TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.324656 %AT, 8462669 nt, 60132 terms. Intergenic: 0.367912 %AT, H2T: 831621 nt, 5932 terms; T2T: 312900 nt, 4468 terms; H2H: 441663 nt, 5667 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|111017022|ref|NC_008268.1| Rhodococcus jostii RHA1, complete genome (length 7804765) RHA1_ro00001 2581 - 1391 - | hypothetical protein RHA1_ro00002 3556 - 4122 + | hypothetical protein RHA1_ro00003 4147 - 5319 + | hypothetical protein TERM 1 5667 - 5677 + TF 77 -5.4 -4.67904 | TGGGTGACAATGCGG CGAT GGA ATCG TTTTTCGCGTTGCTG TERM 2 5865 - 5849 - Tf 71 -7.9 -4.11216 | CCGGCAGCTGGAAAA GACCGCC AGC AGCGGCC CCGCGATGACGCCCA RHA1_ro00004 6940 - 6182 - | dehydrogenase RHA1_ro00005 6935 - 8449 + | hypothetical protein TERM 3 9044 - 9068 + Tr 100 -21.5 -4.07568 | AGGGGCACGGGGATG GGTGCACGGCG GCT CGCCGTGCACC TTTTCCCACGAGCAG TERM 4 11058 - 11094 + Tr 89 -16.6 -3.29461 | gap 2, overlap 11058 TAGTCGCTTGGCCGG CCCCC-GGC-ACCGCACC CGC GGTGCGGGCGCCCGGGGG TTGTCACGAGGGTTA TERM 5 11058 - 11093 + Tr 81 -16.8 -2.57463 | gap 1, overlap 11058 TAGTCGCTTGGCCGG CCCCCGGC-ACCGCACC CGC GGTGCGGGCGCCCGGGG GTTGTCACGAGGGTT RHA1_ro00006 11435 - 11208 - | hypothetical protein RHA1_ro00007 12456 - 12710 + | hypothetical protein TERM 6 13262 - 13241 - f 76 -13.7 -3.16564 | gap 1 CGGCGAGTCCACGAA GGGCGCGCCG AAC CGGCGC-CCC GCTGCGCGGTCGACA TERM 7 13379 - 13349 - f 80 -15.5 -2.82635 | gap 2, opp_overlap 13371 ATTTCTAGTAGTACA CTCCCCCCTAGGCCC GAA GGGCC--GGGGGGAG TGACCCCCGAAGGGG TERM 8 13395 - 13409 + F 76 -9.2 -4.08216 | overlap 13371 TGACCCCCGAAGGGG GTGGGG TTC CCCCGC TTTTCCGGACGCTCG TERM 9 14911 - 14857 - f 73 -11.8 -3.41527 | overlap 14859 14860 GAACCGGCACCACAA CACCCAGCCCGGCCCCCGATCCCCGA TCC CCGGGGCCCGGGGCCCGGGGCCAGCC CGCCGCCCGTCGAAC TERM 10 14909 - 14859 - f 89 -16.6 -3.27653 | overlap 14857 14860 ACCGGCACCACAACA CCCAGCCCGGCCCCCGATCCCCGA TCC CCGGGGCCCGGGGCCCGGGGCCAG CCCGCCGCCCGTCGA TERM 11 14909 - 14860 - f 91 -19.9 -2.56271 | gap 1, overlap 14859 14857 CCGGCACCACAACAC CCAGCCC-GGCCCCCGATCCCCGA TCC CCGGGGCCCGGGGCCCGGGGCCAG CCCGCCGCCCGTCGA TERM 12 15121 - 15086 - f 82 -15.6 -3.12446 | gap 1, overlap 15077 GACAAAGGCAGCCAA GCGCAC-ATGCAGATCG ACT CGATCCGCATCATGCGC ACAATCGCGGCGGCC RHA1_ro00008 15092 - 15310 + | hypothetical protein RHA1_ro00009 15359 - 15568 + | transposase TERM 13 15594 - 15580 - f 91 -11.4 -4.51799 | overlap 15572 15571 ATGAAACGGAGAAAA CTCCCG GAA CGGGAG GCGGACGAAGACCGT RHA1_ro00010 15608 - 16624 + | transposase mutator family protein TERM 14 19303 - 19283 - g 79 -11.1 -3.97307 | GCGACCGAAGAAGAA GTCGCCGAC GCT GTCGCCGAC CTGCTCAAACGGGCC RHA1_ro00011 18122 - 20401 + | transposase RHA1_ro00012 21916 - 21689 - | glutaredoxin-like protein RHA1_ro00013 23263 - 22043 - | transposase RHA1_ro00014 24447 - 23518 - | oxidoreductase RHA1_ro00015 25021 - 25911 + | DNA-ligase (ATP), C-terminal RHA1_ro00016 25986 - 26459 + | hypothetical protein RHA1_ro00017 26833 - 27300 + | magnesium ABC transporter ATPase RHA1_ro00019 27659 - 27477 - | hypothetical protein RHA1_ro00018 27302 - 27541 + | hypothetical protein RHA1_ro00020 27904 - 27656 - | hypothetical protein RHA1_ro00021 27922 - 28803 + | universal stress protein RHA1_ro00022 28827 - 29423 + | hypothetical protein RHA1_ro00023 30749 - 29439 - | hypothetical protein TERM 15 29719 - 29709 - G 70 -8.2 -3.9122 | GAGCCGGCGAAACAA CCGC ACC GCGG CCAGAATCCGGAAGA RHA1_ro00024 32179 - 30746 - | hypothetical protein RHA1_ro00025 32774 - 32241 - | hypothetical protein RHA1_ro00026 33760 - 32906 - | universal stress protein RHA1_ro00027 34826 - 33810 - | hypothetical protein RHA1_ro00028 35940 - 35002 - | universal stress protein RHA1_ro00029 36743 - 35943 - | ABC transporter permease RHA1_ro00030 37650 - 36733 - | ABC transporter, ATP-binding protein RHA1_ro00031 37808 - 38821 + | hypothetical protein RHA1_ro00032 39313 - 38846 - | hydrogenase maturation protease RHA1_ro00033 40578 - 39310 - | Ni-dependent hydrogenase large subunit RHA1_ro00034 41371 - 40586 - | hydrogenase TERM 16 41159 - 41123 - G 85 -17.9 -3.21416 | GATCGTGACGAGGAA CCGGGACTGCTCCCGCA CCG CGCGGATGCGGTCCCGG TCGGCGGCCGTGGTG RHA1_ro00035 42219 - 41371 - | hydrogenase/ sulfur reductase RHA1_ro00036 42677 - 42216 - | cAMP binding protein RHA1_ro00037 43831 - 42674 - | ferredoxin RHA1_ro00038 44145 - 43864 - | hypothetical protein TERM 17 44046 - 44088 + g 85 -17.7 -3.15861 | gap 1 CCAGGGTGTGGGTGT CGCGGGTTC-GGAGCCGGGC TTGG GCCCGGGTCCTGGACCCGCC TTCGTCGGCGTCGTG RHA1_ro00039 45643 - 44222 - | hypothetical protein RHA1_ro00040 46104 - 45853 - | hypothetical protein RHA1_ro00041 46395 - 47549 + | penicillin-binding protein RHA1_ro00042 48437 - 47559 - | hypothetical protein RHA1_ro00043 48797 - 48504 - | hypothetical protein RHA1_ro00044 48796 - 49329 + | flavodoxin RHA1_ro00045 49933 - 53064 + | trehalose-phosphatase RHA1_ro00046 53709 - 53107 - | hypothetical protein RHA1_ro00047 53898 - 54266 + | hypothetical protein RHA1_ro00048 54366 - 55013 + | response regulator, two-component system TERM 18 55421 - 55441 + G 70 -3.8 -4.46212 | overlap 55428 TATCGGCGACCTGCC CCGTGGTC GCGGG GTCCTCGG TTTTCTCATCACCAA TERM 19 55718 - 55682 - g 70 -13 -3.35996 | gap 1 GATCGCGATCGAGAA CGCCCGCCT-GTACGAG GAGT CCCGGACGAGGCAGGCG TGGCTCGAAGCGACG RHA1_ro00049 55092 - 56813 + | sensor kinase, two-component system RHA1_ro00050 56936 - 57817 + | universal stress protein RHA1_ro00051 58978 - 57830 - | cation transporting ATPase RHA1_ro00052 59250 - 58975 - | cation transporting ATPase RHA1_ro00053 60093 - 59344 - | hypothetical protein TERM 20 60314 - 60277 - g 81 -9.7 -4.2558 | gap 1, opp_overlap 60285 GACGGTGCATGAAAA CCCGAACGCCGCACGCGG TCA CCACGGGCGTCG-TCGTG CGCTCCCTTCGACCC RHA1_ro00054 60270 - 60833 + | acyl-CoA synthetase RHA1_ro00055 60843 - 62357 + | hypothetical protein RHA1_ro00056 62407 - 63360 + | 1-phosphofructokinase RHA1_ro00057 64513 - 63638 - | 3-oxoacyl-[acyl-carrier-protein] synthase III RHA1_ro00058 65552 - 64497 - | 3-oxoacyl-[acyl-carrier-protein] synthase III RHA1_ro00059 65779 - 66369 + | hypothetical protein RHA1_ro00060 66421 - 66678 + | hypothetical protein RHA1_ro00061 66752 - 67639 + | universal stress protein RHA1_ro00062 67975 - 68571 + | potassium channel protein TrkA RHA1_ro00063 68827 - 68585 - | hypothetical protein RHA1_ro00064 69748 - 68903 - | hypothetical protein RHA1_ro00065 71229 - 69745 - | hypothetical protein RHA1_ro00066 71909 - 71478 - | transcriptional regulator RHA1_ro00068 73314 - 72568 - | response regulator, two-component system RHA1_ro00067 71919 - 72722 + | epoxide hydrolase RHA1_ro00069 73472 - 74320 + | hydrolase RHA1_ro00070 74984 - 74280 - | hypothetical protein RHA1_ro00071 75236 - 76717 + | major facilitator superfamily multidrug resistance protein TERM 21 79737 - 79714 - g 71 -11.7 -3.57144 | opp_overlap 79720 GGCGCGATCCGGAAA CGACGACCG AGCGCA CGGTCGCCG ACGTGTTCGGCCGAC TERM 22 80133 - 80153 + G 85 -16.9 -3.55444 | overlap 80123 GACGTCCTGGCGCGC CACGGTGCG TTG CGCACCGTG TTTCCGGACTCGGCG TERM 23 80433 - 80491 + G 75 -15.9 -2.87132 | gap 2 ACCGCGTATGCGAGC C-GGACCGCGGGTGCG-CCCCCGGGCTGG GAG CCGCCCCGGGTGACGTACCCGCAGTACAG TGTGTGGCGCCGCGA RHA1_ro00072 76857 - 81278 + | non-ribosomal peptide synthetase RHA1_ro00073 81330 - 82697 + | sensor kinase, two-component system RHA1_ro00074 83347 - 82670 - | response regulator, two-component system RHA1_ro00075 83452 - 84138 + | phosphatidic acid phosphatase, type 2 RHA1_ro00076 84185 - 84610 + | hypothetical protein RHA1_ro00077 85188 - 84652 - | hypothetical protein RHA1_ro00079 86534 - 85641 - | transposase RHA1_ro00078 85312 - 85698 + | Zn-containing alcohol dehydrogenase, C-terminal RHA1_ro00080 86872 - 86531 - | transposase RHA1_ro00081 86875 - 87810 + | Zn-containing alcohol dehydrogenase, N-terminal TERM 24 88068 - 88032 - g 74 -14.4 -3.32963 | AGGCCGAGGTGACAA TCGCCGTCGGTGAGGA TTTCC TCCACGCCAACGGCGA CACACTGAACCGGGA RHA1_ro00082 87818 - 88729 + | hypothetical protein RHA1_ro00083 88738 - 89190 + | hypothetical protein RHA1_ro00084 89708 - 89196 - | secreted copper binding protein RHA1_ro00085 90451 - 89741 - | enoyl-CoA hydratase TERM 25 92074 - 92132 + G 90 -17.5 -3.44051 | gap 2 CGTCGCCGTCCTCAT CGGTGGCGCGCTGCTGGGGATCGTGGG GGCGCTG CTCGCGATCCCCGTC-GC-CGCCGCCG TTCTGCTCCTCGCCC RHA1_ro00086 90746 - 92182 + | hypothetical protein RHA1_ro00087 92302 - 93687 + | hypothetical protein RHA1_ro00088 94737 - 93691 - | hypothetical protein TERM 26 94988 - 94962 - H 71 -9.2 -3.78934 | opp_overlap 94961, overlap 94928 CTCGTCGCACAAGAA GCGGCGCCGCCC GTA GGGCCGACCCGC ATCAGTTGCGCTTCC RHA1_ro00089 95348 - 95803 + | hypothetical protein TERM 27 97156 - 97206 + G 77 -15.2 -3.14881 | overlap 97187 97188 CGGCGCCGCATGTCA CGACTGCACCGTCAGGTGCTCGAC CAC GACGTGCACCGGTGGGCGCAGTCG TTCCTCGGCGCGTTG RHA1_ro00090 95800 - 97224 + | alpha,alpha-trehalose-phosphate synthase (UDP-forming) RHA1_ro00091 97292 - 98362 + | hypothetical protein RHA1_ro00092 98359 - 99471 + | glycosyltransferase RHA1_ro00093 99468 - 100463 + | hypothetical protein RHA1_ro00094 100460 - 101284 + | sugar transferase RHA1_ro00095 102057 - 101287 - | hypothetical protein RHA1_ro00096 103286 - 102144 - | hypothetical protein RHA1_ro00097 103391 - 103645 + | hypothetical protein RHA1_ro00098 104453 - 103656 - | sigma factor, sigma 70 type, group 3 TERM 28 104265 - 104287 + g 74 -16.2 -2.78384 | opp_overlap 104248 CTCGTGCGCCTCGCC GCGCCCGCCG AAT CGGCGGGCGA TGTGATCGGCGAGCG RHA1_ro00099 104884 - 104453 - | anti-sigma factor, RsbW RHA1_ro00100 105390 - 105031 - | cold shock protein dps 105754 - 106293 + | DNA protection during starvation protein RHA1_ro00102 106333 - 106569 + | hypothetical protein TERM 29 106566 - 106612 + F 71 -12.3 -3.28791 | gap 2, opp_overlap 106566, overlap 106568 106570 CCAGCGCGCCGAACA GTGA-G-ACGGTGCGGGCCGG ATCACGA CCGGCCCGCACCGAGCGTCTC TTCTCCGAGCGGAAT TERM 30 106568 - 106610 + F 74 -13.5 -3.21276 | gap 2, opp_overlap 106566, overlap 106566 106570 AGCGCGCCGAACAGT GA-G-ACGGTGCGGGCCGG ATCACGA CCGGCCCGCACCGAGCGTC TCTTCTCCGAGCGGA TERM 31 106570 - 106607 + F 80 -16.3 -2.50074 | gap 1, opp_overlap 106566, overlap 106568 106566 CGCGCCGAACAGTGA G-ACGGTGCGGGCCGG ATCACGA CCGGCCCGCACCGAGC GTCTCTTCTCCGAGC RHA1_ro00103 106670 - 106948 + | hypothetical protein TERM 32 106966 - 106999 + F 100 -28.3 -3.76379 | CCCCGCACTCCGGAA CCGGGCCTGCCCATC TCAC GATGGGCAGGCCCGG TTTCGTCGCGTATTC TERM 33 107472 - 107511 + G 73 -7 -4.10657 | CTTCGTGATCTCACC CATCGCCGGAGTTGTCGC CGCC GCGGTGGCCCTCGCGATG TTTTGCGGACTCTGG RHA1_ro00104 107026 - 107589 + | hypothetical protein RHA1_ro00105 107669 - 108112 + | hypothetical protein RHA1_ro00106 108548 - 108871 + | hypothetical protein RHA1_ro00107 108868 - 109449 + | hypothetical protein RHA1_ro00108 111190 - 109457 - | hypothetical protein RHA1_ro00109 111737 - 111306 - | hypothetical protein RHA1_ro00110 111753 - 112478 + | hypothetical protein RHA1_ro00111 112600 - 113136 + | anti-sigma factor antagonist RHA1_ro00112 113149 - 113472 + | hypothetical protein RHA1_ro00113 114009 - 113665 - | hypothetical protein RHA1_ro00114 114072 - 114644 + | hypothetical protein RHA1_ro00115 114651 - 115796 + | sigma factor, includes region 2 RHA1_ro00116 117194 - 116172 - | resolvase, N-terminal TERM 34 117342 - 117391 + r 82 -15.9 -3.10796 | opp_overlap 117343 117352, overlap 117349 117352 CTGCACGTGAAGTAC ACGGCAAGAAGCCCGCTAC CAAAAACCTCCT GTAGCGGGCTTCTTGTCGA TATTGGATGCTGCCG TERM 35 117390 - 117343 - R 100 -20 -2.91274 | opp_overlap 117342 117349 117352, overlap 117352 TGCACGTGAAGTACA CGGCAAGAAGCCCGCTACCAAA AACC TCCTGTAGCGGGCTTCTTGTCG ATATTGGATGCTGCC TERM 36 117349 - 117384 + r 73 -12 -3.4277 | opp_overlap 117343 117352, overlap 117342 117352 TGAAGTACACGGCAA GAAGCCCGCTAC CAAAAACCTCCT GTAGCGGGCTTC TTGTCGATATTGGAT TERM 37 117381 - 117352 - R 71 -10.7 -3.67112 | opp_overlap 117352 117349 117342, overlap 117343 AGTACACGGCAAGAA GCCCGCTACCAAA AACC TCCTGTAGCGGGC TTCTTGTCGATATTG RHA1_ro00117 117848 - 117414 - | hypothetical protein RHA1_ro00118 119854 - 117896 - | hypothetical protein TERM 38 118473 - 118489 + g 75 -6.5 -4.45083 | opp_overlap 118470 GGTGCCGGAAGAGCC GCAGCTG CAC CACCTGC TTTTGTGCATGTCCA TERM 39 119258 - 119290 + g 75 -8.2 -4.15698 | opp_overlap 119251, overlap 119271 CCAGTACACCTGGCA GCCGGGGGCCACCG CGGCC CGGAGGCCGCTAGC TTGTTTCTGTAGCTC TERM 40 120776 - 120800 + G 88 -14.9 -3.69354 | overlap 120783 TGCCCTTCGGCGATG CCGTCGCCCGG GAC CCGGGCCGCGG TTTCCGGTTCTGACC RHA1_ro00119 120244 - 120813 + | hypothetical protein RHA1_ro00120 124050 - 120928 - | transposase TERM 41 121156 - 121183 + g 76 -13.6 -3.45023 | gap 1, opp_overlap 121149 GTATATGACGCAGTT GGCGATC-AGTTC GTT GAACTTGATCGCC TTCTCCTGGTGGTCG RHA1_ro00121 125488 - 124505 - | magnesium/cobalt transporter CorA RHA1_ro00122 125574 - 125984 + | hypothetical protein RHA1_ro00123 127603 - 125981 - | dehydrogenase TERM 42 127482 - 127492 + g 70 -8.2 -3.9461 | GACCTGACGGCGCCA CCCG GTT CGGG TTGTTGTTCGAGAAG RHA1_ro00124 128130 - 128819 + | hydrolase RHA1_ro00125 130403 - 129081 - | NADH dehydrogenase RHA1_ro00126 130535 - 130804 + | hypothetical protein phoU1 130844 - 131491 + | phosphate transport system protein PhoU RHA1_ro00128 132119 - 131505 - | methyltransferase RHA1_ro00129 132889 - 132116 - | hypothetical protein RHA1_ro00130 133857 - 132892 - | acyl-CoA dehydrogenase RHA1_ro00131 134519 - 133854 - | glycosyltransferase RHA1_ro00132 135066 - 134575 - | hypothetical protein xdhC 135332 - 135859 + | xanthine dehydrogenase Fe-S binding subunit xdhB 135856 - 136848 + | xanthine dehydrogenase FAD-binding subunit xdhA 136845 - 138941 + | xanthine dehydrogenase molybdopterin binding subunit RHA1_ro00136 139272 - 138952 - | hypothetical protein RHA1_ro00137 139739 - 139278 - | hypothetical protein RHA1_ro00138 142301 - 139944 - | protein kinase/ LuxR family transcriptional regulator RHA1_ro00139 143063 - 142377 - | short-chain dehydrogenase/reductase TERM 43 143171 - 143131 - R 86 -16.2 -3.22475 | gap 1, overlap 143134 TGCACGGGCAGAACA CAATCCGGCGACGTGCCGC ACAG GCGACCCGTCGC-GGATCG GCGCCCACCGATCAG TERM 44 143168 - 143134 - R 86 -14.3 -3.75378 | gap 1, overlap 143131 ACGGGCAGAACACAA TCCGGCGACGTGCCGC ACAG GCGACCCGTCGC-GGA TCGGCGCCCACCGAT RHA1_ro00140 144403 - 143183 - | lipase RHA1_ro00141 171307 - 144521 - | non-ribosomal peptide synthetase TERM 45 145481 - 145464 - G 73 -7.7 -4.16842 | gap 1, overlap 145465 CCGAGGTCGAAGAAA CTGTCGGC GGT GCCGAC-G CGGTCCACGCCCAGC TERM 46 162714 - 162682 - G 70 -14.7 -2.78384 | GGCCCTCGTAGGACA GCGCGGCCGCCTTGG GGT CCACGGAGGCCGCGG CCGCGAGCAGTTCGG TERM 47 170238 - 170274 + g 78 -17.2 -2.78816 | ATCGGGCCGGCGAGG CCCTCCGCGGTGCCGG CGAGC CCGGCATCGCGGCGGA TGTCCTCGAGGCTGC RHA1_ro00142 171855 - 171523 - | hypothetical protein RHA1_ro00143 171854 - 172366 + | hypothetical protein TERM 48 172430 - 172376 - TR 100 -23.7 -3.15999 | overlap 172381 GCCTGACACAGGCAA CCGAAC-CGTACGAACGCCGTCTCGGC TCT GCCGGGGCGGCGTTCGC-CGCGTTCGG GGAGGCTGCGACCCC TERM 49 172424 - 172381 - TR 83 -15.2 -3.20432 | gap 1, overlap 172376 ACACAGGCAACCGAA CCGTACGAACGCCGTCTCGGC TCT GCCGGGGCGGCGTTCGC-CGC GTTCGGGGAGGCTGC TERM 50 172770 - 172813 + Tr 75 -6.6 -4.36914 | gap 1, opp_overlap 172767 172768 172770 GGCACCCCGAAACCA CGACCGGTCGGGCGTCCACGA CAT TCG-GGGTGGTCAACCGCTCG TTTTCTGCACAACCA RHA1_ro00144 204019 - 172901 - | non-ribosomal peptide synthetase TERM 51 176666 - 176684 + g 70 -14.6 -2.71712 | overlap 176665 GGGCAGCGCGGCCTC GTCCGTCG CGA CGACGGAC ATTTCGCCCCCCACC TERM 52 183181 - 183224 + g 73 -12.6 -3.48276 | gap 4, overlap 183181 TCGCCGCGGCCAGCG CC-GCCGTGTCCAGCGGTCCGG TGAG CCGGACCGC-GG-CA-GGCAGG TTGTATGCGGGCGAG TERM 53 201369 - 201356 - G 75 -4.5 -4.56775 | overlap 201364 ACTGCGGCCCAAAAA CTCCA GAAC CGGAG GCCCGTCCGGGGCGG RHA1_ro00145 204956 - 204228 - | dolichyl-phosphate beta-D-mannosyltransferase RHA1_ro00146 206640 - 204937 - | apolipoprotein N-acyltransferase RHA1_ro00147 208234 - 206630 - | hypothetical protein RHA1_ro00148 208753 - 208247 - | hypothetical protein RHA1_ro00149 208958 - 209575 + | hypothetical protein RHA1_ro00150 210262 - 209603 - | response regulator, two-component system RHA1_ro00151 210439 - 210867 + | IMP dehydrogenase RHA1_ro00152 211175 - 210849 - | hypothetical protein RHA1_ro00153 211285 - 211956 + | transcriptional regulator TERM 54 212290 - 212308 + G 73 -10.2 -3.82824 | CCTCGCCGCGTCCGG CGCGGTGG TGG CCGCCGTG TTGTTCTGGATCGTC RHA1_ro00154 212195 - 213754 + | hypothetical protein RHA1_ro00155 214500 - 213835 - | hypothetical protein RHA1_ro00156 215322 - 214594 - | TetR family transcriptional regulator TERM 55 215528 - 215510 - g 78 -13.1 -3.69395 | GGCAGTAGTGAACAA CGGCGCG GCCGA CGCGCCG AGGGCGACGGCCCTC RHA1_ro00157 215391 - 217022 + | amino acid transporter RHA1_ro00158 217083 - 218738 + | metal-dependant glycoprotease RHA1_ro00159 218855 - 219259 + | hypothetical protein RHA1_ro00160 220439 - 219270 - | receptor-like histidine kinase of 2 component system RHA1_ro00161 220480 - 221247 + | hypothetical protein RHA1_ro00162 221270 - 222790 + | modulator of DNA gyrase protein, TldD RHA1_ro00163 222787 - 224148 + | modulator of DNA gyrase protein, TldD RHA1_ro00164 224367 - 224573 + | hypothetical protein RHA1_ro00165 224570 - 224917 + | hypothetical protein RHA1_ro00166 225014 - 224886 - | hypothetical protein RHA1_ro00167 225544 - 225020 - | hypothetical protein RHA1_ro00168 225624 - 226208 + | TetR family transcriptional regulator RHA1_ro00169 226533 - 226267 - | hypothetical protein RHA1_ro00170 227076 - 226675 - | hypothetical protein TERM 56 226953 - 227004 + g 78 -13.8 -3.5393 | gap 3, opp_overlap 226951 226953 CCGTCCACATCAACA GACGGTCACCGTCGGCGGCGGC-CC ACAGC GGCGTCGCCACCGG-GGTG-CCGTC TTTCCGAAACGTGGT cobN 230918 - 227109 - | cobaltochelatase TERM 57 231329 - 231368 + GH 77 -11.2 -3.71873 | GCACCCTGTTCACCC TCGACGACGGGCGCGGCG ACGT CTCGGCGCTCGGCGGCGA TTTCGGTGTCCATGC RHA1_ro00172 230917 - 232050 + | ferredoxin--nitrite reductase RHA1_ro00173 232075 - 232701 + | precorrin-8X methylmutase RHA1_ro00174 232698 - 234200 + | bifunctional S-adenosyl-L-methionine-precorrin-2 methyl transferase/precorrin-3 methylase Cob I/J RHA1_ro00175 235117 - 234206 - | beta lactamase TERM 58 234566 - 234602 + g 82 -16.5 -3.28712 | opp_overlap 234569 CGTCGCGCTCGCATA CGACGGGTCGTAGGCGG ATA CCGTCCACGCCTCGTCG TTGTCGGCCAGCGCC RHA1_ro00176 236058 - 235114 - | LysR family transcriptional regulator TERM 59 236030 - 235976 - G 72 -3.5 -4.55697 | gap 2, overlap 235977 235978 235980 ACGGCGACAAAGAAA CTGAGGTGG-CGGAGCAGATCC-ATGG CGA CCATTGAATCAGTTCCGGCCGCCCCCA TCTCGCGACGCCATC RHA1_ro00177 236155 - 237108 + | beta-lactamase, penicillin binding protein TERM 60 237165 - 237122 - T 93 -18.9 -3.16881 | GAGCCATCTGAGCAA GGCGCGGGGAGCC-GGCCGAC CTGT GACGGCCCGACTCCCC-CGCC GCCGAAGGCTACGGG RHA1_ro00178 237593 - 237273 - | serine recombinase RHA1_ro00179 238301 - 238441 + | hydroxyquinol 1,2-dioxygenase RHA1_ro00180 238588 - 239337 + | hypothetical protein RHA1_ro00181 239397 - 239858 + | transcriptional regulator RHA1_ro00182 240478 - 240176 - | hypothetical protein RHA1_ro00183 241089 - 240649 - | redox-sensitive transcriptional activator SoxR TERM 61 241846 - 241875 + Gr 71 -9.9 -3.71552 | GGACCCACATGCTGG CGCTGATCGCGGT CGGT GCCGCGTTCATCG TTCTCTTCCTGGCCT RHA1_ro00184 241083 - 242567 + | multidrug ABC transporter RHA1_ro00185 243382 - 242546 - | citrate lyase RHA1_ro00186 243800 - 243513 - | hypothetical protein RHA1_ro00187 244497 - 243868 - | hypothetical protein RHA1_ro00188 245843 - 244980 - | LuxR family transcriptional regulator RHA1_ro00189 245955 - 247559 + | acyl CoA synthetase, AMP-binding protein RHA1_ro00190 247642 - 248373 + | hypothetical protein RHA1_ro00191 248615 - 250018 + | hypothetical protein RHA1_ro00192 250135 - 250452 + | chorismate mutase TERM 62 250527 - 250492 - f 84 -17 -2.83343 | gap 1, opp_overlap 250495, overlap 250495 ATACCGAGCACGAGA GCAGTGCCCAGCAGTCA CCA TGAC-GCTGGGCACTGT TCGCCTGTCCAGCGC TERM 63 250524 - 250495 - f 84 -17.3 -2.67515 | gap 1, opp_overlap 250495, overlap 250492 CCGAGCACGAGAGCA GTGCCCAGCAGTCA CCA TGAC-GCTGGGCAC TGTTCGCCTGTCCAG TERM 64 250495 - 250524 + F 88 -17.3 -3.07962 | gap 1, opp_overlap 250495 250492 CCGAGCACGAGAGCA GTGCCCAGCAGTCA CCA TGAC-GCTGGGCAC TGTTCGCCTGTCCAG RHA1_ro00193 250511 - 251125 + | hypothetical protein RHA1_ro00194 251750 - 251271 - | hypothetical protein TERM 65 251734 - 251712 - G 70 -3.4 -4.39889 | gap 1 ATAACCACACGAAAA GCAG-CGAC GGCATA GTCGACCGC GCGGTCCCGGATTCA RHA1_ro00195 251801 - 252727 + | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro00196 253125 - 252739 - | hypothetical protein RHA1_ro00197 254422 - 253283 - | RNA polymerase factor sigma-70 RHA1_ro00198 254927 - 254430 - | gluconolactanase RHA1_ro00199 256215 - 254932 - | serine-type D-Ala-D-Ala carboxypeptidase RHA1_ro00200 256240 - 256926 + | oxalate decarboxylase RHA1_ro00201 256923 - 257291 + | oxalate decarboxylase RHA1_ro00202 257753 - 257905 + | hypothetical protein RHA1_ro00203 258190 - 258903 + | hypothetical protein RHA1_ro00204 258909 - 260090 + | hypothetical protein RHA1_ro00205 260087 - 260500 + | gas vesicle synthesis protein RHA1_ro00206 260500 - 261288 + | gas vesicle synthesis protein RHA1_ro00207 261292 - 261546 + | gas vesicle synthesis protein RHA1_ro00208 261553 - 261843 + | gas vesicle synthesis protein RHA1_ro00209 261840 - 262247 + | gas vesicle synthesis protein RHA1_ro00210 262234 - 263013 + | gas vesicle synthesis protein RHA1_ro00211 263018 - 263227 + | gas vesicle protein RHA1_ro00212 263220 - 263552 + | gas vesicle protein, GvpK RHA1_ro00213 263762 - 263574 - | hypothetical protein RHA1_ro00214 264924 - 263866 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase RHA1_ro00215 265667 - 264921 - | short chain dehydrogenase TERM 66 265838 - 265867 + G 78 -16.3 -3.01712 | CATTCGCAGTGCGGT CGGCGCTCGCGGC GGCA GCCGCGCTCGCCG TCTTCGCAACACCCG RHA1_ro00216 265816 - 266136 + | hypothetical protein RHA1_ro00217 266845 - 266165 - | hypothetical protein RHA1_ro00218 266981 - 268015 + | oxidoreductase RHA1_ro00219 268397 - 268089 - | hydrolase RHA1_ro00220 268396 - 268773 + | hypothetical protein RHA1_ro00221 268975 - 269316 + | hypothetical protein RHA1_ro00222 269848 - 269378 - | hypothetical protein RHA1_ro00223 269918 - 270688 + | MerR family transcriptional regulator RHA1_ro00224 271430 - 270639 - | SAM-dependent methyltransferase RHA1_ro00225 271429 - 271851 + | hypothetical protein RHA1_ro00226 272957 - 271866 - | ABC sugar transporter, periplasmic solute-binding protein RHA1_ro00227 273108 - 274472 + | hypothetical protein RHA1_ro00228 274472 - 275461 + | ABC amino acid transporter, periplasmic substrate binding protein RHA1_ro00229 275923 - 275519 - | hypothetical protein RHA1_ro00230 276863 - 276099 - | haloacid dehalogenase RHA1_ro00231 277291 - 276965 - | hypothetical protein TERM 67 291653 - 291633 - g 72 -13.9 -3.17392 | opp_overlap 291627 291638 GACGCTCGAATGCAA CCGGTCCCG ATC CGGGCCCGG GGCGAGTTGTACATC RHA1_ro00232 277548 - 304163 + | non-ribosomal peptide synthetase RHA1_ro00233 306706 - 304139 - | non-ribosomal peptide synthetase RHA1_ro00234 307871 - 307041 - | short chain dehydrogenase RHA1_ro00235 308578 - 307868 - | thioesterase RHA1_ro00236 308758 - 309312 + | hypothetical protein RHA1_ro00237 309577 - 310521 + | DNA ligase (ATP), C-terminal RHA1_ro00238 310530 - 311678 + | hypothetical protein RHA1_ro00240 313134 - 312022 - | aryl-alcohol dehydrogenase (NADP+) RHA1_ro00239 311681 - 312100 + | isopentenyl-diphosphate delta-isomerase RHA1_ro00241 313256 - 314179 + | AraC family transcriptional regulator TERM 68 314905 - 314869 - g 74 -14.6 -3.07816 | gap 1, opp_overlap 314899 314900 GTCGCAGTCATGGAA CCTGGATCGACGATCGT GAAC ACC-TCGTCGATCCAGG GGACGAATCCGTCTC RHA1_ro00242 314326 - 315222 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro00243 315996 - 315253 - | ATP-dependent Clp protease ATP-binding subunit TERM 69 316025 - 316045 + H 74 -11.1 -3.66178 | opp_overlap 316025, overlap 316006 316005 GTTGACGCACAGCAA GCGTCAACC CCA GGTTGTCGC TTTCGACTTCCGCGA RHA1_ro00244 316127 - 316489 + | hypothetical protein RHA1_ro00245 316489 - 317835 + | hypothetical protein RHA1_ro00246 317859 - 318542 + | hypothetical protein RHA1_ro00247 318672 - 319661 + | rod shaping protein, MreB RHA1_ro00248 322505 - 319662 - | cell division protein RHA1_ro00249 323758 - 322526 - | hypothetical protein RHA1_ro00250 325544 - 323973 - | hypothetical protein TERM 70 324336 - 324312 - G 74 -11.3 -3.68222 | GTCGAAGTGGAAGAA GACGACGTCGG TCA CCGGCGCCGCC CACCGCAACAGGTCG TERM 71 325763 - 325804 + G 74 -12.2 -3.57561 | overlap 325764 GACCAGTTCGCGGAC ATCTTCCGGGACGTCGCC AGTCTC GGCGTCGTCCGGGAGGAC TTTCACCGATTCGAC TERM 72 325764 - 325803 + G 70 -15.7 -2.74322 | overlap 325763 ACCAGTTCGCGGACA TCTTCCGGGACGTCGCC AGTCTC GGCGTCGTCCGGGAGGA CTTTCACCGATTCGA RHA1_ro00251 325703 - 326185 + | hypothetical protein RHA1_ro00252 326374 - 326796 + | hypothetical protein RHA1_ro00253 327004 - 328536 + | amino acid permease RHA1_ro00254 328544 - 329956 + | FAD-dependent oxygenase RHA1_ro00255 329970 - 330311 + | nuclease RHA1_ro00256 330953 - 330324 - | uracil phosphoribosyltransferase RHA1_ro00257 332238 - 330973 - | hypothetical protein TERM 73 331967 - 332018 + g 73 -7.8 -4.13945 | gap 1, overlap 331978 GCATCCAGCTCGGCC TTGCGGTCCAC-GCCGCCGGCTTCG AAA TGGCGCCAGCGGCTGTGGTACGGAA TTTTCAGGTCGGGAT RHA1_ro00258 333506 - 332235 - | hypothetical protein TERM 74 333555 - 333527 - H 84 -14.5 -3.33696 | opp_overlap 333526, overlap 333509 TCCTCCGTTAAGGAA GGCCCGGCGGCAC GGG ATGCCGCCGGAAC GTGTCTCCGGCGCCG RHA1_ro00259 333624 - 335081 + | hypothetical protein RHA1_ro00260 335801 - 335334 - | hypothetical protein TERM 75 335656 - 335637 - G 85 -16.4 -3.59979 | GCGGGGTATCTGAAA CGGCGCCG ACAC CGGCGCCG CTGTGGCCGCACCAG RHA1_ro00261 336454 - 336038 - | hypothetical protein RHA1_ro00262 336560 - 337249 + | TetR family transcriptional regulator chaA 337391 - 338350 + | sodium calcium/ proton antiporter TERM 76 338808 - 338860 + G 74 -12.9 -3.58037 | gap 3, overlap 338809 338813 338815 TGCCGAAGGAGTGGG C-CGACTTCGCCGCGAGCGCGTTGTC GCCC GTCAGCG-GCTCGTGGCGAA-TCGTG TTTCCGGCGTTCGTC TERM 77 338809 - 338858 + G 82 -16.6 -3.36569 | gap 2, overlap 338808 338813 338815 GCCGAAGGAGTGGGC CGACTTCGCCGCGAGCGCGTTGTC GCCC GTCAGCG-GCTCGTGGCGAA-TCG TGTTTCCGGCGTTCG TERM 78 338813 - 338855 + G 80 -17.1 -2.84504 | gap 1, overlap 338809 338808 338815 AAGGAGTGGGCCGAC TTCGCCGCGAGCGCGTTGTC GCCC GTCAGCG-GCTCGTGGCGAA TCGTGTTTCCGGCGT RHA1_ro00264 338405 - 338959 + | hypothetical protein RHA1_ro00265 339521 - 338994 - | PadR family transcriptional regulator RHA1_ro00266 339520 - 340107 + | hypothetical protein RHA1_ro00267 340513 - 340839 + | hypothetical protein RHA1_ro00268 341134 - 341385 + | hypothetical protein RHA1_ro00269 341837 - 341424 - | redox protein RHA1_ro00270 343198 - 341834 - | dibenzothiophene desulfurziation enzyme RHA1_ro00271 344296 - 343211 - | ABC transporter, subtrate-binding component RHA1_ro00272 345087 - 344350 - | ABC transporter, ATP-binding component RHA1_ro00273 345950 - 345087 - | ABC transporter, permease component RHA1_ro00274 346176 - 346799 + | GntR family transcriptional regulator RHA1_ro00275 346902 - 347624 + | hypothetical protein RHA1_ro00276 348893 - 347916 - | purine nucleosidase RHA1_ro00277 349350 - 348985 - | hypothetical protein RHA1_ro00278 349515 - 350399 + | hypothetical protein RHA1_ro00279 351666 - 350404 - | protein kinase RHA1_ro00280 351988 - 351722 - | hypothetical protein RHA1_ro00281 353200 - 352088 - | hypothetical protein RHA1_ro00282 353679 - 353287 - | hypothetical protein RHA1_ro00283 356866 - 353828 - | protein kinase RHA1_ro00284 357504 - 357214 - | signalling protein RHA1_ro00285 357816 - 358304 + | hypothetical protein RHA1_ro00286 358391 - 358597 + | molybdenum-pterin binding protein RHA1_ro00287 359907 - 358630 - | signal transduction histidine kinase in 2 component regulatory system RHA1_ro00288 361254 - 359989 - | hypothetical protein RHA1_ro00289 361424 - 362338 + | hypothetical protein RHA1_ro00290 362405 - 362722 + | hypothetical protein RHA1_ro00291 363676 - 362762 - | exodeoxyribonuclease III RHA1_ro00292 363832 - 365406 + | hypothetical protein RHA1_ro00293 365396 - 366049 + | hypothetical protein RHA1_ro00294 366327 - 367085 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro00295 367161 - 367793 + | hypothetical protein RHA1_ro00296 368207 - 368617 + | hypothetical protein TERM 79 368934 - 368966 + G 79 -11.9 -4.03413 | CTCGGCACACTGCCG CCCCAGCGCATCGAG CAA CTCGACGCGATCGGG TTTCTGTGGAGCGAT RHA1_ro00297 368769 - 369269 + | hypothetical protein RHA1_ro00298 369410 - 370369 + | AraC family transcriptional regulator RHA1_ro00299 370504 - 371142 + | hypothetical protein RHA1_ro00300 372382 - 371159 - | MmgE/PrpD family protein RHA1_ro00301 372571 - 374121 + | major facilitator transporter RHA1_ro00302 374933 - 374193 - | GntR family transcriptional regulator RHA1_ro00303 375304 - 376494 + | acyl-CoA dehydrogenase RHA1_ro00304 376491 - 377030 + | acyl-CoA transferase, N-terminal RHA1_ro00305 377035 - 377703 + | CoA-transferase, C-terminal RHA1_ro00306 377711 - 378688 + | citrate (pro-3S)-lyase beta subunit RHA1_ro00307 378692 - 379222 + | MaoC protein RHA1_ro00308 379501 - 380937 + | aldehyde dehydrogenase TERM 80 381085 - 381134 + G 95 -20.9 -3.38218 | gap 1, opp_overlap 381085 CCGAGTCGTCCACAA TGCCGATCGGCATCGCTTCGAACT CCG GGTTCGAGGAGA-GCCGGTCGGCA TTCTGGGGTATTTCG TERM 81 381134 - 381085 - g 82 -15.8 -3.29511 | gap 1, opp_overlap 381085 CCGAGTCGTCCACAA TGCCGATCGGCATCGCTTCGAAC TCCGG GTTCGAGGAGA-GCCGGTCGGCA TTCTGGGGTATTTCG RHA1_ro00309 380960 - 381280 + | hypothetical protein TERM 82 381635 - 381677 + F 90 -15.5 -3.55071 | gap 1, opp_overlap 381615, overlap 381638 CGATCGTCACGGCCG TCCCGTCCGGGCTCGCGGGG CACA CCCCGCGAGCCCAC-CGTGA TTTCCGCAGGTATGG TERM 83 381638 - 381674 + F 80 -15.8 -2.90813 | gap 1, opp_overlap 381615, overlap 381635 TCGTCACGGCCGTCC CGTCCGGGCTCGCGGGG CACA CCCCGCGAGCCCAC-CG TGATTTCCGCAGGTA RHA1_ro00310 381867 - 382238 + | transposase RHA1_ro00311 382235 - 383128 + | transposase RHA1_ro00312 383722 - 383198 - | enoyl-CoA hydratase, C-terminal RHA1_ro00313 384379 - 384050 - | hypothetical protein RHA1_ro00314 384397 - 384828 + | hypothetical protein RHA1_ro00315 384981 - 386462 + | adenylosuccinate lyase TERM 84 387622 - 387609 - g 79 -2.3 -4.95155 | CCGAGAGCAGAAAAA TGCTG GACA CGGCA CTCGAGATCTTCCAC RHA1_ro00316 386573 - 387655 + | monoxygenase RHA1_ro00317 388415 - 387882 - | hypothetical protein TERM 85 388227 - 388242 + g 72 -6.8 -4.3208 | overlap 388231 CGCGTGATTGATGCA GCCACG AGAA TGTGGC TTTTCGATTGTCACC RHA1_ro00318 389286 - 388549 - | transcriptional regulator TERM 86 389338 - 389358 + r 80 -15.5 -2.89191 | opp_overlap 389331, overlap 389316 GTGCAACATTTCGTA CTGTGCCGA TTA TCGGCACAG TATGTCGAAATGTCC RHA1_ro00319 389866 - 389396 - | thioesterase RHA1_ro00320 390921 - 390037 - | hydrolase RHA1_ro00321 391325 - 390918 - | hypothetical protein leuB1 391744 - 392760 + | 3-isopropylmalate dehydrogenase RHA1_ro00323 393187 - 392765 - | ArsR family transcriptional regulator RHA1_ro00324 393253 - 394539 + | major facilitator transporter TERM 87 395316 - 395290 - g 70 -8.7 -3.85698 | gap 1, overlap 395264 CGCGGCGCCGACAAA GGCGACGATGCT CGTC AGC-TCGGCGCC CACCACTACATCGAT adh1 394684 - 395697 + | alcohol dehydrogenase RHA1_ro00326 396201 - 395728 - | hypothetical protein RHA1_ro00327 396686 - 396210 - | MarR family transcriptional regulator TERM 88 396737 - 396705 - R 77 -13 -3.4178 | opp_overlap 396705 396708, overlap 396708 ACCAGGCTACCAGAA TAATTCGTGCAATA ACTAA TATTGCACGAATCA TTCTGGAGGTTGCCG TERM 89 396734 - 396708 - R 81 -12.5 -3.84674 | opp_overlap 396708 396705, overlap 396705 AGGCTACCAGAATAA TTCGTGCAATA ACTAA TATTGCACGAA TCATTCTGGAGGTTG RHA1_ro00328 397452 - 396760 - | hypothetical protein RHA1_ro00329 398288 - 397461 - | thiosulfate sulfurtransferase TERM 90 399449 - 399393 - g 74 -15.9 -2.77899 | gap 1 CCGCTCGACGAACCA CGCGATCACGTCGGCATCCAGCGCCA GAAGAA CGG-GCTGAACGCCGTCGGGATCGCA CCCGTCGTCGGCAGG TERM 91 399622 - 399608 - g 73 -7 -4.11394 | AGCCGACCTCGAAAA GCTGGG TTT CCCCGC CCGTCCGTCGCCCTG nirA 398394 - 400076 + | ferredoxin--nitrite reductase RHA1_ro00331 400638 - 400312 - | hypothetical protein RHA1_ro00332 401299 - 400814 - | hypothetical protein RHA1_ro00333 401293 - 401811 + | hypothetical protein RHA1_ro00334 404001 - 401833 - | excinuclease ABC subunit A RHA1_ro00335 404011 - 404334 + | hypothetical protein RHA1_ro00336 405035 - 404499 - | dehydrogenase E1 component beta subunit, C-terminal RHA1_ro00337 405524 - 405108 - | hypothetical protein RHA1_ro00338 406747 - 405581 - | sarcosine oxidase beta subunit gdhA1 408053 - 406905 - | glutamate dehydrogenase (NAD(P)+) RHA1_ro00340 409645 - 408089 - | aldehyde dehydrogenase (NAD+) RHA1_ro00341 411094 - 409646 - | hypothetical protein RHA1_ro00342 411265 - 412194 + | LysR family transcriptional regulator RHA1_ro00343 413346 - 412216 - | transcriptional regulator TERM 92 412585 - 412614 + g 74 -10.7 -3.78329 | gap 1, overlap 412586 412609 GATCGGTCCCATCGA TTCGTCGTGCCGGG CGA CCCGG-ACGCCGAG TTTGGCTTGCTGCCA TERM 93 413302 - 413275 - G 78 -9.8 -4.21194 | gap 1 GGCGATCAGCGAAAA GGC-CCGGTCGAC CAG GACGACCGATGCC GACAGGCGTTCGGCC TERM 94 414367 - 414377 + G 70 -8.2 -3.8211 | CCAACTCCGTGATCG CCCG CAT CGGG TTCTTCTACATCGGC RHA1_ro00344 413484 - 415067 + | amino acid/polyamine transporter TERM 95 415124 - 415068 - Tf 100 -29.6 -3.33696 | gap 1, opp_overlap 415074, overlap 415071 CCCGCCTCGAAGTAA CACCCCGGGTGGCGGCGGGTGAGACCA GACA CGGTCTCACCCGCCGCCACCCTTG-TG TCTGCACACCCGGGG TERM 96 415122 - 415071 - Tf 100 -32.4 -2.54098 | opp_overlap 415074, overlap 415068 GCCTCGAAGTAACAC CCCGGGTGGCGGCGGGTGAGACCA GACA CGGTCTCACCCGCCGCCACCCTTG TGTCTGCACACCCGG TERM 97 415074 - 415119 + TF 100 -36.4 -3.58726 | opp_overlap 415071 415068 TCGAAGTAACACCCC GGGTGGCGGCGGGTGAGACC AGACAC GGTCTCACCCGCCGCCACCC TTGTGTCTGCACACC RHA1_ro00345 417991 - 415142 - | oxidoreductase, N-termminal TERM 98 418017 - 417982 - Gf 74 -15 -2.63715 | opp_overlap 417973 417970 ATTCAGCGGAGATCA TTCGTAGCATGCTA CATGCACC TAGCATGCTACGAA CAGCCCCGTGTTGTT RHA1_ro00346 417990 - 418772 + | GntR family transcriptional regulator RHA1_ro00347 420499 - 418781 - | hypothetical protein rocA1 420662 - 422317 + | 1-pyrroline-5-carboxylate dehydrogenase TERM 99 422891 - 422907 + G 70 -12.3 -3.28712 | GGGACCTTTCCGGGC CCGGATC GCG GATCCGG TTGTGCAAGGGCGCG RHA1_ro00349 422317 - 423282 + | proline dehydrogenase RHA1_ro00350 423700 - 423335 - | hypothetical protein RHA1_ro00351 423986 - 423735 - | hypothetical protein RHA1_ro00352 424030 - 424338 + | hypothetical protein RHA1_ro00353 424395 - 424832 + | hypothetical protein RHA1_ro00354 424969 - 425556 + | hypothetical protein TERM 100 425602 - 425584 - f 75 -10.3 -3.85698 | TCCGCCGCGGACAAA GCTCGAG GCGAA CTCGAGC CCGGCAGAATATTTC citA1 425932 - 426495 + | citrate (Si)-synthase RHA1_ro00356 427636 - 426590 - | AraC family transcriptional regulator RHA1_ro00357 428065 - 428304 + | hypothetical protein TERM 101 428613 - 428588 - g 72 -13.9 -3.21099 | opp_overlap 428574 CGCGGCGACGAGCAA CGCCCGGCCGC GCTT GCGGCCATGCG CGACATCGTTGCCGG RHA1_ro00358 428423 - 429496 + | phenylacetaldoxime dehydratase amdA 429496 - 431055 + | amidase nthA 431128 - 431751 + | nitrile hydratase alpha subunit nthB 431777 - 432415 + | nitrile hydratase beta subunit TERM 102 432486 - 432439 - f 93 -19.3 -3.15544 | gap 2 CCGCACTGTCACCAA CGGCGTGGGCGGGT-ACGCA-AC CCGA GTGCGCGTTACCCGCCCACGCCC CATAGCCGGGATCTC RHA1_ro00362 432528 - 433754 + | CobW protein RHA1_ro00363 434387 - 433860 - | hypothetical protein TERM 103 434576 - 434565 - R 78 -4.4 -4.75372 | opp_overlap 434567 434568, overlap 434567 434568 ATTACTTAGCAAAAA GAGT TAGC ACTC CCACGATACGAGTGC TERM 104 434567 - 434595 + r 72 -3.2 -4.67651 | opp_overlap 434565 434567 434568, overlap 434568 TACTTAGCAAAAAGA GTTAGCACTC CCACGATAC GAGTGCTAAA TTTCTTTTGGGGTCT RHA1_ro00364 435252 - 434752 - | hypothetical protein TERM 105 435098 - 435121 + g 89 -6 -5.14965 | gap 1, overlap 435101 ATGCTTGCACACCTG TG-AGCCGCGA ACA TGGCGGCTTCA TTTTTTGGTCGCCAT RHA1_ro00365 436238 - 435339 - | hydrolase TERM 106 436486 - 436501 + r 73 -6 -4.34267 | overlap 436488 TGCCCCGAAGAGGCA GAGGGG ACGA CCCCAC TTTTCGATTCTGTAG TERM 107 436599 - 436556 - R 71 -12.3 -3.21218 | gap 1, opp_overlap 436571, overlap 436557 ATGCGTCAGGAGGAA GTGGCACCGGTGCCGCCACC CATCC GGTGGCGGCGGCTGCGCC-C GTGGAGCCGCCACCA RHA1_ro00366 437565 - 436723 - | enoyl-CoA hydratase RHA1_ro00367 439117 - 437600 - | long fatty acid CoA ligase RHA1_ro00368 440743 - 439310 - | major facilitator superfamily multidrug resistance protein RHA1_ro00369 441730 - 440768 - | phthalate dioxygenase reductase RHA1_ro00370 441838 - 442629 + | short chain dehydrogenase RHA1_ro00371 442657 - 443520 + | hydrolase RHA1_ro00372 443606 - 444277 + | tetracycline repressor protein RHA1_ro00373 445879 - 444380 - | betaine-aldehyde dehydrogenase TERM 108 444413 - 444436 + g 74 -15.4 -3.05596 | CAGGTGGACGGTCTT GGTCTCGAAG AACT CTTCGAGACC TTCGATGCCACCCTC RHA1_ro00374 446723 - 445899 - | carveol dehydrogenase RHA1_ro00375 447889 - 446903 - | acetyltransferase RHA1_ro00376 448058 - 449227 + | ring hydroxylating dioxygenase, large subunit of terminal oxygenase TERM 109 449309 - 449284 - T 93 -19.1 -3.16191 | opp_overlap 449284 CCACACTTTCACGAA GGGGACCCGAT CACG ATCGGGTCCCC TTCCTCACCTCAACT TERM 110 449284 - 449309 + T 93 -19.1 -3.16683 | opp_overlap 449284 CCACACTTTCACGAA GGGGACCCGAT CACG ATCGGGTCCCC TTCCTCACCTCAACT RHA1_ro00377 450577 - 449324 - | cytochrome P450 CYP254 TERM 111 450629 - 450573 - G 85 -16.4 -3.55548 | opp_overlap 450584, overlap 450574 GAACACCCTTCGAAA GCCACTCGGCGCGTCGAGCGTCCACG TAGTT CGTGAGCGATCGACGCGCCGTTCGGA TGGCACGGAAATATC TERM 112 450628 - 450574 - G 83 -19.9 -2.73007 | opp_overlap 450584, overlap 450573 AACACCCTTCGAAAG CCACTCGGCGCGTCGAGCGTCCACG TAGTT CGTGAGCGATCGACGCGCCGTTCGG ATGGCACGGAAATAT RHA1_ro00378 450925 - 450698 - | ferredoxin FdxD TERM 113 450934 - 450961 + r 77 -12 -3.68302 | CAGTCATGATCGTTA CTCTTCGCCGGT GACC ATCGGCGGAGGG TTGTTCCCGTCTTCG RHA1_ro00379 451812 - 450931 - | short chain dehydrogenase/reductase RHA1_ro00380 451881 - 452180 + | hypothetical protein RHA1_ro00381 453590 - 452241 - | aromatic acid transporter RHA1_ro00382 454867 - 453677 - | naphthalene 1,2-dioxygenase TERM 114 454522 - 454508 - G 72 -6.4 -4.26076 | opp_overlap 454508 GTAGCGGCACGAAAA GATTCG CTT CGAACC CTTCTCCTCGGGAAC RHA1_ro00383 456361 - 454913 - | betaine-aldehyde dehydrogenase TERM 115 456408 - 456397 - R 70 -5.8 -4.28254 | overlap 456398 CTCGAACACCGAAAA GCAC TACA GTGC AGCGACTCCAGACTC RHA1_ro00384 457084 - 456425 - | tetracycline repressor protein RHA1_ro00385 457620 - 457084 - | nitrilotriacetate monooxygenase component B RHA1_ro00386 457946 - 457632 - | hypothetical protein RHA1_ro00387 458490 - 457930 - | hypothetical protein RHA1_ro00388 458969 - 458487 - | hypothetical protein RHA1_ro00389 460164 - 458989 - | nonspecific lipid-transfer protein RHA1_ro00390 460643 - 460161 - | hypothetical protein TERM 116 460352 - 460313 - G 70 -12.8 -3.29471 | gap 1, overlap 460316 CGGCGAGTAGACCAA GCACTCGTCG-TCCCCCGG CAT CCGGGAGTTCGACGAGAAC CGTGACGAACGGCAA TERM 117 460349 - 460316 - G 70 -15.3 -2.82519 | gap 1, overlap 460313 CGAGTAGACCAAGCA CTCGTCG-TCCCCCGG CAT CCGGGAGTTCGACGAG AACCGTGACGAACGG RHA1_ro00391 461539 - 460718 - | carveol dehydrogenase RHA1_ro00392 462812 - 461589 - | monooxygenase RHA1_ro00393 463274 - 464512 + | cytochrome P450 CYP254 TERM 118 464584 - 464550 - T 93 -19.5 -3.02043 | gap 1, opp_overlap 464553 464556, overlap 464553 464556 AACGCCGTCCGAACA GTAGAAGGTCCCCGGA GAAA TCCGGGGACCTTCT-C TGCTGTGTCACACCG TERM 119 464553 - 464582 + T 100 -22.3 -2.88999 | opp_overlap 464550 464553 464556, overlap 464556 GCCGTCCGAACAGTA GAAGGTCCCCGGA GAAA TCCGGGGACCTTC TCTGCTGTGTCACAC TERM 120 464582 - 464553 - T 100 -22.3 -2.73875 | opp_overlap 464553 464556, overlap 464550 464556 GCCGTCCGAACAGTA GAAGGTCCCCGGA GAAA TCCGGGGACCTTC TCTGCTGTGTCACAC TERM 121 464579 - 464556 - T 93 -18.2 -3.52073 | opp_overlap 464553 464556, overlap 464553 464550 GTCCGAACAGTAGAA GGTCCCCGGA GAAA TCCGGGGACC TTCTCTGCTGTGTCA TERM 122 464556 - 464579 + T 93 -18.2 -3.59109 | opp_overlap 464556 464553 464550, overlap 464553 GTCCGAACAGTAGAA GGTCCCCGGA GAAA TCCGGGGACC TTCTCTGCTGTGTCA RHA1_ro00394 467018 - 464592 - | formyl-coenzyme A transferase RHA1_ro00395 468533 - 467061 - | aldehyde dehydrogenase TERM 123 468385 - 468419 + g 70 -15 -2.75382 | overlap 468382 468396 ATGTCGGCTTCGGAC GCCATCGCGGAGGTGC CCA GTACCTTCTCGGTGGC TGCTTCGATGACATC RHA1_ro00396 469752 - 468559 - | nonspecific lipid-transfer protein RHA1_ro00397 470201 - 469749 - | hypothetical protein RHA1_ro00398 470515 - 470198 - | hypothetical protein RHA1_ro00399 472100 - 470601 - | acetyl-CoA acetyltransferase RHA1_ro00400 473134 - 472097 - | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro00401 473998 - 473183 - | enoyl-CoA hydratase RHA1_ro00402 474100 - 474927 + | short chain dehydrogenase RHA1_ro00403 475015 - 476376 + | major facilitator transporter TERM 124 476397 - 476425 + T 100 -24.7 -3.66178 | opp_overlap 476385 GCACCACTCGAGGTA CGGGCTCCGATCC ACC GGATCGGAGCCCG TTTCGCATTCCGGGA TERM 125 476454 - 476504 + T 100 -21.3 -3.03124 | gap 2, opp_overlap 476446 476460 476464, overlap 476456 GAGGGAATGGGCGGA CAGCAAGAAACCGCCCACCGGACTG GCT CAG-CCGGTGGGCGGTCTCA-GCTG TATTCGACGGTCACA TERM 126 476456 - 476502 + T 89 -18.1 -3.07344 | gap 2, opp_overlap 476446 476460 476464, overlap 476454 GGGAATGGGCGGACA GCAAGAAACCGCCCACCGGACTG GCT CAG-CCGGTGGGCGGTCTCA-GC TGTATTCGACGGTCA TERM 127 476499 - 476460 - T 100 -25.2 -3.25942 | gap 1, opp_overlap 476456 476454, overlap 476446 476464 ATGGGCGGACAGCAA GAAACCGCCCACCGGACTG GCT CAG-CCGGTGGGCGGTCTC AGCTGTATTCGACGG TERM 128 476495 - 476464 - T 100 -22.4 -4.29106 | gap 1, opp_overlap 476456 476454, overlap 476446 476460 GCGGACAGCAAGAAA CCGCCCACCGGACTG GCT CAG-CCGGTGGGCGG TCTCAGCTGTATTCG RHA1_ro00404 477255 - 476515 - | 3-oxoacyl-[acyl-carrier protein] reductase RHA1_ro00405 478786 - 477263 - | AMP-dependent acyl-CoA synthetase RHA1_ro00406 480220 - 478913 - | ferredoxin--NADP(+) reductase RHA1_ro00407 481830 - 480544 - | bifunctional 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase RHA1_ro00408 482103 - 483272 + | ring hydroxylating diooxygenase RHA1_ro00409 483323 - 484474 + | acyl-CoA dehydrogenase TERM 129 484487 - 484534 + F 93 -18.5 -3.30771 | opp_overlap 484495, overlap 484488 484490 TGATCGAATCCGGGC AGACGAAACGGGTGCGGCTGA CGATTC TCGGCCGCACTCGTCTCGTCG TTCTCACCCCTGTCG TERM 130 484488 - 484533 + F 100 -22 -2.58249 | opp_overlap 484495, overlap 484487 484490 GATCGAATCCGGGCA GACGAAACGGGTGCGGCTGA CGATTC TCGGCCGCACTCGTCTCGTC GTTCTCACCCCTGTC TERM 131 484490 - 484531 + F 89 -18.8 -2.8294 | opp_overlap 484495, overlap 484488 484487 TCGAATCCGGGCAGA CGAAACGGGTGCGGCTGA CGATTC TCGGCCGCACTCGTCTCG TCGTTCTCACCCCTG TERM 132 484526 - 484495 - f 79 -11.5 -3.83026 | opp_overlap 484490 484488 484487 TCCGGGCAGACGAAA CGGGTGCGGCTGA CGATTC TCGGCCGCACTCG TCTCGTCGTTCTCAC RHA1_ro00410 484841 - 485302 + | secreted lipase RHA1_ro00411 487461 - 485278 - | formate dehydrogenase RHA1_ro00412 489086 - 487458 - | ferredoxin--NADP(+) reductase RHA1_ro00413 491323 - 489086 - | formate dehydrogenase RHA1_ro00414 493452 - 491320 - | molybdopterin oxidoreductase TERM 133 492027 - 492001 - G 71 -10 -3.72324 | overlap 492020 GAGGTCGAGGAAGAA CCGCCAGTCGTC GAC GACACCGGGCGG CGCCGGCAGCACAGC RHA1_ro00415 494863 - 493457 - | 4-hydroxybenzoate transporter RHA1_ro00416 496493 - 494952 - | AMP-dependent acyl-CoA synthetase TERM 134 496664 - 496631 - R 100 -17.6 -4.25283 | opp_overlap 496631 ACTGTCGCACGAAAA CGACACCCACACAA TATATT TCGTGTGGGTGTCG TTCTCCTGTGGGATG TERM 135 496631 - 496664 + r 90 -15.4 -3.47078 | opp_overlap 496631 ACTGTCGCACGAAAA CGACACCCACACAA TATATT TCGTGTGGGTGTCG TTCTCCTGTGGGATG TERM 136 496702 - 496718 + r 70 -11.5 -3.33492 | overlap 496693 TCAGCCGGCGGGCGG CGCCTCG TGT CGGGGCG TTCTCGGGTCGATCG RHA1_ro00417 497937 - 496687 - | formyl-coenzyme A transferase RHA1_ro00418 498656 - 497934 - | hypothetical protein RHA1_ro00419 499414 - 498653 - | enoyl-CoA hydratase RHA1_ro00420 500673 - 499411 - | ring hydroxylating dioxygenase alpha subunit RHA1_ro00421 500664 - 501266 + | TetR family transcriptional regulator RHA1_ro00422 501902 - 501300 - | TetR family transcriptional regulator TERM 137 502075 - 502021 - R 100 -24.5 -3.43071 | gap 1 CCCTACACCAATGAA CGAGGCAGGTGTCCGA-GGTCCCACA TTCC CACGGGACCATCGGACATCTGCCTCG AATCTCCGCCCCGGA RHA1_ro00423 503321 - 502092 - | cytochrome P450 CYP254 TERM 138 502643 - 502602 - G 70 -9.4 -3.86981 | opp_overlap 502640, overlap 502604 502605 GAGCAGAAGGAAGAA CATGCGGTACAGCTCCTC GTCGGT GAGGAGCCGTACCCCGTC CCCCATCTCGATCGG TERM 139 502641 - 502604 - G 73 -12 -3.51235 | opp_overlap 502640, overlap 502602 502605 GCAGAAGGAAGAACA TGCGGTACAGCTCCTC GTCGGT GAGGAGCCGTACCCCG TCCCCCATCTCGATC TERM 140 502640 - 502605 - G 70 -15.5 -2.70018 | overlap 502604 502602 CAGAAGGAAGAACAT GCGGTACAGCTCCTC GTCGGT GAGGAGCCGTACCCC GTCCCCCATCTCGAT RHA1_ro00424 503561 - 503328 - | ferredoxin FdxD RHA1_ro00425 503837 - 503577 - | short-chained dehydrogenase FabG RHA1_ro00426 504445 - 503837 - | short-chain type dehydrogenase/reductase, N-terminal RHA1_ro00427 505221 - 504871 - | hypothetical protein RHA1_ro00428 505501 - 505223 - | hypothetical protein RHA1_ro00429 506724 - 505711 - | AsnC family transcriptional regulator TERM 141 506290 - 506252 - G 74 -14.6 -3.01712 | CGGGGGCCGGGAACA CGGGCGGCCTGCGC-CGC GGACA GCGTGCGCAG-CCGCCAG TTCCCCGCCTCGAAC RHA1_ro00430 506827 - 508293 + | major facilitator superfamily multidrug resistance protein RHA1_ro00431 508329 - 509762 + | amidohydrolase RHA1_ro00432 509795 - 511036 + | metal dependent amidohydrolase RHA1_ro00433 515105 - 511041 - | non-ribosomal peptide synthetase TERM 142 515117 - 515103 - G 75 -10 -4.09685 | opp_overlap 515103 515105 CGCCATGCGCGAAAA CACACC CTA GGTGTG TGGTGTGGACACCCT RHA1_ro00434 515235 - 516197 + | NADPH:quinone reductase RHA1_ro00435 516273 - 516647 + | hypothetical protein RHA1_ro00436 517340 - 516735 - | hypothetical protein RHA1_ro00437 517599 - 518549 + | metal-dependent hydrolase RHA1_ro00438 518549 - 519709 + | hypothetical protein TERM 143 519745 - 519790 + T 77 -14.9 -2.79796 | gap 2 GATTGGCCAACGCGG CCCCA-CCCGTGATCTG-GCG GTGATG CGCGCAGATCACGGGCTGGGA TGTCGTGACCTACAA katA 521257 - 519800 - | catalase TERM 144 520547 - 520570 + g 74 -11.6 -3.73647 | CTGCGCCGACTCGCG GTCGCCGGCG ACGA CGGCGGCGGC TTCTTCGTCGGTGAG RHA1_ro00440 523155 - 521371 - | transcriptional regulator RHA1_ro00441 523358 - 524992 + | propane monooxygenase hydroxylase large subunit RHA1_ro00442 525008 - 526120 + | phenol hydroxylase RHA1_ro00443 526171 - 527277 + | monooxygenase hydroxylase RHA1_ro00444 527274 - 527615 + | monooxygenase component TERM 145 527661 - 527617 - f 87 -17.8 -2.80443 | overlap 527640 TCACAGCGCAGTAGA CCGCAGCCGTCCGGGGCCAC ACAGG GTGGCCCCGGACACCCCCAG CCCACCCGAAAACCA TERM 146 528322 - 528357 + G 82 -14.8 -3.4252 | gap 1 CTGGACCTGCGGTTC GTCGTCGAGCACGTGGG CCT TCCACG-GCTCGAGGAC TTCTGCTGGATCGCC RHA1_ro00445 527695 - 528741 + | hypothetical protein RHA1_ro00446 528738 - 529481 + | hypothetical protein RHA1_ro00447 529478 - 530503 + | alcohol dehydrogenase groEL 530550 - 532199 + | chaperonin GroEL TERM 147 532253 - 532205 - f 91 -17.3 -3.29947 | opp_overlap 532244 CATCTACTAGAGCAA GCCCGTGGGTCACCGCCTCGACG GTC CTGCGAGGCGGTGACCCACTCCC CCGTTCCGGCGGGGA RHA1_ro00449 532298 - 532624 + | hypothetical protein RHA1_ro00450 532675 - 534045 + | glycolate oxidase FAD-linked subunit RHA1_ro00451 534042 - 534362 + | hypothetical protein RHA1_ro00452 534465 - 536213 + | transcriptional regulator RHA1_ro00453 536374 - 536619 + | hypothetical protein RHA1_ro00454 537286 - 536990 - | polyketide synthesis monooxygenase TERM 148 537461 - 537510 + G 93 -18.5 -3.45023 | TCGCAACCGCCTGAT GCGCCGCGGCGACCGATACGAGG CCGT CCTCGTGCTGCTCGCCGCGATGC TTATACTGCTGCTGG RHA1_ro00455 537381 - 537989 + | hypothetical protein RHA1_ro00456 538935 - 538003 - | hydroxylase TERM 149 539064 - 539047 - H 70 -4.8 -4.41348 | GCCGGCGCAAACAAA CAGACG GATGTG CGCCTG CGCAGGCACACCGGA RHA1_ro00457 539185 - 539715 + | hypothetical protein RHA1_ro00458 539907 - 540425 + | dehydrogenase RHA1_ro00459 540993 - 540727 - | hypothetical protein TERM 150 540837 - 540785 - G 72 -15.4 -2.89742 | gap 1 GGCAACGCCCAGATA GCGGTTTCCAGGTCCCACGCGGGCC CCCG GGCCAGCG-GGGACCGGTTCACCGC GACCAGATCATCCGC RHA1_ro00460 541525 - 542418 + | hypothetical protein RHA1_ro00461 542483 - 543010 + | hypothetical protein RHA1_ro00462 545045 - 543540 - | transposase RHA1_ro00463 547001 - 545082 - | hypothetical protein RHA1_ro00464 548067 - 547015 - | tyrosine recombinase RHA1_ro00465 548618 - 548163 - | transposase RHA1_ro00466 548869 - 548612 - | transposase RHA1_ro00467 550076 - 549051 - | hypothetical protein RHA1_ro00468 550634 - 550137 - | hypothetical protein RHA1_ro00469 550897 - 550631 - | hypothetical protein RHA1_ro00470 551874 - 550894 - | phthalate 4,5-dioxygenase RHA1_ro00471 552170 - 551871 - | hypothetical protein RHA1_ro00472 552677 - 552282 - | ethanolamine utilization protein EutQ RHA1_ro00473 552762 - 553514 + | hypothetical protein RHA1_ro00474 555355 - 553601 - | phthalate 4,5-dioxygenase RHA1_ro00475 556806 - 555571 - | hypothetical protein RHA1_ro00476 557048 - 556803 - | hypothetical protein RHA1_ro00477 557701 - 557045 - | glyoxalase RHA1_ro00478 558627 - 557713 - | maleate cis-trans isomerase TERM 151 559088 - 559077 - g 70 -4.4 -4.4727 | GGAACAGTTACAAAA TGTC ATGG GACA GAGCAAATCTCATGG TERM 152 559513 - 559491 - g 70 -12.7 -3.2794 | gap 1 GGTGATGCAGAGCAA CGGCGGC-GC CGTC GCAGCCGCCG AGGCACCGAAGAACG TERM 153 559559 - 559527 - g 78 -12.1 -3.68569 | gap 1, overlap 559528 CGAGGCACCGAAGAA CGCGATCAGCACCG TCGGAT CGGTGCTGACCG-G TGGCGTGGTCGGTGC TERM 154 560084 - 560057 - g 72 -8.3 -4.07687 | opp_overlap 560062, overlap 560028 ACCTGCTGCGCAAAA CGGTGGTCGAG GCGGGA CACGACCCCCG CGACTTCGTGCTCTA hyuA 558730 - 560832 + | hydantoin utilization protein A hyuB 560844 - 563168 + | hydantoin utilization protein B RHA1_ro00481 563212 - 564927 + | 2,3-dihydroxybenzoate-AMP ligase TERM 155 564992 - 564953 - f 100 -26.6 -3.14132 | TCCGTTCTGGATCAA CGTCTTCGGGGCATGTCC ACAC GGGCATGCCCCGAAGACG ATCACTCTCCGCACG RHA1_ro00482 565091 - 566674 + | monooxygenase/ aromatic ring hydroxylase RHA1_ro00483 566671 - 567495 + | TetR family transcriptional regulator RHA1_ro00484 567961 - 567533 - | hypothetical protein RHA1_ro00485 568571 - 568128 - | hypothetical protein RHA1_ro00486 568553 - 568879 + | hypothetical protein RHA1_ro00487 570432 - 569140 - | LuxR family transcriptional regulator TERM 156 570520 - 570472 - H 89 -18.8 -3.09516 | gap 1, opp_overlap 570501 CCGGGTACGAGGCAA CGGCA-CTGGCCAAGCGGCCGGC CCGA ACCGGCCGACCGGCCGGGTGCCG CGGCGCACCGGAGTC RHA1_ro00488 570580 - 571161 + | 6-phospho-3-hexuloisomerase RHA1_ro00489 571198 - 571818 + | 3-hexulose-6-phosphate synthase TERM 157 571842 - 571881 + T 93 -17.4 -3.53091 | gap 1, overlap 571843 CACGCGATTGCTGAC G-GTGAAGGCCCTGAAC ACATCCA GTTCAGGGCCTTCACTC TTTCGCACCCCGGGT TERM 158 571843 - 571879 + T 100 -21.1 -3.34398 | overlap 571842 ACGCGATTGCTGACG GTGAAGGCCCTGAAC ACATCCA GTTCAGGGCCTTCAC TCTTTCGCACCCCGG RHA1_ro00490 572241 - 571876 - | hypothetical protein RHA1_ro00491 572304 - 572594 + | hypothetical protein TERM 159 573105 - 573076 - T 73 -12.1 -3.31263 | gap 1 ACCTCACGTCGAGAA CCGCCCCGAC-GCG GCG CGCTGTAGGGACGG GTGGGCGCGATGCGC RHA1_ro00492 574596 - 573199 - | malate dehydrogenase (oxaloacetate-decarboxylating) TERM 160 574825 - 574875 + H 87 -14.7 -3.59627 | gap 1, opp_overlap 574855, overlap 574830 574864 CGAAGCGGGGAGCCG TGCGGCGGCAACGTGCCCGGTC CGAAGTAA GCCCGGGCGCGTCGCCGT-GCA TTTGCGACGTTTAGT TERM 161 574830 - 574871 + H 81 -16.5 -2.64651 | opp_overlap 574855, overlap 574825 574864 CGGGGAGCCGTGCGG CGGCAACGTGCCCGGTC CGAAGTAA GCCCGGGCGCGTCGCCG TGCATTTGCGACGTT RHA1_ro00493 574938 - 575312 + | hypothetical protein RHA1_ro00494 575430 - 575678 + | hypothetical protein RHA1_ro00495 576155 - 575901 - | hypothetical protein RHA1_ro00496 576172 - 576450 + | hypothetical protein RHA1_ro00497 577022 - 576654 - | hypothetical protein TERM 162 576977 - 576993 + g 74 -13.7 -3.30243 | GTCCGCTTTGTATCT GCGCGAG CTG CTCGCGC TTGTCGAAGATGGGT RHA1_ro00498 577830 - 577477 - | hypothetical protein RHA1_ro00499 578540 - 578851 + | hypothetical protein RHA1_ro00500 578865 - 579317 + | hypothetical protein TERM 163 579529 - 579479 - f 80 -12.6 -3.72576 | gap 1, overlap 579503 579521 CTCCCGGCCAGCAAA CCGTGACCGTGGTGTGCGACAGC AGCGGA GCCGTCGCTCAA-ACGGTGACGG TCAGCTGACAGGTCT RHA1_ro00501 579668 - 579907 + | hypothetical protein RHA1_ro00502 580337 - 579924 - | transposase RHA1_ro00503 581146 - 580820 - | transposase TERM 164 581323 - 581287 - g 78 -10.2 -4.21908 | overlap 581288 581322 CACCATGAGCGAAAA TCCGGGTTCGCCAG-GCG GTC CGCACTGGC-AACCCAGC GGGCCTGAGTGGCAA TERM 165 581322 - 581288 - g 72 -13.7 -3.12663 | overlap 581287 ACCATGAGCGAAAAT CCGGGTTCGCCAG-GCG GTC CGCACTGGC-AACCCAG CGGGCCTGAGTGGCA RHA1_ro00504 581276 - 582679 + | hypothetical protein RHA1_ro00505 584561 - 582702 - | serine/threonine-protein kinase TERM 166 583234 - 583266 + g 77 -15.6 -3.14132 | gap 1, opp_overlap 583251 583253 AGCACCCGGTTGTTG CGTGTGTCGGCGACG AAGA CGTCGCCGGCGC-CG TTGGTCGCCACCCCC TERM 167 584784 - 584751 - H 72 -10.9 -3.50853 | gap 1, opp_overlap 584754 CTGCCTGAACCAGAA CTCGACGGC-CCCCGC CGG GCGGCGTGCCAGCGAG GGCCCGGCATTGTTC RHA1_ro00506 584926 - 585216 + | hypothetical protein RHA1_ro00507 585344 - 586147 + | hypothetical protein RHA1_ro00508 586384 - 586752 + | hypothetical protein RHA1_ro00509 588067 - 586934 - | EmbR family transcriptional regulator TERM 168 588802 - 588762 - g 70 -15.3 -2.78384 | GGGCCCGCCACGAGA CCCGCACGCTGACCGACCC GGC GGATCGGTCGGCGCGGTGG TCCTACCTCGGGGTG RHA1_ro00510 588251 - 589051 + | serine/threonine protein kinase RHA1_ro00511 589089 - 591329 + | hypothetical protein RHA1_ro00512 591919 - 591665 - | hypothetical protein RHA1_ro00513 592336 - 591932 - | dehydrogenase TERM 169 592028 - 592062 + g 82 -19.4 -2.87344 | opp_overlap 592022 592023, overlap 592032 GCGTAACAACCGTCG GGAACGGCACCCGG CCCCGCA CCGGGTGTCGTTCC TCTGTGCACGAGGTC TERM 170 592032 - 592058 + g 70 -13 -3.32022 | opp_overlap 592022 592023, overlap 592028 AACAACCGTCGGGAA CGGCACCCGG CCCCGCA CCGGGTGTCG TTCCTCTGTGCACGA RHA1_ro00514 592823 - 592440 - | short-chained dehydrogenase RHA1_ro00515 593866 - 592826 - | 4-hydroxy-2-ketovalerate aldolase TERM 171 593707 - 593756 + g 100 -17 -4.10161 | overlap 593727 CGCCGTGGGAGACCT CGATGGCGTCGACGCCGGCGCT GTCGAG GGCGCCGGCGATGACGGCGACG TTTTCGGGGGTGATG RHA1_ro00516 594810 - 593863 - | acetaldehyde dehydrogenase RHA1_ro00517 595629 - 594829 - | 2-oxopent-4-enoate hydratase RHA1_ro00518 596617 - 595673 - | 3-(2,3-dihydroxyphenyl)propionate dioxygenase ohpC 597607 - 596738 - | 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase ohpB 599514 - 597604 - | 3-(2-hydroxyphenyl) propionic acid monooxygenase TERM 172 599088 - 599104 + g 74 -10.8 -3.71848 | GGAAGCTGATGATCG CGCCGC GTTCG GCGGCG TTCTTGATCAGCACC RHA1_ro00521 600925 - 599519 - | major facilitator transporter TERM 173 600986 - 601008 + r 70 -7.6 -4.03234 | overlap 600989 TGGACCAACCTGCGC GAAGCGGTCG TCA TGGCCGCTCC TTTCTCTGAGGGAAG TERM 174 601229 - 601191 - R 100 -21.7 -4.52857 | opp_overlap 601198 AGTGGGCATAGAAAA GGCCCGCCCCGTGCAAC GTGTG GTTGCGGGGGGCGGGCC GCCGGTGGGGGCGTC ohpR 601970 - 601245 - | GntR family transcriptional regulator RHA1_ro00523 602335 - 603408 + | methylenetetrahydromethanopterin reductase RHA1_ro00524 603434 - 604057 + | isochorismatase hydrolase TERM 175 604122 - 604074 - f 100 -19.6 -3.77666 | gap 1, overlap 604075 CACACCGAACCGAAA CCGGCCGCACTGGTGTGGGCGCC CCGC GGCGCCCACACCAGCACT-CCGT GTGCCCGACATCCCG TERM 176 604121 - 604075 - f 100 -23.1 -2.86117 | gap 1, overlap 604074 ACACCGAACCGAAAC CGGCCGCACTGGTGTGGGCGCC CCGC GGCGCCCACACCAGCACT-CCG TGTGCCCGACATCCC RHA1_ro00525 604177 - 605286 + | Zn-containing alcohol dehydrogenase RHA1_ro00526 605314 - 605676 + | WhiB family transcriptional regulator RHA1_ro00527 605838 - 606404 + | serine/threonine-protein kinase RHA1_ro00528 606416 - 607354 + | transcriptional regulator RHA1_ro00529 607898 - 607518 - | hypothetical protein RHA1_ro00530 608610 - 607999 - | hypothetical protein RHA1_ro00531 609942 - 608779 - | pigment production hydroxylase RHA1_ro00532 610723 - 610082 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase RHA1_ro00533 611312 - 610815 - | nitrilotriacetate monooxygenase, component B TERM 177 611459 - 611486 + r 72 -3.4 -4.61873 | gap 1, overlap 611461 TTGCGTGGTTCGCAC TACTGC-ACAACC CAG GGTTGTCGCCGTC TTTTGGTTTCTAGAC RHA1_ro00534 612814 - 611537 - | hypothetical protein TERM 178 612387 - 612355 - G 85 -18.5 -3.04792 | opp_overlap 612365 CGAGCACCTCGAAGA GCAGCAGCGAGATGC GGC GCATCTCGTTGCCGC TCTCGCTCGGTGGAA RHA1_ro00535 613118 - 612795 - | hypothetical protein RHA1_ro00536 613121 - 613693 + | extradiol dioxygenase, type I TERM 179 613835 - 613845 + G 72 -8.2 -4.07568 | opp_overlap 613779, overlap 613829 ACGTCGAGACGGCCA GCGG GGG CCGC TTTTCCGCCGAACCC RHA1_ro00537 613762 - 614652 + | fumarylacetoacetate hydrolase RHA1_ro00538 614645 - 616411 + | aromatic ring hydroxylase TERM 180 616477 - 616426 - f 100 -20.8 -3.16683 | gap 1, overlap 616456 ACCCCACCGCACGAA CGCTC-CCGCCACGGGCAGACCAGG ACA CCACGTCTGCCCGTGGCGGCGGGAG CCGGAAAGGACGCAC RHA1_ro00539 616498 - 618498 + | acetoacetyl-CoA synthetase RHA1_ro00540 619266 - 618568 - | GntR family transcriptional regulator TERM 181 618632 - 618645 + g 81 -8.1 -4.55023 | overlap 618626 TCGAGGTGCTGCCGT GTCGC CGCG GCGAC TTTTCTCATGTTGCG RHA1_ro00541 619835 - 619359 - | AsnC family transcriptional regulator TERM 182 621326 - 621278 - g 85 -17.4 -3.14132 | gap 2 GCGGTGCGCGAGCAA CGCG-GAGCG-GCTGCGCCGGAAC CCT GTCCCGGCGCTGCCCGCGCTCACG ATCCCCACCGACATC RHA1_ro00542 620109 - 622460 + | pyruvate dehydrogenase E1 component TERM 183 622617 - 622597 - g 77 -11.1 -3.90744 | CGGTGGCTCAAACAA CCCGGTGAC CAC GTCACCGCG GAGGAACCACTGCTC RHA1_ro00543 622504 - 623607 + | dihydrolipoyllysine-residue succinyltransferase RHA1_ro00544 623649 - 623900 + | hypothetical protein RHA1_ro00545 624194 - 623955 - | hypothetical protein RHA1_ro00547 627743 - 627351 - | WhiB family transcriptional regulator RHA1_ro00548 627985 - 627749 - | hypothetical protein RHA1_ro00549 628388 - 628083 - | epoxide hydrolase RHA1_ro00550 628681 - 628983 + | long-chain-acyl-CoA dehydrogenase RHA1_ro00551 629099 - 629725 + | hypothetical protein RHA1_ro00552 629741 - 630037 + | hypothetical protein RHA1_ro00553 630176 - 630385 + | hypothetical protein RHA1_ro00554 630442 - 630909 + | hypothetical protein TERM 184 630963 - 630910 - T 71 -12.1 -3.2661 | overlap 630914 GCAAACAACACCTAA CCCAGAGGGCGCCGTCGAGCACCGC AACC ACGGCGCCCGGCGGCGCCACCATGT CCGACAGTCCGTAGC TERM 185 630959 - 630914 - T 91 -20.3 -2.57335 | overlap 630910 ACAACACCTAACCCA GAGGGCGCCGTCGAGCACCGC AACC ACGGCGCCCGGCGGCGCCACC ATGTCCGACAGTCCG TERM 186 631030 - 631069 + T 74 -12.8 -3.21276 | overlap 631005 631028 CCCACTGTCACGGTG GCGACGAGGGCGGTGTCT TCGC AGACGATGTCCTCGCCGC TGTTCTGCGCCCCCG zwf1 633057 - 631483 - | glucose-6-phosphate 1-dehydrogenase TERM 187 631964 - 631942 - G 74 -11.2 -3.71848 | opp_overlap 631939 631955, overlap 631943 GGTGCGGATGAAGAA CGGCACGCCG GTC CGCCGTGCCA GGCGTTTGCCGGTGC TERM 188 632015 - 631990 - G 74 -11.7 -3.71848 | GGTGCGGATGAAGAA CGGCACGCCGG CCCA CCGGCGAGTCG CGATGCCGACTGTCA gnd1 633274 - 634173 + | 6-phosphogluconate dehydrogenase-like protein RHA1_ro00557 634459 - 634208 - | transcriptional regulator RHA1_ro00558 634539 - 634438 - | hypothetical protein RHA1_ro00559 635028 - 634621 - | transcriptional regulator RHA1_ro00560 635069 - 635845 + | hypothetical protein RHA1_ro00561 636861 - 635995 - | DNA binding protein RHA1_ro00562 637047 - 638516 + | hydrolase RHA1_ro00563 638735 - 639160 + | nitroreductase TERM 189 639225 - 639242 + F 76 -9.1 -4.1552 | ATAGATTCTCCGCAT GCGGAGT GAAC GCTCCGC TTTGTTGGGAGAATC RHA1_ro00564 639259 - 640734 + | major facilitator superfamily multidrug resistance protein RHA1_ro00565 640743 - 641375 + | TetR family transcriptional regulator RHA1_ro00566 641801 - 641400 - | hypothetical protein RHA1_ro00567 642697 - 641813 - | 2,5-didehydrogluconate reductase RHA1_ro00568 644187 - 642781 - | multidrug ABC transporter TERM 190 643581 - 643608 + g 70 -12 -3.34398 | opp_overlap 643577, overlap 643579 643582 CACCGAGAGCACCGA TCACGTCGAACC TTCC GGTTCGCCGTGG TGTTTCGACGAGCAC RHA1_ro00569 645233 - 644184 - | alcohol dehydrogenase RHA1_ro00570 645335 - 646234 + | DNA binding protein RHA1_ro00571 647130 - 646315 - | hypothetical protein RHA1_ro00572 647998 - 647255 - | repressor LexA TERM 191 647480 - 647452 - G 73 -13.1 -3.40403 | GGCGGCGCACCACAA CGACGTCGCCATC GCA GATCGCGGCGTCG ATCATCGACTCACCG dghA 649600 - 648311 - | glutamate dehydrogenase (NAD(P)+) TERM 192 649076 - 649035 - G 79 -7.1 -4.46212 | gap 1, opp_overlap 649012, overlap 649020 649036 TCGCCCAGCAGAAAA CCGCTGGGCACGGG-GGCGT TCA ATGCTGCCCGTACCCGGCGT AGAGTCCTCTGCGGA RHA1_ro00574 649787 - 650710 + | LysR family transcriptional regulator RHA1_ro00575 651473 - 650736 - | monooxygenase RHA1_ro00576 651475 - 652251 + | hydroxylase RHA1_ro00577 652303 - 653847 + | hypothetical protein RHA1_ro00578 654351 - 654010 - | hypothetical protein RHA1_ro00579 654869 - 655282 + | hypothetical protein RHA1_ro00580 655453 - 655719 + | hypothetical protein TERM 193 655768 - 655791 + F 70 -8 -4.06419 | overlap 655769 655781 ATCCGGGACCTTCGG CCTCGCGCGG TCGT CCGCGCGACC TTGTTTCTGGAGACG RHA1_ro00581 655901 - 656818 + | oxidoreductase, Zn-binding RHA1_ro00582 657037 - 657480 + | hypothetical protein RHA1_ro00583 658825 - 657533 - | hypothetical protein RHA1_ro00584 660590 - 658944 - | proteinase RHA1_ro00585 660860 - 661231 + | dihydrolipoamide acyltransferases RHA1_ro00586 661734 - 661312 - | hypothetical protein RHA1_ro00587 661961 - 663304 + | succinate-semialdehyde dehydrogenase (NAD(P)(+)) TERM 194 663418 - 663386 - T 100 -25.7 -3.48593 | CATCCGGCGACAGAA GTGGGGACCGCACCC ACC GGATGCGGTCCCCAC GTTGCGCTGGTCAGA RHA1_ro00588 663632 - 663429 - | cold shock protein TERM 195 663733 - 663745 + r 72 -3.3 -4.65895 | overlap 663728 CGAAGAACCGGTCGC CTTCG GGT CGACG TTTTTGCATACACCG RHA1_ro00589 664196 - 663789 - | methyltransferase RHA1_ro00590 664672 - 664193 - | methyltransferase RHA1_ro00591 664696 - 665835 + | aldo/keto reductase TERM 196 665836 - 665882 + T 77 -12.9 -3.34517 | opp_overlap 665839 665840 665842, overlap 665836 665838 665840 GGACTCAGGCTCTGA CAACCACTCACCCGCTCGCGC CGACA GCGCGGGCGGGTGACTGTCTC TGTTTGCACAAAGCT TERM 197 665836 - 665884 + T 72 -11.1 -3.53563 | gap 2, opp_overlap 665839 665840 665842, overlap 665836 665838 665840 GGACTCAGGCTCTGA CA-A-CCACTCACCCGCTCGCGC CGACA GCGCGGGCGGGTGACTGTCTCTG TTTGCACAAAGCTGT TERM 198 665838 - 665880 + T 86 -15.5 -3.24232 | opp_overlap 665839 665840 665842, overlap 665836 665836 665840 ACTCAGGCTCTGACA ACCACTCACCCGCTCGCGC CGACA GCGCGGGCGGGTGACTGTC TCTGTTTGCACAAAG TERM 199 665879 - 665839 - T 91 -17.5 -3.29511 | opp_overlap 665838 665836 665836 665840, overlap 665840 665842 CTCAGGCTCTGACAA CCACTCACCCGCTCGCGCC GAC AGCGCGGGCGGGTGACTGT CTCTGTTTGCACAAA TERM 200 665878 - 665840 - T 100 -21 -2.57564 | opp_overlap 665840 665838 665836 665836, overlap 665839 665842 TCAGGCTCTGACAAC CACTCACCCGCTCGCGCC GAC AGCGCGGGCGGGTGACTG TCTCTGTTTGCACAA TERM 201 665840 - 665878 + T 100 -22.5 -3.18571 | opp_overlap 665839 665840 665842, overlap 665838 665836 665836 TCAGGCTCTGACAAC CACTCACCCGCTCGCGC CGACA GCGCGGGCGGGTGACTG TCTCTGTTTGCACAA TERM 202 665876 - 665842 - T 87 -17.8 -2.82742 | opp_overlap 665840 665838 665836 665836, overlap 665840 665839 AGGCTCTGACAACCA CTCACCCGCTCGCGCC GAC AGCGCGGGCGGGTGAC TGTCTCTGTTTGCAC RHA1_ro00592 666995 - 665931 - | alkanesulfonate monooxygenase RHA1_ro00593 667534 - 668043 + | acetyltransferase RHA1_ro00594 669470 - 668058 - | cystathionine beta-synthase RHA1_ro00595 669688 - 669963 + | WhiB family transcriptional regulator RHA1_ro00596 670998 - 670144 - | GntR family transcriptional regulator RHA1_ro00597 671033 - 672304 + | cytosine deaminase TERM 203 672362 - 672390 + G 83 -4.6 -4.81852 | gap 2, opp_overlap 672341 672344 672343, overlap 672346 672366 CGACGGCCGGCTCGC CGCCGGTCGAATCG GTA CG-TTCGACCT-CG TTTTCTTCGTTGTCG RHA1_ro00598 672294 - 673781 + | amino acid transporter RHA1_ro00599 673778 - 674986 + | cytosine deaminase RHA1_ro00600 675679 - 675011 - | anti-sigma factor TERM 204 675373 - 675350 - G 74 -11.6 -3.71848 | overlap 675351 CCCGCGCAGGAAGAA CCCGCCGGCC ACCA GGCCGACGGC GATCACGACGGCCGC TERM 205 675372 - 675351 - G 72 -15.1 -2.82895 | overlap 675350 CCGCGCAGGAAGAAC CCGCCGGCC ACCA GGCCGACGG CGATCACGACGGCCG RHA1_ro00601 676208 - 675666 - | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro00602 676432 - 676890 + | lipoprotein RHA1_ro00603 676883 - 677986 + | catalase RHA1_ro00604 677976 - 678599 + | cytochrome B561 TERM 206 678726 - 678773 + T 90 -17.1 -3.38218 | opp_overlap 678729, overlap 678727 678729 CGGGACTTGCCCCAG ACAGGGGTTCGGCCGGGAATG CTCTCA CATTCTCGGCCGGATCTCTGC TTCTCGAGTGTTTCA TERM 207 678727 - 678772 + T 91 -20.6 -2.62449 | opp_overlap 678729, overlap 678726 678729 GGGACTTGCCCCAGA CAGGGGTTCGGCCGGGAATG CTCTCA CATTCTCGGCCGGATCTCTG CTTCTCGAGTGTTTC TERM 208 678729 - 678770 + T 87 -17.4 -2.84566 | opp_overlap 678729, overlap 678727 678726 GACTTGCCCCAGACA GGGGTTCGGCCGGGAATG CTCTCA CATTCTCGGCCGGATCTC TGCTTCTCGAGTGTT RHA1_ro00605 679692 - 678895 - | hypothetical protein RHA1_ro00606 679751 - 680044 + | hypothetical protein RHA1_ro00607 680322 - 680453 + | hypothetical protein RHA1_ro00608 682463 - 680658 - | transposase TERM 209 680844 - 680878 + g 76 -2.7 -4.77165 | gap 1, overlap 680846 CGGCAGGCTGTGGCG GACCCG-GCGGTGTCG CGGC CGACGCGGTGTGGGAC TTTTCTTGTGGCGGC TERM 210 681558 - 681529 - G 71 -10.7 -3.59979 | opp_overlap 681529 681529, overlap 681550 TCGTCGTACGTGAAA CCCCGATAGTCCG AGAC CAGACCATCCGGG GTTTCGGTGGCGACG dadA1 682850 - 683230 + | D-amino acid dehydrogenase small chain subunit RHA1_ro00610 683327 - 684031 + | hypothetical protein RHA1_ro00611 684213 - 684620 + | hypothetical protein RHA1_ro00612 684808 - 685443 + | hypothetical protein dapA1 686440 - 685502 - | dihydrodipicolinate synthase RHA1_ro00614 686859 - 686611 - | hypothetical protein RHA1_ro00615 686897 - 687430 + | hypothetical protein RHA1_ro00616 687560 - 687817 + | ATP-dependent Clp protease ATP-binding subunit RHA1_ro00617 688181 - 688813 + | hypothetical protein RHA1_ro00618 691134 - 688894 - | isocitrate dehydrogenase (NADP+) RHA1_ro00619 692313 - 691441 - | alkanesulfonate monooxygenase RHA1_ro00620 692773 - 692342 - | hypothetical protein RHA1_ro00621 692801 - 693259 + | hypothetical protein RHA1_ro00622 693353 - 693880 + | hypothetical protein TERM 211 694032 - 693982 - T 78 -16 -2.74523 | overlap 693979 693984 694026 GGATCGGGAACAGCA GAGCGCTTCGCTCGCATCACCGCC GTG GGCGGTGCCGCAATCGATGCGGCC GAGTCGCATCCGAGG TERM 212 694030 - 693984 - T 79 -15 -2.91728 | overlap 693982 693979 694026 ATCGGGAACAGCAGA GCGCTTCGCTCGCATCACCGCC GTG GGCGGTGCCGCAATCGATGCGG CCGAGTCGCATCCGA RHA1_ro00623 696333 - 694267 - | integral membrane protein TERM 213 696319 - 696302 - G 72 -5.5 -4.39426 | GAGACCGCGAGAAAA CGGACAG TCTC CTGTACG AACCGAAAAGCCATT RHA1_ro00624 696872 - 696627 - | hypothetical protein RHA1_ro00625 697634 - 697257 - | DNA binding protein RHA1_ro00626 697723 - 697866 + | hypothetical protein RHA1_ro00627 697872 - 698246 + | hypothetical protein RHA1_ro00628 698293 - 698472 + | hypothetical protein RHA1_ro00629 699242 - 698499 - | cutinase RHA1_ro00630 699734 - 700024 + | hypothetical protein RHA1_ro00631 700729 - 700112 - | hypothetical protein RHA1_ro00632 701250 - 700726 - | hypothetical protein RHA1_ro00633 701611 - 702630 + | NADPH:quinone reductase RHA1_ro00634 702749 - 703084 + | hypothetical protein RHA1_ro00635 703293 - 703589 + | hypothetical protein RHA1_ro00636 703728 - 703937 + | hypothetical protein RHA1_ro00637 703997 - 704464 + | hypothetical protein RHA1_ro00638 705338 - 704784 - | hypothetical protein RHA1_ro00639 706310 - 705594 - | hypothetical protein RHA1_ro00640 706301 - 706549 + | hypothetical protein RHA1_ro00641 707202 - 706603 - | hypothetical protein TERM 214 706989 - 707015 + g 80 -16.6 -3.18023 | opp_overlap 706965, overlap 706988 ATCGGCGGTCGCCCG TGAAGCCGGCGA TCG TCGCCGGCATCA TCTTGCTGGTCGTGG TERM 215 707678 - 707658 - g 70 -8.9 -3.94877 | overlap 707660 ATCGTCGAAGAAGAA CACCGGGCC GGC GACCCGGCA CATCGACGACCTCGT TERM 216 707676 - 707660 - g 71 -11.5 -3.56318 | overlap 707658 CGTCGAAGAAGAACA CCGGGCC GGC GACCCGG CACATCGACGACCTC RHA1_ro00642 707353 - 707952 + | hypothetical protein RHA1_ro00644 708988 - 708479 - | hypothetical protein RHA1_ro00643 708066 - 708575 + | hypothetical protein TERM 217 709613 - 709632 + FH 75 -9.2 -3.95073 | opp_overlap 709612 709611 AAGATCACTAATACG CCGCTCGT CACT ACGCGCGG TTTGTCCGTGTAGCG RHA1_ro00645 709918 - 710865 + | hypothetical protein RHA1_ro00646 710961 - 712010 + | aldehyde dehydrogenase (NAD+) RHA1_ro00647 713190 - 712342 - | serine protease RHA1_ro00648 714030 - 713425 - | hypothetical protein TERM 218 713739 - 713709 - G 77 -11.1 -3.87869 | gap 1, overlap 713711 713712 CCAACCCCGCAGAAA CACCG-ACCCCGCG TGAC CGCGGGGTACGAGG CCGACCACTCACCGG TERM 219 713737 - 713711 - G 73 -12.3 -3.52678 | gap 1, overlap 713709 713712 AACCCCGCAGAAACA CCG-ACCCCGCG TGAC CGCGGGGTACGA GGCCGACCACTCACC RHA1_ro00649 714181 - 715173 + | potassium channel RHA1_ro00650 715225 - 715980 + | ZIP family metal transporter RHA1_ro00651 716421 - 716182 - | hypothetical protein RHA1_ro00652 718464 - 716491 - | KUP family potassium uptake protein RHA1_ro00653 719247 - 718900 - | hypothetical protein TERM 220 719398 - 719409 + H 93 -3 -5.33405 | opp_overlap 719398 ATCCCCACCAAAACA TTCT CGGG AGAA TTTTTCTTTAGTGGC RHA1_ro00654 719567 - 720028 + | plastoquinol--plastocyanin reductase RHA1_ro00655 720649 - 720284 - | hypothetical protein RHA1_ro00656 721909 - 720857 - | dehydrogenase RHA1_ro00657 721968 - 722315 + | hypothetical protein gabD1 722358 - 723776 + | succinate-semialdehyde dehydrogenase (NAD(P)+) RHA1_ro00659 723821 - 724291 + | WhiE protein RHA1_ro00660 724331 - 724648 + | hypothetical protein RHA1_ro00661 724645 - 725841 + | 3-carboxymuconate cyclase RHA1_ro00662 725888 - 726721 + | citrate (pro-3S)-lyase TERM 221 726776 - 726822 + T 93 -19.4 -2.93382 | CGTTGCGGACCTTCC CGCAGCGTGCCGTCCGCGCC ACCTCCA GGTGCGGGCGGCACACTGCC TCTCTCGGTCTCGGG RHA1_ro00663 727613 - 727209 - | universal stress protein RHA1_ro00664 729040 - 727628 - | magnesium citrate transporter CitM TERM 222 727934 - 727904 - G 74 -11 -3.71848 | GTTGCTCATGAAGAA CGTCAGCGGCAGGC TCA GCAGGCCGGTGACG ATGGCCAGGTGCGGG RHA1_ro00665 729083 - 729826 + | GntR family transcriptional regulator TERM 223 730029 - 730011 - T 71 -7.4 -4.19238 | overlap 730020 TCTCGAAGTTCAAAA TCCTCAAC ATC GATGAGGA CGGCCATGCACTCAT RHA1_ro00666 730328 - 730041 - | hypothetical protein RHA1_ro00667 730827 - 730312 - | hypothetical protein RHA1_ro00668 731045 - 732088 + | transposase RHA1_ro00669 732085 - 732420 + | hypothetical protein RHA1_ro00670 732417 - 733046 + | IS element ATP-binding protein RHA1_ro00671 734541 - 733132 - | recombinase TERM 224 734704 - 734684 - R 70 -8.1 -3.96624 | opp_overlap 734688, overlap 734685 CACCGGCAGCACAAA TCGCGGCCG AGT CGGCCCCGC GGCCGACCGCAGCGG RHA1_ro00672 735056 - 734742 - | hypothetical protein xerD 736107 - 735046 - | tyrosine recombinase RHA1_ro00674 736239 - 736427 + | DNA replication protein, C-terminal RHA1_ro00675 737324 - 736629 - | glycoprotein RHA1_ro00676 738333 - 737335 - | hypothetical protein RHA1_ro00677 738918 - 738421 - | extracellular protein RHA1_ro00678 740253 - 739360 - | transposase RHA1_ro00679 740600 - 740250 - | transposase RHA1_ro00680 741057 - 740767 - | hypothetical protein RHA1_ro00681 741719 - 741426 - | hypothetical protein RHA1_ro00682 741781 - 742086 + | hypothetical protein RHA1_ro00683 742489 - 742232 - | hypothetical protein TERM 225 742678 - 742659 - R 76 -5.6 -4.58395 | overlap 742660 TGGACCCGTGAAAAA TGCACTCC ACGT GGAGCGCG TGCGGGAGGACAATT RHA1_ro00684 743342 - 743055 - | hypothetical protein RHA1_ro00685 743615 - 743361 - | hypothetical protein TERM 226 744101 - 744067 - g 70 -12.9 -3.28712 | gap 1 GCTGCTGTCCCACAA GCACCCGGAGGACCAC CCGC GTG-TCGCCCGGGTGC TGGACCGGATGGTCA RHA1_ro00686 743900 - 744553 + | hypothetical protein RHA1_ro00687 745441 - 744665 - | gas vesicle synthesis protein RHA1_ro00688 745824 - 745441 - | gas vesicle protein RHA1_ro00689 747869 - 745821 - | hypothetical protein RHA1_ro00690 748507 - 747875 - | hypothetical protein TERM 227 748796 - 748742 - R 74 -11 -3.65902 | overlap 748726 748745 CGGACCGCACCGAAA GACCGCGGGCTCTGCCGGCCCTCGGG ATA CCTGTCGGCCGGCGGGGCGCCCCGTC CGCGCGCGGACCGAG RHA1_ro00691 749211 - 748930 - | hypothetical protein TERM 228 749233 - 749195 - G 100 -26.1 -2.83409 | gap 1, overlap 749186 GAGTAATCCAGGACA GCGGTGGCCCGGCACACC TGGG GGCG-GCCGGGCCACCGC CCTGATCAGCACGAT RHA1_ro00692 749511 - 749248 - | hypothetical protein RHA1_ro00693 749816 - 751336 + | hypothetical protein RHA1_ro00694 752621 - 751821 - | gas vesicle synthesis protein RHA1_ro00695 752983 - 752618 - | gas vesicle structural protein TERM 229 753804 - 753776 - g 90 -16.7 -3.71527 | overlap 753796 GCTGAATCACCCAAA CGTCGTCGCCGTC CAC GACAGCGGCGACG ACCACGGTGCCCCGT RHA1_ro00696 753567 - 754871 + | serine/threonine protein kinase RHA1_ro00697 755679 - 755392 - | hypothetical protein RHA1_ro00698 755678 - 756112 + | hypothetical protein TERM 230 756782 - 756817 + G 77 -17.6 -2.66912 | overlap 756753 756773 CCGGCAAGGGTGTGG CGATCGCCGGCCTGGT ATTG AGCGGGCTGGCGATCG TCATCTCGATTGCCT RHA1_ro00699 756373 - 756948 + | hypothetical protein RHA1_ro00700 757418 - 757023 - | hypothetical protein RHA1_ro00701 758027 - 757458 - | hypothetical protein RHA1_ro00702 758664 - 758302 - | gas vesicle structural protein TERM 231 758679 - 758695 + H 72 -6.5 -4.27316 | overlap 758680 TAGCTGCGCTCCTTG TTTCCGG CTC CCGGAGG TTTTCGGTTGGGCGC RHA1_ro00703 759645 - 760058 + | hypothetical protein TERM 232 760551 - 760499 - g 73 -16 -2.57192 | overlap 760490 760495 ACCGAAGCGAACGGA CACCGCCGCCGCGTCGGCCTCGGG CACAC CCCGTCGGCGGCGCGCCGACGGCG AGGAGTCCTCCGGGC TERM 233 760865 - 760850 - g 84 -7.6 -4.77719 | CAAAATCCAACAAAA GATCCA GGAG TGGATC AAAACCCTCGTCGAC RHA1_ro00704 760173 - 761126 + | hypothetical protein TERM 234 761495 - 761475 - f 82 -3.9 -5.08824 | GGGGTAGTCAAAAAA CGCGCAC CCCTACC GCGCACG GTCTTGCGGCACATC RHA1_ro00705 761559 - 762353 + | hypothetical protein RHA1_ro00706 762350 - 763648 + | hypothetical protein RHA1_ro00707 763645 - 764019 + | gas vesicle structural protein RHA1_ro00708 764016 - 764825 + | gas vesicle synthesis protein RHA1_ro00709 764830 - 765081 + | gas vesicle synthesis protein RHA1_ro00710 765089 - 765367 + | gas vesicle synthesis protein RHA1_ro00711 765364 - 765768 + | gas vesicle protein RHA1_ro00712 765958 - 766218 + | gas vesicle protein RHA1_ro00713 766276 - 766557 + | gas vesicle synthesis protein TERM 235 766697 - 766671 - T 88 -17.2 -3.01712 | overlap 766685 CGCGGTGGCCCAATA CCCCGCCGGATG AAC CCCCCGGCGGGG TCACGGAACGGCCGG RHA1_ro00714 767192 - 766917 - | hypothetical protein RHA1_ro00715 767575 - 767189 - | hypothetical protein RHA1_ro00716 767834 - 768406 + | TetR family transcriptional regulator RHA1_ro00717 768399 - 768644 + | hypothetical protein TERM 236 768735 - 768758 + G 83 -19.6 -2.78384 | ACCTCGCCCGCGCCG TGCCCGCGGC TCTC GCCGCGGGCA TGTCGTGGGAGCAGG RHA1_ro00718 768641 - 768976 + | hypothetical protein RHA1_ro00719 769059 - 769301 + | hypothetical protein RHA1_ro00720 769340 - 769519 + | hypothetical protein RHA1_ro00721 769861 - 769586 - | hypothetical protein RHA1_ro00722 770089 - 770244 + | hypothetical protein TERM 237 770503 - 770446 - T 84 -14.6 -3.4285 | opp_overlap 770465, overlap 770457 GCACGTAATGCAGAA GCGGGCGGAAATCACCGGTGCGGCGC CGCTAC GCGCAGCGGCGGCGGTGTTCGCCCGC GTCGGCTACGCCGAT RHA1_ro00723 770901 - 770578 - | hypothetical protein RHA1_ro00724 774448 - 770951 - | 2-oxoacid ferredoxin oxidoreductase TERM 238 773815 - 773841 + g 75 -8.7 -4.18018 | gap 1 GCACGGCGGCGGAGC TCG-CGCCGTCG GCGA CGGCGGTGACGA TTTTCAGTCCCGACC RHA1_ro00725 775272 - 774496 - | methyltransferase leuD1 775882 - 775265 - | 3-isopropylmalate dehydratase small subunit leuC1 777292 - 775889 - | isopropylmalate isomerase large subunit RHA1_ro00728 777535 - 778008 + | AsnC family transcriptional regulator RHA1_ro00729 778683 - 778327 - | hypothetical protein RHA1_ro00730 778721 - 779737 + | dicarboxylate carrier protein RHA1_ro00731 780564 - 779734 - | hypothetical protein TERM 239 779770 - 779796 + g 90 -20.2 -3.21099 | opp_overlap 779770 CTCTGCGATACCCAA GCGCCGGTCACT TCC AGTGGCCGGCGC TTCATCGTGCGGAGC TERM 240 779796 - 779770 - G 85 -18 -3.12351 | opp_overlap 779770 CTCTGCGATACCCAA GCGCCGGTCACT TCC AGTGGCCGGCGC TTCATCGTGCGGAGC TERM 241 780410 - 780392 - G 73 -10.2 -3.89956 | overlap 780385 CCATCACAGACGAAA CGGCCCCT CCC AGGGGGCG GGCAGACGATCGTTC TERM 242 780676 - 780666 - H 72 -8.2 -4.18197 | AGCCGCCATGGAAAA CCGC GCC GCGG CCACAATCTCATCCA TERM 243 782224 - 782201 - g 100 -16 -4.21194 | opp_overlap 782201 782203 CGGGACGACGCAAAA GAGCGCAGCG AGCG CGCCGCGCTC CTGGCTGTTCTCGAC RHA1_ro00732 781235 - 782428 + | hypothetical protein RHA1_ro00733 782554 - 784563 + | phthalate 4,5-dioxygenase RHA1_ro00734 784789 - 785031 + | hypothetical protein RHA1_ro00735 787175 - 785634 - | hydrolase TERM 244 785990 - 786006 + g 73 -7.3 -4.14472 | CCCGAACGGACTCCG GGAGTTC AGG GAATTCC TTTTCCGCCTGTTGC TERM 245 787104 - 787053 - G 73 -10.1 -3.86897 | gap 2, opp_overlap 787053 787054, overlap 787054 CGGACCCTCGACAAA CTCCG--CCGGCGGATGCGCCACAG TCGT CGGTGGCGCACCGGACGGATCGGAA TTGCTGCTACACGCT TERM 246 787212 - 787232 + G 71 -9.7 -3.74872 | opp_overlap 787193, overlap 787214 787215 ACCGCCCGAACCTTG TGTTCGGGC TCG GCCCGAGTA TTTACTCGGATAAAT RHA1_ro00736 787211 - 787729 + | hypothetical protein RHA1_ro00737 788128 - 787808 - | hypothetical protein RHA1_ro00738 789138 - 788104 - | LuxR family transcriptional regulator TERM 247 789767 - 789788 + G 95 -14.5 -4.08216 | opp_overlap 789766 CGCCCTGCAACCCAT CGCCTCGAT CGGT ATCGAGGCG TTTTCGGCCGGCTCC RHA1_ro00739 789333 - 790352 + | polyketide synthesis 8-O-methyltransferase RHA1_ro00740 790380 - 791507 + | dimethylaniline monooxygenase (N-oxide-forming) RHA1_ro00741 791650 - 792636 + | resolvase RHA1_ro00742 792878 - 793456 + | hypothetical protein TERM 248 793455 - 793483 + T 71 -13.1 -3.01924 | opp_overlap 793449, overlap 793457 793459 793461 TCGAGCAGATCGGCT GACGCGCGTGAGC GTT GCCCACGTGTGTC TATTCGAGGACCGTA RHA1_ro00743 793842 - 793483 - | transposase RHA1_ro00744 794512 - 793853 - | transposase RHA1_ro00745 794795 - 795286 + | hypothetical protein RHA1_ro00746 795964 - 796203 + | hypothetical protein RHA1_ro00747 796232 - 796801 + | lignostilbene-alpha,beta-dioxygenase RHA1_ro00748 797123 - 796776 - | hypothetical protein TERM 249 797057 - 797046 - G 73 -7.2 -4.13246 | overlap 797053 797054 GAGTCCACACACAAA GCCG AAAC CGGC GAAGACCAGAGTGTG RHA1_ro00749 798903 - 797107 - | hypothetical protein TERM 250 798518 - 798564 + g 70 -12.2 -3.33261 | gap 1 TGCGCGTCCGCGGTT GCTGCGCGCCGACGTGG-AGG ATCGGG CCGACCACCACGGCGTGCAGC TTGTCGGGGTTGGCC RHA1_ro00750 799132 - 798890 - | hypothetical protein RHA1_ro00751 799422 - 800513 + | transposase TERM 251 800776 - 800733 - f 93 -18.9 -3.14564 | gap 1, opp_overlap 800728 GGACCTGTCGATGAA GTGCAGAGGCGCCTCCAGGG TCGCT CCCCGGAGGCGCCTC-ACTC TGCCCTCTTGACAGA RHA1_ro00752 800930 - 801451 + | hypothetical protein RHA1_ro00753 801989 - 803695 + | poly(3-hydroxyalkanoate) polymerase RHA1_ro00754 804026 - 804997 + | poly(3-hydroxyalkanoate) depolymerase TERM 252 807824 - 807812 - g 70 -4.1 -4.39426 | GATACGGCGAGAAAA TGTAC CGG GCACA CTCTCTGTGGGCCAT RHA1_ro00755 805165 - 808428 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro00756 809843 - 808860 - | beta lactamase RHA1_ro00757 810169 - 809861 - | hypothetical protein RHA1_ro00758 810713 - 810207 - | hypothetical protein RHA1_ro00759 811999 - 810836 - | acyl-CoA dehydrogenase RHA1_ro00760 813810 - 811996 - | hypothetical protein RHA1_ro00761 814217 - 813807 - | hypothetical protein RHA1_ro00762 814766 - 814218 - | hypothetical protein RHA1_ro00763 815922 - 814750 - | formyl-CoA transferase RHA1_ro00764 816998 - 816444 - | hypothetical protein RHA1_ro00765 817134 - 817874 + | IclR family transcriptional regulator RHA1_ro00766 818579 - 817935 - | TetR family transcriptional regulator TERM 253 818361 - 818396 + g 70 -8.2 -3.83502 | overlap 818393 CGCGCCGTGGCGGTC GAGGGCCTCCTCCACG GCCG CGTGAAAGAGCTCCTC TTTGGTCTGAAAGTG RHA1_ro00767 820336 - 818705 - | hypothetical protein RHA1_ro00768 820841 - 820347 - | hypothetical protein RHA1_ro00769 821593 - 821246 - | hypothetical protein RHA1_ro00770 822382 - 823059 + | hypothetical protein RHA1_ro00771 823392 - 823096 - | hypothetical protein RHA1_ro00772 824332 - 823412 - | LysR family transcriptional regulator RHA1_ro00773 824582 - 826165 + | dicarboxylate carrier protein TERM 254 826941 - 826962 + G 83 -15.1 -3.61398 | CCGAGCCACGATGGT CGTCGCCGG AGCC CCGGCGGCG TTGTTCGACGCCGCC RHA1_ro00774 826348 - 827487 + | hypothetical protein TERM 255 827883 - 827841 - g 75 -4.9 -4.57569 | overlap 827842 827843 TGATGCTCGCAAAAA CCGAAGCC-GCCGAACATGTC ACC GAAACCTTCGACCGGC-TCGG CGGATCCACCCCGGT RHA1_ro00775 827531 - 828376 + | citrate lyase RHA1_ro00776 829316 - 828396 - | LysR family transcriptional regulator RHA1_ro00777 829531 - 830802 + | CoA transferase RHA1_ro00778 830799 - 831593 + | citrate (pro-3S)-lyase beta subunit RHA1_ro00779 831617 - 831859 + | hypothetical protein RHA1_ro00780 832348 - 832058 - | hypothetical protein RHA1_ro00781 833352 - 832447 - | AraC family transcriptional regulator TERM 256 833704 - 833686 - H 72 -11.6 -3.53224 | opp_overlap 833681 GACTCTGCGCCGAAA GCGAGGCG GAT CGCCGCGC AACCGTTGTGGCTGA RHA1_ro00782 833830 - 834336 + | hypothetical protein RHA1_ro00783 834642 - 835604 + | NADPH:quinone reductase RHA1_ro00784 836459 - 835815 - | hypothetical protein TERM 257 836207 - 836217 + g 75 -8.2 -4.11216 | CGCGTTCGCGTTCGA CGCC TTG GGCG TTTTGGCGATCGAAG RHA1_ro00785 836806 - 837099 + | acetyltransferase RHA1_ro00786 837120 - 837386 + | hypothetical protein RHA1_ro00787 837383 - 837952 + | hypothetical protein TERM 258 838303 - 838265 - T 77 -11.7 -3.78329 | gap 1 CCGCAGCAAGTGAAA TCGGGG-GTGGTGAGGAG CAAG CCCCTCACACCACCCCGA GCCCGAGCCCGTCAA RHA1_ro00788 840746 - 838425 - | protein kinase/ LuxR family transcriptional regulator RHA1_ro00789 841056 - 841331 + | sigma factor TERM 259 841413 - 841444 + G 82 -14.4 -3.72695 | gap 1, opp_overlap 841403 841406 GGAGACGACGCACCG GTGAACGTCGCGGCG GTA CGCCGCGACGA-CGC TTTGATCGACGCGAT RHA1_ro00790 841341 - 842462 + | hypothetical protein RHA1_ro00791 842994 - 842692 - | hypothetical protein RHA1_ro00792 843404 - 844048 + | DNA-binding protein RHA1_ro00793 844912 - 844226 - | hypothetical protein RHA1_ro00794 845971 - 845027 - | aromatic acid symporter RHA1_ro00795 846529 - 846185 - | hypothetical protein TERM 260 846457 - 846500 + g 78 -16 -3.01119 | gap 1, opp_overlap 846443 846451 846464 AGCGCGAAACCCTCG CACAGGAGGGAGTCCCCGG TATCGGT CCGGGGACTCCC-CCGGGG TCTGTGTCCATCAAT TERM 261 846494 - 846464 - G 82 -19.8 -2.62515 | opp_overlap 846457, overlap 846451 AACCCTCGCACAGGA GGGAGTCCCCGG TATCGGT CCGGGGACTCCC CCGGGGTCTGTGTCC RHA1_ro00796 847137 - 846526 - | hypothetical protein TERM 262 847213 - 847246 + r 100 -20.3 -3.60792 | GGCTGCGGCAGGTGA CCCGGTGGGTGGTCC CGCA GAGCCACCCACCGGG TTTCGAACTTCAAAC TERM 263 847283 - 847261 - R 84 -14.1 -3.66178 | GTTTCGAACTTCAAA CGGCCACCG TGCAC CGGCGGCCG CGTCACACCTCTAGC RHA1_ro00797 848169 - 847294 - | nitroreductase RHA1_ro00798 848309 - 849049 + | short chain dehydrogenase/reductase RHA1_ro00799 849859 - 849062 - | RNA-directed DNA polymerase RHA1_ro00800 850967 - 850584 - | endoribonuclease L-PSP RHA1_ro00801 851790 - 851026 - | ABC amino acid transporter, ATP-binding component RHA1_ro00802 852722 - 851787 - | ABC amino acid transporter, permease component TERM 264 853644 - 853669 + r 71 -14.1 -2.77182 | opp_overlap 853637, overlap 853647 TGAGAGTAGCCTCCG GGAGTCCTCGT CATG ACGAGGACTTC TGCTTCGGTGTGGCC TERM 265 853647 - 853666 + r 75 -12.2 -3.53366 | opp_overlap 853637, overlap 853644 GAGTAGCCTCCGGGA GTCCTCGT CATG ACGAGGAC TTCTGCTTCGGTGTG RHA1_ro00803 854952 - 853654 - | FMN-dependent dehydrogenase RHA1_ro00804 855076 - 856728 + | hypothetical protein RHA1_ro00805 856992 - 856687 - | hypothetical protein RHA1_ro00806 858252 - 857062 - | hypothetical protein RHA1_ro00807 859197 - 858298 - | LysR family transcriptional regulator RHA1_ro00808 860276 - 859203 - | 2-nitropropane dioxygenase RHA1_ro00809 860304 - 861206 + | LysR family transcriptional regulator RHA1_ro00810 861883 - 861194 - | hypothetical protein RHA1_ro00811 863256 - 861880 - | major facilitator transporter RHA1_ro00812 864304 - 863315 - | 2-nitropropane dioxygenase RHA1_ro00813 865274 - 864534 - | lipoate-protein ligase A TERM 266 865412 - 865463 + r 77 -15.1 -2.89564 | CCGCGGTGGAATGGC CGGGCAGGGCGGG-GGTCGTGTTGT CGTG ACGACCCACCCGCCCGCCC-GCCCG TATATCGGATCGCGG RHA1_ro00814 866491 - 865502 - | transketolase, C-terminal subunit RHA1_ro00815 867351 - 866488 - | transketolase, N-terminal subunit RHA1_ro00816 867443 - 868234 + | IclR family transcriptional regulator RHA1_ro00819 869178 - 870146 + | ABC ribose transporter, substrate-binding component RHA1_ro00820 870150 - 871685 + | ABC ribose transporter, ATP-binding component RHA1_ro00821 871682 - 872701 + | sugar ABC transporter permease TERM 267 872877 - 872834 - g 70 -12.4 -3.28712 | gap 1, opp_overlap 872821, overlap 872835 CCTCGCGGTGGAGAA CCCCGCCACCGGCGATGT-GA TCG CCGAGATCGCCGACGGCGGGC TCGCCGACATGGCCG TERM 268 872876 - 872835 - g 73 -15.9 -2.57132 | gap 1, opp_overlap 872821, overlap 872834 CTCGCGGTGGAGAAC CCCGCCACCGGCGATGT-GA TCG CCGAGATCGCCGACGGCGGG CTCGCCGACATGGCC gabD2 872694 - 874223 + | succinate-semialdehyde dehydrogenase (NAD(P)+) RHA1_ro00823 874220 - 875281 + | hypothetical protein RHA1_ro00824 875312 - 877054 + | flavin-containing monooxygenase TERM 269 877366 - 877386 + G 72 -3.2 -4.63218 | gap 1 CCCAGGCCACGCCGT CCT-CGGGG GTGA CCGCGCAGG TTTTGTTCGAGACGA RHA1_ro00825 877284 - 877721 + | hypothetical protein cobK 878486 - 877743 - | precorrin-6A reductase cobM 879238 - 878489 - | precorrin-4 C(11)-methyltransferase cobL 880470 - 879235 - | precorrin-6Y C(5,15)-methyltransferase (decarboxylating) RHA1_ro00829 881195 - 880467 - | short chain dehydrogenase RHA1_ro00830 881274 - 881687 + | hypothetical protein RHA1_ro00831 882405 - 881647 - | glycosyl transferase RHA1_ro00832 883663 - 882524 - | Xaa-Pro dipeptidase TERM 270 883384 - 883352 - G 79 -15.5 -3.2614 | CAGTCCCGACACCAA CGCGTACGGGTCGAC CCC GTCGACCCAGTCGCG GATCGTCAGACCGAG TERM 271 884578 - 884532 - g 95 -22.4 -3.06696 | gap 1 TGTCCCGCGAAGACA CG-CTGCCTGCCGAACCGGTC GACGCG GACCGGCTCGGCAGGCTGGCG GAGGAACTCGGAATC RHA1_ro00833 883700 - 884656 + | DNA polymerase I TERM 272 884664 - 884632 - T 74 -2.6 -4.72272 | gap 2, opp_overlap 884655 884659, overlap 884634 GGCGGCGATGAAAAA GGTGGCCGCCGCACGG GTT CCGTG-AG-GGCCGTC TAGCTGGGGCGGCTC RHA1_ro00834 885353 - 884664 - | hypothetical protein RHA1_ro00835 888191 - 885456 - | ATP-dependent helicase TERM 273 887605 - 887644 + g 71 -11.4 -3.64703 | gap 1 CACAGCGGGATCGGG CGGTTCTCGTCGACCACCA CGG TGGTG-TCGCCGCGCACCG TTTCCATCCACGCGC tatC 889250 - 888210 - | Sec-independent protein translocase transmembrane protein TERM 274 889152 - 889110 - G 73 -9.9 -3.85864 | GGAGTACCAGAAGAA GCCCACCG-CGGTGGTGACCA CGA TGGCCAGCACCGACAG-GAGC AACCGCGTGCGCAGC TERM 275 889304 - 889283 - R 82 -15.9 -3.09516 | opp_overlap 889283 TTGGTCAGCAGGCAA CCGGGGTGA AGAA TCACCCCGG TTGTCAGGCGGCTCG TERM 276 889283 - 889304 + r 86 -15.9 -3.29144 | opp_overlap 889283 TTGGTCAGCAGGCAA CCGGGGTGA AGAA TCACCCCGG TTGTCAGGCGGCTCG tatA 889597 - 889322 - | Sec-independent protein translocase protein TERM 277 889403 - 889448 + g 74 -13.1 -3.57039 | gap 1 GGTGTCCGCCACGGG CAGCTCGGCGGGCGCGCTCTGC TGC GCGGTGGGCGCCGGC-GTGCTG TTGTCGTTCTGCATC RHA1_ro00838 890734 - 889670 - | 2-dehydropantoate 2-reductase RHA1_ro00839 891711 - 890731 - | hypothetical protein RHA1_ro00840 892699 - 891704 - | hypothetical protein RHA1_ro00841 894090 - 892747 - | hypothetical protein RHA1_ro00842 894179 - 895645 + | diacylglycerol kinase RHA1_ro00843 896415 - 895636 - | proteasome alpha subunit RHA1_ro00844 897131 - 896412 - | proteasome beta subunit TERM 278 897222 - 897253 + r 77 -12.4 -3.57462 | gap 1, opp_overlap 897213 897225 CAGATACTCGGTGAA CGA-GCTCAGATTCG AAC CGAAACTGAGCCTCG TTTCACCGTCGCCTG RHA1_ro00845 897487 - 897293 - | hypothetical protein RHA1_ro00846 899157 - 897658 - | proteasome component RHA1_ro00847 899609 - 899232 - | hypothetical protein RHA1_ro00848 899692 - 900240 + | NUDIX hydrolase RHA1_ro00849 902079 - 900304 - | AAA family ATPase RHA1_ro00850 902262 - 902765 + | hypothetical protein TERM 279 902772 - 902810 + T 100 -21.7 -2.88579 | TGCAGCTAGCTTTCC CTCCTTCGGCGGCGCCC TCTCC GGTCGCCGCCGAAGGCG TGTCTCAGCCCTTGC RHA1_ro00851 903669 - 902815 - | S-adenosylmethionine-dependent methyltransferase RHA1_ro00852 903764 - 904669 + | hypothetical protein RHA1_ro00853 904666 - 905502 + | hypothetical protein TERM 280 905483 - 905521 + T 75 -13.7 -3.01712 | overlap 905486 TCGCCCAGACCGTAC AGGTCCGCGCCCGCCCC TGAGC GGAGCGAGCGCGGATCG TGTTGCGGGCGGGGC TERM 281 905486 - 905518 + T 78 -16.2 -2.73875 | overlap 905483 CCCAGACCGTACAGG TCCGCGCCCGCCCC TGAGC GGAGCGAGCGCGGA TCGTGTTGCGGGCGG hisG 906418 - 905567 - | ATP phosphoribosyltransferase hisE 906747 - 906466 - | phosphoribosyl-ATP pyrophosphatase RHA1_ro00856 907666 - 906773 - | pseudouridylate synthase RHA1_ro00857 908525 - 907668 - | hypothetical protein RHA1_ro00858 909233 - 908541 - | hydrolase metH 912795 - 909226 - | methionine synthase RHA1_ro00860 912847 - 913788 + | hypothetical protein TERM 282 914264 - 914233 - g 72 -13.7 -3.14931 | gap 1, opp_overlap 914239 TCCAGGCCGCAGGAA CGTCGAGCGCGCCG CTCGT CGGCGGGCTCG-CG GCGGAGGTCGACTGG RHA1_ro00861 913785 - 914936 + | major facilitator superfamily multidrug resistance protein nasD 915027 - 917522 + | nitrite reductase [NAD(P)H] large subunit nasE 917519 - 917845 + | nitrite reductase [NAD(P)H] small subunit TERM 283 918646 - 918656 + G 70 -8.2 -3.8917 | opp_overlap 918642 GGACCAGCACACTCC CGCC GTG GGCG TTCTTCTCGTTGCCC TERM 284 918669 - 918701 + G 90 -20.5 -3.16191 | overlap 918694 GCGTTCTTCTCGTTG CCCGCCCGCGCCTGG GAA CTGGCCGCGGGCGGG TTGGTCGCCCTGTCG TERM 285 919733 - 919750 + G 70 -8.4 -3.84719 | CGTGCTGAGCATGTC TCGGCG GTACGG CGCCGA TTTCGGTTTCACCGT RHA1_ro00864 917970 - 920156 + | acyltransferase RHA1_ro00865 920368 - 920631 + | hypothetical protein RHA1_ro00866 921029 - 920646 - | hypothetical protein RHA1_ro00867 921152 - 921952 + | AraC family transcriptional regulator RHA1_ro00868 922181 - 921969 - | hypothetical protein RHA1_ro00869 922828 - 922193 - | transcriptional regulator RHA1_ro00870 922822 - 923673 + | methyltransferase RHA1_ro00871 923845 - 924966 + | hypothetical protein RHA1_ro00872 925149 - 926312 + | hypothetical protein RHA1_ro00873 926615 - 928066 + | hypothetical protein RHA1_ro00874 928063 - 929457 + | hypothetical protein RHA1_ro00875 929454 - 933611 + | hypothetical protein RHA1_ro00876 935325 - 933724 - | hypothetical protein TERM 286 934347 - 934390 + g 70 -15.3 -2.70932 | gap 2, overlap 934303 934356 GCGAGTCGGGGTCGG TGGTGTTGCGGCGCCGCTGCC CGGC GGCAGCGGCG-CGCT-CACCC TGCTTGCGCAGGGCG TERM 287 935409 - 935366 - R 100 -15.2 -4.22375 | gap 1, opp_overlap 935366 935365, overlap 935368 935369 935371 ACATTATCCAAGAAA CATCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGGAA ATTTGAAACAGCCCC TERM 288 935407 - 935368 - R 100 -20 -3.70709 | gap 1, opp_overlap 935366 935365, overlap 935366 935369 935371 ATTATCCAAGAAACA TCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGG AAATTTGAAACAGCC TERM 289 935406 - 935369 - R 100 -23.5 -2.81702 | gap 1, opp_overlap 935366 935365, overlap 935368 935366 935371 TTATCCAAGAAACAT CAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCG GAAATTTGAAACAGC TERM 290 935404 - 935371 - R 100 -22.5 -2.94962 | gap 1, opp_overlap 935366 935365, overlap 935369 935368 935366 ATCCAAGAAACATCA GGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACC CGGAAATTTGAAACA RHA1_ro00877 936690 - 935443 - | cysteinyl-tRNA synthetase RHA1_ro00878 937567 - 936764 - | hypothetical protein RHA1_ro00879 938164 - 937571 - | hypothetical protein RHA1_ro00880 939135 - 938437 - | phosphoglycerate mutase RHA1_ro00881 940021 - 939176 - | undecaprenyl pyrophosphate phosphatase RHA1_ro00882 940226 - 941185 + | oxidoreductase RHA1_ro00883 941284 - 941970 + | heme oxygenase (decyclizing) RHA1_ro00884 941976 - 943007 + | ABC heme uptake porter, binding periplasmic protein TERM 291 943993 - 944023 + G 72 -8.2 -4.06611 | overlap 944002 CGCGGACCTCCCGCT CGGCATGCTGAC GGCCCTG GTCGGCGGGCCG TTCTTCTTCTGGTTG RHA1_ro00885 943004 - 944077 + | ABC heme uptake porter, permease component RHA1_ro00886 944074 - 944952 + | hemin importer ATP-binding subunit RHA1_ro00887 945316 - 944963 - | hypothetical protein RHA1_ro00888 945501 - 946511 + | lipoprotein RHA1_ro00889 946512 - 946751 + | hypothetical protein TERM 292 947258 - 947273 + G 71 -10.4 -3.80573 | opp_overlap 947240 CGAGCGCGCAACTGC TCGGCC CGCT GGCCGA TTTCATGGTGGTCAA RHA1_ro00890 946786 - 947832 + | dihydroorotate dehydrogenase 2 TERM 293 947848 - 947890 + T 100 -26.4 -3.36569 | opp_overlap 947850, overlap 947848 947850 CACGGACCGCACACA GACCGGTGGCCGGCGAATCC AGA GGATTCGCCGGCCACCCGTG TCTTTCCGGAGTTGC TERM 294 947848 - 947892 + T 100 -26 -3.57561 | gap 2, opp_overlap 947850, overlap 947848 947850 CACGGACCGCACACA GAC-C-GGTGGCCGGCGAATCC AGA GGATTCGCCGGCCACCCGTGTC TTTCCGGAGTTGCCG TERM 295 947888 - 947850 - T 100 -29 -3.00022 | opp_overlap 947848 947848 947850 CGGACCGCACACAGA CCGGTGGCCGGCGAATCC AGA GGATTCGCCGGCCACCCG TGTCTTTCCGGAGTT TERM 296 947850 - 947888 + T 100 -29 -3.24976 | opp_overlap 947850, overlap 947848 947848 CGGACCGCACACAGA CCGGTGGCCGGCGAATCC AGA GGATTCGCCGGCCACCCG TGTCTTTCCGGAGTT RHA1_ro00891 948440 - 947910 - | hypothetical protein RHA1_ro00892 949827 - 948475 - | hypothetical protein TERM 297 950079 - 950042 - H 100 -23.7 -3.00022 | gap 1, opp_overlap 950048 950075, overlap 950048 CTGAGTTGAGACAGA CGAA-AAGGCCCCGGTTC ATC GAACCGGGGCCTTCTTCG TGAGAGGGCGAAGTT TERM 298 950048 - 950072 + H 100 -21.5 -3.71848 | opp_overlap 950042 950048 TGAGACAGACGAAAA GGCCCCGGTTC ATC GAACCGGGGCC TTCTTCGTGAGAGGG TERM 299 950072 - 950048 - H 100 -21.5 -4.41353 | opp_overlap 950048, overlap 950042 TGAGACAGACGAAAA GGCCCCGGTTC ATC GAACCGGGGCC TTCTTCGTGAGAGGG TERM 300 950800 - 950780 - g 71 -10.4 -3.72324 | CATCCTGATCAACAA CGCCGCAC AGACG GTGCGACG TTCCCCCGGCGCCTA RHA1_ro00894 950097 - 951551 + | short chain dehydrogenase RHA1_ro00895 951656 - 952072 + | universal stress protein RHA1_ro00896 952150 - 952557 + | hypothetical protein RHA1_ro00897 952594 - 953838 + | hypothetical protein TERM 301 953881 - 953833 - f 81 -13.2 -3.64822 | gap 2, opp_overlap 953833, overlap 953834 ATCTCTGCACGCAAA CTGTGAGCGGTTGGGCGCGTGTGA AGA TGACACGCGCCCA-CCCCTC-CCG CTAATGTCGACCCTT TERM 302 954041 - 954060 + F 71 -9.3 -3.74693 | ACCAGGGATGTTGCT GACCAGC CTGCTC GCTGGTC TTTGCTGCCCTGACG RHA1_ro00898 954101 - 955066 + | hypothetical protein glcB 955189 - 957372 + | malate synthase G RHA1_ro00900 957509 - 959296 + | hypothetical protein RHA1_ro00901 959293 - 960447 + | phosphoesterase TERM 303 960454 - 960485 + T 100 -21.6 -2.87463 | overlap 960456 GAGGACTGAGCGAGC GATGCCCGCCCCGC GTGA GCGGGACGGGCATC TGTGTCAGGCGCCTT TERM 304 960456 - 960483 + T 89 -18.4 -2.98823 | overlap 960454 GGACTGAGCGAGCGA TGCCCGCCCCGC GTGA GCGGGACGGGCA TCTGTGTCAGGCGCC gcvP1 963342 - 960490 - | glycine dehydrogenase RHA1_ro00903 964330 - 963710 - | MerR family transcriptional regulator RHA1_ro00904 965088 - 964615 - | hypothetical protein RHA1_ro00905 965971 - 965231 - | transcriptional regulator RHA1_ro00906 966468 - 965968 - | hypothetical protein TERM 305 966698 - 966709 + r 76 -5.8 -4.56597 | opp_overlap 966691 ATTACGAACCGGTAT TCCG ACAG CGGA TTTTTCCGGCAACCC gcvH 967193 - 966789 - | glycine cleavage system protein H RHA1_ro00908 967982 - 967236 - | hypothetical protein RHA1_ro00909 968388 - 967990 - | hypothetical protein RHA1_ro00910 969248 - 968385 - | hypothetical protein pgsA 969871 - 969248 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RHA1_ro00912 971045 - 969987 - | strictosidine synthase RHA1_ro00913 971705 - 971088 - | NUDIX hydrolase RHA1_ro00914 973299 - 971779 - | AMP-dependent acyl-CoA synthetase RHA1_ro00915 974455 - 973334 - | hypothetical protein RHA1_ro00916 975299 - 974496 - | short chain dehydrogenase TERM 306 975410 - 975425 + H 95 -7.6 -5.06816 | opp_overlap 975396 975397 975406 ACTGTCAAGAATTCT CTTGAC GACT GTCAAG TTTTTGTTACACAGT RHA1_ro00917 975509 - 976144 + | TetR family transcriptional regulator RHA1_ro00918 976591 - 976151 - | hypothetical protein TERM 307 976680 - 976633 - H 83 -17.6 -2.62184 | gap 1 CGGGTTCCGACAGTA CTCGCGACGGTCCGGCGGCGCGG TCA CATCGCCGCCGGACCGTCG-GTC ATAGAAGTGACGGCC RHA1_ro00919 976744 - 978219 + | major facilitator superfamily multidrug resistance protein TERM 308 978274 - 978216 - T 85 -17 -3.14564 | opp_overlap 978221 978231, overlap 978220 CGAGCGCCGCACGAA CTGA-C-CCCCGGCGGGCTCGTCAGTCGAG GTT CTCGAC-GACGAGCCCGGCGAGGCGCTCA- CGGTCGGCGAGGATG TERM 309 978269 - 978220 - T 100 -25.1 -2.56596 | gap 1, opp_overlap 978221 978231, overlap 978216 CGCCGCACGAACTGA CCCCCGGCGGGCTCGTCAGTCGAG GTT CTCGAC-GACGAGCCCGGCGAGGC GCTCACGGTCGGCGA RHA1_ro00920 979113 - 978235 - | sigma factor, includes region 2 RHA1_ro00921 979297 - 980058 + | lipoprotein TERM 310 980117 - 980076 - T 100 -23.9 -2.87211 | opp_overlap 980083, overlap 980083 ACCGGCCCCGAGACA CAGAAAAGGCGGTTTCCCG TTTC CGGGAAACCGCCTTCGCTG ATCATCTGGTCGGGC TERM 311 980110 - 980083 - T 100 -21.4 -4.64844 | opp_overlap 980083, overlap 980076 CCGAGACACAGAAAA GGCGGTTTCCCG TTTC CGGGAAACCGCC TTCGCTGATCATCTG TERM 312 980083 - 980110 + T 100 -21.4 -3.11192 | opp_overlap 980083 980076 CCGAGACACAGAAAA GGCGGTTTCCCG TTTC CGGGAAACCGCC TTCGCTGATCATCTG engA 981714 - 980287 - | GTP-binding protein EngA cmk 982400 - 981711 - | cytidylate kinase TERM 313 982077 - 982107 + g 80 -16 -3.14564 | GAGCAGTTCACGCAC GGCCGGTACGGCGG AGA CCGCCGAGACGGCC TTGGTCACCGCGTCG RHA1_ro00925 983122 - 982397 - | pseudouridylate synthase ribosomal large subunit RHA1_ro00926 984167 - 983475 - | hypothetical protein TERM 314 983805 - 983749 - G 70 -14.6 -2.78463 | AGTGTGCGCACCACA CCATCCAC-GTTGACGCCGCGCACCG CACTGAT CCGTGCGCGG-GTCAACGGTTGACGG TATGCCACCACGGCC RHA1_ro00927 985039 - 984164 - | segregation and condensation protein RHA1_ro00928 985999 - 985040 - | ParaA family ATPase xerD 987029 - 986103 - | site-specific tyrosine recombinase XerD RHA1_ro00930 987699 - 987031 - | ADP-ribose diphosphatase RHA1_ro00931 989488 - 987713 - | CTP synthetase RHA1_ro00932 990580 - 989630 - | hypothetical protein RHA1_ro00933 991761 - 990577 - | hypothetical protein recN 993644 - 991872 - | DNA repair protein RecN TERM 315 992010 - 992036 + g 73 -10.1 -3.85698 | opp_overlap 992008 CGTGTGCACACCACT GCTGACGACGC CGTCC GCGTCGTCGAC TTTGTCGACCACCAG ppnK 994609 - 993647 - | inorganic polyphosphate/ATP-NAD kinase TERM 316 994198 - 994226 + g 73 -16.7 -2.64155 | overlap 994196 CACGACGCACCACCT GGGCGAGCGCCTC GTC GAGGTGCTCGGCC TCCGTTTCCGCGAGG RHA1_ro00936 995580 - 994606 - | hemolysin RHA1_ro00937 996738 - 995743 - | phosphatase RHA1_ro00938 997703 - 996735 - | hypothetical protein TERM 317 997756 - 997718 - R 93 -14 -4.03234 | gap 1, opp_overlap 997726 997751, overlap 997721 TTCCTTTCACACAAA CCACGAAAGGGGACCCA GTATAT TGGGTCCCCTTTCG-GT AACGGATGTTCGGCG TERM 318 997754 - 997721 - R 100 -21.2 -3.06418 | opp_overlap 997726 997751, overlap 997718 CTTTCACACAAACCA CGAAAGGGGACCCA GTATAT TGGGTCCCCTTTCG GTAACGGATGTTCGG TERM 319 997726 - 997749 + r 87 -14.6 -3.6502 | opp_overlap 997721 997718 ACACAAACCACGAAA GGGGACCCAG TATA TTGGGTCCCC TTTCGGTAACGGATG TERM 320 997912 - 997949 + r 74 -5 -4.49353 | opp_overlap 997917 997919 997921, overlap 997917 997919 ACACGGAACATCAGC GAAGACACA-CATCACCA TTGG TGGTGGGGGTGTG-CTTC TTTCTTCTGTTCTGA TERM 321 999118 - 999129 + r 74 -2.2 -4.7254 | CGTCTTACGACTTCG CACG GACC TGTG TTTTTAGTAAACAGT TERM 322 1001244 - 1001225 - R 76 -2 -4.95758 | overlap 1001228 ACCAGACCAGAAAAA GCACACCC TCAC GGGCACAC CCTCCTGCGGTTTGA TERM 323 1002414 - 1002432 + r 76 -9.6 -4.07568 | overlap 1002410 CGTATCGCCTGCAGG CTCACAGT TGA GCTGTGAG TTTTCACAAACGACG TERM 324 1003432 - 1003451 + r 74 -12.8 -3.28912 | CGTCCAACCTCGTGT CCCCGGCC TCGC GGTCGGGG TTGGTGTCCGTGTCG TERM 325 1003582 - 1003542 - R 100 -19.8 -4.23758 | gap 2 ATCCGACAGGTAAAA TCCG--CTGGTGGCCCGCGC TGC GCGCGGGCCACCGGACCGGA GTCCGCCGAATTACG tyrS 1004907 - 1003618 - | tyrosyl-tRNA synthetase RHA1_ro00943 1005575 - 1004904 - | 3-methyladenine DNA glycosylase RHA1_ro00944 1005615 - 1006346 + | ABC transporter, ATP-binding component RHA1_ro00945 1006346 - 1007101 + | ABC transporter, permease component RHA1_ro00946 1007098 - 1007721 + | TetR family transcriptional regulator RHA1_ro00947 1007934 - 1007722 - | hypothetical protein RHA1_ro00948 1010957 - 1007973 - | acyl-CoA synthetase argH 1012488 - 1011070 - | argininosuccinate lyase TERM 326 1011574 - 1011610 + g 79 -10.8 -4.02817 | gap 1, overlap 1011592 GTTGCCGATCAGTCG CCCGGACTTGCCGCGGG TGAG CTCG-GACACGTCCGGG TTCTTCTTCTGCGGC TERM 327 1012412 - 1012461 + g 75 -16.4 -2.85896 | gap 2, overlap 1012409 GTGGACTTGCTCAGC GCCGCCATGGCGGCGGCCGGTCCG GACT CGAACCGGCCGCC-CCAGAG-GGC TCCTTCGTTGGTGCC argG 1013690 - 1012491 - | argininosuccinate synthase argR 1014346 - 1013738 - | arginine repressor argF 1015290 - 1014343 - | ornithine carbamoyltransferase argD 1016486 - 1015287 - | acetylornithine aminotransferase argB 1017409 - 1016483 - | acetylglutamate kinase argJ 1018650 - 1017406 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 328 1017836 - 1017822 - G 74 -12.8 -3.55071 | opp_overlap 1017820 CCAGATCGTCGCAAA CGGCCG TCA CGGCCG CATTCAGTTCTTCCT argC 1019702 - 1018647 - | N-acetyl-gamma-glutamyl-phosphate reductase RHA1_ro00957 1020169 - 1019771 - | hypothetical protein pheT 1022701 - 1020215 - | phenylalanyl-tRNA synthetase subunit beta pheS 1023854 - 1022769 - | phenylalanyl-tRNA synthetase subunit alpha TERM 329 1023804 - 1023842 + g 86 -5.9 -5.00616 | gap 1, overlap 1023807 GAGCGCACTCGCATC GACCGCGCCGCCTTCGAC GCCC GT-GGAGGCAGCGCCCTC TTTTTTAGCCACGAC RHA1_ro00960 1024758 - 1023949 - | tRNA/rRNA methyltransferase TERM 330 1024768 - 1024721 - G 77 -17.8 -2.63102 | gap 1, opp_overlap 1024725, overlap 1024725 AGCAGCTTGACAGCA GAAACGACCCGTGGGGTGCGCTC GGT GAGCGGGTC-CACGGGTCGTTTC CGAGGCTCTGAAGGC TERM 331 1024764 - 1024725 - G 83 -12.8 -4.0162 | gap 1, opp_overlap 1024725, overlap 1024721 GCTTGACAGCAGAAA CGACCCGTGGGGTGCGCTC GGT GAGCGGGTC-CACGGGTCG TTTCCGAGGCTCTGA TERM 332 1024725 - 1024764 + g 93 -17.2 -3.55071 | gap 1, opp_overlap 1024721 1024725 GCTTGACAGCAGAAA CGACCCGTGGGGTGCGCTC GGT GAGCG-GGTCCACGGGTCG TTTCCGAGGCTCTGA rplT 1025204 - 1024815 - | 50S ribosomal protein L20 rpmI 1025462 - 1025268 - | 50S ribosomal protein L35 infC 1026092 - 1025520 - | translation initiation factor IF-3 TERM 333 1025600 - 1025648 + g 100 -21.8 -3.54307 | overlap 1025611 GTGCCGGTGCGGCCG GCGCGGGAGTTGC-CCGCTGCGCC GGC GGCGCAGCGGCGCT-TTCCTGCGC TTTCACCCGGGTCTT TERM 334 1025611 - 1025638 + g 95 -19.2 -3.7795 | gap 1, overlap 1025600 GCCGGCGCGGGAGTT GC-CCGCTGCGCC GGC GGCGCAGCGGCGC TTTCCTGCGCTTTCA TERM 335 1026284 - 1026249 - g 100 -9.7 -5.45652 | gap 1 ATTCCCAACAAAAAA GCCCCGCGGCGGTGAA TGACT CTCACCAT-GCGGGGC CCGATGTCGACCGAT RHA1_ro00964 1026200 - 1026505 + | hypothetical protein RHA1_ro00965 1026555 - 1026938 + | hypothetical protein RHA1_ro00966 1026939 - 1027352 + | hypothetical protein RHA1_ro00967 1028156 - 1027359 - | transcriptional regulator TERM 336 1028285 - 1028327 + Gr 72 -12.7 -3.05384 | gap 1, opp_overlap 1028302 GTGGCTTCCGACCTG GTCC-GGCGAGGACATCACG TCAC CGCGGTGACCTTGCCCGGAC TTCACTCCGCGGACA RHA1_ro00968 1028150 - 1028926 + | esterase TERM 337 1028941 - 1028997 + Tr 93 -17.3 -3.38812 | gap 3, opp_overlap 1028932 1028936, overlap 1028936 1028976 ACCGAACTCAGCCGA CTGCTGCGGCCTTCTTCGGCG-CG-CGC TTGC GCGGCGTCGCCGTGGC-GGCCGCGGCAG TCTTCTTCGCCGACG uvrA 1031944 - 1028933 - | excinuclease ABC subunit A TERM 338 1032274 - 1032243 - g 78 -10.2 -4.19238 | gap 1, overlap 1032269 TCCGCAACCGGAAAA TCCGTCCTCATCGAC GCC GCCAACGAGG-CGGA CCGCGTCAACCAACT RHA1_ro00970 1031967 - 1032770 + | hypothetical protein RHA1_ro00971 1032938 - 1033900 + | hypothetical protein RHA1_ro00972 1034060 - 1036342 + | helicase RHA1_ro00973 1036339 - 1036725 + | hypothetical protein RHA1_ro00974 1037191 - 1036739 - | hypothetical protein RHA1_ro00975 1038252 - 1037380 - | hypothetical protein TERM 339 1037437 - 1037412 - G 74 -14.7 -3.08679 | gap 1, overlap 1037427 CCTTGGGACCGAACA CGCCGGCGGGGA ACA CCCCCGCCG-CG ACGATCGCGTCGCGC uvrB 1040523 - 1038283 - | excinuclease ABC subunit B TERM 340 1039993 - 1040029 + gH 85 -16.5 -3.14564 | opp_overlap 1039968 1039965, overlap 1040009 1040019 1040020 CCGCGACAGCAGGCT CGACGTCGCCGAGTGGC GCA GTCGCTCGACGTCGTCG TTGATCGACGAGTCC RHA1_ro00977 1040522 - 1041040 + | hypothetical protein coaE 1042253 - 1041042 - | fused dephospho-CoA kinase/unknown domain-containing protein TERM 341 1042361 - 1042373 + r 71 -9.1 -3.7511 | opp_overlap 1042358 AAATACCACAGATGT CCGAC ACG GTCGG TTATGTTCTAGCGAA TERM 342 1042666 - 1042705 + r 71 -12.8 -3.03441 | opp_overlap 1042669, overlap 1042669 GGCCTCACCCCCACA CCACCGTGGCCCGACCTC CGGA GAGGTTGGGCCACAGTCA TGTTCGGACGTCCTG TERM 343 1042702 - 1042669 - R 89 -18.9 -2.62983 | opp_overlap 1042669 1042666 CTCACCCCCACACCA CCGTGGCCCGACCTC CGGA GAGGTTGGGCCACAG TCATGTTCGGACGTC TERM 344 1042669 - 1042702 + r 90 -18.9 -2.74192 | opp_overlap 1042669, overlap 1042666 CTCACCCCCACACCA CCGTGGCCCGACCTC CGGA GAGGTTGGGCCACAG TCATGTTCGGACGTC TERM 345 1042725 - 1042766 + r 100 -20.9 -3.6502 | gap 1, opp_overlap 1042727 1042732 CGGACGTCCTGCAAC GACG-AGACCCCGCCCCTGC AAT GCAGGCGCGGGGTCTTCGGC TTTGCCTGACGAGTC TERM 346 1042764 - 1042727 - R 100 -22.1 -2.71144 | gap 1, opp_overlap 1042725, overlap 1042732 GACGTCCTGCAACGA CG-AGACCCCGCCCCTGC AAT GCAGGCGCGGGGTCTTCG GCTTTGCCTGACGAG TERM 347 1042758 - 1042732 - R 93 -19.4 -2.86164 | opp_overlap 1042725, overlap 1042727 CCTGCAACGACGAGA CCCCGCCCCTGC AAT GCAGGCGCGGGG TCTTCGGCTTTGCCT rpsA 1044277 - 1042793 - | 30S ribosomal protein S1 TERM 348 1044930 - 1044953 + G 72 -13.8 -3.14132 | TCGAGGCCATGCGGG CGGGCGGCGC GACC GTGCCGCTCG TTCATGCGGGAGCCG RHA1_ro00980 1044527 - 1045420 + | hypothetical protein TERM 349 1045448 - 1045403 - T 100 -32.3 -3.53811 | overlap 1045441 TTCAGCTGCCGCAAA CCCGTGAGTACTTCTTAACCG CCCG CGGTTAAGAAGTACTCACGGG CCGGAGGCCACTACA RHA1_ro00981 1046220 - 1045459 - | ABC amino acid transporter, ATP-binding component RHA1_ro00982 1047209 - 1046217 - | ABC amino acid transporter, permease component TERM 350 1047105 - 1047141 + g 72 -14.4 -3.22091 | gap 1, opp_overlap 1047091 1047075, overlap 1047132 ACCGACGACGATCGC GGCGATCCAGCGGCCGG GCCG CCG-CAGCGGGATCGCC TTGATCGGTTCCGGT RHA1_ro00983 1048144 - 1047221 - | ABC transporter, substrate-binding component leuB2 1049396 - 1048299 - | 3-isopropylmalate dehydrogenase TERM 351 1049965 - 1049908 - gR 90 -15.6 -3.60296 | gap 2, opp_overlap 1049964, overlap 1049909 GACGGGGACGCCAAA CGCGAGTGGGTGGTCACGGCACCACCGT GATC ACGGTGGTGCCGTGACCGTCT-CG-GCG GCCTTGCGCGAAGAC TERM 352 1049967 - 1049909 - gR 75 -14.5 -2.75963 | gap 1, opp_overlap 1049964, overlap 1049908 ACGGGGACGCCAAAC GCGAGTG-GGTGGTCACGGCACCACCGT GATC ACGGTGGTGCCGTGACCGTCTCGGCGGC CTTGCGCGAAGACCG RHA1_ro00985 1049374 - 1049937 + | hypothetical protein RHA1_ro00986 1050840 - 1049938 - | transport protein RHA1_ro00987 1051025 - 1050837 - | hypothetical protein TERM 353 1051056 - 1051046 - g 71 -2.4 -4.57073 | GATGGTGCTGAAAAA GGTC GTC GTCC CGCTCATGCCGCTCA RHA1_ro00988 1051032 - 1052033 + | AraC family transcriptional regulator RHA1_ro00989 1052107 - 1052475 + | thioredoxin polA 1055239 - 1052495 - | DNA polymerase I TERM 354 1056463 - 1056440 - g 72 -13.2 -3.21276 | gap 1, overlap 1056438 TGCTGCTGCAGAAGA CGCGCATCGGC AAG GCC-ATGCGCG CGGTGTCCGACAACC RHA1_ro00991 1055998 - 1056837 + | ABC branched chain amino acid transporter, permease component RHA1_ro00992 1056842 - 1057831 + | ABC branched chain amino acid transporter, permease component RHA1_ro00993 1057824 - 1058843 + | ABC branched-chain amino acid transporter, ATP-binding component RHA1_ro00994 1058840 - 1059634 + | ABC branched-chain amino acid transport, ATP-binding component TERM 355 1059653 - 1059686 + T 100 -21.1 -2.76492 | opp_overlap 1059631 1059656, overlap 1059653 1059656 CGGTGGTTCCGGACA CGACTGTGGGCCAGG TTTC CCTGGCCCACAGTCC GTTTCAGGTGAGTGC TERM 356 1059653 - 1059687 + T 100 -20.9 -3.61178 | gap 1, opp_overlap 1059631 1059656, overlap 1059653 1059656 CGGTGGTTCCGGACA C-GACTGTGGGCCAGG TTTC CCTGGCCCACAGTCCG TTTCAGGTGAGTGCG TERM 357 1059683 - 1059656 - T 100 -21.4 -2.62184 | opp_overlap 1059653 1059653 1059656 TGGTTCCGGACACGA CTGTGGGCCAGG TTTC CCTGGCCCACAG TCCGTTTCAGGTGAG TERM 358 1059656 - 1059683 + T 100 -21.4 -2.65354 | opp_overlap 1059656, overlap 1059653 1059653 TGGTTCCGGACACGA CTGTGGGCCAGG TTTC CCTGGCCCACAG TCCGTTTCAGGTGAG RHA1_ro00995 1061026 - 1059704 - | branched chain amino acid ABC transporter RHA1_ro00996 1061753 - 1061193 - | TetR family transcriptional regulator RHA1_ro00997 1061865 - 1062704 + | short chain dehydrogenase RHA1_ro00998 1063367 - 1062747 - | response regulator TERM 359 1063565 - 1063607 + r 73 -14.2 -2.78816 | ACTGCCAGAATTTCT CGCGATTCGCAGGTCAGATG CAT TATCTGACCTGCGATTAGCA TCTCGTCCCCCGTCA RHA1_ro01000 1064089 - 1063634 - | hypothetical protein RHA1_ro01001 1064187 - 1064399 + | sigma factor, includes region 2 TERM 360 1064824 - 1064806 - f 71 -10.3 -3.64703 | CGCGCCCGAGGGAAA GGCCATG TCGGT CATGGCC TTCGCCGTCGCAGGT TERM 361 1064902 - 1064936 + F 93 -6.3 -5.24531 | gap 1, overlap 1064884 GCATCTGGGGCTCTT CCGCCGTCGACTGACG ACCC CG-CAGGTAGCGGCGG TTTTTTGTGCCCGAT RHA1_ro01002 1065021 - 1065524 + | hypothetical protein RHA1_ro01003 1065593 - 1066576 + | hypothetical protein RHA1_ro01004 1068377 - 1066590 - | ABC transporter, ATP-binding component RHA1_ro01005 1068824 - 1068576 - | hypothetical protein RHA1_ro01006 1069808 - 1068930 - | acyl-CoA thioesterase II pyk1 1071227 - 1069809 - | pyruvate kinase TERM 362 1071057 - 1071080 + g 95 -14.6 -4.11281 | gap 1 GACCGCCTTCCCCGT CGCGTCCGAGG CCG CC-CGGACGCG TTTGTAGTTCTCCTC RHA1_ro01008 1072767 - 1071265 - | glutamate synthase small subunit RHA1_ro01009 1077343 - 1072760 - | glutamate synthase large subunit TERM 363 1075640 - 1075670 + g 78 -13.3 -3.65812 | gap 1 CGGCAGCACGATCTG CCTGCACGACGCCG CGGT CGGC-TCGAGCAGG TTCTGTTCCGGACCC TERM 364 1077606 - 1077565 - R 100 -23.1 -3.53091 | opp_overlap 1077568, overlap 1077568 ATCCGGCCCCGGAAA GCACCGTGGCCCGTGTCGC ATCA GCAACACGGGCCACAGTTC GGTCGGGGATCGTCA TERM 365 1077603 - 1077568 - R 100 -23.4 -2.90496 | opp_overlap 1077568, overlap 1077565 CGGCCCCGGAAAGCA CCGTGGCCCGTGTCGC ATCA GCAACACGGGCCACAG TTCGGTCGGGGATCG TERM 366 1077568 - 1077603 + r 93 -19 -3.05816 | opp_overlap 1077568 1077565 CGGCCCCGGAAAGCA CCGTGGCCCGTGTCGC ATCA GCAACACGGGCCACAG TTCGGTCGGGGATCG RHA1_ro01010 1078461 - 1077619 - | hypothetical protein lgt 1079533 - 1078454 - | prolipoprotein diacylglyceryl transferase trpA 1080333 - 1079530 - | tryptophan synthase subunit alpha trpB1 1081649 - 1080330 - | tryptophan synthase subunit beta trpC 1082521 - 1081712 - | indole-3-glycerol-phosphate synthase RHA1_ro01015 1083255 - 1082608 - | hypothetical protein TERM 367 1082650 - 1082664 + g 70 -3.5 -4.46073 | CTGTCCGTCAACTTG GTCGA CAGGT TCGGC TTTCTTGTCTTCCAC trpE 1084895 - 1083309 - | anthranilate synthase component I TERM 368 1084497 - 1084461 - G 85 -17.2 -3.16564 | GTCGTAGCCGAGGAA GCCCACCATGCCGCCG GTCAG CGGCGGCAGGTCGGGC AGCCGCTCGGTGCGG bcp 1084955 - 1085419 + | bacterioferritin comigratory protein RHA1_ro01018 1086186 - 1085407 - | hypothetical protein RHA1_ro01019 1086366 - 1086875 + | MarR family transcriptional regulator RHA1_ro01020 1087062 - 1086883 - | tautomerase hisI 1087483 - 1087139 - | phosphoribosyl-AMP cyclohydrolase hisF 1088253 - 1087480 - | imidazole glycerol phosphate synthase subunit HisF suhB 1089083 - 1088250 - | inositol-1(or 4)-monophosphatase hisA 1089827 - 1089093 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase RHA1_ro01025 1090104 - 1089847 - | hypothetical protein hisH 1090736 - 1090101 - | imidazole glycerol phosphate synthase subunit HisH RHA1_ro01027 1091927 - 1090746 - | major facilitator transporter RHA1_ro01028 1092079 - 1091927 - | hypothetical protein hisB 1092707 - 1092093 - | imidazoleglycerol-phosphate dehydratase hisC1 1093846 - 1092704 - | histidinol-phosphate aminotransferase hisD 1095165 - 1093843 - | histidinol dehydrogenase TERM 369 1095274 - 1095294 + r 75 -12.5 -3.53012 | overlap 1095275 GCGCACCCCATTTTC ACCGGTCGG CGG CCGACCGGG TTTCCGCCGACACCG TERM 370 1095275 - 1095293 + r 78 -16 -2.71712 | overlap 1095274 CGCACCCCATTTTCA CCGGTCGG CGG CCGACCGG GTTTCCGCCGACACC RHA1_ro01032 1096333 - 1095272 - | hypothetical protein RHA1_ro01033 1098388 - 1096445 - | acyl-CoA dehydrogenase bglA 1098476 - 1099753 + | beta-glucosidase RHA1_ro01035 1099814 - 1100419 + | amino acid efflux protein nadC 1101340 - 1100471 - | nicotinate-nucleotide pyrophosphorylase nadB 1102908 - 1101340 - | L-aspartate oxidase nadA 1103957 - 1102905 - | quinolinate synthetase RHA1_ro01039 1104021 - 1104746 + | hypothetical protein RHA1_ro01040 1105365 - 1104766 - | transcriptional regulator RHA1_ro01041 1105449 - 1106261 + | short-chain dehydrogenase RHA1_ro01042 1106982 - 1106251 - | hypothetical protein RHA1_ro01043 1108245 - 1107145 - | biotin synthase TERM 371 1108245 - 1108215 - GH 100 -11.2 -4.75174 | opp_overlap 1108214 1108222, overlap 1108216 GACGGAACCGAAAAA TTGAACACCGTACA AGT TGAACGGTGTTCAC GTTAGATCCGTGGTG TERM 372 1108244 - 1108216 - GH 86 -14.7 -3.44381 | opp_overlap 1108214 1108222, overlap 1108215 ACGGAACCGAAAAAT TGAACACCGTACA AGT TGAACGGTGTTCA CGTTAGATCCGTGGT RHA1_ro01044 1108238 - 1108942 + | TetR family transcriptional regulator RHA1_ro01045 1109020 - 1110150 + | hypothetical protein TERM 373 1110781 - 1110747 - g 77 -15 -3.16742 | CGTAACGCTTACGAA CCGACTATGACGGCGA TGG CCGCCGTCATGGTCGC GGAAGTCGGCCGCAC RHA1_ro01046 1110204 - 1110947 + | GntR family transcriptional regulator RHA1_ro01047 1111064 - 1111615 + | fatty acid hydroxylase sdhB1 1112426 - 1111677 - | fumarate reductase iron-sulfur subunit sdhA 1114362 - 1112428 - | succinate dehydrogenase flavoprotein subunit RHA1_ro01050 1115208 - 1114384 - | succinate dehydrogenase RHA1_ro01051 1115489 - 1115205 - | hypothetical protein RHA1_ro01052 1115490 - 1116449 + | cell wall protein bioD 1117155 - 1116460 - | dithiobiotin synthetase bioF 1118303 - 1117152 - | 8-amino-7-oxononanoate synthase TERM 374 1118330 - 1118343 + H 88 -9.5 -4.65916 | opp_overlap 1118308 TGAACGGTGTTCAAC CCGGG TGGG CCCGG TTTTCTTCGAGTGGC bioA1 1118372 - 1119667 + | adenosylmethionine--8-amino-7-oxononanoate transaminase RHA1_ro01056 1119719 - 1121980 + | glycogen debranching protein RHA1_ro01057 1121994 - 1124351 + | (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase RHA1_ro01058 1124406 - 1125347 + | NADPH:quinone reductase RHA1_ro01059 1125991 - 1125365 - | TetR family transcriptional regulator RHA1_ro01060 1126271 - 1126083 - | hypothetical protein RHA1_ro01061 1126270 - 1126530 + | hypothetical protein RHA1_ro01062 1126571 - 1128304 + | 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase RHA1_ro01063 1129836 - 1128271 - | major facilitator superfamily multidrug transporter RHA1_ro01064 1129962 - 1130486 + | TetR family transcriptional regulator ilvA 1131843 - 1130491 - | threonine dehydratase RHA1_ro01066 1133662 - 1131887 - | pyruvate dehydrogenase RHA1_ro01067 1134148 - 1133714 - | hypothetical protein RHA1_ro01068 1134320 - 1134556 + | hypothetical protein dnaE 1138096 - 1134560 - | DNA polymerase III subunit alpha TERM 375 1135873 - 1135883 + g 81 -2.4 -5.07486 | CGTACGCCTCCTCCA GCAC CGA GAGC TTTTTCTTACCCATG RHA1_ro01070 1139112 - 1138195 - | RarD family permease TERM 376 1138448 - 1138438 - G 70 -8.2 -3.82084 | overlap 1138439 GCCGAACAGCAACAA CGGC AGG GCCG TCACCGGTCCCGCGG RHA1_ro01071 1139786 - 1139109 - | hypothetical protein RHA1_ro01072 1140696 - 1139788 - | pseudouridylate synthase TERM 377 1140381 - 1140426 + g 70 -8.2 -3.85698 | gap 2, overlap 1140382 1140422 1140423 GACCGCCGATCACCG TCGGACCG-GTC-CAGCCCACG CTGG CGTGGGCGGCGACACCGACCGG TTTGTCGACGGCGAC TERM 378 1140422 - 1140464 + g 74 -12.6 -3.65902 | overlap 1140382 1140381 1140423 TGGGCGGCGACACCG ACCGGTTTGTCGACGGCGAC CAC GTCGTCGTCGGCGTACAGGA TTTCCATGCCCTCGA TERM 379 1140423 - 1140463 + g 74 -16.1 -2.79327 | overlap 1140382 1140381 1140422 GGGCGGCGACACCGA CCGGTTTGTCGACGGCGAC CAC GTCGTCGTCGGCGTACAGG ATTTCCATGCCCTCG RHA1_ro01073 1141307 - 1140711 - | signal peptidase II RHA1_ro01074 1141359 - 1142312 + | hypothetical protein RHA1_ro01075 1142312 - 1143064 + | hypothetical protein TERM 380 1143119 - 1143079 - T 100 -26.4 -3.1739 | gap 1, overlap 1143082 AGACCAGGCCACGAA CGACCGATGCCGGTGTCCC CGAG GGGACACCGGCATCGGT-G CCAGAACGCGGCGAT TERM 381 1143117 - 1143082 - T 100 -29.2 -2.78547 | overlap 1143079 CCAGGCCACGAACGA CCGATGCCGGTGTCCC CGAG GGGACACCGGCATCGG TGCCAGAACGCGGCG RHA1_ro01076 1143664 - 1143164 - | hypothetical protein RHA1_ro01077 1145166 - 1143817 - | DNA polymerase IV ileS 1148365 - 1145198 - | isoleucyl-tRNA synthetase RHA1_ro01079 1148878 - 1148627 - | hypothetical protein RHA1_ro01080 1149773 - 1148928 - | cell division initiation protein RHA1_ro01081 1150178 - 1149876 - | hypothetical protein TERM 382 1150090 - 1150040 - G 83 -8.4 -4.62069 | gap 1, opp_overlap 1150070 CGGTGACCGTAAAAA TCGCCTCGAGAATGACGACCA CGACGCCGGT TGGTCGCCAGTCTCGTG-CGA AGGTCCGTACGAACT TERM 383 1150261 - 1150216 - R 86 -10.3 -4.25104 | gap 1, opp_overlap 1150253 TCCGGCCGATCAAAA CGAGCCGCG-TGGCCAGGGC TTTCTCC GCCACAGCCGCCGCGGCCCG CGTCGTTACGGACGT RHA1_ro01082 1150989 - 1150312 - | hypothetical protein RHA1_ro01083 1151800 - 1151075 - | hypothetical protein RHA1_ro01084 1152590 - 1151847 - | hypothetical protein RHA1_ro01085 1153786 - 1152587 - | cell division protein FtsZ RHA1_ro01086 1154642 - 1154004 - | cell division protein, FtsQ murC 1156399 - 1154888 - | UDP-N-acetylmuramate--L-alanine ligase murG 1157544 - 1156396 - | N-acetylglucosaminyl transferase TERM 384 1156883 - 1156836 - G 74 -14 -3.28712 | gap 1, opp_overlap 1156837, overlap 1156837 CGTGTGCGTGCAGAA CGGCCACACCGGCCGCGGC-GAG CGA CTCCGCCGCGCCCGAGACGGCCT CGTTGAGCGACCGCG TERM 385 1156882 - 1156837 - G 77 -17.5 -2.57132 | gap 1, opp_overlap 1156837, overlap 1156836 GTGTGCGTGCAGAAC GGCCACACCGGCCGCGGC-GAG CGA CTCCGCCGCGCCCGAGACGGCC TCGTTGAGCGACCGC RHA1_ro01089 1159076 - 1157541 - | cell division protein, FtsW murD 1160572 - 1159073 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase mraY 1161656 - 1160577 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 386 1161189 - 1161153 - G 100 -20.9 -3.42996 | CAGGAGGTAGCAGAA CGCGACGAACACGACGG AGC CCATCGTGACCGTCGCG ATGTCACGCACGTAC murF 1163167 - 1161653 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 1164777 - 1163164 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase RHA1_ro01094 1166797 - 1164947 - | peptidoglycan glycosyltransferase TERM 387 1166756 - 1166738 - G 82 -13.8 -3.75153 | opp_overlap 1166742, overlap 1166707 1166739 TTGCCTGAACGGAAA GGACGCCG AAC CGGCGCCC TTGGGGCGCCGGGGA RHA1_ro01095 1167471 - 1166794 - | hypothetical protein mraW 1168484 - 1167468 - | S-adenosyl-methyltransferase TERM 388 1168632 - 1168608 - R 71 -4.2 -4.54727 | opp_overlap 1168607 TGCCCGAAATGAAAA CCTGGCGC TGGGGAAGT GCGTCAGG GTTCCGTCGGACAGA RHA1_ro01097 1169112 - 1168681 - | cell division protein MraZ TERM 389 1169584 - 1169546 - R 100 -27.6 -2.87931 | overlap 1169549 CCGAGCCCCGACACA GCAGTGGCGGCGTGGCAT CAC ATGCCACGCCGCCACTGG GCTGCTGAGCGGGTA TERM 390 1169581 - 1169549 - R 100 -27.9 -2.6927 | overlap 1169546 AGCCCCGACACAGCA GTGGCGGCGTGGCAT CAC ATGCCACGCCGCCAC TGGGCTGCTGAGCGG RHA1_ro01098 1170031 - 1169603 - | hypothetical protein RHA1_ro01099 1170728 - 1170264 - | hypothetical protein RHA1_ro01100 1170712 - 1171509 + | hypothetical protein RHA1_ro01101 1171506 - 1173080 + | beta-carotene ketolase RHA1_ro01102 1173077 - 1173889 + | caratenoid biosynthesis protein RHA1_ro01103 1173921 - 1174634 + | lipoprotein RHA1_ro01104 1174631 - 1175791 + | glycosyl transferase RHA1_ro01105 1176791 - 1175784 - | 5,10-methylenetetrahydrofolate reductase TERM 391 1176723 - 1176690 - G 82 -10.9 -4.19704 | overlap 1176691 GAACTCGACGGAAAA GGGGACCCGGCCGTC GCTG GACGACCGGATCCGG TCGACGATGGACGGA TERM 392 1176722 - 1176691 - G 72 -14.4 -3.11341 | overlap 1176690 AACTCGACGGAAAAG GGGACCCGGCCGTC GCTG GACGACCGGATCCG GTCGACGATGGACGG RHA1_ro01106 1177044 - 1178036 + | geranylgeranyl pyrophosphate synthase TERM 393 1179141 - 1179119 - g 79 -18.4 -2.62184 | CGTTCGCGGAGATCA CCGCCCGCGC GGG GCGCGGACGG CTGATGACGGACCCG RHA1_ro01107 1178047 - 1179672 + | phytoene dehydrogenase RHA1_ro01108 1179785 - 1181389 + | hypothetical protein TERM 394 1182014 - 1182033 + G 70 -12.2 -3.28924 | CGACGAATTGGCCGC GTTCGGTG TCGA CACCGAAC TTCTCGCGCACAGTC RHA1_ro01109 1181397 - 1182338 + | phytoene synthase RHA1_ro01110 1182714 - 1182346 - | hypothetical protein RHA1_ro01111 1182825 - 1184843 + | protein kinase aroG 1186276 - 1184891 - | 3-deoxy-7-phosphoheptulonate synthase RHA1_ro01113 1186810 - 1186319 - | hypothetical protein RHA1_ro01114 1186878 - 1188200 + | integral membrane protein RHA1_ro01115 1188972 - 1188214 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 395 1188256 - 1188304 + g 81 -12.1 -3.95725 | CGTGACGGTGGTGGC GTCGCTCGCAGGCGCCACATCGG CCA CCGAGGCGTCGGCGGCGGGCGCC TTCTTCTTCAGCGTT RHA1_ro01116 1190116 - 1189103 - | glucokinase RHA1_ro01117 1190570 - 1190169 - | hypothetical protein RHA1_ro01118 1191610 - 1190567 - | arsenite transporting ATPase TERM 396 1190808 - 1190828 + g 74 -12.5 -3.61398 | GCCCCCGATTCCAGC CCCACCCGC ACC GCAGGTGGG TTCTTCCCCAGCACC TERM 397 1191706 - 1191682 - R 77 -15.7 -2.64616 | opp_overlap 1191697, overlap 1191687 GGTCGAGCGAGACGA GCAGAGTCCGG TGT CCGGCCTCTGC GGCCGCCTGTGCCGT RHA1_ro01119 1192242 - 1191805 - | hypothetical protein RHA1_ro01120 1192769 - 1192395 - | hypothetical protein RHA1_ro01121 1192938 - 1194749 + | long-chain-fatty-acid--CoA ligase TERM 398 1194809 - 1194751 - T 77 -15.6 -2.61274 | gap 3, overlap 1194750 1194795 TCTACGCCAAGTAAT GCCTTCGGCTCGTGAGTACTTGTCAACCG CCCG CGGTTGACAAGTACTCACGGGC-G--GTC ACGCAAGTAATGCCT RHA1_ro01122 1195704 - 1194808 - | glycosyltransferase RHA1_ro01123 1197340 - 1195979 - | hypothetical protein RHA1_ro01124 1198442 - 1197390 - | protein p60 precursor TERM 399 1198746 - 1198704 - R 87 -18.7 -2.70932 | gap 1, overlap 1198706 CCTGGGGCGCAACGA CATCGAGGGTGGGTTCGAAT CGTG ATTCGAACC-ACCCTCGGTG GTCGTGCGAGATCCT TERM 400 1198744 - 1198706 - R 80 -15.5 -2.90075 | gap 1, overlap 1198704 TGGGGCGCAACGACA TCGAGGGTGGGTTCGAAT CGTG ATTCGAACC-ACCCTCGG TGGTCGTGCGAGATC RHA1_ro01125 1199064 - 1198822 - | hypothetical protein TERM 401 1198997 - 1199032 + g 74 -14.7 -3.05816 | gap 1, overlap 1199027 TGCGACACGGGAGTG CCTGCCGC-CGCCTGC GCGTA GCTGGTGCGCGGCAGG TTCAGTCCGGCCTGC RHA1_ro01126 1200013 - 1201779 + | hypothetical protein RHA1_ro01127 1201776 - 1202051 + | transcriptional regulator trpD 1203149 - 1202061 - | anthranilate phosphoribosyltransferase RHA1_ro01129 1203663 - 1203193 - | hypothetical protein RHA1_ro01130 1203662 - 1204402 + | cytochrome c oxidase RHA1_ro01131 1204569 - 1205318 + | ubiquinol-cytochrome c reductase cytochrome c subunit RHA1_ro01132 1205315 - 1206457 + | ubiquinol-cytochrome c reductase iron-sulfur subunit RHA1_ro01133 1206454 - 1208136 + | ubiquinol-cytochrome c reductase cytochrome b subunit TERM 402 1208152 - 1208193 + T 100 -30.4 -2.88861 | opp_overlap 1208160 CCTCGCCTCCGCACT CGAGCAGAGCCCCGAACC ACTTCC GGTTCGGGGCTCTGCTCG TCTGTGGGCGTCGTG RHA1_ro01134 1209089 - 1208133 - | transport protein TERM 403 1208185 - 1208160 - G 74 -16.9 -2.79796 | opp_overlap 1208152 CCGCACTCGAGCAGA GCCCCGAACCA CTTC CGGTTCGGGGC TCTGCTCGTCTGTGG TERM 404 1208479 - 1208460 - G 84 -16.4 -3.44527 | overlap 1208461 CACCGACCACCAGAA CGCCGCCG CCGG CGGCGGCG ACACCTGTCCGGCGC TERM 405 1208481 - 1208461 - G 73 -16.1 -2.66395 | overlap 1208460 ACCGACCACCAGAAC GCCGCCGCC GGC GGCGGCGAC ACCTGTCCGGCGCAC TERM 406 1209107 - 1209151 + H 89 -10.3 -4.46926 | opp_overlap 1209107 1209112 CTGACCACCACCCAA GTAAACAGATCGGTATA CCTCCCTAACC TATACCGATCTGTATAC TTTTGTCATGGAATC TERM 407 1209146 - 1209112 - H 73 -9.4 -3.94002 | opp_overlap 1209107, overlap 1209107 CACCACCCAAGTAAA CAGATCGGTATACCTC CCT AACCTATACCGATCTG TATACTTTTGTCATG RHA1_ro01135 1209159 - 1209761 + | TetR family transcriptional regulator TERM 408 1209810 - 1209772 - T 100 -29 -3.97947 | opp_overlap 1209772, overlap 1209774 GTTAGGGACGACAAA GAGGAGGCGCCGAATCCC ACC GGGATTCGGCGCCTCCGC TGTTCGAATATGGGT TERM 409 1209772 - 1209810 + T 100 -29 -3.0814 | opp_overlap 1209772 1209774 GTTAGGGACGACAAA GAGGAGGCGCCGAATCCC ACC GGGATTCGGCGCCTCCGC TGTTCGAATATGGGT TERM 410 1209808 - 1209774 - T 100 -30.2 -3.5812 | opp_overlap 1209772, overlap 1209772 TAGGGACGACAAAGA GGAGGCGCCGAATCCC ACC GGGATTCGGCGCCTCC GCTGTTCGAATATGG RHA1_ro01136 1210246 - 1209830 - | hypothetical protein RHA1_ro01137 1211355 - 1210288 - | cytochrome c oxidase subunit II TERM 411 1213286 - 1213323 + G 71 -10.6 -3.73068 | gap 2 GGGCGAAGCTGGGCT TCCCGGTGCCGCTGCGGC ACTG GCTGC-GCGGCAC-GGAA TTGTTCGATTGGGCA asn1 1211617 - 1213542 + | asparagine synthase (glutamine-hydrolyzing) TERM 412 1213597 - 1213611 + T 71 -12.8 -3.01712 | opp_overlap 1213591 CGTCAACCACTCACG GGCGGC GGA GCCGCC TGTTACGGCAGGAGG RHA1_ro01139 1214588 - 1213614 - | adenosine kinase TERM 413 1214301 - 1214287 - G 70 -8.5 -3.83026 | GTGGTGCACACGAAA CGCGC GGTGT GCGCG GTGGTCGAGATCCGG TERM 414 1214736 - 1214702 - R 100 -22.3 -5.52384 | gap 1, opp_overlap 1214693 1214702 CGGGCACGAAAAAAA GTCTGACGCGGCAGCC GGTC GGC-GCCGCGTCAGAC TTGTCGATTCAGTTG TERM 415 1214702 - 1214736 + r 100 -22.3 -3.43564 | gap 1, opp_overlap 1214702, overlap 1214693 CGGGCACGAAAAAAA GTCTGACGCGGCAGCC GGTC GGC-GCCGCGTCAGAC TTGTCGATTCAGTTG RHA1_ro01140 1215118 - 1214768 - | hypothetical protein RHA1_ro01141 1216333 - 1215260 - | glycerate kinase RHA1_ro01142 1216341 - 1217078 + | hypothetical protein RHA1_ro01143 1217405 - 1217082 - | hypothetical protein cobU 1217398 - 1218045 + | bifunctional adenosylcobinamide kinase/ adenosylcobinamide phosphate guanylyltransferase cobT 1218042 - 1219160 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobS 1219163 - 1219903 + | cobalamin synthase ilvE1 1221062 - 1219923 - | branched-chain amino acid aminotransferase gcvT 1222190 - 1221090 - | glycine cleavage system aminomethyltransferase T RHA1_ro01149 1222312 - 1223829 + | leucyl aminopeptidase TERM 416 1223829 - 1223849 + T 71 -8.1 -4.14257 | opp_overlap 1223827 1223813, overlap 1223825 CGCCGCCAACGGATA GGCGCTCCG CGC CCGTGCGCC TTTCTCGTTGTTGCA RHA1_ro01150 1224234 - 1223896 - | oxidoreductase TERM 417 1225523 - 1225478 - g 85 -15.9 -3.65046 | overlap 1225482 CGCCGAGGCCAAGAA GGCACCGGCCGCCGCTGCCGC GCCT GCTGCCGCACCGGCCGCCGCC GCTGCTCCCGCAGCC RHA1_ro01151 1224564 - 1226294 + | dihydrolipoamide acetyltransferase RHA1_ro01152 1226387 - 1227277 + | hypothetical protein TERM 418 1227776 - 1227760 - g 74 -13.7 -3.28712 | TGCGTCCTTCGACAA CGGGCAG TGG CTGCCCG AGCGCAAGGTGGCGG lipB 1227326 - 1228102 + | lipoyltransferase RHA1_ro01154 1228125 - 1229165 + | lipoyl synthase TERM 419 1229310 - 1229292 - g 73 -7.3 -4.16371 | overlap 1229308 CAGCAAAGAAGCAAA GGCAGCC GCCAA GGCAGCC CGCAGGCAGGCGTCG RHA1_ro01155 1229239 - 1229997 + | hypothetical protein RHA1_ro01156 1230539 - 1230063 - | hypothetical protein TERM 420 1230678 - 1230660 - H 78 -3 -4.87133 | overlap 1230661 ACGGGCGAAACAAAA GGTTGACC AGC GGGCAACA CCAAGTCCTTACCGT glnA1 1230751 - 1232187 + | glutamate--ammonia ligase TERM 421 1232204 - 1232253 + T 100 -33.1 -3.36327 | TCGGTAGCTTCAGTC GAGCCCACTCGCGCCGCGATC ACGACACC GATCGCGGCGCGGGTGGGCTC TTCTGCGTCCGGTCG RHA1_ro01158 1232988 - 1232302 - | hypothetical protein TERM 422 1232623 - 1232659 + g 78 -5.8 -4.57569 | gap 2, overlap 1232636 TGGATCCGGATCGAC GGACCACGCCCGGCGCAG GTC CT-CGGCGTGCG-GGTTC TTTTTCACCACGTAG TERM 423 1233158 - 1233124 - H 76 -14.2 -3.08464 | opp_overlap 1233120 GTATGATCCAGGGAA CCGACCACACGGACCG TTG CGAAACGTGCGGTCGG AGCCTTTCGGGATAC RHA1_ro01159 1233221 - 1234474 + | major facilitator superfamily multidrug resistance protein RHA1_ro01160 1234481 - 1235461 + | hypothetical protein RHA1_ro01161 1235553 - 1236209 + | ABC quaternary amine transporter, permease component RHA1_ro01162 1236202 - 1237428 + | ABC quaternary amine transporter, ATP-binding component TERM 424 1237793 - 1237838 + G 76 -13.3 -3.50492 | gap 1, overlap 1237776 GGTGCTGCTCTTCCT CGCGACGGGGACCACC-GGATT CTG GATCGGGGTGCTCCCCATCGCG TTCTACTCTCTCCTG RHA1_ro01163 1237425 - 1238207 + | quaternary amine ABC transporter permease RHA1_ro01164 1238207 - 1239190 + | glycine betaine/carnitine/choline binding protein precursor RHA1_ro01165 1240159 - 1239194 - | transmembrane protein glnE 1243170 - 1240156 - | glutamate--ammonia-ligase adenylyltransferase TERM 425 1240538 - 1240585 + g 77 -15.4 -3.14344 | gap 1 CCGAGTTTGGTGTGC GTCGCGGGGTCGGCGCCGCGCGG CAA CCGCTCGGAGTCGA-CGCGCGCC TTGATGCGCCGGATC glnA2 1244519 - 1243179 - | glutamate--ammonia ligase RHA1_ro01168 1246336 - 1244636 - | proteinase TERM 426 1246889 - 1246914 + G 71 -11.8 -3.57144 | overlap 1246903 CACGTCGGGTTCACC CCGCAGAGCG TGAACT CGCTCGGCGG TTTCCGCGTGCAGGG panB 1246388 - 1247257 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 427 1247726 - 1247752 + G 74 -13.7 -3.28791 | ACCGCGCTGGAGATC CCCGATCTGGC GTCCG GCCTGATCGGG TTCTGAGGCCGACGT RHA1_ro01170 1247303 - 1247758 + | hypothetical protein RHA1_ro01171 1247766 - 1248731 + | prolyl aminopeptidase RHA1_ro01172 1250136 - 1248736 - | ribonuclease R RHA1_ro01173 1250352 - 1250167 - | hypothetical protein TERM 428 1250631 - 1250658 + H 100 -24.2 -3.12351 | AGTCGATACCTCGAA GCCCCCGCCGGA CGTG TCCGGCGGGGGC TTCGCTGTGAAGGGG RHA1_ro01174 1250756 - 1251202 + | hypothetical protein RHA1_ro01175 1251199 - 1251618 + | hypothetical protein RHA1_ro01176 1251641 - 1252264 + | homoserine/ homoserine lactone efflux protein RHA1_ro01177 1253076 - 1252273 - | hydrolase TERM 429 1253526 - 1253572 + G 81 -7.9 -4.53303 | gap 1, overlap 1253530 CTTACCGCACCGTTT CACCCTGACCGACGCCACACCC CGGA GGATGTGGCATCGG-CGGTCTG TTTTCTGTGGCACTG RHA1_ro01178 1253221 - 1253616 + | hypothetical protein RHA1_ro01179 1253748 - 1254299 + | hypothetical protein TERM 430 1255520 - 1255578 + G 82 -18.5 -2.90075 | gap 1, opp_overlap 1255564 CCGCGGTCGTTGCCC TCT-GGGCCTGTGAGTACTTGTTAACCG CGGG CGGTTAACAAGTACTCACAGGTGGGAGG TGTCGTTCACCAGCC RHA1_ro01180 1254307 - 1255557 + | arsenic efflux pump protein RHA1_ro01181 1256671 - 1255565 - | bifunctional RNase H/acid phosphatase TERM 431 1256389 - 1256421 + g 81 -18.5 -2.78384 | opp_overlap 1256389 GCTGCAGCGGAATCA TGTCCGGGTGCTTGA CCT TCCAGCGCCCGGACA TCTGCTCGACCACCA TERM 432 1256421 - 1256389 - G 74 -16.3 -2.73364 | opp_overlap 1256389 GCTGCAGCGGAATCA TGTCCGGGTGCTTGA CCT TCCAGCGCCCGGACA TCTGCTCGACCACCA TERM 433 1256485 - 1256525 + g 74 -11.1 -3.72324 | gap 1 CGCCGAGTTCGGCGG CGGCGTCGAG-ACCGGCG ATCAGG CCCCGGTACTCGGCGACG TTGTTGGTGGCGATC RHA1_ro01182 1257405 - 1256668 - | hypothetical protein TERM 434 1257207 - 1257259 + g 83 -19.9 -2.72344 | overlap 1257227 CCTCACCTTCGAGTT TGCGGATGTCGCGGTCGAGATCGTC GAG GACGATTTCGACGGCCACGGCCGCG TCCTTACGGGTGACG RHA1_ro01183 1258644 - 1257505 - | hypothetical protein RHA1_ro01184 1259711 - 1258641 - | hypothetical protein RHA1_ro01185 1259705 - 1260406 + | phosphoglycolate phosphatase RHA1_ro01186 1260414 - 1260866 + | protein-tyrosine-phosphatase cobD 1262799 - 1261732 - | cobalamin biosynthesis protein RHA1_ro01187 1260910 - 1261791 + | hypothetical protein RHA1_ro01189 1263460 - 1263651 + | hypothetical protein RHA1_ro01190 1263844 - 1263656 - | hypothetical protein RHA1_ro01191 1263932 - 1264495 + | hypothetical protein RHA1_ro01192 1264488 - 1264748 + | hypothetical protein TERM 435 1264848 - 1264791 - T 100 -22.1 -3.04792 | gap 1, opp_overlap 1264805, overlap 1264805 GCAGCACGGTGAACA CCGACACGGAGAAAGCCCCGACCCGCGC GGA ACGCAGATCGGGGCTTTGCCC-TGACGG TGGGCGCGGAGGGTT TERM 436 1264835 - 1264805 - T 100 -19 -3.9534 | opp_overlap 1264805, overlap 1264791 ACCGACACGGAGAAA GCCCCGACCCGCGC GGA ACGCAGATCGGGGC TTTGCCCTGACGGTG TERM 437 1264805 - 1264835 + T 84 -13.9 -3.60296 | opp_overlap 1264805 1264791 ACCGACACGGAGAAA GCCCCGACCCGCG CGGAA CGCAGATCGGGGC TTTGCCCTGACGGTG TERM 438 1264946 - 1264926 - T 85 -16.9 -3.03771 | CTACACGCCCGAACA TCCGGCGAG AAC CTCGCCGGA TGCGCATCAGGACTC RHA1_ro01194 1265417 - 1264953 - | thioredoxin-dependent thiol peroxidase RHA1_ro01195 1265883 - 1265458 - | hypothetical protein TERM 439 1265884 - 1265896 + r 77 -4.7 -4.64676 | overlap 1265862 1265875 CGCCGCGGCGACCAC GGTGG GGT CCTCC TTTTGTTGACGGTGC TERM 440 1265975 - 1265997 + r 74 -2 -4.83169 | opp_overlap 1265963 1265961 ACATGCTCGAACGCT TTCGCG CAAGCCGACCA CGCGAA TTTTTCTCAGAAAGT RHA1_ro01196 1266588 - 1266052 - | hypothetical protein TERM 441 1267369 - 1267391 + G 83 -8.4 -4.56597 | gap 1 TCCAGGGCCACGCCT CGC-CGGGC ATCTAC GCCCGCGCG TTTTTGGAGGGGCGG aceE 1266813 - 1269668 + | pyruvate dehydrogenase subunit E1 TERM 442 1269678 - 1269733 + F 100 -31.5 -3.71487 | gap 3, overlap 1269681 GCGTAACGCCGAGAT CCT-C-CCCACCGCCGCCCGTGT-GTCC GTC GGACTACACGGGCGGCGGTGGGCGTAGG TTCTTGACTATGGTC TERM 443 1269681 - 1269729 + F 100 -32 -2.66869 | gap 2, overlap 1269678 TAACGCCGAGATCCT C-CCCACCGCCGCCCGTGT-GTCC GTC GGACTACACGGGCGGCGGTGGGCG TAGGTTCTTGACTAT RHA1_ro01198 1269743 - 1271014 + | hypothetical protein fabD 1271142 - 1272059 + | [acyl-carrier protein] S-malonyltransferase acpP 1272166 - 1272477 + | acyl carrier protein fabF 1272486 - 1273736 + | 3-oxoacyl-(acyl carrier protein) synthase II pccB1 1273831 - 1275264 + | propionyl-CoA carboxylase beta subunit TERM 444 1275286 - 1275313 + T 100 -18.4 -4.14739 | opp_overlap 1275286 CTCTGGTCGAGAGAA GGCCCCCGCCGT TGTT GTGGCGGGGGCC TTTTCGCGTCCGTGA TERM 445 1275313 - 1275286 - T 91 -17 -3.48276 | opp_overlap 1275286 CTCTGGTCGAGAGAA GGCCCCCGCC GTTGTTGT GGCGGGGGCC TTTTCGCGTCCGTGA RHA1_ro01203 1275846 - 1275337 - | hypothetical protein RHA1_ro01204 1276790 - 1275972 - | beta lactamase RHA1_ro01205 1277963 - 1276836 - | alcohol dehydrogenase RHA1_ro01206 1278592 - 1278074 - | hypothetical protein RHA1_ro01207 1278632 - 1279492 + | hypothetical protein RHA1_ro01208 1279991 - 1279509 - | hypothetical protein RHA1_ro01211 1281717 - 1280548 - | hypothetical protein RHA1_ro01210 1280200 - 1280607 + | hypothetical protein TERM 446 1281851 - 1281793 - fH 89 -19 -2.52543 | opp_overlap 1281810, overlap 1281810 1281825 ACCTGTCCGAATTGA CCGGGCGCAGCA-GAAAACCCCGCCCGG ATCAA CCGGACGGGGTTTCGATGCTCC-CCCGG CTGGACTCGAACCAG TERM 447 1281810 - 1281834 + FH 84 -14.2 -3.68351 | opp_overlap 1281810 1281793 1281825 GGGCGCAGCAGAAAA CCCCGCCCGG ATCAA CCGGACGGGG TTTCGATGCTCCCCC TERM 448 1281834 - 1281810 - fH 100 -16.4 -4.46212 | opp_overlap 1281810, overlap 1281793 1281825 GGGCGCAGCAGAAAA CCCCGCCCGG ATCAA CCGGACGGGG TTTCGATGCTCCCCC RHA1_ro01213 1282054 - 1282302 + | hypothetical protein dnaG 1284252 - 1282318 - | DNA primase RHA1_ro01215 1285506 - 1284301 - | lipase precursor RHA1_ro01216 1286892 - 1285594 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein RHA1_ro01217 1287592 - 1286900 - | hypothetical protein RHA1_ro01218 1287662 - 1289722 + | sensory rhodopsin II transducer RHA1_ro01219 1290488 - 1289880 - | hypothetical protein TERM 449 1290569 - 1290525 - R 80 -14.5 -3.16742 | overlap 1290528 GCGAATCCTGACGAA CT-ATCTGACCGTCACCTGCG ACGCG CGCAGGTGACGG-CGGATCAG GAACCGATGAGGCGC TERM 450 1290565 - 1290528 - R 81 -16.4 -2.78395 | gap 1, overlap 1290525 AATCCTGACGAACTA TCTGACCGTCACCTGCG ACGCG CGCAGGTGACGG-CGGA TCAGGAACCGATGAG glyS 1291957 - 1290566 - | glycyl-tRNA synthetase RHA1_ro01221 1291984 - 1292523 + | arsenical resistance operon repressor fur 1292529 - 1292954 + | Fe(3+) uptake regulation protein RHA1_ro01223 1293359 - 1292958 - | hypothetical protein RHA1_ro01224 1294051 - 1293356 - | di-trans,poly-cis-decaprenylcistransferase recO 1294946 - 1294131 - | DNA repair protein RecO RHA1_ro01226 1295967 - 1295005 - | hydrolase RHA1_ro01227 1296347 - 1296057 - | hypothetical protein kdpE 1297118 - 1296438 - | response regulator, two-component system kdpD 1299652 - 1297115 - | histidine sensor kinase, two-component system kdpC 1300310 - 1299660 - | potassium-transporting ATPase kdpB 1302422 - 1300317 - | potassium-transporting ATPase B chain kdpA 1304134 - 1302419 - | potassium-transporting ATPase subunit A RHA1_ro01233 1304376 - 1304134 - | hypothetical protein RHA1_ro01234 1305103 - 1304474 - | hypothetical protein RHA1_ro01235 1305182 - 1306630 + | transcriptional regulator RHA1_ro01236 1306670 - 1308115 + | amidase RHA1_ro01237 1308119 - 1308682 + | transcriptional regulator era 1309651 - 1308734 - | GTP-binding protein Era RHA1_ro01239 1309976 - 1309644 - | hypothetical protein RHA1_ro01240 1311141 - 1309969 - | Mg2+/Co2+ transporter RHA1_ro01241 1311853 - 1311311 - | putative metalloprotease phoH 1312963 - 1311890 - | phosphate starvation-induced protein RHA1_ro01243 1313395 - 1313072 - | hypothetical protein RHA1_ro01244 1314279 - 1313518 - | lipase/esterase RHA1_ro01245 1315047 - 1314286 - | hypothetical protein dnaJ1 1316198 - 1315050 - | chaperone protein hrcA 1317329 - 1316286 - | heat-inducible transcription repressor RHA1_ro01248 1317422 - 1317856 + | hypothetical protein RHA1_ro01249 1319122 - 1317860 - | coproporphyrinogen III oxidase RHA1_ro01250 1319193 - 1319462 + | hypothetical protein RHA1_ro01251 1319479 - 1321200 + | ferredoxin--nitrite reductase cysH 1321197 - 1321904 + | phosphoadenosine phosphosulfate reductase RHA1_ro01253 1321901 - 1322854 + | sulfate adenylyltransferase subunit 2 RHA1_ro01254 1322857 - 1324173 + | sulfate adenylyltransferase large subunit hisC2 1325918 - 1324869 - | histidinol-phosphate transaminase RHA1_ro01255 1324178 - 1324933 + | hypothetical protein RHA1_ro01257 1326942 - 1325920 - | 3-oxoacyl-[acyl-carrier-protein] synthase RHA1_ro01258 1327605 - 1326946 - | hypothetical protein ilvB1 1329314 - 1327602 - | acetolactate synthase TERM 451 1328368 - 1328358 - G 70 -8.2 -3.85817 | overlap 1328359 ATGGGCCTGCAGAAA CGGC TTC GCCG AGCCCACGCTGTACA TERM 452 1328828 - 1328795 - G 73 -12.3 -3.44051 | gap 1, overlap 1328796 TCGGCAGCAGGAGAA CCGCGGGCCCACCGCG TCG CGCGGCGG-CCAGCGC CTCGGCGAGCTGGCG TERM 453 1328827 - 1328796 - G 73 -15.8 -2.66216 | gap 1, overlap 1328795 CGGCAGCAGGAGAAC CGCGGGCCCACCGCG TCG CGCGGCGG-CCAGCG CCTCGGCGAGCTGGC RHA1_ro01260 1330260 - 1329502 - | hypothetical protein RHA1_ro01261 1330763 - 1330257 - | RNA polymerase sigma factor SigL RHA1_ro01262 1331331 - 1330885 - | hypothetical protein RHA1_ro01263 1331457 - 1332317 + | universal stress protein RHA1_ro01264 1332407 - 1332556 + | hypothetical protein RHA1_ro01265 1332565 - 1333368 + | hypothetical protein RHA1_ro01266 1333365 - 1334297 + | sulfate adenylyltransferase subunit 2 cysNC1 1334297 - 1336180 + | CysN/CysC bifunctional enzyme murE2 1337685 - 1336177 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 454 1337191 - 1337211 + g 74 -14.7 -3.05384 | GCCTCCGGAGTTGTC CGGGTCGCG GTG CGTGACCCG TTCGGTCCCCGGACG RHA1_ro01269 1339163 - 1337784 - | sulfatase cysA 1340202 - 1339189 - | ABC sulfate/ thiosulfate porter, ATP-binding component cysW 1341005 - 1340199 - | ABC sulfate/ thiosulfate porter, permease component RHA1_ro01272 1341883 - 1341002 - | ABC sulfate/ thiosulfate porter, permease component TERM 455 1341818 - 1341870 + g 77 -17.7 -2.64735 | gap 1, overlap 1341868 1341869 GACCTTCTTGCGCGT AGGCGG-AACGGGCGGAGGCGGCA CCGTGA TGCCGCGTCCGCCCGTCGCCGTCG TCGTGTCGCTCACGT RHA1_ro01273 1342922 - 1341891 - | ABC sulfate/ thiosulfate porter, substrate binding component RHA1_ro01274 1342921 - 1343217 + | hypothetical protein RHA1_ro01275 1343502 - 1343320 - | hypothetical protein RHA1_ro01276 1343589 - 1345544 + | glycosyl hydrolase RHA1_ro01277 1346509 - 1345571 - | 2-nitropropane dioxygenase lepA 1348460 - 1346568 - | GTP-binding protein LepA TERM 456 1348385 - 1348360 - G 70 -8.4 -3.93695 | gap 1, opp_overlap 1348359 1348356 GCGATGATGCAGAAA TTC-CGGATCC GGGCA GGATCCGTGAA CGTCTTGTCGGCGAA RHA1_ro01279 1348559 - 1349089 + | hypothetical protein RHA1_ro01280 1349856 - 1349095 - | esterase RHA1_ro01281 1350761 - 1349988 - | AraC family regulator TERM 457 1350540 - 1350483 - G 79 -15.5 -3.37796 | gap 1 GGCGACGACGTACAA CCCCGCCTTCACGA-CGGACAACCGGCC GAG AGCGAGGTGTCCGACCGTGACGGCCGGG TTGACGTGGCAGCCC RHA1_ro01282 1351656 - 1350826 - | transglutaminase-like enzyme RHA1_ro01283 1352636 - 1351665 - | hypothetical protein RHA1_ro01284 1354435 - 1352636 - | hypothetical protein TERM 458 1354450 - 1354468 + H 81 -13.1 -3.59979 | CAGCCGCAGGATTTC CCGGCGC GTCCG GCGCCGG TTTGAGATCGGACAC rpsT 1354573 - 1354833 + | 30S ribosomal protein S20 TERM 459 1354857 - 1354892 + T 100 -26.4 -2.7035 | opp_overlap 1354862, overlap 1354860 CCGTCGTAGGCTCTC CAACAGCCGCTCGATC CTCG GATCGAGCGGCTGTTG TCGTGTCTCCGTCAG TERM 460 1354860 - 1354889 + T 100 -22.3 -3.50045 | opp_overlap 1354862, overlap 1354857 TCGTAGGCTCTCCAA CAGCCGCTCGATC CTCG GATCGAGCGGCTG TTGTCGTGTCTCCGT TERM 461 1354887 - 1354862 - T 93 -19.1 -3.02144 | opp_overlap 1354860 1354857 GTAGGCTCTCCAACA GCCGCTCGATC CTCG GATCGAGCGGC TGTTGTCGTGTCTCC RHA1_ro01286 1356511 - 1354904 - | DNA polymerase III delta subunit RHA1_ro01287 1357856 - 1356747 - | hypothetical protein TERM 462 1357037 - 1357011 - G 70 -12.2 -3.28712 | GGCCGCGCGCCACAA CTGCGCCCGCAG CAG CTCCGCGCGCAG CCACGGCACGGTGAG RHA1_ro01288 1359428 - 1357905 - | carboxylesterase RHA1_ro01289 1359454 - 1360311 + | hypothetical protein RHA1_ro01290 1361649 - 1360684 - | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro01291 1363261 - 1361702 - | ComEC operon protein TERM 463 1362938 - 1362968 + g 74 -16.9 -2.71011 | overlap 1362940 CTCCCGGGGATCGTC GACGAGGGTGACG ACGAG CGTCACCCACGTC TCGTTCCGGGCGAGT RHA1_ro01292 1364124 - 1363261 - | hypothetical protein RHA1_ro01293 1365061 - 1364195 - | hypothetical protein RHA1_ro01294 1365863 - 1365066 - | hypothetical protein RHA1_ro01295 1366509 - 1365850 - | phosphoglycerate mutase RHA1_ro01296 1366931 - 1366506 - | hypothetical protein nadD 1367662 - 1366967 - | nicotinic acid mononucleotide adenylyltransferase RHA1_ro01298 1369142 - 1367682 - | hypothetical protein RHA1_ro01299 1370034 - 1369153 - | hypothetical protein proA 1371340 - 1370099 - | gamma-glutamyl phosphate reductase RHA1_ro01301 1371470 - 1372570 + | oxidoreductase TERM 464 1373152 - 1373116 - g 71 -11.5 -3.61715 | opp_overlap 1373138 GATCGGTCGCAAGAA GGTGCTCGCCACCACGA TCA TCCTGATGGCGGGCAGC ACGTTCGCCATCGGT RHA1_ro01302 1372814 - 1374283 + | MFS superfamily proline/ betaine transporter TERM 465 1374432 - 1374381 - g 70 -15 -2.69151 | overlap 1374378 1374430 CGCCGGGAGAGACGA TCCTGGGCACCGCCTTTGCCGCCA CCCC CGGCGGCAAGGGCGCCAACCAGGC GATCGCCGCGGCGCG TERM 466 1374439 - 1374493 + G 86 -19.3 -3.12668 | opp_overlap 1374430, overlap 1374436 CAACCAGGCGATCGC CGCGGCGCGGGCCGGCGGCGACG-TGA CGT TCATCGGCGCCGTCGGCTC-CGACGTG TTCGCTCTCGACCTG rbsK 1374293 - 1375159 + | ribokinase RHA1_ro01304 1375218 - 1377317 + | ATP-dependent DNA helicase TERM 467 1377501 - 1377519 + G 71 -11.7 -3.62597 | GAGTGCCATCCCGAC CACCGCG CCGGA CGCGGTG TTGTTCAGAAGTCCA RHA1_ro01305 1377469 - 1377981 + | acetyltransferase RHA1_ro01306 1378009 - 1379271 + | diaminobutyrate--2-oxoglutarate aminotransferase ectC 1379291 - 1379689 + | L-ectoine synthase RHA1_ro01308 1379700 - 1380635 + | phosphoglycerate dehydrogenase npdA 1380657 - 1381484 + | NAD-dependent deacetylase proB 1382588 - 1381488 - | gamma-glutamyl kinase TERM 468 1381845 - 1381800 - G 70 -12.5 -3.28712 | gap 1, overlap 1381801 CTTGCGCGCCGACAA CCGGGACGGCCGGGCCACGAAC GCC GTTCCCACCCCGGC-GTCCCGC AGCGCTGCCCCGGCG TERM 469 1381844 - 1381801 - G 73 -16 -2.57132 | gap 1, overlap 1381800 TTGCGCGCCGACAAC CGGGACGGCCGGGCCACGAAC GCC GTTCCCACCCCGGC-GTCCCG CAGCGCTGCCCCGGC obgE 1384045 - 1382585 - | GTPase ObgE TERM 470 1384142 - 1384098 - R 100 -25.3 -5.41143 | gap 1, opp_overlap 1384103 CACTCGTGAAAAAAA CAATAGGGGCGGACC-GGGT ATCACG ACCCAGGTCCGCCCCTATTG GGAGCTTGAAACGTC TERM 471 1384103 - 1384137 + r 93 -19.4 -3.04322 | gap 1, opp_overlap 1384098 GTGAAAAAAACAATA GGGGCGGACC-GGGT ATCACG ACCCAGGTCCGCCCC TATTGGGAGCTTGAA TERM 472 1384169 - 1384154 - R 71 -10.4 -3.57263 | ATTGGGAGCTTGAAA CGTCCC TCAC GGGACG ATGCATACTCGCGGC rpmA 1384452 - 1384189 - | 50S ribosomal protein L27 rplU 1384806 - 1384495 - | 50S ribosomal protein L21 RHA1_ro01314 1388417 - 1385013 - | ribonuclease E/ G TERM 473 1388329 - 1388374 + g 73 -9.5 -3.92625 | gap 1 GCGAGGGCGTGAACG CGGATCTTCTCCGGAAGGGCGG GAA CCGCGCTCCCGGTGGTGG-CCG TTTCGTTCGGCTCTG ndk 1389293 - 1388874 - | nucleoside diphosphate kinase RHA1_ro01316 1389722 - 1389312 - | hypothetical protein RHA1_ro01317 1391146 - 1389719 - | tetrahydrofolylpolyglutamate synthase TERM 474 1390482 - 1390514 + g 71 -9.8 -3.75024 | gap 1 GCCAGGATCGCAACG GCGTCGCGGGGCACG AGCG CGT-CCTCGCGGCCC TTCTTGATGATGCCG valS 1393851 - 1391143 - | valyl-tRNA synthetase RHA1_ro01319 1394182 - 1393907 - | hypothetical protein TERM 475 1394147 - 1394130 - G 93 -14.1 -4.20084 | opp_overlap 1394136 1394139 AGTATGCATCGAAAA CGCCGCC GATC GGCGGCG ACACGGCGACGGGCG RHA1_ro01320 1395358 - 1394198 - | sugar diacid utilization regulator TERM 476 1394434 - 1394454 + g 83 -15.5 -3.55071 | ACGCGCCGAGCACCG CCCGTGACA GTC TGTCACGGG TTTCCGCGGGTATCA RHA1_ro01321 1395500 - 1396924 + | sodium/ solute symporter RHA1_ro01322 1396921 - 1397070 + | hypothetical protein RHA1_ro01323 1397063 - 1397473 + | endoribonuclease L-PSP RHA1_ro01324 1397470 - 1398747 + | D-amino-acid dehydrogenase TERM 477 1398806 - 1398842 + T 100 -20.9 -2.62184 | ACGGCGGCGCCCCGA CCTCGCTGACCGCAACC CCC GACTGCGGTCAGCGAGG TCGTCTCGGGCAGAG RHA1_ro01325 1399316 - 1398864 - | hypothetical protein TERM 478 1399474 - 1399416 - R 72 -11.6 -3.55622 | gap 2, overlap 1399418 GTGAAGGGCCGGAAA GACGCGTCC-GGGCGCCCGCC-CGTCGC GGAGG GCGATGGGGCGGGCACCCGGGGAACGTG TCAGCTGAAGTGCGC TERM 479 1399472 - 1399418 - R 80 -14.2 -3.35522 | gap 2, overlap 1399416 GAAGGGCCGGAAAGA CGCGTCC-GGGCGCCCGCC-CGTCGC GGAGG GCGATGGGGCGGGCACCCGGGGAACG TGTCAGCTGAAGTGC RHA1_ro01326 1399786 - 1399475 - | integration host factor TERM 480 1399935 - 1399920 - H 74 -2.4 -4.72272 | opp_overlap 1399923 1399925, overlap 1399921 CGGCGGCACGAAAAA TGCCAG GACG CCGGCG GTGTGCTGTGTCATG RHA1_ro01327 1399943 - 1400752 + | hypothetical protein RHA1_ro01328 1400816 - 1401076 + | transcriptional regulator RHA1_ro01329 1403155 - 1401107 - | dipeptidyl aminopeptidase RHA1_ro01330 1404217 - 1403204 - | iron ABC transporter periplasmic-binding protein TERM 481 1403746 - 1403777 + g 73 -13 -3.44051 | gap 1 CGGCGAACTCCTTGG GCTGCGCGACCGTCG GCG CGATGG-CGCTCAGC TTGTCGTACTGGGCC RHA1_ro01331 1404924 - 1404280 - | puromycin N-acetyltransferase RHA1_ro01332 1405033 - 1405860 + | formate dehydrogenase accessory protein pcaJ1 1406512 - 1405871 - | 3-oxoacid CoA-transferase pcaI 1407258 - 1406509 - | 3-oxoacid CoA-transferase alpha subunit pcaH 1407411 - 1408124 + | protocatechuate dioxygenase beta subunit pcaG 1408124 - 1408765 + | protocatechuate dioxygenase alpha subunit pcaB 1408794 - 1410146 + | 3-carboxy-cis,cis-muconate cycloisomerase pcaL 1410143 - 1411345 + | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase pcaR 1411342 - 1412139 + | IclR family transcriptional regulator pcaF 1412161 - 1413387 + | acetyl-CoA acetyltransferase TERM 482 1413408 - 1413442 + T 100 -22.9 -3.33696 | CGTCTTCGGTGCACG CATCGGCGGGCAGGC TTCGT GCCCGCCCGCCGATG TTCGTTCCGGGCCGA RHA1_ro01341 1413990 - 1413499 - | phosphoesterase TERM 483 1413929 - 1413951 + g 71 -11.9 -3.54543 | ACCTCGTCCCACACC CGGGCGGGC AGGTC GCGCGCCCG TTTCGGGACATGGGT aroE1 1415021 - 1414107 - | shikimate 5-dehydrogenase RHA1_ro01343 1415132 - 1415809 + | TetR family transcriptional regulator RHA1_ro01344 1415932 - 1417332 + | major facilitator transporter TERM 484 1417383 - 1417345 - T 100 -21.1 -3.61764 | gap 1, opp_overlap 1417349, overlap 1417349 TGATCAACTCGGAAA CGAACGATGCGCCCGGCA CGTG TGCCGGGCGCGTCGT-CG TGTCGGTGGCTAACG TERM 485 1417380 - 1417349 - T 100 -21.6 -3.52918 | opp_overlap 1417349, overlap 1417345 CAACTCGGAAACGAA CGATGCGCCCGGCA CGTG TGCCGGGCGCGTCG TCGTGTCGGTGGCTA TERM 486 1417349 - 1417380 + T 100 -23.8 -2.64933 | opp_overlap 1417349 1417345 CAACTCGGAAACGAA CGATGCGCCCGGCA CGTG TGCCGGGCGCGTCG TCGTGTCGGTGGCTA RHA1_ro01345 1418208 - 1417393 - | ABC sugar transporter, ATP-binding component RHA1_ro01346 1419272 - 1418214 - | ABC sugar transporter, permease component RHA1_ro01347 1420410 - 1419412 - | ABC sugar transporter, substrate-binding component RHA1_ro01348 1421960 - 1420599 - | major facilitator superfamily multidrug resistance protein RHA1_ro01349 1422729 - 1421992 - | GntR family transcriptional regulator RHA1_ro01350 1422860 - 1423921 + | fructokinase RHA1_ro01351 1423914 - 1424813 + | hypothetical protein RHA1_ro01352 1424835 - 1425731 + | myo-inositol catabolism IolB protein RHA1_ro01353 1425752 - 1427686 + | acetolactate synthase RHA1_ro01354 1427723 - 1428628 + | myo-inositol catabolism protein RHA1_ro01355 1428655 - 1429755 + | oxidoreductase RHA1_ro01356 1429761 - 1430633 + | myo-inositol catabolism protein mmsA1 1430645 - 1432150 + | methylmalonate-semialdehyde dehydrogenase (acylating) TERM 487 1432155 - 1432197 + F 100 -23.5 -3.05384 | gap 1, opp_overlap 1432148, overlap 1432138 1432160 AGAACGCATAGGTAC TGGTTCTCCGCGCCGGACCG TCCG CGGTCCGGCGCGGAGT-CCG TTCGATCGAAAGGAA TERM 488 1432160 - 1432193 + F 100 -29.7 -2.54896 | opp_overlap 1432148, overlap 1432155 GCATAGGTACTGGTT CTCCGCGCCGGACCG TCCG CGGTCCGGCGCGGAG TCCGTTCGATCGAAA RHA1_ro01358 1432217 - 1433608 + | NADH dehydrogenase TERM 489 1433920 - 1433886 - g 71 -11.4 -3.61398 | overlap 1433904 CCTGCCGTGGAAGAA CGTGCCGGTCGC GAACGACCTGA GCGACCGGCTCG GACTGCCGGTGGTCC RHA1_ro01359 1433605 - 1434606 + | glucokinase TERM 490 1435100 - 1435049 - g 82 -19.4 -2.87344 | overlap 1435052 GAGGCTGGCCACACA CCACCACGCACCGGCACCACCACC CGAA GGCGGCGGCACCGGTACGTGAGAG CGTGCGATCAGTGGG TERM 491 1435097 - 1435052 - g 86 -21.9 -2.69151 | overlap 1435049 GCTGGCCACACACCA CCACGCACCGGCACCACCACC CGAA GGCGGCGGCACCGGTACGTGA GAGCGTGCGATCAGT RHA1_ro01360 1434603 - 1435097 + | hypothetical protein RHA1_ro01361 1436619 - 1435108 - | major facilitator superfamily sugar transporter RHA1_ro01362 1436814 - 1437866 + | LacI family transcription regulator RHA1_ro01363 1438773 - 1437907 - | sugar phosphate isomerase/epimerase IolE RHA1_ro01364 1440031 - 1438844 - | hypothetical protein RHA1_ro01365 1440104 - 1441117 + | transcriptional regulator RHA1_ro01366 1441910 - 1441134 - | M24/M37 family peptidase TERM 492 1442164 - 1442109 - R 100 -26.2 -3.30124 | GGTCACGCGTCAGAA GTGTCCGACGTCACGGAGCCCGCGGT CGGG ACCGCGGGCTCCGTGACCTCCGAATC GGCCGCTCAACCGGC RHA1_ro01367 1444105 - 1442171 - | dehydroshikimate dehydratase RHA1_ro01368 1444553 - 1444113 - | 3-dehydroquinate dehydratase clpX 1445902 - 1444622 - | ATP-dependent protease ATP-binding subunit RHA1_ro01370 1446146 - 1445907 - | hypothetical protein RHA1_ro01371 1446805 - 1446143 - | ATP-dependent Clp protease proteolytic subunit clpP 1447441 - 1446854 - | ATP-dependent Clp protease proteolytic subunit TERM 493 1447569 - 1447528 - R 100 -30.3 -3.36655 | opp_overlap 1447532 1447535, overlap 1447532 TGACACAGACACTAA CGAAGGAGGGCGGCACCGG AGTC CCGGTGCCGCCCTACTTCG CTCAAAGCGGAAAAC TERM 494 1447565 - 1447532 - R 100 -23.9 -3.4493 | opp_overlap 1447532 1447535, overlap 1447528 ACAGACACTAACGAA GGAGGGCGGCACCGG AGTC CCGGTGCCGCCCTAC TTCGCTCAAAGCGGA TERM 495 1447532 - 1447565 + r 100 -23.9 -3.05384 | opp_overlap 1447532 1447528, overlap 1447535 ACAGACACTAACGAA GGAGGGCGGCACCGG AGTC CCGGTGCCGCCCTAC TTCGCTCAAAGCGGA TERM 496 1447535 - 1447562 + r 100 -24.2 -2.75064 | opp_overlap 1447532 1447528, overlap 1447532 GACACTAACGAAGGA GGGCGGCACCGG AGTC CCGGTGCCGCCC TACTTCGCTCAAAGC tig 1449020 - 1447626 - | trigger factor TERM 497 1449402 - 1449375 - H 84 -17.1 -2.87344 | opp_overlap 1449375 CATCCCCTCCACACA GGAGCGTTCCC ACCCCA GGGAACGCTCC TTTTTTGTCGCGCAC TERM 498 1449375 - 1449402 + H 100 -17.1 -5.24129 | opp_overlap 1449375 CATCCCCTCCACACA GGAGCGTTCCC ACCCCA GGGAACGCTCC TTTTTTGTCGCGCAC RHA1_ro01376 1449622 - 1450440 + | hypothetical protein RHA1_ro01377 1451245 - 1450448 - | DNA-formamidopyrimidine glycosylase RHA1_ro01378 1451725 - 1451252 - | ribose-5-phosphate isomerase B TERM 499 1452752 - 1452696 - g 100 -26.5 -3.53224 | CACCTGTTCGTGAAA CCCGGCCAGATCTACCGCGATCCGCAG CAA CTGCAGTACGCGGCCGACCCGGCCGGG CCCGTCACTCGGTGA RHA1_ro01379 1451793 - 1452767 + | peptidase RHA1_ro01380 1453421 - 1452792 - | hypothetical protein RHA1_ro01381 1453549 - 1454784 + | ferredoxin--NAD(+) reductase TERM 500 1457194 - 1457238 + G 70 -12.7 -3.34715 | opp_overlap 1457168 1457165, overlap 1457192 ATCATCGGCGCCTTC GCCGGTCACGGGCAGTCCGAG ATC CTCGCACCGTACGTGGCCCGC TATTTCGCGGACATC RHA1_ro01382 1454809 - 1457460 + | membrane alanyl aminopeptidase RHA1_ro01383 1458708 - 1457482 - | DNA polymerase IV RHA1_ro01384 1459222 - 1458746 - | AraC family transcriptional regulator TERM 501 1459445 - 1459395 - R 100 -20.6 -2.87683 | gap 2, opp_overlap 1459391 1459438 1459438 ACATCCGGTGAGACA CCG-ACGGCCCGAT-CCGGTTCAG GAGGA CTGAGCCGGGATCGGGCCGCGCGG ACGCTGATCTGTGCA RHA1_ro01385 1459943 - 1459464 - | hypothetical protein RHA1_ro01386 1460190 - 1459930 - | hypothetical protein RHA1_ro01387 1461018 - 1460266 - | endonuclease TERM 502 1460838 - 1460810 - G 93 -18.9 -3.53012 | opp_overlap 1460804 1460813, overlap 1460813 TTCTCGCCCGGGAAA GAAGGCTCTGCGC TGT GCGCGGAGCCTTC GGTGATCACTTGTAA TERM 503 1460813 - 1460835 + g 82 -17 -3.10641 | opp_overlap 1460810 1460813, overlap 1460804 TCGCCCGGGAAAGAA GGCTCTGCGC TGT GCGCGGAGCC TTCGGTGATCACTTG TERM 504 1460835 - 1460813 - G 91 -14.8 -3.90744 | opp_overlap 1460813 1460804, overlap 1460810 TCGCCCGGGAAAGAA GGCTCTGCGC TGT GCGCGGAGCC TTCGGTGATCACTTG RHA1_ro01388 1461033 - 1461473 + | globin protein RHA1_ro01389 1461523 - 1463136 + | alpha-glucosidase RHA1_ro01390 1463124 - 1464035 + | hypothetical protein RHA1_ro01391 1464729 - 1464043 - | hypothetical protein RHA1_ro01392 1465096 - 1464722 - | hypothetical protein RHA1_ro01393 1470045 - 1465144 - | NAD-specific glutamate dehydrogenase TERM 505 1465499 - 1465541 + g 79 -18.5 -2.62184 | opp_overlap 1465494 TCGTAGTACAGCTCG GCGACCTCGTCGATGTCGC GTTCG GCGATGTCGGCGATGTCGC TGATGTCGAGCAGAC RHA1_ro01394 1470577 - 1470152 - | thioesterase RHA1_ro01395 1472260 - 1470581 - | putative ABC transporter ATP-binding protein TERM 506 1472389 - 1472340 - R 84 -13.5 -3.71848 | opp_overlap 1472368, overlap 1472341 GCTTCGCAGGAAGAA GCCGCGGGCACCGGCGCCG CGGGCGCGGGGT CGGCGCCGATACCCGCTGG TGCGCTACGCGACGA TERM 507 1472388 - 1472341 - R 84 -17 -2.82895 | opp_overlap 1472368, overlap 1472340 CTTCGCAGGAAGAAG CCGCGGGCACCGGCGCCG CGGGCGCGGGGT CGGCGCCGATACCCGCTG GTGCGCTACGCGACG RHA1_ro01396 1472822 - 1472394 - | single-strand DNA binding protein TERM 508 1472955 - 1472939 - R 73 -13.7 -2.87132 | GCGGGTGTGGATAGA GCAGCCG AAA CGGCTGC TGACGCTCCGACGGT RHA1_ro01397 1475022 - 1472992 - | copper resistance transporter TERM 509 1474318 - 1474282 - G 74 -14.4 -3.30124 | gap 1 CGCGACCGCGGAGAA CCGGCGCGCCGCC-ACA TCGG TGTAGGCGCCGCGCCTG CGCGCGTGGGCGAGG RHA1_ro01398 1475126 - 1475503 + | hypothetical protein TERM 510 1475696 - 1475664 - f 83 -9.9 -4.39568 | gap 1, opp_overlap 1475664 1475665, overlap 1475658 1475665 ACCGACAGACGAAAA CCCCCGACCACCTG GACGAA CAGG-GATCGGGGA TTTCGTGTCAGCAAT RHA1_ro01400 1476034 - 1477275 + | transposase RHA1_ro01401 1478185 - 1477349 - | chloride peroxidase RHA1_ro01402 1479041 - 1478481 - | hypothetical protein RHA1_ro01403 1479757 - 1479041 - | short chain dehydrogenase RHA1_ro01404 1479845 - 1480348 + | hypothetical protein gdh 1480449 - 1481792 + | glutamate dehydrogenase RHA1_ro01406 1482159 - 1481857 - | hypothetical protein TERM 511 1482170 - 1482134 - G 100 -23.8 -3.85698 | opp_overlap 1482131 CCCTGCCCGCAGAAA GGCCGCCGAGGGTGCA ATGAA CACACCCTCGGCGGCC GGATCTCTACCCTCG RHA1_ro01407 1482417 - 1482208 - | hypothetical protein RHA1_ro01408 1483602 - 1482430 - | linoleoyl-CoA desaturase RHA1_ro01409 1484745 - 1483636 - | oxidoreductase TERM 512 1483692 - 1483726 + g 71 -10.6 -3.71848 | overlap 1483693 ACAGCTGGATCGCCT TGTCCGGATCGGTGTC GGT GTCGCCGGTGCGGACG TTCTTGGTGCACCCC TERM 513 1484139 - 1484173 + g 75 -8.7 -4.2349 | TCGCGTTCGCGTCCG CGA-GTGCGCGTAACTC GTC GAGGTACGCG-ACGTCG TTTTCGGTGTACGCG RHA1_ro01410 1484864 - 1485571 + | TetR family transcriptional regulator RHA1_ro01411 1485598 - 1486449 + | haloalkane dehalogenase RHA1_ro01412 1486527 - 1487105 + | hypothetical protein RHA1_ro01413 1488427 - 1487102 - | major facilitator transporter RHA1_ro01414 1488554 - 1489087 + | hypothetical protein RHA1_ro01415 1489101 - 1491125 + | 2,4-dienoyl-CoA reductase (NADPH) RHA1_ro01416 1491144 - 1491947 + | short chain dehydrogenase RHA1_ro01417 1493704 - 1491968 - | hypothetical protein RHA1_ro01418 1493790 - 1494389 + | oligoribonuclease TERM 514 1494552 - 1494587 + T 100 -19 -3.6869 | opp_overlap 1494559, overlap 1494554 1494559 CGTCACTCACCCCAT ACGGAAAGCCCCCGGC CTCG GCCGGGGGCTTTCCTC TTTGCGATTGGTCTG TERM 515 1494554 - 1494585 + T 100 -26 -3.41936 | opp_overlap 1494559, overlap 1494552 1494559 TCACTCACCCCATAC GGAAAGCCCCCGGC CTCG GCCGGGGGCTTTCC TCTTTGCGATTGGTC TERM 516 1494559 - 1494580 + T 100 -18.7 -4.00934 | opp_overlap 1494559, overlap 1494554 1494552 CACCCCATACGGAAA GCCCCCGGC CTCG GCCGGGGGC TTTCCTCTTTGCGAT TERM 517 1494580 - 1494559 - T 93 -18.7 -3.71378 | opp_overlap 1494559 1494554 1494552 CACCCCATACGGAAA GCCCCCGGC CTCG GCCGGGGGC TTTCCTCTTTGCGAT RHA1_ro01420 1495851 - 1494613 - | lipoprotein TERM 518 1496224 - 1496253 + r 100 -23.7 -4.0162 | opp_overlap 1496224, overlap 1496206 GCGCACTTGCACGAA GGCCCCCATCCTC TCAC GAGGATGGGGGCC TTTCTCGTGTCACGA TERM 519 1496253 - 1496224 - R 100 -23.7 -3.15544 | opp_overlap 1496206 1496224 GCGCACTTGCACGAA GGCCCCCATCCTC TCAC GAGGATGGGGGCC TTTCTCGTGTCACGA TERM 520 1496351 - 1496303 - R 100 -20.5 -3.21099 | gap 1, opp_overlap 1496348 CGGCCGGATGACGAA CGGGCCGCCGGAACGTGAAGTC ACTGCG AACTTCACA-TCCGACGGCCCG TCACTGACGAGGGTT RHA1_ro01422 1496590 - 1496369 - | hypothetical protein RHA1_ro01423 1496752 - 1497225 + | bacterioferritin comigratory protein TERM 521 1497227 - 1497271 + F 90 -16.4 -3.4252 | gap 2 ACCTGTCCGTCTGAT CGGCG-CGACGGGCGGCTG-CG TGT CGTCGGCCGCCCGTCACCGGCG TTGTGGTGGGTCGGA RHA1_ro01424 1497425 - 1498114 + | TetR family transcriptional regulator TERM 522 1498174 - 1498161 - T 75 -9.5 -3.97947 | CGGAGCTACCAGAAA GGCGC ACGG GCGCC GGAGGCGCCTACACG acpS 1498575 - 1498183 - | 4'-phosphopantetheinyl transferase RHA1_ro01426 1507971 - 1498585 - | fatty-acyl-CoA synthase TERM 523 1507853 - 1507867 + g 86 -4.2 -5.22943 | overlap 1507855 TCTACGCCGATGCGC CGCGAA CCC TTCGAG TTTTTTCCGTTTCCT RHA1_ro01427 1508363 - 1509022 + | hypothetical protein RHA1_ro01428 1509019 - 1509501 + | hypothetical protein RHA1_ro01430 1509766 - 1510167 + | hypothetical protein RHA1_ro01431 1510164 - 1510529 + | hypothetical protein RHA1_ro01432 1511281 - 1510667 - | putative deoxyribonucleotide triphosphate pyrophosphatase rph 1512074 - 1511286 - | ribonuclease PH RHA1_ro01434 1512887 - 1512120 - | hypothetical protein RHA1_ro01435 1513686 - 1513012 - | hypothetical protein cysM 1514668 - 1513706 - | cysteine synthase RHA1_ro01437 1515015 - 1514677 - | molybdopterin biosynthesis protein RHA1_ro01438 1515488 - 1515012 - | Mov34/MPN/PAD-1 family protein RHA1_ro01439 1516602 - 1515532 - | hypothetical protein RHA1_ro01440 1517186 - 1516599 - | hypothetical protein clpS 1517561 - 1517223 - | ATP-dependent Clp protease adaptor protein ClpS RHA1_ro01442 1517560 - 1518939 + | nicotinate phosphoribosyltransferase RHA1_ro01443 1518936 - 1519568 + | nicotinamidase RHA1_ro01444 1519578 - 1521626 + | ATP-dependent helicase RHA1_ro01445 1521661 - 1522602 + | ABC transporter, ATP-binding component RHA1_ro01446 1522608 - 1524191 + | anibiotic ABC transporter efflux pump RHA1_ro01447 1526797 - 1524209 - | glycogen phosphorylase RHA1_ro01448 1526967 - 1528985 + | alpha amylase glgB 1528985 - 1531183 + | glycogen branching enzyme RHA1_ro01450 1531230 - 1532651 + | metallopeptidase RHA1_ro01451 1532853 - 1533218 + | major facilitator super family D-galactonate transporter RHA1_ro01452 1533215 - 1533529 + | major facilitator super family D-galactonate transporter TERM 524 1533545 - 1533575 + T 100 -20.5 -4.4767 | CCGCCGGATGGGTGA CCGGGGTGAGTGC CGAGA GCGCTCACCCCGG TTTTCTCGTCAGTCC RHA1_ro01453 1534578 - 1533601 - | thioredoxin RHA1_ro01454 1535008 - 1534637 - | hypothetical protein TERM 525 1535025 - 1535067 + r 100 -25.8 -2.62933 | opp_overlap 1535030, overlap 1535022 1535030 GTGCCCGACCATCTA CGACAGTCCGTAGTGGTGTG AGA TACACCACCACGGACTGTCG TCGTGTCACGCCTTG TERM 526 1535062 - 1535030 - R 89 -18.6 -2.81464 | opp_overlap 1535022 1535025 1535030 CGACCATCTACGACA GTCCGTAGTGGTGT GAGAT ACACCACCACGGAC TGTCGTCGTGTCACG TERM 527 1535030 - 1535062 + r 84 -17.1 -2.84634 | opp_overlap 1535030, overlap 1535022 1535025 CGACCATCTACGACA GTCCGTAGTGGTGTG AGA TACACCACCACGGAC TGTCGTCGTGTCACG RHA1_ro01455 1536266 - 1535073 - | acetyl-CoA acetyltransferase RHA1_ro01456 1536361 - 1536834 + | methylmalonyl-CoA epimerase RHA1_ro01457 1536903 - 1537988 + | myosin RHA1_ro01458 1538311 - 1537985 - | hypothetical protein TERM 528 1538273 - 1538240 - G 74 -14.5 -3.05596 | opp_overlap 1538234 1538236 1538230 1538267 1538271, overlap 1538242 CATTGCGCTACCGAA CAGCGAGCCCTCGGA GGTG TCCGGGGGCGCACTG CGGCGTGTGTTCTTC RHA1_ro01459 1539002 - 1538328 - | hypothetical protein RHA1_ro01461 1541369 - 1540587 - | TetR family transcriptional regulator RHA1_ro01460 1539039 - 1540640 + | adenylate cyclase TERM 529 1541069 - 1541025 - Gf 71 -13.6 -2.72661 | CAGCAGGTGGAAGTA GTCG-TGAGCGGCGGCCGCGAG ACG CTCGCG-CCACCCCTCATCGGC GTCGTCGGCCGGCTC RHA1_ro01462 1541545 - 1542318 + | hypothetical protein RHA1_ro01463 1542658 - 1542284 - | hypothetical protein RHA1_ro01464 1542799 - 1544403 + | hypothetical protein TERM 530 1544449 - 1544471 + T 100 -19.2 -3.6502 | opp_overlap 1544449 CCGGGAATGCCGAAA GCCCCCCAAC AAG GTTGGGGGGC TTTCGGTAACGGATG TERM 531 1544471 - 1544449 - T 100 -19.2 -3.60792 | opp_overlap 1544449 CCGGGAATGCCGAAA GCCCCCCAAC AAG GTTGGGGGGC TTTCGGTAACGGATG TERM 532 1544634 - 1544675 + T 84 -9 -4.49353 | gap 3, opp_overlap 1544637 1544641 1544643, overlap 1544640 1544643 ACACGGAACATCAGC GAAGACACACATCCCATCACC GTG GGTGGTGGG--GTGT-TCTTC TTTCTTCTGTTCTGA TERM 533 1544640 - 1544672 + T 83 -9.1 -4.33203 | opp_overlap 1544637 1544641 1544643, overlap 1544634 1544643 AACATCAGCGAAGAC ACACATCCCATCACC GTG GGTGGTGGGGTGTTC TTCTTTCTTCTGTTC TERM 534 1544643 - 1544669 + T 100 -15.2 -4.24183 | opp_overlap 1544641 1544637 1544643, overlap 1544640 1544634 ATCAGCGAAGACACA CATCCCATCACC GTG GGTGGTGGGGTG TTCTTCTTTCTTCTG TERM 535 1545844 - 1545855 + T 74 -2.2 -4.7254 | CGTCTTACGACTTCG CACG GACC TGTG TTTTTAGTAAACAGT TERM 536 1549121 - 1549139 + T 76 -9.6 -4.07568 | overlap 1549117 CGTATCGCCTGCAGG CTCACAGT TGA GCTGTGAG TTTTCACAAACGACG RHA1_ro01468 1551616 - 1550342 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 537 1550428 - 1550415 - G 71 -9.5 -3.73953 | AGGATCTCGACGAAA CGGGG GTAG CCCCG GTCGATGTGGAAGAC TERM 538 1551809 - 1551757 - g 74 -12.1 -3.61398 | gap 3 CCGTGTGTCGAAGAA CGATCCGCGGCTGATCGCCTACGCCG ACTG CGACG-AGGCGAAC-GCCTCG-ATCG GGGTCGCGGTGGCAT RHA1_ro01469 1551671 - 1552246 + | cobalamin adenosyltransferase RHA1_ro01470 1552669 - 1552247 - | hypothetical protein TERM 539 1552595 - 1552573 - G 70 -14.8 -2.73364 | GCGTCACCCGAAGGA TCGCCGCGGT GCC ACCGCGGCGC AGTACTGCAAGCCGA TERM 540 1552640 - 1552619 - G 86 -5.7 -4.98522 | overlap 1552621 1552622 1552631 AAGCCGATACAAAAA GACCGCGAC GAAG GCCGCGAGC AGCACAACCAGAATG atpC 1553086 - 1552718 - | F0F1 ATP synthase subunit epsilon atpD 1554544 - 1553093 - | F0F1 ATP synthase subunit beta TERM 541 1554481 - 1554521 + g 72 -6.7 -4.30416 | gap 1 GACCGATGACCCGCA CGACGCGGCCGGCGACGG ACGAAC CCGA-GCCTGCCCCGTTG TTTTCGGTTACTGCT atpG 1555528 - 1554548 - | F0F1 ATP synthase subunit gamma atpA 1557220 - 1555577 - | F0F1 ATP synthase subunit alpha RHA1_ro01475 1558110 - 1557283 - | F0F1 ATP synthase subunit delta atpF 1558673 - 1558116 - | F0F1 ATP synthase subunit B TERM 542 1558312 - 1558330 + g 76 -8 -4.2461 | AACTGGTTGTTGCCG GCGGCCAC GAT GCGGTCGC TTTCTTCCTGAGCCT atpE 1558926 - 1558681 - | F0F1 ATP synthase subunit C RHA1_ro01478 1560031 - 1559012 - | F0F1 ATP synthase subunit A RHA1_ro01479 1560625 - 1560122 - | hypothetical protein TERM 543 1560149 - 1560185 + g 70 -12.2 -3.33696 | gap 1, overlap 1560175 CGATTCCGGCGATCC GGCGTCGTCCGACG-GC GTCG GCTCGACGTACGGCGCC TTGGTTCCCAGGACG TERM 544 1560175 - 1560207 + g 83 -15.5 -3.59979 | overlap 1560149 ACGGCGTCGGCTCGA CGTACGGCGCCTTGG TTC CCAGGACGCCGAACG TTTCCGCTCCCAGCA RHA1_ro01480 1561815 - 1560634 - | phospho-N-acetylmuramoyl-pentapeptide-transferase RHA1_ro01481 1562468 - 1561812 - | hypothetical protein RHA1_ro01482 1563394 - 1562465 - | HemK family methyltransferase prfA 1564527 - 1563448 - | peptide chain release factor 1 TERM 545 1564611 - 1564571 - R 100 -29.1 -5.30686 | AATAGGCACAAAAAA GCCGACGCCCGGCCTGCAA TTA TCGCAGGACGGGCGTCGGC GGAACAGCTAGGACT rpmE 1564861 - 1564619 - | 50S ribosomal protein L31 TERM 546 1564994 - 1565008 + r 79 -5.6 -4.63932 | overlap 1564978 TTGCGGTGTGGTCAA CGCGGG TGG TCTGCG TTTTGTTCCACGGTG TERM 547 1565077 - 1565039 - R 100 -28.2 -4.13945 | opp_overlap 1565041 1565072, overlap 1565041 ATTTCGAGGGGAAAA CAGCGGGGCCCGGCGACC GAA AGTCGCCGGGCCCCGCTC TGGTCGCGATCAGTC TERM 548 1565041 - 1565075 + r 100 -30.1 -2.79183 | opp_overlap 1565041 1565039, overlap 1565072 TTCGAGGGGAAAACA GCGGGGCCCGGCGAC CGAAA GTCGCCGGGCCCCGC TCTGGTCGCGATCAG TERM 549 1565075 - 1565041 - R 100 -30.8 -3.6692 | opp_overlap 1565041 1565072, overlap 1565039 TTCGAGGGGAAAACA GCGGGGCCCGGCGACC GAA AGTCGCCGGGCCCCGC TCTGGTCGCGATCAG TERM 550 1565072 - 1565112 + r 79 -14.7 -3.02511 | opp_overlap 1565041 1565039, overlap 1565041 GAAAGTCGCCGGGCC CCGCTCTGGTCGCGATC AGTCGTC GATCGCGCCCGGAGCAG TCTTCGACACCTGCA RHA1_ro01485 1567171 - 1565087 - | transcription termination factor Rho TERM 551 1566876 - 1566911 + g 77 -14.7 -3.14344 | gap 1, overlap 1566879 GCGGCTTCGGTCGCG GCAGCGGCCGGGGCGG AAGAG CCGCCCTGG-CGCTCC TTGATCGCGGCAATC TERM 552 1566879 - 1566908 + g 70 -15 -2.77899 | gap 1, overlap 1566876 GCTTCGGTCGCGGCA GCGGCCGGGGCGG AAGAG CCGCCCTGG-CGC TCCTTGATCGCGGCA TERM 553 1567495 - 1567468 - R 75 -14.9 -2.72049 | overlap 1567457 1567483 1567485 GATAGCTGTGAACGA CCGTAGGGGCA AGGACA CGCCCCTACGG CGTGTCAGCTGGTCC thrB 1568489 - 1567500 - | homoserine kinase thrC 1569571 - 1568489 - | threonine synthase thrA 1570881 - 1569568 - | homoserine dehydrogenase RHA1_ro01489 1572299 - 1570878 - | diaminopimelate decarboxylase TERM 554 1571860 - 1571870 + g 75 -6.8 -4.45738 | ACGGCGGCGTTCAGC TCGG CGA CCGA TTTGTTGTTGCCGTG argS 1573948 - 1572296 - | arginyl-tRNA synthetase RHA1_ro01491 1573993 - 1575087 + | hypothetical protein RHA1_ro01492 1575074 - 1575790 + | hypothetical protein TERM 555 1575809 - 1575854 + T 89 -18.5 -3.04263 | gap 2 CCGGCTTCACGACCA CGTCCAGTCGCGCACCTCGGG CATGTC CTCGAGGTGCGCGAC--GACG TATTCGCCGTGCCGT RHA1_ro01493 1578352 - 1575800 - | putative phosphoketolase TERM 556 1577708 - 1577764 + g 82 -18.8 -2.87931 | gap 2, opp_overlap 1577702 GTGATCGAACGCCGC CCCGGCGGCATGCGCGAGGGC-GT-AGC CGA GCTCGCCGCCCTCGTGGATGCTGCCCGG TGTCTGCACACTGAC RHA1_ro01495 1578658 - 1579818 + | alanine dehydrogenase TERM 557 1579832 - 1579868 + T 93 -18.9 -3.14931 | gap 1, opp_overlap 1579832 1579858, overlap 1579828 GATCGACTGGACGAA CGGGACGCTCGTT-CG ATCTGA CGCAACGAGCGTCCCG TTCGTCCGGGATGGC TERM 558 1579868 - 1579832 - T 93 -18.9 -3.16881 | gap 1, opp_overlap 1579828 1579832, overlap 1579858 GATCGACTGGACGAA CGGGACGCTCGTT-CG ATCTGA CGCAACGAGCGTCCCG TTCGTCCGGGATGGC RHA1_ro01496 1581549 - 1579891 - | long-chain-fatty-acid--CoA ligase TERM 559 1580085 - 1580065 - G 72 -14 -3.15544 | GCGGAGGCTGACGAA CGCGGCGA CGGTC TCGCCGCG GTAGCTGTCCGGCTC RHA1_ro01497 1582391 - 1581603 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro01498 1583386 - 1582403 - | quinone oxidoreductase RHA1_ro01499 1584522 - 1583422 - | acyl-CoA dehydrogenase RHA1_ro01500 1585709 - 1584519 - | acyl-CoA dehydrogenase TERM 560 1584810 - 1584836 + g 80 -15.8 -3.14132 | CTTCAGGCCGGATCC CTCCGGGCCGGG TTG CCCGGCCTCGAG TTGCTGCCGCAGGCG RHA1_ro01501 1586476 - 1585715 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro01502 1587521 - 1586487 - | hypothetical protein TERM 561 1586547 - 1586571 + g 70 -9.1 -3.82191 | overlap 1586567 GTCGTCGATACGCTC GACGGTCGGGG TGC CCGCGGCCGCC TTGTTCTGCGGTTCG fabG 1588296 - 1587514 - | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro01504 1589551 - 1588298 - | acyl-CoA dehydrogenase RHA1_ro01505 1590350 - 1589538 - | enoyl-CoA hydratase TERM 562 1589672 - 1589626 - G 74 -16.6 -2.78463 | gap 1 ATGCCCTCGACGAGA TCGGCCC-CGCGGAACGCCTG CAACAT CAGGCCTTCCGCGCGGGCCAC GGACTCGGCGTAGGT RHA1_ro01506 1591165 - 1590347 - | short chain dehydrogenase RHA1_ro01507 1591328 - 1591807 + | MaoC protein RHA1_ro01508 1591836 - 1593356 + | AMP-dependent synthetase RHA1_ro01509 1593362 - 1594375 + | NADPH: quinone reductase RHA1_ro01510 1594464 - 1595447 + | NADH:quinone reductase RHA1_ro01511 1596876 - 1595500 - | major facilitator transporter RHA1_ro01512 1597069 - 1597695 + | TetR family transcriptional regulator RHA1_ro01513 1598341 - 1597703 - | TetR family transcriptional regulator RHA1_ro01514 1599335 - 1598343 - | phosphotriesterase RHA1_ro01515 1600067 - 1599381 - | hypothetical protein RHA1_ro01516 1600476 - 1600075 - | limonene-1,2-epoxide hydrolase RHA1_ro01517 1601603 - 1600473 - | 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase cysNC2 1603443 - 1601593 - | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein cysD 1604360 - 1603443 - | sulfate adenylyltransferase subunit 2 RHA1_ro01520 1605403 - 1604480 - | transcriptional regulator RHA1_ro01521 1605497 - 1606663 + | hypothetical protein RHA1_ro01522 1606669 - 1607457 + | short chain dehydrogenase RHA1_ro01523 1607477 - 1608634 + | hypothetical protein RHA1_ro01524 1609277 - 1608618 - | protein-tyrosine-phosphatase RHA1_ro01525 1609582 - 1610190 + | endopeptidase Clp RHA1_ro01526 1610195 - 1610779 + | endopeptidase Clp subunit RHA1_ro01527 1611136 - 1610789 - | transcriptional regulator RHA1_ro01528 1612091 - 1611243 - | epoxide hydrolase RHA1_ro01529 1613875 - 1612088 - | N-acyl-D-glutamate deacylase TERM 563 1614235 - 1614195 - g 70 -14.6 -2.79133 | gap 1 CAACGCCGGATGACA CCGGACGCGGCGCTCCCCG TGTC CGGGCAGCTCCGGG-CCGG GGTCGAGACGTTCGC RHA1_ro01530 1613973 - 1614581 + | TetR family transcriptional regulator RHA1_ro01531 1615250 - 1614732 - | hypothetical protein RHA1_ro01532 1615549 - 1615247 - | ArsR family transcriptional regulator TERM 564 1615820 - 1615789 - g 78 -8.6 -4.28774 | CGACGGAATCCAAAA GCCACCCGTAGCGA CCAC TCTCGACGCGTGGC GATCGCGCGTGCAGG RHA1_ro01533 1615754 - 1617367 + | long-chain-fatty-acid--CoA ligase RHA1_ro01534 1617421 - 1618725 + | alpha-ketoglutarate transporter TERM 565 1618767 - 1618735 - f 100 -26.5 -4.00532 | opp_overlap 1618740 GTGTGAAACACGAAA GAGAACCGGCAGGTG CAT CACCTGCCGGTTCTC ACCCGAGCGAGTGAC TERM 566 1618740 - 1618762 + F 100 -19.2 -3.28712 | opp_overlap 1618735 AAACACGAAAGAGAA CCGGCAGGTG CAT CACCTGCCGG TTCTCACCCGAGCGA TERM 567 1619348 - 1619373 + G 80 -16.1 -3.21276 | overlap 1619346 CGCCGCCGCAGCGGT GGTCGCGCTCG CCGT CGTGCGCGACC TGTTCTCGGGGAACA RHA1_ro01536 1618938 - 1620188 + | major facilitator superfamily multidrug resistance protein RHA1_ro01537 1620243 - 1620776 + | MarR family transcriptional regulator TERM 568 1620781 - 1620823 + T 100 -39.4 -4.12198 | opp_overlap 1620781 1620770 CCAAGTGGTGAGAGA CGACTGTCGCCCCGCACCGG ATC CCGGTGCGGGGCGACAGTCG TTTTCAGGGCTTCTA TERM 569 1620823 - 1620781 - T 100 -39.4 -2.88579 | opp_overlap 1620781, overlap 1620770 CCAAGTGGTGAGAGA CGACTGTCGCCCCGCACCGG ATC CCGGTGCGGGGCGACAGTCG TTTTCAGGGCTTCTA RHA1_ro01538 1621612 - 1620836 - | enoyl-CoA hydratase mmsB1 1622508 - 1621609 - | 3-hydroxyisobutyrate dehydrogenase TERM 570 1622365 - 1622379 + g 71 -10 -3.68506 | opp_overlap 1622363 GACGGCCGAATCAGC GACGGT GAC ACCGTC TTTCACTGCCTGTTC RHA1_ro01540 1623611 - 1622541 - | enoyl-CoA hydratase RHA1_ro01541 1624756 - 1623608 - | acyl-CoA dehydrogenase mmsA2 1626269 - 1624767 - | methylmalonate-semialdehyde dehydrogenase (acylating) TERM 571 1626531 - 1626506 - R 86 -15.5 -3.28712 | overlap 1626507 CGCCGTGTTCCAGAA CGACCTCGACG TGCG CGTCGAGGTCA GAAACGAACGGATTC TERM 572 1626530 - 1626507 - R 81 -16.8 -2.57132 | overlap 1626506 GCCGTGTTCCAGAAC GACCTCGACG TGCG CGTCGAGGTC AGAAACGAACGGATT RHA1_ro01543 1627168 - 1626677 - | hypothetical protein RHA1_ro01544 1628520 - 1627204 - | hypothetical protein RHA1_ro01545 1628676 - 1628996 + | hypothetical protein RHA1_ro01546 1629773 - 1629054 - | copper homeostasis protein RHA1_ro01547 1630553 - 1629774 - | glucosamine-6-phosphate deaminase RHA1_ro01548 1631725 - 1630541 - | N-acetylglucosamine-6-phosphate deacetylase RHA1_ro01549 1633401 - 1631722 - | phosphoenolpyruvate--protein phosphotransferase RHA1_ro01550 1634878 - 1633673 - | protein-N(pi)-phosphohistidine--sugar phosphotransferase RHA1_ro01551 1635070 - 1635393 + | protein-N(pi)-phosphohistidine--sugar phosphotransferase RHA1_ro01552 1635390 - 1635854 + | protein-N(pi)-phosphohistidine--sugar phosphotransferase RHA1_ro01553 1636694 - 1635951 - | GntR family transcriptional regulator RHA1_ro01554 1637287 - 1636808 - | hypothetical protein RHA1_ro01555 1637788 - 1637357 - | hypothetical protein RHA1_ro01556 1639232 - 1637799 - | oxidoreductase RHA1_ro01557 1642306 - 1639283 - | adenylate cyclase TERM 573 1639956 - 1639908 - G 71 -11.6 -3.57263 | gap 1, opp_overlap 1639902 1639896, overlap 1639909 AGCGCGACGTCGAAA TGTTCGATCGCTTCCCTCGGCCT GCCG AGGCCGAGGGCGGCGCCCGC-CA CCGCGAAGTGCGCCT RHA1_ro01558 1643139 - 1642366 - | hypothetical protein RHA1_ro01559 1646021 - 1643136 - | helicase TERM 574 1646258 - 1646290 + H 82 -15.7 -3.14564 | opp_overlap 1646261, overlap 1646261 CCTGAGTTCTTACGA GAAGGCTCACCGA CACCGGT TCGGTGGGCCTTC TTCGTGCCCGGATCC TERM 575 1646261 - 1646287 + H 77 -11.6 -3.71848 | opp_overlap 1646261, overlap 1646258 GAGTTCTTACGAGAA GGCTCACCGA CACCGGT TCGGTGGGCC TTCTTCGTGCCCGGA TERM 576 1646704 - 1646654 - g 74 -15.2 -3.02263 | opp_overlap 1646673, overlap 1646673 ACACCCTGGTCAACA CGGCCTCGGCGGCGCACAAGCCCG ATC CGGTCTCGTTCGCGGACGCGGCCA CGCTCCCCGTCGCGG RHA1_ro01560 1646335 - 1647243 + | oxidoreductase, Zn-binding RHA1_ro01561 1647315 - 1647632 + | hypothetical protein RHA1_ro01562 1647697 - 1648401 + | hypothetical protein RHA1_ro01563 1649996 - 1648422 - | sufite oxidase TERM 577 1649487 - 1649476 - G 76 -2.2 -4.81212 | gap 1, overlap 1649477 1649478 GCCAGCAGAAGAAAA GTCCG GCG CGG-C AACCACGAATCCTCG aroE2 1650082 - 1650897 + | shikimate 5-dehydrogenase RHA1_ro01565 1650899 - 1651366 + | hypothetical protein RHA1_ro01566 1651564 - 1652073 + | urate oxidase, N-terminal RHA1_ro01567 1652070 - 1652414 + | transthyretin-like protein RHA1_ro01568 1652417 - 1653310 + | urate oxidase RHA1_ro01569 1653321 - 1654754 + | xanthine/uracil permease RHA1_ro01570 1656054 - 1654801 - | Na+/H+ antiporter RHA1_ro01571 1656660 - 1656151 - | hypothetical protein RHA1_ro01572 1657903 - 1656668 - | benzoate membrane transport protein BenE RHA1_ro01573 1657917 - 1658378 + | thioesterase RHA1_ro01574 1659420 - 1658401 - | phosphotransferase RHA1_ro01575 1659545 - 1659913 + | hypothetical protein TERM 578 1660754 - 1660732 - g 74 -11.3 -3.78934 | CTTCTGCCAGAACAA CCAGTTCGC GATCA GCGAACCGG TCCACCTGCAGAGTC pdhA1 1660157 - 1661254 + | pyruvate dehydrogenase E1 component alpha subunit RHA1_ro01577 1661251 - 1662234 + | pyruvate dehydrogenase RHA1_ro01578 1662265 - 1663518 + | branched-chain alpha-keto acid dehydrogenase subunit E2 RHA1_ro01579 1663538 - 1664728 + | major facilitator transporter RHA1_ro01580 1667288 - 1664733 - | phenoxazinone synthase pntB1 1668817 - 1667393 - | NAD(P) transhydrogenase beta subunit RHA1_ro01582 1669146 - 1668817 - | nicotinamide nucleotide transhydrogenase alpha subunit pntA1 1670259 - 1669147 - | NAD(P) transhydrogenase alpha subunit TERM 579 1670231 - 1670176 - G 100 -27 -3.14344 | gap 1, opp_overlap 1670220 GACTTTGGGCACCAA CGCGACCCGACGCTCACCGTCGTTCGA CTC CCGAACGACGCCGACCGTCGGG-CGCG CAGTGGACGCGCTCT RHA1_ro01584 1670529 - 1670930 + | hypothetical protein TERM 580 1671098 - 1671048 - T 93 -19.7 -2.80816 | gap 2 TCCTCACCGATCACA CCGC-GGGCACCTGCC-CGCGCTGC GGG GCGGCGCGCGGCAGGTGACGTGCGG GAGTTCAGCCGGCGT RHA1_ro01585 1672644 - 1671103 - | acyl-CoA synthetase TERM 581 1672772 - 1672755 - H 71 -7.7 -4.07568 | gap 1 CGCCCGCGGCGAAAA CGCTCGGA CGC TCCG-GCG GGAGGTCCTACAGTT RHA1_ro01586 1672812 - 1673630 + | hypothetical protein RHA1_ro01587 1673636 - 1674319 + | peptidase RHA1_ro01588 1674678 - 1674349 - | hypothetical protein RHA1_ro01589 1675192 - 1676565 + | glycolate oxidase FAD-linked subunit RHA1_ro01590 1676676 - 1677866 + | hypothetical protein RHA1_ro01591 1677932 - 1678207 + | acetyltransferase RHA1_ro01592 1678191 - 1678733 + | lipoprotein RHA1_ro01593 1678730 - 1679263 + | lipoprotein RHA1_ro01594 1679347 - 1680588 + | major facilitator superfamily multidrug transporter RHA1_ro01595 1682134 - 1680581 - | carboxylesterase RHA1_ro01596 1682247 - 1682924 + | hydrolase RHA1_ro01597 1683071 - 1683793 + | transcriptional activator TenA RHA1_ro01598 1683790 - 1684818 + | ABC transporter permease RHA1_ro01599 1684796 - 1685617 + | ABC transporter, permease component RHA1_ro01600 1685610 - 1686422 + | ABC transporter, ATP-binding component RHA1_ro01601 1687797 - 1686436 - | hypothetical protein RHA1_ro01602 1687976 - 1688965 + | esterase RHA1_ro01603 1689321 - 1688989 - | Fe-S ferredoxin-type protein RHA1_ro01604 1690895 - 1689318 - | L-aspartate oxidase RHA1_ro01605 1691185 - 1691736 + | mucin precursor TERM 582 1691995 - 1692050 + G 71 -10.9 -3.67597 | gap 1, overlap 1692000 1692028 ACCGCGTTCCACGAC GCGACCCGGGCCGCGGTCGACAC-CG GCTGG CGTGGGCCGACCGCGACCGCGGTGGC TTCTTCACTCGACGA RHA1_ro01606 1691839 - 1692756 + | PPE family protein RHA1_ro01607 1692771 - 1693436 + | hypothetical protein RHA1_ro01608 1693531 - 1694865 + | hypothetical protein RHA1_ro01609 1695143 - 1696225 + | transposase TERM 583 1696299 - 1696241 - T 78 -16.1 -2.74865 | gap 1, opp_overlap 1696243 1696244, overlap 1696292 1696293 ATCAGAGACACACCA CTAGCG-CCCGTGCGCCTTTCTGGTAGC GGCA GCAACCACAAAGGCGCACAAGCCGTCAG GCGACGACGGAGCGC RHA1_ro01610 1697033 - 1696296 - | citrate synthase, C-terminal RHA1_ro01611 1697383 - 1697030 - | citrate synthase, N-terminal TERM 584 1697558 - 1697574 + H 75 -12.3 -3.53012 | opp_overlap 1697529 TACACGCCCTCGAAG CCGATCC CCT GGATCGG TTTGGCCACCAACGG RHA1_ro01612 1697611 - 1697898 + | hypothetical protein RHA1_ro01613 1697950 - 1698051 + | hypothetical protein RHA1_ro01614 1698496 - 1698873 + | transcriptional regulator RHA1_ro01615 1699015 - 1700367 + | hypothetical protein RHA1_ro01616 1700373 - 1701821 + | hypothetical protein RHA1_ro01617 1702967 - 1701834 - | adenine specific DNA-methyltransferase RHA1_ro01618 1704041 - 1703049 - | NADPH:quinone reductase acsA1 1705678 - 1704038 - | acetate--CoA ligase RHA1_ro01620 1706547 - 1705678 - | major facilitator transporter RHA1_ro01621 1707261 - 1708004 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro01622 1708048 - 1709235 + | acyl-CoA dehydrogenase TERM 585 1709273 - 1709241 - f 100 -26.3 -2.67209 | overlap 1709232 CACCAACTGACATCA GCCGCCCTGCGGCCG GAA CGGGCGCAGGGCGGC ACCACGCTCTCGAAG RHA1_ro01623 1709299 - 1710492 + | acetyl-CoA acetyltransferase RHA1_ro01624 1710497 - 1711081 + | TetR family transcriptional regulator RHA1_ro01625 1711136 - 1711711 + | TetR family transcriptional regulator RHA1_ro01626 1711822 - 1712295 + | transcriptional regulator RHA1_ro01627 1712380 - 1712793 + | hypothetical protein RHA1_ro01628 1713956 - 1712862 - | leucine dehydrogenase/ phenylalanine dehydrogenase RHA1_ro01629 1717475 - 1713963 - | indolepyruvate ferredoxin oxidoreductase RHA1_ro01630 1717613 - 1718125 + | AsnC family transcriptional regulator RHA1_ro01631 1718149 - 1718610 + | riboflavin synthase subunit beta TERM 586 1718632 - 1718676 + T 100 -19.6 -3.39595 | gap 1, opp_overlap 1718637 1718641, overlap 1718634 1718641 CCCACTCCGAACCGC AACGA-GAAACCACCGTCAGT ACGG ACTGACGGTGGTTTCCTCGTG TTATCGGTCCTTCGC TERM 587 1718634 - 1718674 + T 100 -22.2 -3.2661 | gap 1, opp_overlap 1718637 1718641, overlap 1718632 1718641 CACTCCGAACCGCAA CGA-GAAACCACCGTCAGT ACGG ACTGACGGTGGTTTCCTCG TGTTATCGGTCCTTC TERM 588 1718670 - 1718637 - T 100 -22.7 -2.75481 | opp_overlap 1718634 1718632 1718641, overlap 1718641 TCCGAACCGCAACGA GAAACCACCGTCAGT ACGG ACTGACGGTGGTTTC CTCGTGTTATCGGTC TERM 589 1718666 - 1718641 - T 100 -17.7 -4.06562 | opp_overlap 1718634 1718632 1718641, overlap 1718637 AACCGCAACGAGAAA CCACCGTCAGT ACGG ACTGACGGTGG TTTCCTCGTGTTATC TERM 590 1718641 - 1718666 + T 95 -17.7 -3.8572 | opp_overlap 1718641 1718637, overlap 1718634 1718632 AACCGCAACGAGAAA CCACCGTCAGT ACGG ACTGACGGTGG TTTCCTCGTGTTATC RHA1_ro01632 1719318 - 1718677 - | restriction endonuclease RHA1_ro01633 1719510 - 1720565 + | Zn-dependent alcohol dehydrogenase RHA1_ro01634 1722080 - 1720569 - | transcriptional regulator RHA1_ro01635 1722202 - 1723653 + | permease for cytosine/purines, uracil, thiamine, allantoin RHA1_ro01636 1723646 - 1724050 + | hypothetical protein RHA1_ro01637 1724179 - 1724331 + | hypothetical protein RHA1_ro01638 1725708 - 1724341 - | lysyl-tRNA synthetase RHA1_ro01639 1726139 - 1725792 - | photosystem I, iron-sulfur center RHA1_ro01640 1727731 - 1726136 - | L-aspartate oxidase TERM 591 1727874 - 1727823 - R 100 -26 -3.17723 | opp_overlap 1727870, overlap 1727864 TCAGCGTGAACCGAA TCGCCCGTGAGCGGTTAACGAGTC CAGG GACTCGCTAACCACGCACGGGCGC TACGCGCCTTTGCCG TERM 592 1727870 - 1727882 + r 71 -10.5 -3.62096 | opp_overlap 1727823 1727864 CGCTAACCACGCACG GGCGC TAC GCGCC TTTGCCGTAGTCGAC RHA1_ro01641 1728302 - 1727874 - | pyridoxamine 5prime-phosphate oxidase RHA1_ro01642 1731213 - 1728304 - | FAD binding oxidoreductase RHA1_ro01643 1731271 - 1732020 + | hypothetical protein RHA1_ro01644 1732056 - 1732838 + | hypothetical protein RHA1_ro01645 1734019 - 1732841 - | monooxygenase TERM 593 1735446 - 1735431 - gR 73 -11.8 -3.36078 | overlap 1735423 1735419 AAACCAACCATAAGA CCCGCC ACTC GGCGGG CTGACGGTATCGCTG RHA1_ro01646 1734018 - 1735541 + | transposase RHA1_ro01647 1735719 - 1735522 - | hypothetical protein ligB 1735813 - 1737324 + | ATP-dependent DNA ligase RHA1_ro01649 1737413 - 1737889 + | hypothetical protein RHA1_ro01650 1738378 - 1737896 - | hypothetical protein RHA1_ro01651 1738473 - 1739201 + | short chain dehydrogenase RHA1_ro01652 1739986 - 1739204 - | S-isoprenylcysteine O-methyltransferase TERM 594 1739797 - 1739828 + g 72 -13.6 -3.24747 | opp_overlap 1739770 CCACGTCGATGACCA CGGCGACCGCGACG GGAG CGTCGGGGCCGTCG TTGATCGTGTGGGGC TERM 595 1740921 - 1740969 + G 86 -18.3 -3.15544 | gap 2 CGCTCTCGTCGTGCG GCCGGTGGTC-C-GCGTCGACGG CGAAC CTGTCGACGCAGTGACCGTCGGC TTCATCGGCGTCCGG RHA1_ro01653 1740121 - 1743333 + | helicase RHA1_ro01654 1743380 - 1743796 + | hypothetical protein RHA1_ro01655 1743841 - 1744272 + | hypothetical protein RHA1_ro01656 1745018 - 1744281 - | hypothetical protein RHA1_ro01657 1745545 - 1745018 - | flavin oxygenase RHA1_ro01658 1745585 - 1747279 + | UDP-glucose-4-epimerase RHA1_ro01659 1748224 - 1747280 - | polyphosphate kinase RHA1_ro01660 1748281 - 1748634 + | excisionase RHA1_ro01661 1749618 - 1748635 - | phosphoesterase RHA1_ro01662 1751045 - 1749702 - | stomatin protein RHA1_ro01663 1751178 - 1751987 + | pyridoxamine 5prime-phosphate oxidase-related protein TERM 596 1752061 - 1752039 - T 84 -16.3 -2.78816 | CCAGCCCGGATGAGA GCGGCGAGC TTCGT GCTCGCCGC TCTCGCGGACCGAAA RHA1_ro01664 1752654 - 1752094 - | hypothetical protein RHA1_ro01665 1752850 - 1752665 - | hypothetical protein RHA1_ro01666 1753316 - 1752954 - | transposase RHA1_ro01667 1753762 - 1753403 - | transposase RHA1_ro01668 1753744 - 1753983 + | hypothetical protein RHA1_ro01669 1755110 - 1753980 - | transposase TERM 597 1755343 - 1755300 - H 83 -15.2 -3.29043 | opp_overlap 1755307 1755308, overlap 1755287 1755275 1755308 AAGGCTCCTGGAGAA CCGCAAGAGCCCCGGACACG ATCG CGCGTCCGGGGCATTTACTG GAAGTTGTTACGTGA TERM 598 1755307 - 1755336 + H 89 -14.9 -3.75015 | opp_overlap 1755287 1755275 1755300 1755308, overlap 1755308 CTGGAGAACCGCAAG AGCCCCGGACACG ATCG CGCGTCCGGGGCA TTTACTGGAAGTTGT TERM 599 1755308 - 1755335 + H 89 -18.4 -2.84527 | opp_overlap 1755287 1755275 1755308 1755300, overlap 1755307 TGGAGAACCGCAAGA GCCCCGGACACG ATCG CGCGTCCGGGGC ATTTACTGGAAGTTG TERM 600 1755335 - 1755308 - H 100 -20.6 -3.11291 | opp_overlap 1755307 1755308, overlap 1755287 1755275 1755300 TGGAGAACCGCAAGA GCCCCGGACACG ATCG CGCGTCCGGGGC ATTTACTGGAAGTTG RHA1_ro01670 1755675 - 1757033 + | site specific restriction modification enzyme subunit RHA1_ro01671 1757339 - 1757145 - | transposase TERM 601 1757660 - 1757644 - g 76 -2.1 -4.72986 | overlap 1757645 GACGTGTATCAAAAA TCCGGTG CCA CATCGGC GCCCTGAGAGATGTC RHA1_ro01672 1757493 - 1757735 + | hypothetical protein RHA1_ro01673 1759282 - 1757720 - | sigma factor, sigma 70 type, group 2 RHA1_ro01674 1759783 - 1759286 - | hypothetical protein RHA1_ro01675 1760637 - 1759774 - | ATPases involved in chromosome partitioning RHA1_ro01676 1762436 - 1760712 - | DNA repair helicase RHA1_ro01677 1767733 - 1762421 - | DNA helicase RHA1_ro01678 1769711 - 1767867 - | hypothetical protein TERM 602 1769693 - 1769664 - GH 72 -6.4 -4.28254 | gap 1 GGCGAACAGCGAAAA CCG-GGACGCCGA TCTGG TCGTCGTCCGCAG TCTCGAAAGGACCAC RHA1_ro01679 1769710 - 1770285 + | tellerium resistance protein RHA1_ro01680 1772396 - 1770432 - | hypothetical protein RHA1_ro01681 1773888 - 1772437 - | hypothetical protein RHA1_ro01682 1775522 - 1774353 - | hypothetical protein RHA1_ro01683 1776541 - 1775519 - | hypothetical protein RHA1_ro01684 1779311 - 1776570 - | hypothetical protein RHA1_ro01685 1781305 - 1779308 - | hypothetical protein RHA1_ro01686 1784043 - 1781320 - | hypothetical protein RHA1_ro01687 1787602 - 1784027 - | hypothetical protein TERM 603 1785593 - 1785611 + g 74 -11 -3.73068 | opp_overlap 1785584 1785585, overlap 1785590 CATGAAGTCCGCCGA CGGGGTGA GCA TCACCTCG TTGTTGGCTTCCGCG RHA1_ro01688 1790365 - 1787651 - | hypothetical protein TERM 604 1787735 - 1787681 - G 78 -16.8 -3.09933 | overlap 1787676 CCGGAACGGATCGAA CGGGTCGCCGGCGGGCGAGCGGGCCG GGG CGGCCGAGCCGCTCGGCGCCGTCCCG CCGAACGTCGGAGCC RHA1_ro01689 1790931 - 1790362 - | hypothetical protein RHA1_ro01690 1791598 - 1791921 + | hypothetical protein RHA1_ro01691 1792065 - 1792310 + | hypothetical protein RHA1_ro01692 1792307 - 1792552 + | hypothetical protein RHA1_ro01693 1792670 - 1793062 + | hypothetical protein RHA1_ro01694 1794722 - 1793073 - | helicase RHA1_ro01695 1794802 - 1795221 + | CoA-binding protein RHA1_ro01696 1795330 - 1796019 + | tellerium resistance protein RHA1_ro01697 1796265 - 1796822 + | hypothetical protein RHA1_ro01698 1797498 - 1796848 - | TetR family transcriptional regulator TERM 605 1797069 - 1797082 + g 76 -2.3 -4.7497 | overlap 1797065 1797054 GCGCCAGCTCCGCCC GCAGC GCCG GCTCC TTTTTGATGAGTCGG TERM 606 1797604 - 1797614 + G 82 -4 -4.96848 | ATCTATGAATCTCAA TATC GGT GATA TTTTTCTGTACCCGC RHA1_ro01699 1797593 - 1798108 + | CarD family transcriptional regulator TERM 607 1798161 - 1798112 - T 100 -25.9 -3.31144 | opp_overlap 1798117, overlap 1798117 GTCGCAGTCTGAGAA CACCATCGGCAGCAGCCCTGAAC GAAA GTTCAGGGCTGCTGCCGATTTCG TGTGTCATTTCGCGG TERM 608 1798156 - 1798117 - T 100 -31 -2.80252 | opp_overlap 1798117, overlap 1798112 AGTCTGAGAACACCA TCGGCAGCAGCCCTGAAC GAAA GTTCAGGGCTGCTGCCGA TTTCGTGTGTCATTT TERM 609 1798117 - 1798156 + T 100 -31 -3.9163 | opp_overlap 1798112 1798117 AGTCTGAGAACACCA TCGGCAGCAGCCCTGAAC GAAA GTTCAGGGCTGCTGCCGA TTTCGTGTGTCATTT RHA1_ro01700 1799081 - 1798206 - | glycine rich protein RHA1_ro01701 1799313 - 1800311 + | beta lactamase TERM 610 1800306 - 1800364 + T 100 -29.1 -2.62184 | gap 1, opp_overlap 1800327 GCAGTCTTCGCCCGT CGCTG-ACACGTGAGTGGCAAAGCGTGC CCGA GCACGCCTTGCCACTCACGTGGGCGGCG TCATCTCGAGCCGCA TERM 611 1800342 - 1800327 - T 71 -10.4 -3.57462 | opp_overlap 1800306 CACGTGAGTGGCAAA GCGTGC CCGA GCACGC CTTGCCACTCACGTG RHA1_ro01702 1801394 - 1800351 - | DNA polymerase IV RHA1_ro01703 1801912 - 1801460 - | hypothetical protein RHA1_ro01704 1803776 - 1802124 - | hypothetical protein RHA1_ro01705 1803802 - 1804788 + | protein kinase RHA1_ro01706 1805713 - 1804805 - | coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase RHA1_ro01707 1805824 - 1806171 + | hypothetical protein RHA1_ro01708 1808040 - 1806172 - | NahA family Na(+)/H(+) antiporter TERM 612 1806850 - 1806818 - G 74 -16.4 -2.78384 | gap 1 GCCGCCGTCAGGACA CCCACCCGAGCCTCG TTGG CGAG-CTCGGGTGAG TCGATGGCCAGGTCG RHA1_ro01709 1808491 - 1808051 - | hypothetical protein RHA1_ro01710 1809226 - 1808525 - | hypothetical protein RHA1_ro01711 1809550 - 1809272 - | hypothetical protein RHA1_ro01712 1810636 - 1809647 - | arabinofuranosidase TERM 613 1810196 - 1810212 + g 72 -13.7 -3.12999 | opp_overlap 1810191 CCCCGAGGAACCCGG CGGGCTC GCT GAGCCCG TTCCGTCTCCCGTGC RHA1_ro01713 1810840 - 1811202 + | hypothetical protein TERM 614 1811193 - 1811250 + T 70 -14.1 -2.53382 | gap 1, opp_overlap 1811204, overlap 1811207 GCACGAACCGCCGTC CGGCAACTGAATCAGCGCGCCCCAACAG AGA CTCCCGGGGCGCGCTGATTCGGAT-CGG TCGGTTACGGCTCGT TERM 615 1811240 - 1811204 - T 100 -20.9 -3.17075 | opp_overlap 1811193 1811207 CGTCCGGCAACTGAA TCAGCGCGCCCCAACAG AGA CTCCCGGGGCGCGCTGA TTCGGATCGGTCGGT RHA1_ro01714 1811587 - 1811255 - | hypothetical protein RHA1_ro01715 1812077 - 1811754 - | hypothetical protein RHA1_ro01716 1812652 - 1812173 - | MaoC dehydratase RHA1_ro01717 1813506 - 1812751 - | hypothetical protein RHA1_ro01718 1815854 - 1813503 - | hypothetical protein RHA1_ro01719 1816276 - 1815851 - | hypothetical protein TERM 616 1817169 - 1817133 - g 78 -15.9 -3.05384 | overlap 1817135 CGGCCCGGCATGGAA GAGCACGCTGACGGCGA ACA TCACCGCCAACGTGATC CGCAACCTGTGGGCC RHA1_ro01720 1816450 - 1817670 + | fatty acid desaturase RHA1_ro01721 1818972 - 1817671 - | glutamine synthetase TERM 617 1818205 - 1818177 - G 70 -13.1 -3.29144 | GTAGCGCCCGCAGAA TCCCGGCGATGGC CGC ACCACCGGCGGGA GTCAGCCCGTACTGG RHA1_ro01722 1820915 - 1818972 - | acyl-CoA thioesterase TERM 618 1820795 - 1820747 - G 73 -7.1 -4.12188 | GCAGCAGCGCGAAAA CGGCGACGGTGCCGACCTCGAGG GTC CGCCACGGCTGGCCCCGTAACCG TTGCAGCACCTGGCC RHA1_ro01723 1822212 - 1821031 - | hypothetical protein TERM 619 1822340 - 1822353 + H 79 -2.4 -5.04601 | ACGAGAATCAGTGTT CTAC GCCACA GTAG TTTTTCGTTTCTGCG RHA1_ro01724 1822411 - 1824156 + | aldehyde dehydrogenase RHA1_ro01725 1824204 - 1825793 + | choline dehydrogenase RHA1_ro01726 1826467 - 1825865 - | hypothetical protein RHA1_ro01727 1826719 - 1827540 + | hydrolase RHA1_ro01728 1828641 - 1827592 - | sulfonate ABC transporter substrate-binding component RHA1_ro01729 1829598 - 1828657 - | taurine dioxygenase RHA1_ro01730 1830631 - 1829675 - | taurine dioxygenase RHA1_ro01731 1831473 - 1830745 - | transcriptional regulator RHA1_ro01732 1832794 - 1831550 - | nitrilotriacetate monooxygenase, component A RHA1_ro01733 1834040 - 1832811 - | acyl-CoA dehydrogenase RHA1_ro01734 1834968 - 1834069 - | nitrilotriacetate monooxygenase, component A RHA1_ro01735 1835479 - 1835102 - | transporter protein RHA1_ro01736 1835582 - 1835974 + | hypothetical protein RHA1_ro01737 1836018 - 1836944 + | monooxygenase TERM 620 1837014 - 1837037 + F 76 -9.4 -4.18018 | opp_overlap 1837016, overlap 1837015 ATCGTTTCGGGAATC CACCGGCCCG TCCG CGGGCCGGGA TTTTCCGTCCCGACG TERM 621 1837015 - 1837036 + F 72 -12.9 -3.10597 | opp_overlap 1837016, overlap 1837014 TCGTTTCGGGAATCC ACCGGCCCG TCCG CGGGCCGGG ATTTTCCGTCCCGAC TERM 622 1837035 - 1837016 - f 80 -16.4 -2.52464 | opp_overlap 1837015 1837014 CGTTTCGGGAATCCA CCGGCCCG TCCG CGGGCCGG GATTTTCCGTCCCGA RHA1_ro01738 1837093 - 1838109 + | D-methionine ABC transporter ATP-binding component RHA1_ro01739 1838106 - 1838798 + | ABC D-methionine transporter, permease component RHA1_ro01740 1838838 - 1839764 + | D-methionine-binding lipoprotein TERM 623 1839954 - 1839897 - g 79 -11.8 -4.08767 | opp_overlap 1839902 1839904, overlap 1839882 CCGAGGTCGCGAAAA TCGCCGAGCGCGGCACCCTCGACGCG CTGTTC CTCGCGGACGGTCCTGCGCTCCGCGA GGATCCCGCCGTCAA RHA1_ro01741 1839764 - 1841038 + | nitrilotriacetate monooxygenase, component A RHA1_ro01742 1841489 - 1841049 - | transcriptional regulator RHA1_ro01743 1841603 - 1842511 + | Zn-containing alcohol dehydrogenase RHA1_ro01744 1842563 - 1843201 + | methyltransferase RHA1_ro01745 1843493 - 1843227 - | hypothetical protein RHA1_ro01746 1843589 - 1844377 + | methionyl aminopeptidase RHA1_ro01747 1844494 - 1844904 + | hypothetical protein RHA1_ro01748 1844967 - 1845041 + | hypothetical protein TERM 624 1845458 - 1845502 + T 72 -12.8 -3.14132 | gap 2, opp_overlap 1845467 1845470 1845486 TCCGCCGACTGTGCA CCGCACACACCAGGCCCGGTGG TAA CCACCCGGCC-GC-GTGAGCGG TTCGTCGCAGCCCGG RHA1_ro01749 1846385 - 1845435 - | hypothetical protein TERM 625 1845492 - 1845470 - G 70 -14.8 -2.69799 | opp_overlap 1845458, overlap 1845467 1845486 GCACCGCACACACCA GGCCCGGTGG TAA CCACCCGGCC GCGTGAGCGGTTCGT RHA1_ro01750 1846672 - 1846379 - | hypothetical protein RHA1_ro01751 1847047 - 1846676 - | hypothetical protein RHA1_ro01752 1847459 - 1847037 - | hypothetical protein RHA1_ro01753 1848188 - 1847478 - | acetyltransferase RHA1_ro01754 1848700 - 1848200 - | flavin reductase RHA1_ro01755 1849329 - 1848697 - | FMN reductase RHA1_ro01756 1849406 - 1850278 + | D-methionine-binding lipoprotein RHA1_ro01757 1850279 - 1851301 + | D-methionine ABC transporter ATP-binding component RHA1_ro01758 1851298 - 1851960 + | ABC D-methionine transporter, permease component RHA1_ro01759 1852827 - 1852000 - | ABC peptide transporter, ATP-binding component RHA1_ro01760 1853686 - 1852820 - | ABC peptide transporter, ATP-binding component RHA1_ro01761 1854533 - 1853676 - | ABC peptide transporter, permease component RHA1_ro01762 1855565 - 1854540 - | ABC peptide transporter, permease component RHA1_ro01763 1857085 - 1855562 - | peptide ABC transporter periplasmic protein RHA1_ro01764 1858511 - 1857120 - | nitrilotriacetate monooxygenase, component A RHA1_ro01765 1860026 - 1858662 - | transcriptional regulator RHA1_ro01766 1860778 - 1860080 - | lysophospholipase TERM 626 1860894 - 1860876 - H 78 -3.8 -4.81212 | gap 1, opp_overlap 1860876 1860877 1860891, overlap 1860871 TCGAGCAGAACAAAA CGCGTGC CTTCTC GC-CGCG CTTCGTGTTTTGTTC TERM 627 1860891 - 1860901 + H 77 -4.6 -4.63486 | opp_overlap 1860876 1860871, overlap 1860876 1860877 CGCGTGCCTTCTCGC CGCG CTT CGTG TTTTGTTCCGAACAT RHA1_ro01767 1860988 - 1862286 + | O-acetylhomoserine aminocarboxypropyltransferase RHA1_ro01768 1862288 - 1863358 + | alkanesulfonate monooxygenase TERM 628 1864445 - 1864427 - g 72 -6.7 -4.25104 | GTGCGGTCATGAAAA TCGCCGT CCTCT ACGACGA ACCCTTCTGGCGCGC RHA1_ro01769 1863538 - 1864920 + | amine oxidase (flavin-containing) RHA1_ro01770 1865711 - 1864914 - | short chain dehydrogenase RHA1_ro01771 1867297 - 1865873 - | aldehyde dehydrogenase TERM 629 1867679 - 1867700 + G 70 -14.5 -2.73875 | overlap 1867677 CGGGCGAGCGGGGCC GCGGGATCT CAGG AGATCCCGC TCGTCTTCACCAACA RHA1_ro01772 1867460 - 1868038 + | hypothetical protein RHA1_ro01773 1868058 - 1868333 + | hypothetical protein RHA1_ro01774 1868330 - 1871632 + | arabinosyltransferase C terB 1872130 - 1871675 - | tellurium resistance protein RHA1_ro01776 1872986 - 1872243 - | hypothetical protein RHA1_ro01777 1873132 - 1873488 + | cytosine/purines/uracil/thiamine/allantoin family permease TERM 630 1873537 - 1873499 - f 100 -22.4 -3.02511 | TGTAGTCCTCGAACA CCGCACCGCCCGAGCCCG TTA CAGGCTCGGGCGGTGTGC GTAGTGCCCGCCCCT TERM 631 1873549 - 1873568 + F 89 -15 -3.74347 | overlap 1873542 GTGCGTAGTGCCCGC CCCTGCCC GCTC GGGCAGGG TTTCGCGTTTGTCCA RHA1_ro01778 1873654 - 1874061 + | glyoxalase/bleomycin resistance protein RHA1_ro01779 1875212 - 1874058 - | amidohydrolase RHA1_ro01780 1875880 - 1875209 - | hypothetical protein RHA1_ro01781 1876290 - 1875877 - | endoribonuclease RHA1_ro01782 1877747 - 1876287 - | 4-hydroxyphenylacetic hydroxylase RHA1_ro01783 1878364 - 1877744 - | 4-hydroxyphenylacetate 3-monooxygenase, reductase component RHA1_ro01784 1878495 - 1879463 + | dienelactone hydrolase RHA1_ro01785 1880098 - 1879421 - | NADH-ubiquinone/plastoquinone TERM 632 1881151 - 1881180 + G 71 -2.8 -4.56597 | opp_overlap 1881150, overlap 1881156 AGGTACCGAACAGAC TTCGACGTCG TGATCCAGGT CGACGACGGA TTTTTGGACGCCGGC RHA1_ro01786 1880218 - 1881426 + | hypothetical protein RHA1_ro01787 1882349 - 1881423 - | LysR family transcriptional regulator RHA1_ro01788 1883977 - 1882436 - | amino acid transporter TERM 633 1885792 - 1885770 - g 81 -12 -3.90744 | GCCCCGGGGAAACAA GGTCGTCCTC TTC GACGACGACC ACTACTACCTCGGTG RHA1_ro01789 1884208 - 1886325 + | NADH:flavin oxidoreductase RHA1_ro01790 1886337 - 1886702 + | hypothetical protein RHA1_ro01791 1886738 - 1888234 + | aldehyde dehydrogenase TERM 634 1888280 - 1888308 + F 70 -13.8 -2.52464 | opp_overlap 1888280 CGGCGGGCGAATGTA CCCGTCGGCGCT CCCGA AGCGCCCGCGGG TACATTCGCCCCGAA RHA1_ro01792 1888387 - 1888629 + | acetyltransferase RHA1_ro01793 1888661 - 1889647 + | 1-aminocyclopropane-1-carboxylate oxidase RHA1_ro01794 1889838 - 1891217 + | dicarboxylate/amino acid:cation symporter TERM 635 1891268 - 1891223 - f 89 -14.9 -3.71527 | gap 2, opp_overlap 1891235 CGCGAAGTAGCGAAA CGGTC--GACGAGAGCCTTCC CCACGT GGAAGGCTCTCGTCATGGCCG ACCTCGACGCGATCA RHA1_ro01795 1891262 - 1891657 + | hypothetical protein TERM 636 1895715 - 1895687 - g 70 -12.4 -3.28712 | gap 1 CGGGTTGCGGCAGAA GGTGCTGCTCCGG TGCT CCGGGGC-GCACC AGACGGCGAGCGACG RHA1_ro01796 1892034 - 1897526 + | glutamate synthase large subunit TERM 637 1898845 - 1898821 - g 77 -10.8 -3.9461 | gap 1 CGTGTCGAAGAACAA GTCGTTCCGCG TCCC CGCG-AACGAC GACGCACCGATGATC cysJ 1897523 - 1899292 + | sulfite reductase [NADPH] flavoprotein alpha-component TERM 638 1899280 - 1899268 - f 76 -6.2 -4.56133 | overlap 1899270 GCTCAAGAAGGAAAA GCGC TACCT GCGC GACGTGTACTGACCA RHA1_ro01798 1899327 - 1899776 + | NADPH--hemoprotein reductase TERM 639 1899835 - 1899779 - T 100 -23.2 -2.62263 | gap 2 ATTCCTCGGATAGCA CCTCACACCGGGAGCCGCGACTGCACGC TCC GCACCCAGTCGCGGCTCCCG-T-CGAGG TAGCGGTCCCGTGCC paaX 1900644 - 1899781 - | transcriptional repressor for phenylacetic acid degradation RHA1_ro01800 1901863 - 1900628 - | kynureninase RHA1_ro01801 1902714 - 1901860 - | tryptophan 2,3-dioxygenase RHA1_ro01802 1903693 - 1902860 - | hypothetical protein TERM 640 1903064 - 1903098 + g 100 -23 -3.25823 | GAGCACCTCGGCCAT TCGACGTGGCGTCGGA TCA TCCGACGCCAGGTCGA TTCGTGTCCGGGAAA TERM 641 1903155 - 1903115 - G 75 -10.4 -4.07568 | gap 1 TCGTGTCCGGGAAAA TCGGTCCGGATCGTCGAAC ACGA GGGCGACGAACCG-ACCGA GGTCTCGCCGCGACA RHA1_ro01803 1903838 - 1904383 + | bifunctional pyrimidine deaminase/reductase RHA1_ro01805 1907968 - 1906346 - | choline dehydrogenase RHA1_ro01804 1904770 - 1906443 + | esterase TERM 642 1907044 - 1907063 + gT 76 -13.6 -3.05384 | opp_overlap 1907038 1907041 CCCAGAACACGAGGC CCTCGACG TGAT CGTCGAGG TTCGATCCGACACCG RHA1_ro01806 1909533 - 1907965 - | amino acid transporter RHA1_ro01807 1911111 - 1909591 - | aldehyde dehydrogenase RHA1_ro01810 1913900 - 1912728 - | dioxyenase TERM 643 1913873 - 1913911 + g 72 -3.6 -4.56702 | GCGCGGAGGCAGGGG CGGGGGCTTGAACGTCCG GAG CGGACATAGATGTCACCG TTTCTTTCGTTGCCG RHA1_ro01811 1915089 - 1914283 - | transcriptional regulator RHA1_ro01812 1915261 - 1915632 + | 3-phenylpropionate dioxygenase ferredoxin subunit RHA1_ro01813 1915629 - 1916807 + | ferredoxin--NAD(+) reductase RHA1_ro01814 1917616 - 1916816 - | transcriptional regulator RHA1_ro01815 1917955 - 1920417 + | sarcosine dehydrogenase RHA1_ro01816 1920414 - 1921040 + | methenyltetrahydrofolate cyclohydrolase RHA1_ro01817 1921037 - 1921930 + | methylenetetrahydrofolate dehydrogenase (NADP+) RHA1_ro01818 1922044 - 1922892 + | formyltetrahydrofolate deformylase RHA1_ro01819 1923633 - 1922962 - | GntR family transcriptional regulator TERM 644 1924863 - 1924918 + G 71 -10.9 -3.57144 | CCGTTCGACCCGCGT CCGCCGATGGTCAGCTCCGGGGTGC GGATCG GCACCCCCGCACTCGCCACCCGCGG TTTCGACCTGGACGC glyA1 1923747 - 1925072 + | glycine hydroxymethyltransferase soxB 1925072 - 1926307 + | sarcosine oxidase beta subunit TERM 645 1926537 - 1926517 - g 81 -18.3 -2.72379 | opp_overlap 1926519, overlap 1926519 GGAACGGTGGAACCA CAGCGCCGG CTG CCGGCGCTG GTTCAACGCCGTACG TERM 646 1926519 - 1926535 + G 70 -15.1 -2.71144 | opp_overlap 1926517 1926519 AACGGTGGAACCACA GCGCCGG CTG CCGGCGC TGGTTCAACGCCGTA TERM 647 1926535 - 1926519 - g 72 -15.1 -2.90571 | opp_overlap 1926519, overlap 1926517 AACGGTGGAACCACA GCGCCGG CTG CCGGCGC TGGTTCAACGCCGTA soxD 1926341 - 1926619 + | sarcosine oxidase delta subunit soxA1 1926616 - 1929480 + | sarcosine oxidase soxG 1929473 - 1930066 + | sarcosine oxidase gamma subunit TERM 648 1930074 - 1930112 + F 100 -18.9 -3.80625 | CCGTGTAATCGCCAG TCGGTTCGGTGGGCGGC ACAGC GTCGTCCACCGGGCCGA TTTCCCTTCTGGAAG RHA1_ro01825 1930141 - 1931040 + | dihydropteroate synthase RHA1_ro01826 1931049 - 1931714 + | anthranilate/para-aminobenzoate synthases component I, C-terminal RHA1_ro01827 1931865 - 1932278 + | glycine cleavage system H protein RHA1_ro01828 1932283 - 1933665 + | L-serine ammonia-lyase RHA1_ro01829 1933667 - 1934362 + | hypothetical protein RHA1_ro01830 1934636 - 1934887 + | hypothetical protein RHA1_ro01831 1936906 - 1934957 - | DNA polymerase III RHA1_ro01832 1937034 - 1937387 + | hypothetical protein RHA1_ro01833 1937603 - 1938103 + | hypothetical protein TERM 649 1938123 - 1938149 + F 100 -23 -4.34402 | CTCCTGACCCCTTAA CCCGGGCCGCGC ACT GCGCGGTCCGGG TTTTCGTATGCCCAC RHA1_ro01834 1938236 - 1938727 + | hypothetical protein RHA1_ro01836 1941061 - 1939193 - | exodeoxyribonuclease V alpha chain RHA1_ro01835 1938745 - 1939275 + | hypothetical protein TERM 650 1940739 - 1940695 - GT 70 -13.7 -2.64616 | gap 3 GGTCGAGGTAGAGCA GTCCGCCGTCGGCCG-TGTCGA CGAG CCG-CAGCGGCCG-CAGCGGAC CCGCCGAACCACCGG RHA1_ro01837 1944369 - 1941058 - | exodeoxyribonuclease V beta subunit TERM 651 1942903 - 1942926 + g 72 -13.2 -3.18582 | gap 1 GGTGAGCGCGGCCAG CCGCACCCGGT CGG ACCGG-TGCGG TTGCTCGATGGCCTG recC 1947626 - 1944366 - | exodeoxyribonuclease V gamma subunit RHA1_ro01839 1949154 - 1947745 - | hypothetical protein RHA1_ro01840 1949361 - 1949867 + | hypothetical protein TERM 652 1949883 - 1949923 + T 72 -11.7 -3.44527 | overlap 1949884 CCGGACTTCCGCGTC ACGCGCCCTCCAGGGCCTC CCC GATCTCCTGGACGGCGCGG TTGTGCTGATCGGTG TERM 653 1949884 - 1949922 + T 75 -15.2 -2.66395 | overlap 1949883 CGGACTTCCGCGTCA CGCGCCCTCCAGGGCCTC CCC GATCTCCTGGACGGCGCG GTTGTGCTGATCGGT RHA1_ro01841 1950153 - 1949881 - | hypothetical protein RHA1_ro01842 1955003 - 1950186 - | cation transporting ATPase TERM 654 1950333 - 1950378 + g 75 -9.8 -4.07568 | gap 3 GGTGTACGCCGTGCT GCT-GCGGGCGGGCGTGATCGAC ATC GTCGA-C-TGATCGCCCGCAAGC TTTTCGAGCAGCCCC TERM 655 1955035 - 1955019 - R 78 -13.7 -3.28712 | opp_overlap 1955018 1955015 CGGCCGTGGCCACAA CCGCCGT TGC ACGGCGG ATCATGTCTGCGGTA RHA1_ro01843 1955908 - 1955111 - | hypothetical protein RHA1_ro01844 1957767 - 1956034 - | glycerone kinase TERM 656 1957572 - 1957531 - G 85 -17.4 -3.17075 | gap 2, opp_overlap 1957562, overlap 1957533 1957536 GTTGGGCGAACTGAA GATCAGGCCGGGGCAGGCTC CGGT GAGCATGCCCCGGCC-GA-C GAACCCGGCGTGCAG TERM 657 1957571 - 1957533 - G 93 -21.1 -3.14878 | gap 1, opp_overlap 1957562, overlap 1957531 1957536 TGGGCGAACTGAAGA TCAGGCCGGGGCAGGCTC CGGT GAGCATGCCCCGGCC-GA CGAACCCGGCGTGCA TERM 658 1957569 - 1957536 - G 95 -23.9 -2.77791 | opp_overlap 1957562, overlap 1957533 1957531 GCGAACTGAAGATCA GGCCGGGGCAGGCTC CGGT GAGCATGCCCCGGCC GACGAACCCGGCGTG RHA1_ro01845 1959723 - 1957777 - | aromatic ring hydroxylase RHA1_ro01846 1961038 - 1959725 - | major facilitator transporter RHA1_ro01847 1962085 - 1961174 - | LysR family transcriptional regulator RHA1_ro01848 1962936 - 1962109 - | sugar phosphate isomerase/ epimerase RHA1_ro01849 1964657 - 1962933 - | hypothetical protein TERM 659 1963597 - 1963563 - G 72 -13.5 -3.14132 | gap 1, opp_overlap 1963562 1963563, overlap 1963583 GGCCTCGTTGACGAA GCGGCGTCCGTCGGCG AGAA CGCCGATGG-CGCCGG GCTTTCCGCGGTCGA RHA1_ro01850 1965751 - 1964654 - | dehydrogenase TERM 660 1965333 - 1965351 + g 84 -16 -3.43492 | ACCGGAACGCCGATC CGGCCGTC GTC GACGGCCG TTCTGATGCGTCTCG RHA1_ro01851 1966548 - 1965751 - | 2,5-didehydrogluconate reductase RHA1_ro01852 1968494 - 1966545 - | flavin oxidoreductase aroE3 1969393 - 1968491 - | shikimate 5-dehydrogenase RHA1_ro01854 1970789 - 1969425 - | major facilitator transporter RHA1_ro01855 1971835 - 1970942 - | LysR family transcriptional regulator RHA1_ro01856 1971970 - 1972662 + | short chain dehydrogenase RHA1_ro01857 1973710 - 1972862 - | 6-chlorohydroxyquinol-1,2-dioxygenase RHA1_ro01858 1974786 - 1973722 - | maleylacetate reductase RHA1_ro01859 1975793 - 1974804 - | hypothetical protein RHA1_ro01860 1977424 - 1975832 - | 3-(3-hydroxylphenyl) propionate hydroxylase TERM 661 1977359 - 1977385 + g 75 -5 -4.63218 | CATCCCGGTAGGGCC GCTGCCGACG ATCGCGA CGTCGACTGC TTTTCTTCCCGCGCC RHA1_ro01861 1977572 - 1978402 + | IclR family transcriptional regulator RHA1_ro01862 1978433 - 1979986 + | MFS family benzoate membrane transporter RHA1_ro01863 1980028 - 1980867 + | alpha/beta fold family hydrolase RHA1_ro01864 1981739 - 1981020 - | mycothiol-dependent maleylpyruvate isomerase RHA1_ro01865 1982578 - 1981751 - | maleylpyruvate isomerase RHA1_ro01866 1983664 - 1982585 - | gentisate 1,2-dioxygenase RHA1_ro01867 1984498 - 1983728 - | IclR family transcriptional regulator RHA1_ro01868 1984607 - 1985812 + | aromatic acid transporter RHA1_ro01869 1985881 - 1987080 + | salicylate monooxygenase corA 1987097 - 1988140 + | CorA-like putative magnesium transport protein RHA1_ro01871 1989762 - 1988158 - | glutamate synthase RHA1_ro01872 1990410 - 1989787 - | TetR family transcriptional regulator RHA1_ro01873 1990493 - 1991428 + | hypothetical protein TERM 662 1992765 - 1992724 - g 80 -15.8 -3.15544 | opp_overlap 1992721 1992724, overlap 1992747 GCCCAGGTGCAGGAA GCCCTGGCCACCACCGTC TACAAC GCCGGTGGCTGCCAGAGC TACTTCCTCGACGTC RHA1_ro01874 1991425 - 1992906 + | cyclohexanone monooxygenase RHA1_ro01875 1994032 - 1992887 - | acyl-CoA dehydrogenase RHA1_ro01876 1995228 - 1994047 - | acetyl-CoA C-acetyltransferase RHA1_ro01877 1996877 - 1995321 - | choline dehydrogenase TERM 663 1995487 - 1995467 - G 70 -12.5 -3.35679 | opp_overlap 1995479 GTTCCGGATCGAGAA CGGCCATCG GAT CGGTGGCCG CACCCATCCTGGCGG RHA1_ro01878 1998433 - 1996874 - | amino acid permease RHA1_ro01879 1999963 - 1998461 - | betaine-aldehyde dehydrogenase TERM 664 1999392 - 1999414 + g 78 -13.4 -3.5393 | GTGAACGCGATGGTG CTGAGCGGGG TCA CCTCGCTCGG TTTGAGGACCATGGT RHA1_ro01880 2000189 - 2001136 + | aryl-alcohol dehydrogenase (NADP+) RHA1_ro01881 2002104 - 2001139 - | tyrosine protein phosphatase TERM 665 2002246 - 2002217 - H 71 -14.3 -2.78384 | gap 1, opp_overlap 2002213, overlap 2002186 GGCGCCCGCAGCAGA CTCGGGC-CGTCGG CAG CCGACGTGCCCGAC GAACGTGATTCATTG RHA1_ro01882 2002283 - 2003059 + | short chain dehydrogenase RHA1_ro01883 2003095 - 2003886 + | short chain dehydrogenase RHA1_ro01884 2003932 - 2004744 + | short chain dehydrogenase RHA1_ro01885 2004778 - 2005188 + | hypothetical protein TERM 666 2005219 - 2005202 - T 77 -12.7 -3.36803 | GAACCCGACTTACAA CGGGTCG CCCG CGACCCG TCCTGCCGGCAGCGT RHA1_ro01886 2005900 - 2005196 - | hypothetical protein RHA1_ro01887 2005928 - 2007217 + | hypothetical protein RHA1_ro01888 2007625 - 2007212 - | hypothetical protein RHA1_ro01889 2009238 - 2007622 - | hypothetical protein RHA1_ro01890 2010768 - 2009533 - | HipA like protein RHA1_ro01891 2011215 - 2011985 + | endonuclease IV RHA1_ro01892 2013445 - 2011982 - | sulfate transporter protein RHA1_ro01893 2013543 - 2014331 + | ABC amino acid transporter, periplasmic binding protein RHA1_ro01894 2014342 - 2015010 + | ABC amino acid transporter, permease component RHA1_ro01895 2015007 - 2015768 + | ABC amino acid transporter, ATP-binding component RHA1_ro01896 2016420 - 2015773 - | hypothetical protein TERM 667 2017078 - 2017123 + Gr 71 -9.5 -3.72576 | overlap 2017079 2017084 CGTACGCGCCGGACG TCGAACTCGCCGGCGCCGCCG CGGG CGGCATCCCCGCCGATTTCGG TTTGCTGCGCAGGAC RHA1_ro01897 2016414 - 2017634 + | triacylglycerol lipase RHA1_ro01898 2018489 - 2017638 - | lipid acyl hydrolase RHA1_ro01899 2020306 - 2018507 - | long-chain-fatty-acid--CoA ligase RHA1_ro01900 2020823 - 2020299 - | MarR family transcriptional regulator RHA1_ro01901 2021014 - 2021517 + | hypothetical protein RHA1_ro01903 2022561 - 2021959 - | hypothetical protein RHA1_ro01902 2021585 - 2022013 + | hypothetical protein RHA1_ro01904 2022603 - 2023931 + | hypothetical protein RHA1_ro01905 2023928 - 2025403 + | hypothetical protein RHA1_ro01906 2025400 - 2026503 + | ATPase RHA1_ro01907 2026500 - 2028668 + | hypothetical protein RHA1_ro01908 2028762 - 2029823 + | hypothetical protein RHA1_ro01909 2030034 - 2029831 - | hypothetical protein RHA1_ro01910 2031348 - 2030221 - | acyl CoA dehydrogenase RHA1_ro01911 2032533 - 2031358 - | acyl CoA dehydrogenase RHA1_ro01912 2033057 - 2032605 - | hypothetical protein TERM 668 2032824 - 2032847 + g 76 -13.8 -3.53343 | opp_overlap 2032824 ATCGACGACGAACAA CCGGTCGGGC CACG GCACGACCGG TTTGACGGCACCCTT TERM 669 2032847 - 2032824 - G 82 -13.8 -3.75292 | opp_overlap 2032824 ATCGACGACGAACAA CCGGTCGGGC CACG GCACGACCGG TTTGACGGCACCCTT RHA1_ro01913 2033575 - 2033060 - | hypothetical protein RHA1_ro01914 2034099 - 2033572 - | hypothetical protein RHA1_ro01915 2034289 - 2034750 + | alkaline shock protein RHA1_ro01916 2034747 - 2035061 + | hypothetical protein RHA1_ro01917 2035058 - 2035237 + | hypothetical protein RHA1_ro01918 2035230 - 2036210 + | hypothetical protein RHA1_ro01919 2036207 - 2036782 + | hypothetical protein RHA1_ro01920 2036817 - 2037089 + | hypothetical protein TERM 670 2037107 - 2037146 + T 100 -28 -3.15663 | opp_overlap 2037107 GTCACACCCCGAAAA CGCCAATGGCGCCCACCC CGGA GGGTGAGCGCCATTGGCG TTGGTGGAGCTAGAT TERM 671 2037146 - 2037107 - T 100 -30.2 -4.13014 | opp_overlap 2037107 GTCACACCCCGAAAA CGCCAATGGCGCCCACCC CGGA GGGTGAGCGCCATTGGCG TTGGTGGAGCTAGAT tufA 2038351 - 2037161 - | elongation factor Tu RHA1_ro01922 2040543 - 2038441 - | elongation factor G TERM 672 2040581 - 2040611 + r 86 -14.6 -3.52906 | TCGTGTATCGGGTGT CGGCCTCCCCGGTG TTC CACCAGCGGGGCCG TTGTCTCGAGTTGTA rpsG 2041175 - 2040705 - | 30S ribosomal protein S7 rpsL 2041549 - 2041175 - | 30S ribosomal protein S12 RHA1_ro01925 2042451 - 2041912 - | lipoprotein LprC RHA1_ro01926 2042987 - 2042463 - | lipoprotein LprB RHA1_ro01927 2043763 - 2043026 - | TetR family transcriptional regulator RHA1_ro01928 2044623 - 2043823 - | enoyl-CoA hydratase RHA1_ro01929 2045813 - 2044623 - | acyl-CoA dehydrogenase TERM 673 2045136 - 2045091 - G 77 -15.4 -3.16668 | gap 2, overlap 2045081 GAACAGCTGCATCAA CGCCGCGTCGGCCTCGCCGACG AGCG CGTCGGCG-GGCAGCCG-GACG TCGTCGAGGAACAGC RHA1_ro01930 2047819 - 2045810 - | methylcrotonoyl-CoA carboxylase, alpha chain RHA1_ro01931 2049363 - 2047828 - | methylcrotonoyl-CoA carboxylase, beta chain TERM 674 2049256 - 2049277 + g 70 -8.7 -3.82191 | gap 1, overlap 2049255 CAGTTCGATGCGTTC GCG-GGCGAG CAG CTTGCCGCGC TTCTTGTGCCGTTCG RHA1_ro01932 2050571 - 2049423 - | acyl-CoA dehydrogenase RHA1_ro01933 2052274 - 2050568 - | hypothetical protein RHA1_ro01934 2053062 - 2052271 - | hypothetical protein RHA1_ro01935 2053040 - 2054008 + | short chain dehydrogenase RHA1_ro01936 2054066 - 2054866 + | enoyl-CoA hydratase RHA1_ro01937 2054886 - 2055740 + | transporter protein, permease component RHA1_ro01938 2055778 - 2058288 + | membrane alanyl aminopeptidase RHA1_ro01939 2059720 - 2058278 - | pentachlorophenol monooxygenase TERM 675 2058632 - 2058599 - G 70 -12.4 -3.30124 | overlap 2058601 TCCGATCCCCGAGAA CATCCGGGCGATCG CGTCGC CGATCGCCGGGAAG CCGAGAAGCGCCGCC TERM 676 2058630 - 2058601 - G 72 -13.6 -3.21924 | overlap 2058599 CGATCCCCGAGAACA TCCGGGCGATCG CGTCGC CGATCGCCGGGA AGCCGAGAAGCGCCG RHA1_ro01940 2059827 - 2060387 + | TetR family transcriptional regulator RHA1_ro01941 2060695 - 2060363 - | hypothetical protein RHA1_ro01942 2061980 - 2060778 - | adenylate cyclase RHA1_ro01943 2062070 - 2062633 + | transcriptional regulator RHA1_ro01944 2062637 - 2063065 + | phenylacetic acid degradation protein RHA1_ro01945 2063097 - 2064041 + | threonine ammonia-lyase RHA1_ro01946 2064962 - 2064054 - | pirin-like protein RHA1_ro01947 2065497 - 2065051 - | MarR family transcriptional regulator TERM 677 2065304 - 2065249 - G 72 -13.3 -3.14132 | gap 2 TTCCCGCGTGACGAA TCCGGACCCGGCCAGCCGCTCGACGAG CCTG CTCAGCGA-CGGCTGGCTGAG-CAGGA TCTCCCGGTTGAGAT RHA1_ro01948 2066578 - 2065481 - | alkanal monooxygenase RHA1_ro01949 2068250 - 2066721 - | major facilitator superfamily multidrug resistance protein RHA1_ro01950 2068717 - 2068247 - | MarR family transcriptional regulator RHA1_ro01951 2069790 - 2068825 - | NADPH:quinone reductase RHA1_ro01952 2071489 - 2069828 - | ferredoxin--NADP(+) reductase RHA1_ro01953 2071553 - 2072422 + | hypothetical protein RHA1_ro01954 2073259 - 2072423 - | DNA binding protein RHA1_ro01955 2073394 - 2074407 + | oxidoreductase RHA1_ro01956 2074417 - 2074929 + | hypothetical protein RHA1_ro01957 2075162 - 2074935 - | hypothetical protein TERM 678 2075586 - 2075620 + G 71 -10.7 -3.55444 | CGCAGCCCTCGTCGA TCCCGAGTTCGCGCA GCGGA TGCACGACTTCGGGA TTTAGCAGATGAAGC RHA1_ro01958 2075254 - 2075625 + | transcriptional regulator RHA1_ro01959 2075629 - 2075814 + | hypothetical protein RHA1_ro01960 2077043 - 2075811 - | peptidase TERM 679 2077133 - 2077087 - R 90 -16 -3.69333 | gap 1, opp_overlap 2077088 2077089 2077091 2077095, overlap 2077089 2077092 GACAAGGCATGGAAA CAGATGAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTCGTC-G TTGGTGAGTGCTCGG TERM 680 2077088 - 2077133 + r 93 -18.4 -3.19463 | opp_overlap 2077087 2077089 2077092, overlap 2077089 2077091 2077095 ACAAGGCATGGAAAC AGATGAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTCGTCG TTGGTGAGTGCTCGG TERM 681 2077132 - 2077089 - R 100 -19.7 -3.42283 | opp_overlap 2077089 2077088 2077091 2077095, overlap 2077087 2077092 CAAGGCATGGAAACA GATGAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTCGTC GTTGGTGAGTGCTCG TERM 682 2077089 - 2077132 + r 100 -21.9 -2.51464 | opp_overlap 2077087 2077089 2077092, overlap 2077088 2077091 2077095 CAAGGCATGGAAACA GATGAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTCGTC GTTGGTGAGTGCTCG TERM 683 2077091 - 2077130 + r 89 -18.7 -2.79276 | opp_overlap 2077089 2077087 2077092, overlap 2077089 2077088 2077095 AGGCATGGAAACAGA TGAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTCG TCGTTGGTGAGTGCT TERM 684 2077129 - 2077092 - R 91 -20 -2.56124 | opp_overlap 2077091 2077089 2077088 2077095, overlap 2077089 2077087 GGCATGGAAACAGAT GAAGGCCCCACCCC CGAAGAGAGT GGGGTGGGGCCTTC GTCGTTGGTGAGTGC TERM 685 2077095 - 2077126 + r 86 -15.9 -3.29096 | opp_overlap 2077092 2077089 2077087, overlap 2077091 2077089 2077088 ATGGAAACAGATGAA GGCCCCACCCC CGAAGAGAGT GGGGTGGGGCC TTCGTCGTTGGTGAG rpoC 2081146 - 2077190 - | DNA-directed RNA polymerase subunit beta' TERM 686 2081259 - 2081224 - R 78 -15.4 -2.7728 | overlap 2081216 TTCAAATGTGAACTA CGCCCCCGGACCCTGA TTTC TCAGGACCCGGGGACC GAAACCTAGTTCGCG rpoB 2084771 - 2081265 - | DNA-directed RNA polymerase subunit beta TERM 687 2082375 - 2082396 + g 71 -11.5 -3.53811 | CTCGGGGGTCAGCTC GGTCTCGCC CTTC GGCGTGACC TTTCCGACCAGTACG TERM 688 2083214 - 2083248 + g 79 -15 -3.33261 | GGTCCTCTTCGTCCG CGGTCAGGTAGTCGAC CTG GTCGGTGACCTGGCCG TTCTCGACCTTGCGG RHA1_ro01963 2085182 - 2087344 + | hypothetical protein TERM 689 2087324 - 2087365 + T 93 -18.9 -3.12351 | opp_overlap 2087324 2087326 CCGTCACCGCAACAA CAGATTCCCATCCAATCGT GAAG ACGATCGGATGGGAATCGG TTCACTCTGCCGGAG TERM 690 2087365 - 2087324 - T 100 -21.1 -3.65046 | opp_overlap 2087324, overlap 2087326 CCGTCACCGCAACAA CAGATTCCCATCCAATCGT GAAG ACGATCGGATGGGAATCGG TTCACTCTGCCGGAG TERM 691 2087363 - 2087326 - T 100 -22.3 -3.40611 | opp_overlap 2087324, overlap 2087324 GTCACCGCAACAACA GATTCCCATCCAATCGT GAAG ACGATCGGATGGGAATC GGTTCACTCTGCCGG RHA1_ro01964 2088343 - 2087453 - | hypothetical protein RHA1_ro01965 2089100 - 2088423 - | hypothetical protein RHA1_ro01966 2090401 - 2089154 - | Mce family protein RHA1_ro01967 2091699 - 2090398 - | Mce family protein RHA1_ro01968 2092952 - 2091696 - | Mce family protein RHA1_ro01969 2093947 - 2092952 - | Mce family protein TERM 692 2093138 - 2093155 + g 71 -11.3 -3.61398 | ATTGGCCTTGAGGAT CTCGACG ACAC CGTCGAG TTGTTCGAGCGCGGG RHA1_ro01970 2095023 - 2093944 - | Mce family protein RHA1_ro01971 2096378 - 2095020 - | Mce family protein RHA1_ro01972 2097199 - 2096375 - | hypothetical protein RHA1_ro01973 2098034 - 2097240 - | ABC transporter permease RHA1_ro01974 2099135 - 2098044 - | bifunctional ABC transport system TERM 693 2099371 - 2099404 + r 100 -26.9 -3.29947 | opp_overlap 2099371, overlap 2099399 TCCGCGGACGCAAAA GAGGGCCACTCCCCA CGGA TGGGGAGTGGCCCTC TTCGTCTGCTCGGTG TERM 694 2099404 - 2099371 - R 100 -26.9 -4.18018 | opp_overlap 2099371 2099399 TCCGCGGACGCAAAA GAGGGCCACTCCCCA CGGA TGGGGAGTGGCCCTC TTCGTCTGCTCGGTG rplL 2099827 - 2099441 - | 50S ribosomal protein L7/L12 rplJ 2100466 - 2099906 - | 50S ribosomal protein L10 TERM 695 2100275 - 2100253 - G 72 -6.2 -4.2828 | TCGGACCGACGAAAA GGTCATCAAG GCC CTCGACGCCC GCTTCAGCAGCGGCA TERM 696 2100583 - 2100558 - H 100 -16.9 -4.24948 | gap 1 CCACGACATGCAAAA CGCCCCG-GTGC AGG GCACACGGGGCG TGAAAGGAAACGATA TERM 697 2101721 - 2101745 + G 70 -12.1 -3.35679 | GCACCCGATCCTCGA CCTGCGGCTGT TCC GCAACCGCAGG TTCTCCCTGCCCGCC RHA1_ro01977 2100927 - 2102546 + | antibiotic efflux protein TERM 698 2102600 - 2102558 - T 100 -25 -4.58395 | opp_overlap 2102561 2102563, overlap 2102559 CTGATCCCGGAAAAA GCAGTTCGGCCGGTACGGGA GAT TTCCGTACCGGCCGAACTGT GTGAAGCGTGACTTA TERM 699 2102599 - 2102559 - T 100 -28.5 -3.34716 | opp_overlap 2102561 2102563, overlap 2102558 TGATCCCGGAAAAAG CAGTTCGGCCGGTACGGGA GAT TTCCGTACCGGCCGAACTG TGTGAAGCGTGACTT TERM 700 2102561 - 2102597 + T 100 -27.5 -2.87931 | opp_overlap 2102559 2102558, overlap 2102563 ATCCCGGAAAAAGCA GTTCGGCCGGTACGGGA GAT TTCCGTACCGGCCGAAC TGTGTGAAGCGTGAC rplA 2103329 - 2102613 - | 50S ribosomal protein L1 rplK 2103921 - 2103487 - | 50S ribosomal protein L11 nusG 2104775 - 2103981 - | transcription antitermination protein NusG secE 2105358 - 2104906 - | preprotein translocase subunit SecE RHA1_ro01983 2106072 - 2105647 - | (3R)-hydroxyacyl-ACP dehydratase subunit HadB RHA1_ro01984 2106622 - 2106059 - | hypothetical protein rpmG 2106879 - 2106712 - | 50S ribosomal protein L33 TERM 701 2107344 - 2107304 - H 100 -25 -3.14132 | gap 1, opp_overlap 2107307 2107309 2107312, overlap 2107307 2107312 GGTCCCGGCCACGAA CGACAGAACCCCGGTGAGC TGTC GCTCACCGGGGTTCTGT-G TGTGGCAGATGTAGG TERM 702 2107307 - 2107342 + H 100 -27.8 -2.88249 | opp_overlap 2107304 2107307 2107312, overlap 2107309 2107312 CCCGGCCACGAACGA CAGAACCCCGGTGAGC TGTC GCTCACCGGGGTTCTG TGTGTGGCAGATGTA TERM 703 2107342 - 2107307 - H 100 -27.8 -2.77899 | opp_overlap 2107307 2107309 2107312, overlap 2107304 2107312 CCCGGCCACGAACGA CAGAACCCCGGTGAGC TGTC GCTCACCGGGGTTCTG TGTGTGGCAGATGTA TERM 704 2107309 - 2107340 + H 100 -24.6 -2.9914 | opp_overlap 2107307 2107304 2107312, overlap 2107307 2107312 CGGCCACGAACGACA GAACCCCGGTGAGC TGTC GCTCACCGGGGTTC TGTGTGTGGCAGATG TERM 705 2107337 - 2107312 - H 100 -20.5 -3.61404 | opp_overlap 2107312 2107309 2107307, overlap 2107307 2107304 CCACGAACGACAGAA CCCCGGTGAGC TGTC GCTCACCGGGG TTCTGTGTGTGGCAG TERM 706 2107312 - 2107337 + H 100 -20.5 -3.64198 | opp_overlap 2107307 2107304 2107312, overlap 2107309 2107307 CCACGAACGACAGAA CCCCGGTGAGC TGTC GCTCACCGGGG TTCTGTGTGTGGCAG RHA1_ro01989 2107629 - 2108120 + | nucleotide-binding protein RHA1_ro01990 2109051 - 2108191 - | heat shock protein HtpX RHA1_ro01991 2110235 - 2109195 - | polyprenyl synthetase TERM 707 2110472 - 2110525 + G 74 -13.8 -3.36515 | gap 2, overlap 2110470 CGGCCGGTTCCTCGG CTGCCGCGTGGGCG-GCGC-GCGCCG GACG TGACGTGGTGCTCGCCGACGCGGCGG TGTTTCCCCGTGACA RHA1_ro01992 2110381 - 2111643 + | dehydrogenase ubiE 2112345 - 2111647 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 708 2112353 - 2112407 + r 100 -22.7 -4.20367 | gap 1, opp_overlap 2112354 2112363, overlap 2112354 GTTGCCACGCCCGAA ACGCTAC-CAACCGCGCCCGGCGCCG ATGT CGGCGCCGGGCGCGGGGGCGAGGCGG TTATTTCTTGGAGAC TERM 709 2112406 - 2112354 - R 100 -24 -3.55444 | gap 1, opp_overlap 2112354 2112353, overlap 2112363 TTGCCACGCCCGAAA CGCTAC-CAACCGCGCCCGGCGCCG ATGT CGGCGCCGGGCGCGGGGGCGAGGCG GTTATTTCTTGGAGA TERM 710 2112354 - 2112406 + r 100 -26.2 -3.11738 | gap 1, opp_overlap 2112354 2112363, overlap 2112353 TTGCCACGCCCGAAA CGCTAC-CAACCGCGCCCGGCGCCG ATGT CGGCGCCGGGCGCGGGGGCGAGGCG GTTATTTCTTGGAGA TERM 711 2112396 - 2112363 - R 100 -32.5 -3.2048 | opp_overlap 2112354 2112353, overlap 2112354 CCGAAACGCTACCAA CCGCGCCCGGCGCCG ATGT CGGCGCCGGGCGCGG GGGCGAGGCGGTTAT RHA1_ro01994 2113799 - 2112408 - | succinate-semialdehyde dehydrogenase (NAD(P)+) RHA1_ro01995 2114986 - 2113841 - | glycosyl transferase RHA1_ro01996 2115499 - 2115059 - | hypothetical protein menD 2117121 - 2115496 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase RHA1_ro01998 2117215 - 2117811 + | hypothetical protein RHA1_ro01999 2117873 - 2118700 + | siderophore interacting protein TERM 712 2118702 - 2118752 + T 100 -25.4 -3.42354 | opp_overlap 2118706, overlap 2118703 2118745 ACGCTGCCAACTGAC CACAGGTGAGTGGCACGGCACGCC CGG GGCGCGCCGTGCCACTCACCCGGC TTCTCAGTTGGCGTG TERM 713 2118703 - 2118751 + T 100 -28.9 -2.65091 | opp_overlap 2118706, overlap 2118702 2118745 CGCTGCCAACTGACC ACAGGTGAGTGGCACGGCACGCC CGG GGCGCGCCGTGCCACTCACCCGG CTTCTCAGTTGGCGT TERM 714 2118748 - 2118706 - T 100 -35.8 -2.82933 | opp_overlap 2118703 2118702 2118745 TGCCAACTGACCACA GGTGAGTGGCACGGCACGCC CGG GGCGCGCCGTGCCACTCACC CGGCTTCTCAGTTGG RHA1_ro02000 2119202 - 2118756 - | hypothetical protein TERM 715 2119270 - 2119260 - R 74 -2.4 -4.83269 | opp_overlap 2119260 2119260, overlap 2119253 ACACTATACGAAAAA CCGG ACT CCGC GTTGTTCGAGCAGGC RHA1_ro02001 2120249 - 2119248 - | O-succinylbenzoate synthase RHA1_ro02002 2120907 - 2120254 - | hypothetical protein RHA1_ro02003 2120981 - 2121874 + | naphthoate synthase RHA1_ro02004 2124141 - 2121904 - | arylsulfatase TERM 716 2123035 - 2123090 + g 82 -14.6 -3.41051 | gap 1, overlap 2123023 GTTGTCGGTCTTCGG CGACCCCAGGACGTCGAGGCCACCGAG TTC CTCGAGGGCCGCGATGTGCTG-GGCCG TTGTGGTGGGAATGC RHA1_ro02005 2124385 - 2124834 + | hypothetical protein RHA1_ro02006 2124838 - 2125233 + | glyoxylase pitA 2125313 - 2126521 + | low-affinity inorganic phosphate transporter RHA1_ro02008 2126532 - 2126798 + | hypothetical protein RHA1_ro02009 2126844 - 2127197 + | hypothetical protein RHA1_ro02010 2127200 - 2127499 + | hypothetical protein TERM 717 2128423 - 2128469 + G 70 -15.1 -2.82516 | gap 1 GCCGTCCGGGAATGC GCGGTGAT-CGGCCTCCCCGAC GAGC GACTGGGACGCCGCGTCACCGC TGTCGTCGTCGCCGA RHA1_ro02011 2127496 - 2128641 + | O-succinylbenzoic acid--CoA ligase RHA1_ro02012 2128811 - 2129848 + | hypothetical protein RHA1_ro02013 2129845 - 2130831 + | ABC transporter, ATP-binding protein RHA1_ro02014 2130828 - 2131658 + | ABC transporter, permease component TERM 718 2131665 - 2131713 + T 100 -24 -3.92522 | opp_overlap 2131670 2131673, overlap 2131667 2131670 AAGGCCTGACAACCG AAGAAGGAGCGAGCCGGTGGAC GCGGG GTCCACCGGCTCGCTTCGTCTA TTTCTCCAGTTCGGG TERM 719 2131667 - 2131711 + T 100 -26.6 -3.55191 | opp_overlap 2131670 2131673, overlap 2131665 2131670 GGCCTGACAACCGAA GAAGGAGCGAGCCGGTGGAC GCGGG GTCCACCGGCTCGCTTCGTC TATTTCTCCAGTTCG TERM 720 2131708 - 2131670 - T 100 -24.7 -3.75766 | opp_overlap 2131667 2131665 2131670, overlap 2131673 CTGACAACCGAAGAA GGAGCGAGCCGGTGGAC GCGGG GTCCACCGGCTCGCTTC GTCTATTTCTCCAGT TERM 721 2131670 - 2131708 + T 100 -26.9 -2.60065 | opp_overlap 2131670 2131673, overlap 2131667 2131665 CTGACAACCGAAGAA GGAGCGAGCCGGTGGAC GCGGG GTCCACCGGCTCGCTTC GTCTATTTCTCCAGT TERM 722 2131705 - 2131673 - T 100 -25 -2.96731 | opp_overlap 2131670 2131667 2131665, overlap 2131670 ACAACCGAAGAAGGA GCGAGCCGGTGGAC GCGGG GTCCACCGGCTCGC TTCGTCTATTTCTCC RHA1_ro02015 2131878 - 2131711 - | Sec-independent protein translocase protein RHA1_ro02016 2132552 - 2131878 - | hypothetical protein RHA1_ro02017 2134186 - 2132582 - | L-amino-acid oxidase RHA1_ro02018 2134389 - 2135903 + | amino acid transporter RHA1_ro02019 2135903 - 2136643 + | IclR family transcriptional regulator RHA1_ro02020 2138521 - 2136653 - | hypothetical protein TERM 723 2138942 - 2138979 + H 75 -14.1 -3.01712 | gap 1, opp_overlap 2138928 AGCCACGGACGTTCC CGCGGCT-GCCCGCGCGC CCA GTTCGTGGGCGAGTCGCG TCTTGCCGGCACCGC RHA1_ro02021 2139987 - 2140856 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase RHA1_ro02022 2141268 - 2140870 - | hypothetical protein RHA1_ro02023 2141876 - 2141310 - | ATP-dependent Clp protease ATP-binding subunit RHA1_ro02024 2142134 - 2141883 - | hypothetical protein RHA1_ro02025 2142918 - 2142166 - | acyltransferase TERM 724 2143050 - 2143040 - H 81 -3.2 -5.00884 | ATTTCGGGTAAAAAA GACC TGT GATC CGCCCGGCCATTTCC TERM 725 2143100 - 2143113 + G 71 -9.5 -3.74693 | opp_overlap 2143098 AAGACATCGAAATCG CGGCG GGTG CGCCG TTTCGTGACATCGGA RHA1_ro02026 2143045 - 2143590 + | acetyltransferase RHA1_ro02027 2144687 - 2143578 - | cysteine synthase RHA1_ro02028 2145061 - 2144684 - | hypothetical protein RHA1_ro02029 2145180 - 2145476 + | hypothetical protein TERM 726 2145804 - 2145774 - g 78 -13.2 -3.61715 | overlap 2145784 2145785 GACCCGTCGGAAGAA GTCCGACGAACCCG AGG CCGGTCCGGCGGAC CCCGCCGGGTGAGCC RHA1_ro02030 2145613 - 2145816 + | hypothetical protein TERM 727 2145819 - 2145858 + T 82 -15.7 -3.05384 | gap 1, opp_overlap 2145785, overlap 2145822 CCCCGCCGGGTGAGC CGAAGCCG-GGGTGCCGG TCGAC CCGGCACCCTCGGCGTCA TTGCCTCAGCGACGA TERM 728 2145822 - 2145855 + T 78 -16 -2.75064 | gap 1, opp_overlap 2145785, overlap 2145819 CGCCGGGTGAGCCGA AGCCG-GGGTGCCGG TCGAC CCGGCACCCTCGGCG TCATTGCCTCAGCGA RHA1_ro02031 2147168 - 2145864 - | hypothetical protein ccsB 2148241 - 2147264 - | cytochrome c assembly membrane protein RHA1_ro02033 2149902 - 2148238 - | cytochrome c biogenesis membrane protein RHA1_ro02034 2150729 - 2149899 - | cytochrome c biogenesis membrane protein TERM 729 2150494 - 2150443 - G 83 -14.5 -3.59087 | gap 3, opp_overlap 2150472 2150478, overlap 2150435 2150432 2150456 AATACCACGGTGAAA CCGGCGACGAACAGGGCCGCGGCGCC CGC GAC-CCGCAGCC--GTCCGTCGGCGG CAGTCTTCGTGCGGG TERM 730 2150476 - 2150456 - G 80 -16.1 -3.13899 | opp_overlap 2150472, overlap 2150443 AACCGGCGACGAACA GGGCCGCGG CGC CCGCGACCC GCAGCCGTCCGTCGG RHA1_ro02035 2151325 - 2150726 - | thioredoxin RHA1_ro02036 2151981 - 2151322 - | hypothetical protein hemL 2153386 - 2152061 - | glutamate-1-semialdehyde aminotransferase RHA1_ro02038 2153960 - 2153448 - | lactoylglutathione lyase and related lyase RHA1_ro02039 2154721 - 2153957 - | oxidoreductase RHA1_ro02040 2155963 - 2154755 - | 4-hydroxyphenylpyruvate dioxygenase RHA1_ro02041 2155947 - 2156594 + | AsnC family transcriptional regulator RHA1_ro02042 2157039 - 2156554 - | transcriptional regulator RHA1_ro02043 2157089 - 2157943 + | hydrolase RHA1_ro02044 2158247 - 2157987 - | hypothetical protein RHA1_ro02045 2158580 - 2158251 - | hypothetical protein RHA1_ro02046 2158657 - 2159160 + | hypothetical protein RHA1_ro02047 2159221 - 2161167 + | acyl-CoA oxidase RHA1_ro02048 2161913 - 2161431 - | hypothetical protein TERM 731 2161960 - 2161950 - R 72 -6.8 -4.25104 | GGCCCGCGAGGAAAA CGTG GGG CACG TCAGGAGAGGGCGCC RHA1_ro02049 2162774 - 2162169 - | hypothetical protein RHA1_ro02050 2163834 - 2162803 - | delta-aminolevulinic acid dehydratase TERM 732 2163589 - 2163611 + g 70 -14.8 -2.78384 | GACCGCTTCCGTCGC CGCCCGACGC AGC GAGTCGGGCG TGTGCTGGAAGACGC RHA1_ro02051 2165421 - 2163856 - | uroporphiryn-III C-methyltransferase hemC 2166462 - 2165497 - | porphobilinogen deaminase hemA 2167898 - 2166459 - | glutamyl-tRNA reductase RHA1_ro02054 2168842 - 2167895 - | redox-sensing transcriptional repressor Rex RHA1_ro02055 2169150 - 2168890 - | hypothetical protein RHA1_ro02056 2169521 - 2170315 + | phosphoserine phosphatase RHA1_ro02057 2171346 - 2170336 - | hypothetical protein RHA1_ro02058 2172434 - 2171352 - | UDP-glucose 4-epimerase TERM 733 2172542 - 2172592 + r 75 -6.7 -4.41047 | gap 2, opp_overlap 2172547 2172550, overlap 2172543 CGCGGAGGGCGCCGT G-GAAACGAC-GGATGCCCGCCACC GGA GGTGACGGGCATCCAGACGCAACTC TTTTACTTACCGAGT TERM 734 2172543 - 2172590 + r 74 -10.4 -3.8125 | gap 1, opp_overlap 2172547 2172550, overlap 2172542 GCGGAGGGCGCCGTG GAAACGAC-GGATGCCCGCCACC GGA GGTGACGGGCATCCAGACGCAAC TCTTTTACTTACCGA TERM 735 2172586 - 2172547 - R 100 -20.8 -3.53091 | gap 1, opp_overlap 2172543 2172542, overlap 2172550 AGGGCGCCGTGGAAA CGAC-GGATGCCCGCCACC GGA GGTGACGGGCATCCAGACG CAACTCTTTTACTTA TERM 736 2172582 - 2172550 - R 100 -22.1 -2.90496 | opp_overlap 2172543 2172542, overlap 2172547 GCGCCGTGGAAACGA CGGATGCCCGCCACC GGA GGTGACGGGCATCCA GACGCAACTCTTTTA RHA1_ro02059 2172696 - 2172595 - | hypothetical protein RHA1_ro02060 2173153 - 2172917 - | excisionase TERM 737 2173109 - 2173136 + g 100 -13.4 -5.0133 | gap 1, overlap 2173110 GGCCAGGGCCGGTTG TCCGTCC-GGGGC CGA GCCCCTGGACGGC TTTTTTGCAGACGTC TERM 738 2173110 - 2173135 + g 85 -16.9 -3.60316 | gap 1, overlap 2173109 GCCAGGGCCGGTTGT CCGTCC-GGGGC CGA GCCCCTGGACGG CTTTTTTGCAGACGT RHA1_ro02061 2174094 - 2173279 - | pyrroline-5-carboxylate reductase TERM 739 2173355 - 2173342 - G 72 -3.8 -4.59109 | opp_overlap 2173318 GAGAGCGTCGAAAAA GGCT GTTCGG AGCC CGTTTCCCTCCAGCC RHA1_ro02062 2175624 - 2174131 - | hypothetical protein RHA1_ro02063 2176655 - 2175714 - | hypothetical protein RHA1_ro02064 2177904 - 2176663 - | hypothetical protein RHA1_ro02065 2178854 - 2177901 - | exopolyphosphatase RHA1_ro02066 2178921 - 2179706 + | hypothetical protein RHA1_ro02067 2179776 - 2180111 + | hypothetical protein regX3 2180837 - 2180148 - | response regulator, two-component system senX3 2182027 - 2180834 - | sensor kinase, two-component system TERM 740 2182124 - 2182175 + r 86 -18.6 -2.60194 | opp_overlap 2182125, overlap 2182125 CTTCGTCCGCAGTTA ACCTGCCGTTGGCCGGACGTCCCG CGAA CGGGACGTCCGGCCGGACGCACGA GTTACTTCCCGCCCT TERM 741 2182125 - 2182176 + r 88 -15.9 -3.34013 | gap 2, opp_overlap 2182125, overlap 2182124 TTCGTCCGCAGTTAA C-C-TGCCGTTGGCCGGACGTCCCG CGAA CGGGACGTCCGGCCGGACGCACGAG TTACTTCCCGCCCTG TERM 742 2182174 - 2182125 - R 93 -19.4 -3.05384 | opp_overlap 2182124 2182125 TTCGTCCGCAGTTAA CCTGCCGT-TGGCCGGACGTCCCG CGAA CGGGACGTCCGGCCGGACG-CACG AGTTACTTCCCGCCC gpmA 2182932 - 2182177 - | phosphoglycerate mutase TERM 743 2182954 - 2182908 - G 73 -12.3 -3.44051 | opp_overlap 2182914 GGCGGAGCAGCACAA GGGTTCCGGTACTCATGCC GTTCATCCT GGCATGCCTCCCGGAACCC TCGCGCCGTGAACCC RHA1_ro02071 2184568 - 2182976 - | long-chain-fatty-acid--CoA ligase TERM 744 2183259 - 2183237 - G 70 -9 -3.9461 | opp_overlap 2183252 GTGCGTCAACAACAA TGCCTCCAGC TCG GCGGGCGGCA CCTGGTAGCCCTTGT RHA1_ro02072 2185210 - 2184719 - | hypothetical protein RHA1_ro02073 2186565 - 2185207 - | glycosyl transferase TERM 745 2185504 - 2185470 - G 73 -12.1 -3.40403 | opp_overlap 2185464, overlap 2185471 GCCCGTCCACGAGAA GCCCGGTTTCGCCGT TCCGG ACGGCGACACCGAGA CCCCCCACGTTCGCG TERM 746 2185685 - 2185654 - G 72 -14.4 -3.14132 | gap 1, opp_overlap 2185661 CTGCGGCGGGAGGAA CGTCACCCGCGCGGC GAT GCCGAGCGAG-GACG CGAGTTCGATCAAGG RHA1_ro02074 2187354 - 2186578 - | chloride peroxidase RHA1_ro02075 2188553 - 2187351 - | major facilitator transporter RHA1_ro02077 2189904 - 2189320 - | hypothetical protein RHA1_ro02076 2188610 - 2189383 + | LMBE-related protein RHA1_ro02078 2190436 - 2191467 + | hypothetical protein RHA1_ro02079 2192125 - 2191460 - | isochorismatase family protein TERM 747 2192790 - 2192766 - g 72 -14.9 -2.90723 | TCACCGTGAACGAGA CGGCCCGGTCC ACC GGCCCGGACCG GAAACTGATGGAACG RHA1_ro02080 2192246 - 2192833 + | hypothetical protein TERM 748 2192873 - 2192914 + T 100 -23.2 -2.62983 | opp_overlap 2192874 GACGGACGCACACGA ATTCGTCAGCCGCACAGG CTATTA CCTGTGCGGCTGACGAAG TGCTGTGACGCTAGA TERM 749 2192913 - 2192874 - T 100 -27.4 -3.28119 | opp_overlap 2192873 ACGGACGCACACGAA TTCGTCAGCCGCACAGGC TATT ACCTGTGCGGCTGACGAA GTGCTGTGACGCTAG RHA1_ro02081 2194199 - 2192925 - | ROK family transcriptional regulator RHA1_ro02083 2195691 - 2196638 + | taurine dioxygenase RHA1_ro02082 2194724 - 2196664 + | major facilitator transporter RHA1_ro02084 2196648 - 2197394 + | short chain dehydrogenase TERM 750 2197538 - 2197585 + T 78 -12.7 -3.48276 | gap 1, opp_overlap 2197534 2197535 2197538 TTCGATCGAAACGGA CTGTCGGG-GTCGTCCGTCGAC CCCTC GACAGCGGACGACTCCCCACAG TTGTGTGAACCGAGA RHA1_ro02085 2198870 - 2197686 - | hypothetical protein murB 2199919 - 2198903 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 751 2199238 - 2199201 - G 72 -14.4 -3.21395 | gap 2, opp_overlap 2199211, overlap 2199199 ATTGCTGCGAGAACA TTCACCAACTCGCCGTCG GGCA CGACGG-G-GTTGGTGAA GAAGGAGCCCGCGCT RHA1_ro02087 2199978 - 2200517 + | hypothetical protein RHA1_ro02088 2200569 - 2201069 + | hypothetical protein RHA1_ro02089 2201091 - 2201888 + | hypothetical protein RHA1_ro02090 2202223 - 2201927 - | hypothetical protein RHA1_ro02091 2202226 - 2203773 + | hypothetical protein RHA1_ro02092 2204397 - 2203792 - | hypothetical protein RHA1_ro02093 2204523 - 2205290 + | hypothetical protein RHA1_ro02094 2206019 - 2205303 - | deoxyribose-phosphate aldolase RHA1_ro02095 2206026 - 2206859 + | ubiquinone/menaquinone biosynthesis methyltransferase purU 2206873 - 2207757 + | formyltetrahydrofolate deformylase RHA1_ro02097 2208637 - 2207771 - | GntR family transcriptional regulator RHA1_ro02098 2208636 - 2209388 + | 4-hydroxy-2-oxovalerate aldolase TERM 752 2209458 - 2209430 - g 70 -12.4 -3.34962 | gap 1 CCCGACAGCGCAGAA GCGGCGGCCCACC CCAA GGTGGGCCGT-GC CCGGTGGACCATCGC RHA1_ro02099 2209385 - 2210737 + | anion cation symporter RHA1_ro02100 2210739 - 2211539 + | nitrilase TERM 753 2211568 - 2211622 + T 100 -19 -3.33087 | gap 3 GTTCAGGCTCACAGG CTATTCGCGTTCGTTGCCAGGATGGTC GTGA GAC-A-CCTGGCAACGAACGCGGA-AG TTGTCAACCTGTATT RHA1_ro02101 2212532 - 2211675 - | chloride peroxidase RHA1_ro02102 2213494 - 2212724 - | MerR family transcriptional regulator RHA1_ro02103 2214000 - 2213707 - | hypothetical protein TERM 754 2214058 - 2214030 - R 100 -23.2 -3.7108 | AGGTCGACACGCAAA CGGCCCCCGCAC CGAAC GTGCGGGGGCCG AAAAGCGTGAAGGAT RHA1_ro02104 2214903 - 2214073 - | hypothetical protein RHA1_ro02105 2215402 - 2214896 - | transcriptional regulator RHA1_ro02106 2216900 - 2215506 - | hypothetical protein RHA1_ro02107 2216968 - 2217663 + | transcriptional regulator RHA1_ro02108 2217712 - 2218017 + | hypothetical protein RHA1_ro02109 2219479 - 2218004 - | monooxygenase RHA1_ro02110 2219515 - 2220375 + | hypothetical protein TERM 755 2220661 - 2220690 + G 81 -7.7 -4.63218 | GTCCCGACGCTACGC CCGACCTGCATCG ACGA CAAGGCAGGCCGG TTTTCTTCGCGCCGC RHA1_ro02111 2220388 - 2220714 + | hypothetical protein RHA1_ro02112 2220724 - 2221281 + | hypothetical protein RHA1_ro02113 2221298 - 2221453 + | hypothetical protein TERM 756 2221531 - 2221519 - f 73 -9.1 -3.85698 | CGGTCGGTTTACAAA CCCGA AGT TCGGG AATCCCCGTGGCATG RHA1_ro02114 2221544 - 2222842 + | glycosyltransferase RHA1_ro02115 2223173 - 2222865 - | anti-sigma factor antagonist RHA1_ro02116 2224296 - 2223532 - | hypothetical protein RHA1_ro02117 2224518 - 2224952 + | anti-sigma factor RHA1_ro02118 2224949 - 2225746 + | RNA polymerase sigma factor SigF RHA1_ro02119 2226824 - 2225748 - | NADP-dependent alcohol dehydrogenase TERM 757 2226863 - 2226820 - G 87 -19.6 -3.05384 | overlap 2226824 GTTTGCGCGACCGAA CGCACGTTCGGAGCCACCGC TGAC GCGGTGACCCCGAACACGCC TCAGAAATCAGGCCT TERM 758 2226859 - 2226824 - G 82 -19.8 -2.54896 | overlap 2226820 GCGCGACCGAACGCA CGTTCGGAGCCACCGC TGAC GCGGTGACCCCGAACA CGCCTCAGAAATCAG metE1 2229165 - 2226871 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 759 2229223 - 2229268 + r 100 -22.7 -2.79915 | opp_overlap 2229242 TCTGGGCTCGATGCA CCTGTGCGCCTCTCACAACCG CCAG TGGTCGTGAAAGGCGCACAGG TGTAGTCGCCTACCT hbd1 2230189 - 2229293 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 760 2230214 - 2230262 + r 100 -20.2 -3.16564 | gap 1 TTTTCGTCTAGTGGA GTCGTCGCCCGGGGAGGGGCCCG GTTA CAGGCCCCTCCCCGGG-GTCGGG TTGATCAGGTGAAAC RHA1_ro02122 2231598 - 2230309 - | isocitrate lyase TERM 761 2231529 - 2231561 + g 71 -11.4 -3.60805 | gap 1 TGCGGGTTACTCCCT TCCAGCGCGGGTTGG TGTC CCAATCC-TGCTGGA TTTCAGCTGCGGTCT TERM 762 2231820 - 2231809 - g 76 -3 -4.80882 | ATCGGAGAGGAAAAA TACT CGCC AGTA GCAAAAAGCCGCAGG RHA1_ro02123 2231778 - 2232290 + | hypothetical protein TERM 763 2233415 - 2233364 - g 80 -16.6 -3.17212 | gap 1, opp_overlap 2233405 CGACTACCTCACCAA GTTCGGGTACAGCCCCGAGCAGG CCTACCT CCTGCTCGGCGCCGC-CCCGATC GAGGGCCGGTTGTCG RHA1_ro02124 2232312 - 2233571 + | formamidase RHA1_ro02125 2233711 - 2235123 + | DNA binding protein RHA1_ro02126 2235302 - 2236648 + | amino acid ABC transporter substrate-binding protein RHA1_ro02127 2236693 - 2237577 + | ABC branched amino acid transporter, permease component RHA1_ro02128 2237574 - 2238692 + | ABC branched amino acid transporter, permease component RHA1_ro02129 2238689 - 2239534 + | ABC branched-chain amino acid transporter, ATP-binding component RHA1_ro02130 2239521 - 2240234 + | ABC branched-chain amino acid transporter, ATP-binding component RHA1_ro02131 2240234 - 2240932 + | GntR family transcriptional regulator TERM 764 2240939 - 2240957 + F 81 -7.4 -4.57073 | CGGGATTGAGACAGT TGTCCAAC TCT GGTGGACA TTTTTCCCACCAATG TERM 765 2241007 - 2240975 - f 77 -13.3 -3.39895 | TTTCCCACCAATGAA CCGAGCGGGTGCTAG CGT CTTGCTACCGCTCGG TAACACAGGTTGGGA TERM 766 2241733 - 2241756 + G 78 -13.8 -3.5399 | opp_overlap 2241730, overlap 2241734 GAATCGGATATACGC GCCGTCCCGG GTAC CCGGGACGGA TTCTGTGCGTATGCT TERM 767 2241734 - 2241755 + G 78 -17.3 -2.71912 | opp_overlap 2241730, overlap 2241733 AATCGGATATACGCG CCGTCCCGG GTAC CCGGGACGG ATTCTGTGCGTATGC RHA1_ro02132 2241032 - 2241868 + | short chain dehydrogenase RHA1_ro02133 2241865 - 2242398 + | hypothetical protein RHA1_ro02134 2242432 - 2243871 + | short-chain fatty acid MFS superfamily protein RHA1_ro02135 2243963 - 2247613 + | urea carboxylase RHA1_ro02136 2247613 - 2249358 + | amidase RHA1_ro02137 2250212 - 2249355 - | nucleoside-diphosphate-sugar epimerase RHA1_ro02138 2250337 - 2250747 + | transcriptional regulator TERM 768 2250742 - 2250723 - T 74 -11.4 -3.60505 | opp_overlap 2250722 2250728, overlap 2250721 2250724 AGCACAGGAGAAATA CGACGCCG GACG CGGCGTCA GCTGAGTTCGTCGAG RHA1_ro02139 2251183 - 2250740 - | hypothetical protein TERM 769 2251287 - 2251261 - R 100 -20.2 -4.61873 | opp_overlap 2251255 GGTGAGAAACGAAAA GAGCCCGCACAG AGA CTGTGCGGGCCC TCTCGGTGTTCGGGT dldH1 2252702 - 2251302 - | dihydrolipoamide dehydrogenase TERM 770 2253167 - 2253202 + G 75 -4.6 -4.58466 | gap 1, overlap 2253175 ACTGGGTGTGGGCCG GGGCCAGCGTGCTGC GACCCGA GCAGT-CGCGCGCCC TTTTGTCGTTCTCGC RHA1_ro02141 2252758 - 2254848 + | prolyl oligopeptidase RHA1_ro02142 2255606 - 2254857 - | hypothetical protein TERM 771 2255748 - 2255703 - R 100 -27.1 -2.62396 | gap 1, opp_overlap 2255708, overlap 2255705 CACTTCGTCAGACTA GACGGCTCGACCCCCGCAGATC CGG GATCTGCGGGGGTCGAGTC-TC ATCCGAGACCGGTGA TERM 772 2255747 - 2255705 - R 100 -26.4 -2.85351 | opp_overlap 2255708, overlap 2255703 CTTCGTCAGACTAGA CGGCTCGACCCCCGCAGATC CGG GATCTGCGGGGGTCGAGTCT CATCCGAGACCGGTG TERM 773 2255708 - 2255744 + r 100 -31.1 -2.78384 | opp_overlap 2255705 2255703 CGTCAGACTAGACGG CTCGACCCCCGCAGATC CGG GATCTGCGGGGGTCGAG TCTCATCCGAGACCG RHA1_ro02143 2256807 - 2255764 - | antigen 85 protein precursor TERM 774 2256896 - 2256849 - H 100 -29.4 -3.04144 | opp_overlap 2256856 GCCCGACTCCGAAGA GGCGAGAGCTGGAGCCCACATG ATGT CATGTGGACTCCAGCTCTCGTC GAGAAGTGGGGCCGA TERM 775 2256856 - 2256889 + H 90 -19.7 -2.78596 | opp_overlap 2256849 TCCGAAGAGGCGAGA GCTGGAGCCCACATG ATGT CATGTGGACTCCAGC TCTCGTCGAGAAGTG RHA1_ro02144 2256868 - 2257119 + | hypothetical protein RHA1_ro02145 2257588 - 2257794 + | stress-response transcriptional regulator protein PspC TERM 776 2257857 - 2257822 - T 100 -16.3 -4.21194 | gap 1, overlap 2257825 CGGCAGCACCGAAAA GCACTGTGGCCGTGGA AAGAA TCCACGGCCACAG-AC AAGAAAGAGCCCGGG TERM 777 2257855 - 2257825 - T 100 -21.3 -3.11922 | overlap 2257822 CAGCACCGAAAAGCA CTGTGGCCGTGGA AAGAA TCCACGGCCACAG ACAAGAAAGAGCCCG TERM 778 2257899 - 2257860 - T 100 -31 -3.59202 | opp_overlap 2257864, overlap 2257864 CACGGCCACAGACAA GAAAGAGCCCGGGACACC AGAT GGTGTCCCGGGCTCTTTC GGAGCACTTCGTGCC TERM 779 2257864 - 2257895 + T 100 -26 -3.54459 | opp_overlap 2257860 2257864 GCCACAGACAAGAAA GAGCCCGGGACACC AGAT GGTGTCCCGGGCTC TTTCGGAGCACTTCG TERM 780 2257895 - 2257864 - T 100 -26 -4.42974 | opp_overlap 2257864, overlap 2257860 GCCACAGACAAGAAA GAGCCCGGGACACC AGAT GGTGTCCCGGGCTC TTTCGGAGCACTTCG groEL 2259598 - 2257973 - | chaperonin GroEL TERM 781 2258000 - 2258027 + g 70 -12.6 -3.34233 | overlap 2258022 ACCGCCCATGCCGCC GGTCGGGTCGCC CACG GGCGCTCCGGCC TTCTCCGGCTTGTCG TERM 782 2259459 - 2259473 + g 74 -11.4 -3.78934 | CCATCGTTGGTGATC GTGGGG GCG CCCCAC TTCTTCTCGAGCACG TERM 783 2259733 - 2259768 + r 93 -11.2 -4.59773 | gap 1, overlap 2259734 2259736 CCGGTCTCACCGTCC CG-ACCTGGCACTCACG CGT CGTGAGTGCCAAGTGCA TTTTTAGCACTCGGA TERM 784 2259734 - 2259767 + r 84 -14.7 -3.35542 | gap 1, overlap 2259733 2259736 CGGTCTCACCGTCCC G-ACCTGGCACTCACG CGT CGTGAGTGCCAAGTGC ATTTTTAGCACTCGG TERM 785 2259736 - 2259764 + r 87 -17.5 -2.84171 | overlap 2259734 2259733 GTCTCACCGTCCCGA CCTGGCACTCACG CGT CGTGAGTGCCAAG TGCATTTTTAGCACT RHA1_ro02147 2260382 - 2259828 - | hypothetical protein RHA1_ro02148 2261242 - 2260463 - | hydrolase RHA1_ro02149 2262195 - 2261302 - | universal stress protein RHA1_ro02150 2263239 - 2262208 - | alcohol dehydrogenase RHA1_ro02151 2263249 - 2264520 + | hypothetical protein dadA2 2264615 - 2265862 + | D-amino-acid dehydrogenase small subunit TERM 786 2265903 - 2265877 - T 72 -13 -3.14211 | overlap 2265891 AGCGCGGCTCAGGAA CGAGCTGCCCAG AAT CTGCGCAACTCG ACGACCAGTTCGCGC RHA1_ro02153 2266733 - 2265870 - | hydrolase hutH 2268352 - 2266805 - | histidine ammonia-lyase RHA1_ro02155 2268449 - 2268814 + | hypothetical protein RHA1_ro02156 2268828 - 2269283 + | hypothetical protein RHA1_ro02157 2269318 - 2269842 + | hypothetical protein RHA1_ro02158 2269901 - 2270854 + | DNA polymerase III, beta chain psd 2270872 - 2271630 + | phosphatidylserine decarboxylase pssA 2271627 - 2272490 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 787 2274672 - 2274635 - g 100 -19.9 -4.14739 | opp_overlap 2274630 CGAGGCACGCGAAAA GGTGCGCCCCTCACTCG ATCC CGAGCAAGTGGCGCACC TCGAGTCCTATGCGC RHA1_ro02161 2272518 - 2274701 + | ATPase involved in cell division RHA1_ro02162 2275493 - 2274741 - | carboxyvinyl-carboxyphosphonate phosphorylmutase RHA1_ro02163 2275606 - 2276946 + | hypothetical protein RHA1_ro02164 2277395 - 2276943 - | MutT/nudix family protein TERM 788 2277581 - 2277632 + G 70 -8.4 -3.91858 | TTCTGCTCGCCCATG CCGTTGCCGCCGTTCTGGCTCCGC TTGT GGTGCGCAAGTTCGGCCGCAACGG TTTCTACCCTCTCTC RHA1_ro02165 2277556 - 2280390 + | putative monovalent cation/H+ antiporter subunit A RHA1_ro02166 2280387 - 2280956 + | putative monovalent cation/H+ antiporter subunit C RHA1_ro02167 2280953 - 2282575 + | putative monovalent cation/H+ antiporter subunit D RHA1_ro02168 2282572 - 2283144 + | putative monovalent cation/H+ antiporter subunit E RHA1_ro02169 2283141 - 2283401 + | putative monovalent cation/H+ antiporter subunit F RHA1_ro02170 2283398 - 2283736 + | putative monovalent cation/H+ antiporter subunit G RHA1_ro02171 2284988 - 2283705 - | hypothetical protein RHA1_ro02172 2286231 - 2285107 - | carboxylate-amine ligase RHA1_ro02173 2287008 - 2286307 - | superoxide dismutase RHA1_ro02174 2287633 - 2287082 - | glycoprotein RHA1_ro02175 2287996 - 2287658 - | hypothetical protein def 2288175 - 2288765 + | peptide deformylase RHA1_ro02177 2288755 - 2289720 + | acetyltransferase RHA1_ro02178 2289746 - 2290558 + | DNA-(apurinic or apyrimidinic site) lyase RHA1_ro02179 2291202 - 2290525 - | hypothetical protein RHA1_ro02180 2291657 - 2291295 - | hypothetical protein RHA1_ro02181 2292145 - 2291759 - | hypothetical protein thiC 2292377 - 2294023 + | thiamine biosynthesis protein ThiC thiD 2294034 - 2294879 + | phosphomethylpyrimidine kinase RHA1_ro02184 2295768 - 2294914 - | adenylate cyclase RHA1_ro02185 2297233 - 2295821 - | aminopeptidase TERM 789 2297053 - 2297099 + g 74 -11.4 -3.7941 | overlap 2297056 CCTGTGCGACGTAAT CGACGCTGGCGGCGTAGCCGGA GGT TCCGGCCGCGCGGTTGCCGTTG TTGTTCTCGGCGATC TERM 790 2297056 - 2297096 + g 75 -9.5 -4.02817 | overlap 2297053 GTGCGACGTAATCGA CGCTGGCGGCGTAGCCGGA GGT TCCGGCCGCGCGGTTGCCG TTGTTGTTCTCGGCG TERM 791 2297342 - 2297296 - R 100 -22.3 -3.42354 | overlap 2297299 GAGCCTAACGCAGAA GCACCGGTGGGCCGGCGCGAA TGGAT TTCGCACCGGCCCACAGGCTC CCGCCCCACCGTCAC TERM 792 2297339 - 2297299 - R 100 -24.8 -2.86539 | overlap 2297296 CCTAACGCAGAAGCA CCGGTGGGCCGGCGCGAA TGGAT TTCGCACCGGCCCACAGG CTCCCGCCCCACCGT RHA1_ro02186 2298215 - 2297421 - | ABC transporter permease RHA1_ro02187 2299156 - 2298215 - | multidrug ABC transporter membrane-binding protein thiG 2300037 - 2299270 - | thiazole synthase RHA1_ro02189 2300254 - 2300030 - | sulfur transfer protein ThiS RHA1_ro02190 2301354 - 2300257 - | D-amino acid dehydrogenase TERM 793 2301070 - 2301093 + g 70 -12.4 -3.3482 | opp_overlap 2301069 CTGCGACGTGAACAG CTCGACGCCG GCCC CGGCCTCGAG TTCCTTCCCGAATTC thiE 2301424 - 2302158 + | thiamine-phosphate pyrophosphorylase RHA1_ro02192 2302917 - 2302159 - | NTP pyrophosphohydrolase RHA1_ro02193 2303042 - 2304424 + | hypothetical protein RHA1_ro02194 2304421 - 2305401 + | amino acid ABC transporter ATP-binding protein RHA1_ro02195 2305410 - 2307731 + | serine/threonine-protein kinase askA 2308928 - 2307735 - | acetate kinase TERM 794 2308497 - 2308479 - G 83 -14.6 -3.61715 | overlap 2308493 CAGGGTGTGGAAGAA CGCGGTGT CGA ACACCGCG ACGTGCGGGATGTCC pta 2311045 - 2308925 - | phosphate acetyltransferase RHA1_ro02198 2311476 - 2311117 - | hypothetical protein RHA1_ro02199 2311627 - 2311454 - | hypothetical protein RHA1_ro02200 2312253 - 2311906 - | hypothetical protein RHA1_ro02201 2312438 - 2313061 + | chloramphenicol O-acetyltransferase RHA1_ro02202 2313329 - 2313063 - | hypothetical protein RHA1_ro02203 2313583 - 2314497 + | hypothetical protein RHA1_ro02204 2315574 - 2314567 - | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro02205 2315995 - 2315630 - | inner membrane protein RHA1_ro02206 2316064 - 2317023 + | 85 complex protein, A85 antigen family protein RHA1_ro02207 2328519 - 2316979 - | non-ribosomal peptide synthetase TERM 795 2318013 - 2317975 - G 88 -15.2 -3.68222 | GCCCAATTCGAAGAA GTCGTCGTCGGCCCCGAC GCG GTCGATGCCGAGGACGTC GGCGAAGACCTCCGC TERM 796 2319001 - 2318947 - G 72 -15.7 -2.93549 | gap 2, opp_overlap 2318998, overlap 2318944 CAGTTCGAACAATGA CGCGTCGAAGCTCGGCGACGCGAGATG CGA CACC-CGCG-CACCGTGCATGGACGCG AACCGTTCCCGTTCC TERM 797 2321242 - 2321222 - G 73 -16.9 -2.52896 | GGAGCCCGGAATCGA CGCACCGGA GCG TCCGGTGCG GGGAGTGCGGCACGA hbd2 2329366 - 2328506 - | 3-hydroxybutyryl-CoA dehydrogenase RHA1_ro02209 2333793 - 2329363 - | polyketide synthase RHA1_ro02210 2342954 - 2333814 - | non-ribosomal peptide synthetase RHA1_ro02211 2344488 - 2342947 - | non-ribosomal peptide synthetase RHA1_ro02212 2345567 - 2344515 - | modular polyketide synthase enzyme RHA1_ro02213 2346574 - 2345564 - | 3-oxoacyl-[acyl-carrier-protein] synthase RHA1_ro02214 2347668 - 2346571 - | acyl-CoA dehydrogenase RHA1_ro02215 2347964 - 2347665 - | hypothetical protein RHA1_ro02216 2349151 - 2348009 - | alkanal monooxygenase subunit alpha TERM 798 2348319 - 2348372 + g 91 -19.9 -3.33261 | gap 4 GACGCCAGTTCCTTC GCCGT-CG-CGTCGTCCTCCGCC-ACG ACCG CGTCGGCGGAG-ACGACGACGTACGGC TTCTGCAGGTTCGGC RHA1_ro02217 2350062 - 2349148 - | nitrilotriacetate monoxygenase, component A TERM 799 2349702 - 2349661 - G 70 -12.9 -3.28712 | gap 1, overlap 2349688 GCCCCGGTGGTAGAA CGCGCCTGCGGTGGGATCCG AGA CGAATCGCCCCGC-GCCGCG GTCGATGGTCACGAC RHA1_ro02218 2350862 - 2350065 - | hypothetical protein RHA1_ro02219 2352223 - 2350859 - | nitrilotriacetate monoxygenase, component A RHA1_ro02220 2353364 - 2352228 - | nitrilotriacetate monoxygenase RHA1_ro02221 2355033 - 2353357 - | ABC peptide transporter, ATP-binding component RHA1_ro02222 2355950 - 2355030 - | dipeptide/oligopeptide ABC transporter, permease component TERM 800 2355342 - 2355290 - G 74 -14 -3.2963 | gap 1 ACGAGTTCCGCAGAA CGTGGCGGCG-CAGCACCGTGTGCC AGCG GACACCCGACGCGAACGCCGCCTCG ACGTACAGCGACCGG RHA1_ro02223 2356935 - 2355943 - | ABC peptide transporter, permease component RHA1_ro02224 2358573 - 2356939 - | ABC peptide transporter, permease component TERM 801 2358650 - 2358607 - R 90 -16.1 -3.63515 | gap 1, opp_overlap 2358611 CGTGATCTCGAAGAA GTGC-CGTGCGCGCTGCC CGTCGTATC GGCAGCGCTCACGCGCAC AGGAAGGTGAAGGAC TERM 802 2358689 - 2358665 - R 71 -14.3 -2.75957 | overlap 2358656 2358667 CAGGAAGGTGAAGGA CACCGGATCCG ACG CGGATGCGGTG TGAAGAGCCGGAACC RHA1_ro02225 2360349 - 2358955 - | nitrilotriacetate monoxygenase, component A RHA1_ro02226 2361423 - 2360365 - | nitrilotriacetate monooxygenase, component A RHA1_ro02227 2362481 - 2361420 - | luciferase-like monooxygenase RHA1_ro02228 2363020 - 2362478 - | acetyltransferase RHA1_ro02229 2364024 - 2363032 - | ABC amino acid transporter, permease component RHA1_ro02230 2364823 - 2364041 - | ABC amino acid transporter, ATP-binding component RHA1_ro02231 2365677 - 2364820 - | ABC amino acid transporter, permease component TERM 803 2365902 - 2365930 + H 81 -16.7 -2.62616 | opp_overlap 2365919 CGGGCGCGCGTCAGG CACTCACCGGGCG AAA TGCCCGGTGAGCG TGCTGTGAGACCTCG RHA1_ro02232 2366265 - 2367104 + | hypothetical protein RHA1_ro02233 2367142 - 2367972 + | N-acetylglucosamine metabolism protein RHA1_ro02234 2368533 - 2367994 - | lipoprotein LppV RHA1_ro02235 2370197 - 2368530 - | hypothetical protein RHA1_ro02236 2370291 - 2370611 + | hypothetical protein RHA1_ro02237 2371839 - 2370616 - | O-succinylhomoserine sulfhydrylase RHA1_ro02238 2372258 - 2371836 - | hypothetical protein RHA1_ro02239 2372756 - 2372304 - | hypothetical protein RHA1_ro02240 2372971 - 2374362 + | ferredoxin--NADP(+) reductase TERM 804 2374382 - 2374404 + T 82 -15.6 -3.11634 | opp_overlap 2374387, overlap 2374387 CCGAATCGGTGTGAA GGGAACCTCC TGC GGGGGTTCCC TTCCGTCGTCTCAGG RHA1_ro02241 2374984 - 2374415 - | transcriptional regulator RHA1_ro02242 2375091 - 2375846 + | 2-pyrone-4,6-dicarboxylic acid hydrolase RHA1_ro02243 2376623 - 2375862 - | hypothetical protein RHA1_ro02244 2377204 - 2376722 - | hypothetical protein purT 2378412 - 2377201 - | phosphoribosylglycinamide formyltransferase 2 TERM 805 2378232 - 2378260 + g 73 -12.3 -3.41051 | TGTCGATCGTGTGCG CGCGGTGCGCCAC CTG GTGGCCCGGCGCG TTGTCGTAGCGGTCG RHA1_ro02246 2379317 - 2378451 - | DNA-formamidopyrimidine glycosylase RHA1_ro02247 2380113 - 2379373 - | precorrin 6A synthase thyA 2380201 - 2381001 + | thymidylate synthase RHA1_ro02249 2381001 - 2381507 + | dihydrofolate reductase RHA1_ro02250 2381580 - 2381978 + | hypothetical protein RHA1_ro02251 2382034 - 2382378 + | hypothetical protein RHA1_ro02252 2382503 - 2382769 + | hypothetical protein TERM 806 2383490 - 2383452 - g 82 -18.8 -2.87683 | opp_overlap 2383450 2383454 AGAGCGCTGGAGAGA GTGGTGGCAGGCCCGGCC GGG AGCCGGACCTGCCACCTG AGTTCTCGAAACGGT TERM 807 2383454 - 2383488 + G 86 -22.9 -2.59431 | opp_overlap 2383452, overlap 2383450 AGCGCTGGAGAGAGT GGTGGCAGGCCCGGC CGGGA GCCGGACCTGCCACC TGAGTTCTCGAAACG RHA1_ro02253 2382766 - 2383491 + | hypothetical protein RHA1_ro02254 2384128 - 2383505 - | hypothetical protein TERM 808 2384453 - 2384468 + G 71 -11.8 -3.62032 | overlap 2384455 GCGCTCGGCGTCCAC GCCCCC GACG GGGGGC TTTCGGAGTTCGTCT RHA1_ro02255 2384246 - 2385892 + | sensor kinase, two-component system RHA1_ro02256 2386536 - 2385901 - | response regulator, two-component system RHA1_ro02257 2386709 - 2387572 + | hypothetical protein TERM 809 2388424 - 2388444 + G 73 -10.4 -3.86015 | overlap 2388425 CCGGACGGCGAACGC TGCCGCGA CGAAC TCGCGGCG TTTCTGCAGAACCTG RHA1_ro02258 2387596 - 2388546 + | acyl-[acyl-carrier-protein]desaturase RHA1_ro02259 2388710 - 2388543 - | hypothetical protein RHA1_ro02260 2388788 - 2389117 + | hypothetical protein RHA1_ro02261 2390017 - 2389127 - | universal stress protein TERM 810 2389972 - 2389929 - G 72 -14.5 -2.91383 | AGCGGGAGCGACAGA GCGGCGGCGGCGCGC-GCGGC CCAC GCCACTGCG-GCCGAGGCCGC CTCGGATCCGTCCAC RHA1_ro02262 2391106 - 2390066 - | oxidoreductase RHA1_ro02263 2392063 - 2391179 - | universal stress protein RHA1_ro02264 2392313 - 2392789 + | transcriptional regulator RHA1_ro02265 2392791 - 2393972 + | nitric oxide dioxygenase RHA1_ro02266 2395499 - 2393991 - | hypothetical protein RHA1_ro02267 2395618 - 2395878 + | hypothetical protein RHA1_ro02268 2396671 - 2395883 - | lipoprotein RHA1_ro02269 2398263 - 2396791 - | amino acid APC transporter RHA1_ro02270 2398440 - 2398697 + | hypothetical protein RHA1_ro02271 2399468 - 2398698 - | carboxymethylenebutenolidase RHA1_ro02273 2401176 - 2400379 - | amidohydrolase RHA1_ro02274 2401849 - 2401316 - | ribonuclease H TERM 811 2401439 - 2401397 - G 80 -18.2 -2.91264 | opp_overlap 2401424, overlap 2401399 GGGGGCAGGGATAGA GACCGGCGCCGGCGCGAGCG CAC CGGACGCGACGGCGCGGGCC GCCTCGCCGGCGAGG TERM 812 2401437 - 2401399 - G 82 -17.2 -3.0094 | opp_overlap 2401424, overlap 2401397 GGGCAGGGATAGAGA CCGGCGCCGGCGCGAGCG CAC CGGACGCGACGGCGCGGG CCGCCTCGCCGGCGA RHA1_ro02275 2401922 - 2402848 + | hypothetical protein RHA1_ro02276 2402963 - 2403673 + | cobalamin biosynthesis protein CbiM TERM 813 2403716 - 2403748 + G 70 -14.8 -2.80816 | overlap 2403719 GATTCCTCCTCGGGT TCGCGCTGGTGGCG TTGCT CGTCGCCGGCGCGG TCTCGTACCTCGCCA RHA1_ro02277 2403670 - 2404032 + | hypothetical protein RHA1_ro02278 2404035 - 2404799 + | cobalt ABC transporter permease RHA1_ro02279 2404796 - 2405590 + | ABC cobalt transporter, ATP binding-component RHA1_ro02280 2405641 - 2406711 + | S-adenosylmethionine-dependent methyltransferase RHA1_ro02281 2406894 - 2407496 + | hypothetical protein RHA1_ro02282 2407688 - 2408116 + | hypothetical protein TERM 814 2408169 - 2408122 - T 100 -20.6 -3.06501 | gap 1, overlap 2408098 2408124 CACACCCTGAGCGAA GAGCGAGCTGCAGCCCCGGCC TCACTCG GGCCGGGGCTGCGGCGCG-TC GTCAGCCGACGACGC TERM 815 2408168 - 2408124 - T 100 -19.9 -3.08996 | overlap 2408098 2408122 CACCCTGAGCGAAGA GCGAGCTGCAGCCCCGGCC TCACTCG GGCCGGGGCTGCGGCGCGT CGTCAGCCGACGACG RHA1_ro02283 2409787 - 2408171 - | formyl-CoA transferase RHA1_ro02284 2409910 - 2411478 + | long-chain-fatty-acid--CoA ligase RHA1_ro02285 2411475 - 2412518 + | hypothetical protein RHA1_ro02286 2412531 - 2413292 + | enoyl-CoA hydratase RHA1_ro02287 2413340 - 2414218 + | LysR family transcriptional regulator RHA1_ro02288 2414231 - 2415109 + | LysR family transcriptional regulator RHA1_ro02289 2415251 - 2416078 + | enoyl-CoA hydratase RHA1_ro02290 2416703 - 2416044 - | hypothetical protein RHA1_ro02291 2417049 - 2416696 - | hypothetical protein TERM 816 2417103 - 2417049 - R 100 -25.8 -2.62263 | overlap 2417093 ACTCGGCCGATACCA TCTGCGCTCCCTTCTTCCCCCCACCA GGA CGGTAGGGGGAAGAAGGGAGCGCCTC ACAGAGTTGCTTCCA RHA1_ro02292 2418786 - 2417137 - | long-chain-fatty-acid--CoA ligase RHA1_ro02293 2419568 - 2418804 - | 3-hydroxyacyl-CoA dehydrogenase RHA1_ro02294 2420736 - 2419603 - | thiolase TERM 817 2420711 - 2420681 - G 72 -13.3 -3.1247 | ATTCCGGACAGGGAA CCGCCACGC-CGCCC GAT GGGCGTGCG-GACGG CGTCGACGATCACTG RHA1_ro02295 2422150 - 2420822 - | anion/cation symporter RHA1_ro02296 2422171 - 2422464 + | hypothetical protein RHA1_ro02297 2422482 - 2423639 + | acyl CoA dehydrogenase RHA1_ro02298 2423689 - 2424453 + | trans-aconitate 2-methyltransferase RHA1_ro02299 2425421 - 2424480 - | immunogenic protein RHA1_ro02300 2426833 - 2425418 - | sensory receptor RHA1_ro02301 2427494 - 2426835 - | response regulator, two-component system RHA1_ro02302 2428877 - 2427510 - | alpha-ketoglutarate transporter TERM 818 2429036 - 2428985 - R 80 -15.3 -3.08679 | opp_overlap 2428985 CTCCCTTAGGGAAGA GCCCCCGTGAGTACTTGTCAACC TCGGGC GGTTAACAAGTACTCACGGCTGG GGTGTCCTCGCCGAG RHA1_ro02303 2430170 - 2429016 - | transferase TERM 819 2429210 - 2429241 + g 87 -18 -3.29144 | CGGCGATGTCGTTGA GCGGACCGCACGGG ACAC CCTGTGCGGTCAGC TTCTCGAACCACTCG RHA1_ro02304 2431339 - 2430167 - | glutaryl-CoA dehydrogenase TERM 820 2431769 - 2431807 + G 73 -16.7 -2.62184 | opp_overlap 2431781 CGACGATGTTCCAGG GCATCGAGGAGACGGCC ACGCA GGCCGGCTACTCGGTGC TGCTGTCGAGCCCAC TERM 821 2432395 - 2432432 + G 70 -14.8 -2.68612 | gap 1, overlap 2432393 CCGCTGACGACCGTC CGGTCACCCG-CGCGCC TGATC GGCGCGACGGGTGTGCG TCATCTCCTGTCGAT RHA1_ro02305 2431486 - 2432520 + | LacI family transcription regulator RHA1_ro02306 2434044 - 2432521 - | acyl-CoA synthetase RHA1_ro02307 2434699 - 2434091 - | hypothetical protein RHA1_ro02308 2435644 - 2434862 - | enoyl-CoA hydratase RHA1_ro02309 2436815 - 2435637 - | fumarylacetoacetase RHA1_ro02310 2437669 - 2436812 - | hypothetical protein hmgA 2438865 - 2437666 - | homogentisate 1,2-dioxygenase RHA1_ro02312 2439517 - 2438963 - | MarR family transcriptional regulator RHA1_ro02313 2441222 - 2439651 - | spermidine synthase RHA1_ro02314 2441697 - 2441227 - | hypothetical protein RHA1_ro02315 2442139 - 2441726 - | hypothetical protein RHA1_ro02316 2442639 - 2442136 - | hypothetical protein RHA1_ro02317 2443232 - 2442636 - | hypothetical protein RHA1_ro02318 2443456 - 2444103 + | isochorismatase RHA1_ro02319 2444275 - 2451375 + | non-ribosomal peptide synthetase RHA1_ro02320 2451372 - 2452436 + | ABC Fe(3+) transporter, substrate binding component TERM 822 2452458 - 2452496 + T 100 -25.5 -2.64616 | gap 1 CCTGAGCGCGTCACT GTGCCGCTGCCGA-GAGG TCGT CCTCCTCGGCAGCGGCAC TGCTGTAGGTGCGCA RHA1_ro02321 2453688 - 2452453 - | enterobactin exporter EntS RHA1_ro02322 2453870 - 2454112 + | isochorismatase TERM 823 2455369 - 2455415 + G 73 -13.1 -3.41051 | gap 2, overlap 2455412 GTTCTTCGGCGCAGC GGGCGACGCAGGGCTCATCCACG CGG TGTGGATGA-CCCT-CGCCGGCC TTCTCATCGGCCTCG RHA1_ro02323 2454188 - 2455531 + | hypothetical protein RHA1_ro02324 2455742 - 2455533 - | hypothetical protein RHA1_ro02325 2455859 - 2457400 + | DNA-directed DNA polymerase RHA1_ro02326 2457484 - 2459706 + | hypothetical protein RHA1_ro02327 2460554 - 2459703 - | DNA-3-methyladenine glycosylase II RHA1_ro02328 2461207 - 2460551 - | alkylated DNA repair protein RHA1_ro02329 2461923 - 2461213 - | hypothetical protein RHA1_ro02330 2462522 - 2461920 - | methylated-DNA--[protein]-cysteine S-methyltransferase TERM 824 2462037 - 2462072 + g 74 -12.4 -3.57792 | CACGACGGGGAGCGG GTTGAGCGCGCAGGCG GTTC CGACCGCGCGCACAGC TTTCGGACTGCCTGC TERM 825 2462435 - 2462462 + g 75 -10.4 -3.96148 | opp_overlap 2462425 GGAGACCTGCCTCGG CGGCGAGGGCGG CGAG CCGCTCACGCAG TTTCTGCTCGACCGC RHA1_ro02331 2463010 - 2462519 - | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro02332 2463509 - 2463015 - | methylated-DNA--[protein]-cysteine S-methyltransferase RHA1_ro02333 2463604 - 2464164 + | hypothetical protein RHA1_ro02334 2464889 - 2464152 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02335 2465911 - 2464886 - | phosphotransferase RHA1_ro02336 2467119 - 2465908 - | acyl-CoA dehydrogenase RHA1_ro02337 2467839 - 2467219 - | transcriptional regulator TERM 826 2468312 - 2468289 - g 73 -10.2 -3.86015 | opp_overlap 2468297, overlap 2468261 2468260 GACTTCGCGTACAAA CTCCCCGGCG GTCT CGCCGGCAAG GCCCTCGGCCTCATC RHA1_ro02338 2467959 - 2468417 + | hypothetical protein RHA1_ro02339 2469403 - 2468414 - | NADPH:quinone reductase RHA1_ro02340 2470165 - 2469407 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02341 2471403 - 2470162 - | acyl-CoA dehydrogenase RHA1_ro02342 2472289 - 2471426 - | oxidoreductase TERM 827 2472290 - 2472311 + r 86 -13.1 -3.91911 | opp_overlap 2472289 2472286 TTCCACAGAAATCAC CTGAATCCG GTGT CGGATTCAG TTTCGTTGACCTGGG RHA1_ro02343 2473053 - 2472358 - | TetR family transcriptional regulator RHA1_ro02344 2473859 - 2473098 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02345 2475045 - 2473900 - | long-chain-acyl-CoA dehydrogenase TERM 828 2475097 - 2475110 + H 70 -5.3 -4.386 | overlap 2475081 2475078 2475104 ACGCTTTCCAGCATG TAAGC GTGT GCTTA TTTTCTAAGCGCTTG RHA1_ro02346 2475151 - 2475786 + | transcriptional regulator RHA1_ro02347 2476890 - 2478611 + | hypothetical protein RHA1_ro02348 2478676 - 2479050 + | hypothetical protein RHA1_ro02349 2479047 - 2479628 + | hypothetical protein RHA1_ro02350 2479631 - 2480965 + | hypothetical protein TERM 829 2481531 - 2481547 + G 74 -13.7 -3.36327 | CCGGGGTGCTCGCAG CGGGCTC GAC GAGCCCG TTCTGGGTGAACTGA RHA1_ro02351 2480962 - 2481711 + | hypothetical protein RHA1_ro02352 2481728 - 2482201 + | hypothetical protein RHA1_ro02353 2482201 - 2482839 + | endopeptidase La TERM 830 2482985 - 2483014 + F 100 -19.4 -4.99435 | opp_overlap 2482962 2482985 CGCTACCAGTGGAAA CGGCTCCGGAGA TTCAAT TCTCCGGAGCCG TTTTTCGTTGTTCCA TERM 831 2483014 - 2482985 - f 100 -19.4 -3.62096 | opp_overlap 2482985, overlap 2482962 CGCTACCAGTGGAAA CGGCTCCGGAGA TTCAAT TCTCCGGAGCCG TTTTTCGTTGTTCCA RHA1_ro02355 2483081 - 2484304 + | cytochrome P450 CYP125 RHA1_ro02356 2484408 - 2485544 + | dehydrogenase RHA1_ro02357 2485580 - 2486419 + | lysophospholipase RHA1_ro02358 2486471 - 2487274 + | hypothetical protein RHA1_ro02359 2487659 - 2487279 - | MarR family transcriptional regulator RHA1_ro02360 2487724 - 2489220 + | multidrug ABC transporter TERM 832 2489223 - 2489272 + T 100 -30.9 -2.71011 | opp_overlap 2489237, overlap 2489237 CAACCCCGCGTGAGG CCCGAACGGCAGAACGGGTGGGC ACAG GCCCACCCGTTCTGCCGTTCACG TCGTTCAGGCCGAGT TERM 833 2489258 - 2489237 - T 93 -17.3 -3.36492 | opp_overlap 2489223 2489237 GCCCGAACGGCAGAA CGGGTGGGC ACAG GCCCACCCG TTCTGCCGTTCACGT TERM 834 2489237 - 2489258 + T 93 -17.3 -3.36671 | opp_overlap 2489237, overlap 2489223 GCCCGAACGGCAGAA CGGGTGGGC ACAG GCCCACCCG TTCTGCCGTTCACGT RHA1_ro02361 2490248 - 2489277 - | lipase TERM 835 2490362 - 2490399 + r 84 -12.7 -3.76492 | GACCCCCCGCCACGG TAAGTCGAAGTCGCCCG TTGC CGAGCGACTTCGACCGA TTTCGTCCGATTGCC RHA1_ro02362 2490972 - 2490421 - | gluconokinase RHA1_ro02363 2492401 - 2491007 - | gluconate permease family protein RHA1_ro02364 2492569 - 2493300 + | GntR family transcriptional regulator TERM 836 2493323 - 2493279 - T 100 -25.2 -2.82519 | opp_overlap 2493288 2493290 2493315, overlap 2493283 2493286 CGAGCAGATGAAGGA CGAAGAAGACACCCGCGAGT GAGGT ACTCGCGGGTGTCTCCTGCG CTGCGCGGTAGGTCT TERM 837 2493319 - 2493283 - T 100 -23.2 -3.2981 | opp_overlap 2493288 2493290 2493315, overlap 2493279 2493286 CAGATGAAGGACGAA GAAGACACCCGCGAGT GAGGT ACTCGCGGGTGTCTCC TGCGCTGCGCGGTAG TERM 838 2493316 - 2493286 - T 100 -21.3 -3.78124 | opp_overlap 2493288 2493290 2493315, overlap 2493283 2493279 ATGAAGGACGAAGAA GACACCCGCGAGT GAGGT ACTCGCGGGTGTC TCCTGCGCTGCGCGG TERM 839 2493288 - 2493314 + T 89 -18.8 -2.79796 | opp_overlap 2493286 2493283 2493279, overlap 2493290 GAAGGACGAAGAAGA CACCCGCGAGTG AGG TACTCGCGGGTG TCTCCTGCGCTGCGC TERM 840 2493290 - 2493312 + T 81 -15.6 -2.94747 | opp_overlap 2493286 2493283 2493279, overlap 2493288 AGGACGAAGAAGACA CCCGCGAGTG AGG TACTCGCGGG TGTCTCCTGCGCTGC RHA1_ro02365 2494789 - 2493338 - | major facilitator superfamily sugar transporter RHA1_ro02366 2496196 - 2495018 - | xylose repressor TERM 841 2495969 - 2496018 + g 95 -25.1 -2.60244 | gap 1, overlap 2495966 2495965 2496016 TCTCACCGCGCGGCC CCGCTGGCCGGGGTGGTCGCCG CCCGGCA CGGCAACCATCCCGGCC-GCGG TCAATTCCTTGACCA RHA1_ro02367 2496852 - 2496226 - | KHG/ KDPG aldolase edd 2498718 - 2496865 - | phosphogluconate dehydratase zwf2 2500193 - 2498715 - | glucose-6-phosphate 1-dehydrogenase TERM 842 2500457 - 2500480 + G 88 -15.2 -3.76224 | CCCTCACCGGCCTCT CCCGCACCGC GGTC GCGGCGCGGG TTTCCTCGCTGCAGG TERM 843 2501108 - 2501075 - g 100 -19.7 -4.34402 | opp_overlap 2501064 2501075 TCGGGCACACGAAAA CCGCAGCGGCACA AGGAGTGG TGTGCCGCTGCGG TGATGTGGGGTGTAT TERM 844 2501075 - 2501108 + G 82 -19.7 -2.64422 | opp_overlap 2501075, overlap 2501064 TCGGGCACACGAAAA CCGCAGCGGCACA AGGAGTGG TGTGCCGCTGCGG TGATGTGGGGTGTAT RHA1_ro02370 2500336 - 2501538 + | xylose repressor catC 2501869 - 2501588 - | muconolactone delta-isomerase catB 2503007 - 2501886 - | muconate cycloisomerase catA1 2503879 - 2503037 - | catechol 1,2-dioxygenase catR 2504087 - 2504857 + | IclR family transcriptional regulator RHA1_ro02375 2505411 - 2504872 - | intradiol ring-cleavage dioxygenase RHA1_ro02376 2505643 - 2506590 + | 4-hydroxybenzoyl-CoA thioesterase RHA1_ro02377 2506642 - 2508126 + | multicopper oxidase RHA1_ro02378 2509075 - 2508137 - | AraC family transcriptional regulator RHA1_ro02379 2509241 - 2509801 + | phenol hydroxylase, reductase component RHA1_ro02380 2509826 - 2511442 + | phenol 2-monoxygenase, oxygenase component TERM 845 2511459 - 2511491 + T 84 -14.3 -3.63627 | gap 1 CGCACAGCCGCGCAA TCCCCGTCAGAAGC GAATCA GCT-CTGACGGGGA TTTGCCGTATCGCCG benR 2512412 - 2511465 - | AraC family transcriptional regulator RHA1_ro02382 2512631 - 2513842 + | cytochrome P450 CYP255 RHA1_ro02383 2513845 - 2514840 + | cytochrome P450, reductase benA 2515024 - 2516400 + | benzoate 1,2-dioxygenase alpha subunit benB 2516415 - 2516924 + | benzoate 1,2-dioxygenase beta subunit benC 2516961 - 2518499 + | benzoate 1,2-dioxygenase reductase subunit benD 2518496 - 2519290 + | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase TERM 846 2519309 - 2519352 + F 95 -12.4 -4.41616 | gap 1, overlap 2519310 CCCACAGATCTCGAC CGCCTCATCGGCGGGGCGCAT TGC AT-CGTCTCGCCGTTGGGGCA TTTCTTTAGCCGAAT TERM 847 2519310 - 2519351 + F 86 -15.9 -3.24488 | gap 1, overlap 2519309 CCACAGATCTCGACC GCCTCATCGGCGGGGCGCAT TGC AT-CGTCTCGCCGTTGGGGC ATTTCTTTAGCCGAA TERM 848 2519504 - 2519524 + G 70 -15.5 -2.73994 | overlap 2519501 CCGTCACGTGGGTCG TCGCGATCG CCA CGATCGCGA TCATCTTCGACGGCT benK 2519437 - 2520789 + | MFS family benzoate membrane transporter RHA1_ro02389 2521832 - 2520765 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta RHA1_ro02390 2523031 - 2521838 - | 2-oxoglutarate synthase alpha subunit RHA1_ro02391 2523895 - 2526597 + | transcriptional regulator RHA1_ro02392 2526701 - 2527537 + | methyltransferase RHA1_ro02393 2527928 - 2527518 - | hypothetical protein RHA1_ro02394 2527998 - 2529704 + | hypothetical protein RHA1_ro02395 2530330 - 2529713 - | hypothetical protein gpsA 2530488 - 2531495 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 849 2531587 - 2531556 - Tf 80 -8.7 -4.386 | gap 1 CAATCTCCTAGAAAA CTGGGGCAGACTCC TGAAT GGAGGC-ACCCCAG CAAGCAGCGTCGTGC TERM 850 2531985 - 2531931 - gT 70 -8.5 -3.86015 | gap 1, overlap 2531932 GACTTCCGGGACAAA CCGGACCCGGAGGCGTCGGCGCAC GCGTGGAT GCGCACCGAGACCGCC-GATCCGA TCGACATCCAACGCG TERM 851 2531997 - 2532017 + GT 72 -11.1 -3.46659 | opp_overlap 2531997 CCGATCGACATCCAA CGCGACCGT CTG ACGGTCTCG TTCCTTCTCCATGTC TERM 852 2538239 - 2538257 + GT 70 -8.8 -3.86346 | GACCCTCCATGTCGT GCCGTCGA TGC TCGACGCC TTTCTGGAGCAGTGC TERM 853 2541362 - 2541339 - gT 71 -12.4 -3.21416 | opp_overlap 2541347 CAGGCCGACGACCAA CTCACGGACC TGCT GGCCCGCGAG CGGGTCAGCCACGTG RHA1_ro02398 2546993 - 2546277 - | hypothetical protein RHA1_ro02397 2531631 - 2546342 + | non-ribosomal peptide synthetase acnA1 2548977 - 2547022 - | aconitate hydratase RHA1_ro02400 2550337 - 2549108 - | hypothetical protein RHA1_ro02401 2550465 - 2551052 + | RNA polymerase sigma factor SigD TERM 854 2552065 - 2552081 + G 72 -13.7 -3.24232 | opp_overlap 2552032, overlap 2552062 2552060 CGCCGCAGTGGACAC CGCCGAC CCG GTCGGCG TGTATTTCGGCACGC RHA1_ro02402 2551106 - 2552203 + | hypothetical protein RHA1_ro02403 2552200 - 2552490 + | molybdopterin biosynthesis protein RHA1_ro02404 2553195 - 2552497 - | hypothetical protein RHA1_ro02405 2553238 - 2556735 + | protein kinase/ transcriptional regulator RHA1_ro02406 2557168 - 2556743 - | hypothetical protein TERM 855 2556983 - 2557004 + g 70 -12.3 -3.28712 | gap 1 CATGGTGAATCGCCC GGC-CGCCTC GAT GAGGCGCGCC TTCTCCGAACCGGCG RHA1_ro02407 2557322 - 2558374 + | hypothetical protein RHA1_ro02408 2558371 - 2559177 + | bacteriocin protein RHA1_ro02409 2560527 - 2559193 - | hypothetical protein RHA1_ro02410 2560886 - 2560524 - | hypothetical protein RHA1_ro02411 2561081 - 2560887 - | hypothetical protein RHA1_ro02412 2562982 - 2561078 - | hypothetical protein RHA1_ro02413 2563192 - 2563704 + | hypothetical protein RHA1_ro02414 2564146 - 2563715 - | lyase RHA1_ro02415 2564608 - 2564156 - | transcriptional regulator RHA1_ro02416 2565797 - 2564628 - | alkanesulfonate monooxygenase TERM 856 2566922 - 2566937 + G 81 -7.5 -4.56133 | overlap 2566906 CGGGGCCTACGGGCT CGCGG TCTTCC CCGCG TTTTCCTTGTTCGGC RHA1_ro02417 2565933 - 2567258 + | major facilitator transporter TERM 857 2567465 - 2567429 - g 74 -10.8 -3.72576 | gap 1, opp_overlap 2567437, overlap 2567411 2567444 CGCCGGGTGACGAAA CGGCG-CGGCCAGACAC GCAG GCGTCTGCTCGACGCCG CGGTCGAGGTGTTCG RHA1_ro02418 2567366 - 2568073 + | transcriptional regulator RHA1_ro02419 2568070 - 2569725 + | putative FAD-binding dehydrogenase RHA1_ro02420 2570884 - 2569769 - | alkanesulfonate monooxygenase RHA1_ro02421 2571011 - 2572222 + | dibenzothiophene desulfurization enzyme RHA1_ro02422 2573755 - 2572283 - | hypothetical protein RHA1_ro02423 2575862 - 2574513 - | aromatic ring hydroxylase TERM 858 2574768 - 2574710 - G 82 -20.4 -2.57344 | gap 1, opp_overlap 2574752, overlap 2574709 CATTCGTTCGACAAC GTGGTCGCCCGTGCGCGGTTAACGAGT CCCTGC ACTCGTCAACCGCGCACGGGCGGGCG- GAGCCGCCGAACGTC RHA1_ro02424 2577820 - 2576246 - | major facilitator superfamily multidrug resistance protein TERM 859 2577451 - 2577422 - GH 74 -14.9 -2.56271 | overlap 2577400 2577421 2577419 GCCGCACGAGAAGAT GGCGGCGCCACCG AGAC CGGCGACGCCGCG GGCGACGTCGAGGAC RHA1_ro02425 2577819 - 2578268 + | ArsR family transcriptional regulator RHA1_ro02427 2580283 - 2579207 - | nodulin protein RHA1_ro02426 2578349 - 2579284 + | hypothetical protein RHA1_ro02428 2581019 - 2580351 - | hypothetical protein RHA1_ro02429 2582074 - 2581040 - | hypothetical protein RHA1_ro02430 2582088 - 2582756 + | TetR family transcriptional regulator RHA1_ro02431 2582857 - 2583159 + | hypothetical protein RHA1_ro02432 2584578 - 2583166 - | hypothetical protein RHA1_ro02433 2584645 - 2585169 + | MarR family transcriptional regulator RHA1_ro02434 2586239 - 2585181 - | hypothetical protein RHA1_ro02435 2586328 - 2586645 + | ArsR family transcriptional regulator RHA1_ro02436 2587124 - 2586651 - | hypothetical protein RHA1_ro02437 2588002 - 2587187 - | hypothetical protein TERM 860 2587757 - 2587727 - G 71 -11 -3.65046 | opp_overlap 2587727 2587724 CCCGGATGCGAAGAA GTTCGCCAGCGCCG TCT CGGCGCCGACCAGC CTCTTCATGTGCGTG RHA1_ro02438 2588086 - 2588406 + | hypothetical protein TERM 861 2588493 - 2588546 + F 75 -3.1 -4.72486 | gap 1 AGCCATGTCAACTGA CCAGGCCGACTCGACGTCGGTG AACCCGTTCAC CACCGA-GTTATGGTGGCCTGG TTTTTCGCGTTTCTC RHA1_ro02439 2588665 - 2589519 + | hypothetical protein RHA1_ro02440 2589637 - 2591043 + | ubiquinone biosynthesis protein RHA1_ro02441 2592630 - 2591065 - | tellurium resistance protein RHA1_ro02442 2593904 - 2592639 - | stress related protein TERM 862 2593990 - 2593974 - R 71 -4.3 -4.49337 | overlap 2593976 CTACAACCTACAAAA GAGAGCC GAC GGCCGTC GTCCCCGCACCCCGC RHA1_ro02443 2594844 - 2593966 - | hypothetical protein RHA1_ro02444 2595950 - 2594841 - | hypothetical protein RHA1_ro02445 2597230 - 2595947 - | hypothetical protein TERM 863 2597015 - 2596993 - G 79 -15.6 -3.28924 | overlap 2597007 CATCCGGTCCGAGAA CCTCGGCGAC CAG ATCGCCGAGG CGGTCGCCTGCGCCG RHA1_ro02446 2598429 - 2597227 - | citrate lyase beta subunit RHA1_ro02447 2599758 - 2598442 - | hypothetical protein TERM 864 2599961 - 2599998 + G 76 -13.5 -3.46509 | gap 1, opp_overlap 2599980, overlap 2599956 ACGCCAGCGCCATCG GTGCGGGTGCCGACAAGA AGG TCGTGTCGG-ACCAGCAC TTCGTGTTCTTCAAC RHA1_ro02448 2599822 - 2600397 + | tellerium resistance protein TERM 865 2600414 - 2600461 + F 100 -29.4 -3.23216 | gap 1, overlap 2600417 AGTCGTTTCGTTCTC CAGCCGGGGGAGGGTTTCACGGC CCT GACGTGAAACCCTCCCCCGG-TG TTCGTCCTCCTGCAG TERM 866 2600417 - 2600459 + F 100 -32.2 -3.18023 | overlap 2600414 CGTTTCGTTCTCCAG CCGGGGGAGGGTTTCACGGC CCT GACGTGAAACCCTCCCCCGG TGTTCGTCCTCCTGC RHA1_ro02449 2600489 - 2601658 + | integral membrane protein RHA1_ro02450 2601739 - 2602362 + | hypothetical protein RHA1_ro02451 2602368 - 2603069 + | hypothetical protein RHA1_ro02452 2603066 - 2603821 + | hypothetical protein RHA1_ro02453 2603932 - 2604165 + | hypothetical protein TERM 867 2604186 - 2604230 + T 100 -26.6 -2.98823 | overlap 2604190 GTTCCCCTCGCAGGG CGAAGGTGCCCTTCGACGCT CCCAC GGCGCCGAAGGGCACCTTCG TATGTCTACCCGCGA TERM 868 2604190 - 2604226 + T 100 -20.2 -3.35197 | overlap 2604186 CCCTCGCAGGGCGAA GGTGCCCTTCGACGCT CCCAC GGCGCCGAAGGGCACC TTCGTATGTCTACCC RHA1_ro02454 2604731 - 2604249 - | hypothetical protein TERM 869 2604689 - 2604719 + g 78 -18.2 -2.79183 | GTACCACGATTCCCT CCGTGGCAGGCGGC GGT GCCGCCGGCCACCG TCTCCTGCGCATGAC RHA1_ro02455 2605234 - 2604785 - | hypothetical protein RHA1_ro02456 2605451 - 2606791 + | potassium uptake channel RHA1_ro02457 2607199 - 2606795 - | hypothetical protein RHA1_ro02458 2607995 - 2607246 - | IclR family transcriptional regulator RHA1_ro02459 2609005 - 2607992 - | carbohydrate kinase TERM 870 2609171 - 2609134 - H 77 -5 -4.66609 | gap 1, overlap 2609139 2609143 2609154 TAGGTGACTCAAAAA CGCAAT-CAACGTTGCA TAGAG TGCAACGTTGCACTTCA CGGCACTCCCCCGAT RHA1_ro02460 2609226 - 2610548 + | D-amino acid deaminase RHA1_ro02461 2610571 - 2611935 + | N-acyl-D-amino-acid deacylase RHA1_ro02462 2611985 - 2613244 + | transposase RHA1_ro02463 2613311 - 2613616 + | N-acyl-D-amino-acid deacylase RHA1_ro02464 2613613 - 2614242 + | 2-dehydro-3-deoxy-phosphogluconate aldolase RHA1_ro02465 2614285 - 2615676 + | gluconate permease family protein RHA1_ro02466 2616524 - 2615673 - | spermidine synthase TERM 871 2616896 - 2616869 - g 73 -12 -3.40403 | gap 1 GTTGCTCGACCAGAA GTCGGCGTGGGCG GAG CGC-CACCCCGAC CATCCCGCCGCCACC RHA1_ro02467 2616645 - 2616974 + | hypothetical protein RHA1_ro02468 2618093 - 2617014 - | glucose dehydrogenase RHA1_ro02469 2618092 - 2618424 + | hypothetical protein nat 2618456 - 2619280 + | arylamine N-acetyltransferase RHA1_ro02471 2619326 - 2620105 + | IclR family transcriptional regulator RHA1_ro02472 2620229 - 2620110 - | hypothetical protein RHA1_ro02473 2621624 - 2620266 - | shikimate transporter TERM 872 2620907 - 2620917 + g 70 -8.2 -3.84406 | GCAGTGCCTCGACGA GCGG AAT CCGC TTCTTGTCCTGGGCG RHA1_ro02474 2621882 - 2623297 + | gamma-aminobutyrate APC transporter TERM 873 2623391 - 2623375 - f 74 -10.8 -3.72576 | GTCCCGCCGAGGAAA GGCCGG ACCCA CCGGCC CGAGGAAGGACCGAA RHA1_ro02475 2623411 - 2624388 + | glucose-fructose oxidoreductase RHA1_ro02476 2625934 - 2624399 - | phospholipase C tauD 2626857 - 2625991 - | alpha-ketoglutarate-dependent taurine dioxygenase RHA1_ro02478 2627889 - 2627128 - | short-chain dehydrogenase RHA1_ro02479 2628371 - 2627889 - | hypothetical protein RHA1_ro02480 2629306 - 2628476 - | carveol dehydrogenase RHA1_ro02481 2630109 - 2629309 - | carveol dehydrogenase RHA1_ro02482 2630377 - 2630123 - | hypothetical protein RHA1_ro02483 2632045 - 2630378 - | 3-ketosteroid-delta-1-dehydrogenase TERM 874 2631121 - 2631146 + g 70 -12.5 -3.32844 | overlap 2631120 CCGCGCCGACCTGCT CGCCGGCGACG ATTC CGTCTCCGGTG TTGTCGGGTGAGCCG TERM 875 2632170 - 2632132 - R 88 -13.8 -3.87815 | overlap 2632159 GCGGAGCGGGAGAAA GCGGCGCCGCCGCC GGGCGGGAGAA AGCGGCGCCGCCGC CGGGCGGGAGAAGAG RHA1_ro02484 2632707 - 2632189 - | nitrilotriacetate monooxygenase component B RHA1_ro02485 2632837 - 2633574 + | PadR family transcriptional regulator RHA1_ro02486 2634524 - 2633571 - | sterase / lipase RHA1_ro02487 2635336 - 2634545 - | IclR family transcriptional regulator TERM 876 2635496 - 2635458 - R 100 -18.9 -3.63627 | CCCGTACAGCCCAAA GGCCCGGCGCACGCATC GAGTG GATACGCACACCGGGCC CGGACACCCCTTACA RHA1_ro02488 2636412 - 2635507 - | extradiol dioxygenase, type I RHA1_ro02489 2637631 - 2636450 - | pigment production hydroxylase RHA1_ro02490 2638853 - 2637660 - | dioxygenase Rieske iron-sulfur component RHA1_ro02491 2639047 - 2639553 + | hypothetical protein TERM 877 2639573 - 2639618 + T 100 -25 -2.88544 | gap 2, opp_overlap 2639577, overlap 2639578 GACCTCGTTCTCCCA CGAATTGGTCAGCCGCGCAGGC AATT GCCTGCGCGGCTGACCA-T-CG TCTGTGAAACTACCC TERM 878 2639616 - 2639577 - T 100 -28 -3.14132 | opp_overlap 2639573 2639578 TCGTTCTCCCACGAA TTGGTCAGCCGCGCAGGC AATT GCCTGCGCGGCTGACCAT CGTCTGTGAAACTAC TERM 879 2639578 - 2639615 + T 100 -31.5 -2.69468 | opp_overlap 2639577, overlap 2639573 CGTTCTCCCACGAAT TGGTCAGCCGCGCAGGC AATT GCCTGCGCGGCTGACCA TCGTCTGTGAAACTA RHA1_ro02492 2641289 - 2639628 - | cyclohexanone monooxygenase TERM 880 2640309 - 2640354 + g 95 -13.3 -4.25104 | gap 1, overlap 2640283 2640281 GGGGTGATCGTTCGG GATCAGCTTGTCCG-CGACGGC GGG GTCGTCGACGAGCAGGCGGATC TTTTCCTCGGCGAAC RHA1_ro02493 2642182 - 2641406 - | hypothetical protein RHA1_ro02494 2646752 - 2642214 - | non-ribosomal peptide synthetase TERM 881 2643356 - 2643336 - G 71 -11.1 -3.55444 | CGGCGAGTCGGGAAA CACCGTTCG CAA CGAGCGGTG CCGGTGCAGGACGTC RHA1_ro02495 2646952 - 2647935 + | 5,10-methylenetetrahydromethanopterin reductase TERM 882 2647996 - 2647957 - f 100 -20.2 -3.01712 | gap 1, opp_overlap 2647988 2647989 2647990 CGGCCGCCCGGAATA CGCGCACTACCTCTGCGGT TAC ACC-CAGAGGTAGTGCGTG AGGCTGACCTCTCGC RHA1_ro02496 2648045 - 2649049 + | monoxygenase RHA1_ro02497 2650196 - 2649084 - | alcohol dehydrogenase RHA1_ro02498 2651728 - 2650220 - | aldehyde dehydrogenase RHA1_ro02499 2653500 - 2651845 - | transcriptional regulator TERM 883 2651880 - 2651923 + g 71 -11.6 -3.61398 | gap 1, overlap 2651881 CTCGAATCCGGACGT AGAGCGTGCTGCGGCTGATGC CCA GCG-CGGCCGCGGCATGCACC TTGTTGCCGCCGCAC TERM 884 2651881 - 2651922 + g 70 -15.1 -2.76696 | gap 1, overlap 2651880 TCGAATCCGGACGTA GAGCGTGCTGCGGCTGATGC CCA GCG-CGGCCGCGGCATGCAC CTTGTTGCCGCCGCA TERM 885 2653618 - 2653652 + r 81 -13.7 -3.51924 | gap 2, opp_overlap 2653627 AGTGCCTGTGGGCGC GGCGAGCAACTGTCCGG ATT CTGGACAG-TGC-CGCC TTCTCTCAATCGAAC RHA1_ro02500 2654800 - 2653658 - | hypothetical protein RHA1_ro02501 2656209 - 2654893 - | major facilitator transporter RHA1_ro02502 2657450 - 2656206 - | amidohydrolase RHA1_ro02503 2657579 - 2658598 + | AsnC family transcriptional regulator RHA1_ro02505 2659680 - 2659066 - | hypothetical protein RHA1_ro02504 2658640 - 2659179 + | hypothetical protein RHA1_ro02506 2659788 - 2660129 + | suppressor protein DnaK RHA1_ro02507 2660410 - 2660126 - | hypothetical protein RHA1_ro02508 2660769 - 2660987 + | ferredoxin protein TERM 886 2661842 - 2661798 - g 89 -19.4 -3.25823 | gap 1 GGCGTTCGACATCAA CG-GCATCGTCACCGACAACG TGTT CGTCGCCGGTGACGTTGCGCG GCAACCACATCCGCT RHA1_ro02509 2660989 - 2662341 + | cytochrome P450 ferredoxin--NAD(+) reductase RHA1_ro02511 2664858 - 2663464 - | hypothetical protein RHA1_ro02510 2662356 - 2663567 + | cytochrome P450 CYP147 TERM 887 2663873 - 2663845 - GT 75 -13.7 -3.01712 | CGCCGGCGCCGAACA CCCCGGCCGGGTG CAA CCCCCGTCCGAGG CGATCAGAGCGAGCC RHA1_ro02512 2666007 - 2665060 - | AraC family transcriptional regulator pheA2 2666247 - 2666819 + | phenol hydroxylase, reductase component TERM 888 2667423 - 2667383 - g 77 -14.5 -3.21747 | opp_overlap 2667380 2667377 CCACGCGATCATCAA CCCACCCGTCGACCGGCAG CTC CCGCCGGACGAGGTGGGGG ACGTGTTCATGAAGG pheA1 2666841 - 2668457 + | phenol hydroxylase, oxygenase component catA2 2668480 - 2669328 + | catechol 1,2-dioxygenase TERM 889 2669384 - 2669333 - f 100 -20 -2.91264 | opp_overlap 2669333 CCGCGGACTGAGACA CCCACCCTCCCCCGGGCGACGCGA AAGT TCGTGTCGCCCGGGGGATCGACGG TTTGTGGAGGAAACA TERM 890 2669333 - 2669384 + F 100 -22.2 -3.85698 | opp_overlap 2669333 CCGCGGACTGAGACA CCCACCCTCCCCCGGGCGACGCGA AAGT TCGTGTCGCCCGGGGGATCGACGG TTTGTGGAGGAAACA TERM 891 2670133 - 2670172 + G 79 -18.6 -2.53581 | gap 1 GAGCCATGCGCTCAT GCCGG-AAGCGCCCGCACA GGT TGTGCGGGCGCTCACCGAC TGGATTCAGGCTCTC RHA1_ro02516 2669402 - 2670196 + | hydrolase catF 2671436 - 2670201 - | acetyl-CoA acetyltransferase TERM 892 2670981 - 2671013 + g 71 -11.1 -3.64703 | GGTGACGCGGCCGCG GGCGAGCCGGTCGTG GAG CACTGCCGGCGCACC TTTGGCTCCCCAGCG RHA1_ro02518 2673135 - 2671429 - | acyl-CoA synthetase TERM 893 2671512 - 2671532 + g 74 -11.1 -3.76402 | GGATCTTGGCTCCGT TGCCGCCCA CGG TGGTCGGCA TTTCCTCGATCACGT catD 2673980 - 2673132 - | 3-oxoadipate enol-lactonase RHA1_ro02520 2674726 - 2673977 - | hypothetical protein RHA1_ro02521 2675916 - 2674723 - | butyryl-CoA dehydrogenase RHA1_ro02522 2676659 - 2676054 - | TetR family transcriptional regulator RHA1_ro02523 2676863 - 2677342 + | hypothetical protein RHA1_ro02524 2677339 - 2677692 + | hypothetical protein RHA1_ro02525 2677689 - 2679293 + | SSF family Na(+)/solute symporter TERM 894 2679300 - 2679347 + F 100 -22.7 -2.70932 | gap 1 ACGCACTAGGTTTCA CG-CTCGGCCGCTGCCGTCGCC ATCGC GGCGGGGGCAGCGGCCGTGACG TGGTTCCGGCGCGAC RHA1_ro02526 2679435 - 2679905 + | hypothetical protein RHA1_ro02527 2679926 - 2680498 + | TetR family transcriptional regulator RHA1_ro02528 2680534 - 2680857 + | hypothetical protein RHA1_ro02529 2680910 - 2681608 + | hydrolase RHA1_ro02530 2682714 - 2681641 - | hypothetical protein RHA1_ro02531 2682836 - 2683324 + | hypothetical protein RHA1_ro02532 2683354 - 2683914 + | streptomycin 6-kinase, N-terminal RHA1_ro02533 2683911 - 2684138 + | streptomycin 6-kinase, C-terminal alkB 2684447 - 2685679 + | alkane 1-monooxygenase rubA 2685679 - 2685846 + | alkene monooxygenase rubredoxin rubB 2685848 - 2686033 + | alkene monooxygenase rubredoxin RHA1_ro02537 2686030 - 2687304 + | alkene monooxygenase rubredoxin reductase RHA1_ro02538 2687315 - 2687941 + | TetR family transcriptional regulator RHA1_ro02539 2689152 - 2687974 - | 4-hydroxybenzoate 3-monooxygenase RHA1_ro02540 2689981 - 2689244 - | IclR family transcriptional regulator RHA1_ro02541 2692061 - 2689998 - | acyltransferase RHA1_ro02542 2692252 - 2693529 + | aromatic acid transporter TERM 895 2693818 - 2693785 - g 70 -12.4 -3.25823 | GTCCTTCGAGATCAA CGGGCAGCCGTTCA TCGCGC TCAACGGCGGCCCG CAGTTCACGTTCGAC RHA1_ro02543 2693621 - 2694094 + | hypothetical protein RHA1_ro02544 2694091 - 2694513 + | hypothetical protein RHA1_ro02545 2695129 - 2694494 - | ABC metal ion transporter, ATP-binding component TERM 896 2695566 - 2695612 + G 80 -15.9 -3.15861 | gap 2, overlap 2695560 TGCTCTGGCTCGCGG CG-GCGG-CCGCGGTCGCCGGGA TCG TCTCGGTGATCGCGTACCGCCCG TTCGTCGCCCTCGTC RHA1_ro02546 2695148 - 2696002 + | zinc ABC transporter permease RHA1_ro02547 2696016 - 2697290 + | ABC transporter TERM 897 2697451 - 2697427 - g 72 -3.5 -4.57569 | gap 1, overlap 2697428 2697429 TGATGTGGTGAAAAA CGTCGTCGGC GACCAG GCCGACGT-G ATGGTGCTGATGCCG RHA1_ro02548 2697296 - 2698207 + | ABC metal transporter, substrate-binding component RHA1_ro02549 2698283 - 2699437 + | hypothetical protein pcaC 2699873 - 2699454 - | 4-carboxymuconolactone decarboxylase RHA1_ro02551 2700043 - 2700411 + | hypothetical protein RHA1_ro02552 2701744 - 2700392 - | NAD-dependent epimerase RHA1_ro02553 2701804 - 2703285 + | epimerase RHA1_ro02554 2704040 - 2703264 - | lipocalin protein RHA1_ro02555 2704072 - 2704737 + | cell surface protein TERM 898 2704764 - 2704798 + F 100 -27.3 -3.69395 | opp_overlap 2704756 TCACAGATCTCCGCG CCCGGCGGCATCGGT CCCAC ACCGATGCCGCCGGG TTCTTGCGTGCTCCC RHA1_ro02556 2704910 - 2705557 + | hypothetical protein TERM 899 2706003 - 2706046 + G 78 -13.3 -3.55815 | gap 3, opp_overlap 2706018, overlap 2706004 2706006 2706008 2706008 ACCCCGGCCGACGAG GCG-TGCG-CGCAGGAAC-CGC TGG GCGAGTTCCTGCGCCGCAACGG TTTCAGCCGGTATTT TERM 900 2706004 - 2706045 + G 74 -16.8 -2.73007 | gap 3, opp_overlap 2706018, overlap 2706003 2706006 2706008 2706008 CCCCGGCCGACGAGG CG-TGCG-CGCAGGAAC-CGC TGG GCGAGTTCCTGCGCCGCAACG GTTTCAGCCGGTATT TERM 901 2706300 - 2706344 + G 78 -17.2 -2.71144 | opp_overlap 2706298 CGGGTGGAACGCACT CCGGACGGCGGCGCGTG-CGTC GTC GACGGCA-GCGGCGACGTCCGG TACTTCGACGCCATG RHA1_ro02557 2705550 - 2706890 + | amine oxidase RHA1_ro02558 2706887 - 2707627 + | hypothetical protein RHA1_ro02559 2707624 - 2709012 + | cyclopropane-fatty-acyl-phospholipid synthase RHA1_ro02560 2709009 - 2710313 + | cyclopropane-fatty-acyl-phospholipid synthase RHA1_ro02561 2710310 - 2711110 + | hypothetical protein RHA1_ro02562 2711209 - 2711787 + | RNA polymerase sigma factor SigK RHA1_ro02563 2711780 - 2712517 + | hypothetical protein RHA1_ro02564 2714796 - 2712577 - | malate synthase G pyk2 2716367 - 2714895 - | pyruvate kinase TERM 902 2715517 - 2715536 + g 73 -10 -3.85698 | GGCTTCGCATTCTCG CGGGCTAT TTGG ATGGCCCG TTTCTGCGCGAGCGG aceE2 2719433 - 2716386 - | 2-oxoacid dehydrogenase subunit E1 TERM 903 2718859 - 2718837 - G 71 -2.6 -4.56597 | gap 1, overlap 2718838 2718839 CCGCCCCTCCAAAAA GGCGCGGGC GTAGAT GCCCG-GCG AGGCGTGGCCCTGGA RHA1_ro02567 2720174 - 2719446 - | hydantoin racemase RHA1_ro02568 2721761 - 2720187 - | permease for cytosine/purines, uracil, thiamine, allantoin RHA1_ro02569 2722449 - 2723756 + | transposase RHA1_ro02570 2724169 - 2723795 - | allantoinase RHA1_ro02571 2725559 - 2724162 - | malate dehydrogenase (oxaloacetate-decarboxylating) RHA1_ro02572 2726671 - 2725613 - | allantoicase RHA1_ro02573 2727819 - 2726668 - | glycerate kinase RHA1_ro02574 2729633 - 2727828 - | glyoxylate carboligase RHA1_ro02575 2730554 - 2729670 - | 2-hydroxy-3-oxopropionate reductase RHA1_ro02576 2731410 - 2730589 - | hydroxypyruvate isomerase RHA1_ro02577 2731844 - 2731437 - | hypothetical protein RHA1_ro02578 2732631 - 2731849 - | S-methyl-5-thioadenosine phosphorylase dctA1 2734057 - 2732624 - | C4-dicarboxylate transporter RHA1_ro02580 2734268 - 2735038 + | IclR family transcriptional regulator RHA1_ro02581 2736656 - 2735052 - | protein kinase RHA1_ro02582 2737031 - 2737522 + | ATP-dependent Clp protease ATP-binding subunit RHA1_ro02583 2737624 - 2738862 + | LuxR family transcriptional regulator RHA1_ro02584 2739762 - 2738941 - | formate dehydrogenase accessory protein RHA1_ro02585 2742068 - 2739762 - | formate dehydrogenase alpha subunit RHA1_ro02586 2742705 - 2742073 - | hydrolase RHA1_ro02587 2743787 - 2742702 - | mycothiol-dependent formaldehyde dehydrogenase TERM 904 2745225 - 2745182 - g 78 -17.5 -2.78384 | gap 2, opp_overlap 2745179 TGCTGCTGGAGTACA CGACGTCCGCGGCCATCGCCG AGAT CCG-GATGGCCGCGG-CGCCG GGCTCTCTCGGACAC RHA1_ro02588 2744095 - 2745540 + | histidine ammonia-lyase RHA1_ro02589 2745606 - 2746721 + | ABC quaternary amine transporter, ATP-binding component RHA1_ro02590 2746718 - 2747368 + | ABC quaternary amine transporter, permease component RHA1_ro02591 2747365 - 2748120 + | ABC amino acid transporter, permease component RHA1_ro02592 2748132 - 2749040 + | ABC amino acid transporter, substrate binding component RHA1_ro02593 2749520 - 2749041 - | hypothetical protein RHA1_ro02594 2750719 - 2749580 - | lactone hydrolase RHA1_ro02595 2750945 - 2753299 + | sulfatase RHA1_ro02596 2755153 - 2753318 - | ABC transporter ATP-binding protein TERM 905 2754916 - 2754943 + g 86 -13.4 -3.87815 | TGAGGACGGCGGGCA CCCGATTCGACG CCGA CGCCGAGTCGGG TTTGTACACGTCGCC RHA1_ro02597 2755315 - 2755992 + | GntR family transcriptional regulator RHA1_ro02598 2757242 - 2756055 - | serine-type D-Ala-D-Ala carboxypeptidase RHA1_ro02599 2757353 - 2758186 + | short chain dehydrogenase TERM 906 2758277 - 2758314 + F 93 -17.9 -3.5525 | gap 1, opp_overlap 2758273 2758272, overlap 2758278 AGCCACTAAACCCTT GCCATGGTGCCATCGCTG TGC CA-CGATGGCACCATGGA TTTGACACCGTATGT TERM 907 2758278 - 2758313 + F 100 -21.4 -2.72829 | gap 1, opp_overlap 2758273 2758272, overlap 2758277 GCCACTAAACCCTTG CCATGGTGCCATCGCTG TGC CA-CGATGGCACCATGG ATTTGACACCGTATG RHA1_ro02600 2758280 - 2758825 + | hypothetical protein RHA1_ro02601 2758898 - 2759743 + | hypothetical protein RHA1_ro02602 2759774 - 2760730 + | ABC transporter, ATP-binding component RHA1_ro02603 2760727 - 2761560 + | multidrug ABC transporter permease RHA1_ro02604 2761602 - 2762828 + | cytochrome P450 CYP105 RHA1_ro02605 2763621 - 2762803 - | haloalkane dehalogenase RHA1_ro02606 2763699 - 2764610 + | amidohydrolase RHA1_ro02607 2764693 - 2765580 + | hydrolase tynA 2767997 - 2766051 - | tyramine oxidase RHA1_ro02609 2769484 - 2767994 - | amino acid transporter TERM 908 2769066 - 2769111 + g 84 -19.8 -2.91264 | opp_overlap 2769064 ACGTACCAGGGAAGT TCGGGGCCGCCGTGAGCGGT GACGAA ATCGTTGACGGCGGCTCCGA TGTATCCGTACACCG RHA1_ro02610 2771160 - 2769655 - | aldehyde dehydrogenase RHA1_ro02611 2771595 - 2771329 - | hypothetical protein TERM 909 2772859 - 2772897 + GH 72 -11.6 -3.48684 | overlap 2772841 2772839 GGGCGGCGTTCTCGC GCACGTATGTCGCGGGCG CGG CGACCGCCGTCTACGTGC TTCTGATGCTTGTCG RHA1_ro02612 2771583 - 2773037 + | amino acid transporter RHA1_ro02613 2773034 - 2773789 + | IclR family transcriptional regulator RHA1_ro02614 2774652 - 2773792 - | short chain dehydrogenase RHA1_ro02615 2776087 - 2774729 - | dibenzothiophene desulfurization enzyme RHA1_ro02616 2776086 - 2777168 + | secreted hydrolase RHA1_ro02617 2777392 - 2777697 + | WhiB family transcriptional regulator RHA1_ro02618 2778330 - 2777719 - | PadR family transcriptional regulator RHA1_ro02619 2778308 - 2778874 + | peptide deformylase RHA1_ro02620 2779503 - 2779012 - | hypothetical protein TERM 910 2780128 - 2780097 - g 74 -16.6 -2.72344 | gap 1 CCGCAGGCGCAACGA CCCGCTCGC-CGCAC TCA GTGCGCGGGAGCGGG AGGTACTGGCCCTCA RHA1_ro02621 2779651 - 2780307 + | response regulator, two-component system RHA1_ro02622 2780719 - 2780285 - | response regulator, two-component system RHA1_ro02623 2782486 - 2780774 - | sensor kinase, two-component system RHA1_ro02624 2782573 - 2782806 + | hypothetical protein RHA1_ro02625 2783402 - 2782803 - | hypothetical protein RHA1_ro02626 2784084 - 2783422 - | transcriptional regulator RHA1_ro02627 2785316 - 2784174 - | long-chain-acyl-CoA dehydrogenase RHA1_ro02628 2787055 - 2785328 - | o-succinylbenzoate--CoA ligase RHA1_ro02629 2787767 - 2787033 - | 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase RHA1_ro02630 2788633 - 2787797 - | naphthoate synthase RHA1_ro02631 2789866 - 2788715 - | butyryl-CoA dehydrogenase RHA1_ro02632 2790008 - 2790958 + | hypothetical protein RHA1_ro02633 2791091 - 2791702 + | TetR family transcriptional regulator RHA1_ro02634 2792321 - 2791707 - | hypothetical protein RHA1_ro02635 2793269 - 2792325 - | hypothetical protein TERM 911 2793285 - 2793260 - G 72 -14.9 -2.86539 | overlap 2793257 TGCAATTCAGAATGA CTGTTGACATC GCAT GATGTCAACAG TGGAGCGCGGGGGTT TERM 912 2793846 - 2793801 - g 82 -16.9 -3.35679 | gap 1, overlap 2793802 CTGCGGCACTGACAA TCCTGGGTGTCGACGGCG-CAC CTC GCGACGCCGTCAACACCCAGCT GAACGCGATTGCCCT TERM 913 2793845 - 2793802 - g 82 -20.4 -2.61264 | gap 1, overlap 2793801 TGCGGCACTGACAAT CCTGGGTGTCGACGGCG-CAC CTC GCGACGCCGTCAACACCCAGC TGAACGCGATTGCCC TERM 914 2793850 - 2793877 + G 75 -9.8 -4.03234 | overlap 2793851 CAACACCCAGCTGAA CGCGATTGCCCT GTTC GGGGCGATCGCC TTTCTGTACCAGCGC RHA1_ro02636 2793338 - 2793988 + | TetR family transcriptional regulator RHA1_ro02637 2794452 - 2793985 - | hypothetical protein RHA1_ro02639 2795582 - 2795079 - | short chain dehydrogenase RHA1_ro02638 2794624 - 2795172 + | hypothetical protein RHA1_ro02640 2795990 - 2795634 - | hypothetical protein RHA1_ro02641 2796678 - 2796139 - | hypothetical protein RHA1_ro02642 2797429 - 2797181 - | hypothetical protein RHA1_ro02643 2797473 - 2797790 + | hypothetical protein TERM 915 2797826 - 2797852 + F 93 -19.5 -3.15999 | opp_overlap 2797813 CACCTCGGCGTCTCA CCGTCCCCGGA CACAC TCCGGGGACGG TTCCCTGTGTGCACG TERM 916 2797897 - 2797921 + F 78 -15.7 -2.70932 | GACGACGTACCGCAC CCACGGGGCCA AGT TCGCCCCGTGG TGGTTCGGCACCAGC RHA1_ro02644 2798138 - 2798428 + | hypothetical protein TERM 917 2798471 - 2798434 - f 81 -16.3 -2.54193 | CAGCATCTGAAGCCA GGCCATCCCGAGACACC GGTG AGCGCCTCGGGATGGGC GTCTCGGGGTGGCGT RHA1_ro02645 2798466 - 2799068 + | hypothetical protein RHA1_ro02646 2799088 - 2800155 + | transcriptional regulator RHA1_ro02647 2801774 - 2800332 - | aldehyde dehydrogenase TERM 918 2801169 - 2801183 + g 74 -12.8 -3.61715 | opp_overlap 2801167 GATGTTCAGCACACC GCCGGG CAG CCCGGC TTCTTCGGCCGCGTC RHA1_ro02648 2802902 - 2801805 - | aryl-alcohol dehydrogenase TERM 919 2802959 - 2802937 - R 75 -12.1 -3.50853 | overlap 2802945 GGTGCGTAACCAGAA CGTACAGAC TGACC GTCTGTACG GTCAATAGTCGTTGA RHA1_ro02649 2804265 - 2803237 - | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro02650 2805992 - 2804337 - | acyl-CoA synthetase RHA1_ro02651 2806182 - 2807414 + | cytochrome P450 CYP125 RHA1_ro02652 2807411 - 2807605 + | ferredoxin RHA1_ro02653 2807612 - 2808844 + | FAD-dependent oxidoreductase RHA1_ro02654 2808887 - 2810050 + | sterol carrier protein RHA1_ro02655 2810076 - 2810459 + | hypothetical protein RHA1_ro02656 2810554 - 2811255 + | TetR family transcriptional regulator RHA1_ro02657 2811753 - 2811256 - | hypothetical protein RHA1_ro02658 2811902 - 2813455 + | long-chain-fatty-acid--CoA ligase RHA1_ro02659 2813509 - 2813913 + | hypothetical protein RHA1_ro02660 2813945 - 2815471 + | aldehyde dehydrogenase RHA1_ro02661 2815468 - 2816571 + | Zn-binding alcohol dehydrogenase RHA1_ro02662 2816890 - 2817321 + | hypothetical protein TERM 920 2817740 - 2817753 + F 71 -9.5 -3.70863 | GAGGTTCTTCCGCGC CCCCC ATTC GGGGG TTTGGGTGCTATATC RHA1_ro02663 2817821 - 2819095 + | triacylglycerol lipase RHA1_ro02664 2819177 - 2819377 + | hypothetical protein TERM 921 2819384 - 2819416 + T 91 -16.9 -3.58905 | overlap 2819385 GCCTCGTGACTGAGG ATCCCGGGGTACGGC GTC GCCGTGCCCCGGGCC TTGTCTGTCCGGGCT TERM 922 2819385 - 2819415 + T 93 -20.4 -2.75022 | overlap 2819384 CCTCGTGACTGAGGA TCCCGGGGTACGGC GTC GCCGTGCCCCGGGC CTTGTCTGTCCGGGC RHA1_ro02665 2820117 - 2819767 - | hypothetical protein RHA1_ro02666 2820545 - 2820228 - | hypothetical protein RHA1_ro02667 2821375 - 2820602 - | short chain dehydrogenase TERM 923 2820777 - 2820753 - G 71 -11.3 -3.6608 | ATTACCTGAGCGAAA CCGCCAGGGGC GAG GCCCATGGTGG ACTCCCAAACTGGGA RHA1_ro02668 2821941 - 2821642 - | hypothetical protein TERM 924 2821833 - 2821868 + g 73 -7.4 -4.19238 | gap 1, overlap 2821835 GTGCGCCTCGCTCGA ATCTCGGGTGTGGCCGA AAA TCGGCC-CGCCCGCGTG TTTTCGCCTTCCGAA TERM 925 2821835 - 2821866 + g 82 -14.4 -3.69618 | gap 1, overlap 2821833 GCGCCTCGCTCGAAT CTCGGGTGTGGCCGA AAA TCGGCC-CGCCCGCG TGTTTTCGCCTTCCG RHA1_ro02669 2822831 - 2822079 - | enoyl-CoA hydratase RHA1_ro02670 2823712 - 2823272 - | hypothetical protein RHA1_ro02671 2824761 - 2823862 - | hypothetical protein TERM 926 2824130 - 2824160 + g 78 -8.3 -4.25283 | gap 1, overlap 2824133 2824151 CCGAGGGTCACCTCG TTGCGCCAGGACGG AGCC CTGTCCT-GCGCGG TTTTGGTGAAGAACT RHA1_ro02672 2826105 - 2825194 - | metallo-beta-lactamase family protein TERM 927 2826143 - 2826168 + r 77 -13.3 -3.34522 | gap 1, overlap 2826144 GATTGGTCAGTGGCA TCG-GGTGGGCC TCC GGCCCACCGCGG TTAGTTCAACGGTAT TERM 928 2826144 - 2826167 + r 74 -14.6 -2.60392 | gap 1, overlap 2826143 ATTGGTCAGTGGCAT CG-GGTGGGCC TCC GGCCCACCGCG GTTAGTTCAACGGTA RHA1_ro02673 2828323 - 2826296 - | acetoacetyl-CoA synthetase RHA1_ro02674 2829317 - 2828364 - | transcriptional regulator RHA1_ro02675 2829474 - 2831801 + | LuxR family transcriptional regulator TERM 929 2832139 - 2832098 - g 82 -10.7 -4.18018 | TGCGCCGACGCAAAA GCAGCCGGCGCCGCGCCGA TCTA CCAAGGCGAGGCCGGCTAC TCGACGAAACTCGAC RHA1_ro02676 2831798 - 2832187 + | hypothetical protein RHA1_ro02677 2832675 - 2832235 - | hypothetical protein RHA1_ro02678 2832966 - 2833310 + | hypothetical protein RHA1_ro02679 2833617 - 2834741 + | NADH:flavin oxidoreductase RHA1_ro02680 2834763 - 2835005 + | hypothetical protein RHA1_ro02681 2835439 - 2835089 - | hypothetical protein TERM 930 2835361 - 2835335 - G 70 -12.2 -3.28712 | overlap 2835350 GGTCCCCTCGTAGAA CGCTTGCCGGGA GAA TCCCGGCATCCG GCAGCACGCCGCGAC RHA1_ro02682 2836798 - 2835452 - | MFS superfamily proline/ betaine transporter TERM 931 2836617 - 2836603 - G 81 -7.8 -4.67011 | overlap 2836590 2836604 AAGCCGACGCAAAAA CGGCCA GGC TGGCCA ACAACGCAGCAGTCG TERM 932 2836722 - 2836743 + g 90 -7.2 -4.98616 | overlap 2836724 ACGATTGTTCCCGTG GACGCGGC AATCAG GCCGCGTA TTTTTCCTCTTTTCG TERM 933 2836724 - 2836741 + g 75 -9.8 -4.09348 | overlap 2836722 GATTGTTCCCGTGGA CGCGGC AATCAG GCCGCG TATTTTTCCTCTTTT TERM 934 2837041 - 2836983 - R 93 -17.7 -3.51232 | opp_overlap 2836999, overlap 2836984 2836987 2836995 TTCGGTGGAAATTAA TCGATTGACGAATGGAGTCGGTCCG-TGT TGA ACAGCGGACCGACTCCATTCGGCAGTCT- CCCACTCAACCTCGA TERM 935 2837041 - 2836984 - R 100 -23.7 -2.70525 | gap 1, opp_overlap 2836999, overlap 2836983 2836987 2836995 TCGGTGGAAATTAAT CGATTGACGAATGGAGTCGGTCCG-TGT TGA ACAGCGGACCGACTCCATTCGGCAGTCT CCCACTCAACCTCGA TERM 936 2837038 - 2836987 - R 100 -24 -2.6342 | gap 1, opp_overlap 2836999, overlap 2836983 2836984 2836995 GTGGAAATTAATCGA TTGACGAATGGAGTCGGTCCG-TGT TGA ACAGCGGACCGACTCCATTCGGCAG TCTCCCACTCAACCT TERM 937 2837030 - 2836995 - R 100 -21.4 -3.19389 | gap 1, opp_overlap 2836999, overlap 2836987 2836983 2836984 TAATCGATTGACGAA TGGAGTCGGTCCG-TGT TGA ACAGCGGACCGACTCCA TTCGGCAGTCTCCCA TERM 938 2836999 - 2837026 + r 74 -15 -2.53015 | gap 1, opp_overlap 2836995 2836987 2836983 2836984 CGATTGACGAATGGA GTCGGTCCG-TGT TGA ACAGCGGACCGAC TCCATTCGGCAGTCT TERM 939 2837215 - 2837193 - R 70 -11.2 -3.34043 | CTCACCAGCCCAGAA CCCGAGTCAG ATT CCGGCTCGGG CTGCTACGTCGCACG RHA1_ro02683 2838798 - 2837302 - | succinate-semialdehyde dehydrogenase (NAD(P)+) TERM 940 2837721 - 2837665 - G 72 -15.3 -2.94293 | overlap 2837662 CGGGGAATAGAAGTA GCCATCGC-C-CGGCACCGGTCGACCGCC GGT GACGATCG-C-GGCGCCGTGTGCGACGGC GTCCTGGACCAGGTC TERM 941 2838592 - 2838648 + g 82 -16.3 -3.29511 | CTTCTGAGCGGTGGC CGCGGCGTCGAGGGCGGTGGCTCCGTC GGC GACGGTGGCGTCGGCCACGACGGCGAG TTCTCGGCCGGTCGC RHA1_ro02684 2839900 - 2838788 - | zinc-containing alcohol dehydrogenase RHA1_ro02685 2840318 - 2839953 - | CoA ligase RHA1_ro02686 2841298 - 2840372 - | metallo beta lactamase superfamily protein TERM 942 2842384 - 2842369 - g 72 -9 -4.00934 | ACGTGAAAGACCAAA TCGTCG CCAA CGACGA ACGCGCGACCCAACT TERM 943 2842648 - 2842627 - g 74 -10.9 -3.73402 | AGAGCTGCCAGGAAA TCGTCGACG GCAT CATCGACGA GGCCGACCGCATCAT RHA1_ro02687 2841717 - 2842721 + | 2-nitropropane dioxygenase RHA1_ro02688 2842724 - 2843632 + | enoyl-CoA hydratase RHA1_ro02689 2844145 - 2843762 - | hypothetical protein RHA1_ro02690 2844285 - 2844554 + | hypothetical protein TERM 944 2844803 - 2844772 - g 74 -11.6 -3.75105 | GGAAGCGACGAAGAA CGAGATGCTCCACC CCCG GATGGAGCACGTCG ATGGGGTCGATCACC RHA1_ro02691 2844551 - 2845201 + | TetR family transcriptional regulator RHA1_ro02692 2847180 - 2845837 - | major facilitator superfamily multidrug resistance protein TERM 945 2847664 - 2847685 + r 91 -7.2 -4.98616 | overlap 2847666 ACGATTGTTCCCGTG GACGCGGC AATCAG GCCGCGTA TTTTTCCTCTTTTCG TERM 946 2847666 - 2847683 + r 76 -9.8 -4.09348 | overlap 2847664 GATTGTTCCCGTGGA CGCGGC AATCAG GCCGCG TATTTTTCCTCTTTT RHA1_ro02693 2847992 - 2847750 - | hypothetical protein TERM 947 2847972 - 2847937 - G 93 -21.4 -3.18264 | gap 1, opp_overlap 2847941 TGGTCGATTGACGAA TGGAGTCGGTCCG-TGT TGA ACAGCGGACCGACTCCA TTCGGCGGTCTCCCA TERM 948 2848157 - 2848135 - R 70 -11.2 -3.34043 | opp_overlap 2848134 2848124 2848156 CTCACCAGCCCAGAA CCCGAGTCAG ATT CCGGCTCGGG CTGCTATGTCGCACG RHA1_ro02694 2849175 - 2848141 - | phosphotransferase fabG 2849950 - 2849168 - | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro02696 2851205 - 2849952 - | acyl-CoA dehydrogenase RHA1_ro02697 2851995 - 2851183 - | enoyl-CoA hydratase RHA1_ro02698 2852810 - 2851992 - | short chain dehydrogenase RHA1_ro02699 2853292 - 2853600 + | 2-nitropropane dioxygenase TERM 949 2853620 - 2853632 + T 70 -4.8 -4.33248 | TCACGAGTTCGCGGG GACG TAGGT CGTC TTTATTCTCGGGTTC RHA1_ro02700 2854348 - 2853968 - | hypothetical protein TERM 950 2854254 - 2854289 + g 85 -19 -3.07816 | gap 1, overlap 2854262 CGATGTTTGGAGTGG CTGGCGCGCGCTCCGGC CTG GCTGGCGCG-GCGCCAG TTCGATCGGTGCCAG TERM 951 2855178 - 2855202 + G 78 -8.5 -4.34402 | overlap 2855179 CGCGTCCGGTGAGCT GCCGTGCATCA TCT TGACGCACGGG TTTTCGTGTACCAAG RHA1_ro02701 2855095 - 2856012 + | acetyl xylan esterase TERM 952 2856802 - 2856756 - g 70 -3.7 -4.40132 | opp_overlap 2856775, overlap 2856757 ATGAAGGACAACAAA TCATCCCCG-TACGACTGGACCG AAA CGGTCG-GTCTTAACGCGGATGG CCAGATCGTGGGGTT RHA1_ro02702 2856351 - 2856836 + | hypothetical protein RHA1_ro02703 2856949 - 2857278 + | hypothetical protein RHA1_ro02704 2857373 - 2859157 + | long-chain-fatty-acid--CoA ligase RHA1_ro02705 2859160 - 2860362 + | metallo-beta-lactamase superfamily protein TERM 953 2860897 - 2860882 - g 72 -9 -4.00934 | ACGTGAAAGACCAAA TCGTCG CCAA CGACGA ACGCGCGACCCAACT TERM 954 2861161 - 2861140 - g 74 -10.9 -3.73402 | AGAGCTGCCAGGAAA TCGTCGACG GCAT CATCGACGA GGCCGACCGCATCAT RHA1_ro02706 2860434 - 2861234 + | nitropropane dioxygenase RHA1_ro02707 2861237 - 2862118 + | enoyl-CoA hydratase TERM 955 2863679 - 2863667 - g 72 -6.9 -4.2461 | overlap 2863668 ACCGGGATCAAGAAA GCCCG CGC CGAGC AGGACGGCCGGTCCG RHA1_ro02708 2862719 - 2864506 + | long-chain-fatty-acid--CoA ligase RHA1_ro02709 2864880 - 2865356 + | hypothetical protein RHA1_ro02710 2865571 - 2866074 + | hypothetical protein TERM 956 2866275 - 2866299 + G 78 -8.5 -4.25104 | overlap 2866276 CGTGTCCGGTGAGCT GCCGTGCGTGA TCA TGACGCACGGG TTTTCGTGCACCAAG RHA1_ro02711 2866165 - 2867109 + | hypothetical protein TERM 957 2867126 - 2867184 + T 100 -24.7 -2.65264 | gap 1, overlap 2867117 ATCGGGGGCTGTCAT -CGCGGCGGCCTCTCCTCGTTCCCCC ATCAAGGC GCGGGCACGAGGAGAGGTCGCCGCGA TGCTGTCGGTGGTCG RHA1_ro02712 2867975 - 2867349 - | TetR family transcriptional regulator TERM 958 2867947 - 2867959 + g 70 -4.1 -4.4773 | GCCTTCAGGAGGCGA TCTCG CGG TGAGA TTTTCGTTGCTGTCA RHA1_ro02713 2868231 - 2869157 + | beta-lactamase RHA1_ro02714 2869236 - 2869757 + | enoyl-CoA hydratase RHA1_ro02715 2869771 - 2870916 + | long-chain-acyl-CoA dehydrogenase RHA1_ro02716 2874562 - 2871245 - | protein kinase/ LuxR family transcriptional regulator RHA1_ro02717 2874848 - 2874573 - | hypothetical protein RHA1_ro02718 2875030 - 2875560 + | hypothetical protein TERM 959 2875763 - 2875724 - T 77 -12.2 -3.5594 | gap 2, opp_overlap 2875752 2875753, overlap 2875711 AAGGCACTGCCCAAA CGTCGGCGCCCGGTAGCA ACGTCG TGG-ACCGGGCGCCG-CG GACAAGGCGCCCCCT pntB2 2877620 - 2876202 - | NAD(P) transhydrogenase beta subunit TERM 960 2877224 - 2877270 + g 70 -12.9 -3.31144 | opp_overlap 2877203 2877201, overlap 2877225 2877227 CACTGTGGATGCCGA GCAGTCCGGCGGCCTCGAG CACCGCCGA CTCGTGGCCGCCGGGGTGG TTCTCGACGTGCAGG TERM 961 2877225 - 2877269 + g 73 -16.4 -2.58544 | opp_overlap 2877201, overlap 2877224 2877227 ACTGTGGATGCCGAG CAGTCCGGCGGCCTCGAG CACCGCCGA CTCGTGGCCGCCGGGGTG GTTCTCGACGTGCAG pntA 2879146 - 2877626 - | NAD(P) transhydrogenase subunit alpha RHA1_ro02721 2879301 - 2879143 - | acyl-CoA dehydrogenase, C-terminal RHA1_ro02722 2880329 - 2879301 - | phosphotransferase TERM 962 2880059 - 2880022 - G 73 -7.6 -4.17417 | TCAATGACATAGAAA TCCGCGCCCAGCACCG CAGGAT CGGTGCACAACGCGAA GGTCCGTGGGACCGG RHA1_ro02723 2880781 - 2880329 - | acyl dehydratase RHA1_ro02724 2881542 - 2880778 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02725 2882198 - 2881539 - | hydrolase fabG 2882961 - 2882203 - | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro02727 2883224 - 2882973 - | thiolase, C-terminal RHA1_ro02728 2884272 - 2883238 - | hypothetical protein TERM 963 2884105 - 2884147 + g 93 -19.2 -3.53091 | opp_overlap 2884105 CGTCTCCGGCGCAAA CCGACTCCTTCGCAGGAGCT TGG AGAAGCTGCGAAGGAGTCGG TTTGCGAGGGAACGT TERM 964 2884147 - 2884105 - G 93 -19.2 -3.53012 | opp_overlap 2884105 CGTCTCCGGCGCAAA CCGACTCCTTCGCAGGAGCT TGG AGAAGCTGCGAAGGAGTCGG TTTGCGAGGGAACGT RHA1_ro02729 2887093 - 2884736 - | LuxR family transcriptional regulator TERM 965 2884989 - 2885030 + g 95 -17.3 -3.70902 | gap 1 GCGCCGGCCCGTTGC CGCTCGCGGAGGGGTTCGCC CAA GGCGAATGCCACCGC-AGCG TTTCCGTCTAGGCCG RHA1_ro02730 2887335 - 2887757 + | hypothetical protein TERM 966 2887944 - 2887900 - T 100 -32.4 -3.01791 | gap 1, opp_overlap 2887900 2887934, overlap 2887902 ATCGGCTGGTCAAGA CACCGCGGCGGACTGGC-TCG GTCA CGACGCCAGTCCGCCGCGGTG TTTCGGCGTCGCGAA TERM 967 2887900 - 2887944 + T 100 -32.4 -3.57144 | gap 1, opp_overlap 2887900 2887902, overlap 2887934 ATCGGCTGGTCAAGA CACCGCGGCGGACTGGC-TCG GTCA CGACGCCAGTCCGCCGCGGTG TTTCGGCGTCGCGAA TERM 968 2887942 - 2887902 - T 100 -29.2 -3.06696 | gap 1, opp_overlap 2887900 2887934, overlap 2887900 CGGCTGGTCAAGACA CCGCGGCGGACTGGC-TCG GTCA CGACGCCAGTCCGCCGCGG TGTTTCGGCGTCGCG RHA1_ro02731 2889026 - 2888013 - | NADP-dependent oxidoreductase TERM 969 2888436 - 2888478 + g 74 -12.7 -3.56325 | gap 1, opp_overlap 2888427, overlap 2888464 2888465 2888467 GAACGATTCGTCACG GTAGCTCACCGCCGCG-TCG AATC CGAGCTCGGAGGTGAGCCAC TTCTGCTTCTCGGGG RHA1_ro02732 2889448 - 2889023 - | ketosteroid isomerase-related protein RHA1_ro02733 2890401 - 2889766 - | transcriptional regulator TERM 970 2890361 - 2890320 - G 91 -21.5 -3.01712 | opp_overlap 2890328 CCTTGGCGGCGAACA CCTCGATGGCCGCGGCGCG TATC CGCGCAGCGGCTTTCGAGG TACCCAGCTCGGCGA TERM 971 2890328 - 2890353 + g 93 -17.5 -3.57144 | opp_overlap 2890320 GCGAACACCTCGATG GCCGCGGCGCG TATC CGCGCAGCGGC TTTCGAGGTACCCAG TERM 972 2890459 - 2890491 + H 84 -13.6 -3.59262 | opp_overlap 2890461 2890466 2890478 CCGACACAATCAGTA TATGCAAGCGCATA GTAAA TATGCGCATGCATA TTTCCCGCTATCCGC RHA1_ro02734 2890557 - 2891774 + | acetyl-CoA acetyltransferase TERM 973 2892436 - 2892391 - g 79 -14.6 -3.32946 | opp_overlap 2892435, overlap 2892389 TTCCGAAGGAGAAGA TCGGCGAGGTCACCGGTCCG ATCTCG CGGTTCGCCGACCCCGCCGA GATGGCCGACGCCAT RHA1_ro02735 2891796 - 2892527 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02736 2892559 - 2894355 + | acyl CoA dehydrogenase TERM 974 2894673 - 2894657 - g 71 -11.5 -3.61398 | CGTTCTCGTCAACAA CGCCGGC GTC GCCAGCG CCCACCCCGCCACCC TERM 975 2894757 - 2894729 - g 82 -16.8 -3.25823 | gap 1 GGTGGTCGACATCAA CCTGGGCGGCTCC TACT GGA-CCGCCCAGG CGTGCGGGAAGGTCA RHA1_ro02737 2894373 - 2895134 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02738 2895178 - 2895633 + | hypothetical protein RHA1_ro02739 2895742 - 2896083 + | Na+ dependent symporter protein RHA1_ro02740 2896080 - 2896538 + | thioesterase RHA1_ro02741 2896958 - 2896707 - | hypothetical protein TERM 976 2897146 - 2897171 + G 85 -16.9 -3.59262 | CGTGTGTCACGGCTA CCCGCATCACC GTGC GGTGGTGCGGG TTTGACCGTGTCCCA RHA1_ro02742 2897095 - 2897355 + | hypothetical protein RHA1_ro02743 2899178 - 2897868 - | hypothetical protein RHA1_ro02744 2900208 - 2899168 - | ABC transporter ATP-binding protein RHA1_ro02745 2900859 - 2900254 - | hypothetical protein RHA1_ro02746 2901422 - 2900856 - | Mce associated protein RHA1_ro02747 2902822 - 2901419 - | Mce family protein TERM 977 2902506 - 2902488 - G 71 -9.6 -3.72576 | overlap 2902497 GTCGTGGGGACGAAA TCGACGAA CTG TTCGCCGA CCGCGGACATGCTGC RHA1_ro02748 2903937 - 2902819 - | Mce family protein RHA1_ro02749 2905103 - 2903934 - | Mce family protein RHA1_ro02750 2906098 - 2905103 - | Mce family protein RHA1_ro02751 2906946 - 2906098 - | Mce family protein RHA1_ro02752 2907316 - 2907110 - | hypothetical protein TERM 978 2908449 - 2908470 + G 71 -11.6 -3.62597 | opp_overlap 2908445 CGCGCATGACATGGA GCAGTCCG ACCGCC CGGACTGC TTCTTCCACAATCGA RHA1_ro02753 2907547 - 2908668 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase RHA1_ro02754 2908895 - 2910040 + | long-chain-acyl-CoA dehydrogenase RHA1_ro02755 2910103 - 2910948 + | hypothetical protein RHA1_ro02756 2911419 - 2911838 + | hypothetical protein RHA1_ro02757 2912736 - 2912179 - | transposase RHA1_ro02758 2913283 - 2912759 - | transposase TERM 979 2912876 - 2912886 + g 75 -8.2 -4.2349 | overlap 2912877 TAGCGACTCGACCAT CCCG TCA CGGG TTTTCGGTGTGACGG RHA1_ro02759 2913753 - 2913559 - | transposase RHA1_ro02760 2914236 - 2913826 - | transposase TERM 980 2913973 - 2913957 - G 72 -4.3 -4.62069 | opp_overlap 2913966 CTCGGACGCGAAAAA TGCACTC GCC GCGCGCA ATACGTCGTTGACAC TERM 981 2914402 - 2914430 + H 77 -14.5 -2.87132 | TCGGCCGCCCCTGTG TCGCCGGTGGCGA ACC TGGCCTCCGGCGA TCTGTCCCACGGCGC RHA1_ro02761 2914477 - 2916408 + | transposase TERM 982 2916607 - 2916594 - g 75 -9.5 -4.07885 | CATCGCCGGCGAAAA CGCGC ACTC GCGCG AGTTCACCGAAGAGG RHA1_ro02762 2916523 - 2916753 + | hypothetical protein RHA1_ro02763 2918190 - 2917258 - | hypothetical protein RHA1_ro02764 2918451 - 2918657 + | hypothetical protein RHA1_ro02765 2919064 - 2919519 + | ATP-dependent Clp protease ATP-binding subunit RHA1_ro02766 2919887 - 2919600 - | hypothetical protein RHA1_ro02767 2920403 - 2919993 - | anti-sigma factor RHA1_ro02768 2921130 - 2920591 - | hypothetical protein RHA1_ro02769 2921699 - 2921127 - | hypothetical protein RHA1_ro02770 2922350 - 2921943 - | hypothetical protein RHA1_ro02771 2923550 - 2922684 - | hydrolase TERM 983 2922973 - 2922963 - G 70 -8.2 -3.89346 | GGTGGAGGCGAGAAA CGCG GCT CGCG AAGACTTGTCGGACA TERM 984 2923024 - 2923061 + g 71 -11.9 -3.61774 | gap 1, overlap 2923027 GTTTCGGTGGCGCTG CGACTGGGCT-GCACGGG CAG CCCGAGCCGGCCCAGGTG TTTGAGGATGTTCTC RHA1_ro02773 2925125 - 2924322 - | flavodoxin (beta-lactamase-like) RHA1_ro02772 2923707 - 2924393 + | hypothetical protein RHA1_ro02774 2925607 - 2925137 - | hypothetical protein RHA1_ro02775 2925710 - 2926855 + | LuxR family transcriptional regulator RHA1_ro02776 2927620 - 2927150 - | hypothetical protein RHA1_ro02777 2929081 - 2927741 - | transposase RHA1_ro02778 2929135 - 2929317 + | hypothetical protein RHA1_ro02779 2929710 - 2930057 + | cytochrome P450 CYP144, C-terminal RHA1_ro02780 2930054 - 2930710 + | TetR family transcriptional regulator RHA1_ro02781 2930744 - 2932453 + | acyl-CoA synthetase RHA1_ro02782 2932450 - 2935671 + | carboxylase RHA1_ro02783 2936736 - 2935693 - | dehydrogenase RHA1_ro02784 2937853 - 2936783 - | L-iditol 2-dehydrogenase RHA1_ro02785 2938827 - 2937889 - | carbohydrate kinase RHA1_ro02786 2939441 - 2938827 - | 2-dehydro-3-deoxy-phosphogluconate aldolase RHA1_ro02787 2940829 - 2939438 - | major facilitator transporter TERM 985 2940566 - 2940548 - G 74 -11.6 -3.79906 | overlap 2940550 GTACCGCGAGAAGAA CAGGCCGC CGA GCGGCCGG GCGAGAAACCCGACG TERM 986 2940564 - 2940550 - G 73 -12.8 -3.48378 | overlap 2940548 ACCGCGAGAAGAACA GGCCGC CGA GCGGCC GGGCGAGAAACCCGA RHA1_ro02788 2942404 - 2940869 - | fructuronate reductase TERM 987 2941222 - 2941204 - G 75 -9.6 -4.04206 | overlap 2941208 2941221 CGACTGTGAGAGAAA GGTACTGC GGG ACAGTACC GCGGCGGAGGTGTTC TERM 988 2941808 - 2941819 + g 82 -5.8 -4.70659 | opp_overlap 2941808, overlap 2941773 GAACGTGCCGACGAA CTCG CGGA CGAG TTTTTCGGTCTGACG RHA1_ro02789 2943627 - 2942410 - | mandelate racemase/ starvation sensing protein TERM 989 2943524 - 2943557 + g 74 -15.3 -3.04144 | CCGTTGAGCGTGGCG TCACCGTAGCCGACG ACGC CGTCGGCGGTGGTGA TCTTCAGGGTGACGA RHA1_ro02790 2944628 - 2943624 - | phosphoglycerate dehydrogenase RHA1_ro02791 2945645 - 2944629 - | LacI family transcription regulator RHA1_ro02792 2946732 - 2945758 - | alkanal monooxygenase nos 2946856 - 2948004 + | nitric oxide synthase oxygenase RHA1_ro02794 2948967 - 2947972 - | LysR family transcriptional regulator mdlC 2949009 - 2950595 + | benzoylformate decarboxylase RHA1_ro02796 2950649 - 2952019 + | aromatic acid symporter mdlD 2952047 - 2953504 + | benzaldehyde dehydrogenase (NAD+) RHA1_ro02798 2954001 - 2953531 - | hypothetical protein RHA1_ro02799 2954070 - 2954648 + | TetR family transcriptional regulator RHA1_ro02800 2956081 - 2954657 - | major facilitator superfamily multidrug resistance protein RHA1_ro02801 2956533 - 2956078 - | MarR family transcriptional regulator TERM 990 2956570 - 2956580 + H 78 -3.2 -4.86731 | overlap 2956551 GTCAGGTTCATTAGC CAGT CTA GCTG TTTTATTTGCGAACC RHA1_ro02802 2956794 - 2957990 + | lipoprotein RHA1_ro02803 2958000 - 2959409 + | oxidase RHA1_ro02804 2960649 - 2959564 - | ABC sugar transporter, ATP-binding component RHA1_ro02805 2961579 - 2960701 - | ABC sugar transporter, permease component RHA1_ro02806 2962544 - 2961579 - | ABC sugar transporter, permease component RHA1_ro02807 2963866 - 2962541 - | ABC sugar transporter, substrate-binding component RHA1_ro02808 2964941 - 2963919 - | transcriptional regulator RHA1_ro02809 2965092 - 2966096 + | L-iditol 2-dehydrogenase RHA1_ro02810 2966107 - 2967588 + | mannitol 2-dehydrogenase RHA1_ro02811 2967585 - 2968508 + | fructokinase RHA1_ro02812 2968505 - 2969887 + | xylulokinase RHA1_ro02813 2970948 - 2969941 - | NADP dependent oxidoreductase RHA1_ro02814 2971360 - 2970974 - | hypothetical protein RHA1_ro02815 2971441 - 2972034 + | TetR family transcriptional regulator RHA1_ro02816 2973310 - 2972072 - | allantoate amidohydrolase RHA1_ro02817 2974731 - 2973415 - | glutamate synthase large subunit TERM 991 2973600 - 2973616 + g 74 -12.3 -3.63569 | CGAGCCGCCGTCCGC CCTCGAC GGG GTCGAGG TTCTTCGACAGTTCC RHA1_ro02818 2975440 - 2974742 - | formyl-methanofuran dehydrogenase RHA1_ro02819 2976324 - 2975428 - | glutamine amidotransferase-like protein glnA3 2977710 - 2976349 - | glutamate--ammonia ligase RHA1_ro02821 2978950 - 2977757 - | sarcosine oxidase beta subunit RHA1_ro02822 2979264 - 2979647 + | ethanolamine utilization protein EutQ RHA1_ro02823 2979654 - 2980190 + | hypothetical protein RHA1_ro02824 2980187 - 2981164 + | phthalate 4,5-dioxygenase RHA1_ro02825 2981161 - 2982159 + | hypothetical protein RHA1_ro02826 2982204 - 2982731 + | transcriptional regulator RHA1_ro02827 2983328 - 2982777 - | hypothetical protein RHA1_ro02828 2983530 - 2984882 + | ammonium transporter TERM 992 2984942 - 2984901 - T 100 -26.7 -3.02471 | opp_overlap 2984903, overlap 2984904 CGCGCACGACACAGA CAATGGCCCTGCCCCGCAG CACT CCACGGGGCAGGGCCACTG GTGTGCCCAGCTAGG TERM 993 2984903 - 2984940 + T 81 -16.9 -2.62396 | opp_overlap 2984901 2984904 CGCACGACACAGACA ATGGCCCTGCCCCGCAG CACT CCACGGGGCAGGGCCAC TGGTGTGCCCAGCTA TERM 994 2984939 - 2984904 - T 100 -24.8 -3.65656 | opp_overlap 2984903, overlap 2984901 GCACGACACAGACAA TGGCCCTGCCCCGCAG CACT CCACGGGGCAGGGCCA CTGGTGTGCCCAGCT RHA1_ro02829 2985528 - 2984953 - | transcriptional regulator RHA1_ro02830 2986286 - 2985621 - | transcriptional regulator RHA1_ro02831 2986457 - 2987944 + | aldehyde dehydrogenase RHA1_ro02832 2987985 - 2989100 + | formaldehyde dehydrogenase (glutathione) TERM 995 2989107 - 2989154 + F 88 -17.7 -3.12668 | gap 1, overlap 2989109 TATTCGTAGATCGGC ACA-GTCGGGAGCGGTGGGGCG CTGCA CGCCTCTCCGCTCCCGGCATGG TTCCCTGTCCCCATG TERM 996 2989109 - 2989151 + F 93 -20.5 -2.77182 | overlap 2989107 TTCGTAGATCGGCAC AGTCGGGAGCGGTGGGGCG CTGCA CGCCTCTCCGCTCCCGGCA TGGTTCCCTGTCCCC RHA1_ro02833 2989294 - 2989875 + | TetR family transcriptional regulator tynA 2990048 - 2992006 + | tyramine oxidase RHA1_ro02835 2991999 - 2993438 + | phenylethylamine permease RHA1_ro02836 2994002 - 2995711 + | metal-dependent amidohydrolase TERM 997 2995734 - 2995767 + T 100 -24 -3.37796 | opp_overlap 2995734, overlap 2995761 ATCGATACGTCAGAA CTGCCGGTTCGCCG CTCGGT CGGCGAACCGGCAG TTCTGCGTCCTACCC TERM 998 2995767 - 2995734 - T 100 -24 -3.3514 | opp_overlap 2995734 2995761 ATCGATACGTCAGAA CTGCCGGTTCGCCG CTCGGT CGGCGAACCGGCAG TTCTGCGTCCTACCC RHA1_ro02837 2996063 - 2995794 - | hypothetical protein RHA1_ro02838 2997668 - 2996163 - | sensor kinase, two-component system RHA1_ro02839 2997867 - 2999027 + | aromatic ring hydroxylase RHA1_ro02840 2999056 - 2999433 + | hypothetical protein RHA1_ro02841 2999439 - 2999939 + | hypothetical protein RHA1_ro02842 2999939 - 3001213 + | large subunit of ring-hydroxylating dioxygenase RHA1_ro02843 3001203 - 3001706 + | ring-cleavage dioxygenase, small subunit RHA1_ro02844 3001748 - 3002488 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro02845 3002535 - 3003494 + | vanillate O-demethylase oxidoreductase RHA1_ro02846 3004130 - 3003510 - | response regulator, two-component system hpaC 3004356 - 3004949 + | reductase, monooxygenase component RHA1_ro02848 3004952 - 3005245 + | hypothetical protein paaL 3005251 - 3006801 + | SSF family Na(+)/solute symporter RHA1_ro02850 3006798 - 3008075 + | indoleacetamide hydrolase TERM 999 3008090 - 3008118 + T 77 -13.1 -3.33696 | opp_overlap 3008084 3008079 ACAACGACAGGAAGG CGTCAGTCGACGA AGA TCGACGGCTGGCG TTCCTTCCACGGCGC RHA1_ro02851 3008391 - 3008092 - | amidase, C-terminal RHA1_ro02852 3008972 - 3008388 - | amidase TERM 1000 3009215 - 3009173 - R 74 -12.7 -3.21099 | GTCCTTGATGACGAA CGGCACCCCG-CCAGTGGACC GTC GGTCCGGTGGTCGAGG-GCCG GATCGAACATGGGCA paaR 3010413 - 3009385 - | AraC family transcriptional regulator TERM 1001 3009975 - 3009939 - G 73 -16.7 -2.65766 | gap 2, overlap 3009929 3009930 GGAAAGGCGAGACGA GCGCGCC-CATCC-CGG TGCTG CCGCGGATGCGGCGCGC CGAGACGGTGCCCAG paaF 3011723 - 3010425 - | phenylacetate-CoA ligase TERM 1002 3011365 - 3011401 + g 73 -16.5 -2.62184 | overlap 3011364 CCCGCCCGCAGGCTC CGGGCGACCAGATCGGC CCA GTTGTTCAGGTCGCCCG TGGTGTACCCGACGA paaK 3012853 - 3011756 - | phenylacetic acid degradation ring hydroxlyating complex protein 5 paaJ 3013365 - 3012856 - | phenylacetic acid degradation ring hydroxlyating complex protein 4 paaI 3014296 - 3013367 - | phenylacetic acid degradation ring hydroxlyating complex protein 3 paaH 3014598 - 3014293 - | phenylacetate-CoA oxygenase subunit PaaB paaG 3015548 - 3014595 - | phenylacetate-CoA oxygenase subunit PaaA paaB 3016426 - 3015635 - | enoyl-CoA hydratase paaC 3017320 - 3016466 - | 3-hydroxyacyl-CoA dehydrogenase paaA 3018045 - 3017317 - | enoyl-CoA hydratase paaE 3019262 - 3018042 - | beta-ketoadipyl CoA thiolase paaN 3019422 - 3021461 + | bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase RHA1_ro02865 3021458 - 3021775 + | ethyl tert-butyl ether degradation protein EthD paaD 3021783 - 3022196 + | thioesterase RHA1_ro02867 3026719 - 3022229 - | DNA helicase RHA1_ro02868 3027878 - 3027267 - | hypothetical protein RHA1_ro02869 3027954 - 3028292 + | ArsR family transcriptional regulator RHA1_ro02870 3029071 - 3028319 - | GntR family transcriptional regulator RHA1_ro02871 3030254 - 3029103 - | acyl CoA dehydrogenase RHA1_ro02872 3030435 - 3031283 + | citrate (pro-3S)-lyase RHA1_ro02873 3031280 - 3032287 + | MaoC family protein RHA1_ro02874 3032313 - 3033524 + | formyl-coenzyme A transferase RHA1_ro02875 3034750 - 3033650 - | LacI family transcription regulator TERM 1003 3034890 - 3034863 - H 71 -9.8 -3.79251 | opp_overlap 3034864, overlap 3034864 TATCGCACGATGAAA TCGTTCACGGGA ACGT TCCCGGGAACGT TTGCAAAAGTCTCCT TERM 1004 3034864 - 3034889 + H 78 -13.3 -3.55071 | opp_overlap 3034863 3034864 ATCGCACGATGAAAT CGTTCACGGGA ACGT TCCCGGGAACG TTTGCAAAAGTCTCC dapA2 3034925 - 3035863 + | dihydrodipicolinate synthase TERM 1005 3035901 - 3035931 + F 89 -16.9 -3.28712 | gap 1, opp_overlap 3035881 3035897, overlap 3035901 GATTCACCGAATCCG CCG-CACGCGGTGC CACC GCGCCGCGTGCCGG TTCTGCCGCCCGGCC TERM 1006 3035901 - 3035930 + F 81 -17.1 -2.57132 | opp_overlap 3035881 3035897, overlap 3035901 GATTCACCGAATCCG CCGCACGCGGTGC CACC GCGCCGCGTGCCG GTTCTGCCGCCCGGC RHA1_ro02877 3036140 - 3037390 + | manganese transporter NRAMP RHA1_ro02878 3037481 - 3037759 + | hypothetical protein RHA1_ro02879 3038702 - 3037845 - | haloalkane dehalogenase RHA1_ro02880 3038772 - 3039374 + | hypothetical protein RHA1_ro02881 3040859 - 3039501 - | monooxygenase RHA1_ro02882 3042303 - 3040888 - | monooxygenase RHA1_ro02883 3043538 - 3042300 - | acyl-CoA ligase RHA1_ro02884 3044845 - 3043754 - | hypothetical protein RHA1_ro02885 3045274 - 3045008 - | hypothetical protein RHA1_ro02886 3045309 - 3045659 + | hypothetical protein RHA1_ro02887 3045940 - 3047301 + | major facilitator superfamily sugar transporter RHA1_ro02888 3048093 - 3047305 - | GntR family transcriptional regulator TERM 1007 3048187 - 3048205 + H 84 -11.8 -3.97947 | overlap 3048170 TCACATCATCCGCTT GTGTGATC TGT GATCACAC TTTATCCTCAATGGA RHA1_ro02889 3048227 - 3049783 + | amine oxidase TERM 1008 3050130 - 3050118 - g 72 -9.1 -4.07568 | opp_overlap 3050127 CCGCGCCGCCGAAAA GTCGG GCG CCGAC GTGCTCATGCTGATC RHA1_ro02890 3049828 - 3050721 + | dihydrodipicolinate synthase RHA1_ro02891 3050725 - 3052212 + | Na+/ alanine symporter RHA1_ro02892 3052329 - 3053840 + | aldehyde dehydrogenase TERM 1009 3053926 - 3053886 - f 100 -24.7 -3.53224 | opp_overlap 3053886 3053886, overlap 3053887 GACCGTCGTGCGAAA CGTGGCGCCCGCCCTGTTC TCT GCACAGGGCGGGCGCCGCA GTCCTCTGCCGGCGT TERM 1010 3053886 - 3053927 + F 100 -24.5 -2.62396 | gap 1, opp_overlap 3053886 3053887, overlap 3053886 GACCGTCGTGCGAAA C-GTGGCGCCCGCCCTGTTC TCT GCACAGGGCGGGCGCCGCAG TCCTCTGCCGGCGTC TERM 1011 3053925 - 3053887 - f 100 -26 -2.71791 | opp_overlap 3053886 3053886, overlap 3053886 ACCGTCGTGCGAAAC GTGGCGCCCGCCCTGTTC TCT GCACAGGGCGGGCGCCGC AGTCCTCTGCCGGCG TERM 1012 3054193 - 3054137 - g 75 -16.8 -2.91681 | gap 3 CCCGAAGGTGAGACA CGGG-AGGCCCGGC-GATACCGGGTAG ACTTCG CCACCCGG-ATCTGCCAGACCTGCCCG GTCCTCGAGCAATGC RHA1_ro02893 3054014 - 3054433 + | WhiB family transcriptional regulator RHA1_ro02894 3055210 - 3054629 - | hypothetical protein TERM 1013 3054790 - 3054803 + g 73 -8.1 -4.14392 | overlap 3054781 GGCCGATGGCGGCGA CGGCA TTCT TGCCG TTTTCGGCCTTGGCG RHA1_ro02895 3055968 - 3055207 - | ParA family chromosome partitioning ATPase RHA1_ro02896 3057990 - 3057700 - | hypothetical protein RHA1_ro02897 3058643 - 3058140 - | acyl-CoA thioester hydrolase TERM 1014 3058685 - 3058740 + r 81 -16.4 -2.66602 | gap 2, overlap 3058681 3058686 AGGAGGGCGGTCCGT GGCCGAGCGCGGTGTTGTAGCGATAC TGCGTT GTAGCGCTACAACACCGCG-T-GCCC TGGCTTCTTGGCTCC TERM 1015 3058686 - 3058744 + r 84 -14.1 -3.68569 | gap 3, overlap 3058681 3058685 GGAGGGCGGTCCGTG GCC-GAGC--GCGGTGTTGTAGCGATAC TGCGTT GTAGCGCTACAACACCGCGTGCCCTGGC TTCTTGGCTCCGTCC TERM 1016 3058782 - 3058813 + r 72 -6.4 -4.26344 | opp_overlap 3058800, overlap 3058800 3058803 3058808 ACCGTTGCGGGCGTG GTGCGACACGGGTG AAAG TACCCGCAGCGCAC TTTTCGTGCGGCTAT TERM 1017 3058859 - 3058879 + r 74 -4.6 -4.58663 | CCGCCCCCAGAGCTG CGATTGCC CGGCC GGCGAACG TTTTTGGGGAATGCT RHA1_ro02898 3060313 - 3058838 - | aldehyde dehydrogenase (NADP+) RHA1_ro02899 3061068 - 3060310 - | ribose-5-phosphate isomerase RHA1_ro02900 3061743 - 3061093 - | phosphoglycolate phosphatase RHA1_ro02901 3063272 - 3061740 - | carbohydrate kinase TERM 1018 3062247 - 3062262 + g 78 -6 -4.57569 | opp_overlap 3062240 3062237, overlap 3062239 GAACAGCAGGCCGTC GGCGCC GACG GGCACC TTTTTGGCCAGGTCG RHA1_ro02902 3064750 - 3063272 - | NAD-dependent aldehyde dehydrogenase serA1 3065685 - 3064735 - | phosphoglycerate dehydrogenase RHA1_ro02904 3066874 - 3065687 - | fumarylacetoacetate hydrolase RHA1_ro02905 3067646 - 3066930 - | short chain dehydrogenase RHA1_ro02906 3068716 - 3067667 - | ABC sugar transporter, permease component RHA1_ro02907 3070325 - 3068745 - | ABC sugar transporter, ATP-binding component RHA1_ro02908 3071510 - 3070329 - | sugar ABC transporter substrate-binding protein TERM 1019 3071213 - 3071248 + g 78 -12.6 -3.73224 | gap 1 TGACCTCCGATTCGA TGGCCTTCGCC-GGTCG ACT CGACCCGGTCGAGGCCA TTTGCTCCGGGATGA RHA1_ro02909 3072442 - 3071711 - | GntR family transcriptional regulator RHA1_ro02910 3072444 - 3072734 + | hypothetical protein RHA1_ro02911 3073158 - 3073616 + | hypothetical protein RHA1_ro02912 3074437 - 3073685 - | short chain dehydrogenase RHA1_ro02913 3076476 - 3074434 - | dehydrogenase TERM 1020 3074532 - 3074560 + g 70 -14.5 -2.75064 | opp_overlap 3074515, overlap 3074529 CGTGCGTCCGGAACG GGTCGGCGTCGAC GAC GTCGACGACGTCC TGCTTGCCTGCGGCC TERM 1021 3074651 - 3074666 + g 71 -2.4 -4.66537 | overlap 3074638 3074635 AGCCCGCGGTCGGCG GCGGCC TGCA GGTGGC TTTTGTGTTCGGGAC RHA1_ro02914 3077410 - 3076649 - | transcriptional regulator shiA1 3078781 - 3077429 - | shikimate transport protein RHA1_ro02916 3080205 - 3078928 - | hypothetical protein TERM 1022 3080042 - 3079992 - G 87 -18.2 -3.28712 | opp_overlap 3080038 GCGCGGCGCCGAGAA CGGCGGAATCGATGGGCAGCCGGG GGT CGAGTCCGCCGATCGACTCCGCCG CCGCGTTCGCCGGCG RHA1_ro02917 3080979 - 3080326 - | TetR family transcriptional regulator TERM 1023 3081035 - 3081016 - H 75 -10 -3.92075 | AGTTCCAGTTACAAA CTGACACC GAAC GGTGCCAG ATCACACGCCAGGAG RHA1_ro02918 3081056 - 3081949 + | short chain dehydrogenase RHA1_ro02919 3081980 - 3083476 + | flavin binding monooxygenase RHA1_ro02920 3084549 - 3083509 - | tRNA processing ribonuclease BN RHA1_ro02921 3086814 - 3084592 - | response regulator RHA1_ro02922 3087019 - 3086792 - | hypothetical protein TERM 1024 3088336 - 3088321 - gR 71 -11.8 -3.21276 | overlap 3088319 TGCGGTTCGAGAAGA CCGGCG TGGA CGCCGG GGACGCCACCGCGGA RHA1_ro02923 3087018 - 3088373 + | aromatic acid symporter RHA1_ro02924 3089711 - 3088443 - | peptidase TERM 1025 3089738 - 3089754 + r 70 -7.9 -3.9461 | overlap 3089735 CGATGGTCGCGAGCT CGGCCGG GCT CTGGTCG TTCTTGTTCCGCAGG RHA1_ro02925 3090430 - 3089795 - | hypothetical protein RHA1_ro02926 3091212 - 3090484 - | hypothetical protein TERM 1026 3091695 - 3091644 - R 100 -34.8 -3.04144 | opp_overlap 3091662, overlap 3091662 TTCGCATGCCGAACA CCCCATGTGAGTGGCAAAGCGTGC GCCA GCACCCTTTGCCACTCACATGGGG GTCAGCCGTGGACGT dldH2 3093070 - 3091697 - | dihydrolipoamide dehydrogenase RHA1_ro02928 3094034 - 3093105 - | lipoyl synthase RHA1_ro02929 3094117 - 3094461 + | hypothetical protein TERM 1027 3094486 - 3094465 - f 76 -13.7 -3.09968 | overlap 3094457 TACCGAAGGTGAAGA GCACACCGC AGTG GCGGTGCGC CCAAACTCTCAGGTT TERM 1028 3095121 - 3095102 - g 77 -15 -3.14881 | GAAGTCCGCCACCAA CCGCGTCG TCCT CGACGCGG ACTGCCTGCCACAGA gcvP2 3094533 - 3097487 + | glycine dehydrogenase gcvT 3097484 - 3098599 + | glycine cleavage system aminomethyltransferase T RHA1_ro02932 3098638 - 3099042 + | glycine cleavage system, H protein TERM 1029 3099223 - 3099203 - g 71 -10.3 -3.72374 | overlap 3099201 GCTGACCAACAAATA CGCCGAGGG CTA CCCCGGGCG GCGCTACTACGGCGG glyA2 3099039 - 3100307 + | serine hydroxymethyltransferase TERM 1030 3101022 - 3100996 - g 71 -10.1 -3.78775 | gap 1, overlap 3100981 3100997 TGCTCGAGCACGAAA GCGCCCTCCGGC CCGA GCCGGAGGTC-C GGGCGCGGCTCCTGC sdaA 3100407 - 3101789 + | L-serine ammonia-lyase (L-serine dehydratase) RHA1_ro02935 3103324 - 3101816 - | acetyl-CoA carboxylase carboxyl transferase subunit RHA1_ro02936 3104520 - 3103324 - | formyl-CoA transferase RHA1_ro02937 3106052 - 3104688 - | dicarboxylate carrier protein TERM 1031 3106678 - 3106652 - g 82 -18 -3.09516 | CTCGCGACGATGGAA GCCGAGATCGCC GCG GGCGATCGCGGC GTCGTCGGCGACGAG RHA1_ro02938 3106184 - 3106945 + | GntR family transcriptional regulator RHA1_ro02939 3108133 - 3106952 - | L-carnitine dehydratase RHA1_ro02940 3109845 - 3108130 - | acyl-CoA dehydrogenase TERM 1032 3108354 - 3108401 + g 80 -17.6 -2.84634 | gap 1, opp_overlap 3108342, overlap 3108343 GCAGGGTGGCCATCG CCGCGCGGGCCAGCT-CGTTCGC GTA GCGCGCGCATCCGGCCTGCGCGG TGTCGTCGTCTCCGG RHA1_ro02941 3111209 - 3109842 - | major facilitator transporter RHA1_ro02942 3111346 - 3112236 + | LysR family transcriptional regulator RHA1_ro02943 3113095 - 3112256 - | citrate lyase beta subunit aspA 3114646 - 3113183 - | aspartate ammonia-lyase TERM 1033 3116071 - 3116021 - g 79 -11.6 -3.96892 | overlap 3116052 AAGTCCGAGGAGAAA GCCGAGGCCAAGGCCGGTCGGTCC GCC GAAACGCCTGGCGACGACCTCGGC GACAAGGTCCTCGCC TERM 1034 3116091 - 3116052 - g 100 -20 -3.53012 | overlap 3116021 GTCGGTCCGCCGAAA CGCCTGGCGACGACCTCG GCGA CAAGGTCCTCGCCGGGCG ACACAACGCGGATGG RHA1_ro02945 3114749 - 3116110 + | Na(+)/glutamate:H(+) symporter RHA1_ro02946 3116209 - 3116904 + | GntR family transcriptional regulator TERM 1035 3116959 - 3116919 - T 100 -25.6 -3.1505 | gap 1 ACCAGCCGCTACGAA CGGCCGCCGCGGGC-ATGA TCGG TCATCACCCGCGGCGGCCG TTCGGCGCGCCGGAC RHA1_ro02947 3119191 - 3116912 - | beta-glucosidase RHA1_ro02948 3120501 - 3119299 - | cytochrome P450 CYP199 RHA1_ro02949 3121503 - 3120532 - | phthalate dioxygenase reductase RHA1_ro02950 3122288 - 3121605 - | TetR family transcriptional regulator RHA1_ro02951 3122391 - 3123401 + | oxidoreductase, Zn-binding RHA1_ro02952 3123645 - 3123403 - | hypothetical protein RHA1_ro02953 3124466 - 3123714 - | IclR family transcriptional regulator RHA1_ro02954 3126131 - 3124494 - | anibiotic ABC transporter efflux pump TERM 1036 3125319 - 3125293 - G 74 -15.8 -2.78384 | CGTTCGGCGATCAGA CCGGCGCCGACA TCG CGTCGGCGCAGG AGAGCGTATGCCGCC TERM 1037 3126111 - 3126083 - G 72 -13.7 -3.13639 | overlap 3126071 3126079 3126081 AATCCGAGGAAGACA CCGGCGCCGGCTC CAC GGGCCGGTACCGG GACACCGTTGCGGTA RHA1_ro02955 3127057 - 3126128 - | ABC drug resistance transporter, ATP-binding component RHA1_ro02956 3127770 - 3127066 - | TetR family transcriptional regulator RHA1_ro02957 3128199 - 3127819 - | hypothetical protein RHA1_ro02958 3128952 - 3128338 - | hypothetical protein RHA1_ro02959 3129341 - 3129204 - | DNA-binding protein RHA1_ro02960 3129725 - 3130267 + | hypothetical protein RHA1_ro02961 3130761 - 3130285 - | hypothetical protein RHA1_ro02962 3130776 - 3131264 + | hypothetical protein RHA1_ro02963 3131393 - 3131608 + | glutaminase RHA1_ro02964 3131605 - 3131760 + | hypothetical protein RHA1_ro02965 3131856 - 3132227 + | hypothetical protein RHA1_ro02966 3132460 - 3133863 + | hypothetical protein RHA1_ro02967 3135142 - 3133886 - | carboxylase RHA1_ro02968 3136458 - 3135139 - | hypothetical protein RHA1_ro02969 3137204 - 3136455 - | hypothetical protein TERM 1038 3137148 - 3137132 - G 83 -12.3 -4.09685 | CGGCACCTTCCAAAA TGCCGAG TCC CTCGGCA TCCCAGATCGCCGCG ilvE2 3138121 - 3137201 - | branched-chain-amino-acid transaminase RHA1_ro02971 3139383 - 3138112 - | hypothetical protein RHA1_ro02972 3140606 - 3139380 - | hypothetical protein RHA1_ro02973 3141679 - 3140603 - | (R)-2-hydroxyacid dehydrogenase RHA1_ro02974 3143166 - 3141676 - | muconate cycloisomerase RHA1_ro02975 3144485 - 3143163 - | lysine 2,3-aminomutase RHA1_ro02976 3145492 - 3144482 - | hypothetical protein RHA1_ro02977 3146247 - 3145489 - | hypothetical protein TERM 1039 3145956 - 3145983 + g 72 -13.4 -3.12351 | gap 1, opp_overlap 3145948 3145945 3145947 AGAACAGCGCCAGGT ACGCCGGGCTCGG ATC CC-AGCCCGGCGC TTCGGTGTGCGCCAG RHA1_ro02978 3147292 - 3146381 - | hypothetical protein RHA1_ro02981 3148388 - 3148993 + | hypothetical protein RHA1_ro02982 3149462 - 3149034 - | hypothetical protein RHA1_ro02983 3151411 - 3150071 - | indoleacetamide hydrolase TERM 1040 3150646 - 3150691 + g 72 -14.1 -3.14944 | gap 2, opp_overlap 3150624, overlap 3150657 TCTTCACACCGCTCG CGCGCAGGTCGTCGAGCGCGA GGTGCG TCGC-CTCGGCGACC-GCGGG TTCCATGTCGTCGTA RHA1_ro02984 3152776 - 3151415 - | glycolate oxidase subunit RHA1_ro02985 3154383 - 3152797 - | benzoylformate decarboxylase TERM 1041 3154553 - 3154512 - R 86 -18 -2.52676 | opp_overlap 3154507 TATTCGGTGAACGCA GTCTGCCGGCCGACTGCG GTGTGT CGCGATCGGCCGGCAGAT CAGTGGGGTGCGTGA RHA1_ro02986 3156035 - 3154572 - | benzaldehyde dehydrogenase TERM 1042 3155772 - 3155792 + g 72 -14.7 -2.90571 | overlap 3155759 CAGCCAGCGTTCGAC CTCGGCGCG GTT CGCGTCGAG TGTCATTGCGGCCTT RHA1_ro02987 3157076 - 3156156 - | AraC family transcriptional regulator RHA1_ro02988 3158401 - 3157136 - | L-lactate dehydrogenase (cytochrome) RHA1_ro02989 3159813 - 3158398 - | aromatic acid transporter TERM 1043 3158437 - 3158458 + g 74 -10.9 -3.7732 | gap 1 GATTCCGGGCACCGC TGCGGCCTGT CCG AC-GGCCGCA TTGTTCCTCTGCCGA RHA1_ro02990 3159960 - 3160850 + | LysR family transcriptional regulator RHA1_ro02991 3161506 - 3161237 - | hypothetical protein TERM 1044 3161587 - 3161556 - R 84 -13.8 -3.6806 | AGAGATCGACCCAAA TCGCACCGATACCG ATAC CGATATCGGTTCGA CGTCGATGGGTCGGG TERM 1045 3161694 - 3161655 - R 88 -17.2 -3.09933 | opp_overlap 3161655 CGCGAACTGATCGAA GTGGCGATGCGGACATGC TCGG GCATTCCCGCACCACCAC TTCTGGATGTTCCAT RHA1_ro02992 3162756 - 3161749 - | inositol 2-dehydrogenase RHA1_ro02993 3163723 - 3162824 - | hypothetical protein RHA1_ro02994 3164805 - 3163720 - | oxidoreductase TERM 1046 3163886 - 3163911 + g 76 -7.7 -4.25681 | gap 1 TGGAAGTTACTGATG TTCTC-GAGTTC AGG GAGCTCGGAGAA TTTGTTCGCTTCGGT RHA1_ro02995 3166603 - 3164996 - | IclR family transcriptional regulator TERM 1047 3166935 - 3166969 + G 79 -10.8 -3.97043 | gap 1 ACTCACCTCGCTACC GGACGAGCTCGA-TC AGCTCG GACTCGAGCGCGTCC TTGTTCTCTGTTCAC RHA1_ro02996 3166861 - 3167937 + | maleylacetate reductase RHA1_ro02997 3167995 - 3168951 + | catechol 1,2-dioxygenase RHA1_ro02998 3169051 - 3170487 + | major facilitator superfamily sugar transporter RHA1_ro02999 3170525 - 3170890 + | universal stress protein RHA1_ro03000 3170937 - 3171371 + | hypothetical protein RHA1_ro03001 3171624 - 3172856 + | transposase RHA1_ro03002 3173537 - 3175417 + | transposase RHA1_ro03003 3175514 - 3176080 + | hypothetical protein RHA1_ro03004 3176490 - 3176233 - | hypothetical protein TERM 1048 3176918 - 3176894 - g 72 -9.1 -3.97139 | CAACGTCAACAACAA CTGCGCCACCG GCT CGTCGGCGCTG TACCTGGCCCGCCAG RHA1_ro03005 3176652 - 3177839 + | lipid-transfer protein TERM 1049 3177901 - 3177914 + G 81 -2.3 -5.0133 | CAAGTGAACGTCGAG CGTGG GCGT CTGCG TTTTTTCGCGCAGTC RHA1_ro03006 3177841 - 3178296 + | hypothetical protein RHA1_ro03007 3178293 - 3178673 + | MaoC-like dehydratase RHA1_ro03008 3178705 - 3179508 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro03009 3179531 - 3181078 + | AMP-binding acyl-CoA synthetase TERM 1050 3181233 - 3181284 + G 100 -22.4 -3.53012 | gap 1, opp_overlap 3181233 ATCACGGCGTGAACA TGGAGG-ACATCGCTTCCGCGGTGG GCA TCACCGCGGGAGCGCTGTACCGCCA TTTCCCGAACAAGCA TERM 1051 3181284 - 3181233 - g 87 -19.5 -3.0263 | gap 1, opp_overlap 3181233 ATCACGGCGTGAACA TGGAGG-ACATCGCTTCCGCGGTG GGCAT CACCGCGGGAGCGCTGTACCGCCA TTTCCCGAACAAGCA RHA1_ro03010 3181094 - 3182290 + | transcriptional regulator RHA1_ro03011 3183898 - 3182291 - | sodium symporter ABC transporter RHA1_ro03012 3184892 - 3184002 - | hypothetical protein RHA1_ro03013 3186712 - 3184889 - | gamma-aminobutyrate APC transporter RHA1_ro03014 3187017 - 3187271 + | hypothetical protein RHA1_ro03015 3189211 - 3187535 - | hypothetical protein RHA1_ro03016 3189255 - 3189926 + | GntR family transcriptional regulator RHA1_ro03017 3191268 - 3189898 - | major facilitator transporter TERM 1052 3191452 - 3191418 - H 86 -9.4 -4.54301 | gap 2, overlap 3191420 3191444 CAAAAAAGTAACAAA TC-CGCC-CTGGTCCC GACAG GGAACCAGAGGCGCGA AGTCAGGAGCCTCGA RHA1_ro03018 3191471 - 3192160 + | hypothetical protein RHA1_ro03019 3195918 - 3192811 - | protein kinase/ LuxR family transcriptional regulator RHA1_ro03020 3196284 - 3196712 + | MarR family transcriptional regulator TERM 1053 3198122 - 3198069 - g 87 -22.6 -2.71011 | ACTCCTCGTCAATCA CGTGATG-TCGCGTCCGCCGACCCCG CTGT CGGAGCCGGCGGACGCGCGCATCA-G TGGGGGCTAGGCGCC RHA1_ro03021 3196696 - 3198132 + | major facilitator superfamily multidrug resistance protein RHA1_ro03022 3199325 - 3198129 - | acetyl-CoA acetyltransferase RHA1_ro03023 3199796 - 3199344 - | nodulation protein N RHA1_ro03024 3201066 - 3199843 - | acetyl-CoA acetyltransferase RHA1_ro03025 3202315 - 3201071 - | acyl-CoA dehydrogenase RHA1_ro03026 3202472 - 3202822 + | 4-coumarate--CoA ligase RHA1_ro03027 3202845 - 3204035 + | acyl-CoA dehydrogenase fabG 3204050 - 3204793 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1054 3204803 - 3204774 - Tf 70 -14.3 -2.52464 | CCGTTCTCGAAGTCA CCGGCGGACGTCA CATC TGACATCCGGCGG ATCGACGGGTCGTAC RHA1_ro03030 3206537 - 3205644 - | LysR family transcriptional regulator RHA1_ro03029 3204835 - 3205704 + | LysR family transcriptional regulator RHA1_ro03031 3206665 - 3207393 + | GntR family transcriptional regulator RHA1_ro03032 3208438 - 3207728 - | TetR family transcriptional regulator TERM 1055 3208528 - 3208508 - H 86 -12.7 -3.92373 | opp_overlap 3208507 CACGCTACCCACAAA GTTGTCAAC AGC GTTGACAAC ATCGTTGCGGCGGAG RHA1_ro03033 3208584 - 3209975 + | amino acid transporter RHA1_ro03034 3209972 - 3211117 + | 6-aminohexanoate-dimer hydrolase RHA1_ro03035 3211799 - 3211152 - | hypothetical protein RHA1_ro03036 3212335 - 3212027 - | hypothetical protein RHA1_ro03037 3212538 - 3213602 + | hypothetical protein RHA1_ro03038 3214480 - 3213575 - | hypothetical protein RHA1_ro03039 3216896 - 3214521 - | formate dehydrogenase RHA1_ro03040 3218440 - 3216911 - | hypothetical protein hpd1 3219768 - 3218563 - | 4-hydroxyphenylpyruvate dioxygenase RHA1_ro03042 3219949 - 3220476 + | AsnC family transcriptional regulator gdhA2 3220540 - 3221910 + | glutamate dehydrogenase (NAD(P)+) RHA1_ro03044 3221927 - 3223345 + | gamma-aminobutyrate APC transporter TERM 1056 3223397 - 3223351 - f 100 -28.9 -2.62184 | overlap 3223353 CGTCGGCTGAGACGA CACCGCGGTCTCACGGATGTC GAGGG GTCATCCGTGAGACCGCGGCG GTCTCCCGCTGAGCG TERM 1057 3223395 - 3223353 - f 100 -27.9 -2.85351 | overlap 3223351 TCGGCTGAGACGACA CCGCGGTCTCACGGATGTC GAGGG GTCATCCGTGAGACCGCGG CGGTCTCCCGCTGAG RHA1_ro03045 3223477 - 3224646 + | NADH-dependent flavin oxidoreductase RHA1_ro03046 3225135 - 3224647 - | hypothetical protein RHA1_ro03047 3225425 - 3225132 - | ArsR family transcriptional regulator TERM 1058 3225610 - 3225594 - g 70 -12.3 -3.26531 | overlap 3225592 CGACGAACACGAAGA GGCGATC CGC GATCGCC CGCACAGCCGCGTCT RHA1_ro03048 3225565 - 3226251 + | TetR family transcriptional regulator TERM 1059 3226279 - 3226297 + F 91 -14.6 -3.91434 | CCCTCCACGCGCCTT CCGCTCCT GAT AGGAGCGG TTTGTCGCGTGCTTT shiA2 3226465 - 3227796 + | shikimate MFS family protein RHA1_ro03050 3227840 - 3228931 + | oxidoreductase RHA1_ro03051 3228975 - 3229442 + | 3-dehydroquinate dehydratase RHA1_ro03052 3229439 - 3230248 + | hypothetical protein TERM 1060 3230631 - 3230673 + G 74 -11.8 -3.75738 | CAGCATCCTGCGCGG GGTGGGGATCGGGCTGGGCG CCG CGATCAAACCGACCCCCGCC TTCTTCGTCGTCGTG RHA1_ro03053 3230377 - 3230922 + | hypothetical protein RHA1_ro03054 3230900 - 3233206 + | protein kinase TERM 1061 3233273 - 3233230 - T 93 -13.8 -4.14627 | opp_overlap 3233224, overlap 3233231 GGCGCAGATAAAGAA GGCCCCTGACGCTGCCGG GTCGGGGT CCGACAGCGCCATGGGCT CACTGGGTATTTCTC TERM 1062 3233272 - 3233231 - T 88 -17.3 -3.08294 | opp_overlap 3233224, overlap 3233230 GCGCAGATAAAGAAG GCCCCTGACGCTGCCGG GTCGGGGT CCGACAGCGCCATGGGC TCACTGGGTATTTCT RHA1_ro03055 3233932 - 3233306 - | TetR family transcriptional regulator RHA1_ro03056 3233961 - 3235304 + | hypothetical protein RHA1_ro03057 3235795 - 3235289 - | hypothetical protein TERM 1063 3235999 - 3236018 + r 72 -6.4 -4.25104 | gap 1, overlap 3235990 TCGTCTCAGTCAGGT CGGTGACCG TGG CGGTT-CCG TTTTCATGACACGGA RHA1_ro03058 3237110 - 3236022 - | acyl-CoA dehydrogenase RHA1_ro03059 3238288 - 3237110 - | acyl-CoA dehydrogenase TERM 1064 3237623 - 3237610 - G 76 -8.1 -4.25283 | AGTCCGCCACGAAAA CGTCC TCGA GGACG ACCTCGTTGAAGTGG RHA1_ro03060 3238506 - 3239294 + | IclR family transcriptional regulator RHA1_ro03061 3239502 - 3239747 + | hypothetical protein RHA1_ro03062 3240479 - 3240204 - | hypothetical protein TERM 1065 3242256 - 3242244 - g 81 -7.7 -4.63218 | opp_overlap 3242243 TTCCGGGCAAGAAAA TGCAG ATG CTGCA GTATCTAAACGGCGT RHA1_ro03063 3240692 - 3242341 + | cyclohexanone monooxygenase RHA1_ro03064 3242338 - 3242634 + | hypothetical protein RHA1_ro03065 3242699 - 3243568 + | senescence marker protein-30 TERM 1066 3244108 - 3244065 - g 77 -15.5 -3.14931 | gap 3, opp_overlap 3244101 TCCACCCCGCACGAA CGG-GC-CGAGACTATGCGGCG GTT CGCCG-ATAGCCTCGAGCGCCG AGGAGAATCCACCGC RHA1_ro03066 3243849 - 3245297 + | aldehyde dehydrogenase RHA1_ro03067 3245412 - 3246665 + | formyl CoA transferase RHA1_ro03068 3246969 - 3246817 - | hypothetical protein RHA1_ro03069 3247779 - 3247333 - | hypothetical protein TERM 1067 3247865 - 3247816 - H 100 -26 -3.14132 | gap 1 GGCGCCCCTGATCAA CTGGA-GTGGTGCCCTCCGCTCA CCTGC TGAGCGGAGGGCACCACGTCGAG AAACTCGTCGATGCC RHA1_ro03070 3248042 - 3248842 + | enoyl-CoA hydratase TERM 1068 3249048 - 3249089 + T 77 -15.2 -2.88861 | gap 2 GTCCTGCAAGCCCAT GAC--CTGCGGCCGCCGTGG GGGC TCACGGCGGCCGCAGCCGGC TGTGTGGCGGTGGTC RHA1_ro03071 3249470 - 3249111 - | hypothetical protein RHA1_ro03072 3250543 - 3249500 - | surface antigen protein RHA1_ro03073 3250749 - 3251258 + | chromate resistance protein RHA1_ro03074 3251255 - 3251686 + | chromate resistance protein RHA1_ro03075 3251744 - 3253147 + | chromate transporter RHA1_ro03076 3254778 - 3253393 - | cytochrome P450 CYP136 RHA1_ro03077 3254846 - 3255466 + | TetR family transcriptional regulator TERM 1069 3255782 - 3255805 + T 70 -6 -4.23892 | gap 1 AGGGCCAGTGCTTGG GGCGCACTC GCCGACG GAG-GCGCC TTTTCACTCCTTCAG RHA1_ro03078 3257053 - 3255809 - | hypothetical protein TERM 1070 3257532 - 3257510 - g 74 -13.4 -3.29144 | CTACTTCGCGGACAA CGCCGGCAAG TTT CTCGCCGACG AGCGGGTGAAACCGC RHA1_ro03079 3257187 - 3258740 + | aldehyde dehydrogenase (NAD+) TERM 1071 3259264 - 3259312 + G 71 -9.6 -3.72576 | overlap 3259267 TCACGGACGCGGCCC GGGTGGAGCACCGCGGAA CGGGAATCGAGTT TTCCGCGGTGCTCCCGTC TTTCGTCAACACCGA RHA1_ro03080 3258765 - 3259592 + | short chain dehydrogenase RHA1_ro03081 3261451 - 3260111 - | dehydrogenase RHA1_ro03082 3261566 - 3261892 + | hypothetical protein RHA1_ro03083 3262580 - 3262071 - | MerR family transcriptional regulator TERM 1072 3262487 - 3262453 - G 77 -17.1 -2.52676 | gap 1, opp_overlap 3262449 3262448 CACCTTTCCAACGGA CAGGGCCCCCGGCGCC GTGA GGCACCGGGGG-CCGG AGCGGGTTTCACTTC TERM 1073 3262737 - 3262771 + r 76 -5.7 -4.53303 | overlap 3262737 3262738 TGCAGATATTCTGGA G-CGGTTGACCGGGGAT TTC ACCTCCGG-CAGCCGAC TTTTCTGTCCCCGTC RHA1_ro03084 3263208 - 3262876 - | cytochrome P450 RHA1_ro03085 3263258 - 3263590 + | hypothetical protein TERM 1074 3264341 - 3264361 + G 73 -12.5 -3.46509 | opp_overlap 3264325, overlap 3264335 GCAGCGTTCGAACGC GCCGTCCGC CTC GCAGACGGC TTCATCTTCTTCGGA RHA1_ro03086 3263723 - 3264637 + | monooxygenase RHA1_ro03087 3264939 - 3265454 + | hypothetical protein TERM 1075 3265733 - 3265676 - g 70 -8.9 -3.95555 | gap 1, overlap 3265679 3265695 3265725 3265728 ACAATCATCGAGAAA CTACGGTGGGGGCAGATGACCGTGGCCG AAG CGGCCGCAG-CAGCGAACACCACCGTCG CGACAGTCGAGGCGG TERM 1076 3265925 - 3265881 - g 74 -16.4 -2.70354 | gap 1, opp_overlap 3265879 3265921, overlap 3265866 3265877 3265905 3265907 GCGTCCAGAAACTCA GTCAGGGCGCCCGGGCCG-TC AATA GAGCCGCCCAGGCGGCCCGAC CCTTCGGTGCTGTGA RHA1_ro03088 3265487 - 3266929 + | proline rich protein TERM 1077 3266951 - 3266989 + F 100 -17.4 -4.07306 | overlap 3266955 AACAGGCCCGATGTG CATATCTACCGGCCCCGC TCG GAGGGGCCGGTAGATCAG TTTCTGGTTCAGTCT TERM 1078 3266955 - 3266985 + F 100 -21.2 -2.7361 | overlap 3266951 GGCCCGATGTGCATA TCTACCGGCCCCGC TCG GAGGGGCCGGTAGA TCAGTTTCTGGTTCA RHA1_ro03089 3267258 - 3267623 + | transposase RHA1_ro03090 3267656 - 3268807 + | transposase RHA1_ro03092 3271881 - 3270868 - | transcriptional regulator RHA1_ro03091 3268854 - 3270941 + | transposase RHA1_ro03093 3271973 - 3273232 + | acyl-CoA dehydrogenase RHA1_ro03094 3273229 - 3273993 + | short chain dehydrogenase RHA1_ro03095 3273990 - 3275159 + | hypothetical protein RHA1_ro03096 3275958 - 3275350 - | TetR family transcriptional regulator RHA1_ro03097 3277439 - 3276330 - | hypothetical protein RHA1_ro03098 3279049 - 3277676 - | hypothetical protein TERM 1079 3278073 - 3278050 - G 76 -7.4 -4.28375 | gap 1, overlap 3278041 3278051 CGAACAGAGCGAAAA CGGTCAGC-CC ACC GACGCCGACCG CGGCGACGGTAGCGG TERM 1080 3278614 - 3278593 - G 74 -13.7 -3.36492 | TGTCCAAGTGGACAA CCGGATGCG TCGG CGCACCCGG GCCGGGACGGGTCAG RHA1_ro03099 3280492 - 3279539 - | esterase/ lipase TERM 1081 3280651 - 3280694 + r 76 -13.9 -3.15544 | gap 1, opp_overlap 3280649 3280648 TCTTCGCGAGAAGTC CTG-TGCCGTCGGTGGTCGG TGCAT CCTGCCGTCGACGGCACCAG TTCGTGGGGGTCAGG RHA1_ro03100 3281706 - 3280705 - | NADPH:quinone reductase TERM 1082 3281588 - 3281636 + g 70 -12.4 -3.3056 | gap 1, overlap 3281586 3281584 CCGGCCGCGGCGACC TCGAGCAGGACCTCGCCGGCGGC GGGG GTCGGT-GTGGGGACCTGCTCGA TGTTCATGTTCTTGT gabD2 3283466 - 3281874 - | succinic semialdehyde dehydrogenase RHA1_ro03102 3284449 - 3283517 - | hypothetical protein RHA1_ro03103 3285111 - 3284500 - | TetR family transcriptional regulator TERM 1083 3285136 - 3285168 + H 71 -14.3 -2.69596 | overlap 3285135 3285131 CTCCTCGGTTGTTGA CGCCGCTTACATT CCAGCTT AGTGTAAGCGGCG CTTACTTGCTTTCGG TERM 1084 3285653 - 3285605 - g 75 -9.6 -4.07568 | GGGGCCGTCCGAAAA GGCGGT-GGACGTCGGCAAGCACT CGA AGAACTT-CGGTCGTCCTACCGCC ATGACACCGCAGCAG TERM 1085 3286041 - 3286024 - g 71 -9.8 -3.76224 | opp_overlap 3286030, overlap 3286025 GCGGTAGCTACGAAA GCCCGG CGATGT CCGGGC GCCCGGTGGACGGGC RHA1_ro03104 3285219 - 3286496 + | oxidoreductase RHA1_ro03105 3286690 - 3287415 + | transcriptional regulator RHA1_ro03106 3288971 - 3287637 - | shikimate MFS family protein TERM 1086 3289764 - 3289809 + G 83 -19.7 -2.73364 | gap 1 GTCGTAGCCTCTGCC GTGCC-GGCGCAGGCGCTGGCC CCG GGCCAGAGCTTGCGCGAGGCGC TGATTACGCTGCACA RHA1_ro03107 3289119 - 3290417 + | transcriptional regulator RHA1_ro03108 3290584 - 3291519 + | resolvase, N-terminal RHA1_ro03109 3291516 - 3291962 + | hypothetical protein TERM 1087 3292317 - 3292364 + T 85 -11.9 -4.19817 | gap 1, overlap 3292319 CACCCTCTACGCTGA CCGGGAGCGC-ATCCCCGGACG TAGCC TGTCCGGGGGGCGCGCTCCCTA TTTTGCGTCAGTCGA TERM 1088 3292319 - 3292362 + T 100 -18.9 -3.6993 | gap 1, overlap 3292317 CCCTCTACGCTGACC GGGAGCGC-ATCCCCGGACG TAGCC TGTCCGGGGGGCGCGCTCCC TATTTTGCGTCAGTC RHA1_ro03110 3293361 - 3292372 - | hypothetical protein TERM 1089 3292743 - 3292690 - G 77 -11.5 -3.87815 | gap 1 GGCGAGTCCGAGAAA CGCGTCGCGCTGCATCGGTCCGCTCG CGG CGACCAGTCCGACGCGG-GCGGCGAG ATCGCCGCTGGGAAT TERM 1090 3293391 - 3293409 + H 70 -5.8 -4.22535 | overlap 3293387 3293392 GAGAAGTAGGTGAGC CGGACCGG AGT CCCGCCCG TTCTTTTGCCGTTCT TERM 1091 3293759 - 3293727 - H 100 -27.9 -2.62184 | overlap 3293729 CGTCCCTGCACATGA GATGGCCCCGAACCG TGG CGGTTCGGGGCCATC TGGCGCCGCGTCAGG TERM 1092 3293757 - 3293729 - H 100 -24.7 -2.85351 | overlap 3293727 TCCCTGCACATGAGA TGGCCCCGAACCG TGG CGGTTCGGGGCCA TCTGGCGCCGCGTCA RHA1_ro03111 3293989 - 3295227 + | hypothetical protein RHA1_ro03112 3295919 - 3295341 - | resolvase RHA1_ro03113 3296677 - 3295916 - | cell filamentation protein RHA1_ro03114 3297045 - 3297293 + | hypothetical protein RHA1_ro03115 3298825 - 3297863 - | hypothetical protein RHA1_ro03116 3300258 - 3298828 - | hypothetical protein TERM 1093 3299222 - 3299268 + gH 87 -14.5 -3.59979 | gap 2, overlap 3299224 TCGCCGTGATTGGTG AAGGCCGGGCCGTCGACGTACTT TTG GAGGAC--CGACGGCCCGGCCTC TTTGGCCTGCAGGAA TERM 1094 3299224 - 3299266 + gH 90 -17.1 -3.38046 | gap 2, overlap 3299222 GCCGTGATTGGTGAA GGCCGGGCCGTCGACGTACTT TTG GAGGAC--CGACGGCCCGGCC TCTTTGGCCTGCAGG RHA1_ro03117 3300240 - 3300563 + | hypothetical protein RHA1_ro03118 3301335 - 3300649 - | tyrosine recombinase RHA1_ro03119 3303526 - 3302156 - | hypothetical protein RHA1_ro03120 3303668 - 3304258 + | lipoprotein RHA1_ro03121 3304279 - 3304929 + | ABC lipoprotein transporter, ATP-binding component lolD 3304929 - 3305642 + | ABC lipoprotein transporter, ATP-binding component RHA1_ro03123 3305639 - 3308293 + | lipoprotein ABC transporter permease RHA1_ro03124 3308571 - 3308329 - | hypothetical protein TERM 1095 3308873 - 3308836 - g 82 -11.3 -4.11216 | gap 1, overlap 3308819 3308865 GGGGGAGGCGCAAAA CGGCCCCCG-CCACCG ATGGGGG CAGTGAACGGGGACCG ACGTGCCGCCGTATC RHA1_ro03125 3308650 - 3309324 + | hypothetical protein RHA1_ro03126 3309318 - 3309683 + | hypothetical protein TERM 1096 3309754 - 3309791 + T 95 -15.5 -4.11281 | opp_overlap 3309757, overlap 3309756 3309757 GGCCGCCCCACACAC AAACGGGCCGACGCGAC CTCA GTCGCGTCGGCCGGCTG TTTGTCGTTCTCGTG TERM 1097 3309756 - 3309789 + T 93 -18.1 -3.64357 | opp_overlap 3309757, overlap 3309754 3309757 CCGCCCCACACACAA ACGGGCCGACGCGAC CTCA GTCGCGTCGGCCGGC TGTTTGTCGTTCTCG TERM 1098 3309757 - 3309788 + T 100 -21.6 -2.77891 | opp_overlap 3309757, overlap 3309756 3309754 CGCCCCACACACAAA CGGGCCGACGCGAC CTCA GTCGCGTCGGCCGG CTGTTTGTCGTTCTC TERM 1099 3309788 - 3309757 - T 100 -21.6 -4.12532 | opp_overlap 3309757 3309756 3309754 CGCCCCACACACAAA CGGGCCGACGCGAC CTCA GTCGCGTCGGCCGG CTGTTTGTCGTTCTC RHA1_ro03127 3310517 - 3309816 - | MspA porin RHA1_ro03128 3310940 - 3311875 + | deacetylase RHA1_ro03129 3313643 - 3312030 - | esterase TERM 1100 3312282 - 3312320 + g 80 -15.9 -3.21099 | opp_overlap 3312282 ATTGACCCGAGTGAA CGCGGCCTGGTTGCCGC CGAAC GCGGCGTCCAGGGTGCG TTGATGATCACCGAG RHA1_ro03130 3313674 - 3314054 + | hypothetical protein RHA1_ro03131 3314219 - 3314479 + | hypothetical protein TERM 1101 3314683 - 3314652 - g 77 -3.4 -4.72272 | opp_overlap 3314658 3314679 GGTGGTGATGAAAAA CCTGCTGCCGGACG ACCT CGCCCGGGTGTTGG GCGATCGATCGACCA RHA1_ro03132 3314527 - 3315213 + | hypothetical protein RHA1_ro03133 3316306 - 3315326 - | hypothetical protein RHA1_ro03134 3317404 - 3316472 - | hypothetical protein RHA1_ro03135 3317818 - 3317441 - | hypothetical protein RHA1_ro03136 3318031 - 3319161 + | hypothetical protein RHA1_ro03137 3319158 - 3319862 + | hypothetical protein RHA1_ro03138 3319962 - 3320759 + | hypothetical protein RHA1_ro03139 3321878 - 3320973 - | hydrolase TERM 1102 3321941 - 3321955 + H 77 -12.8 -3.41051 | opp_overlap 3321923 CGACCCGTCCGGTGT CCGCCG CTG CGGCGG TTGTCCTCGGCGTCC RHA1_ro03140 3321989 - 3323407 + | sensor kinase, two-component system RHA1_ro03141 3324065 - 3323358 - | transcriptional regulator RHA1_ro03142 3325394 - 3324354 - | ABC Fe(3+) transporter, ATP-binding component RHA1_ro03143 3326956 - 3325391 - | ABC Fe(3+)-transporter, permease protein SfuB RHA1_ro03144 3328017 - 3326977 - | ABC Fe(3+) transporter, substrate binding protein SfuA RHA1_ro03145 3328364 - 3329101 + | hypothetical protein TERM 1103 3331421 - 3331385 - g 74 -12.3 -3.615 | overlap 3331383 ATCGCGAGACAAACA TCGGCGGTGACGTCG GCTACAT CGAGGTCACCGCGGA CCGGCTCCGGCCGGG TERM 1104 3331578 - 3331559 - g 82 -9.2 -4.41348 | CGGTGGCCAAACAAA CACTCCCG ACAC CGGGTGTG CCGTTGGCCGAGCGG RHA1_ro03146 3329125 - 3333645 + | metal cation transporting ATPase RHA1_ro03147 3333852 - 3334124 + | hypothetical protein RHA1_ro03148 3334351 - 3334878 + | hypothetical protein RHA1_ro03149 3335035 - 3336486 + | hypothetical protein RHA1_ro03150 3336615 - 3336863 + | hypothetical protein RHA1_ro03151 3337039 - 3337482 + | hypothetical protein RHA1_ro03152 3337957 - 3338217 + | hypothetical protein RHA1_ro03153 3338612 - 3338235 - | hypothetical protein RHA1_ro03154 3339236 - 3338643 - | undecaprenol kinase RHA1_ro03155 3339367 - 3339717 + | hypothetical protein RHA1_ro03156 3339781 - 3340632 + | hypothetical protein RHA1_ro03157 3340705 - 3340815 + | hypothetical protein RHA1_ro03158 3341421 - 3341134 - | hypothetical protein RHA1_ro03159 3341988 - 3341452 - | resolvase RHA1_ro03160 3343584 - 3342028 - | transposase RHA1_ro03161 3344301 - 3343765 - | hypothetical protein RHA1_ro03162 3345196 - 3344399 - | hypothetical protein RHA1_ro03163 3346476 - 3345193 - | hypothetical protein TERM 1105 3346493 - 3346459 - G 100 -26.6 -4.34737 | opp_overlap 3346459 3346463 3346464, overlap 3346464 TGAGCAATCAATAAA CACAAGGGGCGGAGCC ATG AGCTCCGCCCCTTGTG TTGGTGCGGAGCTGT TERM 1106 3346459 - 3346493 + g 100 -25.9 -3.14683 | opp_overlap 3346459 3346464, overlap 3346463 3346464 TGAGCAATCAATAAA CACAAGGGGCGGAGC CATGA GCTCCGCCCCTTGTG TTGGTGCGGAGCTGT TERM 1107 3346463 - 3346521 + g 83 -19.7 -2.75992 | opp_overlap 3346459 3346464, overlap 3346459 3346464 3346515 CAATCAATAAACACA AGGGGCGGA-GCCATGAGCTCCGCCCC TTGTGTT GGTGCGGAGCT-GTGGCCTCCGCCCCC TGGTGTTGCCTACGC TERM 1108 3346520 - 3346464 - G 100 -21 -3.99352 | opp_overlap 3346459 3346463 3346464 3346515, overlap 3346459 AATCAATAAACACAA GGGGCGGAG-CCATGAGCTCCGCCCC TTGTGTT GGTGCGGAGCTG-TGGCCTCCGCCCC CTGGTGTTGCCTACG TERM 1109 3346464 - 3346488 + g 95 -18.6 -3.71284 | opp_overlap 3346459 3346464, overlap 3346459 3346463 AATCAATAAACACAA GGGGCGGAGC CATGA GCTCCGCCCC TTGTGTTGGTGCGGA RHA1_ro03164 3347185 - 3346994 - | hypothetical protein RHA1_ro03165 3347787 - 3347182 - | replicative DNA helicase RHA1_ro03166 3348859 - 3347924 - | resolvase, N-terminal RHA1_ro03167 3350466 - 3349255 - | transcriptional regulator TERM 1110 3351120 - 3351151 + G 75 -5 -4.614 | gap 1, overlap 3351125 ACCGTGCAGATGGAC CCCCTCGACCTCGAG GAC CTGGAGG-CGTTGGG TTTTCTGTCCTTCGC RHA1_ro03168 3350853 - 3351932 + | phenylalanine dehydrogenase pheP 3351942 - 3353360 + | phenylalanine-specific permease hpd2 3353475 - 3354689 + | 4-hydroxyphenylpyruvate dioxygenase TERM 1111 3354742 - 3354716 - f 81 -13 -3.68619 | GCCAATCCACCGAAA GTGCCGATCAGC TCG GACGATCGGCAC CCGGTCATCCACCCG RHA1_ro03171 3355105 - 3355479 + | hypothetical protein RHA1_ro03172 3356343 - 3355615 - | hypothetical protein RHA1_ro03173 3356554 - 3356877 + | hypothetical protein TERM 1112 3356995 - 3357020 + G 83 -5.3 -4.82901 | TGGACCTGGTCACTC TCGTTCTCGCG TCAC CACGCGGACGA TTTTTCTGCGCGAAC RHA1_ro03174 3356979 - 3358001 + | hypothetical protein RHA1_ro03175 3360253 - 3358112 - | hypothetical protein RHA1_ro03176 3360642 - 3360316 - | hypothetical protein RHA1_ro03177 3361511 - 3360639 - | tyrosine recombinase RHA1_ro03178 3361751 - 3361512 - | hypothetical protein RHA1_ro03179 3362031 - 3361840 - | hypothetical protein RHA1_ro03180 3362588 - 3362028 - | replicative DNA helicase RHA1_ro03181 3362926 - 3362666 - | glutaredoxin-like protein TERM 1113 3362828 - 3362855 + g 81 -3.4 -4.82901 | gap 1, overlap 3362828 GGAGAGGTTCTCGGT GAGG-TCGACGAT CGA ATAGTCGATCCCC TTTTTGTCGAGGGCG TERM 1114 3363297 - 3363284 - R 74 -2.3 -4.81359 | opp_overlap 3363284 AACTGAAAGAGAAAA GGGAA AAGG TGCCC GATTTGTTTTTCTTT TERM 1115 3363492 - 3363534 + r 100 -28.5 -3.767 | overlap 3363484 3363493 GCGGTAACCCGGCTG GCCCCTGGCCGGGGCGAGG TGGGT TCTCGCCCCGGCCAGGGGG TTTGGTCAGTCGATC TERM 1116 3363493 - 3363533 + r 100 -32 -2.85699 | overlap 3363484 3363492 CGGTAACCCGGCTGG CCCCTGGCCGGGGCGAGG TGGGT TCTCGCCCCGGCCAGGGG GTTTGGTCAGTCGAT RHA1_ro03182 3364526 - 3363540 - | chromosome partitioning protein-like protein TERM 1117 3364756 - 3364778 + r 75 -14.8 -2.72049 | opp_overlap 3364742 3364752 3364751 AGAACCCAAATGGGG GTGCCGCGGC ATA GCCGCGGCAG TGCTTGGAAACTATG RHA1_ro03183 3366398 - 3365292 - | hypothetical protein RHA1_ro03184 3367596 - 3366679 - | hypothetical protein RHA1_ro03185 3368136 - 3367864 - | hypothetical protein TERM 1118 3368424 - 3368390 - g 70 -12.8 -3.26471 | opp_overlap 3368411 TGACGCGCAGAGCAA CGCCGAGACCGGCA ACGCCAA TGCCGGTGACGGCG GCGCCGGCGCCCCCG RHA1_ro03186 3368202 - 3368732 + | glycine rich protein RHA1_ro03187 3369274 - 3369585 + | hypothetical protein RHA1_ro03188 3371818 - 3369818 - | protein kinase RHA1_ro03189 3372718 - 3371831 - | hypothetical protein TERM 1119 3372054 - 3372036 - G 81 -9.5 -4.2704 | overlap 3372037 CCGAGGATGAAGAAA CCGACGG CGAAT CCGCCGG CGAGAAGCAGCCACC RHA1_ro03190 3374349 - 3372721 - | proline rich protein RHA1_ro03191 3374493 - 3375113 + | forkhead domain-containing protein RHA1_ro03192 3375878 - 3375357 - | hypothetical protein RHA1_ro03193 3375980 - 3376363 + | hypothetical protein RHA1_ro03194 3376747 - 3376499 - | hypothetical protein RHA1_ro03195 3378282 - 3377047 - | hypothetical protein TERM 1120 3378186 - 3378175 - G 90 -7.2 -5.08015 | overlap 3378177 3378183 AAGGGAAAAAACAAA GGCG ACAA CGCC GTCCGAGAACGCCGG RHA1_ro03196 3379430 - 3378282 - | hypothetical protein TERM 1121 3379224 - 3379209 - G 75 -9 -4.1399 | GCAGGCACACAGAAA CCTCAC CAGC GTGAGG AACAGAACAACCACG TERM 1122 3379371 - 3379385 + g 70 -12.8 -3.27475 | overlap 3379369 3379369 GCTTCGCCCACACCC GCCGCC CTC GGCGGC TCTTGTCGTCCGGCA RHA1_ro03197 3380690 - 3379686 - | endopeptidase RHA1_ro03198 3382013 - 3381753 - | hypothetical protein TERM 1123 3382671 - 3382650 - g 70 -12.3 -3.35679 | gap 1 CGTCGCCACCGACAA GGGTCG-CCG CAC CGGCCGACCC AGCGTGGTCACCGAC RHA1_ro03199 3382252 - 3383190 + | resolvase, N-terminal RHA1_ro03200 3385284 - 3383194 - | transposase B RHA1_ro03201 3386405 - 3385281 - | transposase A TERM 1124 3387069 - 3387113 + G 77 -11.4 -3.85698 | gap 1, overlap 3387037 3387070 GACCCGGTCGGTCGG ATCGATCCGCGACTGGCGAGG TTCT TC-CGTCGGTCGCGGATCGCG TTTCTCGCCGAGGGA TERM 1125 3387070 - 3387112 + G 72 -14.9 -2.91276 | gap 1, overlap 3387037 3387069 ACCCGGTCGGTCGGA TCGATCCGCGACTGGCGAGG TTCT TC-CGTCGGTCGCGGATCGC GTTTCTCGCCGAGGG RHA1_ro03202 3386928 - 3388391 + | hypothetical protein TERM 1126 3388503 - 3388513 + G 75 -8.2 -4.19506 | GTCCGAAAACGGGAT CGCC GAA GGCG TTTTCGACTTCACCT RHA1_ro03203 3388393 - 3390159 + | hypothetical protein TERM 1127 3390791 - 3390758 - g 72 -5.2 -4.41494 | gap 1, opp_overlap 3390765 3390777 CACCGCCAACGAAAA CGGCA-CACCCCCGA TCCAC CCGGCGGTGATGTCG CCGCTGCTGATCTGG RHA1_ro03204 3390156 - 3392309 + | hypothetical protein RHA1_ro03205 3392299 - 3392742 + | hypothetical protein RHA1_ro03206 3394130 - 3393018 - | dehydrogenase RHA1_ro03207 3394775 - 3394509 - | hypothetical protein RHA1_ro03208 3395719 - 3394841 - | polysaccharide deacetylase ansA 3396724 - 3395723 - | asparaginase RHA1_ro03210 3396876 - 3397916 + | LacI family transcription regulator TERM 1128 3397955 - 3397934 - T 74 -10.1 -3.69354 | overlap 3397928 GCGGAGAACCTCAAA TCGGCGCGA CCAG TCTCGCCGA CTAGAGCGGTCTGAG RHA1_ro03211 3399359 - 3397956 - | amidase RHA1_ro03212 3400252 - 3399551 - | cyclase RHA1_ro03213 3401093 - 3400344 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro03214 3401923 - 3401123 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1129 3402028 - 3402086 + r 73 -11.8 -3.41527 | gap 3, overlap 3402023 3402028 TTCTTTAGGCCGTGA CCG-CGTC-C-GTGTCGTCGACGTCGACG TCGA CGTCGTCGTCGACGTCACCGTGGTGGTGG TTCTGATCGACCTTG TERM 1130 3402028 - 3402083 + r 93 -19.6 -2.86271 | overlap 3402023 3402028 TTCTTTAGGCCGTGA CCGCGTCCGTGTCGTCGACGTCGACG TCGA CGTCGTCGTCGACGTCACCGTGGTGG TGGTTCTGATCGACC RHA1_ro03215 3403543 - 3402017 - | aromatic acid transporter RHA1_ro03216 3403722 - 3403919 + | hypothetical protein RHA1_ro03217 3403928 - 3404374 + | hypothetical protein RHA1_ro03218 3404380 - 3404751 + | WhiB family transcriptional regulator RHA1_ro03219 3404777 - 3405169 + | hypothetical protein TERM 1131 3406172 - 3406130 - g 95 -23.5 -2.78463 | AGTCCGCCGATGAGA TCGCTCCCCTGCTCCAGCG GGTGG CGCTGGAGCTGGGGACCGA GTTCGACAAGGATGC RHA1_ro03220 3405421 - 3406197 + | IclR family transcriptional regulator pyk3 3407782 - 3406271 - | pyruvate kinase TERM 1132 3407519 - 3407542 + g 95 -14.6 -4.11281 | gap 1 GACCGCCTTCCCCGT CGCGTCCGAGG CCG CC-CGGACGCG TTTGTAGTTCTCCTC RHA1_ro03222 3408249 - 3407779 - | hypothetical protein RHA1_ro03223 3410086 - 3408281 - | glyoxylate carboligase RHA1_ro03224 3411007 - 3410123 - | 2-hydroxy-3-oxopropionate reductase RHA1_ro03225 3411867 - 3411043 - | hydroxypyruvate isomerase TERM 1133 3411339 - 3411380 + g 75 -10.1 -4.08767 | gap 1, overlap 3411339 TTTCGACGCCGTGCT C-GCTGCGTACGCGGTCG ATGACCG CGACCGCGTCGGCGGCCG TTTTGAGCGGGTAGG RHA1_ro03226 3412117 - 3412578 + | hypothetical protein RHA1_ro03227 3412640 - 3414013 + | glycolate oxidase FAD-linked subunit RHA1_ro03228 3414013 - 3414411 + | L-lactate permease TERM 1134 3415349 - 3415391 + G 73 -12.1 -3.53012 | gap 1, opp_overlap 3415369, overlap 3415351 3415387 CGCCTGCATGCCACC GCTCGCGACGTTCCGACA TACGCCAT TGTCGGGGTGTCGCG-GC TTTCCCCGGAAGAGG RHA1_ro03229 3414413 - 3415552 + | glycerate kinase TERM 1135 3415606 - 3415556 - f 90 -16.4 -3.36968 | gap 1, overlap 3415559 GATCGAACCTGAGAA GAACGTGCGGGGCTCCTCACGAA CCGATC TTC-TGAGTAACCCCGCACATTC ACCACACCAGATCTG TERM 1136 3415603 - 3415559 - f 81 -12.3 -3.82191 | gap 1, overlap 3415556 CGAACCTGAGAAGAA CGTGCGGGGCTCCTCACGAA CCGATC TTC-TGAGTAACCCCGCACA TTCACCACACCAGAT RHA1_ro03230 3415706 - 3416122 + | WhiB family transcriptional regulator RHA1_ro03231 3416494 - 3417705 + | major facilitator superfamily multidrug resistance protein RHA1_ro03232 3418726 - 3418082 - | GntR family transcriptional regulator TERM 1137 3418476 - 3418453 - G 72 -14.6 -2.86343 | ATCTGAACGAGCACA GGCTGCCGGT CTCC ACCAGCAGCC GGGCCGCAACGATGT RHA1_ro03233 3419373 - 3418903 - | transposase RHA1_ro03234 3420220 - 3419426 - | GntR family transcriptional regulator RHA1_ro03235 3420238 - 3421938 + | L-lactate permease RHA1_ro03236 3421935 - 3423305 + | D-lactate dehydrogenase (cytochrome) TERM 1138 3423306 - 3423328 + T 86 -9.8 -4.58395 | opp_overlap 3423306 3423308 GGCAGGGGCATGTAA TACGGGGCGG GGA CGGCTCCGTA TTTTTCCGCCGTGCG TERM 1139 3423574 - 3423517 - T 87 -18.7 -2.76263 | opp_overlap 3423521 CGCAGCACTGAACTA CCGATGTTCGTTTTGTCCGTTGTTCAC CGCA GTGAACAACGGACAAAACGGACATTCT TGGGGGTCTTGGATG TERM 1140 3423521 - 3423570 + T 100 -30.5 -3.65201 | opp_overlap 3423517 GCACTGAACTACCGA TGTTCGTTTTGTCCGTTGTTCAC CGCA GTGAACAACGGACAAAACGGACA TTCTTGGGGGTCTTG RHA1_ro03237 3425723 - 3423885 - | LuxR family transcriptional regulator RHA1_ro03238 3426573 - 3426265 - | hypothetical protein RHA1_ro03239 3428106 - 3426976 - | transposase TERM 1141 3427943 - 3427916 - G 72 -6.2 -4.26903 | gap 1 CGGAGCTCACCAAAA CCGGCGCCGCACA GGC TGT-CGGCCTCGG CGCCCATCAGCGCGT RHA1_ro03240 3428232 - 3428495 + | hypothetical protein RHA1_ro03241 3429099 - 3428524 - | hypothetical protein TERM 1142 3429105 - 3429121 + r 72 -8.7 -4.11394 | opp_overlap 3429104 GATCAAGCACGCAAT CCGGACT CGC AGTTCGG TTTTGGCGATCGGCT RHA1_ro03242 3430630 - 3429380 - | transcriptional regulator TERM 1143 3429762 - 3429793 + g 74 -13.8 -3.29649 | TCGGAGACGCTGTGA TGCATGGTCCTGGA GCTC TCCAGGGCCATCCA TTCCTGTACTCGGAT RHA1_ro03243 3431297 - 3432070 + | enoyl-CoA hydratase RHA1_ro03244 3432072 - 3433259 + | acyl-CoA dehydrogenase RHA1_ro03245 3433259 - 3434332 + | acyl-CoA dehydrogenase RHA1_ro03246 3434329 - 3435945 + | acid-CoA ligase RHA1_ro03247 3435990 - 3437621 + | cyclopentanone 1,2-monooxygenase RHA1_ro03248 3437966 - 3437691 - | hypothetical protein TERM 1144 3438182 - 3438159 - g 75 -10.2 -3.99678 | opp_overlap 3438158 3438161 ACGCCGATAACCAAA GTGCCCGGAC GACC GTCCGGACTC GGTTTCCTACCCGAC RHA1_ro03249 3438009 - 3438875 + | 5-valerolactone hydrolase RHA1_ro03250 3439932 - 3439081 - | transposase RHA1_ro03251 3440810 - 3441151 + | WhiB family transcriptional regulator RHA1_ro03252 3441148 - 3441609 + | hypothetical protein TERM 1145 3442298 - 3442341 + T 75 -13.9 -3.03771 | opp_overlap 3442305 3442326 GTGATGTGACACGCA CGACCAA-GGCCCCCGCTCCC GCAA GGGATCGGGGGCCGTTCG-CG TCTTCCACCGTGTCG TERM 1146 3442334 - 3442305 - T 100 -20.7 -3.22774 | opp_overlap 3442298, overlap 3442326 GACACGCACGACCAA GGCCCCCGCTCCC GCAA GGGATCGGGGGCC GTTCGCGTCTTCCAC RHA1_ro03253 3444687 - 3442363 - | hypothetical protein TERM 1147 3443470 - 3443500 + g 72 -13.2 -3.17212 | CCCGCCCGCGGCAGG CGCCGGCGTGACCG GGA CGGTGACGTCGACG TTGGTCACGTACTGG TERM 1148 3444483 - 3444532 + g 100 -20.8 -3.64703 | gap 2 CGGCCGGGTTGGCCG CGACGCCG--GTCGGCGAGGTGCC GACG GGCACCGAGCCGACGACGGCGTCG TTTGCGTCGAGCACG RHA1_ro03254 3444883 - 3445977 + | hypothetical protein TERM 1149 3446336 - 3446355 + T 95 -7.8 -4.99861 | overlap 3446337 AGTCGCGGATCTGAA CCGCGTAG TCGA CTACGCGA TTTTTCTGGTTACTG TERM 1150 3446337 - 3446354 + T 74 -11.3 -3.58832 | overlap 3446336 GTCGCGGATCTGAAC CGCGTAG TCGA CTACGCG ATTTTTCTGGTTACT RHA1_ro03255 3448840 - 3446384 - | transcriptional regulator RHA1_ro03256 3449010 - 3449369 + | hypothetical protein RHA1_ro03257 3449501 - 3450031 + | hypothetical protein RHA1_ro03258 3450688 - 3450179 - | MerR family transcriptional regulator TERM 1151 3450595 - 3450561 - G 77 -17.1 -2.52676 | gap 1, opp_overlap 3450557 3450556 CACCTTTCCAACGGA CAGGGCCCCCGGCGCC GTGA GGCACCGGGGG-CCGG AGCGGGTTTCACTTC RHA1_ro03259 3451722 - 3451165 - | hypothetical protein RHA1_ro03260 3452052 - 3452195 + | hypothetical protein RHA1_ro03261 3452779 - 3452225 - | hypothetical protein RHA1_ro03262 3453224 - 3452829 - | hypothetical protein RHA1_ro03263 3453446 - 3453715 + | WhiB family transcriptional regulator RHA1_ro03264 3454201 - 3454491 + | hypothetical protein RHA1_ro03265 3454811 - 3454536 - | hypothetical protein RHA1_ro03266 3455326 - 3454883 - | hypothetical protein TERM 1152 3455518 - 3455508 - R 88 -2.4 -5.24531 | overlap 3455509 3455510 AGCGCCCACAAAAAA CCCG TCG CGGC CCCGCAACCACAACT RHA1_ro03267 3458141 - 3456000 - | hypothetical protein TERM 1153 3458524 - 3458491 - g 71 -11 -3.55563 | gap 1, overlap 3458492 ACGTCACCCGGGAAA CCGACCCGCTCGACG AGCGG CG-CAAGCGGGTCGC GATCACCGAGTCCGG TERM 1154 3458523 - 3458492 - g 70 -14.5 -2.73124 | gap 1, overlap 3458491 CGTCACCCGGGAAAC CGACCCGCTCGACG AGCGG CG-CAAGCGGGTCG CGATCACCGAGTCCG RHA1_ro03268 3458241 - 3458675 + | MarR family transcriptional regulator RHA1_ro03269 3459488 - 3458685 - | hypothetical protein TERM 1155 3459577 - 3459525 - R 74 -11.1 -3.61894 | AACTGGGGGGAAGAA CGGGTGGGACGCGCGCGAACTCG ACTGCCG CGACTCCGCGCGCGTCCCGGGTG AGCCGGCTCAGCCGC RHA1_ro03270 3460127 - 3459585 - | 19 kDa lipoprotein antigen precursor RHA1_ro03272 3462071 - 3461595 - | hypothetical protein RHA1_ro03271 3460313 - 3461662 + | hypothetical protein RHA1_ro03273 3462381 - 3462091 - | hypothetical protein TERM 1156 3463543 - 3463523 - g 77 -15.5 -3.13403 | overlap 3463521 GCTTCCGGAGCAATA CTCGACGTC GCG GACGTCGAG ACCCGCCTCGCCACC RHA1_ro03274 3462704 - 3464203 + | hypothetical protein RHA1_ro03275 3464418 - 3464981 + | alkyl hydroperoxide reductase ahpF 3465156 - 3466748 + | alkyl hydroperoxide reductase subunit F TERM 1157 3466759 - 3466798 + F 93 -17.3 -3.59979 | gap 1, overlap 3466767 CGTAGCTCGGCCGAG GTCGACGAGCCGTGCCTG CACGT CAGGCACGGCTT-TCGGC TTTCAGATCGACCCG TERM 1158 3466767 - 3466791 + F 93 -17.2 -3.71917 | overlap 3466759 GGCCGAGGTCGACGA GCCGTGCCTG CACGT CAGGCACGGC TTTCGGCTTTCAGAT RHA1_ro03277 3466770 - 3468137 + | hypothetical protein RHA1_ro03278 3468228 - 3468641 + | hypothetical protein RHA1_ro03279 3469643 - 3468606 - | oxidoreductase RHA1_ro03280 3469907 - 3470623 + | TetR family transcriptional regulator RHA1_ro03281 3471066 - 3472247 + | Zn-binding alcohol dehydrogenase TERM 1159 3472314 - 3472256 - f 89 -18.1 -2.84171 | opp_overlap 3472261 3472262, overlap 3472243 3472242 3472254 ACCCTGAAAAACTCA GGCGCAAGCGGCGGTGGCCGGGAT-CCCG TGA CGGGTATCCCGGCCACCGCCGCC-GTTTT GCGCAAACCGGATAG TERM 1160 3472261 - 3472310 + F 100 -30.1 -4.07568 | gap 1, opp_overlap 3472254 3472256, overlap 3472262 GAAAAACTCAGGCGC AAGCGGCGGTGGCCGGGAT-CCCG TGA CGGGTATCCCGGCCACCGCCGCCG TTTTGCGCAAACCGG TERM 1161 3472262 - 3472309 + F 100 -33.6 -3.04398 | gap 1, opp_overlap 3472254 3472256, overlap 3472261 AAAAACTCAGGCGCA AGCGGCGGTGGCCGGGAT-CCCG TGA CGGGTATCCCGGCCACCGCCGCC GTTTTGCGCAAACCG RHA1_ro03282 3472529 - 3474109 + | vanillyl-alcohol oxidase RHA1_ro03283 3474614 - 3474123 - | MarR family transcriptional regulator RHA1_ro03284 3474773 - 3476254 + | aldehyde dehydrogenase xylB 3476281 - 3477384 + | aryl-alcohol dehydrogenase RHA1_ro03286 3478311 - 3477385 - | AraC family transcriptional regulator RHA1_ro03287 3478483 - 3478698 + | hypothetical protein RHA1_ro03288 3479086 - 3478718 - | glutamate dehydrogenase (NAD(P)+) RHA1_ro03289 3480014 - 3479343 - | S-adenosylmethionine:2-demethylmenaquinone methyltransferase aspC 3481257 - 3480049 - | aspartate aminotransferase TERM 1162 3481183 - 3481127 - G 73 -12.8 -3.53012 | TCCGGTGTGTCGAAA TCGGGTTCTCCGACCGTCAGGTCGAG GATCT CCCGCCCCGACGCCCGGAGCTCGCGA ACCCGTTGCGCAGCT RHA1_ro03291 3482461 - 3481397 - | Zn-binding alcohol dehydrogenase RHA1_ro03292 3483225 - 3482458 - | short chain dehydrogenase RHA1_ro03293 3484664 - 3483315 - | MFS superfamily proline/ betaine transporter RHA1_ro03294 3485704 - 3484661 - | allophanate hydrolase subunit 2 TERM 1163 3485233 - 3485277 + g 79 -18.6 -2.52464 | gap 1 GGAAGTGCGGGTGGT CGATCGGCG-GTCCGTCGACG TCGA TGGCGACGGACTCGCCGACCG TCAGTTGCCGGCCGA RHA1_ro03295 3486419 - 3485697 - | allophanate hydrolase subunit 1 RHA1_ro03296 3487237 - 3486407 - | lactam utilization protein TERM 1164 3486829 - 3486872 + g 73 -12.3 -3.53012 | gap 1, overlap 3486830 CGAACGCTTCCACCG CGTCGACGACGGCGCGGGCG TAGTC CGCCCGCGTCG-CGACGAGA TTTCCCAACCGACCG TERM 1165 3486830 - 3486871 + g 74 -15.8 -2.71712 | gap 1, overlap 3486829 GAACGCTTCCACCGC GTCGACGACGGCGCGGGCG TAGTC CGCCCGCGTCG-CGACGAG ATTTCCCAACCGACC RHA1_ro03297 3487493 - 3488425 + | LysR family transcriptional regulator RHA1_ro03298 3489348 - 3488419 - | phosphoglycerate dehydrogenase gno 3490148 - 3489375 - | gluconate 5-dehydrogenase RHA1_ro03300 3490747 - 3490145 - | gluconokinase RHA1_ro03301 3493028 - 3490806 - | pyruvate dehydrogenase (acetyl-transferring) beta subunit TERM 1166 3492741 - 3492727 - G 73 -7.8 -4.24342 | CGCGCCAGGAAGAAA CCACCG GAA CGGTAG TGCAGCAGAGCGGGA solA 3493212 - 3494348 + | N-methyltryptophan oxidase RHA1_ro03303 3495607 - 3494420 - | oxidoreductase RHA1_ro03304 3496696 - 3495782 - | 5-dehydro-4-deoxyglucarate dehydratase TERM 1167 3495859 - 3495893 + g 77 -14.9 -3.23216 | ACGGCGCGCGGACGG GGCCGGCGGGTCGGT CGATC ACCGTCATGCCGGCC TTGATGATGCTGACC TERM 1168 3496844 - 3496880 + r 100 -18.9 -3.34013 | gap 1, opp_overlap 3496844 3496870 TCTGCGCCGAACCAA CGGGACGCTCGTT-CG ATCTGA CGCAACGAGCGTCCCG TTCGTTCAGGAGATG TERM 1169 3496880 - 3496844 - R 100 -18.9 -3.33696 | gap 1, opp_overlap 3496844, overlap 3496870 TCTGCGCCGAACCAA CGGGACGCTCGTT-CG ATCTGA CGCAACGAGCGTCCCG TTCGTTCAGGAGATG RHA1_ro03305 3499339 - 3496886 - | pyruvate dehydrogenase E1 component TERM 1170 3497761 - 3497771 + g 72 -8.2 -4.08216 | CGAGTTCCATGTGCT GCCC GGT GGGC TTTTCCCGCCAGTGC RHA1_ro03306 3499559 - 3499921 + | hypothetical protein RHA1_ro03307 3500313 - 3500459 + | hypothetical protein TERM 1171 3500477 - 3500502 + T 89 -18.3 -2.8655 | opp_overlap 3500471 GGGAACCCATCGGAG GTCGGGCGCGT TTTC GCGCGCCCGAC TCTCCTGTCAGTCGG RHA1_ro03308 3502882 - 3500510 - | arylsulfatase TERM 1172 3501763 - 3501791 + g 74 -13.7 -3.30124 | opp_overlap 3501757 3501756 AATACGAACGCGTTC CCGCCGCGCCGCC CTC GGCGGTGCCGCCG TTGTCGGACGTGAAC TERM 1173 3503478 - 3503462 - g 71 -11.5 -3.61398 | opp_overlap 3503449, overlap 3503472 GTCGCTGGGCAACAA CCCCACC AAC GGCGGGG TCTCGGCCAACGTCT RHA1_ro03309 3503229 - 3504833 + | ABC peptide transporter, substrate-binding component TERM 1174 3505362 - 3505389 + G 85 -17 -3.14132 | CCTCTGGCCGATCCT GCCGTCGGGTGG GACC CCACCCGACGGG TTCCTGACCCGGCCC RHA1_ro03310 3504877 - 3505836 + | ABC peptide transporter, permease component RHA1_ro03311 3505833 - 3506765 + | ABC peptide transporter, permease component RHA1_ro03312 3506778 - 3508427 + | ABC peptide transporter, ATP-binding component RHA1_ro03313 3508568 - 3509755 + | hypothetical protein RHA1_ro03314 3510139 - 3509765 - | hypothetical protein RHA1_ro03315 3510199 - 3511035 + | hypothetical protein RHA1_ro03316 3511482 - 3511048 - | lyase, glyoxalase family protein RHA1_ro03317 3513252 - 3511582 - | transposase dldH3 3514771 - 3513398 - | dihydrolipoamide dehydrogenase pdhC 3516003 - 3514771 - | branched-chain alpha-keto acid dehydrogenase subunit E2 pdhB1 3517004 - 3516000 - | pyruvate dehydrogenase E1 component beta subunit TERM 1175 3516948 - 3516896 - G 91 -21.9 -3.04144 | opp_overlap 3516908 3516922, overlap 3516932 CGGTGACGCGGAAGA CGCCGCCGAGGGCGCCGACGTCCTC GCC GAAGACGACGACGTTCTCGTCGGCG GCGAGGGCGTCGCGC pdhA2 3518127 - 3517009 - | pyruvate dehydrogenase E1 component alpha subunit RHA1_ro03322 3518239 - 3518757 + | AsnC family transcriptional regulator RHA1_ro03323 3518779 - 3519447 + | hypothetical protein RHA1_ro03324 3520938 - 3519478 - | Fe-regulated membrane protein RHA1_ro03325 3521674 - 3521156 - | hypothetical protein RHA1_ro03326 3522717 - 3521683 - | CBS domain-containing protein RHA1_ro03327 3524077 - 3522710 - | Mg2+/Co2+ transporter TERM 1176 3523086 - 3523143 + gH 70 -8.4 -3.83026 | overlap 3523087 ACGAGTTCCTCCGCG AGGTCCTCGATCGT-GATGACGCCGGCG AATC CGCCGTACTCGTCGACGA-CGAGGGCCA TTTCGTCTCGGGCGG RHA1_ro03328 3524058 - 3524300 + | hypothetical protein RHA1_ro03329 3524495 - 3525019 + | hypothetical protein RHA1_ro03330 3525030 - 3526088 + | lipoic acid synthetase RHA1_ro03331 3526090 - 3527523 + | hypothetical protein RHA1_ro03332 3527520 - 3528476 + | nitrilase RHA1_ro03333 3528469 - 3528771 + | hypothetical protein RHA1_ro03334 3528771 - 3530027 + | monooxygenase RHA1_ro03335 3530033 - 3530881 + | nitrilase TERM 1177 3531765 - 3531788 + G 73 -12.4 -3.53224 | CCCGTCGTCGCACGT GACCTGCCGG TCCT CCGGGAGGTC TTTCGCGGGACGGTC RHA1_ro03336 3530883 - 3531962 + | glycosyl transferase RHA1_ro03337 3532440 - 3531964 - | leucine-responsive regulator RHA1_ro03338 3532482 - 3533225 + | branched chain amino acid ABC transporter RHA1_ro03339 3533218 - 3533547 + | branched chain amino acid ABC transporter RHA1_ro03340 3533635 - 3533871 + | hypothetical protein TERM 1178 3533890 - 3533917 + T 93 -18.4 -3.29511 | opp_overlap 3533891, overlap 3533891 3533911 CACCGCAGAACGAAA ACCGCCGGCACC AAAT GGTGCCGGCGGC TTCTGCGACGGTGCC TERM 1179 3533916 - 3533891 - T 100 -21.9 -4.49389 | opp_overlap 3533891 3533890 3533911 ACCGCAGAACGAAAA CCGCCGGCACC AAAT GGTGCCGGCGG CTTCTGCGACGGTGC TERM 1180 3533891 - 3533916 + T 100 -21.9 -2.57564 | opp_overlap 3533891, overlap 3533890 3533911 ACCGCAGAACGAAAA CCGCCGGCACC AAAT GGTGCCGGCGG CTTCTGCGACGGTGC TERM 1181 3533954 - 3533972 + T 70 -5.2 -4.371 | overlap 3533956 TCGCCTCTCGGCAAG TGGTCGCT CTC GGCGACAA TTTTAATGTGGTACC RHA1_ro03341 3534703 - 3534056 - | hypothetical protein RHA1_ro03342 3535280 - 3534750 - | hypothetical protein RHA1_ro03343 3536107 - 3535400 - | TetR family transcriptional regulator TERM 1182 3536373 - 3536359 - g 78 -6.4 -4.60487 | overlap 3536372 GAGTATCGGGAAAAA GCTTCG CCA CAAAGC TGAAACCGCCGAAGG RHA1_ro03344 3536342 - 3536536 + | hypothetical protein RHA1_ro03345 3536588 - 3536743 + | hypothetical protein RHA1_ro03346 3536786 - 3537988 + | fatty acid desaturase RHA1_ro03347 3538310 - 3538008 - | WhiB family transcriptional regulator TERM 1183 3538923 - 3538907 - g 76 -13.7 -3.44527 | CACCGAGGAGCAGAA GCGGCAG TAT CTGCCGC AGATGGCGACCGGCG RHA1_ro03348 3538593 - 3539744 + | butyryl-CoA dehydrogenase RHA1_ro03349 3540691 - 3539756 - | LysR family transcriptional regulator TERM 1184 3539960 - 3539935 - G 70 -12.5 -3.35679 | overlap 3539917 3539952 GCGCCGCACTGAGAA CGCCGCCGGCG ACAT CACCGGCAACG GCGATGCCCGGCAGG RHA1_ro03350 3541682 - 3540903 - | hydrolase RHA1_ro03351 3542882 - 3541692 - | formyl-CoA transferase TERM 1185 3541922 - 3541912 - G 75 -6.8 -4.52589 | overlap 3541914 GGGTGGGACAGAAAA TCCG AGA CGGA GCCCAGCCGTCCGTT RHA1_ro03352 3543926 - 3543000 - | hypothetical protein RHA1_ro03353 3545364 - 3543919 - | sensor kinase, two-component system RHA1_ro03354 3546051 - 3545383 - | response regulator, two-component system TERM 1186 3546089 - 3546045 - G 100 -23 -3.31144 | CCGCGATGCGCATAA CCGGCATTG-TCCCCCGGCCGC GGT GCG-CCGGGGGAACATTGCCGG AGGACGAGGGATCAG RHA1_ro03355 3547501 - 3546101 - | alpha-ketoglutarate transporter TERM 1187 3547657 - 3547680 + H 78 -3 -4.91109 | gap 1, overlap 3547658 GAGGGTGAGCCTTAT CGGCATCG-GC CGA GCTCGAGGCCA TTTTTCTCGTCGCGA RHA1_ro03356 3547838 - 3548374 + | sulfopyruvate decarboxylase alpha subunit RHA1_ro03357 3548374 - 3548967 + | sulfopyruvate decarboxylase beta subunit RHA1_ro03358 3548984 - 3549643 + | aldehyde dehydrogenase RHA1_ro03359 3550988 - 3549729 - | transposase RHA1_ro03360 3550995 - 3551888 + | aldehyde dehydrogenase RHA1_ro03361 3552463 - 3553002 + | hypothetical protein RHA1_ro03362 3553405 - 3553013 - | barnase inhibitor RHA1_ro03363 3553725 - 3553402 - | WhiB family transcriptional regulator RHA1_ro03364 3553948 - 3555414 + | hypothetical protein RHA1_ro03365 3555891 - 3555424 - | hydrolase RHA1_ro03366 3557331 - 3556009 - | amino acid transporter RHA1_ro03367 3558023 - 3558409 + | ArsR family transcriptional regulator RHA1_ro03368 3558406 - 3559494 + | arsenic resistance transporter RHA1_ro03369 3559491 - 3559898 + | arsenate reductase (glutaredoxin) RHA1_ro03370 3563242 - 3560003 - | protein kinase/ LuxR family transcriptional regulator TERM 1188 3563431 - 3563384 - R 89 -17.1 -3.28712 | gap 1 GGGTTGGCTGCACAA CCGAAGGCGAACCGAGTGGCTC GGAAT GAGCCACCCGGT-CGCTCTCAG CTCGTGCGCTGGCAC RHA1_ro03371 3564648 - 3563461 - | epoxide hydrolase RHA1_ro03372 3565141 - 3564776 - | hypothetical protein RHA1_ro03373 3568523 - 3565239 - | protein kinase/ LuxR family transcriptional regulator TERM 1189 3568748 - 3568799 + H 78 -14.4 -3.25823 | overlap 3568749 GGGCTCGACGGCCCC GGGCAGCCAGGCCC-CCTGGCCGG TCCCCC TCGGCCGGGAGGGCC-GTCTGCCG TTCGTGTCCGAGGAC TERM 1190 3568749 - 3568798 + H 83 -17.9 -2.55351 | overlap 3568748 GGCTCGACGGCCCCG GGCAGCCAGGCCC-CCTGGCCGG TCCCCC TCGGCCGGGAGGGCC-GTCTGCC GTTCGTGTCCGAGGA RHA1_ro03375 3570109 - 3570690 + | isochorismatase RHA1_ro03374 3569181 - 3570719 + | permease RHA1_ro03376 3571692 - 3570727 - | sugar phosphate isomerase/epimerase dldH4 3573140 - 3571764 - | dihydrolipoamide dehydrogenase RHA1_ro03378 3574479 - 3573205 - | branched-chain alpha-keto acid dehydrogenase subunit E2 pdhB2 3575497 - 3574496 - | pyruvate dehydrogenase E1 component beta subunit pdhA3 3576579 - 3575494 - | pyruvate dehydrogenase E1 component alpha subunit RHA1_ro03381 3576707 - 3577222 + | AsnC family transcriptional regulator TERM 1191 3577225 - 3577257 + T 73 -12 -3.33492 | opp_overlap 3577223 3577220 3577227, overlap 3577227 3577255 CGAGGAGCAATGACG AAGGCGCTGCCG TCGACCGCC CGGCAGCGCCTG TTCTCCGATCAGTGG TERM 1192 3577255 - 3577227 - T 83 -14.6 -3.29364 | opp_overlap 3577227 3577225, overlap 3577223 3577220 AGGAGCAATGACGAA GGCGCTGCCG TCGACCGCC CGGCAGCGCC TGTTCTCCGATCAGT TERM 1193 3577227 - 3577255 + T 83 -14.6 -3.23572 | opp_overlap 3577223 3577220 3577227, overlap 3577225 AGGAGCAATGACGAA GGCGCTGCCG TCGACCGCC CGGCAGCGCC TGTTCTCCGATCAGT RHA1_ro03382 3578615 - 3577266 - | MFS superfamily tartrate symporter RHA1_ro03383 3579386 - 3578769 - | TetR family transcriptional regulator RHA1_ro03384 3579478 - 3581235 + | dipeptidyl aminopeptidase RHA1_ro03385 3581247 - 3582029 + | cyclase RHA1_ro03386 3582026 - 3582946 + | fumarylacetoacetate hydrolase family protein RHA1_ro03387 3584319 - 3582952 - | FAD-binding oxidoreductase RHA1_ro03388 3584425 - 3586293 + | regulator of polyketide synthase expression SrmR RHA1_ro03389 3586884 - 3586300 - | TetR family transcriptional regulator RHA1_ro03390 3586986 - 3588128 + | butyryl-CoA dehydrogenase RHA1_ro03391 3588161 - 3589342 + | acetyl-CoA acetyltransferase RHA1_ro03392 3589389 - 3590150 + | 3-hydroxyacyl-CoA dehydrogenase TERM 1194 3590690 - 3590644 - g 78 -15.8 -3.07113 | gap 1 CAGCATCGCAGCCAA CGAGGCCGCCGCGTGTCCGCG GTGCAA CGCGGAC-CGCGGCCACACCG GTCCGGTCGACTGGC RHA1_ro03393 3590288 - 3590869 + | hypothetical protein TERM 1195 3591088 - 3591117 + F 76 -13.6 -3.14522 | opp_overlap 3591082 CCGGAAGGATGAGGA GTCGCTGACACC GGGGAA GGTGTCGGCGGC TTCCCTCTGCCTTGG RHA1_ro03394 3591379 - 3592077 + | hypothetical protein RHA1_ro03395 3592714 - 3592109 - | hypothetical protein RHA1_ro03396 3593020 - 3592742 - | hypothetical protein RHA1_ro03397 3593727 - 3593044 - | IF2 family translation initiation factor TERM 1196 3593112 - 3593130 + g 73 -10.2 -3.86015 | overlap 3593118 3593120 CGGCCAGCTTCTCCA CGCGGTCG GCG CGAGCGCG TTTGTCCGCCGCCTC RHA1_ro03398 3594315 - 3593758 - | TolA protein TERM 1197 3593999 - 3594036 + g 78 -14.1 -3.61398 | gap 1 TGCTGGTTCTGCTCC GCTGCCTGGTGCTCGGCG TGC TGCCG-GTTCCGGGCAGC TTCTTCGGCGGCCGC RHA1_ro03399 3595338 - 3594379 - | hypothetical protein TERM 1198 3594782 - 3594738 - G 70 -12.8 -3.28924 | gap 1, opp_overlap 3594736 3594759 CACCGCGGCTCAGAA GCG-CACCGATCCGGTCCGGG GTGG CCCGGACGGTGTCGATGGCGC GATCGATTCCGCGCG RHA1_ro03400 3595586 - 3595335 - | hypothetical protein TERM 1199 3595969 - 3595922 - R 84 -17 -2.79098 | gap 1, overlap 3595919 TCGATCGACCAACGA CGCGGCGCGGAGG-TCCGGCA GATGTGG CGCCGGAACCCCCGCGCTACG AGAAGGACTAGACGC RHA1_ro03401 3596300 - 3595977 - | hypothetical protein RHA1_ro03402 3596585 - 3597265 + | TetR family transcriptional regulator RHA1_ro03403 3597323 - 3597811 + | hypothetical protein RHA1_ro03404 3598556 - 3597873 - | transcription antitermination regulator RHA1_ro03405 3598882 - 3599400 + | hypothetical protein RHA1_ro03406 3599542 - 3599979 + | hypothetical protein RHA1_ro03407 3600626 - 3600222 - | gas vesicle protein RHA1_ro03408 3600913 - 3600623 - | gas vesicle synthesis protein RHA1_ro03409 3601845 - 3601039 - | gas vesicle synthesis protein RHA1_ro03410 3602219 - 3601845 - | gas vesicle structural protein RHA1_ro03411 3603544 - 3602216 - | hypothetical protein RHA1_ro03412 3604344 - 3603550 - | hypothetical protein TERM 1200 3604401 - 3604421 + r 82 -3.9 -5.08824 | GATGTGCCGCAAGAC CGTGCGC GGTAGGG GTGCGCG TTTTTTGACTACCCC RHA1_ro03413 3605548 - 3604637 - | hypothetical protein TERM 1201 3605212 - 3605264 + g 73 -16 -2.57192 | overlap 3605218 3605256 GCCCGGAGGACTCCT CGCCGTCGGCGCGCCGCCGACGGG GTGTG CCCGAGGCCGACGCGGCGGCGGTG TCCGTTCGCTTCGGT RHA1_ro03414 3606130 - 3605717 - | hypothetical protein RHA1_ro03415 3606975 - 3606238 - | hypothetical protein RHA1_ro03416 3607956 - 3607492 - | hypothetical protein RHA1_ro03417 3608156 - 3608656 + | hypothetical protein RHA1_ro03418 3608682 - 3609392 + | hypothetical protein TERM 1202 3609653 - 3609600 - T 87 -17.6 -2.90075 | gap 2, opp_overlap 3609598 TCGTCTCGAACGAGA GTCGGGCGACGAGGGCCTCGACACCA TCGG CGGCGTCGAGACCCTCGT--CCAGAC AATTCACTTCACACG RHA1_ro03419 3611855 - 3609675 - | catalase RHA1_ro03420 3612048 - 3612497 + | hypothetical protein RHA1_ro03421 3613118 - 3612720 - | hypothetical protein RHA1_ro03422 3613250 - 3614458 + | fatty acid desaturase RHA1_ro03423 3615693 - 3614755 - | oxidoreductase RHA1_ro03424 3616082 - 3615765 - | hypothetical protein RHA1_ro03425 3616761 - 3616450 - | hypothetical protein TERM 1203 3617018 - 3617073 + r 75 -12 -3.53444 | gap 2, overlap 3617019 GAGGACCCCGCCACG ACG-GCA-TGCCGGCTCGGCAACAGG AATCGG CCTGTTGCAGAGTCGGCAGTGTGCGC TTTGCGGGGCGGTCA TERM 1204 3617019 - 3617072 + r 78 -15.5 -2.71924 | gap 2, overlap 3617018 AGGACCCCGCCACGA CG-GCA-TGCCGGCTCGGCAACAGG AATCGG CCTGTTGCAGAGTCGGCAGTGTGCG CTTTGCGGGGCGGTC RHA1_ro03426 3618402 - 3617086 - | hypothetical protein TERM 1205 3618963 - 3618915 - R 100 -21.2 -3.08996 | GAGGCCCACCGAATA CGCGACGACGCCCGGGA-GAGCAG CCA CTGCTCGTCCCGGGCGTCGT-GAA CCTACGGTGGCGCCG gap1 3620056 - 3618980 - | glyceraldehyde-3-phosphate dehydrogenase dnaB 3622191 - 3620782 - | replicative DNA helicase TERM 1206 3622734 - 3622693 - R 100 -22.3 -3.42056 | overlap 3622694 3622696 AGCCGGAATCGACAA GCACAGGCCCCCCACACGC CGAG GCGTCCGGGGGGCCTGTGA GTAAACGAGTCGACT TERM 1207 3622733 - 3622694 - R 100 -25.8 -2.64912 | overlap 3622693 3622696 GCCGGAATCGACAAG CACAGGCCCCCCACACGC CGAG GCGTCCGGGGGGCCTGTG AGTAAACGAGTCGAC TERM 1208 3622731 - 3622696 - R 100 -22.6 -2.86539 | overlap 3622694 3622693 CGGAATCGACAAGCA CAGGCCCCCCACACGC CGAG GCGTCCGGGGGGCCTG TGAGTAAACGAGTCG rplI 3623203 - 3622748 - | 50S ribosomal protein L9 TERM 1209 3623020 - 3623038 + g 72 -13.8 -3.14132 | overlap 3623026 CCTTGGCGTGGTCGA GTCCGCGC ACG GCGCGGGC TTCCTGCGCACGACG rpsR 3623463 - 3623221 - | 30S ribosomal protein S18 TERM 1210 3623386 - 3623422 + g 72 -8.8 -4.0342 | overlap 3623410 CGTGTCCTTGTAGTT GATCTGCGTGTTCTTC TCTTT GCAGAAGATGCAGATC TTCTTCTTCATTACC RHA1_ro03431 3624023 - 3623502 - | single-strand DNA-binding protein TERM 1211 3624043 - 3624092 + r 71 -9.3 -3.78934 | gap 1, opp_overlap 3624042 3624043, overlap 3624031 TTCCTCCTGCAGAAT GTGGAGTTCGGTTGGGCACGAGCC TAG GGCTGGTGACCGACAGAAATC-AC TTGTTGTGGCGCAGA rpsF 3624376 - 3624089 - | 30S ribosomal protein S6 TERM 1212 3624432 - 3624410 - g 93 -13.4 -4.21462 | ATGGACTAGTGAAAA CGGCCACGGA CTG TCCGTGGCAG GAGGGTCGTTGCGTC TERM 1213 3624748 - 3624730 - g 86 -13.8 -3.86015 | overlap 3624708 GACGCCGTCCACAAA CCCGACGC CCT GCGCCGGG CGAGCGACTGACCTC RHA1_ro03433 3624403 - 3624759 + | hypothetical protein RHA1_ro03434 3624820 - 3626181 + | hypothetical protein TERM 1214 3626302 - 3626339 + G 85 -17.8 -3.14132 | gap 2 GCATCTTCCACTGGA CGTCCGCCGCGATCGCCG ACCG CGGCGA-CGCGGTGG-CG TTCGTCCGCACCGCC RHA1_ro03435 3626178 - 3626762 + | acetyltransferase RHA1_ro03436 3627722 - 3626778 - | esterase/ lipase RHA1_ro03437 3629394 - 3627751 - | flavin-binding monooxygenase RHA1_ro03438 3629617 - 3631908 + | LuxR family transcriptional regulator RHA1_ro03439 3632020 - 3632307 + | hypothetical protein RHA1_ro03440 3633908 - 3632304 - | hypothetical protein TERM 1215 3633772 - 3633828 + g 81 -18.6 -2.70932 | ATCACCCCGGAGAGG TCGGCGGTCAGCGGATCGGTGCGCCC GGGAA GGTCCCGCCAATCCGCGGAACGCCGA TCCTTCGCCAGCGGC RHA1_ro03441 3636207 - 3633931 - | peptidoglycan glycosyltransferase RHA1_ro03442 3637092 - 3636607 - | hypothetical protein TERM 1216 3636640 - 3636666 + g 74 -10.7 -3.75153 | opp_overlap 3636656 ACGGCTCGGAGGCCG CGGCCGTGGCG ACGAA CGCCTGGGCCG TTTCGGTTCGGGCAC RHA1_ro03443 3637127 - 3637981 + | hypothetical protein RHA1_ro03444 3637997 - 3638821 + | hypothetical protein RHA1_ro03445 3638829 - 3639620 + | hypothetical protein RHA1_ro03446 3639826 - 3640428 + | PadR family transcriptional regulator RHA1_ro03447 3640421 - 3641506 + | myo-inositol-1-phosphate synthase TERM 1217 3641525 - 3641573 + F 100 -29.2 -4.25401 | opp_overlap 3641507 3641535 GCGCAGCAGCTCCCG GGCGAATGCACCTTTCGTCGTC TTCAC GGCGATGAAAGGTGCATTCGCC TTTGTGTTCGATTTC RHA1_ro03448 3641641 - 3642891 + | hypothetical protein RHA1_ro03449 3645110 - 3642888 - | peptidoglycan glycosyltransferase RHA1_ro03450 3645434 - 3645243 - | hypothetical protein RHA1_ro03451 3646361 - 3645468 - | ABC sugar transporter, permease component RHA1_ro03452 3647407 - 3646358 - | ABC sugar transporter, permease component RHA1_ro03453 3648787 - 3647423 - | ABC sugar transporter, periplasmic substrate binding component RHA1_ro03454 3649930 - 3648857 - | ABC sugar transporter, ATP-binding component RHA1_ro03455 3651200 - 3650274 - | hypothetical protein RHA1_ro03456 3651263 - 3652231 + | ABC Fe(3+) transporter, permease component RHA1_ro03457 3652320 - 3653123 + | hypothetical protein TERM 1218 3653418 - 3653400 - T 71 -9.6 -3.78775 | overlap 3653415 CCGCCCACTACGAAA GCGATTGC GCC ACAATCGC TGTCCCCGAGCATCG RHA1_ro03458 3654364 - 3653651 - | hypothetical protein TERM 1219 3654105 - 3654083 - G 85 -16.2 -3.61398 | CGGCGCGCGGAAGAA CGCCCGCCGG ATG CCGGTGGGCG GGTCAGGCCTCTGCG TERM 1220 3654272 - 3654218 - G 82 -16.4 -3.29043 | opp_overlap 3654231, overlap 3654219 AAGGTGCGCCGACAA CCGGGTGAATGTACCGCTTGGCGC ATCTGGG GCGCCGGACGGTACATTCGCCCGC TCAGATCGTCCGCTC TERM 1221 3654271 - 3654219 - G 82 -19.9 -2.57211 | opp_overlap 3654231, overlap 3654218 AGGTGCGCCGACAAC CGGGTGAATGTACCGCTTGGCGC ATCTGGG GCGCCGGACGGTACATTCGCCCG CTCAGATCGTCCGCT RHA1_ro03459 3654367 - 3655161 + | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro03460 3656444 - 3655230 - | acetyl-CoA acetyltransferase TERM 1222 3656508 - 3656521 + H 70 -5.3 -4.41241 | overlap 3656516 3656517 GCAGCCCCTCAGTTC TAAGC ATAT GCTTA TTTTCTAAGCGTTTG RHA1_ro03461 3656700 - 3658166 + | acyl-CoA synthetase RHA1_ro03462 3658231 - 3660051 + | hypothetical protein RHA1_ro03463 3660048 - 3661481 + | dehydrogenase RHA1_ro03464 3661526 - 3662791 + | hypothetical protein RHA1_ro03465 3662883 - 3663374 + | hypothetical protein RHA1_ro03466 3665109 - 3663418 - | acyl-CoA dehydrogenase TERM 1223 3665023 - 3665041 + g 70 -14.6 -2.71144 | GGTGAACTCGTTGAC GTCGGTGC GGG GCACCGAC TGGTTGAGCACGGTG RHA1_ro03467 3666633 - 3665128 - | acyl CoA ligase RHA1_ro03468 3667292 - 3666657 - | TetR family transcriptional regulator RHA1_ro03469 3667425 - 3669236 + | amino acid ABC transporter permease RHA1_ro03470 3669241 - 3669966 + | ABC amino acid transporter, ATP-binding component RHA1_ro03471 3673427 - 3670035 - | NAD-specific glutamate dehydrogenase, C-terminal RHA1_ro03472 3674334 - 3673471 - | urea amidolyase RHA1_ro03473 3674981 - 3674331 - | allophanate hydrolase subunit 1 RHA1_ro03474 3675733 - 3674978 - | hypothetical protein RHA1_ro03475 3676511 - 3675723 - | hypothetical protein RHA1_ro03476 3677772 - 3676504 - | aromatic acid transporter RHA1_ro03477 3677948 - 3678655 + | GntR family transcriptional regulator RHA1_ro03478 3679367 - 3678672 - | GntR family transcriptional regulator RHA1_ro03479 3679360 - 3680202 + | CoB--CoM heterodisulfide reductase TERM 1224 3680767 - 3680751 - g 71 -10.9 -3.54129 | overlap 3680755 GAGATCTTCCTGAAA TCGATGC CGG GCATCGA CAAGGACATCACCGA RHA1_ro03480 3680199 - 3681680 + | Fe-S protein TERM 1225 3682204 - 3682183 - g 70 -12.3 -3.37344 | CCTCGACGCAACCAA GCCGCTGAC GTTC ATCAGCGGC CCCAGCGCCACCAGC RHA1_ro03481 3681677 - 3682288 + | hypothetical protein RHA1_ro03482 3683153 - 3682332 - | hypothetical protein RHA1_ro03483 3684166 - 3683150 - | hypothetical protein TERM 1226 3685334 - 3685295 - g 70 -12.2 -3.30159 | gap 1 GGAACGGTTCGACAA GCGTTTCGACCTCGCCCAG GAG CCGAACGAGGT-GAACCGC TTCGGCTACGTCGTC TERM 1227 3685962 - 3685928 - g 73 -7.7 -4.15654 | overlap 3685922 3685948 GAACAACAACAAGAA CGGCCAGGTCCTCGA ACTCA CCGACGACCACGCCG GCACCGCGTTCACGT RHA1_ro03484 3684324 - 3686393 + | hypothetical protein RHA1_ro03485 3687248 - 3686436 - | hypothetical protein TERM 1228 3687157 - 3687112 - G 71 -11.2 -3.57263 | gap 2, overlap 3687113 3687115 AGGTCGACGGCGAAA TCACCG--GCACGCCGGGCGGT GTGC ACCACCCGGCGTACGTCGTCGA GTCCCTCGAGCGCCG RHA1_ro03486 3689202 - 3687253 - | hydantoin utilization protein B RHA1_ro03487 3691382 - 3689199 - | hydantoin utilization protein A TERM 1229 3691463 - 3691427 - R 100 -21.8 -2.87344 | gap 1, opp_overlap 3691417 3691432, overlap 3691430 3691432 GATGGCCCGGACAGA CGACAGCACCCCGAACC GGAC GGTTCGGGGTGCTGT-G TGACGAGGTGTTCGC TERM 1230 3691461 - 3691430 - R 100 -24.6 -2.69151 | opp_overlap 3691417 3691432, overlap 3691427 3691432 GGCCCGGACAGACGA CAGCACCCCGAACC GGAC GGTTCGGGGTGCTG TGTGACGAGGTGTTC TERM 1231 3691459 - 3691432 - R 100 -21.4 -2.88999 | opp_overlap 3691432 3691417, overlap 3691430 3691427 CCCGGACAGACGACA GCACCCCGAACC GGAC GGTTCGGGGTGC TGTGTGACGAGGTGT TERM 1232 3691432 - 3691459 + r 100 -21.4 -2.87683 | opp_overlap 3691430 3691427 3691432, overlap 3691417 CCCGGACAGACGACA GCACCCCGAACC GGAC GGTTCGGGGTGC TGTGTGACGAGGTGT RHA1_ro03488 3692139 - 3691483 - | carbon monoxide dehydrogenase protein G RHA1_ro03489 3694634 - 3692136 - | carbon monoxide dehydrogenase large subunit RHA1_ro03490 3695281 - 3694631 - | carbon monoxide dehydrogenase small subunit (ferredoxin) RHA1_ro03491 3696189 - 3695278 - | dehydrogenase RHA1_ro03492 3697759 - 3696266 - | xanthine/uracil permease TERM 1233 3697583 - 3697559 - G 74 -14.3 -3.36749 | overlap 3697582 GATCGGGAAGACGAA CGTGGCCCCGA ACA TCGAGACCACG TGCTGCCCGCCGAGC RHA1_ro03493 3698976 - 3697858 - | carbohydrate diacid regulator RHA1_ro03494 3700756 - 3699653 - | xanthine dehydrogenase RHA1_ro03495 3700939 - 3702126 + | acyl CoA transferase RHA1_ro03496 3703511 - 3702150 - | glutamyl-tRNA(Gln) amidotransferase subunit A RHA1_ro03497 3703654 - 3704829 + | major facilitator superfamily multidrug resistance protein RHA1_ro03498 3705723 - 3704878 - | hypothetical protein proS1 3707451 - 3705859 - | prolyl-tRNA synthetase RHA1_ro03500 3708226 - 3707519 - | hypothetical protein RHA1_ro03501 3709470 - 3708223 - | hypothetical protein RHA1_ro03502 3709825 - 3709574 - | hypothetical protein RHA1_ro03503 3710266 - 3710523 + | hypothetical protein RHA1_ro03504 3710859 - 3710572 - | hypothetical protein RHA1_ro03505 3711301 - 3710837 - | hypothetical protein RHA1_ro03506 3711581 - 3712039 + | excisionase RHA1_ro03507 3712057 - 3713247 + | hypothetical protein RHA1_ro03508 3714186 - 3713530 - | hypothetical protein RHA1_ro03509 3714221 - 3714883 + | methyltransferase RHA1_ro03510 3715582 - 3714902 - | TetR family transcriptional regulator RHA1_ro03511 3715560 - 3716159 + | hypothetical protein RHA1_ro03512 3717109 - 3716174 - | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro03513 3717308 - 3717793 + | hypothetical protein TERM 1234 3717853 - 3717819 - f 83 -15 -3.29263 | ACAGCCTCCTGACAA CGAGCCCTTGACCCTG ACA CAGTGACAAGGACTCG AATGGTCGGCGAAGG RHA1_ro03514 3717880 - 3718536 + | hypothetical protein TERM 1235 3718975 - 3718950 - g 71 -11.1 -3.61398 | GCCCGCCGTCAACAA GCGATCCTGTC TCAC GACGGGACCGC GTCGCTGCCCGTCGA RHA1_ro03515 3718551 - 3719630 + | transcriptional regulator TERM 1236 3719972 - 3719919 - g 73 -8 -4.1822 | gap 3 GGGCACCGGAAGAAA CTGGGA-CTGCTGCTCGCGGCGG-CGG GTG CCGGCCGCCTCGC-CGGCGGACCCCAG GAGATGGTGGACCGG RHA1_ro03516 3719850 - 3720452 + | hypothetical protein RHA1_ro03517 3720449 - 3720817 + | gas vesicle structural protein RHA1_ro03518 3720911 - 3721333 + | hypothetical protein RHA1_ro03519 3722122 - 3721343 - | hypothetical protein TERM 1237 3722592 - 3722610 + G 70 -8.8 -3.83026 | TCGTGGCCGGGGTGT CCTGGGGT GTG ACCCTGGG TTTGGTCTACGCCCA RHA1_ro03520 3722246 - 3723202 + | prolyl aminopeptidase RHA1_ro03521 3725376 - 3723232 - | helicase RHA1_ro03522 3726610 - 3725378 - | glycosyltransferase TERM 1238 3726422 - 3726377 - G 72 -13.2 -3.14132 | gap 2 CTGGCCGGCGATCAA CTCGGCCGCG-CGCCGG-GGCA GGTC CGCCGCCGACGGCGCGGCCGTC GTCAGCGCGCGCGCC RHA1_ro03523 3726690 - 3726989 + | hypothetical protein TERM 1239 3727626 - 3727652 + G 73 -12.2 -3.46848 | TCGAGCCCGGAGATC CGGGCGGTGGCG CTC CGGCACTGCCTG TTGTCCTACGTTTTC RHA1_ro03524 3727074 - 3727724 + | hypothetical protein TERM 1240 3728062 - 3728084 + G 72 -14.8 -2.82933 | TACGGCTTCACGTTG CGCCGTCCGC TCG GCGGACGGAG TCTCGTGCATTCGGA RHA1_ro03525 3727831 - 3729096 + | hypothetical protein RHA1_ro03526 3729909 - 3729112 - | 1,4-beta-N-acetylmuramidase RHA1_ro03527 3730943 - 3729906 - | guanidinobutyrase TERM 1241 3731348 - 3731321 - g 70 -12.7 -3.34043 | opp_overlap 3731338, overlap 3731324 GGTACGAGCCGACAA CTACCCGCCGA TCAGTT TCGGCGGGGAG CGCATGGCCGAGTTC RHA1_ro03528 3731052 - 3731672 + | transcriptional regulator RHA1_ro03529 3731700 - 3733223 + | amino acid transporter RHA1_ro03530 3733220 - 3734020 + | nitrilase RHA1_ro03531 3734017 - 3735705 + | tryptophan 2-monooxygenase RHA1_ro03532 3737452 - 3735821 - | transposase TERM 1242 3736441 - 3736489 + g 76 -13.9 -3.53091 | gap 3, overlap 3736404 3736400 3736445 ACCGCGAGTCGGGGT CGGTGGTGTTGCGGCGCCGCTGCC CGGC GGCGGCGGCG-CGCT-CACC-CTG TTTGCGGAGGGCGGT TERM 1243 3736445 - 3736486 + g 73 -16.6 -2.60496 | gap 2, overlap 3736400 3736441 CGAGTCGGGGTCGGT GGTGTTGCGGCGCCGCTGCC CGGC GGCGGCGGCG-CGCT-CACC CTGTTTGCGGAGGGC TERM 1244 3737509 - 3737466 - R 100 -15.2 -4.22375 | gap 1, opp_overlap 3737465 3737466, overlap 3737468 3737469 3737471 ACATTATCCAAGAAA CATCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGGAA ATTTGAAACAGCCCC TERM 1245 3737507 - 3737468 - R 100 -20 -3.70709 | gap 1, opp_overlap 3737466 3737465, overlap 3737466 3737469 3737471 ATTATCCAAGAAACA TCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGG AAATTTGAAACAGCC TERM 1246 3737506 - 3737469 - R 100 -23.5 -2.81702 | gap 1, opp_overlap 3737466 3737465, overlap 3737468 3737466 3737471 TTATCCAAGAAACAT CAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCG GAAATTTGAAACAGC TERM 1247 3737504 - 3737471 - R 100 -22.5 -2.94962 | gap 1, opp_overlap 3737466 3737465, overlap 3737469 3737468 3737466 ATCCAAGAAACATCA GGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACC CGGAAATTTGAAACA RHA1_ro03533 3738920 - 3737553 - | hypothetical protein RHA1_ro03534 3739806 - 3738937 - | hypothetical protein RHA1_ro03535 3739939 - 3740145 + | Cu(2+)-exporting ATPase RHA1_ro03536 3740256 - 3741161 + | hypothetical protein RHA1_ro03537 3741161 - 3743431 + | cation transport ATPase RHA1_ro03538 3743428 - 3743757 + | hypothetical protein RHA1_ro03540 3747479 - 3745815 - | pentachlorophenol monooxygenase RHA1_ro03539 3743795 - 3745873 + | copper-exporting ATPase RHA1_ro03541 3748503 - 3747541 - | beta lactamase TERM 1248 3748662 - 3748618 - R 100 -20.9 -3.05384 | gap 1, opp_overlap 3748622, overlap 3748622 3748648 CGCGCCCCGACCGAA CCAACGGGACGCTCG-TGCG ATCTGA CGCAACGAGCGTCCCGTTCG TCGCGGAGGGGGGTG TERM 1249 3748658 - 3748622 - R 100 -20.3 -3.37344 | gap 1, opp_overlap 3748622, overlap 3748618 3748648 CCCCGACCGAACCAA CGGGACGCTCG-TGCG ATCTGA CGCAACGAGCGTCCCG TTCGTCGCGGAGGGG TERM 1250 3748622 - 3748658 + r 100 -20.3 -3.14132 | gap 1, opp_overlap 3748618 3748622 3748648 CCCCGACCGAACCAA CGGGACGCTCG-TGCG ATCTGA CGCAACGAGCGTCCCG TTCGTCGCGGAGGGG RHA1_ro03542 3749779 - 3748706 - | hypothetical protein RHA1_ro03543 3749863 - 3750768 + | LysR family transcriptional regulator TERM 1251 3750827 - 3750791 - T 70 -14.4 -2.60079 | overlap 3750787 TCACCCGAGAATGCA GGTCGCCGCACCGGCG GCGAT CACCAGTGCGATGACC GCGGAACGGAACACC RHA1_ro03544 3751507 - 3750776 - | permease RHA1_ro03545 3752585 - 3751557 - | ethanolamine utilization protein EutD TERM 1252 3752647 - 3752614 - R 100 -28.3 -3.75738 | CATCACTACGAAGAA GGGTGGCGGTCGTCG ATCT CGACGACCGCCACCC GCTGGAACTCGGGGA RHA1_ro03546 3754038 - 3752674 - | hypothetical protein ald1 3754265 - 3755386 + | alanine dehydrogenase RHA1_ro03548 3755490 - 3756959 + | GntR family transcriptional regulator RHA1_ro03549 3757202 - 3758305 + | hypothetical protein RHA1_ro03550 3758321 - 3758944 + | hypothetical protein TERM 1253 3759105 - 3759077 - g 74 -14.6 -3.05343 | gap 1, overlap 3759080 3759081 CGGATACGTGGAACA GAACG-CGCCCGC GATC GCGGGCGCCGTCC GGGAGAACCTCACCC TERM 1254 3759101 - 3759080 - g 74 -12.9 -3.67052 | overlap 3759077 3759081 ATACGTGGAACAGAA CGCGCCCGC GATC GCGGGCGCC GTCCGGGAGAACCTC TERM 1255 3759100 - 3759081 - g 74 -16.4 -2.79749 | overlap 3759080 3759077 TACGTGGAACAGAAC GCGCCCGC GATC GCGGGCGC CGTCCGGGAGAACCT RHA1_ro03551 3758952 - 3759230 + | hypothetical protein RHA1_ro03552 3759738 - 3759412 - | hypothetical protein RHA1_ro03553 3759853 - 3761193 + | Zn-containing alcohol dehdyrogenase RHA1_ro03554 3761219 - 3761782 + | protease RHA1_ro03555 3761779 - 3762192 + | hypothetical protein RHA1_ro03556 3762490 - 3763689 + | low temperature requirement protein A RHA1_ro03557 3763708 - 3763992 + | hypothetical protein RHA1_ro03558 3765809 - 3764199 - | acetyl-CoA hydrolase RHA1_ro03559 3766252 - 3765806 - | hypothetical protein RHA1_ro03560 3766810 - 3766526 - | hypothetical protein RHA1_ro03561 3766838 - 3767875 + | hypothetical protein RHA1_ro03562 3768794 - 3768231 - | hypothetical protein RHA1_ro03563 3769494 - 3768889 - | hypothetical protein TERM 1256 3769498 - 3769480 - G 77 -3.7 -4.72272 | CCCGTCCAGGAAAAA GCGGAAG CTGCC CACCCGC TGCGGATCCCCATCG RHA1_ro03564 3769899 - 3769624 - | hypothetical protein RHA1_ro03565 3770446 - 3769937 - | MerR family transcriptional regulator RHA1_ro03566 3770572 - 3770994 + | heat shock protein RHA1_ro03567 3771031 - 3771375 + | hypothetical protein RHA1_ro03568 3771394 - 3772125 + | DnaJ domain protein RHA1_ro03569 3772466 - 3772161 - | hypothetical protein RHA1_ro03570 3772991 - 3773593 + | hypothetical protein RHA1_ro03571 3774487 - 3773621 - | hypothetical protein RHA1_ro03572 3774572 - 3775450 + | mannan endo-1,4-beta-mannosidase RHA1_ro03573 3775653 - 3776675 + | anti-sigma factor, RsbU RHA1_ro03574 3776687 - 3778639 + | cellulose synthase catalytic subunit RHA1_ro03575 3778636 - 3778974 + | anti-sigma factor antagonist, RsbV RHA1_ro03576 3779078 - 3779380 + | hypothetical protein TERM 1257 3779683 - 3779721 + T 100 -23.9 -3.59979 | GTTTCCGCCGGTAGC CGGAACCCGCCCTCGCC TGATC GGCGGGGACGGGTTCCG TTTCAGCTGAGGCAC RHA1_ro03577 3781352 - 3779748 - | hypothetical protein RHA1_ro03578 3782848 - 3781352 - | SSF family Na(+)/solute symporter RHA1_ro03579 3783102 - 3782845 - | hypothetical protein RHA1_ro03580 3783246 - 3784508 + | hypothetical protein RHA1_ro03581 3785213 - 3784458 - | hypothetical protein TERM 1258 3785369 - 3785318 - R 93 -18.7 -3.21099 | overlap 3785322 CGTCGGTACCAGGAA CGCACG-GGGCGTGGCCCCCGGGCG TGAG CGCC-GGGGGCCACGCGCTCGCAGG GAACGGACTACACGT TERM 1259 3785365 - 3785322 - R 100 -22.5 -2.57795 | overlap 3785318 GGTACCAGGAACGCA CG-GGGCGTGGCCCCCGGGCG TGAG CGCC-GGGGGCCACGCGCTCG CAGGGAACGGACTAC xsc 3787185 - 3785377 - | sulfoacetaldehyde acetyltransferase TERM 1260 3787081 - 3787132 + g 84 -15.8 -3.48276 | opp_overlap 3787114 GATGCCGAACATGTC GGTGACGCCGTTGGCGACCATCGT CTCG ACGAACGCCTCCGACGGCGTCATC TTCTGTACACCGGAG TERM 1261 3787152 - 3787168 + g 75 -9.4 -4.1157 | opp_overlap 3787151 GTACACCGGAGACAG CGGTGC GATCG GCACCG TTCTTCTTCTTGCTC RHA1_ro03583 3787385 - 3788218 + | IclR family transcriptional regulator RHA1_ro03584 3788229 - 3789197 + | cobaltochelatase RHA1_ro03585 3789208 - 3790914 + | cobaltochelatase, CobT RHA1_ro03586 3790959 - 3791642 + | hydrolase TERM 1262 3791648 - 3791694 + T 100 -27.5 -4.07568 | opp_overlap 3791650, overlap 3791650 GCTGGGCTGAAAGAC AACTGTGGGCCGGTTCTGCTG CACGA CAGCGGAACCGGCCCACAGTG TTTTCGGAGGAGCAG TERM 1263 3791692 - 3791650 - T 100 -28.6 -3.81488 | opp_overlap 3791650 3791648 TGGGCTGAAAGACAA CTGTGGGCCGGTTCTGCTGC ACG ACAGCGGAACCGGCCCACAG TGTTTTCGGAGGAGC TERM 1264 3791650 - 3791692 + T 100 -30.1 -3.63744 | opp_overlap 3791650, overlap 3791648 TGGGCTGAAAGACAA CTGTGGGCCGGTTCTGCTG CACGA CAGCGGAACCGGCCCACAG TGTTTTCGGAGGAGC RHA1_ro03587 3792611 - 3791721 - | pyridoxine biosynthesis protein RHA1_ro03588 3794284 - 3792608 - | gamma-aminobutyrate APC transporter RHA1_ro03589 3794736 - 3796208 + | gamma-aminobutyrate APC transporter TERM 1265 3796224 - 3796259 + F 100 -27.8 -2.91582 | opp_overlap 3796227, overlap 3796227 CGCACCCGCCGTACC GAAGGACAGGGACCGC ACCA GCGGTCCCTGTCCTTC TCTGTGCGTCCGATG TERM 1266 3796227 - 3796256 + F 100 -23.7 -3.60525 | opp_overlap 3796227, overlap 3796224 ACCCGCCGTACCGAA GGACAGGGACCGC ACCA GCGGTCCCTGTCC TTCTCTGTGCGTCCG TERM 1267 3796256 - 3796227 - f 100 -23.7 -3.05463 | opp_overlap 3796224 3796227 ACCCGCCGTACCGAA GGACAGGGACCGC ACCA GCGGTCCCTGTCC TTCTCTGTGCGTCCG RHA1_ro03590 3796263 - 3797696 + | hypothetical protein RHA1_ro03591 3797696 - 3798706 + | glutamate binding protein solute binding protein family RHA1_ro03592 3798718 - 3800913 + | serine/threonine-protein kinase RHA1_ro03593 3801185 - 3800928 - | hypothetical protein thiG 3801347 - 3802114 + | thiazole synthase TERM 1268 3802141 - 3802191 + T 100 -21.3 -2.72379 | gap 1 CGAAGCCGGGCCTTC G-GCCCGTGCGCGGTTGACGAG CCCCTGCA CTCGTCAGCCACGCACGGGCGC TACTTGGCCCATTCC RHA1_ro03595 3803207 - 3802191 - | hypothetical protein RHA1_ro03596 3804110 - 3803235 - | chromosome replication initiation inhibitor protein RHA1_ro03597 3804183 - 3804803 + | lysine exporter protein RHA1_ro03598 3805030 - 3805611 + | hypothetical protein RHA1_ro03599 3805611 - 3806015 + | hypothetical protein RHA1_ro03600 3806071 - 3806739 + | short chain dehydrogenase TERM 1269 3806928 - 3806947 + G 74 -15 -3.02263 | overlap 3806927 GTACAGCGACACCGT CGTCGCCG TCGA CGGCGACG TCTTCGCGACGATGT RHA1_ro03601 3806893 - 3807234 + | hypothetical protein RHA1_ro03602 3807927 - 3807238 - | hypothetical protein TERM 1270 3807633 - 3807655 + g 73 -16.2 -2.64155 | overlap 3807631 3807630 CCTCGATCGCCGCGG CCCGCGCGGC CGG GCCGCCCGGG TACATTTCGGGCGCG RHA1_ro03603 3809043 - 3808036 - | epoxide hydrolase TERM 1271 3808785 - 3808756 - G 72 -13.5 -3.14132 | overlap 3808758 GTCGTGGCCGACGAA CACGGCACGCTCG TGAC CGAGCGTGTCGAG CAGGCCGATCAGCGC TERM 1272 3808783 - 3808758 - G 77 -14.7 -3.13403 | overlap 3808756 CGTGGCCGACGAACA CGGCACGCTCG TGAC CGAGCGTGTCG AGCAGGCCGATCAGC RHA1_ro03604 3809165 - 3809920 + | GntR family transcriptional regulator RHA1_ro03605 3810630 - 3809929 - | phosphatase RHA1_ro03606 3811817 - 3810672 - | oxidoreductase RHA1_ro03607 3812005 - 3812814 + | amino terminal protease RHA1_ro03608 3813924 - 3812836 - | hypothetical protein RHA1_ro03609 3814367 - 3813993 - | steroid delta-isomerase RHA1_ro03610 3815934 - 3814525 - | major facilitator superfamily sugar transporter RHA1_ro03611 3816737 - 3816009 - | enoyl-CoA hydratase RHA1_ro03612 3817941 - 3816742 - | butyryl-CoA dehydrogenase TERM 1273 3817827 - 3817843 + g 70 -4.3 -4.42806 | overlap 3817830 TGGTGGCGTGGGATT CGTCGGA AAT TCCGTTG TTTCTTTCGCACTCG TERM 1274 3817830 - 3817840 + g 72 -6.8 -4.32678 | overlap 3817827 TGGCGTGGGATTCGT CGGA AAT TCCG TTGTTTCTTTCGCAC RHA1_ro03613 3820034 - 3817962 - | succinate--CoA ligase (ADP-forming) RHA1_ro03614 3820864 - 3820031 - | short chain dehydrogenase RHA1_ro03615 3821140 - 3821748 + | TetR family transcriptional regulator RHA1_ro03616 3821785 - 3822720 + | drug/metabolite transporter protein RHA1_ro03617 3823179 - 3822724 - | hypothetical protein RHA1_ro03618 3823685 - 3823176 - | hypothetical protein RHA1_ro03619 3824169 - 3823810 - | hypothetical protein TERM 1275 3824233 - 3824182 - R 100 -25.5 -3.55761 | overlap 3824183 3824185 3824220 3824223 CACCCATGTGTCAAA CCACCCGTGAGTACTTGTTAACC GCCGGT GGTTAACAAGTACTCACGGGCGC GCACGCCCAGCGCAG TERM 1276 3824232 - 3824183 - R 100 -29 -2.73243 | overlap 3824182 3824185 3824220 3824223 ACCCATGTGTCAAAC CACCCGTGAGTACTTGTTAACC GCCGGT GGTTAACAAGTACTCACGGGCG CGCACGCCCAGCGCA TERM 1277 3824230 - 3824185 - R 100 -28 -2.91144 | overlap 3824183 3824182 3824220 3824223 CCATGTGTCAAACCA CCCGTGAGTACTTGTTAACC GCCGGT GGTTAACAAGTACTCACGGG CGCGCACGCCCAGCG RHA1_ro03620 3824863 - 3824213 - | hypothetical protein RHA1_ro03621 3825462 - 3824845 - | hypothetical protein leuS 3828361 - 3825524 - | leucyl-tRNA synthetase RHA1_ro03623 3828477 - 3828878 + | hypothetical protein RHA1_ro03624 3828901 - 3829872 + | hypothetical protein RHA1_ro03625 3830582 - 3829905 - | GntR family transcriptional regulator RHA1_ro03626 3830651 - 3831934 + | major facilitator superfamily multidrug resistance protein RHA1_ro03627 3831931 - 3832923 + | hypothetical protein RHA1_ro03628 3832934 - 3833716 + | hypothetical protein RHA1_ro03629 3833898 - 3833704 - | hypothetical protein RHA1_ro03630 3834573 - 3833968 - | hypothetical protein RHA1_ro03631 3835336 - 3834641 - | TetR family transcriptional regulator RHA1_ro03632 3835482 - 3836432 + | hypothetical protein RHA1_ro03633 3836433 - 3837731 + | hypothetical protein RHA1_ro03634 3838150 - 3837740 - | hypothetical protein RHA1_ro03635 3838395 - 3839951 + | hypothetical protein modC 3841052 - 3839973 - | ABC molybdenum transporter, ATP-binding protein RHA1_ro03637 3841855 - 3841049 - | molybdenum ABC transporter permease modA 3842661 - 3841852 - | molybdate transporter, molybdate-binding protein RHA1_ro03639 3843062 - 3842658 - | molybdate ABC molybdate transporter substrate-binding protein RHA1_ro03640 3847284 - 3843148 - | bifunctional reductase TERM 1278 3845621 - 3845658 + g 80 -17.7 -2.87132 | CGGAGGGGGTTGCGG TCGGTGCGGTTGCCGGG CGGG CTCGGCCACTGCACCGG TGTCTCCCGCAGACG RHA1_ro03641 3848980 - 3847529 - | tRNA nucleotidyltransferase RHA1_ro03642 3849097 - 3849705 + | hydrolase RHA1_ro03643 3849708 - 3852098 + | glycoprotein RHA1_ro03644 3852212 - 3856090 + | hypothetical protein RHA1_ro03645 3856138 - 3856719 + | RNA polymerase sigma factor SigM RHA1_ro03646 3856798 - 3857547 + | hypothetical protein RHA1_ro03647 3858123 - 3857551 - | TetR family transcriptional regulator RHA1_ro03648 3858213 - 3859184 + | UDP-glucose 4-epimerase RHA1_ro03649 3859221 - 3860408 + | NADH-dependent flavin oxidoreductase RHA1_ro03650 3860521 - 3861504 + | thioredoxin-disulfide reductase RHA1_ro03651 3861544 - 3861867 + | thioredoxin TERM 1279 3861975 - 3861922 - f 93 -18.4 -3.494 | gap 1, opp_overlap 3861923, overlap 3861923 GAATCTCTGAGACAA TCGATCGATGTGCTCCAGTCGCATC AGCTA GAC-CGACCGGAACACATCGATCGT TTTGTTTGTACCGAG TERM 1280 3861923 - 3861974 + F 100 -15.3 -4.99043 | gap 1, opp_overlap 3861922 3861923 AATCTCTGAGACAAT CGATCGATGTGCTCCAGTCGCATC AGCTA GAC-CGACCGGAACACATCGATCG TTTTGTTTGTACCGA TERM 1281 3861974 - 3861923 - f 100 -21.9 -2.69319 | gap 1, opp_overlap 3861923, overlap 3861922 AATCTCTGAGACAAT CGATCGATGTGCTCCAGTCGCATC AGCTA GAC-CGACCGGAACACATCGATCG TTTTGTTTGTACCGA RHA1_ro03652 3862033 - 3863232 + | N-acetylmuramoyl-L-alanine amidase RHA1_ro03653 3863949 - 3863251 - | hypothetical protein RHA1_ro03654 3865189 - 3864107 - | chromosome partitioning protein parA 3866199 - 3865186 - | chromosome partitioning protein ParA TERM 1282 3866056 - 3866080 + g 70 -12.2 -3.28924 | CGCGGCGGCACCGAT CGGAGTCTCC TCGAC GGAGATTCCG TTGTAGGGGGCCGTG gidB 3866885 - 3866268 - | glucose-inhibited division protein B RHA1_ro03657 3867345 - 3866875 - | hypothetical protein RHA1_ro03658 3867327 - 3867605 + | hypothetical protein RHA1_ro03659 3868066 - 3867608 - | hypothetical protein RHA1_ro03660 3868449 - 3868817 + | hypothetical protein TERM 1283 3869035 - 3869090 + T 90 -16.1 -3.524 | opp_overlap 3869045, overlap 3869045 GGATCGCAACTACGG ATAGCGAGAAGGCGGGGCTCCCGGA GATGAA TCCGGGAGCCCCGCCTTGGTGATGC TTGTGTGGATCAGTC TERM 1284 3869080 - 3869045 - T 100 -27.7 -3.39803 | opp_overlap 3869045 3869035 TACGGATAGCGAGAA GGCGGGGCTCCCGGA GATGAA TCCGGGAGCCCCGCC TTGGTGATGCTTGTG TERM 1285 3869045 - 3869080 + T 100 -27.7 -3.25729 | opp_overlap 3869045, overlap 3869035 TACGGATAGCGAGAA GGCGGGGCTCCCGGA GATGAA TCCGGGAGCCCCGCC TTGGTGATGCTTGTG RHA1_ro03661 3869654 - 3869100 - | RNA-binding protein Jag RHA1_ro03662 3870786 - 3869674 - | putative inner membrane protein translocase component YidC TERM 1286 3869828 - 3869863 + g 87 -4.6 -5.1356 | gap 1, opp_overlap 3869837 3869838, overlap 3869815 TCCGGCTCGTCCGCC GAGGAAGAAC-CGTCCG TTG CGGTCGCGGACTTCTTC TTTTTCTTGGTGAGA RHA1_ro03663 3871156 - 3870791 - | hypothetical protein TERM 1287 3871130 - 3871149 + g 78 -8.6 -4.25283 | gap 1 CTCGGCCGTATCGGC GCGCGACTC GTG GAGT-GCGC TTTTCATGCGGAGGT rnpA 3871530 - 3871153 - | ribonuclease P TERM 1288 3871354 - 3871320 - G 82 -16.5 -3.26545 | gap 1, overlap 3871347 TGCAGATATGACGAA GCCGGCGTGCGACTCG ATGT CGAATCAC-CGCCGGC CCGACAGCCTTACTC rpmH 3871701 - 3871558 - | 50S ribosomal protein L34 dnaA 3872441 - 3874027 + | chromosomal replication initiation protein TERM 1289 3874042 - 3874083 + F 93 -17.4 -3.53444 | gap 1, overlap 3874044 GTCGCCGTCCCGCCA C-TCCTGTGCCCCTGGTAG CTCGC CTACCGGGGGCACAGGTCG TTTCGGGGGAACTGC TERM 1290 3874044 - 3874080 + F 100 -24.6 -2.90496 | overlap 3874042 CGCCGTCCCGCCACT CCTGTGCCCCTGGTAG CTCGC CTACCGGGGGCACAGG TCGTTTCGGGGGAAC TERM 1291 3874122 - 3874179 + F 100 -27.1 -2.78816 | overlap 3874122 GGCAACTCGAGGGGC TCCTCGAGCCGGTCCTCGAGGGTTGGC TCGA GCGGGTCCTCGAGGACCCGCTCGAGGG TCTACTCGAGGCTCG dnaN 3874674 - 3875858 + | DNA polymerase III subunit beta gnd2 3875921 - 3876832 + | 6-phosphogluconate dehydrogenase-like protein recF 3876833 - 3878065 + | recombination protein F RHA1_ro03670 3878055 - 3878621 + | hypothetical protein TERM 1292 3878623 - 3878646 + F 75 -3.8 -4.67943 | gap 1, overlap 3878623 3878625 ACACCTACGGATAGG CC-GGAGCGGA CGT TCGGTTCCTGG TTTTGTCTATTACCC RHA1_ro03671 3878747 - 3879655 + | metal-dependent hydrolase TERM 1293 3880283 - 3880318 + G 72 -6.2 -4.25104 | gap 1, opp_overlap 3880295, overlap 3880284 GGGAGTCGATGCCGT TCCTCGACGAGATCGAA ACA TTCGATCA-GTCAAGGG TTTTCATCCGACCCG RHA1_ro03672 3879652 - 3880770 + | phthalate 4,5-dioxygenase RHA1_ro03673 3880820 - 3881758 + | epoxide hydratase gyrB 3881908 - 3883998 + | DNA gyrase subunit B TERM 1294 3886469 - 3886424 - g 84 -10.3 -4.42639 | gap 1, overlap 3886433 ACAGCGCAAGGAAAA CGGACAGC-AGCCGGCAACCCG CAC CGGACTGCCGACCCGCACCCCG TCCACGCCTCCGCCC RHA1_ro03675 3884424 - 3887249 + | hypothetical protein RHA1_ro03676 3887246 - 3887662 + | hypothetical protein RHA1_ro03677 3887670 - 3888044 + | hypothetical protein RHA1_ro03678 3888229 - 3888609 + | ATP/GTP-binding protein RHA1_ro03679 3888621 - 3889478 + | signalling protein gyrA 3889630 - 3892152 + | DNA gyrase subunit A RHA1_ro03681 3892152 - 3893555 + | proline rich protein TERM 1295 3894008 - 3893971 - f 100 -25.7 -3.70722 | opp_overlap 3893973 GGTACGAATACAGAA CGGTGTGCCCCGGACTC GGAA GAGTCCGGGGCACACTG CTGTGCGGACCAGAG TERM 1296 3893973 - 3894006 + F 100 -26.9 -2.62184 | opp_overlap 3893971 TACGAATACAGAACG GTGTGCCCCGGACTC GGAA GAGTCCGGGGCACAC TGCTGTGCGGACCAG RHA1_ro03684 3894046 - 3894879 + | Fe-utilization protein RHA1_ro03685 3894959 - 3895489 + | hypothetical protein RHA1_ro03686 3895540 - 3896511 + | AraC family transcriptional regulator RHA1_ro03687 3896965 - 3896501 - | hypothetical protein RHA1_ro03688 3897421 - 3898206 + | hypothetical protein RHA1_ro03689 3898732 - 3898172 - | hypothetical protein RHA1_ro03690 3898731 - 3899360 + | peptidylprolyl isomerase TERM 1297 3899430 - 3899382 - g 87 -17.4 -3.25719 | gap 1 GCAGCACATGACCAA CCCCGGCTGGGGCGGTGCCGC GAACGAGG GCA-CTCCGCCCCAGCCGCGG TGCGTCCGCCACCCC RHA1_ro03691 3899374 - 3900291 + | rhomboid family protein RHA1_ro03692 3900737 - 3900285 - | hypothetical protein RHA1_ro03693 3901074 - 3900811 - | putative septation inhibitor protein RHA1_ro03694 3901194 - 3901895 + | hypothetical protein trpG 3901951 - 3902604 + | para-aminobenzoate synthase component II RHA1_ro03696 3904584 - 3902665 - | serine/threonine protein kinase TERM 1298 3903380 - 3903402 + g 82 -11.9 -4.1891 | opp_overlap 3903377 GTGGTGATGACATTG CCGGTCGCC ACGAC GGCGTCCGG TTTCTGTTGCCGGGC TERM 1299 3903582 - 3903592 + g 75 -8.2 -4.13244 | opp_overlap 3903528 3903532, overlap 3903539 GCGCCATCAGCGCCA CCCG CAT CGGG TTCTTCTTCTTGTCG RHA1_ro03697 3905963 - 3904581 - | protein kinase RHA1_ro03698 3907453 - 3905966 - | peptidoglycan glycosyltransferase TERM 1300 3907177 - 3907167 - G 72 -8.2 -3.97947 | opp_overlap 3907167 TGCATCGAGTAGAAA CCGG TGA CCGG TGCGTTGGCCAGCGG RHA1_ro03699 3908904 - 3907450 - | cell division protein RHA1_ro03700 3910364 - 3908904 - | phosphoprotein phosphatase RHA1_ro03701 3910825 - 3910361 - | hypothetical protein TERM 1301 3910931 - 3910892 - gR 77 -15 -2.82516 | TCTCGCAGCATCATA TGGGCAACCCGCACCCTG GGAT CAGGATACGGACAGCCCA CAACGATACGGAGTC RHA1_ro03702 3910805 - 3911125 + | hypothetical protein RHA1_ro03703 3912386 - 3911082 - | hypothetical protein TERM 1302 3912751 - 3912789 + H 100 -19 -4.56597 | overlap 3912754 3912757 TCTTCGGAATCGCGA CATCGAGGCCACGAACTC CAC GAGTTCGTGGCCTTCGTG TTTTTCCCACAAGGA TERM 1303 3912754 - 3912787 + H 100 -20.5 -3.90048 | gap 1, overlap 3912751 3912757 TCGGAATCGCGACAT CG-AGGCCACGAACTC CAC GAGTTCGTGGCCTTCG TGTTTTTCCCACAAG TERM 1304 3912757 - 3912783 + H 100 -21 -3.60925 | overlap 3912754 3912751 GAATCGCGACATCGA GGCCACGAACTC CAC GAGTTCGTGGCC TTCGTGTTTTTCCCA RHA1_ro03705 3912812 - 3913405 + | hypothetical protein RHA1_ro03706 3913460 - 3914113 + | hypothetical protein RHA1_ro03707 3914110 - 3914571 + | hypothetical protein RHA1_ro03708 3914592 - 3915275 + | AraC family transcriptional regulator RHA1_ro03709 3915711 - 3915265 - | mitomycin C resistance protein TERM 1305 3915704 - 3915728 + g 73 -7.8 -4.20516 | CCCGCATTGAAGGTT TCGGACATCG AGCAC CGGAGTCCGA TTTCTTCAATCACCC RHA1_ro03710 3915772 - 3916167 + | hypothetical protein RHA1_ro03711 3917038 - 3916271 - | hypothetical protein RHA1_ro03712 3917715 - 3917035 - | hypothetical protein RHA1_ro03713 3918671 - 3917772 - | glycoprotein RHA1_ro03714 3919988 - 3918960 - | aromatic ring hydroxylase TERM 1306 3919183 - 3919134 - G 72 -14.1 -3.14132 | gap 1 GTCGGCGGTGAGGAA TCGGCCGAGCGCGACCGCGTCGAC GAG GGCCTCGCAGGCGC-CCCGGCCGA GGTTCGGCGCCATCG RHA1_ro03715 3920037 - 3920585 + | TetR family transcriptional regulator RHA1_ro03716 3920868 - 3920593 - | hypothetical protein TERM 1307 3923568 - 3923525 - g 78 -14.4 -3.65046 | opp_overlap 3923545, overlap 3923526 CTTCGAGTTCAAGAA GGGCGTGCGCGAGCCCGTCC CGCT GGACGAGGTCGAGCCCGCCA CCGAGATCGTCAAGC TERM 1308 3923567 - 3923526 - g 78 -17.9 -2.78813 | opp_overlap 3923545, overlap 3923525 TTCGAGTTCAAGAAG GGCGTGCGCGAGCCCGTCC CGCT GGACGAGGTCGAGCCCGCC ACCGAGATCGTCAAG RHA1_ro03717 3920892 - 3925520 + | glutamate synthase large subunit gltD 3925513 - 3926964 + | glutamate synthase subunit beta TERM 1309 3927019 - 3926983 - f 93 -18.8 -3.29461 | gap 1, opp_overlap 3926984, overlap 3926984 TAACTGCTCGTACAA TCCG-CACCCCGGTAGG TTTT CCTACCGGGGTGTCGGT TTATCGTGCGGGGGT TERM 1310 3926984 - 3927018 + F 100 -22.3 -3.96148 | gap 1, opp_overlap 3926983 3926984 AACTGCTCGTACAAT CCG-CACCCCGGTAGG TTTT CCTACCGGGGTGTCGG TTTATCGTGCGGGGG TERM 1311 3927018 - 3926984 - f 100 -22.3 -2.57463 | gap 1, opp_overlap 3926984, overlap 3926983 AACTGCTCGTACAAT CCG-CACCCCGGTAGG TTTT CCTACCGGGGTGTCGG TTTATCGTGCGGGGG RHA1_ro03719 3927146 - 3928060 + | hypothetical protein RHA1_ro03720 3928095 - 3928532 + | hypothetical protein RHA1_ro03721 3929305 - 3928565 - | TetR family transcriptional regulator RHA1_ro03722 3929347 - 3929790 + | hypothetical protein RHA1_ro03723 3930033 - 3930632 + | short chain oxidoreductase RHA1_ro03724 3931550 - 3930642 - | short chain dehydrogenase TERM 1312 3931030 - 3930974 - G 86 -18.6 -3.18849 | gap 1, opp_overlap 3930982 3930997, overlap 3930972 CCGACAGCATGAACA CCGCGGCCTTGCTCGTCGCGTACGCGG TGAG CCGCTTCTGCGGCGTG-AAGGCCGCGG CGGACGACAGGTTGA RHA1_ro03725 3931615 - 3932079 + | hypothetical protein RHA1_ro03726 3932141 - 3932434 + | hypothetical protein RHA1_ro03727 3932446 - 3933141 + | carboxymethylenebutenolidase TERM 1313 3933346 - 3933322 - g 71 -2.8 -4.62069 | gap 2, opp_overlap 3933322 3933325, overlap 3933324 GGGGTACGGCAAAAA GC-G-CCTGACG TGC CGTCCGGTCTGC TTCATGCGCGAGACC RHA1_ro03728 3933209 - 3934852 + | chaperone protein RHA1_ro03729 3934948 - 3936150 + | chaperone protein RHA1_ro03730 3936757 - 3936158 - | hypothetical protein RHA1_ro03731 3937581 - 3936763 - | alpha/beta hydrolase RHA1_ro03732 3938276 - 3937596 - | hypothetical protein lysS 3941617 - 3938273 - | lysyl-tRNA synthetase TERM 1314 3939677 - 3939697 + g 70 -8.9 -3.85698 | ATAGGGATCGATGCC CTGTTCGGC GAG GCCGGCCAG TTTGTCGAGCCGGAC RHA1_ro03734 3941728 - 3941955 + | hypothetical protein RHA1_ro03735 3943301 - 3941946 - | hypothetical protein RHA1_ro03736 3943808 - 3943338 - | ribonuclease activity regulator protein RraA TERM 1315 3944534 - 3944559 + G 71 -11.8 -3.57144 | opp_overlap 3944514 GACGAGGCGTACGCG TCCCGCGCCC ACTTCG GGGCGCCGGA TTTCGAGGTCGCAGG RHA1_ro03737 3943850 - 3944695 + | hypothetical protein RHA1_ro03738 3944732 - 3945409 + | TetR family transcriptional regulator TERM 1316 3945424 - 3945388 - T 93 -18 -3.68222 | opp_overlap 3945384 3945383 CGTCAAGCCGAAGAA GAGGCGCACCGCCGGC GTCTG ACCGGCGATGCGTCTC GGCAGTTTCGGTTGT RHA1_ro03739 3945843 - 3945439 - | hypothetical protein TERM 1317 3945917 - 3945949 + rH 71 -10.6 -3.6682 | opp_overlap 3945944, overlap 3945918 TATCCGCCCCCATTC ACCGTGTGTCCGAA AATAG TTCGAACACACGGC TTTCCGTCGATCACG TERM 1318 3945918 - 3945948 + rH 73 -14.1 -2.79878 | opp_overlap 3945944, overlap 3945917 ATCCGCCCCCATTCA CCGTGTGTCCGAA AATAG TTCGAACACACGG CTTTCCGTCGATCAC RHA1_ro03740 3946883 - 3945978 - | hypothetical protein TERM 1319 3946821 - 3946877 + gH 81 -12.2 -3.82097 | GAGAATCCGGTACAT CTCTTCGTGCTGCGTCTCGGGATCGA GTCGG TCGGTCCGGCGACGTAGATCGAAGCG TTTCATGAGTTTCAC RHA1_ro03741 3946882 - 3947904 + | transcriptional regulator TERM 1320 3947896 - 3947946 + Tr 71 -9.1 -3.75153 | gap 1, overlap 3947865 3947897 3947898 GCCATGCACGGCCGC CACC-CGTGAGTACTTGCCAACCG CGGG CGGTTGACAAGTACTCACAAGCTA TTTCAGTTCGGCGAG TERM 1321 3947897 - 3947944 + Tr 81 -14.2 -3.46068 | overlap 3947865 3947896 3947898 CCATGCACGGCCGCC ACCCGTGAGTACTTGCCAACCG CGGG CGGTTGACAAGTACTCACAAGC TATTTCAGTTCGGCG TERM 1322 3947898 - 3947943 + Tr 84 -17.7 -2.6732 | overlap 3947865 3947897 3947896 CATGCACGGCCGCCA CCCGTGAGTACTTGCCAACCG CGGG CGGTTGACAAGTACTCACAAG CTATTTCAGTTCGGC RHA1_ro03742 3949725 - 3947944 - | acetyl/propionyl-CoA carboxylase alpha subunit TERM 1323 3948003 - 3948022 + g 70 -12.8 -3.33261 | overlap 3947985 CGGGTTCGACGGCGA GGCCGGTG ACGA CGCCGGCC TTGTGGGCGTTGACG TERM 1324 3948076 - 3948090 + g 74 -11.4 -3.70751 | GAGGACGGCGATGAG GTCGCC CTC GGCGAC TTGTTGGCCTTCTTC TERM 1325 3949315 - 3949338 + g 75 -4.5 -4.59109 | gap 1, overlap 3949321 GACGGGGTCCTTGGT GCCGGCGGCC ATCGG GGCC-TTGGC TTTTTCGGCGATGTG RHA1_ro03743 3950051 - 3949752 - | hypothetical protein RHA1_ro03744 3951670 - 3950048 - | propionyl-CoA carboxylase beta subunit TERM 1326 3950567 - 3950584 + g 72 -3.3 -4.57073 | gap 1, overlap 3950567 3950568 GAACGCGTCGCAGGT G-CGCACG AAG CGGGCGGC TTTTTCGGAGGCGTC RHA1_ro03745 3952228 - 3951839 - | hypothetical protein TERM 1327 3952293 - 3952253 - R 100 -18.3 -4.59109 | opp_overlap 3952255, overlap 3952257 GATAGTGCTGAAAAA CGGAGCGAACTCGACGACG GTG CGTCATCGAGTCCGCGCTG TTCCCGTTACCGCTG TERM 1328 3952255 - 3952291 + r 80 -15.1 -3.09492 | opp_overlap 3952253 3952257 TAGTGCTGAAAAACG GAGCGAACTCGACGACG GTG CGTCATCGAGTCCGCGC TGTTCCCGTTACCGC TERM 1329 3952289 - 3952257 - R 100 -20.7 -2.83903 | opp_overlap 3952255, overlap 3952253 GTGCTGAAAAACGGA GCGAACTCGACGACG GTG CGTCATCGAGTCCGC GCTGTTCCCGTTACC RHA1_ro03746 3953061 - 3952300 - | transcriptional regulator RHA1_ro03747 3954951 - 3953101 - | long-chain-fatty-acid--CoA ligase RHA1_ro03748 3956312 - 3955002 - | major facilitator transporter RHA1_ro03749 3956384 - 3957376 + | AraC family transcriptional regulator RHA1_ro03750 3958754 - 3957354 - | hypothetical protein RHA1_ro03751 3959159 - 3958761 - | hypothetical protein RHA1_ro03752 3959325 - 3959732 + | hypothetical protein RHA1_ro03753 3960433 - 3959759 - | hypothetical protein TERM 1330 3960041 - 3960014 - G 72 -8.4 -4.0162 | overlap 3960015 3960017 TTGCGAGAGCAGAAA GTACGTCGTCGC GTAG GCGACGAGGTAG ACCCCCACGGTGACG RHA1_ro03754 3961295 - 3960471 - | hypothetical protein TERM 1331 3962869 - 3962916 + G 77 -14.8 -3.25015 | gap 1 GACGCCATCGAGGCT GCCCATCCCGGGCTGCTCAC-CG GGC TGCGCGAGCATCCCGGGGTCGGC TTCCTGCTCGTTGCC RHA1_ro03755 3961309 - 3963318 + | hypothetical protein TERM 1332 3963593 - 3963617 + G 72 -13.5 -3.23216 | GGTGCCCGTGCTGTT CGCCGGGGTGC TGG GCACCGTGGCG TTGCTCATCGTGGGG RHA1_ro03756 3963390 - 3964838 + | diacylglycerol kinase, catalytic region RHA1_ro03757 3966558 - 3964843 - | SulP family sulfate transporter RHA1_ro03758 3969328 - 3966569 - | cation transport ATPase TERM 1333 3967141 - 3967127 - G 71 -10 -3.72324 | overlap 3967138 CAGCGTGATGAAGAA GTGCTG GAA CAGCAC CATCAGCGGGGTGAG RHA1_ro03759 3970198 - 3969356 - | hypothetical protein RHA1_ro03760 3970619 - 3970221 - | hypothetical protein TERM 1334 3970735 - 3970747 + H 77 -4.7 -4.61231 | GGATATTTGATTCAT CCCAG ACT CAGGG TTTTTCACGGTCTGA RHA1_ro03761 3970835 - 3971062 + | hypothetical protein RHA1_ro03762 3971144 - 3971593 + | hypothetical protein RHA1_ro03763 3971656 - 3972033 + | hypothetical protein RHA1_ro03764 3973774 - 3972380 - | diacylglycerol kinase, catalytic region RHA1_ro03765 3975198 - 3973771 - | hypothetical protein TERM 1335 3973856 - 3973884 + g 73 -9.5 -3.88291 | CGGGCGTTCTGGTCG GCGTAGGCCTC GGCGAAG GAGGCCAGCGC TTTATCGAAGTCGTC RHA1_ro03766 3976328 - 3975195 - | hypothetical protein RHA1_ro03767 3976795 - 3979191 + | ATP-dependent transcriptional regulator RHA1_ro03768 3979188 - 3980441 + | CPA1 family Na(+)/H(+) antiporter RHA1_ro03769 3980552 - 3980824 + | hypothetical protein RHA1_ro03770 3981582 - 3981052 - | hypothetical protein RHA1_ro03771 3982885 - 3981890 - | 3-hydroxybutyryl-CoA dehydrogenase RHA1_ro03772 3983842 - 3982910 - | hypothetical protein RHA1_ro03773 3985404 - 3983857 - | flavin binding monooxygenase RHA1_ro03774 3985525 - 3986733 + | hypothetical protein RHA1_ro03775 3986924 - 3988627 + | hypothetical protein phaD 3989463 - 3988648 - | poly(3-hydroxyalkanoic acid) depolymerase RHA1_ro03777 3989927 - 3989475 - | nodulation protein phaC1 3991651 - 3989954 - | poly(3-hydroxyalkanoate) synthetase RHA1_ro03779 3993239 - 3991668 - | long-chain-fatty-acid--CoA ligase pcaJ2 3993923 - 3993276 - | 3-oxoacid Co-A transferase beta subunit pcaI1 3994683 - 3993925 - | 3-oxoacid CoA-transferase alpha subunit RHA1_ro03782 3995288 - 3994680 - | hypothetical protein RHA1_ro03783 3996647 - 3995316 - | major facilitator transporter TERM 1336 3996564 - 3996601 + g 78 -16.3 -3.04792 | gap 1, opp_overlap 3996551 3996564 GATCCAGGGGTAGAA CCGCGACCGGGAG-GCCG GAG CGGTGCTCCCGGTGGTGG TATTCGGGGTGGTGG RHA1_ro03784 3997821 - 3996769 - | hypothetical protein RHA1_ro03785 3998785 - 3997871 - | taurine dioxygenase RHA1_ro03786 3999880 - 3998822 - | quinone oxidoreductase TERM 1337 3999709 - 3999737 + g 70 -12.3 -3.28924 | GCCGGATCCGGACCC CGTGGGGGCCGGG CTC CCCGACCTCGACG TTCTCCCACCGCATG TERM 1338 4000729 - 4000752 + G 74 -13.8 -3.30441 | CGGACGGTGCATCGC CGCCTCGCCG AGAG CGGCGAGACG TTCTCGACCGTCCTG RHA1_ro03787 3999934 - 4000944 + | AraC family transcriptional regulator RHA1_ro03788 4001507 - 4000920 - | aminoglycoside N(6prime)-acetyltransferase RHA1_ro03789 4001699 - 4003060 + | anion/cation symporter RHA1_ro03790 4003110 - 4004705 + | aldehyde dehydrogenase (NAD+) RHA1_ro03791 4004731 - 4005666 + | 5-dehydro-4-deoxyglucarate dehydratase RHA1_ro03792 4005666 - 4006937 + | glucarate dehydratase TERM 1339 4006937 - 4006994 + F 76 -14.3 -3.05384 | gap 2, opp_overlap 4006951, overlap 4006939 CTGCCCTCGCTGGTA ACTGTCTCACC--GAAGGCGCCGACCG CGGTCT CGGTCGGCGCCTTCGGGGTGGGATACA TTGAGTCCACCCCGA TERM 1340 4006939 - 4006990 + F 100 -22.3 -2.54896 | opp_overlap 4006951, overlap 4006937 GCCCTCGCTGGTAAC TGTCTCACCGAAGGCGCCGACCG CGGTCT CGGTCGGCGCCTTCGGGGTGGGA TACATTGAGTCCACC TERM 1341 4006978 - 4006951 - f 100 -19.9 -3.05715 | opp_overlap 4006939 4006937 AACTGTCTCACCGAA GGCGCCGACCG CGGTCT CGGTCGGCGCC TTCGGGGTGGGATAC RHA1_ro03793 4007028 - 4007921 + | LysR family transcriptional regulator RHA1_ro03794 4008383 - 4007934 - | hypothetical protein RHA1_ro03795 4009450 - 4008482 - | esterase RHA1_ro03796 4009689 - 4009459 - | hypothetical protein RHA1_ro03797 4009714 - 4009998 + | hypothetical protein RHA1_ro03798 4010309 - 4009995 - | hypothetical protein TERM 1342 4010289 - 4010301 + g 77 -3.4 -4.78107 | overlap 4010286 4010283 CACGACTGCCGATCG CACA GCGAA TGTG TTTTTCATAATACTC TERM 1343 4010439 - 4010473 + r 87 -17.2 -2.81133 | CCCCTGTTCAGGGTG TGGATTCTCGGCTGCC GGT GGGAGCCGAGAATCCC TGTCCTGGATCACTC RHA1_ro03799 4011230 - 4010700 - | hypothetical protein RHA1_ro03800 4011726 - 4011256 - | phosphinothricin N-acetyltransferase RHA1_ro03801 4012217 - 4013509 + | flavin binding monooxygenase RHA1_ro03802 4013670 - 4014596 + | ABC drug resistance transporter, ATP-binding component RHA1_ro03803 4014593 - 4015399 + | ABC drug resistance transporter, permease component TERM 1344 4015450 - 4015404 - f 100 -23 -3.62046 | opp_overlap 4015409, overlap 4015409 GCACCCGCTGAACAA CGAACCCGCCCTGCCCATCCCA CAA CGGGAGGGGCAGGGCGGTTTGG TGTGTGCCCTCCTGG TERM 1345 4015409 - 4015445 + F 100 -25.2 -3.88766 | opp_overlap 4015409 4015404 CGCTGAACAACGAAC CCGCCCTGCCCATCCC ACAAC GGGAGGGGCAGGGCGG TTTGGTGTGTGCCCT TERM 1346 4015445 - 4015409 - f 100 -25.9 -2.71745 | opp_overlap 4015409, overlap 4015404 CGCTGAACAACGAAC CCGCCCTGCCCATCCCA CAA CGGGAGGGGCAGGGCGG TTTGGTGTGTGCCCT RHA1_ro03804 4015527 - 4015796 + | hypothetical protein RHA1_ro03805 4015870 - 4016499 + | sigma factor, sigma 70 type, group 4 (ECF) TERM 1347 4016604 - 4016558 - T 100 -23 -3.31263 | opp_overlap 4016563 AGGTCACGCTGACAA GACTGCGGTGCGGCGCGAGCCA TCT TCGCTCGCACCGCACCGTTGTC ACCTGAGGGCTACTG TERM 1348 4016563 - 4016599 + T 100 -22.3 -3.32844 | opp_overlap 4016558 ACGCTGACAAGACTG CGGTGCGGCGCGAGCCA TCT TCGCTCGCACCGCACCG TTGTCACCTGAGGGC RHA1_ro03806 4017183 - 4016614 - | hypothetical protein TERM 1349 4017303 - 4017324 + H 70 -11.7 -3.41125 | opp_overlap 4017307 CGAAGGGGCCTTGCA CATACAACC AATC GGTTGTATG TTCTGGGTGTGTCAG RHA1_ro03807 4017333 - 4017674 + | ArsR family transcriptional regulator RHA1_ro03808 4017678 - 4018163 + | hypothetical protein TERM 1350 4018225 - 4018189 - f 89 -19.4 -2.52896 | TCACCGCGCAACCGA TCTCGCCGCCTCGCTC TCCAC GCGCGAGGCGGCGAGC CGGAACGGAGGACGC RHA1_ro03809 4018248 - 4018931 + | hypothetical protein RHA1_ro03810 4019162 - 4019923 + | hypothetical protein RHA1_ro03811 4021465 - 4019996 - | carboxylesterase RHA1_ro03812 4021940 - 4022230 + | hypothetical protein RHA1_ro03813 4023071 - 4022412 - | hypothetical protein RHA1_ro03814 4024161 - 4023313 - | carveol dehydrogenase RHA1_ro03815 4024691 - 4024161 - | hypothetical protein RHA1_ro03816 4024932 - 4025828 + | LysR family transcriptional regulator RHA1_ro03817 4027027 - 4026002 - | glutamine ABC transporter substrate-binding protein TERM 1351 4026248 - 4026266 + g 86 -5.8 -4.88736 | overlap 4026248 GAGCGAGTCGGAGGT GCTGACCG CGT CGGCCTGC TTTTTCTGCATGGTG RHA1_ro03818 4028475 - 4027027 - | hypothetical protein TERM 1352 4027317 - 4027344 + g 74 -11.2 -3.71848 | gap 1 GCGCGGCCAGCCAGC CGTCGCG-GGCCG TCA CGGCCTCGCGGAG TTGTTGCTCGGCGGC TERM 1353 4027733 - 4027701 - G 73 -7.5 -4.11216 | overlap 4027702 GGGCGAGGGCGAAAA GTGCGGCCGCGGTCA CCG TGAAGGCGGCCGCGG GCAGCTGGGCCGTGT RHA1_ro03819 4028559 - 4029347 + | hypothetical protein RHA1_ro03820 4029420 - 4029821 + | hypothetical protein TERM 1354 4029990 - 4030002 + G 83 -4.7 -4.83615 | opp_overlap 4029977 4029991, overlap 4029991 ATGGCTTGGTCGACA ACCCC TCA GGGGC TTTTTCTCGCCGCTG RHA1_ro03821 4029951 - 4030256 + | hypothetical protein RHA1_ro03822 4030759 - 4031922 + | oxidoreductase RHA1_ro03823 4032009 - 4032476 + | hypothetical protein RHA1_ro03824 4033939 - 4032533 - | guanine deaminase TERM 1355 4033236 - 4033265 + g 71 -2.2 -4.61231 | gap 2, overlap 4033234 4033232 4033235 4033236 ACGTACACACCGCGG TC-C-CGGACCTCT TCGT AGAGGTCCCCGAGA TTTTTCAGGGTCTCG RHA1_ro03825 4035038 - 4034142 - | hypothetical protein RHA1_ro03826 4035067 - 4036296 + | cytochrome P450 CYP124 RHA1_ro03827 4037001 - 4036300 - | ubiquinone/menaquinone methyltransferase RHA1_ro03828 4037751 - 4037293 - | hypothetical protein TERM 1356 4037928 - 4037889 - R 84 -15 -3.30124 | opp_overlap 4037887 4037890, overlap 4037890 GGTCACCGGTGACAA CGGCCTGGAAGGGCACTC TGTC GAGTGCCCTTCCGAGGCA TGACTTCTGGACCAT TERM 1357 4037928 - 4037890 - R 86 -18.3 -2.57931 | gap 1, opp_overlap 4037887 4037890, overlap 4037889 GTCACCGGTGACAAC GGCCT-GGAAGGGCACTC TGTC GAGTGCCCTTCCGAGGCA TGACTTCTGGACCAT TERM 1358 4037890 - 4037928 + r 86 -18.3 -2.5955 | gap 1, opp_overlap 4037889 4037890, overlap 4037887 GTCACCGGTGACAAC GGCCT-GGAAGGGCACTC TGTC GAGTGCCCTTCCGAGGCA TGACTTCTGGACCAT RHA1_ro03829 4038268 - 4037963 - | hypothetical protein RHA1_ro03830 4038620 - 4038387 - | hypothetical protein RHA1_ro03831 4039325 - 4038624 - | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro03832 4039357 - 4039776 + | hypothetical protein RHA1_ro03833 4039757 - 4040197 + | transcriptional regulator RHA1_ro03834 4040211 - 4040624 + | glyoxalase family protein TERM 1359 4042068 - 4042014 - g 82 -15.7 -3.40403 | gap 2, opp_overlap 4042038 GGTCGTGGAGCACAA GCCGGAG-GCGAT-CGCGATCGCCGAC CAC GTCGTCGACCTCGGACCGCGCGCCGGC ACCGAGGGTGGCCAG TERM 1360 4042980 - 4043014 + G 74 -15.6 -3.01712 | CTGGATCATCGACCT CGGTCCGGGCGCCGGC CAC GACGGTGGCCGGATCG TGTTCGAGGGCAGGC uvrA2 4040677 - 4043097 + | UvrABC system protein A TERM 1361 4043119 - 4043146 + F 90 -16.2 -3.6715 | CGCTCGTCGAGATGT GCCCCCGGTTGC CACG GCCGCCGGGGGC TTTCGCGTTCGGTGG TERM 1362 4043759 - 4043798 + G 70 -12.8 -3.38072 | gap 1, opp_overlap 4043732 GGAGCACGACCAGCC CGGCGTGATCACCG-CGAC CCG GGCGTCGCTGACCACGCCG TTGCTCTTCGATCCG RHA1_ro03836 4043310 - 4044503 + | beta-lactamase RHA1_ro03837 4044597 - 4045022 + | hypothetical protein RHA1_ro03838 4046364 - 4045039 - | sigma factor, includes region 2 TERM 1363 4046035 - 4046075 + gT 71 -14.1 -2.78384 | gap 2 CCCGCTGCCCGAGAC GG--CGCCGCCCTCGCTCA GGTCG TGAGCGAGGACGGCGTACC TCTCGTCGAGGGCGG RHA1_ro03839 4046804 - 4046337 - | DGPF domain-containing protein TERM 1364 4046872 - 4046894 + r 84 -14.1 -3.68351 | opp_overlap 4046866 TCGAACCTATCGCGC CCGGCCGGC TCGGC GCCGGTCGG TTTCGGTGGTGCCGC RHA1_ro03840 4047192 - 4046863 - | WhiB family transcriptional regulator RHA1_ro03841 4047984 - 4047211 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1365 4049539 - 4049506 - g 78 -15.9 -3.07816 | gap 1 TGGGGACCCACCGAA CGGCGCCTCGCCGCCG AGG CTGCGGCGCG-CGCCG ATTCCAAAAGCGTCG RHA1_ro03842 4048222 - 4049613 + | major facilitator transporter RHA1_ro03843 4049697 - 4050497 + | transketolase RHA1_ro03844 4050499 - 4051491 + | transketolase, C-terminal subunit RHA1_ro03845 4051608 - 4052258 + | GntR family transcriptional regulator RHA1_ro03846 4053435 - 4052326 - | isopenicillin-N N-acyltransferase TERM 1366 4054230 - 4054189 - g 70 -12.1 -3.29381 | overlap 4054182 4054180 GGAGAAGATCACCAA CCCGCGCCACGAGCGCACG GGAT CGTGCGCGGTTGGCGAAGG CGCAACGAGCACTCG RHA1_ro03847 4053488 - 4054714 + | transposase RHA1_ro03848 4055089 - 4054784 - | purine-cytosine permease and related protein, C-terminal RHA1_ro03849 4056054 - 4055086 - | allantoin transporter TERM 1367 4055968 - 4056015 + g 82 -8.3 -4.42653 | gap 1, overlap 4055967 4055959 4055960 4055970 CTCCACCCGCCCGGC GC-GATCGGCCCGCGGTGTTTC GCCGG GCGTCACCGCGCGCGGATCTGC TTTTGTCGATGCCAT RHA1_ro03850 4056195 - 4057214 + | LacI family transcription regulator TERM 1368 4057285 - 4057235 - T 100 -24.8 -3.58343 | overlap 4057236 4057239 CCGAGGACGGCGAAA TGCACGTGCTCGCCGGCGCACC GGTCGGT GATGCGCCGGCGAGCACGTTCG GCCGGATCAGAACAA TERM 1369 4057284 - 4057236 - T 100 -28.3 -2.74792 | overlap 4057235 4057239 CGAGGACGGCGAAAT GCACGTGCTCGCCGGCGCACC GGTCGGT GATGCGCCGGCGAGCACGTTC GGCCGGATCAGAACA TERM 1370 4057281 - 4057239 - T 100 -28.6 -2.64803 | overlap 4057236 4057235 GGACGGCGAAATGCA CGTGCTCGCCGGCGCACC GGTCGGT GATGCGCCGGCGAGCACG TTCGGCCGGATCAGA RHA1_ro03851 4057816 - 4057292 - | flavin reductase TERM 1371 4057619 - 4057595 - G 72 -13.5 -3.16475 | GACGGACACAGCGAA CGAGCCCGCGG CTT CCACGGCCTCG GTGGTGCGGGAGCCG RHA1_ro03852 4058171 - 4057824 - | hypothetical protein RHA1_ro03853 4059635 - 4058178 - | aromatic ring hydroxylase RHA1_ro03854 4060314 - 4059637 - | hypothetical protein RHA1_ro03855 4061123 - 4060311 - | nitrilase RHA1_ro03856 4061785 - 4061141 - | GntR family transcriptional regulator RHA1_ro03857 4063174 - 4061807 - | major facilitator transporter TERM 1372 4063273 - 4063310 + H 100 -13.4 -5.13741 | overlap 4063274 4063275 CGCAGATGGTGCTGC CTGGGCTCGGTGGCTG CTCCAA CAGCTGCCGAGCCCGC TTTTTCTTGCCTTCA TERM 1373 4063274 - 4063309 + H 91 -16.9 -3.6716 | overlap 4063273 4063275 GCAGATGGTGCTGCC TGGGCTCGGTGGCTG CTCCAA CAGCTGCCGAGCCCG CTTTTTCTTGCCTTC TERM 1374 4063275 - 4063308 + H 89 -18.2 -2.79212 | overlap 4063274 4063273 CAGATGGTGCTGCCT GGGCTCGGTGGCTG CTCCAA CAGCTGCCGAGCCC GCTTTTTCTTGCCTT RHA1_ro03858 4063536 - 4065116 + | metal-dependent amidohydrolase RHA1_ro03859 4065755 - 4065126 - | tetracycline repressor TERM 1375 4065649 - 4065667 + g 70 -12.4 -3.32963 | opp_overlap 4065626 ACCTGCACGTTCAGG TGCCGGGC GAG GTCCGGCA TTCTGAAGTCGCCGT TERM 1376 4066468 - 4066500 + G 78 -16.9 -3.05384 | GCCGCCGTCCTTCTC CGGGGCGGCGCCGAG GGG CTCGGCGCCGAGTCG TTCGCTCCCGCCCAC RHA1_ro03860 4065919 - 4067424 + | amino acid transporter RHA1_ro03861 4067427 - 4067732 + | hypothetical protein RHA1_ro03862 4067756 - 4068325 + | transcriptional regulator TERM 1377 4068624 - 4068653 + G 70 -12.1 -3.29273 | gap 1, overlap 4068623 CGGCGGCGGCGTCGC GGCGCTCCGG-CTC GCG GAGGCCGGCGTGCC TGTTCTGGTGCTCGA RHA1_ro03863 4068451 - 4070040 + | cholesterol oxidase RHA1_ro03864 4070043 - 4070303 + | hypothetical protein TERM 1378 4070604 - 4070549 - T 100 -27.7 -3.04144 | gap 1 CTTCGATCGCGAAGA CGACGCGACGCCAGGGTGGTCACGGC ACGAG GCCGCGACCACCCTGGCG-CTCACCG AGGGTGCGTCAGAGC RHA1_ro03865 4071695 - 4070613 - | catechol 2,3-dioxygenase RHA1_ro03866 4071918 - 4072796 + | acetaldehyde dehydrogenase RHA1_ro03867 4072793 - 4073824 + | 4-hydroxy-2-ketovalerate aldolase TERM 1379 4073819 - 4073802 - f 73 -14.1 -2.80816 | GCCGCACCTACGAGA CCCCGGC CCCG GCCGGGG TCTGACAGGCAAGGA RHA1_ro03868 4073840 - 4075318 + | aminomuconate-semialdehyde dehydrogenase TERM 1380 4075333 - 4075368 + F 93 -19 -3.01712 | opp_overlap 4075324, overlap 4075336 ATCGAACTCGTCCAC CAGTGGCCGGGGCGGT ACCC ACCGTCCCGGCCATCG TCTTCCCGAACCGAG TERM 1381 4075336 - 4075365 + F 100 -21.5 -2.73875 | opp_overlap 4075324, overlap 4075333 GAACTCGTCCACCAG TGGCCGGGGCGGT ACCC ACCGTCCCGGCCA TCGTCTTCCCGAACC RHA1_ro03869 4075396 - 4076148 + | short chain dehydrogenase RHA1_ro03870 4076175 - 4076594 + | 4-oxalocrotonate tautomerase TERM 1382 4076648 - 4076609 - T 100 -21.4 -3.02649 | opp_overlap 4076602 AGTGCACCACACATA CGTATGGGCGGCCGCGAC ATTC GTCACGGCCGCCCAGCCG TCGGCACTCGGTTCA RHA1_ro03871 4077191 - 4076661 - | NADH:flavin mononucleotide oxidoreductase RHA1_ro03872 4078781 - 4077219 - | aromatic ring hydroxylase TERM 1383 4079796 - 4079758 - g 86 -22.4 -2.53911 | TCAATGCGGAAGGCA CCACGACGCGGGCCTGGC TGT ACCAGGCCCGCCTCGAGG CTGCGCGAAAGTACC RHA1_ro03873 4078947 - 4079954 + | AraC family transcriptional regulator RHA1_ro03874 4080339 - 4079977 - | hypothetical protein TERM 1384 4080193 - 4080216 + g 100 -13.9 -4.40804 | TCGGACGACCCCGGG CACCTGCCG GACCAG CGGCAGGTG TTTTGTGGCGTAGTA RHA1_ro03875 4081364 - 4080336 - | phenol hydrolase RHA1_ro03876 4082582 - 4081368 - | cytochrome P450 CYP255 TERM 1385 4083227 - 4083245 + G 70 -4.4 -4.4648 | overlap 4083215 4083228 CCGGGCAGACCGGGA TGGGCGGC CTC GTCTCCCG TTTTCTCGTCGACAT RHA1_ro03877 4082707 - 4083729 + | AraC family transcriptional regulator RHA1_ro03878 4085034 - 4083742 - | butyryl-CoA dehydrogenase RHA1_ro03879 4085337 - 4085101 - | 4-oxalocrotonate tautomerase RHA1_ro03880 4086128 - 4085337 - | 4-oxalocrotonate decarboxylase RHA1_ro03881 4086943 - 4086128 - | 2-oxopent-4-enoate hydratase RHA1_ro03882 4087786 - 4086971 - | IclR family transcriptional regulator TERM 1386 4087370 - 4087427 + g 74 -13.3 -3.35679 | gap 1, overlap 4087373 CAGGAGGACCTTGCC CACCGCTGTGCAGTGTGCTTCGAGACGG GCG CCGACGCGT-GCACCCTGCACGGTGATG TTGTGCGTACCGACC RHA1_ro03883 4088250 - 4087975 - | exodeoxyribonuclease III, C-terminal RHA1_ro03884 4088252 - 4088476 + | hypothetical protein frcK 4088463 - 4089212 + | putative fructose transport system kinase RHA1_ro03886 4090220 - 4089219 - | inositol 2-dehydrogenase RHA1_ro03887 4091406 - 4090222 - | inositol 2-dehydrogenase RHA1_ro03888 4091774 - 4091415 - | universal stress protein RHA1_ro03889 4093230 - 4091812 - | major facilitator superfamily sugar transporter TERM 1387 4093571 - 4093602 + G 77 -10.9 -3.87815 | gap 2 CGCGGGGAGGGCTGG TCGG-GCGC-GCCTG GTTG CGGGCGGCGCACCGA TTTCTCGACCTGCAA RHA1_ro03890 4093408 - 4094046 + | hypothetical protein RHA1_ro03891 4094043 - 4094705 + | enoyl-CoA hydratase RHA1_ro03892 4095941 - 4094742 - | acetyl-CoA acetyltransferase pcaJ3 4096636 - 4095974 - | 3-oxoacid CoA-transferase beta subunit TERM 1388 4096384 - 4096407 + g 70 -8.8 -3.90291 | gap 1, opp_overlap 4096383 CGGAGTCGAAGAATG CGG-CACCGGC GTT GACGGTGACCG TTTCCTTGCCGGCGT pcaI2 4097406 - 4096633 - | 3-oxoacid CoA-transferase alpha subunit TERM 1389 4097015 - 4096979 - G 74 -15.7 -3.06183 | GCGAGGGCGACGGAA CCGTCGGCGGCGTACCG CCA CGGCAGTCCGCCGTCGG CGACGGGACTTCCCA RHA1_ro03895 4097598 - 4098380 + | IclR family transcriptional regulator RHA1_ro03896 4098862 - 4098623 - | hypothetical protein TERM 1390 4099012 - 4098983 - R 100 -20.1 -4.09805 | opp_overlap 4098983, overlap 4098958 GCATTAACAACGAAA CACCCCGTCATCC GGGT GGATGACGGGGCG TGTGGTGCGGGTGGG TERM 1391 4098983 - 4099012 + r 87 -17.9 -2.79183 | opp_overlap 4098958 4098983 GCATTAACAACGAAA CACCCCGTCATCC GGGT GGATGACGGGGCG TGTGGTGCGGGTGGG RHA1_ro03897 4099583 - 4099029 - | hypothetical protein RHA1_ro03898 4100183 - 4099707 - | hypothetical protein RHA1_ro03899 4100680 - 4100201 - | MarR family transcriptional regulator RHA1_ro03900 4100763 - 4101272 + | hypothetical protein RHA1_ro03901 4101325 - 4102113 + | hypothetical protein RHA1_ro03902 4104784 - 4102076 - | alpha-L-rhamnosidase TERM 1392 4103415 - 4103437 + g 90 -13.4 -4.07885 | opp_overlap 4103415, overlap 4103429 GCGTTGCCGCGGAAA CTCCACACCG CGG CGGCGTGGAG TTTTGCGAGACGATC TERM 1393 4103437 - 4103415 - G 82 -15.6 -3.53012 | opp_overlap 4103415 4103429 GCGTTGCCGCGGAAA CTCCACACCG CGG CGGCGTGGAG TTTTGCGAGACGATC RHA1_ro03903 4106064 - 4104781 - | major facilitator transporter TERM 1394 4104835 - 4104807 - G 71 -10.1 -3.71552 | ACCGCACGAAGAGAA CGGCTGCCCCGGC GAC GGCGGCGCAGGCG GCCAGGATGCAGAAC TERM 1395 4106156 - 4106169 + G 72 -5.9 -4.27316 | opp_overlap 4106156 CACCGTACACGAAAA CCGGG TTCA TCCGG TTTTCAATTCGAGAA RHA1_ro03904 4106133 - 4106882 + | TetR family transcriptional regulator RHA1_ro03905 4106956 - 4107900 + | esterase RHA1_ro03906 4107897 - 4108967 + | hypothetical protein RHA1_ro03907 4109019 - 4109696 + | GntR family transcriptional regulator RHA1_ro03908 4109832 - 4111109 + | aromatic acid symporter RHA1_ro03909 4111151 - 4111996 + | fumarylacetoacetate hydrolase RHA1_ro03910 4111993 - 4113627 + | hypothetical protein RHA1_ro03911 4113682 - 4114815 + | hypothetical protein RHA1_ro03912 4114971 - 4115555 + | hypothetical protein RHA1_ro03913 4116009 - 4116977 + | catechol 1,2-dioxygenase RHA1_ro03914 4117609 - 4117004 - | hypothetical protein RHA1_ro03915 4118650 - 4117748 - | LysR family transcriptional regulator RHA1_ro03916 4118725 - 4119681 + | hypothetical protein RHA1_ro03917 4120753 - 4119707 - | GGDEF domain-containing protein RHA1_ro03918 4121722 - 4120823 - | formamidase RHA1_ro03919 4123232 - 4121727 - | amino acid transporter RHA1_ro03920 4123361 - 4123957 + | transcriptional regulator RHA1_ro03921 4123991 - 4124368 + | hypothetical protein RHA1_ro03922 4124786 - 4124397 - | hypothetical protein TERM 1396 4125120 - 4125156 + r 100 -29.7 -2.82635 | overlap 4125093 GCGTCCGCCGGACAG CGTTGTGGCCCATGACC TGG GGTCATGGGCCACAACG TGTCGTCCTGCGGGT RHA1_ro03923 4126231 - 4125176 - | NADPH dehydrogenase RHA1_ro03924 4126866 - 4126411 - | hypothetical protein RHA1_ro03925 4127236 - 4126931 - | hypothetical protein RHA1_ro03926 4127672 - 4127277 - | universal stress protein RHA1_ro03927 4128673 - 4127669 - | D-3-phosphoglycerate dehydrogenase TERM 1397 4129383 - 4129412 + G 79 -15.7 -3.36878 | overlap 4129380 GTCACGTTCAGCGAC GGCAGCGTCTTCG ATGC CGAGGACGCCGCC TTCTCGATCGATCGC RHA1_ro03928 4129077 - 4130609 + | ABC dipeptide transporter, substrate-binding component RHA1_ro03929 4130678 - 4131604 + | ABC dipeptide transporter, permease component RHA1_ro03930 4131617 - 4132645 + | ABC dipeptide transporter, permease component RHA1_ro03931 4132642 - 4133670 + | ABC dipeptide transporter, ATP-binding component RHA1_ro03932 4133663 - 4134673 + | ABC oligopeptide transporter, ATP-binding protein RHA1_ro03933 4134670 - 4135386 + | hypothetical protein RHA1_ro03934 4135507 - 4136844 + | glucarate dehydratase RHA1_ro03935 4137433 - 4137819 + | glycerate dehydrogenase TERM 1398 4139040 - 4139022 - T 76 -9.6 -4.07568 | overlap 4139026 CGTCGTTTGTGAAAA CTCACAGC TCA ACTGTGAG CCTGCAGGCGATACG RHA1_ro03937 4140301 - 4140029 - | hypothetical protein TERM 1399 4140210 - 4140229 + g 81 -2 -4.95758 | overlap 4140213 TCAAACCGCAGGAGG GTGTGCCC GTGA GGGTGTGC TTTTTCTGGTCTGGT TERM 1400 4142336 - 4142325 - R 74 -2.2 -4.7254 | ACTGTTTACTAAAAA CACA GGTC CGTG CGAAGTCGTAAGACG TERM 1401 4143544 - 4143505 - R 100 -18.8 -4.49353 | gap 1, opp_overlap 4143508 4143509 TCAGAACAGAAGAAA GAAG-CACACCCCACCACC CAC GGTGATGGGATGTGTCTTC GCTGATGTTCCGTGT TERM 1402 4143509 - 4143539 + r 76 -14 -3.12482 | opp_overlap 4143505, overlap 4143508 AACAGAAGAAAGAAG CACACCCCACCACC CAC GGTGATGGGATGTG TCTTCGCTGATGTTC TERM 1403 4143729 - 4143707 - R 100 -19.2 -3.6502 | opp_overlap 4143707 CATCCGTTACCGAAA GCCCCCCAAC CTT GTTGGGGGGC TTTCGGCATTCCCGG TERM 1404 4143707 - 4143729 + r 100 -19.2 -3.60792 | opp_overlap 4143707 CATCCGTTACCGAAA GCCCCCCAAC CTT GTTGGGGGGC TTTCGGCATTCCCGG RHA1_ro03940 4144216 - 4143698 - | hypothetical protein RHA1_ro03941 4144392 - 4144225 - | 5-methylcytosine-specific restriction protein B RHA1_ro03942 4145158 - 4144409 - | 5-methylcytosine-specific restriction protein B TERM 1405 4145535 - 4145501 - H 84 -14.2 -3.60818 | CGAAAAGGTCCCAAA GGATGTCGATGGCGCC GTC GGCGCGGTCGACTTCC CAGCGTATGAATCAC RHA1_ro03943 4145756 - 4146151 + | hypothetical protein TERM 1406 4146222 - 4146209 - f 77 -5.3 -4.66833 | GTGTAACCGCAAAAA CTACT AACC AGTAG GGGTACGAAATGCCT gabD2 4146232 - 4147785 + | succinic semialdehyde dehydrogenase RHA1_ro03945 4147767 - 4148231 + | hypothetical protein RHA1_ro03946 4148334 - 4149284 + | hypothetical protein RHA1_ro03947 4150833 - 4149274 - | acyl-CoA synthetase RHA1_ro03948 4151626 - 4150844 - | enoyl-CoA hydratase RHA1_ro03949 4152609 - 4151638 - | NADPH:quinone reductase RHA1_ro03950 4152758 - 4153558 + | enoyl-CoA hydratase RHA1_ro03951 4153646 - 4154839 + | thiolase RHA1_ro03952 4154880 - 4155641 + | 3-hydroxyacyl-CoA dehydrogenase TERM 1407 4155826 - 4155768 - g 86 -21.8 -2.71364 | gap 1, opp_overlap 4155788, overlap 4155771 GGATCTGTTCAACGA GAACGGTTACCACGGCACGACGGTGCG GCAGAT CGC-CCGTCGTGTCGGGGTGACCGTCC CCGCCCTCTACTACC TERM 1408 4155823 - 4155771 - g 100 -19.9 -3.50853 | gap 1, opp_overlap 4155788, overlap 4155768 TCTGTTCAACGAGAA CGGTTACCACGGCACGACGGTGCG GCAGAT CGC-CCGTCGTGTCGGGGTGACCG TCCCCGCCCTCTACT RHA1_ro03953 4155679 - 4156293 + | tetracycline repressor protein RHA1_ro03954 4156345 - 4157496 + | long-chain-acyl-CoA dehydrogenase RHA1_ro03955 4158542 - 4157565 - | 2-nitropropane dioxygenase RHA1_ro03956 4158671 - 4158958 + | hypothetical protein RHA1_ro03957 4159824 - 4158967 - | enoyl-CoA hydratase RHA1_ro03958 4159934 - 4160539 + | TetR family transcriptional regulator RHA1_ro03959 4160601 - 4161602 + | ribonuclease RHA1_ro03960 4161599 - 4161961 + | hypothetical protein RHA1_ro03961 4162184 - 4163434 + | major facilitator superfamily sugar transporter RHA1_ro03962 4164983 - 4163439 - | acyl-CoA synthetase TERM 1409 4163957 - 4163919 - G 81 -18.9 -2.70932 | overlap 4163921 GTCCCGCTCGAAGTA GAGGGTGCCGATCTCGC CCGGT GCGAGGTCGGCACCGTC GTCGCCGCAGATGTG TERM 1410 4163955 - 4163921 - G 72 -15.7 -2.90075 | overlap 4163919 CCCGCTCGAAGTAGA GGGTGCCGATCTCGC CCGGT GCGAGGTCGGCACCG TCGTCGCCGCAGATG RHA1_ro03963 4166346 - 4165033 - | MFS superfamily proline/ betaine transporter RHA1_ro03964 4166576 - 4167661 + | phosphotransferase RHA1_ro03965 4167696 - 4168925 + | acyl-CoA dehydrogenase TERM 1411 4170277 - 4170231 - g 74 -10.9 -3.73775 | gap 2, opp_overlap 4170244, overlap 4170233 GGGAGGTCGAGGAAA CACTCTACGAACTCGACGGCGTC GGT GAGGCCGCCGTGTTCGC-G-GTG CCGCACCCACGGTGG TERM 1412 4170277 - 4170233 - g 73 -12.7 -3.45324 | opp_overlap 4170244, overlap 4170231 GAGGTCGAGGAAACA CTCTACGAACTCGACGGCGTC GGT GAGGCCGCCGTGTTCGCGGTG CCGCACCCACGGTGG RHA1_ro03966 4168922 - 4170496 + | acyl-CoA synthetase RHA1_ro03967 4170510 - 4171859 + | major facilitator transporter RHA1_ro03968 4173441 - 4171912 - | hydrolase TERM 1413 4173460 - 4173411 - G 93 -17.9 -3.59979 | TTTTCCCAGCGTAAA CGCATGTGAGTGGCAAAGTGGGC GTCC GCACACATTGCCACTCACCTGGG GATGGTGCCCAACTC RHA1_ro03969 4174075 - 4173452 - | response regulator, two-component system RHA1_ro03970 4175544 - 4174072 - | sensor kinase, two-component system RHA1_ro03971 4175878 - 4176462 + | ABC transporter permease RHA1_ro03972 4176459 - 4177169 + | ABC transporter, ATP-binding component RHA1_ro03973 4177305 - 4178681 + | major facilitator transporter RHA1_ro03974 4178678 - 4180186 + | NAD-dependent aldehyde dehydrogenase RHA1_ro03975 4180364 - 4181293 + | extradiol dioxygenase, type I RHA1_ro03976 4181290 - 4182072 + | hydrolase TERM 1414 4182289 - 4182269 - g 76 -13.3 -3.40299 | opp_overlap 4182262 4182263 CCACGAGAGCGACAA CCGCACGAT CGG ATCGCGCGG ATTCACGTTCTCCAA RHA1_ro03977 4182087 - 4182593 + | hypothetical protein fabG 4182596 - 4183345 + | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro03979 4183362 - 4184144 + | short chain dehydrogenase RHA1_ro03980 4184137 - 4185804 + | hypothetical protein RHA1_ro03981 4185801 - 4186931 + | aromatic ring monooxygenase RHA1_ro03982 4187269 - 4187769 + | hypothetical protein RHA1_ro03983 4187858 - 4188592 + | flavoprotein RHA1_ro03984 4188703 - 4189662 + | phthalate 4,5-dioxygenase reductase subunit RHA1_ro03985 4189889 - 4190935 + | hypothetical protein RHA1_ro03986 4190941 - 4191630 + | TetR family transcriptional regulator RHA1_ro03987 4192167 - 4191640 - | MarR family transcriptional regulator RHA1_ro03988 4192674 - 4192309 - | hypothetical protein RHA1_ro03989 4192780 - 4193430 + | DNA polymerase RHA1_ro03990 4193510 - 4194412 + | Zn-binding oxidoreductase TERM 1415 4194457 - 4194500 + F 100 -15.2 -4.22375 | gap 1, opp_overlap 4194457 4194456, overlap 4194459 4194460 4194462 GGGGCTGTTTCAAAT TTCCGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTGATG TTTCTTGGATAATGT TERM 1416 4194459 - 4194498 + F 100 -20 -3.70709 | gap 1, opp_overlap 4194457 4194456, overlap 4194457 4194460 4194462 GGCTGTTTCAAATTT CCGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTGA TGTTTCTTGGATAAT TERM 1417 4194460 - 4194497 + F 100 -23.5 -2.81702 | gap 1, opp_overlap 4194457 4194456, overlap 4194459 4194457 4194462 GCTGTTTCAAATTTC CGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTG ATGTTTCTTGGATAA TERM 1418 4194462 - 4194495 + F 100 -22.5 -2.94962 | gap 1, opp_overlap 4194457 4194456, overlap 4194460 4194459 4194457 TGTTTCAAATTTCCG GGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACC TGATGTTTCTTGGAT TERM 1419 4195525 - 4195477 - g 76 -13.9 -3.53091 | gap 3, overlap 4195480 4195520 4195523 ACCGCCCTCCGCAAA CAG-GGTG-AGCG-CGCCGCCGCC GCCG GGCAGCGGCGCCGCAACACCACCG ACCCCGACTCGCGGT TERM 1420 4195521 - 4195480 - g 73 -16.6 -2.60496 | gap 2, overlap 4195477 4195520 GCCCTCCGCAAACAG GGTG-AGCG-CGCCGCCGCC GCCG GGCAGCGGCGCCGCAACACC ACCGACCCCGACTCG RHA1_ro03991 4194514 - 4196145 + | transposase RHA1_ro03992 4197196 - 4196258 - | copper resistance protein RHA1_ro03993 4197708 - 4197202 - | copper resistance protein TERM 1421 4197694 - 4197726 + g 74 -13.6 -3.27475 | gap 1, overlap 4197691 GGTCAGCAGCCCGAC CGCGATCACCTTCAC CGAC GTGAAGGTGGT-GCG TCTTCTCATGAGCGA RHA1_ro03994 4198400 - 4197732 - | hypothetical protein RHA1_ro03995 4198959 - 4198441 - | hypothetical protein RHA1_ro03996 4199631 - 4198978 - | hypothetical protein TERM 1422 4199789 - 4199761 - g 100 -21.1 -3.54029 | GGTCAGCAATCAGAA CCCGACGCCTCTC CCG GAAAGGCGTCGGG GACGGTGATCGATGC RHA1_ro03997 4199731 - 4201350 + | hypothetical protein RHA1_ro03998 4201387 - 4202061 + | hypothetical protein RHA1_ro03999 4202715 - 4202086 - | hypothetical protein TERM 1423 4202747 - 4202733 - R 72 -12.8 -3.05816 | CCACCTCCCAGCGAA GGGCGC TTC GCGCCC CGTGCGCGGTTGAAG RHA1_ro04000 4203571 - 4202804 - | short chain dehydrogenase RHA1_ro04001 4203741 - 4204088 + | hypothetical protein RHA1_ro04002 4204501 - 4204154 - | hypothetical protein RHA1_ro04003 4205942 - 4204494 - | sensor kinase, two-component system TERM 1424 4204781 - 4204809 + g 79 -14.5 -3.36803 | overlap 4204782 TGCGGACGGTGAGGG TGCCGTGGCCGTC CAT GGCGGCGACGGCG TTGTCGATGAGGTTC TERM 1425 4204782 - 4204808 + g 73 -15.8 -2.6176 | overlap 4204781 GCGGACGGTGAGGGT GCCGTGGCCGTC CAT GGCGGCGACGGC GTTGTCGATGAGGTT RHA1_ro04004 4207632 - 4205956 - | response regulator/ thioredoxin-disulfide reductase RHA1_ro04005 4208419 - 4207715 - | hypothetical protein RHA1_ro04006 4209228 - 4208701 - | hypothetical protein TERM 1426 4208770 - 4208727 - G 78 -9.5 -4.12188 | opp_overlap 4208765 GCAGCATGGCCAAAA CGGCCGTGTCGGGATCG CTGATCGGGT CGATGCCGACCCGGCTG ACCATGGACGTCACC RHA1_ro04007 4209428 - 4210777 + | hypothetical protein RHA1_ro04008 4212220 - 4210781 - | amidase TERM 1427 4212324 - 4212274 - R 100 -22.7 -3.60098 | gap 1, overlap 4212261 ATTCCGGACCCGAAA CGAGCACGGGCGCACGGACACACC CGAG AGTG-GTCCGTGCGCCCATGGCCG CGAAGAAGAAACTAG sodA 4212959 - 4212336 - | superoxide dismutase RHA1_ro04010 4213218 - 4214411 + | acetyltransferase TERM 1428 4214677 - 4214654 - g 71 -9.6 -3.79747 | gap 1, opp_overlap 4214670, overlap 4214655 CCACCTACGAGGAAA CGTGCTCCGGT CGC ACCGG-GCACA CCGAGGTGGTGCTCG RHA1_ro04011 4214419 - 4215081 + | protein-methionine-S-oxide reductase TERM 1429 4215112 - 4215154 + T 100 -20.7 -2.71144 | GCGGGTCGCGGACCA CGTGAGCACCG-CAGACGCCG CGA CGGCG-CTGACGGTGCGCACG TGGTTCCACCCGGTC RHA1_ro04012 4215558 - 4215091 - | hypothetical protein RHA1_ro04013 4216392 - 4215562 - | hypothetical protein RHA1_ro04014 4216474 - 4217415 + | AraC family transcriptional regulator RHA1_ro04015 4217524 - 4218117 + | hypothetical protein RHA1_ro04016 4218435 - 4218124 - | hypothetical protein TERM 1430 4218237 - 4218218 - G 75 -9.3 -4.20918 | TGGAACTCGAAGAAA GGTCCGA ATTTCG TCGGACC GTCCAAGATGTCGTT RHA1_ro04017 4218875 - 4218462 - | cyclase RHA1_ro04018 4219003 - 4219482 + | transcriptional regulator RHA1_ro04019 4220408 - 4219479 - | alkanesulfonate monooxygenase TERM 1431 4219601 - 4219629 + g 70 -12.3 -3.29144 | overlap 4219605 4219613 GGCCGATCTTGTCGA CGAGCTCGGCGGG CGA CCCGGCGAGTCCG TTCTCGCGCAGCTCG RHA1_ro04020 4220450 - 4221316 + | signal peptide peptidase RHA1_ro04021 4223098 - 4221317 - | hypothetical protein RHA1_ro04022 4223122 - 4223373 + | hypothetical protein RHA1_ro04023 4223555 - 4224538 + | hypothetical protein RHA1_ro04024 4224535 - 4225299 + | glycerophosphodiester phosphodiesterase RHA1_ro04025 4225333 - 4226247 + | hypothetical protein RHA1_ro04026 4226897 - 4226316 - | ferritin RHA1_ro04027 4227085 - 4228275 + | triacylglycerol lipase RHA1_ro04028 4228864 - 4228286 - | ferritin RHA1_ro04029 4230072 - 4228861 - | LytR family transcriptional regulator RHA1_ro04030 4231164 - 4230337 - | hypothetical protein RHA1_ro04031 4231957 - 4231193 - | hypothetical protein RHA1_ro04032 4232074 - 4232766 + | hypothetical protein pheA 4232803 - 4233738 + | prephenate dehydratase RHA1_ro04034 4233735 - 4234406 + | phosphoglycerate mutase RHA1_ro04036 4236661 - 4235807 - | hypothetical protein RHA1_ro04035 4234462 - 4235865 + | hypothetical protein RHA1_ro04037 4238259 - 4236658 - | PPE family protein RHA1_ro04038 4238694 - 4238344 - | hypothetical protein RHA1_ro04039 4239802 - 4238696 - | hypothetical protein TERM 1432 4238759 - 4238786 + g 77 -14.8 -3.16191 | gap 1 CCTGCCCTCCGGAAC CGGCGGCGGCGGC ACG GGCGCCGC-GCCG TTGATGAGGATCTCG TERM 1433 4239673 - 4239639 - G 84 -16.4 -3.53012 | overlap 4239640 TCGCTGCGGTTGAAA CCGCCGGCGATCGCGA ACG TCGCGATCGCCGCCAC CACGGCACCTGCCGC TERM 1434 4239672 - 4239640 - G 83 -19.9 -2.71712 | overlap 4239639 CGCTGCGGTTGAAAC CGCCGGCGATCGCGA ACG TCGCGATCGCCGCCA CCACGGCACCTGCCG RHA1_ro04040 4239884 - 4240303 + | ankyrin protein serS 4240337 - 4241593 + | seryl-tRNA synthetase RHA1_ro04042 4241683 - 4241862 + | BFD-like [2Fe-2S]-binding protein RHA1_ro04043 4241954 - 4242439 + | bacterioferritin TERM 1435 4242463 - 4242448 - f 71 -7.5 -4.13014 | overlap 4242449 CGGATAGGTCGAAAA CGGGG TGACAC CCCCG GCGCGGAGTGCGAAA TERM 1436 4242507 - 4242479 - f 74 -11 -3.57144 | gap 1 GCGCGGAGTGCGAAA CTGGGC-GCGTGA GATA TCCCGCCGCCCAG CCTTGACCCAGTTCG RHA1_ro04044 4242544 - 4243731 + | major facilitator transporter RHA1_ro04045 4245415 - 4243784 - | hypothetical protein RHA1_ro04046 4246258 - 4245431 - | hypothetical protein plsC 4246348 - 4247103 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase RHA1_ro04048 4247109 - 4247846 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase RHA1_ro04049 4247891 - 4248712 + | hypothetical protein TERM 1437 4248731 - 4248689 - T 100 -19.3 -3.53224 | gap 1, overlap 4248690 4248718 GACGGGGTCGCGAAA GTGCTCGAGCGCTGGTGGTC CTGA GACCACCAGCGCCCGAG-AG GGTGAAACCCGATCA TERM 1438 4248730 - 4248690 - T 100 -22.8 -2.71791 | gap 1, overlap 4248689 4248718 ACGGGGTCGCGAAAG TGCTCGAGCGCTGGTGGTC CTGA GACCACCAGCGCCCGAG-A GGGTGAAACCCGATC RHA1_ro04050 4250888 - 4248744 - | hypothetical protein TERM 1439 4252117 - 4252084 - g 70 -8.7 -3.90241 | overlap 4252075 GACGAAGGACAACAA GCCCGTCGCCGCCGA ATTC TCGTCGTCCACAGGC GGATACACCGCGGGC RHA1_ro04051 4251125 - 4252699 + | stage II sporulation protein RHA1_ro04052 4253820 - 4252696 - | glycosyl transferase TERM 1440 4253243 - 4253222 - G 72 -8.7 -4.00124 | gap 1 CAGTGCAGAAGGAAA CGCTGCGCCG GGT CGGCG-AACG AGTCGCGCATCACCT TERM 1441 4253942 - 4253892 - H 70 -11.1 -3.42583 | opp_overlap 4253891 4253925 TGAATACAGGGAGAA CTCCTCGTGCG-TGCCGAGGGGG TGCTTGC CCCCCTTGGCCGCGCACG-GGCG GCGGAGTCGCTTACC RHA1_ro04053 4253968 - 4255185 + | UDP-galactopyranose mutase RHA1_ro04054 4255182 - 4257098 + | glycosyltransferase RHA1_ro04055 4257079 - 4257597 + | phosphatase RHA1_ro04056 4257594 - 4258499 + | phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase RHA1_ro04057 4258501 - 4260420 + | hypothetical protein TERM 1442 4260561 - 4260599 + F 91 -17.6 -3.27022 | opp_overlap 4260574, overlap 4260562 4260574 GACGGTGGTCTGGAA GTTCCCTGAAAAACGCTC CGT GAGCGTTTGTCAGGGAAG TTCGTGTGACATACA TERM 1443 4260562 - 4260598 + F 100 -21.1 -2.55999 | opp_overlap 4260574, overlap 4260561 4260574 ACGGTGGTCTGGAAG TTCCCTGAAAAACGCTC CGT GAGCGTTTGTCAGGGAA GTTCGTGTGACATAC TERM 1444 4260574 - 4260586 + F 73 -9.1 -3.86194 | opp_overlap 4260574, overlap 4260562 4260561 AAGTTCCCTGAAAAA CGCTC CGT GAGCG TTTGTCAGGGAAGTT TERM 1445 4260586 - 4260574 - f 86 -9.1 -4.57341 | opp_overlap 4260574 4260562 4260561 AAGTTCCCTGAAAAA CGCTC CGT GAGCG TTTGTCAGGGAAGTT RHA1_ro04058 4260759 - 4261769 + | mycolyltransferase TERM 1446 4261821 - 4261793 - f 100 -27.5 -3.14344 | CACTCCCGTGACGAA TGCCGCCCCGCCG ATC CGGCGGGGCGGCA CTCGTGCGCTCCGGG TERM 1447 4261924 - 4261981 + F 100 -28.5 -3.04894 | overlap 4261925 4261936 TTTGTCAGTAAGGTG ATCCCGTCGAGACGCCACCCGCGCAGC GAGC GCTGCGCGGGTGGCGTCTGTACGTGAG ATTTTCACGAGAGTT TERM 1448 4261925 - 4261982 + F 100 -25.8 -4.08692 | gap 2, overlap 4261924 4261936 TTGTCAGTAAGGTGA TC-C-CGTCGAGACGCCACCCGCGCAGC GAGC GCTGCGCGGGTGGCGTCTGTACGTGAGA TTTTCACGAGAGTTA TERM 1449 4261936 - 4261969 + F 100 -29.7 -2.9176 | overlap 4261924 4261925 GTGATCCCGTCGAGA CGCCACCCGCGCAGC GAGC GCTGCGCGGGTGGCG TCTGTACGTGAGATT RHA1_ro04059 4262055 - 4263050 + | antigen 85 complex protein RHA1_ro04060 4263146 - 4265068 + | antigen 85 complex protein TERM 1450 4265094 - 4265145 + F 100 -20.8 -2.90763 | gap 1, opp_overlap 4265090 GCACTAGAAATCTCA CGCGCAGCGGGCGG-GGCCGGGTCC GGC GGACCAGGCTTCCGCCCGATCTGCG TCTGTACCCTGTCGA RHA1_ro04061 4265195 - 4265770 + | hypothetical protein RHA1_ro04062 4265777 - 4266751 + | hypothetical protein RHA1_ro04063 4266946 - 4267935 + | FMN reductase RHA1_ro04064 4268081 - 4270018 + | acyl-CoA synthetase TERM 1451 4271688 - 4271669 - g 77 -15 -3.14132 | TTTCGGTGGCACCAA CGCGCACG TCGT CGTGCGCG AGTACACCGGACCTG RHA1_ro04065 4270050 - 4275107 + | polyketide synthase RHA1_ro04066 4275104 - 4276648 + | propionyl-CoA carboxylase RHA1_ro04067 4277628 - 4276654 - | hypothetical protein RHA1_ro04068 4281221 - 4277862 - | arabinosyltransferase B TERM 1452 4278869 - 4278837 - G 74 -13.3 -3.28712 | opp_overlap 4278848 CCCGTTGGGGGAGAA GCCGACGGGATCGGC TCC GCCGAGCGGGTCGGC GGGGTTCGCCAGCGG RHA1_ro04069 4284488 - 4281252 - | arabinosyltransferase C RHA1_ro04070 4286236 - 4284632 - | hypothetical protein TERM 1453 4285252 - 4285300 + g 76 -13.9 -3.53091 | gap 3, overlap 4285215 4285211 4285256 ACCGCGAGTCGGGGT CGGTGGTGTTGCGGCGCCGCTGCC CGGC GGCGGCGGCG-CGCT-CACC-CTG TTTGCGGAGGGCGGT TERM 1454 4285256 - 4285297 + g 73 -16.6 -2.60496 | gap 2, overlap 4285211 4285252 CGAGTCGGGGTCGGT GGTGTTGCGGCGCCGCTGCC CGGC GGCGGCGGCG-CGCT-CACC CTGTTTGCGGAGGGC TERM 1455 4286320 - 4286277 - R 100 -15.2 -4.22375 | gap 1, opp_overlap 4286276 4286277, overlap 4286279 4286280 4286282 ACATTATCCAAGAAA CATCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGGAA ATTTGAAACAGCCCC TERM 1456 4286318 - 4286279 - R 100 -20 -3.70709 | gap 1, opp_overlap 4286277 4286276, overlap 4286277 4286280 4286282 ATTATCCAAGAAACA TCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGG AAATTTGAAACAGCC TERM 1457 4286317 - 4286280 - R 100 -23.5 -2.81702 | gap 1, opp_overlap 4286277 4286276, overlap 4286279 4286277 4286282 TTATCCAAGAAACAT CAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCG GAAATTTGAAACAGC TERM 1458 4286315 - 4286282 - R 100 -22.5 -2.94962 | gap 1, opp_overlap 4286277 4286276, overlap 4286280 4286279 4286277 ATCCAAGAAACATCA GGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACC CGGAAATTTGAAACA RHA1_ro04071 4286603 - 4286343 - | hypothetical protein RHA1_ro04072 4286658 - 4287422 + | methionyl aminopeptidase RHA1_ro04073 4289220 - 4287430 - | glycosyl transferase RHA1_ro04074 4289435 - 4290136 + | porin protein RHA1_ro04075 4290408 - 4290133 - | hypothetical protein TERM 1459 4290166 - 4290191 + g 100 -20.5 -3.89524 | AGGGTGCCTGACAGG GGTCGCCGGAC TGAC GTCCGGCGACC TTTGTCGACTGACAT RHA1_ro04076 4292413 - 4290521 - | hypothetical protein RHA1_ro04077 4293186 - 4292425 - | short chain dehydrogenase TERM 1460 4292915 - 4292930 + g 75 -10.4 -4.07687 | overlap 4292907 CCGAACGCGACGATG GCGACG TCGA CGTCGC TTTTGGCCCACGCCT RHA1_ro04078 4294619 - 4293186 - | FAD linked oxidoreductase RHA1_ro04079 4294658 - 4295194 + | hypothetical protein RHA1_ro04080 4295317 - 4296225 + | hypothetical protein RHA1_ro04081 4296395 - 4297432 + | esterase/ lipase RHA1_ro04082 4298509 - 4297433 - | serine protease RHA1_ro04083 4298945 - 4298538 - | hypothetical protein RHA1_ro04084 4300025 - 4299006 - | LacI family transcription regulator RHA1_ro04085 4300318 - 4301829 + | ABC sugar transporter, ATP-binding component RHA1_ro04086 4301826 - 4302881 + | ABC sugar transporter, permease component RHA1_ro04087 4302871 - 4303920 + | ABC sugar transporter, permease component RHA1_ro04088 4303991 - 4305067 + | sugar transporter, solute binding component RHA1_ro04089 4305076 - 4305438 + | hypothetical protein RHA1_ro04090 4305445 - 4306626 + | xylose isomerase RHA1_ro04091 4306626 - 4308071 + | L-arabinose isomerase RHA1_ro04092 4308101 - 4310140 + | short chain dehydrogenase TERM 1461 4310317 - 4310351 + G 78 -17.8 -2.82586 | overlap 4310314 4310313 GGTGTGCTGGACGGA CTGCGGGCCGCGGC GACGGAG GCCGAGGCCCGCGG TGATGTTCTCGTGTC RHA1_ro04093 4310140 - 4311597 + | rhamnulose kinase TERM 1462 4311609 - 4311642 + T 75 -12.4 -3.50853 | CTGACGCCTGTCTCT GCCCTAACCCCGGT CCCGGA ACCGGGGTTCGCGC TTGTCCTTCCGCGCG RHA1_ro04094 4312421 - 4311612 - | enoyl-CoA hydratase TERM 1463 4312247 - 4312284 + g 83 -14.8 -3.54743 | gap 1, opp_overlap 4312246 4312245 CGCCGGAGCAGAAGC CGCGGCCCGCGCCGGTG ATCAC CACCG-CGCGCACCGCG TTGTCGTTGCTGATC RHA1_ro04095 4312950 - 4312444 - | hypothetical protein RHA1_ro04096 4313595 - 4313008 - | dTDP-4-dehydrorhamnose 3,5-epimerase RHA1_ro04097 4314472 - 4313597 - | glucose-1-phosphate thymidylyltransferase RHA1_ro04098 4314536 - 4315540 + | dTDP-glucose 4,6-dehydratase RHA1_ro04099 4316321 - 4315530 - | methyltransferase RHA1_ro04100 4317324 - 4316332 - | hypothetical protein RHA1_ro04101 4318113 - 4317394 - | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase RHA1_ro04102 4318164 - 4319318 + | aminotransferase TERM 1464 4320205 - 4320155 - g 72 -13.4 -3.20382 | gap 4 CGCTACAGCGACGAA CCCCTCGCCGCC---CAGCTCG-CGC ACT ACGTCGGGCTGATCGGCGGCGAGGGG GACGCCGACGCGGAA RHA1_ro04103 4319318 - 4320283 + | oxidoreductase RHA1_ro04104 4321229 - 4320273 - | thioredoxin-disulfide reductase RHA1_ro04105 4321316 - 4321939 + | transcriptional regulator TERM 1465 4322361 - 4322303 - g 78 -15.8 -3.03159 | opp_overlap 4322304, overlap 4322306 CGAACCCGGCGAATA CGACGCCGACGCCGTCCGCGACGCCGAC CTC GTCACCGTCACGATCGGCGCCAACGACT TCTACGCCGAACTCG TERM 1466 4322358 - 4322306 - g 83 -20.5 -2.73994 | opp_overlap 4322304, overlap 4322303 ACCCGGCGAATACGA CGCCGACGCCGTCCGCGACGCCGAC CTC GTCACCGTCACGATCGGCGCCAACG ACTTCTACGCCGAAC RHA1_ro04106 4322001 - 4322852 + | lipase/acylhydrolase RHA1_ro04107 4324995 - 4322824 - | hypothetical protein TERM 1467 4325136 - 4325123 - g 75 -9.5 -3.99324 | TCCCACGACCAGAAA GGCGC ACGT GCGCC GAAGGCGCTGTCGGT TERM 1468 4325528 - 4325585 + G 100 -22.7 -3.31144 | gap 1, overlap 4325531 4325550 CCCGACTCGCAGGTG CAACGCGGCGC-GCTCCGGGGAACCCTG ACG TGGGGTTTCGCGGCGCTGCGCCGCGTGG TTCTCGGGATGCGCA TERM 1469 4325531 - 4325582 + G 89 -23 -2.83271 | gap 1, overlap 4325528 4325550 GACTCGCAGGTGCAA CGCGGCGC-GCTCCGGGGAACCCTG ACG TGGGGTTTCGCGGCGCTGCGCCGCG TGGTTCTCGGGATGC RHA1_ro04108 4325090 - 4325890 + | dolichyl-phosphate beta-glucosyltransferase RHA1_ro04109 4325972 - 4327861 + | glycosyltransferase RHA1_ro04110 4327858 - 4329381 + | hypothetical protein RHA1_ro04111 4330261 - 4329353 - | hypothetical protein RHA1_ro04112 4331334 - 4330294 - | ribosome-associated GTPase RHA1_ro04113 4332461 - 4331550 - | glycosyl transferases RHA1_ro04114 4333354 - 4332458 - | ABC O-antigen transporter, ATP-binding component RHA1_ro04115 4334245 - 4333367 - | ABC O-antigen transporter, permease component RHA1_ro04116 4334935 - 4334288 - | hypothetical protein RHA1_ro04117 4334997 - 4336208 + | cysteine desulfurase RHA1_ro04118 4337319 - 4336324 - | NADPH:quinone reductase RHA1_ro04119 4337441 - 4337923 + | MarR family transcriptional regulator TERM 1470 4338062 - 4338095 + T 100 -19 -3.51235 | opp_overlap 4338058 TCCGCCAACGACCGG CAGCCCTGATCTGG TTTCTT CCAGGTCAGGGCTG TTGTCCTCTCTCTAC RHA1_ro04121 4338469 - 4338107 - | hypothetical protein RHA1_ro04122 4339264 - 4338473 - | antigen protein RHA1_ro04123 4340273 - 4339290 - | hypothetical protein TERM 1471 4339370 - 4339389 + g 72 -13.6 -3.21912 | GCGGGGCGGGTACGG GGTCGTCG AACC CGACGACC TTCCTGCCTTCGGGC RHA1_ro04124 4340662 - 4340273 - | ArsR family transcriptional regulator RHA1_ro04125 4340682 - 4341314 + | hypothetical protein RHA1_ro04126 4341565 - 4342566 + | hypothetical protein RHA1_ro04127 4344276 - 4342576 - | 5prime nucleotidase hisC3 4345469 - 4344366 - | putative aminotransferase RHA1_ro04129 4345504 - 4346229 + | carboxymethylenebutenolidase TERM 1472 4346541 - 4346584 + T 100 -19 -3.87815 | opp_overlap 4346543 4346547, overlap 4346543 4346547 CCCTTCGGGCGCACA AAGAAACCCCGTCAACTGCA GTAA TGCAGGTGGCGGGGTTTCTC TTTGTCGCGATCCGG TERM 1473 4346543 - 4346582 + T 100 -21.6 -3.52906 | opp_overlap 4346543 4346547, overlap 4346541 4346547 CTTCGGGCGCACAAA GAAACCCCGTCAACTGCA GTAA TGCAGGTGGCGGGGTTTC TCTTTGTCGCGATCC TERM 1474 4346582 - 4346543 - T 100 -19.4 -3.85698 | opp_overlap 4346541 4346543 4346547, overlap 4346547 CTTCGGGCGCACAAA GAAACCCCGTCAACTGCA GTAA TGCAGGTGGCGGGGTTTC TCTTTGTCGCGATCC TERM 1475 4346547 - 4346578 + T 100 -16.6 -4.40003 | opp_overlap 4346543 4346547, overlap 4346543 4346541 GGGCGCACAAAGAAA CCCCGTCAACTGCA GTAA TGCAGGTGGCGGGG TTTCTCTTTGTCGCG TERM 1476 4346578 - 4346547 - T 100 -14.4 -4.55295 | opp_overlap 4346547 4346543 4346541, overlap 4346543 GGGCGCACAAAGAAA CCCCGTCAACTGCA GTAA TGCAGGTGGCGGGG TTTCTCTTTGTCGCG RHA1_ro04132 4347129 - 4346611 - | lactoylglutathione lyase TERM 1477 4347167 - 4347134 - H 72 -11.1 -3.51924 | CTTGCACTCATAGAA TCCCACCTTTTTGAC ATAT GTCAAGAAGCTGGGA GGATGGAGCCATGCC RHA1_ro04133 4347178 - 4347537 + | ArsR family transcriptional regulator RHA1_ro04134 4348027 - 4347554 - | hypothetical protein RHA1_ro04135 4348479 - 4348114 - | hypothetical protein RHA1_ro04136 4348580 - 4349479 + | LysR family transcriptional regulator RHA1_ro04137 4350251 - 4349484 - | reducatse RHA1_ro04138 4350943 - 4350248 - | hydratase RHA1_ro04139 4352432 - 4350984 - | major facilitator transporter RHA1_ro04140 4352641 - 4353714 + | phosphoglycerate dehydrogenase RHA1_ro04141 4353814 - 4355052 + | glutatione regulated potassium efflux transport protein TERM 1478 4355771 - 4355783 + G 71 -10.5 -3.71848 | overlap 4355725 GTTGATCGCGCTCGC CGCGG GAG CCGCG TTCTTCCTGCAGCAA RHA1_ro04142 4355049 - 4356617 + | multidrug ABC transporter RHA1_ro04143 4356720 - 4358033 + | penicillin-binding protein RHA1_ro04144 4358152 - 4358913 + | hydroxylase RHA1_ro04145 4359361 - 4358930 - | hypothetical protein RHA1_ro04146 4359567 - 4359415 - | hypothetical protein RHA1_ro04147 4359957 - 4359688 - | hypothetical protein RHA1_ro04148 4360485 - 4360081 - | very short patch repair protein RHA1_ro04149 4361678 - 4360500 - | DNA (cytosine-5-)-methyltransferase TERM 1479 4361199 - 4361144 - G 82 -18.2 -3.08679 | gap 1 CGTCCTCACCGAACA GCACCGCCCGGGGGTCCTCGGTGCGCG AGG CGAGCATC-AGGACCCGCTGACGGCGC TGAGGGAGCCCGAAC TERM 1480 4361780 - 4361729 - H 100 -24.1 -3.14132 | overlap 4361732 GCCTGCTTTGACCAA CGACCCGTGAGTACTTATTAACC GCGGGG GGTTAACAAGTACTCACGGGTGG CGAAGCCACATAGAC TERM 1481 4361777 - 4361732 - H 100 -24.4 -2.77899 | overlap 4361729 TGCTTTGACCAACGA CCCGTGAGTACTTATTAACC GCGGGG GGTTAACAAGTACTCACGGG TGGCGAAGCCACATA RHA1_ro04150 4361826 - 4362923 + | hypothetical protein RHA1_ro04151 4362920 - 4363507 + | hypothetical protein TERM 1482 4363521 - 4363507 - T 71 -12.8 -2.94912 | GGCCGAACGGATATA GGCGGC GCA GCCGCC CGTGCGTGGTTGACG tyrA 4364527 - 4363559 - | prephenate dehydrogenase RHA1_ro04153 4364532 - 4365116 + | hypothetical protein RHA1_ro04154 4365215 - 4365586 + | tRNA-specific adenosine deaminase RHA1_ro04155 4365638 - 4365916 + | hypothetical protein TERM 1483 4366060 - 4366099 + F 100 -21.6 -2.87132 | opp_overlap 4366065 4366066, overlap 4366066 ATCCCTCCGCCACCG CCAAAGCTCCCCACCTGC ACAC GCAGGTGGGGAGTTTTTG TGTATCCGGGCCGGG TERM 1484 4366094 - 4366065 - f 93 -17.9 -3.57144 | opp_overlap 4366060 4366066, overlap 4366066 TCCGCCACCGCCAAA GCTCCCCACCTGC ACAC GCAGGTGGGGAGT TTTTGTGTATCCGGG TERM 1485 4366066 - 4366093 + F 100 -21.4 -5.03994 | opp_overlap 4366066 4366065, overlap 4366060 CCGCCACCGCCAAAG CTCCCCACCTGC ACAC GCAGGTGGGGAG TTTTTGTGTATCCGG TERM 1486 4366093 - 4366066 - f 100 -21.4 -2.74144 | opp_overlap 4366060 4366066, overlap 4366065 CCGCCACCGCCAAAG CTCCCCACCTGC ACAC GCAGGTGGGGAG TTTTTGTGTATCCGG RHA1_ro04157 4366154 - 4366948 + | reductase TERM 1487 4367333 - 4367319 - gT 70 -7.8 -3.99324 | overlap 4367320 GTCGAGGATGAGAAA CTCACC GCG GGCGAG GTGACCGTGCAGGTG RHA1_ro04159 4368392 - 4367634 - | C-5 sterol desaturase RHA1_ro04158 4367019 - 4367702 + | hypothetical protein RHA1_ro04160 4368751 - 4369167 + | dioxygenase RHA1_ro04161 4369205 - 4369702 + | transcriptional regulator RHA1_ro04162 4370420 - 4369668 - | transcriptional regulator RHA1_ro04163 4371395 - 4370436 - | vanillate O-demethylase oxidoreductase RHA1_ro04164 4371641 - 4371411 - | hypothetical protein RHA1_ro04165 4372715 - 4371645 - | vanillate monooxygenase oxygenase subunit RHA1_ro04166 4373666 - 4372851 - | hypothetical protein RHA1_ro04167 4373716 - 4374390 + | transcriptional regulator RHA1_ro04168 4374441 - 4376795 + | membrane transporter TERM 1488 4376833 - 4376869 + F 100 -13.7 -4.23674 | gap 1, opp_overlap 4376827 4376853, overlap 4376834 CGTCAACCACTCACG GGGCCGCAGGCCC-CG AAAATC CGCGGGCCTGCGGTCG TTTCTGTTGGTAACC TERM 1489 4376834 - 4376868 + F 88 -17.2 -3.13722 | gap 1, opp_overlap 4376827 4376853, overlap 4376833 GTCAACCACTCACGG GGCCGCAGGCCC-CG AAAATC CGCGGGCCTGCGGTC GTTTCTGTTGGTAAC TERM 1490 4377074 - 4377052 - g 74 -13.4 -3.36327 | CGATCTCATCGACAA CGGCGTCACC AAG GGCGACACCG GGTACATCCTGTCCA RHA1_ro04169 4376921 - 4378654 + | bifunctional ABC lipid A exporter RHA1_ro04170 4378651 - 4380630 + | bifunctional ABC lipid A exporter RHA1_ro04171 4381914 - 4380673 - | hypothetical protein RHA1_ro04172 4383803 - 4381920 - | arylsulfatase TERM 1491 4383400 - 4383369 - G 74 -12.2 -3.55444 | overlap 4383370 GCCGTACGTCGGAAA GTCCCGTCCCATCG CGGG CGACGGGACGGGGG AGGCCCGATTACCGG TERM 1492 4383399 - 4383370 - G 70 -15.7 -2.73124 | overlap 4383369 CCGTACGTCGGAAAG TCCCGTCCCATCG CGGG CGACGGGACGGGG GAGGCCCGATTACCG TERM 1493 4383506 - 4383466 - G 88 -15.4 -3.72695 | gap 1, opp_overlap 4383472, overlap 4383469 AGCCCGGTGACGAAA CAC-GCACGGCCGGGGCTG CACG CCACCCCGGCCGTGTAGTG CTGCGTGAACTTCAC TERM 1494 4383502 - 4383469 - G 73 -15.9 -2.66695 | opp_overlap 4383472, overlap 4383466 CCGGTGACGAAACAC GCACGGCCGGGGCTG CACG CCACCCCGGCCGTGT AGTGCTGCGTGAACT TERM 1495 4383472 - 4383499 + g 72 -14.9 -2.83164 | gap 1, opp_overlap 4383469 4383466 GTGACGAAACACGCA CGGCCGGGGCTG CACGC CA-CCCCGGCCG TGTAGTGCTGCGTGA TERM 1496 4384311 - 4384257 - g 74 -12.1 -3.61398 | gap 1, overlap 4384258 CGTCGGGTTCAAGAA GGTCCTCGCGATGGAAGCCGTCGGGG TACG CTCCGACGACGT-CATCGCGAAGGGC AAGGAACGCCTCGCG RHA1_ro04173 4383910 - 4385154 + | queuine tRNA-ribosyltransferase RHA1_ro04174 4385926 - 4385198 - | hypothetical protein TERM 1497 4386023 - 4385971 - R 100 -24.5 -3.27298 | gap 1, opp_overlap 4385967 4385983, overlap 4386010 4386011 4386014 TGCGCGAATCAGGAA CGGGTGAACGTACCTTTTGTC-CG ATCTGA CGCGACGAAAGGTACGTTCACCCG CACGGTAGGACGGGT RHA1_ro04175 4386679 - 4386044 - | hypothetical protein TERM 1498 4386825 - 4386777 - R 100 -22.6 -4.30844 | overlap 4386813 4386816 4386818 ACGGGAGTAGCAAAA CGGGTGAGCGTACTTTCCGTCC GCGAA GGACAGGAAGCACACTCACCCG TGGGAGCGAGCGGTC RHA1_ro04176 4387855 - 4386839 - | proline rich protein RHA1_ro04177 4388063 - 4388611 + | hypothetical protein gltX1 4389536 - 4388580 - | glutamyl-Q tRNA(Asp) synthetase RHA1_ro04179 4390159 - 4389548 - | transcriptional regulator RHA1_ro04180 4390817 - 4390239 - | dihydrofolate reductase TERM 1499 4390390 - 4390435 + g 75 -16.7 -2.91452 | CGGAGCTCGTCGATC TCGGGCTGCACTGCGGCGGCG AGCT TGCCGCCGCCGCACAGCCAGA TGTCCTTGCCGTCCT RHA1_ro04181 4390900 - 4391481 + | TetR family transcriptional regulator RHA1_ro04182 4392133 - 4391465 - | 1-acylglycerol-3-phosphate O-acyltransferase RHA1_ro04183 4392188 - 4392775 + | TetR family transcriptional regulator RHA1_ro04184 4394291 - 4392759 - | phosphoesterase RHA1_ro04185 4394528 - 4394935 + | hypothetical protein RHA1_ro04186 4395732 - 4394893 - | AraC family transcriptional regulator RHA1_ro04187 4395858 - 4396373 + | lipoprotein RHA1_ro04188 4397031 - 4396348 - | hypothetical protein TERM 1500 4397093 - 4397038 - R 72 -11.4 -3.50588 | gap 4, overlap 4397036 4397053 ACTCCACATCAAACA CCGCAGCCGACGACAGTGGCCCCCGATC CGGA GATCGGGGGCCACTGTGG-CG--TA-GG TCAGGCGCTCACGAC TERM 1501 4397082 - 4397053 - R 100 -23.7 -2.79796 | overlap 4397038 4397036 CCGCAGCCGACGACA GTGGCCCCCGATC CGGA GATCGGGGGCCAC TGTGGCGTAGGTCAG RHA1_ro04189 4398075 - 4397116 - | antigen 85 complex protein TERM 1502 4398262 - 4398221 - R 100 -26.1 -4.68593 | opp_overlap 4398225 CTGAGGACCGAAAAA GGAACCCCTGCGAACCGCT TCTC AGCAGTTCACAGGGGTTCC TGTGGCGGAGGATAG TERM 1503 4398225 - 4398258 + r 83 -15.3 -3.25823 | opp_overlap 4398221 GGACCGAAAAAGGAA CCCCTGCGAACCGCT TCTC AGCAGTTCACAGGGG TTCCTGTGGCGGAGG RHA1_ro04191 4398906 - 4398412 - | hypothetical protein RHA1_ro04193 4399170 - 4400468 + | hypothetical protein TERM 1504 4400516 - 4400473 - T 100 -29.1 -2.79831 | gap 1, opp_overlap 4400476, overlap 4400476 CGAAGTCCTAGTAGA CGACGTCCGGCCGCTCACCC TTGGC GGGTGAGCGGCCGGACGT-G TCTCTACATCCTGGC TERM 1505 4400476 - 4400514 + T 100 -31.9 -3.01416 | opp_overlap 4400476 4400473 AGTCCTAGTAGACGA CGTCCGGCCGCTCACCC TTGGC GGGTGAGCGGCCGGACG TGTCTCTACATCCTG TERM 1506 4400514 - 4400476 - T 100 -31.9 -2.66435 | opp_overlap 4400476, overlap 4400473 AGTCCTAGTAGACGA CGTCCGGCCGCTCACCC TTGGC GGGTGAGCGGCCGGACG TGTCTCTACATCCTG RHA1_ro04194 4401356 - 4400520 - | hypothetical protein RHA1_ro04195 4402453 - 4401443 - | iron-enterobactin transporter periplasmic binding protein TERM 1507 4403315 - 4403340 + G 70 -14.7 -2.75712 | opp_overlap 4403297, overlap 4403313 CGGCTGCAGTCCCGC GTTCGCCGCCG GTCT CGCCGGCGAAC TGCTTCCCTGGCTGC RHA1_ro04196 4402527 - 4403750 + | enterobactin/ferric enterobactin esterase RHA1_ro04197 4403837 - 4404430 + | hypothetical protein RHA1_ro04198 4405779 - 4404433 - | ammonium transporter TERM 1508 4407951 - 4407893 - g 80 -18.1 -2.8372 | gap 2, opp_overlap 4407872, overlap 4407892 CAGCGCCGACGAAAC CGGCAGGCGCACCGCGGT--TCTCCCGGC CCA GCCAGGAGCGGACCGCACAGCGCCCGCCG CAGCAGCAGTCCGAC RHA1_ro04199 4405990 - 4408251 + | DNA polymerase III subunits gamma and tau RHA1_ro04200 4408318 - 4409037 + | hypothetical protein RHA1_ro04201 4409082 - 4411025 + | sensor kinase, two-component system TERM 1509 4411057 - 4411085 + G 74 -14.5 -3.04144 | overlap 4411072 4411075 CACCACCTCGTCCAT CCGGGTCGCCGTC GTC GACGACCACCCGG TGTTCCGGCTGGGCA TERM 1510 4411177 - 4411196 + G 76 -13.6 -3.44051 | GGAGGCGCTCGACGT CGTCGACG GTGA CGTCGACG TTGTGCTGATGGACC RHA1_ro04202 4411022 - 4411693 + | response regulator, two-component system RHA1_ro04203 4411740 - 4412303 + | hypothetical protein TERM 1511 4413355 - 4413315 - g 71 -11.7 -3.61398 | opp_overlap 4413315, overlap 4413350 CCCGGCCTCGAAGAA GGTCCTCGCCGCCGCCGGT CTG ACCGTCGACGACATCGACC TGTTCGAGATCAACG RHA1_ro04204 4412386 - 4413600 + | acetyl-CoA acetyltransferase fadB1 4413630 - 4415768 + | fatty oxidation complex alpha subunit TERM 1512 4415776 - 4415831 + F 100 -29.2 -3.29263 | opp_overlap 4415768 4415819, overlap 4415780 TGAAGTAGGCGGCTC CGCCGCCCGTGCGTGGTTAAGGAGTC TCTG GACTCGTTAACCACGCACGGGCTGAG TTATCCCCAACCTGT TERM 1513 4415780 - 4415827 + F 100 -31.6 -2.59431 | opp_overlap 4415768 4415819, overlap 4415776 GTAGGCGGCTCCGCC GCCCGTGCGTGGTTAAGGAGTC TCTG GACTCGTTAACCACGCACGGGC TGAGTTATCCCCAAC RHA1_ro04206 4415923 - 4416990 + | hypothetical protein TERM 1514 4417000 - 4417014 + T 74 -12.8 -3.23853 | opp_overlap 4416994, overlap 4416998 CCTTAACCACTCACG GGCGGC GGA GCCGCC TATTACTTCCACCAC RHA1_ro04207 4418318 - 4417017 - | cyclopropane-fatty-acyl-phospholipid synthase RHA1_ro04208 4419799 - 4418315 - | hypothetical protein RHA1_ro04209 4420015 - 4420449 + | hypothetical protein RHA1_ro04210 4420567 - 4420908 + | hypothetical protein recR 4420918 - 4421526 + | recombination protein RecR RHA1_ro04212 4421523 - 4422095 + | transcriptional regulator TERM 1515 4422124 - 4422153 + F 87 -15.2 -3.56643 | opp_overlap 4422124 GGCTTGCGGGGTAAA TGGTTGTTCACC TAATGT GGTGAACAACCA TTTACCAGCTGTGCA TERM 1516 4422153 - 4422124 - f 86 -15.2 -3.53012 | opp_overlap 4422124 GGCTTGCGGGGTAAA TGGTTGTTCACC TAATGT GGTGAACAACCA TTTACCAGCTGTGCA RHA1_ro04213 4422180 - 4423637 + | major facilitator superfamily multidrug resistance protein TERM 1517 4423753 - 4423706 - T 100 -21.4 -3.43437 | opp_overlap 4423709 4423745 4423747, overlap 4423707 4423709 GAGAAAACTCGAGAA GCAGAGATCCGGCCGAGAATGC AGAA GCATTCCCGGCCGAACCCCTGT CTGGGGTCTTTACTC TERM 1518 4423752 - 4423707 - T 100 -24.9 -2.65339 | opp_overlap 4423709 4423745 4423747, overlap 4423706 4423709 AGAAAACTCGAGAAG CAGAGATCCGGCCGAGAATGC AGAA GCATTCCCGGCCGAACCCCTG TCTGGGGTCTTTACT TERM 1519 4423750 - 4423709 - T 100 -21.7 -2.85909 | opp_overlap 4423709 4423745 4423747, overlap 4423707 4423706 AAAACTCGAGAAGCA GAGATCCGGCCGAGAATGC AGAA GCATTCCCGGCCGAACCCC TGTCTGGGGTCTTTA TERM 1520 4423709 - 4423750 + T 71 -12.9 -2.92449 | opp_overlap 4423709 4423707 4423706, overlap 4423745 4423747 AAAACTCGAGAAGCA GAGATCCGGCCGAGAATGC AGAA GCATTCCCGGCCGAACCCC TGTCTGGGGTCTTTA RHA1_ro04214 4424095 - 4423763 - | ArsR family transcriptional regulator RHA1_ro04215 4424538 - 4424092 - | hypothetical protein TERM 1521 4424565 - 4424589 + H 76 -5.8 -4.53036 | gap 1, overlap 4424568 TTTTCGACGACGGTT GATGTGCAACT CCAT GGTTGCAC-TC TTTTCGTCTTTCTGC RHA1_ro04216 4424759 - 4425037 + | hypothetical protein RHA1_ro04217 4425770 - 4425060 - | cobyric acid synthase RHA1_ro04218 4427016 - 4425763 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 1522 4426528 - 4426557 + g 71 -9.9 -3.77219 | GGCGATCACGACGGC CTCCGGGTGTGCG GCGA CGCAGGCGCGGAG TTTGCGTTCGATCAT RHA1_ro04219 4427959 - 4427042 - | amino acid ABC transporter RHA1_ro04220 4428032 - 4428925 + | LysR family transcriptional regulator TERM 1523 4428972 - 4428938 - T 81 -14.4 -3.54459 | gap 2, overlap 4428927 4428942 4428946 TGAACGGGCCGGAAA CGGACGAAGGCCCGCC GGGTG GGCGGGCCTTC--CCG TGGATCGGGAACTCA TERM 1524 4428970 - 4428942 - T 77 -16 -2.64155 | overlap 4428927 4428938 4428946 CGGGCCGGAAACGGA CGAAGGCCCGCC GGGTG GGCGGGCCTTCC CGTGGATCGGGAACT TERM 1525 4428966 - 4428946 - T 86 -15.4 -3.25088 | overlap 4428927 4428942 4428938 CCGGAAACGGACGAA GGCCCGCC GGGTG GGCGGGCC TTCCCGTGGATCGGG RHA1_ro04221 4429365 - 4428985 - | hypothetical protein TERM 1526 4429482 - 4429540 + r 76 -13.7 -3.13164 | gap 1, opp_overlap 4429452 4429451 4429489 4429490, overlap 4429485 TCCCCACCCGCGGTG GCGGAAACG-CCGAACGGCCGCGACACC GGTA GGTGCCGCGGCCGTTCGGGTGGGACTAC TTGCCTGCTTCGACA TERM 1527 4429485 - 4429537 + r 78 -16.2 -2.77235 | gap 1, opp_overlap 4429452 4429451 4429489 4429490, overlap 4429482 CCACCCGCGGTGGCG GAAACG-CCGAACGGCCGCGACACC GGTA GGTGCCGCGGCCGTTCGGGTGGGAC TACTTGCCTGCTTCG TERM 1528 4429531 - 4429489 - R 100 -27.9 -3.53012 | gap 1, opp_overlap 4429485 4429482, overlap 4429452 4429451 4429490 CCGCGGTGGCGGAAA CGCCGAACGGCCGCGACACC GGTA GGTGCCGCGGCCGTTCGG-G TGGGACTACTTGCCT TERM 1529 4429531 - 4429490 - R 100 -28.1 -2.71712 | opp_overlap 4429485 4429482, overlap 4429452 4429451 4429489 CGCGGTGGCGGAAAC GCCGAACGGCCGCGACACC GGTA GGTGCCGCGGCCGTTCGGG TGGGACTACTTGCCT RHA1_ro04222 4435023 - 4429537 - | acetyl/propionyl-CoA carboxylase alpha subunit RHA1_ro04223 4435073 - 4435318 + | hypothetical protein TERM 1530 4435392 - 4435426 + T 81 -13.6 -3.53343 | CACAGAGTCGTTTTC GTCCCGTTCCTCGAGA AGC TCTCGGGGAAGGGAAC TTTCACGCGGAAGTT RHA1_ro04224 4437179 - 4435440 - | cytochrome-c oxidase subunit I TERM 1531 4437325 - 4437281 - R 100 -22.8 -3.53012 | overlap 4437284 TTCCGGGGCCGGAAA CGACGCTGCCGCAGGTGCGC GTGGT GCGCGCCTGCGGCAGCGAGG GTAGGGAAGCGGTCA TERM 1532 4437322 - 4437284 - R 100 -27.5 -2.90496 | overlap 4437281 CGGGGCCGGAAACGA CGCTGCCGCAGGTGCGC GTGGT GCGCGCCTGCGGCAGCG AGGGTAGGGAAGCGG leuA1 4439146 - 4437338 - | 2-isopropylmalate synthase TERM 1533 4438924 - 4438964 + g 79 -14.6 -3.28712 | overlap 4438950 CCTGGTTGCCGTCAC GGAGGTCGACCGCGCACC ACTGC GGCGCGCGGTCGATGACC TTGTCGGGCCACGAG TERM 1534 4439336 - 4439392 + H 72 -2.9 -4.63527 | gap 2, opp_overlap 4439347, overlap 4439357 GGGTTCGAAGTCCGA GTGAGGAGA-CAGCGGTGG-GCCGCAG CACGA CGGTGGTATCACCGCTGGTGGCCGCAC TTTTTGCGGTACTGC RHA1_ro04226 4439350 - 4440381 + | hypothetical protein RHA1_ro04227 4440383 - 4440733 + | hypothetical protein TERM 1535 4440746 - 4440720 - T 88 -17.3 -3.06492 | opp_overlap 4440717 4440734 GCATCGACGCGAAGA TCCGGCGCCCC TGAGT GGGACGCCGGA CCGTCTGTCGCGCAC RHA1_ro04228 4441785 - 4440820 - | pirin-like protein RHA1_ro04229 4442257 - 4443348 + | transposase TERM 1536 4443611 - 4443568 - T 93 -18.9 -3.14564 | gap 1, opp_overlap 4443563 GGACCTGTCGATGAA GTGCAGAGGCGCCTCCAGGG TCGCT CCCCGGAGGCGCCTC-ACTC TGCCCTCTTGACAGA RHA1_ro04230 4444049 - 4443639 - | hypothetical protein RHA1_ro04231 4454727 - 4444144 - | type I polyketide synthase RHA1_ro04232 4454758 - 4455033 + | hypothetical protein RHA1_ro04233 4455077 - 4455865 + | site-specific DNA-methyltransferase (adenine-specific) RHA1_ro04234 4456580 - 4455894 - | transcriptional regulator RHA1_ro04235 4456666 - 4457103 + | hypothetical protein TERM 1537 4458051 - 4458014 - g 80 -16.3 -3.14344 | gap 1, overlap 4458001 CACGCCTCCGACGAA GACGACCTGCGGCCGCAG GTC CCGCTGCC-CAGGCCGTC GATCCGCTACCGGCT RHA1_ro04236 4457228 - 4458793 + | hypothetical protein RHA1_ro04237 4458831 - 4460801 + | gamma-glutamyltransferase RHA1_ro04238 4461831 - 4460821 - | monooxygenase RHA1_ro04239 4461945 - 4462136 + | hypothetical protein TERM 1538 4464432 - 4464456 + G 74 -12.7 -3.57144 | GGGACGGGACCGGCA CCCGGCAGGAG CTT CACCAGCCGGG TTTCAACCTCGACGA RHA1_ro04240 4462157 - 4464538 + | glutamate--cysteine ligase, GCS2 family/ peptidase RHA1_ro04241 4465563 - 4464547 - | ABC Fe(3+)-siderophore binding lipoprotein transporter, periplasmic binding component RHA1_ro04242 4466016 - 4466315 + | hypothetical protein RHA1_ro04243 4466325 - 4466759 + | hypothetical protein TERM 1539 4466805 - 4466779 - T 100 -22.4 -3.03441 | TATCACGTTTCAACA GCGCCCTCACTC GTC GAGTGAGGGCGC CGCTGCGTATCAGGG RHA1_ro04244 4468648 - 4466825 - | flavin binding monooxygenase TERM 1540 4468202 - 4468239 + g 73 -16.3 -2.52635 | overlap 4468179 4468201 GGTGTCGCCGCCGGA GCCGTGGACGGCACC CTTGACGC GGTTCCGTCCGCGGC GTTCCTCGTGGCCCT RHA1_ro04245 4470508 - 4468844 - | transposase TERM 1541 4470556 - 4470513 - H 100 -15.2 -4.22375 | gap 1, opp_overlap 4470512 4470513, overlap 4470515 4470516 4470518 ACATTATCCAAGAAA CATCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGGAA ATTTGAAACAGCCCC TERM 1542 4470554 - 4470515 - H 100 -20 -3.70709 | gap 1, opp_overlap 4470513 4470512, overlap 4470513 4470516 4470518 ATTATCCAAGAAACA TCAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCGG AAATTTGAAACAGCC TERM 1543 4470553 - 4470516 - H 100 -23.5 -2.81702 | gap 1, opp_overlap 4470513 4470512, overlap 4470515 4470513 4470518 TTATCCAAGAAACAT CAGGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACCCG GAAATTTGAAACAGC TERM 1544 4470551 - 4470518 - H 100 -22.5 -2.94962 | gap 1, opp_overlap 4470513 4470512, overlap 4470516 4470515 4470513 ATCCAAGAAACATCA GGTCGGGGCG-CCGCG GCA CGCGGACACCCCGACC CGGAAATTTGAAACA RHA1_ro04246 4470689 - 4471129 + | hypothetical protein RHA1_ro04247 4471171 - 4472391 + | sigma factor, includes region 2 RHA1_ro04248 4472433 - 4473467 + | hypothetical protein RHA1_ro04249 4474465 - 4473434 - | enoyl-CoA hydratase RHA1_ro04250 4476099 - 4474462 - | acyl-CoA dehydrogenase RHA1_ro04251 4476707 - 4476096 - | ArcR family transcriptional regulator TERM 1545 4477359 - 4477317 - g 90 -20.4 -3.14344 | TATCGGGCTGATCAA CCGGAAGGTCGCGGCGGGGG AGG CCCTCACCGCGGCCCGCCGG CTGGCCGCCGAGATC TERM 1546 4477376 - 4477410 + G 74 -14.3 -3.37796 | gap 1 TGGCCGCCGAGATCG CCGG-CCTGCCCCAGG TGTG CCTGCGGCAGGATCGG TTGTCGCTGCTCGAG RHA1_ro04252 4476787 - 4477572 + | enoyl-CoA hydratase TERM 1547 4478157 - 4478181 + G 77 -11.3 -3.86311 | AGGAGGACGTGATCT CCGGCAGCGTG GGC CGCGTCGCCGG TTTCGGTTTCGGTGT RHA1_ro04253 4477625 - 4478524 + | hypothetical protein RHA1_ro04254 4479662 - 4478493 - | hypothetical protein RHA1_ro04255 4480650 - 4479700 - | short chain dehydrogenase/reductase family oxidoreductase RHA1_ro04256 4482648 - 4480678 - | phthalate 4,5-dioxygenase TERM 1548 4482603 - 4482625 + g 79 -11.3 -4.0098 | GGGTCACGTCACCGG GGTCGACGT CGATC GCGTCGACC TTCTTTCCGTTCCGC TERM 1549 4482728 - 4482744 + H 75 -6.5 -4.38712 | overlap 4482711 GCGAGACACGATGAG CGTTACC CGC GGTTACG TTTTGTGCGAGTCGA RHA1_ro04257 4482749 - 4483558 + | TetR family transcriptional regulator TERM 1550 4483599 - 4483549 - T 82 -15.6 -3.14132 | gap 1 GCTCGCCCGCATCAA CGCCCCGTGAGTACTCGTCAACC GCGGGT GGGTGACAAGTACTCACGGCG-G AAGCGGCTGGACTCC RHA1_ro04258 4484240 - 4483566 - | hypothetical protein RHA1_ro04259 4484911 - 4484237 - | glycosyltransferase galE 4485971 - 4484904 - | UDP-glucose 4-epimerase RHA1_ro04261 4486774 - 4485968 - | 5'-methylthioadenosine phosphorylase RHA1_ro04262 4486795 - 4488207 + | hypothetical protein RHA1_ro04263 4488915 - 4488247 - | hypothetical protein RHA1_ro04264 4489548 - 4489003 - | hypothetical protein RHA1_ro04265 4490171 - 4489659 - | hypothetical protein RHA1_ro04266 4491423 - 4490173 - | hypothetical protein TERM 1551 4490782 - 4490724 - G 73 -15.9 -2.64616 | GCCCGACCGACAGGA CGGCGACCAGC-GCGGCGCCGCCCCCGAC CAG GGCGAGGGCGCCGCGGCGGCTGATCGT-G GGCGAGGTGGGGTCT RHA1_ro04267 4492748 - 4491540 - | low temperature requirement protein A TERM 1552 4492685 - 4492706 + g 71 -11.5 -3.61398 | opp_overlap 4492682 4492680 4492670 GGTCGAAGAACAGCT CGAGCGGCG ACAC CGACGCTCG TTCTTCGACGAGACG RHA1_ro04268 4494434 - 4492788 - | major facilitator superfamily multidrug transporter TERM 1553 4492951 - 4493008 + g 70 -14.7 -2.75022 | gap 1, overlap 4492951 GCATCGGAATTGATG TCGAGGATGTCCTGGGCGGTGGCGTCGG GGA CCGACGCCTCC-TCCAGGGCCGCCGCCA ATTGTGTGTCGGAGA RHA1_ro04269 4494697 - 4495140 + | hypothetical protein RHA1_ro04270 4495163 - 4495492 + | hypothetical protein TERM 1554 4495546 - 4495495 - T 100 -31.2 -3.53012 | opp_overlap 4495543, overlap 4495536 CCTGGCGTCCTGAAA CCACCCGTGAGTACTTGTTAACCG CGGG CGGTTGACAAGTACTCACGGGCGG CGGAGCCGCTACTTG RHA1_ro04271 4496442 - 4495555 - | ABC sugar transporter, permease component RHA1_ro04272 4497483 - 4496446 - | ABC sugar transporter, permease component RHA1_ro04273 4498761 - 4497496 - | ABC sugar transporter, periplasmic substrate binding component RHA1_ro04274 4500443 - 4498758 - | alpha-glucosidase RHA1_ro04275 4500626 - 4501642 + | LacI family transcription regulator RHA1_ro04276 4502727 - 4501645 - | ATP sugar transporter, ATP-binding component RHA1_ro04277 4502977 - 4502708 - | hypothetical protein RHA1_ro04278 4502958 - 4503962 + | glucokinase RHA1_ro04279 4503947 - 4504282 + | WhiB family transcriptional regulator RHA1_ro04280 4506101 - 4504293 - | protein kinase TERM 1555 4505766 - 4505798 + g 71 -10.6 -3.74872 | gap 2 GACGATGTGGACGGC GCGCTCGACGTCCAGG GCG CC-GGA-GCCGAGCGC TTTCCTGGCGTCGCT RHA1_ro04281 4506387 - 4506154 - | hypothetical protein RHA1_ro04282 4509138 - 4506493 - | transcriptional regulator TERM 1556 4508372 - 4508348 - G 71 -11.3 -3.54475 | overlap 4508349 TCTTCGATGAGATAA TCGGCGACCGC CCG GCGGTCGCCCG TGAACTCGGCGATCA TERM 1557 4508371 - 4508349 - G 70 -14.8 -2.72471 | overlap 4508348 CTTCGATGAGATAAT CGGCGACCGC CCG GCGGTCGCCC GTGAACTCGGCGATC RHA1_ro04283 4509434 - 4510861 + | acyl-CoA dehydrogenase RHA1_ro04284 4512886 - 4511078 - | hypothetical protein RHA1_ro04285 4513956 - 4512883 - | hypothetical protein TERM 1558 4513986 - 4513970 - H 80 -13.7 -3.37975 | ATCGACCACTGAGAA TCCGGCG CCG CGCCGGA TACGTCCTGCGGATC TERM 1559 4514217 - 4514233 + G 73 -12.3 -3.53012 | opp_overlap 4514228 AGTCCAGGACCACCA GCCCTGT CAA ACAGGGC TTTGCCGCGGGAACG RHA1_ro04286 4514180 - 4514602 + | hypothetical protein RHA1_ro04287 4514615 - 4516309 + | sulfate transporter RHA1_ro04288 4516396 - 4517733 + | hypothetical protein RHA1_ro04289 4518395 - 4517898 - | hypothetical protein TERM 1560 4518199 - 4518161 - G 79 -15.3 -3.26164 | overlap 4518147 4518150 4518159 4518162 ACAGCAGCGAGAACA CCACGCTCGCCGGCG TGATGACGG CGCCGGCGAGAGTGA ACAGCAGGGTGGCCA TERM 1561 4518198 - 4518162 - G 73 -16.6 -2.55216 | overlap 4518147 4518150 4518161 4518159 CAGCAGCGAGAACAC CACGCTCGCCGGCG TGATGACGG CGCCGGCGAGAGTG AACAGCAGGGTGGCC TERM 1562 4519261 - 4519223 - g 72 -4.5 -4.4078 | overlap 4519224 4519227 GCCGGTCAAGGAAAA CCGACCACCCGT-TCCCGC CGA GCCGGAGACGGTCGG-CGA CCGATGCCGGTGGAC RHA1_ro04290 4518465 - 4519436 + | hypothetical protein ask 4519532 - 4520797 + | aspartate kinase asd 4520801 - 4521832 + | aspartate-semialdehyde dehydrogenase TERM 1563 4521838 - 4521887 + F 100 -24.5 -3.87994 | opp_overlap 4521855, overlap 4521840 4521842 GTTGGTCTGATCTCC CCCACGTGAGTGGCAAAGTGTGC TTCC GCACGCTTTGCCACTCACGTCTG TTTGTGCGGGTGGAT TERM 1564 4521840 - 4521885 + F 100 -25.7 -3.52906 | opp_overlap 4521855, overlap 4521838 4521842 TGGTCTGATCTCCCC CACGTGAGTGGCAAAGTGTGC TTCC GCACGCTTTGCCACTCACGTC TGTTTGTGCGGGTGG TERM 1565 4521842 - 4521883 + F 100 -28.3 -3.33798 | opp_overlap 4521855, overlap 4521840 4521838 GTCTGATCTCCCCCA CGTGAGTGGCAAAGTGTGC TTCC GCACGCTTTGCCACTCACG TCTGTTTGTGCGGGT RHA1_ro04293 4521912 - 4523030 + | hypothetical protein RHA1_ro04294 4524206 - 4523049 - | transposase RHA1_ro04295 4524226 - 4525014 + | hypothetical protein RHA1_ro04296 4525058 - 4525303 + | hypothetical protein RHA1_ro04297 4526698 - 4525394 - | dipeptidase RHA1_ro04298 4528387 - 4526726 - | hydrolase TERM 1566 4528339 - 4528358 + g 71 -10.6 -3.73783 | opp_overlap 4528351 CTCCGTTCGCGTCCA CGGCGCAG ACGA CCGCGCCG TTCTTACCTTGAATC RHA1_ro04299 4528557 - 4529228 + | GntR family transcriptional regulator TERM 1567 4529303 - 4529339 + T 70 -14.3 -2.62983 | CTCATACGCGTACGA CGACGTGGCCCCGCGGG GCG TCCGTCAGGCCGCGTCG TCGTGTGCGGGTGAG RHA1_ro04300 4530229 - 4529327 - | hypothetical protein RHA1_ro04301 4531229 - 4530291 - | hypothetical protein RHA1_ro04302 4531363 - 4533156 + | oxidase TERM 1568 4533229 - 4533240 + F 79 -4.4 -4.89567 | opp_overlap 4533229 GCGCAAACTTAAAAG CAGT CTGG ACTG TTTTCTATTTTCCGC TERM 1569 4533546 - 4533569 + G 74 -13.8 -3.28924 | overlap 4533531 GTGGACGCCGGCCGC GGCGTCGACG TGCT CGCCGACGCC TTCTCCGGCCCGCTG RHA1_ro04303 4533261 - 4533854 + | TetR family transcriptional regulator RHA1_ro04304 4533851 - 4535341 + | monooxygenase choD 4535338 - 4537050 + | cholesterol oxidase TERM 1570 4537081 - 4537121 + G 78 -17.6 -2.78384 | gap 2 CACCGACTGGCCCGA GAG-CGCGC-CACCCCCGTG GCC CGCGGGGGTGCGCGCGACAC TGTGGTGGCACCGCA RHA1_ro04306 4537034 - 4537678 + | hypothetical protein RHA1_ro04307 4538013 - 4537684 - | ArsR family transcriptional regulator RHA1_ro04308 4538105 - 4538563 + | Fe(3+) uptake regulator RHA1_ro04309 4538618 - 4540087 + | catalase TERM 1571 4540514 - 4540528 + G 70 -12.8 -3.29144 | CGTTCGCGGCGGTGT GCGCCG GAG CGGCGC TTCTCCCGGACCTGG RHA1_ro04310 4540390 - 4541193 + | hypothetical protein RHA1_ro04311 4542205 - 4541195 - | ABC Fe(3+) transporter, substrate binding component TERM 1572 4542284 - 4542315 + rH 100 -20.2 -3.41125 | opp_overlap 4542266 4542267 4542284 CTCCGCCATGCAGAA GAGGCCCTGACCGG CGAA CCGGTCAAGGCCTC TTCTCGGTGTCTCAC TERM 1573 4542315 - 4542284 - RH 100 -22.4 -3.35679 | opp_overlap 4542284, overlap 4542266 4542267 CTCCGCCATGCAGAA GAGGCCCTGACCGG CGAA CCGGTCAAGGCCTC TTCTCGGTGTCTCAC RHA1_ro04313 4543503 - 4542463 - | hypothetical protein TERM 1574 4542981 - 4542961 - GH 75 -14.7 -2.72344 | CGTGACGTCGAACCA GCCGCGCTC GGT GAACGCGGC CCGCAGGTCGCCCCA RHA1_ro04314 4543502 - 4543969 + | hypothetical protein RHA1_ro04315 4546343 - 4544025 - | penicillin-binding protein RHA1_ro04316 4546629 - 4546952 + | WhiB family transcriptional regulator RHA1_ro04317 4548160 - 4547021 - | arsenate (2+)-transporting ATPase RHA1_ro04318 4549230 - 4548157 - | arsenite-transporting ATPase RHA1_ro04319 4549399 - 4549875 + | hypothetical protein RHA1_ro04320 4549880 - 4550671 + | hydrolase TERM 1575 4550723 - 4550681 - T 100 -35.1 -3.72241 | GACTAACCACTGAAA CGACTGCGGCCACCCCCTC GATAG GAGGGGGTGGCCGCAGTCG TAGGTGCGGGAACTA RHA1_ro04321 4551467 - 4550736 - | transcriptional regulator RHA1_ro04322 4551902 - 4551630 - | hypothetical protein RHA1_ro04323 4551924 - 4552769 + | DNA-(apurinic or apyrimidinic site) lyase RHA1_ro04324 4552782 - 4553444 + | thioredoxin RHA1_ro04325 4553441 - 4554202 + | hypothetical protein RHA1_ro04326 4554199 - 4555389 + | protease RHA1_ro04327 4556335 - 4555397 - | esterase TERM 1576 4556079 - 4556089 + g 70 -8.2 -3.87815 | overlap 4556074 GTCCACCCGTCGTAG CCGC GCG GCGG TTTGTCGGAATCGCC RHA1_ro04328 4556806 - 4556345 - | hypothetical protein TERM 1577 4556615 - 4556597 - G 93 -5.9 -5.3798 | GAAGAAGAAGAAAAA CGAGCTG AACAG CAGCACG GTGAACGCGAGGATG RHA1_ro04329 4558101 - 4556866 - | Na+/H+ antiporter 1 TERM 1578 4556966 - 4556950 - G 74 -10.9 -3.78934 | GCGTCGCCACAATAA CGCTGAT CCG ATCAGCG ACGCTGTCAACGATG RHA1_ro04330 4558278 - 4559663 + | major facilitator transporter TERM 1579 4559710 - 4559724 + F 71 -12.8 -3.02459 | opp_overlap 4559704, overlap 4559706 CGTCAACCACGCACG GGCCGC GCA GCGGCC TATAGTTCTTGCATG RHA1_ro04331 4559737 - 4561554 + | adenylate cyclase acsA2 4563570 - 4561606 - | acetyl-CoA synthetase RHA1_ro04333 4563887 - 4565503 + | ABC oligopeptide transporter, substrate-binding component RHA1_ro04334 4565628 - 4566554 + | ABC peptide transporter, permease component TERM 1580 4566660 - 4566628 - g 83 -14.9 -3.65046 | gap 1, overlap 4566596 4566647 GTGGCACCCGAAGAA GTGG-CGGCGCCGG GAGAGA CCGACGCCGTCCAC ATCGACCAGCCGCCG TERM 1581 4566730 - 4566770 + G 85 -16.9 -3.57387 | CGTCCGCTGTTCCTG GTCGCCACGGTGATCATCG TGG TGGTGATCGCCGTTGCGGC TTTCCCCGGTCTGTT RHA1_ro04335 4566547 - 4567521 + | ABC peptide transporter, permease component RHA1_ro04336 4567518 - 4569263 + | ABC peptide transporter, ATP-binding component TERM 1582 4569442 - 4569396 - g 73 -12.1 -3.41745 | gap 2, overlap 4569390 4569397 CCGCCACAAGACCAA CCGGCGCGGCTGGCCGACCACGG CGG CCGAGG-CGGCGGTCCGCGC-GG CCCGCGCCTCGGCGT RHA1_ro04337 4569295 - 4570044 + | hypothetical protein TERM 1583 4570124 - 4570087 - T 100 -20.5 -3.66803 | opp_overlap 4570089 CCCGAATATGTGAAA CGGGCGGCGCTGCCGAC TGGT GTCGACTTCGCCGCCCG TTAGCACGGACAACC RHA1_ro04338 4571295 - 4570459 - | hypothetical protein RHA1_ro04339 4571581 - 4572762 + | hypothetical protein RHA1_ro04340 4572759 - 4573961 + | conjugal transfer protein RHA1_ro04341 4573958 - 4574749 + | hypothetical protein RHA1_ro04342 4574746 - 4575336 + | hypothetical protein TERM 1584 4575509 - 4575529 + G 71 -10.3 -3.69482 | overlap 4575510 CCATCGGCACCATCG CGGCGGCGG CCT TCGGCGCCG TTCTGTATTCGGTCG RHA1_ro04343 4575394 - 4575612 + | hypothetical protein RHA1_ro04344 4575612 - 4575986 + | hypothetical protein RHA1_ro04345 4575980 - 4576339 + | hypothetical protein RHA1_ro04346 4576529 - 4577938 + | major facilitator transporter RHA1_ro04347 4578844 - 4577948 - | LysR family transcriptional regulator TERM 1585 4578244 - 4578201 - G 73 -12.2 -3.53091 | overlap 4578202 ATCCGGGGCGTGAAA CCGGCGTCGTGGGCCGCCCT CTGC AGGGAGTCCCGCAGCGCCGA TCCGGGATCGGCGGG RHA1_ro04348 4578961 - 4579875 + | CoA-transferase alpha subunit RHA1_ro04349 4579872 - 4580654 + | CoA-transferase beta subunit RHA1_ro04350 4583022 - 4580659 - | helicase cspA1 4583420 - 4583623 + | cold shock protein A TERM 1586 4583684 - 4583724 + F 100 -26.3 -4.07568 | overlap 4583658 4583685 CTTCGTGACCGCGTC TGATTCGTCCCCCATCGCC TGA GGCGGTGGGGGACGAGTCG TTTTCACGGCAACGG TERM 1587 4583685 - 4583723 + F 100 -27.6 -3.04398 | overlap 4583658 4583684 TTCGTGACCGCGTCT GATTCGTCCCCCATCGCC TGA GGCGGTGGGGGACGAGTC GTTTTCACGGCAACG RHA1_ro04352 4583764 - 4584348 + | hypothetical protein TERM 1588 4587365 - 4587341 - g 73 -10.6 -3.9243 | overlap 4587356 GAAGGCTGCAAAGAA GACCGCCGCC AAGAA GGCGCCGGCC AAGAAGGCGGCCTCG RHA1_ro04353 4584486 - 4587407 + | DNA topoisomerase I RHA1_ro04354 4587460 - 4588674 + | DNA polymerase III subunit delta' TERM 1589 4588787 - 4588822 + F 100 -27.8 -3.48276 | GGCAGCTCAGCGGTC CTCTGGCCCTTCCCGA TCAG TCGGGAAGGGCCAGAG TTGTCTCCGGGGCAG RHA1_ro04356 4588893 - 4589330 + | hypothetical protein RHA1_ro04357 4589373 - 4589495 + | hypothetical protein RHA1_ro04358 4589544 - 4589741 + | hypothetical protein TERM 1590 4590880 - 4590862 - f 76 -9.6 -4.07568 | overlap 4590866 CGTCGTTTGTGAAAA CTCACAGC TCA ACTGTGAG CCTGCAGGCGATACG TERM 1591 4592050 - 4592069 + F 76 -2 -4.95758 | overlap 4592053 TCAAACCGCAGGAGG GTGTGCCC GTGA GGGTGTGC TTTTTCTGGTCTGGT TERM 1592 4594176 - 4594165 - f 74 -2.2 -4.7254 | ACTGTTTACTAAAAA CACA GGTC CGTG CGAAGTCGTAAGACG TERM 1593 4595384 - 4595345 - f 100 -18.8 -4.49353 | gap 1, opp_overlap 4595348 4595349 TCAGAACAGAAGAAA GAAG-CACACCCCACCACC CAC GGTGATGGGATGTGTCTTC GCTGATGTTCCGTGT TERM 1594 4595349 - 4595379 + F 76 -14 -3.12482 | opp_overlap 4595345, overlap 4595348 AACAGAAGAAAGAAG CACACCCCACCACC CAC GGTGATGGGATGTG TCTTCGCTGATGTTC TERM 1595 4595569 - 4595547 - f 100 -19.2 -3.6502 | opp_overlap 4595547 CATCCGTTACCGAAA GCCCCCCAAC CTT GTTGGGGGGC TTTCGGCATTCCCGG TERM 1596 4595547 - 4595569 + F 100 -19.2 -3.60792 | opp_overlap 4595547 CATCCGTTACCGAAA GCCCCCCAAC CTT GTTGGGGGGC TTTCGGCATTCCCGG RHA1_ro04362 4595759 - 4596643 + | ABC amino acid transporter, extracellular solute binding component TERM 1597 4596726 - 4596677 - g 100 -17.3 -4.4078 | overlap 4596680 GCCTGTGAAGGAAAA CATCGATGCCTTCCTCGATGC GTGGCCGA GCATCCAGGAAGGCATCGTCG TCACGCTCCAACTGA TERM 1598 4596723 - 4596680 - g 84 -19.8 -2.88268 | overlap 4596677 TGTGAAGGAAAACAT CGATGCCTTCCTCGATGC GTGGCCGA GCATCCAGGAAGGCATCG TCGTCACGCTCCAAC RHA1_ro04363 4596666 - 4597397 + | ABC amino acid transporter, permease component RHA1_ro04364 4597394 - 4598038 + | ABC amino acid transporter, permease component TERM 1599 4598528 - 4598477 - g 75 -15.8 -2.82623 | gap 1, overlap 4598474 4598479 TCTGTCGGACAAGGA GACCGCGCACCCGACGCAACTGTCC GGT GGCCAGCAGCAGCGGGT-CGCGATC GCGAGAGCACTCGCC RHA1_ro04365 4598058 - 4598819 + | ABC amino acid transporter, ATPase component RHA1_ro04366 4599831 - 4598827 - | hypothetical protein RHA1_ro04367 4599915 - 4600775 + | LysR family transcriptional regulator RHA1_ro04368 4602388 - 4600814 - | hypothetical protein RHA1_ro04369 4602688 - 4604085 + | major facilitator superfamily multidrug transporter RHA1_ro04370 4605780 - 4604089 - | hypothetical protein RHA1_ro04371 4605959 - 4606405 + | hypothetical protein RHA1_ro04372 4606558 - 4607277 + | coenzyme PQQ synthesis protein RHA1_ro04373 4607346 - 4607702 + | dioxygenase ferredoxin component RHA1_ro04374 4607719 - 4608957 + | reductase TERM 1600 4609031 - 4609056 + G 85 -19.1 -3.04322 | CGAGCGGCGTAACCC CGCCGATCACG ACGA CGTGATCGGCG TGTTCCCGGATTCCA RHA1_ro04375 4608954 - 4610396 + | aldehyde dehydrogenase (NAD+) RHA1_ro04376 4610426 - 4610788 + | aromatic ring dioxygenase RHA1_ro04377 4610785 - 4612377 + | gamma-glutamyltransferase RHA1_ro04378 4612370 - 4612810 + | hypothetical protein RHA1_ro04379 4612851 - 4613498 + | GntR family transcriptional regulator RHA1_ro04380 4613495 - 4614751 + | major facilitator superfamily multidrug resistance protein RHA1_ro04381 4616075 - 4614759 - | aminopeptidase RHA1_ro04382 4619962 - 4616072 - | non-ribosomal peptide synthetase RHA1_ro04383 4620183 - 4620884 + | hypothetical protein TERM 1601 4621559 - 4621583 + G 70 -12.1 -3.34398 | overlap 4621557 CCGGACGAGGGTGAG GCGTGGGCGCT GAT GGCGCTCATGC TGTTTCACGACAGCA RHA1_ro04384 4620884 - 4622119 + | sigma factor, includes region 2 RHA1_ro04385 4623129 - 4622116 - | agmatine deiminase RHA1_ro04386 4624136 - 4623138 - | aliphatic amidase RHA1_ro04387 4624759 - 4624133 - | TetR family transcriptional regulator RHA1_ro04388 4626269 - 4624788 - | purine/cytosine permease RHA1_ro04389 4626566 - 4627813 + | Mce family protein RHA1_ro04390 4628059 - 4629354 + | cysteine desulfurase RHA1_ro04391 4629501 - 4630127 + | hypothetical protein RHA1_ro04392 4630765 - 4630133 - | flavin oxidoreductase RHA1_ro04393 4631295 - 4630822 - | hypothetical protein RHA1_ro04394 4632421 - 4631330 - | hypothetical protein RHA1_ro04395 4632414 - 4633124 + | TetR family transcriptional regulator RHA1_ro04396 4634194 - 4633127 - | poly-beta-hydroxybutyrate polymerase TERM 1602 4633373 - 4633333 - G 70 -12.5 -3.31144 | CGCCGATCGCGAGAA CCGGCACCGCGAGATCG GCCAGCG CGATCGCGCCGTTCCGG GTCTCGAAACTCCCC RHA1_ro04397 4635589 - 4634270 - | monooxygenase TERM 1603 4635446 - 4635409 - G 70 -12.6 -3.28712 | GCCCGCCTGCGAGAA GCGCGTGCACGTGCCG GGCCTG CGGCACGCACCTGCGC GGGACGGCCGTGTCG RHA1_ro04398 4635672 - 4636502 + | enoyl-CoA hydratase TERM 1604 4636558 - 4636503 - f 81 -13.3 -3.62597 | gap 3, opp_overlap 4636505 4636505, overlap 4636504 TTCACGGGCGAATAA TCGGTCCGCTGACGCGGCCGCACCTCCG GGA CGG-GGTGCGGCTGTGTC-GCAGA-CGC TTATCCGCAGGTAAA TERM 1605 4636557 - 4636504 - f 81 -16.8 -2.77344 | gap 3, opp_overlap 4636505 4636505, overlap 4636503 TCACGGGCGAATAAT CGGTCCGCTGACGCGGCCGCACCTCCG GGA CGG-GGTGCGGCTGTGTC-GCAGA-CG CTTATCCGCAGGTAA TERM 1606 4636505 - 4636558 + F 100 -19 -3.29511 | gap 3, opp_overlap 4636504 4636503, overlap 4636505 CACGGGCGAATAATC G-GTCCGCTGACGCGGCCGCACCTCCG GGA CGG-GGTGCGGCTGTGTC-GCAGACGC TTATCCGCAGGTAAA TERM 1607 4636505 - 4636557 + F 89 -19.2 -2.57564 | gap 2, opp_overlap 4636504 4636503, overlap 4636505 CACGGGCGAATAATC GGTCCGCTGACGCGGCCGCACCTCCG GGA CGG-GGTGCGGCTGTGTC-GCAGACG CTTATCCGCAGGTAA TERM 1608 4636699 - 4636675 - g 71 -10.7 -3.54459 | opp_overlap 4636696, overlap 4636676 CGAATTCGGTCGAAA CGCCGGTGG CCTACAC CCACCGGCA GATCCTGGCTGTACT RHA1_ro04399 4636656 - 4638314 + | major facilitator superfamily multidrug transporter RHA1_ro04400 4639049 - 4638558 - | inorganic diphosphatase TERM 1609 4640321 - 4640346 + G 72 -14.7 -2.87344 | CCGATGCTCGACTAC CTGCCGGTGGC CGGT GCCACGGGCAG TCTGTCGGACCGGTA RHA1_ro04401 4639181 - 4640566 + | serine-type D-Ala-D-Ala carboxypeptidase RHA1_ro04402 4640566 - 4641612 + | hypothetical protein RHA1_ro04403 4641635 - 4642612 + | cell cycle protein hpt 4642617 - 4643171 + | hypoxanthine phosphoribosyltransferase RHA1_ro04405 4644974 - 4643187 - | protein kinase TERM 1610 4644055 - 4644077 + g 78 -13.4 -3.64703 | TGGGCCAGTTCGGCG CCGGACGACC ACC GGTCCTCCGG TTTCGGTGCCAGACA RHA1_ro04406 4645436 - 4646782 + | amidase TERM 1611 4646863 - 4646852 - f 76 -2.2 -4.86731 | opp_overlap 4646856, overlap 4646856 TGCGTTGAAAGAAAA GAGA CCGC TCCC AACGGCGGTTGGCTG TERM 1612 4648385 - 4648334 - g 74 -13.6 -3.29144 | gap 1 CGAGCCTGTCTACAA GGTCACCATCCTCGCCCG-CGGCCG CAC CGGCGGTCACGCGATGACGGTGCCC GAGGACGACAAGGGC ftsH 4646994 - 4649264 + | cell division protein FtsH folE 4649325 - 4649942 + | GTP cyclohydrolase I RHA1_ro04409 4649939 - 4650796 + | dihydropteroate synthase RHA1_ro04410 4650789 - 4651151 + | dihydroneopterin aldolase RHA1_ro04411 4651148 - 4651660 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase RHA1_ro04412 4651657 - 4652148 + | hypothetical protein RHA1_ro04413 4652179 - 4653192 + | hypothetical protein RHA1_ro04414 4653340 - 4654266 + | hypothetical protein panC 4654272 - 4655210 + | pantoate--beta-alanine ligase RHA1_ro04416 4655229 - 4655675 + | aspartate alpha-decarboxylase RHA1_ro04417 4655679 - 4656494 + | transcriptional regulator RHA1_ro04418 4656617 - 4657150 + | cysteine dioxygenase RHA1_ro04419 4657147 - 4657569 + | hypothetical protein TERM 1613 4657627 - 4657570 - f 82 -15.6 -3.14132 | opp_overlap 4657614 GTCTCGGCTCACTAA CGGCGAGCCGTC-GCATGACGCTGACGG CGAG CCGTC-GCATGACGCTGACGGCGAGCCG TCGCATGACGCCGAC lysS 4657712 - 4659223 + | lysyl-tRNA synthetase TERM 1614 4659546 - 4659491 - g 71 -11.3 -3.56099 | gap 3, opp_overlap 4659492 GAGAATGCGGCGAAA TTGCGCGAG--CAACTCG-ACGTGTGGG TTT CCCACGCGCGCAAGGTGAGCTCGCGCAA GCGCGGCAAGGCCGT RHA1_ro04421 4659362 - 4659712 + | LSR2 protein precursor RHA1_ro04422 4659812 - 4660747 + | lipase TERM 1615 4661373 - 4661385 + G 73 -10.5 -3.8512 | GAGAGGTTCACCGAT CGCGC ACG GCGCG TTGTTGTCCTGGCTC clpC1 4661352 - 4663889 + | ATP-binding subunit of ATP-dependent Clp protease TERM 1616 4663912 - 4663943 + TF 100 -28.8 -3.322 | opp_overlap 4663912, overlap 4663909 4663909 GTAGTCGAACGACAA CGGGCCGCCGGTGG TTTT CCACCGGCGGCCCG TTCGTGTGTGCGGGT TERM 1617 4663943 - 4663912 - Tf 100 -28.8 -3.51825 | opp_overlap 4663909 4663909 4663912 GTAGTCGAACGACAA CGGGCCGCCGGTGG TTTT CCACCGGCGGCCCG TTCGTGTGTGCGGGT RHA1_ro04424 4664566 - 4663958 - | hypothetical protein RHA1_ro04425 4664565 - 4665554 + | transcriptional regulator RHA1_ro04426 4665594 - 4666031 + | osmotically inducible protein C, OsmC RHA1_ro04427 4666377 - 4666042 - | hypothetical protein RHA1_ro04428 4667063 - 4666374 - | thiocyanate hydrolase gamma subunit RHA1_ro04429 4667359 - 4667060 - | thiocyanate hydrolase alpha subunit RHA1_ro04430 4667799 - 4667356 - | thiocyanate hydrolase beta subunit RHA1_ro04431 4668016 - 4667822 - | hypothetical protein RHA1_ro04432 4668270 - 4668935 + | dithiol-disulfide isomerase RHA1_ro04433 4669444 - 4668932 - | hypothetical protein TERM 1618 4669992 - 4670021 + G 85 -17.9 -3.1996 | overlap 4669981 CAGTTCTGGCGGCAG CTCGTGCAGGCCG ACCG CGTCCTGCACGAG TTCCGTTCCCATTTC RHA1_ro04434 4669530 - 4670471 + | hypothetical protein RHA1_ro04435 4671277 - 4670483 - | hypothetical protein RHA1_ro04436 4671984 - 4671670 - | hypothetical protein RHA1_ro04437 4672035 - 4672772 + | hydrolase RHA1_ro04438 4672930 - 4673268 + | excisionase RHA1_ro04439 4673917 - 4674936 + | O-methyltransferase TERM 1619 4675441 - 4675457 + G 81 -7.2 -4.64766 | CAAGCCGGCTGAAGG CGCCGG CAGCT CCGGTG TTTTTCGCGTCTCCA RHA1_ro04440 4674995 - 4676221 + | hypothetical protein RHA1_ro04441 4677724 - 4676465 - | hypothetical protein ilvE3 4678704 - 4677850 - | branched-chain-amino-acid transaminase RHA1_ro04443 4679524 - 4678706 - | hypothetical protein RHA1_ro04444 4683038 - 4679598 - | multidrug ABC transporter permease/ATPase RHA1_ro04445 4684084 - 4683032 - | hypothetical protein TERM 1620 4684212 - 4684185 - H 71 -7.6 -4.09685 | CCCCAGGGTTGAAAA CGTCACCCCCCC AGCG GAAAGGGTGTCG AGAAGTCTCCCTAGG RHA1_ro04446 4684302 - 4685558 + | hypothetical protein RHA1_ro04447 4685561 - 4686556 + | O-methyltransferase RHA1_ro04448 4687538 - 4686558 - | A/G-specific adenine DNA glycosylase RHA1_ro04449 4687537 - 4688163 + | carbonate dehydratase RHA1_ro04450 4688223 - 4688987 + | hypothetical protein RHA1_ro04451 4689942 - 4688980 - | asparaginase RHA1_ro04452 4691403 - 4689958 - | APC family L-asparagine permease aspA 4692848 - 4691400 - | aspartate ammonia-lyase RHA1_ro04454 4693033 - 4693788 + | GntR family transcriptional regulator RHA1_ro04455 4694889 - 4693804 - | DNA integrity scanning protein DisA RHA1_ro04456 4695113 - 4695538 + | hypothetical protein radA 4696845 - 4695559 - | DNA repair protein RadA TERM 1621 4696810 - 4696770 - G 74 -16.1 -2.75064 | gap 1, opp_overlap 4696750, overlap 4696767 GGGTGGACGGAAGTA CCGCTCCGGCGCC-GGCT TTCGCG AGCGAGGCGCCGGGGCGG CTCGCGACGGACGCG RHA1_ro04458 4697620 - 4696988 - | hypothetical protein RHA1_ro04459 4697884 - 4698372 + | CarD family transcriptional regulator ispD 4698391 - 4699071 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispF 4699071 - 4699547 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase cysS 4699559 - 4700953 + | cysteinyl-tRNA synthetase RHA1_ro04463 4701178 - 4701924 + | tRNA (guanosine-2 RHA1_ro04464 4702295 - 4703284 + | linoleoyl-CoA desaturase RHA1_ro04465 4704170 - 4703289 - | hypothetical protein ald2 4705325 - 4704228 - | alanine dehydrogenase TERM 1622 4704952 - 4704970 + g 71 -10.2 -3.73224 | opp_overlap 4704952 AGCAGCGGGAGGGAA CCGTCGGC GCC GACGACGG TTTCGTAGGCGATGG RHA1_ro04467 4707145 - 4705538 - | transcriptional regulator mmsA3 4707278 - 4708795 + | methylmalonate-semialdehyde dehydrogenase (acylating) gabT1 4708816 - 4710204 + | hypothetical protein TERM 1623 4710240 - 4710277 + F 100 -22.8 -4.208 | CGTGTCCTGACACTC GATCCGTCCCGCGGTC AATGGC GCCCGCGGGACGGATC TTTCTCGTTTTCCAC TERM 1624 4710409 - 4710388 - g 71 -11.5 -3.63515 | GGCTATGTCGAAGAA CGGGATCGG CCGC CCGTTCCCG ACGTCGCGATCCTCG RHA1_ro04470 4710331 - 4713480 + | NAD-dependent glutamate dehydrogenase, C-terminal RHA1_ro04471 4714140 - 4713520 - | allophanate hydrolase subunit 1 TERM 1625 4714085 - 4714115 + g 70 -8.2 -3.86897 | overlap 4714086 TGCGCGAGCACGGTG TCGAGGTCCTCG AACTCGG CGAGGACCGCGC TTTCTCCGACGTCGA RHA1_ro04472 4715027 - 4714140 - | hypothetical protein TERM 1626 4715540 - 4715489 - g 70 -12.3 -3.37796 | gap 2, opp_overlap 4715506 GGCCACGATCTACAA CCCCGGACTCGCG-ACGTC-GGACG GAAA CGTCCCGTCGTTCACGAAACCGGAG AGCATCGTCGACGTT RHA1_ro04473 4715028 - 4716176 + | hypothetical protein RHA1_ro04474 4716173 - 4716934 + | hypothetical protein RHA1_ro04475 4716998 - 4717411 + | hypothetical protein RHA1_ro04476 4717408 - 4717935 + | hypothetical protein RHA1_ro04477 4718905 - 4718012 - | ABC metal ion transporter, permease component TERM 1627 4718670 - 4718632 - G 78 -16.6 -3.10464 | overlap 4718624 CGAGCAACCCGAACA GGACCGCCGCGACCACCG ACC CGGCGATGGCGCCGGCCC CGACGCTGACACCGA RHA1_ro04478 4719780 - 4718902 - | ABC transporter, ATP-binding component TERM 1628 4719699 - 4719757 + g 83 -14.5 -3.63694 | gap 2, opp_overlap 4719709 4719711 GCCAGAGTGTGCGTT CGCCGAAGGACAGTCGCGCCCCCGTCAGT TCC AGTG-CGGGGACGCGACCGTCGC-CGGCG TTCTTCGAAGTGGGT TERM 1629 4719748 - 4719709 - G 78 -17.2 -2.70932 | gap 1, opp_overlap 4719699, overlap 4719711 GCGTTCGCCGAAGGA CAGTCGCGCCCCCGTCAGT TCC AGTG-CGGGGACGCGACCG TCGCCGGCGTTCTTC TERM 1630 4719746 - 4719711 - G 75 -16.2 -2.90075 | gap 1, opp_overlap 4719699, overlap 4719709 GTTCGCCGAAGGACA GTCGCGCCCCCGTCAGT TCC AGTG-CGGGGACGCGAC CGTCGCCGGCGTTCT RHA1_ro04479 4720762 - 4719794 - | ABC transporter, permease component RHA1_ro04480 4720901 - 4721989 + | LacI family transcription regulator RHA1_ro04481 4724543 - 4722003 - | trehalose-phosphatase/ glycoside hydrolase TERM 1631 4724193 - 4724216 + g 73 -7.4 -4.1822 | overlap 4724184 4724194 GGCGATCCGGGTGAG TTCCTCGGTG ATCT CACCGAGAAG TTTCTTGGCGTCGGC RHA1_ro04482 4725250 - 4724612 - | TetR family transcriptional regulator RHA1_ro04483 4725345 - 4727510 + | acyl-CoA dehydrogenase TERM 1632 4727677 - 4727619 - g 74 -15.9 -2.69601 | gap 1, overlap 4727616 TCGAGACGAAACCCA GGAGGCCGTGGCCCAGGTCGCG-GCCGG ACTG CTGGCCCGCGACCTCGACGACGACGCCC TCTGGGCCGCGTTCG RHA1_ro04484 4727593 - 4728633 + | acyl-CoA dehydrogenase RHA1_ro04485 4728618 - 4729769 + | acyl-CoA dehydrogenase RHA1_ro04486 4729784 - 4730794 + | hypothetical protein RHA1_ro04487 4730791 - 4731213 + | hypothetical protein RHA1_ro04488 4731210 - 4732379 + | lipid-transfer protein RHA1_ro04489 4733210 - 4732386 - | PHA depolymerase TERM 1633 4733251 - 4733219 - R 73 -12 -3.31144 | opp_overlap 4733222, overlap 4733222 CGCTCATCGGTACAA CACCGCGCCCCCG-GC GAT GCACGGGGGC-CGTTG TGCCCCCTCGATGTC TERM 1634 4733222 - 4733248 + r 73 -12.3 -3.30243 | opp_overlap 4733222 4733219 TCATCGGTACAACAC CGCGCCCCCG-GC GAT GCACGGGGGC-CG TTGTGCCCCCTCGAT RHA1_ro04490 4733407 - 4733207 - | hypothetical protein RHA1_ro04491 4735129 - 4733432 - | poly(3-hydroxyalkanoic acid) synthase RHA1_ro04492 4736646 - 4735126 - | acyl-CoA synthetase TERM 1635 4735458 - 4735492 + g 85 -15.8 -3.63627 | TCAGGTCCTTTTTCC GGTCGACGATGACG AAATACC CGTCCTCGTCGACC TTTCCGATGTCGCCG RHA1_ro04493 4736793 - 4737992 + | hypothetical protein RHA1_ro04494 4739090 - 4737993 - | potassium uptake protein RHA1_ro04495 4740840 - 4739200 - | transcriptional regulator RHA1_ro04496 4740990 - 4741946 + | ABC transporter, ATP-binding component RHA1_ro04497 4741943 - 4742761 + | ABC transporter, permease component TERM 1636 4742799 - 4742746 - T 74 -10.2 -3.78934 | gap 2 CCGGCGCTACAAGAA GGCCGTCA-GCC-GCTGAGGGGCGGC GGTC ACCGCCCCGCAGCCGGGATCACGCCC AACTGCTGGAGCATG RHA1_ro04498 4743200 - 4742772 - | cyclase TERM 1637 4743255 - 4743291 + r 100 -18.9 -3.34013 | gap 1, opp_overlap 4743255 4743281 CCTCCGCCGGACCAA CGGGACGCTCGTTGCG TCAGAT CG-AACGAGCGTCCCG TTCGTTCAGGGGCTA TERM 1638 4743291 - 4743255 - R 93 -18.9 -3.14132 | gap 1, opp_overlap 4743255, overlap 4743281 CCTCCGCCGGACCAA CGGGACGCTCGTTGCG TCAGAT CG-AACGAGCGTCCCG TTCGTTCAGGGGCTA RHA1_ro04499 4743885 - 4743304 - | hypothetical protein RHA1_ro04500 4744376 - 4743921 - | 1-aminocyclopropane-1-carboxylate oxidase TERM 1639 4744832 - 4744874 + H 70 -11.3 -3.34013 | gap 1 GGTCGATTCGGCGGA TCTCGCGGTCGGTGGTCTCG GTCC CGAGCCCACCCA-TGCGGGA TTCCTTGGCGAGCTC RHA1_ro04501 4745069 - 4746103 + | hydrolase RHA1_ro04502 4746999 - 4746100 - | LysR family transcriptional regulator RHA1_ro04503 4747154 - 4748458 + | NADH dehydrogenase TERM 1640 4748484 - 4748527 + G 89 -18.3 -3.37796 | TGACCGTCACCAGCG CTGGAGTACTCCTGTATCG CACCGA CGATGCGGGGGTGCTCCAG TTGTGGATCGTGCAC RHA1_ro04504 4748468 - 4748932 + | MutT protein RHA1_ro04505 4750664 - 4749036 - | transposase RHA1_ro04506 4753493 - 4750782 - | xanthine dehydrogenase molybdenum binding subunit RHA1_ro04507 4754299 - 4753490 - | hypothetical protein atzB 4755671 - 4754304 - | hydroxydechloroatrazine ethylaminohydrolase RHA1_ro04509 4756582 - 4755671 - | urate oxidase RHA1_ro04510 4756915 - 4756586 - | transthyretin-like protein RHA1_ro04511 4757427 - 4756915 - | putative OHCU decarboxylase TERM 1641 4757150 - 4757169 + g 71 -10.7 -3.61398 | GCGCGGACCACGTCG TCGGCGG AGGCGA CCGCCGA TTGTTCGCGAGCGGA atzA 4758791 - 4757472 - | atrazine chlorohydrolase RHA1_ro04513 4759679 - 4758912 - | esterase TERM 1642 4759270 - 4759233 - G 78 -14.2 -3.56092 | overlap 4759236 CGACGACTCGTGAAA GAACACGGCG-GCCGCCG CTTC CGGCGGCACGACG-GTTC CGGACCCGTCGGGGG TERM 1643 4759267 - 4759236 - G 73 -10.1 -3.91716 | overlap 4759233 CGACTCGTGAAAGAA CACGGCG-GCCGCCG CTTC CGGCGGCACGACG-G TTCCGGACCCGTCGG TERM 1644 4759574 - 4759594 + g 74 -14.7 -3.01791 | opp_overlap 4759570 CGCCGGGAAGATCGA GCGGGTGCG GCT CGTACCCGC TGTTGCGCAACGGCT RHA1_ro04514 4760740 - 4759676 - | isopenicillin-N synthase TERM 1645 4759897 - 4759880 - G 78 -14.1 -3.61398 | opp_overlap 4759879 4759880 4759886 GCCGTCGTGGAAGAA CGCCGCC GATC GGCGGCG CTTGATCGTTCCGTC RHA1_ro04515 4762103 - 4760721 - | xanthine/uracil permease RHA1_ro04516 4762245 - 4762808 + | transcriptional regulator RHA1_ro04517 4763540 - 4762812 - | hydantoin racemase RHA1_ro04518 4765089 - 4763551 - | permease for cytosine/purines, uracil, thiamine, allantoin RHA1_ro04519 4765983 - 4765270 - | GntR family transcriptional regulator RHA1_ro04520 4766926 - 4765994 - | hypothetical protein RHA1_ro04521 4768454 - 4767165 - | hypothetical protein RHA1_ro04522 4769052 - 4768474 - | TetR family transcriptional regulator TERM 1646 4769653 - 4769671 + G 73 -12.4 -3.53012 | overlap 4769640 4769644 4769654 GACGCCGGGTTCGCT TCCGGACG CTT CGTCCGGG TTTCCGAGACCGAGC TERM 1647 4769715 - 4769766 + G 74 -16.4 -2.75481 | overlap 4769717 CGAGCGCGTCGCTCT GACCGTCGGGACCCGCACGGTGAC GGCC GCCGCGGTGCGGGACCGCACGGTC TGGTTCGAGTTCGCG RHA1_ro04523 4769257 - 4770048 + | ATPase trpB2 4771408 - 4770092 - | tryptophan synthase subunit beta TERM 1648 4770226 - 4770278 + g 82 -17 -3.08996 | opp_overlap 4770256 TGGATTCCGGCGCGG GGATGATGCCTTCGGCGCGGGC GAAGAGCAG GCCCGCGGCGAGTGCGTCGTCC TGTTCGATCGCGGTC RHA1_ro04525 4771524 - 4772498 + | hypothetical protein RHA1_ro04526 4772480 - 4772962 + | hypothetical protein RHA1_ro04527 4772965 - 4773915 + | magnesium chelatase RHA1_ro04528 4773912 - 4775135 + | hypothetical protein TERM 1649 4775185 - 4775237 + G 72 -13.2 -3.17229 | gap 1, overlap 4775185 4775183 GATCGCGCTCGTCCT GGG-CGACGCGTCGGCGTTCGCGGC CGCC GCCGCGGGGGTCGCCGCGACGGCAC TGTTGCTCGTCGCGT RHA1_ro04529 4775132 - 4775458 + | hypothetical protein RHA1_ro04530 4775964 - 4775437 - | hypothetical protein hsd4B 4777002 - 4776136 - | 2-enoyl acyl-CoA hydratase kstD 4778710 - 4776992 - | 3-ketosteroid-delta-1-dehydrogenase TERM 1650 4778582 - 4778603 + g 72 -8.6 -4.09685 | GCCGGAGCGCGCGGT GGAGCCGC CGAAGT GCGGCGCC TTTTCGAGGATGACG hsaE 4778859 - 4779644 + | 2-hydroxypentadienoate hydratase hsaG 4779655 - 4780557 + | acetaldehyde dehydrogenase hsaF 4780602 - 4781621 + | 4-hydroxy-2-ketovalerate aldolase RHA1_ro04536 4782038 - 4781661 - | hypothetical protein RHA1_ro04537 4782521 - 4782174 - | hypothetical protein kshA 4783753 - 4782524 - | ketosteroid-9-alpha-hydroxylase, oxygenase hsaA 4783950 - 4785098 + | 3-HSA hydroxylase, oxygenase hsaD 4785107 - 4785985 + | 4,9-DSHA hydrolase hsaC 4785985 - 4786887 + | 3,4-DHSA dioxygenase hsaB 4786884 - 4787471 + | 3-HSA hydroxylase, reductase gabD3 4788923 - 4787475 - | succinate-semialdehyde dehydrogenase (NAD(P)+) gabT2 4789038 - 4790279 + | 4-aminobutyrate transaminase TERM 1651 4790334 - 4790283 - f 100 -24 -3.33737 | overlap 4790286 GACGAAGTGTGACAA GCACCCGTGAGTACTTATTAACCG CGGG CGGTTAAGAAGTACTCACGGGCTC CGAAGGAGGAATCGT TERM 1652 4790331 - 4790286 - f 100 -26.5 -2.83747 | overlap 4790283 GAAGTGTGACAAGCA CCCGTGAGTACTTATTAACCG CGGG CGGTTAAGAAGTACTCACGGG CTCCGAAGGAGGAAT RHA1_ro04545 4790348 - 4790842 + | hypothetical protein RHA1_ro04546 4790914 - 4791735 + | PhzF family phenazine biosynthesis protein RHA1_ro04547 4792898 - 4791738 - | Fe-containing alcohol dehydrogenase RHA1_ro04548 4794401 - 4792911 - | methylmalonate-semialdehyde dehydrogenase (acylating), N-terminal TERM 1653 4794592 - 4794559 - g 89 -18.9 -3.29511 | gap 1 TGGAGTTGTCGAGAA CCG-GCCGCCTCGCCG ATG CGGCGAAGCGACTCGG TGTCGATCACACGAC TERM 1654 4794787 - 4794811 + G 74 -12.9 -3.64162 | GCGGGCTGACGGGCA CCGTCCGGA TCATCAC TCCGGACGG TTTCGGGTCGTTCGT RHA1_ro04549 4794513 - 4795406 + | LysR family transcriptional regulator RHA1_ro04550 4796472 - 4795408 - | LacI family transcription regulator RHA1_ro04551 4797387 - 4796545 - | NADH dehydrogenase RHA1_ro04552 4797930 - 4797403 - | NADH dehydrogenase RHA1_ro04553 4798945 - 4798106 - | sugar phosphate isomerase ilvB2 4800796 - 4798958 - | acetolactate synthase large subunit RHA1_ro04555 4802379 - 4800793 - | choline dehydrogenase TERM 1655 4801920 - 4801963 + g 72 -14.4 -3.22475 | overlap 4801918 AGGGTTCGTCGCGGG GGAGCGTCGGGTCGTCGGTG TGAT CGCCGTGGACCCGGTGCACC TGTTCTGCCCGTGCG aspA3 4803946 - 4802552 - | aspartate ammonia-lyase hisD2 4805268 - 4803943 - | histidinol dehydrogenase RHA1_ro04558 4805272 - 4806942 + | transcriptional regulator RHA1_ro04559 4807156 - 4808445 + | major facilitator transporter TERM 1656 4808464 - 4808499 + F 100 -21.2 -3.86202 | overlap 4808465 TTGCTCTTCCGGTTC TGCGGTCCGGTACCTC TCCC GAGGTGCCGGACCGCC TTTCGTGTCATGAGC TERM 1657 4808465 - 4808498 + F 100 -24.7 -2.914 | overlap 4808464 TGCTCTTCCGGTTCT GCGGTCCGGTACCTC TCCC GAGGTGCCGGACCGC CTTTCGTGTCATGAG TERM 1658 4809174 - 4809219 + G 73 -12.5 -3.41051 | gap 1, opp_overlap 4809155 GGGCGCACGCGTCGA CGATCCGGCACGTCCGGCCTGA CCA TCTGGCGGGACAC-CCGGATCG TTCTCCTCGGCCTGA RHA1_ro04560 4808487 - 4809779 + | major facilitator transporter RHA1_ro04561 4811438 - 4809852 - | dehydrogenase ilvB3 4813222 - 4811435 - | acetolactate synthase large subunit RHA1_ro04563 4813908 - 4813243 - | hypothetical protein RHA1_ro04564 4814118 - 4815200 + | LacI family transcription regulator RHA1_ro04565 4815247 - 4816131 + | 5,10-methylenetetrahydromethanopterin reductase TERM 1659 4816122 - 4816174 + T 100 -30.2 -2.53263 | gap 1, opp_overlap 4816115 4816140 4816142, overlap 4816140 CGTCAAACCTCTTAT CCCG-ACGTGAGTGGGAAAGAGTGC CCGA GCACACTTTCCCACTCACGTGCGGG TCAGTTGCCGGTCGG RHA1_ro04566 4817209 - 4816175 - | proline racemase RHA1_ro04567 4817836 - 4818006 + | hypothetical protein RHA1_ro04568 4818103 - 4820547 + | glycosidase RHA1_ro04569 4820673 - 4821020 + | hypothetical protein RHA1_ro04570 4821128 - 4822666 + | arylsulfatase RHA1_ro04571 4822672 - 4823616 + | hydrolase RHA1_ro04572 4823637 - 4824575 + | hypothetical protein RHA1_ro04573 4824914 - 4824567 - | hypothetical protein RHA1_ro04574 4826401 - 4824911 - | hypothetical protein RHA1_ro04575 4827912 - 4826542 - | putative amidase RHA1_ro04576 4828923 - 4827949 - | phosphoglycerate dehydrogenase RHA1_ro04577 4829004 - 4829747 + | arylmalonate decarboxylase RHA1_ro04578 4829782 - 4830522 + | arylmalonate decarboxylase RHA1_ro04579 4830509 - 4831186 + | GntR family transcriptional regulator RHA1_ro04580 4831223 - 4832137 + | hydroxylase RHA1_ro04581 4832622 - 4832179 - | MarR family transcriptional regulator TERM 1660 4832700 - 4832726 + H 75 -13.7 -3.04144 | opp_overlap 4832694, overlap 4832685 GTGCAACTATTTATA CCGCGCCTGCA ACTAA TGCAGACGCGG TATTCGAGCTAGCGC RHA1_ro04582 4832778 - 4833977 + | major facilitator superfamily sugar transporter RHA1_ro04583 4834951 - 4833980 - | hypothetical protein RHA1_ro04584 4835852 - 4835004 - | hypothetical protein RHA1_ro04585 4838030 - 4836000 - | hypothetical protein RHA1_ro04586 4838881 - 4838153 - | acetoacetate decarboxylase RHA1_ro04587 4839735 - 4838878 - | short chain dehydrogenase RHA1_ro04588 4839853 - 4841046 + | cytochrome P450 CYP142 RHA1_ro04589 4841996 - 4841115 - | 2,5-diketo-D-gluconate reductase TERM 1661 4842406 - 4842435 + G 70 -12.1 -3.33261 | gap 1, opp_overlap 4842395 AACATCGGTCCGACG CGCTTCGT-CGCCG AAC CGGCGTACGCGGCG TTGTGCGAGTTCGCC RHA1_ro04590 4842061 - 4842876 + | hypothetical protein RHA1_ro04591 4843977 - 4842928 - | acyl-CoA dehydrogenase RHA1_ro04592 4844942 - 4843974 - | acyl-CoA dehydrogenase RHA1_ro04593 4846099 - 4844939 - | acyl-CoA dehydrogenase RHA1_ro04594 4846972 - 4846100 - | enoyl-CoA hydratase RHA1_ro04595 4848516 - 4846969 - | CoA ligase TERM 1662 4848528 - 4848551 + GH 74 -11 -3.65991 | TCACTGGGCTCCCTA CCTACCTAGC AAGT GCTTGGTAGG TTATCTTACAGACGT RHA1_ro04596 4848505 - 4849785 + | acyl-CoA dehydrogenase RHA1_ro04597 4849782 - 4850585 + | short chain dehydrogenase RHA1_ro04598 4850677 - 4851291 + | transcriptional regulator RHA1_ro04599 4851305 - 4852453 + | acetyl-CoA acetyltransferase TERM 1663 4852495 - 4852445 - T 100 -25.9 -3.10715 | gap 1, opp_overlap 4852486 GCCACCATCATCGAA CG-CCTGTGAGTACTTGTTAACCG CGGG CGGTTAACAAGTACTCACAGGTCA GGTGCGGGCGTGACC RHA1_ro04600 4853755 - 4852493 - | ATPase RHA1_ro04601 4853896 - 4854225 + | hydrogenase nickel incorporation protein HypA RHA1_ro04602 4854232 - 4855047 + | hydrogenase nickel incorporation protein HypB RHA1_ro04603 4855208 - 4856263 + | Ni-Fe hydrogenase small subunit RHA1_ro04604 4856321 - 4858114 + | Ni-dependent hydrogenase large subunit RHA1_ro04605 4858125 - 4859081 + | nitrogen fixation protein RHA1_ro04606 4859081 - 4859719 + | hypothetical protein RHA1_ro04607 4859716 - 4860363 + | hypothetical protein RHA1_ro04608 4860360 - 4861787 + | hypothetical protein RHA1_ro04609 4861911 - 4862423 + | hydrogenase maturation protease hypC 4862427 - 4862681 + | hydrogenase expression/formation protein RHA1_ro04611 4863482 - 4862691 - | hypothetical protein RHA1_ro04612 4864596 - 4863619 - | NAD-dependent epimerase/dehydratase family protein, 3-beta hydroxysteroid dehydrogenase/isomerase family protein RHA1_ro04613 4864626 - 4865279 + | TetR family transcriptional regulator RHA1_ro04614 4866223 - 4865276 - | A-factor biosynthesis protein TERM 1664 4866302 - 4866283 - R 77 -12.2 -3.59946 | opp_overlap 4866285 4866287 CGCCGAACTATAGAA CACAGACC GCGC GGTCTGTG ATGTGGGGAGTGCGT RHA1_ro04615 4866904 - 4866320 - | hypothetical protein RHA1_ro04616 4867420 - 4866920 - | hypothetical protein RHA1_ro04617 4868265 - 4867417 - | hypothetical protein RHA1_ro04618 4869399 - 4868272 - | hydrogenase expression/ formation protein RHA1_ro04619 4869697 - 4869425 - | hydrogenase expression/ formation protein RHA1_ro04620 4870824 - 4869724 - | hydrogenase expression/ formation RHA1_ro04621 4871513 - 4870821 - | phosphoheptose isomerase RHA1_ro04622 4872259 - 4871510 - | sedoheptulose 7-phosphate isomerase hypF 4874610 - 4872304 - | hydrogenase maturation protein RHA1_ro04624 4875416 - 4874757 - | ATP-dependent Clp protease RHA1_ro04625 4875685 - 4875413 - | transcriptional regulator TERM 1665 4876294 - 4876280 - g 71 -11.4 -3.55444 | GCCGGACCGCGGAAA CGGTGG TCA CCACCG GGCAGGGCAGTGAGG RHA1_ro04626 4875730 - 4876935 + | hypothetical protein RHA1_ro04627 4878503 - 4877007 - | cytochrome P450 CYP102 TERM 1666 4878132 - 4878167 + gF 75 -11.8 -3.53012 | gap 1, opp_overlap 4878120 CAATCCGTCGCCGCC CACCTCGCGCAACGACG CGA CGCCGG-GTGCGAGGTG TTTCGCGAACCGGGA RHA1_ro04628 4878502 - 4879086 + | TetR family transcriptional regulator RHA1_ro04629 4879162 - 4879944 + | hypothetical protein TERM 1667 4880016 - 4879962 - T 77 -14.9 -2.82623 | gap 1, overlap 4879960 4879959 GCGGCTTTACAAGGA CGGGCGATCACATCCCCGGTGCGGCG ACGA CGCC-CACCGGTGATGCGCCCGTCAG GACCGCCGCGACATT RHA1_ro04630 4880928 - 4879969 - | phosphoglycerate dehydrogenase TERM 1668 4880484 - 4880468 - G 72 -5.8 -4.34402 | gap 1, overlap 4880469 4880470 GCGCGCAGAGCAAAA GCGCCGG CGAT CCGGC-C GAATCCGTAGAGGCC RHA1_ro04631 4881554 - 4880925 - | TetR family transcriptional regulator RHA1_ro04632 4883078 - 4881603 - | sodium-solute symporter RHA1_ro04633 4883284 - 4884174 + | LysR family transcriptional regulator RHA1_ro04634 4884445 - 4884182 - | IclR family transcriptional regulator RHA1_ro04635 4886030 - 4884882 - | CoA transferase RHA1_ro04636 4887193 - 4886042 - | acyl-CoA dehydrogenase RHA1_ro04637 4887377 - 4887751 + | hypothetical protein TERM 1669 4887804 - 4887776 - T 93 -18.2 -3.40403 | opp_overlap 4887770 4887768 GGCCTGTCACGACAA CGAGGCCGCACC GCTCG GGTGCGACCTCG TCACAGTGTCATCTG RHA1_ro04638 4888053 - 4887850 - | cold shock protein RHA1_ro04639 4888286 - 4889119 + | hydrolase hutG 4890103 - 4889141 - | formimidoylglutamase hutI 4891323 - 4890100 - | imidazolonepropionase hutU 4893047 - 4891371 - | urocanate hydratase RHA1_ro04643 4894543 - 4893107 - | permease for cytosine/purines, uracil, thiamine, allantoin TERM 1670 4895982 - 4895946 - g 74 -14.3 -3.31144 | overlap 4895949 CCGCGATCGGTACAA CACCCGGACGCGCCTGG CGG CCCAGCGCGTCCTGCTG GACGAACTGGACGGC TERM 1671 4896504 - 4896521 + G 73 -12.7 -3.53343 | GCCGGGGCCGGTGGA CGACGCG CTGC CGCGTCG TTTCACGGAGACGTT RHA1_ro04644 4894750 - 4899468 + | NAD-specific glutamate dehydrogenase TERM 1672 4899494 - 4899543 + F 100 -23.1 -3.2218 | gap 1, opp_overlap 4899519 ACCGCGCGATGAGGG CTTACCCGTGCAGTCGGCCGAT AGACTGC AACGGCCGACTGCACGGG-AAG TTCATCGGTGTTGCA hutC 4899568 - 4900335 + | histidine utilization repressor RHA1_ro04646 4900953 - 4900360 - | transcriptional regulator RHA1_ro04647 4901091 - 4902317 + | hypothetical protein TERM 1673 4902375 - 4902347 - f 70 -13.9 -2.52464 | opp_overlap 4902347 CGGCGGGCGAATGTA CCTTCCGGCGC CTCAGGT GCGCCGAAAGG TACATTCGCCCAGTG RHA1_ro04648 4902434 - 4902715 + | hypothetical protein TERM 1674 4902816 - 4902780 - T 93 -18.9 -3.15544 | gap 1, opp_overlap 4902776 4902780, overlap 4902809 GCCTAGCCGGACGAA CGGGACGCTCGTTGCG TCCGAT CG-AACGAGCGTCCCG TTGGTTCAGGCGCGG TERM 1675 4902780 - 4902816 + T 100 -18.9 -3.33696 | gap 1, opp_overlap 4902780 4902809, overlap 4902776 GCCTAGCCGGACGAA CGGGACGCTCGTTGCG TCCGAT CG-AACGAGCGTCCCG TTGGTTCAGGCGCGG RHA1_ro04649 4903883 - 4902822 - | 2-nitropropane dioxygenase RHA1_ro04650 4904641 - 4903880 - | CoA-transferase beta subunit RHA1_ro04651 4905528 - 4904638 - | CoA-transferase alpha subunit RHA1_ro04652 4906310 - 4905534 - | enoyl-CoA hydratase RHA1_ro04653 4906425 - 4907207 + | short chain dehydrogenase RHA1_ro04654 4907204 - 4908118 + | short chain dehydrogenase RHA1_ro04655 4908225 - 4909127 + | monooxygenase RHA1_ro04656 4909217 - 4910464 + | phosphatidylinositol alpha-mannosyltransferase RHA1_ro04657 4910458 - 4911198 + | methyltransferase RHA1_ro04658 4911195 - 4912283 + | hypothetical protein RHA1_ro04659 4912921 - 4912259 - | hypothetical protein TERM 1676 4912940 - 4912956 + r 88 -11.5 -4.21989 | GCCTCTGCATCCGGG GCGGCCG CTC TGGCCGC TTTCTTCCGCTTGTG RHA1_ro04660 4913310 - 4912918 - | 4-carboxymuconolactone decarboxylase RHA1_ro04661 4914182 - 4913307 - | 2-hydroxy-3-oxopropionate reductase RHA1_ro04662 4914931 - 4914179 - | short chain dehydrogenase RHA1_ro04663 4916417 - 4914948 - | aldehyde dehydrogenase TERM 1677 4915600 - 4915628 + g 71 -11.8 -3.53761 | gap 1, opp_overlap 4915623 CACGCACCGGCGAGG TCGGCG-TCGTCG AGCA CGATGAACGCCGA TTTGCCGCCGAGTTC RHA1_ro04664 4916531 - 4917421 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro04665 4917831 - 4918433 + | hypothetical protein RHA1_ro04666 4919314 - 4918712 - | TetR family transcriptional regulator RHA1_ro04667 4919399 - 4920616 + | cytochrome P450 CYP125 RHA1_ro04668 4920680 - 4921240 + | TetR family transcriptional regulator RHA1_ro04669 4921246 - 4922472 + | cytochrome P450 CYP123 RHA1_ro04670 4922465 - 4923247 + | short chain dehydrogenase RHA1_ro04671 4923247 - 4924599 + | cytochrome P450 CYP51 RHA1_ro04672 4924599 - 4924814 + | ferredoxin RHA1_ro04673 4924814 - 4925392 + | hypothetical protein RHA1_ro04674 4925398 - 4926642 + | hypothetical protein RHA1_ro04675 4926659 - 4928269 + | acyl-CoA synthetase RHA1_ro04676 4928978 - 4928313 - | hypothetical protein RHA1_ro04677 4929566 - 4929081 - | hypothetical protein RHA1_ro04678 4930739 - 4929576 - | acetyl-CoA acetyltransferase RHA1_ro04679 4930741 - 4932156 + | cytochrome P450 CYP125 TERM 1678 4932167 - 4932208 + F 100 -20.2 -3.59023 | opp_overlap 4932153 ACTGACCCCCTGATT CAGCGGCGTCGGAGGGCA CCCTCA TCCTCTCCGGCGCCGCTG TTCTCCTTCTGTCCG TERM 1679 4933178 - 4933155 - g 71 -11 -3.54424 | GGCCATCTGTCGAAA GGCGAAACCC ACTG GGATCTCGCC GGACTGCATCTGCAC RHA1_ro04680 4932243 - 4933499 + | erythromycin esterase RHA1_ro04681 4933923 - 4933510 - | hypothetical protein RHA1_ro04682 4934797 - 4933934 - | hypothetical protein TERM 1680 4934289 - 4934267 - G 70 -12.6 -3.35679 | opp_overlap 4934264 CCCGCCGACGTAGAA CGGCACCGGC TTC GTCGGCGCCG GGCTCATCTGCAGGC RHA1_ro04683 4935988 - 4934813 - | acetyl-CoA acetyltransferase RHA1_ro04684 4937052 - 4935988 - | lipid-transfer protein RHA1_ro04685 4938030 - 4937065 - | hypothetical protein RHA1_ro04686 4938125 - 4939162 + | 5,10-methylenetetrahydromethanopterin reductase RHA1_ro04687 4940086 - 4939220 - | hypothetical protein echA19 4941176 - 4940352 - | enoyl-CoA hydratase fadD19 4941256 - 4942908 + | acyl-CoA synthetase RHA1_ro04690 4942909 - 4944024 + | 2-nitropropane dioxygenase fadD17 4945637 - 4944066 - | acyl-CoA synthetase fadE27 4946755 - 4945634 - | acyl-CoA dehydrogenase fadE26 4947947 - 4946766 - | acyl-CoA dehydrogenase RHA1_ro04694 4948087 - 4948386 + | ferredoxin TERM 1681 4948948 - 4948919 - g 79 -14.9 -3.37612 | GGCAAGTCCAAGGAA GCCGGTGCGCCCG TGTA CGGGCGCATCGTC AACACCTCGTCCGAG fabG 4948490 - 4949407 + | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro04696 4949987 - 4950751 + | hypothetical protein RHA1_ro04697 4950772 - 4951623 + | hypothetical protein mce4A 4951636 - 4952811 + | MCE family protein mce4B 4952814 - 4953830 + | MCE family protein mce4C 4953833 - 4954888 + | MCE family protein mce4D 4954885 - 4956177 + | MCE family protein mce4E 4956174 - 4957391 + | MCE family protein mce4F 4957388 - 4958803 + | MCE family protein RHA1_ro04704 4958800 - 4959543 + | hypothetical protein RHA1_ro04705 4959540 - 4960058 + | hypothetical protein RHA1_ro04706 4960061 - 4960885 + | hypothetical protein RHA1_ro04707 4960974 - 4961984 + | reductase RHA1_ro04708 4963501 - 4961954 - | alpha,alpha-trehalose-phosphate synthase (UDP-forming) RHA1_ro04709 4963708 - 4963535 - | hypothetical protein RHA1_ro04710 4963876 - 4965579 + | bifunctional ABC transporter RHA1_ro04711 4965576 - 4967324 + | ABC bifunctional lipid A exporter TERM 1682 4967395 - 4967337 - T 84 -17.4 -2.71364 | opp_overlap 4967338 4967349 TGACCCCCGCAACCA CGTCGGGTGAATGTGCCGTTCGGCGCTT CTG AGGCGTTGAAAGGCACATTCACCCGGAG ATGGTGTCGGCGCGG TERM 1683 4967338 - 4967396 + T 70 -14.1 -2.62184 | gap 2, opp_overlap 4967337, overlap 4967349 GACCCCCGCAACCAC -GT-CGGGTGAATGTGCCGTTCGGCGCTT CTG AGGCGTTGAAAGGCACATTCACCCGGAGA TGGTGTCGGCGCGGG RHA1_ro04712 4968351 - 4967416 - | methionyl-tRNA formyltransferase TERM 1684 4968442 - 4968432 - H 72 -6.8 -4.28774 | CTATCCAATCTAAAA CGGT GAG ACCG CCCATGGAAGGAAGG RHA1_ro04713 4968462 - 4969265 + | hydrolase RHA1_ro04714 4969344 - 4970543 + | hypothetical protein TERM 1685 4978782 - 4978801 + G 70 -15 -2.80816 | opp_overlap 4978780 4978779, overlap 4978784 CCTGCGGCAGAAGCT CACCCGGC ACGC GCCGGGTG TGTGGTCGCTCGAGA TERM 1686 4980690 - 4980637 - g 80 -15.9 -3.14132 | gap 1, opp_overlap 4980685 GGCGGGCTCGACGAA CCGACGCTGCTGGCCGCGACGGTCGC GGG GGAACCGCAGCCGCC-GCAGCGCCGA GACGCCGTGCTGTCC TERM 1687 4985554 - 4985526 - g 70 -14.5 -2.73364 | opp_overlap 4985539 4985543 CCCCGATCCCAACGA GCAGGCGTACGTC CTC GACGACCGCCTGC AGCCGGTGCCGCCGG RHA1_ro04715 4970833 - 4987611 + | non-ribosomal peptide synthetase TERM 1688 4989017 - 4988975 - g 72 -4.8 -4.42386 | gap 1, opp_overlap 4988992 GCGGCACGGAGAAAA CGCACGGAATCACGTCGTC GCTCCT GTCGA-ATGTTGCCGTGCG GGCGGGAGAGATCGT RHA1_ro04716 4987774 - 4989120 + | L-ornithine 5-monooxygenase RHA1_ro04717 4989117 - 4989368 + | hypothetical protein RHA1_ro04718 4990914 - 4989475 - | amino acid export carrier protein TERM 1689 4989510 - 4989542 + g 100 -25.7 -2.88999 | GTGTTTCGACCGCCT TCCGCCGCCTCGTCT TGA AGACGGGGCGGCGGA TGTCGTCTGTGCGAC RHA1_ro04719 4991293 - 4990916 - | hypothetical protein TERM 1690 4991460 - 4991499 + H 100 -25.2 -3.53444 | opp_overlap 4991464 4991466, overlap 4991462 GGAATTGCCTCCGCA CACAGAGGGCCACCTTCC CCCG GGAAGGTGGCCCTCTGTC TTTCCCGCACGCTCA TERM 1691 4991462 - 4991497 + H 100 -27.8 -3.34517 | opp_overlap 4991464 4991466, overlap 4991460 AATTGCCTCCGCACA CAGAGGGCCACCTTCC CCCG GGAAGGTGGCCCTCTG TCTTTCCCGCACGCT TERM 1692 4991495 - 4991464 - H 100 -24.6 -2.87132 | opp_overlap 4991462 4991460, overlap 4991466 TTGCCTCCGCACACA GAGGGCCACCTTCC CCCG GGAAGGTGGCCCTC TGTCTTTCCCGCACG TERM 1693 4991493 - 4991466 - H 100 -21.4 -2.98823 | opp_overlap 4991462 4991460, overlap 4991464 GCCTCCGCACACAGA GGGCCACCTTCC CCCG GGAAGGTGGCCC TCTGTCTTTCCCGCA RHA1_ro04721 4991584 - 4991787 + | sigma factor, includes region 4 RHA1_ro04722 4993213 - 4991801 - | triacylglycerol lipase RHA1_ro04723 4993949 - 4993314 - | TetR family transcriptional regulator RHA1_ro04724 4994561 - 4993992 - | glycosyl hydrolase, C-terminal RHA1_ro04725 4995753 - 4994938 - | glycosyl hydrolase, N-terminal RHA1_ro04726 4996800 - 4995868 - | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro04727 4996861 - 4997625 + | hypothetical protein RHA1_ro04728 4998359 - 4997610 - | sigma factor, sigma 70 type, group 3 RHA1_ro04729 4999222 - 4999548 + | MerR family transcriptional regulator RHA1_ro04730 4999947 - 4999564 - | hypothetical protein RHA1_ro04731 5000188 - 5000496 + | MerR family transcriptional regulator RHA1_ro04732 5001213 - 5002178 + | hypothetical protein TERM 1694 5002193 - 5002231 + T 100 -23.9 -2.62983 | opp_overlap 5002197, overlap 5002198 5002199 ACGCAACACCGTCGA CGAACTCGCCGGCCCCG CCGCC CGGGGCCGGCGGTTTCG TCGTGTCGCGCTCAG TERM 1695 5002226 - 5002197 - T 89 -18.6 -3.15427 | gap 1, opp_overlap 5002193 5002198 5002199 AACACCGTCGACGAA CTCGCCGGCCCCG CCGCC CGGGGCCGGCG-G TTTCGTCGTGTCGCG TERM 1696 5002198 - 5002226 + T 100 -21 -3.81951 | opp_overlap 5002197, overlap 5002193 5002199 ACACCGTCGACGAAC TCGCCGGCCCCG CCGCC CGGGGCCGGCGG TTTCGTCGTGTCGCG TERM 1697 5002199 - 5002225 + T 100 -22.3 -2.88849 | opp_overlap 5002197, overlap 5002198 5002193 CACCGTCGACGAACT CGCCGGCCCCG CCGCC CGGGGCCGGCG GTTTCGTCGTGTCGC RHA1_ro04733 5002959 - 5002243 - | hypothetical protein RHA1_ro04734 5003010 - 5003342 + | hypothetical protein RHA1_ro04735 5003705 - 5003355 - | hypothetical protein RHA1_ro04736 5004582 - 5003755 - | hypothetical protein TERM 1698 5004357 - 5004345 - G 81 -7.7 -4.61231 | GCAGATCCGCAAAAA GCTGT GCG ACAGC GTCCGAGTCGTACAC RHA1_ro04737 5005427 - 5004624 - | hypothetical protein RHA1_ro04738 5005791 - 5005477 - | quaternary ammonium compound-resistance protein SugE RHA1_ro04739 5005898 - 5006146 + | hypothetical protein TERM 1699 5006182 - 5006206 + F 100 -19.3 -3.34962 | opp_overlap 5006169 5006168 ACTCCGCTCCCGCAA CCCCGCTGTCG GAT CGACGGCGGGG TTGTCCCGTGTGCGA RHA1_ro04740 5006214 - 5006543 + | hypothetical protein phoP 5006644 - 5007351 + | response regulator, two-component system phoR 5007432 - 5008814 + | sensor kinase, two-component system RHA1_ro04743 5009252 - 5008818 - | histidine triad (HIT) protein TERM 1700 5009805 - 5009862 + G 79 -18.4 -2.55351 | gap 1, opp_overlap 5009857, overlap 5009805 CGGGGCATTCGGACC TCGCG-ATCGGTTCCCGCCTCGCCCGC TCGTC GCGGGTGGTCCGGGGACCGAAGCGCGA GTTCATCTCCCGCAG TERM 1701 5009805 - 5009863 + G 70 -12.4 -3.25823 | gap 2, opp_overlap 5009857, overlap 5009805 CGGGGCATTCGGACC -TCGCG-ATCGGTTCCCGCCTCGCCCGC TCGTC GCGGGTGGTCCGGGGACCGAAGCGCGAG TTCATCTCCCGCAGC RHA1_ro04744 5009384 - 5010637 + | glycosyl transferase RHA1_ro04745 5010634 - 5012727 + | hypothetical protein TERM 1702 5012785 - 5012734 - T 100 -20.4 -3.64822 | opp_overlap 5012737, overlap 5012735 ACGTCCTGACCGAAA CCCCCTGTGAGTACTTGTTAACCG CCCG CGGTTAACAAGTACTCACAGCTGT GTCAGACGTCGAACG TERM 1703 5012784 - 5012735 - T 100 -23.9 -2.78679 | opp_overlap 5012737, overlap 5012734 CGTCCTGACCGAAAC CCCCTGTGAGTACTTGTTAACCG CCCG CGGTTAACAAGTACTCACAGCTG TGTCAGACGTCGAAC TERM 1704 5012737 - 5012782 + T 100 -25.1 -2.87931 | opp_overlap 5012735 5012734 TCCTGACCGAAACCC CCTGTGAGTACTTGTTAACCG CCCG CGGTTAACAAGTACTCACAGC TGTGTCAGACGTCGA RHA1_ro04746 5013185 - 5012787 - | hypothetical protein RHA1_ro04747 5013555 - 5013169 - | hypothetical protein RHA1_ro04748 5013656 - 5014795 + | acyl-CoA dehydrogenase RHA1_ro04749 5014918 - 5015706 + | 3-hydroxybutyryl-CoA dehydratase RHA1_ro04750 5015739 - 5016122 + | hypothetical protein TERM 1705 5016686 - 5016657 - g 77 -17.9 -2.52464 | GGCGCCGCGAACCGA TGTCCGCTGAGGC GATC GCCGCAGCGGACA TGGTCAACGACCCGC RHA1_ro04751 5016122 - 5017270 + | thiolase RHA1_ro04752 5017280 - 5018485 + | acyl-CoA dehydrogenase RHA1_ro04753 5018482 - 5019444 + | phosphotransferase RHA1_ro04754 5019471 - 5020697 + | acyl-CoA dehydrogenase RHA1_ro04755 5020694 - 5021455 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro04756 5021493 - 5022254 + | short chain dehydrogenase/reductase family oxidoreductase RHA1_ro04757 5022270 - 5023337 + | alcohol dehydrogenase RHA1_ro04758 5023413 - 5024921 + | synthetase TERM 1706 5025586 - 5025635 + G 90 -16.4 -3.6902 | gap 1, overlap 5025588 5025591 CCAGCACGTTCGCGA CGCCACCCTGCGCATCGTCCGCG CGTAA CGCGGACG-TGTGCGGAGGGGTG GTTTTTCTTACTCTC TERM 1707 5025588 - 5025636 + G 100 -18.3 -5.16841 | gap 2, overlap 5025586 5025591 AGCACGTTCGCGACG CCAC-CCTGCGCAT-CGTCCGCG CGTAA CGCGGACGTGTGCGGAGGGGTGG TTTTTCTTACTCTCG RHA1_ro04759 5024990 - 5025613 + | transcriptional regulator TERM 1708 5025591 - 5025632 + F 86 -18.8 -2.63316 | gap 1, overlap 5025586 5025588 ACGTTCGCGACGCCA CCCTGCGCAT-CGTCCGCG CGTAA CGCGGACGTGTGCGGAGGG GTGGTTTTTCTTACT RHA1_ro04760 5025689 - 5026024 + | hypothetical protein RHA1_ro04761 5026036 - 5027037 + | hypothetical protein TERM 1709 5027971 - 5027996 + G 74 -14.7 -3.02144 | opp_overlap 5027994, overlap 5027953 GAGCTACCTCCGTGA CGGTCGCCTCG TTGT CGAGGAGACCG TGTTCGACGGCCTCG RHA1_ro04762 5027054 - 5028085 + | Zn-binding dehydrogenase TERM 1710 5028104 - 5028144 + T 100 -24.2 -2.91264 | opp_overlap 5028107 5028110, overlap 5028106 5028110 TCCAGCGGCTACACC GAAGAATATGGCCCCCGC ATCAC GCGGGGGCCATATTCGTC TGTCTCGCTCAGGCC TERM 1711 5028106 - 5028142 + T 100 -21 -3.0094 | opp_overlap 5028107 5028110, overlap 5028104 5028110 CAGCGGCTACACCGA AGAATATGGCCCCCGC ATCAC GCGGGGGCCATATTCG TCTGTCTCGCTCAGG TERM 1712 5028141 - 5028107 - T 100 -25.2 -3.1247 | opp_overlap 5028106 5028104 5028110, overlap 5028110 AGCGGCTACACCGAA GAATATGGCCCCCGCA TCA CGCGGGGGCCATATTC GTCTGTCTCGCTCAG TERM 1713 5028110 - 5028138 + T 100 -20.4 -3.35465 | opp_overlap 5028107 5028110, overlap 5028106 5028104 GGCTACACCGAAGAA TATGGCCCCCGC ATCAC GCGGGGGCCATA TTCGTCTGTCTCGCT TERM 1714 5028138 - 5028110 - T 100 -21.1 -3.70773 | opp_overlap 5028110 5028106 5028104, overlap 5028107 GGCTACACCGAAGAA TATGGCCCCCGCA TCA CGCGGGGGCCATA TTCGTCTGTCTCGCT RHA1_ro04763 5028917 - 5028153 - | short-chain dehydrogenase TERM 1715 5028623 - 5028639 + g 71 -11.5 -3.61398 | CGTCGACGGTGGCGA CGCTGCC GAT GGCGGCG TTGTTGACCAAGGCG RHA1_ro04764 5030662 - 5028962 - | iron ABC transporter permease TERM 1716 5029760 - 5029778 + g 71 -11 -3.55761 | overlap 5029746 CCAGGCCGAGCGGCC GGTGTTCG GCG CGAACGCC TTTCCCCCGTGCGTG TERM 1717 5030622 - 5030572 - G 74 -14.1 -3.35934 | gap 2, overlap 5030573 CGAGATACGCCAGAA CCGCCAG--CAGTGCGCCGTACCCG AGT CGGGTACGCCACACCGTACTGACGA CGAACGGACGTGCGC RHA1_ro04765 5031825 - 5030662 - | iron ABC transporter ATP-binding protein TERM 1718 5031880 - 5031866 - R 81 -2.8 -5.00616 | opp_overlap 5031866 5031867 5031877, overlap 5031867 GTTTGTCGGAAAAAA GTGAAC TCA GTTCAT CTTATGATTGCGTCG RHA1_ro04766 5032661 - 5031882 - | short-chain dehydrogenase RHA1_ro04767 5033695 - 5032658 - | iron ABC transporter periplasmic-binding protein TERM 1719 5033045 - 5033084 + g 79 -2 -4.83169 | gap 1, overlap 5033038 5033050 CGGGTAGATTCGCGG CTTCAGCTCCG-CGAGCTT CTG GAGATAGTCGGCGCCGAAG TTTTTCTCGAAGAAT RHA1_ro04768 5034470 - 5033775 - | esterase RHA1_ro04769 5034579 - 5036513 + | 2,4-dienoyl-CoA reductase TERM 1720 5037060 - 5037084 + G 74 -15.7 -3.09452 | overlap 5037065 CACGATTCTCCTCGC CGCGGTGGCCG TGT CGGCCATTGCG TATCTGTTCACGCGT RHA1_ro04770 5036536 - 5037492 + | ABC branched-chain amino acid transporter, permease component TERM 1721 5038614 - 5038602 - g 72 -9.1 -4.07568 | opp_overlap 5038602 5038600 TGGCCGTGCTGAAAA CCGAG GCA CTCGG TGTTCGATTCGGTGG RHA1_ro04771 5037497 - 5040061 + | ABC sugar transporter, ATP-binding component TERM 1722 5040802 - 5040781 - g 74 -13.7 -3.26444 | overlap 5040779 5040777 TGGGTCAACAACACA CCGGTGCCG TATG CGACACCGG ACGAGATCGCGGACA RHA1_ro04772 5040103 - 5040900 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro04773 5042146 - 5040986 - | branched chain amino acid ABC transporter RHA1_ro04774 5042390 - 5043724 + | succinate dehydrogenase TERM 1723 5043707 - 5043752 + T 100 -28.7 -3.02144 | CGAGCGATGCTGTCG CCTGTGAGTACTTGTTAACCG CCCG CGGTTAACAAGTGCTCACAGG TGTTCCCCGACATCC RHA1_ro04775 5044225 - 5043746 - | hypothetical protein RHA1_ro04776 5045187 - 5044213 - | hypothetical protein purD 5045441 - 5046694 + | phosphoribosylamine--glycine ligase TERM 1724 5046718 - 5046756 + T 100 -34.8 -2.79796 | overlap 5046720 CACTCCGACGACTGA CAGGCGTGCACCCCCGGA AGA TCCGGGGGTGCACGCCTG TCTCGTCACCTCAGC TERM 1725 5046720 - 5046754 + T 100 -31.6 -2.94747 | overlap 5046718 CTCCGACGACTGACA GGCGTGCACCCCCGGA AGA TCCGGGGGTGCACGCC TGTCTCGTCACCTCA RHA1_ro04778 5047519 - 5046767 - | dehydrogenase RHA1_ro04779 5048904 - 5047516 - | major facilitator transporter RHA1_ro04780 5049036 - 5049944 + | LysR family transcriptional regulator RHA1_ro04781 5049968 - 5051134 + | aspartate aminotransferase RHA1_ro04782 5051236 - 5051523 + | hypothetical protein RHA1_ro04783 5051580 - 5051993 + | hypothetical protein RHA1_ro04784 5052101 - 5052697 + | hypothetical protein RHA1_ro04785 5052789 - 5053469 + | hypothetical protein RHA1_ro04786 5053890 - 5054519 + | hypothetical protein purB 5054542 - 5055963 + | adenylosuccinate lyase RHA1_ro04788 5056041 - 5056454 + | histidine triad (HIT) protein RHA1_ro04789 5057252 - 5056488 - | hypothetical protein TERM 1726 5057204 - 5057181 - G 70 -12.4 -3.28712 | overlap 5057182 GGGGCGGGCGTAGAA CTCGTCGCGG TTGG CCGCGACGAC GAGGGGGAGATCGGG TERM 1727 5057203 - 5057182 - G 73 -15.9 -2.57132 | overlap 5057181 GGGCGGGCGTAGAAC TCGTCGCGG TTGG CCGCGACGA CGAGGGGGAGATCGG RHA1_ro04790 5057351 - 5057830 + | transcriptional regulator RHA1_ro04791 5057830 - 5058672 + | ABC transporter, ATP-binding component RHA1_ro04792 5058689 - 5059450 + | ABC transporter, permease component RHA1_ro04793 5061113 - 5059461 - | 2,3-dihydroxybenzoate-AMP ligase/ S-dihydroxybenzoyltransferase dhbA 5061919 - 5061149 - | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase dhbC 5063058 - 5061916 - | isochorismate synthase RHA1_ro04796 5063319 - 5064269 + | AsnC family transcriptional regulator RHA1_ro04797 5064421 - 5064696 + | hypothetical protein TERM 1728 5064791 - 5064771 - g 71 -11.1 -3.55444 | GGTGGACGCCGGAAA CGCGCTCAG AAC CTGAGCGAG TGGACGGTCGGCACG RHA1_ro04798 5064693 - 5066162 + | Na+/solute symporter RHA1_ro04799 5066162 - 5067595 + | amidase pyk4 5068925 - 5067585 - | pyruvate kinase TERM 1729 5068323 - 5068346 + g 86 -6.6 -4.87318 | overlap 5068273 GGCGCGCACGATCGC CTCGATGTCG TCGA CGGCTTCGGG TTTTTCGATTTTCGC RHA1_ro04801 5070193 - 5069063 - | glycerate kinase RHA1_ro04802 5071694 - 5070228 - | C4-dicarboxylate transporter RHA1_ro04803 5072918 - 5071824 - | 3-isopropylmalate dehydrogenase RHA1_ro04804 5073121 - 5074053 + | LysR family transcriptional regulator RHA1_ro04805 5075700 - 5074099 - | major facilitator superfamily multidrug resistance protein RHA1_ro04806 5075852 - 5076202 + | hypothetical protein RHA1_ro04807 5077071 - 5076214 - | hypothetical protein RHA1_ro04808 5077142 - 5078635 + | hypothetical protein RHA1_ro04809 5079275 - 5078676 - | hypothetical protein RHA1_ro04810 5079699 - 5079325 - | hypothetical protein TERM 1730 5079757 - 5079777 + r 71 -10.4 -3.61398 | GTCGCCACAGGCACC GGCGGGCT GATAG AGCTCGCC TTCTTCCGGGCCCAG RHA1_ro04811 5080664 - 5079921 - | hypothetical protein RHA1_ro04812 5081739 - 5080705 - | phosphoglycerate dehydrogenase TERM 1731 5081209 - 5081264 + g 70 -9.1 -3.84246 | gap 3, overlap 5081213 GAGTTCCGCTGTGCG CGAGCCGATCTTGCCTG-CGCCCACG ACGAGCG CGTG-GCGTCCGGCGAGCTCGG-TCG TTTCCTGCTTGCGCC RHA1_ro04813 5083198 - 5081750 - | major facilitator superfamily multidrug resistance protein RHA1_ro04814 5084252 - 5083296 - | AraC family transcriptional regulator RHA1_ro04815 5084460 - 5085113 + | hypothetical protein RHA1_ro04816 5085125 - 5085433 + | hypothetical protein purC 5085445 - 5086329 + | phosphoribosylaminoimidazole-succinocarboxamide synthase RHA1_ro04818 5086333 - 5088462 + | oligopeptidase B RHA1_ro04819 5089459 - 5088908 - | hypothetical protein RHA1_ro04820 5090231 - 5089542 - | regulator relate RHA1_ro04821 5091847 - 5090228 - | sensor kinase, two-component system TERM 1732 5091570 - 5091549 - G 71 -10.1 -3.80841 | ATCACGACGATGAAA TCGGTGCCG GTCG CGGCACGGA TCCGCTCGGTCTGGG dctA2 5091954 - 5093339 + | C4-dicarboxylate transporter TERM 1733 5093354 - 5093403 + F 100 -26.7 -3.10409 | opp_overlap 5093358, overlap 5093358 ACACCCACTCCGAAG TAAACCTCTGTGCGCCCGGGC GATTCGAA GCCTGGGCGCACAGAGGTTTG TTGGCTACGTTGGTG TERM 1734 5093399 - 5093358 - f 100 -23.1 -3.91084 | opp_overlap 5093354 5093358 CCACTCCGAAGTAAA CCTCTGTGCGCCCGGGC GATTCGAA GCCTGGGCGCACAGAGG TTTGTTGGCTACGTT TERM 1735 5093358 - 5093399 + F 100 -25.3 -4.21631 | opp_overlap 5093358, overlap 5093354 CCACTCCGAAGTAAA CCTCTGTGCGCCCGGGC GATTCGAA GCCTGGGCGCACAGAGG TTTGTTGGCTACGTT RHA1_ro04823 5093413 - 5093916 + | glutathione peroxidase TERM 1736 5093929 - 5093976 + F 100 -30.9 -3.7948 | overlap 5093927 5093919 5093971 TAGTAGGCGCTCCGC GCTCGTGCGCCTTTTCGGTAG CTCCCA CTACCGGAAAGGCGCACGAGC TTTGCTCGCTGTTCA RHA1_ro04824 5094016 - 5094720 + | hypothetical protein RHA1_ro04825 5095418 - 5094771 - | hypothetical protein RHA1_ro04826 5095508 - 5095789 + | hypothetical protein purQ 5095786 - 5096463 + | phosphoribosylformylglycinamidine synthase subunit I RHA1_ro04828 5096802 - 5096509 - | WhiB family transcriptional regulator RHA1_ro04829 5097507 - 5096860 - | methyltransferase TERM 1737 5097110 - 5097130 + g 81 -12.5 -3.91716 | opp_overlap 5097108 5097106 GCCTCGCAACAGATC CGGTCGAGC AGT GCGCGACCG TTCTTTCCCGCGTCC TERM 1738 5097535 - 5097584 + H 85 -16.3 -2.93723 | overlap 5097531 GGTCGCCGGTCGCAT CGTGGTGCGTCCACGGTGTGCCC TCGC GGACCCACCGTGGACGCCGTGCG TCTGATTACTCCACA RHA1_ro04830 5097704 - 5099809 + | 4-alpha-glucanotransferase RHA1_ro04831 5100409 - 5099819 - | TetR family transcriptional regulator TERM 1739 5101374 - 5101331 - g 86 -23.2 -2.64243 | GCAGATCGGACAGCA CGTCGACGTCGCCGAACTCG GGAC CGTGCCCGGCAACGTCGACG TCCACCGGTGGGTGC RHA1_ro04832 5100510 - 5101709 + | glycosyltransferase RHA1_ro04833 5101750 - 5102103 + | hypothetical protein RHA1_ro04834 5102117 - 5103412 + | putative aminopeptidase 2 purL 5103556 - 5105841 + | phosphoribosylformylglycinamidine synthase II RHA1_ro04836 5105845 - 5107614 + | hypothetical protein RHA1_ro04837 5107611 - 5108255 + | protease RHA1_ro04838 5108260 - 5108646 + | hypothetical protein RHA1_ro04839 5109966 - 5108647 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1740 5111201 - 5111162 - g 71 -10.6 -3.71848 | GGGTCTGATGAAGAA CGCCTACGTCGGCCGCAC GTTC ATCCAGCCGTCGCAGACG ATCCGCCAGCTCGGT TERM 1741 5111664 - 5111639 - g 70 -9 -3.9392 | GTCGATCGGAAAGAA CGTTCTCGAG GGAATG CTCGAGAGCG CGGCAGGCGGTCCCG purF 5110140 - 5111723 + | amidophosphoribosyltransferase purM 5111844 - 5112923 + | phosphoribosylaminoimidazole synthetase TERM 1742 5112982 - 5113021 + T 100 -25.2 -3.68325 | opp_overlap 5112987, overlap 5112983 5112987 ACCGGCTGAAGATGT GGAAATGAGGGGGAGCCG GTAT CGGCTCCCCCTCATTTCG TTGTCTTCAGATCTC TERM 1743 5112983 - 5113020 + T 100 -28.7 -2.80513 | opp_overlap 5112987, overlap 5112982 5112987 CCGGCTGAAGATGTG GAAATGAGGGGGAGCCG GTAT CGGCTCCCCCTCATTTC GTTGTCTTCAGATCT TERM 1744 5112987 - 5113016 + T 100 -23.7 -4.08221 | opp_overlap 5112987, overlap 5112983 5112982 CTGAAGATGTGGAAA TGAGGGGGAGCCG GTAT CGGCTCCCCCTCA TTTCGTTGTCTTCAG TERM 1745 5113016 - 5112987 - T 100 -23.7 -3.6106 | opp_overlap 5112987 5112983 5112982 CTGAAGATGTGGAAA TGAGGGGGAGCCG GTAT CGGCTCCCCCTCA TTTCGTTGTCTTCAG RHA1_ro04842 5113235 - 5113035 - | hypothetical protein TERM 1746 5113258 - 5113287 + r 71 -9.2 -3.74345 | overlap 5113253 CCCCTCGCGCTTTCG CGGGGCGGCC TGGGGAATTT GGCGGCCCCG TTTGAGTGTGTAAGT RHA1_ro04843 5114370 - 5113417 - | hypothetical protein RHA1_ro04844 5115035 - 5114367 - | hypothetical protein RHA1_ro04845 5116153 - 5115032 - | hypothetical protein RHA1_ro04846 5116129 - 5117088 + | 4-amino-4-deoxychorismate lyase TERM 1747 5117113 - 5117149 + FH 85 -12.3 -4.09685 | opp_overlap 5117117, overlap 5117116 TACATTTCGTAGTAG CAAAGTCCTGCGGGG GAAACGA CCCCGCAGTACGTTG TTTTCAAGGGTCGGG TERM 1748 5117116 - 5117146 + FH 72 -8.2 -4.17762 | opp_overlap 5117117, overlap 5117113 ATTTCGTAGTAGCAA AGTCCTGCGGGG GAAACGA CCCCGCAGTACG TTGTTTTCAAGGGTC TERM 1749 5117145 - 5117117 - fH 77 -11.7 -3.78775 | opp_overlap 5117116 5117113 TTTCGTAGTAGCAAA GTCCTGCGGGG GAAACGA CCCCGCAGTAC GTTGTTTTCAAGGGT RHA1_ro04847 5117222 - 5118718 + | cytochrome bd ubiquinol oxidase subunit I RHA1_ro04848 5118730 - 5119767 + | cytochrome bd ubiquinol oxidase subunit II cydD 5119764 - 5121476 + | transport ATP-binding protein CydD cydC 5121466 - 5123145 + | transport ATP-binding protein CydC RHA1_ro04851 5124497 - 5123388 - | hypothetical protein TERM 1750 5123925 - 5123894 - G 73 -16.6 -2.62616 | gap 1 TGACCGCCGACACGA GGAGCCGTGCGGCCG CGA CCGCCG-ACGGCTCC GCGACAGCGAGATCG RHA1_ro04852 5125225 - 5124584 - | hypothetical protein RHA1_ro04853 5125401 - 5125303 - | hypothetical protein RHA1_ro04854 5125549 - 5126841 + | hypothetical protein TERM 1751 5126852 - 5126893 + T 100 -30.3 -2.80113 | opp_overlap 5126855 5126858, overlap 5126855 5126858 AGTAGAGTCCGCACG ACAGAAGGGCCCCGCTCCG GATG CGGAGCGGGGCCCTTCTGG TGTCGTCAGCTGGTG TERM 1752 5126855 - 5126890 + T 100 -30.6 -2.66634 | opp_overlap 5126855 5126858, overlap 5126852 5126858 AGAGTCCGCACGACA GAAGGGCCCCGCTCCG GATG CGGAGCGGGGCCCTTC TGGTGTCGTCAGCTG TERM 1753 5126890 - 5126855 - T 100 -30.6 -2.78935 | opp_overlap 5126852 5126855 5126858, overlap 5126858 AGAGTCCGCACGACA GAAGGGCCCCGCTCCG GATG CGGAGCGGGGCCCTTC TGGTGTCGTCAGCTG TERM 1754 5126887 - 5126858 - T 100 -26.5 -3.54475 | opp_overlap 5126858 5126855 5126852, overlap 5126855 GTCCGCACGACAGAA GGGCCCCGCTCCG GATG CGGAGCGGGGCCC TTCTGGTGTCGTCAG TERM 1755 5126858 - 5126887 + T 100 -26.5 -3.484 | opp_overlap 5126855 5126858, overlap 5126855 5126852 GTCCGCACGACAGAA GGGCCCCGCTCCG GATG CGGAGCGGGGCCC TTCTGGTGTCGTCAG RHA1_ro04855 5127215 - 5126910 - | hypothetical protein RHA1_ro04856 5128055 - 5127219 - | thiosulfate sulfurtransferase RHA1_ro04857 5128575 - 5128123 - | hypothetical protein RHA1_ro04858 5129289 - 5128813 - | thioredoxin RHA1_ro04859 5130065 - 5129286 - | hypothetical protein TERM 1756 5130112 - 5130160 + H 75 -14.5 -2.69151 | gap 1, opp_overlap 5130144, overlap 5130110 5130110 GTGTCGGTGCGACCT CCGCGCCGCTTGCCGGGGTTCG GTGCAA CGAACGCCGAC-GGCGGCGCGC TACTCTGTCACCGAC glnR 5130259 - 5131029 + | transcriptional regulator RHA1_ro04861 5131026 - 5131943 + | acetyltransferase TERM 1757 5132596 - 5132580 - g 70 -12.3 -3.30124 | CGCGATCGCCTACAA CCTCGAC GGC GTCGAGG ACCTGGTGCTGAACG pstS 5132158 - 5133276 + | ABC phosphate transporter, substrate-binding component TERM 1758 5133738 - 5133767 + G 72 -13.7 -3.13522 | gap 1, overlap 5133736 TGTTCGCTCTGGTCC TCGCGATGCCG-GT CGC ACTCGGTATCGCGA TCTTCCTCACCGAGT pstC 5133332 - 5134417 + | ABC phosphate transporter, permease component pstA 5134421 - 5135329 + | ABC phosphate transporter, permease component pstB 5135373 - 5136149 + | ABC phosphate transporter, ATP-binding protein TERM 1759 5136200 - 5136161 - T 100 -25.1 -3.4376 | opp_overlap 5136161 5136167, overlap 5136167 ATAGAGCGAGCACAA CGAGAACGCCCCGGCCG GTACTG CGGTCGGGGCGTTCTCG TGTCTGCGGAAGGCG TERM 1760 5136161 - 5136200 + T 100 -27.3 -2.87132 | opp_overlap 5136161 5136167, overlap 5136167 ATAGAGCGAGCACAA CGAGAACGCCCCGGCCG GTACTG CGGTCGGGGCGTTCTCG TGTCTGCGGAAGGCG TERM 1761 5136167 - 5136194 + T 93 -17.7 -3.49777 | opp_overlap 5136167 5136161, overlap 5136161 CGAGCACAACGAGAA CGCCCCGGCCG GTACTG CGGTCGGGGCG TTCTCGTGTCTGCGG TERM 1762 5136194 - 5136167 - T 90 -15.5 -3.57783 | opp_overlap 5136161 5136167, overlap 5136161 CGAGCACAACGAGAA CGCCCCGGCCG GTACTG CGGTCGGGGCG TTCTCGTGTCTGCGG TERM 1763 5136233 - 5136291 + T 71 -13.4 -3.03338 | gap 4, opp_overlap 5136242 CTCGGGTGGCCTCGG C----CGAACGAACGGGACGCTCGTACGGT CTG ACCGTACGAGCGTCCCGTTCGCGCGAAAAG TGTTGGGGGAGTTCT TERM 1764 5136278 - 5136242 - T 100 -31.1 -3.33696 | opp_overlap 5136233 CCTCGGCCGAACGAA CGGGACGCTCGTACGGT CTG ACCGTACGAGCGTCCCG TTCGCGCGAAAAGTG phoU2 5137003 - 5136305 - | phosphate transport system protein PhoU RHA1_ro04867 5139134 - 5137086 - | LytR family transcriptional regulator TERM 1765 5138886 - 5138902 + g 70 -15.1 -2.78384 | overlap 5138871 CCCACCCGCGGCCCG GCGGCCG ATC CGGCCGC TGTCGTGGCGGGACG RHA1_ro04868 5140396 - 5139254 - | tRNA-dihydrouridine synthase TERM 1766 5139573 - 5139626 + g 74 -15.3 -3.05596 | gap 1, overlap 5139580 5139581 AGTTCCGCGTGCCGG CGGATGATCGTGG-CCACCTCGCCGA GAT TCGGCGGAGTGGGCTGCGGTTTTCCG TTCAGTGCCGCGCTC TERM 1767 5139580 - 5139619 + g 85 -11.4 -4.28774 | gap 1, overlap 5139573 5139581 CGTGCCGGCGGATGA TCGTGG-CCACCTCGCCGA GAT TCGGCGGAGTGGGCTGCGG TTTTCCGTTCAGTGC TERM 1768 5140423 - 5140466 + r 70 -13.8 -2.64144 | opp_overlap 5140428 5140445, overlap 5140420 5140424 GCGAAAGTGCTGGAA CGAAACTGTGCCCGGTACCG AATC CGGTACCGGGCACAGGATAA CTGTTTACGTCACGA TERM 1769 5140424 - 5140467 + r 70 -11.1 -3.40597 | gap 2, opp_overlap 5140428 5140445, overlap 5140423 5140420 CGAAAGTGCTGGAAC G--AAACTGTGCCCGGTACCG AATC CGGTACCGGGCACAGGATAAC TGTTTACGTCACGAA TERM 1770 5140461 - 5140428 - R 100 -26.9 -3.90291 | opp_overlap 5140423 5140424 5140420, overlap 5140445 AGTGCTGGAACGAAA CTGTGCCCGGTACCG AATC CGGTACCGGGCACAG GATAACTGTTTACGT RHA1_ro04869 5141456 - 5140476 - | acyl-[acyl-carrier protein] desaturase TERM 1771 5141801 - 5141847 + r 91 -14.9 -3.90744 | opp_overlap 5141802, overlap 5141804 ACCCCAGGTGTGAAT ATCGCCACCCGGGGGCGGCGG TGGCC CCGCCGCCCCCGGGGACCTAC TTCTTTCCGCCGCCC TERM 1772 5141846 - 5141802 - R 100 -20.6 -3.03124 | opp_overlap 5141801 5141804 CCCCAGGTGTGAATA TCGCCACCCGGGGGCGGCGG TGGCC CCGCCGCCCCCGGGGACCTA CTTCTTTCCGCCGCC TERM 1773 5141804 - 5141844 + r 100 -21 -3.02371 | opp_overlap 5141802, overlap 5141801 CCAGGTGTGAATATC GCCACCCGGGGGCGGCGG TGGCC CCGCCGCCCCCGGGGACC TACTTCTTTCCGCCG RHA1_ro04870 5142431 - 5141844 - | hypothetical protein RHA1_ro04871 5142498 - 5142938 + | hypothetical protein RHA1_ro04872 5142935 - 5143537 + | hypothetical protein RHA1_ro04873 5144631 - 5143543 - | alcohol dehydrogenase RHA1_ro04874 5145111 - 5144638 - | hypothetical protein TERM 1774 5145603 - 5145587 - g 75 -10.1 -4.07568 | CGCTGCGGCCCAAAA TCGCCGA GAT CCGGCGA GGTCAGCAGGAGGGG RHA1_ro04875 5145220 - 5145825 + | TetR family transcriptional regulator TERM 1775 5146017 - 5145980 - f 70 -5.3 -4.36914 | opp_overlap 5146016, overlap 5145982 5145985 CGGTGGCCGAGAAAA CAGGACCCCCGGCACGG CGCG CCGCGCGGGGGGTGAAA TGGGTCGGCTCGGGT TERM 1776 5146015 - 5145982 - f 74 -10.1 -3.79419 | overlap 5145980 5145985 GTGGCCGAGAAAACA GGACCCCCGGCACGG CGCG CCGCGCGGGGGGTGA AATGGGTCGGCTCGG TERM 1777 5146012 - 5145985 - f 81 -16.2 -2.98387 | overlap 5145982 5145980 GCCGAGAAAACAGGA CCCCCGGCACGG CGCG CCGCGCGGGGGG TGAAATGGGTCGGCT TERM 1778 5146016 - 5146067 + F 100 -24.4 -3.33737 | opp_overlap 5145980 5146018, overlap 5146017 CCGCGCGGGGGGTGA AATGGGTCGGCTCGGGTGCGCACC CCCT GCAGCGCACCCGAGCCGACCCAAA TTATACCACTTGGTG TERM 1779 5146017 - 5146066 + F 100 -27.9 -2.59921 | opp_overlap 5146018, overlap 5146016 CGCGCGGGGGGTGAA ATGGGTCGGCTCGGGTGCGCACC CCCT GCAGCGCACCCGAGCCGACCCAA ATTATACCACTTGGT TERM 1780 5146065 - 5146018 - f 100 -31.4 -3.53012 | opp_overlap 5146017 5146016 GCGCGGGGGGTGAAA TGGGTCGGCTCGGGTGCGCACC CCCT GCAGCGCACCCGAGCCGACCCA AATTATACCACTTGG RHA1_ro04877 5146196 - 5146924 + | TetR family transcriptional regulator TERM 1781 5147451 - 5147421 - T 76 -14.1 -3.08464 | opp_overlap 5147422, overlap 5147437 CCACGATTCACCGAA GCTCCGTTGTCGA GAACG TCGACAACGGAGT TTTTTCGTCGTCCGT TERM 1782 5147422 - 5147450 + T 100 -17.6 -5.1861 | opp_overlap 5147421 5147437 CACGATTCACCGAAG CTCCGTTGTCGA GAACG TCGACAACGGAG TTTTTTCGTCGTCCG RHA1_ro04881 5147803 - 5147471 - | hypothetical protein RHA1_ro04882 5147890 - 5148588 + | TetR family transcriptional regulator RHA1_ro04883 5149469 - 5148585 - | hydrolase RHA1_ro04884 5149545 - 5150246 + | TetR family transcriptional regulator RHA1_ro04885 5150988 - 5150251 - | ABC branched-chain amino acid transporter, ATP-binding component RHA1_ro04886 5152808 - 5150985 - | ABC amino acid transporter, ATP-binding TERM 1783 5151017 - 5151036 + g 74 -15 -3.09878 | overlap 5151031 CGGCCAGTTCCGTGC CCTCGGCG ACCA CGCCGAGG TATTCGCTGAGTACG TERM 1784 5151335 - 5151305 - G 74 -13.2 -3.31144 | opp_overlap 5151303 GGGCGACCTCGAGAA GCCTCCGCATTCCC AGG GGAAGTGCGGTGGC GGTCTCGTCGCGGAG TERM 1785 5151380 - 5151411 + g 76 -13.6 -3.40403 | CGATGTCGAGCGCGC GTTCCGCCTCGGCG ATAT CGCCGGCGCGGACC TTGTGGTGGCGGGGA TERM 1786 5151843 - 5151878 + g 71 -11.8 -3.55622 | gap 1 TGTTCGACTGCCGGT CAGGCCTGCCGCCCGGT CCA ACCGCGCCGT-GGCCTG TTTGGCGACCTTCGC RHA1_ro04887 5153669 - 5152812 - | ABC amino acid transporter, permease component RHA1_ro04888 5154909 - 5153692 - | ABC amino acid transporter, substrate-binding component RHA1_ro04889 5155853 - 5155029 - | short chain dehydrogenase TERM 1787 5155873 - 5155893 + r 71 -8.1 -4.12532 | overlap 5155875 CGACCGTAGGGCCGT CGCCGGCCG CCT CGGCCCGGG TTTCTCTCTCAGCGG RHA1_ro04890 5156977 - 5155916 - | hypothetical protein RHA1_ro04891 5157786 - 5157004 - | short-chain dehydrogenase TERM 1788 5157115 - 5157081 - G 70 -12 -3.29704 | overlap 5157077 5157079 TCGCGAGGAAACAGA CCGCCTCGGCAACGTC GAC GGCGGTGCCGAACCGG CGTAACGGTATCCGG RHA1_ro04892 5157925 - 5158662 + | hypothetical protein RHA1_ro04893 5159560 - 5158676 - | universal stress protein RHA1_ro04894 5161142 - 5159607 - | hypothetical protein TERM 1789 5161197 - 5161181 - R 73 -9.4 -3.90744 | GGCCGGGGGAAAGAA GCCGAG GTCAG CTCGGC CAGTCGAGGCTACGG RHA1_ro04895 5162204 - 5161188 - | pseudouridylate synthase RHA1_ro04896 5162227 - 5164269 + | hypothetical protein RHA1_ro04897 5164310 - 5165188 + | protochlorophyllide reductase RHA1_ro04898 5165632 - 5165210 - | organic hydroperoxide resistance protein TERM 1790 5165269 - 5165285 + g 70 -12.3 -3.3785 | TGGCGTTGGAGTAGG GGCACAC CTG GTGTGCC TTCTCGGTCAGTTCG TERM 1791 5165404 - 5165360 - G 77 -14.7 -3.12668 | GACGGCGAGACCGAA GCCGCCGCCGTCCGTGGCGCC GAT GCCGACGCGGGCGCCGACGGC GGAGTCGGCGACGTT RHA1_ro04899 5166105 - 5165629 - | MarR family transcriptional regulator TERM 1792 5165752 - 5165788 + gH 100 -15.8 -4.1899 | gap 1, overlap 5165752 CTGAGCGAGTTCCGC GGG-GATGCCCTCCGCG GCGG CGCGGAGGGCCGCGCCC TTTTCGGTGAGGTGG TERM 1793 5165752 - 5165787 + gH 82 -16 -3.11073 | overlap 5165752 CTGAGCGAGTTCCGC GGGGATGCCCTCCGCG GCGG CGCGGAGGGCCGCGCC CTTTTCGGTGAGGTG fabG 5166098 - 5167078 + | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro04901 5167080 - 5168375 + | monooxygenase RHA1_ro04902 5168496 - 5169899 + | magnesium citrate transporter CitM RHA1_ro04903 5170223 - 5170567 + | hypothetical protein RHA1_ro04904 5171040 - 5170636 - | hypothetical protein RHA1_ro04905 5172497 - 5171571 - | dioxygenase RHA1_ro04906 5173390 - 5172509 - | hypothetical protein RHA1_ro04907 5174700 - 5173429 - | major facilitator transporter RHA1_ro04908 5176203 - 5174839 - | hypothetical protein RHA1_ro04909 5176297 - 5177220 + | LysR family transcriptional regulator TERM 1794 5177233 - 5177277 + T 100 -20.8 -3.90112 | opp_overlap 5177230 5177229 TGAGTGCAGAACCCG TGTGGGTAGGGTCGTCTCGG GTACA CCGAGACGACCCTCCCGGCA TTTCATTCGACGGCG RHA1_ro04910 5178779 - 5177280 - | monooxygenase RHA1_ro04911 5179721 - 5178786 - | esterase TERM 1795 5179271 - 5179260 - G 81 -7.2 -4.66953 | overlap 5179261 5179262 GTAACATCCGAAAAA GCCG ACAG CGGC CTGCACGGGTGGACC TERM 1796 5179543 - 5179506 - G 74 -12.6 -3.59979 | opp_overlap 5179506, overlap 5179507 GCTCGCGACGGCAAA TCCGTGCCGCGCGAGC CGCTCC GCCCGCGCGGCATGAC TCTTGCGAGAGCCGA TERM 1797 5179542 - 5179507 - G 74 -16.1 -2.75844 | opp_overlap 5179506, overlap 5179506 CTCGCGACGGCAAAT CCGTGCCGCGCGAGC CGCTCC GCCCGCGCGGCATGA CTCTTGCGAGAGCCG RHA1_ro04912 5179772 - 5180548 + | hypothetical protein RHA1_ro04913 5182888 - 5180567 - | ABC transporter, ATP-binding component RHA1_ro04914 5183022 - 5183786 + | hypothetical protein RHA1_ro04915 5183878 - 5185494 + | monooxygenase RHA1_ro04916 5187487 - 5185463 - | amino acid transporter TERM 1798 5187573 - 5187553 - H 71 -8.1 -4.18018 | overlap 5187554 TCCCGCTACCGAAAA GGCGCACGG GTG CGGAGCGCC TGTCCGCGATGGTCG RHA1_ro04917 5187582 - 5187980 + | hypothetical protein TERM 1799 5187980 - 5188000 + F 71 -7.6 -4.08767 | AGGGTTGGCACGTTA GTTGAGTG ATTAA CGCTCAAC TTTTAGGAGGCTGAG TERM 1800 5189038 - 5189013 - g 73 -12.5 -3.41013 | CAAGCACATCGAGAA GGATCCGGCGC TCGA ACGCCGGTTCC AGCCGGTGACGGTTG clpC2 5188018 - 5190441 + | ATP-binding subunit of ATP-dependent Clp protease TERM 1801 5190449 - 5190490 + T 100 -33.3 -2.91264 | TCGGCTGATCCCCGA CGTGAGTGGCAGAGCGTGC TTCG GCACGCTCTGCCACTCACG TGTGTGGGTAGCCCC RHA1_ro04919 5191172 - 5190705 - | hypothetical protein RHA1_ro04920 5191461 - 5191159 - | hypothetical protein TERM 1802 5191336 - 5191349 + g 71 -9.5 -3.74693 | AGAGATATCTCGGTG GGCGC TCAT GCGCC TTTCGTCGAGTCGAA TERM 1803 5191920 - 5191946 + G 82 -15 -3.41602 | TCGGGAAGATCGTCC CCCTGCCCGCGG GAT CGGCGGGCCGGG TTCTGCTCGCCTGGA RHA1_ro04921 5191496 - 5192281 + | IclR family transcriptional regulator RHA1_ro04922 5193239 - 5192247 - | glycerate kinase TERM 1804 5193120 - 5193095 - G 70 -12.5 -3.31144 | GGGGGACGGTGAGAA CGTCGAGGGTG CCCT CACCCCCGTCG GCGACCGGCAGCCGG RHA1_ro04923 5194231 - 5193236 - | glyoxylate reductase RHA1_ro04924 5195166 - 5194228 - | hydroxymethylglutaryl-CoA lyase RHA1_ro04925 5196416 - 5195163 - | CoA-transferase RHA1_ro04926 5197881 - 5196442 - | gluconate permease TERM 1805 5197850 - 5197830 - G 73 -12.5 -3.45023 | opp_overlap 5197830 5197837, overlap 5197814 GCACGATCATCAGAA CGACCGCCG CTA CGGCGACCG TGGTGTTGATCAGGA RHA1_ro04927 5198005 - 5199012 + | AraC family transcriptional regulator metE2 5201317 - 5199056 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase RHA1_ro04929 5202106 - 5201471 - | ABC transporter, ATP-binding protein RHA1_ro04930 5202564 - 5202220 - | ABC transporter, ATP-binding protein RHA1_ro04931 5202807 - 5203895 + | phospho-2-dehydro-3-deoxyheptonate aldolase RHA1_ro04932 5204543 - 5203896 - | hypothetical protein TERM 1806 5204709 - 5204759 + r 70 -11.1 -3.37796 | gap 1, opp_overlap 5204693 5204694, overlap 5204732 CCGGGGAACGGCGGC GGTTACCG-CGGCACCGCCGGC TCGCGGTC GTCGCCGGTGTCGACGGTCGCC TTCTGCCTGCTCGGC RHA1_ro04933 5206858 - 5204711 - | membrane efflux protein TERM 1807 5207014 - 5206977 - R 100 -27.1 -2.91582 | CACGGCATCGACAGA CCGCGGCCCCGCTCC GACATCAG GGAGCGGGGCCGCGG TACGTCATGGTGCTC RHA1_ro04934 5207942 - 5207031 - | hydroxylase rhtB 5208088 - 5208735 + | homoserine/homoserine lactone efflux protein RHA1_ro04936 5208816 - 5209859 + | Zn-binding dehydrogenase RHA1_ro04937 5209923 - 5210348 + | hypothetical protein RHA1_ro04938 5211393 - 5210356 - | AraC family transcriptional regulator TERM 1808 5210452 - 5210505 + g 72 -13.7 -3.14344 | gap 1, opp_overlap 5210434 GAGCCGCGCCGACAG GTCCTCCACGGTCTCGCCG-CGCCGG AGC CCGGCGACGGCGGCGTCCCGGAGCAC TTCCTCCCGCAGCTG RHA1_ro04939 5212616 - 5211390 - | aminotransferase RHA1_ro04940 5212686 - 5213297 + | hypothetical protein RHA1_ro04941 5214192 - 5213272 - | RNA polymerase sigma factor SigJ RHA1_ro04942 5214474 - 5215544 + | sulfonate ABC transporter substrate-binding component RHA1_ro04943 5215583 - 5216671 + | ABC sulfonate transporter, substrate binding component RHA1_ro04944 5216668 - 5217504 + | ABC transporter, ATP-binding component RHA1_ro04945 5217497 - 5218372 + | ABC transporter, permease component RHA1_ro04946 5218398 - 5219741 + | nitrilotriacetate monooxygenase component A RHA1_ro04947 5219831 - 5220964 + | major facilitator transporter RHA1_ro04948 5220978 - 5221967 + | hypothetical protein RHA1_ro04949 5222004 - 5222564 + | acetyltransferase RHA1_ro04950 5223240 - 5222572 - | hypothetical protein RHA1_ro04951 5225032 - 5223278 - | DNA repair helicase RHA1_ro04952 5225132 - 5225875 + | hypothetical protein RHA1_ro04953 5226260 - 5227234 + | ROK family glucokinase RHA1_ro04954 5227525 - 5228592 + | ABC transporter substrate-binding protein RHA1_ro04955 5228589 - 5229446 + | ABC transporter, permease component RHA1_ro04956 5229422 - 5230156 + | ABC transporter, ATP-binding component TERM 1809 5231333 - 5231323 - g 83 -8.2 -4.57837 | ATACTGGTTCAAAAA CGGC GCC GCCG ACGGATTCAACATCA RHA1_ro04957 5230169 - 5231530 + | nitrilotriacetate monooxygenase TERM 1810 5235308 - 5235351 + G 95 -15.2 -4.22375 | gap 1, opp_overlap 5235308 5235307, overlap 5235310 5235311 5235313 GGGGCTGTTTCAAAT TTCCGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTGATG TTTCTTGGATAATGT TERM 1811 5235310 - 5235349 + G 100 -20 -3.70709 | gap 1, opp_overlap 5235308 5235307, overlap 5235308 5235311 5235313 GGCTGTTTCAAATTT CCGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTGA TGTTTCTTGGATAAT TERM 1812 5235311 - 5235348 + G 95 -23.5 -2.81702 | gap 1, opp_overlap 5235308 5235307, overlap 5235310 5235308 5235313 GCTGTTTCAAATTTC CGGGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACCTG ATGTTTCTTGGATAA TERM 1813 5235313 - 5235346 + G 89 -22.5 -2.94962 | gap 1, opp_overlap 5235308 5235307, overlap 5235311 5235310 5235308 TGTTTCAAATTTCCG GGTCGGGGTGTCCGCG TGC CGCGG-CGCCCCGACC TGATGTTTCTTGGAT RHA1_ro04958 5231527 - 5235363 + | bifunctional ABC multidrug transporter TERM 1814 5236376 - 5236328 - g 76 -13.9 -3.53091 | gap 3, overlap 5236331 5236371 5236374 ACCGCCCTCCGCAAA CAG-GGTG-AGCG-CGCCGCCGCC GCCG GGCAGCGGCGCCGCAACACCACCG ACCCCGACTCGCGGT TERM 1815 5236372 - 5236331 - g 73 -16.6 -2.60496 | gap 2, overlap 5236328 5236371 GCCCTCCGCAAACAG GGTG-AGCG-CGCCGCCGCC GCCG GGCAGCGGCGCCGCAACACC ACCGACCCCGACTCG RHA1_ro04959 5235392 - 5236996 + | hypothetical protein RHA1_ro04960 5238106 - 5237123 - | 85 complex protein RHA1_ro04961 5240571 - 5238253 - | hypothetical protein TERM 1816 5240867 - 5240834 - R 100 -23.3 -3.54951 | gap 1, opp_overlap 5240834 5240837 5240866, overlap 5240837 GACCCGACGACACAA GAGGGGCCCTGCACCG GAT CGGTGCAGGG-CCCTC TTCTGTGAGTCGCGG TERM 1817 5240834 - 5240867 + r 100 -23.3 -3.51924 | gap 1, opp_overlap 5240834 5240837, overlap 5240837 5240866 GACCCGACGACACAA GAGGGGCCCTGCACCG GAT CGGTGCAGGG-CCCTC TTCTGTGAGTCGCGG TERM 1818 5240837 - 5240865 + r 100 -26.1 -3.33525 | opp_overlap 5240834 5240837, overlap 5240834 CCGACGACACAAGAG GGGCCCTGCACCG GAT CGGTGCAGGGCCC TCTTCTGTGAGTCGC TERM 1819 5240865 - 5240837 - R 100 -26.1 -2.6062 | opp_overlap 5240837 5240834, overlap 5240834 CCGACGACACAAGAG GGGCCCTGCACCG GAT CGGTGCAGGGCCC TCTTCTGTGAGTCGC RHA1_ro04962 5241468 - 5240887 - | resuscitation-promoting factor RHA1_ro04963 5242302 - 5241925 - | hypothetical protein TERM 1820 5242639 - 5242671 + H 85 -12 -4.18197 | gap 2, overlap 5242641 GGTAGACTGTGGGCA CTGCGCGTCCCGCACC AGA GGTG-GGG-CGCGCTG TTTTGCATACCAAGT TERM 1821 5242641 - 5242669 + H 84 -13.2 -3.69216 | gap 2, overlap 5242639 TAGACTGTGGGCACT GCGCGTCCCGCACC AGA GGTG-GGG-CGCGC TGTTTTGCATACCAA RHA1_ro04964 5242726 - 5243136 + | cold shock protein TERM 1822 5243149 - 5243187 + T 100 -24.1 -2.96216 | gap 1, opp_overlap 5243149 5243155, overlap 5243155 TGATTCGACGGACAA CGAA-AAGGCCCCTGCGC TCCG GCGCAGGGGCCTTCTTCG TGTGTCGTGCTAGGC TERM 1823 5243187 - 5243149 - T 100 -24.1 -3.36327 | gap 1, opp_overlap 5243149 5243155, overlap 5243155 TGATTCGACGGACAA CGAA-AAGGCCCCTGCGC TCCG GCGCAGGGGCCTTCTTCG TGTGTCGTGCTAGGC TERM 1824 5243180 - 5243155 - T 100 -21.9 -4.50058 | opp_overlap 5243155 5243149, overlap 5243149 GACGGACAACGAAAA GGCCCCTGCGC TCCG GCGCAGGGGCC TTCTTCGTGTGTCGT TERM 1825 5243155 - 5243180 + T 100 -21.9 -3.80419 | opp_overlap 5243149 5243155, overlap 5243149 GACGGACAACGAAAA GGCCCCTGCGC TCCG GCGCAGGGGCC TTCTTCGTGTGTCGT RHA1_ro04965 5243682 - 5243197 - | hypothetical protein RHA1_ro04966 5245359 - 5243689 - | hypothetical protein RHA1_ro04967 5246225 - 5245431 - | hypothetical protein RHA1_ro04968 5246264 - 5247109 + | hypothetical protein TERM 1826 5247280 - 5247258 - f 71 -12.6 -3.29144 | CGAGCTGGCGCAGAA CGCGGCCGAC GCC GCCGCCCGCG CCGAAGTGCCCGGCG RHA1_ro04969 5247286 - 5249850 + | hypothetical protein RHA1_ro04970 5249840 - 5250394 + | hypothetical protein RHA1_ro04971 5250691 - 5250443 - | hypothetical protein RHA1_ro04972 5250768 - 5252222 + | hypothetical protein RHA1_ro04973 5252256 - 5252687 + | MarR family transcriptional regulator TERM 1827 5253224 - 5253265 + G 70 -15.1 -2.72344 | gap 1 TACCTCATCGCGTTT CTGCT-CGGCTGCGCGTCGG CGA TCGACGCGCCGGCGCGGCAG TCGTTCACGATCGAG RHA1_ro04974 5252813 - 5254225 + | multidrug ABC transporter RHA1_ro04975 5255096 - 5254242 - | carbon monoxide dehydrogenase medium subunit RHA1_ro04976 5257468 - 5255093 - | carbon monoxide dehydrogenase large subunit RHA1_ro04977 5257998 - 5257465 - | carbon monoxide dehydrogenase small subunit (ferredoxin) RHA1_ro04978 5259219 - 5258095 - | hypothetical protein RHA1_ro04979 5260109 - 5259216 - | MoxR family ATPase RHA1_ro04980 5261064 - 5260171 - | short-chain dehydrogenase RHA1_ro04981 5261051 - 5261887 + | RNA methyltransferase RHA1_ro04982 5261890 - 5262180 + | hypothetical protein RHA1_ro04983 5262986 - 5262207 - | hypothetical protein TERM 1828 5262573 - 5262546 - G 74 -14.1 -3.28712 | GTCGCCCGCCCAGAA CGGCCTCTCCC ACACCA GGGGGAGGCCG AGGTCCTCGTGGATG RHA1_ro04984 5263922 - 5263065 - | hypothetical protein RHA1_ro04985 5264786 - 5264040 - | GntR family transcriptional regulator RHA1_ro04986 5264963 - 5265979 + | hypothetical protein RHA1_ro04987 5265981 - 5267528 + | ABC sugar transporter, ATP-binding component RHA1_ro04988 5267525 - 5268643 + | ABC transporter permease RHA1_ro04989 5268640 - 5269563 + | ABC sugar transporter, permease component RHA1_ro04990 5269589 - 5270569 + | ornithine cyclodeaminase RHA1_ro04991 5270566 - 5271051 + | guanine deaminase TERM 1829 5271060 - 5271102 + T 100 -31.5 -2.87344 | gap 1 GGACTGACCCTCGAA CG-CCGTCAGCCCCCGGCAC GGAG GTGCCGGGGGCTGACGGACG TGTGTGCCGGGACTC serC 5272237 - 5271116 - | phosphoserine aminotransferase TERM 1830 5272025 - 5271992 - G 70 -13.1 -3.32844 | gap 1 GGCCGCATCCCAGAA CGCGGTGGTGC-CGCC GTT GCCGAGCACCACCTCG TAGCCCTCGGGCAGG citA2 5273409 - 5272279 - | citrate synthase 2 pdxH 5273650 - 5274351 + | pyridoxamine 5'-phosphate oxidase RHA1_ro04995 5274394 - 5275680 + | major facilitator superfamily multidrug resistance protein RHA1_ro04996 5275733 - 5276695 + | aldose 1-epimerase RHA1_ro04997 5276805 - 5277080 + | hypothetical protein gltA 5277124 - 5278419 + | type II citrate synthase RHA1_ro04999 5278467 - 5278829 + | peptidylprolyl isomerase TERM 1831 5278840 - 5278883 + T 100 -19.6 -3.71527 | opp_overlap 5278847, overlap 5278841 5278847 AATAGTCTCCCCAGC ACCGAAAGCCCCGCATCACC TCAC GGTGACGCGGGGCTTTCCGC TTTCCGTGCTTCCGC TERM 1832 5278841 - 5278882 + T 100 -23.1 -2.82595 | opp_overlap 5278847, overlap 5278840 5278847 ATAGTCTCCCCAGCA CCGAAAGCCCCGCATCACC TCAC GGTGACGCGGGGCTTTCCG CTTTCCGTGCTTCCG TERM 1833 5278876 - 5278847 - T 100 -21.5 -3.68351 | opp_overlap 5278841 5278840 5278847 TCCCCAGCACCGAAA GCCCCGCATCACC TCAC GGTGACGCGGGGC TTTCCGCTTTCCGTG TERM 1834 5278847 - 5278876 + T 100 -19.3 -3.72363 | opp_overlap 5278847, overlap 5278841 5278840 TCCCCAGCACCGAAA GCCCCGCATCACC TCAC GGTGACGCGGGGC TTTCCGCTTTCCGTG RHA1_ro05000 5280224 - 5278860 - | sensor kinase, two-component system RHA1_ro05001 5280937 - 5280221 - | response regulator, two-component system RHA1_ro05002 5280984 - 5281937 + | hypothetical protein phr 5281967 - 5283307 + | deoxyribodipyrimidine photo-lyase TERM 1835 5283348 - 5283298 - T 100 -19.3 -3.26471 | gap 1, opp_overlap 5283298 5283299, overlap 5283299 5283339 CTACGGCGAGATCAA GGCCCTGTGAGTACTTGTTAACCG CGGG CGGTTAATAAGTACTCAC-GGGCG CTTTGCGCATGAGAA TERM 1836 5283298 - 5283348 + T 100 -21.5 -2.74144 | gap 1, opp_overlap 5283298 5283299 5283339, overlap 5283299 CTACGGCGAGATCAA GGCCCTGTGAGTACTTGTTAACCG CGGG CGGTTAATAAGTACTCAC-GGGCG CTTTGCGCATGAGAA TERM 1837 5283299 - 5283349 + T 100 -23.7 -3.57144 | gap 1, opp_overlap 5283299 5283298 5283339, overlap 5283298 TACGGCGAGATCAAG GC-CCTGTGAGTACTTGTTAACCG CGGG CGGTTAATAAGTACTCACGGGCGC TTTGCGCATGAGAAG TERM 1838 5283347 - 5283299 - T 100 -22.8 -2.55668 | gap 1, opp_overlap 5283298 5283299, overlap 5283298 5283339 TACGGCGAGATCAAG GCCCTGTGAGTACTTGTTAACCG CGGG CGGTTAATAAGTACTCAC-GGGC GCTTTGCGCATGAGA RHA1_ro05004 5284552 - 5283329 - | multidrug resistance protein RHA1_ro05005 5284649 - 5285224 + | TetR family transcriptional regulator RHA1_ro05006 5287163 - 5285229 - | propionate--CoA ligase TERM 1839 5287226 - 5287269 + r 78 -3.7 -4.72272 | gap 2, overlap 5287227 CGTCGGGTGTCCGGG ACACCGTCCGGACAGCCGGGG CGGA CGCCTGC-G-CTGGGCGGTGG TTTTTCGTCGCCCAG RHA1_ro05007 5288343 - 5287306 - | antigen 85-A precursor RHA1_ro05008 5288491 - 5289165 + | hypothetical protein RHA1_ro05009 5289189 - 5290691 + | hypothetical protein asn2 5290799 - 5292640 + | asparagine synthase (glutamine-hydrolyzing) RHA1_ro05011 5294240 - 5292627 - | acetyl-coenzyme A carboxylase carboxyl transferase alpha and beta subunits RHA1_ro05012 5294337 - 5295164 + | xanthine dehydrogenase subunit RHA1_ro05013 5295161 - 5297878 + | bifunctional: xanthine dehydrogenase/ 4-hydroxybenzoyl-CoA reductase RHA1_ro05014 5297896 - 5298879 + | hypothetical protein RHA1_ro05015 5298901 - 5299368 + | hypothetical protein RHA1_ro05016 5302558 - 5299379 - | hypothetical protein RHA1_ro05017 5303842 - 5302649 - | ABC transporter permease RHA1_ro05018 5304735 - 5303839 - | ABC transporter, ATP-binding component RHA1_ro05019 5305306 - 5304767 - | hypothetical protein RHA1_ro05020 5305700 - 5305299 - | transcriptional regulator RHA1_ro05021 5305783 - 5306109 + | ferredoxin RHA1_ro05022 5307765 - 5306110 - | ABC transporter, ATP-binding component RHA1_ro05023 5308359 - 5307766 - | hypothetical protein RHA1_ro05024 5308400 - 5309347 + | reductase RHA1_ro05025 5309908 - 5309351 - | hypothetical protein TERM 1840 5309378 - 5309426 + g 74 -15.5 -3.07816 | gap 3, opp_overlap 5309397 5309401 5309406, overlap 5309397 GTCCGCGAAGTCGAA GCCCGGGGTGACGACGCAACTGAC GAGA GTCGGTT-CGTCG-C-CCTCGGGC TTCGCTCGCTGCCAG TERM 1841 5310087 - 5310144 + H 100 -19.9 -2.94888 | gap 3, opp_overlap 5310118, overlap 5310088 5310089 CTCCATGTGGGTCGA CACCCGTCGGG-GGCGGGTGCGGG-CGC GAACA GCGGCCCGTACCCGCCACCCG-CTGGCG TGGTTTCACTCGGTT TERM 1842 5310088 - 5310146 + H 77 -14.7 -2.81118 | gap 4, opp_overlap 5310118, overlap 5310087 5310089 TCCATGTGGGTCGAC -AC-CCGTCGGG-GGCGGGTGCGGG-CGC GAACA GCGGCCCGTACCCGCCACCCGCTGGCGTG GTTTCACTCGGTTCT RHA1_ro05026 5310103 - 5310447 + | hypothetical protein RHA1_ro05027 5312512 - 5310407 - | membrane protein RHA1_ro05028 5315853 - 5312569 - | transcriptional regulator RHA1_ro05029 5315921 - 5316595 + | hypothetical protein RHA1_ro05030 5318061 - 5316568 - | phospholipase D alpha RHA1_ro05031 5318175 - 5319275 + | hypothetical protein RHA1_ro05032 5320377 - 5319268 - | oxidoreductase RHA1_ro05033 5320515 - 5321252 + | enoyl-CoA hydratase TERM 1843 5321494 - 5321458 - g 87 -17.3 -3.31144 | overlap 5321460 CCGGCAGTTCCACAA CACCGATCCGAGCAGCA CGA TGATGCCCGGATCGGAG ACCGGGATCGTCAAG TERM 1844 5321492 - 5321460 - g 86 -18.5 -3.22475 | overlap 5321458 GGCAGTTCCACAACA CCGATCCGAGCAGCA CGA TGATGCCCGGATCGG AGACCGGGATCGTCA RHA1_ro05034 5321315 - 5322412 + | hypothetical protein TERM 1845 5322837 - 5322793 - g 77 -10.7 -3.84825 | GTCAGCCAGACCAAA CCGGTGGTG-CGCCGCGACGG TGCCG CGGTCGCGATGGCACC-CCGG GAGGTCGTGCTCGAC RHA1_ro05035 5322463 - 5324913 + | P-type ATPase RHA1_ro05036 5325038 - 5325229 + | hypothetical protein TERM 1846 5325291 - 5325244 - f 93 -19.1 -2.87463 | opp_overlap 5325248 5325253 AACTCTTCTCACACA CTGACGCGCCTGGGCCCCGGT TCTCGG ACCGGGGCCCACACGCGTCTT CGGAGATGACCCGCA TERM 1847 5325248 - 5325287 + F 100 -21.4 -3.03124 | opp_overlap 5325244, overlap 5325253 CTTCTCACACACTGA CGCGCCTGGGCCCCGGTT CTCG GACCGGGGCCCACACGCG TCTTCGGAGATGACC RHA1_ro05037 5325353 - 5326954 + | Na+/H+ antiporter RHA1_ro05038 5326951 - 5328198 + | lipase RHA1_ro05039 5328195 - 5328560 + | hypothetical protein TERM 1848 5328543 - 5328586 + F 78 -13.8 -3.2396 | gap 1, opp_overlap 5328561, overlap 5328545 ACCCTGATCGCCCGA CTGGTCGACGGCGAATGACGG GAA CCGTCG-TCGCCGTCGTCGCG TTGCTCGTCCTCGTT TERM 1849 5328545 - 5328585 + F 74 -14.8 -2.53894 | opp_overlap 5328561, overlap 5328543 CCTGATCGCCCGACT G-GTCGACGGCGAATGACGG GAA CCGTCG-TCGCCGTCGTCGC GTTGCTCGTCCTCGT TERM 1850 5329144 - 5329091 - g 72 -13.7 -3.1355 | gap 1 TGCAGCCAGATCGAA CTCGCCGACCTCGACGCGTCCCGCGC CCG ACTCGAC-CGCGCCGAGGTCCGCGCG CTGCGCGCACAGATC RHA1_ro05040 5328557 - 5329765 + | sensor kinase, two-component system RHA1_ro05041 5329799 - 5330593 + | response regulator, two-component system RHA1_ro05042 5330590 - 5330949 + | hypothetical protein RHA1_ro05043 5330957 - 5332714 + | sodium:solute symporter, SSF RHA1_ro05044 5332899 - 5333261 + | hypothetical protein RHA1_ro05045 5333258 - 5334892 + | SSF family Na(+)/solute symporter RHA1_ro05046 5334964 - 5335395 + | hypothetical protein RHA1_ro05047 5336367 - 5335396 - | ABC amino acid transporter, periplasmic binding protein RHA1_ro05048 5336375 - 5338675 + | ATP-dependent DNA ligase RHA1_ro05050 5339487 - 5339221 - | hypothetical protein RHA1_ro05049 5338675 - 5339271 + | hypothetical protein RHA1_ro05051 5340075 - 5339509 - | hypothetical protein RHA1_ro05052 5340334 - 5341020 + | response regulator, two-component system RHA1_ro05053 5341044 - 5342021 + | sensor kinase, two-component system TERM 1851 5342053 - 5342037 - f 70 -13.7 -2.61912 | opp_overlap 5342038, overlap 5342036 CTACCGATCCACAAC CGGGACG CGA CGTCCCG CGATGACGCCTGCCT RHA1_ro05054 5342100 - 5343587 + | hypothetical protein RHA1_ro05055 5343878 - 5343690 - | hypothetical protein RHA1_ro05056 5344706 - 5343900 - | ABC transporter, ATP-binding component RHA1_ro05057 5345395 - 5344703 - | GntR family transcriptional regulator TERM 1852 5345401 - 5345444 + H 75 -14.6 -2.78384 | opp_overlap 5345413, overlap 5345413 GTCCGGCCATTCGGC GACGCTAGCACAGTCCTCAG ACGT CTGAGGACTGTGGTGGAGCC TATGGTGAACCGGAG RHA1_ro05058 5345490 - 5345951 + | hypothetical protein RHA1_ro05059 5347105 - 5345963 - | alpha-methylacyl-CoA racemase TERM 1853 5346650 - 5346707 + g 79 -15.4 -3.29471 | gap 1, opp_overlap 5346610 5346637, overlap 5346643 5346653 5346655 CAGGTTCAGCGGCGG CACCGGC-CGCTCGCCGGCGCGCCCGA TGGGT TCGAGCGCGCCCGCGAGCGCGATGTAG TTGATGTCGTGCCCG TERM 1854 5346653 - 5346704 + g 83 -20.1 -2.82519 | gap 1, opp_overlap 5346637, overlap 5346643 5346650 5346655 GTTCAGCGGCGGCAC CGGC-CGCTCGCCGGCGCGCCCGA TGGGT TCGAGCGCGCCCGCGAGCGCGATG TAGTTGATGTCGTGC TERM 1855 5346655 - 5346702 + g 82 -19.1 -2.95789 | gap 1, opp_overlap 5346637, overlap 5346643 5346653 5346650 TCAGCGGCGGCACCG GC-CGCTCGCCGGCGCGCCCGA TGGGT TCGAGCGCGCCCGCGAGCGCGA TGTAGTTGATGTCGT RHA1_ro05060 5349315 - 5347102 - | acyl-CoA dehydrogenase RHA1_ro05061 5350196 - 5349327 - | short chain dehydrogenase RHA1_ro05062 5351082 - 5350207 - | acyl dehydratase RHA1_ro05063 5351519 - 5351088 - | hypothetical protein RHA1_ro05064 5352751 - 5351567 - | lipid-transfer protein TERM 1856 5353329 - 5353374 + GH 72 -13.2 -3.15861 | CGCGACGGTCCTCGA CTCGGTGGCCGGCAATTCGG ATCTCG CCGAGTCGCTGGCCTTCGGG TTGGTGGGACTCGTG RHA1_ro05065 5352751 - 5353551 + | TetR family transcriptional regulator RHA1_ro05066 5354070 - 5355866 + | protein kinase RHA1_ro05067 5357129 - 5355867 - | manganese transport protein RHA1_ro05068 5357295 - 5358470 + | hydroxylase TERM 1857 5358512 - 5358473 - T 100 -27.2 -3.62096 | overlap 5358474 CGCCATGATCTGAAA GCGCCGGGAGGCCGAGGC GCGC GCCTCGGCCTCCCGGCAT CGGATCAGACTGCGG TERM 1858 5358511 - 5358474 - T 100 -30.7 -2.77043 | overlap 5358473 GCCATGATCTGAAAG CGCCGGGAGGCCGAGGC GCGC GCCTCGGCCTCCCGGCA TCGGATCAGACTGCG RHA1_ro05069 5359818 - 5358517 - | O-acetylhomoserine aminocarboxypropyltransferase RHA1_ro05070 5360386 - 5359859 - | hypothetical protein TERM 1859 5360451 - 5360428 - gR 95 -18.2 -3.71848 | overlap 5360440 GGTGTGCAGGAAGAA CCCGGCGTGA AACG TCACGCCGGG ACGGGTCCGATCAGG RHA1_ro05071 5360385 - 5360606 + | hypothetical protein RHA1_ro05072 5362026 - 5360617 - | GntR family transcriptional regulator RHA1_ro05073 5362034 - 5362534 + | hypothetical protein TERM 1860 5362572 - 5362601 + T 74 -11.3 -3.6849 | opp_overlap 5362571, overlap 5362592 TCGCGCCCACTGAAC GCCGCCCGCTCAG AAGT TTCCGCGGGCGGC TTGTTCGCGTTCGAT hpd3 5363786 - 5362581 - | 4-hydroxyphenylpyruvate dioxygenase RHA1_ro05075 5364004 - 5364651 + | IclR family transcriptional regulator RHA1_ro05076 5365238 - 5364657 - | carbonic anhydrase TERM 1861 5364908 - 5364942 + g 87 -17.8 -3.28924 | CCATGCCCACGAGGG CGCCGTCCCCCACGGT GCA GCCGTGCAGGACGGCG TTGTGCCCCACACTG RHA1_ro05077 5365414 - 5366631 + | CoA-transferase RHA1_ro05078 5366648 - 5367517 + | hydroxymethylglutaryl-CoA lyase RHA1_ro05079 5367546 - 5368913 + | dicarboxylate carrier protein TERM 1862 5369089 - 5369103 + F 73 -9.2 -3.86944 | opp_overlap 5369087, overlap 5369100 CATGCCACAAGATCC CGTCCG TTT CGGGCG TTTCGTCGTTCTCCG TERM 1863 5371314 - 5371272 - g 78 -13.3 -3.57144 | gap 1, opp_overlap 5371288 CGGTCCAGGTGCAAA CCCTCGGGCGCCATCCCCTC GTCG GCGCGG-CGGCGGCCGAGGG CCGAGTACGCGTCGC RHA1_ro05080 5369135 - 5371414 + | bifunctional sulfate transporter/ carbonate dehydratase RHA1_ro05081 5372312 - 5371416 - | hypothetical protein RHA1_ro05082 5373995 - 5372412 - | major facilitator superfamily multidrug resistance protein TERM 1864 5373753 - 5373716 - G 70 -15.5 -2.74523 | gap 1, overlap 5373713 GCAGTCCGAACATGA GGAGGC-CGCGGCGACCG TAC CGGTCGCCGAGCGCGCCC GCCGGAAGCAGGAGG RHA1_ro05083 5374086 - 5374757 + | TetR family transcriptional regulator RHA1_ro05084 5376017 - 5374962 - | adenylate cyclase RHA1_ro05085 5376182 - 5376895 + | translation initiation factor RHA1_ro05086 5377018 - 5377671 + | hypothetical protein ilvD1 5379434 - 5377740 - | dihydroxy-acid dehydratase TERM 1865 5378903 - 5378959 + g 81 -7.9 -4.56597 | gap 1, opp_overlap 5378901, overlap 5378904 5378904 GTCCGCGCGAACAGG CG-CCGACCGCCTCGAACGCGTCG ATGATGGTGA CGTCGCGTTCGGTGCCGTCGGACA TTTTTGCGACACCGG TERM 1866 5379876 - 5379895 + H 76 -13.6 -3.1552 | opp_overlap 5379879, overlap 5379874 CCGTCTTCCCGGCAA GCAGTGGG GGAA CCCACTGC TGTTCCTCGATGACG RHA1_ro05088 5380114 - 5381121 + | reductase RHA1_ro05089 5381167 - 5382444 + | MFS family transporter RHA1_ro05090 5382479 - 5384107 + | alkylglycerone-phosphate synthase RHA1_ro05091 5384119 - 5385018 + | diacylglycerol kinase RHA1_ro05092 5385457 - 5385023 - | ribosome-associated heat shock protein TERM 1867 5385119 - 5385177 + g 72 -15.3 -2.87051 | overlap 5385075 5385120 CGCGAGGACTTCGCG CGGTGGGGGCGGTGGTGTGTTGTCG-GTG TAG CACTCGACCGC-CACCACCGCGCCGACCC GTTTGGTGATCGGCC TERM 1868 5385323 - 5385333 + g 72 -8.2 -4.07568 | overlap 5385312 GCAGGCGGCCGCCGC CGCG GAC CGCG TTTTGAACAGCCGGG RHA1_ro05093 5386929 - 5385454 - | major facilitator superfamily multidrug transporter TERM 1869 5386129 - 5386096 - G 78 -13.1 -3.75738 | gap 1, opp_overlap 5386091 GACCAGGAGGAAGAA GACGC-CGCCGAGTGC GGC GTACACGGCGAGCGTC ACCAGGTTTGCCACC RHA1_ro05094 5386936 - 5387499 + | acetyltransferase RHA1_ro05095 5387553 - 5387972 + | hypothetical protein RHA1_ro05096 5389434 - 5387986 - | major facilitator superfamily multidrug resistance protein TERM 1870 5389500 - 5389464 - R 88 -13.9 -3.84185 | opp_overlap 5389463 5389459, overlap 5389465 CTCAGCGAAACACAA TTTGTGCACCATACACA GCA TATGCATGGTGCACAAC GTATGTATCGTGCAA TERM 1871 5389499 - 5389465 - R 87 -17.4 -2.90029 | opp_overlap 5389463 5389459, overlap 5389464 TCAGCGAAACACAAT TTGTGCACCATACACA GCA TATGCATGGTGCACAA CGTATGTATCGTGCA RHA1_ro05097 5390762 - 5389521 - | hypothetical protein TERM 1872 5390428 - 5390384 - G 70 -12.8 -3.29144 | gap 2 GGAGTCCGGTGAGAA CCCCCGCCG--CGAGTGCGGTC TGC GACCACGCCCGGTCGGCGGTGG CGCACAGTCCGACGA TERM 1873 5391675 - 5391635 - g 93 -17.6 -3.61517 | gap 1, overlap 5391643 ATTTGCGGTCAAGAA CG-GCGAAAGCCCGCCGCG ACGA CGCGACGGGCTTCCGGACG GGCGTGATCAGCTGT TERM 1874 5391666 - 5391643 - g 93 -17.4 -3.64049 | overlap 5391635 TCAAGAACGGCGAAA GCCCGCCGCG ACGA CGCGACGGGC TTCCGGACGGGCGTG RHA1_ro05098 5390853 - 5391692 + | 3-demethylubiquinone-9 3-O-methyltransferase hbd3 5392531 - 5391683 - | 3-hydroxybutyryl-CoA dehydrogenase RHA1_ro05100 5393766 - 5392606 - | acyl-CoA dehydrogenase RHA1_ro05101 5394638 - 5393940 - | TetR family transcriptional regulator TERM 1875 5394255 - 5394243 - GH 71 -9.1 -3.7282 | GTAGTCGACGAACAA CCGCT CGT AGCGG AAGCCGGTGACGATC TERM 1876 5397858 - 5397832 - gH 73 -13.6 -2.79796 | GGCGACCCCATCACA CTCGGCGGGCCG ATC CGGGGCGCCGAG GAAGTGGTGCTCGAC TERM 1877 5403269 - 5403223 - gH 82 -15.7 -3.05463 | gap 1 AGCGCCGTCACCGAA TCGCCGGACGCCCCGGTCGGCG ACGT CGACGTCCTCGGCG-CCGGCGA GCGGGCCGCACTGAC TERM 1878 5405710 - 5405671 - gH 76 -14.2 -3.05384 | gap 1 GCCCGTCGCACCGAA GCGGGGCGGTGGCAGTCGA TCC TGGACGGCC-CCGACCCGC TCCTCGGCTTCCGGC TERM 1879 5417368 - 5417409 + GH 90 -15.7 -3.61398 | ACCCGTGCCGTTGCC CGCCTGCGCGCCGCACTCG ACAC CGACATCGGCGTGCGGGCG TTGTTCGAGGCGCCC RHA1_ro05102 5394637 - 5421456 + | non-ribosomal peptide synthetase TERM 1880 5436286 - 5436301 + G 75 -8.2 -4.16842 | overlap 5436287 TCGGACTGGCGCGCG TCGGCG CCGA CGCCGG TTTCTTCGACATCGG RHA1_ro05103 5421588 - 5440424 + | non-ribosomal peptide synthetase RHA1_ro05104 5441126 - 5440431 - | DNA polymerase III subunit epsilon RHA1_ro05105 5441431 - 5442561 + | Mg2+/Co2+ transporter TERM 1881 5442561 - 5442602 + T 91 -20.1 -2.63631 | gap 1 CCGCGGCTGGTTGTG AGCG-AGGCCGGCTGCGGGC AGT GTCCGCAGCCGGCCGGCGCC TGCTGTCAGAGTTCG RHA1_ro05106 5443300 - 5442608 - | hypothetical protein ligC 5443353 - 5444396 + | ATP-dependent DNA ligase RHA1_ro05108 5444397 - 5445425 + | DNA ligase (ATP), N-terminal RHA1_ro05109 5445483 - 5445998 + | protein kinase TERM 1882 5446814 - 5446866 + G 93 -18.4 -3.40403 | gap 2, overlap 5446862 GAACGTGCTCTCGCT CGTCGGCCCCACCCGGGGCCTCGCCG AGG CGGCGATGCCCCA-G-GGGTTCGACG TTCTGGTCCGGAACC RHA1_ro05110 5446092 - 5447297 + | hypothetical protein RHA1_ro05111 5447315 - 5447536 + | hypothetical protein TERM 1883 5447840 - 5447824 - g 70 -12.3 -3.31461 | CATCTACGCGGAGAA CGACCTC GAC GAGGTCG ACGAGCCGTACTTGG RHA1_ro05112 5447630 - 5449309 + | ferredoxin--NADP(+) reductase, C-terminal RHA1_ro05113 5449449 - 5450399 + | lipoprotein RHA1_ro05114 5450444 - 5451430 + | ABC sugar transporter, permease component RHA1_ro05115 5451427 - 5452326 + | ABC sugar transporter, permease component RHA1_ro05116 5452345 - 5453652 + | ABC sugar transporter, solute-binding component RHA1_ro05117 5453670 - 5454734 + | ABC sugar transporter, ATP-binding component RHA1_ro05118 5456696 - 5454738 - | neprilysin RHA1_ro05119 5457732 - 5456764 - | protocatechuate dioxygenase RHA1_ro05120 5458588 - 5457824 - | hypothetical protein TERM 1884 5458019 - 5457989 - G 72 -13.3 -3.16668 | gap 1 GAACACGTGGAGGAA CGGCGCTTCGG-GA AGCG TCACCGATGCGCCG GGAAAGAGTCGCGCG RHA1_ro05121 5458932 - 5459111 + | hypothetical protein RHA1_ro05122 5459651 - 5459178 - | nodulation protein RHA1_ro05123 5460574 - 5459684 - | hypothetical protein RHA1_ro05124 5461482 - 5460571 - | reductase TERM 1885 5461902 - 5461953 + G 74 -15.8 -2.71144 | gap 2, opp_overlap 5461883 5461901 5461900 CGCCACCGAGGAAGG GCG-CCG-GCTCCGCGACGACGCG AAGGCG CGCGTCGACGCCGCGCACGGACGC TACTTCGAGGGCATC RHA1_ro05125 5461597 - 5462037 + | transcriptional regulator RHA1_ro05126 5462046 - 5462522 + | hypothetical protein RHA1_ro05127 5462529 - 5463437 + | LysR family transcriptional regulator RHA1_ro05128 5463610 - 5464935 + | shikimate MFS family protein RHA1_ro05129 5464932 - 5466701 + | hypothetical protein TERM 1886 5466774 - 5466799 + T 93 -14 -4.18018 | GCGGCATGCGTCGTA GCCGGTCTGC CTTTCA GCAGGCCGGC TTTTGCGTAGACCAG RHA1_ro05130 5468496 - 5466961 - | CoA synthetase RHA1_ro05131 5469879 - 5468551 - | major facilitator transporter RHA1_ro05132 5471174 - 5470008 - | long-chain-acyl-CoA dehydrogenase TERM 1887 5471179 - 5471231 + r 75 -13.6 -3.01684 | gap 2 ACCGAAGACATGCGA GGTTCCTTTCGA--CCGCACGCGTGC GGC GCACGCATGCATACTCGAAAGGAACC TATCTATCAATCATT RHA1_ro05133 5471447 - 5471292 - | hypothetical protein RHA1_ro05134 5471685 - 5471479 - | hypothetical protein TERM 1888 5471701 - 5471727 + r 73 -13.7 -2.82834 | TTCCGACCTCCCGTG TGGGCACCGGC GCCGA GCCGGTGCACA TGTCGTACTCGAATG RHA1_ro05135 5472279 - 5471743 - | hypothetical protein TERM 1889 5471985 - 5472004 + g 70 -8.6 -3.83568 | gap 1, overlap 5471979 5471989 CGTGCTTCAGGTCGT CACGG-GAC GTG GTCGCCGTG TTCTTGTGCGTCTGC RHA1_ro05136 5472392 - 5473297 + | TetR family transcriptional regulator TERM 1890 5473493 - 5473525 + G 71 -10.4 -3.72695 | overlap 5473488 CCCGGCGAGTGTGCC CGCGCGTCAGCCGC GCAGG GCGGCTTTCGCGAG TTTCCTCGGCAGCCT RHA1_ro05137 5473422 - 5474768 + | shikimate MFS family protein RHA1_ro05138 5474816 - 5475751 + | lipase RHA1_ro05139 5475778 - 5476407 + | hypothetical protein RHA1_ro05140 5476458 - 5477345 + | hydrolase trpF 5477934 - 5477347 - | phosphoribosylanthranilate isomerase RHA1_ro05142 5477924 - 5479306 + | esterase RHA1_ro05143 5479334 - 5480059 + | amino acid transporter RHA1_ro05144 5480137 - 5481372 + | acyl-CoA dehydrogenase RHA1_ro05145 5481442 - 5481819 + | hypothetical protein TERM 1891 5481884 - 5481841 - T 82 -16.1 -3.16881 | gap 3 CACCGAGGCGAGGAA CGGCTCGACGGCCGCGAGCACC TCG GG-GCTCGCGGCCACC--GCCG TCGAGTGGTCGAAAC RHA1_ro05146 5482626 - 5481823 - | hydrolase RHA1_ro05147 5483643 - 5482630 - | dehydrogenase RHA1_ro05148 5484170 - 5483640 - | MerR family transcriptional regulator RHA1_ro05149 5484158 - 5485636 + | permease for cytosine/purines, uracil, thiamine, allantoin RHA1_ro05150 5487130 - 5485601 - | transcriptional regulator TERM 1892 5486233 - 5486210 - G 77 -14.6 -3.21912 | gap 1, overlap 5486206 GGCCGAATCCAGCAA CCGGGT-CGCG ATG CGCGAACCCGG GGAATCGATGGCGAC RHA1_ro05151 5487235 - 5487714 + | cytosine deaminase RHA1_ro05152 5487711 - 5488667 + | oxygenase RHA1_ro05153 5490258 - 5488657 - | ABC transporter, ATP-binding component RHA1_ro05154 5490966 - 5490400 - | hypothetical protein TERM 1893 5491628 - 5491652 + G 74 -13.5 -3.2614 | opp_overlap 5491626, overlap 5491629 CAACCTCGAACCAGG TGCGGACACCG CGG CGGTGGCCGCG TTGCTCTCGCCCATC TERM 1894 5492831 - 5492857 + G 76 -2.1 -4.67982 | gap 1, opp_overlap 5492818, overlap 5492832 5492834 AACAGGTGACAGTTC GGCCCCTGCTGT GCAG GCTGC-GGGGCG TTTTCTTCGATAAAC RHA1_ro05155 5491062 - 5492870 + | penicillin-binding protein RHA1_ro05156 5492967 - 5494646 + | penicillin-binding protein RHA1_ro05157 5494764 - 5495501 + | hypothetical protein RHA1_ro05158 5496993 - 5495521 - | di/tripeptide permease RHA1_ro05159 5497430 - 5497050 - | hypothetical protein RHA1_ro05160 5497536 - 5498171 + | transcriptional regulator RHA1_ro05161 5498173 - 5499189 + | hypothetical protein TERM 1895 5499167 - 5499196 + T 100 -21.5 -2.79183 | CCCGTCGCACGACCG CGCCCCGTCGTCC GGGT GGATGACGGGGCG TGTGGTGCGGGTGGG RHA1_ro05162 5499767 - 5499213 - | hypothetical protein RHA1_ro05163 5500497 - 5499919 - | transcriptional regulator RHA1_ro05164 5500585 - 5501415 + | haloalkane dehalogenase leuA2 5503140 - 5501437 - | 2-isopropylmalate synthase TERM 1896 5501752 - 5501710 - G 70 -12.7 -3.27923 | overlap 5501703 5501706 GTCGAACACGACGAA CAGCCGGTCG-CCGTCCGGGC CGT GCTCG-ACGGACCACCGGCCG AGGCCGCCCCGGTAC TERM 1897 5502630 - 5502660 + g 71 -11.9 -3.61178 | CGCGTGCCACCTCCT GCGCTGCATCG AAGATCAAC CGGTGCAGCGC TTTCCGATCCCTGCC RHA1_ro05166 5503309 - 5503980 + | GntR family transcriptional regulator RHA1_ro05167 5505146 - 5504013 - | hypothetical protein RHA1_ro05168 5506632 - 5505175 - | adenylate cyclase RHA1_ro05169 5506821 - 5508086 + | hypothetical protein RHA1_ro05170 5508070 - 5509275 + | sensor kinase, two-component system RHA1_ro05171 5509268 - 5509936 + | response regulator, two-component system RHA1_ro05172 5509998 - 5510648 + | hypothetical protein RHA1_ro05173 5510715 - 5512577 + | hypothetical protein RHA1_ro05174 5515566 - 5512552 - | hypothetical protein TERM 1898 5513202 - 5513233 + g 70 -12.2 -3.28712 | gap 1, overlap 5513204 CCTCCGGTGCCCGAG CG-GGACGGCCGGTC GCC GACCGGCGGGCCTCG TTCTGCGCCCGGCGC TERM 1899 5514736 - 5514769 + g 72 -13.9 -3.21276 | gap 1, overlap 5514725 5514735 5514739 CATCACCGTTCGGCG GACGGCGGAGCGGGTG TCG TACCC-CTCCGCCATC TCTTCTCGGAACCGG TERM 1900 5515183 - 5515207 + g 70 -15.7 -2.79796 | GATCGCGTGCTGCTT GTCGGCGTCCG CGG CGGACGCCAAC TGTGGTGCGCTGCCG RHA1_ro05175 5516308 - 5515577 - | hypothetical protein trmB 5517081 - 5516305 - | tRNA (guanine-N(7))-methyltransferase TERM 1901 5517086 - 5517106 + H 75 -4 -4.68593 | GTTTCTGGCATACGG GTCTGAAG TTCAC CTTGAGAC TTTTTCGATAATCCG RHA1_ro05177 5517204 - 5518073 + | hypothetical protein RHA1_ro05178 5518070 - 5519518 + | hypothetical protein RHA1_ro05179 5519606 - 5519935 + | hypothetical protein TERM 1902 5520183 - 5520129 - f 90 -15.6 -3.63627 | opp_overlap 5520143 5520144, overlap 5520130 CGCCGAGAGGGGAAA TCGGACCGTCTGGCACTCGCTGCGAG GTT CTCTCAGCGGACGGCAGATGGTCCGG TTCCGGCTCACCCCA TERM 1903 5520182 - 5520130 - f 90 -19.1 -2.77962 | opp_overlap 5520143 5520144, overlap 5520129 GCCGAGAGGGGAAAT CGGACCGTCTGGCACTCGCTGCGAG GTT CTCTCAGCGGACGGCAGATGGTCCG GTTCCGGCTCACCCC RHA1_ro05180 5520209 - 5522038 + | phosphoenolpyruvate carboxykinase TERM 1904 5522050 - 5522101 + F 100 -27.8 -3.53091 | gap 1, opp_overlap 5522058, overlap 5522044 5522054 CTAGTCCCTCCCCGG TGACCGAATGTCACAGTGGTTCAGT CCG ACTGAACCACTGTGACATTCG-TCG TTTCAGGGGAGAAGT TERM 1905 5522054 - 5522098 + F 100 -31.9 -2.90496 | opp_overlap 5522058, overlap 5522044 5522050 TCCCTCCCCGGTGAC CGAATGTCACAGTGGTTCAGT CCG ACTGAACCACTGTGACATTCG TCGTTTCAGGGGAGA TERM 1906 5522094 - 5522058 - f 100 -25.5 -3.05384 | opp_overlap 5522044 5522054 5522050 TCCCCGGTGACCGAA TGTCACAGTGGTTCAGT CCG ACTGAACCACTGTGACA TTCGTCGTTTCAGGG RHA1_ro05181 5522190 - 5522690 + | hypothetical protein RHA1_ro05182 5524207 - 5522759 - | betaine-aldehyde dehydrogenase RHA1_ro05183 5525381 - 5524236 - | hypothetical protein RHA1_ro05184 5526547 - 5525378 - | phosphotransferase RHA1_ro05185 5527515 - 5526628 - | glucokinase RHA1_ro05186 5528414 - 5527518 - | methyltransferase RHA1_ro05188 5531329 - 5529608 - | hypothetical protein RHA1_ro05187 5528447 - 5529667 + | glycosyl transferase RHA1_ro05189 5531384 - 5532592 + | xylose transporter TERM 1907 5532667 - 5532631 - T 100 -26.8 -2.70932 | overlap 5532635 GCCCCCTGGGAACGA CGAAGGGGACCTCGGT GCACT ACCGAGGTCCCCTTCG CACCGGACTACGTGG TERM 1908 5532663 - 5532635 - T 100 -20.4 -3.27298 | overlap 5532631 CCTGGGAACGACGAA GGGGACCTCGGT GCACT ACCGAGGTCCCC TTCGCACCGGACTAC RHA1_ro05190 5533854 - 5532700 - | hypothetical protein RHA1_ro05192 5539455 - 5535145 - | hypothetical protein RHA1_ro05191 5534075 - 5535274 + | acyltransferase TERM 1909 5535937 - 5535919 - GT 80 -12.4 -3.72027 | ACTGTCGACGAAGAA CGCCGACC CCG GGTCGACG GTCACGTCCTGGGAG RHA1_ro05193 5539675 - 5539502 - | hypothetical protein RHA1_ro05194 5540894 - 5539803 - | isochorismate synthase TERM 1910 5540931 - 5540882 - G 73 -12.2 -3.48276 | gap 2, opp_overlap 5540889, overlap 5540886 CGGCGCGGGAGAGAA GGAAGCCGTCCATGGTCACCCGAC AGTA GTCGGGAG-CC-CGGACTACTTCC CGGGAGGCACGATCA RHA1_ro05195 5541391 - 5540924 - | universal stress protein RHA1_ro05196 5541510 - 5542685 + | beta-N-acetylhexosaminidase TERM 1911 5542680 - 5542712 + F 73 -9.1 -3.84406 | overlap 5542682 5542689 AAGGGCGTCCTCGCC TGCTAGTGCGCGGTC CGC GACCGGGTGCTGGTA TTCTTCTCGTCCGCC RHA1_ro05197 5542788 - 5543387 + | transcriptional regulator TERM 1912 5543434 - 5543378 - T 100 -28.4 -5.06414 | gap 2, opp_overlap 5543389, overlap 5543379 5543380 5543389 CGCGGGCAAGAAAAA GCCGGAGTGAACGGGACGCTCGTTCGAT CAG ATCGAACGAGCGTCCCGTTCG-TCCG-C GTCAGCGCAGTGTCG TERM 1913 5543434 - 5543379 - T 100 -28.6 -3.63367 | gap 1, opp_overlap 5543389, overlap 5543378 5543380 5543389 GCGGGCAAGAAAAAG CCGGAGTGAACGGGACGCTCGTTCGAT CAG ATCGAACGAGCGTCCCGTTCG-TCCGC GTCAGCGCAGTGTCG TERM 1914 5543433 - 5543380 - T 100 -32.1 -2.77538 | gap 1, opp_overlap 5543389, overlap 5543378 5543379 5543389 CGGGCAAGAAAAAGC CGGAGTGAACGGGACGCTCGTTCGAT CAG ATCGAACGAGCGTCCCGTTCG-TCCG CGTCAGCGCAGTGTC TERM 1915 5543425 - 5543389 - T 100 -29.7 -3.07575 | opp_overlap 5543389, overlap 5543380 5543378 5543379 AAAAGCCGGAGTGAA CGGGACGCTCGTTCGAT CAG ATCGAACGAGCGTCCCG TTCGTCCGCGTCAGC TERM 1916 5543389 - 5543425 + T 100 -29.7 -3.15544 | opp_overlap 5543389 5543380 5543378 5543379 AAAAGCCGGAGTGAA CGGGACGCTCGTTCGAT CAG ATCGAACGAGCGTCCCG TTCGTCCGCGTCAGC RHA1_ro05198 5544299 - 5543436 - | MaoC-like dehydratase fabG 5545645 - 5544299 - | 3-ketoacyl-(acyl-carrier-protein) reductase RHA1_ro05200 5545776 - 5547110 + | acetyl-CoA acetyltransferase TERM 1917 5547165 - 5547209 + TF 76 -9.8 -4.08394 | opp_overlap 5547148 5547187, overlap 5547167 5547168 CAGCGTGCACGCAGT GCGAGCGGGGATCCGGCAAC GAGGG GTGGCCGGATCCCCGAAATC TTTTCCGACAGGTGT TERM 1918 5547167 - 5547207 + TF 74 -11 -3.63922 | opp_overlap 5547187, overlap 5547165 5547168 GCGTGCACGCAGTGC GAGCGGGGATCCGGCAAC GAGGG GTGGCCGGATCCCCGAAA TCTTTTCCGACAGGT TERM 1919 5547168 - 5547206 + TF 75 -14.5 -2.78032 | opp_overlap 5547187, overlap 5547167 5547165 CGTGCACGCAGTGCG AGCGGGGATCCGGCAAC GAGGG GTGGCCGGATCCCCGAA ATCTTTTCCGACAGG TERM 1920 5547256 - 5547304 + TF 91 -17.3 -3.27525 | overlap 5547253 5547258 TGGCGATATCCCTGT CAGCCCCGTGTTGCTGCCTGACC CCC GACCTGGCAGCAGCGCGGGGCTC TTGCATTTCCGGCGG TERM 1921 5547258 - 5547302 + TF 100 -19.9 -3.20349 | overlap 5547256 5547253 GCGATATCCCTGTCA GCCCCGTGTTGCTGCCTGACC CCC GACCTGGCAGCAGCGCGGGGC TCTTGCATTTCCGGC TERM 1922 5548340 - 5548389 + GT 81 -15.8 -3.01712 | ACTGGCCTCCGCCGT CGACGGTCTCCGCACCGAGAC-CG ATCG CGCGTCCC-GTGAGGGGACCGTCG TGTTCGAGGGCCCGA RHA1_ro05202 5550759 - 5549602 - | hypothetical protein RHA1_ro05201 5547441 - 5549723 + | hypothetical protein TERM 1923 5550996 - 5550962 - TR 100 -31.5 -4.8048 | TCGGGACACGAAAAA GCCCGGCGGCCGGGG AGGTA CCCCGGCCGCCGGGC CGTGTGAAGCCGATC RHA1_ro05203 5552845 - 5551010 - | butyryl-CoA dehydrogenase RHA1_ro05204 5553551 - 5552928 - | 3-demethylubiquinone-9 3-methyltransferase RHA1_ro05205 5554688 - 5553573 - | hypothetical protein TERM 1924 5553963 - 5553980 + g 72 -14.1 -3.11272 | TGCGATGTGGACGAG CCCGCCG CGGC CGGCGGG TGTTCCGTACTGGTA RHA1_ro05206 5554974 - 5555993 + | 3-oxoacyl-(acyl carrier protein) synthase III RHA1_ro05207 5556028 - 5556651 + | hypothetical protein RHA1_ro05208 5557413 - 5556652 - | hypothetical protein RHA1_ro05209 5558648 - 5557488 - | phosphodiesterase RHA1_ro05210 5560098 - 5558707 - | cytochrome P450 CYP136 TERM 1925 5559436 - 5559387 - G 76 -7 -4.38154 | gap 1, overlap 5559389 ACAGCGCGGAGAAAA GGTCTTC-GCCGGCGCCCGCGCG ACGCG CGGGCAGGTAGCGGCGGAAGAAC TCCTCGAGTCGTGCG TERM 1926 5560232 - 5560212 - g 72 -13.9 -3.15579 | CGAAGTTCGGAGCAA CGCGCCGCG GAG CGCCGCGCG CGACTGCTCGAGGCG RHA1_ro05211 5560167 - 5560784 + | TetR family transcriptional regulator RHA1_ro05212 5560834 - 5561763 + | hydrolase RHA1_ro05213 5562570 - 5561797 - | hypothetical protein RHA1_ro05214 5562674 - 5563960 + | dehydrogenase RHA1_ro05215 5564262 - 5563966 - | LuxR family transcriptional regulator RHA1_ro05216 5565452 - 5564370 - | hypothetical protein RHA1_ro05217 5565583 - 5566617 + | antigenic 85 complex protein RHA1_ro05218 5566614 - 5567075 + | hypothetical protein RHA1_ro05219 5567120 - 5567437 + | hypothetical protein RHA1_ro05220 5567943 - 5568236 + | hypothetical protein RHA1_ro05221 5568357 - 5569217 + | hypothetical protein RHA1_ro05222 5569321 - 5569803 + | sigma factor, includes region 4 RHA1_ro05223 5570167 - 5569817 - | hypothetical protein RHA1_ro05224 5570772 - 5570209 - | hypothetical protein RHA1_ro05225 5571086 - 5570769 - | ArsR family transcriptional regulator RHA1_ro05226 5571803 - 5571120 - | TetR family transcriptional regulator TERM 1927 5572754 - 5572780 + G 82 -15.8 -3.25823 | CTGATGCGACCGACG TCCCGCGCGCTG TGG CGGCGCGGGGGA TTCCTGTGACAACCG RHA1_ro05227 5571863 - 5572789 + | hypothetical protein RHA1_ro05228 5572786 - 5574597 + | flavin binding monooxygenase RHA1_ro05229 5574649 - 5575791 + | xanthine dehydrogenase RHA1_ro05230 5575868 - 5576773 + | dehydrogenase RHA1_ro05231 5576776 - 5577360 + | carbon monoxide dehydrogenase RHA1_ro05232 5577357 - 5579759 + | carbon monoxide dehydrogenase RHA1_ro05233 5579789 - 5580682 + | hypothetical protein RHA1_ro05234 5580679 - 5581566 + | oxidoreductase RHA1_ro05235 5581579 - 5582220 + | hypothetical protein TERM 1928 5582882 - 5582840 - g 85 -17.6 -3.21099 | opp_overlap 5582877 GCGGGCCACCATGAA CCGGTCGAGGGCCACGGGCT GGG AGCCGGTGGTCCTCGCGCGG AGCCGTCCGCGGAAC RHA1_ro05236 5582217 - 5583434 + | hypothetical protein TERM 1929 5583809 - 5583782 - T 73 -14 -2.89564 | TCGGCATGCGAGACA CGCGCCTCGGCC GCAC GGTCGGGGCGCG TGTCGCGTCATGGGG RHA1_ro05237 5584820 - 5583849 - | DNA ligase (ATP), C-terminal TERM 1930 5584940 - 5584985 + r 71 -10.3 -3.68073 | gap 1, opp_overlap 5584921 5584959 CCACTGTCCGTGCGT CTGTGGGGCGG-GGTCAGAAGC CGG GCGCCCGGCCGCCGTTCCACAG TTGTTCGGTGACGTC RHA1_ro05238 5585387 - 5584953 - | hypothetical protein TERM 1931 5585844 - 5585825 - g 71 -10.6 -3.72576 | CGCTGCGCTACGAAA CGGGCGGC TATC GCCGCGCG CAAATGTGCACCGTC RHA1_ro05239 5585614 - 5586102 + | hypothetical protein RHA1_ro05240 5587423 - 5586314 - | ammonia monooxygenase TERM 1932 5587367 - 5587405 + g 78 -17.5 -2.71681 | gap 1 TGCGGCCCATCGGAG TCCGTGCCGACGCAGTGC GGCC GCGC-GCGTGGGCACGGA TCGTTCGGGGGATTG RHA1_ro05241 5587526 - 5588224 + | GntR family transcriptional regulator RHA1_ro05242 5588968 - 5588234 - | hypothetical protein RHA1_ro05243 5589432 - 5589076 - | hypothetical protein RHA1_ro05244 5590574 - 5589465 - | aldehyde dehydrogenase RHA1_ro05245 5590639 - 5591169 + | hypothetical protein RHA1_ro05246 5591326 - 5592306 + | AraC family transcriptional regulator RHA1_ro05247 5593571 - 5592264 - | acyl-CoA dehydrogenase RHA1_ro05248 5593887 - 5594912 + | LacI family transcription regulator RHA1_ro05249 5595111 - 5594926 - | hypothetical protein RHA1_ro05250 5595246 - 5595860 + | hypothetical protein RHA1_ro05251 5596250 - 5597428 + | oxidoreductase RHA1_ro05252 5597479 - 5598480 + | sugar phosphate isomerase/epimerase RHA1_ro05253 5599355 - 5598477 - | LysR family transcriptional regulator RHA1_ro05254 5599421 - 5600329 + | drug/metabolite transporter, permease component RHA1_ro05255 5600371 - 5600955 + | hypothetical protein RHA1_ro05256 5600952 - 5602073 + | synthetase RHA1_ro05257 5602070 - 5603197 + | acetyl-CoA acetyltransferase TERM 1933 5603417 - 5603400 - g 72 -4 -4.57569 | overlap 5603401 CGACGCCGCCAAAAA GGGCGC CCAGGT GCGCCG CAAGGTCGGGTTCGT RHA1_ro05258 5603194 - 5603874 + | ABC cobalt transporter, ATP-binding component RHA1_ro05259 5603871 - 5604473 + | hypothetical protein RHA1_ro05260 5604466 - 5605860 + | O-succinylbenzoate--CoA ligase RHA1_ro05261 5606185 - 5605865 - | hypothetical protein RHA1_ro05262 5607555 - 5606182 - | hypothetical protein RHA1_ro05263 5608933 - 5607623 - | magnesium citrate transporter CitM RHA1_ro05264 5609089 - 5610009 + | LysR family transcriptional regulator RHA1_ro05265 5610019 - 5610384 + | hypothetical protein RHA1_ro05266 5611425 - 5610400 - | LacI family transcription regulator RHA1_ro05267 5611568 - 5612623 + | oxidoreductase RHA1_ro05268 5612629 - 5613411 + | hydroxypyruvate isomerase RHA1_ro05269 5613475 - 5614731 + | transposase RHA1_ro05270 5615877 - 5614831 - | transposase TERM 1934 5615223 - 5615278 + g 77 -15.2 -3.14132 | opp_overlap 5615215 5615225 TGAAGAACCGCAGCA CATCGGCTCCGGCGTGGCCCTTGCGG AGGT CTGTGAGGACCTCCCCGGTGCCGACG TTCATCGCCGCGAAC TERM 1935 5616575 - 5616588 + G 86 -2.3 -5.14563 | overlap 5616553 CCTACGCTGGTCGTG TGCAG GTGA CGGCA TTTTTTCGTCGACGC TERM 1936 5616682 - 5616702 + G 77 -14.7 -3.14132 | overlap 5616689 GTCATCGCCGGTGCG GCTGTCGCG CAA CGCGACGGC TTCGTGCCGCCGGGG RHA1_ro05271 5616277 - 5617779 + | sensor kinase, two-component system RHA1_ro05272 5617776 - 5618456 + | response regulator, two-component system RHA1_ro05273 5619352 - 5618522 - | hypothetical protein RHA1_ro05274 5619371 - 5619805 + | Fe(3+) uptake regulator katG 5619842 - 5622070 + | catalase TERM 1937 5622158 - 5622100 - T 100 -20.3 -3.15544 | gap 1, opp_overlap 5622106, overlap 5622047 GCCGAGGCCGATCAA CCGCCATCTGGCCCGGCACCCG-CGAGT GGAT ACTCACCGGGTGTCGGGCCGGATTGTGG CGTATGTCAGAGGTG TERM 1938 5622106 - 5622152 + T 100 -21.7 -3.35934 | gap 1, opp_overlap 5622100 GCCGATCAACCGCCA TCTGGCCCGGCACCC-GCGAGT GGAT ACTCACCGGGTGTCGGGCCGGA TTGTGGCGTATGTCA RHA1_ro05276 5622491 - 5622165 - | hypothetical protein RHA1_ro05277 5622715 - 5623044 + | hypothetical protein RHA1_ro05278 5623305 - 5623072 - | hypothetical protein RHA1_ro05279 5624176 - 5623397 - | acetoin dehydrogenase RHA1_ro05280 5624504 - 5625412 + | hypothetical protein RHA1_ro05281 5626110 - 5625400 - | hypothetical protein TERM 1939 5626070 - 5626080 + g 70 -8.2 -3.92542 | CAATGGTTCAAGACC CGGC GTC GCCG TTCTTTACCACTCCA RHA1_ro05282 5626963 - 5626358 - | hypothetical protein RHA1_ro05283 5627411 - 5627067 - | hypothetical protein RHA1_ro05284 5628012 - 5627416 - | transcriptional regulator RHA1_ro05285 5628310 - 5629188 + | dihydrodipicolinate synthase/ N-acetylneuraminate lyase TERM 1940 5629217 - 5629255 + T 100 -25.4 -3.2964 | overlap 5629220 GGCCCCCGTCGGTAT CTATGATCGCCGGCCCCG ACA TGGGGCCGGCGATCATCG TTGTCGGCGGGGTTT TERM 1941 5629220 - 5629252 + T 100 -25.7 -2.82623 | overlap 5629217 CCCCGTCGGTATCTA TGATCGCCGGCCCCG ACA TGGGGCCGGCGATCA TCGTTGTCGGCGGGG RHA1_ro05286 5629495 - 5629250 - | hypothetical protein TERM 1942 5629468 - 5629515 + g 100 -20.6 -3.58343 | opp_overlap 5629474, overlap 5629469 TCCGCTCAGATGCGC GACGAACGGCGGGGGACGAAGT CGTC ACTTCGTCTCCCGCCGTGCGGA TTTCGGCCTAGTGGC TERM 1943 5629469 - 5629514 + g 95 -24.1 -2.74792 | opp_overlap 5629474, overlap 5629468 CCGCTCAGATGCGCG ACGAACGGCGGGGGACGAAGT CGTC ACTTCGTCTCCCGCCGTGCGG ATTTCGGCCTAGTGG TERM 1944 5629509 - 5629474 - G 100 -23.4 -3.15249 | opp_overlap 5629469 5629468 CAGATGCGCGACGAA CGGCGGGGGACGAAGT CGTC ACTTCGTCTCCCGCCG TGCGGATTTCGGCCT RHA1_ro05287 5631081 - 5629546 - | amino acid transporter TERM 1945 5631252 - 5631305 + r 75 -10.1 -3.91027 | opp_overlap 5631259 5631264, overlap 5631253 GCGTCCTGGGACTGC TATAGCACGAGACTGCACGCCCCGA AATA TGGGGGCGTGCAGTCGCGTTCGGCC TTTCGTGTGTGGTTG TERM 1946 5631253 - 5631304 + r 75 -13.6 -2.93893 | opp_overlap 5631259 5631264, overlap 5631252 CGTCCTGGGACTGCT ATAGCACGAGACTGCACGCCCCGA AATA TGGGGGCGTGCAGTCGCGTTCGGC CTTTCGTGTGTGGTT TERM 1947 5631298 - 5631259 - R 100 -22.2 -2.62983 | opp_overlap 5631253 5631252, overlap 5631264 GGGACTGCTATAGCA CGAGACTGCACGCCCCGA AATA TGGGGGCGTGCAGTCGCG TTCGGCCTTTCGTGT TERM 1948 5631293 - 5631264 - R 87 -17.9 -2.84634 | opp_overlap 5631253 5631252, overlap 5631259 TGCTATAGCACGAGA CTGCACGCCCCGA AATA TGGGGGCGTGCAG TCGCGTTCGGCCTTT RHA1_ro05288 5632368 - 5631322 - | proline racemase RHA1_ro05289 5633948 - 5632452 - | gamma-aminobutyraldehyde dehydrogenase RHA1_ro05290 5635521 - 5634040 - | betaine-aldehyde dehydrogenase RHA1_ro05291 5635993 - 5635568 - | hypothetical protein RHA1_ro05292 5637630 - 5635990 - | hypothetical protein TERM 1949 5637822 - 5637789 - R 100 -24.1 -3.86372 | GCAAGGTAAATACAA CTGAGGCGGATGATC GTGT GATCATCCGCCTCAG GGGGTAGGGAAGGGC RHA1_ro05293 5638595 - 5637843 - | transcriptional regulator RHA1_ro05294 5639546 - 5638761 - | reductase TERM 1950 5639150 - 5639177 + g 73 -12 -3.53012 | overlap 5639141 5639153 TGCTTCCGCCGCGGC CGTGTCGCAGCA TCGC TGCTGCGGCGTG TTTGCACACCCAGAA RHA1_ro05295 5639868 - 5639527 - | hypothetical protein RHA1_ro05296 5640129 - 5641238 + | cyanuric acid amidohydrolase TERM 1951 5641923 - 5641977 + G 70 -15.7 -2.75481 | gap 2, opp_overlap 5641921 ACACCGTACGACACC TCACGCACCGCCGGTGGAAGCAGCGGC GGC GCTGCTGCGGCC-CTGGCGTTGCG-GA TGGTTCCGGTTGCCG RHA1_ro05297 5641401 - 5642903 + | amidase RHA1_ro05298 5643255 - 5644667 + | hypothetical protein TERM 1952 5644978 - 5644957 - g 71 -2.1 -4.5442 | opp_overlap 5644961, overlap 5644960 5644961 TCGGGAACGACAAAA GCAGTGGCG GGCC CGCCATCCC TTACGGCAACCTCAC RHA1_ro05299 5644770 - 5645066 + | hypothetical protein RHA1_ro05300 5645309 - 5645061 - | hypothetical protein TERM 1953 5645200 - 5645214 + g 77 -11.4 -3.885 | opp_overlap 5645199 5645196 CCGCGGATATATGAC GTGGCG GCG CGCCAC TTCTTCTCTCCGGCT RHA1_ro05301 5645410 - 5645691 + | hypothetical protein RHA1_ro05302 5646215 - 5645688 - | hypothetical protein RHA1_ro05303 5646865 - 5646221 - | TetR family transcriptional regulator TERM 1954 5646996 - 5646963 - R 100 -21.7 -3.28712 | opp_overlap 5646951 5646953 5646965 GGTTCCTGGCGACAA CGGGCCGCCGGGCCT TTCC AGACCGGGCGGCCCG CTCGTACGCGACTGT RHA1_ro05304 5648570 - 5647014 - | sugar transport protein RHA1_ro05305 5648691 - 5649125 + | thioesterase TERM 1955 5650325 - 5650348 + G 74 -14.6 -3.02144 | gap 1, opp_overlap 5650310 TGGCGAAGCTGAACG CCGGCGACGCG TTC CGC-TCGCCGG TGTTCCAGCAGCTCG RHA1_ro05306 5649535 - 5650368 + | phytanoyl-CoA dioxygenase RHA1_ro05307 5650397 - 5650798 + | hypothetical protein RHA1_ro05308 5650808 - 5651791 + | hypothetical protein RHA1_ro05309 5652050 - 5653378 + | oxidoreductase RHA1_ro05310 5654530 - 5653562 - | esterase/ lipase TERM 1956 5654733 - 5654699 - g 82 -14.3 -3.70037 | gap 2, overlap 5654702 GAAGGATGACCGAAA CGACGATCGGCCACGCG ACA CGCGAGGCCGA-CG-CG GTCGACGGGGTCGAC TERM 1957 5654731 - 5654702 - g 72 -15.7 -2.95116 | gap 1, overlap 5654699 GGATGACCGAAACGA CGATCGGCCACGCG ACA CGCGAGGCCGA-CG CGGTCGACGGGGTCG RHA1_ro05311 5654689 - 5655354 + | hypothetical protein glnA4 5655347 - 5656702 + | glutamate--ammonia ligase RHA1_ro05313 5656699 - 5657472 + | hypothetical protein TERM 1958 5657481 - 5657519 + T 100 -23.3 -4.59773 | opp_overlap 5657484, overlap 5657484 GATCTGACCTGGAAG AAACTGTCGGCCGCCAC CAAAA GTGGCGGCCGACAGTTG TTTTTCGGCGTCAGC TERM 1959 5657484 - 5657516 + T 100 -25 -4.41633 | opp_overlap 5657484, overlap 5657481 CTGACCTGGAAGAAA CTGTCGGCCGCCAC CAAAA GTGGCGGCCGACAG TTGTTTTTCGGCGTC TERM 1960 5657516 - 5657484 - T 100 -25.7 -4.16842 | opp_overlap 5657484 5657481 CTGACCTGGAAGAAA CTGTCGGCCGCCACC AAA AGTGGCGGCCGACAG TTGTTTTTCGGCGTC RHA1_ro05314 5658212 - 5657541 - | TetR family transcriptional regulator RHA1_ro05315 5658459 - 5659358 + | hypothetical protein RHA1_ro05316 5659378 - 5660847 + | major facilitator transporter RHA1_ro05317 5661561 - 5660881 - | TetR family transcriptional regulator RHA1_ro05318 5661871 - 5661602 - | hypothetical protein RHA1_ro05319 5661870 - 5663492 + | CoA ligase RHA1_ro05320 5663482 - 5664282 + | enoyl-CoA hydratase RHA1_ro05321 5664279 - 5665391 + | alcohol dehydrogenase RHA1_ro05322 5665441 - 5666898 + | dehydrogenase TERM 1961 5667052 - 5667067 + G 83 -8.2 -4.59109 | overlap 5667053 GGATCGTCGACGTCC TCGGCG TCGG CGCCGG TTTTTCCGGCCTCTA RHA1_ro05323 5666979 - 5668673 + | monooxygenase TERM 1962 5668931 - 5668898 - g 81 -3 -5.00616 | overlap 5668904 CGGCTGGTGAAAAAA GGAAACCGCAGCCG CACGGT CGACTTCGAGCTCC GGGTGATCTGCCGCG RHA1_ro05324 5668670 - 5669044 + | acyl-CoA hydrolase RHA1_ro05325 5669050 - 5670348 + | oxidoreductase RHA1_ro05326 5670426 - 5671115 + | hypothetical protein RHA1_ro05327 5671149 - 5672534 + | oxidase TERM 1963 5674003 - 5674025 + G 70 -9 -3.9461 | opp_overlap 5673992 ACAAGGGCTACCAGG TGCCGCCCGC CGA GCTGGAGGCA TTGTTGTTGACGCAC RHA1_ro05328 5672628 - 5674286 + | CoA ligase RHA1_ro05329 5674363 - 5674701 + | hypothetical protein TERM 1964 5674894 - 5674869 - f 88 -15.5 -3.34962 | TGGGACACGGTAGAA CCCGCAACACC GCAG GGTGTTACGGG TAGCCGTGAAGTACA RHA1_ro05330 5675059 - 5678313 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro05331 5678662 - 5678348 - | hypothetical protein TERM 1965 5679240 - 5679183 - g 74 -16.1 -2.78816 | opp_overlap 5679224 TCATCGTCGACCACA GCACCATCGACCCGGACACCACCCGCC GGTT GGCGCAGGATGCCCAGGTCGCCGGGGC TTGCTTCCTCGACGC mmsB2 5678906 - 5679805 + | 3-hydroxyisobutyrate dehydrogenase RHA1_ro05333 5679802 - 5681262 + | aldehyde dehydrogenase RHA1_ro05334 5681436 - 5682869 + | amino acid transporter glyA3 5682946 - 5684307 + | glycine hydroxymethyltransferase TERM 1966 5685471 - 5685452 - g 73 -7 -4.11216 | CGCGCAGGTCGAAAA CGCCGCCG AGAT CGGCATCG AACACAACCTCGGCC RHA1_ro05336 5684307 - 5685716 + | L-serine ammonia-lyase RHA1_ro05337 5685816 - 5687030 + | hypothetical protein TERM 1967 5687562 - 5687587 + G 70 -14.7 -2.78384 | ACTCCGCGGCCGCAT CCTCGGCGCGT TCGA ACGCGCCGAGA TCTGCTCCGACCCCC TERM 1968 5687813 - 5687803 - g 75 -8.2 -4.15788 | overlap 5687790 5687804 AACCTCGGCAACAAA GCCG CCG CGGC ACTCGAGGAGCTCGG TERM 1969 5687906 - 5687852 - g 82 -16.3 -3.31322 | TCCAACTCGGCACAA TGGTCACCGACGTCGACGCCGACGG GCTCA CCGTCCGCGACAGCGACGGTGAACA CCACCGCATCGACGC RHA1_ro05338 5687116 - 5689269 + | dehydrogenase RHA1_ro05340 5690356 - 5689532 - | hypothetical protein RHA1_ro05341 5690443 - 5691111 + | transcriptional regulator dcd 5691121 - 5691690 + | deoxycytidine triphosphate deaminase TERM 1970 5692976 - 5693008 + G 70 -12.5 -3.29144 | overlap 5692977 CCGAGCCGCTGGTGA TCCGGGCGCGCACGG GCG CCGGGGGCGCTCGGC TTCTCGCGACGGTCG TERM 1971 5692977 - 5693007 + G 73 -16 -2.57344 | overlap 5692976 CGAGCCGCTGGTGAT CCGGGCGCGCACGG GCG CCGGGGGCGCTCGG CTTCTCGCGACGGTC RHA1_ro05343 5691814 - 5693214 + | hypothetical protein TERM 1972 5694921 - 5694885 - g 77 -15.7 -3.14683 | ACAGCGGCGCAGCAA GGCGCGGCTCGCGGTGG CGG CCACCGCGGACCTCGTC GAACTGACGCGACCG TERM 1973 5695255 - 5695229 - g 84 -15.8 -3.53012 | TCTTCGGCGCCGAAA CCGCTGTCCCCG AAG CGGAGGCAGCGG CAGCGTCGCCGGTGC RHA1_ro05344 5693227 - 5696184 + | alkaline protease RHA1_ro05345 5696268 - 5698208 + | hypothetical protein RHA1_ro05346 5698231 - 5699502 + | hypothetical protein RHA1_ro05347 5699619 - 5699987 + | hypothetical protein RHA1_ro05348 5700597 - 5699992 - | hypothetical protein RHA1_ro05349 5702332 - 5700647 - | ABC oligopeptide transporter, permease component RHA1_ro05350 5704218 - 5702362 - | ABC oligopeptide transporter, ATP-binding component RHA1_ro05351 5705141 - 5704215 - | ABC oligopeptide transporter, permease component RHA1_ro05352 5706115 - 5705138 - | ABC oligopeptide transporter, permease component RHA1_ro05353 5706253 - 5707026 + | hypothetical protein TERM 1974 5707060 - 5707030 - T 71 -13.3 -3.0263 | opp_overlap 5707028 AGGATCCGGTGAACA CGGGGAGGCCTTC TCGGC GAAGACCTCCCCC CGTTGTTCAGGCCTC RHA1_ro05354 5707192 - 5707067 - | hypothetical protein RHA1_ro05355 5707330 - 5707626 + | hypothetical protein RHA1_ro05356 5709020 - 5707629 - | hypothetical protein RHA1_ro05357 5709355 - 5710026 + | glutamine amidotransferase RHA1_ro05358 5710123 - 5710461 + | hypothetical protein RHA1_ro05359 5710501 - 5710833 + | DNA-binding protein TERM 1975 5712864 - 5712839 - g 79 -15.5 -3.34962 | TGGGACACGGTAGAA CCCGCAACACC GCAC GGTGTTACGGG TAGCCGTGAAGTACA RHA1_ro05360 5711126 - 5712931 + | transposase RHA1_ro05361 5713957 - 5712974 - | RNA polymerase factor sigma-70 RHA1_ro05362 5714519 - 5714019 - | hypothetical protein RHA1_ro05363 5714854 - 5714516 - | ArsR family transcriptional regulator RHA1_ro05364 5715290 - 5714910 - | hypothetical protein TERM 1976 5715916 - 5715891 - g 75 -4.6 -4.55295 | overlap 5715892 5715893 CTCGGCAGAAACAAA GCCACCCGCC GGCGTG GGCAGATGCC CGCGATCCGGGTCGC TERM 1977 5716123 - 5716098 - g 74 -12.5 -3.59262 | overlap 5716074 TGGGACACGGTCAAA CCCGCACCGCC GCAC GGTGATGCGGG TAGCCGTGACACACG RHA1_ro05365 5715354 - 5716190 + | DNA-binding protein RHA1_ro05366 5716485 - 5716183 - | hypothetical protein RHA1_ro05367 5716574 - 5717416 + | hypothetical protein RHA1_ro05368 5717904 - 5717449 - | glycosyl transferase TERM 1978 5717884 - 5717835 - G 100 -34.5 -3.1085 | TCAATTGAGCGAACA CGCCGCCGGCCCGCCCACGTA GAGGGGGA TACGTGGGCGGGCCGACGGCG TCGTGGAACTGAACG RHA1_ro05369 5719853 - 5717910 - | major facilitator superfamily multidrug transporter TERM 1979 5717946 - 5717972 + g 74 -13.6 -3.38072 | GCCGGTGTCCGTCAC GTGGCCGCCGCC GAG GACGCCGGCCAC TTGCTCTTCGCTCAG TERM 1980 5719347 - 5719315 - G 76 -7.6 -4.29508 | ACGCACACGAAGAAA CACCAGCGCCAGCC GAGGG GGCTGTCGACGATG ACGCCGCCGAGGATC RHA1_ro05370 5720392 - 5719850 - | MarR family transcriptional regulator RHA1_ro05371 5720477 - 5720887 + | ArsR family transcriptional regulator RHA1_ro05372 5720884 - 5721888 + | hypothetical protein RHA1_ro05373 5722729 - 5721896 - | thiosulfate sulfurtransferase RHA1_ro05374 5725249 - 5722910 - | glycosyl hydrolase RHA1_ro05375 5725977 - 5725252 - | hydrolase TERM 1981 5725980 - 5726009 + H 77 -12.1 -3.64703 | gap 1 CAGGCAGTCCCATCA CCTCC-CCGACGGT ACC GCCGTCGGCGGCGG TTTCGCTGAGGCGCG RHA1_ro05376 5726128 - 5726658 + | hypothetical protein RHA1_ro05377 5726769 - 5727290 + | hypothetical protein RHA1_ro05378 5727325 - 5728803 + | glycosyl transferase RHA1_ro05379 5729641 - 5728883 - | hypothetical protein RHA1_ro05380 5729820 - 5730188 + | hypothetical protein RHA1_ro05381 5730493 - 5730200 - | hypothetical protein RHA1_ro05382 5730605 - 5730847 + | hypothetical protein RHA1_ro05383 5730878 - 5731321 + | hypothetical protein TERM 1982 5731365 - 5731387 + T 89 -18.4 -3.09933 | opp_overlap 5731365 GCACGAGTCACAGGA GCGCCCGCCG ATT CGGTGGGCGC TTCGCTGAGTTCACC TERM 1983 5731387 - 5731365 - T 77 -16.2 -2.65264 | opp_overlap 5731365 GCACGAGTCACAGGA GCGCCCGCCG ATT CGGTGGGCGC TTCGCTGAGTTCACC RHA1_ro05384 5732592 - 5731402 - | tellerium resistance protein TERM 1984 5732718 - 5732667 - R 93 -18 -3.30124 | gap 1, overlap 5732668 CGCGACTTGGCAGAA CCGCCGCTGTCGCCGGGACGGCA CACGAGC TGCCGTCCCGGCGACCG-GGCTC ATCGTCGGTCGCCGA TERM 1985 5732717 - 5732668 - R 100 -21.5 -2.57931 | gap 1, overlap 5732667 GCGACTTGGCAGAAC CGCCGCTGTCGCCGGGACGGCA CACGAGC TGCCGTCCCGGCGACCG-GGCT CATCGTCGGTCGCCG RHA1_ro05385 5734210 - 5732717 - | gamma-aminobutyraldehyde dehydrogenase TERM 1986 5733178 - 5733122 - G 73 -13.1 -3.40403 | gap 3, opp_overlap 5733135, overlap 5733123 CGGCTCGTAGTAGAA GCCGGACGCGA-GATCGCCCCCGG-GGA CGGA TCCGCCGCGGACGATCTTCGC-CCCGGT GTCGCGGGCGCGATC TERM 1987 5733177 - 5733123 - G 73 -16.6 -2.64099 | gap 3, opp_overlap 5733135, overlap 5733122 GGCTCGTAGTAGAAG CCGGACGCGA-GATCGCCCCCGG-GGA CGGA TCCGCCGCGGACGATCTTCGC-CCCGG TGTCGCGGGCGCGAT RHA1_ro05386 5735592 - 5734207 - | hypothetical protein RHA1_ro05387 5736050 - 5735589 - | AsnC family transcriptional regulator RHA1_ro05388 5737671 - 5736136 - | amino acid transporter RHA1_ro05389 5738130 - 5737750 - | hypothetical protein RHA1_ro05390 5739551 - 5738127 - | hypothetical protein TERM 1988 5739604 - 5739582 - R 84 -13.5 -3.71527 | GTGGAATGACCGAAA GGTGACGTG TGAGG CACGTCACC GTGGCACCCATCCTG RHA1_ro05391 5741167 - 5739728 - | arabinan endo-1,5-alpha-L-arabinosidase RHA1_ro05392 5741722 - 5741291 - | hypothetical protein TERM 1989 5741690 - 5741640 - G 74 -12.5 -3.53811 | opp_overlap 5741640 GGCATCTTGCCGAAA CTCCGCCCCACC-CGCCCGCCGG TCACGCG CAGGAGGGCGCGGTGGG-CGGCG TTCATGAACTTGAGT TERM 1990 5741640 - 5741690 + g 72 -13.2 -3.1886 | opp_overlap 5741640 GGCATCTTGCCGAAA CTCCGCCCCACC-CGCCCGCCGGT CACGC GCAGGAGGGCGCGGTGGG-CGGCG TTCATGAACTTGAGT RHA1_ro05393 5742998 - 5742063 - | alcohol dehydrogenase TERM 1991 5742950 - 5742962 + g 81 -3.3 -4.8622 | CCAGTTCGCCGACTT CTTCG TGT CGCAG TTTTTCGTTGACCGC RHA1_ro05394 5743181 - 5743957 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1992 5743965 - 5744004 + T 100 -20.8 -3.14931 | gap 1, opp_overlap 5743965, overlap 5743967 TACGGTAGCGGAAAA GCTCTGTGCCCCCTGGTCC AGT GGACCAGGGGGCGC-GATC TTCGTCAGAGCTCGA TERM 1993 5744004 - 5743965 - T 100 -18.6 -4.14243 | gap 1, opp_overlap 5743965 5743967 TACGGTAGCGGAAAA GCTCTGTGCCCCCTGGTCC AGT GGACCAGGGGGCGC-GATC TTCGTCAGAGCTCGA TERM 1994 5743967 - 5744002 + T 100 -22 -3.1372 | gap 1, opp_overlap 5743965, overlap 5743965 CGGTAGCGGAAAAGC TCTGTGCCCCCTGGTCC AGT GGACCAGGGGGCGC-GA TCTTCGTCAGAGCTC RHA1_ro05395 5745346 - 5744009 - | integral membrane transport protein RHA1_ro05396 5745620 - 5747578 + | monooxygenase TERM 1995 5747591 - 5747623 + T 100 -19.9 -3.34344 | opp_overlap 5747592, overlap 5747592 TAGCGCACCGAGGAC ATTGCCCCGGAACCG AAT CGGTTCCGGGGCAGA TTCGTTCGAGGATGA TERM 1996 5747592 - 5747622 + T 100 -23.4 -2.60392 | opp_overlap 5747592, overlap 5747591 AGCGCACCGAGGACA TTGCCCCGGAACCG AAT CGGTTCCGGGGCAG ATTCGTTCGAGGATG TERM 1997 5747622 - 5747592 - T 100 -21.2 -2.80935 | opp_overlap 5747592 5747591 AGCGCACCGAGGACA TTGCCCCGGAACCG AAT CGGTTCCGGGGCAG ATTCGTTCGAGGATG RHA1_ro05397 5750824 - 5747642 - | carboxylase/ CoA carboxylase TERM 1998 5749042 - 5749061 + g 72 -9.3 -4.07885 | CGTGAAAGCTCCCTT CGTCGAC GAGATG GTCGACG TTTTCGCGCGCCGTG RHA1_ro05398 5751447 - 5750821 - | monooxygenase TERM 1999 5751205 - 5751226 + g 78 -12.3 -3.79906 | gap 1, opp_overlap 5751205 CACCGAGGTGAAGGA CCCGAC-GGC CAT GCCGGTCGGG TTGTTCTCGGCGTCC RHA1_ro05399 5751690 - 5752199 + | hypothetical protein RHA1_ro05400 5752327 - 5752809 + | hypothetical protein RHA1_ro05401 5752806 - 5753669 + | enoyl-CoA hydratase RHA1_ro05402 5753683 - 5754459 + | enoyl-CoA hydratase RHA1_ro05403 5754643 - 5755419 + | short chain dehydrogenase TERM 2000 5755438 - 5755479 + T 83 -17.4 -2.6063 | gap 1, overlap 5755436 5755436 TGCGGTGACAGGGCG CTGTGTGCTGGGTC-CGAC CTCGC GTCGCGGCCCAGCACACTG TCAGTTCTGCGTCCG RHA1_ro05404 5756157 - 5755480 - | TetR family transcriptional regulator TERM 2001 5756245 - 5756291 + r 84 -15.1 -3.36327 | overlap 5756247 5756248 CGAGGTGGGGACGGG TAAGGCCCCGGGAAGTCGCTG TTTGT CGACAACTTCCCGGGGCCCTG TTATCGGTGGGGTCA TERM 2002 5756247 - 5756289 + r 86 -15.5 -3.25102 | overlap 5756245 5756248 AGGTGGGGACGGGTA AGGCCCCGGGAAGTCGCTG TTTGT CGACAACTTCCCGGGGCCC TGTTATCGGTGGGGT TERM 2003 5756248 - 5756288 + r 89 -19 -2.5474 | overlap 5756247 5756245 GGTGGGGACGGGTAA GGCCCCGGGAAGTCGCTG TTTGT CGACAACTTCCCGGGGCC CTGTTATCGGTGGGG RHA1_ro05405 5757470 - 5756304 - | monooxygenase RHA1_ro05406 5757501 - 5757758 + | hypothetical protein RHA1_ro05407 5757884 - 5759542 + | ligase RHA1_ro05408 5759581 - 5760207 + | hypothetical protein TERM 2004 5760221 - 5760266 + T 100 -24.9 -3.61398 | opp_overlap 5760224, overlap 5760223 5760224 GACTTTTCTCTTTGC AAAGGATCGGCCCCGATACGA ACTT TCGTATCGGGGCCGATCCGTA TTGTTCAGCCGGCGA TERM 2005 5760223 - 5760264 + T 100 -27.5 -3.38812 | opp_overlap 5760224, overlap 5760221 5760224 CTTTTCTCTTTGCAA AGGATCGGCCCCGATACGA ACTT TCGTATCGGGGCCGATCCG TATTGTTCAGCCGGC TERM 2006 5760263 - 5760224 - T 100 -31 -3.53012 | opp_overlap 5760223 5760221 5760224 TTTTCTCTTTGCAAA GGATCGGCCCCGATACGA ACTT TCGTATCGGGGCCGATCC GTATTGTTCAGCCGG TERM 2007 5760224 - 5760263 + T 100 -31 -2.63073 | opp_overlap 5760224, overlap 5760223 5760221 TTTTCTCTTTGCAAA GGATCGGCCCCGATACGA ACTT TCGTATCGGGGCCGATCC GTATTGTTCAGCCGG RHA1_ro05409 5761716 - 5760271 - | riboflavin biosynthesis protein RHA1_ro05410 5764502 - 5761830 - | LuxR family transcriptional regulator RHA1_ro05411 5764734 - 5765135 + | hypothetical protein TERM 2008 5765641 - 5765659 + G 81 -7.4 -4.62069 | TCTGGAAGCGTGAAC CGTTCTTC TAC GAGGGACG TTTTTGGAATGCGGG RHA1_ro05412 5765196 - 5766311 + | monooxygenase RHA1_ro05413 5766338 - 5767087 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro05414 5769024 - 5767216 - | major facilitator superfamily multidrug transporter RHA1_ro05415 5769317 - 5770444 + | hypothetical protein TERM 2009 5770499 - 5770478 - f 90 -15.9 -3.47029 | opp_overlap 5770494, overlap 5770472 TCAGTGAAACAGGAA CCTCGGGAC GCGA GTCCCGAGG GGAATCTCGGTCGTT RHA1_ro05416 5770695 - 5771093 + | hypothetical protein TERM 2010 5771137 - 5771178 + T 100 -21.7 -2.82516 | GAACCGCACACCCGA TGCCGACTCCGCAACAGGA CGAT TCCTGTTGCCGAGCCGGCA TGTCGTCGTGCACCG RHA1_ro05417 5773854 - 5771209 - | LuxR family transcriptional regulator TERM 2011 5774232 - 5774207 - g 77 -14.7 -3.14132 | CTGGTGTTGGACGAA GTCGTGCCGGT GGGA ACCGGCACGGC GCGACTGATCGCCAC RHA1_ro05418 5774117 - 5774542 + | hypothetical protein RHA1_ro05419 5774706 - 5775377 + | hypothetical protein RHA1_ro05420 5775516 - 5776799 + | subtilisin RHA1_ro05421 5776815 - 5777057 + | hypothetical protein RHA1_ro05422 5777411 - 5778088 + | serine protease precursor TERM 2012 5778107 - 5778127 + T 78 -8.1 -4.42974 | overlap 5778102 CGGGGCCCCACCCCA CCACCCACC GGA GGGGGGCGG TTTGTTCTCTCTAGG TERM 2013 5778370 - 5778405 + T 100 -19 -4.05714 | opp_overlap 5778364 CGCTACCAAGGTGCA CGATGACGCCCCATCC TTCC GGGTGGGGCGTCGCCG TTTCTAGTTGACGCT RHA1_ro05423 5778678 - 5778409 - | hypothetical protein RHA1_ro05424 5778847 - 5778701 - | hypothetical protein RHA1_ro05425 5778866 - 5779036 + | hypothetical protein TERM 2014 5779598 - 5779627 + F 100 -20.1 -4.36262 | opp_overlap 5779598 ATTACCGATCTGAAA CTGGGGCTCACAG AACG CTGTGGGCCCCAG TTTTGGTATCCGTGT TERM 2015 5779627 - 5779598 - f 93 -17.9 -3.61356 | opp_overlap 5779598 ATTACCGATCTGAAA CTGGGGCTCACAG AACG CTGTGGGCCCCAG TTTTGGTATCCGTGT TERM 2016 5779746 - 5779763 + G 72 -6.9 -4.30576 | overlap 5779722 5779747 GCGCTTGTCTTCCGT TGCCGTG GTTA CGCGGCG TTTTGGTCGTGAGGC RHA1_ro05426 5779649 - 5779948 + | hypothetical protein RHA1_ro05427 5780437 - 5780039 - | hypothetical protein TERM 2017 5780098 - 5780137 + g 74 -12.2 -3.59627 | gap 1, opp_overlap 5780082, overlap 5780089 CGATCGTCGTCGAGC GACGCACCGGGCTCTGG CGTCCGA TCAGAGCCCGGT-CGGC TTTCGCGGGTTTGCT RHA1_ro05428 5781091 - 5780480 - | nuclease RHA1_ro05429 5781448 - 5781110 - | hypothetical protein TERM 2018 5784827 - 5784871 + G 74 -15.6 -3.01712 | gap 1 TCGCGATGCAGATCG CCGCCCGCGCCAGAGCACTCG GACT CGGGTTCACCG-CGCGGGCGG TCTTCGAGCACAAGA TERM 2019 5793040 - 5792983 - g 72 -13.6 -3.15544 | gap 3 CCGGATTCGGATCAA GGGCCGACGC-AGGT-GATCGT-TCCCGC ATC GCAGGTGACGATCGACCTCACGCCGACCC CGGTCGCCGACGAGA TERM 2020 5796675 - 5796705 + G 74 -11.8 -3.77553 | ACTGCATCAGGATCT GGTCGACCTGGCAC ACC GTGACGGCTCGACC TTGTTCATGGTGTTG RHA1_ro05430 5781604 - 5797356 + | non-ribosomal peptide synthetase RHA1_ro05431 5797434 - 5798447 + | antigenic 85 complex protein RHA1_ro05432 5799074 - 5798784 - | hypothetical protein RHA1_ro05433 5799097 - 5799288 + | hypothetical protein TERM 2021 5799605 - 5799636 + F 75 -7.3 -4.28762 | gap 1, overlap 5799600 5799615 GGCGGTGTAACCCGG GGCGCGTT-CTTCG GGTGA CGAGGCAGCGTGCC TTTTCGTCGGATTCT TERM 2022 5800412 - 5800442 + G 71 -11.1 -3.60296 | GCTGTTGTTCCGCCT CGATCTGGCGAGG CTCTA CCTCGCCATAGCG TTTCCCGTCGGACTG RHA1_ro05434 5800065 - 5801531 + | undecaprenyl-phosphate galactose phosphotransferase RHA1_ro05435 5801715 - 5802794 + | mannose-1-phosphate guanylyltransferase manA1 5802798 - 5804105 + | mannose-6-phosphate isomerase galU1 5804181 - 5805083 + | UTP--glucose-1-phosphate uridylyltransferase RHA1_ro05438 5805477 - 5807000 + | undecaprenyl-phosphate galactose phosphotransferase RHA1_ro05439 5807184 - 5808299 + | hypothetical protein RHA1_ro05440 5808296 - 5808835 + | serine O-acetyltransferase RHA1_ro05441 5808832 - 5810058 + | hypothetical protein TERM 2023 5810038 - 5810064 + T 85 -16.7 -3.09933 | TCGCCGCCCCTTGTG GGTAGCTCACC GAGCG GGTGAGCTACC TTAAATCACTTCGCG RHA1_ro05442 5811218 - 5810070 - | glycosyltransferase RHA1_ro05443 5811991 - 5811215 - | N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase RHA1_ro05444 5812149 - 5813279 + | GDP-mannose 4,6-dehydratase RHA1_ro05445 5813276 - 5814244 + | GDP-L-fucose synthase TERM 2024 5814584 - 5814571 - g 81 -3.7 -4.83615 | overlap 5814572 5814573 TACCCCGCAGAAAAA GGGCG AGTT CGCCG CCGACCTGACCTATG RHA1_ro05446 5814296 - 5815621 + | UDP-glucose 6-dehydrogenase RHA1_ro05447 5815663 - 5816226 + | hypothetical protein TERM 2025 5816536 - 5816503 - g 80 -18.2 -2.83894 | gap 1 AGTACTACTACGAGA CCGACACTGCGGCGC CACTT GCGCCGCAG-GCCGG GCAACCGCACGACGG RHA1_ro05448 5816223 - 5816702 + | hypothetical protein RHA1_ro05449 5816703 - 5818076 + | hypothetical protein RHA1_ro05450 5818409 - 5818050 - | hypothetical protein RHA1_ro05451 5820274 - 5818415 - | hypothetical protein TERM 2026 5820149 - 5820132 - G 70 -3.3 -4.51799 | overlap 5820133 5820134 AGCAAAGCCACAAAA CCCCCCG TGAT CAGGGAA CGCTTGCGCTTATAG TERM 2027 5826418 - 5826394 - g 71 -10 -3.75153 | opp_overlap 5826388, overlap 5826405 CCTTTGCAACCGAAA TCGGGACCGA AGGCA TCGGTCTCGA CGACAGTTTCTTCGA TERM 2028 5829572 - 5829602 + G 75 -8.8 -4.16279 | CACCGTGGCGGCACT GACGTCCAGGCTGC TCC GCAGCCCGTGCGCC TTTTCGGCTGCTCTG TERM 2029 5829658 - 5829629 - g 90 -13.5 -3.99324 | gap 1 TCTGACTACCACAAA GGCGCACG-GGCGC GAA GCGCCTCTCGCGCC GGCGCAGGACCGCCT TERM 2030 5832502 - 5832517 + G 75 -6.8 -4.44046 | overlap 5832471 5832498 TCGGGATCCCCGACA TCGGCG CCGA CGCTGA TTTCTTTGCCCTGGG TERM 2031 5845088 - 5845056 - g 74 -16.3 -2.71011 | overlap 5845058 5845062 ATGGCCGTGCAACTA CACGAAGCTGGCCAC GAA GTGGCCACCCTCGCG ATGCTCGACACCCTG TERM 2032 5845086 - 5845058 - g 72 -15.3 -2.90075 | overlap 5845056 5845062 GGCCGTGCAACTACA CGAAGCTGGCCAC GAA GTGGCCACCCTCG CGATGCTCGACACCC RHA1_ro05452 5820432 - 5845466 + | non-ribosomal peptide synthetase RHA1_ro05453 5845588 - 5847288 + | protein-tyrosine kinase RHA1_ro05454 5847771 - 5847253 - | protein-tyrosine-phosphatase RHA1_ro05455 5847877 - 5849199 + | UDP-glucose 6-dehydrogenase RHA1_ro05456 5849317 - 5850282 + | triacylglycerol lipase RHA1_ro05457 5850437 - 5851816 + | chaperone protein RHA1_ro05458 5851876 - 5852100 + | hypothetical protein RHA1_ro05459 5853416 - 5852112 - | hypothetical protein RHA1_ro05460 5853855 - 5853598 - | hypothetical protein RHA1_ro05461 5853912 - 5854430 + | hypothetical protein TERM 2033 5854931 - 5854953 + G 77 -11.3 -3.88291 | gap 1 CCGTGCGCACCGCGA CACCCGGACG CGAG CG-CCGGGTG TTTCTCGCGGTCATC RHA1_ro05462 5854435 - 5855616 + | hypothetical protein RHA1_ro05463 5856047 - 5855607 - | hypothetical protein RHA1_ro05464 5856763 - 5856044 - | hypothetical protein TERM 2034 5856784 - 5856807 + r 71 -13.2 -3.01416 | opp_overlap 5856783 5856781 5856788, overlap 5856788 TCCCCCAGGAGACAC GCAAGCGACG CGCG TGTCGCTTGC TGTGTCTCGATCCTA RHA1_ro05465 5858082 - 5856820 - | aminotransferase AlaT RHA1_ro05466 5858233 - 5859633 + | hypothetical protein TERM 2035 5860121 - 5860175 + G 74 -11.3 -3.73224 | opp_overlap 5860140, overlap 5860122 GCGTGATTCCGCTGG ACGG-GTCGGCGGCGAACGATCCACAC CGG GTGCGGTCCGT-CGTCGCCGGCTCCGA TTTCCTGGCCAATCC TERM 2036 5860122 - 5860174 + G 72 -14.8 -2.8372 | opp_overlap 5860140, overlap 5860121 CGTGATTCCGCTGGA CGG-GTCGGCGGCGAACGATCCACAC CGG GTGCGGTCCGT-CGTCGCCGGCTCCG ATTTCCTGGCCAATC RHA1_ro05467 5859658 - 5861607 + | hypothetical protein TERM 2037 5862458 - 5862439 - g 71 -11.4 -3.61715 | GAGGTCGTCGAAGAA GAGGCGCG CTAC CGCACCTC GAGCCGGTTCGAGAC TERM 2038 5870955 - 5870985 + G 71 -2.4 -4.60487 | overlap 5870956 5870957 GACTGACATCTTCGA TGCTTCGACGGTGC GCG GCATCGCAGAAGGG TTTTTGCGGGTGCTC TERM 2039 5871857 - 5871904 + G 93 -19.3 -3.40403 | opp_overlap 5871845 TCATCACGGCCCCGG CGGCCCTGGGGATCGTCGA-CCC GGGC GGGCTCGACGAACTCCAG-GCCG TTGTCGTCGGCGGAG TERM 2040 5879249 - 5879265 + G 72 -3.6 -4.55287 | overlap 5879251 TCCGAGCGGACGGTG AAGCGG GAGCG CCGCTG TTTTGTATCCATCCC RHA1_ro05468 5861815 - 5880006 + | non-ribosomal peptide synthetase RHA1_ro05469 5881555 - 5880107 - | hypothetical protein RHA1_ro05470 5883297 - 5881552 - | hypothetical protein RHA1_ro05471 5884579 - 5883386 - | hypothetical protein TERM 2041 5884220 - 5884271 + g 81 -12.2 -3.84406 | gap 1, opp_overlap 5884169, overlap 5884243 CTCGTGGCCCGCTCC CGCGGTCGCCGCATTGTGACCGTCG GTG CGGCCGTCGTGGT-CGGCGGCAGCG TTGTTCTGGTGGGCC TERM 2042 5886049 - 5886085 + G 79 -15.2 -3.35679 | gap 1 AGGTCGGGAATCCGG GGATGGGTGGTGGCGGC CAGC GCCGCCGC-GCTCATCC TTCTCGGTGCAGGCG RHA1_ro05472 5884828 - 5886282 + | hypothetical protein RHA1_ro05473 5886685 - 5886284 - | hypothetical protein TERM 2043 5886671 - 5886708 + g 100 -32.9 -3.11634 | opp_overlap 5886671, overlap 5886673 GGCCGTCACGGAAAA CAGCAGCGCCCCCACCG ATCA CGGTGGGGGCGCTGCTG TTCACTGCTGTCGGC TERM 2044 5886708 - 5886671 - G 100 -32.9 -4.18018 | opp_overlap 5886671 5886673 GGCCGTCACGGAAAA CAGCAGCGCCCCCACCG ATCA CGGTGGGGGCGCTGCTG TTCACTGCTGTCGGC TERM 2045 5886673 - 5886706 + g 100 -29.7 -3.11768 | opp_overlap 5886671, overlap 5886671 CCGTCACGGAAAACA GCAGCGCCCCCACCG ATCA CGGTGGGGGCGCTGC TGTTCACTGCTGTCG RHA1_ro05474 5889959 - 5886723 - | Fe-S reductase TERM 2046 5886951 - 5886969 + g 71 -11.6 -3.57144 | GGCCTTCGGTGCTGC GGCCTCGG GAG CCGCGGCC TTTCGGGCTCCGGGA TERM 2047 5888605 - 5888619 + g 73 -7.8 -4.16921 | overlap 5888615 TTGGAGTTCTGGCCC CAGGGG TTG CCCTTG TTTTCGAGGTTCTTG RHA1_ro05475 5890392 - 5889976 - | hypothetical protein TERM 2048 5890207 - 5890256 + g 81 -10.6 -4.2558 | CCTAACTTCGGCCGA CGGCCGCCGG-GTGCGGTCCGCGG CGCT CC-CGGAGAGGGCTCCGGCGGTCG TTTTCGTCACGAATC RHA1_ro05476 5890579 - 5891025 + | hypothetical protein RHA1_ro05477 5891318 - 5892004 + | hypothetical protein TERM 2049 5892028 - 5892055 + F 100 -24.2 -3.27298 | CGCGGTACTCAGACG CCGCCCGCCTCC CTTC GGAGGCGGGCGG TTCGTCGTTGCGCCC TERM 2050 5892419 - 5892373 - g 86 -18.6 -3.14132 | opp_overlap 5892387 5892388 CGCCTTCTCGATCAA CGCCGCGAACGACACCGTCGAC GTG GTCGACGACGGCGGCCGCGTCG TCGCGTCCATTCCCA RHA1_ro05478 5892176 - 5892916 + | hypothetical protein RHA1_ro05479 5892913 - 5893614 + | hypothetical protein RHA1_ro05480 5893876 - 5894085 + | hypothetical protein TERM 2051 5894099 - 5894138 + T 100 -29.4 -3.50572 | opp_overlap 5894103 GAGTGCACGACCGAC GACAGCGGCCCGCCTCCC GAGA GGGAAGCGGGCCGCTGTC TTCTGTGGAGTGCGT TERM 2052 5894134 - 5894103 - T 100 -25.2 -2.81464 | opp_overlap 5894099 GCACGACCGACGACA GCGGCCCGCCTCCC GAGA GGGAAGCGGGCCGC TGTCTTCTGTGGAGT RHA1_ro05481 5895511 - 5894153 - | protease TERM 2053 5895151 - 5895182 + g 70 -13 -3.29043 | gap 1 CGTCCTTGTCGGCAC CGTCGGCGAGCCCGA CGA TCGGGGT-GCCGGCG TTGTCGAGCCAGGTT TERM 2054 5895686 - 5895646 - R 100 -28.5 -3.06696 | overlap 5895625 5895624 CGGGGCCGGAATACA CCTGTGCCCGGTGTCCG AGCGGAG CGGACACCGGGCACAGG GTGGGGCGGTGGGGA RHA1_ro05482 5897022 - 5895703 - | protease RHA1_ro05483 5898295 - 5897135 - | hypothetical protein RHA1_ro05484 5900393 - 5898450 - | transcriptional regulator RHA1_ro05485 5902221 - 5900401 - | hypothetical protein RHA1_ro05486 5902430 - 5905933 + | hypothetical protein TERM 2055 5905981 - 5905939 - f 100 -26.3 -2.78816 | CGAGCCGTGATGAGA CGGCGGTTCCGGCATCCCC CAGAC GGGGTGGCCGGAACCGCCG TACGATGTAACGAAA TERM 2056 5906033 - 5905992 - f 82 -16 -3.09516 | gap 1, opp_overlap 5905998, overlap 5905997 5905998 CGCCGTACGATGTAA CGAAATCAGCCCCGGACGC GTTAT GCGTGCGGGGCTG-TTTCA CACAGTCGGGTGTCG TERM 2057 5906029 - 5905997 - f 91 -14.8 -3.94002 | opp_overlap 5905998, overlap 5905992 5905998 TACGATGTAACGAAA TCAGCCCCGGACGC GTTAT GCGTGCGGGGCTGT TTCACACAGTCGGGT TERM 2058 5905998 - 5906028 + F 100 -19 -3.54424 | opp_overlap 5905997 5905992 5905998 ACGATGTAACGAAAT CAGCCCCGGACGCG TTA TGCGTGCGGGGCTG TTTCACACAGTCGGG TERM 2059 5906028 - 5905998 - f 89 -18.3 -2.95919 | opp_overlap 5905998, overlap 5905997 5905992 ACGATGTAACGAAAT CAGCCCCGGACGC GTTAT GCGTGCGGGGCTG TTTCACACAGTCGGG RHA1_ro05487 5906106 - 5907950 + | hypothetical protein RHA1_ro05488 5907947 - 5909443 + | hypothetical protein RHA1_ro05489 5910768 - 5909449 - | hypothetical protein galK 5912285 - 5911095 - | galactokinase TERM 2060 5911479 - 5911536 + g 82 -16.2 -3.37796 | gap 1, opp_overlap 5911469 ACTCAGCGCCGCGAC GGCC-GTGTCGGTGTCGGCGACGTCGC GCAGG GTGGCGACGCCGAGGTCGGCGCAGGCC TTCTCGATGGTGGCC TERM 2061 5911557 - 5911593 + g 74 -13.6 -3.2794 | overlap 5911558 GATGGTGGCCCGCCG GGTGCCGTACCGGCCG TCGAC CAGCCGGTGCGGCGCG TTGGTGTCGATGACC TERM 2062 5911558 - 5911592 + g 77 -17.1 -2.5655 | overlap 5911557 ATGGTGGCCCGCCGG GTGCCGTACCGGCCG TCGAC CAGCCGGTGCGGCGC GTTGGTGTCGATGAC TERM 2063 5912253 - 5912223 - G 74 -12.5 -3.61398 | CGTGCTGCGGAACAA CGCCTCCGCGG GGTCCGCGA CCGCGGCGGCG TGGACGGGGGCGACC galT 5913397 - 5912282 - | UDP-glucose--hexose-1-phosphate uridylyltransferase TERM 2064 5912903 - 5912864 - G 73 -12.8 -3.50853 | gap 1 GTTCTCGAAGCAGAA CACCTGCCGGACCCCCGGC AGC GCCGACAGTTCGGC-GGTG CGGTCGGCCCAGACG TERM 2065 5914288 - 5914268 - g 76 -7.6 -4.36914 | gap 1, overlap 5914269 GGCTGCGGTAGAAAA TCC-CGACC CCAG GGTCGAGGA GGATGTCAAAATGAC TERM 2066 5914293 - 5914303 + G 83 -5.4 -4.82901 | AGGGTCGAGGAGGAT GTCA AAA TGAC TTTTTCTGGGCAAGA RHA1_ro05492 5913408 - 5914352 + | hypothetical protein TERM 2067 5914503 - 5914553 + T 84 -14.9 -3.30243 | opp_overlap 5914508 5914513, overlap 5914505 5914508 5914513 GAAACGCCACATGCT GAGAAGAGAACACCTCACCGG AACCCGAAC CCGGTGAGGTGTTTTCGTCTG TTCTGCCGGGTGGGT TERM 2068 5914505 - 5914551 + T 91 -17.5 -3.21924 | opp_overlap 5914508 5914513, overlap 5914503 5914508 5914513 AACGCCACATGCTGA GAAGAGAACACCTCACCGG AACCCGAAC CCGGTGAGGTGTTTTCGTC TGTTCTGCCGGGTGG TERM 2069 5914548 - 5914508 - T 90 -16.3 -3.32343 | opp_overlap 5914505 5914503 5914508 5914513, overlap 5914513 GCCACATGCTGAGAA GAGAACACCTCACCGGA ACCCGAA CCCGGTGAGGTGTTTTC GTCTGTTCTGCCGGG TERM 2070 5914508 - 5914548 + T 83 -17.8 -2.50074 | opp_overlap 5914508 5914513, overlap 5914505 5914503 5914513 GCCACATGCTGAGAA GAGAACACCTCACCGG AACCCGAAC CCGGTGAGGTGTTTTC GTCTGTTCTGCCGGG TERM 2071 5914513 - 5914543 + T 100 -14.1 -4.44819 | opp_overlap 5914508 5914513, overlap 5914508 5914505 5914503 ATGCTGAGAAGAGAA CACCTCACCGG AACCCGAAC CCGGTGAGGTG TTTTCGTCTGTTCTG TERM 2072 5914543 - 5914513 - T 89 -14.8 -3.75378 | opp_overlap 5914513 5914508 5914505 5914503, overlap 5914508 ATGCTGAGAAGAGAA CACCTCACCGGA ACCCGAA CCCGGTGAGGTG TTTTCGTCTGTTCTG RHA1_ro05493 5915110 - 5914568 - | hypothetical protein TERM 2073 5915162 - 5915172 + H 75 -3.2 -4.84359 | opp_overlap 5915145, overlap 5915145 TCCTCATTAGGAAGG CCTT CTC AGGG TTTTTCTCGGGGTCC RHA1_ro05494 5915207 - 5915563 + | hypothetical protein TERM 2074 5915556 - 5915573 + F 71 -10.5 -3.68292 | CCCACCAGCCCGCAC CCGGGTG ACCC CGCCCGG TTCTCTCTTCGGAGT RHA1_ro05495 5915634 - 5915894 + | hypothetical protein RHA1_ro05496 5916467 - 5915901 - | hypothetical protein TERM 2075 5916579 - 5916568 - H 82 -4.4 -5.01732 | AAGGCGCCGAAAAAA GATG TGGG CATC CGGGAACAAATCTCC TERM 2076 5916741 - 5916730 - H 83 -5.8 -4.90266 | overlap 5916731 TTCAGTAATGAAAAA CCTG CCCA CAGG ACTGCAAAACGAAAG dnaK1 5916768 - 5918612 + | molecular chaperone DnaK grpE1 5918609 - 5919259 + | heat shock protein GrpE dnaJ2 5919282 - 5920466 + | chaperone protein RHA1_ro05500 5920466 - 5920873 + | heat shock protein TERM 2077 5920944 - 5920900 - T 100 -22.4 -3.17075 | CTCGGGTGAACCGAA CCGATGTCGCACTGGTCC TGTCGGAGT GAACCAGTGCGACATCGG GCCCCAACCCCCGGC RHA1_ro05501 5921630 - 5921154 - | hypothetical protein TERM 2078 5921822 - 5921853 + H 75 -15 -2.78596 | opp_overlap 5921797 ACCGATCGGGGGACA GCGGGCCCGCGAAG TGCT CCGCGCGGGCCTGC TCTCGTGAGAAAGTG RHA1_ro05502 5921911 - 5922546 + | response regulator, two-component system RHA1_ro05503 5922548 - 5923732 + | sensor kinase, two-component system RHA1_ro05504 5924312 - 5923749 - | hypothetical protein RHA1_ro05505 5925860 - 5924382 - | oxidoreductase RHA1_ro05506 5927041 - 5925860 - | dehydrogenase TERM 2079 5926548 - 5926492 - G 70 -12.2 -3.31144 | gap 1, opp_overlap 5926493 GCCCGAGCCCGAGAA CGACGACGGAAC-CGCCGTCGGGTATG TCCG CGTACTCGACGGCCTGCCACGCCGTCG GCAGCACGTCGGACA RHA1_ro05507 5927445 - 5927038 - | cation transport regulator RHA1_ro05508 5927998 - 5927504 - | competence-damage inducible protein TERM 2080 5928134 - 5928121 - H 75 -4.5 -4.62984 | overlap 5928122 CCAGGACACAGAAAA TCCAG GCCG CCGGA CCACGCGCCTCGGCG TERM 2081 5929714 - 5929702 - g 73 -10.5 -3.83864 | AAAACTGGACAAGAA GGCGC TGC GCGCC CGGTACTGGGAAAGT RHA1_ro05509 5928173 - 5929750 + | acyl-CoA synthetase TERM 2082 5929823 - 5929837 + F 72 -12.8 -3.07816 | opp_overlap 5929820 TCTGCCCAAGTACTT CGCGGC GGG GCCGCG TTCGGTCGGTGACGA RHA1_ro05510 5929862 - 5931028 + | flavohemoprotein RHA1_ro05511 5931790 - 5931038 - | oxidoreductase RHA1_ro05512 5933070 - 5931850 - | flavohemoprotein RHA1_ro05513 5933217 - 5934299 + | antigenic 85 complex protein clpB1 5934469 - 5937021 + | ATP-binding subunit of heat shock protein ClpB TERM 2083 5937024 - 5937073 + F 100 -27.3 -4.07687 | overlap 5937028 CGTCCTCGGCTGATC CGTGGGTGAGTGGCGCGGTGTGC TCCC GCACGCCGTGCCACTCACCTGTG TTTTCACAGCGACGT TERM 2084 5937028 - 5937069 + F 100 -28.9 -3.39908 | overlap 5937024 CTCGGCTGATCCGTG GGTGAGTGGCGCGGTGTGC TCCC GCACGCCGTGCCACTCACC TGTGTTTTCACAGCG RHA1_ro05515 5937165 - 5938100 + | hypothetical protein RHA1_ro05516 5938186 - 5938998 + | hypothetical protein RHA1_ro05517 5939066 - 5939860 + | dehydrogenase pyrE 5939881 - 5940411 + | orotate phosphoribosyltransferase TERM 2085 5940458 - 5940421 - T 100 -20.7 -2.89564 | CTCTGACCGCACACA TGAGTGGCGAAGTGTGC CGAG GCACGCCTCGCCACTCA CGTGGGGTGGTCAGT RHA1_ro05519 5941737 - 5940469 - | multidrug ABC transporter RHA1_ro05520 5942209 - 5941772 - | MarR family transcriptional regulator TERM 2086 5942304 - 5942255 - R 100 -19.1 -3.2048 | overlap 5942246 TGTAAACCCGACGAA GTGCCGCTCGGCCCGCATCCGCC CCTC GGCGAGTGCGGGCCGCGAAGCTC AGGACGAGTGCTTCG RHA1_ro05521 5942758 - 5942303 - | hypothetical protein RHA1_ro05522 5944302 - 5942755 - | monooxygenase TERM 2087 5944213 - 5944165 - G 77 -15.3 -3.23216 | gap 1 CTCCAGGACGACGAA GTCCGTGAT-GCCGGCGCGTTC GAGCTT GACCGCGGCGGCGATCCCGGAC AGTCCGGCGCCGACC RHA1_ro05523 5944433 - 5944930 + | hypothetical protein benE 5946203 - 5944935 - | benzoate membrane transport protein BenE RHA1_ro05525 5946224 - 5946742 + | hypothetical protein RHA1_ro05526 5947389 - 5946748 - | TetR family transcriptional regulator RHA1_ro05527 5947493 - 5948221 + | hypothetical protein RHA1_ro05528 5948651 - 5948205 - | hypothetical protein RHA1_ro05529 5948766 - 5949362 + | hypothetical protein RHA1_ro05530 5949367 - 5950059 + | RNA methyltransferase RHA1_ro05531 5950094 - 5951212 + | alpha-1,6-mannanase RHA1_ro05532 5951281 - 5952636 + | nitrilotriacetate monooxygenase RHA1_ro05533 5952687 - 5953853 + | cobalamin synthesis protein RHA1_ro05534 5954515 - 5953850 - | hypothetical protein RHA1_ro05535 5955266 - 5954541 - | hypothetical protein fba 5955477 - 5956511 + | fructose-bisphosphate aldolase TERM 2088 5956520 - 5956569 + T 100 -25.1 -3.86897 | overlap 5956519 5956511 CGGATAGGCGCTTCG CGCCCGTGCGCCTTTCCGGTAGC CACC GCTACCGGAAGGGCGCATAGTCG TTTATCGGGGGTCGC RHA1_ro05537 5958337 - 5956571 - | hypothetical protein TERM 2089 5957020 - 5957049 + g 70 -15.7 -2.78384 | gap 1 GCCTCTTCGCGGGCT GCTGCGCCGCGGCG ACG CGTTGCGGCGC-GC TCTGCTGGGGCGGCA TERM 2090 5957627 - 5957666 + g 91 -20.6 -3.3785 | overlap 5957628 5957629 CTTGCCGGTGGTAGT GCCGGCCGCGGCCGGGCC GGAC GGTGTGTCCGCGGCCGGC TTCTGAGTCGATTCG TERM 2091 5958898 - 5958878 - g 71 -2.3 -4.57569 | overlap 5958879 5958880 GCAGGCCCTCAAAAA GGCGCGGGC AAC GCAGGCGTC CATCGACACGCTGCG RHA1_ro05538 5958384 - 5959388 + | hypothetical protein RHA1_ro05539 5959461 - 5960387 + | cation efflux transport protein RHA1_ro05540 5960457 - 5960867 + | hypothetical protein RHA1_ro05541 5961332 - 5960871 - | hypothetical protein RHA1_ro05542 5961396 - 5962352 + | transcriptional regulator RHA1_ro05543 5963539 - 5962370 - | thiolase TERM 2092 5963551 - 5963606 + r 100 -21.4 -3.20382 | overlap 5963554 5963555 TCATGATCGTTCCTT TCGGTGCTGTGAGTACTTGTCAACCG CGGG CGGTTGACAAGTACTCACGGGGTGGA TTCATCCGTGTGGCG TERM 2093 5963555 - 5963602 + r 100 -23 -2.57423 | overlap 5963554 5963551 GATCGTTCCTTTCGG TGCTGTGAGTACTTGTCAACCG CGGG CGGTTGACAAGTACTCACGGGG TGGATTCATCCGTGT RHA1_ro05544 5964976 - 5963570 - | major facilitator superfamily multidrug transporter TERM 2094 5964750 - 5964728 - G 73 -12.6 -3.45832 | overlap 5964729 CAACCCGAGAAGGAA TCCGCGCCGG CGG CCGACGCGGT CGGCCCAGCGTCCGA TERM 2095 5964749 - 5964729 - G 73 -16.1 -2.67017 | overlap 5964728 AACCCGAGAAGGAAT CCGCGCCGG CGG CCGACGCGG TCGGCCCAGCGTCCG RHA1_ro05545 5965084 - 5965683 + | hypothetical protein RHA1_ro05546 5965673 - 5966440 + | oxidoreductase RHA1_ro05547 5966460 - 5966732 + | hypothetical protein RHA1_ro05548 5966762 - 5967277 + | transcriptional regulator RHA1_ro05549 5968090 - 5967317 - | hypothetical protein RHA1_ro05550 5968752 - 5968087 - | hypothetical protein purA1 5968959 - 5970248 + | adenylosuccinate synthetase RHA1_ro05553 5971237 - 5970701 - | methylated-DNA--[protein]-cysteine S-methyltransferase RHA1_ro05552 5970298 - 5970765 + | racemase RHA1_ro05554 5971327 - 5972865 + | alkaline phosphatase RHA1_ro05555 5973137 - 5972838 - | hypothetical protein TERM 2096 5973449 - 5973421 - gR 84 -15.3 -3.32844 | GGGGGCACGGCAGAA CGGGCTGATGTTC CGG GCACACCAGCCCG GTTCCGACAGCTCGG RHA1_ro05556 5973113 - 5974597 + | transcriptional regulator/ aminotransferase RHA1_ro05557 5975746 - 5974649 - | alpha-methylacyl-CoA racemase TERM 2097 5974874 - 5974904 + g 71 -10.4 -3.7732 | opp_overlap 5974889, overlap 5974865 CGCCCACTCGTCGCG GGTCTTCGACAGGA ACT TCTCGGCGAAGACC TTCTTCATCTGCGGC RHA1_ro05558 5975892 - 5976269 + | dioxygenase RHA1_ro05559 5977178 - 5976276 - | dehydrogenase RHA1_ro05560 5978743 - 5977277 - | carboxylesterase RHA1_ro05561 5980269 - 5978740 - | carboxylesterase dldH5 5981767 - 5980334 - | dihydrolipoyl dehydrogenase RHA1_ro05563 5981856 - 5982608 + | short chain dehydrogenase RHA1_ro05564 5982618 - 5983982 + | NADH dehydrogenase RHA1_ro05565 5985243 - 5983984 - | hypothetical protein RHA1_ro05566 5986067 - 5985417 - | hypothetical protein pgi 5987781 - 5986129 - | glucose-6-phosphate isomerase TERM 2098 5987108 - 5987131 + g 72 -13.8 -3.16191 | CCGAGACCGCCCAGC AGCCACCGCC GCGC GGCGGTGGCG TTGGTGAGCGTCTCG TERM 2099 5987935 - 5987910 - g 70 -12.5 -3.28712 | opp_overlap 5987904, overlap 5987911 5987925 CCTCGGCGGCGAGAA GCGTGACGCCG AGAA CGGCGCCACGT TCACCGTTTTCGACC TERM 2100 5987934 - 5987911 - g 73 -16 -2.57132 | opp_overlap 5987904, overlap 5987910 5987925 CTCGGCGGCGAGAAG CGTGACGCCG AGAA CGGCGCCACG TTCACCGTTTTCGAC gabD4 5987839 - 5989305 + | succinate-semialdehyde dehydrogenase (NAD(P)+) RHA1_ro05569 5989640 - 5989344 - | hypothetical protein TERM 2101 5989749 - 5989722 - H 100 -15.6 -5.14563 | gap 1 CGTTTGACGAAAAAA GCCCCG-GATCCG GTG CGGACCTCGGGGC TCGTGAGCTGTTCAG RHA1_ro05570 5989914 - 5992400 + | ATP-dependent DNA helicase TERM 2102 5992456 - 5992406 - T 100 -31.4 -2.99947 | opp_overlap 5992414, overlap 5992412 5992414 CAAGCTGTAGAGACA CGAAAAGACGACTGCGGCGCATGC AAT GCATGCGCCGCAGTCGTGTGTTCG GGTGGTGCCGAGAGG TERM 2103 5992450 - 5992412 - T 100 -27.6 -4.41353 | opp_overlap 5992414, overlap 5992406 5992414 GTAGAGACACGAAAA GACGACTGCGGCGCATGC AAT GCATGCGCCGCAGTCGTG TGTTCGGGTGGTGCC TERM 2104 5992448 - 5992414 - T 100 -30.2 -3.80595 | opp_overlap 5992414, overlap 5992412 5992406 AGAGACACGAAAAGA CGACTGCGGCGCATGC AAT GCATGCGCCGCAGTCG TGTGTTCGGGTGGTG TERM 2105 5992414 - 5992448 + T 100 -30.2 -3.09289 | opp_overlap 5992414 5992412 5992406 AGAGACACGAAAAGA CGACTGCGGCGCATGC AAT GCATGCGCCGCAGTCG TGTGTTCGGGTGGTG RHA1_ro05571 5993539 - 5992478 - | lipoprotein RHA1_ro05572 5993771 - 5995723 + | hypothetical protein TERM 2106 5996646 - 5996612 - g 72 -5.6 -4.43309 | CAAGGCCAAGGAAAA CGACCTCAACTACG TCAAGCT CGACGGTGAGGTCG GCATCATCGGTAACG sucC 5995893 - 5997062 + | succinyl-CoA synthetase subunit beta sucD 5997078 - 5997980 + | succinyl-CoA synthetase subunit alpha TERM 2107 5997991 - 5998036 + T 100 -23.4 -2.71731 | overlap 5997987 CCTAGGCGCTCCGCG CCCGTGCGTGGTTGACGAGT CCAGAC ACTCGTCTCCCACGCACGGG TCGTTCAGGCATCGA RHA1_ro05575 5998667 - 5998041 - | hypothetical protein RHA1_ro05576 5998794 - 5999864 + | 34 kDa antigenic protein TERM 2108 5999913 - 5999880 - f 71 -12.4 -3.27298 | opp_overlap 5999881, overlap 5999881 CGGCCCAACCAGCAA GGTGGCCTCTGACC GAACGT GGTCGGAGGCCACT TCTGTGCGGCGCGCC TERM 2109 5999912 - 5999881 - f 77 -15.9 -2.56164 | opp_overlap 5999881, overlap 5999880 GGCCCAACCAGCAAG GTGGCCTCTGACC GAACGT GGTCGGAGGCCAC TTCTGTGCGGCGCGC TERM 2110 5999881 - 5999912 + F 93 -18.8 -3.48276 | opp_overlap 5999881 5999880 GGCCCAACCAGCAAG GTGGCCTCTGACCG AACG TGGTCGGAGGCCAC TTCTGTGCGGCGCGC RHA1_ro05577 5999977 - 6001500 + | hypothetical protein purN 6001569 - 6002234 + | phosphoribosylglycinamide formyltransferase purH 6002227 - 6003783 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 2111 6003802 - 6003828 + T 88 -15.8 -3.37796 | TCGGCAGCTCTCGAA CGGGTCTCGGCG TCA TGCCGGGGCCCG TTCTGCGTCGTCAGG RHA1_ro05580 6004072 - 6003839 - | hypothetical protein TERM 2112 6004133 - 6004106 - H 100 -13.5 -5.14698 | gap 1, opp_overlap 6004108 AAAGGTAAAAGAAAA GGCACCCGAGGG GTTTG CCCT-GGGTGCC CGAGAATGACTTGGT RHA1_ro05581 6004226 - 6005287 + | hypothetical protein TERM 2113 6006164 - 6006113 - g 77 -10.8 -3.87815 | gap 1 CGCGACGCCTACAAA TCCGACGG-CTTCGTTCCCGCCAAC TAC GCCGGCGTGAACGACGGCCTCCAGA CCCGCGCCGATGTGG RHA1_ro05582 6005480 - 6006640 + | hypothetical protein RHA1_ro05583 6007606 - 6006641 - | hypothetical protein RHA1_ro05584 6008196 - 6007624 - | hypothetical protein RHA1_ro05585 6008359 - 6008670 + | hypothetical protein RHA1_ro05586 6009322 - 6008678 - | transcriptional regulator RHA1_ro05587 6009410 - 6009874 + | hypothetical protein RHA1_ro05588 6009871 - 6010053 + | hypothetical protein RHA1_ro05589 6010114 - 6011502 + | magnesium chelatase subunit chlI RHA1_ro05590 6011502 - 6013475 + | hypothetical protein RHA1_ro05591 6014548 - 6013526 - | agmatine deiminase RHA1_ro05592 6015528 - 6014548 - | hydrolase RHA1_ro05593 6015691 - 6016302 + | tetracycline repressor RHA1_ro05594 6017842 - 6016262 - | amino acid transporter RHA1_ro05595 6018788 - 6017898 - | hypothetical protein gabD5 6020277 - 6018823 - | succinate-semialdehyde dehydrogenase (NAD(P)+) tynA 6022231 - 6020270 - | tyramine oxidase gabT3 6023653 - 6022313 - | 4-aminobutyrate aminotransferase TERM 2114 6022564 - 6022610 + g 73 -16.4 -2.62184 | opp_overlap 6022560, overlap 6022566 CACCGATGACACCGA CGTCGGCGGCCAGGGCCTTCAG CCG CGGCAGGGCCAGGTCGCCGATG TGCTGTGCGCGAGCG TERM 2115 6022566 - 6022608 + g 72 -15.4 -2.85351 | opp_overlap 6022560, overlap 6022564 CCGATGACACCGACG TCGGCGGCCAGGGCCTTCAG CCG CGGCAGGGCCAGGTCGCCGA TGTGCTGTGCGCGAG RHA1_ro05599 6025135 - 6023705 - | aldehyde dehydrogenase RHA1_ro05600 6027009 - 6025336 - | hypothetical protein RHA1_ro05601 6028427 - 6027009 - | amino acid transporter TERM 2116 6029144 - 6029111 - g 100 -24 -3.06696 | overlap 6029133 GGTTCTGTGAACAGA TCGGCTGCGGCGTC ACGGAA GACGCCGCAGCCGA ACGGGACTGACCGGG RHA1_ro05602 6028498 - 6029154 + | TetR family transcriptional regulator RHA1_ro05603 6030813 - 6029164 - | hypothetical protein RHA1_ro05604 6032069 - 6030831 - | transmembrane efflux protein TERM 2117 6033856 - 6033908 + G 70 -15.1 -2.70932 | gap 3 GCGCGCCGAACTGCT G-CTCG--CGATCATCGCCCGGCAGT CGTG ACTGCCGGGCAATGATCGGACGGGAC TACTTGCCGAGGCGG RHA1_ro05605 6032357 - 6033883 + | regulator of polyketide synthase expression RHA1_ro05606 6035269 - 6033908 - | putrescine oxidase RHA1_ro05607 6038503 - 6035321 - | NAD specific glutamate dehydrogenase RHA1_ro05608 6039816 - 6038653 - | major facilitator superfamily multidrug resistance protein TERM 2118 6039451 - 6039431 - G 75 -8.2 -4.11484 | overlap 6039432 GTCAATCCGGCAAAA CCCCGGTC CAGCT GACCGGGC GGGGAGAGGAGCGTG RHA1_ro05609 6040282 - 6039818 - | hypothetical protein RHA1_ro05610 6041226 - 6040297 - | hypothetical protein TERM 2119 6040631 - 6040605 - G 82 -13.7 -3.70902 | CCCCGTACAGCGAAA TGCCGAACGCG AGCAG CGCGCCCGGCA CCGACGCGCCGCCTA RHA1_ro05611 6041368 - 6042420 + | beta-lactamase TERM 2120 6042830 - 6042855 + G 75 -6.7 -4.41348 | overlap 6042841 CCGTGTGCAGTCGGG GCGCGGACCAC CACC GTGGACGGTGC TTTCTTTGGCGGAAC RHA1_ro05612 6042417 - 6042890 + | hypothetical protein RHA1_ro05613 6042961 - 6043554 + | hypothetical protein TERM 2121 6043602 - 6043564 - T 100 -21.3 -2.73364 | gap 1, opp_overlap 6043569, overlap 6043569 GGCTGACCGGAATGA CG-AAAGGCCGCGTAATC CGAG GATTACGCGGCCTTTTCG GTGCCTACGTGAGTT TERM 2122 6043596 - 6043569 - T 100 -20 -3.84514 | opp_overlap 6043569, overlap 6043564 ACCGGAATGACGAAA GGCCGCGTAATC CGAG GATTACGCGGCC TTTTCGGTGCCTACG TERM 2123 6043569 - 6043596 + T 100 -20 -4.19817 | opp_overlap 6043569 6043564 ACCGGAATGACGAAA GGCCGCGTAATC CGAG GATTACGCGGCC TTTTCGGTGCCTACG rpsR2 6043870 - 6043616 - | 30S ribosomal protein S18 rpsN 6044185 - 6043880 - | 30S ribosomal protein S14 rpmG 6044365 - 6044198 - | 50S ribosomal protein L33 rpmB 6044601 - 6044365 - | 50S ribosomal protein L28 RHA1_ro05618 6044727 - 6045965 + | hypothetical protein rpmE2 6045962 - 6046216 + | 50S ribosomal protein L31 type B rpmF 6046278 - 6046451 + | 50S ribosomal protein L32 TERM 2124 6046893 - 6046916 + G 79 -14.6 -3.30124 | opp_overlap 6046892, overlap 6046862 GTGCTGGTGAACGAG GTCCCGTTGC TGCT GCAGCGGGAC TTCTACGCGGTGCCG RHA1_ro05621 6046476 - 6047084 + | hypothetical protein RHA1_ro05622 6047153 - 6047839 + | response regulator (protein-glutamate methylesterase) RHA1_ro05623 6047839 - 6049314 + | sensor kinase, two-component system RHA1_ro05624 6049438 - 6050925 + | serine protease, C-terminal RHA1_ro05625 6050925 - 6051485 + | molybdenum cofactor biosynthesis protein TERM 2125 6052025 - 6052053 + F 77 -11.1 -3.73953 | gap 1, opp_overlap 6052014 GAAATTCCGGCAACT GGTCGTCCGCAG TTAACT CTGCGGAC-ACC TTTGCTGCGAATACT RHA1_ro05626 6052149 - 6052832 + | hypothetical protein RHA1_ro05627 6052904 - 6053581 + | hypothetical protein TERM 2126 6053593 - 6053650 + T 100 -20.9 -3.03771 | gap 4 CTGATAATTCGTTCC GC--CC-ATGACTCCGGGCCCGTGCACGC AGCT GC-TGCACGGGCCCGGAGTCGTCGGAAGC TATTCGCGGGTCTGC RHA1_ro05628 6054117 - 6053650 - | large-conductance mechanosensitive channel RHA1_ro05629 6054913 - 6054200 - | hypothetical protein RHA1_ro05630 6055319 - 6055011 - | hypothetical protein RHA1_ro05631 6056001 - 6055423 - | hypothetical protein galU2 6056107 - 6057027 + | UTP--glucose-1-phosphate uridylyltransferase RHA1_ro05633 6057047 - 6058306 + | molybdopterin biosynthesis protein RHA1_ro05634 6058332 - 6058967 + | ribosomal-protein-alanine N-acetyltransferase TERM 2127 6059374 - 6059335 - g 81 -12.8 -3.89346 | gap 1, overlap 6059316 6059338 CCCGGATTCGACAAA CCAGTGACGCAGCACTCGC GAC GCGCGTGCTGCACCGC-GG TGACGAACGTCCCGT RHA1_ro05635 6059241 - 6059981 + | hypothetical protein TERM 2128 6060194 - 6060157 - T 89 -18.5 -2.79183 | opp_overlap 6060157 6060160, overlap 6060160 CTCAGCTCCACCACA GAAGAGGCACTCACTCC ATCC GGAGAGGGTGCCTCTTC TGCATTCCGACCCAG TERM 2129 6060157 - 6060194 + T 100 -20.7 -2.52464 | opp_overlap 6060157 6060160, overlap 6060160 CTCAGCTCCACCACA GAAGAGGCACTCACTCC ATCC GGAGAGGGTGCCTCTTC TGCATTCCGACCCAG TERM 2130 6060191 - 6060160 - T 81 -14.4 -3.54653 | opp_overlap 6060157 6060160, overlap 6060157 AGCTCCACCACAGAA GAGGCACTCACTCC ATCC GGAGAGGGTGCCTC TTCTGCATTCCGACC TERM 2131 6060160 - 6060191 + T 90 -16.6 -3.41878 | opp_overlap 6060160 6060157, overlap 6060157 AGCTCCACCACAGAA GAGGCACTCACTCC ATCC GGAGAGGGTGCCTC TTCTGCATTCCGACC RHA1_ro05637 6060599 - 6060312 - | hypothetical protein TERM 2132 6060631 - 6060672 + H 77 -15.1 -2.80816 | opp_overlap 6060644, overlap 6060636 TCTACTCGATTCGCT CGATACCATGACAGCGGCG ACGT CGCCGTAGACGTGGTGTCG TGTCGTGAATACGAG RHA1_ro05638 6060699 - 6061592 + | cell surface protein RHA1_ro05639 6061595 - 6062095 + | hypothetical protein RHA1_ro05640 6062095 - 6063108 + | hypothetical protein zwf3 6064541 - 6063123 - | glucose-6-phosphate 1-dehydrogenase TERM 2133 6064214 - 6064244 + g 74 -14.7 -3.04799 | overlap 6064236 CTGACGCGTCGAGGT CTTCCCGCGCCTG CCGAA CGGTCGCGGGAAG TGTTCCCGGGTTGTC RHA1_ro05642 6065091 - 6064675 - | hypothetical protein RHA1_ro05643 6066014 - 6065451 - | hypothetical protein TERM 2134 6065885 - 6065915 + g 100 -22.6 -4.30719 | opp_overlap 6065891, overlap 6065887 GCGGTTGTGAACCGT CACGAACCGGCCCG GCG CGGGCCGGTTCGCG TTTCTTCTCGGGAAG TERM 2135 6065887 - 6065913 + g 95 -23.8 -2.50545 | opp_overlap 6065891, overlap 6065885 GGTTGTGAACCGTCA CGAACCGGCCCG GCG CGGGCCGGTTCG CGTTTCTTCTCGGGA TERM 2136 6065909 - 6065891 - G 85 -17.4 -3.16742 | opp_overlap 6065887 6065885 GTGAACCGTCACGAA CCGGCCCG GCG CGGGCCGG TTCGCGTTTCTTCTC RHA1_ro05644 6066019 - 6066858 + | short chain dehydrogenase RHA1_ro05645 6068907 - 6066862 - | bifunctional ABC lipid A transporter: ATP-binding/ permease RHA1_ro05646 6069614 - 6068985 - | hypothetical protein RHA1_ro05647 6071239 - 6069800 - | phosphoserine phosphatase (PSP)/ 1-acylglycerol-3-phosphate O-acyltransferase (PlsC) plsB 6073502 - 6071244 - | glycerol-3-phosphate acyltransferase RHA1_ro05649 6074974 - 6073520 - | hypothetical protein RHA1_ro05650 6075099 - 6075542 + | hypothetical protein RHA1_ro05651 6075593 - 6076087 + | hypothetical protein soxR 6076570 - 6076091 - | redox-sensitive transcriptional activator RHA1_ro05653 6077142 - 6076612 - | hypothetical protein TERM 2137 6077112 - 6077061 - G 74 -14.2 -3.34344 | opp_overlap 6077083, overlap 6077065 6077070 6077093 CCAGGGCGGAAGGAA CGTACGGAAGTGGCGGCGTGTTCG CAGA CGAACTCGCCGCCGCATCCGAGTG CGCCGGCGAGAGAGT TERM 2138 6077108 - 6077065 - G 86 -22.4 -2.60244 | opp_overlap 6077083, overlap 6077061 6077070 6077093 GGCGGAAGGAACGTA CGGAAGTGGCGGCGTGTTCG CAGA CGAACTCGCCGCCGCATCCG AGTGCGCCGGCGAGA TERM 2139 6077103 - 6077070 - G 82 -18.1 -3.10677 | opp_overlap 6077083, overlap 6077065 6077061 6077093 AAGGAACGTACGGAA GTGGCGGCGTGTTCG CAGA CGAACTCGCCGCCGC ATCCGAGTGCGCCGG TERM 2140 6077122 - 6077093 - G 79 -15 -3.25823 | opp_overlap 6077083, overlap 6077070 6077065 6077061 GTGTTCGCAGACGAA CTCGCCGCCGCA TCCGAG TGCGCCGGCGAG AGAGTCGAGTTCTCG RHA1_ro05654 6077250 - 6078467 + | arginine deiminase RHA1_ro05655 6078837 - 6078481 - | arsenate reductase RHA1_ro05656 6078925 - 6079608 + | hypothetical protein RHA1_ro05657 6079679 - 6080041 + | transcriptional regulator RHA1_ro05658 6080092 - 6080523 + | hypothetical protein TERM 2141 6080531 - 6080513 - f 75 -4.4 -4.59773 | overlap 6080515 CGGGATGGGGAAAAA CCGCAGCG TGA CGATGCCG TAGGCTGGGTCTCGA TERM 2142 6080608 - 6080590 - f 70 -6 -4.21194 | opp_overlap 6080594 TTTTACCATCGAAAA TGACCAAC GTA GTTGTTCA TGGCAATGAATACTG RHA1_ro05659 6080608 - 6082245 + | BCCT family glycine betaine transporter TERM 2143 6082298 - 6082253 - T 71 -10.4 -3.61232 | gap 2, opp_overlap 6082257, overlap 6082251 6082254 CCCGCTAGAGAAACA GTCTGCGAGCCGCTCGGTGTCC CACG GGAC-CCGGGCGGCTCG-ACTC ATTCCGGGGTCAGCG TERM 2144 6082257 - 6082296 + T 87 -18.7 -2.71731 | opp_overlap 6082253 6082254 6082251 CTAGAGAAACAGTCT G-CGAGCCGCTCGGTGTCC CACG GGAC-CCGGGCGGCTCGAC TCATTCCGGGGTCAG RHA1_ro05660 6083849 - 6082362 - | hypothetical protein RHA1_ro05661 6083945 - 6084775 + | hypothetical protein RHA1_ro05662 6086043 - 6084793 - | hypothetical protein metS1 6087635 - 6086076 - | methionyl-tRNA synthetase RHA1_ro05664 6088543 - 6087689 - | short chain dehydrogenase RHA1_ro05665 6088618 - 6089460 + | TatD family deoxyribonuclease RHA1_ro05666 6089584 - 6090039 + | hypothetical protein TERM 2145 6090081 - 6090050 - T 100 -24.6 -3.06796 | TCTGACCCCATGTAA GTGGCGAAGCGTGC CCCG GCACGCTTCGCCAC TCACGTGTCAGAGGA glnQ 6090844 - 6090089 - | glutamine transport ATP-binding protein GlnQ RHA1_ro05668 6092325 - 6090856 - | glutamine transport system permease protein TERM 2146 6092353 - 6092370 + H 71 -9.8 -3.74361 | TTCTCAGTCAGTAGT GCCCGG TCGCTT CCGGGC TTCTTGGTGCATGTC RHA1_ro05669 6092567 - 6093682 + | hypothetical protein RHA1_ro05670 6093705 - 6094832 + | hypothetical protein ksgA 6094843 - 6095733 + | dimethyladenosine transferase RHA1_ro05672 6096094 - 6095741 - | hypothetical protein RHA1_ro05673 6096168 - 6096371 + | cold shock protein TERM 2147 6096411 - 6096449 + T 100 -24.1 -3.53444 | gap 1, opp_overlap 6096375 6096418 CCGGGACATGACGTT CGAG-CAAGGCCCCACTC GTCA GAGTGGGGCCTTGACTCG TTTCCGACCGGCTAC TERM 2148 6096441 - 6096418 - T 89 -18.2 -3.1505 | opp_overlap 6096411 ATGACGTTCGAGCAA GGCCCCACTC GTCA GAGTGGGGCC TTGACTCGTTTCCGA RHA1_ro05674 6096895 - 6096461 - | hypothetical protein RHA1_ro05675 6097999 - 6097001 - | hypothetical protein RHA1_ro05676 6098137 - 6099039 + | hypothetical protein dctA3 6100418 - 6099033 - | C4-dicarboxylate transporter ureA 6100558 - 6100860 + | urease subunit gamma ureB 6100869 - 6101183 + | urease beta subunit TERM 2149 6101515 - 6101497 - g 74 -14.6 -3.09933 | opp_overlap 6101510, overlap 6101508 CGGCAAGGCAGGCAA CCCCGACA CGA TGTCGGGG GTCCACCCCGATCTG ureC 6101180 - 6102901 + | urease subunit alpha ureF 6102901 - 6103533 + | urease accessory protein UreF ureG 6103568 - 6104257 + | urease accessory protein UreG RHA1_ro05683 6104257 - 6104910 + | urease accessory protein UreD RHA1_ro05684 6104983 - 6105918 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase RHA1_ro05685 6105918 - 6107702 + | ABC drug resistance transporter, ATP-binding protein RHA1_ro05686 6109212 - 6107716 - | acetyl-CoA acetyltransferase RHA1_ro05687 6109570 - 6110073 + | hypothetical protein RHA1_ro05688 6110120 - 6110533 + | hypothetical protein RHA1_ro05689 6110561 - 6111238 + | pyridoxamine 5prime-phosphate oxidase RHA1_ro05690 6111763 - 6111257 - | hypothetical protein TERM 2150 6111893 - 6111835 - R 74 -11.6 -3.60627 | gap 1, opp_overlap 6111835 6111878, overlap 6111836 6111839 CGATTCGACCTGAAA GCTACCAGGAGGGTCCGGCGGGCCGCA CACCTC TACGGCTCACCGGACCCCCTCGGCC-C TCAATTCCCGGGCCC TERM 2151 6111890 - 6111839 - R 91 -20.1 -2.65354 | opp_overlap 6111835 6111878, overlap 6111835 6111836 TCGACCTGAAAGCTA CCAGGAGGGTCCGGCGGGCCGCA CACCTC TACGGCTCACCGGACCCCCTCGG CCCTCAATTCCCGGG RHA1_ro05691 6112080 - 6111874 - | hypothetical protein prfC 6114164 - 6112365 - | peptide chain release factor RF3 RHA1_ro05693 6114263 - 6115912 + | acyl-CoA synthetase RHA1_ro05694 6116551 - 6115979 - | peptidyl-tRNA hydrolase TERM 2152 6116636 - 6116593 - R 100 -27.5 -2.62184 | overlap 6116595 6116617 6116618 GGTCGTGTCAGACGA CAGCGGCGCGTCACCCCGG GACAAT CCGGGACGACGCGCCGCCG ACATCAGTGCGGTTG TERM 2153 6116634 - 6116595 - R 100 -26.5 -2.85351 | overlap 6116593 6116617 6116618 TCGTGTCAGACGACA GCGGCGCGTCACCCCGG GACAAT CCGGGACGACGCGCCGC CGACATCAGTGCGGT rplY 6117283 - 6116660 - | 50S ribosomal protein L25/general stress protein Ctc RHA1_ro05696 6117617 - 6119404 + | dimethylaniline monooxygenase (N-oxide-forming) TERM 2154 6119427 - 6119446 + F 77 -12.8 -3.30124 | opp_overlap 6119427 TGGTGTGGCTCACAA CGCCGGGG GTAG CCTCGGCG TTGTGAGCGCTGAAC RHA1_ro05697 6119449 - 6120651 + | transcriptional regulator RHA1_ro05698 6122130 - 6120658 - | hypothetical protein TERM 2155 6121067 - 6121092 + g 80 -16.1 -3.21099 | opp_overlap 6121066, overlap 6121086 TGGACGCGCAGGAAC GGCGTGGCCGT GGTG GCGGCCGCGCC TTCCTCGTACGACGC TERM 2156 6121535 - 6121549 + g 82 -11.4 -4.10657 | overlap 6121548 CGCATGTCGTATTCG GCTCGG ACC CCGAGC TTTTCGGCGGTCTCG RHA1_ro05699 6123600 - 6122425 - | cysteine desulfurase RHA1_ro05700 6123747 - 6124961 + | glutamate--cysteine ligase RHA1_ro05701 6124961 - 6126265 + | sulfatase modifying factor RHA1_ro05702 6126267 - 6127013 + | hypothetical protein RHA1_ro05703 6127010 - 6127984 + | hypothetical protein TERM 2157 6128866 - 6128833 - g 74 -16.7 -2.76263 | overlap 6128830 TGGACCAGGGAACGA CCCGCGACGACGAGG TGAA CCTCCTGGTCGCGGG AGGGAATTACGGCTA RHA1_ro05704 6128058 - 6129251 + | hypothetical protein TERM 2158 6129310 - 6129268 - T 90 -17.1 -3.34962 | gap 2 CTTCACACGTCAGAA CCACGC-G-AGGGTCCGGCAG GGG CCGCCGGATCCTCCTGCGTGG GTGGGGGCGCCGACC RHA1_ro05705 6130137 - 6129262 - | hypothetical protein RHA1_ro05706 6130282 - 6130767 + | hypothetical protein TERM 2159 6130804 - 6130848 + TF 100 -25.3 -3.05715 | gap 1, opp_overlap 6130808 6130834, overlap 6130794 6130804 6130808 6130822 6130822 CTGCTCCGCCCCGCA CGAACGGGACGCTCGTTGCG TCAGAT CG-AACGAGCGTCCCGTTCG TTCAGTGGGACAGTT TERM 2160 6130808 - 6130844 + TF 100 -18.9 -3.37344 | gap 1, opp_overlap 6130808 6130834, overlap 6130794 6130804 6130804 6130822 6130822 TCCGCCCCGCACGAA CGGGACGCTCGTTGCG TCAGAT CG-AACGAGCGTCCCG TTCGTTCAGTGGGAC TERM 2161 6130844 - 6130808 - Tf 93 -18.9 -3.14132 | gap 1, opp_overlap 6130794 6130804 6130808 6130804 6130822 6130822, overlap 6130834 TCCGCCCCGCACGAA CGGGACGCTCGTTGCG TCAGAT CG-AACGAGCGTCCCG TTCGTTCAGTGGGAC RHA1_ro05707 6132241 - 6130850 - | amine oxidase (flavin-containing) RHA1_ro05708 6132221 - 6132541 + | hypothetical protein RHA1_ro05709 6132541 - 6134031 + | hypothetical protein TERM 2162 6134658 - 6134690 + G 80 -16.9 -3.21416 | overlap 6134659 TTCCTCCGTGCCGCA CTCGCGGCCGTCCGT GCG GCGGTCGGCCGCGAC TTCGTGGTCGGGATG TERM 2163 6134659 - 6134689 + G 82 -20.4 -2.52635 | overlap 6134658 TCCTCCGTGCCGCAC TCGCGGCCGTCCGT GCG GCGGTCGGCCGCGA CTTCGTGGTCGGGAT RHA1_ro05710 6134037 - 6136001 + | reductase RHA1_ro05711 6136640 - 6136005 - | TetR family transcriptional regulator ilvB4 6138319 - 6136718 - | acetolactate synthase large subunit RHA1_ro05713 6139581 - 6138421 - | acyl-CoA dehydrogenase RHA1_ro05714 6141082 - 6139649 - | dehydrogenase RHA1_ro05715 6141948 - 6141079 - | short chain dehydrogenase RHA1_ro05716 6144008 - 6141945 - | acid--CoA ligase RHA1_ro05717 6144250 - 6145737 + | amino acid transporter, permease component RHA1_ro05718 6146340 - 6145762 - | transcriptional regulator TERM 2164 6145942 - 6145918 - G 74 -13.5 -3.28712 | opp_overlap 6145907 CTCCTCGCCGGAGAA CCCCGCCTGCC CCA GGAAGGCGGAG CCCAGCGATTCGATG RHA1_ro05719 6147584 - 6146337 - | cytochrome P450 CYP130 RHA1_ro05720 6147998 - 6147612 - | hypothetical protein RHA1_ro05721 6148845 - 6148042 - | hypothetical protein RHA1_ro05722 6149505 - 6148870 - | hypothetical protein TERM 2165 6149571 - 6149513 - R 100 -21.9 -3.76775 | gap 1, overlap 6149514 GTGAACACAGGGAAA GGCTACGCCTGTGAGTGGTTGGCGAGTC TCTG GACTCGTCAACCACTCACAGGCGCGGA- GCTCCTAGGCGTTGC TERM 2166 6149571 - 6149514 - R 100 -27.9 -2.85583 | overlap 6149513 TGAACACAGGGAAAG GCTACGCCTGTGAGTGGTTGGCGAGTC TCTG GACTCGTCAACCACTCACAGGCGCGGA GCTCCTAGGCGTTGC prsA 6150556 - 6149576 - | ribose-phosphate pyrophosphokinase RHA1_ro05724 6152055 - 6150553 - | UDP-N-acetylglucosamine diphosphorylase/ glucosamine-1-phosphate N-acetyltransferase RHA1_ro05726 6152386 - 6153054 + | TetR family transcriptional regulator RHA1_ro05727 6153169 - 6153810 + | TetR family transcriptional regulator RHA1_ro05728 6155121 - 6153832 - | glutamate-1-semialdehyde 2,1-aminomutase RHA1_ro05729 6155483 - 6155130 - | hypothetical protein RHA1_ro05731 6157523 - 6156825 - | ribosomal-protein-alanine N-acetyltransferase RHA1_ro05730 6155459 - 6156883 + | polysaccharide pyruvyl transferase RHA1_ro05732 6157810 - 6158922 + | hypothetical protein RHA1_ro05733 6159564 - 6158947 - | hypothetical protein RHA1_ro05734 6160931 - 6159567 - | mannuronan epimerase RHA1_ro05735 6162322 - 6160928 - | protein-tyrosine kinase, C-terminal RHA1_ro05736 6164001 - 6162328 - | hypothetical protein TERM 2167 6163310 - 6163281 - G 70 -12.1 -3.31144 | overlap 6163285 CGGCTATTCCCAGAA CCGAGATCGCCGC GATC GCGGCGACCTTGA CCCTGGACCATCCGG RHA1_ro05737 6165030 - 6164026 - | hypothetical protein RHA1_ro05738 6166316 - 6165027 - | MOP superfamily O-antigen transporter TERM 2168 6165385 - 6165370 - G 71 -2.6 -4.56775 | gap 1 ATGGCCTCGGAAAAA TCG-CTT CCG AAGACGA GGTTGATCAGGGCCG RHA1_ro05739 6167490 - 6166309 - | glycosyltransferase RHA1_ro05740 6168509 - 6167487 - | glycosyltransferase RHA1_ro05741 6168848 - 6169696 + | glycosyl transferase RHA1_ro05742 6171228 - 6169780 - | sugar transferase RHA1_ro05743 6172463 - 6171225 - | transferase RHA1_ro05744 6172526 - 6173080 + | dTDP-4-dehydrorhamnose 3,5-epimerase RHA1_ro05745 6174140 - 6173100 - | UDP-glucose 4-epimerase TERM 2169 6173865 - 6173814 - G 100 -10.9 -4.99035 | gap 3, opp_overlap 6173814 6173816 CGAGGCATACAAAAA TCGC-CGCACA-CCGGCTTGCTTCGC CAG GCGA-GCCAGCCGGACGGACGCGCGA TGGTTGATTTCGTAC RHA1_ro05746 6174792 - 6174142 - | hypothetical protein RHA1_ro05747 6175586 - 6174792 - | glucose-1-phosphate cytidylyltransferase RHA1_ro05748 6176842 - 6175583 - | methyltransferase RHA1_ro05749 6177192 - 6177644 + | AraC family transcriptional regulator TERM 2170 6177889 - 6177910 + G 71 -2.2 -4.58283 | gap 1 CGAGATCGGTGACGT GCTGGTGCG TGTCC CG-GCCGGC TTTTTCGCCAAGTTC RHA1_ro05750 6177653 - 6178078 + | hypothetical protein RHA1_ro05751 6178272 - 6179048 + | hypothetical protein TERM 2171 6179090 - 6179146 + G 80 -15.8 -3.14344 | CTGCTGCTCGACGAG GACCACTCCGAGGACGCGGCGG TACTCGACCGCCT CCGCCGCGACCCCGCGGTGGTC TTCGTCGACCGGCTC TERM 2172 6179697 - 6179669 - g 85 -21.7 -2.53876 | CTGGACGTGAAGGTA TCCCTGCGGCGGG AGG CCCGCCGCAGGGG ATTGCCGGTGCTGAT RHA1_ro05752 6179045 - 6181174 + | hypothetical protein RHA1_ro05753 6181189 - 6183033 + | hypothetical protein RHA1_ro05754 6183252 - 6183689 + | holo-[acyl-carrier-protein] synthase RHA1_ro05755 6183686 - 6183928 + | acyl carrier protein RHA1_ro05756 6183925 - 6185133 + | acyl-CoA dehydrogenase RHA1_ro05757 6185130 - 6186080 + | hypothetical protein RHA1_ro05758 6186077 - 6187042 + | hypothetical protein RHA1_ro05759 6187042 - 6189447 + | O-glycosyl hydrolase RHA1_ro05760 6189629 - 6193276 + | transcription repair coupling factor RHA1_ro05761 6193281 - 6194147 + | nucleoside triphosphate pyrophosphohydrolase TERM 2173 6194751 - 6194731 - g 72 -6.7 -4.26792 | ACACAAAGCCGAAAA GGCAAGGGC AAT GCCTTGGCC TGCGGTTTCCTCGCC RHA1_ro05762 6194437 - 6195282 + | glycosyltransferase RHA1_ro05763 6195289 - 6196239 + | glycosyltransferase TERM 2174 6197333 - 6197354 + G 78 -9.4 -4.31293 | gap 1 GCTCGCAGTGCGCAT CGCCGTGCG GCAGG CGC-CGGCG TTTCTTCGTCTGTCG RHA1_ro05764 6196236 - 6197546 + | glycosyltransferase RHA1_ro05765 6197530 - 6199305 + | hypothetical protein RHA1_ro05766 6199308 - 6200681 + | hypothetical protein RHA1_ro05767 6200668 - 6201912 + | hypothetical protein RHA1_ro05768 6201915 - 6202586 + | hypothetical protein RHA1_ro05769 6202579 - 6203415 + | glucan endo-1,3-beta-D-glucosidase RHA1_ro05770 6203408 - 6205516 + | hypothetical protein RHA1_ro05771 6205572 - 6206411 + | glucan endo-1,3-beta-D-glucosidase TERM 2175 6208498 - 6208544 + G 80 -17.3 -2.90194 | gap 1, overlap 6208485 CACAGCCGAACGCGG CCGTTTCG-GACCGGCTGGGTG TCGC CACCCGGTCGGTCACGGCGCGG TGTGATTGCGGCGCT RHA1_ro05772 6206791 - 6210765 + | hypothetical protein RHA1_ro05773 6212089 - 6210803 - | hypothetical protein RHA1_ro05774 6213225 - 6212086 - | hypothetical protein RHA1_ro05775 6214267 - 6213242 - | hypothetical protein RHA1_ro05776 6214374 - 6215183 + | hypothetical protein TERM 2176 6215232 - 6215278 + F 77 -11.5 -3.71645 | gap 2, opp_overlap 6215229 6215228, overlap 6215233 CCACATCGAAAGGTG TCGCGCGGGCGGATCGCCCGGCC GCG GGGCGCGCCATCC-CCCGC-CGG TTTCGGTGTGCCGTT eno 6215381 - 6216667 + | phosphopyruvate hydratase RHA1_ro05778 6216701 - 6217426 + | hypothetical protein RHA1_ro05779 6217423 - 6217977 + | hypothetical protein TERM 2177 6218771 - 6218754 - g 72 -14.1 -3.13728 | ATGACCCACACCGAA CGGGCCG CGCT CGGCCCG ATGCACCCGGGGCGG RHA1_ro05780 6217974 - 6218918 + | Ppx/GppA family phosphatase RHA1_ro05782 6219845 - 6219069 - | trans-aconitate 2-methyltransferase RHA1_ro05783 6220238 - 6219867 - | hypothetical protein RHA1_ro05784 6220836 - 6220393 - | hypothetical protein RHA1_ro05785 6220926 - 6221438 + | hypothetical protein RHA1_ro05786 6221435 - 6222037 + | metallophosphoesterase (GP66) RHA1_ro05787 6222998 - 6222009 - | AraC family transcriptional regulator TERM 2178 6223025 - 6223049 + r 74 -12.7 -3.28712 | GCGTTTGACGGCTTC GCGGGCGGCGG TGC CCGACGCCAGC TTCTCCAGCAACCCG RHA1_ro05788 6223543 - 6223004 - | MarR family transcriptional regulator RHA1_ro05789 6224467 - 6223634 - | (+)-trans-carveol dehydrogenase RHA1_ro05790 6225235 - 6224492 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro05791 6226196 - 6225261 - | dehydrogenase RHA1_ro05792 6226363 - 6227904 + | major facilitator superfamily multidrug transporter TERM 2179 6227927 - 6227947 + T 87 -18.3 -2.65815 | CTTGCCGGACCACGA GGCCCGCAG CAT CTGCGGGCC TCGTGTCGGTGTGGC RHA1_ro05793 6228456 - 6227974 - | hypothetical protein RHA1_ro05794 6229349 - 6228453 - | hypothetical protein RHA1_ro05795 6229551 - 6230444 + | IclR family transcriptional regulator RHA1_ro05796 6231014 - 6230478 - | oxidoreductase RHA1_ro05797 6231212 - 6232087 + | alpha/beta-fold C-C bond hydrolase TERM 2180 6232319 - 6232287 - g 70 -12.8 -3.28924 | gap 1, overlap 6232288 GACGCTGCGGGAGAA GGGCGTGATCGACTC ACGG GAGTCGATC-CGCCG CTACCTCGACATCAT TERM 2181 6232318 - 6232288 - g 73 -16.3 -2.57211 | gap 1, overlap 6232287 ACGCTGCGGGAGAAG GGCGTGATCGACTC ACGG GAGTCGATC-CGCC GCTACCTCGACATCA TERM 2182 6233005 - 6232980 - g 70 -12.5 -3.35679 | overlap 6232982 CGGTGCCAGGGAGAA CACCGGCGACG GCAT CGTCGCCGGCC AGAAGCTCGGCGCGG TERM 2183 6233003 - 6232982 - g 85 -17.3 -3.24924 | overlap 6232980 GTGCCAGGGAGAACA CCGGCGACG GCAT CGTCGCCGG CCAGAAGCTCGGCGC RHA1_ro05798 6232084 - 6233796 + | 3-ketosteroid-delta-1-dehydrogenase RHA1_ro05799 6233796 - 6234581 + | 2-keto-4-pentenoate hydratase RHA1_ro05800 6234593 - 6235495 + | acetaldehyde dehydrogenase RHA1_ro05801 6235531 - 6236589 + | 4-hydroxy-2-ketovalerate aldolase RHA1_ro05802 6236630 - 6237808 + | hydroxylase RHA1_ro05803 6237897 - 6238808 + | extradiol dioxygenase, type I TERM 2184 6238892 - 6238928 + G 70 -15 -2.78384 | GCGACTTCCGAGACG GCGGCGGATCCGGCCG CACTC CGGCCGGGACAGCTGC TGTCGTCCCGCGCAG RHA1_ro05804 6238805 - 6239959 + | hypothetical protein RHA1_ro05805 6240085 - 6240381 + | hypothetical protein RHA1_ro05806 6240400 - 6241242 + | hypothetical protein RHA1_ro05807 6242474 - 6241239 - | transmembrane protein RHA1_ro05808 6243359 - 6242544 - | hypothetical protein RHA1_ro05809 6243591 - 6244376 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro05810 6245177 - 6244386 - | dehydrogenase RHA1_ro05811 6246637 - 6245432 - | dioxygenase Rieske iron-sulfur component TERM 2185 6245513 - 6245553 + g 71 -11.2 -3.55444 | gap 1, overlap 6245514 6245516 CTTCCACGACTCGAC CGGCCGGGTGGTGTCGAGT TCGA ACTCGA-ACCGCTCGGTCA TTTGCGGGGTCACCG TERM 2186 6245514 - 6245552 + g 70 -14.7 -2.73124 | gap 1, overlap 6245513 6245516 TTCCACGACTCGACC GGCCGGGTGGTGTCGAGT TCGA ACTCGA-ACCGCTCGGTC ATTTGCGGGGTCACC TERM 2187 6247903 - 6247860 - g 95 -27.5 -2.71364 | overlap 6247813 GCACGTGGCCAACGA GCCCGAACGCGCCCTCGCC CTGTTC GGCAGGGGCGCGTTCGGGC TCCCGGTGGAGGACA RHA1_ro05812 6246763 - 6247929 + | hydroxylase RHA1_ro05813 6249468 - 6247930 - | 3-oxosteroid 1-dehydrogenase RHA1_ro05814 6249653 - 6250264 + | TetR family transcriptional regulator TERM 2188 6250425 - 6250400 - f 85 -7.5 -4.6644 | overlap 6250389 6250403 6250404 AATACATTTCAAAAA TGAGCCGCGGA CGCG TCCGCGAGCCA GAAGAACCCAAGGAG RHA1_ro05815 6250447 - 6251610 + | acetyl-CoA acetyltransferase TERM 2189 6252758 - 6252787 + G 82 -15.8 -3.29144 | gap 1, opp_overlap 6252776 TCGGCATCGACCTTC CGTCGGACGCGGA GGACA TCCGCG-CCGACG TTGTCGCGGAACTCG RHA1_ro05816 6251635 - 6253863 + | acyl-CoA dehydrogenase RHA1_ro05817 6253870 - 6254742 + | MaoC family dehydratase RHA1_ro05818 6254739 - 6255389 + | hypothetical protein RHA1_ro05819 6255642 - 6256223 + | (+)-trans-carveol dehydrogenase RHA1_ro05820 6257967 - 6256306 - | CoA ligase TERM 2190 6258742 - 6258691 - g 74 -11.5 -3.68222 | gap 2 CCCGAAGGTCAACAA GCGCACGGACCGGTACGGCGGATCG CTGG CGAACCG-CGC-CCGGTTCGCGCTC GAGACCGCCCGCGCC RHA1_ro05821 6258122 - 6259315 + | NADH-dependent flavin oxidoreductase RHA1_ro05822 6259342 - 6261009 + | acyl-CoA synthetase RHA1_ro05823 6261023 - 6261910 + | hypothetical protein RHA1_ro05824 6262361 - 6261894 - | hypothetical protein RHA1_ro05825 6262474 - 6263640 + | acyl-CoA dehydrogenase TERM 2191 6264220 - 6264265 + G 70 -14.8 -2.78384 | CCTTCTGGTTCGCGG CCGCACGT-GAGCACCGCCTGG TCAT CCAG-CGGTGCGCGAGGTGCGG TGTGCTGCGGCACCC RHA1_ro05826 6263637 - 6264575 + | hypothetical protein RHA1_ro05827 6264575 - 6265687 + | acyl-CoA dehydrogenase RHA1_ro05828 6265684 - 6266115 + | hypothetical protein RHA1_ro05829 6266112 - 6267290 + | lipid-transfer protein RHA1_ro05830 6267293 - 6268105 + | hypothetical protein RHA1_ro05831 6268956 - 6268183 - | short chain dehydrogenase RHA1_ro05832 6269078 - 6269839 + | reductase kshB 6269971 - 6271023 + | ketosteroid-9-alpha-hydroxylase, reductase RHA1_ro05834 6271905 - 6271036 - | glutamine amidotransferase RHA1_ro05835 6272661 - 6271930 - | hypothetical protein TERM 2192 6272723 - 6272772 + r 74 -12.7 -3.28712 | gap 1, opp_overlap 6272728 6272730 6272731, overlap 6272726 6272727 ACCCCTGTTCGTGGG CAGAACAG-CCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGGACCCGGGTG TTCTCAGCCCAGCGC TERM 2193 6272726 - 6272770 + r 74 -12.8 -3.21276 | gap 2, opp_overlap 6272728 6272730 6272731, overlap 6272723 6272727 CCTGTTCGTGGGCAG AAC-AG-CCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGGACCCGGG TGTTCTCAGCCCAGC TERM 2194 6272727 - 6272769 + r 80 -16.3 -2.52623 | gap 2, opp_overlap 6272728 6272730 6272731, overlap 6272726 6272723 CTGTTCGTGGGCAGA AC-AG-CCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGGACCCGG GTGTTCTCAGCCCAG TERM 2195 6272766 - 6272728 - R 100 -22.4 -3.28712 | opp_overlap 6272727 6272726 6272723, overlap 6272730 6272731 TGTTCGTGGGCAGAA CAGCCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGGACC CGGGTGTTCTCAGCC TERM 2196 6272764 - 6272730 - R 100 -27.2 -3.21276 | opp_overlap 6272727 6272726 6272723, overlap 6272728 6272731 TTCGTGGGCAGAACA GCCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGGA CCCGGGTGTTCTCAG TERM 2197 6272763 - 6272731 - R 100 -30.7 -2.52623 | opp_overlap 6272727 6272726 6272723, overlap 6272730 6272728 TCGTGGGCAGAACAG CCGCCCGGTCCGGGA CGA TCCCGGACCGGGCGG ACCCGGGTGTTCTCA RHA1_ro05836 6274239 - 6272776 - | catalase RHA1_ro05837 6277937 - 6274440 - | serine/threonine-protein kinase TERM 2198 6276412 - 6276447 + g 74 -13.4 -3.30124 | gap 1 AGCCCCGCCTGGCTT CGGCTGCTGACCACC ATCTGCA GGTGGT-GGCAGCCG TTCTCCAGGATGAAG TERM 2199 6277023 - 6277064 + g 72 -13.7 -3.14344 | GGCGGGGAGCGCCAT CTCGTCGACATCGAGCCCG TGCC TGCGCTCGATGTCGCGGAG TTCCTGCCCGAACTC RHA1_ro05838 6278041 - 6278748 + | hypothetical protein RHA1_ro05839 6278750 - 6279892 + | rRNA (guanine-N(2)-)-methyltransferase RHA1_ro05840 6279990 - 6280910 + | hypothetical protein TERM 2200 6280956 - 6280923 - T 100 -26.9 -3.09289 | opp_overlap 6280926, overlap 6280926 TAGCAGTTCAACAGA GAAGGCCCCCGAGAG CATG CTCTCGGGGGCCTTC TGGCGCTTCGCACCC TERM 2201 6280926 - 6280953 + T 100 -22.8 -3.33261 | opp_overlap 6280923 6280926 CAGTTCAACAGAGAA GGCCCCCGAGAG CATG CTCTCGGGGGCC TTCTGGCGCTTCGCA TERM 2202 6280953 - 6280926 - T 100 -22.8 -3.68738 | opp_overlap 6280926, overlap 6280923 CAGTTCAACAGAGAA GGCCCCCGAGAG CATG CTCTCGGGGGCC TTCTGGCGCTTCGCA RHA1_ro05841 6282242 - 6281025 - | acetyl-CoA acetyltransferase TERM 2203 6282263 - 6282293 + r 78 -13.4 -3.52192 | gap 1 CTCCTTTGTCAACTG CGGG-GGTCTGCA CTGTGT TGCAGACCACCCG TTCTGTGGCCTTCCC RHA1_ro05842 6283372 - 6282350 - | hypothetical protein RHA1_ro05843 6283508 - 6284893 + | cystathionine beta-synthase TERM 2204 6284948 - 6284898 - f 100 -23.4 -2.62184 | gap 1, overlap 6284900 CCGGTTCCTAGACGA CACTGGT-CCCCGCTGCGCACGG AACGTA CCGTGCACAGCGGGGTACCGGCG CGGTGTCCGTGAGGG TERM 2205 6284946 - 6284900 - f 100 -22.4 -2.85351 | gap 1, overlap 6284898 GGTTCCTAGACGACA CTGGT-CCCCGCTGCGCACGG AACGTA CCGTGCACAGCGGGGTACCGG CGCGGTGTCCGTGAG RHA1_ro05844 6284973 - 6285503 + | hypothetical protein metB 6285525 - 6286697 + | cystathionine gamma-synthase TERM 2206 6287624 - 6287642 + G 72 -13.8 -3.17212 | CGTGGAGCCTGCGGG CGCGGCCG CGG TGGCCGCG TTGATCAGCTGCTCG RHA1_ro05846 6286773 - 6288005 + | threonine dehydratase RHA1_ro05847 6288782 - 6288012 - | membrane-associated lipoprotein RHA1_ro05848 6288805 - 6289422 + | hypothetical protein TERM 2207 6290168 - 6290207 + G 72 -13.4 -3.14931 | CCGTTACGGCGCGAA CTCGCCGGTGTCCCGGGC AGGG GCCCGCGGTCCCGGCCAG TTCATGCCCCCTGCC RHA1_ro05849 6289569 - 6290918 + | hypothetical protein TERM 2208 6290982 - 6290942 - T 100 -27.8 -2.62184 | opp_overlap 6290947, overlap 6290947 CCGGGCGTCACAGCA GAAAACTCCGGCCCGGGC ACTGG GCCCGGACCGGAGTTTTC GGCGGTGGATCCGAG TERM 2209 6290947 - 6290977 + T 100 -19.7 -4.09864 | opp_overlap 6290942 6290947 CGTCACAGCAGAAAA CTCCGGCCCGGGC ACTGG GCCCGGACCGGAG TTTTCGGCGGTGGAT TERM 2210 6290977 - 6290947 - T 100 -21.9 -4.50976 | opp_overlap 6290947, overlap 6290942 CGTCACAGCAGAAAA CTCCGGCCCGGGC ACTGG GCCCGGACCGGAG TTTTCGGCGGTGGAT greA 6291493 - 6290999 - | transcription elongation factor GreA TERM 2211 6291610 - 6291562 - R 86 -16 -3.20207 | gap 1, opp_overlap 6291576, overlap 6291575 AACAGCAGTGATCAA CGGCTCGGCAGAATTCG-ACGGC CGGG GCCGTTCGATTTCCGCCTTGCCG CCAATGCAGCAATAC TERM 2212 6291649 - 6291623 - R 86 -16 -3.21912 | overlap 6291637 CCGCCAATGCAGCAA TACACGGTTCCA AAC CGGAACCGTGTA CCAGGCGATTCTAGC RHA1_ro05851 6292146 - 6291721 - | hypothetical protein RHA1_ro05852 6292338 - 6293216 + | N-acetylglucosaminylphosphatidylinositol deacetylase RHA1_ro05853 6293213 - 6293533 + | hypothetical protein TERM 2213 6293919 - 6293958 + G 78 -17.2 -2.71144 | gap 1 CGCCCCGTTCTACTG CGGCA-CCTACTACCCGGC CGC GCCGCGTGGTGGGATGCCG TCGTTCACCCAGCTG RHA1_ro05854 6293551 - 6295566 + | hypothetical protein RHA1_ro05855 6296240 - 6295572 - | hemolytic factor TERM 2214 6296269 - 6296292 + H 70 -14 -2.64099 | opp_overlap 6296273, overlap 6296268 TCGCTGTGCGTGGCA CTAACCTACG CAAC CGTAGGTTAG CTTGTGGTGAGAGCG TERM 2215 6296811 - 6296779 - g 74 -14.7 -3.01712 | CCTGCCCGCCGAACA GTCGCGGCGTCTGCG CGA CGCGGCCGCCGGGAC CGAGGGACGCACCGG RHA1_ro05856 6296330 - 6297169 + | di-trans,poly-cis-decaprenylcistransferase coaA 6298143 - 6297211 - | pantothenate kinase RHA1_ro05858 6298313 - 6299533 + | hypothetical protein glyA 6299600 - 6300895 + | serine hydroxymethyltransferase TERM 2216 6301109 - 6301125 + F 75 -15.1 -2.66316 | overlap 6301106 ACACTCAGTGCGAGG GGGCCGG CGC CCGGCCC TCGTGTGGTGACACA RHA1_ro05860 6301204 - 6302571 + | PhoH-like phosphate starvation-induced protein RHA1_ro05861 6303066 - 6302635 - | limonene 1,2-epoxide hydrolase RHA1_ro05862 6304691 - 6303093 - | hypothetical protein RHA1_ro05863 6304848 - 6305705 + | acyl-[acyl-carrier protein] desaturase fumC 6307168 - 6305765 - | fumarate hydratase glpX 6308307 - 6307267 - | fructose 1,6-bisphosphatase II RHA1_ro05866 6308491 - 6309066 + | hypothetical protein RHA1_ro05867 6309311 - 6309081 - | exodeoxyribonuclease VII small subunit xseA 6310571 - 6309315 - | exodeoxyribonuclease VII large subunit TERM 2217 6310425 - 6310401 - G 90 -13.6 -3.99324 | gap 1, opp_overlap 6310401 CCGCAGCACCAGAAA CGCG-GTCCGG GTTC CCGGACGCGCG TTGATCTGGGTGATC TERM 2218 6310401 - 6310425 + g 74 -13.6 -3.28416 | gap 1, opp_overlap 6310401 CCGCAGCACCAGAAA CGCG-GTCCGG GTTC CCGGACGCGCG TTGATCTGGGTGATC RHA1_ro05869 6311347 - 6310568 - | hypothetical protein ispH 6311346 - 6312356 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase RHA1_ro05871 6313227 - 6312385 - | hypothetical protein RHA1_ro05872 6314609 - 6313251 - | RmuC family DNA recombination protein sbcD 6314608 - 6315792 + | ATP-dependent dsDNA exonuclease SbcD TERM 2219 6316136 - 6316124 - g 70 -3.3 -4.46615 | GACCATCAAGGAAAA CGCGA AGG CCACG CTCACCTGGCTCGAC TERM 2220 6318738 - 6318694 - g 81 -18.6 -2.79183 | opp_overlap 6318709, overlap 6318706 GTCACGTCGACGAGA TGCGTCAGCGAATCCCGAGC CGGCT GCACGTGATTCGCGGACGCA CCGGCTCCACCGTGG sbcC 6315789 - 6318770 + | ATP-dependent dsDNA exonuclease SbcC RHA1_ro05875 6319989 - 6318778 - | hypothetical protein TERM 2221 6318830 - 6318878 + g 71 -10.9 -3.56821 | overlap 6318801 6318834 6318854 GTGACGCCCTCCCGT TCGGCGTCGTCGAGGTCGTCGTT CGC GGCGACGGCGTCGGCGATGTTGC TTTCGGCGCTGTGCT TERM 2222 6318834 - 6318874 + g 82 -14.7 -3.51708 | overlap 6318801 6318830 6318854 CGCCCTCCCGTTCGG CGTCGTCGAGGTCGTCGTT CGC GGCGACGGCGTCGGCGATG TTGCTTTCGGCGCTG RHA1_ro05876 6322554 - 6320251 - | carbon starvation protein A TERM 2223 6322614 - 6322624 + r 70 -5.4 -4.37092 | opp_overlap 6322616 GTGACGCCGTCGACA GATG CCA CATC TTTTGTGGCCCCCGT TERM 2224 6322705 - 6322676 - R 83 -2.7 -5.14563 | gap 1, overlap 6322691 GGTTCGACGAAAAAA CGACGTCAGAAGCG AGA CGAATC-GGCGTCG ATCCAGTCGGTGAGC RHA1_ro05877 6324246 - 6322681 - | glutamate synthase (ferredoxin) TERM 2225 6323463 - 6323413 - G 74 -13.2 -3.28712 | gap 1, opp_overlap 6323428 GTTCGGGGTGGAGAA CGCGGTGTGCGAGGGCGGGGAGA TCACCG TCTTCCCGACCG-GCACGCCGCG CGTCTCGGCAATCTC TERM 2226 6324445 - 6324416 - g 72 -14.3 -3.15579 | gap 1 GGAATCGTCGAGCAA CCCGGTGCCGCCGA AGC CCGGCGACAC-GGG TACCTACGGCTACCA RHA1_ro05878 6324378 - 6324791 + | hypothetical protein RHA1_ro05879 6324839 - 6325918 + | translation-associated GTPase RHA1_ro05880 6327308 - 6325908 - | major facilitator superfamily multidrug resistance protein RHA1_ro05881 6327364 - 6327897 + | hypothetical protein RHA1_ro05882 6328758 - 6327910 - | hypothetical protein RHA1_ro05883 6329252 - 6328848 - | hypothetical protein RHA1_ro05884 6329740 - 6329249 - | hypothetical protein RHA1_ro05885 6329797 - 6330846 + | LuxR family transcriptional regulator fusA 6332926 - 6330884 - | elongation factor EF2 TERM 2227 6332150 - 6332117 - G 72 -13.9 -3.19157 | gap 1, overlap 6332108 CACGAAGTCGAGCAA CCGGTCGACGG-CGAT CGC ATCGACCGCCGACCCG CACAGCACCGGCCAC RHA1_ro05887 6333050 - 6333517 + | hypothetical protein RHA1_ro05888 6335169 - 6333514 - | hypothetical protein RHA1_ro05889 6335350 - 6335547 + | hypothetical protein RHA1_ro05890 6335544 - 6335918 + | hypothetical protein RHA1_ro05891 6335985 - 6336197 + | hypothetical protein htpG 6336351 - 6338279 + | heat shock protein 90 TERM 2228 6339087 - 6339107 + G 72 -13.3 -3.15544 | CGCCTGGTGGGCAGG CTGGTCGAC GCC GTCGACCGG TTCGTCCCCATCGAC RHA1_ro05893 6338286 - 6339275 + | oxidoreductase RHA1_ro05894 6339272 - 6339841 + | G/U mismatch-specific DNA glycosylase RHA1_ro05895 6339867 - 6340217 + | hypothetical protein RHA1_ro05896 6341625 - 6340231 - | acyl-CoA dehydrogenase TERM 2229 6342297 - 6342256 - g 81 -4.2 -4.83615 | gap 1, opp_overlap 6342294 6342295, overlap 6342258 6342259 GACGCTCTACAAAAA CATCGCGCGGGCGAACGGT GGTGA ACCGGACGCCGGC-CGCCG CCTGCGGGCCTGGGC RHA1_ro05897 6341756 - 6342622 + | hypothetical protein RHA1_ro05898 6342619 - 6343287 + | hypothetical protein RHA1_ro05899 6345045 - 6343348 - | fumarate hydratase class I TERM 2230 6344372 - 6344390 + g 71 -2.2 -4.66537 | overlap 6344373 TACGGCGGGCAGGCC GCGGTGCC GAG GGCGCGGA TTTTCTCTTCGAGGA RHA1_ro05900 6345223 - 6345993 + | protease RHA1_ro05901 6347247 - 6346003 - | hypothetical protein TERM 2231 6347545 - 6347498 - H 100 -24.2 -3.29461 | gap 1, opp_overlap 6347495 6347499, overlap 6347486 6347499 GAAGGTCGCCGACAA CGCCGTGACGGGGCCCGCGCGCC TGA AGCGTGCGAACCCCGTCACGG-G TGTTCAAGTCTTGTG TERM 2232 6347545 - 6347499 - H 100 -24.4 -2.57463 | opp_overlap 6347495 6347499, overlap 6347486 6347498 AAGGTCGCCGACAAC GCCGTGACGGGGCCCGCGCGCC TGA AGCGTGCGAACCCCGTCACGGG TGTTCAAGTCTTGTG TERM 2233 6347499 - 6347545 + H 100 -21.5 -3.10474 | opp_overlap 6347486 6347498 6347499, overlap 6347495 AAGGTCGCCGACAAC GCCGTGACGGGGCCCGCGCGC CTGAA GCGTGCGAACCCCGTCACGGG TGTTCAAGTCTTGTG RHA1_ro05902 6348014 - 6348535 + | hypothetical protein RHA1_ro05903 6349675 - 6348545 - | oxidoreductase RHA1_ro05904 6349814 - 6351445 + | hypothetical protein RHA1_ro05905 6351451 - 6352845 + | chloride channel transporter TERM 2234 6353265 - 6353232 - g 71 -10.2 -3.6968 | overlap 6353235 6353248 CGAGAACCGCAAGAA GAACGCCGCCCGCA AATCGG CGAAGGCGGCGTCC CGCCGCAACGACGAA TERM 2235 6353262 - 6353235 - g 72 -8.3 -3.97139 | overlap 6353232 6353248 GAACCGCAAGAAGAA CGCCGCCCGCA AATCGG CGAAGGCGGCG TCCCGCCGCAACGAC RHA1_ro05906 6352888 - 6353787 + | Mrr restriction endonuclease RHA1_ro05907 6353953 - 6355161 + | beta-lactamase precursor RHA1_ro05908 6355195 - 6355689 + | hypothetical protein RHA1_ro05909 6355908 - 6356267 + | NADH dehydrogenase subunit A RHA1_ro05910 6356317 - 6356871 + | NADH dehydrogenase subunit B RHA1_ro05911 6357058 - 6357780 + | NADH dehydrogenase subunit C RHA1_ro05912 6357780 - 6359096 + | NADH dehydrogenase subunit D RHA1_ro05913 6359093 - 6360016 + | NADH dehydrogenase subunit E RHA1_ro05914 6360018 - 6361316 + | NADH dehydrogenase subunit F RHA1_ro05915 6361393 - 6363870 + | NADH dehydrogenase subunit G RHA1_ro05916 6363867 - 6365219 + | NADH dehydrogenase subunit H RHA1_ro05917 6365212 - 6365778 + | NADH dehydrogenase subunit I RHA1_ro05918 6365810 - 6366619 + | NADH dehydrogenase subunit J RHA1_ro05919 6366616 - 6366915 + | NADH dehydrogenase subunit K RHA1_ro05920 6366988 - 6368910 + | NADH dehydrogenase subunit L RHA1_ro05921 6368907 - 6370478 + | NADH dehydrogenase subunit M TERM 2236 6371888 - 6371905 + G 79 -2.5 -4.87665 | overlap 6371889 6371890 CTCGTCGGTGTCGTC AGCAGCG CGAT CGCGGCG TTTTTCTACGTCCGC RHA1_ro05922 6370475 - 6372094 + | NADH dehydrogenase subunit N RHA1_ro05923 6372272 - 6372994 + | hypothetical protein RHA1_ro05924 6373502 - 6372999 - | hypothetical protein RHA1_ro05925 6373505 - 6373750 + | hypothetical protein RHA1_ro05926 6373820 - 6374296 + | MarR family transcriptional regulator RHA1_ro05927 6374657 - 6374307 - | hypothetical protein TERM 2237 6374753 - 6374710 - R 100 -20.4 -2.87881 | gap 1, opp_overlap 6374718, overlap 6374713 6374718 GAAGCGGTGCAGACA TGAGTGAAGGGCCCTTCCGGA TCT TCCGG-AGGGCCCTTCGCTCG TCAGCTGTGAAGAGT TERM 2238 6374750 - 6374713 - R 100 -20.7 -2.69151 | gap 1, opp_overlap 6374718, overlap 6374710 6374718 GCGGTGCAGACATGA GTGAAGGGCCCTTCCGGA TCT TCCGG-AGGGCCCTTCGC TCGTCAGCTGTGAAG TERM 2239 6374745 - 6374718 - R 88 -17.8 -3.12606 | gap 1, opp_overlap 6374718, overlap 6374713 6374710 GCAGACATGAGTGAA GGGCCCTTCCGGA TCT TCCGG-AGGGCCC TTCGCTCGTCAGCTG TERM 2240 6374718 - 6374745 + r 88 -17.8 -3.09834 | gap 1, opp_overlap 6374718 6374713 6374710 GCAGACATGAGTGAA GGGCCCTTCCGGA TCT TCCGG-AGGGCCC TTCGCTCGTCAGCTG RHA1_ro05928 6375529 - 6374768 - | hypothetical protein TERM 2241 6376299 - 6376331 + Gr 74 -14.8 -2.62184 | gap 1 TGGTGCTCGGTGACG CCGCGCGCAGCCCGC ACTG GCGGGCGGT-CGCGG TGCTGTGGACCACAG phhB 6377432 - 6377148 - | pterin-4-alpha-carbinolamine dehydratase pimE 6375869 - 6377200 + | mannosyltransferase RHA1_ro05931 6377494 - 6377871 + | MutT/NUDIX hydrolase family protein RHA1_ro05932 6378050 - 6377874 - | hypothetical protein TERM 2242 6377928 - 6377939 + g 72 -5.8 -4.2461 | CTTCTTGGACGCGCC CTCG TTCT CGAG TTTCTTCATGCGCAT TERM 2243 6379255 - 6379285 + G 83 -14.6 -3.5393 | opp_overlap 6379254 6379253 AGCCCGCCGAGAAGG CCGTCGCCGGTGAC ATC GTCGCCGTCGCCGG TTTCCCCGACATCAT RHA1_ro05933 6378384 - 6380291 + | GTP binding elongation factor TERM 2244 6380317 - 6380372 + F 100 -27.2 -2.72461 | gap 1, opp_overlap 6380320 6380321, overlap 6380317 6380321 CGACCACGTCATACA CAACCGGGCGAATGTACCTTCGGTCGA TCG TCGGCCGAAGGTACATTCGCTCG-TGG GTTTCCGGAGCCTTC TERM 2245 6380317 - 6380373 + F 100 -25.3 -3.54459 | opp_overlap 6380320 6380321, overlap 6380317 6380321 CGACCACGTCATACA CAACCGGGCGAATGTACCTTCGGTCGA TCG TCGGCCGAAGGTACATTCGCTCGTGGG TTTCCGGAGCCTTCC TERM 2246 6380370 - 6380320 - f 100 -25.6 -3.59698 | opp_overlap 6380317 6380317 6380321, overlap 6380321 CCACGTCATACACAA CCGGGCGAATGTACCTTCGGTCGA TCG TCGGCCGAAGGTACATTCGCTCGT GGGTTTCCGGAGCCT TERM 2247 6380369 - 6380321 - f 100 -29.1 -2.75498 | opp_overlap 6380317 6380317 6380321, overlap 6380320 CACGTCATACACAAC CGGGCGAATGTACCTTCGGTCGA TCG TCGGCCGAAGGTACATTCGCTCG TGGGTTTCCGGAGCC TERM 2248 6380321 - 6380369 + F 100 -33.5 -2.64155 | opp_overlap 6380321 6380320, overlap 6380317 6380317 CACGTCATACACAAC CGGGCGAATGTACCTTCGGTCGA TCG TCGGCCGAAGGTACATTCGCTCG TGGGTTTCCGGAGCC TERM 2249 6380635 - 6380599 - g 74 -14.4 -3.35679 | gap 1 GTCGCCGACCGAGAA GCAGCCCGTCGTCGTCG CCAT CGACGACGT-GGGCAGC GGATTCAACCCGCAC RHA1_ro05934 6380414 - 6382234 + | hypothetical protein TERM 2250 6382406 - 6382424 + G 71 -11.7 -3.57144 | AGCTGGTCGCCGACG CCGCCGA TCAGC TCGGCGG TTTCCGGATCGGCGA RHA1_ro05935 6382231 - 6383109 + | LMBE-related protein RHA1_ro05936 6383209 - 6383367 + | hypothetical protein RHA1_ro05937 6383382 - 6383810 + | hypothetical protein TERM 2251 6385273 - 6385249 - g 72 -14.3 -3.23447 | overlap 6385247 6385264 GCAACGTCGACAAGA CCCTCGGCGAT CGA ATCGCCGACGG TGTCGGGAAGAAACA RHA1_ro05938 6383841 - 6385358 + | catalase RHA1_ro05939 6385732 - 6385355 - | hypothetical protein RHA1_ro05940 6385733 - 6386614 + | hypothetical protein RHA1_ro05941 6387385 - 6386672 - | hypothetical protein RHA1_ro05942 6388911 - 6387370 - | hypothetical protein RHA1_ro05943 6389435 - 6388908 - | hypothetical protein fbiC 6389724 - 6392351 + | FO synthase RHA1_ro05945 6392348 - 6393115 + | hypothetical protein TERM 2252 6393162 - 6393190 + F 79 -10.9 -3.81951 | GATAATAGTTTCTTC CGCGGGGTACAAG CAG CCCGTACCTCGCG TTTACTCGTGTCAGA RHA1_ro05946 6393224 - 6393547 + | ferredoxin RHA1_ro05947 6393550 - 6394650 + | N-succinyldiaminopimelate aminotransferase TERM 2253 6395557 - 6395529 - g 84 -20.3 -2.90075 | CCGGGGGGAACGAGA CCTCGACGCGGCG GAG CGGCGCGTCGAGG AAGCCCGGCGTGCAG RHA1_ro05948 6394696 - 6395589 + | hypothetical protein RHA1_ro05949 6395639 - 6396052 + | hypothetical protein RHA1_ro05950 6396809 - 6396060 - | hypothetical protein TERM 2254 6396707 - 6396686 - Gf 71 -7.9 -4.07687 | ACCCGCGCGTCAAAA CCGGATGAG TACC CCCGTCCGG CGCTAACCTGGGCTC rocA2 6396808 - 6398448 + | 1-pyrroline-5-carboxylate dehydrogenase RHA1_ro05952 6398445 - 6399422 + | proline dehydrogenase RHA1_ro05953 6399477 - 6400136 + | hypothetical protein TERM 2255 6400881 - 6400914 + G 74 -15.3 -3.02144 | gap 1 TCGGGTGCGCGACTG CTGGTGTCGGGCAGCG CCC CGCTGCCCG-TGCCGG TGTTCGAGAAGCTGC RHA1_ro05954 6400149 - 6401549 + | acyl-CoA synthetase RHA1_ro05955 6401602 - 6402642 + | NADPH:quinone reductase TERM 2256 6403317 - 6403305 - g 73 -10.5 -3.87815 | overlap 6403306 GCTCAGCGGCAGAAA GGCGG CGA CCGCC GCGCGGCACGCGGGT RHA1_ro05956 6402772 - 6404010 + | hypothetical protein TERM 2257 6404038 - 6404062 + F 82 -15.7 -3.07443 | CCGGCCGCCCGCCAC CGGCGCAGCGT CGT ACGCTGCACCG TTCGCTACGATGTGG RHA1_ro05957 6404145 - 6405791 + | hypothetical protein RHA1_ro05958 6405901 - 6408261 + | arylsulfatase, N-terminal RHA1_ro05959 6408275 - 6409204 + | hydrolase RHA1_ro05960 6409311 - 6409724 + | hypothetical protein aroP 6411107 - 6409743 - | aromatic amino acid transport protein AroP dapD 6412092 - 6411139 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase RHA1_ro05963 6412234 - 6413187 + | hypothetical protein TERM 2258 6414252 - 6414227 - g 73 -12.5 -3.494 | GAACCTCGCACACAA GCGGGACGAGC ACGT GCCCGTCCAGC AGATCACCGACGTGA RHA1_ro05964 6413229 - 6414302 + | dipeptidase RHA1_ro05965 6414405 - 6415145 + | hypothetical protein RHA1_ro05966 6415142 - 6415702 + | hypothetical protein RHA1_ro05967 6415787 - 6417562 + | acyl-CoA synthetase TERM 2259 6417571 - 6417626 + F 100 -25 -2.66451 | overlap 6417571 6417576 GGGGTAATGCGGCTA CGCCGCCCGTGAGTACTTCTTAACCG CCCG CCGTTAACAAGTACTCACGGGTGGTG TCGATTTCGCTGCGT TERM 2260 6417576 - 6417621 + F 100 -20.7 -2.68532 | overlap 6417571 6417571 AATGCGGCTACGCCG CCCGTGAGTACTTCTTAACCG CCCG CCGTTAACAAGTACTCACGGG TGGTGTCGATTTCGC RHA1_ro05968 6417656 - 6418555 + | dihydropteroate synthase RHA1_ro05969 6418552 - 6419511 + | hypothetical protein RHA1_ro05970 6419564 - 6419875 + | hypothetical protein RHA1_ro05971 6419872 - 6420447 + | DNA-3-methyladenine glycosylase I RHA1_ro05972 6420598 - 6420765 + | hypothetical protein TERM 2261 6420792 - 6420824 + F 93 -19.2 -3.12351 | gap 1, opp_overlap 6420783 6420782, overlap 6420790 6420799 GAGAACCTCACAGGG CAGGCCCCGTCGCCG TTCT CGGTG-CGGGGCCTG TTCCGTGTCCGGAAC RHA1_ro05973 6420829 - 6421698 + | rRNA (guanine-N(1)-)-methyltransferase RHA1_ro05974 6422928 - 6421708 - | glycosyltransferase TERM 2262 6424142 - 6424102 - g 71 -10.3 -3.7941 | GATCCTCGACAAGAA CGTGGTCGTCGGCGACG GCGAGAT CATCGGCGTCGACCTCG AGCGCGACAAGCAAC glgC 6422999 - 6424213 + | glucose-1-phosphate adenylyltransferase RHA1_ro05976 6424880 - 6424242 - | O-methyltransferase RHA1_ro05977 6425165 - 6425797 + | sigma factor, sigma 70 type, group 4 (ECF) RHA1_ro05978 6425814 - 6426176 + | hypothetical protein RHA1_ro05979 6426271 - 6427794 + | serine protease, C-terminal TERM 2263 6428261 - 6428241 - g 78 -8.2 -4.30719 | overlap 6428242 CCGCCGCAGAACAAA CCGCTCGC GGCGG GCGAGCGC CCCCCGATCGACCTC RHA1_ro05980 6427893 - 6428288 + | sec-independent translocase RHA1_ro05981 6429491 - 6428355 - | ATPase RHA1_ro05982 6430393 - 6429515 - | hypothetical protein RHA1_ro05983 6431850 - 6430687 - | hypothetical protein RHA1_ro05984 6432488 - 6431967 - | hypothetical protein RHA1_ro05985 6433756 - 6432485 - | hypothetical protein TERM 2264 6433325 - 6433348 + g 76 -13.8 -3.53012 | GCGGCGACCGAGTCG GCCGCGGTGC CCGC GCACCGCGAC TTTCGACACCACCCA RHA1_ro05986 6433828 - 6434790 + | citrate (pro-3S)-lyase beta subunit TERM 2265 6434837 - 6434806 - f 88 -16 -3.37796 | CCTCAGCAGGCAGAA TGGTTCTCACAGGA CCGA TCCTGAGAGAACCA CACGAGGAGACCAGC RHA1_ro05987 6434858 - 6435349 + | hypothetical protein RHA1_ro05988 6435495 - 6436964 + | ABC sugar transporter, permease component RHA1_ro05989 6436961 - 6437908 + | ABC sugar transporter, permease component RHA1_ro05990 6437911 - 6438747 + | ABC sugar transporter, permease component RHA1_ro05991 6438785 - 6439954 + | ABC sugar transporter, ATP-binding component RHA1_ro05992 6441459 - 6439924 - | major facilitator superfamily multidrug transporter RHA1_ro05993 6441550 - 6442641 + | hypothetical protein RHA1_ro05994 6443497 - 6442631 - | hypothetical protein RHA1_ro05995 6444182 - 6443487 - | phosphoesterase RHA1_ro05996 6444263 - 6444835 + | hypothetical protein RHA1_ro05997 6445923 - 6444832 - | Mg2+/Co2+ transporter RHA1_ro05998 6446071 - 6446925 + | hypothetical protein RHA1_ro05999 6446922 - 6447281 + | hypothetical protein TERM 2266 6447441 - 6447460 + F 75 -10.6 -3.89501 | ACTCCGACGTCGGCG CCACCGCC CTTC GGCGGGGG TTTATGGCAGTGTTG TERM 2267 6447572 - 6447607 + F 90 -17.1 -3.35679 | opp_overlap 6447576, overlap 6447576 GTTGTCGTTCGTGGA GTAACTGTGAGGATC AGCGCC GATCCTCACGGTTAC TTCTCAGTAACCCGG TERM 2268 6447576 - 6447603 + F 75 -12.1 -3.45945 | opp_overlap 6447576, overlap 6447572 TCGTTCGTGGAGTAA CTGTGAGGATC AGCGCC GATCCTCACGG TTACTTCTCAGTAAC RHA1_ro06000 6447658 - 6448851 + | malate dehydrogenase (oxaloacetate decarboxylating) TERM 2269 6448860 - 6448917 + T 72 -12.8 -3.0792 | gap 1, opp_overlap 6448882, overlap 6448867 6448916 CGGCTAGCGAGAATC CGTCGAGCACCCCGAT-CCAGAACC CGCACCCAC GGTTCCGGTGTCGGGGTGTTTGCCG TTGGGTGACGTGTTC TERM 2270 6448867 - 6448910 + T 74 -11.1 -3.6715 | gap 1, opp_overlap 6448882, overlap 6448860 CGAGAATCCGTCGAG CACCCCGAT-CCAGAACC CGCACCCAC GGTTCCGGTGTCGGGGTG TTTGCCGTTGGGTGA RHA1_ro06001 6449626 - 6448934 - | ABC amino acid transport system, permease protein RHA1_ro06002 6450321 - 6449623 - | ABC amino acid transporter, permease component RHA1_ro06003 6451483 - 6450326 - | ABC amino acid transporter, ATP-binding component RHA1_ro06004 6452468 - 6451494 - | ABC amino acid transporter, substrate binding component RHA1_ro06005 6452525 - 6453553 + | amino acid ABC transporter substrate-binding protein RHA1_ro06006 6454432 - 6453512 - | esterase RHA1_ro06007 6455270 - 6454440 - | short chain dehydrogenase RHA1_ro06008 6456880 - 6455267 - | monooxygenase RHA1_ro06009 6456939 - 6457577 + | TetR family transcriptional regulator TERM 2271 6458292 - 6458270 - g 72 -5.4 -4.42386 | overlap 6458272 TCCGCAGCGAGAAAA CCCGAGCGTC CCT GACGGCCGTG CTGGCGTTCGCCGAC RHA1_ro06010 6457753 - 6458466 + | hypothetical protein RHA1_ro06011 6459195 - 6458479 - | ABC transporter, ATP-binding component TERM 2272 6459183 - 6459130 - G 100 -24.7 -2.88544 | overlap 6459137 GGGCAGGTCCAGATA CCACGAAGCCGGGTCGAATCCGCTC CGTG GAGTGAACTCGACCCGGCTCAGTGG CAGATCAGTCAATCA TERM 2273 6459176 - 6459137 - G 95 -20.8 -3.26545 | overlap 6459130 TCCAGATACCACGAA GCCGGGTCGAATCCGCTC CGTG GAGTGAACTCGACCCGGC TCAGTGGCAGATCAG kgd 6462993 - 6459217 - | alpha-ketoglutarate decarboxylase TERM 2274 6459486 - 6459514 + g 78 -13.2 -3.61089 | overlap 6459481 ACAGCTGCTCGATGC GGACGATCGCGA TGTCC TCGCGGTTGTCC TTCTGCTTCTTCGCC RHA1_ro06013 6467025 - 6463105 - | ABC multidrug resistance transporter RHA1_ro06014 6467816 - 6467037 - | hypothetical protein RHA1_ro06015 6468925 - 6467813 - | ABC transporter, ATP-binding component gadA 6469054 - 6470436 + | glutamate decarboxylase RHA1_ro06017 6471140 - 6470454 - | hypothetical protein TERM 2275 6470889 - 6470877 - G 71 -10.5 -3.71848 | CGCTTCCAGGAAGAA CGCCG ATT CGGCG CCCACCGCCGCGATG TERM 2276 6471065 - 6471087 + g 70 -12 -3.28712 | CGTACTTCGCCACCG CGGGAGCC TGGAGAC GGCTCCCG TTGTCGAGGACCGAG RHA1_ro06018 6471239 - 6472093 + | transcriptional regulator TERM 2277 6472336 - 6472392 + G 74 -15.8 -2.71364 | gap 2 CGGGCTCGGTGTACC TCGT--CGTCGACGACCCCGACGCGCTC CAC GAGCGCGCCGTGGCCGCCGGCGCCACGA TCGTTCGCGGACTGC RHA1_ro06019 6472098 - 6472493 + | hypothetical protein RHA1_ro06020 6473541 - 6472504 - | glutathione S-transferase RHA1_ro06021 6474336 - 6473572 - | acetyltransferase RHA1_ro06022 6474359 - 6474988 + | transcriptional regulator RHA1_ro06023 6474988 - 6476502 + | multidrug efflux transport protein RHA1_ro06024 6477862 - 6476456 - | glyoclate oxidase FAD-linked subunit TERM 2278 6476933 - 6476908 - Gf 73 -14.7 -2.52464 | opp_overlap 6476909 GGCCTGCGGAATCTA TCCCGACGGCG GGTT CGTCGTCGGGA TCGCACTGCTCCAGC RHA1_ro06025 6477861 - 6478667 + | enoyl-CoA hydratase RHA1_ro06026 6478760 - 6479956 + | CoA synthetase add1 6479983 - 6480948 + | adenosine deaminase RHA1_ro06028 6482325 - 6480961 - | amidase RHA1_ro06029 6483652 - 6482336 - | L-gulonolactone oxidase RHA1_ro06030 6483637 - 6484398 + | TetR family transcriptional regulator RHA1_ro06031 6484459 - 6485658 + | hypothetical protein RHA1_ro06032 6489110 - 6485643 - | hypothetical protein TERM 2279 6486319 - 6486265 - G 90 -13.2 -4.00042 | CGCTCGAGGAAATAA CCCCGGCTCGCGGGCAGCGCCCCGTG CCC CTCGGCGAGCCACCCGAGGGCCGACG CGTCCACCGGTTCCG TERM 2280 6487242 - 6487287 + g 73 -13.1 -3.40403 | overlap 6487236 ACGGCCGGTGAGCTG CAGGCGCCGGCGCAGCTTGCG TTGC CGCGGGCTGCTCTTGTGCCAG TTCTCCTCGACGACC RHA1_ro06033 6489180 - 6489812 + | lysophospholipase RHA1_ro06034 6491651 - 6489864 - | long-chain-fatty-acid--CoA ligase RHA1_ro06035 6492495 - 6491791 - | hypothetical protein RHA1_ro06036 6493224 - 6492595 - | phosphoribosyltransferase TERM 2281 6492736 - 6492783 + g 73 -7.7 -4.1552 | gap 3 CAGACGGCCGACGGC CTCGGGCGCCGCCAC-CGGGACCG CGA CGATCACGCGT-GCCGCGCCC-AG TTTCTTCACCGACTG RHA1_ro06037 6494081 - 6493284 - | amidohydrolase, carbon-nitrogen hydrolase family protein RHA1_ro06038 6494191 - 6495951 + | cold-shock DEAD-box protein TERM 2282 6495963 - 6495939 - T 100 -15 -4.79223 | GGACAGCAGGAAAAA GCCGCGCGAG TAGTT CTCACGCGGC CCTCCCGAAGAGGAT RHA1_ro06039 6496620 - 6495988 - | hypothetical protein RHA1_ro06040 6497259 - 6496708 - | hypothetical protein RHA1_ro06041 6497411 - 6499267 + | trehalose synthase RHA1_ro06042 6499264 - 6500667 + | hypothetical protein RHA1_ro06043 6502546 - 6500648 - | bifunctional ABC lipid A transporter RHA1_ro06044 6503250 - 6502648 - | hypothetical protein RHA1_ro06045 6503703 - 6503275 - | hypothetical protein RHA1_ro06046 6505262 - 6503700 - | long-chain-fatty-acid--CoA ligase TERM 2283 6503958 - 6503978 + g 72 -13.3 -3.12351 | overlap 6503947 6503969 CACCTCCGCCACCGC CGGGTGTTC GAC GAGCACCCG TTCGATCTCGGGCGA RHA1_ro06047 6506252 - 6505335 - | hypothetical protein RHA1_ro06048 6506314 - 6507168 + | ABC lipoprotein transporter, ATPase component TERM 2284 6508645 - 6508618 - g 77 -15.6 -3.14132 | opp_overlap 6508630 CCTGGCCCGCACCAA CGCCGTGCGG AATCCGCG CCGCACGGCG GCCACCGCCTTCGCG RHA1_ro06049 6507173 - 6509704 + | ABC lipoprotein transporter, permease component RHA1_ro06050 6509836 - 6511017 + | ferredoxin--NAD(+) reductase RHA1_ro06051 6511050 - 6511823 + | glutamate racemase RHA1_ro06052 6512464 - 6511811 - | transcriptional regulator RHA1_ro06053 6513072 - 6512551 - | hypothetical protein RHA1_ro06054 6513091 - 6513819 + | hypothetical protein RHA1_ro06055 6513846 - 6514442 + | hypothetical protein RHA1_ro06056 6515504 - 6514449 - | reductase TERM 2285 6515658 - 6515673 + H 75 -10.4 -3.85817 | TCGGCCCGGCCGTAC CTGCCC GTTC GGGCAG TTTGTGCGCCGCGGT RHA1_ro06057 6515896 - 6517098 + | 1,3-propanediol dehydrogenase TERM 2286 6517165 - 6517113 - f 90 -15.4 -3.64822 | gap 1, opp_overlap 6517119, overlap 6517114 ACCGCCTCACCGAAA CTCGCGTCCGGGGCGGGAGCCACAC CCCA GCCCGGC-CCCGCCCCGGATGCGTT CCCACCACCACACCG TERM 2287 6517164 - 6517114 - f 93 -18.9 -2.78679 | gap 1, opp_overlap 6517119, overlap 6517113 CCGCCTCACCGAAAC TCGCGTCCGGGGCGGGAGCCACAC CCCA GCCCGGC-CCCGCCCCGGATGCGT TCCCACCACCACACC TERM 2288 6517119 - 6517159 + F 73 -14.8 -2.52464 | gap 1, opp_overlap 6517114 6517113 TCACCGAAACTCGCG TCCGGGGCGGGAGCC ACACCCCAGCCC GGC-CCCGCCCCGGA TGCGTTCCCACCACC RHA1_ro06058 6517206 - 6518312 + | ATP-dependent protease RHA1_ro06059 6518315 - 6519853 + | hypothetical protein RHA1_ro06060 6519963 - 6521180 + | 1,3-propanediol dehydrogenase RHA1_ro06061 6521185 - 6522525 + | sensor kinase, two-component system RHA1_ro06062 6522522 - 6523208 + | response regulator, two-component system RHA1_ro06063 6523279 - 6524214 + | ABC transporter ATP-binding protein RHA1_ro06064 6524211 - 6525875 + | anibiotic ABC transporter efflux pump RHA1_ro06065 6526482 - 6525862 - | hypothetical protein RHA1_ro06066 6526781 - 6526479 - | hypothetical protein RHA1_ro06067 6527458 - 6527003 - | hypothetical protein RHA1_ro06068 6527753 - 6529042 + | hypothetical protein RHA1_ro06069 6529872 - 6529048 - | hypothetical protein RHA1_ro06070 6530534 - 6529911 - | AcrR family transcriptional regulator RHA1_ro06071 6530748 - 6531068 + | hypothetical protein TERM 2289 6531143 - 6531123 - g 78 -13.9 -3.55444 | CCTCCATGCTCGAAA GGCCGTCCG CCC CGGTCGGCC GCCTCGTCGACCAGT TERM 2290 6531304 - 6531320 + G 71 -2.2 -4.60797 | opp_overlap 6531305, overlap 6531305 GTCGATCATCGACGA ACTGCA GCGTA TGCAGG TTTTCTATGTGAACA RHA1_ro06072 6531104 - 6532321 + | coenzyme synthesis protein RHA1_ro06073 6532351 - 6533532 + | FMN-dependent (S)-2-hydroxy-acid oxidase TERM 2291 6533620 - 6533565 - g 95 -23.5 -2.52464 | gap 3, opp_overlap 6533574 6533575 6533577 TGTCTGCGCAACTGA CGGACCC-G-ATCACCCTGGCC-GGACG CCA CGCCCCGGCCAGGGTGCTTCTGGGTCCG CACCCCACCAATCTC TERM 2292 6533574 - 6533609 + G 79 -15.4 -3.35679 | gap 1, opp_overlap 6533565, overlap 6533575 6533577 AACTGACGGACCCGA TCACCCTGGCC-GGACG CCA CGCCCCGGCCAGGGTGC TTCTGGGTCCGCACC TERM 2293 6533575 - 6533608 + G 79 -18.9 -2.61264 | gap 1, opp_overlap 6533565, overlap 6533574 6533577 ACTGACGGACCCGAT CACCCTGGCC-GGACG CCA CGCCCCGGCCAGGGTG CTTCTGGGTCCGCAC TERM 2294 6533577 - 6533606 + G 72 -15.7 -2.8474 | gap 1, opp_overlap 6533565, overlap 6533575 6533574 TGACGGACCCGATCA CCCTGGCC-GGACG CCA CGCCCCGGCCAGGG TGCTTCTGGGTCCGC TERM 2295 6534946 - 6534970 + G 76 -13.5 -3.53012 | GGTAATCCTCGCGAC CGGCAGCAGGC CCC GCCCGTTGCCG TTTCCCGCCAAGGGG RHA1_ro06074 6533549 - 6535513 + | 2,4-dienoyl-CoA reductase RHA1_ro06075 6535522 - 6536334 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2296 6536357 - 6536405 + G 82 -16 -3.28924 | gap 1, overlap 6536359 6536360 CGCGTACCGCCACCT GTTCACCCGATTGCGTCTGGGGC CGCT GACCCTG-CGCAATCGGGTGGTC TTCTCCGCGCACCTC TERM 2297 6536359 - 6536403 + G 85 -17.2 -3.21276 | gap 1, overlap 6536357 6536360 CGTACCGCCACCTGT TCACCCGATTGCGTCTGGGGC CGCT GACCCTG-CGCAATCGGGTGG TCTTCTCCGCGCACC TERM 2298 6536360 - 6536402 + G 79 -18.5 -2.52623 | gap 1, overlap 6536359 6536357 GTACCGCCACCTGTT CACCCGATTGCGTCTGGGGC CGCT GACCCTG-CGCAATCGGGTG GTCTTCTCCGCGCAC RHA1_ro06076 6536331 - 6538292 + | 2,4-dienoyl-CoA reductase RHA1_ro06077 6538333 - 6539055 + | hypothetical protein RHA1_ro06078 6539162 - 6540562 + | glycosyl transferase TERM 2299 6540832 - 6540849 + G 76 -14.1 -3.46647 | overlap 6540830 6540847 6540848 GTCCTCGGTGGTTCG GGCGCCG TCAA CGGCGCC TATTTCGTCCGTGGG RHA1_ro06079 6540562 - 6542034 + | choline dehydrogenase RHA1_ro06080 6542101 - 6543417 + | hypothetical protein RHA1_ro06081 6543493 - 6545016 + | dehydrogenase TERM 2300 6545089 - 6545053 - g 100 -25.1 -3.17194 | opp_overlap 6545049 AGCGCCTGAAGGCAA CCGCCGGGGCGGTGGAG CTT CTCCGCCGCCTCGGCGG TACCCACGGGGCGCT RHA1_ro06082 6545016 - 6545558 + | hypothetical protein RHA1_ro06083 6545714 - 6547168 + | ethanolamine permease, APC superfamily TERM 2301 6547380 - 6547354 - g 70 -13 -3.33815 | opp_overlap 6547335 ACGTTCCTGAACGAA CTCGTCGTTCCC TAC GAGGACGACGAG GTCACGAGGCTCATC eutB 6547165 - 6548577 + | ethanolamine ammonia-lyase heavy chain TERM 2302 6549091 - 6549123 + G 74 -15.5 -2.98823 | TGCTGATCGGGGAGC GGCCGGGGCTGTCGG TGG CCGACAGCGTCGGCG TCTATCTCACGCACC eutC 6548574 - 6549341 + | ethanolamine ammonia-lyase small subunit RHA1_ro06086 6549420 - 6549965 + | hypothetical protein RHA1_ro06087 6550087 - 6551427 + | major facilitator transporter RHA1_ro06088 6551589 - 6553226 + | acyl-CoA synthetase RHA1_ro06089 6553733 - 6553236 - | ankyrin repeat-containing protein TERM 2303 6553394 - 6553437 + g 72 -13.7 -3.14132 | opp_overlap 6553397 AGCCGTCGCCGTAGA CCACGGCCTCGAGCAGGGC CGTCCA GCCCGGCTCGTTGACGTGG TTGATCGGCACGCCG TERM 2304 6553666 - 6553710 + g 74 -15 -3.09492 | gap 2 GCGTCGATCAGCGTC CGCGC-G-GCGGCGACGTCGTC ACG GACGACGGCGTCGAACAGCGCG TGTTCCAGTTCGGGC RHA1_ro06090 6554423 - 6553746 - | hypothetical protein RHA1_ro06091 6554494 - 6555696 + | sensor kinase, two-component system RHA1_ro06092 6555693 - 6556319 + | response regulator, two-component system TERM 2305 6556328 - 6556354 + F 71 -7.3 -4.0896 | gap 1 TCGCTGAACCGAGGG GGTTCACAGCGG TACG CCGCA-TGAACC TTTTGGCAACGATTT RHA1_ro06093 6556468 - 6556737 + | hypothetical protein TERM 2306 6556763 - 6556789 + T 90 -16.5 -3.33261 | opp_overlap 6556763 GCACTGGCACGAGAA GGGCCCCGGCC GGTCA GGGCGGGGCCC TTCTGCGGCTTCGCC TERM 2307 6556789 - 6556763 - T 90 -16.5 -3.41051 | opp_overlap 6556763 GCACTGGCACGAGAA GGGCCCCGGCC GGTCA GGGCGGGGCCC TTCTGCGGCTTCGCC RHA1_ro06094 6557483 - 6556845 - | TetR family transcriptional regulator RHA1_ro06095 6557566 - 6559155 + | fatty acid CoA carboxylase B subunit TERM 2308 6560529 - 6560569 + G 71 -10.9 -3.63895 | overlap 6560565 CTCGAGGACTTCGTC GCCGCGGAGGCCACCGACG CCG CCCTGGTCGCCGCTGCGGC TTTCCGCTGGTTGCA accC1 6559161 - 6561179 + | acetyl-CoA carboxylase biotin carboxylase subunit RHA1_ro06097 6561176 - 6562336 + | fatty acid CoA dehydrogenase RHA1_ro06098 6562333 - 6562818 + | MaoC protein RHA1_ro06099 6562815 - 6563660 + | citrate (pro-3S)-lyase TERM 2309 6563690 - 6563670 - f 81 -14 -3.54424 | CGGTAGGCGGCGAAA GAGCGCGG AACTG CCGCGCTC TCGGGGAAGATGGTG RHA1_ro06100 6563709 - 6565652 + | acetoacetyl-CoA synthetase RHA1_ro06101 6566178 - 6566501 + | hypothetical protein RHA1_ro06102 6566523 - 6566774 + | hypothetical protein TERM 2310 6568253 - 6568291 + G 74 -12.3 -3.61398 | gap 1, opp_overlap 6568226 GTGACCGGGTGGAAC GGCGACGTCGTGACCCCG CCGG CGGGGAC-CGTCGTCGAC TTGTTCGACGCCCAG TERM 2311 6583222 - 6583241 + G 73 -12.8 -3.48276 | overlap 6583197 TTTCGCCGACACGTT CGCCGGTG TCCT CGCCGGCG TTATCTCCGACGCGA TERM 2312 6584034 - 6584044 + G 82 -8.2 -4.41548 | opp_overlap 6584032, overlap 6584030 CCGTTTTAAGTCAGA CGCC GTC GGCG TTTTATCAACTGTCC TERM 2313 6584915 - 6584941 + G 85 -16.6 -3.59979 | overlap 6584918 GAAGTTCTCGGCGTC GAACGCGTCGGC ACC GCCGACTCGTTC TTTGACCTCGGCGGA TERM 2314 6584918 - 6584938 + G 81 -12.5 -3.9392 | overlap 6584915 GTTCTCGGCGTCGAA CGCGTCGGC ACC GCCGACTCG TTCTTTGACCTCGGC TERM 2315 6598473 - 6598444 - g 72 -14.3 -3.21747 | gap 1 CGAGGTGACCATCAA CTCGACGGC-CCAC GTG GTGGAGCCGTCGGG AACGGCGACGATCGC TERM 2316 6598615 - 6598639 + G 72 -14.3 -3.14132 | opp_overlap 6598617 TCGCGGATACGTCAA CAGTTCCGCAC TGA GTGCGGAACGG TTCGTCGCGAACCCG TERM 2317 6598637 - 6598617 - g 74 -15.5 -3.07962 | opp_overlap 6598615 GCGGATACGTCAACA GTTCCGCAC TGA GTGCGGAAC GGTTCGTCGCGAACC RHA1_ro06103 6566978 - 6600754 + | non-ribosomal peptide synthetase TERM 2318 6600756 - 6600810 + T 93 -17.9 -3.65351 | gap 2, overlap 6600757 6600759 GATCCGGGCGCTGAT C-TCCGCGGCC-CGTGGTGGGGAGGCT CCG AGCCTTCCCACCACGTGGCCCCGTCTG TTTCCGTCGCCGTGG TERM 2319 6600757 - 6600808 + T 100 -21.6 -3.40775 | gap 1, overlap 6600756 6600759 ATCCGGGCGCTGATC TCCGCGGCC-CGTGGTGGGGAGGCT CCG AGCCTTCCCACCACGTGGCCCCGTC TGTTTCCGTCGCCGT TERM 2320 6600759 - 6600806 + T 100 -28.6 -3.27408 | gap 1, overlap 6600757 6600756 CCGGGCGCTGATCTC CGCGGCC-CGTGGTGGGGAGGCT CCG AGCCTTCCCACCACGTGGCCCCG TCTGTTTCCGTCGCC RHA1_ro06104 6601787 - 6600828 - | hypothetical protein tryA 6602716 - 6601784 - | bifunctional chorismate mutase/ prephenate dehydrogenase RHA1_ro06106 6604785 - 6602713 - | bifunctional anthranilate synthase component I/ II RHA1_ro06107 6605222 - 6604785 - | chorismate mutase RHA1_ro06108 6605453 - 6606388 + | lipase RHA1_ro06109 6607111 - 6606416 - | GntR family transcriptional regulator TERM 2321 6606695 - 6606731 + g 71 -10.8 -3.54029 | gap 2 CTCGAGATCCTCGAT GCGGCCTGCGTCGCCGTC CTC GACGGCG-CGCCG-CAGC TTCTCGTTGATCGCG RHA1_ro06110 6608301 - 6607159 - | acyl-CoA dehydrogenase RHA1_ro06111 6608457 - 6609989 + | aldehyde dehydrogenase TERM 2322 6610049 - 6610030 - g 84 -16.4 -3.39449 | GCTGATGAAGACCAA GCGCGCCG ACAG CGGCGCGC CGGGCGGGATTCCGC RHA1_ro06112 6610013 - 6610945 + | hypothetical protein RHA1_ro06113 6612223 - 6610985 - | transcriptional regulator TERM 2323 6611150 - 6611207 + g 83 -14.9 -3.62522 | gap 1, overlap 6611153 GCGCACGGTGGTCAC CAGGTGGACCCA-CTCCTCGACGTGTAG GCG CTGCACGTTGCGGAGATTGGTCCGCTCG TTCTTCGGGAGATTC TERM 2324 6611153 - 6611204 + g 80 -17.4 -2.93073 | gap 1, overlap 6611150 CACGGTGGTCACCAG GTGGACCCA-CTCCTCGACGTGTAG GCG CTGCACGTTGCGGAGATTGGTCCGC TCGTTCTTCGGGAGA RHA1_ro06114 6612497 - 6612252 - | hypothetical protein RHA1_ro06115 6612496 - 6613731 + | acetyl-CoA acetyltransferase TERM 2325 6615212 - 6615173 - g 70 -13 -3.33737 | CATCAAGGGCGAGAA GACCAGCGACGA-CGCGC TCGGAC GCGCGCTCGCCG-TGGTC CGGCAGATCGGCAAG fadB2 6613752 - 6615926 + | fatty oxidation complex alpha subunit RHA1_ro06117 6615928 - 6616917 + | 2-nitropropane dioxygenase RHA1_ro06118 6616914 - 6617705 + | enoyl-CoA hydratase RHA1_ro06119 6617832 - 6619424 + | acyl-CoA synthetase RHA1_ro06120 6619489 - 6620298 + | ABC transporter membrane protein RHA1_ro06121 6620298 - 6621158 + | hypothetical protein RHA1_ro06122 6621158 - 6622210 + | MCE family protein RHA1_ro06123 6622207 - 6624261 + | MCE family protein RHA1_ro06124 6624258 - 6625349 + | hypothetical protein RHA1_ro06125 6625346 - 6626395 + | MCE family protein RHA1_ro06126 6626392 - 6627579 + | hypothetical protein RHA1_ro06127 6627610 - 6627987 + | hypothetical protein RHA1_ro06128 6628855 - 6628007 - | ABC drug resistance transporter, permease component RHA1_ro06129 6629667 - 6628852 - | ABC drug resistance transporter, transmembrane protein RHA1_ro06130 6630632 - 6629664 - | ABC drug resistance transporter, ATP-binding protein TERM 2326 6630466 - 6630441 - G 77 -14.7 -3.14132 | gap 1 GTGTCCGGCTACGAA CGC-GCGGCCCG CAT CGGGCCGCAGCA GAGTGGACAGCACGT RHA1_ro06131 6631397 - 6630921 - | hypothetical protein rpsJ 6631864 - 6632169 + | 30S ribosomal protein S10 rplC 6632190 - 6632846 + | 50S ribosomal protein L3 rplD 6632843 - 6633532 + | 50S ribosomal protein L4 rplW 6633529 - 6633834 + | 50S ribosomal protein L23 rplB 6633875 - 6634711 + | 50S ribosomal protein L2 rpsS 6634725 - 6635006 + | 30S ribosomal protein S19 rplV 6635003 - 6635407 + | 50S ribosomal protein L22 rpsC 6635407 - 6636213 + | 30S ribosomal protein S3 rplP 6636217 - 6636633 + | 50S ribosomal protein L16 rpmC 6636633 - 6636869 + | 50S ribosomal protein L29 rpsQ 6636866 - 6637147 + | 30S ribosomal protein S17 TERM 2327 6637174 - 6637214 + F 100 -23.4 -3.28712 | opp_overlap 6637164, overlap 6637175 ATGTATCCAGTACGA TGGTGGGGTTGCCTTGCG GCAGA CGCACGGCAACCCCACCG TTGTGCCGCCCACCC TERM 2328 6637175 - 6637213 + F 100 -24.7 -2.57132 | opp_overlap 6637164, overlap 6637174 TGTATCCAGTACGAT GGTGGGGTTGCCTTGCG GCAGA CGCACGGCAACCCCACC GTTGTGCCGCCCACC rplN 6637318 - 6637686 + | 50S ribosomal protein L14 rplX 6637686 - 6638003 + | 50S ribosomal protein L24 rplE 6638005 - 6638571 + | 50S ribosomal protein L5 rpsN 6638576 - 6638761 + | 30S ribosomal protein S14 rpsH 6638910 - 6639308 + | 30S ribosomal protein S8 rplF 6639323 - 6639862 + | 50S ribosomal protein L6 TERM 2329 6639908 - 6639888 - g 95 -14.7 -4.14056 | ACTGCAAACCAGAAA GCCAAGCGG ATT CCGCTCGGC AAGGATGCGTCCACG rplR 6639864 - 6640271 + | 50S ribosomal protein L18 rpsE 6640309 - 6640965 + | 30S ribosomal protein S5 rpmD 6640965 - 6641144 + | 50S ribosomal protein L30 rplO 6641147 - 6641590 + | 50S ribosomal protein L15 TERM 2330 6641647 - 6641613 - f 100 -24.5 -2.80816 | opp_overlap 6641613 CCGCTAGCCAGTAGA TGGCCGCAGTACAGC CTCGC GCTGTACTGCGGCCA TTTGCGGCTGTACGG TERM 2331 6641613 - 6641647 + F 100 -24.5 -3.59262 | opp_overlap 6641613 CCGCTAGCCAGTAGA TGGCCGCAGTACAGC CTCGC GCTGTACTGCGGCCA TTTGCGGCTGTACGG secY 6641781 - 6643094 + | preprotein translocase subunit SecY adk 6643091 - 6643636 + | adenylate kinase TERM 2332 6643892 - 6643930 + G 73 -16.1 -2.64735 | gap 1, overlap 6643878 ATCGTGTGGTGCACG GGATTCCCTCGGCG-GAA GACA TTCTCGCCGAGGGAGACC TCGTCTCCATCGACT RHA1_ro06155 6643636 - 6644433 + | methionine aminopeptidase RHA1_ro06156 6644896 - 6644459 - | D-tyrosyl-tRNA deacylase infA 6645160 - 6645381 + | translation initiation factor IF-1 rpmJ 6645468 - 6645581 + | 50S ribosomal protein L36 rpsM 6645803 - 6646177 + | 30S ribosomal protein S13 rpsK 6646177 - 6646590 + | 30S ribosomal protein S11 rpsD 6646613 - 6647218 + | 30S ribosomal protein S4 TERM 2333 6647222 - 6647280 + F 100 -25.5 -2.65532 | gap 1, opp_overlap 6647265, overlap 6647272 TACTCGAAGTAGGCC TGACG-GCTCGTGCGCCTTTCCGGTAGT TCCG ACTACCGGAAAGGCGCACGGGCACGAAG TGCCTTTCCCATCGT rpoA 6647336 - 6648397 + | DNA-directed RNA polymerase subunit alpha rplQ 6648425 - 6648994 + | 50S ribosomal protein L17 TERM 2334 6649060 - 6649026 - g 93 -21.4 -3.17901 | opp_overlap 6649026 6649053 ACACGCTGAATCGAA CGAGCCCGTCGTCCCC CCG AGGGACGGCGGGCCCG TTTCGTATGGGACCC TERM 2335 6649026 - 6649060 + G 100 -20.7 -3.83026 | opp_overlap 6649026, overlap 6649053 ACACGCTGAATCGAA CGAGCCCGTCGTCCC CCCGA GGGACGGCGGGCCCG TTTCGTATGGGACCC RHA1_ro06164 6649000 - 6649893 + | pseudouridylate synthase RHA1_ro06165 6651892 - 6649943 - | hypothetical protein TERM 2336 6654167 - 6654113 - g 78 -8.3 -4.3739 | gap 2, overlap 6654114 CATCGCGCGACAAAA CCGGTCCGACCCCGAGCAGGCCCCGGC ATC GCCGGGTCC-GC-CGCAGCCTGCCCGC CGTGACGCCGCGGTT TERM 2337 6654333 - 6654283 - g 72 -15.5 -2.87931 | gap 1 GGTAGCCGTGACACA CGTCCATCTCAGGC-GCCCGCCAC ACCA GTGGCAGACAGTCCGAGATGTACG TAGACGCTACGTCAA RHA1_ro06166 6652546 - 6654336 + | hypothetical protein TERM 2338 6654431 - 6654455 + T 100 -20.1 -2.85351 | CGCGTGACAGGTCGA GTGCCCCAGCA TTT TGCTGGGGCAC TGTCGTCTCGGACGA RHA1_ro06167 6654935 - 6654483 - | AsnC family transcriptional regulator RHA1_ro06168 6655017 - 6655934 + | hypothetical protein rocD 6655941 - 6657167 + | ornithine--oxo-acid transaminase rplM 6657336 - 6657779 + | 50S ribosomal protein L13 rpsI 6657776 - 6658312 + | 30S ribosomal protein S9 TERM 2339 6658316 - 6658351 + G 73 -16.3 -2.63073 | overlap 6658313 6658316 6658345 TCGAAGCGCTGATGT GTCGCCGAAGCCG-CCC TCCG GGGTCGGCTTCGGC-AC CTGTTCTTCCCGAGA TERM 2340 6658316 - 6658352 + G 74 -14.4 -3.38812 | gap 1, overlap 6658316 6658313 6658345 TCGAAGCGCTGATGT GTCGCCGAAGCCG-CCC TCCG GGGTCGGCTTCGGCACC TGTTCTTCCCGAGAG TERM 2341 6658359 - 6658403 + G 100 -17.2 -3.87373 | opp_overlap 6658370, overlap 6658345 6658362 TTCGGCACCTGTTCT TCCCGAGAGCAGGCGTCC ATCGTTACC GGACGCCTGCTCTCGTGC TTTATCCGAGATGTA TERM 2342 6658362 - 6658400 + G 91 -21.9 -3.01125 | opp_overlap 6658370, overlap 6658345 6658359 GGCACCTGTTCTTCC CGAGAGCAGGCGTCC ATCGTTACC GGACGCCTGCTCTCG TGCTTTATCCGAGAT RHA1_ro06172 6658312 - 6658419 + | 30S ribosomal subunit RHA1_ro06173 6658450 - 6659787 + | phosphoglucosamine mutase RHA1_ro06174 6660079 - 6659870 - | hypothetical protein TERM 2343 6660679 - 6660633 - gRH 89 -16.5 -3.26545 | gap 1, overlap 6660626 GCCAGAGACGAGGAA GCCGCGGCGAACC-GGTCCGGC CGTA GCCGGACCTAGCCTGCAGCGGC ATCACCCGCTGCTGC RHA1_ro06175 6660078 - 6660668 + | hypothetical protein RHA1_ro06176 6661697 - 6660762 - | hypothetical protein glmS 6661696 - 6663558 + | D-fructose-6-phosphate amidotransferase TERM 2344 6663603 - 6663562 - TfRH 100 -22.3 -3.94877 | gap 1, overlap 6663565 ACCGTCGAATAACAA CCACCGTAGGGGCGTGGCCG GGC CGGCTGCGCCCCTACGG-GG TGACGACGACGGTGC TERM 2345 6663601 - 6663565 - TfRH 100 -23.7 -3.03309 | overlap 6663562 GTCGAATAACAACCA CCGTAGGGGCGTGGCCG GGC CGGCTGCGCCCCTACGG GGTGACGACGACGGT RHA1_ro06178 6664024 - 6663596 - | copper-binding protein RHA1_ro06179 6664023 - 6665504 + | hypothetical protein TERM 2346 6665677 - 6665641 - g 73 -12.2 -3.50393 | gap 1 CGCGATCGCACACAA CGTCCGCATCCTGCGCG ACAG CGCCCGGGACGCGG-CG ATGATGGCCGTCGTG TERM 2347 6666559 - 6666587 + G 70 -13.1 -3.38812 | overlap 6666557 TCTCGGACCGGACGG CGGCGGAGTCC GGGAGGG GGACACCGCCG TGTTCTTCGGCAACG alr 6665522 - 6666724 + | alanine racemase RHA1_ro06181 6666728 - 6667792 + | hydrolase RHA1_ro06182 6667782 - 6668270 + | hypothetical protein RHA1_ro06183 6668299 - 6668979 + | hypothetical protein RHA1_ro06184 6668976 - 6669455 + | acetyltransferase RHA1_ro06185 6669452 - 6670489 + | O-sialoglycoprotein endopeptidase RHA1_ro06186 6672086 - 6670482 - | hypothetical protein TERM 2348 6672219 - 6672205 - H 75 -2.8 -4.83243 | GTTACAGAAAACAAA CGGA TTTCGCT TCCG ACTTTCGGCCGCACA RHA1_ro06187 6672292 - 6672828 + | hypothetical protein TERM 2349 6672811 - 6672844 + T 70 -13.7 -2.53911 | overlap 6672798 GCCGTCGGCTGGGCC CGCAGGCGCCGGGTC TAGC GACCCGACGCCAGCA TCAGTTCGACGTTCC RHA1_ro06188 6674606 - 6672825 - | hypothetical protein RHA1_ro06189 6674774 - 6675073 + | 10 kDa chaperonin TERM 2350 6675084 - 6675120 + F 77 -15.8 -2.52543 | opp_overlap 6675078 6675074 AGTAAGCCATACGTG ATCCGCCCCGGAGTCC CCACA GGATCCCGGGGCGGAG TGCGTTCACGCGCGT groEL 6675166 - 6676779 + | chaperonin GroEL TERM 2351 6676822 - 6676855 + T 100 -24.7 -3.48276 | opp_overlap 6676822 6676826, overlap 6676826 GACTGTTCGAGCGAA GAAACCCCCGTGCGG ATCA CCGCGCGGGGGTTTC TTCTGTCGGCAGGCG TERM 2352 6676855 - 6676822 - T 100 -22.5 -3.05596 | opp_overlap 6676822 6676826, overlap 6676826 GACTGTTCGAGCGAA GAAACCCCCGTGCGG ATCA CCGCGCGGGGGTTTC TTCTGTCGGCAGGCG TERM 2353 6676826 - 6676851 + T 100 -19.7 -4.38927 | opp_overlap 6676822 6676826, overlap 6676822 GTTCGAGCGAAGAAA CCCCCGTGCGG ATCA CCGCGCGGGGG TTTCTTCTGTCGGCA TERM 2354 6676851 - 6676826 - T 100 -17.5 -4.20516 | opp_overlap 6676826 6676822, overlap 6676822 GTTCGAGCGAAGAAA CCCCCGTGCGG ATCA CCGCGCGGGGG TTTCTTCTGTCGGCA RHA1_ro06191 6677595 - 6676876 - | hypothetical protein RHA1_ro06192 6678280 - 6677597 - | RNA polymerase sigma factor SigK RHA1_ro06193 6678697 - 6678404 - | WhiB family transcriptional regulator RHA1_ro06194 6678939 - 6679961 + | transcriptional regulator RHA1_ro06195 6679996 - 6680829 + | hypothetical protein RHA1_ro06196 6680989 - 6681567 + | RNA polymerase sigma factor SigD TERM 2355 6681623 - 6681654 + G 71 -10.1 -3.72695 | gap 1, opp_overlap 6681613 6681616 GGAGACGACGCACCG GTGAACGTCGCGGC AGTGC GCCGCGACGA-CGC TTTGATCGACGCGAT RHA1_ro06197 6681551 - 6682570 + | hypothetical protein TERM 2356 6682587 - 6682645 + T 100 -30.7 -3.30124 | gap 2, opp_overlap 6682596, overlap 6682587 6682594 6682596 GGTTCGGCGGCCCTC -CCG-CACAGACCACTGTGGCCCGACACT TCG AGTGTCGGGCCACAGTGGTCTGTATCGGG TTGTGCCGGATCAGG TERM 2357 6682587 - 6682644 + T 100 -36.7 -2.57931 | gap 1, opp_overlap 6682596, overlap 6682587 6682594 6682596 GGTTCGGCGGCCCTC CCG-CACAGACCACTGTGGCCCGACACT TCG AGTGTCGGGCCACAGTGGTCTGTATCGG GTTGTGCCGGATCAG TERM 2358 6682594 - 6682636 + T 100 -35.2 -2.92653 | opp_overlap 6682596, overlap 6682587 6682587 6682596 CGGCCCTCCCGCACA GACCACTGTGGCCCGACACT TCG AGTGTCGGGCCACAGTGGTC TGTATCGGGTTGTGC TERM 2359 6682634 - 6682596 - T 100 -32 -2.87132 | opp_overlap 6682596 6682594 6682587 6682587 GCCCTCCCGCACAGA CCACTGTGGCCCGACACT TCG AGTGTCGGGCCACAGTGG TCTGTATCGGGTTGT TERM 2360 6682596 - 6682634 + T 100 -32 -3.01261 | opp_overlap 6682596, overlap 6682594 6682587 6682587 GCCCTCCCGCACAGA CCACTGTGGCCCGACACT TCG AGTGTCGGGCCACAGTGG TCTGTATCGGGTTGT RHA1_ro06198 6683060 - 6682656 - | hypothetical protein guaB1 6683304 - 6684827 + | inositol-5-monophosphate dehydrogenase RHA1_ro06200 6684861 - 6686000 + | inositol-5-monophosphate dehydrogenase TERM 2361 6686026 - 6686082 + F 100 -29.7 -2.64981 | overlap 6686047 CGTCGCCGCTTCTCT CGTCGCCCAATGTCACATCGGTGCAGT TCA ACTGCATTGGTGAGGCATTGGGCGACG TGCGTTTGCGGGTAT choD 6686210 - 6687952 + | cholesterol oxidase guaA 6688017 - 6689588 + | bifunctional GMP synthase/glutamine amidotransferase protein RHA1_ro06203 6689891 - 6689649 - | hypothetical protein RHA1_ro06204 6691341 - 6689869 - | hypothetical protein TERM 2362 6690403 - 6690382 - G 70 -12.9 -3.35679 | overlap 6690358 GGTGGCGACCGACAA CGCGGTCGC CGCC GCGGCCGCG AGGATCGCCAACCCG RHA1_ro06205 6691410 - 6692792 + | sensor kinase RHA1_ro06206 6692930 - 6693451 + | hypothetical protein RHA1_ro06207 6693448 - 6693762 + | hypothetical protein RHA1_ro06208 6693762 - 6694607 + | hypothetical protein RHA1_ro06209 6694670 - 6695047 + | hypothetical protein RHA1_ro06210 6695087 - 6695746 + | response regulator RHA1_ro06211 6696970 - 6695759 - | protein kinase RHA1_ro06212 6697146 - 6698021 + | hypothetical protein RHA1_ro06213 6698018 - 6699571 + | DNA-directed DNA polymerase RHA1_ro06214 6699564 - 6700166 + | reductase RHA1_ro06215 6700311 - 6700694 + | hypothetical protein RHA1_ro06216 6700723 - 6701508 + | hydrolase RHA1_ro06217 6701661 - 6702635 + | ribonucleotide-diphosphate reductase subunit beta RHA1_ro06218 6702672 - 6703184 + | hypothetical protein RHA1_ro06219 6703195 - 6703773 + | hypothetical protein RHA1_ro06220 6703803 - 6704681 + | hypothetical protein RHA1_ro06221 6706681 - 6704687 - | short chain dehydrogenase RHA1_ro06222 6708834 - 6706714 - | hypothetical protein TERM 2363 6708415 - 6708466 + g 77 -15 -3.17212 | gap 1, overlap 6708416 CAGCAGGTCGTCGAA CGTGGCGGCCGTGATC-CCGGCGTC CGG GTCGACGGTGATCGCGGCCGACGCC TTGGTGCCGTCCTCC TERM 2364 6708416 - 6708465 + g 79 -18.5 -2.50113 | gap 1, overlap 6708415 AGCAGGTCGTCGAAC GTGGCGGCCGTGATC-CCGGCGTC CGG GTCGACGGTGATCGCGGCCGACGC CTTGGTGCCGTCCTC TERM 2365 6709055 - 6709069 + H 72 -6.4 -4.32436 | CGATTACCCGGCGTG GGGTGT GCG ACATCC TTTTCGTCGTGGTCT TERM 2366 6709092 - 6709129 + H 77 -14.9 -2.79574 | gap 1, opp_overlap 6709090, overlap 6709095 6709100 6709128 CGTGGTCTACGAAGC GGAGTCCTGCAGGCGCCG CAC CGGCGTCTGCTG-ACTTC TCATTCGTGGCTCTG TERM 2367 6709095 - 6709126 + H 78 -13 -3.54297 | gap 1, opp_overlap 6709090, overlap 6709092 6709100 GGTCTACGAAGCGGA GTCCTGCAGGCGCCG CAC CGGCGTCTGCTG-AC TTCTCATTCGTGGCT TERM 2368 6709100 - 6709122 + H 81 -17 -2.63614 | opp_overlap 6709090, overlap 6709095 6709092 ACGAAGCGGAGTCCT GCAGGCGCCG CAC CGGCGTCTGC TGACTTCTCATTCGT RHA1_ro06223 6709163 - 6710155 + | iron ABC transporter substrate-binding component RHA1_ro06224 6710152 - 6711240 + | ABC iron transporter, permease component RHA1_ro06225 6711237 - 6712013 + | ABC Fe(3+)-transporter, ATP-binding component RHA1_ro06226 6712006 - 6712749 + | hypothetical protein dnaE2 6712893 - 6716147 + | error-prone DNA polymerase RHA1_ro06228 6716186 - 6717064 + | hypothetical protein RHA1_ro06229 6717061 - 6717369 + | rhodanese-related sulfurtransferase RHA1_ro06230 6718461 - 6717391 - | hypothetical protein TERM 2369 6718375 - 6718338 - G 74 -14.2 -3.25896 | overlap 6718336 CGATCAGCCAGAAGA TCTCGGC-GGCCGTCCGG GCCA CCGGACCGCCTGCCG-GA AATGCCGCGGCGACG RHA1_ro06231 6718530 - 6719474 + | LysR family transcriptional regulator RHA1_ro06232 6719910 - 6719455 - | tRNA/rRNA methyltransferase RHA1_ro06233 6719966 - 6720571 + | hypothetical protein TERM 2370 6721033 - 6721010 - g 75 -8.8 -4.15044 | gap 1 GTGCTGGGCAAGAAA GCGCCGC-TGC CGT GCACGCCGCGC GGAATCCTGCACCTG TERM 2371 6721324 - 6721363 + G 70 -12.9 -3.25823 | CACCGCGGACGGGCT GCGCGGCGACGT-GGCGGC GGAT GTCGCCGAGGTCGCCG-GC TTCCTGTCCCCGAAC folD 6720605 - 6721465 + | methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase RHA1_ro06235 6721467 - 6721751 + | hypothetical protein TERM 2372 6721733 - 6721764 + T 87 -18.1 -2.78384 | gap 1, overlap 6721752 GGCCGTGTCGATCGA CCCGCTCGGAACCG ACTAG CGGT-CCGAGCGGG TGTCGTCCCGCACGG metX 6722901 - 6721783 - | homoserine O-acetyltransferase RHA1_ro06237 6724187 - 6722904 - | O-acetylhomoserine aminocarboxypropyltransferase TERM 2373 6724627 - 6724615 - H 71 -7.7 -4.09685 | overlap 6724620 GTTTACGTTTGAAAA GCGAA CCG TTCGC GGACCCACTCACAAA TERM 2374 6725626 - 6725599 - g 71 -11.2 -3.6502 | opp_overlap 6725617, overlap 6725601 GACCCCGGACGGAAA GACGTGTGAGGC CGAG GCCGCACACGGC ACCGTGACGCGTCAC TERM 2375 6725624 - 6725601 - g 73 -12.4 -3.40597 | opp_overlap 6725617, overlap 6725599 CCCCGGACGGAAAGA CGTGTGAGGC CGAG GCCGCACACG GCACCGTGACGCGTC RHA1_ro06238 6724697 - 6725920 + | isocitrate dehydrogenase RHA1_ro06239 6726119 - 6727342 + | major facilitator superfamily sugar transporter TERM 2376 6727527 - 6727490 - g 83 -19.9 -2.78384 | gap 1 TGTGTCTGCAGGAGA CGCGGGCGTC-CGACGAG CAG CTCGCCGAGACGCTCGCG CCCGCTCTGGAGGGC RHA1_ro06240 6727378 - 6728184 + | DNA-(apurinic or apyrimidinic site) lyase TERM 2377 6728465 - 6728431 - g 74 -16.4 -2.74012 | GCAGGACCCGAAGGA GCTGCGCCGTCGCA CGAAGAT CGCGGCGGCGCAGC TGCTGGCGCTCGGAA trpS 6728237 - 6729271 + | tryptophanyl-tRNA synthetase RHA1_ro06242 6729277 - 6730299 + | tRNA-processing ribonuclease BN RHA1_ro06243 6731613 - 6730318 - | serine-type D-Ala-D-Ala carboxypeptidase TERM 2378 6730387 - 6730411 + g 79 -15.7 -3.31792 | CGTCCCCACGATCCC CACACCCGCCC GCA GGGCGAGTGTG TTGTGGGGGTGGTCG TERM 2379 6731216 - 6731242 + g 74 -13.7 -3.34398 | gap 1, opp_overlap 6731195, overlap 6731215 AGCATCTTGATCGTG CTCGC-CGGCCG GTAG CGGCCGTGCGGG TCTTTCGCCGCGAGC mdh 6732712 - 6731717 - | malate dehydrogenase TERM 2380 6732845 - 6732806 - R 100 -31.6 -2.62616 | gap 1 TGAGGTTGGACACGA CGCAGGGCGCCCCCGACCG GTG CGGTCGGGGGCGCCCTG-G AACGTGCTCGGCAGA sdhB 6733647 - 6732868 - | succinate dehydrogenase iron-sulfur subunit sdhA 6735398 - 6733647 - | succinate dehydrogenase flavoprotein subunit RHA1_ro06247 6735857 - 6735414 - | succinate dehydrogenase hydrophobic membrane anchor protein RHA1_ro06248 6736263 - 6735859 - | succinate dehydrogenase hydrophobic membrane anchor protein TERM 2381 6736051 - 6736063 + g 70 -9.1 -3.83568 | overlap 6736048 CGCGAGCTCCATGAG CCCGA CGA TCGGG TTCTTGTAGGTCTCG RHA1_ro06249 6736518 - 6736922 + | cytidine deaminase deoA 6736915 - 6738210 + | thymidine phosphorylase add2 6738220 - 6739305 + | adenosine deaminase RHA1_ro06252 6740569 - 6739325 - | hypothetical protein RHA1_ro06253 6740749 - 6742050 + | hypothetical protein RHA1_ro06254 6742426 - 6743553 + | transposase TERM 2382 6743827 - 6743807 - g 70 -12.5 -3.28712 | overlap 6743763 CGGTCCTCCTGACAA CGATGCGCG ATG CGCGCAGCG AGAATGCCACATTTC RHA1_ro06255 6743575 - 6744381 + | uracil phosphoribosyltransferase RHA1_ro06256 6745979 - 6744390 - | phosphoglucomutase RHA1_ro06257 6746776 - 6745976 - | purine nucleoside phosphorylase RHA1_ro06258 6746779 - 6747477 + | enoyl-CoA hydratase RHA1_ro06259 6747490 - 6748650 + | amidohydrolase TERM 2383 6749601 - 6749639 + G 82 -14.6 -3.46563 | gap 2 ACGGTCGGCCCGGAC GCCCTCGCCGACACGCCG CAGTC CGGCG-G-CGGCGAGGAC TTCTCCTGGTATCTC RHA1_ro06260 6748647 - 6749798 + | aminoacylase RHA1_ro06261 6750279 - 6749818 - | hypothetical protein TERM 2384 6750377 - 6750355 - H 100 -9 -4.85599 | GCGATTGCAGAAAAA GCCGGCCGGA GAC CCCGGTCGAC AGTTGAATTGGAGGA dldH6 6750396 - 6751799 + | flavoprotein disulfide reductase TERM 2385 6751888 - 6751850 - f 93 -18.9 -2.87132 | TCCTCCGGTGAGATA GTCGAGGCACGGTTCGA AATCA TCGACCCGTGCCTCGGC GCTCTCCCGCCCCGC RHA1_ro06263 6751969 - 6753153 + | aminotransferase RHA1_ro06264 6754631 - 6753138 - | glycerol kinase glpA 6754682 - 6756424 + | glycerol-3-phosphate dehydrogenase RHA1_ro06266 6756938 - 6756402 - | hypothetical protein RHA1_ro06267 6758082 - 6757123 - | hypothetical protein RHA1_ro06268 6758136 - 6758714 + | hypothetical protein RHA1_ro06269 6758722 - 6759453 + | hypothetical protein RHA1_ro06270 6760199 - 6759450 - | DNA-formamidopyrimidine glycosylase RHA1_ro06271 6764751 - 6760201 - | ATP-dependent helicase RHA1_ro06272 6764755 - 6765804 + | hypothetical protein RHA1_ro06273 6766279 - 6766671 + | hypothetical protein RHA1_ro06274 6767654 - 6766668 - | acyl-CoA dehydrogenase RHA1_ro06275 6769220 - 6767703 - | aldehyde dehydrogenase (NAD+) RHA1_ro06276 6769430 - 6769894 + | AsnC family transcriptional regulator lat 6769960 - 6771303 + | L-lysine aminotransferase RHA1_ro06278 6771300 - 6772088 + | protein-tyrosine phosphatase RHA1_ro06279 6772384 - 6772052 - | hypothetical protein RHA1_ro06280 6772725 - 6772387 - | hypothetical protein RHA1_ro06281 6773137 - 6772727 - | hypothetical protein TERM 2386 6773196 - 6773147 - R 100 -25.3 -2.8937 | gap 1, opp_overlap 6773145 6773195, overlap 6773150 AGACATGCGTACAGA CTACT-GTGAGTCCTTCTCGACCC CGG GGGCCGAGAAGGACTCACGAGTGG TGCTGGCGCCTATTT TERM 2387 6773193 - 6773150 - R 100 -25.6 -2.69468 | gap 1, opp_overlap 6773145, overlap 6773147 CATGCGTACAGACTA CT-GTGAGTCCTTCTCGACCC CGG GGGCCGAGAAGGACTCACGAG TGGTGCTGGCGCCTA RHA1_ro06282 6775017 - 6773206 - | acetyl/propionyl-CoA carboxylase alpha subunit TERM 2388 6773338 - 6773352 + g 74 -11.4 -3.70751 | GAGGACGGCGATGAG GTCGCC CTC GGCGAC TTGTTGGCCTTCTTC TERM 2389 6774577 - 6774600 + g 75 -4.5 -4.59109 | gap 1, overlap 6774583 GACGGGGTCCTTGGT GCCGGCGGCC ATCGG GGCC-TTGGC TTTTTCGGCGATGTG RHA1_ro06283 6776505 - 6775129 - | hypothetical protein RHA1_ro06284 6776943 - 6776527 - | hypothetical protein RHA1_ro06285 6777839 - 6776940 - | thiosulfate sulfurtransferase RHA1_ro06286 6777987 - 6778403 + | hypothetical protein RHA1_ro06287 6779805 - 6778363 - | hypothetical protein RHA1_ro06288 6781322 - 6779805 - | hypothetical protein RHA1_ro06289 6781571 - 6783289 + | multidrug ABC transporter RHA1_ro06290 6783916 - 6783272 - | Maf-like protein RHA1_ro06291 6784289 - 6783927 - | hypothetical protein RHA1_ro06292 6785926 - 6784286 - | acetyl/propionyl-CoA carboxylase beta subunit TERM 2390 6784805 - 6784822 + g 72 -3.3 -4.57073 | gap 1, overlap 6784805 6784806 GAACGCGTCGCAGGT G-CGCACG AAG CGGGCGGC TTTTTCGGAGGCGTC RHA1_ro06293 6786043 - 6786891 + | biotin--[acetyl-CoA-carboxylase] ligase RHA1_ro06294 6786908 - 6787465 + | hypothetical protein RHA1_ro06295 6787481 - 6788038 + | hypothetical protein TERM 2391 6788737 - 6788693 - g 93 -21.3 -3.15427 | AAGATCGGTGACGAA GGCCCCGCCGCGGAGCGTCGC ATC GCGACGGTCCGCGGCGTCGGC TTCCGCATCAACACC RHA1_ro06296 6788090 - 6788758 + | response regulator, two-component system RHA1_ro06297 6788767 - 6790101 + | sensor kinase, two-component system RHA1_ro06298 6790686 - 6790105 - | hypothetical protein purK 6790781 - 6792040 + | phosphoribosylaminoimidazole carboxylase ATPase subunit purE 6792033 - 6792551 + | phosphoribosylaminoimidazole carboxylase catalytic subunit TERM 2392 6792624 - 6792566 - T 100 -29.6 -2.52543 | opp_overlap 6792566, overlap 6792599 ACCGCGTCGAACTGA GCCGCCACTCTTCGCTGCTCCGGGGCTG AAC CAGCCCTGGGGGAGCAAGGAGTGGCGGC TCAGTTCACTTCGGG TERM 2393 6792566 - 6792624 + T 100 -34 -2.57013 | opp_overlap 6792566 6792599 ACCGCGTCGAACTGA GCCGCCACTCTTCGCTGCTCCGGGGCTG AAC CAGCCCTGGGGGAGCAAGGAGTGGCGGC TCAGTTCACTTCGGG RHA1_ro06301 6793349 - 6792630 - | hypothetical protein RHA1_ro06302 6793589 - 6793945 + | hypothetical protein RHA1_ro06303 6794649 - 6793930 - | hypothetical protein RHA1_ro06304 6796121 - 6794673 - | LytR family transcriptional regulator TERM 2394 6795011 - 6795069 + g 71 -11.1 -3.55444 | gap 3, overlap 6795012 CCTCGCCCTGGCCGT AGCCGAGCGACGT-GAGGGCGTCGGCGA CGCCGT TCGC-GAGGCCCCCGACGTCGCT-GGCA TTTGCGACGTCGACG TERM 2395 6795012 - 6795068 + g 70 -14.6 -2.73124 | gap 3, overlap 6795011 CTCGCCCTGGCCGTA GCCGAGCGACGT-GAGGGCGTCGGCGA CGCCGT TCGC-GAGGCCCCCGACGTCGCT-GGC ATTTGCGACGTCGAC rfbD 6796271 - 6797059 + | dTDP-4-dehydrorhamnose reductase TERM 2396 6797481 - 6797526 + G 79 -15.4 -3.29263 | gap 1, overlap 6797479 GGGAGCATCTACCCG TCGGCGCGCCAGGTGCCCGAC CTCGT GTCGGGTGCCGGGCACG-CGA TTCTGGGCACGGTGT RHA1_ro06306 6797094 - 6797993 + | glycosyltransferase RHA1_ro06307 6798010 - 6799062 + | mannose-1-phosphate guanylyltransferase TERM 2397 6799076 - 6799095 + T 71 -10.6 -3.57462 | opp_overlap 6799075 GAGAGATCAACGTAC CCCTGCCC TGAA GGGCCGGG TTTGCCAGTCGCGTC RHA1_ro06308 6799904 - 6799215 - | transposase RHA1_ro06309 6799939 - 6800328 + | transposase RHA1_ro06310 6801151 - 6800603 - | hypothetical protein TERM 2398 6800958 - 6801000 + g 72 -14.8 -2.88663 | overlap 6800961 TGCAGGGTCAGGAGC ACGTGACATCCTCCCTCGTC CAG GACGAGGGAGGACGCCGTGA TGTGTCCGGGTGCGT TERM 2399 6800961 - 6800997 + g 78 -17.3 -2.69468 | overlap 6800958 AGGGTCAGGAGCACG TGACATCCTCCCTCGTC CAG GACGAGGGAGGACGCCG TGATGTGTCCGGGTG RHA1_ro06311 6802526 - 6801162 - | F420-0--gamma-glutamyl ligase RHA1_ro06312 6803389 - 6802523 - | LPPG:FO 2-phospho-L-lactate transferase RHA1_ro06313 6803788 - 6804255 + | transcriptional regulator RHA1_ro06314 6804673 - 6804257 - | hypothetical protein RHA1_ro06315 6804736 - 6805224 + | hypothetical protein manB 6805329 - 6806696 + | phosphomannomutase/phosphoglucomutase RHA1_ro06317 6806774 - 6807853 + | hypothetical protein manA2 6807853 - 6809085 + | mannose-6-phosphate isomerase TERM 2400 6809199 - 6809187 - g 70 -9.1 -3.91716 | TCATGGGGGAAAGAA GGCGA TTC TCGCC GCGCTCGGCGCCAAT RHA1_ro06319 6809164 - 6810090 + | cation efflux protein RHA1_ro06320 6810119 - 6811627 + | amino acid transporter RHA1_ro06321 6811652 - 6812332 + | TetR family transcriptional regulator ahcY 6812423 - 6813907 + | S-adenosyl-L-homocysteine hydrolase TERM 2401 6813915 - 6813954 + F 100 -21.5 -3.75024 | gap 1, opp_overlap 6813909 GCTACTAGAGGCCGC GGC-GTCCCCCGGCCCGT CGCGT GCGGGCCGGGGGATAGCC TTCTTCCTCGTGGGA RHA1_ro06323 6813964 - 6814647 + | thymidylate kinase mtrA 6814693 - 6815370 + | response regulator, two-component system TERM 2402 6815742 - 6815705 - g 72 -13.4 -3.14132 | gap 1, opp_overlap 6815701 GGCCGCGCTGACGAA CCG-GGAGCCCGACGCC GGTCA GGCGTCGGGGTCGGCGG GAACGTTCGATCCCG mtrB 6815367 - 6817139 + | sensor histidine kinase RHA1_ro06326 6817136 - 6818929 + | lipoprotein LpqB RHA1_ro06327 6818961 - 6819659 + | hypothetical protein RHA1_ro06328 6819831 - 6820508 + | hypothetical protein TERM 2403 6820581 - 6820611 + F 100 -19 -4.60797 | opp_overlap 6820581 GCGCCTACCATGGAA TCCGGCCGGGGTTC TCG GACCTCCGGCCGGA TTTTGTGTGTCACCC TERM 2404 6820611 - 6820581 - f 85 -16.8 -3.09516 | opp_overlap 6820581 GCGCCTACCATGGAA TCCGGCCGGGGTTC TCG GACCTCCGGCCGGA TTTTGTGTGTCACCC secA 6820660 - 6823527 + | preprotein translocase subunit SecA RHA1_ro06330 6824068 - 6823544 - | hypothetical protein RHA1_ro06331 6824175 - 6824612 + | hypothetical protein TERM 2405 6825737 - 6825768 + G 70 -8.6 -3.85817 | TTCGCGCCGGCCACC CTGCACGCGATGAG TGCC CGTGTCGCGAGCAG TTTCTCGCAGCGGAT RHA1_ro06332 6824606 - 6826030 + | hypothetical protein RHA1_ro06333 6826070 - 6826573 + | hypothetical protein RHA1_ro06334 6826665 - 6827780 + | oxidoreductase TERM 2406 6827765 - 6827791 + F 81 -13.1 -3.65522 | gap 1, overlap 6827781 GGCGGCAGGGGACTG CACGCTCGACGC GTAA GCGT-GAGCGTG TTGTTCACATGACTC RHA1_ro06335 6827843 - 6829099 + | fatty acid desaturase RHA1_ro06336 6829211 - 6830449 + | fatty acid desaturase RHA1_ro06337 6831364 - 6830480 - | GTPase aroA 6832782 - 6831466 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2407 6833127 - 6833116 - g 76 -7.2 -4.30719 | TCGGTCGACAACAAA CCGG CATT CCGG AACGCGTTCAAATAC RHA1_ro06339 6832861 - 6833619 + | hypothetical protein RHA1_ro06340 6834100 - 6833606 - | hypothetical protein RHA1_ro06341 6834279 - 6834938 + | RNA polymerase sigma factor RpoE RHA1_ro06342 6834935 - 6835216 + | anti-sigma factor TERM 2408 6835228 - 6835274 + F 100 -22.5 -3.29144 | gap 1, opp_overlap 6835233 6835234 6835236, overlap 6835233 ATAACTCGTCAGAAC AGCAATCAGGGGCCGGAAAGCA TCGC TGCTTTCCGGCCCCTGGT-GCG TTCTACGGCGCGTCA TERM 2409 6835233 - 6835270 + F 100 -26.5 -2.59431 | opp_overlap 6835233 6835234 6835236, overlap 6835228 TCGTCAGAACAGCAA TCAGGGGCCGGAAAGCA TCGC TGCTTTCCGGCCCCTGG TGCGTTCTACGGCGC TERM 2410 6835270 - 6835233 - f 100 -24.3 -3.41745 | opp_overlap 6835233 6835228, overlap 6835234 6835236 TCGTCAGAACAGCAA TCAGGGGCCGGAAAGCA TCGC TGCTTTCCGGCCCCTGG TGCGTTCTACGGCGC TERM 2411 6835269 - 6835234 - f 100 -27.8 -2.64726 | opp_overlap 6835233 6835228, overlap 6835233 6835236 CGTCAGAACAGCAAT CAGGGGCCGGAAAGCA TCGC TGCTTTCCGGCCCCTG GTGCGTTCTACGGCG TERM 2412 6835267 - 6835236 - f 100 -24.6 -2.86181 | opp_overlap 6835233 6835228, overlap 6835234 6835233 TCAGAACAGCAATCA GGGGCCGGAAAGCA TCGC TGCTTTCCGGCCCC TGGTGCGTTCTACGG RHA1_ro06343 6835456 - 6835671 + | putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit RHA1_ro06344 6835689 - 6837191 + | histidine kinase TERM 2413 6837207 - 6837236 + T 79 -14.9 -2.9675 | opp_overlap 6837209, overlap 6837203 TCGGCGGGCAAGCAA AAGGCCCGGCACC ATGT GGTGCCGGGCCCG TCTCCTTCTGAAGTA TERM 2414 6837234 - 6837209 - T 100 -21.9 -4.4078 | opp_overlap 6837207 6837203 GGCGGGCAAGCAAAA GGCCCGGCACC ATGT GGTGCCGGGCC CGTCTCCTTCTGAAG RHA1_ro06345 6837506 - 6837252 - | WhiB family transcriptional regulator TERM 2415 6837649 - 6837633 - R 72 -3.5 -4.67608 | opp_overlap 6837642 GATGTCAATAGAAAA CCGCCGC ACC GTGGGGG AGCTCACGTTCTTAG RHA1_ro06346 6838729 - 6837746 - | hypothetical protein RHA1_ro06347 6838779 - 6839216 + | hypothetical protein TERM 2416 6839253 - 6839202 - T 70 -14.2 -2.58544 | overlap 6839201 GCCGACGCCGACAAC CCGTCGGACCGCTAGCCCACCTCG GACG CGAGGCGGCCGAGCGGCTCCCCGG TCAGCCGGTAAGTGG RHA1_ro06348 6839692 - 6839213 - | acetyltransferase RHA1_ro06349 6840165 - 6839689 - | phosphoglycerate mutase RHA1_ro06350 6840220 - 6841170 + | sporulation initiation inhibitor protein RHA1_ro06351 6841972 - 6841142 - | reductase RHA1_ro06352 6842811 - 6841981 - | NAD(P)H dehydrogenase (quinone) RHA1_ro06353 6842911 - 6843897 + | AraC family transcriptional regulator RHA1_ro06354 6843952 - 6844365 + | hypothetical protein RHA1_ro06355 6845589 - 6844375 - | hypothetical protein RHA1_ro06356 6847266 - 6845599 - | cold-shock DEAD-box protein TERM 2417 6846741 - 6846766 + g 70 -12.5 -3.30124 | opp_overlap 6846734 CGAGCAGACGGCCCG GGGTGCCCACG ACGA CGTCGGCGCCC TTCTGGAGCGTCGCG RHA1_ro06357 6847588 - 6848268 + | hypothetical protein RHA1_ro06358 6848400 - 6848630 + | hypothetical protein TERM 2418 6848682 - 6848632 - T 100 -38.6 -3.20723 | opp_overlap 6848643 6848680, overlap 6848643 CTCCGACCAAGTGAA CACACGGGAAAGGGCCCGCAGTCG ACT CGACTGCGGGCCCTTTCCCATGCG CGGTGTCAGCGCTGT TERM 2419 6848671 - 6848643 - T 100 -26.1 -3.66883 | opp_overlap 6848643, overlap 6848632 TGAACACACGGGAAA GGGCCCGCAGTCG ACT CGACTGCGGGCCC TTTCCCATGCGCGGT TERM 2420 6848643 - 6848671 + T 100 -26.1 -3.60098 | opp_overlap 6848643 6848632 TGAACACACGGGAAA GGGCCCGCAGTCG ACT CGACTGCGGGCCC TTTCCCATGCGCGGT RHA1_ro06359 6849377 - 6848688 - | TetR family transcriptional regulator RHA1_ro06360 6849602 - 6850723 + | hypothetical protein RHA1_ro06361 6850840 - 6852042 + | molybdopterin biosynthesis-like protein MoeZ RHA1_ro06362 6852124 - 6852978 + | hypothetical protein RHA1_ro06363 6853640 - 6852975 - | GntR family transcriptional regulator TERM 2421 6854123 - 6854149 + G 70 -12.2 -3.35996 | GCCTTCGTGGCCGTC CCGCTCGCCGAG GCA TTCGGCTGGCGG TTCTCGATCGGCGTG RHA1_ro06364 6853652 - 6854899 + | major facilitator superfamily cyanate symporter narK 6855031 - 6856443 + | nitrite extrusion protein TERM 2422 6858172 - 6858151 - g 77 -10.9 -3.84639 | gap 1 CAACATCCAGAAGAA CGGCACCTAC TCG GT-GGTGCCG CGGATGCCCGGCGGC RHA1_ro06366 6856496 - 6859006 + | nitrite reductase [NAD(P)H] large subunit RHA1_ro06367 6859088 - 6859489 + | nitrite reductase [NAD(P)H] small subunit RHA1_ro06368 6859486 - 6860643 + | bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein TERM 2423 6861002 - 6861059 + G 70 -13.1 -3.2614 | gap 1 CGACGCGGTCGTGCT CGCCGCGGCCGGATCGTCCGACCCGCGG GCC CTGCGTGACGTCCGGCGCG-CCGCGGCG TTGCTGTCGGAGCTC RHA1_ro06369 6860640 - 6861344 + | hypothetical protein RHA1_ro06370 6863097 - 6861349 - | molybdopterin biosynthesis protein RHA1_ro06371 6863307 - 6864752 + | MocR family transcriptional regulator RHA1_ro06372 6864893 - 6866158 + | triacylglycerol lipase RHA1_ro06373 6866480 - 6866172 - | hypothetical protein RHA1_ro06374 6867276 - 6866491 - | esterase RHA1_ro06375 6867333 - 6870629 + | ATP-dependent DNA helicase RHA1_ro06376 6870626 - 6873973 + | ATP-dependent DNA helicase RHA1_ro06377 6874337 - 6873939 - | hypothetical protein RHA1_ro06378 6874459 - 6875526 + | potassium channel protein nudC 6875547 - 6876458 + | NADH pyrophosphatase RHA1_ro06380 6876709 - 6876455 - | glutaredoxin RHA1_ro06381 6876790 - 6878928 + | helicase RHA1_ro06382 6879281 - 6879015 - | hypothetical protein TERM 2424 6879266 - 6879295 + g 95 -15.7 -4.05446 | gap 1 CCACCGTCTTTTCAA GGCCACGGACCCGC ATC GCG-GACCGTGGCC TTTGTAGTTCGAGCA RHA1_ro06383 6879400 - 6879720 + | hypothetical protein TERM 2425 6879793 - 6879743 - T 100 -27.7 -3.28924 | gap 1, opp_overlap 6879745, overlap 6879744 TACGGGGCGGGAGAA TTCGGGCGTTCGCCCGG-CCACTC ACAC GAGTGGTCCGGGCGAACGCCCGTT CTGTGTCTTCGAGGT TERM 2426 6879792 - 6879744 - T 100 -31.2 -2.57211 | gap 1, opp_overlap 6879745, overlap 6879743 ACGGGGCGGGAGAAT TCGGGCGTTCGCCCGG-CCACTC ACAC GAGTGGTCCGGGCGAACGCCCGT TCTGTGTCTTCGAGG TERM 2427 6879745 - 6879791 + T 100 -34.7 -3.68962 | gap 1, opp_overlap 6879744 6879743 CGGGGCGGGAGAATT CGGGCGTTCGCCCGG-CCACTC ACAC GAGTGGTCCGGGCGAACGCCCG TTCTGTGTCTTCGAG RHA1_ro06384 6881163 - 6879808 - | hypothetical protein TERM 2428 6880003 - 6880021 + g 74 -13.8 -3.28712 | CGCACTGTTGAAGTC GGTCGCGG AAC CCGCGGCC TTCTGCAGCCAGGCA RHA1_ro06385 6882074 - 6881160 - | hypothetical protein TERM 2429 6882146 - 6882097 - R 81 -11.3 -4.10161 | overlap 6882098 CATCAGCGCCGAAAA CGCGGGTTGTCCACAGGCCGAAA CATG CCTCGACCTGCAGACTTCCCGCT ATCGAAAATTGGTGG TERM 2430 6882145 - 6882098 - R 80 -14.8 -3.05775 | overlap 6882097 ATCAGCGCCGAAAAC GCGGGTTGTCCACAGGCCGAAA CATG CCTCGACCTGCAGACTTCCCGC TATCGAAAATTGGTG RHA1_ro06386 6883599 - 6882172 - | hypothetical protein RHA1_ro06387 6883679 - 6884734 + | hypothetical protein RHA1_ro06388 6885512 - 6884739 - | hypothetical protein TERM 2431 6884953 - 6884907 - Gf 80 -15 -3.14344 | gap 1 CACGGCGGCGATCAA CCGGGCGGACCGGCGGTCGGG ATGCGA CTCGGCCG-CGGCCCGCGCGG CGTCGTCGGCGGCGT RHA1_ro06389 6885505 - 6888483 + | hypothetical protein TERM 2432 6888499 - 6888541 + Tr 100 -25 -2.94099 | opp_overlap 6888502, overlap 6888502 AGGCGCTTCAACGCA GAACGAGGCCCTGTCATCCG AAC CGGATGACAGGGCCTCGTCG TATCTGATCGGAAGA TERM 2433 6888502 - 6888538 + Tr 100 -31.1 -2.71268 | opp_overlap 6888502, overlap 6888499 CGCTTCAACGCAGAA CGAGGCCCTGTCATCCG AAC CGGATGACAGGGCCTCG TCGTATCTGATCGGA TERM 2434 6888538 - 6888502 - TR 100 -31.1 -3.41878 | opp_overlap 6888502 6888499 CGCTTCAACGCAGAA CGAGGCCCTGTCATCCG AAC CGGATGACAGGGCCTCG TCGTATCTGATCGGA RHA1_ro06390 6889111 - 6888557 - | hypothetical protein TERM 2435 6889523 - 6889575 + r 100 -20.5 -2.79183 | ATTGCGAGGCCACGC GATGCAGGAGTGCCCCGCGCGCAGT CGT GCTGCGTGCGGGGCACTCCCGAAAA TGTGCTGCGGATCAG RHA1_ro06391 6889919 - 6889587 - | hypothetical protein TERM 2436 6890476 - 6890444 - R 100 -26.5 -3.09516 | opp_overlap 6890444, overlap 6890447 CCCGCTACCACCGAA GAACCGGTGTCCTGG ATT CCAGGACACCGGTTC TTTTTTGTCTCCGCT TERM 2437 6890444 - 6890476 + r 100 -26.5 -5.37043 | opp_overlap 6890444 6890447 CCCGCTACCACCGAA GAACCGGTGTCCTGG ATT CCAGGACACCGGTTC TTTTTTGTCTCCGCT TERM 2438 6890473 - 6890447 - R 100 -22.4 -3.69395 | opp_overlap 6890444, overlap 6890444 GCTACCACCGAAGAA CCGGTGTCCTGG ATT CCAGGACACCGG TTCTTTTTTGTCTCC RHA1_ro06393 6891160 - 6890516 - | GntR family transcriptional regulator RHA1_ro06394 6892328 - 6891273 - | isopenicillin N synthase TERM 2439 6891476 - 6891459 - G 70 -9.1 -3.9461 | gap 1, opp_overlap 6891457 CCCGTCGAAGAAGAA CGCC-GCG GAT CGCCGGCG AATGATCTGTCCGTC RHA1_ro06395 6893234 - 6892353 - | ABC transporter, permease component RHA1_ro06396 6894013 - 6893231 - | ABC transporter, ATP-binding component RHA1_ro06397 6894354 - 6895532 + | hypothetical protein RHA1_ro06398 6897153 - 6895519 - | acyl-CoA synthetase TERM 2440 6897285 - 6897256 - R 100 -20 -3.71848 | GTCCCGCACGAAGAA GCCCCCGCCGCA GGTGAG CGCGGCGGGGGC TACACCCCTCGATGA RHA1_ro06399 6898523 - 6897318 - | acyl-CoA dehydrogenase RHA1_ro06400 6899959 - 6898553 - | butyryl-CoA dehydrogenase RHA1_ro06401 6900457 - 6900131 - | multicopper oxidase TERM 2441 6900804 - 6900858 + r 86 -13.7 -3.71848 | gap 2, overlap 6900805 6900817 GCGAGGGCAGTCACG ATTCTCCTGGGTC--CTGTCGCCGCGA GGA TCGCGGCGGCAATTGGCTCAGGAGAAA TTCTTCGTGACGGAG TERM 2442 6900805 - 6900857 + r 87 -17.2 -2.82895 | gap 2, overlap 6900804 6900817 CGAGGGCAGTCACGA TTCTCCTGGGTC--CTGTCGCCGCGA GGA TCGCGGCGGCAATTGGCTCAGGAGAA ATTCTTCGTGACGGA TERM 2443 6900817 - 6900843 + r 76 -14.4 -3.05384 | overlap 6900805 6900804 CGATTCTCCTGGGTC CTGTCGCCGCGA GGA TCGCGGCGGCAA TTGGCTCAGGAGAAA RHA1_ro06402 6901756 - 6900968 - | inositol-phosphate phosphatase RHA1_ro06403 6902300 - 6901806 - | carbonate dehydratase prfB 6902466 - 6903572 + | peptide chain release factor 2 RHA1_ro06405 6903578 - 6904474 + | hypothetical protein RHA1_ro06406 6904471 - 6904923 + | hypothetical protein RHA1_ro06407 6904979 - 6905668 + | ABC transporter ATP-binding protein RHA1_ro06408 6905735 - 6906640 + | cell division protein FtsX TERM 2444 6906749 - 6906727 - g 72 -5.5 -4.43309 | overlap 6906728 GAACGTGAAGGAAAA GGGCCGCAA GGTCA TTGCGACCA ATCGCAAGGCGCGTC smpB 6906716 - 6907189 + | SsrA-binding protein TERM 2445 6907198 - 6907238 + F 74 -10.4 -3.72695 | gap 1, overlap 6907199 GCGCTGACATCGATC CTGCTCGCGCTCGTGGCCG CGAT CGGTTACG-GCGTGAGCGA TTTCATCGGGGGAGT TERM 2446 6907199 - 6907237 + F 73 -13.9 -2.83403 | gap 1, overlap 6907198 CGCTGACATCGATCC TGCTCGCGCTCGTGGCCG CGAT CGGTTACG-GCGTGAGCG ATTTCATCGGGGGAG RHA1_ro06410 6907210 - 6908052 + | hypothetical protein TERM 2447 6908259 - 6908240 - f 74 -10 -3.76232 | overlap 6908256 GCTGCAAACATATAA GCGCCGAT TCCA ATCAGCGC GACTACGCACTCGCT TERM 2448 6908521 - 6908556 + F 100 -24.8 -4.72272 | opp_overlap 6908522, overlap 6908522 CGGCAGCTCCACCAG ATCCGGGCCGGACACC ACCA GGTGTCCGGCCCGGAC TTTTTCGTGCCCGGC TERM 2449 6908555 - 6908522 - f 100 -28.3 -2.79183 | opp_overlap 6908521 6908522 GGCAGCTCCACCAGA TCCGGGCCGGACACC ACCA GGTGTCCGGCCCGGA CTTTTTCGTGCCCGG TERM 2450 6908522 - 6908555 + F 100 -28.3 -3.43042 | opp_overlap 6908522, overlap 6908521 GGCAGCTCCACCAGA TCCGGGCCGGACACC ACCA GGTGTCCGGCCCGGA CTTTTTCGTGCCCGG RHA1_ro06411 6908607 - 6908981 + | camphor resistance CrcB protein RHA1_ro06412 6908978 - 6909322 + | camphor resistance CrcB protein RHA1_ro06413 6909343 - 6911028 + | phosphoglucomutase RHA1_ro06414 6911061 - 6912314 + | major facilitator superfamily multidrug transport protein RHA1_ro06415 6912341 - 6912829 + | hypothetical protein RHA1_ro06416 6912871 - 6913602 + | serine/threonine-protein kinase TERM 2451 6913842 - 6913890 + F 100 -22.6 -3.19653 | opp_overlap 6913850, overlap 6913850 CCTTAGCTCCACTTT CGAGAGAAGCCTCTCATCCGCA GACCA TGCGGGTGGGAGGCTTTCCTCG TTCATCCCCTTGTCC TERM 2452 6913882 - 6913850 - f 78 -13.4 -3.48924 | opp_overlap 6913842 6913850 CCACTTTCGAGAGAA GCCTCTCATCCGCA GACCA TGCGGGTGGGAGGC TTTCCTCGTTCATCC TERM 2453 6913850 - 6913882 + F 95 -17.8 -3.85704 | opp_overlap 6913850, overlap 6913842 CCACTTTCGAGAGAA GCCTCTCATCCGCA GACCA TGCGGGTGGGAGGC TTTCCTCGTTCATCC RHA1_ro06418 6913924 - 6914133 + | hypothetical protein RHA1_ro06419 6914814 - 6914413 - | histidine kinase RHA1_ro06421 6915891 - 6915367 - | hypothetical protein RHA1_ro06420 6914942 - 6915427 + | acetyltransferase RHA1_ro06422 6915955 - 6916803 + | hydrolase cobW 6916849 - 6917886 + | CobW protein RHA1_ro06424 6917883 - 6918542 + | reductase RHA1_ro06425 6919984 - 6918539 - | ATP-dependent RNA helicase RHA1_ro06426 6920629 - 6920216 - | molybdopterin converting factor moaC 6921596 - 6920622 - | bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein RHA1_ro06428 6922777 - 6921593 - | molybdopterin biosynthesis protein moaA 6922899 - 6923954 + | molybdenum cofactor biosynthesis protein A RHA1_ro06430 6923956 - 6924204 + | molybdopterin converting factor small subunit MoaD RHA1_ro06431 6924986 - 6924201 - | hypothetical protein nadE 6925830 - 6924991 - | NAD synthetase RHA1_ro06433 6925881 - 6926432 + | nucleosidase RHA1_ro06434 6927199 - 6926429 - | hypothetical protein RHA1_ro06435 6927833 - 6927234 - | TetR family transcriptional regulator RHA1_ro06436 6927935 - 6928498 + | NADPH-dependent FMN reductase RHA1_ro06437 6929289 - 6928528 - | hypothetical protein TERM 2454 6928592 - 6928617 + g 95 -17.6 -3.68962 | TCGAAGTCGTCACCG GCCGCCAGGG CGCAGT CCCTGGCGGC TTCTATCTGTTCACG RHA1_ro06438 6931690 - 6929579 - | transposase RHA1_ro06439 6932432 - 6932665 + | glutaredoxin-like protein NrdH nrdI 6932754 - 6933230 + | ribonucleotide reductase stimulatory protein RHA1_ro06441 6933290 - 6935371 + | ribonucleotide-diphosphate reductase subunit alpha nrdF 6935449 - 6936414 + | ribonucleotide-diphosphate reductase subunit beta TERM 2455 6936475 - 6936530 + T 100 -28.6 -2.52464 | gap 1 AGCCGGCCCAGGCCT G-TCGCCCGATGTCACACCTGTTCAGT TCG ACTGCACCGGTGTGACATCGGGCGAAC TGCGTTCAGCGGCGG RHA1_ro06443 6937009 - 6936536 - | MutT/NUDIX family protein RHA1_ro06444 6938082 - 6937018 - | ABC Fe(3+) transporter, substrate binding component TERM 2456 6937716 - 6937741 + g 75 -5.3 -4.56597 | gap 1 GCTGAGGCGAGTCCC CGTCGACGGTCG CCG CG-CCGACCACG TTTTTCCACAGACCG RHA1_ro06445 6939125 - 6938118 - | ABC Fe(3+) transporter, substrate binding component TERM 2457 6938505 - 6938457 - G 78 -18.2 -2.71144 | gap 2, overlap 6938441 GATCCCGCTGAACGA GGTCGTGCGG-TAG-AGGCGTGCC GTC GGCTCGCCCGCGAACCGCACGACC GAGATCACCGGATTC TERM 2458 6940184 - 6940201 + G 77 -11.3 -3.92963 | overlap 6940172 CCGGCCACCGGCGGT GTGCTGC TGTG GCAGCAC TTGTTCTGGTTCTTC RHA1_ro06446 6939428 - 6941218 + | cytochrome-c oxidase TERM 2459 6941236 - 6941262 + F 93 -18 -3.75153 | opp_overlap 6941236 CATCAGTTTCGGAAA GGCCCCGCCC CCACACC GGGCGGGGCC TTTCAGTTGGCACAA TERM 2460 6941262 - 6941236 - f 93 -18 -3.54741 | opp_overlap 6941236 CATCAGTTTCGGAAA GGCCCCGCCC CCACACC GGGCGGGGCC TTTCAGTTGGCACAA serB 6941323 - 6942543 + | phosphoserine phosphatase RHA1_ro06448 6942540 - 6943319 + | hypothetical protein RHA1_ro06450 6946112 - 6943965 - | isoamylase RHA1_ro06449 6943342 - 6944097 + | hypothetical protein RHA1_ro06451 6946163 - 6946987 + | ABC transporter, ATP-binding component TERM 2461 6947121 - 6947172 + G 72 -13.2 -3.21099 | overlap 6947124 GGACGCGTCCACGGT CATCCTC-AT-CCGTGACGCCGCGGC AGAC GCCGCGGCG-CCCGGCATCGAGG-TG TTCCTCCTCCGCCGG TERM 2462 6947124 - 6947170 + G 80 -16 -3.17051 | gap 3, overlap 6947121 CGCGTCCACGGTCAT CCTC-AT-CCGTGACGCCGCGGC AGAC GCCGCGGCG-CCCGGCATCGAGG TGTTCCTCCTCCGCC RHA1_ro06452 6947053 - 6947895 + | hypothetical protein RHA1_ro06453 6947953 - 6948732 + | enoyl-CoA hydratase RHA1_ro06454 6948788 - 6949759 + | hypothetical protein TERM 2463 6949855 - 6949894 + G 100 -21.4 -3.66356 | GCTTCGCACTGACCA CGTCTACGCGCCTGGCCG ACAT CGGCCGGGCGCGTGCGCG TTTCGGCTTACACGT RHA1_ro06455 6949761 - 6950918 + | hypothetical protein RHA1_ro06456 6952265 - 6950958 - | hypothetical protein RHA1_ro06457 6952405 - 6953148 + | acetyltransferase RHA1_ro06458 6953174 - 6953431 + | hypothetical protein RHA1_ro06459 6954645 - 6953440 - | starch synthase RHA1_ro06460 6956279 - 6954681 - | hypothetical protein RHA1_ro06461 6957103 - 6956276 - | 3-demethylubiquinone-9 3-O-methyltransferase RHA1_ro06462 6957345 - 6958145 + | electron transfer flavoprotein beta-subunit RHA1_ro06463 6958192 - 6959148 + | electron transfer flavoprotein alpha-subunit TERM 2464 6959154 - 6959203 + F 100 -34.5 -3.14136 | gap 1, overlap 6959157 6959195 CAAGGGCTGATTCTC GA-CCGACGGCGGCCCCGCTCCCT TCG AGGGAGCGGGGCCGCCGTCGTATC TTCCGTCGTTCATCC TERM 2465 6959157 - 6959199 + F 100 -40.8 -3.1203 | overlap 6959154 6959195 GGGCTGATTCTCGAC CGACGGCGGCCCCGCTCCCT TCG AGGGAGCGGGGCCGCCGTCG TATCTTCCGTCGTTC RHA1_ro06464 6959283 - 6960116 + | hypothetical protein RHA1_ro06465 6960113 - 6961036 + | acyltransferase RHA1_ro06466 6961054 - 6962274 + | cysteine desulfurase trmU 6962274 - 6963368 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase RHA1_ro06468 6963365 - 6964387 + | hypothetical protein TERM 2466 6965962 - 6965937 - g 72 -13.9 -3.14132 | opp_overlap 6965936 GCTCTTCCGGACCAA GGCCGGCGGCC TGTC GGCCAACGGCC GCAGGCTGCTCGACA ligA 6964429 - 6966519 + | NAD-dependent DNA ligase LigA RHA1_ro06470 6966577 - 6967065 + | acetyltransferase RHA1_ro06471 6967813 - 6967103 - | hypothetical protein RHA1_ro06472 6967958 - 6968515 + | hypothetical protein gatC 6968576 - 6968875 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 6968872 - 6970353 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 2467 6970364 - 6970380 + T 71 -13.7 -2.73364 | opp_overlap 6970353 ACTAGGAGCAGTCGG GCAGGGC GGT GCCCTGC TCGTTGCCGTAGCGG RHA1_ro06475 6971801 - 6970350 - | hypothetical protein RHA1_ro06476 6972439 - 6971798 - | hypothetical protein RHA1_ro06477 6972579 - 6973775 + | sensor kinase, two-component system RHA1_ro06478 6973797 - 6974447 + | response regulator, two-component system pfkA 6974544 - 6975575 + | 6-phosphofructokinase gatB 6975618 - 6977129 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 2468 6977143 - 6977186 + T 100 -30.6 -3.53012 | gap 1, opp_overlap 6977172, overlap 6977146 GAATCCCTCCTGCAC CG-ACGGGACGCTCGTTCGGT TGA ACCGAACGAGCGTCCCGTTCG TTTCGACGGGGCGGG TERM 2469 6977146 - 6977182 + T 100 -31.1 -3.51232 | opp_overlap 6977172, overlap 6977143 TCCCTCCTGCACCGA CGGGACGCTCGTTCGGT TGA ACCGAACGAGCGTCCCG TTCGTTTCGACGGGG RHA1_ro06481 6978353 - 6977205 - | glucose dehydrogenase RHA1_ro06482 6978374 - 6979321 + | hypothetical protein TERM 2470 6979338 - 6979378 + T 100 -30.5 -4.41494 | CGTCTTTTCCTTACA CGGCTGCGCCGCACCCCCG GAT CGGGAGTGCGGCGCAGTCG TTTTCGTTCGGGATC RHA1_ro06483 6981017 - 6979392 - | cationic amino acid transport protein TERM 2471 6981056 - 6981090 + r 71 -9.3 -3.71487 | opp_overlap 6981053 CGTGTGCAAGAAGCG CGGGCTCAACTGATC AATTC GATCAGTAGAACCTG TTCTTGGGTGTCGTC TERM 2472 6981172 - 6981227 + r 100 -37.2 -3.08679 | gap 1, opp_overlap 6981179, overlap 6981175 6981179 TGTCGTCGCACCGAC GACG-GAAGCCGGGTGCCGCGGCAGGA AGC TCCTGCTGCGGCACCCGGCTTCGTGTC TGTTCGGTGCGCCCG TERM 2473 6981175 - 6981223 + r 100 -35.5 -3.11072 | opp_overlap 6981179, overlap 6981172 6981179 CGTCGCACCGACGAC GGAAGCCGGGTGCCGCGGCAGGA AGC TCCTGCTGCGGCACCCGGCTTCG TGTCTGTTCGGTGCG TERM 2474 6981219 - 6981179 - R 100 -32.7 -3.10164 | opp_overlap 6981175 6981172 6981179 GCACCGACGACGGAA GCCGGGTGCCGCGGCAGGA AGC TCCTGCTGCGGCACCCGGC TTCGTGTCTGTTCGG TERM 2475 6981179 - 6981219 + r 100 -34.9 -3.37895 | opp_overlap 6981179, overlap 6981175 6981172 GCACCGACGACGGAA GCCGGGTGCCGCGGCAGGA AGC TCCTGCTGCGGCACCCGGC TTCGTGTCTGTTCGG ilvD2 6983098 - 6981254 - | dihydroxy-acid dehydratase TERM 2476 6981759 - 6981804 + g 70 -12.6 -3.34398 | gap 1, opp_overlap 6981757, overlap 6981757 6981790 6981792 TGGAAGTGGAACAGG TCTTCGTCGATGCCCGCCGTC TTGAT GACGGCGC-CGTCGACGGCGA TGTTTCCGCGCAGCA TERM 2477 6981870 - 6981905 + g 71 -9.6 -3.71848 | gap 1, overlap 6981867 6981883 AAGTCGCGGATGCAG CCGTTGG-CGGCGTCCG TGT CGAGCGACGACCAGCGG TTGTTCGTCGAGAAC TERM 2478 6982912 - 6982934 + g 95 -19.2 -3.65046 | opp_overlap 6982896 CGGCGGCGCGGACGG CGTCGGCGAC GAT GTCGCCGACG TTCTTCAGGTGGACG RHA1_ro06485 6983864 - 6983151 - | hypothetical protein TERM 2479 6983851 - 6983877 + g 100 -10.9 -5.4505 | gap 1 GATAACGACGCGCCA CCCTCGTACAGC ATCA GCTG-ACGGGGG TTTTTTGTTGCCCGG ilvB5 6983916 - 6985859 + | acetolactate synthase 1 catalytic subunit ilvH 6985856 - 6986359 + | acetolactate synthase 3 regulatory subunit ilvC 6986397 - 6987410 + | ketol-acid reductoisomerase TERM 2480 6987439 - 6987497 + F 100 -18.8 -4.04806 | opp_overlap 6987438 6987441 TCTGTTCCACCGAAC CACCGGCCCGATGCCGCATCGGTCTCGT CAG AGGCCCCCGATGTGACATTGGGCCGGTG TTGTTTCGTGTCCGA TERM 2481 6988337 - 6988312 - g 70 -8.9 -3.82084 | opp_overlap 6988332 GGCGAAGACCAAGAA GGGCGTCGTCA TCGT CAACGCCGCCC GTGGCGGTCTGATCG serA2 6987635 - 6989230 + | D-3-phosphoglycerate dehydrogenase TERM 2482 6989236 - 6989280 + F 100 -22.3 -3.00022 | CCTGGCCTAATCCCC ACTGTGCGCGTGTCACGAC CCCCGTT GTCGTGGCACGCGCACAGC TCTATGTGAAGTGAG TERM 2483 6990135 - 6990087 - g 72 -13.7 -3.14132 | opp_overlap 6990068 6990128, overlap 6990068 CGCGTCGGGGACGAA CCCGTCGATGTTCGAGCCGGTGC ACG GCAGCGCCCCGGACATCGCCGGC CAGGGGATCGCGGAT leuB3 6989302 - 6990312 + | 3-isopropylmalate dehydrogenase RHA1_ro06491 6991553 - 6990309 - | major facilitator transporter TERM 2484 6990336 - 6990380 + g 100 -29.6 -2.62616 | gap 1 TTCGATCTTGTCTCC CTCGATCCCTGTGGCCCGGTC TTCG GACCGGGCCACAGGGATC-AG TGGTATCGAGGCTGC RHA1_ro06492 6991669 - 6992442 + | hypothetical protein gltX 6992516 - 6993991 + | glutamyl-tRNA synthetase TERM 2485 6994067 - 6994025 - T 72 -3 -4.61527 | gap 4, opp_overlap 6994054, overlap 6994014 AAAAGGGTGTAAAAA CAGCCT-CTGACCAGACGATTT GGT AAATC-CC-GG-CAGTAGGCTG GTAATCTCTTCTTCG TERM 2486 6994361 - 6994392 + T 100 -20.4 -4.82901 | opp_overlap 6994361 6994365, overlap 6994365 TCGGGGCTACAAAAA GAAACACCCTCCAA GAAA TTGGAGGGTGTTTC TTTTTATCCGGACGA TERM 2487 6994392 - 6994361 - T 100 -20.4 -4.82901 | opp_overlap 6994361 6994365, overlap 6994365 TCGGGGCTACAAAAA GAAACACCCTCCAA GAAA TTGGAGGGTGTTTC TTTTTATCCGGACGA TERM 2488 6994365 - 6994388 + T 100 -15.4 -4.96501 | opp_overlap 6994361 6994365, overlap 6994361 GGCTACAAAAAGAAA CACCCTCCAA GAAA TTGGAGGGTG TTTCTTTTTATCCGG TERM 2489 6994388 - 6994365 - T 100 -15.4 -4.96501 | opp_overlap 6994365 6994361, overlap 6994361 GGCTACAAAAAGAAA CACCCTCCAA GAAA TTGGAGGGTG TTTCTTTTTATCCGG RHA1_ro06496 6994583 - 6994416 - | hypothetical protein TERM 2490 6994525 - 6994547 + g 79 -2 -4.94262 | CCGGCCTGATGATTC TTCCGC TCGAGTGCTTC GCGGAA TTTCTTTTTCGTGTC TERM 2491 6994627 - 6994649 + r 88 -2.6 -5.24531 | opp_overlap 6994624 TCTGTGAAGCTACGC CGAGGGCA CCGAGAA TGCTCCCG TTTTTTCTGCGCGGT RHA1_ro06497 6995184 - 6994666 - | hypothetical protein RHA1_ro06498 6995924 - 6995223 - | transcriptional regulator leuC2 6995982 - 6997484 + | isopropylmalate isomerase large subunit leuD 6997512 - 6998120 + | isopropylmalate isomerase small subunit RHA1_ro06501 6998279 - 6998971 + | DNA-binding protein TERM 2492 6998997 - 6999037 + T 100 -32.1 -3.41602 | opp_overlap 6998999 ACGGGACTGCCCGAA CACTGACAGGCGCCGACCC TGG GGGTTGGCGCCTGTCAGTG TTCTCCTGGCCTCCC TERM 2493 6999035 - 6998999 - T 100 -26.7 -3.02511 | opp_overlap 6998997 GGGACTGCCCGAACA CTGACAGGCGCCGACCC TGG GGGTTGGCGCCTGTCAG TGTTCTCCTGGCCTC RHA1_ro06502 7000010 - 6999075 - | MutT family hydrolase ppk 7002249 - 7000045 - | polyphosphate kinase RHA1_ro06504 7003019 - 7002318 - | hypothetical protein gpdA2 7003190 - 7004188 + | glycerol-3-phosphate dehydrogenase (NAD(P)+) RHA1_ro06506 7004193 - 7005317 + | cystathionine gamma-lyase ddl 7005410 - 7006516 + | D-alanyl-alanine synthetase A TERM 2494 7006566 - 7006522 - T 95 -14.8 -4.03234 | opp_overlap 7006520 7006519 TCTGCGCTAGAGAAA CCGCGGTCCGGCGCTCAGGG ATTCG CCACGGGCGCCGGATCGAGG GGCTTCTGCGGCAAC RHA1_ro06508 7007132 - 7006536 - | hypothetical protein RHA1_ro06509 7007368 - 7007135 - | hypothetical protein thiL 7007643 - 7008527 + | thiamine monophosphate kinase TERM 2495 7008863 - 7008894 + G 70 -15 -2.78891 | overlap 7008860 CAACGGTTCGGTCAT CGGCGCCGGTTCGG TCGT CGGTGCCGGCGCCG TCGTTCCGTTCAAAT RHA1_ro06511 7008537 - 7009058 + | transferase TERM 2496 7009634 - 7009648 + G 74 -11.4 -3.73068 | CATCCCTCACCGCTG TCCGCG TCG CGCGGA TTCTTCGGTTCGCGG ung 7009058 - 7009732 + | uracil-DNA glycosylase RHA1_ro06513 7010566 - 7009778 - | enoyl-CoA hydratase TERM 2497 7009866 - 7009888 + g 72 -13.4 -3.14211 | opp_overlap 7009820 TCGGCCGCGGTGGCG ATCGACGCGG CCT CCGCGTCGAG TTGCTCGGCGAGCGT TERM 2498 7010692 - 7010659 - R 100 -28.3 -5.71712 | GGCGACATAAAAAAA CTGCGCCCCCGACAC CTAA GTGTCGGGGGCGCAG TGACATCGCACGCAG rpmB 7010906 - 7010715 - | 50S ribosomal protein L28 RHA1_ro06515 7011124 - 7012830 + | kinase related to hydroxyacetone kinase recG 7012839 - 7015097 + | ATP-dependent DNA helicase TERM 2499 7015212 - 7015243 + F 74 -10 -3.76379 | opp_overlap 7015204 7015203, overlap 7015204 7015215 CTGAAATGTGGGATG CCACTTCTCCGCGG CCGT CCGCGGCGGGGTAG TTTGCTCCAATGTTC TERM 2500 7015446 - 7015404 - g 74 -16.2 -2.82193 | opp_overlap 7015399 ATGAGAGTTATCAGA TCGGCGAGGAGGGACACCCG GTT CGGGCGTACCTCTCCGTCGA CGAGATCGTCTCCGC pycA 7015253 - 7018657 + | pyruvate carboxylase RHA1_ro06518 7018654 - 7019220 + | methyltransferase coaD 7019217 - 7019711 + | phosphopantetheine adenylyltransferase RHA1_ro06520 7019820 - 7020593 + | hypothetical protein RHA1_ro06521 7020701 - 7021312 + | hypothetical protein TERM 2501 7021591 - 7021537 - g 82 -16.5 -3.25223 | gap 1 GAGCGACATCAGTAA TACACCCGCCGGCGGCGAGGAGGA TCATGCTT CCCTCCTCGCCGCCCTCG-GCGTA GAAATCGAGCCTTCG rnc 7021517 - 7022275 + | ribonuclease III RHA1_ro06524 7023786 - 7023088 - | hypothetical protein RHA1_ro06523 7022268 - 7023146 + | formamidopyrimidine-DNA glycosylase RHA1_ro06525 7023940 - 7024380 + | hypothetical protein RHA1_ro06526 7024380 - 7025309 + | hypothetical protein acyP 7025315 - 7025584 + | acylphosphatase TERM 2502 7028173 - 7028132 - g 79 -15 -3.29461 | gap 1, overlap 7028120 GAAGGCGCGCCAGAA CGCGGCCGCGGTCGCGGCG GCGGT CGCCGAGTCCG-GGCAGCG GGTGGCCGAGCACCT RHA1_ro06528 7025607 - 7029212 + | chromosome partition protein RHA1_ro06529 7029279 - 7030682 + | cell division protein RHA1_ro06530 7030894 - 7032261 + | ammonium transporter glnB 7032266 - 7032604 + | nitrogen regulatory protein P-II TERM 2503 7032625 - 7032666 + G 100 -31.7 -3.05463 | opp_overlap 7032625 7032657 ACGGGTCCGGTAAGA CCGGCCCTGGTCCCGTCGC CAAG GCGACGGAACCAGGGCCGG TTGCGTCAGGCGGAT TERM 2504 7032666 - 7032625 - g 100 -33.9 -3.01791 | opp_overlap 7032625, overlap 7032657 ACGGGTCCGGTAAGA CCGGCCCTGGTCCCGTCGC CAAG GCGACGGAACCAGGGCCGG TTGCGTCAGGCGGAT glnD 7032594 - 7035146 + | PII uridylyl-transferase RHA1_ro06533 7035223 - 7036809 + | signal recognition particle protein RHA1_ro06534 7036813 - 7037898 + | hypothetical protein rpsP 7038078 - 7038539 + | 30S ribosomal protein S16 RHA1_ro06536 7038536 - 7038778 + | hypothetical protein TERM 2505 7038985 - 7038941 - g 75 -16.3 -2.94416 | opp_overlap 7038951, overlap 7038943 GACTGTGAGCACATA CACGGTGGAAGCCGCCCGGGA CCA TTCCGGGCGGCTTCTGCTGCG CCTCGAGGGTGTGTC TERM 2506 7038983 - 7038943 - g 74 -15.3 -3.02471 | opp_overlap 7038951, overlap 7038941 CTGTGAGCACATACA CGGTGGAAGCCGCCCGGGA CCA TTCCGGGCGGCTTCTGCTG CGCCTCGAGGGTGTG TERM 2507 7038951 - 7038975 + G 93 -19.3 -3.41051 | opp_overlap 7038943 7038941 ACATACACGGTGGAA GCCGCCCGGGA CCA TTCCGGGCGGC TTCTGCTGCGCCTCG rimM 7038792 - 7039343 + | 16S rRNA-processing protein trmD 7039354 - 7040046 + | tRNA (guanine-N(1)-)-methyltransferase RHA1_ro06539 7041076 - 7040072 - | lipoprotein RHA1_ro06540 7041182 - 7043518 + | RNA binding protein TERM 2508 7043623 - 7043646 + G 82 -6.6 -4.77036 | GATCGGGAAATCGTC GGGCACGGGC GCCT GCCTCTGCTC TTTTTCCTGCTCGGG TERM 2509 7043817 - 7043862 + G 74 -12.6 -3.63515 | gap 1, opp_overlap 7043843 GGTCTCCCTCATCGC CGTGTACGAGGACGGCACC CAGACCACC GGCGCCGTCCTCGC-CACG TTCTTCGGGGTCGGC RHA1_ro06541 7043587 - 7044498 + | hypothetical protein rplS 7044593 - 7044934 + | 50S ribosomal protein L19 TERM 2510 7044939 - 7044984 + F 100 -26.3 -3.737 | opp_overlap 7044922, overlap 7044942 AAAAGCGCTGACCTT TCCGATGAGCCCGGCACTGCG TAGT CGCAGTGCCGGGCTAATCTGA TTTCGTGACAGATTC TERM 2511 7044942 - 7044981 + F 100 -26.6 -2.96695 | overlap 7044939 AGCGCTGACCTTTCC GATGAGCCCGGCACTGCG TAGT CGCAGTGCCGGGCTAATC TGATTTCGTGACAGA lepB 7045016 - 7045798 + | signal peptidase I rnhB 7045795 - 7046475 + | ribonuclease HII RHA1_ro06545 7046513 - 7046830 + | hypothetical protein RHA1_ro06546 7046865 - 7047908 + | hypothetical protein RHA1_ro06547 7049308 - 7047965 - | major facilitator transporter RHA1_ro06548 7051023 - 7049305 - | hypothetical protein TERM 2512 7051239 - 7051226 - gH 71 -2.3 -4.59089 | overlap 7051227 GAATGCAGAAAGAAA TCGAG AAAT CTCGG GGCATCATGACTGTC RHA1_ro06549 7051003 - 7052148 + | transcriptional regulator RHA1_ro06550 7052202 - 7053074 + | hydride transferase RHA1_ro06551 7053285 - 7053641 + | hypothetical protein RHA1_ro06552 7053905 - 7055149 + | magnesium chelatase, C-terminal RHA1_ro06553 7055444 - 7055860 + | Smf protein RHA1_ro06554 7055865 - 7057607 + | integrase TERM 2513 7058629 - 7058658 + F 100 -15.7 -4.84017 | TTACTTGATCGAGAG CCCCGGTCTGCTG GTCA TGGCAGGCCGGGG TTTTTCTCGGCCCTT RHA1_ro06555 7058836 - 7059144 + | hypothetical protein RHA1_ro06556 7059137 - 7059994 + | hypothetical protein TERM 2514 7060020 - 7060040 + F 100 -11.1 -4.72272 | GACGTACCCACCCGA GGCCCCG CCAACAA CGGGGCC TTTTTGCTGCCCGGA RHA1_ro06557 7060320 - 7060535 + | hypothetical protein RHA1_ro06558 7060532 - 7061029 + | hypothetical protein TERM 2515 7061155 - 7061130 - f 71 -11.8 -3.20435 | opp_overlap 7061130 CGAATCACCCATCAA GGCCTCTGGC AATCGA GCCAGGGGCC TTTCTCATGTCCAGG TERM 2516 7061130 - 7061155 + F 93 -14 -4.0162 | opp_overlap 7061130 CGAATCACCCATCAA GGCCTCTGGC AATCGA GCCAGGGGCC TTTCTCATGTCCAGG RHA1_ro06559 7061179 - 7062006 + | phage capsid protein TERM 2517 7062064 - 7062102 + F 72 -11.7 -3.53012 | gap 1, opp_overlap 7062062 TGACAACTGAATACG CCGCTGGGGGGGTCGTTC TTCG GGACGGCCCCCT-GGTGG TTTCCAGACCAACGA RHA1_ro06560 7062193 - 7062447 + | hypothetical protein RHA1_ro06561 7062466 - 7062792 + | hypothetical protein TERM 2518 7063172 - 7063182 + F 85 -5.4 -5.0133 | overlap 7063167 CATCACGTGCGGTTT TCAG AAC CTGA TTTTTTCACCAGATG RHA1_ro06562 7063247 - 7063543 + | hypothetical protein RHA1_ro06563 7063561 - 7063953 + | hypothetical protein RHA1_ro06564 7064024 - 7064428 + | hypothetical protein RHA1_ro06565 7064428 - 7064703 + | hypothetical protein RHA1_ro06566 7065090 - 7064767 - | hypothetical protein RHA1_ro06567 7065566 - 7065087 - | hypothetical protein TERM 2519 7065782 - 7065734 - g 83 -14.5 -3.60627 | gap 1, opp_overlap 7065733 7065736, overlap 7065711 CGACGGCAGGCCAAA GGCCCGCACCGCGCCCCCAGGG ATTGCG CCCTGGGAG-ACGGAACGGGTC GTTAGCTGACGCGGT RHA1_ro06568 7065688 - 7066101 + | hypothetical protein RHA1_ro06569 7066161 - 7066598 + | hypothetical protein RHA1_ro06570 7067091 - 7068638 + | propionyl-CoA carboxylase beta subunit TERM 2520 7068761 - 7068777 + G 72 -13.7 -3.13403 | overlap 7068759 GACCGAATGGCTGAC CCCGCAC ATG GTGCGGG TATTCCTCGGCGACC RHA1_ro06571 7068711 - 7069490 + | hypothetical protein RHA1_ro06572 7070678 - 7069509 - | major facilitator superfamily multidrug resistance protein TERM 2521 7070711 - 7070731 + r 70 -7.5 -4.03234 | opp_overlap 7070711 GCTGCACAAAAGAAC TCTAGCGGC GCG GCTGCTTGA TTTATCTCCCGCCCG RHA1_ro06573 7071005 - 7070733 - | hypothetical protein RHA1_ro06574 7072960 - 7071011 - | hypothetical protein TERM 2522 7072999 - 7073024 + H 75 -3.9 -4.68994 | gap 1, overlap 7073001 7073003 GCGGGCCGAACGTCC GACCGGGA-CAC CTG GTGATCCCTGGC TTTTTGAGTGGTCGT RHA1_ro06575 7073122 - 7073772 + | hypothetical protein RHA1_ro06577 7074677 - 7073913 - | hypothetical protein RHA1_ro06576 7073801 - 7074274 + | hypothetical protein rpsB 7074995 - 7075897 + | 30S ribosomal protein S2 TERM 2523 7075909 - 7075941 + F 100 -20.7 -3.59738 | CTGATCCGATGCACA CGGCCCTGACCAGAG ATC TTTTGGTCAGGGCCG TTTCACGGTCTGGTC tsf 7076010 - 7076837 + | elongation factor Ts pyrH 7077012 - 7077740 + | uridylate kinase frr 7077822 - 7078379 + | ribosome recycling factor cdsA 7078414 - 7079328 + | phosphatidate cytidylyltransferase TERM 2524 7079634 - 7079676 + G 75 -8.2 -4.20516 | overlap 7079636 CCGAGGGCATACCCC TGGGCGACGCGAGCGTGGAC GTC GTGCACGCGCGGACCGCCTA TTTCTTCGGTCCCGG TERM 2525 7080025 - 7079969 - g 75 -16.6 -2.87132 | opp_overlap 7079971 7080019, overlap 7080016 GCGTTCGCGCAGACA CCCGGCGTGGCTCTCGACGTGCGT-TAC CGC GTGCACGTCCGCCGAAAGCC-CGCCGGG CTGCAGATTCTCTGA RHA1_ro06583 7079339 - 7080040 + | hypothetical protein RHA1_ro06584 7080890 - 7080051 - | citryl-CoA lyase beta subunit RHA1_ro06585 7081417 - 7080986 - | hypothetical protein TERM 2526 7081649 - 7081618 - g 74 -16.6 -2.71364 | gap 1 GGAGGCCGTCAAGGA GCTGGGTCTGCCCGG GTT CCGGGCCGACC-AGC TGGCCCGGCAGTACT RHA1_ro06586 7081514 - 7082623 + | hypothetical protein TERM 2527 7082649 - 7082688 + TF 86 -15.9 -3.28537 | gap 2, opp_overlap 7082624 7082649 7082654, overlap 7082654 AACAGGCCGAAACGA CGAAACCCCTCGTTCCCGA GTGA TCGGG-GCGAGGGGTT-CG TTCGTGGTTCGGTGT TERM 2528 7082688 - 7082649 - Tf 75 -13.7 -2.92439 | gap 2, opp_overlap 7082649 7082654, overlap 7082624 7082654 AACAGGCCGAAACGA CGAAACCCCTCGTTCCCGA GTGA TCGGGG-CGAGGGGTT-CG TTCGTGGTTCGGTGT TERM 2529 7082654 - 7082684 + TF 90 -15.5 -3.43151 | gap 1, opp_overlap 7082624 7082649 7082654, overlap 7082649 GCCGAAACGACGAAA CCCCTCGTTCCCGA GTGA TCGGG-GCGAGGGG TTCGTTCGTGGTTCG TERM 2530 7082684 - 7082654 - Tf 86 -13.3 -3.8901 | gap 1, opp_overlap 7082654 7082649, overlap 7082624 7082649 GCCGAAACGACGAAA CCCCTCGTTCCCGA GTGA TCGGGG-CGAGGGG TTCGTTCGTGGTTCG RHA1_ro06587 7083071 - 7082703 - | hypothetical protein dxr 7083054 - 7084250 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase RHA1_ro06589 7084257 - 7085477 + | membrane-associated Zn-dependent protease ispG 7085543 - 7086676 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase RHA1_ro06591 7086771 - 7087607 + | acetyltransferase RHA1_ro06592 7087661 - 7089475 + | penicillin-binding protein RHA1_ro06593 7089567 - 7089938 + | hypothetical protein RHA1_ro06594 7089940 - 7090437 + | AraC family transcriptional regulator RHA1_ro06595 7090434 - 7090862 + | hypothetical protein RHA1_ro06596 7092300 - 7090879 - | cationic amino acid transporter RHA1_ro06597 7093221 - 7092355 - | LuxR family transcriptional regulator TERM 2531 7093181 - 7093125 - G 78 -16.5 -3.01712 | gap 1 CCTCGCCGCCGAACA GGACCGGCGCAACGCCGTGAGCTGCG ATGGAG CGCAGCTCACCGCGAAGCG-CGTCCC CGTCCCGAGGGCGCA TERM 2532 7094616 - 7094628 + G 75 -4.7 -4.60292 | overlap 7094621 GCGACGCGGGGCAGA CCGAC GAG GACGG TTTCTTCTTCTTCTC TERM 2533 7094899 - 7094860 - g 74 -12.1 -3.61715 | opp_overlap 7094863, overlap 7094863 GACGCTGGTGAAGAA GAAGTTCGCGGCGCACG CCTACC CGCGCACCGTGCACTTC GTCCCCAACCTGCCG RHA1_ro06598 7093340 - 7094962 + | acetate--CoA ligase RHA1_ro06599 7095774 - 7095025 - | ABC transporter, permease component RHA1_ro06600 7096690 - 7095785 - | ABC transporter, permease component RHA1_ro06601 7097856 - 7096687 - | iron ABC transporter ATP-binding protein RHA1_ro06602 7098896 - 7097859 - | iron ABC transporter permease TERM 2534 7098991 - 7099002 + G 72 -4.4 -4.62336 | opp_overlap 7098991 CGGCAGGTGAACAAT TGGT ATAG ACCA TTTTTCGGGTACGCT RHA1_ro06603 7098982 - 7099788 + | transcriptional regulator RHA1_ro06604 7099997 - 7100707 + | methionyl aminopeptidase RHA1_ro06605 7100704 - 7102242 + | cobyric acid synthase RHA1_ro06606 7102937 - 7102239 - | ABC transporter permease RHA1_ro06607 7103839 - 7102934 - | ABC transporter, ATP-binding component RHA1_ro06608 7104301 - 7104867 + | hypothetical protein RHA1_ro06609 7105227 - 7104898 - | hypothetical protein RHA1_ro06610 7106609 - 7105224 - | mycothione/glutathione reductase RHA1_ro06611 7107616 - 7106606 - | hypothetical protein RHA1_ro06612 7107738 - 7109282 + | malate:quinone oxidoreductase TERM 2535 7109694 - 7109636 - g 73 -16.8 -2.62983 | gap 3, opp_overlap 7109606 GTCAGGGGCACACGA CGCGTCTGCTGC-GCGCCGCGC-TCGCCG AGGT CGGCGACGCGCCGTGCCGCATCA-ACGCG CAGACGTATCTGGTG RHA1_ro06613 7109338 - 7109868 + | hypothetical protein RHA1_ro06614 7110062 - 7111993 + | magnesium chelatase RHA1_ro06615 7112037 - 7112651 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2536 7113411 - 7113454 + G 95 -17.4 -3.76125 | gap 1 AGGCCGGGCCGATTC TCCCCGGCCCTCGCCCGGTCG TGG CGATCGC-CGGGGGCCGGGCA TTTACGTTCGGGTAC cobB 7112648 - 7114045 + | cobyrinic acid a,c-diamide synthase TERM 2537 7115631 - 7115671 + G 82 -8.2 -4.52857 | opp_overlap 7115624 7115631, overlap 7115632 TGAAGGAAGAGCAGA TCCGGCCGCCCGCC ATCGTGGTCATCG GGCCGGTGGCCGGG TTTTCTGTGGACGCT RHA1_ro06617 7114466 - 7115692 + | uroporphyrin-III C-methyltransferase TERM 2538 7116561 - 7116582 + G 74 -12.3 -3.62597 | opp_overlap 7116555 CCGCGACAAGAACCG GGTCGCGAC GCTC GTCGCGATC TTCTTCGCCGGTGCC RHA1_ro06618 7115704 - 7117227 + | major facilitator superfamily multidrug transporter RHA1_ro06619 7117284 - 7117655 + | lyase RHA1_ro06620 7117759 - 7118484 + | hypothetical protein RHA1_ro06621 7119168 - 7118494 - | response regulator TERM 2539 7118709 - 7118731 + g 82 -13.4 -3.68222 | CGGCGCTGAGCCCCT TCGGGAGCCG GCT CGGCTCCGGA TTCTTGCCCTTGCCG RHA1_ro06622 7120815 - 7119199 - | sensory histidine kinase RHA1_ro06623 7120883 - 7121872 + | hypothetical protein TERM 2540 7121911 - 7121873 - g 77 -17.5 -2.62184 | gap 1, opp_overlap 7121887, overlap 7121887 TTGGGGCTGACATGA CCGCGCCCGCAGA-ACCG TCCG CAGTCTCCGCGGACGCGG CCCCGGCGCCGAAGC RHA1_ro06624 7121869 - 7122408 + | integral membrane protein TERM 2541 7122754 - 7122706 - g 95 -18.8 -3.65522 | opp_overlap 7122703 7122750 GATCGAGGGCAACAA GATGGCGAAGGCCGGCAGGGCC GCGCA GGCCCTGGCGACCGCCGCGATC GGGTCGTTCGTCGCC RHA1_ro06625 7122410 - 7123969 + | hypothetical protein RHA1_ro06626 7123966 - 7124352 + | stress protein TERM 2542 7124408 - 7124352 - T 93 -19.3 -3.06261 | gap 3, overlap 7124354 7124395 CGTCAAGCCCGAATA GAGCTG--CTGTGAGTACTTATCAACCG CCGG CGGTTGATAAGTACTCACAGGTCAG-TC GGTGAGGATGATCAG TERM 2543 7124407 - 7124354 - T 89 -18.6 -3.08867 | gap 2, overlap 7124352 7124395 TCAAGCCCGAATAGA GCTG--CTGTGAGTACTTATCAACCG CCGG CGGTTGATAAGTACTCACAGGTCAGT CGGTGAGGATGATCA RHA1_ro06627 7125146 - 7124403 - | hypothetical protein proS2 7125203 - 7126948 + | prolyl-tRNA synthetase TERM 2544 7126963 - 7127011 + F 100 -23.5 -3.26319 | gap 1 ATCAAACCGCCCCAC GCCTTTCGTCCGGAC-TGTTAG CTTGGC CTGACACGTCCGGACGAAAGGC TTGCTGTGACGAATT RHA1_ro06629 7127017 - 7128747 + | acyl-CoA dehydrogenase TERM 2545 7128786 - 7128837 + G 77 -11.4 -3.88232 | overlap 7128774 7128787 GGCGTCATCCCTCGG GGTGCCGGTTGCGCCCCCTGGGGT GCCT GTTCCGGTGGGTGCGATCGGCGCA TTCTTATGTGGCAAG TERM 2546 7128787 - 7128836 + G 72 -14.9 -2.92618 | overlap 7128774 7128786 GCGTCATCCCTCGGG GTGCCGGTTGCGCCCCCTGGGGT GCCT GTTCCGGTGGGTGCGATCGGCGC ATTCTTATGTGGCAA RHA1_ro06630 7128764 - 7129297 + | hypothetical protein TERM 2547 7129369 - 7129329 - f 100 -24.8 -3.02144 | gap 1 CGATCTTGCTGAACA GC-CCGAGGGGCCGTCACC GCCA GGTGCCGGCCCCTCGGCGC CACGCCTGTACCACC RHA1_ro06631 7129427 - 7129720 + | hypothetical protein RHA1_ro06632 7129989 - 7130447 + | heat shock protein RHA1_ro06633 7130665 - 7131627 + | hydrolase RHA1_ro06634 7132275 - 7131628 - | forkhead domain-containing protein RHA1_ro06635 7132932 - 7132333 - | TetR family transcriptional regulator TERM 2548 7133851 - 7133861 + G 75 -8.2 -4.13767 | ACCCTTCCCCGTGAT GCCG CTG CGGC TTTTCCGGTCCCGGC RHA1_ro06636 7133036 - 7134481 + | major facilitator superfamily multidrug resistance protein TERM 2549 7134497 - 7134528 + T 100 -23 -2.52464 | CCCTCCCGGAGTGCG GGCGGGCCCGGACC GTGA GGTCCGGGCCCGCA TCAGTTCCAGGGCGG RHA1_ro06637 7135527 - 7134700 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro06638 7136009 - 7135524 - | hypothetical protein RHA1_ro06639 7136554 - 7136111 - | hypothetical protein RHA1_ro06640 7137129 - 7136551 - | hypothetical protein RHA1_ro06641 7137265 - 7137837 + | hypothetical protein nusA 7137834 - 7138865 + | transcription elongation factor NusA RHA1_ro06643 7138910 - 7139263 + | hypothetical protein infB 7139369 - 7142311 + | translation initiation factor IF-2 RHA1_ro06645 7142413 - 7142703 + | hypothetical protein rbfA 7142818 - 7143306 + | ribosome-binding factor A RHA1_ro06647 7143318 - 7144319 + | phosphoesterase RHA1_ro06648 7144332 - 7145720 + | DNA-damage-inducible protein F ( multi anti extrusion protein MatE) RHA1_ro06649 7145722 - 7146651 + | metallophosphoesterase RHA1_ro06650 7146648 - 7147331 + | phosphopantetheinyl transferase truB 7147394 - 7148311 + | tRNA pseudouridine synthase B RHA1_ro06652 7149047 - 7148316 - | Fe(2+)-dependent transcriptional regulator ribF 7149170 - 7150180 + | bifunctional riboflavin kinase/FMN adenylyltransferase rpsO 7150291 - 7150560 + | 30S ribosomal protein S15 TERM 2550 7150650 - 7150593 - f 71 -10.3 -3.60296 | opp_overlap 7150596, overlap 7150596 CATTTCGATCGCAAA TCACTCCGGTAGCCGGCGGGGCCTTGC TTAG ACTGGGCCTCGCTGGCTATCGGCGTTA GCTGCCGAGGGCAGC TERM 2551 7150596 - 7150647 + F 100 -20.1 -3.05384 | opp_overlap 7150596 7150593 TTCGATCGCAAATCA CTCCGGTAGCCGGCGGGGCCTTG CTTAGA CTGGGCCTCGCTGGCTATCGGCG TTAGCTGCCGAGGGC TERM 2552 7150710 - 7150734 + F 76 -14.3 -3.05384 | CGGTCTTCGGTAGTG GTCTTCCGGAC ACG GTCCGGGGGAC TTCGATCGACGGCCG RHA1_ro06655 7150873 - 7153146 + | polynucleotide phosphorylase/polyadenylase TERM 2553 7153162 - 7153206 + T 100 -27.9 -3.27022 | overlap 7153164 CCTTCTCCCGGTCCT CACGCCGGCGACCCCGCACGA ATC TCGTGCGGGGCCGTCGGCGTC TTCGTGTGGGGTGGG TERM 2554 7153164 - 7153204 + T 100 -30.5 -3.20078 | overlap 7153162 TTCTCCCGGTCCTCA CGCCGGCGACCCCGCACGA ATC TCGTGCGGGGCCGTCGGCG TCTTCGTGTGGGGTG RHA1_ro06656 7153665 - 7153222 - | hypothetical protein RHA1_ro06657 7154437 - 7153676 - | 2-phosphosulfolactate phosphatase RHA1_ro06658 7155348 - 7154434 - | LysR family transcriptional regulator TERM 2555 7155497 - 7155519 + G 72 -14.8 -2.85351 | GCCGACGGGCAATCC GGACCGCCGA CTC TCGGCGGCCC TGTGGTGTGCCGGCG RHA1_ro06659 7155360 - 7156658 + | major facilitator superfamily drug transporter RHA1_ro06660 7158009 - 7156948 - | methyltransferase RHA1_ro06661 7158223 - 7158678 + | hypothetical protein RHA1_ro06662 7158730 - 7159083 + | hypothetical protein RHA1_ro06663 7159520 - 7159149 - | hypothetical protein RHA1_ro06664 7176042 - 7159552 - | non-ribosomal peptide synthetase TERM 2556 7160637 - 7160592 - G 74 -16.1 -2.75891 | gap 1, overlap 7160589 ACACCCAGGCAACGA CCCCCTCCACCGCCGTGACCGG CGC CCGGT-ACTGCGGTGTCGGGAG CACCGGGGTGGGTAG TERM 2557 7161589 - 7161569 - G 71 -11.1 -3.63744 | overlap 7161567 TTGCTCTGCAAAAGA CGGTCACCG GCA CGGTGATCG AACGCCTCGACCACC TERM 2558 7163154 - 7163167 + g 73 -8.1 -4.10657 | GGTGCAGCACCACGG CGAGC ACGT GCTCG TTTTCGGCCGTCTCG RHA1_ro06665 7178926 - 7176044 - | anthranilate synthase component II and I/ aminodeoxychorismate synthase TERM 2559 7179146 - 7179173 + H 71 -7.6 -4.07687 | GCCAAGCCATGAAGT CCGCCCGTGCCA GCGA TGGTGCGGATGG TTTTCACCAAGACCT TERM 2560 7179214 - 7179186 - H 80 -14.6 -3.13403 | overlap 7179184 TGGTTTTCACCAAGA CCTCTCGACGTG TCGGC CCCGTCGAGAGG CTCCGCCGACCTGAG RHA1_ro06666 7179715 - 7180035 + | hypothetical protein RHA1_ro06667 7180619 - 7180239 - | hypothetical protein RHA1_ro06668 7182369 - 7180663 - | helicase RHA1_ro06669 7182657 - 7182379 - | hypothetical protein TERM 2561 7182857 - 7182815 - H 71 -10.2 -3.57144 | overlap 7182816 TCCCGCATGGGGAAA TCGCGGCCGCCCGGGCCGGC ACG GCCGTCACGGGCTGACGGGG TTCCGGACATCGTGG TERM 2562 7182856 - 7182816 - H 71 -13.7 -2.74144 | overlap 7182815 CCCGCATGGGGAAAT CGCGGCCGCCCGGGCCGGC ACG GCCGTCACGGGCTGACGGG GTTCCGGACATCGTG RHA1_ro06670 7183019 - 7183858 + | hypothetical protein TERM 2563 7184377 - 7184348 - T 91 -17.9 -3.29947 | opp_overlap 7184348 7184350 CATGCAGTACAGGAA CACGACCCCCTCC GGCG GGAGGCGGTCGTG TCGTTGGGGTCAGGG TERM 2564 7184348 - 7184377 + T 84 -17.9 -2.73364 | opp_overlap 7184348, overlap 7184350 CATGCAGTACAGGAA CACGACCCCCTCC GGCG GGAGGCGGTCGTG TCGTTGGGGTCAGGG TERM 2565 7184350 - 7184375 + T 77 -14.7 -2.91274 | opp_overlap 7184348, overlap 7184348 TGCAGTACAGGAACA CGACCCCCTCC GGCG GGAGGCGGTCG TGTCGTTGGGGTCAG RHA1_ro06671 7184866 - 7184393 - | permease RHA1_ro06672 7185541 - 7185975 + | hypothetical protein RHA1_ro06673 7185981 - 7186478 + | hypothetical protein RHA1_ro06674 7186481 - 7187458 + | oxidoreductase RHA1_ro06675 7187480 - 7188436 + | hypothetical protein RHA1_ro06676 7188439 - 7188723 + | hypothetical protein RHA1_ro06677 7188997 - 7189293 + | hypothetical protein RHA1_ro06678 7189495 - 7190964 + | aldehyde dehydrogenase (NAD+) RHA1_ro06679 7191070 - 7192686 + | cyclohexanone monooxygenase RHA1_ro06680 7192732 - 7193637 + | hydrolase TERM 2566 7193698 - 7193741 + F 100 -24 -3.35813 | overlap 7193699 CAAGAGGTGAAGGTG TTCGTCGGCGGCGGTCTACA CGGG TCTGGACCGCCGCCGACGAG TTCGTTCGCGTGCCG TERM 2567 7193699 - 7193740 + F 100 -25.3 -2.61274 | overlap 7193698 AAGAGGTGAAGGTGT TCGTCGGCGGCGGTCTACA CGGG TCTGGACCGCCGCCGACGA GTTCGTTCGCGTGCC RHA1_ro06681 7193810 - 7194610 + | enoyl-CoA hydratase TERM 2568 7194667 - 7194629 - T 84 -14.7 -3.32997 | opp_overlap 7194629, overlap 7194624 7194632 GCCCGAGAAACCGAA GAACTCCGTGGATGC GAATTGGAT GCTTCCACGGAGTTC TTTTTTCTTGTCTGC TERM 2569 7194629 - 7194667 + T 100 -15.4 -5.60689 | opp_overlap 7194629 7194624 7194632 GCCCGAGAAACCGAA GAACTCCGTGGATGCG AATTGGA TGCTTCCACGGAGTTC TTTTTTCTTGTCTGC TERM 2570 7194664 - 7194632 - T 74 -10.6 -3.80019 | opp_overlap 7194629, overlap 7194629 7194624 CGAGAAACCGAAGAA CTCCGTGGATGC GAATTGGAT GCTTCCACGGAG TTCTTTTTTCTTGTC RHA1_ro06682 7195750 - 7194722 - | acyl-CoA dehydrogenase TERM 2571 7195222 - 7195198 - G 81 -4.4 -4.82901 | overlap 7195199 7195200 CGCCCCGCAGAAAAA GTTGTCGGA-TC ACC GAGTCCGACA-C TGGGGTCCCCGACAA TERM 2572 7195378 - 7195408 + g 75 -10.3 -4.03078 | gap 1, overlap 7195378 CGATCTTGTCTGCCT GG-GACGCCCACGG CACG CCGCGGGCGACGCC TTTCTCGTCTAGTAC TERM 2573 7195729 - 7195697 - G 75 -8.5 -4.13767 | gap 1, opp_overlap 7195723, overlap 7195700 CCGGTGAGCGGAAAA GACCGCGGACATCA TGTCGG TGAGGTCCGCG-TC GACCGTGGTTGGTGC RHA1_ro06683 7196847 - 7195750 - | acyl-CoA dehydrogenase TERM 2574 7196839 - 7196818 - G 75 -8.7 -4.15044 | CTGCTCGGCAAGAAA CTCACGGAC TTCG GTCCGCAAG TCGTCCATGGCGTGT RHA1_ro06684 7197473 - 7196910 - | acyl-CoA transferases/carnitine dehydratase, C-terminal RHA1_ro06685 7197986 - 7197501 - | acyl-CoA transferases/carnitine dehydratase, N-terminal RHA1_ro06686 7198139 - 7198894 + | IclR family transcriptional regulator RHA1_ro06687 7199851 - 7198919 - | esterase TERM 2575 7199964 - 7199941 - H 72 -8.8 -4.08767 | opp_overlap 7199921 7199942, overlap 7199942 7199944 7199948 GGGAGTGTCCGAAAA TCACACACGC ATCC GCGCGTGTGT TTCACAATCGGACAC TERM 2576 7199942 - 7199963 + H 71 -10.1 -3.57144 | opp_overlap 7199942 7199941 7199944 7199948, overlap 7199921 GGAGTGTCCGAAAAT CACACACGC ATCC GCGCGTGTG TTTCACAATCGGACA RHA1_ro06688 7200063 - 7200803 + | hydrolase RHA1_ro06689 7200878 - 7201180 + | hypothetical protein TERM 2577 7201174 - 7201230 + F 100 -26.7 -2.90992 | opp_overlap 7201166 7201182, overlap 7201175 GATCGAATTCGCCTC GCGATAGACGCGACCGGACCGTCGTTC GTC GAACGACGGTCCGGTCGACAGTATCGC TCGTTTCCGAAAGTT TERM 2578 7201175 - 7201233 + F 84 -14.2 -3.56099 | gap 4, opp_overlap 7201166 7201182, overlap 7201174 ATCGAATTCGCCTCG CGA-T-AGAC-G-CGACCGGACCGTCGTTC GTC GAACGACGGTCCGGTCGACAGTATCGCTCG TTTCCGAAAGTTGTG TERM 2579 7201223 - 7201182 - f 100 -26.1 -2.87132 | gap 1, opp_overlap 7201174 7201175 TCGCCTCGCGATAGA CG-CGACCGGACCGTCGTTC GTC GAACGACGGTCCGGTCGACA GTATCGCTCGTTTCC RHA1_ro06690 7201254 - 7202180 + | NADH pyrophosphatase RHA1_ro06691 7204047 - 7202221 - | transcriptional regulator RHA1_ro06692 7205784 - 7204138 - | acyl-CoA synthetase TERM 2580 7206793 - 7206838 + G 77 -11.2 -3.8211 | gap 3, overlap 7206766 7206794 7206794 CAGCACCGCACCCGA C-GGG-GTGTTCGCCGTCG-CGC TCG GCGGCGACGACGGACGCACCCTG TTCTTGTGCGTCGCA TERM 2581 7206794 - 7206835 + G 70 -15.1 -2.69259 | gap 1, overlap 7206766 7206793 7206794 AGCACCGCACCCGAC GGGGTGTTCGCCGTCG-CGC TCG GCGGCGACGACGGACGCACC CTGTTCTTGTGCGTC TERM 2582 7206794 - 7206836 + G 82 -14.9 -3.49568 | gap 2, overlap 7206766 7206794 7206793 AGCACCGCACCCGAC GGG-GTGTTCGCCGTCG-CGC TCG GCGGCGACGACGGACGCACCC TGTTCTTGTGCGTCG RHA1_ro06693 7206044 - 7206943 + | 5-valerolactone hydrolase TERM 2583 7206946 - 7206989 + F 83 -15.3 -3.28708 | gap 1 CGGCCGCCCCTGACC CTCCGGATCCCGCTGTGGAA CCCTC TCCCGCAGCGGG-TCCGGCG TTGATCTCACATTTC RHA1_ro06694 7207026 - 7208012 + | 2-nitropropane dioxygenase RHA1_ro06695 7208009 - 7208917 + | enoyl-CoA hydratase RHA1_ro06696 7208997 - 7209509 + | hypothetical protein RHA1_ro06697 7209962 - 7209480 - | acyl-CoA dehydrogenase RHA1_ro06698 7210273 - 7211910 + | cyclohexanone monooxygenase RHA1_ro06699 7212503 - 7211964 - | hypothetical protein TERM 2584 7212367 - 7212331 - G 74 -11.5 -3.73224 | GCATTTCGCACGAAA CCTGTTGGCGCACGTCC ACA AGTCGCACGCCAACATG GTCGCCGCCGTGTTC RHA1_ro06700 7213157 - 7212708 - | hypothetical protein RHA1_ro06701 7214145 - 7213162 - | thioredoxin reductase TERM 2585 7213709 - 7213665 - G 90 -20 -3.13403 | gap 1, opp_overlap 7213692, overlap 7213663 GGCCGGCGAGGAAGA CGGTGGCC-TGGCCGGCGGAG TTTC CGCCGCCGACGATGGCCACCG GATCGGTGCCGCACA RHA1_ro06702 7215130 - 7214864 - | hypothetical protein RHA1_ro06703 7215579 - 7215127 - | thioredoxin TERM 2586 7215457 - 7215507 + g 73 -7.6 -4.18018 | gap 3, overlap 7215496 CGCGAAGTCGTCGTC CCCTGCCGCGGCGA-T-CCACG-GC AGCG GCTCGTGGCAGTTCCCGCAGCGGGG TTTTCCGTCCCCGGC RHA1_ro06704 7215836 - 7215594 - | hypothetical protein clpB2 7218227 - 7215858 - | ATP-binding subunit of heat shock protein ClpB RHA1_ro06706 7218538 - 7218209 - | hypothetical protein dnaJ3 7219461 - 7218535 - | chaperone protein grpE2 7219992 - 7219468 - | heat shock protein GrpE dnaK2 7221881 - 7220001 - | heat shock protein Hsp70 RHA1_ro06710 7222388 - 7221885 - | hypothetical protein RHA1_ro06711 7222752 - 7223885 + | transposase RHA1_ro06712 7224518 - 7225534 + | serine protease RHA1_ro06713 7225648 - 7226850 + | hypothetical protein RHA1_ro06715 7227705 - 7228172 + | hypothetical protein RHA1_ro06716 7229915 - 7228911 - | hypothetical protein TERM 2587 7229990 - 7230000 + H 72 -6.8 -4.26903 | TGGGCTTGTCTACTC CGCT ACC AGCG TTTTGATGCGCTAAC RHA1_ro06717 7230149 - 7230595 + | hypothetical protein RHA1_ro06718 7230701 - 7231324 + | hypothetical protein RHA1_ro06719 7232719 - 7231364 - | Mce family protein TERM 2588 7233397 - 7233377 - g 70 -14.7 -2.74563 | TCGATACGGCAACCA TGGCCGCCG AGG CGGCGACCA TGGCGGGTGGCCCCG TERM 2589 7235059 - 7235024 - g 81 -18.5 -2.78816 | gap 1, opp_overlap 7235019 CGACTGCGCACGACA CCGTCGTTCTTC-GCG GGCTG CGCCGAAGAACGACGG TCTACCTGGCGGTGA RHA1_ro06720 7233043 - 7235256 + | protein kinase RHA1_ro06721 7236308 - 7235532 - | hypothetical protein RHA1_ro06722 7236483 - 7237142 + | TetR family transcriptional regulator TERM 2590 7237130 - 7237153 + F 74 -5.2 -4.54047 | gap 1, overlap 7237131 CGAAGAAATCCTCGA CCGCCCG-GTG TGA CATACGGGCGC TTTTGTCTGGAGTAG TERM 2591 7237973 - 7237949 - g 72 -13.5 -3.13343 | overlap 7237953 ACCCGAATCAGCGAA CGCAGCCCCGA GTG CCGCGGCTGCG CGTGGCTACCGGGAC RHA1_ro06723 7237172 - 7238365 + | hypothetical protein TERM 2592 7238816 - 7238758 - g 74 -15.3 -3.01712 | gap 2 CCGTGCGCCGGAAGA CGCGGCC-CGACGA-GACCGGACGCAGCA CCG TGCTGTATCCGGCCATTGCCGAGGCGGCG CGCCGGGTCGGCGCG RHA1_ro06724 7238439 - 7239500 + | hypothetical protein RHA1_ro06725 7239880 - 7239587 - | hypothetical protein TERM 2593 7240253 - 7240290 + H 88 -17.7 -2.98823 | gap 1 CCCGACGTTCGTGCT CG-CGGGCGGCGCCCC CTCATCA GGGACGCCGCCCGACG TGTGTGTGGAACGAC RHA1_ro06726 7240388 - 7240684 + | hypothetical protein RHA1_ro06727 7241653 - 7240691 - | DeoR family transcriptional regulator RHA1_ro06728 7241683 - 7242159 + | dioxygenase RHA1_ro06729 7242159 - 7242764 + | hypothetical protein RHA1_ro06730 7242822 - 7243379 + | hypothetical protein RHA1_ro06731 7243444 - 7244700 + | beta-lactamase RHA1_ro06732 7245092 - 7244697 - | hypothetical protein RHA1_ro06733 7245249 - 7245596 + | methyltransferase TERM 2594 7245743 - 7245725 - g 76 -7.4 -4.25104 | CCGTCCTCAGGAAAA GCGAGC TGATCGG GCTCGC AACCACATCGCCGAC RHA1_ro06734 7245642 - 7247186 + | metalloendopeptidase RHA1_ro06735 7247221 - 7248327 + | zinc-containing alcohol dehydrogenase RHA1_ro06736 7248361 - 7248801 + | hypothetical protein RHA1_ro06737 7249308 - 7248823 - | MarR family transcriptional regulator RHA1_ro06738 7249398 - 7250015 + | hypothetical protein dapB 7250119 - 7250877 + | dihydrodipicolinate reductase RHA1_ro06740 7250874 - 7251353 + | hypothetical protein RHA1_ro06741 7251383 - 7251841 + | hypothetical protein RHA1_ro06742 7251889 - 7253121 + | hypothetical protein RHA1_ro06743 7253560 - 7253126 - | hypothetical protein RHA1_ro06744 7254139 - 7253663 - | hypothetical protein TERM 2595 7254025 - 7254066 + g 78 -17.1 -2.82516 | GGAGGAGCCGGGCGG CGGGTTCGACCGCGGCGGC GAGC GCCGACGCGGTCGCCCGCG TCTGCTCGTCGCCGA RHA1_ro06745 7255081 - 7254167 - | tyrosine-protein phosphatase thyX 7255168 - 7255920 + | FAD-dependent thymidylate synthase dapA3 7255964 - 7256872 + | dihydrodipicolinate synthase TERM 2596 7258780 - 7258740 - g 72 -14 -3.16881 | gap 1 CACCGAGGGCATCAA CGACG-CTCACCGCATCGC CCAG GCGATCCGGCGCGTCGTCG GCAAATGGGTGGCGG RHA1_ro06748 7256869 - 7258863 + | hypothetical protein RHA1_ro06749 7258889 - 7259512 + | hypothetical protein RHA1_ro06750 7259593 - 7262172 + | DNA translocase FtsK TERM 2597 7262343 - 7262375 + F 72 -12.8 -3.14134 | gap 1, opp_overlap 7262322 7262345, overlap 7262341 7262339 CGGCGCGGCGGGAGA GACCTCCGGTA-CCC GCTA GGTCTACCGGAGGTC TGTGTTCATGCATGT RHA1_ro06751 7262383 - 7263366 + | membrane protein TERM 2598 7263390 - 7263341 - T 79 -15 -3.02144 | gap 1, overlap 7263350 CCAGCCTTCTCAAGA CGCGGAACACGACGCC-GGCGCA GTAGT TCCGCCGGGCGTCGTGCTCGGGG TGTCCGGTGCTCGGC RHA1_ro06752 7263693 - 7263409 - | hypothetical protein RHA1_ro06753 7264291 - 7263767 - | N-acetylglutamate synthase RHA1_ro06754 7264469 - 7265071 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RHA1_ro06755 7265068 - 7265568 + | competence damage induced protein RHA1_ro06756 7265640 - 7266026 + | transcriptional regulator RHA1_ro06757 7266184 - 7267011 + | phage shock protein TERM 2599 7267043 - 7267076 + G 82 -19 -2.8547 | gap 1 TGAGTTCCACCCGAG GTGGCCGACCTGGAC GCGCA GTCC-GGTCGGCCAC TGTCGTGTCCGGGCT TERM 2600 7267206 - 7267188 - g 74 -13.1 -3.61398 | overlap 7267189 GCTGCTGCGGAAGAA GCGGCGC GCCCG GCGCCGC GCCAAGCGCTACGGC RHA1_ro06758 7267027 - 7267857 + | hypothetical protein RHA1_ro06759 7268046 - 7268222 + | hypothetical protein RHA1_ro06760 7268239 - 7268955 + | hypothetical protein RHA1_ro06761 7269225 - 7269857 + | TetR family transcriptional regulator TERM 2601 7271210 - 7271184 - g 78 -16.5 -3.05384 | TCGCCCGCTACGGAA CGGAGGCGGCG CTGAT CGCCGCCGCCG ACGCCGAACTGCTGG RHA1_ro06762 7269854 - 7271398 + | glycerol-3-phosphate oxidase RHA1_ro06763 7271426 - 7272574 + | hypothetical protein RHA1_ro06764 7272608 - 7272802 + | hypothetical protein recA 7272948 - 7273991 + | recombinase A TERM 2602 7274030 - 7274058 + G 74 -14 -3.35996 | gap 1, opp_overlap 7274030 CGAAGGTGGAACGGA GACGCAGGC-CAA GGAT TTGTGCCTGCGTC TTCTGACTGACCGTG recX 7274001 - 7274516 + | recombination regulator RecX TERM 2603 7274596 - 7274545 - T 100 -29.7 -2.83255 | opp_overlap 7274550 7274552, overlap 7274568 ACAACACTGACGAGA CGCGACACTGCGGTCGGACGGAA CAGAGT TTCCGTCCGACCGCAGTGTCATG TCACACCCGCGTCAG TERM 2604 7274550 - 7274591 + T 100 -29 -2.62184 | opp_overlap 7274545 7274568, overlap 7274552 ACTGACGAGACGCGA CACTGCGGTCGGACGGAA CAGAGT TTCCGTCCGACCGCAGTG TCATGTCACACCCGC TERM 2605 7274552 - 7274589 + T 100 -25.8 -2.85351 | opp_overlap 7274545 7274568, overlap 7274550 TGACGAGACGCGACA CTGCGGTCGGACGGAA CAGAGT TTCCGTCCGACCGCAG TGTCATGTCACACCC gluD 7275512 - 7274613 - | glutamate transport system permease protein GluD gluC1 7276189 - 7275509 - | glutamate transport system permease protein GluC TERM 2606 7275662 - 7275689 + g 71 -9.8 -3.71848 | CAGCGACGCCTCCGC CACGCCGATCAC CGAG GCGATCGTCGTG TTCTTGGTCAACGCG TERM 2607 7276294 - 7276339 + r 78 -15.4 -2.70932 | overlap 7276296 7276298 TGCTCAGTACCGATC GACGGTCGGCGGGGCGGG GATCGGGTAA CCCGACGCGCCGACTGTC TCGTTGAACGCGCGC gluB1 7277115 - 7276282 - | glutamate-binding protein precursor gluA1 7277925 - 7277197 - | glutamate transport ATP-binding protein GluA RHA1_ro06771 7277995 - 7279653 + | hypothetical protein TERM 2608 7280253 - 7280217 - g 100 -23.8 -3.36273 | gap 1 GCCGCGGAAGAGGAA CGCCGCGCCGCTGCCGC CGAA GCGG-AGCGACGCGGCG ACTGGAACGTCGGCT RHA1_ro06772 7279650 - 7280270 + | hypothetical protein RHA1_ro06773 7281662 - 7280277 - | hypothetical protein RHA1_ro06774 7281866 - 7282582 + | hypothetical protein miaA 7282579 - 7283508 + | tRNA delta(2)-isopentenylpyrophosphate transferase RHA1_ro06776 7283505 - 7284356 + | tRNA/rRNA methyltransferase dapF 7284441 - 7285310 + | diaminopimelate epimerase RHA1_ro06778 7285369 - 7286823 + | GTP-binding protein RHA1_ro06779 7286816 - 7287931 + | hypothetical protein TERM 2609 7289208 - 7289164 - g 86 -19.3 -3.21099 | gap 1, opp_overlap 7289167 7289169, overlap 7289129 7289166 GCGGCGGACGACGAA TACCGCCCGCAGCAGCAGCG GATGTT CGCTGCCGC-GCGGGCGGCC GGTCTGAACGTGCGG TERM 2610 7289206 - 7289166 - g 100 -24.1 -3.17051 | gap 1, opp_overlap 7289167 7289169, overlap 7289129 7289164 GGCGGACGACGAATA CCGCCCGCAGCAGCAGCG GATGTT CGCTGCCGC-GCGGGCGG CCGGTCTGAACGTGC RHA1_ro06780 7287985 - 7289322 + | esterase RHA1_ro06781 7289594 - 7289337 - | phosphotransferase system, histidine-containing phosphocarrier protein RHA1_ro06782 7291754 - 7289652 - | phosphotransferase system, fructose-specific RHA1_ro06783 7292751 - 7291771 - | 1-phosphofructokinase TERM 2611 7292069 - 7292037 - G 82 -14.7 -3.40403 | opp_overlap 7292051 CCTCGGTCACGAGAA CCGCACCCGCGGCGC CGA GCGTCGCGAGGACGG CTTCGACCCCGCGGT RHA1_ro06784 7293626 - 7292748 - | DeoR family transcriptional regulator RHA1_ro06785 7293713 - 7295383 + | phosphoenolpyruvate--protein phosphotransferase TERM 2612 7295485 - 7295470 - f 76 -6 -4.48449 | TGACGAAAAGAGAAA CCGACG CCCC CGACGG TCCGGCCGGTGGCTC RHA1_ro06786 7295577 - 7296782 + | xanthine/uracil permease RHA1_ro06787 7296894 - 7298036 + | long-chain-acyl-CoA dehydrogenase TERM 2613 7298068 - 7298105 + T 100 -32.9 -2.87132 | TATCCGGGGTGGATG CGAGGAGGCCCCACGGC AGTC GCCGTGGGGCCTCCTCG TGTCTCCACGCGGCA RHA1_ro06788 7298856 - 7298125 - | LexA repressor RHA1_ro06789 7299136 - 7299633 + | hypothetical protein RHA1_ro06790 7299649 - 7300278 + | hypothetical protein RHA1_ro06791 7304207 - 7300317 - | ATP-dependent helicase hrpA RHA1_ro06792 7304206 - 7304922 + | hypothetical protein RHA1_ro06794 7306487 - 7305999 - | hypothetical protein RHA1_ro06793 7305019 - 7306098 + | hydrolase RHA1_ro06795 7306488 - 7307852 + | MFS superfamily proline/ betaine transporter bioA2 7307916 - 7309148 + | adenosylmethionine-8-amino-7-oxononanoate transaminase RHA1_ro06797 7309414 - 7309112 - | hypothetical protein RHA1_ro06798 7309598 - 7310149 + | hypothetical protein RHA1_ro06799 7310815 - 7310135 - | phenazine biosynthesis protein RHA1_ro06800 7310927 - 7311850 + | LysR family transcriptional regulator RHA1_ro06801 7312609 - 7311860 - | LysR family transcriptional regulator TERM 2614 7311947 - 7311971 + g 100 -17.1 -3.96068 | CGCGGCCGGTTTCTG GCGTGCCGCCG CCG CGGCGGGACGC TTCTTCTTCGGCTGA TERM 2615 7313068 - 7313030 - g 95 -18.9 -3.54029 | gap 1, opp_overlap 7313033, overlap 7313033 CCGCATCAAGGAGAA GAACGCGGCGCGGCGTGA TCAG CCCCGCCG-GCCGCGTTC CTGACCGCTACCCTT TERM 2616 7313033 - 7313065 + G 72 -14.1 -3.14931 | gap 1, opp_overlap 7313030 7313033 CATCAAGGAGAAGAA CGCGGCGCGGCGTG ATCAGC CCCGCCG-GCCGCG TTCCTGACCGCTACC TERM 2617 7313065 - 7313033 - g 91 -14.8 -3.90241 | gap 1, opp_overlap 7313033, overlap 7313030 CATCAAGGAGAAGAA CGCGGCGCGGCGTGA TCAG CCCCGCCG-GCCGCG TTCCTGACCGCTACC RHA1_ro06802 7312668 - 7313072 + | hypothetical protein RHA1_ro06803 7315580 - 7313076 - | superfamily II DNA/RNA helicase RHA1_ro06804 7316658 - 7315621 - | hydrolase RHA1_ro06805 7317771 - 7316803 - | hypothetical protein RHA1_ro06806 7318021 - 7318683 + | hydroxyacylglutathione hydrolase RHA1_ro06807 7318715 - 7319491 + | hypothetical protein RHA1_ro06808 7319652 - 7320791 + | hypothetical protein RHA1_ro06809 7321803 - 7320811 - | UDP-galactose 4-epimerase RHA1_ro06810 7322499 - 7321807 - | Fe(2+)-dependent transcriptional regulator RHA1_ro06811 7322634 - 7323905 + | acetoin dehydrogenase RHA1_ro06812 7323898 - 7326660 + | acetyl-CoA synthetase TERM 2618 7326730 - 7326684 - T 100 -23.1 -2.87132 | gap 1 CCGGCCCCGCAGACA GC-GCAACGCCGGTGCCGGTCG CGTA CGACCGGCACCGGCGCTGATAC CGGTGGGAGACTCTC sigB 7327718 - 7326747 - | RNA polymerase sigma factor SigB TERM 2619 7327146 - 7327200 + g 78 -13.5 -3.66018 | gap 1, overlap 7327160 CTCGGCCAGCTCGTC GTCGG-TCGCCTCACGCCCGAGCTGC TGGT GCAGCTCGCGCTTGATGCGGGCCAGC TTGTTGACCTGCTCG TERM 2620 7327160 - 7327185 + g 77 -14.7 -3.14132 | overlap 7327146 CGTCGGTCGCCTCAC GCCCGAGCTGC TGGT GCAGCTCGCGC TTGATGCGGGCCAGC RHA1_ro06814 7329363 - 7327885 - | rRNA/tRNA methylase RHA1_ro06815 7329753 - 7329394 - | hypothetical protein TERM 2621 7329954 - 7329980 + G 71 -10.8 -3.59979 | overlap 7329937 GCCGTCATGGGCACT CACGTCGTCGCG TTG TGCGGCGAAGTG TTTCCGGTGACGAAA RHA1_ro06816 7329831 - 7330067 + | hypothetical protein RHA1_ro06817 7331212 - 7330040 - | hypothetical protein TERM 2622 7331566 - 7331520 - g 81 -12.9 -3.86897 | overlap 7331521 7331525 CCTACCTCGCACAAA CCGAACCTGCCAGACCCGCAG GATCA CTGCGCGCCTGGCAGCGTCGT GCGCTGACGAAGTAT TERM 2623 7331565 - 7331521 - g 75 -16.4 -2.91924 | overlap 7331520 7331525 CTACCTCGCACAAAC CGAACCTGCCAGACCCGCAG GATCA CTGCGCGCCTGGCAGCGTCG TGCGCTGACGAAGTA TERM 2624 7331561 - 7331525 - g 74 -14.4 -3.32997 | overlap 7331521 7331520 CTCGCACAAACCGAA CCTGCCAGACCCGCAG GATCA CTGCGCGCCTGGCAGC GTCGTGCGCTGACGA RHA1_ro06818 7331429 - 7333228 + | RNA helicase TERM 2625 7333294 - 7333254 - T 100 -32.9 -3.05844 | opp_overlap 7333258, overlap 7333258 CCGGTGACTCGAACA CAAAGAGACCGGCGAGTGC ATC GCACTCGCCGGTCTCTTTG TTGAAGAGGTGAGCC TERM 2626 7333290 - 7333258 - T 100 -27.9 -4.20368 | opp_overlap 7333258, overlap 7333254 TGACTCGAACACAAA GAGACCGGCGAGTGC ATC GCACTCGCCGGTCTC TTTGTTGAAGAGGTG TERM 2627 7333258 - 7333290 + T 100 -27.9 -4.1552 | opp_overlap 7333258 7333254 TGACTCGAACACAAA GAGACCGGCGAGTGC ATC GCACTCGCCGGTCTC TTTGTTGAAGAGGTG RHA1_ro06819 7333530 - 7333336 - | hypothetical protein TERM 2628 7333577 - 7333608 + H 71 -14.4 -2.6927 | overlap 7333574 7333579 AGTGCCTGGGGCCTT GGTCCGCCGCGTCG GGGG TGGCGCGGTGGATC TACTCTGTCAGACGT RHA1_ro06820 7333791 - 7334144 + | hypothetical protein RHA1_ro06821 7334192 - 7334674 + | hypothetical protein RHA1_ro06822 7334682 - 7335854 + | transmembrane transport protein TERM 2629 7335866 - 7335908 + T 100 -23.5 -2.91912 | opp_overlap 7335869 GTAGCGAGACCCAGA CGACGATGCCCCCGGACTC GCTCG GAGTCCGGGGGCATCGAGG TGTGTACGTCAGTCC TERM 2630 7335905 - 7335869 - T 100 -28.2 -2.65815 | opp_overlap 7335866 GCGAGACCCAGACGA CGATGCCCCCGGACTC GCTCG GAGTCCGGGGGCATCG AGGTGTGTACGTCAG sigA 7337290 - 7335917 - | RNA polymerase sigma factor TERM 2631 7336752 - 7336800 + g 72 -14.5 -2.91274 | CCGGCCTCGATCCGC TTGGCGAGCTCGACCTCCTCTTC GGC GTTGAGGAGGGCGACCTTGCCGA TCTGCTTGAGGTAGG TERM 2632 7337102 - 7337126 + g 82 -14.2 -3.69395 | overlap 7337087 7337117 GCCGCCCGCCTTCTT GGCCGCCGCC TTCTT GGCGGGGGCC TTCTTCGCTGCTGCC RHA1_ro06824 7338164 - 7337412 - | polyphosphate--glucose phosphotransferase RHA1_ro06825 7338303 - 7339223 + | inositol-1-monophosphatase RHA1_ro06826 7339920 - 7339231 - | secreted alanine rich protein RHA1_ro06827 7340402 - 7340704 + | hypothetical protein TERM 2633 7340751 - 7340723 - T 77 -14.5 -2.82516 | GCGGCGAGTACGAGA GGCGGACGGTGGG AGG CCCACCGTCCGAT CAGTCTCCGTCCGCC RHA1_ro06828 7341176 - 7340751 - | hypothetical protein dut 7341314 - 7341829 + | deoxyuridine 5'-triphosphate nucleotidohydrolase RHA1_ro06830 7341832 - 7342662 + | hypothetical protein RHA1_ro06831 7343432 - 7342686 - | hypothetical protein RHA1_ro06832 7343569 - 7343946 + | hypothetical protein RHA1_ro06833 7343975 - 7344655 + | hypothetical protein trkA 7345717 - 7345058 - | Trk system potassium uptake protein RHA1_ro06835 7346431 - 7345766 - | Trk system potassium uptake protein RHA1_ro06836 7346474 - 7348588 + | amino acid transporter RHA1_ro06837 7348602 - 7349870 + | RNA methyltransferase RHA1_ro06838 7349952 - 7350410 + | MarR family transcriptional regulator RHA1_ro06839 7351006 - 7350407 - | hypothetical protein drrB 7351902 - 7351063 - | ABC daunorubicin resistance transporter, transmembrane permease component drrA 7352861 - 7351899 - | ABC daunorubicin resistance transporter, ATP-binding component RHA1_ro06842 7354768 - 7352960 - | glutaminase RHA1_ro06843 7355019 - 7356968 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 2634 7356980 - 7357018 + T 79 -14.6 -2.91912 | opp_overlap 7356984 CTGAGTCGTTGCACA GAAATCCGGCCGAATCAC AGT GTGATTCGGCCGGATCCG TATGTGCCTGGGTCA TERM 2635 7357014 - 7356984 - T 100 -24.2 -4.03234 | opp_overlap 7356980 GTCGTTGCACAGAAA TCCGGCCGAATCAC AGT GTGATTCGGCCGGA TCCGTATGTGCCTGG RHA1_ro06844 7358428 - 7357031 - | major facilitator superfamily sugar transporter RHA1_ro06845 7359541 - 7358525 - | ABC Fe(3+) transporter, substrate binding component TERM 2636 7359648 - 7359685 + H 86 -10.5 -4.21194 | gap 1, opp_overlap 7359641 7359640 ATTGAAACTTCCGGG CCCGGC-CCGGCCTGG CGCATTC CCGGGTCGTTGCCGGG TTTTGGCTGGTGAGG TERM 2637 7359743 - 7359792 + H 77 -8.3 -4.23674 | GATTCGCGGGGGCGC CCCGAGCGGCGGTTCGCGGCGAC TCCG GGCCCCGCCGACTGCCGTTAGCG TTTGTCTTCGTCCAG RHA1_ro06846 7359836 - 7360615 + | GntR family transcriptional regulator RHA1_ro06847 7360612 - 7360839 + | ferredoxin RHA1_ro06848 7360856 - 7362286 + | ABC transporter, substrate-binding component RHA1_ro06849 7362283 - 7363143 + | ABC transporter, permease protein RHA1_ro06850 7363140 - 7363919 + | ABC transporter, ATP-binding protein RHA1_ro06851 7363964 - 7366603 + | putative oxidoreductase/HEAT repeat-containing protein TERM 2638 7366648 - 7366607 - T 100 -27.5 -3.01712 | GCCGCCCCCTGAACA GGTGAGTGGCGACGTGTGC CGGG GCACACGTCGCCACTCACG TGGGGTCAGACGCTC RHA1_ro06852 7368762 - 7366654 - | fatty acid oxidation complex alpha subunit TERM 2639 7367221 - 7367242 + g 74 -13 -3.62522 | opp_overlap 7367213 7367208 7367212 GACGAACCCGGGCAG GTCGGCGG AACCGA CCGCCGAC TTCTTGAGCGCCTTG TERM 2640 7367503 - 7367539 + g 70 -12.2 -3.28712 | opp_overlap 7367502, overlap 7367501 GAGGTTCTCGAACAC GGCCTCGATCACGAAG TCGGT CTTCGCGAACGCGGCC TTGTCCAGCGAGCCG RHA1_ro06853 7369971 - 7368763 - | thiolase RHA1_ro06854 7371406 - 7370117 - | ribonuclease III RHA1_ro06855 7372850 - 7371456 - | hypothetical protein RHA1_ro06856 7373016 - 7374266 + | esterase/lipase RHA1_ro06857 7374860 - 7374267 - | hypothetical protein hemE 7375001 - 7376089 + | uroporphyrinogen decarboxylase RHA1_ro06859 7376086 - 7377447 + | protoporphyrinogen oxidase RHA1_ro06860 7377452 - 7378147 + | chlorite dismutase TERM 2641 7380200 - 7380151 - g 77 -17.7 -2.52543 | opp_overlap 7380152 7380183, overlap 7380123 ACCGCTCCGAATCCA TCCGGACGACGCCGCCGCCCGCG GACT CACCGCCGGCGACGTCGTCCGCG TGTTCAACGACCGCG TERM 2642 7380152 - 7380200 + G 78 -16.6 -3.01712 | gap 1, opp_overlap 7380123 7380151, overlap 7380183 CCGCTCCGAATCCAT C-CGGACGACGCCGCCGCCCGCG GACT CACCGCCGGCGACGTCGTCCGCG TGTTCAACGACCGCG RHA1_ro06861 7378163 - 7380511 + | trimethylamine-N-oxide reductase (cytochrome c)/ dimethyl sulfoxide reductase RHA1_ro06862 7380908 - 7380471 - | methionine sulfoxide reductase RHA1_ro06863 7382304 - 7380967 - | hypothetical protein TERM 2643 7381954 - 7381933 - G 70 -12.3 -3.38272 | CAGGAGCAGGTACAA CGCGATCAC GATG GCGATCGCG TTGGCGATGATGAAC RHA1_ro06864 7383895 - 7382339 - | protease RHA1_ro06865 7384707 - 7383919 - | hypothetical protein TERM 2644 7384256 - 7384238 - GH 77 -16 -2.62184 | GCGTCGGCGAGAGCA CGGACCCG CCC CGGGTCCG CGTCCGTGCACGTGA RHA1_ro06866 7384706 - 7385758 + | AFG1-like ATPase RHA1_ro06867 7386298 - 7385768 - | N-acetlytransferase RHA1_ro06868 7387863 - 7386514 - | major facilitator transporter TERM 2645 7387678 - 7387652 - G 79 -7.2 -4.46212 | overlap 7387654 GCCGCGAGGAGAAAA CCCTGCAGGC CGAATGC GCCCGCAGCG GCGATCCGTGCCGAG RHA1_ro06869 7388183 - 7388671 + | 2-isopropylmalate synthase TERM 2646 7388675 - 7388727 + F 83 -15 -3.17723 | gap 2, opp_overlap 7388683, overlap 7388677 7388685 CAGCCCGCCTGATAC CCG--GACAACAGTTCAGCCCCGGTC GAG GACCGGGGCTGAACTGTCGTGAACTG TTCGGTTGACAGTGA TERM 2647 7388677 - 7388725 + F 82 -16.2 -3.15056 | gap 2, opp_overlap 7388683, overlap 7388675 7388685 GCCCGCCTGATACCC G--GACAACAGTTCAGCCCCGGTC GAG GACCGGGGCTGAACTGTCGTGAAC TGTTCGGTTGACAGT TERM 2648 7388717 - 7388683 - f 100 -28.8 -3.32343 | opp_overlap 7388677 7388675 7388685 CTGATACCCGGACAA CAGTTCAGCCCCGGTC GAG GACCGGGGCTGAACTG TCGTGAACTGTTCGG TERM 2649 7388685 - 7388715 + F 100 -25.6 -2.8092 | opp_overlap 7388683, overlap 7388677 7388675 GATACCCGGACAACA GTTCAGCCCCGGTC GAG GACCGGGGCTGAAC TGTCGTGAACTGTTC TERM 2650 7389588 - 7389543 - f 100 -26.5 -2.78816 | opp_overlap 7389548 7389584, overlap 7389548 CCAGCCGGGACCACA GAAAAGAAGAGGGCGTTTCCG AAAT CGGAAACGCCCTCTTCTTTTT CGTGTGCGCACCCGA TERM 2651 7389548 - 7389583 + F 100 -26.4 -4.8048 | opp_overlap 7389543 7389548 CGGGACCACAGAAAA GAAGAGGGCGTTTCCG AAAT CGGAAACGCCCTCTTC TTTTTCGTGTGCGCA TERM 2652 7389583 - 7389548 - f 100 -26.4 -4.57353 | opp_overlap 7389548, overlap 7389543 CGGGACCACAGAAAA GAAGAGGGCGTTTCCG AAAT CGGAAACGCCCTCTTC TTTTTCGTGTGCGCA RHA1_ro06876 7389696 - 7390901 + | hypothetical protein TERM 2653 7390937 - 7390899 - f 80 -16.7 -2.52464 | gap 1 GTCTGTGTGAAGGGA TGACCTGCGGGCGGTGCG ACGA CGCGCCGCC-GCAGGTCG CGCTCGGTAGGCTGG RHA1_ro06877 7390957 - 7391430 + | hypothetical protein thrS 7391526 - 7393583 + | threonyl-tRNA synthetase RHA1_ro06879 7393589 - 7394164 + | hypothetical protein RHA1_ro06880 7394244 - 7394909 + | phosphatidylinositol synthase RHA1_ro06881 7394906 - 7395811 + | lipid A biosynthesis lauroyl acyltransferase TERM 2654 7396919 - 7396892 - g 70 -14.8 -2.78384 | opp_overlap 7396882 7396881 TGCGTGTCTACGAGA CGGTCACCGTCG GCCG CGACGGCGTCCG GGAGGTCGGCTCGTG RHA1_ro06882 7395808 - 7396935 + | phosphatidylinositol alpha-mannosyltransferase RHA1_ro06883 7396932 - 7397954 + | hypothetical protein RHA1_ro06884 7398107 - 7399009 + | pyridoxine biosynthesis protein RHA1_ro06885 7399169 - 7399990 + | acyl-CoA thioesterase II RHA1_ro06886 7400620 - 7399997 - | hypothetical protein RHA1_ro06887 7400677 - 7401531 + | acyl-CoA thioesterase II TERM 2655 7402031 - 7402064 + G 70 -14.6 -2.70932 | gap 1 GGCCGCCGGACGGAT CGTGGCCGTC-CGGC AGGGC GCCGTGGTGGCCACG TCGTTCCACCCGGAG RHA1_ro06888 7401528 - 7402136 + | glutamine amidotransferase subunit PdxT RHA1_ro06889 7403047 - 7402133 - | hypothetical protein RHA1_ro06890 7403400 - 7403044 - | transcriptional regulator RHA1_ro06891 7403545 - 7404297 + | hypothetical protein ruvC 7404433 - 7405002 + | Holliday junction resolvase ruvA 7404999 - 7405601 + | Holliday junction DNA helicase motor protein ruvB 7405598 - 7406695 + | Holliday junction DNA helicase B RHA1_ro06895 7406919 - 7407209 + | hypothetical protein secD 7407354 - 7409024 + | preprotein translocase subunit SecD secF 7409021 - 7410253 + | preprotein translocase subunit SecF RHA1_ro06898 7410255 - 7411991 + | dipeptide-binding protein TERM 2656 7412058 - 7412087 + G 84 -4.9 -5.0538 | gap 1 ACGACTTTCCGCAAC CCGGGGTGCGGTTC GCC GACCTG-ACGCCGG TTTTTTCCGATGCGG RHA1_ro06899 7411988 - 7412521 + | adenine phosphoribosyltransferase relA 7412625 - 7415000 + | GTP diphosphokinase TERM 2657 7415053 - 7415004 - T 100 -22.4 -3.14132 | gap 1, opp_overlap 7415011 TCCGCCGCGTAGCAA CGCCGAACAGGACGGTCGTTCGA TCAGT TCGAACGACCGTCCCGTTCGT-G TAGCCGGGGGAGGGC TERM 2658 7415011 - 7415047 + T 100 -21 -3.25823 | opp_overlap 7415004 CGTAGCAACGCCGAA CAGGACGGTCGTTCGA TCAGT TCGAACGACCGTCCCG TTCGTGTAGCCGGGG RHA1_ro06901 7415864 - 7415070 - | peptidylprolyl isomerase ppiB 7416765 - 7415887 - | peptidylprolyl isomerase B TERM 2659 7416705 - 7416724 + g 75 -10 -4.08887 | CTCTGTCGGCGCGGC GTTCGAGC TGAC GCTCGAGC TTTCGTTTGGCTGCT RHA1_ro06903 7416916 - 7417623 + | hydrolase hisS 7417639 - 7418910 + | histidyl-tRNA synthetase TERM 2660 7419044 - 7419093 + G 74 -16.3 -2.80994 | TTCGGGCCCGTGTGG GTCGGTGTGACGGTCGGGGCCGT GATC GCGGTCCCGACCGCCGCGTCCGC TCTCCTCACGTTGCG RHA1_ro06905 7418900 - 7419532 + | hypothetical protein RHA1_ro06906 7419721 - 7420434 + | hypothetical protein RHA1_ro06907 7422319 - 7420439 - | hypothetical protein TERM 2661 7420780 - 7420830 + g 81 -19 -2.78384 | gap 1 TGGCCAGGTTCACCC CCGCGAGGTGGTCGCGGTTGCCG CCGACC CGGCAGCC-CGGGCACCACGCGG TGTGGTACCCGCCGG RHA1_ro06908 7423322 - 7422423 - | transposase RHA1_ro06909 7423645 - 7423319 - | transposase TERM 2662 7423752 - 7423777 + H 75 -3.9 -4.68994 | gap 1, overlap 7423754 7423756 GCGGGCCGAACGTCC GACCGGGA-CAC CTG GTGATCCCTGGC TTTTTGAGTGGTCGT RHA1_ro06910 7424200 - 7424454 + | hypothetical protein RHA1_ro06911 7424451 - 7425512 + | integrase/recombinase RHA1_ro06912 7425502 - 7425816 + | hypothetical protein TERM 2663 7425854 - 7425874 + F 70 -8.1 -3.96624 | opp_overlap 7425825, overlap 7425855 CCGCTGCGGTCGGCC GCGGGGCCG ACT CGGCCGCGA TTTGTGCTGCCGGTG RHA1_ro06913 7426017 - 7427426 + | hypothetical protein RHA1_ro06914 7428121 - 7427438 - | insertion sequence ATP-binding protein RHA1_ro06915 7428522 - 7428118 - | transposase RHA1_ro06916 7428597 - 7429022 + | transposase RHA1_ro06917 7429140 - 7429724 + | transposase amtR 7430728 - 7430021 - | MalT family transcriptional regulator RHA1_ro06919 7430790 - 7432493 + | amino-acid permease RHA1_ro06920 7432495 - 7433340 + | hypothetical protein RHA1_ro06921 7433337 - 7433993 + | hypothetical protein TERM 2664 7434860 - 7434880 + G 72 -13.9 -3.15544 | opp_overlap 7434858 7434857 AAGCTCGGACAACTG GCGCCCGGC GAT GCCGTGCGC TTCGTGCCGATCAGG RHA1_ro06922 7433990 - 7435975 + | allophanate hydrolase RHA1_ro06923 7436385 - 7435981 - | hypothetical protein RHA1_ro06924 7437096 - 7436620 - | hypothetical protein RHA1_ro06925 7437449 - 7437093 - | ArsR family transcriptional regulator RHA1_ro06926 7438593 - 7437508 - | hypothetical protein RHA1_ro06927 7438786 - 7440378 + | hypothetical protein RHA1_ro06928 7442180 - 7440417 - | ABC transporter, ATP-binding protein TERM 2665 7443017 - 7443003 - g 100 -2.7 -5.60864 | GATACACGAAAAAAA CCGAC GGGGA GACGG TGGACGCGACCGACT RHA1_ro06929 7442270 - 7443406 + | serine-type D-Ala-D-Ala carboxypeptidase RHA1_ro06930 7443769 - 7443503 - | hypothetical protein RHA1_ro06931 7444303 - 7443785 - | hypothetical protein RHA1_ro06932 7444377 - 7444733 + | hypothetical protein RHA1_ro06933 7444928 - 7445167 + | hypothetical protein RHA1_ro06934 7445646 - 7445323 - | hypothetical protein RHA1_ro06935 7447840 - 7445777 - | membrane carboxypeptidase (penicillin-binding protein) dnaK3 7449034 - 7450881 + | molecular chaperone DnaK grpE3 7450878 - 7451549 + | heat shock protein GrpE TERM 2666 7451882 - 7451892 + G 78 -8.2 -4.30576 | overlap 7451866 CGATCAGGGGGGTTC CCCG GGA CGGG TTTTCCTCCTGGCAC RHA1_ro06938 7451633 - 7452802 + | chaperone protein RHA1_ro06939 7453012 - 7453308 + | hypothetical protein RHA1_ro06940 7454996 - 7453383 - | protein kinase/ LuxR family transcriptional regulator TERM 2667 7454615 - 7454652 + g 72 -8.3 -4.08216 | gap 1, opp_overlap 7454624 AGTATTCCCGGTGTC GGCGACGAAGGTCGG-GA TAC TCGCCGGCCTCCTGCGCC TTTTCCCGGCCGTAG RHA1_ro06941 7456304 - 7455018 - | serine/threonine protein kinase PpkA RHA1_ro06942 7456288 - 7456629 + | hypothetical protein RHA1_ro06943 7456938 - 7458029 + | transposase TERM 2668 7458292 - 7458249 - T 93 -18.9 -3.14564 | gap 1, opp_overlap 7458244 GGACCTGTCGATGAA GTGCAGAGGCGCCTCCAGGG TCGCT CCCCGGAGGCGCCTC-ACTC TGCCCTCTTGACAGA RHA1_ro06944 7459735 - 7458365 - | hydrolase RHA1_ro06945 7461484 - 7459784 - | SARP family transcriptional regulator RHA1_ro06946 7461952 - 7462608 + | peroxiredoxin RHA1_ro06947 7462819 - 7463082 + | hypothetical protein RHA1_ro06948 7463923 - 7463531 - | transposase gluA2 7464151 - 7464867 + | glutamate transport ATP-binding protein GluA gluB2 7464903 - 7465790 + | glutamate-binding protein precursor gluC2 7465819 - 7466466 + | glutamate transport system permease protein GluC RHA1_ro06952 7466463 - 7467290 + | glutamate transport system permease protein GluD TERM 2669 7467346 - 7467388 + T 100 -23.7 -4.38927 | GGAGAGCGCGATCAG TGCCGGTATCTCGACCG CCCGTACCC CGGTCGAGATACCGGCA TTTGTTCTATGGGGA RHA1_ro06953 7468311 - 7467529 - | transcriptional regulator TERM 2670 7468411 - 7468442 + H 100 -9.4 -4.91511 | opp_overlap 7468411 GACGAGCGATCTAAA CCATCAGGCGGTGT ATGT AGACCGCTAGATGG TTTTTGTGGTAGGGT TERM 2671 7469232 - 7469211 - g 70 -3.5 -4.43309 | overlap 7469212 7469213 GAACGGCAACGAAAA CCCCACCGG CGCA CCGTCGGCG ACCTTCCAGACCGGA RHA1_ro06954 7468519 - 7469709 + | acyl-CoA transferases/ carnitine dehydratase RHA1_ro06955 7469706 - 7470575 + | citrate synthase RHA1_ro06956 7470562 - 7471524 + | hypothetical protein RHA1_ro06957 7471521 - 7471964 + | thioesterase RHA1_ro06958 7472014 - 7472622 + | methyltransferase RHA1_ro06959 7473198 - 7472845 - | hypothetical protein RHA1_ro06960 7473759 - 7473478 - | hypothetical protein RHA1_ro06961 7474312 - 7474112 - | hypothetical protein RHA1_ro06962 7475090 - 7474743 - | hypothetical protein RHA1_ro06963 7476992 - 7475391 - | major facilitator superfamily multidrug resistance protein RHA1_ro06964 7477847 - 7477209 - | hypothetical protein RHA1_ro06965 7478178 - 7478606 + | hypothetical protein RHA1_ro06966 7478969 - 7479412 + | hypothetical protein TERM 2672 7479691 - 7479673 - f 75 -3 -4.83615 | opp_overlap 7479689, overlap 7479681 GATGCCCGAGAAAAA GGATCACA GTC CGAGACCC GAACCCGGTCCATTC RHA1_ro06967 7479728 - 7479922 + | hypothetical protein TERM 2673 7480131 - 7480152 + G 72 -8.7 -4.00445 | opp_overlap 7480103, overlap 7480121 GATGACCGCCGACGC GATGGCGGT GTGT ACCGCGATC TTGTTCTTCATGATG RHA1_ro06968 7479937 - 7480182 + | hypothetical protein RHA1_ro06969 7481051 - 7480404 - | phosphate transport system protein PhoU RHA1_ro06970 7481646 - 7481221 - | hypothetical protein RHA1_ro06971 7482897 - 7482409 - | hypothetical protein TERM 2674 7482914 - 7482950 + r 70 -5.8 -4.32678 | opp_overlap 7482887 CTTCGTCTTCGCACC TCTCGCCGCCCG CCGAGGTCGGGAT CAGGCGGCGGGA TTGTTTGTTTCCCAG RHA1_ro06972 7483503 - 7483126 - | hypothetical protein TERM 2675 7483534 - 7483561 + r 84 -17.8 -2.74012 | overlap 7483560 ACTTGGTGATTCCGG TCAGGAGGCCAG GGTC CTGGCCTCCTGG TCGTTGAACTCGTCG RHA1_ro06973 7483776 - 7483534 - | hypothetical protein RHA1_ro06974 7484279 - 7483773 - | hypothetical protein RHA1_ro06975 7484815 - 7485222 + | hypothetical protein RHA1_ro06976 7485710 - 7486240 + | transposase RHA1_ro06977 7486237 - 7487118 + | transposase RHA1_ro06978 7487216 - 7487596 + | transposase RHA1_ro06980 7490010 - 7488055 - | transposase RHA1_ro06979 7487645 - 7488121 + | glycine-rich cell wall structural protein precursor RHA1_ro06981 7491409 - 7490210 - | transposase RHA1_ro06982 7491446 - 7491949 + | insertion sequence ATP-binding protein RHA1_ro06983 7492034 - 7492294 + | hypothetical protein RHA1_ro06984 7492499 - 7493359 + | histone-like protein RHA1_ro06985 7494096 - 7494764 + | hypothetical protein RHA1_ro06986 7494748 - 7495005 + | hypothetical protein RHA1_ro06987 7496287 - 7495277 - | NADP-dependent oxidoreductase RHA1_ro06988 7496472 - 7497488 + | polysaccharide deacetylase RHA1_ro06989 7497540 - 7499060 + | long-chain-fatty-acid--CoA ligase RHA1_ro06990 7499153 - 7500100 + | transcriptional regulator RHA1_ro06991 7500232 - 7501068 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro06992 7501184 - 7501429 + | hypothetical protein RHA1_ro06993 7501469 - 7502104 + | TetR family transcriptional regulator RHA1_ro06994 7502653 - 7502291 - | hypothetical protein RHA1_ro06995 7503348 - 7504481 + | lipase TERM 2676 7504860 - 7504881 + GT 77 -12.3 -3.62572 | GCGGCGGATGCCGAG CGAGGCCGA TCAG TCGGTCTCG TTTGCGCTGGTCGTG RHA1_ro06997 7505843 - 7504869 - | hypothetical protein RHA1_ro06996 7504594 - 7505022 + | hypothetical protein TERM 2677 7505848 - 7505868 + FH 70 -11.2 -3.37056 | GGGCTGACCACTTTG TGCCGAAC GGTCG GTTCGGCA TTGTCGGTGGCTCCT RHA1_ro06998 7505933 - 7506475 + | hypothetical protein RHA1_ro06999 7506876 - 7506493 - | hypothetical protein TERM 2678 7506568 - 7506580 + g 90 -10.5 -4.7254 | overlap 7506542 CCTGGCCAGAGGTGG GGGCG TCT CGCCC TTTTTGCTGAGAGGT RHA1_ro07000 7507179 - 7507808 + | TetR family transcriptional regulator RHA1_ro07001 7507969 - 7508517 + | hypothetical protein RHA1_ro07002 7508653 - 7509255 + | hypothetical protein RHA1_ro07003 7509635 - 7510063 + | hypothetical protein RHA1_ro07004 7510286 - 7510564 + | hypothetical protein RHA1_ro07005 7510796 - 7511263 + | hypothetical protein TERM 2679 7511334 - 7511374 + T 73 -12.5 -3.42861 | overlap 7511327 7511336 GGTTCGGTCATGGGC ATGTTTCGGGGCCCCGG TGATCAT CCGAGGCCCCGAAACTC TTGGTGTTCTACGTT TERM 2680 7511336 - 7511372 + T 100 -19.5 -3.27771 | overlap 7511334 7511327 TTCGGTCATGGGCAT GTTTCGGGGCCCCGG TGATCAT CCGAGGCCCCGAAAC TCTTGGTGTTCTACG RHA1_ro07006 7511724 - 7511383 - | hypothetical protein TERM 2681 7511577 - 7511598 + g 71 -3 -4.65263 | TGCCGAATGTTTCAC CTTTTGGG CAATTT CTCGAAAG TTTATTTTGAACAGT RHA1_ro07007 7511816 - 7512115 + | hypothetical protein RHA1_ro07008 7512736 - 7512128 - | hypothetical protein TERM 2682 7512580 - 7512537 - G 78 -10.2 -4.18762 | opp_overlap 7512539, overlap 7512539 AATTCGCAGGGAAAA CACCGGCGCAGCGCCTTGAA ATAT TTCACGACGCGACACCGGTT GTCATCCACGGCAGC TERM 2683 7512578 - 7512539 - G 78 -12.8 -3.69216 | opp_overlap 7512539, overlap 7512537 TTCGCAGGGAAAACA CCGGCGCAGCGCCTTGAA ATAT TTCACGACGCGACACCGG TTGTCATCCACGGCA RHA1_ro07009 7512817 - 7513107 + | hypothetical protein TERM 2684 7513130 - 7513109 - Tf 86 -12.9 -3.86346 | overlap 7513110 TCATCGTGGGATAAA GCCCGCGGC CCCG GCCGCGGGG CACTTACGCTCGATC TERM 2685 7513129 - 7513110 - Tf 85 -16.4 -2.91593 | overlap 7513109 CATCGTGGGATAAAG CCCGCGGC CCCG GCCGCGGG GCACTTACGCTCGAT RHA1_ro07011 7514099 - 7513605 - | hypothetical protein RHA1_ro07010 7513208 - 7513687 + | hypothetical protein RHA1_ro07012 7514607 - 7514128 - | hypothetical protein RHA1_ro07013 7515423 - 7514629 - | hypothetical protein RHA1_ro07014 7516204 - 7515512 - | hypothetical protein RHA1_ro07015 7516965 - 7517546 + | hypothetical protein TERM 2686 7517566 - 7517600 + T 100 -31.6 -3.50869 | opp_overlap 7517547 7517566 CCGCGATTCACAGAA GAGGGGCCCTGCACCG ATC CGGTGCAGGGCCCCTC TTCTGTCGCCTGGTC TERM 2687 7517600 - 7517566 - T 100 -31.6 -3.51924 | opp_overlap 7517566, overlap 7517547 CCGCGATTCACAGAA GAGGGGCCCTGCACCG ATC CGGTGCAGGGCCCCTC TTCTGTCGCCTGGTC RHA1_ro07016 7518138 - 7517659 - | transposase RHA1_ro07017 7518740 - 7518135 - | transposase RHA1_ro07018 7519148 - 7518885 - | hypothetical protein RHA1_ro07019 7520295 - 7519135 - | hypothetical protein RHA1_ro07020 7521342 - 7520446 - | protein-tyrosine kinase RHA1_ro07021 7521980 - 7521672 - | hypothetical protein RHA1_ro07022 7522935 - 7522381 - | hypothetical protein RHA1_ro07023 7524422 - 7523001 - | hypothetical protein RHA1_ro07024 7525780 - 7524437 - | hypothetical protein TERM 2688 7525286 - 7525275 - G 73 -7.2 -4.19735 | GTGGCGAAAAGGAAA CGGG AGGA CCCG CTGAGCATCTCGGGG RHA1_ro07025 7526645 - 7525905 - | hypothetical protein RHA1_ro07026 7526967 - 7527239 + | hydrolase sfuC1 7528382 - 7527342 - | Fe(3+) transporting ATPase protein SfuC sfuB1 7529944 - 7528379 - | ABC Fe(3+)-transporter, permease protein SfuB sfuA1 7531005 - 7529965 - | ABC Fe(3+) transporter, substrate binding protein SfuA RHA1_ro07030 7533894 - 7531273 - | acyl-CoA synthetase TERM 2689 7534221 - 7534239 + H 72 -11.7 -3.44284 | overlap 7534219 CCGACGGCGAGGCGG TCGGGGC CATGT GCCCCGA TGTTCTTCGTCACCG TERM 2690 7534336 - 7534376 + G 72 -14 -3.16881 | gap 2, overlap 7534361 TCCACCCTGCCGATC CGGCTGCACCGTTCGCCGGC GAG GCCGGCGA-CGCCGCA-CCG TTCGTCCGGTCGCTG RHA1_ro07031 7534296 - 7534952 + | hypothetical protein RHA1_ro07032 7535438 - 7534980 - | hypothetical protein RHA1_ro07033 7536205 - 7535441 - | hypothetical protein TERM 2691 7536233 - 7536263 + r 100 -21.2 -2.80443 | CCTGTTGATACGGCA CGGCACTCGACGAC CGG GGCGTCGAGTGCCG TGTAGTCGGATATGG RHA1_ro07034 7537218 - 7536376 - | methyltransferase RHA1_ro07035 7537552 - 7537436 - | hypothetical protein RHA1_ro07036 7538018 - 7538944 + | ABC transporter, ATP-binding component RHA1_ro07037 7538941 - 7539747 + | ABC transporter, permease component TERM 2692 7539754 - 7539796 + F 95 -13.4 -4.28656 | gap 1, opp_overlap 7539756, overlap 7539755 GGCCGCTGAACGACG AACCGCCCTGCCCCATCTC ACAAAG GAGA-GGGGCGGGGCGGGG TTTTGCGTGTTCGAT TERM 2693 7539755 - 7539795 + F 85 -16.9 -3.1647 | gap 1, opp_overlap 7539756, overlap 7539754 GCCGCTGAACGACGA ACCGCCCTGCCCCATCTC ACAAAG GAGA-GGGGCGGGGCGGG GTTTTGCGTGTTCGA TERM 2694 7539794 - 7539756 - f 93 -18.2 -3.27298 | gap 1, opp_overlap 7539755 7539754 CCGCTGAACGACGAA CCGCCCTGCCCCATCTC ACAAAG GAGA-GGGGCGGGGCGG GGTTTTGCGTGTTCG RHA1_ro07038 7539803 - 7540201 + | hypothetical protein RHA1_ro07039 7540236 - 7540865 + | sigma factor, sigma 70 type, group 4 (ECF) TERM 2695 7540970 - 7540924 - T 100 -19.4 -3.31263 | opp_overlap 7540929 7540930 AGGTCACGCTGACAA GACTGCGGTGCGGTGCGAGCCA TCT TCGCTCGCACCGCACCCTTGTC ACCTGAGGGCTACTG TERM 2696 7540929 - 7540965 + T 100 -20.9 -3.32844 | opp_overlap 7540924, overlap 7540930 ACGCTGACAAGACTG CGGTGCGGTGCGAGCCA TCT TCGCTCGCACCGCACCC TTGTCACCTGAGGGC TERM 2697 7540930 - 7540964 + T 100 -24.4 -2.59564 | opp_overlap 7540924, overlap 7540929 CGCTGACAAGACTGC GGTGCGGTGCGAGCCA TCT TCGCTCGCACCGCACC CTTGTCACCTGAGGG RHA1_ro07040 7541504 - 7540980 - | hypothetical protein TERM 2698 7541445 - 7541466 + g 71 -11.5 -3.54475 | opp_overlap 7541437 CCACACACCCCGAGC GGCCCTCGC TCTG GCGAGGGAC TTCTGTGCTCGAGGC RHA1_ro07041 7542263 - 7541925 - | hypothetical protein RHA1_ro07042 7544230 - 7542560 - | hypothetical protein TERM 2699 7544294 - 7544311 + H 71 -4.1 -4.52047 | gap 1 ATTCCTGGGTCGTCG CATG-CCG CAC CGGACGTG TTTTGTGCTGTGGTG RHA1_ro07043 7544295 - 7544735 + | hypothetical protein RHA1_ro07044 7545314 - 7545024 - | hypothetical protein RHA1_ro07045 7546504 - 7545755 - | transcriptional regulator TERM 2700 7546283 - 7546322 + g 83 -15 -3.56325 | gap 1, opp_overlap 7546273 GGAGATCTGACCGTA GGCGGCCAGCGCGCTGCCG AGC CGGTAGCG-GTTGGACGTC TTGTCCTTGTCGAGG TERM 2701 7546699 - 7546686 - H 74 -2.3 -4.77173 | TCTGTAGAAAACAAA CCGGA GGAA TTCGG ACGCGGAGAACATAG RHA1_ro07046 7546765 - 7547799 + | ABC transporter, substrate-binding component RHA1_ro07047 7547796 - 7548656 + | ABC taurine uptake transporter, permease protein TERM 2702 7549124 - 7549073 - g 73 -12.8 -3.44146 | gap 1, opp_overlap 7549114 CTCGCGGACAAGGAA CGTGCGTGGCCCGCCAC-CCTCTCC GGT GGCGAAGCGCAGCGGGTCGCGCTCG CCCGCGCCCTCGTTC RHA1_ro07048 7548653 - 7549459 + | ABC transporter, ATP-binding component RHA1_ro07049 7549456 - 7550499 + | 2-(2-hydroxyphenyl)benzenesulfinate hydrolase TERM 2703 7551456 - 7551487 + G 73 -15.8 -2.53715 | overlap 7551455 GACGTCGCACGGCAA CTGTCGTCGCTGCG CGAG CGCGGCGCCGACGG CTTCGTCCTGGTCGG ssuD1 7550496 - 7551599 + | alkanesulfonate monooxygenase ssuD2 7551599 - 7552753 + | alkanesulfonate monooxygenase RHA1_ro07052 7552750 - 7553457 + | hypothetical protein RHA1_ro07053 7553510 - 7554451 + | ABC transporter substrate-binding protein TERM 2704 7554509 - 7554455 - T 85 -16.3 -3.14931 | TCCACCGTCTAGGAA TCTGGCGACGCGAGAGGCCGGGCGA CGACC TCGCCCGGCACCTCCCGTGGCGCGA CACCAACCCCGCATC RHA1_ro07054 7555048 - 7554647 - | hypothetical protein TERM 2705 7555222 - 7555195 - H 79 -11.2 -3.84514 | ATCTGAACCAGGAAA CCGGCCAACGCG GCTA CGCCCTGACCGG TGATCCGCAATTCCT RHA1_ro07055 7555358 - 7556461 + | sensory histidine kinase RHA1_ro07056 7556826 - 7557089 + | hypothetical protein TERM 2706 7557247 - 7557231 - T 72 -3.6 -4.61873 | opp_overlap 7557232, overlap 7557232 TCCGACAAAGGAAAA GCGAGC GCCGA GCTCGT TGTGGAAGTGCGTGA RHA1_ro07057 7557902 - 7557630 - | hypothetical protein TERM 2707 7557920 - 7557937 + H 71 -10.5 -3.65351 | overlap 7557914 GGGAGGTGGCCGCTG CGGCGGT CTTC GCCGCCG TTTCCGTCAGCCTCG RHA1_ro07058 7557993 - 7558418 + | hypothetical protein RHA1_ro07059 7558786 - 7558544 - | hypothetical protein TERM 2708 7559951 - 7559906 - g 75 -4.5 -4.59109 | gap 1, overlap 7559893 7559891 7559908 7559909 GACAGCCGTGAAAAA CACGGCCG-CGGCGACGGCTCC GGT GAAGCGGCCGGCGGCGAGCACG GCTCCGGTGACGAAG RHA1_ro07060 7559133 - 7560284 + | hypothetical protein RHA1_ro07061 7561905 - 7561276 - | hypothetical protein TERM 2709 7561914 - 7561945 + r 72 -7.2 -4.24623 | gap 1, opp_overlap 7561896 7561899, overlap 7561916 7561927 TCGGCACCCTTCTCC TCA-GGGCGGCGCCG ACC CGGCGTCGCCGGTCA TTTCTCTGTGTTTCA RHA1_ro07064 7563625 - 7563317 - | hypothetical protein RHA1_ro07065 7565171 - 7564119 - | acyl-CoA dehydrogenase RHA1_ro07066 7566418 - 7565180 - | acyl-CoA dehydrogenase RHA1_ro07067 7567179 - 7566415 - | enoyl-CoA hydratase TERM 2710 7566732 - 7566712 - G 83 -8.2 -4.56597 | TTCTGCGGTGAAAAA CAGCCGGC GCATT GCCTGCTG CGGCAGCATGCGGGC RHA1_ro07068 7568872 - 7567187 - | CoA-dependent ligase TERM 2711 7567748 - 7567699 - G 86 -22.8 -2.62184 | GGCCCCGCCACAGTA CTTCGCCGACCCCGCCGGGCGC GACAGG GCGATCGGCGGGGTCGACGATG GTCACCTCCGTGGGC RHA1_ro07069 7569006 - 7569797 + | GntR family transcriptional regulator TERM 2712 7570019 - 7569986 - g 90 -16.8 -3.73224 | opp_overlap 7569989, overlap 7569989 GCACCCTCGAGCAAA CCAGAC-GCCGCGGCG TTCT CGCCGCGGCTGTC-GG CACCATCGTCGAGTA TERM 2713 7570017 - 7569989 - g 80 -18.2 -2.96695 | gap 1, opp_overlap 7569989, overlap 7569986 CCCTCGAGCAAACCA GAC-GCCGCGGCG TTCT CGCCGCGGCTGTC GGCACCATCGTCGAG RHA1_ro07070 7569937 - 7571289 + | MFS superfamily proline/ betaine transporter TERM 2714 7571648 - 7571611 - T 85 -16.3 -3.14564 | gap 1, opp_overlap 7571615 GGAGCTCGTGACGAA TGGGTCGCCCCGCACCGG AGT CCGGTGCGGGGCGATT-A TCCACTGTGGCGCCT TERM 2715 7571615 - 7571645 + T 100 -28.4 -3.34962 | opp_overlap 7571611 CTCGTGACGAATGGG TCGCCCCGCACCGG AGT CCGGTGCGGGGCGA TTATCCACTGTGGCG RHA1_ro07071 7572438 - 7571662 - | enoyl-CoA hydratase RHA1_ro07072 7573502 - 7572435 - | enoyl-CoA hydratase RHA1_ro07073 7574647 - 7573502 - | acyl-CoA dehydrogenase RHA1_ro07074 7574853 - 7575371 + | MarR family transcriptional regulator RHA1_ro07075 7575368 - 7576279 + | LysR family transcriptional regulator RHA1_ro07076 7577579 - 7576365 - | formyl-CoA transferase RHA1_ro07077 7579096 - 7577594 - | aldehyde dehydrogenase (NAD+) adk2 7579719 - 7579150 - | adenylate kinase mmsB3 7580696 - 7579791 - | 3-hydroxyisobutyrate dehydrogenase RHA1_ro07080 7580901 - 7581272 + | hypothetical protein TERM 2716 7581399 - 7581448 + F 80 -15.1 -3.07816 | gap 1, opp_overlap 7581390, overlap 7581391 TCAACAGCTCGTGCC CCCGGTGTCGGCACGCGTTTGT AGAAGGC GTGGA-GCGTGCCGGCACCGGG TTGCGTCCATGAAGA RHA1_ro07081 7581573 - 7582817 + | transposase IS1164 RHA1_ro07082 7584237 - 7583065 - | epoxide hydrolase RHA1_ro07083 7584341 - 7584916 + | hypothetical protein TERM 2717 7584910 - 7584898 - f 76 -5.5 -4.58283 | overlap 7584909 CAACCGGCGCAAAAA CGTCG GAT CAACG AAGTGATCGTTACCT RHA1_ro07084 7585100 - 7585342 + | hypothetical protein RHA1_ro07085 7585407 - 7586723 + | major facilitator transporter RHA1_ro07086 7587590 - 7586706 - | transcriptional regulator dapA4 7588931 - 7588038 - | dihydrodipicolinate synthase TERM 2718 7588350 - 7588319 - G 74 -10.7 -3.73224 | GCACGCTGTACCAAA CGTCGCAGCCGGC GTTGAG GCCGGTCGCGGCG AAGGCGTCTCCGCTG RHA1_ro07088 7589222 - 7590715 + | major facilitator superfamily multidrug resistance protein RHA1_ro07089 7591616 - 7591338 - | hypothetical protein RHA1_ro07090 7591696 - 7592271 + | acetyltransferase RHA1_ro07091 7593761 - 7592358 - | ferredoxin--NADP(+) reductase RHA1_ro07092 7594665 - 7593778 - | hypothetical protein RHA1_ro07093 7595299 - 7594907 - | hypothetical protein RHA1_ro07094 7595751 - 7595419 - | hypothetical protein RHA1_ro07095 7596422 - 7595784 - | TetR family transcriptional regulator RHA1_ro07096 7596650 - 7597261 + | hypothetical protein RHA1_ro07097 7597832 - 7597446 - | hypothetical protein RHA1_ro07098 7597815 - 7598144 + | cytosine/ adenosine deaminase TERM 2719 7598461 - 7598444 - fH 81 -12.7 -3.62597 | GGCATTGCCGAAGAA GCGGTCG CCGA CGACCGC CGTATCCCGAAGGAG RHA1_ro07099 7598483 - 7598812 + | hypothetical protein RHA1_ro07100 7598925 - 7599104 + | hypothetical protein TERM 2720 7599407 - 7599464 + F 87 -17.8 -2.85668 | gap 3, opp_overlap 7599417 7599421, overlap 7599410 GTGCGGTGGCGAACC GGGGACCGAACTGACGCCGCCCCTGGGCG ACT CGCCCAGGGGCGG-G--AGGTCGATCCGC TATCGTCTACGGATG TERM 2721 7599454 - 7599417 - f 80 -15 -3.06133 | gap 3, opp_overlap 7599407 7599410, overlap 7599421 GAACCGGGGACCGAA CTGACGCCGCCCCTGGGCG ACT CGCCCAGGGGCGG-G--AG GTCGATCCGCTATCG TERM 2722 7599452 - 7599421 - f 100 -23.8 -2.54896 | gap 1, opp_overlap 7599407 7599410, overlap 7599417 CGGGGACCGAACTGA CGCCGCCCCTGGGCG ACT CGCCCAGGGGCGG-G AGGTCGATCCGCTAT TERM 2723 7600814 - 7600778 - g 83 -13 -3.97307 | gap 1, opp_overlap 7600803, overlap 7600772 CGGACTGAAGAACAA GGCGGTCACCGTGCTCG ATCG CGAGCAGGG-GAGCGCC TGGGGAGTGCCCGTG RHA1_ro07101 7599477 - 7600847 + | alpha-ketoglutarate transporter RHA1_ro07102 7602249 - 7601437 - | hypothetical protein TERM 2724 7601702 - 7601724 + g 77 -14.8 -3.20382 | TGTGGCGAAAGTCGG GCTGCCGCGG CAT CTGCGGCGGC TTCATCGATATCAGC RHA1_ro07103 7603778 - 7602555 - | NADH dehydrogenase RHA1_ro07104 7604119 - 7603859 - | acyl-CoA-binding protein TERM 2725 7604760 - 7604743 - g 73 -10.5 -3.86202 | overlap 7604723 GTCGAGGAGATGAAA CCGGCGC GCGG GCACCGG CACGACAAGGAGCGT RHA1_ro07105 7604365 - 7605687 + | cyclopropane-fatty-acyl-phospholipid synthase RHA1_ro07106 7605782 - 7606699 + | esterase RHA1_ro07107 7607226 - 7606702 - | hypothetical protein RHA1_ro07108 7608376 - 7607324 - | AraC family transcriptional regulator RHA1_ro07109 7608435 - 7609073 + | cyanamide hydratase RHA1_ro07110 7609131 - 7609568 + | hypothetical protein RHA1_ro07111 7609600 - 7610061 + | hypothetical protein RHA1_ro07112 7610114 - 7611658 + | flavin-binding monooxygenase RHA1_ro07113 7611655 - 7612587 + | metal-dependent hydrolase RHA1_ro07114 7612584 - 7613687 + | iron-sulfur oxidoreductase RHA1_ro07115 7613684 - 7614196 + | hypothetical protein TERM 2726 7614486 - 7614512 + G 70 -12.9 -3.35679 | opp_overlap 7614481 7614502 CCTTGGAACACCTCG CGTGGGCGGCG AAGAA CGCCGCCCGGG TTCTGGGTCGGCGCA RHA1_ro07116 7614323 - 7614646 + | aldehyde dehydrogenase RHA1_ro07117 7614753 - 7615724 + | short chain dehydrogenase RHA1_ro07118 7615721 - 7617562 + | long-chain-fatty-acid--CoA ligase TERM 2727 7618414 - 7618376 - g 73 -9.5 -3.8647 | gap 1, overlap 7618377 AGCTACCACAGGAAA GGTTGATCTGCGGCGTCG CTGC CGTCGCCGC-GATCGAAC GCGCAGTAGCACTCA RHA1_ro07119 7617613 - 7618782 + | acyl-CoA dehydrogenase RHA1_ro07120 7618870 - 7619142 + | hypothetical protein RHA1_ro07121 7619139 - 7619738 + | hypothetical protein RHA1_ro07122 7620397 - 7619972 - | YigF family translation initiation factor RHA1_ro07123 7620479 - 7621522 + | DNA repair photolyase RHA1_ro07124 7622063 - 7621509 - | hypothetical protein RHA1_ro07125 7622062 - 7622517 + | hypothetical protein RHA1_ro07126 7623251 - 7622535 - | hypothetical protein RHA1_ro07127 7623880 - 7623254 - | ArsR family transcriptional regulator RHA1_ro07128 7624848 - 7623946 - | metalloprotease TERM 2728 7624630 - 7624675 + g 81 -19 -2.71364 | gap 1 GTTCACGTCGCGGTT GGCGTCCG-CGCCGGTCTCGC AGCCG GCGAGGCCGGCGCCGGAATCC TGGTTGGCGGAATCG aspS 7625016 - 7626824 + | aspartyl-tRNA synthetase TERM 2729 7626828 - 7626856 + F 86 -18.1 -2.52464 | opp_overlap 7626824 7626821 GCAGACAAGTAGGCG GGTCCGCCGGCGG TAT CTGCCGGCGGAAC TCGATTGACCGGACG RHA1_ro07130 7626895 - 7627866 + | hypothetical protein TERM 2730 7628084 - 7628042 - g 70 -12.4 -3.37796 | CGGGATCACCTACAA CCCCCTCGACGGATCGGACG CCC CGACCGTGCCGCCGCGGTGG GAGATCGACGCGGTC RHA1_ro07131 7627866 - 7630445 + | hypothetical protein RHA1_ro07132 7630442 - 7631392 + | transglutaminase-like enzyme RHA1_ro07133 7631458 - 7632633 + | hypothetical protein TERM 2731 7632986 - 7633004 + G 71 -11.6 -3.54129 | TGGCGTCGCTGATCT CGGGGGCC ACC GGCCGCCG TTTCGAGGCACTGTC TERM 2732 7633069 - 7633104 + G 72 -13.2 -3.14344 | opp_overlap 7633063, overlap 7633074 7633097 GTCATCGAACTGGCC CGCCGCCGCCTGCTCG CGGG CGAGCAGACGGTGCTG TTCATCGACGAGGTG TERM 2733 7633074 - 7633099 + G 70 -14.7 -2.77523 | opp_overlap 7633063, overlap 7633069 7633097 CGAACTGGCCCGCCG CCGCCTGCTCG CGGG CGAGCAGACGG TGCTGTTCATCGACG RHA1_ro07134 7632688 - 7634124 + | recombination factor protein RarA alaS 7634213 - 7636885 + | alanyl-tRNA synthetase RHA1_ro07136 7636888 - 7637424 + | Holliday junction resolvase-like protein TERM 2734 7638126 - 7638171 + G 77 -14.8 -3.14132 | gap 2 GGCGGTCCCGACGCC CCTGCG-GACTACG-CGGGCCC GGGT GGTCCCGACGTGGTCGTGCAGG TTCATCCCGGCGACA RHA1_ro07137 7637421 - 7639160 + | hypothetical protein aroE 7639150 - 7639977 + | shikimate 5-dehydrogenase RHA1_ro07139 7640012 - 7640671 + | hypothetical protein aroC 7640747 - 7641934 + | chorismate synthase aroK 7641973 - 7642479 + | shikimate kinase TERM 2735 7642744 - 7642726 - g 74 -13.2 -3.36823 | overlap 7642721 TCGCCGAAAAGGGAA TCGATGCG CAC CGCATCGA GATTCCGGACGCGGA TERM 2736 7642880 - 7642931 + G 80 -15.9 -3.15861 | gap 1 CGACCTCGCCGGGTT CGTCGCGGCGACGTGGAT-GCGCG GTGTG CGCGTGATCCACGTGCCCACGACG TTGCTCGCGATGGTG aroB 7642476 - 7643657 + | 3-dehydroquinate synthase TERM 2737 7643720 - 7643672 - T 100 -24 -3.15663 | gap 1, opp_overlap 7643675 7643678, overlap 7643676 ACGTAGCGGCACGAA GCGA-GACGCGGCGGTGTGAGCG AGTG CGCTCACACCGCCGCGTCGTCTG TCGGTGTGGTGAAGC TERM 2738 7643675 - 7643716 + T 100 -30.3 -2.93858 | opp_overlap 7643672 7643676, overlap 7643678 TAGCGGCACGAAGCG AGACGCGGCGGTGTGAGCG AGTG CGCTCACACCGCCGCGTCG TCTGTCGGTGTGGTG TERM 2739 7643715 - 7643676 - T 100 -33.8 -2.56715 | opp_overlap 7643675 7643678, overlap 7643672 AGCGGCACGAAGCGA GACGCGGCGGTGTGAGCG AGTG CGCTCACACCGCCGCGTC GTCTGTCGGTGTGGT TERM 2740 7643678 - 7643713 + T 100 -30.6 -2.70826 | opp_overlap 7643676 7643672, overlap 7643675 CGGCACGAAGCGAGA CGCGGCGGTGTGAGCG AGTG CGCTCACACCGCCGCG TCGTCTGTCGGTGTG RHA1_ro07143 7644491 - 7643745 - | hypothetical protein TERM 2741 7644561 - 7644605 + H 87 -15.1 -3.58536 | opp_overlap 7644554, overlap 7644574 7644575 CTCTGAAACCCGTTC TCGCCA-CCGGACGGGTGCCG TCGAT CCGCGCCC-TCCGGGTGGCGA TTTGCCGGTACGTTT pepQ 7644627 - 7645730 + | Xaa-Pro dipeptidase efp 7645765 - 7646328 + | elongation factor P nusB 7646329 - 7646838 + | transcription antitermination protein NusB RHA1_ro07147 7646981 - 7647610 + | pyrimidine regulatory protein PyrR pyrB 7647611 - 7648555 + | aspartate carbamoyltransferase catalytic subunit pyrC 7648552 - 7649895 + | dihydroorotase RHA1_ro07150 7649898 - 7650458 + | hypothetical protein TERM 2742 7651235 - 7651249 + G 71 -11.4 -3.64487 | opp_overlap 7651233, overlap 7651245 ACCAAGGAAGTCATC GGGCAG GGC CTGCCC TTGTTCGGCATCTGC carA 7650455 - 7651615 + | carbamoyl phosphate synthase small subunit carB 7651615 - 7654983 + | carbamoyl phosphate synthase large subunit pyrF 7654980 - 7655819 + | orotidine-5prime-phosphate decarboxylase RHA1_ro07154 7655946 - 7656266 + | integration host factor gmk 7656275 - 7656898 + | guanylate kinase rpoZ 7656940 - 7657245 + | DNA-directed RNA polymerase omega subunit RHA1_ro07157 7657260 - 7658564 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 2743 7658559 - 7658581 + F 80 -12 -3.71527 | overlap 7658552 CAGCTGTTCCGGACA CTCTGACGGA AAA TCCGGCAGAG TTTCGGTGATTCGAA TERM 2744 7659291 - 7659257 - g 78 -16.4 -3.10796 | opp_overlap 7659257, overlap 7659238 7659260 7659269 GGTCACCATCGAATA CGACGGTGACAAGGCG GTT CGCCTCGACACCGTGG TCATCTCGACGCAGC TERM 2745 7659288 - 7659260 - g 74 -16.7 -2.76468 | opp_overlap 7659257, overlap 7659238 7659257 7659269 CACCATCGAATACGA CGGTGACAAGGCG GTT CGCCTCGACACCG TGGTCATCTCGACGC metK 7658697 - 7659911 + | S-adenosylmethionine synthetase RHA1_ro07159 7659958 - 7661976 + | primosome assembly protein PriA RHA1_ro07160 7662137 - 7663576 + | FAD-dependent monooxygenase RHA1_ro07161 7663716 - 7664372 + | transcriptional regulator RHA1_ro07162 7664471 - 7665448 + | lipase TERM 2746 7665505 - 7665448 - f 100 -19.9 -3.13907 | gap 1, opp_overlap 7665452 7665462, overlap 7665450 7665458 CGACAGCAACAGATA GACCCACGAATGAGGCGGGGAGCCGTGC GCT GTACGGCTCCCCGCTTC-CTCGTGTGTG TGCTACTCCGCCAGT TERM 2747 7665503 - 7665450 - f 100 -22.5 -3.12353 | gap 1, opp_overlap 7665452 7665462, overlap 7665448 7665458 ACAGCAACAGATAGA CCCACGAATGAGGCGGGGAGCCGTGC GCT GTACGGCTCCCCGCTTC-CTCGTGTG TGTGCTACTCCGCCA TERM 2748 7665452 - 7665501 + F 100 -25.9 -2.96216 | gap 1, opp_overlap 7665450 7665448 7665458, overlap 7665462 AGCAACAGATAGACC CACGAATGAGGCGGGGAGCCGTGC GCT GTACGGCTCCCCGCTTCCT-CGTG TGTGTGCTACTCCGC TERM 2749 7665496 - 7665458 - f 93 -18.8 -3.21622 | opp_overlap 7665452 7665462, overlap 7665450 7665448 AGATAGACCCACGAA TGAGGCGGGGAGCCGTGC GCT GTACGGCTCCCCGCTTCC TCGTGTGTGTGCTAC TERM 2750 7665462 - 7665492 + F 100 -24.8 -3.27259 | opp_overlap 7665458 7665450 7665448, overlap 7665452 AGACCCACGAATGAG GCGGGGAGCCGTGC GCT GTACGGCTCCCCGC TTCCTCGTGTGTGTG fmt 7665836 - 7666774 + | methionyl-tRNA formyltransferase RHA1_ro07164 7666771 - 7668198 + | ribosomal RNA small subunit methyltransferase RHA1_ro07165 7668328 - 7669185 + | (+)-trans-carveol dehydrogenase RHA1_ro07166 7669585 - 7669247 - | hypothetical protein rpe 7669644 - 7670327 + | ribulose-phosphate 3-epimerase ribD 7670357 - 7671409 + | riboflavin biosynthesis protein RibD ribE 7671421 - 7672029 + | riboflavin synthase subunit alpha ribA 7672110 - 7673363 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein ribH 7673360 - 7673851 + | riboflavin synthase subunit beta RHA1_ro07172 7673865 - 7674317 + | hypothetical protein uvrC 7674386 - 7676569 + | excinuclease ABC subunit C RHA1_ro07174 7676566 - 7677480 + | hypothetical protein RHA1_ro07175 7677477 - 7678502 + | hypothetical protein TERM 2751 7678856 - 7678891 + G 72 -13.2 -3.14211 | gap 1 CAGGTGGTCGGTGGC AGCGTCGC-CGACGCGG AAG CCGCGTGGCGCGGCGCG TTCCTGGCGCACGGT RHA1_ro07176 7678499 - 7679476 + | hypothetical protein TERM 2752 7679521 - 7679557 + F 90 -16.7 -3.35813 | gap 1, opp_overlap 7679521, overlap 7679508 CCGGTCCCGGACGAA CGGGACGCTCGTTGCG CCAGAT CG-GACGAGCGTCCCG TTCGTTCGGGTCGGG TERM 2753 7679557 - 7679521 - f 80 -14.5 -3.14132 | gap 1, opp_overlap 7679508 7679521 CCGGTCCCGGACGAA CGGGACGCTCGTTGCG CCAGAT CGG-ACGAGCGTCCCG TTCGTTCGGGTCGGG gap2 7679739 - 7680758 + | glyceraldehyde 3-phosphate dehydrogenase pgk 7680776 - 7681987 + | phosphoglycerate kinase tpiA 7681991 - 7682776 + | triosephosphate isomerase secG 7682902 - 7683135 + | preprotein translocase subunit SecG ppc 7683182 - 7685938 + | phosphoenolpyruvate carboxylase pgl 7687003 - 7686260 - | 6-phosphogluconolactonase RHA1_ro07183 7687907 - 7686996 - | hypothetical protein zwf4 7689452 - 7687908 - | glucose-6-phosphate 1-dehydrogenase TERM 2754 7688002 - 7688035 + g 82 -14.5 -3.53343 | GGTTCCGGCCTGCCG TCCGCGGCCCAGTGC TCGA GCACGGGGTCGAGGA TTTCCCAGGACAGTT TERM 2755 7688403 - 7688376 - G 74 -13.4 -3.35679 | gap 1 GGTGCGGAGGTAGAA CGGCACCC-CCGC CCA GCGGCGGGTGTCG ACCTCGAGGGTGATG tal 7690580 - 7689456 - | transaldolase RHA1_ro07186 7692695 - 7690587 - | transketolase TERM 2756 7691831 - 7691862 + g 73 -12.2 -3.39717 | gap 1, overlap 7691834 CCGCGACCTCGTCGG CACCGAGGGCGGCGC CGT GCGCCGCGCCCG-TG TTCATCTTGGTCGGT TERM 2757 7691834 - 7691860 + g 79 -15 -3.26531 | overlap 7691831 CGACCTCGTCGGCAC CGAGGGCGGCGC CGT GCGCCGCGCCCG TGTTCATCTTGGTCG TERM 2758 7693770 - 7693797 + G 77 -15.6 -3.14602 | overlap 7693768 TACCGCAGCGTCCGA GGCGGAGCGG CCGTGAAA CCGCTCCGCC TGTTCCTGCAGTCCA RHA1_ro07187 7692912 - 7693895 + | protoheme IX farnesyltransferase RHA1_ro07188 7694945 - 7693980 - | NADPH:quinone reductase TERM 2759 7695122 - 7695109 - H 74 -2.3 -4.7373 | CGACGCGATCAAAAA GTTCG TGGC CGAGC ACGGCGGTTCCGCCA RHA1_ro07189 7695113 - 7695391 + | hypothetical protein RHA1_ro07190 7696350 - 7695388 - | cytochrome oxidase assembly protein RHA1_ro07191 7697865 - 7696420 - | hypothetical protein RHA1_ro07192 7698662 - 7697862 - | ABC transporter permease RHA1_ro07193 7699603 - 7698659 - | ABC drug resistance transporter, ATP-binding component RHA1_ro07194 7701394 - 7699610 - | hypothetical protein RHA1_ro07195 7701491 - 7702276 + | transcriptional regulator sufB 7702371 - 7703831 + | FeS assembly protein sufD 7703831 - 7705060 + | FeS assembly protein sufC 7705106 - 7705915 + | FeS assembly ATPase sufS 7705922 - 7707181 + | selenocysteine lyase RHA1_ro07200 7707178 - 7707693 + | Fe-S assembly protein TERM 2760 7707824 - 7707804 - g 71 -11.1 -3.61356 | ATTACCGACCCGAAA CGCCTCGAG GAG CTCGAGGAG GCGATGCGTGACGTC RHA1_ro07201 7707690 - 7708109 + | metal-sulfur cluster protein TERM 2761 7708127 - 7708170 + T 100 -38.4 -2.52464 | overlap 7708166 ACCCACCACGGGTAA CGCGGAGGGGCTCGGCGAGA TGCA TCTCGCCGAGCCCCTCCGCG TCGGTTCAGGCGCGC RHA1_ro07202 7709072 - 7708176 - | DNA binding protein, Ku-like RHA1_ro07203 7710396 - 7709104 - | lycopene beta cyclase TERM 2762 7711751 - 7711727 - g 86 -12.7 -4.19577 | CAATGCGGAAAAGAA GGCCGGTGCGC TGC GCGCGCAGGCC GCGAAGCTCGGCGCG RHA1_ro07204 7710798 - 7712528 + | ABC transporter, ATP-binding protein RHA1_ro07205 7712566 - 7712817 + | transcriptional regulator RHA1_ro07206 7713409 - 7712843 - | transcriptional regulator TERM 2763 7713536 - 7713480 - R 74 -13.2 -3.18582 | gap 3, opp_overlap 7713480 CACCTCATGCACTAA GCGCGCACGACCATGTGTCCGGGACGG TGAGAT CCG-CTC-GA-AGATGGTCGTGCGCGC TTAGTGCCTGTCCTG TERM 2764 7713480 - 7713536 + r 86 -15.4 -3.20858 | gap 3, opp_overlap 7713480 CACCTCATGCACTAA GCGCGCACGACCATGTGTCCGGGACGG TGAGAT CCG-CTCG-A-AGATGGTCGTGCGCGC TTAGTGCCTGTCCTG TERM 2765 7713573 - 7713560 - R 76 -9.5 -4.07568 | opp_overlap 7713561, overlap 7713561 TGTCCTGGCCGAAAA CGCGC ACAG GCGCG GTAGCGCCTAGAGCG acnA2 7716394 - 7713590 - | aconitate hydratase TERM 2766 7714820 - 7714844 + g 73 -12.1 -3.44527 | overlap 7714823 GAAGCCGAGCTTCTC CAGGTACGGCC AGA GGCCGGACTTG TTGTAGTAGTCGGTG TERM 2767 7714823 - 7714841 + g 73 -10.2 -3.85864 | overlap 7714820 GCCGAGCTTCTCCAG GTACGGCC AGA GGCCGGAC TTGTTGTAGTAGTCG RHA1_ro07208 7716700 - 7717305 + | hypothetical protein TERM 2768 7718524 - 7718510 - g 72 -9.2 -3.99324 | TGGGAGGAGCAGAAA CGCGCC GAG GACGCG CAGAAGGCGGCCATC RHA1_ro07209 7717664 - 7719187 + | hypothetical protein RHA1_ro07210 7719392 - 7720567 + | MoxR family transcriptional regulator RHA1_ro07211 7720564 - 7721538 + | hypothetical protein RHA1_ro07212 7721535 - 7722515 + | hypothetical protein fabG1 7722579 - 7723328 + | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro07214 7723376 - 7724173 + | enoyl-(acyl carrier protein) reductase hemH 7724215 - 7725324 + | ferrochelatase RHA1_ro07216 7726153 - 7725290 - | hypothetical protein RHA1_ro07217 7726167 - 7727006 + | hypothetical protein RHA1_ro07218 7727024 - 7727446 + | hypothetical protein RHA1_ro07219 7727447 - 7728649 + | hypothetical protein RHA1_ro07220 7729367 - 7728630 - | thioesterase RHA1_ro07221 7730061 - 7729372 - | aminotransferase, C-terminal RHA1_ro07222 7731157 - 7730342 - | hypothetical protein RHA1_ro07223 7731585 - 7731160 - | hypothetical protein RHA1_ro07224 7731894 - 7731616 - | hypothetical protein RHA1_ro07225 7731905 - 7733650 + | hypothetical protein RHA1_ro07226 7733860 - 7733696 - | hypothetical protein RHA1_ro07227 7734035 - 7735651 + | hypothetical protein RHA1_ro07228 7736171 - 7735920 - | acyl carrier protein RHA1_ro07229 7737017 - 7736490 - | hypothetical protein RHA1_ro07230 7737595 - 7737014 - | hypothetical protein RHA1_ro07231 7738338 - 7737655 - | hypothetical protein RHA1_ro07232 7739236 - 7738415 - | hypothetical protein TERM 2769 7739212 - 7739245 + g 71 -9.5 -3.76482 | gap 1, overlap 7739205 7739209 7739202 CGGTGCGATCGGTGA CCACCGGTTCGTGCGC AAT GCGCATG-ACCTGAGG TTATTCATCGTGTGG TERM 2770 7740094 - 7740049 - g 74 -14 -3.33162 | gap 3, overlap 7740024 7740074 CACCGCATTTCACAA CGCCG-GCGCGTCCGACGCCGAG GAA CTCGGCG-CGG-CGATCGCGGCG GGCCTCGAATACCTG mutA 7739354 - 7741270 + | methylmalonyl-CoA mutase small subunit mutB 7741267 - 7743558 + | methylmalonyl-CoA mutase RHA1_ro07235 7743560 - 7744564 + | arginine/ornithine transport system ATPase iunH 7745590 - 7744553 - | purine nucleosidase RHA1_ro07237 7746099 - 7745587 - | redox protein RHA1_ro07238 7746145 - 7746774 + | hypothetical protein RHA1_ro07239 7748065 - 7746758 - | acyl-CoA transferase/ carnitine dehydratase RHA1_ro07240 7749026 - 7748166 - | hypothetical protein RHA1_ro07241 7750119 - 7749031 - | hypothetical protein RHA1_ro07242 7751482 - 7750112 - | hypothetical protein TERM 2771 7750671 - 7750707 + g 76 -13.7 -3.53012 | overlap 7750672 ACCGCGAACGCGTGC TTGATGTGGACGACGCC GAC GGCGTCGTCCAGGTCGC TTTCGACGACGGGGA TERM 2772 7750672 - 7750706 + g 78 -17.2 -2.71712 | overlap 7750671 CCGCGAACGCGTGCT TGATGTGGACGACGCC GAC GGCGTCGTCCAGGTCG CTTTCGACGACGGGG TERM 2773 7751769 - 7751730 - R 100 -23 -2.81133 | opp_overlap 7751730, overlap 7751760 7751762 GAGCGACCCATGATA CCGGTGGATGTCCGGTTC CGTG GAACAGGACACCCACCGG CGCATCAGGACGCGG guaB2 7753224 - 7751788 - | inositol-5-monophosphate dehydrogenase RHA1_ro07244 7754106 - 7753228 - | hypothetical protein TERM 2774 7753995 - 7754027 + g 83 -20.5 -2.78384 | GCAGGGTGGTCATCA GCGCGGCGTCCTCGG GGA CGGCGGACGCCGCGC TCTGCTGGGCGACCG RHA1_ro07245 7755509 - 7754112 - | ATP-dependent RNA helicase gnd3 7757057 - 7755606 - | 6-phosphogluconate dehydrogenase TERM 2775 7756221 - 7756184 - G 74 -14.7 -3.01712 | GGGCGCGGGCGAACA CGGCCTCGGCGATCCCG GTGA CGGGGACACCGAGGTCG AGCGCGGACTTGACG TERM 2776 7756328 - 7756368 + g 77 -14.8 -3.19192 | gap 1, overlap 7756317 7756358 TCTGCCGCAGCACCT CCGCGGTGATCTCGACGAG GTAG CTC-TCGAGGTCGCCGCCG TTCCATTCGGTGAAC TERM 2777 7757175 - 7757130 - R 100 -19.7 -3.75332 | opp_overlap 7757138, overlap 7757132 7757134 7757135 7757138 ACCGCCTAAGCCAAA CATACGAAGGCCGGCCGTCGC ACAT GCGACGGCCGGCCTTCTCTCA CACTTCGATATTCGG TERM 2778 7757173 - 7757132 - R 100 -22.3 -3.46068 | opp_overlap 7757138, overlap 7757130 7757134 7757135 7757138 CGCCTAAGCCAAACA TACGAAGGCCGGCCGTCGC ACAT GCGACGGCCGGCCTTCTCT CACACTTCGATATTC TERM 2779 7757171 - 7757134 - R 100 -27.1 -3.30106 | opp_overlap 7757138, overlap 7757132 7757130 7757135 7757138 CCTAAGCCAAACATA CGAAGGCCGGCCGTCGC ACAT GCGACGGCCGGCCTTCT CTCACACTTCGATAT TERM 2780 7757170 - 7757135 - R 100 -30.6 -2.57581 | opp_overlap 7757138, overlap 7757134 7757132 7757130 7757138 CTAAGCCAAACATAC GAAGGCCGGCCGTCGC ACAT GCGACGGCCGGCCTTC TCTCACACTTCGATA TERM 2781 7757167 - 7757138 - R 100 -26.5 -3.42659 | opp_overlap 7757138, overlap 7757135 7757134 7757132 7757130 AGCCAAACATACGAA GGCCGGCCGTCGC ACAT GCGACGGCCGGCC TTCTCTCACACTTCG TERM 2782 7757138 - 7757167 + r 100 -26.5 -3.50447 | opp_overlap 7757138 7757135 7757134 7757132 7757130 AGCCAAACATACGAA GGCCGGCCGTCGC ACAT GCGACGGCCGGCC TTCTCTCACACTTCG RHA1_ro07247 7759108 - 7757210 - | ATP-dependent RNA helicase RHA1_ro07248 7760287 - 7759334 - | hypothetical protein RHA1_ro07249 7760727 - 7760314 - | transcriptional regulator RHA1_ro07250 7760903 - 7763491 + | hypothetical protein fepC 7764331 - 7763498 - | Fe(3+) enterobactin transport ATP-binding protein fepG 7765416 - 7764328 - | Fe(3+) enterobactin transport system permease protein TERM 2783 7765049 - 7765000 - G 72 -14.1 -3.15861 | gap 1 GAGGAGGCCGACGAA GCTGCCGCCGCCGCCGAGGACG ATCAGCG CGACCGCGGCGGCGCTGGC-GC CGGACGTGATGCCGA fepD 7766492 - 7765431 - | Fe(3+) enterobactin transport system permease protein RHA1_ro07254 7767086 - 7767859 + | hypothetical protein TERM 2784 7767970 - 7768015 + F 100 -20.5 -3.5393 | gap 1, overlap 7767973 GACTCCCAGGTCCAT CCCA-CGGCGGGCCTCACGCTG ACA CAGTGTGAGGCCCGCCGATCCG TTTGCCCCACCTGCT TERM 2785 7767973 - 7768011 + F 100 -26.8 -2.64155 | overlap 7767970 TCCCAGGTCCATCCC ACGGCGGGCCTCACGCTG ACA CAGTGTGAGGCCCGCCGA TCCGTTTGCCCCACC RHA1_ro07255 7768110 - 7768571 + | thioesterase TERM 2786 7768588 - 7768624 + T 100 -29.6 -3.08813 | GACCACCCGCGGTCG GCGGAGGGGACGGACC CGACA GGTCCGTCCCCTCCGC TCTGTTCACGTCACG ndh1 7770046 - 7768652 - | NADH dehydrogenase TERM 2787 7770067 - 7770091 + H 77 -12.1 -3.61715 | opp_overlap 7770067 7770065 GCTCCTCGATAAATA GGCGACTCCTG TCA CGGTAGTCGCC TTGTTCCCGAGCGTC RHA1_ro07257 7770092 - 7770370 + | hypothetical protein RHA1_ro07258 7770940 - 7770416 - | hypothetical protein RHA1_ro07259 7771392 - 7771042 - | transposase TERM 2788 7771073 - 7771094 + g 75 -6.5 -4.5123 | gap 1 GCTGATTCTGTCTGC GCGAGCGCCG TAG CGGGG-TCGC TTTCTTTCGTGGGTT TERM 2789 7771679 - 7771660 - g 73 -7.8 -4.15044 | CGGGTCCTCAAGAAA GTCGCGGA TGCG TACGCGAC CCGGAAGGCGAACCT RHA1_ro07260 7771444 - 7772643 + | transposase RHA1_ro07261 7773788 - 7772949 - | hydrolase RHA1_ro07262 7774114 - 7773791 - | hypothetical protein RHA1_ro07263 7774785 - 7774111 - | branched chain amino acid ABC transporter RHA1_ro07264 7774879 - 7775433 + | DNA-binding protein RHA1_ro07265 7775553 - 7775912 + | hypothetical protein TERM 2790 7775975 - 7776026 + G 73 -16.6 -2.52464 | GTCGCGCGGTGTCCG TCCTGGTCGGGGTGTTCGGCGA CATCGACA TCGCCGAGGACGCCGTCCAGGA TGCGTTCACCGAGGC RHA1_ro07266 7775914 - 7777125 + | sigma factor, includes region 2 RHA1_ro07267 7777615 - 7777139 - | hypothetical protein RHA1_ro07268 7778956 - 7777757 - | hypothetical protein TERM 2791 7778467 - 7778486 + g 72 -9.3 -4.07568 | GCTGCCGCCATCGAC CGGCGAT GTTCGG ATCGCCG TTTTCGAGCAGCGCG TERM 2792 7779071 - 7779024 - R 93 -18.5 -3.30243 | AGTCACGGTGTACAA CGCGATCGGGCGCCAGATC TACGACTTCG GTTCCGGCGCCCAATCGCG TTCCCCGTGAATCTC RHA1_ro07269 7779968 - 7779042 - | zinc ABC transporter permease RHA1_ro07270 7780712 - 7779975 - | ABC metal transporter, ATP-binding component RHA1_ro07271 7781620 - 7780709 - | ABC metal ion transporter, substrate-binding protein RHA1_ro07272 7782395 - 7781748 - | hypothetical protein ndh2 7783888 - 7782497 - | NADH dehydrogenase TERM 2793 7782790 - 7782829 + g 75 -15.8 -2.94144 | gap 1, overlap 7782790 7782791 TTGCCATCGCGCCTT TGTCGCGGTACCGGAAGGG GTT CCGTTCCGGTACCG-GGCG TCCTTTGGCTGCGGC RHA1_ro07274 7784045 - 7784590 + | AsnC family transcriptional regulator RHA1_ro07275 7786686 - 7785781 - | ATP/GTP-binding protein RHA1_ro07276 7789084 - 7786730 - | transposase TERM 2794 7786919 - 7786939 + g 79 -11.1 -3.97307 | GGCCCGTTTGAGCAG GTCGGCGAC AGC GTCGGCGAC TTCTTCTTCGGTCGC RHA1_ro07277 7789696 - 7789481 - | hypothetical protein TERM 2795 7789667 - 7789702 + g 77 -15.6 -3.12446 | gap 1, overlap 7789658 GGCCGCCGCGATTGT GCGCATGATGCGGATCG AGT CGATCTGCAT-GTGCGC TTGGCTGCCTTTGTC TERM 2796 7789900 - 7789956 + H 91 -20 -2.56271 | gap 1, overlap 7789904 7789906 TCGACGGGCGGCGGG CTGGCCCCGGGCCCCGGGCCCCGGGCC CCGG GGATCGGGGATCGGGGGCC-GGGCTGG GTGTTGTGGTGCCGG TERM 2797 7789904 - 7789959 + H 93 -18.8 -3.41527 | gap 1, overlap 7789900 7789906 CGGGCGGCGGGCTGG CCCCGGGCCCCGGGCCCCGGGCCCCGG GGA TCGGGGATCGGGGGCC-GGGCTGGGTG TTGTGGTGCCGGTTC TERM 2798 7789906 - 7789957 + H 100 -20 -3.27653 | gap 1, overlap 7789900 7789904 GGCGGCGGGCTGGCC CCGGGCCCCGGGCCCCGGGCCCCGG GGA TCGGGGATCGGGGGCC-GGGCTGGG TGTTGTGGTGCCGGT TERM 2799 7791419 - 7791405 - H 76 -9.2 -4.08216 | overlap 7791406 CGAGCGTCCGGAAAA GCGGGG GAA CCCCAC CCCCTTCGGGGGTCA TERM 2800 7791435 - 7791465 + H 80 -15.5 -2.82635 | gap 2, opp_overlap 7791406 CCCCTTCGGGGGTCA CTCCCCCC--GGCCC TTC GGGCCTAGGGGGGAG TGTACTACTAGAAAT TERM 2801 7791552 - 7791573 + H 76 -13.7 -3.16564 | gap 1 TGTCGACCGCGCAGC GGG-GCGCCG GTT CGGCGCGCCC TTCGTGGACTCGCCG RHA1_ro07278 7793331 - 7793558 + | hypothetical protein TERM 2802 7793708 - 7793672 - Tf 89 -16.6 -3.29461 | gap 2, overlap 7793673 TAACCCTCGTGACAA CCCCCGGGCGCCCGCACC GCG GGTGCGGT-GCC-GGGGG CCGGCCAAGCGACTA TERM 2803 7793708 - 7793673 - Tf 81 -16.8 -2.57463 | gap 1, overlap 7793672 AACCCTCGTGACAAC CCCCGGGCGCCCGCACC GCG GGTGCGGT-GCCGGGGG CCGGCCAAGCGACTA TERM 2804 7795722 - 7795698 - Tf 100 -21.5 -4.07568 | CTGCTCGTGGGAAAA GGTGCACGGCG AGC CGCCGTGCACC CATCCCCGTGCCCCT RHA1_ro07279 7797831 - 7796317 - | hypothetical protein RHA1_ro07280 7797826 - 7798584 + | dehydrogenase TERM 2805 7798901 - 7798917 + Tr 71 -7.9 -4.11216 | TGGGCGTCATCGCGG GGCCGCT GCT GGCGGTC TTTTCCAGCTGCCGG TERM 2806 7799099 - 7799089 - TR 77 -5.4 -4.67904 | CAGCAACGCGAAAAA CGAT TCC ATCG CCGCATTGTCACCCA RHA1_ro07281 7800619 - 7799447 - | hypothetical protein RHA1_ro07282 7801210 - 7800644 - | hypothetical protein RHA1_ro07283 7802158 - 7803375 + | hypothetical protein SEQUENCE gi|111024785|ref|NC_008269.1| Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence (length 1123075) RHA1_ro08001 377 - 853 + | hypothetical protein RHA1_ro08002 1418 - 1107 - | hypothetical protein RHA1_ro08003 2331 - 1531 - | hypothetical protein RHA1_ro08004 2727 - 2350 - | hypothetical protein TERM 1 2578 - 2595 + g 78 -6.9 -4.60797 | overlap 2580 GGGCCCGTCTTCCTT CGCCCAC TTGT GTGGGAG TTTTCTATCTCGCAC RHA1_ro08005 3551 - 3213 - | hypothetical protein RHA1_ro08006 4222 - 3620 - | growth inhibitor RHA1_ro08007 4285 - 4869 + | hypothetical protein TERM 2 5129 - 5147 + G 72 -13.8 -3.23216 | overlap 5131 CGGGCTGATCGGATT CGCCGCCG CCT CGGCGGTG TTCGTCATCGTCGAC RHA1_ro08008 4866 - 6065 + | tetracycline resistance protein RHA1_ro08009 7424 - 6420 - | hypothetical protein RHA1_ro08010 8123 - 7785 - | hypothetical protein TERM 3 7811 - 7863 + g 73 -12.5 -3.42574 | CGTTGTCGGGTACGC CGTGTCCGTCGTCGGTGCCCGGCCC GTC GGTCTTGGTGCCGACGACGGTGAAG TTCTGGTCCAGTTGG RHA1_ro08011 9506 - 8211 - | sensory histidine kinase RHA1_ro08012 10251 - 9574 - | response regulator, two-component system RHA1_ro08013 11337 - 10780 - | integrase RHA1_ro08014 13005 - 11503 - | hypothetical protein TERM 4 12139 - 12081 - G 74 -14.5 -3.03243 | gap 2 ATTCACGGGCGAACA GCGGGA-CGGCGAGCAG-GGCCGCAGCCG CGA CGGCCGCGACGGCTGCCCACCGCTTCCGA GGTCCCGGCGTCGTC RHA1_ro08015 14346 - 13018 - | hypothetical protein TERM 5 13373 - 13400 + g 72 -15.5 -2.82635 | AACTCGGCGACCCTG CCGCGGCCGGG ACGGTC CCCGGCCGCCG TCTCCTGCTCGGCGT RHA1_ro08016 15081 - 14380 - | hypothetical protein TERM 6 15490 - 15524 + H 77 -13.5 -3.34517 | overlap 15489 CCCTGACGGACTTTC GGCAGCCTGCCGACG ACGGG CGTTGGGAGGCCGCC TGTTTGCCGAACCGT RHA1_ro08017 15652 - 15939 + | hypothetical protein TERM 7 16940 - 16908 - g 82 -19.8 -2.62263 | overlap 16882 ACCTCCGCTACATCA CGCAGGCCGGCGGG CGGCT CCCGCCGGACCGCG TCCGAACCTATGCGG RHA1_ro08018 16166 - 17068 + | long chain acyl-CoA synthetase RHA1_ro08019 18570 - 17089 - | aldehyde dehydrogenase RHA1_ro08020 19673 - 19053 - | transposase RHA1_ro08021 20314 - 19724 - | hypothetical protein RHA1_ro08022 21234 - 20353 - | hypothetical protein RHA1_ro08023 21803 - 21492 - | transposase RHA1_ro08024 22048 - 22755 + | transposase, N-terminal RHA1_ro08026 24479 - 23100 - | RNA-directed DNA polymerase (reverse transcriptase) RHA1_ro08025 22752 - 23321 + | transposase, C-terminal RHA1_ro08027 25031 - 25747 + | hypothetical protein RHA1_ro08028 25818 - 26201 + | hypothetical protein RHA1_ro08029 26765 - 26502 - | transposase TERM 8 26929 - 26975 + r 81 -13.1 -3.64703 | gap 2, opp_overlap 26942 26944 AGTCGCTGGTGGAGA GTCCGTGCAGATACAGCGGCGGC AGC GCC-TCGCTG-ACCTGCGTGGAC TTTACGTGCCCAGGC RHA1_ro08030 27216 - 26977 - | transposase RHA1_ro08031 27361 - 28041 + | transcriptional regulator RHA1_ro08032 28685 - 28140 - | hypothetical protein RHA1_ro08033 28886 - 29179 + | hypothetical protein RHA1_ro08034 29674 - 30405 + | phenylacetic acid degradation protein RHA1_ro08035 30405 - 30677 + | hypothetical protein RHA1_ro08036 30703 - 31008 + | hypothetical protein RHA1_ro08037 31114 - 31932 + | phosphotransferase RHA1_ro08038 31929 - 32903 + | oxidoreductase RHA1_ro08039 33066 - 33764 + | enoyl-CoA hydratase TERM 9 34139 - 34111 - T 74 -5.1 -4.57482 | overlap 34113 GGAGTCACAAAGAAA GTTGAGGGGAACG GAC CGTCCACCGCAGC GCCTCCGCCTGCGCC RHA1_ro08040 34439 - 34191 - | hypothetical protein RHA1_ro08041 35557 - 34700 - | transcriptional regulator RHA1_ro08042 36074 - 36562 + | hypothetical protein RHA1_ro08043 37789 - 36902 - | hypothetical protein etbD1 38685 - 37861 - | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase RHA1_ro08045 39012 - 39212 + | transposase RHA1_ro08046 39430 - 40419 + | quinone oxidoreductase RHA1_ro08047 41154 - 40693 - | hypothetical protein RHA1_ro08048 42398 - 41601 - | hypothetical protein TERM 10 43019 - 43039 + r 79 -11.1 -3.8211 | CGGGATCGTCGGTCG CCAGGTGTC GCT GACACCCGG TTCTTGTCCGTCAGC RHA1_ro08049 43960 - 43331 - | enoyl-CoA hydratase RHA1_ro08050 44174 - 45712 + | medium-chain acyl-CoA ligase bphT1 46362 - 45733 - | response regulator, two-component system bphS1 51155 - 46359 - | sensor kinase, two-component system TERM 11 50384 - 50407 + g 74 -11 -3.73224 | gap 1 CGACCACCGCCTCGA GCGCTG-CGAG CAC CTCGTCGGCGC TTTCGTAGCGGATCG RHA1_ro08053 51569 - 51336 - | hypothetical protein bphB1 52597 - 51782 - | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase bphC1 53588 - 52635 - | 2,3-dihydroxybiphenyl 1,2-dioxygenase TERM 12 53488 - 53510 + g 79 -4.7 -4.68593 | GCCGAATTCTCGCTG CTCGAGGCC TCCAT GGCCCCCAG TTTTTCCGTCATGAA RHA1_ro08056 53634 - 53885 + | hypothetical protein bphAd 55140 - 53899 - | biphenyl 2,3-dioxygenase, reductase bphAc 55466 - 55137 - | biphenyl 2,3-dioxygenase, ferredoxin component bphAb 56032 - 55469 - | biphenyl 2,3-dioxygenase beta subunit bphAa 57498 - 56116 - | biphenyl 2,3-dioxygenase alpha subunit RHA1_ro08061 57761 - 57495 - | hypothetical protein RHA1_ro08062 60014 - 57945 - | sensor kinase RHA1_ro08063 60735 - 60331 - | hypothetical protein RHA1_ro08064 60748 - 61101 + | hypothetical protein RHA1_ro08065 62087 - 61062 - | AraC family transcriptional regulator TERM 13 61290 - 61273 - G 75 -9.8 -4.09864 | AGGTACTCGCGAAAA CCGCGC TGCAGT GCGCGG ACGCCCACACCTACT RHA1_ro08066 63193 - 62261 - | AraC family transcriptional regulator RHA1_ro08067 63621 - 64592 + | cytochrome P450, reductase and ferredoxin RHA1_ro08068 64668 - 65990 + | cytochrome P450 CYP116 TERM 14 66095 - 66049 - f 100 -22.3 -2.66291 | gap 1 CAGAGAGTGACACGA CGGCAGGTGGTGCCGTGGGTCG TACC CACCCCACGGCGCCACC-GCCG CCATCACCAATCGTC RHA1_ro08069 66128 - 66985 + | catechol 1,2 dioxygenase RHA1_ro08070 67020 - 67325 + | ethyl tert-butyl ether degradation protein RHA1_ro08071 67606 - 68655 + | hypothetical protein RHA1_ro08072 68814 - 69332 + | hypothetical protein TERM 15 69342 - 69389 + F 80 -15.4 -2.90075 | opp_overlap 69340 69337 GTCTGACACACCACC TCCAGCCCGCGCAGGTCGACGG CGCT CCATCGACCTGCGCGGGCACCC TCTCGTTAGCAGCGC RHA1_ro08073 69420 - 69872 + | hypothetical protein RHA1_ro08074 69983 - 70687 + | chlorite dismutase TERM 16 72804 - 72777 - g 74 -12.6 -3.53811 | CTGACCTCGCCGAAA CCCTGGCCGGCG TCGC CGGCGGTCAGGG CCTGCTCGAGCAGAT pknK1 70898 - 74440 + | MalT family transcriptional regulator TERM 17 74468 - 74442 - f 77 -11.4 -3.74872 | ACGCACCCGACTAAA CCACCGGCGGCC GGA GGCCACCCGAGG GGACGTCGAGGGGCG RHA1_ro08076 74646 - 75215 + | phenol 2-monoxygenase, reductase component RHA1_ro08077 75254 - 76873 + | phenyl hydroxylase, oxygenase component RHA1_ro08078 77024 - 77536 + | ferredoxin RHA1_ro08079 77581 - 78495 + | catechol 2,3 dioxygenase RHA1_ro08080 78685 - 80118 + | transposase, IS4 RHA1_ro08081 80273 - 81106 + | alpha/beta-fold C-C bond hydrolase TERM 18 81175 - 81130 - f 81 -13.2 -3.59279 | overlap 81106 81126 81131 CACGACAACAATGAA GGGTGTTCGCGGCCGTCGCA GTTCAG CACGGCGGCCGCGAACATCG TCGCCGCATCAGAAG TERM 19 81174 - 81131 - f 81 -16.7 -2.74845 | overlap 81106 81130 81126 ACGACAACAATGAAG GGTGTTCGCGGCCGTCGCA GTTCAG CACGGCGGCCGCGAACATC GTCGCCGCATCAGAA RHA1_ro08082 81208 - 81459 + | WhiB family transcriptional factor bphF3 83341 - 82313 - | 4-hydroxy-2-ketovalerate aldolase TERM 20 83199 - 83250 + g 70 -12.8 -3.35775 | overlap 83198 83200 CCGGCGAGTCCGTCG CCGTGAGCGACCTCGATGCCGTCG ACGC CGGCGGCGTCGAGCGCGGCCACGA TCTTTCCGACGTCGT TERM 21 83200 - 83249 + g 73 -16.3 -2.61144 | overlap 83199 83198 CGGCGAGTCCGTCGC CGTGAGCGACCTCGATGCCGTCG ACGC CGGCGGCGTCGAGCGCGGCCACG ATCTTTCCGACGTCG bphG3 84321 - 83338 - | acetaldehyde dehydrogenase bphE3 85148 - 84327 - | 2-oxopent-4-enoate hydratase RHA1_ro08086 85296 - 86063 + | IclR family transcriptional regulator RHA1_ro08087 86186 - 86710 + | hypothetical protein RHA1_ro08088 87603 - 86740 - | LuxR family transcriptional regulator RHA1_ro08089 88103 - 87768 - | hypothetical protein TERM 22 88127 - 88158 + r 100 -20.9 -2.80113 | overlap 88129 CGTGCAGGGCGCGCA GAGGCCGGGGCGG CGTGGT TCGCCCCGGCCTC TGTGGTGGACTGCTA TERM 23 88129 - 88156 + r 88 -17.7 -2.94747 | overlap 88127 TGCAGGGCGCGCAGA GGCCGGGGCGG CGTGGT TCGCCCCGGCC TCTGTGGTGGACTGC aldH1 89676 - 88171 - | aldehyde dehydrogenase RHA1_ro08091 90568 - 89723 - | hypothetical protein RHA1_ro08092 91287 - 90670 - | hypothetical protein TERM 24 91104 - 91075 - G 77 -3.3 -4.70659 | overlap 91076 GGTCAGATGCAAAAA GCCCGGCAGCTTC ATCA GGTGGTGCCGGGT GTCGGCGAAGACCAC RHA1_ro08093 91387 - 92892 + | MocR family transcriptional regulator RHA1_ro08094 93367 - 92942 - | hypothetical protein RHA1_ro08095 93758 - 93444 - | hypothetical protein RHA1_ro08096 94767 - 93934 - | hypothetical protein TERM 25 94824 - 94869 + r 72 -13.1 -3.14132 | opp_overlap 94823, overlap 94837 GGTGAAACATCGAAG CGGCGAGGATCAGGCGTTCGC CTGT GCGGCGGCCGGTTCCTTGCCG TTGGTGGAGACCGGA RHA1_ro08097 95456 - 94833 - | hypothetical protein RHA1_ro08098 96431 - 95673 - | transcriptional regulator RHA1_ro08099 96539 - 96814 + | hypothetical protein TERM 26 96895 - 96940 + F 100 -15.3 -4.66163 | opp_overlap 96886, overlap 96896 TTAACACCTCACCAC CGCCTCATCGGCGGGACGCAG TTCG CGTCGCCTCGCCGATGAGGCA TTTTTCGATCCACAT TERM 27 96896 - 96939 + F 93 -18.8 -3.39216 | opp_overlap 96886, overlap 96895 TAACACCTCACCACC GCCTCATCGGCGGGACGCAG TTCG CGTCGCCTCGCCGATGAGGC ATTTTTCGATCCACA RHA1_ro08100 97093 - 97458 + | hypothetical protein RHA1_ro08101 97513 - 98145 + | hypothetical protein RHA1_ro08102 99192 - 98260 - | AraC family transcriptional regulator RHA1_ro08103 99373 - 99774 + | hypothetical protein RHA1_ro08104 99964 - 100251 + | hypothetical protein RHA1_ro08105 100400 - 101386 + | hypothetical protein TERM 28 102025 - 101998 - g 71 -10.6 -3.79519 | AACGCCACCACCAAA GCGCACAGGTTC GTGC GAACGTGTGCAC GGTGACGCCTGAAAT RHA1_ro08106 101557 - 102030 + | hypothetical protein RHA1_ro08107 103451 - 102042 - | hypothetical protein RHA1_ro08108 103966 - 103652 - | hypothetical protein RHA1_ro08109 105155 - 103956 - | integrase/recombinase TERM 29 105320 - 105306 - H 70 -5.6 -4.26871 | overlap 105308 105309 CAACCGAGCAACAAA CATGGG CCA CCCAGG CGGGCCGATCCTCAG RHA1_ro08110 105862 - 106404 + | hypothetical protein TERM 30 106418 - 106397 - T 74 -2.3 -4.731 | gap 1, overlap 106401 AAGTGACGAACAAAA TGAAGTGAGA CAC TCGCACT-CA CCTTGGATGTGTCCC RHA1_ro08111 106713 - 106450 - | hypothetical protein RHA1_ro08112 107254 - 106742 - | MerR family transcriptional regulator TERM 31 107162 - 107120 - G 83 -14.7 -3.56643 | gap 1, opp_overlap 107119 107120, overlap 107124 GTGACACCTTTCAAA CGGACAGGGCCCCCGGCGCC GTGA GGCACCGGGGG-CCGGAGCG GGTTTCACTACCTTA TERM 32 107158 - 107124 - G 77 -17.1 -2.64472 | gap 1, opp_overlap 107120 107119, overlap 107120 CACCTTTCAAACGGA CAGGGCCCCCGGCGCC GTGA GGCACCGGGGG-CCGG AGCGGGTTTCACTAC RHA1_ro08113 107912 - 107583 - | hypothetical protein RHA1_ro08114 108183 - 107929 - | protein precursor Lsr2 RHA1_ro08115 108984 - 108412 - | hypothetical protein RHA1_ro08116 110196 - 109951 - | hypothetical protein RHA1_ro08117 110508 - 111029 + | hypothetical protein RHA1_ro08118 111230 - 111985 + | beta-lactamase RHA1_ro08119 113387 - 112173 - | hypothetical protein TERM 33 115543 - 115557 + G 74 -12.8 -3.62096 | CACCATCGGCCAGGC CCGGGG TAT CCCCGG TTTCACCTCGTAGGA RHA1_ro08120 113771 - 115570 + | hypothetical protein RHA1_ro08121 115768 - 118239 + | peptidase/ glycoside hydrolase TERM 34 118754 - 118705 - g 72 -13.4 -3.21099 | overlap 118683 GCGGCCGACCAGGAA CG-CGCACTCCGGGCGGCCGCTGC CGCC GCCGCGGCGGCCCGCCG-GCGACG ACACGCGGACGACAA RHA1_ro08122 118342 - 120141 + | serine peptidase RHA1_ro08123 120155 - 121462 + | hypothetical protein TERM 35 122084 - 122069 - f 74 -10.4 -3.81447 | GACACCGGAGAACAA GCTCGG TGTT CCGAGC GCACCAACACAACCG TERM 36 122267 - 122217 - g 70 -12.7 -3.37796 | gap 1, opp_overlap 122218 122233, overlap 122218 122231 CCCGATGAGTGAGAA CTCGGCGCCAACGACACCGATCCA CACC TGGATCGGTGTCGTCACCA-CGAT TCTCGCCCCGACCAC TERM 37 122266 - 122218 - g 73 -16.2 -2.62463 | gap 1, opp_overlap 122218 122233, overlap 122217 122231 CCGATGAGTGAGAAC TCGGCGCCAACGACACCGATCCA CACC TGGATCGGTGTCGTCACCA-CGA TTCTCGCCCCGACCA TERM 38 122254 - 122231 - g 70 -15.4 -2.71011 | opp_overlap 122218 122233, overlap 122218 122217 ACTCGGCGCCAACGA CACCGATCCA CACC TGGATCGGTG TCGTCACCACGATTC RHA1_ro08124 122074 - 123174 + | hypothetical protein TERM 39 123257 - 123224 - f 87 -14.5 -3.64703 | opp_overlap 123225, overlap 123225 GCCTTCGCATCCAAA GGGCACCCCGATCCG GTCA CGGGTCGAGGTGCCT TCCGTGTCATGCCGT TERM 40 123225 - 123256 + F 89 -18 -3.14468 | opp_overlap 123224 123225 CCTTCGCATCCAAAG GGCACCCCGATCCG GTCA CGGGTCGAGGTGCC TTCCGTGTCATGCCG TERM 41 123256 - 123225 - f 89 -18 -2.78679 | opp_overlap 123225, overlap 123224 CCTTCGCATCCAAAG GGCACCCCGATCCG GTCA CGGGTCGAGGTGCC TTCCGTGTCATGCCG RHA1_ro08125 123393 - 124472 + | hypothetical protein TERM 42 124875 - 124891 + F 77 -12.3 -3.57462 | CCGATGCGTATCTGA GCCGTAC CTG GTACGGC TTTCGAGGTAGACTG RHA1_ro08126 124938 - 125153 + | hypothetical protein RHA1_ro08127 125150 - 125503 + | hypothetical protein RHA1_ro08128 125507 - 125836 + | hypothetical protein RHA1_ro08129 125855 - 127384 + | hypothetical protein RHA1_ro08130 127398 - 128657 + | hypothetical protein RHA1_ro08131 129904 - 128738 - | lipase RHA1_ro08132 131153 - 130137 - | secreted lipase TERM 43 131106 - 131096 - G 70 -8.2 -3.90744 | overlap 131097 CCGGCGCCCAAAGAA GGCC CGC GGCC AACCCGACACCCGCG RHA1_ro08133 131521 - 131880 + | hypothetical protein TERM 44 131961 - 131948 - T 74 -2.4 -4.75372 | ATGAGCGACGAAAAA CGTT GAGGTG AACG GCAAGGGAGGACGGA TERM 45 132083 - 132071 - T 73 -9.1 -3.86995 | overlap 132080 GGAAACCGACAACAA CAGCG AAA CGCTG ATGGCGCACCTCCAA RHA1_ro08134 132621 - 132154 - | hypothetical protein RHA1_ro08135 132717 - 133394 + | TetR family transcriptional regulator RHA1_ro08136 133593 - 133985 + | hypothetical protein RHA1_ro08137 135652 - 134006 - | cyclohexanone monooxygenase RHA1_ro08138 136949 - 135804 - | long-chain-acyl-CoA dehydrogenase fadD 140578 - 138950 - | medium-chain-fatty-acid--CoA ligase RHA1_ro08142 140780 - 141679 + | 5-valerolactone hydrolase RHA1_ro08143 141682 - 142656 + | 2-nitropropane dioxygenase TERM 46 143041 - 143019 - g 73 -12 -3.53224 | CACGCCTGCCGGAAA CCGGTGATCG CCG CGATCAACGG TGCGGCCGTCGGGAT RHA1_ro08144 142677 - 143561 + | enoyl-CoA hydratase RHA1_ro08145 144001 - 144381 + | hypothetical protein RHA1_ro08146 144435 - 144650 + | hypothetical protein RHA1_ro08147 145165 - 144674 - | transposase, C-terminal RHA1_ro08148 145598 - 145155 - | transposase RHA1_ro08149 145597 - 146334 + | transport protein RHA1_ro08150 146979 - 146380 - | hypothetical protein RHA1_ro08151 149163 - 147688 - | aldehyde dehydrogenase TERM 47 148325 - 148271 - G 100 -20 -3.99315 | opp_overlap 148286 148316 148317, overlap 148310 AGCAGACGGAAAGAA TCGTCCGCGACCGCAGTTCGGACGAG CCA CTCGATCGAACTCTGGTCGGGGACGA ACAGAATCCCCGGTT TERM 48 150385 - 150361 - g 72 -14.3 -3.20348 | overlap 150364 CGCATCAAGACCGAA GAAGTCCTGCG CCG CGCCGGACTTC CCGAAGATGTCGCCG TERM 49 150382 - 150364 - g 71 -10.2 -3.73872 | overlap 150361 ATCAAGACCGAAGAA GTCCTGCG CCG CGCCGGAC TTCCCGAAGATGTCG RHA1_ro08152 149326 - 150462 + | fatty acid-CoA racemase RHA1_ro08153 150512 - 151630 + | acyl-CoA dehydrogenase RHA1_ro08154 151637 - 152833 + | dehydratase/racemase RHA1_ro08155 152830 - 153984 + | alcohol dehydrogenase RHA1_ro08156 153981 - 155105 + | unsaturated glucuronyl hydrolase TERM 50 155986 - 156005 + G 71 -10.6 -3.73775 | CAGTCGTTCGCGCTT CGGACCGG TATC CCGGCCCG TTTCGTACCGCTGAC RHA1_ro08157 155116 - 156345 + | sensor kinase, two-component system RHA1_ro08158 156342 - 156980 + | response regulator, two-component system RHA1_ro08159 157028 - 158422 + | major facilitator transporter RHA1_ro08160 158605 - 158964 + | chaperone protein DnaK padC1 159839 - 159108 - | 3,4-dihydroxyphthalate decarboxylase padAd1 161077 - 159836 - | phthalate 3,4-dioxygenase ferredoxin reductase subunit padAc1 161271 - 161077 - | phthalate 3,4-dioxygenase ferredoxin subunit padB1 162115 - 161309 - | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase RHA1_ro08165 162423 - 162112 - | hypothetical protein padAb1 163046 - 162420 - | 3-phenylpropionate dioxygenase subunit beta padAa1 164506 - 163043 - | phthalate 3,4-dioxygenase alpha subunit TERM 51 164932 - 164943 + G 78 -5.8 -4.57569 | overlap 164920 164920 CAGCGCTGACGGGGG TCGC GTTT GCGA TTTTTGCCAGGCTCG padR1 164664 - 165470 + | IclR family transcriptional regulator RHA1_ro08169 166183 - 165518 - | phthalate ester hydrolase (isochorismatase hydrolase) RHA1_ro08170 167074 - 166259 - | ABC transporter, permease component RHA1_ro08171 167880 - 167071 - | taurine ABC transporter permease RHA1_ro08172 168689 - 167877 - | taurine ABC transporter ATP-binding protein RHA1_ro08173 169690 - 168704 - | ABC transporter substrate-binding protein RHA1_ro08174 170092 - 169850 - | hypothetical protein tpaR 171143 - 170337 - | IclR family transcriptional regulator tpaAa 171236 - 172501 + | aromatic ring dioxygenase alpha subunit tpaAb 172498 - 172968 + | aromatic ring dioxygenase, beta subunit tpaC 172965 - 173981 + | 4-hydroxythreonine-4-phosphate dehydrogenase tpaB1 173978 - 174988 + | ferredoxin--NAD(+) reductase TERM 52 175957 - 175978 + G 70 -8.7 -3.85698 | gap 1, overlap 175962 CACCACCCTCACGAC TGTCGGCGGC ATC GCCGCTG-CA TTTGTCACCGGGCCC tpaK 175046 - 176425 + | aromatic acid transporter TERM 53 176913 - 176938 + G 75 -5.4 -4.65078 | gap 1, opp_overlap 176911, overlap 176914 CAGGCCTGAAAATGG GGTCGG-GTCG CCCGC CGACGCCGACG TTTTCTTGGGAGTGT RHA1_ro08181 176909 - 177448 + | hypothetical protein RHA1_ro08182 177448 - 177756 + | hypothetical protein RHA1_ro08183 177861 - 178730 + | transposase RHA1_ro08184 180029 - 178938 - | transposase RHA1_ro08185 180238 - 181878 + | monooxygenase RHA1_ro08186 181916 - 182977 + | hypothetical protein RHA1_ro08187 183094 - 183405 + | hypothetical protein TERM 54 183414 - 183459 + F 93 -19.1 -3.07816 | gap 1 CGCCTGACCTGAGGC CGCGCACATCCCGGACCGTG AACGCCC CGCGGTCCGGGATGCGC-CG TTCGGTGGCTCCGCC RHA1_ro08188 183576 - 183878 + | acetate--CoA ligase, C-terminal RHA1_ro08189 184077 - 184427 + | acetate--CoA ligase RHA1_ro08190 184578 - 186338 + | transcriptional regulator RHA1_ro08191 186546 - 186830 + | hypothetical protein RHA1_ro08192 188142 - 186925 - | hypothetical protein TERM 55 188181 - 188196 + H 70 -2.5 -4.60041 | gap 1, opp_overlap 188179, overlap 188181 188182 TTCGTCGTAGATACT G-CGGC GCGGG GCCGGC TTTTTCGCGCTGAGT RHA1_ro08193 188452 - 189909 + | acid-CoA ligase TERM 56 189984 - 190009 + F 77 -8.3 -4.24342 | overlap 189990 CTTCTTTTCTCATAT CGACAGTCGAC GATC GTCGATTTTCG TTTCTTCGTGCCCAA TERM 57 189990 - 190003 + F 82 -6.7 -4.68846 | overlap 189984 TTCTCATATCGACAG TCGAC GATC GTCGA TTTTCGTTTCTTCGT RHA1_ro08194 190056 - 191921 + | transmembrane protein RHA1_ro08195 191926 - 193341 + | dehydrogenase RHA1_ro08197 195526 - 194510 - | transposase RHA1_ro08196 193338 - 194672 + | hypothetical protein RHA1_ro08198 195890 - 196534 + | hypothetical protein RHA1_ro08199 196983 - 197441 + | hypothetical protein TERM 58 197766 - 197747 - f 73 -9.2 -3.83998 | TCACCCCAGACGAAA CGGGGCAC GCAC GTGCCTCG GTGTGCAGATTGCCC RHA1_ro08200 198068 - 198643 + | tellerium resistance protein RHA1_ro08201 198743 - 199912 + | integral membrane protein RHA1_ro08202 200068 - 201255 + | tellurium resistance protein RHA1_ro08203 201932 - 201216 - | hypothetical protein RHA1_ro08204 203103 - 202066 - | ABC ribose transporter, permease component TERM 59 202537 - 202515 - G 74 -15.6 -3.08464 | GCAGGAGGGAGGGAA CGGGTCCGAA GTC TCCGGACCCG AACAGATTGGTGAAG RHA1_ro08205 204636 - 203110 - | ABC sugar transporter, ATP-binding component RHA1_ro08206 205853 - 204633 - | ABC sugar transporter, substrate-binding component TERM 60 206108 - 206072 - R 80 -15.8 -2.89564 | opp_overlap 206072 206074 GGGCTACCTGATACA GCCTGGGCCGCCGAGC TTTTC GCTCGACGGCCCATGG GAAGTGCAGCGCCGG RHA1_ro08207 207576 - 206128 - | betaine-aldehyde dehydrogenase TERM 61 206511 - 206559 + g 72 -13.8 -3.18796 | gap 2 ACCCTTCCAAGCCGC TGGGCCTGGCGCCTCCGGTGGCGA TGG TCGC-ACCGCCGGCGAC-GGCCCG TTCGATGTAGTTTTC RHA1_ro08208 207871 - 209037 + | ROK family transcriptional regulator RHA1_ro08209 209658 - 209275 - | hypothetical protein limC1 210696 - 209884 - | (+)-trans-carveol dehydrogenase RHA1_ro08211 212189 - 210849 - | major facilitator transporter RHA1_ro08212 213219 - 212200 - | NADH-dependent oxidoreductase RHA1_ro08213 214471 - 213212 - | hypothetical protein RHA1_ro08214 215293 - 214484 - | 3-oxo-acyl-(acyl-carrier-protein) reductase RHA1_ro08215 216186 - 215350 - | hypothetical protein RHA1_ro08216 216352 - 216759 + | hypothetical protein TERM 62 216760 - 216746 - f 71 -7.8 -4.16016 | overlap 216750 CGATGCGGCAACAAA CCCACC TCA GGTGAG ATACAACAGCCAACG RHA1_ro08217 217099 - 217806 + | hypothetical protein RHA1_ro08218 218110 - 217808 - | hypothetical protein RHA1_ro08219 219328 - 218414 - | hypothetical protein RHA1_ro08220 220290 - 219325 - | hypothetical protein RHA1_ro08221 220441 - 220707 + | hypothetical protein RHA1_ro08222 221031 - 221537 + | hypothetical protein RHA1_ro08223 221594 - 222523 + | hypothetical protein RHA1_ro08224 222824 - 222501 - | hypothetical protein RHA1_ro08225 223207 - 222923 - | hypothetical protein RHA1_ro08226 223314 - 223625 + | phosphoadenosine phosphosulfate reductase RHA1_ro08227 223686 - 224099 + | hypothetical protein RHA1_ro08228 224520 - 224254 - | hypothetical protein RHA1_ro08229 224696 - 225202 + | hypothetical protein RHA1_ro08230 225484 - 225206 - | hypothetical protein TERM 63 225517 - 225467 - G 72 -8.9 -4.07568 | gap 1, opp_overlap 225482 225486 TTCGCGGTGTGAAAA TG-CCGTCACCGCCGACATCCCGC ATCG GCCCGACGCAGACGGCGACGGGCA AGCGGTATGTATTCC TERM 64 225580 - 225609 + r 73 -9.3 -3.85698 | gap 1, overlap 225606 GTGATGAGGAGGCGG CTACTCGCGCTCGT CGA GC-AGCGCGAGCAG TTTCTCCAGGGGGAC RHA1_ro08231 225954 - 225580 - | hypothetical protein TERM 65 225929 - 225893 - G 80 -17.2 -2.93435 | gap 1 GGAACCATGTACACA CCGGCGACCGGGGCGCC GCGT GGCGCGGCGG-CGCCGG GCGGACACCGCGGAG RHA1_ro08232 226030 - 226470 + | hypothetical protein RHA1_ro08233 226768 - 227355 + | hypothetical protein RHA1_ro08234 227606 - 228703 + | hypothetical protein RHA1_ro08235 230231 - 228942 - | hypothetical protein RHA1_ro08236 230532 - 231032 + | hypothetical protein RHA1_ro08237 231161 - 231475 + | hypothetical protein RHA1_ro08238 232008 - 231466 - | hypothetical protein RHA1_ro08239 232822 - 233154 + | WhiB family transcriptional regulator RHA1_ro08240 233174 - 233464 + | hypothetical protein RHA1_ro08242 233965 - 233747 - | transposase RHA1_ro08243 234672 - 233968 - | major facilitator transporter TERM 66 234008 - 234046 + g 86 -13.3 -3.85698 | gap 1, opp_overlap 233999 233998 CGAAATCTCGTCCAC CCCGATCTCGACCAGATT CGTG AATC-GGTCGAGGTCGAG TTTGTCGGCGACGAC RHA1_ro08244 236386 - 234839 - | major facilitator superfamily multidrug resistance protein TERM 67 237091 - 237035 - H 89 -15.1 -3.75766 | overlap 237038 CTTAGAATCGAAGAA TGAGGGCTCCTGGTTGGGTCGGTGA GTACATG TCCCCGACTACACCAGGAGCCCACA ATGACATCATCGCCG TERM 68 237088 - 237038 - H 81 -15.4 -2.96731 | overlap 237035 AGAATCGAAGAATGA GGGCTCCTGGTTGGGTCGGTGA GTACATG TCCCCGACTACACCAGGAGCCC ACAATGACATCATCG TERM 69 237122 - 237153 + H 85 -16.6 -3.11634 | ATACCGCCATGCCGG TCGTGCCCGCCC CACGCGGC GGGCGGGCACGG TTGCGTGGTGTACCC RHA1_ro08245 237270 - 237830 + | hypothetical protein RHA1_ro08246 237891 - 238178 + | hypothetical protein RHA1_ro08247 238579 - 238202 - | serine recombinase RHA1_ro08248 238615 - 239055 + | hypothetical protein TERM 70 239154 - 239144 - f 70 -2.4 -4.66537 | TCGGCCAAGAGAAAA GCCG ACT CGCC CCATCACGGACTAGC RHA1_ro08249 239390 - 239941 + | hypothetical protein RHA1_ro08250 240267 - 239953 - | hypothetical protein RHA1_ro08251 240558 - 241079 + | starvation-response DNA binding protein TERM 71 241144 - 241102 - f 70 -6.1 -4.26344 | gap 1, overlap 241104 241105 241107 AGACGGTGAGCAAAA GAGGAGGCGGCC-GCGCCGA ACGA TCGGCACCGGCGGTCTCGGC CATCAATGCCATAAC TERM 72 241325 - 241383 + F 100 -25.5 -2.82516 | gap 1, opp_overlap 241327 GCCGAGAATCGAAGA AAGTGGGCTCCTGGCTGGGTCGGTGATC ACCA GATCACCGACCCAA-CAGGAGCCCACAA TCTCATCATCGCCGA TERM 73 241381 - 241327 - f 100 -34.7 -4.27467 | gap 1, opp_overlap 241325 CGAGAATCGAAGAAA GTGGGCTCCTGGCTGGGTCGGTGATC ACCA GATCACCGACCCAA-CAGGAGCCCAC AATCTCATCATCGCC RHA1_ro08252 241549 - 241797 + | hypothetical protein RHA1_ro08253 242789 - 241932 - | transcription factor WhiB TERM 74 242610 - 242568 - G 79 -14.9 -3.28712 | gap 2 GCTGCTCGGCCAGAA CTGCAG-CCGCGG-CGGACAG CAA CTGTGCGTCCGCGGCCTGCGG CGAAGGCCCTCGTCC RHA1_ro08254 243313 - 243789 + | hypothetical protein TERM 75 244471 - 244438 - g 95 -18.1 -3.69395 | CTCACCAGCGAACAA CGTGCCCGCCGCCGC GCGA ACGGCGACGGGCAGG CGAAACTGTAGCTCG RHA1_ro08255 244277 - 244555 + | hypothetical protein RHA1_ro08256 245235 - 244858 - | serine recombinase RHA1_ro08257 245779 - 245468 - | hypothetical protein TERM 76 245969 - 246006 + H 86 -14.9 -3.53761 | gap 1 ACTTCCGGCCTCTGA CACGCCCGTCCCGGCC CCTCCAC GGCCGGGACGA-CGTG TTTCCCAAAGAGTTC RHA1_ro08258 246112 - 247800 + | hypothetical protein TERM 77 248624 - 248606 - g 73 -8.1 -4.18494 | gap 1, overlap 248607 CACCTGCACCGAAAA CTCCGGCC CGCT GGCCGG-G CAACGCGAGTGTGAG RHA1_ro08259 248295 - 248657 + | aconitate hydratase RHA1_ro08260 249256 - 248711 - | forkhead domain-containing protein TERM 78 249867 - 249915 + G 82 -15.9 -3.30441 | gap 1, overlap 249868 TCGCTACCTGGCGGA GCGGCCGGCCCCGTC-GCAGCG GGTGGA CGCCGCCGACGGGGTCCGCCGG TTGTCGACGGTGCTG TERM 79 249868 - 249914 + G 79 -19.4 -2.5805 | gap 1, overlap 249867 CGCTACCTGGCGGAG CGGCCGGCCCCGTC-GCAGCG GGTGGA CGCCGCCGACGGGGTCCGCCG GTTGTCGACGGTGCT RHA1_ro08261 249484 - 250167 + | MarR family transcriptional regulator TERM 80 251994 - 251974 - g 70 -8.2 -3.85698 | overlap 251960 GGCCTCGGCGACAAA GTCGCGCA GGGGG TGCGCGCC AAAAAGGATGAACTC RHA1_ro08262 250549 - 252069 + | catalase RHA1_ro08263 252355 - 252636 + | hypothetical protein RHA1_ro08264 253298 - 252879 - | hypothetical protein RHA1_ro08265 253630 - 253989 + | carboxymuconolactone decarboxylase acnA3 253986 - 256784 + | aconitate hydratase TERM 81 257034 - 257016 - T 74 -14.6 -2.57132 | opp_overlap 257015, overlap 257015 CTGGCGGTGCAGAAC TCGTGCGG CTA CCGCACGA CTGCCTTGCGGTTGA RHA1_ro08267 257137 - 257024 - | succinate dehydrogenase RHA1_ro08268 257817 - 257320 - | succinate dehydrogenase Fe-S protein RHA1_ro08269 258024 - 258617 + | hypothetical protein RHA1_ro08270 259856 - 258960 - | membrane protease, stomatin/prohibitin-like protein RHA1_ro08271 260429 - 260025 - | hypothetical protein TERM 82 260254 - 260240 - G 72 -9.2 -4.07568 | overlap 260241 CGGCGTCGTTGAAAA CGCGGG GCC CCCGCA GTGCAAACATGCCGA RHA1_ro08272 261036 - 260413 - | hypothetical protein RHA1_ro08273 261176 - 261676 + | hypothetical protein RHA1_ro08274 261712 - 262152 + | MarR family transcriptional regulator RHA1_ro08275 263982 - 262402 - | glutamate synthase (ferredoxin) RHA1_ro08276 265441 - 264185 - | ferredoxin reductase RHA1_ro08277 266719 - 265577 - | transaldolase RHA1_ro08278 267564 - 266794 - | hypothetical protein TERM 83 266904 - 266878 - G 70 -14.5 -2.70932 | gap 1, opp_overlap 266874 CCCGGCGGTGAACCA CGCCGCGAATCC CTGC GGAT-CGCGGCG CTCGATCTCGTCGAG RHA1_ro08279 268470 - 267760 - | transcriptional regulator RHA1_ro08280 268562 - 269044 + | hypothetical protein RHA1_ro08281 269172 - 269768 + | GTP cyclohydrolase I RHA1_ro08282 270447 - 269911 - | hypothetical protein RHA1_ro08283 271215 - 270526 - | ArsR family transcriptional regulator RHA1_ro08284 271276 - 271662 + | ferredoxin RHA1_ro08285 271659 - 273407 + | cytochrome-c oxidase RHA1_ro08286 273588 - 274034 + | hypothetical protein RHA1_ro08287 274022 - 274861 + | hypothetical protein RHA1_ro08288 274858 - 275502 + | glutathione transferase RHA1_ro08289 276606 - 275833 - | transcriptional regulator TERM 84 276379 - 276397 + g 85 -17.4 -3.15544 | opp_overlap 276367 ATAGCCGGTACGGGG CCGGCCGG CGC CCGGCCGG TTCATCCGGGTGCGC TERM 85 276922 - 276908 - g 71 -11.4 -3.58522 | AGCATCATGGCCAAA GCGCAG CGT CTGCGC TGCCCGCTCACGGCC TERM 86 277483 - 277429 - g 71 -11.4 -3.53761 | gap 1, opp_overlap 277446, overlap 277437 GAACCGTGCCGGAAA CCACACAACGCGACCGCCGGGCCTC TCGTTC GATACCCGCCGGCAG-GTCGTGTGG ATGTCTGCCGAACCA RHA1_ro08290 276686 - 277546 + | ppGpp synthetase RHA1_ro08291 277635 - 278216 + | hypothetical protein RHA1_ro08292 278281 - 278553 + | hypothetical protein RHA1_ro08293 278898 - 279380 + | hypothetical protein RHA1_ro08294 279672 - 279496 - | transposase RHA1_ro08295 280183 - 279689 - | MarR family transcriptional regulator RHA1_ro08296 280381 - 280998 + | carbonate dehydratase RHA1_ro08297 280982 - 281476 + | hypothetical protein TERM 87 281905 - 281891 - gT 100 -11.4 -4.74917 | overlap 281884 ACGAAACAGAGAAAA CTCCCG GAA CGGGAG GCGGACGAAGACCGT RHA1_ro08299 283385 - 282201 - | IS30 family transposase RHA1_ro08298 281670 - 282284 + | transposase mutator family protein RHA1_ro08300 283443 - 283610 + | transposase RHA1_ro08301 284247 - 284777 + | integrase/recombinase RHA1_ro08302 284780 - 285097 + | hypothetical protein RHA1_ro08303 285100 - 286710 + | hypothetical protein TERM 88 286727 - 286754 + F 84 -14.2 -3.56099 | overlap 286728 AGTTCAGGCGCCACC TCGCACACGTTC GCGC GAACGTGTGCGC TTTGGCCAAGTTCTG TERM 89 286728 - 286753 + F 84 -17.7 -2.73338 | overlap 286727 GTTCAGGCGCCACCT CGCACACGTTC GCGC GAACGTGTGCG CTTTGGCCAAGTTCT RHA1_ro08304 286747 - 287358 + | transposase TERM 90 287533 - 287502 - T 100 -16.6 -5.02323 | opp_overlap 287499 TGAGGATAAAGAAAA CCAGCCTCCCCCTC GAAT GAGTGGAAGGCTGG CCGTGTTGGCGTCAA RHA1_ro08305 287876 - 287484 - | hypothetical protein RHA1_ro08306 287996 - 288259 + | hypothetical protein RHA1_ro08307 290305 - 288698 - | glutamate synthase (ferredoxin) RHA1_ro08308 290602 - 291108 + | MarR family transcriptional regulator RHA1_ro08309 291457 - 291080 - | hypothetical protein RHA1_ro08310 292476 - 291454 - | short chain dehydrogenase RHA1_ro08311 294284 - 292524 - | glycosyl hydrolase TERM 91 293340 - 293360 + g 74 -12.5 -3.59979 | GTCCGGAACGCGGCC CCCGCCGAC GGT GTAGGCGGG TTTGAGGTCGGGGCC ilvB6 294640 - 296433 + | pyruvate decarboxylase RHA1_ro08313 296447 - 297550 + | mandalate racemase TERM 92 300397 - 300380 - g 71 -2.6 -4.56597 | TTCGGGTTCGAAAAA GGGCAC TACGAG GTGTCC GTCGCCTGCGCCGAA RHA1_ro08314 297623 - 300694 + | D-lactate dehydrogenase (cytochrome) RHA1_ro08315 300718 - 302277 + | dehydrogenase RHA1_ro08316 302342 - 302839 + | hypothetical protein RHA1_ro08317 303810 - 303034 - | integral membrane protein RHA1_ro08318 304295 - 303858 - | hypothetical protein RHA1_ro08319 304589 - 304975 + | hypothetical protein RHA1_ro08320 304997 - 306079 + | transposase RHA1_ro08321 306167 - 306496 + | hypothetical protein RHA1_ro08322 307269 - 306838 - | hypothetical protein RHA1_ro08323 308800 - 307331 - | amino acid decarboxylase TERM 93 308499 - 308478 - G 76 -7.9 -4.29106 | overlap 308479 CGGGAGACCAACAAA CCGCCGGGA TCGT TTCCGGCGA CGGCCAGCATCGCCG RHA1_ro08324 309060 - 310136 + | 6-aminopenicillanic-acid-acyltransferase TERM 94 310342 - 310359 + T 89 -12.7 -4.07885 | TGGGGGCCGCTCTCC GAGGCGC ATCG GCGCCTC TTTTCGGGCAGGGTG RHA1_ro08325 310987 - 310379 - | hypothetical protein RHA1_ro08326 311128 - 312291 + | phospholipase RHA1_ro08327 312748 - 312380 - | transposase RHA1_ro08328 313573 - 312776 - | transposase RHA1_ro08329 313836 - 314285 + | hypothetical protein RHA1_ro08330 314318 - 314641 + | hypothetical protein RHA1_ro08331 315100 - 314657 - | hypothetical protein RHA1_ro08332 315880 - 315425 - | hypothetical protein TERM 95 315920 - 315964 + H 80 -13.6 -3.35679 | gap 1 CGAGCGGTGTACCCG GTGTCCCGCCGGCAGCG TCAGTCGTGTTT CGC-GCCGGCGGGACCC TTCTCCCTAACCGGA RHA1_ro08333 316063 - 316710 + | phosphate transport system protein PhoU RHA1_ro08334 316716 - 317363 + | hypothetical protein RHA1_ro08335 317904 - 317368 - | hypothetical protein RHA1_ro08336 318205 - 318885 + | TetR family transcriptional regulator RHA1_ro08337 318906 - 319376 + | hypothetical protein lppS 319627 - 320928 + | ErfK/YbiS/YcfS/YnhG family lipoprotein RHA1_ro08339 321152 - 321685 + | hypothetical protein RHA1_ro08340 322484 - 321834 - | transmembrane protein RHA1_ro08341 323312 - 322533 - | transcriptional regulator TERM 96 323165 - 323218 + g 70 -15.3 -2.78384 | gap 2 CGGGCACCGCGGTGG CCGCCGTGCGGGCCAGCCGCCCGAG CACCTC CTCGAGCGGCT--CCTGCGCGGGGG TCTCGTCCCGCAGCA TERM 97 323327 - 323361 + r 81 -16.4 -2.73468 | gap 1 TCTCGCACCCCTTTC CG-CGGCCCGGCCGG TGCCGT CCGGCGGGGCCGGCG TGGTTACAGCTATTC RHA1_ro08342 323685 - 323371 - | hypothetical protein RHA1_ro08343 324649 - 324182 - | hypothetical protein TERM 98 324692 - 324741 + H 78 -14.3 -3.28924 | gap 1 GCAGTGCCGCCGACC CAGGACGCGGCAGACGGGAATGCC TCA GGGAGTTTCGTCT-CCGCGTCCGG TTGTCCCGCCGCGTC RHA1_ro08344 326217 - 327185 + | hypothetical protein dnaJ4 327640 - 327188 - | chaperone protein TERM 99 327708 - 327677 - R 81 -10.9 -3.96148 | CGGGTGCACGAGAAA GGTGGTCCCGG GCTCGGGATG CCGGAACCACC AAGGCGGGGCGGGCC RHA1_ro08346 328008 - 327760 - | hypothetical protein RHA1_ro08347 328366 - 328022 - | hypothetical protein RHA1_ro08348 328848 - 328399 - | heat shock protein (18 kDa antigen-like protein) RHA1_ro08349 328951 - 329448 + | MerR family transcriptional regulator TERM 100 330016 - 330056 + F 100 -22.6 -3.53444 | GGCCTCGACCGATGC CGTGGTGTGCGCGGCGTC GAGGG GTCGCCTCGCACACCACG TTTCGACCCAAGTCG RHA1_ro08350 330123 - 330482 + | WhiB family transcriptional regulator TERM 101 330706 - 330725 + F 71 -10 -3.66178 | gap 1, opp_overlap 330697 AAGTCAGGAGCGGCA GCGG-ACCG GTA CGGTGCCGC TTTCAGGTTCCGCGG RHA1_ro08351 330876 - 331496 + | hypothetical protein RHA1_ro08352 331847 - 331545 - | hypothetical protein RHA1_ro08353 332594 - 332304 - | hypothetical protein TERM 102 333976 - 333992 + G 72 -13.7 -3.16564 | AGCTGTTCTTCACCG CCGGCTC GGT GAGCCGG TTCATCGAGTCCGGC RHA1_ro08354 332976 - 334586 + | UDP-galactose-4-epimerase RHA1_ro08355 334607 - 335323 + | hypothetical protein RHA1_ro08356 335355 - 336176 + | hypothetical protein RHA1_ro08357 336547 - 336203 - | hypothetical protein RHA1_ro08358 336669 - 337151 + | hypothetical protein RHA1_ro08359 337294 - 337749 + | hypothetical protein RHA1_ro08360 338245 - 337820 - | hypothetical protein hspA 338976 - 338539 - | small heat shock protein TERM 103 339286 - 339246 - R 80 -14.6 -3.16668 | opp_overlap 339256 339268, overlap 339236 339248 GAACAGGCCGAGGAA GACCCGCTGCCGCCTGCA CACAC CGCCGGCGTCAGCGGGTG TCGGTGCCGACCGCG TERM 104 339284 - 339248 - R 88 -17.2 -3.14229 | opp_overlap 339256 339268, overlap 339236 339246 ACAGGCCGAGGAAGA CCCGCTGCCGCCTGCA CACAC CGCCGGCGTCAGCGGG TGTCGGTGCCGACCG RHA1_ro08362 339783 - 339277 - | hypothetical protein TERM 105 339705 - 339671 - G 95 -19.2 -3.62096 | opp_overlap 339696, overlap 339672 TGGCAGCACCGCAAA TCCCGGGCGAGCGCCC CCA GGGCGCCCGCCCAAGC CTGGGGCGCACCGGG TERM 106 339704 - 339672 - G 87 -22.7 -2.77043 | opp_overlap 339696, overlap 339671 GGCAGCACCGCAAAT CCCGGGCGAGCGCCC CCA GGGCGCCCGCCCAAG CCTGGGGCGCACCGG TERM 107 339696 - 339729 + g 85 -17.4 -3.14132 | opp_overlap 339672 339671 GCGCCCCCAGGGCGC CCGCCCAAGCCTGG GGCGCA CCGGGCCTGGGCGG TTCCTCGAACACCGG RHA1_ro08363 340032 - 339826 - | hypothetical protein RHA1_ro08364 340535 - 341743 + | hydrolase dnaK4 341918 - 343801 + | molecular chaperone DnaK TERM 108 344151 - 344194 + G 70 -12.4 -3.29144 | gap 1, opp_overlap 344160 344167 GGACCGGGCCGCGGT CGCCGA-GAACGCGAAAGCGA CGG TCGCCACCGCGTTCCTCGGTG TTCTCGACGACCTGG grpE4 343798 - 344748 + | heat shock protein GrpE TERM 109 344957 - 344935 - g 70 -9 -3.86202 | GCGGAGGACATCAAA CGGGCCTACC GCA AGCTGGCCCG GCAACTGCACCCGGA dnaJ5 344854 - 346041 + | chaperone protein RHA1_ro08368 347028 - 346138 - | hypothetical protein RHA1_ro08369 347341 - 348246 + | hypothetical protein TERM 110 348497 - 348521 + G 81 -18.5 -2.72661 | GTTGGAACTGCTCAC CGGCCGCCGCG GTC CGCAGCGGCCG TCGTTCAACCTGGTG RHA1_ro08370 348252 - 348773 + | hypothetical protein TERM 111 348916 - 348956 + F 89 -18.2 -2.87132 | gap 1, opp_overlap 348901 TGCGCCCGGCCGGGC GGCTGCGG-GCCGGCGCGG TAAT CGGCGCCGTCGCCGCGGCC TGTGTGACCGGCCCG RHA1_ro08371 349517 - 349858 + | hypothetical protein TERM 112 350322 - 350283 - T 86 -12.8 -3.85698 | CCCCGTCTGCAGAAA GCCCGGCCTCGCTGGT CGCCCATT ACCACCGCGGCCGGAC GAACGAGGACTGCAG RHA1_ro08372 350778 - 350386 - | hypothetical protein RHA1_ro08373 351658 - 351104 - | hypothetical protein RHA1_ro08374 351635 - 351925 + | hypothetical protein RHA1_ro08376 353614 - 352979 - | hypothetical protein RHA1_ro08375 352354 - 353031 + | hypothetical protein RHA1_ro08377 353602 - 353859 + | hypothetical protein RHA1_ro08378 354134 - 355291 + | carboxylate-amine ligase RHA1_ro08379 355601 - 355308 - | hypothetical protein RHA1_ro08380 355661 - 355852 + | pyruvate dehydrogenase RHA1_ro08381 357127 - 355886 - | hypothetical protein RHA1_ro08382 357979 - 357335 - | TetR family transcriptional regulator RHA1_ro08383 358042 - 358467 + | hypothetical protein RHA1_ro08384 358464 - 359345 + | nucleoside diphosphate sugar epimerase RHA1_ro08385 359670 - 359335 - | hypothetical protein RHA1_ro08386 362251 - 359891 - | hypothetical protein RHA1_ro08387 362807 - 362508 - | growth inhibitor PemK RHA1_ro08388 363031 - 362807 - | hypothetical protein RHA1_ro08389 363968 - 363015 - | transposase RHA1_ro08390 364926 - 364036 - | methyltransferase RHA1_ro08391 365894 - 365652 - | hypothetical protein RHA1_ro08392 366020 - 366880 + | acyltransferase RHA1_ro08393 367866 - 366877 - | transposase TERM 113 368005 - 368048 + r 93 -18.9 -3.14564 | gap 1, opp_overlap 368000 TCTGTCAAGAGGGCA GAGT-GAGGCGCCTCCGGGG AGCGA CCCTGGAGGCGCCTCTGCAC TTCATCGACAGGTCC RHA1_ro08394 369360 - 368269 - | transposase RHA1_ro08395 369522 - 369998 + | hypothetical protein RHA1_ro08396 370044 - 370781 + | hypothetical protein RHA1_ro08397 371865 - 371335 - | ester cyclase TERM 114 371653 - 371598 - G 72 -14 -3.14602 | gap 1, overlap 371596 GCCAGTGGAGCAAGA CGTCATCGCCGGACTCGGCGATCGAGA CGA TCTCGAAGGCGAAGTC-GGCGACGGCG TCGAAGACCTGGTTG RHA1_ro08398 372693 - 372118 - | hypothetical protein RHA1_ro08399 373330 - 372698 - | hypothetical protein RHA1_ro08400 373848 - 373504 - | hypothetical protein TERM 115 374204 - 374223 + H 71 -7.8 -4.08767 | CGGCGGCGGTGTCGG GCGCTGAC TCAG GTCGGTGC TTTTCGGCGACTCGC RHA1_ro08401 374852 - 375337 + | hypothetical protein RHA1_ro08402 375842 - 375600 - | hypothetical protein TERM 116 375955 - 375900 - H 70 -11.2 -3.32844 | gap 2 GCCTTCACGGTAGAA TCCGAGCCGCCGCGTCGCCGGAACCG GGAACG CGCTCCCGGTGACACGG-GA-TCGGA ACGAGTGAGCCATCA RHA1_ro08403 375979 - 376350 + | hypothetical protein RHA1_ro08404 376355 - 376729 + | hypothetical protein RHA1_ro08405 376726 - 377037 + | hypothetical protein RHA1_ro08406 377906 - 377154 - | N-formylglutamate aminohydrolase RHA1_ro08407 378220 - 377906 - | transposase TERM 117 380252 - 380266 + G 74 -12.8 -3.62096 | CACCATCGGCCAGGC CCGGGG TAT CCCCGG TTTCACCTCGTAGGA RHA1_ro08408 378480 - 380279 + | hypothetical protein RHA1_ro08409 381463 - 382947 + | glycosyl hydrolase TERM 118 383462 - 383413 - g 72 -13.4 -3.21099 | overlap 383391 GCGGCCGACCAGGAA CG-CGCACTCCGGGCGGCCGCTGC CGCC GCCGCGGCGGCCCGCCG-GCGACG GCTCGCACACGACAC RHA1_ro08410 383050 - 384855 + | subtilisin-like serine protease TERM 119 385481 - 385516 + G 73 -10.3 -3.87373 | opp_overlap 385500 385503, overlap 385503 385509 385510 CTGCCGACCGGGCCC GGGGGCGCGGCCG GGAACACCAG CGGCGGCGCCGCC TTTCTCGGCGATCTG RHA1_ro08411 384869 - 386185 + | hypothetical protein TERM 120 386825 - 386810 - f 74 -10.4 -3.81447 | GACACCGGAGAACAA GCTCGG TGTT CCGAGC GCACCAACACAACCG TERM 121 387008 - 386958 - g 70 -12.7 -3.37796 | gap 1, opp_overlap 386959 386974, overlap 386959 386972 CCCGATGAGTGAGAA CTCGGCGCCAACGACACCGATCCA CACC TGGATCGGTGTCGTCACCA-CGAT TCTCGCCCCGACCAC TERM 122 387007 - 386959 - g 73 -16.2 -2.62463 | gap 1, opp_overlap 386959 386974, overlap 386958 386972 CCGATGAGTGAGAAC TCGGCGCCAACGACACCGATCCA CACC TGGATCGGTGTCGTCACCA-CGA TTCTCGCCCCGACCA TERM 123 386995 - 386972 - g 70 -15.4 -2.71011 | opp_overlap 386959 386974, overlap 386959 386958 ACTCGGCGCCAACGA CACCGATCCA CACC TGGATCGGTG TCGTCACCACGATTC RHA1_ro08412 386815 - 387909 + | hypothetical protein RHA1_ro08413 388129 - 388587 + | hypothetical protein RHA1_ro08414 389353 - 389030 - | hypothetical protein TERM 124 389691 - 389707 + H 77 -12.3 -3.57462 | CCGATGCGTATCTGA GCCGTAC CTG GTACGGC TTTCGAGGTAGACTG RHA1_ro08415 389754 - 389969 + | hypothetical protein RHA1_ro08416 389966 - 390319 + | hypothetical protein RHA1_ro08417 390665 - 392182 + | hypothetical protein RHA1_ro08418 392196 - 393455 + | hypothetical protein RHA1_ro08419 393997 - 393701 - | fatty-acid-CoA ligase TERM 125 394115 - 394105 - R 77 -4.6 -4.62203 | CCCAAACAACGAAAA CGAC AAC GCCG GAATATGGAGCCGAA RHA1_ro08420 394970 - 394623 - | hypothetical protein RHA1_ro08421 396330 - 395164 - | secretory lipase TERM 126 396146 - 396099 - G 74 -13.4 -3.31144 | overlap 396100 TGGTGACCGCCAGAA TCGGGTTGCCGGCCGAGTTC GTCGACCG GAACGCGACCTGCAACCCGT CGGAGTTGGCGTACA TERM 127 396145 - 396100 - G 73 -16.9 -2.58544 | overlap 396099 GGTGACCGCCAGAAT CGGGTTGCCGGCCGAGTTC GTCGACCG GAACGCGACCTGCAACCCG TCGGAGTTGGCGTAC RHA1_ro08422 397592 - 396579 - | lipase TERM 128 397545 - 397535 - G 70 -8.2 -3.90744 | overlap 397536 CCGGCGCCCAAAGAA GGCC CGC GGCC AACCCGACACCCGCG RHA1_ro08423 397960 - 398319 + | hypothetical protein TERM 129 398400 - 398387 - f 74 -2.4 -4.75372 | ATGAGCGACGAAAAA CGTT GAGGTG AACG GCAAGGGAGGACGGA TERM 130 398522 - 398510 - g 70 -9.1 -3.86995 | overlap 398519 GGAAACCGACAACAA CAGCG AAA CGCTG ATGGCGCACCTGCAC RHA1_ro08424 398394 - 398642 + | hypothetical protein RHA1_ro08425 399124 - 398729 - | hypothetical protein RHA1_ro08426 399183 - 399830 + | TetR family transcriptional regulator RHA1_ro08427 400208 - 400564 + | hypothetical protein RHA1_ro08428 401094 - 401408 + | hypothetical protein RHA1_ro08429 401477 - 401698 + | hypothetical protein RHA1_ro08430 401832 - 402284 + | hypothetical protein RHA1_ro08431 402382 - 402855 + | hypothetical protein RHA1_ro08432 403492 - 403851 + | hypothetical protein RHA1_ro08433 405750 - 404065 - | LuxR family transcriptional regulator RHA1_ro08435 407910 - 407161 - | LuxR family transcriptional regulator RHA1_ro08434 405931 - 407238 + | transposase mutator family protein RHA1_ro08436 408517 - 407897 - | hypothetical protein RHA1_ro08437 409696 - 408674 - | NADPH:quinone reductase TERM 131 409117 - 409129 + g 72 -3.3 -4.62872 | overlap 409114 GAGCGCCTGCGTTGC GGGCA AGC TGCGC TTTTTCCGCATTGCT RHA1_ro08438 411082 - 409811 - | acyl-CoA dehydrogenase RHA1_ro08439 412787 - 411189 - | CoA ligase RHA1_ro08440 413815 - 412784 - | monosaccharide-transporting ATPase RHA1_ro08441 415323 - 413812 - | monosaccharide-transporting ATPase RHA1_ro08442 416474 - 415347 - | sugar ABC transporter periplasmic protein TERM 132 417721 - 417695 - g 72 -13.7 -3.14931 | CGGATCCTCGACGAA CTCGGAGTCCC TCGCC GGGTCTCCGAG TTCGGGGTCGGACGC RHA1_ro08443 416672 - 417847 + | alcohol dehydrogenase TERM 133 417931 - 417887 - T 100 -41.7 -3.34962 | opp_overlap 417891, overlap 417891 GCTGACAGCCGATAA CGAAGGAGGAGGCCCCGGGCG ATC CGCCCGGGGCCTCCTCCTTCG TCACCGCAGGGAGCT TERM 134 417927 - 417891 - T 100 -35.3 -3.45386 | opp_overlap 417891, overlap 417887 ACAGCCGATAACGAA GGAGGAGGCCCCGGGCG ATC CGCCCGGGGCCTCCTCC TTCGTCACCGCAGGG TERM 135 417891 - 417927 + T 100 -35.3 -3.14132 | opp_overlap 417891 417887 ACAGCCGATAACGAA GGAGGAGGCCCCGGGCG ATC CGCCCGGGGCCTCCTCC TTCGTCACCGCAGGG RHA1_ro08444 418580 - 417960 - | TetR family transcriptional regulator RHA1_ro08445 419631 - 418654 - | NADPH:quinone reductase RHA1_ro08446 419764 - 420813 + | phosphotransferase RHA1_ro08447 420959 - 421837 + | dehydratase RHA1_ro08448 421921 - 422682 + | 3-oxoacyl-[acyl-carrier protein] reductase RHA1_ro08449 422802 - 423563 + | short chain dehydrogenase citA3 423786 - 424934 + | citrate synthase 2 RHA1_ro08451 425302 - 425724 + | hypothetical protein TERM 136 426102 - 426057 - f 100 -22.7 -5.0916 | opp_overlap 426062, overlap 426058 426059 CCCCGAACACAAAAA CGCCACCTACCCATCCCGTGC CGGG GCACGGGATGGGTAGGTGTTA CCGCTCTGGCACTAT TERM 137 426101 - 426058 - f 100 -24 -3.64773 | opp_overlap 426062, overlap 426057 426059 CCCGAACACAAAAAC GCCACCTACCCATCCCGTGC CGGG GCACGGGATGGGTAGGTGTT ACCGCTCTGGCACTA TERM 138 426100 - 426059 - f 100 -27.5 -2.78141 | opp_overlap 426062, overlap 426058 426057 CCGAACACAAAAACG CCACCTACCCATCCCGTGC CGGG GCACGGGATGGGTAGGTGT TACCGCTCTGGCACT TERM 139 426062 - 426097 + F 100 -27.8 -3.05343 | opp_overlap 426059 426058 426057 AACACAAAAACGCCA CCTACCCATCCCGTGC CGGG GCACGGGATGGGTAGG TGTTACCGCTCTGGC RHA1_ro08452 426126 - 426368 + | hypothetical protein RHA1_ro08453 426555 - 427007 + | hypothetical protein RHA1_ro08454 427379 - 427960 + | hypothetical protein RHA1_ro08455 428505 - 428044 - | hypothetical protein RHA1_ro08456 428869 - 428555 - | hypothetical protein RHA1_ro08457 429644 - 428898 - | hypothetical protein RHA1_ro08458 430763 - 429885 - | hypothetical protein RHA1_ro08460 431732 - 431304 - | hypothetical protein RHA1_ro08459 430792 - 431364 + | hypothetical protein RHA1_ro08461 431753 - 432370 + | hypothetical protein RHA1_ro08462 432503 - 433093 + | hypothetical protein RHA1_ro08463 433133 - 433426 + | hypothetical protein RHA1_ro08464 434702 - 433395 - | acetylornithine deacetylase TERM 140 434463 - 434477 + g 87 -5.6 -5.12971 | opp_overlap 434464, overlap 434464 GCCCTTCACGACACC AGCGAG GTT CTCGCG TTTTTCTTGGCTCTT RHA1_ro08465 436425 - 434827 - | AMP-binding enzyme TERM 141 436586 - 436615 + r 77 -12.1 -3.61398 | overlap 436587 GCGTCTCACCCGTGC CCTGACGCGTGGG GCTG TCCGCGCGTCAGA TTCTTCGACAAAGCG TERM 142 436587 - 436614 + r 78 -15.6 -2.76696 | overlap 436586 CGTCTCACCCGTGCC CTGACGCGTGGG GCTG TCCGCGCGTCAG ATTCTTCGACAAAGC gcvPb 438349 - 436793 - | glycine dehydrogenase subunit 2 TERM 143 437748 - 437796 + g 71 -10.4 -3.69323 | gap 2, opp_overlap 437749 437752, overlap 437749 TCGAGCATCAACGTA ATCA-CCTTG-AACCCCGCGGCGG CGG CTGTCGCGGCGTTGCAAGGGTGAG TTTGAATAGTCGTGA gcvPa 439748 - 438339 - | glycine dehydrogenase subunit 1 RHA1_ro08468 440939 - 439785 - | hypothetical protein RHA1_ro08469 441861 - 441055 - | 3-oxoacyl-[acyl-carrier protein] reductase RHA1_ro08470 442442 - 441846 - | hypothetical protein RHA1_ro08471 444012 - 442573 - | amino acid permease RHA1_ro08472 444335 - 444054 - | hypothetical protein TERM 144 445141 - 445169 + G 75 -10.2 -4.09864 | AGGTAATTTCAGCAC CGCGTACCGACG ACGCA CGTTGGCGCGCG TTTTGGACACTGCGT RHA1_ro08473 444555 - 445487 + | LysR family transcriptional regulator RHA1_ro08474 446289 - 445774 - | hypothetical protein eutP 447938 - 446451 - | ethanolamine permease tynA 449878 - 447941 - | tyramine oxidase TERM 145 449672 - 449711 + g 74 -12.3 -3.63569 | gap 3, overlap 449710 GATCAGCACGGCGCT GGC-CT-CGCGGCGAATCTG CGA CAGG-TCGCCGCGCAGTGCC TTCTTCGACGGTTCC TERM 146 450176 - 450160 - H 75 -6.5 -4.38927 | GGCTGAGAGAACAAA GGTGAGA ACT TCGCACC GGAAAATTCTCGACC RHA1_ro08477 450327 - 451808 + | amino acid permease RHA1_ro08478 451805 - 452554 + | IclR family transcriptional regulator RHA1_ro08479 453866 - 452838 - | hypothetical protein RHA1_ro08480 454879 - 454535 - | hypothetical protein RHA1_ro08481 456635 - 454893 - | hypothetical protein TERM 147 455143 - 455178 + g 75 -8.9 -4.11216 | gap 1 TCGACTCGGGCGGTA CGGTGCG-CCGGGCGC AGGTC GTGCACGGGCGCAACG TTTTCCAGGTCGCCA RHA1_ro08482 457011 - 456733 - | hypothetical protein RHA1_ro08483 457379 - 457050 - | hypothetical protein TERM 148 457417 - 457448 + H 81 -13.2 -3.68222 | opp_overlap 457426, overlap 457426 TTGAAGAACAGCAGG TCGATGAAATTCCG AGGT CGGAATTTTGTCGA TTATTCCGATTCCCG TERM 149 457426 - 457439 + H 79 -6.7 -4.50943 | opp_overlap 457426, overlap 457417 AGCAGGTCGATGAAA TTCCG AGGT CGGAA TTTTGTCGATTATTC RHA1_ro08484 457645 - 458877 + | integrase/recombinase RHA1_ro08485 458874 - 459809 + | integrase/recombinase RHA1_ro08486 459806 - 461125 + | integrase/recombinase RHA1_ro08487 462393 - 461128 - | transposase mutator family protein TERM 150 462158 - 462172 + g 100 -11.4 -4.74917 | overlap 462168 ACGGTCTTCGTCCGC CTCCCG TTC CGGGAG TTTTCTCTGTTTCGT RHA1_ro08488 463035 - 462442 - | hypothetical protein TERM 151 462951 - 462977 + g 73 -7.1 -4.1964 | TGACCACTCGTGTGG CCCGGACCCGG GCCTG CCGGACCTGGG TTTTGAGGTGTTCGA RHA1_ro08489 463465 - 463124 - | sigma factor, includes region 4 RHA1_ro08490 463583 - 464122 + | helicase RHA1_ro08491 464951 - 464238 - | hypothetical protein TERM 152 465159 - 465137 - H 87 -15 -3.5774 | opp_overlap 465137 AGGGAATGTTTTAAA TTGTCCAGCA GCC TGCTGGACAA TTTCTACAAGTATGG TERM 153 465137 - 465159 + H 91 -15 -3.88787 | opp_overlap 465137 AGGGAATGTTTTAAA TTGTCCAGCA GCC TGCTGGACAA TTTCTACAAGTATGG RHA1_ro08492 465715 - 466113 + | hypothetical protein RHA1_ro08493 466358 - 466849 + | hypothetical protein RHA1_ro08494 467864 - 466962 - | transposase TERM 154 468125 - 468114 - R 72 -3.6 -4.62069 | CTTCGACCTGAAAAA CGAG GCGC CCCG GTGAGCATGATTCGG RHA1_ro08495 469635 - 468196 - | transposase TERM 155 469075 - 469037 - G 78 -13.2 -3.57462 | gap 1 GACCGCAGCTTGAAA CCGATCGCGTGCGCACG CCTGCC CGC-CGCACGGGATCGG TCCCGGACCGTGGTG RHA1_ro08496 470411 - 470166 - | hypothetical protein TERM 156 470792 - 470802 + G 71 -2.4 -4.62471 | GGGGTCAGGCGGATC CGGG CAG CACG TTTTTCGAGGTTGCC RHA1_ro08497 470724 - 471014 + | hypothetical protein RHA1_ro08498 471401 - 471715 + | ATP-dependent DNA ligase TERM 157 471858 - 471872 + T 89 -10 -4.52047 | GCCTCTCGGCAAGTG GTCGCT CGC AGCGAC TTTTCTGGTGTGGTA RHA1_ro08499 472750 - 471998 - | hypothetical protein TERM 158 472459 - 472472 + g 72 -5.9 -4.2558 | GCGACCTGAAACACT GCCTG TACG CGGGC TTTTCGTGCACGGTC RHA1_ro08500 473150 - 472803 - | hypothetical protein RHA1_ro08501 473758 - 473366 - | hypothetical protein RHA1_ro08502 473830 - 474972 + | transposase RHA1_ro08503 476207 - 475407 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro08504 477255 - 476233 - | ABC sugar transporter, periplasmic substrate binding protein rbsC 478265 - 477252 - | ABC ribose transporter, permease component RHA1_ro08506 479260 - 478262 - | ABC ribose transporter, permease component RHA1_ro08507 480806 - 479253 - | ABC ribose transporter, ATP-binding component TERM 159 479640 - 479655 + g 79 -5.4 -4.68424 | gap 1, overlap 479642 GTTGACCTCGCCGGC GA-GGCC GGT GGCCATC TTTTTCAGTGCCTTG TERM 160 481038 - 480991 - R 86 -18.5 -2.52464 | opp_overlap 480992 CCGTGGCTGAATGCA GACGCGGTGGTAATCGATCGG GTGAAT CCGATCGGTTACCACCGCGGT GTCTGCGCCGAGGCG TERM 161 480992 - 481037 + r 100 -24.9 -2.87132 | opp_overlap 480991 CGTGGCTGAATGCAG ACGCGGTGGTAATCGATCGGG TGAA TCCGATCGGTTACCACCGCGG TGTCTGCGCCGAGGC RHA1_ro08508 481845 - 481063 - | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 162 481545 - 481579 + g 83 -15 -3.63991 | AGTCGTCGTCGGTGA CGTCGGCGATTGCACC GTA GGTGTAAATGCCGGCG TTGTTGACCATGATG RHA1_ro08509 482310 - 481921 - | hypothetical protein TERM 163 482248 - 482263 + g 82 -11.8 -4.11216 | GTCCTGCTCGACGAT CGCCCG GTAC CGGGCG TTTTCGAGGTCCCGG RHA1_ro08510 483436 - 482360 - | maleylacetate reductase RHA1_ro08511 484347 - 483433 - | catechol 1,2-dioxygenase RHA1_ro08512 485069 - 484344 - | short-chain alcohol dehydrogenase RHA1_ro08513 486061 - 485114 - | hypothetical protein RHA1_ro08514 486108 - 486872 + | transcriptional regulator RHA1_ro08515 487040 - 488245 + | transmembrane efflux protein RHA1_ro08516 488317 - 488538 + | hypothetical protein RHA1_ro08517 488535 - 488864 + | hypothetical protein RHA1_ro08518 489894 - 489013 - | nucleoside-diphosphate-sugar epimerase RHA1_ro08519 490316 - 489891 - | hypothetical protein RHA1_ro08520 490379 - 491023 + | TetR family transcriptional regulator RHA1_ro08521 491876 - 491220 - | hypothetical protein RHA1_ro08522 492002 - 492517 + | hypothetical protein RHA1_ro08523 492514 - 493161 + | hypothetical protein RHA1_ro08524 493808 - 493203 - | hypothetical protein RHA1_ro08525 494572 - 493973 - | site-specific DNA recombinase/resolvase RHA1_ro08526 494749 - 496008 + | transposase RHA1_ro08527 496993 - 496223 - | insertion sequence IS21 ATP-binding protein RHA1_ro08528 498516 - 497002 - | transposase TERM 164 499204 - 499174 - g 73 -12.7 -3.53444 | gap 1, opp_overlap 499202 GCACCTCCCTCGAAA TCGAGTACCGATGG CCCA CCATCGGC-CTCGA CCGGACACGCGTCGT RHA1_ro08529 498672 - 499271 + | hypothetical protein RHA1_ro08530 499697 - 499374 - | transposase RHA1_ro08531 500530 - 499694 - | IS30 family transposase RHA1_ro08532 501572 - 500586 - | IclR family transcriptional regulator TERM 165 501475 - 501499 + g 75 -8.6 -4.11216 | gap 2, overlap 501446 501493 GTCGGCGGCGACTTC CGCTCGACCACC GGC GG-GGTCG-GCG TTTTCCCGGTGCCGA RHA1_ro08533 501843 - 502886 + | oxidoreductase RHA1_ro08534 503040 - 503804 + | hypothetical protein RHA1_ro08535 503798 - 504103 + | hypothetical protein RHA1_ro08536 507017 - 504579 - | ABC transporter ATP-binding protein RHA1_ro08537 507118 - 507525 + | hypothetical protein RHA1_ro08538 507751 - 507509 - | acyl-CoA-binding protein TERM 166 507716 - 507766 + gT 80 -11.8 -3.72893 | gap 1 CCACCCGTCAGGTGA CCGTGACCGTTGCG-GCGACCGC TCCGCT GCTGTCACACACCACGGTCACGG TTTGCTCGCCGGGTG RHA1_ro08539 508637 - 507708 - | hypothetical protein TERM 167 508270 - 508250 - GH 88 -8.9 -4.59773 | TTCCATCGCCAAAAA GCACCAGGG GAA CCGTGGCGC CGACACACACAGCGG RHA1_ro08540 508626 - 510587 + | serine/threonine protein kinase RHA1_ro08541 511631 - 510738 - | transposase/integrase RHA1_ro08542 511978 - 511628 - | transposase sfuA2 512369 - 513409 + | ABC Fe(3+) transporter, substrate binding protein SfuA sfuB2 513430 - 514995 + | ABC Fe(3+)-transporter, permease protein SfuB sfuC2 514992 - 516032 + | Fe(3+)-transporting ATPase protein SfuC TERM 168 516152 - 516139 - f 75 -3.8 -4.59982 | CGAGAACGAAACAAA CTGG ACACGA CCAG CGAGGTGTGTTGCCG RHA1_ro08546 516509 - 517291 + | methyltransferase TERM 169 518536 - 518574 + G 74 -12.5 -3.53563 | gap 1 CCGGCCGCGTGCGGG TGTTGACCACCGGG-CCG ACCG CGGATCTGGCGGTCAACA TTTACCCCGGGCTGT TERM 170 521790 - 521751 - g 78 -16.4 -3.06796 | gap 1, opp_overlap 521748 521776, overlap 521761 TTCCATTTCACCGAA CGCCA-CGACACCGGCGGG CAA CCCGCCGGCATCGACGCCG AGCTGGTGTACTCGA TERM 171 521779 - 521761 - g 78 -17.4 -2.80994 | opp_overlap 521748 521776, overlap 521751 CCGAACGCCACGACA CCGGCGGG CAA CCCGCCGG CATCGACGCCGAGCT RHA1_ro08547 517422 - 521882 + | non-ribosomal peptide synthetase RHA1_ro08548 522014 - 522490 + | hypothetical protein TERM 172 522864 - 522908 + G 86 -18.6 -3.14211 | gap 1, overlap 522867 522883 GTGGTTCTCGTCGCC CGCTTGCGCGCGCTGGTGCGC CGCG GCGCACCAGCGCGTCCG-GTG TTGCTCACCGCGGGT TERM 173 522867 - 522906 + G 90 -20 -3.13403 | overlap 522864 522883 GTTCTCGTCGCCCGC TTGCGCGCGCTGGTGCGC CGCG GCGCACCAGCGCGTCCGG TGTTGCTCACCGCGG RHA1_ro08549 522534 - 523226 + | response regulator, two-component system RHA1_ro08550 524601 - 523192 - | sensor histidine kinase RHA1_ro08551 524778 - 525611 + | secreted hydrolase RHA1_ro08552 526565 - 525855 - | hypothetical protein RHA1_ro08553 527578 - 526562 - | membrane-associated phosphatase RHA1_ro08554 527614 - 528198 + | hypothetical protein RHA1_ro08555 528217 - 529167 + | hypothetical protein RHA1_ro08556 529329 - 530309 + | hypothetical protein RHA1_ro08557 531123 - 530422 - | hypothetical protein TERM 174 530598 - 530571 - G 72 -6.9 -4.26076 | gap 1 TCAGGTCTACGAAAA GCGGGAC-GGCG AAGAA CGCCAGCACCGC TGTGACATAGAGGTA RHA1_ro08558 531163 - 531543 + | hypothetical protein RHA1_ro08559 531933 - 533231 + | esterase RHA1_ro08560 534323 - 533385 - | deacetylase TERM 175 533681 - 533695 + g 73 -7.1 -4.13343 | opp_overlap 533670, overlap 533671 AGTAGGGTGCGGCGT CGACG CCGTA CGTCG TTTTCAGGAATTTGT TERM 176 534448 - 534475 + H 74 -10.6 -3.72576 | gap 1, opp_overlap 534408 AGCCGACGTGAGCCG GAGCCGCATGTCC ACG GGACATGCG-CAC TTTGCTAGGACCGAA RHA1_ro08561 534663 - 535364 + | porin protein MspA TERM 177 535458 - 535409 - f 100 -28.1 -4.03078 | gap 1, opp_overlap 535415 535417, overlap 535412 535415 CGACGACACGAGAAA TGACAACAGCAGGCCGACGCGACC GAC AGTCGCGTCGGCCTGCTGTTG-CG TGGGCGGTCCGAGCG TERM 178 535456 - 535412 - f 100 -35.3 -3.0558 | opp_overlap 535415 535417, overlap 535409 535415 CGACACGAGAAATGA CAACAGCAGGCCGACGCGACC GAC AGTCGCGTCGGCCTGCTGTTG CGTGGGCGGTCCGAG TERM 179 535415 - 535453 + F 100 -30.5 -3.05816 | opp_overlap 535415 535412 535409, overlap 535417 CACGAGAAATGACAA CAGCAGGCCGACGCGAC CGACA GTCGCGTCGGCCTGCTG TTGCGTGGGCGGTCC TERM 180 535453 - 535415 - f 100 -31.2 -3.65986 | opp_overlap 535415 535417, overlap 535412 535409 CACGAGAAATGACAA CAGCAGGCCGACGCGACC GAC AGTCGCGTCGGCCTGCTG TTGCGTGGGCGGTCC TERM 181 535417 - 535451 + F 100 -27.3 -3.08798 | opp_overlap 535415 535412 535409, overlap 535415 CGAGAAATGACAACA GCAGGCCGACGCGAC CGACA GTCGCGTCGGCCTGC TGTTGCGTGGGCGGT RHA1_ro08562 535458 - 536048 + | hypothetical protein RHA1_ro08563 539286 - 536632 - | ABC transporter membrane protein RHA1_ro08564 539996 - 539283 - | ABC lipoprotein transporter, ATP-binding component TERM 182 539741 - 539718 - G 71 -11 -3.57144 | gap 1, overlap 539723 GCTCGGAGCCTGAAA GACCAC-CCCG ATG CGGGTGCGGTC GCGGCGGGGATCGGC RHA1_ro08565 540670 - 539996 - | ABC lipoprotein transporter, ATP-binding component RHA1_ro08566 541326 - 540667 - | lipoprotein TERM 183 542715 - 542687 - g 71 -11 -3.56099 | gap 1 GACAACGTTCTCAAA GCAGTG-CGGGCG AGCA CACCCGACACCGC GACCGAGACACAGAC RHA1_ro08567 541430 - 542761 + | hypothetical protein RHA1_ro08568 542770 - 543141 + | hypothetical protein RHA1_ro08569 543232 - 543891 + | hypothetical protein TERM 184 543933 - 543973 + T 84 -16.8 -2.87931 | opp_overlap 543939 AAGATTCTATTCCCC GAAGCATCGCCGGTCCCC ACTCC GAGGACCGGCGATGCAGC TCTATCCGGGGTGAA TERM 185 543967 - 543939 - T 90 -18.9 -2.71364 | opp_overlap 543933 CTATTCCCCGAAGCA TCGCCGGTCCCCA CTC CGAGGACCGGCGA TGCAGCTCTATCCGG RHA1_ro08570 545010 - 544741 - | hypothetical protein RHA1_ro08571 545015 - 545452 + | hypothetical protein RHA1_ro08572 545551 - 546738 + | hypothetical protein RHA1_ro08573 546804 - 547106 + | hypothetical protein RHA1_ro08574 548298 - 547276 - | ribonuclease RHA1_ro08575 549327 - 548518 - | hypothetical protein RHA1_ro08576 549814 - 549506 - | hypothetical protein RHA1_ro08577 550347 - 549811 - | hypothetical protein RHA1_ro08578 550439 - 550999 + | hypothetical protein RHA1_ro08579 551176 - 551367 + | hypothetical protein RHA1_ro08580 551672 - 552175 + | hypothetical protein RHA1_ro08581 552626 - 552366 - | hypothetical protein RHA1_ro08582 552727 - 553197 + | hypothetical protein RHA1_ro08583 553511 - 554173 + | hypothetical protein RHA1_ro08584 555132 - 554788 - | LuxR family transcriptional regulator TERM 186 555161 - 555179 + H 74 -5.3 -4.50943 | gap 1, overlap 555130 555127 555162 CGGCACGCAGGCCGA CG-ACACC GGGT GGTGTCCG TTTTGTCCGTTGTTC TERM 187 555798 - 555832 + G 74 -14.3 -3.30124 | overlap 555799 CGGCAGCGCAAGTCT TGCTCGGCG-CCCGCCG CGA CGGCGGGGCGCTG-GCG TTCTACGACCTCACC TERM 188 557182 - 557151 - g 72 -6.4 -4.30844 | gap 1, overlap 557153 ACGCGACCACGAAAA CCGCGGCGAAGACCG CAT CGGCCACCG-CGCTG ATCGAGGCACTCTTC RHA1_ro08585 555329 - 557329 + | exoribonuclease II RHA1_ro08586 558171 - 557374 - | hypothetical protein RHA1_ro08587 559607 - 558171 - | hypothetical protein RHA1_ro08588 559744 - 559983 + | cold shock protein CspA RHA1_ro08589 560289 - 561728 + | transposase TERM 189 561800 - 561811 + F 72 -3.6 -4.62069 | CCGAATCATGCTCAC CGGG GCGC CTCG TTTTTCAGGTCGAAG RHA1_ro08590 561881 - 562963 + | transposase RHA1_ro08591 563777 - 563001 - | glyoxalase/bleomycin resistance protein dioxygenase superfamily protein RHA1_ro08592 563754 - 564671 + | hypothetical protein TERM 190 566004 - 566024 + FH 71 -14.1 -2.72661 | GGCGCCCCGGACTTG GGTGATGCA CGG TGCATCACC TACTTCCGAGTGATG RHA1_ro08593 566223 - 566780 + | hypothetical protein RHA1_ro08594 567538 - 567173 - | hypothetical protein RHA1_ro08595 568075 - 569382 + | transposase TERM 191 569587 - 569603 + F 78 -8.1 -4.45544 | TTCTCGCGGTGTAAC TCTATGT CTC ACATAGA TTTTGATTCATCACG TERM 192 569863 - 569838 - f 81 -11.1 -4.1585 | gap 1 TGACAACTCGGAAAA GTCG-GGGCGGG CGC CCAGCCCGCGAC GTCGCCGTTCGCCAT TERM 193 570359 - 570318 - f 100 -16 -4.77036 | gap 1, opp_overlap 570318, overlap 570319 570320 CTCCACTAGCAAAAA CG-TCGGTGGGTCCCACCC TCTAC GGATGAGACCCACCGAACA TATCTGGCCGTTCCA TERM 194 570357 - 570319 - f 93 -17.5 -3.4574 | opp_overlap 570318, overlap 570318 570320 TCCACTAGCAAAAAC GTCGGTGGGTCCCACCC TCTAC GGATGAGACCCACCGAA CATATCTGGCCGTTC TERM 195 570356 - 570320 - f 100 -21 -2.66962 | opp_overlap 570318, overlap 570319 570318 CCACTAGCAAAAACG TCGGTGGGTCCCACCC TCTAC GGATGAGACCCACCGA ACATATCTGGCCGTT TERM 196 571216 - 571230 + G 73 -10 -3.88178 | TCTCGTGGCCCCCTA TCCCCT TCT AGGGGA TTTAAGTTGTTATCT TERM 197 571624 - 571609 - g 72 -3.2 -4.59109 | gap 1, overlap 571610 571611 GAGATGGCCCAAAAA GCGGCCC AGG AGGCC-C GTCAGCGCATTATCG RHA1_ro08596 570778 - 571761 + | replication protein RHA1_ro08597 572842 - 572267 - | hypothetical protein TERM 198 573496 - 573484 - g 75 -9.1 -4.15222 | overlap 573494 ACGTTTTGCAACAAA GCGTG AAT CACGC GCCGACCCGGCGTCG RHA1_ro08598 573033 - 573731 + | hypothetical protein TERM 199 573726 - 573758 + F 93 -19.3 -3.06501 | overlap 573728 TCACCCACATTGTCA CGCTGAGGTGATGCA CCG TGCATCACCTCGGTG TTGCGTGGAGGTGTG TERM 200 573728 - 573756 + F 89 -18.3 -3.08996 | overlap 573726 ACCCACATTGTCACG CTGAGGTGATGCA CCG TGCATCACCTCGG TGTTGCGTGGAGGTG TERM 201 573866 - 573820 - f 73 -12.5 -3.34344 | gap 2, overlap 573826 TGACGCTCGAATGAA GGTAAATCACTCAGGGTGATGCA CCG TGCATCACCC-GCG-GACTCACC CCCCCACGTGGCCAT RHA1_ro08599 573970 - 575751 + | ParB family plasmid partitioning protein RHA1_ro08600 575862 - 576719 + | ParA family chromosome partitioning ATPase RHA1_ro08601 576736 - 576987 + | hypothetical protein RHA1_ro08602 578193 - 577111 - | transposase RHA1_ro08603 578820 - 578386 - | hypothetical protein RHA1_ro08604 579561 - 578836 - | hypothetical protein RHA1_ro08605 580478 - 579558 - | ATPase involved in chromosome partitioning TERM 202 581039 - 581081 + H 100 -16.3 -4.82901 | opp_overlap 581039 CATAGTGGCGAAGTA CGTATCCGGTCGCGCGGAC GGCAG GTTCGCGCGGTCAGGTACG TTTTTGTGGAGCGCG TERM 203 581421 - 581469 + H 72 -8.2 -4.05026 | gap 1, overlap 581424 CGCATTAGGCCAGCC CTACCCCTTTCTGGA-TTACGTC ACTT GACGAAAATCCGGAAGGGGCTCG TTCTTTCGCTTTCGA TERM 204 581664 - 581677 + H 70 -8.1 -3.95787 | overlap 581673 AAGCGCCGCACAGGT CTGCG GGAC CGCAG TTTCTGCGTCTCGTG TERM 205 581824 - 581790 - H 74 -4.8 -4.58663 | overlap 581801 AGCATCCCGCAAAAA CAGAGGCAAAAGGACG CTA CGCCCAGTCGCTTCCG CAATCTGATATCAGA TERM 206 581813 - 581801 - H 72 -6.9 -4.30885 | overlap 581790 AAAACAGAGGCAAAA GGACG CTA CGCCC AGTCGCTTCCGCAAT RHA1_ro08606 582061 - 583260 + | integrase RHA1_ro08607 583510 - 584616 + | hypothetical protein TERM 207 584724 - 584769 + T 78 -14.1 -3.29144 | opp_overlap 584740, overlap 584726 584727 TGGAATGCGGGTGCG GACTTGCCGCAGGCAATACGT CCGT ACGTATTGCCTGCGGGGAATG TTCTACCGCCCGTGC TERM 208 584726 - 584767 + T 89 -16.7 -3.21395 | opp_overlap 584740, overlap 584724 584727 GAATGCGGGTGCGGA CTTGCCGCAGGCAATACGT CCGT ACGTATTGCCTGCGGGGAA TGTTCTACCGCCCGT TERM 209 584727 - 584766 + T 91 -20.2 -2.52623 | opp_overlap 584740, overlap 584726 584724 AATGCGGGTGCGGAC TTGCCGCAGGCAATACGT CCGT ACGTATTGCCTGCGGGGA ATGTTCTACCGCCCG RHA1_ro08608 585412 - 584906 - | helicase RHA1_ro08609 586055 - 586396 + | lysyl tRNA synthetase-like protein TERM 210 586463 - 586425 - T 100 -21.8 -3.87815 | CGCGAGTTCGACAAA CAGCCTCCAGCCATCTCA CTT CGAGTTGGCCGGAGGCTG TGGCAGTTCCACGGT RHA1_ro08610 586795 - 586478 - | integration host factor RHA1_ro08611 588926 - 588096 - | transposase RHA1_ro08612 589572 - 589036 - | TetR family transcriptional regulator TERM 211 589683 - 589716 + H 80 -13.8 -3.33696 | overlap 589703 589704 CGGTGCGCGGGTGGC GCCGACTCGCGGGG ACGCCA CCGGGCGAGTCGGC TTCGTTGCCGAGAAG TERM 212 590065 - 590054 - H 79 -2.2 -5.0133 | overlap 590056 GATCCGTCGAAAAAA CAGT CATG ACCG ACTTCGATTCAGCGA RHA1_ro08613 590613 - 592460 + | exoribonuclease II RHA1_ro08614 592861 - 593124 + | hypothetical protein RHA1_ro08615 594018 - 593371 - | DNA hydrolase TERM 213 593914 - 593889 - G 75 -16.2 -2.82623 | opp_overlap 593891, overlap 593886 593891 CGGCGCCGAGAAGGA CACCGGGCAG GGCTGT CTGCCCGGTG TATGGCTCCCAGCGG purA2 595318 - 594026 - | adenylosuccinate synthetase RHA1_ro08617 596394 - 595408 - | hypothetical protein RHA1_ro08618 597489 - 596401 - | hypothetical protein TERM 214 597575 - 597559 - H 75 -3.6 -4.77036 | TGGGATCAGCAAAAA GCAACG TCGAT CGATGC CACCCATGTCGGCGG cspA2 597844 - 598047 + | CspA family cold-shock protein TERM 215 598060 - 598090 + T 100 -19 -4.52589 | overlap 598061 TGAACCAGTGTTATG TGGGGACCGCATCC GGT GGGTGCGGTCCCCC TTTTATATCGCCGGA TERM 216 598061 - 598089 + T 100 -22.5 -3.31232 | overlap 598060 GAACCAGTGTTATGT GGGGACCGCATCC GGT GGGTGCGGTCCCC CTTTTATATCGCCGG RHA1_ro08620 599716 - 598400 - | aminotransferase class III argE 600048 - 601322 + | acetylornithine deacetylase RHA1_ro08622 601319 - 602137 + | IclR family transcriptional regulator RHA1_ro08623 602217 - 603170 + | acetoin dehydrogenase alpha subunit RHA1_ro08624 603163 - 604167 + | acetoin dehydrogenase beta subunit RHA1_ro08625 604191 - 604976 + | hypothetical protein RHA1_ro08626 605005 - 606354 + | MFS superfamily proline/ betaine transporter RHA1_ro08627 606351 - 607358 + | alcohol dehydrogenase RHA1_ro08628 607355 - 607759 + | endoribonuclease TERM 217 608830 - 608814 - g 71 -10.9 -3.66018 | CCACTACTTCAACAA CATCGAC GAC GTCGATG CGGCTCTACAAGTAC RHA1_ro08629 607756 - 608880 + | hypothetical protein RHA1_ro08630 608886 - 609614 + | oxidoreductase RHA1_ro08631 609611 - 610387 + | oxidoreductase TERM 218 610757 - 610803 + T 70 -13.7 -2.55015 | gap 1, overlap 610754 GCCAGTGGCGCATTG TC-CACGCTGGTGGCCTCCGCT GACT GGCGGAGGCCACCACCGCACGA TCGGTTCGGTGAGAT limC2 611661 - 610819 - | (+)-trans-carveol dehydrogenase RHA1_ro08633 612052 - 611714 - | hypothetical protein RHA1_ro08634 612640 - 612137 - | AsnC family transcriptional regulator RHA1_ro08635 613764 - 612709 - | alcohol dehydrogenase RHA1_ro08636 615340 - 613820 - | amino acid transporter RHA1_ro08637 616567 - 615383 - | ferredoxin reductase RHA1_ro08638 616767 - 616567 - | ferredoxin RHA1_ro08639 617908 - 616799 - | ring hydroxylating dioxygenase RHA1_ro08640 618737 - 618312 - | hypothetical protein TERM 219 618543 - 618561 + g 73 -8 -4.16842 | overlap 618532 GCTGGTTCTGGCGGG CGCCGCGT CCG GCGGGGCG TTTGTTGGCGGTGGG RHA1_ro08641 619262 - 618753 - | citrate lyase beta subunit TERM 220 619363 - 619383 + r 70 -7.5 -3.97947 | GGCGGTGGCTGTGGC GACGATGCG GCG TGCATCGGC TTTGTGCTGGGTGGG RHA1_ro08642 620232 - 619933 - | hypothetical protein RHA1_ro08643 621024 - 620656 - | lysyl tRNA synthetase-like protein TERM 221 621343 - 621355 + G 77 -3.3 -4.67982 | overlap 621329 TCCTCGACGGTTCTG TTCCG TCA CGGCA TTTTGTTCGATGCAG RHA1_ro08644 621202 - 621525 + | hypothetical protein RHA1_ro08645 623474 - 622053 - | hypothetical protein RHA1_ro08646 624002 - 624622 + | transposase RHA1_ro08647 625944 - 624667 - | hypothetical protein RHA1_ro08648 627197 - 625941 - | hypothetical protein TERM 222 627111 - 627136 + g 72 -14.7 -2.83822 | opp_overlap 627105, overlap 627109 GCCGAATGAGTCCAC GGCAGCGCCTG CGAC CAGGCGCTGCA TGCTTCTCGGCTGCG RHA1_ro08649 628591 - 627194 - | non-ribosomal peptide synthetase RHA1_ro08650 629126 - 628572 - | non-ribosomal peptide synthetase TERM 223 629786 - 629815 + G 85 -15.9 -3.63266 | gap 1 CTGGATGAGTTGATC GATTG-GTCGTCGG CTC CCGACGACCCAATC TTTCGGATGACTTTT RHA1_ro08651 629636 - 630964 + | lysine 2,3-aminomutase RHA1_ro08652 630961 - 631329 + | hypothetical protein RHA1_ro08653 631326 - 632426 + | monooxygenase RHA1_ro08654 632410 - 633753 + | L-lysine 6-monooxygenase (NADPH) metS2 633750 - 635225 + | methionine--tRNA ligase RHA1_ro08657 637003 - 636380 - | thioesterase RHA1_ro08656 635222 - 636442 + | hypothetical protein TERM 224 636814 - 636788 - Gf 71 -12.2 -3.24747 | GGCGGACACCACCAA CTCGACGTCGAC CGC GTCGTCGGCGAG CAGTCGGGCGGCCTC RHA1_ro08658 637107 - 638354 + | dehydrogenase TERM 225 638914 - 638965 + G 86 -19.4 -3.1855 | gap 1, overlap 638937 TGCTGTATCTCGATC CGGAGGAGGAC-GCGGCTTTGGCGT CGG ACGCCAGCGCCGCCGGCCTCTGCCG TTCGGTGTTCGGCGG RHA1_ro08659 638355 - 639635 + | hypothetical protein RHA1_ro08660 641185 - 639692 - | hypothetical protein RHA1_ro08661 641206 - 641661 + | hypothetical protein RHA1_ro08662 642284 - 641679 - | hypothetical protein TERM 226 642751 - 642795 + G 72 -14.1 -3.15861 | opp_overlap 642744 GCAACGAACGGCTGA CCCGGCCGGGTGGCTACCACG ATG CGTGGTGTGCGCACTGCCGGG TTGGTGGAAATCGTG RHA1_ro08663 642660 - 643163 + | hypothetical protein RHA1_ro08664 643184 - 644161 + | lipoprotein TERM 227 645196 - 645230 + G 70 -12 -3.34895 | overlap 645197 TTGGGCGACAGGGTG GTCGCGGCGGTCGGCA TGC TGCTGGCCGCGGCGGG TTACTTCCGGATGGC RHA1_ro08665 644158 - 645732 + | major facilitator superfamily multidrug resistance protein RHA1_ro08666 646164 - 645787 - | hypothetical protein RHA1_ro08667 646246 - 646497 + | hypothetical protein RHA1_ro08668 646494 - 646754 + | hypothetical protein TERM 228 646957 - 647005 + G 83 -14.6 -3.56092 | gap 1, overlap 646945 GACCGCGGCCTGCTG GCCCGTCGGA-CCGATCGGCAGC GTCT GCTGACGATCGGCTTCGACGACC TTTGGGGAATCCTGC TERM 229 647122 - 647155 + G 83 -15.3 -3.58533 | gap 1, overlap 647153 ATGGACGGCGTGTTT CGGCCGGCGAGTGGCA GGG TGCC-CTTGACGGCCG TTTCCACGGTTCTGC RHA1_ro08669 646918 - 647334 + | hypothetical protein RHA1_ro08670 647420 - 650395 + | hypothetical protein RHA1_ro08671 651534 - 650893 - | hypothetical protein TERM 230 652041 - 652057 + Gr 88 -13.7 -3.87815 | GGCCGCGTCTTCTCA GCGACCC GAA GGGTCGC TTTATCAGGATGACG RHA1_ro08672 651533 - 652420 + | epoxide hydrolase/ haloalkane dehalogenase RHA1_ro08673 652826 - 652503 - | hypothetical protein RHA1_ro08674 654007 - 652823 - | acyl-CoA dehydrogenase TERM 231 652996 - 653039 + g 74 -12.2 -3.62046 | CGGCGAATTGGCTGG CGCGGGCGCGGGCGTCGTAG ATGT CTCCGTCGCCGGTGGCCGTG TTGTTGAGGGCCTCG RHA1_ro08675 655455 - 654088 - | Rep protein TERM 232 655568 - 655582 + H 84 -8.5 -4.58236 | opp_overlap 655565 655568 GTGAATCTGAAACCA CCCCC ACCAA GGGGG TTTTCGTGTTTTCTG RHA1_ro08676 655588 - 655914 + | hypothetical protein RHA1_ro08677 656588 - 656094 - | hypothetical protein TERM 233 656708 - 656736 + GH 70 -11.6 -3.38314 | opp_overlap 656707, overlap 656705 656709 656711 ACCGGCCCAGATCAT CGACCGCGGCGG ATCTC CCGCCGCGATCA TCTTTGCGACTTCGG TERM 234 656709 - 656735 + GH 74 -15.1 -2.62667 | opp_overlap 656707, overlap 656708 656705 656711 CCGGCCCAGATCATC GACCGCGGCGG ATCTC CCGCCGCGATC ATCTTTGCGACTTCG RHA1_ro08678 656587 - 657411 + | hypothetical protein TERM 235 657663 - 657693 + FH 93 -17.6 -3.51825 | TCCGTTGAGGCTTGA GCCCCCTGGCCG CCGCTAA CGGTCAGGGGGC TTCTCGTTGCAATAG TERM 236 657781 - 657760 - fH 72 -2.9 -4.614 | opp_overlap 657761, overlap 657761 TGCAATCATATAAAA GCGATCGTT TAAA ACCGATCGT ATGTGCGCATCGTAA RHA1_ro08679 657851 - 658297 + | repressor protein RHA1_ro08680 658500 - 658844 + | hypothetical protein RHA1_ro08681 659443 - 658847 - | hypothetical protein RHA1_ro08682 660533 - 659436 - | hypothetical protein RHA1_ro08683 661066 - 660530 - | hypothetical protein RHA1_ro08684 662013 - 661453 - | hypothetical protein RHA1_ro08685 662681 - 662076 - | hypothetical protein TERM 237 662462 - 662494 + g 80 -16.9 -3.15544 | GGGCGACGTCTTCCG CCACGTCGGCGTCCG GAG CTGGCGCCGCCGTGG TTGGTGGAGGTACGG RHA1_ro08686 664266 - 662716 - | peptidase/ transglycosylase RHA1_ro08687 665114 - 664263 - | hypothetical protein RHA1_ro08688 667231 - 665114 - | hypothetical protein RHA1_ro08689 670263 - 667228 - | hypothetical protein TERM 238 667462 - 667448 - G 71 -11.4 -3.55801 | opp_overlap 667447 667446 AGGAACTGCTCGAAA CCCTGC CCG GCAGGG AGTTTGAGGAGCTTG RHA1_ro08690 670664 - 670260 - | hypothetical protein RHA1_ro08691 671020 - 670703 - | hypothetical protein RHA1_ro08692 671011 - 672273 + | hypothetical protein RHA1_ro08693 672693 - 674348 + | DNA translocase RHA1_ro08694 674445 - 674789 + | hypothetical protein RHA1_ro08695 674795 - 676135 + | hypothetical protein TERM 239 677039 - 677068 + G 76 -14.2 -3.53012 | GAGGCTTCGCGCTCG GCGCGCCGGCGG CCGTCA CCGTCGGGGCGC TTTCCGCGGCAGGAG RHA1_ro08696 676213 - 677487 + | hypothetical protein RHA1_ro08697 677506 - 678240 + | hypothetical protein TERM 240 678393 - 678336 - g 70 -15 -2.70932 | gap 2, overlap 678390 CCGTCGTTGCAACGA GTCCATCCCCGTGCGCCTCGAGTTGCAC CGAC GTGCAACTCGAGGCGCGCAAT-ACGG-C GCAACGCGGGCAACC RHA1_ro08698 678257 - 678943 + | hypothetical protein RHA1_ro08699 679007 - 680041 + | phage excisionase RHA1_ro08700 680506 - 682524 + | hypothetical protein TERM 241 682837 - 682810 - g 78 -12 -3.72642 | gap 1, overlap 682813 AACCAAGCACTCAAA GACCCCGAGTCGG TCA CCGAC-CGGGACC CACCACCAACGCGTT RHA1_ro08701 682538 - 683032 + | hypothetical protein RHA1_ro08702 683029 - 683838 + | N-formylglutamate aminohydrolase RHA1_ro08703 683838 - 684989 + | hypothetical protein TERM 242 685034 - 685059 + F 93 -17.7 -3.53224 | opp_overlap 685023 AGAACTCTGCTCGCA CGACCATGCAC GGCC GTGCATGGTCG TTTGCCACCAAGCTG RHA1_ro08704 685053 - 685406 + | hypothetical protein RHA1_ro08705 685462 - 685803 + | ArsR family transcriptional regulator RHA1_ro08706 685930 - 686436 + | hypothetical protein RHA1_ro08707 686526 - 687056 + | hypothetical protein RHA1_ro08708 687236 - 687589 + | hypothetical protein RHA1_ro08709 687689 - 688168 + | hypothetical protein RHA1_ro08710 689380 - 688349 - | hypothetical protein RHA1_ro08711 689521 - 689769 + | hypothetical protein RHA1_ro08712 690420 - 690064 - | hypothetical protein RHA1_ro08713 691151 - 690456 - | hypothetical protein RHA1_ro08714 691208 - 691705 + | hypothetical protein RHA1_ro08715 693288 - 692758 - | hypothetical protein RHA1_ro08716 693403 - 693684 + | hypothetical protein RHA1_ro08717 694307 - 693948 - | hypothetical protein RHA1_ro08718 694980 - 694300 - | hypothetical protein TERM 243 694740 - 694780 + gH 76 -2.6 -4.8048 | gap 2, overlap 694763 GCGATGGCGCTGGCG CGGACCGGCG-G-CGC CCACCGAAGAA GCGGCACGCTGGTCTG TTTTTCGTGTGAGCG TERM 244 695379 - 695395 + Gr 78 -13.7 -3.29144 | opp_overlap 695363 GTTGGCGGCCCGCGC GGTCGCC GAG GGCGACC TTGTCGACACCATCG RHA1_ro08719 694966 - 695631 + | TetR family transcriptional regulator RHA1_ro08720 696583 - 696311 - | hypothetical protein TERM 245 696459 - 696485 + g 86 -13 -4.2349 | opp_overlap 696459 696458 TTTGGTGGCGGAAAT GGGGTTCGTAGG TCA CCTGCGGACCTC TTTTCGCTGTACCCG RHA1_ro08721 697165 - 696590 - | hypothetical protein TERM 246 697193 - 697135 - G 74 -15.1 -3.01712 | gap 1 TGTTCTGCGCCAACA CGGGTCTGG-GTCGCGAGCTCGGCATCG TCAC CGATGCCGACGGCGCGGCACCGGTCCCG ATCGGCGGTCCACGA RHA1_ro08722 698070 - 697162 - | hypothetical protein RHA1_ro08723 698323 - 698820 + | hypothetical protein RHA1_ro08724 698817 - 699188 + | hypothetical protein RHA1_ro08725 699615 - 700001 + | hypothetical protein RHA1_ro08726 700011 - 701183 + | Na+/H+ antiporter RHA1_ro08727 701310 - 701615 + | hypothetical protein RHA1_ro08728 701720 - 702871 + | sensor histidine kinase KdpD RHA1_ro08729 703255 - 704187 + | sensory histidine kinase KdpD RHA1_ro08730 704320 - 706338 + | amino acid transporter RHA1_ro08731 706937 - 706518 - | transglycosylase RHA1_ro08732 707985 - 706954 - | hypothetical protein RHA1_ro08733 708734 - 708051 - | hypothetical protein RHA1_ro08734 709048 - 708758 - | hypothetical protein RHA1_ro08735 709128 - 709673 + | hypothetical protein RHA1_ro08736 710282 - 709701 - | hypothetical protein RHA1_ro08737 710761 - 710279 - | hypothetical protein RHA1_ro08738 711079 - 710807 - | hypothetical protein RHA1_ro08739 711956 - 711366 - | hypothetical protein RHA1_ro08740 713767 - 712367 - | hypothetical protein TERM 247 713267 - 713243 - G 86 -18.5 -3.15544 | opp_overlap 713257 713258 GTTGACCCCCATCAA CGCGGCGGCGG CGT CCGCCGCGGCG GCGAGCACGTGCTCG TERM 248 713257 - 713301 + g 88 -15.6 -3.68619 | gap 1, opp_overlap 713243, overlap 713258 ACGCGGCGGCGGCGT CCGCCG-CGGCGGCGAGCACG TGCT CGAGGTCGCCGTCGACGGCGA TTTGACTCAATTCGG TERM 249 713258 - 713300 + g 81 -19.1 -2.8085 | gap 1, opp_overlap 713243, overlap 713257 CGCGGCGGCGGCGTC CGCCG-CGGCGGCGAGCACG TGCT CGAGGTCGCCGTCGACGGCG ATTTGACTCAATTCG TERM 250 713337 - 713375 + g 77 -14.7 -3.18023 | gap 1, overlap 713334 GAGCGTTGTTCGCGG GC-CCTGTACGCGGCC GCCTCCAA GGCTGCGTACAGGCGC TGTTCGTGCTCCTGA RHA1_ro08741 714927 - 713980 - | hypothetical protein RHA1_ro08742 715143 - 715493 + | hypothetical protein RHA1_ro08743 715490 - 717508 + | hypothetical protein RHA1_ro08744 717508 - 718305 + | hypothetical protein TERM 251 719193 - 719144 - g 71 -10 -3.72576 | gap 3 GGCGCCGGCACCAAA GGGGCGGCGACTGTCG-GCCCGCGA ACC TC-CGGCCACGGCA-TCGCCGACCC ACGCCCCCAAGGAAT RHA1_ro08745 718628 - 720613 + | hypothetical protein RHA1_ro08746 720681 - 721523 + | hypothetical protein TERM 252 722184 - 722203 + G 77 -11.4 -3.86202 | overlap 722185 AGGGTGTGGTGCGGG TGCCGTCG CGGG CGACGGCG TTTCGTGTGCTCGAG RHA1_ro08747 721523 - 723610 + | transposase RHA1_ro08748 723607 - 724734 + | hypothetical protein RHA1_ro08749 727350 - 727697 + | hypothetical protein TERM 253 728220 - 728207 - g 81 -8.1 -4.59853 | CGAAGCCCGGAAAAA GGTGG TCGA CCACC TGAAAGAGCAAGGCA RHA1_ro08750 727875 - 730244 + | hypothetical protein RHA1_ro08751 730314 - 730484 + | hypothetical protein RHA1_ro08752 730481 - 731569 + | glycohydrolase RHA1_ro08753 731802 - 731623 - | hypothetical protein RHA1_ro08754 731955 - 732302 + | hypothetical protein RHA1_ro08755 732867 - 732526 - | ATP-dependent DNA ligase RHA1_ro08756 732997 - 733266 + | hypothetical protein RHA1_ro08757 733263 - 733589 + | hypothetical protein TERM 254 734092 - 734136 + F 72 -12.8 -3.16564 | gap 1, overlap 734087 AATTGCTCAATCGGC GCCCGATCTCTGCCCCAACGG CAAC CCGTTGGGGCC-AGGCCGTGC TTGGTGGGATGGGAG RHA1_ro08758 734361 - 735872 + | hypothetical protein RHA1_ro08759 735951 - 736313 + | hypothetical protein TERM 255 736492 - 736445 - f 82 -6.9 -4.66537 | GTGGTGAACAGAAAA GGGGCTCACCGATGGCCAACC CGCATC GACTGACCACCGCTCAGGCCC TCGAGTTGATCAAGG RHA1_ro08760 736456 - 736701 + | hypothetical protein RHA1_ro08761 736923 - 737618 + | hypothetical protein RHA1_ro08762 737685 - 737972 + | hypothetical protein RHA1_ro08763 738073 - 738552 + | hypothetical protein RHA1_ro08764 738977 - 738699 - | hypothetical protein RHA1_ro08765 739613 - 739101 - | hypothetical protein RHA1_ro08766 739590 - 740099 + | hypothetical protein RHA1_ro08767 740873 - 740226 - | hypothetical protein RHA1_ro08768 741377 - 740883 - | hypothetical protein TERM 256 741069 - 741054 - G 79 -7.6 -4.50976 | TTTGACAGCAGAAAA TGTGAC ACGG GTCACA TCACTGTGACGGGGG RHA1_ro08769 742185 - 741619 - | hypothetical protein RHA1_ro08770 743127 - 742486 - | hypothetical protein RHA1_ro08771 744154 - 743120 - | hypothetical protein RHA1_ro08772 744446 - 744195 - | hypothetical protein TERM 257 744504 - 744489 - R 73 -11.8 -3.40371 | CAGTGGACGAATCAA CCCGCC GCCG GGCGGG GTCGGCGGGAAGGGG RHA1_ro08773 746565 - 744688 - | exoribonuclease R TERM 258 744720 - 744746 + g 76 -7.2 -4.30844 | GTGTCTCGATGAGCG CGGCCGCGGA TGCGGTC TTCGCCGCCG TTTTCGTGGTCGCGT RHA1_ro08774 746898 - 747479 + | hypothetical protein RHA1_ro08775 747911 - 747672 - | hypothetical protein RHA1_ro08776 748244 - 748534 + | hypothetical protein RHA1_ro08777 748531 - 748857 + | hypothetical protein TERM 259 748913 - 748886 - T 72 -11.2 -3.49777 | opp_overlap 748886 GTCGAGACACCAGAA CGGCCCCTGGAG AGTT CCGCAAGGGCCG TTTGCATCAGTCACG RHA1_ro08778 749629 - 749288 - | hypothetical protein TERM 260 749701 - 749657 - H 79 -11 -3.9392 | gap 1, opp_overlap 749664 749673 749700, overlap 749660 749663 749664 CTCGACGTGAAAGAA GAGTAAGTCGATGAAATTCCG AGGT CGGAATTTCCTCGA-TTATTC CGATTCCCGGGTTAT TERM 261 749696 - 749663 - H 72 -11.1 -3.50555 | opp_overlap 749664 749673, overlap 749660 749657 749664 GTGAAAGAAGAGTAA GTCGATGAAATTCCG AGGT CGGAATTTCCTCGAT TATTCCGATTCCCGG TERM 262 749664 - 749695 + H 87 -14.6 -3.68222 | opp_overlap 749663 749660 749657 749664, overlap 749673 TGAAAGAAGAGTAAG TCGATGAAATTCCG AGGT CGGAATTTCCTCGA TTATTCCGATTCCCG TERM 263 749695 - 749664 - H 75 -14.6 -2.6961 | opp_overlap 749664 749673, overlap 749663 749660 749657 TGAAAGAAGAGTAAG TCGATGAAATTCCG AGGT CGGAATTTCCTCGA TTATTCCGATTCCCG RHA1_ro08779 750027 - 751181 + | integrase/recombinase RHA1_ro08780 751850 - 751332 - | hypothetical protein RHA1_ro08781 752618 - 752238 - | hypothetical protein TERM 264 753284 - 753254 - g 74 -12.6 -3.65046 | gap 1, opp_overlap 753256 753262, overlap 753255 GGGCTACGTGAACAA CGCCCGGCGTGGG TATATC CCCACACCGGG-G ACATAGTCGCTTCGA RHA1_ro08782 752834 - 753322 + | hypothetical protein RHA1_ro08783 754013 - 753375 - | hypothetical protein TERM 265 753555 - 753566 + g 73 -7.2 -4.1822 | overlap 753550 CATCGGCAGTCCGGG GCCG TCTC CGGC TTTATTGGAGTCCAC TERM 266 753664 - 753620 - G 74 -11.3 -3.67976 | overlap 753652 TGCACGAACCCGAAA TCGGCACGGCGCCATCCGTTC CTC GAAGGAACGGCGCCTGGACGA AGCGGACGGACCAGC RHA1_ro08784 754381 - 754704 + | hypothetical protein RHA1_ro08785 754819 - 755154 + | hypothetical protein gdhA3 755324 - 756595 + | glutamate dehydrogenase (NAD(P)+) TERM 267 757166 - 757192 + G 74 -15.2 -3.09273 | GATGAGGAAGCCGCC GTCGAGTTCGCG CTG CGTGAGCTCGAC TATCTGTTCAAGACC TERM 268 757544 - 757522 - g 82 -19.2 -2.91912 | GCAGGGAGGCACATA CGGCGGCAAC GCC GTTGCCGCCG CGGCCGGTGTCGCGA gabT4 756650 - 757924 + | 4-aminobutyrate transaminase RHA1_ro08788 758956 - 758039 - | LysR family transcriptional regulator RHA1_ro08789 759031 - 759984 + | hypothetical protein TERM 269 759994 - 760032 + T 93 -13.9 -4.19336 | overlap 759987 760025 GGGTAATGCGGCGAA GGCCGTTGTCCCCGA GTATCTTTG TCGAGGGCAACGGCC TTTGTTGCCGTGGTT RHA1_ro08790 760894 - 760046 - | citrate lyase beta subunit RHA1_ro08791 761738 - 761100 - | GntR family transcriptional regulator gabD6 763336 - 761852 - | succinate-semialdehyde dehydrogenase (NAD(P)+) TERM 270 763207 - 763220 + g 78 -9.5 -4.11216 | opp_overlap 763204 TCACGGAGAGGACCT CCCCG GTGG CGGGG TTTTCGACCTCGAAC RHA1_ro08793 766248 - 763333 - | oxidoreductase TERM 271 765128 - 765186 + g 78 -16.7 -3.06133 | gap 2, overlap 765139 ACGCGCCAGAGTTTC CTGCGGGCGGCCGGGTCGCGGACCTCG CGGCCGT CGAGGACC-CG-CCCGTTCTCCCGCAG TTCGGTGAGCAGTTG RHA1_ro08794 766556 - 767440 + | hypothetical protein RHA1_ro08795 767865 - 769277 + | gamma-aminobutyrate permease RHA1_ro08796 770046 - 769357 - | GntR family transcriptional regulator RHA1_ro08797 770557 - 770207 - | hypothetical protein RHA1_ro08798 772076 - 770580 - | amino acid permease TERM 272 772439 - 772381 - R 77 -14.8 -2.89742 | gap 3, opp_overlap 772382 CCGAAGCCGTACAGA CGCGACGGAGCGGAACGCCGGTACAC-GA TGCC CCTGTATACCGGCGTCCCGCTCGGT--CG CTGCTATCCGGTGGG TERM 273 772382 - 772440 + r 100 -25.4 -2.63715 | opp_overlap 772381 CGAAGCCGTACAGAC GCGACGGAGCGGAACGCCGGTACACG ATGCCCC TGTATACCGGCGTCCCGCTCGGTCGC TGCTATCCGGTGGGT RHA1_ro08799 773693 - 772455 - | amidohydrolase RHA1_ro08800 775173 - 773728 - | major facilitator transporter RHA1_ro08801 775442 - 776290 + | transcriptional regulator TERM 274 777165 - 777201 + G 79 -15.1 -3.31461 | opp_overlap 777180 TTCGAGGCCCTCGAC GACGCACTCGAGGAACT GGG AGTTCCCCGCGAGCGTC TTCTGCACGTGGCTC RHA1_ro08802 776679 - 777401 + | 2-haloacid dehalogenase TERM 275 777497 - 777441 - f 100 -28.2 -3.20901 | gap 1 ACCTGACCAAGCGAA CACGTGCTCCCTCGTCGACCCGAACTC ACTC GAGGCCGGGTCGACGAGGGGGCA-GTG AAGCTGACGACCCGC RHA1_ro08803 777556 - 778785 + | tartrate dehydrogenase/ 3-isopropylmalate dehydrogenase RHA1_ro08804 779225 - 778968 - | hypothetical protein RHA1_ro08805 779285 - 780073 + | hypothetical protein TERM 276 780331 - 780317 - T 82 -7 -4.63218 | overlap 780318 780320 CCGCGGTCAACAAAA GGACCG GCG CGGGCC GGCGTGGTTACTGGT RHA1_ro08806 781040 - 780588 - | hypothetical protein RHA1_ro08807 781390 - 782430 + | 2-nitropropane dioxygenase RHA1_ro08808 783684 - 783211 - | AsnC family transcriptional regulator RHA1_ro08809 783768 - 784418 + | LysE family translocator protein RHA1_ro08810 784526 - 784846 + | hypothetical protein RHA1_ro08811 784910 - 785242 + | hypothetical protein citA4 786682 - 785459 - | citrate synthase 2 TERM 277 786632 - 786612 - G 74 -11.1 -3.73402 | AGACCGCTGACGAAA TCGGCAGGC GGG GCCTGCGGA GACCCCGCGAATGTG RHA1_ro08813 787264 - 786851 - | hypothetical protein RHA1_ro08814 787299 - 788132 + | hypothetical protein RHA1_ro08815 788141 - 788491 + | ferredoxin subunit RHA1_ro08816 788482 - 790377 + | electron transfer flavoprotein alpha/ beta subunit RHA1_ro08817 790362 - 790676 + | hypothetical protein RHA1_ro08818 790895 - 791143 + | hypothetical protein RHA1_ro08819 791772 - 791161 - | hypothetical protein RHA1_ro08820 791771 - 792202 + | hypothetical protein RHA1_ro08821 792558 - 792193 - | hypothetical protein RHA1_ro08822 792829 - 792560 - | hypothetical protein ttdB 793460 - 792855 - | L(+)-tartrate dehydratase beta subunit RHA1_ro08824 794355 - 793450 - | fumarate hydratase, class I RHA1_ro08825 794758 - 794369 - | succinate dehydrogenase hydrophobic membrane anchor protein sdhC 795258 - 794755 - | succinate dehydrogenase cytochrome b subunit RHA1_ro08827 796991 - 795255 - | succinate dehydrogenase flavoprotein subunit sdhB3 797692 - 796988 - | succinate dehydrogenase Fe-S protein subunit TERM 278 797621 - 797636 + g 78 -6.8 -4.5954 | opp_overlap 797606 797621, overlap 797611 CCGGTCGACCTGAAA GGACGT CAGG GCGTCC TTTTCTGTCCTCTGA RHA1_ro08829 798225 - 799226 + | hypothetical protein TERM 279 799966 - 799978 + G 75 -9.1 -4.15698 | GAGCCACCGCATGGC CGTGC TAC GCACG TTCTTTATCTACCTC RHA1_ro08830 799220 - 800554 + | major facilitator transporter RHA1_ro08831 802172 - 801318 - | IclR family transcriptional regulator RHA1_ro08832 802318 - 802689 + | hypothetical protein RHA1_ro08833 802775 - 803656 + | epoxide hydrolase RHA1_ro08834 804009 - 804257 + | hypothetical protein RHA1_ro08835 804657 - 805226 + | succinate-semialdehyde dehydrogenase (NAD(P)+), N-terminal RHA1_ro08836 806111 - 805212 - | transposase RHA1_ro08837 806434 - 806108 - | transposase RHA1_ro08838 806504 - 807433 + | succinate-semialdehyde dehydrogenase (NAD(P)+), C-terminal TERM 280 807762 - 807715 - f 83 -17.7 -2.53263 | gap 1, opp_overlap 807718 TTGACTGCTAACCCA CAGCTCG-TGCGGGCCCGCGGC CCATC GCCGCGGTCCCGCAACGAGTTC GGTAAGGCTGGGGGT TERM 281 807718 - 807759 + F 100 -23.8 -3.06183 | gap 1, opp_overlap 807715 ACTGCTAACCCACAG CTCG-TGCGGGCCCGCGGC CCATC GCCGCGGTCCCGCAACGAG TTCGGTAAGGCTGGG RHA1_ro08839 808080 - 808844 + | permease RHA1_ro08840 808872 - 809411 + | hypothetical protein RHA1_ro08841 809853 - 809473 - | WhiB family transcriptional regulator TERM 282 809945 - 809927 - R 70 -11.7 -3.34013 | CAGTCCCTGAAGTAA CGCACCC AGTCG GGGTGCG GCAGCGGAGTCCTCG ndh3 811663 - 810140 - | NADH dehydrogenase RHA1_ro08843 812917 - 811868 - | malate/L-lactate dehydrogenase serA3 813891 - 812914 - | phosphoglycerate dehydrogenase RHA1_ro08845 814786 - 813884 - | 3-hydroxyisobutyrate dehydrogenase RHA1_ro08846 815499 - 814783 - | permease RHA1_ro08847 817041 - 815878 - | galactarate dehydratase RHA1_ro08848 817328 - 817020 - | D-galactarate dehydrogenase RHA1_ro08849 817470 - 818213 + | GntR family transcriptional regulator RHA1_ro08850 819140 - 818238 - | LysR family transcriptional regulator RHA1_ro08851 819224 - 820297 + | hypothetical protein RHA1_ro08852 820817 - 824071 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro08853 824987 - 824289 - | GntR family transcriptional regulator RHA1_ro08854 825082 - 826302 + | muconate cycloisomerase RHA1_ro08855 826385 - 827851 + | permease TERM 283 827913 - 827871 - T 77 -11.3 -3.68908 | gap 1, overlap 827873 827874 827893 AAACACGCACGCAAA TACGCGGGATGATCCG-ACC AGAC GGCGCGGATCATCCCGCCCC GGGTGGGACTCGACG TERM 284 827911 - 827873 - T 88 -16.1 -3.41836 | gap 1, overlap 827871 827874 827893 ACACGCACGCAAATA CGCGGGATGATCCG-ACC AGAC GGCGCGGATCATCCCGCC CCGGGTGGGACTCGA TERM 285 827910 - 827874 - T 89 -19.6 -2.6462 | gap 1, overlap 827873 827871 827893 CACGCACGCAAATAC GCGGGATGATCCG-ACC AGAC GGCGCGGATCATCCCGC CCCGGGTGGGACTCG RHA1_ro08856 828753 - 828160 - | hypothetical protein RHA1_ro08857 828989 - 828750 - | hypothetical protein RHA1_ro08858 830281 - 828986 - | hypothetical protein RHA1_ro08859 831732 - 830377 - | hypothetical protein RHA1_ro08860 831775 - 832026 + | hypothetical protein RHA1_ro08861 832331 - 832873 + | hypothetical protein RHA1_ro08862 832905 - 833144 + | hypothetical protein RHA1_ro08863 833437 - 833186 - | transposase RHA1_ro08864 833783 - 833469 - | hypothetical protein TERM 286 834485 - 834497 + r 74 -10.5 -3.72576 | ACACGCGCATACGTT CCCCG TAT CGGGG TTTGCTCCGCAGGAG RHA1_ro08865 835111 - 834560 - | hypothetical protein RHA1_ro08866 836280 - 835189 - | hypothetical protein TERM 287 836454 - 836427 - R 100 -22 -3.1355 | CCCAGGCACACGTAA GCGGGCCGCGGC CACG GCCGCGACCCGC CCCTGCATCCGACGC RHA1_ro08867 836738 - 836469 - | hypothetical protein RHA1_ro08868 837347 - 836772 - | hypothetical protein RHA1_ro08869 837950 - 837420 - | hypothetical protein RHA1_ro08870 839027 - 838239 - | enoyl-CoA hydratase RHA1_ro08871 840364 - 839198 - | acetyl-CoA C-acetyltransferase RHA1_ro08872 840801 - 840361 - | acyl dehydratase RHA1_ro08873 842032 - 840731 - | transport protein TERM 288 841734 - 841712 - GR 79 -11.3 -3.86015 | opp_overlap 841711 841726 GAGCCCGGTGAGAAA TCTCAGCGG GATTG CCGCCGAGA GGTTATTTACGAATA RHA1_ro08874 843435 - 842053 - | major facilitator transporter RHA1_ro08875 843894 - 843454 - | hypothetical protein RHA1_ro08876 845054 - 843891 - | acetyl-CoA acetyltransferase acsA3 847015 - 845051 - | acetate--CoA ligase TERM 289 847214 - 847187 - R 93 -18.4 -3.24747 | CGGTGAGACGACGAA CGCCTCCCCCGG CGGG CAGGGGGAGGCG AACAGGAGCACAGGG RHA1_ro08878 847601 - 847230 - | thioredoxin RHA1_ro08879 848377 - 848072 - | hypothetical protein RHA1_ro08880 848849 - 848502 - | hypothetical protein RHA1_ro08881 849737 - 848886 - | IclR family transcriptional regulator RHA1_ro08882 850449 - 849889 - | hypothetical protein TERM 290 850642 - 850628 - H 81 -2.8 -5.03747 | overlap 850629 AAACTTGCCAAAAAA TGGAAT ACG ATTCCG TCATGCAGTACAGCC RHA1_ro08883 850804 - 852078 + | hypothetical protein RHA1_ro08884 852508 - 852149 - | WhiB family transcriptional regulator RHA1_ro08885 853946 - 852726 - | aminotransferase RHA1_ro08886 854200 - 853943 - | hypothetical protein RHA1_ro08887 854231 - 854683 + | AsnC family transcriptional regulator ansP 856295 - 854787 - | APC family L-asparagine permease RHA1_ro08889 856685 - 857101 + | endoribonuclease L-PSP RHA1_ro08890 858130 - 857366 - | hypothetical protein RHA1_ro08891 858461 - 858952 + | phosphoglycerate dehydrogenase RHA1_ro08892 860081 - 859725 - | hypothetical protein TERM 291 860594 - 860580 - g 73 -12.8 -3.53012 | overlap 860561 CCGGTGCTCTGGAAA CCGCGC ACC GCGCGG GAGTGCTGCACCGCG TERM 292 860640 - 860618 - g 70 -8.4 -3.83502 | overlap 860619 CACCGCGACATCAAA CCGGGCAACA TCC TGTTGACCGA GTACGGCGAGCCGCA TERM 293 861370 - 861312 - g 72 -8.7 -4.09685 | overlap 861313 861315 CGGGATTCGGGAAAA GCACGCTGGCCGCC-CAACGCCTCGCGGC CCT GCGGGGAGAAGGTGTGGCGACC-GCGTGG CTGACGATAGACAAC TERM 294 862492 - 862474 - g 78 -6 -4.64676 | overlap 862476 CGACGCCGAACAAAA TCTTTCCG CCG CGGAAACA GCACTCGACAACGCA RHA1_ro08893 860165 - 863635 + | serine-threonine protein kinase/ transcriptional regulator RHA1_ro08894 864571 - 863924 - | transposase RHA1_ro08895 865116 - 864625 - | hypothetical protein RHA1_ro08896 865156 - 865413 + | hypothetical protein RHA1_ro08897 866972 - 865569 - | hydrolase RHA1_ro08898 867924 - 867046 - | hypothetical protein RHA1_ro08899 869036 - 868530 - | hypothetical protein RHA1_ro08900 869897 - 869103 - | GntR family transcriptional regulator TERM 295 869173 - 869158 - G 70 -9 -3.85698 | GTTCGTGCCGAGAAA TCAGCG AGGA CGCTGA ACCGATCTCCGCGAA RHA1_ro08901 870320 - 870772 + | transposase RHA1_ro08902 871730 - 871146 - | transposase TERM 296 871204 - 871218 + g 91 -4.2 -5.41143 | GGCGATCGCGGTGTT CGCC AGCGCGG GGCG TTTTTTTCGGGCGTC TERM 297 871993 - 872012 + r 84 -12.2 -3.96892 | opp_overlap 871985 GAGTGAAGGTTGACA TGGGCAGA CCAG TCTGCCCA TTTCTGCTGAGGCTT RHA1_ro08903 872952 - 872176 - | hypothetical protein TERM 298 872545 - 872524 - G 70 -15.1 -2.75064 | overlap 872495 872521 CTGCCCACCGAAGCA GCCCCGCCG GCTT CGGCGAGGC GCTGGGATAGCGGAA RHA1_ro08904 873325 - 873912 + | TetR family transcriptional regulator RHA1_ro08905 873942 - 874358 + | hypothetical protein RHA1_ro08906 874361 - 874645 + | hypothetical protein TERM 299 874901 - 874926 + F 73 -12.5 -3.30203 | opp_overlap 874899 874900 ACGCTCTCGTAAACG CGGCACCGTGC GGGT GCGCGGTGACG TTAACTTATTCATCC RHA1_ro08907 875184 - 875957 + | IclR family transcriptional regulator RHA1_ro08908 876284 - 875928 - | hypothetical protein TERM 300 876192 - 876224 + g 73 -7.6 -4.1899 | CCTACGTTGCTCGAG GCTGCGCGGTTCGG GCGAA TCGACTCGCGTGGC TTTTAACTCCAATGC RHA1_ro08909 876378 - 876992 + | TetR family transcriptional regulator RHA1_ro08910 877369 - 876989 - | hypothetical protein RHA1_ro08911 878887 - 877658 - | sulfide-quinone reductase RHA1_ro08912 879259 - 878939 - | hypothetical protein RHA1_ro08913 879771 - 880301 + | hypothetical protein RHA1_ro08914 880624 - 880376 - | hypothetical protein RHA1_ro08915 880690 - 881166 + | hypothetical protein RHA1_ro08916 881841 - 883067 + | flavin reductase (NADH:flavin oxidoreductase) thcA 883586 - 885109 + | aldehyde dehydrogenase (NAD+) TERM 301 885182 - 885146 - g 100 -25.1 -3.17194 | opp_overlap 885142 AGCGCCTGAAGGCAA CCGCCGGGGCGGTGGAG CTT CTCCGCCGCCTCGGCGG TACCCACGGGGCGCT RHA1_ro08918 885109 - 885651 + | hypothetical protein TERM 302 885714 - 885765 + F 77 -12.9 -3.33696 | opp_overlap 885712 GGTCCTGACCCAACG CCGCACGGCGCGAGA-GCTGGCGGG CGGA CCC-CCGGCATCCCGAGCTGCGCGG TTCGTTGCGGGGACG TERM 303 887053 - 887036 - g 72 -3.3 -4.57073 | gap 1, overlap 887037 887038 GACGCCTCCGAAAAA GCCGCCCG CTT CGTGCG-C ACCTGCGACGCGTTC pccB2 885932 - 887572 + | propionyl-CoA carboxylase beta subunit RHA1_ro08920 887569 - 887868 + | hypothetical protein TERM 304 888305 - 888282 - g 75 -4.5 -4.59109 | gap 1, overlap 888287 CACATCGCCGAAAAA GCCAA-GGCC CCGAT GGCCGCCGGC ACCAAGGACCCCGTC TERM 305 889544 - 889530 - g 74 -11.4 -3.70751 | GAAGAAGGCCAACAA GTCGCC GAG GGCGAC CTCATCGCCGTCCTC TERM 306 889635 - 889580 - g 72 -5 -4.44277 | overlap 889598 CATGAAAATGGAAAA CCCCGTCAACGCCCACAAGGCCGGCG TCGT CACCGGCCTCGCCGTCGAACCCGGCG CCGCCATCACCCAGG TERM 307 889617 - 889598 - g 70 -12.8 -3.33261 | overlap 889580 CGTCAACGCCCACAA GGCCGGCG TCGT CACCGGCC TCGCCGTCGAACCCG RHA1_ro08921 887895 - 889676 + | biotin carboxylase TERM 308 889927 - 889950 + F 77 -5.2 -4.59109 | opp_overlap 889927 GCGGGATTACCAAAC CGAGTGCTGT CGTT GCAGCGATCG TTTTTGACGGATATC RHA1_ro08922 890018 - 890347 + | hypothetical protein TERM 309 890555 - 890541 - T 74 -10 -3.69323 | GGACGACGACCTAAA CCGCTT CTT AAGCGG GCGGGCGAGTCGAGG RHA1_ro08923 892834 - 890918 - | acetyl-CoA synthetase RHA1_ro08924 893889 - 894068 + | 4-oxalocrotonate tautomerase RHA1_ro08925 894757 - 894212 - | hypothetical protein TERM 310 894628 - 894591 - G 93 -18.7 -3.50572 | gap 1, opp_overlap 894621, overlap 894612 ACGCATCGCAGACAA CCAGTGCATGAACCC-AT GGA ATCGGGTCCATGCACTGG CCCGCAGTGGCATTT RHA1_ro08926 895455 - 894988 - | transcriptional regulator RHA1_ro08927 895771 - 896145 + | hypothetical protein TERM 311 896297 - 896320 + F 85 -8 -4.61231 | overlap 896299 CTTCTGTTGGCTGAG TGCGGCGGCG TGGG CGCCCCCGGA TTTTTGCGGGTCTCG TERM 312 896328 - 896350 + F 74 -11.3 -3.60296 | gap 1 CCCCCGGATTTTTGC GGGTCTCGGC AGGC GCCG-GACCC TTTGGAATCAGACTC RHA1_ro08928 896690 - 897886 + | malate dehydrogenase (oxaloacetate decarboxylating) RHA1_ro08929 899577 - 899326 - | hypothetical protein RHA1_ro08930 900271 - 899747 - | hypothetical protein RHA1_ro08931 900974 - 900327 - | hypothetical protein RHA1_ro08932 901678 - 900974 - | transmembrane protein RHA1_ro08933 902263 - 901730 - | hypothetical protein RHA1_ro08934 902824 - 902273 - | hypothetical protein RHA1_ro08935 903378 - 902923 - | hypothetical protein RHA1_ro08936 903892 - 903479 - | hypothetical protein RHA1_ro08937 904267 - 903911 - | hypothetical protein RHA1_ro08938 905856 - 904627 - | sulfide-quinone reductase RHA1_ro08939 906751 - 906044 - | hypothetical protein RHA1_ro08940 907687 - 907442 - | hypothetical protein RHA1_ro08941 907771 - 908301 + | hypothetical protein TERM 313 909526 - 909547 + G 95 -10.1 -4.82678 | opp_overlap 909502 GGAGATCCTCCTCGC CGGTGGCGC GCTG GCGTCACTG TTTTCCTTTTTCTAC RHA1_ro08942 908690 - 910138 + | major facilitator transporter RHA1_ro08943 910140 - 910391 + | hypothetical protein RHA1_ro08944 910790 - 911599 + | enoyl-CoA hydratase RHA1_ro08945 912103 - 913602 + | long-chain-fatty-acid--CoA ligase RHA1_ro08946 914043 - 913762 - | hypothetical protein RHA1_ro08947 914135 - 914716 + | hypothetical protein RHA1_ro08948 914981 - 915289 + | hypothetical protein RHA1_ro08949 915543 - 915361 - | thioesterase RHA1_ro08950 915747 - 915592 - | hypothetical protein RHA1_ro08951 916449 - 916027 - | transposase RHA1_ro08952 916461 - 916736 + | hypothetical protein RHA1_ro08953 916736 - 917011 + | hypothetical protein RHA1_ro08954 917064 - 917627 + | hypothetical protein TERM 314 919279 - 919296 + G 83 -8.4 -4.56597 | opp_overlap 919265 919264 CGCTCTCACGAACTT CGCGAG ACCCTC CTCGCG TTTTTGGAGGCGAAC RHA1_ro08955 918205 - 919482 + | hypothetical protein RHA1_ro08956 919705 - 920379 + | hypothetical protein RHA1_ro08957 922263 - 920605 - | short-chain dehydrogenase TERM 315 921076 - 921096 + g 70 -8.3 -3.91897 | GATCAGTTCGTGTTG TTCGAGGGT CAT GTCCTCGAA TTTGTCGATGAACGC TERM 316 922378 - 922347 - H 93 -19 -2.90797 | opp_overlap 922352, overlap 922340 922352 922364 CCGACACACATTATA TGGAACTACTTCCA AGAT TGGAAGTAGTTCCA ACTATGGAAGTGGTT RHA1_ro08958 922418 - 923041 + | TetR family transcriptional regulator RHA1_ro08959 923486 - 923109 - | hypothetical protein RHA1_ro08960 924269 - 923487 - | hypothetical protein RHA1_ro08961 924865 - 924347 - | hypothetical protein RHA1_ro08962 925361 - 924849 - | oxidoreductase RHA1_ro08963 926683 - 925490 - | flavin-dependent oxidoreductase RHA1_ro08964 927142 - 926717 - | hypothetical protein adh2 928209 - 927181 - | alcohol dehydrogenase RHA1_ro08966 928402 - 929274 + | LysR family transcriptional regulator TERM 317 930130 - 930120 - g 72 -6.8 -4.36914 | GTTCTCGTGACAAAA CTCG TAT CGAG CCAGGATCGGATCAC TERM 318 930773 - 930745 - g 78 -5.9 -4.59342 | overlap 930747 TCCACGACAAACAAA CACTGCGTGACTA TGT TCGCCGCGCAGTA GGAACCTGGTTCCAT RHA1_ro08967 929463 - 930980 + | dehydrogenase RHA1_ro08968 931048 - 931335 + | hypothetical protein dapA5 931372 - 932292 + | dihydrodipicolinate synthase RHA1_ro08970 932772 - 932416 - | hypothetical protein RHA1_ro08971 932788 - 934452 + | 4-coumarate--CoA ligase RHA1_ro08972 934731 - 934486 - | hypothetical protein RHA1_ro08973 934831 - 936387 + | TnpB family transposase RHA1_ro08974 938168 - 936975 - | TnpA family transposase RHA1_ro08975 938964 - 938494 - | aldolase RHA1_ro08976 939649 - 939137 - | sugar kinase RHA1_ro08977 939874 - 940701 + | carveol dehydrogenase RHA1_ro08978 940763 - 941122 + | hypothetical protein RHA1_ro08979 941878 - 941429 - | hypothetical protein TERM 319 941482 - 941494 + g 72 -3.4 -4.62336 | overlap 941476 CGATGTTTCCCAACG TTCC CGTAT GGAA TTTTTGGCGTCGGGT RHA1_ro08980 942418 - 942867 + | hypothetical protein RHA1_ro08981 942931 - 943350 + | hypothetical protein RHA1_ro08982 943926 - 944861 + | 5-valerolactone hydrolase RHA1_ro08983 944892 - 945797 + | short-chained dehydrogenase RHA1_ro08984 945838 - 947070 + | cytochrome P450 CYP256 RHA1_ro08985 947079 - 947399 + | ferredoxin TERM 320 948509 - 948541 + G 70 -4.2 -4.41353 | gap 2, overlap 948510 ACGACGATGTGGTCC TGCGGACCGATCCG ATACGTC CGGATCG--CCGCG TTTTCATCTATCTGC RHA1_ro08986 947386 - 948711 + | ferredoxin reductase RHA1_ro08987 949708 - 948719 - | MarR family transcriptional regulator RHA1_ro08988 950206 - 949775 - | hypothetical protein RHA1_ro08989 950353 - 951600 + | hypothetical protein RHA1_ro08990 953674 - 954426 + | ABC branched-chain amino acid transporter, permease component RHA1_ro08991 954423 - 955157 + | ABC branched-chain amino acid transporter, ATPase component RHA1_ro08992 955505 - 956431 + | hypothetical protein TERM 321 956482 - 956444 - T 93 -18.1 -3.57792 | opp_overlap 956444 956446 956451, overlap 956446 TGATCGAGCTTTAAA CAGTGAGGCCGCCCCGG ATTTG CCGGGGCGGCATCGCTA TTCGTGCGGGTTGCC TERM 322 956444 - 956482 + T 89 -18.1 -3.16742 | opp_overlap 956444 956446, overlap 956446 956451 TGATCGAGCTTTAAA CAGTGAGGCCGCCCCGG ATTTG CCGGGGCGGCATCGCTA TTCGTGCGGGTTGCC TERM 323 956446 - 956480 + T 100 -20.7 -3.14527 | opp_overlap 956444 956446, overlap 956444 956451 ATCGAGCTTTAAACA GTGAGGCCGCCCCGG ATTTG CCGGGGCGGCATCGC TATTCGTGCGGGTTG TERM 324 956480 - 956446 - T 93 -18.5 -3.36694 | opp_overlap 956446 956444 956451, overlap 956444 ATCGAGCTTTAAACA GTGAGGCCGCCCCGG ATTTG CCGGGGCGGCATCGC TATTCGTGCGGGTTG RHA1_ro08993 957097 - 956714 - | hypothetical protein TERM 325 957011 - 956990 - G 76 -2.2 -4.77036 | gap 1, opp_overlap 957010, overlap 956992 GTCGAGGACCAAAAA CACGTCGCC GTTCT GGCGAAG-G AGGGTCTCCTGTGCT RHA1_ro08995 957996 - 957394 - | dehydrogenase RHA1_ro08994 957101 - 957448 + | hypothetical protein TERM 326 957619 - 957573 - GT 71 -8 -4.08945 | gap 1 ACGATTCGTCGAAAA CGACGCCGGCATCGACCAGCC AATTGA AG-TGGTCGACACTGCCGTCG CAGTAGACATCGATC RHA1_ro08996 959297 - 958053 - | flavin reductase RHA1_ro08997 959471 - 960079 + | TetR family transcriptional regulator RHA1_ro08998 961142 - 960231 - | monooxygenase, C-terminal RHA1_ro08999 961867 - 961244 - | monooxygenase, N-terminal RHA1_ro09000 962133 - 961864 - | hypothetical protein TERM 327 962181 - 962215 + r 72 -12.9 -3.05596 | opp_overlap 962173 962210, overlap 962175 962176 GTAACGATCTCGCGC CGCGCGTTGTGCTGA TGCAC TCAGCACAACGCACC TTCGCTCGAGGCGTA RHA1_ro09001 962665 - 962276 - | steroid delta-isomerase kshB 962866 - 963951 + | oxygenase reductase KshB TERM 328 964154 - 964168 + G 73 -10 -3.92542 | CCCGCCGACGCGTTT TGCCAG GGG CTGGCA TTGTTTGGGACTCGC kshA 964086 - 965249 + | terminal oxygenase KshA TERM 329 965952 - 965928 - g 72 -4.2 -4.57341 | overlap 965929 AACGGTCGCGAAAAA CTACGGCGTC ACTGA GACGCTGTAC AAGATGCCCTGGTCG RHA1_ro09004 965272 - 966453 + | hydroxylase RHA1_ro09005 966499 - 967425 + | extradiol ring-cleavage dioxygenase TERM 330 967486 - 967438 - T 81 -15.9 -2.91912 | opp_overlap 967435 967439 967441, overlap 967441 TGACCGACCGAGAGA CGAGCCCTTGCCGGGGCCCGATG CGA CACCAAACTCCGGCGAGGGCTCT GTCGTGTTCAGCTCA TERM 331 967439 - 967485 + T 79 -15 -2.92026 | opp_overlap 967438 967441, overlap 967435 967441 GACCGACCGAGAGAC GAGCCCTTGCCGGGGCCCGATG CGA CACCAAACTCCGGCGAGGGCTC TGTCGTGTTCAGCTC TERM 332 967483 - 967441 - T 78 -16.2 -2.7035 | opp_overlap 967439 967435 967441, overlap 967438 CCGACCGAGAGACGA GCCCTTGCCGGGGCCCGATG CGA CACCAAACTCCGGCGAGGGC TCTGTCGTGTTCAGC RHA1_ro09006 967891 - 967499 - | hypothetical protein RHA1_ro09007 968092 - 969012 + | short-chained dehydrogenase RHA1_ro09008 969017 - 969523 + | hypothetical protein RHA1_ro09009 970603 - 969512 - | transposase TERM 333 971356 - 971396 + G 72 -14.8 -2.87132 | ACTGCGAATGGTTCT GGGATCAGTACGTGCC-GCG TCG CGCCGGC-CGTGCCGATCCC TATGTGAGCCCGGCA RHA1_ro09010 970734 - 971675 + | lipase/esterase RHA1_ro09011 972296 - 971634 - | hypothetical protein RHA1_ro09012 972334 - 972879 + | flavoprotein oxidoreductase RHA1_ro09013 972884 - 973156 + | hypothetical protein RHA1_ro09014 973198 - 974100 + | alpha/beta-fold C-C bond hydrolase RHA1_ro09015 975024 - 974359 - | hypothetical protein RHA1_ro09016 975364 - 975017 - | hypothetical protein bphR 975519 - 976205 + | PadR family transcriptional regulator bphG1 976230 - 977177 + | acetaldehyde dehydrogenase bphF1 977174 - 978238 + | 4-hydroxy-2-ketovalerate aldolase RHA1_ro09020 978510 - 978253 - | hypothetical protein bphE1 978547 - 979353 + | 2-hydroxypenta-2,4-dienoate hydratase RHA1_ro09022 980529 - 979765 - | IclR family transcriptional regulator RHA1_ro09023 981142 - 982878 + | 3-ketosteroid-delta-1-dehydrogenase RHA1_ro09024 983573 - 983848 + | hypothetical protein RHA1_ro09025 984183 - 984776 + | hypothetical protein RHA1_ro09026 986268 - 985243 - | lipase/esterase RHA1_ro09027 986978 - 986304 - | GntR family transcriptional regulator RHA1_ro09028 988251 - 986998 - | CoA-transferase RHA1_ro09029 989363 - 988248 - | acyl-CoA dehydrogenase RHA1_ro09030 990520 - 989360 - | acyl-CoA dehydrogenase TERM 334 989471 - 989500 + g 91 -21.5 -3.05816 | gap 1 GAGCAGGCGCGCGAA GGGGTCG-CCGCCG TCA CGGCGGGCGACCCC TTCGCTCGACGATCG RHA1_ro09031 991386 - 990517 - | enoyl-CoA hydratase RHA1_ro09032 991455 - 992213 + | short-chained dehydrogenase RHA1_ro09033 993016 - 992339 - | hypothetical protein TERM 335 992789 - 992829 + g 100 -23.4 -3.31263 | gap 1, opp_overlap 992785 GTATTGACATAGTCT CCCGGACCGCGGTGCTGCG TCCT CGC-GTACCGCGGTCTGGG TTATCAGCGTCCGGT TERM 336 992885 - 992901 + g 70 -15.1 -2.72344 | GGGCGGCCGCGGAGT CCGCCGC CTC GCGGCGG TCGTTCCCCCTGCCG RHA1_ro09034 993848 - 993048 - | IclR family transcriptional regulator TERM 337 993813 - 993838 + g 70 -8.3 -3.8211 | gap 1, opp_overlap 993802, overlap 993816 TACACGCTCGACTAC CG-ACACCGGTG AGT CGTCGGTGTGCG TTGTTCTCACTCAAC RHA1_ro09035 994459 - 996084 + | monooxygenase RHA1_ro09036 996158 - 997120 + | lipase/esterase TERM 338 997365 - 997328 - g 82 -20.5 -2.53876 | overlap 997312 CGTCACCGCAATCGA GGGCTGCGGGGACCGCG CCGT CGCGATCCCCGCCGACC TCGAGGACCGCCACC RHA1_ro09037 997161 - 997790 + | short-chained dehydrogenase RHA1_ro09038 997790 - 998674 + | short-chained dehydrogenase RHA1_ro09039 998671 - 1000662 + | monooxygenase kstD 1000659 - 1002350 + | 3-ketosteroid-delta-1-dehydrogenase RHA1_ro09041 1002544 - 1002831 + | hypothetical protein RHA1_ro09042 1003791 - 1004657 + | dehydrogenase TERM 339 1004815 - 1004771 - T 87 -18.6 -2.78018 | opp_overlap 1004772 1004773, overlap 1004768 ACCTGGTAGTAACGA TCCGGCGATAGCCGACGCAC AGTGG ACGCGTCGGCTATCGCCGCT TTTCGTGCTACGCGG TERM 340 1004772 - 1004814 + T 100 -20.7 -4.30576 | opp_overlap 1004771 1004768, overlap 1004773 CCTGGTAGTAACGAT CCGGCGATAGCCGACGC ACAGTGGAC GCGTCGGCTATCGCCGC TTTTCGTGCTACGCG TERM 341 1004773 - 1004813 + T 100 -24.2 -3.18024 | opp_overlap 1004771 1004768, overlap 1004772 CTGGTAGTAACGATC CGGCGATAGCCGACGC ACAGTGGAC GCGTCGGCTATCGCCG CTTTTCGTGCTACGC RHA1_ro09043 1005881 - 1004823 - | hypothetical protein RHA1_ro09044 1006961 - 1005957 - | ABC peptide transporter, ATP-binding protein RHA1_ro09045 1008083 - 1006962 - | ABC peptide transporter, ATP-binding component RHA1_ro09046 1009018 - 1008080 - | ABC peptide transporter, permease component RHA1_ro09047 1009962 - 1009015 - | ABC peptide transporter, permease component TERM 342 1009906 - 1009891 - G 70 -9 -3.8591 | CTCCAGAAGGAAGAA GGTCAG GATG CTGACC AGAACCAGCACTGCG RHA1_ro09048 1011439 - 1010018 - | peptide ABC transporter substrate-binding component TERM 343 1011555 - 1011517 - R 74 -10.3 -3.81 | gap 1, opp_overlap 1011517 1011516, overlap 1011514 1011523 1011524 ACGAGGTGAGAAGAA GCGAAACTGCGGCAGCTG CGCT CAG-TGCGGCAGCTGCGC GGATACGGATTCTCA RHA1_ro09049 1013316 - 1012216 - | hypothetical protein RHA1_ro09050 1013800 - 1013360 - | hypothetical protein RHA1_ro09051 1014180 - 1014674 + | hypothetical protein TERM 344 1014806 - 1014834 + T 71 -12.3 -3.20723 | GCAGGCCCTGGCTTC CGAAGCGGGCGGG TTC CGCGCTCGCGTCG TTAGCTTCGTGGCAG RHA1_ro09052 1015296 - 1014835 - | hypothetical protein RHA1_ro09053 1015724 - 1015464 - | hypothetical protein RHA1_ro09054 1015827 - 1016225 + | hypothetical protein RHA1_ro09055 1016743 - 1016222 - | hydrolase RHA1_ro09056 1017065 - 1016754 - | ethyl tert-butyl ether degradation EthD RHA1_ro09057 1018321 - 1017077 - | monooxygenase RHA1_ro09058 1019443 - 1018406 - | AraC family transcriptional regulator RHA1_ro09059 1020683 - 1019460 - | monooxygenase RHA1_ro09060 1020794 - 1021474 + | IclR family transcriptional regulator RHA1_ro09061 1021788 - 1022057 + | hypothetical protein trxB 1023362 - 1022379 - | thioredoxin-disulfide reductase RHA1_ro09063 1023983 - 1023414 - | hypothetical protein RHA1_ro09064 1025167 - 1024079 - | NAD(P)H-dependent reductase TERM 345 1025268 - 1025232 - R 87 -15.2 -3.64703 | gap 1, opp_overlap 1025234 GCGGGCGCAGGTAAA GACGGCC-TAGGGCCAC GGTG GTGTCCCCAAGGCCGTC TTCGAGCCTGAACCC RHA1_ro09065 1025675 - 1025298 - | carboxymuconolactone decarboxylase trxA 1026101 - 1025763 - | thioredoxin RHA1_ro09067 1027002 - 1026124 - | glucose dehydrogenase RHA1_ro09068 1027110 - 1027706 + | TetR family transcriptional regulator RHA1_ro09069 1027970 - 1028893 + | hypothetical protein RHA1_ro09070 1029140 - 1028955 - | hypothetical protein RHA1_ro09071 1029967 - 1029239 - | transposase, C-terminal RHA1_ro09072 1030977 - 1029970 - | transposase, N-terminal RHA1_ro09073 1031237 - 1030974 - | hypothetical protein RHA1_ro09074 1031883 - 1031407 - | transposase RHA1_ro09075 1032431 - 1032057 - | hypothetical protein TERM 346 1032412 - 1032447 + g 83 -14.8 -3.60792 | opp_overlap 1032397 1032414, overlap 1032397 1032413 TTCCGGGGTCGGGAT AAGTCGAGTAATCCCG ACAT CGGGATTACTCGACGA TTTCGCGCTTCGGCC TERM 347 1032413 - 1032446 + g 81 -18.3 -2.76261 | opp_overlap 1032397 1032414, overlap 1032397 1032412 TCCGGGGTCGGGATA AGTCGAGTAATCCCG ACAT CGGGATTACTCGACG ATTTCGCGCTTCGGC TERM 348 1032445 - 1032414 - G 95 -21.8 -3.28712 | opp_overlap 1032397 1032413 1032412, overlap 1032397 CCGGGGTCGGGATAA GTCGAGTAATCCCG ACAT CGGGATTACTCGAC GATTTCGCGCTTCGG RHA1_ro09076 1032468 - 1032776 + | hypothetical protein RHA1_ro09077 1033667 - 1033960 + | hypothetical protein RHA1_ro09078 1035002 - 1034220 - | hypothetical protein RHA1_ro09079 1035910 - 1035065 - | short-chained dehydrogenase RHA1_ro09080 1037654 - 1036818 - | short-chain dehydrogenase RHA1_ro09081 1038726 - 1037725 - | ABC sugar transporter, permease component RHA1_ro09082 1040258 - 1038723 - | ABC sugar transporter, ATP-binding component RHA1_ro09083 1041483 - 1040305 - | sugar ABC transporter periplasmic protein RHA1_ro09084 1042825 - 1041821 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase RHA1_ro09085 1044085 - 1042916 - | limonene monooxygenase RHA1_ro09086 1044631 - 1044158 - | hypothetical protein RHA1_ro09087 1044807 - 1045352 + | flavin reductase RHA1_ro09088 1045365 - 1045655 + | hypothetical protein RHA1_ro09089 1047533 - 1045959 - | permease RHA1_ro09090 1048949 - 1047615 - | fumarate reductase RHA1_ro09091 1049004 - 1049279 + | hypothetical protein TERM 349 1049848 - 1049861 + GT 79 -2.4 -4.91873 | overlap 1049856 GCCGTCCTCCCTTGC CGTT CACCTC AACG TTTTTCGTTGCTCTG RHA1_ro09093 1050282 - 1049923 - | hypothetical protein RHA1_ro09092 1049276 - 1049977 + | hypothetical protein RHA1_ro09094 1050672 - 1051694 + | lipase RHA1_ro09095 1051928 - 1053094 + | hypothetical protein TERM 350 1053690 - 1053669 - g 82 -15.9 -3.28712 | opp_overlap 1053667 1053671 CCGCGTTCGGTAGAA GCTGCGGTG CGGG CACCGCAGC GGATTCTGGATCTGT RHA1_ro09096 1053402 - 1053770 + | hypothetical protein RHA1_ro09098 1054364 - 1054074 - | hypothetical protein RHA1_ro09099 1054716 - 1054378 - | WhiB family transcriptional regulator RHA1_ro09100 1055790 - 1055080 - | hypothetical protein TERM 351 1055513 - 1055571 + g 82 -16.4 -3.32498 | overlap 1055514 1055535 TCCCGTAATGCCCTG TTCGGCGGCCTCGAGGGCCGCGCGTCCG CGG CGTTCGCGCTGCCGTCGGGACTGCCGCG TTCGTGTGTGCGCTG TERM 352 1055514 - 1055570 + g 77 -17.7 -2.59177 | overlap 1055513 1055535 CCCGTAATGCCCTGT TCGGCGGCCTCGAGGGCCGCGCGTCCG CGG CGTTCGCGCTGCCGTCGGGACTGCCGC GTTCGTGTGTGCGCT RHA1_ro09101 1056457 - 1055909 - | hypothetical protein RHA1_ro09102 1056493 - 1056738 + | hypothetical protein RHA1_ro09103 1056776 - 1057075 + | hypothetical protein RHA1_ro09104 1057689 - 1057156 - | hypothetical protein RHA1_ro09105 1058299 - 1058619 + | hypothetical protein RHA1_ro09106 1059135 - 1060421 + | hypothetical protein RHA1_ro09107 1060790 - 1061524 + | hypothetical protein RHA1_ro09108 1061529 - 1061888 + | hypothetical protein RHA1_ro09109 1062576 - 1061839 - | hypothetical protein RHA1_ro09110 1063101 - 1064594 + | hypothetical protein RHA1_ro09111 1065632 - 1064811 - | hypothetical protein RHA1_ro09112 1067085 - 1065913 - | hypothetical protein RHA1_ro09113 1070513 - 1067082 - | hypothetical protein TERM 353 1068451 - 1068418 - G 85 -16.8 -3.59979 | TCGGTCCAGTTCAAA TCGAGCACCGCTTC CCATGT GACGCGGTGCTCGA CCATCGTCGAGCGCT TERM 354 1069950 - 1069924 - G 70 -8.7 -3.93288 | gap 1, overlap 1069919 1069925 TTCGACCCAACGAAA GTGGCTTCCAGC TTCC GCTGGTAGCC-C TGCTGCCCGAGACCC RHA1_ro09114 1071288 - 1070500 - | hypothetical protein RHA1_ro09115 1072814 - 1071285 - | hypothetical protein RHA1_ro09116 1072940 - 1073404 + | hypothetical protein RHA1_ro09117 1073800 - 1074579 + | hypothetical protein RHA1_ro09118 1075742 - 1074888 - | hypothetical protein RHA1_ro09119 1076824 - 1075739 - | hypothetical protein RHA1_ro09120 1077061 - 1077528 + | hypothetical protein RHA1_ro09121 1077542 - 1078141 + | hypothetical protein RHA1_ro09122 1078199 - 1079179 + | hypothetical protein RHA1_ro09123 1080246 - 1079197 - | hypothetical protein TERM 355 1079606 - 1079591 - G 89 -6.8 -5.12707 | overlap 1079593 TGAAAGGCCAAAAAA TCCCCG ATCC CGGGAA AAGCACGTAATAGGA RHA1_ro09124 1082016 - 1080853 - | hypothetical protein TERM 356 1081289 - 1081309 + g 86 -2.6 -5.11937 | gap 1, overlap 1081288 TTTCTCGATCCACGC TCT-GCGAT GAGC GTCGCGAGA TTTTTTAGGATTCTT RHA1_ro09125 1083455 - 1082091 - | hypothetical protein RHA1_ro09126 1085112 - 1083475 - | subtilase family serine proteinase TERM 357 1085177 - 1085196 + Gr 77 -3.5 -4.81212 | CGGCTCCCGCGCCTG CACACCG AAAGAC CGGTCTG TTTTATTGTCCTCCC RHA1_ro09127 1085112 - 1085555 + | hypothetical protein RHA1_ro09128 1086225 - 1085839 - | hypothetical protein RHA1_ro09129 1087443 - 1086589 - | phage integrase family site specific recombinase TERM 358 1087747 - 1087737 - g 83 -8.2 -4.65895 | CTGGTCATCGAAAAA CCGC GGC GCGG ACGGAGCTGTTCGAG RHA1_ro09130 1087460 - 1087765 + | hypothetical protein RHA1_ro09131 1088813 - 1088310 - | hypothetical protein RHA1_ro09132 1089267 - 1089392 + | hypothetical protein RHA1_ro09133 1090000 - 1089389 - | pterin-4a-carbinolamine dehydratase RHA1_ro09134 1092931 - 1091123 - | metallopeptidase RHA1_ro09135 1093343 - 1092975 - | transposase RHA1_ro09136 1093348 - 1093770 + | hypothetical protein TERM 359 1093787 - 1093773 - T 81 -12.8 -3.62096 | TCCTACGAGGTGAAA CCGGGG ATA CCCCGG GCCTGGCCGATGGTG RHA1_ro09137 1095562 - 1093760 - | hypothetical protein TERM 360 1095823 - 1095781 - R 95 -12.5 -4.38712 | opp_overlap 1095787 1095787 1095789, overlap 1095787 1095788 GTTAGGGTTAGAAAA GGGAAAGGCGCTGCCCGGC CGTCT GCCGGGCATCGCTGCGCCC TGCGCTGCTGGGCAG TERM 361 1095817 - 1095787 - R 93 -13.9 -3.96705 | opp_overlap 1095787 1095787 1095789, overlap 1095781 1095788 GTTAGAAAAGGGAAA GGCGCTGCCCGGC CGTCT GCCGGGCATCGCT GCGCCCTGCGCTGCT TERM 362 1095787 - 1095843 + r 75 -12.3 -3.45023 | gap 3, opp_overlap 1095787 1095781 1095788, overlap 1095787 1095789 GTTAGAAAAGGGAAA GG-CGCTGCCCGGCCGTCTGCCGGGC ATCGCTGC GCCCTGC-G-CTGCTGGGCAGCGTCC TTATCGTCATCGTGG TERM 363 1095787 - 1095842 + r 75 -14.7 -2.66692 | gap 2, opp_overlap 1095787 1095781 1095788, overlap 1095787 1095789 GTTAGAAAAGGGAAA GGCGCTGCCCGGCCGTCTGCCGGGC ATCGCTGC GCCCTGC-G-CTGCTGGGCAGCGTC CTTATCGTCATCGTG TERM 364 1095816 - 1095788 - R 88 -17.4 -2.973 | opp_overlap 1095787 1095787 1095789, overlap 1095787 1095781 TTAGAAAAGGGAAAG GCGCTGCCCGGC CGTCT GCCGGGCATCGC TGCGCCCTGCGCTGC TERM 365 1095789 - 1095840 + r 73 -13.7 -2.87243 | gap 2, opp_overlap 1095788 1095787 1095781, overlap 1095787 1095787 TAGAAAAGGGAAAGG CGCTGCCCGGCCGTCTGCCGGGC ATCGCTGC GCCCTGC-G-CTGCTGGGCAGCG TCCTTATCGTCATCG RHA1_ro09138 1096128 - 1095850 - | hypothetical protein TERM 366 1096151 - 1096167 + H 85 -12.3 -4.14243 | GCGATGCGTATCTGA GCCGTAC TGA GTACGGC TTTTGGGGTAGGCTG RHA1_ro09139 1096215 - 1096430 + | hypothetical protein RHA1_ro09140 1096427 - 1096774 + | hypothetical protein RHA1_ro09141 1096920 - 1098986 + | hypothetical protein RHA1_ro09142 1099000 - 1100259 + | hypothetical protein RHA1_ro09143 1101550 - 1100594 - | hypothetical protein RHA1_ro09144 1102131 - 1101682 - | hypothetical protein TERM 367 1102006 - 1102036 + g 85 -16.1 -3.61398 | gap 1 CCCGACGGCGGTGAC CGCGGCGCGCGCCG ACAC CGGCGAGC-CCGCG TTGTTCGCACCGGAG RHA1_ro09145 1102872 - 1102630 - | hypothetical protein TERM 368 1103360 - 1103377 + G 72 -9.1 -4.07568 | opp_overlap 1103353 GGCAAGGACAGGCCA GACCTGC AGGC GCGGGTC TTTTCCGGCGAGCGG TERM 369 1105762 - 1105732 - g 79 -15.4 -3.26471 | CGAGGGTGACATCAA GGCATGGGTGCGCG ACC CGGGCACCTATGCC CGCATCATGGGCCTC TERM 370 1106061 - 1106075 + G 76 -7.1 -4.25104 | GATTTGGTGTGCTGC TCCCG CGCCT CGGGA TTTTCGTGAGAACGC RHA1_ro09146 1102934 - 1109926 + | hypothetical protein TERM 371 1111887 - 1111864 - g 75 -8.8 -4.1899 | gap 1, opp_overlap 1111884 CCAGCGCACTCAAAA CGGC-CGGCTT CGA ACGCCGCGCCG ACGACTGGCTGTTGC RHA1_ro09147 1109937 - 1113236 + | insecticidal toxin protein, C-terminal TERM 372 1117633 - 1117592 - g 72 -8.5 -4.04149 | gap 1, overlap 1117593 GAAGTACAGCACAAA GCTCAGGCCGAGCGAGGGGC GGT GCCCGGCGCCGGGCCGGA-C GTCGTCCCGCGCTGG RHA1_ro09148 1113374 - 1121320 + | hypothetical protein RHA1_ro09149 1121559 - 1121308 - | hypothetical protein RHA1_ro09150 1121548 - 1122003 + | hypothetical protein SEQUENCE gi|111026068|ref|NC_008270.1| Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence (length 442536) RHA1_ro10001 1207 - 233 - | hypothetical protein TERM 1 1377 - 1331 - R 100 -31.1 -3.07575 | overlap 1322 AAAACCCGCATTGAA CTGCGCCTATGTCCCCGGCAC ACCCG GTGCCGGGGACATAGGCGCAC ACAGCTGTGAGCGGT TERM 2 1423 - 1381 - R 100 -21.4 -2.8937 | ACATAGGCGCACACA GCTGTGAGCGGTCGCCGG TCGGGCG CCGGCCACCGCTCACAAC AGCACTGGACTACTG RHA1_ro10002 2017 - 1433 - | hypothetical protein RHA1_ro10003 2409 - 2014 - | hypothetical protein TERM 3 2553 - 2527 - H 100 -23.8 -4.28254 | CCGGAACAGCGAAAA CGTCCCCGGCAC CCG GTGCCGGGGACG CCGGCAGATACTGAC RHA1_ro10004 2542 - 2835 + | hypothetical protein RHA1_ro10005 3976 - 2972 - | hypothetical protein TERM 4 4086 - 4114 + r 100 -21.8 -4.12532 | opp_overlap 4086 CTTGAACAGTGAAAA CGTCCCCGGCAC ACCCG GTGCCGGGGACG TTTGTGTCTAGCGAC TERM 5 4114 - 4086 - R 100 -21.8 -4.28254 | opp_overlap 4086 CTTGAACAGTGAAAA CGTCCCCGGCAC ACCCG GTGCCGGGGACG TTTGTGTCTAGCGAC RHA1_ro10006 4755 - 4159 - | hypothetical protein RHA1_ro10007 5515 - 4883 - | hypothetical protein RHA1_ro10008 6249 - 5518 - | transcriptional regulator RHA1_ro10009 11627 - 6249 - | transcriptional regulator TERM 6 8304 - 8331 + g 73 -7.7 -4.14392 | gap 1 GAGTAACTTGTGTAG CCGCAGTGCAAC CATGC GCTGC-CTGCGG TTTTCGCACTTGACC RHA1_ro10010 12076 - 11819 - | hypothetical protein RHA1_ro10011 12473 - 12183 - | hypothetical protein TERM 7 12414 - 12387 - G 100 -21.4 -4.25074 | GATCAAACGGTAAAA CCCACTCCCCAC GGCG GTGGGGAGTGGG GTGGGGAGTGGGGTG RHA1_ro10012 13287 - 12547 - | hypothetical protein TERM 8 13088 - 13108 + g 70 -12.5 -3.28712 | GCCTGAGCTTGTGGC GGCTCCTGC GCT GCAGGCGCC TTCTCGACAGGCCGA RHA1_ro10013 14252 - 13284 - | chromosome partitioning protein ParA RHA1_ro10014 15834 - 15166 - | hypothetical protein RHA1_ro10015 15939 - 16295 + | hypothetical protein RHA1_ro10016 16558 - 16950 + | hypothetical protein RHA1_ro10017 17464 - 17192 - | hypothetical protein RHA1_ro10018 17939 - 18439 + | hypothetical protein RHA1_ro10019 21077 - 19065 - | hypothetical protein RHA1_ro10020 21357 - 21094 - | hypothetical protein RHA1_ro10021 22199 - 21357 - | hypothetical protein RHA1_ro10022 22440 - 22799 + | hypothetical protein RHA1_ro10023 22796 - 24004 + | hypothetical protein TERM 9 24112 - 24134 + G 83 -5.4 -4.95167 | overlap 24112 24115 CGGCAAGCTGCTCCT CCAGTCGGCC GCC GGCTGCCTCG TTTTGTTCTTCCTTC RHA1_ro10024 24011 - 24337 + | hypothetical protein RHA1_ro10025 24496 - 25116 + | hypothetical protein RHA1_ro10026 25131 - 27641 + | hypothetical protein RHA1_ro10027 27638 - 29917 + | hypothetical protein RHA1_ro10028 29917 - 31563 + | peptidase TERM 10 31779 - 31766 - f 91 -9.5 -4.81551 | opp_overlap 31766 31764 CAGCGACACGAAAAA CCCCC TGGC GGGGG TGTTTTCGCGAGGAG TERM 11 34908 - 34892 - g 71 -11.5 -3.61715 | opp_overlap 34893 GACGGCCGTCAAGAA CGGCGCC ACT GACGCCG CCTCGTTCCTCGATC RHA1_ro10029 32961 - 35321 + | DNA translocase RHA1_ro10030 36382 - 35453 - | hypothetical protein TERM 12 36809 - 36867 + r 75 -14.6 -2.7094 | gap 3, overlap 36811 GTGACATGATGATCG ATGGGGTGCCCGGCATGC-CGGGCCG-AC GAGG GTGCGGCCCGCGCGTGCC-GGCGCCCAGC CTTATCTGGGTCCAC TERM 13 36811 - 36868 + r 78 -13.5 -3.51924 | gap 4, overlap 36809 GACATGATGATCGAT GG-GGTGC-CCGGCATGC-CGGGCCG-AC GAGG GTGCGGCCCGCGCGTGCCGGCGCCCAGCC TTATCTGGGTCCACG RHA1_ro10031 38101 - 37061 - | transposase RHA1_ro10032 38771 - 38412 - | hypothetical protein RHA1_ro10033 39360 - 39731 + | hypothetical protein RHA1_ro10034 39721 - 39903 + | hypothetical protein TERM 14 39951 - 39921 - f 100 -24.8 -3.61398 | opp_overlap 39921 TGCCTGCGTGAAGAA TCGCCCCCGCCCTC AAG GAGAGCGGGGGCGA TTCGATTAGGTCTTC TERM 15 39921 - 39951 + F 100 -22.6 -3.20878 | opp_overlap 39921 TGCCTGCGTGAAGAA TCGCCCCCGCCCTC AAG GAGAGCGGGGGCGA TTCGATTAGGTCTTC RHA1_ro10035 40163 - 40522 + | hypothetical protein RHA1_ro10036 41148 - 40546 - | repressor protein RHA1_ro10037 41147 - 42685 + | hypothetical protein RHA1_ro10038 42754 - 43086 + | hypothetical protein TERM 16 43102 - 43116 + F 74 -11.4 -3.60792 | CCCCGGTCGTGCACG CTCCGC AGT GCGGAG TTTGGCAATTACCAC RHA1_ro10039 43312 - 43821 + | hypothetical protein RHA1_ro10040 43896 - 44684 + | 3-oxoadipate enol-lactone hydrolase RHA1_ro10041 45468 - 44686 - | DNA-binding protein RHA1_ro10042 45696 - 46262 + | hypothetical protein RHA1_ro10043 46274 - 46981 + | hypothetical protein RHA1_ro10044 46988 - 47806 + | hypothetical protein RHA1_ro10045 47803 - 49449 + | type II/IV secretion system protein RHA1_ro10046 49449 - 50324 + | hypothetical protein RHA1_ro10047 50321 - 51220 + | hypothetical protein RHA1_ro10048 51233 - 51604 + | hypothetical protein RHA1_ro10049 51795 - 52211 + | hypothetical protein RHA1_ro10050 52208 - 52660 + | hypothetical protein RHA1_ro10051 52657 - 53118 + | hypothetical protein TERM 17 53833 - 53854 + G 74 -15.9 -2.68532 | opp_overlap 53814 53813, overlap 53825 53824 ACACCCTGTGGGATA TCGCCGAGC GAGA GCTCGGCGA TCCTCTGCGTTTCAC RHA1_ro10052 53115 - 56258 + | hypothetical protein RHA1_ro10053 56255 - 56815 + | hypothetical protein RHA1_ro10054 56827 - 57465 + | hypothetical protein RHA1_ro10055 57479 - 58429 + | hypothetical protein RHA1_ro10056 59051 - 58461 - | hypothetical protein TERM 18 58793 - 58849 + g 70 -8.6 -3.91434 | gap 2, opp_overlap 58803 58806 TGGCGTGGTTGGACG CTTGGACGAAGCATCGGCCGGCGGCTGC GAT GGAGCCGCCGG-CGATTCC-CGCGCAGG TTTGTCCGATAATTT TERM 19 58840 - 58803 - G 80 -16.3 -3.14564 | gap 1, opp_overlap 58793, overlap 58806 GGACGCTTGGACGAA GCATCGGCCGGCGGCTGC GAT GGAGCCGCCGG-CGATTC CCGCGCAGGTTTGTC TERM 20 58837 - 58806 - G 74 -16.6 -2.77899 | gap 1, opp_overlap 58793, overlap 58803 CGCTTGGACGAAGCA TCGGCCGGCGGCTGC GAT GGAGCCGCCGG-CGA TTCCCGCGCAGGTTT TERM 21 58918 - 58933 + g 78 -10.4 -4.18018 | overlap 58931 CAGTTCTCCGGGTCG GCGTCG ATGA CGACGC TTTTCGCTCCAGCGG RHA1_ro10057 59682 - 59152 - | hypothetical protein RHA1_ro10058 59910 - 60773 + | prepilin signal peptidase RHA1_ro10059 60844 - 61179 + | hypothetical protein RHA1_ro10060 63226 - 61214 - | hypothetical protein TERM 22 62213 - 62257 + g 91 -15 -3.83502 | opp_overlap 62212 62210 62213 TTCGTTACAGAACAT GCCGGCGGTGACCCT-CAGGCC GTG GGCCTGTAGGG-CTGTGCCGGC TTTGCTGTCCACGTG RHA1_ro10061 63462 - 64589 + | hypothetical protein RHA1_ro10062 64589 - 65476 + | hypothetical protein TERM 23 65774 - 65740 - f 100 -13.7 -5.02323 | gap 1, overlap 65760 TGAGCAGAAAGAAAA GTCGGAGGC-CACC TACAAGAT GGTGTGCCTCCGAC TCACCCGGTGCATTC RHA1_ro10063 66000 - 66947 + | hypothetical protein TERM 24 67062 - 67036 - f 76 -13.7 -3.05343 | opp_overlap 67027, overlap 67019 CCCAGACCGGCAACA GGTCGTGTCGC GACGT GCGGCACGACC GCAGAGAAGAAGGAG RHA1_ro10064 67088 - 67504 + | hypothetical protein RHA1_ro10065 67624 - 68196 + | exonuclease RHA1_ro10066 68319 - 68711 + | hypothetical protein TERM 25 69113 - 69142 + G 71 -10.7 -3.64703 | gap 1 GCGGTCCCCGGGCAT CCCGAGACGCTGGC CAC GCT-GCGTGTCGGG TTTCGGTCGGCCGCG RHA1_ro10067 68708 - 69460 + | hypothetical protein RHA1_ro10068 70469 - 69615 - | phosphoadenylyl-sulfate reductase (thioredoxin) RHA1_ro10069 70536 - 71273 + | hypothetical protein RHA1_ro10070 71270 - 71686 + | hypothetical protein RHA1_ro10071 71683 - 72552 + | hypothetical protein RHA1_ro10072 72549 - 73274 + | hypothetical protein RHA1_ro10073 73923 - 73300 - | hypothetical protein RHA1_ro10074 74395 - 74664 + | WhiB family transcriptional regulator RHA1_ro10075 74661 - 74939 + | hypothetical protein TERM 26 75072 - 75097 + F 89 -18.3 -3.14132 | GCATTCGCTATGATT CAGCGGTGCCG CTGG CGGCGCCGCTG TTACTGCACAACCCA RHA1_ro10076 75157 - 75417 + | hypothetical protein RHA1_ro10077 75978 - 75454 - | hypothetical protein RHA1_ro10078 77094 - 76012 - | IS630 family transposase RHA1_ro10079 77746 - 77246 - | hypothetical protein RHA1_ro10080 78065 - 77736 - | hypothetical protein RHA1_ro10081 78388 - 78062 - | hypothetical protein RHA1_ro10082 79928 - 78792 - | transcriptional regulator RHA1_ro10083 80554 - 79925 - | hypothetical protein TERM 27 80577 - 80629 + r 81 -12.2 -3.90112 | gap 1, opp_overlap 80575 80595 80598 TCCCTTCTATAAGGT CGGTAGGTTCATGATACACGACCTA AATC TAGGTTGTAAAACATGAACC-ACCG TTTCCTTCGGGACCA RHA1_ro10084 82172 - 80844 - | hypothetical protein RHA1_ro10085 82415 - 83044 + | hypothetical protein RHA1_ro10086 83041 - 84300 + | hypothetical protein RHA1_ro10087 84488 - 85678 + | hypothetical protein RHA1_ro10088 85749 - 87050 + | hypothetical protein RHA1_ro10089 87061 - 87324 + | hypothetical protein TERM 28 87472 - 87423 - f 89 -14.9 -3.72695 | gap 1, opp_overlap 87471 ACGGCGCGGACTAAA GGGAACTGACGGCCCGGC-GGTCC CAC GGACCCGTTCGGCCGGCAGTCCCC GGCACCGGATGCGCC TERM 29 87471 - 87495 + F 71 -14.2 -2.73542 | opp_overlap 87423 TTCGGCCGGCAGTCC CCGGCACCGG ATGCG CCGGGGCCGG TACTTCCCGATTCCC RHA1_ro10090 87481 - 87663 + | hypothetical protein RHA1_ro10091 87660 - 88079 + | hypothetical protein RHA1_ro10092 88082 - 89782 + | hypothetical protein RHA1_ro10093 89813 - 90208 + | transposase RHA1_ro10094 90306 - 90722 + | transposase RHA1_ro10095 90728 - 90877 + | hypothetical protein RHA1_ro10096 90877 - 91674 + | hypothetical protein RHA1_ro10097 92414 - 91875 - | hypothetical protein RHA1_ro10098 92874 - 92710 - | hypothetical protein RHA1_ro10099 93658 - 92879 - | hypothetical protein RHA1_ro10100 94317 - 93886 - | hypothetical protein TERM 30 94048 - 94067 + gH 72 -11.4 -3.55444 | overlap 94039 GGCGACCTTCCCGGA CCGGGGAG TGGG TTCCCCGG TTTCGGCGATGGCGC RHA1_ro10101 94316 - 94927 + | integrase/recombinase RHA1_ro10102 94928 - 95311 + | integrase/recombinase RHA1_ro10103 95460 - 95828 + | hypothetical protein TERM 31 96084 - 96068 - T 72 -10.9 -3.53091 | opp_overlap 96070, overlap 96071 96082 ACTGGCCGTGGGAAA CAGTGTG GAA CACACTG TTCGACAGAACGTTC RHA1_ro10104 96821 - 96297 - | hypothetical protein RHA1_ro10105 97521 - 96874 - | hypothetical protein RHA1_ro10106 98225 - 97518 - | transmembrane protein RHA1_ro10107 98807 - 98274 - | hypothetical protein RHA1_ro10108 99471 - 98818 - | hypothetical protein RHA1_ro10109 99923 - 99468 - | hypothetical protein TERM 32 99967 - 100021 + H 100 -20.1 -3.74693 | gap 1, overlap 99968 ACGGCGTTTCGTGCG GTCTCGCACGGAGGACTCGCCCGG ATGAGGGG TCGGGCGCGTCC-CCGTGCGAGAG TTTCGTGGGATCAGA TERM 33 99968 - 100020 + H 100 -23.6 -2.84602 | gap 1, overlap 99967 CGGCGTTTCGTGCGG TCTCGCACGGAGGACTCGCCCGG ATGAGGGG TCGGGCGCGTCC-CCGTGCGAGA GTTTCGTGGGATCAG TERM 34 100460 - 100416 - g 82 -17.2 -3.01791 | gap 1 AGTTTGGCTCGAACA CCTGGAGGGCGTGAGCGGGAA ACGT TGCGCACTCACGCCCTCC-GG TACCCGCCCACTCAG RHA1_ro10110 100216 - 100482 + | hypothetical protein RHA1_ro10111 101518 - 100472 - | hypothetical protein TERM 35 100897 - 100885 - G 72 -4.1 -4.57073 | overlap 100886 CATCGTCGGTAAAAA CCGTT GCA AACGA GGTAGTTAGGTCGTC bphF4 102849 - 101839 - | 4-hydroxy-2-ketovalerate aldolase RHA1_ro10113 103052 - 102846 - | acetaldehyde dehydrogenase, C-terminal RHA1_ro10114 103576 - 103022 - | transposase, C-terminal RHA1_ro10115 103931 - 103536 - | transposase bphG4 104750 - 103962 - | acetaldehyde dehydrogenase bphE4 105595 - 104747 - | 2-hydroxypenta-2,4-dienoate hydratase RHA1_ro10118 105968 - 105603 - | hypothetical protein RHA1_ro10119 106664 - 106020 - | enoyl-CoA hydratase RHA1_ro10120 106878 - 108416 + | medium-chain acyl-CoA ligase bphT2 109073 - 108444 - | response regulator, two-component system bphS2 113866 - 109070 - | sensor kinase, two-component system TERM 36 114798 - 114827 + G 71 -10.7 -3.57144 | gap 1, opp_overlap 114792 CCGAGGACATGCCGA CCTAGTG-GCCACG GAT CGTGGCGCCCTGGG TTTGCCCGTGCCGCA RHA1_ro10123 114268 - 114849 + | hypothetical protein TERM 37 114904 - 114922 + G 76 -7.3 -4.25104 | overlap 114906 ATGCTGCTCGACCAG CCGGGCG ATCGG CGCCCTG TTTTCGTAGGCCGCC RHA1_ro10124 114889 - 115647 + | hypothetical protein etbAd 115764 - 116993 + | ferredoxin reductase bphB2 117026 - 117838 + | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase chnE 117946 - 119319 + | 6-oxohexanoate dehydrogenase RHA1_ro10128 119487 - 120041 + | acyl-CoA dehydrogenase, C-terminal RHA1_ro10129 120059 - 120649 + | acyl-CoA transferase, N-terminal TERM 38 120859 - 120838 - g 73 -9.5 -3.87354 | gap 1 GAAATCCAGATCAAA CG-CATGGGA CTG TCCCATGTCG CGATCTGTCCATACG RHA1_ro10130 120802 - 121353 + | acyl-CoA transferase, C-terminal RHA1_ro10131 121437 - 121907 + | short-chain dehydrogenase RHA1_ro10132 121928 - 122398 + | hypothetical protein etbAa1 122971 - 124341 + | ethylbenzene dioxygenase alpha subunit etbAb1 124364 - 124912 + | 3-phenylpropionate dioxygenase subunit beta etbC 124972 - 125889 + | 2,3-dihydroxybiphenyl 1,2-dioxygenase bphD1 126010 - 126867 + | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphE2 126918 - 127721 + | 2-oxopent-4-enoate hydratase bphF2 127733 - 128509 + | 4-hydroxy-2-oxovalerate aldolase RHA1_ro10139 128654 - 129058 + | ketosteroid isomerase-related protein RHA1_ro10140 129055 - 129906 + | oxidoreductase RHA1_ro10141 130218 - 129949 - | transposase RHA1_ro10142 130751 - 130215 - | hypothetical protein TERM 39 130455 - 130510 + g 90 -20 -3.15231 | gap 1, opp_overlap 130463, overlap 130462 CTCCCCGCTGCCTAA TCCGAAAA-TGAGGTGACCGTGCCG ACACCAG CGGCAAGGGCACCTCAATTTTCGGA TTAGCTCGTTGTCGT TERM 40 130462 - 130502 + g 82 -11.1 -4.19953 | opp_overlap 130463, overlap 130455 CTGCCTAATCCGAAA ATGAGGTGACCGTGCCG ACACCAG CGGCAAGGGCACCTCAA TTTTCGGATTAGCTC TERM 41 130501 - 130463 - G 95 -14.6 -4.19238 | opp_overlap 130462 130455 TGCCTAATCCGAAAA TGAGGTGACCGTGCCG ACACCAG CGGCAAGGGCACCTCA ATTTTCGGATTAGCT etbAa2 130966 - 132336 + | ethylbenzene dioxygenase alpha subunit etbAb2 132359 - 132907 + | 3-phenylpropionate dioxygenase subunit beta etbAc 132937 - 133302 + | ethylbenzene dioxygenase, ferredoxin component etbD2 133450 - 134274 + | 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase TERM 42 134832 - 134858 + G 70 -8.6 -3.90318 | overlap 134834 GCTGGCCTGGCGATC TATGCCGTCGGC GGA GCCGCGGGCATG TTTGTGGAGTCCTAC RHA1_ro10147 134550 - 135821 + | major facilitator transporter TERM 43 135843 - 135880 + F 76 -14.1 -3.06183 | opp_overlap 135834 TGAGAATCCCAAGTT TGGAACGGGTGGGCTCG AATC CGGGTCCAGCCGGTCCA TTCGGTCAGGCTGGG TERM 44 136324 - 136306 - g 72 -6.7 -4.30844 | gap 1, opp_overlap 136322 ACGTGACGACCAAAA TCGTGCGC AAAA GCGC-CGA TGAAGCCGTCCTCGT TERM 45 137595 - 137609 + G 70 -8.6 -3.87815 | GTCAAGAGCTGGGAC GTCGAT GGC ATCGAC TTTCTGGAACTGGAA TERM 46 140275 - 140265 - g 72 -3.2 -4.60041 | overlap 140266 140268 ATCGAGCGGGAAAAA CTAC GTC GCAG GTCCATGGAGTGGAT RHA1_ro10148 136080 - 140903 + | sensor kinase, two-component system RHA1_ro10149 140956 - 142089 + | transposase RHA1_ro10150 142471 - 142968 + | transposase RHA1_ro10151 144115 - 142922 - | IS110 family transposase RHA1_ro10152 144819 - 144223 - | hypothetical protein RHA1_ro10153 144941 - 145351 + | hypothetical protein RHA1_ro10154 146591 - 146196 - | sterol transfer protein RHA1_ro10155 146935 - 147198 + | hypothetical protein TERM 47 147487 - 147456 - g 77 -3.7 -4.67755 | gap 2, overlap 147457 147459 147460 ACATGGAGGCAAAAA GCAGCGCGTCGTCGC ACAG GCAAC-AC-CGCAGC AAGACCCAGCGTTCG RHA1_ro10156 147404 - 147664 + | hypothetical protein TERM 48 147719 - 147734 + T 74 -4.6 -4.57073 | overlap 147721 AAATTGGGCGACGAG GACCCG GTTC CGGGTG TTTTTGGGAACACTG RHA1_ro10157 148326 - 147883 - | CoA-transferase RHA1_ro10158 149138 - 148329 - | hypothetical protein RHA1_ro10159 151590 - 149260 - | 5-oxoprolinase RHA1_ro10160 153776 - 151620 - | 5-oxoprolinase (ATP-hydrolyzing) RHA1_ro10161 154226 - 153804 - | acetone carboxylase gamma subunit RHA1_ro10162 156190 - 154262 - | acetone carboxylase beta-subunit RHA1_ro10163 156421 - 158253 + | transcriptional regulator RHA1_ro10164 158773 - 158285 - | hypothetical protein RHA1_ro10165 159361 - 158993 - | hypothetical protein RHA1_ro10166 159801 - 159448 - | hypothetical protein TERM 49 160054 - 160022 - R 90 -15.5 -3.53012 | opp_overlap 160011, overlap 160023 160025 CCGGCTGCTCCGAAA TCACGTGCCGTCCGC ATC GCGAACGGCCCGTGG TCCGGCGGGGTTGTC TERM 50 160053 - 160023 - R 90 -19 -2.71712 | opp_overlap 160011, overlap 160022 160025 CGGCTGCTCCGAAAT CACGTGCCGTCCGC ATC GCGAACGGCCCGTG GTCCGGCGGGGTTGT TERM 51 160051 - 160025 - R 80 -15.8 -2.90496 | opp_overlap 160011, overlap 160023 160022 GCTGCTCCGAAATCA CGTGCCGTCCGC ATC GCGAACGGCCCG TGGTCCGGCGGGGTT RHA1_ro10167 160576 - 160118 - | MarR family transcriptional regulator RHA1_ro10168 160631 - 161704 + | transcriptional regulator amiE 162088 - 163125 + | acylamide amidohydrolase RHA1_ro10170 163335 - 164879 + | hypothetical protein TERM 52 164968 - 164930 - g 75 -9.5 -4.08692 | gap 1, overlap 164933 CAATGTGCTCGAAAA GTACC-GGGACGGAGCCG AGAT CGACTCCCTCCCCGGCGC TGCCACACTGTCGGT RHA1_ro10171 164898 - 165197 + | hypothetical protein TERM 53 165231 - 165210 - g 72 -5.1 -4.52703 | TAAAGGACGATAAAA TGGCACAAC TTTC GATGTACCA CAGCGCCACCGGAAA TERM 54 166529 - 166507 - g 81 -4.1 -4.83615 | opp_overlap 166508, overlap 166489 166508 CACCCTGCAGAAAAA GCTCGAAGA CACGC TCTCCGAGT TCCTCCTGCCCGGAG RHA1_ro10172 165209 - 166915 + | hypothetical protein RHA1_ro10173 167036 - 167287 + | transcriptional regulator TERM 55 167480 - 167470 - f 74 -5.4 -4.54727 | GCGCTGAAAGTAAAA GTGA CTG TCAC TGAGGGTCAAGTGCT RHA1_ro10174 167710 - 168804 + | high-affinity Ni(2+)-transporter TERM 56 169831 - 169858 + G 71 -11.2 -3.57263 | opp_overlap 169802 CCTTGGCTGACCGGA TTCACGCCGCCC GCGC GGCCGGCGCGAA TTTCACCATCGACCT RHA1_ro10175 169032 - 171191 + | acetyl-CoA hydrolase/transferase RHA1_ro10176 171372 - 172196 + | transposase RHA1_ro10177 172693 - 172286 - | hypothetical protein RHA1_ro10178 173493 - 172696 - | short chain dehydrogenase RHA1_ro10179 174301 - 173504 - | short chain dehydrogenase RHA1_ro10180 175238 - 174765 - | hydrolase TERM 57 174994 - 175023 + g 79 -18.7 -2.52464 | overlap 175021 GCGAATCTGCTGCCA CGGATCGATCTCC TGGC GGGGATCGATCCG TGGCTTGCACCGAAG RHA1_ro10181 175883 - 175290 - | transcriptional regulator RHA1_ro10182 178323 - 176563 - | sigma-54 dependent transcriptional regulator RHA1_ro10183 178881 - 178474 - | acetate--CoA ligase RHA1_ro10184 179325 - 179023 - | acetate--CoA ligase TERM 58 179439 - 179490 + r 89 -19.4 -2.52464 | gap 1, opp_overlap 179442 GTTGGCGGAGCCACC GAACG-GCGCATCCCGGACCGCGGG GCG TTCACGGTCCGGGATGCGCGCGGCC TCAGTTCAGGCGGAG TERM 59 179487 - 179442 - R 100 -24.9 -3.07816 | gap 1, opp_overlap 179439 GGCGGAGCCACCGAA CG-GCGCATCCCGGACCGCG GGGCGTT CACGGTCCGGGATGCGCGCG GCCTCAGTTCAGGCG RHA1_ro10185 179807 - 179496 - | ethyl tert-butyl ether degradation protein metX2 180985 - 179924 - | hypothetical protein TERM 60 180050 - 180088 + g 72 -13.8 -3.23395 | opp_overlap 180053 TTCGCTGTTCTTGAT CAATTCCTGCTCCGGGAC ACA GTCCCGGACCGGGAACAG TTGATCCTCGTCGAT TERM 61 180085 - 180053 - G 80 -16.3 -3.14132 | opp_overlap 180050 GCTGTTCTTGATCAA TTCCTGCTCCGGGAC ACA GTCCCGGACCGGGAA CAGTTGATCCTCGTC RHA1_ro10187 182663 - 181023 - | cyclohexanone monooxygenase RHA1_ro10188 182872 - 184026 + | transposase RHA1_ro10189 185039 - 184170 - | transposase RHA1_ro10190 185683 - 185315 - | hypothetical protein RHA1_ro10191 187269 - 185875 - | RNA-directed DNA polymerase TERM 62 187099 - 187136 + g 78 -16.3 -3.02263 | gap 1, overlap 187130 CATCCCCACACTCGC CTCCACGTCGGCGACGGT CAT ACCGTCGACGCCG-GGAG TCTTCGCGCCGGTAT RHA1_ro10192 188885 - 187842 - | transposase RHA1_ro10193 189853 - 189314 - | hypothetical protein TERM 63 189849 - 189824 - G 75 -5.4 -4.65078 | gap 1, opp_overlap 189828, overlap 189825 ACACTCCCAAGAAAA CGTCGGCGTCG GCGGG CGAC-CCGACC CCATTTTCAGGCCTG RHA1_ro10194 190264 - 189950 - | hypothetical protein tpaK 191716 - 190337 - | 4-hydroxybenzoate transporter TERM 64 190805 - 190784 - G 70 -8.7 -3.85698 | gap 1, overlap 190788 GGGCCCGGTGACAAA TG-CAGCGGC GAT GCCGCCGACA GTCGTGAGGGTGGTG tpaB2 192784 - 191774 - | ferredoxin--NAD(+) reductase tpaC 193797 - 192781 - | 4-hydroxythreonine-4-phosphate dehydrogenase tpaAb 194264 - 193794 - | aromatic ring dioxygenase beta subunit tpaAa 195526 - 194261 - | terephthalate 1,2-dioxygenase alpha subunit tpaR 195619 - 196425 + | IclR family transcriptional regulator RHA1_ro10201 196688 - 196912 + | hypothetical protein RHA1_ro10202 197105 - 198058 + | ABC transporter, substrate binding protein RHA1_ro10203 198073 - 198885 + | ABC transporter, ATP-binding component RHA1_ro10204 198882 - 199691 + | taurine ABC transporter permease RHA1_ro10205 199688 - 200503 + | ABC transporter, permease component patE 200579 - 201244 + | phthalate ester hydrolase (isochorismatase hydrolase) padR2 202098 - 201292 - | IclR family transcriptional regulator TERM 65 201830 - 201819 - G 78 -5.8 -4.57569 | overlap 201820 201826 CGAGCCTGGCAAAAA TCGC AAAC GCGA CCCCCGTCAGCGCTG padAa2 202256 - 203719 + | phthalate 3,4-dioxygenase alpha subunit padAb2 203716 - 204342 + | 3-phenylpropionate dioxygenase subunit beta RHA1_ro10210 204339 - 204650 + | hypothetical protein padB2 204647 - 205453 + | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase padAc2 205491 - 205685 + | phthalate 3,4-dioxygenase ferredoxin subunit padAd2 205685 - 206926 + | phthalate dioxygenase ferredoxin reductase subunit padC2 206923 - 207654 + | 3,4-dihydroxyphthalate decarboxylase RHA1_ro10215 208157 - 207798 - | chaperone protein DnaK RHA1_ro10216 208462 - 208340 - | hypothetical protein RHA1_ro10217 208575 - 209285 + | transposase RHA1_ro10218 209937 - 209404 - | hypothetical protein RHA1_ro10219 211048 - 210014 - | NADPH:quinone reductase TERM 66 210804 - 210773 - G 72 -6.5 -4.33248 | overlap 210776 210787 210790 CAATCCCACAACAAA CGATCCGACAGGA AGATCG TCCCGTCGGCTGG CGACGACCCGCCCCA RHA1_ro10220 211086 - 211817 + | hypothetical protein RHA1_ro10221 211814 - 212275 + | hypothetical protein RHA1_ro10222 212571 - 213101 + | transposase RHA1_ro10223 214275 - 213265 - | lipase RHA1_ro10224 214457 - 215113 + | hypothetical protein TERM 67 215477 - 215460 - g 75 -9.1 -4.15565 | CGGAGCAGGGGAAAA CCCTCGC AGAC GCGAGAG GGGAGGTCGCCCGTT RHA1_ro10225 215159 - 216667 + | methylmalonate-semialdehyde dehydrogenase RHA1_ro10226 216664 - 217134 + | hypothetical protein RHA1_ro10227 217312 - 218181 + | carveol dehydrogenase TERM 68 218313 - 218261 - T 100 -20.8 -3.7014 | opp_overlap 218269, overlap 218265 218266 218269 CAAAGCTGAATAGAA CAAATCGATCGCAGCGAACCGGTT TTTTT AACCAGTTCGCTGCGATTGCTCTG AACGACCCAAACTAA TERM 69 218309 - 218265 - T 100 -18 -4.46073 | opp_overlap 218269, overlap 218261 218266 218269 GCTGAATAGAACAAA TCGATCGCAGCGAACCGGTT TTTTT AACCAGTTCGCTGCGATTGC TCTGAACGACCCAAA TERM 70 218308 - 218266 - T 100 -21.5 -3.26921 | opp_overlap 218269, overlap 218265 218261 218269 CTGAATAGAACAAAT CGATCGCAGCGAACCGGTT TTTTT AACCAGTTCGCTGCGATTG CTCTGAACGACCCAA TERM 71 218305 - 218269 - T 100 -21.8 -2.80197 | opp_overlap 218269, overlap 218266 218265 218261 AATAGAACAAATCGA TCGCAGCGAACCGGTT TTTTT AACCAGTTCGCTGCGA TTGCTCTGAACGACC TERM 72 218269 - 218305 + T 100 -19.6 -3.25823 | opp_overlap 218266 218265 218261 218269 AATAGAACAAATCGA TCGCAGCGAACCGGTT TTTTT AACCAGTTCGCTGCGA TTGCTCTGAACGACC RHA1_ro10228 219068 - 218325 - | TetR family transcriptional regulator RHA1_ro10229 219571 - 221073 + | long-chain-fatty-acid--CoA ligase RHA1_ro10230 221453 - 224725 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro10231 225759 - 225052 - | hypothetical protein TERM 73 225784 - 225767 - H 70 -11.3 -3.32022 | overlap 225763 GCCGCCACACACCAA TCTGCGG AACC CCGCAGA TCAGGACCGGGAACG TERM 74 226271 - 226316 + H 76 -14 -3.16564 | gap 1, opp_overlap 226260 226259 AAACTGCGCCAATCG GCGC-CATCTGGCCCCAACGG CAAAC CCGTTGGGGCCAGGCCAGTGC TTGGTGGGGTGGGAG RHA1_ro10232 226778 - 227614 + | hypothetical protein RHA1_ro10233 227614 - 228027 + | hypothetical protein RHA1_ro10234 228939 - 228190 - | hypothetical protein RHA1_ro10235 229179 - 229514 + | hypothetical protein RHA1_ro10236 230416 - 229556 - | IS5 family transposase RHA1_ro10237 230709 - 231536 + | hypothetical protein RHA1_ro10238 231797 - 232264 + | hypothetical protein RHA1_ro10239 232340 - 232666 + | hypothetical protein RHA1_ro10240 233185 - 233715 + | hypothetical protein RHA1_ro10241 234469 - 235068 + | hypothetical protein RHA1_ro10242 235181 - 236059 + | hypothetical protein RHA1_ro10243 237748 - 236099 - | polysaccharide deacetylase RHA1_ro10244 238975 - 238358 - | hypothetical protein RHA1_ro10245 240237 - 239653 - | hypothetical protein RHA1_ro10246 240719 - 241414 + | hypothetical protein TERM 75 241549 - 241583 + G 85 -17 -3.19463 | GAGCGGGGTATGTGG GCAGGGCCGGACGAAC CGT GTCCGGCCGGCCCCGC TTCCTCGATCATGGC RHA1_ro10247 241470 - 241808 + | hypothetical protein TERM 76 241885 - 241929 + T 75 -2.8 -4.72272 | gap 2, overlap 241886 GCCGCAGATCGTGTG CGACGAATGCTGGGGATTGTCG CCG CG-CAGTTCCCGGCGC-CGTCA TTTTTCCTGCGAACC RHA1_ro10248 242297 - 242016 - | hypothetical protein RHA1_ro10249 243522 - 242836 - | hypothetical protein RHA1_ro10250 243970 - 243653 - | hypothetical protein RHA1_ro10251 244316 - 243957 - | hypothetical protein TERM 77 244584 - 244614 + r 100 -21.9 -2.78596 | opp_overlap 244599 GGTGAGCCGAAGCGG CCCGGCCGGAGTG AAGTC CGCTCCGGCCGGG TCTCGTCGGGACGTG RHA1_ro10252 245442 - 244636 - | hypothetical protein TERM 78 245824 - 245881 + G 70 -9.2 -3.92522 | gap 2, overlap 245826 245831 ACCGTTCGTTCCGTA CTTCGACCCGCGGATCGGTCGTCCGTCG ACTC CGATGGA-GACCTACCTGCGG-TTGATG TTTCTCAAGTTCCGC TERM 79 245831 - 245875 + G 76 -13.6 -3.50335 | gap 1, overlap 245826 245824 GTTCCGTACTTCGAC CCGCGGATCGGTCGTCCGTCG ACTC CGATGGA-GACCTACCTGCGG TTGATGTTTCTCAAG RHA1_ro10253 245687 - 246700 + | IS5 family transposase RHA1_ro10254 247629 - 246730 - | transposase RHA1_ro10255 247952 - 247626 - | transposase, N-terminal RHA1_ro10256 247930 - 248451 + | transposase RHA1_ro10257 248668 - 249504 + | transposase RHA1_ro10258 249812 - 250411 + | TetR family transcriptional regulator TERM 80 250571 - 250561 - g 72 -8.2 -4.10161 | overlap 250551 250562 CACGAGTCCTGAAAA GGGC CGT GCCC CTGCCCGTCCGCCGG RHA1_ro10259 250524 - 250991 + | transposase RHA1_ro10260 251035 - 251382 + | transposase RHA1_ro10261 251845 - 251477 - | hypothetical protein TERM 81 251779 - 251802 + g 73 -8 -4.18018 | CCGAAGGCCGCCGCT GGACTCCCCG AGCC CTGGGAGACC TTTTCGCTGACAGCA TERM 82 251848 - 251862 + G 75 -9.2 -4.23674 | opp_overlap 251848 251849, overlap 251849 GCTGAACTTGCAAAA TGGGGG CAT CCCCCG TTTATATTAATGGGG TERM 83 251862 - 251848 - g 73 -7 -4.14392 | opp_overlap 251848 251849, overlap 251849 GCTGAACTTGCAAAA TGGGGG CAT CCCCCG TTTATATTAATGGGG RHA1_ro10262 251847 - 253478 + | major facilitator superfamily multidrug resistance protein RHA1_ro10263 253518 - 254414 + | hypothetical protein RHA1_ro10264 254529 - 255368 + | lipase RHA1_ro10265 255559 - 256422 + | short chain dehydrogenase TERM 84 256474 - 256428 - T 75 -13.8 -2.94144 | opp_overlap 256456 256457 256471, overlap 256425 TCTCGATTGAAATGA TCGATCGCGCGCACAAACTC TTCCGCC AAGCTTCTGCGCGCGATCGC GTAGCGGCGTTATGG RHA1_ro10266 257044 - 256484 - | transposase TERM 85 257824 - 257870 + Gr 79 -11.6 -3.90291 | gap 1, opp_overlap 257820 257824 257825, overlap 257838 CCCCCGGGAAACAGA CGTCGTCGCCGCAGTCCGC GACGCGACCG GTGGAC-GCGGCGCCGATG TTTCGTTCGAGGCCT TERM 86 257838 - 257868 + Gr 75 -12.4 -3.54146 | opp_overlap 257825 257820 257824, overlap 257824 ACGTCGTCGCCGCAG TCCGCGACGCGACC GGT GGACGCGGCGCCGA TGTTTCGTTCGAGGC RHA1_ro10268 258566 - 258147 - | hypothetical protein RHA1_ro10267 257147 - 258208 + | Zn-containing alcohol dehydrogenase TERM 87 258607 - 258572 - TR 70 -11.1 -3.35197 | opp_overlap 258577, overlap 258573 CCCCACACACACGAA CGCCACCGGTACCGA ACGACG CCGGTACCGGTGGTT ACGCCCGAGGCAACT TERM 88 258606 - 258573 - TR 74 -14.6 -2.60797 | opp_overlap 258577, overlap 258572 CCCACACACACGAAC GCCACCGGTACCGA ACGACG CCGGTACCGGTGGT TACGCCCGAGGCAAC RHA1_ro10269 260383 - 259139 - | transposase RHA1_ro10270 260387 - 260647 + | hypothetical protein RHA1_ro10273 262719 - 261820 - | IS3 family transposase RHA1_ro10274 263042 - 262716 - | transposase TERM 89 263408 - 263427 + G 73 -10.6 -3.87994 | overlap 263409 TCGTGGAACCGGGCG ACGCGGGC CCAG GCCCGCGA TTTCTGCCGCTGGAT RHA1_ro10275 263150 - 264370 + | integrase/recombinase RHA1_ro10276 264367 - 266814 + | DNA integrase/recombinase RHA1_ro10277 267078 - 267782 + | transposase, C-terminal RHA1_ro10278 267909 - 268058 + | transposase RHA1_ro10279 268208 - 268378 + | transposase RHA1_ro10280 269052 - 268744 - | hypothetical protein RHA1_ro10281 270443 - 269163 - | L-lactate dehydrogenase (cytochrome) RHA1_ro10282 270494 - 270862 + | hypothetical protein RHA1_ro10283 271753 - 271277 - | hypothetical protein RHA1_ro10284 272539 - 271754 - | 2-dehydro-3-deoxyglucarate aldolase RHA1_ro10285 274053 - 272536 - | major facilitator superfamily multidrug resistance protein RHA1_ro10286 275082 - 274099 - | dioxygenase RHA1_ro10287 276197 - 275079 - | hypothetical protein TERM 90 275182 - 275214 + g 74 -15 -3.05596 | gap 1, opp_overlap 275174, overlap 275186 CACAGCACCCGCTCG CGAGCTTCGCCCTCG AGTC CGAGGG-GAAGTTCG TTGGGTGAACCGCTG RHA1_ro10288 276567 - 276199 - | Fe-S protein RHA1_ro10289 277842 - 276568 - | hypothetical protein RHA1_ro10290 277968 - 278654 + | GntR family transcriptional regulator RHA1_ro10291 278874 - 278662 - | Zn-binding dehydrogenase RHA1_ro10292 280145 - 278883 - | FAD-dependent oxidoreductase RHA1_ro10293 280952 - 280254 - | short chain dehydrogenase RHA1_ro10294 281273 - 281028 - | hypothetical protein RHA1_ro10297 284302 - 282758 - | long-chain-fatty-acid--CoA ligase TERM 91 283859 - 283810 - G 70 -8.4 -3.90744 | overlap 283795 283813 CCGCGGTGTAAATAA CGACCAGCGGGTCGCCGTCG-CCG ACGT CGACCGCCGGGGCCCCGCTCG-CG CCTCCGGCGAGGAAT TERM 92 283846 - 283813 - G 74 -15.3 -3.02371 | gap 1, overlap 283795 283810 CGGTGTAAATAACGA CCAGCGGGTCGCCGTC GCC GACGTCGACC-GCCGG GGCCCCGCTCGCGCC RHA1_ro10298 285200 - 284331 - | short chain dehydrogenase RHA1_ro10299 286891 - 285191 - | synthase RHA1_ro10300 287594 - 286902 - | hypothetical protein RHA1_ro10301 288937 - 287591 - | ligase TERM 93 288821 - 288856 + g 77 -14.6 -3.12668 | TTCGAGGGTCTTCTG CTCCTGGAGCGCGCGG AGGT CCGCGCGCGACATGAG TTCGGTCTCGGGCTC RHA1_ro10302 290426 - 288939 - | aldehyde dehydrogenase RHA1_ro10303 290665 - 290471 - | ferredoxin FdxD RHA1_ro10304 291001 - 290690 - | cytochrome P450, C-terminal TERM 94 291117 - 291132 + H 71 -10.4 -3.58208 | GTGGCGGTGAGACTT CGCTGC TACT GCAGCG TTCCTTCTTATCGGG RHA1_ro10305 291413 - 292657 + | transposase RHA1_ro10306 293908 - 292760 - | acyl-CoA dehydrogenase TERM 95 293642 - 293618 - G 83 -8.4 -4.62069 | opp_overlap 293632, overlap 293632 CGCGGAGGCCAAAAA CGGGCCAGCG AGAAG CGCGCGCCCG TGCTCCTCTAGCACG RHA1_ro10307 295131 - 293905 - | acyl-CoA dehydrogenase TERM 96 295592 - 295602 + G 71 -2.4 -4.57341 | CGGGCAATGCCACCG ACGC CGA GCGC TTTTTCGAGCCGATT RHA1_ro10308 295321 - 296526 + | hypothetical protein TERM 97 296594 - 296575 - g 78 -16.4 -3.07816 | opp_overlap 296554 CTTCGACCTACGGAA CCCGCCGC AGTG GCGGCGGG ATCCGGTCGAACTCT RHA1_ro10309 296543 - 297559 + | monooxygenase RHA1_ro10310 298136 - 297528 - | TetR family transcriptional regulator RHA1_ro10311 298137 - 299378 + | esterase TERM 98 300272 - 300294 + G 79 -7.6 -4.52589 | opp_overlap 300265, overlap 300273 300274 TCGACCAAGCGGGCT TCTCGACCGC CCT GCGGTCGAAC TTTTATGTGCACCAG RHA1_ro10312 299536 - 300432 + | enoyl-CoA hydratase RHA1_ro10313 300530 - 302329 + | 2,4-dichlorophenol 6-monooxygenase RHA1_ro10314 302326 - 303180 + | hydratase RHA1_ro10315 303185 - 304117 + | extradiol dioxygenase, type I TERM 99 304255 - 304292 + G 70 -15.5 -2.82516 | gap 1, opp_overlap 304250 304247 CACGAAACCAGCCAC GCCCTGGCCGCGTGCGAC GCC GACG-ACGCGGTCCGGGC TGTCGTGATCACCGG RHA1_ro10316 304114 - 304983 + | enoyl-CoA hydratase RHA1_ro10317 304983 - 305750 + | 3-hydroxyacyl-CoA dehydrogenase RHA1_ro10318 305809 - 306978 + | acetyl-CoA C-acyltransferase TERM 100 307660 - 307639 - g 72 -5.1 -4.4195 | gap 1, opp_overlap 307648, overlap 307644 AGAGATCGCACAAAA GACCACGGAC TGG GCCC-TGGCC GAGGGCTGGCAGGAG RHA1_ro10319 307010 - 307774 + | carnitinyl-CoA dehydratase TERM 101 307769 - 307781 + F 71 -9.1 -3.71527 | overlap 307771 CCAGTATGGCGCGGC CGGTG AAT CACCG TTTCACTACTTCGAC TERM 102 308631 - 308611 - g 83 -8.2 -4.62783 | overlap 308614 CACCGACCGGAAAAA TCACCGGC CGATC GCCGGAGA CAGCCCGGACGTGGA RHA1_ro10320 308460 - 309011 + | hypothetical protein RHA1_ro10321 309102 - 309470 + | hypothetical protein TERM 103 309612 - 309586 - f 71 -12.2 -3.21218 | overlap 309558 ACGGCTCACCACGAA GAGGGCGTTGGC GAC GCCGACTCCCTC CCCGATCCGGGTGAG TERM 104 310277 - 310239 - g 72 -14.5 -2.93723 | gap 1, opp_overlap 310237, overlap 310234 TCGTCATCAAGGACA CCCGCGCGGACGCT-CCG ACCA CGGCAGCGGCCGCGGAGG AGTTCATCGCCGATG RHA1_ro10322 309953 - 311185 + | ABC transporter substrate-binding protein RHA1_ro10323 311187 - 313916 + | ABC branched chain amino acid transporter ATP-binding subunit RHA1_ro10324 313913 - 314662 + | ABC branched-chain amino acid transporter, permease component RHA1_ro10325 314659 - 315108 + | hypothetical protein RHA1_ro10326 315105 - 315965 + | short-chain dehydrogenase TERM 105 316332 - 316374 + T 100 -22.1 -3.23692 | gap 1, opp_overlap 316327, overlap 316329 316334 CCTGTCAAGAGGCAG GC-TGAGGCGCCCGTCCTGA TTGT TCGGGGCGGGCGCCTCGTGC TTGGTCGTCGTGGTG TERM 106 316334 - 316371 + T 100 -23.5 -2.80492 | opp_overlap 316327, overlap 316329 316332 TGTCAAGAGGCAGGC TGAGGCGCCCGTCCTGA TTGT TCGGGGCGGGCGCCTCG TGCTTGGTCGTCGTG RHA1_ro10327 317063 - 316464 - | TetR family transcriptional regulator RHA1_ro10328 318867 - 317434 - | GntR family transcriptional regulator RHA1_ro10329 319194 - 319442 + | hypothetical protein RHA1_ro10330 319625 - 319891 + | hypothetical protein RHA1_ro10331 320392 - 320664 + | hypothetical protein RHA1_ro10332 321151 - 322311 + | long chain acy-CoA dehydrogenase RHA1_ro10333 322504 - 322683 + | hypothetical protein RHA1_ro10334 323711 - 322980 - | transposase RHA1_ro10335 325789 - 323906 - | hypothetical protein RHA1_ro10336 326467 - 326138 - | hypothetical protein RHA1_ro10337 327145 - 326708 - | hypothetical protein RHA1_ro10338 327742 - 327161 - | hypothetical protein RHA1_ro10339 329174 - 328050 - | amidohydrolase RHA1_ro10340 329892 - 329539 - | hypothetical protein TERM 107 330055 - 330022 - R 83 -15.3 -3.29511 | gap 1, opp_overlap 330053 GTTAGGTCTCGAGAA CGCCCCGCACGATCTC GGC GAGCTCGCGCGGG-CG GTCGCTCTGGACCGA RHA1_ro10341 330913 - 330008 - | hydrolase RHA1_ro10342 331601 - 330903 - | hypothetical protein RHA1_ro10343 332778 - 331594 - | acetyl-CoA acetyltransferase RHA1_ro10344 334193 - 332775 - | GntR family transcriptional regulator RHA1_ro10345 335788 - 334355 - | major facilitator superfamily multidrug resistance protein TERM 108 336261 - 336280 + G 70 -9.2 -3.86346 | CTCCCATGCCCGTCA CCGTCCGC GAGA GCGGACCG TTTCTCGGCGCGTCA TERM 109 336332 - 336371 + G 70 -9.2 -3.93963 | gap 1, overlap 336333 336335 CTCGGCCTACTGACG AGGTGCCCGATCCC-CGTC ACC GGCGTGGGGTCCGGCATCG TTTCTCGGTGATCCT RHA1_ro10346 336184 - 336576 + | hypothetical protein RHA1_ro10347 336577 - 336873 + | hypothetical protein TERM 110 337339 - 337328 - g 75 -5.8 -4.42386 | overlap 337331 337336 TGGCCATCTACAAAA CGAG GAGA CTCG CCCGCCTGTCACAGA RHA1_ro10348 337096 - 337404 + | hypothetical protein RHA1_ro10349 338186 - 338797 + | GTP cyclohydrolase I RHA1_ro10350 338853 - 339194 + | hypothetical protein RHA1_ro10351 339372 - 339989 + | transposase RHA1_ro10352 339986 - 340231 + | transposase RHA1_ro10353 340780 - 340235 - | hypothetical protein RHA1_ro10354 341193 - 340888 - | hypothetical protein TERM 111 341520 - 341462 - R 100 -27 -3.13728 | gap 1, opp_overlap 341466, overlap 341466 341468 AGCAGGCACAGTGAA GAGAGAGCCGATGGTGTCCACCCCACC TGAACT GCTGGGGTGGACACCATCGGCGCT-TC GTTGCTCAGGCGTCG TERM 112 341517 - 341466 - R 100 -28.9 -3.12142 | opp_overlap 341466, overlap 341462 341468 GGCACAGTGAAGAGA GAGCCGATGGTGTCCACCCCACC TGAACT GCTGGGGTGGACACCATCGGCGC TTCGTTGCTCAGGCG TERM 113 341466 - 341517 + r 100 -28.9 -3.39895 | opp_overlap 341466 341462 341468 GGCACAGTGAAGAGA GAGCCGATGGTGTCCACCCCACC TGAACT GCTGGGGTGGACACCATCGGCGC TTCGTTGCTCAGGCG TERM 114 341515 - 341468 - R 100 -30.1 -3.11786 | opp_overlap 341466, overlap 341466 341462 CACAGTGAAGAGAGA GCCGATGGTGTCCACCCCACC TGAACT GCTGGGGTGGACACCATCGGC GCTTCGTTGCTCAGG RHA1_ro10355 341942 - 341526 - | hypothetical protein RHA1_ro10356 342843 - 342004 - | dehydrogenase RHA1_ro10357 344086 - 342848 - | acyl-CoA dehydrogenase RHA1_ro10358 344880 - 344122 - | short-chain dehydrogenase RHA1_ro10359 345521 - 344877 - | TetR family transcriptional regulator RHA1_ro10360 346561 - 345518 - | hypothetical protein RHA1_ro10361 347056 - 347319 + | hypothetical protein TERM 115 349358 - 349368 + G 86 -6.8 -4.82901 | ACAACTTGTTTGGTC CCGA CTG TCGG TTTTTGTCGAGAGCA RHA1_ro10362 347568 - 350816 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro10363 350990 - 351499 + | hypothetical protein RHA1_ro10364 352048 - 351680 - | hypothetical protein RHA1_ro10365 352594 - 353580 + | dehydrogenase RHA1_ro10366 353940 - 353791 - | hypothetical protein RHA1_ro10367 354033 - 354392 + | transposase RHA1_ro10368 354479 - 354841 + | transposase RHA1_ro10369 355259 - 356725 + | major facilitator superfamily multidrug resistance protein RHA1_ro10370 357429 - 356869 - | transposase TERM 116 357583 - 357552 - H 85 -16.6 -3.11634 | GGGTACACCACGCAA CCGTGCCCGCCC GCCGCGTG GGGCGGGCACGA CCGGCATGGCGGTAT TERM 117 357614 - 357670 + H 89 -15.1 -3.75766 | overlap 357617 CGGCGATGATGTCAT TGTGGGCTCCTGGTGTAGTCGGGGA CATGCAC TCACCGACCCAACCAGGAGCCCTCA TTCTTCGATTCTAAG TERM 118 357617 - 357667 + H 81 -15.4 -2.96731 | overlap 357614 CGATGATGTCATTGT GGGCTCCTGGTGTAGTCGGGGA CATGCAC TCACCGACCCAACCAGGAGCCC TCATTCTTCGATTCT RHA1_ro10371 358318 - 359865 + | major facilitator superfamily multidrug resistance protein RHA1_ro10372 360054 - 361580 + | major facilitator superfamily multidrug resistance protein TERM 119 361622 - 361606 - T 70 -11.5 -3.33696 | overlap 361585 361582 CTGGGCGGCAACCAA CCAGCCG CCG CGGCCGG TGGGGGTGGAGATCG RHA1_ro10373 362497 - 361844 - | hypothetical protein RHA1_ro10374 362567 - 363004 + | hypothetical protein RHA1_ro10375 363006 - 363602 + | hypothetical protein RHA1_ro10376 363599 - 364117 + | hypothetical protein RHA1_ro10377 364697 - 364242 - | hypothetical protein TERM 120 365722 - 365698 - g 70 -9.2 -3.86916 | gap 1, overlap 365693 365712 GATGAGGACACCAAA CG-CCGCCTGG AAGA CCTGGCGGACG AGTACGGTCCCCGCC RHA1_ro10378 365035 - 366090 + | hypothetical protein RHA1_ro10379 366100 - 366471 + | hypothetical protein RHA1_ro10380 366615 - 366977 + | hypothetical protein RHA1_ro10381 366977 - 367306 + | hypothetical protein RHA1_ro10382 367945 - 367394 - | hypothetical protein RHA1_ro10383 369222 - 368134 - | hypothetical protein RHA1_ro10384 370089 - 369253 - | hypothetical protein RHA1_ro10385 370672 - 371805 + | transposase RHA1_ro10386 372556 - 371978 - | hypothetical protein RHA1_ro10387 372742 - 372984 + | hypothetical protein RHA1_ro10388 374230 - 372986 - | transposase RHA1_ro10389 377852 - 374559 - | protein kinase/ LuxR family transcriptional regulator RHA1_ro10390 378268 - 378702 + | hypothetical protein RHA1_ro10391 378801 - 379400 + | hypothetical protein RHA1_ro10392 379401 - 380045 + | hypothetical protein RHA1_ro10393 381124 - 380144 - | hypothetical protein RHA1_ro10394 381544 - 381287 - | hypothetical protein RHA1_ro10395 382170 - 381679 - | hypothetical protein RHA1_ro10396 382481 - 382167 - | hypothetical protein RHA1_ro10397 382772 - 382500 - | hypothetical protein RHA1_ro10398 384561 - 383185 - | permease TERM 121 384274 - 384247 - G 77 -14.8 -3.12351 | CGCTGTTACACCGAA GAGCAGGGCCGC AACG GCGGACCCGCTC GATCCGAATACGCGG TERM 122 384490 - 384470 - G 73 -9.7 -3.86897 | opp_overlap 384481 384484, overlap 384484 GTCATCCCCCAGAAA GCCATGGTC AGA GACCATCGC GGCACTCGATGGTCC accC2 386090 - 384753 - | acetyl CoA carboxylase biotin carboxylase subunit RHA1_ro10400 386391 - 386143 - | hypothetical protein RHA1_ro10401 387459 - 386695 - | hypothetical protein RHA1_ro10402 389902 - 388274 - | long-chain-fatty-acid--CoA ligase RHA1_ro10403 391361 - 390354 - | hypothetical protein RHA1_ro10404 391819 - 391538 - | hypothetical protein TERM 123 392215 - 392242 + r 70 -7.6 -3.96148 | overlap 392241 CCGTGGAAGGCGACG CTGCCCGGCAAG GGAG CTTGCGGGGAGG TTTCTGCTGAGCAAC RHA1_ro10405 393147 - 392281 - | GntR family transcriptional regulator RHA1_ro10406 394396 - 393416 - | hypothetical protein RHA1_ro10407 395298 - 394393 - | hypothetical protein RHA1_ro10408 395897 - 395337 - | hypothetical protein RHA1_ro10409 396464 - 395997 - | hypothetical protein TERM 124 396946 - 396909 - g 77 -17.1 -2.52464 | gap 1 TCGGTCTCGAAGTCA CTCG-CGCTTCCGCGGAC TCG GTACGCGGAAGCGCCGAA CCGCACCGCGCCGTC RHA1_ro10410 396818 - 397123 + | hypothetical protein TERM 125 397282 - 397238 - T 100 -26.5 -2.62983 | opp_overlap 397240 GCGAGCGGTACATCA TCGCGGATTGCGGCGGTCCCG GTT CAGGACCGCCGCAATCCGCTT CTCCGTGTCGTTCGG TERM 126 397240 - 397280 + T 100 -31.3 -3.41013 | opp_overlap 397238 GAGCGGTACATCATC GCGGATTGCGGCGGTCCCG GTT CAGGACCGCCGCAATCCGC TTCTCCGTGTCGTTC RHA1_ro10411 397723 - 397298 - | hypothetical protein RHA1_ro10412 398923 - 397763 - | hypothetical protein RHA1_ro10413 400055 - 398991 - | hypothetical protein RHA1_ro10414 400502 - 401992 + | aldehyde-alcohol dehydrogenase, N-terminal RHA1_ro10415 401985 - 402590 + | hypothetical protein TERM 127 402766 - 402782 + G 72 -5.1 -4.42806 | GGTCACCGGGCCGTT GCTGC GTTCCGG GCAGC TTTGTTTCCAGCTCG RHA1_ro10416 402587 - 403024 + | hypothetical protein RHA1_ro10417 403021 - 403287 + | hypothetical protein RHA1_ro10418 403300 - 403581 + | hypothetical protein RHA1_ro10419 403581 - 404288 + | hypothetical protein RHA1_ro10420 404380 - 405885 + | aminotransferase class III RHA1_ro10421 405878 - 406483 + | hypothetical protein TERM 128 406659 - 406675 + G 72 -5.1 -4.42806 | GGTCACCGGGCCGTT GCTGC GTTCCGG GCAGC TTTGTTTCCAGCTCG RHA1_ro10422 406480 - 406917 + | hypothetical protein RHA1_ro10423 406914 - 407180 + | hypothetical protein RHA1_ro10424 407193 - 407474 + | hypothetical protein TERM 129 407581 - 407566 - f 70 -6.1 -4.27584 | ACGCCCAACCCAAAA TCGCG CCAACC CGCGA TGACTGTTGCCATGA RHA1_ro10425 407742 - 408521 + | GntR family transcriptional regulator RHA1_ro10426 408881 - 408606 - | hypothetical protein RHA1_ro10427 408861 - 409595 + | enoyl-CoA hydratase RHA1_ro10428 410275 - 411732 + | amino acid transport protein RHA1_ro10429 412862 - 411768 - | AraC family transcriptional regulator TERM 130 412965 - 412942 - H 74 -2.4 -4.74453 | gap 1, overlap 412934 412946 412954 GAAGATACCGAAAAA TCGA-GCAGGA GAC TCCCACACCGA CAGTGGGCGTCCTAA RHA1_ro10430 413006 - 413644 + | hypothetical protein RHA1_ro10431 414159 - 414455 + | hypothetical protein RHA1_ro10432 415760 - 414816 - | LysR family transcriptional regulator TERM 131 416276 - 416261 - g 72 -5.4 -4.39828 | gap 1 AAGACGGGTACAAAA GCTCGCG CGC CGC-AGC CGTCAAGGACATGCT RHA1_ro10433 415903 - 417138 + | Xaa-Pro dipeptidase RHA1_ro10434 417196 - 418038 + | hypothetical protein TERM 132 418190 - 418151 - f 71 -10 -3.68222 | gap 1, overlap 418152 CGTGAATTTCAATAA TCCCTCGGTTGGCGCCG AGCCAGA CGGT-CCAACCGAGGGG CACGCGGACTTCCCC RHA1_ro10435 418392 - 419753 + | MFS superfamily proline/ betaine transporter RHA1_ro10436 419836 - 420963 + | cysteine synthase RHA1_ro10437 420977 - 421474 + | hypothetical protein RHA1_ro10438 421758 - 421471 - | hypothetical protein RHA1_ro10439 421745 - 422278 + | XerC/XerD family integrase/recombinase RHA1_ro10440 423008 - 422256 - | hypothetical protein TERM 133 422705 - 422729 + g 71 -11.3 -3.62096 | GGCGATGGCCGGAGA CGGCAGCGCCG GGT CGGCGCTGGGG TTTCCGGTGCTCGCG RHA1_ro10441 423322 - 423834 + | hypothetical protein TERM 134 424247 - 424218 - g 77 -17.2 -2.62184 | TGGTGCTGCAGAGCA GTCGGGACGGAC GACTGG GTCCGCCCCGAC TGCGAGCGAGCACTC RHA1_ro10442 424120 - 424419 + | hypothetical protein TERM 135 424469 - 424482 + F 84 -6.7 -4.73677 | TTAGTTATTCCTTCC GGTGA TCCA TCACC TTTCTTTGTTGTCCG RHA1_ro10443 424918 - 426657 + | hypothetical protein TERM 136 427172 - 427197 + T 95 -16.1 -4.06384 | opp_overlap 427170 427169 GGGTTTCGAGAAGTT GCCCTCGCCGT TCCA GCGGCGGGGGC TTTCTCGTGTTCCGA RHA1_ro10444 427666 - 427271 - | hypothetical protein TERM 137 427836 - 427869 + H 86 -13.2 -3.8901 | TGAGGTGGGTCCGGG CGTGGCAGATGGCT CTAGGA ACCCGTCTGCCACG TTTCGTCGTTTCAGG RHA1_ro10445 427926 - 428789 + | hypothetical protein TERM 138 429019 - 428982 - g 100 -14.2 -4.56978 | gap 1, opp_overlap 429008 GCGCGAAAGAAGAAA CCGGAGACACCAACCCC GAGAA GGGGT-GACGCCTCCGG CTCATCCTGTGCATA RHA1_ro10446 428786 - 429010 + | hypothetical protein RHA1_ro10447 429091 - 429462 + | hypothetical protein RHA1_ro10448 429638 - 431476 + | hypothetical protein RHA1_ro10449 432458 - 431655 - | hypothetical protein RHA1_ro10450 432631 - 434436 + | hypothetical protein RHA1_ro10451 434693 - 435340 + | hypothetical protein RHA1_ro10452 435774 - 437456 + | hypothetical protein RHA1_ro10453 437463 - 437840 + | hypothetical protein RHA1_ro10454 438157 - 437846 - | hypothetical protein TERM 139 438029 - 438083 + g 78 -16.6 -3.08464 | gap 1, opp_overlap 438035, overlap 438031 438035 CGGACTCGTGGCGTC CGCAAAGGTGCCGTATGGCCTGGTT CCTTGC AACCGGGCCATACGG-ACCCTGGTG TTCAGTCGGTGGTGG TERM 140 438031 - 438081 + g 74 -15.6 -3.10056 | gap 1, opp_overlap 438035, overlap 438029 438035 GACTCGTGGCGTCCG CAAAGGTGCCGTATGGCCTGGTT CCTTGC AACCGGGCCATACGG-ACCCTGG TGTTCAGTCGGTGGT TERM 141 438035 - 438078 + g 78 -17.5 -2.76171 | opp_overlap 438035, overlap 438031 438029 CGTGGCGTCCGCAAA GGTGCCGTATGGCCTGGTT CCTTGC AACCGGGCCATACGGACCC TGGTGTTCAGTCGGT TERM 142 438077 - 438035 - G 90 -17.2 -3.53012 | gap 1, opp_overlap 438031 438029 438035 CGTGGCGTCCGCAAA GGTGCCGTATGGCCTGGTT CCTTGC AACCGGGCCATACGG-ACC CTGGTGTTCAGTCGG RHA1_ro10455 439046 - 438207 - | hypothetical protein RHA1_ro10456 439404 - 439892 + | hypothetical protein TERM 143 440381 - 440422 + G 70 -12.7 -3.2794 | CATCTGAACCCGGTC CGGGAGGCGCTCCGCGCCG ACGA CGGCGCGTTGCACCGCCGG TTGCTGTCGCTCCGG RHA1_ro10457 439889 - 440548 + | hypothetical protein RHA1_ro10458 440722 - 441651 + | hypothetical protein SEQUENCE gi|111026827|ref|NC_008271.1| Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence (length 332361) TERM 1 635 - 600 - g 95 -23.4 -2.62184 | overlap 602 CGCCCCCGCACAGCA CACGGCCCGCACCC CGGGGATC GGGTGCGGGCCGTG CACGGAGAGAGGCGA TERM 2 633 - 602 - g 84 -20.2 -2.85351 | overlap 600 CCCCCGCACAGCACA CGGCCCGCACCC CGGGGATC GGGTGCGGGCCG TGCACGGAGAGAGGC RHA1_ro11001 377 - 655 + | hypothetical protein RHA1_ro11002 921 - 652 - | hypothetical protein RHA1_ro11003 1274 - 918 - | hypothetical protein RHA1_ro11004 1675 - 1295 - | hypothetical protein RHA1_ro11005 2379 - 1672 - | hypothetical protein TERM 3 2630 - 2584 - H 100 -23.9 -4.87626 | gap 1, overlap 2585 CCCGAACACGAAAAA CGCC-ACCCACCCATCCCGTGC CGGG GCACGGGATGGGTGGGTCAGCC AAACGAACGAAACAC TERM 4 2629 - 2585 - H 100 -27.4 -3.51853 | gap 1, overlap 2584 CCGAACACGAAAAAC GCC-ACCCACCCATCCCGTGC CGGG GCACGGGATGGGTGGGTCAGC CAAACGAACGAAACA RHA1_ro11006 2650 - 3609 + | hypothetical protein RHA1_ro11007 3727 - 4539 + | hypothetical protein RHA1_ro11008 5314 - 4577 - | hypothetical protein TERM 5 5162 - 5180 + g 73 -13.1 -3.41745 | overlap 5165 GGTGTAGTCGGTGCC GGCCGCC CGGGC GGCGGCC TTGGTGTTCTCCCGG RHA1_ro11009 6162 - 5311 - | hypothetical protein RHA1_ro11010 6995 - 6159 - | hypothetical protein TERM 6 6637 - 6694 + g 81 -12.9 -3.86897 | gap 3, overlap 6640 GTGGTGTTTTCTCGA GTC-CACTGGGCGCCGGTGGCCGGGG GCTGCGACG TCCCGGCCACCG-CGGC-AGTGTGAC TTTGTGCGAGGTCCG RHA1_ro11011 7749 - 7090 - | hypothetical protein RHA1_ro11012 7774 - 8568 + | phosphoadenylyl-sulfate reductase (thioredoxin) RHA1_ro11013 9860 - 8607 - | hypothetical protein RHA1_ro11014 11842 - 9998 - | hypothetical protein RHA1_ro11015 12187 - 11927 - | hypothetical protein RHA1_ro11016 13116 - 12184 - | hypothetical protein RHA1_ro11017 13190 - 14134 + | hypothetical protein RHA1_ro11018 14236 - 14538 + | hypothetical protein RHA1_ro11019 15200 - 14691 - | transcriptional regulator RHA1_ro11020 15297 - 15692 + | lysine exporter protein TERM 7 16181 - 16195 + T 72 -7 -4.24342 | ACGCACGAAGGACGA CTGGCC GCG GGCCCG TTTGTTCCTCCCGCG RHA1_ro11021 16677 - 16333 - | hypothetical protein RHA1_ro11022 18257 - 16674 - | fatty-acid--CoA ligase fabG2 19051 - 18263 - | 3-oxoacyl-[acyl-carrier-protein] reductase FabG lpdA 20415 - 19048 - | dihydrolipoyl dehydrogenanse TERM 8 20353 - 20322 - G 74 -15.8 -2.71144 | CATTGCCTTCAACCA CCGCGGTGCGCAGC CCGA GCTGCGCCCCACGA ATAGCGCTGACATAC RHA1_ro11025 21175 - 20408 - | hypothetical protein RHA1_ro11026 22119 - 21226 - | transposase RHA1_ro11027 22457 - 22116 - | transposase RHA1_ro11028 23556 - 22513 - | Zn-dependent alcohol dehydrogenase sucB 24861 - 23593 - | dihydrolipoyllysine-residue succinyltransferase RHA1_ro11030 25869 - 24874 - | pyruvate dehydrogenase TERM 9 25141 - 25167 + g 74 -14.4 -3.3482 | CGGCATGAGGGTGCG GGGGTCGACGAC TTC GACGTCGATCCC TTCCTTCGCGAGTTG RHA1_ro11031 26900 - 25866 - | pyruvate dehydrogenase RHA1_ro11032 28039 - 26897 - | isovaleryl-CoA dehydrogenase RHA1_ro11033 29071 - 28376 - | TetR family transcriptional regulator RHA1_ro11034 29189 - 31057 + | regulator of polyketide synthase expression RHA1_ro11035 31074 - 31856 + | 3-hydroxybutyryl-CoA dehydratase RHA1_ro11036 32395 - 33276 + | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 10 33317 - 33295 - T 70 -11.3 -3.36492 | gap 1, opp_overlap 33289 33288 33287, overlap 33296 CGGCCAATTGGAGAA CTCGCCAGGG TCGA CCCTGGCG-G CGCACTCCCCTTTTC RHA1_ro11037 33866 - 33444 - | hypothetical protein RHA1_ro11038 34410 - 33991 - | integrase RHA1_ro11039 34607 - 35095 + | transposase RHA1_ro11040 35916 - 35272 - | hypothetical protein fbiC 38488 - 35909 - | FO synthase RHA1_ro11042 38772 - 38485 - | hypothetical protein RHA1_ro11043 39257 - 38871 - | hypothetical protein limC3 40363 - 39536 - | dichlorophenolindophenol-dependent carveol dehydrogenase RHA1_ro11045 40544 - 40795 + | hypothetical protein TERM 11 40972 - 40954 - g 73 -16 -2.64987 | AAATATTCCATATGA GGCGCTGC AAA GCAGCGCC GATCCAGCAAGTAAG limB 40925 - 42187 + | limonene 1,2-monooxygenase (NADH-dependent) TERM 12 42782 - 42725 - g 71 -10.7 -3.59262 | gap 3, opp_overlap 42740 42741 42769, overlap 42741 GGCGAGATCTGTAAA CGTC--TGGCCAGCAAGATCGGTGACCG GTTTG CGGGCACCGA-CTGGCTTGCCACCGACG ATGGCAGCGTGTTTA RHA1_ro11047 42464 - 42958 + | oxidoreductase RHA1_ro11048 42958 - 44025 + | 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II RHA1_ro11049 44886 - 44251 - | transposase RHA1_ro11050 45264 - 44953 - | hypothetical protein RHA1_ro11051 45842 - 45435 - | transposase RHA1_ro11052 46467 - 46000 - | hypothetical protein RHA1_ro11053 47391 - 46582 - | N-acyl homoserine lactonase RHA1_ro11054 49392 - 47515 - | transcriptional regulator RHA1_ro11055 50713 - 50402 - | hypothetical protein aldH2 50747 - 52201 + | aldehyde dehydrogenase RHA1_ro11057 53188 - 52685 - | hypothetical protein TERM 13 53517 - 53545 + G 87 -20.3 -3.05384 | opp_overlap 53532 ATGACCGACGACGAT CCCTTCGCGACGC AAC GCGACGCGAAGGG TTCGATCACGGCGGA TERM 14 54608 - 54598 - g 83 -8.2 -4.56597 | overlap 54599 54600 GCGGGGTGGGAAAAA CGCG CCT CGCG CTGCAGGTTGCCGCC RHA1_ro11058 53502 - 56771 + | protein kinase/ LuxR family transcriptional regulator RHA1_ro11059 57200 - 56781 - | hypothetical protein RHA1_ro11060 58307 - 57612 - | DeoR family transcriptional regulator gnd4 58568 - 59464 + | 6-phosphogluconate dehydrogenase-like protein RHA1_ro11062 59458 - 60465 + | F420-dependent glucose-6-phosphate dehydrogenase TERM 15 60644 - 60621 - g 70 -8.2 -3.8647 | ATCGACTACAGCAAA CATCGTGTCA CCCG TGAGACGATG GGCCTGCTCGTTGAC TERM 16 61144 - 61168 + G 73 -9.9 -3.92625 | GGATCACCGAGGCAC TGGGGGAGCAC GCG GTGCCCCGCCA TTTCGTTGCGGTCTC pgi 60462 - 62117 + | glucose-6-phosphate isomerase TERM 17 62182 - 62197 + G 72 -3.9 -4.66163 | overlap 62182 62173 TGCCGCTTGCCGGGA CGCCG ACCCCG CGGTG TTTTTCCATCCCGAT RHA1_ro11064 62105 - 62461 + | WhiB family transcriptional regulator RHA1_ro11065 63354 - 63013 - | hypothetical protein TERM 18 63854 - 63836 - g 78 -5.9 -4.65895 | overlap 63838 CGTCCGAGCGAAAAA GGGCTCG CGGGC CCAGCCC AGTCGATCGAGGCAA RHA1_ro11066 63656 - 64102 + | transposase RHA1_ro11067 65719 - 64427 - | ferredoxin--NAD(+) reductase RHA1_ro11068 66164 - 65751 - | ferredoxin (ThcC) RHA1_ro11069 67411 - 66164 - | cytochrome P450 CYP257 TERM 19 67720 - 67691 - R 83 -14.5 -3.2048 | gap 1, overlap 67719 GGTAAACCCCATCAA GGTGTCTC-GAATG CTT CATTCTGAGACACC GGTAACCGGTAGAGT RHA1_ro11070 67971 - 67687 - | hypothetical protein RHA1_ro11071 68062 - 68928 + | 3-hydroxyacyl-CoA dehydrogenase RHA1_ro11072 69103 - 69432 + | hypothetical protein RHA1_ro11073 70006 - 70272 + | hypothetical protein TERM 20 70342 - 70392 + T 76 -6.2 -4.56597 | gap 2, overlap 70349 CACTGAAGATGCACA GGATGAGCCGGAGGCAGTCACCCC TACTC GGGGTTGGTGTCTCCGGTT--TCC TTTTTCGCGCGGAGC TERM 21 70349 - 70387 + T 95 -13.1 -4.32046 | overlap 70342 GATGCACAGGATGAG CCGGAGGCAGTCACCCC TACTC GGGGTTGGTGTCTCCGG TTTCCTTTTTCGCGC RHA1_ro11074 70574 - 70365 - | hypothetical protein RHA1_ro11075 71454 - 70579 - | hypothetical protein RHA1_ro11076 74316 - 71716 - | hypothetical protein RHA1_ro11077 75281 - 74334 - | AAA ATPase RHA1_ro11078 76125 - 75529 - | acyl carrier protein TERM 22 76137 - 76186 + r 74 -13.5 -3.20858 | overlap 76183 TCATTGCTGTTCCCC TCCGTCCGGGAGGCTCTGCGGCG GATA CGGCGCAGAGTGTTGCGGACCGA TTCCTCGGTCTGGTC RHA1_ro11079 77137 - 76118 - | hypothetical protein RHA1_ro11080 77784 - 77248 - | hypothetical protein TERM 23 77584 - 77620 + g 83 -19.6 -2.69647 | gap 1, overlap 77581 ACCCTCTTTGCCGAA G-TGGGGCCACCGGGAA GATT TTCCTGGTGGCCCCAAC TGATGTGTAAAGGTT RHA1_ro11081 78096 - 77818 - | hypothetical protein TERM 24 78310 - 78352 + G 100 -20.6 -3.53012 | GCGCGCACCGGAACG CCACACCTCCGTCGCAGCGT TCG ACGTTGCGGCCGAGGAGTGG TTTCCCGCGGCGGCC RHA1_ro11082 78145 - 78678 + | hypothetical protein RHA1_ro11083 79180 - 80130 + | hypothetical protein RHA1_ro11084 80319 - 80870 + | hypothetical protein RHA1_ro11085 81287 - 80958 - | hypothetical protein RHA1_ro11086 81648 - 81304 - | lysyl tRNA synthetase-like protein RHA1_ro11087 83247 - 81880 - | hypothetical protein TERM 25 83603 - 83590 - R 76 -5.9 -4.55287 | overlap 83591 CGGATTGAGAGAAAA CCCGG CAAC CCGGA GTCGGTGTGTCACGC RHA1_ro11088 85271 - 83619 - | hypothetical protein TERM 26 84222 - 84246 + g 78 -6.3 -4.56597 | overlap 84209 CCCGGCCGTCTTCCC CGCGGCCGT CTTCCCC GCTGCCGCG TTTTTCGCCGGAGCC RHA1_ro11089 85613 - 86089 + | hypothetical protein RHA1_ro11090 86620 - 86315 - | hypothetical protein RHA1_ro11091 86844 - 88178 + | hypothetical protein RHA1_ro11092 89102 - 88557 - | hypothetical protein RHA1_ro11093 89400 - 89230 - | hypothetical protein TERM 27 91762 - 91792 + G 77 -15.4 -3.15544 | opp_overlap 91749 GACCGACTCCTACCA CGCCGCCTCGGC GCTCGAG GCCGAGGCCGCG TTGGTGGCGCTGGCC RHA1_ro11094 91019 - 92164 + | transposase (mutator type) TERM 28 92277 - 92246 - T 93 -18 -3.25072 | overlap 92241 92274 GCTACGACAATCTAA CCGGTTGCGTCGGC GTCA GCCGGCACAACCGG ACGAGCGGCGGTCGC RHA1_ro11095 93535 - 92402 - | transcriptional regulator TERM 29 92747 - 92767 + g 81 -7.5 -4.62302 | overlap 92751 GGTCGTCACGGTCAA CGGTTCCTG ATT CAGGATTCG TTTTTCGAGGTCTTG TERM 30 94232 - 94193 - g 73 -7 -4.11692 | gap 1, overlap 94165 CAGCCACGCCGAAAA CGCGACGGCCGGCATCGAG GAA CTCGTCGCAGATC-TCGCG ATTGACCGGAAGGTC RHA1_ro11096 93759 - 94460 + | hypothetical protein TERM 31 94604 - 94623 + T 71 -10.6 -3.65827 | overlap 94605 AAGAGATCGACTGTG CGGCGCCC ACCG GGGCGCCC TTTCACTGAGGCTTC TERM 32 94605 - 94622 + T 73 -14.1 -2.79175 | overlap 94604 AGAGATCGACTGTGC GGCGCCC ACCG GGGCGCC CTTTCACTGAGGCTT TERM 33 94671 - 94646 - T 86 -16.1 -3.28924 | opp_overlap 94646 94647, overlap 94647 GAGGCTTCCCGAGAA TGCCGGCGTCG TCAT CGACGCCGGCG TTCTCGAGGTCTGCC TERM 34 94646 - 94671 + T 93 -18.3 -3.32343 | opp_overlap 94646 94647, overlap 94647 GAGGCTTCCCGAGAA TGCCGGCGTCG TCAT CGACGCCGGCG TTCTCGAGGTCTGCC TERM 35 94670 - 94647 - T 89 -19.6 -2.57211 | opp_overlap 94646 94647, overlap 94646 AGGCTTCCCGAGAAT GCCGGCGTCG TCAT CGACGCCGGC GTTCTCGAGGTCTGC TERM 36 94647 - 94670 + T 89 -19.6 -2.59191 | opp_overlap 94647 94646, overlap 94646 AGGCTTCCCGAGAAT GCCGGCGTCG TCAT CGACGCCGGC GTTCTCGAGGTCTGC RHA1_ro11097 95107 - 94766 - | hypothetical protein RHA1_ro11099 97738 - 97421 - | hypothetical protein RHA1_ro11098 95371 - 97485 + | ABC transporter, ATP-binding component TERM 37 97636 - 97603 - GT 71 -7.4 -4.07687 | gap 1, overlap 97604 97622 AGTCGCCGGTGAAAA CCCACCGAG-CGGCA ATCCA TACCGGCTCGGCGGC AATGGGTTCCGCCGC RHA1_ro11100 99669 - 97753 - | serine/threonine protein kinase TERM 38 98770 - 98789 + g 70 -4.2 -4.42386 | gap 1, overlap 98748 ATCCGGCGGGCCTGG CTCGGCGGC GTC GCC-CTGGG TTTTCTCGATGAGGG RHA1_ro11101 100003 - 100491 + | MarR family transcriptional regulator RHA1_ro11102 102676 - 100634 - | protein kinase TERM 39 102829 - 102805 - R 86 -15.9 -3.2327 | opp_overlap 102811, overlap 102811 CGAACGCACCACCAA GTATAACTCGG TAT CCGAGTTATAC GGGTGCCGAGGTGGA RHA1_ro11103 103527 - 103039 - | hypothetical protein RHA1_ro11104 103909 - 103577 - | hypothetical protein TERM 40 104679 - 104633 - g 100 -26.1 -2.87132 | gap 1, overlap 104636 CCTCTCCCCCACACA CGACTACGTCCGCCCCGGTCCA ACAT CGGACCGGGGCGGACGTAAT-G CAGGGCAGCCGTATC TERM 41 104677 - 104636 - g 95 -28.9 -2.69151 | overlap 104633 CTCCCCCACACACGA CTACGTCCGCCCCGGTCCA ACAT CGGACCGGGGCGGACGTAA TGCAGGGCAGCCGTA RHA1_ro11105 104331 - 104720 + | hypothetical protein RHA1_ro11106 105133 - 105291 + | hypothetical protein RHA1_ro11107 105398 - 105829 + | transposase TERM 42 105874 - 105860 - f 86 -12.8 -3.87364 | opp_overlap 105860 105856 GGCAGAACAACATAA CCCGGC TCA GCCGGG TGCCTTCGGTCTGCC RHA1_ro11108 106159 - 107292 + | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase RHA1_ro11109 107646 - 107329 - | hypothetical protein RHA1_ro11110 108482 - 107835 - | hypothetical protein TERM 43 108462 - 108428 - G 82 -16.5 -3.30124 | overlap 108455 108459 TTGCATCCGTCAGAA CCCCTGCGCTCACCC GACGA GGATAAACGCAGGGG CCCTCGTGGACGCGG RHA1_ro11111 108896 - 108486 - | excisionase RHA1_ro11112 109285 - 109623 + | hypothetical protein RHA1_ro11113 110230 - 109724 - | hypothetical protein RHA1_ro11114 110579 - 112282 + | hypothetical protein TERM 44 112543 - 112514 - T 86 -14.9 -3.4678 | opp_overlap 112515, overlap 112515 ATGTCGATATGAGAA GGGCCCTTCCCGC GGTC GCGGGGAGGGCCT TCGTCGGAGTGGTAA TERM 45 112542 - 112515 - T 87 -18.4 -2.67747 | opp_overlap 112515, overlap 112514 TGTCGATATGAGAAG GGCCCTTCCCGC GGTC GCGGGGAGGGCC TTCGTCGGAGTGGTA TERM 46 112515 - 112542 + T 100 -20.6 -3.15861 | opp_overlap 112515 112514 TGTCGATATGAGAAG GGCCCTTCCCGC GGTC GCGGGGAGGGCC TTCGTCGGAGTGGTA RHA1_ro11115 113412 - 112597 - | general secretion pathway protein TERM 47 112702 - 112729 + g 70 -12.6 -3.35996 | CACCGCCAGGTTGTT TACCGCCCGCGG ATAT CCGCGGGCCGCA TTGTGAATCAGGGTG RHA1_ro11116 114881 - 113409 - | transposase RHA1_ro11117 115589 - 114933 - | hypothetical protein RHA1_ro11118 115816 - 116280 + | hypothetical protein RHA1_ro11119 116297 - 117391 + | transposase RHA1_ro11120 117693 - 117388 - | hypothetical protein RHA1_ro11121 118151 - 117690 - | hypothetical protein RHA1_ro11122 118431 - 119267 + | DNA ligase TERM 48 119310 - 119281 - T 86 -12.8 -3.91689 | AGAAATCAGAGGAAA GCCGCCGGCACC TTCCCC GGTGTCAGCGGC TCCTCATCCCCTACG TERM 49 119403 - 119417 + T 89 -10 -4.52047 | GCCTCTCGGCAAGTG GTCGCT CGA AGCGAC TTTTCTGGTGTGGTA RHA1_ro11123 119658 - 119542 - | hypothetical protein TERM 50 120945 - 120934 - g 86 -5.8 -5.06816 | opp_overlap 120933 ATCCGGCAACAAAAA GCTC AAAC GAGC GCTGTTCCTCTCCGC RHA1_ro11124 119957 - 121132 + | transposase RHA1_ro11125 121263 - 121979 + | hypothetical protein RHA1_ro11126 122527 - 121976 - | hypothetical protein TERM 51 122544 - 122582 + r 100 -23.2 -4.34488 | opp_overlap 122527, overlap 122576 CTCTACGATCACCGA GGGCGCACCCCCGAAC CTAGGCC GTTCGGGGGCGCGCCC TTTGTTGTGCGTGTC RHA1_ro11127 122997 - 122596 - | hypothetical protein RHA1_ro11128 123132 - 123350 + | carbonic anhydrase RHA1_ro11129 123688 - 123377 - | transcriptional regulator TERM 52 123715 - 123754 + r 100 -20.2 -4.13945 | gap 1, opp_overlap 123719 123721 123723, overlap 123716 TCCTAGGATTCGGAT C-CAAGACACCGGGCAGGT ACC AACTGCCCGGTGTCTTGTG TTTTCCGGTCGAAAT TERM 53 123716 - 123752 + r 100 -23.9 -3.6692 | opp_overlap 123719 123721 123723, overlap 123715 CCTAGGATTCGGATC CAAGACACCGGGCAGGT ACC AACTGCCCGGTGTCTTG TGTTTTCCGGTCGAA TERM 54 123749 - 123719 - R 100 -19.8 -3.06302 | opp_overlap 123716 123715, overlap 123721 123723 AGGATTCGGATCCAA GACACCGGGCAGGT ACC AACTGCCCGGTGTC TTGTGTTTTCCGGTC TERM 55 123747 - 123721 - R 85 -16.6 -3.08996 | opp_overlap 123716 123715, overlap 123719 123723 GATTCGGATCCAAGA CACCGGGCAGGT ACC AACTGCCCGGTG TCTTGTGTTTTCCGG TERM 56 123745 - 123723 - R 72 -13.4 -3.10344 | opp_overlap 123716 123715, overlap 123721 123719 TTCGGATCCAAGACA CCGGGCAGGT ACC AACTGCCCGG TGTCTTGTGTTTTCC RHA1_ro11130 124145 - 123777 - | hypothetical protein TERM 57 125759 - 125742 - g 84 -7 -4.72188 | CGAACGGAAAACAAA CTACGC AACGGG GCGTAG ACGTCCTCTCGGGTG RHA1_ro11131 124931 - 126532 + | hypothetical protein RHA1_ro11132 126564 - 127091 + | hypothetical protein RHA1_ro11133 127576 - 127238 - | hypothetical protein RHA1_ro11134 128088 - 127576 - | hypothetical protein TERM 58 130472 - 130461 - g 71 -2.2 -4.56775 | ATTTCCGTGGAAAAA CCAG CTAC CTGA TCACATTCGAGGTGA RHA1_ro11135 128681 - 130621 + | hypothetical protein RHA1_ro11136 131127 - 130618 - | hypothetical protein RHA1_ro11137 131757 - 131203 - | hypothetical protein TERM 59 131780 - 131810 + r 71 -12.6 -3.24232 | overlap 131777 131774 GGGTCTCACGATTAT GGCCACCACGAT TTGTCTC AACGTGGTGGCC TGTCTTTAGGGGGGA TERM 60 131886 - 131918 + r 93 -17.7 -3.63569 | TCGGATAGGGTCAAG CCGGAGGCCCCCG ATACTCG CGGGAGCCTCCGG TTGTTCGCGAGTTCC RHA1_ro11138 132473 - 131937 - | hypothetical protein RHA1_ro11139 133288 - 132461 - | hypothetical protein RHA1_ro11140 133336 - 134367 + | hypothetical protein RHA1_ro11141 134438 - 135034 + | hypothetical protein RHA1_ro11142 135703 - 135182 - | hypothetical protein TERM 61 135365 - 135385 + g 88 -11.1 -4.43309 | overlap 135370 135373 TTCTCTCCATGCTGC CTCGCCGAG CAG CTCGGAGAG TTTTCGTTCGAGTTG RHA1_ro11143 138106 - 135707 - | transposase RHA1_ro11144 139338 - 138208 - | XerC/XerD family integrase/recombinase RHA1_ro11145 139920 - 139453 - | hypothetical protein TERM 62 140162 - 140144 - R 71 -7.4 -4.19238 | TCTCGAAGTTCAAAA TCCTCAGC ATC GATGAGGA CGGCCATGCACTCAT RHA1_ro11146 140495 - 140121 - | hypothetical protein TERM 63 140773 - 140792 + H 74 -10.6 -3.75015 | overlap 140772 GACCCTGTACCGATC GCGCGCCG CCGG CGACGCGC TTTCGTGAGCCTTCT TERM 64 141454 - 141470 + G 72 -6.5 -4.30844 | opp_overlap 141453 GATCAAACACGCAAT CCGCACT CGC AGTTCGG TTTTGGTCATCGGCT RHA1_ro11147 140846 - 141817 + | ATP-dependent DNA ligase TERM 65 141862 - 141833 - T 95 -18.6 -3.83205 | ACCGGCGAGAGGAAA GCCGCCGACGCC TTCCCC GGCGTCAGCGGC TCCTCATCGCTATCC RHA1_ro11148 142883 - 141954 - | hypothetical protein TERM 66 142166 - 142192 + g 74 -12.2 -3.59979 | overlap 142149 CGCGAAGACGGTCCA CGTCCTCGCGGG CTT CCTGCGCGGATG TTTGCGCTGCAGCGG TERM 67 142717 - 142702 - G 70 -8.2 -3.90291 | overlap 142703 ACGGCCTCAAGGAAA CCGCGG AGCT CCGCGA GACGGCGGGGCAGCT TERM 68 143427 - 143449 + G 74 -15.6 -3.05384 | opp_overlap 143427 ACATCGGGATGACAA CCGACACTGG GGC CCGGTGTCGG TTGCGTCGGAAGCGG TERM 69 143449 - 143427 - g 76 -13.4 -3.41229 | opp_overlap 143427 ACATCGGGATGACAA CCGACACTGG GGC CCGGTGTCGG TTGCGTCGGAAGCGG RHA1_ro11149 143123 - 143827 + | hypothetical protein RHA1_ro11150 144237 - 143848 - | hypothetical protein TERM 70 145213 - 145227 + G 75 -5.6 -4.56597 | opp_overlap 145202 145201 145224 AAACTCGGCGACACC CTGGCC GAA GACCAG TTTTTCGACCGGACC hsdM 144427 - 146163 + | type I restriction-modification system methyltransferase subunit TERM 71 146411 - 146423 + G 75 -5.5 -4.57073 | TGGTCGATTTTGGAC CGTCG ACA CGATG TTTTTCACCGAGCTG TERM 72 147315 - 147270 - g 70 -12 -3.34013 | gap 3 GACCTTGCCAAGGAA CGGCGATC-GGCACTCATCACCG CAG CGGTGACG-G-GCCAGATCGACG TGAGGGATGAGGTGG hsdS 146160 - 147335 + | type I restriction-modification system specificity subunit hsdR 147322 - 150447 + | type I site-specific modification system restriction subunit TERM 73 150895 - 150880 - g 83 -5.4 -4.82901 | gap 1 CTGTGGGTACAAAAA GGCGAGC ACG GCT-GCC CTAAGTCGCTACTAT RHA1_ro11154 150662 - 152128 + | hypothetical protein RHA1_ro11155 152455 - 152739 + | transposase RHA1_ro11156 152736 - 153398 + | transposase, N-terminal RHA1_ro11157 153409 - 153600 + | transposase, C-terminal RHA1_ro11158 154210 - 153884 - | WhiB family transcriptional regulator RHA1_ro11159 155795 - 154239 - | AMP-binding acyl-CoA synthetase RHA1_ro11160 156128 - 155823 - | hypothetical protein RHA1_ro11161 157024 - 156125 - | hypothetical protein fabG3 158167 - 157262 - | 3-oxoacyl-[acyl-carrier-protein] reductase RHA1_ro11163 158367 - 159227 + | hypothetical protein RHA1_ro11164 159267 - 160157 + | hybride transferase/ F420-dependent dehydrogenase RHA1_ro11165 160283 - 161416 + | hydrolase TERM 74 161651 - 161666 + G 86 -6.1 -5.02323 | opp_overlap 161651 GCCGTGGCGCCACAA CGGTG GGCACG CACCG TTTTCTTTGTCCTGG RHA1_ro11166 161508 - 162521 + | glucose-6-phosphate 1-dehydrogenase pgi 162550 - 164202 + | glucose-6-phosphate isomerase RHA1_ro11168 166546 - 164690 - | acyl-CoA synthetase TERM 75 166400 - 166366 - G 100 -27.4 -3.67597 | opp_overlap 166377 GCGCGCATCGAAGAA CCTGCAATGCAGGGAG AAT CTCCCTGCATTGCAGG TGTCGCCGACCTGAT RHA1_ro11169 167376 - 166558 - | carveol dehydrogenase TERM 76 167299 - 167350 + g 72 -14.4 -3.18274 | gap 2 CTCCTCCGCCAGTTT GGCCGCG-TGGGC-CCGGCCCTGC CCACGT GCGGCGCCGGTGATCAGCGCGGCC TTCCCTTCGACTCGA adhB 168608 - 167499 - | alcohol dehydrogenase RHA1_ro11171 170357 - 168720 - | hypothetical protein TERM 77 170457 - 170415 - R 100 -19.9 -2.87132 | opp_overlap 170417, overlap 170417 TGGTTGCGTCACACA CATCGCGCCCGGCGCAGAT CATTC ATCCGCGCCGAGCGCATTG CGCGATACCCGCGTC TERM 78 170455 - 170417 - R 85 -16.7 -2.98823 | opp_overlap 170417, overlap 170415 GTTGCGTCACACACA TCGCGCCCGGCGCAGAT CATTC ATCCGCGCCGAGCGCAT TGCGCGATACCCGCG RHA1_ro11172 171149 - 170433 - | hypothetical protein TERM 79 170724 - 170737 + g 81 -2.3 -4.98531 | opp_overlap 170718 170724, overlap 170718 CATAGTACACGAAAA CCTCC GCTC GGATG TTTTTCGTTTCGGAG RHA1_ro11173 172382 - 171156 - | major facilitator superfamily multidrug resistance protein TERM 80 173025 - 173081 + r 86 -18.8 -2.55544 | overlap 173029 173032 GGTCGTTCGTTCGAT GGTGCAGTCCCGGGCGGGATCGAT TTGTGGGGT ATCAATCTCGCCCGGGACTGCTGC TCAGTTCCGTCATCA RHA1_ro11174 174191 - 173094 - | ABC sugar transporter, permease component RHA1_ro11175 175723 - 174200 - | ABC sugar transporter, ATP-binding component RHA1_ro11176 176971 - 175805 - | ABC sugar transporter, periplasmic substrate binding protein TERM 81 177023 - 177039 + r 70 -7.3 -3.96148 | opp_overlap 177021 177023, overlap 177013 177015 GCCGAGGTACGAATA CCGTATT CTG GATACGG TTTGTGGTCAAGCCC TERM 82 177102 - 177142 + r 71 -9.6 -3.76402 | gap 1, opp_overlap 177096 CACTAGAACGTGCCG CT-GGGCGTACGGGCGGTG TACA CGCCGCCGCTCCGCCCGAG TTTCGTCGATCCGGT RHA1_ro11177 178987 - 177536 - | aldehyde dehydrogenase RHA1_ro11178 180258 - 179614 - | hypothetical protein RHA1_ro11179 182121 - 180331 - | glutaconate CoA-transferase RHA1_ro11180 182888 - 182139 - | 3-oxoacyl-[acyl-carrier-protein] reductase menB 183722 - 182937 - | naphthoate synthase RHA1_ro11182 184591 - 183761 - | enoyl-CoA hydratase RHA1_ro11183 185751 - 184588 - | acyl-CoA dehydrogenase TERM 83 185635 - 185602 - G 71 -11.7 -3.63991 | gap 1 GACGAGTCCGAAGAA CCCAG-ATTCCGCGAG GAT CTCGCGGATTGCAGGG CTGAAGGTCCCGGCC RHA1_ro11184 186154 - 185738 - | hypothetical protein RHA1_ro11185 187302 - 186151 - | acetyl-CoA acetyltransferase RHA1_ro11186 188103 - 187411 - | GntR family transcriptional regulator RHA1_ro11187 189312 - 188167 - | fatty acid-CoA racemase RHA1_ro11188 190723 - 189305 - | synthetase/ligase RHA1_ro11189 191260 - 191769 + | hypothetical protein RHA1_ro11190 192353 - 194362 + | acetyl-CoA synthetase RHA1_ro11191 194544 - 194978 + | hypothetical protein RHA1_ro11192 195235 - 195633 + | hypothetical protein RHA1_ro11193 196869 - 195928 - | resolvase, N-terminal TERM 84 196882 - 196893 + r 79 -5.8 -4.60889 | opp_overlap 196882 196880, overlap 196871 196869 CATGTGTCGACAATA CCCT GCAC AGGG TTTTTCGACATAGTT RHA1_ro11194 197114 - 196863 - | hypothetical protein RHA1_ro11195 197664 - 197263 - | hypothetical protein RHA1_ro11196 198412 - 197777 - | ATP-binding protease RHA1_ro11197 199083 - 198481 - | transcriptional regulator TERM 85 199464 - 199449 - g 79 -11.8 -3.96327 | opp_overlap 199438 ATCGCCGAGCAGAAA GCCCGC GACC GCGGGC TGACCGCACGGTTCC RHA1_ro11198 199188 - 199847 + | 3-demethylubiquinone-9 3-methyltransferase RHA1_ro11199 199841 - 200218 + | hypothetical protein RHA1_ro11200 200215 - 200472 + | hypothetical protein RHA1_ro11201 202274 - 200658 - | copper-binding oxidase RHA1_ro11202 202609 - 202337 - | hypothetical protein RHA1_ro11203 202742 - 203500 + | response regulator, two-component system RHA1_ro11204 203497 - 204654 + | histidine kinase RHA1_ro11205 204651 - 204983 + | hypothetical protein RHA1_ro11206 205278 - 204991 - | Cu(2+)-exporting ATPase RHA1_ro11207 206015 - 205275 - | hypothetical protein RHA1_ro11208 206611 - 206303 - | hypothetical protein RHA1_ro11209 206931 - 206800 - | hypothetical protein RHA1_ro11210 209412 - 206974 - | copper-exporting ATPase TERM 86 208000 - 208024 + g 71 -2.7 -4.56597 | CACGGTGTCGATCCG CGCCGACGT CTCGAGT GCGGTGGCG TTTTTGAACAACACC RHA1_ro11211 210228 - 209776 - | hypothetical protein RHA1_ro11212 210293 - 210577 + | copper ion binding protein TERM 87 210672 - 210701 + F 71 -13.6 -2.72344 | GCGGCGGGGCGCGTC GGCGATATCCGG GGAGTG CCGGATACCGCC TGGTTCAGGCTACCC TERM 88 211837 - 211809 - g 70 -12.3 -3.31461 | opp_overlap 211832 211833 GACCGAGGCGCAGAA CGGGAAGGCGCAG GTC CAGCGCCTCGCCG ACCGGATCTCGGCGG TERM 89 212303 - 212289 - g 79 -11.4 -4.08216 | CGAGGGCTTCGAAAA CCACGG CGG CCGTGG GGTGTCCGGTGTCGT RHA1_ro11213 210763 - 213024 + | copper resistance transporter, ATPase component TERM 90 213071 - 213025 - T 100 -28.9 -3.21218 | gap 1, overlap 213027 213030 ACCCCCCACCAGTAA CAGCACCCTCCACCCCGCTGCC CGAG GGCAGCGGGGTGGAGGGTTC-G CCGCCGATCACATCC TERM 91 213070 - 213027 - T 100 -32.6 -3.17051 | overlap 213025 213030 CCCCCACCAGTAACA GCACCCTCCACCCCGCTGCC CGAG GGCAGCGGGGTGGAGGGTTC GCCGCCGATCACATC TERM 92 213067 - 213030 - T 100 -32.9 -2.78495 | overlap 213027 213025 CCACCAGTAACAGCA CCCTCCACCCCGCTGCC CGAG GGCAGCGGGGTGGAGGG TTCGCCGCCGATCAC RHA1_ro11214 214623 - 213079 - | hypothetical protein RHA1_ro11215 215288 - 214620 - | ABC transporter, ATP-binding component RHA1_ro11216 215419 - 215676 + | hypothetical protein RHA1_ro11217 215676 - 216134 + | hypothetical protein RHA1_ro11218 217484 - 216168 - | major facilitator transporter TERM 93 217051 - 217101 + g 70 -14.7 -2.77899 | gap 1, overlap 217048 217052 AGGCCGCGGCGGGCG GGGCC-GACCAGGTCGATCTTCAT CACC ACGGTGGTCGACCAGGTCAGGCCC TGGTTGATGCCCAAC RHA1_ro11219 218845 - 217481 - | hydrolase RHA1_ro11220 218936 - 219598 + | ArsR family transcriptional regulator RHA1_ro11221 219905 - 219633 - | hypothetical protein TERM 94 219894 - 219912 + g 81 -10.3 -4.32951 | CCATCGCGTTGGGTG CTGACGG CGCAC CCGTCAG TTTGTTGGTTCAGAT RHA1_ro11222 220326 - 219940 - | hypothetical protein RHA1_ro11223 220389 - 220754 + | forkhead domain-containing protein RHA1_ro11224 222171 - 221002 - | ATPase RHA1_ro11225 225035 - 222168 - | hypothetical protein TERM 95 224773 - 224797 + g 81 -10 -4.26344 | gap 1 CGTCCTCGTGAGCCC GGGTGGGCGGG GTTG CCC-TCCACCC TTTTGATGGACATGT RHA1_ro11226 226593 - 225064 - | polysulphide reductase RHA1_ro11227 226823 - 226590 - | hypothetical protein RHA1_ro11228 227358 - 226849 - | NADH dehydrogenase RHA1_ro11229 227533 - 228678 + | hydroxyacylglutathione hydrolase RHA1_ro11230 228675 - 229064 + | hypothetical protein TERM 96 229352 - 229322 - g 78 -13.8 -3.61398 | GCGGCTGGTCAAGAA GGTGGCGGCCGGCG AGC CGCCGCCGGCCCCC GGCCTCGTACGCCTG RHA1_ro11231 229074 - 229433 + | hypothetical protein RHA1_ro11232 229493 - 229828 + | ArsR family transcriptional regulator RHA1_ro11233 230202 - 231692 + | hydrolase RHA1_ro11234 231731 - 232108 + | thioredoxin RHA1_ro11235 232580 - 232957 + | carboxymuconolactone decarboxylase TERM 97 233555 - 233536 - T 75 -10.8 -3.86524 | opp_overlap 233539 233540 ACACTTCCCGATAAA CTATACCC CTAG GGGTATAG TTCAGGTCGTTACGA RHA1_ro11236 234140 - 233565 - | hypothetical protein RHA1_ro11237 234223 - 234618 + | sulfurtransferase, rhodanese related RHA1_ro11238 234615 - 236783 + | membrane transporter RHA1_ro11239 236855 - 237151 + | hypothetical protein RHA1_ro11240 237192 - 237446 + | hypothetical protein RHA1_ro11241 237503 - 237916 + | hypothetical protein RHA1_ro11242 237961 - 238734 + | permease TERM 98 239811 - 239767 - g 76 -13.6 -3.43218 | gap 1, overlap 239757 239758 239761 GAGAACGAAGACCAA GTCGCCGACGCCCGCCGCGAA CTGG TCCGCATCGG-CATCGACGAC CTCACCGGCGCCGCG RHA1_ro11243 238822 - 240174 + | hypothetical protein RHA1_ro11244 240261 - 240620 + | hypothetical protein RHA1_ro11245 240839 - 240615 - | sulfate transporter RHA1_ro11246 241270 - 240836 - | hypothetical protein RHA1_ro11247 242398 - 241307 - | Zn-dependent oxidoreductase RHA1_ro11248 243021 - 242719 - | hypothetical protein RHA1_ro11249 243545 - 243796 + | hypothetical protein RHA1_ro11250 244346 - 243951 - | hypothetical protein RHA1_ro11251 244362 - 244631 + | hypothetical protein RHA1_ro11252 244665 - 245909 + | hypothetical protein RHA1_ro11253 246484 - 245921 - | hypothetical protein TERM 99 246494 - 246538 + H 93 -17.7 -3.51137 | CGTCATTTCCTCGAC CTGCCCGGCGAGGCTCCCGGC CCT GCCCGCCGTCTCGCCGAGCAG TTCTATGACCTGGTT RHA1_ro11254 246778 - 247467 + | hypothetical protein TERM 100 247560 - 247544 - T 79 -6.5 -4.46212 | opp_overlap 247544, overlap 247545 GGCGCCACGAGAAAA GTCGACC AGC GGTCGAA TTCCATTGGCCGGCT RHA1_ro11255 248371 - 247574 - | hypothetical protein RHA1_ro11256 250644 - 248371 - | hypothetical protein RHA1_ro11257 251136 - 250864 - | hypothetical protein RHA1_ro11258 251564 - 251175 - | hypothetical protein RHA1_ro11259 251746 - 252690 + | hypothetical protein RHA1_ro11260 253050 - 253445 + | hypothetical protein RHA1_ro11261 255387 - 254041 - | mycobacteriophage excisionase TERM 101 255421 - 255455 + r 100 -23.6 -3.50393 | overlap 255422 255424 CGGGGTCCCGGTCCA CGAGGCCCCCGCCGGT GCA ATCGGCGGGGGCCTCC TTATGTCGGCTCGGC TERM 102 255422 - 255454 + r 100 -27.1 -2.70022 | overlap 255421 255424 GGGGTCCCGGTCCAC GAGGCCCCCGCCGGT GCA ATCGGCGGGGGCCTC CTTATGTCGGCTCGG TERM 103 255424 - 255452 + r 100 -23.9 -2.89298 | overlap 255422 255421 GGTCCCGGTCCACGA GGCCCCCGCCGGT GCA ATCGGCGGGGGCC TCCTTATGTCGGCTC RHA1_ro11262 255916 - 255545 - | hypothetical protein RHA1_ro11263 256695 - 255913 - | ATPase, ParA type RHA1_ro11264 257429 - 256905 - | hypothetical protein RHA1_ro11265 259241 - 258006 - | hypothetical protein TERM 104 258982 - 258935 - G 71 -10.5 -3.68351 | gap 2, overlap 258936 CGGTCAGCATCGAAA GGTCGGCCGCAGGTGCGACCCGC GCGA GCGCGTCG-ACC-GCGGCCAGCG AGTGCGGGGACGGTG TERM 105 259435 - 259392 - R 77 -13.4 -3.42503 | gap 1, opp_overlap 259391 259390, overlap 259385 259395 TCGCAATAGCCAGAA CT-ACCTAGCGTTGCTAGC TCGCATT GCTAGCAACGGTAGGTCAG CGTTATTTGGCTGCC TERM 106 259431 - 259395 - R 77 -15.3 -2.86426 | opp_overlap 259391 259390, overlap 259385 259392 CAATAGCCAGAACTA CCTAGCGTTGCTAGC TCGCATT GCTAGCAACGGTAGG TCAGCGTTATTTGGC RHA1_ro11266 260236 - 259652 - | hypothetical protein RHA1_ro11267 261733 - 260399 - | replication protein TERM 107 260857 - 260872 + g 77 -11.8 -3.86776 | ATGAGGGTTGGTTCT CGCGCG CGCA CGCGCG TTTGGTGATTACTTC TERM 108 261000 - 261032 + g 93 -6.1 -5.32944 | TGAGTGTGCTTTGCC GCGCGGTGTGTCCTG CAG TGGGAGCTGCCGCGC TTTTTTGCTTGTGGG RHA1_ro11268 262538 - 262281 - | hypothetical protein TERM 109 262487 - 262521 + g 81 -12.1 -3.87104 | gap 1, overlap 262487 CCTTGTGGTGTCTGA GGGG-CGCGCGGGTAG CGAT TTGCCCGCGGGGCCCC TTGTTGTGCTGTGCC RHA1_ro11269 263071 - 262766 - | hypothetical protein TERM 110 262927 - 262869 - G 70 -14.7 -2.81173 | overlap 262855 ACCAAGTCGATGACA TTGGCGAGCCTCT-CTCGGGCGCCGACAC TCA GGGTCGGCGCCTCAGCAGAGA-TCACCAA AAGGCCGCATTCGGC RHA1_ro11270 263592 - 263068 - | hypothetical protein RHA1_ro11271 264008 - 263589 - | hypothetical protein RHA1_ro11272 265297 - 264053 - | transposase RHA1_ro11273 265764 - 265366 - | hypothetical protein TERM 111 265855 - 265897 + H 89 -18.6 -2.8372 | gap 1, overlap 265855 AGTCGACTTGCTGTT CTGA-CGGTCCCCTGGCTG CGCTAA CAGCCAGGGGACCGCTCAC GTTTAGTGAGACCTC TERM 112 265855 - 265898 + H 93 -18.4 -3.73224 | gap 2, overlap 265855 AGTCGACTTGCTGTT C-TGA-CGGTCCCCTGGCTG CGCTAA CAGCCAGGGGACCGCTCACG TTTAGTGAGACCTCC RHA1_ro11274 266034 - 266465 + | repressor protein TERM 113 266606 - 266589 - T 77 -8.4 -4.32034 | opp_overlap 266589 CGAGCATGACGAAAA GCCCCT TCGAGG AGGGGC TTTCTGCGTGCTGCG TERM 114 266589 - 266606 + T 73 -9.1 -3.93695 | opp_overlap 266589 CGAGCATGACGAAAA GCCCCTT CGAG GAGGGGC TTTCTGCGTGCTGCG TERM 115 266651 - 266637 - T 71 -7.8 -4.19238 | CGGGCAACGCGAAAA GGTCGC GCC GCAACC TCGGGTGAGGTGCGC RHA1_ro11275 267321 - 266758 - | intracellular septation protein RHA1_ro11276 268435 - 267350 - | hypothetical protein RHA1_ro11277 269639 - 268473 - | cytochrome P450 CYP258 RHA1_ro11278 269731 - 270786 + | hypothetical protein RHA1_ro11279 271494 - 270907 - | hypothetical protein TERM 116 270978 - 270988 + g 86 -6.8 -4.84761 | CGTACTCGGTGGCTG CGGT CTC ACCG TTTTTGTAGAAGTGT RHA1_ro11280 272093 - 271506 - | hypothetical protein RHA1_ro11281 275354 - 272382 - | hypothetical protein TERM 117 273498 - 273477 - G 78 -15.9 -3.05384 | opp_overlap 273480 273482 GTGTTGTTCACGCAA CCATGCGGC GGGT GCCGCATGG GGCGCCCACTGCCGT TERM 118 273547 - 273597 + g 78 -8.9 -4.25104 | gap 2, opp_overlap 273572, overlap 273529 273548 TCCATCGCGATGCGG ACGT-GTTCG-GGGCGGACGCCGAG AAC CTCGGCGGCCTCCCGCGAGGAACGG TTTTCGTCGACGACC RHA1_ro11282 276412 - 275351 - | ATP/GTP-binding protein RHA1_ro11283 278454 - 276409 - | transposase RHA1_ro11284 279344 - 278451 - | hypothetical protein TERM 119 279305 - 279292 - G 72 -6.7 -4.26076 | CGATTCTCACTAAAA TGTCG GAAG CGACA TCTGGGCGACAGATC RHA1_ro11285 281000 - 279378 - | peptidase RHA1_ro11286 281833 - 280997 - | hypothetical protein RHA1_ro11287 284091 - 281833 - | hypothetical protein TERM 120 283358 - 283368 + g 70 -8.2 -3.82097 | overlap 283355 GTCTTCGTGACCCCG GCCG TGT CGGC TTTCATGGCTTTCCA RHA1_ro11288 287144 - 284088 - | hypothetical protein TERM 121 284862 - 284900 + g 74 -14.6 -3.08471 | GTCGACGTTGGTTTC GTCCTTGCCGTCGCCG ATCGCGG CGATGGCGGCAAGGAC TTCGCTCAGGTTGTG TERM 122 285779 - 285807 + g 74 -15.3 -3.03771 | CGAGTGCGTGCTGTT CGGCCAGTTCCTG CGG CGGGGACTGGTCG TGTTCGACGGTGTAG RHA1_ro11289 287539 - 287141 - | hypothetical protein RHA1_ro11290 287895 - 287584 - | hypothetical protein RHA1_ro11291 288862 - 288548 - | hypothetical protein TERM 123 288992 - 289045 + G 71 -11 -3.54129 | gap 3 TACTTTCGGCGATTC CGGCGG-T-CGCGCCGGCCAGGTCG GCGAGAA CGGCCCG-CCGACGCGCATCCGCCG TTTCACCCCGCTCTC TERM 124 289860 - 289826 - g 82 -15.7 -3.40403 | gap 1, overlap 289827 GTTGGTCGACGAGAA CCTGCGGCACCTGCCG TATG CGACCGGTGCCGC-GG ACCGAATCATGTACT TERM 125 289860 - 289827 - g 73 -15.9 -2.64099 | overlap 289826 TTGGTCGACGAGAAC CTGCGGCACCTGCCG TATG CGACCGGTGCCGCGG ACCGAATCATGTACT RHA1_ro11292 288864 - 291068 + | DNA translocase RHA1_ro11293 291157 - 291504 + | hypothetical protein RHA1_ro11294 291507 - 293000 + | hypothetical protein RHA1_ro11295 293050 - 294264 + | hypothetical protein TERM 126 294674 - 294656 - g 72 -6.6 -4.24948 | overlap 294657 294660 CGAGCAGACCGAAAA CGCATCCG CGT CGGACGGG GATTGCCGGGCAGAC RHA1_ro11296 294288 - 295001 + | hypothetical protein TERM 127 295656 - 295632 - g 70 -12.2 -3.33037 | gap 1, overlap 295625 ATCGGAAACGATCAA GGACCC-GTCG ATGC CGACCGGGTCC TCGGTGTGGCCCTGC RHA1_ro11297 295155 - 297167 + | hypothetical protein RHA1_ro11298 297259 - 298404 + | N-formylglutamate amidohydrolase RHA1_ro11299 298436 - 299536 + | hypothetical protein RHA1_ro11300 300440 - 299853 - | hypothetical protein TERM 128 300106 - 300125 + g 75 -4.8 -4.56597 | TGATCCTTCAGCACT GCGACCGG ACGT CCGGCAGC TTTTTCCAGGACCGA RHA1_ro11301 301134 - 300763 - | ATP-dependent helicase RHA1_ro11302 302422 - 301169 - | ATP-dependent helicase RHA1_ro11303 302689 - 302964 + | hypothetical protein TERM 129 303097 - 303115 + F 70 -5.9 -4.23213 | overlap 303098 ACAGGTGTCGAATCG TCCCTCC CGAAT GGAGGGC TTTCTTGCCTATCAG RHA1_ro11304 303265 - 303498 + | hypothetical protein pknK2 304908 - 303937 - | serine/threonine protein kinase RHA1_ro11305 303504 - 304001 + | hypothetical protein TERM 130 304017 - 304054 + gT 100 -22.8 -4.0641 | opp_overlap 304017 CGTCAGACACGACAA TGCGCCCCACCCTCCC AGCATC GGGAAGGTGGGGCGCA TTTGTGTCGGTAGGC TERM 131 304054 - 304017 - GT 100 -25.7 -3.49777 | opp_overlap 304017 CGTCAGACACGACAA TGCGCCCCACCCTCCCA GCAT CGGGAAGGTGGGGCGCA TTTGTGTCGGTAGGC TERM 132 304086 - 304128 + gT 84 -13.4 -3.72576 | opp_overlap 304110, overlap 304078 GTGTAATTTGCCCGG TGGGCGATCTGGTCGGAG AGGGAAG CTCCGGTCGGGCCGCCCA TTTGCTCCGCCGACC RHA1_ro11307 305619 - 304978 - | 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II TERM 133 305031 - 305063 + g 70 -14.9 -2.78596 | opp_overlap 305040, overlap 305055 305062 TCAGATGATGTGCGT CGGCGAACAGGAATG CCT CATTCCTGTCCGCCA TGTCGTGGGGACGTG RHA1_ro11308 306003 - 305632 - | hypothetical protein macA 307112 - 306018 - | maleylacetate reductase TERM 134 306646 - 306623 - G 74 -12.5 -3.6502 | CACTCGCGACCGAAA TGTCCACCG GCAGGT CGGTGGACA GGGCCGGGTCGTAGA RHA1_ro11310 308001 - 307102 - | hydroxyquinol 1,2-dioxygenase RHA1_ro11311 308291 - 307998 - | hypothetical protein RHA1_ro11312 308851 - 308333 - | flavin reductase-like domain-containing protein RHA1_ro11313 310077 - 308854 - | indole oxygenase RHA1_ro11314 310249 - 311307 + | AraC family transcriptional regulator TERM 135 311837 - 311812 - g 95 -19.1 -3.65812 | TCCTGTGCAAGAGAA CTGTCGCGAGC ACGC GCTCGCGACAG GAGAGTACGGAGTGT RHA1_ro11315 311597 - 311917 + | WhiB family transcriptional regulator RHA1_ro11316 312026 - 313240 + | malate dehydrogenase (oxaloacetate-decarboxylating) RHA1_ro11317 313807 - 314811 + | AraC family transcriptional regulator RHA1_ro11318 315719 - 314826 - | hypothetical protein RHA1_ro11319 315759 - 316730 + | oxidoreductase RHA1_ro11320 316809 - 318128 + | cytochrome P450 CYP116 RHA1_ro11321 318728 - 319033 + | ethyl tert-butyl ether degradation protein TERM 136 319059 - 319094 + F 77 -11.2 -3.78409 | opp_overlap 319056 319057, overlap 319057 319083 GCATTCACAACACGG GGGTTTCTCCGCCA TATATTGT TGGCGGAGAACCTC TTTCGCTTAGATTCG RHA1_ro11322 319352 - 320401 + | hypothetical protein TERM 137 320520 - 320500 - f 73 -12.5 -3.37796 | overlap 320501 GTGCATGATCGACAA CTCGCGGGC GCA GCCCGCGAT GAACCAGAGCGACCC TERM 138 320519 - 320501 - f 77 -16 -2.62463 | overlap 320500 TGCATGATCGACAAC TCGCGGGC GCA GCCCGCGA TGAACCAGAGCGACC RHA1_ro11323 320628 - 321041 + | hypothetical protein TERM 139 321058 - 321092 + F 71 -12.1 -3.24924 | overlap 321055 321059 CAGATACCGGTCAAC TCGCGCGGGACTTAC TGTCC GCAAGTCCCGCCCGG TCTTCTACGTCCCCG TERM 140 321425 - 321448 + G 71 -3 -4.56597 | opp_overlap 321424, overlap 321426 CAACTGAAGATGAAT GCCGGCGG CTTACTTC CCGTCGGA TTTTTCACCCGACGC RHA1_ro11324 321125 - 321574 + | hypothetical protein RHA1_ro11325 321849 - 322085 + | hypothetical protein RHA1_ro11326 322219 - 322914 + | chlorite dismutase TERM 141 322919 - 322893 - T 84 -15.2 -3.31144 | GGTGGATGTGGAGAA GCTGATCACTGC TCT GCCGTGATCAGC GGCACCCGGCGACGG pgi 324660 - 322981 - | glucose-6-phosphate isomerase TERM 142 324286 - 324273 - G 72 -5.9 -4.36914 | GCCGGTCGGAGAAAA CGCCC ATGC GAGCG AGAACGCGGTGAACA gnd5 325563 - 324664 - | 6-phosphogluconate dehydrogenase-like protein RHA1_ro11329 326379 - 325750 - | 3-hexulose-6-phosphate synthase TERM 143 326037 - 326074 + g 71 -10.5 -3.68569 | GCTCGACACGGTTCT GCACGCCGATCAGGTCG GCGA CGACCTTCTTGCCGTGC TTCTTGCCTGCCTCG RHA1_ro11330 327010 - 326429 - | 6-phospho-3-hexuloisomerase TERM 144 327070 - 327118 + H 89 -18.8 -3.09516 | gap 1, opp_overlap 327048 GACTCCGGTGCGCCG CGGCACCCGGCCGGTCGGCCGGT TCGG GCCGGCCGCTTGGCCAG-TGCCG TTGCCTCGTACCCGG RHA1_ro11331 327158 - 328441 + | LuxR family transcriptional regulator zwf5 330135 - 328588 - | glucose-6-phosphate 1-dehydrogenase RHA1_ro11333 330274 - 330774 + | phosphate transporter PhoU RHA1_ro11334 331655 - 331041 - | ATP-dependent Clp protease ATP-binding subunit