2249924 - 2251357 + | putative aldehyde dehydrogenase protein RHE_CH02148 2253624 - 2251363 - | putative sensory box/GGDEF family protein TERM 2124 2252179 - 2252202 + g 79 -9.4 -4.18934 | opp_overlap 2252181, overlap 2252180 AAGCTCCTCGGTAAA AACGGCCGCG CGGC CGCGGCCGGC TTTCTTCGCCTCGTA TERM 2125 2252180 - 2252201 + g 71 -12.9 -3.10878 | opp_overlap 2252181, overlap 2252179 AGCTCCTCGGTAAAA ACGGCCGCG CGGC CGCGGCCGG CTTTCTTCGCCTCGT TERM 2126 2252200 - 2252181 - G 100 -16.4 -4.56597 | opp_overlap 2252180 2252179 GCTCCTCGGTAAAAA CGGCCGCG CGGC CGCGGCCG GCTTTCTTCGCCTCG TERM 2127 2252770 - 2252752 - G 71 -8.1 -3.86346 | CGATTTGGTCAGAAA GCCGACC CAGAC GATCGGC GCGACAACACACAAG aacC2 2255696 - 2255187 - | aminoglycoside N6`-acetyltransferase protein RHE_CH02151 2258137 - 2255987 - | putative mechanosensitive ion channel protein TERM 2128 2258423 - 2258378 - R 100 -29.9 -3.02461 | gap 1 GAATTTGGGGCAATA GCTGCGATGTGCGGCCCGCGGT CAG ACCGCGGGCCGCACATC-CGGC TCTCCCCCGAGTTGC RHE_CH02152 2258851 - 2258471 - | hypothetical protein RHE_CH02153 2259701 - 2258910 - | hypothetical protein TERM 2129 2259613 - 2259635 + gH 88 -13.4 -3.74693 | TCTCGATGTCTCGTT CCAGACGTCG ACC CGACGACTGG TTTCCTGACGTGAAG RHE_CH02154 2259665 - 2260453 + | TerC family transporter RHE_CH02155 2261355 - 2260537 - | metal-dependent hydrolase protein TERM 2130 2260598 - 2260576 - G 76 -11.3 -3.74693 | gap 1 GCTCATCTGATCAAA CGCCGGCACC ACGT GGT-CCGGCG TCTGCGCCATCACTG RHE_CH02156 2262045 - 2261359 - | TatD family deoxyribonuclease TERM 2131 2261690 - 2261706 + g 74 -12.3 -3.46647 | opp_overlap 2261690 2261689, overlap 2261688 CAGTGCAGGATGAAG GGGAAGG CCC CCTTCCC TGTTTCCTCGGTCAG metS 2263696 - 2262146 - | methionyl-tRNA synthetase TERM 2132 2262235 - 2262214 - G 70 -10.1 -3.61398 | gap 1, opp_overlap 2262234 GCGTTCCGGCAACAA GCCGCCCGGC CTC GCCGAG-GGC GGCAAAATCCCGCTT TERM 2133 2262444 - 2262417 - G 76 -12.8 -3.53012 | opp_overlap 2262419, overlap 2262436 GCCTGGCCGGCGAAA TAGCGGTCGGTT TCGG AAACGACCGCTA TGATCGAGGCAAGTG TERM 2134 2263241 - 2263280 + g 71 -6.2 -4.32034 | gap 1, opp_overlap 2263223 2263255, overlap 2263261 GACCGGCGTGCCCTG CGGGCCGTAAC-GCACGCC GTC GGCGCGCAGCTCCGTCTCG TTTTCCTGGTAATAG RHE_CH02158 2263930 - 2264718 + | hypothetical protein holB 2265754 - 2264729 - | DNA polymerase III subunit delta' tmk 2266457 - 2265747 - | thymidylate kinase protein dac 2267725 - 2266643 - | D-alanyl-D-alanine carboxypeptidase protein rlpA 2269013 - 2267907 - | rare lipoprotein A precursor protein TERM 2135 2268204 - 2268173 - G 71 -11.5 -3.40522 | gap 1, opp_overlap 2268175 2268176, overlap 2268154 2268175 2268176 AGGGCGCCACCAGAA CATGGGCGCCCGGC GCAAG GCCGGGCGC-CGCG TTGTAGCGCGCGCTC TERM 2136 2268175 - 2268204 + g 82 -15 -3.28924 | gap 1, opp_overlap 2268154 2268173 2268175 2268176, overlap 2268176 GGCGCCACCAGAACA TG-GGCGCCCGGC GCAAG GCCGGGCGCCGCG TTGTAGCGCGCGCTC TERM 2137 2268203 - 2268175 - G 74 -13 -3.27475 | opp_overlap 2268175 2268176, overlap 2268154 2268173 2268176 GGCGCCACCAGAACA TGGGCGCCCGGC GCAAG GCCGGGCGCCGC GTTGTAGCGCGCGCT TERM 2138 2268202 - 2268176 - G 80 -16.5 -2.56271 | opp_overlap 2268175 2268176, overlap 2268154 2268175 2268173 GCGCCACCAGAACAT GGGCGCCCGGC GCAAG GCCGGGCGCCG CGTTGTAGCGCGCGC TERM 2139 2268176 - 2268203 + g 80 -16.3 -2.57211 | gap 1, opp_overlap 2268154 2268176 2268175 2268173, overlap 2268175 GCGCCACCAGAACAT G-GGCGCCCGGC GCAAG GCCGGGCGCCGC GTTGTAGCGCGCGCT rapB1 2269506 - 2270327 + | autoaggregation protein (adhering protein) RHE_CH02165 2270894 - 2271589 + | TetR family transcriptional regulator RHE_CH02166 2271737 - 2272108 + | hypothetical protein phnA 2272299 - 2272523 + | alkilphosphonate uptake protein RHE_CH02168 2273367 - 2272561 - | putative transglutaminase-like protein RHE_CH02169 2274388 - 2273495 - | putative transglutaminase-like protein TERM 2140 2274216 - 2274192 - G 77 -2.7 -5.0133 | GACGGCCGCAAAAAA TCGACCAGCGC CAC GCAATTGCCGA AAACATCGTGGATCC TERM 2141 2274822 - 2274843 + r 100 -13 -5.14563 | GTTATGTTATGCTAA GCCCGCCT CACCCC AGGCGGGC TTTTTTCATGCAAGA RHE_CH02170 2275152 - 2274886 - | hypothetical protein TERM 2142 2275541 - 2275559 + H 71 -4.5 -4.63675 | AGCCTTTCCGGGTTA GTTCCCC CTGGA GTGGAAC TTTCTTTCGTTTCGT RHE_CH02171 2275611 - 2275865 + | hypothetical protein TERM 2143 2275899 - 2275921 + T 100 -14.8 -4.96848 | opp_overlap 2275899 CAGACATCACCAAAA GCCGGGCGCG ACT TGCGTCCGGC TTTTTCTGTCCCGAA TERM 2144 2275921 - 2275899 - T 90 -11.9 -4.34345 | opp_overlap 2275899 CAGACATCACCAAAA GCCGGGCGC GACTT GCGTCCGGC TTTTTCTGTCCCGAA RHE_CH02172 2276226 - 2275945 - | hypothetical protein TERM 2145 2277988 - 2277978 - g 76 -8.2 -4.11216 | overlap 2277979 GGCCCAGGCGCAAAA GGGC GCC GCCC TTGCCGACATTGCGG ppiD1 2276398 - 2278338 + | peptidyl prolyl cis-trans isomerase D signal peptide protein TERM 2146 2278522 - 2278501 - g 71 -11.5 -3.53012 | GCGTGCGCGGCGAAA GCGTCGACG AGAT CGTCGGCGC CGTCACCACCATGCG trpD 2278347 - 2279363 + | anthranilate phosphoribosyltransferase TERM 2147 2279479 - 2279491 + G 100 -10.5 -4.83169 | overlap 2279469 TGCAGGCGGGGCAGT CCGCG CCG CGCGG TTTTTATCAGGCCCT trpC 2279373 - 2280185 + | indole-3-glycerol-phosphate synthase moaC 2280241 - 2280684 + | molybdenum cofactor biosynthesis protein TERM 2148 2281393 - 2281432 + G 90 -17.8 -3.05384 | CGATCGAGATGGCGC GCGCTGCCGAGGCCGATG TCAT CGTCACCCTCGGCGGCGC TTCGGTCGGCGACCA moeA 2280681 - 2281904 + | molybdopterin biosynthesis protein RHE_CH02178 2282582 - 2281923 - | putative SAM-dependent methyltransferease protein TERM 2149 2282311 - 2282264 - G 91 -17 -3.28416 | opp_overlap 2282277 TAGCATCGACATCAA TCGCCGTCACGGCGGCAGCC CCGGCCTT GGCTGCCGCGATGGCGACGA GCCCGGAGCCGGCCC deaD 2284595 - 2282640 - | ATP-dependent RNA helicase protein TERM 2150 2284073 - 2284046 - G 71 -9.2 -3.79419 | gap 1, overlap 2284044 CGGTTGCAGAAAACA TCAGCGTCCGG CGCTCGT CCGG-CGCTGA ATCGAGAATGAATTC RHE_CH02180 2286550 - 2284694 - | putative adenylate cyclase protein RHE_CH02181 2287074 - 2286547 - | hypothetical protein cisZ 2288530 - 2287199 - | citrate synthase protein TERM 2151 2288762 - 2288780 + r 74 -12.4 -3.13403 | overlap 2288760 2288771 2288772 GGCATCGCCCTCGCC CTGCTGGC AGC GCCGGCAG TCTTCCTGCCGGCGA TERM 2152 2288771 - 2288795 + r 78 -12.8 -3.31144 | overlap 2288762 2288760 2288772 CTCGCCCTGCTGGCA GCGCCGGCAG TCTTC CTGCCGGCGA TTCTCAGGCTACAGC TERM 2153 2288772 - 2288794 + r 85 -16.3 -2.58544 | overlap 2288762 2288760 2288771 TCGCCCTGCTGGCAG CGCCGGCAG TCTTC CTGCCGGCG ATTCTCAGGCTACAG pyrG 2291203 - 2289575 - | CTP synthetase TERM 2154 2291325 - 2291302 - R 100 -16 -5.27476 | opp_overlap 2291300 2291299 CTGAACAAAAGAAAA CCGGCAGACC CGAG GGCCTGCCGG CGGTTTATGTCAAAG secG 2291835 - 2291347 - | preprotein translocase subunit SecG tpiAch 2292682 - 2291954 - | triosephosphate isomerase protein TERM 2155 2292114 - 2292100 - G 73 -11.4 -3.58905 | opp_overlap 2292099 AGCCGCCATAGAGAA GCCGCA TCT TGCGGC CTTCGTCGCCGAAGC RHE_CH02187 2293751 - 2292852 - | hypothetical protein TERM 2156 2293416 - 2293401 - G 70 -11.8 -3.18796 | GAAAATCACAGTGAA GGCGGC ATTC GCCGCC GGTCCCACCCTGGTG TERM 2157 2295081 - 2295119 + G 71 -5.9 -4.25104 | opp_overlap 2295061, overlap 2295060 CTGCCCAGATCACCA CCGACGACGTGATGATC TCGGC GGTCGGCATGCTGTCGG TTTTCATCCGCGAGC parE 2294075 - 2296057 + | DNA topoisomerase IV subunit B TERM 2158 2296162 - 2296134 - f 77 -10.2 -3.74693 | overlap 2296139 TGCGATTTCACGAAA CTGAAGCGGACG GCGCG CGACCGCCCCAG GGAATGGCGCCATCC RHE_CH02189 2296520 - 2297716 + | putative permease protein RHE_CH02190 2298192 - 2297734 - | acetyltransferase protein RHE_CH02191 2298323 - 2298742 + | hypothetical protein RHE_CH02192 2299740 - 2298739 - | hypothetical protein RHE_CH02193 2300592 - 2299975 - | hypothetical protein RHE_CH02194 2301176 - 2300592 - | putative nitroreductase protein RHE_CH02195 2301290 - 2302393 + | hypothetical protein TERM 2159 2302630 - 2302592 - T 72 -10.3 -3.53012 | gap 1, opp_overlap 2302588 2302597 2302599, overlap 2302594 2302596 2302597 CTGCCCTTCGCGAAA GACACTCCGACAGCGCCG AAGT CGGCGCTGTCGTATT-CC TGCTATTTTCAGGCC TERM 2160 2302629 - 2302594 - T 77 -11.8 -3.34398 | opp_overlap 2302588 2302597 2302599, overlap 2302592 2302596 2302597 GCCCTTCGCGAAAGA CACTCCGACAGCGCCG AAGT CGGCGCTGTCGTATTC CTGCTATTTTCAGGC TERM 2161 2302627 - 2302596 - T 83 -14.4 -3.24232 | opp_overlap 2302588 2302597 2302599, overlap 2302594 2302592 2302597 CCTTCGCGAAAGACA CTCCGACAGCGCCG AAGT CGGCGCTGTCGTAT TCCTGCTATTTTCAG TERM 2162 2302597 - 2302626 + T 91 -17.9 -3.32807 | opp_overlap 2302596 2302594 2302592 2302597, overlap 2302588 2302599 CTTCGCGAAAGACAC TCCGACAGCGCCG AAGT CGGCGCTGTCGTA TTCCTGCTATTTTCA TERM 2163 2302626 - 2302597 - T 86 -17.9 -2.54325 | opp_overlap 2302597 2302588 2302599, overlap 2302596 2302594 2302592 CTTCGCGAAAGACAC TCCGACAGCGCCG AAGT CGGCGCTGTCGTA TTCCTGCTATTTTCA TERM 2164 2302599 - 2302624 + T 100 -20.5 -3.21981 | opp_overlap 2302597 2302596 2302594 2302592, overlap 2302597 2302588 TCGCGAAAGACACTC CGACAGCGCCG AAGT CGGCGCTGTCG TATTCCTGCTATTTT thrS 2304645 - 2302639 - | threonyl-tRNA synthetase TERM 2165 2303310 - 2303329 + g 76 -9.2 -4.07885 | opp_overlap 2303312 CGGCTCGATCCCAGA GAGCGTCG GAAC CGACGCGC TTTTCCGGACGGGTG TERM 2166 2304012 - 2304040 + g 70 -12.4 -3.18681 | gap 1, overlap 2304013 GCATGGCGTTGTTGC TGTCGCCG-CGCC AATA GGCGCCGGCGACC TTCATCAGCTTGAAG TERM 2167 2304013 - 2304039 + g 76 -15.9 -2.50994 | gap 1, overlap 2304012 CATGGCGTTGTTGCT GTCGCCG-CGCC AATA GGCGCCGGCGAC CTTCATCAGCTTGAA RHE_CH02197 2305293 - 2304766 - | hypothetical protein RHE_CH02198 2305709 - 2305290 - | hypothetical protein RHE_CH02199 2306119 - 2305715 - | hypothetical protein nifUch2 2306571 - 2306125 - | nitrogen fixation protein folE 2306882 - 2307496 + | GTP cyclohydrolase I hisI 2307522 - 2307974 + | phosphoribosyl-AMP cyclohydrolase RHE_CH02203 2308089 - 2309051 + | putative phosphoesterase protein TERM 2168 2309108 - 2309091 - T 70 -5.5 -4.42806 | GCACGTTTAAACAAA CAGCCGA ACCC TCAGCCG GCAATATAGGCCTTG RHE_CH02204 2309536 - 2309102 - | putative inosine-5`-monophosphate dehydrogenase protein TERM 2169 2309385 - 2309396 + g 76 -7.2 -4.27316 | CGCTCGGTGAACATG CCGG AAAT CCGG TTTTCCATTCCGACG TERM 2170 2309574 - 2309557 - R 72 -9.9 -3.57144 | CCTCCTATGTCGAAA CTGTGAC ACGT GTCACAG GCATCCGCGGCGGCT RHE_CH02205 2310420 - 2309632 - | hypothetical protein TERM 2171 2310362 - 2310391 + g 72 -12.1 -3.31144 | opp_overlap 2310339 CGCGGGGGCCGTGCC GGCGGCTGGACCT CGGA AGGTTCGGGCGCC TTGTGCGGCTCGCCC TERM 2172 2310495 - 2310474 - H 100 -10.8 -6.06723 | CCTGCCAAAAAAAAA GCCGCCCG TAGTGC CGGACGGC GTAACCCGAATCCTG RHE_CH02206 2310679 - 2311323 + | hypothetical protein RHE_CH02207 2311572 - 2312057 + | hypothetical protein TERM 2173 2312521 - 2312557 + G 75 -13.5 -3.01712 | overlap 2312534 CAACCCGATGGGGCG GCCGGCGCTCGTCCTGC ACG GCGGGCCGGGCTCAGGC TGTTCGACCGCGGCG TERM 2174 2312874 - 2312888 + G 86 -8.5 -4.56775 | overlap 2312881 TCGACTGGCTTTGCC GCGGC ATGGC GCCGC TTTTTCCGGAAGAAT pipch2 2312417 - 2313391 + | proline iminopeptidase protein TERM 2175 2313848 - 2313822 - g 80 -14.4 -3.12351 | GCTCGGGACAGGCAA CGCCCGCCAGCA TGG CACTGGCGGGCA ATGCCAGCCCGCCGA RHE_CH02209 2313743 - 2314348 + | hypothetical protein TERM 2176 2314419 - 2314457 + F 91 -9.6 -4.7497 | gap 1, opp_overlap 2314425, overlap 2314421 2314422 GTCCCCGACCGGTGC CCA-AGAGCCGTTCCCG CTGTCC CGGGAACGGCTCGCTCG TTTTTGGTCCATCCC TERM 2177 2314421 - 2314454 + F 77 -12.4 -3.28873 | opp_overlap 2314425, overlap 2314419 2314422 CCCCGACCGGTGCCC AAGAGCCGTTCCCG CTGTCC CGGGAACGGCTCGC TCGTTTTTGGTCCAT TERM 2178 2314422 - 2314453 + F 82 -15.9 -2.56601 | opp_overlap 2314425, overlap 2314421 2314419 CCCGACCGGTGCCCA AGAGCCGTTCCCG CTGTCC CGGGAACGGCTCG CTCGTTTTTGGTCCA TERM 2179 2314450 - 2314425 - f 83 -16.2 -3.01924 | opp_overlap 2314422 2314421 2314419 GACCGGTGCCCAAGA GCCGTTCCCG CTGTCC CGGGAACGGC TCGCTCGTTTTTGGT RHE_CH02210 2314600 - 2315346 + | hypothetical protein RHE_CH02211 2315465 - 2317042 + | serine-type D-Ala-D-Ala carboxypeptidase protein RHE_CH02212 2317155 - 2317430 + | hypothetical protein RHE_CH02213 2317912 - 2317475 - | hypothetical protein sda 2319376 - 2317973 - | L-serine dehydratase protein TERM 2180 2318995 - 2318975 - G 72 -7.5 -4.13014 | opp_overlap 2318993, overlap 2318978 GTCATAGGCGGAAAA GATCATGCC GTT GGCATGGCC GGGAAGCGGCTGCTT TERM 2181 2319935 - 2319901 - g 81 -15.7 -3.09834 | opp_overlap 2319928, overlap 2319925 CATGCGATGACCGAA CGGCGCCGCGAATGG ATCTA CAATTCGCTGCGCCG CGATCTGAAGATGAT TERM 2182 2319966 - 2319990 + G 78 -6.4 -4.62069 | gap 1, opp_overlap 2319965 2319981 CGACACGCAGATTAT GGCCG-GCC TGCAGAAC GGCACGGCC TTTTTCGCCTCGACC RHE_CH02215 2319781 - 2320548 + | hypothetical protein TERM 2183 2321125 - 2321135 + G 72 -2.4 -4.74801 | TGCCGCTGTTTCCCT GGGC TAC GCCG TTTTTCGTAGGGTTG RHE_CH02216 2320545 - 2321534 + | hypothetical protein RHE_CH02217 2321955 - 2321563 - | MerR family transcriptional regulator RHE_CH02218 2323427 - 2322021 - | magnesium transporter protein def2 2323668 - 2324162 + | peptide deformylase RHE_CH02220 2324233 - 2324745 + | hypothetical protein TERM 2184 2325376 - 2325359 - g 71 -8.3 -3.83026 | GGCTCCCATACGAAA GGTGCCG ACAG CGGCGCC TCGCGCACTGAGGCC RHE_CH02221 2325041 - 2325409 + | hypothetical protein TERM 2185 2325437 - 2325452 + F 100 -11.8 -5.47159 | opp_overlap 2325437 GCGATCGGAACGAAA GGGCCG CAGT CGGCCC TTTTTTCTCTTCAGG TERM 2186 2325452 - 2325437 - f 85 -11.8 -3.91911 | opp_overlap 2325437 GCGATCGGAACGAAA GGGCCG CAGT CGGCCC TTTTTTCTCTTCAGG TERM 2187 2325574 - 2325549 - f 100 -6.2 -5.76633 | gap 1, opp_overlap 2325549 GGAGACATAAAAAAA CCTCGTGGAAC CAAGC GCT-CACGAGG GTTTTTTAAATAATC TERM 2188 2326086 - 2326101 + G 76 -6.1 -4.56597 | overlap 2326079 AGCGACCTCGTCCAG CCGGA TCGCTT TCCGG TTTTTGCGACGGGAC TERM 2189 2326498 - 2326548 + G 73 -3.3 -4.72272 | gap 3, overlap 2326524 TCGACCTCGGCCTTC CCGTCATGATGGCGGACGTCGACA TCCGGC TG-CG-CG-CCGCTTTCGAGACGG TTTTTGGTGAAACGA lipB 2325858 - 2326577 + | lipoyltransferase RHE_CH02224 2326657 - 2327577 + | permease protein RHE_CH02225 2327676 - 2328380 + | hypothetical protein TERM 2190 2328433 - 2328470 + F 71 -8.5 -3.92373 | CTCCAAGCCCGATTG TGCGTTCCTTTGTTTTA TGCG TAAAACTCCGGAACGCA TTTCTGGGTGGAGTC pccA 2328489 - 2330498 + | propionyl-CoA carboxylase alpha chain protein adhCch 2330574 - 2331701 + | formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein TERM 2191 2332050 - 2332071 + G 71 -13.7 -2.59039 | overlap 2332049 ATCCGATCGCCTTGT CGGCGCAGG CTCA TCTGCGCCG CTTCTACGAATCCTT RHE_CH02228 2331779 - 2332174 + | putative acetyltransferase protein TERM 2192 2332401 - 2332435 + G 78 -12 -3.73224 | GTCGTCACTGCTGAC GTGCCGCTCGCCGTGC GCT GCGTCGCGACCGGCGC TTTCGTCAGCGGTCC RHE_CH02229 2332185 - 2332652 + | hypothetical protein sugE 2332817 - 2333131 + | chaperone-like transmembrane protein TERM 2193 2333171 - 2333141 - T 79 -9.7 -4.11216 | gap 1, opp_overlap 2333135 2333134 GCCTGATCCCGAAAA TGCT-GCGAGGCGC CGAA GCGCCCCGCGATCA ATATCGATTTCAAAT RHE_CH02231 2333573 - 2333181 - | hypothetical protein pccB 2335223 - 2333691 - | propionyl-CoA carboxylase beta chain protein TERM 2194 2334278 - 2334306 + g 78 -6.6 -4.57073 | gap 1, opp_overlap 2334265 2334269, overlap 2334280 AACCGACAGTCGAGC CTTCGAC-GCGGC CGAA GCCGCAGACGATG TTTTTGGCGAAGCTC RHE_CH02233 2335718 - 2335260 - | hypothetical protein TERM 2195 2335633 - 2335598 - G 71 -11 -3.48276 | opp_overlap 2335597 2335622, overlap 2335622 TCGGGCCGGAGAGAA CGACGGCGCTGCGC ACATCATA GAGCGGCGCCGCCG GCTTGTTGGCCGAGA RHE_CH02234 2336571 - 2335786 - | hypothetical protein TERM 2196 2336253 - 2336224 - G 73 -6.3 -4.25104 | opp_overlap 2336223 2336248 GTCGCTCGAGGAAAA GCGCAGGATGTCT TCGA AGATCGCCTGCGC ATTGGTGGCCACGCC gph1 2337234 - 2336581 - | phosphoglycolate phosphatase protein rluC 2338184 - 2337231 - | pseudouridylate synthase, ribosomal large subunit C protein RHE_CH02237 2338694 - 2338317 - | CrcB family integral membrane protein RHE_CH02238 2338761 - 2339081 + | hypothetical protein TERM 2197 2339097 - 2339137 + T 100 -24.9 -3.55444 | opp_overlap 2339104, overlap 2339104 GTAATCGCCTTTCCG CTGAAAAGCCCGCATTGCG ATC CGCATTGCGGGCTTTTCGG TTTAGCGAGTCAGAG TERM 2198 2339130 - 2339104 - T 100 -18 -4.07568 | opp_overlap 2339097 2339104 CCTTTCCGCTGAAAA GCCCGCATTGCG ATC CGCATTGCGGGC TTTTCGGTTTAGCGA TERM 2199 2339104 - 2339130 + T 100 -18 -4.35524 | opp_overlap 2339104, overlap 2339097 CCTTTCCGCTGAAAA GCCCGCATTGCG ATC CGCATTGCGGGC TTTTCGGTTTAGCGA RHE_CH02239 2340197 - 2339154 - | hypothetical protein TERM 2200 2339496 - 2339463 - G 83 -7.9 -4.59773 | opp_overlap 2339495, overlap 2339465 CTTCACCGTGAAAAA GCCGCCGCCGACCGG CTGG CCGGGCAGCATCGCC TTGGCGAAGGCGCCG RHE_CH02240 2340650 - 2340270 - | hypothetical protein TERM 2201 2341004 - 2340991 - H 75 -9.5 -3.7511 | GGGCTCAGAAGAGAA GCGCG CAGC CGCGC CTTCAGATTTGAGCC TERM 2202 2341115 - 2341133 + H 72 -9.5 -3.62591 | CCTGCATCTCCAGCT CGGCGCC CGAAT GGTGCCG TTTGCCGGTTATGAC TERM 2203 2341507 - 2341542 + G 77 -14 -3.29263 | gap 1 CCCTCCTGAACCGCG CCTTGATCGCGCTGCAG GGG CCGC-GCGCGGTCGAGG TTCTCGCCGAACTCT TERM 2204 2341845 - 2341882 + G 93 -14.7 -4.09685 | gap 1, overlap 2341854 2341866 2341867 CTCGAATGGGCAATG CCGAAGGCGCGCCGCGCC GGC GGCGCC-CGCGCCGGCGG TTTTCCCGGCTCCGG TERM 2205 2341854 - 2341881 + G 78 -14.8 -3.05597 | gap 1, overlap 2341845 2341866 2341867 GCAATGCCGAAGGCG CGCC-GCGCCGGC GGC GCCCGCGCCGGCG GTTTTCCCGGCTCCG TERM 2206 2341936 - 2341922 - g 76 -8.5 -4.19238 | overlap 2341923 CTCCGAACTCGAAAA CGGCG CCGCC CGCCG CCGTGTCGGCCTGAA gcvT 2341125 - 2342195 + | glycine cleavage system aminomethyltransferase T gcvH 2342218 - 2342580 + | glycine cleavage system protein H gcvP 2342580 - 2345444 + | glycine dehydrogenase TERM 2207 2345819 - 2345767 - g 72 -7.7 -4.17448 | gap 3 CAAGGAAACCACAAA CGCCATCGCGAA-GCCGAGCGGTCCG ATAC CGG-CCGC-CGCCGTTGGCGACGCCG CCCCGCAGGCAAGCC lysM 2345651 - 2346691 + | cell-wall lytic enzyme TERM 2208 2346739 - 2346696 - f 75 -9.6 -3.83026 | gap 1, opp_overlap 2346735 2346736, overlap 2346736 CGTCGCGATAGCAAA GGCCTTTCGCGCCAATCCG AAACAGG CGGAACGGCG-GAAAGCCC ACCCCGTAGGCCTTT RHE_CH02245 2346829 - 2347134 + | flagellar basal body rod protein RHE_CH02246 2347236 - 2347859 + | hypothetical protein RHE_CH02247 2348334 - 2347942 - | hypothetical protein RHE_CH02248 2348807 - 2348427 - | hypothetical protein RHE_CH02249 2350061 - 2348820 - | putative selenocysteine lyase protein sufD 2351348 - 2350074 - | ABC transporter involved in Fe-S cluster assembly, permease protein sufC 2352128 - 2351373 - | ABC transporter involved in Fe-S cluster assembly, ATP-binding protein RHE_CH02252 2352574 - 2352233 - | putative endonuclease protein TERM 2209 2352618 - 2352598 - R 74 -12.6 -2.79796 | TTTGACCGCAGCAGA TCCTCGGG ACAAG CCCGAGGA TGACGGAGGCTGTGT sufB 2354102 - 2352633 - | cysteine desulfurase activator complex subunit SufB TERM 2210 2354305 - 2354332 + r 75 -12.6 -3.01712 | TGCGGTCAGGCCGCC TCGCCCGCCGAC CTGC GCCGGCAGGCGA TCTTCGCAAAAGCAG nifSch 2355389 - 2354295 - | pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) TERM 2211 2355763 - 2355749 - g 100 -8.5 -5.26875 | CCTCCAAGGAAAAAA GCGCG CCCAT CGCGC TCATCCTGCATCCGC RHE_CH02255 2355679 - 2356356 + | putative alpha/beta hydrolase protein RHE_CH02256 2356965 - 2356390 - | putative acetyltransferase protein TERM 2212 2356465 - 2356492 + gT 78 -13.4 -3.14132 | GACTCCATCGATCAG GATCGGCGCGCG TTCG CGCATGCCGATC TTCCTGAGGACCCGC TERM 2213 2356898 - 2356886 - GT 71 -4.7 -4.50976 | TCCCACATGACAAAA CGCAG CCT CGGCG TCTCCAATATCAGCC anmK 2358034 - 2356922 - | anhydro-N-acetylmuramic acid kinase tyrS 2358166 - 2359422 + | tyrosyl-tRNA synthetase TERM 2214 2359450 - 2359468 + T 100 -17.4 -4.54727 | TGGACGGATTTTGGA GCCGGCGC CCC GCGCCGGC TTTTCCTTTGGCGCG RHE_CH02259 2359768 - 2359487 - | hypothetical protein TERM 2215 2360374 - 2360359 - g 77 -2.4 -4.96848 | overlap 2360360 2360361 CTGGTCAGACAAAAA GCCCGC CAAC GCGGAT CAGGGCATGGTTTTC RHE_CH02260 2359961 - 2361622 + | putative trehalose synthase (glycosyl hydrolase) protein RHE_CH02261 2365033 - 2361635 - | hypothetical protein TERM 2216 2362210 - 2362188 - G 81 -9.8 -4.13728 | opp_overlap 2362197 2362206, overlap 2362189 TAGAGATCGGCAAAA CGCGATACCG CAC CGGCATCGCC GCTGGTGATATTGAC TERM 2217 2362209 - 2362189 - G 71 -13.3 -3.07755 | opp_overlap 2362197 2362206, overlap 2362188 AGAGATCGGCAAAAC GCGATACCG CAC CGGCATCGC CGCTGGTGATATTGA TERM 2218 2362348 - 2362367 + g 72 -4.2 -4.66833 | overlap 2362347 2362349 AATTTCCGACCTTCT CGTCGTTG AAGC CGACGACA TTTTTCAGCTTGGCG TERM 2219 2363867 - 2363902 + g 71 -8.3 -3.87994 | opp_overlap 2363868, overlap 2363868 GCCGCTGACGAGCAG ATCGATGCCGAAGCC CTTGCC GGCTTTGGGATCGAG TTTGTCGAGATCGAT TERM 2220 2365088 - 2365070 - H 70 -10.2 -3.35183 | opp_overlap 2365070 2365080, overlap 2365062 AATTAAAGAATTGAA CCCGGCCA TGC TGGACGGG TTTCCGTCCACTATA TERM 2221 2365070 - 2365088 + H 74 -10.2 -3.66378 | opp_overlap 2365062 2365070, overlap 2365080 AATTAAAGAATTGAA CCCGGCCA TGC TGGACGGG TTTCCGTCCACTATA TERM 2222 2365427 - 2365410 - g 73 -3.4 -4.74801 | gap 1 CAAGTTTATCAAAAA GC-ACCG TCTTT CGGTCGC GCTCGCCTCGGATGA bcp 2365159 - 2365632 + | bacterioferritin comigratory protein TERM 2223 2365758 - 2365726 - g 76 -11.2 -3.72576 | gap 1 CCCTTGCGCAGGAAA GCGCCACCC-GCTGG TTCG CCCGCCGGGTGTCGC TGCGCTCACCGCTCG RHE_CH02263 2365629 - 2366456 + | hypothetical protein TERM 2224 2366439 - 2366465 + F 74 -6.7 -4.4009 | gap 1 TACCGCTCCCTGGCA TCGATCAGC-CA TGCC TGAGCTGATTGA TTTTCTAACGTAAAC TERM 2225 2367146 - 2367175 + G 77 -13.5 -3.30124 | opp_overlap 2367150, overlap 2367149 TACGTGCCGGCCACA GAGACGGTCGGCG ATCG CGCCGACCGCATC TTCTCCAAGGTGACG TERM 2226 2367149 - 2367172 + G 71 -13.8 -2.5294 | opp_overlap 2367150, overlap 2367146 GTGCCGGCCACAGAG ACGGTCGGCG ATCG CGCCGACCGC ATCTTCTCCAAGGTG TERM 2227 2367171 - 2367150 - g 88 -17.3 -2.98823 | opp_overlap 2367149 2367146 TGCCGGCCACAGAGA CGGTCGGCG ATCG CGCCGACCG CATCTTCTCCAAGGT RHE_CH02264 2366648 - 2367874 + | metalloendopeptidase protein TERM 2228 2368239 - 2368229 - g 73 -8.2 -4.07568 | overlap 2368230 GTCGCTTCTTGAAAA GGGC CGC GCCC GCGCCCGCATGCCCC TERM 2229 2369461 - 2369435 - g 76 -10.8 -3.76224 | GCCTTATCCAGCAAA TGACGACAGCCG CGA CCGCCGCCGTCA TCGCGATCACGATGA rhlE1 2367966 - 2369549 + | ATP dependent RNA helicase protein TERM 2230 2369760 - 2369741 - g 76 -7.8 -4.25458 | AAGCCCAGGAAGAAA CCGGCC TCAGGATC GGCCGG ATCGAGCGCATCGGC RHE_CH02266 2369641 - 2370006 + | MutT/NUDIX family hydrolase RHE_CH02267 2370272 - 2369976 - | putative regulator protein of competence-specific genes RHE_CH02268 2370905 - 2370324 - | 4-hydroxyphenylacetate 3-monooxygenase small chain protein RHE_CH02269 2371104 - 2372186 + | putative amino acid ABC transporter, substrate-binding protein TERM 2231 2372808 - 2372849 + G 73 -8.6 -4.09685 | gap 1, opp_overlap 2372765 2372796 2372797 AAACGGCGCCGGCAA TCGCGCGCGCCGGCGGCAA CGTCC TCGTCGCCGGCTCG-GCCA TTTTCAAGGGTGGCA rpe 2372252 - 2372929 + | D-ribulose-5 phosphate 3-epimerase protein RHE_CH02271 2372926 - 2373651 + | hypothetical protein TERM 2232 2373905 - 2373923 + G 86 -7.3 -4.72986 | opp_overlap 2373901 2373900, overlap 2373885 2373893 CTATGGCAAACCGCC GGAGGCG CGTTT CGCCGCC TTTTTCGTGACGCTG RHE_CH02272 2373690 - 2374166 + | hypothetical protein TERM 2233 2374182 - 2374204 + F 72 -10.6 -3.53563 | GATTGCTGCCCGTCT TTGCTACAGG GGC CCTGAAGCAA TTTCAGCAAAAGTGT purB 2374294 - 2375601 + | adenylosuccinate lyase TERM 2234 2375623 - 2375640 + T 86 -14.1 -3.54951 | overlap 2375635 TTTTCTACGTCATGG CGGCGCC TTCC GGCGCCG TTGTCTACTGCGCTG RHE_CH02274 2376593 - 2376114 - | hypothetical protein TERM 2235 2376163 - 2376186 + g 72 -3.9 -4.56597 | gap 2, overlap 2376164 GAGCCCTTAGCATTC G-CCGAT-CGC TTAC GCGCATCGGTC TTTTTCGGCGCAGCG TERM 2236 2376522 - 2376483 - G 76 -11.4 -3.68302 | overlap 2376484 CGAATAGTCGAACAA GGGCCCGAGCATCGCC CAGATGAT GACGACGCTCAGGGCC AGGATGAAGATGACG RHE_CH02275 2377502 - 2376699 - | hypothetical protein RHE_CH02276 2377675 - 2378232 + | hypothetical protein RHE_CH02277 2378324 - 2380618 + | putative sensory box/GGDEF family protein TERM 2237 2381639 - 2381615 - g 100 -13.5 -4.46615 | opp_overlap 2381614 2381615 CATCATCAATGAAAA CGAGCCTGTGC GCG GCACCGGCCCG GTTCTCGTCAAGTAA purC1 2380890 - 2381654 + | phosphoribosylaminoimidazole-succinocarboxamide synthase purS 2381670 - 2381912 + | phosphoribosylformylglycinamidine synthase subunit PurS TERM 2238 2381921 - 2381944 + F 72 -10.2 -3.42056 | CGACTGACCATTGCA GACCTGCCCG TCAT CCGGCGGGTC TTATGGATTGAGCGT kptA 2382000 - 2382515 + | RNA 2`-phosphotransferase protein purQ 2382512 - 2383183 + | phosphoribosylformylglycinamidine synthase subunit I RHE_CH02282 2383272 - 2383670 + | hypothetical protein RHE_CH02283 2383946 - 2383692 - | hypothetical protein TERM 2239 2384032 - 2383998 - H 83 -16 -2.9518 | opp_overlap 2383995, overlap 2384020 CTTAATATTGACAGA GTCATGGTGACAAT ATAAGCA ATTGTCACCATGAC AAATTGGCTTCCAGA TERM 2240 2384976 - 2385004 + G 78 -10.1 -4.07687 | opp_overlap 2384959, overlap 2384977 GTCGCCGCCGGCGTG CGCGGCGGCTGGG TCG CCTGCCCGCCGCA TTTTGCCCAGCGCAT TERM 2241 2384977 - 2385003 + G 75 -13.6 -3.04398 | overlap 2384976 TCGCCGCCGGCGTGC GCGGCGGCTGGG TCG CCTGCCCGCCGC ATTTTGCCCAGCGCA RHE_CH02284 2384028 - 2385446 + | GntR family transcriptional regulator TERM 2242 2385501 - 2385481 - f 81 -4.5 -5.06103 | opp_overlap 2385481 ATAATTCCGAAAAAA CGCACACGC CTG ACGAGAGCG CTTTACCGCTCCGAC RHE_CH02285 2385569 - 2386147 + | hypothetical protein TERM 2243 2386186 - 2386233 + F 100 -22.2 -3.07895 | opp_overlap 2386195, overlap 2386191 AGCCTGCCCGCCCCT GTGAACTGACCCCCGAAGTTGG GTGT CCAACTTCGGAGGTCGGTTCAG TGTGTTGACGGTGGG TERM 2244 2386191 - 2386228 + F 100 -20.7 -3.19175 | opp_overlap 2386195, overlap 2386186 GCCCGCCCCTGTGAA CTGACCCCCGAAGTTGG GTGT CCAACTTCGGAGGTCGG TTCAGTGTGTTGACG TERM 2245 2386224 - 2386195 - f 91 -18.7 -2.52464 | opp_overlap 2386191 2386186 GCCCCTGTGAACTGA CCCCCGAAGTTGG GTGT CCAACTTCGGAGG TCGGTTCAGTGTGTT TERM 2246 2387049 - 2387026 - g 75 -4.5 -4.68384 | gap 1, opp_overlap 2387026, overlap 2387027 ATCGATCGAAGAAAA GCGCCCGACC GTTCA GGTCGG-CGA TCCCTTCACCGAAAA TERM 2247 2387965 - 2387941 - g 84 -15.7 -3.34104 | CTACAATGAGACCAA CGGCGTCGCCA TCC TGCCGACGCCG ACGATTGCAGGCGTC purL 2386319 - 2388550 + | phosphoribosylformylglycinamidine synthase II TERM 2248 2388652 - 2388691 + G 74 -12 -3.53012 | TCCGCGATCTGGCGG GCGACGGCGACCACTACG CCGC CGAAGTCGTCGCCGAAGC TTTCCGCGGCAAGAG RHE_CH02287 2388570 - 2388803 + | stress-induced morphogen protein TERM 2249 2388874 - 2388842 - T 71 -8.9 -3.81557 | opp_overlap 2388842 2388865, overlap 2388843 GCTTTGAAATAAAGA GGCCCGGGCGGTAGG ATT CCTTCCTGCCGGGCA GTTTCATTCAAAGCG TERM 2250 2388873 - 2388843 - T 71 -12.4 -2.88452 | opp_overlap 2388842 2388865, overlap 2388842 CTTTGAAATAAAGAG GCCCGGGCGGTAGG ATT CCTTCCTGCCGGGC AGTTTCATTCAAAGC RHE_CH02288 2389976 - 2388939 - | oxidoreductase protein aroQ2 2390429 - 2389980 - | 3-dehydroquinate dehydratase RHE_CH02290 2390829 - 2390461 - | putative 5-carboxymethyl-2-hydroxymuconate delta isomerase protein aroEch2 2391705 - 2390845 - | shikimate 5-dehydrogenase RHE_CH02292 2392497 - 2391724 - | amino acid ABC transporter ATP-binding protein RHE_CH02293 2393329 - 2392505 - | amino acid ABC transporter substrate-binding protein TERM 2251 2393378 - 2393397 + r 83 -9.2 -4.56775 | opp_overlap 2393372 GCGAAGCAAGGTTAG CGGACGGC TCTC GCCATCCG TTTTTCGAGGCCGCT RHE_CH02294 2394024 - 2393374 - | amino acid ABC transporter permease RHE_CH02295 2394702 - 2394034 - | amino acid ABC transporter permease RHE_CH02296 2395572 - 2394751 - | hypothetical protein TERM 2252 2395344 - 2395333 - G 72 -2.2 -4.77036 | GTCGATTACGAAAAA CTCG ATAT CGAA AACCTCGACGCCCTC RHE_CH02297 2396306 - 2395572 - | GntR family transcriptional regulator TERM 2253 2397085 - 2397065 - g 70 -10.5 -3.58343 | CTGATCAGGCGGAAA TGAACCTGC GTG GCAAGTTCA CCACCGATGACGAGG RHE_CH02298 2396560 - 2397453 + | catechol 1,2-dioxygenase protein RHE_CH02299 2397475 - 2398257 + | putative 2-oxo-hepta-3-ene-1,7-dioate hydratase protein hpaI 2398265 - 2399029 + | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein (4-hydroxyphenylacetate catabolism protein) RHE_CH02301 2399042 - 2399761 + | putative amino acid ABC transporter, substrate-binding protein RHE_CH02302 2401048 - 2399858 - | hypothetical protein RHE_CH02303 2401431 - 2401045 - | hypothetical protein TERM 2254 2401189 - 2401208 + g 71 -5.6 -4.38154 | overlap 2401191 TAGCGGCCATGTCGT TTCCACCG TCAA CGGAGGGA TTTTGTGGCCGATCT TERM 2255 2401353 - 2401322 - G 72 -7.2 -4.12188 | gap 1, overlap 2401324 GCAGTAGGCGCAAAA CACGTGCCGCCGCAA CGA CCGCAGCTGCACG-G AAAACAACCTCCGCC TERM 2256 2401352 - 2401324 - G 73 -10.9 -3.6581 | overlap 2401322 AGTAGGCGCAAAACA CGTGCCGCCGCAA CGA CCGCAGCTGCACG GAAAACAACCTCCGC TERM 2257 2401494 - 2401506 + H 100 -7.7 -5.72207 | ATCTCGAAGCGGTCT GACCA GAT TGGTC TTTTTTTGGTTTGGG TERM 2258 2401940 - 2401918 - g 79 -8.3 -4.26076 | opp_overlap 2401933, overlap 2401919 GCATCTCCAGGAAAA CGGCGTCAC CGTTC GCGGCGCCG CCTGACCGGTCACCG TERM 2259 2401942 - 2401919 - g 70 -11.6 -3.15324 | opp_overlap 2401933, overlap 2401918 CATCTCCAGGAAAAC GGCGTCACCG TTCG CGGCGCCGCC TGACCGGTCACCGGA grlA 2401610 - 2401945 + | glutaredoxin protein TERM 2260 2401986 - 2402023 + F 100 -15.6 -3.91072 | gap 1 TCCACATCTGTTTCT CGAGTCCGAGGCGCTGC GGTGA GCAGCGCCTTGG-CCCG TTTATGGGAATTTCA TERM 2261 2402084 - 2402115 + G 70 -7.3 -3.96624 | gap 1, opp_overlap 2402059, overlap 2402074 2402085 CGGGCCGCCTGCCCA TG-GGCAAGCGTGA GTTCA TCGCGCTTGCCGCC TTTCTGATGGCCATC TERM 2262 2402246 - 2402257 + G 74 -5.8 -4.4009 | overlap 2402243 2402242 ATCTGCTCGGTTTCG GCTG CGCC CAGC TTTTCTACGGTCCGC RHE_CH02305 2402083 - 2403288 + | Bcr/CflA subfamily drug resistance transporter TERM 2263 2404104 - 2404124 + G 76 -12.5 -3.53012 | overlap 2404102 GAAGTCTATGGCCTT GGCGACCGG CTG CCGATCGCC TTTGCGGCGACCGCC RHE_CH02306 2403324 - 2404604 + | putative bicyclomycin resistance transporter protein RHE_CH02307 2404639 - 2405112 + | acetyltransferase protein TERM 2264 2405216 - 2405262 + T 71 -12.3 -2.82516 | gap 1 TTTCGTCAGGGCAGA GGCGATTGGCGATGGGCATACC TCCA GGTACGTCCGA-GCCGATCGCC TCTGATCCTGGCGGA RHE_CH02308 2406335 - 2405511 - | putative inositol monophosphatase protein RHE_CH02309 2407196 - 2406369 - | putative inositol monophosphatase protein TERM 2265 2406712 - 2406736 + g 74 -14.3 -2.6063 | opp_overlap 2406686, overlap 2406710 2406709 ATCTGGTTCAAGGCG GCAGGCTCAGC CAC GCTCAGCCTGC TCGATTGTCCATCCC RHE_CH02310 2408113 - 2407241 - | hypothetical protein TERM 2266 2407701 - 2407714 + g 88 -3.7 -5.27938 | AGCGAGCAATAGGTG GCGCC TTCG GGCAC TTTTTCTTTCACGAT TERM 2267 2408076 - 2408025 - G 70 -11.7 -3.16267 | gap 3, opp_overlap 2408026 2408027, overlap 2408020 2408042 2408044 TTGAAGGAGACCGAA CGTGGCG-CATCGGCAAAGAGTGCCG GAC CGGCAC-CGTCGTCGATGTCGCCA-G TTTCCGGATCATCAG TERM 2268 2408026 - 2408076 + g 75 -11.9 -3.58343 | opp_overlap 2408020 2408025 2408042 2408044, overlap 2408027 TGAAGGAGACCGAAC GTGGCG-CATCGGCAAAGAGTGCCG GAC CGGCAC-CGTCGTCGATGTCGCCAG TTTCCGGATCATCAG TERM 2269 2408027 - 2408075 + g 78 -15.4 -2.74792 | opp_overlap 2408020 2408025 2408042 2408044, overlap 2408026 GAAGGAGACCGAACG TGGCG-CATCGGCAAAGAGTGCCG GAC CGGCAC-CGTCGTCGATGTCGCCA GTTTCCGGATCATCA glsA 2409101 - 2408172 - | glutaminase TERM 2270 2408942 - 2408925 - G 72 -7.7 -4.18018 | GCTCTGGATCGAAAA GGCGATA TCGG CATCGCC GACCCGAAAGACCTG TERM 2271 2409126 - 2409143 + r 73 -8.3 -4.18018 | opp_overlap 2409126 CCGAATAACAAAAAA GCCGCCC GAAA GAGCGGC TTTTCCATAAGCGAA TERM 2272 2409143 - 2409126 - R 100 -10.5 -5.64873 | opp_overlap 2409126 CCGAATAACAAAAAA GCCGCCC GAAA GAGCGGC TTTTCCATAAGCGAA rpsD 2409791 - 2409174 - | 30S ribosomal protein S4 TERM 2273 2409953 - 2409932 - R 87 -12.3 -4.07647 | opp_overlap 2409934 2409949 ACATGTCAAATGAAA CACCGGACA TTGC TGCCCGGTG CTTGGCGCGGTCTTT RHE_CH02313 2411510 - 2410017 - | hypothetical protein murI 2412457 - 2411657 - | glutamate racemase RHE_CH02315 2413268 - 2412438 - | tRNA/rRNA methyltransferase protein RHE_CH02316 2415312 - 2413273 - | hypothetical protein TERM 2274 2413603 - 2413582 - G 74 -5.9 -4.49556 | gap 1, overlap 2413585 GGTGCAGGAAAGAAA GAT-CGCCAA TGT CTGGCGGATC TGACCGGGCCGCGTC TERM 2275 2413842 - 2413820 - G 74 -9 -3.93057 | GGGAAAACGACGAAA GCAACTGCCG TTC CGGCCGCCGC GCCAATCACGGTCTC TERM 2276 2415325 - 2415308 - G 72 -4.1 -4.66535 | overlap 2415309 AAGCGGGAAAACAAA TGCATGA GCCC TCATGCC ATGAAGCATCGATAG RHE_CH02317 2415945 - 2415403 - | hypothetical protein TERM 2277 2415706 - 2415732 + g 81 -7.3 -4.40003 | opp_overlap 2415697, overlap 2415710 CGAAATGCCATCCTC GTCGGCCGC-CGG GTT CCGGGCGGCT-AC TTTGTATTTGTCGCC icd 2417403 - 2416090 - | NADP-dependent isocitrate dehydrogenase protein TERM 2278 2417396 - 2417377 - G 93 -16.4 -3.70149 | opp_overlap 2417350 2417377 GGGATAGCATTGAAA CGGCGGGG ATTT CCCCGCCG TTTTCATTTTGGGAG TERM 2279 2417377 - 2417396 + g 100 -16.4 -4.67038 | opp_overlap 2417377, overlap 2417350 GGGATAGCATTGAAA CGGCGGGG ATTT CCCCGCCG TTTTCATTTTGGGAG RHE_CH02319 2417420 - 2417866 + | acetyltransferase protein TERM 2280 2418208 - 2418197 - g 70 -7.2 -4.07885 | GACCTTCCCGGAAAA GGGG CTGG CCCC AAGACCGGAGGAGCG gstch8 2417955 - 2418581 + | glutathione S-transferase protein RHE_CH02321 2419395 - 2418634 - | AraC family transcriptional regulator TERM 2281 2419679 - 2419648 - R 77 -10.8 -3.86202 | GCCCATCACAGGAAA TCCAGCCACGGCGC GTCC GCGCCGCGAATGAA TCAGTATCTAAAGAA alaS 2422563 - 2419864 - | alanyl-tRNA synthetase TERM 2282 2421137 - 2421172 + g 72 -7.6 -4.1899 | gap 1, overlap 2421115 2421141 ACGCCTTCGGCGGCT TCAGTGTCGTAACCGAG GAA CTCGGTTGCGCCA-TGC TTTTCCCTAAGCTCG TERM 2283 2421141 - 2421169 + g 76 -13.9 -3.11208 | overlap 2421137 CTTCGGCGGCTTCAG TGTCGTAACCGAG GAA CTCGGTTGCGCCA TGCTTTTCCCTAAGC TERM 2284 2421931 - 2421906 - G 71 -6.1 -4.28361 | gap 1, overlap 2421907 2421909 2421928 CGAACTGCATGAAAA CCAGGTTCCAGA ATT CCAGGAACC-GG TCGCCGTCTTCCTCG TERM 2285 2422641 - 2422610 - R 100 -13 -4.99645 | AGCCGACAAACAAAA CCGGCCGCATTC TGATGAGG GAAGGCGGCCGG CTGACATATCAGATC recA 2423762 - 2422674 - | recombinase A TERM 2286 2424236 - 2424197 - g 81 -9.8 -4.11394 | opp_overlap 2424174 2424173 2424197 2424198 2424229, overlap 2424198 ACGCCACTGGCAAAA TGGTCGGCGACGCTGCCG ATTT CGCCGGCATCGACGACCG CCCCTTCGTCTTCCT TERM 2287 2424235 - 2424198 - g 71 -13.3 -3.06515 | opp_overlap 2424174 2424173 2424198 2424197 2424229, overlap 2424197 CGCCACTGGCAAAAT GGTCGGCGACGCTGCCG ATTT CGCCGGCATCGACGACC GCCCCTTCGTCTTCC TERM 2288 2424447 - 2424429 - g 71 -13.2 -3.02461 | opp_overlap 2424441, overlap 2424431 2424434 CAATCTGCCGGAAGA GACGATCG CGG CGATCGTC GCCAAGGCGAACTTC RHE_CH02324 2423977 - 2424936 + | carbohydrate kinase protein RHE_CH02325 2425026 - 2425952 + | hypothetical protein RHE_CH02326 2428694 - 2426091 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 2289 2428458 - 2428425 - G 73 -13.1 -3.14132 | gap 1, opp_overlap 2428424 2428421 GTGGCTGTTGAGGAA GGCGC-GCGCCAGGCT GTC AGACTGGCGCTGCGGC ATCACTTCAATGAAG TERM 2290 2428610 - 2428576 - G 76 -5.5 -4.55023 | overlap 2428577 2428578 TTGAAGACGACAAAA GCCCCGGCGGCCGCG ATCAA CACGAGCGCCAGGAG AAGAATGCGCAAAAC TERM 2291 2428805 - 2428791 - H 73 -5.6 -4.57569 | overlap 2428793 2428794 CCACGCCGGCAAAAA CACCGG TCG CCGGCA AGACCGCTTGAATTC TERM 2292 2428803 - 2428793 - H 71 -8.2 -3.90316 | overlap 2428791 2428794 ACGCCGGCAAAAACA CCGG TCG CCGG CAAGACCGCTTGAAT RHE_CH02327 2429001 - 2430026 + | hypothetical protein TERM 2293 2430084 - 2430099 + F 77 -10.4 -3.71917 | opp_overlap 2430084 TGAAGTTGCATAAAA GCCGCA ATGC TGCGGC TTTCACGTTTCCGAT TERM 2294 2430099 - 2430084 - f 88 -10.4 -4.4017 | opp_overlap 2430084 TGAAGTTGCATAAAA GCCGCA ATGC TGCGGC TTTCACGTTTCCGAT RHE_CH02328 2430258 - 2431067 + | hypothetical protein TERM 2295 2431100 - 2431134 + T 75 -12.8 -2.99545 | opp_overlap 2431106, overlap 2431102 TGGGAGATGGCTCAA CAAAAAGCGCCGCGAT TAG ATCGCGGCGCTGACTG TGTCTCATCTCTGCA TERM 2296 2431128 - 2431106 - T 100 -19.2 -5.06816 | opp_overlap 2431102 2431100 ATGGCTCAACAAAAA GCGCCGCGAT TAG ATCGCGGCGC TGACTGTGTCTCATC dksA 2431599 - 2431159 - | DnaK suppressor protein TERM 2297 2431319 - 2431335 + g 77 -3.7 -4.87803 | overlap 2431298 2431321 CGCTGCAGCGCCGCG TCGATCT TGG AGATCAA TTTTCTTTGCCGGTC RHE_CH02330 2431854 - 2432348 + | putative phosphohistidine phosphatase protein RHE_CH02331 2432424 - 2433896 + | hypothetical protein RHE_CH02332 2433893 - 2434972 + | hypothetical protein RHE_CH02333 2435182 - 2435733 + | hypothetical protein TERM 2298 2435756 - 2435785 + T 86 -10.7 -4.2828 | gap 1, overlap 2435762 GCATGACGGGTTTTT C-CGAAGCGGCGGG TTT CCCGCCGTTTAGCG TTTTAGTGCCTCAGG TERM 2299 2435762 - 2435778 + T 95 -15.1 -3.77484 | overlap 2435756 CGGGTTTTTCCGAAG CGGCGGG TTT CCCGCCG TTTAGCGTTTTAGTG folK 2436314 - 2435796 - | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinas e protein folB 2436672 - 2436307 - | dihydroneopterin aldolase protein folP 2437574 - 2436669 - | dihydropteroate synthase protein TERM 2300 2436991 - 2436970 - G 70 -10.1 -3.66178 | opp_overlap 2436966, overlap 2436971 TTGGCGAAGCCGAAA CCCGGATCG AGCA CGATCCGGT CGCTGTTGACTCCGG TERM 2301 2436990 - 2436971 - G 72 -13.6 -2.79492 | opp_overlap 2436966, overlap 2436970 TGGCGAAGCCGAAAC CCGGATCG AGCA CGATCCGG TCGCTGTTGACTCCG RHE_CH02337 2437581 - 2438267 + | hypothetical protein TERM 2302 2438506 - 2438537 + T 100 -11.4 -5.32882 | overlap 2438508 TGGTAATGCGCCCGC CTCGCCTCGCTCGC ACCA GCGCGCGAGGCGTC TTTTTTGTGGTGATG TERM 2303 2438508 - 2438535 + T 100 -18.4 -4.29153 | overlap 2438506 GTAATGCGCCCGCCT CGCCTCGCTCGC ACCA GCGCGCGAGGCG TCTTTTTTGTGGTGA fdx 2438945 - 2438625 - | ferredoxin, 2Fe-2S FDII electron transport iron-sulfur protein RHE_CH02339 2439534 - 2439151 - | hypothetical protein TERM 2304 2440209 - 2440179 - g 78 -12.4 -3.72324 | overlap 2440180 CAGGGCCAGGAAGAA GCGCAGCGCCGCAG CCG CCGCGGCGCCGGGG CCGAGCAGGCTTCCA TERM 2305 2440208 - 2440180 - g 79 -15.9 -2.83073 | overlap 2440179 AGGGCCAGGAAGAAG CGCAGCGCCGCAG CCG CCGCGGCGCCGGG GCCGAGCAGGCTTCC TERM 2306 2443546 - 2443576 + G 84 -17.6 -2.78715 | CGGCGCTTTCGGGCG TTCTCGATGCGGGC GGT GCCCGCTTCGAGGA TCTCGTCGGCGGCTT TERM 2307 2443658 - 2443608 - g 75 -13.8 -3.05463 | ACCGGGCGCATCGAA GGCCGCCTCAGCGATGCCCATGCG CGG CTCGGGAGCATGGCCGAGGAGGCC GCGGCGCGCATTGAA TERM 2308 2445686 - 2445659 - g 73 -7 -4.24948 | gap 1, opp_overlap 2445668 CGACGAGATCGAAAA GACCATG-CGCGG GCT CGGCGGCATGATC GAGACCGTGTTCGAG TERM 2309 2446498 - 2446479 - g 70 -12.1 -3.14132 | opp_overlap 2446497 TTGGGCCGGCAGGAA CCGCCGC GGGAAA GCGGCGG CTGGATCAGCGATCT RHE_CH02340 2439999 - 2446973 + | hypothetical protein TERM 2310 2446993 - 2447027 + F 75 -9.3 -4.08692 | opp_overlap 2446990, overlap 2446999 GGCCGATAACAGTGA TCGGAAGCCGCTTGA TCGTC TCAAGCGGCTTTCAC TTTTGAGGCGGGTTG TERM 2311 2446999 - 2447021 + F 93 -13.5 -3.92659 | opp_overlap 2446990, overlap 2446993 TAACAGTGATCGGAA GCCGCTTGA TCGTC TCAAGCGGC TTTCACTTTTGAGGC RHE_CH02341 2447075 - 2447635 + | isochorismatase protein RHE_CH02342 2448095 - 2447694 - | hypothetical protein RHE_CH02343 2448758 - 2448309 - | hypothetical protein TERM 2312 2449789 - 2449769 - gR 72 -9.6 -3.64487 | CCACAGCCTCAACAA CGCCAGGC AAACA GCCAGGCG CGACAATGACGGATG RHE_CH02344 2448757 - 2449821 + | D-alanyl-D-alanine carboxypeptidase protein RHE_CH02345 2451084 - 2449831 - | hypothetical protein TERM 2313 2450096 - 2450113 + g 74 -4.7 -4.63527 | opp_overlap 2450083 2450094, overlap 2450098 GAGCTCCATGAGACG CAGCGGT TGCG GCCGCCG TTTTTGGCCTGGTAC RHE_CH02346 2451844 - 2451233 - | putative ABC transporter protein RHE_CH02347 2453240 - 2451870 - | putative ABC transporter protein RHE_CH02348 2454094 - 2453249 - | ABC transporter ATP-binding protein RHE_CH02349 2455265 - 2454096 - | ABC transporter permease TERM 2314 2456152 - 2456166 + G 84 -11.4 -4.21908 | opp_overlap 2456145 GCGATGAAGGCCGAA GCCGAG AGA CTCGGC TTTTCGATCATGATC RHE_CH02350 2455366 - 2456349 + | muconate cycloisomerase I protein RHE_CH02351 2457518 - 2456301 - | putative 3-phenylpropionic acid permease protein TERM 2315 2456507 - 2456491 - G 88 -7.9 -4.83243 | opp_overlap 2456505, overlap 2456493 CCGACATAAAAGAAA TAGGCGC CCT GCGCCGA GGCCTCCTGCGTTTC TERM 2316 2456505 - 2456493 - G 78 -10.5 -4.02348 | overlap 2456491 GACATAAAAGAAATA GGCGC CCT GCGCC GAGGCCTCCTGCGTT TERM 2317 2456621 - 2456607 - G 81 -12.8 -3.75024 | opp_overlap 2456606 TTGCAGCAGGAAGAA GCCGGC AAA GCCGGC ATTCATGGGAAATAG RHE_CH02352 2458494 - 2457682 - | putative metallo-phosphoesterase protein TERM 2318 2458864 - 2458914 + G 71 -8.3 -3.85698 | gap 1 ATCACATCCTATCTG CGGGGATTGCCGGATGACGGATTT CAGA AGCTGCG-CATCTGGTACTCCCCG TTTCTGAGAACACGA RHE_CH02353 2458717 - 2459466 + | putative phosphoglycerate mutase protein TERM 2319 2459543 - 2459567 + T 95 -11.4 -4.62069 | CGCACCACGACTTGC TCCCTCCCCC TTAGT GGGGGAAGGA TTTTTGCAGTCGCCG RHE_CH02354 2461033 - 2459594 - | FAD-dependent oxidoreductase protein TERM 2320 2462002 - 2461978 - g 71 -4.9 -4.46656 | overlap 2461980 GCGAGAAGATGAAAA TTCCGGTCTTC CAC GACGACCAGCA CGGCACCGCGATCAT TERM 2321 2463233 - 2463197 - g 76 -8 -4.25283 | gap 1 AGGCCGCTACGAAAA GCACTTGCGCGACGTCC GCCA GATCATCG-GCAAGCGC AAGGATGTCCGCGAT dme 2461473 - 2463785 + | malic enzyme TERM 2322 2463776 - 2463791 + T 78 -11.8 -3.53012 | CGTCGAGGCATCGCA GCCGGC ATAA GCCGGC TTTGCGACCAAGAGG TERM 2323 2463851 - 2463819 - T 85 -14.2 -3.39862 | AGGAATCACGGATAA CCAGCACTCGCGGA GATGT TTCGCAAGTGCTGG CGGAAGCACGCCTTG RHE_CH02356 2464102 - 2463809 - | hypothetical protein TERM 2324 2464149 - 2464126 - R 86 -18.2 -2.70932 | overlap 2464128 2464140 TCCGCTTTGGAATGA GATGCGCCGC AAAA GCGGCGCATC CACGTGCTCAGGCGA TERM 2325 2464147 - 2464128 - R 82 -15 -2.90075 | overlap 2464126 2464140 CGCTTTGGAATGAGA TGCGCCGC AAAA GCGGCGCA TCCACGTGCTCAGGC RHE_CH02357 2465176 - 2464157 - | putative myo-inositol dehydrogenase protein RHE_CH02358 2465999 - 2465205 - | hydroxypyruvate isomerase protein RHE_CH02359 2466875 - 2466087 - | sugar ABC transporter, ATP-binding protein RHE_CH02360 2467996 - 2466875 - | sugar ABC transporter, permease protein RHE_CH02361 2469075 - 2468122 - | sugar ABC transporter, substrate-binding protein RHE_CH02362 2469254 - 2470249 + | LacI family transcription regulator RHE_CH02363 2471212 - 2470715 - | ribonuclease H protein RHE_CH02364 2471786 - 2471415 - | hypothetical protein RHE_CH02365 2473102 - 2471864 - | RNA polymerase ECF-subfamily sigma factor RHE_CH02366 2473377 - 2473099 - | hypothetical protein TERM 2326 2473985 - 2474003 + G 74 -5.2 -4.56775 | GCAGCATGGTCGTGA TCGGCGGT GAG AATGCCGA TTTTTGCGCCGAGCT RHE_CH02367 2473741 - 2474838 + | hypothetical protein RHE_CH02368 2475531 - 2474842 - | nitroreductase protein TERM 2327 2475504 - 2475491 - G 77 -4.5 -4.82901 | overlap 2475492 2475493 TCGGCCGGAGAAAAA CCGGA TGCC TCCGA CAGGGCATCCTCAAC TERM 2328 2476070 - 2476090 + H 100 -10.4 -5.4505 | opp_overlap 2476070 ACGACCACCCGAACA GCCGCTAG TCTAC CTGGCGGC TTTTTTGTTCCGCAC TERM 2329 2477185 - 2477160 - g 73 -11.1 -3.55548 | gap 1, overlap 2477181 2477182 GAAGACCTGGCGAAA GCCGC-TGGCGC GCG GCGCAAAGCGGC GGCGGCTTAACCAGC aroG 2476131 - 2477195 + | phospho-2-dehydro-3-deoxyheptonate aldolase RHE_CH02370 2478019 - 2477192 - | putative periplasmic component of the Tol biopolymer transport system TERM 2330 2477270 - 2477246 - G 71 -13.6 -2.66316 | overlap 2477243 GCCGTCAGGAGACCA GCAGGGCACA TTGAT CGTGCCCTGC CCGCCGAAAAGCTCG nadE 2479725 - 2478046 - | NAD synthetase TERM 2331 2478123 - 2478139 + g 73 -10.8 -3.65812 | TGATCTTCACGCCCG GCGCCG ATTGC CGGCGC TTATATTCGGCGAGA RHE_CH02372 2479780 - 2480445 + | hypothetical protein RHE_CH02373 2480864 - 2480463 - | hypothetical protein TERM 2332 2481834 - 2481819 - g 71 -8.2 -3.93262 | CTCGAAGACAGCAAA CGGCAG ATCG CCGCCG TCAACGAGCGCGTCG TERM 2333 2481973 - 2481946 - g 71 -11.2 -3.53343 | gap 1, opp_overlap 2481945 2481942 AACGTTTCCTGCAAA GCCGCGCCGACGG CTA CCG-CAGCGAGGC CTGGTTTTCGGTCGG RHE_CH02374 2481141 - 2482979 + | putative multidrug resistance ABC transporter, ATP-binding and permease protein TERM 2334 2482994 - 2483010 + T 86 -9.3 -4.84017 | opp_overlap 2482994, overlap 2483007 AAAAGCAATAAAAAA CCCGGCG TCA CTCCGGG TTTTTGTCACCCGTT TERM 2335 2483010 - 2482994 - T 100 -9.3 -5.61689 | opp_overlap 2482994 2483007 AAAAGCAATAAAAAA CCCGGCG TCA CTCCGGG TTTTTGTCACCCGTT aroF 2484410 - 2483037 - | aldolase DAHP synthetase protein TERM 2336 2483849 - 2483868 + g 72 -7.8 -4.14392 | opp_overlap 2483849 2483848 TGTCCTTGACGAAAC CGAGCATC CACT GATGCACG TTTTCGAGATTAGCG TERM 2337 2484881 - 2484846 - g 71 -12.6 -3.01712 | opp_overlap 2484877, overlap 2484818 TCTCGCTTGGCAAGA CCGACGCCCGCAACAT CTTC ATGTCTCAGACGTCGG GTGAGCTGACCGACA TERM 2338 2485580 - 2485539 - g 78 -2.9 -5.02074 | gap 1, overlap 2485540 TTAGTCCGGAAAAAA TCCTGTTTTTCGTCGCCGAC GGC GTCGGCGAC-AGCTACAAGC CCTCGACATGTACCA TERM 2339 2485771 - 2485790 + G 74 -5.6 -4.42806 | gap 1, opp_overlap 2485768 2485771 ACCGACGAAAATGCA GGCCTGTGC CTC GCCC-GGCC TTTATTTCGAAGTCA RHE_CH02376 2484599 - 2485882 + | hypothetical protein gor 2487274 - 2485889 - | glutathione reductase TERM 2340 2486268 - 2486282 + g 70 -7.8 -4.05004 | GGGATCAGTTCATGG TCCGGC CGG GTCGGA TTGTTCTTGTACTCG RHE_CH02378 2488020 - 2487736 - | acylphosphatase TERM 2341 2488089 - 2488072 - R 100 -9.8 -5.58179 | opp_overlap 2488072 GATCATAACAAAAAA GCCCGG ACGATG CCGGGC TTTTGCAAATCTGCG TERM 2342 2488072 - 2488089 + r 79 -9.8 -4.13014 | opp_overlap 2488072 GATCATAACAAAAAA GCCCGG ACGATG CCGGGC TTTTGCAAATCTGCG RHE_CH02379 2488690 - 2488115 - | hypothetical protein rpiA 2489404 - 2488706 - | ribose-5-phosphate isomerase A gph2 2489651 - 2490355 + | phosphoglycolate phosphatase TERM 2343 2490617 - 2490597 - T 100 -16.1 -5.27023 | ACGCCAAAAACAAAA CGGGCGGCC CAA GACCGCCCG CCCGTATAACAATCA RHE_CH02382 2492544 - 2490643 - | hypothetical protein TERM 2344 2492821 - 2492805 - H 83 -9.3 -4.57341 | overlap 2492809 AACGTGGCCGAAAAA GCACGCC GCC GGCGGGC GCAAACATGACTGTG fumC 2492946 - 2494337 + | fumarate hydratase TERM 2345 2494523 - 2494486 - T 74 -6.9 -4.42238 | opp_overlap 2494489, overlap 2494489 GTACTTCAAGGAAAA GAGTCTGTCGCGCCCAA GGAC TTGGACGCACCGGATTC CTGTGACGAGCACAA rapB2 2495460 - 2494633 - | autoaggregation protein (adhering protein) TERM 2346 2495640 - 2495602 - H 73 -8 -4.13767 | overlap 2495614 2495632 CTGCCGACGGCAAAA TGCGGCACGACATGACCG CAA CGGTCAAACTCCGCCGCA TGCAGATTGCTTTTG fumB 2495822 - 2497324 + | fumarate hydratase class I protein RHE_CH02386 2497949 - 2499016 + | putative sensory box/GGDEF family protein RHE_CH02387 2499804 - 2499193 - | putative pyridoxine biosynthesis protein RHE_CH02388 2500770 - 2499841 - | putative hydrolase protein TERM 2347 2500257 - 2500234 - G 76 -8.1 -4.24002 | overlap 2500236 GCCGAAATCGGAAAA GAGCCAAGC CATCTC GCTTGGCGC GCCGATCAGCACGAG TERM 2348 2500255 - 2500236 - G 71 -9.3 -3.71804 | overlap 2500234 CGAAATCGGAAAAGA GCCAAGC CATCTC GCTTGGC GCGCCGATCAGCACG TERM 2349 2501130 - 2501107 - g 74 -10.3 -3.70902 | gap 1, opp_overlap 2501125 TGCCGCAGATGGAAA CGCGCCGGCT GATCG AG-CGGCGCG GCGACGAGCGCGACA RHE_CH02389 2500863 - 2501330 + | MarR family transcriptional regulator TERM 2350 2501435 - 2501384 - T 100 -25.4 -4.89852 | gap 1, opp_overlap 2501387, overlap 2501387 CGACATGCATAAAAA GACCCTCAAGCGCCTCGCAT-GAAC CAC GTTCGATGCGAGGCGCGTGAGGTTC AATGCAATGACGGCG TERM 2351 2501387 - 2501432 + T 100 -25.7 -3.06796 | gap 1, opp_overlap 2501387 2501384 CATGCATAAAAAGAC CCTCAAGCGCCTCGCAT-GAAC CAC GTTCGATGCGAGGCGCGTGAGG TTCAATGCAATGACG TERM 2352 2501432 - 2501387 - T 100 -25.7 -3.02986 | gap 1, opp_overlap 2501387, overlap 2501384 CATGCATAAAAAGAC CCTCAAGCGCCTCGCAT-GAAC CAC GTTCGATGCGAGGCGCGTGAGG TTCAATGCAATGACG RHE_CH02390 2502624 - 2501434 - | hypothetical protein TERM 2353 2501874 - 2501862 - G 74 -5.5 -4.46233 | overlap 2501863 2501871 CGAAGCGGAAATAAA GCCAC CAC ATGGC GACGGTGCCAACGAA TERM 2354 2502003 - 2501989 - G 71 -11.4 -3.4878 | GCAGATGATAACGAA GAGCGC GCA GCGCTC GGCCATATGCGCACC TERM 2355 2502457 - 2502482 + g 84 -16.9 -2.78384 | gap 1, opp_overlap 2502441 GGCGAAGGTCAGCAG CGCCGCTTCGGC GGC GCCG-AGCGGCG TATAATGGGCGGCGA RHE_CH02391 2503036 - 2502653 - | hypothetical protein TERM 2356 2503174 - 2503162 - H 75 -6.2 -4.56597 | CTGTCGCTTGAAAAA CGGG GCCAT CCCG CTTGGCGCGCTTCAA moaA 2503210 - 2504256 + | molybdenum cofactor biosynthesis protein A RHE_CH02393 2504673 - 2504377 - | hypothetical protein RHE_CH02394 2504878 - 2505144 + | putative iron ABC transporter, ATP-binding protein RHE_CH02395 2506116 - 2505166 - | transcriptional regulator protein TERM 2357 2505547 - 2505558 + g 71 -5.8 -4.28375 | GACGAAGGGGTCGGC CTGC ATCA GCAG TTTTGCCTCTCTTGA TERM 2358 2506003 - 2506029 + g 74 -13 -3.34962 | overlap 2506005 TTTGAGCATGCGCGA TACCGTCGCCTG CGA CAGGCGAAGGTG TTGTGCGATCTCCGC TERM 2359 2506005 - 2506027 + g 76 -13.4 -3.24365 | overlap 2506003 TGAGCATGCGCGATA CCGTCGCCTG CGA CAGGCGAAGG TGTTGTGCGATCTCC glpKch1 2507604 - 2506138 - | glycerol kinase protein TERM 2360 2507187 - 2507135 - G 76 -13.5 -3.1364 | gap 2, opp_overlap 2507175 CAGTGAATGAGCCAA CTG-TCGACC-GTTCCCAGCCGCAC CGATC GCCCGGCCGGGATCCGGTCGAGCAG CCATCGGAATTTCGA tktA 2508629 - 2507673 - | transketolase C-terminal subunit protein TERM 2361 2508384 - 2508372 - G 76 -10.5 -3.91897 | CCGGCCAGTGAGAAA CGGCG CGG CGCCG CACACGAAGGGCAGC tktB 2509342 - 2508629 - | transketolase N-terminal subunit protein rbsCch4 2509653 - 2510633 + | ribose ABC transporter, permease protein rbsBch3 2510750 - 2511679 + | ribose ABC transporter, substrate-binding protein TERM 2362 2512580 - 2512604 + G 72 -13.5 -2.71712 | overlap 2512579 CGGACTGGTCGGCGC CGGCCGCACCG AAC TGGTGCGGGCG ATTTCCGGAGCAGAC rbsAch3 2511708 - 2513186 + | ribose ABC transporter, ATP-binding protein RHE_CH02402 2513209 - 2513997 + | short chain dehydrogenase TERM 2363 2514263 - 2514249 - g 78 -2.8 -5.07652 | GCTTCGAAAATAAAA CGGT CGTCATC ACCG GCGCCAGCCGCGGCA TERM 2364 2514954 - 2514897 - g 77 -14.8 -2.84051 | gap 1, opp_overlap 2514917, overlap 2514896 2514916 GCATTCCGATGAAAC GCGCCGGCACCGGCGAAGA-TGTGGCC GGCCT GGTCACTTTCCTCGCCAGCGACGACGC CGCCTACATCACCGG RHE_CH02403 2514227 - 2515009 + | short chain dehydrogenase protein RHE_CH02404 2516080 - 2515313 - | short chain dehydrogenase RHE_CH02405 2516434 - 2517306 + | hypothetical protein mobA 2517409 - 2517945 + | molybdopterin-guanine dinucleotide biosynthesis protein mobB 2517942 - 2518460 + | molybdopterin-guanine dinucleotide biosynthesis protein TERM 2365 2519940 - 2519900 - T 74 -10.3 -3.58533 | gap 1 CGAGAACCTCGGAAA GCCTGGCTGC-GGCCGGA TTCCGC TCCGGCCCGCCGCCCCGC GTGGTGAGCACGATA TERM 2366 2520834 - 2520798 - T 79 -12.1 -3.69605 | opp_overlap 2520797, overlap 2520779 2520794 TTCATCGAAAATGAA GGCCGCAGCTTTCTCTC CCC GCGCGATCGCTGCGGCC ATGAATTGAAACGAA TERM 2367 2521053 - 2521036 - T 75 -9.9 -3.76373 | GTCTGAATAGTGAAA TCGTGGT AACC ACCACGA AAGGCTTGCCCACGA TERM 2368 2521500 - 2521520 + T 75 -13.3 -2.62184 | overlap 2521481 CTCCGGCCCGCAGTT CGCTTTCGG TTT CCGAGAGCG TGATGTAGAGCCCGC RHE_CH02410 2522592 - 2521957 - | maleylpyruvate isomerase protein RHE_CH02411 2523230 - 2522814 - | stress-induced OsmC-like protein RHE_CH02412 2524731 - 2523409 - | two-component sensor histidine kinase protein RHE_CH02413 2525468 - 2524728 - | two-component response regulator protein RHE_CH02414 2526635 - 2525583 - | epoxide hydrolase protein TERM 2369 2526798 - 2526830 + H 74 -6.9 -4.46609 | overlap 2526785 2526800 TCCGGCGGGCTATCG CAGTTTTCGCCGCAG CCT CTGTGGAGAAGGCAG TTTGTATTCTTTTGT TERM 2370 2528051 - 2528039 - g 75 -4.1 -4.77165 | CCTTTGAGAAGAAAA TCGAC AAC GTCAA GAAGGCCATCGGCGA RHE_CH02415 2526832 - 2528769 + | putative cytochrome biogenesis protein RHE_CH02416 2528824 - 2529582 + | putative hydrolase protein TERM 2371 2529745 - 2529696 - T 84 -13.8 -3.57144 | gap 2, opp_overlap 2529702 2529703, overlap 2529702 2529706 TGCCCCAGCCGCAAA GCAAAAGCCAGATGCCCCTCTCCA CGAA TGGAGAGGGGCA-C-AGCATTTAC CGGTTGGCTGCGACT TERM 2372 2529739 - 2529702 - T 95 -13.6 -4.55128 | gap 2, opp_overlap 2529702 2529703, overlap 2529696 2529706 AGCCGCAAAGCAAAA GCCAGATGCCCCTCTCCA CGAA TGGAGAGGGGCA-C-AGC ATTTACCGGTTGGCT TERM 2373 2529736 - 2529706 - T 86 -16.3 -2.82666 | gap 1, opp_overlap 2529703 2529702, overlap 2529702 2529696 GCAAAGCAAAAGCCA GATGCCCCTCTCCA CGAA TGGAGAGGGGCA-C AGCATTTACCGGTTG RHE_CH02417 2531958 - 2529742 - | OmpA family membrane protein TERM 2374 2531448 - 2531466 + g 70 -12.4 -3.15861 | overlap 2531442 GCTGTTCAGGCTCCG GCTGAGCC TCC GGCTCGGC TTGCTCAGCCTGCTG TERM 2375 2532035 - 2532065 + H 71 -6.7 -4.30933 | opp_overlap 2532036, overlap 2532031 2532036 TCGCAATGAGGCGAA ACGGCGAATTGGC AAAGC GCCAAACCGCCGA TTTGTTCCGTTTCTA TERM 2376 2532064 - 2532036 - H 81 -13.1 -3.63895 | opp_overlap 2532035 2532031 2532036 CGCAATGAGGCGAAA CGGCGAATTGGCA AAG CGCCAAACCGCCG ATTTGTTCCGTTTCT RHE_CH02418 2532289 - 2533062 + | amino acid ABC transporter substrate-binding protein TERM 2377 2533116 - 2533092 - f 71 -11.5 -3.20723 | opp_overlap 2533092 GGCCGATCAAGCGAA TGGCGGAAG GCTTGCT CTTCCGCCA TTTTTGTTTGACAAA TERM 2378 2533092 - 2533116 + F 100 -12.2 -5.27335 | opp_overlap 2533092 GGCCGATCAAGCGAA TGGCGGAAGG CTTGC TCTTCCGCCA TTTTTGTTTGACAAA TERM 2379 2533159 - 2533148 - f 77 -7.2 -4.4261 | GTGGCAAGATCAAAA CGGC AAAA GCCG TGAGGGGAATTCTCG TERM 2380 2533712 - 2533737 + G 70 -10.3 -3.65046 | GCATCGCGGCCGCAC GCTGCGGCTCG TCAT CCTGCCGCAGC TTGTTCGCATCGCCC RHE_CH02419 2533176 - 2533982 + | amino acid ABC transporter permease TERM 2381 2534379 - 2534395 + G 72 -4.3 -4.56597 | overlap 2534372 2534369 GCCCGCAGCTGGAAG CCGTCGG CAT CTGGTGG TTTTTCCGCGAGGCC RHE_CH02420 2533979 - 2534809 + | amino acid ABC transporter permease RHE_CH02421 2535020 - 2535286 + | putative phosphoribosylanthranilate isomerase subunit Usg protein RHE_CH02422 2536012 - 2535287 - | hypothetical protein RHE_CH02423 2536127 - 2536945 + | putative methyltransferase protein gstch9 2537048 - 2537734 + | glutathione S-transferase protein RHE_CH02425 2537761 - 2538072 + | ArsR family transcriptional regulator RHE_CH02426 2538069 - 2538545 + | hypothetical protein RHE_CH02427 2539018 - 2538563 - | hypothetical protein RHE_CH02428 2539524 - 2539054 - | hypothetical protein TERM 2382 2539456 - 2539480 + g 100 -11.3 -4.74801 | overlap 2539450 2539455 CAGAAGCTTCGGTGC CGCCCCCGCCG GTT TGGCGGCGGTG TTTTTCGTGACCTTC RHE_CH02429 2539756 - 2539535 - | hypothetical protein RHE_CH02430 2540101 - 2539805 - | hypothetical protein TERM 2383 2540114 - 2540147 + r 73 -8.1 -4.07568 | gap 1, opp_overlap 2540105 CATCAACCACTCCTG GATCAGGTGCG-GCTG GGT CAGCGCCCGCCAGATC TTTTCCGCCGGAAAA RHE_CH02431 2540535 - 2540212 - | ArsR family transcriptional regulator TERM 2384 2540779 - 2540752 - R 100 -22.8 -4.88736 | opp_overlap 2540747 CAGCAGGCAGAAAAA CGCCGGAAGCCG CAGA CGGCTTCCGGCG ATACATGTACTGCAC ssuD 2541981 - 2540806 - | alkanesulfonate monooxygenase protein RHE_CH02433 2542448 - 2543761 + | 3-hydroxyisobutyrate dehydrogenase protein TERM 2385 2544397 - 2544371 - g 71 -5.8 -4.39002 | gap 1 AAAGTCCGGATAAAA CCGCG-CGCTG GATCGG CAGGGACGCGG TCAAGGAACTGAGCG RHE_CH02434 2543836 - 2544441 + | hypothetical protein RHE_CH02435 2545186 - 2545623 + | putative inosine-5`-monophosphate dehydrogenase protein TERM 2386 2547464 - 2547416 - T 76 -6.8 -4.57341 | gap 2, opp_overlap 2547458, overlap 2547404 2547418 AACGCGTGTCAAAAA CA-CTGCAAGGACGG-TCCGGC AGGGAAG ACCGGACCCGTCCCCGTAGCTG ATCGGAGGTCACTCG TERM 2387 2547461 - 2547418 - T 77 -9.6 -3.90048 | gap 1, opp_overlap 2547458, overlap 2547404 2547416 CGCGTGTCAAAAACA CTGCAAGGACGG-TCCGGC AGGGAAG ACCGGACCCGTCCCCGTAG CTGATCGGAGGTCAC ropAch2 2548561 - 2547539 - | porin outer membrane protein TERM 2388 2548834 - 2548802 - R 91 -11.4 -4.47551 | gap 1 AGTGAACGCACAAAA CGGCCTCGCAATGGA AACC TCCATCGC-AAGCCG CAAACGTTAAGCCCC RHE_CH02438 2549740 - 2549252 - | AsnC family transcriptional regulator RHE_CH02439 2550442 - 2549810 - | uracil-DNA glycosylase protein RHE_CH02440 2551004 - 2550447 - | putative succinoglycan biosynthesis protein TERM 2389 2551041 - 2551029 - H 77 -2.7 -5.04249 | opp_overlap 2551040, overlap 2551040 TCCTTAAAAAACAAA TCCTT GGC AAAGA TGGCAAACATCTTCT RHE_CH02441 2551105 - 2552646 + | two-component sensor histidine kinase protein dgkA 2553031 - 2552648 - | diacylglycerol kinase protein TERM 2390 2552924 - 2552913 - G 81 -2.2 -5.243 | opp_overlap 2552923, overlap 2552918 GAAACGACGAAAAAA CCAA GTTC CTGG CGGAAGGCCGCCTCT cobT 2554190 - 2553174 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 2391 2554882 - 2554925 + G 72 -7.2 -4.16279 | opp_overlap 2554875, overlap 2554883 CCGGCAAAGCCCGAT GGCGTGGCCGCTTCGAACGG CCAG CCGAATGAGGCGGCGATGCA TTTTGCGCTCGTCTC cobS 2554363 - 2555145 + | cobalamin synthase RHE_CH02445 2555163 - 2555378 + | hypothetical protein TERM 2392 2555359 - 2555371 + F 79 -10.5 -3.97834 | CAAATCTCCCCAAGC GGCCG GAG CGGCC TTTATGATCCGCTTC RHE_CH02446 2555375 - 2556076 + | hypothetical protein RHE_CH02447 2557374 - 2556091 - | putative multidrug resistance transporter protein TERM 2393 2556280 - 2556250 - G 71 -4.7 -4.41348 | overlap 2556252 2556274 CGCCTCGGAAAGAAA CAGCC-CGGCGATCG AAG CGATCAACGCGGC-G CCGGCGATCGACATG TERM 2394 2556624 - 2556583 - G 78 -12.4 -3.72324 | gap 2, overlap 2556618 CATTCCCATGAAGAA GCC-CAGTTTCG-CGCTCGA TCCG CCGAGCGACGAAACAGCGGC CAGGGATGCGCCGCC TERM 2395 2556895 - 2556864 - G 88 -16.6 -3.35798 | gap 1, opp_overlap 2556878 ACGCTTCATCCAGAA CGCCGCCGAAGCTCG GAC CGAGCATCGGC-GCG ATGGCCCATCCCATG TERM 2396 2557006 - 2556985 - G 71 -11.5 -3.42354 | GAGGGCAACGCAGAA GCAGGCGGC GATC GACGCCTGC ATCACGCGAAACAAC TERM 2397 2557461 - 2557448 - H 93 -5.9 -5.60993 | opp_overlap 2557448, overlap 2557432 CGGGGCACAAAAAAA GCCCC GTCA GGAGC TTGATCTACAGCGCA RHE_CH02448 2557812 - 2558249 + | hypothetical protein TERM 2398 2558597 - 2558625 + F 74 -7.2 -4.32177 | overlap 2558599 GGCATAAGTAACTTT GACGGGCGCTGC GGCCA GCTGCGACCGGC TTTCTTGTGGGGTCA TERM 2399 2559645 - 2559681 + G 83 -14.4 -3.41602 | opp_overlap 2559618, overlap 2559646 TCACTGGTGATGAGG TGGCG-GCGCCGGCGCGT TCA GC-CGCCGGCGCTCGCCC TTATCCTGGAGTCAG TERM 2400 2559646 - 2559680 + G 86 -17.9 -2.64747 | opp_overlap 2559618, overlap 2559645 CACTGGTGATGAGGT GGCG-GCGCCGGCGCGT TCA GC-CGCCGGCGCTCGCC CTTATCCTGGAGTCA RHE_CH02449 2558832 - 2559767 + | LysR family transcriptional regulator RHE_CH02450 2560455 - 2559718 - | short chain dehydrogenase TERM 2401 2559898 - 2559928 + g 70 -11.9 -3.15544 | gap 1, opp_overlap 2559889 2559890 GACAAAGCCCCAGAT CGGCGTATCGACCC ATCC GGG-CGATACGGCG TTGATACGGATGGGA hndJ 2561323 - 2560562 - | multidrug ABC transporter, permease protein TERM 2402 2560802 - 2560772 - G 71 -11 -3.4252 | GTTGATCGAGTAGAA GCTGCCGCCGAGGA AGG TCAGCGGCGGCACC ACCAGCATCGGTATG hndI 2562246 - 2561320 - | multidrug ABC transporter, ATP-binding protein TERM 2403 2562656 - 2562673 + r 100 -9.8 -4.85782 | overlap 2562664 GCCGCGTTCGTCTCA GCCGGC CTCTGC GCCGGC TTTCTTTTTAGGAGG xynA 2564497 - 2562884 - | beta-xylosidase protein RHE_CH02454 2565644 - 2564613 - | oxidoreductase protein TERM 2404 2565278 - 2565300 + g 77 -13.5 -3.36515 | overlap 2565276 CCATGCGCTTCAGGC TCTGGTCGC AGGAA GCGACCAGA TATTTGCGGCTGCCC RHE_CH02455 2567004 - 2565871 - | oxidoreductase protein RHE_CH02456 2567774 - 2567013 - | hypothetical protein manB2 2570272 - 2567813 - | beta-mannosidase protein TERM 2405 2570325 - 2570302 - R 70 -9.5 -3.53811 | opp_overlap 2570313 2570323, overlap 2570303 TTCACGTTCTTGAAA TGGACGGCG CATAGC CGCCGTCCG GCAATTGTCGGTCAT TERM 2406 2570324 - 2570303 - R 73 -13 -2.72144 | opp_overlap 2570313 2570323, overlap 2570302 TCACGTTCTTGAAAT GGACGGCG CATAGC CGCCGTCC GGCAATTGTCGGTCA TERM 2407 2570556 - 2570527 - R 74 -11.3 -3.26649 | ACAGCCCTACAGCAA GCAGGCGGCGCCA TCCC CGGCCCCACCCGC AGAACCTCCGCTAAA RHE_CH02458 2571673 - 2570567 - | sugar ABC transporter, ATP-binding protein TERM 2408 2571303 - 2571313 + g 71 -8.2 -3.95073 | AGGATCTCGGCCGCA CGCG CCA CGCG TTTGTCGATCTCGGC RHE_CH02459 2572508 - 2571681 - | sugar ABC transporter, permease protein RHE_CH02460 2573523 - 2572618 - | sugar ABC transporter, permease protein TERM 2409 2573669 - 2573649 - R 85 -16.9 -2.62263 | overlap 2573617 ATCGTCCGGAGAGGA TCCGGCTCG CAT CGAGCCGGA TCCCAAAGGCAGCGA RHE_CH02461 2574926 - 2573694 - | sugar ABC transporter, substrate-binding protein TERM 2410 2575198 - 2575188 - H 72 -4 -4.84359 | GCAGCTGCAGAAAAA TTCT GCA AGAA TCACCAATTCAACCT RHE_CH02462 2575544 - 2576422 + | LacI family transcription regulator TERM 2411 2576729 - 2576718 - f 82 -5.8 -5.00884 | ATCGCCTTGAAAAAA GCCA AGAT TGGC CGCCATCTCACGAAA RHE_CH02463 2576768 - 2577382 + | hypothetical protein ddlA 2577415 - 2578491 + | D-alanine-D-alanine ligase protein RHE_CH02465 2578495 - 2579034 + | hypothetical protein RHE_CH02466 2579670 - 2579053 - | hypothetical protein TERM 2412 2579359 - 2579323 - G 76 -9.4 -4.10552 | gap 1, overlap 2579325 2579352 GGTGAGGAAATGAAA GAGCGCGCGGTCATGCC ATAC GTCATAACCGCGCTC-C GGGCGCCATACGGTA TERM 2413 2579358 - 2579325 - G 77 -13.1 -3.64541 | overlap 2579323 2579352 TGAGGAAATGAAAGA GCGCGCGGTCATGCC ATAC GTCATAACCGCGCTC CGGGCGCCATACGGT RHE_CH02467 2580072 - 2579764 - | acetyltransferase protein TERM 2414 2579932 - 2579917 - G 74 -4.6 -4.59773 | CTTGAGCGTCAAAAA GCCCCA ATCG CGGAGC GCCAAGGCTGCTTCC TERM 2415 2580394 - 2580431 + r 90 -16.4 -3.31726 | opp_overlap 2580384 2580403, overlap 2580396 2580403 CGACATGCGGCGGCC CGCGAAAAAGCCCGGC GCGACG GCCGGGCTTTTTCGTA TCTTCTCTGCAAACC TERM 2416 2580396 - 2580429 + r 100 -21.2 -3.22618 | opp_overlap 2580384 2580403, overlap 2580394 2580403 ACATGCGGCGGCCCG CGAAAAAGCCCGGC GCGACG GCCGGGCTTTTTCG TATCTTCTCTGCAAA TERM 2417 2580422 - 2580403 - R 95 -12.1 -4.56597 | opp_overlap 2580403 2580396 2580394 GCGGCCCGCGAAAAA GCCCGGC GCGACG GCCGGGC TTTTTCGTATCTTCT TERM 2418 2580403 - 2580422 + r 100 -12.1 -4.88711 | opp_overlap 2580403, overlap 2580396 2580394 GCGGCCCGCGAAAAA GCCCGGC GCGACG GCCGGGC TTTTTCGTATCTTCT gnd 2581898 - 2580447 - | 6-phosphogluconate dehydrogenase TERM 2419 2581774 - 2581792 + g 73 -3 -4.76213 | overlap 2581775 2581776 2581789 TCGGTTTTCTCAGGC GTGCGGTT GAA GACCGCGA TTTTATTGCCTTTCT TERM 2420 2582676 - 2582653 - g 74 -10.2 -3.68351 | opp_overlap 2582652 TCGGCATGAGCGAAA GGCAGCTGCG CCGC CGCTGCTACC ATCATTTCGGCTATG RHE_CH02469 2582127 - 2582894 + | AraC family transcriptional regulator RHE_CH02470 2582964 - 2583362 + | hypothetical protein RHE_CH02471 2583363 - 2583722 + | putative glyoxalase protein TERM 2421 2583827 - 2583787 - T 84 -13.5 -3.54954 | opp_overlap 2583795, overlap 2583785 2583783 2583792 2583795 GTGAAAACAAAGAGA TAGAACAATTCCGTGATTC GAA GAAAAACGGAATTGCTCTA GACTACCGATCCATC TERM 2422 2583822 - 2583792 - T 75 -9.8 -3.75519 | opp_overlap 2583795, overlap 2583787 2583785 2583783 2583795 AACAAAGAGATAGAA CAATTCCGTGATTC GAA GAAAAACGGAATTG CTCTAGACTACCGAT RHE_CH02472 2584540 - 2583830 - | hypothetical protein msbB 2585569 - 2584703 - | lipid A biosynthesis lauroyl acyltransferase RHE_CH02474 2586673 - 2585645 - | alcohol dehydrogenase protein RHE_CH02475 2588016 - 2586730 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2423 2588063 - 2588047 - R 73 -9.4 -3.90744 | opp_overlap 2588044 CCTCTGCGGAAAGAA CGGCGA CGCCC TCGCCG CGCTGGTGTCCGACT RHE_CH02476 2589232 - 2588027 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2424 2588280 - 2588292 + g 71 -9.1 -3.76224 | TCCAGCACTGCCTTT TCGCG GGC CGCGA TTTCATGCATGCCGG RHE_CH02477 2589711 - 2589229 - | hydroxymyristoyl-[acyl carrier] dehydratase transmembrane protein TERM 2425 2589450 - 2589401 - G 72 -8 -4.13767 | gap 3, opp_overlap 2589422 TTGGTGACCGCAAAA CCGGAACCGTCGTGCTCCAGCACCG CCT CGATG-TCGAGCACGGC--TTCCGG CTCGACGAAGGTGCG TERM 2426 2589806 - 2589773 - R 93 -13.7 -3.96298 | overlap 2589774 TAGTTAGGAACGAAA CCGCCCGGCCGCCAT AGTC AGGGCGGCAGGGCGT TCGAAAAAGACTGAT TERM 2427 2589805 - 2589774 - R 89 -17.2 -2.97297 | overlap 2589773 AGTTAGGAACGAAAC CGCCCGGCCGCCAT AGTC AGGGCGGCAGGGCG TTCGAAAAAGACTGA acpXL 2590107 - 2589829 - | acyl carrier protein TERM 2428 2590032 - 2590064 + g 71 -8.4 -3.90586 | CGATCGTATGGCTCT CCGGCGTGATCG TGGCGCGAT CGATCTCGCTGG TTTCTGCAATAATGT fnrNch 2590396 - 2591115 + | Crp/Fnr family transcriptional regulator RHE_CH02480 2591586 - 2591158 - | hypothetical protein cobD 2593009 - 2592029 - | cobalamin biosynthesis protein TERM 2429 2592406 - 2592355 - G 76 -10.7 -3.69323 | gap 2 TCAGCAGGATGGAAA GGC-GCGCGGCCGGCCAG-TTGGCG ACAT CGTCGAGCCGGGCGGCCGCCCAGCC GAAATCGATGTATTT cobC 2594013 - 2593006 - | pyridoxal-phosphate-dependent aminotransferase protein (cobalamin biosynthesis protein) TERM 2430 2593694 - 2593679 - G 74 -2.4 -4.86731 | overlap 2593681 CCGGCCGAAATAAAA GCGCGC GCAT ACTCGC CATAGGTCGGCGCCA cobB 2595317 - 2594010 - | cobyrinic acid a,c-diamide synthase TERM 2431 2595221 - 2595195 - G 74 -13.6 -2.91264 | GGCGGGATCGATATA GTCGGGGCCGGC CTT GCCGGGCGCGAC CGCGATGCCGCGCCG cobA 2596153 - 2595314 - | uroporphyrin-III C-methyltransferase protein iunH2 2597392 - 2596487 - | inosine-uridine preferring nucleoside hydrolase protein TERM 2432 2597524 - 2597558 + rH 95 -13.4 -4.19735 | overlap 2597525 CAGGCTTTCTGCAAC CCGCCGCGGGCGACCG CCG CCGTCGCCTGCGCCGA TTTGATTTTGCCAAG TERM 2433 2597525 - 2597557 + rH 88 -16.9 -3.11359 | overlap 2597524 AGGCTTTCTGCAACC CGCCGCGGGCGACCG CCG CCGTCGCCTGCGCCG ATTTGATTTTGCCAA cobE 2598047 - 2597508 - | precorrin-3B C17-methyltransferase protein TERM 2434 2597748 - 2597733 - GH 74 -10.4 -3.6692 | overlap 2597731 CGGCACCGCAAAATA CCTGGC AACT GCCAGG ATCGCCGCCTCCTCC TERM 2435 2598489 - 2598499 + Gr 72 -2.4 -4.68456 | GATGGCGTCTTCGGC CCCG GCA CCGG TTCTTTTTTCATGCT RHE_CH02487 2598027 - 2598812 + | hypothetical protein cobO 2599472 - 2598837 - | cob(I)yrinic acid a,c-diamide adenosyltransferase cobN 2603305 - 2599472 - | cobaltochelatase TERM 2436 2602792 - 2602811 + g 70 -7.8 -4.08767 | gap 1, overlap 2602792 TGCCCGCCTTCATCA G-CGGCGCT GCC GGCGCCGGC TTTTCCGCCCCTGAA cobW 2604364 - 2603309 - | cobalamin biosynthesis protein cobU 2604880 - 2604371 - | adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase TERM 2437 2605098 - 2605077 - H 71 -11.5 -3.1247 | opp_overlap 2605076 2605072, overlap 2605080 ACTGCGCATAGTTAA TCACGGCGC GGAC GCGCCGTGG CTGGATTCCTGTGAC TERM 2438 2605095 - 2605080 - H 71 -11.8 -2.77182 | opp_overlap 2605076 2605072, overlap 2605077 GCGCATAGTTAATCA CGGCGC GGAC GCGCCG TGGCTGGATTCCTGT TERM 2439 2605264 - 2605277 + H 73 -8.1 -4.07568 | GGCAGCGGGTCTCTT GCCCA GGGT TGGGC TTTTCGCCCGGCACG TERM 2440 2605929 - 2605941 + G 81 -6.9 -4.67982 | overlap 2605917 GATCGCCGCCGCCTG CGCGC GCT GCGTG TTTTCTTCGATCCGG TERM 2441 2606617 - 2606638 + G 71 -10.9 -3.48395 | gap 1 TCGATATCGGCAGCT TCGGCTCGGT CGT ACCG-GCCGA TTATATCCCGGCGCT TERM 2442 2607066 - 2607097 + G 89 -10.8 -4.38712 | ATGAGTTCCCTGTCG GTCGCCGTCATCGG GGGG CCGCTGACGATGAC TTTTCTGGCGCTCGA TERM 2443 2607650 - 2607684 + G 70 -9.8 -3.54459 | opp_overlap 2607651, overlap 2607651 CCGCTACAGCGAAGA ACTCGACCGGCGCCGC CGC GAGGTGTCGGGCGAGA TTTGAGCGAGCTTAA clc 2605899 - 2607689 + | chloride channel protein RHE_CH02493 2608919 - 2607696 - | adenylate cyclase protein TERM 2444 2608041 - 2608053 + g 79 -9.1 -4.1585 | TGCCGAAGCCAATGC GGCCT TGC AGGCC TTTTGCGGATTCTCG cobQ 2610511 - 2609057 - | cobyric acid synthase TERM 2445 2610680 - 2610639 - H 75 -5.7 -4.57837 | opp_overlap 2610647, overlap 2610647 ATATTTTCGCAAAAA TGCGAAAACCGCGCATGGC CTTG GCTCTGCGCGGTTTGCCGA GAACTCAGGCGTCTT TERM 2446 2610672 - 2610647 - H 86 -10.3 -4.31329 | opp_overlap 2610647, overlap 2610639 GCAAAAATGCGAAAA CCGCGCATGGC CTTG GCTCTGCGCGG TTTGCCGAGAACTCA TERM 2447 2610647 - 2610672 + H 79 -12.5 -3.53444 | opp_overlap 2610639 2610647 GCAAAAATGCGAAAA CCGCGCATGGC CTTG GCTCTGCGCGG TTTGCCGAGAACTCA TERM 2448 2610827 - 2610839 + H 88 -2.7 -5.59357 | AAGGCTTACGCAAAC GTTAA TTT TTGAC TTTTTTTGATCTGCT TERM 2449 2611719 - 2611699 - g 82 -3.2 -5.24129 | GCCGCCGACAAAAAA GGCTTCGA ACTTG TCGAGACC GGTAGTCCACAGCGG RHE_CH02495 2611162 - 2612160 + | putative amino acid ABC transporter, substrate-binding protein RHE_CH02496 2612193 - 2612540 + | hypothetical protein TERM 2450 2612528 - 2612552 + T 70 -10.7 -3.29324 | CGAAAAGGCATATCC TCCGGGGCC TTGATCC GGCCTCGGA TTGCCTTTCAGTCCG ecnB 2612741 - 2612586 - | entericidin B signal peptide protein RHE_CH02498 2613739 - 2612840 - | LysR family transcriptional regulator TERM 2451 2613069 - 2613043 - G 70 -10 -3.63627 | opp_overlap 2613049, overlap 2613044 2613046 TGGCGAGATCGGAAA GCACGGCGGCGC GCT GCGCCATCGTGT GGCCGCTGAGATAGG TERM 2452 2613068 - 2613044 - G 72 -13.5 -2.77962 | opp_overlap 2613049, overlap 2613043 2613046 GGCGAGATCGGAAAG CACGGCGGCGC GCT GCGCCATCGTG TGGCCGCTGAGATAG TERM 2453 2613578 - 2613566 - G 78 -6.9 -4.58395 | opp_overlap 2613566 GGCATCGCGCAAAAA CAGCG TCG CGCCG AGTTGTTCCTCGAGC TERM 2454 2613645 - 2613613 - G 81 -14.1 -3.65351 | TGATCTGCATGGAAA CCGCCGAAGGCGTGC GGA ACACCGCTTCGGCGG CGGTGGAAAAATTGC TERM 2455 2613672 - 2613657 - G 74 -4.7 -4.56597 | GCGGCGGTGGAAAAA TTGCC CGTCTC GGCAA TGGCGACGAAGGTGC TERM 2456 2614144 - 2614167 + r 74 -12.4 -3.05935 | opp_overlap 2614137 GCGACACAGGGCCGG GCCGATGGCC TCAA GGCGATCGGC TTACATCCCGCCTAT RHE_CH02499 2614776 - 2614168 - | amino acid efflux LysE family protein RHE_CH02500 2614877 - 2615770 + | chromosome replication initiation inhibitor protein greB 2616488 - 2616006 - | transcription elongation factor regulatory protein RHE_CH02502 2616538 - 2617449 + | putative cation transporter protein RHE_CH02503 2617969 - 2617736 - | hypothetical protein RHE_CH02504 2618058 - 2618588 + | hypothetical protein RHE_CH02505 2618702 - 2619121 + | hypothetical protein TERM 2457 2619147 - 2619180 + G 75 -13.9 -3.05844 | gap 1 GCGCGTGGCAGCCAC GCTCTCCCTCGCCG TATTGCT CGGCGGGGGAG-GC TATTGGGCTGGCACG RHE_CH02506 2619136 - 2620548 + | putative cation efflux system protein RHE_CH02507 2620614 - 2623715 + | cation efflux transporter RHE_CH02508 2624363 - 2623794 - | hypothetical protein RHE_CH02509 2624734 - 2624384 - | hypothetical protein TERM 2458 2625125 - 2625107 - gR 75 -11.6 -3.45054 | GGTTAGAAGTGACAA CGGCCGGC ATC GCGGGCCG AAAGGCGGCGGAGAC RHE_CH02511 2625875 - 2625324 - | putative cytochrome c-like protein RHE_CH02510 2625019 - 2625429 + | hypothetical protein RHE_CH02512 2626300 - 2625968 - | hypothetical protein TERM 2459 2626156 - 2626128 - G 78 -11.7 -3.80573 | CCGATCAGCATGAAA TGCGCAGAGGTCC GGC AGATCTCCGCGCA GACCATCATCAGCTT RHE_CH02513 2626746 - 2626312 - | hypothetical protein TERM 2460 2626339 - 2626357 + g 75 -3.1 -4.87786 | CTTGTCGACCCACTT GGACATC TCCTC GATCTCC TTTTTCTGGGCTTCG RHE_CH02514 2627250 - 2627768 + | hypothetical protein RHE_CH02516 2628370 - 2628735 + | hypothetical protein RHE_CH02517 2628829 - 2629056 + | hypothetical protein TERM 2461 2630507 - 2630478 - g 71 -8.5 -3.91882 | overlap 2630473 TCAGCAGAAACAGAA GTCGCCGCTGCTT TCGA AAGCAGCGGTAGC GGCGGCCATTGAGAA RHE_CH02518 2629053 - 2630519 + | hypothetical protein TERM 2462 2631613 - 2631589 - g 78 -14.3 -3.09492 | overlap 2631591 2631607 GCTGCAACCGGAATA CATGCCCATGG GCA CCAAGGGCATG GCCGACATGGGCGAA RHE_CH02519 2630609 - 2631880 + | putative copper-containing oxidase protein RHE_CH02520 2631915 - 2632394 + | putative copper-containing oxidase protein RHE_CH02521 2632417 - 2632701 + | hypothetical protein TERM 2463 2633376 - 2633391 + T 71 -7.6 -4.07885 | CGAGGAGCGGCGCAT GAACCT GTCG AGGTTC TTTTCACCGACCGTC RHE_CH02523 2634568 - 2634302 - | hypothetical protein RHE_CH02524 2635332 - 2635018 - | hypothetical protein TERM 2464 2635376 - 2635347 - H 70 -11.4 -2.90496 | gap 1, opp_overlap 2635348 2635366, overlap 2635344 TTTCTCCCGAAATGA GGGCGGCGTCTGC CTTAC GCAG-CGCCGCCT TTTTCGCGTCCGCTG TERM 2465 2635348 - 2635375 + H 100 -14.9 -4.62336 | gap 1, opp_overlap 2635347 2635344, overlap 2635366 TTCTCCCGAAATGAG GGCGGCGTCTGC CTTAC GCAG-CGCCGCC TTTTTCGCGTCCGCT RHE_CH02525 2635602 - 2636633 + | AraC family transcriptional regulator TERM 2466 2636741 - 2636721 - T 74 -12.6 -2.78816 | overlap 2636733 TGATGCGGCATCAGA TCCTCGGC ACAAG GCCGAGGA TGACGACCAGTGGTG RHE_CH02526 2638098 - 2636767 - | two-component response regulator protein TERM 2467 2638251 - 2638223 - R 79 -7.3 -4.66833 | overlap 2638224 2638225 TTGTAATTGCAAAAA TTCGATGCCGGTC CCC GACCGGCATCCCC GCCTCACTGGCAATA TERM 2468 2638250 - 2638224 - R 72 -10.8 -3.39618 | overlap 2638223 2638225 TGTAATTGCAAAAAT TCGATGCCGGTC CCC GACCGGCATCCC CGCCTCACTGGCAAT TERM 2469 2638249 - 2638225 - R 78 -14.3 -2.63289 | overlap 2638224 2638223 GTAATTGCAAAAATT CGATGCCGGTC CCC GACCGGCATCC CCGCCTCACTGGCAA rrpX 2639073 - 2638285 - | two-component response regulator protein RHE_CH02528 2639349 - 2639687 + | hypothetical protein RHE_CH02529 2639938 - 2640921 + | hypothetical protein RHE_CH02530 2641236 - 2641544 + | hypothetical protein RHE_CH02531 2641578 - 2641934 + | ArsR family transcriptional regulator TERM 2470 2642323 - 2642303 - g 74 -9 -3.87994 | gap 1, opp_overlap 2642306 AGCGAGGTCGAGAAA GGCC-GTGC GTTC GCACAGGCC GCCCGATTTCTGAAA RHE_CH02532 2641931 - 2642461 + | putative protein-tyrosine-phosphatase protein TERM 2471 2642457 - 2642444 - f 79 -9.5 -4.15565 | opp_overlap 2642453, overlap 2642429 GGCACGACCGCAAAA CCGGC AGGT GCCGG CTGATGGCTTCCTAC RHE_CH02533 2642461 - 2643159 + | glycerol transporter arsC 2643156 - 2643578 + | arsenate reductase protein TERM 2472 2643621 - 2643638 + G 71 -14.1 -2.57564 | overlap 2643620 TCGCCAACCGGATCC GGCGGCC CTGC GGCCGCC CTTCTCCACGCATAA arsH 2643571 - 2644278 + | arsenical resistance protein RHE_CH02536 2644913 - 2644647 - | hypothetical protein RHE_CH02537 2647596 - 2645026 - | mechanosensitive channel protein RHE_CH02538 2648234 - 2647683 - | hypothetical protein TERM 2473 2648158 - 2648126 - G 73 -8.4 -4.09685 | gap 1, overlap 2648131 GCGTATCGCGGAAAA CACCAC-GGATCTCG ACAT CGAGCTCCGGCGGCG GGCGAAACCAAAGGT TERM 2474 2648331 - 2648302 - R 77 -13.5 -3.01791 | AGCTGTTGTGCAATA GGACGAGGGTGCC GTGT GGCCGCCTCGTCC GCACTAAGGTCACTT RHE_CH02539 2649412 - 2648474 - | putative two-component sensor histidine kinase/response regulator hybrid protein RHE_CH02540 2651381 - 2649669 - | transporter protein TERM 2475 2650360 - 2650348 - G 74 -9.1 -3.91911 | TCGACGGCAAGGAAA TGGCG CGT CGCCA CGACCGATAGTACAA TERM 2476 2650863 - 2650853 - G 79 -8.2 -4.26903 | TCGACGCCAGGAAAA CGCG GCG CGCG CCGAAACGATCGCCG TERM 2477 2651319 - 2651302 - G 100 -10.5 -5.4833 | CCAGCCAAGAAAAAA GCCCCGC CGAA GCGAGGC CCAAGTTTGATCCGC RHE_CH02541 2651656 - 2652150 + | MarR family transcriptional regulator TERM 2478 2652328 - 2652295 - g 74 -13.1 -3.35679 | gap 1, opp_overlap 2652293, overlap 2652297 GGCGGTCACCTAGAA CACGGCGAAGATGCCG AGA CGGCA-CTGCGCCGGG AATTGCTGGAAGAAA TERM 2479 2652326 - 2652297 - g 80 -14.3 -3.24924 | gap 1, opp_overlap 2652293, overlap 2652295 CGGTCACCTAGAACA CGGCGAAGATGCCG AGA CGGCA-CTGCGCCG GGAATTGCTGGAAGA RHE_CH02542 2652178 - 2652594 + | MutT/NUDIX family NTP pyrophosphohydrolase cyaCch 2653655 - 2652618 - | adenylate cyclase protein TERM 2480 2653725 - 2653698 - R 81 -13.5 -3.28712 | gap 1, overlap 2653699 GCTGCTGGCTCAGAA GCGGGTCTGCCG CCGAT CGGCAGACCC-C AGCTTGAAGGTGACG TERM 2481 2653725 - 2653699 - R 75 -13.7 -2.57132 | overlap 2653698 CTGCTGGCTCAGAAG CGGGTCTGCCG CCGAT CGGCAGACCCC AGCTTGAAGGTGACG ohr 2654152 - 2653757 - | organic hydroperoxide resistance protein TERM 2482 2654182 - 2654206 + r 85 -12.9 -3.83502 | CGTTGATAGTTTTAC GCGGATCCGAT CAA ATCGGATGCGC TTTAATATCCCGGTC TERM 2483 2654684 - 2654658 - R 79 -14.5 -2.87541 | gap 1, opp_overlap 2654650, overlap 2654655 AGGCATAATCAATGA GGCAGTGGCGCG CTGC CGCG-CACTGCC CTTCGGCTCCGTTCG RHE_CH02546 2656802 - 2655480 - | hypothetical protein TERM 2484 2656889 - 2656870 - R 74 -2.8 -4.87893 | AATTTTAATTAAAAA CGGTGAAT GAAA ACTTACCG GCACAATCTGAAGGC TERM 2485 2656920 - 2656935 + r 87 -11.8 -4.03321 | opp_overlap 2656920 GACAGAAATAGAAAA GGCCGG TCGC CCGGCC TTTGATCTTTGCTGT TERM 2486 2656935 - 2656920 - R 100 -11.8 -4.87328 | opp_overlap 2656920 GACAGAAATAGAAAA GGCCGG TCGC CCGGCC TTTGATCTTTGCTGT mcpV3 2658576 - 2656954 - | methyl-accepting chemotaxis protein TERM 2487 2657887 - 2657926 + g 72 -13.7 -2.70932 | gap 3, overlap 2657891 2657893 ACCGAGCGCCTGCAT GGCGCGGCTCTGCCGCTCGG AGG CCGAGCG-CAG-GCT-CGCC TCGTTGCCGCGGCGC TERM 2488 2658540 - 2658508 - G 70 -10.5 -3.5511 | opp_overlap 2658507, overlap 2658506 GTTGATCCAGAAATA GCCATCGGCGCCGTA GCG CATGGCGCCGATCAC GTCCTTGGCGGCCGC RHE_CH02548 2659047 - 2659433 + | acyl-CoA hydrolase protein RHE_CH02549 2659452 - 2660036 + | hypothetical protein TERM 2489 2660150 - 2660170 + T 79 -9.8 -4.08279 | ACCTCTCCTCCCTCA TTCCTGTG ACAAG CACAGGAA TTGTTTCTCAAATCT RHE_CH02550 2661494 - 2660322 - | hypothetical protein TERM 2490 2660528 - 2660586 + g 74 -13.1 -3.28924 | gap 1, opp_overlap 2660546 2660548 TGCGGCCGCCGTTGA TGGCGCCGCCGGCAAGGACAGC-GCA GCCGCCCG TGCCGTGGTCGGTGCCGGCGGAGCCA TTCTGGCGGACCGTA RHE_CH02551 2663016 - 2661505 - | hypothetical protein RHE_CH02552 2664025 - 2663225 - | SAM-dependent methyltransferase protein TERM 2491 2663899 - 2663874 - G 72 -7.5 -4.13767 | gap 1, overlap 2663878 TGCGCTAGCGTAAAA GCCAGGCTGCCG GTC CCGCAGCC-GAC GTCGAGCACGCGATC TERM 2492 2664070 - 2664110 + r 70 -11 -2.97245 | gap 1, opp_overlap 2664064 2664065, overlap 2664065 GATTATGAACGCGCC GCCGACGG-CCGCAAGCGG ATAA TCGCTGGCGGTCCGCCGGA TCTGCTTCTCCCTCA RHE_CH02553 2665058 - 2664177 - | hypothetical protein RHE_CH02554 2665159 - 2666082 + | LysR family transcriptional regulator RHE_CH02555 2666353 - 2666099 - | hypothetical protein RHE_CH02556 2666789 - 2666412 - | response regulator nuoB2 2667488 - 2666928 - | NADH dehydrogenase subunit B RHE_CH02558 2667994 - 2667635 - | hypothetical protein TERM 2493 2668001 - 2668055 + r 75 -13.6 -2.70932 | gap 1 CAATCTCATCTTCGA CCCC-TCCGCCTTGCCGGCCACT ATGCTTGGTC AGTGGCCGGCAAGGCAACTGGGG TAATTCAGACCGCGC RHE_CH02559 2668911 - 2668123 - | hypothetical protein TERM 2494 2669089 - 2669051 - g 74 -14.6 -2.52464 | opp_overlap 2669047 2669047, overlap 2669072 CCCGCGGCCAACGCA GTTGGTCCGCAGGCCAAC GCA GTTGGTCCGTAGACCAAC GCACCGGCTCCGCCC RHE_CH02560 2669023 - 2669964 + | adenylate cyclase protein TERM 2495 2669967 - 2669982 + T 72 -10.4 -3.41878 | opp_overlap 2669969 GGTCAAGCGCTAAGC GACGGC GATT GCCGTC TTCTCAATTCGAAAA RHE_CH02561 2670727 - 2670059 - | hypothetical protein TERM 2496 2670373 - 2670390 + g 76 -5.5 -4.62872 | TAATTTCTCGCTTGC CTGCTGT TACC GCAGCGG TTTTTCGAACTTGCT RHE_CH02562 2671275 - 2670736 - | hypothetical protein TERM 2497 2670937 - 2670885 - G 88 -7.4 -4.89477 | overlap 2670886 2670887 GCCGCAAGAATAAAA GCCTGCCGCACCGTTTCCGCCGGC ATGCG GCCGGCAAGCCAGGCGCGGCAGAA ATCGATCGCCCTCTG TERM 2498 2670936 - 2670886 - G 71 -10.9 -3.52963 | overlap 2670885 2670887 CCGCAAGAATAAAAG CCTGCCGCACCGTTTCCGCCGGC ATGCG GCCGGCAAGCCAGGCGCGGCAGA AATCGATCGCCCTCT TERM 2499 2671047 - 2671060 + g 78 -3.1 -5.00616 | opp_overlap 2671045, overlap 2671045 2671048 TCGCCGGTATCAAGA TCGAT CGAG ATCGG TTTTTTCCAGAAGGC TERM 2500 2671466 - 2671445 - H 75 -11.5 -3.43203 | opp_overlap 2671444 2671440, overlap 2671446 2671448 GCACCATAAGAGTAA TCACGGCGC AGAC GCGCCGTGG CTGGATTCCTGTGAC TERM 2501 2671465 - 2671446 - H 80 -15 -2.6544 | opp_overlap 2671444 2671440, overlap 2671445 2671448 CACCATAAGAGTAAT CACGGCGC AGAC GCGCCGTG GCTGGATTCCTGTGA TERM 2502 2671463 - 2671448 - H 71 -11.8 -2.86181 | opp_overlap 2671444 2671440, overlap 2671446 2671445 CCATAAGAGTAATCA CGGCGC AGAC GCGCCG TGGCTGGATTCCTGT TERM 2503 2671967 - 2671913 - g 73 -12.7 -3.15544 | gap 1, overlap 2671899 2671957 GGCGACGGTGAGCAA GACCGCGCGCGGCGTCTCGATCGGCG GTTC CTCCGATCC-GAAGACGCGCGCTGCC GCTGGCCTCAATCCC TERM 2504 2672203 - 2672183 - g 76 -12.5 -3.41051 | GGACTCGGAGTACAA GCCGGCCGG CGA CCAGCCGAC GGCGATCCGCGATCT TERM 2505 2674078 - 2674063 - g 78 -3.2 -5.00884 | gap 1, overlap 2674067 ACGCGCTCGAAAAAA GCATGCG CGA CGC-CGC CGCCGACCTCGACTT TERM 2506 2674118 - 2674101 - g 74 -4.7 -4.59773 | CTCGACTTCGAAAAA GCCGCCC GCCT GCGCGAC GAAATCAAACGCCTT TERM 2507 2674139 - 2674128 - g 70 -7.2 -4.10552 | CGCGACGAAATCAAA CGCC TTAA GGCG GTGGAACTTGCGGCG uvrB 2671761 - 2674646 + | excinuclease ABC subunit B RHE_CH02564 2674888 - 2675256 + | hypothetical protein RHE_CH02565 2675332 - 2675718 + | acetyltransferase protein TERM 2508 2676517 - 2676527 + T 73 -8.2 -4.08216 | opp_overlap 2676499, overlap 2676507 CAATTCTGGGGCAAG GCCG CCA CGGC TTTTGCCGGAACTGC RHE_CH02566 2677266 - 2676544 - | hypothetical protein RHE_CH02567 2677934 - 2677326 - | hypothetical protein cspA4 2678521 - 2678733 + | cold shock protein TERM 2509 2678760 - 2678781 + F 100 -15.1 -4.55128 | opp_overlap 2678760 CTTTTGCGGCAGGAA CGGCGCTCC GTAA GGGGCGCCG TTTTCGTTTGCGCCT TERM 2510 2678781 - 2678760 - f 75 -12.9 -3.14132 | opp_overlap 2678760 CTTTTGCGGCAGGAA CGGCGCTCC GTAA GGGGCGCCG TTTTCGTTTGCGCCT TERM 2511 2679617 - 2679643 + G 71 -8.6 -3.90744 | GCCTACCAGAATGCG GCGGTGCTTGCC GAT GTCGACCACCGC TTCTTTGGCGCGCCG TERM 2512 2679844 - 2679832 - g 83 -4.8 -5.02074 | CGACGCGGTAAAAAA CGGT GCCGG ACCG GAGGTGCTGGCGGCA RHE_CH02569 2678948 - 2679913 + | tRNA-dihydrouridine synthase A RHE_CH02570 2680996 - 2680040 - | serine protease HtrA/DegQ family protein RHE_CH02571 2681532 - 2682368 + | chloride peroxidase protein TERM 2513 2682370 - 2682415 + T 100 -14.6 -4.56597 | gap 1, opp_overlap 2682395, overlap 2682371 2682412 TCATCAAAGGCTGAT CCGACGTG-CCGCCAGGCGCT AACGA GGCGCCCGGCGGCCACGCCGC TTTTTGGCAAAACGG TERM 2514 2682371 - 2682414 + T 91 -18.1 -3.33744 | gap 1, opp_overlap 2682395, overlap 2682370 2682412 CATCAAAGGCTGATC CGACGTG-CCGCCAGGCGCT AACGA GGCGCCCGGCGGCCACGCCG CTTTTTGGCAAAACG TERM 2515 2682419 - 2682456 + T 71 -8.7 -3.84451 | gap 1, opp_overlap 2682428, overlap 2682412 2682428 CGGCCACGCCGCTTT TTGGC-AAAACGGTTTTA TCA TGAAACCGTTTTCGTCGA TTTGCGTTTAGCGGC TERM 2516 2682428 - 2682446 + T 77 -8.2 -4.33165 | opp_overlap 2682428, overlap 2682412 2682419 CGCTTTTTGGCAAAA CGGTTTTA TCA TGAAACCG TTTTCGTCGATTTGC TERM 2517 2683184 - 2683144 - T 71 -12.1 -2.78712 | gap 1, opp_overlap 2683138, overlap 2683141 CTCTGAATCTAACTA TGTATCGGCTCGAAAATC TATTCC GATTT-CGAGCCGATACG CTAGCCATTTTCGGG RHE_CH02572 2684157 - 2683204 - | hypothetical protein RHE_CH02573 2684460 - 2684972 + | hypothetical protein TERM 2518 2684997 - 2685018 + F 100 -12.3 -4.80882 | CCGAACGCACGGCCA GCCTCGCAT GAAG ATGCGGGGC TTTTTGCTGTCGCGT RHE_CH02574 2685114 - 2685581 + | hypothetical protein TERM 2519 2685757 - 2685722 - T 90 -14.9 -3.57462 | gap 2 CATCCGAGCGCTAAA GACGGACGGAGCAAGGC TGTC GCCT--CTCCGTCCGTC CGATCGGCCCAGCTC RHE_CH02575 2686665 - 2685793 - | hypothetical protein TERM 2520 2685887 - 2685915 + g 73 -8.2 -4.07568 | gap 1 AGCCCAGGTTCGCGG CCGAAG-GCGTCG CAGG CGACGTATTTCGG TTTTCCCCCGAGCCA RHE_CH02576 2688116 - 2686770 - | two-component sensor histidine kinase protein RHE_CH02577 2688787 - 2688116 - | two-component response regulator protein RHE_CH02578 2689809 - 2689288 - | hypothetical protein TERM 2521 2690532 - 2690513 - g 86 -8.6 -4.65895 | gap 1 GCCGCCAGCGAAAAA GCCACGCAC ATC GTGC-TGGC GAAATAACCGAGCCG RHE_CH02579 2689898 - 2690539 + | dihydrofolate reductase protein RHE_CH02580 2690922 - 2690656 - | hypothetical protein TERM 2522 2692801 - 2692743 - R 76 -5.2 -4.82901 | gap 1, opp_overlap 2692751, overlap 2692745 GTGCTGCGAGAAAAA GCTCGACATCGACAGCATCGAAGGACG CCGCGC CGTCAC-CGTTGCCGTCGATCTCGTTC AGCTGAACATCGCCC RHE_CH02582 2693621 - 2692971 - | transcriptional regulator protein RHE_CH02583 2693713 - 2694366 + | putative methyltransferase protein RHE_CH02584 2694690 - 2695502 + | hypothetical protein TERM 2523 2695570 - 2695514 - f 75 -12.8 -3.18274 | opp_overlap 2695527 2695528 GTGAGCGCAATCGAA CGCCAGCTCGGATCGGGCGCCGCAAC CATCC GTGGCAGCGCCCCTTTCCAGCTGCCG GCCGATTGACTATTT RHE_CH02585 2695915 - 2696619 + | hypothetical protein RHE_CH02586 2697040 - 2696663 - | putative transcriptional regulator protein RHE_CH02587 2697173 - 2698012 + | hypothetical protein RHE_CH02589 2700503 - 2701225 + | hypothetical protein RHE_CH02590 2701469 - 2701870 + | hypothetical protein TERM 2524 2701930 - 2701948 + T 70 -3 -4.78107 | GCGCCGAGCCGCCTC GATCGCCG CGA CATCGATC TTTTTCATCGTCATC RHE_CH02591 2702382 - 2701909 - | hypothetical protein RHE_CH02592 2702700 - 2702915 + | hypothetical protein TERM 2525 2703135 - 2703145 + G 76 -8.2 -4.15565 | opp_overlap 2703120 CTGCCGCTGCTCGCG GCCG ATC CGGC TTTTGCGGTCATCGG dapB2 2703105 - 2703851 + | dihydrodipicolinate reductase protein RHE_CH02594 2704691 - 2703885 - | ornithine cyclodeaminase protein TERM 2526 2704676 - 2704664 - G 76 -5.5 -4.66833 | overlap 2704667 CGCCAACGGTAAAAA CGAGA TCG CCTCG GTCAGCAAACGACAC TERM 2527 2704757 - 2704727 - R 75 -13.2 -3.05384 | GGCCCTGGCATGGAA GGCGGTCTCCACCG CAT CGATCGCGACCGCC ATCAACCCGCTATCG RHE_CH02595 2705395 - 2704889 - | acetyltransferase protein TERM 2528 2705243 - 2705227 - G 71 -5.8 -4.29432 | overlap 2705228 GAAAGGCGATGAAAA CCGGCT CGTTC AGCCGA TCGCGCCACTCCTGC RHE_CH02596 2706231 - 2705860 - | hypothetical protein RHE_CH02597 2707193 - 2706372 - | AraC family transcriptional regulator TERM 2529 2706675 - 2706635 - GH 71 -11.7 -3.1634 | overlap 2706627 CGGCAAACGAGGCAA GGTCGAGAGGCTGCAGCGC CCT GCCCCGCAGCGACTCGACG AGATCGCCGGTCGCG RHE_CH02598 2707192 - 2708211 + | hypothetical protein RHE_CH02599 2708656 - 2710071 + | pyridoxal-dependent amino acid decarboxylase protein RHE_CH02600 2710432 - 2710812 + | hypothetical protein RHE_CH02601 2711470 - 2711048 - | hypothetical protein RHE_CH02602 2713471 - 2711888 - | Na+/H+ antiporter protein TERM 2530 2712431 - 2712451 + g 76 -12.5 -3.53012 | overlap 2712432 GACGGTGGCGCCACC GGCGCCCAG CGG CTGGGCGCG TTTGAACCCCAGCGA TERM 2531 2712432 - 2712450 + g 81 -16 -2.71712 | overlap 2712431 ACGGTGGCGCCACCG GCGCCCAG CGG CTGGGCGC GTTTGAACCCCAGCG TERM 2532 2712978 - 2712920 - G 71 -10.9 -3.47322 | gap 2, overlap 2712916 2712921 CGCCAGCACAAGGAA GCT-GGCAGCCGCCTCCACCGCA-CTGAA ACT TCCTGTTGCGGCGGCGGCGACGGCAAAGC GGAAGAGAACCAGAC TERM 2533 2713725 - 2713735 + G 71 -8.2 -3.93236 | opp_overlap 2713708, overlap 2713730 2713731 CCGGTGATGTCGCCA GCCG GAC CGGC TTTGTCGGATTGGTC TERM 2534 2715129 - 2715149 + G 77 -3.9 -4.82901 | overlap 2715130 2715131 CGGACCATTCACCGG TTACCGTTC CGG GAACGGCGG TTTTTCTAACCAGCG kupch2 2713685 - 2715586 + | potassium transporter protein RHE_CH02604 2715709 - 2716314 + | ring-cleaving dioxygenase protein plyA1 2718408 - 2716921 - | polysaccharidase protein TERM 2535 2717796 - 2717747 - G 81 -12.7 -3.70417 | opp_overlap 2717754, overlap 2717741 ACCACAGCATCCAAA GGCCGGATGAGCGCCACCACGCC CTTA GGAGTGGTGGCACCCGTCTGATC GAGGTAATTGCCGCT TERM 2536 2718509 - 2718527 + r 91 -16 -3.61398 | opp_overlap 2718506 GCTGTTACGACAGCC GGCAGGCC ATC GGCCTGCC TTATTCCCAACAAAA TERM 2537 2718555 - 2718543 - R 71 -4.8 -4.64676 | TTATTCCCAACAAAA GCCT AACGG AGGC TGCATCCTGAAGAAT plyA2 2720230 - 2718743 - | polysaccharidase protein RHE_CH02607 2721812 - 2720613 - | hypothetical protein RHE_CH02608 2722986 - 2721847 - | hypothetical protein TERM 2538 2722560 - 2722528 - G 74 -12 -3.53343 | gap 1 AAGCTGCCCGGTAAA GCCGATGCGCTGGCC GATC GACCAGCCC-TCGGC TTCCGCCAGTGCCCT RHE_CH02609 2723684 - 2722983 - | peptide ABC transporter, ATP-binding protein TERM 2539 2723628 - 2723604 - G 76 -9.4 -4.09864 | gap 1 ATCGAGCCCGGAAAA GATCGGAATCG TCTT CG-TTCCGATC CTGAATGACTTCGTG RHE_CH02610 2725117 - 2723765 - | hypothetical protein RHE_CH02611 2726179 - 2725172 - | AraC family transcriptional regulator TERM 2540 2725275 - 2725285 + g 78 -6.8 -4.65895 | ACCTCGAACATCACC TCGG TTA CCGA TTTTTCAGTGGCGGA RHE_CH02612 2726905 - 2726324 - | hypothetical protein TERM 2541 2726622 - 2726602 - G 78 -5.3 -4.70583 | opp_overlap 2726611, overlap 2726603 2726605 GGCAGGAATAGAAAA GCAGAGCCC CGC GGGCTCCAG GCCGTGTTTGCGCCA RHE_CH02613 2727382 - 2727017 - | hypothetical protein coxP 2728126 - 2727407 - | cytochrome-c oxidase subunit III protein coxO 2728851 - 2728138 - | cytochrome-c oxidase subunit III protein coxN 2730626 - 2728848 - | cytochrome-c oxidase subunit I protein TERM 2542 2729612 - 2729602 - G 71 -4.6 -4.44667 | overlap 2729609 GTGGCGAAGAAGAAA CCGA AAG CCGG ATGCATGCCGCTGAC coxM 2731512 - 2730694 - | cytochrome-c oxidase subunit II protein RHE_CH02618 2732057 - 2731656 - | cytochrome-c protein TERM 2543 2731963 - 2731946 - G 73 -8.3 -4.09243 | overlap 2731926 CACATTTCTTGAAAA CGGTGGC ACCG GCCGCCG CATCCCCCTCCTGCG TERM 2544 2732236 - 2732216 - R 84 -13.3 -3.64703 | TGGCCCCGACGCAAA TGCCAGGTC AGA GACCCGGCA AGCACGTGGTGATCT RHE_CH02619 2733203 - 2732280 - | putative metal-dependent hydrolase protein RHE_CH02620 2733922 - 2733359 - | hypothetical protein TERM 2545 2734109 - 2734084 - R 71 -4.5 -4.67353 | overlap 2734085 CCAGTTAGGGAAAAA GGCCGGCGAGC TCAT GCTGGCCGTCG CCTCCTCGCCGCCGC RHE_CH02621 2735407 - 2734127 - | putative metallo-beta-lactamase family protein RHE_CH02622 2735736 - 2735404 - | hypothetical protein RHE_CH02623 2736180 - 2735806 - | lactoylglutathione lyase protein TERM 2546 2735968 - 2735953 - G 71 -6.1 -4.36914 | opp_overlap 2735929 TGCCGCCTGATAAAA GGCTG CGACCT CAGCC CTGTCTCGCACCCGG RHE_CH02624 2736443 - 2736877 + | putative calmodulin-binding protein RHE_CH02625 2737371 - 2736976 - | hypothetical protein ftsZ1 2737688 - 2738710 + | cell division protein FtsZ TERM 2547 2738793 - 2738759 - T 100 -15.8 -3.85698 | overlap 2738781 GGGCTGGCGGATAAA CGTTGCCCCGCC AGTGGAGAATG GGCGGGGCAACG TCGGTACTCGGCCCG RHE_CH02627 2739735 - 2738911 - | putative transcriptional regulator protein RHE_CH02628 2739828 - 2740718 + | putative nucleoside-diphosphate-sugar epimerase dehydratase protein RHE_CH02629 2741200 - 2740991 - | hypothetical protein RHE_CH02630 2741603 - 2741202 - | hypothetical protein TERM 2548 2741458 - 2741441 - G 89 -11.3 -4.31329 | GGAAAAACCGCAAAA GCCGGAA AGTG TTCCGGC AGAAAATATGGAACC TERM 2549 2741782 - 2741752 - H 71 -7.4 -4.11216 | opp_overlap 2741751 2741750 GGGGTATTGCGAAAA GGCGCGCTGTGG GACACCT CCGCGGCACGCC CCTTTCTCGGTCTCT TERM 2550 2741971 - 2742006 + H 75 -12.5 -3.05384 | GCGGCCGCGCGGCGC GCCCTCTGGCAGACC CGCGGC GGCGTGCCGGAGGGC TTCGCTGCCGAGCGC RHE_CH02631 2741995 - 2742543 + | hypothetical protein RHE_CH02632 2742597 - 2742920 + | hypothetical protein RHE_CH02633 2747027 - 2743047 - | putative RTX toxin hemolysin-type protein RHE_CH02634 2748525 - 2746909 - | putative RTX toxin hemolysin-type protein RHE_CH02635 2748830 - 2749330 + | hypothetical protein RHE_CH02636 2749919 - 2749476 - | hypothetical protein RHE_CH02637 2750444 - 2750031 - | hypothetical protein TERM 2551 2750322 - 2750340 + g 75 -11.7 -3.65046 | opp_overlap 2750316 2750317 GGCGAAGAAGGTGGC GGCCTCG CCGCC CGAGGCC TTCTTGCAATCCAGA RHE_CH02638 2751189 - 2750497 - | putative intracellular protease/amidase protein TERM 2552 2752032 - 2752049 + H 75 -6.3 -4.62904 | gap 1 GATCTATCAGGTGCA CCGCG-AT CGC ATCCGCGG TTTTTCGGACTATTT TERM 2553 2752868 - 2752878 + G 71 -4.6 -4.46656 | GCTCTATGCCGTGAA CGCG ATC TGCG TTTTGCTCTTCTACG TERM 2554 2753618 - 2753604 - g 88 -7.8 -4.86621 | overlap 2753606 AGGCGCAAGGAAAAA CTCGCG GCC CGCAAG GCCCGCCTGGAAGTC RHE_CH02640 2752617 - 2753651 + | desaturase protein mocEch 2753648 - 2753959 + | ferredoxin of the Rieseke type protein mocBch1 2754032 - 2754976 + | rhizopine ABC transporter, substrate-binding protein TERM 2555 2754983 - 2755017 + F 77 -12.1 -3.31726 | gap 1, overlap 2754984 2755005 AAGAACTGATCCTCC CCGGCCGGCGTCTCCT CCTC ACGAG-CGCCGGCCGC TCTTCTCTGGAGAAC TERM 2556 2754984 - 2755016 + F 82 -15.6 -2.58822 | gap 1, overlap 2754983 2755005 AGAACTGATCCTCCC CGGCCGGCGTCTCCT CCTC ACGAG-CGCCGGCCG CTCTTCTCTGGAGAA mocFch 2755036 - 2756241 + | ferredoxin reductase protein RHE_CH02644 2756241 - 2757068 + | hypothetical protein RHE_CH02645 2757297 - 2758943 + | putative sensory box/GGDEF family protein TERM 2557 2759219 - 2759203 - g 74 -12.3 -3.53012 | TTCGGTCGCGGCAAA CGAGCTC GTA GAGCTCG CCTTCCGCGCGACAA RHE_CH02646 2759060 - 2759521 + | hypothetical protein RHE_CH02647 2759635 - 2760690 + | menaquinone biosynthesis methyltransferase protein TERM 2558 2761421 - 2761408 - g 79 -8.1 -4.3586 | overlap 2761410 CCAGGGACATGAAAA CGCGA CCCG TCGCG GACGATATCACGCAG TERM 2559 2761470 - 2761480 + G 71 -5.4 -4.49958 | GCCATTACCGGCAAG CTGA TCG TCAG TTTCTTTCATCCGCT RHE_CH02648 2760690 - 2763047 + | putative transcriptional regulator protein RHE_CH02649 2763189 - 2763608 + | hypothetical protein TERM 2560 2763655 - 2763636 - g 71 -5.7 -4.29396 | overlap 2763637 AATCAGCGACGAAAA CTTCCGC GTATGG GCGGAAA AAAACGAGGTGTATT RHE_CH02650 2763616 - 2763954 + | hypothetical protein RHE_CH02651 2764406 - 2765344 + | hypothetical protein RHE_CH02652 2765549 - 2766169 + | hypothetical protein TERM 2561 2766226 - 2766261 + T 90 -5.4 -5.4477 | gap 1, opp_overlap 2766228 CGCACCGAACTACGA GAGCATTTCCGTTTCTC TCT GCGTC-CGGAAATGCTC TTTTTTTGCCAATTT RHE_CH02653 2766553 - 2766299 - | hypothetical protein TERM 2562 2766668 - 2766639 - H 75 -12.8 -3.12351 | opp_overlap 2766639 GCTCCTCACAGGGAA CCAGCGCGCCCA CGGCCT TGGGCACGCAGG TGTTAAGCTTCCTTT RHE_CH02654 2766894 - 2767496 + | hypothetical protein RHE_CH02655 2767790 - 2767515 - | putative insertion sequence transposase protein lacZ1 2770009 - 2768024 - | beta-D-galactosidase protein TERM 2563 2769588 - 2769570 - G 81 -11.6 -3.85698 | overlap 2769571 GCCGTCGCCCAGAAA TCGCCGCC CCA GGCGGCGT TGAGCTTCGCAATCT TERM 2564 2769587 - 2769571 - G 79 -15.1 -2.91276 | overlap 2769570 CCGTCGCCCAGAAAT CGCCGCC CCA GGCGGCG TTGAGCTTCGCAATC RHE_CH02657 2771216 - 2770170 - | sugar ABC transporter, ATP-binding protein RHE_CH02658 2772204 - 2771353 - | sugar ABC transporter, permease protein RHE_CH02659 2773088 - 2772204 - | sugar ABC transporter, permease protein TERM 2565 2773030 - 2773017 - G 75 -3.7 -4.7173 | overlap 2773019 GATGACAGTGAAAAA CAGCG CGAT CGCAG GCGCGATGAGCAAAG TERM 2566 2773239 - 2773219 - R 74 -12.6 -2.80443 | CGATAGGGCAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGTCGAGGGAGA TERM 2567 2773258 - 2773278 + r 86 -18.3 -2.54896 | overlap 2773254 CGTCGAGGGAGAGGC GGGCGTCGC GGG GCGACGCCC TCGGTTCGCTGGCAA TERM 2568 2773385 - 2773365 - R 74 -12.6 -2.80443 | CGATAGGGCAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGTCGAGTGAAG RHE_CH02660 2774714 - 2773440 - | sugar ABC transporter, substrate-binding protein RHE_CH02661 2774954 - 2776120 + | ROK family transcriptional regulator RHE_CH02662 2776347 - 2776613 + | hypothetical protein RHE_CH02663 2776670 - 2777152 + | hypothetical protein RHE_CH02664 2777703 - 2777251 - | hypothetical protein RHE_CH02665 2778740 - 2777877 - | putative transporter, permease protein RHE_CH02666 2778944 - 2780335 + | GntR family transcriptional regulator RHE_CH02667 2780886 - 2780485 - | putative two-component response regulator protein RHE_CH02668 2782639 - 2780897 - | putative two-component sensor histidine kinase protein TERM 2569 2781851 - 2781797 - G 71 -13.8 -2.55 | gap 4, opp_overlap 2781794 2781800, overlap 2781785 CAACAGGGCAAGGCA GCCGAGCCCCGCCGGCGCTATC-TGCTG AAG CAGCATGA-AGC-CCGGCCGGA-TCGGC TGCCACACCAGATAG TERM 2570 2782941 - 2782967 + G 72 -7.2 -4.1822 | overlap 2782942 GATAGGCGAAGAGGT CGTCGGCTGGTG CGA TATCAGCCGGCA TTTCTTCCCGTCCCA RHE_CH02669 2782660 - 2783088 + | putative acetyltransferase protein TERM 2571 2783120 - 2783077 - T 75 -13 -3.09581 | opp_overlap 2783074 2783119, overlap 2783066 2783115 GAAAGCTCCAAGAGA GCCTCATCCTGAGGTGCCCC GCAA GGGGCCTCGAAGGACGAGGC GGGTGCTTTGACGCC RHE_CH02670 2783808 - 2783179 - | hypothetical protein RHE_CH02671 2785056 - 2783836 - | hypothetical protein RHE_CH02672 2785172 - 2785969 + | hypothetical protein TERM 2572 2786069 - 2786105 + G 95 -10 -4.64844 | gap 1, opp_overlap 2786038 2786068 2786089, overlap 2786070 CCGCTGCTGACGAAC CCGCCGGCGAG-CCGGC CAAA GCCGCTCTCGCCGCCGA TTTTCTGTCTCTCGC TERM 2573 2786070 - 2786104 + G 77 -13.5 -3.38183 | gap 1, opp_overlap 2786038 2786068 2786089, overlap 2786069 CGCTGCTGACGAACC CGCCGGCGAG-CCGGC CAAA GCCGCTCTCGCCGCCG ATTTTCTGTCTCTCG RHE_CH02673 2785975 - 2786304 + | hypothetical protein RHE_CH02674 2787404 - 2786397 - | short chain dehydrogenase TERM 2574 2787807 - 2787819 + G 76 -10.5 -3.92542 | overlap 2787784 CGGCCGAGGAGCTCG GCGCC GAT GGCGC TTATTTCCGCGTGCA RHE_CH02675 2787686 - 2788708 + | alkanal monooxygenase-like protein TERM 2575 2788697 - 2788732 + F 70 -10.4 -3.27704 | gap 1, overlap 2788689 2788712 GTCGCTCCCGCGCTC GGCTGGCGCTGAC-GGC GAG GCTTGTTGGCGCGAGCC TTCGATTTGGGCGGT RHE_CH02676 2788977 - 2789852 + | LysR family transcriptional regulator RHE_CH02677 2791053 - 2789815 - | putative efflux transporter protein RHE_CH02678 2791700 - 2791050 - | ArsR family transcriptional regulator RHE_CH02679 2791857 - 2792540 + | putative methyltransferase protein RHE_CH02680 2793333 - 2792521 - | ferrichrome ABC transporter ATP-binding protein RHE_CH02681 2794333 - 2793341 - | ferrichrome ABC transporter permease RHE_CH02682 2795379 - 2794375 - | ferrichrome ABC transporter permease TERM 2576 2794927 - 2794915 - G 74 -9.1 -3.86194 | overlap 2794917 AATCGCGCCGAGAAA CAGCG AGA CGCTG ACGCCGCCGAGCGCA RHE_CH02683 2796367 - 2795399 - | ferrichrome ABC transporter substrate-binding protein TERM 2577 2796254 - 2796277 + g 72 -8 -4.18934 | GACTTCGACGGTGAC GCCGCGGTCG TCGA CGACCGAGAC TTTCTTGCCGTCGTC RHE_CH02684 2797568 - 2796471 - | adenylate cyclase protein TERM 2578 2796747 - 2796709 - G 73 -8.1 -4.08945 | gap 1, overlap 2796713 AGGATTTCGCCAAAA TGCAGGGC-AGCGCCG AAGGGCAG CGGCGCCAGCCCCTCA GCCTCACGGATCCGA TERM 2579 2796892 - 2796872 - G 72 -3.9 -4.62783 | overlap 2796873 CAGTGACGGGAAAAA TCGCCAACA CGC CGTCGCCGA TGAATTTCAGCACCT TERM 2580 2797197 - 2797174 - G 76 -9.5 -4.07568 | opp_overlap 2797157 GGCGCGGCGGCAAAA CGCGCGACC TCCTTC AGCCGCGCG GCTTCATCACGAGAA RHE_CH02685 2798312 - 2798070 - | hypothetical protein TERM 2581 2798290 - 2798266 - G 93 -13.6 -4.21142 | gap 1, opp_overlap 2798265 2798262 ATTTCAACAGATAAA GGCCGG-GCGA AACG TCGCACCGGCC CTCGTTTCTCTGCCT RHE_CH02686 2798627 - 2798319 - | hypothetical protein RHE_CH02687 2799259 - 2798801 - | hypothetical protein TERM 2582 2799204 - 2799188 - G 73 -11.5 -3.62096 | GGTCATCAGCGCAAA CACCGCC GCC GGCGGCG CCGCAAGATGCGCCT TERM 2583 2799567 - 2799538 - H 70 -12.1 -2.55351 | overlap 2799537 2799541 GCCTGTCACAGGAAT CCAGCCACGGCGC GTCC GCGCCGTGAGTGA CTCTCCCGCGCCCGG ribH2 2799989 - 2800423 + | riboflavin synthase subunit beta TERM 2584 2800460 - 2800438 - f 88 -16.3 -3.06969 | opp_overlap 2800438, overlap 2800402 2800426 2800440 GAAGCTAGCGCAACA GACGGCGGG ATGGG CCCGCCGTC TTCTCCACATCGACA TERM 2585 2800438 - 2800460 + F 90 -16.3 -3.31144 | opp_overlap 2800402 2800438 2800426 2800440 GAAGCTAGCGCAACA GACGGCGGG ATGGG CCCGCCGTC TTCTCCACATCGACA TERM 2586 2800458 - 2800440 - f 75 -13.1 -3.08992 | opp_overlap 2800438, overlap 2800402 2800438 2800426 AGCTAGCGCAACAGA CGGCGGG ATGGG CCCGCCG TCTTCTCCACATCGA RHE_CH02689 2800571 - 2801260 + | putative glyoxalase protein TERM 2587 2801239 - 2801254 + T 70 -10.4 -3.35679 | opp_overlap 2801197, overlap 2801245 GGTCAGCGAACAGGC CGGCAG GCAG CTGCCG TTGTAGGTGACAGCG RHE_CH02690 2802182 - 2801406 - | hypothetical protein RHE_CH02691 2803223 - 2802321 - | LysR family transcriptional regulator RHE_CH02692 2803413 - 2804138 + | oxidoreductase protein TERM 2588 2804166 - 2804150 - g 74 -9.3 -3.91911 | overlap 2804134 GTGACCGGAACGAAA GCCCCGG CAG CCGGCGC GGAACAGCGGCTGCA RHE_CH02693 2804132 - 2804620 + | putative translation initiation inhibitor protein RHE_CH02694 2805196 - 2804687 - | hypothetical protein TERM 2589 2807499 - 2807510 + G 75 -4.4 -4.70659 | CTCTCCGGCCGTTCG CGTT CGAC AACG TTTTTCGATGTGCCC RHE_CH02695 2805357 - 2809076 + | putative exported protein, TonB-dependent receptor protein TERM 2590 2809672 - 2809648 - g 81 -13.5 -3.54741 | opp_overlap 2809631 CACCATGCTTGCAAA GGCCTCGGGAG TGG CGCCCGAAGCC CTGCCAGCCGGTCGG cyaK 2809076 - 2811046 + | adenylate cyclase protein RHE_CH02697 2811746 - 2811162 - | TetR family transcriptional regulator TERM 2591 2811985 - 2812005 + G 78 -10.4 -4.00038 | gap 1 GCCATTGCCTTTGCC GGCCAGCCG GGCG CGGC-GGCC TTTCTGCTGGTGATC RHE_CH02698 2811883 - 2812440 + | hypothetical protein RHE_CH02699 2812602 - 2813582 + | putative mRNA-binding protein TERM 2592 2813814 - 2813857 + T 81 -14.4 -3.0782 | CGATGCCGGCGGACC GCCTCGCCCTTCGAGGCCCC TTAC GGGGCACCTCAGGGTGAGGC TCTCTTGACCACTTG RHE_CH02700 2814628 - 2813876 - | putative nucleotidyltransferase protein TERM 2593 2813947 - 2813930 - G 76 -5.5 -4.58283 | gap 1, overlap 2813931 2813932 GAAGCCGTCGAAAAA GCGCCCGC CAT GCAGG-GC AAGCTCCCGATCGGC TERM 2594 2814513 - 2814498 - G 72 -3.9 -4.66953 | TCAATATCCGAAAAA GCAGC CCCCTC GCCGC GCATGATGGACCCGG TERM 2595 2814688 - 2814670 - H 95 -8.1 -5.45652 | gap 1, opp_overlap 2814653 2814670 AGCGGCAACAAAAAA CCCGCTCG TTTC CG-GCGGG TTGGTTCTGCAATGA RHE_CH02701 2814898 - 2815593 + | fumarylpyruvate hydrolase protein RHE_CH02702 2815604 - 2816134 + | acetyltransferase protein RHE_CH02703 2816999 - 2816298 - | putative isoprenylcysteine carboxyl methyltransferase protein TERM 2596 2816943 - 2816913 - G 71 -13.4 -2.52623 | overlap 2816912 2816910 2816921 2816924 GGCGGGCCAGAACAG TGCGACAACCATCA CTG CGACGGTTATCGCA AGTGATCCGAGCGAC TERM 2597 2816974 - 2816987 + g 75 -4.5 -4.68593 | overlap 2816954 GGCGCCGCCGAGCGA CGCAG CTGG CTGTG TTTTTGCGTCATGAC TERM 2598 2817177 - 2817191 + r 71 -11.4 -3.14013 | overlap 2817175 GTGCGTGGTCGGGGA CTGCCG TTG CGGCAG TATTGGATATCGTTA RHE_CH02704 2817817 - 2817215 - | hypothetical protein TERM 2599 2817889 - 2817874 - H 74 -10.4 -3.63515 | opp_overlap 2817870 CTGGATCGGCAATAA GCCGTC GGAT GACGGC TCAACTTCTCCGCCG RHE_CH02705 2817928 - 2818299 + | hypothetical protein RHE_CH02706 2818719 - 2818321 - | hypothetical protein TERM 2600 2818770 - 2818780 + r 73 -8.2 -4.13767 | overlap 2818751 GCGGCAGCGGGCGCG CCGC CTT GCGG TTTTCAGCTCAGGAG RHE_CH02707 2819364 - 2818789 - | hypothetical protein RHE_CH02708 2820637 - 2819522 - | hypothetical protein TERM 2601 2821046 - 2820996 - R 79 -7.5 -4.66163 | gap 1, opp_overlap 2821010 2821011 2821013 2821045 ACTCGGACGGAAAAA GGTGGTCAACAAGTGGAGGGCCGG TTTG CCGGCCCTAT-CTTTTTGATCGCC CTATCGTTGGCAACG TERM 2602 2821010 - 2821034 + r 91 -10 -4.72986 | gap 1, opp_overlap 2820996, overlap 2821011 2821013 AGGTGGTCAACAAGT GG-AGGGCCGG TTTG CCGGCCCTATC TTTTTGATCGCCCTA TERM 2603 2821011 - 2821032 + r 83 -11.5 -3.98256 | opp_overlap 2820996, overlap 2821010 2821013 GGTGGTCAACAAGTG GAGGGCCGG TTTG CCGGCCCTA TCTTTTTGATCGCCC TERM 2604 2821013 - 2821030 + r 86 -14.1 -3.57901 | opp_overlap 2820996, overlap 2821011 2821010 TGGTCAACAAGTGGA GGGCCGG TTTG CCGGCCC TATCTTTTTGATCGC zur 2821475 - 2821077 - | zinc uptake transcriptional regulator znuB 2822284 - 2821472 - | zinc uptake ABC transporter, permease protein znuC 2823215 - 2822277 - | zinc uptake ABC transporter, ATP-binding protein TERM 2605 2823664 - 2823637 - g 70 -7.6 -4.07568 | GGCTTTCCTGGAAAA GCCGCTCGAGGC GCTG GGCTCGAACGCC AGTGTCGTCGAACTC znuA 2823317 - 2824375 + | zinc uptake ABC transporter, substrate-binding protein TERM 2606 2824440 - 2824460 + F 80 -5.4 -5.00616 | gap 1, opp_overlap 2824440 2824438, overlap 2824431 GCTGAAGCGGAAAGA GGCGG-ATG ACCC CGTTCCGCC TTTTTTCGGCACCAG RHE_CH02713 2824514 - 2825719 + | cobalamin synthesis protein TERM 2607 2826032 - 2826017 - f 87 -11.8 -4.19238 | CGCCCAACTCGAAAA GGCGGC CGAA GCCGCC CTCATCCATCCACCA TERM 2608 2826582 - 2826570 - g 74 -10.5 -3.76224 | GCCCGACGGACGAAA GCCGG AGC CCGGC GGATGGAACCGCATC RHE_CH02714 2826373 - 2826756 + | putative glyoxalase/bleomycin resistance-like protein TERM 2609 2827277 - 2827253 - g 70 -7.2 -4.07687 | gap 2 AGCTCGCGCCTAAAA GCCTGGCGCTGC AGC GCAGCG--AGGC CACCTCGCTTGCGGT RHE_CH02715 2826850 - 2828181 + | hemolysin protein chrA 2829603 - 2828182 - | chromate transporter protein RHE_CH02717 2830420 - 2829605 - | putative superoxide dismutase SodM-like protein TERM 2610 2831241 - 2831184 - R 79 -14.4 -2.78813 | gap 2, opp_overlap 2831195, overlap 2831183 GCCGATCGTAAGAAG CCGCGCTAGATGCCTCCTTGGCGTATCC GGCA GGACACGCCAAGGAGG-ATCTAT-GCAT CGAATAGAGTATGGG TERM 2611 2831195 - 2831232 + r 95 -18.5 -2.91582 | opp_overlap 2831183 2831184 GAAGCCGCGCTAGAT GCCTCCTTGGCGTATCC GGCA GGACACGCCAAGGAGGA TCTATGCATCGAATA TERM 2612 2831402 - 2831425 + r 100 -11 -5.46657 | gap 1, opp_overlap 2831402, overlap 2831422 AGACAGATCGAGGAA GGTCGGTGCGA GTT TCGC-CCGGCC TTTTTTCTTGGCCTG RHE_CH02718 2831801 - 2831499 - | hypothetical protein RHE_CH02720 2833519 - 2832608 - | putative phenazine antibiotic biosynthesis protein RHE_CH02721 2834339 - 2833584 - | MutT/NUDIX family NTP pyrophosphohydrolase RHE_CH02722 2835463 - 2834354 - | putative endonuclease/exonuclease/phosphatase family protein TERM 2613 2834714 - 2834700 - G 77 -12.8 -3.60151 | TGCTCGAAACGATAA CCGGCG CCG CGCCGG CCAACAACATCGACG afuC2 2836756 - 2835854 - | iron(III) ABC transporter, ATP-binding protein afuB2 2838438 - 2836744 - | iron(III) ABC transporter, permease protein TERM 2614 2837073 - 2837036 - G 100 -14.2 -4.41616 | gap 1, overlap 2837022 AGCCGCCGAAAGAAA CCGGCGCCGGA-AAGAC GGGCT GCCTCCTCCAGCGCCGG ATCGAGCTGGTGGAA TERM 2615 2837356 - 2837343 - G 76 -9.5 -4.10164 | CCACCAGGAGACAAA CGGCG GTGG CGCCG GCAAGCGAGATCGAA TERM 2616 2837397 - 2837381 - G 71 -9.4 -3.79668 | ATCGAATTGACGAAA GCGGTG CGCGT CACCGC CTGCCGGAAGAGGAT TERM 2617 2838160 - 2838145 - G 73 -3.2 -4.77036 | CGGCAGCACGAAAAA GAAGCT GAGC AGCCCC TTGCCGCGAATATCC TERM 2618 2838387 - 2838419 + g 82 -15 -3.33162 | opp_overlap 2838389, overlap 2838389 2838394 CGGTGATGACGACAA AAGGAAACAGCCAG GGCGG CTGGCTGTTTCCTG TTCTGACATAGCCTG TERM 2619 2838417 - 2838389 - G 100 -17.6 -4.4891 | opp_overlap 2838389 2838387 2838394 GTGATGACGACAAAA GGAAACAGCCAG GGCGG CTGGCTGTTTCC TGTTCTGACATAGCC TERM 2620 2838389 - 2838417 + g 89 -17.6 -3.23393 | opp_overlap 2838389, overlap 2838387 2838394 GTGATGACGACAAAA GGAAACAGCCAG GGCGG CTGGCTGTTTCC TGTTCTGACATAGCC TERM 2621 2838394 - 2838412 + g 78 -10.3 -3.97088 | opp_overlap 2838389, overlap 2838389 2838387 GACGACAAAAGGAAA CAGCCAG GGCGG CTGGCTG TTTCCTGTTCTGACA afuA3 2839423 - 2838446 - | iron(III) ABC transporter, substrate-binding protein TERM 2622 2838826 - 2838857 + g 100 -18 -4.07568 | overlap 2838827 2838850 CGACCGACTTCAGCA CGGCGCCATTGCCG CCGG CGGCGATCGCGCCG TTTTCGGCGAGCGAC TERM 2623 2838899 - 2838882 - G 74 -9.1 -3.87994 | AGCGACTTGTAGAAA TCCCAGC CGAG GCCGGGA ACGGCGGCAAGCGTC TERM 2624 2839518 - 2839545 + r 100 -19.8 -3.05596 | CGCTTGCCGGCATTC GGGCCGCGGCAC TTTC GCGCCGCGGCCC TTGGATCGAACGCTA RHE_CH02726 2840325 - 2839558 - | putative hydrolase protein TERM 2625 2839745 - 2839776 + g 81 -15.2 -3.09516 | gap 1, overlap 2839742 2839741 2839774 GGCAGCTTCTCCCAG GCGG-GCTCGCCGGA TTT TTCGGTGAGCGCCGC TTCGGTGATCGGCCG RHE_CH02727 2840517 - 2840987 + | MarR family transcriptional regulator mocA 2841194 - 2842252 + | oxidoreductase protein TERM 2626 2842364 - 2842395 + T 73 -8.6 -4.05033 | opp_overlap 2842369 2842372, overlap 2842365 GAATCCAGCGTAAGA GTCAATCACGGCGC GGAC GCGCCGTGGCTGGA TTTCTGTGACATCCC TERM 2627 2842365 - 2842394 + T 73 -12.1 -3.02698 | opp_overlap 2842369 2842372, overlap 2842364 AATCCAGCGTAAGAG TCAATCACGGCGC GGAC GCGCCGTGGCTGG ATTTCTGTGACATCC TERM 2628 2842390 - 2842369 - T 71 -11.5 -3.19026 | opp_overlap 2842365 2842364, overlap 2842372 CAGCGTAAGAGTCAA TCACGGCGC GGAC GCGCCGTGG CTGGATTTCTGTGAC TERM 2629 2842387 - 2842372 - T 71 -11.8 -2.7898 | opp_overlap 2842365 2842364, overlap 2842369 CGTAAGAGTCAATCA CGGCGC GGAC GCGCCG TGGCTGGATTTCTGT RHE_CH02729 2843698 - 2842478 - | aminotransferase protein TERM 2630 2844682 - 2844654 - g 70 -12.3 -3.20349 | overlap 2844652 2844647 GGTCGAAACCGAATA CACCCGTGCAGCC AGC GGCGGCACCGGCG CTGCAAAATGCGGCG ilvE2 2844079 - 2845179 + | branched-chain amino acid aminotransferase TERM 2631 2845203 - 2845233 + F 77 -13.4 -2.9176 | gap 1, overlap 2845230 CCTTTCACGCGAAGG GCGGCG-CCAACA CTGACA TGTTGGGCGCCGC TCTCTGCCTCGCCTT RHE_CH02731 2845513 - 2845764 + | hypothetical protein RHE_CH02732 2845748 - 2846071 + | hypothetical protein RHE_CH02733 2846061 - 2846648 + | SAM-dependent methyltransferase protein RHE_CH02734 2846918 - 2847355 + | hypothetical protein TERM 2632 2848120 - 2848075 - g 93 -8.2 -4.98255 | gap 1 CTCGAAGCAGAAAAA GGCCGTGCAGCGGTCTGGCAA GTCGA CCGGCAGACCGGTGC-CGCCC GCGTTTTCGCCTCCG RHE_CH02735 2847358 - 2848926 + | putative L-sorbosone dehydrogenase protein RHE_CH02736 2849002 - 2849325 + | hypothetical protein TERM 2633 2849368 - 2849386 + F 81 -3.1 -5.29445 | gap 1 ACCGAGAAAGACAAT CTCGCACA CAAT TG-GCGGG TTTTTCTTCTTCAGC TERM 2634 2849998 - 2849979 - g 75 -2.8 -4.91657 | gap 1, opp_overlap 2849979, overlap 2849981 AATGAAGAAAAGAAA TGCCGGACG GGT CGTC-GGAA TCGATTCCGACCCGC RHE_CH02737 2849752 - 2850495 + | putative SAM-dependent methyltransferase protein RHE_CH02738 2852204 - 2850525 - | hypothetical protein TERM 2635 2852340 - 2852378 + H 71 -8 -3.91897 | opp_overlap 2852341 2852348, overlap 2852345 2852348 GACCTGATCAAAAAA ACAGAAAAGCGGGAACCG CTG CGGTTCCCGCTGGTTAGC TTTGTAGATGCCGCA TERM 2636 2852377 - 2852341 - H 100 -9.3 -5.52986 | opp_overlap 2852340 2852345 2852348, overlap 2852348 ACCTGATCAAAAAAA CAGAAAAGCGGGAACCG CTG CGGTTCCCGCTGGTTAG CTTTGTAGATGCCGC TERM 2637 2852345 - 2852373 + H 78 -13.1 -3.33711 | opp_overlap 2852341 2852348, overlap 2852340 2852348 GATCAAAAAAACAGA AAAGCGGGAACCG CTG CGGTTCCCGCTGG TTAGCTTTGTAGATG TERM 2638 2852370 - 2852348 - H 100 -19.2 -5.11475 | opp_overlap 2852345 2852340 2852348, overlap 2852341 CAAAAAAACAGAAAA GCGGGAACCG CTG CGGTTCCCGC TGGTTAGCTTTGTAG TERM 2639 2852348 - 2852370 + H 93 -19.2 -2.83346 | opp_overlap 2852348 2852341, overlap 2852345 2852340 CAAAAAAACAGAAAA GCGGGAACCG CTG CGGTTCCCGC TGGTTAGCTTTGTAG TERM 2640 2853075 - 2853090 + G 71 -4.6 -4.45485 | CCTATCAGCTGAATT TCGGCG GAAA CACCGA TTTTCTCAATATGCT RHE_CH02739 2852417 - 2853520 + | myo-inositol-1-phosphate synthase protein RHE_CH02740 2853517 - 2854116 + | putative phosphoglycerate mutase protein RHE_CH02741 2854149 - 2855123 + | hypothetical protein RHE_CH02742 2856398 - 2855097 - | hypothetical protein RHE_CH02743 2857575 - 2856514 - | hypothetical protein TERM 2641 2857219 - 2857204 - G 71 -4.6 -4.46212 | overlap 2857206 CCCTTCACCATAAAA CAGCGG ATAC CCGCCA TACCAAGGATGGCGA TERM 2642 2857758 - 2857734 - R 89 -12.9 -4.00348 | opp_overlap 2857737, overlap 2857737 TCGCAATGAATCAAA TAACCCCCAGC TCA GCCAGGGGTTA TCAGCAGTCTGGAGG TERM 2643 2857755 - 2857737 - R 81 -10.2 -4.12043 | opp_overlap 2857737, overlap 2857734 CAATGAATCAAATAA CCCCCAGC TCA GCCAGGGG TTATCAGCAGTCTGG ilvC 2858839 - 2857820 - | ketol-acid reductoisomerase RHE_CH02745 2859546 - 2858890 - | TetR family transcriptional regulator RHE_CH02746 2860061 - 2859543 - | hypothetical protein rtlK 2861845 - 2860214 - | L-ribulokinase protein RHE_CH02748 2862714 - 2861998 - | putative hydrolase protein glpQ 2863446 - 2862718 - | glycerophosphoryl diester phosphodiesterase protein ugpEch1 2864395 - 2863475 - | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 2644 2864009 - 2863960 - G 70 -10.5 -3.56092 | opp_overlap 2863959 2864001 CGACGACGCCGGAAA GGCCGATGATGCCGGCGAGCCAA CGGA CCGGCCCGGAGGCATCGGCGACC GCTTCGTAGGTTGGA TERM 2645 2864203 - 2864225 + g 78 -9.9 -4.08216 | gap 1, opp_overlap 2864186 2864199 GCTGCGAGAACTCGC CCT-GCTGCC AGGC GGCAGCCAGG TTTTCGAAAAAATGC ugpAch1 2865363 - 2864398 - | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 2646 2865149 - 2865135 - G 71 -5.6 -4.26076 | TGAGCCCGACGAAAA TCTGCG TGC CGCCGA AGGGATCGACCTGAA TERM 2647 2865334 - 2865364 + g 91 -16.3 -3.64609 | gap 1, opp_overlap 2865330 CGACAGAAGATCCGG GATGCGAAGGCGCC GGGC GGCGCCTTC-CATC TTTCCCATGGTTCTA ugpBch1 2866474 - 2865377 - | sn-glycerol-3-phosphate ABC transporter, substrate-binding protein TERM 2648 2866321 - 2866311 - G 76 -8.2 -4.1523 | opp_overlap 2866314 2866315 TCGACCAGATAGAAA CCGG CGA CCGG CGCGACGAAATCGTT TERM 2649 2867927 - 2867898 - g 75 -12.1 -3.62046 | overlap 2867899 GCATCCCTTCAACAA GTCGACCGGCCGG CGAA CCGACCGATCGAG GTGAAGCGGCTGACA TERM 2650 2867926 - 2867899 - g 78 -15.6 -2.77013 | overlap 2867898 CATCCCTTCAACAAG TCGACCGGCCGG CGAA CCGACCGATCGA GGTGAAGCGGCTGAC ugpCch1 2866888 - 2867931 + | glycerol-3-phosphate transporter ATP-binding subunit TERM 2651 2867947 - 2867971 + F 71 -12.1 -2.76492 | opp_overlap 2867963 2867964, overlap 2867946 AGCGGCTGACACGGC CTCCGGCGATT GAC AAGCGCCGGGG ATTTGAGATCCATGG RHE_CH02754 2868014 - 2869018 + | DeoR family transcriptional regulator TERM 2652 2869119 - 2869065 - T 83 -9.9 -4.28361 | opp_overlap 2869065 2869100 GCAATTCCAGGAAAA GTGCGAGGTTTTCCCGGGCAAAGCG CGAAC CGCTTTTGCCGGGCAAAGCGCGAAC TGCTTTTGCCGGGAA TERM 2653 2869198 - 2869149 - T 77 -12.3 -3.27704 | gap 1, overlap 2869144 2869151 2869152 ATTGCGTAAATCCAA GAGCTTAGAGCGGTTCTGCGCTTC CGT GAAAAGCTGAACCGCTCTAA-CTA GGACGCCCTGGCGCA TERM 2654 2869196 - 2869151 - T 83 -14.9 -3.20349 | gap 1, overlap 2869149 2869144 2869152 TGCGTAAATCCAAGA GCTTAGAGCGGTTCTGCGCTTC CGT GAAAAGCTGAACCGCTCTAA-C TAGGACGCCCTGGCG TERM 2655 2869196 - 2869152 - T 80 -15.1 -2.51888 | overlap 2869151 2869149 2869144 GCGTAAATCCAAGAG CTTAGAGCGGTTCTGCGCTTC CGT GAAAAGCTGAACCGCTCTAAC TAGGACGCCCTGGCG RHE_CH02755 2870836 - 2869196 - | hypothetical protein TERM 2656 2869893 - 2869871 - G 73 -11.2 -3.62096 | CGTCATGATCGGAAA GCGCCAGCTG ATC CAGCCGGTGC CGAGAGCGTGTCGCG TERM 2657 2870573 - 2870563 - G 91 -3.2 -5.42259 | overlap 2870567 CGATTGCCAAAAAAA GCAA TGC TCGC GCCAGCCTGTCAGCG TERM 2658 2870699 - 2870678 - G 76 -6.5 -4.41548 | gap 1 GTAGATCTGAGAAAA CGGCTGC-TC GCT GATGCCGCCG GAAAGAAGCCAGATG RHE_CH02756 2871936 - 2870878 - | glycosyltransferase TERM 2659 2871008 - 2870978 - G 72 -3.8 -4.58395 | opp_overlap 2870982 2870999, overlap 2870979 CTCATCTCCGAAAAA GCGGCCGGCAGC TCGGTCT GCTCGCTGCCGC GCAGGATGGTCTCGA RHE_CH02757 2872935 - 2872027 - | AraC family transcriptional regulator adh 2873140 - 2874186 + | alcohol dehydrogenase (NADP+) protein TERM 2660 2874198 - 2874217 + T 90 -9.2 -5.00616 | opp_overlap 2874198 CTGAGGATAATGGAA GGCGGTTC GAGA GGGCCGCC TTTTTTAAGCGGCAA TERM 2661 2875864 - 2875840 - T 88 -7.2 -5.03747 | gap 2, opp_overlap 2875830, overlap 2875828 AAAGCGCCGAAAAAA GCGGCTCGTCTC TCA GAG-CGAGC-GC CTCGACCCGGGCAAG ndhch 2878005 - 2876740 - | NADH dehydrogenase protein RHE_CH02761 2878772 - 2878245 - | hypothetical protein RHE_CH02762 2879475 - 2879011 - | AsnC family transcriptional regulator TERM 2662 2879577 - 2879565 - H 74 -7.7 -4.21438 | overlap 2879562 2879574 CATTGGAACAAACAA CGCAA ACA TTGCG CGCCCACATTGCGTC RHE_CH02763 2879630 - 2880349 + | aspartate racemase protein TERM 2663 2880396 - 2880411 + F 73 -5.4 -4.53707 | opp_overlap 2880386 2880396, overlap 2880389 TAAATGCATGACAAG GTCTTC ATGC GGAGAC TTTTGTCAGTTTGTT TERM 2664 2880455 - 2880475 + F 75 -12.6 -2.90075 | AACCTTCTTTCGTCA TGCTCGGG CTTGT CCCGAGCA TCTGCTTCCAGCCGA TERM 2665 2880523 - 2880503 - f 74 -12.6 -2.80443 | CGATATGGCAGCAGA TCCTCGGC ACGAG GCCGAGGA TGATGGCGAGCGAGG RHE_CH02764 2880587 - 2881504 + | MarR family transcriptional regulator TERM 2666 2881969 - 2881913 - g 71 -10.8 -3.53224 | gap 1, opp_overlap 2881903 2881926 GAGGCCGGCCGCAAA GGCTGTCTCGTCGTCG-GCGGCGCCAA TGAC TTCGCCCTGCTCGACGATGAAACGGCC GCCCATGTCGTCACT RHE_CH02765 2881565 - 2882188 + | TetR family transcriptional regulator RHE_CH02766 2882296 - 2883510 + | putative antibiotic resistance permease protein RHE_CH02767 2883923 - 2883507 - | putative transcriptional regulator protein RHE_CH02768 2884046 - 2884954 + | hypothetical protein TERM 2667 2884962 - 2884992 + T 79 -14.1 -2.78798 | overlap 2884962 GCCATTGAGCACTTC GCTTATCCCTGCG CTTGC CGCAGGGATAAGG CTTTGAATGAGAAAT TERM 2668 2884962 - 2884993 + T 84 -13.9 -3.6502 | gap 1, overlap 2884962 GCCATTGAGCACTTC GC-TTATCCCTGCG CTTGC CGCAGGGATAAGGC TTTGAATGAGAAATC pdxJ 2885940 - 2885188 - | pyridoxal phosphate biosynthetic protein PdxJ TERM 2669 2886715 - 2886696 - g 75 -12.2 -3.54741 | opp_overlap 2886689 2886687, overlap 2886711 GACGAGCTTCGCAAA GCCGATTC GCAG GAATCGGC CGAGGCGATGTTTCG TERM 2670 2886793 - 2886817 + G 76 -12.9 -3.53091 | CGCTGCACCGCCAGC TCCAGCAGGTC GGC GACCTCCTGGA TTTCGACGACGGCAT RHE_CH02770 2886372 - 2887064 + | transcriptional regulator protein recD 2888263 - 2887136 - | exodeoxyribonuclease V alpha subunit protein TERM 2671 2887822 - 2887800 - G 77 -14.1 -3.34344 | TGATTGGTGAAGTAA CCGCCGCCG CTAAC CGGCGGCAG CTGGCCGGGATCGCC RHE_CH02772 2889081 - 2888347 - | LysR family transcriptional regulator RHE_CH02773 2889405 - 2889884 + | putative carboxymuconolactone decarboxylase protein RHE_CH02774 2889954 - 2890709 + | hypothetical protein RHE_CH02775 2890776 - 2891192 + | hypothetical protein TERM 2672 2892305 - 2892275 - g 73 -3.3 -4.67982 | overlap 2892276 GCCGACGGAAGAAAA CGCCAAGCCGC-CGA CCG TCACGCCGCTTG-CG CTGATCGAAGCCATT TERM 2673 2892688 - 2892649 - g 89 -12.8 -4.15044 | CTTTGGCCGAAGAAA TCGCCGAAGCCCTCGCCG GCCG CGCCGAACGCTTCCGCGA CGGCGCCGCCCTGCC RHE_CH02776 2891286 - 2892767 + | putative mechanosensitive ion channel protein RHE_CH02777 2893256 - 2892768 - | putative transcriptional regulator protein TERM 2674 2893853 - 2893839 - g 85 -5.6 -5.04385 | opp_overlap 2893841, overlap 2893841 TACACCTTCAAAAAA GACGCC AAG GGCGTT TCCAACTGCAACGGC TERM 2675 2893851 - 2893841 - g 76 -8.2 -4.14633 | opp_overlap 2893841, overlap 2893839 CACCTTCAAAAAAGA CGCC AAG GGCG TTTCCAACTGCAACG RHE_CH02778 2893689 - 2894069 + | hypothetical protein rpoE2 2894053 - 2894601 + | RNA polymerase sigma factor protein (sigma-24) TERM 2676 2895126 - 2895164 + G 74 -14.5 -2.51547 | gap 1, overlap 2895125 2895125 GGCTTCAAGCTGGTC GGCGGCCG-CCTGCTGCC GGTC GACGGCAGGCCGGGCGCC ATGTTCATGTACGAG RHE_CH02780 2894598 - 2895380 + | hypothetical protein RHE_CH02781 2895740 - 2895384 - | hypothetical protein nthB 2896401 - 2895742 - | nitrile hydratase beta subunit protein nthA 2896946 - 2896398 - | nitrile hydratase alpha subunit protein TERM 2677 2896552 - 2896576 + g 73 -3.6 -4.77165 | gap 1, opp_overlap 2896546 ACGAGATAACGCAGC TCCGCCGTC GAATCCCA GACG-CGGA TTTTCTTGTCCGCCG RHE_CH02784 2897032 - 2897313 + | hypothetical protein TERM 2678 2897880 - 2897912 + G 71 -9 -3.75629 | gap 1 GGCCGCAATGCGCAC GGCGGCTCGTCGCTC ATCA GGGCG-CTTGCCGCC TTTCCCTTGGCGCTG TERM 2679 2898259 - 2898232 - g 71 -6.2 -4.30978 | gap 1 CCGAAGGCATCAAAA GCGCCAA-GGCTC AGA GTGCCCTTGCCGC GACTTCAGCAGCAGC RHE_CH02785 2897415 - 2898686 + | putative oxidoreductase protein RHE_CH02786 2898686 - 2899162 + | hypothetical protein RHE_CH02787 2899747 - 2899154 - | amino acid efflux LysE family protein TERM 2680 2899617 - 2899602 - G 75 -3.9 -4.6951 | opp_overlap 2899609, overlap 2899603 AGCAGCGAAAAGAAA CCGGC GCCGAT GCCGA ACATATGCGGGATCG TERM 2681 2900552 - 2900579 + G 76 -13.4 -3.21099 | gap 1, overlap 2900576 CGCGAAGGCGTACCA GGCGA-CGCCCGC CCA GCTGGCGCTCGCC TTCCTGCTCGAACGC RHE_CH02788 2899977 - 2900747 + | putative oxidoreductase protein TERM 2682 2900758 - 2900729 - T 100 -18 -4.8622 | GCCGGTAAGGAAAAA GCCGCTGGAGAT GCTTTG ATCTCCAGCGGC TCGAACTGCGTCACG TERM 2683 2900956 - 2900939 - T 77 -8.4 -4.22927 | CGAGGAACAGACAAA GCGGAG AGGATG CTCCGC GTGGCCCCTCACCCG ilvH 2901644 - 2901072 - | acetolactate synthase 3 regulatory subunit ilvI 2903425 - 2901668 - | acetolactate synthase 3 catalytic subunit TERM 2684 2903541 - 2903527 - H 100 -9.2 -5.60993 | opp_overlap 2903527 TCGGGCACAAAAAAA GGCCCC GGA GGAGCC TGTCATCTAGCGCAT TERM 2685 2905788 - 2905776 - g 78 -6.9 -4.60889 | opp_overlap 2905776 AAGCATCCTGAAAAA GCCGC TGA GCAGC CTTTACAACAAGGAT RHE_CH02791 2903803 - 2905806 + | hypothetical protein dapAch3 2906705 - 2905791 - | dihydrodipicolinate synthase protein miaA 2907885 - 2906992 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2686 2908493 - 2908468 - g 71 -6.1 -4.25104 | gap 1, opp_overlap 2908483 CGGCTTCGACGAAAA CCGCG-CCAACA CGC TGCTGGACGAGG ATGGTATTCTCTCCG serB 2907887 - 2908777 + | phosphoserine phosphatase protein degPch4 2910597 - 2908888 - | serine protease DO-like protein TERM 2687 2910770 - 2910736 - R 90 -16.5 -3.28712 | opp_overlap 2910736 2910743, overlap 2910743 CTTGGCTCTTGACAA TCGAGAAGGGCCGGC GCTGG GCCGACCCTTTTCGA TCTTGGCGGGAACAG TERM 2688 2910736 - 2910770 + r 87 -16.5 -3.01712 | opp_overlap 2910736 2910743, overlap 2910743 CTTGGCTCTTGACAA TCGAGAAGGGCCGGC GCTGG GCCGACCCTTTTCGA TCTTGGCGGGAACAG TERM 2689 2910763 - 2910743 - R 78 -11.8 -3.45054 | opp_overlap 2910743 2910736, overlap 2910736 CTTGACAATCGAGAA GGGCCGGC GCTGG GCCGACCC TTTTCGATCTTGGCG TERM 2690 2910743 - 2910763 + r 83 -9.6 -4.28254 | opp_overlap 2910736 2910743, overlap 2910736 CTTGACAATCGAGAA GGGCCGGC GCTGG GCCGACCC TTTTCGATCTTGGCG hflC 2911756 - 2910797 - | hydrolase serine protease transmembrane subunit C protein TERM 2691 2911451 - 2911435 - G 71 -10.9 -3.53012 | opp_overlap 2911441 2911449 CTCTGTCGCCCGAAA CCGTTTC GCG GAAACGG CGCGCGTCGTTGATA hflK 2912850 - 2911762 - | hydrolase serine protease transmembrane subunit K protein TERM 2692 2912663 - 2912634 - G 100 -14.3 -4.43844 | overlap 2912635 GGATCAGCCAGAAAA CGGCGACGATCGC CACG ACGATCGCCGCCA CGCCACCATTGAAAC TERM 2693 2912662 - 2912635 - G 84 -15.6 -3.25824 | overlap 2912634 GATCAGCCAGAAAAC GGCGACGATCGC CACG ACGATCGCCGCC ACGCCACCATTGAAA folA 2913518 - 2913000 - | dihydrofolate reductase protein thyA 2914326 - 2913532 - | thymidylate synthase TERM 2694 2914169 - 2914152 - G 72 -4.1 -4.56607 | TCAGGAACCATAAAA GCTCG TGGACGAT CGAGC GCAGATGCAGTTTCT RHE_CH02800 2914927 - 2915442 + | hypothetical protein TERM 2695 2915450 - 2915466 + F 83 -7.9 -4.72986 | opp_overlap 2915450, overlap 2915452 AGCAGTGATTTCAAA GCGAGGC TCA GCCTCCC TTTTTCATAAGGATC RHE_CH02801 2915493 - 2915687 + | hypothetical protein RHE_CH02802 2915737 - 2916015 + | hypothetical protein RHE_CH02803 2919782 - 2916072 - | hypothetical protein TERM 2696 2917427 - 2917485 + g 70 -11.7 -3.21747 | gap 2 TGTCGCTATCGACGG CGGCATTGACCTGCAGGCCGAACGGCAAC CCC GTT-CCGGTCTGCG-GCAGGGCTATGCCG TTCATGATGAGATAG TERM 2697 2918465 - 2918437 - G 83 -7.2 -4.57837 | ACATTGGCGGAAAAA CCCGCCTGCCGC AATTG GCGGATGGCCGG GTCAACCGAGCCGGC TERM 2698 2918666 - 2918704 + g 73 -13 -3.17075 | GTTGCACGTCGCGCA GCGTCGTGTCGCCGGCGA CGA TGGCCGGCAGCTTGACGC TTGCCTTGCCAGGCA dld 2921309 - 2919903 - | D-lactate dehydrogenase (cytochrome) protein RHE_CH02805 2922606 - 2921572 - | oxidoreductase protein TERM 2699 2922581 - 2922564 - G 72 -7.7 -4.19238 | gap 1 CGCCGAAGCTTAAAA CCGGCACT CTG AG-GCCGG ATGCGCCGAGATTTC TERM 2700 2923273 - 2923283 + G 79 -8.2 -4.25104 | ATCTCAGCCGCCATT GCCG CAT CGGC TTTTCCTACGCCCGC RHE_CH02806 2922699 - 2923601 + | LysR family transcriptional regulator TERM 2701 2924341 - 2924375 + T 77 -13.5 -3.02144 | gap 1, overlap 2924347 CTCGCGCCTCTGGGT GG-CGACCGACGGCGG CGAG CCGCCGCCGCTCGTCC TCTTCCCCGCAGTCG TERM 2702 2924347 - 2924372 + T 86 -16.9 -2.73875 | gap 1, overlap 2924341 CCTCTGGGTGGCGAC CGA-CGGCGGCG AGC CGCCGCCGCTCG TCCTCTTCCCCGCAG TERM 2703 2924464 - 2924488 + T 81 -14.3 -3.19389 | overlap 2924479 CCTCCTGCGCATCCA GGGCGGCATGA TCA TCGTGCCGCTC TTCCTCGGTGCGTTC RHE_CH02808 2925776 - 2924835 - | AraC family transcriptional regulator TERM 2704 2925559 - 2925515 - G 76 -8.4 -4.21812 | CCGGATGCAAAACAA TCACCTGCCCCGGCAGGCTG AAGCG CCGCTCGCCGCGATAGGTGA AGGTCTGGACGCCGT RHE_CH02809 2925809 - 2926216 + | hypothetical protein TERM 2705 2926261 - 2926236 - T 77 -11.1 -3.60798 | opp_overlap 2926234 2926236 2926239, overlap 2926239 ATCGGCAGAAACGAA GAATGCCAGGC GATG GCCCGGCCTTC TGTTGTCTGAAAGAG ompA 2926949 - 2926284 - | outer membrane lipoprotein flaCch5 2928184 - 2927186 - | flagellin C protein TERM 2706 2927830 - 2927849 + g 77 -13.6 -3.31274 | opp_overlap 2927825, overlap 2927826 ATTCCGAAACGCTGC GCAGCTGC TCCT GCAGCTGC TTGAGTTCTTCGTTG RHE_CH02812 2931610 - 2928455 - | acriflavin resistance efflux transporter TERM 2707 2931580 - 2931553 - G 71 -6.2 -4.25104 | gap 1 GCCGGCGGACGAAAA GCG-CGGTGAAGC TCT GCTTGCCCGACGC TCGGTCCTGAGGCAG RHE_CH02813 2932812 - 2931607 - | HlyD family protein secretion protein TERM 2708 2932577 - 2932591 + g 89 -12.8 -4.13014 | opp_overlap 2932563 ATGGCGCTGTTGCGC CCGCCG CCG CGGCGG TTTTGACCCTGTCCC cyaJ 2933989 - 2933075 - | adenylate cyclase protein RHE_CH02815 2935737 - 2934193 - | hypothetical protein TERM 2709 2935031 - 2935042 + g 70 -7.2 -4.09243 | overlap 2935026 TGCGGAAGGCCGAGC GCGG CGCG CCGC TTTTCCAAGCCTATG RHE_CH02816 2936843 - 2935740 - | hypothetical protein RHE_CH02817 2938811 - 2937027 - | putative serine protein kinase protein TERM 2710 2937894 - 2937865 - G 75 -4.2 -4.72386 | GAAAGGACGGAAAAA CGCGCCAGCA TTTCAAGCGT TGCCGGTGCG CATGGTGCGTCCACG TERM 2711 2939345 - 2939320 - R 81 -14.7 -3.09516 | opp_overlap 2939320 2939315 TCCCGCAGGATGGAA CCGGGCGAACG TCAC CATCCGCCCGG TATAATTCGATCATA RHE_CH02818 2939851 - 2939375 - | hypothetical protein TERM 2712 2940018 - 2940071 + H 78 -14.3 -2.52543 | gap 2, opp_overlap 2940015, overlap 2940036 ACCCCTGCAATAGCG GTGATTCGGGAATGAAAG--CAGAA CATCTT TTCTGGTCTTTCCTTCCCGAATCAC TACATTACGCGCCAT TERM 2713 2940213 - 2940178 - g 93 -19.6 -3.04792 | opp_overlap 2940187 2940188 GCAGCAGCCGGAAGA CCCGGCGCTGGCGGCG GCAT CGCCGCCCGCGCCATG GCGGCGCGCGACGGC TERM 2714 2940698 - 2940687 - g 81 -7.2 -4.41633 | opp_overlap 2940692, overlap 2940684 2940688 CACCTGGAAAAACAA GGGC CTCG GCCC GGCGGATATTCCCGA TERM 2715 2941513 - 2941493 - g 80 -14.7 -3.17794 | overlap 2941491 AACGCATCATCAACA CGCCGAAGC GCG GCCTCGGCG ATACCACGGTGCGTG uvrD2 2940136 - 2942562 + | DNA helicase II protein RHE_CH02820 2943037 - 2942588 - | hypothetical protein TERM 2716 2943004 - 2942978 - G 82 -10.7 -4.05926 | opp_overlap 2942983 2942985, overlap 2942970 2942979 CAAGAAAGGCAGAAA TCGGGGCGGCC GGCAA GGCCGCCCGGC AAGGCCGGCCTCTTT TERM 2717 2943003 - 2942979 - G 78 -14.2 -3.02471 | opp_overlap 2942983 2942985, overlap 2942978 2942970 AAGAAAGGCAGAAAT CGGGGCGGCC GGCAA GGCCGCCCGG CAAGGCCGGCCTCTT pncA 2943192 - 2943818 + | pyrazinamidase/nicotinamidase protein RHE_CH02822 2943906 - 2944571 + | putative pyrimidine reductase protein TERM 2718 2944599 - 2944616 + T 75 -9.1 -4.08557 | opp_overlap 2944598 AGTGAAAGAGCGAAG GCCAGGC TGCT GTCTGGC TTCTTATTTCAAGAC RHE_CH02823 2946212 - 2944620 - | hypothetical protein TERM 2719 2945867 - 2945851 - G 82 -5.8 -4.87318 | TCGAAAACCGAAAAA CTGCCG AACAG CGACAG CAGCATGATGGAAAG RHE_CH02824 2946551 - 2946306 - | hypothetical protein RHE_CH02825 2946684 - 2947415 + | putative branched-chain amino acid permease (azaleucine resistance) protein RHE_CH02826 2947419 - 2947727 + | hypothetical protein RHE_CH02827 2949678 - 2947792 - | aminopeptidase P protein TERM 2720 2950197 - 2950217 + r 100 -18.3 -5.27335 | opp_overlap 2950188, overlap 2950209 GATAGACCGGTCCAA GGCGGTGCC ACT GGCACCGCC TTTTTGTTTGAGCGC prmA 2951340 - 2950462 - | ribosomal protein L11 methyltransferase TERM 2721 2951146 - 2951131 - G 70 -10.4 -3.58343 | CTGAGCATCGGGAAA GGCGCT TTTC AGCGCC GTCTCGACGCGGGAG senC 2952008 - 2951409 - | cytochrome-c oxidase assembly factor protein mcpW 2952392 - 2954356 + | methyl-accepting chemotaxis protein cheW2 2954359 - 2954826 + | chemotaxis signal transduction protein TERM 2722 2954852 - 2954870 + T 100 -9.5 -5.33405 | AAAATGGAATGCGAA GGTCCGG CTCGT CCGGGCC TTTTTGTTTGATGCG TERM 2723 2954935 - 2954913 - T 95 -12.7 -4.58395 | overlap 2954914 2954926 CCGATCTTCGAAAAA CCCCTCCCC ACAAG GGGGAGGGA CTAACCCTGTGACTC TERM 2724 2954934 - 2954914 - T 83 -14 -3.34716 | overlap 2954913 2954926 CGATCTTCGAAAAAC CCCTCCCC ACAAG GGGGAGGG ACTAACCCTGTGACT creA 2955570 - 2955079 - | CreA protein RHE_CH02833 2956240 - 2955650 - | DNA polymerase III, epsilon subunit protein TERM 2725 2956144 - 2956107 - G 76 -6.1 -4.58395 | gap 1 TTCATCCCGGAAAAA CGCAT-GTCGCGCGGCCG GAT CAGCCGCTCCTCGACGCG TGTCACCCTGCCCTC TERM 2726 2956478 - 2956459 - H 79 -10 -4.12188 | gap 1, opp_overlap 2956459 2956458 CGATCATCCCGAAAA CCCTGC-CG AGG CGAGCAGGG GTTTCGAAACTCGGC RHE_CH02834 2956524 - 2957060 + | acetyltransferase protein TERM 2727 2957090 - 2957069 - T 82 -15.9 -2.75183 | overlap 2957066 ACCTTGAGCGAACCA GGCTGACGG CCCG CCGTCAGCC TCTCACCCGCTGATC ligA 2959249 - 2957093 - | NAD-dependent DNA ligase LigA TERM 2728 2957889 - 2957873 - G 82 -11.5 -4.03234 | CGCCCGGCAGATAAA GCCGCCG GTG CAGCGGC GCACCGAATCCATCT RHE_CH02836 2959844 - 2959434 - | hypothetical protein recN 2961541 - 2959868 - | DNA repair protein TERM 2729 2959978 - 2959995 + g 85 -5.5 -5.00884 | overlap 2959984 CCTTCTGCGCCATCG TCGCAAC GCGG GTCGCGA TTTTTTCGGAACCCT TERM 2730 2960923 - 2960944 + g 71 -8.7 -3.88787 | gap 1, overlap 2960923 CGGCGAGTTCCTCTT C-CTCGCCGT CCT GCGGCGAGAG TTTCTCGAGCTCTGA RHE_CH02838 2962416 - 2961547 - | hypothetical protein TERM 2731 2962541 - 2962556 + r 74 -7.5 -4.24123 | TTTGTGGCAGCCGCG GCCGG AAATGC CCGGC TTTTCACCTTCTTGC TERM 2732 2962659 - 2962639 - R 100 -10.4 -5.71712 | opp_overlap 2962637 GGCGACACAAAAAAA CCGCCTCC GGGAA AGAGGCGG CCTGGTCTTGAGAAT lpxC 2963641 - 2962685 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 2733 2963880 - 2963857 - R 93 -10.2 -4.67038 | overlap 2963858 GCTGGAAAACGAAAA TGCCCGGGAC CTGG ATCCCGGGCG TGAACGGTGTCGAAT TERM 2734 2963879 - 2963858 - R 82 -13.7 -3.395 | overlap 2963857 CTGGAAAACGAAAAT GCCCGGGAC CTGG ATCCCGGGC GTGAACGGTGTCGAA ftsZ2 2965633 - 2963903 - | cell division protein FtsZ ftsA 2967021 - 2965690 - | cell division protein ftsQ 2967971 - 2967018 - | cell division protein TERM 2735 2967384 - 2967340 - GR 75 -12.8 -3.05816 | gap 1, overlap 2967328 2967326 2967325 GCATCGTCGAGCGAA GCCGCCGCGGTCTCGGCGTCA CGGC CGACGACGAG-CGGCAGCGAC GAAAACTTGTTGTCG ddl 2968864 - 2967938 - | D-alanine--D-alanine ligase TERM 2736 2968016 - 2967989 - GH 74 -9.2 -3.83169 | gap 1, opp_overlap 2967993 GAGAAACTGACCAAA CGAA-TAGCCGGC ATG ACCGGCCATTTCG GGCACGAGCGAGGTT TERM 2737 2968710 - 2968678 - GH 71 -11.3 -3.15579 | CGAACGGCCCATGAA GCGCATTGAAGACGA CAT CCGGCTTCAATGCGG CAAGCTTTTCAGAAA TERM 2738 2969010 - 2969020 + H 70 -5.4 -4.44277 | AACTGTCGCCCCGAA GCTT CCG AAGC TTTTACCTTTTGCTC TERM 2739 2969418 - 2969386 - g 100 -12.1 -4.55287 | opp_overlap 2969413 2969414, overlap 2969390 2969410 2969413 TGCACGCAGAGAAAA TTTACGACCTTGTGG CTA CCACAAGATCGCAGA CCCCTGCCTTTCCGC TERM 2740 2969414 - 2969390 - g 79 -15.1 -2.82775 | opp_overlap 2969413, overlap 2969386 2969410 2969413 CGCAGAGAAAATTTA CGACCTTGTGG CTA CCACAAGATCG CAGACCCCTGCCTTT RHE_CH02844 2969313 - 2970242 + | putative UDP-glucose 4-epimerase protein murB 2971220 - 2970246 - | UDP-N-acetylenolpyruvoylglucosamine reductase murC 2972632 - 2971217 - | UDP-N-acetylmuramate--L-alanine ligase murG 2973753 - 2972629 - | N-acetylglucosaminyl transferase TERM 2741 2973731 - 2973707 - G 71 -12.8 -3.06696 | TCCGCCGGGAACACA TGGCCGCCGG TCCCC CCGGCGGCAA GCAGCACGATGCCTT TERM 2742 2973777 - 2973813 + r 75 -6 -4.57073 | gap 3, overlap 2973777 ACTCCGCGGGCATGC CGTGCG--GGACGCGGA AGAGAC TCCG-GTCCTGCGCACG TTTTTCCGGGCGATG ftsW 2974914 - 2973760 - | cell division protein murD 2976328 - 2974916 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 2743 2975294 - 2975350 + g 71 -10.8 -3.53224 | gap 1, opp_overlap 2975287 2975288 2975336 2975338, overlap 2975289 2975288 GCTCGAAAGCGCCGG CGCCGCCGCGTCGGCATTCGTCGCC TTCGAATC GTTGACGAA-GACGACGCGGCCTCG TTTGCCCACAGGCTG TERM 2744 2975861 - 2975841 - G 74 -10.3 -3.69395 | opp_overlap 2975850 TCGACGACGTAATAA CGCCCCGCC TTC GGCGGATCG AGCGTCAGCACCGCC TERM 2745 2976051 - 2976025 - G 70 -11.7 -3.13403 | gap 1, overlap 2976023 GCTCGCGCACGAAGA GC-TCGACATCG CCGA CGATGTCGACGC CGGCCGCCCGCGCGA mraY 2977436 - 2976336 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 2746 2976698 - 2976663 - G 88 -16 -3.32647 | overlap 2976683 GTTGAACCAGAGGAA GCCGAGGCCGGCGCCG ATAA CGGCGCCGAGCACGAC GGCAAGCTCACCGGT murF 2978871 - 2977459 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein TERM 2747 2978733 - 2978708 - G 74 -12.5 -3.26932 | overlap 2978703 ACAACGAGAAGCGAA GCGCCGTTGGC CATC GCCATCGACGC ATAGTCATGACCGTC murE 2980415 - 2978895 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 2748 2979707 - 2979692 - G 72 -7.5 -4.21275 | GCAATGTATCGAAAA GCCGC ATCTTG GCGGC CATATAGGCCTCGAC ftsI 2982179 - 2980422 - | cell division penicillin-binding protein TERM 2749 2980678 - 2980690 + g 73 -6.9 -4.25104 | overlap 2980679 CCGTTTACGACCTTG TCGGC CGT GCCGG TTTTGCTGCCGACGG RHE_CH02854 2982649 - 2982179 - | hypothetical protein mraW 2983676 - 2982651 - | S-adenosyl-methyltransferase MraW mraZ 2984323 - 2983694 - | cell division protein MraZ TERM 2750 2984034 - 2984010 - G 72 -2.1 -4.78848 | gap 1 GCCGGAAACACAAAA TCCTGGAAGC AGTAGA GCT-CCTGGA CGTTGCACTGCGCCA RHE_CH02857 2986172 - 2984997 - | sarcosine oxidase protein RHE_CH02858 2987328 - 2986183 - | sarcosine oxidase protein TERM 2751 2986769 - 2986739 - G 73 -11 -3.5936 | opp_overlap 2986731, overlap 2986730 TGGAAATTGCTGAAA GCGCCGGCCGCG ACCAACA CGCGCTCGGCGC TGTAGCATCTGTCGC TERM 2752 2987385 - 2987401 + r 79 -12.3 -3.57462 | overlap 2987392 TATCTCACCTCATCT CGAGGTG GCC CACCTCG TTTCGAGCTGGGATA TERM 2753 2987480 - 2987450 - R 76 -6.9 -4.64766 | gap 2, overlap 2987452 TTCATATCGTAAAAA CAGCGG--CGGAGGA TTT TCCTCCGGTCCGCTC GGCGGCTCAGTCGAG TERM 2754 2987478 - 2987452 - R 77 -9.5 -3.93817 | gap 2, overlap 2987450 CATATCGTAAAAACA GCGG--CGGAGGA TTT TCCTCCGGTCCGC TCGGCGGCTCAGTCG RHE_CH02859 2988110 - 2987487 - | transglycosylase protein RHE_CH02860 2989045 - 2988371 - | N-acetylmuramoyl-L-alanine amidase protein djlA 2989836 - 2989129 - | DnaJ family molecular chaperone pfk 2990227 - 2991438 + | pyrophosphate--fructose-6-phosphate 1-phosphotransferase RHE_CH02863 2991497 - 2992132 + | amino acid efflux LysE family protein TERM 2755 2993043 - 2993015 - g 74 -9.5 -3.88438 | opp_overlap 2993040 GCAGATCAAATACAA CACCGCCAAATCC ATG GGCTATGACGGTG CGCCGGGCGGCCTGT RHE_CH02864 2992278 - 2993219 + | transglycosylase protein TERM 2756 2993277 - 2993253 - T 75 -9.9 -3.78811 | opp_overlap 2993275, overlap 2993255 ACAACCCAATTGAAA CAGCGGTCGTA GCC TACGGCCGCGG CTGAGCCTGCCGTTG TERM 2757 2993275 - 2993255 - T 75 -11.1 -3.47184 | overlap 2993253 AACCCAATTGAAACA GCGGTCGTA GCC TACGGCCGC GGCTGAGCCTGCCGT RHE_CH02865 2994687 - 2993266 - | putative 6-aminohexanoate-dimer hydrolase protein RHE_CH02866 2994881 - 2996125 + | hypothetical protein RHE_CH02867 2996122 - 2996796 + | SAM-dependent methyltransferase protein lyc 2996924 - 2997721 + | glycoside hydrolase protein RHE_CH02869 2997803 - 2999023 + | membrane-bound lytic murein transglycosylase protein TERM 2758 2999209 - 2999220 + G 77 -2.2 -5.06414 | overlap 2999187 CTGCTTGGTCTTATC TGGG GCGG CTCA TTTTTCTTCGCGCGC RHE_CH02870 2999152 - 3000057 + | putative permease protein TERM 2759 3000484 - 3000461 - T 100 -12.5 -4.8622 | opp_overlap 3000461 TCCGCCAACGAAAAA GCGCATGTC CCGCCC GACATGCGC TTTTTCACTTTTGAA TERM 2760 3000461 - 3000484 + T 100 -12.5 -4.87318 | opp_overlap 3000461 TCCGCCAACGAAAAA GCGCATGTC CCGCCC GACATGCGC TTTTTCACTTTTGAA metF 3001414 - 3000512 - | 5,10-methylenetetrahydrofolate reductase protein TERM 2761 3000678 - 3000692 + g 71 -11.4 -3.40403 | TCGGCCGCGACCTTT GCCCGA TCC TCGGGC TTGTCGTCGAAGCCC RHE_CH02872 3002444 - 3001416 - | ArsR family methyltransferase transcriptional regulator TERM 2762 3002561 - 3002579 + r 90 -16 -3.53012 | opp_overlap 3002561 GTCTGACATGAAAAA GCCCCGGT CGA ACCGGGGC TTTCGGAAGCAGAAA TERM 2763 3002579 - 3002561 - R 100 -16 -4.8048 | opp_overlap 3002561 GTCTGACATGAAAAA GCCCCGGT CGA ACCGGGGC TTTCGGAAGCAGAAA RHE_CH02873 3004255 - 3002606 - | putative ABC transporter ATP-binding protein TERM 2764 3003140 - 3003152 + g 71 -6.2 -4.2558 | GCCGATGCGGATCGA GCCG CTATC CGGC TTTTCCTGGCCGGTG RHE_CH02874 3005094 - 3004354 - | ribonuclease TERM 2765 3004380 - 3004400 + g 72 -4 -4.56775 | CCGCATCGACAACGC CCTCGT CACAGCCGA ACGAGG TTTTTCCCGCCCCCT TERM 2766 3004990 - 3004972 - G 78 -10.2 -4.07568 | GTTCGTCTGGCAAAA GGCGGGCT GCC AGCTCGCC GCAAGAATGAAACGG RHE_CH02875 3005318 - 3006247 + | putative lysophospholipase protein RHE_CH02876 3006282 - 3007238 + | putative transporter, permease protein TERM 2767 3007292 - 3007279 - f 79 -3.7 -5.14965 | AGCCTGACGAAAAAA CCGCC TCTT GCCGG CATCCGGGTGATCGA RHE_CH02877 3007345 - 3008457 + | acyl-CoA transferases/L-carnitine dehydratase protein TERM 2768 3009067 - 3009103 + G 79 -9.4 -4.11484 | gap 1 GGCCGATGGTAATCC TCGGCGGCACGCGCTGG GACG CCGATGC-TGTCGCCGA TTTTGCAGGCTTCGC ilvG 3008454 - 3010112 + | acetolactate synthase 2 catalytic subunit TERM 2769 3010128 - 3010104 - T 80 -5.6 -4.87133 | opp_overlap 3010105, overlap 3010105 ATCGCGCAAACAAAA GGCCGGTAAG TTTGC CCCACCGGCT TTGCGAGACGGAACT RHE_CH02879 3010497 - 3010153 - | putative translation initiation inhibitor protein RHE_CH02880 3010908 - 3010570 - | hypothetical protein RHE_CH02881 3011819 - 3010980 - | hypothetical protein TERM 2770 3011492 - 3011529 + g 73 -10.7 -3.57908 | gap 1, overlap 3011475 GCGGTCCCTCGACCG TGGTGATGTCG-ATGTCG GCC CGGCATTCGGCATTGCCA TTCTCATATTTCGTC RHE_CH02882 3012075 - 3013475 + | hypothetical protein TERM 2771 3013528 - 3013505 - T 74 -10.2 -3.64915 | opp_overlap 3013505, overlap 3013499 GGTTACAAACGATAA GGCTGCCGGA TCGC TCCGACGGCC TTTCTGTTTGATGCT TERM 2772 3013505 - 3013528 + T 88 -10.2 -4.37506 | opp_overlap 3013499 3013505 GGTTACAAACGATAA GGCTGCCGGA TCGC TCCGACGGCC TTTCTGTTTGATGCT parA1 3014338 - 3013550 - | chromosome partitioning protein A TERM 2773 3014450 - 3014425 - R 100 -14.7 -5.0925 | opp_overlap 3014422 CTCCAAAATGAAAAA GCCCGGAAGGC AAGA GCTTTCCGGGC CGGTCTGCTGATCCA RHE_CH02884 3015735 - 3014476 - | alcohol dehydrogenase protein RHE_CH02885 3017012 - 3015627 - | aldehyde dehydrogenase glnA3 3018587 - 3017220 - | glutamine synthetase protein RHE_CH02887 3020284 - 3018734 - | amino acid transporter protein RHE_CH02888 3021092 - 3020400 - | putative N-formylglutamate amidohydrolase protein RHE_CH02889 3021274 - 3022215 + | RpiR family transcriptional regulator RHE_CH02890 3022404 - 3023507 + | ABC transporter substrate-binding protein TERM 2774 3023519 - 3023545 + F 100 -15.9 -3.86015 | gap 1, overlap 3023520 GTAATATTCGATCCT G-CCTCCCCGCC TCAG GGCGGGGAGGTC TTTCTCACCCCGATG TERM 2775 3023520 - 3023543 + F 100 -19.6 -3.51934 | overlap 3023519 TAATATTCGATCCTG CCTCCCCGCC TCAG GGCGGGGAGG TCTTTCTCACCCCGA RHE_CH02891 3023579 - 3024472 + | ABC transporter permease RHE_CH02892 3024469 - 3025257 + | ABC transporter permease RHE_CH02893 3025270 - 3026331 + | ABC transporter ATP-binding protein TERM 2776 3026376 - 3026357 - T 79 -7 -4.72272 | opp_overlap 3026358, overlap 3026358 CCCGCTCATGAAAAA GGCGCCGC GAAA ACGGCGCT TTTTTTTATTGCGGC TERM 2777 3026375 - 3026358 - T 72 -10.5 -3.43042 | opp_overlap 3026358, overlap 3026357 CCGCTCATGAAAAAG GCGCCGC GAAA ACGGCGC TTTTTTTTATTGCGG TERM 2778 3026358 - 3026375 + T 100 -9.8 -6.09888 | opp_overlap 3026357 3026358 CCGCTCATGAAAAAG GCGCCG CGAAAA CGGCGC TTTTTTTTATTGCGG RHE_CH02894 3027492 - 3026407 - | sugar ABC transporter, ATP-binding protein RHE_CH02895 3028480 - 3027419 - | oxidoreductase protein TERM 2779 3028147 - 3028192 + gr 88 -13.4 -3.85698 | gap 3 GCCCGGCTTTCTTCG CCGC-GGCGACCACCCGCTCGGC GTC GGCGA-CG-GTGGTCGCCAGTGG TTTCTCCACGAAGAC RHE_CH02896 3029316 - 3028477 - | sugar ABC transporter, permease protein RHE_CH02897 3030273 - 3029326 - | sugar ABC transporter, permease protein TERM 2780 3030454 - 3030401 - R 86 -14.6 -3.56594 | gap 2, opp_overlap 3030444, overlap 3030402 CTAAACGGGCTGAAA GGTCGCTGCGAGTCTCCTTCTCCCCG CAAG CGGGGAGAAGGTGGCCGGCAG-G-CC GGATGAGGGGCTGCA TERM 2781 3030454 - 3030402 - R 81 -14.8 -2.73635 | gap 1, opp_overlap 3030444, overlap 3030401 TAAACGGGCTGAAAG GTCGCTGCGAGTCTCCTTCTCCCCG CAAG CGGGGAGAAGGTGGCCGGCAG-GCC GGATGAGGGGCTGCA RHE_CH02898 3031748 - 3030489 - | sugar ABC transporter, substrate-binding protein TERM 2782 3031767 - 3031784 + H 71 -6.9 -4.2349 | overlap 3031769 CCTCTCCTGTGTTTT GAGCGCC GCAA GGCGCTG TTTTCGATCTGAAAC TERM 2783 3031769 - 3031782 + H 75 -9.5 -3.71913 | overlap 3031767 TCTCCTGTGTTTTGA GCGCC GCAA GGCGC TGTTTTCGATCTGAA RHE_CH02899 3032279 - 3033163 + | putative N-acetylglucosamine kinase protein TERM 2784 3033280 - 3033255 - g 75 -13.9 -3.03124 | CCGCACGCTCGAAGA GGCCGTGCGCG CCGG CACGCTCGGCC ACGGCGATGCGCTGC RHE_CH02900 3033160 - 3033918 + | transcriptional regulator protein TERM 2785 3033958 - 3034008 + T 95 -17.3 -3.41978 | gap 2, opp_overlap 3033962 3033964 3033970, overlap 3033964 3033966 3033970 ACAAATCGAGCCATA TC-A-ACACATGAAGCCGGAAAGTG AAT CACTTTCCGGCTTCATGTATCTAGA TTCATTGCATTATGA TERM 2786 3034002 - 3033962 - T 100 -26.5 -3.28119 | opp_overlap 3033958 3033964 3033966 3033970, overlap 3033964 3033970 ATCGAGCCATATCAA CACATGAAGCCGGAAAGTG AAT CACTTTCCGGCTTCATGTA TCTAGATTCATTGCA TERM 2787 3034000 - 3033964 - T 100 -26.9 -3.20573 | opp_overlap 3033958 3033964 3033966 3033970, overlap 3033962 3033970 CGAGCCATATCAACA CATGAAGCCGGAAAGTG AAT CACTTTCCGGCTTCATG TATCTAGATTCATTG TERM 2788 3033964 - 3034000 + T 100 -26.9 -2.96598 | opp_overlap 3033964 3033962 3033970, overlap 3033958 3033966 3033970 CGAGCCATATCAACA CATGAAGCCGGAAAGTG AAT CACTTTCCGGCTTCATG TATCTAGATTCATTG TERM 2789 3033966 - 3033998 + T 100 -23.7 -3.03006 | opp_overlap 3033964 3033962 3033970, overlap 3033964 3033958 3033970 AGCCATATCAACACA TGAAGCCGGAAAGTG AAT CACTTTCCGGCTTCA TGTATCTAGATTCAT TERM 2790 3033994 - 3033970 - T 100 -18.7 -3.39353 | opp_overlap 3033966 3033964 3033958 3033970, overlap 3033964 3033962 ATATCAACACATGAA GCCGGAAAGTG AAT CACTTTCCGGC TTCATGTATCTAGAT TERM 2791 3033970 - 3033994 + T 95 -18.7 -3.35465 | opp_overlap 3033970 3033964 3033962, overlap 3033966 3033964 3033958 ATATCAACACATGAA GCCGGAAAGTG AAT CACTTTCCGGC TTCATGTATCTAGAT metH 3037853 - 3034038 - | B12-dependent methionine synthase RHE_CH02902 3037981 - 3039240 + | hypothetical protein TERM 2792 3039255 - 3039280 + T 74 -12.5 -2.76815 | overlap 3039254 ACGGCTGTTTCAGCC ACGAGCGCCGG CAGG CCGGTGCTCGG ATTGTTGCGGCAGAT RHE_CH02903 3039799 - 3039305 - | hypothetical protein RHE_CH02904 3040499 - 3039888 - | putative flavin reductase protein RHE_CH02905 3041247 - 3040504 - | hydantoin racemase protein TERM 2793 3040953 - 3040934 - G 76 -11.4 -3.72576 | overlap 3040935 CGCTGCGCCAGGAAA CCCGCCGT GACC ACGGCGGA TTCACAGAGACCGAG TERM 2794 3040952 - 3040935 - G 70 -12.7 -2.83403 | overlap 3040934 GCTGCGCCAGGAAAC CCGCCGT GACC ACGGCGG ATTCACAGAGACCGA RHE_CH02906 3042070 - 3041249 - | spermidine/putrescine ABC transporter permease TERM 2795 3041677 - 3041660 - G 72 -14.1 -2.77701 | overlap 3041657 3041655 AGCCGACGAATACCA GGCGGGC TTCA GCCCGCC CTCCTGAAAGACGAC RHE_CH02907 3042986 - 3042072 - | spermidine/putrescine ABC transporter permease TERM 2796 3042852 - 3042822 - G 72 -11.8 -3.32521 | overlap 3042813 ATCATAGTCCCAGAA GCTGACGACCGCGA TCA TGGCGATCGGCAGC AGGAAGAAGAAGCCG RHE_CH02908 3044548 - 3043250 - | spermidine/putrescine ABC transporter substrate-binding protein RHE_CH02909 3045682 - 3044594 - | spermidine/putrescine ABC transporter ATP-binding protein RHE_CH02910 3045950 - 3046660 + | GntR family transcriptional regulator RHE_CH02911 3046666 - 3047193 + | hypothetical protein TERM 2797 3047319 - 3047272 - T 83 -15.1 -3.14564 | gap 2, opp_overlap 3047316 3047317, overlap 3047280 GGAGGTTCCGACGAA GCGGAAAAGGATCGCAGCTCAAC ATCT GTTG-GCCGCGATCCCCTT-CGC GTCAGTCGCGGTTCT TERM 2798 3047312 - 3047280 - T 100 -15 -4.20696 | gap 1, overlap 3047272 CGACGAAGCGGAAAA GGATCGCAGCTCAAC ATCT GTTG-GCCGCGATCC CCTTCGCGTCAGTCG RHE_CH02912 3047704 - 3047321 - | hypothetical protein TERM 2799 3047990 - 3047977 - H 75 -2.3 -5.03314 | GGGAGGCGGAAAAAA CCCTG AAAT CACGG AACTTTTGCGGCTGT RHE_CH02913 3048283 - 3048522 + | hypothetical protein RHE_CH02914 3049012 - 3049335 + | hypothetical protein TERM 2800 3049635 - 3049577 - gf 73 -12.5 -2.72344 | TCCGATCGTCAAGCA GGGCTTCGAGCGCCAGCT-GCCCTTCG ACTGGAG CGA-GGTCGAGCCGACGCCCGAAGCCT ATGCCATGCTGGTCG cinRch 3049275 - 3050057 + | autoinducer transcriptional regulator protein cinI 3050272 - 3050937 + | N-acyl-L-homoserine lactone (AHL) synthase protein TERM 2801 3051004 - 3051060 + T 71 -11 -3.05343 | gap 1, overlap 3051017 ATGTCCTCGCATCCC GCGACATCGCCACGCAGATAGGGGA TCCCTTCC TCTCCTATCTGC-TTTCGATGGCGC TGTTCACGATCTACG TERM 2802 3051017 - 3051048 + T 77 -11 -3.65529 | overlap 3051004 CCGCGACATCGCCAC GCAGATAGGGGA TCCCTTCC TCTCCTATCTGC TTTCGATGGCGCTGT RHE_CH02917 3051790 - 3051257 - | two-component response regulator protein TERM 2803 3051731 - 3051710 - G 73 -2.9 -4.72272 | opp_overlap 3051715, overlap 3051712 TTTGCCCAGGAAAAA CGCATCATC CACA GATGTTGTG CTGCCCGCTTGTGGC RHE_CH02919 3053078 - 3051864 - | integrase/recombinase protein TERM 2804 3051936 - 3051950 + g 75 -2.8 -4.92783 | ATTCTTGTTCTTTGC CATTGA TTT TCCATG TTTTTCTCCTCGATT TERM 2805 3052668 - 3052678 + g 73 -8.2 -3.98173 | overlap 3052666 CACCAGCTTATCGGC CGCC CCT GGCG TTTCCTTCCGTTTGA RHE_CH02920 3053332 - 3053075 - | hypothetical protein RHE_CH02921 3053552 - 3053334 - | hypothetical protein TERM 2806 3053447 - 3053460 + g 72 -4.5 -4.62783 | overlap 3053434 GGCGAGCGCAGAGAT GGTCG AGCT CGATC TTTTTGCCCTGAGTC RHE_CH02922 3053775 - 3054269 + | hypothetical protein RHE_CH02923 3055435 - 3054572 - | hypothetical protein RHE_CH02924 3056515 - 3055532 - | hypothetical protein TERM 2807 3056098 - 3056086 - G 76 -7.7 -4.26076 | TGATGTCGATGAAAA GACGA GAC TCGTC CACTCGCGAAAGCTC RHE_CH02925 3058050 - 3056914 - | hypothetical protein TERM 2808 3058204 - 3058178 - R 85 -13 -3.78419 | overlap 3058171 CTACGAAACACAGAA CCCCTCCCAAGC GAA ACTCGGGAAGGG TGAAGAGAAGAGAAC RHE_CH02926 3058622 - 3058230 - | hypothetical protein TERM 2809 3058729 - 3058760 + r 82 -16.1 -2.68532 | overlap 3058721 TGGTTAGGTTTGAGT TGGTGTGATGGTT GTGGTG AACCATCACACCA TAATCTGGCTTTAGA TERM 2810 3058873 - 3058898 + r 71 -7.5 -4.1711 | overlap 3058875 TTAGGCGCGAGGGGT CTTTCGTCGGC GATC GCCGACGAATC TTTATTCGCCCTCAT TERM 2811 3058875 - 3058896 + r 86 -14.5 -3.68324 | overlap 3058873 AGGCGCGAGGGGTCT TTCGTCGGC GATC GCCGACGAA TCTTTATTCGCCCTC RHE_CH02927 3060984 - 3058900 - | Clp protease protein TERM 2812 3060534 - 3060516 - GR 74 -11.6 -3.29144 | TCATCGTGTCGAGAA CGCCGGCG GTG CGCCGGTG ATCGTCAGCCGGTCC RHE_CH02928 3061294 - 3060938 - | hypothetical protein RHE_CH02929 3061656 - 3061354 - | hypothetical protein RHE_CH02930 3062631 - 3061807 - | hypothetical protein TERM 2813 3062229 - 3062270 + g 95 -16.7 -3.88137 | overlap 3062264 TTTGTAGGGCATTTT TGTCCGGTTCAACCGGACA TTCG TGCCCTGTTGAACTGGACA TTTCTGCCCGGTTGT TERM 2814 3063212 - 3063251 + G 83 -12.9 -3.889 | gap 1, opp_overlap 3063235, overlap 3063214 TGAAAATGGGCTTTG GCTGCGATCGCTGTGCGA CGGAA TCGCGCTGTGATCGC-GC TTTGATGTACTTGGA TERM 2815 3063214 - 3063250 + G 70 -13 -2.92858 | opp_overlap 3063235, overlap 3063212 AAAATGGGCTTTGGC TGCGATCGCTGTGCGA CGGAA TCGCGCTGTGATCGCG CTTTGATGTACTTGG RHE_CH02931 3063061 - 3063342 + | hypothetical protein RHE_CH02932 3063580 - 3063882 + | hypothetical protein TERM 2816 3064790 - 3064755 - T 73 -12.6 -2.70946 | opp_overlap 3064755, overlap 3064754 3064752 CGTCGCTATAAAGAG GCTATCTCGTCCCCGC CTAG GCGGGCACGAGATAAG ATGGTTCCGTCGGTA ropB2 3065642 - 3065016 - | outer membrane protein RHE_CH02934 3066343 - 3066137 - | hypothetical protein TERM 2817 3066417 - 3066385 - H 75 -11.1 -3.53811 | opp_overlap 3066386 3066387 CTGACGCGTGGCAAA CCGCCGCCGGCGGCT CCT ATCGAGCGGCGGCGG ACAATTCTTTTCGGA RHE_CH02935 3066687 - 3067427 + | hypothetical protein TERM 2818 3067436 - 3067446 + TF 71 -4.6 -4.56597 | GCAGTAAATAGAAGC GGCG GTG CGTC TTTTTGAGGGCGAGC TERM 2819 3067646 - 3067612 - gT 100 -14.3 -5.35224 | overlap 3067642 3067643 CCCACAAAAAGAAAA CCGCCCTTGCCGATC GGGGA GACTGGCAAAGGCGG CTCTGGCGGCCGCAT TERM 2820 3067720 - 3067692 - gT 72 -3.8 -4.58395 | gap 1, overlap 3067705 3067706 GGTATTCTGCAAAAA TCAGCGGC-GC AAAGCGGG GCAGCCGCGGA CGTTGGCGAAGCTCA TERM 2821 3068162 - 3068199 + GT 70 -11.2 -3.01712 | opp_overlap 3068164 TCGCCGTCAAGGCAA AAGGGGCGGCAAGCGC ATGTCG GCGCTTGCCGTTCCGG TGTTCAGCGCCGGAC TERM 2822 3068197 - 3068164 - gT 100 -13.8 -4.27316 | opp_overlap 3068162 GCCGTCAAGGCAAAA GGGGCGGCAAGCGC ATGTCG GCGCTTGCCGTTCC GGTGTTCAGCGCCGG RHE_CH02937 3068508 - 3068203 - | hypothetical protein RHE_CH02936 3067509 - 3068309 + | hypothetical protein RHE_CH02938 3069335 - 3068865 - | hypothetical protein RHE_CH02939 3070001 - 3069387 - | hypothetical protein RHE_CH02940 3070784 - 3070065 - | Crp/Fnr family transcriptional regulator RHE_CH02941 3070917 - 3071162 + | hypothetical protein RHE_CH02943 3072095 - 3071697 - | hypothetical protein RHE_CH02942 3071329 - 3071757 + | hypothetical protein TERM 2823 3071887 - 3071862 - GT 70 -9.7 -3.41726 | opp_overlap 3071861, overlap 3071860 3071863 AATACTGTAATAAGA GGCATCGCCCT TGTA AGGGCAATGCG TGCCGTGATCGGTGC TERM 2824 3071886 - 3071863 - GT 73 -13.2 -2.64313 | opp_overlap 3071861, overlap 3071862 3071860 ATACTGTAATAAGAG GCATCGCCCT TGTA AGGGCAATGC GTGCCGTGATCGGTG RHE_CH02944 3072874 - 3072176 - | hypothetical protein RHE_CH02945 3073767 - 3072877 - | putative permease protein TERM 2825 3073105 - 3073090 - G 83 -6.8 -4.83269 | gap 1, overlap 3073092 ATACCAGAGCAAAAA GCCG-CC GAC GGTCGGC ACCAGGGCGTAATAG TERM 2826 3073484 - 3073434 - G 71 -9.4 -3.69323 | overlap 3073435 GCACCAGGATCGAAA CCGCCGCCGCGACCACCGGCAGCG TGC CGATGATGACGCCCGCATCGGCGG CTGAAGTCAAGCTGA RHE_CH02946 3074740 - 3073946 - | AraC family transcriptional regulator RHE_CH02947 3075586 - 3074801 - | putative aminoglycoside 3`-phosphotransferase protein RHE_CH02948 3076966 - 3075845 - | hypothetical protein RHE_CH02949 3077371 - 3077078 - | hypothetical protein TERM 2827 3077421 - 3077441 + r 86 -11.1 -4.16016 | GGCATGCGTCGGTCC TCGCTCGCG CAT CGCGATCGA TTTCTTCCCCCGTGG TERM 2828 3077549 - 3077531 - R 100 -13.8 -4.74012 | opp_overlap 3077531 ATCACAAAAGCAAAA GCCGGGCA CGA CGCCCGGC TTTCCAATCATCACG TERM 2829 3077531 - 3077549 + r 81 -13.1 -3.62096 | opp_overlap 3077531 ATCACAAAAGCAAAA GCCGGGC ACGAC GCCCGGC TTTCCAATCATCACG sigA 3079672 - 3077615 - | RNA polymerase sigma factor RpoD TERM 2830 3078332 - 3078355 + g 74 -14.6 -2.58249 | gap 1, overlap 3078331 GACCATTTCCTTCTT GGCGATGCGCG CTT CGCGC-TCGCC CTTCTGCACCATGTG TERM 2831 3078769 - 3078803 + g 76 -10.6 -3.83568 | CGGTGGCGGCAAGGC GCTGCTCGACCTGCTG GTC CTGCAGCTTGCGCAGC TTCTTGTAGGTCTCG tdh 3081210 - 3080173 - | L-threonine 3-dehydrogenase TERM 2832 3080529 - 3080542 + g 74 -2.3 -4.90778 | overlap 3080520 TGCCGATCGCCTTCA TCACG TCGG CGAGA TTTTCTTTCGATGCG kbl 3082616 - 3081429 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 2833 3081731 - 3081741 + g 76 -8.2 -4.1899 | AAAGACTCTTGCGCA CGGC ATC GCCG TTTTCGATCAGGTCG recQ 3084575 - 3082707 - | ATP-dependent DNA helicase protein TERM 2834 3083186 - 3083202 + g 74 -5.8 -4.50241 | overlap 3083189 CCGGCATATTCACAT GGCCGA AACGC TCGGTC TTTTCGTTGATGTTT dnaG 3086572 - 3084575 - | DNA primase TERM 2835 3085074 - 3085044 - G 71 -11.2 -3.41602 | GCGATTTCATCATAA TCGTCGATCATCAG GGC CGGATGATTGACGA TGGTGAGCGCCAGCA TERM 2836 3086837 - 3086822 - H 75 -2.5 -5.11033 | gap 1, overlap 3086824 TAGAACGTTAAAAAA CAGCCG TTTAT CGGC-G CGTTGGATCGCGCGT TERM 2837 3087085 - 3087125 + H 82 -8.3 -4.6644 | opp_overlap 3087041 3087039 3087084 3087086 3087087 3087090 3087093, overlap 3087090 3087093 CCGGCGGAAGCAAAG AGCAAGAAGGCAGGAGC GCCCCCA GCTCCTGCCTTCTTAAA TTTTTGGGCTCTGTT TERM 2838 3087124 - 3087086 - H 85 -14 -3.54146 | opp_overlap 3087085 3087090 3087093, overlap 3087041 3087039 3087084 3087087 3087090 3087093 CGGCGGAAGCAAAGA GCAAGAAGGCAGGAGC GCCCCCA GCTCCTGCCTTCTTAA ATTTTTGGGCTCTGT TERM 2839 3087123 - 3087087 - H 86 -17.5 -2.72166 | opp_overlap 3087085 3087090 3087093, overlap 3087041 3087039 3087086 3087084 3087090 3087093 GGCGGAAGCAAAGAG CAAGAAGGCAGGAGC GCCCCCA GCTCCTGCCTTCTTA AATTTTTGGGCTCTG TERM 2840 3087120 - 3087090 - H 95 -17 -3.50456 | opp_overlap 3087090 3087085 3087093, overlap 3087041 3087039 3087087 3087086 3087084 3087093 GGAAGCAAAGAGCAA GAAGGCAGGAGC GCCCCCA GCTCCTGCCTTC TTAAATTTTTGGGCT TERM 2841 3087090 - 3087120 + H 95 -17 -3.45433 | opp_overlap 3087041 3087039 3087087 3087086 3087084 3087090 3087093, overlap 3087085 3087093 GGAAGCAAAGAGCAA GAAGGCAGGAGC GCCCCCA GCTCCTGCCTTC TTAAATTTTTGGGCT TERM 2842 3087117 - 3087093 - H 85 -12.9 -3.86733 | opp_overlap 3087093 3087090 3087085, overlap 3087041 3087039 3087090 3087087 3087086 3087084 AGCAAAGAGCAAGAA GGCAGGAGC GCCCCCA GCTCCTGCC TTCTTAAATTTTTGG TERM 2843 3087093 - 3087117 + H 85 -12.9 -3.85159 | opp_overlap 3087041 3087039 3087090 3087087 3087086 3087084 3087093, overlap 3087090 3087085 AGCAAAGAGCAAGAA GGCAGGAGC GCCCCCA GCTCCTGCC TTCTTAAATTTTTGG RHE_CH02955 3087238 - 3088128 + | hypothetical protein RHE_CH02956 3088587 - 3088132 - | hypothetical protein TERM 2844 3089100 - 3089135 + G 88 -17.6 -3.01712 | gap 1, opp_overlap 3089091 AGGATATCGAGGACC TGACGCCTGCCGC-CCG CCA CGGCGCGGTCGGCGTCA TCTTCAAGGCCGACA carA 3088856 - 3090061 + | carbamoyl phosphate synthase small subunit TERM 2845 3090169 - 3090144 - T 83 -14.1 -3.37017 | gap 1, opp_overlap 3090144 AATCTTGAAGAGGAA GGACCGCTATCG GCC CGA-AGCGGTCC TTTTTTGGTATAGAA TERM 2846 3090144 - 3090169 + T 100 -14.1 -5.21709 | gap 1, opp_overlap 3090144 AATCTTGAAGAGGAA GGACCGCTATCG GCC CGA-AGCGGTCC TTTTTTGGTATAGAA RHE_CH02958 3091346 - 3090237 - | putative sulfite oxidase protein RHE_CH02959 3094184 - 3091716 - | adenylate cyclase protein RHE_CH02960 3095365 - 3094268 - | amino acid ABC transporter substrate-binding protein RHE_CH02961 3095828 - 3096148 + | hypothetical protein RHE_CH02962 3097567 - 3096164 - | multidrug efflux protein RHE_CH02963 3098957 - 3097713 - | transporter, permease protein TERM 2847 3098734 - 3098714 - G 81 -6.7 -4.79352 | overlap 3098717 GCACCGACAATAAAA GGATCGGCC GGC GGCCGAAAC GGTCGGACAGGTTTC TERM 2848 3099042 - 3099031 - R 79 -2.2 -5.18371 | GCTCAGAAAAGAAAA CGAA ACAA TCCG TGAACATTTCAAAGT RHE_CH02964 3100252 - 3099332 - | zinc protease protein TERM 2849 3099809 - 3099846 + g 76 -10.5 -3.85698 | gap 1, opp_overlap 3099806, overlap 3099814 TGGGCAGTAGAACGG CCCGGTCGCGGCTGAGGC GAA GCCGCAGCC-CGATTGCG TTTGTCCCGAGAAGA TERM 2850 3099814 - 3099841 + g 72 -12 -3.32997 | gap 1, opp_overlap 3099806, overlap 3099809 AGTAGAACGGCCCGG TCGCGGCTGAGGC GAA GCCGCAGCC-CGA TTGCGTTTGTCCCGA RHE_CH02965 3100716 - 3101744 + | L-iditol 2-dehydrogenase protein TERM 2851 3105104 - 3105119 + G 71 -6 -4.36914 | overlap 3105106 TCAAGGTGCTGGCGA CCGGCG GCAC CGCCCG TTTTCTCGGCGAAAA carB 3101914 - 3105402 + | carbamoyl phosphate synthase large subunit TERM 2852 3105455 - 3105425 - T 100 -25.6 -4.28361 | opp_overlap 3105427 GCAATTTCAGCAAAA CAGCGTCAGCGCTC CTT GAGCGCTGACGCTG AGTTCAACCAGAATC TERM 2853 3105427 - 3105453 + T 100 -22.4 -2.52464 | opp_overlap 3105425 AATTTCAGCAAAACA GCGTCAGCGCTC CTT GAGCGCTGACGC TGAGTTCAACCAGAA RHE_CH02967 3106928 - 3105474 - | putative uracil DNA glycosylase protein TERM 2854 3105762 - 3105774 + g 83 -9.1 -4.2828 | GCATTGCTTCACCTC GCCCA TAG TGGGC TTTTGGTGGATGCGC RHE_CH02968 3108160 - 3106928 - | hypothetical protein TERM 2855 3108329 - 3108358 + H 95 -9.4 -5.2894 | gap 1, overlap 3108332 TAACTAGGATTGTGG CACGGTTCCGAAG CTCCC CTTCGGGACC-TG TTTTCTTTTGTGTTT TERM 2856 3108332 - 3108356 + H 90 -12.2 -4.22673 | overlap 3108329 CTAGGATTGTGGCAC GGTTCCGAAG CTCCC CTTCGGGACC TGTTTTCTTTTGTGT TERM 2857 3108733 - 3108721 - g 75 -4.1 -4.72497 | CACCGAGGAAGAAAA GACCT ACC AGATC GTCGGAGACCAGGAA greA 3108413 - 3108889 + | transcription elongation factor GreA lpcC 3108926 - 3109975 + | lipopolysaccharide core biosynthesis mannosyltransferase protein TERM 2858 3110093 - 3110073 - T 74 -12.6 -2.80443 | CGATAGGGCAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGTCGAGCAGAG TERM 2859 3110157 - 3110127 - T 87 -15.5 -3.37354 | gap 1, overlap 3110132 GAGATCTATCGACAA GCGAACGGCCCGTC GGAT GACGGGCCGCT-GC AAATATCCAAGACTG TERM 2860 3110153 - 3110132 - T 91 -17.3 -3.24245 | overlap 3110127 CTATCGACAAGCGAA CGGCCCGTC GGAT GACGGGCCG CTGCAAATATCCAAG dctA 3111516 - 3110185 - | C4-dicarboxylate transporter DctA dctB 3111757 - 3113616 + | two-component sensor histidine kinase protein regulating C4-dicarboxylate transport system dctD 3113621 - 3114967 + | two-component response regulator protein regulating C4-dicarboxylate transport system lrp 3115597 - 3114974 - | AsnC family leucine-responsive regulatory protein TERM 2861 3116142 - 3116159 + G 72 -7.7 -4.12532 | gap 1, opp_overlap 3116142 TCGGCGGCGGCAACA GCGCCGTC GAA GA-GGCGC TTTATCTCTCCAACA trxBch 3115673 - 3116647 + | thioredoxin reductase (NADPH) protein TERM 2862 3117152 - 3117165 + G 71 -8.1 -3.85817 | GCGCAAGCTCTTCAC CGTGC ATAT GCACG TTTATGCGGCGCCCT RHE_CH02976 3116670 - 3117566 + | LysR family transcriptional regulator TERM 2863 3117749 - 3117775 + F 100 -8.7 -5.53288 | gap 1, opp_overlap 3117751, overlap 3117751 GACCTTCACACTTAT AAGGGCC-CTGG TTTT CCAGTGGCCCTC TTTTTTTGCCTTGCC TERM 2864 3117773 - 3117751 - f 75 -11.3 -3.39327 | gap 1, opp_overlap 3117749 3117751 CCTTCACACTTATAA GGGCC-CTGG TTTT CCAGTGGCCC TCTTTTTTTGCCTTG TERM 2865 3117751 - 3117773 + F 91 -11.3 -4.40173 | gap 1, opp_overlap 3117751, overlap 3117749 CCTTCACACTTATAA GGGCC-CTGG TTTT CCAGTGGCCC TCTTTTTTTGCCTTG TERM 2866 3117971 - 3117997 + F 91 -6.5 -5.40072 | gap 1, opp_overlap 3117973, overlap 3117973 GACCTTCACAATTCA AAGGGCC-CTGG TTTT CCGGTGGCCCTC TTTTTTTGCCCAAAA TERM 2867 3117973 - 3117995 + F 79 -9.1 -4.34482 | gap 1, opp_overlap 3117973, overlap 3117971 CCTTCACAATTCAAA GGGCC-CTGG TTTT CCGGTGGCCC TCTTTTTTTGCCCAA RHE_CH02977 3118119 - 3118412 + | ArsR family transcriptional regulator RHE_CH02978 3118414 - 3119499 + | MFS family transporter TERM 2868 3120543 - 3120580 + G 89 -16.9 -3.17075 | opp_overlap 3120525 3120563 3120564 CTATGACCGCGCTCT CGCGATCGACGCCGCCG AAAG CGGCCGCGCCGATCTCG TTGCCTTCGGCAAAC nerA 3119518 - 3120729 + | glycerol trinitrate reductase protein TERM 2869 3120922 - 3120907 - f 75 -9 -4.13654 | opp_overlap 3120906 3120900 3120907 TCTGCAAACGAGAAA TCCACC GAGA GGTGGA ATTTCTGCGTTCAAT RHE_CH02980 3120955 - 3121755 + | antibiotic resistance (streptomycin kinase) protein RHE_CH02981 3122844 - 3121822 - | LacI family transcriptional regulator TERM 2870 3122739 - 3122749 + g 72 -2.4 -4.74801 | overlap 3122724 TGGCTTCGTGGACGC TGCG AAC CGCC TTTTTGCTCACGTTC TERM 2871 3122954 - 3122907 - H 75 -10 -3.73106 | opp_overlap 3122908 3122937, overlap 3122908 3122912 CGAAAATTGCAAGAA TTGAAGTGCGCACCTCAA AATTGGCTTGCA CTGAGGTGCGCACCTCAG TTATAAGTAATTCAC TERM 2872 3122953 - 3122908 - H 76 -13.5 -2.83141 | opp_overlap 3122908 3122937, overlap 3122907 3122912 GAAAATTGCAAGAAT TGAAGTGCGCACCTCAA AATTGGCTTGCA CTGAGGTGCGCACCTCA GTTATAAGTAATTCA TERM 2873 3122949 - 3122912 - H 70 -10.7 -3.29013 | opp_overlap 3122908 3122937, overlap 3122908 3122907 ATTGCAAGAATTGAA GTGCGCACCTCAA AATTGGCTTGCA CTGAGGTGCGCAC CTCAGTTATAAGTAA TERM 2874 3122937 - 3122954 + H 70 -9.9 -3.39595 | opp_overlap 3122912 3122908 3122907, overlap 3122908 CAAAATTGGCTTGCA CTGAGGT GCGC ACCTCAG TTATAAGTAATTCAC TERM 2875 3124067 - 3124089 + G 76 -11.2 -3.68351 | GAAGGGCGTGCAGTT TGCCCAGCTC GGC GGGCAGGGCA TTTCGGTCGTCGCCG RHE_CH02982 3123105 - 3124439 + | sugar ABC transporter, substrate-binding protein RHE_CH02983 3124541 - 3125488 + | sugar ABC transporter, permease protein RHE_CH02984 3125485 - 3126426 + | sugar ABC transporter, permease protein RHE_CH02985 3126423 - 3126611 + | hypothetical protein TERM 2876 3127311 - 3127333 + G 78 -12.1 -3.76492 | AAGTTCGTCGCACAG TTCATCGGC TCGCC GCCGATGAA TTTCCTCGAATTCGA RHE_CH02986 3126615 - 3127712 + | sugar ABC transporter, ATP-binding protein RHE_CH02987 3127846 - 3128700 + | sugar ABC transporter, ATP-binding protein dak 3128712 - 3130391 + | dihydroxyacetone kinase protein RHE_CH02989 3131528 - 3130506 - | hypothetical protein TERM 2877 3130905 - 3130858 - G 81 -10.4 -4.18401 | gap 1, opp_overlap 3130866 TGATAGAGGGCAAAA GGCGGCAGCCGATCGGCCCCCTC GAT GAGCTGGGCGA-CGGTTTCCGCC ATGTCGGCCAGATAG TERM 2878 3131844 - 3131864 + G 70 -10.4 -3.63744 | gap 1, opp_overlap 3131843 3131844, overlap 3131840 3131846 ACCCTATGCCGAAAC GCTGGCGGC AACC GCCGCC-GC TCTTTTGCGCACGGC RHE_CH02990 3131611 - 3132561 + | LysR family transcriptional regulator RHE_CH02991 3132586 - 3133089 + | hypothetical protein RHE_CH02992 3133483 - 3133196 - | hypothetical protein chaA 3133804 - 3134811 + | LPS-associated cation exporter (Ca2+/H+ antiporter) protein RHE_CH02994 3135540 - 3134851 - | hypothetical protein kdsB2 3136505 - 3135636 - | 3-deoxy-manno-octulosonate cytidylyltransferase protein TERM 2879 3136002 - 3135978 - G 70 -7.9 -4.07568 | gap 1, opp_overlap 3135962 CCGCTTCGCCGAAAA GCC-GGCAAG CAGGAT CTTGCCTGGC AACTGCAAATCGGCG lpcA 3137554 - 3136553 - | galactosyltransferase protein RHE_CH02997 3138052 - 3137639 - | hypothetical protein TERM 2880 3138150 - 3138171 + r 75 -12.9 -3.10255 | opp_overlap 3138150, overlap 3138141 GCCAGATAAATAAAA GGCCCGCCG TCAC CGGCAGGCC TTCGATCGATATTAT TERM 2881 3138171 - 3138150 - R 100 -15.1 -5.05113 | opp_overlap 3138150 3138141 GCCAGATAAATAAAA GGCCCGCCG TCAC CGGCAGGCC TTCGATCGATATTAT aatAch 3139400 - 3138198 - | aspartate aminotransferase TERM 2882 3138913 - 3138924 + g 72 -7.2 -4.11216 | AACCACTTGGTCTTC GGCG TGAT CGCC TTTTCGAGATCGGCG TERM 2883 3138997 - 3138983 - G 78 -7 -4.54727 | overlap 3138984 TTGCCGAAACGAAAA CCGGCG TGC CGCCGC AGAGCGCCACCATCT TERM 2884 3141242 - 3141194 - g 89 -17.4 -3.14132 | gap 1, opp_overlap 3141195 CTGCTTGGCGAGGAA CTGGCGCGGTTGGCGAAACCGGG CGAT CTCGTCGTCGCCA-CCGCGCCAG ACGTCGGCGACCCCA RHE_CH02999 3139907 - 3141538 + | putative glycosyltransferase protein TERM 2885 3142759 - 3142713 - g 86 -15.8 -3.57462 | opp_overlap 3142714, overlap 3142691 3142714 GAGCTCACCTGGAAA GCCGCTCCGGGGAAGACGCCGA GTG CCGGCCTCTTCCGCGAAGCGAT TGATGGCAAGACCTA TERM 2886 3142714 - 3142758 + G 80 -14.2 -3.14211 | opp_overlap 3142691 3142713 3142714 AGCTCACCTGGAAAG CCGCTCCGGGGAAGACGCCG AGTGC CGGCCTCTTCCGCGAAGCGA TTGATGGCAAGACCT TERM 2887 3142758 - 3142714 - g 87 -19.3 -2.74263 | opp_overlap 3142714, overlap 3142691 3142713 AGCTCACCTGGAAAG CCGCTCCGGGGAAGACGCCGA GTG CCGGCCTCTTCCGCGAAGCGA TTGATGGCAAGACCT RHE_CH03000 3141813 - 3144155 + | hypothetical protein TERM 2888 3144193 - 3144162 - g 86 -7.3 -4.72272 | overlap 3144165 3144169 GGTTTCTAGCAAAAA TCAGGAAGCGGC-CG AATT CGAGCCGCTGCC-GA CCTATCTGGAACTCG RHE_CH03001 3144145 - 3144906 + | hypothetical protein RHE_CH03002 3144966 - 3146108 + | putative glucose dehydrogenase B protein RHE_CH03003 3146583 - 3146113 - | hypothetical protein TERM 2889 3146447 - 3146423 - G 71 -4.9 -4.43879 | opp_overlap 3146423, overlap 3146425 ACGACCGAAGCAAAA TCGCCGAAACC ATT GATGTCGTCGA TCGTTTCGGGAACAC RHE_CH03004 3146713 - 3147573 + | putative transporter, permease protein cspA5 3148058 - 3148273 + | cold shock protein TERM 2890 3148307 - 3148324 + F 95 -12.7 -4.5442 | GAATTCGAGTTGAAG CCCGGCA GCAA TGCCGGG TTTTGTCGTTCAGCC TERM 2891 3148400 - 3148382 - f 89 -13.2 -3.91897 | GTTGTCATCGAGAAA GGAACCGA CAT TCGGTTCC CGGAATTAGGGTATT RHE_CH03006 3148422 - 3148874 + | hypothetical protein TERM 2892 3148899 - 3148918 + T 100 -15 -4.35524 | opp_overlap 3148899 GATCCCTGATACAAA GCGCCGCT CTTC AGCGGCGC TTTTGCGTTTGAGGC TERM 2893 3148918 - 3148899 - T 100 -15 -4.0371 | opp_overlap 3148899 GATCCCTGATACAAA GCGCCGCT CTTC AGCGGCGC TTTTGCGTTTGAGGC RHE_CH03007 3149808 - 3148936 - | short-chain dehydrogenase protein TERM 2894 3150238 - 3150256 + G 73 -11 -3.64703 | CGCTCTGGCGGTGGA TCGTCGAG CGC CTCGGCGA TTTCGATGCGCGCAA RHE_CH03008 3149826 - 3150302 + | putative transcriptional regulator protein RHE_CH03009 3151675 - 3150299 - | two-component sensor histidine kinase protein RHE_CH03010 3152451 - 3151750 - | two-component response regulator protein RHE_CH03011 3152889 - 3152452 - | MarR family transcriptional regulator TERM 2895 3153411 - 3153381 - R 79 -12.7 -3.43785 | gap 1, opp_overlap 3153380 3153368 GACTATATGAAGGAA GTCTATCCGACGGC GGTC GCCGCCGGATA-AC ATCTTCACGCAGTTG TERM 2896 3153696 - 3153656 - R 70 -11.8 -2.53715 | gap 1, opp_overlap 3153667, overlap 3153655 GGCAGGAGGAGGAAT TGCCCGG-ACGAGGCGGCC TGTC GACCGCCTCGTTCCGGATC TGCCGATGATCTTAC RHE_CH03012 3154325 - 3153708 - | hypothetical protein TERM 2897 3153853 - 3153880 + g 74 -10.6 -3.71873 | gap 1, opp_overlap 3153847 ACGACCACATCGCCG CCAAGCCGCACCG TCT CGGT-CGGATTGG TTTCGATGTAGGTCC TERM 2898 3154176 - 3154160 - G 72 -13.7 -2.72049 | overlap 3154149 TACAGCCGTCAAGCA CCGCGGT CGA ACCGCGG GTGGCAAGGCCGACT TERM 2899 3154716 - 3154730 + G 74 -9.2 -3.9461 | opp_overlap 3154697 TCGTCGTCGATCCGG GCGGCG ACG TGCCGC TTATTCTTCAGGCGA RHE_CH03013 3154613 - 3155305 + | putative hydrolase protein TERM 2900 3155321 - 3155298 - T 79 -8.2 -4.42653 | opp_overlap 3155296 3155298 3155301, overlap 3155299 ACGGGACCGACAAAA CGATGTGAGC CAAT ACTCACATCA TCTTCATGCCGTTCG csaA 3155655 - 3155314 - | methionine--tRNA ligase protein proC 3156494 - 3155667 - | pyrroline-5-carboxylate reductase TERM 2901 3155854 - 3155815 - G 72 -13.7 -2.71731 | gap 2, opp_overlap 3155816 3155816 CGCAGCCGCGAAGCA TCGTCGGGGGACTGGTGCA AGAG TTCACCAG-CCCCCG-CGA CCGTTTCCCGCGCAA TERM 2902 3156101 - 3156081 - G 77 -12.5 -3.60792 | opp_overlap 3156098 TGCTGAATTGGCAAA GGCCCCGGT CAC ACCGCGGCC GACCATAGCCGGCGT RHE_CH03016 3156996 - 3156496 - | hypothetical protein RHE_CH03017 3157645 - 3157385 - | hypothetical protein lgt 3157882 - 3158700 + | prolipoprotein diacylglyceryl transferase RHE_CH03019 3158719 - 3159819 + | hypothetical protein RHE_CH03020 3159879 - 3160724 + | hypothetical protein RHE_CH03021 3160730 - 3161881 + | Xaa-Pro dipeptidase protein TERM 2903 3162137 - 3162158 + G 91 -9.3 -4.56597 | opp_overlap 3162134, overlap 3162134 GGCGAGGCAGAACGT CTGGCCGGC ACCC GCCAGCCGG TTTTTGCCGGGAGCA TERM 2904 3162380 - 3162325 - g 73 -12.7 -3.1552 | gap 4, overlap 3162323 CCCGATCGAGGAACA GGCGC-GGCCGCCGGCTGCCGCCGGCG CCGGAT CGCCAACA-CAGCC--CGGCCAGCGCC TTGACCCGCAGCAGC RHE_CH03022 3161984 - 3162805 + | hypothetical protein TERM 2905 3162893 - 3162878 - f 78 -6 -4.74801 | GAAGCTGACTAAAAA GCGCGG CTAT CAGCGC ATAACAGGCGGACCA prsAch 3162911 - 3163843 + | ribose-phosphate pyrophosphokinase TERM 2906 3164004 - 3164026 + T 100 -10.5 -5.10163 | opp_overlap 3164006, overlap 3164006 TTGGTCAGCAGCCTA AAGGCCGGC ACAAA GCCGGCCTC TTTTATTTTCCGATT TERM 2907 3164024 - 3164006 - T 81 -13.1 -3.62096 | opp_overlap 3164004 3164006 GGTCAGCAGCCTAAA GGCCGGC ACAAA GCCGGCC TCTTTTATTTTCCGA TERM 2908 3164006 - 3164024 + T 91 -13.1 -4.16397 | opp_overlap 3164006, overlap 3164004 GGTCAGCAGCCTAAA GGCCGGC ACAAA GCCGGCC TCTTTTATTTTCCGA RHE_CH03024 3165594 - 3164056 - | hypothetical protein TERM 2909 3164138 - 3164151 + g 71 -8.1 -3.86202 | overlap 3164136 TCCAGCCCCTGATCC GGACC ATCC GGTCC TTTGATCTGCTGGCC TERM 2910 3166013 - 3165982 - H 73 -5 -4.55128 | ACCTCGAAAGGAAAA GCCATGAGCCAGGA AACT TACGAGCTCAAGGC CGAGGCGCGCGAACG rplY 3165985 - 3166599 + | 50S ribosomal protein L25/general stress protein Ctc TERM 2911 3166627 - 3166657 + F 95 -12.5 -4.4078 | opp_overlap 3166625 3166628, overlap 3166628 3166651 ATTGTAAAGCATATG ACCCGCCTTCCCG TGAAC TGGGGAGGCGGGC TTTTCGTTGCCCGCA TERM 2912 3166628 - 3166656 + F 87 -16 -3.24146 | opp_overlap 3166625 3166628, overlap 3166627 3166651 TTGTAAAGCATATGA CCCGCCTTCCCG TGAAC TGGGGAGGCGGG CTTTTCGTTGCCCGC TERM 2913 3166656 - 3166628 - f 74 -13.1 -2.7314 | opp_overlap 3166628 3166627 3166651, overlap 3166625 TTGTAAAGCATATGA CCCGCCTTCCC GTGAACT GGGGAGGCGGG CTTTTCGTTGCCCGC TERM 2914 3166831 - 3166860 + G 84 -2.7 -5.29716 | overlap 3166831 TTTTTGGGATTGTTT GCGGGGCGCTG CTTGTTTT TGTCGCTCCGC TTTTTGTTCTCTTCC TERM 2915 3168046 - 3168076 + G 79 -16.8 -2.5409 | overlap 3168069 AGACCCATCTTGCTC CCTCCGACGAGGCG GCG CGCCTCGGCGGAGA TGAGTTCGCCATTCT RHE_CH03026 3166791 - 3169142 + | putative sensory box/GGDEF family protein TERM 2916 3169463 - 3169424 - g 74 -12.9 -3.30124 | gap 1, opp_overlap 3169429 CGCCACCGCCCACAA CAGCGCGCGCGACCCGTT GTTCA AATGGGTCGAGC-CGCTG CTCATCGACCGAAAC RHE_CH03027 3169167 - 3169880 + | putative amino acid ABC transporter, substrate-binding protein TERM 2917 3170661 - 3170630 - g 95 -15.2 -4.04141 | gap 1 CAACAACCAACCAAA GC-TGCCGGCCACCG GCC CGATGGCCGACATGC TCAAGAAGATGTTCG pth 3169971 - 3170693 + | peptidyl-tRNA hydrolase RHE_CH03029 3170812 - 3171111 + | acetyltransferase protein clpS 3171432 - 3171121 - | ATP-dependent Clp protease adaptor RHE_CH03031 3171755 - 3172858 + | translation-associated GTPase RHE_CH03032 3173947 - 3172874 - | hypothetical protein TERM 2918 3173395 - 3173381 - G 72 -2.7 -4.75372 | overlap 3173382 ATGATCGACGAAAAA CGCGG GATTG CCGCT TAGCCATTGCACCAG TERM 2919 3173604 - 3173591 - G 82 -3.1 -5.16841 | overlap 3173572 3173603 GGACATCAACAAAAA TGTCC AGCA GAACA GCGCGATCGTCAGGC RHE_CH03033 3174125 - 3174631 + | enoyl-CoA hydratase protein RHE_CH03034 3174628 - 3175095 + | putative enoyl-CoA hydratase protein aptch 3175725 - 3175114 - | adenine phosphoribosyltransferase TERM 2920 3175747 - 3175730 - R 100 -12.7 -5.5604 | opp_overlap 3175730 GGAACCAACAAAAAA GGCGGCT CGCA AGCCGCC TTTCGAATTCAGACA TERM 2921 3175730 - 3175747 + r 81 -12.7 -3.66178 | opp_overlap 3175730 GGAACCAACAAAAAA GGCGGCT CGCA AGCCGCC TTTCGAATTCAGACA fbcC 3176655 - 3175771 - | ubiquinol--cytochrome c reductase, cytochrome c1 subunit protein TERM 2922 3176634 - 3176648 + g 73 -6.4 -4.38129 | opp_overlap 3176634 3176635, overlap 3176635 CGGCAAGCGGCAGAA TGCTTG CAA CAAGCG TTTTCATAGTTCTAT fbcB 3177961 - 3176681 - | ubiquinol-cytochrome-c reductase, cytochrome b subunit protein TERM 2923 3177441 - 3177386 - G 75 -3.3 -4.88067 | gap 3, overlap 3177387 3177409 3177417 ATGCAGCGAGAAAAA GCGGTTCAGC-GTCGGCTGATCAACGGC AAA GCCGCCGAGCAGG-AACTGCTGCACC-C ATTCGCCGACCAGAG fbcF 3178554 - 3177976 - | ubiquinol-cytochrome-c reductase, iron-sulfur subunit protein TERM 2924 3178795 - 3178756 - H 70 -12.2 -2.62613 | gap 1, opp_overlap 3178756, overlap 3178753 TTTTACGGCAAACAC CCGCGTGCCCTTATGTTGC ATT GCAACAAAAGAGC-CGCCG TGTTAGGCGCAACCG RHE_CH03039 3178841 - 3179773 + | putative endonuclease/exonuclease/phosphatase family protein RHE_CH03040 3181642 - 3179729 - | ABC transporter ATP-binding protein RHE_CH03041 3181805 - 3182035 + | hypothetical protein TERM 2925 3182128 - 3182091 - T 100 -12.7 -5.58074 | opp_overlap 3182096, overlap 3182096 CAATCATCAAAAAAA TCAAATGCCCTCCCCGC TCAC GCCGGGAGGGCATTTTT ATTCCGCTGCCTCTT TERM 2926 3182123 - 3182096 - T 100 -17 -4.53225 | opp_overlap 3182096, overlap 3182091 ATCAAAAAAATCAAA TGCCCTCCCCGC TCAC GCCGGGAGGGCA TTTTTATTCCGCTGC TERM 2927 3182096 - 3182123 + T 100 -17 -5.08601 | opp_overlap 3182096 3182091 ATCAAAAAAATCAAA TGCCCTCCCCGC TCAC GCCGGGAGGGCA TTTTTATTCCGCTGC RHE_CH03042 3183983 - 3182127 - | ABC transporter ATP-binding protein TERM 2928 3183615 - 3183591 - G 72 -4.2 -4.56597 | opp_overlap 3183581, overlap 3183593 CTCGTTGGCGAAAAA CGTCATGCTG TGGCG CAGCAGGAAG CGGTGCATCTGCCAG RHE_CH03043 3184368 - 3184829 + | tRNA/rRNA methyltransferase protein RHE_CH03044 3185027 - 3186673 + | sodium-dependent phosphate transporter protein RHE_CH03045 3186937 - 3186677 - | hypothetical protein TERM 2929 3186896 - 3186927 + g 72 -3.7 -4.62069 | gap 1 TCTCGCCATTCTGCG TTTCAGG-CCGTCG AAGGA CGGAGGTCCTGGAA TTTTTGCCATCAACC hemF 3187458 - 3188369 + | coproporphyrinogen III oxidase RHE_CH03047 3188472 - 3188735 + | hypothetical protein RHE_CH03048 3188849 - 3189034 + | hypothetical protein TERM 2930 3189043 - 3189024 - T 73 -12.8 -2.56596 | opp_overlap 3189020, overlap 3189020 TCCGCGACGAAGCCA CCGCCGCC TGAT GGCGGCGA GCGGGTCCTTGCGAC papS 3190238 - 3189105 - | poly(A) polymerase protein TERM 2931 3189864 - 3189852 - G 71 -9.1 -3.71353 | AAAGAAGCGGAAGAA GCGCA GGA TGCGC AGATGGTCCTCGGCG RHE_CH03050 3191005 - 3190355 - | MutT/NUDIX family NTP pyrophosphohydrolase TERM 2932 3190587 - 3190563 - G 70 -9.9 -3.57263 | AGCGTCAGCGCGAAA CCCCGCTCGAC GAC GCCGAGCACGG GCGTAATGCGGAAGC RHE_CH03051 3191625 - 3191002 - | hypothetical protein TERM 2933 3191521 - 3191535 + g 84 -2.7 -5.30686 | ATTCCAGCGCTCGAC CGGCG CTAGC CCCCG TTTTTTATCGCTATT TERM 2934 3191833 - 3191821 - g 83 -9.1 -4.2558 | overlap 3191808 CAGCCTCGATGAAAA GGCGA TCG TCGCC GCCGCCGAAAGGGCG RHE_CH03052 3191789 - 3192793 + | putative methanol dehydrogenase regulator MoxR-like protein RHE_CH03053 3192885 - 3193727 + | hypothetical protein TERM 2935 3194185 - 3194229 + G 75 -12 -3.53811 | opp_overlap 3194182 3194183 CGCCCGCGACAAGCT GCGCGC-CGCCGAGCCGCGGCC GCT GGTCCCGGACC-GCGAGCGCGC TTTCCAGGCGCTGCG TERM 2936 3195594 - 3195611 + G 76 -7.7 -4.30844 | gap 1, overlap 3195595 TCGGCGGCGAAAGCT G-GTCGGC AAA GCCGACTC TTTTCCTGGTCGCCT TERM 2937 3195595 - 3195609 + G 76 -11.4 -3.7574 | overlap 3195594 CGGCGGCGAAAGCTG GTCGGC AAA GCCGAC TCTTTTCCTGGTCGC TERM 2938 3196320 - 3196304 - g 86 -7.9 -4.72386 | opp_overlap 3196303, overlap 3196296 3196293 3196305 GAAACGACCGAAAAA TCGGCGG CGA CGGCCGA CGGGGTTTCGCCGAT TERM 2939 3196402 - 3196384 - g 73 -6.7 -4.26903 | gap 1, overlap 3196385 GGCAGTCGACGAAAA CGGCACGC CGAT GC-TGCCG ACCGTGCCCTCGGAT RHE_CH03054 3193724 - 3196537 + | hypothetical protein RHE_CH03055 3196539 - 3198611 + | hypothetical protein RHE_CH03056 3200401 - 3198809 - | insertion sequence transposase protein TERM 2940 3200410 - 3200430 + r 71 -6.8 -4.34771 | GCGTCATGAGGCCTA CCAGAGCA CAATT TGCTCCGG TTTTCCTGCCTTTTC RHE_CH03057 3200819 - 3200475 - | insertion sequence transposase protein RHE_CH03058 3201199 - 3200816 - | insertion sequence transposase protein RHE_CH03059 3201262 - 3201537 + | putative acetyltransferase protein RHE_CH03060 3202038 - 3201538 - | acetyltransferase protein RHE_CH03061 3202318 - 3203304 + | putative glutathione S-transferase protein RHE_CH03062 3203862 - 3203311 - | MutT/NUDIX family hydrolase TERM 2941 3204335 - 3204346 + GH 83 -7.2 -4.56597 | GCCACGCCCCCCTTC GCCG CATC CGGC TTTTTCAGCGCCCGG TERM 2942 3204558 - 3204591 + GH 71 -12.4 -2.79183 | opp_overlap 3204555 CGCATCTGAACACGC TGCACTGGCTGCGC GGCCAG GTGCAGCCGGTGCC TGTCGTCGGCATCGC RHE_CH03063 3203831 - 3204769 + | putative phosphatase protein RHE_CH03064 3204928 - 3205488 + | hypothetical protein TERM 2943 3205532 - 3205518 - f 83 -10 -4.33274 | GCTAGATTAGGAAAA CCCCTT GGG AAGGGG ATAAGATGACCGAAT TERM 2944 3205608 - 3205648 + F 72 -10.3 -3.4071 | opp_overlap 3205607 3205606 3205647, overlap 3205609 3205610 3205647 CAGTGCCGATAAAGC CGGTTTCGCGTCCGATGGC GAA GCTTTCGTCCGCGAAACCA TTGTGAATGCTTCTT TERM 2945 3205609 - 3205647 + F 75 -13.8 -2.63703 | opp_overlap 3205607 3205606, overlap 3205608 3205610 AGTGCCGATAAAGCC GGTTTCGCGTCCGATGGC GAA GCTTTCGTCCGCGAAACC ATTGTGAATGCTTCT TERM 2946 3206002 - 3206035 + GF 70 -10.3 -3.23395 | overlap 3206013 CGCCATCCATCGCAT GATCGCCGAAATGCC GGAC GGCGTTTCCTCGATC TTCCTGCTCGTCGAT rpoE3 3205673 - 3206182 + | RNA polymerase sigma factor protein (sigma-24) RHE_CH03066 3206151 - 3207023 + | hypothetical protein leuA2 3209048 - 3207366 - | 2-isopropylmalate synthase RHE_CH03068 3210651 - 3209422 - | benzoate transporter protein TERM 2947 3209868 - 3209857 - G 76 -7.2 -4.34008 | CAGCAACGAAAAGAA GCCG GTGA CGGC AAAAAGGGGACCTGG TERM 2948 3210777 - 3210747 - R 100 -22.7 -4.98531 | opp_overlap 3210736 3210747 GTCCGAAAGCAAAAA CGCCCTTGCCTGC TGTCG GCAGGCAAGGGCG TCTTGAAGGCTTCGG TERM 2949 3210747 - 3210777 + r 100 -23.4 -3.04322 | opp_overlap 3210747, overlap 3210736 GTCCGAAAGCAAAAA CGCCCTTGCCTGCT GTC GGCAGGCAAGGGCG TCTTGAAGGCTTCGG clpP3 3211386 - 3210802 - | ATP-dependent Clp protease proteolytic subunit TERM 2950 3212042 - 3212016 - g 74 -14.4 -2.64243 | CCAGACGCCACAGCA GCCCGCTGGCCC CTG GAGCCAGCAGAC CTACGCGCCGTCTGC RHE_CH03070 3211618 - 3212379 + | hypothetical protein RHE_CH03071 3212976 - 3212512 - | 7-cyano-7-deazaguanine reductase RHE_CH03072 3213890 - 3212976 - | cation efflux protein TERM 2951 3213972 - 3213947 - R 100 -16.1 -4.36595 | opp_overlap 3213946 CATTGAAATGCAAAA CCGCCCACGCG ATGT CGCGCAGGCGG CTCAGTTGAGGGTGA TERM 2952 3214082 - 3214060 - R 86 -7.7 -4.8622 | gap 1, overlap 3214027 CCGCCCAACGAAAAA CAGC-CCGGA GCGA TCCGGTGCCG CAGCTCATGAAACCG RHE_CH03073 3214758 - 3214087 - | hypothetical protein TERM 2953 3214155 - 3214168 + g 83 -9.5 -4.26076 | GGCCTGCCGGCGTCA GGGCG TAGA CGCCC TTTTCCTGACGCTCG TERM 2954 3214324 - 3214369 + g 78 -15.4 -2.70932 | gap 2 CGTCATGATTGGTGC CCGCGAGCCGCCGCCGACGGCG GGAT CGCCG-CGGCGGC-GCTGGTGC TCATTGACGAGACGC RHE_CH03074 3215012 - 3214773 - | hypothetical protein trpE 3217424 - 3215235 - | anthranilate synthase TERM 2955 3215960 - 3216012 + g 83 -15.6 -3.14344 | gap 1, opp_overlap 3215968, overlap 3215952 CTTCTTCTTCCTCTG GGATGGAATCGTTGAGCAGCGTCGC GCCG GCG-CGCACCTCGGCGATGCCATCC TTGATGCGCACGGTG TERM 2956 3217295 - 3217281 - G 83 -9.2 -4.26076 | opp_overlap 3217289 GTAGTTCGACGAAAA CACCGC ACC GCGGCG CTCGTCGAGCTTGTC TERM 2957 3217499 - 3217477 - R 100 -11.3 -5.86976 | gap 1, opp_overlap 3217494 CGATAAAACAAAAAA GCCGCCTCGA AGTT TCG-GGCGGC TCACTCGTCGTCGTC TERM 2958 3217664 - 3217645 - R 95 -12.8 -4.45544 | TCGCACGAATGAAAA GGGCGGCC CGGA AGCCGCCC CTCCCCCAGCCTTGA RHE_CH03076 3219951 - 3217693 - | outer membrane iron receptor protein fhs 3223150 - 3221471 - | formate--tetrahydrofolate ligase TERM 2959 3221524 - 3221512 - G 75 -3.3 -4.82901 | opp_overlap 3221513 3221519, overlap 3221513 GGTCGTTCAGAAAAA TCCGC TCC GCCGA CGGTGATTTCGGCAG TERM 2960 3221593 - 3221582 - G 70 -7.2 -3.96624 | overlap 3221583 GATGGCGACGACAAA GCCG GCGC CGGC CGAAAGCCGCACCTC TERM 2961 3223279 - 3223298 + r 83 -10 -4.30576 | gap 1 TTGTGGCGCTCAACG GTCG-CGGC TTC GCCGTCGAC TTTTCGTGCTCGACG RHE_CH03079 3225262 - 3223739 - | hypothetical protein TERM 2962 3226263 - 3226249 - g 71 -5.6 -4.3534 | overlap 3226250 GCGTAATGAGGAAAA CGCGCA CAG TGCGCT GTCGGCGCGTGAACT TERM 2963 3226406 - 3226388 - g 100 -3.8 -5.63504 | overlap 3226389 3226390 AATGCGATAAAAAAA CTCGATTG CGT CAATCGCA CCCAGTTAGTAGCAA RHE_CH03080 3225725 - 3226450 + | LuxR family transcriptional regulator RHE_CH03081 3226588 - 3226956 + | hypothetical protein RHE_CH03082 3228107 - 3226977 - | hypothetical protein TERM 2964 3228031 - 3228018 - G 79 -9.5 -4.15222 | overlap 3228027 ATGCGCGGCAAGAAA GGGCC AGAA GGCCC AGGCGGAAAACAGCC TERM 2965 3228099 - 3228088 - G 93 -7.2 -5.03715 | ATCAGCCTGAAAAAA CCGG CAAT CCGG TCAAGCATCGTCGTC TERM 2966 3228193 - 3228203 + r 86 -6.8 -5.03314 | opp_overlap 3228193 3228191 AGGCCGAGCACAACA CGAG GCC CTCG TTTTTTACGAATGAA RHE_CH03083 3229319 - 3228246 - | hypothetical protein tdk 3229994 - 3229392 - | thymidine kinase proX 3230231 - 3231187 + | proline/glycine betaine ABC transporter, substrate-binding protein TERM 2967 3231193 - 3231221 + F 100 -11.8 -4.88388 | gap 1, opp_overlap 3231197, overlap 3231197 CGGCCTTTGATCACA TGAA-CGGGGCGG CTCG CCGCCCTGCTTCA TTTTTGTCCGATTGT TERM 2968 3231197 - 3231216 + F 75 -12.8 -2.92077 | opp_overlap 3231197, overlap 3231193 CTTTGATCACATGAA CGGGGCGG CTCG CCGCCCTG CTTCATTTTTGTCCG TERM 2969 3231216 - 3231197 - f 70 -10.6 -3.29471 | opp_overlap 3231197 3231193 CTTTGATCACATGAA CGGGGCGG CTCG CCGCCCTG CTTCATTTTTGTCCG proW 3231262 - 3232107 + | proline/glycine betaine ABC transporter, permease protein proV 3232104 - 3233156 + | proline/glycine betaine ABC transporter, ATP-binding protein TERM 2970 3233293 - 3233303 + G 79 -8.2 -4.35524 | ATTGCCGTTCTCGAC CCGG ACA CCGG TTTTCCCTTTGCCAG RHE_CH03088 3233188 - 3233937 + | hypothetical protein TERM 2971 3234159 - 3234148 - g 70 -7.2 -4.08767 | TGCAGCCTGGTAAAA GGCG AAGT CGCC GTCGGAGTGCTCGCC nolRch 3234046 - 3234363 + | ArsR family transcriptional regulator TERM 2972 3234457 - 3234494 + F 100 -21.5 -4.12599 | opp_overlap 3234473 CACGTGAACCTTAAT GGCACGACCGGCAAATC TGGC GATTTGCCGGTTGTGTC TTTTGGCGAATTCTT TERM 2973 3234736 - 3234712 - g 74 -4.9 -4.62069 | gap 1 TCGCCAGTTCAAAAA GGAGCCG-CG GTTATT CGTCGGCGCC AAGGACATGTATTAT RHE_CH03090 3234635 - 3235960 + | beta amino acid--pyruvate transaminase TERM 2974 3236016 - 3235987 - T 85 -12.9 -3.78953 | gap 1, opp_overlap 3235987 AGGCTCAGTACCAAA GACCCGCGATGGAC AAT GTTC-TCGCGGGTC TTTTCGTCTGAAAAT TERM 2975 3235987 - 3236016 + T 100 -15.1 -4.3467 | gap 1, opp_overlap 3235987 AGGCTCAGTACCAAA GACCCGCGATGGAC AAT GTTC-TCGCGGGTC TTTTCGTCTGAAAAT RHE_CH03091 3236914 - 3236039 - | putative phosphohydrolase protein TERM 2976 3236897 - 3236876 - G 75 -2.9 -4.82901 | gap 1, overlap 3236877 3236878 GCGCTTGCACAAAAA CG-GATCCTG CCA CAGGCCCTCG ATAACCTCCACAAAC RHE_CH03092 3237261 - 3236977 - | hypothetical protein TERM 2977 3237182 - 3237200 + g 73 -8.8 -3.99779 | opp_overlap 3237165 3237154 CATTCCGGCTGAATT TTCGGCCG GAT CAGCCGAA TTTCCTTCCATTTTG braC1 3237413 - 3238516 + | amino acid ABC transporter, substrate-binding protein TERM 2978 3238540 - 3238561 + F 95 -13.7 -4.33258 | opp_overlap 3238540 3238535, overlap 3238552 3238552 3238553 3238555 TCTCGTGAAACAGGA TCGGGTGCC TTGC GGCGCCCGA TTTGTATTTGGGCGT TERM 2979 3238864 - 3238847 - f 88 -10.5 -4.43307 | CGCTCAACAAAAGAA CAGCCGC ACAG GCGGCCG AAATAATTGCTTTCA TERM 2980 3239934 - 3239876 - g 75 -14.6 -2.79183 | gap 2, overlap 3239879 GCCATCTCGATCATA TGATTC-GCACGGC-GATGGCGAGCGGC GTCGA GCCGCTCGCCATCTACCGCGCCGCCTCG ATCTCTGCCGCCCGC TERM 2981 3239930 - 3239879 - g 77 -15.1 -2.66435 | gap 1, overlap 3239876 ATCTCGATCATATGA TTCGCACGGC-GATGGCGAGCGGC GTCGA GCCGCTCGCCATCTACCGCGCCGC CTCGATCTCTGCCGC adeC1 3239026 - 3240723 + | adenine deaminase protein RHE_CH03095 3242466 - 3240745 - | alpha-glucosidase protein oppA 3242751 - 3244331 + | oligopeptide ABC transporter, substrate-binding protein TERM 2982 3244369 - 3244339 - f 100 -25.6 -4.31688 | AAGAGTAAGGGAAAA CGGTCCTTCCCGCA CAC TGCGGGAAGGACCG GCCCACGACCATGAT oppB 3244380 - 3245303 + | oligopeptide ABC transporter, permease protein TERM 2983 3245631 - 3245666 + G 75 -14.7 -2.69151 | overlap 3245619 3245629 TCTCGCTGGCCGTGG CGCTGACGGCGACCG TCGTCT CGGTCGTCATCGGCG TGCTCTATGGCGCAA oppC 3245300 - 3246217 + | oligopeptide ABC transporter, permease protein TERM 2984 3246872 - 3246906 + G 75 -14.8 -2.69151 | overlap 3246869 3246900 GATCACCCACGATCT CGGCGTCGTTGCCGGC CTC GCCGACCGCGTCGCCG TCATGTATGCCGGCC oppD 3246219 - 3247220 + | oligopeptide ABC transporter, ATP-binding protein oppF 3247213 - 3248199 + | oligopeptide ABC transporter, ATP-binding protein TERM 2985 3248205 - 3248231 + F 95 -11.5 -4.56775 | opp_overlap 3248206, overlap 3248206 CAGGCCGTGAATGGA ACGAGGGCCGC ATGAA GCGGCCTTCGC TTTTTCCAAACGCCT TERM 2986 3248230 - 3248206 - f 75 -12.8 -3.17194 | opp_overlap 3248205 3248206 AGGCCGTGAATGGAA CGAGGGCCGC ATGAA GCGGCCTTCG CTTTTTCCAAACGCC TERM 2987 3248206 - 3248230 + F 86 -15 -3.33744 | opp_overlap 3248206, overlap 3248205 AGGCCGTGAATGGAA CGAGGGCCGC ATGAA GCGGCCTTCG CTTTTTCCAAACGCC RHE_CH03101 3248378 - 3248719 + | hypothetical protein TERM 2988 3248735 - 3248762 + F 100 -18.5 -3.82098 | overlap 3248748 ACACCTTTCGCACTC GCCGCCTTCGC TTGACC GCGAAGGCGGC TTTCCGTTCCTTGTC kdgK 3248940 - 3249827 + | 2-dehydro-3-deoxygluconokinase protein TERM 2989 3249843 - 3249807 - T 84 -5 -5.1244 | opp_overlap 3249819 GTAGCAAGAGAAAAA CTCGGCTTGAGCGG CGGCTAAGC CCGCGCATGACGAG CGCGCAGCTATGCCA TERM 2990 3249819 - 3249877 + T 77 -12.4 -3.32268 | gap 2, opp_overlap 3249807 AAACTCGGCTTGAGC GGCGGCTA-AGCCCGCGCATGACG-AGC GCGCA GCTATGCCATGCGCGGGCGCTCCCCGCC TTATCGGCATGCTTG gstI 3250098 - 3249907 - | glutamine synthetase translation inhibitor protein glnII 3250529 - 3251569 + | glutamine synthetase II protein TERM 2991 3251576 - 3251613 + F 71 -4.6 -4.56775 | overlap 3251578 3251582 GCCGCCTAACAACCT CCCAAGCGGCGCCGGC CTCCCC GCCGGCGCCGTTCCTC TTTTTGCCCACGCCT TERM 2992 3251578 - 3251611 + F 83 -11.6 -3.90048 | overlap 3251576 3251582 CGCCTAACAACCTCC CAAGCGGCGCCGGC CTCCCC GCCGGCGCCGTTCC TCTTTTTGCCCACGC TERM 2993 3251582 - 3251607 + F 100 -19 -3.60925 | overlap 3251578 3251576 TAACAACCTCCCAAG CGGCGCCGGC CTCCCC GCCGGCGCCG TTCCTCTTTTTGCCC TERM 2994 3252966 - 3252947 - g 100 -16.4 -4.1021 | TCCGAGAAGCAGAAA GCCCGGCG AAAC CGCCGGGC CTCTCCCATCCGGAG RHE_CH03105 3251805 - 3252986 + | glycosyltransferase RHE_CH03106 3254006 - 3252993 - | putative lipase protein TERM 2995 3254508 - 3254488 - g 77 -3.8 -4.8622 | CGCCTGAAGGAAAAA GCGGTCGG CATTC CCGGCTGC ATCGTGGAAGCCAGC RHE_CH03107 3254143 - 3254610 + | MarR family transcriptional regulator TERM 2996 3254858 - 3254842 - T 74 -7.9 -4.24397 | overlap 3254854 ACAAGCGAATATAAA GGCGCCA ACC CAGCGCC CCGCCCCTTACGTCC engA 3256287 - 3254866 - | GTP-binding protein EngA RHE_CH03109 3256987 - 3256304 - | hypothetical protein RHE_CH03110 3257672 - 3257088 - | putative nitrate reductase protein TERM 2997 3258478 - 3258466 - g 79 -9.1 -4.18018 | GGGTCCCAGCGAAAA GCCGA TCA TCGGC ATGGACTACAATCTC RHE_CH03111 3257792 - 3258781 + | hypothetical protein bacA 3260259 - 3258994 - | transport protein TERM 2998 3260088 - 3260074 - G 81 -7.8 -4.45517 | AAAGTATCCATAAAA CCAGAG GTT CTCCGG CAACAGGAAAAATGA RHE_CH03113 3261503 - 3260385 - | putative transporter protein RHE_CH03114 3261738 - 3262313 + | PadR family transcriptional regulator RHE_CH03115 3264020 - 3262500 - | oxidoreductase protein TERM 2999 3262751 - 3262779 + g 90 -8.2 -4.8269 | GATCGACGGACTCGA TTTCGCCGGG CGCGACATA CTCGGCGAAA TTTTTGATCATTGTC TERM 3000 3263655 - 3263641 - G 88 -7.8 -4.84918 | overlap 3263642 GCGAGAAAGAGAAAA CCGTCG AGC CGACGA AAGTCGCACGAGATG map2 3265078 - 3264320 - | methionine aminopeptidase RHE_CH03117 3266178 - 3265117 - | oxidoreductase protein RHE_CH03118 3266565 - 3266197 - | hypothetical protein RHE_CH03119 3267350 - 3266883 - | hypothetical protein RHE_CH03120 3268700 - 3267441 - | RNA polymerase sigma factor protein (sigma-70) TERM 3001 3267637 - 3267619 - G 73 -6.6 -4.25053 | overlap 3267620 TGATAATAGAAATAA CCGTCGAG TTT CTCGCCGA GCGGATCGACGAGAT RHE_CH03121 3269071 - 3268697 - | hypothetical protein glpKch2 3270728 - 3269235 - | glycerol kinase protein bdhA 3270886 - 3271662 + | D-beta-hydroxybutyrate dehydrogenase protein TERM 3002 3272093 - 3272081 - g 91 -4.7 -5.33405 | CTGACGAAAGAAAAA CCCGG CCG CCGCG AGATCGAAAAGGCAC xdhA 3271691 - 3273157 + | xanthine dehydrogenase protein TERM 3003 3273724 - 3273697 - g 77 -12.7 -3.55444 | gap 1, overlap 3273698 CCGTCATCGCCGAAA CGCGCGACGTCG CCCGC CG-CGCCGCGCG GCTGGCGAAGATCGA TERM 3004 3274298 - 3274320 + G 78 -14.8 -3.09175 | CTCCTCGGATCTCTC GGGCCCGGTC ACC GACCGCGCCC TCTTCCATGCCGATT TERM 3005 3274693 - 3274677 - g 74 -5.8 -4.50976 | opp_overlap 3274688 CGCTATATCAGAAAA GGCATC GCCCT GACGCC GGTCAAATTCGGCAT xdhB 3273339 - 3275678 + | xanthine dehydrogenase protein TERM 3006 3276293 - 3276309 + G 70 -10.1 -3.65812 | TGCCGGCGAGATCGA GCGCCTC CCC GAGGTGC TTCTCTTCGGCGCCG xdhC 3275961 - 3276773 + | xanthine dehydrogenase protein RHE_CH03127 3277141 - 3277941 + | LysR family transcriptional regulator RHE_CH03128 3278328 - 3277996 - | hypothetical protein RHE_CH03129 3278664 - 3279902 + | hypothetical protein guaD 3279899 - 3281209 + | guanine deaminase lldD3 3281369 - 3282511 + | L-lactate dehydrogenase (cytochrome) protein RHE_CH03132 3283000 - 3282560 - | hypothetical protein RHE_CH03133 3284325 - 3282997 - | putative phosphatase protein TERM 3007 3283756 - 3283737 - G 73 -8.6 -4.08767 | gap 1, overlap 3283739 GCCAGGCTGCGAAAA GACCGAGCA GCA TGC-CGGTC GGCAGGTCCATGACG TERM 3008 3283848 - 3283834 - G 86 -12.8 -4.0492 | GAAGTGCCAGAGAAA CCGCGC CCG GCGCGG CAACCGGCCGCGCAG RHE_CH03134 3286120 - 3284336 - | putative hydrolase protein TERM 3009 3284852 - 3284827 - G 78 -15.5 -2.71681 | opp_overlap 3284831 3284837 3284840, overlap 3284829 3284832 CAATCGCGTCAAGGA CATAACGGCCG TGGC CGGCCGCTATG TCGAGCAGATGGGTG TERM 3010 3284847 - 3284832 - G 75 -11.8 -3.59946 | opp_overlap 3284831 3284837 3284840, overlap 3284829 3284827 GCGTCAAGGACATAA CGGCCG TGGC CGGCCG CTATGTCGAGCAGAT TERM 3011 3286052 - 3286033 - G 71 -9.2 -3.79687 | overlap 3286031 ACGTCCGATAAAACA GTCGCGCG CCAT CGTGCGAC ACGAATTCGGATTCA RHE_CH03135 3286319 - 3286930 + | CDP-alcohol phosphatidyltransferase protein TERM 3012 3287388 - 3287376 - g 73 -6.9 -4.36914 | CTCTTCGCCATAAAA GGCCC CTC GGACC TGACCATAGCTACGG TERM 3013 3288072 - 3288033 - g 79 -11.3 -3.83026 | gap 1, opp_overlap 3288062, overlap 3288037 GCCGGCCACAGCAAA CCGACGCCG-GGCGCAGG TGCTG CCCGCGCCGCCGCGGCAG TCTCGCGGCTGACCG RHE_CH03136 3287169 - 3288200 + | hypothetical protein RHE_CH03137 3288206 - 3288853 + | hypothetical protein TERM 3014 3289078 - 3289052 - gT 71 -11.5 -3.09492 | gap 1 GGGTCAACCTGAAGA CGCTGCGGCTGG AAGT CC-GCCGCGGCG AAGGCGATGCACTGA TERM 3015 3289641 - 3289621 - gT 76 -8.9 -4.17556 | GACATCGCCAACAAA TCCGCCGCG ACC CGCGCCGAA ACCGCCCAGCAGGAG TERM 3016 3290567 - 3290553 - gT 77 -11.4 -3.54424 | TGCCACTCCGGTAAA GCCGGT GGC ACCGGC CGCGGCTCCTGCAAA TERM 3017 3291287 - 3291272 - gT 77 -2.5 -5.00616 | GGGCCGCTGAAAAAA TCGCC GAGGTT GACGA TCTCCTCGATGCCCT allA 3292232 - 3291732 - | ureidoglycolate hydrolase RHE_CH03138 3288853 - 3291855 + | hypothetical protein RHE_CH03140 3292600 - 3292238 - | hypothetical protein RHE_CH03141 3293097 - 3292597 - | hypothetical protein RHE_CH03142 3294020 - 3293097 - | putative chitooligosaccharide deacetylase protein RHE_CH03143 3294841 - 3294134 - | hypothetical protein RHE_CH03144 3296059 - 3294956 - | D-amino acid oxidase protein TERM 3018 3295389 - 3295421 + g 72 -3.9 -4.56597 | GCGGCTTTCAATAGC GTCGCTTGCCCCTTC ACT GGCTGGCCGAGCGGC TTTTTCGGCCCCAGC TERM 3019 3296608 - 3296639 + G 70 -11.6 -3.14581 | gap 1, overlap 3296604 CGGCACTCGACGGCG TCAGGACGGCGAAGC CCG GCTTCGACG-CCTGG TATCTTGATGGCTTC TERM 3020 3296728 - 3296716 - g 74 -10.5 -3.8125 | opp_overlap 3296723, overlap 3296714 CGGTCAACGAAAAGA CCGCC GCC GGCGG AACCTTCGCCACTTA RHE_CH03145 3296202 - 3296900 + | hypothetical protein RHE_CH03146 3300312 - 3296911 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 3021 3298930 - 3298967 + g 76 -8.4 -4.20136 | gap 1, overlap 3298938 GGCATCGCGCATCAT TTCGC-CGACCCGCTCG AGCGC CGCGCGGGTCTCGTGAA TTTCCTTTTCCCGCT RHE_CH03147 3300613 - 3300960 + | hypothetical protein TERM 3022 3301046 - 3301013 - T 78 -14.6 -2.70932 | opp_overlap 3300990 3301014 3301015 CGCTGGCCGCAACGA GCCGATCTGGCGGG TGTTCG CCCGCCAGATCGAT TGCTTCCACTAGAGC TERM 3023 3301014 - 3301045 + T 90 -16.6 -3.35813 | opp_overlap 3301013, overlap 3300990 3301015 GCTGGCCGCAACGAG CCGATCTGGCGGGT GTTC GCCCGCCAGATCGA TTGCTTCCACTAGAG TERM 3024 3301015 - 3301044 + T 100 -20.1 -2.61274 | opp_overlap 3301013, overlap 3300990 3301014 CTGGCCGCAACGAGC CGATCTGGCGGGT GTTC GCCCGCCAGATCG ATTGCTTCCACTAGA RHE_CH03148 3302455 - 3301070 - | transporter protein TERM 3025 3302628 - 3302604 - R 76 -13.6 -2.73364 | opp_overlap 3302604 TTCCCATCGCAATGA CGCTCCTGCG GCATG CGCAGAAGCG TTGAATGCATCACTC TERM 3026 3302604 - 3302628 + r 71 -11.4 -3.08133 | opp_overlap 3302604 TTCCCATCGCAATGA CGCTCCTGCG GCATG CGCAGAAGCG TTGAATGCATCACTC dapAch4 3303585 - 3302638 - | dihydrodipicolinate synthase protein RHE_CH03150 3303747 - 3304775 + | LacI family transcription regulator RHE_CH03151 3304895 - 3305911 + | putative DNA alkylation repair protein TERM 3027 3305890 - 3305914 + F 76 -5.5 -4.82901 | opp_overlap 3305874 CTTCATCCTGATGAT GCCGTCGCGCG ACC CGAGCTAAGGC TTTTTGTGCACCGCA TERM 3028 3306170 - 3306148 - g 90 -13.4 -4.00124 | opp_overlap 3306140 3306168 GACGCCAGAATGAAA CCGGATCGCA TGG TGCGTTCCGG CGCTAGTCGTTGTGG TERM 3029 3307689 - 3307649 - g 71 -13.9 -2.53911 | CCAATGGCGAACCGA GCGGCCATCACCGCGGCAA CGG CCGCCACGCTCACGGCCGC CCGGCCCGCAAGCAC rhlE2 3306142 - 3307824 + | ATP-dependent RNA helicase protein TERM 3030 3307866 - 3307851 - f 71 -4.6 -4.5442 | opp_overlap 3307851, overlap 3307853 TTTGGAAGGAGAAAA GGCCGA ACTT TCGGTC TTGAATATTGGGAGG TERM 3031 3307880 - 3307908 + F 100 -11.8 -5.01535 | gap 1 TCTTGAATATTGGGA GGCCGGAGCATCT GGTG GGATG-TCCGGCC TTTTTCTCATTGTGG RHE_CH03153 3308142 - 3309131 + | AraC family transcriptional regulator TERM 3032 3309526 - 3309536 + G 73 -3.2 -4.75308 | overlap 3309500 3309533 AATATTCTTGCATCG TTGG CGA CCGA TTTTTGGCTGTTGCT RHE_CH03154 3309190 - 3310398 + | transporter, permease protein TERM 3033 3310481 - 3310454 - T 100 -22.8 -3.28791 | opp_overlap 3310444 AGGTGCTCTGGATAA GAGGTCGCCGGC AATT GCCGGCGACCTC CAATGCATCAGTCTA RHE_CH03155 3311516 - 3310617 - | hypothetical protein TERM 3034 3310976 - 3310991 + g 84 -2.4 -5.31275 | overlap 3310968 CAATGGCCCTGAGGT CGCCGG ATTG CAGGTG TTTTTTCTGGTAAAG TERM 3035 3311761 - 3311792 + H 70 -10.8 -3.29471 | opp_overlap 3311761, overlap 3311757 CTCGTTACCGTAGAA GTCATTCACGGCGT AGAC GCGCCGTGGCTGGC TTCCTGTGATAGGCA RHE_CH03156 3312066 - 3313460 + | hypothetical protein RHE_CH03157 3313493 - 3314401 + | hypothetical protein RHE_CH03158 3314414 - 3315238 + | putative transglutaminase protein RHE_CH03159 3315736 - 3315311 - | hypothetical protein TERM 3036 3316054 - 3316023 - R 80 -11.6 -3.72051 | opp_overlap 3316029, overlap 3316024 3316029 TCGAACAAGGGCAAA GGAAAAGGCGGAGC TCTC ACCCCGCCTTTTCA ATGATCCCAATCTAG TERM 3037 3316053 - 3316024 - R 81 -15.1 -2.82749 | opp_overlap 3316029, overlap 3316023 3316029 CGAACAAGGGCAAAG GAAAAGGCGGAGC TCTC ACCCCGCCTTTTC AATGATCCCAATCTA TERM 3038 3316048 - 3316029 - R 83 -9.2 -4.564 | opp_overlap 3316029, overlap 3316024 3316023 AAGGGCAAAGGAAAA GGCGGAGC TCTC ACCCCGCC TTTTCAATGATCCCA ilvDch2 3317822 - 3316083 - | dihydroxy-acid dehydratase TERM 3039 3317798 - 3317810 + g 74 -6.2 -4.49316 | GCGACCTCAGCCTGC GCGG CCATT CCGC TTTCTTCTTCATAAT RHE_CH03161 3319317 - 3317884 - | aldehyde dehydrogenase TERM 3040 3318276 - 3318298 + g 74 -4.8 -4.61231 | opp_overlap 3318267, overlap 3318277 AGATGACCTCGCCGC CGAAGGCG AGCTTGG CGCCTTCC TTTTTGCCGATCTCG TERM 3041 3319381 - 3319350 - R 93 -13.6 -3.86897 | overlap 3319353 TTTACCGTTTACAAA CACGGCCCGGCCGC GGAC GCAGCCAGGCCTCG AAAATCAGAGTTGCT TERM 3042 3319378 - 3319353 - R 82 -16.1 -2.71125 | overlap 3319350 ACCGTTTACAAACAC GGCCCGGCCGC GGAC GCAGCCAGGCC TCGAAAATCAGAGTT gguC 3320456 - 3319386 - | GguC protein TERM 3043 3319925 - 3319950 + g 72 -11.8 -3.29144 | opp_overlap 3319913 3319902 CGAGCGGCGCGCCGG GGGCGGCGGC GCCATA GCCGTTGCCC TTGTAGAACCACTCG TERM 3044 3320480 - 3320504 + r 75 -9.2 -4.13244 | gap 1 TGACTGCGAATGCCG GGGCCG-GCGC TGAC GCGCTCAGCCC TTGTTCTTGTTGTAG gguB 3321709 - 3320498 - | xylose ABC transporter, permease protein gguA 3323223 - 3321706 - | xylose ABC transporter, ATP-binding protein TERM 3045 3323334 - 3323295 - R 100 -16.4 -4.5442 | opp_overlap 3323289 3323295, overlap 3323296 3323297 3323300 TGGGTAATCATAAAA TCGAAGGCCGGAACCCGC AAGC GCGAGCTCCGGCCTCCAG CTTAACTTACTTCAG TERM 3046 3323333 - 3323296 - R 100 -19.9 -3.3217 | opp_overlap 3323295 3323289, overlap 3323295 3323297 3323300 GGGTAATCATAAAAT CGAAGGCCGGAACCCGC AAGC GCGAGCTCCGGCCTCCA GCTTAACTTACTTCA TERM 3047 3323332 - 3323297 - R 100 -21.2 -2.5882 | opp_overlap 3323295 3323289, overlap 3323296 3323295 3323300 GGTAATCATAAAATC GAAGGCCGGAACCCGC AAGC GCGAGCTCCGGCCTCC AGCTTAACTTACTTC TERM 3048 3323329 - 3323300 - R 100 -19.3 -3.43261 | opp_overlap 3323295 3323289, overlap 3323297 3323296 3323295 AATCATAAAATCGAA GGCCGGAACCCGC AAGC GCGAGCTCCGGCC TCCAGCTTAACTTAC chvE 3324405 - 3323341 - | xylose ABC transporter, substrate-binding protein gbpR 3324677 - 3325684 + | LysR family transcriptional regulator TERM 3049 3325681 - 3325665 - f 71 -9.3 -3.73224 | TCATCCTCGAGGAAA GCCGCAC GCA GGGCGGC TAGCGAACGACGCCG RHE_CH03167 3325799 - 3326254 + | hypothetical protein RHE_CH03168 3326550 - 3327413 + | hypothetical protein TERM 3050 3327493 - 3327533 + T 81 -12.7 -3.65046 | opp_overlap 3327492 3327491 3327518, overlap 3327497 AATCGAACAAAGATG TC-AAGCGCGGCGCGCATC GGAAA GA-GCGCGGCGCGCTTCGA TTGTTCGGCTGCGAC TERM 3051 3327497 - 3327528 + T 81 -13.7 -3.29013 | gap 1, opp_overlap 3327492 3327491 3327518, overlap 3327493 GAACAAAGATGTCAA GCGCGGCGCGCATC GGAAA GA-GCGCGGCGCGC TTCGATTGTTCGGCT RHE_CH03169 3327887 - 3327609 - | hypothetical protein idhA 3328045 - 3329037 + | myo-inositol 2-dehydrogenase protein TERM 3052 3329071 - 3329092 + T 100 -15.1 -4.37711 | opp_overlap 3329071, overlap 3329072 3329091 AAGTCGTGCATGAGA TGGCCGGGC AGAC GCCCGGCCG TTTTGCGTTTGATGG TERM 3053 3329092 - 3329071 - T 74 -12.9 -2.78715 | opp_overlap 3329071 3329072 3329091 AAGTCGTGCATGAGA TGGCCGGGC AGAC GCCCGGCCG TTTTGCGTTTGATGG TERM 3054 3329072 - 3329091 + T 90 -16.4 -3.21904 | opp_overlap 3329071, overlap 3329071 AGTCGTGCATGAGAT GGCCGGGC AGAC GCCCGGCC GTTTTGCGTTTGATG TERM 3055 3329542 - 3329507 - T 100 -14.1 -4.1466 | gap 1, opp_overlap 3329506, overlap 3329508 AGCTAACCCGGAAAA GCTCTAACCCCTCCCC CTTGT GGGGAGGGGTT-GAGG AGGGGTTTTGCGCTA TERM 3056 3329541 - 3329508 - T 89 -17.6 -3.08314 | gap 1, opp_overlap 3329506, overlap 3329507 GCTAACCCGGAAAAG CTCTAACCCCTCCCC CTTGT GGGGAGGGGTT-GAG GAGGGGTTTTGCGCT RHE_CH03171 3330778 - 3329555 - | transcriptional regulator protein TERM 3057 3330321 - 3330346 + g 78 -4.7 -4.75372 | opp_overlap 3330340, overlap 3330322 GAATCAACCAGGCCC TTGCTGCTGAT AGAG ATCAGCAGGAC TTTTTCCTGGGTAAT TERM 3058 3330807 - 3330856 + H 86 -7.4 -4.86385 | gap 3, opp_overlap 3330816, overlap 3330810 3330811 TCCTCCTGCTTGCCT TAGCCTAAAGCGCTTC--GCGATCT TTC AGATCGCTCGTAGCGCTTTAG-CTC TTTGTTTTTGCGCAT TERM 3059 3330810 - 3330854 + H 81 -10.2 -4.04587 | gap 2, opp_overlap 3330816, overlap 3330807 3330811 TCCTGCTTGCCTTAG CCTAAAGCGCTTC--GCGATCT TTC AGATCGCTCGTAGCGCTTTAGC TCTTTGTTTTTGCGC TERM 3060 3330811 - 3330853 + H 77 -13.7 -3.01668 | gap 2, opp_overlap 3330816, overlap 3330810 3330807 CCTGCTTGCCTTAGC CTAAAGCGCTTC--GCGATCT TTC AGATCGCTCGTAGCGCTTTAG CTCTTTGTTTTTGCG TERM 3061 3331020 - 3331002 - H 77 -10.4 -3.83205 | opp_overlap 3331009 3331010 ATCTCTGACATCAAA TTTCTCGA CTG TCGAGAAA ATAATCGAATTTTCC TERM 3062 3331966 - 3331930 - g 81 -13.7 -3.60098 | AGCGCGCAGCCGAAA TCGCTCTCGACCTTGCC GGC GGCAAGGACATGAGCAA GATCGATGGCGCACA xylF 3331104 - 3332144 + | xylose ABC transporter, substrate-binding protein TERM 3063 3332198 - 3332166 - f 100 -27.8 -3.8917 | TTTGAACTAGAATAA CCGGCGCCGCAGCG GAAAT CGCTGCGGCGCCGG ATGCGGACGGGAATT xylH 3332255 - 3333718 + | xylose ABC transporter, permease protein xylG 3333732 - 3334514 + | xylose ABC transporter, ATP-binding protein TERM 3064 3334544 - 3334569 + T 100 -16.1 -5.24129 | TCACCCGGCACCCCC CTCCGCCGCCC GCAA GGCCGGCGGAG TTTTTTATACGCACC RHE_CH03176 3335113 - 3334814 - | hypothetical protein TERM 3065 3335543 - 3335560 + G 100 -14.1 -5.25656 | opp_overlap 3335542 3335541 TTTGCCAGAAGAACT GCCCCGC CGAC GCGGGGC TTTTTTCGTCATTTT RHE_CH03177 3335463 - 3335720 + | hypothetical protein TERM 3066 3336098 - 3336084 - f 80 -5.6 -4.88407 | GGAGGCAATCAAAAA CCCGGA TCT CCCAGG TAGGTCGAAATTCGA TERM 3067 3336176 - 3336206 + F 79 -8.3 -4.41348 | gap 1 CAGGACGGCACCTGG CTCGGC-TGGCAGC GGTG GATGCCAAGCTGAG TTTATTTCCCGAGCC RHE_CH03178 3336259 - 3336474 + | hypothetical protein RHE_CH03179 3336523 - 3336981 + | hypothetical protein RHE_CH03180 3337307 - 3338374 + | potassium channel protein TERM 3068 3338794 - 3338809 + F 100 -11.8 -4.96501 | GCCCCATTCCTTGAT CCCCGC TCTT GCGGGG TTTCTTTTTGTGCAA TERM 3069 3338973 - 3338990 + F 100 -10.5 -5.60993 | opp_overlap 3338971 TCGTCCTCAACTATT GCCCCGT CTCG GCGGGGC TTTTTTTATCCAGAG TERM 3070 3339099 - 3339144 + F 73 -8.2 -4.15565 | gap 1, overlap 3339099 3339101 3339105 GCCGATTGTGAGGCC GG-CGAAGGCGATCAGCCCTG AAATC CCGAGCCGATCGCCTTCATCC TTTTCCACTCCTCGA TERM 3071 3341191 - 3341204 + G 72 -4.5 -4.56775 | CGGCCAACCAGGATT TGGCG CAAC TGCCA TTTTTCCCGCCCGAT RHE_CH03181 3339564 - 3341501 + | cell surface saccharide saccharide acetylase RHE_CH03182 3342549 - 3341647 - | acetyltransferase protein TERM 3072 3342631 - 3342643 + H 76 -5.5 -4.76075 | GACAGTTTTGTCCTG CTGGC TGC GTCAG TTTTCTTGCTCTGGT RHE_CH03183 3342838 - 3343239 + | hypothetical protein TERM 3073 3344126 - 3344103 - g 76 -13.2 -3.44284 | overlap 3344101 CCGCGACCAACAACA TGCTGCGCAA CCGC TCGCGCAGCA CCGGCGTCGCCAAGA RHE_CH03184 3343700 - 3345064 + | hypothetical protein TERM 3074 3345355 - 3345327 - T 70 -10.2 -3.31931 | opp_overlap 3345327, overlap 3345342 CCACACAATCAGCAA GGCGAGCCGATC AAACG AAACGGCCCGCC TCAGTTGCTCAACGA RHE_CH03185 3345869 - 3345459 - | hypothetical protein RHE_CH03186 3346247 - 3346573 + | hypothetical protein TERM 3075 3346661 - 3346693 + F 77 -12 -3.32769 | gap 1, opp_overlap 3346642, overlap 3346655 TCACTGCACGCTGCC GTGGCGTGCTC-GCC AAGA GACAGGGCACGCCAC TTGCTGATTTCGCGA TERM 3076 3347084 - 3347111 + F 73 -12.7 -2.57211 | overlap 3347083 GCCACGCCCCTCCAC CGCCCGAGATG GATCAA CAGCTCGGGCG CTTATCGGGAAGGGT TERM 3077 3347519 - 3347506 - g 78 -6.7 -4.62302 | overlap 3347507 GAAGACCGCGAAAAA GCGAT CTCG ATCGC AGCGATGATCGTCGG RHE_CH03187 3347317 - 3347586 + | hypothetical protein TERM 3078 3347687 - 3347632 - T 70 -10.4 -3.3197 | gap 1, opp_overlap 3347637, overlap 3347646 AGACGATGGCGACAA TCCCGCCGCGAACACCGCGATCATGTC ACT GGCATGATCGCGGCGGCCG-AACAGCA TCCAGCGCAGGCTCA TERM 3079 3347674 - 3347646 - T 89 -17.5 -3.01791 | opp_overlap 3347637, overlap 3347632 ATCCCGCCGCGAACA CCGCGATCATGTC ACT GGCATGATCGCGG CGGCCGAACAGCATC RHE_CH03188 3348267 - 3347725 - | acetyltransferase protein TERM 3080 3348162 - 3348178 + g 84 -8.1 -4.4009 | overlap 3348146 AAATCTGTTCGGGCG TCAGAAA AGG TTTCTGA TTTTCTGAGATGGCC RHE_CH03189 3349638 - 3348640 - | sugar ABC transporter, permease protein RHE_CH03190 3350524 - 3349673 - | sugar ABC transporter, ATP-binding protein RHE_CH03191 3350659 - 3351639 + | putative UDP-glucose 4-epimerase protein TERM 3081 3351646 - 3351665 + F 91 -12.8 -4.07568 | opp_overlap 3351646 3351645 3351643 CCCGGTTGATAACAG GGCGGGCG AAGG CGTCCGCC TTTTCAAAAAGGGAG RHE_CH03192 3351687 - 3352679 + | sugar ABC transporter, substrate-binding protein TERM 3082 3352690 - 3352715 + T 91 -16.2 -3.66178 | AGTGATGCCTCAATC GGAGCGCCCA CTCAGC TGGGCGCTCC TTTCGACTTCCGAAA ampR 3353586 - 3352684 - | LysR family transcriptional regulator TERM 3083 3353043 - 3353070 + g 77 -12.8 -3.57144 | gap 1 TCACTCCGGCGAGGT CT-GCCGGCGATC GGA GATCGTCGGCCAG TTTCGGGATGCAGAG TERM 3084 3354665 - 3354701 + G 90 -18 -2.91264 | gap 1, opp_overlap 3354656 TGAAGACCACCACGG TCGCCGCGCTGCAGCCG CCGA TGGC-GCCGCGCGGCGA TGTCTGGATCAACAA ampC 3353740 - 3354864 + | beta-lactamase RHE_CH03195 3355243 - 3356196 + | UDP-glucose 4-epimerase protein RHE_CH03196 3356282 - 3357460 + | glycosyltransferase TERM 3085 3359026 - 3359016 - g 84 -8.2 -4.49389 | overlap 3359017 ACCGCAGAAGGAAAA GCCG GCT CGGC AGGCGCAGTCGGTAG RHE_CH03197 3357439 - 3360453 + | putative polysaccharide deacetylase/methyltransferase protein TERM 3086 3360710 - 3360722 + GF 79 -10.5 -3.87373 | opp_overlap 3360698 CCACGGCATCAGGGA GGCGC TGG GCGCC TTTGTGGCGCCTATC RHE_CH03198 3360450 - 3361532 + | glycosyltransferase TERM 3087 3361756 - 3361769 + GF 100 -9.5 -5.00884 | TCCGGCTCTGCCATT GCCGG CCTC CCGGC TTTTTTGGGGGGCAT RHE_CH03199 3361426 - 3363285 + | putative surface saccharide ABC transporter, ATP-binding and permease protein RHE_CH03200 3363291 - 3364400 + | glycosyltransferase TERM 3088 3364648 - 3364619 - T 71 -11.4 -3.19192 | opp_overlap 3364617 3364616 GTGCAGGCAATCTAA GAGGATCCGCCA CCACCC CGGCGGGTCCTC AACTTTGCGAGGGCG RHE_CH03201 3365262 - 3365011 - | hypothetical protein RHE_CH03202 3365881 - 3365522 - | hypothetical protein TERM 3089 3366255 - 3366240 - R 75 -9 -4.05026 | TCCAAACTCAAACAA TGGCGA CGCC TCGCCA CCGGCTATGACAAGC RHE_CH03203 3366672 - 3366349 - | hypothetical protein RHE_CH03204 3367407 - 3366700 - | hypothetical protein RHE_CH03205 3368453 - 3367404 - | hypothetical protein TERM 3090 3368560 - 3368588 + r 74 -13.1 -2.84634 | opp_overlap 3368558 3368557 CGAGCTAAAAGAGGC TCGACGCGGGAAA GAG TGTCCCGCGGCGA TATGATCCTGTCGGA RHE_CH03206 3368846 - 3368634 - | hypothetical protein RHE_CH03207 3370711 - 3368867 - | hypothetical protein TERM 3091 3369825 - 3369838 + g 72 -3.7 -4.59773 | opp_overlap 3369809, overlap 3369824 3369823 3369831 GCGATCGAGTGCCTG GCGAC CACC GCCGC TTTTTCGGAGTCGCG TERM 3092 3370212 - 3370223 + g 72 -7.2 -4.11216 | opp_overlap 3370207 CTGGAAATGATGCGC GCCG CGCC CGGC TTTTGCACATCGGGC RHE_CH03208 3371146 - 3370721 - | transcriptional regulator protein RHE_CH03209 3371940 - 3371230 - | putative methyltransferase protein TERM 3093 3372320 - 3372347 + H 93 -12.6 -4.25104 | opp_overlap 3372340, overlap 3372321 GCTGAAATGCTGTTG ACGCGCGCTCGG CAAA CCGATCGCGCGC TTTTCATGAGGGCGC TERM 3094 3372321 - 3372346 + H 85 -16.1 -3.14848 | opp_overlap 3372340, overlap 3372320 CTGAAATGCTGTTGA CGCGCGCTCGG CAAA CCGATCGCGCG CTTTTCATGAGGGCG pssV 3372369 - 3373349 + | exopolysaccharide production protein TERM 3095 3374177 - 3374189 + G 74 -5.5 -4.4078 | opp_overlap 3374170 3374177 GAATGCAACGGAAAA GATGC CAG GCGTC TTTTCCTTCGGCCCC TERM 3096 3374561 - 3374547 - g 84 -2.1 -5.252 | CACTTGGAGAAAAAA TCCGA CGTGT TCGAA CAGAAGCGTGTGCGC TERM 3097 3374627 - 3374612 - g 71 -8.2 -3.85698 | TCTCGTCGCCAGAAA GACGCC GATC GGCGCC GTCGGGCTGCAATCG pssT1 3373935 - 3375008 + | endo-1,4-beta-xylanase protein TERM 3098 3375075 - 3375091 + G 76 -8 -4.33417 | ACGTGGAAAAATTTT TGCCTG CCAGC CAGGCA TTTGTTCTCAATCAG TERM 3099 3375364 - 3375322 - g 76 -6.1 -4.57569 | gap 1, opp_overlap 3375363 CCATTTCGGCAAAAA CGGCTATGTCATCGGTCCCC TGGC GCGGGCCGCCGGCA-AGCCG CTCGTCACGACGTTT TERM 3100 3375816 - 3375802 - g 79 -8.6 -4.28994 | CACGATCCATGAAAA TCTGTC GCA GACAGA GATAAGGGATCTGCT pssS 3375041 - 3376192 + | glycosyltransferase protein pssR 3376189 - 3376698 + | acetyltransferase protein TERM 3101 3377536 - 3377566 + G 74 -4.6 -4.56597 | opp_overlap 3377536 3377537 3377538, overlap 3377538 GGGCGCACGAAAAAA TGCTGGTCCAGCTG GAC CGGCTGAAACAGGA TTTTTCCAACAAGAC TERM 3102 3377557 - 3377536 - g 87 -5.7 -5.14563 | opp_overlap 3377536 3377538, overlap 3377537 3377538 GGGCGCACGAAAAAA TGCTGGTCC AGCT GGACCGGCT GAAACAGGATTTTTC TERM 3103 3377556 - 3377537 - g 71 -9.2 -3.68256 | opp_overlap 3377536 3377538, overlap 3377536 3377538 GGCGCACGAAAAAAT GCTGGTCC AGCT GGACCGGC TGAAACAGGATTTTT pssM 3376695 - 3377597 + | ketal pyruvate transferase protein pssL 3377698 - 3379200 + | exopolysaccharide polymerization and/or export protein pssK 3379231 - 3380262 + | exopolysaccharide polymerization protein TERM 3104 3380910 - 3380895 - g 70 -10.4 -3.64703 | GCGCCGCTAGCCAAA CTCCCC TTTC GGGGAG CGGTCTACCGGGTCG pssJ 3380274 - 3381095 + | galactosyltransferase protein TERM 3105 3381237 - 3381214 - g 74 -13.2 -3.32844 | gap 1, opp_overlap 3381211 3381214 CTTTTCATCTTACAA TGGCGCCAGCC GCC GGCTG-CGCCA TACTTTGGATTCCCT TERM 3106 3381214 - 3381237 + G 71 -13.2 -2.97588 | gap 1, opp_overlap 3381214, overlap 3381211 CTTTTCATCTTACAA TGGCGCCAGCC GCC GGCTG-CGCCA TACTTTGGATTCCCT pssI 3381173 - 3382117 + | glycosyltransferase protein TERM 3107 3382428 - 3382401 - g 71 -6.2 -4.34711 | overlap 3382403 3382420 3382422 AAAAGGAATGGAAAA TCGTCGCCGTCG ATAA CAACAGCAGCGA CAACACTGCAGCAGT TERM 3108 3382466 - 3382478 + G 81 -7.7 -4.41348 | opp_overlap 3382462 3382459 TCCTATAAGGAGCGG CTTCC GCT GGAAG TTTATTTCGAGCCAA pssH 3382289 - 3383254 + | glycosyltransferase protein pssG 3383244 - 3384320 + | glycosyltransferase protein pssF 3384317 - 3385201 + | glycosyltransferase protein pssC 3385198 - 3386181 + | glycosyltransferase protein RHE_CH03224 3386206 - 3387579 + | hypothetical protein TERM 3109 3387863 - 3387894 + G 83 -8 -4.58283 | gap 1, overlap 3387888 TGCTTCCCGATTGCA GCCGCGACTCGATCA CAA TG-TCGATTCGCTGC TTTTTCAGCGCCTTC pssD 3387691 - 3388149 + | glucuronosyltransferase protein pssE 3388146 - 3388622 + | glucuronosyltransferase protein RHE_CH03227 3389273 - 3388662 - | putative acyl-CoA thioesterase/lipase protein prsE 3390877 - 3389570 - | HlyD family protein secretion protein prsD 3392692 - 3390893 - | protease/lipase ABC transporter, ATP-binding and permease protein plyA3 3394758 - 3393139 - | polysaccharidase protein rapAch 3395448 - 3396155 + | autoaggregation protein TERM 3110 3396182 - 3396205 + T 74 -11.6 -3.34962 | opp_overlap 3396182 3396167 CCGTCGATGATGCAA CGCCCGCTGC TTGC GCGGCGGACG TTGTCGGCTATCAAC TERM 3111 3396205 - 3396182 - T 71 -11.6 -3.09516 | opp_overlap 3396182, overlap 3396167 CCGTCGATGATGCAA CGCCCGCTGC TTGC GCGGCGGACG TTGTCGGCTATCAAC RHE_CH03232 3397183 - 3396482 - | hypothetical protein TERM 3112 3397197 - 3397165 - G 74 -12.1 -3.53012 | opp_overlap 3397169 3397175, overlap 3397167 TTCTCGTGGGCGAAA CATACCGAATGCCGA GCA TCAGCTTTCGGTATA GTACCGCGAATAGCG TERM 3113 3397195 - 3397167 - G 74 -12.5 -3.34398 | opp_overlap 3397169 3397175, overlap 3397165 CTCGTGGGCGAAACA TACCGAATGCCGA GCA TCAGCTTTCGGTA TAGTACCGCGAATAG pssP 3399459 - 3397183 - | exopolysaccharide polymerization protein TERM 3114 3398318 - 3398334 + g 72 -4.3 -4.58283 | overlap 3398319 CCCGTTGCCTTATCG ACGCTGT CAC GCAGCGA TTTTTCGCGGGATTG pssO 3400224 - 3399511 - | exopolysaccharide inner membrane protein TERM 3115 3399856 - 3399814 - G 100 -19.8 -3.54741 | opp_overlap 3399844 CAGGACCTTTGCAAA GGCAGCGAGCAGCGGCCCGA GGT TCGGATCGGCGCTCGCCGCC TCGGCGACAGCCTTT TERM 3116 3399844 - 3399868 + g 84 -11.3 -4.21194 | opp_overlap 3399814 CCCGAGGTTCGGATC GGCGCTCGCCG CCT CGGCGACAGCC TTTTCGATAATCAGC TERM 3117 3400301 - 3400264 - R 70 -11.9 -2.62613 | opp_overlap 3400266 3400267 3400268, overlap 3400263 3400261 CTCTATCGGAAACAG GCCACCGGCACCGATCG TTTG CGATCGGCGCCGGCTAT TTCCCCAATCAGCGC TERM 3118 3400266 - 3400300 + r 74 -10.7 -3.55444 | gap 1, opp_overlap 3400264 3400263 3400261, overlap 3400267 3400268 CTATCGGAAACAGGC CA-CCGGCACCGATCG TTTG CGATCGGCGCCGGCTA TTTCCCCAATCAGCG TERM 3119 3400267 - 3400298 + r 87 -15.8 -3.35597 | opp_overlap 3400264 3400263 3400261, overlap 3400266 3400268 TATCGGAAACAGGCC ACCGGCACCGATCG TTTG CGATCGGCGCCGGC TATTTCCCCAATCAG TERM 3120 3400268 - 3400297 + r 95 -19.3 -2.61144 | opp_overlap 3400264 3400263 3400261, overlap 3400267 3400266 ATCGGAAACAGGCCA CCGGCACCGATCG TTTG CGATCGGCGCCGG CTATTTCCCCAATCA pssN 3401521 - 3400310 - | exopolysaccharide export protein TERM 3121 3400764 - 3400793 + g 72 -4.3 -4.57073 | gap 1 ACCGAGATCGTATCA TCCGGCGCGACA TAGATGT TCTC-CGCCGGA TTTTTCAACAGCGTA pssT2 3403232 - 3401823 - | endo-1,4-beta-xylanase (exopolysaccharide export) protein TERM 3122 3402052 - 3402032 - G 71 -6.1 -4.36914 | overlap 3402044 GCCCGCGCCAGAAAA CCCTCGCAA GCA CTGCGAAAG CAAGAAGCGTCGCAA TERM 3123 3403391 - 3403360 - H 71 -7.2 -4.13014 | overlap 3403361 TCCACATCGTTAAAA TTGTCGCGAATGGC TTAA GCCAATCGAGACAG GACCCCGCTTATGCT TERM 3124 3403693 - 3403670 - g 72 -3.8 -4.59109 | gap 1 TATATCTCCGAAAAA GGC-AAGATCG TTC CGCCCTTCGCC CAGGTGCTGTTCTGC RHE_CH03237 3403535 - 3404134 + | hypothetical protein TERM 3125 3404181 - 3404209 + F 70 -9.6 -3.46602 | gap 1, opp_overlap 3404181 CATTTCCGGATTGAA GTCGAGCCGGCTC TCAC GAAC-GGCTCGAC TTGTCATATCGCCCA TERM 3126 3404209 - 3404181 - f 74 -11.8 -3.05596 | gap 1, opp_overlap 3404181 CATTTCCGGATTGAA GTCGAGCCGGCTC TCAC GAAC-GGCTCGAC TTGTCATATCGCCCA TERM 3127 3404225 - 3404236 + F 70 -3 -4.8048 | TTGTCATATCGCCCA CATA AACC TATG TTTTTGCTGTCGAGC TERM 3128 3404349 - 3404379 + F 86 -18.4 -2.69202 | opp_overlap 3404352, overlap 3404352 CAGATTGAGTATGAC GAACGCCATGCTGC GAC GCAGCATGACGTTC TACTCTAATGATTTG TERM 3129 3404352 - 3404376 + F 85 -14.3 -3.48668 | opp_overlap 3404352, overlap 3404349 ATTGAGTATGACGAA CGCCATGCTGC GAC GCAGCATGACG TTCTACTCTAATGAT TERM 3130 3404376 - 3404352 - f 90 -16.5 -3.23395 | opp_overlap 3404352 3404349 ATTGAGTATGACGAA CGCCATGCTGC GAC GCAGCATGACG TTCTACTCTAATGAT rkpK 3404415 - 3405722 + | UDP-glucose 6-dehydrogenase protein TERM 3131 3405749 - 3405780 + T 100 -12.9 -5.41143 | overlap 3405751 3405753 AATTATGTGAACCTT CTCACGCCGCGGG CACAAT CCCGCGGCGTCTG TTTTTTTGAAGCGTG TERM 3132 3405751 - 3405778 + T 100 -14.1 -4.34482 | overlap 3405749 3405753 TTATGTGAACCTTCT CACGCCGCGGG CACAAT CCCGCGGCGTC TGTTTTTTTGAAGCG TERM 3133 3405753 - 3405776 + T 100 -16.7 -3.76885 | overlap 3405751 3405749 ATGTGAACCTTCTCA CGCCGCGGG CACAAT CCCGCGGCG TCTGTTTTTTTGAAG RHE_CH03239 3406686 - 3405904 - | serine/threonine specific protein phosphatase protein TERM 3134 3407110 - 3407128 + r 79 -11.8 -3.58905 | opp_overlap 3407109 3407106 ATTTTAGTACATGAT GCTTAACC TCT GGTTAAGC TTATGTCTACGGGAT TERM 3135 3407763 - 3407736 - R 95 -19.8 -2.71364 | opp_overlap 3407737, overlap 3407721 TCATCGTTGCAACGA TGCGGGGCCGGC ATTC GCCGGCCCCGCT TGCTGTCTTGGCCAC TERM 3136 3407737 - 3407762 + r 100 -23.3 -3.37493 | opp_overlap 3407721 3407736 CATCGTTGCAACGAT GCGGGGCCGGC ATTC GCCGGCCCCGC TTGCTGTCTTGGCCA RHE_CH03240 3408398 - 3407793 - | esterase/lipase/thioesterase protein TERM 3137 3408355 - 3408381 + g 75 -13.7 -2.97735 | overlap 3408350 AGAATAGGTTTGTCA GGTGCACCGGC ATGCA GCCGGTGCACA TATCCTGTTTCGGTC RHE_CH03241 3409341 - 3408409 - | dioxygenase protein TERM 3138 3409358 - 3409374 + r 86 -10.8 -4.28994 | TGAGACCCCTTTCTT GCCCGC CGTTC GCGGGC TTTTGATGGATCATA ung 3410106 - 3409477 - | uracil-DNA glycosylase noeK 3410408 - 3411832 + | phosphomannomutase protein TERM 3139 3412165 - 3412139 - g 75 -13.6 -3.01712 | CCGTTGCCCGCAACA CCGCCGCAGCGG TCG CCGCCGCCGCGA CGCTCGCCGCCGAGC TERM 3140 3412426 - 3412404 - g 78 -9.9 -4.07568 | gap 1, overlap 3412405 3412419 CCGCTTCGTGGAAAA GC-CGGCCTT GGAC AAGGCCGAGC AGATGCTGGCCGATG noeJ 3411835 - 3413295 + | mannose-1-phosphate guanylyltransferase (GDP) protein RHE_CH03245 3413430 - 3413735 + | hypothetical protein RHE_CH03246 3414735 - 3413779 - | putative endonuclease/exonuclease/phosphatase family protein TERM 3141 3414476 - 3414456 - G 77 -4.5 -4.82667 | opp_overlap 3414456, overlap 3414458 TCATCAGACGAAAAA GCGGCGCCG TTC CCGCACCCC TGTCGTCCTCCGCAA lpsL 3414996 - 3416012 + | UDP-glucuronic acid epimerase protein TERM 3142 3416020 - 3416066 + F 84 -9.5 -4.386 | gap 1, overlap 3416009 3416008 3416021 ATGCCTGAAGCGCGT TGCTAGAGCGGTTCAGC-TTTC CACG GAAGCGCAGAACCGCTCTAACC TTTTGTACGCAATTC TERM 3143 3416021 - 3416065 + F 78 -13 -3.22678 | gap 1, overlap 3416009 3416008 3416020 TGCCTGAAGCGCGTT GCTAGAGCGGTTCAGC-TTTC CACG GAAGCGCAGAACCGCTCTAAC CTTTTGTACGCAATT RHE_CH03248 3416092 - 3416601 + | hypothetical protein TERM 3144 3417020 - 3417009 - f 77 -3 -5.0916 | opp_overlap 3417009 CTTGGAACATAAAAA TCAA TCGA TTGA CTTATTCCAGTAGAG TERM 3145 3417579 - 3417592 + G 76 -8.1 -4.15565 | opp_overlap 3417578 CCGGCGTCCGAACAT GTGCG CCTG CGCAC TTTTAACCTCGTCGG RHE_CH03249 3417051 - 3417755 + | TetR family transcriptional regulator TERM 3146 3418447 - 3418429 - g 78 -10.2 -4.07568 | CCGGGTGCGGGAAAA CGGCGCGA TCG TCTCGCCG GCCGATACCGTCTTC RHE_CH03250 3417752 - 3418765 + | hypothetical protein TERM 3147 3419025 - 3419004 - g 89 -12.9 -4.1337 | opp_overlap 3419023 CGACACCAGAAAGAA CGCCGCCGG CATT CAGGCGGCG ATCGGCTACATGCCG TERM 3148 3419263 - 3419250 - g 72 -3.7 -4.56597 | CGCGCTTCTGAAAAA GCCGC GCCT GCTGC TGCTCGACGAACCCG RHE_CH03251 3418762 - 3420507 + | ABC transporter ATP-binding protein TERM 3149 3421273 - 3421287 + G 74 -9.2 -3.91144 | GCGTGCCGTTCCGCG GCTCGG TCG CCGGGC TTTATGCCCTATCGG RHE_CH03252 3420504 - 3421631 + | ABC transporter permease RHE_CH03253 3421633 - 3422745 + | ABC transporter permease RHE_CH03254 3422876 - 3423271 + | hypothetical protein TERM 3150 3423312 - 3423331 + T 100 -12.8 -4.94992 | overlap 3423309 GGCTTGACTACCTCG GGCCCCGC TTCG GTGGGGCC TTTTTCTACGTTTGC TERM 3151 3423399 - 3423382 - T 81 -12.7 -3.55071 | opp_overlap 3423381 CCATAGCGCGGCAAA CCGCCGT CTGA ACGGCGG CTTCCATATCCCAAG thuBch 3424464 - 3423421 - | myo-inositol 2-dehydrogenase protein thuAch 3425259 - 3424474 - | trehalosemaltose utilization protein TERM 3152 3425344 - 3425329 - R 79 -7.5 -4.56775 | overlap 3425315 AGCGCTTTGGAAAAA GGCGC TGAGGT GCGCC TCGATCTCCTCCACG RHE_CH03257 3425794 - 3425453 - | methyl viologen/ethidium resistance transmembrane protein TERM 3153 3425678 - 3425657 - G 73 -6.5 -4.29738 | gap 1, overlap 3425658 3425673 3425674 CGACAGGCAGTAAAA CGCCGC-CGC ATA GCAAGCGACG ACAAGGGCCGTCGGC RHE_CH03258 3426442 - 3425813 - | TetR family transcriptional regulator TERM 3154 3426392 - 3426403 + g 71 -5.8 -4.36914 | opp_overlap 3426392 3426390 AAGATTATAAAGATA CCGT CCGG ACGG TTTTGTCAAGGAGAA TERM 3155 3426772 - 3426751 - g 77 -13.7 -3.25823 | opp_overlap 3426766, overlap 3426754 GCCGCTCTATACCAA CAAGCGCGG CCAT CCGCGCCTG CGCAGCCGCCATTTT TERM 3156 3426769 - 3426754 - g 78 -11.8 -3.7732 | opp_overlap 3426766, overlap 3426751 GCTCTATACCAACAA GCGCGG CCAT CCGCGC CTGCGCAGCCGCCAT RHE_CH03259 3426545 - 3426952 + | putative globin-like protein RHE_CH03260 3426949 - 3427320 + | hypothetical protein RHE_CH03261 3427688 - 3427317 - | putative bleomycin resistance protein RHE_CH03262 3427999 - 3427685 - | hypothetical protein RHE_CH03263 3428281 - 3428009 - | hypothetical protein RHE_CH03264 3428685 - 3428278 - | hypothetical protein RHE_CH03265 3430119 - 3428794 - | putative membrane protein, transduces energy to outer membrane receptors TERM 3157 3430175 - 3430147 - R 74 -11.1 -3.37487 | gap 1, opp_overlap 3430147 3430150, overlap 3430145 3430150 GGACAGCCTGAAACA TATCCGCCGGGG TTCCAT CCCCGGCG-ATA TCTTAGCCCTCGAAA TERM 3158 3430147 - 3430175 + r 70 -11.1 -3.04144 | gap 1, opp_overlap 3430147 3430145 3430150, overlap 3430150 GGACAGCCTGAAACA TATCCGCCGGGG TTCCAT CCCCGGCG-ATA TCTTAGCCCTCGAAA TERM 3159 3430173 - 3430150 - R 72 -13.1 -2.54801 | opp_overlap 3430147 3430150, overlap 3430147 3430145 CAGCCTGAAACATAT CCGCCGGGG TTCCAT CCCCGGCGA TATCTTAGCCCTCGA RHE_CH03266 3430603 - 3430178 - | hypothetical protein hmuP 3430781 - 3430963 + | hemin transport system, hemin uptake protein hmuS 3430983 - 3432032 + | hemin transport system, degrading protein TERM 3160 3432610 - 3432592 - g 72 -8 -4.11216 | opp_overlap 3432599 3432604 3432605 CGCCGATGCCGAAAA GCGCCCTG AGA CCGAGCGC AAGCGCGTTCTCTTC hmuT 3432044 - 3432973 + | hemin transport system, hemin-binding protein hmuU 3432976 - 3434088 + | hemin transport system, permease protein hmuV 3434110 - 3434904 + | hemin importer ATP-binding subunit RHE_CH03272 3435052 - 3435396 + | hypothetical protein TERM 3161 3435519 - 3435543 + T 81 -14.9 -2.78679 | overlap 3435519 CCTCCTCACAGCCTA TGCGCTGGCGG TGG CCGCCGGCGCC ATTTGGCTCGCCGGC TERM 3162 3435519 - 3435544 + T 84 -13.3 -3.64703 | gap 1, overlap 3435519 CCTCCTCACAGCCTA TG-CGCTGGCGG TGG CCGCCGGCGCCA TTTGGCTCGCCGGCA TERM 3163 3435921 - 3435876 - T 79 -8.4 -4.44548 | gap 1, overlap 3435878 TACACGCAAGCAAAA GACT-CTCCCTCATTCCTGTG ACAGG CACAGGAACGAAGGAGGAGGG GTAGTGCCTCGAATA TERM 3164 3435919 - 3435878 - T 95 -15.4 -3.82321 | gap 1, overlap 3435876 CACGCAAGCAAAAGA CT-CTCCCTCATTCCTGTG ACAGG CACAGGAACGAAGGAGGAG GGGTAGTGCCTCGAA rpoE4 3436571 - 3436014 - | RNA polymerase sigma factor RHE_CH03274 3436787 - 3436581 - | hypothetical protein TERM 3165 3436660 - 3436648 - G 81 -7.7 -4.40572 | opp_overlap 3436647 3436653 AGAAGGTCGAGAAAA CGATC GGG GATCG CCTCTTCCTGTGCCG TERM 3166 3436969 - 3436951 - H 91 -4.5 -5.60993 | opp_overlap 3436951, overlap 3436933 GGCGCGACAAAAAAA GTTCCTG CCGTT CCGGAAC TTTTTTACCAAGGCA TERM 3167 3436951 - 3436969 + H 78 -4.5 -5.00616 | opp_overlap 3436933 3436951 GGCGCGACAAAAAAA GTTCCTG CCGTT CCGGAAC TTTTTTACCAAGGCA TERM 3168 3437603 - 3437586 - g 73 -6.3 -4.37544 | gap 1, overlap 3437587 3437588 CTACAACAAGACAAA GCCGAGCA TGG TGCTC-GC TGACATCCAGCTTGC tcrX 3437035 - 3437829 + | two-component response regulator TERM 3169 3437894 - 3437870 - f 70 -11.3 -2.9415 | opp_overlap 3437885, overlap 3437859 3437862 CAAACGACCGAGACA GGCGTTCCGGT GCT ACCGGGCCGCC CCGATGAGTTTAACG TERM 3170 3438146 - 3438159 + G 74 -2.3 -4.87665 | overlap 3438142 CGAAAATCTGCCGCC GCACT TCGC AGCGC TTTTTATGCCTGGCG tcrY 3438060 - 3439013 + | two-component sensor histidine kinase protein TERM 3171 3439078 - 3439050 - f 100 -17.5 -5.00895 | opp_overlap 3439050 3439052 CCGACGACAGAAAAA CAGCCGGTGCG AGGGCGG CGCACCGGCTG TCTTCACTCACCGGG TERM 3172 3439050 - 3439078 + F 89 -17.5 -3.08679 | opp_overlap 3439050, overlap 3439052 CCGACGACAGAAAAA CAGCCGGTGCG AGGGCGG CGCACCGGCTG TCTTCACTCACCGGG TERM 3173 3439052 - 3439076 + F 81 -14.3 -3.10344 | opp_overlap 3439050, overlap 3439050 GACGACAGAAAAACA GCCGGTGCG AGGGCGG CGCACCGGC TGTCTTCACTCACCG TERM 3174 3439322 - 3439309 - f 86 -5.9 -5.055 | TTAATCTTTAAAAAA CCGGC ACTT ACCGG AACGCCTCCGAGGAG TERM 3175 3440171 - 3440195 + G 74 -9.9 -3.76402 | opp_overlap 3440170 3440169, overlap 3440175 TCGAGGGCGAAAACC TGGCCGGCGTC GAC GACGCCGTCGA TTTCATCGCTGCGCT TERM 3176 3440175 - 3440191 + G 71 -13.7 -2.68279 | opp_overlap 3440170 3440169, overlap 3440171 GGGCGAAAACCTGGC CGGCGTC GAC GACGCCG TCGATTTCATCGCTG TERM 3177 3440753 - 3440779 + G 93 -18 -3.33696 | opp_overlap 3440761 TCCATCGCGCCCTCT CCGCAACAGCCG CTC CGGCTGTCGCGG TTGCTTGAAGGGGAG RHE_CH03277 3439426 - 3440787 + | putative oxidoreductase RHE_CH03278 3440803 - 3442116 + | dihydropyrimidine dehydrogenase TERM 3178 3442123 - 3442159 + F 91 -18.1 -3.33969 | opp_overlap 3442117 3442141, overlap 3442124 GCGGAATGACGGCTT TGCAGTGCCGCGGAC AAGCTCG GTTCGCGGCACTGCG TTGTGCCATAAATTC TERM 3179 3442124 - 3442158 + F 95 -19.4 -2.6006 | opp_overlap 3442117 3442141, overlap 3442123 CGGAATGACGGCTTT GCAGTGCCGCGGAC AAGCTCG GTTCGCGGCACTGC GTTGTGCCATAAATT TERM 3180 3442565 - 3442588 + G 83 -14.6 -3.40403 | CCTCGCGTTTTCAGC CGGATGGTCC ATCG GGACCGTCCG TTGTCGTCGACCCGG TERM 3181 3444024 - 3444034 + G 72 -2.4 -4.72272 | CGTGATCGACAGTCT GCCG GAT CCGC TTTTTGCTCCACCAC RHE_CH03279 3442276 - 3444264 + | putative 1,4-alpha-glucan branching enzyme protein RHE_CH03280 3444768 - 3444334 - | hypothetical protein RHE_CH03281 3445237 - 3444833 - | putative dehydrogenase protein TERM 3182 3446697 - 3446712 + G 83 -7.5 -4.56775 | opp_overlap 3446690 CGATGCAATGGAGCG CCGCC CCCTAT GGCGG TTTTTCCACAGGCGT malL 3445415 - 3447094 + | oligosaccharide alpha-1,6-glucosidase protein ftrA 3448203 - 3447193 - | transcriptional activator FtrA TERM 3183 3447408 - 3447435 + g 93 -7.6 -5.00616 | overlap 3447434 TCGCTTCAAAGCGGC GCTGGAATGTGC GCAT GCTCATGCCGGC TTTTTTGGCGAGCAG TERM 3184 3447849 - 3447887 + g 75 -13.9 -3.05046 | gap 1, opp_overlap 3447843 3447834 3447824, overlap 3447851 GCGACATGATGCGCG CGCCGCGCTGATGCGCTG CTCT CAGCGCATTGGCGAG-CG GTTTTGGCACCGTCG TERM 3185 3447851 - 3447888 + g 82 -11.4 -4.08767 | gap 2, opp_overlap 3447843 3447834 3447824, overlap 3447849 GACATGATGCGCGCG CCG--CGCTGATGCGCTG CTCT CAGCGCATTGGCGAGCGG TTTTGGCACCGTCGC RHE_CH03284 3448266 - 3448676 + | putative rhodanese-related sulfurtransferase protein TERM 3186 3448680 - 3448711 + TF 70 -10.8 -3.35597 | gap 1, opp_overlap 3448682, overlap 3448677 3448681 GCTGCCGAATAGCAG AACGCTCCCCTC-CC TGA GGCGAGGGGAGCGCA TGTTTCAAAACTCGA TERM 3187 3448681 - 3448710 + TF 78 -14.3 -2.61144 | gap 1, opp_overlap 3448682, overlap 3448680 3448677 CTGCCGAATAGCAGA ACGCTCCCCTC-CC TGA GGCGAGGGGAGCGC ATGTTTCAAAACTCG TERM 3188 3448709 - 3448682 - Tf 95 -17.8 -3.52073 | gap 1, opp_overlap 3448681 3448680 3448677 TGCCGAATAGCAGAA CGCTCCCCTC-CC TGA GGCGAGGGGAGCG CATGTTTCAAAACTC RHE_CH03285 3449738 - 3448716 - | alcohol dehydrogenase protein TERM 3189 3448812 - 3448796 - Gf 70 -12.3 -2.64912 | overlap 3448795 CCTCGAAGGCATAAC GCCTGTC GAC GACAGGC TTGAGCCCGGTCTGG TERM 3190 3448923 - 3448909 - Gf 73 -8.5 -4.07618 | overlap 3448891 GCCTTAAGAAGCAAA GGCGC TACGG GCGCC GAGACATCAAAACCC TERM 3191 3449109 - 3449133 + gF 77 -8.6 -4.21462 | opp_overlap 3449104 GATCAGATGATCGGC GC-CGAGCGCGG ACG CC-CGCTCGAGC TTTTCGGTGCTGCCT TERM 3192 3449477 - 3449489 + gF 74 -10.5 -3.65902 | opp_overlap 3449466 3449477 AAAAGGTGGAGATCA CCCGG TCG CCGGG TTTAAATCGGGTGAC TERM 3193 3449742 - 3449771 + GH 70 -11.5 -3.00476 | TGTGGTTTGCATCTG TCTGCTCCTTCTC GATT GAGGAGCAGCAGA TATATCGTTGAAAAT RHE_CH03286 3449715 - 3450740 + | LysR family transcriptional regulator TERM 3194 3450771 - 3450744 - fH 75 -12.6 -3.09878 | CTGATGGATTGAAGA GCGCTCGCGCCA CAGG TGGCGCCTGCGC TTGGGCAGAGCAGTG TERM 3195 3450978 - 3450999 + G 70 -10.1 -3.61232 | overlap 3450977 CCTTCTTCCGTGAAG GCGCGCG GGTGCAGG CGCGCGC TCTTTATCTGCGCAA RHE_CH03287 3450839 - 3451270 + | hypothetical protein RHE_CH03289 3452195 - 3451545 - | TetR family transcriptional regulator TERM 3196 3451602 - 3451586 - Gg 73 -6.5 -4.2558 | overlap 3451599 GACCGCCGATGAAAA GCTGTTC CAG GAACCGC GCCGCGTCTTCGAAC RHE_CH03288 3451273 - 3451680 + | two-component response regulator protein TERM 3197 3452189 - 3452201 + gF 70 -7.7 -3.96618 | TCGCTGCTCTCGGAA TAGCC ATC GGCTA TTGTTTCCCCTTGAA TERM 3198 3452472 - 3452446 - fH 74 -12.3 -3.07787 | AAGACCACGGGAACA GGCAGGCATGC CCCTT GCATGACTGCC GCAAACAGGTGAGGG TERM 3199 3452675 - 3452651 - g 78 -3.5 -5.00884 | AGCCTCTTTAAAAAA TGGTGCGAC GAAGCGG GCCTCACCA TGGGCGTCGACCAGA amaB 3452495 - 3453748 + | allantoate amidohydrolase RHE_CH03291 3453748 - 3454338 + | hypothetical protein TERM 3200 3454899 - 3454883 - g 72 -7.9 -4.11216 | overlap 3454884 GGTGCATGCCGAAAA CGGCGAC GTC GTCGCCT CGATGTCGGCGAAGC dht 3454335 - 3455789 + | dihydropyrimidinase RHE_CH03293 3456261 - 3455848 - | hypothetical protein TERM 3201 3456305 - 3456278 - H 72 -9.8 -3.61398 | gap 1, overlap 3456279 TTCTTCCTCCAAGAA TTGCGCCGCCGGC AGG GCCGGCAGCG-AT GGTAACATGCAAACC TERM 3202 3456304 - 3456279 - H 76 -13.3 -2.76696 | gap 1, overlap 3456278 TCTTCCTCCAAGAAT TGCGCCGCCGGC AGG GCCGGCAGCG-A TGGTAACATGCAAAC RHE_CH03294 3456356 - 3457141 + | nitrate/sulfonate ABC transporter, ATP-binding protein RHE_CH03295 3457376 - 3458305 + | nitrate/sulfonate ABC transporter, permease protein RHE_CH03296 3458302 - 3459429 + | nitrate/sulfonate ABC transporter, permease protein TERM 3203 3459869 - 3459887 + G 86 -8.8 -4.65895 | overlap 3459886 GGCCGATTTCAAGGG CCATACGC TCG GCGTCTGG TTTTTCGGTAACGAA RHE_CH03297 3459525 - 3460460 + | nitrate/sulfonate ABC transporter, substrate-binding protein TERM 3204 3460478 - 3460511 + F 88 -7.3 -5.03715 | opp_overlap 3460472 3460483, overlap 3460479 3460483 ACGGCTAAATTTGAG GCAAACGCGCGGGGA ATAT TTCCCGCGCGTTCCA TTTTTTCCCCCTGAT TERM 3205 3460479 - 3460510 + F 74 -10.8 -3.61506 | opp_overlap 3460472 3460483, overlap 3460478 3460483 CGGCTAAATTTGAGG CAAACGCGCGGGGA ATAT TTCCCGCGCGTTCC ATTTTTTCCCCCTGA TERM 3206 3460483 - 3460506 + F 90 -16 -3.52177 | opp_overlap 3460483, overlap 3460479 3460478 TAAATTTGAGGCAAA CGCGCGGGGA ATAT TTCCCGCGCG TTCCATTTTTTCCCC TERM 3207 3460506 - 3460483 - f 84 -13.8 -3.67588 | opp_overlap 3460483 3460479 3460478 TAAATTTGAGGCAAA CGCGCGGGGA ATAT TTCCCGCGCG TTCCATTTTTTCCCC TERM 3208 3460899 - 3460920 + G 70 -7.2 -4.07568 | overlap 3460894 CATCCTTTTTGCAGC GGCGCTGG TTGCAT CCACCGCC TTTTCGCAGGAGGCG TERM 3209 3461485 - 3461471 - g 71 -12.8 -3.06492 | opp_overlap 3461471 3461448 GCACCGACGTGAAGA CGCCGG TTG CCGGCG TGGTGTCTGCAAAGA RHE_CH03298 3460849 - 3462039 + | HlyD family protein secretion protein RHE_CH03299 3462053 - 3465373 + | acriflavin resistance efflux transporter TERM 3210 3465419 - 3465394 - T 100 -21.9 -4.4009 | opp_overlap 3465394 GCCCAGGTTAGAAAA CGGGCCGGGAG TGAT CTCCCGGCCCG TTTCTTCTTTCCGAC TERM 3211 3465394 - 3465419 + T 100 -21.9 -4.56978 | opp_overlap 3465394 GCCCAGGTTAGAAAA CGGGCCGGGAG TGAT CTCCCGGCCCG TTTCTTCTTTCCGAC ureG 3466083 - 3465472 - | urease accessory protein ureF 3466843 - 3466172 - | urease accessory protein ureE 3467535 - 3466849 - | urease accessory protein RHE_CH03303 3468370 - 3467519 - | urease-associated protein TERM 3212 3468006 - 3467982 - G 73 -8.5 -4.08767 | opp_overlap 3468003, overlap 3467996 TTGATCGCCTTAAAA CGGTCGACATC GAA GATGACGAGCG AGGCATCGCCTTCGG RHE_CH03304 3469385 - 3468714 - | urease-associated protein ureC 3471130 - 3469418 - | urease subunit alpha RHE_CH03306 3471772 - 3471134 - | urease-associated protein TERM 3213 3471724 - 3471699 - G 72 -3.9 -4.56093 | gap 1, opp_overlap 3471701, overlap 3471700 3471701 AAGCGAATGACAAAA TCGGC-GGCATC GAT GATGCCTGCCTC TCTCTCTCCAACCTC RHE_CH03307 3472178 - 3471774 - | urease-associated protein ureB 3472501 - 3472196 - | urease subunit beta RHE_CH03309 3472763 - 3472512 - | urease-associated protein ureA 3473075 - 3472773 - | urease subunit gamma ureD 3473775 - 3473104 - | urease accessory protein RHE_CH03312 3474768 - 3474073 - | urea or short-chain amide ABC transporter, ATP-binding protein RHE_CH03313 3475306 - 3474788 - | hypothetical protein TERM 3214 3475153 - 3475097 - G 93 -17.4 -3.41878 | gap 2, opp_overlap 3475136, overlap 3475103 3475104 CTTGGCAAGGCAGAA GAAGAAG-GCCACCG-CCGCAATCGCCG GAT CGGCGATCGAGGCCAGTGGCGCTGCCTC GGCCTGCTTGCGCAA TERM 3215 3475146 - 3475103 - G 100 -16 -4.04491 | gap 1, opp_overlap 3475136, overlap 3475097 3475104 AAGGCAGAAGAAGAA GGCCACCG-CCGCAATCGCCG GAT CGGCGATCGAGGCCAGTGGCG CTGCCTCGGCCTGCT TERM 3216 3475145 - 3475104 - G 93 -19.5 -3.0161 | gap 1, opp_overlap 3475136, overlap 3475103 3475097 AGGCAGAAGAAGAAG GCCACCG-CCGCAATCGCCG GAT CGGCGATCGAGGCCAGTGGC GCTGCCTCGGCCTGC RHE_CH03314 3476137 - 3475382 - | urea or short-chain amide ABC transporter, ATP-binding protein TERM 3217 3475704 - 3475722 + g 75 -11.7 -3.5774 | GCCAGTTCGTCGCGG CGGTGCG TCAGC CGCACCG TTTCGAGGATTCCCT RHE_CH03315 3477306 - 3476143 - | urea or short-chain amide ABC transporter, permease protein TERM 3218 3476694 - 3476679 - G 76 -6 -4.56597 | CGGTCGCGGCAAAAA GGCTCG CGCG CGTGCC GTCAGCCTGGATGTT RHE_CH03316 3478919 - 3477303 - | urea or short-chain amide ABC transporter, permease protein TERM 3219 3478317 - 3478341 + g 100 -17.9 -3.8512 | overlap 3478309 3478304 ATTGCGGCCGCCGCG GGCGGCGATCG TAT CGATTGCCGCC TTCTTGTCCTCGATG TERM 3220 3478969 - 3479002 + r 90 -18.3 -3.19175 | gap 1, overlap 3478972 CGCAGCGGTAGGACG GAGCTTCCGCCCGGAT GAA GTCCGGGCGGAAG-TC TTCAGTCTGTTGACG TERM 3221 3478972 - 3479000 + r 100 -21.1 -3.15583 | overlap 3478969 AGCGGTAGGACGGAG CTTCCGCCCGGAT GAA GTCCGGGCGGAAG TCTTCAGTCTGTTGA RHE_CH03317 3480321 - 3479029 - | urea or short-chain amide ABC transporter, substrate-binding protein TERM 3222 3480492 - 3480460 - R 72 -9.9 -3.54424 | gap 1, opp_overlap 3480460 3480461 3480490, overlap 3480461 3480463 GCGCAGGCCGGGAAA GCACGGGCATCCCC ACCAGA GGGGATGCCC-TGT CGGTTCGATATTAGT TERM 3223 3480491 - 3480461 - R 75 -13.4 -2.72511 | gap 1, opp_overlap 3480461 3480460 3480490, overlap 3480460 3480463 CGCAGGCCGGGAAAG CACGGGCATCCCC ACCAGA GGGGATGCCC-TG TCGGTTCGATATTAG TERM 3224 3480461 - 3480491 + r 75 -13.4 -2.57067 | gap 1, opp_overlap 3480460 3480461 3480463, overlap 3480460 3480490 CGCAGGCCGGGAAAG CACGGGCATCCCC ACCAGA GGGGATGCCC-TG TCGGTTCGATATTAG TERM 3225 3480490 - 3480463 - R 75 -12.7 -2.90813 | opp_overlap 3480461 3480460, overlap 3480461 3480460 CAGGCCGGGAAAGCA CGGGCATCCCC ACCAGA GGGGATGCCCT GTCGGTTCGATATTA RHE_CH03318 3482587 - 3480503 - | putative phosphatase protein TERM 3226 3481401 - 3481420 + g 71 -13.6 -2.60486 | overlap 3481378 3481400 TGCGCCTGGGCGTAG GCAGCGCT CTTC AGCGCTGC ATTGTCGGACTTGTT TERM 3227 3485186 - 3485149 - H 77 -13.4 -2.91264 | gap 1 GGGGCGAGGCAGACA GCGTGCGGCCGATGCCG GGCCT CGGCCTCGGCCTCAC-C ATCACCCGGCTTCTG TERM 3228 3486354 - 3486393 + G 77 -15.6 -2.66435 | gap 1, overlap 3486351 TGCGCAATGCCCGCT CGGCCCGGAGCG-CCCGCG TCG CGCTGGACGCTGCCGGCCG TCATCTGCTGGCGGT RHE_CH03320 3485963 - 3486880 + | two-component response regulator protein TERM 3229 3487023 - 3487000 - T 100 -14.6 -4.85782 | opp_overlap 3487003 GTCCCGAAAAAGAAA GAAGCCCGGC CGGA ACCGGGCTTC GATCAGATCATGTTA braC2 3488178 - 3487057 - | amino acid ABC transporter, substrate-binding protein TERM 3230 3488311 - 3488330 + r 88 -7.8 -5.14563 | CTGTCAATGTTTGTC CTTCCACG AAAA CGCGGAAG TTTTTTCGTACAGCC RHE_CH03322 3488652 - 3488299 - | hypothetical protein braG 3489415 - 3488672 - | amino acid ABC transporter, ATP-binding protein TERM 3231 3489138 - 3489168 + g 76 -11 -3.76224 | overlap 3489140 AAGATGCGACGCCCT TCCGGCGACTGCGC GAT GCGCAGGCGCGCGA TTTCATGGGTCGGCA TERM 3232 3489140 - 3489167 + g 74 -13.4 -2.8552 | gap 1, overlap 3489138 GATGCGACGCCCTTC CG-GCGACTGCGC GAT GCGCAGGCGCGCG ATTTCATGGGTCGGC braF 3490290 - 3489415 - | amino acid ABC transporter, ATP-binding protein braE 3491681 - 3490290 - | amino acid ABC transporter, permease protein braD 3492588 - 3491686 - | amino acid ABC transporter, permease protein TERM 3233 3491987 - 3491949 - G 78 -14.5 -3.05385 | overlap 3491940 AATACATCAGATACA TCGTCCCGGCGACGGCG GCCAG CGCCGCCCCCATGACGA AAGTGATCGAGATCG TERM 3234 3492616 - 3492630 + H 74 -2.8 -4.99435 | overlap 3492618 CCTGGATGCGAGCCG AAGATG CTG CATCTC TTTTTGGTTATTCGG pssB 3493124 - 3493921 + | exopolysaccharide production protein pssA2 3494599 - 3495201 + | exopolysaccharide production protein TERM 3235 3495244 - 3495218 - T 70 -11.5 -2.91276 | gap 1, opp_overlap 3495217 3495216, overlap 3495217 CTTTCTGTGAGAAAG GC-CCGGCTGCC TCAG GGCGGCCGGTGC GGTTCTGGCGACCGC RHE_CH03329 3495750 - 3495301 - | hypothetical protein TERM 3236 3495581 - 3495595 + g 71 -5.6 -4.30576 | overlap 3495582 AACACCTGGACGAGC GTGCCG CGG CGGCAA TTTTCCTGATCGGAA RHE_CH03330 3495806 - 3496132 + | hypothetical protein RHE_CH03331 3496655 - 3496152 - | hypothetical protein TERM 3237 3496377 - 3496352 - Gf 78 -11.8 -3.45788 | opp_overlap 3496351, overlap 3496350 CGCGACAATAGAACA GGCTCCCGGC CCCGCT GCCGGCAGCC GTCGCTTCCGCCGCA RHE_CH03332 3496654 - 3497034 + | putative acetyltransferase protein TERM 3238 3497141 - 3497105 - TR 100 -18.2 -4.49756 | opp_overlap 3497105 CGGGAAACACCAAAA GCCATGTATGACGGAC GACAT GCCCATCATACATGGC TTCTCTGTGGCGATT TERM 3239 3497105 - 3497141 + Tr 86 -14.5 -3.5947 | opp_overlap 3497105 CGGGAAACACCAAAA GCCATGTATGACGGACG ACA TGCCCATCATACATGGC TTCTCTGTGGCGATT TERM 3240 3497158 - 3497183 + Tr 80 -11.7 -3.84451 | overlap 3497159 3497166 TCTCTGTGGCGATTC CCCGGGCGCCG ACGC CGGCGCCCGCA TTTCCGTTTAGGCCC TERM 3241 3497159 - 3497182 + Tr 82 -15.2 -2.90349 | overlap 3497158 3497166 CTCTGTGGCGATTCC CCGGGCGCCG ACGC CGGCGCCCGC ATTTCCGTTTAGGCC RHE_CH03333 3497544 - 3497191 - | hypothetical protein TERM 3242 3497416 - 3497433 + g 74 -9.9 -3.80461 | CTTTTCCTCGACGAC GATCTGG CTCT CCAGATC TTTCGTCATCCGTTC TERM 3243 3497492 - 3497528 + g 81 -11.7 -3.87869 | opp_overlap 3497509, overlap 3497493 TGCAATTGACGTCGT TTTTCGTTCACCTGAAA CTC TTTCAGGCGAACGAGAC TTTCTCGCGACTTCA TERM 3244 3497493 - 3497527 + g 79 -15.2 -2.924 | opp_overlap 3497509, overlap 3497492 GCAATTGACGTCGTT TTTCGTTCACCTGAAA CTC TTTCAGGCGAACGAGA CTTTCTCGCGACTTC TERM 3245 3497852 - 3497842 - H 72 -2.6 -4.85433 | AGAGAAATGGAAAAA TTAT TTA ATAA ATTCGATACTCCTTG ctrA 3497982 - 3498683 + | two-component response regulator protein controls chromosomal replication initiation TERM 3246 3498713 - 3498731 + T 100 -11.7 -4.99134 | opp_overlap 3498713 TATCGGATGACGAAA TCCCGCC CTCTC GGCGGGA TTTTTCGTTTGCACT TERM 3247 3498731 - 3498713 - T 80 -11.7 -3.79251 | opp_overlap 3498713 TATCGGATGACGAAA TCCCGCC CTCTC GGCGGGA TTTTTCGTTTGCACT RHE_CH03335 3499223 - 3498861 - | two-component response regulator protein RHE_CH03336 3499989 - 3499342 - | hypothetical protein RHE_CH03337 3500184 - 3500771 + | hypothetical protein RHE_CH03338 3501050 - 3502048 + | hypothetical protein RHE_CH03339 3502873 - 3502052 - | RNA methylase protein RHE_CH03340 3503263 - 3502880 - | hypothetical protein rluD 3503266 - 3504330 + | pseudouridylate synthase, ribosomal large subunit D protein rpoH1 3504521 - 3505429 + | RNA polymerase factor sigma-32 TERM 3248 3505454 - 3505481 + T 100 -19.2 -5.54907 | opp_overlap 3505454 ACGTACAGTTGGAAA CGCCACCTTCCG GATG CGGGAGGTGGCG TTTTTGTTTTGTCAA TERM 3249 3505481 - 3505454 - T 100 -17 -3.5944 | opp_overlap 3505454 ACGTACAGTTGGAAA CGCCACCTTCCG GATG CGGGAGGTGGCG TTTTTGTTTTGTCAA TERM 3250 3505593 - 3505567 - T 88 -15.2 -3.45118 | overlap 3505568 GGACGTTACAACGAA TCTCTTCTCCCC AGC GGGGAGAAGAGG GAGCAAGCGGTTAAG TERM 3251 3505592 - 3505568 - T 91 -18.7 -2.6675 | overlap 3505567 GACGTTACAACGAAT CTCTTCTCCCC AGC GGGGAGAAGAG GGAGCAAGCGGTTAA TERM 3252 3505649 - 3505639 - T 77 -3.2 -5.06816 | ATGTCTCAAGAAAAA CGAA GCA TCCG CCATCACTGGCTCGT RHE_CH03343 3508139 - 3505653 - | hypothetical protein TERM 3253 3506182 - 3506200 + g 78 -3 -5.00616 | overlap 3506183 GAGCTCTGCCCGATA CGCTCCTC GTA GAGGAACA TTTTTTCCGACGAGC TERM 3254 3506535 - 3506575 + g 87 -18.9 -2.7185 | overlap 3506484 3506568 3506572 AGCTGGCTGAGCTGG CGTCGGCGTGGTCTGGGCC GGC GTCTCGGACCCCGCCGGCG TCATTGCCGCCTCGT TERM 3255 3506728 - 3506747 + g 75 -13.6 -3.05715 | overlap 3506722 ATTATCGTGCCGATG CCGAAGCG GCGT CGCTTCGG TTCCATGCGGAAATT TERM 3256 3507323 - 3507339 + g 75 -13.7 -3.08464 | opp_overlap 3507316 GATCGAAATCGGCGA CCGGCTC CAC GAGCCGG TTGGATGCATGCTCC purA 3509498 - 3508200 - | adenylosuccinate synthetase TERM 3257 3510418 - 3510398 - gR 71 -8.2 -3.83205 | opp_overlap 3510407 3510409 3510411 ATCCTTTATATCAAA GGCGTCGA GGCTA TCGGCGCC AACCGCGCCGGTCTC TERM 3258 3510579 - 3510556 - gR 79 -9.4 -4.11484 | CGCAATCGCCGAAAA GGGCCGGCCG AAAG CGTCCGCCCC CACCGTGCCTGCCTC RHE_CH03346 3511459 - 3510611 - | putative acetyltransferase protein RHE_CH03345 3509446 - 3510765 + | hypothetical protein TERM 3259 3511115 - 3511097 - GT 85 -16 -3.0976 | opp_overlap 3511097 GCGAATAGTGGAATA GGCGGGCT CAA AGCCCGCC TTTCGGTAATTCCCC TERM 3260 3511097 - 3511115 + gT 100 -16 -3.71527 | opp_overlap 3511097 GCGAATAGTGGAATA GGCGGGCT CAA AGCCCGCC TTTCGGTAATTCCCC RHE_CH03347 3513571 - 3511787 - | dihydroxy-acid dehydratase TERM 3261 3512589 - 3512569 - G 71 -13.9 -2.62616 | GCAGTTCCCACATGA TCGCCGGCG TGC CGCCGGCGC GGTGATAGCGCTCGC TERM 3262 3513492 - 3513477 - G 76 -6.8 -4.4715 | CCGTAATTCATAAAA CGCTCC AGAT AGAGCG CAGTCATGTCGATAT TERM 3263 3513836 - 3513799 - R 73 -8.3 -4.07568 | opp_overlap 3513804 3513805, overlap 3513803 GTCGGGTGCCCAAAA GCGATACGGGCGAGAAC CGCA GTTCCCGCCCGATTTAC TCGACAAAGGAAGGT TERM 3264 3513831 - 3513803 - R 71 -11.8 -2.74605 | gap 1, opp_overlap 3513804 3513805, overlap 3513799 GGTGCCCAAAAGCGA TACGGGCGAGAAC CGCA GTTCCCGCCCG-A TTTACTCGACAAAGG TERM 3265 3513804 - 3513831 + r 80 -11.2 -3.72576 | opp_overlap 3513803 3513799, overlap 3513805 GTGCCCAAAAGCGAT ACGGGCGAGAAC CGCA GTTCCCGCCCGA TTTACTCGACAAAGG TERM 3266 3513805 - 3513830 + r 79 -14.7 -2.83403 | opp_overlap 3513803 3513799, overlap 3513804 TGCCCAAAAGCGATA CGGGCGAGAAC CGCA GTTCCCGCCCG ATTTACTCGACAAAG mexF1 3517062 - 3513862 - | multidrug-efflux system, acriflavin resistance protein mexE1 3518370 - 3517180 - | HlyD family multidrug-efflux system secretion protein RHE_CH03350 3519211 - 3518417 - | putative esterase protein RHE_CH03351 3519253 - 3520308 + | LysR family transcriptional regulator RHE_CH03352 3521297 - 3520554 - | short chain dehydrogenase TERM 3267 3520741 - 3520724 - G 73 -6.9 -4.25104 | TGCCGTTGAGGAAAA GGTCGGT GGCC ACCGGCC CGGGCGCAATGGCGT TERM 3268 3521541 - 3521490 - g 81 -15.9 -3.08813 | gap 1, overlap 3521530 TCGCAGCGGAAGACA CGGGCCTCCCGC-GCTCGACCG TTACCGACG CGGTCAAGCAGCTCGAGGCCCG CCTCGGCGTGCGCCT RHE_CH03353 3521414 - 3522322 + | LysR family transcriptional regulator RHE_CH03354 3522346 - 3522660 + | hypothetical protein TERM 3269 3523287 - 3523262 - g 95 -15.5 -3.99324 | opp_overlap 3523246, overlap 3523243 3523242 CGGCATCACTAGAAA TGCCGAAGCAC CGTG GCGCTTCGGCA TTCAGGGATCGCGAT RHE_CH03355 3522708 - 3523325 + | 3-methyladenine DNA glycosylase RHE_CH03356 3524867 - 3523326 - | multidrug resistance protein TERM 3270 3523748 - 3523737 - G 72 -7.2 -4.23674 | overlap 3523738 CGGCACGAAGAGAAA GCCG AGGC CGGC GCCCTGGATGAAGCC RHE_CH03357 3526077 - 3524860 - | HlyD family protein secretion protein RHE_CH03358 3526534 - 3526070 - | MarR family transcriptional regulator TERM 3271 3526667 - 3526644 - H 81 -10.2 -4.08692 | CAACCGCGGCCAAAA TGCCGCAGGC CGCG GCCGGCAGCA TGCCGTCCCTCACAG RHE_CH03359 3526765 - 3528306 + | Na+/H+ antiporter protein TERM 3272 3529096 - 3529079 - g 74 -9.1 -3.85539 | gap 1, opp_overlap 3529091, overlap 3529068 TATACCGAGATCAAA GC-GCCGC TCA GCGGCCGC ATCGATCGCCGCCTG TERM 3273 3529170 - 3529182 + G 91 -6.3 -5.31519 | CCACCATTGTTTCCC TCGAT CCG ATCGA TTTTTATTTCGATGT TERM 3274 3529702 - 3529685 - g 73 -12.7 -3.11634 | overlap 3529680 CCGCAGATGAGCGAA CTGCCGC AGGA GCGGCAG GATACGGCGCCGGAG mexE2 3528566 - 3529744 + | HlyD family multidrug-efflux system secretion protein TERM 3275 3531571 - 3531547 - g 71 -9.2 -3.72893 | gap 1, opp_overlap 3531550 3531551 GATGCCGTCATCAAA CGG-GTGGGCG ACAT CGCCCGCACCG TACCCGGCGTCGGCA mexF2 3529741 - 3532926 + | multidrug-efflux system, acriflavin resistance protein RHE_CH03362 3533800 - 3533063 - | serine/threonine specific protein phosphatase protein TERM 3276 3533272 - 3533234 - G 81 -11.6 -3.85698 | opp_overlap 3533243 3533245, overlap 3533219 3533218 CCTGCTTTCGAGAAA GCGGTGACGGATGAGGAC CAG GTCCTCGTCTGTCTGCGC GGAGAGCGGCAGCAT TERM 3277 3534005 - 3533967 - H 86 -10.2 -4.26076 | TCATTTGGAGGAAAA TCCCTCACTCCTGTCACG CGT CGAGGAAGGAGTGAGCGA TGGGAACGATATCGC TERM 3278 3534656 - 3534695 + G 86 -15.7 -3.65351 | gap 1, opp_overlap 3534627 GTCCATGTCGATGCC CGCTCGATCGCGCCGGCC ACGTC GGCCGGTTCGA-CGGGCG TTTCGCTCGGCCTGC RHE_CH03363 3534005 - 3535153 + | putative FMNH2-dependent monooxygenase protein RHE_CH03364 3535630 - 3535166 - | hypothetical protein RHE_CH03365 3536595 - 3535807 - | short-chain alcohol dehydrogenase protein RHE_CH03366 3536736 - 3537506 + | putative hydroxypyruvate isomerase protein RHE_CH03367 3537943 - 3537503 - | hypothetical protein RHE_CH03368 3538131 - 3538604 + | hypothetical protein ugpCch2 3539730 - 3538621 - | glycerol-3-phosphate transporter ATP-binding subunit TERM 3279 3538879 - 3538832 - G 71 -9 -3.72695 | gap 1, overlap 3538833 3538850 AGTTCTTCGATGAAA TCGGCCGTTGCCACCAGA-GCGC CGG GCGCATCCGGCACCACCAGCCGG GCGGCCTCGGCGCGC TERM 3280 3538878 - 3538833 - G 70 -12.5 -2.83403 | gap 1, overlap 3538832 3538850 GTTCTTCGATGAAAT CGGCCGTTGCCACCAGA-GCGC CGG GCGCATCCGGCACCACCAGCCG GGCGGCCTCGGCGCG TERM 3281 3538920 - 3538952 + g 81 -15.6 -3.05521 | gap 1, overlap 3538928 CGACGCGTTTGCCTT TCAGCGCTGCGGCGC GTTC GCGCGGCAGCGC-GA TCTTGCGGCTCTGAT ugpEch2 3540657 - 3539743 - | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 3282 3540054 - 3540031 - G 75 -4.4 -4.76041 | opp_overlap 3540032 3540033, overlap 3540032 3540033 TATATCGACGAAAAA TCGTACGGCG CCGG CGCCGTCCAT CTTTGTCGCCTCGGC ugpAch2 3541552 - 3540668 - | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 3283 3541458 - 3541447 - G 72 -7.2 -4.183 | TGAACGCCCAATAAA GCGC CTGC GCGC TCGGCCAATAGAAGA TERM 3284 3541663 - 3541628 - R 100 -18.3 -3.91412 | gap 1, overlap 3541630 AGGAGAGCTTACAAA GACGCACCCGGCGCGC GCAAG GCG-GCCGGGTGCGGC TCATGCCAGGCGATC TERM 3285 3541661 - 3541630 - R 100 -19.5 -3.54447 | gap 1, overlap 3541628 GAGAGCTTACAAAGA CGCACCCGGCGCGC GCAAG GCG-GCCGGGTGCG GCTCATGCCAGGCGA ugpBch2 3543032 - 3541677 - | sn-glycerol 3-phosphate ABC transporter, substrate-binding protein TERM 3286 3542258 - 3542268 + g 73 -8.2 -3.99374 | overlap 3542229 CTTCGACGAAGGTCT GGCC GAC GGCC TTGTTCTTGATGACG TERM 3287 3543076 - 3543054 - R 75 -9.8 -3.7398 | overlap 3543052 CTCGAACGTAAAAGA GACGCGCACT TTC AGCGCACGCC CTATTAGCTGGTCCA RHE_CH03373 3544602 - 3543397 - | ROK family transcriptional regulator TERM 3288 3543507 - 3543530 + g 79 -13.8 -3.53012 | CCATGCCGGACTGCA GGCGTGGCAG CGTC CGGCCACGCC TTTCAGCGACCGAGG TERM 3289 3544486 - 3544503 + g 71 -14.1 -2.52516 | overlap 3544485 3544484 CGCCCGCGCCAGATC GGCGCGC GAGA GCGCGCC ATTGATCCTCAAGGC TERM 3290 3544720 - 3544693 - H 71 -11.3 -3.06679 | overlap 3544680 AAGAGTTCCAGGGAA CGCTGGAAGCC GAATAG GGCCTCCAACG ACGCTCCGAGATGAT TERM 3291 3544799 - 3544775 - H 100 -17.9 -4.07568 | opp_overlap 3544769, overlap 3544791 GTGCCTTCTCGAAAA CCGATGGCGGC AGA ACCGCCATCGG CCATGCGTAAATTTT RHE_CH03374 3544832 - 3546070 + | sugar ABC transporter, substrate-binding protein TERM 3292 3546084 - 3546111 + F 70 -11.9 -2.53876 | opp_overlap 3546084 3546083, overlap 3546087 GAGTCCGGCATAAAC CCCGGGCGGCG CCCTGT CGTCGCCCGGC TCCATTCCAATAACC RHE_CH03375 3546151 - 3547035 + | sugar ABC transporter, permease protein RHE_CH03376 3547035 - 3547880 + | sugar ABC transporter, permease protein TERM 3293 3548748 - 3548732 - g 81 -15.1 -3.05596 | GACGCCTCGAGTGAA GCGCCGG TCG CCGGCGC CGTGACAATCCGCTT RHE_CH03377 3547877 - 3548899 + | sugar-processing enzyme RHE_CH03378 3548900 - 3549829 + | sugar kinase protein RHE_CH03379 3549826 - 3550905 + | sugar ABC transporter, ATP-binding protein exsH 3551655 - 3550927 - | endo-1,3-1,4-beta-glycanase protein RHE_CH03381 3553287 - 3551806 - | exopolysaccharide polymerization/export protein RHE_CH03382 3554707 - 3553367 - | glycosyltransferase RHE_CH03383 3555954 - 3554608 - | glycosyltransferase RHE_CH03384 3556691 - 3555954 - | putative transcriptional regulator protein exoY 3557139 - 3557840 + | exopolysaccharide production protein TERM 3294 3559516 - 3559504 - g 83 -7.7 -4.62069 | opp_overlap 3559503 CGCCGAGCTGAAAAA GGAGT TCG ACTCC ATATTCGTCGACATT RHE_CH03386 3558050 - 3559717 + | exopolysaccharide transporter TERM 3295 3560178 - 3560125 - g 83 -9.6 -4.25104 | gap 3, opp_overlap 3560136, overlap 3560126 GTTTTTGCAGCAAAA CCCGACGTCGTGATCGCCACCGGCGAG GTC CTGGCCGATGGCG-TC-CT-CGTTGGG GGACTCGAAATGTCG RHE_CH03387 3559714 - 3560736 + | glycosyltransferase exoF2 3560741 - 3562120 + | exopolysaccharide biosynthesis protein TERM 3296 3562286 - 3562310 + G 72 -7.7 -4.13767 | overlap 3562287 TTCTCCTGCTTGGCC TGCTCGCCATG GTC CACGGCGCGCG TTTTGCAGTCACGAC RHE_CH03389 3562243 - 3563709 + | hypothetical protein RHE_CH03390 3563709 - 3564452 + | hypothetical protein TERM 3297 3564819 - 3564835 + G 83 -7.9 -4.56597 | AACTCGAAAACGCCA CCGTACC TGA GGGACGG TTTTTCGCGGCGCGC TERM 3298 3564944 - 3564962 + G 72 -2.3 -4.72986 | overlap 3564946 CGCAACGGCTGGATC GGGCAGG AGGCG CTTGCGC TTTTTGCTAAAAATC RHE_CH03391 3564449 - 3565360 + | glycosyltransferase TERM 3299 3565476 - 3565465 - g 72 -7.2 -4.21194 | TCGCATTACGCAAAA GCGC GCCT GCGC CGGTCGTTAAAGGCT RHE_CH03392 3565420 - 3566538 + | hypothetical protein RHE_CH03393 3567891 - 3566782 - | acetyltransferase protein TERM 3300 3567402 - 3567385 - G 73 -3.3 -4.77036 | overlap 3567387 GCCGAGCAGGAAAAA CACGGCG ATCG CGACGTA ACATTCAAGTTCGAA RHE_CH03394 3568090 - 3570420 + | putative pyrroloquinoline-quinone-dependent quinate dehydrogenase protein RHE_CH03395 3570443 - 3570769 + | multicopper oxidase protein TERM 3301 3571000 - 3571047 + G 100 -13.6 -4.35524 | gap 1, opp_overlap 3571000 3571003, overlap 3571006 TTGTTGCCTCGGAAA CATCTGGAGCGGTTCAGCTTTTC ACG GAAGCGCAGAACCGCTCTA-ATG TTTTGGATTTACCCG TERM 3302 3571006 - 3571042 + G 79 -15.9 -2.96755 | opp_overlap 3571003 3571000, overlap 3571000 CCTCGGAAACATCTG GAGCGGTTCAGCTTTTC ACG GAAGCGCAGAACCGCTC TAATGTTTTGGATTT RHE_CH03396 3570933 - 3571307 + | hypothetical protein RHE_CH03397 3571321 - 3571644 + | hypothetical protein TERM 3303 3571841 - 3571825 - f 100 -10.8 -5.30155 | opp_overlap 3571825 GCAGGAATCAAAAAA GCCCGC GAGCT GCGGGC TTTTTGCATTTGGTT TERM 3304 3571825 - 3571841 + F 100 -11.5 -4.83759 | opp_overlap 3571825 GCAGGAATCAAAAAA GCCCGCG AGC TGCGGGC TTTTTGCATTTGGTT TERM 3305 3571966 - 3571949 - f 79 -10.5 -4.01888 | opp_overlap 3571949 ATTTTACAGCAGAAA GGGCCGC TGTC GCGACCC TTTTGTGTTGGCCTG TERM 3306 3571949 - 3571966 + F 82 -8.3 -4.67608 | opp_overlap 3571949 ATTTTACAGCAGAAA GGGCCGC TGTC GCGACCC TTTTGTGTTGGCCTG TERM 3307 3573415 - 3573428 + F 74 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTGATAAACAGT TERM 3308 3573803 - 3573819 + F 73 -8 -4.08546 | overlap 3573798 3573797 TTGGTCTTTCGGCGA GAGGGT CTCTC ACCCTC TTTATCGTTACTCAT TERM 3309 3574994 - 3575037 + F 70 -10.5 -3.36273 | CTGGCGAATAGTTGG TAGCGAGTAGCGAACAG TTTTTAAATT CTATTCGCTATTCGCTA TTCCTATTCGCGGCG TERM 3310 3575788 - 3575769 - f 77 -7.8 -4.45168 | overlap 3575763 TCTTCAAAAGACAAA TTCGTCGC TCAC GCGCCGAA GGCGCTCCGCGGGGG TERM 3311 3577266 - 3577286 + F 72 -9.7 -3.55761 | opp_overlap 3577265 3577262 CAGTATCAAAGGCAG TTCCAGGGT TGA GCCCTGGGA TTTCACCCCTGACTG TERM 3312 3578242 - 3578263 + F 71 -4.5 -4.65916 | gap 1, overlap 3578248 TTTTTGACATTTTTG TAACAGGCTG ATT CGGC-TGTTA TTTTCTTCGCATGCC TERM 3313 3578733 - 3578705 - g 78 -3 -5.00616 | gap 1, overlap 3578707 3578719 3578720 GCCCCGCGCAAAAAA CGCCGTCG-CCCA AATC CGGGCCGAAGGGG CAGCCGCCGCCGGCG RHE_CH03404 3578532 - 3578870 + | hypothetical protein TERM 3314 3578900 - 3578940 + F 74 -12.8 -2.79694 | gap 1, opp_overlap 3578898, overlap 3578897 CTAAAAAATCATATT TTTACGCACCC-GCCGA TCCGTTTT TCGGTAGGGTGCGTAAA TGCTTAGGTCTTATA RHE_CH03405 3579009 - 3579215 + | hypothetical protein TERM 3315 3579241 - 3579274 + G 73 -8.7 -4.09243 | overlap 3579240 CCGACCGGTTTTGCG CGCAGACGGCGCTTT ATCC GAAGCGCCGACGTCG TTTTGCACCCCTATC RHE_CH03406 3579236 - 3580174 + | pseudouridylate synthase, ribosomal large subunit protein RHE_CH03407 3580189 - 3580884 + | phosphoribosyltransferase TERM 3316 3581525 - 3581535 + G 78 -4.6 -4.67942 | GCGCTTGCCAGGACG TCCG GTG CGGG TTTTCATTTCTTCGA RHE_CH03408 3581024 - 3582766 + | cation transporter protein TERM 3317 3583533 - 3583555 + G 72 -7.7 -4.11216 | opp_overlap 3583543 3583544, overlap 3583544 AGCAGCCGCTACTGG CTTGCCGAA ACCTA TCCGGCAAG TTTTGCCGCTGGCAA TERM 3318 3583755 - 3583741 - g 73 -12.8 -3.21276 | overlap 3583739 TTGTTGCCGACAACA GCGGCG AGA CGCCGC TTGCCCGTGTCCGCA purC2 3582852 - 3583796 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 3319 3584326 - 3584305 - g 75 -3.7 -4.7497 | gap 1 CGCATCGAGGAAAAA CTCCGCGAGA TCA TC-CGCAAAG GCATGACGGAGGGAC RHE_CH03410 3583906 - 3584508 + | TetR family transcriptional regulator TERM 3320 3584500 - 3584542 + F 71 -4.9 -4.65916 | gap 1, opp_overlap 3584500, overlap 3584509 GCACTGCAAAATAAC GC-TTGCTAAGTGACGAATG CTGA CTTACGTCACTTCGTAAAGC TTTTCTTAGACTCGG RHE_CH03411 3584663 - 3585874 + | HlyD family protein secretion protein TERM 3321 3585885 - 3585859 - f 87 -15.9 -3.31144 | overlap 3585875 3585876 CGGTGACGCTGAGAA GCCCGCAGCGA AATAA TCGCTGCGAGC CGCATCGTCACCGTC TERM 3322 3586270 - 3586248 - g 74 -9.8 -3.79906 | opp_overlap 3586263 CCAGGTGCAGAATAA GCTGCAGCTG GTC CAGTCGCAGC TTCCGGGCGACGTTA TERM 3323 3587446 - 3587434 - g 81 -6.9 -4.68545 | overlap 3587436 AGTGAACACAGAAAA CACCG CGT CGGCG ACTGGTTCAACCGCA TERM 3324 3588129 - 3588108 - g 73 -6.5 -4.30576 | gap 1, overlap 3588110 GCTCGATCAGGAAAA GATCGGCGCC ATG GGCGTCGA-C ATCGCCTCGGTCAAT TERM 3325 3588128 - 3588110 - g 74 -10.2 -3.7574 | overlap 3588108 TCGATCAGGAAAAGA TCGGCGCC ATG GGCGTCGA CATCGCCTCGGTCAA RHE_CH03412 3585922 - 3589032 + | multidrug ABC transporter nodTch 3589184 - 3590620 + | nodulation protein (outer membrane efflux protein) TERM 3326 3590669 - 3590649 - f 83 -14 -3.36273 | opp_overlap 3590649 TTTCCGGAATACGAA CCCCGCGA TCGCC TCGCGGGG TTTTTTCACGCCGGA TERM 3327 3590649 - 3590669 + F 100 -14 -5.00616 | opp_overlap 3590649 TTTCCGGAATACGAA CCCCGCGA TCGCC TCGCGGGG TTTTTTCACGCCGGA TERM 3328 3590892 - 3590877 - g 74 -11.8 -3.53012 | opp_overlap 3590875 GCGCTTTCCGGTAAA GGCCGG GTCT CCGGCC AGTTGGTCGAACGGA TERM 3329 3591723 - 3591703 - g 80 -5.4 -4.93898 | gap 1, opp_overlap 3591704, overlap 3591704 3591705 3591707 ATACCATCAGAAAAA GCCACGCCC GGGA AGGCGTG-C TCGTTACCGCGGAAA RHE_CH03414 3590784 - 3591827 + | LacI family transcription regulator potD 3591829 - 3592851 + | spermidine/putrescine ABC transporter, substrate-binding protein potB 3592914 - 3593741 + | spermidine/putrescine ABC transporter, permease component I protein potC 3593738 - 3594517 + | spermidine/putrescine ABC transporter, permease component II protein TERM 3330 3594696 - 3594649 - g 71 -11.3 -3.52073 | overlap 3594643 GCGGCAAGACGACAA CGATGCGCGCC-ATTGCCGGCCT GCTG AAGCCGGCTTCCGGC-CGCATCG GTCTCGACGGCGCCG potA 3594510 - 3595535 + | spermidine/putrescine ABC transporter, ATP-binding protein RHE_CH03419 3595540 - 3596460 + | inosine-uridine preferring nucleoside hydrolase protein TERM 3331 3596922 - 3596953 + G 75 -12.2 -3.64822 | gap 1 CCCTCCTGTGTACCT TCGGCGCCGGGCCTG GAA CTTG-CCGGCGCCGA TTTCGATGCCGCCGT TERM 3332 3597374 - 3597349 - g 76 -11.1 -3.76759 | gap 1, opp_overlap 3597349 ATGAACTCTACCAAA GC-GGCGGCCTC GAT GAGGTCGCCCGC CGCTTGGTGCGCTAC adeC2 3596457 - 3598244 + | adenine deaminase protein TERM 3333 3598287 - 3598267 - f 71 -4.6 -4.62069 | CGCCCAGCTCAAAAA GCGAAGCC ACGAG AGCCCCGC GAACCCTGTGCCAAG TERM 3334 3599313 - 3599343 + G 80 -4.7 -4.82901 | gap 2, overlap 3599314 TACGTCGATTGGCTG C-GCCTCGTCG-CGT CAG ACGGCGACCGGGCTG TTTTTCTGACCAACG TERM 3335 3599314 - 3599341 + G 73 -8.4 -4.03995 | gap 1, overlap 3599313 ACGTCGATTGGCTGC GCCTCGTCG-CGT CAG ACGGCGACCGGGC TGTTTTTCTGACCAA RHE_CH03421 3598605 - 3599774 + | hypothetical protein RHE_CH03422 3601384 - 3599753 - | hypothetical protein TERM 3336 3600536 - 3600557 + gT 72 -4.3 -4.56597 | overlap 3600539 GTGACCGAGGGCCGC CAACGCCAG AAGG CTGCCGCTG TTTTTGGCCGAAAGG RHE_CH03423 3603030 - 3601333 - | hypothetical protein TERM 3337 3601439 - 3601454 + gr 70 -10.4 -3.30161 | opp_overlap 3601437, overlap 3601438 3601434 AACGGGCCATACAGC GCCTGC AGCG GCAGGC TGTTGATTCCTGTTT RHE_CH03424 3603713 - 3602964 - | short chain dehydrogenase RHE_CH03425 3605032 - 3603710 - | putative oxidoreductase protein RHE_CH03426 3605471 - 3605040 - | hypothetical protein RHE_CH03427 3607232 - 3605481 - | putative integral membrane prenyltransferase protein RHE_CH03428 3607323 - 3609221 + | di- and tricarboxylate transporter protein RHE_CH03429 3610481 - 3609312 - | hippurate hydrolase protein TERM 3338 3610528 - 3610508 - R 90 -15.4 -3.59979 | opp_overlap 3610506 3610503 3610503 CCCCTTCATGCGAAA CGGGCGCC CGATC GGCGCCCG CGTCAGTTCATCCTT RHE_CH03430 3612189 - 3610681 - | hypothetical protein RHE_CH03431 3612657 - 3612196 - | hypothetical protein RHE_CH03432 3613846 - 3612863 - | hypothetical protein TERM 3339 3613605 - 3613643 + g 73 -8.7 -4.07885 | gap 2, overlap 3613606 GGATCGGCATTCGCC ACACGGCCGGCGCCGAGCG TGC CGC-CGGCGCC-GCCGACA TTTTCGACCACGATC TERM 3340 3613815 - 3613801 - G 95 -12.8 -4.27117 | CGGCGAGAAGAGAAA CCGCGG CAG CCGCGG TCAGGCCGAGCACGG RHE_CH03433 3615429 - 3614095 - | two-component response regulator protein RHE_CH03434 3617393 - 3615426 - | two-component sensor histidine kinase protein TERM 3341 3616830 - 3616818 - G 74 -6.2 -4.50976 | opp_overlap 3616827 GCCGAGAGCATAAAA CCGC GCTTG GCGG CCTTCGATCGCTTCC TERM 3342 3617912 - 3617934 + G 77 -13.4 -3.3353 | overlap 3617910 GGAGCACGGGGGCCC GATGCGGCTC GTC GTGCCGCATC TCTATTTCTGGAAAA RHE_CH03435 3617406 - 3618068 + | oxidoreductase protein RHE_CH03436 3618676 - 3618053 - | hypothetical protein RHE_CH03437 3619410 - 3618676 - | hypothetical protein TERM 3343 3619193 - 3619176 - G 85 -5.5 -5.09225 | gap 1, opp_overlap 3619178, overlap 3619156 3619178 AGGCGAGCGAAAAAA GC-CCGCC GAC GGCGATGC TGTAGGCCATGACGC TERM 3344 3619231 - 3619218 - G 76 -9.5 -4.08216 | opp_overlap 3619218 TGACGCCGGTGAAAA GGCCG AGAC CGGCC TGTGTGGCCCGGCTG RHE_CH03438 3619734 - 3619525 - | hypothetical protein RHE_CH03439 3619965 - 3620519 + | putative phosphoglycerate mutase protein TERM 3345 3620774 - 3620747 - f 93 -13.4 -4.02022 | opp_overlap 3620743 3620748, overlap 3620748 CTGAAGCACGAGAAA GGGCGAGCATGC GGCA GCACGCTCGCCT TCGTCTTCTTCCGTG TERM 3346 3620748 - 3620773 + F 85 -14.7 -3.4691 | opp_overlap 3620747 3620748, overlap 3620743 TGAAGCACGAGAAAG GGCGAGCATGC GGCA GCACGCTCGCC TTCGTCTTCTTCCGT TERM 3347 3620773 - 3620748 - f 87 -16.9 -3.00731 | opp_overlap 3620748 3620743, overlap 3620747 TGAAGCACGAGAAAG GGCGAGCATGC GGCA GCACGCTCGCC TTCGTCTTCTTCCGT TERM 3348 3621464 - 3621490 + G 83 -15.9 -3.12351 | overlap 3621461 3621487 TGTGTCTACCGCTTC GGCGGCGACGA ATTCA TCGTCGTCGCC TTCGCTCTGACGGCG TERM 3349 3621487 - 3621519 + G 70 -7.7 -4.08945 | gap 1, overlap 3621464 CGAATTCATCGTCGT CGC-CTTCGCTCTG ACGGCG CAGCGCGAGGAGCG TTTTGCCAGACTACT TERM 3350 3622342 - 3622314 - g 86 -5.2 -5.16237 | gap 1 AACGCCAGGAAAAAA TCGTCCG-CGCCA TGCT TGGCCTCGGCCGA AGCCTCAATATCAAG RHE_CH03440 3620945 - 3622516 + | putative sensory box/GGDEF family protein TERM 3351 3623457 - 3623439 - g 78 -6.7 -4.62984 | opp_overlap 3623451 3623453 GCAGGAGAGAGAAAA CGATCCC TGGGT GAGATCG AGGATCTGCTCTATC TERM 3352 3623615 - 3623634 + G 73 -8.5 -4.07568 | overlap 3623583 3623595 TATGGCGGCAACCCT CGGCGGC CTTGAT GCCGTCG TTTTCACCGCCGGCA ackA 3622671 - 3623849 + | acetate kinase TERM 3353 3624461 - 3624415 - g 77 -13.6 -3.28712 | CGCCGCCTTCGACAA TCCCGACCTCACCGTCGCCTGC ATC GTCGGTGACGGCGAGGCCGAAA CCGGGCCGCTCGCCG TERM 3354 3624622 - 3624634 + G 93 -9.1 -4.72272 | overlap 3624618 TCTCTTCGAAGGCTA CGGCT ACG AGCCG TTTTTCGTCGACGGC TERM 3355 3624766 - 3624720 - g 100 -18.1 -3.55563 | gap 2, overlap 3624731 3624745 ACCGCATCCGCGAAA TCCAGGAGCAAGCCCGCAGCAGC AAG GCTGCTGCGGGCT-GC-CCGCGA TGGCCAATGATCGTG TERM 3356 3624757 - 3624731 - g 100 -23.8 -3.23984 | overlap 3624720 3624745 GAAATCCAGGAGCAA GCCCGCAGCAGC AAG GCTGCTGCGGGC TGCCCGCGATGGCCA TERM 3357 3625364 - 3625376 + G 76 -10.5 -3.83459 | overlap 3625362 3625373 GGTTACCTGCTGACC GGCCG GCA CGGCC TCTTTTCATGTTATG TERM 3358 3625595 - 3625582 - g 81 -3.7 -5.06414 | overlap 3625583 CGTCGTCAACAAAAA GGCCG ACAT CGTCC GCATCTACCTGCCGC RHE_CH03442 3623921 - 3626308 + | putative phosphoketolase pobR 3627247 - 3626357 - | AraC family transcriptional regulator TERM 3359 3626784 - 3626804 + g 76 -8.9 -4.12188 | opp_overlap 3626771, overlap 3626785 TAGGCAGCCAATACT TCGTTGCGG CCA CCGCGGCGG TTTTCGAACTCGTCG pobA 3627348 - 3628535 + | 4-hydroxybenzoate 3-monooxygenase TERM 3360 3628940 - 3628888 - g 76 -13.5 -3.18681 | TGTCAACGGCAGCAA GGTCGG-CAGCGACACGGTCGAGAT CGTCT ACCGCGAC-GTGCCGCAGGCCGACC CGGCCCAATCCAAGG TERM 3361 3629276 - 3629266 - g 73 -8.2 -4.07885 | opp_overlap 3629268, overlap 3629253 GACCGGCTTCGAAAA GGCC GGC GGCC AGGTGGTTGAGGCGA RHE_CH03445 3628721 - 3629893 + | putative branched-chain amino acid ABC transporter, substrate-binding protein RHE_CH03446 3630089 - 3630823 + | branched chain amino acid ABC transporter permease RHE_CH03447 3630825 - 3631829 + | branched chain amino acid ABC transporter permease RHE_CH03448 3631826 - 3632590 + | branched chain amino acid ABC transporter ATP-binding protein RHE_CH03449 3632571 - 3633287 + | branched chain amino acid ABC transporter ATP-binding protein TERM 3362 3633419 - 3633402 - f 86 -5.5 -5.25803 | overlap 3633416 AACGGGCAGAAAAAA CCGCATT CCCC AAAGCGG CATCAGCGTAAGACA rapB3 3633618 - 3634445 + | autoaggregation protein (adhering protein) trmU 3636311 - 3635085 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 3363 3636478 - 3636459 - H 91 -12.8 -4.13995 | CGGTGAGAAAGGAAA GGCGCGGC CGAG GCCACGCC TTGAAAGCGGGGGTG RHE_CH03453 3636781 - 3637047 + | hypothetical protein TERM 3364 3637068 - 3637103 + T 100 -23.4 -2.72166 | opp_overlap 3637074, overlap 3637074 ACCCATTGCTGACGC AGAAAACCCGGCGCCG TTTC CGGCGCCGGGTTTTCC CTGTTTCCTTGGGAG TERM 3365 3637074 - 3637097 + T 100 -21 -4.32903 | opp_overlap 3637074, overlap 3637068 TGCTGACGCAGAAAA CCCGGCGCCG TTTC CGGCGCCGGG TTTTCCCTGTTTCCT TERM 3366 3637097 - 3637074 - T 100 -21 -4.42386 | opp_overlap 3637074 3637068 TGCTGACGCAGAAAA CCCGGCGCCG TTTC CGGCGCCGGG TTTTCCCTGTTTCCT serA 3638723 - 3637128 - | D-3-phosphoglycerate dehydrogenase TERM 3367 3637483 - 3637501 + g 71 -5.2 -4.4017 | opp_overlap 3637485, overlap 3637485 ACCGTAAGCTTGATA TAGCCGTC GAA GACGCCTG TTTTGTCGCGCTTGA serC 3639984 - 3638806 - | phosphoserine aminotransferase TERM 3368 3640148 - 3640128 - R 88 -7.5 -5.0925 | opp_overlap 3640128, overlap 3640110 GGCGAAAATGAAAAA GCCACCC GGAGCAA GGGCGGC TTTCTGATGCGATGG RHE_CH03456 3641014 - 3640175 - | heat resistant agglutinin 1 protein TERM 3369 3641227 - 3641248 + r 76 -7.1 -4.65969 | opp_overlap 3641228, overlap 3641228 GTGCGCAATAAAAAA AGCCGGCGC TCAT GCACCGGCC TTTTGATTGTTTGTT TERM 3370 3641228 - 3641247 + r 70 -10.6 -3.37141 | opp_overlap 3641228, overlap 3641227 TGCGCAATAAAAAAA GCCGGCGC TCAT GCACCGGC CTTTTGATTGTTTGT TERM 3371 3641247 - 3641228 - R 100 -12.8 -5.7946 | opp_overlap 3641228 3641227 TGCGCAATAAAAAAA GCCGGCGC TCAT GCACCGGC CTTTTGATTGTTTGT RHE_CH03457 3642625 - 3641273 - | phosphosugar isomerase protein TERM 3372 3642812 - 3642845 + r 86 -11 -4.11394 | opp_overlap 3642814, overlap 3642814 CCGTTACCAATGAAA AAGGCCGGATCTCC CATAGC GGAAATCCGGCCTG TTTTCGAGATCGCGT TERM 3373 3642814 - 3642843 + r 84 -13.6 -3.65542 | opp_overlap 3642814, overlap 3642812 GTTACCAATGAAAAA GGCCGGATCTCC CATAGC GGAAATCCGGCC TGTTTTCGAGATCGC TERM 3374 3642843 - 3642814 - R 100 -15.8 -4.90266 | opp_overlap 3642814 3642812 GTTACCAATGAAAAA GGCCGGATCTCC CATAGC GGAAATCCGGCC TGTTTTCGAGATCGC ftsH 3644798 - 3642867 - | cell division metalloproteinase protein TERM 3375 3642943 - 3642990 + g 77 -14 -3.28924 | gap 1, overlap 3642969 CCGGCCTTCGGAACG GCCGATCCACGG-CTCGGCGGCG AAT CGTCGCCGAGATCGCGGGAGGGC TTCTCACCGCGGATC TERM 3376 3643732 - 3643717 - G 78 -6.8 -4.62069 | gap 1, overlap 3643718 TCGGCACCGGAAAAA CCCGGCG TGC CGC-GGG CGAGAACCTTGAGAT TERM 3377 3644439 - 3644427 - G 72 -2.6 -4.72272 | CTGCCGCATGAAAAA CAGC CAGAC GCCG AGAATGAGAAGCATC TERM 3378 3644767 - 3644738 - G 81 -10 -4.15543 | overlap 3644729 GAAACATGCTGAAAA GGGCGATCAGCA GAAGCG CGATGATCGCCC ACAATGCGAAATTAC RHE_CH03459 3646356 - 3644896 - | putative cell cycle protein MesJ/cytosine deaminase-related protein RHE_CH03460 3647117 - 3646368 - | hypothetical protein TERM 3379 3646775 - 3646818 + g 76 -7.4 -4.25848 | overlap 3646769 3646770 CCGTCTGCTGCGGCG TGCCGCTGTTGGCTCTGG GAATCGGG CCGGAACCGATGGTGGCA TTTTCGTCGACGCTT TERM 3380 3646994 - 3647013 + g 72 -4.2 -4.56597 | opp_overlap 3646975, overlap 3646984 3646986 TCCCCGACGCGGCAG GAGCGGCA TCTG TCTCGCTC TTTTTGACCGGAGCC TERM 3381 3647021 - 3647053 + g 100 -9 -5.03715 | gap 1 TCTCGCTCTTTTTGA CCGGAGCC-TTGGCG CCAC CGCCGCCGGCGCCGG TTTTTTCGAGCTGCT TERM 3382 3647490 - 3647469 - R 100 -15.1 -4.85782 | GTGGTCAAAAAGAAA GGCGGCCCC TGAT GGGACCGCC TCGGTAAAACCAATT omp2 3648053 - 3647517 - | outer membrane lipoprotein tolB 3649515 - 3648205 - | translocation protein TolB RHE_CH03463 3649975 - 3649538 - | putative signal peptide protein TERM 3383 3649833 - 3649852 + g 80 -5.6 -4.76041 | overlap 3649837 ATCGCATTGATAGCT GCCTCGGT TAAA ACCGGTGC TTTTTGATCGCTGTC tolA 3651118 - 3649976 - | signal peptide protein tolR 3651582 - 3651127 - | protein transporter protein TERM 3384 3651288 - 3651314 + g 88 -14.4 -3.73775 | TCGCCTCGAGCTTGG CGGCGATCTCGG CGG CCGGGATCGGCG TTTCCTGCAGATAGA TERM 3385 3651608 - 3651628 + r 77 -8.2 -4.29738 | TCCGTTGGTTACTGA GCGGCAGC GCGCG GCTGCAGC TTTTCGTCGATCTGG tolQ 3652320 - 3651601 - | protein transporter protein TERM 3386 3652153 - 3652131 - G 74 -5.5 -4.46212 | GGCCCGACCAGAAAA CCTGCTCGA ATTTG TCGAACTGG CGCCGTGCGCGGCCA TERM 3387 3652365 - 3652345 - R 83 -11.8 -3.75332 | overlap 3652332 ATCCCCGAATCCAAA CGCCCGGC GCTGG ACCGGGCG GCACAAAATGATCTC RHE_CH03467 3653141 - 3652686 - | 4-hydroxybenzoyl-CoA thioesterase protein TERM 3388 3653227 - 3653195 - H 83 -15 -3.05384 | opp_overlap 3653195 3653196 3653203 3653203, overlap 3653203 CTTCGCGGCAGGCAA GCATTGAATGCCCG GCCGG CGGGCATTGAATGC GCCGCAGTCAGGCAT sqdB 3653305 - 3654525 + | sulfolipid (UDP-sulfoquinovose) biosynthesis protein sqdD 3654721 - 3655545 + | glycosyltransferase (sulfolipid biosynthesis) protein TERM 3389 3656423 - 3656398 - g 81 -12.5 -3.72576 | overlap 3656401 3656402 CGCTGTTCGAGGAAA CAATGCGGCGG CTGG CCGCCGCGCTG CCGGTGTCGCCGCGA TERM 3390 3656420 - 3656401 - g 78 -10.6 -4.00042 | overlap 3656398 3656402 TGTTCGAGGAAACAA TGCGGCGG CTGG CCGCCGCG CTGCCGGTGTCGCCG TERM 3391 3656419 - 3656402 - g 75 -14.1 -2.99704 | overlap 3656401 3656398 GTTCGAGGAAACAAT GCGGCGG CTGG CCGCCGC GCTGCCGGTGTCGCC sqdC 3655620 - 3656507 + | sulfolipid biosynthesis protein TERM 3392 3657147 - 3657157 + G 86 -4.6 -5.1615 | CCATCCTGACAGAAA GCGG CCT TCGC TTTTTTGCCTCTTGG RHE_CH03471 3656537 - 3657181 + | 5-formyltetrahydrofolate cyclo-ligase protein RHE_CH03472 3657209 - 3658009 + | hypothetical protein TERM 3393 3658605 - 3658615 + G 71 -5.4 -4.4261 | CGGCTCGCAGGAGGA TGGA AAC TCCA TTTTCATCTTCGAAA RHE_CH03473 3658231 - 3658956 + | hypothetical protein RHE_CH03474 3659532 - 3658987 - | hypothetical protein RHE_CH03475 3659632 - 3660378 + | hypothetical protein TERM 3394 3660546 - 3660563 + T 78 -6.2 -4.72846 | opp_overlap 3660540, overlap 3660540 3660547 TGTCAACAATCGGAG TCCGGC TTTCGC GCCGGG TTTTTCCATCTCTGG RHE_CH03476 3661597 - 3660596 - | oxidoreductase protein TERM 3395 3661696 - 3661677 - R 100 -12.1 -4.90778 | opp_overlap 3661677 TGCACGCAAACAAAA GGGCCGC GCGATG GCGGCCC TTGTCGAATATCGCA TERM 3396 3661677 - 3661696 + r 77 -12.1 -3.34962 | opp_overlap 3661677 TGCACGCAAACAAAA GGGCCGC GCGATG GCGGCCC TTGTCGAATATCGCA RHE_CH03477 3664036 - 3661721 - | methyl-accepting chemotaxis protein TERM 3397 3662309 - 3662324 + g 74 -4.6 -4.62069 | overlap 3662303 3662304 GCGCATGATCTGGCC GGAGCC GGTC GTCTCC TTTTTGGCGTCGCGG TERM 3398 3663100 - 3663086 - G 70 -12.8 -2.91582 | GATGCCACGGACATA GGCGCG GGC CGCGCC ATCCGCCCGGTCGAA ruvC 3664279 - 3664788 + | Holliday junction resolvase TERM 3399 3664904 - 3664925 + G 73 -8.7 -3.97042 | gap 1, opp_overlap 3664904 GGGATCGCTTGAAGA TCGGCC-CGG GAT CCGAGGTCGA TTTCATTGCTGATGA RHE_CH03479 3664843 - 3665106 + | putative regulator protein of stationary/sporulation gene expression RHE_CH03480 3665087 - 3665503 + | putative nucleic acid-binding protein ruvA 3665517 - 3666131 + | Holliday junction DNA helicase motor protein ruvB 3666214 - 3667254 + | Holliday junction DNA helicase B RHE_CH03483 3667309 - 3668157 + | phosphohydrolase protein TERM 3400 3668801 - 3668823 + G 89 -16.4 -3.53444 | opp_overlap 3668801 GCAAGCGCAGGCAAA GGTCGATCAG CGC CTGATCGACC TTTGCGAAGCACTGA TERM 3401 3668823 - 3668801 - g 91 -16.4 -3.66874 | opp_overlap 3668801 GCAAGCGCAGGCAAA GGTCGATCAG CGC CTGATCGACC TTTGCGAAGCACTGA RHE_CH03484 3668523 - 3669086 + | hypothetical protein TERM 3402 3669126 - 3669088 - T 100 -19.9 -3.07935 | gap 1, opp_overlap 3669095, overlap 3669095 AGCTGATGCATTGAA CGCATAACCCG-AAATCG AAAT CGATTTTCGGGTTATGCG CCAATCACCGTCAAA atvA 3670546 - 3669164 - | acid tolerance and virulence protein RHE_CH03486 3673146 - 3670543 - | hypothetical protein TERM 3403 3671319 - 3671290 - G 72 -7.8 -4.10657 | opp_overlap 3671310, overlap 3671292 CGAGATCTGGTAAAA GACGGCGCG-GCAG CCGG CAGCTCGCGCCG-C TTCGACGAAGCGCCA TERM 3404 3671318 - 3671292 - G 73 -11.5 -3.64984 | gap 1, opp_overlap 3671310, overlap 3671290 AGATCTGGTAAAAGA CGGCGCG-GCAG CCGG CAGCTCGCGCCG CTTCGACGAAGCGCC TERM 3405 3672191 - 3672176 - G 76 -7.5 -4.36914 | GGGTGGTCGACAAAA CGGCG CAACTC CGCCG CCGAGACCGCGAGCA RHE_CH03487 3675517 - 3673370 - | small-conductance mechanosensitive channel transmembrane protein TERM 3406 3673435 - 3673487 + g 74 -6.2 -4.4078 | gap 2, opp_overlap 3673435 3673434 CGGCAGCCTCCAAAT CGGCCTCGCGATCGCC-CGCC-AC CTGCACC GTCGGCACGGCGAACTCGATGCCG TTTTCCTTGAAGGCG RHE_CH03488 3676727 - 3675696 - | 6-phosphogluconate dehydrogenase-like protein TERM 3407 3676585 - 3676624 + g 75 -12 -3.5627 | opp_overlap 3676585 AATTCCTCCAGCGAA GCGGTGCCGGTTGCGCCG AGAC CTGCGAGATCGGCAACGC TTTCCGGCCTGGTGT RHE_CH03489 3677325 - 3676843 - | hypothetical protein RHE_CH03490 3677381 - 3677716 + | ArsR family transcriptional regulator RHE_CH03491 3677794 - 3678330 + | hypothetical protein RHE_CH03492 3678429 - 3679412 + | putative UDP-glucose 4-epimerase protein RHE_CH03493 3680172 - 3679795 - | hypothetical protein RHE_CH03494 3680464 - 3680189 - | hypothetical protein TERM 3408 3680391 - 3680413 + g 70 -10.6 -3.55814 | overlap 3680364 ATGCGCATGTCGACG GCGTTTTCGA GGC TCGAAATCGC TTGTCTCAATTCGTC TERM 3409 3681749 - 3681726 - g 76 -8.8 -4.18488 | AGGCATGGGAAGAAA CTCTGTCCAG ATCG CCGGCCAGAG CGGAATTCTCCCGCC tkt 3680825 - 3682771 + | transketolase TERM 3410 3682794 - 3682773 - f 77 -11.5 -3.65084 | opp_overlap 3682771 AAGCAAAGCTTTAAA GAGGGCGCC TTGA GGCGCTCTC CATCTCCTCAATTCC gap 3682853 - 3683863 + | glyceraldehyde 3-phosphate dehydrogenase protein TERM 3411 3683890 - 3683909 + F 100 -16.4 -4.39287 | opp_overlap 3683882 CTGAATATTCGCAAG CGGCCCGG GAAA CCGGGCCG TTTTGCTATGATTAC TERM 3412 3684248 - 3684261 + G 79 -8.1 -4.3534 | opp_overlap 3684219, overlap 3684215 GCAAAGGACCATCGA CGACG AATT CGTCG TTTTCCTGGTTCCGG RHE_CH03497 3684003 - 3684317 + | hypothetical protein RHE_CH03498 3685042 - 3686916 + | potassium/proton antiporter pgk 3686933 - 3688189 + | phosphoglycerate kinase TERM 3413 3688262 - 3688216 - f 86 -3.6 -5.40072 | opp_overlap 3688215, overlap 3688217 3688219 TTGGCGCGAAAAAAA GCATT-CGGCGTCGCACCTTGC AACGG GCG-GGTGCGGCGCCGCAAAGG CAATTTAGCAGGCTT TERM 3414 3688258 - 3688219 - f 70 -9.9 -3.49966 | gap 1, opp_overlap 3688215, overlap 3688217 3688216 GCGCGAAAAAAAGCA TTCGGCGTCGCACCTTGC AACGG GCG-GGTGCGGCGCCGCA AAGGCAATTTAGCAG fbaB 3688477 - 3689499 + | fructose-bisphosphate aldolase protein TERM 3415 3689644 - 3689675 + F 78 -13 -3.25823 | CTCCTCATGTATTGA TTCATTCACGGCGC AGAC GCGCCGTGGCTGGA TTCCTGTGACAGGCA phzF 3689852 - 3690775 + | phenazine biosynthesis protein RHE_CH03502 3690969 - 3690805 - | hypothetical protein TERM 3416 3690943 - 3690971 + g 77 -2.3 -5.08015 | overlap 3690931 3690946 3690947 CGCCATGGCAAGGAT GAGCGGCAAGGCT ATC AGCTTTGTCATGC TTTATTTTTTCCGTT TERM 3417 3691894 - 3691907 + G 76 -9.5 -4.00782 | CGCCATGATGCAGTT GCCGG CCGG CCGGC TTTCTGATCGTATCG RHE_CH03503 3691142 - 3692422 + | transporter permease protein TERM 3418 3692630 - 3692615 - g 72 -2.4 -4.78237 | overlap 3692616 GACCGCAGAAGAAAA CCGCCC ACGA GATCGG CGCCGATCTCTCCAT RHE_CH03504 3692578 - 3692769 + | hypothetical protein TERM 3419 3692904 - 3692936 + F 74 -2.8 -4.92363 | gap 1 GGCTTTCTCTGGATC TCAGA-CAGTTTTCC AAGC GGTGAATTGGTCTGA TTTTTCTCCCTGTTT TERM 3420 3692958 - 3692980 + F 91 -9.9 -4.7373 | gap 1, overlap 3692960 TCCCTGTTTTACCTT GA-GAGCCGC TTTT GCGGCTCTTC TTTTTGCTGCCGTCG TERM 3421 3692960 - 3692977 + F 95 -12.7 -4.47707 | overlap 3692958 CCTGTTTTACCTTGA GAGCCGC TTTT GCGGCTC TTCTTTTTGCTGCCG RHE_CH03505 3693161 - 3693676 + | hypothetical protein TERM 3422 3693705 - 3693725 + T 100 -11.8 -5.45652 | opp_overlap 3693705 GAATTTTATATGAAA CCGGCTGC TCCAC GCGGCCGG TTTTTTGTTGCCGAT TERM 3423 3693725 - 3693705 - T 75 -9.6 -3.84712 | opp_overlap 3693705 GAATTTTATATGAAA CCGGCTGC TCCAC GCGGCCGG TTTTTTGTTGCCGAT TERM 3424 3693786 - 3693770 - T 100 -11.5 -5.1925 | opp_overlap 3693770 3693768 GCACAACGCAAAAAA GCCCGGC AAA GCCGAGC TCTTTCAAATTCCGT rpmE 3694036 - 3693815 - | 50S ribosomal protein L31 TERM 3425 3694137 - 3694107 - H 74 -7.5 -4.21631 | overlap 3694108 AACCGATTGAATAAA TGAAGCCGCAGTC GTGAT GGCTACGGCTTCC CATTAGGATGGCGTG TERM 3426 3694136 - 3694108 - H 71 -11 -3.12256 | overlap 3694107 ACCGATTGAATAAAT GAAGCCGCAGTC GTGAT GGCTACGGCTTC CCATTAGGATGGCGT TERM 3427 3694281 - 3694263 - H 86 -5.8 -5.07652 | opp_overlap 3694273, overlap 3694264 CTGGGGAAAACAAAA GGCGGTCG CTG CGTCCGCT TGGGCGGCTGACGCC TERM 3428 3695166 - 3695204 + G 75 -11.7 -3.62224 | gap 2, overlap 3695167 AGGTCTGGGGCGAAC TCTC-G-CAGGCGGCCGGC GCC GCCGACCGCCTGACCGAGC TTCTTGACGAGGTCT TERM 3429 3695167 - 3695203 + G 78 -15.2 -2.77013 | gap 2, overlap 3695166 GGTCTGGGGCGAACT CTC-G-CAGGCGGCCGGC GCC GCCGACCGCCTGACCGAG CTTCTTGACGAGGTC RHE_CH03507 3694304 - 3696031 + | multidrug ABC transporter ATP-binding protein TERM 3430 3696011 - 3696043 + F 71 -6.9 -4.25104 | gap 1, opp_overlap 3696007 GCCGCCAACGAGGAC GTGCTCGCCCCGGC GAAATA GCCGAG-CGCGCAC TTTTCCTGCAGACCG TERM 3431 3696253 - 3696269 + G 72 -7.9 -4.11216 | CTTGTGCTCGGCGGG TCCGCCG GCG CTGCGGA TTTTCCCGATCGCGC TERM 3432 3696430 - 3696393 - g 84 -15.6 -3.30124 | GGTGATCGTCCAGAA CGTTGCCGGCGCCG GTGGCAATCT CGGCGCCGGCAATG TCGCCCGCGCCGAGC RHE_CH03508 3696175 - 3697167 + | hypothetical protein RHE_CH03509 3697329 - 3697517 + | hypothetical protein TERM 3433 3698006 - 3698016 + G 72 -2.4 -4.68593 | opp_overlap 3698006 CCGGAGGTCAAGGAA CAGC TCG GCGG TTTTTACCTGATCGA RHE_CH03510 3697787 - 3698125 + | hypothetical protein RHE_CH03511 3698133 - 3699383 + | RNA polymerase ECF-subfamily sigma factor RHE_CH03512 3700415 - 3699384 - | hypothetical protein RHE_CH03513 3701522 - 3700419 - | hypothetical protein suhBch 3702435 - 3701635 - | myo-inositol-1(or 4)-monophosphatase protein cheBch2 3703731 - 3702634 - | chemotaxis-specific methylesterase protein cheRch2 3704597 - 3703740 - | chemotaxis methyltransferase protein cheW3 3705101 - 3704625 - | chemotaxis signal transduction protein RHE_CH03518 3707131 - 3705104 - | putative methyl-accepting chemotaxis protein TERM 3434 3705241 - 3705264 + g 75 -14.6 -2.73875 | gap 1, overlap 3705238 CAGGCTTGCGCATCG CGGC-CGCAGC CGG GCTGCGCGCCG TCATCTTGACGGCAG TERM 3435 3706776 - 3706788 + g 74 -4.7 -4.56597 | GTCTGGGCTTCCAGA GCCAG CTC CAGGC TTTTTGCAGGACCGG RHE_CH03519 3708954 - 3707152 - | putative methyl-accepting chemotaxis protein TERM 3436 3707235 - 3707263 + g 95 -16.7 -3.90744 | overlap 3707258 CCTTCACGCGTGCCT GCTGGCCGACAAC GCT GTTGGCGGCCGGC TTCTTTGCCGCCGGC TERM 3437 3707574 - 3707595 + g 75 -12.3 -3.61517 | gap 1, opp_overlap 3707544 GAATGTCGGGCACCA GCCGGCCGAG CAT CTCG-CCGGC TTCTTGGGCGGCCGT RHE_CH03520 3711041 - 3709338 - | putative methyl-accepting chemotaxis protein TERM 3438 3710329 - 3710347 + g 74 -2.4 -4.85599 | gap 1 TCGCCGATTTCGTCA TGGCTCG TAATAT CG-GCCA TTTTTGTCAGGTCGC cheW4 3711582 - 3711073 - | chemotaxis signal transduction protein TERM 3439 3711210 - 3711221 + g 76 -5.8 -4.57569 | CGACGCTCGGTGGTG CCTC GCTC GAGG TTTTTGCGAGCGTCG RHE_CH03522 3713630 - 3711579 - | putative chemotaxis two-component sensor histidine kinase protein TERM 3440 3713357 - 3713403 + g 76 -12.9 -3.53444 | gap 1, opp_overlap 3713366, overlap 3713358 3713387 3713388 GCATATGGTCCTGGG CGGCGAGAACGGCGGCGACGAG TTCG CTGGTCGCC-CCGACCTCGCCC TTTCGGACGCGGTCG TERM 3441 3713358 - 3713402 + g 81 -16.4 -2.71924 | gap 1, opp_overlap 3713366, overlap 3713357 3713387 3713388 CATATGGTCCTGGGC GGCGAGAACGGCGGCGACGAG TTCG CTGGTCGCC-CCGACCTCGCC CTTTCGGACGCGGTC cheY3 3713995 - 3713627 - | chemotaxis two-component response regulator protein RHE_CH03524 3714321 - 3713992 - | hypothetical protein TERM 3442 3714956 - 3714928 - g 80 -5.9 -4.67982 | opp_overlap 3714928, overlap 3714923 3714929 GGTCAGCGAAGAAAA CCGCCAGCAGG CGCTCAT CTTGCTGGCGC AAACCGGCAGGGAAC TERM 3443 3715656 - 3715670 + G 73 -11.4 -3.54424 | GCAATTTCATGCGCG CGCTGG AAT CCAGCG TTTCCGCCGCTGACG RHE_CH03525 3714791 - 3716401 + | putative chemotaxis sensory transducer protein TERM 3444 3716535 - 3716514 - T 75 -9.4 -4.04174 | gap 1, opp_overlap 3716512 CTTTAGAGAATGAAA CGCGCGGCG GCTAT CGCCG-GCG GAATTTATTGGCGGC TERM 3445 3716545 - 3716563 + T 75 -11.7 -3.45023 | opp_overlap 3716543 CCGGCGGAATTTATT GGCGGCA TCGAT TGCCGCC TTCTGCTGATCGTCC RHE_CH03526 3717657 - 3716524 - | hypothetical protein TERM 3446 3716610 - 3716597 - GT 77 -2.3 -4.9725 | overlap 3716598 ATCCCGAGATAAAAA TCCTC GAGC GAGGG ATCGGCAAGCCCAGC TERM 3447 3716744 - 3716726 - GT 70 -11 -2.90075 | opp_overlap 3716725 3716726 TTCTGCGCAACGACA TTGCCGCC GTT GGCAGCAA GTTTCAGCCATTCGA TERM 3448 3716833 - 3716881 + gT 76 -7.3 -4.25104 | gap 2, overlap 3716866 GAGCTCGGCCGTGTC GAAGCCGGCGCGCGCGGCGCGCG CCATC CACTCGCGG-GCGAGCCG-CTTC TTTTCCTCAGGCAGG TERM 3449 3716866 - 3716878 + gT 71 -6.2 -4.25256 | overlap 3716833 GCGCGCCATCCACTC GCGG GCGAG CCGC TTCTTTTCCTCAGGC thiEch 3718360 - 3717617 - | thiamine-phosphate pyrophosphorylase TERM 3450 3717775 - 3717753 - GH 75 -12.6 -3.05844 | opp_overlap 3717736 3717735, overlap 3717725 TCGGCGACGGCAAGA GCCGACGCCG GAT CGGTGCCGGC CATGACGATGCAGGG RHE_CH03528 3718379 - 3719143 + | putative transporter, permease protein RHE_CH03529 3719211 - 3719471 + | transcriptional regulator protein TERM 3451 3719528 - 3719567 + F 85 -14.3 -3.47078 | gap 1, opp_overlap 3719518 3719529 3719530, overlap 3719529 GACAAGCAGACGCAA ACGCGCCAGCCGCGATGC CGCGA GCATCG-GGCTGGCGCAA TTCTGGTGTCAAATC TERM 3452 3719529 - 3719566 + F 86 -17.8 -2.67925 | gap 1, opp_overlap 3719518 3719529 3719530, overlap 3719528 ACAAGCAGACGCAAA CGCGCCAGCCGCGATGC CGCGA GCATCG-GGCTGGCGCA ATTCTGGTGTCAAAT TERM 3453 3719566 - 3719529 - f 100 -20.7 -3.7456 | gap 1, opp_overlap 3719529 3719528, overlap 3719518 3719530 ACAAGCAGACGCAAA CGCGCCAGCCGCGATGCC GCG AGCATCG-GGCTGGCGCA ATTCTGGTGTCAAAT TERM 3454 3719565 - 3719530 - f 100 -22 -2.84013 | gap 1, opp_overlap 3719529 3719528, overlap 3719518 3719529 CAAGCAGACGCAAAC GCGCCAGCCGCGATGCC GCG AGCATCG-GGCTGGCGC AATTCTGGTGTCAAA TERM 3455 3719768 - 3719797 + F 82 -5.7 -4.86001 | gap 1, opp_overlap 3719753 GGAGCTGTTCTGAGT GCATGCAGCTCCTC CTC GAG-AGCGACATGC TTTTTCTGGAGTGAT RHE_CH03530 3720064 - 3720267 + | hypothetical protein TERM 3456 3720361 - 3720349 - gf 72 -2.6 -4.79223 | GGAGACCATGAAAAA CGCG GCCGA CACG CTGGAAGCGCTGGAA purE 3720341 - 3720778 + | phosphoribosylaminoimidazole carboxylase catalytic subunit protein purK 3720724 - 3721845 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 3457 3721957 - 3721935 - f 74 -10.5 -3.65351 | opp_overlap 3721937, overlap 3721937 GCACCCCCACCTAAA GAGCGCGCC CCGAC GGCGCGCTT TTGATTGTTAAAGTT TERM 3458 3721955 - 3721937 - f 79 -13.1 -3.40775 | opp_overlap 3721937, overlap 3721935 ACCCCCACCTAAAGA GCGCGCC CCGAC GGCGCGC TTTTGATTGTTAAAG TERM 3459 3721937 - 3721955 + F 95 -13.1 -4.56133 | opp_overlap 3721935 3721937 ACCCCCACCTAAAGA GCGCGCC CCGAC GGCGCGC TTTTGATTGTTAAAG rpmJ 3722018 - 3722143 + | 50S ribosomal protein L36 TERM 3460 3722236 - 3722268 + F 100 -17.1 -4.99134 | gap 1 ATTTGTTTGATCTTC GGCGC-TGGCGGAC TAATAT GTCCGCCATGCGCC TTTTTGCTTTGACGT RHE_CH03534 3722253 - 3722867 + | hypothetical protein TERM 3461 3723174 - 3723210 + G 83 -15.2 -3.15996 | gap 1, overlap 3723173 3723179 3723180 CTCGATCAGCTCGTC GCCTTTCGCGCCCGGCT CGAA GGCCGGGCG-GAAATGC TGTTCGTCGATCGTC TERM 3462 3723612 - 3723598 - g 81 -2.7 -5.13473 | overlap 3723599 ACTACATCGAAAAAA CCGGC CCGTC GCTGG TGCTGCGGCCGCGCA RHE_CH03535 3723078 - 3724004 + | lactone-specific esterase protein ggt2 3724129 - 3725865 + | gamma-glutamyltranspeptidase protein TERM 3463 3725878 - 3725845 - f 82 -13.7 -3.48276 | opp_overlap 3725846 GCCCGCGCGACAGAA GGCTCGGCGGCCGGC TATT GACGGACGGCGAGCC GCTGGCATAGGCGCA TERM 3464 3726404 - 3726376 - g 71 -9.4 -3.73953 | opp_overlap 3726402, overlap 3726377 AGGATCGCGACGAAA TCGGCGCCCGGC TCTCC GCCGAGCGCGGC CTGACGCTGATCAAG TERM 3465 3726403 - 3726377 - g 70 -12.9 -2.84051 | opp_overlap 3726402, overlap 3726376 GGATCGCGACGAAAT CGGCGCCCGGC TCTCC GCCGAGCGCGG CCTGACGCTGATCAA TERM 3466 3726825 - 3726856 + G 71 -9.2 -3.69216 | overlap 3726830 CTGAAGATCGTCGTC GAGCCGGGCGGCGC CGTG GCGCTGGCCGCCGC TCTTTTCCATGGCGA TERM 3467 3726830 - 3726858 + G 76 -8.1 -4.18018 | gap 1, overlap 3726825 GATCGTCGTCGAGCC GGGCGGC-GCCG TGGCGC TGGCCGCCGCTC TTTTCCATGGCGAGG RHE_CH03537 3725988 - 3726962 + | threonine dehydratase protein RHE_CH03538 3727971 - 3727018 - | LysR family transcriptional regulator RHE_CH03539 3728032 - 3728451 + | hypothetical protein RHE_CH03540 3728448 - 3729002 + | hypothetical protein RHE_CH03541 3729637 - 3729005 - | amino acid efflux LysE family protein TERM 3468 3729416 - 3729386 - G 74 -9 -3.88291 | opp_overlap 3729393, overlap 3729395 CATGATGCCGAGAAA GGTGAGATAGGCAG CAC CTGCCCATTTCAGC ATCGAGAACCAGAAT TERM 3469 3729527 - 3729499 - G 78 -10.3 -4.00411 | gap 1 GAAAATCCGAAAGAA CCGCGCCGACCA TGCCGG CGGTCG-CGCGG CGCAGCCCATGCCGA TERM 3470 3729743 - 3729717 - R 100 -17.3 -5.31059 | opp_overlap 3729717 ACATGAACGAAAAAA GCCCGCCGCCT TTCTC AGGCAGCGGGC TTCATCACGGATGCG TERM 3471 3729717 - 3729743 + r 83 -15.1 -3.14931 | opp_overlap 3729717 ACATGAACGAAAAAA GCCCGCCGCCT TTCTC AGGCAGCGGGC TTCATCACGGATGCG pykA 3731207 - 3729765 - | pyruvate kinase RHE_CH03543 3731689 - 3731204 - | hypothetical protein RHE_CH03544 3731888 - 3732676 + | putative N-formylglutamate amidohydrolase protein RHE_CH03545 3732703 - 3733008 + | hypothetical protein RHE_CH03546 3733100 - 3733363 + | hypothetical protein TERM 3472 3733406 - 3733389 - T 70 -9.8 -3.53012 | opp_overlap 3733389 TCGCTGCTTTCGAAA GCCGCC TCCTCC GGCGGC TTTTCTTTTGCGCCG TERM 3473 3733389 - 3733406 + T 100 -9.8 -5.07652 | opp_overlap 3733389 TCGCTGCTTTCGAAA GCCGCC TCCTCC GGCGGC TTTTCTTTTGCGCCG TERM 3474 3733490 - 3733471 - T 100 -15 -5.20333 | opp_overlap 3733471 CAGTCAGAAGAAAAA CCGCCGGA TCAC TCCGGCGG TTTTTCGGTCTGACG TERM 3475 3733471 - 3733490 + T 100 -15 -4.70659 | opp_overlap 3733471 CAGTCAGAAGAAAAA CCGCCGGA TCAC TCCGGCGG TTTTTCGGTCTGACG RHE_CH03547 3735359 - 3733518 - | hypothetical protein TERM 3476 3735129 - 3735155 + g 72 -3.7 -4.59109 | gap 1 CTTCGGGTCGAACTT GCCGTTA-CGCT TGTA GGTGATGACGGC TTTTTCGCCGGTATG tacA 3737080 - 3735539 - | sigma-54-dependent transcriptional regulator (activator) protein TERM 3477 3735945 - 3735900 - GH 75 -11.2 -3.53811 | gap 2 GCGATCTGCGGGAAA TCCGCCTCGGTCAGCTCCGGCC CCTC GGCCAGAAC-GACCGC-ACGGA AGATCGCGTTTTCCA TERM 3478 3736382 - 3736399 + gH 75 -4 -4.72272 | overlap 3736383 3736395 AATGTGGCGTTCAGT CGCGCC GGTGAA GGCGCC TTTTTCGTGGCCGAA TERM 3479 3738549 - 3738563 + GH 73 -12.8 -2.62184 | ACCAGGTTCTTGCCG GCGCGC AGG GCGCGC TGATGTGCCAGACAC pepF 3737045 - 3739144 + | oligoendopeptidase F protein TERM 3480 3739998 - 3739983 - gfH 71 -11.8 -2.7464 | overlap 3739970 3739982 AAGGCACTGCCAAAC GCGGCG CCAC CGCCGC CGAGGATGCCGAAAT TERM 3481 3740413 - 3740432 + GFH 78 -4.2 -4.8622 | overlap 3740416 CGGTAGGGCGGTCTT CAATGTCG GCGG CGGCATCG TTTTTGATTCCACAG pabB 3739361 - 3740518 + | para-aminobenzoate synthase component I TERM 3482 3740508 - 3740522 + GF 75 -4.2 -4.68593 | opp_overlap 3740508 TTGGCGATCAATGGA TCGCTC GAT GACCGA TTTTTCGCTGATCGA RHE_CH03551 3740467 - 3741144 + | hypothetical protein RHE_CH03552 3741147 - 3741431 + | hypothetical protein TERM 3483 3742100 - 3742056 - g 75 -4 -4.7416 | gap 1, overlap 3742057 3742058 GGAAAAGGCGAAAAA CCCCGGC-GGCGCCACCGCCG TCTC CACCTGCGGCGCCAATCCGGG CATGGTCTCCTGGTT hss 3741598 - 3743049 + | homospermidine synthase protein TERM 3484 3743073 - 3743092 + F 100 -15 -4.84359 | opp_overlap 3743073 GTGCAACTTTGAAGA TGCCCGCC GCGA GGCGGGCA TTTTTGTAACGCTGG TERM 3485 3743092 - 3743073 - f 83 -15 -3.06261 | opp_overlap 3743073 GTGCAACTTTGAAGA TGCCCGCC GCGA GGCGGGCA TTTTTGTAACGCTGG omp3 3743220 - 3743588 + | outer membrane lipoprotein TERM 3486 3743685 - 3743708 + F 79 -2.2 -5.252 | overlap 3743687 3743690 CACCTCGAAGGGGAT GACGCCCGCT AGAG AGCTGGCCGC TTTTTTGTGCCGGTC TERM 3487 3743790 - 3743816 + F 74 -10.8 -3.54459 | opp_overlap 3743803 3743804 TCTGATGGAACATCT GCTCGCTGGG AAACCGC CCCGGCGGGC TTTGGAAGGGATTGG RHE_CH03555 3743874 - 3745880 + | 5`-nucleotidase protein TERM 3488 3745904 - 3745929 + F 100 -19.7 -5.05113 | opp_overlap 3745901 GTCTCGACACCATCG GCCGGCTCGGG GTTT CCCGGGCCGGC TTTTCTTTCTATAGG hemH 3746004 - 3747038 + | ferrochelatase RHE_CH03557 3747182 - 3748213 + | putative membrane protease subunit protein RHE_CH03558 3748217 - 3748672 + | hypothetical protein kpsF 3749668 - 3748673 - | polysialic acid capsule expression protein TERM 3489 3749994 - 3750019 + G 74 -9.7 -3.93236 | opp_overlap 3749986 3750018 GAACAATGCCGCAGC CGCCGGTTTCG ATGA CGAAATCGACG TTTCTACCGTTCCTG TERM 3490 3750947 - 3750991 + G 81 -12.8 -3.73224 | opp_overlap 3750947 CGGATTTCGAGGACA GCCGGCTCGCCTCGATCG ATACGGCCA CGCTCGATGCGAGCCTGC TTTGGTCGCCGATCC RHE_CH03560 3749809 - 3751344 + | hypothetical protein TERM 3491 3751373 - 3751346 - T 100 -24.2 -3.71917 | opp_overlap 3751334 AGCTGAAACGCTAAA CGCCGCGCCTCC GGTG GGAGGCGCGGCG CTCGATCATCCATAG exoN 3752288 - 3751401 - | UTP-glucose-1-phosphate uridylyltransferase protein TERM 3492 3753386 - 3753369 - g 73 -8.3 -4.08064 | opp_overlap 3753374, overlap 3753356 3753370 AAGCCGTGCTGAAAA TGCCGGC CGGA GCCGGCG GCCCCGGCTTTCTGA TERM 3493 3753374 - 3753394 + G 86 -13.9 -3.96148 | opp_overlap 3753356 3753370 3753369 GTGCTGAAAATGCCG GCCGGAGCC GGC GGCCCCGGC TTTCTGATGACGGCA RHE_CH03562 3752492 - 3753715 + | membrane-bound lytic murein transglycosylase protein TERM 3494 3753859 - 3753841 - g 71 -6 -4.30576 | TGCCTATGACGAAAA CTGATCGA ACC CCAATCAG CTGGCTCGCGCTCGC RHE_CH03563 3753807 - 3755039 + | hypothetical protein RHE_CH03564 3755691 - 3755065 - | hypothetical protein TERM 3495 3755853 - 3755871 + r 75 -11.7 -3.38951 | opp_overlap 3755853 GCGCACAATCAAAAA CTCCGCC GGAAA GGCGGAG TTCGTATCTTCGTCG TERM 3496 3755871 - 3755853 - R 100 -11.7 -4.93365 | opp_overlap 3755853 GCGCACAATCAAAAA CTCCGCC GGAAA GGCGGAG TTCGTATCTTCGTCG gltD 3757358 - 3755904 - | glutamate synthase subunit beta gltB 3762304 - 3757583 - | glutamate synthase large subunit protein TERM 3497 3758294 - 3758312 + gr 70 -10.2 -3.28003 | opp_overlap 3758273 GAAGCTCTGGCCTGC CGTGCCGC GAA GCGTCACG TTGATCGTATCTTCC TERM 3498 3759617 - 3759632 + gr 70 -10.4 -3.36273 | opp_overlap 3759573, overlap 3759611 TACCGGCTTGCGGCC GAGCGC CTCG GCGCTC TTGATCTTGAAGAGC TERM 3499 3760414 - 3760445 + gr 70 -10.2 -3.25823 | overlap 3760395 3760416 GCATGCCGGCAGCGC CACGCTCGATATCA TAGG TGAAATCGAGCGTC TTGGTGTCGAACCGG TERM 3500 3760416 - 3760443 + gr 75 -12.8 -3.19602 | overlap 3760395 3760414 ATGCCGGCAGCGCCA CGCTCGATATCA TAGG TGAAATCGAGCG TCTTGGTGTCGAACC RHE_CH03567 3762719 - 3762276 - | hypothetical protein TERM 3501 3762339 - 3762325 - GH 79 -12.8 -3.53012 | opp_overlap 3762323 3762326 3762332 TTCCTCCTGTCGAAA CCCGCG GGC CGCGGG CGGCTTTTCGTCATG TERM 3502 3762332 - 3762343 + gH 76 -7.2 -4.30576 | opp_overlap 3762325, overlap 3762323 3762326 TGTCGAAACCCGCGG GCCG CGGG CGGC TTTTCGTCATGCGCC TERM 3503 3762592 - 3762572 - GH 81 -10.5 -4.14392 | opp_overlap 3762572 3762571 3762574 CCGCAATGGCCAAAA TAGGACAGC AAC ACTGTCCTA ATTCATCTGTTCTAT TERM 3504 3762969 - 3762959 - g 74 -2.4 -4.84359 | CGATCTCGATAAAAA GGTC GAG GCCC GCTTCTGCGAGATCT TERM 3505 3762990 - 3763002 + G 80 -5.5 -4.71426 | overlap 3762978 TGCGAGATCTTCGAA CGGGA GGT TTCCG TTTTCTTCGTCGCCA RHE_CH03568 3762846 - 3763898 + | threonine aldolase protein RHE_CH03569 3764833 - 3763946 - | LysR family transcriptional regulator RHE_CH03570 3764888 - 3765892 + | putative Na+/bile acid cotransporter protein TERM 3506 3765946 - 3765921 - T 100 -12.5 -5.10208 | opp_overlap 3765920 3765919 3765923, overlap 3765923 GAACGGCAATAAAAA CACGGCGCCCC GATC GGAGCGCCGTC CATTGTCCCTGAGTG TERM 3507 3765923 - 3765944 + T 73 -12.9 -2.6063 | opp_overlap 3765921 3765923, overlap 3765920 3765919 ACGGCAATAAAAACA CGGCGCCCC GATC GGAGCGCCG TCCATTGTCCCTGAG TERM 3508 3765944 - 3765923 - T 100 -15.1 -4.16909 | opp_overlap 3765923 3765920 3765919, overlap 3765921 ACGGCAATAAAAACA CGGCGCCCC GATC GGAGCGCCG TCCATTGTCCCTGAG ibpA 3766439 - 3765969 - | molecular chaperone small heat shock protein TERM 3509 3766175 - 3766206 + g 84 -10.8 -4.19577 | opp_overlap 3766182 3766183, overlap 3766176 TGGCAATGCCGCGGT AGAGGAATTCGCCG CCTT CGGCGGTTTCCTCG TTCTTTTCACCCTTC TERM 3510 3766176 - 3766205 + g 78 -14.3 -3.11023 | opp_overlap 3766182 3766183, overlap 3766175 GGCAATGCCGCGGTA GAGGAATTCGCCG CCTT CGGCGGTTTCCTC GTTCTTTTCACCCTT TERM 3511 3766724 - 3766760 + H 100 -17.3 -4.69027 | gap 1, opp_overlap 3766722 3766721 CTTCAGTCTAAACTT GGGCCGGCCGCGAGCG CCCTCA CGCTCCCG-CCGGCCC TTTTTCCGTCGCTTT pldB 3766840 - 3767814 + | lysophospholipase L2 protein RHE_CH03573 3768694 - 3767885 - | monophosphatase protein TERM 3512 3767932 - 3767954 + g 76 -9.1 -4.07568 | AGACCGCGCGGCTTC CGGCGGC GATGATCGA GCCGCCG TTTTCCGGCCGCCCG TERM 3513 3768859 - 3768882 + r 91 -8.8 -5.055 | overlap 3768862 TTTCCTCCCTAGACT TAGCCGCGCT GACA AGCGCGGTTC TTTTTTGGCCCTTGC TERM 3514 3768862 - 3768879 + r 95 -12.7 -4.62085 | overlap 3768859 CCTCCCTAGACTTAG CCGCGCT GACA AGCGCGG TTCTTTTTTGGCCCT RHE_CH03574 3769820 - 3768939 - | N-formylglutamate amidohydrolase protein RHE_CH03575 3770009 - 3770371 + | two-component response regulator protein TERM 3515 3770576 - 3770553 - f 89 -11 -4.19735 | opp_overlap 3770553 TCGCTGAAAAGCAAA GGCCTTTCGA GAAA TCGAGAGGCC TTTTTACATGGTGGC TERM 3516 3770553 - 3770576 + F 100 -13.2 -4.68593 | opp_overlap 3770553 TCGCTGAAAAGCAAA GGCCTTTCGA GAAA TCGAGAGGCC TTTTTACATGGTGGC TERM 3517 3771085 - 3771095 + G 74 -2.4 -4.84359 | overlap 3771081 TCAAATCTCGACCGG CAGC GCC GCAG TTTTTCTGCCCCTCG RHE_CH03577 3770908 - 3771219 + | hypothetical protein TERM 3518 3772259 - 3772216 - g 72 -12.4 -3.28924 | opp_overlap 3772225 3772228 3772231 3772236, overlap 3772203 3772224 CAGCCCGTTCTACAA CGGCGAAACCGCCAACAACG TCGG CGTTGCTGTTGGTCTCGGCG GCAAGGCCGGTGCCT TERM 3519 3772333 - 3772319 - g 71 -8.5 -3.86312 | ACCGACAACGAAGAA GGCGC CGTCC GCGCC ATGGGTACGGTTGCC ropAch3 3771629 - 3772672 + | porin outer membrane protein TERM 3520 3773258 - 3773229 - g 74 -4.9 -4.58283 | gap 1, opp_overlap 3773230 3773242 3773250, overlap 3773230 3773232 CAAGGGCTGCAAAAA CGAGCTTGCCAGCG TCA CGCTGGCCAACG-G TTCGGTGACCTTCAT TERM 3521 3773256 - 3773232 - g 70 -12.1 -3.23708 | opp_overlap 3773230 3773242 3773250, overlap 3773229 3773230 GGGCTGCAAAAACGA GCTTGCCAGCG TCA CGCTGGCCAAC GGTTCGGTGACCTTC RHE_CH03579 3773050 - 3773544 + | hypothetical protein RHE_CH03580 3774258 - 3773551 - | hypothetical protein TERM 3522 3774381 - 3774363 - H 100 -17.4 -3.74077 | CGCTAGACAGCGAAA CGCCCGGC ATC GCCGGGCG CCTATCCCACAGGAG TERM 3523 3775051 - 3775062 + G 72 -4.4 -4.57837 | overlap 3775057 ATTGGTGCCGGGCCC CTCT GGCG AGAG TTTTTACGGCGCTCT TERM 3524 3775090 - 3775113 + G 78 -5.1 -4.7497 | overlap 3775091 TCTCGTGATGTCGGT ACCGCCTGC AACTCA GCCGGCGGA TTTTTCATCGATGCA TERM 3525 3775145 - 3775173 + G 81 -6.7 -4.6856 | gap 1, overlap 3775148 AAGCTCACCATGCCT CGTCAGCATGCC CGTTGT GGCATGCCG-CG TTTTTCCACTATTTC RHE_CH03581 3774925 - 3776316 + | hypothetical protein TERM 3526 3776324 - 3776305 - T 75 -5.7 -4.57073 | gap 1 GACCGGCGGGAAAAA CTGCACGC TTGAC GCG-GCAG ACAATTGAAGGTCGC TERM 3527 3776378 - 3776405 + T 93 -13.4 -3.96298 | opp_overlap 3776380, overlap 3776380 CTGCTCAGACAAAAA AAGCCCGCGACC ATCC GGTTGCGGGCTG TTTCATTCGTGCATA TERM 3528 3776403 - 3776380 - T 100 -13.8 -5.71712 | opp_overlap 3776380 3776378 GCTCAGACAAAAAAA GCCCGCGACC ATCC GGTTGCGGGC TGTTTCATTCGTGCA TERM 3529 3776380 - 3776403 + T 91 -16 -3.56844 | opp_overlap 3776380, overlap 3776378 GCTCAGACAAAAAAA GCCCGCGACC ATCC GGTTGCGGGC TGTTTCATTCGTGCA TERM 3530 3776730 - 3776701 - T 81 -9.4 -4.44608 | gap 2 GCCATGCAAAAAGAA GAGGCCGGCGCATG TTTC CATG-GCCG-CCTC CAGGCAGGGGTAACC TERM 3531 3776733 - 3776750 + T 93 -5.5 -5.52079 | CCATGGCCGCCTCCA GGCAGGG GTAA CCTTGTC TTTTTCTTTTAATCT RHE_CH03582 3778276 - 3776759 - | hypothetical protein TERM 3532 3778352 - 3778340 - R 70 -3.3 -4.77757 | overlap 3778342 3778343 CGCGAAAAATCAAAA GAGCT GAC AGCGC GTCCGCGCGGTCAGA TERM 3533 3778367 - 3778342 - R 73 -8.9 -3.99386 | overlap 3778340 3778343 CGAAAAATCAAAAGA GCTGACAGCGC GTCC GCGCGGTCAGA AGAACAGATGTTCAA TERM 3534 3778366 - 3778343 - R 73 -12.4 -2.98005 | overlap 3778340 3778342 GAAAAATCAAAAGAG CTGACAGCGC GTCC GCGCGGTCAG AAGAACAGATGTTCA RHE_CH03583 3778854 - 3778363 - | hypothetical protein TERM 3535 3778832 - 3778788 - G 91 -9.3 -4.44797 | gap 2, opp_overlap 3778800 3778830, overlap 3778801 TGACGAAGAGGAAAA CGGCAATGATGAACGCCGCCC GATCA GGGCGGCGCTCGG--TTGCCG AGGAGGTGTTGTCCT TERM 3536 3778821 - 3778801 - G 84 -15.4 -3.28041 | opp_overlap 3778800, overlap 3778788 AACGGCAATGATGAA CGCCGCCC GATCA GGGCGGCG CTCGGTTGCCGAGGA RHE_CH03584 3779825 - 3778851 - | hypothetical protein TERM 3537 3779111 - 3779133 + g 72 -12 -3.35679 | CTTCCTTCAGCGTCG GCGCATCGAC GCC GTCGATACGC TTGTCGCTGGAGACG TERM 3538 3779609 - 3779643 + g 74 -14.2 -2.57243 | overlap 3779608 3779607 CGATGGTGCCGCCGG CGCCGGGAACGTTCTG GAC CTGTACGTTGCCGGCG ATCTTCTCCTGCTGC RHE_CH03585 3781212 - 3780088 - | iron ABC transporter, substrate-binding protein TERM 3539 3782960 - 3782921 - g 79 -9.3 -4.2349 | gap 3 GGTGGATACGGAAAA CTGGGCGCGCCTCGGTCTGC TGC GC-G-CCGAA-CGCGCCCTG AACCTCAATCCGGAA cyaFch2 3781434 - 3783302 + | adenylate cyclase protein RHE_CH03587 3783396 - 3784073 + | two-component response regulator protein TERM 3540 3784742 - 3784707 - g 84 -11.1 -4.20783 | gap 1, opp_overlap 3784703 ATCCGATCGAACAAA CCGTGCCGAGC-GAGG TCGAG CCGCTGGTCGGCACGG TGAACTCTTTCATGG RHE_CH03588 3784070 - 3785452 + | two-component sensor histidine kinase protein TERM 3541 3788336 - 3788289 - g 82 -11.4 -4.08216 | gap 1 GGACTTGCGTCAAAA CGG-CTTCGATCTCAGCCCTGAA TGG TTCAAGGCTCAGCTCGAATTCCG CTTCCCCTTCTGCGG TERM 3542 3788774 - 3788810 + G 71 -5.6 -4.36914 | opp_overlap 3788768, overlap 3788775 CGGAAGCAAGGCGGC TCGCCCGCTTCGAGCC GTGGG GGCATACGGCGGGCGG TTTTATCCCGCGCGC RHE_CH03589 3785563 - 3788886 + | putative transglutaminase-like protein TERM 3543 3789055 - 3789043 - g 71 -6.2 -4.30987 | overlap 3789045 ATGGTCGACAACAAA GGCG TGGTC CGCC CCGTCTGGCAGCGTT TERM 3544 3789540 - 3789522 - g 78 -10.2 -4.07568 | opp_overlap 3789521 3789520 3789536 CTTCGCGCTTGAAAA CCGCGTCG CGA CGACCCGG GCTTTCTCGGATATC TERM 3545 3790269 - 3790294 + G 81 -10.3 -4.18494 | opp_overlap 3790267 3790268 GGTGAACGGCAAACT CGTGCCGCGGC CGAT GTCGCTGCGCG TTTTCGCTGCCCGTA TERM 3546 3790573 - 3790589 + G 70 -7.9 -4.07568 | opp_overlap 3790546 3790555 GCGCTACGCATCCTG CGCGCCT GGC ATGCGCG TTTTGCCGAAGCCGC RHE_CH03590 3788926 - 3791343 + | hypothetical protein RHE_CH03591 3791373 - 3792227 + | putative transglutaminase-like protein TERM 3547 3793294 - 3793279 - g 71 -4.6 -4.4891 | overlap 3793280 3793281 CCCATCAGCAGAAAA CCGGGC AAGT GCCCAA GAAGTACATCGTCTT RHE_CH03592 3792342 - 3793577 + | hypothetical protein TERM 3548 3793633 - 3793608 - f 90 -11.8 -4.22041 | opp_overlap 3793608 AAAGCCGAAGATAAA GCCGCGTTGG AACAAA CCAGCGCGGC TTTTCGTTATTGCTG TERM 3549 3793608 - 3793633 + F 100 -14 -4.5774 | opp_overlap 3793608 AAAGCCGAAGATAAA GCCGCGTTGG AACAAA CCAGCGCGGC TTTTCGTTATTGCTG TERM 3550 3794602 - 3794558 - g 83 -12.1 -4.07568 | opp_overlap 3794595 GGCTGGCGGGGAAAA CGCGTCAATACGCTGCGCC TCTGGTC GGCGCAGCCGATCGACCCG ATCCTGCTCGATGCC TERM 3551 3795125 - 3795082 - g 81 -12.7 -3.77832 | gap 1 CCGCAAAGGCAAGAA TTTCTCCGA-CAGCGAAATC CGCTC GATTTCGCTGATCGAGGAAA GCGGCGAACGCCGCG TERM 3552 3795139 - 3795126 - g 71 -9.5 -3.76224 | CGCTGATCGAGGAAA GCGGC GAAC GCCGC GTGCGCATGGGCAAT TERM 3553 3795298 - 3795273 - g 82 -6.1 -4.92757 | gap 1, overlap 3795277 GCATCAACAACAAAA CCAACGGCATCA CGC CG-CGCCGCTGG CTGCAGCAGTGCAAT glgP 3793850 - 3796312 + | glycogen phosphorylase protein TERM 3554 3796481 - 3796502 + G 83 -9.5 -4.37092 | gap 1, opp_overlap 3796481 GTGCGGAGGAAGTGA CCGCCAT-GA CGC TCGATGGCGG TTTTATCGGCGAACT glgBch 3796309 - 3798516 + | glycogen branching enzyme TERM 3555 3798628 - 3798646 + G 70 -11.6 -3.24232 | opp_overlap 3798619 3798623, overlap 3798625 AAGGAACTCACCGAC CGGCGTGC CAA GCCCGCCG TCTATTTCGGCGGCA TERM 3556 3799092 - 3799072 - g 74 -2.5 -4.87291 | overlap 3799079 CATGTCAACGAAAAA GATGAGATC TTC GCTTTCATC GAAAAGCCGGCCGAC glgC 3798535 - 3799797 + | glucose-1-phosphate adenylyltransferase glgA 3799864 - 3801243 + | glycogen synthase pgm 3801250 - 3802881 + | phosphoglucomutase TERM 3557 3802908 - 3802947 + G 70 -9.9 -3.64599 | opp_overlap 3802908 CATGCGGGACAGCAA TTCGGCGCGGGGCGCGA TCGTCT TCGAGACCGGCGTCGAA TTTGCCGTGTGGTCG TERM 3558 3803296 - 3803315 + G 72 -4.2 -4.61199 | opp_overlap 3803296 3803295, overlap 3803295 GCCGCAATCGACAAG CCGCTC TTCAAAGC GGGCGG TTTTATCTATGAAGT TERM 3559 3804693 - 3804721 + G 72 -7.4 -4.19817 | opp_overlap 3804707 CGGCGACCGCTCCTC GCGCGGCAGG AACACCCGG CTTGCCGTGC TTTTCAATCGCTCGG TERM 3560 3804836 - 3804852 + G 72 -2.1 -4.72272 | overlap 3804824 3804837 CCCGCGTGACCGTCA AGCCACG CTC CGTTGCC TTTTTCGTAGAAAAA glgXch 3802894 - 3804870 + | glycosyl hydrolase (glycogen debranching) protein nodN 3804959 - 3805447 + | dehydratase nodulation protein TERM 3561 3805552 - 3805526 - T 77 -10.8 -3.74251 | overlap 3805527 CACATTGGTACGAAA TGGGCCGCAACT GTC ATTTGCGGCCCT GAAAATCTCATCTGG TERM 3562 3805551 - 3805527 - T 79 -14.3 -2.84229 | overlap 3805526 ACATTGGTACGAAAT GGGCCGCAACT GTC ATTTGCGGCCC TGAAAATCTCATCTG soxGch 3806142 - 3805594 - | sarcosine oxidase gamma subunit protein TERM 3563 3805745 - 3805722 - G 76 -9.5 -4.07568 | overlap 3805701 CTGCCTTGCCGAAAA CGGTCCGCG AGGCGG CGCCGACCG GAAAGGAAGACAGCG TERM 3564 3805923 - 3805970 + g 100 -14.7 -4.12188 | gap 1, opp_overlap 3805917 CGATCAACAGCCACT CGTCCGGCCCGATCCAGAGCGC CGAGC GCGCACCGGCGC-GGCCGGACG TTTTCGGAGTGGTCG soxAch 3809128 - 3806135 - | sarcosine oxidase alpha subunit protein TERM 3565 3806721 - 3806707 - G 71 -8.5 -3.90588 | overlap 3806716 CACCGGTGAAGGAAA CGCGG AAGAG CCGCG CCGGTACGCCGCAGA soxDch 3809466 - 3809125 - | sarcosine oxidase delta subunit protein TERM 3566 3809487 - 3809509 + r 86 -17.8 -2.52464 | ATTTCCTTCTCCTCC CCTTCTCCCG AGC CGGGAGAAGG TACGTTCAAGGCGGA soxBch 3810829 - 3809576 - | sarcosine oxidase beta subunit protein TERM 3567 3810292 - 3810317 + g 70 -11.7 -3.16564 | CGTGCCGCGCCGTGC CGCCGCGCCGC TGCA GCGCCGCGCCG TTGATCGGATAGCGC TERM 3568 3810902 - 3810924 + H 77 -8.4 -4.20136 | opp_overlap 3810891 3810901, overlap 3810905 AAATGCGGCACAACG GCTCTTTTGC GAC GCGCAAGAGC TTTGGTTTTGACACT RHE_CH03604 3811121 - 3812134 + | hypothetical protein TERM 3569 3812126 - 3812155 + T 73 -8.6 -4.1899 | gap 1 CGGAATTTCAATCGC GGGCGCTG-AGGC CGTCA GTCTGCAGCGCTC TTTTCGATCCCCTCG cyaD 3814476 - 3812140 - | adenylate cyclase protein TERM 3570 3813854 - 3813835 - G 76 -9.2 -4.05788 | opp_overlap 3813851, overlap 3813831 CCCGGTGAAAGCAAA GCCCGCCT TGAC AGGCGGCC GGTAACTGCCCTCGT RHE_CH03606 3814725 - 3816194 + | putative adenylate cyclase protein rpsU 3816351 - 3816563 + | 30S ribosomal protein S21 TERM 3571 3816603 - 3816630 + F 100 -14.9 -4.98531 | gap 1 TTTCAGATGCATTGT GGCGGG-GGCGA TGGGT TCGCCGCCCGCC TTTTTAGTTTGCCGC RHE_CH03608 3816699 - 3817565 + | O-linked GlcNAc transferase protein TERM 3572 3818516 - 3818494 - g 72 -7.6 -4.20367 | CCTGCCAAGAAAGAA CGATCCGGTC GCC GCCCTGATCG TCACACAGGATGCCA RHE_CH03609 3817991 - 3819643 + | putative two-component sensor histidine kinase protein RHE_CH03610 3819702 - 3820184 + | hypothetical protein TERM 3573 3820209 - 3820189 - T 75 -9 -4.04318 | gap 1, overlap 3820182 GCGAGATATGAGAAA GCAGCC-CC GAAG GGCGGCTGC ATCCTCAATGCGCGA pntB 3821608 - 3820214 - | NAD(P)(+) transhydrogenase (AB-specific), beta subunit protein pntA1 3822014 - 3821616 - | NAD(P)(+) transhydrogenase (AB-specific), alpha subunit protein TERM 3574 3821939 - 3821990 + g 77 -14.5 -2.96598 | gap 3 CCGCTTCCGGGGCAT GCGCGGCTGCAG-TGG-CGACGGCCG TCA CGG-CGTCGTTCAACTGCTGCAGCGC TCTGTCCATTGCTTC pntA2 3823279 - 3822014 - | NAD(P)(+) transhydrogenase (AB-specific), alpha subunit protein RHE_CH03614 3823687 - 3823463 - | hypothetical protein TERM 3575 3823561 - 3823545 - G 72 -7.2 -4.15044 | overlap 3823513 3823511 GCGCCGCCGAAGAAA CCGGCG GTCAT CGCCAG CAGGAGAACGACGAG RHE_CH03615 3824567 - 3823911 - | hypothetical protein RHE_CH03616 3827326 - 3824807 - | putative sensory box/GGDEF family protein RHE_CH03617 3827512 - 3828051 + | putative TRAP mannitol/C4-dicarboxylate transporter, permease protein TERM 3576 3828228 - 3828242 + G 78 -7 -4.60487 | overlap 3828224 GAAGCCTTTCTGCAA GCGCTG CCG CTGCGC TTTTTCGGCATCGTC RHE_CH03618 3828102 - 3829565 + | putative TRAP mannitol/C4-dicarboxylate transporter, permease protein TERM 3577 3829609 - 3829575 - T 100 -15.1 -4.32951 | opp_overlap 3829581, overlap 3829576 3829581 AAATAACATGGAAAA GCAAAACCCCCGGAC GGAAA ATCCGGGGGTTTTGT TGCCGGCCCTCATCA TERM 3578 3829608 - 3829576 - T 95 -18.6 -3.18144 | opp_overlap 3829581, overlap 3829575 3829581 AATAACATGGAAAAG CAAAACCCCCGGAC GGAAA ATCCGGGGGTTTTG TTGCCGGCCCTCATC TERM 3579 3829603 - 3829581 - T 100 -12.7 -4.68645 | opp_overlap 3829581, overlap 3829576 3829575 CATGGAAAAGCAAAA CCCCCGGAC GGAAA ATCCGGGGG TTTTGTTGCCGGCCC TERM 3580 3829581 - 3829603 + T 95 -12 -4.63218 | opp_overlap 3829581 3829576 3829575 CATGGAAAAGCAAAA CCCCCGGA CGGAAAA TCCGGGGG TTTTGTTGCCGGCCC RHE_CH03619 3830759 - 3829653 - | TRAP mannitol/C4-dicarboxylate transporter, substrate-binding protein TERM 3581 3830679 - 3830733 + g 100 -19 -3.61398 | overlap 3830680 ATTCTCTTGCGCGAT CGCAGGCGCTGCCAGCGCCGTTGCGG CAA CCGCGCCGGCGCCGGCGGTTCCCGCC TTCTTGAAAAACGAA TERM 3582 3830680 - 3830732 + g 100 -22.5 -2.76696 | overlap 3830679 TTCTCTTGCGCGATC GCAGGCGCTGCCAGCGCCGTTGCGG CAA CCGCGCCGGCGCCGGCGGTTCCCGC CTTCTTGAAAAACGA RHE_CH03620 3830778 - 3831827 + | glutamine amidotransferase protein RHE_CH03621 3832812 - 3831856 - | 2-hydroxyacid dehydrogenase family protein RHE_CH03622 3833884 - 3832841 - | LacI family transcription regulator TERM 3583 3833919 - 3833896 - R 77 -12.4 -3.2827 | gap 1, overlap 3833889 GCACGCAAGCAGCAA GGCCGCA-CGG TAA CCGGCGCGGCC CTTAAAATGTTTAAT RHE_CH03623 3834545 - 3833979 - | MarR family transcriptional regulator RHE_CH03624 3834577 - 3835365 + | creatinine amidohydrolase (creatininase) protein TERM 3584 3836595 - 3836569 - g 72 -3.7 -4.59773 | gap 1 CTCGACCGCGAAAAA CTCG-AGGCATC CTTC AAGGCCTGCGAG GCAGCCGCCTGATGC RHE_CH03625 3835510 - 3836607 + | cobalamin synthesis protein P47K family TERM 3585 3836631 - 3836657 + G 100 -12.3 -4.69664 | overlap 3836632 GTTGCGCCGTTTGAT CTCGACGGCCA CGTTC TGGCCGTCGAA TTTTTAGGTGATATC TERM 3586 3836632 - 3836656 + G 85 -15.8 -3.41075 | overlap 3836631 TTGCGCCGTTTGATC TCGACGGCCA CGTTC TGGCCGTCGA ATTTTTAGGTGATAT TERM 3587 3837488 - 3837477 - g 70 -7.2 -4.04806 | overlap 3837478 GCCGACAGCAAAGAA GCGC TGCT GCGC CGCCCCGGCAAGGGC RHE_CH03626 3836607 - 3837596 + | hypothetical protein cysE2 3837903 - 3838724 + | serine acetyltransferase protein TERM 3588 3838858 - 3838834 - T 71 -4.2 -4.58685 | gap 1, overlap 3838822 3838823 3838835 3838836 3838850 AAAGGCTGGCAAAAA GCCCGCGCCGT AACC ACGGCA-GGTC CGCCTGCCTGCATGG TERM 3589 3838918 - 3838889 - T 82 -15.7 -2.88579 | TGAAGCGCGGATATA CCGGCGGGGAAAG TTCC CTATCCCCACCGG TGGGCGCGCAGCTCA RHE_CH03628 3839521 - 3838931 - | putative acetyltransferase protein RHE_CH03629 3841138 - 3839618 - | ornithine decarboxylase protein TERM 3590 3840389 - 3840364 - G 70 -11.7 -3.21924 | opp_overlap 3840364 3840362 3840355, overlap 3840362 3840366 GCACGCGGCAGAAGA CACGGGCGCCG GGAG CGGCGCGCGAG ATCTTCTCGACTTCC TERM 3591 3840387 - 3840366 - G 73 -12.9 -3.17325 | opp_overlap 3840364 3840362 3840355, overlap 3840364 3840362 ACGCGGCAGAAGACA CGGGCGCCG GGAG CGGCGCGCG AGATCTTCTCGACTT TERM 3592 3841255 - 3841224 - g 100 -4.6 -5.40072 | gap 1, overlap 3841227 CTGCGGCCAAAAAAA TAATTGAACAAAACG GCC CGATTTGTTCAA-CA TTCCAAAACACCTGT TERM 3593 3841253 - 3841227 - g 100 -11 -4.79949 | overlap 3841224 CGGCCAAAAAAATAA TTGAACAAAACG GCC CGATTTGTTCAA CATTCCAAAACACCT RHE_CH03630 3841145 - 3842173 + | LysR family transcriptional regulator RHE_CH03631 3842303 - 3842944 + | hypothetical protein RHE_CH03632 3842938 - 3844014 + | putative nickel ABC transporter, permease protein TERM 3594 3844112 - 3844088 - T 70 -9.9 -3.38272 | CATGATCAGGCAGAA GCCGACGGCGA TCC CCAGCGTCGGC GAGAAATTGCCGATC TERM 3595 3844216 - 3844229 + T 77 -8.1 -4.20136 | GCGAGCGGCTTTCCG GGCTC ACGC GAGCC TTTCCTTTTCCAGAT RHE_CH03633 3844914 - 3844219 - | acetyltransferase protein RHE_CH03634 3845698 - 3844979 - | hypothetical protein TERM 3596 3845201 - 3845243 + g 74 -11.9 -3.42459 | gap 1, opp_overlap 3845214, overlap 3845225 CGGTGACGCAAGCTC GGCCTC-GATGAAAGCGGCG GCCT CGCCGCTGACGTCAGCGGCC TTGATCTTGTCCATG TERM 3597 3845229 - 3845214 - G 78 -11.8 -3.72576 | opp_overlap 3845201 3845225 TCGGCCTCGATGAAA GCGGCG GCCT CGCCGC TGACGTCAGCGGCCT eda 3846449 - 3845811 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase RHE_CH03636 3846548 - 3847093 + | hypothetical protein RHE_CH03637 3847071 - 3847979 + | hypothetical protein RHE_CH03638 3847976 - 3848995 + | rhodanese-related sulfurtransferase protein TERM 3598 3849038 - 3849067 + T 75 -12.9 -3.14931 | gap 1, overlap 3849042 CCGAGAATTTCGCCG TCAAGCC-GCGCCG AGG CGGCGCCGGGTTGA TTGCTCCGCAGTACG RHE_CH03639 3851251 - 3849038 - | putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like) TERM 3599 3849700 - 3849685 - G 74 -11.8 -3.53563 | overlap 3849671 ACAGCTCGGGGGAAA CCGGGC CGTG GCCCGG ACGGTTCCAGCGCAC TERM 3600 3850340 - 3850361 + g 83 -9.4 -4.36931 | GCTCAGCCTGTCGCG CAGCGCCT CCTCGC GGGCGCTG TTTTCCTCTGCCTTC bglSch 3852854 - 3851481 - | beta-glucosidase protein RHE_CH03641 3852878 - 3853351 + | hypothetical protein TERM 3601 3853401 - 3853434 + T 71 -6.7 -4.28049 | GAGCTTTTATCCCGC GCAGAATGGCGTCGT CGAG GCGATCCTGTTCTGC TTCTTATTTCTTTAT TERM 3602 3853561 - 3853513 - T 74 -12.4 -3.14132 | gap 2, opp_overlap 3853522 3853523 3853558, overlap 3853516 CTGCGGCCTGACGAA GGACGGG-CAA-GCCGAGGCAGCC AAT GGCCGCCTCGGCATTGTCGCGGGC TCCGTCCATTTCACG TERM 3603 3853558 - 3853516 - T 87 -17.1 -2.77899 | gap 2, opp_overlap 3853522 3853523, overlap 3853513 CGGCCTGACGAAGGA CGGG-CAA-GCCGAGGCAGCC AAT GGCCGCCTCGGCATTGTCGCG GGCTCCGTCCATTTC TERM 3604 3853522 - 3853550 + T 87 -15.9 -3.29511 | opp_overlap 3853516 3853513, overlap 3853523 GACGAAGGACGGGCA AGCCGAGGCAGCC AAT GGCCGCCTCGGCA TTGTCGCGGGCTCCG TERM 3605 3853523 - 3853549 + T 95 -19.4 -2.57564 | opp_overlap 3853516 3853513, overlap 3853522 ACGAAGGACGGGCAA GCCGAGGCAGCC AAT GGCCGCCTCGGC ATTGTCGCGGGCTCC RHE_CH03642 3854778 - 3853591 - | oxidoreductase protein RHE_CH03643 3856030 - 3854978 - | hypothetical protein TERM 3606 3856262 - 3856237 - R 100 -17.7 -4.85599 | opp_overlap 3856226 3856223 3856235 3856234 3856232 GTGAGGGCATAAAAA TGCGCCCATTC TTGC GAATGGGCGCA CCCTCTTTGATGGGT RHE_CH03644 3857227 - 3856280 - | sugar ABC transporter, substrate-binding protein RHE_CH03645 3858319 - 3857315 - | sugar ABC transporter, permease protein RHE_CH03646 3859979 - 3858453 - | sugar ABC transporter, ATP-binding protein TERM 3607 3860119 - 3860158 + H 75 -13.3 -2.64274 | gap 1, opp_overlap 3860127, overlap 3860127 GCCCGCTTTGACCCT C-ATGTAAACCTTTACAT CGCGC ATGTAAAGGTTTACATCG TGAATTTACACAGAT RHE_CH03647 3860249 - 3861280 + | LacI family transcription regulator TERM 3608 3861342 - 3861307 - T 100 -22.6 -3.88787 | gap 1, opp_overlap 3861309 3861311, overlap 3861309 CGACAGGCCTACAAA GAGCTGCGCCGGCGGCC GCT GGCCGCCGGCGC-GCTT TATCAGACGTAACGG TERM 3609 3861340 - 3861309 - T 100 -25.2 -3.53174 | gap 1, opp_overlap 3861309 3861311, overlap 3861307 ACAGGCCTACAAAGA GCTGCGCCGGCGGCC GCT GGCCGCCGGCGC-GC TTTATCAGACGTAAC TERM 3610 3861309 - 3861340 + T 100 -25.2 -3.86897 | gap 1, opp_overlap 3861309 3861307, overlap 3861311 ACAGGCCTACAAAGA GCTGCGCCGGCGGCC GCT GGCCGCCGGCGC-GC TTTATCAGACGTAAC TERM 3611 3861311 - 3861339 + T 100 -25.3 -2.91924 | opp_overlap 3861309 3861307, overlap 3861309 AGGCCTACAAAGAGC TGCGCCGGCGGCC GCT GGCCGCCGGCGCG CTTTATCAGACGTAA xylA 3862655 - 3861345 - | xylose isomerase TERM 3612 3861624 - 3861661 + g 88 -17.1 -3.01712 | gap 1, overlap 3861636 TGCCGGATCGAGCGA CTGGCGGCG-CAGCTTCG AGT CGAAGTTGGTGCCGCCGG TCTTGAAGCCGCCGC TERM 3613 3862752 - 3862785 + r 78 -12.5 -3.32844 | gap 1, opp_overlap 3862759 3862761, overlap 3862759 ACCTTCTCCCCCGAG GGGAGAAGAGAC-GCG TTG CGCCGCCTCTTTTCCC TTCTCCCCTCGGGGA xylBch 3864300 - 3862846 - | xylulokinase protein RHE_CH03650 3865343 - 3864321 - | LacI family transcription regulator TERM 3614 3865068 - 3865099 + g 91 -16.6 -3.60971 | GCGAATATCGGTGCG TTCGGCAGGCGAGC GGAG GATCGCCTGCCGGA TTTCGGCATTGAGCT TERM 3615 3865530 - 3865501 - R 100 -17.3 -3.68359 | opp_overlap 3865507, overlap 3865507 GCTGGAAAACCACAA CAAAAAGGCCCTC CGGA GAGGGCCTTTTCG AGGGACGGGGCCGGA TERM 3616 3865507 - 3865524 + r 91 -12.7 -4.07568 | opp_overlap 3865501 3865507 AAACCACAACAAAAA GGCCCTC CGGA GAGGGCC TTTTCGAGGGACGGG TERM 3617 3865524 - 3865507 - R 100 -12.7 -5.25772 | opp_overlap 3865507, overlap 3865501 AAACCACAACAAAAA GGCCCTC CGGA GAGGGCC TTTTCGAGGGACGGG TERM 3618 3865567 - 3865589 + r 93 -12.6 -4.2704 | TGGCCGCCGCCACCT CCTCCGCCGC CTT GCGGCGCGGG TTTCTTGATCATGGC RHE_CH03651 3867149 - 3865548 - | multidrug ABC transporter permease TERM 3619 3865935 - 3865953 + g 76 -11 -3.71848 | GATGCGCGACGGCGG CATCGTGC CAA GCGCGATG TTGTTGATCGGCACC RHE_CH03652 3868392 - 3867175 - | multidrug resistance efflux protein TERM 3620 3868814 - 3868779 - g 81 -13.2 -3.68351 | opp_overlap 3868764 3868763 CGGCGATGATCGAAA CCGAGCGCGCCGCT TTCATGGC AGCGGTGCGCACGG CGCTTGCCGAGCATG TERM 3621 3869022 - 3869065 + G 73 -8.1 -3.9777 | gap 1, opp_overlap 3869014, overlap 3869023 3869052 3869053 AACAGCATGTCGCCG AAGGCCGGC-TCGAGATCGA CGACA TCGATCTTGCCGCCGGCCAG TTTCTCGATCTTGCC TERM 3622 3869052 - 3869088 + G 79 -9.3 -4.16842 | overlap 3869023 3869022 3869053 TCGACGACATCGATC TTGCCGCCGGCCAGTTT CTC GATCTTGCCAGCGGCAG TTTCTTCAAGCTCCG RHE_CH03653 3868538 - 3869218 + | TetR family transcriptional regulator TERM 3623 3869275 - 3869287 + F 71 -4.7 -4.52589 | opp_overlap 3869268 3869275, overlap 3869276 GCAAGAACGATCAAA CCCGG CTG CCGGC TTTTCTCTAAGAAGA TERM 3624 3869315 - 3869275 - f 89 -12.8 -3.89131 | opp_overlap 3869275 3869276, overlap 3869268 GCAAGAACGATCAAA CCCGGCTGCCGGCTT-TTCT CTA AGAAGAAGCC-GCAACCAGG GGAATGAAGATGAAC TERM 3625 3869546 - 3869575 + G 75 -12.1 -3.5594 | CATCCTCGAGGTTGC GCTTTGCGCGGGC TACG GCTCGCACGAAGC TTTCACCCGTGCCTT RHE_CH03654 3869325 - 3870161 + | AraC family transcriptional regulator TERM 3626 3870303 - 3870329 + F 83 -15.2 -3.17194 | overlap 3870319 TCGTATACCGGCTTG TGGCGCTTGTCT GGC AGGCAGGCGCCA TTACATTGCGCGCGT RHE_CH03655 3870392 - 3871129 + | TerC family transporter protein TERM 3627 3871169 - 3871196 + F 100 -11.2 -5.06414 | overlap 3871171 ATTGGCGCACCCTCT CAGCGCCGGCAA GCCG TTGCCGACGCGG TTTTTCTTGACGCGC TERM 3628 3871171 - 3871194 + F 71 -12.4 -2.77538 | overlap 3871169 TGGCGCACCCTCTCA GCGCCGGCAA GCCG TTGCCGACGC GGTTTTTCTTGACGC TERM 3629 3871263 - 3871274 + F 79 -7.2 -4.58685 | ATCGGCGGATGGTGC GGGC GAAT GCCC TTTTTCGGCCGGTTT gltX 3871372 - 3872838 + | glutamyl-tRNA synthetase lysS 3872861 - 3874357 + | lysyl-tRNA synthetase protein TERM 3630 3874397 - 3874374 - T 77 -10.2 -3.76759 | opp_overlap 3874374 AGGAAGTTGACCAAA GCGGAATGCC GGCC GGCGCTCCGC TTTTTCATATGTCTG TERM 3631 3874374 - 3874397 + T 100 -10.2 -4.86133 | opp_overlap 3874374 AGGAAGTTGACCAAA GCGGAATGCC GGCC GGCGCTCCGC TTTTTCATATGTCTG RHE_CH03658 3875169 - 3874414 - | hypothetical protein TERM 3632 3875310 - 3875283 - H 73 -5.6 -4.59773 | overlap 3875285 CCCCATTTTGAAAAA GTCCAAAAAAGG TCCA CCTTTTTCAGCC GCTTGCCACGGCGCA RHE_CH03659 3875348 - 3876256 + | LysR family transcriptional regulator TERM 3633 3876252 - 3876278 + F 79 -10.2 -3.97947 | overlap 3876252 GCTCCGGCCGTATGC GCTGATATCGGA ATT TCCGATATCGCC TTTCTGATAAATGAA TERM 3634 3876252 - 3876277 + F 70 -11.3 -2.98447 | gap 1, overlap 3876252 GCTCCGGCCGTATGC GCTGATATCGGA ATT TCCGATATC-GC CTTTCTGATAAATGA TERM 3635 3877145 - 3877126 - g 73 -11.4 -3.66018 | CGACGACTTCAAGAA CGAAGGCG TCGT CGCCTCCG GCTCCTGGCCCTTCC RHE_CH03660 3876377 - 3877537 + | putative spermidine/putrescine ABC transporter, substrate-binding protein TERM 3636 3877606 - 3877561 - f 74 -10.3 -3.59979 | overlap 3877562 GCCCTGGAGGGTAAA TCCCCTCCCCAACCCCTCCCC ACAA GGGGAGGGGCTTAAGAGGCAG CGCCTAATCCGGCTG TERM 3637 3877605 - 3877562 - f 76 -13.8 -2.75844 | overlap 3877561 CCCTGGAGGGTAAAT CCCCTCCCCAACCCCTCCCC ACAA GGGGAGGGGCTTAAGAGGCA GCGCCTAATCCGGCT TERM 3638 3877663 - 3877685 + F 95 -17 -3.53563 | GCGCGGCAGGTTAAG CCCCTCCCCG TTG TGGGGAGGGG TTTGGGGCGGGGTCT RHE_CH03661 3877753 - 3878739 + | spermidine/putrescine ABC transporter ATP-binding protein RHE_CH03662 3878639 - 3879724 + | spermidine/putrescine ABC transporter permease RHE_CH03663 3879688 - 3880500 + | spermidine/putrescine ABC transporter permease RHE_CH03664 3880514 - 3881941 + | gamma-aminobutyraldehyde dehydrogenase TERM 3639 3882260 - 3882289 + T 75 -10 -3.85698 | opp_overlap 3882252 3882262 3882263, overlap 3882262 3882263 CGCACAAGCCGGAGC AATTCCGCGGCT CGGGAA AGCCGCGGAGTG TTTATGGCGCGCAAA TERM 3640 3882262 - 3882287 + T 79 -12.6 -3.51934 | opp_overlap 3882252 3882262 3882263, overlap 3882260 3882263 CACAAGCCGGAGCAA TTCCGCGGCT CGGGAA AGCCGCGGAG TGTTTATGGCGCGCA TERM 3641 3882287 - 3882262 - T 71 -11.1 -3.17219 | opp_overlap 3882262 3882260 3882263, overlap 3882252 3882263 CACAAGCCGGAGCAA TTCCGCGGCTC GGGA AAGCCGCGGAG TGTTTATGGCGCGCA TERM 3642 3882263 - 3882286 + T 75 -13.9 -2.70946 | opp_overlap 3882252 3882262 3882263, overlap 3882262 3882260 ACAAGCCGGAGCAAT TCCGCGGCT CGGGAA AGCCGCGGA GTGTTTATGGCGCGC TERM 3643 3882286 - 3882263 - T 78 -14.6 -2.5001 | opp_overlap 3882263 3882262 3882260, overlap 3882252 3882262 ACAAGCCGGAGCAAT TCCGCGGCTC GGGA AAGCCGCGGA GTGTTTATGGCGCGC RHE_CH03665 3882764 - 3882321 - | hypothetical protein RHE_CH03666 3883267 - 3882875 - | hypothetical protein TERM 3644 3883274 - 3883301 + r 78 -12.6 -3.29013 | opp_overlap 3883274, overlap 3883269 CGCAAGCATGAAAAA GACGCGGTTGCC AGCC GGCATCCGCGCC TTCGATTGTTGGCGT TERM 3645 3883301 - 3883274 - R 100 -14.8 -4.81083 | opp_overlap 3883274 3883269 CGCAAGCATGAAAAA GACGCGGTTGCC AGCC GGCATCCGCGCC TTCGATTGTTGGCGT tal 3884288 - 3883323 - | transaldolase B RHE_CH03668 3884712 - 3885695 + | LacI family transcription regulator RHE_CH03669 3886639 - 3885767 - | 6-O-methylguanine-DNA methyltransferase protein RHE_CH03670 3887216 - 3886719 - | hypothetical protein TERM 3646 3886959 - 3886932 - GH 72 -9.8 -3.55444 | TCCTGATGGGGCAAA CTTGCGCACCGA TACG TCCGTGCGCGAG ACGGTGACCTGTTCG TERM 3647 3887339 - 3887358 + Gr 72 -7.2 -4.18018 | gap 1 ATTCGCCGGCCGAGC GCGA-GGAA ATC TTCCGTCGC TTTTCGGTGCAGCGG nth 3887197 - 3888012 + | endonuclease III protein RHE_CH03672 3888555 - 3887977 - | TetR family transcriptional regulator TERM 3648 3888610 - 3888576 - H 86 -11.7 -4.1399 | opp_overlap 3888574 3888572, overlap 3888600 CCATTTACATACAAA CAGACTGTATGTT AAGGATAAA AACATACAGTCTG AATGTATCTAAGGAG TERM 3649 3888614 - 3888600 - H 74 -2.8 -4.98255 | opp_overlap 3888574 3888572, overlap 3888576 TGTTAAGGATAAAAA CATACA GTC TGAATG TATCTAAGGAGGAAA TERM 3650 3888641 - 3888631 - H 70 -5.4 -4.35742 | ATCTAAGGAGGAAAA CGAT GAA ATCG ACGAGCTATTATCCT RHE_CH03673 3888633 - 3889070 + | putative glyoxalase/bleomycin resistance-like protein RHE_CH03674 3889774 - 3889061 - | CysZ-like protein TERM 3651 3889649 - 3889637 - G 71 -6.2 -4.35044 | overlap 3889646 3889647 CCAGGGAAAGAGAAA GGCC ATGAA GGCC CCGCGTAACGCGAAC RHE_CH03675 3890006 - 3890860 + | putative transcriptional regulator protein RHE_CH03676 3892456 - 3890876 - | L-ribulokinase protein RHE_CH03677 3893145 - 3892456 - | hydrolase phosphatase protein TERM 3652 3892639 - 3892600 - G 90 -15.1 -3.75153 | opp_overlap 3892609 GCCGGTGAAGGCAAA GACCGACAT-GCCGGCCGC CTTG GCGG-CGGCAATGCCGGCC GGACTGTCCTCGACG mtlK 3894725 - 3893244 - | mannitol 2-dehydrogenase protein TERM 3653 3894422 - 3894442 + g 85 -6 -4.9645 | opp_overlap 3894419, overlap 3894423 GAATGTCAATCATCG GGGCGGTG ACTCG CGCCGCCG TTTTGTTGTTGTCCT smoK 3895806 - 3894808 - | sorbitol/mannitol ABC transporter, ATP-binding protein smoG 3896653 - 3895823 - | sorbitol/mannitol ABC transporter, permease protein smoF 3897491 - 3896655 - | sorbitol/mannitol ABC transporter, permease protein TERM 3654 3897622 - 3897588 - R 79 -10.1 -4.14392 | opp_overlap 3897616 3897617, overlap 3897590 CTTTAATCTGGAAAA GAGGCCGCCGA-TGC GGTTCGG GCAATCGGCGGCC-C AGAGGGGCGGATTGT TERM 3655 3897621 - 3897590 - R 84 -13.8 -3.67 | gap 1, opp_overlap 3897616 3897617, overlap 3897588 TTAATCTGGAAAAGA GGCCGCCGA-TGC GGTTCGG GCAATCGGCGGCC CAGAGGGGCGGATTG TERM 3656 3897648 - 3897662 + r 82 -6.4 -4.97158 | overlap 3897626 ATTGTCAAGGATCCG CCTCTT CTC AGGAGG TTTTATTTAATGTAG smoEch 3898975 - 3897665 - | sorbitol/mannitol ABC transporter, substrate-binding protein TERM 3657 3899066 - 3899049 - R 100 -4.9 -5.66684 | gap 1, overlap 3899050 3899051 CAACCCACAAAAAAA GTCAACGA CAA TCGTTG-C TGCGATGCCGAAGGC smoC 3900073 - 3899120 - | sorbitol/mannitol operon transcriptional regulator protein RHE_CH03684 3900929 - 3900186 - | putative exopolysaccharide biosynthesis protein TERM 3658 3900616 - 3900602 - G 82 -5.6 -4.84359 | overlap 3900584 3900603 3900605 3900606 GCACCGCCAGAAAAA CCAGCG GCG CGCCGA GCACGGCCGAGGTGC TERM 3659 3901810 - 3901826 + G 73 -11.5 -3.63627 | opp_overlap 3901792 3901794 CGGCGCCACCATCGT GCCCGTC GGC GGCGGGC TTTCCAATGTCGCGC RHE_CH03685 3901004 - 3901990 + | ROK family transcriptional regulator TERM 3660 3902047 - 3902093 + T 71 -12.3 -2.82516 | gap 1 TTTCGTCAGGGTAGA GGCGATTGGCGATGGGCATACC TCCA GGTACGTCCGA-GCCGATCGCC TCTGATCCTGGCGGA hexA 3904273 - 3902342 - | beta-N-acetylhexosaminidase protein TERM 3661 3902925 - 3902884 - G 81 -13.7 -3.54459 | gap 1, overlap 3902896 TCAATGCCTTGCAAA GCGGCGACGAAA-GCCAGGC GCC GCTTGCCACCTCGTCGCCGC CGATATGAATATATT TERM 3662 3904430 - 3904409 - R 100 -18.7 -4.41494 | GACCTGCAAGGAAAA CGGCGCGGC TTTC GCCGCGCCG TCCTCACTCGGCTGC TERM 3663 3904453 - 3904473 + r 75 -12.6 -3.1552 | overlap 3904438 3904451 TCGGCTGCCAACGCC GGCGGATG TCTGT CATCCGCC TCTTCCTGGATGGCG RHE_CH03687 3907580 - 3904434 - | putative multidrug efflux transporter protein TERM 3664 3906186 - 3906165 - G 72 -4.4 -4.57353 | overlap 3906180 GCCGACGACATAAAA CAGCGAAC GCACAT ATTCGCCG GCCGTCGAGGCGGCA RHE_CH03688 3908745 - 3907606 - | putative multidrug efflux transporter protein TERM 3665 3908779 - 3908794 + r 71 -6.8 -4.20367 | gap 1, overlap 3908779 3908776 GTTTTTGGGGATCGA CGG-CGG CTG CCGTCCG TTATTTCTTCAGCGC RHE_CH03689 3909403 - 3908795 - | TetR family transcriptional regulator osmC 3910062 - 3909631 - | osmotically inducible protein RHE_CH03691 3910987 - 3910208 - | short chain dehydrogenase TERM 3666 3910337 - 3910363 + g 70 -10 -3.54424 | overlap 3910313 3910323 CGTTGCGATCCGCCC GCCGGGATGCAG CTT CATCGTCCCGGC TTTGGCGGCCTCCGG RHE_CH03692 3911877 - 3910987 - | putative aldose-1-epimerase protein araH 3912824 - 3911874 - | L-arabinose transporter permease protein araG 3914347 - 3912842 - | L-arabinose transporter ATP-binding protein TERM 3667 3913762 - 3913744 - G 83 -7.4 -4.64766 | CGCAGAGTCGAAAAA TCTCATCG AGA CGATGCGA GACATAAAGGATGAC RHE_CH03695 3915399 - 3914416 - | putative sugar ABC transporter, substrate-binding protein RHE_CH03696 3915601 - 3916362 + | GntR family transcriptional regulator dgoA 3916429 - 3917577 + | galactonate dehydratase protein TERM 3668 3917587 - 3917604 + F 100 -10.5 -4.86621 | TGGTGAGAGCATGGA GGGTCGC GCAA GCGGCCC TTTTTCATTCGCAGT RHE_CH03698 3917674 - 3918069 + | hypothetical protein fabG 3918146 - 3918925 + | 3-ketoacyl-(acyl-carrier-protein) reductase cyaG1 3920163 - 3918946 - | adenylate cyclase protein RHE_CH03701 3921323 - 3920229 - | putative transcriptional regulator protein TERM 3669 3922062 - 3922101 + G 76 -8.4 -4.17048 | ACAGCCAGACCTATG TGCCGGGTTATCTGGCGC TGAA GCGCCAGGAGTTCCGGGA TTATTTTGAGGCCAA RHE_CH03702 3921344 - 3922528 + | hypothetical protein TERM 3670 3923469 - 3923491 + G 75 -12 -3.66999 | overlap 3923463 3923471 TCGGCGGAATCGGGC CTGATGACCG GCT CGGTCATCTG TTTCGATCAATCGAT TERM 3671 3923471 - 3923489 + G 76 -13.2 -3.41569 | overlap 3923463 3923469 GGCGGAATCGGGCCT GATGACCG GCT CGGTCATC TGTTTCGATCAATCG RHE_CH03703 3922731 - 3923552 + | short chain dehydrogenase RHE_CH03704 3923647 - 3924558 + | putative gluconolactonase protein TERM 3672 3924736 - 3924691 - f 84 -5.4 -5.14965 | opp_overlap 3924716 3924719, overlap 3924697 3924716 ACCCGCACGAAAAAA GCTAAAGCCCATCGCATGAA TCAGAT TTGATGCGACGCGCTGGAGC GCTCGCACCTCATTG TERM 3673 3926979 - 3926958 - g 70 -11.6 -3.14132 | opp_overlap 3926954 3926952 CGTCGGTCCGACCAA TGTGCCGC TGCAGG GCGGCACA TCAGGCTTCTGGCTG lacZ2 3924838 - 3927084 + | beta-D-galactosidase protein RHE_CH03706 3928271 - 3927156 - | sugar ABC transporter, ATP-binding protein RHE_CH03707 3929246 - 3928275 - | sugar ABC transporter, permease protein TERM 3674 3928611 - 3928578 - G 73 -10.9 -3.65201 | gap 1 GAAGATCTGGAAGAA GCTGGCGC-CGTCGAC CTG GGCGGCGCGCACCAGC TCGGTCGGAAAGGCC RHE_CH03708 3930196 - 3929243 - | putative sugar ABC transporter, permease protein RHE_CH03709 3931568 - 3930309 - | sugar ABC transporter, substrate-binding protein RHE_CH03710 3931874 - 3932926 + | LacI family transcriptional regulator exsB 3933042 - 3933752 + | succinoglycan biosynthesis transcriptional regulator protein exsC 3933749 - 3934108 + | 6-pyruvoyl tetrahydropterin synthase protein exsD 3934105 - 3934833 + | organic-radical-activating protein cyaG2 3936062 - 3934839 - | adenylate cyclase protein nrdF 3937136 - 3936162 - | ribonucleotide-diphosphate reductase subunit beta TERM 3675 3937188 - 3937213 + r 76 -13.3 -2.80816 | GGAGCCCCCTCACCC TGCCCTCTCCC CGAG GGGAGAGGGGA TGTCGTGCCTGCCGC nrdE 3939393 - 3937312 - | ribonucleotide-diphosphate reductase subunit alpha nrdI 3939899 - 3939495 - | ribonucleotide reductase stimulatory protein nrdH 3940137 - 3939916 - | glutaredoxin protein TERM 3676 3940746 - 3940772 + r 86 -5.1 -5.27335 | gap 1 GGCTGTGGAGAAGGT TCGGATGGCCTG TAGC CGGGCC-TCAGA TTTTTGTTTCCCGGC RHE_CH03719 3943057 - 3940811 - | heavy metal-transporting ATPase protein TERM 3677 3943124 - 3943085 - H 77 -13.8 -2.99057 | gap 1, overlap 3943082 3943077 TGTCAAACAGAAGCA TCCCTCCTACATCCTCTAG CGA CTAGAGG-TGCAAGAGGAA AATCATGAAAAAGAT RHE_CH03720 3943129 - 3943551 + | MerR family transcriptional regulator RHE_CH03721 3943619 - 3944827 + | putative dehydrogenase protein TERM 3678 3944938 - 3944968 + F 75 -8.9 -4.18494 | gap 1, opp_overlap 3944937 3944938 AGGGTGCAGAGGAAG GCGGCCGAGCGTGC AATT GCAAAC-CGGCCGC TTTTCCATCAGACTG RHE_CH03722 3945009 - 3945968 + | transcriptional regulator protein TERM 3679 3946260 - 3946236 - g 93 -13.5 -4.12902 | CAAGTATTTCGAAAA CCTGACGCCGG TCA CCGGCGGCAAG CTCTGCGACATTCCC RHE_CH03723 3946135 - 3947643 + | putative aldehyde dehydrogenase protein RHE_CH03724 3947867 - 3948259 + | hypothetical protein TERM 3680 3948830 - 3948860 + G 73 -11.3 -3.55548 | overlap 3948852 TCGGCCTATCCGGCC TGCCGGCCGG-AAGT CGA ACTTGCCGG-CGGCA TTTACGCCGATATTG RHE_CH03725 3948407 - 3949003 + | hypothetical protein TERM 3681 3949104 - 3949126 + G 73 -3.3 -4.72007 | overlap 3949105 CGAATCGATGGAATG GTCACCAGC GTCAG GCTGGAGAA TTTCTTTTGGTCGAA RHE_CH03726 3949029 - 3949379 + | hypothetical protein RHE_CH03727 3949543 - 3950250 + | putative 3-oxoacyl-[acyl-carrier protein] reductase protein TERM 3682 3950671 - 3950700 + G 100 -19.5 -3.56092 | opp_overlap 3950691 3950695 CCCTCATTCTGACGC TCGCCATCACTTC GATT GAAGTGATGGCGA TTTCCGCCGTGATGA RHE_CH03728 3950409 - 3951539 + | putative Ca2+/H+ antiporter protein RHE_CH03729 3951956 - 3952456 + | NADH-ubiquinone oxidoreductase chain J protein nuoK2 3952456 - 3952758 + | NADH-ubiquinone oxidoreductase chain K protein TERM 3683 3953352 - 3953405 + G 100 -10.2 -4.70921 | overlap 3953353 GGTCGCTCGACTTTG TGACGGGCGGGCTGCTG-GCGGGGGC TGAT GCCTCCGCGCAGCTGCT-GACGGTCG TTTATTTCTGTTATC TERM 3684 3953353 - 3953404 + G 71 -11.5 -3.40926 | overlap 3953352 GTCGCTCGACTTTGT GACGGGCGGGCTGCTG-GCGGGGGC TGAT GCCTCCGCGCAGCTGCT-GACGGTC GTTTATTTCTGTTAT RHE_CH03731 3952772 - 3954226 + | putative monovalent cation/H+ antiporter subunit D RHE_CH03732 3954483 - 3954190 - | hypothetical protein nuoM2 3954470 - 3956230 + | putative monovalent cation/H+ antiporter subunit D nuoM3 3956239 - 3957714 + | NADH-ubiquinone oxidoreductase chain M protein TERM 3685 3957930 - 3957944 + G 82 -11.4 -4.02051 | GGCATGTTCGTCGCC GACCGC TTC GCGGTC TTCTTTAAATTCGTG TERM 3686 3958805 - 3958836 + G 70 -11.6 -3.13191 | overlap 3958803 3958802 3958799 CGCGGGTTTGGCCAA GCAGCATCCAGGGC TAGC GCTTTTGATGCTGC TCTATCTGTTCTCGC nuoN2 3957711 - 3959150 + | NADH-ubiquinone oxidoreductase chain N protein TERM 3687 3959360 - 3959375 + G 77 -2.4 -5.00895 | overlap 3959351 GCCGGAGTTGTTCTG GTGGCG GGAG CGACGC TTTTTGTCTCCTCGC TERM 3688 3959446 - 3959425 - g 76 -8.7 -4.18506 | overlap 3959438 CTATCCCGAAAAGAA CATGCCGTA TGAA TGCGGCATG GACGCCGCGGGTGAG nuoA2 3959306 - 3959671 + | NADH-ubiquinone oxidoreductase chain A protein TERM 3689 3959686 - 3959676 - g 73 -8.2 -4.0274 | opp_overlap 3959676, overlap 3959677 GGGAGCAGTAAACAA CGCG ATC CGCG ATAGCGTGCTGTTCA TERM 3690 3960145 - 3960105 - g 83 -7.6 -4.63218 | gap 1 CCTGCTTCAAGAAAA GATCAAGAGGT-CCCGGGC GCTC GCCGGAACACCTCTGGATC GGGTTATAGCGCCAT nuoB3 3959659 - 3960162 + | NADH-ubiquinone oxidoreductase chain B protein nuoC2 3960159 - 3960722 + | NADH-ubiquinone oxidoreductase chain C protein nuoD2 3960724 - 3961938 + | NADH-ubiquinone oxidoreductase chain D protein nuoE2 3961963 - 3962481 + | NADH-ubiquinone oxidoreductase chain E protein TERM 3691 3963191 - 3963177 - g 71 -5.6 -4.36914 | opp_overlap 3963159 TCGGCCCGGAGAAAA GCCCCG GCC CGAAGC TCTACTGCGTCAGCG nuoF2 3962474 - 3963736 + | NADH-ubiquinone oxidoreductase chain F protein TERM 3692 3965269 - 3965297 + G 74 -13.2 -3.31792 | CGACGCGCCCGTGAC GCTGCAGCAGAT CAACA ACCTGCTGCAGC TTCTCCGCCTGCTCG nuoG2 3963767 - 3966346 + | NADH-ubiquinone oxidoreductase chain G protein RHE_CH03743 3966859 - 3966419 - | hypothetical protein RHE_CH03744 3967471 - 3966905 - | NADH-ubiquinone oxidoreductase protein nuoH2 3968504 - 3967482 - | NADH-ubiquinone oxidoreductase chain H protein TERM 3693 3967780 - 3967770 - G 71 -8.2 -3.8646 | opp_overlap 3967768 3967766 3967770, overlap 3967771 CATGAAGAATGCAAA GCGG ATA CCGC TGTATTCGGTATGGA TERM 3694 3968786 - 3968802 + H 100 -11.5 -4.83759 | opp_overlap 3968786 TTTGGAATCAAAAAA GCCCGCG AGC TGCGGGC TTTTTGCATTTGGTT TERM 3695 3968802 - 3968786 - H 100 -10.8 -5.26875 | opp_overlap 3968786 TTTGGAATCAAAAAA GCCCGC GAGCT GCGGGC TTTTTGCATTTGGTT TERM 3696 3968910 - 3968927 + H 82 -8.3 -4.67608 | opp_overlap 3968910 ATTTTACAGCAGAAA GGGCCGC TGTC GCGACCC TTTTGTGTTGGCCTG TERM 3697 3968927 - 3968910 - H 79 -10.5 -4.01888 | opp_overlap 3968910 ATTTTACAGCAGAAA GGGCCGC TGTC GCGACCC TTTTGTGTTGGCCTG TERM 3698 3970376 - 3970389 + H 74 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTGATAAACAGT TERM 3699 3970764 - 3970780 + H 73 -8 -4.08546 | overlap 3970759 3970758 TTGGTCTTTCGGCGA GAGGGT CTCTC ACCCTC TTTATCGTTACTCAT TERM 3700 3971955 - 3971998 + H 70 -10.5 -3.36273 | CTGGCGAATAGTTGG TAGCGAGTAGCGAACAG TTTTTAAATT CTATTCGCTATTCGCTA TTCCTATTCGCGGCG TERM 3701 3972749 - 3972730 - H 77 -7.8 -4.45168 | overlap 3972724 TCTTCAAAAGACAAA TTCGTCGC TCAC GCGCCGAA GGCGCTCCGCGGGGG TERM 3702 3974227 - 3974247 + H 72 -9.7 -3.55761 | opp_overlap 3974226 3974223 CAGTATCAAAGGCAG TTCCAGGGT TGA GCCCTGGGA TTTCACCCCTGACTG RHE_CH03752 3975545 - 3977467 + | M24/M37 family peptidase TERM 3703 3977502 - 3977485 - T 100 -12.7 -5.06414 | opp_overlap 3977485 CGTCGTCAACAAAAA TGGCGGC CGAA GCCGCCA TTTCTCATTTATCGC TERM 3704 3977485 - 3977502 + T 91 -12.7 -4.17701 | opp_overlap 3977485 CGTCGTCAACAAAAA TGGCGGC CGAA GCCGCCA TTTCTCATTTATCGC clpB 3980128 - 3977528 - | ATP-dependent Clp protease, ATP-binding subunit protein TERM 3705 3980214 - 3980198 - R 71 -7.9 -4.08767 | overlap 3980202 TCGACCCCCTGAAAA GGCAGGC CGC GCCTGGC CCGTCTGAGATTTGG TERM 3706 3980321 - 3980288 - R 91 -17.6 -3.25481 | opp_overlap 3980294, overlap 3980289 3980294 AAAGAGCCTATAAGA CGAAAATCCCCGGC AGGAGG GCCGGGGATTTTCA AGGAAATTCGAACAG TERM 3707 3980320 - 3980289 - R 91 -18.9 -2.54566 | opp_overlap 3980294, overlap 3980288 3980294 AAGAGCCTATAAGAC GAAAATCCCCGGC AGGAGG GCCGGGGATTTTC AAGGAAATTCGAACA TERM 3708 3980294 - 3980315 + r 91 -13 -4.08692 | opp_overlap 3980289 3980288 3980294 CCTATAAGACGAAAA TCCCCGGC AGGAGG GCCGGGGA TTTTCAAGGAAATTC TERM 3709 3980315 - 3980294 - R 95 -13 -4.46656 | opp_overlap 3980294, overlap 3980289 3980288 CCTATAAGACGAAAA TCCCCGGC AGGAGG GCCGGGGA TTTTCAAGGAAATTC RHE_CH03754 3981108 - 3980380 - | hypothetical protein TERM 3710 3980618 - 3980653 + g 78 -11.7 -3.71873 | ATTTCGGGCTGGGGT GCCGGGGCAGGCGCC GCAACG GGTGCCGGCGCTGGC TTTGGCTGTGCCTGC hemK 3982312 - 3981452 - | protoporphyrinogen oxidase (methyltransferase) protein prfA 3983364 - 3982309 - | peptide chain release factor 1 TERM 3711 3983024 - 3983010 - G 73 -3.4 -4.72986 | opp_overlap 3983018, overlap 3983011 GATCGCCAGCAAAAA GGGCAG CTT CCGACC CGCCGGTACCGGCAC ptsP 3985684 - 3983417 - | enzyme I of the phosphotransferase system TERM 3712 3984410 - 3984425 + g 80 -6 -4.71426 | CTGCTCCTGCCGCCT GGCCCG GAAG CGGACC TTTTCTTCGTAGGAA lysC 3987048 - 3985774 - | aspartate kinase TERM 3713 3987710 - 3987730 + G 71 -9 -3.73816 | gap 1, opp_overlap 3987710, overlap 3987710 CGTCACCGCCGAAGA G-CTCGCCG AAGC CGGCGAGAC TTTCGATATCGTCTT ubiG 3987345 - 3988091 + | 3-demethylubiquinone-9 3-methyltransferase RHE_CH03760 3988577 - 3988149 - | hypothetical protein RHE_CH03761 3989431 - 3988574 - | putative amidohydrolase protein grxC 3989759 - 3989442 - | glutaredoxin protein TERM 3714 3989604 - 3989625 + gr 74 -5.1 -4.63218 | gap 1, overlap 3989606 GGAATAGGTCGCGTC GTGC-TCGAC GTA GTCGACGCCC TTTTCTTCAAGAAGG comF 3990507 - 3989731 - | competence protein F (phosphoribosyltransferase protein) TERM 3715 3990444 - 3990431 - GH 86 -8.1 -4.60797 | GGCGGATAGAGAAAA TCGGC AAGC GCCGA AAACGGCCGCAGGAG TERM 3716 3990468 - 3990448 - GH 76 -8.2 -4.11484 | overlap 3990461 GGCAAGCGCCGAAAA CGGCCGCA GGAGA TGCGCCCG GAGCAAATCTGCCGG TERM 3717 3991282 - 3991309 + G 71 -12.6 -3.05844 | opp_overlap 3991235 GCGCGCCTTCTTCCT GCGCGCGGCGGA GATC TACGCCGAGCGC TATTCCGATCCCGAC RHE_CH03764 3990584 - 3991468 + | SAM-dependent methyltransferase protein RHE_CH03765 3992051 - 3991734 - | hypothetical protein mutT 3992687 - 3992274 - | NTP pyrophosphohydrolase protein RHE_CH03767 3993490 - 3992684 - | putative acetyltransferase protein argJ 3994712 - 3993471 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 3718 3994814 - 3994794 - R 83 -15.4 -3.17382 | opp_overlap 3994787 3994786 AACAACGATAGCGAA GGGCCCGG AAGAA CCGGGCCC TGATGCGAATATTAC ppiD2 3995707 - 3994826 - | peptidyl prolyl cis-trans isomerase D signal peptide protein secA 3995954 - 3998668 + | preprotein translocase subunit SecA TERM 3719 3998692 - 3998710 + F 100 -14.6 -5.18371 | opp_overlap 3998692 GCGAGAAGCTAGAAA TGCCGCCT TCA AGGCGGCA TTTTCTTTTCTGCGG TERM 3720 3998710 - 3998692 - f 95 -14.6 -4.00066 | opp_overlap 3998692 GCGAGAAGCTAGAAA TGCCGCCT TCA AGGCGGCA TTTTCTTTTCTGCGG RHE_CH03771 3998909 - 4000261 + | putative polysaccharide biosynthesis associated protein RHE_CH03772 4000262 - 4001539 + | hypothetical protein RHE_CH03773 4003166 - 4001514 - | acetyl-CoA synthetase protein RHE_CH03774 4003363 - 4004343 + | oxidoreductase (aldo/keto reductase) protein RHE_CH03775 4004989 - 4004411 - | TetR family transcriptional regulator RHE_CH03776 4005116 - 4006411 + | molybdenum ABC transporter permease TERM 3721 4006423 - 4006445 + T 90 -14.8 -3.58269 | opp_overlap 4006387 4006423 4006439, overlap 4006424 4006440 TTGAGATCGACAGGA CCCGGCCTCG TAA CGAGGCCGGA TTTCCCGCTGCATTG TERM 3722 4006445 - 4006423 - T 86 -17 -2.65815 | opp_overlap 4006423 4006424 4006440, overlap 4006387 4006439 TTGAGATCGACAGGA CCCGGCCTCG TAA CGAGGCCGGA TTTCCCGCTGCATTG TERM 3723 4006424 - 4006444 + T 88 -18.3 -2.7464 | opp_overlap 4006387 4006423 4006439, overlap 4006423 4006440 TGAGATCGACAGGAC CCGGCCTCG TAA CGAGGCCGG ATTTCCCGCTGCATT RHE_CH03778 4007111 - 4006824 - | hypothetical protein TERM 3724 4007218 - 4007272 + G 73 -6.6 -4.2828 | gap 3, opp_overlap 4007227 4007235, overlap 4007227 4007235 CATTGCGCTTCGTGC CACGCGA--AAGGCGAAAACCCGGCTT GCGG GAGCCGGG-TTTCGTCTTTGTCGCGAA TTTTCGTCAATAGCA TERM 3725 4007261 - 4007227 - g 73 -10.8 -3.59979 | gap 1, opp_overlap 4007227 4007218 4007235, overlap 4007235 TCGTGCCACGCGAAA GGCGAAAACCCGGCT TGCGGG AGCCGGG-TTTCGTC TTTGTCGCGAATTTT TERM 3726 4007227 - 4007261 + G 86 -13.7 -3.88985 | gap 1, opp_overlap 4007227 4007235, overlap 4007218 4007235 TCGTGCCACGCGAAA GGCGAAAACCCGGCTT GCGG GAGCCGGG-TTTCGTC TTTGTCGCGAATTTT TERM 3727 4007235 - 4007254 + G 82 -11.4 -4.04579 | opp_overlap 4007227 4007235, overlap 4007227 4007218 CGCGAAAGGCGAAAA CCCGGCTT GCGG GAGCCGGG TTTCGTCTTTGTCGC TERM 3728 4007254 - 4007235 - g 84 -10.7 -4.24002 | opp_overlap 4007235 4007227 4007218, overlap 4007227 CGCGAAAGGCGAAAA CCCGGCT TGCGGG AGCCGGG TTTCGTCTTTGTCGC RHE_CH03779 4007138 - 4007785 + | hypothetical protein TERM 3729 4007795 - 4007810 + G 83 -5.4 -5.07652 | gap 1, overlap 4007792 4007795 4007796 AAGTAGGACTCATTG C-GACGG TCG CCGTCAG TTTTGTTTTCGCGGC TERM 3730 4007842 - 4007874 + G 87 -16.9 -2.94218 | overlap 4007870 GTCCTCGGTTACGGC GCCGACCGGCTGCGG CTG CCGCCGCTCGTCGGC TATCTGATGGCCGGT RHE_CH03780 4007770 - 4009515 + | cation transporter protein RHE_CH03781 4009833 - 4009543 - | hypothetical protein RHE_CH03782 4010030 - 4010626 + | putative transmembrane-associated alkaline phosphatase protein RHE_CH03783 4010649 - 4011164 + | hypothetical protein RHE_CH03784 4011732 - 4011175 - | putative endonuclease protein alkA 4012536 - 4011844 - | DNA-3-methyladenine glycosidase II protein TERM 3731 4013018 - 4013003 - gR 77 -2.4 -5.00616 | overlap 4013006 TCCTCCGGGAAAAAA CATGCC TGGC GGCTCG ATATGCGCAAGGCGC gltX2 4012535 - 4013416 + | glutamyl-Q tRNA(Asp) synthetase RHE_CH03787 4014304 - 4013381 - | putative ribonuclease protein TERM 3732 4014490 - 4014532 + G 73 -3.5 -4.74132 | overlap 4014484 TGCGACGGTGCGCAA GGCGGTTGAT-CTGTCGGC GCTGGAA GCCGACGGCATCGAA-GCC TTTTTGATGGACTAT RHE_CH03788 4014380 - 4015213 + | short chain dehydrogenase RHE_CH03789 4015228 - 4015431 + | hypothetical protein RHE_CH03790 4015660 - 4016238 + | hypothetical protein RHE_CH03791 4016271 - 4017053 + | hypothetical protein etfBch 4017238 - 4017987 + | electron transport flavoprotein, beta subunit TERM 3733 4018677 - 4018713 + G 72 -12.1 -3.28712 | opp_overlap 4018669 CCGACAAGCTCGGTG CCGCCGTCGGCGCCAGC CGT GCGGCCGTCGATGCCGG TTATGCCCCCAACGA etfAch 4018013 - 4018942 + | electron-transport flavoprotein, alpha-subunit TERM 3734 4019010 - 4019039 + F 95 -18.7 -3.23216 | TATCGGTCTACTACT TACTGCCGGGCGA TCCT TCGTCCGGCAGTA TTGCTAATAATGCGG hbdA 4019090 - 4019971 + | 3-hydroxybutyryl-CoA dehydrogenase tlpA 4020811 - 4020149 - | thiol:disulfide interchange protein TERM 3735 4021770 - 4021717 - g 80 -5.3 -4.83615 | gap 2, overlap 4021721 4021722 CATGCCGCAGAAAAA GAATC-CCGATGCGGCCGAAC-TGG TGCGCG CCAAGACCGGCCGCATCAACGGCTC GCTGATCGCACTGCT TERM 3736 4021943 - 4021954 + G 70 -7.2 -4.07568 | opp_overlap 4021936 CGCATGAAGGCGGCG GCCG GCTC CGGC TTTTCAACGGCGACC argH 4020836 - 4022239 + | argininosuccinate lyase TERM 3737 4023608 - 4023630 + G 74 -9 -3.85698 | opp_overlap 4023596 GAACGCGCCGCGCAT CCGCGCCGAC GTG GTCGGCCCCG TTTGTGAGACCGGCG lysA 4022598 - 4023866 + | diaminopimelate decarboxylase protein TERM 3738 4023970 - 4023925 - f 82 -2.5 -5.45802 | overlap 4023932 TGCGTAAAACAAAAA GCTAAAGCGCAAGAAGATCCT CCGA ACGATCGCGGCACGCTTTAGC GGCAAAATCACTTTT TERM 3739 4024219 - 4024231 + G 78 -6.9 -4.63218 | opp_overlap 4024210 ACGAAACGCCTGCTA GCGCG CAC CGTGC TTTTCTTCGAGCAGC TERM 3740 4026393 - 4026405 + G 70 -10.5 -3.53811 | opp_overlap 4026384 4026383 4026393 CGAAATGGGCATGAA GCCCG GCG CGGGC TTTGGCCAGGCTCGA RHE_CH03798 4024135 - 4026795 + | hypothetical protein RHE_CH03799 4027188 - 4026829 - | two-component response regulator protein hpt 4027865 - 4027323 - | hypoxanthine phosphoribosyltransferase protein RHE_CH03801 4028648 - 4027995 - | hypothetical protein TERM 3741 4028433 - 4028472 + g 91 -16.4 -3.57039 | gap 1 CATCGCCAGCAGGAG CGGCGGCCGTACGGCGCGC GCT GC-CGCCATGCGGCTGCTG TTGTCGTTATGGATC ftsE 4028804 - 4029514 + | cell-division ATP-binding protein TERM 3742 4029833 - 4029788 - g 76 -8.2 -4.2349 | gap 2, opp_overlap 4029800 4029803 TTTCGACATGGAAAA GGCGCTGACG-CAGGC-GCGCG ACCT CGCGCTGACTTTCGTCGGCACC AAAAGCGGCCAGATC TERM 3743 4030054 - 4030101 + G 81 -4.1 -5.02074 | opp_overlap 4030069, overlap 4030061 4030066 TCGACCGGCTGGTCT CCATGGCGCACA-CGACGGTGCT GATC GGCACCGGCGTTCTGCTTC-TGG TTTTTTCGGCAATGG TERM 3744 4030066 - 4030089 + G 70 -10.2 -3.59456 | opp_overlap 4030069, overlap 4030061 4030054 TCTCCATGGCGCACA CGACGGTGCT GATC GGCACCGGCG TTCTGCTTCTGGTTT TERM 3745 4030262 - 4030284 + G 76 -5.5 -4.63218 | overlap 4030258 CCTCAAGGGCTCGGC GATCGGCAG CGCGC TTGCCGCTC TTTTCTTCGCCACCG ftsX 4029579 - 4030526 + | cell division protein TERM 3746 4030511 - 4030536 + F 81 -9 -4.46212 | opp_overlap 4030511 CCCGACACGCACAGA CGGCATCGCA AGTTGA TGCCATGCCG TTTTATCGTGAAAGC TERM 3747 4030668 - 4030713 + F 74 -11.7 -3.31144 | gap 1, overlap 4030684 GGCTTGCCGCCGCGG CGCGGTCCGATCCGCCGCCTGC TCC GCTGG-GGCGGCTTTGGCTGCG TTCTGGCGATCGCCC RHE_CH03804 4030731 - 4031306 + | hypothetical protein TERM 3748 4031427 - 4031381 - f 100 -24.9 -2.53213 | opp_overlap 4031384, overlap 4031384 TAACTCTTTAATTCA GAACAGGATTCAGATTCTAGG TTCGG CCTAAAATCTGAATCCTGTTC TGGGGCGGCATCAAA TERM 3749 4031424 - 4031384 - f 100 -20.8 -3.41878 | opp_overlap 4031384, overlap 4031381 CTCTTTAATTCAGAA CAGGATTCAGATTCTAGG TTCGG CCTAAAATCTGAATCCTG TTCTGGGGCGGCATC TERM 3750 4031384 - 4031424 + F 100 -19.3 -3.28924 | opp_overlap 4031381 4031384 CTCTTTAATTCAGAA CAGGATTCAGATTCTAGGT TCG GCCTAAAATCTGAATCCTG TTCTGGGGCGGCATC plsC 4031505 - 4032302 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase protein chaC 4032872 - 4032303 - | cation transporter protein TERM 3751 4033466 - 4033420 - g 77 -15.8 -2.66272 | overlap 4033416 4033432 TCGCACCGAAATTCA CCTGCGCCAGAACGGCGCCG ATCTCGA CGGCGCCATCTCGGTGCAGG ATGCGGAGACCGCGA TERM 3752 4033835 - 4033867 + G 72 -11.9 -3.35813 | opp_overlap 4033820 GTCTCGGTCGATCTC GTCGTCGACCGTGGC AAT GCCACCGTCAGCGGC TTCATTCCGCTCGGC RHE_CH03807 4032884 - 4033900 + | hypothetical protein RHE_CH03808 4034328 - 4033909 - | putative acetyltransferase protein TERM 3753 4034121 - 4034092 - G 76 -8.5 -4.20516 | gap 1, overlap 4034095 TTCCCAGGCAAGAAA CAGCGCCGTGCCGA CAC CCGAC-CGGCGATG GGCAGGCTGGATACG tyrC 4035260 - 4034334 - | cyclohexadienyl dehydrogenase TERM 3754 4034645 - 4034667 + g 72 -12 -3.30441 | overlap 4034647 CCGTCACCGTCTCCA GATCGTCGGC CGT GCCGACGATG TTGTAGGCGATGATA TERM 3755 4034647 - 4034665 + g 80 -14.6 -3.21924 | overlap 4034645 GTCACCGTCTCCAGA TCGTCGGC CGT GCCGACGA TGTTGTAGGCGATGA hisCch2 4036354 - 4035257 - | histidinol-phosphate aminotransferase TERM 3756 4035367 - 4035350 - G 72 -7.7 -4.14243 | gap 1 CAGCGCATTGGAAAA GCCGTAGC TGC GC-ACGGC GCGAAGAATGTAACC RHE_CH03811 4037143 - 4036478 - | putative SAM-dependent methyltransferase protein TERM 3757 4036633 - 4036611 - G 83 -7.6 -4.65168 | overlap 4036602 ATGACACCGGAAAAA GCCGGCCATA AGG TGCGGCCGAC TCGCTCGAAGGCGCG gloB 4037308 - 4038078 + | hydroxyacylgluthatione hydrolase protein RHE_CH03813 4038078 - 4038500 + | hypothetical protein RHE_CH03814 4039359 - 4038511 - | hypothetical protein RHE_CH03815 4040211 - 4039432 - | hypothetical protein TERM 3758 4039831 - 4039865 + g 71 -12.8 -3.09671 | overlap 4039834 GATCCAGTTCTTCGG CCGTTTCGGCGGCGGC GTC GTCGTCGCCGAGATGA TGTTGCCATTGCGGT TERM 3759 4039834 - 4039862 + g 78 -15.3 -2.76046 | overlap 4039831 CCAGTTCTTCGGCCG TTTCGGCGGCGGC GTC GTCGTCGCCGAGA TGATGTTGCCATTGC rpmB 4040452 - 4040748 + | 50S ribosomal protein L28 TERM 3760 4040774 - 4040811 + F 74 -12.8 -2.76261 | opp_overlap 4040779 4040794 4040796, overlap 4040773 4040779 TCTTTCATACGGCTT CAAAAGGCTTGAACGG ATAACA CCGGACAAGCCTTTTG CTTTGCCGGTTCAGC TERM 3761 4040779 - 4040806 + F 76 -6.9 -4.55128 | opp_overlap 4040779 4040794 4040796, overlap 4040774 4040773 CATACGGCTTCAAAA GGCTTGAACGG ATAACA CCGGACAAGCC TTTTGCTTTGCCGGT RHE_CH03817 4040860 - 4041495 + | hypothetical protein TERM 3762 4041519 - 4041499 - T 75 -12.5 -3.05844 | overlap 4041509 4041510 CGCGCCAGCTGAACA CGCCGGAGA AGT TCACCGGCG CCGGCGGACCGCGCC RHE_CH03818 4042077 - 4041511 - | hypothetical protein TERM 3763 4041602 - 4041623 + g 73 -10.9 -3.55801 | gap 1, opp_overlap 4041600 4041596 CGCGACGAATCGAGC CGCAGCACCG GCA CGGT-CTGCG TTTCCAGCCATTCCT RHE_CH03819 4043166 - 4042141 - | hypothetical protein cobT 4045092 - 4043191 - | cobalamin biosynthesis protein cobS 4046097 - 4045105 - | cobalamin biosynthesis protein dnaJ3 4047212 - 4046403 - | DnaJ family molecular chaperone RHE_CH03823 4047255 - 4047407 + | putative transcriptional regulator protein RHE_CH03824 4048687 - 4047452 - | putative hemolysin protein aroB 4049892 - 4048759 - | 3-dehydroquinate synthase TERM 3764 4049628 - 4049639 + g 81 -4.4 -5.00616 | overlap 4049589 CAGTAATGAGATGTT CGAA GCTC TTCG TTTTTTCACCGGCCG TERM 3765 4049749 - 4049763 + g 76 -12.8 -3.53012 | TTCGTCGGTGATGAT GGCCGC CTT GCGGCC TTTGAGACGCGAGGC aroK 4050476 - 4049889 - | shikimate kinase protein TERM 3766 4051223 - 4051242 + G 71 -12.8 -3.05536 | CCCGGGTCAACTGCA GCGCCGGC GCAT GCTGGCGC TCTTAGAACTGCTTT xerD 4050807 - 4051760 + | site-specific tyrosine recombinase XerD TERM 3767 4052281 - 4052259 - g 73 -11.2 -3.55444 | opp_overlap 4052258 TCCGCATCCTTGAAA TGGCCGACCG TTT CGGCCTGCCA GTGATTTCCCTGGTG accA 4051823 - 4052776 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 3768 4052800 - 4052820 + F 70 -9.7 -3.45514 | GCGCCTTTCAGCGAT TGGGGCCAA ATC TTGGCCACA TTGATATTATCTGTA TERM 3769 4053593 - 4053569 - g 70 -7.2 -4.10161 | gap 1, overlap 4053571 4053572 4053581 CATGACGGCGGAAAA CATGGTCAAGC ATCG GCTTGACC-CG AACTACGACTTCTGG RHE_CH03829 4052973 - 4054205 + | hypothetical protein TERM 3770 4054296 - 4054280 - g 76 -10.9 -3.79138 | AAGACACGCAGGAAA CTTGCCA CCA TGGCAAG CGGCGCGCTCATCCT TERM 3771 4054409 - 4054396 - g 76 -8.1 -4.2349 | opp_overlap 4054395 4054404 GGTCGAGACGGAAAA GACCG AGGG CGGTC ATCGCTTCCTGATCC RHE_CH03830 4054211 - 4054435 + | hypothetical protein RHE_CH03831 4055662 - 4054499 - | cobalamin synthesis protein dacF2 4056777 - 4055695 - | D-alanyl-D-alanine carboxypeptidase protein hipO 4056987 - 4058150 + | hyppurate hydrolase protein TERM 3772 4058161 - 4058181 + T 100 -15.5 -4.55287 | opp_overlap 4058161 TCTGATGACAATTAA GGCTTGGCT TCG AGCCAAGCC TTTTGTATGCATGGC TERM 3773 4058181 - 4058161 - T 90 -15.5 -3.47322 | opp_overlap 4058161 TCTGATGACAATTAA GGCTTGGCT TCG AGCCAAGCC TTTTGTATGCATGGC TERM 3774 4058502 - 4058456 - T 71 -12.3 -2.82516 | gap 1 TCCGCCAGGATCAGA GGCGATCGGC-TCGGACGTACC TGGG GGTATGCCCATCGCCAATCGCC TCTGCCCTGACGAAA RHE_CH03835 4058899 - 4058603 - | hypothetical protein RHE_CH03836 4059458 - 4058940 - | hypothetical protein TERM 3775 4059433 - 4059404 - G 76 -7.8 -4.36914 | gap 1 GCGCCTGCGAGAAAA CCGT-GCCGCCGG CAAGC CCGGCGACGATGG CGACTATTCTGGCAA TERM 3776 4059606 - 4059589 - R 79 -9.9 -4.06419 | GCTCCTGACAAACAA GTTGCTC CCGT GAGCAAC TGAAAAAGAGAGGTT TERM 3777 4059919 - 4059896 - R 77 -10.3 -3.80625 | gap 1, opp_overlap 4059897 4059897 4059898, overlap 4059873 4059897 TGCCGATAAGGCAAA GCCCGGCCGA TCCTT TCGGCCGG-C GTTTTCATCTGGTCT TERM 3778 4059897 - 4059920 + r 88 -10.3 -4.38171 | gap 1, opp_overlap 4059873 4059896 4059897, overlap 4059897 4059898 GCCGATAAGGCAAAG C-CCGGCCGA TCCTT TCGGCCGGCG TTTTCATCTGGTCTC TERM 3779 4059897 - 4059919 + r 70 -10.5 -3.2218 | opp_overlap 4059873 4059896 4059897, overlap 4059897 4059898 GCCGATAAGGCAAAG CCCGGCCGA TCCTT TCGGCCGGC GTTTTCATCTGGTCT TERM 3780 4059898 - 4059918 + r 78 -14 -2.52585 | opp_overlap 4059873 4059896 4059897, overlap 4059897 4059897 CCGATAAGGCAAAGC CCGGCCGA TCCTT TCGGCCGG CGTTTTCATCTGGTC TERM 3781 4060093 - 4060069 - R 74 -12.1 -3.1505 | ACCATCGCCTATGAA TTGCAGCGGCC GGT GGCCACGGCAA AGACTGATCGTCCGC TERM 3782 4060205 - 4060178 - R 77 -11.9 -3.31322 | opp_overlap 4060180 4060181 GCCAACCTGTGAGAA CGCCGCGGCGC GCGATT GTGCCACGGCG TCGCGCTCCGGCCGA RHE_CH03837 4060530 - 4060243 - | hypothetical protein RHE_CH03838 4061243 - 4060593 - | hypothetical protein TERM 3783 4061391 - 4061378 - H 75 -5.9 -4.56597 | opp_overlap 4061385 4061387, overlap 4061380 GTGTTTGGCCAAAAA GGCCG GCGG CAGCC AAGTGCCTGTTTTCA TERM 3784 4061642 - 4061632 - g 76 -8.2 -4.12188 | overlap 4061620 4061633 TGACGACCGGCAAAA CCGC GCC GCGG CGCCTCAGCATCTTC dxr 4061616 - 4062806 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase RHE_CH03840 4063910 - 4062825 - | putative sugar ABC transporter, ATP-binding protein TERM 3785 4063078 - 4063111 + g 73 -11 -3.53811 | gap 1, overlap 4063074 CCGAGCGTCACGGCG GCGCCG-GCCGGC CTGTCTGCC GCTGGCACGGCGC TTTCGACGCGCTCGC RHE_CH03841 4065843 - 4063921 - | hypothetical protein RHE_CH03842 4066726 - 4065863 - | putative sugar ABC transporter, permease protein RHE_CH03843 4067640 - 4066723 - | putative sugar ABC transporter, permease protein TERM 3786 4067688 - 4067713 + r 74 -10.3 -3.63073 | CCGGGAAGCTGCCAC CGCTCCCCGGC CGCG GCCCGGGAGAG TTATTGGCCGCTATC RHE_CH03844 4068952 - 4067714 - | putative sugar ABC transporter, substrate-binding protein RHE_CH03845 4069921 - 4069010 - | LacI family transcriptional regulator TERM 3787 4069455 - 4069445 - G 90 -2.4 -5.47218 | overlap 4069447 CCGCACCGAAAAAAA GTCC TCC GGCC CGGTGACATGGGCAA TERM 3788 4070241 - 4070222 - R 74 -10.8 -3.64103 | GAGCGACAGGGCAAA GCTGGTTA ATCT TAACCAGC TGATAAGCGCGGAAC TERM 3789 4070272 - 4070290 + r 73 -13.2 -2.72379 | opp_overlap 4070264 4070263 4070260 4070275, overlap 4070264 4070275 GAACAATCTCCGTCA GAACCTCC GAT GGAGGTTC TGATTCGCGGATTAG hemAch 4071542 - 4070328 - | 5-aminolevulinate synthase TERM 3790 4071622 - 4071639 + H 77 -3.4 -5.12617 | gap 1, opp_overlap 4071622 TTGGTTTAACATCAA CTGCGGC AAAAG GCC-CAG TTTTTTGAATGATTC TERM 3791 4071719 - 4071703 - H 71 -7.2 -4.09685 | GGTCATGCGGCAAAA GCGCCC GAAAT AGGCGC AAAACCCGCAAGGCG TERM 3792 4071838 - 4071826 - H 70 -3.4 -4.79949 | GTGCCAAAAAAACAA TAGG GACGG CCTA TGCCCATTGGGCGAC RHE_CH03847 4071871 - 4072128 + | hypothetical protein TERM 3793 4072184 - 4072151 - f 79 -8.9 -4.28049 | opp_overlap 4072158, overlap 4072158 GGCAAAACGCTAAAA CAGGAAATCCCGGAC ACAC ATCCGGGATTTTTTG TACTAAATTAGCGCG TERM 3794 4072158 - 4072177 + F 95 -9.3 -5.31877 | opp_overlap 4072151 4072158 CGCTAAAACAGGAAA TCCCGGA CACACA TCCGGGA TTTTTTGTACTAAAT TERM 3795 4072177 - 4072158 - f 79 -10 -4.07678 | opp_overlap 4072158, overlap 4072151 CGCTAAAACAGGAAA TCCCGGAC ACAC ATCCGGGA TTTTTTGTACTAAAT TERM 3796 4073133 - 4073158 + G 70 -11.8 -3.21924 | opp_overlap 4073131 4073130, overlap 4073131 4073131 GGCGCTGAAGAAGGC CGGCGAGCGC CTGCGC GCGCTCGGCG TCTTCTCAAGCGTCA TERM 3797 4074131 - 4074149 + G 76 -8.8 -4.13945 | GATATGCCACACCTT TCGGGCCG CTG CGGCTTGA TTTTGCCGTGCCGCT RHE_CH03848 4072354 - 4074225 + | putative outer membrane protein, protective antigen TERM 3798 4074203 - 4074240 + F 77 -12.1 -3.35992 | gap 1, opp_overlap 4074181 4074201 ATTATGGAATTTATG CCGGCATCGGCCAATCCT TCT AGGATT-GCCGATTCGGG TTCCTTCCGATCGAT TERM 3799 4075157 - 4075172 + G 70 -7.5 -4.07568 | AGCTCGCTTCTTCCC GCGGC ATTCCG GCCGC TTTTCGCCGGCCAGA TERM 3800 4076373 - 4076337 - g 84 -16.6 -3.02511 | TCGATTTTCCCAATA TCGGCTTGCTCGCCGC ACTCG GCGGCCAGAAAGCCGA AGGCGATCTCAAGGG TERM 3801 4077694 - 4077673 - g 70 -7.9 -4.07124 | gap 1, overlap 4077653 4077674 CACGAGCCACACAAA GCGTGCCGGC CTT GCCGGC-CTC GGCGTAAGGGCGTCC TERM 3802 4079450 - 4079482 + G 84 -15.5 -3.33696 | GGCAATCTCCCCTTC GCCGTGCTCGGCGCG CCG CTTGCCGAGCAGGGC TTCGTTGCCGAGGGC RHE_CH03849 4074287 - 4080706 + | hypothetical protein RHE_CH03850 4081153 - 4080725 - | putative transcriptional regulator protein argI 4081285 - 4082220 + | arginase protein rocD 4082234 - 4083433 + | ornithine--oxo-acid transaminase cheW5 4083631 - 4084107 + | chemotaxis signal transduction protein TERM 3803 4084164 - 4084135 - T 90 -16.3 -3.28791 | opp_overlap 4084135 ATTCGCCGTCGAGAA CCGCCCGTCCGGG CTCG CCCGTCCGGGCGG TTTTTTATTTGCGCA TERM 3804 4084135 - 4084164 + T 100 -16.3 -5.63517 | opp_overlap 4084135 ATTCGCCGTCGAGAA CCGCCCGTCCGGG CTCG CCCGTCCGGGCGG TTTTTTATTTGCGCA TERM 3805 4085180 - 4085164 - T 79 -12.3 -3.6715 | overlap 4085168 GCAGTGAATGTGAAA GGCAGCA TGC TGCTGCC TCCGCAGGCATGAGC fdsD 4085449 - 4085204 - | NAD-dependent formate dehydrogenase, delta subunit protein TERM 3806 4085242 - 4085288 + g 72 -8 -4.12942 | gap 1, overlap 4085243 4085245 4085251 CCGCCGGTTTGCGGA TGAGGGGAGCGGCCTGCA-GC ACGAGG GCATCCAGGCCGTTTTCCTCC TTTTCGAGAATTTCG TERM 3807 4085251 - 4085279 + g 76 -6.7 -4.42667 | gap 1, overlap 4085245 4085243 4085242 TGCGGATGAGGGGAG CGGCCTGCA-GC ACGAGG GCATCCAGGCCG TTTTCCTCCTTTTCG fdsC 4086263 - 4085439 - | formate dehydrogenase accessory protein TERM 3808 4085790 - 4085772 - G 81 -13.8 -3.54475 | GCCGGGACGATAGAA GGCGGCGC CAT GCACCGCC CGCGTCTCGCGATGC fdsA 4089263 - 4086384 - | formate dehydrogenase, alpha subunit protein fdsB 4090886 - 4089330 - | formate dehydrogenase, beta subunit protein TERM 3809 4090444 - 4090417 - G 70 -7.7 -4.07687 | gap 2, overlap 4090388 4090418 ATGCCGGTGGGAAAA CCGGCACCGCCGC GTCC GCG-CAG-GCCGG AATCCGTGACTTCCT fdsG 4091362 - 4090883 - | formate dehydrogenase subunit gamma RHE_CH03860 4092391 - 4091498 - | LysR family transcriptional regulator RHE_CH03861 4092810 - 4092469 - | ArsR family transcriptional regulator RHE_CH03862 4093738 - 4092914 - | putative oxidoreductase protein soxR 4094278 - 4093808 - | redox-sensitive transcriptional regulator-activator protein TERM 3810 4094289 - 4094306 + H 72 -6.3 -4.37886 | overlap 4094283 TTCATCGCCTATTGA CCTCAAT ATTA GTTGAGG TTTTATAACCCCTCC TERM 3811 4094499 - 4094524 + H 100 -14.1 -5.21709 | gap 1, opp_overlap 4094499 CGGAACCTCGGAAAA CACCCGGAC-AG GAC CTCGTCCGGGTG TTTTTTCATCTGCGA TERM 3812 4094524 - 4094499 - H 100 -14.1 -4.11484 | gap 1, opp_overlap 4094499 CGGAACCTCGGAAAA CACCCGGAC-AG GAC CTCGTCCGGGTG TTTTTTCATCTGCGA TERM 3813 4095491 - 4095516 + G 73 -8.9 -4.08706 | opp_overlap 4095491 AATCTTTGCCGAATA TGCCGGCGCTG CAAG CGGCCTCGGCA TTTATATCCTCAACG TERM 3814 4095613 - 4095628 + G 74 -10.4 -3.79251 | GCCTCTTCGCGCTGA CGCTGG TTAT CCAGCG TTTCGTCATGCCCTG RHE_CH03864 4094865 - 4095671 + | putative nitrate/sulfonate/bicarbonate ABC transporter, permease protein RHE_CH03865 4095668 - 4096480 + | putative nitrate/sulfonate/bicarbonate ABC transporter, ATP-binding protein RHE_CH03866 4096545 - 4097555 + | putative nitrate/sulfonate/bicarbonate ABC transporter, substrate-binding protein TERM 3815 4098029 - 4098053 + G 83 -4.9 -5.0538 | overlap 4098031 CTCGGGACTACTGTT CATGAGCCAGT GGC ATTGGCGCACG TTTTTTCCCGTCGAA RHE_CH03867 4097643 - 4098854 + | putative acyltransferase protein pssA3 4099030 - 4099767 + | exopolysaccharide production protein TERM 3816 4099849 - 4099838 - T 79 -7.2 -4.65263 | ACTGCGCAAAACAAA GCGC TAAA GCGC GAGAGGCGAATCTGA TERM 3817 4100099 - 4100082 - T 100 -9.8 -5.92399 | opp_overlap 4100082 4100081 CAACAAAACAAAAAA GCGGCC TTCGAG GGCCGC CTTTCATTGATGCTG atpC 4100531 - 4100124 - | F0F1 ATP synthase subunit epsilon atpD 4102197 - 4100770 - | F0F1 ATP synthase subunit beta TERM 3818 4102182 - 4102196 + g 75 -4.2 -4.6759 | overlap 4102184 TGCCGACAGAGCGGG TAGCTG CCT CAGCCA TTTTCTTACCCTCTT atpG 4103104 - 4102220 - | F0F1 ATP synthase subunit gamma TERM 3819 4103051 - 4103078 + g 76 -6.2 -4.64598 | CGCCTTGGTGATCTT CTGCGTCGCCTT GACG GAGGCGATCCGG TTTTTCAGATCCTTA atpA 4104660 - 4103131 - | F0F1 ATP synthase subunit alpha atpH 4105361 - 4104660 - | F0F1 ATP synthase subunit delta RHE_CH03874 4105871 - 4105482 - | hypothetical protein TERM 3820 4105711 - 4105695 - G 76 -5.7 -4.59081 | overlap 4105696 4105697 GAAACCGAGATAAAA GCCGCCC ATG GAGCGCC CTTCGGCGAAGCCTT priA 4108195 - 4105979 - | primosome assembly protein PriA TERM 3821 4106150 - 4106104 - G 73 -7 -4.25104 | GTCCGTGGACCAAAA GGCGGAAACGATGGCGGCCGCG CAC CAGGGCAAGCGGCGCTTCCGCC GGGCCGAGCACTGAG TERM 3822 4106911 - 4106897 - G 76 -10 -3.91897 | overlap 4106902 GCGCCGATTGAGAAA GAGCAG CGC CTGCTC GCGCCTCTCCACGGT RHE_CH03877 4109726 - 4109136 - | GNAT family acetyltransferase RHE_CH03876 4108381 - 4109313 + | dihydrodipicolinate synthase protein TERM 3823 4109545 - 4109530 - GT 71 -8.2 -3.91897 | GGGCGGACGTAGAAA CGCCGC ATCC GCAGCG CTCCCGGCAGGGCGG RHE_CH03878 4110708 - 4109776 - | putative acyltransferase protein xerC 4110863 - 4111798 + | site-specific tyrosine recombinase XerC RHE_CH03880 4111977 - 4113056 + | hypothetical protein RHE_CH03881 4113569 - 4113069 - | putative cytochrome b561 protein TERM 3824 4113645 - 4113618 - R 100 -21.4 -4.53636 | opp_overlap 4113614 4113613 ATGAGACAACTAAAA CAGCCGCTTGCC TCTC GGCAAGCGGCTG CGCGCTTCATTACCA lpdAch2 4115077 - 4113671 - | dihydrolipoamide dehydrogenase RHE_CH03883 4115742 - 4115104 - | LysE family amino acid efflux protein RHE_CH03884 4116514 - 4115762 - | putative oxidoreductase protein RHE_CH03885 4117020 - 4116511 - | hypothetical protein RHE_CH03886 4117787 - 4117038 - | hypothetical protein TERM 3825 4117779 - 4117724 - G 70 -10.4 -3.57144 | gap 2, overlap 4117757 CCGCCGATGCGGAAA CCGGGACATGCGCGGCGGCAGCGC AAAGAACAAG GCGC-GCCGCT-CGCATGATCCGG TTCCGCATCGAAAAG sucB 4119055 - 4117799 - | dihydrolipoamide acetyltransferase kgd 4122402 - 4119418 - | alpha-ketoglutarate decarboxylase sucD 4123472 - 4122570 - | succinyl-CoA synthetase subunit alpha TERM 3826 4122727 - 4122759 + g 70 -10.5 -3.62522 | gap 1, opp_overlap 4122692 4122747, overlap 4122734 4122734 GTACGGCCCTTCGGC GCCGTGCGGCCGGC GATGAA GCCGGCCAT-CGGC TTCTTGCGGCCCTTC TERM 3827 4122734 - 4122771 + g 71 -9.1 -3.74526 | gap 1, opp_overlap 4122747, overlap 4122727 4122734 CCTTCGGCGCCGTGC GGCCGGCGATGAAGCCGG CCA TCGGCTTC-TTGCGGCCC TTCTTGGCTTCGTCC TERM 3828 4123245 - 4123266 + g 74 -5.7 -4.42238 | opp_overlap 4123247, overlap 4123247 CGGCGGAACGTAGAT GACGGTCGC ATCG GCGCCGGTC TTTTCCTTGCCCTCG sucC 4124684 - 4123491 - | succinyl-CoA synthetase subunit beta mdh 4125681 - 4124719 - | malate dehydrogenase TERM 3829 4125838 - 4125819 - R 76 -5 -4.70659 | opp_overlap 4125819 4125820, overlap 4125820 4125836 GTTTAGATGCAAAAA CTCTTACG TAAA CGTAAGAC ATTTTGTCACCGTAT RHE_CH03892 4127019 - 4125856 - | putative ATP-binding protein omp4 4127599 - 4127084 - | outer membrane lipoprotein TERM 3830 4127747 - 4127727 - R 78 -6.1 -4.75174 | CACCCAATCGAAAAA CGATACAGT TCA ACTGTCCCG CTGCAAAACTTCCTG TERM 3831 4127874 - 4127844 - R 77 -11 -3.64488 | overlap 4127842 AATGTCCTGAAAAGA TCGTACCGCAGCCG CGA CGGCTTCGGATCGA AGCCGTCCATCGCAT sdhB 4128687 - 4127908 - | succinate dehydrogenase iron-sulfur subunit TERM 3832 4128648 - 4128661 + g 72 -3.7 -4.56597 | overlap 4128647 GCCAGACCTTGCCTT CGCGC ATCT GCGAG TTTTTGGGGAGAGCG sdhA 4130547 - 4128706 - | succinate dehydrogenase flavoprotein subunit TERM 3833 4130097 - 4130137 + g 72 -11.7 -3.39327 | overlap 4130100 GGCCGGTGCGGTCGG CAACGGCGCAGGTGCGCTG CAC CGGCGGACCTTCGCCGTAA TTCTGCATGTGGCCG TERM 3834 4130100 - 4130134 + g 90 -17.8 -2.85712 | overlap 4130097 CGGTGCGGTCGGCAA CGGCGCAGGTGCGCTG CAC CGGCGGACCTTCGCCG TAATTCTGCATGTGG sdhD 4130935 - 4130555 - | succinate dehydrogenase subunit D, membrane anchor protein sdhC 4131341 - 4130946 - | succinate dehydrogenase cytochrome B-556 subunit protein TERM 3835 4131635 - 4131589 - H 76 -3.8 -4.89477 | gap 2, overlap 4131590 TGCGTAAGAACAAAA GGTTAGAGCCGTTCTGCGCTTC GGCGA GAAGCG--GAACCGCCCCAACG AAACTGGTCTTTTCG RHE_CH03898 4131759 - 4132265 + | hypothetical protein RHE_CH03899 4132915 - 4132262 - | putative methyltransferase protein TERM 3836 4132559 - 4132549 - G 74 -2.4 -4.89393 | TAAATCCGAGAAAAA CGCC GTT GGCC TTGGCATTCAGCCGG TERM 3837 4132766 - 4132755 - G 72 -7.2 -4.18018 | opp_overlap 4132765 CCCGCCCAGGCAAAA GCCC AGAA GGGC GGCGGCAGGCCGATC RHE_CH03900 4133353 - 4132922 - | hypothetical protein RHE_CH03901 4133649 - 4133356 - | YciI-like protein gpsA 4134643 - 4133660 - | glycerol-3-phosphate dehydrogenase (NAD(P)+) protein TERM 3838 4134451 - 4134415 - G 74 -5 -4.62336 | gap 2, overlap 4134418 AGGGCATCGCAAAAA GCACGATGGAGGCGCCGG CGA CCGCCTCCGCC-TCG-GC GGAGAATTCAAGCGA gcp 4135725 - 4134640 - | O-sialoglycoprotein endopeptidase TERM 3839 4135679 - 4135700 + g 86 -13.7 -3.96216 | opp_overlap 4135678 4135677 TTGCGCTCGACAACG GCTGCGGCG GTCT CGTCGCAGC TTGTTTCGATGCCGA TERM 3840 4136477 - 4136450 - g 86 -6.3 -4.96848 | gap 1 TCGGCGACACAAAAA TCGATGACCTGC TGGCG GC-GGTCAACGA TGCCACGACCTTCGA hemC 4135810 - 4136739 + | porphobilinogen deaminase TERM 3841 4137249 - 4137263 + G 78 -7 -4.66537 | overlap 4137241 TTTTTTCCGGCCATC GCCCGG ATG CCGTGC TTTTCTATTCCCGGC hemD 4136747 - 4137454 + | uroporphyrinogen-III synthase RHE_CH03906 4137544 - 4138764 + | hypothetical protein TERM 3842 4139243 - 4139223 - g 70 -10.3 -3.59315 | opp_overlap 4139234 CCAACGATCCGGAAA CGCGCGAGC TCG GCCTGCGCG GCCTCTATCTCGAAG TERM 3843 4139515 - 4139549 + G 74 -14.2 -2.63073 | overlap 4139514 4139514 TCCGGCCGGCGCCCG CGACGACGCGCTGCAG GCG CTGAAGCTCGCCGTCG ATCTTGTTCCGGCCG RHE_CH03907 4138769 - 4140376 + | hypothetical protein RHE_CH03908 4140394 - 4140879 + | hypothetical protein guaA2 4140869 - 4141621 + | glutamine amidotransferase RHE_CH03910 4142881 - 4141649 - | putative permease protein TERM 3844 4142076 - 4142059 - G 82 -5.5 -4.83169 | overlap 4142060 AGGCGGCCAGAAAAA TCGCCAT GACG ATGGCGC CAAGCCCCGGTGCCG RHE_CH03911 4143021 - 4143311 + | hypothetical protein TERM 3845 4143475 - 4143463 - gT 71 -6.2 -4.32046 | TCCGGAAAAAGGAAA GGCC AATAA GGCC CTGATCGCGCTCGTT TERM 3846 4143558 - 4143585 + GT 90 -15.6 -3.53091 | opp_overlap 4143558 CCGCACGCAAAAAAA TCCTCCGGATCG AAGG CGACCCGGAGGA TTTGGCAAGAAAACT TERM 3847 4143585 - 4143558 - gT 100 -17.8 -5.47218 | opp_overlap 4143558 CCGCACGCAAAAAAA TCCTCCGGATCG AAGG CGACCCGGAGGA TTTGGCAAGAAAACT RHE_CH03912 4143281 - 4143619 + | hypothetical protein ppa 4144160 - 4143624 - | inorganic pyrophosphatase RHE_CH03914 4144815 - 4144309 - | putative acetyltransferase protein TERM 3848 4144970 - 4144989 + r 87 -12.1 -4.09864 | opp_overlap 4144970 GCGCACAATAAAAAA CCCCGGC GCGGAG GCCGGGG TTTTAAAGCGTAACT TERM 3849 4144989 - 4144970 - R 100 -12.1 -5.55769 | opp_overlap 4144970 GCGCACAATAAAAAA CCCCGGC GCGGAG GCCGGGG TTTTAAAGCGTAACT typA 4146833 - 4145013 - | GTP-binding elongation factor protein (tyrosin phosphorylated protein) TERM 3850 4146970 - 4146942 - R 75 -11 -3.53012 | gap 1, opp_overlap 4146942 4146938 4146943 4146945, overlap 4146943 GGGTCGCGCGCGAAA GCTGCGGCATGGC TGCC GCCATGCCGCT-C GGTTCTCTGTCATCA TERM 3851 4146945 - 4146968 + r 86 -18.2 -2.65145 | opp_overlap 4146942 4146943, overlap 4146943 4146942 4146938 TCGCGCGCGAAAGCT GCGGCATGGC TGCC GCCATGCCGC TCGGTTCTCTGTCAT dcp 4149080 - 4146993 - | peptidyl-dipeptidase Dcp protein TERM 3852 4147255 - 4147237 - G 70 -7.3 -3.99775 | ATGTAGGAATAATAA CCGGCCG AATAG CCGCCGG AGAAGACGTGTTGGA TERM 3853 4147697 - 4147755 + g 81 -12.5 -3.73068 | opp_overlap 4147733 GTGCCGGCTTGCCCT CGGCCGGCTTGGCGAAATTGCAGA-CGTT GTA GATGATCGGCAATT-CGCCGTGGCGGCCG TTCTTCAGTTCCAGC TERM 3854 4148913 - 4148925 + g 70 -10.5 -3.55071 | overlap 4148920 CGTATTCTCGAATGT CGGCG CAT CGCCG TTTCCGGCGATCTCG RHE_CH03917 4149308 - 4149739 + | hypothetical protein RHE_CH03918 4150442 - 4149741 - | LysE family amino acid efflux protein TERM 3855 4150322 - 4150264 - G 71 -13 -3.06228 | gap 1, overlap 4150263 CCCATCATAAACAAC GCGCCGGCCTTGC-GCCCCTGCCCGGC GCCGAT GCCGAGCAGTTGCAGGAAGGCGGGCCC GGGAATGAGCACGTA TERM 3856 4150360 - 4150343 - G 74 -5.5 -4.43844 | overlap 4150344 TGAGCACGTAGAAAA GCGCC GCCAGGAA GGCGC CGAAGAGCAGGGACT RHE_CH03919 4150925 - 4150485 - | hypothetical protein RHE_CH03920 4151426 - 4151019 - | putative stress-induced OsmC-like protein TERM 3857 4151238 - 4151219 - G 77 -15 -2.87344 | CAGCGTCGGCAGACA CGCGGAGC TGGC GCTCCGCG GCCGCCCTTCCGATG TERM 3858 4151563 - 4151573 + H 73 -5.4 -4.55287 | opp_overlap 4151557 4151538, overlap 4151558 GAGCAGAAGCGAGAG TGAG CCT CTCA TTTTCTCTCGCTACA RHE_CH03921 4151681 - 4151926 + | hypothetical protein TERM 3859 4151959 - 4151922 - T 77 -12 -3.30212 | opp_overlap 4151953, overlap 4151915 4151911 4151923 AAGAGCAACCATCAA GGTGACGATGGCCACG CTTCGC CGCGGCCATCGTCAAA GAATTAGGCGCTTCA TERM 3860 4151958 - 4151923 - T 82 -15.5 -2.57404 | opp_overlap 4151953, overlap 4151915 4151911 4151922 AGAGCAACCATCAAG GTGACGATGGCCACG CTTCGC CGCGGCCATCGTCAA AGAATTAGGCGCTTC RHE_CH03922 4152868 - 4151972 - | LysR family transcriptional regulator TERM 3861 4153183 - 4153201 + r 73 -8.8 -3.9373 | overlap 4153174 CTATGTCGGCGTGTC GGCCGC TCTCTTT GCGGCC TTTGCCTTTTCGCTC TERM 3862 4154162 - 4154185 + r 82 -16 -2.75975 | gap 1, opp_overlap 4154162, overlap 4154159 AGGAGACACGAAAAA GCCCGCGCGGC GAT GCCG-GCGGGC TCATCTCTGTTCGAA TERM 3863 4154185 - 4154162 - R 100 -16 -4.85129 | gap 1, opp_overlap 4154159 4154162 AGGAGACACGAAAAA GCCCGCGCGGC GAT GCCG-GCGGGC TCATCTCTGTTCGAA argG2 4155436 - 4154213 - | argininosuccinate synthase TERM 3864 4156270 - 4156244 - g 72 -4.3 -4.57073 | gap 1, opp_overlap 4156244 4156245, overlap 4156225 GACCGCGCGGAAAAA CCG-GCCGGCGC CTGG ACGCCGGAGCAG ACGGTCGATTTCATG RHE_CH03925 4155593 - 4156465 + | oxidoreductase protein TERM 3865 4156573 - 4156538 - f 75 -9.1 -4.03321 | AGACCAAACAGCAAA TGCGCGTCGCATGAA TCAAGT TTAATGCAACACGCA TGAGAAGGTTTGATT RHE_CH03926 4156728 - 4157288 + | LysE family amino acid efflux protein RHE_CH03927 4158160 - 4157366 - | putative ABC transporter, ATP-binding protein TERM 3866 4157931 - 4157908 - G 71 -13.1 -3.03124 | opp_overlap 4157923 4157923 GCGGATCCTGGAAGA CGCGCGCCA CCAGGC CGGCGCGCG CCGCCGTCGATTTGC RHE_CH03928 4159035 - 4158157 - | putative sugar ABC transporter, permease protein TERM 3867 4159129 - 4159094 - R 100 -19.8 -3.02511 | CGCAGCCTTTTAATA CTTCAGCCGCCCCCGT GCAA ACGGGAGCGGCTGAAT GTGAATGGTCGATGT RHE_CH03929 4160110 - 4159157 - | putative ABC transporter, substrate-binding protein TERM 3868 4159526 - 4159568 + g 81 -10.4 -4.19238 | overlap 4159524 AGCACCCTGAACCTC GGCCGATTTGGTGGCCGCTG ATT CGACGACCGTCAAGCCGGCC TTTTCGGCTTCGGCC TERM 3869 4159711 - 4159733 + g 73 -6.8 -4.32048 | opp_overlap 4159711, overlap 4159706 4159704 GAGACATGTCGGAAA GGCCGGTGAC ATT GCCGCCGGGC TTTTCCATGTTCTTG RHE_CH03930 4161286 - 4160204 - | hypothetical protein TERM 3870 4161626 - 4161660 + r 71 -8.5 -3.92075 | opp_overlap 4161627, overlap 4161627 4161635 TCACTATAGATGGAA ATGGCAAGAGCCGGC ACAAG GCCGGCTCTTGAGAC TTTGTGACTGGAAGT TERM 3871 4161659 - 4161627 - R 83 -12 -3.74792 | opp_overlap 4161626 4161627 4161635 CACTATAGATGGAAA TGGCAAGAGCCGGC ACAAG GCCGGCTCTTGAGA CTTTGTGACTGGAAG TERM 3872 4161627 - 4161659 + r 73 -12 -2.94924 | opp_overlap 4161627, overlap 4161626 4161635 CACTATAGATGGAAA TGGCAAGAGCCGGC ACAAG GCCGGCTCTTGAGA CTTTGTGACTGGAAG RHE_CH03931 4162190 - 4161681 - | hypothetical protein TERM 3873 4162939 - 4162959 + G 82 -3.1 -5.24129 | opp_overlap 4162936 4162938, overlap 4162940 CTGCCGGAGGAACAG CGCGACATG CTG CGTGCCGCC TTTTTTCTCGGCCAA RHE_CH03932 4162525 - 4163085 + | ECF subfamily RNA polymerase sigma factor RHE_CH03933 4163492 - 4163100 - | hypothetical protein TERM 3874 4163240 - 4163229 - G 76 -7.2 -4.3739 | GACGTCGTCAGAAAA GCCG ATGA CGGC GAAAATATCCGGGAT phhB 4163879 - 4163574 - | pterin-4-alpha-carbinolamine dehydratase ligT 4164915 - 4164322 - | 2`-5` RNA ligase protein RHE_CH03935 4163915 - 4164415 + | tyrosine phosphatase protein tesA 4165517 - 4164984 - | acyl-CoA thioesterase protein RHE_CH03938 4165701 - 4166408 + | putative ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis) TERM 3875 4166463 - 4166479 + G 74 -5.7 -4.44277 | overlap 4166462 4166452 CGCTCCGTGAGCTGC GCGGCGG CAT TCGCGGC TTTTACATTTTCCTC TERM 3876 4166944 - 4166971 + G 83 -14.2 -3.53224 | gap 1, opp_overlap 4166940 CACCGTCAAGACCGA GCCGGACGCCCTC TCC GAGGGC-TTCGGC TTTGCGCCGCGCCTG RHE_CH03939 4166411 - 4168948 + | putative ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis) RHE_CH03940 4169130 - 4169858 + | hypothetical protein TERM 3877 4169895 - 4169880 - f 90 -11.8 -4.24204 | opp_overlap 4169880 CATTGAGATCGAAAA GGCGGC TTCG GCCGCC TTTTTTGTTGCGCCG TERM 3878 4169880 - 4169895 + F 100 -11.8 -5.4505 | opp_overlap 4169880 CATTGAGATCGAAAA GGCGGC TTCG GCCGCC TTTTTTGTTGCGCCG RHE_CH03941 4169965 - 4170522 + | putative phosphinothricin N-acetyltransferase (antibiotic resistance) protein RHE_CH03942 4170930 - 4170529 - | hypothetical protein TERM 3879 4171212 - 4171156 - R 74 -10.2 -3.54424 | gap 2, opp_overlap 4171203 4171204, overlap 4171157 4171198 CGCCAGCGCGCCAAA GGGCCCGGCGGAGCGTA-TC-GACCT TAACCCC AGCCCCGAATACGCTCGGCCGGGCCG CCCGGCATTTCACCC TERM 3880 4171211 - 4171157 - R 75 -13.7 -2.72511 | gap 2, opp_overlap 4171203 4171204, overlap 4171156 4171198 GCCAGCGCGCCAAAG GGCCCGGCGGAGCGTA-TC-GACCT TAACCCC AGCCCCGAATACGCTCGGCCGGGCC GCCCGGCATTTCACC TERM 3881 4171204 - 4171218 + r 74 -12.8 -2.73441 | opp_overlap 4171157 4171156 4171198, overlap 4171203 4171213 4171214 CCCCGAATACGCTCG GCCGGG CCG CCCGGC ATTTCACCCGTCATC RHE_CH03943 4171984 - 4171244 - | hypothetical protein TERM 3882 4171472 - 4171484 + g 71 -4.8 -4.48987 | GTTTTCGCCTTTTTC GACG TCGAT CGTC TTTTCCTTGTCGAAA TERM 3883 4172090 - 4172077 - R 72 -2.4 -4.99134 | overlap 4172084 AGTCCAAACGAAAAA TCAC GAAGGG GTGA GACCGCAGCTCGACC TERM 3884 4172191 - 4172166 - R 100 -16.9 -4.86731 | opp_overlap 4172165 4172164 TCGCCGCAAAGAAAA GCCGCCGGAAA CTGC TCTCCGGCGGC CATTATCAATCAACT acnA 4174907 - 4172217 - | aconitate hydratase ccmA 4175214 - 4175816 + | cytochrome c biogenesis protein CcmA TERM 3885 4175973 - 4176021 + G 84 -15.2 -3.34895 | overlap 4175960 4175959 TTGGCGGCCATTGCG GGCCGCGGTTTAGCCCCTCCCC CTTGT GGGGAGGGGTTGGGGCGGGGTC TTACTTGGGCCTCGA RHE_CH03946 4175816 - 4176055 + | hypothetical protein ccmB 4176052 - 4176711 + | heme ABC transporter, permease protein (involved in cytochrome-c biogenesis) ccmC 4176759 - 4177520 + | heme ABC transporter, permease protein (involved in cytochrome-c biogenesis) cycX 4177524 - 4177691 + | heme transporter protein (involved in cytochrome-c biogenesis) cycY 4177688 - 4178296 + | thiol disulfide interchange protein (involved in cytochrome-c biogenesis) RHE_CH03951 4179051 - 4178464 - | hypothetical protein ispZ 4179692 - 4179048 - | intracellular septation protein A ftsY 4181339 - 4179771 - | cell division protein RHE_CH03954 4182627 - 4181356 - | hypothetical protein TERM 3886 4181816 - 4181798 - G 71 -8.1 -3.90291 | gap 1, opp_overlap 4181810 ACGTCCTCAATGAAA CGCAGCGC ATCG GCGC-GCG AATGCCGGCGCTTCA dapF 4183529 - 4182624 - | diaminopimelate epimerase RHE_CH03956 4183845 - 4183642 - | hypothetical protein TERM 3887 4184148 - 4184178 + H 100 -11 -4.81851 | opp_overlap 4184151, overlap 4184149 AGATCCCGGAGGTCA ACACCCGACAGCGC GAT GCGCCCTCGGGTGC TTTTTGGCTTTGCGT TERM 3888 4184149 - 4184177 + H 85 -14.5 -3.48026 | opp_overlap 4184151, overlap 4184148 GATCCCGGAGGTCAA CACCCGACAGCGC GAT GCGCCCTCGGGTG CTTTTTGGCTTTGCG TERM 3889 4184175 - 4184151 - H 78 -13.5 -3.05844 | opp_overlap 4184149 4184148 TCCCGGAGGTCAACA CCCGACAGCGC GAT GCGCCCTCGGG TGCTTTTTGGCTTTG TERM 3890 4185230 - 4185212 - g 74 -13.1 -3.31461 | overlap 4185200 CATCGACGCCGAGAA GGCGGCC GCCAT GGCCGCC AAGATGGCCAAGGGC TERM 3891 4185499 - 4185467 - g 75 -12 -3.62046 | gap 1 GCATTCGCGCAAGAA GC-GCATCGCCGCCG GCTC CGGCACCGATGCCGC CGCCATCAACAAGCT ffh 4184268 - 4185845 + | signal recognition particle GTP-binding protein TERM 3892 4186076 - 4186030 - g 73 -13.1 -3.14132 | gap 1, opp_overlap 4186071, overlap 4186032 4186042 CCGGCGCGCGAGGAA TACCAGATCGAACGCCTTCGCC AGCT GGCGAAGGCCGCCAATCTGG-A TCCGGATTTCGCCGA TERM 3893 4186075 - 4186032 - g 91 -18.2 -3.13403 | opp_overlap 4186071, overlap 4186030 4186042 GGCGCGCGAGGAATA CCAGATCGAACGCCTTCGCC AGCT GGCGAAGGCCGCCAATCTGG ATCCGGATTTCGCCG TERM 3894 4186065 - 4186042 - g 70 -12.4 -3.16154 | overlap 4186032 4186030 GAATACCAGATCGAA CGCCTTCGCC AGCT GGCGAAGGCC GCCAATCTGGATCCG tyrA 4185862 - 4186182 + | chorismate mutase rpsP 4186231 - 4186599 + | 30S ribosomal protein S16 TERM 3895 4186621 - 4186646 + F 100 -20.5 -4.564 | opp_overlap 4186621 GCTTCCCCAATCGAA CGGGCGGCATG GCGA CATGCCGCCCG TTTTCATTTCCAATT TERM 3896 4186646 - 4186621 - f 100 -20.5 -3.17075 | opp_overlap 4186621 GCTTCCCCAATCGAA CGGGCGGCATG GCGA CATGCCGCCCG TTTTCATTTCCAATT rimM 4186629 - 4187282 + | 16S rRNA-processing protein trmD 4187321 - 4187983 + | tRNA (guanine-N(1)-)-methyltransferase TERM 3897 4188711 - 4188687 - g 83 -15.7 -3.17194 | overlap 4188661 4188673 AGCTGCGGAAGCCAA GGCCGCCGCTG AAG CAGCAGCAGCC GCTGAAACGGCAGCA rplS 4188196 - 4188732 + | 50S ribosomal protein L19 TERM 3898 4188756 - 4188783 + F 91 -12.8 -4.13561 | opp_overlap 4188761, overlap 4188761 AAAAATTCTGTTTCT GGAAAGGCGGTC TTCG GATCGCCTTTTC TCTTTTTTGCGCGCC TERM 3899 4188761 - 4188778 + F 91 -9.1 -5.06052 | opp_overlap 4188761, overlap 4188756 TTCTGTTTCTGGAAA GGCGGTC TTCG GATCGCC TTTTCTCTTTTTTGC RHE_CH03963 4188871 - 4189668 + | putative amino acid ABC transporter, substrate-binding protein TERM 3900 4189825 - 4189860 + G 73 -12.6 -3.21099 | gap 1, opp_overlap 4189824 CGAACCGTAGTGAAC GGCGTCG-GCGTCAC CGTGTTC GTGACGCTCGTCGCC TTCATGCTGGCAACG RHE_CH03964 4189684 - 4190502 + | putative amino acid ABC transporter, permease protein TERM 3901 4190688 - 4190703 + F 86 -6.1 -5.15117 | ATCGAATGACGGCCG GCGGA GCCTGA TCCGC TTTTTTCCGATTTTC TERM 3902 4191960 - 4191908 - g 74 -12.8 -3.33696 | gap 1 GGCCTCGTCAAGGAA CAGGCGGAAGCCGAAGGCCTCGA CAAGATCT TCAAGGCCGCCGGCTTC-GACTG GCGCGAGCCGGGCTG leuC 4190747 - 4192156 + | isopropylmalate isomerase large subunit TERM 3903 4192213 - 4192182 - T 74 -7.1 -4.40184 | opp_overlap 4192183, overlap 4192183 GGAATGAAAGATAAA GCCGTCCGATGCG TCTCAG CGCAACGGGCGGT TTCTATATTGGAGTG TERM 3904 4192212 - 4192183 - T 70 -10.6 -3.23026 | opp_overlap 4192183, overlap 4192182 GAATGAAAGATAAAG CCGTCCGATGCG TCTCAG CGCAACGGGCGG TTTCTATATTGGAGT TERM 3905 4192183 - 4192212 + T 95 -13.5 -4.21142 | opp_overlap 4192182 4192183 GAATGAAAGATAAAG CCGTCCGATGCGT CTCA GCGCAACGGGCGG TTTCTATATTGGAGT RHE_CH03966 4193168 - 4192263 - | aldo/keto reductase family oxidoreductase RHE_CH03967 4193746 - 4193225 - | hypothetical protein TERM 3906 4193838 - 4193826 - H 70 -5.5 -4.40894 | overlap 4193827 GAAATCATATGAAAA GCTGC GCG GCAAC AGCCCCGCCGGCCGA RHE_CH03968 4193915 - 4194598 + | putative two-component response regulator protein TERM 3907 4194679 - 4194700 + F 100 -11.6 -4.74801 | opp_overlap 4194654 AAGCGTTTCACGCTT TGCCTGGC AAAGAC GCCAGGCA TTTTTGCTGGAATTG RHE_CH03969 4194737 - 4195192 + | putative cAMP-dependent kinase protein TERM 3908 4195229 - 4195212 - T 73 -9.1 -3.89215 | CGTCAGAAATCGAAA TGCGCCG TTAC CGGCACA TGGTCCGACGGCCGG xthA3 4196002 - 4195199 - | exodeoxyribonuclease III protein TERM 3909 4196010 - 4196035 + r 78 -11.9 -3.53012 | opp_overlap 4195997 AAGCCCATGCGGCAA GCCCTTTCACG CTTT CATGAAAGGGC TTTAGAACAAAGGCG RHE_CH03971 4196773 - 4196105 - | putative outer membrane lipoproteins carrier protein ftsK2 4199597 - 4196913 - | cell division protein TERM 3910 4198700 - 4198664 - G 81 -13.5 -3.6682 | CGTCATCGATGGAAA GCGACGGCGCAGCGACG ACG CGCCGCGGCGAAGCCGC CCTTGCCGCCATTGA TERM 3911 4198737 - 4198760 + g 74 -11.6 -3.53012 | overlap 4198751 CATCGATGGCTCCAG GCGCTCGCCG CGGA CGGCCGGCGC TTTGGCGCGAACCGG TERM 3912 4198879 - 4198865 - G 71 -12.8 -3.04144 | GTCCCATGCCGAAGA GCCGGC GCA GCCGGC CCTGGCTCATGAACC TERM 3913 4199767 - 4199744 - R 100 -14.6 -5.86976 | CCAGAAAAGAAAAAA GCCCGAACCT TGGA AGGTCCGGGC CAAATGCGGCTTATG TERM 3914 4199805 - 4199838 + r 79 -10.2 -3.96148 | gap 1 AGGCCGCGACGGGCC GTGAAGCGGCGCCCG TCTGC CGGGCGCCGCAA-AC TTTATGATCAGGAGG amtB 4201273 - 4199846 - | ammonium transporter protein TERM 3915 4200330 - 4200348 + g 70 -10.2 -3.55444 | CCACCCAGCATCGAT GCCTTGCC ACG GGCCAGGC TTTCGACGATGCACC TERM 3916 4201190 - 4201149 - G 73 -11.5 -3.57144 | gap 1, opp_overlap 4201168 TTGTCCATGGTGAAA GCAGGAG-CAGCGGCAGCAG CGG CTGGCGCAGCGGTCTCCTGC GCAAAAGCGACGGCC glnK 4201639 - 4201301 - | nitrogen regulatory protein P-II tesB 4202746 - 4201862 - | acyl-CoA thioesterase II protein TERM 3917 4202981 - 4202956 - g 83 -7.5 -4.57569 | GCATGTCTGGAAAAA CGATGAGCGCG CTTC CGCCGTCATCG CTGCCGCCGCAAAGA TERM 3918 4203086 - 4203098 + G 71 -6.2 -4.28361 | TCCCGGACATCCGAT CCGG TCCGC CCGG TTTTCCTGACCTTCG TERM 3919 4203803 - 4203768 - g 95 -18.5 -3.53224 | gap 1, overlap 4203748 CAGCGCTCGCCGAAA CGATCGTCGAGGCCGA CCGCC TCGGCCTCGAC-ATCG GCTCGATAAACATCC RHE_CH03976 4202831 - 4204045 + | 2-octaprenyl-6-methoxyphenyl hydroxylase RHE_CH03977 4204249 - 4204061 - | hypothetical protein lonD 4204945 - 4204259 - | ATP-dependent protease LA 2 protein trxA2 4205994 - 4205020 - | thioredoxin protein RHE_CH03980 4206716 - 4206051 - | hypothetical protein RHE_CH03982 4207235 - 4206933 - | putative insertion sequence transposase protein RHE_CH03983 4207283 - 4207537 + | hypothetical protein RHE_CH03984 4208244 - 4207600 - | hypothetical protein galE3 4208473 - 4209456 + | UDP-glucose 4-epimerase protein TERM 3920 4209517 - 4209549 + G 83 -14.2 -3.48276 | gap 1, opp_overlap 4209515 CACCGCGGACCAATG GCGTGG-CGACTGCC TATC GGCGGTCGGTCACGC TTGTGTGAAAACACC TERM 3921 4210193 - 4210183 - g 73 -8.2 -4.07568 | TGCGCGTGCTGAAAA CCGC GAA GCGG AACAGGAAGCTCATC TERM 3922 4210991 - 4210969 - g 89 -12.6 -4.1899 | CGAGCTGACGGAAAA GGGGCCGGTG ACG CGCCGACCCC GGTAGGGCATTTCCG RHE_CH03986 4209434 - 4210996 + | sulfatase (sulfuric ester hydrolase) protein TERM 3923 4210996 - 4211031 + T 87 -12 -4.1673 | gap 1 GCGCCGACCCCGGTA GGGCATTTCCGTC-TTC TTC GAATGACGGCAATGCTC TTTATTGGGCAATTC RHE_CH03987 4211576 - 4211079 - | hypothetical protein TERM 3924 4211798 - 4211817 + H 70 -2.8 -4.70117 | opp_overlap 4211786 AATGGAATGAATATT CCGCAGAA CAGA TTTTACGG TTTGTTTGTTCCGTT mocBch2 4211943 - 4212872 + | rhizopine ABC transporter, substrate-binding protein TERM 3925 4212888 - 4212910 + F 91 -15.6 -3.5944 | opp_overlap 4212878 4212888 GGTAAGTGCCAAGCA GGATGCGGGT TCT GCCCGCATCC TTTCAGCCTGTCCGT TERM 3926 4212910 - 4212888 - f 81 -14.9 -2.73542 | opp_overlap 4212888, overlap 4212878 GGTAAGTGCCAAGCA GGATGCGGG TTCTG CCCGCATCC TTTCAGCCTGTCCGT TERM 3927 4213185 - 4213173 - g 74 -9.1 -3.87373 | TATACGCCCGACAAA GGCGA TAT TCGCC TCAAAGGGGTCGAGA RHE_CH03989 4212942 - 4214483 + | sugar ABC transporter, ATP-binding protein TERM 3928 4214586 - 4214569 - g 74 -14.1 -2.88579 | opp_overlap 4214562 GCAACCCGGCAGAGA CGGCGGC GTAT GCCGCCG GAACTCAGCATCTTC RHE_CH03990 4214518 - 4215543 + | sugar ABC transporter, permease protein TERM 3929 4215571 - 4215588 + F 91 -14.1 -3.84451 | CGAACCGATTATTTG CGGGGGC TTCG GCCCCCG TTTCCATTTGCGGCG TERM 3930 4215653 - 4215639 - f 86 -5.7 -5.02476 | opp_overlap 4215641 4215643, overlap 4215643 AGATTTTTTAAAAAA GGGAT GGCGA ATCCC GCCAGCTTTTCTATT TERM 3931 4215641 - 4215659 + F 78 -5.9 -4.73682 | opp_overlap 4215639 4215643, overlap 4215643 ATTTTTTAAAAAAGG GATGGCG AATCC CGCCAGC TTTTCTATTCTGCCA RHE_CH03991 4215711 - 4216769 + | putative membrane dipeptidase protein dppAch3 4216868 - 4218511 + | dipeptide ABC transporter, substrate-binding protein TERM 3932 4218556 - 4218586 + G 70 -10.3 -3.54935 | gap 1, opp_overlap 4218546 4218549 4218551, overlap 4218552 4218562 4218574 CGAAACCACACGGGA GGCG-CGGCCCCGC AAGG GCCGTGCCGGCGCC TTTGCGAAGGCTTTG dppBch3 4218530 - 4219597 + | dipeptide ABC transporter, permease protein dppCch3 4219624 - 4220529 + | dipeptide ABC transporter, permease protein dppDch3 4220526 - 4221359 + | dipeptide ABC transporter, ATP-binding protein dppFch3 4221356 - 4222105 + | dipeptide ABC transporter, ATP-binding protein TERM 3933 4223322 - 4223361 + G 84 -10.8 -4.15044 | gap 1, overlap 4223327 GCGAGGCAGTCGCCG TCAACGGCGTCGACAAGCT GCC GGCTT-TCGCCGCCTTTGA TTTCTTCGCGCGCCA TERM 3934 4223327 - 4223356 + G 79 -9.3 -4.21141 | gap 1, overlap 4223322 GCAGTCGCCGTCAAC GGCGTCGACAAGCT GCC GGCTT-TCGCCGCC TTTGATTTCTTCGCG TERM 3935 4226738 - 4226716 - g 77 -13.4 -3.28712 | opp_overlap 4226712, overlap 4226695 CGTCGGCTTCCAGAA CGCGCTTGCC GCT GTCAAGCGCG AGCATGAATTCGCCT TERM 3936 4228466 - 4228492 + G 75 -13.6 -3.05384 | opp_overlap 4228453, overlap 4228482 4228483 AAGTTCATCGGCCGT GGCCGCAGCCTC GCC GATGCGGCGGCC TTCGATCCGGGCGCC TERM 3937 4229846 - 4229860 + G 73 -7 -4.38927 | CTCGGCAATAATCCC GGACGC ACG GCGCCC TTTATTCTGTCCAGA TERM 3938 4230834 - 4230811 - g 76 -13.8 -3.17688 | GAACGACGGCATGAA CCGCGTCGGC ATCG GCGGACGCGG CACCAGCGTATGGCT ndvB 4223237 - 4231714 + | beta-1,2-glucan production associated transmembrane protein TERM 3939 4231745 - 4231785 + F 100 -17 -3.55444 | gap 1, opp_overlap 4231737 4231740 4231739, overlap 4231746 TGAAGAACACGGCGA TTCG-CGACGGCCAAAAGG GAAC CCTTTTGGCCGTCGTCGCG TTTGCAAAATCGGAA TERM 3940 4231746 - 4231784 + F 88 -18.3 -2.73124 | gap 1, opp_overlap 4231737 4231740 4231739, overlap 4231745 GAAGAACACGGCGAT TCG-CGACGGCCAAAAGG GAAC CCTTTTGGCCGTCGTCGC GTTTGCAAAATCGGA RHE_CH03998 4231817 - 4233055 + | putative protein require for succinylation of osmoregulated periplasmic glucans RHE_CH03999 4233536 - 4233183 - | lactoylglutathione lyase protein TERM 3941 4233760 - 4233787 + r 95 -17 -3.46602 | opp_overlap 4233760 CCTGGAAAAACAAAA GGCCGGAAGAGC ACCT GCCCTTCCGGCC TTATCCTGTAACCCG TERM 3942 4233787 - 4233760 - R 100 -19.2 -5.26119 | opp_overlap 4233760 CCTGGAAAAACAAAA GGCCGGAAGAGC ACCT GCCCTTCCGGCC TTATCCTGTAACCCG ndvA 4235590 - 4233809 - | cyclic beta-1,2-glucan ABC transporter TERM 3943 4236132 - 4236099 - g 76 -7.4 -4.26344 | gap 1, overlap 4236121 ACATTTGCAGCAAAA CCCGGCGCAGCAG AATATCGAA CTGC-GCGCCGCG CCGCTTGCCGGCCGC RHE_CH04001 4235959 - 4236714 + | LuxR family transcriptional regulator pyc 4236888 - 4240352 + | pyruvate carboxylase TERM 3944 4240347 - 4240385 + F 74 -11.7 -3.32963 | opp_overlap 4240358 CTGGCGGTTTACGGC GGATGAGCGAACGGCAC GAAAG GTTTCGTTCGCCCGTCC TTGTCAGGTCGCGCT TERM 3945 4240460 - 4240487 + F 100 -16.3 -4.74801 | TTCGAAAGGTTAGCG GCCTCCTCGCC TTGCCC GGCGGGGAGGC TTTTTCGTAGACTTG RHE_CH04003 4240541 - 4241113 + | putative reductase protein TERM 3946 4241168 - 4241135 - T 93 -12.5 -4.19735 | opp_overlap 4241130 4241125, overlap 4241136 TGGCTTAAAATCAAA GCGTCTCACGTGAAT CACG ATTCACGTGAGGCGA TTCAGATGTCGTATG TERM 3947 4241167 - 4241136 - T 85 -16 -3.11359 | opp_overlap 4241130 4241125, overlap 4241135 GGCTTAAAATCAAAG CGTCTCACGTGAAT CACG ATTCACGTGAGGCG ATTCAGATGTCGTAT RHE_CH04004 4241802 - 4241170 - | amino acid ABC transporter ATP-binding protein TERM 3948 4241232 - 4241264 + g 71 -10.7 -3.53444 | overlap 4241239 TGGTACGCTCGCGCT CGGGC-GCGCTGAAA ATAGC TTTC-GCGCTGCCCG TTTCCACCACGGTCC TERM 3949 4241564 - 4241577 + g 76 -9.5 -4.05446 | GTCAGCAGTTCCATG GCGCG CTCG CGCGC TTTCTCCTTCGGCCA RHE_CH04005 4242587 - 4241928 - | amino acid ABC transporter permease TERM 3950 4242784 - 4242762 - R 100 -13.4 -4.78839 | AAGCGGACAACAAAA CCCCTCCCCA TTG TGCGGAGGGG TTGGGAGGGGACTTT RHE_CH04006 4243581 - 4242808 - | amino acid ABC transporter substrate-binding protein TERM 3951 4242933 - 4242949 + g 71 -5.8 -4.30576 | TCTTGCGGATGATGA TGCCGG AGTAA TCGGCA TTTTCCTGCTCGGCG RHE_CH04007 4243913 - 4244623 + | DeoR family transcriptional regulator RHE_CH04008 4244773 - 4245882 + | putative transporter, permease protein TERM 3952 4246543 - 4246561 + G 70 -12.4 -3.14564 | overlap 4246537 GCGATTGTCCAGTCG GCGCTGCT TTC GGCAGCGC TTGCTGAGGAAATCG ispG 4245979 - 4247229 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 3953 4248191 - 4248169 - g 71 -12.7 -3.05384 | opp_overlap 4248170 CGGCGCGGCACTCAA CGCCGCGCT GCGGG AGCACGGCG TCCTCGTCCGGCATT hisCch3 4247246 - 4248307 + | histidinol-phosphate aminotransferase ispA 4249311 - 4248316 - | geranyltranstransferase protein TERM 3954 4249420 - 4249395 - H 70 -11.1 -2.90797 | opp_overlap 4249395, overlap 4249390 CGGAGACAGAGGATA TCGCCGACATG CCGG CCCGTCGGCGA TGGTTCGAAAATCGG mtgA 4249403 - 4250104 + | monofunctional biosynthetic peptidoglycan transglycosylase RHE_CH04013 4250200 - 4250922 + | hypothetical protein RHE_CH04014 4250937 - 4251584 + | glutathione S-transferase protein rpmF 4251739 - 4251924 + | 50S ribosomal protein L32 TERM 3955 4251960 - 4251978 + F 93 -13.1 -4.35524 | GATCGCAAGTTTCAA GGCCGGC TTCAC GCCGGCC TTTTGCATTTAGCCA RHE_CH04016 4252067 - 4252474 + | hypothetical protein aniA 4253044 - 4252469 - | carbon flux regulator protein phbAch 4253282 - 4254463 + | acetyl-CoA acetyltransferase phbB 4254535 - 4255260 + | acetoacetyl-CoA reductase protein TERM 3956 4255285 - 4255314 + G 100 -20.9 -5.27335 | opp_overlap 4255290 AACGTTTGTCGATTC GCAAAGGCGCGTT GCAG AACGCGCCTTTGC TTTTTGTTTGGGAGG TERM 3957 4255309 - 4255290 - g 81 -13.6 -3.57144 | opp_overlap 4255285 TTGTCGATTCGCAAA GGCGCGTT GCAG AACGCGCC TTTGCTTTTTGTTTG RHE_CH04020 4255267 - 4255419 + | hypothetical protein TERM 3958 4255645 - 4255628 - T 100 -14.1 -5.27335 | overlap 4255640 GCCGGCAAAGAAAAA CGGGCGC AAAA GCGCCCG TTGGGAGTCCGATAT RHE_CH04021 4255930 - 4255670 - | hypothetical protein TERM 3959 4256315 - 4256332 + H 70 -9.9 -3.47011 | overlap 4256319 GGGAAGGTCGCAATG TCGTCGA TTCG TCGACGA TTCGTTCCGTTTTTG TERM 3960 4256717 - 4256707 - H 76 -6.8 -4.63932 | overlap 4256708 4256709 4256716 TAGCCGTGAACAAAA GCTG AAT CAGC AGGAGTCAGCGATTC TERM 3961 4256720 - 4256743 + H 70 -11.8 -2.59668 | opp_overlap 4256708 4256709 4256716, overlap 4256723 AAGCTGAATCAGCAG GAGTCAGCGA TTCG TCGCTGATTC GTTCTCAGGCTGTTC TERM 3962 4256723 - 4256740 + H 70 -9.9 -3.44622 | opp_overlap 4256708 4256709 4256716, overlap 4256720 CTGAATCAGCAGGAG TCAGCGA TTCG TCGCTGA TTCGTTCTCAGGCTG TERM 3963 4257123 - 4257164 + G 81 -10.1 -4.2349 | gap 1, opp_overlap 4257116 TTGCAGAACGTGGCG CTGGTCA-CGGGCGAAGAAA AGA TTTCGCCGCCCGATGCCCGG TTTTCCGTCTGCACG TERM 3964 4258733 - 4258747 + G 76 -11.4 -3.77196 | CCGCGATCACGTCGC CGCTCG TAT CGAGCG TTTCGTCAATCATCA TERM 3965 4259474 - 4259463 - g 75 -3.6 -4.8543 | overlap 4259452 GAAGCGGCAGAAAAA GCCG ATCA CGAC GATGCCGACGGAGCG TERM 3966 4259637 - 4259661 + G 76 -6.4 -4.41548 | TCCGGGGAAGCTGGC GAGCCGGC GGAACCAAA GCCGGTTC TTTTGTGGCGTCTCG mgpS 4256943 - 4260101 + | ATP-dependent DNA helicase protein RHE_CH04023 4260104 - 4260508 + | putative heat shock protein (ribosome-associated) fdxA 4260700 - 4261038 + | ferredoxin III protein TERM 3967 4261929 - 4261911 - g 70 -10.2 -3.57883 | overlap 4261903 4261912 ACAAGATGTCGGAAA CCGAGGCG GTC CGCCTCGT CGAGACCAATCTCAA TERM 3968 4261928 - 4261912 - g 72 -13.7 -2.74248 | overlap 4261903 4261911 CAAGATGTCGGAAAC CGAGGCG GTC CGCCTCG TCGAGACCAATCTCA RHE_CH04025 4261433 - 4262005 + | CarD family transcriptional regulator TERM 3969 4262019 - 4262061 + F 78 -13 -3.34716 | gap 1, opp_overlap 4262031, overlap 4262031 AACGCGACCTTCTTT TTCCTA-AAAAAACCCGGC CATCGA GCCGGGTTTTTTATTGGAA CTTTTTCCGCGCTGG TERM 3970 4262031 - 4262048 + F 100 -9.8 -5.45652 | opp_overlap 4262031, overlap 4262019 TTTTTCCTAAAAAAA CCCGGC CATCGA GCCGGG TTTTTTATTGGAACT TERM 3971 4262048 - 4262031 - f 100 -10.5 -5.40072 | opp_overlap 4262031 4262019 TTTTTCCTAAAAAAA CCCGGCC ATCG AGCCGGG TTTTTTATTGGAACT TERM 3972 4262281 - 4262248 - f 76 -13.9 -2.8751 | gap 1, opp_overlap 4262248, overlap 4262245 ACATGATGAGAATTA GGGCCTCTCCC-TGAA AAG TCCAGGGGCGAGGCCC TTTTGCATTCAGAAC TERM 3973 4262248 - 4262281 + F 95 -13.9 -4.27316 | gap 1, opp_overlap 4262248 4262245 ACATGATGAGAATTA GGGCCTC-TCCCTGAA AAG TCCAGGGGCGAGGCCC TTTTGCATTCAGAAC TERM 3974 4263136 - 4263108 - g 90 -18.1 -3.01712 | opp_overlap 4263100 4263099, overlap 4263083 4263080 4263126 GCGCCTGGCGGAAGA CGGCGCCACGCTC GAA GAGCTCGGCGCCG ATCTCGGCATTTCCA rpoH2 4262380 - 4263243 + | RNA polymerase factor sigma-32 TERM 3975 4263273 - 4263290 + T 100 -14.1 -5.4505 | CAGCAGCACTGCCTG GCCCGGC GCAA GCCGGGC TTTTTTATTCGGCGA RHE_CH04027 4264836 - 4263295 - | putative metalloprotease protein TERM 3976 4264242 - 4264198 - G 74 -12.7 -3.28712 | opp_overlap 4264209 4264231, overlap 4264199 CTGCTGGCGGGAGAA GGCGGCAAGCCTGAGCTTGCC CCG GGCAAGCGCCTGCTTGCCCGC GATGTCGCTCGAGAG TERM 3977 4264242 - 4264199 - G 80 -16 -2.57132 | gap 1, opp_overlap 4264209 4264231, overlap 4264198 TGCTGGCGGGAGAAG GCG-GCAAGCCTGAGCTTGCC CCG GGCAAGCGCCTGCTTGCCCGC GATGTCGCTCGAGAG TERM 3978 4264768 - 4264743 - G 74 -13.9 -2.83396 | overlap 4264738 4264740 4264757 CTGAAAGTAACACCA GGCGACGCGCC AAAC GGCGCGCCGCG GAGATGGCATCACTG RHE_CH04028 4266761 - 4265229 - | putative transporter, permease protein TERM 3979 4266790 - 4266808 + H 71 -8.2 -3.91897 | GGGTTCGATCTGTTT TATGTGCT GTC AGCACGTA TTTGTCAATGACACA TERM 3980 4266953 - 4266935 - H 74 -7.3 -4.30576 | opp_overlap 4266942 GCCGGACGACGAAAA CCTGCCG CGCAT CGGCCGG AGTATGGCCCGCATG RHE_CH04029 4266966 - 4267403 + | MarR family transcriptional regulator RHE_CH04030 4267476 - 4268126 + | hypothetical protein RHE_CH04031 4268130 - 4269950 + | putative ABC transporter, ATP-binding protein TERM 3981 4270063 - 4270019 - T 71 -9.1 -3.76402 | gap 1 AGGGGACGTATTAAA GCGCCGGAG-CGGTGACGGC GGCGGT GCCGACACTGGCACTGGCGC CGGTCTGGGCGACCT RHE_CH04032 4271870 - 4270014 - | ABC transporter permease/ATP-binding protein TERM 3982 4272107 - 4272074 - H 84 -5.1 -5.05782 | opp_overlap 4272075 4272097, overlap 4272075 AGCCACGTTAAAAAA GTCGCTAAAGGGCCG CGTG CGGACCGGTAGCGAT TTTTTCGCCACCGGT TERM 3983 4272075 - 4272106 + H 89 -8.6 -5.00616 | opp_overlap 4272074 4272075, overlap 4272097 GCCACGTTAAAAAAG TCGCTAAAGGGCCG CGTG CGGACCGGTAGCGA TTTTTTCGCCACCGG TERM 3984 4272097 - 4272121 + H 100 -11.4 -5.83211 | opp_overlap 4272075 4272074, overlap 4272075 AGGGCCGCGTGCGGA CCGGTAGCGA TTTTT TCGCCACCGG TTTTTTATTTTGATC metA 4272216 - 4273073 + | homoserine O-succinyltransferase galM 4273192 - 4274214 + | aldose-1-epimerase protein TERM 3985 4274257 - 4274280 + F 100 -12.4 -5.56673 | TTTGACCGCTATGAG CCCTCTTCGG ATTG CCGGGGAGGG TTTTTTCTTCTGCAT RHE_CH04035 4274317 - 4275123 + | GntR family transcriptional regulator glmS2 4275116 - 4276147 + | glucosamine--fructose-6-phosphate aminotransferase protein TERM 3986 4276548 - 4276503 - g 81 -3.7 -5.07652 | gap 1, overlap 4276504 4276505 GGCTGTAAAAGAAAA CCGCGGC-GTCGCCGGCCTGCA TCT CGAAGGCCCGCACCTGGCGCCG GCCCGCAAGGGCGCG nagA 4276147 - 4277298 + | n-acetylglucosamine-6-phosphate deacetylase protein TERM 3987 4277944 - 4277958 + G 82 -11.4 -4.03234 | opp_overlap 4277946 CGGAGCTTTCCAAGT CAGGCG ATG CGCCTG TTTATCTCAGCGCCA RHE_CH04038 4277316 - 4278044 + | hypothetical protein RHE_CH04039 4278495 - 4278067 - | hypothetical protein TERM 3988 4278595 - 4278619 + r 75 -12.7 -3.15699 | overlap 4278593 AGGCTGCTTCGACTT CGGAACCGCCG AGA CGGCGGCCCCG TATTCATGCATGCGT efp 4279239 - 4278670 - | elongation factor P TERM 3989 4279459 - 4279492 + G 72 -3.8 -4.56597 | overlap 4279461 4279481 4279482 CCGCCCGTTCCTGAT CGGGCGCAATGC GATTCAGGCG GCATTGCGCGGG TTTTTCGCGCGCGAG genX 4279388 - 4280449 + | lysyl-tRNA synthetase protein TERM 3990 4281043 - 4281017 - g 89 -11.5 -4.38712 | overlap 4281021 TCGATCCCGAGAAAA TCGACGCGGCG CTCAT CGCCGCGCTGA AGGCGAGCGGTAAGA kamA 4280446 - 4281495 + | L-lysine 2,3-aminomutase protein RHE_CH04043 4281761 - 4282012 + | acyl carrier protein TERM 3991 4282622 - 4282595 - g 86 -6.9 -5.02476 | overlap 4282610 ATACGCTCGAAAAAA CGCATGCCTGG AATACG CTCGGCATGCG CGGCACTTGTTCCGA acd2 4282012 - 4283193 + | acyl-CoA dehydrogenase protein RHE_CH04045 4283198 - 4284106 + | hypothetical protein TERM 3992 4284254 - 4284238 - g 75 -13.7 -3.02461 | opp_overlap 4284229 4284244 GAAGTGCTGGCAACA TCGGGCG CCG CGCCCGA GGCGATGCTGGGTTT TERM 3993 4284702 - 4284716 + G 91 -9.2 -4.56914 | opp_overlap 4284669 TCTGCGCGCGACCGC GCGGCG GCT TGCCGC TTTTCATTTCACTAG RHE_CH04046 4284115 - 4285077 + | hypothetical protein TERM 3994 4285292 - 4285262 - g 72 -4 -4.57569 | gap 1, overlap 4285263 4285264 GCAGCGCTTGAAAAA GC-CGGGCTCTTC GACCGG GAAAATCCCGAGC CGCTAAATATGAAGG manB3 4285094 - 4287574 + | beta-mannosidase protein RHE_CH04048 4287616 - 4288794 + | putative glycosyltransferase protein TERM 3995 4289375 - 4289399 + G 79 -11.4 -3.89346 | gap 1, opp_overlap 4289371 4289369, overlap 4289377 4289383 TCCATCATACAGCTT GC-CGGCGTCG CCGC CGGCGCCGTGC TTTATGGCGTCGAGG TERM 3996 4289377 - 4289396 + G 71 -12.8 -3.01918 | opp_overlap 4289371 4289369, overlap 4289375 4289383 CATCATACAGCTTGC CGGCGTCG CCGC CGGCGCCG TGCTTTATGGCGTCG TERM 3997 4289383 - 4289417 + G 74 -12 -3.45033 | opp_overlap 4289371 4289369, overlap 4289377 4289375 4289407 ACAGCTTGCCGGCGT CGCCGCCGGCGCCGTG CTT TATGGCGTCGAGGGCG TTCTCGTCGGTTATG TERM 3998 4289441 - 4289452 + G 76 -5.8 -4.57073 | GGTTATGCGCTCGGA CAGC TCGT GCTG TTTTTCGCCACACTG TERM 3999 4291476 - 4291455 - g 87 -17.3 -2.90212 | opp_overlap 4291450 4291438 GGACGACGGTAGACA TGGCGCGCG AACT CGCGCGCCA CGGCGTCGTGTCGCT RHE_CH04049 4288931 - 4292194 + | hypothetical protein aceC 4293395 - 4292217 - | cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein RHE_CH04051 4293773 - 4293537 - | putative transcriptional regulator protein RHE_CH04052 4294750 - 4293842 - | LysR family transcriptional regulator TERM 4000 4294403 - 4294391 - G 76 -10.5 -3.85817 | ATTGGCGCCGAGAAA GCGCC CCA GGCGC GGCGCCAGCCAGCGC TERM 4001 4294482 - 4294516 + g 72 -12.2 -3.34715 | gap 1, overlap 4294480 4294483 TTGGCGCGCAGGTTC AGCGAGGCGCT-CGA GATGCG TCGCAGCGCCTCGCG TATTTCGCGGGCATA TERM 4002 4294483 - 4294515 + g 77 -15.7 -2.60615 | gap 1, overlap 4294482 4294480 TGGCGCGCAGGTTCA GCGAGGCGCT-CGA GATGCG TCGCAGCGCCTCGC GTATTTCGCGGGCAT RHE_CH04053 4294854 - 4296266 + | hypothetical protein TERM 4003 4296396 - 4296372 - g 82 -11.3 -4.07568 | overlap 4296375 CGGCCTCTGGGAAAA GACCGCCGGCG AAC CGCCGGTGACC TCGCCTCTCCAAGGC RHE_CH04054 4296334 - 4297617 + | oxidoreductase protein TERM 4004 4298372 - 4298418 + G 73 -8.6 -4.07687 | gap 1, overlap 4298373 CTCGTTTCCGCCACC GGCT-CGACGGCCATGGGCCG CGCCGT CGGCCCGCGCCTGTCGCAGCG TTTTGCCCGCGCCAT TERM 4005 4299091 - 4299056 - g 83 -7.4 -4.56597 | opp_overlap 4299088, overlap 4299060 4299061 TTCGGCGGCGAAAAA GAGACCGGCGGCGGAC GCGA GTCCGGCTCCGATGCC TGGAAGGCCTATATG RHE_CH04055 4297643 - 4299181 + | aldehyde dehydrogenase TERM 4006 4299230 - 4299188 - f 83 -9.1 -4.56133 | opp_overlap 4299198, overlap 4299198 GTCGAATAAGCAAAA TTGCTGGAAAGGCGACGCT GGCAG AGCGTCGCCTTTTTGGCAT CGAGATTTATTCCCC TERM 4007 4299198 - 4299220 + F 100 -14.9 -4.62069 | opp_overlap 4299198 4299188 CAAAATTGCTGGAAA GGCGACGCT GGCAG AGCGTCGCC TTTTTGGCATCGAGA TERM 4008 4299220 - 4299198 - f 90 -14.9 -3.57309 | opp_overlap 4299198, overlap 4299188 CAAAATTGCTGGAAA GGCGACGCT GGCAG AGCGTCGCC TTTTTGGCATCGAGA TERM 4009 4299843 - 4299892 + G 75 -14.9 -2.78463 | gap 1 GATCTCGCCGATCCC GCCTGGAAG-GGCCGCTGGGGTGC AGC GCCCGCCGGCGCCGACTTCCAGGC TATCGTCGCCGCCCT sfuA 4299369 - 4300391 + | iron(III) ABC transporter, substrate-binding protein TERM 4010 4300501 - 4300537 + G 100 -11.8 -4.61231 | gap 2, overlap 4300506 CCTTAGGGCATGACG GGATCGGGCAACTGTCTT TCC AAGACGGTTGCCC--TCC TTTTTCAGCGTATGA TERM 4011 4300506 - 4300534 + G 91 -18.3 -3.24422 | overlap 4300501 GGGCATGACGGGATC GGGCAACTGTCTT TCC AAGACGGTTGCCC TCCTTTTTCAGCGTA TERM 4012 4300910 - 4300941 + G 70 -12.3 -3.14683 | gap 1 CCAGGCTCTGGGCCT GGCTGGCGATCGCG CCCCT CGCGGT-GCCGGCC TTCGTGCACAGCTAT TERM 4013 4301302 - 4301326 + G 73 -7 -4.3534 | overlap 4301298 GCCTCCAACATGCTC GGCGGCGTGC TCGTT GCCTGCTGCC TTTTCCTGCTTGGCC sfuB 4300495 - 4302162 + | iron(III) ABC transporter, permease protein TERM 4014 4302542 - 4302564 + G 86 -15.6 -3.54424 | GCTCGACCGCGGCAT GCTGGTGCGG CGC CCGCATCAGC TTTCCGGCGGTCAGC sfuC 4302159 - 4303196 + | iron(III) ABC transporter, ATP-binding protein RHE_CH04059 4304563 - 4303232 - | hypothetical protein TERM 4015 4304449 - 4304412 - G 73 -6.3 -4.25074 | overlap 4304413 4304416 GAGGAAAGGGCAAAA CCGA-CGGCCGCGATGC TTGCCG GCA-CGCCGCCGATCGA GGTATCGGCCACCAG RHE_CH04060 4306409 - 4304967 - | hypothetical protein TERM 4016 4307025 - 4307042 + H 72 -10.5 -3.53012 | TCCGCCCCTTGCCCA CCTCGCG CTCG CGCGGGG TTTCACCGGCAGACC rplU 4307166 - 4307483 + | 50S ribosomal protein L21 rpmA 4307518 - 4307787 + | 50S ribosomal protein L27 TERM 4017 4307831 - 4307806 - f 95 -11.2 -4.58395 | gap 1 GGTAGCGCTCAAAAA CAGCCGGCGTC TCATC GAC-CCGGCTG GCCGTACCAGGTTCA TERM 4018 4307852 - 4307888 + F 100 -17.6 -3.85698 | gap 1, opp_overlap 4307857 4307859, overlap 4307859 ACCAGGTTCAGTCCA GAAAACAGGGGAGATGG GGCG CCATCTCCCCT-TTTTC TTTGTCCAAACAGGA TERM 4019 4307884 - 4307857 - f 100 -14.2 -4.4009 | opp_overlap 4307852 4307859, overlap 4307859 GTTCAGTCCAGAAAA CAGGGGAGATGG GGCG CCATCTCCCCTT TTTCTTTGTCCAAAC TERM 4020 4307882 - 4307859 - f 100 -16.8 -3.80877 | opp_overlap 4307852 4307859, overlap 4307857 TCAGTCCAGAAAACA GGGGAGATGG GGCG CCATCTCCCC TTTTTCTTTGTCCAA TERM 4021 4307859 - 4307882 + F 100 -16.8 -5.38054 | opp_overlap 4307859 4307857, overlap 4307852 TCAGTCCAGAAAACA GGGGAGATGG GGCG CCATCTCCCC TTTTTCTTTGTCCAA RHE_CH04064 4307913 - 4308569 + | putative acetyltransferase protein RHE_CH04065 4308566 - 4309153 + | putative acetyltransferase protein TERM 4022 4309253 - 4309211 - T 81 -10.4 -4.10161 | opp_overlap 4309221, overlap 4309218 4309221 CATGATCTTCTAAAA GTCGAAAGGAGACGCCGCCG GCT CGGCGGCGTCTTCGTCAATC GCCGATCTCGATCCA TERM 4023 4309246 - 4309218 - T 100 -20.3 -3.76413 | opp_overlap 4309221, overlap 4309211 4309221 TTCTAAAAGTCGAAA GGAGACGCCGCCG GCT CGGCGGCGTCTTC GTCAATCGCCGATCT TERM 4024 4309221 - 4309243 + T 100 -20.6 -3.18264 | opp_overlap 4309218 4309211 4309221 TAAAAGTCGAAAGGA GACGCCGCCG GCT CGGCGGCGTC TTCGTCAATCGCCGA TERM 4025 4309243 - 4309221 - T 100 -20.6 -2.96941 | opp_overlap 4309221, overlap 4309218 4309211 TAAAAGTCGAAAGGA GACGCCGCCG GCT CGGCGGCGTC TTCGTCAATCGCCGA RHE_CH04066 4309967 - 4309248 - | putative endonuclease/exonuclease/phosphatase protein TERM 4026 4309865 - 4309855 - G 79 -8.2 -4.27316 | TTGCCGAACTGAAAA CGCG TGC CGCG CACCGGCTGCAGGCC TERM 4027 4310643 - 4310593 - g 76 -8.3 -4.13945 | gap 2 ACGCCCATTTCAAAA CCTCGGTCAACCAGGCGCCGGATTG GGC CAATCCCG-GCCTGCCCGGC-GAGG AAAAAACCATCTGGC TERM 4028 4311089 - 4311074 - g 86 -5.4 -5.13741 | CGAACTGAAGAAAAA GACCAA GGAA TTGGCC AAGGCCTGCGGCAGG obgE 4310199 - 4311290 + | GTPase ObgE proB 4311277 - 4312446 + | gamma-glutamyl kinase proA 4312439 - 4313722 + | gamma-glutamyl phosphate reductase nadD 4313781 - 4314359 + | nicotinic acid mononucleotide adenylyltransferase TERM 4029 4314391 - 4314418 + F 77 -12 -3.32844 | opp_overlap 4314384 4314391 4314409 CCCGGAAACGAGAAA GCCCGACGGG GGAGGAGA TCCGTCGGGC TTATAAACTCGACCG TERM 4030 4314418 - 4314391 - f 86 -11.3 -4.13654 | opp_overlap 4314391, overlap 4314384 4314409 CCCGGAAACGAGAAA GCCCGACGG GGGAGGAGAT CCGTCGGGC TTATAAACTCGACCG modA 4314798 - 4315589 + | molybdenum ABC transporter, substrate-binding protein modB 4315825 - 4316556 + | molybdate ABC transporter permease protein TERM 4031 4316622 - 4316636 + G 85 -5.6 -5.02074 | overlap 4316623 GCCTTCACCTCCGAA GGCGGT GTA ACCGCA TTTTTTGGGCGCTCC modC 4316553 - 4317620 + | molybdenum ABC transporter, ATP-binding protein modE 4317998 - 4317621 - | molybdenum-binding transcriptional regulator-repressor protein (molybdenum transport associatedprotein) TERM 4032 4317875 - 4317830 - G 82 -14.8 -3.29144 | gap 2 TCATCTCGCTGACAA GCAGCCAGGCTCGGCGATAGGA CATG TCC-ATCGCCC-GCCCGGCCGC CGAGATCGACCCCGT RHE_CH04075 4318202 - 4318651 + | hypothetical protein RHE_CH04076 4318768 - 4319250 + | SPOUT methyltransferase superfamily protein TERM 4033 4320372 - 4320362 - g 74 -2.4 -4.82901 | CGTGCCCGATAAAAA CCGC ATT GCGC CCGCATATCCCTTCG TERM 4034 4320665 - 4320634 - g 70 -11.6 -3.18849 | overlap 4320632 TGGATACGATCAATA CCCGCCAGGGAAAA TTCG TTTTCGCCGGCGAG CCGCTCGCCGTGATG RHE_CH04077 4319430 - 4320830 + | putative metalloendopeptidase protein TERM 4035 4321290 - 4321280 - g 77 -2.4 -5.00884 | overlap 4321266 ACGCCGTCGAAAAAA TGCG CGG CGCC GTCAATACCCCGATC ctpA 4320874 - 4322142 + | C-terminal processing peptidase protein TERM 4036 4322150 - 4322182 + F 79 -9.8 -4.1043 | gap 1, opp_overlap 4322147, overlap 4322151 CCAAGTAATCGATCA TTG-CAAGGCCGGGC ACTC GCCCGGCCTTGACCC TTTCTGCTGTTTCCC TERM 4037 4322151 - 4322181 + F 78 -13.3 -3.05535 | gap 1, opp_overlap 4322147, overlap 4322150 CAAGTAATCGATCAT TG-CAAGGCCGGGC ACTC GCCCGGCCTTGACC CTTTCTGCTGTTTCC TERM 4038 4322310 - 4322262 - f 75 -8.7 -4.19238 | gap 2, opp_overlap 4322260 4322258 4322262 GGCGCAACCGCAAAA CCGGCAGC-CGGCGGCCG-GGAG TGCTG CGCCTCGGCCGCATCGCCGCCAG TCTGTGTCTTTTTGC TERM 4039 4322405 - 4322384 - g 86 -5 -5.15969 | overlap 4322402 4322403 CTCGAACGCAAAAAA CCGCCGGC AACCGA GCAAGCGG CAGCGCCCTCGTCGA TERM 4040 4323262 - 4323248 - g 85 -5.7 -5.03314 | overlap 4323250 GCCATCCTGAAAAAA CTCGA CGAGC TCGAG CGTGTCGCTCGCAAG TERM 4041 4323282 - 4323306 + G 82 -10.8 -4.07687 | gap 1, opp_overlap 4323281 4323280 TCGCTCGCAAGAACG GCC-AGGCGAT CGGC ATCGCCTCGGC TTTTGACGAAAGCGT RHE_CH04079 4322282 - 4323415 + | hypothetical protein ialA 4323441 - 4323974 + | dinucleoside polyphosphate hydrolase TERM 4042 4324019 - 4323981 - T 74 -11.9 -3.17206 | gap 2, opp_overlap 4323979 4324017, overlap 4323979 4323984 GAAGACTGATCAAGA GGA-CG-ATGCAGGCCG CGTCAAC CGGCCTGCATCCGATCC GAATTATTCGGCTTC TERM 4043 4324014 - 4323984 - T 74 -12.6 -2.77999 | opp_overlap 4323979, overlap 4323979 4323981 GACTGATCAAGAGGA CGATGCAGGCCG CGTCAAC CGGCCTGCATCC GATCCGAATTATTCG bfr 4324532 - 4324023 - | bacterioferritin protein RHE_CH04082 4324803 - 4324474 - | hypothetical protein dnaEch2 4328419 - 4324967 - | DNA polymerase III alpha subunit protein RHE_CH04084 4330032 - 4328419 - | putative nucleotidyltransferase protein RHE_CH04085 4330822 - 4329878 - | hypothetical protein TERM 4044 4330720 - 4330750 + gH 70 -11.7 -2.94597 | overlap 4330723 CTTCCGCCAAGGCTT CCTGCTCCGCCGC CGCAA GCGCCGGCGCGGG CTTTCCTTCCAGCTT TERM 4045 4330723 - 4330751 + gH 79 -10.2 -3.91798 | gap 1, overlap 4330720 CCGCCAAGGCTTCCT GCTC-CGCCGCCG CAAG CGCCGGCGCGGGC TTTCCTTCCAGCTTG TERM 4046 4330805 - 4330792 - GH 72 -3.7 -4.62069 | opp_overlap 4330798 4330802 CGCGGAGCGCAAAAA GCCGC TCGC GCGCC AGGGCGTTCTGCGCC TERM 4047 4330802 - 4330826 + gH 88 -13.5 -3.74872 | opp_overlap 4330792, overlap 4330798 AAAAAGCCGCTCGCG CGCCAGGGCGT TCT GCGCCATGGCG TTTACTCCGATCCGT RHE_CH04086 4330986 - 4331423 + | hypothetical protein RHE_CH04087 4331652 - 4331446 - | hypothetical protein citEch 4332557 - 4331652 - | citrate lyase, beta subunit protein RHE_CH04089 4332670 - 4332903 + | hypothetical protein RHE_CH04090 4333010 - 4333429 + | hypothetical protein TERM 4048 4333444 - 4333476 + F 100 -16.3 -4.10007 | gap 1, opp_overlap 4333462 AGAGACGCATTCCAT GGGCGGGCCGCGCG AAACGC CGCGTGGCC-GCCC TTTTGGAAAGATTCT leuD 4333563 - 4334171 + | isopropylmalate isomerase small subunit TERM 4049 4334214 - 4334197 - T 81 -14.1 -3.18383 | opp_overlap 4334197 ATTGCGATTGATCAA GCCGGGC TTTC GCCCGGC TTTTTCTCTGACATC TERM 4050 4334197 - 4334214 + T 100 -14.1 -4.9792 | opp_overlap 4334197 ATTGCGATTGATCAA GCCGGGC TTTC GCCCGGC TTTTTCTCTGACATC RHE_CH04092 4335166 - 4334234 - | putative L-serine dehydratase protein leuB 4335410 - 4336522 + | 3-isopropylmalate dehydrogenase TERM 4051 4336546 - 4336572 + F 100 -13.7 -4.8048 | opp_overlap 4336543 4336542 ACGTGAAACAATGCC GCCCTCCGCGT CACGC GTGCGGAGGGC TTTTTCATGTGAGGC RHE_CH04094 4336751 - 4337449 + | putative phosphatase protein TERM 4052 4337433 - 4337459 + T 100 -12.2 -4.72486 | opp_overlap 4337434, overlap 4337434 TCCCCGACATCGAAA AGCCCGGCGC CTTGTGA GCGCCGGGCC TTTTTCGAGTTTCTC TERM 4053 4337458 - 4337434 - T 100 -16.4 -4.2349 | opp_overlap 4337433 4337434 CCCCGACATCGAAAA GCCCGGCGCC TTGTG AGCGCCGGGC CTTTTTCGAGTTTCT TERM 4054 4337434 - 4337458 + T 90 -15.7 -3.42407 | opp_overlap 4337434, overlap 4337433 CCCCGACATCGAAAA GCCCGGCGC CTTGTGA GCGCCGGGC CTTTTTCGAGTTTCT RHE_CH04095 4339377 - 4337491 - | putative transporter, permease protein TERM 4055 4339337 - 4339287 - G 79 -9.6 -4.16279 | opp_overlap 4339306 4339326, overlap 4339274 CATACCATTCGAAAA CGGTACCGAGCGAAGAGGCGAAGA TGA CCTTCTTCTCCTCGCCCGTCATCG GACCGGCCTTCGTGC RHE_CH04096 4340890 - 4339619 - | hypothetical protein RHE_CH04097 4341579 - 4340887 - | putative ABC transporter, ATP-binding protein RHE_CH04098 4342046 - 4341585 - | hypothetical protein TERM 4056 4342089 - 4342067 - R 100 -16.3 -4.49556 | CCTCCAGGAAACAAA TCCCGGCCG GTGAA CGGCCGGGA CCATGATCGACGAAA TERM 4057 4342133 - 4342105 - R 100 -20.4 -3.77196 | opp_overlap 4342099 4342097 4342093 4342112 CCATGATCGACGAAA GACGCAAGGCCG GCAAG CGGCCTTGCGTC TAGAGATCAGTTCGT phoA 4343894 - 4342140 - | alkaline phosphatase protein TERM 4058 4342453 - 4342494 + g 71 -5.7 -4.37527 | gap 1, opp_overlap 4342454, overlap 4342454 TTGGCACTGAGGAAT AGGCGGCGGCTGACGTCGAC CTT GTCGG-GATAACCGTCGCCA TTTTCATCCTTGTAG TERM 4059 4343102 - 4343118 + g 81 -7.9 -4.41494 | overlap 4343103 TCACCTCGAGCAGCA TGCCGAC TAT GTCGGCC TTTTCGTTGCGGCTG asd 4344306 - 4345340 + | aspartate-semialdehyde dehydrogenase TERM 4060 4345389 - 4345369 - f 81 -12.5 -3.66803 | opp_overlap 4345369 CCGTAAGATGTTAAA GCCCTGCTC GTG GAGCGGGGC TTTTTCCGGGGCAAA TERM 4061 4345369 - 4345389 + F 100 -14.7 -4.56597 | opp_overlap 4345369 CCGTAAGATGTTAAA GCCCTGCTC GTG GAGCGGGGC TTTTTCCGGGGCAAA RHE_CH04101 4345511 - 4346335 + | putative membrane-bound lytic murein transglycosylase protein TERM 4062 4346367 - 4346385 + T 86 -8.8 -4.8048 | opp_overlap 4346367 ATACCGAGCTGGAAA CGCCGC TGCGAAT GCGGCG TTTTTCATATGCGGG RHE_CH04102 4348009 - 4346390 - | putative cellulose biosynthesis transcriptional regulator protein cynT 4348741 - 4348100 - | carbonic anhydrase protein TERM 4063 4348418 - 4348379 - G 84 -15.1 -3.28791 | gap 2, overlap 4348366 ATCGCCGGGCGATAA CGGCTCGGCATTCGGGTCG AGTG CGGCCCGAATGCC--GCCG CAGCGGCCATGGCCC TERM 4064 4349037 - 4349018 - g 73 -7 -4.34402 | GGCGCGACAGGAAAA CGGCGGCC AGCA GGTCACCG AGACCATTCGGCGGA pdxK 4348800 - 4349675 + | pyridoxal kinase protein TERM 4065 4349884 - 4349870 - f 74 -2.8 -5.00616 | opp_overlap 4349882, overlap 4349882 TCCGTTGGCAAAAAA GCATCA AAA CAATGC CTGAGGCCTCTCTTT TERM 4066 4349893 - 4349905 + F 79 -4.1 -5.0133 | overlap 4349904 ACAATGCCTGAGGCC TCTCT TTT AGGGA TTTTTTCGAGAAATC TERM 4067 4350353 - 4350343 - g 76 -8.2 -4.18018 | CCTCGTCATGGAAAA GGGC AAA GCCC CCGCGCTCTATTCCG TERM 4068 4350794 - 4350808 + G 80 -5.6 -4.77036 | overlap 4350777 4350776 GAGATCCTCGCCTTC CTCGAG GGT CCCGAG TTTTTGATCGTCACC TERM 4069 4351765 - 4351745 - g 70 -7.5 -4.06502 | GACGGCGAAACCAAA CTCGTCGTG CTG CACGACATG GAGCTCGAGACCCGC TERM 4070 4352506 - 4352488 - g 86 -8.1 -4.62069 | overlap 4352468 CTTCTACCCGAAAAA GCTGCCG GTGGG CGGCAAC CGCGACGAGATCTTC TERM 4071 4354368 - 4354413 + G 76 -8.1 -4.20817 | gap 1, opp_overlap 4354365, overlap 4354369 TGCCGGAGATCATGC AGATCG-CCGAGCGCACCGGCG AGC CGCTGGTGCGTGCGGCCGAAAA TTATTTTGCGGTGTC TERM 4072 4354369 - 4354412 + G 70 -11.6 -3.11767 | gap 1, opp_overlap 4354365, overlap 4354368 GCCGGAGATCATGCA GATCG-CCGAGCGCACCGGCG AGC CGCTGGTGCGTGCGGCCGAAA ATTATTTTGCGGTGT RHE_CH04105 4349966 - 4354741 + | putative NAD-specific glutamate dehydrogenase protein TERM 4073 4354986 - 4354953 - g 70 -11.7 -3.15861 | opp_overlap 4354955 GACGACGTGGAGCAA CATGGCGACGATCTC CTCG GTGATCATCGCCCTG CTCTCACCGGTGCTC TERM 4074 4355142 - 4355157 + G 78 -6.8 -4.61147 | CTTCATGATCCTCGC CTCGGT TTCA GCCGAG TTTTCTATCGTCTTC TERM 4075 4355595 - 4355620 + G 71 -12.5 -3.05844 | overlap 4355584 CAACGGCCTGCTGAT TCTCGGCGGCG TCTT CGCCGCCGGCA TGTTCGGCTGGGCGA TERM 4076 4356001 - 4356031 + G 71 -4.7 -4.43844 | gap 2, overlap 4356001 4356003 ATCTACGCGCTTTCC G-GGCG-CGCCACGA GCT TCATGGCGACGCTGC TTTTCTCGCTGGTGA RHE_CH04106 4354765 - 4356153 + | hypothetical protein purH 4357782 - 4356166 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4077 4356596 - 4356635 + g 72 -7.2 -4.11216 | opp_overlap 4356596 4356618 4356621 AGATCCTCGACCATA CCGTTGTC-GCGGCTCTG GACAAG CAG-GCCGCCGGAAACGG TTTTCGCCGTCAGCC RHE_CH04108 4359631 - 4357988 - | hypothetical protein TERM 4078 4359722 - 4359702 - R 89 -11.1 -4.21314 | opp_overlap 4359700 4359711 AAGAATAGGTGAAAA GCGGCCGAT TTC ATCGCCCGC AATGAATTAATTCGT RHE_CH04109 4361256 - 4359862 - | RNA methyltransferase - sun protein TERM 4079 4360695 - 4360705 + g 73 -8.2 -4.08767 | CCAGCGCTGCGTCGC GGCC ATA GGCC TTTTCCAGCCGTGCA htpX2 4362209 - 4361253 - | heat shock protein HtpX TERM 4080 4362467 - 4362442 - g 81 -4.5 -5.02074 | overlap 4362448 4362449 GGAGCGGCGAAAAAA CCAGAAGCCGC TGGA GCTGCCGCCGG AGATCGGCGGCCGCG RHE_CH04111 4362320 - 4362544 + | hypothetical protein TERM 4081 4362700 - 4362667 - T 77 -11.8 -3.22475 | gap 1, opp_overlap 4362668 4362687, overlap 4362665 4362669 4362670 4362672 GCCACGGCCAGAAGA GAT-GAGCCGCTCCG GTACT CGGAGCGGCTCGATA TGTCAGGCCGTCGCC TERM 4082 4362668 - 4362698 + T 81 -15.4 -2.87564 | opp_overlap 4362667 4362665 4362669 4362670 4362672, overlap 4362687 CCACGGCCAGAAGAG ATGAGCCGCTCCGG TAC TCGGAGCGGCTCGA TATGTCAGGCCGTCG TERM 4083 4362697 - 4362669 - T 85 -16 -3.17622 | opp_overlap 4362668 4362687, overlap 4362667 4362665 4362670 4362672 CACGGCCAGAAGAGA TGAGCCGCTCCG GTACT CGGAGCGGCTCG ATATGTCAGGCCGTC TERM 4084 4362696 - 4362670 - T 95 -19.5 -2.50252 | opp_overlap 4362668 4362687, overlap 4362669 4362667 4362665 4362672 ACGGCCAGAAGAGAT GAGCCGCTCCG GTACT CGGAGCGGCTC GATATGTCAGGCCGT TERM 4085 4362694 - 4362672 - T 86 -16.3 -2.78526 | opp_overlap 4362668 4362687, overlap 4362670 4362669 4362667 4362665 GGCCAGAAGAGATGA GCCGCTCCG GTACT CGGAGCGGC TCGATATGTCAGGCC acsA2 4364658 - 4362703 - | acetyl-CoA synthetase TERM 4086 4362908 - 4362944 + g 85 -15.9 -3.39895 | GGGCCGATCTCGGCG CGCACATGCTTCACCAG TTC CTGGCGAAGCGTGTCCG TTCCTTCGTGGCCGG TERM 4087 4364578 - 4364593 + g 71 -4.7 -4.50058 | CTCGACGCTTTCCTC GTACC ATTTCA GGTAC TTTTCCTTATCGATG RHE_CH04113 4364887 - 4365588 + | hypothetical protein TERM 4088 4365645 - 4365609 - T 89 -17.3 -3.16881 | opp_overlap 4365614, overlap 4365614 CAGCGACCTCATGAA GAAAACCACGCCGAGCG AAC CGCCCGGCGGGGTTTTT TGATGGAGGATCGCC TERM 4089 4365640 - 4365614 - T 100 -17.2 -4.71828 | opp_overlap 4365614, overlap 4365609 ACCTCATGAAGAAAA CCACGCCGAGCG AAC CGCCCGGCGGGG TTTTTTGATGGAGGA TERM 4090 4365614 - 4365640 + T 100 -15 -5.14563 | opp_overlap 4365614 4365609 ACCTCATGAAGAAAA CCACGCCGAGCG AAC CGCCCGGCGGGG TTTTTTGATGGAGGA RHE_CH04114 4367765 - 4365855 - | propionate-CoA ligase protein RHE_CH04115 4368507 - 4367848 - | hypothetical protein TERM 4091 4368995 - 4368976 - g 83 -12.1 -4.07885 | CATGCCGGCGGAAAA CGCCGCG ATGGAG CGCGGCG TGCACCCCGCGTCCT TERM 4092 4369931 - 4369953 + G 71 -12.7 -3.05816 | opp_overlap 4369929 GAAGCCTTCAATATT GTCGCCGAC CGGCT GTCGGCGGC TTCCCTCGGCAATGC leuS 4368710 - 4371340 + | leucyl-tRNA synthetase TERM 4093 4371374 - 4371386 + G 76 -6.9 -4.42806 | overlap 4371375 CATCGCCATGATCCT TGCCG CTT CGGCG TTTCTTTCGGCCTGC RHE_CH04117 4371366 - 4371839 + | hypothetical protein TERM 4094 4372228 - 4372216 - g 78 -3.3 -5.0538 | overlap 4372220 GGCGATCTGAAAAAA GGATC CCT GCTCC GCAAGACGGCGGAAG holA 4371850 - 4372890 + | DNA polymerase III subunit delta parB 4373772 - 4372891 - | chromosome partitioning protein B parA2 4374599 - 4373805 - | chromosome partitioning protein A gidB 4375236 - 4374619 - | glucose-inhibited division protein B TERM 4095 4374924 - 4374945 + g 91 -6.5 -5.38249 | overlap 4374928 CATTCGTCTCCCGCA GCGCCGTTC GCAA GAACGCTGC TTTTTTATGGTTGCT gidA2 4377137 - 4375239 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4096 4376534 - 4376545 + g 70 -7.2 -4.07568 | overlap 4376530 TGCCATCCAGCCGGG CCGG CGTT CCGG TTTTCAACCGCCCCA TERM 4097 4376857 - 4376877 + g 86 -8.1 -4.66833 | TCTGCCTGGGTCCGT GGGCCCCGC ACG GCCGCGCCC TTTTTGCGGTTCAGC trmE 4378584 - 4377208 - | tRNA modification GTPase TrmE TERM 4098 4378342 - 4378330 - G 81 -2.6 -5.14563 | CGGGCCAGGAAAAAA CAGC ACCAA GCCG TTGTCGATGGGTTCG TERM 4099 4378603 - 4378574 - G 100 -15.1 -5.27335 | gap 1 TCCCTCAAACAAAAA GCTGGCG-ACATCG AGA CGATGCGCGCCAGC CCTCACAAGCAGAAT rho 4379895 - 4378630 - | transcription termination factor Rho TERM 4100 4379578 - 4379609 + g 78 -10 -4.07568 | CTCGCCTTCCTTCGG CCCGCGAATCGGTC CTTC GACCGTGTCGCCGG TTTTCAGCGAGAAAC RHE_CH04125 4380634 - 4380098 - | hypothetical protein hemE 4381608 - 4380637 - | uroporphyrinogen decarboxylase SEQUENCE gi|86359705|ref|NC_007762.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence (length 194229) TERM 1 1017 - 993 - g 76 -5.7 -4.67256 | opp_overlap 993 992, overlap 1016 CAACAAATCACAAAA TCCTACTCG ATTGTTA CGAGAAGGA ATTCTGCCAGATCGC RHE_PA00001 302 - 1258 + | hypothetical protein intA 2589 - 1339 - | site-specific integrase protein TERM 2 3732 - 3743 + G 72 -7.2 -4.20354 | overlap 3736 AAATCGAGTTTCAAG GCGG CGAA CCGC TTTTGCGATTGGATT TERM 3 4666 - 4655 - g 91 -5.8 -5.31275 | overlap 4656 4657 TCGGATGACAAAAAA GCTC ACAA GAGC CTTGCGGCATGGGCC RHE_PA00003 3320 - 4726 + | hypothetical protein TERM 4 5737 - 5751 + G 82 -2.8 -5.11613 | overlap 5713 5710 GAGTGTACGTTGCGC TCTACT TGT GGTGGA TTTTTTGAATGGTAT RHE_PA00004 4723 - 5805 + | hypothetical protein RHE_PA00005 5802 - 6455 + | hypothetical protein TERM 5 7100 - 7115 + G 78 -5.4 -4.72272 | gap 1, opp_overlap 7100 7104, overlap 7100 7101 CTCGACAGCATTGAA C-GGAGC CGC GCTCCAG TTTTTCCTGGAAACA RHE_PA00006 6480 - 7640 + | hypothetical protein RHE_PA00007 9556 - 7634 - | hypothetical protein RHE_PA00008 10781 - 10044 - | IS21 family insertion sequence ATP-binding protein RHE_PA00009 12319 - 10793 - | IS21/IS408/IS1162 insertion sequence transposase protein TERM 6 12676 - 12654 - R 73 -8.5 -4.07568 | gap 1, opp_overlap 12648 12654 TGCGGTCGCCCAAAA GCCT-CGATG GAAA CATCGGAGGC TTTTTGAGTTTTTAG TERM 7 12654 - 12676 + r 89 -8.5 -4.92239 | gap 1, opp_overlap 12654, overlap 12648 TGCGGTCGCCCAAAA GCCT-CGATG GAAA CATCGGAGGC TTTTTGAGTTTTTAG RHE_PA00010 13572 - 12688 - | hypothetical protein RHE_PA00011 15201 - 14215 - | putative peptidase protein (caspase-1 like protein) RHE_PA00012 15708 - 15202 - | hypothetical protein RHE_PA00013 15893 - 16207 + | hypothetical protein RHE_PA00014 17837 - 16293 - | hypothetical protein TERM 8 16835 - 16821 - G 70 -10 -3.58726 | GTTCGGTATATACAA GCATGC AAG GCATGC CATCTCCCCCTCAAA RHE_PA00015 18479 - 17841 - | hypothetical protein RHE_PA00016 18943 - 18326 - | hypothetical protein RHE_PA00017 19245 - 18940 - | hypothetical protein RHE_PA00018 21338 - 19620 - | hypothetical protein TERM 9 20012 - 20022 + g 76 -6.8 -4.45945 | overlap 19999 TGTCGGCGACCACGT TCCC GCC GGGA TTTTCCTTGATGAAT RHE_PA00019 22275 - 22105 - | putative nucleotidyltransferase protein xylBa 23771 - 22281 - | xylulokinase protein RHE_PA00021 25016 - 23982 - | AsnC/GntR family transcriptional regulator protein TERM 10 24999 - 25046 + g 78 -6.4 -4.66537 | overlap 25001 25026 AGGTGCGTGTCTTTT GTCAATCTTTGTTGTCATGTGT ATTG ACAAATGGCAATCAAGGTTGTC TTTTGTCTTCCCAAC TERM 11 26020 - 26056 + G 76 -13.7 -3.1552 | overlap 26018 CATGGCCAGCAGGTC GGCGTTGCGACCCTCTC GAT GGCAAGGTTGCAACGCC TATTCCTCGATAGCG RHE_PA00022 25123 - 26454 + | putative glycerol 1-phosphate dehydrogenase protein (L-arabinose utilization protein) protein TERM 12 26495 - 26509 + G 78 -4.9 -4.7373 | overlap 26494 26496 CGAAAGATGTCGCTG GCGCG GTTCG CGTGC TTTTTGCTGACATCG RHE_PA00023 26458 - 27228 + | putative hydrolase protein TERM 13 27610 - 27582 - g 78 -6.6 -4.65219 | ACAATAGAAAAAGAA GGGAATGGGCCT GGAGG AGGCCTGCTCCC GGCAAACGAGAAATT RHE_PA00024 27294 - 28223 + | hypothetical protein RHE_PA00025 28292 - 29026 + | short chain dehydrogenase/reductase family oxidoreductase RHE_PA00026 29288 - 30145 + | sugar ABC transporter, ATP-binding protein TERM 14 31761 - 31771 + G 73 -8.2 -4.07687 | ATCCTGATTTCCAAT GCCG GAG CGGC TTTTCAGGGCAAGCT RHE_PA00027 30219 - 32267 + | short chain dehydrogenase TERM 15 32477 - 32509 + G 76 -8.4 -4.1899 | gap 1, opp_overlap 32473 32476 32475 ACCGGCTCAAACAGT GGGGTGGCATCCATC CCGA GCTGGACGC-ACCCC TTTTCGATGCCGTGC TERM 16 33021 - 33008 - g 72 -2.3 -4.74103 | opp_overlap 33011, overlap 33009 CGGGCAATCCAAAAA CCCCA CCGC TGGTG TGTTCAATCAGGCAA RHE_PA00028 32475 - 33188 + | putative glycerol-3-phosphate dehydrogenase (NAD(P)+) protein RHE_PA00029 33945 - 33640 - | putative glycerol-3-phosphate dehydrogenase protein RHE_PA00030 34835 - 34023 - | hypothetical protein TERM 17 34390 - 34376 - G 77 -2.1 -5.0065 | gap 1 GATCGACAAACAAAA GCGACC AGTG GGT-GC CCCCCGCGCCAGTCC RHE_PA00031 35274 - 34930 - | hypothetical protein TERM 18 35177 - 35193 + g 70 -12.3 -3.18735 | opp_overlap 35173 ACATCGGAATACGCA CCAAGCC TTT GGCTTGG TTGATGGCCTGTTGC RHE_PA00032 35793 - 35392 - | hypothetical protein repAa2 35961 - 37169 + | plasmid partitioning protein RepAa2 repBa2 37169 - 37837 + | plasmid partitioning protein RepBa2 TERM 19 38258 - 38231 - f 95 -10.6 -4.84529 | opp_overlap 38231 CGAGAAATGGAAAAA GGGCCTATCGAC TGCA ATCGACAGACCC TTCAATCACGGCCAA TERM 20 38354 - 38366 + F 90 -5.5 -5.47399 | opp_overlap 38344, overlap 38344 ATCAAGTCGCTGTAA CTGTC AGG GACGG TTTTTTTGCGCTTAG TERM 21 39268 - 39252 - g 84 -13.7 -3.80511 | opp_overlap 39245 ACAAATTAGCAAGAA CGACCGC TCC GCGGTCG AAATGGCTTTTAAAA repCa2 38449 - 39711 + | plasmid replication protein RepCa2 RHE_PA00036 40433 - 40651 + | hypothetical protein RHE_PA00037 40754 - 41293 + | hypothetical protein RHE_PA00038 41293 - 43377 + | insertion sequence transposase protein TERM 22 43643 - 43629 - gf 71 -5.6 -4.34267 | overlap 43632 GCAGACAATGCAAAA GCATCG ATG CGAAGC TTCAAGGATCTTGTT RHE_PA00039 43331 - 43837 + | putative insertion sequence transposase protein virF1 43910 - 44521 + | virulence VirF1 protein TERM 23 44656 - 44607 - Tf 95 -13 -4.65263 | opp_overlap 44615, overlap 44609 44610 ATGCGTTAAAACAAA GAGCTAAAGCGCGTCGCATGAA TCAAGT TTGACGCGACGCGCTTTAGTTG CAAACATTCCAATTG TERM 24 44654 - 44609 - Tf 100 -15.6 -3.93868 | opp_overlap 44615, overlap 44607 44610 GCGTTAAAACAAAGA GCTAAAGCGCGTCGCATGAA TCAAGT TTGACGCGACGCGCTTTAGT TGCAAACATTCCAAT TERM 25 44653 - 44610 - Tf 95 -19.1 -2.95598 | opp_overlap 44615, overlap 44609 44607 CGTTAAAACAAAGAG CTAAAGCGCGTCGCATGAA TCAAGT TTGACGCGACGCGCTTTAG TTGCAAACATTCCAA TERM 26 44615 - 44648 + TF 83 -11 -3.90291 | opp_overlap 44610 44609 44607 AAACAAAGAGCTAAA GCGCGTCGCATGAA TCAAGT TTGACGCGACGCGC TTTAGTTGCAAACAT RHE_PA00041 45252 - 44866 - | hypothetical protein TERM 27 45043 - 45025 - Gf 81 -3.8 -5.04385 | opp_overlap 45028 CAGACGCGCAAAAAA TACTCCTG CGA CCGGAATA TTCTTCGGCATGCGG TERM 28 45770 - 45760 - gH 71 -6.8 -4.22652 | overlap 45762 45763 TGACAGGATCCAAAA CACC CGC GGTG CAGATGAAGCCACGT TERM 29 46305 - 46344 + GH 76 -5.7 -4.56775 | gap 1, overlap 46306 AGTCGAATGAACGGG C-GTCGGTGTTTCGCGTC ATGCC GACGCGCAAGACTGGCTG TTTTTCGCGGGAAAT TERM 30 46306 - 46342 + GH 74 -9.4 -3.90048 | overlap 46305 GTCGAATGAACGGGC GTCGGTGTTTCGCGTC ATGCC GACGCGCAAGACTGGC TGTTTTTCGCGGGAA TERM 31 47482 - 47462 - gH 71 -7.5 -4.05026 | TCGAAAGGCAAACAA GCCGATCTG ATT CTGATCGAC TACTCGTCCCTTCCC TERM 32 47560 - 47608 + GH 74 -9 -3.85698 | opp_overlap 47562 47563, overlap 47563 47564 CATCGTCATTGGAGA AAGTGGC-CTGAACATGTCTTCCC TGG GGGACGACATGTTGAGCGCC-CTG TTTCTGCCGAAGCCC TERM 33 47606 - 47562 - gH 83 -11.6 -3.89346 | opp_overlap 47560 47563 47564, overlap 47563 TCGTCATTGGAGAAA GTGGC-CTGAACATGTCTTCCC TGG GGGACGACATGTTGAGCGCC-C TGTTTCTGCCGAAGC TERM 34 47606 - 47563 - gH 73 -11.8 -2.93393 | gap 1, opp_overlap 47560 47563 47564, overlap 47562 CGTCATTGGAGAAAG TGGC-CTGAACATGTCTTCCC TGG GGGACGACATGTTGAGCGCCC TGTTTCTGCCGAAGC TERM 35 47563 - 47606 + GH 78 -11.8 -3.51934 | gap 1, opp_overlap 47562 47563, overlap 47560 47564 CGTCATTGGAGAAAG TGGC-CTGAACATGTCTTCCC TGG GGGACGACATGTTGAGCGCCC TGTTTCTGCCGAAGC TERM 36 47564 - 47605 + GH 80 -15.3 -2.70946 | gap 1, opp_overlap 47562 47563, overlap 47563 47560 GTCATTGGAGAAAGT GGC-CTGAACATGTCTTCCC TGG GGGACGACATGTTGAGCGCC CTGTTTCTGCCGAAG virA 45179 - 47689 + | two-component sensor histidine kinase VirA protein TERM 37 47753 - 47720 - fH 70 -9.5 -3.53091 | overlap 47721 AGCTGTGTCTCCAAA GGGCGGGCTCTCAAT GCCT ATTGTGAGCCGGCCG CGCGCTTCATATGAC TERM 38 47752 - 47721 - fH 73 -13 -2.71712 | overlap 47720 GCTGTGTCTCCAAAG GGCGGGCTCTCAAT GCCT ATTGTGAGCCGGCC GCGCGCTTCATATGA TERM 39 47945 - 47963 + G 70 -10.2 -3.6543 | overlap 47943 CTGGGTGTGCCCGCC GAGCGACG CGG CGCCGCTC TCTTTTGACGAGTTC virB1a 47889 - 48626 + | transport secretion system IV, VirB1 protein virB3a 48766 - 49092 + | transport secretion system IV, VirB3 protein TERM 40 49328 - 49375 + G 74 -2.5 -4.83169 | overlap 49342 49356 ATATGCTCACCTAGT GCGTCACGACGATGTGTCGCC AGCACC GGCGCGACATTTTCGCAGCGC TTTTTCTGCCAGCCT TERM 41 49881 - 49895 + G 76 -6.4 -4.45544 | CTCGATTTTCCGATT GTTCTG ACG CAGAGC TTTTCATTCCTGACC virB4a 49092 - 51461 + | transport secretion system IV, VirB4 protein TERM 42 51724 - 51699 - g 85 -6.1 -4.98857 | gap 1 ACTCAACCAGAAAAA CCAGTATCCCGC CAC GAGGGAC-CTGG ATACCGAAATGTTCT virB5a 51478 - 52140 + | transport secretion system IV, VirB5 protein virB6a 52239 - 53126 + | transport secretion system IV, VirB6 protein virB7a 53156 - 53323 + | transport secretion system IV, VirB7 protein virB8a 53250 - 54023 + | transport secretion system IV, VirB8 protein virB9a 54020 - 54901 + | transport secretion system IV, VirB9 protein TERM 43 55079 - 55062 - g 74 -9.1 -3.88232 | CGGGCGACAGAAGAA GGCGGAT GCAA ACCCGCC ACCGTCTCCCATGAT virB10a 54898 - 56001 + | transport secretion system IV, VirB10 protein virB11a 56042 - 57076 + | transport secretion system IV, VirB11 protein TERM 44 57411 - 57399 - g 75 -4.1 -4.71828 | ACGCTAGCAACAAAA TCAGA CGT TCCGA TCATAATCATCAGCG virG 57174 - 57914 + | two-component response regulator VirG protein virC2 58613 - 57996 - | virulence VirC2 protein virC1 59311 - 58616 - | virulence VirC1 protein TERM 45 59659 - 59635 - H 83 -14.9 -3.09581 | overlap 59624 CAAACGGCCAAGAGA CGCCCGGCGCG GCC CGCTCCAGGCG GCTTGAACGACAAAT RHE_PA00056 60204 - 60947 + | IS4 insertion sequence transposase protein RHE_PA00058 62583 - 63113 + | putative insertion sequence transposase protein RHE_PA00059 63800 - 63312 - | insertion sequence transposase protein TERM 46 64379 - 64358 - g 72 -2.1 -4.6971 | overlap 64359 TAAATGCGAATAAAA CCAGGCCCG TCTC CTTGCCTGA GGAGCCGCGAGAAAT virE1 64327 - 64524 + | virulence VirE1 protein virE2 64528 - 66195 + | virulence VirE2 protein TERM 47 67965 - 67981 + G 79 -8.7 -4.2558 | opp_overlap 67959 67976 CACAACCGAGATGTT GCTGCAT CAA ATGCGGC TTTTGATCCGCAGTC virE3 66261 - 68216 + | virulence VirE3 protein RHE_PA00064 69477 - 69088 - | hypothetical protein TERM 48 69647 - 69669 + H 78 -14.2 -2.50016 | overlap 69646 69645 CCGTCATCGCCGATA CTCCTTCCGA TGG TCGGAAGGGG ATGTTGGTGATCAAG RHE_PA00066 70031 - 71173 + | IS21/IS1162 family insertion sequence ATP-binding protein virD1 71659 - 72105 + | T-DNA border endonuclease, VirD1 protein TERM 49 73223 - 73261 + G 70 -8 -4.07568 | opp_overlap 73223 TGTCGTTGAATGACA CCGCCCGTAGCGGATCGG CGA CTGATTCACTGCCTGCGG TTTTCGAAAGCCAGC virD2 72133 - 73377 + | T-DNA border endonuclease, VirD2 protein TERM 50 73642 - 73589 - f 91 -14.6 -3.70863 | gap 3, overlap 73590 CACATATCAGGGAAA TGCC-GGCGAGTACTGCTGCCGGCCTC ATC GAGGCCG-CTGCGG-ACTCGCCTGGCG CATTCGAAGCGACTG TERM 51 73641 - 73590 - f 88 -18.1 -2.82036 | gap 3, overlap 73589 ACATATCAGGGAAAT GCC-GGCGAGTACTGCTGCCGGCCTC ATC GAGGCCG-CTGCGG-ACTCGCCTGGC GCATTCGAAGCGACT TERM 52 73892 - 73859 - f 74 -10.9 -3.59262 | gap 1, overlap 73841 CCGTACAGCGGCAAA GCG-CGCTCGGCAGTC TCT GCCAGCCGAGCAACGC CCATCCGAAGCGAGT TERM 53 75035 - 75016 - f 81 -3.4 -5.20216 | overlap 75017 CAGACCACGAAAAAA CGTCGGGC ACGC ACCCGCCA GGTTTCATGATACCG TERM 54 76253 - 76292 + G 72 -7.8 -4.2349 | CGGTCTCAATCTTTG GGCTGATCCGCTGGTC AAGGCAGC GACCAGCCGATCCGAC TTTTCCATCTACGAC TERM 55 76314 - 76329 + G 95 -10.4 -4.43283 | ATCTACGACCTGCGT CGCAGG AAGA CCTGCG TTTATCTTTGTGTAA TERM 56 77243 - 77214 - g 79 -10.9 -3.9461 | gap 1 GTTGCGCAAGAACAA TTGCTGAAACG-GA TAA TCGCGCTTCAGCAA CGGTATAGGTCTGGC virD4 75279 - 77279 + | transport secretion system IV, VirD4 protein RHE_PA00071 78954 - 77704 - | IS4 insertion sequence transposase protein TERM 57 78961 - 78987 + H 71 -11.6 -3.17051 | overlap 78959 GCGCGTCATCGCCGA TACTCCTTCCGA TGG TCGGAAGGGGGA TATTGGTGATCAAGC TERM 58 79133 - 79103 - H 70 -10.5 -3.34715 | gap 1, opp_overlap 79109, overlap 79101 79109 GACGGTGCGCAAATA CATAGAGCGGGGCC TTGA GGTCCCGCT-TATG GACCGAGAAAGCCTC TERM 59 79109 - 79128 + H 78 -12.8 -3.28712 | opp_overlap 79109 79103 79101 GCGCAAATACATAGA GCGGGGCC TTGA GGTCCCGC TTATGGACCGAGAAA TERM 60 79252 - 79281 + H 72 -3.5 -4.71828 | gap 1, overlap 79253 79254 ACTCCGGGATCGAGG T-TATGCCGGCGGT TAC ACCGCCGTCACGTA TTTTCTTCGTGACGT TERM 61 79253 - 79279 + H 71 -8.6 -3.97413 | overlap 79252 79254 CTCCGGGATCGAGGT TATGCCGGCGGT TAC ACCGCCGTCACG TATTTTCTTCGTGAC RHE_PA00072 79432 - 80250 + | insertion sequence ATP-binding protein TERM 62 81084 - 81071 - g 79 -9.5 -4.13767 | CGCCCCACCTCAAAA GCCGC GCGG GCGGC CGCCGAAAAATCCTC RHE_PA00073 80247 - 81128 + | IS21 family insertion sequence ATP-binding protein RHE_PA00074 81362 - 81712 + | IS3 family insertion sequence transposase protein TERM 63 82436 - 82417 - T 74 -2.8 -4.88067 | overlap 82418 ATCCACTTAGAAAAA CGCCCGAA GCTG TTCAGACA AACCGAGCCAGCTCT TERM 64 84110 - 84080 - T 79 -3.9 -5.03713 | overlap 84081 AACAATTAAATAAAA GTGGCGGCGCA AAAACAGCA CACGCCGCCAT ACATCTTGAAGATAA RHE_PA00076 85624 - 85307 - | hypothetical protein RHE_PA00077 86262 - 86834 + | hypothetical protein RHE_PA00078 87750 - 86869 - | IS21 family insertion sequence ATP-binding protein TERM 65 86913 - 86926 + g 79 -9.5 -4.13767 | GAGGATTTTTCGGCG GCCGC CCGC GCGGC TTTTGAGGTGGGGCG RHE_PA00079 88565 - 87747 - | putative insertion sequence transposase protein TERM 66 88745 - 88716 - H 72 -3.5 -4.71828 | gap 1, overlap 88718 88719 ACGTCACGAAGAAAA TACGTGACGGCGGT GTA ACCGCCGGCATA-A CCTCGATCCCGGAGT TERM 67 88744 - 88718 - H 71 -8.6 -3.97413 | overlap 88716 88719 GTCACGAAGAAAATA CGTGACGGCGGT GTA ACCGCCGGCATA ACCTCGATCCCGGAG TERM 68 88864 - 88894 + H 70 -10.5 -3.34715 | gap 1, opp_overlap 88869, overlap 88862 88869 GAGGCTTTCTCGGTC CATA-AGCGGGACC TCAA GGCCCCGCTCTATG TATTTGCGCACCGTC TERM 69 88888 - 88869 - H 78 -12.8 -3.28712 | opp_overlap 88869 88864 88862 TTTCTCGGTCCATAA GCGGGACC TCAA GGCCCCGC TCTATGTATTTGCGC TERM 70 89036 - 89010 - g 70 -11.6 -3.17051 | overlap 89008 GCTTGATCACCAATA TCCCCCTTCCGA CCA TCGGAAGGAGTA TCGGCGATGACGCGC RHE_PA00080 88979 - 89329 + | hypothetical protein RHE_PA00081 89439 - 89945 + | IS21 family insertion sequence ATP-binding protein RHE_PA00082 90837 - 91199 + | insertion sequence transposase protein RHE_PA00083 91196 - 91543 + | insertion sequence transposase protein RHE_PA00084 91616 - 93181 + | IS66 family insertion sequence transposase protein RHE_PA00086 94322 - 93363 - | IS4 insertion sequence transposase protein RHE_PA00085 93181 - 93486 + | hypothetical protein TERM 71 95050 - 95040 - fH 86 -5.4 -5.26316 | opp_overlap 95040 TCAGTGCATAAAAAA TTGC GAC GCAA TTCATACAAATATAA TERM 72 95201 - 95185 - fH 77 -7.3 -4.42047 | AGGAAAAAATAACAA CAGTCAA AAA CTGACTG AACGAACACAACAAT TERM 73 97387 - 97399 + G 78 -4.8 -4.74103 | GGTTCGTCTAGAGAT GAGC TTGGC GCTC TTTTTAGGTTGGCGA otsAa 96241 - 97719 + | trehalose-6-phosphate synthase protein TERM 74 98013 - 97979 - f 77 -8.6 -4.20106 | opp_overlap 97986 AAAGGCGATCTAAAA GACCCATGACTGCCTC CAA AAGACAGTCTTGAATC TGATTTGCTCACTTT ocs 98216 - 99271 + | D-lysopine dehydrogenase/D-octopine dehydrogenase protein RHE_PA00089 100326 - 100631 + | hypothetical protein RHE_PA00090 101175 - 101477 + | IS3/IS911 insertion sequence transposase protein RHE_PA00091 101510 - 102313 + | insertion sequence transposase protein RHE_PA00092 102550 - 103386 + | IS4 insertion sequence transposase protein RHE_PA00093 104455 - 103349 - | mutator insertion sequence transposase protein TERM 75 103495 - 103521 + gT 74 -10.8 -3.58343 | opp_overlap 103498 GGTCGGAAGGGGATA TCAGCGTGCCAC AGC GGGGCAGGCTGA TTTGGGGATCATCGC RHE_PA00094 104864 - 104412 - | putative insertion sequence transposase protein RHE_PA00095 105400 - 104861 - | putative insertion sequence transposase protein TERM 76 104922 - 104933 + g 80 -5.8 -4.81082 | overlap 104919 GTGCAGCTTGCGCCA TCCC CGAC GGGA TTTTGTTGCTTGCTT TERM 77 105169 - 105143 - G 76 -6.5 -4.50627 | overlap 105145 CACCGACGAAACAAA GCCCTCCGTCT GTCGG AGACGCAGGCC GAAAACCAATCCCAG RHE_PA00096 105601 - 106554 + | hypothetical protein RHE_PA00097 107426 - 107121 - | hypothetical protein RHE_PA00098 108991 - 107426 - | IS66 insertion sequence transposase protein RHE_PA00099 109411 - 109064 - | putative insertion sequence transposase protein RHE_PA00100 109770 - 109408 - | putative insertion sequence transposase protein RHE_PA00101 111610 - 109976 - | IS66 family insertion sequence transposase protein RHE_PA00102 112029 - 111586 - | putative insertion sequence transposase protein RHE_PA00103 112426 - 112019 - | putative insertion sequence transposase protein TERM 78 112736 - 112703 - H 70 -12.4 -2.50492 | overlap 112702 112700 CAGGACTATGAAGAG CCAGATCGCAGCGC TTATCT GCACGGCGACCTGG AACCTCTTGAGCACT TERM 79 113199 - 113230 + G 70 -11.6 -3.13403 | gap 1, opp_overlap 113199 113196, overlap 113197 GCGCGCCGACAACGA GGGCGAG-GGCGGCA CGC TGTCGCTGCTTGCCC TGTTGATGAAGACCG TERM 80 113603 - 113653 + G 77 -13.1 -3.55071 | overlap 113601 113602 ATGAGGGCTTTTACG GCGTCGTCGTGCTCGGCGCCGTC TTTCT GACGGTGACGGGCGCCGAGGCGC TTTACGCCGATCTCG kupa 112942 - 114840 + | potassium transporter protein RHE_PA00105 115731 - 115240 - | hypothetical protein TERM 81 115561 - 115548 - G 71 -8.1 -3.84719 | ATCGCGAAACGGAAA CGCCT GCGT AGGCG GCGGCCGTATATTCA RHE_PA00106 116251 - 116018 - | IS3/IS4 family insertion sequence transposase protein RHE_PA00107 116802 - 116260 - | putative insertion sequence transposase protein RHE_PA00108 116805 - 117314 + | putative insertion sequence transposase protein virF2 118640 - 117735 - | virulence VirF2 protein RHE_PA00111 119757 - 119110 - | hypothetical protein RHE_PA00110 118889 - 119254 + | putative antirestriction protein TERM 82 119263 - 119297 + gF 75 -12.8 -3.06261 | TGCCTGAGGGCCATC AGTGTCGGTCGTTGGT CTC GCCAGCGGCCGGCACC TGTTCAGGCTTGGAC RHE_PA00112 119918 - 120226 + | hypothetical protein TERM 83 120278 - 120308 + F 93 -10.3 -4.66609 | opp_overlap 120278 CGGCGCCAAAGATAA GCCGGTTGCAGGC ATCGA GCCTTCCGCCGGC TTTTTCGGTGCGATA RHE_PA00113 120336 - 120713 + | hypothetical protein TERM 84 120699 - 120721 + T 82 -15.6 -2.86449 | opp_overlap 120680, overlap 120696 120696 120701 GGCATCATCGACGCC GAGCCGCCTT TCT GAGGCGGCTC TCATTCTGCTGGAAT TERM 85 120701 - 120719 + T 73 -12.4 -2.98072 | opp_overlap 120680, overlap 120696 120699 120696 CATCATCGACGCCGA GCCGCCTT TCT GAGGCGGC TCTCATTCTGCTGGA RHE_PA00115 122054 - 121725 - | IS1111A/IS1328/IS1533 family insertion sequence transposase protein TERM 86 122435 - 122490 + r 75 -13.3 -2.53995 | gap 2, opp_overlap 122438 ATGGCGACGTCGGAA TGACCGGCTCAACCTGTGGCCGCGTTC ATCA GCACGCGGCCACAAG--GTGCCCGTCA TAGATTACGATGCCT TERM 87 122488 - 122438 - R 73 -12.5 -2.71731 | gap 1, opp_overlap 122435 GCGACGTCGGAATGA CCGGCTCAACCTGTGGCCGCGTTC ATCA GCACGCGGCCACAAGGTGC-CCGT CATAGATTACGATGC RHE_PA00116 124221 - 122542 - | hypothetical protein RHE_PA00117 125143 - 124223 - | IS4 family insertion sequence transposase protein RHE_PA00118 125281 - 125727 + | putative insertion sequence transposase protein TERM 88 125866 - 125892 + F 74 -6.5 -4.4595 | gap 1, opp_overlap 125867, overlap 125867 AAAAGTCGTCATCAA ACCGC-CCGAGC TTGG GTTCGGCGCGGC TTTTACCTTTTCTGG RHE_PA00119 126662 - 127819 + | hypothetical protein TERM 89 128319 - 128309 - T 77 -3.2 -5.1101 | GGATCATTTAAAAAA CAAC GTG GTCG ACCCTTGACAGGTGG RHE_PA00120 129916 - 128363 - | hypothetical protein TERM 90 129379 - 129366 - G 87 -5.9 -5.11613 | AGACCATTGAAAAAA GCGCC GTCC GGCAC GATCTTGTCCAACAA TERM 91 130102 - 130090 - RH 73 -5.5 -4.64676 | overlap 130091 130094 GCAGCTCTAAGAAAA CCAGG CCT CCTGA GCGGCGTCCGATTCT RHE_PA00121 131076 - 130735 - | putative insertion sequence transposase protein RHE_PA00122 130879 - 131241 + | IS5 family insertion sequence transposase protein RHE_PA00123 131997 - 131593 - | hypothetical protein RHE_PA00124 132023 - 134086 + | putative insertion sequence ATP-binding protein TERM 92 134397 - 134347 - f 78 -14.7 -2.70932 | GTCTGCGTTGAATGA GGCTTTGACCAGCTGCGTAGCCC CCATC AGGCGAAGCAGGTGGTCATAGCC AGGCCTCAGGTCTCA RHE_PA00125 134452 - 135711 + | putative insertion sequence transposase protein TERM 93 135909 - 135890 - T 80 -11.4 -3.82484 | ACATCATAATTCAAA CGCATCGG GAGA CCGACGCG ATAACGACCTGCTGC RHE_PA00126 136503 - 135946 - | putative insertion sequence transposase protein RHE_PA00127 137203 - 136895 - | putative insertion sequence transposase protein virB2a 138282 - 138650 + | transport secretion system IV, VirB2 protein RHE_PA00129 138825 - 139334 + | hypothetical protein TERM 94 139482 - 139517 + F 79 -14 -2.88427 | overlap 139472 139516 CGCTTTCCGCAAGCC CGCTTCAAGGGCGTCG GCGA CGTCGGTCTTGAAGCG TCTCTCCCGGATCTT RHE_PA00130 139728 - 140234 + | hypothetical protein RHE_PA00131 141046 - 140228 - | hypothetical protein TERM 95 140282 - 140300 + g 70 -10.2 -3.62224 | overlap 140268 CCGCCGATCGATCGT CGGCGTCG ATT CCACGCCG TTCTTGACGACATGT TERM 96 141471 - 141492 + G 76 -5.7 -4.64766 | GCGGTGCGCGCACTG TCCGGCCGG TCCT CCTTCCGGA TTTTTGGGCTGTGAC RHE_PA00132 141186 - 141506 + | hypothetical protein RHE_PA00133 142264 - 141737 - | hypothetical protein RHE_PA00135 143549 - 143857 + | putative insertion sequence transposase protein RHE_PA00136 144050 - 144502 + | hypothetical protein TERM 97 144588 - 144611 + F 79 -12.4 -3.55071 | opp_overlap 144574 144584 ACCTGCAACGAGATG CAGGGGCTCC TTCG GGGGCCTCTG TTTCAACGGCTCTGC TERM 98 145437 - 145424 - f 72 -2.3 -4.92239 | overlap 145426 CTAAAAAGCTAAAAA GCCAG GTTG CCAGC AACGCGATCACAACT TERM 99 147492 - 147480 - g 75 -3.3 -4.91459 | overlap 147481 CAACAGCGACAAAAA TGGCT ATA AGCCG AGAGGTCGCAAGCCC RHE_PA00137 146218 - 147591 + | putative insertion sequence transposase protein RHE_PA00138 149093 - 147927 - | putative insertion sequence transposase protein TERM 100 148012 - 148025 + g 100 -3.7 -5.42259 | overlap 148003 AGTTTGCGCGCCAGG GCCAC TATC GCGGC TTTTTTTAAGCGTCC TERM 101 150426 - 150457 + G 74 -9.4 -3.85698 | gap 1, overlap 150427 CGAAAGGCGATGTGT TCCGGCTCG-TCGAG CAT CTCGATCGGGTCGGC TTTCTCGAAGGCGCC TERM 102 150427 - 150456 + G 70 -12.9 -2.91276 | gap 1, overlap 150426 GAAAGGCGATGTGTT CCGGCTCG-TCGAG CAT CTCGATCGGGTCGG CTTTCTCGAAGGCGC TERM 103 151118 - 151104 - g 76 -10 -3.92178 | ATGACTGGAACGAAA CCCTGA AGA TCAGGG ATAAGGAAAAGAGGG RHE_PA00139 150230 - 151261 + | hypothetical protein RHE_PA00140 151326 - 151931 + | hypothetical protein TERM 104 153059 - 153072 + G 73 -8.1 -4.07568 | ATCGCCGCGATCCGA CTGCC CGAA GGCAG TTTTCGGCGCGACGC TERM 105 154661 - 154675 + G 100 -12.8 -4.63048 | CACCTGAAACTTCCC GGCGCC TCT GGCGCC TTTGTTCTTTATGGG TERM 106 156702 - 156651 - g 76 -10.8 -3.68351 | gap 1, opp_overlap 156659, overlap 156652 GGCGTATCATGGAAA TCGGCAAGGACATCGACCGC-CTCG TTC CGACCGCGGCCGACGCCTTTGCCAT GACCATCGTCGGCAA TERM 107 156701 - 156652 - g 75 -14.3 -2.80796 | gap 1, opp_overlap 156659, overlap 156651 GCGTATCATGGAAAT CGGCAAGGACATCGACCGC-CTCG TTC CGACCGCGGCCGACGCCTTTGCCA TGACCATCGTCGGCA TERM 108 156957 - 156978 + G 78 -10.1 -4.07568 | overlap 156958 TCGGCGCCGTCTCCC GCCTCGAGC ACGC GCTCGAGGG TTTTGGCGAGGAGCA TERM 109 156958 - 156977 + G 75 -13.6 -3.04398 | overlap 156957 CGGCGCCGTCTCCCG CCTCGAGC ACGC GCTCGAGG GTTTTGGCGAGGAGC RHE_PA00141 152078 - 157177 + | DNA methylase TERM 110 157163 - 157212 + F 95 -13.5 -4.08216 | gap 1, overlap 157169 GAGGGCTTATCCGCC TCGGAAGCGGCCTGAGGTCCGACG CCA TGCCGGACCTCCGTCCGCT-CTGG TTTTGGAAGCGCTGC TERM 111 157169 - 157207 + F 88 -16.6 -3.09823 | overlap 157163 TTATCCGCCTCGGAA GCGGCCTGAGGTCCGACG CCA TGCCGGACCTCCGTCCGC TCTGGTTTTGGAAGC TERM 112 157378 - 157401 + G 100 -14.6 -5.71712 | gap 1 GACCTTCACACTTCA TGGGCC-GCGG TTT CCGCTGGCCCA TTTTTTTATCTCCCA RHE_PA00142 157307 - 157753 + | hypothetical protein TERM 113 158038 - 158001 - g 71 -11.3 -3.50853 | gap 1, overlap 157971 157998 158030 GGCGGCCAACGACAA CG-GCGCCATGCGCTCGA TGG TCGAGAACATCGCGCGCG AGCCGCTCAATCCGG RHE_PA00143 157744 - 159486 + | chromosome partitioning protein TERM 114 159517 - 159541 + F 100 -20 -4.05788 | TCTCCGCTTGACCTT CCGCCGCCGG TCCTC CCGGCGGCGG TTTCGTTTCCACCAC RHE_PA00144 159581 - 160057 + | hypothetical protein RHE_PA00145 160054 - 160938 + | hypothetical protein TERM 115 161099 - 161117 + G 86 -13.8 -3.86346 | ATATCGTCGCGGCAA GGCGCCCG AGC CGGGCGTC TTTCTCGAACGCTAC TERM 116 161236 - 161196 - g 83 -9.7 -4.36914 | overlap 161180 GCGCTTTCGAGAAAA CTCGCCCGACAG-GATGCG GCAAT CGCGGCGCTG-CGGGCGAG AGCCGGTTCCGACGG RHE_PA00146 160935 - 161294 + | hypothetical protein TERM 117 161492 - 161469 - g 72 -3.7 -4.62336 | overlap 161470 ATCCTAGGCCAAAAA CGCGCGCCC TTCGTC GCACACGCG AAACCCTGCCGCCTT RHE_PA00147 161291 - 161698 + | hypothetical protein RHE_PA00148 162066 - 162653 + | hypothetical protein TERM 118 162735 - 162693 - f 100 -17.7 -3.85698 | opp_overlap 162698 162701 CCGCCCTCCGATAAA CGCGAGAACGGCCGGTTCC CGGGC GGAGCCGGCTGTTCTCGTG TCGCTGACACGGTCA TERM 119 162698 - 162730 + F 86 -17.8 -2.64616 | opp_overlap 162693, overlap 162701 CTCCGATAAACGCGA GAACGGCCGGTTCC CGGGC GGAGCCGGCTGTTC TCGTGTCGCTGACAC TERM 120 162701 - 162727 + F 82 -13.7 -3.47573 | opp_overlap 162693, overlap 162698 CGATAAACGCGAGAA CGGCCGGTTCC CGGGC GGAGCCGGCTG TTCTCGTGTCGCTGA ardCa 162952 - 163875 + | conjugal transfer antirestriction protein RHE_PA00150 164548 - 163928 - | hypothetical protein TERM 121 164342 - 164358 + gF 78 -13.7 -3.14132 | GAAACTTTCTTCCCC TGGCGGC GGC GCCGCCA TTCCTCGCGCGGCAA RHE_PA00151 164538 - 164846 + | hypothetical protein TERM 122 164928 - 164898 - fH 100 -24.1 -3.89695 | opp_overlap 164898 CGGCCACAAAGACAA GCAGGCGGCAGGC ATCGA GCCTGCCGCCTGC TTTTTCGGTGCGATG TERM 123 164898 - 164928 + FH 100 -24.1 -4.66609 | opp_overlap 164898 CGGCCACAAAGACAA GCAGGCGGCAGGC ATCGA GCCTGCCGCCTGC TTTTTCGGTGCGATG RHE_PA00152 164992 - 165333 + | hypothetical protein TERM 124 165319 - 165341 + F 82 -15.6 -2.86747 | opp_overlap 165316, overlap 165316 165316 165321 GGCACCATCGAAGCC GAGCCGCCTT TCT GAGGCGGCTC TCATTCTGCTGGATC TERM 125 165321 - 165339 + F 73 -12.4 -2.98072 | opp_overlap 165316, overlap 165316 165319 165316 CACCATCGAAGCCGA GCCGCCTT TCT GAGGCGGC TCTCATTCTGCTGGA RHE_PA00153 165670 - 166161 + | hypothetical protein TERM 126 166679 - 166696 + T 81 -14.1 -3.16564 | ATGACGTGCTGGCAC GGCCCGC TTCG GCGGGCC TTGCTCAACTCGCCA TERM 127 166720 - 166736 + T 74 -6.5 -4.4595 | overlap 166725 CTCGCCACGCAGGCA CGCGG GCGATAA CCGCG TTTTCGCTTTTGTCG TERM 128 166725 - 166743 + T 77 -7.4 -4.36914 | overlap 166720 CACGCAGGCACGCGG GCGATAAC CGC GTTTTCGC TTTTGTCGGAGCAGA RHE_PA00154 166904 - 166701 - | hypothetical protein RHE_PA00155 167733 - 167155 - | putative nuclease protein TERM 129 167405 - 167417 + g 71 -5.5 -4.38712 | overlap 167395 TCCGGCGTGTCGATA TCTGC GAT GCGGA TTTTCTCGCCCTCGA traGa 169914 - 167977 - | conjugal transfer protein G TERM 130 168888 - 168904 + g 77 -2.1 -5.0065 | AGAGATTGGCGCGAA CCTGGCG CAG TGTCTGG TTTTCTTTCTCCGTA traDa 170161 - 169946 - | conjugal transfer protein D traCa 170462 - 170166 - | conjugal transfer protein C TERM 131 170480 - 170508 + H 86 -6 -5.02074 | overlap 170466 CCGTTCGTCTCCCTT TGGGTGAGAAAG CTTGT CTTTCGAACCCA TTTTTTCGGAGGTGA TERM 132 173551 - 173534 - g 71 -4.8 -4.43844 | GCAGGAGCGAGAAAA GGCACA AACGAA TGCGCC GGCGCTGGCCCGAAA traAa 170721 - 174032 + | conjugal transfer protein A traF 174029 - 174595 + | conjugal transfer protein F TERM 133 174723 - 174751 + G 81 -13.1 -3.72893 | overlap 174720 174725 CTTGCGCGAGCACGG TGGACGGCCGCGG TCA TCTCGGCCGTCTA TTTCCTGACCGCATC TERM 134 174725 - 174749 + G 79 -13.5 -3.44848 | overlap 174720 174723 TGCGCGAGCACGGTG GACGGCCGCGG TCA TCTCGGCCGTC TATTTCCTGACCGCA TERM 135 175025 - 175076 + G 100 -18.1 -3.96148 | gap 1 GTGGGGACTGGCTGC CGCGACAGCCGGCCTCATG-GG CCTCGTAAC CCGCATGTGGCCAGCTGTCGCG TTTGTCCTGGCAAGC TERM 136 175715 - 175728 + G 88 -3.8 -5.37593 | overlap 175703 CTGGGCGCGCCTGTT CGAC AAGTCC GTCG TTTTTTCCTTTAACA traB 174585 - 175748 + | conjugal transfer protein B traH 175766 - 176380 + | conjugal transfer protein H RHE_PA00163 176775 - 176398 - | hypothetical protein TERM 137 176738 - 176708 - G 93 -17.7 -3.39142 | gap 1 TTCACATGGAAGCAA TCGTGGCCGTGCGC TTGA GCG-ACGGCCACGA GAGACGTGTGAAGGC RHE_PA00164 177404 - 176772 - | hypothetical protein RHE_PA00165 177729 - 177508 - | putative transcriptional regulator protein traM 177958 - 178278 + | conjugal transfer transcriptional regulator (repressor) protein traR 179001 - 178282 - | conjugal transfer transcriptional regulator protein cinRa 179851 - 179066 - | autoinducer transcriptional regulator protein TERM 138 179729 - 179750 + g 73 -3.5 -4.72986 | opp_overlap 179730, overlap 179730 TTGGAATTCATCCAA AGCGGCCGC CACT GTCGCCGCA TTTTTCATCGCGCTG trbI 181277 - 179970 - | conjugal transfer protein I trbH 181727 - 181290 - | conjugal transfer protein H trbG 182543 - 181731 - | conjugal transfer protein G trbF 183223 - 182561 - | conjugal transfer protein F trbL 184666 - 183248 - | conjugal transfer protein L TERM 139 183375 - 183391 + gr 76 -7.9 -4.25104 | ATGGCCTTCTCCTTG GCAGCCG AGC CCGCTGC TTTTCCTGCCGAGCC trbJ 185417 - 184614 - | conjugal transfer protein J trbE 187845 - 185389 - | conjugal transfer protein E TERM 140 186721 - 186762 + gr 78 -5 -4.72272 | gap 1, overlap 186729 186731 CGTCTCGATCCGCGC GCCGAATCCCTCCGCCTGG ATCAG CC-GGCGGATTGCTTCTGC TTTTTCCTGCAGGGC trbD 188154 - 187855 - | conjugal transfer protein D trbC 188530 - 188147 - | conjugal transfer protein C trbB 189497 - 188520 - | conjugal transfer protein B traIa 190131 - 189508 - | autoinducer synthesis protein I TERM 141 190348 - 190391 + H 82 -13.3 -3.4052 | opp_overlap 190356 190368, overlap 190356 GAATGCTTGCTAACC GGCGAATATTCAAGGACAA ATAGGC TTGGCCTTGAGTTTTCGCC TTCGTTGCGTTAACC TERM 142 191284 - 191296 + G 71 -6.2 -4.2528 | CGTGATCGATTGCCC GCCG CAGCT CGGC TTTCTTACCTTGAGC repAa1 190505 - 191722 + | plasmid partitioning protein RepAa1 TERM 143 192201 - 192227 + G 71 -13.6 -2.50113 | opp_overlap 192203 192217, overlap 192200 GGTCGTCGGCGCGTA AAGGCGGCCGAG AAA CTCGGCCGCCCG GTTCGTGCGATCGTC TERM 144 192225 - 192203 - g 100 -20.6 -3.53012 | opp_overlap 192201 192200, overlap 192217 TCGTCGGCGCGTAAA GGCGGCCGAG AAA CTCGGCCGCC CGGTTCGTGCGATCG repBa1 191823 - 192830 + | plasmid partitioning protein RepBa1 TERM 145 192911 - 192874 - f 72 -9.9 -3.64103 | overlap 192880 CACTCACACGGCAAA GAAAAAGGCCCCCGAAA CAGA TCCCGGAAGCCCTTCTC AATTAGTTCGCACCT TERM 146 192905 - 192880 - f 91 -7.5 -5.28942 | overlap 192874 CACGGCAAAGAAAAA GGCCCCCGAAA CAGA TCCCGGAAGCC CTTCTCAATTAGTTC TERM 147 193548 - 193503 - g 95 -11.1 -4.63486 | AGTTGCTGAAGAAAA CCGACGCTTGAAGGTGATC AAGGAGAA GATCACCATCGCGCGCCGG GATATACGAAAGCTC repCa1 193018 - 194229 + | plasmid replication protein RepCa1 SEQUENCE gi|86359881|ref|NC_007763.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence (length 184338) lpsB1 277 - 843 + | galactosyltransferase protein TERM 1 2547 - 2566 + G 76 -7.8 -4.3129 | CATCCAGGCGGGCGC CATGGCCG AGGG CGGCGATG TTTTCCTGCTCGATA lpsB2 1051 - 3018 + | dTDP-glucose 4,6-dehydratase protein RHE_PB00003 4328 - 2994 - | putative 0-antigen polymerase TERM 2 3956 - 3945 - G 72 -7.2 -4.23999 | CCAGATCGAAAAGAA CGGC AGGA GCCG GAAAATCCAATCCAG TERM 3 4337 - 4354 + r 81 -3.4 -5.23316 | gap 1, overlap 4337 4338 CTGTCAAGCCGTGAA G-GCAGG AGGAA CCTGCGC TTTTTTCCTGTCGTA RHE_PB00004 5271 - 4885 - | hypothetical protein RHE_PB00005 5454 - 6176 + | GntR family transcriptional regulator uxuAb 6222 - 7409 + | mannonate dehydratase rmrR 8172 - 7468 - | multidrug efflux transcriptional regulator TetR family TERM 4 8233 - 8208 - H 77 -10.3 -3.76125 | CCACCTGAATTCAAA GGCCGCGGCCG GTGG CGACAGCGACC ACTCCAAGGAGAGAG rmrA 8252 - 9436 + | multidrug efflux transporter protein TERM 5 11035 - 11011 - g 80 -5.5 -4.72272 | overlap 11013 GCTTCTCACGAAAAA GCCGCAGGCTG GCG CAGGCGCCGGC GCCCATTGAAAAGCG rmrB 9461 - 11044 + | multidrug efflux transporter protein TERM 6 11084 - 11109 + T 78 -13.4 -3.05596 | opp_overlap 11084 TCATCCTGAAAGAAA GCCCTCCTTT ATCCGG AAAGGAGGGC TTCGCTGCGAAAATC TERM 7 11109 - 11084 - T 95 -13.4 -4.42806 | opp_overlap 11084 TCATCCTGAAAGAAA GCCCTCCTTT ATCCGG AAAGGAGGGC TTCGCTGCGAAAATC RHE_PB00010 11993 - 11124 - | putative aldose 1-epimerase protein RHE_PB00011 12410 - 12081 - | hypothetical protein TERM 8 13788 - 13764 - g 71 -13.7 -2.53263 | opp_overlap 13763 13764 TCGATGGCGAACGCA CGATCTTCCAA TCG CTGGAAGATCG GTTTCCCCAGGCAGG TERM 9 13826 - 13840 + G 70 -7.8 -4.08767 | overlap 13817 CCTTTGCGGGCTCTC GCCGGA TGT TTCGGC TTTTCCGGCGATGAC RHE_PB00012 12551 - 14173 + | ABC transporter ATP-binding protein TERM 10 14325 - 14299 - f 95 -16.6 -3.68073 | TATGTGAGCGAAGAA GAGCGCCGGC CGACATT GCCGGCGCTC TGCCACGATGATGAC RHE_PB00013 14352 - 14921 + | hypothetical protein TERM 11 15203 - 15234 + F 100 -12.4 -5.16071 | opp_overlap 15207 15208, overlap 15208 AAGATTGGTCAAGTA TAAAGCCCGGTGAT AACT ATCGCCGGGTTTTG TTTTTCTTGATAGTT TERM 12 15208 - 15229 + F 100 -12.3 -5.42605 | opp_overlap 15208 15207, overlap 15203 TGGTCAAGTATAAAG CCCGGTGAT AACT ATCGCCGGG TTTTGTTTTTCTTGA RHE_PB00014 15513 - 16034 + | hypothetical protein TERM 13 16022 - 16038 + F 72 -5.7 -4.3739 | GTCGATGACACTGAC CCCGGCG GAT TGACGGG TTTTGTCGCCCCCTG RHE_PB00015 16230 - 16577 + | putative acetyltransferase protein RHE_PB00016 17564 - 16635 - | LysR family transcriptional regulator RHE_PB00017 17650 - 18555 + | hypothetical protein TERM 14 18710 - 18746 + G 74 -5 -4.65895 | opp_overlap 18710 TGTCGATTGCTAAAT CGAGCGGCAGGGTTCT GGTCG AGGAGCTTGCCTCCCG TTTTTCGGTGACGCC TERM 15 19002 - 18976 - g 78 -14.4 -3.10715 | overlap 18959 GGCACGACGACCGAA GCGGTGGGCGAG GCG CTCGCCAACCAC CACGAGCTGATGGTG glpRb 18664 - 19437 + | glycerol-3-phosphate transcriptional regulator protein TERM 16 19858 - 19880 + G 91 -9 -4.55798 | overlap 19856 GGGCGGCATTCGCCC GGCCTGGCTG ATC CGGCTCGGCC TTTTCCTTTACGATC TERM 17 20739 - 20781 + G 81 -15.7 -3.01924 | gap 1, opp_overlap 20731, overlap 20731 20769 AAAGCCATCTGCCCG GCGGCGACTTTCCGGTTCGT GGCT ACGAAGCGG-AAGTCGCCGG TCTTAAGCGGCGCTA glpD 19559 - 21073 + | glycerol-3-phosphate dehydrogenase RHE_PB00020 21115 - 22209 + | sugar ABC transporter, ATP-binding protein RHE_PB00021 22219 - 23289 + | sugar ABC transporter, ATP-binding protein RHE_PB00022 23293 - 24156 + | sugar ABC transporter, permease protein TERM 18 24509 - 24528 + G 72 -7.8 -4.11394 | gap 1, opp_overlap 24509, overlap 24517 24524 CTGGCTGCTGACCAA CCGCATGGC GCC GCCG-GCGG TTTTCGCACTGCCCT RHE_PB00023 24171 - 24992 + | sugar ABC transporter, permease protein TERM 19 25049 - 25094 + G 100 -6.7 -5.40072 | GCCGACGGCGCTGTT CTTCCTGACGATCCTGACGCT TCTG ATCGCCATGAGCGTCTGGGAG TTTTTTTCGCCGGGC TERM 20 25108 - 25161 + G 76 -5.7 -4.56914 | opp_overlap 25144 25145, overlap 25108 25114 AGTTTTTTTCGCCGG GCGGCTCGCCGCGCGTGGGCGTG CTGCGTTT CGAAACCACCCGCGGCGACCGGC TTTTCATTTCGCTGC RHE_PB00024 25005 - 25286 + | hypothetical protein RHE_PB00025 25366 - 27090 + | sugar ABC transporter, substrate-binding protein TERM 21 27099 - 27126 + F 78 -14.1 -2.56596 | opp_overlap 27091 27087 27115, overlap 27095 GAAGTAAGGCGGACC CGGCCGGAGGC AACGAG GCCTCCGGCCA TCCCTTCCTGCCACC TERM 22 28158 - 28198 + G 72 -12.4 -3.28791 | overlap 28159 AGGCTCGATCTTCAT CGCCGGTGCCGCCGTGCA ATGGC TGCGCGACGGCCTCGGCA TTATCGGCCAGGCGT TERM 23 28159 - 28197 + G 77 -15.9 -2.57132 | overlap 28158 GGCTCGATCTTCATC GCCGGTGCCGCCGTGCA ATGGC TGCGCGACGGCCTCGGC ATTATCGGCCAGGCG glpKb 27241 - 28743 + | glycerol kinase protein TERM 24 28826 - 28799 - T 77 -12 -3.29144 | overlap 28817 CTATGGCGGTGACAA GGCCTCCCGTAT TCAA ATCCGGGAAGCC TCATCCCTGCTACTC RHE_PB00027 29573 - 28836 - | class II aminoacyl t-RNA synthetase domain-containing protein pdxAb 30870 - 29881 - | 4-hydroxythreonine-4-phosphate dehydrogenase protein TERM 25 30268 - 30280 + g 76 -6.2 -4.56597 | ATTGAGGCCGGCAAC GGCG ATCCG CGCC TTTTTGCCGAGACGC RHE_PB00029 32031 - 30898 - | iron alcohol dehydrogenase protein RHE_PB00030 33550 - 32363 - | putative glycosyl hydrolase protein dapAb 34463 - 33561 - | dihydrodipicolinate synthase protein TERM 26 36209 - 36184 - g 79 -11.1 -3.88232 | CGGCGGATACAAGAA CGACAAGGTCG ACAG CGCCCTTGCCG AAGCAGCAACCAAGG TERM 27 36243 - 36223 - g 71 -11.1 -3.43151 | opp_overlap 36222 36223, overlap 36224 CGAAGCAGCAACCAA GGCTGCGGA TGA TCCGCAGCG CGTTGCTCTCGCCCA TERM 28 36242 - 36224 - g 74 -14.6 -2.65409 | opp_overlap 36223 36222, overlap 36223 GAAGCAGCAACCAAG GCTGCGGA TGA TCCGCAGC GCGTTGCTCTCGCCC RHE_PB00032 34769 - 36406 + | putative oligopeptide ABC transporter, substrate-binding protein TERM 29 36463 - 36434 - f 77 -11.4 -3.61398 | opp_overlap 36434 36435, overlap 36435 GGTTCCTGGCAATAA GCGCGCGAAGGC TGCAAG GCCTTCGCGCAA GTTTCAAGACGAAGA TERM 30 36462 - 36435 - f 81 -14.9 -2.76696 | opp_overlap 36434 36435, overlap 36434 GTTCCTGGCAATAAG CGCGCGAAGGC TGCAAG GCCTTCGCGCA AGTTTCAAGACGAAG RHE_PB00033 36530 - 37492 + | putative oligopeptide ABC transporter, permease protein RHE_PB00034 37495 - 38454 + | putative oligopeptide ABC transporter, permease protein RHE_PB00035 38454 - 39458 + | oligopeptide ABC transporter, ATP-binding protein TERM 31 39879 - 39901 + G 70 -9.9 -3.54459 | gap 1 TCGCGGCGCTGCTCA CCGATGTCGG CTTG CCGACA-CGG TTTGCCCAGCGTTAC RHE_PB00036 39458 - 40450 + | oligopeptide ABC transporter, ATP-binding protein TERM 32 40658 - 40633 - g 80 -14.7 -3.14931 | opp_overlap 40648, overlap 40604 CTGAGCGGGCATGAA GCCGCCGAAAG GGTC CTGTCGGCGGC CGGCAAATTTCGCGA TERM 33 40991 - 41043 + G 71 -8.3 -3.85698 | gap 2, overlap 40992 GTGCGCGCGGCCTCG GTGCGGCGTTCGCCCGCCGGCTCGG CAAGA CCGAGC-GGCGGCCGG-CGACGGAA TTTGTGGCGACCCCG TERM 34 41412 - 41429 + G 76 -8.3 -4.18197 | GTGGTTCGATGTCGC GGCAGCC GACG GGCGGCC TTTTCGGTGCGCCGT RHE_PB00037 40447 - 41511 + | hypothetical protein RHE_PB00038 41536 - 42300 + | GntR family transcriptional regulator RHE_PB00039 42730 - 42467 - | hypothetical protein RHE_PB00040 43328 - 42801 - | hypothetical protein RHE_PB00041 45322 - 43430 - | L-isoaspartyl protein carboxyl methyltransferase protein TERM 35 47568 - 47558 - g 76 -8.2 -4.20696 | overlap 47559 GGATGAACGTGAAAA CGCG CTT CGCG AGGAATGGCGTGTCG RHE_PB00042 45411 - 47885 + | putative aminoacid/polyamine transporter, permease protein TERM 36 48292 - 48277 - g 80 -6.1 -4.81212 | overlap 48262 CGGATCACAAGAAAA TCCGC AAATGG GCGGA GGAAAGGGACGGACG RHE_PB00043 48240 - 48503 + | hypothetical protein RHE_PB00044 49350 - 48550 - | putative short chain oxidoreductase protein TERM 37 48693 - 48724 + g 75 -4.2 -4.78149 | opp_overlap 48694 48699, overlap 48694 48696 CCATCATCGCATCAT AGCCAATGCGCGCG ACTT CGCCCGCATCGTCC TTTTTCGCTTGTCCG RHE_PB00045 50566 - 49397 - | putative alcohol dehydrogenase protein RHE_PB00046 50689 - 51036 + | hypothetical protein RHE_PB00047 51777 - 51055 - | putative serine/threonine-specific protein phosphatase protein RHE_PB00048 52594 - 51788 - | hypothetical protein RHE_PB00049 52995 - 52639 - | hypothetical protein TERM 38 52828 - 52808 - G 77 -3.9 -4.85433 | overlap 52810 ACAGAAACGCAAAAA TATCGACCG GCG CGAACGACA GGCCCAGAAAGGAGA RHE_PB00050 54389 - 53376 - | putative oxidoreductase protein TERM 39 53450 - 53466 + g 93 -7.9 -5.02074 | overlap 53448 ACGCGGGATCGTAGC GCTGGCC TCC GGCGAGC TTTTTTGCCCAATCC RHE_PB00051 55387 - 54398 - | putative oxidoreductase protein TERM 40 56372 - 56359 - g 72 -3.7 -4.56597 | overlap 56360 CTGGCCTTGGAAAAA CCCGC AGCC GCCGG TCACGTGATCAACAT RHE_PB00052 55567 - 56670 + | NDP-glucose dehydratase epimerase protein TERM 41 58603 - 58588 - g 76 -10.4 -3.93038 | GACTTGAACAGGAAA CCGGCT GGCA AGCCGG AATCGGATGGCGTCA RHE_PB00053 56667 - 58706 + | nucleoside diphosphate epimerase protein TERM 42 59015 - 59060 + G 78 -11.7 -3.6869 | opp_overlap 59040 CTGCATCTCAATCTG CCATCGCAGGCGGCTGGCATG GAAA CAAACCTGCCGATTGCGGTGG TTTGCCATTCCTGTG TERM 43 59605 - 59618 + G 76 -5.9 -4.56597 | opp_overlap 59603, overlap 59604 59602 TTATCGCGAGATATG GGGCG GAGC CGCTC TTTTTGCCGAGCGGC RHE_PB00054 58784 - 59815 + | putative glycosyltransferase protein RHE_PB00055 59818 - 60948 + | hypothetical protein RHE_PB00056 60945 - 62033 + | hypothetical protein TERM 44 62825 - 62852 + G 71 -12.6 -3.03124 | opp_overlap 62823, overlap 62807 62836 CGCAGCGATATGATT GCCGCCGGCTGG TCTC CCAGCGTGCGGC TGTTCGAGGCTGCCG RHE_PB00057 62030 - 63130 + | hypothetical protein rmlB 63143 - 64189 + | dTDP-glucose 4,6-dehydratase protein RHE_PB00059 64210 - 64944 + | putative methyltransferase protein RHE_PB00060 64978 - 65892 + | putative diheme cytochrome c-type signal-peptide protein RHE_PB00061 66303 - 65926 - | putative cytochrome c class I protein TERM 45 65986 - 65996 + g 86 -8.2 -4.58395 | overlap 65971 GGATATTCCGGTCGC CGGC ATC GCCG TTTTTGGCGAATGGG TERM 46 66212 - 66229 + g 72 -7.7 -4.14739 | gap 1, overlap 66206 TCGCCTTTCGTCATG GCGA-CCG CCG CGGCTCGC TTTTCCGATCGCTGC RHE_PB00062 66922 - 66323 - | hypothetical protein RHE_PB00063 67814 - 67212 - | putative cytochrome c oxidase subunit III protein RHE_PB00064 69724 - 67811 - | cytochrome c oxidase subunit I protein TERM 47 68741 - 68729 - G 74 -4.8 -4.57569 | CGAGGCGGTGAAAAA GCTG CTCCC CAGC CGCGGCAGGCCGGCC RHE_PB00065 70704 - 69721 - | cytochrome c oxidase subunit II protein TERM 48 70505 - 70516 + g 73 -3.6 -4.72272 | overlap 70493 70503 TCAGTCTGCGGTTCG CCGG GGGC CTGG TTTTTCCTGCGAACC RHE_PB00066 71147 - 70701 - | cytochrome c oxidase subunit III protein TERM 49 71443 - 71429 - R 70 -11.4 -3.01712 | TGCCTCCGGGTAATA GGCTGC GCA GCAGCC TGCCGGAATATCGTG TERM 50 73635 - 73667 + r 70 -11.8 -2.62616 | opp_overlap 73634 GAATTTCTCCAAGAG CTCTCGCCGCCGGC CATCC GCCGGCCGCGTGCG TGCTCTCACCGATAG RHE_PB00068 74543 - 74286 - | hypothetical protein TERM 51 75646 - 75671 + r 70 -11.7 -3.01712 | CGGTCGGAACCCCGA GGCCGGCAGCG GCGA CGCCGCCGGCA TCTTCGGCAGCGCGG RHE_PB00070 79289 - 77670 - | FAD-oxidoreductase protein TERM 52 79232 - 79218 - G 73 -12.8 -3.17146 | overlap 79216 79214 GTTTGCCAGAACACA GCCGGC GGA GCCGGC GCCGACAATGATGAA lyxX 80821 - 79292 - | L-xylulose kinase protein TERM 53 79388 - 79378 - G 73 -8.2 -3.9712 | overlap 79379 CTATGTCATTATAAA GCGC GTA GCGC CGGTCGTAATGCGCG RHE_PB00072 81726 - 80908 - | putative aldolase protein TERM 54 81102 - 81073 - G 81 -13.5 -3.55563 | overlap 81076 AGTGGATTTGGCAAA GACGGCGGCGAGA TCCT CCTTGCCGCCGCC GCGCACCAGCACCGG RHE_PB00073 83471 - 81723 - | glycerol-3-phosphate dehydrogenase protein RHE_PB00074 84478 - 83483 - | aldoketo reductase protein TERM 55 84089 - 84111 + g 71 -9 -3.73953 | opp_overlap 84089 GTAGAGGTCGATATA GTCAGTGCCG AGG CGGCGCAGGC TTTCCTCCACCTCGT RHE_PB00075 85482 - 84475 - | CRP family transcriptional regulator TERM 56 85112 - 85124 + g 79 -9.1 -4.15044 | GTGATGCAGATCGTG TCGCC ATC GGCGA TTTCTTCGAGCAGCA RHE_PB00076 86473 - 85484 - | sugar ABC transporter, permease protein TERM 57 86406 - 86422 + g 74 -12.3 -3.53091 | overlap 86403 ATCAGCCCCGCCTCG CGCATCG TGG CGATGCG TTTGAAGGACGACGT RHE_PB00077 88022 - 86496 - | sugar ABC transporter, ATP-binding protein TERM 58 87676 - 87723 + g 73 -8.6 -4.07885 | overlap 87677 87678 CGCTCCAGCCTGCGA TA-GTTCATGAGCGGCGCCCGA CGGCGA TTGGTCGCCGC-CATGAACATG TTTTCGGCAACCGTG TERM 59 87677 - 87721 + g 73 -11.5 -3.63744 | gap 1, overlap 87676 87678 GCTCCAGCCTGCGAT AGTTCATGAGCGGCGCCCGA CGGCGA TTGGTCGCCGC-CATGAACA TGTTTTCGGCAACCG TERM 60 87678 - 87720 + g 75 -15 -2.78032 | gap 1, overlap 87677 87676 CTCCAGCCTGCGATA GTTCATGAGCGGCGCCCGA CGGCGA TTGGTCGCCGC-CATGAAC ATGTTTTCGGCAACC TERM 61 88045 - 88069 + r 74 -12.9 -2.76583 | overlap 88044 88054 88066 CTCCCTCTCAATCTC GGCCATCCG CACCGAA CGGATGGCC CTTTCGGGGTCTTAT RHE_PB00078 89082 - 88081 - | sugar ABC transporter, substrate-binding protein TERM 62 89087 - 89076 - G 86 -7.2 -4.7254 | ACGTTGCAGCAAAAA CCGC CATC GCGG TCGTGGTGAGTAAAG thiE 89905 - 89291 - | thiamine-phosphate pyrophosphorylase thiG 90675 - 89902 - | thiazole synthase thiO 91854 - 90871 - | thiamine biosynthesis FAD oxidoreductase protein thiC 93689 - 91857 - | thiamine biosynthesis protein ThiC TERM 63 93309 - 93323 + g 78 -7 -4.54727 | overlap 93269 93311 ATAGGCGAGCTGGGT GACGGC ACG GCCGGC TTTTGCTTTCAGCGG TERM 64 94063 - 94083 + G 81 -14 -3.64703 | overlap 94038 AACATTGATTGTGGA TGGGCCGG CTTTA CCGGCCCA TTTCGCTCGCGCCCC TERM 65 94187 - 94197 + G 76 -6.8 -4.48221 | CGGCTCCTCATCCTG TCGC AAC GCGA TTTTCTGCATTCATG TERM 66 94569 - 94545 - g 75 -12.2 -3.63627 | gap 1 GCCCGATACGGTAAA GGTCTTCGGCG GCCA CGCCG-AGACC GTGGAGGCGACGAAG RHE_PB00083 94015 - 95478 + | putative serine/threonine-specific protein phosphatase protein TERM 67 96432 - 96414 - g 73 -8.1 -3.98214 | gap 1 ACGATCGACGACAAA GCGCTGGC GGTC GCC-GCGC ATATGGACCTGCTGG RHE_PB00084 95478 - 98948 + | hypothetical protein RHE_PB00085 99417 - 98995 - | putative plasmid stabilization protein RHE_PB00086 99668 - 99414 - | hypothetical protein TERM 68 100447 - 100466 + G 78 -2.8 -4.99043 | gap 1, overlap 100447 100448 CACAGTTCGTTTCCC G-GTATCGG CTC CCGGTGCGC TTTTCTTTCTCGGCG RHE_PB00087 99914 - 100828 + | acetamidase/formamidase protein pipb1 101747 - 100845 - | proline iminopeptidase protein RHE_PB00089 102604 - 101810 - | LuxR family transcriptional regulator TERM 69 102348 - 102329 - G 80 -4.9 -4.84761 | opp_overlap 102335 ATAGTTCCAGAAAAA CGGTGCG GAGGTG CGCAGCG CCACCTGTTGGACCG pipb2 102731 - 103621 + | proline iminopeptidase protein TERM 70 103907 - 103891 - g 70 -10.1 -3.62046 | overlap 103892 CTACTTCCTCAAGAA CCTCGCC AAT GGCGAGA TGGGCAAGTCGATCC TERM 71 104049 - 104100 + G 72 -7.3 -4.12198 | gap 3, overlap 104051 TCGCCGCACGCAATG CCG--GCCGCGCGTCG-GACCATGCG GTG CGCATCGTCTCGACCTTCGGCATCGG TTTTCCCCCCTTCTG RHE_PB00091 103673 - 104611 + | peptide ABC transporter permease TERM 72 104639 - 104652 + G 91 -9.5 -4.56597 | TCGTGCCTGCATCGC CCGGC TGGC GCCGG TTTTTCCGCCGGCAG TERM 73 104688 - 104700 + G 72 -2.6 -4.78107 | overlap 104673 GCTTGCCGTCGGTGC CGGC CTGCT GCTG TTTTTCGTCCTGCTG RHE_PB00092 104608 - 105459 + | peptide ABC transporter permease TERM 74 107032 - 107004 - g 86 -16.8 -3.15249 | gap 1, opp_overlap 107006 GAGATCGTCGAGGAA GGCCGCTGCGAAG AGGT CTTCGC-GCGGCC GAAGCATGCCTATAC TERM 75 107114 - 107090 - g 74 -12.7 -3.31461 | CATCGATCCCGACAA GCCGCTGCCGC GGG GCGCCGGCGGC AAGGAGGATCTGCAA RHE_PB00093 105456 - 107189 + | oligopeptide ABC transporter, ATP-binding protein TERM 76 107780 - 107728 - g 93 -13.4 -4.11216 | opp_overlap 107705, overlap 107729 GGCCTACGGCGAAAA GCCGGTCGCATCCGGCGCC-TTCGTC ATT GACGAATGGCGGCGCG-GCGACCGGG TGATCCTGAAGAAGA TERM 77 107779 - 107729 - g 88 -16.9 -3.06515 | opp_overlap 107705, overlap 107728 GCCTACGGCGAAAAG CCGGTCGCATCCGGCGCC-TTCGTC ATT GACGAATGGCGGCGCG-GCGACCGG GTGATCCTGAAGAAG RHE_PB00094 107186 - 108700 + | peptide ABC transporter substrate-binding protein TERM 78 108716 - 108749 + T 100 -14.6 -4.24342 | gap 1, overlap 108719 108720 GGTCCGGCAGTTCGC AAGCGCTCCGCCGCC GTGAA GGCGGCGGAGC-CTG TTTATTGCTGCGACA TERM 79 108719 - 108747 + T 100 -17.4 -3.72374 | overlap 108716 108720 CCGGCAGTTCGCAAG CGCTCCGCCGCC GTGAA GGCGGCGGAGCC TGTTTATTGCTGCGA TERM 80 108720 - 108746 + T 100 -20.9 -2.82942 | overlap 108719 108716 CGGCAGTTCGCAAGC GCTCCGCCGCC GTGAA GGCGGCGGAGC CTGTTTATTGCTGCG RHE_PB00095 109659 - 108784 - | putative glutathione S-transferase YghU TERM 81 109822 - 109807 - H 74 -7.5 -4.2679 | CAACCCTGACGAAAA CGGCC GGTTCA GGCCG CACCCTCGATCAATC RHE_PB00096 109992 - 110564 + | putative universal stress protein TERM 82 110899 - 110879 - g 85 -10.3 -4.3129 | opp_overlap 110890, overlap 110880 GAGTGATGAGGAAAA GCGCGGCCG CTT CGACCGCGG CGAGATCGATATGTC TERM 83 110898 - 110880 - g 76 -13.8 -3.18292 | opp_overlap 110890, overlap 110879 AGTGATGAGGAAAAG CGCGGCCG CTT CGACCGCG GCGAGATCGATATGT TERM 84 110993 - 111024 + G 71 -13.6 -2.54504 | opp_overlap 110992 110990 110993, overlap 110992 110990 110988 110995 TCCCTATCACAACAG CGCCGGCTTCGCCG ATTT CGGCGACGCCGATG ATATCTTTGCGAGCT TERM 85 111024 - 110993 - g 71 -13.6 -2.56271 | opp_overlap 110993 110992 110990 110988 110995, overlap 110992 110990 TCCCTATCACAACAG CGCCGGCTTCGCCG ATTT CGGCGACGCCGATG ATATCTTTGCGAGCT RHE_PB00097 110697 - 111611 + | DnaJ family molecular chaperone RHE_PB00098 111614 - 111937 + | hypothetical protein cdsAb 112878 - 111949 - | phosphatidate cytidylyltransferase protein RHE_PB00100 113495 - 112875 - | putative acyltransferase protein TERM 86 112919 - 112941 + g 85 -10.4 -4.25283 | CGATGACCGCGGCGC GGGCGCGGGC CAG GAACGCGCCC TTTTCCTCGCCCGCT TERM 87 113221 - 113252 + g 74 -5 -4.58395 | overlap 113249 113250 TTACTGTCGGGCAGA GGCTTGCGGTCTAT CAAG ACAGCACGCAGGCC TTTTTCCGCGATGAA pgsAb 114121 - 113492 - | CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein TERM 88 113795 - 113773 - G 71 -12.6 -3.07935 | overlap 113787 113788 AGCCGATTGAGGGAA CGCCGCAGGC ATA ACCGGCGGCG ACAAGCAGCAGGCTG RHE_PB00102 114301 - 115287 + | putative lipoprotein periplasmic protein TERM 89 115295 - 115276 - f 74 -12.2 -3.07994 | overlap 115278 CCGAAGGTGATGGAA GAGCCGAA GTAG TTCGGCTC ATGCAGGGCGACGCG TERM 90 115457 - 115486 + G 71 -11.3 -3.53012 | overlap 115472 115476 CGCGGCGCATGCCTG CGACCGGGAGCGG CAGA CCGTGCCCCGTCG TTTCGCGGCGCGGCC TERM 91 115729 - 115779 + G 70 -11.7 -3.14564 | TCTGTCGCAACCCTC TCGATCCCACGCGCACCGCCGG-CG GCT CGTCCGGCGGCGCG-GCGGCAGCGG TTGCTGCCGGAATCG RHE_PB00103 115296 - 116708 + | putative amidase protein TERM 92 116947 - 116923 - g 85 -15 -3.64703 | gap 1 GGTGCCGCAGGGAAA GCCGCGCGCGG CGAT CCGCGC-CGGC GTCGGCATGGTGCAT RHE_PB00104 116705 - 118237 + | sugar ABC transporter, ATP-binding protein TERM 93 118897 - 118930 + G 76 -8.1 -4.13014 | gap 1, overlap 118896 TGTTCGGCATGCAGT CGCGCGCCG-CAGG CCTCAAT CCTGCCGGTGCGAG TTTTGCCGGTGTGCC RHE_PB00105 118227 - 119276 + | sugar ABC transporter, permease protein RHE_PB00106 119273 - 120217 + | sugar ABC transporter, permease protein TERM 94 120406 - 120367 - g 89 -14.5 -3.83205 | gap 2, opp_overlap 120377 AGGCCGCAGAGGAAA TCGACGCAACGGGCAGGCT GGTG AGCCCGCCC-TT-CGTCGA TCCGCATTTCCATAT codAb 120243 - 121532 + | cytosine deaminase RHE_PB00108 121864 - 121523 - | putative methyltransferase protein TERM 95 121880 - 121859 - G 100 -9.5 -5.03314 | gap 1 GGGATCGGCAAAAAA CATCACGCCG AAC CGGC-TGATG ACGCGAAAACAGATT RHE_PB00109 121960 - 122838 + | putative hydrolase protein TERM 96 122888 - 122848 - T 74 -11.2 -3.33509 | opp_overlap 122846 122852 GGCTAAACAATTGAA CGGGTCATGCATGCCGG-CG TTG CGTCCGGCATGCATG-CATG AATTCCCTCAGGCGA TERM 97 122852 - 122886 + T 78 -14.5 -2.54896 | gap 2, opp_overlap 122848, overlap 122846 AAACAATTGAACGGG T-CATGCATGCCGG-CG TTG CGTCCGGCATGCATGCA TGAATTCCCTCAGGC msrAb 123405 - 122896 - | methionine sulfoxide reductase A suhBb 124372 - 123539 - | myo-inositol-1(or 4)-monophosphatase protein TERM 98 123654 - 123636 - G 83 -8 -4.56597 | TCGGCGCCGGAAAAA CGGGTGAC GAT GCCGCCCG CCTCTTCGACCATCA TERM 99 123774 - 123756 - G 71 -8.8 -3.92373 | opp_overlap 123770 123771, overlap 123757 123769 TAGGCGATCGACAAA GCCGCC GAGCCAA GGCGGC GGACGCCAGCCGTGT RHE_PB00112 125583 - 124483 - | sugar ABC transporter, ATP-binding protein RHE_PB00113 126508 - 125621 - | putative sugar ABC transporter, permease protein RHE_PB00114 127420 - 126512 - | putative sugar ABC transporter, permease protein TERM 100 127471 - 127447 - R 100 -21.5 -3.41602 | TTCAGCCTACCACAA TGGGCTGCGCC GGA GGCGCAGCCCA GCGTTCACGGTCGCG RHE_PB00115 128749 - 127487 - | putative sugar ABC transporter, substrate-binding protein TERM 101 128779 - 128767 - R 100 -10.5 -5.00616 | CTTCCTCCCAAAAAA GCGGC TGC GCCGC GAAAAGACCAGTTAG RHE_PB00116 129754 - 128855 - | hypothetical protein RHE_PB00117 130764 - 129766 - | putative oxidoreductase protein TERM 102 130392 - 130379 - G 71 -9.5 -3.73224 | CCACTGTCGACGAAA CGGCG AAGG CGCCG GATGCCCGAGATGAA RHE_PB00118 130935 - 132008 + | LacI family transcription regulator ntaA 133368 - 132031 - | nitrilotriacetate monooxygenase protein, component A RHE_PB00120 133682 - 134899 + | FMNH2-dependent monooxygenase protein TERM 103 134921 - 134958 + T 95 -19.3 -2.72144 | opp_overlap 134927, overlap 134927 TGTCTCACTCTAAAT TGAAAACCCCGCTGCCG GTGC TGGCAGCGGGGTTTTTG CTTTCAAGGCCGTGA TERM 104 134927 - 134952 + T 100 -18.3 -4.98531 | opp_overlap 134927, overlap 134921 ACTCTAAATTGAAAA CCCCGCTGCCG GTGC TGGCAGCGGGG TTTTTGCTTTCAAGG TERM 105 134952 - 134927 - T 100 -17.6 -4.35926 | opp_overlap 134927 134921 ACTCTAAATTGAAAA CCCCGCTGCC GGTGCT GGCAGCGGGG TTTTTGCTTTCAAGG RHE_PB00121 136187 - 134979 - | acyl-CoA dehydrogenase protein TERM 106 136253 - 136215 - R 93 -13.9 -3.9243 | gap 1, overlap 136220 CAATTCTGTAAACAA GAT-GATCCGGCGGGAGC CCAA GCTCCCGCCGGAAGGATC GAGATGGTGCGCAGC TERM 107 136247 - 136220 - R 100 -22.8 -2.90309 | overlap 136215 CTGTAAACAAGATGA TCCGGCGGGAGC CCAA GCTCCCGCCGGA AGGATCGAGATGGTG RHE_PB00122 137316 - 136270 - | sugar ABC transporter, substrate-binding protein RHE_PB00123 137479 - 139029 + | sugar ABC transporter, ATP-binding protein TERM 108 139637 - 139662 + G 84 -8.3 -4.48987 | gap 1, overlap 139637 139636 GCCGGTTTCCGTATT GC-TGATGGCGA CCG TCGCCGTCGCGC TTTTCGTTCTCACCG RHE_PB00124 139026 - 140084 + | putative sugar ABC transporter, permease protein RHE_PB00125 140103 - 141500 + | DszA family monooxygenase TERM 109 141785 - 141801 + G 91 -2.9 -5.52384 | CCTCAATCCCGCGAT CGTCG CATCGAA CGGCG TTTTTTTCATCGCCA TERM 110 142570 - 142584 + G 71 -5.7 -4.32049 | opp_overlap 142569 142565 CCATCGACAAGAAAT TCGTG GTCGA CACGA TTTTCCTCGGTTATG TERM 111 142964 - 142985 + G 72 -7.9 -4.13945 | overlap 142965 CATTCTCGTTCAATC CGGCACGCC CGCT GGTGTGCCC TTTTCCAATCAGGGT RHE_PB00126 141624 - 143234 + | oligopeptide ABC transporter, substrate-binding protein TERM 112 143340 - 143352 + F 83 -7.7 -4.77036 | overlap 143306 143303 143297 143296 GGTGCTGCTGATCGT GGTGA TCT TCACC TTTTTCATGCTCGAA RHE_PB00127 143470 - 144264 + | oligopeptide ABC transporter, permease protein TERM 113 144829 - 144879 + G 100 -16.7 -4.07568 | overlap 144830 144868 144869 GGGAAATCCTGCCGA ACGCGCTGCCGCCGGTGCTGGCG CTTTC CGCCACCATCGTCGCCGGCGCGA TTTTGACCGAGGCGG TERM 114 144830 - 144878 + G 93 -20.2 -3.04398 | overlap 144829 144868 144869 GGAAATCCTGCCGAA CGCGCTGCCGCCGGTGCTGGCG CTTTC CGCCACCATCGTCGCCGGCGCG ATTTTGACCGAGGCG RHE_PB00128 144261 - 145094 + | oligopeptide ABC transporter, permease protein TERM 115 145265 - 145221 - g 70 -9.9 -3.56092 | gap 1, opp_overlap 145227 CGATCATCGGCGAAA GCGGCTCCGGCAAGAGCACG CTCGCC CGTGCGCTCGCCGGT-CTGC TGCCGAACGGAGCGA TERM 116 145227 - 145260 + G 72 -13.8 -2.78384 | opp_overlap 145221 TCGGCGAAAGCGGCT CCGGCAAGAGCACG CTCGCC CGTGCGCTCGCCGG TCTGCTGCCGAACGG RHE_PB00129 145091 - 145885 + | oligopeptide ABC transporter, ATP-binding protein RHE_PB00130 145882 - 146661 + | putative oligopeptide ABC transporter, ATP binding protein RHE_PB00131 146673 - 147767 + | aspartate aminotransferase protein TERM 117 148590 - 148571 - g 100 -12.2 -4.59773 | opp_overlap 148584 CTTTACTCTCAAAAA CGCTGAAG CTGG CTTCAGCG AGGAGGAATGGCTGA RHE_PB00132 147831 - 148700 + | hypothetical protein RHE_PB00133 149524 - 148697 - | putative inositol monophosphatase protein RHE_PB00134 150483 - 149524 - | LacI family transcriptional regulator RHE_PB00135 151291 - 150521 - | glycerophosphoryl diester phosphodiesterase protein RHE_PB00136 152346 - 151291 - | putative sugar ABC transporter, ATP-binding protein RHE_PB00137 153188 - 152346 - | putative sugar ABC transporter, permease protein RHE_PB00138 154492 - 153191 - | putative sugar ABC transporter, permease protein TERM 118 154503 - 154554 + r 95 -18.6 -3.03124 | opp_overlap 154512, overlap 154508 TTCATGGAAGCCTCC TCGAAGGGATCGATCGGGCGGCGG ATCG CCGCCGCCCGGAGGGACGCTTCGA TCTTAGCGGATGACG TERM 119 154508 - 154549 + r 71 -11.3 -3.1855 | opp_overlap 154512, overlap 154503 GGAAGCCTCCTCGAA GGGATCGATCGGGCGGCGG ATCG CCGCCGCCCGGAGGGACGC TTCGATCTTAGCGGA TERM 120 154546 - 154512 - R 70 -12.1 -2.52464 | gap 1, opp_overlap 154508 154503 GCCTCCTCGAAGGGA TCGATC-GGGCGGCGG ATCG CCGCCGCCCGGAGGGA CGCTTCGATCTTAGC RHE_PB00139 155903 - 154557 - | putative sugar ABC transporter, substrate-binding protein RHE_PB00140 156151 - 156609 + | hypothetical protein TERM 121 157450 - 157437 - g 84 -8.1 -4.40572 | AGAACTGGGAGAAAA CGCCA CCAA TGGCG TGCGCAACCGTGTCT RHE_PB00141 156694 - 157707 + | hypothetical protein RHE_PB00142 158193 - 157714 - | insertion sequence transposase protein TERM 122 158255 - 158224 - R 86 -11.6 -4.15044 | gap 1, opp_overlap 158230 158248, overlap 158227 GGTCTCGTCAATAAA GACGAG-CCGCTTCG GAT CGAAGCGGTCTTGCC AGGCTTTCCAGCGGG TERM 123 158250 - 158227 - R 71 -11.8 -2.80244 | gap 1, opp_overlap 158230 158248, overlap 158224 CTCGTCAATAAAGAC GAGCCGCTTCG GAT CGAAGCGG-TC TTGCCAGGCTTTCCA TERM 124 158230 - 158248 + r 80 -14.6 -3.03635 | opp_overlap 158227 158224 GTCAATAAAGACGAG CCGCTTCG GAT CGAAGCGG TCTTGCCAGGCTTTC RHE_PB00143 158662 - 158303 - | insertion sequence transposase protein RHE_PB00144 159838 - 158807 - | phosphoglycerate oxidoreductase protein RHE_PB00145 160137 - 160781 + | hypothetical protein TERM 125 160887 - 160916 + T 95 -10.6 -4.73388 | opp_overlap 160890, overlap 160888 160890 ACTGAAATGAAGAGG AAAGGGGCGCGG TCTGAT CCGCGCCCCTCC TTTTTCATCAGCCTT TERM 126 160888 - 160915 + T 85 -14.1 -3.4331 | opp_overlap 160890, overlap 160887 160890 CTGAAATGAAGAGGA AAGGGGCGCGG TCTGAT CCGCGCCCCTC CTTTTTCATCAGCCT TERM 127 160913 - 160890 - T 100 -16.7 -3.98816 | opp_overlap 160888 160887 160890 GAAATGAAGAGGAAA GGGGCGCGG TCTGAT CCGCGCCCC TCCTTTTTCATCAGC TERM 128 160890 - 160913 + T 90 -16.7 -3.28472 | opp_overlap 160890, overlap 160888 160887 GAAATGAAGAGGAAA GGGGCGCGG TCTGAT CCGCGCCCC TCCTTTTTCATCAGC RHE_PB00146 162927 - 160924 - | oxidoreductase protein TERM 129 161812 - 161776 - G 70 -10.2 -3.64283 | gap 1, overlap 161765 GAAATTCGGGAAGAA CTCGAAGCCGAGCGTGA CGAC TGACGC-CGGCTTGGAG ATGCCGGGAATCTGG TERM 130 162561 - 162580 + g 74 -10.6 -3.74526 | opp_overlap 162556, overlap 162562 GGTACATGAAGGCCT CGCCGGCG AAGA CGCCGGCC TTCTTGGCTTCGTAA TERM 131 162562 - 162579 + g 74 -14.1 -2.84234 | opp_overlap 162556, overlap 162561 GTACATGAAGGCCTC GCCGGCG AAGA CGCCGGC CTTCTTGGCTTCGTA RHE_PB00147 164045 - 162963 - | sugar ABC transporter, ATP-binding protein RHE_PB00148 164897 - 164061 - | sugar ABC transporter, permease protein RHE_PB00149 165754 - 164894 - | sugar ABC transporter, permease protein TERM 132 165810 - 165834 + r 79 -12.1 -3.56727 | opp_overlap 165786, overlap 165811 165821 CCATGGCGGGCGGGA TGCCGGGCG CCTGAAA CGCCCGGCG TTGTCATTCATTGCG TERM 133 165811 - 165833 + r 76 -13.4 -2.73554 | opp_overlap 165786, overlap 165810 165821 CATGGCGGGCGGGAT GCCGGGCG CCTGAAA CGCCCGGC GTTGTCATTCATTGC RHE_PB00150 167116 - 165842 - | sugar ABC transporter, substrate-binding protein TERM 134 166903 - 166931 + g 77 -12.6 -3.56092 | gap 1, overlap 166888 166868 CGCCCGCGGCACAGG CAGCCAGCGTCTT GTCG AAGAC-CTGGCTG TTTCCGAGGTCCTCC RHE_PB00151 167290 - 168123 + | AraC family transcriptional regulator TERM 135 168150 - 168123 - T 76 -13.5 -2.82623 | overlap 168120 CGCCTTTCAGAACTA GCTGCGATCGG TTCCGG CCGATCGCAAC GGGTCGACGCCAGAC RHE_PB00152 168707 - 168120 - | putative glyoxalase protein TERM 136 169192 - 169214 + G 86 -13.4 -3.85256 | opp_overlap 169181 169180 169192 AAACGGTTCAAGGTA GATGCCGGGC GTC GCCCGACATC TTCTCTTTGACTATG TERM 137 169214 - 169192 - g 76 -15.6 -2.53392 | opp_overlap 169192, overlap 169181 169180 AAACGGTTCAAGGTA GATGCCGGGC GTC GCCCGACATC TTCTCTTTGACTATG RHE_PB00153 168715 - 169224 + | putative N-acetyltransferase protein RHE_PB00154 170382 - 169315 - | oxidoreductase protein RHE_PB00155 171403 - 170393 - | oxidoreductase protein TERM 138 171340 - 171323 - G 73 -12.7 -3.18735 | opp_overlap 171320 171331, overlap 171314 GCAATAGCCGACGAA CTCGCCG CCTG CGGCGAG CAGTCCCTTTACGTG RHE_PB00156 171763 - 172923 + | hypothetical protein bhbA 175108 - 172970 - | methylmalonyl-CoA mutase TERM 139 173671 - 173688 + g 74 -12.7 -3.26722 | overlap 173669 CGATGCGGCGGATCT GCGCGGT GCGC ACCGCGC TGTTGTCGATCTCCA RHE_PB00158 175836 - 175237 - | amino acid ABC transporter permease RHE_PB00159 176956 - 175871 - | putative amino acid ABC transporter, ATP-binding protein TERM 140 176455 - 176429 - G 74 -12.2 -3.49618 | opp_overlap 176436 GTCTGATAGAAGTAA GGCCGGGCGC GCCGCCA GCGCCCGGGC GATGCCGACGCGTTG TERM 141 176436 - 176467 + g 82 -11.4 -4.06419 | opp_overlap 176429 AGAAGTAAGGCCGGG CGCGCCGCCAGCGC CCGG GCGATGCCGACGCG TTGTTTCTGGCCGCC TERM 142 176659 - 176679 + g 74 -14.7 -2.56432 | opp_overlap 176653 176651 176650, overlap 176658 176677 GAAAGATCATGCCGA TGCGGCCGC GCA GCGGCTGCA GTTCCTGCTCTTGAA TERM 143 177018 - 176974 - R 88 -15 -3.53091 | gap 1, opp_overlap 176981 177001, overlap 176976 176981 ACTTTTCCCTGCAAA TACTG-AAGGCGGCCCCGGCA GGAA CGCCCGGGCCGCCTTTCGGCA GGCCTTAACCGCGGC TERM 144 177015 - 176976 - R 87 -15.6 -3.34398 | opp_overlap 176981 177001, overlap 176974 176981 TTTTCCCTGCAAATA CTGAAGGCGGCCCCGGCA GGAA CGCCCGGGCCGCCTTTCG GCAGGCCTTAACCGC TERM 145 177010 - 176981 - R 95 -18.5 -3.24021 | opp_overlap 176981 177001, overlap 176976 176974 CCTGCAAATACTGAA GGCGGCCCCGGCA GGAA CGCCCGGGCCGCC TTTCGGCAGGCCTTA TERM 146 176981 - 177010 + r 95 -17.8 -3.53761 | opp_overlap 176981 176976 176974, overlap 177001 CCTGCAAATACTGAA GGCGGCCCCGGC AGGAAC GCCCGGGCCGCC TTTCGGCAGGCCTTA RHE_PB00160 177884 - 177045 - | amino acid ABC transporter substrate-binding protein TERM 147 177832 - 177803 - G 73 -3.5 -4.81249 | gap 1, overlap 177804 177818 177820 CGGCAAAGGTAAAAA GTGCAGCCG-CG GAAACAG CGACGGCCGCAA GAGCCGCGCGGCGCG TERM 148 178105 - 178080 - R 71 -8.3 -3.87075 | gap 1, opp_overlap 178084, overlap 178084 AGCATGCTCTAGAAA GAAACGTC-GCC TGC GGCCGCCGTTTC CTATGACGGCGGCTT TERM 149 178130 - 178084 - R 76 -6.5 -4.55295 | gap 1, opp_overlap 178084, overlap 178080 178125 TGCTCTAGAAAGAAA CGTC-GCCTGCGGCCGCCGT TTCCTATG ACGGCGGCTTAAGACCGACG GAATTCGCCGACCGT RHE_PB00161 179393 - 178191 - | fosmidomycin antibiotic resistence permease protein TERM 150 178770 - 178784 + g 71 -9.2 -3.79021 | opp_overlap 178745, overlap 178761 178780 CGGCAGCGGCAGAGT CCGGCT GAC GGCCGG TTTGCTGGCGTTTTG TERM 151 179102 - 179083 - G 70 -10 -3.58522 | gap 1 AGCAGCAGCGCGAAA CTGC-CGGC ATT GCCGAGCAG AATGAGACCGCAAAA RHE_PB00162 179844 - 180188 + | Cro/CI family transcriptional regulator TERM 152 180541 - 180575 + F 81 -10.8 -4.17089 | opp_overlap 180541, overlap 180553 AGAATCGGCGCTAAA TGCGGTTTCAAAGCGC GTA GAGCTTTTAAATCGCA TTTTCGAGATTTCCA repAb 180590 - 181804 + | plasmid partitioning protein RepAb TERM 153 182215 - 182229 + G 71 -5.7 -4.32034 | TCCCGAGAGGGAGGG GCGAT ATCAG ATCGC TTTTGGTCATCGTCG repBb 181847 - 182896 + | plasmid partitioning protein RepBb TERM 154 182941 - 182903 - f 83 -8.9 -4.5774 | gap 1, overlap 182908 GATCAATAAGCAAAA GAAAAGGCCCCCG-AACG TTGC CGTCGCGGAAGCCCTCTC TGATCTAGACACCCA TERM 155 182936 - 182908 - f 91 -7.4 -5.19998 | gap 1, overlap 182903 ATAAGCAAAAGAAAA GGCCCCCG-AACG TTGC CGTCGCGGAAGCC CTCTCTGATCTAGAC repCb 183046 - 184338 + | plasmid replication protein RepCb SEQUENCE gi|86360045|ref|NC_007764.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence (length 250948) RHE_PC00001 407 - 84 - | hypothetical protein RHE_PC00002 688 - 407 - | hypothetical protein TERM 1 789 - 799 + H 75 -2.4 -5.10767 | overlap 767 787 TGAAGTCGCGTTTCA GCTG CGG CTGC TTTTTCTCTTCAATG TERM 2 1012 - 1023 + G 76 -5.8 -4.65895 | overlap 1002 CCGGGCCGAGGAACT CGGT TATC ACCG TTTTTGGGTCGCCGA RHE_PC00003 905 - 1897 + | putative oxidoreductase protein RHE_PC00004 1922 - 3271 + | putative nitrilotriacetate monooxygenase protein component A TERM 3 4176 - 4203 + G 73 -8.5 -4.08945 | gap 1, opp_overlap 4167, overlap 4147 CCGAAAGCTTCGGCG CCGAGGCGGATG TGAAT TATC-GCCTCGG TTTTCCGGCGCTGAT RHE_PC00005 3290 - 4489 + | hippurate hydrolase protein RHE_PC00006 4498 - 5049 + | acetyltransferase protein TERM 4 5987 - 6000 + G 86 -6.7 -5.03145 | overlap 5957 GAAATCCGACGCCGC TGCCT TTCC AGGCA TTTTTTGAACGCTTC RHE_PC00007 5080 - 6855 + | amino acid ABC transporter ATP-binding protein RHE_PC00008 6946 - 7890 + | amino acid ABC transporter substrate-binding protein RHE_PC00009 7890 - 8900 + | amino acid ABC transporter substrate-binding protein TERM 5 9630 - 9591 - g 70 -10.6 -3.65351 | gap 1 CCAGGCTGATTGAAA CCTATCGCGACTCGGGCAC GCA GCGCC-GCGTCGCGCTCGG CCGCGTCATCGTGCC RHE_PC00010 8918 - 9952 + | oxidoreductase protein RHE_PC00011 10020 - 10616 + | 2-hydroxychromene-2-carboxylate isomerase protein RHE_PC00012 10725 - 11285 + | NAD(P)H-dependent FMN reductase protein RHE_PC00013 11320 - 11508 + | hypothetical protein RHE_PC00014 11848 - 12429 + | hypothetical protein RHE_PC00015 12419 - 12748 + | hypothetical protein TERM 6 13276 - 13313 + G 100 -18.5 -3.54459 | opp_overlap 13305 ACATGGCTTCGTGCG CGCGCTGGTCTTTTGGG CCGG CCCGAAAGGCGAGCGCG TTTCCCGCAGATTGC RHE_PC00016 12923 - 13522 + | hypothetical protein TERM 7 13517 - 13559 + T 100 -15 -4.32201 | gap 1, overlap 13486 GAGGTTGCGCCAAGC CGTT-AAGCGCCGTGCGTC CTTTCA GACCCACGGCGCTTTGACG TTTTGAATTGCTTGC tauC 14366 - 13581 - | taurine uptake ABC transporter, permease protein TERM 8 14344 - 14365 + g 70 -7.2 -4.09739 | GCCACCGTTGATCTC TCGCCGGC GCCGAA GCCGGCCA TTTTCACCAGCTTGA tauB 15220 - 14432 - | taurine uptake ABC transporter, permease protein TERM 9 15022 - 14981 - G 75 -12.2 -3.53811 | gap 1, overlap 14983 14986 CGCATCTTTCTGAAA GACGACGCCG-CGATCGGC GCCCG GCCGTTCGACGGCGCGGCC GTCGAGCGTGATCCG TERM 10 15019 - 14983 - G 72 -12.3 -3.34715 | overlap 14981 14986 CATCTTTCTGAAAGA CGACGCCG-CGATCGGC GCCCG GCCGTTCGACGGCG-CG GCCGTCGAGCGTGAT TERM 11 15017 - 14986 - G 74 -13.7 -2.84325 | gap 1, overlap 14983 14981 CTTTCTGAAAGACGA CGCCG-CGATCGGC GCCCG GCCGTTCGACGGCG CGGCCGTCGAGCGTG TERM 12 15231 - 15278 + r 73 -12.6 -2.56715 | overlap 15228 AGCATGGTGCCACTC GCAAGTTTGATGCCGGCGCGAC GATG GTCGCGCCGGCATCGGAGAGGA TCAGTTGCTGACGCT tauA 16292 - 15279 - | taurine uptake ABC transporter, substrate-binding protein RHE_PC00020 16494 - 17864 + | hypothetical protein RHE_PC00021 18010 - 18705 + | GntR family transcriptional regulator TERM 13 18795 - 18758 - f 83 -14.1 -3.29144 | opp_overlap 18751 18762 18763, overlap 18759 GCAGGCCGCCGACAA GGCGCTGTCGCATCGAC AATT GTCGATGCCACTGCGCA TAGGCAATTACATTC TERM 14 18794 - 18759 - f 86 -17.6 -2.57344 | opp_overlap 18751 18762 18763, overlap 18758 CAGGCCGCCGACAAG GCGCTGTCGCATCGAC AATT GTCGATGCCACTGCGC ATAGGCAATTACATT RHE_PC00022 18978 - 19580 + | hypothetical protein TERM 15 19845 - 19830 - g 70 -10.4 -3.63627 | TGGCGAGAGCGCAAA GCTGCC TGCG GGCAGC CGCCTCGAGGAGTTT RHE_PC00023 19597 - 20439 + | hydrolase protein RHE_PC00024 20436 - 21371 + | flavoprotein oxidoreductase protein TERM 16 21802 - 21820 + G 72 -2.4 -4.70879 | gap 1, overlap 21805 CATATGGGCTGGCGA CTACGCC CATGAC GGCG-AG TTTTTCAAATTTCCC RHE_PC00025 21368 - 22408 + | monooxygenase protein dhaS 22413 - 23876 + | aldehyde dehydrogenase protein RHE_PC00027 23881 - 24204 + | hypothetical protein RHE_PC00028 24254 - 25264 + | polyamine ABC transporter substrate-binding protein TERM 17 25309 - 25283 - f 83 -14.4 -3.28708 | overlap 25285 25298 GAAACTCGAGATGAA CAGGCACGGCGA AGA TCGCCGTGCCCC ACGGCGCCGGTGCCA TERM 18 25307 - 25285 - f 95 -19.2 -3.20345 | overlap 25283 25298 AACTCGAGATGAACA GGCACGGCGA AGA TCGCCGTGCC CCACGGCGCCGGTGC RHE_PC00029 25379 - 26251 + | polyamine ABC transporter permease TERM 19 26822 - 26834 + G 76 -9.1 -4.09243 | overlap 26810 26826 CACGCTTCCGGCGAT CAGCC ATG GGCTG TTTTCGGCCGCTGTC RHE_PC00030 26253 - 27053 + | polyamine ABC transporter permease RHE_PC00031 27050 - 28129 + | polyamine ABC transporter ATP-binding protein gabDc 28140 - 29594 + | succinate-semialdehyde dehydrogenase protein TERM 20 30134 - 30153 + G 82 -15 -3.28712 | opp_overlap 30127 30126 CGAAACAGGCAGCCA CGGCGGCA GCAT TGCCGCCG TTATCGAGGGCAGGG RHE_PC00033 29652 - 30476 + | hypothetical protein TERM 21 31020 - 30999 - g 70 -12.3 -3.18571 | gap 1, overlap 30997 30995 TGCTGCAAAGAGAGA TCGCGCCCGC GAT GCGGGC-CGA AGACAGCGAATTCGT RHE_PC00034 30830 - 31081 + | hypothetical protein TERM 22 31075 - 31101 + F 74 -6.6 -4.37092 | opp_overlap 31031 CCGCCGTAACAAGCG TCGATAAGCC TGATGGT GGCCTATCGA TTTTATCCGCGCGCT RHE_PC00035 31087 - 31437 + | hypothetical protein TERM 23 31465 - 31481 + T 70 -10.1 -3.53811 | TCGGTCGGTGGGATT GCTCCTC GAG GAGGGGC TTTAACCGGACTCAG RHE_PC00036 32470 - 31493 - | sugar ABC transporter, ATP-binding protein TERM 24 31564 - 31554 - G 76 -8.2 -4.11394 | ATGCCAGGCGCAAAA GGCG TTT CGCC TTCGGCGCGCACGAC RHE_PC00037 33302 - 32475 - | sugar ABC transporter, substrate-binding protein TERM 25 32946 - 32924 - G 70 -7.6 -4.08216 | overlap 32943 CGATGTCCTGCAAAA GGCCGATGGT GGG AACAACGGCC GGCGGCATCATCAGG TERM 26 33280 - 33245 - G 73 -13.2 -3.17794 | opp_overlap 33271, overlap 33243 33246 AAGGCATGACGAAGA CGACGGCCGCGACGGC AAGG GCTATCGCGCCCGTCA GATAGGGGCGGACGC TERM 27 33279 - 33246 - G 74 -14.5 -2.50195 | opp_overlap 33271, overlap 33245 33243 AGGCATGACGAAGAC GACGGCCGCGACGGC AAGG GCTATCGCGCCCGTC AGATAGGGGCGGACG RHE_PC00038 34177 - 33299 - | sugar ABC transporter, permease protein TERM 28 33470 - 33456 - G 73 -8.5 -3.97388 | ACATCGGAGGAGAAA CCGGG TCCGC CCCGG GTCATGGCCCAGATC TERM 29 33746 - 33709 - G 77 -2.6 -5.08824 | gap 2, overlap 33710 33711 GGGCCACCGAAAAAA GCGCGAGCGCCGGATTGG TCAG CCATCCCGGC-C-CAGGC ATTCCAAGCGTCTCG TERM 30 34198 - 34219 + r 71 -11.5 -3.05384 | opp_overlap 34198 CCTCTTCAGGGGAAA CCTCGCCCC GTCA GGAGCGAGG TTAGCTGGCCCGAAC TERM 31 34219 - 34198 - R 84 -13.7 -3.59979 | opp_overlap 34198 CCTCTTCAGGGGAAA CCTCGCCCC GTCA GGAGCGAGG TTAGCTGGCCCGAAC TERM 32 34252 - 34272 + r 84 -13.3 -3.54741 | CCGCTACCAGTTGGG CAGGCCGAG CTG CTTGGCCTG TTTGCGCACATCCTC RHE_PC00039 35520 - 34240 - | sugar ABC transporter, substrate-binding protein RHE_PC00040 37879 - 35558 - | putative alpha-L-rhamnosidase protein TERM 33 37898 - 37927 + H 100 -10.9 -5.40072 | GTTCTCCCGACGAGT TGTAGAACGTTCT CCAT ATAACGTTCTACA TTTTTTTCGGAAGCG RHE_PC00041 38022 - 39080 + | LacI family transcription regulator TERM 34 39124 - 39096 - T 79 -12.4 -3.54424 | gap 1 GGCGAGGGTTGGAAA GGCCGGCA-GCCC ATGT GCGCTTGCCGGCC TCGCAGTCTCAGGCG RHE_PC00042 40044 - 39133 - | dihydrodipicolinate synthetase protein TERM 35 40668 - 40682 + G 71 -5.6 -4.29508 | TGCTCGACGAGGGCC GGCGCA TCC TTCGCC TTTATTACTCTGCCT RHE_PC00043 40175 - 40879 + | AsnC/GntR family transcriptional regulator protein TERM 36 40967 - 40985 + F 76 -6.6 -4.62069 | overlap 40965 40971 GCGGCACTGACACGC CGCTTGCC GCC GGCATGTG TTTTTCCAATGAACC TERM 37 41104 - 41156 + F 95 -11.3 -4.65895 | gap 2, overlap 41091 41105 GGCGGCCGGACCGAC CGAGCCGT-TCT-CCTGAGCGGGCG CCGTC CGCCCGCTCAGGCAGCTGCACCTCG TTTTTGAATGCCGAC TERM 38 41105 - 41152 + F 78 -14.1 -2.55361 | gap 1, overlap 41091 41104 GCGGCCGGACCGACC GAGCCGTTCTCCTGAGCGGGCG CCGTC CGCCCGCTCAGGC-AGCTGCAC CTCGTTTTTGAATGC ilvDc 41485 - 43227 + | dihydroxy-acid dehydratase RHE_PC00045 43238 - 43957 + | hypothetical protein RHE_PC00046 44845 - 44447 - | hypothetical protein RHE_PC00047 44911 - 45531 + | [acyl-carrier-protein] phosphodiesterase protein RHE_PC00048 45571 - 46215 + | hypothetical protein RHE_PC00049 46317 - 46682 + | hypothetical protein RHE_PC00050 46714 - 47241 + | oxidoreductase protein RHE_PC00051 47323 - 47934 + | polyketide synthase protein RHE_PC00052 48904 - 48011 - | thioredoxin reductase protein TERM 39 48723 - 48705 - G 70 -10.2 -3.62597 | TTGACCGTGGAATAA CGCGTCAG TTG CTGCCGCG CCTCAGCCAGGATGT RHE_PC00053 49044 - 49757 + | TetR family transcriptional regulator TERM 40 50541 - 50563 + G 70 -11.9 -3.15579 | TCAGCCCGACGACGT CCGCGCCCG CGCCT CGGTCGCGG TTCGTGCCGCCTTCG RHE_PC00054 49792 - 50655 + | methyltransferase protein RHE_PC00055 54288 - 51136 - | efflux cation transporter protein TERM 41 54251 - 54238 - G 72 -2.3 -4.77036 | overlap 54246 GGTCAGCATCAAAAA CAGCA ATAT CGCCG GTACGGGATTGCGGA TERM 42 54276 - 54291 + g 74 -2.6 -4.83615 | gap 1, opp_overlap 54276 TGCGGATCGACCAAG CTGA-GA AGT TCATCAG TTTTTCTCCGCAATC RHE_PC00056 55388 - 54288 - | efflux cation transporter protein RHE_PC00057 55707 - 56393 + | two-component response regulator protein TERM 43 56442 - 56462 + G 74 -11.9 -3.45023 | overlap 56440 TTATTTGGCTGACGC TGGCGGCAA GCC TTGCTGCCA TTATCCTCATCGTCA RHE_PC00058 56390 - 57685 + | two-component sensor histidine kinase protein nodTc 57802 - 59253 + | nodulation protein citEc 60098 - 59262 - | citrate lyase, beta subunit protein TERM 44 60025 - 60041 + g 76 -9.3 -4.08692 | AGGATGACGGCATCG GCGCCCG AGG CGAGCGC TTTTGCGAAACGTTC RHE_PC00061 60547 - 60095 - | putative amine oxidase protein mccB 62409 - 60547 - | methylcrotonoyl-CoA carboxylase biotinylated subunit protein TERM 45 61280 - 61265 - G 74 -4.6 -4.62336 | overlap 61267 ATCGGATCGTAAAAA GCGGTG ATCT CATCGC CCTCAACGACGCCGC mccA 64023 - 62419 - | methylcrotonoyl-CoA carboxylase non-biotinylated subunit protein ivdH 65171 - 64026 - | isovaleryl-CoA dehydrogenase protein TERM 46 64153 - 64116 - G 74 -4.8 -4.56597 | gap 2 GGCGTCGCGCAAAAA GCGCTCGACCGGCCATTC CTTG GTATAGCCGG-CGC-CGC CAAGCGCCTGGATCG TERM 47 64855 - 64876 + g 76 -10.1 -3.90112 | opp_overlap 64843 TGACGGCGCTTCTGC TCCGCCGAT CCCC AGCGGCGGA TTTGATTGACGCAGA RHE_PC00065 65451 - 66002 + | hypothetical protein RHE_PC00066 67062 - 65986 - | AraC family transcriptional regulator TERM 48 67793 - 67821 + G 75 -11.8 -3.54741 | gap 2, overlap 67801 67802 GCCAGAGCGTGCCCT TTCCGCC-GC-GGC TCG GCCGGCCGGCGGAA TTTGCCGGGCTGGTG RHE_PC00067 67147 - 67914 + | 3-hydroxyacyl-CoA dehydrogenase protein TERM 49 68331 - 68305 - g 72 -12.3 -3.26473 | GGAAAGCATGACCAA CGCGCCCTATC TCCTT GATAGGGCCCG CGGCGGCTACAGGCT RHE_PC00068 67937 - 69124 + | thiolase protein RHE_PC00069 69142 - 70269 + | acyl-CoA dehydrogenase protein TERM 50 70385 - 70401 + G 74 -5 -4.58395 | overlap 70386 GAACCCGCCGTCCGC CCGGGC GGCCA GCCCGA TTTTTCCAACGTCAA bkDa1 70334 - 71566 + | 2-oxoisovalerate dehydrogenase alpha subunit protein bkDa2 71568 - 72581 + | 2-oxoisovalerate dehydrogenase beta subunit protein bkdB 72585 - 73826 + | branched-chain alpha-keto acid dehydrogenase subunit E2 lpdAc 73830 - 75227 + | dihydrolipoamide dehydrogenase RHE_PC00074 75453 - 75788 + | hypothetical protein RHE_PC00075 76857 - 76096 - | stomatin-like protein nfeD 78227 - 76887 - | membrane protein for nodulation competitiveness RHE_PC00077 79760 - 78468 - | hypothetical protein TERM 51 78909 - 78891 - G 76 -6.6 -4.47183 | GATGACGGAAACAAA CCGCGAGC GCA GGTCACGG ATCGACCCGAACGTG ugpBc 80221 - 81543 + | sn-glycerol-3-phosphate ABC transporter, substrate-binding protein TERM 52 82162 - 82207 + G 100 -17.5 -4.58663 | opp_overlap 82173 AATCCGTGCCGCGCT CGCTTCAGGAAGCCGGCGCCA TCGA TGGCGCCGGCCCGGTGAAGCG TTTTTGGACGATCGT TERM 53 82196 - 82173 - g 95 -19.6 -3.14132 | opp_overlap 82162 CGCTCGCTTCAGGAA GCCGGCGCCA TCGA TGGCGCCGGC CCGGTGAAGCGTTTT ugpAc 81603 - 82487 + | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 54 82983 - 82994 + G 75 -4.4 -4.76041 | GCGACGGCCACCTTC CTGT TTCG ACAG TTTTTCCTCACTGTG ugpEc 82500 - 83348 + | sn-glycerol-3-phosphate ABC transporter, permease protein TERM 55 83761 - 83811 + G 74 -5.2 -4.64861 | gap 1, overlap 83757 83763 83763 GAATTGTCGGGGGGA CAGCGCCAGCGCGTTG-CGATGG GACGAG CCATCGTCCGCGAGCCGGCGGCG TTTCTTTTCGACGAG ugpCc 83350 - 84396 + | glycerol-3-phosphate transporter ATP-binding subunit ugpQ 84465 - 85214 + | glycerophosphoryldiester phosphodiesterase protein glpRc 85224 - 86009 + | glycerol-3-phosphate transcriptional regulator protein RHE_PC00084 86006 - 86800 + | hypothetical protein RHE_PC00085 87823 - 86942 - | sugar ABC transporter, permease protein RHE_PC00086 88947 - 87850 - | sugar ABC transporter, permease protein RHE_PC00087 90464 - 88944 - | sugar ABC transporter, ATP-binding protein RHE_PC00088 91568 - 90468 - | hypothetical protein RHE_PC00089 92968 - 91589 - | hydrolase protein gstc 93629 - 92970 - | glutathione S-transferase protein RHE_PC00091 94456 - 93626 - | hypothetical protein TERM 56 94176 - 94143 - G 73 -6.6 -4.30014 | TGGACGAAGGGAAAA TGCGCGATGTCGAG GAAATT CTCGACTGCTCGCA GGGGGGAGCAGCGTA RHE_PC00092 95112 - 94471 - | oxidoreductase protein RHE_PC00093 95525 - 95232 - | hypothetical protein TERM 57 95962 - 95974 + H 74 -6.9 -4.4078 | overlap 95963 CATCACGGGCCGACT TGCCG CGC CGGCG TTTTGCTTGACCGCA TERM 58 101290 - 101279 - g 71 -5.8 -4.28548 | opp_overlap 101279 101278 101288 AGCTATCGACGAAAA GTCG CTAG CGAC ATTGGTGGATCGCGT RHE_PC00094 96282 - 102188 + | serine/threonine kinase protein nodW 102240 - 102866 + | two-component nodulation response regulator protein RHE_PC00096 103138 - 103353 + | hypothetical protein RHE_PC00097 104465 - 103524 - | insertion sequence transposase protein RHE_PC00098 105714 - 104788 - | ribokinase protein fucUc 106172 - 105711 - | fucose dissimilation pathway protein RHE_PC00100 107335 - 106295 - | LacI family transcription regulator RHE_PC00101 108273 - 107362 - | sugar ABC transporter, permease protein RHE_PC00102 109391 - 108273 - | sugar ABC transporter, permease protein TERM 59 109416 - 109448 + r 75 -8.9 -4.06678 | opp_overlap 109415 109414 109412, overlap 109417 TCGCCGGACAAGATG GGCGCCGGCGGAGCC TTT GAGTCCGCCAGCGCG TTTATGTCAATCGAT TERM 60 109417 - 109447 + r 73 -12.4 -3.03525 | opp_overlap 109415 109414 109412, overlap 109416 CGCCGGACAAGATGG GCGCCGGCGGAGCC TTT GAGTCCGCCAGCGC GTTTATGTCAATCGA RHE_PC00103 111103 - 109463 - | sugar ABC transporter, substrate-binding protein TERM 61 111222 - 111211 - H 74 -3 -5.00196 | opp_overlap 111211 TGGTAAACAAGAAAA TGAA ACGT TTCA TAATTCTTGTTCGAA TERM 62 111310 - 111299 - H 88 -3 -5.52096 | AAAGTCAATAAAAAA TGAA ACGT TTCA TGGAGGAGGTTCGAA RHE_PC00104 111441 - 112508 + | sugar ABC transporter, ATP-binding protein adhA1 113489 - 112590 - | alcohol dehydrogenase protein TERM 63 114043 - 114023 - g 76 -12.5 -3.40788 | ACCGAATTCAAGGAA GGCGATGCC GTC GGCGTCGCC TGGCTGCACGATGCC adhA2 113786 - 114844 + | alcohol dehydrogenase protein RHE_PC00107 115092 - 115814 + | hypothetical protein TERM 64 115872 - 115848 - f 73 -5.5 -4.56597 | opp_overlap 115853 115856 GGGGCGCCGCAAAAA GCGGAAGCCGG CAC CCGCCGTTCGC GATGGCGCCGGCCGT RHE_PC00108 115974 - 116588 + | hypothetical protein RHE_PC00109 117523 - 116699 - | putative universal stress UspA protein RHE_PC00110 117739 - 118059 + | putative DnaK suppressor protein RHE_PC00112 119094 - 119549 + | hypothetical protein TERM 65 119621 - 119587 - T 70 -10.8 -3.34398 | gap 1, opp_overlap 119576 119588, overlap 119585 119590 119592 GGGGCGGTTCAAAGA TTACAGCGCTGCGGG GCGGCT CCTGCAGCGCTG-AA TTGTCGTGGTGTTAT TERM 66 119588 - 119621 + T 88 -15.3 -3.47709 | opp_overlap 119587 119585 119590 119592, overlap 119576 GGGCGGTTCAAAGAT TACAGCGCTGCGGGG CGGC TCCTGCAGCGCTGAA TTGTCGTGGTGTTAT TERM 67 119619 - 119590 - T 81 -15 -2.84325 | opp_overlap 119588 119576, overlap 119587 119585 119592 GCGGTTCAAAGATTA CAGCGCTGCGGG GCGGCT CCTGCAGCGCTG AATTGTCGTGGTGTT TERM 68 119617 - 119592 - T 73 -11.8 -2.97021 | opp_overlap 119588 119576, overlap 119590 119587 119585 GGTTCAAAGATTACA GCGCTGCGGG GCGGCT CCTGCAGCGC TGAATTGTCGTGGTG RHE_PC00113 120405 - 119704 - | putative universal stress UspA protein RHE_PC00114 120691 - 121017 + | hypothetical protein TERM 69 121107 - 121139 + F 71 -7.6 -4.06502 | overlap 121088 121089 TGCTGACGGGTGCCT GCGGCGGTATCGTC TCCTC GACGGCACTGACGC TTTCCTTTGCCCGTC RHE_PC00115 121202 - 121516 + | hypothetical protein RHE_PC00116 122232 - 121648 - | hypothetical protein TERM 70 121763 - 121706 - G 74 -4.7 -4.66163 | gap 1, opp_overlap 121752, overlap 121709 AGCTGGACGGAAAAA CGATCGTGCAGCAGTTCCAGCGACGCGT CAT AAGTGTCGTCGGCGCTGCTGCA-GACAG CATCCTTCAGCAGGA RHE_PC00117 124661 - 122289 - | putative kinase/esterase protein RHE_PC00118 124785 - 125591 + | amino acid ABC transporter substrate-binding protein TERM 71 125621 - 125650 + T 73 -8.6 -4.13767 | gap 1, overlap 125621 125624 TTCGTGTGACTGCTG C-GAGATGGCCGG TTTTC CCAGCCATCTCCG TTTTGAGCTAAAGCG RHE_PC00119 126890 - 125700 - | glutathione-independent formaldehyde dehydrogenase protein TERM 72 125849 - 125868 + g 71 -9.2 -3.81488 | opp_overlap 125849 ACCGGTCGTGGAGAA TCGCCTGC ATGA GCTGGCGA TTATATTTGAGCACC TERM 73 126424 - 126436 + g 76 -9.1 -4.09739 | TTCGCCATCGCCTTA TCCCG ATC CGGGA TTTTCAGCAGGTTGA RHE_PC00120 127382 - 127086 - | hypothetical protein TERM 74 127918 - 127933 + G 72 -4 -4.61566 | gap 1 CAGCGATGAGCAATT GCACGAC CTG GTC-TGC TTTTGTCATTTCGGG RHE_PC00121 127613 - 128047 + | hypothetical protein RHE_PC00122 129134 - 128202 - | hypothetical protein RHE_PC00123 129198 - 130079 + | LysR family transcriptional regulator RHE_PC00124 131046 - 130057 - | AraC family transcriptional regulator TERM 75 131272 - 131254 - g 75 -14.6 -2.72661 | overlap 131256 CATTACTCCCAAGCA GATCGCGG ATT CCGCGATC GACGCCGCCAAGGCT RHE_PC00125 131153 - 132055 + | hypothetical protein RHE_PC00126 132063 - 133553 + | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase RHE_PC00127 133564 - 134724 + | acyl-CoA dehydrogenase protein TERM 76 134790 - 134769 - gf 77 -11.5 -3.63627 | TGCTCAGACCTCAAA CGATCGCCG TCTT CGGCGGTCG CGAGGCGCGCAGGGT TERM 77 136196 - 136230 + GF 100 -15.7 -4.91109 | gap 1 AAGACGGAACTTGCT GCCTGCGGCCTCCCTG TTCC CTGGG-GGCTGCAGGC TTTTTCTCCTCGCGA TERM 78 136260 - 136272 + GF 79 -9.1 -4.15833 | overlap 136247 AAGCCGCCGAGCAGG CCGAG CGG CTCGG TTTTCCCGTCGTGCT TERM 79 136580 - 136552 - gf 72 -7.3 -4.15044 | opp_overlap 136561 GCTGCCCGCAACAAA GGCCGAAATTCGC GAC GCGCTTTTGGGCC TCAAGATTGCTAAGG TERM 80 136694 - 136684 - gf 77 -2.4 -5.02476 | ATATGTCGTAAAAAA TGCG GTG CGCC TGGAGGAACTGGACC RHE_PC00128 134729 - 136783 + | acyl-CoA synthetase protein RHE_PC00129 136758 - 137573 + | carnitinyl-CoA dehydratase RHE_PC00130 137607 - 139280 + | peptide ABC transporter, substrate-binding protein TERM 81 139404 - 139430 + G 76 -7.3 -4.32201 | gap 2, opp_overlap 139386 139403 139404, overlap 139404 139405 TGCCCCAAGCAATAT C-TTGCCGG-GCC TGA GGCTCCGGCAGCG TTTTCCGTTGCTTGC RHE_PC00131 139378 - 140385 + | peptide ABC transporter, permease protein RHE_PC00132 140382 - 141209 + | peptide ABC transporter, permease protein TERM 82 141293 - 141236 - g 72 -2.6 -4.74103 | gap 3, opp_overlap 141285, overlap 141240 TTCGCAACCTAAAAA TCG-AGGCGACCAGCTATCCGCC-GGGCG AGC CGCCCAAGCGGGTTAC-GATCGTCGACGA CGTTTCCTTCGACCT TERM 83 141347 - 141379 + G 70 -11.9 -3.12351 | opp_overlap 141343 141344 TGATCGGAGAATCGG GCGCCGGCAAGTCGA CGA TCGGCCTCTCGGCGC TTGCCTATGGCCGCG RHE_PC00133 141202 - 142833 + | peptide ABC transporter, ATP-binding protein RHE_PC00134 143678 - 142893 - | Cro/CI family transcriptional regulator RHE_PC00135 143800 - 145377 + | peptide ABC transporter, substrate-binding-protein TERM 84 145979 - 146001 + G 73 -3.2 -4.72272 | overlap 145980 GGAAGGAGATGTGGC TGGAGCGCCT GGC AGGCGAACCC TTTTTCATGGAGGAG TERM 85 146078 - 146101 + G 72 -13.9 -2.73542 | TCTCGGAGGACTTTT CGAGCGTCG AGATCC CGACGCTCG TGATTGCCGGTTGGG RHE_PC00136 145399 - 147402 + | hypothetical protein RHE_PC00137 148317 - 147406 - | lipase/esterase protein TERM 86 148461 - 148471 + H 82 -2.4 -5.40072 | ATCCTGCATTTCCAG GGGC TTT GCCG TTTTTTTCAAAAACC TERM 87 148925 - 148976 + G 77 -14.5 -2.87132 | gap 3, overlap 148928 148928 ATATCGAACGCATTG TGGGCGGC-CGTGCG-CGCTTTGCCG GAA CGGCAATGCGACGC-CGTGCTGCTCG TCTATGGCGAAGGCC TERM 88 148928 - 148973 + G 75 -14.8 -2.69151 | gap 3, overlap 148925 148928 TCGAACGCATTGTGG GCGGC-CGTGCG-CGCTTTGCCG GAA CGGCAATGCGACGC-CGTGCTGC TCGTCTATGGCGAAG RHE_PC00138 148583 - 149104 + | RNA polymerase sigma-E factor TERM 89 149474 - 149440 - g 71 -10.7 -3.53343 | gap 1, opp_overlap 149443 149462, overlap 149441 AATGGGGTGGCGAAA CCGGCCGA-ACCTCGG CTTT CCGAAGCGCCGGCCGA AGAGAATCGGCCGGC TERM 90 151012 - 150967 - g 75 -14.7 -2.78463 | gap 1, opp_overlap 150962, overlap 150953 AGCGCCCTGATTACA GCGCCG-GTCGGTGACGGCAAC GCG GTCGCCACCATCGACGCCGCGC CTGAAGATGTTCGCT RHE_PC00139 149188 - 151203 + | hypothetical protein RHE_PC00140 152381 - 151455 - | gluconolactonase protein TERM 91 151690 - 151680 - G 72 -2.4 -4.72386 | GAAACCATCGAAAAA GCCC GCG GTGC ATTCGGCAAAAATGC TERM 92 152611 - 152591 - H 71 -8.3 -3.97622 | TGAGCCAAAAGACAA GCGTCTC AAGGGAG GAGACGC CCAAAAGCTGACGAT RHE_PC00141 152625 - 153632 + | LacI family transcription regulator idnD 154675 - 153644 - | L-idonate 5-dehydrogenase protein RHE_PC00143 155579 - 154686 - | D-2-hydroxyacid dehydrogensase protein TERM 93 154881 - 154859 - G 76 -7.6 -4.25104 | GCTCGTTGAGGAAAA CGTCAAGGCC TGC GGCCTGGATG GTGCGGTTCTGAAGC idnO 155763 - 156527 + | gluconate 5-dehydrogenase TERM 94 156841 - 156868 + G 88 -7.6 -4.83169 | opp_overlap 156843, overlap 156839 156845 CGGGACAGGCTGAGA CAGGCGGCGGGC GGGC GCCTGGCGTTTG TTTTTCTCGAAGGAT TERM 95 156845 - 156864 + G 86 -7 -4.96501 | opp_overlap 156843, overlap 156839 156841 ACAGGCTGAGACAGG CGGCGGGC GGGC GCCTGGCG TTTGTTTTTCTCGAA idnK 156583 - 157095 + | gluconate kinase protein TERM 96 157245 - 157208 - g 74 -4.9 -4.59773 | gap 3, opp_overlap 157233, overlap 157209 157228 CTCGATGCCGAAAAA GTCGCGGCGCTGGAAGCC AACGG GGCT-C--GCGCCGCGAG TTCCGTGGAGGATGC RHE_PC00146 157085 - 157978 + | 6-phosphogluconatedehydrogenase protein RHE_PC00147 158086 - 159582 + | sugar ABC transporter, ATP-binding protein TERM 97 159668 - 159647 - g 71 -9.4 -3.77831 | CGACCAAGAGCGAAA TGGCCGGC CTGTCC ACCGGCCA GAAGATCGGCCGCCT RHE_PC00148 159601 - 160641 + | sugar ABC transporter, permease protein TERM 98 160645 - 160660 + F 77 -10.4 -3.73224 | opp_overlap 160642 GCGTCCAAGTGAGGA TGCCGG CTCG CCGGCA TTTCATAACAAATAA TERM 99 160854 - 160836 - g 72 -11.6 -3.29511 | GGGACGGCCCGACAA GCGGCCCC AAG GGTGCCGC CGGCAAGAACATCGT RHE_PC00149 160691 - 161788 + | putative sugar ABC transporter, substrate-binding protein RHE_PC00150 161881 - 162219 + | hypothetical protein TERM 100 162254 - 162280 + F 78 -6.4 -4.70659 | opp_overlap 162242 162254 CAAGCTTGCAGAGAA GCGCCTGCGGAC AAG GATCTCAGGTGC TTTTTGCGTGTGCCG TERM 101 162920 - 162900 - g 72 -2.6 -4.68384 | gap 1, opp_overlap 162902, overlap 162895 ATGGACTGAAGAAAA TG-TCACCT GGGC AGGCGATCA TTTCCGGGTTGCCGA TERM 102 163143 - 163108 - g 83 -5.2 -5.08824 | overlap 163112 GGGCGACTTAAAAAA CTGAGCCGAGAGCTCG ACCG CGACCTCCCGCCGCTG GAATTCGGGCTGCGA RHE_PC00151 162457 - 163527 + | putative FMNH2-dependent aliphatic sulfonate monooxygenase protein RHE_PC00152 163980 - 163735 - | hypothetical protein TERM 103 164372 - 164361 - gR 72 -2.2 -4.73448 | ACATACAGGCAAAAA CCAA TCCC CTGG TCGCCCAGATCATCG TERM 104 165062 - 165040 - gR 78 -12.6 -3.29461 | overlap 165028 GAAGGTTGCCGAGAA CGCCAGCGCC ATT GCCGCCGGCG CACAGGAAATCCGTT TERM 105 165380 - 165406 + Gr 77 -11.4 -3.62096 | opp_overlap 165364 GCCGGCGTCGAGGCC GCCCGCGCCGGT GAA GCCGGCAAGGGC TTTGCCGTCGTCGCC TERM 106 165536 - 165511 - gR 72 -3.9 -4.62069 | CGGCCATGTCAAAAA CGGCGTCGC ACTGGTTG GCGAAACCG GAAAGGCCCTGCAGG mcpGc 163970 - 165940 + | methyl-accepting chemotaxis protein TERM 107 165970 - 165999 + Tr 95 -8 -5.37593 | opp_overlap 165965 165970 165972 165973, overlap 165973 165976 TGCTGAAAAATGAAA TAGCGA-GGGCAGC AATT GCTGCCCTTCG-TA TTTTTTGGTTTACGC TERM 108 165999 - 165970 - TR 77 -8 -4.32046 | opp_overlap 165970 165973 165976, overlap 165965 165972 165973 TGCTGAAAAATGAAA TAGCGA-GGGCAGC AATT GCTGCCCTTCG-TA TTTTTTGGTTTACGC TERM 109 165998 - 165972 - TR 71 -8.7 -3.7557 | gap 1, opp_overlap 165970 165973 165976, overlap 165970 165965 165973 CTGAAAAATGAAATA GCGA-GGGCAGC AATT GCTGCCCTTCGT ATTTTTTGGTTTACG TERM 110 165997 - 165973 - TR 71 -12.2 -2.84257 | gap 1, opp_overlap 165973 165970 165976, overlap 165972 165970 165965 TGAAAAATGAAATAG CGA-GGGCAGC AATT GCTGCCCTTCG TATTTTTTGGTTTAC TERM 111 165973 - 165997 + Tr 90 -12.2 -4.31698 | gap 1, opp_overlap 165972 165970 165965 165973, overlap 165970 165976 TGAAAAATGAAATAG CGA-GGGCAGC AATT GCTGCCCTTCG TATTTTTTGGTTTAC TERM 112 165976 - 165993 + Tr 81 -12.7 -3.67898 | opp_overlap 165973 165972 165970 165965, overlap 165973 165970 AAAATGAAATAGCGA GGGCAGC AATT GCTGCCC TTCGTATTTTTTGGT mctP 167484 - 166009 - | monocarboxylic acid permease protein RHE_PC00155 167908 - 167474 - | hypothetical protein mctR 168591 - 167920 - | two-component response regulator protein mctS 169973 - 168588 - | two-component sensor histidine kinase protein RHE_PC00158 170533 - 170069 - | AsnC family transcriptional regulator TERM 113 170652 - 170632 - H 91 -9 -5.12474 | opp_overlap 170632 170631 CAGAAGAGACAAAAA TTGCGCGA AAAAA CCGCGCAA CTTTATCATTATCCT TERM 114 170887 - 170872 - g 75 -11.8 -3.54459 | TCAATTTTCTGGAAA CGCCCG ATCG CGGGCG CGTCGCCGTCAACGG TERM 115 170949 - 170923 - g 83 -12.3 -4.07687 | AGGTCGCGCTGAAAA TCGGCCGCAGC GGGCG ACTGCAGCCGA AGAGCTGGCGGCAGA RHE_PC00159 170697 - 171476 + | amino acid ABC transporter ATP-binding protein RHE_PC00160 171524 - 172297 + | amino acid ABC transporter substrate-binding protein RHE_PC00161 172310 - 173035 + | amino acid ABC transporter permease RHE_PC00162 173047 - 173736 + | amino acid ABC transporter permease TERM 116 174131 - 174156 + G 72 -7.5 -4.11216 | overlap 174132 GGTTCGCTGCCGCCG ATCTTCGGCTC CTAC GAGCCGCAGAA TTTTCGGCCTGAGCG RHE_PC00163 173813 - 174721 + | homocysteine S-methyltransferase protein RHE_PC00164 175169 - 174813 - | MarR family transcriptional regulator TERM 117 175216 - 175237 + H 71 -4.3 -4.64676 | overlap 175217 AGCGCCTCATAATCC TCCTGTCTC AGCG GCGGCAGGG TTTTCTTCACACTCG TERM 118 175471 - 175494 + G 71 -10.9 -3.53012 | opp_overlap 175470 175469 ACCAACACAGCAACC GGCCGCACG ATTTCA CGGGCGGCC TTTCCCGGCGCGAGG TERM 119 175793 - 175762 - g 78 -2.9 -5.00616 | gap 1 TCGGGTCGGAAAAAA TTCG-CGGCCACGG CATTC CCGAGGCGATCGAA GCGATCCTGATCGGC RHE_PC00165 175446 - 177260 + | chloride channel protein TERM 120 177291 - 177327 + T 75 -13 -3.12351 | TCGCTGCCGCAACTG CCGCGCGTCGCATG ATCAGGTCC CATGCGGCGCGCGC TTGCGTCTGCGGCCC RHE_PC00166 178113 - 177343 - | aliphatic sulfonate ABC transporter ATP-binding protein TERM 121 177405 - 177454 + g 86 -12.8 -4.07568 | opp_overlap 177392 177391 ATTCCGGCGCGCTGC GGTCGCGCGGG-CGCGGCAGATCG ATGT CGATCAGGCGCGGCTCG-GCGCCC TTTTCCCGCGGCAGA TERM 122 177868 - 177852 - G 78 -15.1 -2.73875 | overlap 177849 GCTCCTGGAAGATGA CGGCGCG TTC CGCGCCG ACGCCGCGGATCGCC RHE_PC00167 179106 - 178123 - | aliphatic sulfonate ABC transporter substrate-binding protein RHE_PC00168 179996 - 179145 - | aliphatic sulfonate ABC transporter permease RHE_PC00169 181359 - 180007 - | monooxygenase protein TERM 123 181173 - 181120 - G 84 -13.7 -3.81848 | AAGAGCGGAGAACAA GGTGACGGGCTCGAAGCCGGCCACG CGGG CGTTGCCGCCTTCACGCGCTCCACC GAAACCGACGGCCAA RHE_PC00170 182564 - 181680 - | IclR family transcriptional regulator TERM 124 182536 - 182554 + g 100 -3.8 -5.52384 | overlap 182538 GTCAACCGATCCTGC TGTTCGCG GCC TGCGAAAA TTTTTTTCATCCCCC RHE_PC00171 182687 - 183757 + | sugar ABC transporter, substrate-binding protein TERM 125 183804 - 183794 - gf 72 -2.4 -4.69053 | opp_overlap 183797, overlap 183795 183796 CATGACGGAAGAAAA CCCG CTG CTGG AAGCCCGGCAGGTGT RHE_PC00172 183780 - 185294 + | sugar ABC transporter, ATP-binding protein RHE_PC00173 184942 - 187191 + | sugar ABC transporter, permease protein RHE_PC00174 187188 - 188144 + | hypothetical protein TERM 126 188978 - 188998 + G 73 -11.1 -3.60323 | overlap 188976 ATCCCGCCTGCCGTC TCGTGCTGC GCA GCGGCGCGA TCTTCTTTCATGATC RHE_PC00175 188167 - 189447 + | hypothetical protein RHE_PC00176 189483 - 189827 + | hypothetical protein RHE_PC00177 189860 - 190873 + | hypothetical protein RHE_PC00178 192054 - 190870 - | hypothetical protein TERM 127 191403 - 191383 - G 84 -15.4 -3.34013 | GAGTTCCGCAATGAA GCGCGCCG CCGAT CGGCGCGC ACCTTCGACCGGCAC menG 192823 - 192149 - | S-adenosylmethionine: 2-demethylmenaquinone methyltransferase protein RHE_PC00180 193753 - 192917 - | amino acid ABC transporter substrate-binding protein RHE_PC00181 194549 - 193785 - | amino acid ABC transporter ATP-binding protein TERM 128 194285 - 194267 - G 95 -10.2 -4.59853 | opp_overlap 194282 TGAAGTTCTGAAAAA CGAAGCCG ATC CGGCTGCG CATCGCGTTGAGTGC RHE_PC00182 195301 - 194546 - | amino acid ABC transporter permease TERM 129 195114 - 195100 - G 73 -7 -4.32678 | overlap 195102 GGGTGAAATAAACAA GGGCGG TGA CCGGCC AGCGCAGCAGTGGCG RHE_PC00183 195954 - 195298 - | amino acid ABC transporter permease RHE_PC00184 196775 - 196002 - | short chain dehydrogenase/reductase family oxidoreductase RHE_PC00185 197007 - 197912 + | LysR family transcriptional regulator aatAc 199127 - 197925 - | aspartate aminotransferase TERM 130 198574 - 198603 + g 77 -12.9 -3.6279 | gap 1 GCGATGGCGGCCATC TCCGCCCGGGAGCA GGC TGCTC-CGGTCGGA TTGTTCGGGAAATTT RHE_PC00187 199956 - 199189 - | hypothetical protein RHE_PC00188 200967 - 199978 - | hypothetical protein RHE_PC00189 201671 - 200964 - | hypothetical protein RHE_PC00190 202090 - 201668 - | hypothetical protein accCc 203481 - 202087 - | acetyl-CoA carboxylase, biotin carboxylase protein accBc 203900 - 203481 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 131 204277 - 204300 + r 74 -6.6 -4.37506 | opp_overlap 204282, overlap 204279 GCCATTCAGTTTTAT CACAACCCAC AAGG GTGGGTCGGG TTTATCTTTGGTGGT RHE_PC00193 205200 - 204598 - | hypothetical protein RHE_PC00194 206540 - 205209 - | hypothetical protein TERM 132 205766 - 205778 + g 74 -4.7 -4.56978 | AGCCACGCGCGAATT CGGCC ATC GTCCG TTTGTTGTTTGCCGA cyaFc 208510 - 206636 - | adenylate cyclase protein RHE_PC00196 209728 - 208706 - | LacI family transcription regulator TERM 133 209428 - 209475 + g 81 -7 -4.74215 | gap 1, overlap 209470 GCTCGGAGGCCTCGT CGC-GATCAAGGTTGGCGATCAT CAG ATTATAGCCGCCCTGGATCAGCG TTTTGTTGATGCTCT TERM 134 209893 - 209908 + H 83 -7.6 -4.77157 | opp_overlap 209893 GCTATCATCTAAGTA TGGCAA ACGA TTGCCA TTTTTAATACGTTGA TERM 135 210921 - 210940 + G 74 -9.2 -3.92373 | overlap 210922 CGGGCTCACGCTCGT CCGGCAGG CGCT CCTGCCGA TTTATCGCTGAGATC TERM 136 210922 - 210939 + G 70 -12.7 -2.95102 | overlap 210921 GGGCTCACGCTCGTC CGGCAGG CGCT CCTGCCG ATTTATCGCTGAGAT RHE_PC00197 209998 - 210951 + | putative myo-inositol catabolism protein RHE_PC00198 211009 - 212241 + | sugar ABC transporter, substrate-binding protein TERM 137 212285 - 212310 + F 71 -11.1 -3.12936 | gap 1, overlap 212286 CGACGCCACGGCTTC CGCGCTG-CGTG CTC CGCGGCGGCGCG TGTTCCGCTTTCCAT RHE_PC00199 212344 - 213231 + | sugar ABC transporter, permease protein RHE_PC00200 213231 - 214115 + | sugar ABC transporter, permease protein TERM 138 215084 - 215105 + G 76 -7.3 -4.37092 | gap 1 TCTGGTTCGACTGGA CGGAGCAGAG CCT CTC-GCTTCG TTTTATGGGCGACAT RHE_PC00201 214123 - 215205 + | sugar ABC transporter, ATP-binding protein TERM 139 216049 - 216026 - g 84 -4.4 -5.1675 | gap 1, opp_overlap 216027, overlap 216027 CCACGGACGAAAAAA CCGGCCGCGCC ACC GGCGCG-CAGT TTGTCGATCGCAATA RHE_PC00202 215290 - 216942 + | putative oxidoreductase protein RHE_PC00203 217172 - 218011 + | hypothetical protein TERM 140 218082 - 218055 - T 82 -15.6 -2.64651 | opp_overlap 218050 218051 218049, overlap 218051 AAGCGTTGAAACCGA GACCGCATGGTC ACTG GACCGTGCGGTC AATGCGTGTTTCCCA TERM 141 218471 - 218440 - T 75 -13 -3.02144 | overlap 218459 CCACGTCCGGCAAGA TCGCCACGCCGCGC GAGA ACACGGCGTAACGA TCGCACCACCGGCAG RHE_PC00204 219365 - 218490 - | putative oxidoreductase RHE_PC00205 219431 - 220372 + | LysR family transcriptional regulator TERM 142 220381 - 220396 + T 72 -6 -4.3739 | overlap 220377 GGCTTGATGTCCGTC GGCGAG CCTC CGCGCC TTTTGTCAGAGCGTG RHE_PC00206 220821 - 220402 - | hypothetical protein RHE_PC00207 221512 - 220943 - | hypothetical protein rpsUc 222006 - 221773 - | 30S ribosomal protein S21 TERM 143 221848 - 221892 + g 75 -4.2 -4.72272 | gap 1, overlap 221847 221846 221844 TGCAGCCTTTCGCTG CCGGCTGATCGCCTGCG CTTTTTCCCGCA CGC-GGCGTTCGGACGG TTTTTCATAGGCGCG TERM 144 222197 - 222214 + H 74 -12.7 -2.8237 | opp_overlap 222194, overlap 222195 222206 TCGAAAGAAATCCTC TGCCGGC CGCA GCCGGCA TCATTCGGTTGTTAT rapAc 222639 - 223358 + | autoaggregation protein TERM 145 223410 - 223387 - T 70 -10.9 -3.33792 | opp_overlap 223388, overlap 223385 223388 ATCAGTGAGATAAGA CGCCCGCCG CGCAAT CGGCGGGCT TTTTTGTAGATGCGC TERM 146 223388 - 223409 + T 100 -14.4 -5.28176 | opp_overlap 223388 223387 223385 TCAGTGAGATAAGAC GCCCGCCG CGCAAT CGGCGGGC TTTTTTGTAGATGCG TERM 147 223409 - 223388 - T 78 -14.4 -2.59793 | opp_overlap 223388, overlap 223387 223385 TCAGTGAGATAAGAC GCCCGCCG CGCAAT CGGCGGGC TTTTTTGTAGATGCG TERM 148 223987 - 223975 - T 81 -3.3 -5.1861 | GTCATGAGCAAAAAA CGACA TCC CGCCG CGCCTCACATCGCCT RHE_PC00210 224952 - 224314 - | TetR family transcriptional regulator TERM 149 225028 - 225012 - H 71 -12.3 -2.82623 | overlap 225009 TTCTGCCCACAAGCA GCGTTCG AAG CGAACGC CTCGATCTCCCCTGG TERM 150 225625 - 225652 + G 93 -9 -4.78107 | gap 1, overlap 225626 GGGCGTCTTCTACGG CGCCGGGCTCGCC TTC GGCGTGCC-GGCA TTTTTCATCCTGCTC TERM 151 225626 - 225651 + G 76 -12.5 -3.46141 | gap 1, overlap 225625 GGCGTCTTCTACGGC GCCGGGCTCGCC TTC GGCGTGCC-GGC ATTTTTCATCCTGCT RHE_PC00211 225236 - 225799 + | C4-dicarboxylate transport system, permease protein RHE_PC00212 225810 - 227090 + | C4-dicarboxylate transport system, permease protein RHE_PC00213 227161 - 228177 + | C4-dicarboxylate transport system, substrate-binding protein TERM 152 228610 - 228628 + G 74 -10.2 -3.73224 | overlap 228615 GAGAGTTTTCGGCGC GGGCTGCC GCA GGCAGACC TTTCCTCCGCCGTGC aroEc 228241 - 229101 + | shikimate 5-dehydrogenase TERM 153 229434 - 229471 + G 83 -12 -4.08767 | gap 2, overlap 229435 TGCTCGAACGTCTCG CCGGCCGCT-CTCGG-CG GTCT CGACCGGGCAGCGGCCGA TTTTCACGAACTCGG TERM 154 229435 - 229470 + G 81 -15.5 -3.05046 | gap 2, overlap 229434 GCTCGAACGTCTCGC CGGCCGCT-CTCGG-CG GTCT CGACCGGGCAGCGGCCG ATTTTCACGAACTCG RHE_PC00215 229125 - 231014 + | putative 4-hydroxyphenylpyruvate dioxygenase protein RHE_PC00216 232061 - 231024 - | LacI family transcription regulator TERM 155 231697 - 231677 - G 74 -12.5 -3.27498 | opp_overlap 231673, overlap 231678 231689 GAGATTCGACACCAA GCGGCGCGA TAA TCGCGCCGG CGACGTTCATCGATT TERM 156 231696 - 231678 - G 80 -16 -2.56177 | opp_overlap 231673, overlap 231677 231689 AGATTCGACACCAAG CGGCGCGA TAA TCGCGCCG GCGACGTTCATCGAT TERM 157 232255 - 232199 - R 73 -5.5 -4.61231 | gap 4, opp_overlap 232206, overlap 232203 232206 CGACACGCGTAAAAA CAAAGACCTAAAGCACGGGGAGCGAATCT GAA AGA-TCG--CCACGTGCTTTAG-TCTATG GAGAACTGCACCTTC TERM 158 232251 - 232203 - R 78 -4.9 -4.86385 | gap 4, opp_overlap 232206, overlap 232199 232206 ACGCGTAAAAACAAA GACCTAAAGCACGGGGAGCGAATCT GAA AGA-TCG--CCACGTGCTTTAG-TC TATGGAGAACTGCAC RHE_PC00217 233256 - 232246 - | zinc-binding dehydrogenase protein TERM 159 232274 - 232291 + g 75 -4.1 -4.77036 | gap 1, overlap 232275 AACTGCACCTTCATC GTT-GCCG GAT CGGCGGAC TTTTTGGTGATGAAG TERM 160 232740 - 232760 + g 71 -9.6 -3.75153 | opp_overlap 232730 GCAATCCGATCGGTC CGGCGCCG AAGAC CAGCGCCG TTTCCGTTCCCGCCG smoS 234058 - 233288 - | sorbitol dehydrogenase TERM 161 234126 - 234152 + H 100 -20.2 -3.53343 | opp_overlap 234105 ACCGCCTGACCGGAA GGTCCCGGCAGT CGT GCTGCCGGGACC TTTCCGGGAGGAATT TERM 162 235550 - 235539 - H 70 -3 -4.71426 | opp_overlap 235539 TGTTCACGAATAAAA TTAC ATGC GTAA ACTTTTATCCGCCAA TERM 163 236014 - 236041 + G 70 -9.8 -3.53811 | overlap 236015 TGGGCGGTGCGGCCG GCATCATCGCCG GTGT CGGCGATGACGA TTTCGGCCGGCTGAA RHE_PC00220 235824 - 236804 + | fructokinase TERM 164 237312 - 237291 - g 70 -10.1 -3.6003 | gap 1, opp_overlap 237291, overlap 237283 237280 237281 GAAAGGACGGCGAAA GCGATCGGCG CAC CGCCG-CCGC TTTATATTCTTGGCA TERM 165 237291 - 237312 + G 76 -7.9 -4.34263 | gap 1, opp_overlap 237283 237280 237281 237291 GAAAGGACGGCGAAA GCGATCGGCG CAC CGCCGC-CGC TTTATATTCTTGGCA TERM 166 237896 - 237886 - g 76 -8.2 -4.15565 | overlap 237887 GCTATTACTGGAAAA GGCC CGA GGCC GGCAAGGCGTTCGAG TERM 167 237956 - 237978 + G 79 -13.4 -3.53012 | GATCCCGGGGACGCT GCTGCGTCAG TAT CTGCCGCAGC TTTCGGCGGCCGAAG RHE_PC00221 236808 - 238076 + | putative tagatose 6-phosphate kinase protein TERM 168 238131 - 238093 - T 74 -4.6 -4.72272 | gap 2, opp_overlap 238111 TTTTCCGAGCAAAAA GAGAGACGCTTGGCTCCC GGGCG GGGAACCC-GC-CCTCTC CTCTCCGTCGCTTAC TERM 169 238111 - 238127 + T 81 -15.1 -2.8655 | opp_overlap 238093 AGACGCTTGGCTCCC GGGCGGG GAA CCCGCCC TCTCCTCTCCGTCGC RHE_PC00222 238907 - 238143 - | short chain dehydrogenase/reductase family oxidoreductase TERM 170 238685 - 238696 + g 88 -7.2 -4.82128 | overlap 238679 GGGTCTCAGCGACGA GCGC ATCG GCGC TTTTATCTTTCATCA RHE_PC00223 239677 - 238949 - | ribitol 2-dehydrogenase protein RHE_PC00224 240962 - 239703 - | sugar ABC transporter, permease protein RHE_PC00225 241909 - 240959 - | sugar ABC transporter, ATP-binding protein TERM 171 241857 - 241801 - GR 95 -10.1 -4.56597 | gap 2, opp_overlap 241803 241806 241816, overlap 241807 241809 GGCCTTTCGGAAAAA GCGAAAGACCAAGGGGAAGCGCGGCCG GTGAA CGGCCGCGCTCCTCCTTGG-CGGT-GA TTACTTGGTGATGCC TERM 172 241803 - 241857 + gr 72 -10.5 -3.41693 | opp_overlap 241801 241807 241809, overlap 241806 241816 CCTTTCGGAAAAAGC GAAAGACCAAGGGGAAGCGCGGCCG GTGAA CGGCCGCGCTCCTCCTTGGCGGTGA TTACTTGGTGATGCC TERM 173 241806 - 241854 + gr 86 -16.6 -2.86164 | opp_overlap 241801 241807 241809, overlap 241803 241816 TTCGGAAAAAGCGAA AGACCAAGGGGAAGCGCGGCCG GTGAA CGGCCGCGCTCCTCCTTGGCGG TGATTACTTGGTGAT TERM 174 241852 - 241807 - GR 100 -23.4 -3.99805 | gap 1, opp_overlap 241806 241803 241816, overlap 241801 241809 TCGGAAAAAGCGAAA GACCAAGGGGAAGCGCGGCCG GTGAA CGGCCGCGCTCCTCCTTGG-C GGTGATTACTTGGTG TERM 175 241851 - 241809 - GR 100 -27.1 -3.58159 | opp_overlap 241806 241803 241816, overlap 241807 241801 GGAAAAAGCGAAAGA CCAAGGGGAAGCGCGGCCG GTGAA CGGCCGCGCTCCTCCTTGG CGGTGATTACTTGGT TERM 176 241816 - 241844 + gr 87 -17.4 -2.72839 | opp_overlap 241809 241807 241801, overlap 241806 241803 GCGAAAGACCAAGGG GAAGCGCGGCCG GTGAA CGGCCGCGCTCC TCCTTGGCGGTGATT RHE_PC00226 242925 - 241858 - | putative sugar ABC transporter, substrate-binding protein TERM 177 242868 - 242854 - GR 75 -11.4 -3.53012 | TTTGCTTTGTGCAAA GGCGGA CGT TCCGCC GAGCAAGGATAGCAC TERM 178 242891 - 242904 + gr 84 -9.5 -4.39002 | opp_overlap 242883 GATAGCACAAGTGCC GCGGC GCCT GCCGC TTTTGTCGAAAATTT RHE_PC00227 243841 - 243143 - | AraC family transcriptional regulator TERM 179 244063 - 244080 + r 70 -5.6 -4.51812 | GTTCTACGTCCGCCT GCCAAA TTCACT TTTGGC TTTATTATTATGACG otsB 244948 - 244226 - | trehalose-phosphatase protein TERM 180 245777 - 245765 - g 100 -3.3 -6.02546 | overlap 245766 GGAAAGGAAAAAAAA CCGCA TTT TGCCG ATGCGAGTGTCTGGG TERM 181 246168 - 246180 + G 79 -9.1 -4.11216 | CCATCGGCACAGGGT TGGGC AAT GCCCA TTTTACCAATCGCGA RHE_PC00229 245129 - 246214 + | hypothetical protein RHE_PC00230 246648 - 246953 + | hypothetical protein RHE_PC00231 246808 - 247125 + | hypothetical protein TERM 182 247508 - 247489 - g 79 -9.2 -4.15106 | opp_overlap 247487 247489 247491, overlap 247491 TATCAATCCCGAAAA GACGGCGG CCGG CCGCCGTG TCTTCTCGCTCGAAG TERM 183 247491 - 247506 + G 70 -11.8 -3.18945 | opp_overlap 247489 247491, overlap 247489 247487 TCAATCCCGAAAAGA CGGCGG CCGG CCGCCG TGTCTTCTCGCTCGA TERM 184 247506 - 247491 - g 75 -11.8 -3.67 | opp_overlap 247491 247489 247487, overlap 247489 TCAATCCCGAAAAGA CGGCGG CCGG CCGCCG TGTCTTCTCGCTCGA repAc 247241 - 248458 + | plasmid partitioning protein RepAc TERM 185 249286 - 249266 - g 74 -12.5 -3.27475 | overlap 249264 TGTTGGAGGAGAAGA GCCCGCCGC AAC GCGACGAGC AGACCCTTCGTACGT repBc 248569 - 249444 + | plasmid partitioning protein RepBc TERM 186 249538 - 249498 - f 73 -8.4 -4.16251 | gap 1, overlap 249505 AGATAACGCGCAAAA GAAAAAAGCCCCCG-AACG TCAC CGTCACGGAAGCTTTCCTC GTAGTCTTGAACACC TERM 187 249531 - 249505 - f 100 -5.1 -5.79595 | gap 1, overlap 249498 GCGCAAAAGAAAAAA GCCCCCG-AACG TCAC CGTCACGGAAGC TTTCCTCGTAGTCTT TERM 188 249681 - 249663 - g 74 -11.6 -3.52941 | AAACCGGAATTATAA CGACGCCC TTC GGGCGGCG GTCGATGACGCTTGG repCc 249644 - 250948 + | plasmid replication protein RepCc SEQUENCE gi|86360278|ref|NC_007765.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence (length 505334) RHE_PE00001 176 - 1312 + | hypothetical protein TERM 1 1315 - 1348 + T 100 -19 -4.13767 | gap 1, opp_overlap 1275 1315 1320 GGGTATCATCTGAAA CGAAAGCGGCCGGGT CGTGA ACCCGGCCGCTT-CG TTTTGAGATGAGCAC TERM 2 1348 - 1315 - T 100 -19.7 -3.62096 | gap 1, opp_overlap 1315, overlap 1275 1320 GGGTATCATCTGAAA CGAAAGCGGCCGGGTC GTG AACCCGGCCGCTT-CG TTTTGAGATGAGCAC TERM 3 1344 - 1320 - T 100 -19.3 -4.07246 | opp_overlap 1315, overlap 1275 1315 TCATCTGAAACGAAA GCGGCCGGGTC GTG AACCCGGCCGC TTCGTTTTGAGATGA TERM 4 1360 - 1399 + T 71 -11.4 -3.10236 | gap 1, opp_overlap 1360, overlap 1353 TTCGTTTTGAGATGA GCACCCGATCTGCCATCTG TCA CAGAGTGCAGACCGGG-GC TCTTGCGCTTCCATT TERM 5 1399 - 1360 - T 75 -13.6 -2.62184 | gap 1, opp_overlap 1360 1353 TTCGTTTTGAGATGA GCACCCGATCTGCCATCTG TCA CAGAGTGCAGACCGGG-GC TCTTGCGCTTCCATT RHE_PE00002 2143 - 1433 - | hypothetical protein RHE_PE00003 2931 - 2164 - | hypothetical protein RHE_PE00004 3457 - 2918 - | RNA polymerase sigma factor RHE_PE00005 3984 - 3616 - | hypothetical protein TERM 6 3677 - 3648 - GR 73 -7.1 -4.34912 | gap 1, opp_overlap 3652, overlap 3645 AATGAAGGAAAAGAA GCG-GGTCTACGAG GCT CTCGTGGACGGCGC CATGGACGGGCTGAC hmrR 4337 - 3948 - | copper eflux transcriptional regulator protein actP 6869 - 4347 - | copper-transporting ATPase protein TERM 7 5814 - 5824 + g 71 -8.2 -3.87149 | GGGACGCACGCGCAG CCGG TCG CCGG TTTGAATTTCCTCGA RHE_PE00008 9611 - 7008 - | putative maltooligosyl trehalose synthase protein TERM 8 9304 - 9315 + g 70 -7.2 -4.07568 | AAGGCCAGCACGTCG CGCC ACCA GGCG TTTTCCGGCGAAGCG TERM 9 9701 - 9685 - R 71 -6.5 -4.26903 | TTCAGTCGATGAAAA CGCCG ACACTTG CGGCG CGCCCGGCCGAATCG RHE_PE00009 11752 - 9671 - | penicillin-binding protein TERM 10 11362 - 11348 - G 82 -11.4 -4.08064 | AAGTTTTGCCGAAAA CGAGCG TTC CGCTCG CGGCTCGATCAGCCG RHE_PE00010 17220 - 11749 - | hypothetical protein TERM 11 12230 - 12188 - G 90 -15.7 -3.78775 | gap 2 CGCTCGATGAGGAAA CCGTCGCCGC-CCG-CCGT TAGCGGC ACGGTCGGGGCGGCAACGG TGGTGACGACAGCCG TERM 12 12691 - 12745 + g 73 -11.5 -3.61398 | gap 1, opp_overlap 12722 12723 12726, overlap 12694 GGCGAGCGGCGTCGG GAAGTCGTTGATCATCGTATCGGCGT AATA ACGCAGAT-CGCTGATCGCCGCCTTC TTGTTGCGGGCAAGG TERM 13 12831 - 12856 + g 70 -7.5 -4.08216 | AGAGCGTATTCTGCA GGTTTTCGAGC GCCT GCACGAAGGCC TTTTCCGGCACGTCA TERM 14 15546 - 15604 + g 95 -10.8 -4.40237 | gap 2, opp_overlap 15517, overlap 15586 15588 TCTTGGCGGCGATGA CGGCCG-G-CGTCAGCGCCGCCGTGCCG CGGAT CAGCCCGGCGGTGAAGGTGGCGCGGCCG TTTTCGTCTGTCGTC TERM 15 17687 - 17646 - gR 93 -13.7 -3.87869 | gap 1 TGAAGGGCGTAGAAA GCGCCGTCTCCGGTTATGCC GGC GGCACGGCCA-AGACGGCGC AGTATGAAACCGTCA RHE_PE00012 18664 - 18074 - | hypothetical protein msrAe 17429 - 18133 + | methionine sulfoxide reductase A TERM 16 19251 - 19279 + G 93 -18.1 -3.28712 | overlap 19267 CAATCCCGAGACTGT CGCCGACGGCGTC AAG GGCGCGGTCGGCG TTGTCCAGAAGCCGG TERM 17 19346 - 19381 + G 88 -8.9 -4.68593 | opp_overlap 19329, overlap 19339 TTGCCGCACGCCGCG CCGGCATGTTCGCCG TCGTGC CGGCGCAGATGACGG TTTTTGCCTGATCAG RHE_PE00013 18952 - 19392 + | response regulator RHE_PE00014 20067 - 19393 - | TetR family transcriptional regulator RHE_PE00015 20305 - 21504 + | Bcr/CflA family drug resistance transporter TERM 18 21541 - 21512 - f 70 -9.9 -3.4647 | opp_overlap 21510, overlap 21510 21513 CCGAATAGTCAAAGA CCGGCCGCATCCG ATCC CGGATGCGGCTAC CATATGGTTGCGGCA TERM 19 21540 - 21513 - f 75 -13.4 -2.674 | opp_overlap 21510, overlap 21512 21510 CGAATAGTCAAAGAC CGGCCGCATCCG ATCC CGGATGCGGCTA CCATATGGTTGCGGC TERM 20 22099 - 22123 + G 74 -14.9 -2.55351 | overlap 22098 22101 CATCGCCAATGCCGT CGGCGCACCGC TCG GCGGCGCGCTG CTTGATCTCGACGGC TERM 21 22101 - 22121 + G 72 -13.9 -2.81547 | overlap 22099 22098 TCGCCAATGCCGTCG GCGCACCGC TCG GCGGCGCGC TGCTTGATCTCGACG TERM 22 22840 - 22865 + G 75 -11.7 -3.56958 | GCCGATGTTCTTCCT GGCCGCCTGCC TTGC GGCCGGCGCCC TTCTGGTCTTCTTCG RHE_PE00016 21641 - 22933 + | putative tartrate transporter protein RHE_PE00017 23981 - 22944 - | LacI family transcription regulator TERM 23 23859 - 23887 + g 71 -8.7 -3.84514 | opp_overlap 23855, overlap 23863 GACGTAGCCAAGCTC CTCGGCGGCGG CGAGCAC CCGCCGGCGCG TTTCCTCGTTGACAT TERM 24 24238 - 24212 - R 100 -20.2 -4.79756 | overlap 24232 GATATAACTGAAAAA GCCGAGGCTGCG GAA CGCAACCTCGGC TGAGGGTCGAGCGAC TERM 25 24309 - 24283 - R 82 -5.9 -5.00616 | gap 1, opp_overlap 24283 CGCCGCTTCAAAAAA CGT-CAGGTCTA CTCG CAGACCCGTACG GTTTCGGCGTGATAG RHE_PE00018 24602 - 24291 - | hypothetical protein TERM 26 24460 - 24505 + g 76 -12.6 -3.5121 | gap 3, overlap 24458 24460 GCGCCGCCGATCAGG CC-GCC-GACCA-CGCCTGCGGC AAC GCCGCCGGCGATGATCCGGCCGG TATTGTTATGGTGAT RHE_PE00019 26612 - 24714 - | putative multidrug ABC transporter, ATP-binding protein TERM 27 25681 - 25666 - G 74 -2.4 -4.95843 | overlap 25667 ATATAAAACAGAAAA GCGACG AGCA CGCCGA CATCGAGCGCCTGGT TERM 28 26697 - 26736 + r 71 -11.5 -3.05463 | gap 2, overlap 26704 GAGAAGGTGCCCGAC GGGCGGATGAGGG-G-GCC ACAC GGCACGCCCTCGTTTGCCC TTCGCTACCGCGCCT RHE_PE00020 28482 - 26809 - | putative multidrug ABC-transporter, ATP-binding protein TERM 29 27881 - 27897 + g 76 -10.9 -3.80114 | AGCGCCAGCGCGTTT TTCGAGG CCG CCTCGAA TTTCGTGAGTTCATG RHE_PE00021 28894 - 29511 + | hypothetical protein RHE_PE00022 29520 - 29828 + | LysR family transcriptional regulator TERM 30 30092 - 30104 + F 73 -5.5 -4.64657 | AGTCCAATAAATCCC TTGCC ACT GGCGA TTTTTGGCGCTTTCA TERM 31 31322 - 31377 + G 77 -12.5 -3.61398 | gap 3, overlap 31324 31349 31351 AGCGCGAGCTTGCCG AAGGCCGCACCGTGCTGCGTCGCGGCCG GGC CGGCCGC--CGCGGCTTGA-GCGGCCTG TTCTTCACGCCGGCC TERM 32 31324 - 31375 + G 84 -15.1 -3.38812 | gap 3, overlap 31322 31349 31351 CGCGAGCTTGCCGAA GGCCGCACCGTGCTGCGTCGCGGCCG GGC CGGCCGC--CGCGGCTTGA-GCGGCC TGTTCTTCACGCCGG TERM 33 31664 - 31689 + G 71 -11.2 -3.48593 | gap 1 TTTCACAGGCCTATG CCGCT-GCCGA GCGGA TCGGCGAGCGG TTCTATCCGCAGGTC RHE_PE00023 30310 - 31716 + | hypothetical protein TERM 34 32321 - 32349 + G 76 -6 -4.63542 | gap 1, overlap 32323 GAGCGCATCAAGGGC TATCGGCCTGATG AGAT CATC-GGCCGGCA TTTTTCGACCTTCTA TERM 35 33268 - 33258 - g 76 -8.2 -4.11216 | overlap 33259 GGCTCATCCTGAAAA GCCG CCC CGGC GAAGGAACGACCGCG RHE_PE00024 31787 - 33724 + | two-component sensor histidine kinase/response regulator hybrid protein RHE_PE00025 34902 - 33757 - | putative acyltransferase protein TERM 36 34050 - 34040 - G 73 -6.8 -4.28656 | ATCCAAGATTCAAAA GTCC GAT GGAC AAGGAACATGATCGG RHE_PE00026 35766 - 35011 - | cytochrome oxidase complex biogenesis factor protein TERM 37 35358 - 35374 + g 73 -11.5 -3.58726 | overlap 35352 CCTGGCCTTCGCGGC GCGCGGC CGG GTCGCGC TTGTCTGTGGGAACG TERM 38 35691 - 35673 - G 70 -11.7 -3.16564 | TGCCGAGCGCAGCAA GCGCTGC GGCAA GCAGCGC CAGGCAGACGACAAA TERM 39 35782 - 35801 + r 100 -16.4 -3.727 | opp_overlap 35775 35776 GGCAAGAACCGCTTC GGGCGGCG TTGC CGCCGCCC TTTCGATGTCATCAC cyoD 36214 - 35813 - | cytochrome O ubiquinol oxidase, subunit IV protein cyoC 36831 - 36211 - | cytochrome O ubiquinol oxidase, subunit III protein TERM 40 36267 - 36247 - G 74 -6.1 -4.48333 | ATAGACGAAGGAAAA GACGCCG ATCCAGA CGACGTC GAGGAAGTGCCAGAA cyoB 38840 - 36837 - | cytochrome O ubiquinol oxidase, subunit I protein cyoA 39998 - 38883 - | cytochrome O ubiquinol oxidase, subunit II protein TERM 41 39062 - 39108 + g 74 -12.2 -3.52073 | gap 1, overlap 39074 CCGGAGCCCCCGTTG CCGGCACGGTGGCGGCGGGCG CCACCA CGCCT-TCGCCGGCGTGGCGG TTGTCGTATTGCAGC TERM 42 40172 - 40158 - H 75 -11.4 -3.4582 | overlap 40156 GCAGTGCAGCAAACA TGCCGC ACT GCGGCA AAAATCATCGGGCGC RHE_PE00031 40446 - 41777 + | putative ABC transporter, permease protein TERM 43 41888 - 41915 + F 100 -21.4 -3.05384 | AAGCTCTCGCACGTC CCCTCTCCCCGT TTTT ACGGGGAGAGGG TTAGGTGAGGGGCAG RHE_PE00032 42017 - 42484 + | hypothetical protein TERM 44 42733 - 42708 - g 80 -4.7 -4.87665 | opp_overlap 42708, overlap 42728 TCGCATCGACAAAAA GGCGCAG AGGGTGGAAATA CTGCGCC TTCTTCATGGCGCCC RHE_PE00033 42481 - 42771 + | hypothetical protein RHE_PE00034 43246 - 42779 - | putative transcriptional regulator protein TERM 45 43264 - 43290 + r 70 -12.2 -2.52795 | overlap 43260 GCGTTTCAATCCCCT GACGCAGGGTTC TTG GAACCCGGCGCC TCAATTCCGGGCGTT RHE_PE00035 46058 - 43344 - | putative multidrug ABC transporter, ATP-binding and permease protein TERM 46 44344 - 44311 - G 91 -16.7 -3.54424 | opp_overlap 44316, overlap 44312 TTGTAGGCGTCGAAA TCGAAGGGCACGACG ATGC CGTCGAGCCCTTCGT CGCGCAGCCGGTCGC TERM 47 44343 - 44312 - G 90 -20.2 -2.72511 | opp_overlap 44316, overlap 44311 TGTAGGCGTCGAAAT CGAAGGGCACGACG ATGC CGTCGAGCCCTTCG TCGCGCAGCCGGTCG TERM 48 44316 - 44339 + g 76 -13.8 -3.14132 | opp_overlap 44312 44311 GGCGTCGAAATCGAA GGGCACGACG ATGC CGTCGAGCCC TTCGTCGCGCAGCCG TERM 49 45427 - 45383 - G 70 -10.5 -3.60627 | CGACGCGACCGGAAA GCTCGCGGGCCGTCAGCTGCC GCT GGCGGCCGAGATCCAGCAAGC GCTTGCGCATGCGGG RHE_PE00036 47386 - 46241 - | putative glycosyltransferase protein TERM 50 46366 - 46381 + g 70 -10.4 -3.65224 | CAGCCTCTTTCACAT GGGCTG AGGT CAGCCC TTGTTCCGGTAGGAT TERM 51 47162 - 47120 - G 83 -15.5 -3.21099 | gap 1 GGCGTCGAGCAGCAA TTGCCGG-CGGGCGGCGAGG AATT CTTCGCCGGCCGGCCGGCCA TCAGCATCGGCGAGG redB 48510 - 47383 - | glycosyltransferase protein redA 49875 - 48640 - | membrane-anchored protein RHE_PE00039 51118 - 49946 - | oligopeptide ABC transporter, permease protein RHE_PE00040 52116 - 51118 - | oligopeptide ABC transporter, permease protein TERM 52 51541 - 51559 + g 73 -8.1 -4.10161 | GGGGATCCAGAGATG GGCGAGG ATCGA CTTCGCC TTTTCCCAGCTCATC RHE_PE00041 54027 - 52120 - | oligopeptide ABC transporter, substrate-binding protein RHE_PE00042 55916 - 54027 - | oligopeptide ABC transporter, ATP-binding protein TERM 53 54155 - 54165 + g 73 -8.2 -4.07568 | CCCAGTTCTGCTTGT CGGC GGC GCCG TTTTCCCGGAGCGCC TERM 54 54791 - 54805 + g 74 -12.8 -3.29144 | opp_overlap 54788 54785 CGTTGAAGAGGACCG CGCCGG AAT CCGGCG TTATCGCGCGCATCA TERM 55 55012 - 55026 + g 82 -5.6 -4.82901 | overlap 55013 AGCGTGCCCGGCGTT TCCGCT TGC AGCGGC TTTTTCTGGCCAACA cyaA 57434 - 56073 - | adenylate cyclase protein TERM 56 56873 - 56898 + g 79 -14.1 -3.41878 | gap 1, overlap 56852 GCTTGCCGAGCACTG CCATCTTGGCGG CGA CCGCC-AGATGG TTCTGCATTCGCAGC TERM 57 58086 - 58068 - g 90 -13.8 -3.96705 | opp_overlap 58067 58066 TGCAGAAAATCGAAA CCCGCGCG GCG CGCGCAGG CATTATCGGGCTCGG RHE_PE00044 57635 - 59362 + | UDP-glucose 6-dehydrogenase/GDP-mannose 6-dehydrogenase protein RHE_PE00045 60527 - 59352 - | hypothetical protein TERM 58 59921 - 59946 + g 77 -14.1 -3.28924 | gap 1, opp_overlap 59893 GGCCTTCGCCGGGCA CGGCGATGATCG AGA CGATC-TCGCCG TTCTCAGCCGCAATC RHE_PE00046 60652 - 61131 + | hypothetical protein RHE_PE00047 61173 - 61673 + | hypothetical protein TERM 59 62246 - 62232 - T 75 -6.4 -4.63184 | AAGCTACGGCAAAAA CAGCAC ATT GTACTG ATCGAACTCATCCGG RHE_PE00048 63098 - 62220 - | hypothetical protein TERM 60 62633 - 62610 - G 72 -2.2 -4.76644 | overlap 62612 AAGATTGAGGAAAAA GTCGATCTCG CCTG CGTGCTCGCC GGCGGCGCAGTTGAC cyaCe 64810 - 63098 - | adenylate cyclase protein TERM 61 63407 - 63430 + g 83 -12.4 -4.02534 | CAGCGGCAGCACCAG CTCGTCGGCG AGTT CGTCGGCGAG TTTCTCAATTTCCGT RHE_PE00050 65062 - 66087 + | glycosyltransferase RHE_PE00051 66084 - 66836 + | hypothetical protein RHE_PE00052 67689 - 66847 - | putative hydrolase protein RHE_PE00053 68093 - 67719 - | hypothetical protein TERM 62 67893 - 67875 - G 81 -10.2 -4.18018 | GTCGTCGACGGAAAA CAGCCGCG AAC CGCAGCCG GTGCAGAAATGCCGG RHE_PE00054 69011 - 68181 - | hypothetical protein TERM 63 68518 - 68491 - G 70 -12.8 -2.86177 | gap 1, opp_overlap 68511, overlap 68500 ATATCGTAGATGAGA GCGATCGAACGGC CCT GCCATTCGA-CGC GGTAGCCGATGGCGC pcaB 70415 - 69336 - | 3-carboxy-cis,cis-muconate cycloisomerase TERM 64 70428 - 70451 + r 86 -11 -4.07568 | overlap 70429 CATCCGGCTGCCGCC ACCTTCTCCC CGAG GGGAGAAGGA TTTTGGGGCAGCGCC TERM 65 70429 - 70450 + r 80 -14.5 -3.04398 | overlap 70428 ATCCGGCTGCCGCCA CCTTCTCCC CGAG GGGAGAAGG ATTTTGGGGCAGCGC pcaG 71185 - 70574 - | protocatechuate 3,4-dioxygenase alpha chain protein pcaH 71937 - 71188 - | protocatechuate 3,4-dioxygenase beta chain protein TERM 66 71833 - 71814 - G 80 -16.4 -2.64616 | CGTCGAGCGACAGCA GCGCGCGC TGCG GCGCGCGC AACACCGAGGTTTTG pcaCe 72351 - 71947 - | gamma-carboxymuconolactone decarboxylase protein pcaD 73157 - 72348 - | beta-ketoadipate enol-lactone hydrolase protein TERM 67 72708 - 72737 + g 86 -8.5 -4.56597 | GAACCAGCGCTCCAT GATGGCGTCGACG ATGC TGGCGATGCCGTC TTTTTCCACGGCGGC TERM 68 73801 - 73786 - g 71 -4.6 -4.4078 | overlap 73788 CTTCCTCAAGGAAAA TACCCG GAGC CGGGTG AAGATCGTCACCGGC pcaQ 73421 - 74338 + | LysR family transcriptional regulator TERM 69 74719 - 74754 + G 72 -11.8 -3.34715 | gap 1, overlap 74717 74720 CCGACGAACGCGCTG GCGTCGCCTGGCTGCGG ACA CCGCA-TCAGGCGCCGG TGTTTGGCGGCCATG TERM 70 74720 - 74753 + G 77 -15.3 -2.60615 | gap 1, overlap 74719 74717 CGACGAACGCGCTGG CGTCGCCTGGCTGCGG ACA CCGCA-TCAGGCGCCG GTGTTTGGCGGCCAT RHE_PE00061 74409 - 74921 + | hypothetical protein RHE_PE00062 74918 - 75613 + | hypothetical protein RHE_PE00063 76248 - 75610 - | putative hydrolase protein TERM 71 76143 - 76120 - G 73 -11 -3.62096 | opp_overlap 76114 CCTGACGACGCGAAA GCCGACGC CGGCAAGC GCGTCGGC CGCCGCTGTCATCGA TERM 72 76659 - 76632 - R 70 -9.9 -3.46602 | gap 2, opp_overlap 76632 TGTCCGACAGGATAA GGGCGCTC--CCC GCAA GGGTCGAGCGCCC TTTTTGCTTTTCCGA TERM 73 76632 - 76659 + r 100 -9.9 -5.0925 | gap 2, opp_overlap 76632 TGTCCGACAGGATAA GGGCGCTC--CCC GCAA GGGTCGAGCGCCC TTTTTGCTTTTCCGA TERM 74 76774 - 76791 + r 71 -4.9 -4.56597 | CGAAATTGGCTGCAT CGTTGAA ATCG TTCAATG TTTTTCCACGGGCAC TERM 75 76822 - 76871 + r 100 -10.9 -5.40072 | ATGGCTGAAAAGGCG TCGAATTTCGGAATCCCGAAG CGGGCGGA TTTCGGGATTCCGAAGTGGGA TTTTTTTCGCGCCGG RHE_PE00064 77807 - 76908 - | LysR family transcriptional regulator TERM 76 77109 - 77092 - G 79 -8.3 -4.3739 | overlap 77096 CATGTCGGCAGAAAA GCGAGGC CCAT GCCGCGC AGGGCCGCCAGGTGT RHE_PE00065 78050 - 78784 + | hypothetical protein TERM 77 78864 - 78852 - f 72 -10.5 -3.43944 | overlap 78846 78853 ACCAGGAACTCAGAA GGCGG CCT CCGCC GCGTGACCTCACATC RHE_PE00066 78900 - 79298 + | hypothetical protein TERM 78 79380 - 79396 + F 76 -6.5 -4.57073 | opp_overlap 79391 AGTTTTCTGTTCCAT TCCTCCT CAA AGGCGGA TTTTTCCCGCCGGTC TERM 79 79950 - 79970 + G 79 -9.6 -4.18488 | opp_overlap 79948 CCTTCAAGAAGGAGC GCGGCTGG CATCA CCTGCCGC TTTATTCCGATCCGT RHE_PE00067 79526 - 80227 + | hypothetical protein RHE_PE00068 80877 - 80248 - | DnaJ family molecular chaperone TERM 80 80357 - 80373 + g 79 -10.8 -3.93038 | opp_overlap 80341 CCGCTCAGCATGTCG GCGGCC CGTTC GGCCGC TTTGATCTTCGCCTC TERM 81 80886 - 80918 + r 70 -9.8 -3.49568 | gap 1, overlap 80884 CCGTCACACCTACTC CCTTG-CCGCCCTTG ATGT CACGGGCGGTCTAGG TCTTCTTCTGCATCA RHE_PE00069 81594 - 81034 - | hypothetical protein TERM 82 81574 - 81544 - G 74 -14 -2.8664 | opp_overlap 81572, overlap 81525 81550 GATGGAAGCACCAGA GGGAAAGACGGCGA TCT CCACCGTCTCCCCC TTGCCGTTCTTCCAC hutUe 83306 - 81633 - | urocanate hydratase hutG 84142 - 83336 - | formiminoglutamase protein TERM 83 84367 - 84353 - R 74 -11.4 -3.31501 | ATCAACCCTCCAGAA CCGGCA AGA TGCCGG ATGAAACCGAGGCGT hutHe1 85874 - 84339 - | histidine ammonia-lyase hutI 87133 - 85871 - | imidazolonepropionase RHE_PE00074 87256 - 88602 + | N-formimino-L-glutamate deiminase TERM 84 89030 - 89006 - g 71 -12.7 -3.09581 | opp_overlap 89013, overlap 88995 89004 CAAAGGCGGAAGACA GCCTCCGGCTG GAG CTGCCGGCGGC CTCCCCGGTGCTCGA RHE_PE00075 88663 - 89385 + | GntR family transcriptional regulator hutC 90173 - 89418 - | histidine utilization transcriptional regulator (repressor) protein TERM 85 89778 - 89768 - G 76 -8.2 -4.17023 | opp_overlap 89772 TCAACGAGTGGAAAA CGGC GGC GCCG ATCTCGAGTTCGAGG RHE_PE00077 90365 - 91207 + | octopine ABC transporter, substrate-binding protein TERM 86 91233 - 91267 + F 100 -15.8 -3.82378 | gap 1, opp_overlap 91208, overlap 91233 91234 CCTTTGGCCCGCAGG CGC-CGGTCTCCGGC TTTATC GCCGGAGACCGCGTG TTATTCTCGATCAAT TERM 87 91233 - 91265 + F 95 -17.1 -3.49568 | gap 1, opp_overlap 91208, overlap 91233 91234 CCTTTGGCCCGCAGG CGCCGGTCTCCGGC TTTATC GCCGGAGACC-GCG TGTTATTCTCGATCA TERM 88 91234 - 91246 + F 77 -10.5 -3.85698 | opp_overlap 91208, overlap 91233 91233 CTTTGGCCCGCAGGC GCCGG TCT CCGGC TTTATCGCCGGAGAC occQe 91314 - 92039 + | octopine ABC transporter, permease protein occMe 92050 - 92754 + | octopine ABC transporter, permease protein occPe 92783 - 93559 + | octopine ABC transporter, ATP-binding protein TERM 89 94747 - 94725 - g 95 -11.3 -4.45544 | gap 1 GCTCAGCAACGAAAA CCGCCGGCTG GCGG CA-CCGGCGG CCCTGGACGGCGGCC hutHe2 93556 - 95049 + | histidine ammonia-lyase protein RHE_PE00082 95605 - 95063 - | hypothetical protein RHE_PE00083 95796 - 96533 + | hypothetical protein TERM 90 96580 - 96551 - T 82 -8.5 -4.59109 | gap 1, opp_overlap 96551 96552, overlap 96553 CACATCGCGTAAAAA GACT-GTGGCGCCC GGT GGGCGCCACGAGAG TTTCACCGCTTAGGT TERM 91 96552 - 96579 + T 71 -12 -2.74322 | gap 1, opp_overlap 96551 96553, overlap 96551 ACATCGCGTAAAAAG ACT-GTGGCGCCC GGT GGGCGCCACGAGA GTTTCACCGCTTAGG TERM 92 96578 - 96553 - T 100 -15.5 -3.90762 | gap 1, opp_overlap 96552 96551, overlap 96551 CATCGCGTAAAAAGA CT-GTGGCGCCC GGT GGGCGCCACGAG AGTTTCACCGCTTAG RHE_PE00084 99151 - 96590 - | putative sarcosine dehydrogenase protein RHE_PE00085 99612 - 99439 - | hypothetical protein RHE_PE00086 99950 - 99690 - | hypothetical protein RHE_PE00087 100286 - 99951 - | hypothetical protein RHE_PE00088 101236 - 100394 - | AraC family transcriptional regulator TERM 93 102920 - 102947 + G 74 -2.6 -4.83615 | gap 1, opp_overlap 102923, overlap 102921 102923 AGAGCTGCGCGCGGA AAAGGCGGCGCTG AGA CAG-GCCGTCTGA TTTTTGTGAGGGATG agaL1 101481 - 102947 + | alpha-galactosidase (melibiase) protein TERM 94 104097 - 104115 + G 70 -8 -4.09685 | CCGCGACGTGCAGGC GGTGGCGG GCT CCGCCGAC TTTTCCAACCTCGAG TERM 95 104875 - 104847 - g 73 -8.9 -4.07885 | overlap 104848 GATGCCCTTCGAAAA GGAACTCGTCGAC GTC GTCAACAAGTTCA CGACGAGCCAGAACA agpA 103075 - 105159 + | alpha-galactoside ABC transporter, substrate-binding protein TERM 96 105213 - 105189 - f 100 -15.7 -3.82811 | opp_overlap 105188 AAGTAAAGAGCCAAA GCGCGTCGCAT GTG ATGCGGCGCGC GGGAAGTGTTCCCTC TERM 97 105281 - 105239 - f 81 -12.8 -3.59979 | gap 2, overlap 105242 CCCTCCCAGCTGAAA TGAGC-T-TCCGGCCGCGCG TGGCG CGCGCGGCCGGATATGACCA ACAAGCCGGCCGCGC TERM 98 105276 - 105242 - f 82 -14.9 -2.92613 | overlap 105239 TCCCAGCTGAAATGA GCTTCCGGCCGCGCG TGGCG CGCGCGGCCGGATAT GACCAACAAGCCGGC RHE_PE00091 105338 - 106345 + | peptide ABC transporter, permease protein RHE_PE00092 106347 - 107483 + | peptide ABC transporter, permease protein RHE_PE00093 107494 - 109161 + | peptide ABC transporter, ATP-binding protein agaL2 109186 - 110556 + | alpha-galactosidase (melibiase) protein TERM 99 110585 - 110611 + T 100 -20.8 -4.16943 | opp_overlap 110585 GTGAGGCGTCGAGAA GCCCCGCGGCGG CAA CGGCCGCGGGGC TTTTGCAATCTAGAA TERM 100 110611 - 110585 - T 100 -20.8 -3.29511 | opp_overlap 110585 GTGAGGCGTCGAGAA GCCCCGCGGCGG CAA CGGCCGCGGGGC TTTTGCAATCTAGAA RHE_PE00095 111443 - 110700 - | hypothetical protein RHE_PE00096 112629 - 111466 - | putative galactonate dehydratase protein RHE_PE00097 113753 - 112656 - | sugar ABC transporter, ATP-binding protein TERM 101 113322 - 113336 + g 73 -11.4 -3.61398 | opp_overlap 113295 113312, overlap 113313 113328 AACGAGCGCACGGCC CAGCGC CAC GCGCTG TTGTTGCCCGCCCGA TERM 102 113434 - 113469 + g 80 -5.4 -4.83169 | gap 1 TTGTCGATCTCGTCC CTTGGCAGTTTGCGCAT CTG AAGCGGGAAC-GCCAGG TTTTTGTAGACCGAT RHE_PE00098 114655 - 113765 - | sugar ABC transporter, permease protein RHE_PE00099 115488 - 114652 - | sugar ABC transporter, permease protein TERM 103 115317 - 115307 - G 78 -6.8 -4.65584 | overlap 115308 ACAAATGAGATAAAA GTGG ACC CCAC TGTCCAGATGAGAGT TERM 104 115665 - 115641 - R 100 -15 -4.15222 | ATTTTTCGGAACAAA CCGGCTGCGC TCGGG GCACAGCCGG CTAGATCGTCAGGCT RHE_PE00100 117162 - 115684 - | sugar ABC transporter, substrate-binding protein TERM 105 115887 - 115873 - G 76 -7.2 -4.29106 | opp_overlap 115863 CGTGACATCAAGAAA CTTGAT GTT ATCAAG ACGTTCCTTCATCCA TERM 106 116116 - 116142 + g 80 -5.1 -4.93968 | CGGAATGAGGCCGTA GCGCATATTGT CGATC ACGGTCTGCGC TTTTTCCTTGTCGCT TERM 107 118071 - 118046 - g 70 -11.8 -3.18386 | overlap 118044 118042 ACATCCTAGAACACA TGCGCGCGCG TAATGC CGCCCGCGCA GGGTAGAACACCGGC RHE_PE00101 117328 - 118077 + | GntR family transcriptional regulator RHE_PE00102 118131 - 119297 + | hypothetical protein RHE_PE00103 119359 - 120720 + | putative mandelate racemase/muconate lactonizing enzyme protein RHE_PE00104 120738 - 121937 + | putative mandelate racemase/muconate lactonizing enzyme protein RHE_PE00105 122447 - 122148 - | hypothetical protein TERM 108 122589 - 122561 - R 79 -12.3 -3.64103 | opp_overlap 122576 122580 TAGCGAGAGGTTAAA GTCCGGCGCAAGC GGC GACAGCGCCGGAC TGGGCGCATCGATTT RHE_PE00106 123675 - 122632 - | putative methyltransferase protein TERM 109 123320 - 123310 - G 74 -5.4 -4.55697 | ATGCCCATAAATAAA GTCT ATA AGAC CAGCATCACCGGAGT TERM 110 123484 - 123502 + g 74 -5.2 -4.56597 | opp_overlap 123484, overlap 123485 CTGACCAATCAACCA TCTGACTG CAT CAGGCAGG TTTTTGCCCGCGGCG RHE_PE00107 123928 - 125931 + | hypothetical protein TERM 111 126871 - 126887 + T 71 -9.3 -3.75937 | overlap 126872 ACCGATTATTTCGGG GCGGCCG CTT CGGCCGA TTTCAATGTCTCTAT TERM 112 126872 - 126886 + T 74 -12.8 -2.84839 | overlap 126871 CCGATTATTTCGGGG CGGCCG CTT CGGCCG ATTTCAATGTCTCTA RHE_PE00109 128866 - 128513 - | hypothetical protein RHE_PE00110 129527 - 128859 - | putative isochorismatase hydrolase protein RHE_PE00111 131077 - 129527 - | sugar ABC transporter, ATP-binding protein TERM 113 130350 - 130369 + g 70 -7.8 -4.07568 | ATCGTCGCCATCTCG GTCGTGGA GACT TCCCCGAC TTTTCCAGAGCCGAC RHE_PE00112 131775 - 131074 - | putative isochorismatase protein RHE_PE00113 132806 - 131880 - | sugar ABC transporter, permease protein RHE_PE00114 133936 - 132806 - | sugar ABC transporter, permease protein TERM 114 133556 - 133544 - G 74 -10.5 -3.73725 | overlap 133537 133545 AATAAGAATGGGAAA CGCGG GGG CCGCG CCGCCAAGCGGCATG RHE_PE00115 135084 - 133957 - | putative ABC transporter, substrate-binding protein TERM 115 134557 - 134584 + g 76 -9.9 -3.83155 | CTGCAGCACCTGTGG GATCGGCTTGG CCGCGA CGAAGCCGATC TTCTTGCTCTTCGTC TERM 116 135372 - 135389 + H 75 -12.7 -2.99319 | ACTGAGATTTGACTT TGCCCGC TTGG GCGGGCA TGTGTATGCAACCTT RHE_PE00116 135499 - 136116 + | GntR family transcriptional regulator TERM 117 136152 - 136178 + T 71 -8.6 -3.91897 | opp_overlap 136142 136141, overlap 136153 ACAAGGCGACAGCCA TGGCGGCCGC AACTGCA GCGGCTGCCC TTTATCCATAACGCA TERM 118 136153 - 136177 + T 73 -12.1 -2.94924 | opp_overlap 136142 136141, overlap 136152 CAAGGCGACAGCCAT GGCGGCCGC AACTGCA GCGGCTGCC CTTTATCCATAACGC RHE_PE00117 138176 - 136365 - | putative amidase protein TERM 119 136993 - 137007 + g 91 -9.2 -4.59773 | ACGAAGTTGGTGTAC CGGCCG AAA TGGCCG TTTTTCACAATCGGA RHE_PE00118 141719 - 138180 - | putative urea amidolyase protein TERM 120 140409 - 140397 - G 71 -4.7 -4.45945 | overlap 140391 AGGCACGAAGGAAAA GTCGC GCA GCGCC GTCGTCGCCACCTTT RHE_PE00119 142372 - 141722 - | hypothetical protein RHE_PE00120 143204 - 142383 - | hypothetical protein RHE_PE00121 144025 - 143201 - | putative ABC transporter, ATP-binding protein RHE_PE00122 144840 - 144022 - | putative ABC transporter, permease protein RHE_PE00123 145966 - 144893 - | putative ABC transporter, substrate-binding protein TERM 121 146058 - 146077 + H 72 -6.3 -4.46212 | CTCCCGGGCTTTTGT CCCGCCG TGCACC CGACGGG TTTTCTCCTCCGCCG TERM 122 146598 - 146588 - g 71 -8.2 -3.96216 | opp_overlap 146587 146595 GTTTCACGGAAAGAA CCGC CTT GCGG CTATACTGCTGATCT TERM 123 147751 - 147737 - g 74 -5.6 -4.4261 | opp_overlap 147740, overlap 147738 147740 GCTCGAACACGAAAA GCAGGC GCG GCTTGC CGATGCCGACGCCTA TERM 124 147903 - 147958 + G 74 -11.9 -3.44848 | gap 2, opp_overlap 147891 147890 147945, overlap 147943 AAGGGCACGCTGCGT GCCGGAG-ATCGGGTG-ATCGGGCCCG GTCA CGTGCTCGAAGCAGCCGATATTCCGGC TCTTTCCTACGAGCC TERM 125 149001 - 148967 - g 72 -3.7 -4.62069 | gap 2, overlap 148971 CGGCGACCCCAAAAA GCAATCCGACAAGGA GCTCGCA TCCTTGCCGGA--GC CTGCCAAAAAGAAGG TERM 126 148999 - 148971 - g 76 -11.1 -3.81926 | overlap 148967 GACCCCAAAAAGCAA TCCGACAAGGA GCTCGCA TCCTTGCCGGA GCCTGCCAAAAAGAA RHE_PE00124 146565 - 149153 + | hypothetical protein TERM 127 149347 - 149320 - g 95 -11.2 -4.56597 | overlap 149277 149337 149338 GCCGGCCCGCAAAAA GGCGCCGACCGT CAAA AGGGTCGTCGCC AAGAGTGACGACCGG RHE_PE00125 149177 - 149830 + | hypothetical protein RHE_PE00126 151524 - 149920 - | hypothetical protein TERM 128 150390 - 150376 - G 74 -9.2 -3.86252 | opp_overlap 150349 GCCGATCAAATAGAA CGGCCG GCG CAGCCG GTTCATGTTGACGCA TERM 129 150658 - 150645 - G 82 -5.9 -4.85599 | overlap 150648 150649 CGGATCGCAGAAAAA GCACG TCGC CGCGC GGACCGATCGCCACG RHE_PE00127 152391 - 151765 - | hypothetical protein RHE_PE00128 152640 - 152963 + | hypothetical protein TERM 130 153826 - 153778 - g 70 -7.9 -4.07568 | overlap 153779 153795 153804 153823 153824 GTTCCCGCCGCAAAA CCCGCGCCGGTCGAACAGGCGGC AAA GCCGCCCGTTGCACCGAAACCGC CGGCCGCTCCGAAGC TERM 131 153809 - 153795 - g 71 -12.8 -3.01712 | overlap 153779 153778 153804 CGCGCCGGTCGAACA GGCGGC AAA GCCGCC CGTTGCACCGAAACC TERM 132 155035 - 155004 - g 100 -11.6 -4.57569 | gap 1, overlap 155007 CGATTTCCTGAAAAA CCACGGCATCGA-CG CCA CGATCGATGCCGAAG GCCGCGGCGCCTCCG TERM 133 155032 - 155007 - g 76 -14.1 -3.23708 | gap 1, overlap 155004 TTTCCTGAAAAACCA CGGCATCGA-CG CCA CGATCGATGCCG AAGGCCGCGGCGCCT RHE_PE00129 153175 - 155136 + | hypothetical protein TERM 134 156283 - 156323 + G 71 -14 -2.52516 | gap 1, opp_overlap 156264 156265, overlap 156275 156283 GAGGCGATCGCCGGC GGCGATGTCGTCGCCTCCG AAGT CGGCGCCGGCGACAT-GCC CTTCGTCGTCGACCG RHE_PE00130 155158 - 156774 + | hypothetical protein TERM 135 158813 - 158795 - g 74 -10.2 -3.68351 | CGGCGAGGAGGCAAA GACGCCGG TCG CCGCCGTC GAAAATACGTTGAAG TERM 136 158934 - 158922 - g 72 -7.7 -4.24342 | GTCTCCACCAAGAAA TCAGG TTA CCTGA TCCTCGTCGATATCG RHE_PE00131 156771 - 159317 + | serine protease TERM 137 159866 - 159852 - g 77 -12.8 -3.55444 | opp_overlap 159853, overlap 159853 CGGCGATCCTGGAAA CGCCGC CAG GCGGCG GCTTCATCAGCCTCG TERM 138 159853 - 159868 + G 70 -11.8 -3.15544 | opp_overlap 159852 159853 GGCGATCCTGGAAAC GCCGCC AGGC GGCGGC TTCATCAGCCTCGGG RHE_PE00132 159332 - 160513 + | putative serine proteinase inhibitor protein TERM 139 161360 - 161336 - g 74 -9.2 -3.96216 | overlap 161337 GCCTGATCGAAAGAA TGCTGAGCCG CGACC CGGCCCAGCG CCCGCGCATGGGCGC TERM 140 161359 - 161337 - g 71 -12.7 -2.97408 | overlap 161336 CCTGATCGAAAGAAT GCTGAGCCG CGACC CGGCCCAGC GCCCGCGCATGGGCG TERM 141 161780 - 161754 - g 86 -6.4 -4.98436 | overlap 161756 161775 161776 CGAAGACTATAAAAA GGCGCTTCCCGG CTA CCAGAAGGCGGC CATCAGCCTCGGCAA TERM 142 161875 - 161839 - g 71 -9.4 -3.69354 | gap 1, opp_overlap 161855 161858, overlap 161832 161842 GCCGAGAAGGCCAAA TCAGC-CGCTGCCGCCG CTGG CGGCGACAAGGCGCCGA GTTTTGCCGAGGCCG RHE_PE00133 160555 - 162960 + | putative serine(threonine) kinase protein TERM 143 163819 - 163835 + F 82 -2.2 -5.34655 | overlap 163821 163824 GCCCGACGACATCTG TCGGCT GGCCG AGCCCA TTTTCTTTTTGATTC RHE_PE00134 163964 - 164272 + | hypothetical protein RHE_PE00135 164783 - 164598 - | putative 4-oxalocrotonate tautomerase protein RHE_PE00136 165002 - 165793 + | LysR family transcriptional regulator RHE_PE00137 165822 - 166397 + | hypothetical protein RHE_PE00138 166543 - 166890 + | ArsR family transcriptional regulator RHE_PE00139 166883 - 167386 + | hypothetical protein RHE_PE00140 167489 - 167854 + | hypothetical protein TERM 144 168458 - 168448 - g 73 -3.2 -4.72272 | TGGCGTGACGAAAAA TGCA AAG CGCA TGGTCTGCCGAAAGG RHE_PE00141 167872 - 168726 + | putative trifolitoxin immunity protein RHE_PE00142 169897 - 169034 - | hypothetical protein TERM 145 170308 - 170323 + G 71 -4.7 -4.40963 | TGCGTGGGAGGCTGC GGATC AATGTC GATCC TTATTTTTCGCGGCT RHE_PE00143 170016 - 170915 + | LysR family transcriptional regulator RHE_PE00144 171802 - 171032 - | SDR family oxidoreductase TERM 146 172548 - 172534 - H 81 -12.8 -3.60098 | opp_overlap 172534 AGGCTCGACGGCAAA CGGGCG CAT CGCCCG TTTCTCGCACTGAGA TERM 147 172534 - 172548 + H 89 -12.8 -3.87815 | opp_overlap 172534 AGGCTCGACGGCAAA CGGGCG CAT CGCCCG TTTCTCGCACTGAGA TERM 148 172609 - 172635 + H 79 -12.2 -3.61398 | overlap 172612 ATCGTTGCGTTGGCT CTGGCAGGCGGC GGG GCCGCCTGGTGG TTCTTCCAGCCGGAG TERM 149 172612 - 172632 + H 75 -12.5 -2.93073 | overlap 172609 GTTGCGTTGGCTCTG GCAGGCGGC GGG GCCGCCTGG TGGTTCTTCCAGCCG TERM 150 174210 - 174176 - H 71 -8.6 -3.97636 | ATGGGAAGGCATAAA TCCTCCTCCGACTG CAGAGAT CAGTCGGAAATGGA GGCTTTTGCTATGGG RHE_PE00146 174447 - 174689 + | hypothetical protein TERM 151 174753 - 174766 + T 71 -6.7 -4.25104 | opp_overlap 174726 CATTGGATGGCTAAC TCTGC CGGA GCAGA TTTTCGTCAGGCGAA RHE_PE00147 175734 - 174952 - | hypothetical protein TERM 152 175431 - 175447 + g 78 -6.5 -4.66833 | overlap 175414 CGGCGAGGAAGGCAG GCTGCTT GAA GAGCGGC TTTTTCGGCTTGCCG RHE_PE00148 176732 - 175830 - | putative pilus assembly protein RHE_PE00149 177697 - 176732 - | hypothetical protein TERM 153 176905 - 176885 - GR 72 -12.5 -2.50492 | overlap 176884 176882 CAGGATCATGAACAG CGCGCCGCC ATT GACGACGCG GAAGTTCATCCGCGC TERM 154 177062 - 177116 + gr 77 -11.3 -3.65812 | gap 1, opp_overlap 177057 177058 177061, overlap 177107 CATCTTGAAATGCAG GCTCGGCA-CGGTGCGGCCGTGGC GGTCGAGG GCCTCGACCAGGCCGATGCCGAGC TTCTGTTCGCGGGCA RHE_PE00150 179129 - 177606 - | putative type II secretion system protein RHE_PE00151 180453 - 179524 - | hypothetical protein TERM 155 180578 - 180601 + Gr 74 -10.2 -3.68351 | gap 1, opp_overlap 180570 180569 CGTAAAGGGCGGTGA CCCCGCCGCGC TCA GC-CGGCGGCG TTTCGATGGTGAAGC TERM 156 180983 - 180942 - gR 71 -12.1 -2.87132 | CTGCCGTCTCATATA GTCGAGCGCAGCCTCGCCG TCGC CGTCGAAGAAGCGCACGAC AACGGCAAGATCGTC RHE_PE00153 182046 - 181366 - | hypothetical protein RHE_PE00152 180477 - 181487 + | hypothetical protein RHE_PE00154 183661 - 182018 - | hypothetical protein RHE_PE00155 184455 - 183658 - | hypothetical protein RHE_PE00156 185018 - 184461 - | hypothetical protein TERM 157 184753 - 184739 - G 74 -12.8 -3.32343 | GCCAGAGGCCGAGAA CGGCGC CGA GCGCCG CCATCAGCTTGACGT RHE_PE00157 185721 - 187037 + | putative type II secretion system protein RHE_PE00158 187871 - 187059 - | methyltransferase protein RHE_PE00159 188188 - 189024 + | AraC family transcriptional regulator TERM 158 189148 - 189105 - T 95 -13.7 -4.1413 | gap 1, overlap 189096 189094 AAGACACTTCGAAAA CGGCTCAGGCCGTCTCCGCC GCAAT GGCGC-GCCGGCCCGTGCCG CGGGCCATCGCCATA RHE_PE00160 191772 - 189109 - | AMP-dependent synthetase and ligase protein TERM 159 189650 - 189628 - G 73 -3.2 -4.72986 | overlap 189610 189629 GAGCGGCAGGAAAAA CCGTGCCGTC ACC GCCAGCCCGA GCAGCGCGAGCGAGA TERM 160 190307 - 190319 + g 76 -10.5 -3.91716 | TCGAGCACGCTGACC GCCGC CGC GCGGC TTGTTTCGCGCGTCG RHE_PE00161 191926 - 192405 + | hypothetical protein TERM 161 192443 - 192466 + T 81 -13.2 -3.60098 | CGCGGAGCGGTCTGG GACTTCGGCT ATTT GGCCGAAGTC TTTGCAGTCACGAGT RHE_PE00162 193034 - 192621 - | hypothetical protein TERM 162 193193 - 193176 - R 89 -6.9 -5.30616 | overlap 193170 TGATCGAAAGAAAAA GGCGCCA ATAC CGACGCC CCTTTCAAGAGATCT RHE_PE00163 193622 - 193227 - | hypothetical protein RHE_PE00164 194126 - 193689 - | hypothetical protein RHE_PE00165 194441 - 194172 - | hypothetical protein RHE_PE00166 194730 - 194458 - | hypothetical protein RHE_PE00167 195951 - 195106 - | arylamine N-acetyltransferase protein RHE_PE00168 196470 - 196009 - | hypothetical protein TERM 163 196791 - 196832 + G 81 -12.1 -3.93262 | gap 1, opp_overlap 196800 TGCATCATCGCGGTT GCCGACGAAGCCGGCCGTCC CTC GGCCGGGCG-CGGCGTCGGC TTTCATCTGTTGGAG TERM 164 196933 - 196922 - g 72 -7.2 -4.1552 | CATTCGGGCAACAAA GCGG ATTG CCGC CACCTTCGTCAGTCC RHE_PE00169 196590 - 197213 + | hypothetical protein RHE_PE00170 197210 - 198562 + | hypothetical protein RHE_PE00171 199283 - 198756 - | hypothetical protein RHE_PE00172 200165 - 199425 - | hypothetical protein TERM 165 199807 - 199786 - G 71 -9.4 -3.74347 | opp_overlap 199803, overlap 199779 199787 TCTAGAAAGCCGAAA CCGGCGCA CATCAT TGCGCCGA AGGTGTCGGCTTCGT RHE_PE00173 200927 - 200301 - | putative pyridoxine 5`-phosphate oxidase protein RHE_PE00174 201997 - 201026 - | putative alpha/beta hydrolase protein TERM 166 203438 - 203423 - g 100 -5.4 -5.52384 | gap 1, overlap 203424 203425 TCGCCACGAAAAAAA GTCGTCC GGT GGACG-C GCGCATCAGACGGGC RHE_PE00175 202207 - 204315 + | two-component sensor histidine kinase protein TERM 167 204375 - 204363 - g 71 -9.1 -3.80573 | opp_overlap 204363, overlap 204327 TCGATGACGACGAAA GCGTC CGC GACGC TTTGAAGGGATTGTT RHE_PE00176 204305 - 204928 + | two-component response regulator protein TERM 168 204960 - 204982 + T 76 -3.5 -4.91712 | gap 2, overlap 204963 ATCCCCTTCGACCGG GAGGCGCGCAT GAG AT-CGCGC-TC TTTTTATAGGTTCCA RHE_PE00177 206790 - 205018 - | adenylate cyclase protein RHE_PE00178 207633 - 206905 - | ribitol 2-dehydrogenase protein RHE_PE00179 208384 - 207656 - | short chain dehydrogenase TERM 169 208348 - 208362 + g 88 -8.6 -4.80882 | TGCCCTTGCCAGCAC CGGTAA TGA TTACCG TTTTTCCTGTAAAGT RHE_PE00180 209480 - 208410 - | sugar ABC transporter, ATP-binding protein TERM 170 209055 - 209019 - G 95 -10.8 -4.40561 | gap 1, overlap 209016 209020 CTCGTCGAAAAAGAA CGCCTTCGGGCG-GCGA ACCA TCGCGCGCCCCATGGCA ACACGCTGCCGTTGG TERM 171 209054 - 209020 - G 70 -12.1 -3.23855 | gap 1, overlap 209019 209016 TCGTCGAAAAAGAAC GCCTTCGGGCG-GCGA ACCA TCGCGCGCCCCATGGC AACACGCTGCCGTTG RHE_PE00181 210795 - 209755 - | zinc-dependent alcohol dehydrogenase protein RHE_PE00182 211841 - 211008 - | putative sugar ABC transporter, permease protein RHE_PE00183 212716 - 211838 - | putative sugar ABC transporter, permease protein TERM 172 212826 - 212795 - R 77 -10.8 -3.76402 | opp_overlap 212818, overlap 212796 ACCGCAGTCAGGAAA GGGGCGGTCACCTT GCTG AAGGCGACCGCCAG CCGCTTGGGAGGCGG TERM 173 212825 - 212796 - R 79 -14.3 -2.8552 | opp_overlap 212818, overlap 212795 CCGCAGTCAGGAAAG GGGCGGTCACCTT GCTG AAGGCGACCGCCA GCCGCTTGGGAGGCG TERM 174 212818 - 212843 + r 88 -10.3 -4.42238 | opp_overlap 212796 212795 CACCTTGCTGAAGGC GACCGCCAGCC GCTT GGGAGGCGGTC TTTTACTTGCGGTAG RHE_PE00184 214276 - 212846 - | putative sugar ABC transporter, ATP-binding protein TERM 175 213570 - 213556 - G 73 -11.4 -3.57144 | TGCCCCAGTTGTAAA CGCCGA AGG TCGGCG CGACCGACTCGAAGA RHE_PE00185 214520 - 215446 + | AraC family transcriptional regulator TERM 176 216418 - 216435 + F 72 -10.5 -3.53012 | GCGGCGAGCCCTTGC CGGTCGC AACG GCGGCCG TTTCACCACGGCGGC RHE_PE00188 216691 - 217533 + | hypothetical protein RHE_PE00189 221803 - 219167 - | hypothetical protein TERM 177 219334 - 219324 - G 71 -5.4 -4.46212 | opp_overlap 219324 219333 CGGTCGACGAGAAAA CCAA AAT TTGG CTTTCGGCCCTTTTC TERM 178 219706 - 219723 + g 79 -8.5 -4.29396 | TGGAGAGCGGTTTCG TCCTTTC TAAC GAAAGGA TTTTCATAGCTCCTT RHE_PE00190 222857 - 222102 - | oligopeptide ABC transporter, ATP-binding protein RHE_PE00191 223894 - 222905 - | oligopeptide ABC transporter, ATP-binding protein RHE_PE00192 224753 - 223896 - | oligopeptide ABC transporter, permease protein RHE_PE00193 225619 - 224756 - | oligopeptide ABC transporter, permease protein TERM 179 225834 - 225799 - R 73 -12 -2.90496 | gap 1, overlap 225796 CCCTTCTTGAAAGGA TCGACGAGCATG-GC AGCTGGG GCTCATGCCCGTCGA TGAGGGGGCCGGCGC RHE_PE00194 227782 - 225878 - | oligopeptide ABC transporter, ATP-binding protein TERM 180 227897 - 227926 + r 81 -9.2 -4.3739 | opp_overlap 227891, overlap 227898 TCGGAGAACCATCCT CCGGCTGCCTGC CTCCTC GCAGGGAGCCGA TTTTCTAGCCGGGTC TERM 181 227898 - 227925 + r 78 -12.7 -3.22113 | opp_overlap 227891, overlap 227897 CGGAGAACCATCCTC CGGCTGCCTGC CTCCTC GCAGGGAGCCG ATTTTCTAGCCGGGT RHE_PE00195 229468 - 227960 - | alpha-L-arabinofuranosidase protein RHE_PE00196 230603 - 229680 - | ArsR family transcriptional regulator TERM 182 231162 - 231146 - g 76 -5.7 -4.60143 | opp_overlap 231154 ATAGACGAGATAAAA GCAACGC CGG GCGACGC TCCCATATTCATTTG TERM 183 231788 - 231813 + G 71 -9.7 -3.76224 | gap 1 CCGCATATCGCGGTC GCGAG-AGACGG AAG CCGTCTGCACGC TTTCATCAGTAGCCA RHE_PE00197 230918 - 232000 + | exopolysaccharide polymerization protein TERM 184 232307 - 232320 + G 100 -3.7 -5.54079 | TCTCGACACGATATT CCTGC TTTC GCTGG TTTTTTCGTTTTTGG RHE_PE00198 232020 - 233534 + | putative succinoglycan biosynthesis transport protein TERM 185 234341 - 234371 + G 73 -6.6 -4.33274 | opp_overlap 234344, overlap 234342 GCATCTGCATGGAGG AGAGGCTGGGCGGC GAT GGCGCCATGCCTCC TTTTGCTGATCTGCA RHE_PE00199 233531 - 234712 + | putative acetyltransferase protein TERM 186 234924 - 234951 + T 75 -9.9 -3.75332 | gap 2, overlap 234928 TGCTACCGTCAGCGG CGCAGCAGCGGCC GCAA GGCCGC--CTGCG TTTCCGTTAGCAGCT RHE_PE00200 235675 - 234917 - | IclR family transcriptional regulator TERM 187 235024 - 235052 + g 70 -7.4 -4.07568 | overlap 235010 235025 CCGGCGCGCCGATAT TGATTGCCGCGA CCGTT TCGCCGCGATCG TTTTCAACAGGCACG pcaI 235823 - 236530 + | 3-oxoadipate CoA-transferase subunit A protein pcaJ 236527 - 237216 + | 3-oxoadipate CoA-transferase subunit B protein TERM 188 237352 - 237380 + G 73 -11 -3.67611 | gap 1 GATGGAGCGCAACGG CGCCGTCGACTGG GACG CC-GTCGACGACG TTATCTTCGGCTGCG pcaF 237227 - 238432 + | beta-ketoadipyl CoA thiolase RHE_PE00204 239543 - 238605 - | hypothetical protein TERM 189 238707 - 238690 - G 81 -4 -5.02074 | GTATCTTCGAAAAAA CGCCGG TTCAAC CCGTCG AAGTCTGCATCCGGA RHE_PE00205 239871 - 240353 + | putative acetyltransferase protein RHE_PE00206 240490 - 241704 + | hypothetical protein RHE_PE00207 241897 - 242691 + | dehydrogenase/reductase protein TERM 190 244450 - 244468 + G 71 -8.9 -3.85698 | overlap 244446 244442 CGGGTTGGGATGGGC TCGAGGA TCCCT TCCTCGA TTTCTGCAGGCAGGC glgXe 242790 - 244946 + | glycosyl hydrolase (glycogen debranching) protein RHE_PE00209 244962 - 245990 + | DNA topoisomerase I protein gste 246698 - 245973 - | glutathione S-transferase protein RHE_PE00211 247099 - 246701 - | hypothetical protein RHE_PE00212 247418 - 247104 - | hypothetical protein TERM 191 247577 - 247560 - R 83 -14.1 -3.25881 | overlap 247553 247555 AGATTAAAGAGCGAA GGCGCCG AATT CGGCGCC CGTCAGCGTAACGCC RHE_PE00213 247849 - 247580 - | hypothetical protein RHE_PE00214 248528 - 247980 - | hypothetical protein RHE_PE00215 249271 - 248540 - | putative nickel ABC transporter, permease protein RHE_PE00216 249765 - 249271 - | hypothetical protein RHE_PE00217 250000 - 249713 - | hypothetical protein RHE_PE00218 251443 - 250064 - | Co/Zn/Cd cation efflux system protein RHE_PE00219 252484 - 251705 - | hypothetical protein RHE_PE00220 253502 - 252549 - | hypothetical protein RHE_PE00221 254919 - 253420 - | hypothetical protein TERM 192 253822 - 253804 - GH 72 -3.9 -4.55798 | gap 1 CACGCGAAACGAAAA GATCGGCA AGCG TGC-GATC GAGGTGGAGCCAAGC TERM 193 254117 - 254137 + gH 74 -11.1 -3.28712 | opp_overlap 254110 254109 254107 ACCAATATCCCGGAG GCTCCTGGG CCG CCCAGGAAC TTGTGAGGAGACACG TERM 194 255203 - 255215 + G 71 -5.5 -4.3467 | overlap 255188 255204 GCGCCTCCATCGATT TCGAG GTG CTCGG TTTTGATCTCACGGT RHE_PE00222 255016 - 255498 + | AsnC family transcriptional regulator RHE_PE00223 256278 - 255703 - | hypothetical protein RHE_PE00224 256757 - 256275 - | hypothetical protein TERM 195 256950 - 256935 - g 82 -3.2 -5.16841 | GCATATGAATAAAAA CCCGAT CGAC ATCCGG CAGCTCGAAGCCTTT RHE_PE00225 256915 - 257913 + | LysR family transcriptional regulator RHE_PE00226 257910 - 259385 + | putative oxidoreductase protein RHE_PE00227 259394 - 260134 + | amino acid ABC transporter ATP-binding protein TERM 196 260887 - 260854 - g 74 -5.3 -4.63218 | gap 1, overlap 260881 CCGCTCGGAAGAAAA CAAGGCGCTCGCCGAC GGC ATCGACAAG-GCTTTG AAGGAGCTCAAGGCC RHE_PE00228 260150 - 260968 + | amino acid ABC transporter substrate-binding protein RHE_PE00229 261093 - 261728 + | amino acid ABC transporter permease RHE_PE00230 261748 - 262440 + | amino acid ABC transporter permease RHE_PE00231 263860 - 262499 - | putative ABC transporter, permease protein TERM 197 264412 - 264427 + r 70 -10.4 -3.36452 | AGTCCGCTTGGGCGC CGGCGT GACG ACGCCG TTCGTCTTGGCGCCT TERM 198 264574 - 264612 + r 77 -3.3 -5.15634 | GATGGAATCCCGCCC CGTCGGATA-GCCCTCT TCTTCCC AGAGGGCGTATGC-ACG TTTTTTGATCCACTC RHE_PE00232 265429 - 264788 - | DNA-directed DNA polymerase protein cls 265678 - 267054 + | cardiolipin synthethase transmembrane protein TERM 199 267032 - 267049 + F 74 -6.9 -4.47686 | TCGAGAAGATGCTGT GGTTGGG TTCG CCCTACC TTTGATTTTTTGTGC TERM 200 267596 - 267621 + G 70 -10.4 -3.62096 | AGCTGGAAGAGGGCG GTGTGCTGCG CGTCAT CGCCGCACAC TTTGGCCTGCTGCGC RHE_PE00234 267145 - 267960 + | putative endonuclease/exonuclease/phosphatase protein RHE_PE00235 268574 - 268152 - | hypothetical protein RHE_PE00236 268644 - 269066 + | hypothetical protein RHE_PE00237 269161 - 269529 + | hypothetical protein RHE_PE00238 270021 - 269563 - | hypothetical protein TERM 201 270035 - 270077 + r 83 -9.9 -4.22214 | overlap 270037 ATGGTCTCCACTCCT TGATG-TGCTGCCGCCCGGCT TTG AACCGGGCGGCAGTGGCA-CG TTATTTTACCTCGGT TERM 202 270037 - 270076 + r 71 -11.4 -3.12605 | gap 1, overlap 270035 GGTCTCCACTCCTTG ATG-TGCTGCCGCCCGGCT TTG AACCGGGCGGCAGTGGCAC GTTATTTTACCTCGG RHE_PE00239 270365 - 270078 - | hypothetical protein RHE_PE00240 271351 - 270368 - | hypothetical protein TERM 203 271420 - 271436 + H 75 -2.1 -5.1675 | overlap 271422 271431 ATCGTCGCCCGCCGC GTGCCGA CAT TCCGCCC TTTTTTGGTCGGTCA RHE_PE00241 271527 - 271760 + | hypothetical protein RHE_PE00242 272633 - 272058 - | hypothetical protein TERM 204 273409 - 273436 + G 71 -8.3 -3.84451 | overlap 273410 273412 CTGGGAGCATCCCTT CGACCGGCAGG ATTTTG CCCGCCGGTCC TTTCCCTTTCACCGC RHE_PE00243 272834 - 273556 + | GntR family transcriptional regulator TERM 205 274442 - 274462 + G 71 -8.9 -3.84039 | overlap 274440 ACCGTCTGCCCGCGG GGCTCAACG GCA CGTCGGGCC TGTTTTCCTTCATCT mdeAe 273553 - 274725 + | hypothetical protein RHE_PE00245 274758 - 276017 + | sugar ABC transporter, sugar-binding protein TERM 206 276061 - 276014 - f 95 -14.9 -3.72027 | overlap 276017 ATTCTTGAGCAAGAA GTAGCTGGATAAGGGGGCTTC GAGACA GAAGCCCCCTCATCCGCCTGC CGGCACCTTCTCCCC TERM 207 276057 - 276017 - f 95 -18.5 -2.96249 | gap 1, overlap 276014 CTTGAGCAAGAAGTA GCTGGATAAGGGGGCTTC GAGACA GAAGCCCCCTCATCC-GC CTGCCGGCACCTTCT RHE_PE00246 276204 - 277139 + | sugar ABC transporter, permease protein RHE_PE00247 277144 - 277974 + | sugar ABC transporter, permease protein RHE_PE00248 277980 - 279038 + | sugar ABC transporter, ATP-binding protein TERM 208 279988 - 279977 - g 93 -7.2 -5.06414 | overlap 279954 CCTTCCGAAGAAAAA GGCG CCGC CGCC TCCGAAACCGAGCGA RHE_PE00249 279267 - 280166 + | hypothetical protein TERM 209 280888 - 280877 - g 74 -2.2 -4.90217 | GAAACAGATGAAAAA GCCT GTTA AAGC GAAACCCAAGGGCAG RHE_PE00250 280179 - 280997 + | hypothetical protein TERM 210 281479 - 281509 + G 74 -10.5 -3.73402 | gap 1 TCGACGGTCACGACC TGAC-GCGCACGGA ACTG TCGGTGCGCCGTCA TTTACTGGAAGATCT RHE_PE00251 281001 - 282065 + | putative DNA ligase (ATP) protein ligD 284749 - 282101 - | ATP-dependent DNA ligase TERM 211 284685 - 284648 - G 76 -9.8 -3.96148 | gap 1, opp_overlap 284644 284673 284682 CTTCTGGATGACAAA GCGACG-GCGGTTGCTC TGTTT GAGGGACCGCTCGCCGC TGGGCTCAGCGGTCT RHE_PE00253 285237 - 284923 - | hypothetical protein TERM 212 286309 - 286262 - g 80 -14.8 -3.15841 | gap 1, overlap 286251 286260 AGAACGCCATCAAGA TCGCCGGCGCCATCATCGACCGG CTG CCGAGGGACG-TGGCGCCGGAGA CGACGGAAGGCAAGC TERM 213 286742 - 286726 - g 72 -2.1 -4.7173 | overlap 286727 CAGGATATGGAAAAA GCGGTCG CAA CGATCGT GGAGGTTGCGAAGAT pepT 285544 - 286776 + | peptidase T RHE_PE00255 287625 - 286807 - | putative cell wall-associated hydrolase protein TERM 214 287522 - 287539 + g 90 -14.1 -3.98159 | overlap 287533 GCTTGTTTTGTCTTT GCCGGCG TCGT CGCCGGC TTTGGTGTTGTGGTG TERM 215 287598 - 287586 - G 78 -4.8 -4.71426 | opp_overlap 287586, overlap 287581 GTCCTACGAATAAAA TCCC GACCA GGGA TTTTCCAAAGGAAAT RHE_PE00256 288911 - 287871 - | sulfate uptake ABC transporter, ATP-binding protein RHE_PE00257 289794 - 288922 - | sulfate uptake ABC transporter, permease protein TERM 216 289736 - 289761 + g 81 -14.1 -3.57561 | opp_overlap 289757 GTGTAGCGCGCCATT CTGTGTTCGGT GGTC ACCGAACGCAG TTTCGCGGGTTGAAC RHE_PE00258 290641 - 289784 - | sulfate uptake ABC transporter, permease protein TERM 217 290604 - 290566 - G 100 -24 -3.18274 | GCCAGGTCAATGTAA GACCGAGCGCCATTCCGA AAC CCGGAATGACGCTCGGCC GCTTGAACCGCCACC RHE_PE00259 291675 - 290650 - | sulfate uptake ABC transporter, substrate-binding protein TERM 218 291351 - 291365 + g 76 -5.6 -4.64676 | overlap 291348 TGGTCTTCCAGTCGG CCGGGA TCT TGCCGG TTTTCTTGGCGATGG ropAe 292037 - 293053 + | porin outer membrane protein ptsNe 293559 - 293050 - | protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of thephosphotransferase system) TERM 219 293077 - 293098 + g 100 -18.7 -4.17556 | opp_overlap 293074 CATTGCAGACGAGCG GGCGCGGCC TTCG GGCCGCGCC TTTGTTACACCTGTC kdpE 294305 - 293613 - | two-component response regulator TERM 220 294265 - 294283 + g 70 -7.4 -4.09685 | overlap 294263 TTGCGGATCGGCGGC TCGTCGTC GAC GACGAGGA TTTTGACGGCTGAAC kdpD 297010 - 294302 - | two-component sensor histidine kinase TERM 221 295576 - 295559 - G 78 -9.9 -3.99374 | overlap 295563 GCCGAGGAAGAAGAA GAAAGCG AGCA CGCTTTC CGGATCGCTGATCGT kdpC 297799 - 297230 - | potassium-transporting ATPase C chain protein kdpB 299872 - 297812 - | potassium-transporting ATPase subunit B TERM 222 299784 - 299798 + g 78 -7 -4.56597 | GGATTTCTGGCCAGC GCGCGC GGG GCGAGC TTTTTCAAGGCGGCG kdpA 301641 - 299938 - | potassium-transporting ATPase subunit A RHE_PE00267 302443 - 302081 - | hypothetical protein TERM 223 303609 - 303592 - g 71 -9.1 -3.68341 | opp_overlap 303606, overlap 303605 AATCTGATCGAAGAA GTCGGCC AATT GACCGAC GGCTGGGGCGCCGAT RHE_PE00268 302908 - 303951 + | xylitol dehydrogenase protein RHE_PE00269 304533 - 303967 - | hypothetical protein TERM 224 304037 - 304002 - G 74 -13.2 -3.35046 | overlap 304000 304005 304007 TCATTCTGCGAAAGA CCAGAGCCGCGCCCGC GACG GCAGCCGCGGCTCCAA CTGCGATCAGCAGAT TERM 225 304034 - 304005 - G 87 -17.1 -2.84325 | overlap 304002 304000 304007 TTCTGCGAAAGACCA GAGCCGCGCCCGC GACG GCAGCCGCGGCTC CAACTGCGATCAGCA TERM 226 304032 - 304007 - G 75 -13.9 -2.97021 | overlap 304005 304002 304000 CTGCGAAAGACCAGA GCCGCGCCCGC GACG GCAGCCGCGGC TCCAACTGCGATCAG TERM 227 304152 - 304142 - G 71 -8.2 -3.83026 | TGTCCCCATACCAAA GCGG CCA CCGC ATTCAGGAGGACGAA RHE_PE00270 305918 - 304557 - | mercuric reductase TERM 228 305177 - 305202 + g 79 -13.9 -3.53012 | overlap 305190 305192 CGATCTTTGCCGCGC CGGCGGTGACG CTCA CGCCGCCGCCG TTTCCCGCGAAGGCG TERM 229 305753 - 305767 + g 89 -11.4 -4.26076 | CATGGGCGGCGCGGG CGCTGG CGA CCAGCG TTTTCGTCGGCATGC RHE_PE00271 306376 - 305915 - | hypothetical protein gcdH 307653 - 306466 - | glutaryl-CoA dehydrogenase protein TERM 230 306875 - 306857 - G 74 -10.2 -3.78934 | overlap 306858 GCCCTGGCATAACAA TCCTCGGC GGC GCCGAGGG CGCCCCAGGCGATGC TERM 231 306874 - 306858 - G 74 -13.7 -2.87146 | overlap 306857 CCCTGGCATAACAAT CCTCGGC GGC GCCGAGG GCGCCCCAGGCGATG RHE_PE00273 309120 - 308167 - | LysR family transcriptional regulator TERM 232 309062 - 309030 - G 71 -13.4 -2.52676 | gap 1 CATGGCTGGAACGCA GCTGCCGGGCAGCCG TCGA CAGCTGCCCGGT-GC GGGCGACGGCGAGGA RHE_PE00274 309262 - 309576 + | hypothetical protein TERM 233 310301 - 310267 - g 79 -8.7 -4.26559 | gap 2, overlap 310264 CAAGGAAAAGAAGAA GATCGACATCGTCACCG GTG CGGCGACGACG--GATC TGACCGGCAAGGCCT RHE_PE00275 309908 - 311113 + | branched chain amino-acid ABC transporter substrate-binding protein RHE_PE00276 311119 - 311901 + | branched chain amino acid ABC transporter ATP-binding protein RHE_PE00277 311901 - 312602 + | branched chain amino acid ABC transporter ATP-binding protein RHE_PE00278 312607 - 313494 + | branched chain amino acid ABC transporter permease TERM 234 313557 - 313533 - g 71 -9.3 -3.69216 | gap 1, opp_overlap 313533 313539, overlap 313531 313534 TCCGCACGGAAAAGA GCC-GGACCG CCCTCT CGGTCCAGGC CGGCTTCCTGCTCGC TERM 235 313795 - 313807 + G 74 -4.7 -4.60487 | overlap 313793 CATCCTGATCGGCGT GGCTG GGG CCGCC TTTTTAGGCCTGGTC TERM 236 313992 - 314021 + G 73 -7.1 -4.36411 | TCGATCTGAACGACT CGACCAACATGTA TTAT TTCGTGTTGGCCG TTTTCCTCGTTGGTA RHE_PE00279 313496 - 314485 + | branched chain amino acid ABC transporter permease RHE_PE00280 314516 - 316111 + | alcohol dehydrogenase TERM 237 316880 - 316922 + G 79 -11.1 -3.92602 | gap 1, opp_overlap 316870, overlap 316916 CAAGAGGCAGCTCTG GCGAGCGGCGCGTCCACGCC GCTC GGCGCGGAAGCGGCGCA-GC TTTATGCGCTGTTCG RHE_PE00281 316121 - 317002 + | putative 3-hydroxyisobutyrate dehydrogenase protein fhuC 317789 - 317010 - | ferrichrome-iron transporter, ATP-binding protein TERM 238 317817 - 317834 + r 75 -12.7 -3.05596 | GTTCGGTGTCGCACG GGGAGGG CGAG CCCTCCC TTCCCTGCGAAACTA RHE_PE00283 318648 - 317890 - | hypothetical protein RHE_PE00284 320050 - 318737 - | putative carbohydrate kinase protein TERM 239 318967 - 318945 - G 84 -11.3 -4.13767 | gap 1, opp_overlap 318945 TCGTTCAGGGCAAAA GGCCCC-TCG ACGA CGACGGGGCC TTTGGCGCCGATCAG TERM 240 318945 - 318967 + g 73 -11.3 -3.53811 | gap 1, opp_overlap 318945 TCGTTCAGGGCAAAA GGCCCC-TCG ACGA CGACGGGGCC TTTGGCGCCGATCAG TERM 241 319155 - 319168 + g 93 -9.5 -4.72272 | ATGACCGGCCGGATC GCCGC CTGC GCGGC TTTTTCATCGACAGG TERM 242 320143 - 320127 - R 79 -6.5 -4.80882 | opp_overlap 320137 320138 ATGGCATATGAAAAA GAGTGAC GAG GTCGCTC TGGACGGGCGAATTG RHE_PE00285 320430 - 320110 - | hypothetical protein RHE_PE00286 321434 - 320427 - | sugar ABC transporter, permease protein TERM 243 321228 - 321240 + g 91 -9.1 -4.55118 | opp_overlap 321228 CAGCGCCATGGCAAA GGCGA TCA TCGCC TTTTCTGTGAAGTTG RHE_PE00287 322432 - 321431 - | sugar ABC transporter, permease protein RHE_PE00288 323978 - 322443 - | sugar ABC transporter, ATP-binding protein TERM 244 323924 - 323938 + g 73 -7 -4.3586 | opp_overlap 323922, overlap 323926 GCATTTCCAGAATGG CGGGCG CGT CGCCGG TTTTGCTGTCCGTGA TERM 245 324031 - 324007 - R 90 -14.9 -3.66178 | opp_overlap 324007 324008, overlap 324008 GTGTCGAATGGGAAA TCCCGGCGACC GTC GGCCGCCGGGC TTTTAAACGTCGTTC TERM 246 324007 - 324031 + r 91 -12.7 -4.12902 | opp_overlap 324007 324008, overlap 324008 GTGTCGAATGGGAAA TCCCGGCGACC GTC GGCCGCCGGGC TTTTAAACGTCGTTC TERM 247 324030 - 324008 - R 88 -18.4 -2.79492 | opp_overlap 324008 324007, overlap 324007 TGTCGAATGGGAAAT CCCGGCGACC GTC GGCCGCCGGG CTTTTAAACGTCGTT TERM 248 324008 - 324030 + r 85 -16.2 -3.07259 | opp_overlap 324007 324008, overlap 324007 TGTCGAATGGGAAAT CCCGGCGACC GTC GGCCGCCGGG CTTTTAAACGTCGTT RHE_PE00289 325046 - 324051 - | sugar ABC transporter, substrate-binding protein TERM 249 324876 - 324896 + g 80 -14.7 -3.1506 | opp_overlap 324869, overlap 324850 324891 GTAGATGACCTCTAC GCCGCCGAG CTC CTTGGCGGC TTCCTGGGCGCCTTT RHE_PE00290 325906 - 325094 - | DeoR family transcriptional regulator TERM 250 325478 - 325490 + g 91 -9.1 -4.64598 | GATCGCGCCGCCCGG CACCG TCA CGGTG TTTTTGGAATGCTTC TERM 251 325643 - 325658 + g 90 -8.2 -4.91459 | overlap 325641 GAGATCGACGGCTGC GCGTGC AATT GCGCGC TTTTTATCGATGTTG TERM 252 326611 - 326629 + G 75 -11.6 -3.60296 | overlap 326627 CGAGATCGGGTGGCT GCCCTGGC GTC GCCCGGGC TTTCAGCTCGGCCTC RHE_PE00291 326105 - 328201 + | short chain dehydrogenase TERM 253 328191 - 328201 + F 76 -4 -4.8622 | GCAACGTGCAGAGCT TTAC GCG GTAA TTTTTGATTGGCGGC TERM 254 329705 - 329660 - g 74 -5.4 -4.62069 | gap 3, opp_overlap 329663, overlap 329661 CGGCTACCGCAAAAA GGTGGCCGCCGAGCGTCCGGC GTCCGTT GCCGG-CGG-CGGCGGC-ATC ATCTGAGCTGCCGGG RHE_PE00292 328419 - 329711 + | putative sugar isomerase protein TERM 255 329774 - 329730 - T 71 -7.8 -4.15044 | gap 1, opp_overlap 329757, overlap 329731 329758 GCCGGGCTGAATAAA GTGTGGTCGCCGGCAGCGC GGGGTGAA ACGCTGCCGGCAATCGC-C GCTCATGGTTTCCAG RHE_PE00293 330235 - 329777 - | hypothetical protein TERM 256 331071 - 331053 - g 83 -13.2 -3.86897 | opp_overlap 331051 331046 CGCAGGCGGCAGAAA TCGCCATC GTC GATGGCGA GCTTGGCTTCGTCGT RHE_PE00294 330344 - 331213 + | ECF subfamily RNA polymerase sigma factor RHE_PE00295 331387 - 332595 + | dihydroorotase RHE_PE00296 333063 - 332617 - | putative plasmid stability protein RHE_PE00297 333314 - 333060 - | putative plasmid stabilization protein RHE_PE00298 334224 - 333385 - | IclR family transcriptional regulator TERM 257 334148 - 334175 + g 70 -12.6 -2.91728 | overlap 334142 CGGGCGCGCCGCGCG CCCTTGCCGCCG GCTT CGGCGGCCAGGC TCTCATCTTCGGAGT RHE_PE00299 334375 - 335232 + | oxidoreductase TERM 258 335340 - 335390 + T 90 -18.3 -3.09516 | AGTGTGGCTTGCCGT AGC-CGCCGCCGGTCGGCGTCGTGA CGA TCACGGCGTCG-CCGGCAGCGAGCA TTGCCTGGTCGCAGC RHE_PE00300 338934 - 335323 - | N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein RHE_PE00301 339020 - 339547 + | hypothetical protein TERM 259 339563 - 339522 - f 72 -13.1 -2.53715 | gap 1, opp_overlap 339528 339561, overlap 339521 339524 339528 339553 GCCATTACGATCAAG CAG-CAAGGGCCGCCGCC TCTTTAT GACGACAGCCCTTGTCTG GGGCAGGGACAGATC RHE_PE00302 339544 - 339912 + | hypothetical protein RHE_PE00303 339943 - 340566 + | TetR family transcriptional regulator RHE_PE00304 341412 - 340867 - | putative cpaA pilus assembly protein TERM 260 341086 - 341074 - G 73 -3.3 -4.80167 | GAGCAAAAACGAAAA CGGCA GCA TTCCG TGCCATCCGACAAAA TERM 261 341147 - 341103 - G 80 -5 -4.85599 | gap 2, opp_overlap 341110, overlap 341121 341145 341146 GCCATCCGACAAAAA GGCCGATC-G-GCAGGAAAAGC TTG GCGTCTCCTGCGCCAAACAGCC GGAACGCCCAGAGCG TERM 262 341143 - 341121 - G 73 -7 -4.26076 | opp_overlap 341110, overlap 341103 CGATCGGCAGGAAAA GCTTGGCG TCTCCTG CGCCAAAC AGCCGGAACGCCCAG TERM 263 341489 - 341500 + H 77 -7.2 -4.4261 | CTCGGACTTTTATGA CCCG TCCT CGGG TTTTGGTCTTAACCA TERM 264 341874 - 341892 + H 73 -5.2 -4.62069 | overlap 341867 341875 GGCCTGATGCACCTC AGCTGCTT CCT GAGCAGCG TTTTTGAGCTGAAGA TERM 265 341903 - 341933 + H 80 -14.9 -2.52543 | opp_overlap 341910, overlap 341906 341910 CAGCGTTTTTGAGCT GAAGAGAGGGGTT TTGTT AACCCCTTTCTTC TAAATTAGCAGCAAT TERM 266 341906 - 341930 + H 72 -10.8 -3.41878 | opp_overlap 341910, overlap 341903 341910 CGTTTTTGAGCTGAA GAGAGGGGTT TTGTT AACCCCTTTC TTCTAAATTAGCAGC TERM 267 341910 - 341926 + H 77 -8 -4.35604 | opp_overlap 341910, overlap 341906 341903 TTTGAGCTGAAGAGA GGGGTT TTGTT AACCCC TTTCTTCTAAATTAG RHE_PE00305 341987 - 342901 + | putative cpaB pilus assembly protein pilQ 342957 - 344444 + | cpaC pilus assembly Q protein RHE_PE00307 344428 - 344733 + | hypothetical protein TERM 268 345149 - 345170 + G 80 -5.1 -4.82901 | gap 1, opp_overlap 345157, overlap 345151 GAGGCCGGCAACGAT GC-CGGAAAC ACC GTTACCGTGC TTTTTCTGAAGAGCA RHE_PE00308 344825 - 346426 + | hypothetical protein RHE_PE00309 346423 - 346902 + | hypothetical protein RHE_PE00310 346983 - 347522 + | hypothetical protein TERM 269 348072 - 348082 + G 82 -3.2 -5.18726 | CCGCGGATTGACTTG TTCG ACA CGGA TTTTTGTTCTGGGGC RHE_PE00311 347550 - 348692 + | putative pilus assembly protein RHE_PE00312 348689 - 349252 + | hypothetical protein RHE_PE00313 349269 - 350699 + | cpaF pilus assembly protein, ATPase CpaF RHE_PE00314 350696 - 351649 + | putative tadB pilus assembly protein RHE_PE00315 351657 - 352601 + | putative tadC pilus assembly protein TERM 270 353807 - 353824 + G 71 -4.9 -4.50943 | AGCGTCTTGCTATCA TCCGAAA TATC TTTTGGA TTTTGTCGGTTCTTA RHE_PE00316 352617 - 353921 + | hypothetical protein TERM 271 354378 - 354402 + G 76 -5.7 -4.58395 | overlap 354378 354379 GGCTTTGGTCCTGAG C-GCGCCCGGC AAGGA GCCG-GCGCAG TTTTTCGCACCTCGC RHE_PE00317 353989 - 354552 + | hypothetical protein RHE_PE00318 355182 - 354664 - | hypothetical protein TERM 272 355653 - 355668 + G 76 -6.2 -4.66833 | AGTGCCACCGTCCTG TTGATG CTTG CATCAA TTTTTGGGATTCGAG RHE_PE00319 355440 - 355946 + | hypothetical protein RHE_PE00320 356420 - 355983 - | hypothetical protein TERM 273 356520 - 356483 - R 71 -7.6 -4.15044 | gap 1, opp_overlap 356482 TGCCTGGCGAAGAAA CTTCT-CCCCTGGGCGA AAATA TCGCCCCGGGGTAGTCG GCTTGCTGTCAGCAG RHE_PE00321 356840 - 356529 - | hypothetical protein TERM 274 357228 - 357258 + G 74 -11.9 -3.53012 | gap 1 TGCTCGAAGGCCGGG CG-ATGGAGGAGGC GCGT GCCTCCTCCAAACG TTTGCGGGAAGGGCG RHE_PE00322 357074 - 358444 + | hypothetical protein TERM 275 359231 - 359265 + G 74 -14.2 -2.62983 | opp_overlap 359241, overlap 359239 CAAATGCCTCGAGAT GTGCGAGAGAGCCGGC TAT GCCGGCCCTTTCACGC TGATCTACGACTCAC TERM 276 359239 - 359257 + G 75 -11.6 -3.5882 | opp_overlap 359241, overlap 359231 TCGAGATGTGCGAGA GAGCCGGC TAT GCCGGCCC TTTCACGCTGATCTA TERM 277 359255 - 359241 - g 70 -12.8 -2.88249 | opp_overlap 359239 359231 GAGATGTGCGAGAGA GCCGGC TAT GCCGGC CCTTTCACGCTGATC RHE_PE00323 358512 - 359372 + | hypothetical protein betC 360895 - 359381 - | choline sulfatase protein TERM 278 360630 - 360607 - G 83 -14.6 -3.53444 | gap 1 GCATCTTGCCCGAAA GCGCCGTCTGG TAT CCAG-CGGCGC GCAGATGATGGGCAT TERM 279 360947 - 360960 + H 84 -6.7 -4.9218 | GCGCCTATCATCTCA GCTGT AAAG ACAGC TTTTTCTGATAACTG RHE_PE00325 361021 - 361899 + | LysR family transcriptional regulator RHE_PE00326 362248 - 363042 + | hydroxyacid aldolase protein RHE_PE00327 363726 - 363049 - | hypothetical protein RHE_PE00328 364695 - 363796 - | putative peptide ABC transporter, ATP-binding protein RHE_PE00329 365495 - 364692 - | putative peptide ABC transporter, ATP-binding protein RHE_PE00330 366370 - 365492 - | putative peptide ABC transporter, permease protein RHE_PE00331 367349 - 366372 - | putative peptide ABC transporter, permease protein TERM 280 366979 - 366929 - G 72 -3.9 -4.58395 | gap 2, overlap 366930 366947 366957 CCGAGGTCGCAAAAA CCGCGCCGACGGAGACGACGACA TCGAACC TGCTGCCG-CGCCGCCAG-GCGG CGACGATGCCGAGGA RHE_PE00332 369052 - 367406 - | putative peptide ABC transporter, substrate-binding protein RHE_PE00333 370118 - 369096 - | putative beta-N-acetylhexosaminidase protein TERM 281 370150 - 370169 + r 74 -12.2 -3.1876 | TCAGATGGTCATTTC GGCATGCT TCTC AGCATGCC TTCGTAAATGCCCTT RHE_PE00334 370622 - 370143 - | hypothetical protein TERM 282 370774 - 370795 + r 83 -15.1 -3.05935 | opp_overlap 370774 TGGCACAAGCGAAAA CGGCCCGGG GAGA TCCGGGCCG TTCGATGGGAGCTGT TERM 283 370795 - 370774 - R 100 -14.4 -4.3208 | opp_overlap 370774 TGGCACAAGCGAAAA CGGCCCGG GGAGAT CCGGGCCG TTCGATGGGAGCTGT thiD 371660 - 370827 - | phosphomethylpyrimidine kinase protein TERM 284 371123 - 371167 + g 89 -15 -3.86346 | overlap 371124 CGCCCTTGACCAGCA CGGCGGC-CGGGCCGAGCGCGC GCA GC-TGTTCGGCCTGCGCCGCCA TTTCTGCCCGGCTCG TERM 285 371124 - 371166 + g 90 -18.5 -2.91593 | overlap 371123 GCCCTTGACCAGCAC GGCGGC-CGGGCCGAGCGCGC GCA GC-TGTTCGGCCTGCGCCGCC ATTTCTGCCCGGCTC thiEe 372292 - 371657 - | thiamine-phosphate pyrophosphorylase protein TERM 286 372096 - 372121 + g 76 -13.3 -3.53012 | gap 1 TCATTGACGATGAGG CGGGCGC-CGGT GCC ACCGAGCGCCTG TTTCAAGGCGCGGCC thiM 373065 - 372289 - | hydoxyethylthiazole kinase protein RHE_PE00338 373064 - 373333 + | hypothetical protein RHE_PE00339 373909 - 373325 - | hypothetical protein TERM 287 374684 - 374646 - g 72 -4.5 -4.56775 | gap 1, overlap 374648 374666 ATTCCTGCCGAAAAA CAGGAC-GAGCCGATGAA GGAG TTCATCGGCACTGGCCCC TACATGCTGAAGGAG TERM 288 374682 - 374648 - g 74 -9.3 -3.90048 | gap 1, overlap 374646 374666 TCCTGCCGAAAAACA GGAC-GAGCCGATGAA GGAG TTCATCGGCACTGGCC CCTACATGCTGAAGG RHE_PE00340 374136 - 375662 + | peptide ABC transporter, substrate-binding protein TERM 289 375671 - 375702 + F 91 -12.2 -4.39002 | gap 1, opp_overlap 375663 GAAGTAAGCATCGCC GCCGGTGCCGG-CCC TCC GGGTTCGGCGCCCGC TTTTCTGCCGCATTT TERM 290 375999 - 376035 + G 74 -10 -3.72324 | opp_overlap 375995 CTTCCTCAACATGCC GGTCACTTCGGCGCTG CTCGA CCGCGCCGAGCCGACC TTCTTCCTGACGCTG RHE_PE00341 375742 - 376683 + | peptide ABC transporter, permease protein TERM 291 377000 - 377018 + G 72 -3.8 -4.57073 | gap 1, overlap 376991 376990 GGTGATCGGCGTGAC GCTCGGC CTGCTC GCCG-GC TTTTTCCAGAAGCTC RHE_PE00342 376683 - 377552 + | peptide ABC transporter, permease protein RHE_PE00343 377621 - 378118 + | YjgF family translation initiation inhibitor TERM 292 379303 - 379275 - g 73 -10.9 -3.54424 | overlap 379276 GGTCATCGTCGCAAA CCGCCTGGCCGAG GAA CTCGACAAGGCGC GCGCTTCCAACGAGA TERM 293 379302 - 379276 - g 75 -14.4 -2.72511 | overlap 379275 GTCATCGTCGCAAAC CGCCTGGCCGAG GAA CTCGACAAGGCG CGCGCTTCCAACGAG TERM 294 379374 - 379341 - g 72 -7.3 -4.18762 | gap 1, opp_overlap 379349 379361, overlap 379342 AACCCCGATCGAAAA CCGCAGC-CGCCACCG CTT CGACGGCTTGCTGCGC TGGCCGGATTGATCC selA 378190 - 379386 + | L-seryl-tRNA(Ser) selenium transferase protein TERM 295 380044 - 380058 + G 100 -5.6 -5.52384 | opp_overlap 380043 380045, overlap 380045 AAATGCTGCAGGAAG AGGAGG GGA CCTCCG TTTTTTTCATCACCC TERM 296 380045 - 380057 + G 74 -9.1 -3.90707 | opp_overlap 380043 380045, overlap 380044 AATGCTGCAGGAAGA GGAGG GGA CCTCC GTTTTTTTCATCACC RHE_PE00345 379404 - 381260 + | putative peptide ABC transporter, ATP-binding protein RHE_PE00346 381316 - 382137 + | hypothetical protein TERM 297 382843 - 382793 - g 73 -10.8 -3.60792 | opp_overlap 382803 CGCGGAAGGCGTAAA GCCTCCAACGCCGAGCACCGCCGG ATT CTGGAGGCGATCGCCGCAGGCGGC GAGGCGGATGCACGC RHE_PE00347 382151 - 382942 + | L-asparagine operon transcriptional regulator TERM 298 383072 - 383046 - g 78 -6.5 -4.62069 | TCCTCAGCCGAAAAA GCGCCTCGGAA CTGGT TTTCGAGGAGC TGCGCAATCTCATTC ansR 382994 - 383701 + | L-asparagine operon transcriptional regulator protein TERM 299 384678 - 384654 - g 79 -8.5 -4.35524 | opp_overlap 384674 CGGGGAAACCGAAAA CGCCCGCAA AGTCATG CCGCGGGCG ATCCGCACTGTCGTG ansP 383908 - 385380 + | L-asparagine permease protein ansA 385450 - 386553 + | L-asparaginase II protein aspA 386646 - 388073 + | aspartate ammonia-lyase RHE_PE00352 389049 - 388120 - | putative taurine dioxygenase protein RHE_PE00353 389345 - 389752 + | putative carboxymuconolactone decarboxylase protein RHE_PE00354 391548 - 389887 - | putative beta-fructofuranosidase protein RHE_PE00355 393018 - 391657 - | putative inulin fructotransferase protein TERM 300 392901 - 392917 + g 73 -3 -4.8048 | gap 1, overlap 392902 CGCCGTCATTTGCAT C-GGCAA CGGC TTGCCTG TTTTTAATATCCGCA RHE_PE00356 394215 - 393073 - | sugar ABC transporter, ATP-binding protein RHE_PE00357 395029 - 394229 - | sugar ABC transporter, permease protein TERM 301 394798 - 394782 - G 71 -11.5 -3.48276 | TGGGTCGCGACATAA GCGGCGG GAA CCGCCAC AGCGAGGGAAAGGAT RHE_PE00358 395939 - 395058 - | sugar ABC transporter, permease protein RHE_PE00359 397259 - 396000 - | sugar ABC transporter, substrate-binding protein TERM 302 397278 - 397299 + H 71 -11.5 -3.07962 | opp_overlap 397263, overlap 397276 TCCCTCCCTTGTTCC GCCGGAGGC GCTT GCCTCAGGC TGTTCCAGTGTGGGG RHE_PE00360 397432 - 398457 + | LacI family transcriptional regulator RHE_PE00361 399902 - 398760 - | AraC family transcriptional regulator TERM 303 400761 - 400718 - H 95 -13.3 -4.13816 | TGCATAAAAACAGAA CTAATGCGCGTCGCATAAA TCAAGT TTCATGCGATGCGCGTTAG AAAAGATCGCGTGAA TERM 304 401406 - 401384 - g 72 -4 -4.56597 | opp_overlap 401400, overlap 401388 401389 401397 CGCCGCCCTCAAAAA GGAACGAGAG GAA CTCTCCGCCC TGCGAGAGGAATTGT RHE_PE00362 401079 - 402311 + | hypothetical protein TERM 305 402321 - 402332 + F 72 -5.8 -4.46617 | TTGTAGCGCTGGTTC CGAC CCTA GTCG TTTTGGCTTTCTTTT RHE_PE00363 402458 - 404287 + | putative cellulose synthase (glycosyltransferase) protein RHE_PE00364 405198 - 405683 + | hypothetical protein RHE_PE00365 405680 - 406120 + | hypothetical protein RHE_PE00366 407073 - 406186 - | dienelactone hydrolase protein TERM 306 406770 - 406795 + g 73 -8.1 -4.07568 | TCTCATGCACGACCA CGACGGCGGCG ACTT TGCCGGCGGCG TTTTGGGGGCGGACG RHE_PE00367 407402 - 408559 + | oxidoreductase protein RHE_PE00368 408573 - 409457 + | sugar uptake ABC transporter, permease protein RHE_PE00369 409454 - 410311 + | sugar uptake ABC transporter, permease protein TERM 307 410903 - 410888 - g 74 -6 -4.52101 | opp_overlap 410888 410898, overlap 410890 AACAATCAAGGAAAA GACCGG CATT CCGGGC TTCGGTCTCTCGGCC RHE_PE00370 410385 - 411590 + | sugar uptake ABC transporter, substrate-binding protein TERM 308 411898 - 411871 - g 70 -12 -3.16191 | gap 1, overlap 411889 CGACATCGTCATCAA CGGCGTCAGGGTC AAC GACC-TGCCGCCG GTCAAGCGCGGCATC RHE_PE00371 411683 - 412816 + | sugar uptake ABC transporter, ATP-binding protein RHE_PE00372 413578 - 412994 - | hypothetical protein TERM 309 413289 - 413267 - G 85 -6.1 -5.06414 | overlap 413268 GCTTTCGAAGAAAAA GGCAGGGCG CTTTT CGCCCGGCG GGCTTGGAAGTTTGA RHE_PE00373 413740 - 414225 + | symbiotically induced surface protein RHE_PE00374 414252 - 414476 + | hypothetical protein TERM 310 414483 - 414519 + F 100 -15.1 -5.02074 | overlap 414484 AACCGATAGGATGTT CGGAGGGACCCGCTTAC AGC GTGGGCGGTTCCCTCCA TTTTTTGGCGGATGG TERM 311 414484 - 414518 + F 100 -18.6 -3.60762 | overlap 414483 ACCGATAGGATGTTC GGAGGGACCCGCTTAC AGC GTGGGCGGTTCCCTCC ATTTTTTGGCGGATG TERM 312 414798 - 414812 + G 78 -3.4 -5.09426 | overlap 414795 CTTCTGCTCAATGCT GCGTGG TCG CCGCTC TTTTTTGGACTTCAC tspO 414531 - 415025 + | tryptophan rich sensory protein RHE_PE00376 415022 - 415531 + | hypothetical protein RHE_PE00377 416785 - 415886 - | AraC family transcriptional regulator TERM 313 417134 - 417158 + G 84 -13.6 -3.695 | overlap 417154 417155 GGCCGCCATGATCCC GCTCGACGTG ACTGA CACGTCGGGC TTTCCGCTCTTTACC RHE_PE00378 416958 - 417716 + | dehydrogenase/reductase protein RHE_PE00379 418352 - 417894 - | hypothetical protein RHE_PE00380 418980 - 418354 - | TetR family transcriptional regulator TERM 314 418626 - 418660 + g 74 -2.1 -4.84359 | gap 1 GCATGGCGTACCCCG CCGGAGTGTGA-ATGC TTGC GCGTATAACACCCTGG TTTTTGTCGAACTGC RHE_PE00381 420426 - 419326 - | putative amino acid processing protein RHE_PE00382 421902 - 420427 - | hypothetical protein RHE_PE00383 422415 - 421933 - | hypothetical protein RHE_PE00384 422527 - 422916 + | YigF family translation initiation factor TERM 315 423096 - 423124 + G 76 -8.7 -4.24002 | CGCCGACCGTCACCC GCTTCTGCCGCCG GCT CGGCTGCGAGAGC TTTTCCGATTTCAAG RHE_PE00385 423035 - 423802 + | transcriptional regulator protein RHE_PE00386 423828 - 424604 + | short chain dehydrogenase RHE_PE00387 424792 - 425928 + | sugar transporter, permease protein RHE_PE00388 426004 - 427206 + | ROK family transcriptional regulator RHE_PE00389 428722 - 427226 - | hypothetical protein TERM 316 427570 - 427585 + g 84 -4 -5.14563 | gap 1 ATCGCCCACATATAC TCGC-AG CAT CTCGCGA TTTTTTCCTCGCGCA TERM 317 427702 - 427674 - G 70 -10.1 -3.62096 | opp_overlap 427691, overlap 427677 TCGTACGACCTGAAA GATCGCGACGCGC TTA GCGCGCCTCGCCC GTTCGTCAGCCGCGT TERM 318 429321 - 429351 + G 74 -14.7 -2.63079 | gap 1, opp_overlap 429295, overlap 429319 429318 TGCACGATCAGCGGC GGGCTC-GCGCCGC ATGT GCGGCGCCGAACCC TGGATTATATCGAGG RHE_PE00390 428901 - 429641 + | AraC family transcriptional regulator RHE_PE00391 431321 - 429651 - | beta-N-acetylhexosaminidase protein TERM 319 430957 - 430947 - G 73 -8.2 -4.0371 | GAGGCCGTAGAGAAA GCCG GTG CGGC CGCTCGCCTCGACCG TERM 320 431181 - 431164 - G 90 -14.1 -4.07568 | GCCTGCGGGGCAAAA CCGGCCG GCAG CGGCCGG CGCGAGGCGACCGTG TERM 321 431576 - 431554 - H 72 -4 -4.71061 | opp_overlap 431554, overlap 431555 ACGCAGAGGGAAAAA TTCGAAAGCG GTT CGCTGCCGAG GTTCTTGAGGCGCAG flaCe 431989 - 432897 + | flagellin C protein TERM 322 432955 - 432994 + F 71 -7.1 -4.33151 | gap 1, opp_overlap 432946 432959 432962, overlap 432961 432962 ATCATATTCGCTGAT CGAACCACGAGCCTGGCC TTTCC GGTCAGGCTCG-GTTGTG TTTTACCTTCTGCTG TERM 323 432961 - 432989 + F 85 -12.4 -3.99228 | opp_overlap 432959 432962, overlap 432955 432962 TTCGCTGATCGAACC ACGAGCCTGGCC TTTCC GGTCAGGCTCGG TTGTGTTTTACCTTC TERM 324 432988 - 432962 - f 76 -13.7 -2.75064 | opp_overlap 432961 432955 432962, overlap 432959 TCGCTGATCGAACCA CGAGCCTGGCC TTTCC GGTCAGGCTCG GTTGTGTTTTACCTT TERM 325 432962 - 432988 + F 83 -15.9 -2.98453 | opp_overlap 432962 432959, overlap 432961 432955 TCGCTGATCGAACCA CGAGCCTGGCC TTTCC GGTCAGGCTCG GTTGTGTTTTACCTT RHE_PE00393 433112 - 434665 + | multidrug ABC transporter RHE_PE00394 435145 - 434735 - | hypothetical protein TERM 326 435317 - 435295 - H 80 -11.2 -3.78022 | opp_overlap 435313, overlap 435276 435313 TGTATACGCAGTAAA CCGCTCCTCG GAA CGAGACGCGG CTCCAGCGTGTTAAA RHE_PE00395 435399 - 435887 + | hypothetical protein TERM 327 436318 - 436333 + G 75 -11.8 -3.65351 | GGCTCGCCGCTCTAC GGCGGC ATCA GCCGCC TTTACCTGCGCATCG TERM 328 437137 - 437151 + G 73 -2.8 -4.72272 | overlap 437129 437138 GAAGAGCGCTTGCAT GGAAAG CTT CTTTCA TTTTTCGTGCCGGAC TERM 329 438933 - 438915 - g 89 -13.1 -4.18018 | GCGGCTGATGGAAAA GCCGGCG ACCTA CGCCGGC GGGCCCGAAACTCTG RHE_PE00396 436135 - 439440 + | hypothetical protein TERM 330 439558 - 439542 - g 72 -4.4 -4.59773 | gap 1 TCCGATGCCGAAAAA GCGCGCA TTTG TGC-CGC TAACAACGCAGACCT RHE_PE00397 439479 - 440252 + | hypothetical protein RHE_PE00398 441060 - 440314 - | GntR family transcriptional regulator TERM 331 441168 - 441157 - R 72 -3.6 -4.81249 | overlap 441160 CTGGAAAGGCAAAAA CGAC GCGA GCCG AGACTCTGTGCTTCG RHE_PE00399 441828 - 441202 - | putative 2-deoxy-D-gluconate 3-dehydrogenase protein TERM 332 441854 - 441902 + r 75 -13 -3.02144 | gap 1, overlap 441839 CCGACGGCGGCGATC GCGGCACCGGCCTCGGCGAGCGC CGCT GCGATTGCCT-GGCCGATGCCGG TATTGGCGCCGGTGA RHE_PE00400 442798 - 441962 - | 5-keto-4-deoxyuronate isomerase TERM 333 443016 - 443043 + r 78 -12 -3.53012 | opp_overlap 443016 GCCAAAACGAAAAAA GCCTGCCGCG GGAGGAGG TGCGGCAGGC TTTCGGAAAACCGAA TERM 334 443043 - 443016 - R 100 -11.3 -5.46698 | opp_overlap 443016 GCCAAAACGAAAAAA GCCTGCCGC GGGAGGAGGT GCGGCAGGC TTTCGGAAAACCGAA TERM 335 443299 - 443276 - R 82 -8.1 -4.67641 | AGTGCAAAAGCAAAA CGCCCGCTC GGGAGG AAGCAGGCG CTGGGCAAGTCTCGA RHE_PE00401 443482 - 443336 - | hypothetical protein RHE_PE00402 444626 - 443646 - | DNA polymerase III subunit epsilon TERM 336 444451 - 444421 - G 100 -14.7 -4.62471 | gap 1, opp_overlap 444430 CCGAACCGCGAAAAA CCCGGCCGTCTCGC TGCC GCGAC-CGGCCGGG CGGCGAGTTTCCGCA TERM 337 444430 - 444458 + g 70 -10.3 -3.53811 | gap 1, opp_overlap 444421, overlap 444451 GAAAAACCCGGCCGT CTCGCTGCCGCG ACCGGC CG-GGCGGCGAG TTTCCGCAGGATGCG TERM 338 445703 - 445718 + G 71 -4.6 -4.4078 | TGATCTGGAGCTGGC GGGAGC AAAG GCTGCC TTTTCGTTCGCCGCG RHE_PE00403 444744 - 446012 + | putative amine oxidase protein RHE_PE00404 446238 - 447269 + | oxidoreductase protein TERM 339 447295 - 447323 + T 79 -14.6 -2.84298 | opp_overlap 447239, overlap 447290 447291 TGGATTTGCAGCGAC ACCGTCCGCTTC CTGCC GAAGCGGACGGA TCATTCTCCGATGTC TERM 340 447381 - 447360 - T 93 -8 -5.17576 | opp_overlap 447360, overlap 447352 CATCAATGCAAAAAA GCCGCCAT GTTTCT ATGGCGAC TCTTCGGCCTTGGGA RHE_PE00405 449187 - 447403 - | amino acid transporter, permease protein TERM 341 450020 - 450038 + G 76 -13.1 -3.44848 | overlap 450018 GGATATCCGCATCCG GGCGGCG AGCGC CGCCGCC TATTTCGTGCGCGCC RHE_PE00406 449436 - 451805 + | aminomethyltransferase protein TERM 342 451817 - 451856 + T 75 -12.8 -3.05844 | opp_overlap 451826 GTAACCCATTTCGCG TTCAGGAGACGACGATCG GTTC CGTCCGTCGTCTCCCGGA TATTGCCCTCAAGCG minE 452125 - 451865 - | cell division topological specificity factor MinE minD 452937 - 452122 - | cell division inhibitor MinD protein minC 453694 - 452969 - | septum formation inhibitor TERM 343 453590 - 453560 - G 88 -8.8 -4.72272 | overlap 453543 CCGTCCGAGGAAAAA GCCGGCCGAGCGGG CAG CCAGATCGTCCAGC CTGGCCAACCAATCA RHE_PE00410 454507 - 453905 - | putative chemotaxis protein RHE_PE00411 456024 - 454687 - | monooxygenase protein RHE_PE00412 457173 - 456133 - | hypothetical protein TERM 344 457249 - 457209 - R 77 -11.9 -3.32022 | overlap 457215 GCCGTCAGAGATCAA GATGAAGCGTGTTTCCCTC GAA GCGGGAAACACAGATCATC ACCTTGCTGCCGGAT RHE_PE00413 458139 - 457198 - | ferredoxin protein RHE_PE00414 458765 - 458160 - | hypothetical protein RHE_PE00415 459802 - 458777 - | aminomethyltransferase protein folDe 460902 - 460003 - | methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein purUe 461790 - 460906 - | formyltetrahydrofolate deformylase TERM 345 461864 - 461824 - R 74 -11.2 -3.24924 | gap 1, overlap 461822 CTTTCAGGTATAAGA GTC-CGGCCATGCCGAGCT GTCC AACCCGGCATGGCAAAGAC GTCGGTCCGGCTGCT glnT 463186 - 461879 - | glutamine sinthetase protein TERM 346 463259 - 463237 - R 76 -13.4 -2.8655 | GTTATGGATATGAGA CGGCCGGG ACATGTG CCCGGCCG GTAGAAATCAAAAGC glxD 464595 - 463267 - | glutamate synthase large subunit 2 protein glxC 465296 - 464610 - | formyl-methanofuran dehydrogenase domain-containing protein TERM 347 464683 - 464706 + g 73 -8.8 -4.08216 | gap 1 CGCTTGAATTCTTCG GGCCTGACGTC CGT GACGCC-GGCC TTTTCAAGCAGCTCG glxB 466258 - 465353 - | amidophosphoribosyl transferase protein RHE_PE00422 466920 - 466348 - | MerR family transcriptional regulator TERM 348 466775 - 466741 - G 85 -5.7 -5.02074 | gap 2, overlap 466742 GTAGCGGCGAAAAAA GGCTGTCAACGGAACGC CGA GCG-CCCG-CGACAGCG ATTGCAGCGTCGTCA glxA 468004 - 467111 - | AraC family transcriptional regulator soxBe 468170 - 469420 + | sarcosine oxidase beta subunit protein soxDe 469433 - 469714 + | sarcosine oxidase delta subunit protein TERM 349 470421 - 470440 + G 76 -8.6 -4.15565 | gap 1 ACTGGCGAATGTGCG CCGTC-TGC CGC GCACGACGG TTTTCGGCTGGTACG TERM 350 472216 - 472183 - g 74 -5.1 -4.56597 | gap 1, overlap 472185 472186 GCCGCCGGCGAAAAA CACG-GCATCTGCGCC TAC GGCGCCGAAGCGCTCG GCGTCCTGCGCATCG soxAe 469711 - 472665 + | sarcosine oxidase alpha subunit protein soxGe 472658 - 473203 + | sarcosine oxidase gamma subunit protein RHE_PE00428 473760 - 473344 - | hypothetical protein TERM 351 473754 - 473742 - G 100 -9.1 -5.4505 | opp_overlap 473741 473742 GCGCCGAATAAAAAA GTGCG TAT CGCAC GTTCATGTGAGGCTC RHE_PE00429 474234 - 473815 - | hypothetical protein TERM 352 473847 - 473860 + g 77 -3.7 -4.83615 | overlap 473846 TGTTCAGGACCCCTT CGTCG ACGA CGCCG TTTTTATAGGACGTG TERM 353 473948 - 473959 + g 85 -5.8 -5.0916 | GTGGCGGGTACCTTT GTGC CATT GCAC TTTTTATATTCGCCC RHE_PE00430 476010 - 474733 - | mandelate racemase protein RHE_PE00431 476823 - 476089 - | short chain dehydrogenase/reductase family oxidoreductase RHE_PE00432 477117 - 477902 + | IclR family transcriptional regulator RHE_PE00433 478139 - 478828 + | putative metal-dependent hydrolase protein TERM 354 479249 - 479229 - g 81 -3.9 -4.96106 | CAGAAATACGAAAAA GGCTCCAAC CGC GTTTCAGCC AGCATGCTGGTTGAA TERM 355 479425 - 479414 - g 75 -4.4 -4.72272 | overlap 479418 CTTCTCGATCAAAAA CGAA GCTC TTCG CAAGAAGATCCTGAA RHE_PE00434 479091 - 479495 + | Cro/CI family transcriptional regulator RHE_PE00435 479540 - 479902 + | hypothetical protein RHE_PE00436 480611 - 479868 - | hypothetical protein RHE_PE00437 481870 - 480608 - | hypothetical protein TERM 356 481111 - 481098 - G 71 -5.9 -4.3898 | opp_overlap 481104 ATGACGGCCAGAAAA GCCGG AACG CCGAC ATCGGTGGTCATGTC tfuA 483969 - 482131 - | trifolitoxin synthesis protein TERM 357 483375 - 483427 + g 72 -14.1 -2.7386 | gap 1, overlap 483390 CTGCCGGGATCAGGC CGAGTTCGCGGGCGAGCGCGGTGG TGCTTT CCTCCG-GCTCGGCGTCGAACTCG TCCTTCAGCTGGCTT TERM 358 483857 - 483888 + g 95 -10.8 -4.58283 | gap 1 ATGCTTTGCTCGATG CGCGCCAGCAG-CTG GCG CAGACTGCCTGCGCG TTTTTCCGGCGCTTC nadC 485219 - 484353 - | nicotinate-nucleotide pyrophosphorylase TERM 359 484483 - 484436 - G 86 -12.6 -3.97331 | gap 1, overlap 484423 AACCGACCGAAATAA GGTCGACGCCGGAAGCGG-CGAT TGC AGCGGCCGTTGCCGGCGTCACCC GGCCCGATGCCTCAG nadB 486762 - 485221 - | L-aspartate oxidase nadA 487730 - 486759 - | quinolinate synthetase TERM 360 486818 - 486834 + g 71 -5.8 -4.26903 | overlap 486800 486807 CGATTGCCGGATCGA CCGTCA CTTCA TGGCGG TTTTCCTCAAGTGCG RHE_PE00442 488624 - 487800 - | hypothetical protein TERM 361 488807 - 488830 + r 83 -16 -2.93723 | opp_overlap 488802, overlap 488802 GGAGAAGGGACTCGC CGGGCAGGCG TCAG CGCTTGCCCG TCTCGTTGGTCAGCC RHE_PE00443 489629 - 488817 - | ketopantoate hydroxymethyltransferase protein mocFe 490884 - 489658 - | ferredoxin reductase protein TERM 362 490116 - 490126 + g 79 -8.2 -4.3208 | GGAGATAGGTGTCGA CGGC AAT GCCG TTTTCGATTGTAAGC TERM 363 490734 - 490761 + g 73 -12.6 -3.15544 | opp_overlap 490752 GATCGCCCGCATCGG CGGCAGCCGCCT TCGA AAGCGGCGGCCG TTCATAAGGGTGAAG mocEe 491209 - 490895 - | ferredoxin of the Rieseke type protein mocD 492320 - 491232 - | hydrocarbon oxigenase protein TERM 364 492734 - 492707 - g 71 -13.4 -2.64155 | gap 1, overlap 492688 492704 492703 CGCCCGCGAAATCGA GGCGGCGGCG-CG CGC CGTCACCACCGCC CGTCTGCAGATCCAG TERM 365 493190 - 493206 + G 72 -7.9 -4.12532 | opp_overlap 493188 493190 493191, overlap 493191 GCTGCTGCAGAAACA TCCCGAC CTC GTCGGGC TTTATGTCTGCGGCG RHE_PE00447 492450 - 493478 + | LacI family transcription regulator RHE_PE00448 493642 - 494454 + | putative sugar epimerase protein TERM 366 494472 - 494513 + T 90 -15.2 -3.61517 | CCCACGGGTACGCTT CTCTTCATGATCGGCCGC CGGCGA GCGGCCGATCATGAGACG TTATTCCCGGCCCCT cobM 495272 - 494514 - | precorrin-4 C11-methyltransferase protein cobL 496509 - 495277 - | precorrin-6Y C5,15-methyltransferase (decarboxylating) protein TERM 367 496665 - 496689 + Gr 73 -6.4 -4.36914 | gap 1 TCCGTATCGGTGGTT TCGG-CGGTGC CATG GCGCTGGCCGA TTTTCTGAAAGCCGG cobK 496508 - 497278 + | cobalt-precorrin-6x reductase cobJ 498006 - 497242 - | precorrin-3B C17-methyltransferase cobI 498734 - 498003 - | precorrin-2 C(20)-methyltransferase cobH 499363 - 498731 - | precorrin-8X methylmutase cobG 500745 - 499366 - | sulfite reductase, beta subunit (hemoprotein) protein TERM 368 499418 - 499447 + g 74 -9.9 -3.68988 | gap 1, opp_overlap 499420 CCAAGCCGTGTAAGG CAGGCG-GCGGCCG ATT CGCCAGCGCGCCTG TTGTCTTCGATGGAC TERM 369 499736 - 499748 + g 83 -4.8 -5.00884 | overlap 499708 499707 GCGCCGGCGCAGGCT GCGA CATAT TCGC TTTTTTCGCCGGGGT cobF 501573 - 500809 - | precorrin 6A synthase TERM 370 502453 - 502463 + G 74 -4.6 -4.66609 | opp_overlap 502453 GTGATCGCCAGAAAC CGGC CGA GCTG TTTTTCCGTCGCGTC repAe 501807 - 502973 + | plasmid partitioning protein RepAe TERM 371 503861 - 503895 + G 88 -16.4 -3.27525 | opp_overlap 503859 503871, overlap 503870 503876 AATTCCTTTACAATC GCGTTGAAGACCGGCG ATG CGCCGGATTTCGGCGC TTACATTTCACGCCG TERM 372 503885 - 503871 - g 71 -12.8 -3.02461 | opp_overlap 503870 503861 503876, overlap 503859 CAATCGCGTTGAAGA CCGGCG ATG CGCCGG ATTTCGGCGCTTACA repBe 502970 - 503965 + | plasmid partitioning protein RepBe TERM 373 504015 - 503975 - f 81 -10.6 -4.10161 | gap 1, opp_overlap 503992, overlap 503982 GAGTAGGCCGCAAAA GAAAAAAGCCTCCG-AACG TTGC CGTCGCGGAAGCCTTTCTC ATATCTGGACAATCT TERM 374 504008 - 503982 - f 100 -7.3 -5.79595 | gap 1, opp_overlap 503992, overlap 503975 CCGCAAAAGAAAAAA GCCTCCG-AACG TTGC CGTCGCGGAAGC CTTTCTCATATCTGG repCe 504120 - 505334 + | plasmid replication protein RepCe SEQUENCE gi|86360734|ref|NC_007766.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence (length 642517) panC 709 - 1602 + | pantoate--beta-alanine ligase panB 1599 - 2420 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase oxyR 3414 - 2500 - | hydrogen peroxide sensing transcriptional regulator protein, LysR family katG 3559 - 5745 + | catalase protein TERM 1 5763 - 5792 + F 100 -22.1 -4.60487 | overlap 5765 GGTTCCGCCAATTTT GCCCGGGCGCGGC TTCG GCCGCGCCCGGTC TTTTTGCGACTCCTC TERM 2 5765 - 5790 + F 100 -23.3 -3.91506 | overlap 5763 TTCCGCCAATTTTGC CCGGGCGCGGC TTCG GCCGCGCCCGG TCTTTTTGCGACTCC TERM 3 6592 - 6573 - g 86 -8.6 -4.57569 | gap 1, overlap 6575 GCAGCTCCTGAAAAA CGGAATCCG CGT CGGAT-CCG TCTCGCCAGGCCCTG rdh 6055 - 6780 + | ribitol 2-dehydrogenase protein TERM 4 6834 - 6877 + G 100 -24.8 -3.9712 | gap 1 TGACTGCGGGAGGAT GTGGACAGGCGTGCCGTGTGG GTG CCACACGGCAC-CCTATCCAC TTTATCCTGAGGTCC RHE_PF00006 6832 - 7824 + | hypothetical protein RHE_PF00007 8353 - 7904 - | hypothetical protein RHE_PF00008 9152 - 8493 - | oxidoreductase protein RHE_PF00009 9305 - 10216 + | LysR family transcriptional regulator TERM 5 10504 - 10527 + G 71 -9 -3.73068 | gap 1 AGATGGTCGCACATG TCTTCCGCTTC CGG GAAG-GGAAGA TTGTTCGCTTCGACA RHE_PF00010 10206 - 10559 + | hypothetical protein RHE_PF00011 11662 - 10694 - | zinc-dependent oxidoreductase protein RHE_PF00012 11716 - 12132 + | thioesterase protein TERM 6 12510 - 12548 + GF 75 -11.1 -3.41878 | gap 2, opp_overlap 12479, overlap 12495 12482 12490 GCCGAGATCGGCCGC GGGCTCGGCATTCCTGTGA TCG TCGCCGGAA--CCGAGCCC TTCTCCCTTACAGCA RHE_PF00013 12135 - 13652 + | putative long-chain-fatty-acid--CoA ligase protein TERM 7 13792 - 13778 - gT 71 -8.5 -3.86346 | overlap 13779 GCATCCTTGCAGAAA CGGGC GTCGG GCCCG ACGCCATCGACGACG TERM 8 14779 - 14821 + GT 71 -5.5 -4.36914 | GCCATGATCGGCATC GGCGG-CGGCATCGGGCTCAC CGC GTT-GTTCGAGGCTGTCCGCC TTTTCTGAGAAGACC phbAf 13624 - 14829 + | acetyl-CoA acetyltransferase (beta-ketothiolase) protein RHE_PF00015 15660 - 14842 - | LysR family transcriptional regulator RHE_PF00016 15948 - 16409 + | hypothetical protein RHE_PF00017 16863 - 17627 + | hypothetical protein RHE_PF00018 17675 - 18088 + | hypothetical protein TERM 9 18097 - 18123 + T 100 -22.4 -3.05384 | opp_overlap 18072 18068 18089 18086 CAAGTGACCTCGTCC TCGATGCCCGGC GCC GCCGGGCATCGA TTCCATGCGAGCGCG mdeAf 19422 - 18139 - | methionine gamma-lyase RHE_PF00020 20614 - 19535 - | putative ribonuclease protein RHE_PF00021 21750 - 21385 - | hypothetical protein RHE_PF00022 22494 - 22159 - | hypothetical protein TERM 10 22712 - 22683 - H 88 -16.5 -3.06171 | overlap 22676 GCCAAGAAGCACATA TCGCCACGTTGTC CGCG GACAACGTGGCGC CCAAGCAGACAGGGA TERM 11 22904 - 22929 + H 83 -14.7 -3.30243 | opp_overlap 22904 TCGGTCACTATCGAA GCCCGGCGC ACTCTCCC GCGCCGGGC TTCTGCCAGCTCGAT TERM 12 22929 - 22904 - H 83 -15.4 -3.09516 | opp_overlap 22904 TCGGTCACTATCGAA GCCCGGCGCA CTCTCC CGCGCCGGGC TTCTGCCAGCTCGAT RHE_PF00023 23286 - 23726 + | hypothetical protein TERM 13 24485 - 24513 + F 71 -8.2 -3.89893 | gap 1, opp_overlap 24466 24484 24485, overlap 24488 TTGAGGCAACCAAAG GAAGCGACGGCTT TTCA AAACCG-CGCTTC TTCTTATGATCTTGT RHE_PF00024 24619 - 25230 + | hypothetical protein RHE_PF00025 26189 - 25251 - | hypothetical protein RHE_PF00026 27210 - 26176 - | hypothetical protein TERM 14 26977 - 26961 - G 83 -9.3 -4.35524 | overlap 26963 GCGTGAAATTCAAAA GTGCCGC CGT GCGGCGC GGCTCGGCGATGCGG RHE_PF00027 27339 - 28034 + | MutT/NUDIX family DNA hydrolase TERM 15 28547 - 28592 + G 72 -12.4 -3.35371 | overlap 28548 GCGAGGCTGGGCCGT CGGTCTCAGCGCCGCCCTCG ACGAGG CGGGAGCGACGCTGGGGCCA TTGATTGCCGCTCTC TERM 16 28548 - 28591 + G 77 -15.9 -2.60901 | overlap 28547 CGAGGCTGGGCCGTC GGTCTCAGCGCCGCCCTCG ACGAGG CGGGAGCGACGCTGGGGCC ATTGATTGCCGCTCT TERM 17 29015 - 29045 + G 74 -12.6 -3.30243 | GGTTCTACTCCGGGG CGGCATCGCGATGG CTG TTATCGCAATGCCG TTGTGGGGCATCGGT RHE_PF00028 28479 - 29366 + | putative transporter, permease protein RHE_PF00029 30376 - 29480 - | hypothetical protein TERM 18 29769 - 29749 - G 71 -4.6 -4.42386 | overlap 29750 CGTTGACGCACAAAA TGGTGACG CGCTC CGCCACCG CCAGCCAACGTCTTG RHE_PF00030 31230 - 30568 - | dihydroxyacetone kinase phosphatase domain-containing protein RHE_PF00031 32190 - 31234 - | dihydroxyacetone kinase kinase domain-containing protein TERM 19 31483 - 31455 - G 72 -11.7 -3.37522 | overlap 31458 AGCCCAGCGAATTAA CAAGCACGGCGAC ACG ATCGCCACGCTCG GCCTTCATCTCCCTG TERM 20 31480 - 31458 - G 76 -9.8 -3.82604 | overlap 31455 CCAGCGAATTAACAA GCACGGCGAC ACG ATCGCCACGC TCGGCCTTCATCTCC RHE_PF00032 34131 - 32287 - | hypothetical protein TERM 21 33286 - 33264 - G 70 -9.8 -3.63425 | overlap 33262 33267 GATCGAAATGAAAGA GAAGCTCGCG AAG CGCGATCTCC GTCAGGAGGGACCTA RHE_PF00033 35162 - 34128 - | oxidoreductase protein RHE_PF00034 36162 - 35164 - | ribose ABC transporter permease RHE_PF00035 37772 - 36222 - | ribose ABC transporter ATP-binding protein RHE_PF00036 38467 - 37769 - | hypothetical protein TERM 22 38480 - 38441 - G 82 -11.4 -4.07568 | overlap 38442 38445 CGGCGTCTCGCAAAA TGCATTGCGGAGGGCGCA ACAT TGCACCCTCCGCAATTGG GGCTGATCAGTTCGT TERM 23 38479 - 38442 - G 78 -14.9 -3.04398 | overlap 38441 38445 GGCGTCTCGCAAAAT GCATTGCGGAGGGCGCA ACAT TGCACCCTCCGCAATTG GGGCTGATCAGTTCG TERM 24 38476 - 38445 - G 91 -21 -2.74605 | overlap 38442 38441 GTCTCGCAAAATGCA TTGCGGAGGGCGCA ACAT TGCACCCTCCGCAA TTGGGGCTGATCAGT RHE_PF00037 39428 - 38487 - | ribose ABC transporter substrate-binding protein RHE_PF00038 40352 - 39525 - | hypothetical protein rpiB 40877 - 40431 - | ribose-5-phosphate isomerase B tpiA 41677 - 40874 - | triosephosphate isomerase RHE_PF00041 43013 - 41679 - | hypothetical protein rbcL 44272 - 43019 - | ribulose bisphosphate carboxylaseoxygenase, large subunit protein TERM 25 45100 - 45060 - g 71 -12.5 -3.01924 | overlap 45068 CACGCTTGCCGAACA CGACGAAATCGTCGACCGC CTC GAGGCCAACGATGTCGACG GCTCGGAGATGGCGC TERM 26 45092 - 45068 - g 71 -8.5 -3.84648 | overlap 45060 CCGAACACGACGAAA TCGTCGACCGC CTC GAGGCCAACGA TGTCGACGGCTCGGA RHE_PF00043 44455 - 45159 + | transcriptional regulator NanR RHE_PF00044 45284 - 45604 + | hypothetical protein TERM 27 45646 - 45623 - f 77 -12.4 -3.35679 | overlap 45624 45627 GCTTGCCATGTACAA GGAACCCCGC TTCG GCGGGGTTCG GCTTCGGGAGAGCCT TERM 28 45645 - 45624 - f 82 -15.9 -2.61264 | overlap 45623 45627 CTTGCCATGTACAAG GAACCCCGC TTCG GCGGGGTTC GGCTTCGGGAGAGCC TERM 29 45642 - 45627 - f 78 -11.8 -3.45945 | overlap 45624 45623 GCCATGTACAAGGAA CCCCGC TTCG GCGGGG TTCGGCTTCGGGAGA TERM 30 45768 - 45786 + F 79 -12.4 -3.58343 | opp_overlap 45721 GCTCCGGCCTCCAAC CTGCGCGG TTC CCGCGTAG TTTGGGCATCCTCGA TERM 31 47086 - 47058 - g 78 -11.7 -3.69333 | overlap 47048 47059 47073 TACAAGTCAGGCAAA CCCGTCATCGACA AAC TGTCGCTGACGGT CCGGGCCGGTGAGAA TERM 32 47085 - 47059 - g 78 -15.2 -2.81118 | overlap 47048 47058 47073 ACAAGTCAGGCAAAC CCGTCATCGACA AAC TGTCGCTGACGG TCCGGGCCGGTGAGA RHE_PF00045 46008 - 47771 + | sucrose ABC transporter, ATP-binding protein cscR 48021 - 48860 + | LacI family sucrose operon repressor RHE_PF00047 48897 - 50186 + | sucrose ABC transporter, substrate-binding protein TERM 33 50563 - 50599 + G 70 -12.2 -3.14564 | gap 1, overlap 50562 50565 50580 TTCTGGATCATCCCG GC-GCAGTGCGGCCTCG CTTT CGCGACCGCGCTGCTGC TTCATCAGAAGCTGC TERM 34 50565 - 50596 + G 72 -13.6 -2.77899 | overlap 50562 50563 50580 CTGGATCATCCCGGC GCAGTGCGGCCTCG CTTT CGCGACCGCGCTGC TGCTTCATCAGAAGC RHE_PF00048 50263 - 51201 + | sucrose ABC transporter, permease protein TERM 35 51763 - 51790 + G 91 -9.2 -4.57837 | gap 1, opp_overlap 51757 GCCGAAGGAGCTGCT GGAAGCCGCCG AGATGGA CGGCG-CTTCC TTTTTCCGGGCCTAT RHE_PF00049 51194 - 52087 + | sucrose ABC transporter, permease protein TERM 36 52672 - 52640 - g 73 -12.5 -3.14132 | opp_overlap 52641 52641 CCGCCTTCGGACGAA CTCGCCGCCCGGGCC GAC GGGCTGGGCGGCGCA TTTTCCGGCTCCGCG TERM 37 52641 - 52671 + G 84 -16 -3.06515 | opp_overlap 52640, overlap 52641 CGCCTTCGGACGAAC TCGCCGCCCGGGCC GAC GGGCTGGGCGGCGC ATTTTCCGGCTCCGC TERM 38 52641 - 52672 + G 100 -14.4 -4.11216 | gap 1, opp_overlap 52640, overlap 52641 CGCCTTCGGACGAAC T-CGCCGCCCGGGCC GAC GGGCTGGGCGGCGCA TTTTCCGGCTCCGCG cscA 52091 - 53809 + | beta-fructofuranosidase protein TERM 39 53861 - 53832 - T 91 -15.7 -3.55622 | gap 1 TGCAATCCTGGCAAA CGC-ACGGCCGCCG GGG CGCCGGCCGTTGCG AAGGATCATGGCGCA RHE_PF00051 54388 - 53885 - | hypothetical protein TERM 40 53986 - 54014 + g 75 -12.3 -3.57462 | GCGTAGCCTGCAGCA GCGGCACGGCATC CTT GAGGCCGAGCTGC TTTGCCCATGCGATC TERM 41 54301 - 54320 + g 72 -7.8 -4.12188 | CGCGGGCCATCTTCG GCAGAGCC TTCA GGATCTGC TTTTCGGCATAGTAG TERM 42 54732 - 54721 - g 84 -2.2 -5.28942 | CATTGTAAAGAAAAA TCCG CAAT CGAA CGGGAGATCGTGGAA RHE_PF00052 54673 - 55200 + | RNA polymerase sigma-E factor RHE_PF00053 55331 - 56656 + | hypothetical protein RHE_PF00054 57065 - 56691 - | hypothetical protein RHE_PF00055 57725 - 57081 - | hypothetical protein TERM 43 57511 - 57491 - G 78 -5.3 -4.70879 | overlap 57501 57502 GGGAAAGCCGAAAAA CGGTGGC AAAGGCG GCCGCCG CAATCAGGGCATTAT RHE_PF00056 58270 - 57722 - | RNA polymerase ECF-subfamily sigma factor TERM 44 58332 - 58321 - R 70 -3 -4.70659 | GGTTACAGCGAAAAA CAAA GATT TTTG AACTGCAGCTCTACC RHE_PF00057 59226 - 58732 - | hypothetical protein RHE_PF00058 59757 - 59245 - | hypothetical protein TERM 45 60224 - 60208 - g 77 -3.7 -4.93296 | CGACGAGCATAAAAA GAAGC TTGAAGC GCTTC AGCAGAGCGACCTGG RHE_PF00059 59918 - 60415 + | hypothetical protein TERM 46 61270 - 61260 - g 76 -8.2 -4.23758 | opp_overlap 61269, overlap 61261 ATGGCAGAGCCAAAA CGGC AAT GCCG ACTGCGTCGTCTTCC RHE_PF00060 60421 - 61404 + | hypothetical protein RHE_PF00061 61512 - 62237 + | hypothetical protein RHE_PF00062 62710 - 62408 - | hypothetical protein TERM 47 62483 - 62495 + g 74 -4.7 -4.56597 | overlap 62484 CGTGATTGCAGCAGT TGGGC AGA GCCCC TTTTTCGCCGACGCC TERM 48 62666 - 62644 - G 71 -6.2 -4.24948 | opp_overlap 62643 62647 62665 CGATCACATTCAAAA CGGTCTGCAG ACG CTGAAGATCG GTTGAATCAAGCGCT RHE_PF00063 63260 - 62889 - | hypothetical protein RHE_PF00064 63900 - 64139 + | hypothetical protein TERM 49 64266 - 64246 - T 72 -6.1 -4.4773 | opp_overlap 64246, overlap 64247 GGAGATGAAGGAAAA CGGTGAAAG AAG CCTTCACCC TTCCCTCGGCAAGCG RHE_PF00065 65634 - 64261 - | putative two-component sensor histidine kinase protein RHE_PF00067 67085 - 67843 + | GntR family transcriptional regulator RHE_PF00068 67868 - 68842 + | C4-dicarboxylate ABC transporter, substrate-binding protein TERM 50 68950 - 68930 - f 74 -12.6 -2.78816 | CGATGGGGCAGCAGA TCCTCGGC ACAAG GCCGAGGA TGACGTCGAGCGAGG RHE_PF00069 69041 - 69613 + | C4-dicarboxylate ABC transporter permease RHE_PF00070 69618 - 71024 + | C4-dicarboxylate ABC transporter permease RHE_PF00071 71035 - 72069 + | zinc-dependent alcohol dehydrogenase protein TERM 51 72116 - 72099 - f 74 -4.8 -4.82901 | gap 1, overlap 72101 CGCGGGCGACAAAAA GGGCAGC ACTCG GC-GCCC CTCAGCTTATTGATC RHE_PF00072 72240 - 73412 + | two-component response regulator protein RHE_PF00073 73511 - 73915 + | putative two-component response regulator protein RHE_PF00074 73942 - 74334 + | putative two-component response regulator protein TERM 52 75185 - 75199 + G 74 -10 -3.71378 | TCCGAGGTCCGGGGT TCGCAG CCG CTGCGA TTTCGCTGTCAGATC cheBf 74453 - 75475 + | protein-glutamate methylesterase protein TERM 53 76382 - 76404 + G 76 -7.7 -4.26076 | TGCCAGCCGCGACGA GGTCCAGAA TCTTT TTCAGGACC TTTTGATCGGCGTGA TERM 54 77773 - 77796 + G 71 -5.9 -4.2558 | opp_overlap 77768, overlap 77774 ACTTGAAGAACCTCC TGGAGGCGA CGCAGA TCGCCACCG TTTTCCTCGACAATG TERM 55 78870 - 78852 - g 75 -4.4 -4.75372 | overlap 78841 78853 ATCACCGAGGAAAAA GCCTCCGC CGA GCGGATGA AGGTTCTCGTCGCCG cheRf 75537 - 79511 + | chemotaxis methyltransferase protein RHE_PF00077 79558 - 79887 + | putative two-component response regulator protein RHE_PF00078 81975 - 80725 - | putative two-component response regulator protein TERM 56 81726 - 81711 - G 79 -9 -4.10657 | CGACAGCCGTCAAAA TTGCCG CCGG CGGCAA AAGGCAGGCGGGAGC TERM 57 82550 - 82568 + G 72 -7.4 -4.19817 | opp_overlap 82552 CGATTATTTCCAGCA GACTTTGG AGA CCAAAGAC TTTTCCGTCGGTACC RHE_PF00079 82176 - 83849 + | putative two-component sensor histidine kinase protein RHE_PF00080 83866 - 84222 + | putative two-component response regulator protein RHE_PF00081 84325 - 84510 + | hypothetical protein TERM 58 84516 - 84550 + T 73 -12.1 -2.9675 | gap 1, opp_overlap 84504 84513 84516, overlap 84513 AAGGCACTGAAACGA GCC-GTCGCTCCGCTG AGTG CAGCGGCCCGACCGGC TATCGTTCTGCCATG TERM 59 84550 - 84516 - T 73 -12.1 -2.94888 | gap 1, opp_overlap 84516 84513, overlap 84504 84513 AAGGCACTGAAACGA GCC-GTCGCTCCGCTG AGTG CAGCGGCCCGACCGGC TATCGTTCTGCCATG RHE_PF00082 85143 - 84550 - | hypothetical protein TERM 60 84856 - 84846 - G 73 -8.2 -4.07687 | AGGTCCTGGTGAAAA CGGC AAG GCCG CGACACGTCCCATTC RHE_PF00083 85696 - 85154 - | hypothetical protein RHE_PF00084 86193 - 85696 - | putative hydrolase protein RHE_PF00085 87063 - 86242 - | hypothetical protein TERM 61 86835 - 86781 - G 95 -9.9 -4.63218 | gap 1 CGCTGCCGAAGAAAA CCGTGCGGATGGCGATGGCCTTGG TGTCGCGG CCGTGGCCGTCGCTATCCGC-CAG CGACTGCGCCAGTCG TERM 62 86986 - 86976 - G 79 -8.2 -4.37886 | CGACGCCGGAGAAAA GGGC CAG GCCC GCCACAAGGAGAAAC RHE_PF00086 87161 - 87634 + | putative NTP pyrophosphohydrolase protein RHE_PF00087 88719 - 87772 - | LacI family transcription regulator TERM 63 88231 - 88257 + g 72 -7.8 -4.19472 | opp_overlap 88225, overlap 88232 GCCGATATAGCCGAA CCGCCGTCGGCC GGC GGCCAACAGCGC TTTTGCCATCTCTTC RHE_PF00088 89246 - 90202 + | UDP-glucose 4-epimerase protein RHE_PF00089 90199 - 90972 + | oxidoreductase protein RHE_PF00090 91040 - 92107 + | sugar ABC transporter, ATP-binding protein TERM 64 93165 - 93209 + G 93 -14.9 -4.07687 | opp_overlap 93175, overlap 93199 93201 TCGCCAAGGACATCC GCACGACGAACTTCCCGATCG GAC CGGTCGGCAAGAGCGTCGAGC TTTTCCAGACGAGCT RHE_PF00091 92282 - 93586 + | sugar ABC transporter, substrate-binding protein RHE_PF00092 93669 - 94595 + | sugar ABC transporter, permease protein TERM 65 94676 - 94719 + G 74 -11.6 -3.40163 | gap 1, overlap 94671 94678 94707 94713 TGAGCTATCTGAACC GCCTGCCG-CGGCGGGTGGTG ATG CTCTACCTGCCGATGGCGGTC TTCGTCTTCGTGCTG TERM 66 94678 - 94717 + G 74 -12.8 -3.26531 | gap 1, overlap 94671 94676 94707 94713 AGCTATCTGAACCGC CTGCCG-CGGCGGGTGGTG ATG CTCTACCTGCCGATGGCGG TCTTCGTCTTCGTGC RHE_PF00093 94606 - 95505 + | sugar ABC transporter, permease protein dapAf1 95643 - 96533 + | dihydrodipicolinate synthase protein RHE_PF00095 96559 - 97218 + | GntR family transcriptional regulator TERM 67 97842 - 97800 - g 71 -9 -3.78934 | GTTGTTCGAGAAGAA GGGGCTTGCCTACCCCACGA GCT TCGAAGAACTGGCAAGCGCC GCAGAAGCGTTGACC TERM 68 98234 - 98206 - g 83 -16.7 -2.91695 | opp_overlap 98217 98221, overlap 98203 GTCATGCCGAAAGGA CCGAAGGCGCAGG CCG CCGGCACCTTCGG CGACGGCCTTGGTGT TERM 69 98539 - 98517 - g 70 -12 -3.14132 | CGTCGGCCTCACCAA CATGATCGGC GGC GCCGATCCTG AAACCGAACTGAAGG RHE_PF00096 97273 - 98601 + | sugar ABC transporter, substrate-binding protein TERM 70 98681 - 98649 - g 77 -12.7 -3.55622 | opp_overlap 98640, overlap 98653 GCCAAGGCGTCGAAA GGAAGGAGCAAACCG GAT CGGTTTGCTCCCAAC TACTGGCCCTTCGTC TERM 71 98677 - 98653 - g 95 -18.7 -3.51411 | opp_overlap 98640, overlap 98649 AGGCGTCGAAAGGAA GGAGCAAACCG GAT CGGTTTGCTCC CAACTACTGGCCCTT RHE_PF00097 98601 - 99539 + | sugar ABC transporter, permease protein RHE_PF00098 99590 - 100354 + | sugar ABC transporter, permease protein RHE_PF00099 100374 - 101357 + | carbohydrate kinase TERM 72 101685 - 101647 - f 70 -9.9 -3.53091 | gap 2, opp_overlap 101647, overlap 101651 ATTTGCGGCTTCAAA TCAATCACTTCCGATAAGC AGT ACTTATCGGAAGTGA--GA CGCTGTCTCCATAAC TERM 73 101683 - 101651 - f 100 -18.7 -3.51232 | opp_overlap 101647, overlap 101647 GCGGCTTCAAATCAA TCACTTCCGATAAGC AGT ACTTATCGGAAGTGA GACGCTGTCTCCATA TERM 74 101819 - 101833 + G 71 -5.6 -4.37886 | overlap 101807 TATTGCGGCCGCTCT CGGACG CCG CATCCG TTTTGTCGCGCCTCG TERM 75 102328 - 102307 - g 73 -12.9 -3.11208 | overlap 102304 GCCGAGTCAAAACTA CCCGGCCGG CCGG CCGCCCGGG ACAAAGATTCGCTGG TERM 76 102455 - 102485 + G 71 -13.2 -3.05463 | TGTTGCTCGATGCCT GGAGCGAGCTGCAG GTC CTGCAGCATGCGCC TTGGCTGGGCCGGCT RHE_PF00100 101779 - 102909 + | hypothetical protein RHE_PF00101 103080 - 104036 + | putative aminotransferase protein TERM 77 105502 - 105476 - g 72 -4.3 -4.67011 | gap 1 AAGTGGATCGAAAAA CGGGACGA-CGC GTCG GCGATCGGCACG CGGTATCGCAGCACA RHE_PF00102 104033 - 107656 + | putative DNA helicase protein TERM 78 107762 - 107790 + F 82 -15.3 -2.97021 | opp_overlap 107763 107766, overlap 107757 107766 107767 TAGGTACTTCTAATA ACAACGAGGGCTG CGG CGGCCCTCGTTGA TGTCCTCTTTCGACG TERM 79 107789 - 107763 - f 95 -16.6 -3.63694 | opp_overlap 107762 107757 107766 107767, overlap 107766 AGGTACTTCTAATAA CAACGAGGGCTG CGG CGGCCCTCGTTG ATGTCCTCTTTCGAC TERM 80 107786 - 107766 - f 89 -12.5 -3.95324 | opp_overlap 107766 107762 107757 107767, overlap 107763 TACTTCTAATAACAA CGAGGGCTG CGG CGGCCCTCG TTGATGTCCTCTTTC TERM 81 107766 - 107786 + F 83 -14.7 -3.33798 | opp_overlap 107763 107766, overlap 107762 107757 107767 TACTTCTAATAACAA CGAGGGCTG CGG CGGCCCTCG TTGATGTCCTCTTTC TERM 82 108858 - 108844 - g 78 -2.8 -5.01732 | opp_overlap 108846, overlap 108846 108849 AATTCCTGGAAAAAA TTGAAG CCA CTTCTA TCATGTGGCGTCGTC RHE_PF00103 108540 - 109535 + | hypothetical protein RHE_PF00104 111848 - 109773 - | hypothetical protein RHE_PF00105 112836 - 111841 - | hypothetical protein TERM 83 112095 - 112071 - G 76 -8.5 -4.18018 | overlap 112084 GGCCGCGACGCAAAA GCGCGTTGC GAAACGT GCCACGCGC CCGCTCGCCATTTAG TERM 84 112462 - 112438 - G 74 -9.1 -3.86897 | CTGATCGCGCAGAAA CGCGCGCCACG CAG CGAGACGGGCG GCGAAGACTGTGACC RHE_PF00106 115577 - 112833 - | hypothetical protein TERM 85 113059 - 113077 + g 82 -3 -5.14563 | overlap 113035 GGTGGCCCCCCCTCG TCGGCCAG CAC CTGATCGG TTTTTTCCTGCGCGC TERM 86 114852 - 114838 - G 74 -2.7 -4.85822 | overlap 114839 ACGACAAACACAAAA GGCCG GTTGG CGGGC GCGAAGTTGGAATTT TERM 87 115115 - 115129 + g 70 -7.8 -4.08767 | CCCGATTGATGACCC CCGCAT AGT GTGCGG TTTTGCCCGACTGAA RHE_PF00107 117318 - 115582 - | hypothetical protein TERM 88 117714 - 117756 + G 100 -21.3 -3.15212 | gap 1 CGTAACGTCGCCAGC CGCCCTTGCCACGGCGCTCG GCCT CG-GCGCCGCGGCAAGCGCG TTCGATGTGATCGTT RHE_PF00108 117472 - 118986 + | DNA (cytosine-5-)-methyltransferase protein RHE_PF00109 118986 - 119567 + | hypothetical protein RHE_PF00110 119557 - 120039 + | DNA mismatch endonuclease protein RHE_PF00111 120036 - 120545 + | hypothetical protein RHE_PF00112 121268 - 120618 - | hypothetical protein RHE_PF00113 122073 - 121546 - | hypothetical protein RHE_PF00114 122149 - 122586 + | hypothetical protein TERM 89 123265 - 123277 + G 70 -7.7 -4.07568 | overlap 123263 GTTCAGCAACGCGTG CGATG GCG CATCG TTTTCAAGAAGACAC RHE_PF00115 122617 - 123735 + | hypothetical protein RHE_PF00116 123732 - 124076 + | putative transcriptional regulator protein RHE_PF00117 125047 - 124175 - | hypothetical protein RHE_PF00118 125727 - 126500 + | hypothetical protein TERM 90 126501 - 126520 + T 78 -13.6 -3.14132 | opp_overlap 126492 126504 ATATCATCGCGCTAA CCAGACCG AAGC CGGTCTGG TTCATGCCAGGAAGA RHE_PF00119 126887 - 126522 - | hypothetical protein TERM 91 126716 - 126730 + gT 70 -10 -3.51232 | opp_overlap 126703 126712, overlap 126713 GACGAAAACGATCAG CCTTCG TTA CGAAGG TTAGTTTCGACGCGC RHE_PF00120 127231 - 126812 - | putative two-component response regulator protein htpG 129436 - 131328 + | heat shock protein 90 RHE_PF00123 131666 - 131779 + | hypothetical protein RHE_PF00125 132822 - 132511 - | hypothetical protein RHE_PF00126 133412 - 133104 - | hypothetical protein RHE_PF00127 134406 - 133963 - | hypothetical protein TERM 92 135994 - 135969 - H 81 -10.5 -4.07687 | overlap 135971 ATTGGCTCGCCAAAA CACCTTTCCAG CTCC CTGGAAAGGTC GTCGGCGGAGGTCAT TERM 93 135992 - 135971 - H 81 -13.1 -3.63744 | overlap 135969 TGGCTCGCCAAAACA CCTTTCCAG CTCC CTGGAAAGG TCGTCGGCGGAGGTC TERM 94 136332 - 136320 - g 73 -3.3 -4.79955 | opp_overlap 136320 ATATCTATAACAAAA CCGAA AAT TGCGG TTGCGTTTCCTGCAG TERM 95 136479 - 136502 + G 100 -11.6 -5.4505 | opp_overlap 136479 CAGCGATGTGAGGAA GGTCGGCGCG GTCT CGCCCCGGCC TTTTTTGTTGGCCGG RHE_PF00128 136269 - 136700 + | hypothetical protein TERM 96 136883 - 136917 + F 86 -11.4 -4.07568 | opp_overlap 136880 136902 136912 GATAGTAGCAACTCG GAAGGCTCGCTTTGAG AAG CTGAAAGCGAGCCCGC TTTTCAAAGCAGCCA RHE_PF00129 137962 - 138264 + | hypothetical protein TERM 97 138396 - 138373 - f 77 -10.2 -3.76413 | gap 1, overlap 138375 CTTCAAAAGTCGAAA CACCGCCGCGC GCC GCTCGGCGG-G CAATTAAATGTATGC TERM 98 138395 - 138375 - f 82 -13.9 -3.46106 | overlap 138373 TCAAAAGTCGAAACA CCGCCGCGC GCC GCTCGGCGG GCAATTAAATGTATG RHE_PF00130 138429 - 138638 + | putative cold shock protein TERM 99 138699 - 138718 + F 100 -11.4 -4.8622 | GCAAGGTCAGTTGAA GGCCAGGC AGAT GTCTGGCC TTTTTCATTCAAGAA RHE_PF00131 138709 - 139191 + | hypothetical protein RHE_PF00132 139259 - 140323 + | fatty acid desaturase protein RHE_PF00133 140344 - 140673 + | hypothetical protein TERM 100 141446 - 141456 + G 71 -8.2 -3.88291 | TGTTTCGCGGACTTG CGGC GCT GCCG TTTCTGCCAGTGATG TERM 101 141626 - 141650 + G 75 -12.1 -3.54475 | opp_overlap 141618, overlap 141627 CGCAATACCGCAGAT GGCTTGGCTGG CGT CCGGCCAAGCG TTATCTGCTGCCCCG TERM 102 141627 - 141649 + G 78 -15.6 -2.72471 | opp_overlap 141618, overlap 141626 GCAATACCGCAGATG GCTTGGCTGG CGT CCGGCCAAGC GTTATCTGCTGCCCC RHE_PF00134 140935 - 142242 + | putative nucleoside-diphosphate-sugar epimerase protein TERM 103 142299 - 142313 + F 78 -4.2 -4.89233 | overlap 142302 GTTCTCCTCGGCACT GGCG CGGGCAT CGCC TTTTTCATGTTGGTC RHE_PF00135 142320 - 142706 + | hypothetical protein TERM 104 142777 - 142791 + T 100 -11.4 -4.87318 | AGTCCAACCGTTTAT GGGGGT TTG ACCCCC TTTTTCGATTTTGCA RHE_PF00136 143379 - 142957 - | hypothetical protein trxBf 143910 - 144815 + | thioredoxin reductase (NADPH) protein RHE_PF00138 145011 - 145559 + | hypothetical protein RHE_PF00139 145599 - 145982 + | hypothetical protein RHE_PF00140 146199 - 147137 + | hypothetical protein RHE_PF00141 147518 - 149140 + | putative kinase protein TERM 105 149827 - 149841 + T 77 -10 -3.99898 | opp_overlap 149826 GCGCTTCTGAATGAC CTCGCT GGA AGCGAG TTTATGCCTTCCTTG RHE_PF00142 150677 - 149928 - | short chain dehydrogenase TERM 106 149991 - 149979 - G 74 -9.1 -3.96148 | GCTGCCGACGATAAA GGACG CCT CGTCC GATGCAAAGAACACC RHE_PF00143 151682 - 151467 - | putative tautomerase protein RHE_PF00144 152451 - 151711 - | 3-oxoacyl-[acyl-carrier-protein] reductase protein TERM 107 153083 - 153063 - g 70 -12.5 -2.89683 | opp_overlap 153082 AGCCCAGCCTATATA GCGAGGCAC GGA GTGCCACGC TCACCCGACGCGATG RHE_PF00145 152538 - 153446 + | LysR family transcriptional regulator TERM 108 153928 - 153943 + F 100 -11.8 -5.14563 | opp_overlap 153915 ACCCCCTCACCCTAA CCCCGC CGGT GCGGGG TTTTTTCGTCCGGCA TERM 109 155289 - 155277 - g 85 -3.3 -5.24531 | AGTGCCGACAAAAAA CGCTT TTC AGGCG GGAACAAATCAGCAG RHE_PF00146 154549 - 155310 + | GntR family transcriptional regulator TERM 110 155396 - 155416 + T 79 -12.5 -3.44982 | overlap 155394 GCAAGTCCCCAACTT GAGCCCCCC TCC GCGGGGCTC TCCTTTTTTGGTTGC RHE_PF00147 156447 - 155656 - | hypothetical protein RHE_PF00148 156561 - 157055 + | hypothetical protein dinB 158143 - 157052 - | DNA polymerase IV RHE_PF00150 158573 - 159334 + | hypothetical protein RHE_PF00151 159378 - 160769 + | putative nucleotidyltransferase protein dnaEf 160769 - 164032 + | DNA polymerase III alpha subunit protein RHE_PF00153 164040 - 164291 + | hypothetical protein RHE_PF00154 164449 - 164760 + | hypothetical protein RHE_PF00155 165433 - 165065 - | MarR family transcriptional regulator TERM 111 165503 - 165526 + H 79 -8.2 -4.37092 | gap 1, opp_overlap 165502 CAATACGAACTAACT GTGTCTCC-GG CAA CCAGGAGATAC TTTTATGAAAGCCGT RHE_PF00156 165531 - 166556 + | putative zinc-dependent alcohol dehydrogenase protein RHE_PF00157 166623 - 167069 + | hypothetical protein TERM 112 168324 - 168304 - g 73 -6.8 -4.26076 | gap 1 TCATCTTCAGGAAAA GCGCCGGCG ATGA CGC-GGCAC CTCAGTTCATACAGT RHE_PF00158 167847 - 168497 + | hypothetical protein RHE_PF00159 169436 - 168681 - | amino acid ABC transporter ATP-binding protein RHE_PF00160 170073 - 169414 - | amino acid ABC transporter permease RHE_PF00161 170741 - 170070 - | amino acid ABC transporter permease RHE_PF00162 171603 - 170818 - | amino acid ABC transporter substrate-binding protein TERM 113 171283 - 171244 - G 70 -10.6 -3.61715 | opp_overlap 171253, overlap 171231 CACGCCGTTGAAGAA GGGCGCGTAGGCGACCGA GAAA TCGATCACCTTCTCGCGC TCCGGATTCTTGCCG TERM 114 171372 - 171391 + g 82 -10.7 -4.09685 | overlap 171363 TCGTGACCGGCACCA GCTCGGC TTTGAC GCCGAGC TTTTCGGCAATGAGG RHE_PF00163 172357 - 171608 - | transcriptional regulator protein TERM 115 171845 - 171814 - G 78 -6.4 -4.57569 | overlap 171816 GCATGGCCTCAAAAA TACGGCAGTGCCCC TCGT GGGACTGCGCCGCA TGAAATTCGGATTGG TERM 116 172710 - 172653 - R 82 -15.7 -2.57132 | gap 1, opp_overlap 172659, overlap 172652 172655 TGTTTCCGCCAGAAT CAGAGGCGATCGGC-TCGGACGTACC TTGTGGG GGTATGCCCATCGCCAATCGCCTCTG CCCTGACGAAAACCT TERM 117 172708 - 172655 - R 74 -12.5 -2.82623 | gap 1, opp_overlap 172659, overlap 172652 172653 TTTCCGCCAGAATCA GAGGCGATCGGC-TCGGACGTACC TTGTGGG GGTATGCCCATCGCCAATCGCCTC TGCCCTGACGAAAAC RHE_PF00164 173533 - 172763 - | amino acid ABC transporter ATP-binding protein TERM 118 173115 - 173134 + g 72 -4.2 -4.58663 | gap 1, overlap 173116 TTGGCGCGGGCGGCA AGGC-CGAC GCG GTCGAGCCA TTTTTCGGCAATGAT RHE_PF00165 174204 - 173545 - | amino acid ABC transporter permease RHE_PF00166 174872 - 174210 - | amino acid ABC transporter permease TERM 119 175029 - 175001 - R 81 -16 -2.54193 | opp_overlap 175026 GATCATCCTAATCCA GCGGAGCGGGAA GCAAG CTCCCGCCCCGC ATCGCGGTCACTTGT RHE_PF00167 175876 - 175037 - | amino acid ABC transporter substrate-binding protein TERM 120 176008 - 175993 - R 84 -3.2 -5.44119 | GGCATGCCAAAAAAA TGCGCA GCGG TGTGCA TGACAGTTTTTTCGG RHE_PF00168 178416 - 176233 - | hypothetical protein TERM 121 177681 - 177659 - G 71 -11.2 -3.50358 | AAATAAGTATCATAA GCCTCCCCGG TCT CCGTGGAAGC GAGCGTCGACGAAGC TERM 122 178278 - 178303 + g 71 -4.7 -4.51174 | gap 1 AATCGCCCATGAATT CGTCGACGGTGG TGA CC-TTGTCGATG TTTTCCTTGTAATAG casR 179273 - 178626 - | transcription regulator TetR casA 179435 - 180067 + | calcium-binding protein TERM 123 180125 - 180172 + F 95 -14.8 -3.96068 | gap 1, overlap 180128 CAATGGCGACGGTCT GAAGCGGCCCGGCGGTTGAGC CGGCAGA GC-CTTCGGCCGGGCCGCTTC TTATTATTCGAATGG TERM 124 180128 - 180169 + F 81 -10.7 -4.09963 | gap 1, overlap 180125 TGGCGACGGTCTGAA GCGGCCCGGCGGTTGAGC CGGCAGA GC-CTTCGGCCGGGCCGC TTCTTATTATTCGAA TERM 125 180273 - 180311 + F 70 -11.6 -3.01791 | opp_overlap 180272 180270 180267, overlap 180275 TCCAGACAATCAGAT CATCGACCGGAGCCGG CTTATGC CCGGCGCCTGACGATG TCTTGCGCCCACAAT TERM 126 180687 - 180667 - g 70 -10.3 -3.55444 | opp_overlap 180678 180679 TCTTCATCGTCGAAA GCGCCGACG GCA CGCCGGTGC TCACCCGGGCCGGCG flgE 180384 - 181676 + | flagellar hook protein FlgE TERM 127 181807 - 181828 + G 75 -12.3 -3.54424 | GACTATGTCAGGCGG GAGGCGTCG ATCA CGACGTCTC TTTCCGGCGCTCAGG flgK 181690 - 183051 + | flagellar hook-associated protein FlgK flgL 183152 - 184198 + | flagellar hook-associated protein FlgL RHE_PF00174 184736 - 184377 - | hypothetical protein TERM 128 185296 - 185319 + GH 93 -13.9 -3.90744 | GTCGATCGTCCCGAA TGCCGGCGA CGACGC TCGCCGGCA TTATTTCACCCGCAA TERM 129 185549 - 185521 - gH 80 -11 -3.82604 | gap 1, opp_overlap 185538, overlap 185538 TCAGGCAATCAAGAA CGATCCCGGCGGC AACA GCCGCTGG-ATCG CAGGGCTCTATGTCA RHE_PF00175 184736 - 185629 + | hypothetical protein RHE_PF00176 185626 - 186726 + | hypothetical protein TERM 130 186765 - 186751 - f 71 -8.6 -3.90318 | opp_overlap 186751 TGAGCATTTGACAAA TGGGAA ATT TTCCCA TTTATTGTCTTTGCG TERM 131 186751 - 186765 + F 82 -8.6 -4.52143 | opp_overlap 186751 TGAGCATTTGACAAA TGGGAA ATT TTCCCA TTTATTGTCTTTGCG TERM 132 186816 - 186857 + F 83 -14.6 -3.27994 | opp_overlap 186808, overlap 186775 CGAAATAGGGCTTGC CGATTGGCTAACGGGT ACCGCCCCAC ACCCGCTAGCCAATCG TTGATCTCCCATTGC RHE_PF00177 186910 - 187224 + | hypothetical protein TERM 133 187524 - 187551 + F 71 -4.2 -4.56775 | overlap 187526 ATAGGATTCCAGAGA TTGCTCGACA ATGTCGGC TGTTGAGCGA TTTTTGCGGCGGGCT TERM 134 188543 - 188555 + G 91 -9.1 -4.56775 | CCTATATGGGCAACC TCGCC GAA GGCGA TTTTTCAACCGAAGT TERM 135 188683 - 188665 - g 82 -11 -4.08939 | overlap 188655 188672 CAAGACGCACAGAAA CGCGAAAC CGC GCTTCGCG ATCAGGAATTCCAGC RHE_PF00178 188245 - 189684 + | methyl-accepting chemotaxis protein RHE_PF00179 190614 - 189730 - | hypothetical protein TERM 136 190066 - 190095 + g 75 -13.5 -3.10715 | GGCGATCGCCGCACT CTTGGCGGTCGCG GTGC CGCCGCCGCCGAG TTCGGTGGTGATGAA TERM 137 190172 - 190215 + g 73 -3.6 -4.78107 | opp_overlap 190196 TCGATCTCCAGCATC GTCATCGAATAGGGCGCGGC AAAC GCCGTGACGAAGTCGAAGGC TTTTTGCTCCTGCTG TERM 138 190719 - 190692 - R 70 -12 -2.71712 | opp_overlap 190712, overlap 190691 CCTCGGCGGTGAAAT CGACCGTCGC GCTGATCG GCGACGGCCG CAAGCCAGTCTCTGT RHE_PF00180 191926 - 190745 - | peptidase protein ocdf 192951 - 191959 - | ornithine cyclodeaminase RHE_PF00182 193949 - 192948 - | threonine dehydratase RHE_PF00183 194733 - 193954 - | putative arylmalonate decarboxylase protein RHE_PF00184 195361 - 194735 - | amino acid ABC transporter permease TERM 139 195269 - 195244 - G 74 -11.9 -3.53444 | gap 1, overlap 195228 CGACCGTCCGGGAAA TG-GCGGCGACC GGG GATCGCCGCGCA ATGGCGAGGCCGAGG RHE_PF00185 196058 - 195399 - | amino acid ABC transporter permease TERM 140 196094 - 196119 + r 82 -15.5 -2.79796 | gap 1, overlap 196081 GATCGTGCGGGCGGA CCGGCCATG-GC AGG GCGCATGGCCGG TGTGCTCACATCAGG RHE_PF00186 196983 - 196135 - | amino acid ABC transporter substrate-binding protein RHE_PF00187 197828 - 197043 - | amino acid ABC transporter ATP-binding protein TERM 141 197185 - 197197 + g 71 -9.1 -3.76224 | opp_overlap 197194 CGGTCGGCAAAGTCG TGGGC AAA GCCCA TTTCGTGGGTGACGA RHE_PF00188 199336 - 197951 - | GntR family transcriptional regulator RHE_PF00189 199438 - 199935 + | AsnC family transcriptional regulator RHE_PF00190 200849 - 200106 - | amino acid ABC transporter ATP-binding protein RHE_PF00191 201691 - 200846 - | amino acid ABC transporter permease RHE_PF00192 202715 - 201882 - | amino acid ABC transporter substrate-binding protein pcaCf 203247 - 202858 - | gamma-carboxymuconolactone decarboxylase protein TERM 142 203166 - 203144 - G 70 -10.6 -3.54638 | overlap 203156 203157 AGAACGTCCTGGAAA GGTGCCGA GAAACCG TCGGCACC GCTGATGGCGCGATC RHE_PF00194 204049 - 203240 - | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase RHE_PF00195 205127 - 204051 - | putative oxidoreductase protein RHE_PF00196 206681 - 205167 - | aldehyde dehydrogenase TERM 143 205542 - 205566 + g 70 -9.9 -3.57615 | CGCATCGACCATGAC CGTCGGCTCGT AGT ACCAGCCGCCG TTTGAGAGATCTTCC RHE_PF00197 207675 - 206683 - | nitrilotriacetate monooxygenase component B protein RHE_PF00198 209642 - 207840 - | hypothetical protein TERM 144 208796 - 208755 - G 72 -12.3 -3.27923 | TGGGAAGATGATCAA CGCACCGACCAGCTGATTG TCGA CCATCAGCTCCTCGATGCG GGCGGAGATCCGGAA RHE_PF00199 210003 - 210605 + | hypothetical protein RHE_PF00200 210637 - 211134 + | AsnC family transcriptional regulator TERM 145 212352 - 212324 - g 70 -12.4 -3.16288 | gap 1, overlap 212322 212313 CAAAGTCGAGGAACA GGTCGCCGA-CGC GCTG GCGCTCGGCGCCC GGCTCGTCACCGGCG RHE_PF00201 211254 - 212750 + | succinate-semialdehyde dehydrogenase protein RHE_PF00202 212845 - 214224 + | hypothetical protein TERM 146 214968 - 215012 + G 71 -12.8 -3.03771 | gap 1 TCCATTCGGCAAGCC GCGGACAGCCGATCGATGTCG TCGC CGATCTCG-TCGGCGGGCCGC TGTTCAACGATCTCC RHE_PF00203 214238 - 215311 + | Zn-dependent oxidoreductase protein RHE_PF00204 215370 - 215762 + | hypothetical protein thuBf 216845 - 215808 - | myo-inositol 2-dehydrogenase protein thuAf 217730 - 216945 - | trehalosemaltose utilization protein thuK 218816 - 217791 - | trehalosemaltose ABC transporter, ATP-binding protein thuG 219658 - 218828 - | trehalosemaltose ABC transporter, permease protein thuF 220644 - 219658 - | trehalosemaltose ABC transporter, permease protein TERM 147 220062 - 220076 + g 73 -11.4 -3.60792 | opp_overlap 220060 220062 CGTCGACGATCAACA CGGCGA CCA TCGCCG TTTCGGGATTAGCGG TERM 148 220684 - 220649 - R 77 -10.3 -3.76402 | opp_overlap 220674, overlap 220632 220674 ATTTCAGTCATGAAA CGCCTCCCCGGTTGC TCGTCC GAAACCGGGCCGGCG GCTTCACAGCCGCCG TERM 149 220705 - 220674 - R 100 -28.8 -3.53012 | opp_overlap 220674, overlap 220649 GTTGCTCGTCCGAAA CCGGGCCGGCGGCT TCAC AGCCGCCGGCCCGG TTCTTACCAGGCGTC TERM 150 220674 - 220705 + r 100 -28.8 -3.61715 | opp_overlap 220649 220674 GTTGCTCGTCCGAAA CCGGGCCGGCGGCT TCAC AGCCGCCGGCCCGG TTCTTACCAGGCGTC thuE 221974 - 220709 - | trehalosemaltose ABC transporter, sugar-binding protein TERM 151 221514 - 221530 + g 72 -4.3 -4.57073 | overlap 221516 TCGTCCCAGGTCTTT GGCGGCA GCT TGCCGTA TTTTTCAAGCAGGTC TERM 152 221516 - 221528 + g 74 -9.1 -3.90048 | overlap 221514 GTCCCAGGTCTTTGG CGGCA GCT TGCCG TATTTTTCAAGCAGG TERM 153 222744 - 222734 - g 76 -6.8 -4.50058 | overlap 222736 TATCGATAATGAAAA TGCG GTG CGCA GGTCCACCGAACACC thuR 222246 - 223259 + | trehalose/maltose transcription regulator repCf2 224671 - 223367 - | plasmid replication protein RepCf2 TERM 154 223929 - 223939 + g 91 -5.4 -5.38398 | TCAATTTGAGATTCA TTGG CGT CCAA TTTTTCTCTTTTTAT TERM 155 224165 - 224213 + g 100 -16.8 -4.2349 | gap 1 GATCGTCAGGCGTTC TCTGGTCGCCCGGAGCAGTTCCC GGTC GGCAACTGC-CTGGGCTGCCAGA TTTTCAATCTCGACC TERM 156 224776 - 224815 + r 91 -13 -4.09685 | gap 1, opp_overlap 224781 224782, overlap 224782 ATGTGCTTAAGATCT GAGAAGGGCTTCC-ACGAC GGC GTCGTTGGGGGCCTTTTTC TTTTGCGCGCTACGC TERM 157 224782 - 224809 + r 100 -10.6 -5.45802 | gap 1, opp_overlap 224781 224782, overlap 224776 TTAAGATCTGAGAAG GGCTTCC-ACGAC GGC GTCGTTGGGGGCC TTTTTCTTTTGCGCG repBf2 225826 - 224825 - | plasmid partitioning protein RepBf2 TERM 158 224921 - 224942 + g 78 -5.1 -4.77036 | opp_overlap 224925, overlap 224895 CTTGCCGTCGAAGAC GAAAGTAGC GCCG GCTGCTGTC TTTTTGATCATCACA repAf2 227022 - 225829 - | plasmid partitioning protein RepAf2 RHE_PF00215 228552 - 227527 - | sugar ABC transporter permease TERM 159 227811 - 227794 - G 100 -14.1 -4.27316 | GCCGCGAAGTGAAAA GCCGCCG AGCA CGGCGGC GGCGATCGCGTAGAG TERM 160 228353 - 228342 - G 73 -3.6 -4.731 | overlap 228351 228352 AATCGACGAATAAAA CGCC AAGA AGCG CTACGAGCGAGCCCA RHE_PF00216 230131 - 228590 - | sugar ABC transporter ATP-binding protein TERM 161 230166 - 230206 + r 75 -11 -3.51411 | opp_overlap 230167 230168, overlap 230162 230163 230167 GTGCTGCGGCATGAA ACGTCTTTCGCGGCGGGG AGTAC CCCCGCCGCGAACGAGAA TTACTTTCCAGCCAT TERM 162 230167 - 230205 + r 78 -14.5 -2.70525 | opp_overlap 230167 230168, overlap 230166 230162 230163 TGCTGCGGCATGAAA CGTCTTTCGCGGCGGGG AGTAC CCCCGCCGCGAACGAGA ATTACTTTCCAGCCA TERM 163 230204 - 230167 - R 100 -18.5 -3.72576 | gap 1, opp_overlap 230167 230166 230162 230163, overlap 230168 TGCTGCGGCATGAAA CGTCTTTCGCGGCGGGGA GTA CCCCCGCCGCGAACGA-G AATTACTTTCCAGCC TERM 164 230204 - 230168 - R 93 -18.7 -2.83403 | opp_overlap 230167 230166 230162 230163, overlap 230167 GCTGCGGCATGAAAC GTCTTTCGCGGCGGGGA GTA CCCCCGCCGCGAACGAG AATTACTTTCCAGCC RHE_PF00217 231169 - 230207 - | sugar ABC transporter substrate-binding protein RHE_PF00218 231496 - 232599 + | ribose operon transcriptional regulator RHE_PF00220 233445 - 233212 - | hypothetical protein RHE_PF00221 234265 - 233639 - | hypothetical protein TERM 165 234637 - 234647 + G 78 -4.6 -4.71828 | CCGCCCCCCAATCCT GCGT CTG GCGC TTTTCTTCCTCGCCT TERM 166 236175 - 236160 - g 75 -11.8 -3.54459 | opp_overlap 236155 236166 236172 GCAATTGTTTCGAAA GCGGCG GCGG CGCCGC GATGCGGTTTCGCTG RHE_PF00222 234602 - 238237 + | two-component sensor histidine kinase protein TERM 167 238501 - 238535 + G 71 -5.6 -4.36914 | gap 1, opp_overlap 238521, overlap 238505 CATGGCGACATCCCC TCCTCCGTG-CGCGC CATCAA GCGCGGCGCGGTCGA TTTTCTCACCAAGCC TERM 168 238824 - 238773 - g 95 -10 -4.39998 | gap 1 GATCCACAGAAGAAA CGTGATGCAGAAGATGGCGGCG-GC ATC GCTCGCCGACCTCGTGCGCATCGCG GAGAAACTGGAAATA nwsB 238234 - 238875 + | two-component response regulator protein (nodW mutant supressor protein) TERM 169 239100 - 239112 + G 71 -6.2 -4.30576 | GTCAGGAAATCACGT CCGG AGCTG CCGG TTTTCCTGATCACGG RHE_PF00224 238878 - 239255 + | putative two-component response regulator protein RHE_PF00225 239257 - 239949 + | two-component response regulator protein TERM 170 240030 - 240020 - f 75 -2.4 -5.05782 | opp_overlap 240021, overlap 240022 240025 ATTCACGCCAAAAAA GACG ATG CGGC GCCGGCAATGGGTTT nolRf 240133 - 240486 + | ArsR family transcriptional regulator RHE_PF00227 240682 - 241347 + | nitroreductase protein RHE_PF00228 241431 - 242003 + | putative NADPH:quinone reductase protein TERM 171 242054 - 242091 + T 91 -15.7 -3.63627 | gap 1, overlap 242058 GCCTGCAAACTTCGC CCAGGAGCTGGCTGCC TCATTCC GGCGGCCAGCT-CTGG TTTAGCGTGTAACAC TERM 172 242058 - 242088 + T 83 -16.2 -2.93585 | overlap 242054 GCAAACTTCGCCCAG GAGCTGGCTGCC TCATTCC GGCGGCCAGCTC TGGTTTAGCGTGTAA RHE_PF00229 243299 - 242109 - | putative isomerase protein RHE_PF00230 244496 - 243309 - | putative isomerase protein RHE_PF00231 246244 - 244523 - | oligopeptide ABC transporter, ATP-binding protein RHE_PF00232 247373 - 246252 - | oligopeptide ABC transporter, permease protein RHE_PF00233 248384 - 247383 - | oligopeptide ABC transporter, permease protein TERM 173 248475 - 248453 - R 100 -19.2 -4.2528 | GGCGAACCGAAGAAA GCGCCGTACC GTC GGTACGGCGC TCGATCAAAATCAGC RHE_PF00234 250423 - 248486 - | oligopeptide ABC transporter, substrate-binding protein TERM 174 250269 - 250285 + g 70 -10.1 -3.57561 | overlap 250250 AGGCGCTCGGCCAGC GGCGGCA GTT TGCCGTC TTTGACCAGTTGCGC TERM 175 250658 - 250644 - H 75 -12.8 -2.90219 | CAGAAGCTGTATACA GGCCGC GTC GCGGCC GGTGATGGCGTGGCG RHE_PF00235 250775 - 251488 + | GntR family transcriptional regulator TERM 176 251548 - 251566 + G 71 -8.1 -3.85817 | gap 1, overlap 251533 251554 TGCCGCCGGACGTGT CGGGACGC TGCT GCG-CCCG TTTCTGCGGCAGCAT RHE_PF00236 251510 - 252340 + | hypothetical protein RHE_PF00237 252337 - 253224 + | calcium-binding protein, regucalcin dapAf2 253248 - 254198 + | dihydrodipicolinate synthase protein dppAf 254262 - 255848 + | dipeptide ABC transporter, substrate-binding protein TERM 177 256009 - 256067 + G 74 -12.3 -3.53563 | gap 1 GACCTTCTCGATGGG CCGCCT-GCTGCCTGCCGACCCGGTGCT CGCG ATCACCGGGGCGGAGGTCAGTAAGGAGG TTTACGACCGCGTCT dppBf 255854 - 256933 + | dipeptide ABC transporter, permease protein TERM 178 257571 - 257521 - g 73 -10.9 -3.54424 | opp_overlap 257524, overlap 257548 TCGCACGCGCCGAAA CGCTCAGCCTGCGCAAGGCGG ATTATATCG CCGCCGTGCGCCTGCAGGGCG CGACCTCGCTCGCAA dppCf 256938 - 257873 + | dipeptide ABC transporter, permease protein dppDf 257870 - 258727 + | dipeptide ABC transporter, ATP-binding protein dppFf 258724 - 259467 + | dipeptide ABC transporter, ATP-binding protein TERM 179 260565 - 260554 - g 77 -4.4 -4.86001 | AGCACCCCAGAAAAA CGAT GTCG ATCG GCGGGCGGCTACGGC RHE_PF00244 259611 - 260804 + | hypothetical protein TERM 180 260925 - 260942 + F 100 -14.1 -5.01732 | GTCGAAGCCGCGCTC GGCCGCG CATG CGCGGCC TTTTTTGCGAGGATT TERM 181 261217 - 261241 + G 73 -7.1 -4.3739 | overlap 261220 261227 GTTCATGCGTGTGGC CATGGCGAC CGGTGAC GTCGCCCTG TTTTATGCGGCCGTC RHE_PF00245 261023 - 261880 + | multidrug ABC transporter permease RHE_PF00246 263133 - 261883 - | hypothetical protein TERM 182 262199 - 262168 - G 76 -12.9 -3.42056 | overlap 262190 ATGGGCAACCGAGAA GCGCGCCGGGTCG GAGAAA CGACAGGGCGCGC CGTGGACGACTTCCG TERM 183 263582 - 263560 - gR 72 -4.1 -4.60041 | overlap 263562 ATCTATTCGGAAAAA TCCCTGCAG GTGCT CCGCAAGAA AAACTTCCCGAGGAA TERM 184 264707 - 264749 + Gr 81 -13.5 -3.37344 | TGGGCCTCGGCGCGC TCTTCCGCCTCCTCGTC-CGC CCC GCGTGACT-GGCGGCGGAAGA TTACTTCGCTGACGA RHE_PF00248 265686 - 264682 - | hypothetical protein RHE_PF00247 263224 - 264735 + | phospholipase D protein TERM 185 264790 - 264771 - Gf 71 -5.6 -4.30576 | gap 1, overlap 264772 CGCTGACGATGAAAA GCGCGGCGC CGA GCG-CGAGC GGGAGGAAGAAATAG TERM 186 265171 - 265158 - Gf 83 -9.5 -4.24948 | CCAGCAGACCGAAAA GGCGG GTGC CCGCC GGGTCGATGCGTAGC RHE_PF00249 265769 - 266497 + | putative metal-dependent hydrolase protein TERM 187 266788 - 266804 + G 74 -2.1 -4.87665 | overlap 266789 GTCTTGAGCATCCTG GCCGTGG GCG CGACGGG TTTTTATGCATCAAG TERM 188 267405 - 267390 - g 74 -5.4 -4.62069 | gap 1, opp_overlap 267395, overlap 267391 GCCGGATGCCAAAAA GGCGATC GAC GA-CGCC GTCGCTTCCCTGAAG mcpZf1 266707 - 269211 + | methyl-accepting chemotaxis protein RHE_PF00251 269198 - 269533 + | hypothetical protein RHE_PF00252 270132 - 269623 - | hypothetical protein RHE_PF00253 271357 - 270224 - | D-amino acid oxidase protein glnP/glnQ 272963 - 271422 - | glutamine ABC transporter, ATP-binding protein TERM 189 272454 - 272438 - G 71 -5.1 -4.49958 | ATCCGAGGAAATAAA CAAGGCT CGA ATCCTTG ACGTTGCCGATGAAC TERM 190 273003 - 273044 + r 100 -16.6 -4.1552 | gap 1, overlap 273004 273006 GGGTACGCCAACCGC CGAGACT-CGGCCGTCCGC GGTCG GCGGACGGCCGTAGGCTCA TTTCTTGGGGAGATA TERM 191 273004 - 273043 + r 100 -20.1 -3.08991 | gap 1, overlap 273003 273006 GGTACGCCAACCGCC GAGACT-CGGCCGTCCGC GGTCG GCGGACGGCCGTAGGCTC ATTTCTTGGGGAGAT TERM 192 273006 - 273041 + r 88 -16.9 -3.10244 | gap 1, overlap 273004 273003 TACGCCAACCGCCGA GACT-CGGCCGTCCGC GGTCG GCGGACGGCCGTAGGC TCATTTCTTGGGGAG glnH 273869 - 273042 - | glutamine ABC transporter, substrate binding protein TERM 193 273517 - 273475 - G 73 -11.2 -3.60792 | opp_overlap 273474 273486 273487 273515 AGCACGGACAGATAA CCGGCGAGATAGCCGTCG GAGAAAT CGACGGTCTTCTCGCGGG CTTCGGTGGTTCCGA TERM 194 273828 - 273807 - G 81 -11.6 -3.87815 | TCCCATCGCCAGAAA GCAAGCCG CGAGGC CGGCTTGC AGAGGCGCAATGACT RHE_PF00256 274051 - 275121 + | LacI family transcription regulator RHE_PF00257 276524 - 276117 - | hypothetical protein RHE_PF00258 277055 - 276540 - | hypothetical protein RHE_PF00259 277566 - 277261 - | hypothetical protein RHE_PF00260 277958 - 278473 + | hypothetical protein RHE_PF00261 278655 - 278446 - | hypothetical protein malQ 280760 - 278847 - | 4-alpha-glucanotransferase (amylomaltase) protein TERM 195 279390 - 279356 - G 76 -8.4 -4.11394 | opp_overlap 279356 279354 AGGTCAGGCCGAAAA CGGGATAGGCATCCGG CGG CTTGAAGCCTTTCCCG TCTTGTTCATAGGAG RHE_PF00263 282550 - 280757 - | 1,4-alpha-glucan branching protein TERM 196 281159 - 281189 + g 76 -14 -3.19653 | opp_overlap 281158 281157, overlap 281160 GTCAGAGTCGAAACC CGGCAGGCGCGA AAGCTCC TCGCGCCTGCCC TTCCTGACCTTCTCG TERM 197 281160 - 281188 + g 83 -17.5 -2.51471 | opp_overlap 281158 281157, overlap 281159 TCAGAGTCGAAACCC GGCAGGCGCGA AAGCTCC TCGCGCCTGCC CTTCCTGACCTTCTC RHE_PF00264 284672 - 282999 - | two-component sensor histidine kinase/response regulator hybrid protein RHE_PF00265 290982 - 284683 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 198 286748 - 286772 + g 81 -12.1 -3.89131 | TCGGTGGCCTTTTCC TCGAGCGCGCG CCG CGCCTGCTCGA TTTCCTGATTCTTCG TERM 199 288553 - 288571 + g 71 -9.6 -3.73068 | overlap 288546 AGCGTTCAGCTGGTC CACCATCG TGT TGATGGTG TTCTTCAGTTCGAGG RHE_PF00266 291151 - 291603 + | hypothetical protein RHE_PF00267 291632 - 291913 + | hypothetical protein TERM 200 291978 - 291997 + G 74 -9.2 -3.8917 | GCTTCGCGTCCGCCG CGGCGGCT CAGG ACCCGCCG TTCTTCTGCTTCACG RHE_PF00268 291916 - 292779 + | putative hydrolase protein RHE_PF00269 292879 - 293949 + | iron ABC transporter, substrate-binding protein TERM 201 294907 - 294939 + G 72 -11.9 -3.31443 | opp_overlap 294902 TTCCCAACCAGATCC TGCCGATCGGCGTGG TCA CGGCGCTGGTCGGCG TTCCCTTCTTCTCGA RHE_PF00270 293976 - 294986 + | iron ABC transporter, permease protein TERM 202 295405 - 295375 - g 70 -7.4 -4.09685 | CGGCATGGCGGAAAA GCGCGACGAGCGCT GGC AGAGCCTGTCGGGC GGCGAAAAGCAACGC RHE_PF00271 294983 - 295744 + | iron ABC transporter, ATP-binding protein RHE_PF00272 296230 - 295763 - | AsnC family transcriptional regulator TERM 203 296061 - 296041 - G 78 -15.5 -2.72344 | GCGTATGGGCAACGA CGGTGAAGC CCA GCTTCACCG GATTGAGGATGGCGA TERM 204 296174 - 296206 + g 74 -9.1 -3.83998 | GAGTTCGCCCTGCGT CAGCTCGCTGTTC CGCTGGA GAGCGGCGAGCAG TTTGATATCAAATGG TERM 205 296708 - 296676 - g 75 -12 -3.64703 | overlap 296649 TCGCCGGCATTCAAA CGCCG-GGCGGCAGCG GCG CGCT-CCGTCTCGGCG CGGAACTCATCCAAA RHE_PF00273 296366 - 297562 + | aromatic amino acid aminotransferase TERM 206 298175 - 298190 + G 72 -11.8 -3.25823 | opp_overlap 298174 AAACCCCAATCAGAT CGCCGC AGCA GCGGCG TTAATATCAGGCGCC TERM 207 298613 - 298627 + G 72 -4.2 -4.58395 | overlap 298614 TGCCGAGCTCAATGA TGAGGC AAA GTCTCG TTTTTCGGCGGTGCA ilvB 297588 - 299213 + | hypothetical protein glgBf 301433 - 299235 - | glycogen branching enzyme TERM 208 301020 - 300974 - G 71 -9.4 -3.80625 | gap 2, opp_overlap 300988 CGCCGACAACCGAAA CGCGGCGGGCATTCG--GCGCC CAGAC GGCGAAGCGAACGCCCGCGACG TCGTCGATCGCCATT RHE_PF00276 304711 - 301430 - | trehalose synthase protein TERM 209 303170 - 303134 - G 77 -12.9 -3.54424 | TCCGATGGGCGGAAA GGGCGACATGCCGGTCA GTT CGATCGGCACGCGGCCC TCGAAGCTCGACAGG RHE_PF00277 307939 - 304712 - | putative alpha amylase protein TERM 210 305032 - 305055 + g 77 -12.5 -3.5627 | GCGCGGTGTTTTCGT TCCGGATGC GGTTCA GCATCCGGA TTTCAGCGATGATGT TERM 211 306201 - 306218 + g 72 -7.7 -4.10657 | gap 1, overlap 306200 AGCAGGATTGCCGTG CGC-TCGG CAT CCGACGCG TTTTCAAGACTGTCG TERM 212 307443 - 307429 - G 89 -12.8 -4.14739 | TCAGCGATTTGAAAA GCGCCG GCG CGGCGC GATCGATCCCGAGCA RHE_PF00278 308200 - 308562 + | hypothetical protein TERM 213 308988 - 308978 - g 71 -8.2 -3.88766 | AGGCGAGACAGGAAA CGCG GTT CGCG AATGTCGAGCTCGTC TERM 214 309399 - 309438 + G 82 -14.2 -3.29144 | opp_overlap 309396 CCGGCTTGAAGACGT CGTCGCCATTCCCGAAGG GATG CCTTCGGACACGGCGGCG TTCTACCGGAACTGC RHE_PF00279 308632 - 309513 + | beta-lactamase-like domain-containing protein RHE_PF00280 309524 - 310297 + | hypothetical protein corAf 311257 - 310298 - | magnesium/cobalt transporter protein TERM 215 311553 - 311584 + r 95 -15.2 -3.80573 | opp_overlap 311557, overlap 311557 TTTCCAAACGGAACA TAAAGGCGCCTAGC GATG GCCAGGCGCCTTTG TTTCGTCATGATGCG TERM 216 311557 - 311580 + r 95 -13.8 -4.51743 | opp_overlap 311557, overlap 311553 CAAACGGAACATAAA GGCGCCTAGC GATG GCCAGGCGCC TTTGTTTCGTCATGA TERM 217 311580 - 311557 - R 100 -16 -4.25401 | opp_overlap 311557 311553 CAAACGGAACATAAA GGCGCCTAGC GATG GCCAGGCGCC TTTGTTTCGTCATGA RHE_PF00282 312876 - 311590 - | nucleotide permease protein RHE_PF00283 314388 - 313168 - | hypothetical protein TERM 218 314406 - 314434 + r 70 -11.8 -2.66695 | overlap 314405 314403 CCTTCCCGCTCGGGT GTGGGATGGC ATCGCCCGC GCCATCCCAC CTATTTCGTCGCGGC RHE_PF00284 317575 - 314504 - | efflux transporter protein TERM 219 317301 - 317322 + g 71 -5.7 -4.371 | opp_overlap 317296 317294, overlap 317305 TCGACGAAGACGGTC GTCTGGCCG GCAA CGGTCTGGC TTTTGGTGTAGTCAA RHE_PF00285 318657 - 317572 - | HlyD family protein secretion protein RHE_PF00286 319727 - 318654 - | HlyD family protein secretion protein TERM 220 319226 - 319252 + g 79 -13.8 -3.53091 | CATCCGCCTTCAGCT CCGTGTAGGATA AGG TATCCTGCGCGG TTTCAAAAAGCGCCT TERM 221 319292 - 319262 - G 86 -8.8 -4.56597 | overlap 319264 GCGCGGTTTCAAAAA GCGCCTGCGCCGAC TTC GTCGATGCCTGCGC GGTCAGAAGCGCCTC RHE_PF00287 319840 - 320472 + | TetR family transcriptional regulator TERM 222 320761 - 320749 - g 76 -9.1 -4.06419 | opp_overlap 320740 CCGCCGGAGAAAGAA GGCGA CGA TCGCC GCCTTGCACGTTCTG RHE_PF00288 320585 - 321622 + | LacI family transcription regulator RHE_PF00289 322883 - 321663 - | AraC family transcriptional regulator TERM 223 322326 - 322283 - Gf 75 -2.9 -4.85599 | gap 1, overlap 322284 TCCAGTCCAGAAAAA GGGCGTCCGAGCGGTGC-GG TCCTC CCTGGACCACACGATCGCCG ACTTCGTGATTGTTG TERM 224 323098 - 323087 - gR 72 -7.2 -4.19238 | TTCCCAATCGGAAAA CCGG CGCC CCGG TCCACCAAGCCCGGA RHE_PF00290 322860 - 324011 + | ROK family transcriptional regulator TERM 225 324099 - 324052 - TR 78 -12 -3.53012 | overlap 324054 324057 CCGCTTCCCTCTAAA GAGGACTGAAGCGCACCGCA GGACCAGG TGCGGTGCGCTTCAGCTGGC GCGAGATGGGAAGGC TERM 226 324096 - 324054 - TR 83 -14.3 -3.34398 | gap 1, overlap 324052 324057 GCTTCCCTCTAAAGA GGACTGAAGCGCACCGCA GGACCAGG TGCGGTGCGCTTCAG-CT GGCGCGAGATGGGAA TERM 227 324094 - 324057 - TR 100 -21.5 -2.84325 | overlap 324054 324052 TCCCTCTAAAGAGGA CTGAAGCGCACCGCA GGACCAGG TGCGGTGCGCTTCAG CTGGCGCGAGATGGG RHE_PF00291 325223 - 324177 - | sugar ABC transporter, permease protein RHE_PF00292 326220 - 325225 - | sugar ABC transporter, permease protein RHE_PF00293 327328 - 326222 - | sugar ABC transporter, ATP-binding protein TERM 228 327221 - 327276 + g 78 -10.4 -4.07687 | gap 1, opp_overlap 327230 GCCGCAGCCCGACGG TCCGACAAAGACGACGAACTCGCCGTC CTT GATGTCGAGTTCGACGTCAT-GCAGGA TTTTGACGGCGCCAT TERM 229 327268 - 327230 - G 95 -16 -3.86346 | opp_overlap 327221 CGACGGTCCGACAAA GACGACGAACTCGCCGTC CTT GATGTCGAGTTCGACGTC ATGCAGGATTTTGAC RHE_PF00294 328680 - 327316 - | polygalacturonase protein TERM 230 328379 - 328431 + g 74 -5 -4.58395 | gap 4, overlap 328380 TCGATGCGACCCTCC CCCG-TC-AGGC-TGATGCGCCGCGC ATCCC GCGCGACG-ATCATGCCTCGATCGGA TTTTTCGGCGATCAC RHE_PF00295 329771 - 328677 - | hypothetical protein RHE_PF00296 332278 - 329789 - | hypothetical protein TERM 231 332127 - 332111 - G 73 -6.5 -4.2558 | overlap 332112 CATTGTCGACCAAAA GGCCTTG CGG CAAGGCA GGTCGCCGACGTCGA RHE_PF00297 332503 - 333786 + | sugar ABC transporter, substrate-binding protein TERM 232 333818 - 333857 + F 82 -13.6 -3.53012 | gap 1, opp_overlap 333810 333811, overlap 333819 333822 CGCAGAATGTGCGCA CGCATCAGCCACGGCCTCG CAA CG-GGTCGTGGCTGATCCA TTTCGGCAAGGAGGC TERM 233 333819 - 333856 + F 86 -17.1 -2.71712 | gap 1, opp_overlap 333810 333811, overlap 333818 333822 GCAGAATGTGCGCAC GCATCAGCCACGGCCTCG CAA CG-GGTCGTGGCTGATCC ATTTCGGCAAGGAGG TERM 234 333822 - 333853 + F 86 -17.4 -2.64155 | gap 1, opp_overlap 333810 333811, overlap 333819 333818 GAATGTGCGCACGCA TCAGCCACGGCCTCG CAA CG-GGTCGTGGCTGA TCCATTTCGGCAAGG TERM 235 334453 - 334439 - g 80 -5.6 -4.72272 | GTGCGCGATGAAAAA GACGGG CGT CCCCTC GAAAAACCGAAGCTC RHE_PF00298 334064 - 335326 + | hypothetical protein TERM 236 335329 - 335356 + T 84 -13.4 -3.69256 | gap 1, overlap 335308 335330 CGGAGGCCATTGACG CGACCGCCGCCCT TTG AAGGCGGCGG-CG TTCTCTTGGCTGCGT mcpB 337526 - 335382 - | methyl-accepting chemotaxis protein mocBf 338472 - 337543 - | rhizopine ABC transporter, substrate-binding protein RHE_PF00301 339527 - 338643 - | sugar ABC transporter, permease protein RHE_PF00302 340443 - 339517 - | sugar ABC transporter, permease protein RHE_PF00303 341704 - 340481 - | putative sugar ABC transporter, substrate-binding protein RHE_PF00304 343052 - 341754 - | alpha-L-fucosidase protein TERM 237 343073 - 343097 + H 75 -12.9 -3.08464 | TCTCCTCCCTGTTTC CCGGCTCGATA TCA TATCGAACCGG TTCGGTGGCTGATCA TERM 238 343420 - 343448 + G 81 -12.3 -3.83026 | CCGGTGGCCCAGACG CTGGCGCGCGGGC GCA GCTCGCTCGTCGG TTTCGTGTCCGCCAA RHE_PF00305 343261 - 344268 + | LacI family transcriptional regulator RHE_PF00306 344621 - 345355 + | GntR family transcriptional regulator TERM 239 345740 - 345729 - g 75 -4.4 -4.72272 | GGCGGCTATGAAAAA CAGA TCTA TCTG CCCGCCAAGCTTGCC RHE_PF00307 345603 - 346616 + | amino acid ABC transporter substrate-binding protein TERM 240 346664 - 346617 - f 71 -11.2 -3.17486 | gap 1, opp_overlap 346622, overlap 346621 AAGAACGTCCAGTAA GTC-AGCCGCGCCGCTCCCGGCT TCC AACCGGGAGCGGCCCCGTTCGAT CATGGGCATTGCGTG TERM 241 346659 - 346621 - f 85 -16.6 -2.56715 | opp_overlap 346622, overlap 346617 ACGTCCAGTAAGTCA GCCGCGCCGCTCCCGGCT TCC AACCGGGAGCGGCCCCGT TCGATCATGGGCATT TERM 242 346622 - 346658 + F 90 -17.9 -3.09635 | opp_overlap 346621 346617 CGTCCAGTAAGTCAG CCGCGCCGCTCCCGGCT TCC AACCGGGAGCGGCCCCG TTCGATCATGGGCAT TERM 243 346927 - 346970 + G 76 -11 -3.75153 | gap 1, overlap 346929 346959 346961 CCGCCGGCGAAGTCC GCCTGATGGGCGGGCCGAT CACCGGT ATCGACCCGCGCGTC-GGC TTTGCGTTCCAGACC TERM 244 346961 - 346992 + G 76 -13.1 -3.40597 | gap 1, overlap 346929 346927 346959 CACCGGTATCGACCC GCGCGTCGGCTTTG CGTTC CAGA-CCGACGCGC TCTTTCCCTGGAAGA TERM 245 347145 - 347177 + G 76 -13.4 -3.14211 | CATCAGCTCTCCGGC GGTATGCGCAAGCG CGTCT CGCTGGCGCAGACC TTCATCAACGAACCT RHE_PF00308 346815 - 347528 + | amino acid ABC transporter ATP-binding protein RHE_PF00309 347540 - 348421 + | amino acid ABC transporter permease TERM 246 348450 - 348479 + T 100 -16.5 -3.72695 | gap 1, opp_overlap 348454, overlap 348454 CAAGGCAGATCGAAG CG-AAGGCCGGGCG CCA TGCCCGGCCTTTCG TTTGATGGCAAAAAT TERM 247 348474 - 348454 - T 83 -15.4 -3.20164 | opp_overlap 348450 348454 GCAGATCGAAGCGAA GGCCGGGC GCCAT GCCCGGCC TTTCGTTTGATGGCA TERM 248 348454 - 348474 + T 100 -16.1 -4.10552 | opp_overlap 348454, overlap 348450 GCAGATCGAAGCGAA GGCCGGGCG CCA TGCCCGGCC TTTCGTTTGATGGCA RHE_PF00310 350011 - 348647 - | two-component sensor histidine kinase protein RHE_PF00311 350705 - 350037 - | two-component response regulator protein TERM 249 351188 - 351162 - g 74 -5.1 -4.59773 | gap 1 CGTGACCTTCAAAAA GAGCCGTCACAG CGCG CT-CGTCGGCTC CGGTCTCGACGTCTG RHE_PF00312 350911 - 351477 + | isochorismatase protein TERM 250 351763 - 351749 - g 76 -11.4 -3.8211 | GCCGATGGAGAACAA CCGTCC TTG GGACGG GCAGGAGCGCGCCGC RHE_PF00313 351474 - 352484 + | AraC family transcriptional regulator RHE_PF00314 353327 - 352479 - | hypothetical protein RHE_PF00315 355155 - 353362 - | hypothetical protein TERM 251 355765 - 355804 + G 100 -19.4 -3.74345 | opp_overlap 355765 355768 355770, overlap 355768 CGTCCTTCTCAACCA GAAGATCGCCGGGCGGAA TTTC TTCCGCACGGCGATGTTC TTTCCCTATGTCGCT TERM 252 355804 - 355765 - g 87 -19.4 -2.70932 | opp_overlap 355765 355768, overlap 355768 355770 CGTCCTTCTCAACCA GAAGATCGCCGGGCGGAA TTTC TTCCGCACGGCGATGTTC TTTCCCTATGTCGCT TERM 253 355801 - 355768 - g 85 -15.3 -3.50853 | opp_overlap 355765 355768, overlap 355765 355770 CCTTCTCAACCAGAA GATCGCCGGGCGGAA TTTC TTCCGCACGGCGATG TTCTTTCCCTATGTC TERM 254 355768 - 355801 + G 95 -15.3 -3.99985 | opp_overlap 355768 355765 355770, overlap 355765 CCTTCTCAACCAGAA GATCGCCGGGCGGAA TTTC TTCCGCACGGCGATG TTCTTTCCCTATGTC TERM 255 355799 - 355770 - g 93 -17.9 -3.32946 | opp_overlap 355768 355765, overlap 355768 355765 TTCTCAACCAGAAGA TCGCCGGGCGGAA TTTC TTCCGCACGGCGA TGTTCTTTCCCTATG RHE_PF00316 355280 - 356359 + | sugar ABC transporter, permease protein RHE_PF00317 356356 - 357192 + | sugar ABC transporter, permease protein TERM 256 358299 - 358311 + G 70 -7.7 -3.97307 | GCGTCGATGAATGCG TCTCC TGG GGAGA TTATTATTACATGGA RHE_PF00318 357197 - 358369 + | putative glucoronyl hydrolase protein RHE_PF00319 358385 - 359494 + | putative sugar ABC transporter, ATP-binding protein TERM 257 359899 - 359921 + G 74 -10.5 -3.73775 | overlap 359894 CTCGCCGCACCGCTC GCGATCGCG CTCGT CGCGACCGC TTTCCTCGCGGTCAC RHE_PF00320 359515 - 360228 + | hypothetical protein RHE_PF00321 360257 - 361531 + | putative sugar ABC transporter, substrate-binding protein TERM 258 361545 - 361583 + F 100 -14.6 -4.08767 | opp_overlap 361545, overlap 361547 361547 AAGTCTCGCGAGATA CCGG-CGGCCGCGGACCA GCACA TGG-CCGCGGCCGACCTG TTTTAGAAAAATCAG TERM 259 361583 - 361545 - f 79 -14.6 -2.87463 | opp_overlap 361545 361547 361547 AAGTCTCGCGAGATA CCGG-CGGCCGCGGACCA GCACA TGG-CCGCGGCCGACCTG TTTTAGAAAAATCAG TERM 260 361547 - 361581 + F 91 -15.8 -3.6422 | opp_overlap 361545, overlap 361545 361547 GTCTCGCGAGATACC GG-CGGCCGCGGACCA GCACA TGG-CCGCGGCCGACC TGTTTTAGAAAAATC TERM 261 361547 - 361580 + F 82 -16 -2.78211 | gap 1, opp_overlap 361545, overlap 361547 361545 GTCTCGCGAGATACC GGCGGCCGCGGACCA GCACA TGG-CCGCGGCCGAC CTGTTTTAGAAAAAT RHE_PF00322 361607 - 363457 + | hypothetical protein RHE_PF00323 364397 - 363648 - | putative phosphoglycerate mutase protein RHE_PF00324 366963 - 364570 - | two-component sensor histidine kinase/response regulator hybrid protein TERM 262 364992 - 364982 - G 82 -3.2 -5.14965 | opp_overlap 364986 AGGTCGAGTAAAAAA CGAT GCG ACCG GCGGATGCTTTCCTG TERM 263 365137 - 365151 + g 72 -4.2 -4.56597 | overlap 365130 GCGCGAAACCGAGCT GCGGAT CTG ATCGGC TTTTTCGCAAAGAAA TERM 264 366132 - 366089 - G 100 -17.4 -3.58343 | gap 1, opp_overlap 366107 366108, overlap 366068 GGGACGACTTCGAAA GCCG-CCAGAAGACGCGCGTG CGC CGCGCGCGCCTCCTGCTCGGC GCGTTCTGCCTGGAC RHE_PF00325 367555 - 367136 - | hypothetical protein RHE_PF00326 367887 - 367561 - | hypothetical protein RHE_PF00327 368467 - 368111 - | hypothetical protein RHE_PF00328 368865 - 368575 - | hypothetical protein groESf 369218 - 369532 + | 10 kDa chaperonin, heat shock protein TERM 265 371278 - 371305 + G 70 -7.6 -4.07885 | opp_overlap 371257 371269 GAAGGATGCTCCTCC GGCAATGCCGGC CGGC GCCGGTATGGAC TTTTAAGACAGGGTC groEL 369683 - 371311 + | chaperonin GroEL TERM 266 371323 - 371351 + T 75 -11.6 -3.53444 | opp_overlap 371316 371314, overlap 371324 TTAAGACAGGGTCGC AGGCTCGCCTGG AGACC CCGGGCGGGCCG TTTCCGAGGGAATGA TERM 267 371324 - 371350 + T 80 -15.1 -2.71924 | opp_overlap 371316 371314, overlap 371323 TAAGACAGGGTCGCA GGCTCGCCTGG AGACC CCGGGCGGGCC GTTTCCGAGGGAATG RHE_PF00331 372799 - 371765 - | hypothetical protein RHE_PF00332 373856 - 372951 - | LysR family transcriptional regulator TERM 268 373537 - 373564 + g 74 -9.8 -3.68351 | gap 1, overlap 373539 TTGAATTGCGTCAGC GC-CGCCGGCAGG CGG CTTGCCGCCGTGC TTTCCATCGTGCCGA TERM 269 373960 - 373949 - H 83 -7.2 -4.71061 | AGGCACAGGCAAAAA CCCG GACT CGGG GCAGTGCGTGAAGGC TERM 270 374206 - 374232 + G 73 -2.9 -4.78237 | gap 1 CTGCCTTCTTCTGAG CGTCGC-TTCAG GCCT CAGCATGCGACG TTTTCTTCTGCCGTA RHE_PF00333 374171 - 374482 + | hypothetical protein RHE_PF00334 375750 - 374848 - | putative acetyltransferase protein argE 376008 - 377132 + | acetylornithine deacetylase RHE_PF00336 377157 - 378080 + | putative D-2-hydroxyacid dehydrogenase protein RHE_PF00337 378566 - 378090 - | hypothetical protein TERM 271 378476 - 378533 + g 91 -20.7 -2.66272 | gap 3, opp_overlap 378474, overlap 378480 378492 GACCGTGACATGAGC TGGCGGGCGT-CGGGCTTCCGCG-CGCG GGCAG CGCGGCGCC-AGGCCCGGACGCCCGCCG TAGATTTGACTGGCG TERM 272 379480 - 379505 + G 76 -7.6 -4.36914 | overlap 379484 TGCCGATCTCGATCT TGC-GGCAGGCG CCAT CGCC-GCCAGCA TTTTGTCCAACGCCG RHE_PF00338 378653 - 380116 + | aldehyde dehydrogenase RHE_PF00339 380126 - 381169 + | 3-isopropylmalate dehydrogenase gabDf1 381223 - 382680 + | succinate semialdehyde dehydrogenase protein TERM 273 382728 - 382690 - T 79 -9.5 -4.11216 | opp_overlap 382696, overlap 382696 TCCTGACCGGCAAAA GGCAAAGGGCGCCGGAA GATCA TTCCGGTGCCCTTCGTA AACGACGTCGCAAGC TERM 274 382696 - 382722 + T 85 -15.9 -3.14344 | opp_overlap 382690 382696 CCGGCAAAAGGCAAA GGGCGCCGGAA GATCA TTCCGGTGCCC TTCGTAAACGACGTC TERM 275 382722 - 382696 - T 93 -13.7 -3.92659 | opp_overlap 382696, overlap 382690 CCGGCAAAAGGCAAA GGGCGCCGGAA GATCA TTCCGGTGCCC TTCGTAAACGACGTC RHE_PF00341 384104 - 382830 - | FAD-dependent oxidoreductase protein RHE_PF00342 384786 - 384118 - | dehalogenase protein RHE_PF00343 385624 - 384956 - | putative aldolase RHE_PF00344 386510 - 385641 - | LacI family transcription regulator TERM 276 386045 - 386025 - G 72 -7.5 -4.12198 | overlap 386034 GAGAATTTCGCAAAA GCTGGCAAA GCG CTTGCCGGC GCGGATGTCGCGGCT TERM 277 386699 - 386709 + H 71 -6.8 -4.32046 | overlap 386695 386694 ACTGCTAGGCGCGCT GTCG CAG CGAC TTTCATTTTTCACCA RHE_PF00345 386846 - 387790 + | putative 3-hydroxyisobutyrate dehydrogenase protein RHE_PF00346 387802 - 388578 + | putative hydroxypyruvate isomerase protein TERM 278 388678 - 388656 - g 78 -5.4 -4.72986 | overlap 388658 CACGCTGACGAAAAA CGGCCTGCGC ACG GTGCAGACGG TCGGCATTCCGAATC TERM 279 388817 - 388786 - g 76 -10.8 -3.72576 | gap 1, opp_overlap 388791 388795 GCCGCTGCGACCAAA GCCGAGCGCTGGCTG CGC CAGC-AGGGCGCGGC GCATGTGCTTTACAA TERM 280 389251 - 389234 - g 76 -12.7 -3.53563 | AGATCGCGCTGGAAA CGCCGGT ATCC ACCGGCG CGTCCGGTCTCGGCC TERM 281 389338 - 389349 + G 70 -7.2 -4.10429 | overlap 389334 GAAGACGTCATTCGC CCCG TAGG CGGG TTTTCGGCGATCATT TERM 282 389453 - 389506 + G 71 -8.3 -3.85698 | opp_overlap 389474 ATCCCGAGCGGCTGC TG-GC-CGCCGGCCCGGATGAGATCGC CGCG GCGATTTC--CTGGGCCGGAGAGCGCA TTTCTGCCGGCCCGG RHE_PF00347 388582 - 389862 + | hypothetical protein RHE_PF00348 390041 - 390877 + | putative acetyltransferase protein TERM 283 392066 - 392049 - g 86 -12.7 -3.9978 | opp_overlap 392065, overlap 392042 CGACAAAAGCAACAA GACGCCG CTGC CGGCGTC CGCCGAACCCGCCCG RHE_PF00349 390889 - 392265 + | hypothetical protein RHE_PF00350 392308 - 393195 + | putative 2-haloalkanoic acid dehalogenase protein TERM 284 393399 - 393433 + G 71 -11.2 -3.53012 | CGGCGGGCTCGTGCT CGGCCGCGCCGGCAAG GCG CTCGCCGCCACGCCCG TTTCCGGCGGGGCGC RHE_PF00351 393259 - 394869 + | oligopeptide ABC transporter, substrate-binding protein RHE_PF00352 394959 - 395909 + | oligopeptide ABC transporter, permease protein TERM 285 395946 - 395927 - g 74 -10.6 -3.70773 | opp_overlap 395941, overlap 395924 TCCCATATCGAACAA CGGCCCGC CGTG GCGCGCCG GCTCAGCTACCGCTT RHE_PF00353 395906 - 396760 + | oligopeptide ABC transporter, permease protein TERM 286 396752 - 396741 - f 72 -5.8 -4.37092 | ATCTGCCGCACAAAA TCCG AGAT CGGA GCGAGTGATGACCAA TERM 287 397558 - 397546 - g 70 -10.5 -3.59979 | GCCTTCGAGCCGAAA CCGCG CGA CGCGG CAGGCCTTGCCGAGA TERM 288 397916 - 397927 + G 85 -5.8 -5.00616 | opp_overlap 397898 397897 TCGAGGACATCCTCG CCAG GCCG CTGG TTTTTTACCACCGCA RHE_PF00354 396760 - 398415 + | oligopeptide ABC transporter, ATP-binding protein RHE_PF00355 399270 - 398587 - | hypothetical protein TERM 289 400167 - 400134 - gH 71 -11 -3.05384 | overlap 400138 GCGGGGTCCATTCAA TCGACGATGGCAAG GGCGAG CCTGCCATCGCCGC GCCGACGATCGCTGA RHE_PF00356 399674 - 400996 + | putative D-amino acid oxidase protein TERM 290 401900 - 401858 - gf 77 -13.5 -2.89569 | gap 1, opp_overlap 401858 401857, overlap 401851 401893 401896 CGGCGAAAGCAAGGA GGCGGCGATCGATCATCAGC GCCC GC-GAGGACCAATCACCGCC GTTCTGGCGGAACGC ooxB 400914 - 402176 + | D-octopine oxidase, subunit B protein TERM 291 402607 - 402597 - g 72 -2.4 -4.72007 | overlap 402598 402599 GTCGACGAAAACAAA GCGC CCG GCGG ACAGATCTATCGGTC ooxA 402345 - 403955 + | D-octopine oxidase, subunit A protein RHE_PF00359 403969 - 405396 + | aldehyde dehydrogenase RHE_PF00360 406326 - 405850 - | AsnC family transcriptional regulator TERM 292 407647 - 407631 - g 77 -2.2 -5.00616 | overlap 407642 CCCGCCTTGAAAAAA GCCG AAATCAACG CGGC CTGGGCGGGCTACAT RHE_PF00361 406557 - 407882 + | deaminase protein TERM 293 407918 - 407884 - T 74 -10.7 -3.57144 | overlap 407909 TCGCCGATTTCTAAA GAGGCGCGTCCCG GGGGAAAGA CACGACGCGCCTC AGGAGGCCAAGGGCA mcpZf2 410457 - 407917 - | methyl-accepting chemotaxis protein TERM 294 409259 - 409288 + g 100 -15.8 -4.14627 | gap 1, overlap 409261 TCGAGCGTGTGACTT GC-GGCAGCGACC AGCTC GGTCGCTGCCTGC TTGTTTCTCTGCCAC TERM 295 409261 - 409285 + g 88 -17.2 -3.09322 | overlap 409259 GAGCGTGTGACTTGC GGCAGCGACC AGCTC GGTCGCTGCC TGCTTGTTTCTCTGC TERM 296 409888 - 409909 + g 82 -5.9 -4.83169 | opp_overlap 409888 GGTGGCCTTACGCAA TTTGGCG ATGCGTTC CGCCAAA TTTTTATAGGCCGCT TERM 297 410743 - 410720 - R 84 -5.3 -5.14563 | gap 2, opp_overlap 410720 410725 410734, overlap 410723 GGCGTGACCAAAAAA GGAGCAGCCGC ATAG GCGGC--CTCC ATTTTGCCGACGCTC RHE_PF00363 411678 - 410830 - | putative esterase/lipase/thiestherase protein gabDf2 413176 - 411689 - | succinate-semialdehyde dehydrogenase protein TERM 298 412821 - 412843 + g 71 -4.6 -4.4267 | overlap 412822 GCCGCATAGGCCACC TCGCCGCGCG CGT CGCGCAACGC TTTTCCGTTTTCGAG RHE_PF00365 414420 - 413191 - | putative alcohol dehydrogenase protein TERM 299 414324 - 414299 - G 89 -12.5 -4.18018 | overlap 414280 414318 GGCGTTGAGGCAAAA CGCGCGTCCGT GCAG ACGAGCGCGCG CCGGCCGGTCCTGCT RHE_PF00366 415451 - 414417 - | putative malate dehydrogenase protein TERM 300 414534 - 414502 - G 100 -17 -4.13767 | gap 1 TGGTCGATCTCAAAA CCGT-TGCGGCGGGC AGCC GCCCGCCGCTGACGG GCACGATCGCCGGGG RHE_PF00367 415548 - 416246 + | GntR family transcriptional regulator RHE_PF00368 416301 - 416894 + | hypothetical protein TERM 301 416950 - 416913 - T 90 -12 -4.25056 | opp_overlap 416919, overlap 416914 CACCGCACCAAGAAA CCGAAAGGCCGGGCAG TGACAT CTGCCGGGCCTTTCAT TGAGGGCTCTCGGAG TERM 302 416949 - 416914 - T 85 -15.5 -3.14552 | opp_overlap 416919, overlap 416913 ACCGCACCAAGAAAC CGAAAGGCCGGGCAG TGACAT CTGCCGGGCCTTTCA TTGAGGGCTCTCGGA TERM 303 416919 - 416944 + T 85 -11.8 -3.90588 | opp_overlap 416914 416913 ACCAAGAAACCGAAA GGCCGGGCAG TGACAT CTGCCGGGCC TTTCATTGAGGGCTC RHE_PF00369 418161 - 416971 - | proline M24 family dipeptidase RHE_PF00370 418645 - 418193 - | hypothetical protein RHE_PF00371 419312 - 418632 - | hypothetical protein TERM 304 418741 - 418731 - G 71 -4.6 -4.46212 | GCTTGCACCATAAAA GCCG TGG CAGC CAGCACAACGCTCGA TERM 305 419193 - 419214 + g 100 -13 -4.56597 | opp_overlap 419178 419179 GGGGTCAGTGCCATT GACGCCGG CGAGCA CCGGCGTC TTTTTCACGACCGGC TERM 306 419413 - 419381 - R 71 -12 -2.87344 | gap 1 CAGCCTTGGCAGAGA TGCCGGT-GCCGGCG CCGG CGCCGACGATCGGCA CGCCGGCTGCGATCA RHE_PF00372 420683 - 419487 - | hypothetical protein RHE_PF00373 420739 - 421419 + | TetR family transcriptional regulator RHE_PF00374 421774 - 423084 + | putative sugar ABC transporter, substrate-binding protein RHE_PF00375 423257 - 424147 + | sugar ABC transporter, permease protein RHE_PF00376 424149 - 425108 + | sugar ABC transporter, permease protein RHE_PF00377 425089 - 426414 + | sugar ABC transporter, ATP-binding protein RHE_PF00378 426414 - 427490 + | sugar ABC transporter, ATP-binding protein RHE_PF00379 428531 - 427557 - | putative phosphoglycerate dehydrogenase protein RHE_PF00380 429247 - 428555 - | GntR family transcriptional regulator RHE_PF00381 430419 - 429250 - | putative mandelate racemase protein TERM 307 430438 - 430470 + r 89 -17 -3.18134 | gap 1, overlap 430436 CCGGATCCCCCTCCT CACG-GCCCGCGGGC CGCT GCCCGCGGGCACATG TCTTCAGTTCGTTAC RHE_PF00382 431369 - 430482 - | putative epimerase protein TERM 308 432460 - 432483 + G 72 -3.7 -4.56597 | opp_overlap 432453, overlap 432462 CTCAAGGAGCTTGCC GCCGCGACA AGGGTC TGGCGCGAC TTTTTCGAGACACCG RHE_PF00383 431707 - 432558 + | putative epimerase protein TERM 309 432642 - 432672 + T 100 -4.6 -5.77853 | opp_overlap 432642, overlap 432626 TGCCAGGAAGAATAC CGGCGGTTATGC TGTTCAC GAAAGACCGCCG TTTTTTTTCAGACTT putA 436480 - 432773 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 310 433964 - 433932 - G 72 -12 -3.33525 | gap 1, overlap 433930 TGCAGGCAGAGAACA CG-CAGCGCCGAGCA GCGC TGGCCGGCGCTGTCG AAAGCCGATGTTACG putR 436880 - 437374 + | proline dehydrogenase protein RHE_PF00386 437443 - 439095 + | hypothetical protein RHE_PF00387 439983 - 439096 - | LysR family transcriptional regulator TERM 311 439785 - 439750 - G 70 -10.4 -3.59262 | gap 1, opp_overlap 439757 439767 439767 GGCGATATCGGCAAA GCTCTTCGCCAGCGTCG CGC CGAGGCTGACGCAG-GC CGCCGTTGGCTTGAT RHE_PF00388 440095 - 441348 + | putative dyoxygenase (alpha subunit) oxidoreductase protein TERM 312 442356 - 442342 - g 73 -11.4 -3.55487 | opp_overlap 442353 CGACATGAACCACAA TGGCGG CAT CCGCCA GCGGGAAATCGACGC RHE_PF00389 441338 - 442429 + | putative ferredoxin oxidoreductase protein RHE_PF00390 443556 - 442543 - | AraC family transcriptional regulator RHE_PF00391 444584 - 443586 - | proline racemase protein RHE_PF00392 445452 - 444601 - | glycine betaine/L-proline ABC transporter, permease protein RHE_PF00393 446297 - 445449 - | glycine betaine/L-proline ABC transporter, permease protein RHE_PF00394 447411 - 446320 - | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 313 447427 - 447441 + r 74 -7.8 -4.25064 | overlap 447425 AGCGATCCCCTTTGA GCCAGT GGC GCTGGC TTCTTTCTTAGATTT TERM 314 447455 - 447494 + r 81 -10.6 -4.14945 | GCTTCTTTCTTAGAT TTTAGGGTGGCCGCCCGA GAGT TCGGACGGCCACGCGACA TTTACTTCTTCTTGA RHE_PF00395 448347 - 447496 - | glycine betaine/L-proline ABC transporter, substrate-binding protein TERM 315 447945 - 447961 + g 91 -9.4 -4.42639 | TGCCGATGATCTTGC CGCCGA ACTTG TCGGCG TTTTCATTGAGCTGT RHE_PF00396 449772 - 448426 - | putative oxidoreductase protein dhaL 451286 - 449769 - | aldehyde dehydrogenase protein dapAf3 452190 - 451279 - | dihydrodipicolinate synthase protein RHE_PF00399 452903 - 452187 - | GntR family transcriptional regulator TERM 316 453241 - 453188 - R 75 -12.9 -3.09516 | opp_overlap 453239, overlap 453238 GCGTCTATCATCCAA TGCCCGGCTTGATGGGGGAGCGCCG CCGT CGGCGCTCCCCTGACAATTCAGGCG GCGAGCACACCGCTC RHE_PF00400 453807 - 453235 - | glutathione-dependent formaldehyde-activating enzyme TERM 317 453425 - 453409 - G 79 -11.5 -3.90082 | opp_overlap 453417, overlap 453404 453401 GACGAAAGCAGCAAA GCCGGGC TTG GCCCAGC CGCTTTCCTGGAAGC RHE_PF00401 454701 - 453865 - | S-formylglutathione hydrolase protein adhCf 455832 - 454705 - | formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein TERM 318 455241 - 455293 + g 76 -13.4 -3.14132 | gap 1, opp_overlap 455259 455262, overlap 455243 AGACGTTGAGGCCGA TGCCGCCGAGGCCGAAGAC-GATCG CCGT CGATCCGACCTCGACCTTGGCGGTG TTGATGACGGCGCCG TERM 319 455243 - 455291 + g 86 -16 -3.13403 | gap 1, opp_overlap 455259 455262, overlap 455241 ACGTTGAGGCCGATG CCGCCGAGGCCGAAGAC-GATCG CCGT CGATCCGACCTCGACCTTGGCGG TGTTGATGACGGCGC RHE_PF00403 456616 - 455924 - | hypothetical protein etfAf 457561 - 456632 - | electron-transport flavoprotein, alpha-subunit TERM 320 456897 - 456861 - G 72 -12.1 -3.28712 | opp_overlap 456876 TCGTTCGGGGCATAA CCGGCATCGACGGCCGC ACG GCTGGCGCCGACGGCGG CACCGAGCTTGTCGG etfBf 458336 - 457587 - | electron transport flavoprotein, beta subunit RHE_PF00406 459071 - 458466 - | putative transcriptional regulator protein stcD 461150 - 459114 - | 2,4-dienoyl-CoA reductase (NADPH) protein RHE_PF00408 461297 - 461926 + | TetR family transcriptional regulator RHE_PF00409 461937 - 462731 + | putative pyrroline-5-carboxylate reductase protein TERM 321 463347 - 463380 + G 78 -14.6 -3.05384 | opp_overlap 463334 AGGCGGGCTTCACCC TCGTCGACACCGGC TCTGCC GCCGGTCTCGACGG TTCGATCGCCAAGGC RHE_PF00410 462800 - 463801 + | amino acid ABC transporter substrate-binding protein TERM 322 463850 - 463809 - f 81 -10.9 -4.18018 | gap 1, opp_overlap 463811, overlap 463810 CTCTTTGAGCCAAAA TTG-CGGTGCGCCAAAAGCG CAC CGCTTCTCACGCGCCGACAA AATCAAAAGACTGCC TERM 323 463834 - 463810 - f 78 -13.5 -3.10597 | opp_overlap 463811, overlap 463809 TCTTTGAGCCAAAAT TGCGGTGCGCC AAA AGCGCACCGCT TCTCACGCGCCGACA TERM 324 463811 - 463833 + F 90 -16.3 -3.28712 | opp_overlap 463810 463809 CTTTGAGCCAAAATT GCGGTGCGC CAAAA GCGCACCGC TTCTCACGCGCCGAC RHE_PF00411 463894 - 464781 + | amino acid ABC transporter permease RHE_PF00412 464774 - 465853 + | amino acid ABC transporter ATP-binding protein TERM 325 466098 - 466041 - Tf 79 -12.7 -3.39844 | overlap 466039 466051 466052 CGCATACCGCAAACA CGGCCGAGAACGGCGTGCC-GCGTGAC CAGCAC GTCACGCCGGCGCGCCATCGACGGC-G CCGGGATGATCGTGG TERM 326 466089 - 466051 - Tf 83 -14.6 -3.31515 | gap 1, overlap 466039 466041 466052 AAACACGGCCGAGAA CGGCGTGCC-GCGTGAC CAGCAC GTCACGCCGGCGCGCCA TCGACGGCGCCGGGA TERM 327 466088 - 466052 - Tf 82 -15.9 -2.58427 | gap 1, overlap 466039 466051 466041 AACACGGCCGAGAAC GGCGTGCC-GCGTGAC CAGCAC GTCACGCCGGCGCGCC ATCGACGGCGCCGGG TERM 328 466485 - 466540 + TF 79 -12.1 -3.59979 | gap 3 GTATGCCAACTGCCT GTCAGCCTGCCGAAGGCTATCTCGAGCG GTC CACTTTAGA-A-CCTTCGGCAGGC-GAC TTTCGGATGGCGCAC RHE_PF00413 467021 - 466608 - | hypothetical protein RHE_PF00414 466997 - 467995 + | AraC family transcriptional regulator RHE_PF00415 468327 - 468052 - | hypothetical protein RHE_PF00416 470618 - 468324 - | formate dehydrogenase alpha chain protein TERM 329 469152 - 469181 + g 76 -5.5 -4.57569 | overlap 469163 GGGTTTGGTGGCGAT GTGCACCGTCAGC TTCA GCTGCCGAAGCGC TTTTTCGACCAGTGC TERM 330 469920 - 469890 - G 81 -15.4 -3.06796 | overlap 469892 GCGGATCGGATTGAA GACGACGATCCGCG CGC CGCGCATCGCCGCC CGGCGCAGGTCGCCG TERM 331 469918 - 469892 - G 78 -14.4 -3.09327 | overlap 469890 GGATCGGATTGAAGA CGACGATCCGCG CGC CGCGCATCGCCG CCCGGCGCAGGTCGC TERM 332 470362 - 470376 + g 91 -9.2 -4.54047 | opp_overlap 470361 470362 TTCGCCGCGAAGAAG GCGGGT GTC GCCCGC TTTTCTGTCGCCTCC RHE_PF00417 472614 - 470701 - | hypothetical protein TERM 333 472619 - 472642 + H 90 -15.4 -3.69434 | opp_overlap 472611 472619 TCCCAAACCATGTAA CCACTCTGTC ATAC GACAGAGTGG TTTGGGCTTCGTTAA TERM 334 472642 - 472619 - H 83 -15.4 -3.1634 | opp_overlap 472619, overlap 472611 TCCCAAACCATGTAA CCACTCTGTC ATAC GACAGAGTGG TTTGGGCTTCGTTAA RHE_PF00418 472858 - 473886 + | D-threo-aldose 1-dehydrogenase protein RHE_PF00419 474065 - 474412 + | hypothetical protein RHE_PF00420 474512 - 475033 + | hypothetical protein RHE_PF00421 475041 - 475361 + | putative amicyanin protein RHE_PF00422 475398 - 476108 + | RNA polymerase sigma factor TERM 335 476290 - 476264 - f 78 -13.7 -3.09516 | CCGTGCACGAGGCAA GCGGCGGGACC GGTGA AATCCCGCCGC CGAAGGCATTGAAGA RHE_PF00423 476579 - 478216 + | hypothetical protein RHE_PF00424 478270 - 478743 + | hypothetical protein TERM 336 479217 - 479236 + G 77 -4.2 -4.8543 | overlap 479218 GGGTACAATACACAT TGACGACA CCGG TGTCGGCG TTTTTCTCGAACTTC RHE_PF00425 478745 - 479329 + | hypothetical protein TERM 337 479718 - 479730 + G 70 -10.5 -3.61715 | opp_overlap 479694 479718 CCGGGATGGCGACAA GGCCG GAC CGGCC TTCTTCGGCAGGATG TERM 338 479937 - 479925 - g 74 -10.5 -3.78934 | TGCGGCCGAGAAGAA CGCGG GAT CCGCG CGCCACTATGAGGAG RHE_PF00426 479437 - 479985 + | hypothetical protein RHE_PF00427 480794 - 480069 - | hypothetical protein TERM 339 481238 - 481196 - g 70 -10 -3.66178 | gap 3, opp_overlap 481216 TGGCGGAAGCCGAAA GCTTGGCGATGCGCGCCTGCC GGGC GGCAGGCGC-CAGCG--AAGC CACCGCCCGTTCCCT RHE_PF00428 481156 - 481863 + | putative malate dehydrogenase protein TERM 340 482224 - 482271 + F 70 -2.7 -4.83169 | opp_overlap 482226 CCGGAGGCATGTCAA CAGCGTGTCGACAAAGTCA AGCGGAAAAA TTAAATTGCCGACACGCTG TTTTTCTGGCCCAAT RHE_PF00429 482337 - 482858 + | transcriptional regulator protein TERM 341 483433 - 483416 - g 86 -6.9 -5.00616 | overlap 483417 TCTGGCTGGAAAAAA GCGGCCT GGAA AGGCCGA AAGCAAATGCCTACA TERM 342 483432 - 483417 - g 70 -10.4 -3.60048 | overlap 483416 CTGGCTGGAAAAAAG CGGCCT GGAA AGGCCG AAAGCAAATGCCTAC RHE_PF00430 482866 - 483648 + | pyrroline-5-carboxylate reductase RHE_PF00431 483654 - 484100 + | hypothetical protein TERM 343 484233 - 484196 - f 71 -4.7 -4.52589 | gap 1, opp_overlap 484200, overlap 484198 484199 TTTTGCTAGAGAAAA TATCCTCGCCCGCCCACC GGC GGCGGGCTGGCC-GAATG TCTCCGGCCAGCCGG TERM 344 485315 - 485294 - g 75 -4.3 -4.77036 | gap 1, overlap 485295 CTCGATCACCAAAAA GGCGCTCGAC TAT GCCG-GCGCG AAGCAGGGCGTCACG RHE_PF00432 484386 - 485573 + | hypothetical protein TERM 345 485597 - 485585 - T 72 -10.5 -3.39529 | opp_overlap 485584, overlap 485559 485586 CTAAGTCAAGATCAA CCGCC GAA GGCGG ATCCTTACCGATCCG RHE_PF00433 486271 - 485660 - | MerR family transcriptional regulator RHE_PF00434 486351 - 487685 + | beta alanine--pyruvate transaminase RHE_PF00435 488760 - 487756 - | AraC family transcriptional regulator TERM 346 487847 - 487817 - G 78 -9.8 -4.07885 | gap 1 TATTCGGCGGCAAAA CGCCCGAGATGGG TAAATC CCCATCT-GAGCG CGACATCGGCGACAG TERM 347 488297 - 488285 - G 78 -6.9 -4.6635 | AAATGGGGAAGAAAA CCGGC ATC ACCGG TGATCGTTCGCTCGA dadA 490112 - 488844 - | D-amino acid dehydrogenase small subunit TERM 348 489169 - 489196 + g 74 -5.5 -4.51799 | overlap 489170 ATGCCGCCGACGCGG ATGCGGTCGCC GAGCCG GGTGATCGCAA TTTTGTAGGTTTCGT dadX 491276 - 490143 - | alanine racemase protein TERM 349 490380 - 490364 - G 74 -9.3 -3.85698 | TGCCCTTGTGATAAA CGGCGCC GCG GTCGCCG AGACTGCGCGGCAGG dadR 491401 - 491865 + | alanine catabolic operon transcription regulator raiR 492608 - 491883 - | LuxR family transcriptional regulator raiI 493408 - 492770 - | autoinducer synthesis protein TERM 350 492926 - 492895 - G 75 -13.8 -3.10513 | gap 1 ATAGGCCAACATACA GCTTG-CCGATCTCG GGC CGGGATCGGGCAAGC GGCATCGGCCTCCAG RHE_PF00441 493583 - 493927 + | hypothetical protein RHE_PF00442 494177 - 495604 + | putative glucoamylase protein TERM 351 497443 - 497431 - g 71 -9.1 -3.78934 | CGTCGTGGACAAGAA CCAGC GCA GCTGG GACCACGAAAATCTC RHE_PF00443 495698 - 497569 + | putative dehydrogenase large subunit protein RHE_PF00444 497668 - 498786 + | hypothetical protein RHE_PF00445 498783 - 499340 + | hypothetical protein RHE_PF00446 499432 - 500244 + | myo-inositol catabolism protein TERM 352 500249 - 500259 + F 71 -8.2 -3.90922 | TTGGATGGTAGCCCG GCGC CGA GCGC TTGTTTCAGCCGGAT TERM 353 501390 - 501367 - g 76 -7.4 -4.27617 | gap 1, opp_overlap 501367 501369 GACATTGGAGGAAAA GATCG-CGTCC CAC GGCCGTCGATC TCATTCGTGATGGCG RHE_PF00447 500378 - 501400 + | hypothetical protein TERM 354 501929 - 501917 - g 83 -4.7 -5.02074 | overlap 501918 501919 TGATTCCCGAAAAAA CCGTC CGC GCCGG CCACGAGATCATCGA RHE_PF00448 501517 - 502341 + | putative metallo-beta-lactamase superfamily protein TERM 355 502607 - 502578 - g 71 -9.3 -3.71378 | gap 1, opp_overlap 502566 TATGCGAGACTGAAA GGAATTGGCG-CGC TGT GCGTCACCTATTCC GCAGGCTCGCTTTGT RHE_PF00449 502380 - 504035 + | putative pyruvate decarboxylase protein RHE_PF00450 505864 - 504098 - | putative kinase/esterase protein mcpCf 507972 - 506095 - | methyl accepting chemotaxis protein TERM 356 507641 - 507667 + g 71 -5.6 -4.30576 | overlap 507642 ATCTGATTGATCAGC TGGCGCCCGCGC TCG GTGCGAACGCCC TTTTCGTAATCGCCA TERM 357 507699 - 507731 + g 72 -2.6 -4.67635 | gap 1, opp_overlap 507707, overlap 507707 CAACCGTGTCGAGCC CCGATGAAGCGGCCG CGAT CGCCTGCTTTC-CGG TTTTGTCGTTTTCCA TERM 358 508609 - 508619 + H 88 -4.6 -5.47218 | CATTCCGAACGCAGA TGCC GGC GGCG TTTTTTTGCGTCCGA TERM 359 509465 - 509447 - g 72 -7.3 -4.11394 | AGGCCATCCTGAAAA GGCGCTC GGGAT GCGCGCC GACTGGATCGAAAAG nrtA 508662 - 509975 + | nitrate ABC transporter, substrate binding protein TERM 360 509982 - 510006 + F 75 -12.7 -3.18274 | opp_overlap 509963, overlap 509989 GTCTCCTGATCCCGC CTCCGGCGCGC GCG GCGCGCCGGCC TTCCATTCCCGTGAG nrtB 510032 - 510925 + | nitrate ABC transporter, permease protein nrtCf 510937 - 511734 + | nitrate ABC transporter, ATP-binding protein TERM 361 511790 - 511760 - f 100 -19.8 -3.48924 | overlap 511761 CGATTGCGGACATAA CCCGCTGCCCGATT GCC AATCGGGCAGCGGT ACGCATACTGGCCGC TERM 362 511789 - 511761 - f 100 -23.3 -2.6914 | overlap 511760 GATTGCGGACATAAC CCGCTGCCCGATT GCC AATCGGGCAGCGG TACGCATACTGGCCG TERM 363 512246 - 512274 + G 91 -16.8 -3.55444 | gap 1, opp_overlap 512238 CGATCAAGTGCCTGC GGGCGAACGGCCG CGTG CGGCCGTT-GCCC TTTGGACGCTGAAGG vbsP 511806 - 512525 + | phosphopantetheinyl transferase protein vbsO 513856 - 512498 - | L-lysine 6-monooxygenase (lysine N(6)-hydroxylase) protein vbsS 517845 - 513853 - | vicibactin biosynthesis non-ribosomal peptide synthase protein vbsG 518082 - 517864 - | polyketide synthase protein TERM 364 519064 - 519033 - g 90 -2.2 -5.41143 | gap 1, opp_overlap 519033 519059 CATCGCGGAAAAAAA TGGATCAGCGCCTGG CTT CCCT-CGCTGATGCA TTTCATCTTCCTCGA vbsA 518277 - 519263 + | N6-hydroxylysine O-acetyltransferase protein vbsD 519260 - 520678 + | efflux transporter inner membrane protein TERM 365 521080 - 521095 + GT 76 -6.8 -4.431 | AGCTGCTCGGCCGGC TCGGCG TCAC CGTCGA TTTTGTCGATCCCTC rpoI 522423 - 521767 - | RNA polymerase sigma factor protein vbsL 520689 - 521876 + | hypothetical protein TERM 366 522912 - 522956 + G 71 -11.3 -3.48276 | opp_overlap 522879 522907 ACGGTCAAGACGCTG GCGCCGCGCGGCCGCGA CGAGCCGCAAT TCGAGGCGACGCGGCGC TTCTATGACCGGACC vbsC 522588 - 523079 + | vicibactin acetylase protein fhuD 523112 - 523942 + | ferrichrome-iron ABC transporter, substrate-binding protein TERM 367 524654 - 524686 + G 72 -11.9 -3.37464 | TGGCAATCGCAATTG CGCTGAGCGCGCTGG TCA CCAGTGCCGTCGGCG TTATCGGCTTCATCG TERM 368 524990 - 525019 + G 84 -15.7 -3.38812 | overlap 524988 TTGGCCTGCTGCTTC TCGCTGTCGCCGC GCTG GCAGCGGCAGCGA TCTTCTTCGGACGCG fhuB 523942 - 525906 + | iron-hydroxamate transporter permease subunit RHE_PF00466 526669 - 525920 - | dehydrogenase protein TERM 369 527542 - 527526 - g 78 -6.5 -4.56597 | GGCGCTCGCCAAAAA CCTGCTG AGC CAGGAGG ATATCGGCATTCAGG RHE_PF00467 526765 - 527682 + | AraC family transcriptional regulator TERM 370 527718 - 527670 - T 86 -14.5 -3.67026 | gap 1, overlap 527671 AAAAACCATTTCAAA CG-CCGCCGCATGACGAGCGGC GTCAAT GCCGCCCGTCCGGCAGCGGACA GGCTTCGCCGCAGCC TERM 371 527716 - 527671 - T 82 -16 -2.79131 | overlap 527670 AAAACCATTTCAAAC GCCGCCGCATGACGAGCGGC GTCAAT GCCGCCCGTCCGGCAGCGGA CAGGCTTCGCCGCAG fhuF 528465 - 527692 - | ferric iron reductase protein fhuA 530656 - 528482 - | ferrichrome-iron transporter, receptor protein TERM 372 529355 - 529333 - G 75 -12 -3.55444 | GGTCCAGCGCGTAAA TGCCGACCTG CCG CATGTCGGCA TCGGAAGCCAGGATG RHE_PF00470 531041 - 531715 + | hypothetical protein TERM 373 531875 - 531829 - g 86 -15.7 -3.61398 | overlap 531861 531864 GCCTCCCTGGAAGAA CCGGCGGCGGTGCCGATGACC GGGCA GACCAACGACCCCGCCCCCGG CTTCGAGAGTGTAGC RHE_PF00471 531730 - 532266 + | outer membrane lipoprotein TERM 374 532399 - 532376 - T 77 -12.4 -3.28712 | gap 1, opp_overlap 532376 CTCGTTCGTGCACAA GGGCCGGCCAC ATG GCG-CCGGCCC TTGTTGACATGGAAG TERM 375 532376 - 532399 + T 79 -12.4 -3.65046 | opp_overlap 532376 CTCGTTCGTGCACAA GGGCCGGC CACATGGC GCCGGCCC TTGTTGACATGGAAG RHE_PF00472 533246 - 532575 - | small heat shock protein bglSf 535746 - 533281 - | beta-glucosidase protein TERM 376 534128 - 534169 + g 73 -8.7 -4.07568 | gap 2, overlap 534117 ACATCGGCATTGCGG GCCGTTTCGACGGCGGCCG CGATAT CGGCC-TCGCCGA-GCGGC TTTTCGACGCCGAAA TERM 377 534705 - 534739 + g 84 -16.4 -3.06796 | opp_overlap 534689 GCGCCGCGATCTGCG CGCTGCCGCCGCCC ATGACGC GGGCGGTGGCAGCA TTCGGTCCGATGACG TERM 378 535792 - 535807 + H 79 -7.6 -4.64766 | opp_overlap 535791 535794 CGCGCCTGTTAAACC TACCGA TTAC TCGGTA TTTTTAAGATGTCAA TERM 379 535987 - 535951 - H 79 -8.7 -4.27467 | gap 1, overlap 535947 535945 535954 535978 535980 535981 GAACAGCAAGAGAAA CGACGGCGCCGTTCCC GCAAGG GAGAAGAGCGCCG-CG CGGAAATCCTAGCGG RHE_PF00474 536008 - 536547 + | TetR family transcriptional regulator RHE_PF00475 537389 - 536505 - | putative hydrolase protein RHE_PF00476 537520 - 538443 + | transcriptional regulator protein RHE_PF00477 539451 - 538510 - | hypothetical protein RHE_PF00478 539546 - 539869 + | hypothetical protein RHE_PF00479 540670 - 539948 - | two-component response regulator protein TERM 380 540537 - 540561 + g 76 -13.5 -3.23452 | overlap 540532 TGCGCCGACTTGTGG TCGCGGGCGAG CTT CTCGCCGGCGG TTCCGTTCTCCGCCT RHE_PF00480 541916 - 540684 - | two-component sensor histidine kinase protein RHE_PF00481 542196 - 543212 + | sugar ABC transporter, substrate-binding protein TERM 381 543267 - 543214 - f 73 -8.6 -4.08887 | opp_overlap 543226, overlap 543215 AGCAGGCAAAGTAAA TCTCCCGGCGACTGCCGCGCGACC GTAAAT GGCCGCGCGGCATTCTTTGCGAGC AGGCATGGCGGGGCA TERM 382 543266 - 543215 - f 73 -12.1 -3.04609 | opp_overlap 543226, overlap 543214 GCAGGCAAAGTAAAT CTCCCGGCGACTGCCGCGCGACC GTAAAT GGCCGCGCGGCATTCTTTGCGAG CAGGCATGGCGGGGC TERM 383 543226 - 543255 + F 100 -17.1 -3.90744 | opp_overlap 543215 543214 AAATCTCCCGGCGAC TGCCGCGCGACCG TAAA TGGCCGCGCGGCA TTCTTTGCGAGCAGG TERM 384 544254 - 544269 + G 72 -7.5 -4.13014 | TTCGTCGCCGGCGAC CGCCG CCTTAA CGGCG TTTTCGAACTCTGGA RHE_PF00482 543285 - 544736 + | sugar ABC transporter, ATP binding protein RHE_PF00483 544733 - 545683 + | sugar ABC transporter, permease protein RHE_PF00484 545680 - 546630 + | sugar ABC transporter, permease protein RHE_PF00485 546645 - 547559 + | gluconolactonase precursor protein RHE_PF00486 548101 - 547577 - | putative methyl-accepting chemotaxis protein TERM 385 547628 - 547650 + g 82 -11.2 -4.07568 | CACTCCTCCCACGAT GCTGCGGCAG CTG CCGTCGCAGC TTTTGCGCCGAAGGC TERM 386 547690 - 547714 + g 100 -15 -4.17657 | gap 1 CTTGCGGCCGAGGGC CCGCGCCGGCG AAGG CGCCGG-GCGG TTTTCGGATGTGATG RHE_PF00487 550985 - 548115 - | putative alpha-mannosidase protein TERM 387 550129 - 550177 + g 81 -13.3 -3.78087 | gap 3, opp_overlap 550112, overlap 550130 TGGCGCACGAGGCTT TCGCCGGTCGGCATGTTGGTGTCG GGCT CGAC-CCA-CATGCCG-CCGACGG TTTCCCATTTTCCTT TERM 388 550130 - 550176 + g 77 -14.6 -2.85768 | gap 3, opp_overlap 550112, overlap 550129 GGCGCACGAGGCTTT CGCCGGTCGGCATGTTGGTGTCG GGCT CGAC-CCA-CATGCCG-CCGACG GTTTCCCATTTTCCT TERM 389 550448 - 550422 - G 74 -12.2 -3.53012 | GCCGTTTGGGGGAAA GCGCTGCTGCAG TTC CTTCAGCCGCGC CGTCAGGACCTCGAG RHE_PF00488 552355 - 551726 - | hypothetical protein TERM 390 552878 - 552849 - R 81 -9.3 -4.44284 | gap 1, overlap 552850 AACCGAACAGGAAAA GCGGGACCATGTCC GGC GGA-ATGGCCCCGA GAGCGACAACCGACA TERM 391 552877 - 552850 - R 78 -12.8 -3.25486 | gap 1, overlap 552849 ACCGAACAGGAAAAG CGGGACCATGTCC GGC GGA-ATGGCCCCG AGAGCGACAACCGAC hemAf 554192 - 552978 - | 5-aminolevulinate synthase TERM 392 554545 - 554494 - R 88 -16.9 -3.13164 | opp_overlap 554499, overlap 554503 554533 GTGTCAAGCAGGGAA GTTGAC-AGACGGCTTGCTCGATCT TGGC AGATCGAGCAAGCCTCCTCGTCA-C TTGGCGCGATGACGG TERM 393 554499 - 554541 + r 78 -14.3 -2.52676 | gap 1, opp_overlap 554494 554503 554533 AAGCAGGGAAGTTGA C-AGACGGCTTGCTCGATCT TGGC AGATCGAGCAAGCCTCCTCG TCACTTGGCGCGATG TERM 394 554536 - 554503 - R 90 -18.3 -2.9186 | opp_overlap 554499, overlap 554494 554533 AGGGAAGTTGACAGA CGGCTTGCTCGATCT TGGC AGATCGAGCAAGCCT CCTCGTCACTTGGCG RHE_PF00490 555260 - 554583 - | hypothetical protein TERM 395 556038 - 556020 - H 70 -10.2 -3.23216 | GCCGAGGATCAGGAA CAGGCCGG CCG CCAGCCCG AGCACCGAGAGCACC TERM 396 556465 - 556448 - H 100 -14.1 -5.24531 | opp_overlap 556446 556445 ATGCCGGACAAAAAA GCCCCGC CGAA GCGGGGC AAGTTTTGACAACAA TERM 397 556624 - 556597 - H 71 -7.7 -4.14472 | GCAACATTGCTAAAA CATCCCTGGCG TCCTCT CGACAAGGATG AAGAAAATCTAGCTC TERM 398 556740 - 556721 - H 74 -7 -4.46926 | opp_overlap 556721 556729, overlap 556722 CATGCCAGGAGAAAA GCCCCGCA TTCT CGCGGGGA ATCTTTCACTACCCT TERM 399 556739 - 556722 - H 70 -10.5 -3.27674 | opp_overlap 556721 556729, overlap 556721 ATGCCAGGAGAAAAG CCCCGCA TTCT CGCGGGG AATCTTTCACTACCC TERM 400 558431 - 558416 - g 80 -6.1 -4.78149 | CGCATAAGCGAAAAA CCTGC CTCGCC GCAGG GGCTGTCGGGCTCGG RHE_PF00492 557498 - 558460 + | hypothetical protein RHE_PF00493 558987 - 558772 - | hypothetical protein RHE_PF00494 559298 - 558984 - | hypothetical protein RHE_PF00495 560287 - 559640 - | hypothetical protein ccmF 561830 - 560469 - | cytochrome c-type biogenesis protein TERM 401 561020 - 561030 + g 76 -8.2 -4.18018 | overlap 561019 CCGTCCAGATCTTCA GCGC CTC GCGC TTTTCCATGACGAGA ccmE 562294 - 561827 - | cytochrome c-type biogenesis protein CcmE ccmI 563160 - 562291 - | cytochrome c-type biogenesis protein RHE_PF00499 563914 - 563249 - | CRP family transcriptional regulator fixSf 564102 - 563944 - | membrane protein precursor fixIf 566384 - 564099 - | cation transport ATPase protein TERM 402 565619 - 565664 + g 76 -10.4 -3.86897 | gap 3, overlap 565620 TCAGCATCAGCAGCG CCCCGCGCGGCG-CCAGTCTGGC AAG GCC-G-TTGATCGCCGCGCGGGC TTTCTCCCGCATCAC TERM 403 565620 - 565663 + g 74 -13.9 -2.91924 | gap 3, overlap 565619 CAGCATCAGCAGCGC CCCGCGCGGCG-CCAGTCTGGC AAG GCC-G-TTGATCGCCGCGCGGG CTTTCTCCCGCATCA TERM 404 566088 - 566068 - G 71 -12.5 -3.06696 | GTCGGCGTGAAGAGA TGCGCCCGG TAA CCGGCCGCA GCGATCGCCGCCAGA fixHf 566863 - 566381 - | cation pump membrane (nitrogen fixation)protein fixGf 568428 - 566860 - | ferrodoxin oxidase protein TERM 405 568033 - 568017 - G 74 -2.1 -4.93296 | overlap 568020 CGACGACGAGAAAAA GATCGAC CCA GACGGTC TGCGGACAGGCGTAG TERM 406 568524 - 568499 - R 77 -10.5 -3.78034 | overlap 568520 GATGCAGATCAAGAA TGACCTTTCCG GAAG CGAAAAGGCCA CGCCCGGGGTAAGGG TERM 407 568546 - 568520 - R 100 -16.6 -4.27316 | overlap 568499 TTCCGGAAGCGAAAA GGCCACGCCC GGGGTAA GGGCGTGGCC GGAGGACAGCGGGGG fixPf 569658 - 568795 - | cytochrome C oxidase, fixP chain (cbb3-type subunit III) protein fixQf 569812 - 569660 - | cytochrome C oxidase, fixQ chain protein fixOf 570554 - 569820 - | cytochrome C oxidase, fixO chain protein fixNf 571915 - 570563 - | cytochrome C oxidase, fixN chain protein TERM 408 572204 - 572224 + H 71 -8.1 -3.95219 | opp_overlap 572206, overlap 572220 CGTCCCCAGTGCACA GACGACCGC CTC GCGGCCGGC TTTCTCGGATTTCGA TERM 409 572222 - 572206 - H 70 -11.5 -2.89564 | opp_overlap 572204 572220 TCCCCAGTGCACAGA CGACCGC CTC GCGGCCG GCTTTCTCGGATTTC fixKf 572421 - 573152 + | nitrogen fixation transcriptional regulator protein TERM 410 573710 - 573687 - g 72 -3.8 -4.57341 | opp_overlap 573677 573687, overlap 573674 AAGGCTGCCGAAAAA CTGTTCGGAA TGCC TTCGGATCAG ATTTGCGGCCGCAAC fixL 573231 - 575102 + | two-component sensor histidine kinase protein TERM 411 575297 - 575323 + F 86 -7.1 -5.03747 | TTGCCGTGAAGTCGA GCCGGCAGCCG AACCC CGATCGCCGGC TTTTTTCCCGAGTTT TERM 412 575577 - 575565 - g 76 -9.1 -4.07568 | opp_overlap 575573 CCGGCTTCCTGAAAA TCGCC CCC GGCGA CACCGTCACCTTCAT azuPf 575423 - 575866 + | pseudoazurin blue-copper protein TERM 413 575910 - 575876 - f 71 -8 -3.96298 | gap 3, overlap 575872 575871 575877 CAGTGATCAATGAAA GCTGC-GGATGGCCGCG CTTG CGCG-CCATCCCGCA-C ATTGGAGAATAATCA TERM 414 576024 - 576006 - g 70 -11.6 -3.14931 | GTCACCCTCGAGCAA GGCCAGGC GCA GCCAGGCC AGGCGTACAAGGCAA RHE_PF00511 575925 - 576452 + | hypothetical protein TERM 415 576858 - 576899 + G 84 -8.5 -4.43877 | overlap 576824 576860 TCAATGTCGGCGCAC CTTCGGCTGGGTTGCCGGT TGCG GCCGGCCAGCCGGCCGATC TTTCTTTACCGATTG TERM 416 576860 - 576897 + G 90 -15.5 -3.81958 | overlap 576824 576858 AATGTCGGCGCACCT TCGGCTGGGTTGCCGGT TGCG GCCGGCCAGCCGGCCGA TCTTTCTTTACCGAT RHE_PF00512 576473 - 578074 + | putative copper export protein RHE_PF00513 579142 - 578570 - | hypothetical protein TERM 417 578861 - 578875 + g 72 -4.2 -4.60487 | overlap 578843 578852 GATCAGGCCGAGTCT CGCC GAGATCA GGCG TTTTTCAAGCTCATG TERM 418 579599 - 579615 + G 72 -2.1 -4.72497 | overlap 579601 CCTGGCCCTGTTAGC TGCGGCC GCC GGCGGAA TTTTGTTCGTCGCTG norE 579324 - 579863 + | nitric oxide reductase protein norC 580253 - 580705 + | nitric oxide reductase protein norB 580726 - 582066 + | nitric oxide reductase protein norQ 582096 - 582911 + | nitric-oxide reductase protein norD 582915 - 584801 + | nitric oxide reductase protein hemNf 586293 - 584941 - | coproporphyrinogen III oxidase RHE_PF00520 586510 - 586794 + | hypothetical protein TERM 419 587424 - 587454 + G 81 -10.4 -4.13654 | overlap 587426 587448 GATGACCTTTGCCGC GATCGGCGTCAGCT ACA AGCTGCTGCCGATG TTTCTGCTTTCCCAA TERM 420 587426 - 587452 + G 77 -13 -3.66216 | overlap 587424 587448 TGACCTTTGCCGCGA TCGGCGTCAGCT ACA AGCTGCTGCCGA TGTTTCTGCTTTCCC RHE_PF00521 586813 - 588162 + | hypothetical protein RHE_PF00522 588168 - 588698 + | hypothetical protein RHE_PF00523 588685 - 588984 + | hypothetical protein RHE_PF00524 590241 - 589027 - | hypothetical protein nirK 590443 - 591588 + | nitrite reductase protein TERM 421 591597 - 591641 + F 73 -8.5 -4.08394 | gap 1, overlap 591598 591603 591604 AAGCTGACCGGGCGG AGGGGGCGGTGCGCGGGGTC AGGGGC GACC-CGCGCACCATTCTCA TTTTGGGGGCGCTAT TERM 422 591598 - 591640 + F 73 -12 -3.04715 | gap 1, overlap 591597 591603 591604 AGCTGACCGGGCGGA GGGGGCGGTGCGCGGGGTC AGGGGC GACC-CGCGCACCATTCTC ATTTTGGGGGCGCTA TERM 423 591603 - 591635 + F 77 -11.3 -3.68359 | gap 1, overlap 591598 591597 591604 ACCGGGCGGAGGGGG CGGTGCGCGGGGTC AGGGGC GACC-CGCGCACCA TTCTCATTTTGGGGG TERM 424 591604 - 591634 + F 81 -14.8 -2.80533 | gap 1, overlap 591603 591598 591597 CCGGGCGGAGGGGGC GGTGCGCGGGGTC AGGGGC GACC-CGCGCACC ATTCTCATTTTGGGG nirV 591670 - 592635 + | nitrate reductase protein TERM 425 592720 - 592742 + G 86 -12.7 -4.07885 | GCATGCCGCACCGCG CCGCGTCGC GCAGG GTGACGCGG TTTTCGAGCAGGGTG nnrR 592646 - 593320 + | denitrification transcriptional regulator protein nnrU 593333 - 594052 + | denitrification regulator protein RHE_PF00529 594109 - 594441 + | hypothetical protein RHE_PF00530 594574 - 595299 + | two-component response regulator protein RHE_PF00532 598763 - 595866 - | LuxR family transcriptional regulator RHE_PF00531 595596 - 596186 + | hypothetical protein TERM 426 596303 - 596282 - Gf 77 -3.7 -4.84311 | gap 1, opp_overlap 596302, overlap 596286 596287 596289 TGGGATAGAACAAAA GATATGACGC GTC GCG-CATCTC CGCGATGCCGGCTCG RHE_PF00533 598951 - 599604 + | two-component response regulator protein TERM 427 599786 - 599813 + F 100 -18.5 -4.71426 | TCAAGGTCCGCCAGA GGCCGTCTCCG TCCGCC CGGAGACGGCC TTTTCTTCATGCGGC RHE_PF00534 599925 - 601448 + | aldehyde dehydrogenase RHE_PF00535 601752 - 601414 - | hypothetical protein TERM 428 601454 - 601496 + g 100 -21.4 -3.17075 | gap 1, opp_overlap 601422 601455, overlap 601457 GCTTCGATAGCGACA AGAGCGGCGGTCGCC-GTC TGTCTC GACAGGCGACCGCCGCTCA TTGGGTTCCGACAGA TERM 429 601495 - 601455 - G 100 -24.9 -3.39327 | gap 1, opp_overlap 601454 601457, overlap 601422 CTTCGATAGCGACAA GAGCGGCGGTCGCC-GTC TGTCTC GACAGGCGACCGCCGCTC ATTGGGTTCCGACAG TERM 430 601457 - 601493 + g 100 -21.7 -2.78712 | gap 1, opp_overlap 601422 601455, overlap 601454 TCGATAGCGACAAGA GCGGCGGTCGCC-GTC TGTCTC GACAGGCGACCGCCGC TCATTGGGTTCCGAC RHE_PF00536 602146 - 603186 + | epoxide hydrolase protein TERM 431 603244 - 603204 - T 85 -15.6 -3.20348 | gap 1, overlap 603209 CCTAGCAAGAGCCAA CGCAATTGTTCCACGCGCA TTGC CGCGCGTGGAACA-TTCCG ATTGGAGCTTGCGAT TERM 432 603240 - 603209 - T 83 -15.2 -3.20878 | overlap 603204 CAAGAGCCAACGCAA TTGTTCCACGCGCA TTGC CGCGCGTGGAACAT TCCGATTGGAGCTTG RHE_PF00537 603726 - 603259 - | hypothetical protein TERM 433 603604 - 603614 + g 73 -6.8 -4.34402 | opp_overlap 603603 GCCGTCGAACCAGAC GGCT TCA AGCC TTTTCATGTCACCGG RHE_PF00538 604420 - 603719 - | hypothetical protein RHE_PF00539 605847 - 604549 - | dioxygenase protein TERM 434 605165 - 605117 - G 78 -6.6 -4.63218 | gap 2, overlap 605119 TCCTTCGTAAGAAAA TTGCCGCGGTGGCCGCC--GGCCT CGA AGCCCATGGCGATCACCGCGTCGA CACCGTTGGCTTCCA TERM 435 605875 - 605857 - H 78 -12.4 -3.39449 | overlap 605858 CGGCATGAAGATCAA CGGCCGGA CCC TCCGGCCA AGCCCGCTCAGACAG TERM 436 605874 - 605858 - H 75 -13.7 -2.63348 | overlap 605857 GGCATGAAGATCAAC GGCCGGA CCC TCCGGCC AAGCCCGCTCAGACA RHE_PF00540 605968 - 606693 + | oxidoreductase protein RHE_PF00541 606687 - 607157 + | hypothetical protein TERM 437 607516 - 607529 + G 84 -4.5 -5.24129 | gap 1 TCGTCGTCTTCGACA GCGCCG TGC CGG-GC TTTTTTCTCACCCAC RHE_PF00542 607191 - 608180 + | enoyl-CoA hydratase protein TERM 438 608220 - 608188 - f 100 -17.8 -3.58522 | opp_overlap 608188, overlap 608166 ACGACTAGGCCGAAA CGCTGCCCCGCGG-CG CTA CGACCGCGGG-CAGCG GCACCGGGCACGTTC RHE_PF00543 608278 - 608829 + | hypothetical protein TERM 439 609000 - 609026 + G 71 -8.6 -3.9392 | overlap 609002 CTCGAAGTGTTGAAC GCCGCGCGGC AGGCAAG GCTGCGCGTC TTCTTTGCGATGCAC TERM 440 609002 - 609024 + G 70 -9.8 -3.55946 | overlap 609000 CGAAGTGTTGAACGC CGCGCGGC AGGCAAG GCTGCGCG TCTTCTTTGCGATGC RHE_PF00544 608847 - 609482 + | isochorismatase protein RHE_PF00545 609618 - 610286 + | hypothetical protein TERM 441 610325 - 610343 + F 100 -17.4 -3.6053 | overlap 610320 CAAGCTCGGCATATG GGGCGGCC GCG GGCCGCCC TTGCTTTATCAACGG RHE_PF00546 610533 - 611819 + | putative epoxide hydrolase protein TERM 442 611873 - 611844 - T 85 -16.5 -2.52464 | TCGTTTCTGAATGGA GGCCGGACTCAAC CGTG GTTGAGTTCGGCC ATCGCAGGAGCCGGC RHE_PF00547 612325 - 611951 - | putative two-component response regulator protein RHE_PF00548 613047 - 612391 - | two-component response regulator protein TERM 443 613298 - 613337 + r 80 -15.1 -2.57489 | gap 2, overlap 613294 CTGCTCGATCCGCAC GGTGATGG-CGC-GCTGGC TGGT GCCGGCTGCGTCCATCGCC TGGATTGCATTGGTG TERM 444 614103 - 614089 - R 73 -8.5 -4.12902 | opp_overlap 614102 CAATGATCGGCAAAA CCGGG GTTTG CCCGG GCATGGTCCTTGATA TERM 445 614228 - 614244 + r 75 -10.1 -3.71848 | overlap 614216 AGCGATAGCGAGCCT CGCTCTC TTT GAGGGCG TTGTTGATCGACAGC TERM 446 614720 - 614734 + r 76 -7.1 -4.62302 | overlap 614730 614731 CCCCCGCTTCGGCCA CGCGA CGGTA TCGCG TTTTTCGCGCTCTTG RHE_PF00550 616369 - 614771 - | hypothetical protein RHE_PF00551 617526 - 616375 - | putative multidrug resistance efflux pump protein TERM 447 617716 - 617673 - R 85 -13 -3.73224 | gap 1 GGATTGCGGAGGAAA GCGCAGGCAGCCA-TTGCGCC TAT GGCGCAGGCGGCCGCAAGCGC CGTCAAGGAGTCATC TERM 448 617843 - 617827 - R 71 -9.3 -3.71649 | opp_overlap 617823 617827 TGGGGAAATGCTAAA CCCGCGC CCA GCTCGGG TGAATTATACATAGG RHE_PF00552 618770 - 617970 - | putative formate dehydrogenase oxidoreductase protein TERM 449 618669 - 618651 - G 73 -8.1 -3.97636 | opp_overlap 618657 ACCTGAAGCCAGAAA CACTGCC TTGTT GGCAGCG TCCAGCAAGTGGTAT TERM 450 619875 - 619861 - H 70 -2.7 -4.72272 | overlap 619862 CCCGCTTATCAAAAA TGCGC TGGCT GCGCT GCTGCATGTGAATGT RHE_PF00553 619893 - 620255 + | hypothetical protein TERM 451 621044 - 621022 - T 81 -10.6 -4.04174 | CGGCAGATAACCAAA GCCCATGGAC GTC ATCCATAGGC CGGCTCGAAACATGA RHE_PF00554 621800 - 621489 - | hypothetical protein RHE_PF00555 622452 - 622087 - | hypothetical protein RHE_PF00556 622661 - 622446 - | hypothetical protein RHE_PF00557 623665 - 622982 - | hypothetical protein RHE_PF00558 625082 - 624036 - | putative S-adenosylmethionine tRNA ribosyltransferase protein RHE_PF00559 625801 - 625079 - | putative short chain dehydrogenase protein TERM 452 625922 - 625952 + G 71 -11 -3.48395 | overlap 625918 625946 625950 CACCGACGTGTCGCG GCGCAGCGGCGTTG CCT CATCGGCTCTGCGC TTCTATGAGGAGCGT RHE_PF00560 625887 - 626321 + | MerR family transcriptional regulator RHE_PF00561 627827 - 626646 - | hypothetical protein TERM 453 627765 - 627775 + g 74 -2.4 -4.8269 | overlap 627749 GTTGGCGATCTTCTT CGCC AGA GTCG TTTTTCCTGATTGTC TERM 454 627814 - 627842 + g 70 -12.4 -3.14211 | opp_overlap 627803 627829, overlap 627807 ACGACCAGCACGACT CGCGTGTCTGAC ATAGC GTCGGCCACGCG TTGCTCAACGAGCCT RHE_PF00562 628687 - 628298 - | hypothetical protein TERM 455 630202 - 630253 + G 93 -18.1 -3.26471 | gap 1, overlap 630214 630248 CCTGCGCTCACGCAT CGGCGACGAGGACTTCGCGCGCCT GCTCA AGG-GCGAGGAGTTCTCCTCGCCG TTGCTGTCGCAGTGG RHE_PF00563 629408 - 630544 + | putative transcriptional regulator protein RHE_PF00564 631620 - 630574 - | oxidoreductase protein TERM 456 631074 - 631093 + g 72 -2.7 -4.72272 | overlap 631039 631068 TCCCGATATCGCCGA GCGCGCC GTTTGA GCCGTGC TTTTTACTCAGCCGC TERM 457 632072 - 632046 - g 78 -12.2 -3.737 | GAACTTGCCACCAAA GACCGGATCGGC CTG GCCGACGCGGCC AAGACCCTCGTCGTC RHE_PF00565 631959 - 633257 + | putative sugar ABC transporter, substrate-binding protein RHE_PF00566 633549 - 634427 + | putative sugar ABC transporter, permease protein RHE_PF00567 634460 - 635266 + | sugar ABC transporter, permease protein RHE_PF00568 635310 - 636548 + | transcriptional regulator protein RHE_PF00569 636594 - 637448 + | hypothetical protein RHE_PF00570 637471 - 638532 + | sugar ABC transporter, ATP-binding protein TERM 458 638559 - 638611 + F 81 -14.2 -3.08996 | gap 4, opp_overlap 638533 GTCCCCTCCCCTTCG GCCGGGCGC--CG--CCGGGGGCGCG TCCGC CGCGCCCCCGGCCCGAAGTTCCCGGC TCTTCCATGCACATG TERM 459 639565 - 639594 + G 73 -6.3 -4.26076 | gap 1 AGCTCGGCTACCTCA CGCT-GACGGCGCT GAC GGCGGCGACCAGCG TTTTGATCACCATCC TERM 460 639740 - 639773 + G 74 -13.1 -3.2614 | gap 1, overlap 639766 CATTACCCGCTATGA GCCGACCGAC-GTGCC GCA GGCGCAGATGGTCGGC TTCATGTCGACGATG repAf1 638772 - 639980 + | plasmid partitioning protein RepAf1 TERM 461 639975 - 640004 + F 84 -13.7 -3.64703 | overlap 639946 CACCAGGCATGGGGG CGGTGAGTTTGTC GGCT GACAAATTCGCCG TTTCCGTGAAGCAAA repBf1 640050 - 641024 + | plasmid partitioning protein RepBf1 TERM 462 641195 - 641207 + F 83 -7.7 -4.68908 | TCCTCCTCGCATCGT TTCGG TGA CCGAA TTTCTTTTGCCTGAA repCf1 641237 - 642517 + | plasmid replication protein RepCf1