TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.395082 %AT, 4337554 nt, 42804 terms. Intergenic: 0.465472 %AT, H2T: 396782 nt, 3538 terms; T2T: 119680 nt, 2346 terms; H2H: 157504 nt, 2799 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|89885732|ref|NC_007901.1| Rhodoferax ferrireducens T118 plasmid1, complete sequence (length 257447) Rfer_4246 1791 - 1 - | type II secretion system protein E TERM 1 753 - 775 + g 77 -3.5 -4.98255 | gap 1 GGATGTCCGACTCGG GTGGAATTTC CAAT GAAAT-CCGC TTTTTGTACTTGGCC Rfer_4247 3113 - 1803 - | hypothetical protein Rfer_4248 3644 - 3123 - | hypothetical protein Rfer_4249 5098 - 3647 - | hypothetical protein Rfer_4250 5593 - 5114 - | hypothetical protein Rfer_4251 6730 - 5603 - | hypothetical protein TERM 2 6169 - 6180 + g 76 -5.8 -4.59109 | opp_overlap 6155 6168 GGGCGAGTACCAATT TCGC CGCG GCGA TTTTTGACACCTGTG Rfer_4252 8049 - 6727 - | conjugation TrbI-like protein TERM 3 7911 - 7944 + g 77 -8.1 -4.40804 | overlap 7893 7914 TGCCGGCCTTGTCGT TGGCGTCCTTCGCTA TAGG TGGCGCAGGACGTGA TTTTGTCAGGTCGTA Rfer_4253 8912 - 8100 - | conjugal transfer protein TrbG/VirB9/CagX Rfer_4254 9655 - 8912 - | Type IV secretory pathway component VirB8-like TERM 4 9849 - 9867 + r 74 -10.3 -3.54424 | ATCGCCAGTCCAGCG TTGCCGG ATGGC CCGGCAA TTTGGCCAACTACAG Rfer_4255 11943 - 9877 - | AAA ATPase, central region Rfer_4256 12350 - 11943 - | hypothetical protein Rfer_4257 12843 - 12496 - | hypothetical protein TERM 5 12771 - 12757 - G 70 -10 -3.53091 | ACGTTGTTCCTTAAA GAACGC CTT GCGTTC AAGAAACTCAGTCTT Rfer_4258 14875 - 12974 - | hypothetical protein TERM 6 13853 - 13841 - G 83 -4.8 -5.14563 | CGGCCCACTAAAAAA TCCG GTCGT CGGA ATCCTAGCCAATTCG Rfer_4259 15657 - 14893 - | hypothetical protein Rfer_4260 18189 - 15694 - | Type IV secretory pathway VirB4 components-like TERM 7 17337 - 17369 + g 90 -14.9 -3.60792 | overlap 17338 TGATTTCTCCCTCAA TCGTGGTCAGCCAGT CAA GCTGGCTAACCACGG TTTCAGCATTGCCAC TERM 8 17338 - 17368 + g 79 -16.2 -2.76261 | overlap 17337 GATTTCTCCCTCAAT CGTGGTCAGCCAGT CAA GCTGGCTAACCACG GTTTCAGCATTGCCA Rfer_4261 18488 - 18183 - | hypothetical protein Rfer_4262 18867 - 18499 - | conjugal transfer protein TrbC Rfer_4263 19863 - 18868 - | type II secretion system protein E TERM 9 18960 - 18972 + g 71 -6.9 -4.1822 | opp_overlap 18959 ACTCGGTGATAAAGC GCCGG CCG TCGGC TTTCTTGAAGTGAGC TERM 10 19816 - 19828 + g 85 -6.2 -5.09426 | opp_overlap 19816 ACGAATCAAGTCAAA CGCC TTTTC GGCG TTTTTTGCGGTTGCA Rfer_4264 20564 - 19935 - | hypothetical protein Rfer_4265 21202 - 20573 - | hypothetical protein TERM 11 21166 - 21189 + g 70 -3.1 -4.65747 | gap 1, opp_overlap 21148, overlap 21169 AATGAAAGAGTTTTG TTGCGGG-GG ACCGA CCGCCCGTGA TTTTATTAAACATTC Rfer_4266 23084 - 21195 - | hypothetical protein Rfer_4267 25021 - 23093 - | relaxase TERM 12 24563 - 24542 - G 73 -4.3 -4.60924 | opp_overlap 24543, overlap 24543 CAAACCGGTCAAAAA GGCAGCATG TCGC CACGCCGCT TCAGTTTGTCGGCGA Rfer_4268 25696 - 25127 - | hypothetical protein Rfer_4269 25970 - 25686 - | hypothetical protein TERM 13 26481 - 26469 - g 91 -7.7 -4.79075 | overlap 26464 AAAAAGTGAAGAAAA CTTGG TTT CCAAG GAACTCACAGTCATC Rfer_4270 26443 - 27141 + | hypothetical protein TERM 14 27153 - 27164 + T 75 -5.8 -4.65895 | opp_overlap 27153 CTGAGCAAAGAATCA CGGA GCCC TCCG TTTTTGACTGGACAA TERM 15 27184 - 27224 + T 100 -17 -5.21709 | opp_overlap 27189, overlap 27189 TGACTGGACAAATAG AAAAACCCTCCAACGGCC ACGAA GGCCTTTGGAGGGTTTTG TTTTTTGGTCTCAAG TERM 16 27189 - 27219 + T 100 -16.9 -5.45813 | opp_overlap 27189, overlap 27184 GGACAAATAGAAAAA CCCTCCAACGGCC ACGAA GGCCTTTGGAGGG TTTTGTTTTTTGGTC TERM 17 27219 - 27189 - T 100 -16.9 -5.24799 | opp_overlap 27189 27184 GGACAAATAGAAAAA CCCTCCAACGGCC ACGAA GGCCTTTGGAGGG TTTTGTTTTTTGGTC Rfer_4271 28269 - 27235 - | hypothetical protein TERM 18 27591 - 27601 + g 79 -8.2 -4.56597 | opp_overlap 27577 27590 27589 AGGGCTGAAGGAACC GGCC CGC GGCC TTTTTGGCAACGGGC Rfer_4272 28818 - 28279 - | outer membrane lipoprotein TERM 19 28598 - 28612 + g 70 -4.2 -4.45544 | opp_overlap 28598 28589 28586 AGACCACCAATCAAA CCGC CAAATGC GCGG TTTTGATTGGTCGCC TERM 20 28842 - 28816 - G 72 -11 -3.36823 | opp_overlap 28806 28805, overlap 28839 CTTTTGAAAATTGAA CATCACTTTTCC TTT GGAAAAATGACG AAGCTCTGCCCTGAC TERM 21 28997 - 28954 - R 100 -14 -3.86897 | opp_overlap 28968, overlap 28955 28993 CTTACGCCGCAGAAA CCTGATTTGCCAAAGGGCTA CGAA TAGCCCTTTGGCAAATCCCC TCCCCGTGAAGGGAG TERM 22 28996 - 28955 - R 93 -17.5 -2.91924 | opp_overlap 28968, overlap 28954 28993 TTACGCCGCAGAAAC CTGATTTGCCAAAGGGCTA CGAA TAGCCCTTTGGCAAATCCC CTCCCCGTGAAGGGA TERM 23 29016 - 28993 - R 77 -11 -3.53224 | overlap 28955 28954 TAGCCCTTTGGCAAA TCCCCTCCCC GTGA AGGGAGGGAA ATGCGCAAATGAAGA TERM 24 29049 - 29080 + r 89 -8.8 -4.55287 | gap 1, opp_overlap 29057, overlap 29054 ACTAAATTCTTTCTC CTCAATCAGGCTGCC AAG GGCAGTCGGATT-AG TTTTCTCTCCATCAG TERM 25 29054 - 29076 + r 76 -9.8 -3.79162 | opp_overlap 29057, overlap 29049 ATTCTTTCTCCTCAA TCAGGCTGCC AAG GGCAGTCGGA TTAGTTTTCTCTCCA Rfer_4273 30907 - 29054 - | von Willebrand factor, type A TERM 26 29204 - 29176 - G 72 -11.8 -3.32993 | overlap 29172 TGAGTGACACACCAA TGCCAATGCCGA TAACT TCGACATCGGCA GATTCGAGGGCCCTG TERM 27 30603 - 30621 + g 72 -3 -4.79451 | ACGTCCTCCATACAT TGGCCCAC GAC GTCAGCCA TTTTGTATTTGGCGT Rfer_4274 32022 - 30916 - | hypothetical protein TERM 28 32081 - 32045 - R 80 -10.3 -3.90744 | gap 3, opp_overlap 32053 32056 32060 CCTTTCGGGAAAGAA GCGGAGCACACGCATCCC TTGC GGG-TG-GTGTGC-CCGC TGGGGTGATATTGAA TERM 29 32426 - 32411 - R 74 -10.4 -3.53224 | opp_overlap 32405 GACGGGTCGGGTAAA CAGCCC CGAA GGGCTG CTCCCCATTTCAAAC TERM 30 32610 - 32564 - R 70 -8.8 -3.6288 | opp_overlap 32595 32598, overlap 32567 32603 AAAGGAAGGTGGAAA CTAGCCGATTTCCAAAGTCTGC GAC ACAGAACTTGGAAATCAGCTCT CACCCCTTATGAGGG TERM 31 32607 - 32567 - R 86 -14.9 -2.92667 | opp_overlap 32595 32598, overlap 32564 32603 GGAAGGTGGAAACTA GCCGATTTCCAAAGTCTGC GAC ACAGAACTTGGAAATCAGC TCTCACCCCTTATGA TERM 32 32636 - 32603 - R 89 -13.3 -3.63305 | gap 1, opp_overlap 32595 32598, overlap 32567 32564 CACAGAACTTGGAAA TCAGCTCTCACCCCTT ATG AGGGGGTGAGAG-TGA TCAAGCTTTTAAGAG Rfer_4275 33019 - 32645 - | single-strand binding protein/primosomal replication protein n Rfer_4276 34111 - 33026 - | hypothetical protein Rfer_4277 34868 - 34152 - | hypothetical protein Rfer_4278 35770 - 34865 - | ATPase TERM 33 35753 - 35775 + g 73 -10.6 -3.62275 | opp_overlap 35752 35753 CGTGACCCCGTAAAT TGGAGGTGCA TCC TGCACCTCAA TTTGAACTGATGAGT Rfer_4279 36578 - 35772 - | hypothetical protein TERM 34 36500 - 36463 - G 93 -16.5 -3.55622 | opp_overlap 36470, overlap 36470 TTGAACCGTCGGAAA CAAAAAAGCCCCATCAC TGAC GTGATGAGGCTTTCCTG CTGAGGCTGCTTATT TERM 35 36470 - 36493 + g 80 -11 -3.78953 | opp_overlap 36463 36470 GTCGGAAACAAAAAA GCCCCATCAC TGAC GTGATGAGGC TTTCCTGCTGAGGCT TERM 36 36493 - 36470 - G 100 -13.2 -5.63517 | opp_overlap 36470, overlap 36463 GTCGGAAACAAAAAA GCCCCATCAC TGAC GTGATGAGGC TTTCCTGCTGAGGCT TERM 37 36501 - 36530 + g 84 -10.8 -4.14392 | overlap 36500 36502 GATGAGGCTTTCCTG CTGAGGCTGCTT ATTTCG AAGCAGCCTCAA TTTGTGTCTCAATGT TERM 38 36502 - 36529 + g 80 -14.3 -3.07912 | overlap 36500 36501 ATGAGGCTTTCCTGC TGAGGCTGCTT ATTTCG AAGCAGCCTCA ATTTGTGTCTCAATG TERM 39 36535 - 36566 + g 85 -6 -5.03314 | gap 1 AGCAGCCTCAATTTG TGTCTCAATGTTCGT GGA GCGAACACTGA-ACA TTTTTTCGGCATGAC TERM 40 36702 - 36736 + H 100 -13.7 -5.00616 | gap 1, opp_overlap 36692, overlap 36692 AATGACTTCCATGCT GACCA-GGCTGGAAGG TTTG CCTTCCAGGCGTGGTC TTTTTTGAAAACGGA TERM 41 36749 - 36766 + H 72 -4.1 -4.77036 | opp_overlap 36748 36749 36752, overlap 36750 GTCTTTTTTGAAAAC GGATGAC GAGA GTCATCG TTTTTGATAATCCGC TERM 42 37973 - 37959 - g 72 -2.7 -4.7629 | CTACGAAGTCAAAAA GCGTC TCGAG GCCGC CTCCACCAGTATTCG Rfer_4280 37411 - 38232 + | hypothetical protein TERM 43 38278 - 38303 + F 100 -13.3 -4.82154 | opp_overlap 38272 38282, overlap 38271 CTCTGACAAGGTCTT CAAAGGGGACC AATT GGTCCCCTTAG TTTTTGGTGTCGCTT TERM 44 38299 - 38282 - f 85 -12.7 -3.56099 | opp_overlap 38271 38278, overlap 38272 GACAAGGTCTTCAAA GGGGACC AATT GGTCCCC TTAGTTTTTGGTGTC TERM 45 39615 - 39625 + G 70 -3.2 -4.61231 | opp_overlap 39607 TTGAAGATAAGCCAT TGCT CAA GGCA TTTTTGCAGATCTGC Rfer_4281 38333 - 40153 + | UvrD/REP helicase Rfer_4282 40992 - 40150 - | hypothetical protein TERM 46 41017 - 40999 - R 78 -5.8 -4.73388 | opp_overlap 40999, overlap 41001 AAGTTGCATTAAAAA GTCGCGCC AGC GGCGCCCC TGATCTGGTCTTTTC Rfer_4283 41372 - 40992 - | hypothetical protein Rfer_4284 42421 - 41369 - | parB-like partition proteins Rfer_4285 43107 - 42418 - | ATPases involved in chromosome partitioning-like TERM 47 43239 - 43272 + r 80 -11.9 -3.41229 | AACTCAATTTTGACT GGTTTTGCGTATGAA CCGG TTCATACGCAAAGAC TTATGCTGACCCTCT TERM 48 44404 - 44419 + r 79 -3.2 -5.24129 | overlap 44383 GTCGGTTAAGGTCTG GCACTT TACC ATGTGC TTTTTTCTCAGGAAC Rfer_4286 45664 - 44702 - | hypothetical protein TERM 49 45701 - 45737 + r 86 -12.3 -3.86015 | opp_overlap 45708, overlap 45704 45708 TCACCCTTTGGGTGA CTTCAAAGGCTCCGAGT GCA AATCGGAGCCTTTGTCG TTTCTAGAGGCAGTC TERM 50 45704 - 45734 + r 100 -17 -3.00946 | opp_overlap 45708, overlap 45701 45708 CCCTTTGGGTGACTT CAAAGGCTCCGAGT GCA AATCGGAGCCTTTG TCGTTTCTAGAGGCA TERM 51 45730 - 45708 - R 81 -12 -3.59979 | opp_overlap 45704 45701 45708 TTGGGTGACTTCAAA GGCTCCGAGT GCA AATCGGAGCC TTTGTCGTTTCTAGA TERM 52 45708 - 45730 + r 91 -12 -4.17701 | opp_overlap 45708, overlap 45704 45701 TTGGGTGACTTCAAA GGCTCCGAGT GCA AATCGGAGCC TTTGTCGTTTCTAGA Rfer_4287 46561 - 45755 - | hypothetical protein TERM 53 47267 - 47241 - g 76 -9.6 -4.13343 | opp_overlap 47241 AGAAACGGTTCAAAA TATCGCTCAT GAAACAA ATGAGCGATA TTTCAGGATACAAGC Rfer_4288 46964 - 47899 + | hypothetical protein Rfer_4289 49184 - 47883 - | hypothetical protein TERM 54 48907 - 48917 + g 100 -2.4 -5.8096 | TGCGAATCCTTTTCA GGGG CCA CGCC TTTTTCTTTTTTCTG TERM 55 49329 - 49341 + r 73 -5.5 -4.63527 | overlap 49338 AAATCCGCCTAACAC GTGGG TAT CTCAC TTTTTAGAGTGATAA Rfer_4290 49705 - 49322 - | hypothetical protein TERM 56 50341 - 50325 - R 70 -2.9 -4.7254 | ATTCCGGACCAAAAA CGCCA CCCAATC CGGCG CAAAGAAGCCAGTCG Rfer_4292 52911 - 50599 - | hypothetical protein TERM 57 51341 - 51396 + g 81 -14 -3.28041 | gap 2 TTGCGGCTCCCCAAC GGCACCGGTCGGTCCCGCAAGCGGAG GCCGTA TTCCGTGCGCGGG-TCG-CCGGTGCC TTGATAGTTCGGCTT TERM 58 52728 - 52687 - G 70 -10.8 -3.53012 | gap 1, opp_overlap 52686 52685 52683 GTTCTTGCCGCCAAA CTCGA-ACAGCAGCGCCGC CTCCT GCGGCGTAGCGGTGTCGAG AGTCTTCTTGGCCTG Rfer_4293 53473 - 53159 - | hypothetical protein Rfer_4294 54591 - 53614 - | hypothetical protein TERM 59 55138 - 55168 + r 72 -3.8 -4.70659 | overlap 55141 GGCCCTGTTCGGCCT CAAGGCTCATGGCG CGC CGCCAGGAAACATG TTTTTAGGTATGGCA TERM 60 56352 - 56320 - R 100 -22.2 -5.86061 | opp_overlap 56320 GCGGACGAAAAAAAA CGCCCCAACACACT TCGAG AGTGTGTTGGGGCG TTTTACATTGATAGT TERM 61 56320 - 56352 + r 100 -22.9 -4.30416 | opp_overlap 56320 GCGGACGAAAAAAAA CGCCCCAACACACTT CGA GAGTGTGTTGGGGCG TTTTACATTGATAGT Rfer_4295 61549 - 56369 - | helicase-like TERM 62 60276 - 60293 + g 74 -4.1 -4.7373 | ATTTCAGTCCAGACG CCAACAA CAGC TTGTGGG TTTTTCATCCAGTAG TERM 63 60327 - 60348 + g 75 -2.9 -4.87273 | TTGACATTCTGTCCT TGGGTGTAG TTGC CTACTCGCA TTTTTGTGCCGTCTT TERM 64 61582 - 61608 + H 74 -10.1 -3.73107 | opp_overlap 61567 61581 61582 CGGAGACGCACCAAT CCCCGTCGGGA AGGCG TCCCGATAGGG TTTGACATTTCATGA TERM 65 61844 - 61822 - H 100 -12 -5.37593 | opp_overlap 61822 GGGGAAACGAAAAAA CCTCACTGGT CAG ACCCGTGAGG TTTTTCTTGATAAGC TERM 66 61822 - 61844 + H 100 -12 -5.1356 | opp_overlap 61822 GGGGAAACGAAAAAA CCTCACTGGT CAG ACCCGTGAGG TTTTTCTTGATAAGC TERM 67 62132 - 62156 + H 71 -6.3 -4.37658 | TTGGGGTTCACTTTT CGCACGGAATT TGT AGGTCCGGGCG TTTTATGCCAGAATT TERM 68 62274 - 62305 + H 76 -10.2 -3.72695 | gap 1, opp_overlap 62282 62285, overlap 62282 TTTGCGGATCCGGTA CAGGAAAGCCATCGC TAT GCGGTG-CTTTCCCG TTTCCTCGCAGCAAT TERM 69 62416 - 62385 - H 100 -15.9 -4.3586 | CGACTGACAGGAAAA CCGGGCCCGTGAG GTCAAA CTCACAAGCCCGG TCAGCATGTTGAGGT Rfer_4296 62530 - 63036 + | hypothetical protein TERM 70 63098 - 63132 + T 89 -13.7 -3.59979 | gap 1, opp_overlap 63100 63105 AATTTTTAACGTCAA CACTCAACG-ACCCAG ATCA CTGGGGGCGTTGAGTG TTTGGCATCGAGAAA TERM 71 63285 - 63247 - T 100 -22.5 -4.77173 | opp_overlap 63248, overlap 63248 GCGCCATAAAATAAA TCCCCCCAAGAGGCCCC TTACT GAGGCCTCTTGGGGGGT TTTTTTGCATTTTTA TERM 72 63284 - 63248 - T 100 -26 -3.45581 | opp_overlap 63248, overlap 63247 CGCCATAAAATAAAT CCCCCCAAGAGGCCCC TTACT GAGGCCTCTTGGGGGG TTTTTTTGCATTTTT TERM 73 63248 - 63284 + T 100 -23.8 -5.63857 | opp_overlap 63248 63247 CGCCATAAAATAAAT CCCCCCAAGAGGCCCC TTACT GAGGCCTCTTGGGGGG TTTTTTTGCATTTTT Rfer_4297 64077 - 63298 - | hypothetical protein Rfer_4298 64302 - 65669 + | DNA repair protein RadA Rfer_4299 66470 - 65685 - | hypothetical protein TERM 74 66596 - 66608 + r 75 -6.9 -4.42788 | TTCAGCACTAGCTCT GTGCC ATC GGCGC TTTTGTGAGCTTGAA Rfer_4300 66970 - 66731 - | hypothetical protein Rfer_4301 67007 - 67480 + | hypothetical protein TERM 75 67519 - 67534 + G 80 -10.4 -4.10566 | overlap 67509 TATGCCACCGGCAGC CACCCG AGCC CGGGTG TTTGTCTGGTGCTGT Rfer_4302 67477 - 67860 + | hypothetical protein TERM 76 67928 - 67954 + F 100 -16.7 -4.58395 | opp_overlap 67928 CGGCATATTAACCAA TGACAGGGACC CATGC GGTCCCTGTCA TTTTTGGAGAATCCA TERM 77 67954 - 67928 - f 100 -16.7 -3.43071 | opp_overlap 67928 CGGCATATTAACCAA TGACAGGGACC CATGC GGTCCCTGTCA TTTTTGGAGAATCCA Rfer_4303 67970 - 68641 + | hypothetical protein Rfer_4304 68619 - 68849 + | hypothetical protein TERM 78 69035 - 69061 + F 78 -12.3 -3.27907 | opp_overlap 69036, overlap 69031 69054 69060 TCATTACTAACCAGA AGCCCCAGATC ATCTC GATCTGGGGCA TTCCCTTGTGTCTGC TERM 79 69060 - 69036 - f 100 -16.5 -3.54743 | opp_overlap 69035 69031 69054 CATTACTAACCAGAA GCCCCAGATCA TCT CGATCTGGGGC ATTCCCTTGTGTCTG TERM 80 69558 - 69572 + G 73 -9.2 -3.97368 | opp_overlap 69545, overlap 69557 AACCGAGCGCAAGTT CGGCCG GGC CGGTCG TTTGTCGCTTGCAGA Rfer_4305 69272 - 70363 + | hypothetical protein TERM 81 70473 - 70492 + F 95 -5.7 -5.40072 | gap 1, opp_overlap 70471, overlap 70478 70478 AGCGACAACCACATG GACCACCC CAACC GGG-GGTC TTTTTTTCAACCAAC TERM 82 70478 - 70490 + F 71 -6.2 -4.34482 | opp_overlap 70471, overlap 70478 70473 CAACCACATGGACCA CCCC AACCG GGGG TCTTTTTTTCAACCA Rfer_4306 70522 - 70902 + | hypothetical protein TERM 83 71198 - 71160 - f 100 -14.7 -5.03314 | opp_overlap 71166, overlap 71146 71166 CTCAGTTTCAAAAAA CAGAAAGCCCCGTCCAA TTCAT TTGGACGGGGCTTTTTT GTTGCACTTTTGTGT TERM 84 71166 - 71192 + F 100 -18.1 -5.4756 | opp_overlap 71166 71160 TTCAAAAAACAGAAA GCCCCGTCCAA TTCAT TTGGACGGGGC TTTTTTGTTGCACTT TERM 85 71192 - 71166 - f 100 -18.1 -4.64992 | opp_overlap 71166, overlap 71160 TTCAAAAAACAGAAA GCCCCGTCCAA TTCAT TTGGACGGGGC TTTTTTGTTGCACTT TERM 86 71336 - 71308 - f 73 -10.2 -3.44146 | opp_overlap 71313 71320 CTCTCGCAGAAGGAA CCCGACCGGGAA TCACT CTCCCAGACGGG TCAGTGATTTTCCGG TERM 87 71313 - 71351 + F 80 -8.9 -4.07568 | gap 1, opp_overlap 71308, overlap 71320 GCAGAAGGAACCCGA CCGGG-AATCACTCTCCC AGAC GGGTCAGTGATTTTCCGG TTTTCCAAAAGGAAC TERM 88 71524 - 71499 - g 95 -12.5 -4.1899 | TGAGCTCATGCAAAA TGCTCGCCGCG CCGG CGCGACGCGCA TCGACTTCAACATTG Rfer_4307 71371 - 73266 + | hypothetical protein TERM 89 73344 - 73376 + G 86 -14.1 -3.54459 | overlap 73343 TGGTGAAGGGTTACC CCTCGCTGGAGGCTT TTG GAGCCACTGGCGAGG TTTGCACGCCCTTCC Rfer_4308 73274 - 73561 + | hypothetical protein TERM 90 73577 - 73538 - f 81 -8.5 -4.32067 | gap 1, overlap 73540 GATTTGAGAAAACAA CAGGACCCGGC-CGCCCC TTCCT GAGGCGAGCCAAGCCCTC AACAGAATCCATGCC TERM 91 73575 - 73540 - f 79 -11.1 -3.75581 | gap 1, overlap 73538 TTTGAGAAAACAACA GGACCCGGC-CGCCCC TTCCT GAGGCGAGCCAAGCCC TCAACAGAATCCATG TERM 92 73623 - 73582 - f 76 -12.3 -3.04322 | gap 1, opp_overlap 73587 73589 73610 73611, overlap 73585 GCCAAGCCCTCAACA GAATC-CATGCCTTCACCCC TTG GGGGTGGGGGCGTGTGATTC CCCAATCATCTCGCC TERM 93 73587 - 73617 + F 91 -17.6 -2.7185 | opp_overlap 73585 73582, overlap 73589 73610 73611 GCCCTCAACAGAATC CATGCCTTCACCCC TTG GGGGTGGGGGCGTG TGATTCCCCAATCAT TERM 94 73589 - 73615 + F 86 -14.4 -2.90392 | opp_overlap 73585 73582, overlap 73587 73610 73611 CCTCAACAGAATCCA TGCCTTCACCCC TTG GGGGTGGGGGCG TGTGATTCCCCAATC TERM 95 73716 - 73749 + F 71 -11.1 -2.94144 | gap 1, opp_overlap 73712 73746, overlap 73709 73713 73719 73721 CCTTTCAACCACCCA GAGGGTTTCATGACCC AAA GGGCCATG-AACTCTC TCATTTCACTGAGAA Rfer_4309 73770 - 73976 + | hypothetical protein TERM 96 74170 - 74125 - g 71 -5.3 -4.41895 | gap 1, overlap 74131 74132 AACGCTCAACGAAAA GATCAATCGCCGCGCAGGGGTC TCG GACCCCTGCA-AGCCCTGGGTC AACCCGGTGTGGAGC Rfer_4310 73982 - 74239 + | hypothetical protein Rfer_4311 74356 - 75492 + | DNA polymerase III, beta subunit TERM 97 75550 - 75594 + T 100 -15.9 -5.01732 | overlap 75556 TACTTGGCCCACGCG TCTGCATTGGACTGGCCTTTC CCA GAAAGGTCAGTCCAATTTTGA TTTTTTCAGAAGCTT TERM 98 75556 - 75588 + T 100 -20.1 -4.86862 | overlap 75550 GCCCACGCGTCTGCA TTGGACTGGCCTTTC CCA GAAAGGTCAGTCCAA TTTTGATTTTTTCAG TERM 99 75668 - 75649 - T 75 -6.4 -4.65916 | overlap 75650 GGCATGTCAACAAAA TCGCTGAT TTCG ATCAGCGC AGTGAAATCACCTTT TERM 100 75667 - 75650 - T 70 -9.9 -3.39068 | overlap 75649 GCATGTCAACAAAAT CGCTGAT TTCG ATCAGCG CAGTGAAATCACCTT TERM 101 75964 - 75999 + T 95 -11.1 -4.58685 | overlap 75967 CTCAAAAGCATTGAT GGATCGAGGCCCCGG CTAAAC CTGGGGTCTCGAATC TTTTTACCAAAGTTT TERM 102 75967 - 75996 + T 81 -13.6 -2.93708 | overlap 75964 AAAAGCATTGATGGA TCGAGGCCCCGG CTAAAC CTGGGGTCTCGA ATCTTTTTACCAAAG Rfer_4312 77245 - 76220 - | hypothetical protein TERM 103 78444 - 78419 - g 71 -9.7 -3.72576 | overlap 78436 CTGGCGCCCAGGAAA CCACCTCACTG AGAT CAGTGCGATGG TCGAACAGGAAGCGC Rfer_4313 77463 - 78539 + | hypothetical protein Rfer_4314 78601 - 79884 + | hypothetical protein Rfer_4315 79956 - 80411 + | hypothetical protein Rfer_4316 80426 - 80959 + | hypothetical protein Rfer_4317 81205 - 81600 + | hypothetical protein TERM 104 81863 - 81887 + G 100 -13.5 -4.38203 | opp_overlap 81863 81860, overlap 81864 AGCGAGGCTAAAGTA TGCCCTGGCGG TCA CCGCCATGGCG TTTCTTGCTTCTATC TERM 105 81864 - 81886 + G 82 -14.8 -3.21837 | opp_overlap 81863 81860, overlap 81863 GCGAGGCTAAAGTAT GCCCTGGCGG TCA CCGCCATGGC GTTTCTTGCTTCTAT Rfer_4318 81621 - 82913 + | hypothetical protein TERM 106 83260 - 83213 - g 82 -12 -3.96068 | overlap 83214 83257 CTATGCGAAGAACAA GCGATCTTCTGACCGCGAGG CCGATGCC CCTCGCGGTCAGACCACCGG TGACCGCGCATCGTG TERM 107 83259 - 83214 - g 81 -15.5 -2.97158 | overlap 83213 83257 TATGCGAAGAACAAG CGATCTTCTGACCGCGAGG CCGATGCC CCTCGCGGTCAGACCACCG GTGACCGCGCATCGT Rfer_4319 83034 - 83981 + | DNA/RNA non-specific endonuclease Rfer_4320 83968 - 84255 + | hypothetical protein TERM 108 84442 - 84432 - g 74 -5.4 -4.46112 | overlap 84428 GTGGAGGCAAACAAA GTGT CCC ACAC CTCGATCCATCAAGG Rfer_4321 84348 - 85040 + | hypothetical protein TERM 109 85094 - 85132 + T 80 -9.5 -3.9243 | gap 1, opp_overlap 85096, overlap 85096 GTGACACCAAAAAAA AAGCCCCGCCACTGACCT TTTC AGGACAGCG-CGGGGCTA TTGTTTCAAAACTTG TERM 110 85130 - 85096 - T 100 -14.3 -6.19443 | gap 1, opp_overlap 85096 85094 GACACCAAAAAAAAA GCCCCGCCACTGACCT TTTC AGGACAGCG-CGGGGC TATTGTTTCAAAACT TERM 111 85096 - 85130 + T 81 -12.1 -3.54755 | gap 1, opp_overlap 85096, overlap 85094 GACACCAAAAAAAAA GCCCCGCCACTGACCT TTTC AGGACAGCG-CGGGGC TATTGTTTCAAAACT Rfer_4322 86184 - 85138 - | hypothetical protein TERM 112 85592 - 85604 + g 71 -9.1 -3.73072 | AACGTTTCGTACTTG GCCCT TGA AGGGC TTTCCTCCGCGCGTT TERM 113 86245 - 86213 - R 100 -24.3 -5.18355 | overlap 86181 TTGAAAAATGAAAAA GCACTGGCAAACCCC AAG GGGGTCTGCCAGTGC GCATGGTCAGCTTTG Rfer_4323 87078 - 86275 - | hypothetical protein TERM 114 86789 - 86804 + g 100 -6.1 -5.75342 | ACCCTGGAGGCCGTG CCTGG GATGAA CCAGG TTTTTTTTGAAGCCG Rfer_4324 87740 - 87333 - | hypothetical protein TERM 115 87377 - 87404 + g 79 -9.2 -4.15044 | gap 1 GCTTGGCTCTGATCT GATGCACGAGCTC AGC GAGCGCGT-CATC TTTATTCAAGCGGCC Rfer_4325 87858 - 88163 + | hypothetical protein Rfer_4326 88427 - 88140 - | hypothetical protein TERM 116 88673 - 88654 - H 80 -9.2 -4.0896 | overlap 88642 AAATTCGCCTGAAAA GTCCAGGG GAAG CCCTGGCC AATGGGGTATTCGCC TERM 117 89674 - 89693 + G 83 -5 -5.15381 | gap 1, overlap 89639 TTTGCCGAAGACGTC GCGCTTCTG CCT CA-AGGCGC TTTTTTGGGTCTGTT TERM 118 90165 - 90154 - g 88 -2.2 -5.46698 | GTCAAAACCAAAAAA GACT TCTT AGCC CTGGACCGCCACAGC Rfer_4327 88990 - 92502 + | hypothetical protein Rfer_4328 93786 - 92545 - | phage integrase Rfer_4329 94127 - 93783 - | hypothetical protein Rfer_4330 94801 - 95265 + | hypothetical protein Rfer_4331 95258 - 95554 + | hypothetical protein Rfer_4332 95673 - 95945 + | hypothetical protein TERM 119 95961 - 95981 + F 72 -11.9 -2.75382 | opp_overlap 95953 95950, overlap 95958 TCAATCACCCTGCGG GTTTTGCCC GTC GGGCAGAAC TCATTGGGTCAAATC Rfer_4333 96011 - 96949 + | hypothetical protein TERM 120 97032 - 97010 - f 71 -10.5 -3.24021 | opp_overlap 97009 97014 CGCTGAAATACTTAA CCCGCTGGG ACTCG CCCAGTGGG CGTTGTCTCAGTTTT TERM 121 97014 - 97043 + F 90 -10.7 -4.24002 | gap 1, opp_overlap 97010, overlap 97009 GAAATACTTAACCCG CTGGGAC-TCGCCC AGT GGGCGTTGTCTCAG TTTTCAAATTTGAGG TERM 122 98613 - 98582 - g 77 -10.9 -3.62046 | gap 1, overlap 98584 CGACTGCTGGAACAA CACCGGCAGGGC GTCGGGTCG GCCCTGCCGG-G ATCGATCACGCATGG TERM 123 98612 - 98584 - g 86 -14.6 -3.38991 | overlap 98582 ACTGCTGGAACAACA CCGGCAGGGC GTCGGGTCG GCCCTGCCGG GATCGATCACGCATG Rfer_4334 97067 - 98863 + | hypothetical protein TERM 124 98912 - 98948 + T 100 -19.5 -5.63517 | opp_overlap 98912 ATTTTCAAAATTAAA CCCCCGGAGGCTGAC CCATAAA GTCGGCTTCCGGGGG TTTTTTATTTGGGGC TERM 125 98948 - 98912 - T 100 -16.5 -4.20136 | opp_overlap 98912 ATTTTCAAAATTAAA CCCCCGGAGGCTGACCC ATA AAGTCGGCTTCCGGGGG TTTTTTATTTGGGGC Rfer_4335 99469 - 99086 - | hypothetical protein Rfer_4336 99566 - 100738 + | hypothetical protein TERM 126 100951 - 100968 + G 74 -5.5 -4.5442 | GATGGTCATTTGTTT TTGCGGG GGTC CCCACAA TTTTCTGATTGCCCA TERM 127 101461 - 101475 + G 78 -2.8 -5.15117 | opp_overlap 101450 AAATGCGTCCAGCGA CTCTGA AGA TCACAG TTTTTTAAGCTTTTG Rfer_4337 100841 - 101740 + | methyltransferase type 11 Rfer_4338 102436 - 101801 - | hypothetical protein Rfer_4339 103698 - 102457 - | hypothetical protein TERM 128 103242 - 103259 + g 80 -3.3 -5.02476 | CACCGAGATCCTTGG CGGCGGT CCAG ATCGGCG TTTTTTGCAACGTGT TERM 129 104154 - 104135 - g 73 -4.2 -4.72272 | gap 1, overlap 104136 CGTGGTCATCAAAAA CGTGCTGGG CAA CCC-GCACT GAAACCCAAAACAGA TERM 130 104197 - 104166 - g 100 -13 -4.36595 | opp_overlap 104182 104187, overlap 104168 CACTGAAACCCAAAA CAGATCCACCAGCC GTTC GGCTGGTGGATCAT CAACCAATTGCTTGC TERM 131 104195 - 104168 - g 100 -20 -3.78026 | opp_overlap 104182 104187, overlap 104166 CTGAAACCCAAAACA GATCCACCAGCC GTTC GGCTGGTGGATC ATCAACCAATTGCTT Rfer_4340 104090 - 104752 + | hypothetical protein TERM 132 104902 - 104931 + T 100 -16.4 -4.61566 | opp_overlap 104898 104896 104895 TTTCAAAACCATCGA CCCCCGGTTGCC TCAGTT GGCATCCGGGGG TTTTGTCGTTTGGGG Rfer_4341 106386 - 105088 - | DNA-directed DNA polymerase TERM 133 106236 - 106249 + g 70 -3.1 -4.63527 | overlap 106206 106237 ACCAAGGCTCGCCCA TCTTG ATTC CAAGG TTTTTAGCCTCATCG Rfer_4342 106833 - 106393 - | putative prophage repressor TERM 134 106745 - 106759 + g 70 -4.2 -4.56597 | GCTGGTGACGGGAAG CCGG CGCAGAC CCGG TTTTTAAGCAGCAAC Rfer_4343 106926 - 107291 + | hypothetical protein Rfer_4344 107296 - 107943 + | hypothetical protein TERM 135 108679 - 108668 - g 71 -7.2 -4.24342 | overlap 108669 TGCGCTATGAAGAAA CGCC CAAT GGCG CCCAACTGATGGAGT Rfer_4345 108460 - 109533 + | hypothetical protein Rfer_4346 109560 - 109991 + | hypothetical protein TERM 136 110388 - 110352 - g 72 -2.1 -4.84311 | opp_overlap 110386, overlap 110354 GCGCACAGAAGAAAA GTTGGGATCGGCGAACA CAA TGTCCTTCAATCCCCGC GCAACGCGGGGCGCA TERM 137 110709 - 110693 - g 90 -15.1 -3.53012 | CTGCCCTCCTTCAAA CCCCGCG CAA CGCGGGG CGCACCGTGGCCAAG Rfer_4347 109994 - 110746 + | hypothetical protein Rfer_4348 112200 - 111367 - | CRISPR-associated Cas1 family protein Rfer_4349 112822 - 112280 - | hypothetical protein Rfer_4350 113490 - 112810 - | hypothetical protein TERM 138 113503 - 113526 + r 70 -3.1 -4.79667 | overlap 113508 CATATCACGCCTCGC TGGTAGCCA CTTCTT TGGCTTTCA TTTTTGGTGCCTTTT Rfer_4351 114610 - 113492 - | hypothetical protein Rfer_4352 114690 - 115358 + | hypothetical protein TERM 139 116137 - 116157 + G 71 -9.6 -3.76641 | CATCCAGGTTCTCCC CCTGGCGC CGGGT GCGCCTGG TTTGCCTGTTGAAGT Rfer_4353 115481 - 116182 + | hypothetical protein TERM 140 116546 - 116564 + G 76 -9.5 -4.14243 | TCTGAAACTGGGCCA GCGCGGC GAACA GTCGCGC TTTTACGCTGGGCTG Rfer_4354 116184 - 118625 + | DEAD/DEAH box helicase-like Rfer_4355 118658 - 119269 + | hypothetical protein TERM 141 119316 - 119301 - T 73 -6.1 -4.42386 | CCCGCATTGATAAAA GGACG TCCCTG CGTCC TTGCGGGCCTCACTG Rfer_4356 120860 - 119343 - | hypothetical protein TERM 142 120879 - 120893 + H 71 -4.2 -4.65916 | GATAAGTTTACTCTA TGGCAC GAT GTGACA TTTTCTTGCCATAGA Rfer_4357 121369 - 121902 + | hypothetical protein TERM 143 122053 - 122077 + T 100 -17.9 -3.92592 | opp_overlap 122053 AGGGGCGAAAAAAAA CCCACCGACGC ATG GCGTTGGTGGG TTTGATCTTAAAAAT TERM 144 122077 - 122053 - T 100 -15.7 -5.75945 | opp_overlap 122053 AGGGGCGAAAAAAAA CCCACCGACGC ATG GCGTTGGTGGG TTTGATCTTAAAAAT Rfer_4358 123726 - 122104 - | hypothetical protein TERM 145 123699 - 123718 + g 74 -6.4 -4.36485 | overlap 123692 123691 123693 CGCTGTTGGCCCGTG CATCGGGC ATTG GTCTGATG TTTTCCATATTTTCT TERM 146 123781 - 123750 - R 100 -16.6 -4.4078 | gap 1 CGGTGGTAATGAAAA CGGGACCACCAGCCC AAC GGGA-GGTGGTCCCG TTGGGATTGAAAATT Rfer_4359 124761 - 123865 - | hypothetical protein TERM 147 124778 - 124794 + r 70 -5.1 -4.4831 | overlap 124764 CGCCATCTGTGGAGG CAAAGAG GCT CTCTTGG TTGTTTTTGATGGCT Rfer_4360 125391 - 124864 - | hypothetical protein TERM 148 125447 - 125410 - R 80 -9.4 -4.17316 | opp_overlap 125416 125422 ATGGCTCCAAAATAA TGGG-AACTCACTTTCCC CATC GGGAAA-CGAGTTTCCCA GTGGGTGAGTAATTC TERM 149 125705 - 125673 - R 100 -12.8 -5.30155 | gap 1, opp_overlap 125673 TCACCAACGAAAAAA GCCCACCGGCAACCT GGTG AGGCTGC-AGTGGGC TTTTTTGTTTTGAAA TERM 150 125673 - 125705 + r 100 -8.4 -5.79595 | gap 1, opp_overlap 125673 TCACCAACGAAAAAA GCCCACCGGCAACCT GGTG AGGCTGCAG-TGGGC TTTTTTGTTTTGAAA Rfer_4361 126975 - 125746 - | ATP dependent DNA ligase TERM 151 126901 - 126939 + g 71 -8.1 -4.00445 | gap 1, opp_overlap 126901 TTTCTCGAAAGGAAA GAGCGCTCCGCACCCAGC AGAA GCTGG-TGGATAGCGCTC TTGTTGTTGATGATG TERM 152 126939 - 126901 - G 80 -10.3 -4.05788 | gap 1, opp_overlap 126901 TTTCTCGAAAGGAAA GAGCGCTCCGCACCCAGC AGAA GCTGG-TGGATAGCGCTC TTGTTGTTGATGATG Rfer_4362 128556 - 126994 - | hypothetical protein TERM 153 127035 - 127051 + g 81 -4.4 -4.87626 | gap 1, overlap 127035 GGAGATCCACAGCCT GG-GCCA CCGG TGGCGCC TTTTTGCTGTTGAGG TERM 154 127612 - 127593 - G 75 -13.6 -2.87132 | CCCTGGCCGTATAGA CCTCACCG GTGG CGGTGAGG GTCTCCAGCATGGGG TERM 155 128606 - 128583 - R 95 -14.6 -3.60792 | opp_overlap 128588 CCGTGAATCGGGAAA TACCGCCCCC ACAG GGGAGCGGTA CCCCGGTGGTGGTTT TERM 156 128588 - 128618 + r 83 -9.6 -4.20918 | opp_overlap 128583 AATCGGGAAATACCG CCCCCACAGGGG AGCGGTA CCCCGGTGGTGG TTTGTTCGCCTTGCG TERM 157 128727 - 128686 - R 100 -10.7 -5.93252 | opp_overlap 128701 128702 128716 GCCAAAAACAAAAAA GCCACCAAAACCCCGGCGC GTGA GCGCGTTGGTCATGGTGGC CTATTGCGAATCCGA TERM 158 128936 - 128963 + r 95 -12.8 -4.1196 | opp_overlap 128923 128935 128932, overlap 128937 AACCGTAGAAATCAG GTCCCGAAGGAA ATGA TTCCTTCGGGAA TTTTGACAATGAATT TERM 159 128937 - 128962 + r 100 -16.3 -3.06694 | opp_overlap 128923 128935 128932, overlap 128936 ACCGTAGAAATCAGG TCCCGAAGGAA ATGA TTCCTTCGGGA ATTTTGACAATGAAT Rfer_4363 130270 - 129083 - | hypothetical protein Rfer_4364 131094 - 130390 - | hypothetical protein TERM 160 130608 - 130623 + g 78 -4.7 -4.82998 | CGAACGGGACTGGGG GACGA CCTGGA TCGTC TTTGTTTTCGTTTCC TERM 161 130925 - 130949 + g 93 -11.4 -4.39989 | opp_overlap 130917, overlap 130927 AGCAAAGCGTGATCA GTCTGGCTCC AGTGC GGAGCCAGCC TTTTGATGATTTGCT TERM 162 131140 - 131111 - R 100 -20.1 -5.12707 | opp_overlap 131122, overlap 131101 TTAAAGTCCAAAAAA GGGACTCACGCCC CTTC GGGCATGAGTCCC GAAGGGTTGATGATG TERM 163 131122 - 131146 + r 83 -12.9 -3.23984 | opp_overlap 131111 AAAAGGGACTCACGC CCCTTCGGG CATGAGT CCCGAAGGG TTGATGATGGATTTG Rfer_4365 132018 - 131293 - | hypothetical protein TERM 164 131585 - 131600 + g 71 -9 -3.74693 | overlap 131589 GTCAGCGTCCAGTCC TGGTGG GTGA CCACCA TTTGGTGGGGTCCCC TERM 165 131898 - 131908 + g 72 -2.4 -4.86731 | CGCGCCAGGTGTTGG CGGG AAA CCGG TTTTGTTTCAGAAAC Rfer_4366 132621 - 132097 - | hypothetical protein TERM 166 132969 - 132934 - R 100 -10.4 -5.81032 | gap 1, opp_overlap 132933 132932 GAAGTCCAAAAAAAA CCCCCACAGCCGTCC TTTGAGG GGATGGC-GCGGGGG CAATTTTGTTATTGA Rfer_4367 133736 - 133029 - | hypothetical protein TERM 167 133834 - 133809 - R 81 -12.5 -3.05384 | opp_overlap 133808 133807 GCTGTGGTTATTGAA GCCACCCGGCC GTAA GGCAAGGTGGC AGTTCGTGTGCAGAT Rfer_4368 134728 - 133883 - | hypothetical protein TERM 168 134768 - 134798 + r 81 -11.8 -3.59738 | opp_overlap 134766, overlap 134767 ATAGAGACACACAGC CCCCCAATGGGGCG TTG CATCCCATTGGGCG TTTGAAAGTGTGATG Rfer_4369 135675 - 135151 - | hypothetical protein Rfer_4370 137546 - 135792 - | hypothetical protein Rfer_4371 137970 - 137665 - | hypothetical protein TERM 169 138182 - 138157 - R 100 -6.9 -5.79526 | gap 1, opp_overlap 138156 138157 ACATGCGAAAAAAAA CCCATCGCGC TTGAGTT GCG-GATGGG GTTTCTTCATTGGGG Rfer_4372 138512 - 138249 - | hypothetical protein Rfer_4373 138931 - 138566 - | hypothetical protein TERM 170 139042 - 138994 - R 100 -17.5 -3.30771 | opp_overlap 139032, overlap 138997 139031 139036 GCAGAGCGTGGATAA CCACGGGTTCCCTGAGTTCACGC GTT GAATGAACTCAGGGAACCCGCCT TCAGCGTGAGCTGCA TERM 171 139039 - 138997 - R 100 -25.8 -2.8294 | opp_overlap 139032, overlap 138994 139031 139036 GAGCGTGGATAACCA CGGGTTCCCTGAGTTCACGC GTT GAATGAACTCAGGGAACCCG CCTTCAGCGTGAGCT TERM 172 139032 - 139066 + r 100 -9.3 -5.12707 | gap 1, opp_overlap 138997 138994 139031 139036 GTTGAATGAACTCAG GGAACCCGCCTTCAGC GTGA GCTGCAGGAG-GTTCC TTTTTTGAAATTTAA Rfer_4374 140463 - 139123 - | hypothetical protein TERM 173 139598 - 139616 + g 71 -8.8 -3.76759 | overlap 139599 ACATGGGCGACATCC TGCTCGGC GTA GCTGAGCG TTTGGTGCAATTCAT TERM 174 139893 - 139907 + g 73 -10 -3.66874 | TGCCAAGAGTCAGTG CCAAGG CCT CCTTGG TTTGCGTCACGTTGA TERM 175 140030 - 140045 + g 70 -4.6 -4.4767 | opp_overlap 140031, overlap 140031 TAGGCGCTAACGAAA TGGTGG TCGT CCGCCG TTTTGTACTCGATGG Rfer_4375 140969 - 140460 - | hypothetical protein TERM 176 140989 - 141033 + r 86 -15.8 -2.78596 | TGAAGGGCACGAGGC CGTTTTCCCCAAGCCGAATG GGGTG CAAGGGGCTTGGGGAAAACG TCTGGTAGGGGAATG TERM 177 141098 - 141054 - R 100 -15.3 -3.8186 | gap 3, overlap 141056 TAGGGGAATGAAGAA GA-TCGCGCTTCCCGCAAGCAC CGAT GTGCT-GCGGGAAG-GCGAATC AGGCCGGTCTGGGAT TERM 178 141095 - 141056 - R 100 -18.1 -3.49048 | gap 2, overlap 141054 GGGGAATGAAGAAGA TCGCGCTTCCCGCAAGCAC CGAT GTGCT-GCGGGAAG-GCGA ATCAGGCCGGTCTGG Rfer_4376 141982 - 141113 - | hypothetical protein TERM 179 142308 - 142285 - R 100 -11 -4.73108 | opp_overlap 142285 142284 GCCACAAAAGGAAAA GCCGCCAAGA TTTC TCCTAGCGGC CTTCGTTCCCAATTT TERM 180 142430 - 142453 + r 86 -9.6 -4.28774 | opp_overlap 142430 142433 CGACAGAATTTGAAA CAAGCACATC TTTC GATGCGCTTG TTTTAGGTTGGGTGA TERM 181 142453 - 142430 - R 83 -11.8 -3.70811 | opp_overlap 142430, overlap 142433 CGACAGAATTTGAAA CAAGCACATC TTTC GATGCGCTTG TTTTAGGTTGGGTGA TERM 182 142450 - 142433 - R 71 -7.7 -3.97689 | opp_overlap 142430, overlap 142430 CAGAATTTGAAACAA GCACATC TTTC GATGCGC TTGTTTTAGGTTGGG TERM 183 142618 - 142632 + r 76 -3.4 -5.06414 | overlap 142608 TGCCTCAGTGCGCAA GCGTTG TTC CGTCGC TTTTTCTTAGGACAA Rfer_4377 143130 - 142639 - | hypothetical protein TERM 184 142966 - 142997 + g 81 -13.7 -3.34895 | opp_overlap 142954 142958, overlap 142967 142969 GAACCCACATGCTGA CCAGGCCTGTGGG GGTGAG CCCACGGGCCTGA TTCCTTGACAATAAA TERM 185 142967 - 142996 + g 83 -17.2 -2.60723 | opp_overlap 142954 142958, overlap 142966 142969 AACCCACATGCTGAC CAGGCCTGTGGG GGTGAG CCCACGGGCCTG ATTCCTTGACAATAA TERM 186 142969 - 142994 + g 75 -14 -2.84276 | opp_overlap 142954 142958, overlap 142967 142966 CCCACATGCTGACCA GGCCTGTGGG GGTGAG CCCACGGGCC TGATTCCTTGACAAT TERM 187 143014 - 143028 + g 70 -3.5 -4.68103 | TCCTTGACAATAAAA GCGGT AATTA ATCGC TTTTCTTGAAATTCC Rfer_4378 143238 - 143516 + | hypothetical protein Rfer_4379 144132 - 143560 - | ERCC4 TERM 188 143623 - 143645 + g 100 -10.6 -5.14563 | CCACCAGTACGTGTA CAGCTTGCTG AGC CAGGAAGCTG TTTTTTCCTCCGCCA TERM 189 144251 - 144230 - R 91 -10.1 -4.62872 | overlap 144234 ATCAAGTGGCAAAAA CAAAGCCCG AATG CGGGCCTCG ACGTGTACCGGCAAC TERM 190 144247 - 144234 - R 100 -9.5 -4.86385 | overlap 144230 AGTGGCAAAAACAAA GCCCG AATG CGGGC CTCGACGTGTACCGG Rfer_4380 145702 - 144560 - | hypothetical protein TERM 191 144796 - 144816 + g 77 -4 -5.00884 | gap 1 CCATCATGCGAACCA TCGCGTAGC CTTC GCTGC-CGA TTTTTTGGGCGACCT Rfer_4381 147485 - 145716 - | ankyrin TERM 192 146916 - 146887 - G 70 -4.3 -4.56597 | gap 1, overlap 146890 146891 GTGGGGGCGTAAAAA CGA-TTGGACATCC TCC GGACATCCAGCTCG TACATCTTGGCAACC Rfer_4382 147936 - 147688 - | hypothetical protein Rfer_4383 149041 - 147998 - | hypothetical protein TERM 193 148734 - 148701 - G 72 -11.7 -3.34398 | gap 1, opp_overlap 148704 148705 148725, overlap 148699 GCGTGGGCGTAAATA TCGCGCAGCATGCGCC AGT AGCGC-CGCTGCGTGA CGGTGCTGGCTGGGC Rfer_4384 149537 - 149055 - | hypothetical protein Rfer_4385 150192 - 149599 - | thymidine kinase TERM 194 149870 - 149848 - G 74 -6.2 -4.56597 | GGGGTGCCCTAAAAA GTCGCTGCGA AGG CCGTAGCAAC GGATGGGCACTTGGC Rfer_4386 150718 - 150927 + | hypothetical protein TERM 195 151656 - 151638 - g 70 -5.2 -4.57569 | overlap 151641 CGATGGCTTCAAAAA GACCGG CAAGGAC CCGGCC GCCTTTCTTGGCCAG TERM 196 152143 - 152169 + G 73 -9.5 -3.86916 | gap 1, overlap 152144 GTGCGCCAGACGGAC TTCATCAGCCGC CTCA GCGGC-GATGAG TTTGCTGTCATCCTG TERM 197 152583 - 152571 - g 70 -3.3 -4.64598 | opp_overlap 152562 152580, overlap 152562 GAATCATCCCAAAAA CGGGA TCA TCTCG CCCGGTGAGTTTCAG Rfer_4387 151078 - 153234 + | diguanylate cyclase/phosphodiesterase Rfer_4388 153955 - 153374 - | hypothetical protein Rfer_4389 154743 - 153952 - | hypothetical protein Rfer_4390 155263 - 154745 - | hypothetical protein Rfer_4391 156188 - 155283 - | hypothetical protein Rfer_4392 159377 - 156228 - | hypothetical protein TERM 198 157154 - 157176 + g 75 -7.6 -4.20516 | opp_overlap 157154 TTGCTGCGTGTAACA CCTGGTTGCC GTT GGCTGTCAGG TTTGTTGAATCCCAA TERM 199 158897 - 158877 - G 78 -13.3 -3.12668 | overlap 158869 TTGCAAACCGGAATA GGCGACGAC GAT ATCGTCGCC CTGCGCCGGCAGACC Rfer_4393 159942 - 159397 - | hypothetical protein Rfer_4394 160436 - 159939 - | hypothetical protein TERM 200 160184 - 160203 + g 78 -6.4 -4.64861 | opp_overlap 160177 160184 TCACTGAATCATCAA TGGCATCG ATGC CAATGCCA TTTATTTTCACCAAC TERM 201 160634 - 160619 - R 80 -11.8 -3.37466 | overlap 160617 160629 160630 ATGCCAGAGAGAACA GGCGGC AAAA GCCGCC GTCGCGGAATGATTA Rfer_4395 161294 - 160647 - | hypothetical protein Rfer_4396 162160 - 161336 - | hypothetical protein Rfer_4397 162567 - 162190 - | hypothetical protein Rfer_4398 163576 - 162641 - | hypothetical protein Rfer_4399 164833 - 163577 - | type II secretion system protein Rfer_4400 166557 - 164830 - | type II secretion system protein E TERM 202 166425 - 166376 - G 80 -10.7 -4.11216 | opp_overlap 166381 166392 GCGCGATCGGCAAAA CGCAACTCGTGCAGAATTTCGCC GATT GGCGTAATTCTTCCGGAGTTTCG CCATACCCGTTGTTG Rfer_4401 167258 - 166554 - | hypothetical protein TERM 203 167123 - 167155 + g 74 -4 -4.82901 | gap 1, overlap 167125 167125 TTGGTGACGGACCGC CTGGGG-GCATTGGC GTTA GCGACTGCGCCCCTG TTTTTGTACCGCGCG Rfer_4402 169119 - 167251 - | type II and III secretion system protein TERM 204 168715 - 168699 - G 73 -5.1 -4.61231 | CCATACCCGCAAAAA CATCTTC ATT GACGATG GGCGGCAGGGAAACC Rfer_4403 170647 - 169220 - | Type II secretory pathway component PulD-like Rfer_4404 172194 - 171208 - | response regulator receiver domain-containing protein TERM 205 172360 - 172312 - R 100 -16.9 -3.5764 | gap 1, opp_overlap 172329 172332 172353 172356, overlap 172313 AATTCGAGTCGGAAA CGGGATTGACCAAGCG-TCCTC GGATCA GAGGTTCGCTTGGTCAATCCCC CTGACCGCGCAAGGC TERM 206 172359 - 172313 - R 100 -20.4 -2.74263 | gap 1, opp_overlap 172329 172332 172353 172356, overlap 172312 ATTCGAGTCGGAAAC GGGATTGACCAAGCG-TCCTC GGATCA GAGGTTCGCTTGGTCAATCCC CCTGACCGCGCAAGG TERM 207 172353 - 172389 + r 100 -16.6 -3.09581 | opp_overlap 172313 172312, overlap 172356 AGAGGTTCGCTTGGT CAATCCCCCTGACCGC GCAAG GCGGCCAGGGGAATTG TGTCTTGCCACTTTA TERM 208 172356 - 172386 + r 86 -12.5 -3.68292 | opp_overlap 172313 172312, overlap 172353 GGTTCGCTTGGTCAA TCCCCCTGACCGC GCAAG GCGGCCAGGGGAA TTGTGTCTTGCCACT Rfer_4405 173319 - 172522 - | UBA/THIF-type NAD/FAD binding fold Rfer_4406 173945 - 173316 - | hypothetical protein TERM 209 173979 - 174008 + r 78 -6.3 -4.7373 | opp_overlap 173971 173975, overlap 173981 173982 AATGCAAGGTAGACG CGACCCATGGGGA CGTA TCCCCATGGCGGG TTTTTGATAGGCTGC Rfer_4407 174861 - 174136 - | hypothetical protein TERM 210 174643 - 174690 + g 95 -12.6 -4.15044 | opp_overlap 174636, overlap 174672 CCACACCAGATCGCT GATCCCCTGCTGGCGGGCCAAC TGGC GTAGGGCTGCCATCAGGGAGTC TTTCTTGAGCGCACG Rfer_4408 175920 - 174871 - | hypothetical protein Rfer_4409 176345 - 175920 - | hypothetical protein TERM 211 176080 - 176093 + g 78 -2.4 -5.06816 | CCCGGGACCTTGATA TTGG CGAGTT CCAA TTTTTCTTCAGCCGT TERM 212 176389 - 176402 + r 71 -9.5 -3.59979 | opp_overlap 176378 AGAACAGTTCGTCAG CGCCC ATGG GGGCG TTTGACGTGACCGAG Rfer_4410 176881 - 176372 - | hypothetical protein TERM 213 176432 - 176450 + g 82 -11 -3.96298 | GAGCGGAAGAACCGG TGTTGGCG TCG CGCCAGCA TTTGATTCATCGCTA TERM 214 176907 - 176932 + r 71 -10.3 -3.20382 | opp_overlap 176907 TTGAAATGAAACAAA GACCCGGCAGC TCGC GCCGCGGGGTC TTGATAGGTGTCAGC TERM 215 176932 - 176907 - R 100 -12.5 -4.62772 | opp_overlap 176907 TTGAAATGAAACAAA GACCCGGCAGC TCGC GCCGCGGGGTC TTGATAGGTGTCAGC Rfer_4411 177462 - 176995 - | hypothetical protein TERM 216 177034 - 177045 + g 83 -3 -5.18357 | overlap 177040 CTTTCGCTGTTTGTC TTCT TCCC AGAA TTTTTTGGTGGCTTC TERM 217 177161 - 177135 - G 76 -9.4 -4.09685 | overlap 177136 177139 GTTTATCTGCCAAAA CCGATCCCGCCA GGA TGGCGGAATAGA TCACGAGTCCGGCGA TERM 218 177425 - 177390 - G 72 -14 -2.62184 | overlap 177400 CCTGCTTGCATAGGA CTGCGACAGACCCCTC AGTG GAGGGCCCTCTCGCAG CCCCATGCGGGGTCC TERM 219 177444 - 177486 + g 100 -9.8 -5.0925 | opp_overlap 177459, overlap 177445 CATGCGGGGTCCTGC GCCATTTGCAGAGTACCACT GGA AGTGGTACCCAGCAGCTGGA TTTTTACTTTTCGAA TERM 220 177445 - 177485 + g 88 -13.3 -3.64465 | opp_overlap 177459, overlap 177444 ATGCGGGGTCCTGCG CCATTTGCAGAGTACCACT GGA AGTGGTACCCAGCAGCTGG ATTTTTACTTTTCGA Rfer_4412 179232 - 177490 - | parB-like partition proteins TERM 221 178154 - 178186 + g 79 -7.6 -4.50976 | gap 1, overlap 178159 GAGCCTTCAACGGGT GGCGTGCCGGGGCCG GCAG CAGCCCCGG-ATGGC TTTTCTGCTGTGGGA TERM 222 178468 - 178484 + g 72 -2.1 -4.77165 | overlap 178470 TTTGTCGACCGTCAA CTGAAGC TGG GCCTCTG TTTTATTGTCGAAGC TERM 223 179271 - 179256 - R 73 -9 -3.83026 | opp_overlap 179256 TTCTTTGATATGAAA TCAGCC GAAC GGCTGA TTGAATGCAATCGTT Rfer_4413 181178 - 179481 - | response regulator receiver sensor signal transduction histidine kinase TERM 224 179619 - 179607 - G 71 -7.7 -4.07975 | overlap 179600 CAATTGAATGACAAA GGTTG TCC CAACC CCAACCTCGGAACTG Rfer_4414 182695 - 181175 - | periplasmic sensor signal transduction histidine kinase TERM 225 182310 - 182261 - G 76 -10.8 -3.74077 | overlap 182263 182266 CCCGACATAGGCAAA TAGCACCCCGAGACCATAGC-CCG TCCC CAGTGCTATGGTCACGGCG-GCCA GTCCTAAACACAAAA TERM 226 182308 - 182263 - G 74 -11.2 -3.45231 | overlap 182261 182266 CGACATAGGCAAATA GCACCCCGAGACCATAGC-CCG TCCC CAGTGCTATGGTCACGGCG-GC CAGTCCTAAACACAA TERM 227 182306 - 182266 - G 70 -12.6 -2.86838 | gap 1, overlap 182263 182261 CATAGGCAAATAGCA CCCCGAGACCATAGC-CCG TCCC CAGTGCTATGGTCACGGCG GCCAGTCCTAAACAC Rfer_4415 182922 - 183443 + | hypothetical protein TERM 228 183464 - 183482 + T 72 -3.8 -4.78077 | opp_overlap 183467, overlap 183467 CTTGAATCGAGTAAG TCACGGTG TAG CACTGTCA TTTCTTTTAGTTGCC Rfer_4416 183767 - 183489 - | hypothetical protein Rfer_4417 184369 - 184118 - | hypothetical protein Rfer_4418 184936 - 184685 - | hypothetical protein Rfer_4419 185735 - 185232 - | GCN5-related N-acetyltransferase TERM 229 186130 - 186151 + r 74 -2.2 -5.06414 | ATTGTTCCGGCTGCG CCAATGGC TGTAGC GTCATAGG TTTTTCTTGCAAGCA Rfer_4420 186867 - 186523 - | hypothetical protein TERM 230 187156 - 187166 + r 70 -6.8 -4.17789 | opp_overlap 187156 187154 TCTCCAGTCACAACA GGAC ACG GTCC TTTCCTTTGTGATTC Rfer_4421 187422 - 187180 - | hypothetical protein Rfer_4422 187882 - 187439 - | hypothetical protein Rfer_4423 188362 - 187892 - | hypothetical protein TERM 231 188538 - 188519 - R 73 -5 -4.59853 | overlap 188521 CCAAGGCGGCAAAAA TAGTTGGA TTGA TCCAACTG AAATGCCCAACCAAT Rfer_4424 188871 - 188584 - | hypothetical protein Rfer_4425 191103 - 188890 - | hypothetical protein TERM 232 190515 - 190529 + g 77 -8.6 -4.29325 | CTCGGAAGTTTGATG CTCTGT CAA ACAGAG TTTTGCCTGTTCGTA Rfer_4426 191802 - 191329 - | hypothetical protein Rfer_4427 192187 - 191825 - | hypothetical protein TERM 233 192598 - 192619 + r 75 -6.7 -4.40184 | GGCCTAATCCTACCA GATATACTA AAAA TAGTGTATC TTTATATTTAATTCA Rfer_4428 195408 - 193054 - | hypothetical protein TERM 234 194416 - 194398 - G 73 -4.4 -4.58283 | CAATTCCTGCAAAAA CCTGTTCG GAT CGTCCAGG CACACCCATGCGGCG Rfer_4429 195647 - 195423 - | hypothetical protein Rfer_4430 198313 - 195650 - | XRE family transcriptional regulator Rfer_4431 199121 - 198792 - | hypothetical protein TERM 235 198818 - 198834 + g 74 -6.5 -4.35044 | TTGTAAGCACCGCCA TGAGCCC AAC GGACTCA TTTGTGTTTAACTCG TERM 236 198990 - 198980 - G 71 -5.4 -4.42464 | AACGCTCCAAATAAA TACC AAA GGTA TAACCAAACACAGCA Rfer_4432 199416 - 199150 - | hypothetical protein Rfer_4433 199782 - 199429 - | hypothetical protein Rfer_4434 200174 - 199794 - | hypothetical protein Rfer_4435 200598 - 200359 - | hypothetical protein Rfer_4436 201030 - 200608 - | hypothetical protein Rfer_4437 202354 - 201014 - | hypothetical protein TERM 237 202325 - 202335 + g 75 -2.4 -4.87807 | TGCGAACTGAAACTT GGGC CCA GCCG TTTTTAGTCTCTTAA Rfer_4438 202693 - 202448 - | hypothetical protein Rfer_4439 202951 - 202703 - | hypothetical protein Rfer_4440 203297 - 202983 - | hypothetical protein Rfer_4441 203903 - 203307 - | hypothetical protein Rfer_4442 204236 - 203916 - | hypothetical protein Rfer_4443 204647 - 204246 - | hypothetical protein Rfer_4444 205100 - 204657 - | hypothetical protein Rfer_4445 205435 - 205109 - | hypothetical protein TERM 238 205197 - 205187 - G 77 -8.2 -4.35483 | TGCCATGACAAGAAA CGCC AGC GGCG TCGAAAGTCCAGCGA Rfer_4446 206694 - 205912 - | hypothetical protein Rfer_4447 207005 - 206706 - | hypothetical protein Rfer_4448 207790 - 207515 - | hypothetical protein Rfer_4449 208062 - 207787 - | XRE family plasmid maintenance system antidote protein Rfer_4450 208350 - 208072 - | plasmid maintenance system killer Rfer_4451 209071 - 208382 - | phage integrase TERM 239 209295 - 209319 + r 100 -7.7 -5.60993 | opp_overlap 209295 CGGTTGCCTACTAAA CCTCCGTCGCT TTT GGCCTCGGAGG TTTTTTTATGGCCCA TERM 240 209419 - 209391 - R 100 -10.9 -5.27938 | opp_overlap 209391 ATGGGCAAAGAAAAA GGCCACCAATCCA TAA CGGAAAGGTGGCC TTTTGGGTGCTGATA TERM 241 209391 - 209419 + r 86 -10.2 -4.21908 | opp_overlap 209391 ATGGGCAAAGAAAAA GGCCACCAATCC ATAAC GGAAAGGTGGCC TTTTGGGTGCTGATA Rfer_4452 210000 - 209761 - | hypothetical protein Rfer_4453 210538 - 210008 - | hypothetical protein TERM 242 210561 - 210530 - G 71 -9.5 -3.81256 | gap 1, opp_overlap 210540, overlap 210526 ACTTTCAAAAATTAA CGGACACAT-TGCC TTGCG GGCAGACGTGCCCG TCTGGGCTTGTCCAA Rfer_4454 210878 - 210588 - | hypothetical protein Rfer_4455 211540 - 210875 - | hypothetical protein TERM 243 210939 - 210956 + g 73 -9.9 -3.61398 | GCTTGTTCGACCAGT TCGTCAC AATC GTGACGA TTGTTGGGGCCAAAA TERM 244 211832 - 211876 + r 83 -7.8 -4.62783 | gap 1, opp_overlap 211837, overlap 211837 CGGCATTCTCCAATG AAAAAGCCCCGCCACCGTCCT TTTG AGGACAGCG-CGGGGCTTGTG TTTTTGAGATGGGTG TERM 245 211837 - 211871 + r 91 -12.1 -4.08349 | gap 1, opp_overlap 211837, overlap 211832 TTCTCCAATGAAAAA GCCCCGCCACCGTCCT TTTG AGGACAGCG-CGGGGC TTGTGTTTTTGAGAT TERM 246 211871 - 211837 - R 100 -16.5 -4.8622 | gap 1, opp_overlap 211837 211832 TTCTCCAATGAAAAA GCCCCGCCACCGTCCT TTTG AGGACAGC-GCGGGGC TTGTGTTTTTGAGAT Rfer_4456 212212 - 211928 - | hypothetical protein Rfer_4457 212976 - 212209 - | hypothetical protein TERM 247 212441 - 212463 + g 70 -4.1 -4.60889 | CATTCCTCTGCGACT TTGAATCGG CCCAT CCGGTCCAA TTTTTCAAGGTCGTT Rfer_4458 213355 - 213035 - | hypothetical protein Rfer_4459 213761 - 213345 - | hypothetical protein TERM 248 214295 - 214338 + r 100 -15.5 -4.11394 | gap 2, opp_overlap 214296 214302, overlap 214296 214302 ATCTGAGCCGCCAAA ACACAAAGCCCCCAATCCACG CGAA CG-GGATTGGGGGCTT-GTGA TTTTGAAAATAGCGT TERM 249 214337 - 214296 - R 100 -19 -4.09685 | gap 2, opp_overlap 214295 214296 214302, overlap 214302 TCTGAGCCGCCAAAA CACAAAGCCCCCAATCCACG CGAA CG-GGATTGGGGGCTT-GTG ATTTTGAAAATAGCG TERM 250 214296 - 214337 + r 100 -19 -3.06515 | gap 2, opp_overlap 214296 214302, overlap 214295 214302 TCTGAGCCGCCAAAA CACAAAGCCCCCAATCCACG CGAA CG-GGATTGGGGGCTT-GTG ATTTTGAAAATAGCG TERM 251 214332 - 214302 - R 100 -17.7 -4.45168 | gap 1, opp_overlap 214296 214295 214302, overlap 214296 CCGCCAAAACACAAA GCCCCCAATCCACG CGAA CG-GGATTGGGGGC TTGTGATTTTGAAAA TERM 252 214302 - 214332 + r 100 -17.7 -3.68359 | gap 1, opp_overlap 214302 214296, overlap 214296 214295 CCGCCAAAACACAAA GCCCCCAATCCACG CGAA CG-GGATTGGGGGC TTGTGATTTTGAAAA Rfer_4460 214760 - 214389 - | hypothetical protein TERM 253 214651 - 214666 + g 70 -3.2 -4.63932 | CGCAGCTGCGCCCGT TCCTGC TTAT GCACGA TTTTCTTGGCGGCTG TERM 254 214806 - 214780 - R 100 -12.2 -4.64861 | opp_overlap 214788 TGTCCTGAAAAGAAA GGGCACATCCCC ACT GGGGTTGTGTCC CAGTGGGTGAAAAAA Rfer_4461 215493 - 215200 - | hypothetical protein TERM 255 215431 - 215458 + g 71 -6.8 -4.25606 | GCGAACGATATTGAC TGCGGCGCTCGC ACGG GCGTTCGCCGGA TTGTTTTCAATATTC TERM 256 215692 - 215708 + r 74 -8.1 -3.92659 | ACGGAAAACCAATCC TTTCTGA TTT TCAGAAA TTTGAATTTTGCGGC TERM 257 216131 - 216089 - R 100 -13.5 -3.93262 | gap 1, opp_overlap 216093 216129, overlap 216092 CGCCAAGACATGAAA CACCTTCCCGGCCAGATACC TTGC GGTACCTGGCCGGGGAT-TG GTTGGGTGCTAGACC TERM 258 216129 - 216092 - R 90 -16.3 -2.724 | opp_overlap 216093, overlap 216089 CAAGACATGAAACAC CTTCCCGGCCAGATACC TTGC GGTACCTGGCCGGGGAT TGGTTGGGTGCTAGA TERM 259 216093 - 216128 + r 100 -19.8 -3.38316 | opp_overlap 216092 216089 AAGACATGAAACACC TTCCCGGCCAGATACC TTGC GGTACCTGGCCGGGGA TTGGTTGGGTGCTAG Rfer_4462 216478 - 216140 - | hypothetical protein TERM 260 216517 - 216476 - G 100 -9.5 -5.14563 | opp_overlap 216500, overlap 216478 216500 CGTTTTATCAAAAAA CATGGTCGTACTCCTTCAA TGAA TTCAAAGAGTCCGACCAGG CCACTTTGATGTTGC TERM 261 216515 - 216478 - R 86 -10.7 -4.20707 | opp_overlap 216500, overlap 216476 216500 TTTTATCAAAAAACA TGGTCGTACTCCTTCAA TGAA TTCAAAGAGTCCGACCA GGCCACTTTGATGTT TERM 262 216655 - 216683 + r 89 -2.9 -5.49569 | opp_overlap 216640, overlap 216640 216639 TCCGATGTGCGCACA CCTCCCGAGAGGG GTA TCCACATGGGACG TTTTTTGTGTTCCTG Rfer_4463 217554 - 216907 - | hypothetical protein TERM 263 217566 - 217580 + H 76 -2.8 -5.08088 | ACATTCTTCAATCCA TGGTTT AGG AGGCCA TTTTTGTTCAGGATT Rfer_4464 218104 - 218517 + | hypothetical protein Rfer_4465 218514 - 219023 + | hypothetical protein Rfer_4466 219027 - 219458 + | hypothetical protein Rfer_4467 219455 - 221203 + | SNF2-related Rfer_4468 221200 - 221715 + | hypothetical protein TERM 264 221988 - 221978 - g 70 -3.2 -4.7078 | CTAATGAGCCAAAAA GCAA ACT CTGC CAGCCTCATCTTCGA TERM 265 222106 - 222094 - g 71 -6.9 -4.24204 | opp_overlap 222104 CATCCAGACGCAAAA GCAGG TTG CCCGC TGGAAGGCGTTTGTT Rfer_4469 221753 - 223687 + | hypothetical protein Rfer_4470 223684 - 223983 + | hypothetical protein TERM 266 225001 - 224990 - g 76 -5.8 -4.60487 | overlap 224991 224992 TATTACGCTGAAAAA GGCA AGGT TGCC CTGGCTCGCGCCAGC TERM 267 227091 - 227077 - g 72 -2.7 -4.7373 | CGAGCCCATCAAAAA GACCG CATTT CGGGC AAGCCAGGTGAATAG Rfer_4471 224123 - 227479 + | hypothetical protein TERM 268 227972 - 227985 + G 84 -5.9 -4.87665 | AGCTTTTGCGCACAC CTGCG GCCA CGCGG TTTTTGTCGATGGAG Rfer_4472 227485 - 228531 + | phage Gp37Gp68 Rfer_4473 228563 - 229528 + | hypothetical protein Rfer_4474 229547 - 230008 + | membrane-bound metal-dependent hydrolase Rfer_4475 230067 - 230789 + | hypothetical protein TERM 269 231894 - 231879 - g 81 -5.4 -4.78237 | gap 1, overlap 231881 CAGGTGATAAGAAAA CAG-CGG ATG CCGCCTG GGCCAATAAACGCGA TERM 270 231891 - 231881 - g 71 -8.2 -4.00512 | overlap 231879 GGTGATAAGAAAACA GCGG ATG CCGC CTGGGCCAATAAACG Rfer_4476 230891 - 234598 + | hypothetical protein Rfer_4477 234585 - 235250 + | hypothetical protein TERM 271 235324 - 235307 - g 72 -12.7 -3.06796 | opp_overlap 235309, overlap 235309 GCCGAGGTCATTGAA CACGCCC TGTC GGGCGTG ATATCGGCAGAGACT Rfer_4478 235247 - 236488 + | hypothetical protein TERM 272 236490 - 236505 + F 81 -6.8 -4.69027 | opp_overlap 236490 TGGCCGCCAGATGAA TGCCGC CGAG GTGGCA TTTTTGCGTCAGTTT TERM 273 237136 - 237159 + G 71 -7.4 -4.19953 | gap 1 CTGCAGGCGGCAGCG CAGCTGG-CCC GAA GGGACCATCTG TTTTCCAATTCGGTG Rfer_4479 236569 - 237285 + | hypothetical protein TERM 274 238596 - 238581 - g 71 -6.2 -4.30014 | TGCAGCAATTCAAAA TCAGAT CCTG ATCTGA AGCGTGCCAAAGCCA TERM 275 238643 - 238608 - g 74 -11.1 -3.55622 | CTGAAGCGTGCCAAA GCCATGGCGAGGCAG GATGGA CTGCCCCTGCATGGC GCGCCCATGCCGCTG Rfer_4481 237606 - 238856 + | DNA methylase N-4/N-6 TERM 276 239095 - 239106 + G 70 -3.6 -4.7173 | CGGCTTTCAAGCTCG GCTC TCAA GGGC TTTTTCAATCTGGTC Rfer_4482 238990 - 239436 + | hypothetical protein Rfer_4483 239438 - 240118 + | hypothetical protein Rfer_4484 240422 - 241171 + | hypothetical protein Rfer_4485 241912 - 241319 - | hypothetical protein TERM 277 241809 - 241834 + g 72 -13.9 -2.55074 | overlap 241802 CGGTCGCTTGTCACC GCGCGTGGCCG TACC CGCCCGCGCGC TGGGTTGCCATTGCC TERM 278 241942 - 241965 + r 90 -12.4 -3.92178 | opp_overlap 241939, overlap 241954 GTTCTGCACCAAGTT GCTGCAGGCG CTCC CACCTGCAGC TTTGCTTGCCGTGGT Rfer_4486 243761 - 242157 - | hypothetical protein TERM 279 243935 - 243956 + H 72 -2.2 -4.91109 | gap 1, opp_overlap 243935, overlap 243935 TTTGGACGTAGCAAT CCC-CTGCC CTTTC GGCACCGGG TTTTTGTCATGGGCC TERM 280 244066 - 244035 - H 77 -11 -3.55622 | gap 1 GGTAAGGCTTTTAAA CCTGCACTGTGAG TACCAGC CTC-CAGTGCAGG GGTCGTGCGGCTGTA TERM 281 245830 - 245845 + H 70 -3.2 -4.69549 | opp_overlap 245821 CCAATAGCCGGAGCA CCGC CACCAACA GCGG TTTTGATTTTCGATT TERM 282 246667 - 246653 - H 70 -9.2 -3.72576 | opp_overlap 246653 246662 GCCTTCCTCATTAAA GGGCCA CGC CGGCCC TTTAAACGGTCGATT TERM 283 246785 - 246741 - H 100 -28.3 -3.30124 | overlap 246742 246775 GCCGACGCCTGACAA CCTATTCATCGTATTGGGCCA GAT TGGCCCAATACGATGAATAGA TCGAATCATCAACAT TERM 284 246784 - 246742 - H 100 -29.6 -2.57931 | overlap 246741 246775 CCGACGCCTGACAAC CTATTCATCGTATTGGGCCA GAT TGGCCCAATACGATGAATAG ATCGAATCATCAACA Rfer_4487 246851 - 247960 + | hypothetical protein TERM 285 248856 - 248871 + G 70 -3.3 -4.67234 | CGGGATGATCTTCGC TATCG CTTTTC CGATA TTTTTCGCATTAGCT TERM 286 249027 - 248997 - g 88 -6.6 -4.90869 | opp_overlap 249001 249002 ATCAGGAAGCAAAAA CGGCTGGCGGCAGC AGC GATGGCGCTGGCCG CCCTTTCGTTTAGTG Rfer_4488 248829 - 249575 + | lytic transglycosylase, catalytic Rfer_4489 249632 - 250843 + | hypothetical protein TERM 287 251040 - 251052 + F 76 -3.4 -5.12617 | TTTTAGATGAGTCAG TGCA TTTTC TGCA TTTTTTCGATAGTTG Rfer_4490 251144 - 252202 + | allergen V5/Tpx-1-like protein TERM 288 252244 - 252226 - T 100 -12.4 -4.93365 | opp_overlap 252226 TGTCACAATGAAAAA CGCCGCAA TCT TCGCGGCG TTTTTTCGGCAATTT TERM 289 252226 - 252244 + T 100 -10.2 -5.03747 | opp_overlap 252226 TGTCACAATGAAAAA CGCCGCAA TCT TCGCGGCG TTTTTTCGGCAATTT Rfer_4491 252832 - 252311 - | hypothetical protein Rfer_4492 254463 - 252892 - | methylation Rfer_4493 255713 - 254487 - | type II secretion system protein E TERM 290 255061 - 255090 + g 70 -4.9 -4.54026 | gap 1 ATCGATATCACATTG GTGCCAACTTCGCG AGG CGTGATGC-GGCAC TTCTTTTCTTTCAGC Rfer_4494 256328 - 255756 - | methylation Rfer_4495 257445 - 256390 - | hypothetical protein SEQUENCE gi|89898822|ref|NC_007908.1| Rhodoferax ferrireducens T118, complete genome (length 4712337) TERM 1 1233 - 1210 - g 89 -11.6 -4.18488 | overlap 1211 ATGTACTCCAAGAAA CGGCCGGCCA GCAT CGCCCGGCCG CGCCAGATTGCCATG Rfer_0001 7 - 1419 + | chromosomal replication initiator protein DnaA Rfer_0002 1515 - 2618 + | DNA polymerase III, beta subunit TERM 2 5320 - 5300 - g 80 -14.7 -3.09933 | opp_overlap 5298, overlap 5305 CGTGAATTCATCGAA GCCAACGCG CTG CGCGCTGGC AATATTGACGTCTGA Rfer_0003 2723 - 5335 + | DNA gyrase, B subunit Rfer_0004 5825 - 5397 - | signal-transduction protein Rfer_0005 6309 - 7871 + | diguanylate cyclase Rfer_0006 7888 - 8466 + | NnrU TERM 3 9413 - 9431 + G 93 -16 -3.54424 | CGGGGCCGGCGTGAT GGCGGCTG ACG CAGCCGCC TTTGCCGAGGTCGAG Rfer_0007 8487 - 11159 + | GCN5-related N-acetyltransferase Rfer_0008 11364 - 11152 - | hypothetical protein Rfer_0009 12215 - 11364 - | integral membrane protein TERM 4 12476 - 12464 - g 84 -6.2 -5.00616 | opp_overlap 12473, overlap 12465 12466 CCGTTTCCCAAAAAA GCGC GCAAG GCGC TGGACGCCGCCGGCG Rfer_0010 12308 - 12673 + | glutaredoxin TERM 5 12711 - 12683 - T 100 -26.1 -5.08824 | opp_overlap 12677 GCCTGACGCAAAAAA GCCGGCGTCTGCG GCA CGCAGACGCCGGC CCGGGCTCTCTACAC Rfer_0011 13288 - 12743 - | hypothetical protein rdgC 13460 - 14371 + | recombination associated protein TERM 6 14394 - 14411 + T 70 -6.9 -4.09511 | GGTTCTGAAACGGCA CCCCGAC ACGC GTCAGGG TTTTACAACGCTGTT Rfer_0013 15326 - 14571 - | GntR family transcriptional regulator Rfer_0014 15516 - 16868 + | fumarate lyase TERM 7 17333 - 17362 + G 71 -5.7 -4.42748 | gap 1, overlap 17316 17335 TCATGGCGCCTGCCA TGCCCTCTGTGACG GCG CGTT-CGGGGGGTA TTATTTTTCCGATCG TERM 8 17739 - 17727 - g 79 -7.7 -4.53303 | GACCCGCACAGAAAA GAAGG TGG CCTTC GGGTTCGCACTCGCT Rfer_0015 16906 - 18333 + | anion transporter TERM 9 18342 - 18373 + F 100 -16 -3.51032 | opp_overlap 18338 18335 TTACTAAACAGGCGT CTGTCATCCGGC ACAGTGAG GCCGGATGACAG TTCTGATTAAACGCT Rfer_0016 18731 - 19351 + | TetR family transcriptional regulator TERM 10 19609 - 19584 - g 85 -6.1 -5.02074 | CCAGCGCGGAAAAAA CCGGCACAC TGGCCGAG GTGCGCCAG GCCCTGGGCACTCGC TERM 11 20377 - 20351 - g 76 -6.4 -4.56597 | overlap 20353 CGCCGCGTGCAAAAA CGCGCCAAGCTG TTG CAGTATGGCGAG CGCGTTTGGGGCATT Rfer_0017 19454 - 20614 + | iron-containing alcohol dehydrogenase TERM 12 21031 - 21053 + G 86 -13.4 -3.54543 | CGCCCGTCCTACGCC CTGGGCGTGC TGG GCATGCCCGG TTTCACCGCCTACAT Rfer_0018 20653 - 21687 + | zinc-binding alcohol dehydrogenase Rfer_0019 21742 - 22434 + | ThiJ/PfpI TERM 13 22479 - 22443 - f 80 -12.4 -3.36968 | gap 1, overlap 22447 CAGTTAAGGGCACAA GCAACAGCCAGCGTGAG GCTG CT-ACGATGGCTGTCGC CGCTCCCGGCGTGCT TERM 14 23225 - 23239 + G 71 -9.2 -3.81447 | GCGTTCTGGTTTCTG GGCGTC GGC GGCGCC TTGTTATGGGCTGTG Rfer_0020 22508 - 23584 + | hypothetical protein Rfer_0021 23831 - 23634 - | hypothetical protein Rfer_0022 24616 - 23927 - | Crp/FNR family transcriptional regulator TERM 15 24479 - 24463 - G 73 -4.4 -4.67982 | gap 1, overlap 24464 24465 TTTCACTGAATAAAA CGGTGCC AGCC GGCAC-G CTCATGGGCGCCGCG TERM 16 24646 - 24633 - R 75 -3.7 -4.91109 | TGTTCATGATAAAAA GTGGC CTTA GCCCC CGTGAAATATGGACA Rfer_0023 25397 - 24678 - | MerR family transcriptional regulator TERM 17 25710 - 25724 + G 71 -9.2 -3.73775 | CGACGCGCCCGATGC CTCGCC CTG GGCGGG TTTCATGCCGGTGGC TERM 18 27448 - 27393 - g 84 -16.9 -2.71364 | TGACGGCGTCAACGA CGC-GCCCGCCTTGACCGCCGCCGACG TCGG CAT-GGCGATGGCCAACGCGGGCGGCG GCGGCTCGGATGTGG Rfer_0024 25444 - 27717 + | heavy metal translocating P-type ATPase Rfer_0025 28506 - 27784 - | hypothetical protein Rfer_0026 29048 - 28503 - | hypothetical protein Rfer_0027 29516 - 29130 - | hypothetical protein TERM 19 29426 - 29436 + g 71 -6.8 -4.24204 | opp_overlap 29425 CGGAGAGCACAAAGG CTGC ATG GCAG TTTTGGCTATGGATG Rfer_0028 32813 - 29673 - | HsdR family type I site-specific deoxyribonuclease TERM 20 29898 - 29908 + g 71 -8.2 -4.06361 | overlap 29903 CTCATCATCCATCTC GCGC ACG GCGC TTTCGTTGTCTGTCA TERM 21 30223 - 30208 - G 81 -4.7 -5.00884 | overlap 30209 ACTTCTTCCAAAAAA GCATC GGACAG GATGC CAATGTCGGGCCGCT TERM 22 31932 - 31886 - G 74 -10.9 -3.48276 | gap 2, opp_overlap 31885, overlap 31887 GCGTGTGCCACACAA TGCCACCCATGCGCGAGCCGGGC TTC ACCCG-CTCG-GCATAGCTGGCC CATTGCTCTTGCGCC TERM 23 31931 - 31887 - G 76 -14.4 -2.68823 | gap 2, opp_overlap 31885, overlap 31886 CGTGTGCCACACAAT GCCACCCATGCGCGAGCCGGGC TTC ACCCG-CTCG-GCATAGCTGGC CCATTGCTCTTGCGC TERM 24 32225 - 32190 - G 76 -6.1 -4.62069 | gap 1 GCGCCAGGGCAAAAA GCGCTCA-AAGCTGGC GGTGA GCGAGCCTATGCGCGC ATGCAAACCGTCGGA Rfer_0029 33959 - 32826 - | hypothetical protein Rfer_0030 35299 - 33956 - | restriction modification system DNA specificity subunit Rfer_0031 36422 - 35292 - | hypothetical protein TERM 25 36053 - 36071 + g 100 -14.6 -4.72272 | CAATGCTGGAGGATG GTGCGGAC AGT GTCCGCAC TTTTTGCTCCAGCAG TERM 26 36131 - 36113 - G 79 -14.6 -2.87564 | opp_overlap 36113 CCACCTGGGCAGATA GTGCGGAC GCT GTCCGCAC TATCTGCGGGTAGGC TERM 27 36113 - 36131 + g 79 -14.6 -2.88544 | opp_overlap 36113 CCACCTGGGCAGATA GTGCGGAC GCT GTCCGCAC TATCTGCGGGTAGGC Rfer_0032 38110 - 36476 - | N-6 DNA methylase TERM 28 37087 - 37112 + gr 72 -11.9 -2.70932 | gap 1, opp_overlap 37085 GCATCCACGCAAAGT TGGCGTTGCCGT CGG GCGGCA-CGCCA TACTTCCAGCGCGGA TERM 29 37713 - 37751 + gr 76 -5.4 -4.59773 | gap 1, overlap 37698 37711 37722 GCGTCGTCCAGCAGG CGGCCGATGCCTTTGAA CTTGTA TTCAAAGGTTTTG-CCG TTTTTGACGGTGAGC TERM 30 37722 - 37743 + gr 77 -7.4 -4.31329 | overlap 37711 37713 AGCAGGCGGCCGATG CCTTTGAA CTTGTA TTCAAAGG TTTTGCCGTTTTTGA Rfer_0033 38348 - 38073 - | hypothetical protein TERM 31 38157 - 38171 + gr 71 -7.8 -3.98661 | CCTGCTGGCTATTTG GCTGCT ACC AGCGGC TTTGTCGTCGATGTA Rfer_0034 38838 - 38578 - | cell division topological specificity factor MinE Rfer_0035 39658 - 38843 - | septum site-determining protein MinD Rfer_0036 40519 - 39734 - | septum site-determining protein MinC TERM 32 40234 - 40191 - G 76 -10.8 -3.72576 | opp_overlap 40192, overlap 40171 40195 GGCGCCTCCACCAAA CCCAGCGCCAGCGCTGCTTG CATC CACACGGCGCCGGCGCCACG CGCCGCCACTGCCAG TERM 33 40230 - 40195 - G 76 -14.6 -2.67803 | opp_overlap 40192, overlap 40171 40191 CCTCCACCAAACCCA GCGCCAGCGCTGCTTG CATC CACACGGCGCCGGCGC CACGCGCCGCCACTG Rfer_0037 42753 - 41353 - | tetratricopeptide TPR_2 Rfer_0038 43217 - 42750 - | cytochrome C biogenesis protein Rfer_0039 43738 - 43214 - | periplasmic protein thiol Rfer_0040 45708 - 43735 - | cytochrome c-type biogenesis protein CcmF TERM 34 44230 - 44220 - G 81 -4.6 -4.9218 | CACCGACCACAAAAA CGGC AAT GCCA ATGTGCGCCACATGC TERM 35 44716 - 44687 - G 75 -8.6 -4.16279 | gap 1, opp_overlap 44689 44689 GACACCAGTGCAAAA GCGCCGCCAGC GCGGACTTT GCTGGCG-CGC ATGGCAAACAAGGTG TERM 36 45586 - 45619 + g 72 -13.2 -2.62184 | gap 1, opp_overlap 45568 CAGCGCTTGTGCACC GGGGCGTGCC-ATTG CCATC CAGTCGGCGCGCCCC TGCTGTCCACCCACG Rfer_0041 46162 - 45719 - | CcmE/CycJ protein Rfer_0042 46338 - 46159 - | Heme exporter protein D (CcmD) Rfer_0043 47065 - 46325 - | heme exporter protein CcmC Rfer_0044 47745 - 47062 - | heme exporter protein CcmB Rfer_0045 48374 - 47742 - | heme exporter protein CcmA TERM 37 48505 - 48490 - H 83 -7.5 -4.60797 | opp_overlap 48490 CTCTCAGAGACAAAA CGCCC CTAAAC GGGCG TTTCTTATGAACATT TERM 38 48490 - 48505 + H 77 -7.5 -4.31835 | opp_overlap 48490 CTCTCAGAGACAAAA CGCCC CTAAAC GGGCG TTTCTTATGAACATT Rfer_0046 48665 - 49135 + | cytochrome c family protein, putative TERM 39 49178 - 49196 + T 100 -11.7 -5.00616 | opp_overlap 49178 GGGCGCTGCAAAAAA GCCGCTG CAAGC CAGCGGC TTTTTTACGCCCGCC TERM 40 49196 - 49178 - T 100 -11.7 -5.00616 | opp_overlap 49178 GGGCGCTGCAAAAAA GCCGCTG CAAGC CAGCGGC TTTTTTACGCCCGCC Rfer_0047 49847 - 49239 - | glutathione S-transferase-like Rfer_0048 51486 - 50035 - | aldehyde dehydrogenase TERM 41 52220 - 52198 - g 70 -12.6 -2.93073 | opp_overlap 52201, overlap 52195 GGGCTTGAACAACTA CGCCGCCGGC CGG GCCGGCGACC CGCCCGCAGTGCGTC TERM 42 53673 - 53649 - g 70 -3.5 -4.65916 | opp_overlap 53635 TGCATTTGAAGAAAA GCAACTTCAAA GGC TTTGCGGCTGC AGGCAAAGTGACTGC Rfer_0049 51689 - 53728 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Rfer_0050 53728 - 54402 + | methyltransferase GidB TERM 43 54709 - 54689 - g 74 -3.9 -4.8622 | overlap 54690 54705 GTTGCCAATCAAAAA GGTGGCGTC GGC AAGACCACC ACGACGGTCAATCTG Rfer_0051 54656 - 55441 + | cobyrinic acid a,c-diamide synthase TERM 44 55585 - 55573 - g 76 -9.1 -4.07568 | CCCCGGCTGGCAAAA TGCGG GCC CCGCA CACTGGCTGAGCCGG Rfer_0052 55517 - 56152 + | hypothetical protein Rfer_0053 56171 - 57112 + | parB-like partition proteins Rfer_0054 57198 - 57941 + | methyltransferase type 12 TERM 45 58303 - 58313 + G 71 -6.8 -4.25104 | GGGCACGATTGGCAT TCCG GAC CGGA TTTTGCTCAAGCCCG Rfer_0055 58043 - 58789 + | metal dependent phosphohydrolase TERM 46 58855 - 58841 - f 74 -4.2 -4.69868 | ACAGAATAAAAAGAA TCGGTG CGC CAGCGA ACAGACGCCAGGCAG Rfer_0056 58963 - 60168 + | putative lipoprotein Rfer_0057 60184 - 60690 + | hypothetical protein Rfer_0058 61241 - 60804 - | TPR repeat-containing protein TERM 47 61298 - 61274 - R 88 -10 -4.52589 | opp_overlap 61258, overlap 61293 TGGCCGGATAGAAAA CGGCCCCTCT TATGC AGAAGAGCCG TTCAGCGACCCGTTG Rfer_0059 62839 - 61322 - | hypothetical protein TERM 48 62682 - 62702 + g 74 -3.2 -4.79223 | gap 1, overlap 62683 ATGCATTTTTTCCCG ATCGCC-GC ATCG GCTGGCGAC TTTTTGATCATCTGA Rfer_0060 63674 - 62970 - | Crp/FNR family transcriptional regulator TERM 49 63566 - 63546 - G 89 -7.5 -5.0538 | GCCGACCCGAAAAAA CATCTCGCC ACG GGCCAGACG CACCAAGCGGCATCC Rfer_0061 64143 - 63721 - | phenylacetic acid degradation-related protein Rfer_0062 65950 - 64247 - | acyl-CoA dehydrogenase-like TERM 50 65570 - 65557 - G 72 -2.3 -4.74103 | opp_overlap 65560, overlap 65558 65559 GGCCGAAGGCAAAAA TGCCG CCTT CGTCA AGCAGGCGTTTCGCC TERM 51 66235 - 66271 + G 73 -10.8 -3.65902 | gap 1, overlap 66236 TTCAGCGGGTGCTGC CGTC-CAGCGCCGACGT CGGT GCGGCGACGCTGCGACG TTTGGGTGAACTGGG Rfer_0063 66180 - 66437 + | hypothetical protein TERM 52 67808 - 67825 + G 71 -7 -4.25104 | ATCTGGCGCAGGGCC TGTGGG AGCGCG CCCACA TTTTCCTGCGCCGGG Rfer_0064 66445 - 68331 + | ferrous iron transport protein B Rfer_0065 68336 - 68626 + | hypothetical protein Rfer_0066 69757 - 68690 - | putative ammonia monooxygenase TERM 53 69504 - 69487 - G 81 -6.3 -4.82901 | gap 1, overlap 69488 69489 TGGCGCCCAGAAAAA TGGGCCAG TCA CTGGCC-A CCTTGGCCAGCGTGG TERM 54 70047 - 70074 + G 80 -3.2 -5.01732 | AAGACTTTCCGACCC TGCTGCTGGCCG TGGG CGACAGGCCGCA TTTTTTCGGGCCCTT Rfer_0067 69848 - 70219 + | hypothetical protein TERM 55 70661 - 70635 - g 83 -4.4 -5.06103 | overlap 70637 AGAAGTTTGAAAAAA TGTTCACCACCG TCC CAGTGGTCAAGA AGGGCGACGTGATCA Rfer_0068 70250 - 70840 + | putative lipoprotein transmembrane TERM 56 70846 - 70883 + T 74 -11.4 -3.26189 | gap 2, opp_overlap 70841, overlap 70820 70845 70851 CGCCAAGTGAGGCCT GGCAGGCGCTGGGTTGGC GAGC GCCAACCCAGT-CC-GTC TATTGCTATTAGATT TERM 57 70851 - 70880 + T 81 -14.3 -2.50779 | opp_overlap 70841, overlap 70820 70846 70845 AGTGAGGCCTGGCAG GCGCTGGGTTGGC GAGC GCCAACCCAGTCC GTCTATTGCTATTAG Rfer_0069 72239 - 70953 - | uracil-xanthine permease TERM 58 71993 - 71983 - G 74 -6.8 -4.39571 | opp_overlap 71986, overlap 71984 71985 CCGATAAAGGCAAAA CTGG AGC CCAG GTAACTGGGCACTTT TERM 59 72043 - 72032 - G 78 -2.2 -5.14682 | overlap 72033 72035 TGACAACAAAGAAAA TCAG CGTG CCGA TGCCGCTCATCAAAA TERM 60 72287 - 72259 - R 70 -2.9 -4.74103 | overlap 72261 72286 TTTTCAATTCAAAAA GTGGGTGGATGCG TGA CGCCTCAACCAGC ACCTGCATGCGGTTC TERM 61 72433 - 72451 + r 72 -11.6 -3.05596 | TGATTTATGGTCCAG GCACCGCC GCT GGCGGGGC TTGGCTCCAGACCTG TERM 62 72527 - 72496 - R 100 -24.6 -5.75342 | opp_overlap 72484 72497 GGCGGTCAAAAAAAA GCCAGCGGCAGGTT TTTC AACCTGCCGCTGGC TGGCGCTGTAGCCTG Rfer_0070 72801 - 72547 - | 17 kDa surface antigen TERM 63 72664 - 72609 - G 100 -18.8 -4.07568 | opp_overlap 72608 72648 72649 CCGCGGTGCCCAAAA CGCCGCCGCCGGAGGCGCTACCGACG ACGC CACCGATGACGGCACCGGCGGCGGTG CCCTTTTCCTGGTGG TERM 64 72648 - 72667 + g 82 -9.2 -4.3129 | opp_overlap 72609, overlap 72608 72649 CGACGCCACCGATGA CGGCACCG GCGG CGGTGCCC TTTTCCTGGTGGGTC TERM 65 72649 - 72666 + g 74 -12.7 -3.18292 | opp_overlap 72609, overlap 72608 72648 GACGCCACCGATGAC GGCACCG GCGG CGGTGCC CTTTTCCTGGTGGGT Rfer_0071 73465 - 72818 - | hypothetical protein Rfer_0072 73958 - 73485 - | 17 kDa surface antigen Rfer_0073 74582 - 73992 - | transport-associated TERM 66 74485 - 74504 + g 85 -12.1 -3.72576 | GCGCCTGACGCCGAT GCGCCGG TCGCCT CCGGCGC TTTGCTGCAGCCGAC Rfer_0074 74835 - 75050 + | hypothetical protein TERM 67 75075 - 75096 + F 84 -2.9 -5.41746 | gap 1 CGGCTTGTCGGTCCG GATG-GCGCC ACT GCCGCACGTC TTTTTTTCCCCGCTT TERM 68 75163 - 75181 + F 70 -3 -4.71061 | overlap 75165 75166 AATGCCGTCAAAGTT GATCCGTG CGA CGCGGGTA TTTTTGAGTGTCAAT TERM 69 75840 - 75825 - g 84 -5.4 -4.90013 | gap 1, overlap 75826 75827 GAACTCAAGCAAAAA GCCGAGC AGG GCTCG-C AGCAACTGCAAGGCG Rfer_0075 75237 - 76511 + | hypothetical protein Rfer_0076 77026 - 76523 - | CinA-like Rfer_0077 77604 - 77023 - | phosphatidylglycerophosphatase A Rfer_0078 79031 - 77643 - | phospholipase D/transphosphatidylase TERM 70 77866 - 77884 + g 80 -10.2 -4.13767 | opp_overlap 77867, overlap 77867 CCCACCGTCGACCAG ACGCCGTC GAT GACGGCGG TTTTGGCATGCAGCA TERM 71 77883 - 77867 - G 73 -13.7 -2.78816 | opp_overlap 77866 77867 CCACCGTCGACCAGA CGCCGTC GAT GACGGCG GTTTTGGCATGCAGC TERM 72 77867 - 77883 + g 76 -13.7 -3.08046 | opp_overlap 77867, overlap 77866 CCACCGTCGACCAGA CGCCGTC GAT GACGGCG GTTTTGGCATGCAGC TERM 73 78559 - 78549 - G 75 -2.4 -5.0133 | opp_overlap 78538 CAGGCGCTCAAAAAA GGCC TTG GGCG TATTGAGGGCGCCCA TERM 74 78647 - 78657 + g 71 -6.8 -4.22652 | opp_overlap 78639, overlap 78639 CGGAGAACTGGCGCC CGAC CTC GTCG TTTTCGATGATGTAG TERM 75 78851 - 78871 + g 74 -6.7 -4.36914 | opp_overlap 78863 CCGATTGGCTTTTGA GCTGCGCCA GAA TGGCGGCGC TTTTCTGCGCCGGGA Rfer_0079 81037 - 79028 - | AsmA TERM 76 80734 - 80760 + g 71 -6.4 -4.23781 | opp_overlap 80725, overlap 80754 GAGACAGGTCGAGCG TGATCTCCACCG CGT CGGCGGCGAGCA TTTGCTTTTCCTGGG TERM 77 81078 - 81065 - R 79 -3.1 -5.28481 | CACGGAACGAAAAAA TCCAG TGAA CTGAA GAATTATCTGCTCCC TERM 78 81195 - 81237 + r 75 -12.7 -2.66695 | gap 2, opp_overlap 81161, overlap 81194 81192 CTTGCGGGCACGGCC GG-CGGGGCGGAC-CTGCAGG TAG CAGGCAGTGTCCGCCCTGGCC CTCTTTACTGAGCCG Rfer_0080 81565 - 81242 - | collagen triple helix protein TERM 79 81674 - 81646 - H 76 -3.1 -5.00616 | overlap 81647 81650 CGGTTTCTGAAAAAA TTAACGCTGGC AGATCAG ACCAGCGCTAG TGCAGCGTCGCATTC TERM 80 82260 - 82248 - g 76 -5.5 -4.60678 | overlap 82253 GAAAAACAGAAGAAA CCCAA GCA CTGGG ATAAGGGCCAGGGCC Rfer_0081 81897 - 82316 + | hypothetical protein Rfer_0082 83161 - 82418 - | hypothetical protein TERM 81 83295 - 83280 - H 81 -11.8 -3.53012 | opp_overlap 83289 CTGGGCGCGCTGAAA GGCCCG CACC CGGGCC CGCAAGGCGGGGTCC TERM 82 83491 - 83530 + H 79 -13.6 -2.80816 | gap 1, opp_overlap 83489 CCCAGCGCAACCAGC CTGACACGGTGCAGGGTGG GCC CCACC-TGCAGCGTGGCGG TCTGCTCGCTCAGGC TERM 83 83985 - 84036 + H 82 -11.5 -3.85698 | GGTGCGCTGCGGGCT GCGGCCGGGCGAGGCG-TGCGCGCT GTCG GGCCCGCAATACCTCGGCCG-CCGC TTTGTCCACCACGCG TERM 84 84206 - 84175 - H 71 -10.1 -3.53444 | gap 1, opp_overlap 84194, overlap 84176 GGACGGCCGGTCAAA CGGCAGCGCGCCGG TGTGC CCGGC-CACCGCCA GGCGATGCCCGATGT TERM 85 84332 - 84368 + H 70 -8.7 -3.61764 | opp_overlap 84339, overlap 84303 84305 CGCAGTTCGGGCTGG CCAATCAGCACGATCTG CAG CAGCTTGCGCTCATTGG TTTCCAGGTTGGTCA TERM 86 84674 - 84646 - H 76 -11.7 -3.14463 | AATCTGCTCCAGGAA GCAGCGGCAAATC GTG GTTTTGCCGGTGC CGATGTCGCCGGTGA TERM 87 85327 - 85345 + G 81 -8 -4.63542 | opp_overlap 85310 GTACCTGATTGGCAC CGGCACCG GTC TGGCGCCG TTTTTGAGCATTGTG Rfer_0084 84980 - 85756 + | ferredoxin--NADP(+) reductase TERM 88 86266 - 86280 + G 70 -3.5 -4.68593 | gap 1, overlap 86266 TTTGTCTTCAGTCCG GCGGCG GTGG CGC-GC TTTTTAGCTGGTGAC Rfer_0085 85846 - 86664 + | nucleotidyl transferase Rfer_0086 86684 - 88093 + | peptidase M24 TERM 89 88431 - 88443 + G 74 -6.2 -4.57569 | CGACGACTATCCGGA GGCG GCACG CGCC TTTTTGAAACGCTAC Rfer_0087 88135 - 88647 + | thiol-disulfide isomerase-like protein Rfer_0088 91500 - 88705 - | pyruvate phosphate dikinase TERM 90 90209 - 90227 + g 75 -3 -5.00616 | overlap 90212 TCTTCCGGTTTGGTT TCTTCCCG CAC CAGGATGA TTTTTTCACCGGCAC TERM 91 91428 - 91442 + g 90 -5.6 -5.27023 | opp_overlap 91418 ACAGATTGGCCCCCT TGCCGC CAA GCAGCA TTTTGTTTTTGCCAT Rfer_0089 92597 - 91596 - | proline iminopeptidase TERM 92 92465 - 92433 - G 78 -7 -4.65895 | opp_overlap 92435, overlap 92435 CCCGCCATGCAAAAA CAGCGCCGGCA-CCCC GTC GGGGTTGCCG-CACTC TTCCCAATACAGGGT TERM 93 92463 - 92435 - G 73 -9.6 -3.94812 | opp_overlap 92435, overlap 92433 CGCCATGCAAAAACA GCGCCGGCA-CCCC GTC GGGGTTGCCG-CAC TCTTCCCAATACAGG TERM 94 93221 - 93202 - g 70 -3.6 -4.58395 | gap 1, overlap 93204 93213 GCGACGCTGGAAAAA GCG-CAAAA ACG CTTTGCCGC GCTGGCCAAGGTAGA Rfer_0090 92806 - 93288 + | rubrerythrin Rfer_0091 93415 - 93579 + | rubredoxin-type Fe(Cys)4 protein Rfer_0092 93595 - 94899 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rfer_0093 94994 - 97303 + | malic enzyme TERM 95 97343 - 97386 + F 71 -6.1 -4.2828 | gap 1, overlap 97352 ACTTAGTAAGCTGTT TGATGCTTTGTGTCTGCCTA TTTTT TAGGCAGACGCTT-GCATTA TTTTCGTAAATACGC TERM 96 97352 - 97378 + F 84 -13.1 -3.38158 | overlap 97343 GCTGTTTGATGCTTT GTGTCTGCCTA TTTTT TAGGCAGACGC TTGCATTATTTTCGT TERM 97 97748 - 97767 + G 70 -10 -3.48276 | gap 1, opp_overlap 97746 AACACCGAATTTACA TGC-CCGGG GAG CCCGGCGCA TTGTGTGCGGAGGGG Rfer_0094 97461 - 97853 + | guanine-specific ribonuclease N1 and T1 TERM 98 97958 - 97913 - g 71 -7.3 -4.2123 | gap 1, opp_overlap 97920, overlap 97909 97914 97941 CATTGAGCCAAGAAA CCGCCGCTTTGCAGCGCG-CTG CAA CGGACGTGCCGCTACGCGGCGT GCGGCCAAATATTGT TERM 99 98013 - 98036 + G 95 -11.8 -4.52589 | gap 1 GCCGGAGTTGCAGGG TGC-GGCCCAA TCC TTGGGCCAGCA TTTTCTGTACGCCAA Rfer_0095 97888 - 98337 + | hypothetical protein TERM 100 98565 - 98585 + T 85 -4.7 -5.28176 | gap 1, opp_overlap 98565 TTCCCCGCTCCAGAA GGCCCATC GAAAGA GA-GGGCC TTTTTTCTGGCTGGG TERM 101 98629 - 98652 + T 74 -11 -3.17797 | gap 1, opp_overlap 98623 GGCTGAAAGTTGACC GCCAGCCGGTC AGT GACTGGC-GGC TTGGCTGTGTGTGGC Rfer_0096 99423 - 98638 - | dimethyladenosine transferase Rfer_0097 100829 - 99450 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 102 99783 - 99802 + g 88 -2 -5.54192 | opp_overlap 99784, overlap 99784 CAGCGCGGCAAAATC AGCTTGCC CTGC GGCAACCC TTTTTTTGAATTCAT TERM 103 99880 - 99919 + g 78 -2.6 -5.09259 | gap 1, opp_overlap 99874, overlap 99904 AACAAGATATGGCGG GCCCGGCTCTGCGTGACCG TCA TGG-CGGGCAGTGCCGCAC TTTTCTTTTCCAGTA TERM 104 100046 - 100077 + g 70 -10 -3.48924 | GATCTGCCGTGCGCA GGCCGAGCTCGCCG CCAT TGGCGAGGCTGGCC TTGTCTGAGGCGTCG TERM 105 100235 - 100255 + g 75 -8.2 -4.24342 | GAGCCAGATTGATTT GCTGCACC GCAGG GGTGCTGC TTTGTTGCTCGCGCA TERM 106 100500 - 100517 + g 77 -3.3 -4.90266 | overlap 100502 AATACCGGACTCCCG GGCCAGT TGCA GCTGGGC TTTTTCGTTGATGAG Rfer_0098 103235 - 100836 - | organic solvent tolerance protein TERM 107 103608 - 103638 + G 79 -8.3 -4.4891 | gap 2, overlap 103620 CGCAGGTGCATGCGC CCGAGGTGCTGGCGT GGG ACGC-AGC-CCACGG TTTTATGCTGCTGAC Rfer_0099 103322 - 104410 + | aminoglycoside phosphotransferase Rfer_0100 104991 - 104452 - | hypothetical protein Rfer_0101 105526 - 105077 - | hypothetical protein TERM 108 105217 - 105203 - G 84 -11.4 -4.05446 | GGTGGCAATGACAAA GGCCTG CAC CAGGCC GTCCTCGGTCAGGAC TERM 109 105482 - 105505 + g 76 -5.8 -4.68528 | overlap 105472 105489 GGCCTCGATTTCGTC GGCGCTACCG CCCA CGGAGGCGGC TTGTTTTTTGGCTTT TERM 110 106004 - 105955 - g 73 -9.9 -3.63569 | gap 1, opp_overlap 105962, overlap 105956 GGAAGCCTTCAACAA GTTTCAGGCGGCACAAGG-CGAGC TGG GCTCGGCCTTGAGCCGCTTGATGG CGGTGTCCGAACAGT TERM 111 106003 - 105956 - g 73 -13.4 -2.7782 | gap 1, opp_overlap 105962, overlap 105955 GAAGCCTTCAACAAG TTTCAGGCGGCACAAGG-CGAGC TGG GCTCGGCCTTGAGCCGCTTGATG GCGGTGTCCGAACAG TERM 112 105962 - 105997 + G 91 -19.8 -3.16191 | gap 1, opp_overlap 105956 105955 TTCAACAAGTTTCAG GCGGCACAAGG-CGAGC TGG GCTCGGCCTTGAGCCGC TTGATGGCGGTGTCC TERM 113 106238 - 106220 - g 73 -10.2 -3.67175 | overlap 106233 106234 ACCGTGCAAAATGAA GCGGCGAT CAC AACGCCGC CGGTGGTCGACTTCA Rfer_0102 105632 - 106264 + | hypothetical protein TERM 114 106350 - 106371 + G 74 -6.5 -4.34402 | GGCCGCTGGCTGGCC GTAGCAAGC GTGG GCCTGCTGC TTTTGCTGTCACAGG TERM 115 106903 - 106926 + G 71 -6.6 -4.18018 | TCTTTGCCGTCCCGG TGGTGGGCGC CGTG GCGCGCAGCA TTTTCGGTACCAAGC TERM 116 107000 - 107033 + G 71 -6.5 -4.23281 | GCTCGTCACCGCCAG CCTGGCAATCGCAGC ACTG GCGGCGCTGGTCGGG TTTGTGTTCGCTCTT Rfer_0103 106284 - 107204 + | hypothetical protein Rfer_0104 107204 - 107725 + | hypothetical protein TERM 117 107775 - 107742 - T 84 -13.9 -3.08032 | overlap 107747 TCGGCCCCAAAAGCA GAAAAGCCCGGGTCT TTTC AGATCCGGGCCTCTC ACGTCGCCTGAATGA TERM 118 107770 - 107747 - T 100 -12.4 -4.67635 | overlap 107742 CCCAAAAGCAGAAAA GCCCGGGTCT TTTC AGATCCGGGC CTCTCACGTCGCCTG Rfer_0105 108237 - 107821 - | F0F1 ATP synthase subunit epsilon TERM 119 107893 - 107917 + g 72 -2.9 -4.77759 | gap 1 TTCGGAGGTTGCCCG TGCC-AGATC AATATC GGTCTTGGCA TTTTTCATGGCTTCT Rfer_0106 109663 - 108239 - | F0F1 ATP synthase subunit beta TERM 120 108536 - 108552 + g 76 -10.1 -3.80841 | GCGCTGCAAGGTGCC CTGCACG GCG CGTGCGG TTTCGTAATGGTCCT Rfer_0107 110611 - 109715 - | ATP synthase F1, gamma subunit Rfer_0108 112194 - 110641 - | F0F1 ATP synthase subunit alpha Rfer_0109 112775 - 112245 - | F0F1 ATP synthase subunit delta TERM 121 112740 - 112719 - G 76 -13.1 -3.30243 | overlap 112723 ATTGAGGTCGGATAA CGAAGCCTT GAAC AAGGCTTCG GCGTAGGGGCGGGCA Rfer_0110 113256 - 112786 - | F0F1 ATP synthase subunit B TERM 122 113111 - 113138 + g 74 -5.4 -4.52857 | overlap 113113 AGCTCGGACTTGGCT TTGTCGGCGGCC GCGA GGCCATCGGCTA TTTTCTGTGCCCGCT Rfer_0111 113539 - 113294 - | F0F1 ATP synthase subunit C Rfer_0112 114486 - 113596 - | F0F1 ATP synthase subunit A TERM 123 113842 - 113826 - G 79 -8 -4.57837 | opp_overlap 113834 ACATGTTGCCAAAAA GTCGCA TACCG TGCGAC ACGGTCTTGGCGGCA TERM 124 114173 - 114150 - G 77 -11 -3.64364 | gap 1, opp_overlap 114166, overlap 114148 114138 114151 AAATCCAGACAAACA CGGTCAGCGCC AGC GGCGC-GACCA GCTTGCGGCTGGTGG TERM 125 114166 - 114190 + g 76 -12.1 -3.35679 | opp_overlap 114151 114150 114148 114138 GGTCAGCGCCAGCGG CGCGACCAGCT TGC GGCTGGTGGCG TTATGAATCACACCC Rfer_0113 114980 - 114501 - | putative ATP synthase protein I TERM 126 114600 - 114580 - G 74 -5.3 -4.4648 | overlap 114583 ATCGTCACCACAAAA CCAGCCAGC AGC GCCAGCCAG TTCAACCCCAAAATC TERM 127 114724 - 114682 - G 95 -3.9 -5.71712 | gap 1, overlap 114683 114685 TCCCACACAAAAAAA CCAGTCAGCGCCGAGCCCGC ATTG GCGG-CTCTCCGCTGCCGCG ACAGACCCCGTGCAA TERM 128 116007 - 116044 + G 90 -17.7 -3.20991 | AGGGCTCCCACCGTG GCGCCAGCGCCAGCCAT GAGC GTGGCTGGCACTGGCGG TTACCTTGACTTCGA Rfer_0114 115452 - 116717 + | hypothetical protein Rfer_0115 117476 - 116778 - | DSBA oxidoreductase TERM 129 116977 - 116960 - G 76 -12.7 -3.28712 | CGTCGCTGGCCAGAA TGGCGCG TGCG CGCGCCA CGTCCAGACCCGCCT TERM 130 117259 - 117289 + g 73 -10.4 -3.61536 | overlap 117251 TACTTCTGCGCCAGA TGCTCGCCGATG TCTTGAC CACCGGCGGGCA TTTGGGGGTTGAGTT TERM 131 118420 - 118408 - g 71 -6.9 -4.15044 | GCCTGGCCCAACAAA CCGCC ATG GACGG CTTGACCGGTCTGGC Rfer_0116 117774 - 118970 + | diguanylate cyclase TERM 132 119802 - 119826 + G 74 -12.1 -3.14132 | opp_overlap 119790 CAAGCTACCCGTGGT CTTCGGCAGCG GCT CGCTGCCGAGC TTCCTGGAAAGCAAG Rfer_0117 119521 - 121602 + | AAA ATPase Rfer_0118 121983 - 121603 - | hypothetical protein TERM 133 122762 - 122773 + G 74 -5.8 -4.45945 | GCGCTGGCGGACCAG GGTG CAGA CACC TTTTGGTTGCTGCAT Rfer_0119 122006 - 122905 + | LysR family transcriptional regulator Rfer_0120 124606 - 123047 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Rfer_0121 124739 - 125845 + | zinc-binding alcohol dehydrogenase TERM 134 125868 - 125897 + G 76 -6.4 -4.56775 | overlap 125867 125880 GCTGGAACTGTTGAG CG-AGCACGCCTGC TTTG GC-GGCGTGCAGCG TTTTTACCGGCACGT Rfer_0122 125845 - 126711 + | carboxylesterase Rfer_0123 127846 - 126815 - | inner-membrane translocator Rfer_0124 129368 - 127875 - | ABC transporter related TERM 135 128272 - 128262 - G 81 -4.6 -4.94992 | opp_overlap 128263 GGAAAGTGATAAAAA CCCG GAC CGGA AATGGATCGGTTGCT TERM 136 128301 - 128343 + g 80 -14.8 -3.02144 | CTGCGTCAATGCGTT GAGCGAGATGTTGTCGGCCG TGC TGGCCGACAGCATCAAGCCC TCTTCCCGACGGTCC TERM 137 128409 - 128429 + g 70 -10.5 -3.53012 | CCGTGGCGTCGGCTT CTTGATGGT CTG ACCATCGAG TTTGACGACGCCAGA TERM 138 129150 - 129116 - G 100 -18.6 -4.60255 | AGAACTCTTGAAAAA CGGCGCTGATGCCATG TCG CCTGGCATCAGCGACG GAGGAAAATCGAAGT Rfer_0125 130530 - 129460 - | periplasmic sensory protein associated with the TorRS two-component regulatory system TERM 139 129982 - 129997 + g 70 -4.6 -4.57569 | overlap 129988 GACGACAGCCTTGGC GCTTCC GGCG GGATGC TTTTTGGCCAAATAG TERM 140 130584 - 130567 - R 100 -9.9 -5.055 | CCAAGGTTGAAAAAA CTTCGCA CCAG TGCGAAG GCGGGGAAGACAAGT Rfer_0126 131615 - 130638 - | allophanate hydrolase Rfer_0127 132489 - 131605 - | allophanate hydrolase subunit 1 Rfer_0129 134197 - 133964 - | hypothetical protein Rfer_0130 135102 - 134275 - | hypothetical protein TERM 141 135367 - 135381 + G 85 -5.7 -5.14163 | opp_overlap 135366 GCGACCTGGAGGAAG GCTTG GGGTA CAAGC TTTTTATTCGTCAAT Rfer_0131 135237 - 136160 + | LysR family transcriptional regulator Rfer_0132 137691 - 136207 - | carboxylyase-like protein TERM 142 137117 - 137096 - G 74 -11.5 -3.53012 | overlap 137097 GCGTGCTCTTTGAAA TCCAGCGCG CCAC CGCGCTGGG CCAACCAGCGCATGA TERM 143 137116 - 137097 - G 77 -15 -2.71712 | overlap 137096 CGTGCTCTTTGAAAT CCAGCGCG CCAC CGCGCTGG GCCAACCAGCGCATG Rfer_0133 138301 - 137732 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rfer_0134 138780 - 138298 - | hypothetical protein Rfer_0135 139707 - 138799 - | peptidase U32 TERM 144 139395 - 139385 - G 74 -6.8 -4.36914 | overlap 139386 GGCCCGGCGACAAAA GGCA CTT TGCC TTCCAGGCAGTGCAC TERM 145 139672 - 139652 - G 72 -2.5 -4.83169 | gap 1 ACGGCGTCATAAAAA GCCAGCAC CTCGTC GCGC-GGC CAGTAGTACAGGATC Rfer_0136 140926 - 139829 - | peptidase U32 TERM 146 140344 - 140361 + g 84 -5.5 -5.00884 | opp_overlap 140344 TGCCGAAGCCAAAAA CCTCGAT CTCG ACCGAGG TTTTTTCAAGCACCT TERM 147 140361 - 140344 - G 91 -7.7 -4.74103 | opp_overlap 140344 TGCCGAAGCCAAAAA CCTCGAT CTCG ACCGAGG TTTTTTCAAGCACCT Rfer_0137 141354 - 141058 - | hypothetical protein Rfer_0138 142135 - 141488 - | transferase hexapeptide protein Rfer_0139 143350 - 142208 - | phosphonate metabolism PhnM TERM 148 142435 - 142410 - G 100 -19.1 -3.78775 | TGCCCGAGCATGAAA GTGCCCAGCAG CAGG CTGCTGGGCAC GTAGTCGGACGAAAA TERM 149 142482 - 142464 - G 71 -8.8 -3.75863 | overlap 142465 AAAATGTCCAGCAAA TCGAGCTG CGC CAGCTCGG CGGCCGACACGTTGC TERM 150 142481 - 142465 - G 70 -12.3 -2.84795 | overlap 142464 AAATGTCCAGCAAAT CGAGCTG CGC CAGCTCG GCGGCCGACACGTTG TERM 151 142686 - 142668 - G 70 -10.2 -3.53012 | TCGTGGCTGGCCAAA GGCAGGCC GCG GGCCTGGC ACTCACGCACAATTT Rfer_0140 144068 - 143370 - | phosphonate C-P lyase system, PhnL phnK 144949 - 144065 - | phosphonates transport ATP-binding protein Rfer_0142 145869 - 144946 - | phosphonate metabolism PhnJ TERM 152 145567 - 145580 + g 74 -5.9 -4.49337 | opp_overlap 145567, overlap 145576 GCGCGTCTGGATCAA CGTGG CCTC CCGCG TTTTCTCGGTTGTCG Rfer_0143 147050 - 145866 - | phosphonate metabolism TERM 153 147021 - 147032 + g 71 -7.2 -4.2558 | overlap 147019 GGAACTTTCAATCGC GGCG GCGC CGCC TTTTACTGCAACATA Rfer_0144 147739 - 147140 - | phosphonate metabolism Rfer_0145 148200 - 147736 - | phosphonate metabolism PhnG Rfer_0146 148533 - 149291 + | GntR family transcriptional regulator Rfer_0147 149288 - 149983 + | hypothetical protein TERM 154 150411 - 150421 + G 71 -8.2 -4.08216 | overlap 150376 CAGCCGGCGGCTGGC GCGC AAT GCGC TTTTCAAAGACCTGC TERM 155 150475 - 150516 + G 79 -12.9 -3.47573 | opp_overlap 150462 CAGGGCGCGCTGGCG GATGCCGGCCGCCAGCTGG TGGA CTACCTGGTGGCTGGCGCC TTGTCGTCTGCCTGG Rfer_0148 149980 - 150537 + | phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN Rfer_0149 151086 - 150598 - | N-carbamoyl-D-amino acid hydrolase Rfer_0150 152194 - 151079 - | putative DNA alkylation repair enzyme Rfer_0151 152903 - 152208 - | helix-turn-helix, type 11 Rfer_0152 153213 - 152914 - | hypothetical protein Rfer_0153 153830 - 153291 - | hypothetical protein TERM 156 153621 - 153607 - G 100 -7.8 -5.16572 | ACCGAACGCAAAAAA CCTGGC TCA ACCAGG CCGCAGACGGAGTTG Rfer_0154 154474 - 153968 - | DinB Rfer_0156 156342 - 155317 - | hypothetical protein Rfer_0157 157613 - 156648 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 157 157136 - 157173 + g 72 -11.9 -3.31792 | opp_overlap 157167 157170, overlap 157121 CGCCGCCAAAGGCCT GCGTTACCTCCCAGCCG TCTC CGGCAGTGAAGTAGCGC TTCTCCAGATGCTGG Rfer_0158 158868 - 157597 - | allantoate amidohydrolase Rfer_0159 160097 - 158865 - | diaminopropionate ammonia-lyase TERM 158 159507 - 159517 + g 70 -3.2 -4.66163 | GTCAGAGATCACAAA CCAG CCA TTGG TTTTTGCGTCGCGGT Rfer_0160 160963 - 160112 - | RpiR family transcriptional regulator TERM 159 160850 - 160861 + g 70 -3.6 -4.72272 | overlap 160800 CTCGGTGGCGCTGTA GGCC AGCA GGTC TTTTTCATGGACCAG TERM 160 161953 - 161943 - g 75 -2.4 -4.92363 | opp_overlap 161952 AAATACTCACAAAAA TGGC TGG GCCG CGGTACCGGCGTGTT Rfer_0161 161181 - 161978 + | extracellular solute-binding protein Rfer_0162 162015 - 162677 + | amino acid ABC transporter permease TERM 161 163054 - 163030 - g 71 -7.1 -4.14511 | AACGCCATTCCAAAA GGCCAGTGG GAAGCCT CCACCAGCC TGGCGCTGAACTTTA Rfer_0163 162688 - 163332 + | amino acid ABC transporter permease TERM 162 163749 - 163711 - g 73 -10.1 -3.6284 | opp_overlap 163701 163699, overlap 163712 AAGGAGGAGGCCAAA GCCCGCGCCCAAGCGCT GCTGG AGCGCGTGGGATTGGGC AGCCTGTTTGACCGC Rfer_0164 163336 - 164094 + | ABC transporter related Rfer_0165 164145 - 165929 + | putative bifunctional OHCU decarboxylase/allantoate amidohydrolase TERM 163 166343 - 166319 - g 77 -4.1 -4.87318 | opp_overlap 166332, overlap 166320 166323 TTGAAAACGGAAAAA TTTACGGCCGC GCG GCGGCGGTGAG CAAGTGCGACTTCTC Rfer_0166 165970 - 167193 + | acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase TERM 164 167400 - 167376 - g 70 -4.1 -4.71426 | GCCCTATCAACAAAA CTGCTCGCTGC TGT GGTGCGACCAG ACGATGAAGACCGCC Rfer_0167 167332 - 167970 + | beta-lactamase-like TERM 165 168153 - 168163 + G 76 -5.4 -4.60889 | TGATGTGTTCGTGCT GTTC GGC GAAC TTTTTGGACGTGGTT TERM 166 168472 - 168457 - g 76 -6.1 -4.70659 | GCGCATATCGAAAAA TGCCG GGAAGT CGGCA TCAGGCGTTTCAGGG TERM 167 169295 - 169255 - g 74 -5.3 -4.54553 | opp_overlap 169269 169270 CACAAAGACAACAAA GCCCTGATCACCGATCTGC TGA GCAGCTTCGTGATCGAAGC CACCGGACCCCTGAT Rfer_0168 168082 - 169398 + | hypothetical protein TERM 168 169782 - 169767 - f 76 -3.2 -5.06816 | AGTCGTTAACAAAAA GGCG GGTTCAAA CGCC TACCGTGAGCTGAAC Rfer_0169 169851 - 170921 + | secretion protein HlyD TERM 169 172573 - 172604 + G 88 -13.8 -3.57263 | gap 1, overlap 172575 CCCAGCCAAAGGGCT TGCG-GCCAGGCTGC GCC GCAGTCTGGCACGTA TTTACAGCTACCAAT TERM 170 172575 - 172602 + G 81 -14.2 -3.36515 | gap 1, overlap 172573 CAGCCAAAGGGCTTG CG-GCCAGGCTGC GCC GCAGTCTGGCACG TATTTACAGCTACCA Rfer_0170 170918 - 173710 + | response regulator receiver domain-containing protein Rfer_0171 173712 - 174839 + | hypothetical protein Rfer_0172 175009 - 175545 + | hypothetical protein TERM 171 175529 - 175561 + F 76 -10.4 -3.6279 | GCACGCAGGGCCCGG GTCGTCCGGCGCAG TAGGT CCGCGCCGCACGCC TTCTTGGCCAGATTT Rfer_0173 175699 - 176055 + | hypothetical protein Rfer_0174 176068 - 176676 + | hypothetical protein Rfer_0175 176669 - 176950 + | hypothetical protein Rfer_0177 177400 - 177918 + | hypothetical protein Rfer_0178 177911 - 178387 + | MarR family transcriptional regulator Rfer_0179 178617 - 178910 + | HicA protein Rfer_0180 178907 - 179242 + | HicB Rfer_0181 180782 - 179328 - | dihydrolipoamide dehydrogenase Rfer_0182 180982 - 181188 + | hypothetical protein Rfer_0183 182005 - 181202 - | phosphonate ABC transporter inner membrane protein Rfer_0184 182973 - 182005 - | phosphonate-binding periplasmic protein TERM 172 182180 - 182199 + g 78 -5 -4.77036 | AAGCCCGAGAGCTTG GACAGCTT GAAG AGGTTGTC TTTTTCCTGCTGGCC TERM 173 182805 - 182788 - G 81 -4.9 -5.00884 | gap 1 ATCCGGGGCAAAAAA GGCATTGA CCT TCA-TGCC GGTCTTTTTGGCCAT Rfer_0185 183896 - 183015 - | phosphonate ABC transporter ATP-binding TERM 174 183566 - 183547 - G 78 -10.7 -3.86524 | overlap 183535 AGACTGCGCCACAAA GGCACGC GGTGCA GCGTGCC GGCCAGCACGTTGAC TERM 175 183663 - 183623 - G 72 -11.8 -3.36569 | gap 1, opp_overlap 183622 183623, overlap 183621 183627 TGAACTGCTGAAAGA CGAAGCCAACGCCC-GCGC GGGT GCGCCGGATGTCGGCTGCG ATTCTTCCGTTCTGC TERM 176 183659 - 183627 - G 70 -9.8 -3.45571 | gap 1, opp_overlap 183623 183622, overlap 183623 183621 CTGCTGAAAGACGAA GCCAACGCCC-GCGC GGGT GCGCCGGATGTCGGC TGCGATTCTTCCGTT TERM 177 184637 - 184618 - g 77 -3.4 -5.00616 | overlap 184595 184623 GCCGCCGGTAAAAAA GTCAACCG GCAG CGGCCGTC CGCTGGGCGAGATCA Rfer_0186 183947 - 185218 + | major facilitator transporter TERM 178 185237 - 185271 + T 71 -7.8 -3.96327 | opp_overlap 185259 185263, overlap 185238 CCGCGCCGCAGGGCC TCCTGCGCCTGG CACAAATCAAC CCAGGCGCGGGC TTTGTGCTGCGGGCT TERM 179 185238 - 185270 + T 71 -11.3 -2.97475 | opp_overlap 185259 185263, overlap 185237 CGCGCCGCAGGGCCT CCTGCGCCTGG CACAAATCAAC CCAGGCGCGGG CTTTGTGCTGCGGGC Rfer_0187 186105 - 185215 - | phage SPO1 DNA polymerase-related protein TERM 180 185452 - 185422 - G 74 -11.8 -3.53012 | overlap 185407 185423 GCCCTGCGCGGCAAA CCGGCCCAAGGCCA GGA TGACCTTGGGCTGC ACCAGGGCCACTTCG TERM 181 185451 - 185423 - G 77 -15.3 -2.71712 | overlap 185407 185422 CCCTGCGCGGCAAAC CGGCCCAAGGCCA GGA TGACCTTGGGCTG CACCAGGGCCACTTC Rfer_0188 186614 - 186147 - | ribosomal-protein-alanine acetyltransferase Rfer_0189 187330 - 186611 - | peptidase M22, glycoprotease TERM 182 186711 - 186676 - G 76 -9.6 -4.03234 | gap 1, overlap 186677 TGTCGCGGATATAAA GCGGCAGCGCCTGTCCC GCG GCGAC-GGCACCGCCGG CGCTCAGCAGGGCGG TERM 183 186710 - 186677 - G 72 -13.1 -3.01726 | gap 1, overlap 186676 GTCGCGGATATAAAG CGGCAGCGCCTGTCCC GCG GCGAC-GGCACCGCCG GCGCTCAGCAGGGCG TERM 184 187096 - 187064 - G 72 -11.3 -3.36823 | gap 1, overlap 187059 CGCGCCAAAAGCCAA GCCCTGCGCCACCG AGCAAG CGGT-GCGCAGGCC GGTGAACGAGCCCGG Rfer_0190 188383 - 187418 - | hypothetical protein Rfer_0191 188463 - 189962 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Rfer_0192 189949 - 190203 + | hypothetical protein Rfer_0193 190357 - 192348 + | hypothetical protein TERM 185 192405 - 192434 + G 77 -14.3 -2.71712 | gap 1, overlap 192410 AAGTTCCTCGCCATT GCCGCC-GCTGCCA TGC TGGCAGCTGGCAGC GTTTGCGCCCAGACC TERM 186 192410 - 192435 + G 86 -14.1 -3.53012 | gap 1, overlap 192405 CCTCGCCATTGCCGC CGCTGCCATGCT GGC AGC-TGGCAGCG TTTGCGCCCAGACCG Rfer_0194 192375 - 193058 + | OmpW TERM 187 193082 - 193111 + T 100 -17.9 -4.76041 | GCCTAACGCCTGACA TCCCCTGCGAGCC GAGA GACTCGCAGGGGA TTTTTCATGGCTGTC Rfer_0195 194285 - 193116 - | Sua5/YciO/YrdC/YwlC Rfer_0196 195514 - 194300 - | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 188 194660 - 194680 + g 71 -6.7 -4.23723 | opp_overlap 194660 CTCGTTCACGATCAA GCTGCCCAG CGT CTGCGCCGC TTTTGAGTCGTCTTG TERM 189 194906 - 194925 + g 75 -2 -5.00616 | opp_overlap 194906, overlap 194911 194912 CACGATCACCGAACA TTCGGCCT GCAA AGGCAGCA TTTTTTCCAGCACGC Rfer_0197 195978 - 195511 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 190 195646 - 195625 - G 90 -15.1 -3.60296 | CATGGCCACCGCAAA CAGCGCGGC GTTG GCCGCGCCG GCAGCGCCAATGGCG Rfer_0198 196037 - 197017 + | thioredoxin Rfer_0199 198479 - 197046 - | Iron-sulfur cluster binding protein Rfer_0200 199150 - 198476 - | hypothetical protein Rfer_0201 199950 - 199147 - | protein of unknown function DUF224, cysteine-rich protein Rfer_0202 200874 - 200101 - | GntR-like TERM 191 200530 - 200487 - G 70 -13 -2.87564 | CCAGCGCTGCATAGA CGGCGTCCAGGCGCTGGATG TCGA CATCCAGCGCGCGCTCGGCG GCCAGGCAGGCGGCC TERM 192 200531 - 200549 + g 77 -11.7 -3.5936 | AGCGCGCGCTCGGCG GCCAGGC AGGCG GCCTGGC TTTCCAGCATTTGGC Rfer_0203 201844 - 200927 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 193 200988 - 201012 + g 70 -3.3 -4.63486 | opp_overlap 200983, overlap 200989 TTGGCAATCACCTCG TCGGGCACGCG TGG CGCGGGCGGGG TTTTGTTCCAGGGCT TERM 194 202072 - 202051 - R 91 -14.5 -3.06183 | opp_overlap 202054, overlap 202054 GGCAGGCCCATGCAA GAAGCCACC CGCA GGTGGCTTC TTGAACGCTACCAAG TERM 195 202054 - 202069 + r 76 -10.4 -3.62597 | opp_overlap 202051 202054 AGGCCCATGCAAGAA GCCACC CGCA GGTGGC TTCTTGAACGCTACC TERM 196 202069 - 202054 - R 76 -10.4 -3.67775 | opp_overlap 202054, overlap 202051 AGGCCCATGCAAGAA GCCACC CGCA GGTGGC TTCTTGAACGCTACC Rfer_0204 203164 - 202100 - | fructose-1,6-bisphosphate aldolase TERM 197 202153 - 202170 + g 70 -3.5 -4.62471 | gap 1, overlap 202147 202143 GCCCCGCCACCACGC TCAATGAG TGG CTC-TTGA TTTTTGAACCTTGAC TERM 198 203219 - 203242 + r 77 -11.6 -3.53012 | opp_overlap 203221 GCCTGAATTTTAACG GAGCGGCGCG GTTG CGCGCTGCAC TTTGACGCCGGCGCC Rfer_0205 204900 - 203470 - | pyruvate kinase Rfer_0206 205666 - 205013 - | OmpA/MotB TERM 199 205848 - 205858 + r 77 -8.2 -4.13014 | overlap 205840 GAACAGCGGGTACGA CGGG GGA CCCG TTTTAAGCCTGTGCG Rfer_0207 206689 - 205907 - | hypothetical protein TERM 200 206269 - 206282 + g 78 -2.3 -5.03314 | overlap 206261 CCACCGCCACACTTT GCCAG TGCG CTTGC TTTTTTCCGGCTCGC TERM 201 206800 - 206782 - R 100 -13.2 -5.70829 | AATACTATAAAAAAA TGCCGACT GAT AGTCGGCA TCGTGGGTGTCGCGC Rfer_0208 207367 - 206825 - | cytochrome c, class I TERM 202 206950 - 206969 + g 70 -3.4 -4.67234 | opp_overlap 206911, overlap 206951 CCTGAAATTCACCGC CGCCCTGG GCAA CCATGGCA TTTTTACCCTTGAGT Rfer_0210 208678 - 207965 - | ABC transporter related Rfer_0211 209417 - 208680 - | ABC transporter related TERM 203 209064 - 209094 + g 71 -6.7 -4.14392 | CATGCTGGCACTGCA GCGCTGGGCATCG CTCCA CCAGGCCCAGGGC TTTTGCACATTGGCC Rfer_0212 210432 - 209419 - | inner-membrane translocator Rfer_0213 211328 - 210447 - | inner-membrane translocator Rfer_0214 212522 - 211341 - | extracellular ligand-binding receptor TERM 204 211377 - 211401 + g 71 -6.3 -4.4078 | overlap 211366 211380 GGGGTCGGCCAGCGC CTTGCTGGCGA TGC TTGCCAGCTTG TTTTCCTTGCCGCCG TERM 205 211380 - 211398 + g 93 -11 -4.32402 | overlap 211366 211377 GTCGGCCAGCGCCTT GCTGGCGA TGC TTGCCAGC TTGTTTTCCTTGCCG Rfer_0215 213334 - 212519 - | alpha/beta hydrolase TERM 206 213203 - 213175 - G 82 -11.7 -3.96148 | GCGCCGCATCACAAA GGCGCTGCGGAAA GTC CTTCCACATCGCC AGCGAGCCCAGTCCC Rfer_0216 214929 - 213331 - | benzoate-CoA ligase family Rfer_0217 216540 - 214978 - | aldehyde dehydrogenase TERM 207 216432 - 216406 - G 71 -9.2 -3.75153 | GCGGGCGAAGGCAAA GCCTGCGGCCAG GTC CAGGCCGGTGGC ATCCACGCGCACCAG Rfer_0218 217010 - 216546 - | hypothetical protein Rfer_0219 217100 - 218074 + | anaerobic benzoate catabolism transcriptional regulator TERM 208 218424 - 218445 + G 71 -6.5 -4.26903 | gap 1, overlap 218432 GCGCACCGTGGTGGT CACCTCGGCC CGC GACCG-GGTG TTTTGCTCCGGTGCC Rfer_0220 218122 - 219849 + | enoyl-CoA hydratase Rfer_0221 219922 - 221349 + | benzoyl-CoA oxygenase component B Rfer_0222 221364 - 222635 + | oxidoreductase FAD/NAD(P)-binding Rfer_0223 222635 - 223432 + | enoyl-CoA hydratase/isomerase TERM 209 223928 - 223939 + G 81 -5.8 -4.78149 | opp_overlap 223916 223917, overlap 223918 223917 AAACCGCAGCGGCAG TGGC CGCG GCCA TTTTTGACTTGTCCA TERM 210 224614 - 224640 + G 70 -10.1 -3.53091 | gap 1 GCCTGGACACGTGCG GCCCCGCGCTGG CTCG CCA-CGCTGGGC TTTAAGCCGCAGCGT Rfer_0224 223456 - 224937 + | 3-hydroxybutyryl-CoA dehydrogenase TERM 211 225344 - 225318 - g 70 -4.3 -4.44667 | overlap 225319 CTGTTCAATAACAAA GGCACCGAGGT GCTTG ACCTGGAAGCC ACCAGCCTGTTTGAC Rfer_0225 224934 - 225389 + | MaoC-like dehydratase TERM 212 226038 - 226028 - g 83 -2.4 -5.24531 | ATCTCGCAGAAAAAA GGCG ACC CGCT GCTGGTGACGCAAGA Rfer_0226 225386 - 226588 + | beta-ketoadipyl CoA thiolase Rfer_0227 227182 - 226601 - | hemerythrin HHE cation binding protein Rfer_0228 228827 - 227325 - | hypothetical protein Rfer_0229 229271 - 228957 - | hypothetical protein Rfer_0230 230013 - 229420 - | transcriptional regulator Rfer_0231 230160 - 231443 + | FAD dependent oxidoreductase Rfer_0232 231496 - 232242 + | extracellular solute-binding protein Rfer_0233 232263 - 232916 + | amino acid ABC transporter permease Rfer_0234 232916 - 233647 + | ABC transporter related Rfer_0235 233909 - 234439 + | AsnC family transcriptional regulator TERM 213 234969 - 234942 - g 72 -2.7 -4.82901 | gap 1 CGCCCGGTACAAAAA TCG-CGGTTCTA TTTGG CAGCACCGGCGA GAAGCTGGCAAAAAC Rfer_0236 234503 - 235303 + | extracellular solute-binding protein Rfer_0237 235386 - 236054 + | amino acid ABC transporter permease Rfer_0238 236065 - 236715 + | amino acid ABC transporter permease Rfer_0239 236787 - 237512 + | ABC transporter related Rfer_0240 237561 - 238838 + | FAD dependent oxidoreductase Rfer_0241 238882 - 239595 + | hypothetical protein TERM 214 240247 - 240222 - g 70 -3.2 -4.63218 | overlap 240225 GCTGTTGCAACAAAA TGAGGCCAGC GACTGG GCCGACATCA TGCCGCGCTCTGGCT Rfer_0242 239737 - 240939 + | hypothetical protein Rfer_0243 241338 - 241060 - | hypothetical protein Rfer_0244 242285 - 241500 - | cytochrome c family protein TERM 215 242535 - 242524 - H 79 -7.2 -4.50761 | opp_overlap 242523 ACCAATTGAAAGAAA GCCG AATG CGGC CCTTCATGTTGCCCA Rfer_0245 242779 - 243378 + | hypothetical protein TERM 216 243390 - 243367 - f 75 -12.5 -2.60194 | opp_overlap 243354 243367, overlap 243366 ATCGTCTCAATCAAG CGAGGCGTT TGATCG AACGCCTCG TTTTAAAAGAGTGAA TERM 217 243367 - 243390 + F 100 -13.2 -4.08767 | opp_overlap 243367 243366, overlap 243354 ATCGTCTCAATCAAG CGAGGCGTTT GATC GAACGCCTCG TTTTAAAAGAGTGAA TERM 218 244227 - 244215 - g 79 -7.7 -4.48987 | overlap 244217 244218 CTTTCACAAGGAAAA GATGG CGG CCATC GGCTCGCTAGCCGCA Rfer_0246 243487 - 244908 + | histidine kinase TERM 219 245482 - 245496 + G 70 -3.5 -4.60041 | gap 1, opp_overlap 245477 245482 AACGATCAGAGCAAG CGGCGC ACTG GC-CCG TTTTTGCAGGTCAAT TERM 220 245590 - 245602 + G 91 -6.2 -5.40072 | ACCGGTGCCGATCAT GCCC GCAAG GGGC TTTTTTTGCAGGCCA TERM 221 245880 - 245891 + G 90 -5.8 -5.26875 | GCAGACGGACATGCC CGGA CTGA TCCG TTTTTTGCTTCACAA Rfer_0247 244915 - 246318 + | two component, sigma54 specific, Fis family transcriptional regulator Rfer_0248 246341 - 247348 + | putative hydrolase transmembrane protein Rfer_0249 247940 - 247380 - | hypothetical protein Rfer_0250 248677 - 247937 - | hypothetical protein TERM 222 248359 - 248336 - G 76 -5.3 -4.66609 | CATGCTACGGAAAAA TGCTTGATC ATGACA GGTCAAGCA GAAATCCTTGCCATG Rfer_0251 249260 - 248715 - | hypothetical protein Rfer_0252 249684 - 250364 + | cytochrome c family protein TERM 223 250424 - 250437 + G 72 -2.3 -4.84492 | AATGACCCCTACACG CGGTG CTTT TGCCG TTTTGTTCTCGTTCG TERM 224 250555 - 250536 - g 70 -4.9 -4.56597 | overlap 250537 GTGTTGGCCGAAAAA GCCGCTG CTGCGC CAGCGGG ACGTGCGTCCGCACC Rfer_0253 250410 - 251522 + | hypothetical protein Rfer_0254 251525 - 252337 + | tetratricopeptide TPR_2 Rfer_0255 252623 - 253312 + | cytochrome c family protein TERM 225 253346 - 253386 + F 72 -11.1 -3.09015 | gap 1, opp_overlap 253370 AGCGTTTAGACCCGG CTCGCACGGCCAAGGCGG AACAAG CCGCTCAGGCCGTGC-AG TTGGGTAGATATCAA TERM 226 253861 - 253835 - g 78 -3 -5.06414 | gap 1, overlap 253837 CTCGGCGAAGAAAAA GTCGAGGACGC CTTGGT GCGTCCTT-AC GGCGTGGCGATGTCC Rfer_0256 253580 - 254734 + | NHL repeat-containing protein Rfer_0257 254793 - 256850 + | hypothetical protein TERM 227 257777 - 257795 + G 71 -6.7 -4.2828 | AATGATCGCGGTGAG TTCTGGC TGCCT GCCGGAA TTTTCATAGATGAAA Rfer_0258 256853 - 257884 + | NHL repeat-containing protein TERM 228 258313 - 258329 + G 78 -3 -5.09762 | gap 1 GGCACTGACTTGTCA GACGACC ATCC GGT-GTC TTTTCTTTATTCGAG Rfer_0259 257923 - 259638 + | hypothetical protein Rfer_0260 259727 - 260365 + | hypothetical protein Rfer_0261 263909 - 260475 - | hypothetical protein TERM 229 260799 - 260829 + g 100 -9.7 -5.01535 | gap 1, overlap 260800 CGGCATACTCGCCGC AGCAGCGGGA-GCG CCGC CGCCTTCCGCTGCC TTTTTCTGCTTGTCG TERM 230 260800 - 260828 + g 88 -13.2 -3.59837 | gap 1, overlap 260799 GGCATACTCGCCGCA GCAGCGGGA-GCG CCGC CGCCTTCCGCTGC CTTTTTCTGCTTGTC Rfer_0262 266178 - 264127 - | phosphate acetyltransferase Rfer_0263 266890 - 266435 - | MarR family transcriptional regulator Rfer_0264 268715 - 267006 - | acyl-CoA dehydrogenase-like TERM 231 267941 - 267961 + g 76 -5.3 -4.68724 | overlap 267942 AACGCATGACGCAGG TGGCGCTGC CGT GCAGGCCCA TTTTCTCTTCGATGC TERM 232 268246 - 268258 + g 70 -3.3 -4.58395 | ATGGTGGCCAACCAT TCGCC GGT GGCAA TTTTTCCCAGGTAAC Rfer_0265 269854 - 268733 - | porin TERM 233 269985 - 270002 + r 70 -6.9 -4.13561 | opp_overlap 269984 269985 269987, overlap 269988 269988 GTTTGCTGCTGAAAT CAGGGCC GGGT GGCCGTG TCTTTTTTGCGCGCC TERM 234 269988 - 270004 + r 74 -2.2 -5.00616 | gap 1, opp_overlap 269987 269985 269984, overlap 269988 269985 TGCTGCTGAAATCAG GGC-CGG GTGG CCGTGTC TTTTTTGCGCGCCGC Rfer_0266 270733 - 269984 - | ABC transporter related Rfer_0267 272531 - 270735 - | ABC transporter related Rfer_0268 273570 - 272533 - | inner-membrane translocator TERM 235 272937 - 272926 - G 70 -4.4 -4.56597 | GGTGCGGTTGAAAAA TTGC CACA GCAA CACAATCATCGCCAG TERM 236 273387 - 273401 + g 74 -11.4 -3.55444 | opp_overlap 273376 GCAACCAGACCGTGC CCGGCA CCT TGCCGG TTTGAAAAATGGCCA TERM 237 273613 - 273588 - R 78 -2.5 -5.24129 | gap 1, overlap 273590 273594 273595 TGGGCCCAGAAAAAA TAGAGATTGCCC CAA GGGC-AGCCCCA GGCTGCCCTTGACCT TERM 238 273612 - 273590 - R 77 -7.6 -4.25873 | overlap 273588 273594 273595 GGCCCAGAAAAAATA GAGATTGCCC CAA GGGCAGCCCC AGGCTGCCCTTGACC Rfer_0269 274793 - 273660 - | extracellular ligand-binding receptor TERM 239 273917 - 273927 + g 79 -8.2 -4.44797 | GGTTGCGTGACCCCG GGCC ATA GGCC TTTTCGTATTGCTGC Rfer_0270 275277 - 274861 - | 4-hydroxybenzoyl-CoA thioesterase Rfer_0271 276051 - 275287 - | short-chain dehydrogenase/reductase SDR TERM 240 275975 - 276030 + g 70 -12.4 -2.89714 | gap 1 TTGGCACCCAGGCGG GC-CAGTTCGCGGGCGGTGGCTTCGCC CAA GCCGGAGCCACCACCGGTGACCAGAGC TGCTTGTCCTTGAAT Rfer_0272 277403 - 276153 - | Acetyl-CoA C-acetyltransferase TERM 241 276855 - 276828 - G 70 -9.8 -3.53224 | opp_overlap 276843, overlap 276843 CACTGCCTTGGCAAA GGAGCTGGAGGC AAAG GCATCCACCTCC TCGCGGGTGATGCCG Rfer_0273 279276 - 277417 - | feruloyl-CoA synthase TERM 242 279074 - 279087 + g 81 -8.1 -4.66833 | overlap 279073 TTCCACTCGCCCTTG CTGCC ATCC GGCAG TTTTTCACGTTGCGC Rfer_0274 280141 - 279359 - | enoyl-CoA hydratase Rfer_0275 280255 - 281118 + | amidohydrolase 2 TERM 243 281472 - 281508 + G 70 -4.9 -4.4648 | overlap 281501 GCATTGGTTTGCAAC GGCTGGGGGCGATCGCA GGC TGGCATCGCGCCGCGCC TTTTATGGTGGGCAT Rfer_0276 281156 - 281860 + | hypothetical protein Rfer_0277 282772 - 281882 - | NmrA-like TERM 244 282363 - 282379 + g 73 -9.4 -3.91897 | GTCCAGCCCTTGAGC GCGCTG CTGGC CAGCGC TTTCTCGGTGCCGGC Rfer_0278 282960 - 283346 + | putative transcriptional regulator TERM 245 283554 - 283544 - f 100 -8.2 -5.60993 | TTGTCTATAAAAAAA GCCC TTG GGGC AAAATCCCGCCATGA Rfer_0279 283566 - 284042 + | MarR family transcriptional regulator TERM 246 284265 - 284236 - g 78 -4.2 -4.78764 | gap 1, opp_overlap 284257, overlap 284237 GAAATCGACGAAAAA CCGCTGGGCCGCA CCATC TGCGGCG-AGCGC ATCGCCTTCTATCGC TERM 247 285217 - 285202 - g 72 -2.4 -4.7254 | opp_overlap 285207, overlap 285205 285206 285207 ATTGCGCAGGAAAAA CAAGGC GCTG GCCCAG TCGGCACCAGCGTTT TERM 248 285225 - 285205 - g 70 -4.5 -4.47707 | opp_overlap 285207, overlap 285202 285206 285207 GCGCAGGAAAAACAA GGCGCTGGC CCA GTCGGCACC AGCGTTTGAGGGGCA Rfer_0280 284179 - 285234 + | Rieske (2Fe-2S) protein Rfer_0281 285245 - 286216 + | ferredoxin Rfer_0282 287214 - 286528 - | hypothetical protein TERM 249 287426 - 287438 + H 77 -7.7 -4.37247 | overlap 287388 287431 AGTTCAGCTGGCGGT TCGCT GGA AGCGA TTTATTGCTTGCTTT Rfer_0283 287482 - 287922 + | MarR family transcriptional regulator TERM 250 288798 - 288767 - g 74 -11.5 -3.53091 | ATTCCTTGGCCGAAA GCGCTCAGGTTCG GATCTG CGAACCAGGGCGC CAAGCAGATCTCCCG Rfer_0284 287927 - 288817 + | hypothetical protein Rfer_0285 288839 - 289435 + | hypothetical protein Rfer_0288 290698 - 291870 + | extracellular ligand-binding receptor TERM 251 292200 - 292220 + G 89 -11.1 -4.18494 | opp_overlap 292199 292200, overlap 292202 CCGCTGTACCACAAG CCGCACCTG GAC CAGGTGCTG TTTTCCATCGGCCTG TERM 252 292202 - 292218 + G 82 -12.3 -3.69216 | opp_overlap 292200 292199, overlap 292200 GCTGTACCACAAGCC GCACCTG GAC CAGGTGC TGTTTTCCATCGGCC Rfer_0289 291939 - 292811 + | inner-membrane translocator TERM 253 293479 - 293503 + G 82 -14.9 -3.14132 | overlap 293501 CTACACGGTGGCAGC GGCCCTGGCCG GAG CGGCAGGGGCC TTGCTGGCGCAAACC Rfer_0290 292811 - 293788 + | inner-membrane translocator Rfer_0291 293785 - 294591 + | ABC transporter related TERM 254 294943 - 294892 - g 90 -14.3 -3.42078 | CACAGTGCATGAGAA CCTGACCGCG-GTGGCCCGCCCGGC CCGC GCCGGACGGGCCTCACGCC-CCTGG ACTCCCGAGCGTGTC Rfer_0292 294584 - 295321 + | ABC transporter related Rfer_0293 295389 - 296012 + | hemerythrin HHE cation binding protein TERM 255 296017 - 296047 + T 73 -10.3 -3.35639 | gap 1 GCGAGGACTGATCGA CCGGGGGG-AGGGG CACG CCGCAGCCCCCCGG TTGCTTCCCGCTCTT Rfer_0294 296913 - 296062 - | protocatechuate 4,5-dioxygenase subunit beta TERM 256 296206 - 296216 + g 81 -4.6 -5.00884 | overlap 296180 296178 CAGCAGCTCGATGCC CTGG GTG CCGG TTTTTTCCACCAGCT TERM 257 296847 - 296819 - G 91 -5.9 -5.41746 | opp_overlap 296819 AAGCCGTCAAAAAAA GGCTTCCAGTACG GGT CTTGCTGCAAGCC TTTGTGGATTGCGCC Rfer_0295 297282 - 296929 - | protocatechuate 4,5-dioxygenase subunit alpha TERM 258 297498 - 297539 + G 76 -10.1 -3.72695 | gap 1, overlap 297501 GGGTTCCATCACCGG TGCCGCGCAG-CGCCTGGGT GTG ACCCAGTCGGCTGTGAGTCA TTTGCTGGACAAACT Rfer_0296 297415 - 298338 + | LysR family transcriptional regulator Rfer_0297 299269 - 298346 - | AraC family transcriptional regulator TERM 259 299305 - 299290 - H 70 -5.4 -4.41895 | AATTTTGAATGAAAA GTACCA GCAC TGGCAC ACCTTTTTGCAGTGC Rfer_0298 299379 - 300557 + | cytochrome P450 Rfer_0299 300562 - 300885 + | ferredoxin TERM 260 300962 - 300938 - g 70 -10.6 -3.53091 | opp_overlap 300937 300938 AGGCCGGTGTGCAAA CCGCCGAGGC CCTGC GCGCCGGCGG CTTTGCCGGCGCCAT Rfer_0300 300889 - 302124 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rfer_0301 302497 - 302177 - | hypothetical protein Rfer_0302 303717 - 302713 - | aldo/keto reductase Rfer_0303 303859 - 304545 + | TetR family transcriptional regulator TERM 261 304580 - 304565 - f 74 -2.6 -5.00616 | TTTTTTGCCAAAAAA TATGAC GATC ATCATA CGAAATTCCAAGATA TERM 262 304694 - 304680 - g 85 -5.6 -5.08824 | overlap 304682 TCGCTATGGAAAAAA GAGCGC GTT GCGCTT GGCAGATGTGCCAAC TERM 263 304692 - 304682 - g 75 -8.2 -4.17608 | overlap 304680 GCTATGGAAAAAAGA GCGC GTT GCGC TTGGCAGATGTGCCA Rfer_0304 304645 - 305646 + | zinc-binding alcohol dehydrogenase Rfer_0305 305681 - 306385 + | short chain dehydrogenase TERM 264 306604 - 306630 + G 71 -6.6 -4.19704 | gap 1 CGCCATCGCCCAACG GGCTGGGCTAT CCCCGC AT-GCCCGGCC TTTTCAATGCCGTTC Rfer_0306 306423 - 307499 + | NADH:flavin oxidoreductase/NADH oxidase Rfer_0307 307517 - 308485 + | alpha/beta hydrolase Rfer_0308 308539 - 309339 + | short-chain dehydrogenase/reductase SDR Rfer_0309 309384 - 310370 + | zinc-binding alcohol dehydrogenase Rfer_0310 310357 - 311211 + | short-chain dehydrogenase/reductase SDR Rfer_0311 311249 - 312094 + | alpha/beta hydrolase Rfer_0312 312148 - 312546 + | hypothetical protein TERM 265 312899 - 312884 - g 75 -7.6 -4.17762 | overlap 312892 CACCCGGGAAAACAA TCAACC AAGG GGTTGA ATGCGTACAACCTCG Rfer_0313 312554 - 313798 + | NADH:flavin oxidoreductase/NADH oxidase Rfer_0314 313865 - 315076 + | major facilitator transporter Rfer_0315 315154 - 315717 + | phenylacetic acid degradation-related protein Rfer_0316 316023 - 316151 + | hypothetical protein Rfer_0318 317961 - 316348 - | glucose-methanol-choline oxidoreductase Rfer_0319 318766 - 318065 - | OmpW Rfer_0320 319670 - 318867 - | short chain dehydrogenase Rfer_0321 321184 - 319673 - | AMP-dependent synthetase and ligase TERM 266 320052 - 320064 + g 70 -4.1 -4.62336 | CCGGTGTGCAACCAG CCATT GAC GATGG TTTTTGCGGTGGCGT Rfer_0322 321745 - 321278 - | hypothetical protein TERM 267 321492 - 321503 + g 76 -5.8 -4.62471 | GGCGCGTCCTTGAGC GTGC CCTC GCAC TTTTTGCACGTTGGA Rfer_0323 322697 - 321747 - | alpha/beta hydrolase Rfer_0324 323668 - 322694 - | enoyl-CoA hydratase/isomerase TERM 268 323320 - 323288 - G 85 -6.2 -5.0538 | GTTCATCCGAAAAAA GGTCTCGTGCAGCT TGTCG AGCTGCATGCCACC ATCCAGTGGCGTTAG Rfer_0325 323822 - 324535 + | TetR family transcriptional regulator Rfer_0326 325664 - 326134 + | CreA Rfer_0327 327445 - 326141 - | lytic murein transglycosylase TERM 269 326480 - 326459 - G 82 -11.5 -3.96148 | GCTGCCGACCAGAAA GGCTGGCCC GCGC GCGCCAGCC GGAAGCAGGATGGAG Rfer_0328 328236 - 327448 - | hypothetical protein Rfer_0329 329281 - 328325 - | oxidoreductase-like TERM 270 329129 - 329149 + g 72 -2.4 -4.75934 | overlap 329131 GGTGGTGACGTGCTT GATGCCGT ATCGG GCGGCGAC TTCTTTTGTTTTTTC Rfer_0330 330163 - 329282 - | protocatechuate 4,5-dioxygenase subunit beta TERM 271 329356 - 329343 - G 77 -3.1 -4.98436 | gap 1, opp_overlap 329355 GGAACATGATAAAAA CGGTGT CTA AC-CCG CACGCTACCTGCGTG Rfer_0331 330609 - 330166 - | protocatechuate 4,5-dioxygenase subunit alpha Rfer_0332 331558 - 330617 - | amidohydrolase 2 TERM 272 331353 - 331323 - G 84 -11.8 -4.07687 | ACGTTTTTCTCAAAA CCCAGGTGGTCGCG CAG CGCAAACAGCTGGG CCTTGGACGCATCAC TERM 273 331617 - 331583 - H 71 -4.2 -4.66537 | opp_overlap 331571 CGTGCCAAGACAAAA GTTGTGTTGGCTGC ATTGTCA GCAGCCGACTTAAC CCTGACTACGTGCAT Rfer_0333 331910 - 332434 + | hypothetical protein TERM 274 332691 - 332675 - g 89 -4.3 -5.26875 | opp_overlap 332675 CCTGGAAGCAAAAAA GCACGGC TTG ACGGTGC TTTGCCTTGACCGGT Rfer_0334 332553 - 333386 + | alpha/beta hydrolase TERM 275 334860 - 334878 + G 73 -8.8 -3.95073 | opp_overlap 334864, overlap 334856 TCGGACGAGTATCGA GCAAGACG TCT CGACTTGC TTTATGCGTATGGGC Rfer_0335 333633 - 335267 + | hypothetical protein Rfer_0336 336582 - 335656 - | 6-phosphogluconate dehydrogenase, NAD-binding TERM 276 335788 - 335752 - G 70 -10 -3.53012 | opp_overlap 335757 GCCTTTTTCTCCAAA CCAGCCCTGGTCGGCC CCGTC GGCCACCCAGGTTTGG CGCTCGGCGGTGCCG TERM 277 336318 - 336292 - G 83 -2.2 -5.27923 | gap 1, overlap 336293 GAAGTCCAGAAAAAA CGTGC-CCGGC TGCACC GCTGGCGCACA GGCCTGCGCCACCCC TERM 278 336592 - 336625 + r 74 -11.1 -3.17797 | gap 1, overlap 336595 GTTCATGGTGTTTTG GTGCTGTAGCCCAGGT GGA ACCTGGGCTG-AGTGC TTCAATCTATATAGC Rfer_0337 337310 - 336627 - | hypothetical protein TERM 279 337386 - 337343 - R 71 -7.4 -4.00042 | gap 1, opp_overlap 337340 337336 GGTGGCACGAAATAA TTGGGGTCAGGTCTGATTCGC TGC GCTCA-CGAACCCGACCCCAA ATATTTCTTATTGGC Rfer_0338 338422 - 337394 - | amidohydrolase 2 TERM 280 338454 - 338476 + r 71 -10.6 -3.19522 | AGTGTTTTTGGCCTC TAGCCAAGGT AAA ACCTTGGCGA TTAGCTATTAAATAG Rfer_0339 339704 - 338499 - | 4-hydroxybenzoate 3-monooxygenase Rfer_0340 340488 - 339778 - | putative ABC transporter, periplasmic molybdate binding protein Rfer_0341 340563 - 341504 + | LysR family transcriptional regulator TERM 281 341539 - 341555 + F 90 -4.3 -5.38549 | opp_overlap 341539 341541, overlap 341541 TCGCAACAGCACACA GATAGGC TTA GCCTGCC TTTTTGTTCTTTGCG TERM 282 342229 - 342211 - g 73 -4.4 -4.59773 | opp_overlap 342224, overlap 342214 GGCCATTTTGAAAAA CATGGGCG TGG CGCCGCTG ATCCACCAGCCGTCT TERM 283 342593 - 342607 + G 74 -5.7 -4.46212 | opp_overlap 342601 342603 342604 GAGCTGGTGGAGGCG CTGCA AAACA TGCAG TTTTCTGCTGCAGAG Rfer_0342 341657 - 342703 + | aldo/keto reductase TERM 284 343098 - 343137 + G 80 -10.1 -4.08216 | gap 3, overlap 343099 343105 TGTATGTGCCGGGCA TCCGGCTGCGCGCCGTCCAT TTC ATGG-CGGCG-GC-GCTGGG TTTTGCCGGCGCTGC TERM 285 343274 - 343330 + G 78 -10.2 -3.85389 | gap 1, opp_overlap 343278 343279, overlap 343278 GCCAATTATTCGCTG CAAACCAAGCGCGTTGCGTTGAGCGGC AAGG GCTTTTCCAC-CACCGCGATTGGTTTG TTTGGCTTGTTGGCC TERM 286 343278 - 343326 + G 70 -5.2 -4.52669 | gap 1, opp_overlap 343278 343279, overlap 343274 ATTATTCGCTGCAAA CCAAGCGCGTTGCGTTGAGCGGC AAGG GCTTTTCCAC-CACCGCGATTGG TTTGTTTGGCTTGTT TERM 287 343438 - 343452 + G 95 -2.7 -5.71712 | overlap 343436 GGCCATGGGACTGGG GCCGC TGGGC GCTGC TTTTTTTCTGTGGGA Rfer_0343 342770 - 343639 + | hypothetical protein TERM 288 344071 - 344087 + G 88 -6.5 -4.88067 | overlap 344059 CGCGCTGGCGCTGGC TGAGCAG CAA CAGCTCA TTTTTGTCCATCCCT TERM 289 344569 - 344549 - g 78 -2.3 -5.09426 | overlap 344551 TTCAAGGGCAAAAAA GTCGGCCTG GTG CTGTCCGGC GGCAATATTGACCCC TERM 290 344621 - 344640 + G 72 -12.8 -3.05844 | overlap 344623 GAGCGCGGCATGGTG CGCGCCGG GCGG CTGGCGCG TATTCGCGTCAGCGC TERM 291 344623 - 344661 + G 80 -14.5 -3.01791 | gap 1, overlap 344621 GCGCGGCATGGTGCG CGCCGGGCGGCTGGCGCG TATT CGCGTCAGC-GCCCGGGA TATTCCCGGCACGCT Rfer_0344 343667 - 344866 + | threonine dehydratase Rfer_0345 344882 - 345097 + | hypothetical protein TERM 292 345406 - 345455 + G 83 -4.8 -5.07567 | gap 1, opp_overlap 345415, overlap 345400 GCGCCCGCTTTGGGC CGCAGGAGATCCGGCGCGCCAGC TTGAT GCTG-TGCGACGGTTCACATCCG TTTTTTGGCGTCTCA Rfer_0346 345267 - 346187 + | agmatinase Rfer_0347 346200 - 347501 + | FAD dependent oxidoreductase Rfer_0348 348983 - 347496 - | GntR family transcriptional regulator Rfer_0349 349070 - 349891 + | peptidase C26 Rfer_0350 349914 - 351281 + | glutamate--ammonia ligase TERM 293 352674 - 352632 - g 76 -9.2 -4.08394 | gap 1 ACACTGCTTTCAAAA CGGGCTGATCATGCGCGCC GTGGGT GAC-CGCATGATCATCGCG CCGCCATTGACCATG Rfer_0351 351343 - 352779 + | putative aminotransferase Rfer_0352 352870 - 354039 + | extracellular solute-binding protein TERM 294 354064 - 354094 + F 100 -12.7 -4.74706 | GGCTTGCTTGGTCAA GGGCTGTTTGTAC GCTGG GTATAAGCAGCCC TTTTTACGTGTTCGG TERM 295 354202 - 354182 - g 78 -6.9 -4.65895 | CTGGTGACCGAAAAA CTGGTCAAA CGC TTTGACGAG GCGGTGGCGGTTGAT Rfer_0353 354137 - 355237 + | spermidine/putrescine ABC transporter ATP-binding subunit Rfer_0354 355250 - 356167 + | binding-protein-dependent transport systems inner membrane component TERM 296 356417 - 356430 + G 70 -3.7 -4.70583 | overlap 356406 356416 GCCTCGGCGGTGCTC GCCAC TTTT GCGGC TTTTGTATTGGTGCG Rfer_0355 356177 - 357037 + | binding-protein-dependent transport systems inner membrane component TERM 297 357497 - 357515 + G 72 -11.7 -3.33696 | opp_overlap 357488 CGAAATCGCACCGAC GGCCAGC ACGGG GCTGGCC TTGATTCAGCGCGAG Rfer_0356 357099 - 358568 + | aldehyde dehydrogenase TERM 298 358817 - 358827 + F 70 -5.4 -4.50661 | overlap 358814 358822 CATGATCTGCAAGCC TGAC CCA GTCA TTTTGGTTGTCACTT TERM 299 358961 - 358976 + G 71 -6.8 -4.15044 | overlap 358973 CCGCGTGGCCTGTCC GTGGCT CATC AGCCGC TTTATTGACAGCACA Rfer_0357 358911 - 359345 + | hypothetical protein Rfer_0358 359352 - 360584 + | major facilitator transporter Rfer_0359 361451 - 360780 - | putative integral membrane protein Rfer_0360 361956 - 361474 - | tetratricopeptide TPR_2 Rfer_0361 363120 - 362149 - | patatin Rfer_0362 364391 - 363177 - | 6-phosphofructokinase TERM 300 363401 - 363379 - G 74 -3.4 -4.7497 | gap 1, overlap 363380 TCGACCGAGTAAAAA CCGGT-GCG CTTGAT CGCCACCGA GCCGTCGTGCCCGCC Rfer_0363 364629 - 365120 + | hemerythrin HHE cation binding protein Rfer_0364 366093 - 365140 - | response regulator receiver modulated CheW protein Rfer_0365 367530 - 366160 - | MltA TERM 301 366479 - 366469 - G 76 -6.8 -4.56597 | CTCTTCGCGGAAAAA CACG GTG CGTG GATTGCTCCACAACA Rfer_0366 371659 - 367514 - | hypothetical protein TERM 302 367887 - 367875 - G 88 -4.1 -5.49568 | overlap 367876 AAGTCAAAAGAAAAA CCTTC GCT GAAGA CGTCCCTGAAATCAA TERM 303 369171 - 369129 - G 76 -9 -4.07568 | opp_overlap 369166 GCGCCGCCGCGAAAA CCCAGCACGGCGGTGTAAGC CGT ACTGCCACTGGCATGCTGGG CCATGCGCGCTGCAA TERM 304 369688 - 369657 - G 71 -8.7 -3.73072 | AACTCGGCGATCAAA GCGTCGACCTTGC TGACCT GCAAGTTGGACGC CGCCCCCATCCTGGC TERM 305 372165 - 372130 - g 82 -14.6 -3.17051 | opp_overlap 372129 372128, overlap 372128 CGTTTACGACGAAGA CGGCGACACCGCCGGC GATA GCCAGGGGCGTGGCCG CATTTCAAATCAGGA TERM 306 372731 - 372709 - g 73 -4.9 -4.60041 | opp_overlap 372712 372718, overlap 372711 ACTGATGCCGAAAAA CA-CGGCGCAG GCA CTG-GCCGATG CCTATGTCTTTTTGC TERM 307 373053 - 373074 + G 70 -10.1 -3.53224 | GGGTGGCCAACTGGC GCGAGCACC CGCG GGTGCTGGC TTTGAAAGAAGAATC TERM 308 373274 - 373291 + G 70 -10.5 -3.48024 | overlap 373272 CGCCTGCTCGATGCG GCGCGCT GGCC GGCGCGC TATTTGCTGCTGCAC TERM 309 373953 - 373965 + G 82 -9.1 -4.39287 | opp_overlap 373953, overlap 373939 TGCTGGGCGACGACA CGCTG CGC CAGCG TTTTGATGTCATTCG Rfer_0367 371675 - 374404 + | glutamate-ammonia-ligase adenylyltransferase Rfer_0368 374558 - 376585 + | anaerobic ribonucleoside triphosphate reductase Rfer_0369 376587 - 376790 + | hypothetical protein Rfer_0370 376804 - 377520 + | ribonucleoside-triphosphate reductase, anaerobic-like TERM 310 377543 - 377566 + F 73 -5.2 -4.64157 | opp_overlap 377547, overlap 377547 AAGTAGTAACATTAG GCAATCAGGG TAAA CCCTGATCAC TTTTGTCCTTATTTG TERM 311 377989 - 377974 - g 76 -10.4 -3.7941 | CATGGTCTACAACAA GTGCGG CCTG CCGCAC ATCACCGCAGCCGCC TERM 312 378079 - 378067 - g 70 -10.5 -3.51329 | opp_overlap 378069 GATCGCGAACGACAA CGCGC TGG GCGCG GCGCTGGCGTATTTT TERM 313 378141 - 378120 - g 76 -13.7 -3.09492 | CGCTCAAGCTCAAGA CGGTCGCCG TCAT CGACGACCG CACGGCTTATGGCCA Rfer_0371 377600 - 378751 + | extracellular ligand-binding receptor TERM 314 378781 - 378804 + T 88 -13.2 -3.3907 | opp_overlap 378781 GCAGGCAATAAAAAA GGACTTGGCA TTTC TGCCGAGTCC TTGATTGAAATTTAA TERM 315 378804 - 378781 - T 100 -11 -5.4833 | opp_overlap 378781 GCAGGCAATAAAAAA GGACTTGGCA TTTC TGCCGAGTCC TTGATTGAAATTTAA Rfer_0372 380472 - 378967 - | methylmalonate-semialdehyde dehydrogenase TERM 316 379481 - 379463 - G 74 -7.4 -4.36914 | overlap 379464 CCCTGGTCCACAAAA CCCTTGAC CTT GTCAAGGT GCGCTTTGGTGACCA Rfer_0373 381833 - 380484 - | beta alanine--pyruvate transaminase TERM 317 382841 - 382878 + G 77 -11.3 -3.56568 | gap 1, overlap 382842 382854 382871 GCTTTTTCAGCATCG TGCGCGCCTCAC-CGC AGCCGTC GCGCGTGAGTCGCGCG TTTCGGGACTGCTTG Rfer_0374 381979 - 382932 + | LysR family transcriptional regulator Rfer_0375 383330 - 382956 - | hypothetical protein Rfer_0376 384039 - 383437 - | hypothetical protein TERM 318 384584 - 384604 + G 85 -6.7 -4.72986 | overlap 384580 CGCCTGTGCCTGCAG CGGCGTCTG GAC CCGGTGCCG TTTTTGCTGGGCCTG TERM 319 384897 - 384914 + G 85 -5.5 -5.0916 | gap 1, overlap 384897 384899 AGGGCCTGGTTGTTG CC-GCGGC GCT GCTGCTGG TTTTTCTGTTCACCG TERM 320 385134 - 385167 + G 82 -11.6 -3.91412 | overlap 385138 AAGGCGTGCACCTGG CTGACCCCGGCCCC CTGGTC GTGGCCGGGGTGGG TTTGTCGAATCTGCT TERM 321 385138 - 385163 + G 73 -13.2 -2.7083 | overlap 385134 CGTGCACCTGGCTGA CCCCGGCCCC CTGGTC GTGGCCGGGG TGGGTTTGTCGAATC Rfer_0377 384176 - 385441 + | putative membrane anion transport protein Rfer_0378 386215 - 385562 - | 17 kDa surface antigen TERM 322 386006 - 385960 - G 72 -12 -3.35679 | overlap 385961 CGGCGCCACCGACAA TGCCGAGCATGGTGGCAGCTGC CTT GCCGCCGCCCCCACCCACGGCG TTCCCCATAGCGCCC TERM 323 386005 - 385961 - G 78 -15.5 -2.61264 | overlap 385960 GGCGCCACCGACAAT GCCGAGCATGGTGGCAGCTGC CTT GCCGCCGCCCCCACCCACGGC GTTCCCCATAGCGCC Rfer_0379 389411 - 386337 - | acriflavin resistance protein Rfer_0380 390610 - 389408 - | secretion protein HlyD TERM 324 391096 - 391075 - g 70 -10.1 -3.53012 | opp_overlap 391073 391091 GCCGGTTCTTTCAAA TCACCCAGC AGAC GCGGGGTGA AGTGTTGACACCCTT Rfer_0381 390864 - 391364 + | hypothetical protein Rfer_0382 391417 - 392076 + | hypothetical protein Rfer_0383 392457 - 392077 - | glyoxalase TERM 325 392263 - 392281 + g 74 -11.6 -3.44848 | opp_overlap 392261, overlap 392261 392265 CTGGGTCAATGGATT CCCGCCGC TAA GCGGCGTG TCTTTGATGCGGCCG TERM 326 392265 - 392279 + g 76 -12.8 -3.29704 | opp_overlap 392261, overlap 392263 392261 GGGTCAATGGATTCC CGCCGC TAA GCGGCG TGTCTTTGATGCGGC Rfer_0384 392719 - 392468 - | phosphopantetheine-binding Rfer_0385 393969 - 392716 - | branched-chain alpha-keto acid dehydrogenase subunit E2 Rfer_0386 394955 - 393966 - | transketolase TERM 327 394910 - 394883 - G 87 -10.4 -4.30576 | CGCCCATCAGGAAAA CGCGCGGGTCCG ACTG CAGCGCCGCGCG CAGCGCCTCCCTCAG Rfer_0387 395959 - 394955 - | pyruvate dehydrogenase (lipoamide) Rfer_0388 397764 - 395956 - | acetyl-CoA synthetase TERM 328 397360 - 397342 - G 84 -10.2 -4.17089 | opp_overlap 397340 GCCAAAGGCGGAAAA CAGCGGGG TCA CCACGCTG CCATTCTTCAGCGCG Rfer_0389 398237 - 397785 - | signal-transduction protein Rfer_0390 398898 - 398245 - | transport-associated TERM 329 398997 - 398982 - H 83 -6.2 -4.84359 | overlap 398989 CCACGTTGAGAAAAA TCAAGT ACCC ACTTGA GCAATCAAGCAGACT Rfer_0391 399063 - 400100 + | hypothetical protein Rfer_0392 401055 - 400069 - | ribose-phosphate pyrophosphokinase Rfer_0393 401220 - 401630 + | hypothetical protein Rfer_0394 401649 - 402272 + | phosphoribosyltransferase Rfer_0395 402952 - 402305 - | dienelactone hydrolase TERM 330 402610 - 402582 - G 100 -20.3 -3.53091 | overlap 402559 ATGTTGTCGCCCAAA GCGGCGGCGGC CTGCAGC GCCGCCGCCGC CCCGGTGCTGGCGCC Rfer_0396 404048 - 402972 - | radical SAM family protein TERM 331 403827 - 403809 - G 74 -11 -3.53012 | CCCGGCCGTGCCAAA CGACAGCA CGC TGCTGCCG GGGTAAAAGTGGTTC Rfer_0397 404689 - 404048 - | AMMECR1 Rfer_0398 405494 - 404670 - | hypothetical protein TERM 332 404716 - 404737 + g 71 -5.7 -4.36914 | TGCCTGAACGCCAGC GCCGCGTAG CCCA CCACTCGGC TTTTGTCGCCCGCCG TERM 333 404856 - 404883 + g 80 -10.6 -4.12942 | GCAGGCCTGGTGGTG CGTGATGCTGCT GTTG AGCTGCATCATG TTTTGCACCGTTTCG Rfer_0399 405634 - 406542 + | chromosome replication initiation inhibitor protein TERM 334 406678 - 406667 - g 74 -5.8 -4.56597 | CTGCTGGCTGAAAAA GGCT TTGA AGCC ATGACGGTCGATGAG Rfer_0400 406565 - 407182 + | TetR family transcriptional regulator Rfer_0401 407669 - 407247 - | hypothetical protein Rfer_0402 408622 - 407783 - | alpha/beta hydrolase TERM 335 408254 - 408226 - G 85 -8.7 -4.66537 | CTGGCGAAGACAAAA CCAGCGCCTGCAC CGG ACGCAGGCCCAGG GCCACGAAGCGTGCG Rfer_0403 410157 - 408622 - | peptidase M20 TERM 336 409716 - 409750 + g 79 -15.8 -2.83271 | overlap 409714 ATTTCGGCGTCCAGG GTCCGAGGTCACTG CGCCAGC CGGTGACCTCGGGC TGCTTGTCCAGGTGG TERM 337 409860 - 409837 - G 80 -3.6 -5.0538 | opp_overlap 409846 409848, overlap 409839 409842 CGCCACTTCAAAAAA CAGCACCGGC GTGC GCCCGGGCAG GCGGATGATTTCCAG Rfer_0404 411358 - 410237 - | NADH:flavin oxidoreductase/NADH oxidase Rfer_0405 412020 - 411439 - | methionine biosynthesis MetW metX 413159 - 412017 - | homoserine O-acetyltransferase TERM 338 413092 - 413071 - G 84 -11.5 -4.10657 | CCATAGGTTTCAAAA CTCAGCGCG TAGC CGCGCAGAG AGGCGCCACTTTGCA Rfer_0407 415174 - 413213 - | ATP-dependent DNA helicase RecQ TERM 339 413260 - 413291 + g 84 -10.9 -4.07568 | gap 1 TGGCCAATTGCTGCC CCACCCAT-TGCCG CACCT CGGCATACGGGTGG TTTTCCAGCGCAGCG TERM 340 413614 - 413604 - G 95 -6.8 -5.40072 | overlap 413605 TCGCCGGCAAAAAAA GCCA GCA TGGC GTGGATGCGTGCAAT TERM 341 414452 - 414462 + g 83 -4.6 -5.02074 | overlap 414442 414441 CAGGTGCCGCGCTAC CTGC TCG GCGG TTTTTTGCAGGGTCA Rfer_0408 415421 - 415744 + | hypothetical protein Rfer_0409 416631 - 415810 - | AraC family transcriptional regulator TERM 342 416832 - 416849 + G 70 -4 -4.62069 | TGCTCAAGGCGACGG CGGCCG ACATTG CGCCCG TTTTTCAGATCGCCC TERM 343 417011 - 417040 + G 78 -4.9 -4.82901 | gap 1, overlap 417016 CTGGGCGAGGGCCTG CGCCACACCTGCGC CTC GCACATG-GTGGTG TTTTTGTACACCGCG Rfer_0410 416735 - 417676 + | hypothetical protein Rfer_0411 421053 - 417922 - | heavy metal efflux pump CzcA Rfer_0412 422679 - 421066 - | secretion protein HlyD TERM 344 421894 - 421930 + g 91 -4.2 -5.47218 | opp_overlap 421893, overlap 421895 TGCGATCTGATAGAG CGCCTCGCCGGGCATG AAACG CATGCCTTGCACGGCC TTTTTTTCCATCACG TERM 345 422208 - 422182 - G 77 -10.9 -3.65425 | gap 1, overlap 422184 GCTATAGACCTCAAA CA-GCGGCTGGC CTTT GCCAACCGCCTG GCCCGTGACGTTGAC TERM 346 422205 - 422184 - G 81 -13.7 -3.40558 | overlap 422182 TATAGACCTCAAACA GCGGCTGGC CTTT GCCAACCGC CTGGCCCGTGACGTT TERM 347 422449 - 422460 + g 78 -2.2 -5.03314 | gap 1, overlap 422418 GGCGATGTAGTCCAT G-CCC ATC GGGTC TTTTTTCGGCGTGGG TERM 348 422541 - 422573 + g 76 -14.1 -3.07994 | AAGTGCTGCCAGCGC CGGTGTCAACGGCGG CGG CCGTCGCTGACACGG TTCCCTGAGCTTGGG Rfer_0413 423947 - 422676 - | outer membrane efflux protein Rfer_0414 424608 - 423952 - | DSBA oxidoreductase TERM 349 424406 - 424387 - G 72 -11.4 -3.30441 | CACCAGCGGGTAGAA CTCGCGGC AGGT GCCGCAAG CGGGGTCGAAAAACT Rfer_0415 425024 - 424605 - | disulphide bond formation protein DsbB TERM 350 424994 - 424956 - G 85 -12.5 -3.71848 | gap 2, overlap 424924 424953 TTCGCTCATGAACAA GGCGCCCAG-TG-TCGCCA TGG CGGCGATCAGCCAGGCGCC AAAAACAAGCGTCCA Rfer_0416 425403 - 425053 - | hypothetical protein TERM 351 425720 - 425740 + H 100 -11.9 -4.76892 | TTGTAATGTTCCGGT CATGAGTCC GAC GGGCTCATG TTTTTACATTGGTGT Rfer_0417 425835 - 426116 + | hypothetical protein Rfer_0418 428674 - 426224 - | heavy metal translocating P-type ATPase TERM 352 426829 - 426786 - G 72 -11.6 -3.27475 | gap 1, opp_overlap 426783, overlap 426784 426787 426791 GTGGCCATCACAATA CGCAAGCCGGCGGCCTTGAGC GTC GC-CAAGGCCTCGGGCGTGCT GGACTTGATCGGATC TERM 353 426828 - 426787 - G 76 -15.1 -2.56271 | gap 1, opp_overlap 426783, overlap 426786 426784 426791 TGGCCATCACAATAC GCAAGCCGGCGGCCTTGAGC GTC GC-CAAGGCCTCGGGCGTGC TGGACTTGATCGGAT TERM 354 426824 - 426791 - G 74 -13.1 -3.2244 | gap 1, opp_overlap 426783, overlap 426787 426786 426784 CATCACAATACGCAA GCCGGCGGCCTTGAGC GTC GC-CAAGGCCTCGGGC GTGCTGGACTTGATC TERM 355 428118 - 428105 - G 71 -9.5 -3.81146 | GCCGCGAACGAAGAA GGGCC AACC GGCCC ACAGGACGATGGGCG Rfer_0419 429361 - 428717 - | hypothetical protein TERM 356 428769 - 428750 - G 89 -10.6 -4.63527 | opp_overlap 428748 428747 428751, overlap 428751 CCATGATGGCAAAAA GCGCGGCG TGTG CGCCGCGT AAGTTTCGAATTCCG TERM 357 428751 - 428768 + g 72 -14.1 -2.66326 | opp_overlap 428750 428751, overlap 428748 428747 CATGATGGCAAAAAG CGCGGCG TGTG CGCCGCG TAAGTTTCGAATTCC TERM 358 428768 - 428751 - G 81 -14.1 -3.37634 | opp_overlap 428751 428748 428747, overlap 428750 CATGATGGCAAAAAG CGCGGCG TGTG CGCCGCG TAAGTTTCGAATTCC TERM 359 429141 - 429153 + g 70 -10.5 -3.54424 | opp_overlap 429133 429141 GAAAGCAGGTCCAAA CCCGG ATA CCGGG TTTGCAGCCATCCCG TERM 360 429153 - 429141 - G 73 -10.5 -3.6003 | opp_overlap 429141, overlap 429133 GAAAGCAGGTCCAAA CCCGG ATA CCGGG TTTGCAGCCATCCCG Rfer_0420 429639 - 429358 - | hypothetical protein Rfer_0421 430179 - 429697 - | hypothetical protein TERM 361 429869 - 429888 + g 73 -9.3 -3.86202 | ATGTCGCCCATCATG GCCATGC CGTCCT GCATGGC TTTCATGTGCTCGGC Rfer_0422 430626 - 431309 + | two component heavy metal response transcriptional regulator TERM 362 431797 - 431812 + G 84 -4 -5.24129 | gap 1 ATTCATGCGCTCTTT CCAGCAG ACA CTG-TGG TTTTTTGTCGCCGGC TERM 363 432028 - 432039 + G 85 -5.8 -5.06816 | overlap 432008 GGAGGATGCCTTCCA TCGG ATTT CCGA TTTTTCTTCGGACAT Rfer_0423 431306 - 432694 + | heavy metal sensor signal transduction histidine kinase Rfer_0424 432858 - 433322 + | hypothetical protein TERM 364 433429 - 433411 - T 83 -11.7 -3.67976 | opp_overlap 433411 GTGACCAACCTGAAA TCCCGCC CTGGT GGCGGGA TTTTCTACTTTAACG TERM 365 433411 - 433429 + T 100 -11.7 -4.61566 | opp_overlap 433411 GTGACCAACCTGAAA TCCCGCC CTGGT GGCGGGA TTTTCTACTTTAACG Rfer_0425 433916 - 433434 - | hypothetical protein TERM 366 434201 - 434235 + G 76 -7.2 -4.56597 | opp_overlap 434220 TAGGTGTTGCGAATG CTTGTCTTGTGCAG CACAACC CTGCAAAGGACGAG TTTTTAGGCCACACC Rfer_0426 434107 - 434565 + | hypothetical protein TERM 367 434574 - 434625 + F 71 -7.8 -3.9392 | overlap 434576 434577 TATTTGACCCCCTCT TAAGCAGGCCCTCTGCTGCGCGGA TTGA TCCGTTTGGCAGTGTGCCTGCATC TTCTTTCGGATGGCC TERM 368 434576 - 434623 + F 74 -10.4 -3.55946 | overlap 434574 434577 TTTGACCCCCTCTTA AGCAGGCCCTCTGCTGCGCGGA TTGA TCCGTTTGGCAGTGTGCCTGCA TCTTCTTTCGGATGG TERM 369 434577 - 434622 + F 79 -13.9 -2.73085 | overlap 434576 434574 TTGACCCCCTCTTAA GCAGGCCCTCTGCTGCGCGGA TTGA TCCGTTTGGCAGTGTGCCTGC ATCTTCTTTCGGATG Rfer_0427 435022 - 435318 + | unusual protein kinase-like TERM 370 436166 - 436184 + G 73 -8.8 -3.90328 | opp_overlap 436168 TGACACGCTGGGCAA CACGCTGA TCA TCAGCGGG TTTGTCGGCATTGTC Rfer_0428 435321 - 436244 + | unusual protein kinase-like TERM 371 436491 - 436469 - g 85 -6.8 -4.84359 | overlap 436457 436471 TCACCCTGATAAAAA CCCGGGCAGC GCG GCCGCCAGCG AACGCCAGGCGCAGA Rfer_0429 436356 - 436691 + | heat shock protein DnaJ-like Rfer_0430 437631 - 436720 - | 2-hydroxy-3-oxopropionate reductase TERM 372 438924 - 438894 - g 70 -4 -4.68593 | gap 1, overlap 438896 GTGATGACCGAAAAA CAGCTGCGCC-TC TGGGTT GATGACGCAGCTC GCGCTGATATCGCGC Rfer_0433 438300 - 439064 + | short-chain dehydrogenase/reductase SDR Rfer_0434 440509 - 439184 - | major facilitator transporter TERM 373 439569 - 439549 - G 71 -5.3 -4.30576 | overlap 439533 GGCCGATTAGCAAAA CCGCCAGCA TTG CGCTTGCAG CCAGCGTGCCACCGA TERM 374 440265 - 440227 - G 73 -9.4 -3.9122 | overlap 440228 CACCGGCCCAAAGAA CGGCGACGAGTGCGCCCA CCC CGGCCGCAAGCATCGCCA GCGCCACTTCGGCCT Rfer_0435 441404 - 440514 - | NAD-dependent epimerase/dehydratase Rfer_0436 442124 - 441465 - | Asp/Glu racemase TERM 375 442213 - 442155 - R 100 -2.3 -6.01187 | gap 2, opp_overlap 442159 442178, overlap 442156 AATGAAATAAAAAAA TCAAGCGGCCGCGGCTTCCATGACCAC GTGCTGG GTGG-CTTGTT-GCCGCGACAGCTTGG CAGTGATGGCGCCCT Rfer_0437 443660 - 442155 - | ABC transporter related TERM 376 443606 - 443623 + g 76 -5.5 -4.67556 | TTACCCGATTCAATG CCTTCAC ACCA GCGAAGG TTTTTGAGATGTTCT Rfer_0438 444706 - 443711 - | periplasmic binding protein/LacI transcriptional regulator TERM 377 444705 - 444692 - G 71 -5.3 -4.3665 | opp_overlap 444692 CAAGTTAAAGATAAA TGCTT TTTG AAGCA TGAATTCACGTTCGC Rfer_0439 445749 - 444751 - | inner-membrane translocator Rfer_0440 447088 - 446021 - | tartrate dehydrogenase TERM 378 446668 - 446621 - G 76 -12.6 -3.37796 | gap 1, opp_overlap 446649 GGTCATCACCGACAA GTCGGTGGCCACTTCAAGC-GGG TGT CCCTGGTGGACGCGGCCGCCGAC GCCAGCATATTCGCC TERM 379 446988 - 447036 + g 78 -7.3 -4.68655 | gap 1, overlap 446990 TCAAACTTGAACGTG TTGCGGCTGGCGGCCAGTGCCG CCAGCA CGGT-CTGGCCGGCGGGCACGA TTTCTTTTCCGATTC Rfer_0441 447187 - 448128 + | LysR family transcriptional regulator TERM 380 449075 - 449042 - g 76 -6.5 -4.52589 | gap 1, opp_overlap 449057, overlap 449044 GGGCCGCACAGAAAA GCCGGCCGGCGCCTGG ACG CC-GGAGCAGACCGTC GACTTCATGATGGAG Rfer_0442 448413 - 449267 + | short-chain dehydrogenase/reductase SDR Rfer_0443 450074 - 449277 - | hydroxypyruvate isomerase TERM 381 449933 - 449952 + g 76 -12.8 -3.31144 | overlap 449920 CATGGGCCCTGAGGC GGGCCGCG ATTT CGCGGCTC TTATAGGCATAGGGA TERM 382 450029 - 449972 - G 70 -3.5 -4.71061 | gap 2, opp_overlap 449982, overlap 449976 449977 AGGCATAGGGAAAAA GATATTC--GACCGCCTTGAAGCCGTC TTGGGC GGCGGCCGCAAAACGGTCCAGAAAATC GAGCTCGGGGTAGAG Rfer_0444 450754 - 450080 - | putative aldolase Rfer_0445 452022 - 450751 - | type III effector Hrp-dependent outers Rfer_0446 452909 - 452019 - | 3-hydroxyisobutyrate dehydrogenase TERM 383 452222 - 452198 - G 72 -2.7 -4.82901 | opp_overlap 452205, overlap 452200 452201 GGTCCTTGACAAAAA TATCCACCGCC GAC AGCGGCGTGTA GTCGCCGCTGAGCAC Rfer_0447 453826 - 453032 - | GntR-like TERM 384 453142 - 453181 + g 80 -14.9 -3.05384 | gap 1 TGGCGTTGTCCATGT GCC-GCGCCGCGGCCTTG CGCGC CGCGGCCGCGTCGCCGGC TTCAATGGCGCGCAA TERM 385 453842 - 453865 + r 100 -19.6 -3.75629 | opp_overlap 453826 453823 CGTGCAACTCTATCA CCCGGCAGGC GAAC GCCTGCCGGG TTTGGGTTCACGCTA Rfer_0448 455155 - 453878 - | TRAP dicarboxylate transporter- DctM subunit Rfer_0449 455646 - 455152 - | tripartite ATP-independent periplasmic transporter DctQ TERM 386 455709 - 455683 - R 100 -9.5 -5.43866 | gap 1 GAAGTTGTAAAAAAA CACCCGAAA-GC TTGC GCGCTTCGGGTG TCAGCAGCTACAGAA Rfer_0450 456706 - 455735 - | TRAP dicarboxylate transporter, DctP subunit Rfer_0451 457819 - 456764 - | NAD-dependent epimerase/dehydratase TERM 387 457771 - 457757 - G 78 -7 -4.60041 | overlap 457758 ACGCACGCCCAAAAA CCCGGC ACC GCCGGT GATCACGATATGACA Rfer_0452 459287 - 457845 - | aldehyde dehydrogenase Rfer_0453 460243 - 459314 - | dihydrodipicolinate synthetase TERM 388 459468 - 459479 + g 74 -7.2 -4.36411 | overlap 459467 459449 TTGGCGCTCAGGATG CCGC CCTG GCGG TTTTCATAGTTGATC Rfer_0454 461288 - 460260 - | 4-hydroxy-2-ketovalerate aldolase Rfer_0455 462223 - 461303 - | acetaldehyde dehydrogenase TERM 389 461916 - 461903 - G 70 -4.5 -4.52589 | gap 1, overlap 461904 461905 CGGCGGTACACAAAA CGGGCC GAT GGC-CG CCGGTGTCAGGTCGA TERM 390 462160 - 462205 + g 70 -4.8 -4.53225 | gap 2, opp_overlap 462169 462171, overlap 462136 GGCTGCGCCTCAGTT TGTAGAGCAGATCGGTGCCG ATGTTGCC CGG-ACCGATCAGCGC-ACA TTTGATTTTTTTGCT Rfer_0456 463996 - 462257 - | dihydroxy-acid dehydratase Rfer_0457 464120 - 465106 + | LysR family transcriptional regulator Rfer_0458 468317 - 465204 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 391 465321 - 465306 - G 89 -10.4 -4.66833 | opp_overlap 465305 465306 CTGCAAGCGCAAAAA GGCCAG TTGA CTGGCC GTTTCCACCCCCTCG TERM 392 466052 - 466062 + g 78 -2.4 -5.01732 | overlap 466051 TGACGCGATACATGG CGGC GTC GGCG TTTTTTGACAGGGTT Rfer_0459 470265 - 468409 - | ATP-dependent DNA helicase RecQ TERM 393 469280 - 469292 + g 76 -10.5 -3.80573 | GCTTGGCCATCGCGC CCGGC GCG GCCGG TTTCCTGGTAATAGC TERM 394 469595 - 469580 - G 76 -10.4 -3.73224 | opp_overlap 469573 469570 TCACTGGTGATGAAA CGCAGC AACT GCTGCG TGGCATCTCGCTTCT TERM 395 470963 - 470974 + G 70 -4.4 -4.57569 | GCGCCGATGCGCTGC TGGT GGAA ACCA TTTTTGACACCCTCA Rfer_0460 470422 - 471468 + | 5-methyltetrahydrofolate--homocysteine S-methyltransferase TERM 396 471624 - 471634 + G 80 -3.2 -5.0538 | ACGTGGTGACGGTGT GGGA TGG TTCC TTTTTTCGCCTGGAC Rfer_0461 471491 - 472396 + | aminotransferase, class IV TERM 397 472900 - 472880 - g 84 -10.5 -4.2573 | CAAAGAACGCTAAAA GACTTGCTC TAC GAACAAGTC GCACGCATCGGCAAG TERM 398 472994 - 472974 - g 78 -2.4 -5.03314 | overlap 472975 472976 CGCAGGGGGAAAAAA CGGTTGAC GTCAT GGCGACCG AGTTGTCGGCCGACA Rfer_0462 472859 - 473620 + | ArsR family transcriptional regulator Rfer_0463 473622 - 473975 + | DsrE-like protein Rfer_0464 474022 - 474159 + | cysteine desulfurase TERM 399 475179 - 475205 + G 77 -7.8 -4.36914 | GATGTCACTTGCGCT GCTGGGCCTGGG GCT CGCTGGCCTGGC TTTTGTACGCCGCCG Rfer_0465 474592 - 475233 + | hypothetical protein TERM 400 476164 - 476191 + G 71 -7.7 -4.07568 | overlap 476186 476188 GCATTTGCGAGCGCG CCTACCGCATC CTGGTC GATGAGGTGGG TTTTCCGCCGGAAGA TERM 401 476908 - 476891 - g 77 -3.3 -4.91084 | overlap 476892 476904 CATTGAAGAAGAAAA GCGGCTC GATG AAGCGGC CGGTCGCGACGTCGC TERM 402 477940 - 477927 - g 78 -6.7 -4.64766 | overlap 477938 GCTACAGGCCAAAAA GGCTT AAAT AAGCC AGGGAATGCCGAGAC TERM 403 478473 - 478452 - g 85 -6.5 -4.7497 | gap 1 GGCATGGATGAAAAA GCG-CTGCAG CGG CTGCTGGCGC CCAATCTGTGATTCT Rfer_0466 475587 - 478484 + | 5-methyltetrahydrofolate--homocysteine methyltransferase Rfer_0467 479699 - 478488 - | major facilitator transporter TERM 404 478629 - 478606 - G 74 -6.6 -4.30719 | overlap 478608 478610 478618 GCCGTCCACAACAAA CCCAGCAGCA AAGG CGCTGCCGCG CGCGCCAGCGCCAGC TERM 405 478641 - 478618 - G 91 -13.8 -3.80862 | overlap 478610 478608 478606 AAACCCAGCAGCAAA GGCGCTGCCG CGCG CGCCAGCGCC AGCGGCAGGCCCAGC TERM 406 479368 - 479354 - G 70 -4.2 -4.52589 | overlap 479356 CGGGCGCATACAAAA CGGC TGCCATC GCCG CACCCAGCCCGGCCC Rfer_0468 480579 - 479815 - | cobyrinic acid a,c-diamide synthase TERM 407 482022 - 482042 + G 75 -8.2 -4.1891 | CTGGGTGAGCGGGTG CTGCTGGC CGCGC GCCAGCCG TTTCTGTTCGAGCGG TERM 408 482301 - 482316 + G 70 -3.9 -4.59773 | AACCATGAATTCTTT CTGGC GTACCA GCCGG TTTTTGGCCGTGACG TERM 409 482938 - 482950 + G 85 -9.1 -4.66537 | GCCAATTCGGATGCA CCCTG ATT CAGGG TTTTCTATTGGGCCG Rfer_0469 480726 - 483020 + | diguanylate cyclase/phosphodiesterase TERM 410 483302 - 483267 - g 89 -4.6 -5.26875 | gap 1, overlap 483268 483269 TGGTGAACGAAAAAA TTGCCACGGTGCTCGAT GAG ATCG-GCACCAAGGCCC AGTATGTGATCGATA TERM 411 483649 - 483625 - g 70 -4.3 -4.56597 | gap 2, opp_overlap 483610, overlap 483628 GCGTCCGGCCAAAAA GCAGGCGCTGA TTTAT TC-GCGCC-GC ATGCTGCATCCCGAC Rfer_0470 483032 - 485578 + | CheW protein Rfer_0471 487107 - 485575 - | Mg chelatase-related protein TERM 412 485984 - 486001 + g 76 -5.5 -4.58773 | overlap 485995 CGCGCCACCTGGTCG GGTGTGC AGCG GCAGACC TTTTGCTTTGATCCC TERM 413 486554 - 486580 + g 74 -11.4 -3.44051 | opp_overlap 486511, overlap 486553 GTGACCCGCGACCAG CCCGCCGCGGGC TCC GCTGGCGGCGCG TTGTCGTCCTGCGGC Rfer_0472 487365 - 487703 + | nitrogen regulatory protein P-II Rfer_0473 487723 - 489291 + | ammonium transporter TERM 414 489309 - 489337 + T 100 -22.5 -5.78622 | CGGATCACGCTGCAA GCCCACCCGAGTC TGT GGCTCGGGTGGGC TTTTTTTTCGGGTCA Rfer_0474 490618 - 489734 - | LysR family transcriptional regulator Rfer_0475 490720 - 491613 + | putative oxidoreductase protein Rfer_0476 491652 - 492716 + | NADH:flavin oxidoreductase/NADH oxidase Rfer_0477 494610 - 492997 - | response regulator receiver domain-containing protein TERM 415 493398 - 493420 + g 78 -2.7 -5.07107 | gap 1, overlap 493401 493402 TTTTGACCAGGTCCC GGAGCAAGCC GCAT GCCTTG-TCC TTTTTTCCCAGTTTG TERM 416 493567 - 493600 + g 100 -18.1 -3.48924 | overlap 493568 493569 TTGATAGACCAGGCT TTCGGCCGCCGCCGT TTGC AGGGCGGCGGCCGGG TTGTATCGGAAGTCG TERM 417 493568 - 493599 + g 88 -19.4 -2.6914 | overlap 493567 493569 TGATAGACCAGGCTT TCGGCCGCCGCCGT TTGC AGGGCGGCGGCCGG GTTGTATCGGAAGTC Rfer_0478 495326 - 494634 - | histidine kinase TERM 418 494677 - 494659 - G 71 -5.8 -4.35042 | opp_overlap 494658 494669, overlap 494656 494660 CGCACGACAAAACAA CCGCCGCC ATA GGCGCCGC CGTTCTCTATCGTGA Rfer_0479 495521 - 496459 + | senescence marker protein-30 (SMP-30) TERM 419 496755 - 496741 - g 95 -11.4 -4.56597 | GTGCTGGCTGAAAAA GGCCAG TGC CTGGCC TTCGAGCCGCCCCAC TERM 420 497317 - 497283 - g 76 -12.7 -3.28712 | CGCGCGCCTGGACAA CGCGCAAGCCGGCCC CGACT GGGCCGCCTGCCGCG ACCAAACCCTGCCGT glcE 496510 - 497682 + | glycolate oxidase FAD binding subunit TERM 421 498145 - 498123 - g 78 -10.4 -3.90112 | TGCCGGCCAAGCAAA GCGCGGGTGC TTG GCCCACGCGC GGCCACGCGCGCCAG glcF 497660 - 498928 + | glycolate oxidase iron-sulfur subunit TERM 422 499325 - 499313 - g 78 -6.9 -4.59773 | GTGTACTTTGAAAAA CCGCG CAC CACGG TCGGCTGGAAGGGCT TERM 423 499862 - 499843 - g 73 -5 -4.58283 | gap 1, overlap 499847 CAACTCGCGCAAAAA CCATGCGCT GCA AACGC-TGG TGCTCAAAGACGTGG Rfer_0482 499016 - 500074 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 424 500991 - 501042 + G 80 -10.9 -3.78962 | gap 2, overlap 501017 TGACCCCGCCCTCGC CCGCGCTGGC--CCTGATCCGGCTT AACT GAGTTGGCTCAGGCCGCCAGCGCCG TTTCAATATCTTTCG Rfer_0483 500120 - 501019 + | lytic transglycosylase, catalytic Rfer_0484 501511 - 501026 - | glutathione peroxidase Rfer_0485 502176 - 501619 - | hypothetical protein Rfer_0486 503191 - 502253 - | hypothetical protein TERM 425 502679 - 502661 - GR 100 -9.5 -5.09259 | CAGGGCAAAACAAAA GCCGGCC ATCAG GGCCAGC CAGTCGGCCAGACTC TERM 426 502870 - 502850 - GR 75 -11.1 -3.42459 | CAGGTAGAACAGCAA GACGACGCG CAC CACGTCGCC CACCGTCACCGCCCA TERM 427 502970 - 502952 - GR 85 -13.1 -3.61398 | GGGGTGGCGCAAGAA GCCGCGC CAGGC GCGCGGC TGAACCAGCGCCAGA TERM 428 503110 - 503121 + gr 77 -7.2 -4.25104 | opp_overlap 503087, overlap 503106 GCGTCAGTGCCGCCG CGGC CAGC GCCG TTTTGCTCAAGGGCG Rfer_0487 504446 - 503163 - | hypothetical protein TERM 429 504648 - 504619 - g 89 -15.8 -3.28712 | gap 1 TGCCCTGCGCCACAA TCTGGCGCGCGCC CGTCT GGC-CGCGCCAGA TGCAAAAGTCTGGGC Rfer_0488 504569 - 505693 + | alanine racemase TERM 430 506246 - 506265 + G 76 -10 -3.72893 | gap 1, overlap 506247 AACTGGACATGGCGG C-GGCTGCC GGC GGCAGCCTG TTTCGTGCCGCCCTG TERM 431 506247 - 506263 + G 86 -13.7 -3.44848 | overlap 506246 ACTGGACATGGCGGC GGCTGCC GGC GGCAGCC TGTTTCGTGCCGCCC TERM 432 506734 - 506695 - g 77 -4.1 -4.91712 | gap 1, opp_overlap 506727, overlap 506697 TTCAACGGAGAAAAA GCGGTCGTCGTGGCGCGC GGCCT GCGCGCCA-ACCAGCCCC AGGTTGTGAGTATTG Rfer_0489 505693 - 506901 + | HD-GYP domain-containing protein TERM 433 506963 - 506936 - f 75 -11.2 -3.41051 | opp_overlap 506940 506941, overlap 506937 506940 506941 TGAGCGGGATGACAA TCAATCCCGGCG TCAG CGCCGGGCTTGT GCTGGTGAGCCGTAT TERM 434 506962 - 506937 - f 83 -14.7 -2.64416 | opp_overlap 506940 506941, overlap 506936 506940 506941 GAGCGGGATGACAAT CAATCCCGGCG TCAG CGCCGGGCTTG TGCTGGTGAGCCGTA TERM 435 506959 - 506940 - f 74 -10.6 -3.47322 | opp_overlap 506940 506941, overlap 506937 506936 506941 CGGGATGACAATCAA TCCCGGCG TCAG CGCCGGGC TTGTGCTGGTGAGCC TERM 436 506940 - 506959 + F 73 -10.6 -3.44051 | opp_overlap 506940 506937 506936 506941, overlap 506941 CGGGATGACAATCAA TCCCGGCG TCAG CGCCGGGC TTGTGCTGGTGAGCC TERM 437 506958 - 506941 - f 81 -14.1 -2.68072 | opp_overlap 506940 506941, overlap 506940 506937 506936 GGGATGACAATCAAT CCCGGCG TCAG CGCCGGG CTTGTGCTGGTGAGC TERM 438 506941 - 506958 + F 81 -14.1 -2.66216 | opp_overlap 506941 506940 506937 506936, overlap 506940 GGGATGACAATCAAT CCCGGCG TCAG CGCCGGG CTTGTGCTGGTGAGC Rfer_0490 506981 - 507961 + | heat shock protein DnaJ-like Rfer_0491 507958 - 508314 + | hypothetical protein Rfer_0492 510879 - 508306 - | ATPase, E1-E2 type TERM 439 509020 - 509070 + gT 89 -13.2 -3.53012 | opp_overlap 509012 CAGCGAAGCGGCCTC GCGCGCCACGTCGGTGCCGC GCCCACCCATG GCGACGCCGACGTGGGCCGC TTTCAGCGCCGGGGC TERM 440 509508 - 509483 - GT 100 -13.3 -4.07568 | gap 1, opp_overlap 509488 TGCTCGCCCTCAAAA CGCGC-CTGGGC GAC GCCCAGCACGCG CAGTCCCTTGGCCGC TERM 441 510187 - 510201 + gT 76 -2.8 -5.00616 | CGCCAACACCTTGAC CAGACT GGC GGTTTG TTTTTTGAGCGGCGA Rfer_0493 513335 - 510849 - | magnesium-translocating P-type ATPase TERM 442 511104 - 511094 - GRH 78 -6.8 -4.56153 | overlap 511095 511097 GGATGACAAAAATAA CCAG CAC CTGG GTGGCGATGGACTCC TERM 443 511633 - 511662 + grH 85 -2.8 -5.40072 | gap 1, opp_overlap 511625 TAACCCACCACATGG CCGCGGCCT-TTG AGTGC CAGGAGGATGCGG TTTTTTTGCGCCGGG TERM 444 513607 - 513590 - RH 71 -4.7 -4.62069 | opp_overlap 513602, overlap 513601 513602 CGGGGATTGGAAAAA CCGAGGG AAAA CCCGCAG GACGCGGTTCCTCAC Rfer_0495 514590 - 513880 - | HpcH/HpaI aldolase Rfer_0494 513638 - 513970 + | hypothetical protein Rfer_0496 514998 - 515954 + | cation diffusion facilitator family transporter TERM 445 515934 - 515975 + F 77 -11.6 -3.53811 | overlap 515960 CTGGACCACCCGACG CCTGCAGCAG-CGCCACGCT GACG GGCGGGGCGTCTG-TGCGGG TTTGACAAAGATCAA Rfer_0497 516157 - 517329 + | oxidoreductase FAD/NAD(P)-binding Rfer_0498 517335 - 517913 + | hypothetical protein TERM 446 518056 - 518085 + G 80 -14.3 -3.06796 | gap 1 CTGCTTCGCCTGCCA TGCGCC-CTGGCGC GGC GCGTCAGCGGCGCG TTGCGTCAGCTGCCA Rfer_0499 517910 - 518647 + | hypothetical protein TERM 447 518945 - 518920 - g 70 -4 -4.72272 | gap 1 GTCCCCCACCAAAAA CCGT-TTCGCC TCCCT GGCCAAGACGG CAGAAATCGCCATTC TERM 448 519199 - 519165 - g 84 -10.7 -4.16016 | TGACGGGCGAAGAAA GCGGC-GCGCAAGTCGC GCT GCG-CTCGCGCCGCCTC GGGCTGGGCCACTCG Rfer_0500 518783 - 520147 + | DNA repair protein RadA Rfer_0501 520820 - 520194 - | 17 kDa surface antigen TERM 449 520457 - 520478 + g 89 -5.1 -5.28176 | gap 1, opp_overlap 520457 CGCCGCCAGCAATCA GGCCAACGGC ACT GCC-TTCGCC TTTTTTGTCGCTCAC TERM 450 520797 - 520787 - G 70 -3.2 -4.61482 | GGCTCGAAAAAATAA GACC GCA AGTC ATTGTCCACACAGTT TERM 451 520913 - 520879 - H 100 -17.3 -3.19522 | gap 1, opp_overlap 520874, overlap 520872 520884 GGATGCAACATGCAA GCATAGCGCTTGCGTG TGTC CACGCAAGCGCCA-GC GCCTTAAGACTTGCT TERM 452 520909 - 520884 - H 100 -19.1 -2.93878 | opp_overlap 520874, overlap 520872 520879 CAACATGCAAGCATA GCGCTTGCGTG TGTC CACGCAAGCGC CAGCGCCTTAAGACT Rfer_0502 520969 - 521682 + | cytochrome B561 Rfer_0503 521756 - 522439 + | two component transcriptional regulator Rfer_0504 522436 - 523788 + | periplasmic sensor signal transduction histidine kinase TERM 453 523871 - 523836 - f 77 -7.6 -4.24326 | gap 1, overlap 523827 AAAGATGACGCAAAA TGGCGCCTC-CCATTGC AAA GCAAGAACGAGGCACCA TGAGCAAACTGTCGT TERM 454 524325 - 524289 - g 83 -4.4 -5.14563 | overlap 524290 CGCTGTATCAAAAAA TGCACCATGCGTG-CGCC GAC GGCGTCACG-ATGTCGCG CTGGACCTCGGAGAG TERM 455 524858 - 524884 + G 71 -7.3 -4.18197 | gap 1 GCGCCCACCGACGAC CCCTATG-TGCG GCTG CGCAACATCGGG TTTTCGCTGCGCAGT Rfer_0505 523871 - 525274 + | hypothetical protein TERM 456 525999 - 525981 - g 72 -11.7 -3.34398 | opp_overlap 525969 525966 525979, overlap 525979 TTTCGTCGTCAAAGA CGGCGTG GTTTA CACGCCG GATCTGTCGTCCGGC Rfer_0506 525352 - 526302 + | branched-chain amino acid aminotransferase Rfer_0507 526315 - 526518 + | hypothetical protein TERM 457 526520 - 526542 + F 83 -7.7 -4.63107 | opp_overlap 526520 526523 TCGCCGGGCACTAAA GAATCGGGG TCTCT CCCCCATTC TTTTCGTTCTTTGAT TERM 458 527106 - 527080 - g 72 -12.2 -3.01712 | opp_overlap 527078 527080 527092 527093 527095 CCCTGGGGCTGAATA CGGCCCGGCCAA GCG CTGGCCGACCCG TCATTTTGCCGAGTT Rfer_0508 526589 - 527542 + | lipopolysaccharide heptosyltransferase II TERM 459 527607 - 527594 - T 100 -8.1 -6.02914 | opp_overlap 527594 TTTATACAAAAAAAA CCACC CGAA GGTGG TTGTAAAAAAGTCCC TERM 460 527631 - 527618 - T 80 -4.5 -5.00616 | opp_overlap 527623 GGTGGTTGTAAAAAA GTCCC CGAA GGAAC CTCGTTGGATTCTTT TERM 461 527803 - 527787 - T 72 -3.6 -4.82901 | opp_overlap 527788, overlap 527788 TTTTGGGTAGAAAAA TGTCGC TTTTT GCGACT TTTATACTTTGTCGA TERM 462 527788 - 527802 + T 78 -7.1 -4.64846 | opp_overlap 527788 527787 TTTGGGTAGAAAAAT GTCGC TTTTT GCGAC TTTTATACTTTGTCG Rfer_0509 529088 - 527805 - | periplasmic sensor signal transduction histidine kinase TERM 463 528853 - 528885 + g 72 -11.2 -3.28712 | CTGTAGGGGCCGAGC CAGCGATCCTGCGC ATCTG GCGCCCGGTCGCTG TTCTCCCCAAAACCG Rfer_0510 529795 - 529091 - | two component transcriptional regulator Rfer_0511 532311 - 529864 - | glycogen/starch/alpha-glucan phosphorylase TERM 464 530709 - 530734 + g 74 -6.7 -4.29049 | opp_overlap 530678, overlap 530716 TGACGCCCGGGCAGC GCGCCATCAGG TCCG TCAGACGGCGC TTGTTTTGCTGCTTG TERM 465 530887 - 530912 + g 76 -6.1 -4.63218 | GTTGGCCAGCGACAG CCAGCGGCG CGGGGTAA TGCCGTTGG TTTTATTGCAGAAGC TERM 466 531485 - 531514 + g 70 -3.5 -4.59117 | gap 1, overlap 531488 TGCCCGTGCTCGGTG CGATCATCCGGGTA GAG TACCCGCGAGA-CG TTTTCTGATTGGTTT Rfer_0512 533827 - 532343 - | glycogen/starch synthases, ADP-glucose type TERM 467 532509 - 532475 - G 82 -9.1 -4.40333 | opp_overlap 532475, overlap 532477 TCGAAACAAGACAAA GGCCCGCCGCACGGC GCTGA GCAATCCGGCGGGGC TCAATTCGTCGAACA TERM 468 532856 - 532873 + g 91 -8.3 -4.7497 | opp_overlap 532852 GTCCGCCAACACCTG GGGCAGC AGGT GCAGCCC TTTTTGCTCCGTCAA Rfer_0513 535095 - 533824 - | glucose-1-phosphate adenylyltransferase Rfer_0514 536668 - 535130 - | 4-alpha-glucanotransferase TERM 469 535408 - 535379 - G 81 -15.7 -2.88249 | gap 1 CAGAGGGCCGAGATA GGCG-CGGGCGACG TGC CGTTGCCCGGCGCC CGCCGTCTGCCACCA TERM 470 535774 - 535757 - G 73 -9.9 -3.63968 | CTCGAAACCGCGAAA GTGATCC AGCC GGATCAC ATCCACCAGCTCAAG TERM 471 536652 - 536638 - G 75 -2.7 -5.00884 | overlap 536639 AGCGTTGCGAAAAAA TGGCC GCCGT GGCCG CTTGCGCCGGGCTCA Rfer_0515 538884 - 536665 - | glycogen debranching protein GlgX TERM 472 538510 - 538557 + g 86 -13.4 -3.55622 | overlap 538497 538511 GCGCTCCAGCGACAG GTGCTGCGTGGACCCTTTGAGC GCGC GCGCAAAGGGATCAAGCAGCAA TTTGGCCGGGTTGAA TERM 473 538511 - 538556 + g 84 -16.9 -2.73159 | overlap 538497 538510 CGCTCCAGCGACAGG TGCTGCGTGGACCCTTTGAGC GCGC GCGCAAAGGGATCAAGCAGCA ATTTGGCCGGGTTGA TERM 474 538679 - 538640 - G 79 -12.2 -3.53444 | gap 1 TGACCGGCCTTCAAA CCGCGCACAA-AACCGTGC CAG ACACCGTCGCTGTGCGCGG GCAAGCGGATGCGAG Rfer_0516 540248 - 538923 - | major facilitator transporter TERM 475 541021 - 541010 - g 84 -5.8 -5.00616 | overlap 541011 CGTTGTGGCAAAAAA TGGC CGCC GCCA GTCGGGGCGCGCCGC Rfer_0517 540292 - 541137 + | peptidase M48, Ste24p Rfer_0518 541203 - 542825 + | thiamine pyrophosphate enzyme-like TPP binding protein Rfer_0519 544172 - 542970 - | Rh-like protein/ammonium transporter TERM 476 543679 - 543650 - G 70 -12.1 -2.85545 | overlap 543648 543647 543645 CGCCCAACAAGATCA CGGCGGGCAGC GCAACCCA GCCGCCCACCG CGTGCACCACCACGC Rfer_0520 544383 - 544946 + | hypothetical protein TERM 477 545008 - 545021 + T 82 -5.2 -5.01732 | CGCCGGTTTGTGAAG GGCG ATTAAC CGCC TTTTTTGCAGCGCTT Rfer_0521 545180 - 545013 - | hypothetical protein Rfer_0522 545611 - 545258 - | hypothetical protein TERM 478 545511 - 545543 + g 72 -2.5 -4.75174 | overlap 545512 ACGTACTTGCGGATC TCGTGTTTGGTGGCT TCC AGCACCCGGTCACGG TTTTTGCCTTCAATG Rfer_0523 547379 - 545691 - | acyl-CoA dehydrogenase-like TERM 479 546578 - 546588 + g 78 -4.6 -4.7373 | overlap 546570 TCTTCAGCCGCAGCA CCTG CAT CGGG TTTTTGCTGCCGTCC Rfer_0524 548217 - 547372 - | hypothetical protein TERM 480 548155 - 548124 - G 89 -11.4 -4.2349 | CGCTGATATTGAAAA GGGCGCCCGCCAGG ATCG CATCGCGGGCGGCC ATCGGCTTGTCGCCG TERM 481 548264 - 548277 + r 81 -3.9 -5.20216 | CTACATTACTTGATT TGTAA GCAT TTACA TTTTTTCGTAATGTA Rfer_0525 549561 - 548359 - | phospholipase TERM 482 548613 - 548600 - G 70 -5.2 -4.56597 | overlap 548601 548602 TTGGGGGTCCAAAAA GCCG CCACTT CGGC GCGTCCAATTTTGTT TERM 483 549622 - 549634 + H 89 -9.1 -4.57073 | overlap 549595 GCACTTGTATGGCCT GCGCA TCC TGCGC TTTTTGCGCAAACTC TERM 484 549667 - 549647 - H 85 -12.5 -3.53012 | opp_overlap 549648 549649, overlap 549648 CGCTTTTTGCGCAAA CTCCGCGCG CAA CGCGCGCAG CTTGGCCCGCGGGTC TERM 485 549740 - 549757 + H 77 -4 -5.09426 | GCGGCTGGGCAGGGC GGCCAC CATCTC GCGGCC TTTTTTGCGCTTGCG TERM 486 550182 - 550204 + H 74 -4.9 -4.7173 | gap 2, opp_overlap 550177 550182 CAAAAATCGAGCACA TTGGTCCAGCG CGC CGC-GG-CCAA TTTTTCGCTGTCCTC TERM 487 550458 - 550441 - H 73 -5.5 -4.56775 | opp_overlap 550441, overlap 550443 550449 ATTGGCCGGCAAAAA CGCCCAA AGCG CTGAGCG TCTGGTGGCCGATGC TERM 488 550590 - 550580 - H 74 -2.4 -5.00616 | opp_overlap 550583 550589, overlap 550582 GGCGCGGTCAAAAAA GCTG GTG CCGC CCGACACCTTGTACG Rfer_0527 551325 - 552383 + | porin TERM 489 552435 - 552450 + F 100 -8.2 -5.81412 | opp_overlap 552435 CTGACTCAGATAAAA CCGCCT TTCG GGGCGG TTTTTTTTGGCTGAC TERM 490 552450 - 552435 - f 83 -7.5 -4.55287 | opp_overlap 552435 CTGACTCAGATAAAA CCGCC TTTCGG GGCGG TTTTTTTTGGCTGAC Rfer_0528 552646 - 553662 + | porin TERM 491 553704 - 553727 + T 100 -18.2 -5.4833 | opp_overlap 553704 GCTTGAATCCAAAAA CCCCGCTGTG GCAA CACAGCGGGG TTTTTTGTTGAGTGG TERM 492 553727 - 553704 - T 100 -18.2 -4.74103 | opp_overlap 553704 GCTTGAATCCAAAAA CCCCGCTGTG GCAA CACAGCGGGG TTTTTTGTTGAGTGG Rfer_0529 554819 - 553812 - | thiamine-monophosphate kinase TERM 493 554212 - 554242 + g 70 -10.2 -3.53012 | overlap 554213 GCAACGCCGCGCAGT GCCAGGCCCAGCGC CAC GCGCGGGGTCGGGG TTTCGAGGCGCACGC TERM 494 554213 - 554241 + g 73 -13.7 -2.71712 | overlap 554212 CAACGCCGCGCAGTG CCAGGCCCAGCGC CAC GCGCGGGGTCGGG GTTTCGAGGCGCACG Rfer_0530 556876 - 554822 - | putative site-specific recombinase transmembrane protein TERM 495 554908 - 554882 - G 77 -7.8 -4.40561 | TGCCGGCAAAAAGAA GCTCAGCGGCGC ATG GCGCCAGCGCGC GCGAATGGCGGTGCG TERM 496 555398 - 555369 - G 79 -14.9 -2.8789 | opp_overlap 555397, overlap 555361 555386 555388 GCAAACAGCAGCACA CCCGTCAGCGCGG CAAA CAGCGCTGTCGGG CCGAACACGTGGAGC TERM 497 555397 - 555434 + g 79 -15.5 -2.73681 | opp_overlap 555369 555386 555361 555388 555406 CAAACAGCGCTGTCG GGCCGAACACGTGGAGC GTGT GCAGCACGTGCTCGGCC TCCTTCACGTCAATC apaG 557280 - 556888 - | ApaG TERM 498 557834 - 557848 + G 85 -6.4 -4.78572 | GAGCGTCAACCCCGG CTTTGG CGG CCAGAG TTTTATTGATTCAGC TERM 499 558046 - 558090 + G 91 -13.6 -3.9644 | gap 1, overlap 558050 558080 CAGTGGTGGATGCCA TGCGGCTGGCGCTGGGAACAG CCGC CTGATCCTCGCGCCAGCT-CA TTCTTCTGTTGGCGC Rfer_0532 557358 - 558074 + | ribulose-phosphate 3-epimerase TERM 500 558050 - 558087 + T 100 -17.7 -3.03429 | overlap 558046 558080 GGTGGATGCCATGCG GCTGGCGCTGGGAACAG CCGC CTGATCCTCGCGCCAGC TCATTCTTCTGTTGG Rfer_0533 558591 - 558088 - | hypothetical protein TERM 501 558565 - 558548 - G 90 -5.5 -5.1675 | GCAGCCAGCAAAAAA GTGGCGA TGCG TAGCCAC CAGAGGGAAAGCAAT Rfer_0534 558642 - 559085 + | general secretion pathway protein G Rfer_0535 559132 - 559599 + | general secretion pathway protein H TERM 502 559613 - 559637 + G 73 -10.7 -3.63895 | gap 1, opp_overlap 559603 GAACAGCGCTCGCCA GCCGCAGCGC CACGGT GCGC-GCGGC TTTACCCTGGTTGAA Rfer_0536 559596 - 559976 + | general secretion pathway protein I Rfer_0537 559976 - 560656 + | methylation Rfer_0538 560653 - 561630 + | general secretion pathway protein K TERM 503 562145 - 562157 + G 70 -10.5 -3.44848 | overlap 562143 TTACGTGACGGGTGA GGCCG ACG CGGCC TATTTGGTGGGCGCC TERM 504 562323 - 562367 + G 82 -12.9 -3.62096 | gap 1, opp_overlap 562318 CTGCAACAAAGTGCC CTGCGCCAG-TTGCAGGCCG CGCAGT CGGCCTGGGATCTGGCCCAG TTTGACCTGGTGACG Rfer_0539 561627 - 562886 + | hypothetical protein Rfer_0540 562883 - 563380 + | hypothetical protein Rfer_0541 563435 - 564277 + | putative general secretory pathway N transmembrane protein TERM 505 565984 - 565960 - g 75 -8.5 -4.18018 | GGCCGGCACTGAAAA GGATGCCAACG GAC CGACGACATCC AAGCGCACGATCGAG Rfer_0542 564284 - 566392 + | type II and III secretion system protein TERM 506 567605 - 567593 - g 70 -10.5 -3.53012 | opp_overlap 567600 GCGCCTGTGGCCAAA CCGGC TAC GCCGG GCGCTCGGGCGTGTT Rfer_0543 566410 - 567798 + | type II secretion system protein E Rfer_0544 567813 - 569048 + | general secretion pathway protein F Rfer_0545 570768 - 569083 - | AMP-dependent synthetase and ligase Rfer_0546 571606 - 570815 - | hypothetical protein TERM 507 571333 - 571319 - G 70 -10 -3.55622 | opp_overlap 571317 571315 GGCAATGCGCGCAAA TTGCGC ATC GCGCAA GGTGTAATCTTTCTC Rfer_0547 571621 - 572127 + | hypothetical protein Rfer_0548 572159 - 573778 + | glucose-methanol-choline oxidoreductase Rfer_0549 574217 - 573900 - | flagellar hook-basal body complex protein TERM 508 574437 - 574449 + G 85 -9.1 -4.64766 | TCGCTATCAACCCCA CGCTG TCA CAGCG TTTTTCCGGTCTGGA Rfer_0550 574319 - 576085 + | flagellar M-ring protein FliF Rfer_0551 576109 - 577107 + | flagellar motor switch protein FliG TERM 509 577612 - 577622 + G 80 -3.2 -5.05116 | TGCTCGAAGAGGTCG TTCG CAC CGAG TTTTCTTCTTTGTCC Rfer_0552 577110 - 577793 + | flagellar assembly protein FliH TERM 510 579042 - 579016 - g 73 -5 -4.72272 | TCGCGCTATGAAAAA GGCCGCGATCTG GTG CAGATTGGCGCC TACGTCGGCGGCTCC Rfer_0553 577783 - 579198 + | ATPase FliI/YscN Rfer_0554 579195 - 579662 + | flagellar export FliJ TERM 511 580204 - 580231 + G 72 -12 -3.28924 | gap 1 GCAGCAGGCCGGGCG CGCGGACTCGGCT GCG AGC-GAGCCCGCG TTGTCGGGGACGCTG Rfer_0555 579659 - 580843 + | flagellar hook-length control protein TERM 512 581036 - 581026 - g 78 -6.8 -4.67353 | CGAGCCAGGCAAAAA GCCA GTC TGGC GCAAAAAAATGCTGA Rfer_0556 580958 - 581557 + | flagellar basal body-associated protein FliL TERM 513 581764 - 581783 + G 74 -3.4 -4.84529 | TAATGAGCGATTTGC GCGCAACC TGCG GGTGGGGC TTTTTAACTTTATCC Rfer_0557 581579 - 582568 + | flagellar motor switch protein FliM TERM 514 582681 - 582700 + G 72 -2 -4.77036 | opp_overlap 582669, overlap 582669 582669 582668 CCAGGGGGTGTCCTG GCAGGGGA CACG TCCCATTC TTTTTCCTCATCGGA Rfer_0558 582573 - 582992 + | flagellar motor switch FliN Rfer_0559 582992 - 583315 + | hypothetical protein fliP 583326 - 584108 + | flagellar biosynthesis protein FliP Rfer_0561 584130 - 584387 + | flagellar biosynthetic protein FliQ TERM 515 584466 - 584499 + G 73 -4.3 -4.63218 | overlap 584468 GATCTGGCCATTTTT GCGGGTGTTGGCCGT ATTT ACCGCCGCCCCCCTC TTTTCTTCGAAGGCA TERM 516 584728 - 584742 + G 70 -3.4 -4.65895 | GGTTTTCAGATGGGG CTGGGC TTT GCCTCG TTTTTCAATCCAGCC TERM 517 584773 - 584786 + G 85 -3.7 -5.40474 | overlap 584774 CTGAATACCCAGTCC AGCGC CGTC GCGCG TTTTTTTGGACAAAT Rfer_0562 584449 - 585171 + | flagellar biosynthetic protein FliR Rfer_0563 585846 - 585217 - | two component LuxR family transcriptional regulator TERM 518 585356 - 585368 + g 71 -7.7 -4.08394 | ATGTCCGCCAGGCGC TTGCC AGA GGCAA TTTTCAGCAAGGTCT TERM 519 585520 - 585535 + g 77 -11.8 -3.65224 | CGCGCTGATCAGGTC GGCCGG GTCG CCGGCC TTGTTCAGGTAGCCT Rfer_0564 587032 - 585881 - | putative signal transduction histidine kinase TERM 520 586528 - 586548 + g 74 -6.8 -4.42062 | GCCTTTTCTCGGACC TGGCCAAC TCGCT GTCGGCCA TTTCTTTGGCCCGTC TERM 521 586592 - 586621 + g 90 -14.3 -3.54741 | CTCAAGCGCGCGGCG GATGACCTGCGCC AGTC GGCCCAGGTCGTC TTTGGCCAGGTAGTC Rfer_0565 587149 - 587625 + | hypothetical protein TERM 522 587606 - 587617 + F 74 -2.2 -5.00616 | ATGCCATGGACGCTG GTTC CATT GAGC TTTTTTAAACGCCCC Rfer_0566 587668 - 588030 + | response regulator receiver domain-containing protein TERM 523 588261 - 588287 + G 75 -8.6 -4.16943 | opp_overlap 588267 CGTTGCGCCCATTCC GTCAAAGGCGGC GCG GCCACCTTCGGC TTTTCGGATGTGGCC TERM 524 588953 - 588970 + G 81 -4.8 -4.94243 | overlap 588966 TCCACCGGGAGCACC CTTGGC CCCGGC GCCAGG TTTTGGTTTTTTTGA TERM 525 588966 - 588976 + G 88 -3.2 -5.55664 | overlap 588953 CCCTTGGCCCCGGCG CCAG GTT TTGG TTTTTTTGATGGTGC Rfer_0567 588078 - 590267 + | CheA signal transduction histidine kinases Rfer_0568 590292 - 590780 + | CheW protein TERM 526 591633 - 591671 + G 71 -6.6 -4.27512 | overlap 591634 591659 CCCGGGGGCTTGCTG TTTGTGGGGCACGCTGAA AAT TTCAGCGAGTCGCGCGAC TTGTTTGTTCTAAAA TERM 527 591659 - 591674 + G 71 -5.4 -4.30719 | overlap 591634 591633 CGCTGAAAATTTCAG CGAGTC GCGC GACTTG TTTGTTCTAAAAGGC Rfer_0569 590817 - 591713 + | MCP methyltransferase, CheR-type Rfer_0570 591776 - 592480 + | chemoreceptor glutamine deamidase CheD Rfer_0571 592458 - 593579 + | response regulator receiver modulated CheB methylesterase Rfer_0572 595175 - 593580 - | glucose-methanol-choline oxidoreductase TERM 528 595577 - 595609 + G 71 -5.5 -4.36914 | gap 1, overlap 595579 GGACTCTGGCACGCT CACGCCGCTGCTCA AACGCA TG-GAAGCGGCGGG TTTTCTGCGGCGAAC TERM 529 595785 - 595769 - g 83 -2.1 -5.28176 | overlap 595770 GGCATTGACAAAAAA GGTTCAG GCC CTGCGCC GCCAGCTGACGGCCT Rfer_0573 595347 - 595802 + | MarR family transcriptional regulator TERM 530 596112 - 596100 - g 85 -9.1 -4.65895 | overlap 596102 GCCGGTACTCAAAAA CTGGC CAT GCCAG CCAATGCTTCGATTG Rfer_0574 595878 - 596306 + | OsmC-like protein TERM 531 596785 - 596838 + G 71 -5.8 -4.36914 | gap 1 GATGGCGCTGCGCAT CGCGCCG-CGCTGCACCCGGTGTAC AACCA GTACTCGCGCTGCAGCGTCGACCCG TTTTATACCGGCGAC TERM 532 597262 - 597303 + G 93 -7.8 -5.00616 | opp_overlap 597262, overlap 597265 ACGCATGTTGAACAA CTGGGTGGCGCCAAGGAC TTGCCC GGCCCTCGCGCCACCTTG TTTTTTGCCCCGGCG TERM 533 597265 - 597300 + G 89 -10.3 -4.61482 | opp_overlap 597262, overlap 597262 CATGTTGAACAACTG GGTGGCGCCAAGGAC TTGCCC GGCCCTCGCGCCACC TTGTTTTTTGCCCCG TERM 534 597379 - 597389 + G 74 -6.8 -4.37092 | overlap 597373 CGACGTCTGCTGCAA GCCT GGC AGGC TTTTGTCGCCAAAGT Rfer_0575 596416 - 597543 + | hypothetical protein TERM 535 598332 - 598348 + GT 74 -3.5 -4.75472 | opp_overlap 598330 598331, overlap 598333 598334 GATTTGCCGACAAGC GCCGGGC CGG GCCCGCA TTTTGTTGATCTGGA Rfer_0577 600012 - 598582 - | multi-sensor signal transduction histidine kinase Rfer_0576 597627 - 598682 + | serine/threonine protein kinase TERM 536 599854 - 599842 - GT 76 -10.5 -3.65522 | overlap 599843 CAGCCAGCGCAACAA GCGCG CGC CGCGC GAGGTATCCAGCAAA Rfer_0578 600780 - 600058 - | two component transcriptional regulator Rfer_0579 601478 - 600777 - | phosphate uptake regulator, PhoU TERM 537 601406 - 601371 - G 88 -13.4 -3.63627 | gap 1, opp_overlap 601370 601369 CTGGGACAGGGCAAA GATGGCCTGGTGGA-TC TGG GACTCCACCAGCCCACC CATTTCCATGACACG Rfer_0580 602267 - 601488 - | phosphate ABC transporter permease pstA 603164 - 602280 - | phosphate transporter permease subunit Rfer_0582 604192 - 603161 - | phosphate ABC transporter permease TERM 538 603280 - 603242 - G 72 -2.2 -4.79667 | overlap 603231 603244 603265 AAAAGTGATGAAAAA CAGCACCAGACCCAGGTA CAT CAGCGACGCCTGGTGCAG GCCTTCACCCGCTTC TERM 539 603667 - 603647 - G 85 -3.1 -5.40072 | CGGTCCGGAAAAAAA GGCGCCCAT ATA AGGTACGCC CGAAAACATGGCTTG TERM 540 604077 - 604044 - G 74 -7.3 -4.29326 | overlap 604045 604072 604073 CCTAAAGTGAATAAA GCCGCCGCTTTGGCC AGCC AGCCAAAGATGCGGT CCGCCATGGGGCCCG TERM 541 604086 - 604101 + g 74 -6 -4.56597 | opp_overlap 604073, overlap 604087 ATGCGGTCCGCCATG GGGCCC GAGC GGGCCA TTTTTGGCGCAGGAG Rfer_0583 605278 - 604235 - | periplasmic phosphate binding protein Rfer_0584 606567 - 605575 - | AraC family transcriptional regulator TERM 542 607872 - 607845 - g 74 -12.8 -3.17212 | gap 1, opp_overlap 607830 607862, overlap 607847 CGACGAGTTGATCAA GATTGGCGGCCAG ACC CTGACCGCCAA-C ATCGTCACCATGTCG TERM 543 607871 - 607847 - g 85 -16.5 -3.1478 | opp_overlap 607830 607862, overlap 607845 ACGAGTTGATCAAGA TTGGCGGCCAG ACC CTGACCGCCAA CATCGTCACCATGTC Rfer_0585 606772 - 608175 + | amino acid permease-associated protein TERM 544 608276 - 608325 + G 77 -14.8 -2.78463 | AAGGCCACGCCGGAA CGCTCCGGCGACCTGCTGGCGG GTGTGG CCGCCCACAGTGCGCAGGAGCG TGTCGTGGCGCAAAT Rfer_0586 608186 - 609583 + | ethanolamine ammonia lyase large subunit Rfer_0587 609590 - 610453 + | ethanolamine ammonia-lyase small subunit TERM 545 610463 - 610432 - f 70 -9.3 -3.63627 | CGCGCACACGCCAAA CGAGGCGGCCCCA CCGTCT TGAGGCGGCCGCG GCTCAGCGCCAAGAG TERM 546 611329 - 611346 + G 71 -9.1 -3.72695 | CCGCGTTATTTCGTG CCGGGTG ACCG CACCTGG TTTCGTAACCCCGAT Rfer_0588 610522 - 611733 + | putative lipoprotein TERM 547 612243 - 612293 + G 82 -9.4 -4.40561 | overlap 612241 612246 612247 CTGTGGCTGGGCCGC CGCCCGCGCTGGCCCCAGGCCCTG CTG CTGGGCCTGATGCTGGCGTCGCTG TTCTTTTTCAACCGG TERM 548 612246 - 612291 + G 71 -9.5 -3.80746 | gap 1, overlap 612243 612241 612247 TGGCTGGGCCGCCGC CCG-CGCTGGCCCCAGGCCCTG CTG CTGGGCCTGATGCTGGCGTCGC TGTTCTTTTTCAACC TERM 549 612247 - 612290 + G 70 -13 -2.87725 | gap 1, overlap 612246 612243 612241 GGCTGGGCCGCCGCC CG-CGCTGGCCCCAGGCCCTG CTG CTGGGCCTGATGCTGGCGTCG CTGTTCTTTTTCAAC TERM 550 612662 - 612683 + G 78 -5.1 -4.7373 | gap 1, overlap 612663 GCAGTTGGGGCTGGG C-GCCAGCTG GCT CACCTGGCTG TTTTTGCTGGGCTGC TERM 551 612663 - 612681 + G 73 -8.8 -3.98658 | overlap 612662 CAGTTGGGGCTGGGC GCCAGCTG GCT CACCTGGC TGTTTTTGCTGGGCT Rfer_0589 611730 - 612821 + | acyltransferase 3 Rfer_0590 615512 - 612882 - | alanyl-tRNA synthetase TERM 552 614046 - 614019 - G 93 -11.2 -4.36914 | GCTCTCGCCATAAAA CGGCGTGGCGGC CAGC ACCACCACCCCG GCCTGACCTGCTTTC TERM 553 614187 - 614207 + g 95 -4.5 -5.63236 | GTCCATGCGGAACTT GCCGGCGGC GCG GCCTTGGGC TTTTTGTTTTTCCAT TERM 554 614559 - 614517 - G 100 -15.4 -4.83615 | opp_overlap 614517, overlap 614519 CAGCTTGTAGAAAAA CGGCGCCTTCTGGCCCAGCT TGT AGCCGTGCCGGATGGCGCGG CGGATGATGCGGCGC TERM 555 614557 - 614519 - G 84 -16.6 -2.6933 | opp_overlap 614517, overlap 614517 GCTTGTAGAAAAACG GCGCCTTCTGGCCCAGCT TGT AGCCGTGCCGGATGGCGC GGCGGATGATGCGGC Rfer_0591 617008 - 615614 - | GntR family transcriptional regulator TERM 556 616285 - 616274 - G 84 -5.8 -5.00616 | opp_overlap 616273 616274 GGGCTGGGTAAAAAA CAGC TTGG GCTG GTGTTTGATGACCAG TERM 557 617912 - 617894 - g 71 -9.5 -3.727 | opp_overlap 617894 617896 CCGACGAGATTCAAA CCGGCGC TGGCC GCACCGG CACCTGGTTTGCCGT TERM 558 618191 - 618179 - g 91 -5.5 -5.42259 | overlap 618181 CCAGCCTGAAAAAAA TGGCC GCC AGCCA CCGCTGCATCGCCGA TERM 559 618392 - 618422 + G 76 -14 -3.05463 | CGGCCAGTGATGCCA TCGTCGATGAAGGC CTG GCCATCATCGACGC TTGCCTGACCGCCAT Rfer_0592 617152 - 618450 + | 4-aminobutyrate aminotransferase Rfer_0593 618556 - 619638 + | spermidine/putrescine ABC transporter ATP-binding subunit TERM 560 620690 - 620704 + G 70 -10 -3.55444 | GCTGACCAGGGTGAG GCGCTT GAG AAGCGC TTTGCCGCCTGGGCC Rfer_0594 619697 - 620728 + | extracellular solute-binding protein Rfer_0595 620750 - 621991 + | binding-protein-dependent transport systems inner membrane component Rfer_0596 622066 - 622911 + | binding-protein-dependent transport systems inner membrane component TERM 561 623054 - 623074 + G 89 -12.5 -4.07568 | GCTGGACATCGGCAC CTCGCACCG GCC CGGTGCGCG TTTTGGCCCGCGCCA TERM 562 623135 - 623147 + G 70 -10.5 -3.54424 | opp_overlap 623129 623126, overlap 623129 CTACAACATGGCGAC CGGCG CGG CGCCG TTTGACACGCTGCAA Rfer_0597 622914 - 623861 + | agmatinase, putative TERM 563 624599 - 624615 + G 88 -6.5 -5.00616 | opp_overlap 624597, overlap 624601 TGACGCCGACAACTC CATTGCC GTG GGCAAGG TTTTTTGCGCCAGCG TERM 564 625040 - 625052 + G 70 -3.3 -4.58395 | overlap 625032 CACTGGCGGCCACCG CTTGC CGG GCCAG TTTTTCGAGCCTACG Rfer_0598 623934 - 625412 + | succinic semialdehyde dehydrogenase Rfer_0599 626156 - 625491 - | cytochrome B561 TERM 565 625692 - 625668 - G 100 -10 -5.41143 | GAGGTGGTAAAAAAA GATGGCGCTG AGGTG CAGCACCACC AAACCGATGAGAACC Rfer_0600 626354 - 626806 + | cytochrome c, class II TERM 566 626903 - 626890 - f 75 -5.9 -4.63218 | CGGGGCGCAAGAAAA CCCCG GGCG CAGGG CTGACAGAAATACAG Rfer_0601 627074 - 627520 + | PTS system fructose subfamily IIA component TERM 567 627546 - 627522 - gf 77 -7.8 -4.27441 | gap 1 ACCATCAGCAATAAA CTG-GGCCTGC ATGC GCGGGCCTCAG CCAAACTCACCAAGC Rfer_0602 627489 - 627758 + | HPrNtr TERM 568 627989 - 627968 - g 73 -8.7 -3.90922 | gap 1 ATGGGCCCGAAAGAA GCGCCG-CAG GAA CTGACAGCGC TGCTCGATGTTCATC Rfer_0603 627755 - 629530 + | phosphoenolpyruvate-protein phosphotransferase Rfer_0604 630258 - 629533 - | LrgB-like protein Rfer_0605 630598 - 630242 - | LrgA TERM 569 630445 - 630431 - G 74 -3.5 -4.8048 | gap 1, overlap 630433 GTGCGACAGCAAAAA GCTGGC ACAG GCC-GC CACCGGTTCTCGTAC Rfer_0606 632089 - 630611 - | FAD linked oxidase-like TERM 570 630712 - 630761 + g 89 -10.9 -4.2558 | opp_overlap 630720 630735, overlap 630713 TGACCTTGCCCGGGT TGAGCAGACCTTTGGCGTCAA AAGCGCGC TTGACGCCAAACATCTGTTCG TTTTCCTCCGCACTG TERM 571 630713 - 630760 + g 74 -12.2 -3.15027 | opp_overlap 630720 630735, overlap 630712 GACCTTGCCCGGGTT GAGCAGACCTTTGGCGTCAA AAGCGCGC TTGACGCCAAACATCTGTTC GTTTTCCTCCGCACT TERM 572 632889 - 632911 + G 70 -10.5 -3.53012 | CGGTCAACCCGACCA CGGCCCTGG GTGTG CCGGGGCTG TTTGCCCGCAACGAG Rfer_0607 632339 - 633238 + | phosphatidylserine decarboxylase TERM 573 634042 - 634013 - g 74 -5.6 -4.56597 | gap 1, overlap 634015 634029 GCTTTTCTGCAAAAA CGCCAGGCGC-AC TACAC GCAGCGCCCGTCG GGCACAGGCGCCTGA Rfer_0608 633266 - 634057 + | enoyl-CoA hydratase/isomerase Rfer_0609 634939 - 634091 - | formyltetrahydrofolate deformylase TERM 574 634161 - 634173 + g 71 -9.1 -3.70902 | CACTTGACGGCCCGC GCCAG CAC CTGGC TTTCGGTGTCACGGC TERM 575 634956 - 634968 + r 76 -3.3 -5.03314 | CGGCCGATTGTCGCA GGGCT CAG GGCTC TTTTTTCGACCTGGA Rfer_0610 635904 - 634960 - | hypothetical protein Rfer_0611 636178 - 635867 - | hypothetical protein Rfer_0612 637316 - 636243 - | hypothetical protein TERM 576 637048 - 636995 - G 74 -11.5 -3.53012 | gap 1, opp_overlap 637019 GCGCCTGGCGTGAAA CCGCCTCCAGGGGGGGTGGCATCGGC GTG GCTGCTGGCGCCCGGCCTG-AGGCGG GCGGTGGCGCTGACC Rfer_0613 637332 - 638336 + | fumarylacetoacetate (FAA) hydrolase Rfer_0614 638963 - 638361 - | multiple antibiotic resistance (MarC)-related proteins TERM 577 638814 - 638781 - G 78 -7.4 -4.60487 | CATCACCCGCAAAAA GCCGCCGCCGAC AAACATGAAA GTCAGCAGCAGC ACAAATGCAATCAAC Rfer_0615 639353 - 638979 - | TraR/DksA family transcriptional regulator TERM 578 639474 - 639453 - H 73 -5 -4.62471 | overlap 639454 CTGAAGGCTGAAAAA GCGGGCAC TACAAT GCGCCCGA TGTCAACTTTGCAAC Rfer_0616 639465 - 639842 + | hypothetical protein TERM 579 639939 - 639960 + F 73 -5.7 -4.42765 | overlap 639940 GGCCTGCCCGTCGTC CGACAGCCG CTTC CGGCTGCCC TTTGATTTTTTAACA Rfer_0617 639995 - 640510 + | hypothetical protein Rfer_0618 641074 - 641613 + | hypothetical protein TERM 580 643938 - 643899 - g 74 -12.8 -3.25729 | opp_overlap 643931, overlap 643892 GACAACCATGAGCAA CCCGGCGCTGCCCAATTA CCCG CAATGGGGTAGCGCCGTG CCGGGTATCGGACGC Rfer_0619 641683 - 643986 + | TonB-dependent receptor Rfer_0620 644055 - 645221 + | citrate utilization protein B TERM 581 645224 - 645209 - f 70 -6.8 -4.08216 | CCATGCGGTCGAAAA GCGCCA GACC TAGCGC GCGGCGCATCGCCAT TERM 582 645752 - 645724 - g 77 -10.9 -3.5771 | opp_overlap 645724 645719, overlap 645733 AAAAAGGTGCGCAAA GCGGCCAAACCCG TGA CCGATATGGCCGC TGGCTTGATTGATCC Rfer_0621 645295 - 645999 + | hypothetical protein TERM 583 647113 - 647136 + G 73 -10.2 -3.69333 | gap 1, overlap 647114 AAGCGGCGCCGCATC CGGCGCGCGGC ATT GCCG-GCGCCA TTTACGTGAGTTGTG TERM 584 647114 - 647135 + G 73 -13.7 -2.81118 | gap 1, overlap 647113 AGCGGCGCCGCATCC GGCGCGCGGC ATT GCCG-GCGCC ATTTACGTGAGTTGT TERM 585 647225 - 647237 + G 85 -6.2 -5.03314 | TGCCTTGGGCGATGT GCCG CTGGT CGGC TTTTTTGCCGGTGGC Rfer_0622 646032 - 647315 + | hypothetical protein Rfer_0623 647471 - 647755 + | prevent-host-death protein Rfer_0624 647757 - 648182 + | PilT protein-like Rfer_0625 648801 - 648304 - | hypothetical protein TERM 586 648332 - 648348 + g 70 -10.1 -3.53012 | opp_overlap 648322 648323 ATAAAGCGCCGCCAG CGCCGCT TCC AGCGGTG TTTCAGAACCCGCCC Rfer_0626 650023 - 648806 - | queuine tRNA-ribosyltransferase Rfer_0627 651320 - 650058 - | metal dependent phosphohydrolase TERM 587 650327 - 650357 + g 85 -7.4 -4.77036 | opp_overlap 650299, overlap 650332 GTATGTCCTCGCCGC TGAGCTGGCGCGGG TAG CCCGAGCCATTCCA TTTTTCGTGGTGCGC TERM 588 650332 - 650352 + g 79 -12.5 -3.47218 | opp_overlap 650299, overlap 650327 TCCTCGCCGCTGAGC TGGCGCGGG TAG CCCGAGCCA TTCCATTTTTCGTGG Rfer_0628 652435 - 651353 - | S-adenosylmethionine Rfer_0629 652621 - 653016 + | hypothetical protein Rfer_0630 653566 - 654984 + | flagellin-like TERM 589 655011 - 655032 + F 100 -14.5 -5.27923 | GTTTCTTCACTTGAA GGGTGCCAA TCTT TTGGCACCC TTTTTTATGAGATTA Rfer_0631 655212 - 656627 + | flagellin-like TERM 590 656646 - 656669 + F 83 -7.4 -4.56597 | opp_overlap 656646 CAGGTAGCGAAACAT TGCCAAGCAC TTGA GGGTTTGGCA TTTTTCGAGGCGGCG TERM 591 656679 - 656706 + F 100 -19.2 -4.70879 | TTGGCATTTTTCGAG GCGGCGATGGAC CTAA GTCCGTCGCCGC TTTTTGGCATTTGAA TERM 592 658017 - 658030 + G 71 -6.7 -4.28432 | opp_overlap 658017 658016 AATGACAACAAAGAC CCGTT GACC AACGG TTTTGCCTTGAAATT Rfer_0632 656799 - 658286 + | flagellar hook-associated 2-like Rfer_0633 658333 - 658794 + | flagellar protein FliS Rfer_0634 658808 - 659107 + | flagellar protein FliT TERM 593 659149 - 659159 + T 71 -8.2 -3.91674 | overlap 659147 TGCAGTGTTGACGGG GGCC AGA GGCC TATTTTGTGTCTAAG Rfer_0635 660129 - 659452 - | hypothetical protein TERM 594 659806 - 659825 + g 84 -9.3 -4.56597 | CTGTTGACTGCCCAA GGCCTGT CCGGCT ACAGGCC TTTTTGGCGCAGCAA Rfer_0636 660690 - 660175 - | putative transmembrane protein Rfer_0637 660966 - 661388 + | signal-transduction protein Rfer_0638 662707 - 661406 - | hypothetical protein TERM 595 661576 - 661590 + g 76 -5.6 -4.66953 | overlap 661566 ACTGGCTGGCCAAGC CCGGTT TGA GGCCGG TTTTTCGGATCTTGC TERM 596 662505 - 662528 + g 85 -7.4 -4.72497 | gap 1, overlap 662494 662508 ACCATGCCTTTGGGG GCATCGTTGCC AAT GGCATCGA-GC TTTTGTTGGTCGATG Rfer_0639 663434 - 662688 - | hypothetical protein Rfer_0640 664111 - 663563 - | hypothetical protein TERM 597 663803 - 663770 - G 70 -3.2 -4.59773 | gap 1, overlap 663750 663773 GGCGACGGTCAAAAA CCA-GTCACCCAC GGGCTCTTT GCGGATGACCTGG ATCAAGTCGTGCGCC Rfer_0641 664416 - 664108 - | heat shock protein DnaJ-like Rfer_0642 666337 - 664448 - | ABC transporter related TERM 598 665296 - 665331 + g 82 -9.7 -4.36914 | gap 1, opp_overlap 665284 665294 TCAGCTTGAGCAAGG TCGTCTTGCCCGCGCC ATTGG GGC-CGAGCAAGCCGA TTTTGTCGCCGCGCA TERM 599 665911 - 665921 + g 74 -6.8 -4.42238 | CGCCCGAGAGTGTGC CGAC GAT GTCG TTTTCGTTCAGATGC TERM 600 666118 - 666143 + g 79 -9 -4.26076 | GATCGAGCTGCGGCT CCTGCGCC ACATACGCCA GGCGCAGG TTTTGCTGCAACTGC Rfer_0643 666829 - 666374 - | hypothetical protein TERM 601 666451 - 666440 - G 85 -3.6 -5.40072 | overlap 666443 GGTCTCGCAAAAAAA GCAC AGCA GCGC CGCCAGGAAAAAAAG TERM 602 666931 - 666908 - R 78 -13.2 -2.56743 | gap 1, opp_overlap 666926, overlap 666907 AAACCGCATATTAAC CGCGCGC-ATC GAG GATGGCGCGCG CCACTTCGGCGAAAC Rfer_0644 667754 - 666903 - | HAD family hydrolase prfC 669412 - 667781 - | peptide chain release factor 3 TERM 603 668969 - 668991 + g 74 -11.3 -3.44284 | overlap 668968 GTCCAGAATGTCCAG TGGATCGCG CACCT CGCGGTCCA TCTTGTTGATGAAGG TERM 604 669487 - 669521 + r 77 -8.5 -4.07568 | gap 1, overlap 669489 669491 GGTCTGTCATGCGGC GC-GGCGCATGCGGGC GAGT GCCCGGATGCGTCTGA TTTTACCGGAGGCGG TERM 605 669489 - 669518 + r 93 -15.7 -3.08032 | overlap 669487 669491 TCTGTCATGCGGCGC GGCGCATGCGGGC GAGT GCCCGGATGCGTC TGATTTTACCGGAGG TERM 606 669491 - 669516 + r 91 -14.7 -3.09823 | overlap 669489 669487 TGTCATGCGGCGCGG CGCATGCGGGC GAGT GCCCGGATGCG TCTGATTTTACCGGA Rfer_0646 670313 - 669543 - | short-chain dehydrogenase/reductase SDR TERM 607 670272 - 670295 + g 71 -5.8 -4.38203 | opp_overlap 670242, overlap 670274 ACGGCCGATCCCGCT GGCGCCGCCG GTCA CGATGGCGAC TTTGTTCCTTATGTC TERM 608 670383 - 670396 + r 73 -5.9 -4.43477 | opp_overlap 670383 CACGCAGGCGACACA CGGGC CCTT GCCTG TTTTGGTTGGGTGAG Rfer_0647 671784 - 670651 - | hypothetical protein Rfer_0648 672166 - 673038 + | hypothetical protein Rfer_0649 674092 - 673175 - | hypothetical protein Rfer_0650 674992 - 674234 - | putative hydratase Rfer_0651 675805 - 675239 - | hypothetical protein TERM 609 675795 - 675821 + g 93 -16.6 -3.32022 | GGTCGCTTTTCAAGT CTTCGGCGCATG CCA CGTGCGCCGGAG TTGATCTGTCACAAC TERM 610 676087 - 676120 + H 75 -6.1 -4.66833 | opp_overlap 676087, overlap 676091 GGCTGCGACAGTCAA CGGCGCTCACC-CAC TGGTCT GTGCGGTGAGC-CTG TTTTTGGGGTTCGCG Rfer_0652 676175 - 677635 + | S-adenosyl-L-homocysteine hydrolase TERM 611 678427 - 678460 + G 84 -3.9 -5.24129 | gap 1, overlap 678432 GACGGCGTGGTTTGA TTCGCCGATTGCCG GTGGCGA CGGCAACCG-TGAA TTTTTTATCGCCGCA Rfer_0653 677672 - 678493 + | ribosomal RNA methyltransferase RrmJ/FtsJ Rfer_0654 678504 - 679355 + | 5,10-methylenetetrahydrofolate reductase TERM 612 679693 - 679673 - T 100 -5.3 -5.80951 | overlap 679674 ATCCAAAATAAAAAA CCACCCTTG ATG CATGGGCGA CGTGCAGTCCGATTC Rfer_0655 680014 - 679652 - | hypothetical protein TERM 613 680191 - 680202 + G 74 -7.2 -4.30014 | opp_overlap 680175, overlap 680183 680198 CCTCAAGCGCTTGAG CCCG CACG CGGG TTTTCGCTTCGTCAA TERM 614 680236 - 680252 + G 70 -3.5 -4.59773 | GGACGTGGCTGATCG GCAGGGC ATG GCGCAGC TTTTTGCCGATGAAA Rfer_0656 680042 - 681049 + | NAD-dependent epimerase/dehydratase Rfer_0657 681650 - 681084 - | protein tyrosine phosphatase TERM 615 681843 - 681857 + H 77 -7.8 -4.26019 | GCATTACTAAAGTTG CGATCC GTT GGGTCG TTTTGGGTCTGATTA Rfer_0658 681878 - 682444 + | polysaccharide export protein Rfer_0659 682528 - 684102 + | lipopolysaccharide biosynthesis Rfer_0660 684110 - 685081 + | protein-tyrosine kinase TERM 616 685921 - 685899 - g 74 -6.2 -4.48987 | overlap 685900 685902 TCTTGACAAGCAAAA TTACGACACC AGC GGTGTCGGAG TGAACTGGGCGCCAT TERM 617 685918 - 685902 - g 74 -12.3 -3.20455 | overlap 685900 685899 TGACAAGCAAAATTA CGACACC AGC GGTGTCG GAGTGAACTGGGCGC TERM 618 686251 - 686265 + G 77 -7.8 -4.34263 | GTGTCCTTGCAACGG CGGCAG GAC CTGTCG TTTGTATTGTTAGGG Rfer_0661 685081 - 686637 + | hypothetical protein Rfer_0662 686641 - 687747 + | ATPase Rfer_0663 687744 - 688940 + | UDP-N-acetylglucosamine 2-epimerase TERM 619 689318 - 689328 + G 72 -2.4 -4.7629 | GAAGTGAATGGGTAT CGCG CGC CGAG TTTTTCCATTGGTAG Rfer_0664 688937 - 689812 + | polysaccharide deacetylase TERM 620 689891 - 689905 + G 88 -2.1 -5.52384 | gap 1, overlap 689892 CGCGTTTGTCATGGC GT-GCC CGGA GGCGAC TTTTTTTCATCGCGC Rfer_0665 689820 - 690857 + | hypothetical protein Rfer_0666 690984 - 692570 + | hypothetical protein TERM 621 693879 - 693848 - g 73 -10.2 -3.61178 | gap 1, opp_overlap 693841 693876, overlap 693849 TTTATTGACGTCAAA GCCGCTTTCGACAGC GGC GCTATCGAAGGCG-C AGGTTACAAACTCTG Rfer_0667 692624 - 693904 + | UDP-glucose/GDP-mannose dehydrogenase Rfer_0668 693905 - 695083 + | glycosyl transferase, group 1 TERM 622 695709 - 695694 - g 72 -2.4 -4.77896 | CAAGCAATCCAAAAA GCTGCC GCCC GGCCAC ACCCTGGCCATCAAG Rfer_0669 695089 - 697014 + | asparagine synthase, glutamine-hydrolyzing Rfer_0670 697011 - 698228 + | glycosyl transferase, group 1 Rfer_0671 698304 - 700163 + | asparagine synthase, glutamine-hydrolyzing Rfer_0672 700160 - 701374 + | glycosyl transferase, group 1 Rfer_0673 701371 - 702687 + | GDP-mannose 6-dehydrogenase TERM 623 702902 - 702917 + G 93 -6 -5.46657 | CTACGTGCAAGAGCG CGGGCC TGTT GACCCG TTTTTTGTTGACGTG TERM 624 703672 - 703703 + G 72 -2.2 -4.77173 | gap 1, overlap 703673 CCTTATTTTGTTCGA TTGC-GGCGGTGC GAGTCCG GCGTCGCCAGCAC TTTGTTTTGTCCAGG Rfer_0674 702678 - 703745 + | hypothetical protein TERM 625 704119 - 704133 + G 75 -2.8 -5.00616 | GTCAATTACCGGGGT GGGA ATGCGGA TCCC TTTTTTGCAAAGGCC Rfer_0675 703735 - 704865 + | glycosyl transferase, group 1 TERM 626 705282 - 705303 + G 72 -11.5 -3.36273 | opp_overlap 705280 GTTGCTGCCAAATGG CGCGCCACC CGCT GGTGGGGCG TTGATATTGGCGACC Rfer_0676 704862 - 706241 + | putative CapK protein TERM 627 706711 - 706721 + G 73 -4.6 -4.63218 | GAACGGGTATGGGGG CCGC CGG GTGG TTTTATTGAAGGGAA Rfer_0677 706234 - 707544 + | O-antigen polymerase TERM 628 707748 - 707770 + G 72 -11.2 -3.29511 | GCGGTCATGCAGCTT CGCGCCGGTA CGC TGCCCGCGCG TTCTGCCGCCATCAC Rfer_0678 707541 - 708509 + | polysaccharide deacetylase TERM 629 709137 - 709126 - g 81 -4.4 -4.87892 | opp_overlap 709128 709131, overlap 709127 CCTGAAGAAAACAAA TGCA CGCT TGCA GCAGGCTGTTCTCAC Rfer_0679 708539 - 710053 + | hypothetical protein TERM 630 710370 - 710352 - g 89 -4.5 -5.23316 | overlap 710354 TACCAGACGAAAAAA TCCTCGG GATCG CCGAGCA GATATTGGTGGGCAC Rfer_0680 710135 - 712351 + | heparinase II/III-like TERM 631 712980 - 713004 + G 71 -6.9 -4.24294 | overlap 712981 712983 713000 ACACACTTGCCATAT TGCCCCCCGCC GAT GGCGGGGCTCC TTTTGGATCATTAAT TERM 632 713600 - 713618 + G 76 -12.4 -3.36273 | opp_overlap 713563 GTATGGACCGTGACA CGCCGACC ACT GGTCGGTG TTGCTGTTCCGACCG Rfer_0681 712412 - 713737 + | twin-arginine translocation pathway signal TERM 633 714819 - 714836 + G 82 -12.7 -3.61764 | AATCGGCTGTCACGC CGTCCGG CGCG CCGGACG TTTCCAACTTGCTCG Rfer_0682 713903 - 717274 + | putative Ig Rfer_0683 719149 - 717401 - | asparagine synthase TERM 634 717559 - 717531 - G 82 -8.7 -4.37092 | overlap 717532 AGGGTCTGGACAAAA TCGGCGCGCACCA CGC CGCGGCGCGCCAA GCTGTGCAGCGAGTC TERM 635 718689 - 718673 - G 70 -10.1 -3.53012 | CTGGCCGTTTTCAAA CAGCGCA TAG TGCGCCG GCGGTAACCTGTAAA TERM 636 718879 - 718868 - G 71 -7.2 -4.2349 | GGTGCAGATGGAAAA GCGG TCCA CCGC CAGAAAGGTGCCGCC TERM 637 719096 - 719116 + g 74 -7.5 -4.3277 | overlap 719099 GTGACAGTTGATCGT GGTCAGCGA GAT TCGCTGTTC TTTGTGTTGTCTATC TERM 638 719099 - 719113 + g 84 -10 -4.25957 | overlap 719096 ACAGTTGATCGTGGT CAGCGA GAT TCGCTG TTCTTTGTGTTGTCT TERM 639 719829 - 719854 + G 80 -14.7 -3.01924 | opp_overlap 719823 GGCGATAGAGGCTGA CGCAGCAGCGC TGGC GCGCTACTGCG TGTTCACCACGCCTG Rfer_0684 719272 - 720585 + | hypothetical protein Rfer_0685 722591 - 720615 - | acyltransferase 3 TERM 640 720834 - 720815 - G 90 -4.2 -5.40072 | opp_overlap 720818, overlap 720818 TTGCGTTCAAAAAAA TAAGCACG TCAG CGCGCTTG AATTGATATTCGGCT TERM 641 720831 - 720818 - G 81 -5.9 -4.79949 | opp_overlap 720818, overlap 720815 CGTTCAAAAAAATAA GCACG TCAG CGCGC TTGAATTGATATTCG TERM 642 721667 - 721680 + g 70 -3.8 -4.72272 | GCAGCTCGGGGTTGT TGCC AAGCCA GGCA TTTTTCATGAAGGCA Rfer_0686 723699 - 722584 - | hypothetical protein Rfer_0687 724690 - 723713 - | glycosyl transferase family protein TERM 643 724343 - 724353 + g 70 -4 -4.65916 | GCGCATCAGTTCCAG TTGA CGT TCAA TTTTGTTGGACTCCC Rfer_0688 725346 - 724759 - | acetyltransferase Rfer_0689 726452 - 725343 - | DegT/DnrJ/EryC1/StrS aminotransferase Rfer_0690 727398 - 726457 - | WxcM-like TERM 644 727242 - 727252 + g 76 -6.8 -4.52589 | opp_overlap 727248 TGACATCATCGCCAA CGAC AAC GTCG TTTTCTATAAAAACA Rfer_0691 728910 - 727402 - | polysaccharide biosynthesis protein TERM 645 728620 - 728588 - G 70 -4.8 -4.56597 | gap 1, overlap 728590 GGCTCCCGGTAAAAA CCCGCCGCTGG-CAC CGCC ATGACCAGCAGCATG ATTGATATGGCAACG Rfer_0692 729708 - 728992 - | TPR repeat-containing protein Rfer_0693 729885 - 730583 + | hypothetical protein Rfer_0694 731453 - 730587 - | esterase/lipase/thioesterase family protein TERM 646 731671 - 731688 + r 100 -14.1 -4.07568 | opp_overlap 731671 AGCACTTTGAAAAAA GCCCCGC AATG GCGGGGC TTTTCACGGCGAGAC TERM 647 731688 - 731671 - R 100 -14.1 -5.03715 | opp_overlap 731671 AGCACTTTGAAAAAA GCCCCGC AATG GCGGGGC TTTTCACGGCGAGAC Rfer_0695 732471 - 731710 - | hypothetical protein TERM 648 732542 - 732522 - R 73 -5.4 -4.65916 | opp_overlap 732522 GGTACCGTAACAAAA TGTTGCAC GATGT GTGCCACA TATTCAGGAAAATCT Rfer_0696 733749 - 732865 - | regulatory protein, LuxR TERM 649 733750 - 733775 + r 74 -2.6 -5.12617 | gap 1, overlap 733752 TCTTTGCTCCCTCAT TAGGCATCACA GTGAG TGTG-TGCCAA TTTTTTCAATCGTTG Rfer_0697 734653 - 733781 - | esterase/lipase/thioesterase family protein TERM 650 733987 - 734020 + g 74 -12.4 -3.14132 | gap 1 ATTCCAGTCGCTGTG TCGGCCCTGG-GCCG GCAGG TGGCGCCAGGGCCGC TTGCTCCAGGCCAGA TERM 651 734212 - 734168 - G 77 -11.3 -3.63515 | overlap 734169 TTTGAGGCGCAAGAA TTGTTGCAGCAGCGGCCTGCC GGC GGCGGGCGGCTGCCAGAACAG AAAGTTGCAGGGCGC TERM 652 734211 - 734169 - G 77 -14.8 -2.77895 | overlap 734168 TTGAGGCGCAAGAAT TGTTGCAGCAGCGGCCTGCC GGC GGCGGGCGGCTGCCAGAACA GAAAGTTGCAGGGCG TERM 653 734474 - 734498 + g 76 -12.2 -3.37493 | gap 1, overlap 734477 CAGCGCACGCGCCTG CAAGGC-CGCC ATGT GGCGGGCCTTG TTCATCTCTTCGGCA Rfer_0698 734917 - 734666 - | hypothetical protein Rfer_0699 735024 - 736661 + | AMP-dependent synthetase and ligase TERM 654 736788 - 736827 + G 75 -2.8 -4.89852 | gap 1, overlap 736789 TGACCGTGGGTGGCG AGCGTTTGTCATTGCTTGC CGC GCGGGTGG-GGCAAACGCC TTTTTATGCCTATGA Rfer_0700 736703 - 737947 + | Orn/DAP/Arg decarboxylase 2 TERM 655 738044 - 738059 + G 78 -6.8 -4.63586 | CCCTTTGTGGCCGAT GGCGGT GTTG ACCGTC TTTTCTCTCTGGTGT TERM 656 738145 - 738165 + G 76 -5.4 -4.59853 | CGCTGCTGAATTTTT CAAGCTGG ACCGG CTGGCTTG TTTTTGAGGAATTCG TERM 657 738196 - 738211 + G 72 -11.8 -3.32343 | ACATCCTGCTGCTGG GCGCCC TGGC GGGCGC TTATGGGCCTCTAGC TERM 658 738649 - 738665 + G 74 -6.5 -4.38927 | overlap 738650 CGATAGACGGTTACC TGGCGTT GGC GACGCCG TTTCTTGTGTGGGCC TERM 659 739431 - 739403 - g 78 -6.7 -4.68593 | overlap 739415 739418 TTTACCAGGCAAAAA TGACTGGCAAAAC ATG GTGCTGCCACTCA AAGGGCAGACCTTGG Rfer_0701 737940 - 739898 + | hypothetical protein TERM 660 740002 - 739992 - f 70 -5.4 -4.49756 | overlap 739994 TTGTAAAGACGAAAA CTTG ATC CAAG TCAGGACCATGTTTC TERM 661 741125 - 741155 + G 71 -6.1 -4.37092 | gap 2 CGCGCTGGGCCCAGG CGGCCGACGACCGGG TGA CACGG--GTCGGTCG TTTTATCCGCAAGCT TERM 662 741225 - 741248 + G 77 -8 -4.30995 | opp_overlap 741221 TGGGAACATGAGTCT GGTCGGGCCG CGCC CGGAGCGACC TTATTTTGTGGACAA Rfer_0702 740101 - 741483 + | undecaprenyl-phosphate galactosephosphotransferase TERM 663 743069 - 743053 - g 81 -7.9 -4.59773 | TCTGATGCTCAAAAA CGCCAAG CGC CTGGGCG ATAACCCGGAATTTC Rfer_0703 741536 - 743647 + | periplasmic sensor signal transduction histidine kinase TERM 664 743732 - 743708 - g 77 -3.6 -4.87389 | gap 1, opp_overlap 743712, overlap 743712 CACTGCAAAAACAAA TC-AAGTGGTC GCTC GACCGCTTTGA ATCAGTGACTGCCCA TERM 665 744073 - 744045 - g 93 -10.9 -4.35524 | overlap 744047 GCTGCAAAGGGAAAA CCGGCGGCTGCAG GCG CTGCAGCAACCCG ATGCCATGGCAGGCC Rfer_0704 743644 - 745005 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 666 745491 - 745530 + G 76 -9 -4.0896 | overlap 745516 745526 GAGAGCGCGAGCAGG CCCAGGCGAGCCTGCAGG CCGC CCTGCTGGCGGACCCGGG TTTTGCGCCGGCTTT TERM 667 746306 - 746261 - g 93 -11.8 -4.40804 | gap 1, opp_overlap 746261 746259 746258, overlap 746265 CAGGACGGCAGAAAA CGGACGTCGCTGGCGCTCACC CGTTT GGTGAGCGGC-GCGACAGACG GTGCTTTTGATGAGT TERM 668 746302 - 746265 - g 73 -14.2 -2.80345 | gap 1, opp_overlap 746261 746259 746258, overlap 746261 ACGGCAGAAAACGGA CGTCGCTGGCGCTCACC CGTTT GGTGAGCGGC-GCGACA GACGGTGCTTTTGAT TERM 669 746460 - 746440 - g 72 -2.4 -4.82901 | overlap 746452 CGGGCTGGAGAAAAA GCAGCCGG ACAAG CCGTTTGC GGCGCAGCTGCGGGC TERM 670 746681 - 746656 - g 100 -12.6 -4.64598 | gap 1 CAAGGACCCCAAAAA CGGCCAG-GCC TGGTT GGCGCTGGCCG AACTCGCGTCCCGGG Rfer_0705 745043 - 747817 + | tetratricopeptide TPR_2 TERM 671 748524 - 748497 - g 73 -13.4 -2.78712 | gap 1, overlap 748494 CGCCCAACTGAACTA CGCGGTTGG-GGC CAA GCCGCCCACCGCG TGCGTGACCGATGCC Rfer_0706 747988 - 748641 + | twin-arginine translocation pathway signal Rfer_0707 748628 - 748975 + | hypothetical protein Rfer_0708 748972 - 749889 + | HPr kinase Rfer_0709 749886 - 751004 + | hypothetical protein Rfer_0710 751080 - 751865 + | peptidase S1 and S6, chymotrypsin/Hap Rfer_0711 753380 - 751893 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 672 752665 - 752714 + g 80 -11.4 -3.72576 | gap 1, opp_overlap 752699, overlap 752666 TCGCCATCGGTTGAG CCCTGCCGCCACG-CGTTTTCGC AGGCC GCCAGAATGTCGGGGCGGCAGGC TTTCATGGCGGACAG TERM 673 752666 - 752713 + g 77 -14.9 -2.83403 | gap 1, opp_overlap 752699, overlap 752665 CGCCATCGGTTGAGC CCTGCCGCCACG-CGTTTTCGC AGGCC GCCAGAATGTCGGGGCGGCAGG CTTTCATGGCGGACA TERM 674 752875 - 752829 - G 82 -11.5 -3.85698 | gap 1, overlap 752830 GGGCTTCTCGACAAA GCGGGCCATCAGGCGGGCGTTG GCCT CTA-GCGTGCCTGATGGCCCGG CGTAAGCGGCGCCGG TERM 675 752874 - 752830 - G 79 -15 -2.91276 | gap 1, overlap 752829 GGCTTCTCGACAAAG CGGGCCATCAGGCGGGCGTTG GCCT CTA-GCGTGCCTGATGGCCCG GCGTAAGCGGCGCCG Rfer_0712 754546 - 753416 - | nucleotidyl transferase Rfer_0713 755591 - 754572 - | UDP-glucose 4-epimerase TERM 676 755572 - 755560 - G 70 -10.5 -3.50393 | TGGGAGCCGATATAA CCGGC ACC GCCGG TGACAAAAATCATGG Rfer_0714 756529 - 755627 - | dTDP-4-dehydrorhamnose reductase TERM 677 756260 - 756310 + g 82 -10.9 -3.85817 | gap 1 CTCGGCGGCCAGCAC GCCGGGGGCCAGCGCGTTCAGGGC GCGG GCCC-GTTCGGGCTCGGCCTCGGC TTTGTCCACGGCGGT Rfer_0715 757695 - 756634 - | dTDP-glucose 4,6-dehydratase TERM 678 757562 - 757537 - G 73 -9.7 -3.85698 | gap 1, overlap 757541 GTCGCCTTGCACAAA CACATGGCGCGC ATC GCCCGCCA-GTG AGGCCAGGTTTTGCA TERM 679 757679 - 757667 - G 78 -10.5 -3.90112 | TTGCTGCCAATGAAA CCGGC GCC GCCGG TGACAAGAATCGTCA Rfer_0716 759069 - 757774 - | acetyl-CoA hydrolase/transferase TERM 680 758844 - 758833 - G 95 -7.2 -5.34309 | opp_overlap 758838 758838, overlap 758834 758835 AGCACCAAAGAAAAA CGCC ACGT GGCG CACATGCTCCACCGT TERM 681 759015 - 759039 + g 100 -4.3 -6.26417 | gap 1, overlap 759018 CGTTTTTGACCTGAT CGATGGCATC TTGCGC GGTGCCA-CG TTTTTTTTTGTACTG Rfer_0717 760001 - 759180 - | aldose 1-epimerase TERM 682 759876 - 759828 - G 100 -18 -3.57561 | gap 1, overlap 759830 GGCGAACTGCGGAAA CAGCACCGGCAC-GCCACCGCGC GCGG GCGCGGCGGCTGAACCGGGGCGG GGCACGCTCACCGAC TERM 683 759874 - 759830 - G 95 -19.2 -3.36569 | gap 1, overlap 759828 CGAACTGCGGAAACA GCACCGGCAC-GCCACCGCGC GCGG GCGCGGCGGCTGAACCGGGGC GGGGCACGCTCACCG TERM 684 760183 - 760229 + r 75 -12.9 -2.51133 | gap 1, opp_overlap 760178, overlap 760182 CTGCATGACAGCGCC AGCTTGCGGCGCCAGGGTGAGT GCCA ACGCAGCC-GGCGCCGCCAGCA ATTGCTGGATCAGTC Rfer_0719 761070 - 760855 - | hypothetical protein Rfer_0720 762010 - 761054 - | hypothetical protein TERM 685 762379 - 762390 + H 78 -5.8 -4.7373 | overlap 762362 GAAGCGACAGTTCCA GTCG TCTT CGAC TTTTTCGTGGCATCA rplM 762655 - 763086 + | 50S ribosomal protein L13 Rfer_0722 763097 - 763489 + | ribosomal protein S9 TERM 686 763529 - 763558 + F 100 -16.5 -3.81339 | opp_overlap 763516 763529 CATGTTGCCAAACAA CAGCCGCCAGAAT TCAG ATTCCGGCGGCTG TTTGCATTCTGGCTC TERM 687 763558 - 763529 - f 100 -18.7 -3.9122 | opp_overlap 763529, overlap 763516 CATGTTGCCAAACAA CAGCCGCCAGAAT TCAG ATTCCGGCGGCTG TTTGCATTCTGGCTC TERM 688 763648 - 763691 + G 89 -7.5 -5.07011 | overlap 763627 763646 763652 GCGCATGGCGGTGCG CAGCG-CCATGCCCTGGCC CTTGCGTT GGCTGGGGC-TGGCCGTTG TTTTTGGTTTCTGTG TERM 689 764210 - 764222 + G 70 -3.3 -4.62069 | opp_overlap 764219 CTGAAACAGTATGGC CGCAT GGA AGGCG TTTTTGAACTGCCGG Rfer_0723 763589 - 764317 + | hypothetical protein Rfer_0724 764354 - 764755 + | hypothetical protein Rfer_0725 764813 - 765175 + | iron-sulfur cluster insertion protein ErpA TERM 690 765222 - 765248 + T 100 -13.6 -4.59853 | opp_overlap 765226, overlap 765226 GTAGATCGCACCCAA GATACGGGCGCC GCT GGCGCCCGTTAC TTTTTCCAGGCTTGA anmK 766367 - 765198 - | anhydro-N-acetylmuramic acid kinase TERM 691 765226 - 765244 + g 100 -17.4 -3.80855 | opp_overlap 765226, overlap 765222 ATCGCACCCAAGATA CGGGCGCC GCT GGCGCCCG TTACTTTTTCCAGGC TERM 692 765244 - 765226 - G 87 -17.4 -3.10522 | opp_overlap 765226 765222 ATCGCACCCAAGATA CGGGCGCC GCT GGCGCCCG TTACTTTTTCCAGGC TERM 693 766272 - 766255 - G 82 -11.3 -3.86194 | AAGGCCGTCGACAAA GGCGCAT TGAC ATGCGCC AAAACACGCAGGTGC TERM 694 766418 - 766456 + r 70 -6.7 -4.07687 | gap 1 AATTACTGTGTGCTG CCGGTTTGCA-TTGATGC CGCT GCCGCAAGTGCAACCCGG TTTTCGGCGGCGAGT Rfer_0727 767802 - 766405 - | peptidase M23B Rfer_0728 767940 - 769184 + | tyrosyl-tRNA synthetase Rfer_0729 769192 - 770106 + | cation diffusion facilitator family transporter Rfer_0730 770126 - 770605 + | D-tyrosyl-tRNA deacylase TERM 695 771256 - 771232 - g 95 -11.3 -4.59773 | CTGGACGCGCAAAAA GCCGGGGCGGT GCC ACTGCCCCCGC CGGTGAAGAGTCTGA Rfer_0731 770686 - 771318 + | putative ubiquinone biosynthesis monooxygenase COQ7 Rfer_0732 771769 - 771320 - | OsmC-like protein TERM 696 771623 - 771644 + g 75 -7.9 -4.1466 | gap 1 CGTCTCCAGCGGGCG CGG-GGCCAG ATT CAGGCCACCG TTTTCAGGCTTGGCT TERM 697 771808 - 771822 + H 76 -9.2 -4.05446 | AAAGGTGTGAATTGT CGCCTG AGG CGGGCG TTTATCATTGACAGC Rfer_0733 771855 - 773402 + | threonine dehydratase TERM 698 773539 - 773557 + G 84 -10.2 -4.21194 | GCGCCTGGACCTGCC CGCCAAGC CGG GCGTGGCG TTTTCGCTGGTGCAA TERM 699 773893 - 773903 + G 73 -4.6 -4.69053 | GCGCATTGCCTTTGA CGGT GAC GCCG TTTTGTTCAGTGATG Rfer_0734 773399 - 774304 + | 5-nucleotidase TERM 700 775201 - 775214 + G 75 -2.3 -5.00616 | opp_overlap 775197 775184, overlap 775202 CACAGAAAAACCTGG TCTGG TTCA CCAGC TTTTTTGGCCAGGCG TERM 701 775850 - 775836 - g 76 -5.6 -4.65895 | GCCTGGAGCCAAAAA CTCTCC GGC GGCGAG CAGCAACGGCTGGCC Rfer_0735 774297 - 776138 + | ABC transporter-like Rfer_0736 776842 - 776111 - | ExsB TERM 702 776265 - 776291 + g 71 -7.9 -4.08216 | gap 1, opp_overlap 776265 776266 ATCAGGTCCACCAAA GCCTGGC-CGCC GCCC GGCGTGCCGGAC TTTTCACCCAGCTCG Rfer_0737 777325 - 776879 - | hypothetical protein TERM 703 777395 - 777408 + r 90 -5.2 -5.24129 | overlap 777393 777392 TGTTTCAGTAGTTGG CCGG ATCAGG CCGG TTTTTTGTGCGCACG Rfer_0738 778416 - 777400 - | PhoH-like protein TERM 704 777547 - 777522 - G 76 -12.5 -3.29511 | overlap 777523 CGTAGGCGTCCACAA TGCGCGCCACC AGCG GGTGGCGCACC ACATCCGCGCTGGTC TERM 705 777546 - 777523 - G 78 -16 -2.57564 | overlap 777522 GTAGGCGTCCACAAT GCGCGCCACC AGCG GGTGGCGCAC CACATCCGCGCTGGT TERM 706 778545 - 778558 + G 70 -3.8 -4.58395 | GGCTATGAGGTTTTG GTGC CGATGA GCAC TTTTTACAACCTGCC TERM 707 778826 - 778816 - g 81 -8.2 -4.64676 | GTATCGGCAAGAAAA CCGC CGA GCGG CTGCTGCTGGAGCTC ruvA 778458 - 779030 + | Holliday junction DNA helicase motor protein Rfer_0740 779058 - 779303 + | hypothetical protein Rfer_0741 779356 - 779859 + | NLP/P60 Rfer_0742 779914 - 780348 + | hypothetical protein Rfer_0743 780844 - 780374 - | hypothetical protein Rfer_0744 782099 - 780936 - | cytochrome B561 TERM 708 781015 - 781027 + g 70 -3.3 -4.67038 | overlap 781006 GCATCGCTGTGGCAG GCGGC GCA GTTGC TTTTGCTTTTCACCA TERM 709 781201 - 781258 + g 80 -11.9 -3.73224 | gap 1, opp_overlap 781200, overlap 781255 TTCGCCGTCATGAAG GCCAGCACCGCGGCAGTGGTGCTGGCGT CGA GCCCCAG-GTCGGTGCCGAAGTGCTGGC TTTGCTCGGCCATGA TERM 710 782173 - 782139 - R 91 -11.5 -4.30576 | gap 2, opp_overlap 782161 782162, overlap 782141 782160 GGGGGAGGAGGAAAA GGC--GCACCAGCCTTC GAC GAAGGCCGGCGCTTGCC GGATTACTTCGGGAT TERM 711 782169 - 782141 - R 75 -13.1 -2.50493 | opp_overlap 782161 782162, overlap 782139 782160 GGGAGGAGGAAAAGG CGCACCAGCCTTC GAC GAAGGCCGGCGCT TGCCGGATTACTTCG Rfer_0745 782659 - 782177 - | diheme cytochrome c Rfer_0746 783074 - 782670 - | cytochrome c-like protein TERM 712 782883 - 782903 + g 71 -9 -3.74693 | gap 1, opp_overlap 782894, overlap 782894 ATCGGTATGGCACGA GGCGCACGA CAGC TCG-GCGCC TTTGGTGCCGTAGAG Rfer_0747 783594 - 783172 - | CoA-binding TERM 713 783455 - 783420 - G 84 -11.8 -4.07568 | overlap 783421 CCGGCTCGCCCAAAA TGGTCAACCCGCTGGC AGCC GCGACCGGGTTGACCG GAATGATGCGCCAGC TERM 714 783454 - 783421 - G 80 -15.3 -3.04398 | overlap 783420 CGGCTCGCCCAAAAT GGTCAACCCGCTGGC AGCC GCGACCGGGTTGACC GGAATGATGCGCCAG Rfer_0748 785773 - 783599 - | cytochrome c biogenesis protein, transmembrane protein TERM 715 784339 - 784319 - G 76 -12.5 -3.38604 | overlap 784312 CATGAAAATCAGCAA GGCCTGCAG CGG CGGCAGGCC CAGCGCCAAGCCTAG TERM 716 784433 - 784421 - G 81 -6.2 -4.83615 | opp_overlap 784420 CACGCCCGACAAAAA GGCG TTGAC CGCC GGGTTTTTGGCCTCC Rfer_0749 786211 - 785867 - | hypothetical protein TERM 717 786195 - 786177 - G 88 -3 -5.47218 | opp_overlap 786181, overlap 786180 786181 TCCCAGGCAAAAAAA GAATCGCC GGT GGCGTTTT TGCTGGCGCGGCTCA TERM 718 786192 - 786180 - G 78 -4.7 -4.8236 | opp_overlap 786181, overlap 786177 786181 CAGGCAAAAAAAGAA TCGCC GGT GGCGT TTTTGCTGGCGCGGC TERM 719 786181 - 786191 + g 81 -8.2 -4.72272 | opp_overlap 786181 786180 786177 AGGCAAAAAAAGAAT CGCC GGT GGCG TTTTTGCTGGCGCGG Rfer_0750 786434 - 786763 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 720 786786 - 786752 - f 71 -10 -3.58037 | opp_overlap 786745, overlap 786753 786755 CACGAAGCGCCGAAA CGACTGATGTGAGGCC ACC GGCCTGAGATCAGTCC CAGCCGCCTGCTCCG TERM 721 786785 - 786753 - f 79 -13.5 -2.74501 | opp_overlap 786745, overlap 786752 786755 ACGAAGCGCCGAAAC GACTGATGTGAGGCC ACC GGCCTGAGATCAGTC CCAGCCGCCTGCTCC TERM 722 786790 - 786809 + F 100 -8.5 -5.75342 | TGAGATCAGTCCCAG CCGCCTG CTCCGC CGGGCGG TTTTTTTTGGGCCCC TERM 723 787268 - 787254 - g 84 -5.6 -5.00616 | overlap 787256 CCTTGCGGGAAAAAA TGGCGC TCA GTGCCA GCGCGGAGGAACTGC Rfer_0751 786857 - 787324 + | PTS IIA-like nitrogen-regulatory protein PtsN TERM 724 787384 - 787395 + G 70 -3.6 -4.60924 | AGCCTAACGTTGTCA GCGC CGAT GTGC TTTTTGACGAGTTTC Rfer_0752 787365 - 788315 + | HPr kinase/phosphorylase Rfer_0753 788804 - 788358 - | ferric uptake regulator family protein TERM 725 788425 - 788480 + g 74 -3.2 -4.81249 | gap 1, opp_overlap 788430 788434, overlap 788425 788426 CAGTGGGCATAGAGA C-TCAATGCATGGTCGGCAATGGCAAA TCC TTTGGCCTTGGCGACCGCGCGCTGGCG TTTTTCGATTTCCGG TERM 726 789351 - 789329 - g 70 -9.8 -3.53012 | overlap 789313 789330 789341 TGCCGGTGCTGGAAA TGCCGCCAGA GAG TCTGACGGCG GCGCCGGCCCCGATA TERM 727 789350 - 789330 - g 73 -13.3 -2.71712 | overlap 789329 789313 789341 GCCGGTGCTGGAAAT GCCGCCAGA GAG TCTGACGGC GGCGCCGGCCCCGAT Rfer_0754 788926 - 789438 + | SmpA/OmlA TERM 728 789431 - 789443 + F 85 -4.7 -5.18561 | CGCTGGAGCCGGTGG CCCGC TAA GCCGG TTTTTTCAATCTTTC TERM 729 789600 - 789637 + G 70 -4.7 -4.56597 | gap 1 CCGGTGCACTGGACG TGCCGAC-CAGCCCCGCC CTG GGTGCGGATGCGATGGCA TTTTTGGGCCAGACC TERM 730 789832 - 789814 - g 71 -8 -4.11692 | overlap 789825 CAGTGACGCGCAAAA GGCCGAGA TCA CCGCGGCC ACGCGTGACATTGCC TERM 731 790212 - 790236 + G 77 -7.8 -4.42386 | gap 1, overlap 790211 GCCGTGCCACCTATG CGCAGGGCAGC TTGC GC-GCGCTGCG TTTTCTAAGTCAACA TERM 732 790292 - 790256 - g 78 -3 -5.13741 | gap 1, overlap 790257 CTAAGTCAACAAAAA GCAGGTT-TGTACGACA TGGC TGACGTACTGAACCTGA AATGAACGCGGCCCA Rfer_0755 789482 - 790297 + | dihydrodipicolinate reductase TERM 733 790787 - 790769 - g 70 -4.4 -4.43844 | TGACGATCGACAAAA TCTCCGGC CCC GTCGGCGA AGCGCTGATCATGAC Rfer_0756 790294 - 790947 + | MotA/TolQ/ExbB proton channel Rfer_0757 790968 - 791396 + | biopolymer transport protein ExbD/TolR TERM 734 791497 - 791475 - g 77 -11.3 -3.63515 | CTCGACGTCGAACAA GCCGCCCAA AGTCA TTGGACGGC AATGGATGCCTACCG TERM 735 791729 - 791717 - g 84 -9.1 -4.56597 | opp_overlap 791721, overlap 791719 CGCGGCGCTGAAAAA CGGTG TGC CACCG GCCCAGTGGACCTTT TERM 736 792385 - 792369 - g 85 -3.5 -5.31877 | overlap 792370 ACGCAGGAGAAAAAA GGCCTGG ACA CCGGGCT GATCGTCACCCATCC TERM 737 792736 - 792712 - g 95 -3.4 -5.60993 | gap 1, opp_overlap 792715, overlap 792713 792715 TGGGTGAGAAAAAAA CCACCTGGCGC CTGC GCGACTGG-GG TGTGAGCCGCCAGCG Rfer_0758 791439 - 794117 + | leucyl-tRNA synthetase Rfer_0759 794128 - 794619 + | rare lipoprotein B TERM 738 795579 - 795608 + G 71 -6.3 -4.41616 | gap 1, overlap 795573 795582 GCCGATGGCCTTGCG CGAGCAGCGCGTGT GGG GCACGCGC-GAGCG TTTGTTTGAACGCGT holA 794734 - 795798 + | DNA polymerase III subunit delta TERM 739 796624 - 796592 - g 74 -4 -4.76644 | gap 1, overlap 796593 AACAGCGACCAAAAA CGCAGC-GCTTCGCA AGCT TGCCGGGCTGCTGCG CGCCAACGTGAACGC TERM 740 796811 - 796859 + G 82 -13 -3.67026 | opp_overlap 796808 796811, overlap 796813 796814 CATTGGCATGAAGCA GCAGCCCAGCGGCATCCGCGTC GGGCA GATGCGGGTGCCGATTGGCGTC TTTGGCATGATTTTT TERM 741 796813 - 796857 + G 81 -14.2 -3.40134 | opp_overlap 796808 796811, overlap 796811 796814 TTGGCATGAAGCAGC AGCCCAGCGGCATCCGCGTC GGGCA GATGCGGGTGCCGATTGGCG TCTTTGGCATGATTT TERM 742 796814 - 796856 + G 85 -17.7 -2.63357 | opp_overlap 796808 796811, overlap 796813 796811 TGGCATGAAGCAGCA GCCCAGCGGCATCCGCGTC GGGCA GATGCGGGTGCCGATTGGC GTCTTTGGCATGATT Rfer_0761 796494 - 797828 + | gamma-glutamyl phosphate reductase Rfer_0762 797891 - 798217 + | hypothetical protein TERM 743 798944 - 798970 + G 91 -13.8 -3.91716 | ATGGGCAAGTTGTTG GGGATTGATCCG TGG CTGATCAATCCC TTGTTTGAAAAATGC Rfer_0763 798269 - 799564 + | glutamate--cysteine ligase GshA Rfer_0764 799574 - 801442 + | K+ potassium transporter Rfer_0766 803273 - 802377 - | glutamine amidotransferase, class-II Rfer_0765 801508 - 802455 + | glutathione synthetase TERM 744 803491 - 803507 + G 70 -4.3 -4.56597 | overlap 803492 803493 CCGAGGAAATTGCGG TGGCGCT GGA AGCGCGG TTTTTGGACAACCAG TERM 745 803754 - 803795 + G 78 -10.7 -3.92075 | overlap 803783 TTTCGGGACATCGCC GCCGGCAAGCCCGGCACGC TGAC GCATGTCGGGCTTGACACC TTTGTCGATCCGCGT TERM 746 804365 - 804341 - g 76 -5.6 -4.63218 | GGCGGCCGAAGAAAA GGTGATCGAC CTGAT GACGCTCACC GCCGAGCCCGGTGTC Rfer_0767 803337 - 805289 + | coenzyme A transferase TERM 747 805612 - 805636 + G 70 -10.8 -3.53444 | gap 1 CAGCGCGGCACGCGT CGTCATCGAGC GCCA GCTCGATG-CG TTTGAAGCCCAGTGG Rfer_0768 805322 - 806185 + | hypothetical protein TERM 748 806484 - 806500 + GT 73 -9.4 -3.80573 | GCGTTGCGTCTGGTG CCCGCA CTCCA TGCGGG TTTGATGCTGGTGGC TERM 749 806881 - 806918 + GT 78 -2.7 -5.09895 | gap 1, overlap 806884 TTGCCCTGATTGCCT TGCCGTG-GTTTGTGCTG GCG CAGCAGAAATACCCGTCA TTTTTTGACTACATG TERM 750 807661 - 807649 - gT 73 -4.7 -4.65747 | overlap 807650 CAACGGGCAACAAAA TGGCC GAA GGCCT GGCGGGCTGGAAACT Rfer_0770 808091 - 807723 - | GtrA-like protein Rfer_0769 806214 - 807782 + | glycosyl transferase family protein Rfer_0771 809107 - 808088 - | glycosyl transferase family protein TERM 751 809131 - 809155 + r 77 -4.3 -4.89393 | gap 2, opp_overlap 809126 809131 CATGCCAAAAGAAAA CCCCGCTTCAG CAAAA CTG--GCGGGG TTTTTGTGCAATTTA TERM 752 809155 - 809131 - R 82 -5 -5.09259 | gap 2, opp_overlap 809131, overlap 809126 CATGCCAAAAGAAAA CCCCGCTTCAGC AAA ACTG--GCGGGG TTTTTGTGCAATTTA Rfer_0772 809541 - 809203 - | PsiF TERM 753 809263 - 809283 + g 76 -6.7 -4.45175 | TTTGAGCGCCTTGTC GCCCGCATC CTT GTTGCAGGC TTTCATTTTTTCCTG TERM 754 809759 - 809737 - g 81 -7.6 -4.58283 | CAAGCGCTTGAAAAA TTGTCCCCCG GCG CGGGGTCCAA AGCCGTTTTTGAGTC TERM 755 810295 - 810276 - g 72 -11.4 -3.30124 | opp_overlap 810275, overlap 810291 GCCCAGTGGCGAGAA CGCCGCTG CCTA CAACGGCG ATTACATCGCCGACA TERM 756 810307 - 810291 - g 76 -12.3 -3.28712 | opp_overlap 810275, overlap 810276 CGCCGCTGCCTACAA CGGCGAT TAC ATCGCCG ACATTGCCGCTGACT argS 809683 - 811380 + | arginyl-tRNA synthetase TERM 757 811729 - 811689 - g 82 -11.8 -3.97368 | gap 1, overlap 811695 CCGCCAAGGCAGAAA CACAGACG-GGCGCCGACA CCGG TGCCGGTGCCGCGCCAGTG CAAGTGCCAGCGCCA TERM 758 811727 - 811695 - g 78 -13.4 -3.23737 | gap 1, overlap 811689 AGGCAGAAACACAGA CGGGCGCCGACACCG GTGC CGGTGCCG-CGCCAG TGCAAGTGCCAGCGC Rfer_0774 811448 - 812083 + | sporulation related TERM 759 812587 - 812569 - g 84 -10.2 -4.22524 | opp_overlap 812568 812567 ACAGTGAAAAGCAAA GCCTGGCC ACG GGCGAGGC GATTGTCGATTGGGT Rfer_0775 812157 - 812831 + | DSBA oxidoreductase TERM 760 812896 - 812922 + F 70 -2.9 -4.70515 | overlap 812882 GTGCCCGGTGCCTGT GCACGAGGCAT GTGTG ATCCTGCGTGC TTTGTTTTCCCTCTC TERM 761 813586 - 813552 - g 88 -13.4 -3.57263 | overlap 813557 ATGCTGACGCCGAAA CCCAATGCCGCCGCAG CGG CAGCGGCGGCAACGGC GCCCGCCAATGCAGC TERM 762 813581 - 813557 - g 93 -17.1 -3.28001 | overlap 813552 GACGCCGAAACCCAA TGCCGCCGCAG CGG CAGCGGCGGCA ACGGCGCCCGCCAAT Rfer_0776 813018 - 813659 + | OstA-like protein TERM 763 813802 - 813847 + G 81 -13.9 -3.40309 | GGTCTGCAAGGGCGA GGTGGTCGGTTTGCTGGGGCC CAAC GGCGCCGGCAAAACGACATCC TTCTACATGATTGTC Rfer_0777 813659 - 814453 + | ABC transporter related TERM 764 815229 - 815257 + G 86 -13.8 -3.51934 | overlap 815227 CGGCTAGAGCCGGCC CGCGCCGCCACC GTGCA GGTGGCGCTGCG TATTTGTGCCCAACC Rfer_0778 814467 - 816059 + | sigma-54 (RpoN) TERM 765 816592 - 816574 - g 80 -14.6 -3.01712 | overlap 816577 CGGCTGGCGCGAAGA CAAGGGCG ACG CGCCCTTG AAAGAAACCCTGGCC TERM 766 816589 - 816577 - g 73 -10.5 -3.65812 | overlap 816574 CTGGCGCGAAGACAA GGGCG ACG CGCCC TTGAAAGAAACCCTG TERM 767 816629 - 816600 - g 87 -9.9 -4.41348 | gap 1, opp_overlap 816615, overlap 816602 CGCCCTTGAAAGAAA CCCTGGCCGCC-GC CAT GCTGGCCGCCAGTG GCTGGGCCGATGGCG TERM 768 816733 - 816747 + G 71 -7 -4.27316 | CTGCAATATTGCCGC CGGCTC GCT GCGCCG TTTTGCCTTCGAGAA Rfer_0779 816056 - 817342 + | putative RNA methylase Rfer_0780 817339 - 817749 + | hypothetical protein Rfer_0781 817840 - 819516 + | putative signal transduction histidine kinase Rfer_0782 819716 - 820462 + | two component LuxR family transcriptional regulator TERM 769 820514 - 820541 + F 78 -6.9 -4.61747 | opp_overlap 820504 820503, overlap 820512 820513 CAAATCGCCTATGGG GCGCCGCGC ATTCTCACTG GCACGGCGC TTTTCTAATTCTTAG Rfer_0783 820663 - 822093 + | hypothetical protein Rfer_0784 822376 - 823329 + | hypothetical protein TERM 770 824496 - 824509 + G 73 -4.5 -4.70583 | overlap 824497 GGCGCCGCGACGGGT TCGGT GCTG ACCGG TTTTATCTTGATGGA Rfer_0785 823326 - 825605 + | putative spermidine synthase Rfer_0786 825602 - 826267 + | isoprenylcysteine carboxyl methyltransferase Rfer_0787 826360 - 826866 + | response regulator receiver domain-containing protein Rfer_0788 826841 - 827059 + | Flp/Fap pilin component TERM 771 827080 - 827070 - f 72 -2.4 -4.84527 | TCTAGACAGGAAAAA CGCG AAT CGCT GGTCGGCGTTACAGC TERM 772 827143 - 827157 + F 70 -3.4 -4.82901 | overlap 827141 CGGATCGCAGGCAGG CGCTGC AGA GCGTCG TTTTTCTCACCGCAA Rfer_0789 827183 - 827359 + | Flp/Fap pilin component TERM 773 827358 - 827412 + F 91 -7.6 -4.84359 | opp_overlap 827374, overlap 827359 827360 CCCTGATTGGGTCCT AACGCCGCTCAGCCAAGGCGGAGCCC TCG GGTCTACGCCTTGGTTGACCATCGGA TTTTTATGCCCATCG TERM 774 827359 - 827411 + F 77 -11.1 -3.50133 | opp_overlap 827374, overlap 827358 827360 CCTGATTGGGTCCTA ACGCCGCTCAGCCAAGGCGGAGCCC TCG GGTCTACGCCTTGGTTGACCATCGG ATTTTTATGCCCATC TERM 775 827360 - 827410 + F 81 -14.6 -2.69598 | opp_overlap 827374, overlap 827359 827358 CTGATTGGGTCCTAA CGCCGCTCAGCCAAGGCGGAGCCC TCG GGTCTACGCCTTGGTTGACCATCG GATTTTTATGCCCAT Rfer_0790 827401 - 827979 + | peptidase A24A, prepilin type IV Rfer_0791 827993 - 829351 + | ATPase TERM 776 829722 - 829749 + G 70 -9.8 -3.43785 | GAACGATGTGGTTGG CGTGGCCGGC TTCGCGCT GCCGGGCACG TTCGTTGATGTGATG TERM 777 830047 - 830031 - g 78 -10.1 -3.85698 | GGGCGGCGCCACAAA GGCCGAA TTG CTCGGCC TGGCCAAATCTGAAC Rfer_0792 829348 - 830208 + | Flp pilus assembly CpaB TERM 778 830533 - 830519 - g 95 -12.8 -4.14392 | GGGCAATCCCGAAAA CGCGCG TGC CGCGCG CCCGGCCGATACCCC Rfer_0793 830247 - 831962 + | type II and III secretion system protein Rfer_0794 831962 - 832243 + | putative lipoprotein TERM 779 832312 - 832346 + G 70 -9.9 -3.45776 | gap 1, overlap 832315 TCGCCCGCCAGTCCC TGGCCGACGCG-CGCG TCAG CGCGGCGCGGTGGCGA TTGTGGTCGGTTTGA Rfer_0795 832277 - 833551 + | hypothetical protein Rfer_0796 833565 - 834035 + | TadE-like Rfer_0797 834032 - 834475 + | TadE-like Rfer_0798 834472 - 835647 + | response regulator receiver domain-containing protein Rfer_0799 835658 - 837016 + | type II secretion system protein E Rfer_0800 837027 - 837995 + | type II secretion system protein TERM 780 838284 - 838296 + G 73 -10.5 -3.63515 | CATTCGCAACGCCAA CGCCG CAT CGGCG TTCTTCGGCATCAAG Rfer_0801 838009 - 838947 + | type II secretion system protein TERM 781 839208 - 839190 - g 70 -10.2 -3.53224 | GACGCCTGGCGCAAA GCCGCGCT GGA AGCGCCGC AAGACGCCGACGTCA Rfer_0802 838962 - 840050 + | tetratricopeptide TPR_2 Rfer_0803 841703 - 840078 - | ferredoxin-dependent glutamate synthase TERM 782 840277 - 840313 + g 76 -9.9 -3.78953 | CGCGGCTGCACCAGC CCCGCCGCCTGCACCAG CTC CTGGAGCGCGCGCAGGG TTTGCTGGTGAAAGT TERM 783 841260 - 841223 - G 72 -12.7 -3.0806 | gap 1 CCGAAATGTTGAACA CGCTGGCGCTG-TAGGGC TGC GCCCGATCAGCGCCAATG GCGAGGCGAAAGTCG TERM 784 841641 - 841625 - G 80 -3.5 -5.1101 | overlap 841626 841637 CCACCAGCGAAAAAA TGGCCAG CAA CAGGCCG AAGCCGCTCAGACCC TERM 785 841924 - 841954 + G 76 -8.8 -4.08692 | overlap 841940 TCTGGACGACCTGCG CACCCGCTACGACG AGA CGCCGCAGTGGGAG TTTTGCGAAGGCTTC Rfer_0804 841784 - 842635 + | YecA Rfer_0805 843542 - 842661 - | Pirin-like TERM 786 843010 - 843034 + g 70 -9.9 -3.53444 | TGCGTGGTGTCGCGT GTCACGGCGCC ACT GATGCCGTGGC TTTCACCCGCAATCA Rfer_0806 843620 - 844558 + | LysR family transcriptional regulator Rfer_0807 845493 - 844561 - | LysR family transcriptional regulator TERM 787 844648 - 844635 - G 74 -3.7 -4.8667 | GATACTCCAGAAAAA CGCGC GTGC GCTCG GGCAAAAACTTGCGA Rfer_0808 845703 - 846011 + | hypothetical protein Rfer_0809 846233 - 846844 + | (Acyl-carrier protein) phosphodiesterase Rfer_0810 846869 - 847507 + | toluene tolerance TERM 788 847544 - 847534 - T 73 -5.4 -4.65895 | TCGCCTACGGAAAAA GTTG ATT CAAC AAATTACTGTCAGCC Rfer_0811 847788 - 847594 - | hypothetical protein Rfer_0812 848952 - 847825 - | hypothetical protein TERM 789 848232 - 848222 - G 75 -8.2 -4.25056 | opp_overlap 848222, overlap 848223 TAGTCGATGAAGAAA GCCG CGC CGGC GCTCAGCTTGTCGGC TERM 790 849128 - 849116 - g 77 -3.4 -4.87273 | AAGATGCTAGAAAAA CAGT AGCTG ACTG CGCAGATTTGGCGGG Rfer_0813 848974 - 849768 + | short-chain dehydrogenase/reductase SDR Rfer_0814 849801 - 850193 + | dihydroneopterin aldolase Rfer_0815 850214 - 851230 + | PP-loop Rfer_0816 851337 - 851975 + | phosphoglycerate mutase TERM 791 852518 - 852556 + G 82 -15.2 -3.21099 | opp_overlap 852524 GCGGCGACGGTGCGT GATACAGCCGCCAAGGCC GTG GGCCTGGGCGCCTGCGTC TTCATGCTCAGCGAC TERM 792 852550 - 852524 - g 75 -13.6 -2.87211 | opp_overlap 852518 ACGGTGCGTGATACA GCCGCCAAGGCC GTG GGCCTGGGCGCC TGCGTCTTCATGCTC Rfer_0817 852002 - 852712 + | YhhN-like Rfer_0818 852793 - 853398 + | phosphoserine phosphatase TERM 793 853826 - 853842 + G 70 -4.3 -4.56597 | overlap 853828 853841 TGCGCTCGCTCGCGT CACCGTG GCC CATGGCG TTTTTGCGGAAAGCG Rfer_0819 853623 - 854108 + | hypothetical protein TERM 794 854120 - 854152 + T 70 -2.8 -4.6951 | gap 2, overlap 854123 854124 ATGACGCATACGCCG CATCGG-TTG-ACCTG ATG CAGGTCCAAGCTGTTG TTTATTTTGCCTACT ruvB 855239 - 854163 - | Holliday junction DNA helicase B TERM 795 854399 - 854385 - G 74 -11.4 -3.53012 | CGGGCCGCCGTCAAA GCGGTG GAT CACCGC TTCCAGCAGCTTGCG TERM 796 855314 - 855274 - H 79 -13.2 -2.79831 | overlap 855308 855309 GGAAGCTTGACTATA GCGCGCGGCGAAGGGG TGAAGGGTG CCCCTACAACGCGCGC CCGGTGCAGGCGATC TERM 797 855819 - 855846 + G 84 -9.2 -4.56597 | gap 1, overlap 855819 855822 CCTCGATTCGCAAGG CC-CTCAACGGCA AAG TGCCGTTGATCGG TTTTTCAGGCAGCCC TERM 798 855822 - 855842 + G 75 -14.1 -2.83903 | overlap 855819 855819 CGATTCGCAAGGCCC TCAACGGCA AAG TGCCGTTGA TCGGTTTTTCAGGCA Rfer_0821 855395 - 856504 + | uroporphyrinogen decarboxylase TERM 799 856518 - 856532 + F 100 -7 -5.59655 | GAAGTCACTTTGAAC GGCCGG TGC CAGGCC TTTTTTGTTACTTTG TERM 800 857114 - 857161 + G 73 -9.9 -3.61715 | gap 2 TGCCCTGGACGGTAT TGCGCCGCTGA-G-CGCCAGCTG GCGC CAGCTGGTGACCTTTGCGGCCCA TTATTACCAGCGCTC Rfer_0822 856890 - 859091 + | primosomal protein N' Rfer_0823 859691 - 859191 - | hypothetical protein Rfer_0824 860836 - 859847 - | hypothetical protein Rfer_0825 862212 - 860857 - | FAD linked oxidase-like TERM 801 861658 - 861646 - G 100 -10.5 -4.72986 | GAGGTTGATGAAAAA CGCGC CCG GCGCG TTAAACTGCAAATGT TERM 802 862121 - 862143 + g 77 -11.2 -3.5774 | overlap 862122 CTGCGTTTTCCGAGA CCGAGCGGCG CCC CGCTGCTCGC TTTGCCGGATTGCAT TERM 803 862122 - 862142 + g 77 -14.7 -2.74322 | overlap 862121 TGCGTTTTCCGAGAC CGAGCGGCG CCC CGCTGCTCG CTTTGCCGGATTGCA Rfer_0826 863416 - 862202 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 804 862910 - 862896 - G 74 -7 -4.38712 | overlap 862897 CCGATGTCGACAAAA CGCTCG CCA CGCGCG AGCCGGATCTTGCGG Rfer_0827 864847 - 863465 - | nicotinate phosphoribosyltransferase TERM 805 863830 - 863851 + g 78 -13.7 -3.17219 | overlap 863832 TGCCCTCAGACTGCT TGCGCCGGG CCAG CCCGGCGTA TTCCTGCAGCTTGTA TERM 806 863832 - 863849 + g 78 -14.1 -3.14527 | overlap 863830 CCCTCAGACTGCTTG CGCCGGG CCAG CCCGGCG TATTCCTGCAGCTTG TERM 807 864844 - 864863 + g 74 -6.4 -4.42806 | opp_overlap 864858 GACTGGTGCGCTCCG TCATGGTG ATAC CACCCTGA TTTGTTTCAAGGTCA Rfer_0828 865452 - 864844 - | isochorismatase hydrolase Rfer_0829 867308 - 865566 - | PHP-like Rfer_0830 868418 - 867321 - | heat shock protein DnaJ-like TERM 808 867676 - 867655 - G 75 -7.9 -4.1711 | overlap 867658 ACGACCGCGAACAAA TCACCGGCG ACAC CGCCGGTAT CGGGGCTTGGCATGC Rfer_0831 870860 - 868425 - | ATP-dependent protease, putative TERM 809 870242 - 870254 + g 74 -3.3 -4.78107 | TGATCCGGTCTTTTT CTTCC TGT GGCAG TTTTTCGTACTCGTC Rfer_0832 872758 - 870857 - | heat shock protein 70 TERM 810 871131 - 871145 + g 77 -11.4 -3.66018 | TTGGTCTCTCGCAAG GCGGCT TCG AGCCGC TTCTTCAACTCGTCG Rfer_0833 873353 - 872844 - | heat shock protein Hsp20 TERM 811 873180 - 873205 + g 70 -3.2 -4.63952 | gap 1, opp_overlap 873177 873178, overlap 873173 CCAGCTTGGAAACGC CGCAAGCGCGC TGCCT GCG-GTTGGCG TTTCTTCTTTGTGAT Rfer_0834 873412 - 873693 + | hypothetical protein Rfer_0835 873800 - 874573 + | hypothetical protein TERM 812 874602 - 874617 + T 95 -10.4 -4.61873 | opp_overlap 874602 874599 ACGCATGACACATGA CCTCGC TTCG GCGAGG TTTTCATTTCTGCGG Rfer_0836 875557 - 874703 - | 6-phosphogluconate dehydrogenase, NAD-binding Rfer_0837 876934 - 875636 - | hypothetical protein TERM 813 876149 - 876166 + g 71 -9.1 -3.71848 | opp_overlap 876149 876148 876143 876142 AAGACGAACCAACAG CGCGACG ATTC TGTCGCG TTCTTGCTGGGGCGC TERM 814 876317 - 876275 - G 73 -5 -4.72272 | gap 3, overlap 876277 TTCGGGCACCAAAAA CT-CTGGC-GCGTCA-GCCAG CAAA CTGGCGTAACGCTGCAAGTAG CCACCCTCGCGCAGG TERM 815 877179 - 877202 + H 71 -8 -3.84183 | overlap 877178 TTGCCCGCCTTTGTG CGTCATGCGC CCTT GCGCTTGTCG TCTTTTATCCTGCGC Rfer_0839 877820 - 878236 + | hypothetical protein Rfer_0840 878660 - 879817 + | hypothetical protein Rfer_0841 879814 - 880113 + | hypothetical protein Rfer_0842 880110 - 880811 + | hypothetical protein Rfer_0843 882240 - 881074 - | mandelate racemase/muconate lactonizing enzyme TERM 816 881137 - 881161 + g 75 -8.5 -4.14392 | GAAGCCGATGCCGGG CAGCTCCGGCA AGG TGACGTAGCTG TTTTCGACCTTCACC Rfer_0844 882368 - 883273 + | LysR family transcriptional regulator Rfer_0845 884420 - 883332 - | tartrate dehydrogenase Rfer_0846 884519 - 885232 + | LysR family transcriptional regulator Rfer_0847 885326 - 885832 + | hypothetical protein Rfer_0849 886015 - 886827 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Rfer_0850 886897 - 888195 + | lytic murein transglycosylase Rfer_0851 888399 - 888653 + | hypothetical protein Rfer_0852 888653 - 889444 + | methionine aminopeptidase, type I Rfer_0853 890111 - 889671 - | MerR family transcriptional regulator TERM 817 889792 - 889768 - G 72 -12.1 -3.09516 | opp_overlap 889763 TCCCCGATGACCGAA CCACCCGCGCA GGT CGCACGGATGG CCTGGATTTGCCTCT Rfer_0854 890186 - 892624 + | heavy metal translocating P-type ATPase Rfer_0855 892621 - 892839 + | hypothetical protein Rfer_0856 894225 - 893032 - | major facilitator transporter TERM 818 894095 - 894069 - G 80 -14.5 -3.05463 | gap 1, opp_overlap 894080 894083 894089, overlap 894055 894053 ACCCCGCGTAGTTAA TGGCCGCCAGCC AACC GGCTG-CGGCCA CACCCAGGCCGGCTT TERM 819 894161 - 894149 - G 85 -6.9 -4.7373 | overlap 894150 GGAGTGTAGGAAAAA CGGGC CAC GCCCA GCGCCAGGATCAAGC Rfer_0857 895564 - 894431 - | hypothetical protein TERM 820 894517 - 894477 - G 70 -3.2 -4.68908 | gap 1, overlap 894481 894490 GCCAGCGAAAACAAA CTCAGGCC-CAGAATGC TCAGCCCC GCCATCTGCGGCCAGAG CACGTCCAAGCCAAC Rfer_0858 896704 - 895568 - | hypothetical protein TERM 821 896211 - 896236 + g 74 -11.1 -3.46914 | overlap 896209 GCGCGCACCTCCACC GGCGTGAGCGT CTGC ACGCTGGCGCC TCTTTGCTCGATGGT TERM 822 896290 - 896318 + g 71 -8.7 -3.78034 | opp_overlap 896289, overlap 896287 AGCTGGCGATCACAG CGCTGGCGTAGCC GGC GGCCAGGCTGGCG TTGTTGGTGTCGGTC Rfer_0859 897660 - 896701 - | ABC transporter related Rfer_0860 898607 - 897660 - | ABC transporter related Rfer_0861 899599 - 898607 - | secretion protein HlyD TERM 823 899073 - 899119 + g 95 -16 -3.91984 | gap 1 ACGTCTATGGCTCGC GCCGCTGCGGT-CTGCAGCGA CTGGTC TCGCTGTAGCACCGCACTGGC TTGTTTCAGCGCTGT Rfer_0862 900164 - 899628 - | flavin reductase-like, FMN-binding Rfer_0863 902298 - 900166 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Rfer_0864 902771 - 902295 - | (2Fe-2S)-binding Rfer_0865 903100 - 902777 - | hypothetical protein Rfer_0866 903299 - 904327 + | hypothetical protein Rfer_0867 904336 - 904893 + | hypothetical protein Rfer_0868 906703 - 904970 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 824 905951 - 905983 + g 73 -9.8 -3.6279 | gap 1, opp_overlap 905972 CTGGTGGATGCGGCT GCGCTGCGCGTCGCT CAGG AACGGCGCG-GGCGC TTCTTCCACCAGTTT TERM 825 906162 - 906117 - G 71 -6 -4.37658 | gap 1, opp_overlap 906119, overlap 906119 906120 AACTGTTCCACAAAA CACTCGCCGCGCCCGAACGCC GTGAT GGC-CTCGCGCACGGCGGATT CATACAGCTCGGCCA TERM 826 906159 - 906119 - G 71 -9.7 -3.79419 | gap 2, opp_overlap 906119, overlap 906117 906120 CTGTTCCACAAAACA CTCGCCGCGCCCGAACGCC GTGAT GGC-CTCGCGCACGGCG-G ATTCATACAGCTCGG Rfer_0869 908365 - 906716 - | hypothetical protein TERM 827 907023 - 906999 - G 70 -9.9 -3.53091 | opp_overlap 906996 ACTTCGCCCGCCAAA CGCAGGCCGAC GCG GTTGGACTGCG GTGTCACTTGCCATA TERM 828 907476 - 907488 + g 70 -10.5 -3.53012 | CTGCGCAGGCGCAGG CCGCC GCT GGCGG TTTCCAGGCAGGCGC Rfer_0870 909129 - 908362 - | hypothetical protein Rfer_0871 909845 - 909177 - | pyrrolidone-carboxylate peptidase Rfer_0872 910814 - 909858 - | hypothetical protein TERM 829 910300 - 910354 + g 91 -13.4 -3.76224 | opp_overlap 910265 910262 TGCGGCAGCACCAGG GCCCAGCCCAGGGCGTCCGTCAGGCG GCG CGATTCACGGATGCCTTGCACCGGGC TTTCCTGCGTCAGCC TERM 830 910413 - 910425 + g 81 -7.7 -4.62783 | overlap 910406 GCCGATGCCCAGGCT CACCA GCG TGGTG TTTTTGGGGTCAATC Rfer_0873 911560 - 910817 - | hypothetical protein TERM 831 911733 - 911721 - H 73 -9.1 -3.87994 | ATGTATTGGTATAAA CCCTG ATA CAGGG CGGGATGGCGCTTGA TERM 832 911970 - 911993 + G 76 -6 -4.63527 | opp_overlap 911982, overlap 911971 911972 GCGAGAGCCTGGAGA TTTCGCGCAA TACC TTGCGTGAGG TTTTTCGCATCCTCA Rfer_0874 911834 - 912514 + | GntR family transcriptional regulator Rfer_0875 914509 - 912959 - | hypothetical protein Rfer_0876 914755 - 915027 + | hypothetical protein Rfer_0877 915597 - 914998 - | hypothetical protein TERM 833 915356 - 915323 - G 100 -10.3 -5.01732 | gap 1, overlap 915329 AACTCCCTGAAAAAA TCGAAATTGGCG-GGC AGC GCCTCGCCAAATACGA GGCTCGGAACACCTT TERM 834 915350 - 915329 - G 84 -10.9 -4.05875 | gap 1, overlap 915323 CTGAAAAAATCGAAA TTGGCG-GGC AGC GCCTCGCCAA ATACGAGGCTCGGAA Rfer_0878 916822 - 915638 - | histidine kinase, HAMP protein Rfer_0879 918271 - 917327 - | LysR family transcriptional regulator TERM 835 917553 - 917534 - G 78 -7 -4.72272 | GGTTTCCACCAAAAA GCGTGGCA GCAG CGCCGCGC CCAGACCCGCCACCG TERM 836 917635 - 917676 + g 71 -9.4 -3.83026 | overlap 917638 AAACGCCGTCGGCCC CGACCTGCCCTAGCCAGT CGGCCC ACTGGGTGGGGCGCGTTG TTTGCTGTAGCAACA TERM 837 919555 - 919537 - g 84 -10.2 -4.15788 | overlap 919524 AAGCCCTGGAAGAAA GTCGCGCC CTG GGCGCTAC GGTGCACGGCGGCGC TERM 838 919898 - 919885 - g 74 -3.7 -4.85782 | overlap 919886 919887 GCGGCGAAAAAGAAA CCGGC GGCG GCCGC GAATCGGGCTCTGAC Rfer_0880 918477 - 920009 + | aldehyde dehydrogenase TERM 839 920512 - 920524 + G 70 -3.3 -4.62069 | overlap 920507 GGCCATCACGCCACG CACGC GCT GGGTG TTTTTGAACTCACCC Rfer_0881 920015 - 921223 + | aminotransferase, class I and II Rfer_0882 921249 - 922925 + | acetolactate synthase 2 catalytic subunit TERM 840 922970 - 922953 - T 100 -14.1 -3.79113 | opp_overlap 922953 ACGTTTGCATAAGAA GGCCGCC CGCA GGCGGCC TTGTCAGGTAAGCAA TERM 841 922953 - 922970 + T 95 -14.1 -3.32844 | opp_overlap 922953 ACGTTTGCATAAGAA GGCCGCC CGCA GGCGGCC TTGTCAGGTAAGCAA Rfer_0883 924061 - 922994 - | extracellular solute-binding protein TERM 842 923458 - 923468 + g 75 -2.4 -4.87665 | overlap 923439 GCCAGGCTTTGAAGC CGGG CTC CACG TTTTTGTCAGTGCCA TERM 843 923594 - 923611 + g 91 -7.7 -4.86621 | gap 1, overlap 923594 GAGGTCCATCCAGGA GG-TGGGC GCC GCCCAGCC TTTTTCCTTGAACAT Rfer_0884 925248 - 924115 - | FAD dependent oxidoreductase TERM 844 924572 - 924544 - G 71 -9.6 -3.76482 | CCAGACCATGAAGAA CGGCAACGGC TCGGTCACC GCCATTGCCG GGTGCCTCGCGCAAA Rfer_0885 926639 - 925245 - | BFD-like (2Fe-2S)-binding protein TERM 845 925530 - 925542 + g 76 -9.1 -4.07568 | CAGATCGTCGGGTGC CTGGG CGG CCCAG TTTTGCGGAAACGGG Rfer_0886 926941 - 926636 - | hypothetical protein Rfer_0887 927732 - 926941 - | binding-protein-dependent transport systems inner membrane component Rfer_0888 928592 - 927738 - | binding-protein-dependent transport systems inner membrane component TERM 846 927959 - 927986 + g 72 -12 -3.28791 | gap 1, opp_overlap 927956 927953 927951, overlap 927959 GGCCAAACACGATCA G-GCTGCCCGACA AGA TGCCGGGCAGCAC TTGTGGCAAGACAAT TERM 847 928030 - 928047 + g 89 -12.7 -4.07568 | overlap 928029 GTGAACGGTGAGGCG CGCAGCG ACAG CGCTGCG TTTTCGACGCCCGGG Rfer_0889 929695 - 928589 - | ABC transporter related TERM 848 930222 - 930254 + G 75 -2.6 -4.93296 | gap 1, overlap 930230 930236 TGTGCCGGCCCGTGC TTCTG-CGCCTGTGC GCCA GCCTGGGCGACAGCA TTTTTCTGCTGGTGC Rfer_0890 929900 - 930814 + | IclR family transcriptional regulator Rfer_0891 932550 - 931231 - | metal dependent phosphohydrolase Rfer_0892 933082 - 932585 - | hemerythrin HHE cation binding protein TERM 849 932686 - 932699 + g 71 -8.1 -4.12902 | overlap 932660 ACCGGAAGCCTTCCG GGTCG CGCG CGACC TTTTCCGCCTGGTTC TERM 850 933184 - 933203 + H 76 -5.6 -4.72846 | opp_overlap 933185, overlap 933185 CGGGCATACAAATTC ATGGCGGC GCCA GTCGCCAA TTTTTCACTCTATCC TERM 851 933334 - 933278 - H 80 -10.7 -3.85698 | opp_overlap 933278 CGTGGCTGCGACAAA TCGCGCCAGACACGCAGCCAGTCGCAG GGT CTCCAACTGGCCTCCGACCTGGCCCGA TTGATCGTAGGTACA Rfer_0893 933467 - 934546 + | response regulator receiver sensor signal transduction histidine kinase Rfer_0894 934543 - 935196 + | two component LuxR family transcriptional regulator Rfer_0895 935309 - 937414 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 852 938826 - 938800 - g 81 -5 -4.9218 | overlap 938801 938802 CAGTTACGACAAAAA CCTCCACCCGCC CAT GGCGGAAGAAAA ATTCCTCAAACTCGA Rfer_0896 937478 - 939997 + | signal transduction histidine kinase TERM 853 940408 - 940420 + G 84 -9.1 -4.43501 | GGGCGCTGGGGTTTG TCGGC AAG GCCGA TTTTGTGGCTGAGTT Rfer_0897 940104 - 940499 + | response regulator receiver domain-containing protein Rfer_0898 940496 - 941635 + | methyl-accepting chemotaxis sensory transducer Rfer_0899 941645 - 942013 + | response regulator receiver domain-containing protein TERM 854 942238 - 942217 - g 89 -10.1 -4.63218 | overlap 942219 TGCTGGCCAAGAAAA TGGCGCTGG CCAC CCAGCGCAA GCTGAGCCTGGTAGC Rfer_0900 942030 - 942395 + | anti-sigma-factor antagonist domain-containing protein TERM 855 944128 - 944142 + G 84 -5.6 -4.87291 | overlap 944096 TTGCCGCTCACGCTG GCCATC ATC GACGGC TTTTTGGTTGAAGTG Rfer_0901 942385 - 944547 + | CheA signal transduction histidine kinases TERM 856 944543 - 944553 + F 89 -3.2 -5.59655 | CAAGCGCCTGGGCTG GCTG AAG TAGC TTTTTTATTGATTTA TERM 857 945161 - 945188 + G 76 -6.2 -4.64861 | overlap 945177 TGAGTTCGCCTTCAA GGTGATGGTGAC GCTC GCCACCATGGCC TTTCTTTTCGGCGCG TERM 858 945866 - 945849 - g 70 -4.1 -4.58283 | gap 1, overlap 945850 945851 GAACTGGCTGAAAAA GCCG-GCA AGC TGCTCGAC GAGATCGTGCCGCGC Rfer_0902 944595 - 946247 + | methyl-accepting chemotaxis sensory transducer Rfer_0903 946262 - 946819 + | CheW protein TERM 859 947091 - 947127 + G 73 -10.2 -3.56836 | gap 1 ACTGGTCACTGGGCG GCTGTCCAAACGCCTGG TACA CCAT-CGGTTGGACAGC TTTGGCGAGTACTTT TERM 860 947675 - 947651 - g 71 -5.6 -4.32951 | opp_overlap 947651 947652 947654, overlap 947655 ATTTCAACGAAGAAA CCAAGCGCCA AGTGG TGGCGCGTGT GGTTTCAGCCCTCAA TERM 861 947671 - 947655 - g 71 -9.4 -3.72532 | opp_overlap 947654 947652 947651, overlap 947651 CAACGAAGAAACCAA GCGCCA AGTGG TGGCGC GTGTGGTTTCAGCCC Rfer_0904 946987 - 947790 + | MCP methyltransferase, CheR-type Rfer_0905 947792 - 948313 + | CheD, stimulates methylation of MCP proteins Rfer_0906 948310 - 949365 + | chemotaxis-specific methylesterase Rfer_0907 951069 - 949579 - | EmrB/QacA family drug resistance transporter TERM 862 951106 - 951086 - H 73 -8.9 -3.89346 | CGTCTAGCCTACAAA TCCAGCCGG CAC CCGCCCGGA GTGGTGCAAGCACCC TERM 863 951943 - 951985 + G 77 -11.3 -3.5764 | gap 1, opp_overlap 951950, overlap 951946 AGGCCGAGGTGTTCT CAGGCAAGCGCC-TGACAGC CGAT GCTGTCATGGCGTCCGCTTG TTTGCCGATGGCGTT TERM 864 951946 - 951982 + G 73 -9.4 -3.92542 | gap 1, opp_overlap 951950, overlap 951943 CCGAGGTGTTCTCAG GCAAGCGCC-TGACAGC CGAT GCTGTCATGGCGTCCGC TTGTTTGCCGATGGC Rfer_0908 951429 - 952508 + | patatin Rfer_0909 953297 - 952839 - | hypothetical protein Rfer_0910 954907 - 953987 - | LysR family transcriptional regulator Rfer_0911 955014 - 955778 + | short-chain dehydrogenase/reductase SDR Rfer_0912 956664 - 956098 - | YceI Rfer_0913 957362 - 956724 - | cytochrome c, class I TERM 865 956920 - 956961 + g 89 -15.9 -3.34962 | opp_overlap 956925 956935 TGCGCCTTGGGTCCA TGACACGCCAAGCAAGGAG GCGC CTCCTTGCTTGGCACGCCA TTCTCAAATATCACC TERM 866 956956 - 956925 - G 88 -19.6 -2.78384 | opp_overlap 956920, overlap 956935 CTTGGGTCCATGACA CGCCAAGCAAGGAG GCGC CTCCTTGCTTGGCA CGCCATTCTCAAATA Rfer_0914 958727 - 957390 - | putative cytochrome c1 signal peptide protein TERM 867 958605 - 958629 + g 78 -15.7 -2.55253 | opp_overlap 958588 958585 958611 958612, overlap 958605 958606 TTGCCCGGTTTGTCG GGCAAAGGCCG GCA CGGCCTGTGCC TGCATTGGCATTAAT TERM 868 958623 - 958611 - G 70 -10.5 -3.53012 | opp_overlap 958605 958606 958605, overlap 958585 958612 GGTTTGTCGGGCAAA GGCCG GCA CGGCC TGTGCCTGCATTGGC Rfer_0915 959857 - 960252 + | DoxX TERM 869 960424 - 960374 - T 83 -12.6 -3.27923 | gap 2, opp_overlap 960408 GCGCAATACGATCAA GTCGGTGCGGCGCGATTCGAAGCC CGGGC GGCTTCGCCT-GC-CCGCACCGTC GCGCCGGCGTTACCT Rfer_0916 960891 - 960370 - | hypothetical protein TERM 870 960980 - 960953 - R 100 -15.8 -3.39895 | opp_overlap 960949 CGGTCGATCAATGAA GTCTGCATTGAT AGGC ATCAATGCAGAC CAGCGTCCTGTCAAA Rfer_0917 963341 - 961083 - | penicillin-binding protein 1A TERM 871 962667 - 962693 + g 73 -10.8 -3.5936 | ACCCAGATCGCGCAT GCGCCTCAGCAC CAG GTGTTGGCGCGC TTTGGCACCTTTGGG Rfer_0919 964441 - 965469 + | glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) TERM 872 966310 - 966325 + T 71 -10.4 -3.27525 | overlap 966305 CGCTGGTATGGTTGG CGCTGG CTTG CCAGCG TTCACTTTCCGAGCA Rfer_0920 967571 - 966327 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 873 966818 - 966858 + g 70 -10.5 -3.51825 | CGTCAACGGTGGGAT CGGTGTAGAGCAGGGCA TTGCGGT TGCCTTGCTTGATACCG TTGTACTTGAACTCG TERM 874 967367 - 967402 + g 72 -14 -2.62184 | gap 1 CCATCAGCAGCCATG CCTTGGCGGGCAAGGCC GGC GGGCT-GCCCGCCAACG TGGTCTGAGCAGCAA TERM 875 967431 - 967449 + g 72 -2.2 -4.82901 | overlap 967433 967440 AAGTGGCGGCGGGGT GTTCTCGG TGG CCGCGGCC TTTTTGTGAGGCGCG Rfer_0921 968820 - 968221 - | two component LuxR family transcriptional regulator TERM 876 968463 - 968475 + g 71 -7.7 -4.0371 | CCTGCGCCTCGACCA TTGCC AGT GGCAA TTTCTCTAGCAACTG Rfer_0922 971000 - 968817 - | multi-sensor signal transduction histidine kinase TERM 877 969019 - 968986 - G 93 -14.5 -3.72695 | ACCTGGGCGAGCAAA GCCTCGGGGACGCCA GGGC CGGCGTCCCCGACCC GAATCTGGACGGTAC TERM 878 970484 - 970471 - G 85 -3.7 -5.37593 | overlap 970472 970473 TCGGAAATGAAAAAA CCCGG CGTG CCGGT GGTCAGACCGACGCC Rfer_0923 971155 - 972624 + | anion transporter Rfer_0924 972858 - 973382 + | CheW protein TERM 879 973640 - 973628 - g 73 -4.8 -4.62783 | CAGCGATTGCAAAAA GCAG TGACC CTGC CCTGGTGTCTTTTTT TERM 880 974463 - 974449 - g 76 -10 -3.81951 | overlap 974458 GTCGAGACCATGAAA GGCATC AAC GATGCC TCCAGAAAGATCTCG Rfer_0925 973402 - 975060 + | methyl-accepting chemotaxis sensory transducer Rfer_0926 975082 - 975336 + | hypothetical protein Rfer_0927 977120 - 975621 - | N-acyl-D-amino-acid deacylase TERM 881 976562 - 976547 - G 89 -4.6 -5.24129 | opp_overlap 976555, overlap 976559 CCTGTTCATAAAAAA GACCCG ACGA CAGGCC CGCCGCGCCGTCTTC Rfer_0928 978049 - 977117 - | RpiR family transcriptional regulator TERM 882 977532 - 977506 - G 79 -12.3 -3.43919 | gap 1, overlap 977504 GCGAAATGGCAAACA CCACG-CCCTGG GTGC CCAGGGTCGCGG CCGACACCAGTTGCA Rfer_0929 979402 - 978104 - | D-serine deaminase Rfer_0930 980407 - 979439 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 883 979588 - 979562 - G 71 -8.7 -3.73224 | gap 1, overlap 979564 GCAGCGGGTACGAAA CACG-CAACCCG AAGG CGGGTTGACGGG GCTGGGAATGTCGCC TERM 884 979586 - 979564 - G 70 -9.9 -3.45027 | gap 1, overlap 979562 AGCGGGTACGAAACA CG-CAACCCG AAGG CGGGTTGACG GGGCTGGGAATGTCG TERM 885 979604 - 979625 + g 79 -8.7 -4.26076 | gap 1, overlap 979605 GCTGGGAATGTCGCC G-GTGAGCGC AAT GCGCTCGCTC TTTTGCTCGGGGTCG TERM 886 979605 - 979623 + g 85 -12.4 -3.7331 | overlap 979604 CTGGGAATGTCGCCG GTGAGCGC AAT GCGCTCGC TCTTTTGCTCGGGGT Rfer_0931 981468 - 980404 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like Rfer_0932 982318 - 981479 - | binding-protein-dependent transport systems inner membrane component TERM 887 981801 - 981772 - G 71 -5.5 -4.3739 | overlap 981773 TATGCCGCCACAAAA TGCGGGCAGTTGA CACG CCCACGGCCCGCG CCGCCTCCACAAACA Rfer_0933 983264 - 982323 - | binding-protein-dependent transport systems inner membrane component Rfer_0934 985011 - 983398 - | twin-arginine translocation pathway signal TERM 888 984060 - 984079 + g 71 -7.1 -4.1891 | CTTTGCGCAAGGGCT GGGAGGC CATCAC GCCTTCC TTTGTATTGAACACA TERM 889 985548 - 985503 - g 100 -7.6 -5.24129 | gap 2, overlap 985506 985507 TTCGGCGACAAAAAA CCAGCGCGCTCCACCACCGAGG CGCG CCT-GATGGTGGAT-GCACGGG TTGAGATTGATGTGG Rfer_0935 985194 - 985586 + | YjgF-like protein Rfer_0936 985848 - 986774 + | PfkB Rfer_0937 986810 - 987700 + | 2-dehydro-3-deoxygalactonokinase Rfer_0938 987697 - 988332 + | KDPG and KHG aldolase Rfer_0940 989158 - 990360 + | pyridoxal phosphate-dependent enzyme, putative Rfer_0941 990898 - 991716 + | 2-dehydro-3-deoxyglucarate aldolase TERM 890 991902 - 991924 + T 76 -11.9 -3.14564 | CGGCAACGCGGTATG GCCGCCGCC AACTG GGCGGCAGC TTGGTGGAAAGCTAA TERM 891 992341 - 992358 + T 71 -8.3 -3.90318 | overlap 992331 992342 CATTTGGTCTGCTGG GCGGGCC TATT GGCCCGA TTTCTCGCCTCATGG TERM 892 992342 - 992357 + T 75 -11.8 -2.93869 | overlap 992331 992341 ATTTGGTCTGCTGGG CGGGCC TATT GGCCCG ATTTCTCGCCTCATG Rfer_0942 993336 - 992368 - | transposase, IS4 TERM 893 992422 - 992449 + g 71 -7 -4.17048 | gap 1, opp_overlap 992413, overlap 992434 GTAAATGTTGGCCAA CGCCAATGCGG TGAACGC CCGCGT-GGCG TTCTTTTGAAGACCA TERM 894 992434 - 992452 + g 80 -10.3 -4.07568 | overlap 992422 CAACGCCAATGCGGT GAACGCC CGCGT GGCGTTC TTTTGAAGACCACGA Rfer_0943 993425 - 993763 + | putative thioredoxin Rfer_0944 993879 - 994565 + | hypothetical protein Rfer_0945 994819 - 995451 + | hypothetical protein TERM 895 995769 - 995790 + T 72 -3.8 -4.71061 | gap 1 GGGCCTGTTGCCCCA TTGCTGTCG GTAAG CGA-AGCAA TTTTTCAATATCGGT Rfer_0946 996145 - 995861 - | hypothetical protein Rfer_0947 997277 - 996231 - | mannonate dehydratase TERM 896 996847 - 996860 + g 70 -3.8 -4.60041 | overlap 996835 CTGGCGTCCCAGCCG GGCA GGGCGA TGCC TTTTTCCGGATCAAT TERM 897 997741 - 997762 + H 71 -10.9 -3.26649 | opp_overlap 997718 997738 CCGTCAGAGAAACTC CGCAGTGCT GGTC AGTACTGCG TTGGTGTACCGGTGT TERM 898 998610 - 998590 - g 77 -11.1 -3.59979 | opp_overlap 998590 TCCTGGTACCTCAAA CCCCGGC CGGACGT GCCGGGG TGCTGTCGACCATCT Rfer_0949 997863 - 998918 + | 2-keto-3-deoxy-galactonokinase Rfer_0950 998931 - 999566 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Rfer_0951 999624 - 1000772 + | mandelate racemase/muconate lactonizing enzyme Rfer_0952 1001748 - 1000933 - | binding-protein-dependent transport systems inner membrane component Rfer_0953 1002637 - 1001759 - | binding-protein-dependent transport systems inner membrane component Rfer_0954 1003992 - 1002799 - | extracellular solute-binding protein Rfer_0955 1005128 - 1004031 - | ABC transporter related TERM 899 1004444 - 1004410 - G 84 -10.8 -4.15044 | overlap 1004395 1004433 CGGGCGTCGAAGAAA TTCATCGCCGGC GAGCCGATGAA GCCGGCGACGAA ACGGTTGACCGGCTG Rfer_0956 1005999 - 1005430 - | carbohydrate kinase, thermoresistant glucokinase TERM 900 1006728 - 1006744 + G 78 -13.7 -3.17714 | opp_overlap 1006707 GGGATTTTCCCAGCG CGACGCG GCA CGCGTCG TTACTCAACATTTGA Rfer_0957 1006210 - 1007244 + | LacI family transcription regulator TERM 901 1009507 - 1009464 - g 100 -29.8 -4.07568 | gap 1 TGCTGGGCGCCAAAA CG-CTGGCGGACCGCCAAGTG CGC CACCTGGCGGTCCGCCAGACG GCGGACTGAACCTCC Rfer_0959 1007924 - 1009516 + | radical SAM family protein TERM 902 1009639 - 1009627 - f 74 -4.8 -4.82154 | overlap 1009629 AATCGACATCAAAAA TGGC AAGCG GCCA CCCGAGCCACACGCT Rfer_0960 1010162 - 1011307 + | major facilitator transporter Rfer_0961 1012530 - 1011895 - | KDPG and KHG aldolase Rfer_0962 1013417 - 1012527 - | 2-dehydro-3-deoxygalactonokinase Rfer_0963 1014379 - 1013453 - | PfkB TERM 903 1014618 - 1014603 - R 84 -9 -4.32482 | ACCTAGAAGTCAAAA CGCAGT ATTT ACTGCG CCCGTCACTGACAAG Rfer_0964 1015868 - 1014597 - | D-serine deaminase TERM 904 1016015 - 1016029 + H 74 -2.1 -4.99947 | overlap 1016016 1016018 ATGAAGTGAAGGGCG TGTGA AAATG TCACG TTTTCTTTACTTGCC Rfer_0965 1016453 - 1017295 + | extracellular solute-binding protein Rfer_0966 1017422 - 1018084 + | amino acid ABC transporter permease Rfer_0967 1018090 - 1018758 + | amino acid ABC transporter permease TERM 905 1019037 - 1019027 - g 71 -5.4 -4.30827 | AAAATGAAAAGGAAA TTGC TAA GCAA CGTGCACTTACCGGC Rfer_0968 1018771 - 1019541 + | ABC transporter related Rfer_0969 1019560 - 1019961 + | endoribonuclease L-PSP Rfer_0970 1020016 - 1020792 + | IclR family transcriptional regulator Rfer_0971 1021602 - 1021928 + | hypothetical protein TERM 906 1022844 - 1022858 + G 73 -4.2 -4.62069 | overlap 1022832 1022844 TGGGTCGCCGGCTGT TGGCGG CCG TTGCCA TTTTTGGCGTGGCCA Rfer_0972 1021985 - 1023211 + | major facilitator transporter Rfer_0973 1023253 - 1023618 + | hypothetical protein Rfer_0974 1023985 - 1024407 + | phenylacetic acid degradation-related protein TERM 907 1024523 - 1024536 + T 77 -8.1 -4.19735 | AAATTTTTAGAAGCT GAGCG TTGC CGCTC TTTCATTTTCAACAA Rfer_0975 1024906 - 1024514 - | hypothetical protein Rfer_0976 1025998 - 1025027 - | ornithine cyclodeaminase TERM 908 1025896 - 1025926 + g 89 -10.5 -4.60041 | gap 2, overlap 1025899 CGACAGGGTAATTGC GCGCTTCGCCGCGCG CCA TG-GCGGCGAAG-GC TTTTTCGACCTCGGT Rfer_0977 1027158 - 1026019 - | alanine racemase-like TERM 909 1026861 - 1026883 + g 73 -9.8 -3.68073 | GGACCCCCTTGTCCT GCAGGGCCAT CAC ATGGTCCAGC TTGTTCGGTGCGATG Rfer_0978 1028626 - 1027160 - | N-acyl-D-amino-acid deacylase TERM 910 1027779 - 1027808 + g 91 -5 -5.47218 | gap 1, opp_overlap 1027781, overlap 1027781 GCAGTGTAGGGATAG CA-GTCCAGGCAG ATCGG CTGCTTGGCCATG TTTTTTTCGATGAAG Rfer_0979 1029557 - 1028610 - | 6-phosphogluconate dehydrogenase, NAD-binding TERM 911 1029453 - 1029491 + g 72 -11 -3.33744 | opp_overlap 1029461, overlap 1029454 1029479 CGGCTGGTTGCCTGG ATGATCAAGCAGGGTCAT GGC GTGCCCCTGCTTGAGCAG GTTTTTCGCCAAGCC TERM 912 1029454 - 1029490 + g 76 -14.5 -2.60032 | opp_overlap 1029461, overlap 1029453 1029479 GGCTGGTTGCCTGGA TGATCAAGCAGGGTCAT GGC GTGCCCCTGCTTGAGCA GGTTTTTCGCCAAGC TERM 913 1029479 - 1029492 + g 79 -8.1 -4.56597 | opp_overlap 1029461, overlap 1029454 1029453 GGGTCATGGCGTGCC CCTGC TTGA GCAGG TTTTTCGCCAAGCCA Rfer_0980 1030351 - 1029587 - | class II aldolase/adducin-like TERM 914 1030092 - 1030080 - G 73 -10.5 -3.58269 | overlap 1030088 GAATGGATGTTGAAA GCGGC AAA GCCGC CATCGCGCCCGCCGC Rfer_0981 1031327 - 1030341 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like Rfer_0982 1032328 - 1031324 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like Rfer_0983 1033176 - 1032325 - | binding-protein-dependent transport systems inner membrane component Rfer_0984 1034114 - 1033173 - | binding-protein-dependent transport systems inner membrane component Rfer_0985 1035710 - 1034175 - | extracellular solute-binding protein TERM 915 1034382 - 1034393 + g 74 -3.6 -4.72986 | GTACAGGCGATCGAT CTCG GCGT CGGG TTTTTGGTGGAGCTG TERM 916 1034658 - 1034673 + g 73 -4.6 -4.62069 | overlap 1034660 1034666 1034667 GTAGCCCGATTTCAC GACCAG CTCC CTGGCC TTTTTCAGGTCGGGC TERM 917 1034914 - 1034931 + g 74 -4.1 -4.7497 | gap 1, overlap 1034915 TAGATCTTGAAGGCC G-GGTTGG TCT CCAGCCTC TTTTTGGTCGGTCCG Rfer_0986 1037279 - 1035834 - | betaine-aldehyde dehydrogenase TERM 918 1036558 - 1036538 - G 77 -14.7 -2.75712 | overlap 1036535 TCACGCAGGGAATTA CGCGCTCGG CGG CCGAGCGCA GCACGCTCTTGCCGG Rfer_0987 1037433 - 1038353 + | LysR family transcriptional regulator Rfer_0988 1038614 - 1038444 - | IS1327 transposase Rfer_0989 1040082 - 1038670 - | amidase Rfer_0990 1042651 - 1041023 - | methyl-accepting chemotaxis sensory transducer TERM 919 1042349 - 1042361 + g 73 -4.8 -4.61868 | GCTGTCCTGCACCTT GGCT AGAAA AGCC TTTTGTGTCTCGGTC TERM 920 1042608 - 1042594 - G 100 -7.8 -5.29716 | CCAACAGAAGAAAAA CCGCGA TGA TCACGG CAAAACCAAGAGCGA Rfer_0991 1043189 - 1042665 - | CheW protein TERM 921 1042810 - 1042796 - G 71 -7 -4.16016 | opp_overlap 1042795 1042793 1042796 TGACGGCTGAAGAAA GCTCGG GCA CCGGGC GTATTTGCTCAGGTT TERM 922 1043957 - 1043943 - R 74 -10 -3.72678 | overlap 1043950 CAAACACCAGCCAAA GAACCC AGC GGGTTC AGCAGTGTCACTTCT Rfer_0992 1044612 - 1043965 - | hypothetical protein TERM 923 1045034 - 1045019 - H 72 -11.8 -2.76261 | overlap 1045018 GGGTAAGGGCCAAAC CCCCGG CAGG CCGGGG CTCGAAGTGCAACTT Rfer_0993 1045150 - 1046238 + | L-carnitine dehydratase/bile acid-inducible protein F Rfer_0994 1046280 - 1047428 + | acyl-CoA dehydrogenase-like Rfer_0995 1047461 - 1048252 + | enoyl-CoA hydratase/isomerase TERM 924 1048273 - 1048259 - T 70 -7 -4.21933 | overlap 1048263 GGAACCTGAAAAGAA CGCACG CAG CGGGCG CATACCCGCAGTGAA Rfer_0996 1051082 - 1048290 - | ATP-dependent transcription regulator LuxR TERM 925 1048792 - 1048808 + g 73 -5 -4.65933 | overlap 1048794 AGGCGACGGTGGCGA CCGGCC TCGGC GGCCCG TTTCTTTTCAGCATC TERM 926 1051812 - 1051852 + G 77 -7.6 -4.36914 | gap 2, overlap 1051813 GCCTACGCCTCCGAC TTCAGCCTGCTGTTGGTCGC CAT GCGGCC-GCA-CGGGCTGAC TTTTATGCAGCCCCA Rfer_0997 1051173 - 1052060 + | palmitoyl-CoA hydrolase TERM 927 1052079 - 1052120 + F 74 -4.2 -4.77157 | gap 1, overlap 1052080 CCCAGTTTTGCCATT TCGTGTGCTGCGCTGCCCC ACAAG GGGGCGGC-CTGCGACCGG TTTTTCGTCGCTTCG TERM 928 1052504 - 1052477 - g 72 -12.7 -3.03159 | GCAACGCCGTCAAGA CCGCCGGTCGC GACAAG ACGACCGGCGA TATCAAGCACTACCC Rfer_0998 1052197 - 1052979 + | short-chain dehydrogenase/reductase SDR TERM 929 1052999 - 1053022 + F 80 -8.8 -4.07568 | gap 1, overlap 1053003 GTCAACTTTTGTAGT TGGA-CCGGGC TAT GCCCGGTTCCC TTTTCACCGCCCGAG TERM 930 1053003 - 1053017 + F 84 -12.8 -3.36823 | overlap 1052999 ACTTTTGTAGTTGGA CCGGGC TAT GCCCGG TTCCCTTTTCACCGC TERM 931 1054480 - 1054433 - g 87 -10.4 -4.33621 | opp_overlap 1054435 CATTCAAGGAAGAAA TCCTGCCGGTGGCCGTGCGTTC GCCC GAAGGCGTGGACACCGGCGAGA TGCACATGGTGGACG Rfer_1000 1053844 - 1055022 + | acetyl-CoA acetyltransferase Rfer_1001 1055044 - 1055850 + | ABC transporter related Rfer_1002 1055847 - 1056563 + | ABC transporter related Rfer_1003 1056576 - 1057448 + | inner-membrane translocator Rfer_1004 1057452 - 1058453 + | inner-membrane translocator Rfer_1005 1058593 - 1059816 + | extracellular ligand-binding receptor TERM 932 1060833 - 1060858 + G 73 -13.3 -2.75229 | gap 1, overlap 1060824 1060822 CAAGCGGATCGGCAT TGGCGGCGCGGC CGT GTCGCGC-GCCA TGCTTGAGCGTTTTG TERM 933 1061106 - 1061123 + G 71 -6.9 -4.17048 | overlap 1061097 CCTGCTGGTGCGTGG CCCCTGG ATTG CCAGCGG TTATTTTAGGGACGA Rfer_1006 1059922 - 1061562 + | AMP-dependent synthetase and ligase Rfer_1007 1061696 - 1062526 + | enoyl-CoA hydratase/isomerase TERM 934 1062968 - 1062994 + G 82 -12.3 -3.64822 | TCGGCCGAGCGCAAT GGCGTCGATGC GGTGA GCATCGACGGC TTTGAGTGCGCAGGT Rfer_1008 1062566 - 1063537 + | 2-nitropropane dioxygenase, NPD TERM 935 1063794 - 1063808 + G 74 -7.1 -4.4017 | GCGCTTGTCGTGACC GGCTC TGGAC GAGCC TTTTGTGCAGGTTGG Rfer_1009 1063632 - 1064438 + | enoyl-CoA hydratase/isomerase Rfer_1010 1064435 - 1065313 + | enoyl-CoA hydratase TERM 936 1065553 - 1065568 + F 73 -6.2 -4.38927 | opp_overlap 1065553 TTCAAAAGTCGAATA GTTACT CAGA AGTAAC TTTCTTGTGTCAGAG Rfer_1011 1065637 - 1067949 + | TetR family transcriptional regulator Rfer_1012 1068094 - 1069410 + | extracellular ligand-binding receptor TERM 937 1069589 - 1069646 + G 84 -10.4 -4.21194 | opp_overlap 1069561 CGTGTATGCCATCGG GGCCTACGCTGCGGCCACG-GCCGTGGC TTTG GCCGCGGCGCTTGGCC-TGCCGCCGGCC TTTTCCCTCGTCGCC Rfer_1013 1069452 - 1070348 + | inner-membrane translocator TERM 938 1070578 - 1070600 + G 72 -2.6 -4.82901 | overlap 1070580 1070581 1070588 GCCGACGCTGTTGGG CGTGCAGGAT GCA GTCCTGCGTA TTTTTCTCGGGACGC TERM 939 1070961 - 1070977 + G 74 -10.9 -3.49618 | overlap 1070957 GTGCCTCGGCCCGCC GCTCGTT GGG AACGAGC TTCGTTATCTGCGCC Rfer_1014 1070348 - 1071331 + | inner-membrane translocator Rfer_1015 1071328 - 1072077 + | ABC transporter related Rfer_1016 1072074 - 1072748 + | ABC transporter related TERM 940 1072997 - 1073025 + G 93 -10.9 -4.3898 | overlap 1072999 GTGCCGGGCGACCGG GCCGCGCTGGTGC TCG GCAATAGCGCGTC TTTTGTAACGATCAT TERM 941 1072999 - 1073023 + G 85 -12.1 -3.80133 | overlap 1072997 GCCGGGCGACCGGGC CGCGCTGGTGC TCG GCAATAGCGCG TCTTTTGTAACGATC TERM 942 1073697 - 1073655 - g 72 -12.7 -3.01712 | gap 1 GCCCCGCGCTCAAGA GCTGGCG-CCTCGGTGCG TATGGTGG CGCTCCGATGCCGCCAGC GACCATCGAGGCCCT Rfer_1017 1072745 - 1074403 + | O-succinylbenzoate--CoA ligase Rfer_1018 1074400 - 1075476 + | aminoglycoside phosphotransferase Rfer_1019 1075497 - 1076750 + | acyl-CoA dehydrogenase-like Rfer_1020 1076800 - 1077192 + | hypothetical protein TERM 943 1077239 - 1077222 - T 80 -9.9 -4.04188 | opp_overlap 1077216 1077222 ATTTAAAGAGAAGAA CTTGCGA GACC TCGCAAG TGTCTGCTTGATTGA Rfer_1021 1080545 - 1077390 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 944 1079723 - 1079701 - G 71 -8.5 -4.08767 | gap 1, opp_overlap 1079692 TTGATCGGGGCAAAA GCCTCTGCTG TGGG CAGCA-AGGC GATAGCGACCCAGCC Rfer_1022 1080906 - 1081232 + | hypothetical protein TERM 945 1082148 - 1082162 + G 73 -4.2 -4.62069 | overlap 1082136 1082148 TGGGTCGCCGGCTGT TGGCGG CCG TTGCCA TTTTTGGCGTGGCCA Rfer_1023 1081289 - 1082515 + | major facilitator transporter TERM 946 1082584 - 1082600 + T 75 -6.5 -4.52589 | opp_overlap 1082575 AACAGACTGCATCAT CCGATGC AAT GGATCGG TTTTCTCTGCGCGAC TERM 947 1082651 - 1082636 - T 93 -11.8 -4.36914 | CCTGTGTTCATAAAA GCGGGC TCTC GCCCGC TGATCGCGCAAGCAA Rfer_1025 1085558 - 1084116 - | aldehyde dehydrogenase Rfer_1026 1086514 - 1085585 - | dihydrodipicolinate synthetase TERM 948 1085739 - 1085750 + g 74 -7.2 -4.36411 | overlap 1085738 1085720 TTGGCGCTCAGGATG CCGC CCTG GCGG TTTTCATAGTTGATC Rfer_1027 1088110 - 1086581 - | galactarate dehydratase Rfer_1028 1089045 - 1088167 - | 6-phosphogluconate dehydrogenase, NAD-binding Rfer_1029 1089896 - 1089099 - | extracellular solute-binding protein Rfer_1030 1090625 - 1089906 - | ABC transporter related TERM 949 1090463 - 1090477 + g 75 -2.9 -5.00884 | TTTCGCAGACCCGGA TAGAT CCAGA ATCTA TTTTTTCCAGACCAT Rfer_1031 1091271 - 1090627 - | amino acid ABC transporter permease Rfer_1032 1091966 - 1091283 - | amino acid ABC transporter permease TERM 950 1092570 - 1092559 - g 76 -5.8 -4.60889 | AACCAGTGCGAAAAA CCCA TGGC TGGG AGTCCATTTACGAAG TERM 951 1092988 - 1092966 - g 89 -12.1 -4.08064 | AAGCTTTTGTCAAAA TGCAGCAAC GAGGA GTTGCTGCA AGGCTTAACTCGAAC Rfer_1033 1092213 - 1093238 + | GntR family transcriptional regulator Rfer_1034 1095138 - 1093936 - | Beta-ketoadipyl CoA thiolase Rfer_1035 1095801 - 1095160 - | 3-oxoacid CoA-transferase, subunit B Rfer_1036 1096504 - 1095803 - | 3-oxoacid CoA-transferase, subunit A Rfer_1037 1097418 - 1096537 - | aminotransferase, class IV TERM 952 1096992 - 1096969 - G 77 -11 -3.64703 | opp_overlap 1096983 CTTTTCCCAGCGAAA GTCGTCTGCG GTGA CGCAGACCAC GCCCTGGCTGCGTTG Rfer_1038 1098128 - 1097445 - | Asp/Glu racemase Rfer_1039 1100729 - 1098132 - | TRAP transporter, 4TM/12TM fusion protein TERM 953 1100431 - 1100396 - G 83 -2.3 -5.28983 | overlap 1100398 1100400 GGTAAAAGAGAAAAA TATAGGCGGCGCAGA AGGCGG CCAGCGCCGCCAGGA CCCAATCTACCGAAG TERM 954 1100428 - 1100398 - G 71 -6.8 -4.25747 | gap 1, overlap 1100396 1100400 TAAAAGAGAAAAATA TAGGCGGCGCAGA AGGCGG CCAGCGCCGCC-A GGACCCAATCTACCG TERM 955 1100427 - 1100400 - G 77 -11.9 -3.68047 | overlap 1100398 1100396 AAAGAGAAAAATATA GGCGGCGCAGA AGGCGG CCAGCGCCGCC AGGACCCAATCTACC TERM 956 1100566 - 1100556 - G 88 -3.2 -5.55769 | GTTGAGAACAAAAAA TCGC AAT GCAA ACGGCAGCGGCGATG Rfer_1040 1101753 - 1100779 - | TRAP transporter solute receptor TAXI family protein Rfer_1041 1103124 - 1101784 - | hypothetical protein TERM 957 1101951 - 1101995 + g 76 -9.4 -4.09864 | overlap 1101952 CGCGGGCCATGGCTT C-CTGTTTGATGCGGGCGTGCA GTC TGCGCGCCGG-GTCAAACGGTG TTTTGAGACCTCGGT TERM 958 1101952 - 1101993 + g 82 -13.1 -3.64716 | gap 1, overlap 1101951 GCGGGCCATGGCTTC CTGTTTGATGCGGGCGTGCA GTC TGCGCGCCGG-GTCAAACGG TGTTTTGAGACCTCG TERM 959 1102123 - 1102109 - G 78 -2.8 -5.03747 | AAATTCTGTAAAAAA TCGC CACGTGC GCGA ACTTGCGCCATCAAA Rfer_1042 1104035 - 1103130 - | RpiR family transcriptional regulator TERM 960 1104454 - 1104431 - R 71 -4.5 -4.67982 | CGTCAGCCAAGAAAA CAGGCGTCC TCGGTT GAACGACTG CTCCCGAGTTTCAGG Rfer_1043 1104794 - 1104465 - | hypothetical protein Rfer_1045 1105658 - 1106251 + | hypothetical protein TERM 961 1106378 - 1106398 + F 70 -9 -3.65902 | CCTCAATGGCGGCAA TGGGCACC AAGCG GGTGTCCA TTTCGGTCGGATACC TERM 962 1107057 - 1107002 - f 100 -25.2 -4.07246 | opp_overlap 1106997 1107006 1107009 1107024, overlap 1106997 1107023 CCACCTCAAAGCAAA TTGACAATTTCTGACAGGGAATTGTC AATT GACATTTACCTGTCAGAAATTGTCAA TTGACAGGCAATCGA TERM 963 1107006 - 1107053 + F 100 -20.2 -2.52464 | opp_overlap 1106997 1107002 1107023, overlap 1106997 1107009 1107024 CTCAAAGCAAATTGA CAATTTCTGACAGGGAATTGTC AATT GACATTTACCTGTCAGAAATTG TCAATTGACAGGCAA TERM 964 1107009 - 1107050 + F 100 -16.1 -3.41878 | opp_overlap 1106997 1107002 1107023, overlap 1106997 1107006 1107024 AAAGCAAATTGACAA TTTCTGACAGGGAATTGTC AATT GACATTTACCTGTCAGAAA TTGTCAATTGACAGG Rfer_1046 1107086 - 1107919 + | hypothetical protein TERM 965 1108697 - 1108709 + G 73 -9.1 -3.87373 | GACCGGCGTGCTTGG CGTCG GAA CGACG TTTATGACGGATATC Rfer_1047 1108494 - 1109777 + | hypothetical protein TERM 966 1109803 - 1109826 + F 86 -12.4 -3.85698 | opp_overlap 1109799 ACTTGACACCACGCA GAGGCCTCGC TGAT GCGAGGACTC TTTGTGGGCGCCGAC TERM 967 1110870 - 1110880 + G 76 -5.4 -4.66938 | CAAAACGTACTGGCC GATG AGG CATC TTTTGTCTTGGAGCT TERM 968 1111168 - 1111112 - g 86 -13.6 -3.4252 | gap 2 CGGCAGTCATGACAA CCGCCCGGTCGCGGCCCGCATCATGGCG CTA CGCCAGGA-GCAGGCCGCT-CTGCACGG GTACGCCAGTTATGC Rfer_1048 1110315 - 1112378 + | peptidyl-dipeptidase Dcp Rfer_1049 1113382 - 1112552 - | hypothetical protein TERM 969 1113330 - 1113343 + g 73 -4.5 -4.67011 | gap 1, opp_overlap 1113330, overlap 1113330 1113331 TCATTGGCTGTAAAC G-CGGC GGC GCCGAC TTTTTGAATGGCGTT Rfer_1050 1114187 - 1113648 - | hypothetical protein Rfer_1051 1114894 - 1114202 - | hypothetical protein Rfer_1052 1116414 - 1115422 - | hypothetical protein TERM 970 1115649 - 1115672 + g 84 -10.2 -4.2123 | overlap 1115648 CATCCTCGTCCAGTT GCAGAGCTGC ATTT GCGGCGCTGC TTTGTTGGATCCATC Rfer_1053 1118006 - 1116648 - | hypothetical protein Rfer_1054 1120045 - 1118003 - | hypothetical protein TERM 971 1118782 - 1118794 + g 75 -7.7 -4.20707 | overlap 1118773 1118773 GATAGCTGGGGGCGC CCGAT TTG ATCGG TATTTTTTCCTCAAG Rfer_1055 1121090 - 1120047 - | transposase, TnsA-related protein TERM 972 1121155 - 1121139 - H 84 -13.7 -3.0806 | opp_overlap 1121139 CTGAAAGCCCTAAGA CGCCAGC CCT GCTGGCG TTTTTTGTTTGGAGA TERM 973 1121139 - 1121155 + H 100 -13.7 -5.63517 | opp_overlap 1121139 CTGAAAGCCCTAAGA CGCCAGC CCT GCTGGCG TTTTTTGTTTGGAGA TERM 974 1121291 - 1121308 + H 100 -9.1 -5.09521 | GAGCGACAGACCTAT GCCAGCG TTTA TGCTGGC TTTTTCATTTCTTGA TERM 975 1121462 - 1121480 + H 77 -7.4 -4.24326 | opp_overlap 1121465, overlap 1121465 CCTCCCAATCATGAT GAAGGAAG GAC CTTCCTGC TTTTCAATGATGTTT Rfer_1056 1121704 - 1122960 + | hypothetical protein TERM 976 1123332 - 1123347 + G 84 -4 -5.28942 | gap 1, overlap 1123313 ATAGTGTCATCCGTG GGCA-CA CTC TGCTGCC TTTTTATTTGCCCTA Rfer_1057 1123250 - 1124821 + | hypothetical protein Rfer_1058 1126254 - 1124818 - | hypothetical protein TERM 977 1125159 - 1125188 + g 93 -5.8 -5.45652 | gap 1 TGGAAGCACCCACGT TGTGCAACGATGG CATGC CCAGCGTTG-ACA TTTTTTCTTGCAGGT TERM 978 1127378 - 1127391 + G 74 -3.7 -4.7497 | TTTGCGACCCGGCGA GCGGC ACCT GCGGC TTTTTGGTGGCTACC Rfer_1059 1126795 - 1128345 + | N-6 DNA methylase TERM 979 1128541 - 1128558 + G 77 -7.7 -4.42639 | opp_overlap 1128541 AGAGCAGTATCAAAT TGGTTCC AGCC GGAGCCA TTTTGCTTGCAATGT Rfer_1060 1128342 - 1129535 + | restriction modification system DNA specificity subunit Rfer_1061 1129538 - 1131265 + | hypothetical protein TERM 980 1132220 - 1132233 + G 70 -5.2 -4.56597 | CCAGCTATCCGCCAC GCCC GGTTCA GGGC TTTTTCAAGAAGCAG TERM 981 1132653 - 1132664 + G 71 -7.2 -4.19238 | TGACGATGCGGCTGA CGGC CAGC GCCG TTTTGGCGTTGGGCA TERM 982 1133121 - 1133107 - g 76 -5.6 -4.60041 | overlap 1133109 AGCCAGGGTGAAAAA GTGGCC GGT GGCGAC CGCCTGGGTAAAACC TERM 983 1133408 - 1133433 + G 74 -11.1 -3.54475 | opp_overlap 1133405 TCTGGCAGATGATTG GCCGAGGCACG CGCT TGTGCCTCGAC TTGTATGGTCCGGGA TERM 984 1133434 - 1133460 + G 72 -2.2 -4.74453 | opp_overlap 1133405 CGCTTGTGCCTCGAC TTGTATGGTCCG GGA CAGAACAAACAA TTTTTCAATGTCTTC Rfer_1062 1131262 - 1134678 + | type III restriction enzyme, res subunit TERM 985 1134901 - 1134882 - T 72 -12.2 -2.74144 | overlap 1134881 GCCCCATCTTCAAAG TGGTCGTC GCGT GACGACCA GAACCGGGTAATCGC TERM 986 1134956 - 1134945 - T 72 -2.2 -4.98255 | CGGGAACTAGAAAAA CCGA TGGA TCAG GCTTCCAGCCTGCTG Rfer_1063 1136206 - 1135163 - | thymidylate synthase TERM 987 1136420 - 1136439 + r 70 -2.8 -4.74052 | opp_overlap 1136404 ATCATTCCAAACAAC GAACGATG AGCA CGTAGTTC TTGTTTTTGTTTGAT Rfer_1064 1137260 - 1136634 - | hypothetical protein TERM 988 1136997 - 1137012 + g 88 -3.2 -5.45802 | GCTTTGCCGCCGGCT GCCATT GCGA AACGGC TTTTTCTTTTCAAAC Rfer_1065 1137743 - 1137270 - | hypothetical protein Rfer_1066 1138013 - 1138690 + | hypothetical protein Rfer_1067 1140752 - 1138722 - | hypothetical protein Rfer_1068 1141525 - 1142967 + | hypothetical protein Rfer_1069 1143037 - 1143630 + | hypothetical protein TERM 989 1143696 - 1143677 - g 93 -8.6 -4.90136 | opp_overlap 1143691 1143695, overlap 1143690 1143691 AATCAACATTAAAAA CCTTGACC GCAA AGTCAAGG ATCGGATCGACAAGG Rfer_1070 1143636 - 1144187 + | hypothetical protein Rfer_1071 1145075 - 1144230 - | hypothetical protein Rfer_1072 1146352 - 1145081 - | hypothetical protein Rfer_1073 1147316 - 1146384 - | phage Gp37Gp68 Rfer_1074 1149765 - 1147882 - | D-fructose-6-phosphate amidotransferase TERM 990 1148877 - 1148850 - G 89 -12.7 -4.08692 | opp_overlap 1148849 1148850 1148852 CAATCTCTTTGAAAA CATGCGCCGCG TTGCTG CCCGGCGCATG GTTCATCTGTTGGTC TERM 991 1148850 - 1148877 + g 72 -13.4 -2.62889 | opp_overlap 1148850, overlap 1148849 1148852 CAATCTCTTTGAAAA CATGCGCCGCGT TGCT GCCCGGCGCATG GTTCATCTGTTGGTC TERM 992 1150001 - 1150014 + H 71 -9.5 -3.60505 | overlap 1149999 GGACTTGGGCGCAAT GCGCG GGTC CGCGC TGTTTGTCCTGTCGT Rfer_1075 1150090 - 1150926 + | ABC transporter related Rfer_1076 1150926 - 1151630 + | ABC transporter related Rfer_1077 1151700 - 1152893 + | extracellular ligand-binding receptor TERM 993 1152907 - 1152934 + F 100 -11.2 -4.77986 | opp_overlap 1152894 AAGCTGACCAACAAG GCGGCTGGTCGC GGGT GCGGTTGGCCGC TTTTTCAATATTTCA TERM 994 1153211 - 1153235 + G 78 -4.3 -4.83615 | gap 1, overlap 1153211 1153212 1153234 CCGCTGACGGTGGGT G-CGCTCGGT GTCGTG ATCGAGCGGC TTTTTCTCAAGCATC Rfer_1078 1152971 - 1153855 + | inner-membrane translocator TERM 995 1154005 - 1154015 + G 73 -4.6 -4.66163 | overlap 1153993 TGTCATGAAGCTGCT GTGC TTC GCGC TTTTTGCCTGCGCCT TERM 996 1154358 - 1154390 + G 70 -10.5 -3.52678 | overlap 1154356 TGCTGTCGCTCCAAT CGGACACCGCCATGT ATT ACCTGGTGGTGGCTG TGTTTGTGGCGGGTT TERM 997 1154648 - 1154662 + G 74 -5.6 -4.57073 | overlap 1154634 1154633 TTGATGACGCTGCTG GGTGGC GTC GGCACC TTTTTCGGCCCGGTG Rfer_1079 1153859 - 1154860 + | inner-membrane translocator TERM 998 1155500 - 1155518 + G 75 -13.8 -2.9796 | TCGAGTCTGTTTGCC GTGCCGCC GCT GGCGGCGC TCTCCTTGTGGGTTG TERM 999 1155685 - 1155699 + G 74 -5.6 -4.44046 | overlap 1155662 1155670 CACCATCACACCGAT GGCGCT GCT GGTGCC TTTGTTTGGCATGGG Rfer_1080 1154951 - 1155853 + | hypothetical protein TERM 1000 1156277 - 1156291 + G 77 -11.4 -3.61517 | ATGCCTGACTATCTG GCGCTG GCG CAGCGC TTGTTCACGGCGGAT Rfer_1081 1155899 - 1156384 + | AsnC family transcriptional regulator Rfer_1082 1157168 - 1156407 - | histidine kinase Rfer_1083 1158610 - 1157165 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 1001 1158556 - 1158574 + g 74 -6.7 -4.32649 | gap 1 CCATGATGACCACGT CCA-CGGC AGTC GCCGCTGG TTTGATTTTTGAAAT TERM 1002 1159659 - 1159619 - g 100 -15.4 -4.78572 | gap 1, opp_overlap 1159652, overlap 1159655 CGTGAATGAAGAAAA CGCCGCCGGCGGGCGC-GT GGTG ACTGCGCCGACCAACGGCG CGGCCGGGGTCATTC Rfer_1084 1158783 - 1160201 + | L-serine dehydratase 1 Rfer_1085 1160807 - 1160316 - | hypothetical protein TERM 1003 1160581 - 1160567 - G 73 -4.9 -4.58395 | opp_overlap 1160579 CGTAGGGCTCAAAAA CCAGG TGCTG CCCGG CGCGAACCGCCAATT Rfer_1086 1160937 - 1161899 + | LysR family transcriptional regulator Rfer_1087 1162508 - 1161909 - | 5-formyltetrahydrofolate cyclo-ligase TERM 1004 1162461 - 1162484 + g 100 -9.5 -4.7261 | overlap 1162451 TTCAACCAGGCGTTT GCGCAGGGC TTTTTT GGCCTGCGC TTTCTTTTCATCAGT TERM 1005 1162697 - 1162664 - g 76 -6.6 -4.57569 | overlap 1162652 CCAGGCCTTCAAAAA GGGCAATAGCAAGC GTCTGA GCGAGCTGTTGCCC CAGATGCGTGACCAC TERM 1006 1163751 - 1163741 - g 73 -4.6 -4.66987 | opp_overlap 1163747, overlap 1163744 GACAGCCGAAGAAAA GGAC GCG GCCC GGCTCGACCCCGGCC Rfer_1088 1162563 - 1164524 + | lytic transglycosylase, catalytic TERM 1007 1164570 - 1164581 + F 77 -3.6 -4.98522 | TGAGGGTTGAGGCTA CTGC GACG GCGG TTTTTCTCTGGGATT TERM 1008 1164633 - 1164667 + F 86 -7.1 -5.0538 | gap 1, opp_overlap 1164645, overlap 1164615 1164636 ACCCCTCTCTCGCCC CGCCGGGCGAAAGAGG GGCG CCTCATTTGGCC-GCG TTTTTTAAGGTGGGA Rfer_1089 1165050 - 1165733 + | glutathione S-transferase-like Rfer_1090 1165735 - 1167036 + | metal dependent phosphohydrolase Rfer_1091 1167073 - 1167792 + | two component transcriptional regulator Rfer_1092 1167789 - 1169231 + | periplasmic sensor signal transduction histidine kinase TERM 1009 1170243 - 1170226 - g 74 -3.4 -4.76075 | AGGAGATCAAGAAAA GCAAAC GTGACG GTCTGC AACTCGCTGTCCTGT Rfer_1093 1169265 - 1171460 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rfer_1094 1172527 - 1171457 - | ABC transporter related TERM 1010 1172109 - 1172051 - G 100 -11.8 -5.27335 | gap 4 TTCGTCAAACAAAAA CAGTTGCGGATCACGCGCCAGGGCGCGGCC CAT GGCCACGCGCTGACGC-TGG-CCGC--CTG AGAGCTGCGCCGGCC Rfer_1095 1173386 - 1172532 - | binding-protein-dependent transport systems inner membrane component TERM 1011 1173145 - 1173119 - G 79 -13 -3.53811 | CCCAGGCGGTTGAAA TCAGCACGGCGG GCA CCGCCATGATGA CCGAGTTGACAAAAT Rfer_1096 1174285 - 1173401 - | binding-protein-dependent transport systems inner membrane component TERM 1012 1174386 - 1174406 + r 87 -15.5 -2.86343 | opp_overlap 1174391, overlap 1174391 GTTCGTGTCCCCCGA CCGAAGGCT TGC AGCCTTCGG TCTCCTCCTTGACCT Rfer_1097 1175874 - 1174624 - | extracellular solute-binding protein TERM 1013 1175521 - 1175542 + g 71 -6.5 -4.28049 | overlap 1175526 GCCGTCTGCTATCGC CTTGGGCAG CAGG CTGTCCCAG TTTTCAGCTTTTGCA TERM 1014 1175926 - 1175959 + H 71 -9.7 -3.58329 | gap 1, overlap 1175956 CCATGAAGCAGGGGG TTGATTCGCGCTGGCA CTC TGCC-GCTCGAATTAA TTAATTGTTAATTAA TERM 1015 1176845 - 1176858 + G 78 -2.4 -5.1244 | GGCAGGCGAGATGAG TCAG GGCATG CTGA TTTTTGTGTTGATGC TERM 1016 1177361 - 1177379 + G 88 -7.3 -4.91109 | opp_overlap 1177354 CAGTAAAGCTTCGCG CGCCGCC AAAGA GGAGGCG TTTTTGTAGTCGCCG Rfer_1098 1176129 - 1177388 + | sodium/hydrogen exchanger TERM 1017 1177987 - 1177976 - g 77 -3.6 -5.0133 | overlap 1177978 GATCTGCTTAAAAAA GCCG GTGT CAGC GAAGCGGAGCTGACG TERM 1018 1178385 - 1178403 + G 72 -2.2 -4.85599 | overlap 1178368 TGCCCGAAAAAGCCT GGGGCGCT TGG GGCGGCAC TTTTTATGCGATCCC Rfer_1099 1177505 - 1178767 + | extracellular solute-binding protein TERM 1019 1179142 - 1179153 + G 72 -2.2 -4.75174 | TCTCGTAACTCTGTG GTGG GTAT CTAC TTTTTGCCTTACATC Rfer_1100 1178809 - 1179744 + | binding-protein-dependent transport systems inner membrane component TERM 1020 1179778 - 1179808 + G 77 -11.1 -3.56558 | CGCCTATCTGCTGGT CGGCGTGGGCATG TTCAT CATGCTGGCGCCG TTCTACTTCATGTTC Rfer_1101 1179749 - 1180561 + | binding-protein-dependent transport systems inner membrane component Rfer_1102 1180574 - 1181920 + | Beta-glucosidase TERM 1021 1182359 - 1182383 + G 83 -2.8 -5.27335 | gap 1, overlap 1182342 1182353 TGTGGCCATTGGCCG CGCCATTGTGC GCAA GCCCAA-GGTG TTTTTGTTTGACGAG Rfer_1103 1181922 - 1182995 + | ABC transporter related Rfer_1104 1183095 - 1184501 + | glycoside hydrolase family protein TERM 1022 1185042 - 1185061 + G 76 -9.2 -4.07526 | opp_overlap 1185028, overlap 1185043 AGTCATCGCGCGCCT GCCGGTCG ATGT CGACCGGA TTTATCTGACTGGTT TERM 1023 1185043 - 1185060 + G 72 -12.7 -3.03792 | opp_overlap 1185028, overlap 1185042 GTCATCGCGCGCCTG CCGGTCG ATGT CGACCGG ATTTATCTGACTGGT Rfer_1105 1184641 - 1185402 + | phospholipase/carboxylesterase Rfer_1106 1186945 - 1185479 - | glycoside hydrolase family protein TERM 1024 1185718 - 1185698 - G 73 -9 -3.85698 | gap 1, overlap 1185699 GCCCGGTCGTACAAA GCGGCTGGC GTGC GCCAGC-GC GTAGTAGTCCAAATT Rfer_1107 1188085 - 1187012 - | ABC transporter related TERM 1025 1187736 - 1187750 + g 89 -11.4 -4.24204 | TGCAGCATTTCAGCC GCGCGT CGC ACGCGC TTTTCAATCTCGGTC Rfer_1108 1188983 - 1188090 - | binding-protein-dependent transport systems inner membrane component TERM 1026 1188917 - 1188906 - G 70 -3.6 -4.72272 | overlap 1188907 TGCGGTGAGCAAAAA GGCA TAGA CGCC AATGCGCGCCGGGCT Rfer_1109 1189876 - 1188980 - | binding-protein-dependent transport systems inner membrane component TERM 1027 1189568 - 1189552 - G 77 -3.6 -4.9725 | overlap 1189553 AGGGGTACAGAAAAA TGGTGC GCAGT GCACCT TCAGCCATGACTTCT Rfer_1110 1191130 - 1189895 - | extracellular solute-binding protein TERM 1028 1191087 - 1191111 + g 78 -2 -5.06414 | gap 1, opp_overlap 1191043 1191084, overlap 1191088 GCAACACAAACACCC AGGCCAGCGGC CAGT GCCG-TCGCCA TTTTTCTTAAAACCA Rfer_1111 1192577 - 1191207 - | Beta-glucosidase Rfer_1112 1193727 - 1192717 - | LacI family transcription regulator TERM 1029 1193461 - 1193444 - G 71 -6.3 -4.42238 | gap 1, overlap 1193448 TCACCGCAACCAAAA GCTACCAC CAT GTGGT-GC CCGGCAGTGCGCAGC Rfer_1113 1196324 - 1193724 - | glycoside hydrolase family protein TERM 1030 1194930 - 1194957 + g 71 -8.3 -4.10657 | overlap 1194941 ATTGCCGGTTCCCTG CCAGCCCAGCG TCCACC CGCCGGTCTGG TTTTGCAGGCTGTCG TERM 1031 1196099 - 1196119 + g 77 -3.1 -5.0133 | overlap 1196100 TCACGTTCTTGATTT CCGGCTGGG TCA TCTGGCCGA TTTTTTGCGGCAATG Rfer_1114 1197909 - 1196401 - | tryptophan halogenase TERM 1032 1196623 - 1196670 + g 79 -12.7 -3.4647 | gap 1, overlap 1196621 CCCCTCGCGGTAGAC CCGGCCATTGCTGCTGAACAGG CTAAT CCTGTGCTGCAGC-GTAGCCGG TATTTCCATGTTCCG TERM 1033 1198031 - 1198006 - R 100 -14.7 -5.42259 | opp_overlap 1198006 CCATGTTCAAAAAAA GCCCCGCCGAC TCGC ATCGGCAGGGC TTGTGCGCATGGCCC TERM 1034 1198006 - 1198031 + r 78 -11.8 -3.31144 | opp_overlap 1198006 CCATGTTCAAAAAAA GCCCCGCCGA CTCGCA TCGGCAGGGC TTGTGCGCATGGCCC Rfer_1115 1200881 - 1198050 - | TonB-dependent receptor TERM 1035 1198087 - 1198099 + g 71 -7.7 -4.08064 | AGCAGCACCGAGCGG CCGAA ATT TTCGG TTTTCCAAGGCAGTT TERM 1036 1198245 - 1198262 + g 70 -4.1 -4.60041 | overlap 1198248 TTCAAACGCGTAACC CATTTGG AAAT CCAATTG TTTTTCCGCCTCGAT TERM 1037 1199739 - 1199778 + g 71 -7.1 -4.25256 | overlap 1199740 CAGCTTCAGCTCGTT TTTCCAGCCCAGCGAAG TGATGT CATCGCTGCGATGGAAG TTCTTTTCGTAGACC Rfer_1116 1202212 - 1201199 - | glycerophosphoryl diester phosphodiesterase TERM 1038 1202186 - 1202143 - G 88 -7.2 -4.87803 | overlap 1202147 1202177 GAGCGGCAAATAAAA GGAAGGCAAGCCCGAGGCGC GCTA GCGCTGAAGACTTGCCACCC CAAGAGAAAGCGCAA Rfer_1117 1202895 - 1202236 - | hypothetical protein Rfer_1118 1203320 - 1202892 - | biopolymer transport protein ExbD/TolR Rfer_1119 1203778 - 1203344 - | biopolymer transport protein ExbD/TolR Rfer_1120 1204682 - 1203822 - | MotA/TolQ/ExbB proton channel Rfer_1121 1205828 - 1204836 - | ROK TERM 1039 1205258 - 1205268 + g 79 -8.2 -4.56597 | opp_overlap 1205245 1205243, overlap 1205250 GATGGCCGGCGTGCC CGGC ATT GCCG TTTTTGCCACGCAGC Rfer_1122 1206249 - 1205881 - | mannose-6-phosphate isomerase, type II Rfer_1123 1206760 - 1206323 - | thioredoxin Rfer_1124 1207750 - 1206902 - | RpiR family transcriptional regulator TERM 1040 1207129 - 1207142 + g 70 -4.5 -4.57073 | overlap 1207130 TGGCGGTGATGACGA TGGTG GTTG CACCG TTTTTGCGCGCAATG Rfer_1125 1209235 - 1207781 - | glucose-6-phosphate 1-dehydrogenase TERM 1041 1210047 - 1210025 - g 79 -12.6 -3.44051 | GGTCGAGCAGGACAA CGCCGGTGCC CAT GACCCCGGCG TCCAGTCGGTGCGGC Rfer_1126 1209450 - 1210397 + | transaldolase B TERM 1042 1211748 - 1211759 + G 72 -2.2 -4.77438 | gap 1, overlap 1211722 AACTTTCCGGGTAAC CG-GC CCA GCACG TTTTTGCTGCTCGAT Rfer_1127 1210419 - 1211987 + | glucose-6-phosphate isomerase Rfer_1128 1212121 - 1212765 + | HAD family hydrolase Rfer_1129 1213619 - 1212732 - | bem46 protein Rfer_1130 1213729 - 1214232 + | hypothetical protein TERM 1043 1214344 - 1214321 - T 100 -12.4 -5.27779 | opp_overlap 1214321 TTTAATAGTAAAAAA CCCGCAAGGC TCAC GCTTTGCGGG TTTTTTTGTTTTGTG TERM 1044 1214321 - 1214344 + T 100 -14.6 -6.14618 | opp_overlap 1214321 TTTAATAGTAAAAAA CCCGCAAGGC TCAC GCTTTGCGGG TTTTTTTGTTTTGTG groEL 1216104 - 1214446 - | chaperonin GroEL TERM 1045 1215099 - 1215118 + g 88 -6.4 -4.87133 | CAGCAGCAGCGCCAG CACCGTCG ATGA TGATGGTG TTTTCTTTGCCCACT Rfer_1132 1216475 - 1216185 - | chaperonin Cpn10 TERM 1046 1216544 - 1216510 - H 73 -5.1 -4.6644 | gap 1, opp_overlap 1216513 1216516, overlap 1216514 AACAGAGTTTAAAAA TCAA-GAGTGCCAACC GACA AGTTGGCGCTCATTAA CTTGAAGAGAGAATT TERM 1047 1216539 - 1216514 - H 76 -9.7 -3.81926 | opp_overlap 1216513 1216516, overlap 1216510 GAGTTTAAAAATCAA GAGTGCCAACC GACA AGTTGGCGCTC ATTAACTTGAAGAGA Rfer_1133 1217396 - 1218400 + | sodium/calcium exchanger membrane protein Rfer_1134 1219947 - 1218697 - | hypothetical protein Rfer_1135 1221065 - 1220460 - | two component LuxR family transcriptional regulator Rfer_1136 1222683 - 1221058 - | periplasmic sensor signal transduction histidine kinase TERM 1048 1222537 - 1222482 - G 74 -11.9 -3.51924 | gap 2 GGCTTACCCAGACAA TCCACAGCCAGCGCCTGTTCAACAGCA GCAA TGC-GACGG-CAAGCGCCGGCTGCGGA TTCCAAGGCGTGATA TERM 1049 1223168 - 1223139 - H 71 -8.5 -3.8512 | opp_overlap 1223141 GAGCCACCAGAAGAA GATGCAGCCGCTG GTCA CGACCGCTGCATC ATTCCGATCAGGCCT Rfer_1138 1223382 - 1224551 + | transposase, IS4 Rfer_1140 1225358 - 1224894 - | hypothetical protein TERM 1050 1225562 - 1225580 + H 77 -8 -4.08767 | overlap 1225576 GTAAAAGTGGTCACA CCGTCGGC GGA GGCGGCGG TTTTGCCGCCATGGG Rfer_1142 1226243 - 1226494 + | hypothetical protein TERM 1051 1226816 - 1226787 - g 76 -10.1 -3.78775 | gap 1, overlap 1226788 TGCGCTACGACGAAA CGCGACTTGAGGTC GGC GACATCAAGTCG-G CCGTGCGCCAGCGTG TERM 1052 1226921 - 1226900 - g 93 -11.5 -4.29304 | overlap 1226901 GTACGACAAGACAAA GCGGTGCCG TTGA CGGCACCGA CACCTGCCCCAGCCC TERM 1053 1226920 - 1226901 - g 82 -15 -3.16859 | overlap 1226900 TACGACAAGACAAAG CGGTGCCG TTGA CGGCACCG ACACCTGCCCCAGCC Rfer_1143 1226642 - 1227025 + | heavy metal transport/detoxification protein TERM 1054 1227633 - 1227648 + G 79 -9 -4.1466 | TCATCGTCTTCGTCC TGGCCA TGTT TGGCCA TTTTCAGCATTGGAT Rfer_1144 1227119 - 1229674 + | heavy metal translocating P-type ATPase TERM 1055 1230826 - 1230815 - g 70 -4.4 -4.46212 | CGCGTCACGACAAAA CTTG GCCG CAAG CTCTACGAGACGCCG Rfer_1145 1229726 - 1231405 + | phosphoglucomutase Rfer_1146 1231402 - 1232700 + | hypothetical protein Rfer_1148 1234200 - 1233577 - | hypothetical protein TERM 1056 1233814 - 1233788 - G 89 -10.9 -4.18908 | opp_overlap 1233806, overlap 1233806 AGAGTCGCAAAAGAA GACTGATCGTC GCACA GACGCTCAGTC GAAGTCCAGCGCTGC Rfer_1149 1234307 - 1235155 + | hypothetical protein Rfer_1150 1235803 - 1235513 - | hypothetical protein TERM 1057 1235949 - 1235975 + r 76 -10.2 -3.64369 | gap 1, overlap 1235947 TCTCGCGTCACTTGG CAGCAGGCCGC GGGTAG GCGGCCT-CTG TGTTCTTTATGGCTT Rfer_1151 1237380 - 1236130 - | hypothetical protein Rfer_1153 1238782 - 1238237 - | OmpA/MotB TERM 1058 1238900 - 1238933 + r 72 -11.2 -3.01712 | overlap 1238905 ACTCGTATTACGATC TGCAATTGTCCGAA ATTATA TTCGGACAATTGGA TATTGCGAAAGGCGA Rfer_1154 1239493 - 1239005 - | MarR family transcriptional regulator TERM 1059 1240525 - 1240542 + r 100 -10.5 -5.36441 | overlap 1240537 AGCCAACTTGAGCTT GGGGCCC TTCG GGGCTCC TTTTTTATGTCCGGA Rfer_1155 1241869 - 1240547 - | Cl- channel, voltage gated Rfer_1156 1242123 - 1242971 + | peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 TERM 1060 1243036 - 1243022 - f 86 -7.8 -4.68645 | opp_overlap 1243021 1243024, overlap 1243026 TATTCAAAATTAAAA CAGACG AAT CGCCTG CTTCGGTCCTGAGTA Rfer_1157 1243146 - 1243838 + | MotA/TolQ/ExbB proton channel TERM 1061 1244105 - 1244086 - g 83 -4.2 -5.11112 | overlap 1244087 1244090 AAAGTGCAAGAAAAA TCCAGCCC ACTG GGGCTCAA AGACCTTGCCAGCGC Rfer_1158 1243852 - 1244271 + | biopolymer transport protein ExbD/TolR TERM 1062 1244685 - 1244662 - g 78 -6.7 -4.67173 | overlap 1244679 GAACTCAAAAAACAA CAAGCACTG GACAAA CAGCGCCTG GAAAAGCAGCGCCTT TERM 1063 1244772 - 1244754 - g 85 -7.4 -4.84359 | GCAGCTTGAGAAAAA GCGCTTGC AAG ACAAACGC GAAAGCGACAAAAAA TERM 1064 1244937 - 1244926 - g 85 -5.8 -5.06451 | overlap 1244913 GAGGACGCCAAAAAA CTGG CTGC CCAG CGCAAAGCCAATATC Rfer_1159 1244281 - 1245294 + | TonB-like Rfer_1160 1245718 - 1246029 + | hypothetical protein TERM 1065 1246085 - 1246059 - g 73 -10.2 -3.56366 | gap 1, opp_overlap 1246057 AACAAGTCCCTTAAA CCTCGGCACGG TGGTCT CCGT-CCGAGG CAGTGTTGTGGATAT Rfer_1161 1246033 - 1247589 + | F0F1 ATP synthase subunit beta TERM 1066 1247638 - 1247625 - g 77 -3.7 -5.00616 | TCTTCGCCGAAAAAA GCGGG GTGT CGCGC ATCGTTGCGGAGACG Rfer_1162 1247579 - 1247968 + | F0F1 ATP synthase subunit epsilon Rfer_1163 1247961 - 1248296 + | F0F1-ATPase subunit, putative TERM 1067 1248581 - 1248569 - g 74 -6.9 -4.32046 | overlap 1248571 CGGGCAAAAACCAAA CGCGC CCG GCACG GGAGGCTAGCCATGC Rfer_1164 1248289 - 1248603 + | hypothetical protein TERM 1068 1248951 - 1248961 + G 73 -4.6 -4.59773 | CGTTTTGCGTATTTG TGGC CGT GCCG TTTTTCGGCATCAAG Rfer_1165 1248593 - 1249288 + | F0F1 ATP synthase subunit A Rfer_1166 1249320 - 1249601 + | F0F1 ATP synthase subunit C TERM 1069 1249982 - 1249939 - g 76 -13 -3.31501 | gap 1, opp_overlap 1249932 1249978, overlap 1249929 AGGAAGCGCTGAGAA GCGCGCAGCGGAGCATGAGCG AAG CGCTCAGCCACCGG-GCGCGC GACGAGGTTTTTGCC Rfer_1167 1249605 - 1250585 + | H+-transporting two-sector ATPase, B/B' subunit TERM 1070 1251980 - 1252027 + G 78 -14.1 -3.17075 | gap 2, opp_overlap 1251979 ACCGAGGCTGAACAG GCG-GTGCGCGCTGCGGC-GGCG GACA TGCCGGCCGAGGTGCGCGCGCGC TTCGATTCCGCCGAC Rfer_1168 1250588 - 1252192 + | F0F1 ATP synthase subunit alpha TERM 1071 1252704 - 1252723 + G 70 -12.8 -2.87564 | opp_overlap 1252704 GTACCTGTTCCATAA CCGGCCCG AGTC CGGGTCGG TCTATACACCGGTGA Rfer_1169 1252189 - 1253070 + | H+-transporting two-sector ATPase, gamma subunit Rfer_1170 1255347 - 1253824 - | transposase IS66 TERM 1072 1254190 - 1254216 + g 73 -5.1 -4.63479 | GCGGTTCAGGATCAT CCACTGGTGCA AGGCA TCCAGCAGTGG TTTTGATTTCTCCTG TERM 1073 1255391 - 1255378 - H 80 -4.5 -5.06414 | opp_overlap 1255378 TTTGGTGAATAAAAA GCACC ATTA GATGC TATGTGGGACTACTC Rfer_1171 1255466 - 1256605 + | transposase IS116/IS110/IS902 Rfer_1172 1257369 - 1257034 - | IS66 Orf2 like TERM 1074 1257313 - 1257280 - G 95 -16.1 -3.99678 | ATGGGCAGAACCAAA CACCGACACAACCTT GGCC AAGGCGGTGTCGGTG CCAGCTCGCATGTCC Rfer_1173 1257782 - 1257378 - | transposase IS3/IS911 TERM 1075 1258630 - 1258612 - H 73 -5.2 -4.58663 | opp_overlap 1258612 ATGACGCGCCAAAAA TCCGCTTC ATA GAGACGGA TGGTTGACTCAAGCC TERM 1076 1259338 - 1259309 - H 100 -12.9 -4.67607 | GTCTGAATAAACAAA GGGTTGATGGGCC TGCC AGTCCATCAACCC TTGAACCTACCGGGT TERM 1077 1260192 - 1260177 - g 88 -6.8 -4.91712 | gap 1, overlap 1260180 TGGAACTGACAAAAA GCACCCC GCT GGGG-GC TGCCGTCAATCAAGC Rfer_1174 1259480 - 1260403 + | hypothetical protein TERM 1078 1262001 - 1262013 + G 71 -6.9 -4.21908 | GTGCGCTGTTTGCCA CGGCT GAA GGCCG TTTTGCATGCTGATG Rfer_1175 1260390 - 1262636 + | hypothetical protein TERM 1079 1263984 - 1263972 - g 100 -2.7 -5.87688 | overlap 1263962 AGAATGGAAAAAAAA TTCCT CAA AAGAA TCGCACTGAGTCGGT Rfer_1176 1262633 - 1264090 + | hypothetical protein Rfer_1177 1264087 - 1265172 + | hypothetical protein Rfer_1178 1265548 - 1266147 + | hypothetical protein TERM 1080 1266614 - 1266639 + G 71 -6.2 -4.42806 | opp_overlap 1266594, overlap 1266616 AGCGAATTTGCCGAT TGTTCCATGG CCGCTT CCATGGAAGA TTTCTTTGGAGATCC Rfer_1179 1266499 - 1266930 + | hypothetical protein TERM 1081 1267044 - 1267034 - T 72 -2.4 -4.89393 | GAAACCGCATAAAAA GGGC AGC GCCA GTGTTGGGCGGGAAA Rfer_1180 1267725 - 1267345 - | hypothetical protein Rfer_1181 1267761 - 1268018 + | hypothetical protein Rfer_1182 1268494 - 1268895 + | hypothetical protein Rfer_1183 1268985 - 1269389 + | hypothetical protein Rfer_1184 1269396 - 1270343 + | hypothetical protein Rfer_1185 1270380 - 1271102 + | hypothetical protein TERM 1082 1271894 - 1271878 - g 100 -11.5 -5.01732 | AAGTCGCTCAAAAAA GCGCCGC CTA GCGGCAC AACTACTTTGCGAAT Rfer_1186 1271080 - 1272399 + | hypothetical protein Rfer_1187 1272568 - 1272981 + | hypothetical protein Rfer_1188 1273688 - 1274374 + | hypothetical protein TERM 1083 1274575 - 1274588 + G 71 -6.7 -4.25104 | GCAGAGTTTTGTCAC GCCTT GTCG AAGGC TTTTGGTGGCCGCCA Rfer_1189 1274502 - 1275542 + | hypothetical protein Rfer_1190 1275731 - 1276891 + | integrase Rfer_1191 1277199 - 1278314 + | HNH endonuclease TERM 1084 1278691 - 1278663 - T 78 -5.7 -4.83169 | opp_overlap 1278672, overlap 1278664 1278665 ATGCTGCGACAAAAA GGCGCGCACGGCC TCA GGCCGGGTGCGGG CGTGGTCGCGTAGCG TERM 1085 1278689 - 1278665 - T 75 -12.7 -2.6933 | opp_overlap 1278672, overlap 1278664 1278663 GCTGCGACAAAAAGG CGCGCACGGCC TCA GGCCGGGTGCG GGCGTGGTCGCGTAG TERM 1086 1278672 - 1278720 + T 100 -16.6 -3.59979 | gap 1, opp_overlap 1278665 1278664 1278663 CAAAAAGGCGCGCAC GGCCTCAGGCCGGGTGCGG-GCG TGGT CGCGTAGCGCCCAGCCTGTGGCC TTTCGGATGAAGAAA TERM 1087 1279225 - 1279276 + T 74 -11.5 -3.27951 | gap 1, opp_overlap 1279178, overlap 1279223 CCTGCAGCGCATCGG CCAGCGGGCGCAGTGCGGCT-TCG ATCTG CGAGAGCAGCGCTGCCACGGCTGG TGTTGTCATGCGATG Rfer_1193 1279608 - 1279282 - | putative thioredoxin Rfer_1194 1280036 - 1279764 - | hypothetical protein TERM 1088 1280283 - 1280266 - R 76 -10.5 -3.76224 | overlap 1280250 CCGCGAGGGAGGAAA CCGCGGC GAGT ACCGCGG CTGTCGGAGTGATCT Rfer_1195 1281726 - 1280530 - | putative transposase TERM 1089 1281589 - 1281609 + g 72 -12.5 -3.05463 | overlap 1281591 CAACAGGTGTCCCCC CAGCGCCGC GCT GCGGCACTG TTCGATGGCCGACAT Rfer_1196 1282611 - 1281736 - | phage integrase TERM 1090 1282803 - 1282815 + r 71 -10.5 -3.28712 | ATGGAGACTTCGGTT CGGCC AAT GGCCG TTATGGAGCAGCAAC TERM 1091 1283412 - 1283398 - R 74 -7.8 -4.13767 | TTCGCTATGCCAAAA GGCGCT TCG AACGCC TTGCAGCCATCGTCA Rfer_1197 1283701 - 1283387 - | hypothetical protein TERM 1092 1283455 - 1283443 - G 73 -4.7 -4.62069 | overlap 1283444 1283445 CCGTGAGGCCAAAAA GCGTC AAC GCCGC TCCCGCCGCGTAACC Rfer_1198 1285062 - 1283770 - | hypothetical protein Rfer_1199 1285540 - 1285073 - | hypothetical protein Rfer_1200 1285982 - 1285527 - | hypothetical protein Rfer_1201 1286473 - 1285991 - | hypothetical protein Rfer_1202 1289934 - 1286596 - | UvrD/REP helicase TERM 1093 1286694 - 1286711 + g 93 -8.3 -5.15969 | opp_overlap 1286686, overlap 1286696 CGAAGAACCGCTGTA CCGCGGC GAAT GCCGCAG TTTTTTCGATTGCAC Rfer_1203 1290550 - 1289936 - | hypothetical protein Rfer_1204 1291614 - 1290547 - | sigma-24 (FecI-like) TERM 1094 1291585 - 1291551 - G 71 -5.6 -4.35885 | opp_overlap 1291579 AGGTAGGACAACAAA CGGGGTCGGCCAAC GTCTGCT GTTGGTCGAGTCCG GGTACTCCTTTGATT Rfer_1205 1291959 - 1292285 + | hypothetical protein TERM 1095 1293201 - 1293215 + G 73 -4.2 -4.62069 | overlap 1293189 1293201 TGGGGCGCCGGCTGT TGGCGG CTG TTGCCA TTTTTGGCGTGGCCA Rfer_1206 1292342 - 1293568 + | major facilitator transporter Rfer_1207 1294444 - 1293947 - | aspartyl protease-like TERM 1096 1294728 - 1294718 - R 73 -5.4 -4.67234 | opp_overlap 1294718 AGTTAATTCGAAAAA TTGG ATC CCAA TATCTCTCCTGCGCA Rfer_1208 1295841 - 1294783 - | HNH nuclease Rfer_1209 1296241 - 1295846 - | histidine triad (HIT) protein Rfer_1210 1297425 - 1296238 - | hypothetical protein Rfer_1211 1297512 - 1297880 + | hypothetical protein Rfer_1212 1298947 - 1297901 - | DNA/RNA non-specific endonuclease TERM 1097 1300886 - 1300868 - g 73 -5.2 -4.62069 | opp_overlap 1300869, overlap 1300869 CTCCGACGGGAAAAA TTCGACAG CTG CTGCCGAT GCGTTTTACCTTGAT Rfer_1214 1299645 - 1301132 + | hypothetical protein Rfer_1215 1301976 - 1301452 - | MarR family transcriptional regulator TERM 1098 1301989 - 1302031 + H 95 -8 -5.08824 | opp_overlap 1302013 1302014 CATGACGCATCTTTG CTTACTAATATATTAGTGAT TAA ACTACTAACATGTTAGTAAG TTTTTTCAGTAGCCG Rfer_1216 1302254 - 1303807 + | Acetyl-CoA hydrolase Rfer_1217 1304496 - 1303888 - | hypothetical protein Rfer_1218 1304636 - 1305904 + | natural resistance-associated macrophage protein Rfer_1219 1305975 - 1306451 + | hypothetical protein TERM 1099 1307099 - 1307117 + G 85 -7.3 -4.77036 | overlap 1307096 GCAGGGCTACTGGCA GCTCGGG CTCGA CCCGCGC TTTTTGCTGCTGGCG TERM 1100 1307144 - 1307162 + G 100 -11 -4.91459 | GGCGCTGGCCAGTGG CGTGCCGT TCA ACGGCATG TTTTTGTACGTCTTG TERM 1101 1307177 - 1307188 + G 80 -3.6 -5.09225 | GTTTTTGTACGTCTT GTCG GCGC CGGC TTTTTTGGGTGGGAT Rfer_1220 1306461 - 1307699 + | Bcr/CflA subfamily drug resistance transporter Rfer_1221 1308647 - 1307718 - | LysR family transcriptional regulator Rfer_1222 1309755 - 1308970 - | hypothetical protein Rfer_1223 1311108 - 1310209 - | ABC-type transport system periplasmic component Rfer_1224 1312001 - 1311201 - | ABC-type transport system ipermease component TERM 1102 1311271 - 1311255 - G 81 -5.7 -4.8083 | opp_overlap 1311262, overlap 1311257 CAAGAGGACCAAAAA CAGGCGC GCG GCACCGG GCTGCACACCGTTGG TERM 1103 1312514 - 1312544 + G 88 -13.2 -3.57144 | overlap 1312515 CGGTGCTGGCCTGGT TGCCGCAGGTGCGC ACT GAGCAGCTGCGGCG TTTGCAACTCGCCGC TERM 1104 1312515 - 1312543 + G 77 -14.5 -2.74144 | overlap 1312514 GGTGCTGGCCTGGTT GCCGCAGGTGCGC ACT GAGCAGCTGCGGC GTTTGCAACTCGCCG Rfer_1225 1312114 - 1312863 + | hypothetical protein TERM 1105 1313652 - 1313633 - g 73 -4.9 -4.70659 | opp_overlap 1313633, overlap 1313646 CTGGAGACGCAAAAA CTGGCGG GTGAAA CGGCCAG TTTGTTGCCCGATGC TERM 1106 1314033 - 1314062 + G 70 -10 -3.53012 | overlap 1314005 1314039 GCGACTATTTTCTGG CCCGCAGCGAGC AGTCTG GCTTGTTGTGGG TTTACCGCGAGCGCC Rfer_1226 1312847 - 1314142 + | hypothetical protein TERM 1107 1315850 - 1315871 + G 71 -7.2 -4.18018 | CTGCCTGGACCTCAT CAGCGTGC AGCGCG GCACGCCG TTTTCAATGCAGGAC TERM 1108 1316140 - 1316160 + G 74 -5.3 -4.56597 | opp_overlap 1316142 1316143, overlap 1316142 1316143 TGCAAGAAGTTCTGA AACGCACGC TGG GCGTGCCTA TTTTTCAGGAGCAGG TERM 1109 1317239 - 1317213 - g 70 -10 -3.55622 | overlap 1317215 TGGAAGTCCTTGAAA GAGCGGCAACGC CCG GCGCTGCTGCGC TCGCGCCTGCTGGCG TERM 1110 1317237 - 1317215 - g 72 -11.2 -3.35522 | overlap 1317213 GAAGTCCTTGAAAGA GCGGCAACGC CCG GCGCTGCTGC GCTCGCGCCTGCTGG Rfer_1227 1314126 - 1317380 + | DNA polymerase III, alpha subunit TERM 1111 1317410 - 1317448 + T 83 -9.5 -4.13767 | gap 1, opp_overlap 1317412 1317414 1317415, overlap 1317411 GAAAGACGCGCAAAA AAGAG-CGGCCAGCGTTC CATG GAACGCTGGCCGACACCA TTTTCAAATCAAAAC TERM 1112 1317411 - 1317447 + T 81 -13 -3.08046 | gap 1, opp_overlap 1317412 1317414 1317415, overlap 1317410 AAAGACGCGCAAAAA AGAG-CGGCCAGCGTTC CATG GAACGCTGGCCGACACC ATTTTCAAATCAAAA TERM 1113 1317446 - 1317412 - T 100 -16.5 -5.04987 | gap 1, opp_overlap 1317411 1317410, overlap 1317414 1317415 AAGACGCGCAAAAAA GAG-CGGCCAGCGTTC CATG GAACGCTGGCCGACAC CATTTTCAAATCAAA TERM 1114 1317443 - 1317414 - T 100 -17.9 -4.14633 | opp_overlap 1317411 1317410, overlap 1317412 1317415 GACGCGCAAAAAAGA GCGGCCAGCGTTC CATG GAACGCTGGCCGA CACCATTTTCAAATC TERM 1115 1317442 - 1317415 - T 100 -21.4 -3.08056 | opp_overlap 1317411 1317410, overlap 1317414 1317412 ACGCGCAAAAAAGAG CGGCCAGCGTTC CATG GAACGCTGGCCG ACACCATTTTCAAAT Rfer_1228 1319059 - 1317485 - | hypothetical protein TERM 1116 1319824 - 1319800 - g 89 -10 -4.72272 | gap 1, overlap 1319817 GCTGCTGACCAAAAA GGCCACGCGCG CCAA CACGC-TGGCC GGCCTGCGCAGCGCG Rfer_1229 1319612 - 1320520 + | peptidase C14, caspase catalytic subunit p20 TERM 1117 1320652 - 1320623 - g 76 -14.9 -2.52516 | overlap 1320622 CGTGGCAGCAGCAAG GCCTCGGTGCGCG TTGG CGCGCAGCGCGGC GGTGCTGAGGCGGTG TERM 1118 1320973 - 1320944 - g 79 -12.1 -3.53091 | gap 1, overlap 1320947 1320959 1320960 ACCGGCCTGGCCAAA GAC-CCGGCGGCCA AAC TGGCCGCCGCCGCC ATCACCAGGAAAGTC TERM 1119 1320969 - 1320947 - g 76 -14.8 -2.60496 | overlap 1320944 1320959 1320960 GGCCTGGCCAAAGAC CCGGCGGCCA AAC TGGCCGCCGC CGCCATCACCAGGAA TERM 1120 1321871 - 1321902 + G 89 -10 -4.46212 | gap 1, overlap 1321845 1321844 TACGGCGGCGCGCCG CGTGCCGCCAGCGCC GCC GGCGCCGG-GGCGAG TTTTGTGCTCGACCG TERM 1121 1324635 - 1324680 + G 85 -6 -5.08824 | gap 2, overlap 1324636 1324642 TGCATGTCGCCGGCC ATGGCGCCC-CCGGCGCC-CGC GGCG GCGTGGTGCTGTCGGGCGACAC TTTTTTGGGTGCCGC Rfer_1230 1320533 - 1326028 + | hypothetical protein TERM 1122 1326924 - 1326969 + G 100 -24.8 -2.71712 | opp_overlap 1326945 1326946, overlap 1326924 ACGCCTCGCCGCGAC TCCCGCGCCAGCACCCGC AAAGCCGGAC GCGGGTGCTGGCGCGGGC ATTTCCGCCGCAACC TERM 1123 1326924 - 1326970 + G 100 -23.2 -3.53012 | gap 1, opp_overlap 1326945 1326946, overlap 1326924 ACGCCTCGCCGCGAC T-CCCGCGCCAGCACCCGC AAAGCCGGAC GCGGGTGCTGGCGCGGGCA TTTCCGCCGCAACCA Rfer_1231 1326025 - 1327737 + | hypothetical protein Rfer_1232 1327780 - 1328829 + | ribonuclease Z Rfer_1233 1329134 - 1328832 - | hypothetical protein Rfer_1234 1329261 - 1330427 + | lipopolysaccharide biosynthesis Rfer_1235 1330447 - 1331409 + | NAD-dependent epimerase/dehydratase Rfer_1236 1331544 - 1331948 + | hypothetical protein TERM 1124 1332937 - 1332920 - g 85 -2 -5.34381 | gap 1 AAAGCCAAACAAAAA CT-AGGC TGGGT GCCTGAG ATCACCGCGCAAGAA TERM 1125 1333021 - 1332997 - g 72 -2.8 -4.74103 | gap 1, overlap 1333000 GGTTGAAGCGAAAAA GCACGCTTTGC TCAA GCAGAACG-GC TACAGCGTCAATGTG Rfer_1237 1331945 - 1333048 + | GDP-mannose 4,6-dehydratase TERM 1126 1333780 - 1333811 + G 83 -4.4 -5.08367 | gap 1, overlap 1333781 1333806 CCAGCATGGAAACCC GTGGTGAGCATGCGC ACC GTGTGTGC-CACCAA TTTTTGATTTGTGTT Rfer_1238 1333110 - 1334048 + | WxcM-like Rfer_1239 1334045 - 1335151 + | DegT/DnrJ/EryC1/StrS aminotransferase Rfer_1240 1335167 - 1336648 + | polysaccharide biosynthesis protein Rfer_1241 1336671 - 1337450 + | 2-dehydro-3-deoxyglucarate aldolase Rfer_1242 1337447 - 1338217 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 1127 1338234 - 1338224 - g 76 -6.8 -4.50627 | opp_overlap 1338232 CAGCCATGAAAGAAA GCGA TAT TCGC CCAGAGGCGTTGCTC Rfer_1243 1338214 - 1339203 + | 3-demethylubiquinone-9 3-methyltransferase TERM 1128 1340101 - 1340078 - g 89 -10.4 -4.46675 | gap 1, opp_overlap 1340076, overlap 1340074 ACCCAATACAACAAA GACC-CTTCGT GGG ACGAAGAGGTC ACATCTTTTGTTGAT Rfer_1244 1339211 - 1340260 + | oxidoreductase-like TERM 1129 1340376 - 1340360 - g 70 -4.5 -4.45117 | TAGATGTCAAAGAAA TTGAACA ATT TATTCAA ACGCTGCTAGACGCT Rfer_1245 1340257 - 1340859 + | sugar isomerase (SIS) Rfer_1246 1340840 - 1341586 + | short-chain dehydrogenase/reductase SDR TERM 1130 1342544 - 1342520 - g 83 -2.2 -5.22289 | gap 1 CATGAAAGACAAAAA GAACACA-GCT ACTC AACTTGTGCTC ATCCTCCCGATAGGC Rfer_1247 1341579 - 1342649 + | 3-dehydroquinate synthase Rfer_1248 1342646 - 1343578 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Rfer_1249 1343628 - 1344113 + | acetyltransferase Rfer_1250 1344138 - 1344911 + | nucleotidyl transferase Rfer_1251 1344920 - 1346023 + | NAD-dependent epimerase/dehydratase TERM 1131 1346087 - 1346117 + G 95 -14.1 -4.07885 | opp_overlap 1346095 GTGACATTCTTCACG CCATGAAAGCCAG CTCGC CCGGCTTTCATGG TTTTGGCGAGGCGTA Rfer_1252 1346020 - 1346445 + | hypothetical protein Rfer_1253 1346461 - 1347579 + | DegT/DnrJ/EryC1/StrS aminotransferase Rfer_1254 1347654 - 1348676 + | hypothetical protein TERM 1132 1348674 - 1348688 + G 70 -4.4 -4.48987 | ACTGAGTGCCATGCG TAAAAT AAT ATTTTA TTTTCCTTATAAAGG Rfer_1255 1348669 - 1349907 + | hypothetical protein TERM 1133 1350745 - 1350735 - g 84 -4 -5.26119 | overlap 1350742 TGGCGAAAAATAAAA GAAA TAA TTTC TACCCGAGAAGAAAA Rfer_1256 1350323 - 1351198 + | glycosyl transferase family protein TERM 1134 1351702 - 1351713 + G 89 -4.4 -5.19275 | GGCAGGCGACCTTAA TTCC AATT GGAA TTTTATTTTATCACT Rfer_1257 1351191 - 1352351 + | hypothetical protein Rfer_1258 1352760 - 1353263 + | transferase hexapeptide protein Rfer_1259 1353266 - 1354381 + | glycosyl transferase, group 1 Rfer_1260 1354551 - 1355699 + | NAD-dependent epimerase/dehydratase TERM 1135 1355969 - 1355982 + G 72 -2.3 -4.85782 | ATTGCTGTGCGATGC CCCAT TGGC AAGGG TTTGTTTTTGCCGCA Rfer_1261 1355696 - 1356280 + | Serine acetyltransferase-like TERM 1136 1357220 - 1357186 - g 71 -9.5 -3.76048 | overlap 1357190 GCGTAATCAATAGAA CCAATCCAGAAATTC CGGCC GAATTTCTGGATCAA CCCTATCTACCAGTC TERM 1137 1357216 - 1357190 - g 79 -12.5 -3.56056 | overlap 1357186 AATCAATAGAACCAA TCCAGAAATTC CGGCC GAATTTCTGGA TCAACCCTATCTACC Rfer_1262 1356282 - 1357331 + | hypothetical protein Rfer_1263 1357372 - 1357932 + | sugar transferase Rfer_1264 1359675 - 1358008 - | O-antigen polymerase TERM 1138 1359314 - 1359301 - G 74 -3.1 -4.83615 | gap 1, overlap 1359302 GACGGCTGATAAAAA TGC-GC CCA GCAGCA GGGTGCGAGCAAAGA TERM 1139 1359602 - 1359581 - G 85 -5.8 -5.04987 | AACACCGCCAAAAAA GCCAGCAC TTCGTT GTGCCAGC TGACCCAAGGCGGAA TERM 1140 1359688 - 1359706 + r 100 -14.6 -4.27316 | opp_overlap 1359688 CATGAGCTAAAAAAA TACGCCCC GAT GGGGCGTA TTTTCAATTGCAGGA TERM 1141 1359706 - 1359688 - R 100 -14.6 -5.48825 | opp_overlap 1359688 CATGAGCTAAAAAAA TACGCCCC GAT GGGGCGTA TTTTCAATTGCAGGA Rfer_1265 1360246 - 1359764 - | methylation TERM 1142 1360290 - 1360276 - H 78 -2.1 -5.27476 | overlap 1360277 GTTAAGAAAAGAAAA CGAGA CAGAC TCTCA CAGCAGATTCCGTGC TERM 1143 1360652 - 1360611 - g 80 -11.4 -3.70902 | opp_overlap 1360632 1360651, overlap 1360618 1360619 1360621 CGGCGCATAGCCAAA GGCGAAATCACGCGCGTC GCCGAT GACGCGCGCGGGCGCGCC ATGCTACTGTGGAGC TERM 1144 1360645 - 1360618 - g 76 -10.5 -3.72363 | opp_overlap 1360632, overlap 1360611 1360619 1360621 TAGCCAAAGGCGAAA TCACGCGCGTC GCCGAT GACGCGCGCGG GCGCGCCATGCTACT TERM 1145 1360644 - 1360619 - g 73 -14 -2.82936 | opp_overlap 1360632, overlap 1360618 1360611 1360621 AGCCAAAGGCGAAAT CACGCGCGTC GCCGAT GACGCGCGCG GGCGCGCCATGCTAC TERM 1146 1360642 - 1360621 - g 70 -13 -2.9587 | opp_overlap 1360632, overlap 1360619 1360618 1360611 CCAAAGGCGAAATCA CGCGCGTC GCCGAT GACGCGCG CGGGCGCGCCATGCT Rfer_1266 1360527 - 1361015 + | Sel1-like TERM 1147 1361073 - 1361098 + T 93 -10.5 -4.37886 | opp_overlap 1361073 CTCTCAATGAAAAAA GCCGCTAAC TGTATGTC GTTAGCGGC TTTTGTCAGACCTAA TERM 1148 1361098 - 1361073 - T 100 -10.5 -5.26875 | opp_overlap 1361073 CTCTCAATGAAAAAA GCCGCTAAC TGTATGTC GTTAGCGGC TTTTGTCAGACCTAA Rfer_1267 1362202 - 1361219 - | farnesyltranstransferase TERM 1149 1362400 - 1362370 - g 91 -8.2 -4.83169 | ACGCGGTCATAAAAA CCGGCGGCAAGC AATATCG GGTTGCAGCCGG CGAAAAAATTAAAGT Rfer_1268 1362267 - 1362662 + | ribosomal protein L21 rpmA 1362674 - 1362931 + | 50S ribosomal protein L27 TERM 1150 1362956 - 1362974 + F 100 -13.8 -5.72622 | opp_overlap 1362956 AACTCCCCTCTAAGA CCCTGCGC ACG GCGCGGGG TTTTTTATTTGTGAG TERM 1151 1362974 - 1362956 - f 72 -11.6 -3.02043 | opp_overlap 1362956 AACTCCCCTCTAAGA CCCTGCGC ACG GCGCGGGG TTTTTTATTTGTGAG TERM 1152 1363496 - 1363479 - g 77 -8.3 -4.4009 | overlap 1363481 CGCCACGGCAGAAAA CGCCCGG CTGG CCGGGTG AAAAGCGCAATCTCA obgE 1363055 - 1364122 + | GTPase ObgE Rfer_1271 1364185 - 1365321 + | gamma-glutamyl kinase TERM 1153 1365344 - 1365372 + T 73 -5.1 -4.57073 | GGCCTCGTCTGTGGG CCCTGTGCCACCT TTA ATGGGCCACGGGG TTTTTCAGCGCCCTG Rfer_1272 1365848 - 1365357 - | hypothetical protein Rfer_1273 1366479 - 1365838 - | NUDIX hydrolase TERM 1154 1365947 - 1365926 - G 84 -10.1 -4.14739 | opp_overlap 1365931 1365939 GGAGGGAGTTCAAAA TTGGCGCCG GGCA CGGCGTCAA ACGTCGTCTCCTGCT TERM 1155 1366226 - 1366210 - G 80 -10.8 -4.07568 | CTGGCCTTTGTAAAA GCCGCG TGCAT CGCGGC GAATGTATCGGTCTG Rfer_1274 1366572 - 1368314 + | prolyl-tRNA synthetase Rfer_1275 1368389 - 1368946 + | lytic transglycosylase, catalytic Rfer_1276 1369278 - 1368952 - | glutaredoxin-like protein TERM 1156 1369561 - 1369550 - g 75 -2.2 -4.88222 | overlap 1369554 ATGAAAATCGAAAAA GACA CTGC CGTC ACCTTGCGTTACAAG Rfer_1277 1369535 - 1370011 + | putative fkbp-type peptidyl-prolyl cis-trans isomerase Rfer_1278 1372073 - 1370040 - | phage integrase TERM 1157 1370272 - 1370254 - G 70 -10.2 -3.53012 | TGCGGCTGCTCCAAA CCAGCGTC GTA GGCGCTGG AGGTGACAACGGAAT TERM 1158 1371196 - 1371215 + g 71 -9.2 -3.8186 | opp_overlap 1371208 TACTGCGGCGTGAAC TGGCGCTC CAAA GCGCGCCA TTCTTCCTTCGCCTG Rfer_1279 1373027 - 1372185 - | HemK family modification methylase Rfer_1280 1374208 - 1373108 - | peptide chain release factor 1 TERM 1159 1373333 - 1373353 + g 85 -6.8 -4.7497 | gap 1 CTCGGCGGCGTCCTT GGCCGC-GC GCTC GCTGCGGTC TTTTTCATGGATACG Rfer_1281 1375585 - 1374326 - | shikimate/quinate 5-dehydrogenase TERM 1160 1375210 - 1375220 + g 93 -8.2 -4.98531 | overlap 1375189 CGGCGGCTTCGGCCG CGCG CAC CGCG TTTTTGATTTGACCC TERM 1161 1375527 - 1375554 + g 75 -14.1 -2.93723 | opp_overlap 1375530 1375544, overlap 1375539 AGGGCGAACGCGAAG CGACCGCGCAG ATCAAG CGGCGCGGTCG TGTGATTGATGCCCA Rfer_1282 1375657 - 1375935 + | hypothetical protein Rfer_1283 1376737 - 1375952 - | glycerophosphodiester phosphodiesterase TERM 1162 1376382 - 1376370 - G 71 -5.5 -4.38712 | TCGATGTTCAGAAAA TAGCC GTT GGCCA GGCAAAAACGGGCAA TERM 1163 1376427 - 1376409 - G 84 -10.2 -4.14472 | GCAATATTCTCAAAA CTGGCGAG CGG CTCGCCGG CAAAAGCACGCGAAT Rfer_1284 1377786 - 1376749 - | ABC transporter related TERM 1164 1377033 - 1377043 + g 81 -8.2 -4.58283 | overlap 1377006 TGGTGTTGGCGCTGG CGCC GGG GGCG TTTTTGAGCAGGTTC TERM 1165 1377358 - 1377315 - G 100 -6.7 -5.95539 | gap 3 CGTCAAACAAAAAAA CCTGCGGCTGGCGCACGATGGC GCG GCC--CATG-GCCACCCGCTGG CGCTGGCCACCTGAG TERM 1166 1377752 - 1377763 + g 83 -2.2 -5.2422 | TTGCCGTGCCCATAG CGTT TGGT GACG TTTTTTAATGTGATT Rfer_1285 1378705 - 1377854 - | twin-arginine translocation pathway signal Rfer_1286 1379602 - 1378721 - | binding-protein-dependent transport systems inner membrane component Rfer_1287 1380920 - 1379613 - | extracellular solute-binding protein TERM 1167 1380008 - 1380024 + g 71 -7.9 -4.13767 | opp_overlap 1380005 1380004 TGACCCACAAACTGG CACCGCC AAT GACGGTG TTTTGCGGTGCGCCG TERM 1168 1382796 - 1382754 - g 70 -4.1 -4.7078 | gap 2 GGAAGCACGCAAAAA GTTCTGGCTCGATCGCAAGCG CAC CGC-CGCCATC-AGCCGGCAC ACCAACGCGTTCAAG TERM 1169 1383758 - 1383774 + G 78 -4.3 -4.82901 | AGATTTTGGCGACCT CGCTGCT GGT GGAAGCG TTTTTGTACGAAGAG TERM 1170 1384275 - 1384287 + G 80 -3.3 -5.08255 | overlap 1384262 GTCCACCACGGCCGA GACCG AGG CGGTG TTTTATTTTCCCGGT Rfer_1288 1381153 - 1385076 + | FAD linked oxidase-like TERM 1171 1385098 - 1385130 + G 86 -13.3 -3.53012 | overlap 1385100 AGCGACTCAACTTGT CCCCTGTGCGCCGCC ACG GGTGGTGCACTGGTG TTTCAGGGCGAAAAA TERM 1172 1385100 - 1385128 + G 86 -14.5 -3.34398 | overlap 1385098 CGACTCAACTTGTCC CCTGTGCGCCGCC ACG GGTGGTGCACTGG TGTTTCAGGGCGAAA TERM 1173 1385169 - 1385184 + G 84 -11.8 -4.10161 | overlap 1385157 1385178 CATCCGGGCGATGGA GGCCGG TTTC CCGGCC TTTTACCGGGTCGTC TERM 1174 1385376 - 1385390 + G 71 -8.6 -4.07687 | TGTGATTGCCCGCTT TGACTG GGA CAGTCA TTTTCCGGCGCCGGT Rfer_1289 1385080 - 1385523 + | histidine triad (HIT) protein Rfer_1290 1385567 - 1385980 + | hypothetical protein TERM 1175 1386198 - 1386226 + G 70 -5.2 -4.56775 | gap 2, overlap 1386203 CAGGTGCTCGACATT GCCGGCGGCACCGG TGA CCTG-GC-GCTGGC TTTTTCCAAAAAAGT Rfer_1291 1386003 - 1386734 + | ubiquinone/menaquinone biosynthesis methyltransferases Rfer_1292 1386759 - 1387715 + | import inner membrane translocase, subunit Tim44 TERM 1176 1387791 - 1387814 + F 93 -8.8 -4.7497 | opp_overlap 1387790 TTTCAGGGAATAATC GGGGGCTATG GCAA CACAGTCCCC TTTTTCATGGCTGGA TERM 1177 1387987 - 1387975 - g 73 -4.7 -4.65895 | opp_overlap 1387983 CTGGCCAGGCAAAAA GGGCG TGT CGTCC TGATGCAGTGGCGCT Rfer_1293 1387798 - 1388352 + | hypothetical protein ubiB 1388349 - 1389914 + | putative ubiquinone biosynthesis protein UbiB TERM 1178 1390319 - 1390269 - g 84 -8.9 -4.4648 | overlap 1390270 AGTTCCACGACAAAA CCAGTTGCA-ACGCCGCCGGCAGCC GGT GGCTGC-GGTGGCGCCTGCGCCTGC CATTAACGTTGCCCC TERM 1179 1390318 - 1390270 - g 76 -12.4 -3.27406 | overlap 1390269 GTTCCACGACAAAAC CAGTTGCA-ACGCCGCCGGCAGCC GGT GGCTGC-GGTGGCGCCTGCGCCTG CCATTAACGTTGCCC Rfer_1295 1389984 - 1390325 + | hypothetical protein TERM 1180 1390791 - 1390824 + G 84 -8.7 -4.48877 | overlap 1390792 TCCAGACCGGCACTC CCGGCGGCGAGGTGG CTCA CCACCTCGGGGCTGA TTTTGTGAGTGTTTA TERM 1181 1390792 - 1390823 + G 76 -12.2 -3.28242 | overlap 1390791 CCAGACCGGCACTCC CGGCGGCGAGGTGG CTCA CCACCTCGGGGCTG ATTTTGTGAGTGTTT TERM 1182 1390858 - 1390870 + G 85 -2.6 -5.32882 | TCCGACGACGCCGAA CCCG ACCAG TGGG TTTTTTCTGCTGCTG Rfer_1296 1390328 - 1391008 + | hypothetical protein TERM 1183 1391149 - 1391162 + G 75 -2.3 -4.89852 | overlap 1391138 1391150 TAATCGTCGCCGCGA CCACG GGGG CGTGA TTTTTGTCGATATCC TERM 1184 1391250 - 1391260 + G 70 -3.2 -4.67608 | AGGTGGCCGAGGGTC TTCG CAA CGAG TTTTGTATTCAGGTC aspS 1391057 - 1392892 + | aspartyl-tRNA synthetase TERM 1185 1392928 - 1392948 + G 95 -6 -5.64274 | opp_overlap 1392929, overlap 1392929 TTCAGGCAGAATGAA AGGGCGCT TGAAT GGCGCCCG TTTTTTTATGCCTAA TERM 1186 1392929 - 1392947 + G 73 -9.5 -3.9748 | opp_overlap 1392929, overlap 1392928 TCAGGCAGAATGAAA GGGCGCT TGAAT GGCGCCC GTTTTTTTATGCCTA TERM 1187 1392947 - 1392929 - g 76 -8.8 -4.00868 | opp_overlap 1392929 1392928 TCAGGCAGAATGAAA GGGCGC TTGAATG GCGCCC GTTTTTTTATGCCTA ntpA 1392923 - 1393435 + | dATP pyrophosphohydrolase Rfer_1299 1393432 - 1394190 + | endonuclease/exonuclease/phosphatase Rfer_1300 1394233 - 1395468 + | phospholipase D/transphosphatidylase TERM 1188 1396133 - 1396103 - g 71 -9.6 -3.745 | overlap 1396101 1396104 TGATTCAGGAAAAGA CCCAGCCCGACGGC CTG GCCATCGTGATGGA GGCGACCCATTTCTG Rfer_1301 1395547 - 1396275 + | GTP cyclohydrolase I Rfer_1302 1396278 - 1396700 + | BLUF TERM 1189 1397560 - 1397575 + G 71 -7.5 -4.1585 | overlap 1397555 1397574 AGGGCTGGATCGTCA CCGCC TGCAGT GGCGG TTTTAGACCTTCTGA Rfer_1303 1396722 - 1397594 + | hypothetical protein Rfer_1304 1398414 - 1397578 - | cobyrinic acid a,c-diamide synthase TERM 1190 1397800 - 1397830 + g 77 -14.7 -2.78216 | overlap 1397801 1397802 1397817 CTGCAATTGGGTCGT GATGGCACGCCCG TCACC CAGGCGTGCCGTC TGGTTGATGACCATG TERM 1191 1398140 - 1398119 - G 74 -3.5 -4.75308 | opp_overlap 1398119, overlap 1398121 AGCAAGACCGAAAAA CCGCCGGGC GCCC GCACGATGG CTTCTTCGAGTTTGG Rfer_1305 1399187 - 1398417 - | diguanylate cyclase Rfer_1306 1399362 - 1399889 + | nuclease (SNase-like) Rfer_1307 1400652 - 1399900 - | UBA/THIF-type NAD/FAD binding protein Rfer_1308 1402135 - 1400663 - | carboxyl-terminal protease TERM 1192 1400770 - 1400760 - G 71 -6.8 -4.17023 | TGAATCAGCTGAAAA TCCG TGT CGGA GCCGTACTCCGGCAG TERM 1193 1401400 - 1401378 - G 77 -3.3 -5.00616 | overlap 1401388 TTGGCCGGCAAAAAA GCCGCCG AAATGGCCA CGGCCGC GTCCAGATAGCCGCC TERM 1194 1401562 - 1401582 + g 71 -6.8 -4.15044 | GTTCGATCACCTTGC TGCGCACC GACTG GGTGCGGA TTTCTTCGCGCACGA Rfer_1309 1403068 - 1402325 - | phosphoglycerate mutase 1 family protein TERM 1195 1402601 - 1402587 - G 70 -3.4 -4.72272 | opp_overlap 1402596, overlap 1402591 GCCTCGTACCAAAAA GGCATG ACC CGCGCC ACCGTGTCCTTCAGG Rfer_1310 1403174 - 1403581 + | rhodanese-like protein Rfer_1311 1403613 - 1403882 + | glutaredoxin GrxC TERM 1196 1403945 - 1403971 + F 72 -3.7 -4.68908 | opp_overlap 1403959, overlap 1403959 CGTTTCCCTTCGTTG GCCCGCT CAATCCACAAGGC AGCGGGC TTTGTTTTAACTGAA Rfer_1312 1404056 - 1404523 + | preprotein translocase subunit SecB Rfer_1313 1404575 - 1405615 + | glycerol-3-phosphate dehydrogenase (NAD(P)+) TERM 1197 1405648 - 1405667 + T 79 -3.4 -5.27477 | overlap 1405650 GCTATGCTGACGCCA CACGCCGG TCAG CCCGCGTC TTTTTTAATTCGCGT TERM 1198 1405650 - 1405665 + T 71 -6 -4.26777 | overlap 1405648 TATGCTGACGCCACA CGCCGG TCAG CCCGCG TCTTTTTTAATTCGC Rfer_1314 1408232 - 1405656 - | cyanophycin synthetase TERM 1199 1406599 - 1406611 + g 70 -10.5 -3.53012 | CCTTCGCGCAGCATG CCGCC GCG GGCGG TTTCCAGCACGGCGG TERM 1200 1407192 - 1407164 - G 82 -14.5 -3.14931 | opp_overlap 1407163 1407149 CCGAGTCGGCATCAA GGCCCTGGCCTGC CAG GCACGCCAGGGCA ATATCGTCAAATCGG TERM 1201 1407235 - 1407251 + g 75 -7.9 -4.20749 | overlap 1407238 1407248 GAGGTCGCATGGCCG GAGCCGC GGC GCGGGTC TTTGTTGACCTGTTC TERM 1202 1407589 - 1407603 + g 72 -2.7 -4.74132 | overlap 1407600 GGAACCGGCACGCCC GCCGC AGCCA GCAGC TTTTTGGTCAGCTGT Rfer_1315 1410405 - 1408237 - | cyanophycin synthetase TERM 1203 1408288 - 1408268 - G 71 -6.7 -4.20106 | AAATCTGATTCAAAA GCGCGCAGC CCG GCTGCGATC AGCTCCGGGTCGATG TERM 1204 1408880 - 1408847 - G 83 -4.5 -5.0916 | gap 1, overlap 1408848 GCGCCAAGATAAAAA CCGTCACGACAGGCCA CGC CGACCTGTC-TGCCGC TGATATGGACCAGCC TERM 1205 1410733 - 1410708 - g 74 -12.5 -3.14132 | gap 1 GGTGCTGGTCACCAA CCGGCGC-CTGC TGA GCCGCGCGCCGG ACGGCAGTTGGCAGG TERM 1206 1411347 - 1411397 + G 80 -11.1 -3.83205 | gap 1, overlap 1411348 1411351 CACCACCACCTACGA GCACCTGCTGCGCATGTCGCTGGA GTAC TTCGGCGGCAAGCGCACC-GGTGA TTTGATGTCGCGCAT TERM 1207 1411348 - 1411396 + G 79 -14.6 -2.89602 | gap 1, overlap 1411347 1411351 ACCACCACCTACGAG CACCTGCTGCGCATGTCGCTGGA GTAC TTCGGCGGCAAGCGCACC-GGTG ATTTGATGTCGCGCA TERM 1208 1411351 - 1411394 + G 76 -13.8 -2.99871 | overlap 1411348 1411347 ACCACCTACGAGCAC CTGCTGCGCATGTCGCTGGA GTAC TTCGGCGGCAAGCGCACCGG TGATTTGATGTCGCG TERM 1209 1411426 - 1411440 + G 75 -2.1 -4.87665 | gap 1 ATCGGCAGCGAGAGT GACCGC ATTT GCG-TC TTTTTGTCGCTGCAC Rfer_1316 1410487 - 1412841 + | ABC transporter related Rfer_1317 1412838 - 1413326 + | hypothetical protein TERM 1210 1414267 - 1414300 + G 76 -6.1 -4.69027 | gap 1, overlap 1414270 1414271 1414289 1414293 1414294 1414297 TCGACCGTATTTCCA TCGG-CGCCTTGAC CAAAGAC GTCAAGGCGATTGA TTTTTCAATGCGTTT Rfer_1318 1413444 - 1414334 + | nicotinate-nucleotide pyrophosphorylase TERM 1211 1414452 - 1414435 - g 73 -10.5 -3.57263 | opp_overlap 1414435, overlap 1414419 AGCCCCAGCGTGAAA CCGCAGC CGGT GCCGCGG TGTGTGCCACCAAAC Rfer_1319 1414377 - 1415513 + | quinolinate synthetase TERM 1212 1416538 - 1416549 + F 71 -4.4 -4.56597 | opp_overlap 1416538 CGCCGCACTATTCAA TGCA CCTG TGCA TTTTTCAAAAAGAGA TERM 1213 1416635 - 1416668 + F 84 -13.9 -3.12999 | gap 1, opp_overlap 1416654 1416655 CGCTCCCTTTGGTCG CTGGACGCTGCGCG ATAAAGC CGCGCAGCG-CCGG TTAGCTCTACGCTAG TERM 1214 1417423 - 1417413 - g 75 -8.2 -4.22346 | TAAATGGATGGAAAA CCCG ACT CGGG AGCTCGCAGAGATCG Rfer_1320 1416691 - 1417722 + | hypothetical protein Rfer_1321 1417765 - 1418559 + | hypothetical protein Rfer_1322 1419632 - 1418853 - | hypothetical protein Rfer_1323 1420624 - 1419629 - | homoserine kinase TERM 1215 1419816 - 1419774 - G 95 -13.4 -4.02132 | gap 1, overlap 1419775 CGTGAAATCCAGAAA CGCAGG-GCTGCTGCGCGC AGCAGG GCGGGCAGCAGCGCCCGCT CCGCGCTCTCGAGCG TERM 1216 1419815 - 1419775 - G 87 -16.9 -3.00797 | gap 1, overlap 1419774 GTGAAATCCAGAAAC GCAGG-GCTGCTGCGCGC AGCAGG GCGGGCAGCAGCGCCCGC TCCGCGCTCTCGAGC Rfer_1324 1420924 - 1420628 - | hypothetical protein TERM 1217 1420930 - 1420910 - G 75 -7.6 -4.2008 | gap 1, opp_overlap 1420910 1420911, overlap 1420912 AGAGAGGGTAAGAAA CAGGGCGAT TCGC ATCGCCC-G ATTGTAGAGCGGGCG TERM 1218 1420929 - 1420912 - G 77 -11.3 -3.69469 | opp_overlap 1420911 1420910, overlap 1420910 AGAGGGTAAGAAACA GGGCGAT TCGC ATCGCCC GATTGTAGAGCGGGC TERM 1219 1422335 - 1422325 - g 88 -6.8 -4.87665 | CGCCAGCCACAAAAA GCTG GGC CAGC ACGTCAAATACGACC TERM 1220 1422466 - 1422437 - g 76 -10.5 -3.74693 | CTGGAGGTGACCAAA CCCCACGGCCTGG CCAG CCTGGCCGAGCGG CACCTGGGACGCAGC Rfer_1325 1420985 - 1423858 + | DNA polymerase I TERM 1221 1424639 - 1424661 + G 70 -4 -4.58663 | opp_overlap 1424633, overlap 1424640 GTCACAGCAGCGCGG CTGACCCGTC CGC GGCGAGTCAA TTTTTGGCCCGTCGT Rfer_1326 1423867 - 1425483 + | alkaline phosphatase Rfer_1327 1426770 - 1425493 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1222 1425998 - 1425959 - G 86 -13.4 -3.53811 | GCCAGCGCGCTCAAA GCGGCGCCCATGTTGCGC AGCG GCACCACGCGGGCGCGGC CAATGTAGGCGGCAG TERM 1223 1426936 - 1426920 - H 70 -9.3 -3.76125 | opp_overlap 1426922 CGATTTCAATCCAAA CCCGGGG ATA CTCCGGG TGGCCCCGTCATTTC TERM 1224 1427268 - 1427258 - g 70 -4.6 -4.57073 | opp_overlap 1427261, overlap 1427260 CACCGCCTTGAAAAA GCGC TCG GCAC GCCGGCCAAGATTTA TERM 1225 1427399 - 1427422 + G 79 -12.4 -3.55761 | opp_overlap 1427391 ACCGAAACCGGGGCC GGCCAGTGGG GCTC CTCGCTGGCC TTTGCCGGCTCGCTC TERM 1226 1427858 - 1427846 - g 73 -9.1 -3.86346 | CGAGGTGGCCAGAAA CCACG CAT CGTGG CGGTTGAACCGGCGG Rfer_1328 1426985 - 1428355 + | tryptophan synthase subunit beta Rfer_1329 1429086 - 1428373 - | phosphoserine phosphatase SerB Rfer_1330 1429955 - 1429155 - | hypothetical protein Rfer_1331 1433540 - 1430013 - | transcription-repair coupling factor TERM 1227 1430374 - 1430385 + g 72 -2.2 -4.82901 | gap 1 TGGTTGGTATTGTTC GC-GG TGG CCAGC TTTTTGTAGAACGAG TERM 1228 1431551 - 1431514 - G 82 -9.1 -4.36914 | gap 1, opp_overlap 1431502, overlap 1431518 1431546 GTCGGTGCCAGAAAA GCCACCTGC-TTGCCGCC GGT GATGGCAATGAAGGCGGC GCGCAGGGCGACCTC TERM 1229 1431775 - 1431803 + g 73 -10.2 -3.66921 | opp_overlap 1431761, overlap 1431762 1431777 ATGTTGAGCAGCTCG GCGGCCGAGTCG CGCAC CTGTTCGGCCGC TTTGCGCTTGGCCTT TERM 1230 1432564 - 1432533 - G 100 -13.6 -4.56597 | opp_overlap 1432551 CTCGGTGCTTAAAAA CAGGGCTCCCGGTG GCAG CACCGGGCGCTCCG GGTCGCCTTGCACCA TERM 1231 1432689 - 1432677 - G 71 -9.1 -3.81539 | ACCCAAATAGTCAAA CACCG TGG CGGTG TCGTCAAAAAACAGC TERM 1232 1433582 - 1433544 - H 83 -6.1 -4.84017 | opp_overlap 1433549 1433550 1433552, overlap 1433552 AATGCGTGACAAAAA CGCCAA-CACCCTGCGCTT GTC AAGC-CAGGGTGATTTGGG GAGGATTCTAGAATG TERM 1233 1433550 - 1433575 + H 76 -12.7 -2.72461 | gap 1, opp_overlap 1433544 1433552, overlap 1433549 1433552 TGACAAAAACGCCAA CACCCTGCGCTT GTC AAGC-CAGGGTG ATTTGGGGAGGATTC Rfer_1332 1433609 - 1434865 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Rfer_1333 1435814 - 1434906 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1234 1436730 - 1436742 + G 73 -9.1 -3.93061 | overlap 1436725 TTGTGGAAGGCCCGC TGGCC GGG GGCCA TTTGGGTTTTGGCAT Rfer_1334 1436129 - 1437373 + | 2-nitropropane dioxygenase, NPD TERM 1235 1437478 - 1437492 + F 85 -11.4 -4.05875 | GCGGCCTGGCATTCG GGCAGC GTG GCTGCC TTTCAATTTTTTCAC TERM 1236 1437580 - 1437562 - f 71 -4.6 -4.62336 | opp_overlap 1437562 AGCGCATTGCAAAAA TTTTTCTC GTT GTGAAAAA TTAATTTCCACATTG TERM 1237 1437655 - 1437640 - f 84 -6.2 -5.08824 | GTTTGATTTAAAAAA TGTCTT CTAT AAGACA TAAGATCTATTTTTA TERM 1238 1437834 - 1437819 - g 70 -3.2 -4.62069 | overlap 1437833 GCCGCACTGGAAAAA GACTGG GCCA CCAACC CGCGCTGGAAGGGTA Rfer_1335 1437759 - 1439078 + | isocitrate lyase TERM 1239 1439139 - 1439102 - f 81 -8.3 -4.25104 | opp_overlap 1439090 1439088 1439104, overlap 1439103 GCGGGTCCAGGAAAA TGGGCCTGTGTCATCCA GTGA TGGGTGGCACAGGCCTT TTTTGTTAAACTTGC TERM 1240 1439138 - 1439103 - f 76 -11.8 -3.14848 | opp_overlap 1439090 1439088 1439104, overlap 1439102 CGGGTCCAGGAAAAT GGGCCTGTGTCATCCA GTGA TGGGTGGCACAGGCCT TTTTTGTTAAACTTG TERM 1241 1439104 - 1439137 + F 100 -19.7 -5.4756 | opp_overlap 1439103 1439102, overlap 1439090 1439088 GGGTCCAGGAAAATG GGCCTGTGTCATCCA GTGA TGGGTGGCACAGGCC TTTTTTGTTAAACTT TERM 1242 1439290 - 1439307 + G 100 -9.8 -5.78622 | opp_overlap 1439290 AAAAATCATAGTAGA GCGCGG CCGGTT CCGCGC TTTTTTTTGCCCTAC Rfer_1336 1439257 - 1441266 + | threonyl-tRNA synthetase TERM 1243 1441697 - 1441712 + G 70 -3.2 -4.65895 | opp_overlap 1441694 1441697 CTACAACATCAAGAT GCGC AACATCAA GCGC TTTTTGGCTGAAGGC Rfer_1337 1441422 - 1441937 + | translation initiation factor IF-3 TERM 1244 1442097 - 1442081 - f 70 -9.5 -3.38812 | overlap 1442079 TCGGGGCCAACAAGA CTGCAAA TAG TTTGCAG ACGCCTCACGAGCAC Rfer_1338 1442114 - 1442335 + | ribosomal protein L35 TERM 1245 1442429 - 1442449 + G 74 -11.1 -3.55191 | opp_overlap 1442428 1442427, overlap 1442427 1442432 AGCCCTTGCCAAAGG TTTCCGCGG TCG CCGCGGTAA TGTTTATCGCGTTGC TERM 1246 1442432 - 1442446 + G 70 -12.8 -2.90065 | opp_overlap 1442428 1442427, overlap 1442429 1442427 CCTTGCCAAAGGTTT CCGCGG TCG CCGCGG TAATGTTTATCGCGT rplT 1442361 - 1442720 + | 50S ribosomal protein L20 TERM 1247 1442772 - 1442799 + F 100 -12 -4.65895 | opp_overlap 1442767 1442772 ATGCAATAAAGACAA GGGCTAGAGCTT TAAA AGGCACTAGCCC TTTTTCAATGAAAAC TERM 1248 1442799 - 1442772 - f 80 -9.8 -3.97444 | opp_overlap 1442772, overlap 1442767 ATGCAATAAAGACAA GGGCTAGAGCTT TAAA AGGCACTAGCCC TTTTTCAATGAAAAC Rfer_1340 1442892 - 1443965 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 1249 1446222 - 1446234 + G 81 -4.7 -4.98061 | CCCACGGCGGGACTG CTGCG CAA CGCTG TTTTGTTTGATATCT pheT 1443990 - 1446422 + | phenylalanyl-tRNA synthetase subunit beta Rfer_1342 1446487 - 1446795 + | integration host factor, alpha subunit TERM 1250 1447034 - 1447091 + G 70 -12.8 -2.92777 | gap 2, opp_overlap 1447016 1447032 1447031, overlap 1447033 1447034 1447081 CGGCCCATGAAACGG CGCGGCAACCGTCGCTACTATCAGCACC ACGA GGTGCTGATGATT-CGGCGGAT-CCGCG ATTTGCTCTATGACC TERM 1251 1447155 - 1447140 - g 100 -9 -5.00616 | GGGCGCGCCAAAAAA TGCAGG AAAT CCTGCA GACCGAGCGTGACAA Rfer_1343 1446899 - 1447348 + | MerR family transcriptional regulator TERM 1252 1447467 - 1447509 + T 74 -4.2 -4.75174 | gap 1, opp_overlap 1447469 1447471 1447472, overlap 1447473 TCACACCGACCAATA AATACGGGGGTTAGC-AGC TTTATC GCTTGCTAACCCCTTTGTC TTTTTGGCTTCACTC TERM 1253 1447473 - 1447503 + T 100 -12 -4.56791 | gap 1, opp_overlap 1447472 1447471 1447469, overlap 1447467 CGACCAATAAATACG GGGGTTAGC-AGC TTTATC GCTTGCTAACCCC TTTGTCTTTTTGGCT Rfer_1344 1448349 - 1447519 - | UDP-2,3-diacylglucosamine hydrolase TERM 1254 1448047 - 1448033 - G 76 -7 -4.46212 | overlap 1448034 TCGCCCAGCAGAAAA TCGCGG TTG CCGCGC ATCAAAAAAATGGTC Rfer_1345 1448857 - 1448351 - | peptidylprolyl isomerase TERM 1255 1448639 - 1448657 + g 75 -2.3 -4.93877 | overlap 1448622 1448619 1448618 1448642 GTCAGCTTCGTTGAC GATGGGT TGGTC GCCCTTC TTTTCTTTCATGCCG Rfer_1346 1449460 - 1448861 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1256 1448927 - 1448948 + g 85 -12.9 -3.76186 | opp_overlap 1448923 1448922, overlap 1448924 GGAGCCAAAAGGGCC GGCCGGGCC GGTG GGCACGGCC TTGATTTTCTGGATC Rfer_1347 1450701 - 1449457 - | ErfK/YbiS/YcfS/YnhG TERM 1257 1449970 - 1449943 - G 76 -9 -4.07568 | opp_overlap 1449933 1449948 GGGGGGGCGCGAAAA CTGGCCGGGCGG CGTG CCGTGCAGCCAG ATACCGCCGCCTGTT TERM 1258 1450113 - 1450123 + g 75 -2.4 -5.00616 | TGGGCGTTCGCAAGT CACC CTC GGCG TTTTTTGACAGCCCG Rfer_1348 1451805 - 1450771 - | tetratricopeptide TPR_2 TERM 1259 1451240 - 1451278 + g 86 -12.2 -3.95324 | GCGACAGGCACTGCC GGGGCAGCGGCCAGCGCC GTG GTAGCGGGATGCTGCCCC TTGTTGTTGGGGCTG TERM 1260 1453159 - 1453187 + G 85 -2.4 -5.40072 | gap 1, overlap 1453140 GGCGCTGGGCGCCTG CCTT-GGCTTGCT GCAA GGCGACCCGAAGG TTTTTTTGCAGGCCG Rfer_1349 1451957 - 1453369 + | cysteinyl-tRNA synthetase Rfer_1350 1453415 - 1454065 + | HhH-GPD TERM 1261 1454143 - 1454105 - f 89 -13.2 -3.73336 | ACGCGAAGCGAACAA GCTCTGTCCCCAACTGCT TAG AGAACTTGGGGACAGACC GCAGTGACGCCAAGA Rfer_1351 1454195 - 1455172 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1262 1455279 - 1455300 + G 74 -5.7 -4.45738 | TGGCGGTGGCTTTCA GTGGCGGGG CCGA CTCCACCGC TTTGTTGTTGGCCTG TERM 1263 1455573 - 1455538 - g 80 -14.3 -3.01791 | gap 1, overlap 1455566 AGCCCTCGTGGAATA TGCGCAAGTGGCTATA AAAAG TATAGC-ACTTGCGCA GCATGCCGACGATCA Rfer_1352 1455212 - 1456174 + | tRNA(Ile)-lysidine synthetase-like Rfer_1353 1456187 - 1457455 + | aspartate kinase TERM 1264 1457650 - 1457624 - f 95 -14.5 -3.29829 | opp_overlap 1457624, overlap 1457613 CATAGCCCCTCAGAA GCCCCGCAAAC CGAGT GTTTACGGGGC TTTTTTGTTTTTTAA TERM 1265 1457624 - 1457650 + F 100 -12.3 -6.04324 | opp_overlap 1457613 1457624 CATAGCCCCTCAGAA GCCCCGCAAAC CGAGT GTTTACGGGGC TTTTTTGTTTTTTAA TERM 1266 1458607 - 1458589 - g 70 -4.4 -4.44797 | overlap 1458590 GCATGAAGATGAAAA CGCCGCAC ATC GTGCCGCT GTCCACCCAGGCGGT Rfer_1354 1457772 - 1458986 + | phage integrase TERM 1267 1459961 - 1459929 - T 76 -12 -3.09878 | gap 1, opp_overlap 1459951 1459955, overlap 1459932 1459946 1459947 GTCACGCACGGAATA CG-AGGCTACAGGCC AAAC GGCCTGCAGCCAGCG TGGCCGCTGGCTTCC TERM 1268 1459957 - 1459932 - T 90 -16.9 -2.76171 | opp_overlap 1459951 1459955, overlap 1459929 1459946 1459947 ACGCACGGAATACGA GGCTACAGGCC AAAC GGCCTGCAGCC AGCGTGGCCGCTGGC TERM 1269 1459955 - 1459972 + T 85 -12.7 -3.51232 | opp_overlap 1459932 1459929 1459947 1459946, overlap 1459951 GCCAAACGGCCTGCA GCCAGCG TGGC CGCTGGC TTCCTTTGCAGGAGA Rfer_1355 1461541 - 1460696 - | cobyrinic acid a,c-diamide synthase TERM 1270 1461208 - 1461198 - G 74 -5.4 -4.56775 | AGGTTGTCGGAAAAA TCGA ACC TCGA AGGAATAAGTTGCAG Rfer_1356 1462340 - 1461735 - | hypothetical protein Rfer_1357 1463276 - 1462479 - | hypothetical protein Rfer_1358 1463814 - 1463257 - | hypothetical protein Rfer_1359 1465439 - 1463811 - | hypothetical protein Rfer_1360 1466254 - 1465436 - | hypothetical protein TERM 1271 1465536 - 1465557 + g 76 -9.5 -4.07687 | CCTGGGGTCTGGTGG TCGTCATCG GCGG CGATGATGA TTTTGAGAGCGGGGT Rfer_1361 1466609 - 1466352 - | putative transcriptional regulator TERM 1272 1466778 - 1466806 + r 76 -10.3 -3.64682 | opp_overlap 1466780, overlap 1466772 1466780 TGCTCTCAGGCGTGA AAGTTGGGCGAAA ACT TTCCGCCCAACTA TTTCAAGATTTCATG TERM 1273 1466780 - 1466804 + r 84 -12.9 -3.39772 | opp_overlap 1466780, overlap 1466778 1466772 CTCTCAGGCGTGAAA GTTGGGCGAAA ACT TTCCGCCCAAC TATTTCAAGATTTCA TERM 1274 1466804 - 1466780 - R 95 -15.1 -3.55444 | opp_overlap 1466778 1466772 1466780 CTCTCAGGCGTGAAA GTTGGGCGAAA ACT TTCCGCCCAAC TATTTCAAGATTTCA Rfer_1362 1467597 - 1466809 - | hypothetical protein TERM 1275 1467149 - 1467171 + g 71 -6.2 -4.41348 | overlap 1467141 1467145 AAATGCCCATCCAGG CGCAGACAGA GCA TCTGGGTGCG TTTGTTTCCGCGCGC TERM 1276 1467384 - 1467437 + g 76 -8.8 -4.07568 | GTGTGTTGGCGCTTG GCGGGGTGTGTACCGGCATGC-TGCA TTCT TGCTCGCA-GCCGGGGCAGACCACGC TTTTGACAGGGCGCG Rfer_1363 1468850 - 1467594 - | hypothetical protein TERM 1277 1468527 - 1468545 + g 75 -8.1 -4.18018 | GGCGCGCTCGAAGTG GTTGGCC AGTGC GGCCAGC TTTTCGGTGAAGGCA TERM 1278 1468893 - 1468879 - H 71 -11.4 -2.91695 | overlap 1468876 1468891 TCGACGGTGAAATCA GCGTGG AAC CCACGC CATCGGACGCCTCTG TERM 1279 1469038 - 1469019 - g 79 -9.2 -4.2558 | overlap 1469021 GAGCCGGGACTAAAA GAGGCGGT GCGC ACCGCCGC TGAGCTGGAACACCG TERM 1280 1469036 - 1469021 - g 76 -10.4 -3.73042 | overlap 1469019 GCCGGGACTAAAAGA GGCGGT GCGC ACCGCC GCTGAGCTGGAACAC Rfer_1364 1468965 - 1469162 + | hypothetical protein Rfer_1365 1469159 - 1471252 + | N-6 DNA methylase TERM 1281 1471439 - 1471429 - g 78 -4.6 -4.7261 | ATGGAGGAAAAGAAA GGCG TTA CACC TGAAAGTTTCGATTC TERM 1282 1472057 - 1472047 - g 78 -4.6 -4.7261 | ATGGAGGAAAAGAAA GGCG TTA CACC TGAAAGTTTCGATTC Rfer_1366 1471267 - 1472535 + | putative type I site-specific restriction-modification system, S subunit TERM 1283 1472545 - 1472513 - f 71 -9.7 -3.53811 | GCTACGTGCCGCAAA CTTCAGAGGCGCAGG CCG CCTGAGCCCCAGAGG AAATACCCATGGCAC TERM 1284 1472767 - 1472777 + G 80 -3.2 -5.01732 | AGCAAGGGGTACGGC TCCG ACA TGGA TTTTTTGCAAGCCTT TERM 1285 1473019 - 1473033 + G 74 -3.4 -4.7497 | opp_overlap 1473016 1473015, overlap 1473016 AAGCGCATCAAGCGC CGCCCC GAC GTGGTG TTTTTCGTCAATGGG TERM 1286 1475155 - 1475141 - g 70 -4.2 -4.54821 | opp_overlap 1475140 AGTTGAAGGACAAAA TGGACG CGG CGTTCA AGGTTTTTTTCGATG Rfer_1367 1472554 - 1476423 + | type III restriction enzyme, res subunit Rfer_1368 1476420 - 1477040 + | hypothetical protein TERM 1287 1477329 - 1477358 + T 100 -8.6 -5.52909 | gap 1, opp_overlap 1477329 1477330, overlap 1477330 AATGACCCAAAAAAA T-GCCCTGGTTCC TCATT GGAGCCGGGGCTA TTTTTTTGGGTCTTG TERM 1288 1477357 - 1477329 - T 100 -5.8 -5.49729 | opp_overlap 1477329 1477330, overlap 1477330 AATGACCCAAAAAAA TGCCCTGGTTCC TCATT GGAGCCGGGGCT ATTTTTTTGGGTCTT TERM 1289 1477356 - 1477330 - T 73 -9.3 -3.8821 | opp_overlap 1477329 1477330, overlap 1477329 ATGACCCAAAAAAAT GCCCTGGTTCC TCATT GGAGCCGGGGC TATTTTTTTGGGTCT TERM 1290 1477330 - 1477356 + T 100 -13.7 -4.38666 | opp_overlap 1477330 1477329, overlap 1477329 ATGACCCAAAAAAAT GCCCTGGTTCC TCATT GGAGCCGGGGC TATTTTTTTGGGTCT Rfer_1369 1478756 - 1477446 - | glutamate-1-semialdehyde-2,1-aminomutase Rfer_1370 1479013 - 1479165 + | rubredoxin-type Fe(Cys)4 protein TERM 1291 1479282 - 1479299 + G 85 -4.1 -5.40072 | gap 1, opp_overlap 1479277 1479282 ACGACAGCAACACCA TC-CGGCG CAG TGCCGAGA TTTTTTTGAAGCAAG TERM 1292 1479486 - 1479503 + G 74 -5.5 -4.56597 | overlap 1479487 TGCCCATAGTCATGT TGTCGTC GAAA GACGGCG TTTTTGACAAAGCAC Rfer_1371 1479227 - 1479625 + | response regulator receiver domain-containing protein TERM 1293 1479897 - 1479884 - g 74 -6.7 -4.30576 | TGTGCACCAGTAAAA GTCTG GAGA CAGAC CGCGTATGGGGTATG Rfer_1372 1479625 - 1479990 + | response regulator receiver domain-containing protein TERM 1294 1480417 - 1480432 + G 100 -4.6 -5.75342 | GGTGCCGAGGCGCCA CCCGAG GGTT CTCCGG TTTTTTTTGGCACCC Rfer_1373 1480006 - 1480536 + | CheW-like protein TERM 1295 1480598 - 1480583 - g 74 -3.4 -4.7629 | overlap 1480584 TGATCAACTGAAAAA TTTTTT TGTC AAAAAA GTACCTGAGTCTGAT TERM 1296 1481308 - 1481279 - g 73 -4.2 -4.65747 | gap 1, opp_overlap 1481281 1481284, overlap 1481244 1481280 1481281 CAAGCTGCAACAAAA CGCCGCCGCCG CAGAGATAT CGGCGGCCG-G TCAGTTGGTGATGTT Rfer_1374 1480557 - 1482836 + | methyl-accepting chemotaxis sensory transducer TERM 1297 1484673 - 1484644 - g 71 -7.7 -4.07885 | overlap 1484667 GATGGGGCGTGAAAA GACGGGCGATCGG ACCG CAGAGAGCCCGTC GGTGCCTGGCGTTGA TERM 1298 1485549 - 1485567 + G 90 -5.3 -5.22039 | gap 1, opp_overlap 1485533 CCGCCGACGTTCAGC CTGAGCCT CAAC AGGC-CAG TTTTTTAGATTTGGA Rfer_1375 1482881 - 1488547 + | CheA signal transduction histidine kinases Rfer_1376 1490084 - 1488606 - | deoxyribodipyrimidine photolyase TERM 1299 1489444 - 1489416 - G 71 -8.8 -3.71363 | gap 1, overlap 1489418 1489419 AAAAAAATCTTCAAA CAGCC-GGGCGCC GCCC GACGCCCCGGTTG GAATCTTGAGTTGAC TERM 1300 1489434 - 1489418 - G 72 -11.5 -3.41445 | overlap 1489416 1489419 AAAAATCTTCAAACA GCCGGGC GCC GCCCGAC GCCCCGGTTGGAATC TERM 1301 1490012 - 1489976 - G 93 -7.2 -5.19879 | gap 1, opp_overlap 1489995 1489996, overlap 1489977 1489985 GGTCAAAGACAAAAA CGCAGTGAAGCTGGCGG CAGG CCGCCAGCGCCAG-GCA CAAGGCGGCGTTGTC TERM 1302 1490004 - 1489985 - G 82 -15 -3.14261 | opp_overlap 1489995 1489996, overlap 1489977 1489976 CAAAAACGCAGTGAA GCTGGCGG CAGG CCGCCAGC GCCAGGCACAAGGCG TERM 1303 1490215 - 1490233 + G 76 -10.2 -3.78775 | opp_overlap 1490215, overlap 1490216 1490231 ATGTGTGTGAGCATA GCCAGCGC GGT GCGCTGGG TTTGGTCATCAACAA TERM 1304 1490216 - 1490232 + G 75 -13.7 -2.87051 | opp_overlap 1490215, overlap 1490215 1490231 TGTGTGTGAGCATAG CCAGCGC GGT GCGCTGG GTTTGGTCATCAACA Rfer_1377 1490157 - 1490705 + | hypothetical protein TERM 1305 1491003 - 1491037 + G 90 -14.9 -3.53761 | opp_overlap 1491019, overlap 1491032 CCTTTCACCCGGACG GCGCCGCGCACGAGA ACACC TTGCGGGCGCGGCGC TTTGCGCGCCAGTTG Rfer_1378 1490717 - 1491187 + | Holliday junction resolvase YqgF Rfer_1379 1491187 - 1491684 + | phosphoribosyltransferase TERM 1306 1492431 - 1492443 + G 73 -4.8 -4.58685 | opp_overlap 1492405 1492404 CGGCGCGCTGCTGCC CTCC AGCCA GGAG TTTTTCAAGAGCTTT TERM 1307 1492573 - 1492592 + G 74 -7.2 -4.43012 | gap 1 GATGGCACACACAGC GTGATCCTG CCG CAGG-TCAC TTTTGGTATTGCCGT pyrB 1491688 - 1492650 + | aspartate carbamoyltransferase catalytic subunit TERM 1308 1493506 - 1493541 + G 71 -9.6 -3.76224 | gap 1, overlap 1493507 TCTCAACCCGCCCTT GCGCCA-GCAGCGCGAC CGC GACGCGCTGCGTGCCGG TTTGCTCGATGGCAC TERM 1309 1493507 - 1493540 + G 70 -13.1 -2.8552 | gap 1, overlap 1493506 CTCAACCCGCCCTTG CGCCA-GCAGCGCGAC CGC GACGCGCTGCGTGCCG GTTTGCTCGATGGCA Rfer_1381 1492652 - 1493959 + | amidohydrolase TERM 1310 1494870 - 1494892 + G 100 -16.2 -4.07568 | opp_overlap 1494857 AACTGGCGCCGAGCC CGGCGGAGGG CAA CCCGCCGCCG TTTTACCGCGGCGAG TERM 1311 1495559 - 1495535 - g 89 -4.9 -5.24129 | overlap 1495540 TGCCGCCATAAAAAA CAAAGCGGCGG TGC CGGCCAGTTTG GTGAGGTGATGCTGC Rfer_1382 1494086 - 1496140 + | elongation factor G Rfer_1384 1497593 - 1496463 - | 17 kDa surface antigen TERM 1312 1498062 - 1498100 + G 87 -10.8 -4.35524 | GAAAAAACCTGAGCT GCTGGCGCCGGCAGGGTC GCT GACCATGCTGGAGACTGC TTTTGCCTTTGGCGC TERM 1313 1498326 - 1498290 - g 95 -13.8 -4.11692 | gap 1, opp_overlap 1498289, overlap 1498277 GAGCTATGTGCAAAA CATGGCGCCGGTGATTG CGCT CAAGC-CCGACGCCATG ATCATGTCCGACCCC Rfer_1385 1498039 - 1499397 + | peptidase U32 Rfer_1386 1499407 - 1499832 + | class I peptide chain release factor Rfer_1387 1499958 - 1500548 + | NAD(P)H dehydrogenase (quinone) TERM 1314 1500574 - 1500556 - f 73 -10.2 -3.33348 | overlap 1500554 CGCAATAGGACAATA GCGGGTTC GGC GAGCCCGC CTGAATCGGCAAAAG Rfer_1388 1500602 - 1501552 + | GTP-binding Rfer_1389 1501840 - 1501547 - | ferredoxin Rfer_1390 1501939 - 1502865 + | phosphoesterase, DHHA1 Rfer_1391 1504282 - 1502903 - | ribulose bisphosphate carboxylase TERM 1315 1503831 - 1503809 - G 71 -6.3 -4.33417 | gap 2 GGTACCGACAATAAA GCCGC-C-GTC TTT GACCGGGCGGC CCAAAATGCGCCACA Rfer_1392 1505272 - 1504394 - | phosphoribulokinase Rfer_1393 1506448 - 1505354 - | inositol phosphatase/fructose-1,6-bisphosphatase TERM 1316 1506217 - 1506227 + g 100 -2.4 -5.76633 | opp_overlap 1506206, overlap 1506206 AGACCTCGTTGCTCA GCAC ATC GAGC TTTTTTTGTGTCTCG TERM 1317 1506812 - 1506839 + G 95 -14.8 -4.09117 | opp_overlap 1506812 GGAGGTGGCCAAGCA GCGCTCGGTCTC CAAG GCGGCCGAGCGC TTGTTTGTCACTCAG TERM 1318 1507050 - 1507038 - g 88 -6.9 -5.00616 | opp_overlap 1507049 GTGGGTTTGAAAAAA GGCCG TAT CGACC TGGCGGTGGTCAGTA Rfer_1394 1506753 - 1507670 + | LysR family transcriptional regulator TERM 1319 1508087 - 1508056 - g 81 -5 -5.00616 | overlap 1508059 GCTTGTGGCAAAAAA GAAGAAGCTCCCGC ACCT GCTGCAGCTCCTGC ACCTGCCGTCGTTGA TERM 1320 1508084 - 1508059 - g 76 -5.3 -4.61482 | overlap 1508056 TGTGGCAAAAAAGAA GAAGCTCCCGC ACCT GCTGCAGCTCC TGCACCTGCCGTCGT Rfer_1395 1508045 - 1508263 + | hypothetical protein TERM 1321 1508269 - 1508282 + T 100 -8.1 -6.19443 | opp_overlap 1508269 TTTGAGCTAAAAAAA CCACC GTCA GGTGG TTTTTTTTTGGTCTG TERM 1322 1508282 - 1508269 - T 100 -8.1 -5.47218 | opp_overlap 1508269 TTTGAGCTAAAAAAA CCACC GTCA GGTGG TTTTTTTTTGGTCTG Rfer_1396 1508664 - 1508320 - | hypothetical protein TERM 1323 1508506 - 1508524 + g 71 -6.7 -4.2828 | gap 1 GCAGCGTTTGTCATC CGGTCCAC TCTT GTGG-CCG TTTTCGTCGCTCAGG Rfer_1397 1508796 - 1510124 + | sodium/hydrogen exchanger TERM 1324 1510224 - 1510240 + G 95 -6.6 -5.46629 | opp_overlap 1510224 CTGTTTGCCAAGTTA TTGCCT CGTGA AGGCAA TTTTTTTGAAATGTT Rfer_1398 1510206 - 1510853 + | hypothetical protein Rfer_1399 1510866 - 1511876 + | phosphate transporter Rfer_1400 1512342 - 1511896 - | hypothetical protein Rfer_1401 1512876 - 1512352 - | GCN5-related N-acetyltransferase TERM 1325 1513031 - 1513054 + G 81 -5.3 -4.76312 | gap 2, overlap 1513034 GTCATCCGACTCGCC CGTGGCGGTGC AAAA GCAC-GCC-CG TTTTTCAATATTGTC Rfer_1402 1513010 - 1513261 + | ribosomal protein S16 TERM 1326 1513237 - 1513261 + F 83 -5.7 -4.83722 | GGAACGCCTGATCAG TCAAGCGGC CAAAAAA GCGGCTTGA TTTTATTGTGATGTT TERM 1327 1513378 - 1513395 + G 90 -5.5 -5.24129 | AAGTCCTGCCCTACA GCGCC GATCCCGA GGCGC TTTTTTCTGCCCGGC TERM 1328 1513552 - 1513566 + G 91 -7.8 -4.83169 | overlap 1513553 1513554 CTGCCGCTGAGGCTT TGCGCG GGG CGCGTA TTTTTGTGGCCCGCT TERM 1329 1513554 - 1513564 + G 71 -8.2 -4.03995 | overlap 1513553 1513552 GCCGCTGAGGCTTTG CGCG GGG CGCG TATTTTTGTGGCCCG Rfer_1403 1513272 - 1513835 + | 16S rRNA processing protein RimM TERM 1330 1514123 - 1514147 + G 74 -12.9 -3.14132 | CGCCTGCGGGCCAGA CGCTGAACCAT GCC ATGGTGCAGCG TTGGTCCGACAGCCA Rfer_1404 1513846 - 1514592 + | tRNA (guanine-N1)-methyltransferase TERM 1331 1515119 - 1515106 - g 85 -2.4 -5.33405 | CGTATCAAAGAAAAA TTGC CAGCCC GCAA GATCAAGACGGCTGC rplS 1514761 - 1515141 + | 50S ribosomal protein L19 TERM 1332 1515188 - 1515162 - f 86 -6.5 -5.00616 | opp_overlap 1515162 CTGCTCTGCAAAAAA GCCGTCCCA GCTGATGTT TGGGGCGGC TTTTTTGTTGTCTTT TERM 1333 1515162 - 1515188 + F 100 -9.4 -5.66338 | opp_overlap 1515162 CTGCTCTGCAAAAAA GCCGTCCCAG CTGATGT TTGGGGCGGC TTTTTTGTTGTCTTT TERM 1334 1515226 - 1515213 - f 78 -6.7 -4.56597 | GTCTTTTTTTAAAAA CATGG TTCC CCATG TCAATCAACTTGCCC Rfer_1406 1515224 - 1515925 + | NUDIX hydrolase Rfer_1407 1515951 - 1516937 + | hypothetical protein TERM 1335 1516917 - 1516937 + F 100 -7.5 -5.24531 | CTCGCGCTGTTGACA CTGGCCCGG CTG TTGGGCTAG TTTTTTATAAAAAAT Rfer_1408 1516984 - 1518096 + | histidinol-phosphate aminotransferase Rfer_1409 1518993 - 1518073 - | GTPase EngC TERM 1336 1518869 - 1518881 + g 70 -3.3 -4.63218 | overlap 1518870 AGGACGCGATCGCCT ACCAG CCC CTGGC TTTTCTTGCCGCGCG Rfer_1410 1519354 - 1519019 - | transcriptional coactivator/pterin dehydratase Rfer_1411 1520653 - 1519376 - | Ste24 endopeptidase TERM 1337 1519612 - 1519600 - G 71 -6.9 -4.24123 | TGAAGAAGCTGAAAA CCGGC AAC GCCAG CATGAACAACAACAG TERM 1338 1520169 - 1520134 - G 70 -4.6 -4.43844 | CCATCATCCACAAAA TCAGTGCGGCAATCGG CAGG CCAACGACGGCACCGA TCAGGCTTGATTTGA Rfer_1412 1520769 - 1521278 + | oligoribonuclease TERM 1339 1521312 - 1521332 + F 71 -9.7 -3.56568 | overlap 1521310 GGCATAATTCGCGGC TGCACTGCA AAC TGCCGTGCA TATTTGTACATCTCC TERM 1340 1522505 - 1522474 - g 71 -6.6 -4.23723 | gap 1, opp_overlap 1522465, overlap 1522457 1522464 1522475 CAACATCAGCCAAAA GCT-GTTCTGGGC TGACAAC GCCCAGCACAAGC GCAAATTGCTGGATC Rfer_1413 1521515 - 1523386 + | DEAD/DEAH box helicase-like TERM 1341 1523455 - 1523436 - T 74 -2.2 -5.08824 | overlap 1523439 GCGGCACTGAAAAAA GTATTTTT TAGT AAAAAAAC CTCGCTGCCATAACG TERM 1342 1523455 - 1523479 + T 100 -13.6 -6.32216 | opp_overlap 1523455 TTTTTAGTAAAAAAA CCTCGCTGCC ATAAC GGTAGCGAGG TTTTTTTTTGTCTAT TERM 1343 1523479 - 1523455 - T 100 -12.1 -5.52384 | opp_overlap 1523455 TTTTTAGTAAAAAAA CCTCGCTGCCA TAA CGGTAGCGAGG TTTTTTTTTGTCTAT TERM 1344 1523597 - 1523558 - T 86 -6.5 -5.00884 | gap 1, opp_overlap 1523569, overlap 1523562 1523569 AGCGGTGCCAAAAAA TCA-ACAAGCAAGCCCGG ACCAA CCGGGCTTTTTCGTTTGA GACTGGACGAATCTG TERM 1345 1523592 - 1523562 - T 71 -7.5 -3.93166 | opp_overlap 1523569, overlap 1523558 1523569 GTGCCAAAAAATCAA CAAGCAAGCCCGG ACCAA CCGGGCTTTTTCG TTTGAGACTGGACGA TERM 1346 1523585 - 1523569 - T 74 -10.8 -3.60839 | opp_overlap 1523569, overlap 1523562 1523558 AAAATCAACAAGCAA GCCCGG ACCAA CCGGGC TTTTTCGTTTGAGAC TERM 1347 1523569 - 1523585 + T 100 -10.8 -4.98531 | opp_overlap 1523562 1523558 1523569 AAAATCAACAAGCAA GCCCGG ACCAA CCGGGC TTTTTCGTTTGAGAC Rfer_1414 1524051 - 1523638 - | hypothetical protein Rfer_1415 1524309 - 1524064 - | hypothetical protein TERM 1348 1525063 - 1525053 - g 71 -8.2 -4.08064 | overlap 1525054 AATTTTTGCGCAAAA CGCC GTG GGCG CGCGACAAGGTGGAG Rfer_1416 1524848 - 1525150 + | hypothetical protein TERM 1349 1525393 - 1525417 + F 86 -7 -5.00616 | overlap 1525394 CGGCATTGATCACCC CGCGCTGCAG CCCGA CAGCAGCGCA TTTTTTGCAGCCCGA TERM 1350 1525394 - 1525416 + F 74 -10.5 -3.60048 | overlap 1525393 GGCATTGATCACCCC GCGCTGCAG CCCGA CAGCAGCGC ATTTTTTGCAGCCCG Rfer_1417 1525530 - 1525907 + | hypothetical protein Rfer_1418 1526417 - 1526052 - | hypothetical protein Rfer_1419 1526600 - 1526818 + | SlyX Rfer_1420 1528497 - 1526812 - | response regulator receiver domain-containing protein TERM 1351 1527774 - 1527760 - G 77 -11.4 -3.59979 | CTTGCCGAGTTCAAA CTGGGC GCG GCCCAG CACGTCATAGGCATC TERM 1352 1528604 - 1528575 - R 70 -2.9 -4.72272 | gap 1, opp_overlap 1528575 1528578, overlap 1528578 CCTGTTGATCAAAAA TAATGGCACTACGC TGA AC-CAGTGCCATTG TTTGGCCGGTGACAG Rfer_1421 1529265 - 1528654 - | thiopurine S-methyltransferase TERM 1353 1528721 - 1528741 + g 74 -6.8 -4.36914 | ACCCTGGCGTAGGGT GGCTTGGG CCAAA CCCAATCC TTTTGTGGGAACAAA Rfer_1422 1529404 - 1530882 + | exoribonuclease II Rfer_1423 1531367 - 1530912 - | hypothetical protein TERM 1354 1531612 - 1531648 + r 74 -8 -3.9534 | gap 1, overlap 1531613 ACCACCTTCGTCCCG GCTTTGACCAGC-CGCT GTCA GGCGAGCCGGTCAAAGG TTTGTGGCTGTCGCT TERM 1355 1531613 - 1531647 + r 71 -11.5 -2.96722 | gap 1, overlap 1531612 CCACCTTCGTCCCGG CTTTGACCAGC-CGCT GTCA GGCGAGCCGGTCAAAG GTTTGTGGCTGTCGC TERM 1356 1531712 - 1531675 - R 75 -12 -2.91264 | gap 1, opp_overlap 1531686 1531702 CGCTTTACCGAGATA GGCCCTTGCCATGATCC GCATT GG-CCACGGCCAGGGCC GTCATGTTGACCACG Rfer_1424 1533979 - 1531664 - | malic enzyme Rfer_1425 1534678 - 1534169 - | hypothetical protein Rfer_1426 1535705 - 1534797 - | hypothetical protein TERM 1357 1534946 - 1534933 - G 95 -2.3 -5.61596 | AGGTTGACAAAAAAA CCAGC CACG GATGG ACCGACCCTTGCTAC TERM 1358 1535145 - 1535131 - G 78 -2.1 -5.14563 | gap 1, overlap 1535132 TGCGCCAGCAAAAAA GC-CGA CCAG TCGCGC CGAATGTCAGGTGGC Rfer_1427 1537999 - 1535702 - | diguanylate cyclase/phosphodiesterase TERM 1359 1536538 - 1536515 - G 81 -5.2 -5.00616 | gap 1, opp_overlap 1536515 CTGCGGGTCAAAAAA GCACA-GGTCG TTG CGTCCGCGTGC TTTTACCTGGTACAT TERM 1360 1536821 - 1536853 + g 74 -12.7 -3.14211 | GCAGGTCTTCAAGCG CTGGGCAACCTGTTG CAG CAGCAGGTCGCCCAC TTCGTGCCCCAAGGT Rfer_1428 1539015 - 1537996 - | putative transport protein Rfer_1429 1539237 - 1540232 + | zinc-binding alcohol dehydrogenase Rfer_1430 1541954 - 1540308 - | Na/Pi cotransporter II-related TERM 1361 1541145 - 1541124 - G 71 -9.5 -3.85114 | opp_overlap 1541127, overlap 1541127 AAAGCCGAGATGAAA CAAGACAAC GCTG GTTGCCTTG TCGCCCAGCACGGGG Rfer_1431 1542489 - 1541980 - | lipoprotein signal peptidase TERM 1362 1542134 - 1542104 - G 89 -9.8 -4.44974 | gap 1 TGAAAGTCCAGAAAA TCGACCACGTAGC CAAACC GC-ACGCGGTCGA TGACGTTGCCAATGG TERM 1363 1542194 - 1542178 - G 71 -6.6 -4.1899 | GCAGGCCATGGAAAA GGCAAA CAGTC TTTGCC CGGCGTGCGACTTGA Rfer_1432 1545416 - 1542489 - | isoleucyl-tRNA synthetase TERM 1364 1542886 - 1542905 + gr 76 -6.4 -4.44667 | overlap 1542888 TCGAGCTCGACGTAG GTGTCCAT GAAG ATGGACTC TTTGTTGTTGACCGG TERM 1365 1545196 - 1545212 + gr 74 -3.5 -4.7497 | opp_overlap 1545198, overlap 1545198 AACTTCGGGTGACCA CAGCGGG CAG CGCGCAG TTTTTGGTAGATGCC Rfer_1433 1546359 - 1545391 - | bifunctional riboflavin kinase/FMN adenylyltransferase Rfer_1434 1546525 - 1547082 + | HNH endonuclease TERM 1366 1547342 - 1547356 + G 90 -5.6 -5.24531 | CTGCGCAGCCTGATT GGCAAG ACG CTGGCC TTTTTTGTCGAGCGT TERM 1367 1548862 - 1548891 + G 77 -7.7 -4.37658 | TCACGCCCGCATTGC GGCGCTGCCGTCA GAGT TGCCGCTGGCGCC TTTTCTGGCACCCTT Rfer_1435 1547258 - 1549573 + | hypothetical protein Rfer_1436 1549682 - 1550578 + | DNA ligase TERM 1368 1550675 - 1550663 - T 93 -4.8 -5.52909 | CAAGAGTTAAAAAAA GACC TGGCC GGTC ATGACGCAAGCACCT Rfer_1437 1550946 - 1550737 - | hypothetical protein TERM 1369 1550799 - 1550815 + g 72 -2.9 -4.80178 | overlap 1550791 1550800 AGGCCGAGATGCGAC CGTCTTC AAT GGAGACC TTTTGTTCCTTGATC TERM 1370 1551802 - 1551787 - g 88 -4 -5.47218 | CGGCATTGAAAAAAA TTGCAC TCAA GTACAA GGGCAAACCGGACGG Rfer_1438 1551612 - 1551956 + | cytochrome c, class I Rfer_1439 1552216 - 1552371 + | hypothetical protein TERM 1371 1552750 - 1552719 - f 76 -10.8 -3.64599 | gap 1, overlap 1552712 GGAGCAGAGCGCAAA GCCGC-TGCGCCG GTGAAGG CGGCGCCTGCGGC CCCAACGATTGCAGT Rfer_1440 1553180 - 1554526 + | C4-dicarboxylate transporter DctA Rfer_1441 1554718 - 1555206 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Rfer_1442 1555301 - 1555591 + | hypothetical protein Rfer_1443 1555703 - 1556482 + | hypothetical protein TERM 1372 1557109 - 1557121 + G 74 -5.5 -4.56597 | CCCGGTCGTGACGCT GCTGT ACT ACGGC TTTTTGCAAGCCAGC TERM 1373 1557279 - 1557308 + G 72 -2.2 -4.82901 | gap 3, overlap 1557280 TGTGTGTGATCGAAG C-GATGGC-G-GTGG CAC CCACTCTGCCGTCTG TTTTTATAGCCGCGG Rfer_1444 1556546 - 1557523 + | Alpha/beta hydrolase fold-3 Rfer_1445 1558437 - 1557670 - | hypothetical protein Rfer_1446 1558692 - 1559069 + | transport-associated Rfer_1447 1559518 - 1559207 - | hypothetical protein Rfer_1448 1559622 - 1560110 + | hypothetical protein Rfer_1449 1560595 - 1560269 - | hypothetical protein Rfer_1450 1561423 - 1560683 - | hypothetical protein Rfer_1451 1562489 - 1561656 - | hemerythrin-like, metal-binding Rfer_1452 1562900 - 1562703 - | hypothetical protein Rfer_1453 1563062 - 1563340 + | acylphosphatase TERM 1374 1563458 - 1563448 - T 76 -3.2 -5.1101 | TGACTACTCAAAAAA CCTG GCG CAGA ATTTGTTTGCGACCG TERM 1375 1563588 - 1563615 + T 85 -7 -4.9755 | gap 1, opp_overlap 1563578 1563581, overlap 1563581 1563580 AGGAAGCACCTAGAA GGGCTAGGGTTCG TTA TGAGCTCT-GCCC TTTTTCATTGTGTCT Rfer_1454 1563861 - 1563640 - | hypothetical protein Rfer_1455 1564367 - 1563906 - | cytochrome c, class II TERM 1376 1564470 - 1564510 + r 72 -3.9 -4.76802 | opp_overlap 1564478, overlap 1564466 1564478 GAGCCATCGCGGACA AGAAAAAAGCACCTAAGCC AAA GGCCTAAGTGCTTGATTCG TTTCTTGTTTTTGGC TERM 1377 1564502 - 1564478 - R 100 -12.9 -5.55769 | opp_overlap 1564478 1564470 1564466 GCGGACAAGAAAAAA GCACCTAAGCC AAA GGCCTAAGTGC TTGATTCGTTTCTTG Rfer_1456 1566713 - 1564803 - | diguanylate cyclase TERM 1378 1565700 - 1565679 - G 73 -5.1 -4.72029 | gap 1, overlap 1565681 GGCAAGGCAATAAAA GCGC-GCG AATTTGG CGCCGCGC CACCACCGCCAGTAG TERM 1379 1565827 - 1565792 - G 76 -9 -4.13767 | opp_overlap 1565797, overlap 1565796 1565797 1565810 1565813 GGCTGTAGGGCAAAA CAAAGGTCAGCGCC AACAGCAG GGCGCTGACTGTTG CCAGTGCCCGTGTCA TERM 1380 1565823 - 1565796 - G 81 -8.4 -4.67048 | opp_overlap 1565797, overlap 1565792 1565797 1565810 1565813 GTAGGGCAAAACAAA GGTCAGCGCC AACAGCAG GGCGCTGACT GTTGCCAGTGCCCGT TERM 1381 1565822 - 1565797 - G 72 -11.9 -3.39506 | opp_overlap 1565797, overlap 1565796 1565792 1565810 1565813 TAGGGCAAAACAAAG GTCAGCGCC AACAGCAG GGCGCTGAC TGTTGCCAGTGCCCG TERM 1382 1566174 - 1566159 - G 71 -6.1 -4.36914 | GTTGGTCTCATAAAA CTGGG TCGGAT CCCAG ATTCGAAAAGGTGCT TERM 1383 1568164 - 1568151 - g 83 -2.3 -5.24129 | GTTTTTGAGAAAAAA GAGAC TCCA GCCCC CGTCGAATATTCGCA Rfer_1457 1566918 - 1568861 + | DNA polymerase III, subunits gamma and tau TERM 1384 1569039 - 1569022 - g 100 -8.4 -5.30189 | GACAACATGAAAAAA GCCCAG GACGAG CTGGGC AACGTCGAAGTCACC Rfer_1458 1568953 - 1569285 + | hypothetical protein recR 1569292 - 1569882 + | recombination protein RecR Rfer_1460 1569983 - 1571029 + | twin-arginine translocation pathway signal TERM 1385 1571079 - 1571107 + T 76 -9.5 -3.91984 | overlap 1571045 ATCTGGATTAAGGTT GTTTGGCAAGCCG GGT CGGCTTGCTCACC TTGTTTCGGGCCTGT Rfer_1461 1572600 - 1571071 - | lytic transglycosylase, catalytic TERM 1386 1571809 - 1571827 + g 81 -5.3 -4.77157 | gap 1 CCGTGTGTTGAACGC CATCG-GG TTGG CCACGATG TTTTTGATGGCTTGC Rfer_1462 1573322 - 1572600 - | hydroxyacylglutathione hydrolase TERM 1387 1572783 - 1572810 + g 79 -15.7 -2.71364 | opp_overlap 1572808 CGAACGCAAGGCTTC GGCTTTGACCG TGTAGT CGGTCAAAGCC TGGTTGACGGGCTCC Rfer_1463 1573453 - 1574154 + | hypothetical protein TERM 1388 1574452 - 1574436 - g 95 -13.7 -4.07568 | CCCGCGGCTGGAAAA CGGCTGC CAA GCAGCCG GTGAAAAATGTCGAC Rfer_1464 1574165 - 1574614 + | ribonuclease H Rfer_1465 1576109 - 1574637 - | anion transporter TERM 1389 1575229 - 1575212 - G 75 -14.1 -2.84325 | overlap 1575207 1575209 CGGGGCCAAACAGCA GGGCCGG CACG CCGGCCC ACATCAGCAGCATCA TERM 1390 1575323 - 1575337 + g 70 -4.2 -4.54727 | TGTGTGCCAGCTCCT TGGCGT TGG GCGTCA TTTTGATTTCCGGCG TERM 1391 1576242 - 1576232 - R 70 -3.2 -4.7497 | CTCAGCCATCAAAAA GGAA TTT CTCC TCTCAACTTTTTTGC Rfer_1466 1577674 - 1576313 - | MoeA-likedomain-containing protein TERM 1392 1576482 - 1576514 + g 76 -5.3 -4.60041 | overlap 1576483 TCAGGTGTGGTGCTG ACCACGCCGCGCTGG TAC TCGGTGCGGCCGGGC TTTTTGCGGATGGCT mobA 1578306 - 1577671 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 1393 1577758 - 1577771 + g 82 -9.5 -4.36914 | opp_overlap 1577758 ATGGGGCAAATCAAA CGGCG CCAC CGCCG TTTTGTGCAACGCAG TERM 1394 1577771 - 1577758 - G 76 -9.5 -4.06055 | opp_overlap 1577758 ATGGGGCAAATCAAA CGGCG CCAC CGCCG TTTTGTGCAACGCAG moaA 1579474 - 1578308 - | molybdenum cofactor biosynthesis protein A Rfer_1469 1579635 - 1580411 + | putative signal transduction protein Rfer_1470 1580999 - 1580427 - | hypothetical protein Rfer_1471 1581708 - 1581082 - | hypothetical protein TERM 1395 1581292 - 1581281 - G 89 -7.2 -5.01732 | opp_overlap 1581281 1581279 1581282 AAGTCGGCCAAAAAA CCGC CAGT GCGG TCTTTCTGGATGCGC TERM 1396 1581789 - 1581816 + r 76 -12.8 -2.75963 | opp_overlap 1581795, overlap 1581795 GTCGGTGGCACCCAT AAAAAAGCCCGC GTCA GCGGGCTTTTTG GTTTCGGGTCGGACT TERM 1397 1581810 - 1581795 - R 100 -11.8 -5.28176 | opp_overlap 1581795 1581789 GGCACCCATAAAAAA GCCCGC GTCA GCGGGC TTTTTGGTTTCGGGT TERM 1398 1581795 - 1581810 + r 100 -11.8 -4.99134 | opp_overlap 1581795, overlap 1581789 GGCACCCATAAAAAA GCCCGC GTCA GCGGGC TTTTTGGTTTCGGGT hppA 1583899 - 1581830 - | membrane-bound proton-translocating pyrophosphatase TERM 1399 1584525 - 1584548 + G 80 -3.1 -5.02074 | gap 1 GATGACCTGAGCCCG GTGCGC-CTG AAGAC CATTGCGCAC TTTTTTGAGCACTAC Rfer_1473 1584138 - 1584674 + | inorganic diphosphatase TERM 1400 1584766 - 1584732 - T 78 -5.7 -4.79352 | gap 1, opp_overlap 1584736 1584737, overlap 1584735 1584736 1584737 GTAGCTATAATAAAA GAAGCGCCTGCCGGTG GTAA CAC-GGCAGGCATTTT TCTGGGCGCAGGCTC TERM 1401 1584763 - 1584735 - T 79 -7.4 -4.49377 | gap 1, opp_overlap 1584736 1584737, overlap 1584732 1584736 1584737 GCTATAATAAAAGAA GCGCCTGCCGGTG GTAA CAC-GGCAGGCAT TTTTCTGGGCGCAGG TERM 1402 1584762 - 1584736 - T 71 -10.9 -3.28542 | gap 1, opp_overlap 1584736 1584737, overlap 1584735 1584732 1584737 CTATAATAAAAGAAG CGCCTGCCGGTG GTAA CAC-GGCAGGCA TTTTTCTGGGCGCAG TERM 1403 1584736 - 1584762 + T 93 -8.7 -4.82901 | gap 1, opp_overlap 1584736 1584735 1584732 1584737, overlap 1584737 CTATAATAAAAGAAG CGCCTGCCGGTG GTAA CAC-GGCAGGCA TTTTTCTGGGCGCAG TERM 1404 1584737 - 1584761 + T 81 -12.2 -3.49419 | gap 1, opp_overlap 1584736 1584735 1584732 1584737, overlap 1584736 TATAATAAAAGAAGC GCCTGCCGGTG GTAA CAC-GGCAGGC ATTTTTCTGGGCGCA TERM 1405 1584761 - 1584737 - T 72 -12.2 -2.5604 | gap 1, opp_overlap 1584737 1584736, overlap 1584736 1584735 1584732 TATAATAAAAGAAGC GCCTGCCGGTG GTAA CAC-GGCAGGC ATTTTTCTGGGCGCA Rfer_1474 1585577 - 1584780 - | hypothetical protein TERM 1406 1585535 - 1585492 - G 76 -5.3 -4.58395 | gap 3, opp_overlap 1585498, overlap 1585494 CCCAGTTCCCAAAAA GC-CCGGAACTCCAACGCCATG AGC CA-GGCGCTAG-GCGCCGGCGC GTTGGCGCTTGCAGG TERM 1407 1585547 - 1585558 + g 85 -2.2 -5.32565 | overlap 1585498 GCGCGTTGGCGCTTG CAGG AGTC TCTG TTTTTTGCTTGGTTG Rfer_1475 1587109 - 1585613 - | hypothetical protein TERM 1408 1586817 - 1586835 + g 85 -6.6 -4.74103 | overlap 1586818 GCGCAGACCGCCTCA GCCTGGCG CAA CGTCAGGA TTTTTCCCTTCACCG TERM 1409 1586818 - 1586834 + g 70 -10.1 -3.4398 | overlap 1586817 CGCAGACCGCCTCAG CCTGGCG CAA CGTCAGG ATTTTTCCCTTCACC Rfer_1476 1587182 - 1587739 + | CheW protein TERM 1410 1587751 - 1587765 + T 71 -4.3 -4.63527 | overlap 1587749 CTGAGCAAGATTGCC TCATC GGGGG GATGA TTTTTGGCATGCTAC TERM 1411 1587881 - 1587908 + T 100 -16.4 -4.56607 | opp_overlap 1587881 CACCAGTAAAGACAA GGGTTAGCACGT TATC GCGTGCTAACCC TTTTGTCATTGGTGC TERM 1412 1587908 - 1587881 - T 100 -15.7 -3.87323 | opp_overlap 1587881 CACCAGTAAAGACAA GGGTTAGCACG TTATCG CGTGCTAACCC TTTTGTCATTGGTGC TERM 1413 1587931 - 1587946 + T 86 -4 -5.30616 | gap 1, opp_overlap 1587931, overlap 1587931 ATTGGTGCATCAATA CC-CGTT TGC AACGCGG TTTTTATTTGGATAA Rfer_1477 1589430 - 1588006 - | FAD linked oxidase-like TERM 1414 1589270 - 1589248 - G 74 -11.2 -3.53012 | opp_overlap 1589256 CGTGCTTTCGGCAAA CACCACGGCC GCT GGCGGCGGTG CTTCAAAAGACGACT Rfer_1478 1589544 - 1590122 + | cobalamin adenosyltransferase TERM 1415 1590239 - 1590218 - g 72 -12.9 -3.02144 | GTATTGCCGTTAACA CCGGCGGCG GTGA CGCCCCCGG CCTCAACGCCGTCAT TERM 1416 1591069 - 1591112 + G 71 -6.4 -4.25104 | gap 1 CTGGGGCATTTGCTG CGCGGTGGCAGCCCGACCGCC TTC GACCGGCTGGCGGCC-CTGCG TTTTGGTGCGGCAGC Rfer_1479 1590184 - 1591293 + | 6-phosphofructokinase Rfer_1480 1593063 - 1591450 - | methyl-accepting chemotaxis sensory transducer TERM 1417 1592148 - 1592162 + g 75 -7.8 -4.1822 | TGGAGTTGAGCTCTT CCATCG ACG CGGTGG TTTCTTCCAGTGAAC TERM 1418 1593173 - 1593138 - R 100 -13.3 -6.19443 | gap 1 TACAGCAAAAAAAAA CGGGCAGCGGCCAGGC GCAAA GCCTGAACG-TGCCCG TTGACACTCGATCAC Rfer_1481 1594486 - 1593203 - | TRAP dicarboxylate transporter- DctM subunit Rfer_1482 1595157 - 1594483 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1419 1594830 - 1594811 - G 79 -8.6 -4.52589 | gap 1 TTGTCCCAGACAAAA GTGG-CACC CAG GGTGGCCAC AATGCCGGTAAACAG Rfer_1483 1596205 - 1595210 - | TRAP dicarboxylate transporter, DctP subunit TERM 1420 1595377 - 1595393 + g 78 -6.5 -4.71426 | overlap 1595369 CGCTCTTCTTCACGC CGTCAAG TGC CTTGTCG TTTTCTTCCTGGGCA TERM 1421 1595550 - 1595562 + g 80 -3.4 -5.1287 | ATCGAGAGATGCTTC TGCA CTTCA TGCA TTTTTTGCGTATAGA TERM 1422 1596245 - 1596234 - R 77 -4.4 -4.98468 | ATAATAAAAAAACAA CACT AACC AGTG AAGATTAACGCCCGC Rfer_1484 1597344 - 1596298 - | TRAP dicarboxylate transporter, DctP subunit TERM 1423 1596455 - 1596478 + g 71 -6.7 -4.2349 | gap 1, overlap 1596457 GTGGTGCCCGCTGCA CG-CAGGGCC GCCAG GGCCTTGTCG TTTTGGGTGTCGGCA TERM 1424 1596521 - 1596509 - G 76 -9.1 -4.08945 | opp_overlap 1596513, overlap 1596513 ATCAGGTTGCCAAAA GCGAG CGC CTCGC GCAGAGCCTGCCCGA TERM 1425 1596744 - 1596766 + g 73 -13.4 -2.79796 | opp_overlap 1596730, overlap 1596746 ACGGGAGCGTGACCG GATGCGCGCC CAG GGCACGCATC TGTGCTGCAATCACG TERM 1426 1597589 - 1597567 - g 74 -12.6 -3.26712 | overlap 1597563 1597565 AGGCCGAAGAAGAGA CGCGCCGTCG CGC CGCCGACGCG CAGTGGCTGGAGCAG TERM 1427 1598725 - 1598712 - g 78 -2.3 -5.1356 | CTGCAGCAAGAAAAA CTCGA AGCG TCGGG GCGTCTGGTGGCCGT TERM 1428 1599362 - 1599374 + G 73 -4.7 -4.58585 | GCGTGACCCCGAGTT GGGCG GTG CGCGC TTTGTTGTTTGGCTG Rfer_1485 1597428 - 1599458 + | multi-sensor signal transduction histidine kinase TERM 1429 1599511 - 1599568 + G 89 -10.3 -4.56597 | gap 1, overlap 1599512 CATTCGGGATGGACT GGCCTGGCTGTTCGACTCGCGCGGCTAC GTG GCAGCCACGTGGGACG-GCGGCCCGGCG TTTTTGGACGCGGCG TERM 1430 1599512 - 1599567 + G 81 -13.8 -3.33744 | gap 1, overlap 1599511 ATTCGGGATGGACTG GCCTGGCTGTTCGACTCGCGCGGCTAC GTG GCAGCCACGTGGGACG-GCGGCCCGGC GTTTTTGGACGCGGC Rfer_1486 1599455 - 1600099 + | two component LuxR family transcriptional regulator Rfer_1487 1600244 - 1601548 + | putative transporter signal peptide protein Rfer_1488 1601705 - 1601971 + | ribosomal protein S15 TERM 1431 1602019 - 1601992 - f 95 -14.2 -3.35298 | opp_overlap 1601992, overlap 1601985 GAATCAAATGATGAA CGCCTGAGTTAG GTTC CTAGCTCAGGCG TTTTTTACTTCGGAG TERM 1432 1601992 - 1602019 + F 100 -16.4 -5.26875 | opp_overlap 1601992 1601985 GAATCAAATGATGAA CGCCTGAGTTAG GTTC CTAGCTCAGGCG TTTTTTACTTCGGAG TERM 1433 1602988 - 1602967 - g 77 -11.5 -3.66772 | overlap 1602957 CCAAATTCGCAACAA GCAGGCCCG TACC CGCGCCTGC CGCGAAGCTTACGCT TERM 1434 1604265 - 1604288 + G 71 -8.8 -3.80516 | gap 1 TGTTGCTGGATCGTC CGGGC-CAGGG CGG CCCTGAGCACG TTTGATGGCTTGCTT Rfer_1489 1602173 - 1604293 + | polynucleotide phosphorylase/polyadenylase Rfer_1490 1604359 - 1605360 + | zinc-binding alcohol dehydrogenase Rfer_1491 1605357 - 1606100 + | triosephosphate isomerase secG 1606138 - 1606491 + | preprotein translocase subunit SecG Rfer_1493 1606697 - 1607110 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Rfer_1494 1607115 - 1607594 + | NADH-quinone oxidoreductase, B subunit Rfer_1495 1607605 - 1608213 + | NADH (or F420H2) dehydrogenase, subunit C Rfer_1496 1608221 - 1609474 + | NADH dehydrogenase subunit D Rfer_1497 1609471 - 1609959 + | NADH-quinone oxidoreductase, E subunit Rfer_1498 1609959 - 1611335 + | NADH-quinone oxidoreductase, F subunit TERM 1435 1611531 - 1611569 + G 70 -12.5 -2.93073 | opp_overlap 1611527 1611526, overlap 1611528 TGGAAAAAATGCCGA AGCCCATGC-CAGCCTGCG CTA CGCAGGTTGCGCA-GGGCA TGATTGTTCGCACCA TERM 1436 1613197 - 1613213 + G 71 -6.5 -4.28375 | opp_overlap 1613197 1613196 GCCCTTGGGCGAAAC CCGTCCA GCC TGGAAGG TTTTGCGTGTGTTAG Rfer_1499 1611332 - 1613497 + | NADH dehydrogenase subunit G Rfer_1500 1613494 - 1614576 + | respiratory-chain NADH dehydrogenase, subunit 1 Rfer_1501 1614589 - 1615122 + | NADH dehydrogenase subunit I TERM 1437 1615257 - 1615268 + G 70 -3.6 -4.71223 | TTACTTCTCGCAATC CGGT GTAT GCCG TTTTGTATCTTGTAC Rfer_1502 1615175 - 1615834 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 TERM 1438 1615905 - 1615924 + G 70 -3.6 -4.71426 | GATTGGTATTTTTCT CAATCGGA AGAA TTTGATTG TTTTATTGATGGCGA Rfer_1503 1615831 - 1616139 + | NADH-ubiquinone oxidoreductase, chain 4L TERM 1439 1616986 - 1617000 + G 70 -4.2 -4.44046 | GGGTATTTTTATGGT GGCG CGTATGT CGCC TTTGTTTGAACTCAG TERM 1440 1617767 - 1617721 - g 71 -6.5 -4.15106 | CATTAATCTGGAAAA GCACGCGGCCATGGAAGAAAT GGCCA AGCTGTTCCACGGCCCGGTGC AGATGGCTTTGCACG Rfer_1504 1616144 - 1618159 + | proton-translocating NADH-quinone oxidoreductase, chain L TERM 1441 1619318 - 1619338 + G 74 -3.1 -4.72497 | overlap 1619320 TGCGATGGCCAATTG CGGGTTGCC AGG GACAGCCGG TTTTGTTGGTGAGTG TERM 1442 1619407 - 1619418 + G 76 -5.8 -4.60889 | overlap 1619387 TGGGTTTTGCCGCTG CCAG TTCG CTGG TTTTTGGCGCTGCTT Rfer_1505 1618173 - 1619648 + | proton-translocating NADH-quinone oxidoreductase, chain M TERM 1443 1619856 - 1619880 + G 89 -12.1 -4.13282 | TGCAGGCGAGTTACG CCGTTGGCGGT GTG ACCGTCTACGG TTTTGGCAATATGGT TERM 1444 1620869 - 1620882 + G 78 -4.5 -4.83169 | gap 1, overlap 1620854 TCATTGGCTGGCATC CCG-CC CAT GGTCGG TTTTTATGCCAAGCT Rfer_1506 1619687 - 1621174 + | NADH dehydrogenase subunit N TERM 1445 1621242 - 1621263 + F 90 -5.1 -5.27335 | overlap 1621226 1621243 TGCTCGCAAGCGTTG AGCAGTGTT GGTT GACACTGCC TTTTTGTTTGGCGCG TERM 1446 1621345 - 1621357 + G 76 -5.5 -4.63932 | opp_overlap 1621333 TCAGCAGTGAAGAAT TGGTC AAG GGCCA TTTTCTTCACGCGTA Rfer_1507 1621299 - 1621904 + | NUDIX hydrolase Rfer_1508 1621912 - 1622361 + | hypothetical protein TERM 1447 1623933 - 1623897 - g 80 -4.1 -5.055 | GCAAGTGCCAAAAAA CCTGGATCTGCGAGCCC TGG AGGCACGCATTGCCCGG CTGGCGCAGCGCTGG TERM 1448 1624976 - 1624952 - g 82 -12.2 -3.64822 | overlap 1624954 ATTTCCGCACTGAAA TACTGGGCCT GGTTA AGGCCCAGCA CGTCAAAAATACAGT TERM 1449 1624974 - 1624954 - g 76 -12.6 -3.40597 | overlap 1624952 TTCCGCACTGAAATA CTGGGCCT GGTTA AGGCCCAG CACGTCAAAAATACA TERM 1450 1625541 - 1625555 + G 76 -7.1 -4.44046 | overlap 1625527 TGTTGCGCTCACCTT CGCTG AGCGC CAGCG TTTGTTTGCGCTGCC TERM 1451 1625759 - 1625786 + G 72 -12 -3.40299 | opp_overlap 1625758 1625757 ACCTCATCTACAACG GCGGCATTGGCA CCTA TGTCAAGGCCGC TTATGAGTCTCATGC Rfer_1509 1622497 - 1627269 + | NAD-glutamate dehydrogenase Rfer_1510 1627557 - 1627288 - | hypothetical protein Rfer_1511 1627783 - 1627586 - | hypothetical protein TERM 1452 1627670 - 1627681 + g 72 -2.2 -4.72986 | CTGTTGCGCAATTTT GGCA TTGT TGTC TTTTTCCTGAGCCTC Rfer_1512 1629671 - 1627836 - | ABC transporter related TERM 1453 1629411 - 1629359 - G 93 -8.4 -5.00616 | gap 2, opp_overlap 1629400 1629401, overlap 1629397 GCGCCGCCGAAAAAA GGCCCAGCGCCA-C-CGCTACCGC AAACAGG GCGACAAAGTGCTGGCGCAGGGCC ATCATCTGCGCGCCT TERM 1454 1629491 - 1629481 - G 74 -6.8 -4.30448 | overlap 1629485 AAAGCCAACGGAAAA GCCA GCG TGGC CGTCGCTGCCAGCAC TERM 1455 1629653 - 1629633 - G 70 -3.9 -4.66609 | CAGTTTAGCCAAAAA GCGCATAAA CCA TTGCTGCGC CAAACAACGCCTTGA Rfer_1513 1629704 - 1630291 + | MarR family transcriptional regulator TERM 1456 1630790 - 1630745 - g 100 -21.1 -3.61398 | gap 1 TTTTTTTGGCAAGAA CCGCGCTGCACTCGCAGCTGCC CTG GGCAGC-GCGCGCGCCGCGCAG GCGGATGCCGATGCG Rfer_1514 1630281 - 1631732 + | RND efflux system, outer membrane lipoprotein, NodT TERM 1457 1631885 - 1631901 + G 79 -8.7 -4.18018 | overlap 1631867 TGGGCCGCCTACGAC TGGTTGG TGG CCAGCCA TTTTGAATCCACCGA Rfer_1515 1631762 - 1632979 + | secretion protein HlyD TERM 1458 1633741 - 1633761 + G 81 -5.4 -4.85599 | TCGGCTTGGGGTTGG TGGCGC TGGTGGGGT GCGCCA TTTTTCTGGCCTGGG TERM 1459 1634446 - 1634478 + G 77 -3.4 -4.93296 | overlap 1634447 AGGCCTATATGTTGG CCATTGACGATGTA TTTTT TGCATCGGCGATGA TTTTTCTGCTGCTGA Rfer_1516 1633008 - 1634591 + | EmrB/QacA family drug resistance transporter Rfer_1518 1635716 - 1634859 - | CoA-binding Rfer_1519 1637287 - 1636109 - | putative AttH TERM 1460 1636934 - 1636952 + g 78 -6.6 -4.62069 | TGATGCGCGGGCAAT GCGCTGGT CGT GCCAGAGC TTTTTGCCCTGCACA Rfer_1520 1638338 - 1637295 - | pyridoxal-5'-phosphate-dependent enzyme, beta subunit Rfer_1521 1639122 - 1638346 - | ABC transporter related TERM 1461 1638992 - 1638979 - G 70 -3.7 -4.62783 | opp_overlap 1638957 GATGCAGCGCAAAAA CGTGC TTTT GCCCG AACCTGAACTGCCGA TERM 1462 1639166 - 1639155 - R 91 -7.2 -5.10461 | GGCAGGGAACAAAAA GGGC TCAG GCCC CCAGCAACTCGCCGG Rfer_1522 1640289 - 1639159 - | succinylglutamate desuccinylase/aspartoacylase Rfer_1523 1641023 - 1640310 - | amino acid ABC transporter permease Rfer_1524 1641712 - 1641023 - | amino acid ABC transporter permease TERM 1463 1641175 - 1641131 - G 78 -2 -5.06414 | gap 1, opp_overlap 1641141 1641151, overlap 1641132 1641134 1641140 1641141 GGCGGTGAATAAAAA GTAGGCAAAC-GGTGAGCGCG TGGC CGCGCTGGCCTGCTTGGCCAG ATAGGTCATTTCCTG TERM 1464 1641324 - 1641346 + g 77 -11.2 -3.57144 | opp_overlap 1641324 CGGCCCATGCCAAAA GCCCAGGCGG CTT CTGCCTGGCC TTTGGGAATGGCCAG TERM 1465 1641346 - 1641324 - G 76 -9 -4.13767 | opp_overlap 1641324 CGGCCCATGCCAAAA GCCCAGGCGG CTT CTGCCTGGCC TTTGGGAATGGCCAG Rfer_1525 1642504 - 1641737 - | extracellular solute-binding protein TERM 1466 1642067 - 1642081 + g 85 -5.6 -5.11063 | overlap 1642069 ACCCACGGTCTTGAG TTCGCC CAT GGCGTA TTTTTCTTGCGTGCT TERM 1467 1642069 - 1642079 + g 75 -8.2 -4.17914 | overlap 1642067 CCACGGTCTTGAGTT CGCC CAT GGCG TATTTTTCTTGCGTG TERM 1468 1642541 - 1642523 - H 100 -5.9 -5.49809 | CAAATCCTAAAAAAA GCCGCAG ACTGG CCACGGC GAGGTAAAAATGAAC TERM 1469 1643763 - 1643744 - g 71 -8.6 -4.11216 | gap 1 TGCCCATCTGCAAAA CATCAGCGC GGT GCGC-GATG CCCAGGGCCAGACCC TERM 1470 1644167 - 1644128 - g 85 -18.6 -2.62616 | gap 1, opp_overlap 1644150 1644151 CGATCTGGCAGACGA GGCGGCCTGCAAGCCGATG CTG CACC-GCCTGCTGGCCGCC ATCGCCCAGCCGGCG Rfer_1526 1642833 - 1644347 + | diguanylate cyclase with PAS/PAC sensor TERM 1471 1644421 - 1644435 + T 100 -8.6 -5.53288 | AGCCTGCCTGACTAG CTATCC TAT GGATAG TTTTTTTGGGTTGAC Rfer_1527 1647086 - 1644483 - | hypothetical protein TERM 1472 1644960 - 1644902 - G 81 -14.1 -3.34894 | gap 2, opp_overlap 1644957, overlap 1644889 1644903 AACTGCGGTCAAAGA TGCGCAGCGAGGTGACTCGAATCTGGC TGGCGGT GCCAAATTCGAG-CAACTCGCTG-GCG TTGCCCTGGCTGCCA TERM 1473 1644959 - 1644903 - G 83 -17.6 -2.60615 | gap 2, opp_overlap 1644957, overlap 1644889 1644902 ACTGCGGTCAAAGAT GCGCAGCGAGGTGACTCGAATCTGGC TGGCGGT GCCAAATTCGAG-CAACTCGCTG-GC GTTGCCCTGGCTGCC TERM 1474 1645226 - 1645195 - G 78 -2.8 -5.14563 | CCTGCTACGAAAAAA CTAGCTGCCTGCGA CCTA TCGACGGGGGCTAG AGCCCTAAATGATGC TERM 1475 1646310 - 1646292 - G 71 -8.1 -4.13711 | overlap 1646283 CGAAAACACCAGAAA TGCCCCG GTGAA CAGGGCA ATCAGCGCCAGCACG TERM 1476 1647633 - 1647610 - g 72 -13.9 -2.64735 | ACCTGATGCACACCA TGCGCCGCA AGGGTG TGCGGCGCA TTCCGGTGGTCGGCA Rfer_1528 1647312 - 1647773 + | signal-transduction protein Rfer_1529 1648263 - 1647823 - | 4-hydroxybenzoyl-CoA thioesterase TERM 1477 1648082 - 1648065 - G 77 -4 -4.9218 | opp_overlap 1648077, overlap 1648052 1648066 CAGCCACCACAAAAA TGGCGC CCGTCT GCGCCT GCAAAGCGCTTTGCT Rfer_1530 1648418 - 1649371 + | hypothetical protein TERM 1478 1649606 - 1649575 - g 70 -10.8 -3.53012 | gap 1 TCGCCGCCGGTGAAA CGCCCATGGCCGCCG CCT CGCCCGCCATGG-CG GTGCCCCCCATGGCC TERM 1479 1650329 - 1650310 - g 84 -9.2 -4.51196 | overlap 1650312 TTGAAATCGACAAAA GCCAGCGC GCCG GCGCTGCC AGCCAGGCGGCCTGA Rfer_1531 1649442 - 1650344 + | MotA/TolQ/ExbB proton channel Rfer_1532 1650348 - 1650773 + | biopolymer transport protein ExbD/TolR Rfer_1533 1650763 - 1651194 + | biopolymer transport protein ExbD/TolR Rfer_1534 1651865 - 1651212 - | ABC transporter related TERM 1480 1651244 - 1651277 + g 72 -11.7 -3.36878 | gap 1, opp_overlap 1651229 1651231 1651234 GACCATCCGCAGCGA GCCGCAG-CACCCG GTCGGCG CGGGTGGCGGCGGC TTGTGAATGGGTGAC Rfer_1535 1652914 - 1651862 - | tRNA delta(2)-isopentenylpyrophosphate transferase Rfer_1536 1654127 - 1652901 - | Bcr/CflA subfamily drug resistance transporter TERM 1481 1653406 - 1653396 - G 70 -4.6 -4.46072 | overlap 1653397 CTGAATAAAGACAAA CGAC GAT GCCG CCAGAAACGTGAACA TERM 1482 1654007 - 1653991 - G 80 -10.8 -4.07687 | ATCGGCGCGCCAAAA CCGGCG GTCAA CGCCGG CAGTGCGGGCAGGTA TERM 1483 1654295 - 1654268 - R 85 -9.1 -4.38154 | opp_overlap 1654285, overlap 1654285 AGAGCGCCGAGAAAA GACAGGCCACG AGAAAA CGTGGTCTGCC CCCGATTCGTTTATT Rfer_1537 1654734 - 1654306 - | heat shock protein Hsp20 TERM 1484 1654543 - 1654554 + g 73 -4.4 -4.61482 | overlap 1654533 GTTGCCGTCGATGCG GACA TTGA TGTC TTCTTTTTTCACGCC Rfer_1538 1655025 - 1656512 + | putative PAS/PAC sensor protein Rfer_1539 1656509 - 1657201 + | two component LuxR family transcriptional regulator TERM 1485 1657881 - 1657895 + G 78 -7 -4.59773 | overlap 1657882 TCAACCAAGTCTGAA GCGCGC GTG GCGCGG TTTTTACGCATCCAG Rfer_1540 1657356 - 1658114 + | Crp/FNR family transcriptional regulator Rfer_1541 1658120 - 1658665 + | hypothetical protein Rfer_1542 1658731 - 1659549 + | hypothetical protein TERM 1486 1659868 - 1659880 + G 71 -5.5 -4.40804 | overlap 1659856 GCAAGCTGCCGCGAT GTCGT GGC GCGAC TTTTCTGCGCTGATC TERM 1487 1660039 - 1660084 + G 73 -9.5 -3.95073 | gap 1, opp_overlap 1660020, overlap 1660034 CGTGCAGCCCTTGCA GGAGCTGGCGTCAGC-CCAGGC GAC GCTGGGCGCCAGCGCCAGCACC TTTATCAGTCTGGCG Rfer_1543 1659623 - 1660201 + | hypothetical protein Rfer_1544 1660201 - 1661766 + | hypothetical protein TERM 1488 1661891 - 1661857 - T 89 -13.8 -3.61398 | overlap 1661858 1661882 GCCCCCGTTGAATAA TGGTAAGTAGCTATTA AAA TAATAGCTACTCACCC GTGTGAGCGGACTGG TERM 1489 1661890 - 1661858 - T 91 -17.3 -2.76696 | overlap 1661857 1661882 CCCCCGTTGAATAAT GGTAAGTAGCTATTA AAA TAATAGCTACTCACC CGTGTGAGCGGACTG Rfer_1545 1663032 - 1661923 - | ferrochelatase TERM 1490 1662925 - 1662905 - G 78 -2.4 -5.10497 | overlap 1662907 AACTCACTTAAAAAA CGCCGCAC ATCAG GTGTGGTG GGGGTGTCGGGTGTG Rfer_1546 1663095 - 1664009 + | aminotransferase, class IV TERM 1491 1664093 - 1664107 + T 71 -4.3 -4.61482 | GCTGGGCTTTTGCGG CTTTG TTTGT CAAAG TTATTTTTTCCCCAC TERM 1492 1664133 - 1664168 + T 78 -13.2 -2.55351 | overlap 1664132 CCCACTCACTCCCCC AACCCCTCTCTCGCCC CGTC GGGCGAAAGAGGGGAG CTTCATGTGGCCGCG TERM 1493 1664513 - 1664542 + T 73 -5 -4.63184 | gap 1 CAAAACAATCACTGT CAACCCG-TGCTC AATCC GGGCATCAGGTTG TTTTTGCCATCAATT Rfer_1547 1667034 - 1664605 - | penicillin amidase TERM 1494 1665157 - 1665169 + g 70 -3.3 -4.62069 | CGAGTCCAGCGCGCG CGTGC CGA GCAGG TTTTTGAACTGCACC TERM 1495 1665544 - 1665556 + g 73 -4.7 -4.71426 | overlap 1665540 1665545 GGCCGACACGATGTA GCCGC GCT GCGGG TTTTCTTCATGCGGG TERM 1496 1666622 - 1666661 + g 80 -10.6 -4.09864 | opp_overlap 1666633, overlap 1666624 1666626 TTGATGCCGTCCAGG TAGGCCAGCAAGGCCCGG CTGG CGGGGCTTTGCAGGTCCA TTTTGGCCGCTGCGT Rfer_1548 1668393 - 1667089 - | amine oxidase TERM 1497 1667445 - 1667410 - G 100 -8.8 -4.85782 | GCGGTCAAAAACAAA CTGGGCTGGGGCAGCC GCGT GGCTGCGCAGGCTCAG CATCGGCTCGGGCAG TERM 1498 1667869 - 1667848 - G 85 -9.3 -4.60487 | opp_overlap 1667856 CATGACGCGCAAAAA CACGCTGGC GCTG GCCCGCGCG GCCGGGGTGTTGAGG TERM 1499 1668696 - 1668683 - R 73 -5.9 -4.42464 | AAGGTGGGAAATAAA CGCGC GATG GCACG TTGGCCTTGAACCGG TERM 1500 1668841 - 1668801 - R 72 -11.8 -2.62396 | gap 1, opp_overlap 1668799 CACGCGGCCACATGA GGCT-CCCCCCTTTCGCCC GGCG GGGCGAGAGGGGGGCAGGG GGGGGTGAGTGGGGG Rfer_1549 1669799 - 1668960 - | squalene/phytoene synthase TERM 1501 1669749 - 1669769 + g 91 -8.2 -4.72986 | opp_overlap 1669749 AAAGGCGTAATAGAA GCTGCTGC CCGAA GCGGCGGC TTTTTGCTGGACGTA Rfer_1550 1670694 - 1669810 - | squalene/phytoene synthase Rfer_1551 1670842 - 1672038 + | secretion protein HlyD TERM 1502 1672083 - 1672117 + G 91 -8.4 -4.78107 | AGAGTTTCAATCTGT CCAGGTGGGCGCTGGA GCA TGCGGCGCTGACCCGG TTTTTGATGCTGGTG TERM 1503 1673433 - 1673457 + G 100 -11.4 -5.055 | gap 1, opp_overlap 1673415 CCATGCCGATGCTCA CCGGCACGCTG ATCA CGGCG-GCCGG TTTTTTGCCCATTGG TERM 1504 1673546 - 1673562 + G 70 -5.1 -4.47551 | overlap 1673548 GCGCTGGTGCTGAGC TGGATCG TGT CGGTCTA TTTTGTGCCTTACCT Rfer_1552 1672046 - 1675228 + | acriflavin resistance protein TERM 1505 1675252 - 1675276 + F 100 -12.1 -5.04249 | overlap 1675249 GTTGACCGATTTCCC GGGGCTGGTCT TGC AGGCCGGCCTC TTTGTTTTTTGCGCG TERM 1506 1675591 - 1675575 - g 74 -12.3 -3.17527 | overlap 1675573 CACGCACCATCAAGA TGGACGG ATT CCGTCCA GGCAAGGTGCCCATG tig 1675454 - 1676764 + | trigger factor TERM 1507 1676788 - 1676836 + F 100 -14 -4.08394 | gap 2, overlap 1676792 TGTTCCCTGGCAGCT GCAATGGGGCTTG--GGCCGGGCT TGT AGTCTGGCCTGCAGGCCCCATTTC TTTTGGGACAAATAT TERM 1508 1676792 - 1676832 + F 100 -13.4 -4.64861 | gap 2, overlap 1676788 CCCTGGCAGCTGCAA TGGGGCTTG--GGCCGGGCT TGT AGTCTGGCCTGCAGGCCCCA TTTCTTTTGGGACAA Rfer_1554 1676888 - 1677517 + | ATP-dependent Clp protease, proteolytic subunit ClpP clpX 1677523 - 1678788 + | ATP-dependent protease ATP-binding subunit TERM 1509 1678851 - 1678871 + F 73 -10.5 -3.39884 | opp_overlap 1678848 CTGCTTAACAATGGG GTTCGGGTT GAA AACCTGAAC TTCTGACTCATATTT TERM 1510 1679878 - 1679857 - g 89 -11.7 -4.25104 | CGTGGGCCAGCAAAA CCAAGATCA AACA TGATCTTGG CAATGCAGAAAAGGT Rfer_1556 1678911 - 1681352 + | ATP-dependent protease La TERM 1511 1681533 - 1681514 - T 91 -7.8 -5.11112 | opp_overlap 1681515, overlap 1681515 AAATTGCAACAAAAA GGGGAAGC TGAT GCTTCCCT TTTTTGTAAGGAAAA TERM 1512 1681515 - 1681532 + T 100 -11.3 -5.24129 | opp_overlap 1681514 1681515 AATTGCAACAAAAAG GGGAAGC TGAT GCTTCCC TTTTTTGTAAGGAAA TERM 1513 1681532 - 1681515 - T 79 -11.3 -3.6504 | opp_overlap 1681515, overlap 1681514 AATTGCAACAAAAAG GGGAAGC TGAT GCTTCCC TTTTTTGTAAGGAAA TERM 1514 1681927 - 1681913 - T 95 -8.5 -4.97158 | opp_overlap 1681914 CCAGACGAAAGAAAA CCCGC ACGCG GCGGG CAGTGTGGTGGCGCT Rfer_1557 1682723 - 1681974 - | hypothetical protein Rfer_1558 1685265 - 1682914 - | sigma 70 (RpoD) TERM 1515 1684519 - 1684495 - G 90 -14.3 -3.53012 | opp_overlap 1684488 1684486 GGTGGTGCGGCCAAA CTCGCTGTCCA CTG TGGACAGCGCG GCCTCGGCCTCTTCT TERM 1516 1685028 - 1685038 + g 83 -4.6 -5.15167 | overlap 1685022 1685021 CAGCGGCTTTGGGCG GTCG GCC CGGC TTTTTCTTGATAATG Rfer_1559 1686134 - 1685694 - | crcB protein Rfer_1560 1686266 - 1687132 + | diguanylate cyclase Rfer_1561 1688219 - 1687197 - | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 1517 1687650 - 1687661 + g 71 -7.2 -4.24745 | opp_overlap 1687641 ATGAAAGGCGACGCT GGCC ATGC GGCC TTTGTGTTGCTCGTG TERM 1518 1688200 - 1688188 - G 76 -6.2 -4.63218 | TTGCTGCCAATAAAA CCGG CAGCT CCGG TCACGACGATACGGG Rfer_1562 1689166 - 1688216 - | bifunctional ADP-heptose synthase Rfer_1563 1690320 - 1689163 - | hypothetical protein TERM 1519 1689325 - 1689336 + g 74 -5.8 -4.56597 | CTGCGGATGAAATTG CTCG TGTT CGAG TTTTTCACCAGCAAG TERM 1520 1690290 - 1690276 - G 71 -7 -4.20368 | CCAGCCCAACACAAA GGCCAG CGG CAGGCC CAGCAGTATCCAACT Rfer_1564 1690615 - 1690310 - | hypothetical protein TERM 1521 1690600 - 1690570 - G 100 -8.5 -5.79526 | gap 1 ACAGGGTAAAAAAAA TGGCTGCTTTAAGT ATCC ACTTAA-GCAACCA CAGGATTTGTTTCAT Rfer_1565 1690957 - 1690646 - | histone-like DNA-binding protein TERM 1522 1690962 - 1691002 + r 100 -14.1 -3.97102 | overlap 1690967 GAGCGAGTCATTTTT GGAAGTTGTCATGCCGGAT CAA ATCCGGCATGACAGTTCGC TTCTTACTTTTCGGT TERM 1523 1690967 - 1690997 + r 100 -19.2 -3.31877 | overlap 1690962 AGTCATTTTTGGAAG TTGTCATGCCGGAT CAA ATCCGGCATGACAG TTCGCTTCTTACTTT rpsA 1692706 - 1691006 - | 30S ribosomal protein S1 TERM 1524 1692831 - 1692854 + r 74 -9.6 -3.62354 | opp_overlap 1692788, overlap 1692789 1692788 1692829 GGATTTTGCACATGT GCCTCTCAGA TTGC TCTGAAAGGC TGTTTGCTTTGCCAC Rfer_1567 1694845 - 1692836 - | bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase TERM 1525 1693310 - 1693286 - G 73 -4.2 -4.59511 | AACACCGTTCAAAAA CACCTGGTCC TGGCT GAACCGGATG GAGAGACCTGGAATC TERM 1526 1693648 - 1693635 - G 70 -3.1 -4.65895 | overlap 1693637 GCGGCGAGTGAAAAA CACAT CGCC ATGCG GTGGTCGTCATAGGT Rfer_1568 1695717 - 1694845 - | prephenate dehydrogenase TERM 1527 1695539 - 1695525 - G 70 -10 -3.44051 | CGGCGATCAGCACAA TGTCGG CAC CCGACA CCGCCAGCAAGGCAG Rfer_1569 1696800 - 1695718 - | chorismate mutase TERM 1528 1696577 - 1696600 + g 70 -4.6 -4.56597 | gap 1, opp_overlap 1696587, overlap 1696589 GCGGACATGATTTCG CGCCAGATC ACGGCCA GA-CTGGCG TTTTTGAGCGGGCCG Rfer_1570 1697959 - 1696847 - | phosphoserine aminotransferase Rfer_1571 1700672 - 1698030 - | DNA gyrase subunit A TERM 1529 1700407 - 1700389 - G 73 -4.5 -4.65895 | opp_overlap 1700389 1700396 TGGCGCATGGAAAAA TCCTGCG CCATC CGCACGA TGGTGTCGTAGACAG TERM 1530 1700893 - 1700911 + H 86 -6.6 -5.00616 | opp_overlap 1700893 1700894, overlap 1700894 1700895 AGCGTCTTATAAATA TTCGCAGC GCT GCTGCGGC TTTTTTCCCCAAAAG TERM 1531 1700894 - 1700910 + H 71 -10.1 -3.60048 | opp_overlap 1700893 1700894, overlap 1700893 1700895 GCGTCTTATAAATAT TCGCAGC GCT GCTGCGG CTTTTTTCCCCAAAA TERM 1532 1701170 - 1701136 - g 70 -10.6 -3.53091 | opp_overlap 1701128, overlap 1701142 ATCGTTGCCGCCAAA GCAGAACCAGCGCCCG CAC CGGTAGCTGCTCCTGC TCCGGCAGTGGTTGC TERM 1533 1701472 - 1701459 - g 75 -2.3 -4.87665 | GGGCATCGAGAAAAA CCGTG TTTA CACTG AAGGCAAGGGCGAAT Rfer_1572 1700935 - 1701573 + | OmpA/MotB TERM 1534 1701635 - 1701620 - T 100 -11.8 -5.40072 | opp_overlap 1701620 CTGGTTTCAAAAAAA CCCCGC AACA GCGGGG TTTTTTTTGGGGCTC TERM 1535 1701620 - 1701635 + T 100 -11.8 -5.76949 | opp_overlap 1701620 CTGGTTTCAAAAAAA CCCCGC AACA GCGGGG TTTTTTTTGGGGCTC TERM 1536 1701888 - 1701922 + T 100 -16 -4.16943 | opp_overlap 1701893, overlap 1701893 AAGCAAATAAAAACA AAAAAGCCTGCTATTT ATT AAATAGCAGGCTTTTC TTTTCCCGTATGGGC TERM 1537 1701917 - 1701893 - T 100 -15.9 -6.01725 | opp_overlap 1701888 1701893 AATAAAAACAAAAAA GCCTGCTATTT ATT AAATAGCAGGC TTTTCTTTTCCCGTA TERM 1538 1701893 - 1701917 + T 100 -15.9 -5.09259 | opp_overlap 1701893, overlap 1701888 AATAAAAACAAAAAA GCCTGCTATTT ATT AAATAGCAGGC TTTTCTTTTCCCGTA Rfer_1573 1702850 - 1702071 - | enoyl-CoA hydratase/isomerase TERM 1539 1702644 - 1702670 + g 73 -4.2 -4.67755 | GAGTTGGGCCATGGC GCCGATGTCGGC CCC GGCGGCAAAGGC TTTTTCGCTCCCTGT Rfer_1574 1704725 - 1702899 - | peptidase M61 TERM 1540 1704407 - 1704381 - G 73 -4.3 -4.65895 | gap 1, opp_overlap 1704402, overlap 1704382 GGTGCCATTGAAAAA CCCGCGCGCGCC GTCC AGC-CACGCGGT GCGCACCGAGTTGTC TERM 1541 1704533 - 1704549 + g 82 -12.3 -3.63569 | GGCCGCCTTGGTGGG CCTGCAG GCG CTGCAGG TTCTTGGCAAATTCG TERM 1542 1704756 - 1704746 - R 93 -4.6 -5.46657 | overlap 1704747 CATTTTAATAAAAAA GGCC GCT AGCC CCTATCCAATAAGTG Rfer_1575 1705612 - 1704869 - | thiol:disulfide interchange protein DsbC Rfer_1576 1706739 - 1705612 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase TERM 1543 1706198 - 1706168 - G 80 -4.1 -5.03314 | gap 2 TCGATTGGCAAAAAA GCCAG-GATTT-CAC CTT GCGTAAACCACTGGC GTGCTGTTTGGCCAT TERM 1544 1707498 - 1707508 + G 71 -6.8 -4.24404 | opp_overlap 1707498, overlap 1707503 1707504 CGGACCTTGTGAGAA CTCC GTC GGAG TTTTCCGGTTTGAGT Rfer_1577 1707212 - 1708747 + | protease-like TERM 1545 1709782 - 1709767 - g 71 -5.4 -4.4009 | gap 1, opp_overlap 1709767, overlap 1709769 TGCCACCGCACAAAA CG-CACC GGT GGTGGCG ATTTGCGCCAAGATG Rfer_1578 1709084 - 1710169 + | translation-associated GTPase Rfer_1579 1710736 - 1710266 - | hypothetical protein TERM 1546 1710842 - 1710819 - H 71 -5.9 -4.33417 | overlap 1710820 1710822 GGCAGTTAGAATAAA CCAGCGGTG TCCTGC CACCGCAGA TTCCAACACCACATT TERM 1547 1711154 - 1711110 - g 70 -10 -3.48395 | gap 1, overlap 1711097 1711145 ATCGCCGGCACAGAA GCCGCCAT-GATGGCGCAGGC CGCT GCCTACAACATCGACTGCGGC GCCCAGATCATTGAC TERM 1548 1711364 - 1711343 - g 72 -2.1 -4.84359 | gap 1 TCAGTCGCACAAAAA CGCG-GTGGC GCT GGCGCGCGCG GCTGAGGGCGCCGGT TERM 1549 1711827 - 1711837 + G 88 -2.4 -5.51165 | overlap 1711815 GGCCAGCAGGCCGCA GCGG TTG CCGA TTTTTTTGACGTTTT Rfer_1580 1710885 - 1711937 + | dihydrouridine synthase TIM-barrel protein nifR3 TERM 1550 1712161 - 1712144 - g 80 -3.3 -5.09225 | overlap 1712145 1712146 ACGCTACGTAAAAAA CTGCTCG ATCA CAAGCTG ATCAAGTAAGCCATC Rfer_1581 1711934 - 1712170 + | helix-turn-helix, Fis-type TERM 1551 1712437 - 1712416 - g 80 -10.1 -4.07687 | ACGGTCGGGTCAAAA CCCTGCACC CCAA GGTGCATGG CGGCCTGCTGGCGCG Rfer_1582 1712229 - 1713827 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1552 1713854 - 1713879 + T 100 -17.6 -5.4833 | opp_overlap 1713854 TTGAACCCAGAAAAA GCCGGGCCAC GATTGA GTGGCCCGGC TTTTTTGTTGACTCA TERM 1553 1713879 - 1713854 - T 100 -17.6 -4.91712 | opp_overlap 1713854 TTGAACCCAGAAAAA GCCGGGCCAC GATTGA GTGGCCCGGC TTTTTTGTTGACTCA Rfer_1583 1715452 - 1714025 - | cytochrome c, class I TERM 1554 1714902 - 1714915 + g 84 -3.7 -5.24531 | overlap 1714904 AGAACGTGCTCACGC GCCCG GTCG CTGGC TTTTTTGTAAGCGCT TERM 1555 1715509 - 1715523 + H 71 -8.6 -3.90741 | CATTCTTTTCAATTT TGGGAA TAT TTCCCA TTAATTTTATTTGTC TERM 1556 1715708 - 1715744 + G 72 -12.1 -3.02144 | opp_overlap 1715663, overlap 1715738 CCCGCTGCCGGCTTG CCTGAGCCGGCGCTGGC GGC GCAAGCGATGGCGCGGG TGTTGCAGCCACTGG TERM 1557 1715985 - 1716013 + G 78 -6.5 -4.70659 | overlap 1715985 1715987 CGGTGGCGGCTTCGG TGGTGGCGCGCTG GAT CAGCGAGCCCCGG TTTTTGAATATCGAC TERM 1558 1715985 - 1716012 + G 70 -9.8 -3.41913 | gap 1, overlap 1715985 1715987 CGGTGGCGGCTTCGG TGGTGGCGCGCTG GAT CAGCGAGCC-CCG GTTTTTGAATATCGA TERM 1559 1716295 - 1716315 + G 72 -14 -2.52516 | opp_overlap 1716293 1716292, overlap 1716294 GGCGGTGCACAACCT GGCCCCTG ATCGG CAGGGGCC CTTGATGCTGGAGCA Rfer_1584 1715654 - 1716610 + | hypothetical protein Rfer_1585 1716607 - 1717824 + | hypothetical protein TERM 1560 1717846 - 1717859 + T 73 -5.9 -4.46854 | opp_overlap 1717846 CAGGCAGGGGGAAAG CGGTC GCCA GGCCG TTTTGGATTTTCTAT Rfer_1586 1718691 - 1717936 - | hypothetical protein TERM 1561 1718264 - 1718252 - G 70 -3.3 -4.63218 | overlap 1718261 1718262 GCGTGGGCAATAAAA CTGGT AAA ACCCG CCGTGGCTGACAGCA TERM 1562 1718281 - 1718261 - G 71 -6.8 -4.19879 | overlap 1718252 1718262 1718280 ATAAAACTGGTAAAA CCCGCCGT GGCTG ACAGCAGG GCGCCCAGCCACTTC TERM 1563 1718441 - 1718412 - G 76 -5.6 -4.64676 | overlap 1718400 GCAGCTTGAACAAAA GCGCCCCGATCA CAATGC CGACCAGGCCGC AGGGGATCAGAAACT TERM 1564 1718637 - 1718609 - G 80 -10.3 -4.08064 | overlap 1718610 AAGCCCGCGCCAAAA CCGCTCTTGCTGA CAC CCAGCAAGAGCAC AGCCGGGACGGTGAC TERM 1565 1718636 - 1718610 - G 76 -13.8 -3.04517 | overlap 1718609 AGCCCGCGCCAAAAC CGCTCTTGCTGA CAC CCAGCAAGAGCA CAGCCGGGACGGTGA Rfer_1587 1718855 - 1719289 + | hypothetical protein TERM 1566 1719326 - 1719306 - T 100 -12.6 -5.44119 | opp_overlap 1719306, overlap 1719322 CGCAGCCCAAAAAAA GCCGCTTG TGAAC CAAGCGGC TTTTTGACGCGAGCG TERM 1567 1719306 - 1719326 + T 100 -12.6 -4.56597 | opp_overlap 1719306 1719322 CGCAGCCCAAAAAAA GCCGCTTG TGAAC CAAGCGGC TTTTTGACGCGAGCG Rfer_1588 1720012 - 1719347 - | cytochrome c, class I TERM 1568 1719752 - 1719702 - G 72 -13.3 -2.52623 | gap 1, overlap 1719701 1719699 TGCGCTTCATAATAG GCCGCGACATCGGCGATGTCCTGA TCAC TCAGGCCAGCGGCAATGCCGCG-C ATGGTGGGATGCTTG Rfer_1589 1720115 - 1720969 + | AAA_5 ATPase Rfer_1590 1720996 - 1721598 + | GCN5-related N-acetyltransferase Rfer_1591 1721630 - 1722841 + | hypothetical protein TERM 1569 1723128 - 1723113 - g 70 -4 -4.63486 | gap 1, opp_overlap 1723127 AGCGGCCGAACAAAA CACGCAG GAG CTG-GTG GCCACGCTGGGCTAT TERM 1570 1723301 - 1723267 - g 80 -11.2 -3.75897 | overlap 1723268 AAGGTTGAACTCAAA GGCCCGATCGCCACCG ACC CGGCGGCGTCCCGGCA ACGCCAGCAGATTGA TERM 1571 1723300 - 1723268 - g 79 -14.7 -2.85056 | overlap 1723267 AGGTTGAACTCAAAG GCCCGATCGCCACCG ACC CGGCGGCGTCCCGGC AACGCCAGCAGATTG Rfer_1592 1722838 - 1724703 + | surface antigen (D15) TERM 1572 1725779 - 1725743 - g 74 -13 -3.14564 | gap 1 GCAGTGGGCGATCAA GTCGCTGCAGGCCACCG GCGC CGGTGGCC-GCATCGAA GGCAAAGGGCAATTC Rfer_1593 1724703 - 1728581 + | hypothetical protein Rfer_1594 1730348 - 1728723 - | binding-protein-dependent transport systems inner membrane component TERM 1573 1729158 - 1729134 - G 76 -5.5 -4.64861 | overlap 1729130 CGCGGTTAAAACAAA GCCCACGCTGC TTT GCGGCGCCAGC GTCTGCAGCCAGCCC TERM 1574 1730574 - 1730603 + G 85 -15.8 -3.14931 | gap 1, opp_overlap 1730591 GGGCTGGAACCCGTG GCGGGTGGC-AGC ATCAA GCTCGCCACCCGC TTGGTGAGCAGTGCC Rfer_1595 1730406 - 1731491 + | ABC transporter related Rfer_1596 1731583 - 1732044 + | hypothetical protein Rfer_1597 1732911 - 1732177 - | cytochrome c biogenesis protein, transmembrane protein Rfer_1598 1733304 - 1732924 - | hypothetical protein Rfer_1599 1734080 - 1733358 - | hypothetical protein Rfer_1600 1734643 - 1735098 + | hypothetical protein TERM 1575 1735473 - 1735495 + G 70 -4.9 -4.43877 | gap 1 CTGGGGGACAAGCTT TTG-CCAGTG AAGC CGCTGGACAA TTTCTTTGCACGTTG TERM 1576 1735720 - 1735741 + G 74 -7.2 -4.43208 | overlap 1735711 1735721 TGACGCGGTTCGCCC GGCAGGCC GGGTTG GGCCTGCA TTTCTTTCGCGGTGT Rfer_1601 1735107 - 1736252 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rfer_1602 1736386 - 1736610 + | hypothetical protein Rfer_1603 1736610 - 1737236 + | RNA polymerase sigma factor Rfer_1604 1737236 - 1737430 + | hypothetical protein TERM 1577 1737442 - 1737428 - T 100 -5 -5.5074 | GAATCCAAGAAAAAA TGAACC CTG GATTCA ACCGGTCGATGCGAT Rfer_1605 1738021 - 1737494 - | DoxX Rfer_1606 1738790 - 1738005 - | hypothetical protein Rfer_1607 1739749 - 1738787 - | hypothetical protein Rfer_1608 1740168 - 1739779 - | integral membrane protein-like Rfer_1610 1740774 - 1741700 + | hypothetical protein Rfer_1611 1742091 - 1743053 + | radical SAM family protein Rfer_1612 1743166 - 1744236 + | UbiE/COQ5 methyltransferase Rfer_1613 1746557 - 1744260 - | selenide, water dikinase TERM 1578 1745644 - 1745627 - G 76 -6.2 -4.62069 | opp_overlap 1745629, overlap 1745629 GGCGCACCGCAAAAA CGCCGG CTTTCT CCAGCG GGTGGTTCACCATGC Rfer_1614 1747577 - 1746585 - | glycosyl transferase, group 1 TERM 1579 1748176 - 1748188 + G 80 -3.3 -5.06414 | CACCTCCGGTCATTT GATGC CGC GCAGC TTTTTGTTGCAGGCC Rfer_1615 1747730 - 1748593 + | phosphonate-binding periplasmic protein TERM 1580 1748568 - 1748580 + F 76 -10.5 -3.74693 | opp_overlap 1748561 GCATTGAACAGGCCG CCCGC AAC GCGGG TTTGCTGAAGTAAAG Rfer_1616 1748669 - 1749502 + | ABC transporter related TERM 1581 1749692 - 1749711 + G 71 -7.1 -4.15044 | opp_overlap 1749692 GGCGCCTTGAAGCCA GCGCTGA ATTTTG TCGGCGC TTTCTTCCCGCCGCG TERM 1582 1749800 - 1749765 - g 74 -11 -3.53012 | opp_overlap 1749779 1749783, overlap 1749766 TGCTGGCGCGTGAAA CCTGGCGCACCGTGGC CATG GCCACAGCGGGCCTGA CGCTGGCGCTGCTGC Rfer_1617 1749518 - 1750372 + | phosphonate ABC transporter permease TERM 1583 1750540 - 1750558 + G 85 -5.9 -5.01732 | TCTGGTCGTGGAACG CGGCGCA AAGAA TGGGCCG TTTTTTGGGCGAGTT TERM 1584 1750913 - 1750901 - g 78 -4.7 -4.73864 | overlap 1750902 CGAAGCAATAGAAAA CGCCG CGC CGGGG CCAAGCTTTGCGCTG Rfer_1618 1750383 - 1751207 + | phosphonate ABC transporter permease Rfer_1619 1752422 - 1751226 - | hypothetical protein TERM 1585 1751563 - 1751605 + g 73 -9.8 -3.57263 | overlap 1751564 TTCAGATGCATGGCG GGTGCTGTGTTGACCAGTGG CAG CCAGTGGTCAAACCAGCGCA TTTGCCAATCACCGT TERM 1586 1751564 - 1751604 + g 73 -13.3 -2.74144 | overlap 1751563 TCAGATGCATGGCGG GTGCTGTGTTGACCAGTGG CAG CCAGTGGTCAAACCAGCGC ATTTGCCAATCACCG Rfer_1620 1752790 - 1752458 - | MerR family transcriptional regulator TERM 1587 1752921 - 1752941 + H 76 -10.3 -3.63569 | ACCTTTGGCAGCATC GTCCCGGCC CTT GGCCTGGGC TTCTTGCAGGATTAC Rfer_1621 1753133 - 1755283 + | pyridine nucleotide-disulphide oxidoreductase dimerisation protein Rfer_1622 1755289 - 1755678 + | hypothetical protein TERM 1588 1756256 - 1756272 + G 74 -6.6 -4.33274 | GCGCTGGGAAACGCG TGGTGT TTGGC ACACCA TTTTCCTGATGTGGC Rfer_1623 1755675 - 1756349 + | glycosyl transferase family protein Rfer_1624 1756346 - 1757005 + | hypothetical protein TERM 1589 1757166 - 1757188 + T 71 -4.7 -4.55295 | overlap 1757159 1757169 TAACTGAGTGTGCCG GTGCGGGCC TCACT GGCCGGTGC TTTGTTTGTCCACGA Rfer_1626 1758255 - 1757338 - | hypothetical protein Rfer_1627 1758330 - 1759337 + | serine/threonine protein kinase Rfer_1628 1759334 - 1760251 + | protein serine/threonine phosphatases Rfer_1629 1760267 - 1760998 + | ribonuclease PH TERM 1590 1761211 - 1761181 - g 76 -9 -4.07885 | gap 1 CACCTTTGTCGAAAA CGCGCTGGCCAAG GCGCGT CAT-GCCAGCGCG CACAGCGGCTTGCCC Rfer_1630 1761038 - 1761637 + | Ham1-like protein TERM 1591 1762812 - 1762835 + G 85 -6.7 -4.86862 | gap 1 CGTGCGCGACCTGGC CCGCGTCACG CCCAC TGTG-CGCGG TTTTGATTTTTTGAG Rfer_1631 1761703 - 1762887 + | putative oxygen-independent coproporphyrinogen III oxidase TERM 1592 1763184 - 1763161 - gT 74 -4.4 -4.70659 | GCCGAGAGTCAAAAA GGGGTGACTC AGCC GCGCCATCCC CTGAAGCTGGTCGAT Rfer_1633 1764007 - 1763540 - | hypothetical protein Rfer_1632 1762978 - 1763613 + | CBS domain-containing protein TERM 1593 1763904 - 1763916 + gT 80 -3.3 -5.09225 | TGGATGCGGTAATCC TCCTC CCA GCGGA TTTTTTCGATCGAAT Rfer_1634 1766111 - 1764009 - | TRAP transporter, 4TM/12TM fusion protein TERM 1594 1764167 - 1764146 - G 78 -4.3 -4.7629 | overlap 1764148 1764160 CGACGAAGGCAAAAA CGCGCCAGA GCAA TCCGACGGG CTGCCACAGGTAGCC TERM 1595 1766225 - 1766199 - R 100 -5.7 -5.62219 | opp_overlap 1766199 AAGATATTAAAAAAA GCCGCTGTGGC GTTTG ACCAGCGCGGC TCGAATACGATCACG Rfer_1635 1767209 - 1766250 - | TRAP transporter solute receptor TAXI family protein TERM 1596 1766968 - 1766994 + g 71 -7.9 -4.07568 | opp_overlap 1766959 GTAAAAGCGATTTCG CCGCGGCCTGC CTGGA GCAGGTTGAGG TTTTCGGCGGACGCC Rfer_1636 1768326 - 1767391 - | dihydrodipicolinate synthetase TERM 1597 1767538 - 1767555 + g 80 -11.3 -3.71848 | overlap 1767534 1767541 GTGTTTTCTCACCGC CAAGCCG ATGC CGGCTTG TTGTTCATAGCGGGC TERM 1598 1768234 - 1768223 - G 75 -2.2 -4.96848 | overlap 1768225 TTTGCCAGATAAAAA TCGA CCAT CCGA TCCGTGCTTGCCAAG Rfer_1637 1769042 - 1768323 - | hypothetical protein TERM 1599 1768548 - 1768535 - G 74 -5.9 -4.57073 | overlap 1768537 CATCGTTGGGAAAAA CGGCG ACGC CACCG CAGGCAATTGGTTCC Rfer_1638 1769877 - 1769068 - | short-chain dehydrogenase/reductase SDR TERM 1600 1769562 - 1769579 + g 70 -10.5 -3.44998 | opp_overlap 1769554, overlap 1769560 1769563 GGCCAAACGCCGTGG TGGGCGG TGGG CCGCCCG TATTGTTGATCAGTA TERM 1601 1769681 - 1769694 + g 73 -5.2 -4.58283 | opp_overlap 1769673, overlap 1769674 CACAGCAGGGGCAGT GCGG TGCCGC CCGC TTTTTGCACCGATTC TERM 1602 1770869 - 1770845 - g 70 -4.9 -4.57073 | overlap 1770847 GATGCTTTTCAAAAA GAGGCCATGCG TTT CGCACAACCTG GGTAGAACGCCGTGT Rfer_1639 1769999 - 1770874 + | LysR family transcriptional regulator Rfer_1640 1772066 - 1770966 - | FAD dependent oxidoreductase Rfer_1641 1772823 - 1772053 - | GntR-like Rfer_1642 1773241 - 1772909 - | hypothetical protein Rfer_1643 1774288 - 1773305 - | zinc-binding alcohol dehydrogenase Rfer_1644 1774403 - 1774576 + | hypothetical protein TERM 1603 1774609 - 1774644 + T 100 -13.2 -4.11404 | overlap 1774610 1774614 ACCCTCTTGTATGAC GGGCACACGGCACAGC TCAA GCCGTGCCGTGTTCCA TTTGTCTGCTCTCAA TERM 1604 1774610 - 1774643 + T 100 -16.7 -3.0636 | overlap 1774609 1774614 CCCTCTTGTATGACG GGCACACGGCACAGC TCAA GCCGTGCCGTGTTCC ATTTGTCTGCTCTCA TERM 1605 1774614 - 1774639 + T 95 -14.7 -3.36096 | overlap 1774610 1774609 CTTGTATGACGGGCA CACGGCACAGC TCAA GCCGTGCCGTG TTCCATTTGTCTGCT Rfer_1645 1775801 - 1774686 - | acyl-CoA dehydrogenase-like TERM 1606 1775413 - 1775467 + g 70 -4.2 -4.56597 | overlap 1775411 1775447 1775458 CAGCTATCGAGGCGG TAGCGAGCGGCGCGCTCCTGGT ACGCCAGCACC ACCAGCGCTTCGCCGCTGGCTA TTTTTGGCAGCCAGG TERM 1607 1775711 - 1775691 - G 89 -12.5 -4.07568 | TGCGTCGCGTGAAAA GCCACCGGC CTT GACGGTGGC CCGGCGGCGCTCAAA Rfer_1646 1777018 - 1775837 - | acyl-CoA dehydrogenase-like TERM 1608 1777485 - 1777515 + G 72 -14 -2.62018 | overlap 1777484 CTGCCTTGCCGGCGG TCGAGTTCGGGCGC ATT GCGCCGGAACTGGA GTTGGTTGCGATGTT Rfer_1647 1777430 - 1778221 + | CRP/FNR family transcriptional regulator Rfer_1648 1778904 - 1778218 - | hypothetical protein TERM 1609 1778808 - 1778820 + g 73 -4.7 -4.66163 | GCGGGTAGCTGTCAG GCACG GTG CGGGC TTTTTCCATCAGGGT Rfer_1649 1778939 - 1779532 + | phosphoribosylglycinamide formyltransferase TERM 1610 1779634 - 1779669 + T 86 -7.5 -4.72986 | opp_overlap 1779638 1779658, overlap 1779635 1779637 1779638 CCGAGGCCTGGCGCA AGAACGCCGCAGTGT AGAACC ACACTGCGGCGCTGG TTTTTGGTGGGCCTC TERM 1611 1779635 - 1779668 + T 75 -11 -3.4331 | opp_overlap 1779638 1779658, overlap 1779634 1779637 1779638 CGAGGCCTGGCGCAA GAACGCCGCAGTGT AGAACC ACACTGCGGCGCTG GTTTTTGGTGGGCCT TERM 1612 1779637 - 1779666 + T 87 -13.6 -3.28472 | opp_overlap 1779638 1779658, overlap 1779635 1779634 1779638 AGGCCTGGCGCAAGA ACGCCGCAGTGT AGAACC ACACTGCGGCGC TGGTTTTTGGTGGGC TERM 1613 1779638 - 1779665 + T 90 -17.1 -2.56601 | opp_overlap 1779638 1779658, overlap 1779637 1779635 1779634 GGCCTGGCGCAAGAA CGCCGCAGTGT AGAACC ACACTGCGGCG CTGGTTTTTGGTGGG TERM 1614 1779665 - 1779638 - T 100 -17.8 -3.61398 | opp_overlap 1779638 1779637 1779635 1779634, overlap 1779658 GGCCTGGCGCAAGAA CGCCGCAGTGTA GAAC CACACTGCGGCG CTGGTTTTTGGTGGG hrcA 1781031 - 1780027 - | heat-inducible transcription repressor TERM 1615 1780258 - 1780272 + g 89 -7.1 -5.06414 | opp_overlap 1780258 GGCAATATCGAGCAA GCGCA TGAGC TGCGC TTTTTGTTCAAACAG TERM 1616 1780442 - 1780459 + g 76 -5.5 -4.67353 | CTGGCAATTTCCGAG CGAAGTG ATTC CACCTCG TTTTTCAATCGCTCA ppnK 1781060 - 1781956 + | inorganic polyphosphate/ATP-NAD kinase TERM 1617 1783069 - 1783057 - g 76 -10.5 -3.73072 | AAGGCGCGCACCAAA GCCGC ACC GCGGC TGGCAGCAGCCATCA Rfer_1652 1781959 - 1783635 + | DNA repair protein RecN Rfer_1653 1783616 - 1784521 + | hypothetical protein Rfer_1654 1785541 - 1784507 - | A/G-specific adenine glycosylase TERM 1618 1784926 - 1784945 + g 78 -6.4 -4.59773 | overlap 1784928 AAGACCGGGCTAGCG GGCAGACT GCGC AGTCTGGC TTTTTGGCGGTACAA TERM 1619 1785124 - 1785095 - G 70 -9.9 -3.53224 | CAGGTCGCTGTCAAA GCCCAGCACGCGC GTGA GCACGCGCTTGAC GTTGCCATCCAGAAT Rfer_1655 1787538 - 1785559 - | hypothetical protein TERM 1620 1785927 - 1785907 - G 88 -14.1 -3.57462 | opp_overlap 1785905 CAGTCGATCTGCAAA TTCAGGCTG CGC CAGCCTGAA CGTGTTGCCAAGACT TERM 1621 1786324 - 1786339 + g 74 -3.2 -4.7254 | opp_overlap 1786326, overlap 1786326 GGTTTGCTCCTGCGA AATGCG GGAC CGCATG TTTTTGATCACGGCT Rfer_1656 1788403 - 1787588 - | formamidopyrimidine-DNA glycosylase TERM 1622 1788555 - 1788568 + G 85 -3.8 -5.3236 | opp_overlap 1788532, overlap 1788553 GCCCACGACTTCAGC GCTC AGCAGC GAGC TTTTTTATCAATTGT TERM 1623 1788605 - 1788626 + G 74 -12.9 -3.19642 | GGGAGCTCAATGCCC GCGGCGGCG AACC CGGCGCCGC TTACTCGCTGATCCT TERM 1624 1788941 - 1788931 - g 74 -6.8 -4.30719 | GCGGCCGATAAGAAA CTGG CCG CCAG CACGGTTGAGCAGGC TERM 1625 1789657 - 1789646 - g 71 -5.8 -4.40561 | GTCGGCTAAAAATAA GTGC CGAA GCAC AACTGCTGCGTGACA Rfer_1657 1788424 - 1790187 + | tetratricopeptide TPR_4 Rfer_1658 1790187 - 1790696 + | putative outer membrane lipoprotein TERM 1626 1790991 - 1790966 - g 70 -3.1 -4.65895 | overlap 1790967 1790968 1790970 GTCGGGATCGAAAAA TGCATTCCCGC GCAA GCGGGCATGGG CGGTGGATCTTCCGA Rfer_1659 1790693 - 1791556 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 1627 1791882 - 1791871 - g 74 -5.8 -4.5287 | CGAAATCAATCAAAA CGTG CGGG CACG GGATGTTTTTGTGGT TERM 1628 1792526 - 1792504 - g 81 -15.6 -2.87132 | opp_overlap 1792504, overlap 1792517 GGGGCCCGCCATAGA GCGCATCACC AAT GGCGATGCGC TTGATGAAGTGGTGG TERM 1629 1792504 - 1792526 + G 78 -13.4 -3.17212 | opp_overlap 1792504 1792517 GGGGCCCGCCATAGA GCGCATCACC AAT GGCGATGCGC TTGATGAAGTGGTGG Rfer_1660 1791716 - 1792693 + | ribose-phosphate pyrophosphokinase TERM 1630 1792695 - 1792684 - f 71 -5.8 -4.30576 | opp_overlap 1792684 1792684 CTCGGATCAGGAAAA CCTC TTTT GAGG TTTCTGCAGAGCTTC TERM 1631 1792695 - 1792730 + F 74 -7.6 -4.13654 | overlap 1792684 1792697 1792698 1792724 AAAACCTCTTTTGAG GTTTCTGCAGAGCTTC ATGA GAGGTTTTGCAGAGTC TTTCTGATTTGGGCA TERM 1632 1792697 - 1792728 + F 70 -8.8 -3.66216 | overlap 1792684 1792695 1792698 1792724 AACCTCTTTTGAGGT TTCTGCAGAGCTTC ATGA GAGGTTTTGCAGAG TCTTTCTGATTTGGG TERM 1633 1792759 - 1792783 + F 77 -3.5 -5.08824 | opp_overlap 1792749 1792750 CAAAAGTGGGCTCAC GCACAAAACAT GAT GTGTATTGAGC TTTTTTAAATCGGAG TERM 1634 1793010 - 1792994 - g 81 -4.3 -5.0133 | overlap 1792996 CATGCCTTGAAAAAA GAGGCAT TCC ACGCCGC CGTTCTGGATATGGA TERM 1635 1793375 - 1793365 - g 78 -2.4 -5.06816 | ACGCGGCAACAAAAA CCCG GTT CTGG TATCGGTGGTGGTTA Rfer_1661 1792838 - 1793509 + | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 1636 1793525 - 1793557 + F 100 -21.3 -3.07816 | overlap 1793527 1793529 CGCTTGAAGTGTTGG CGCAGCGCGCCCTGC CAC GCAGGTCGCGCTGTG TTACATCAATGGCAA TERM 1637 1793527 - 1793555 + F 100 -20.3 -3.09878 | overlap 1793525 1793529 CTTGAAGTGTTGGCG CAGCGCGCCCTGC CAC GCAGGTCGCGCTG TGTTACATCAATGGC TERM 1638 1793529 - 1793553 + F 100 -17.1 -3.1082 | overlap 1793527 1793525 TGAAGTGTTGGCGCA GCGCGCCCTGC CAC GCAGGTCGCGC TGTGTTACATCAATG TERM 1639 1793598 - 1793615 + G 100 -11.3 -5.55855 | CCAACTTCCCCTTAA TGGCCCA CTCG TGGGCCA TTTTGTTTTTTTGCG Rfer_1662 1793597 - 1794274 + | peptidyl-tRNA hydrolase TERM 1640 1794610 - 1794590 - g 74 -3.2 -4.72986 | overlap 1794591 CACGCCGACGAAAAA GTCGCTGG AAAAG CCAGCAAG CGCCAAGACCCCAAA TERM 1641 1794721 - 1794672 - g 95 -2.9 -5.63012 | gap 1, overlap 1794675 AAAAAGAAAGAAAAA GAGTCTGACTATTTTGTCGCGCAG CTT CCGGGCGACAAAA-AGAAAAAATC GACGCTCAAAAAGAG Rfer_1663 1794315 - 1794767 + | hypothetical protein Rfer_1664 1795061 - 1794792 - | 4Fe-4S ferredoxin, iron-sulfur binding Rfer_1665 1797909 - 1795240 - | ATPase, E1-E2 type TERM 1642 1795640 - 1795629 - G 70 -4.4 -4.48823 | overlap 1795630 AACCAACCCACAAAA TGTG CTGC CACA GCCCGTTGACGAACA TERM 1643 1797533 - 1797570 + g 73 -9.7 -3.89346 | gap 1, overlap 1797491 CTGCGCAAGACGGTG GCCTGGGTGGCG-GCCAG TTG CTGGAGCGCCGCCATGGC TTTGTCAGCTCGCCA Rfer_1666 1798408 - 1797938 - | hypothetical protein Rfer_1667 1799036 - 1798536 - | coenzyme A biosynthesis protein Rfer_1668 1799783 - 1799121 - | hypothetical protein Rfer_1669 1800777 - 1799797 - | ribonuclease BN, putative Rfer_1670 1802269 - 1800854 - | peptidase M16-like TERM 1644 1802201 - 1802217 + g 100 -3 -5.9873 | gap 1, overlap 1802201 1802202 TGTAGCCCCCGTCCA T-GCTGC CCAA GCAGCTA TTTTTTTTATAGTAA TERM 1645 1802202 - 1802215 + g 81 -8.1 -4.6341 | overlap 1802201 1802201 GTAGCCCCCGTCCAT GCTGC CCAA GCAGC TATTTTTTTTATAGT Rfer_1671 1803798 - 1802269 - | peptidase M16-like TERM 1646 1802609 - 1802564 - G 75 -13.2 -2.90075 | gap 1, opp_overlap 1802563, overlap 1802562 TCCGCCTCAAGCACA CCG-TCGCGCGCTACGCGCGC GACTT GGGCGCGTAGCGCGAGCTCGA CTTGCTCGGCCGTCT TERM 1647 1802776 - 1802808 + g 100 -7 -5.86061 | gap 1 GTCCAGTACGGCCGC GAGCACGGTGAGCGC CAGC GCG-TCAGCGTTCTC TTTTTTTTCATCCAA TERM 1648 1804669 - 1804656 - g 70 -5.2 -4.56597 | overlap 1804658 CGCGTGGTGCAAAAA GCCG ACGCCA CGGC ACCGCATGAAATCCT Rfer_1672 1803828 - 1804922 + | signal recognition particle-docking protein FtsY TERM 1649 1805963 - 1805934 - g 73 -13.7 -2.74012 | gap 1, opp_overlap 1805952 TTACTATGCCAAGGA GCATGGCCGCA-AC CAG GTGTGCAGCCATGC CGCCCTGGTTGCCAG Rfer_1673 1804999 - 1806030 + | diguanylate cyclase TERM 1650 1806135 - 1806153 + G 70 -10.2 -3.51924 | opp_overlap 1806129 GAAATTGAATCGGCC CCGCAGCC CAC GGCTGCCG TTATCTGGCTGCACG TERM 1651 1806718 - 1806738 + G 75 -7.6 -4.25104 | ACAGCGTGCATCCGC GCGAAGTG GCCGA CATTTCGC TTTTCCTGGCCGACG Rfer_1674 1806093 - 1806764 + | carboxylesterase Rfer_1675 1806843 - 1807460 + | cobyrinic acid a,c-diamide synthase Rfer_1676 1807537 - 1807992 + | MaoC-like dehydratase Rfer_1677 1808454 - 1807969 - | tRNA/rRNA methyltransferase (SpoU) TERM 1652 1807995 - 1808005 + g 71 -8.2 -4.07687 | opp_overlap 1808002 GCACTACCCGTGATG CGCC AAA GGCG TTTTGGCGCCAGGCT Rfer_1678 1809156 - 1808464 - | ComF family protein Rfer_1679 1809209 - 1810096 + | hypothetical protein TERM 1653 1810437 - 1810447 + G 80 -3.2 -5.09204 | overlap 1810442 GTTCATGTTGATTCT TTGC ACG GCGA TTTTTGTTGCCGTGT Rfer_1680 1810240 - 1811448 + | cytochrome c oxidase, subunit II Rfer_1681 1811489 - 1813108 + | cytochrome-c oxidase TERM 1654 1813628 - 1813647 + G 74 -3.6 -4.8622 | GTGCAGGCCAGCACC CATTTCAA CAAG TTGGAGTG TTTTTGCTTCAAGCA Rfer_1682 1813271 - 1813843 + | cytochrome C oxidase assembly protein TERM 1655 1813874 - 1813884 + G 81 -4.6 -5.0133 | opp_overlap 1813867 AGACCAAACCGGTAG CGTC CGG GGCG TTTTTTCGCACCATC Rfer_1683 1813840 - 1814061 + | putative transmembrane protein Rfer_1684 1814117 - 1814998 + | cytochrome c oxidase, subunit III TERM 1656 1815024 - 1815039 + T 100 -10.4 -4.8622 | opp_overlap 1815021 1815024 GGCTGTGAAAAGGGA GGCACC GCAG GGTGCC TTTTTGATTGCCGCA Rfer_1685 1815289 - 1815068 - | hypothetical protein Rfer_1686 1815356 - 1816027 + | hypothetical protein Rfer_1687 1816074 - 1816760 + | hypothetical protein Rfer_1688 1816750 - 1817946 + | cytochrome oxidase assembly TERM 1657 1818454 - 1818471 + G 80 -3.3 -5.04733 | overlap 1818421 1818418 CCATGGCGGGCGACG TCGGCCC GGAA GCGCTGA TTTTGTTTCTGATTA TERM 1658 1818601 - 1818624 + G 75 -2.4 -4.9448 | ATGAGTTCACCCGCT TGATGGTG CTGCTCTA CACCTTCA TTTTGTTTGCTGCCT TERM 1659 1818690 - 1818710 + G 70 -3.9 -4.64844 | CTTTACCTGATTGCC GCCGTGGTT TTG AATCTTGGC TTTTGTCTGTATGCC Rfer_1689 1817943 - 1818839 + | protoheme IX farnesyltransferase TERM 1660 1819315 - 1819302 - g 90 -4.5 -5.31275 | overlap 1819303 GTCTATTACAAAAAA GTGGA GGGT CCCAC GCCCACCAGCTACTC Rfer_1690 1818846 - 1819451 + | electron transport protein SCO1/SenC Rfer_1691 1820705 - 1819713 - | hypothetical protein TERM 1661 1820313 - 1820262 - G 76 -6.5 -4.56597 | gap 3, opp_overlap 1820311, overlap 1820264 CGCCGCCGCCAAAAA GTCCTTGGCGCT--C-GCGCCGGGCG AGC CGACCGGCGCCGTCAACACCAGGGGC GACACGCCGATCAGG TERM 1662 1820599 - 1820627 + g 78 -7.4 -4.64766 | gap 1, opp_overlap 1820574, overlap 1820602 1820603 ATGCGCACCGTCCTG GTCGGCCAGGCCT GCAC AGGCTTGGC-GTC TTTTTGGCCTATAGC TERM 1663 1820602 - 1820625 + g 73 -8.8 -3.93817 | opp_overlap 1820574, overlap 1820599 1820603 CGCACCGTCCTGGTC GGCCAGGCCT GCAC AGGCTTGGCG TCTTTTTGGCCTATA TERM 1664 1820603 - 1820624 + g 70 -12.3 -2.95567 | opp_overlap 1820574, overlap 1820602 1820599 GCACCGTCCTGGTCG GCCAGGCCT GCAC AGGCTTGGC GTCTTTTTGGCCTAT TERM 1665 1820727 - 1820756 + r 95 -14.3 -3.48276 | gap 1, opp_overlap 1820727 CCCTTGAATGAAAAA TGCCCCTG-CGGGC CGT GGCCGTCAGGGGCA TTGTGTCGCAGGCGC TERM 1666 1820756 - 1820727 - R 100 -14.3 -4.8622 | gap 1, opp_overlap 1820727 CCCTTGAATGAAAAA TGCCCCTG-CGGGC CGT GGCCGTCAGGGGCA TTGTGTCGCAGGCGC Rfer_1692 1821719 - 1820778 - | sigma 32 (RpoH) TERM 1667 1821330 - 1821282 - G 80 -3.5 -5.0538 | opp_overlap 1821285, overlap 1821284 1821285 GCGCAGGTTAAAAAA GAGCTTGCGCTGGGCCTTGGTGG TCG CCACCTTGACCATGCGCCAGTTT TTCAGGATGTACTCG TERM 1668 1821285 - 1821327 + g 78 -7.4 -4.61231 | opp_overlap 1821284 1821282 1821285 CAGGTTAAAAAAGAG CTTGCGCTGGGCCTTGGTGG TCG CCACCTTGACCATGCGCCAG TTTTTCAGGATGTAC Rfer_1693 1822284 - 1823042 + | hypothetical protein Rfer_1694 1825158 - 1823122 - | integral membrane protein-like TERM 1669 1825389 - 1825374 - H 72 -4 -4.72272 | overlap 1825383 1825385 CCCTGGCACCAAAAA TGCAAT GAAG ACTGCA CCAAGCAGCTCAACC Rfer_1695 1825515 - 1825718 + | 4Fe-4S ferredoxin, iron-sulfur binding Rfer_1696 1826483 - 1825902 - | phenylacetic acid degradation-related protein Rfer_1697 1826512 - 1826994 + | MarR family transcriptional regulator TERM 1670 1827034 - 1827058 + GF 76 -9.9 -3.83502 | ATTTTCAGTCTGGTT GGTGCTGCTGG CGG CGGGCGGCACC TTTGCTCTGACGATG TERM 1671 1827411 - 1827441 + GF 70 -6.7 -4.12942 | overlap 1827413 CGGAAAAGCGCGGAC TCGCCACCGGCAT CGTTA ATGCCGGCGGCTC TTTTGGCCAGTTTGC TERM 1672 1827413 - 1827439 + GF 89 -13.7 -3.65832 | overlap 1827411 GAAAAGCGCGGACTC GCCACCGGCAT CGTTA ATGCCGGCGGC TCTTTTGGCCAGTTT TERM 1673 1827952 - 1827967 + GF 71 -5.4 -4.42062 | GCTGATCTTTGCGGC GGTCAT GGGC GTGACC TTTCTTTCAACCGTG Rfer_1698 1826942 - 1828225 + | major facilitator transporter TERM 1674 1828848 - 1828868 + G 72 -12.5 -3.06696 | CTCGGTGGCCGTATC CAGGCGGCA CAA TGCCGCCAG TGTCTTGCGCGAAGG Rfer_1699 1828546 - 1830231 + | NAD+ synthetase Rfer_1700 1830257 - 1830595 + | nitrogen regulatory protein P-II (GlnB, GlnK) TERM 1675 1831030 - 1831054 + G 81 -13.5 -3.27259 | overlap 1831051 GCGCCTGGACATGCC GGCGTTCGCCG AGC CGGTGACCGCC TTGATGGTGTCTGTG TERM 1676 1831528 - 1831547 + G 72 -2.8 -4.83269 | gap 1, overlap 1831529 CCAGGAGCTGCAGCA G-CTCGGCA CTC TGGCGAGTC TTTTTCCTGTCATGT Rfer_1701 1830743 - 1833106 + | hypothetical protein Rfer_1702 1833111 - 1834307 + | secretion protein HlyD Rfer_1703 1834531 - 1835361 + | Crp/FNR family transcriptional regulator Rfer_1704 1836043 - 1835471 - | methylated-DNA--protein-cysteine methyltransferase TERM 1677 1835747 - 1835737 - G 71 -8.2 -4.09685 | TCTCACCCGGCAAAA GGCG GCG CGCC AACTCGTAAACACGC Rfer_1706 1836967 - 1836557 - | cupin 2 protein TERM 1678 1837215 - 1837181 - R 72 -2 -4.93696 | opp_overlap 1837197 TTGAAAGATGAAAAA GCAGCGCTCGTCAT TGGTGTG ACGGCCATCGCTGC AACACTTGCTAACCA Rfer_1707 1837587 - 1837258 - | cupin 2 protein TERM 1679 1837635 - 1837679 + H 100 -14.4 -3.79021 | overlap 1837648 TTGATTATCGTGCGT CCATGGTCACGGTCGG-CGCAG ACC CTGCGGCCGG-TGTGCCCATGG TTTGATGCCGTTTTG TERM 1680 1838828 - 1838842 + G 70 -10 -3.53444 | ACTCGCCGGTGCCGA TCGGCA CCG TGCCGA TTTACCAGGCGCTGG TERM 1681 1838883 - 1838863 - g 76 -6.7 -4.57073 | CAGGCGCTGGAAAAA GTCGGCGGC GTG GCCGAAGAC CTGACCTGGGCAATC Rfer_1708 1837996 - 1839870 + | thiamine biosynthesis protein ThiC Rfer_1709 1841525 - 1839921 - | hypothetical protein TERM 1682 1841103 - 1841072 - G 70 -5 -4.57569 | overlap 1841073 TCATTGCTTCAAAAA CGGTGTCACGCCCG TCTT CGGCTTTGACACCA CGGGCCACCAGCACA TERM 1683 1841488 - 1841446 - G 83 -16.3 -3.01712 | GCGGCGCTGTCAACA GGCAGGCGCTCTGGCGCTG GCTCG CAGCGCAAGAACACCTGTC CATCCGCTTCCCGGA TERM 1684 1841562 - 1841583 + r 79 -7.3 -4.41348 | gap 1 TCCTATGGCGGTTCG CTGGACTGCG GTG TGCAG-CCAG TTTCTTTAACCCAAC Rfer_1710 1843040 - 1841589 - | argininosuccinate lyase TERM 1685 1842108 - 1842144 + g 84 -3.6 -5.18726 | gap 1 GTGGCCGACCACGCG CCCGGTCTTGCCGCG CGCCAGTT CG-GGTACGTCCGGG TTTTTCTTCTGCGGC TERM 1686 1843522 - 1843572 + G 83 -16.1 -3.01712 | gap 1, overlap 1843508 1843507 1843506 CGGCACCCTGGCTGG CCAGTGCGGCCAGCGGTGCC-CTG TTGT CGGCGGCGCTGGTGGCGGCGCTGG TGTTGCGCGCCAAAG Rfer_1711 1843128 - 1844171 + | histidine kinase internal protein Rfer_1712 1844191 - 1844931 + | LytR/AlgR family transcriptional regulator TERM 1687 1844995 - 1845043 + F 74 -4.5 -4.81551 | gap 1, opp_overlap 1844989, overlap 1844999 CAAGTCAAAGGGATC CGCTTGAACCCCCTC-GGCCAG CAATGC CTTGCCTGAAGTGGTTCATGTG TTTTTGATCTCCATG TERM 1688 1846640 - 1846589 - g 71 -7 -4.1964 | gap 1, overlap 1846602 1846603 TTTAACAGCGCAAAA CTG-CTGGGCACAACCCCGGCGGCC ACC GGCCACGTCGGTGGGGCCCAGGCCG ACGACACCAAGTGCG TERM 1689 1847533 - 1847520 - g 81 -8.1 -4.68705 | ACAATCCCAACAAAA CCAGC AGCG GCTGG TCTGCGGATTCGACC Rfer_1713 1845251 - 1848088 + | hypothetical protein Rfer_1714 1851256 - 1848383 - | phosphoenolpyruvate carboxylase TERM 1690 1849024 - 1848992 - G 80 -4.1 -5.14563 | overlap 1848993 1848995 1849021 CGTGGCAGCAAAAAA GTAGTCGGTGAAACC TGG GGTTTCATAGACCAG TTGCCGGTAGGCTGC TERM 1691 1849136 - 1849112 - G 85 -15.7 -3.14132 | opp_overlap 1849109 1849108 GGTGGGCTGGAGCAA GGTGGCCTCCA GCG TGGCGGCCACC AGGGTTTCGAGGTTG TERM 1692 1850661 - 1850674 + g 83 -2.3 -5.27779 | AGCAGCAGTTCGCGT GGCGT CAGG GCGTC TTTTTTGGTGTTCAC TERM 1693 1851656 - 1851666 + G 71 -8.2 -4.05033 | overlap 1851620 TGGAACGTGAAGACC CGCG CGA CGCG TTTGTGTCGAATCAA TERM 1694 1851807 - 1851863 + G 70 -10.8 -3.53811 | gap 1 GGGCAACCTGGACAC CCGGTTG-CGCAAGCTCGATGACGGTA TGTA TGCGGCCATTGTGCTGGCGGCAGCCGG TTTGAAGCGGCTCGG Rfer_1715 1851358 - 1852305 + | porphobilinogen deaminase TERM 1695 1852478 - 1852502 + G 100 -10.7 -5.50499 | overlap 1852480 ATGTGGGTGTCATGT TTGTCAGCGGC AAC GCCGTTGACTA TTTTTTTAGATCTAA TERM 1696 1852480 - 1852500 + G 100 -13.3 -4.38666 | overlap 1852478 GTGGGTGTCATGTTT GTCAGCGGC AAC GCCGTTGAC TATTTTTTTAGATCT Rfer_1716 1852306 - 1853127 + | uroporphyrinogen III synthase TERM 1697 1853315 - 1853366 + G 78 -13.7 -3.25802 | overlap 1853316 1853345 CGCGCTCAAGGCGCC GGCGGT-GCCGCGCTGGCAACGCCT GGCG GGGC-TGGCCACCGCGGCTACCGCG TTGCTGGCTTTGCTG TERM 1698 1853316 - 1853365 + G 83 -17.2 -2.54999 | overlap 1853315 1853345 GCGCTCAAGGCGCCG GCGGT-GCCGCGCTGGCAACGCCT GGCG GGGC-TGGCCACCGCGGCTACCGC GTTGCTGGCTTTGCT Rfer_1717 1853193 - 1854302 + | protein of unknown function DUF513, hemX TERM 1699 1854580 - 1854606 + G 70 -3.6 -4.63218 | overlap 1854581 CGTCGCTTTGCTCGA TGCCCTGTCG CACATGA TGGCGGGGCG TTTTATTCGGGCCAG TERM 1700 1855591 - 1855573 - g 73 -4.4 -4.59853 | overlap 1855574 GCAAGCCTGGAAAAA CGCGGCCA AGG CGGCAGCA AGCGCGTGACGCCCC Rfer_1718 1854311 - 1855600 + | hypothetical protein Rfer_1719 1855635 - 1856708 + | diguanylate cyclase TERM 1701 1856730 - 1856746 + T 100 -9.4 -5.28176 | opp_overlap 1856730, overlap 1856736 TGGGGCGTAAAAAAA GGGCAC TTGAC GTGCCC TTTTTTGTGGCTGCC TERM 1702 1856746 - 1856730 - T 100 -9.4 -5.40072 | opp_overlap 1856730 1856736 TGGGGCGTAAAAAAA GGGCAC TTGAC GTGCCC TTTTTTGTGGCTGCC Rfer_1720 1859805 - 1856782 - | ribonuclease TERM 1703 1858107 - 1858091 - G 70 -5.1 -4.46514 | overlap 1858094 AGCCAGCCAAAGAAA CCACC TTCTACC GGTGG CACTGGGGCCACGGA TERM 1704 1860053 - 1860032 - H 80 -9.3 -4.15453 | opp_overlap 1860047, overlap 1860033 CAATTCATGCCAAAA CGCGGCGCG CAAA CGCGCCCCA GGCAATTTTGAATCA TERM 1705 1860186 - 1860206 + H 70 -9 -3.68619 | TTGTCCTGCAGGCCA CTGCAAGC ATCTG GCTTGCGG TTTGCGTGCATTGGC TERM 1706 1860885 - 1860860 - g 93 -15.5 -3.53444 | opp_overlap 1860849 1860883, overlap 1860881 TGACCCGGCTGCAAA GCCAGTTTCGC GAGC GCGAAACCGGC AAGACCTATCTGGCC Rfer_1721 1860331 - 1861371 + | pseudouridine synthase, RluD Rfer_1722 1861349 - 1862035 + | HAD family hydrolase Rfer_1723 1862054 - 1862419 + | Rieske (2Fe-2S) protein TERM 1707 1862630 - 1862646 + G 82 -9.3 -4.38712 | overlap 1862632 ACCGAGCAGCGTTTG GCGCGCC GCT GGCGCAC TTTTATAAGGCTGGC TERM 1708 1862769 - 1862801 + G 86 -12.8 -3.93237 | gap 1, opp_overlap 1862769 1862762 AGATCAAAGGCGAAA TTGCGTCTGGCGCTG ACGC CAGCGC-GGACGCGA TTGTTGCTTCTTTGC Rfer_1724 1862420 - 1863490 + | peptidase S49 TERM 1709 1863480 - 1863502 + T 95 -14.8 -3.28712 | TTCAGTCGACGCCGA CGCTGCGCTG AAT CTGCGCAGCG TTGTCAACGACCCAG Rfer_1725 1864294 - 1863506 - | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 1710 1863544 - 1863569 + g 74 -3.1 -4.84363 | opp_overlap 1863526, overlap 1863546 CTGGCGTCGAATTGT CCAGCGGCGAG GATT TTTGCCGCCAG TTTTTGATGGTTTCG TERM 1711 1863707 - 1863720 + g 81 -5.9 -4.72986 | opp_overlap 1863707 TGTTTCAATAAACAA CTGGG TCTG CCCGG TTTTTAATGCCAGTG Rfer_1726 1864890 - 1864291 - | maf protein Rfer_1727 1864916 - 1865464 + | hypothetical protein rpmF 1865573 - 1865755 + | 50S ribosomal protein L32 TERM 1712 1865770 - 1865810 + F 100 -20.5 -4.26076 | opp_overlap 1865774, overlap 1865774 ATCGTTTTTTCTTAA CCAAGGCCCGAGGCTGCTA TGT TTGTAGCCTCGGGCCTTTG TTTTAATGCGCCTGG TERM 1713 1865774 - 1865806 + F 100 -19.9 -4.72007 | opp_overlap 1865774, overlap 1865770 TTTTTTCTTAACCAA GGCCCGAGGCTGCTA TGT TTGTAGCCTCGGGCC TTTGTTTTAATGCGC TERM 1714 1865806 - 1865774 - f 100 -17.7 -3.33696 | opp_overlap 1865770 1865774 TTTTTTCTTAACCAA GGCCCGAGGCTGCTA TGT TTGTAGCCTCGGGCC TTTGTTTTAATGCGC TERM 1715 1866580 - 1866596 + G 78 -2.9 -5.03314 | opp_overlap 1866565, overlap 1866581 GCCAGCGAGGGCTTG GCGACGA TGA TCGTTGA TTTTTTGAAAATGGA Rfer_1729 1865863 - 1866912 + | fatty acid/phospholipid synthesis protein PlsX Rfer_1730 1866916 - 1867893 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1716 1868546 - 1868566 + G 76 -6.7 -4.43911 | opp_overlap 1868523, overlap 1868548 CGCCAAGCGGGCCCT GTCGCTGCC CGT GTCAGCGCC TTTTCATTCCAGTTT Rfer_1731 1867956 - 1868915 + | malonyl CoA-acyl carrier protein transacylase TERM 1717 1869416 - 1869361 - g 80 -15.3 -3.05384 | gap 1 GGGTGCCTCAGGCAA CCCGGGGCAGGCCAACTACGC-CGCC GCCAA GGCGGGCGTGGCCGGCATGACCCGCG CGCTGGCCCGAGAGC Rfer_1732 1868912 - 1869658 + | 3-oxoacyl-(acyl-carrier-protein) reductase Rfer_1733 1869756 - 1869995 + | acyl carrier protein TERM 1718 1870062 - 1870078 + F 76 -10.9 -3.73953 | TGGGCTGCTTTGGCG CCAGTCT GCA AGACTGG TTTCATGCCGCTGCT Rfer_1734 1870133 - 1871380 + | beta-ketoacyl synthase Rfer_1735 1871384 - 1871896 + | hypothetical protein Rfer_1736 1871901 - 1872548 + | RNA polymerase sigma factor RpoE Rfer_1737 1872584 - 1873228 + | anti sigma-E protein RseA TERM 1719 1873417 - 1873441 + G 73 -9.9 -3.66139 | overlap 1873418 TTTGTGGTTGCGGGG GGAGGGCGCTT GTC AAGCGCCCGCA TTTGGCATGTCTGTG TERM 1720 1873418 - 1873440 + G 73 -13.4 -2.79202 | overlap 1873417 TTGTGGTTGCGGGGG GAGGGCGCTT GTC AAGCGCCCGC ATTTGGCATGTCTGT Rfer_1738 1873237 - 1874241 + | putative sigma E regulatory protein, MucB/RseB TERM 1721 1874611 - 1874601 - g 70 -3.2 -4.58283 | CAATGTTCCGAAAAA TCCG CAC CAGA CGCCGCCCAAGAATC Rfer_1739 1874317 - 1875798 + | peptidase S1C, Do TERM 1722 1875971 - 1875959 - f 73 -9.1 -3.87354 | TAAAGGCATATCAAA GGGGT TGG ACCCC ACGATGCGGGATAAT TERM 1723 1876187 - 1876211 + F 100 -16.5 -5.49234 | ATGATTGTTGGTTCA GGGCGCGTCAA AAC TTGACGTGCCC TTTTTTCTTGCCTCT TERM 1724 1878031 - 1878044 + G 70 -3.8 -4.66264 | TTGGATCGGTGTCCG TGCC GCAAGA GGCA TTTTTGGCGATTTTG Rfer_1740 1876263 - 1878074 + | GTP-binding protein LepA TERM 1725 1878388 - 1878406 + G 89 -6.6 -5.08601 | overlap 1878390 GACGGCGGGCTTGTT CCCGGTGA TCA TCGCCGTG TTTTTCTTGCGCTCG TERM 1726 1878390 - 1878404 + G 75 -7.8 -4.16909 | overlap 1878388 CGGCGGGCTTGTTCC CGGTGA TCA TCGCCG TGTTTTTCTTGCGCT Rfer_1741 1878074 - 1879039 + | peptidase S26A, signal peptidase I TERM 1727 1879074 - 1879089 + G 78 -2.5 -5.03715 | opp_overlap 1879071, overlap 1879071 1879072 TTCAGTTCAAATCCA GGCAG CGTGGT CTGTC TTTTTTGGGGCTCCT Rfer_1742 1879055 - 1879405 + | putative transmembrane protein Rfer_1743 1879429 - 1880115 + | ribonuclease III TERM 1728 1880200 - 1880172 - f 100 -19.1 -3.54424 | TTGGATGTCGCCAAA TCATCTGCTACTG AAT CAGTAGCAGATGA TGCAATAACGGCGGG TERM 1729 1880259 - 1880242 - f 83 -9.9 -4.18019 | AGAATGATATAGAAA GCATGCT CAAG AGCATGC GCGTGGGTGCGGCGG TERM 1730 1880436 - 1880450 + G 74 -7 -4.40605 | overlap 1880430 ACCGGCATTCACAGC CAGGGC GCG GCCCAG TTTGTGTTTGTCGAT TERM 1731 1880807 - 1880790 - g 70 -3.3 -4.58395 | overlap 1880792 GGCATCTGCGAAAAA TACCTGC CCGA GCAGGCC TGGTGGTACGCCGAA Rfer_1744 1880244 - 1881188 + | GTP-binding protein Era TERM 1732 1881374 - 1881362 - g 72 -2.7 -4.731 | overlap 1881363 AAGCGATGAACAAAA CTGAA GCT TTCAA CCAATTGCTGTTCCT Rfer_1745 1881352 - 1881954 + | phosphoesterase, PA-phosphatase related Rfer_1746 1882997 - 1882251 - | PE-PGRS family protein TERM 1733 1883157 - 1883204 + H 77 -8.6 -4.20368 | gap 1, opp_overlap 1883134 1883158 1883167, overlap 1883158 ACACAAGCGCAGTAT ACGTGGGAAATTATCACACATCA ACA TGC-GTGTGATAATTTCCCGCAC TTTATGTTAAAGTGA TERM 1734 1883203 - 1883158 - H 83 -14.3 -2.81471 | gap 1, opp_overlap 1883157 1883158, overlap 1883134 1883167 CACAAGCGCAGTATA CGTGGGAAATTATCACACATCA ACA TG-CGTGTGATAATTTCCCGCA CTTTATGTTAAAGTG TERM 1735 1883158 - 1883203 + H 76 -12.1 -3.11738 | gap 1, opp_overlap 1883134 1883158 1883167, overlap 1883157 CACAAGCGCAGTATA CGTGGGAAATTATCACACATCA ACA TGC-GTGTGATAATTTCCCGCA CTTTATGTTAAAGTG Rfer_1747 1883248 - 1884135 + | hypothetical protein Rfer_1748 1884119 - 1885360 + | hypothetical protein Rfer_1749 1885464 - 1885796 + | RelB antitoxin TERM 1736 1885813 - 1885798 - g 71 -5.4 -4.32649 | gap 1, overlap 1885800 ATGGCAAAAACTAAA GCGCGCA AGC TGCG-GC AGTTTGAGCCACTCA TERM 1737 1885988 - 1886008 + G 74 -6.2 -4.564 | gap 1 ACGGTCACCGCGAGT GCCATATCG GCGG CGAT-TGGC TTTTGATTTACCGTT Rfer_1750 1885783 - 1886103 + | hypothetical protein Rfer_1751 1886103 - 1886858 + | DNA repair protein RecO TERM 1738 1886914 - 1886888 - g 75 -7.9 -4.20918 | opp_overlap 1886896, overlap 1886907 GTCAACCTCAACAAA GTGGCGCTGGT GCGCA ACACGCGCCAC CTGGGCATCCCCAGC TERM 1739 1886896 - 1886947 + G 72 -11.5 -3.35679 | opp_overlap 1886888 1886907 CAACAAAGTGGCGCT GGTGCGCAACACGCGCCAC-CTGGG CATC CCCAGCGTGACGCGGGCGGC-CACC TTGTGCCTGCAGGCC TERM 1740 1886937 - 1886907 - g 83 -15.5 -3.01712 | gap 1, opp_overlap 1886896, overlap 1886888 CGCTGGTGCGCAACA CGCGCCAC-CTGGG CATC CCCAGCGTGACGCG GGCGGCCACCTTGTG Rfer_1752 1886855 - 1887613 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 1741 1887738 - 1887764 + G 87 -10.1 -4.36914 | gap 1, overlap 1887730 CTGGCAGGCGCGTAG CGCGCGCTG-GC CCGA GCGCGGCGTGCG TTTTCTGGCGACCCG acpS 1887610 - 1888002 + | 4'-phosphopantetheinyl transferase TERM 1742 1888408 - 1888423 + G 74 -5.4 -4.46926 | gap 1, opp_overlap 1888406, overlap 1888406 TGCGTGCCACCAACG CCGCCAG CGC CTG-CGG TTTTGTGCTGGGGTC Rfer_1754 1888083 - 1889177 + | Beta-N-acetylhexosaminidase TERM 1743 1889192 - 1889214 + T 72 -11.9 -2.65264 | overlap 1889203 GGGGGAACGGTGCAG GCGCGGCGC CGTCA GCGCCGCGA TCATGTCGGTGGTCG Rfer_1755 1889401 - 1889174 - | hypothetical protein TERM 1744 1889444 - 1889460 + H 73 -5.1 -4.57482 | opp_overlap 1889435 TTATAAGCCATTTTG GCACG TTGCCCT CGTGC TTTCTTTGTGAGTAG TERM 1745 1890061 - 1890092 + G 76 -7.2 -4.45696 | gap 1, overlap 1890062 1890064 1890082 CAGCGTGCCGGTGGA GGCCGCGCT-GCC GCTGCTG GGCTGGCGCGGCG TGTTTTTTCTTTGCG TERM 1746 1890064 - 1890094 + G 100 -6.6 -5.63517 | overlap 1890062 1890061 1890082 CGTGCCGGTGGAGGC CGCGCTGCCGCTGC TGG GCTGGCGCGGCGTG TTTTTTCTTTGCGCC TERM 1747 1890368 - 1890384 + G 89 -10.1 -4.70583 | CTGTTCTTGCTGGCG CTGGCCA TGC TGGCCGG TTTTCTCTTCGTGGC Rfer_1756 1889588 - 1890811 + | major facilitator transporter Rfer_1757 1890867 - 1891229 + | translation initiation factor SUI1 Rfer_1758 1891232 - 1891444 + | hypothetical protein Rfer_1759 1892559 - 1891456 - | sulphate transport system permease protein 1 TERM 1748 1892635 - 1892670 + r 83 -14.6 -2.85351 | CCCACTCACTCCCCC AACCCCTCTCCCGCCC CGCC GGGCGGAAGAGGGGGG TCTCATGTGGCCGCG Rfer_1760 1893808 - 1892942 - | Sulfate ABC transporter, permease protein CysW Rfer_1761 1894686 - 1893805 - | Sulfate ABC transporter, permease protein CysT TERM 1749 1894619 - 1894581 - G 93 -11.6 -4.42386 | opp_overlap 1894617, overlap 1894607 GGCTGAGGTAGAAAA GCGTGTAGCCGAGCGTCA GCT TGAAACCCGGCAGCACGC GCCGGGTGGCGCGTT TERM 1750 1894641 - 1894607 - G 82 -12.1 -3.57263 | gap 1, opp_overlap 1894617, overlap 1894581 AGCGTCAGCTTGAAA CCCGGCAGCACGCGCC GGGT GGCGCGTT-TGGCGGG CAAGCCACCCGCGAG TERM 1751 1894617 - 1894632 + g 74 -11.8 -3.53012 | opp_overlap 1894581 1894607 TGAAACCCGGCAGCA CGCGCC GGGT GGCGCG TTTGGCGGGCAAGCC Rfer_1762 1895746 - 1894748 - | thiosulphate-binding protein Rfer_1763 1896353 - 1895796 - | hypothetical protein Rfer_1764 1897265 - 1896558 - | hypothetical protein Rfer_1765 1898383 - 1897283 - | NmrA-like TERM 1752 1898267 - 1898305 + g 78 -6.5 -4.58283 | gap 1 CAAGGCGTCGCTGCG GGCGTCCACGCGGCGCAC CAGT GCGCGCACCG-GGAAGCC TTTTTCCAGCAATTG TERM 1753 1898460 - 1898435 - R 91 -2.5 -5.82316 | gap 1, overlap 1898438 1898439 ATGAGGTAAAAAAAA GCAGC-GAACCG ATT CAGTCCAGCCAC GTGCCGTACAAATGC Rfer_1766 1899038 - 1898448 - | TetR family transcriptional regulator Rfer_1767 1901579 - 1899429 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1754 1900035 - 1900050 + g 80 -10.4 -4.07568 | opp_overlap 1900015 TCGCAGCCATTGGCT CGCCTG TCGG CAGGCG TTTTCCAGCACCCAC Rfer_1768 1904677 - 1901576 - | multi-sensor hybrid histidine kinase TERM 1755 1901965 - 1901939 - G 74 -12.3 -3.14344 | gap 1 CAGTTCTTCGATCAA GCGGCGGCTGGC CTCG GCCAGC-GCCAC CGCGCCCAGATTGGC TERM 1756 1902010 - 1902024 + g 71 -5.6 -4.34482 | opp_overlap 1902010 1902009 GGGTATGGATCAAAT CGACGG CTT CGGTCG TGTTTTTTTCCGCCA TERM 1757 1904222 - 1904202 - G 78 -6.7 -4.67234 | overlap 1904204 1904205 ACGTAATTGGAAAAA TAGCGGCGC ATC GCGCCGATC GAGAGACTCACGATC TERM 1758 1904220 - 1904204 - G 73 -9.3 -3.94933 | overlap 1904202 1904205 GTAATTGGAAAAATA GCGGCGC ATC GCGCCGA TCGAGAGACTCACGA TERM 1759 1904219 - 1904205 - G 70 -12.8 -2.96237 | overlap 1904204 1904202 TAATTGGAAAAATAG CGGCGC ATC GCGCCG ATCGAGAGACTCACG TERM 1760 1904279 - 1904257 - G 75 -2.7 -5.0133 | gap 1, opp_overlap 1904257 CATCGGCGCAAAAAA TCAC-CACGG ATAT CAGTGTGTGA TGTTGAAATTCGAAT Rfer_1769 1905200 - 1906057 + | hypothetical protein Rfer_1770 1906867 - 1906073 - | lipoprotein YaeC TERM 1761 1906928 - 1906909 - R 71 -4.3 -4.5787 | CTATTAAAAAAAATA GTGCCAT ATGTAG ATGACAC GGGGGCTAGAGGGCT Rfer_1771 1907618 - 1906953 - | binding-protein-dependent transport systems inner membrane component TERM 1762 1907346 - 1907301 - G 78 -10.2 -3.86015 | overlap 1907302 CAGCCGGGCCACAAA GGGCGCCGCCGCCACGGTGA GCGGCA CCACCGCGGCTGCCGTGCCG ATGGAGGAACCGGTG TERM 1763 1907345 - 1907302 - G 75 -13.7 -2.91395 | overlap 1907301 AGCCGGGCCACAAAG GGCGCCGCCGCCACGGTGA GCGGCA CCACCGCGGCTGCCGTGCC GATGGAGGAACCGGT Rfer_1772 1908657 - 1907611 - | ABC transporter related TERM 1764 1907866 - 1907834 - G 70 -9.8 -3.55444 | gap 1, overlap 1907838 CCGTCACCGGCGAAA GCCA-GGCGCAGCAG CTGG CCGCTGCGCTGCGGC TCGGCCGCCATCAGC TERM 1765 1908193 - 1908219 + g 91 -13.6 -3.85817 | opp_overlap 1908178 CTTGGGCTTGCTGGC CAGCGCCCGGGC AAT GCCCACGCGCTG TTTCTGGCCACCGCT Rfer_1773 1910007 - 1908661 - | putative nitrilotriacetate monooxygenase component A protein TERM 1766 1909283 - 1909265 - G 70 -3.1 -4.62336 | opp_overlap 1909265, overlap 1909242 AGTTCACGGTAAAAA GCCTG CGCATCTTC CAGGC TTTGCTGGGCGGTGA TERM 1767 1909795 - 1909765 - G 74 -11 -3.51633 | overlap 1909767 1909783 AGAGAGGGCAGAGAA CAGCGTCACCGGCT CAA AGCCGGTGCTGCGG TCGCGCCGGCCCGCA TERM 1768 1909793 - 1909767 - G 76 -12.2 -3.32966 | overlap 1909765 1909783 AGAGGGCAGAGAACA GCGTCACCGGCT CAA AGCCGGTGCTGC GGTCGCGCCGGCCCG Rfer_1774 1910249 - 1910034 - | molybdenum-pterin binding domain-containing protein TERM 1769 1910330 - 1910284 - R 80 -9.2 -4.18465 | opp_overlap 1910320, overlap 1910285 1910310 CGTTAAAAAATAGAA GTGGTCAGACGGCCCAGCGCAC ACC ATGCGCTGGCACGCCGGGCCAG CGGGGTTCGCCGTCA TERM 1770 1910329 - 1910285 - R 81 -12.7 -3.09995 | opp_overlap 1910320, overlap 1910284 1910310 GTTAAAAAATAGAAG TGGTCAGACGGCCCAGCGCAC ACC ATGCGCTGGCACGCCGGGCCA GCGGGGTTCGCCGTC Rfer_1775 1911124 - 1910288 - | ABC transporter related Rfer_1776 1912069 - 1911185 - | binding-protein-dependent transport systems inner membrane component Rfer_1777 1913243 - 1912101 - | alkanesulfonate monooxygenase Rfer_1778 1914304 - 1913273 - | ABC transporter, substrate-binding protein, aliphatic sulphonates TERM 1771 1914334 - 1914363 + r 74 -2.1 -5.03314 | gap 1, opp_overlap 1914339, overlap 1914335 GATCGTTCAACCCAG ATCAACC-GGTGCG GCG TGCAGCAGGTTGAG TTTTTTCGGGATGAG Rfer_1779 1915287 - 1914325 - | ABC transporter, substrate-binding protein, aliphatic sulphonates TERM 1772 1915107 - 1915117 + g 71 -8.2 -4.09685 | TGCCCACACCCAACG GCGC CAG GCGC TTTTCCAGCGTGCCC TERM 1773 1915143 - 1915158 + g 78 -4.6 -4.7254 | opp_overlap 1915154 1915156 TGCCCCGGGCTTTGA GGATGG ACAA CCAGCC TTTTTGATGGCCGAT TERM 1774 1915167 - 1915192 + g 100 -13.3 -4.36914 | gap 1, opp_overlap 1915156 1915154 ACCAGCCTTTTTGAT GGCCGATGCGCA GCG TGCGCG-CGGCC TTTTGTGCCAGCGCC TERM 1775 1915394 - 1915366 - R 90 -16.7 -2.71263 | AAGGGGGGGGAAGGA GGTCGTCAGCCTC TTG GGGGCCGACGACC GGGGCGCTTACACGC Rfer_1780 1915992 - 1915402 - | NADPH-dependent FMN reductase Rfer_1781 1917077 - 1916043 - | thiosulphate-binding protein TERM 1776 1916729 - 1916751 + g 78 -4.6 -4.82901 | opp_overlap 1916745, overlap 1916730 GCAGACGCTTTTGCC AGTCGGCCGG AAT CCAGCCGCCG TTTTTGTGAACAGCG TERM 1777 1917038 - 1917016 - G 73 -13.4 -2.78816 | overlap 1916998 GCACCGGCCAGCACA GCGGCTGCAG CGA CTGCAGCGGC GTTGAAAATGCGGCG Rfer_1782 1918715 - 1917195 - | hypothetical protein TERM 1778 1918213 - 1918234 + g 73 -8.7 -3.87815 | overlap 1918216 GTCAGAGCGTCGAAG TTGTCGCGC ATCG GCGCGATGA TTTGTGCCGGTGAGC Rfer_1783 1919312 - 1918743 - | hypothetical protein Rfer_1784 1920918 - 1919356 - | lysyl-tRNA synthetase TERM 1779 1921153 - 1921175 + G 78 -4.7 -4.81359 | overlap 1921159 ATTCCCATGTCAAGC CGCTCGGGC AATCC GCTGGGGCG TTTTGTCTTTGCCTT Rfer_1785 1921045 - 1921611 + | protein of unknown function YGGT Rfer_1786 1922984 - 1922112 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Rfer_1787 1923938 - 1923117 - | tryptophan synthase subunit alpha Rfer_1788 1925242 - 1923935 - | tryptophan synthase subunit beta TERM 1780 1924060 - 1924031 - G 70 -3.3 -4.63218 | opp_overlap 1924047, overlap 1924033 CGGGCGGCAATAAAA GTCGGCGTGGCTG AGGT CGGCCACGGTGCC GATGTCCTTGTCGCC Rfer_1789 1925969 - 1925235 - | phosphoribosylanthranilate isomerase TERM 1781 1925887 - 1925851 - G 76 -5.8 -4.64846 | overlap 1925823 1925852 GCATAAAGCACAAAA CCGACGGCATCCGC-GCC TGC GGCCACGG-CGGCGTCGA CATCCTGTTCGCGTG Rfer_1790 1926748 - 1925966 - | tRNA pseudouridine synthase A TERM 1782 1926097 - 1926118 + g 80 -3.7 -5.15969 | gap 1 TGCGCGCCAGCAGCA CCTCTTTGAG CCA CTCGG-GAGG TTTTTTGCCTTGGCC Rfer_1791 1929431 - 1926798 - | peptidoglycan-binding LysM TERM 1783 1927953 - 1927967 + g 93 -11.4 -4.35885 | opp_overlap 1927933 1927952 1927951 1927948 1927947 GTCCAGAAATGAACT GTCGCC CGA GGCGAC TTTCTTGTGCTGCCT TERM 1784 1929389 - 1929400 + g 75 -2.2 -5.00884 | GCGCAGCAGCCGCAA TTGC CATG GCAG TTTTTTGCCAACGAT Rfer_1792 1930812 - 1929673 - | aspartate-semialdehyde dehydrogenase TERM 1785 1930064 - 1930025 - G 71 -7.6 -4.08216 | opp_overlap 1930023 TCAGCCGTGCCAAAA GCGGCGCCCTGGCCCAGA ATCT TGTTGGTCTCGGCGCCGC CCTTCCATTCTTCGC TERM 1786 1930852 - 1930890 + r 87 -15.9 -2.90714 | opp_overlap 1930844, overlap 1930888 ACAGGAATTTCATCT GCCCGGCTCGTCTGGCC GGTGG GGCGCGACGAACCGGGC TGTGTCAGCCTTTAA TERM 1787 1930888 - 1930900 + r 73 -9.1 -3.87346 | opp_overlap 1930844, overlap 1930852 1930896 GGGCGCGACGAACCG GGCTG TGT CAGCC TTTAATGGTTGTCGT Rfer_1793 1932101 - 1931031 - | 3-isopropylmalate dehydrogenase leuD 1932786 - 1932136 - | isopropylmalate isomerase small subunit TERM 1788 1932406 - 1932418 + g 76 -6.2 -4.62302 | opp_overlap 1932406 1932405 TTCGCTCAGCACAAT CGGC AGCAA GCCG TTTTTGAAGCTGTTG TERM 1789 1932720 - 1932733 + g 71 -8.1 -4.11692 | GCTTGGGAATGATGG CGTCG GTAT CGACG TTTTCGCGGTCCATC Rfer_1795 1934282 - 1932810 - | isopropylmalate isomerase large subunit TERM 1790 1933266 - 1933286 + g 85 -3.9 -5.38054 | overlap 1933256 CAGTGCGCGTTCGAT GGCGCCG CGTTTGT TGGCGTC TTTTTCTTTGTCGGG TERM 1791 1933654 - 1933675 + g 71 -7.9 -4.12188 | overlap 1933655 AATTCAATGGTGTAG CCGGTGCCG CCTG CGGTACCGA TTTTGCCGATGATGG TERM 1792 1934335 - 1934392 + r 74 -9.8 -3.63968 | gap 2, opp_overlap 1934316 1934349, overlap 1934336 CGGTAAAACCATTGC GCCTGACAGC-AAAACGCCCGCCGG-TG TTGC CATCCGGCGGGCGCTTCAGATGACAGGG TTTCAGCGTTTGGAA TERM 1793 1934336 - 1934391 + r 79 -13.3 -2.7806 | gap 2, opp_overlap 1934316 1934349, overlap 1934335 GGTAAAACCATTGCG CCTGACAGC-AAAACGCCCGCCGG-TG TTGC CATCCGGCGGGCGCTTCAGATGACAGG GTTTCAGCGTTTGGA TERM 1794 1934377 - 1934349 - R 100 -18.2 -4.34402 | gap 1, opp_overlap 1934336 1934335 CGCCTGACAGCAAAA CGCCCGCCGG-TG TTGC CATCCGGCGGGCG CTTCAGATGACAGGG gltA 1935705 - 1934395 - | type II citrate synthase Rfer_1797 1936032 - 1935709 - | hypothetical protein Rfer_1798 1936743 - 1936039 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein Rfer_1799 1938603 - 1936798 - | succinate dehydrogenase, flavoprotein subunit TERM 1795 1937922 - 1937897 - G 74 -11.1 -3.53811 | TCCATGTCTTGCAAA GGAATGCCGGC GCGA GCCGCCATCCC CAGCCCATCACCCGT TERM 1796 1938167 - 1938204 + g 70 -3.9 -4.60889 | gap 1, opp_overlap 1938147 TGCAGCATGGCATGA CCTGTGCGGTCCGCC-GC TGC GCAGGCGCGCCCAACTGG TTTTTCGCCATAGTT Rfer_1800 1939061 - 1938696 - | succinate dehydrogenase, cytochrome b subunit Rfer_1801 1939556 - 1939113 - | succinate dehydrogenase, cytochrome b subunit Rfer_1802 1940556 - 1939762 - | GntR family transcriptional regulator TERM 1797 1941673 - 1941651 - g 73 -13.4 -2.74701 | opp_overlap 1941654, overlap 1941648 1941655 AGAGCTGCAAGACGA GCAAGCGGGC GTG GCCCACCTGC TGTAAGAAAGTCTGC Rfer_1803 1940692 - 1941678 + | malate dehydrogenase TERM 1798 1941874 - 1941925 + G 85 -6.5 -4.8048 | opp_overlap 1941879 1941881, overlap 1941864 1941861 1941876 1941879 GTCGAGGCGCTGATG ATCAAGAGCCTGGCTTTGCAGGC TGAAAT GTCTGCGGAGTTTGGCTCTTGTG TTTTTGATGTCACGC TERM 1799 1941876 - 1941923 + G 95 -13.5 -4.02302 | opp_overlap 1941879 1941881, overlap 1941864 1941861 1941874 1941879 CGAGGCGCTGATGAT CAAGAGCCTGGCTTTGCAGGC TGAAAT GTCTGCGGAGTTTGGCTCTTG TGTTTTTGATGTCAC TERM 1800 1941879 - 1941920 + G 76 -9.4 -4.1193 | opp_overlap 1941879 1941881, overlap 1941864 1941861 1941876 1941874 GGCGCTGATGATCAA GAGCCTGGCTTTGCAGGC TGAAAT GTCTGCGGAGTTTGGCTC TTGTGTTTTTGATGT TERM 1801 1942713 - 1942748 + G 70 -3.2 -4.58663 | opp_overlap 1942723, overlap 1942716 GGCGCCGATCTCTTA TGGCGGTAAATTGCAC GACC GTGCCAGCTACCGTTA TTTTTGGCAAGTGCT Rfer_1804 1941784 - 1942848 + | putative citrate lyase beta subunit Rfer_1805 1942839 - 1943540 + | hypothetical protein TERM 1802 1944232 - 1944219 - g 77 -3.8 -4.87665 | opp_overlap 1944219 GGCGATGCACAAAAA TGCC CGCCCC GGCA TCGTTCCCGAAGAAG TERM 1803 1944426 - 1944448 + G 74 -6.9 -4.36914 | TTTCGGTGGTGTCTG TCTGGGCGG CAAGA TCGCCCCGA TTTTCTACAACACCA Rfer_1806 1943608 - 1946205 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Rfer_1807 1946740 - 1946279 - | integral membrane protein-like Rfer_1808 1947186 - 1946902 - | hypothetical protein Rfer_1809 1947477 - 1947286 - | 4-oxalocrotonate tautomerase TERM 1804 1947400 - 1947421 + g 83 -2.9 -5.29716 | CACTTCAACGGTGAC GCGGGTG ATTTCTGC CACCAGC TTTTTCTTCTGTTCG Rfer_1810 1947937 - 1947515 - | protein of unknown function DUF395, YeeE/YedE Rfer_1811 1948407 - 1947934 - | protein of unknown function DUF395, YeeE/YedE Rfer_1812 1949118 - 1948432 - | hypothetical protein Rfer_1813 1949232 - 1950320 + | NADH:flavin oxidoreductase/NADH oxidase TERM 1805 1950795 - 1950811 + G 79 -9.3 -4.15044 | GGCAGAGGGCTACGG CGGGGGC TAT GCGCCCG TTTATTACCAGCGAG Rfer_1814 1950373 - 1950870 + | hypothetical protein TERM 1806 1950999 - 1950983 - f 74 -9.5 -3.65522 | GATGCAGGGCAACAA TGAACTC TTT GAGTTCA TCTACAAAGTCGGGA Rfer_1815 1951021 - 1951620 + | hypothetical protein TERM 1807 1951653 - 1951624 - T 77 -11.5 -3.61398 | gap 1, overlap 1951626 GGTCGGCGTTAAGAA CA-CGTCAGGCGCT CAC AGCGCCTGAGGCTG CTGCGCCGTCAAGCC TERM 1808 1951650 - 1951626 - T 95 -14.3 -3.38812 | overlap 1951624 TCGGCGTTAAGAACA CGTCAGGCGCT CAC AGCGCCTGAGG CTGCTGCGCCGTCAA Rfer_1816 1951896 - 1951636 - | hypothetical protein Rfer_1817 1952146 - 1951898 - | hypothetical protein Rfer_1818 1952683 - 1952201 - | hypothetical protein Rfer_1819 1953775 - 1952849 - | restriction endonuclease Rfer_1821 1957177 - 1955225 - | XRE family transcriptional regulator Rfer_1822 1958011 - 1957190 - | DNA adenine methylase TERM 1809 1957681 - 1957671 - G 81 -8.2 -4.64844 | overlap 1957672 TTGAGATAGAGAAAA CGCG CGG CGCG CTCCACCTTGGTCAG Rfer_1823 1960261 - 1958399 - | glutaminyl-tRNA synthetase Rfer_1824 1960294 - 1961430 + | hypothetical protein Rfer_1825 1964066 - 1961427 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1810 1962697 - 1962680 - G 72 -2.7 -4.82901 | CCCGTTCGAGAAAAA GACTG CGGTTGGC CAGTC CCGTGAGCACGTCGT Rfer_1826 1964509 - 1964063 - | response regulator receiver domain-containing protein Rfer_1827 1965965 - 1964484 - | periplasmic sensor signal transduction histidine kinase TERM 1811 1965373 - 1965319 - GR 75 -2.7 -4.90079 | overlap 1965321 ATGTCAAGAACAAAA TTCCAATTGCCC-GCGGCAACGTGGCG CGT CGCCT-GCTGGAGCTGGGCGATCGGCA TCAGCACGCCGCGTC Rfer_1828 1967034 - 1966342 - | peptidase S16, lon-like TERM 1812 1967530 - 1967518 - g 100 -3.3 -5.7946 | GCGGCAAGAAAAAAA TCCGG CGG CCGTA CGAATTCATGACGTG Rfer_1829 1967111 - 1967944 + | undecaprenol kinase, putative Rfer_1830 1968784 - 1967972 - | alpha/beta hydrolase Rfer_1831 1969611 - 1968784 - | hypothetical protein Rfer_1832 1972325 - 1969677 - | DNA mismatch repair protein MutS TERM 1813 1971737 - 1971704 - G 80 -14.5 -2.99471 | gap 1, overlap 1971676 1971675 GCACGCTGACAGATA CCGCGCCCGCG-AGCG GCG CGCCACGCAGGCGCGC TTCAAAAGTCGGTGT TERM 1814 1972637 - 1972610 - R 74 -7.6 -4.08767 | gap 1 GCTACGCCCTGAAAA CCCCCGCG-CGAC GTT GCCATCGCGGGTG AAGCAGGTCACCCGT Rfer_1835 1973502 - 1972786 - | ABC transporter related Rfer_1836 1975466 - 1973520 - | ABC transporter related TERM 1815 1974403 - 1974385 - G 84 -11 -4.07568 | GCGGGTTTGGCAAAA CGCGCGAA CAG TTCACGCG CAAAACCCACAACAC TERM 1816 1974531 - 1974507 - G 79 -7.7 -4.55798 | overlap 1974508 CAGCCTAAAGGAAAA CCCCGCCATGG CCA CCGTGGCGAGC ACGGGCACGGCCAAC TERM 1817 1974530 - 1974508 - G 72 -11.2 -3.32756 | overlap 1974507 AGCCTAAAGGAAAAC CCCGCCATGG CCA CCGTGGCGAG CACGGGCACGGCCAA Rfer_1837 1976372 - 1975482 - | inner-membrane translocator TERM 1818 1976141 - 1976131 - G 77 -8.2 -4.40358 | ATCCACTCCACAAAA GCGC CTT GCGC TGCGCCAAAGAGGGC TERM 1819 1976457 - 1976411 - R 73 -5.8 -4.38712 | opp_overlap 1976420 1976429, overlap 1976413 1976416 GTGATCCTGAGAAAA GAGGACTGAGTTCAAGAAGCCA GGA TGGCTCCTTGAACTCGGTTAAG ACTCCAAGCGTTGAT TERM 1820 1976455 - 1976413 - R 90 -12.8 -3.80133 | opp_overlap 1976420 1976429, overlap 1976411 1976416 GATCCTGAGAAAAGA GGACTGAGTTCAAGAAGCCA GGA TGGCTCCTTGAACTCGGTTA AGACTCCAAGCGTTG TERM 1821 1976452 - 1976416 - R 100 -18.9 -2.98387 | opp_overlap 1976420 1976429, overlap 1976413 1976411 CCTGAGAAAAGAGGA CTGAGTTCAAGAAGCCA GGA TGGCTCCTTGAACTCGG TTAAGACTCCAAGCG TERM 1822 1976420 - 1976448 + r 83 -14.7 -2.53263 | opp_overlap 1976416 1976413 1976411, overlap 1976429 AGAAAAGAGGACTGA GTTCAAGAAGCCA GGA TGGCTCCTTGAAC TCGGTTAAGACTCCA Rfer_1838 1977671 - 1976472 - | extracellular ligand-binding receptor TERM 1823 1977091 - 1977107 + g 78 -6.5 -4.59773 | overlap 1977092 GCAACAGGGGTAATG CCCTTGG CAG CCAAGGC TTTTTCCAGATCAGC TERM 1824 1977356 - 1977339 - G 71 -8.4 -4.07568 | opp_overlap 1977348 GGCTTCCTGGTAAAA GCGCTG TGACGC CAGCGC TACGCCGGAGTTGAT TERM 1825 1977382 - 1977392 + g 95 -6.8 -5.48514 | TTGATGTAGCCCACC GTGG CCA CCAC TTTTTCTTTGTTGAT Rfer_1839 1978373 - 1977711 - | GntR family transcriptional regulator Rfer_1840 1978549 - 1979565 + | TRAP dicarboxylate transporter- DctP subunit TERM 1826 1979727 - 1979741 + G 93 -7.8 -5.03314 | GTCTTGACTTATTCG GTGGCG ACG CGCTAC TTTTTTAAAACTGCC Rfer_1841 1979634 - 1980131 + | tripartite ATP-independent periplasmic transporter DctQ Rfer_1842 1980128 - 1981477 + | TRAP dicarboxylate transporter- DctM subunit TERM 1827 1981537 - 1981549 + G 73 -10.5 -3.69216 | overlap 1981535 GTGCGCAGCGGCTGG GCCGC GCT GCGGC TGTTTTGGGTACACG Rfer_1843 1981479 - 1983155 + | alpha subunit of malonate decarboxylase Rfer_1844 1983173 - 1983505 + | malonate decarboxylase delta subunit Rfer_1845 1983502 - 1984389 + | malonate decarboxylase subunit beta Rfer_1846 1984386 - 1985084 + | malonate decarboxylase gamma subunit Rfer_1847 1985113 - 1985808 + | malonate decarboxylase TERM 1828 1986273 - 1986253 - g 79 -12.5 -3.53444 | overlap 1986254 CGACCTGGGGCGAAA CCCTGGCGC ACC GTGCCAGGG CGGCGCGCCTGGCAG Rfer_1848 1985817 - 1986773 + | triphosphoribosyl-dephospho-CoA synthase Rfer_1849 1986770 - 1987693 + | (Acyl-carrier protein) S-malonyltransferase TERM 1829 1989361 - 1989304 - g 95 -17.8 -3.34398 | gap 1, overlap 1989302 1989307 CGCCGCCGGCAAAGA GTATCGCGCCACGGAAGATGGCGCCAC CGCCC ATGGCGCCACCTGCCATGGCGCCAC-C TGCCATGGCGGGGGC TERM 1830 1989359 - 1989307 - g 100 -22.8 -2.84325 | overlap 1989302 1989304 CGCCGGCAAAGAGTA TCGCGCCACGGAAGATGGCGCCAC CGCCC ATGGCGCCACCTGCCATGGCGCCA CCTGCCATGGCGGGG TERM 1831 1989847 - 1989893 + G 74 -6.6 -4.32857 | gap 2, opp_overlap 1989859 GGGTTCAGGCCAGTC GACGCGAAGTGATCGAGCTGGC GGACA GCCAGC-CGGTCGATGC-CGTC TTTGTCTTTGGCGAC TERM 1832 1990088 - 1990056 - g 72 -13.4 -2.62463 | overlap 1990055 TTCACGACCGAGAAG CTGGTCGTGCGGCG GCAGG CGGCGCAGGACCAG GCCGGTATTGCGGAA Rfer_1850 1987893 - 1991150 + | hypothetical protein Rfer_1851 1991172 - 1992380 + | hypothetical protein Rfer_1852 1992481 - 1993491 + | patatin Rfer_1853 1995123 - 1993561 - | hypothetical protein TERM 1833 1993622 - 1993636 + g 73 -10 -3.61398 | opp_overlap 1993633 CACCAGTTGCGTCCC GCGCTT CCA AAGCGC TTGTTGACGGCGCCG TERM 1834 1994142 - 1994183 + g 72 -13.5 -2.52896 | CATTTGGATCGCGTG TCGGCCGCCCGGCCTCGCC GATC GGCGAAGCCAAGCCGCCGG TCGATTGGCGCGTGG TERM 1835 1995365 - 1995378 + H 78 -2.3 -5.24129 | TGCTGTACCCCGTGC GTCGA AACC TCGTC TTTTTTGTGCACGGA TERM 1836 1995779 - 1995794 + G 100 -4.6 -5.79595 | overlap 1995766 1995780 ACCTGTATCCGGAGT ACACCG GCAA CGGTGC TTTTTTCTTTTCCGA TERM 1837 1995780 - 1995793 + G 71 -8.1 -4.0613 | overlap 1995766 1995779 CCTGTATCCGGAGTA CACCG GCAA CGGTG CTTTTTTCTTTTCCG TERM 1838 1995845 - 1995819 - g 95 -7.2 -5.52384 | TTCCGATGAAAAAAA CCCGGCCTGG AAAAACG CCAAGGCGGG TTACGAGCTGGTGAA Rfer_1854 1995526 - 1996452 + | substrate-binding region of ABC-type glycine betaine transport system TERM 1839 1996531 - 1996562 + G 70 -4.3 -4.56597 | TGGCTGTGCTGGTCC TGGCTGGCCTGGT TGCAGC GCTGGGCTTGCCA TTTTTGACGCACGCG Rfer_1855 1996497 - 1997675 + | binding-protein-dependent transport systems inner membrane component TERM 1840 1998449 - 1998416 - g 79 -12.3 -3.53012 | opp_overlap 1998422 TGCTGGGCCTGCAAA GCGTGGCCACGCGCC TGCG GGCGGGCGAGCACGC CGCTGGCGCGCCGGT Rfer_1856 1997668 - 1998600 + | ABC transporter related Rfer_1857 1998597 - 1999367 + | binding-protein-dependent transport systems inner membrane component Rfer_1858 1999595 - 1999356 - | hypothetical protein TERM 1841 1999495 - 1999507 + g 80 -3.3 -5.10461 | opp_overlap 1999495 1999496, overlap 1999496 GCGCAGTATTTATAA GGGCT TAT AGCCA TTTTTGTTCCATAAA Rfer_1859 1999727 - 2000080 + | HesB/YadR/YfhF TERM 1842 2001039 - 2001051 + G 73 -4.8 -4.67982 | opp_overlap 2001039, overlap 2001033 TCTGATGGGCGACAA CTCG GTGGG CGAG TTTTATTCAGTGGCG Rfer_1860 2000077 - 2001513 + | cysteine desulfurase activator complex subunit SufB TERM 1843 2001760 - 2001771 + G 75 -2.2 -4.89393 | gap 1, overlap 2001758 2001765 CCCCTGAAATGCGCG C-CCG TGC CGGTG TTTTTCTGGCCTTTC Rfer_1861 2001510 - 2002301 + | FeS assembly ATPase SufC TERM 1844 2002450 - 2002410 - g 72 -11.8 -3.33009 | gap 1, overlap 2002401 2002400 CAAAATGGCTCACAA CGT-TGCGCGCCCAGGCAC TGGA GCGCGTGGGCGCACTGACG CTGCCCAGCACGCAC TERM 1845 2002748 - 2002764 + G 93 -7.9 -5.02074 | CATGATGCATTGTTT GCGGCGT TGA ACACCGC TTTTTTGCAGGATGC Rfer_1862 2002298 - 2003626 + | FeS assembly protein SufD Rfer_1863 2003623 - 2004873 + | SufS subfamily cysteine desulfurase TERM 1846 2005200 - 2005214 + G 76 -9.2 -4.09864 | opp_overlap 2005189 GACAGCCCGCATATC GGCCGC TTG GCGGTC TTTTCCGGCATCAGT Rfer_1864 2004870 - 2005358 + | SUF system FeS assembly protein TERM 1847 2005669 - 2005680 + G 76 -7.2 -4.56597 | overlap 2005643 CAGCCAGTGAGCAGT CGGC TGCA GCCG TTTTTGAAGCGCGGG Rfer_1865 2005389 - 2005949 + | nitrogen-fixing NifU-like Rfer_1866 2005988 - 2006452 + | BadM/Rrf2 family transcriptional regulator TERM 1848 2006923 - 2006907 - g 79 -9.4 -4.17762 | overlap 2006904 CATTCCGGAAAAGAA CGCGGT TCTGC ACCGCG GTGGCTGGGTCAAGA TERM 1849 2007015 - 2007043 + G 70 -12.3 -2.84325 | opp_overlap 2007012, overlap 2007012 2007011 CGGCACACAAATTGG CGTGCTGGCCGAG CAG CTCGGCATGCGCG TGATATTTACCGACA Rfer_1867 2006503 - 2007744 + | D-3-phosphoglycerate dehydrogenase TERM 1850 2007872 - 2007892 + G 81 -6.2 -4.7254 | gap 1, overlap 2007873 CATGCTCGAACGAGC GTT-CACCG CACC CGGTGGAAC TTTTTGGTGAGGACT Rfer_1868 2007772 - 2008002 + | hypothetical protein Rfer_1869 2008713 - 2008018 - | two component LuxR family transcriptional regulator TERM 1851 2008390 - 2008429 + g 74 -5.5 -4.43681 | gap 1, opp_overlap 2008393, overlap 2008391 2008393 GATGGTTTTAAGGAG ATACCCGGCGGCGCCGCC GCGCA GG-GCCGCCGCCAGGTCG TTTTCATCTTCGCTG TERM 1852 2008426 - 2008393 - G 76 -13.8 -3.00298 | gap 1, opp_overlap 2008393 2008391 2008390 GGTTTTAAGGAGATA CCCGGCGGCGCCGCC GCGCA GG-GCCGCCGCCAGG TCGTTTTCATCTTCG Rfer_1870 2010630 - 2008720 - | signal transduction histidine kinase, nitrate/nitrite-specific, NarQ TERM 1853 2010734 - 2010679 - R 83 -9.6 -4.08394 | opp_overlap 2010718 AGACGCGCTCGAAAA CAGCTGCAATGCCCTGGCCACCAC CAATGCAC ATGGTGACCAGTGCGTAGCGGCCG CCGATGCGCTCCAGT Rfer_1871 2011846 - 2010659 - | beta-ketothiolase TERM 1854 2012374 - 2012389 + G 78 -6.8 -4.58395 | CGCAAATGCCTTGAA CTCGGT GCCG ACCGGG TTTTTGACAAGTCCA Rfer_1872 2012077 - 2012496 + | response regulator receiver domain-containing protein Rfer_1873 2013164 - 2012505 - | two component LuxR family transcriptional regulator Rfer_1874 2013194 - 2014075 + | histidine kinase TERM 1855 2014238 - 2014249 + F 74 -7.2 -4.07568 | TTCCAATTACCCTAA GCGG TTGG CCGC TTTTCAAACCAGGAG TERM 1856 2014392 - 2014405 + G 71 -8.1 -4.03321 | ATTGTGTTTGCGATC CTGGC TGTG GCCAG TTTCCTGTTTGGTCT Rfer_1875 2014272 - 2014436 + | hypothetical protein Rfer_1876 2014532 - 2014876 + | hypothetical protein Rfer_1877 2015002 - 2015385 + | hypothetical protein Rfer_1878 2015382 - 2015915 + | hypothetical protein Rfer_1879 2016108 - 2015950 - | hypothetical protein Rfer_1880 2016380 - 2016141 - | hypothetical protein TERM 1857 2016220 - 2016250 + g 77 -11 -3.57144 | GTTGCACCAGTGTCG CCGGTTGCGCCAGT GTT GCCGGTGCTACCGG TTTGGCCCTGCGGAC TERM 1858 2016747 - 2016763 + G 76 -8.7 -4.07535 | GCTATGCCAGAGTCT TGCCGTG GTT CATGGCA TTATTTCTGAGCGTT TERM 1859 2017410 - 2017422 + G 70 -3.3 -4.63218 | CCACCGTACCCGTTG GCCTG ACA CAGCC TTTTGTTGCAAAGGG Rfer_1881 2016716 - 2018296 + | Ig-like, group 2 TERM 1860 2018314 - 2018347 + F 87 -13.9 -3.28712 | opp_overlap 2018314 2018317, overlap 2018317 TTTTTGCAGCACAGA CAACGGGCGACAGAA TCAT TTCGGTCGACCGTTG TTGTCCAACCAAAGC TERM 1861 2018347 - 2018314 - f 81 -13.9 -2.94099 | opp_overlap 2018314 2018317, overlap 2018317 TTTTTGCAGCACAGA CAACGGGCGACAGAA TCAT TTCGGTCGACCGTTG TTGTCCAACCAAAGC TERM 1862 2018344 - 2018317 - f 74 -9.8 -3.61902 | opp_overlap 2018314 2018317, overlap 2018314 TTGCAGCACAGACAA CGGGCGACAGAA TCAT TTCGGTCGACCG TTGTTGTCCAACCAA TERM 1863 2018317 - 2018344 + F 76 -9.8 -3.78934 | opp_overlap 2018317 2018314, overlap 2018314 TTGCAGCACAGACAA CGGGCGACAGAA TCAT TTCGGTCGACCG TTGTTGTCCAACCAA TERM 1864 2019508 - 2019492 - g 78 -2.9 -5.0538 | opp_overlap 2019493, overlap 2019493 TGCCAGGGCAAAAAA GTCAGCA AAG CGCTGAT TGCCTGTTTGCAGCC Rfer_1882 2018400 - 2019563 + | OmpA/MotB TERM 1865 2019575 - 2019603 + T 77 -7.4 -4.36433 | TTAACGATGACTGTG GCGCGAGGAA ACAGCTCAA TACCTCGCGC TTTCTTGATCTTTAA TERM 1866 2019685 - 2019696 + T 71 -7.2 -4.00411 | GCGGTGGCGTCAGTT GCCG ACAG CGGC TTGTTTCGAGTTTTC Rfer_1883 2020288 - 2019779 - | BadM/Rrf2 family transcriptional regulator TERM 1867 2020162 - 2020172 + g 70 -4 -4.59773 | overlap 2020152 GATCGTTGACGACTT TCAT CAA ATGA TTTTTGGAGATCGCG TERM 1868 2021438 - 2021456 + G 85 -2.2 -5.42862 | overlap 2021439 2021441 2021443 2021452 TACGCGCTGGTCATG ACGGCGGC GCT GCTGCGGG TTTTTTTGCCGCTGT TERM 1869 2021520 - 2021530 + G 75 -2.4 -5.00138 | overlap 2021518 CCACCGCAATGCTGT GGAG TGC CGCC TTTTTGATTTACCTC Rfer_1884 2020394 - 2021599 + | NnrS Rfer_1885 2021630 - 2022013 + | invasion gene expression up-regulator, SirB TERM 1870 2022017 - 2022044 + F 88 -11.2 -4.15565 | overlap 2022010 GGTTTGCTGTGACGC CGCCGCGGCC CTGATTTC GGCCGCCGCG TTTTAGCCTGGTACA TERM 1871 2022135 - 2022172 + F 77 -11.1 -3.51411 | overlap 2022136 2022164 CCCCACTCACTCCCC CAACCCCTCTCCCGCCC CGCT GGGCGGAAGAGGGGAGC TTCATTTGGCCGCGT TERM 1872 2022136 - 2022171 + F 83 -14.6 -2.70525 | overlap 2022135 2022164 CCCACTCACTCCCCC AACCCCTCTCCCGCCC CGCT GGGCGGAAGAGGGGAG CTTCATTTGGCCGCG TERM 1873 2022278 - 2022291 + F 73 -5.9 -4.42464 | CCGGTTTGTGGCCAA CGTGC CATG GCGCG TTTATTTCCCACCTT Rfer_1886 2022567 - 2024891 + | putative nitric oxide reductase (subunit B) transmembrane protein Rfer_1887 2025898 - 2024915 - | diguanylate cyclase TERM 1874 2025007 - 2025030 + g 100 -18.2 -3.56594 | overlap 2025026 CCTGATCAGCCGCAT CCAGCAGCGC TTGT GCGCTGCTGG TTTGGCCAGCTTTCA Rfer_1888 2026520 - 2025912 - | CheC, inhibitor of MCP methylation Rfer_1889 2026987 - 2026526 - | response regulator receiver domain-containing protein TERM 1875 2026761 - 2026745 - G 73 -9.3 -3.95584 | opp_overlap 2026753 2026754, overlap 2026746 GGTGCAGTAATCAAA GGGCCGC GCC GCGGCCA GTGCCAGCGCTTCGT TERM 1876 2026760 - 2026746 - G 70 -12.8 -2.97029 | opp_overlap 2026753 2026754, overlap 2026745 GTGCAGTAATCAAAG GGCCGC GCC GCGGCC AGTGCCAGCGCTTCG Rfer_1890 2027805 - 2026993 - | enoyl-CoA hydratase TERM 1877 2027549 - 2027569 + g 74 -7.5 -4.35524 | CGGCGCAAGGCTTCT CGGGTGCGG CCA TCGCATTCG TTTTGAATTTGCGGG Rfer_1891 2030331 - 2027833 - | NADH:flavin oxidoreductase/NADH oxidase TERM 1878 2029152 - 2029138 - G 82 -12.8 -3.60296 | CAGCGTGACCTCAAA GCCGCG TTG CGCGGC GGTGATGGCAAAGGC TERM 1879 2030107 - 2030137 + g 79 -16.1 -2.71144 | gap 1 TTCTTCGGTCGTCAG GCGCGCACCGCCCG GCAT CGGGCGG-GCGCGG TCGTTGGGGGCAATG TERM 1880 2030924 - 2030905 - g 81 -5.6 -4.77036 | opp_overlap 2030917, overlap 2030906 CTGCACCAGGAAAAA CTGGCGCA CTAC CGCGCCAT CGAGCAGCGCGATTT Rfer_1892 2030530 - 2031060 + | PadR-like family transcriptional regulator TERM 1881 2031075 - 2031099 + F 84 -5.8 -5.03314 | opp_overlap 2031085, overlap 2031075 2031076 GACGTTGGTTTATAT GTGCATTGAA TGCAC TTCAATGCAG TTTTTTACGACTAAA TERM 1882 2031349 - 2031337 - f 70 -6.9 -4.19746 | opp_overlap 2031337 CGGATTTCAAAACAA CCCAG ACG CCGGG TTTGCCGCTGCTTTT TERM 1883 2032723 - 2032708 - g 70 -10.4 -3.51411 | overlap 2032704 AGCTCGTCAAACCAA GCGCAG TGAA CTGCGC GTTGCCGATGTGATG Rfer_1893 2032391 - 2032990 + | CBS Rfer_1894 2034222 - 2033035 - | major facilitator transporter TERM 1884 2033808 - 2033776 - G 80 -9.8 -4.10855 | overlap 2033766 2033803 AAAACGGCCGCAAAA GCCACCCATGACGG TGCCG CCCACATAGGTGGC GGTCATACGGGCGAC TERM 1885 2034181 - 2034160 - G 83 -2.2 -5.24449 | CAGAAAGGCAAAAAA GCCGATCA GCCAGA CGATGGGC CGGGACGCCTGTTGG Rfer_1895 2035176 - 2034268 - | pseudouridine synthase Rfer_1896 2035900 - 2035163 - | hypothetical protein Rfer_1897 2039293 - 2036027 - | diguanylate cyclase/phosphodiesterase Rfer_1898 2039540 - 2039346 - | hypothetical protein TERM 1886 2039674 - 2039636 - R 81 -11.7 -3.60792 | CGCTCAACTGGGAAA TCCCCGACTTGC-GCGCCG CGC CGGCGCTGCCAG-CGGGCA GGTCCGGCACGCGGC Rfer_1899 2040957 - 2039728 - | ROK Rfer_1900 2041406 - 2040954 - | RbsD or FucU transport TERM 1887 2041089 - 2041065 - G 77 -7.8 -4.37092 | opp_overlap 2041065 2041064, overlap 2041067 AGCGCGCTCATAAAA CGCAAAGCGC TCCAG GGGCTCTGCG CTTTGGCCGCTGCGC Rfer_1901 2042213 - 2041416 - | ABC transporter related Rfer_1902 2043172 - 2042213 - | inner-membrane translocator TERM 1888 2042410 - 2042429 + g 71 -5.6 -4.35524 | opp_overlap 2042389 2042390 2042387, overlap 2042425 TGCCGCCCAGCACCA CCGCGGTG ATTG CATCGAGG TTTTCGGTTTGCCCG TERM 1889 2043136 - 2043154 + g 76 -5.9 -4.59342 | overlap 2043130 2043138 TCCAGGGGCCAAGCG CTCCCCA GGGAA TGGGGCG TTTGTTTGTCGTGGA TERM 1890 2043276 - 2043307 + r 74 -2.9 -4.87273 | gap 1, overlap 2043279 2043280 ATGAGCGTCTGGATT GCCGCGTCGCTGCG CGCCT CGCAATGACG-GTC TTTTTATAAGCTGTT Rfer_1903 2044369 - 2043329 - | periplasmic binding protein/LacI transcriptional regulator TERM 1891 2044130 - 2044159 + g 75 -7.7 -4.1822 | GTCACCGTCCTTCTT GCCGGTGGCGGTC ATCA GCTTGGCACCGGC TTTCTTGGCCTCGGC Rfer_1904 2044467 - 2045477 + | PfkB Rfer_1905 2046429 - 2045500 - | glutamate--tRNA ligase Rfer_1906 2047499 - 2046444 - | FAD dependent oxidoreductase Rfer_1907 2048475 - 2047537 - | LysR family transcriptional regulator TERM 1892 2047845 - 2047884 + g 76 -12.9 -3.28924 | gap 1, overlap 2047844 2047855 CGAAGGTCAGGCCAC CACCGCG-GGTGATGGTG TCGGC CACCGCCACTGCGCGGTG TTGTCGCACCAGCTC Rfer_1908 2050298 - 2048481 - | PhoH-like protein TERM 1893 2049260 - 2049249 - G 81 -4.4 -4.8743 | TTCAAAATAAACAAA CTGA TTGA TCAG CAGGCTGGCAACAAT TERM 1894 2049672 - 2049660 - G 70 -4.8 -4.56597 | TTGGGTCTGGAAAAA CAGC TTGCC GCTG GCTTCGCGGTGGCCG TERM 1895 2049873 - 2049840 - G 78 -7.5 -4.60487 | gap 1 GATCATGGGCAAAAA GATGT-CGTGTTCCTC GAA GCGGAACAGGCACATC GGGTCGTGCAGCAGC TERM 1896 2050351 - 2050372 + r 84 -13.7 -3.14132 | opp_overlap 2050331 2050330 2050351 CTTTAAAAGCAAAAA GCCGCCTTG AGAA CAGGGCGGC TTGATACGGGGCCGG TERM 1897 2050372 - 2050351 - R 100 -11.5 -5.0925 | opp_overlap 2050351, overlap 2050331 2050330 CTTTAAAAGCAAAAA GCCGCCTTG AGAA CAGGGCGGC TTGATACGGGGCCGG Rfer_1909 2050931 - 2050413 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rfer_1910 2051431 - 2051057 - | hypothetical protein Rfer_1911 2051487 - 2052767 + | aminotransferase AlaT TERM 1898 2053008 - 2052992 - g 74 -10.9 -3.53012 | TGGCGCGGGCGCAAA GTCTGGT CGG ACCAGAC GTCAAGGTGGTCAAT Rfer_1912 2052838 - 2054196 + | homoserine dehydrogenase Rfer_1913 2054196 - 2055623 + | threonine synthase Rfer_1914 2055620 - 2056153 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 1899 2056214 - 2056226 + G 76 -9.1 -4.13945 | TCGATGACGCTTTGA GCCAG TTG CTGGC TTTTGCCGTGCCGCT TERM 1900 2057152 - 2057166 + G 77 -3.4 -4.90013 | overlap 2057151 2057150 TTTGTCACCTTCTTG CTGCTG GTG CGGCCG TTTTTGCTTGAATTG Rfer_1915 2056150 - 2057436 + | MoeA-likedomain-containing protein Rfer_1916 2057433 - 2057684 + | molybdopterin converting factor, subunit 1 TERM 1901 2057733 - 2057768 + F 78 -13.2 -2.55351 | overlap 2057732 CCCACTCACTCCCCC AACCCCTCTCTCGCCC CGCC GGGCGAAAGAGGGGAG CTTCATGTGGCCGCG Rfer_1917 2058052 - 2058543 + | molybdopterin biosynthesis MoaE Rfer_1918 2059106 - 2058540 - | hypothetical protein TERM 1902 2058720 - 2058734 + g 78 -2.8 -5.06414 | opp_overlap 2058708 AAAGCAGCGTGATCC CTGG CTGCCCT CCAG TTTTTCTTCAAACCC TERM 1903 2059600 - 2059582 - g 70 -4.5 -4.53705 | AATTGCCAGAGAAAA CGGCTTG ACCCG CAAGTCG CTGGAAGCGGCGATT TERM 1904 2059811 - 2059795 - g 72 -2.3 -4.7254 | ACGGCGCACCAAAAA CAATC CCGTCCT GATTG GCGAGCCCGGTGTCG TERM 1905 2060194 - 2060171 - g 73 -4.4 -4.60889 | overlap 2060161 2060174 AAGTACGTCGAAAAA GACGCCGCGC TGGA ACGCCGCTTC CAGAAAATCCTGGTC TERM 1906 2060608 - 2060594 - g 78 -7 -4.62471 | TGGAAGGCCGAAAAA GCCCAG GCC CAGGGC TCCAAAGCGATCATG Rfer_1919 2059202 - 2061814 + | ATPase AAA-2 TERM 1907 2061846 - 2061859 + T 100 -9.5 -5.60993 | opp_overlap 2061846 CCCAATGCGAAAAAA CCCGC CTTG GCGGG TTTTTTTATAAGCGC TERM 1908 2061859 - 2061846 - T 100 -9.5 -5.09426 | opp_overlap 2061846 CCCAATGCGAAAAAA CCCGC CTTG GCGGG TTTTTTTATAAGCGC Rfer_1920 2062437 - 2061886 - | hypothetical protein Rfer_1921 2064198 - 2062504 - | dihydroxy-acid dehydratase TERM 1909 2062966 - 2062981 + g 70 -4.6 -4.57073 | opp_overlap 2062954, overlap 2062967 2062977 AAAGACGCGTGCCGG GCCGGT CATG ACCGGG TTTTTCAGGCCGGTG TERM 1910 2063782 - 2063806 + g 81 -5.6 -4.82901 | CACATTGGCGCGCAG CATGCCCATC AGGCC GCCGGGCATG TTTTTGTCGCAACCG TERM 1911 2064256 - 2064272 + H 71 -4.5 -4.66163 | TATGCGCCGGGCTAT TATGTTG TTC CAATATA TTTTTAAGTGGCAAT TERM 1912 2064373 - 2064403 + G 80 -10.5 -4.07568 | gap 1, opp_overlap 2064360, overlap 2064360 2064374 AACTGCGGCTGTGGC GGCAGTTC-TCGGC CGTG GCCGAAGAACTGCA TTTTGGCCACGCGGC TERM 1913 2064374 - 2064402 + G 76 -14 -3.04398 | gap 1, opp_overlap 2064360, overlap 2064360 2064373 ACTGCGGCTGTGGCG GCAGTTC-TCGGC CGTG GCCGAAGAACTGC ATTTTGGCCACGCGG TERM 1914 2064797 - 2064829 + G 75 -8.4 -4.24342 | gap 1 CGGCTTTATGCTGCA TGCGCCGGGCTTTGC CCCA GTGG-GCCTGGCGCA TTTGTTGATCACGCA Rfer_1922 2064303 - 2065271 + | LysR family transcriptional regulator Rfer_1923 2065317 - 2066144 + | prolipoprotein diacylglyceryl transferase TERM 1915 2066193 - 2066175 - f 71 -6.1 -4.24123 | GGAATAAGCGCAAAA TGCTATT TATAT AATAGCA AATGTGTTGGCTGAG TERM 1916 2066352 - 2066370 + G 76 -5.9 -4.58283 | opp_overlap 2066321, overlap 2066354 ATGTCGCGTGCCATG TGGCGCG ACTTG CGCGCTG TTTTTGAGCGCATTC Rfer_1924 2066241 - 2067059 + | enoyl-CoA hydratase/isomerase TERM 1917 2067327 - 2067348 + G 83 -2.9 -5.20328 | overlap 2067328 GGCGCTGCTGCTGTA TCTGGCG ACCTTGCG CGCCGGG TTTGTTTTTTTGCCG TERM 1918 2068624 - 2068614 - g 85 -2.4 -5.43866 | overlap 2068615 CAAGGTGCAAAAAAA CGTG TTG CGCG AACAGTATTCAGCGT Rfer_1925 2067139 - 2068641 + | malonyl-CoA synthase Rfer_1926 2069076 - 2068633 - | hypothetical protein TERM 1919 2068701 - 2068749 + g 70 -3.9 -4.64992 | gap 2, overlap 2068741 CACTGCCCAGCAGCA TGCG-CTTGAT-GCCACGGCGGC CGTGT GATGCCATGACGATCAAGTCGCA TTTGTGTTTTTTGGC TERM 1920 2069012 - 2069025 + g 85 -2.3 -5.40474 | GCCGCCAGGTCAATC GCGCT GCTG ACCGC TTTTTTTGACAAGGT TERM 1921 2069619 - 2069597 - g 85 -9.1 -4.58395 | opp_overlap 2069604 GCGAGCGCCGAAAAA CCGAAGCGC GCAAG GCGCTTTGG CGCCTGCTGGTGGCC Rfer_1927 2069182 - 2071569 + | heavy metal translocating P-type ATPase Rfer_1928 2071728 - 2073191 + | two component LuxR family transcriptional regulator TERM 1922 2073543 - 2073522 - f 71 -4.3 -4.65747 | overlap 2073523 2073524 CAAGTGTCAAGAAAA CCCCGTTCG TGAT CGAATGGCG AGACGGGTTAAAGAT Rfer_1929 2073603 - 2073767 + | cytochrome oxidase maturation protein, cbb3-type TERM 1923 2074124 - 2074147 + G 73 -10.4 -3.5882 | gap 1, overlap 2074127 TCTTACTATGTGGTT CAG-CGAACCT GTC AGGTTCGTCTG TTTGCGGGTGGTCTG TERM 1924 2074301 - 2074312 + G 75 -2.2 -5.0133 | GTGGTCTGGGTTTCC TACG CGAT CGTG TTTTTTGGCACGGTC TERM 1925 2074337 - 2074366 + G 78 -2.1 -5.07107 | opp_overlap 2074340, overlap 2074338 2074340 ACGGTCGGCACCCGC AAAGTTCGTCATA TTTA TGTGGCGAACTGG TTTTTTGGCGCTTTC Rfer_1930 2073875 - 2075311 + | cytochrome c oxidase, cbb3-type, subunit I Rfer_1931 2075325 - 2075951 + | cytochrome c oxidase, cbb3-type, subunit II Rfer_1932 2075968 - 2076111 + | Cbb3-type cytochrome oxidase component Rfer_1933 2076141 - 2077058 + | cytochrome c oxidase, cbb3-type, subunit III Rfer_1934 2077101 - 2078567 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1926 2078643 - 2078671 + G 75 -2.4 -4.87052 | overlap 2078643 2078646 2078650 GTTTGGCTGGTCGTG GCTGGTC-CGGCTA TCG TGGTCGTGGCC-GC TTTTGTTACTTTGTA Rfer_1935 2078577 - 2078864 + | hypothetical protein TERM 1927 2079028 - 2079051 + G 100 -8.8 -5.63645 | opp_overlap 2079017 CCCATCGGGTTTTCC CGTCAGGGTG TTTA CACCATGGCG TTTTTTGTCTTTTGG Rfer_1936 2078899 - 2079189 + | hypothetical protein TERM 1928 2079210 - 2079221 + T 71 -5.8 -4.27584 | TTTTTCTCAGGCTGT TCCG GCAC CGGA TTTTGGATTGACAAT Rfer_1937 2079872 - 2079201 - | Crp/FNR family transcriptional regulator TERM 1929 2080428 - 2080440 + G 83 -4.8 -5.02074 | AATTGCATCTGGGTG GTGG CAGTC CCAC TTTTTTGACGGATGA TERM 1930 2080687 - 2080698 + G 76 -7.2 -4.43477 | CTTGGTGGCAGCCGC CCGC GAAC GCGG TTTTGATTCCATCAA TERM 1931 2080906 - 2080920 + G 84 -9.2 -4.43844 | GGTGGCCATGCTGGC GCGGTC CAT GGCCGC TTTTATGGGTGCTGG Rfer_1938 2080070 - 2081467 + | coproporphyrinogen III oxidase TERM 1932 2081848 - 2081885 + G 100 -9.7 -5.0538 | overlap 2081819 2081850 CTGGCTGCCGGGCGG GGCCGGGGTGCGCCACT GGTG ATTGGCGCTCTCTGGAC TTTTTTGCCCTGCGG TERM 1933 2082060 - 2082101 + G 78 -10.8 -3.92373 | gap 1 TGGCGATTGGGGTGT GCGCCTGGCCGGTCTGGCA TTGGC TGCCAGTTCGGTCTGG-GC TTTGTGGATGGCGTA Rfer_1939 2081476 - 2082153 + | hypothetical protein Rfer_1940 2083375 - 2082188 - | secretion protein HlyD TERM 1934 2082851 - 2082879 + g 82 -13.1 -3.6292 | opp_overlap 2082849, overlap 2082850 2082850 2082876 CTGTTCCAACTCATG GCGCGCGGCGG CCTCTTC TTGCCGCGCGC TTTCCAGCTCTTTCT Rfer_1941 2085755 - 2083392 - | hypothetical protein TERM 1935 2083956 - 2083937 - G 76 -15 -2.5474 | opp_overlap 2083928 2083937, overlap 2083936 2083934 GCTGATTGACAATAT CGCCCTCC CGAA GGAGGGCG TTCAATGCGTGTCTT TERM 1936 2083937 - 2083956 + g 80 -15 -3.09759 | opp_overlap 2083937 2083936 2083934, overlap 2083928 GCTGATTGACAATAT CGCCCTCC CGAA GGAGGGCG TTCAATGCGTGTCTT TERM 1937 2084734 - 2084719 - G 100 -9 -5.09426 | GGGAATCTGAAAAAA TCGGCA TAAA TGCCGA CGAACCAGTGCCCCA TERM 1938 2084962 - 2084939 - G 100 -8.9 -4.84359 | overlap 2084951 CCACGGCCAGAAAAA TGCTCGGCA ATACCG TGCCAAGCA CGCGCTGCTCCTGGA Rfer_1942 2086530 - 2085766 - | ABC transporter related TERM 1939 2086075 - 2086104 + g 73 -10.6 -3.61517 | overlap 2086086 2086087 CGGGAAGTGATCCAG GCGCTCGGCCAG CCCGAC CAGGCCGAGGGC TTCTTCGGCCGGCAT TERM 1940 2087221 - 2087203 - g 78 -2.2 -5.09259 | overlap 2087205 GAGTCCAAAAGAAAA CCGTGACG TGC CGCCCCTG CGCTATGAGCTGGCC TERM 1941 2087221 - 2087253 + G 71 -7 -4.20084 | gap 1, opp_overlap 2087250, overlap 2087222 TGACGTGCCGCCCCT GCGC-TATGAGCTGG CCTA CCAGCTCAAACGCGA TTTTCCCTCGCTCGT Rfer_1943 2086646 - 2087641 + | tRNA-dihydrouridine synthase A TERM 1942 2088189 - 2088206 + T 84 -2.7 -5.37593 | CGCAAGCTTTTTGGT CTTGC TCTGACCC GCAAG TTTTTTGGTTTCGGC Rfer_1945 2089191 - 2088235 - | twin-arginine translocation pathway signal TERM 1943 2088809 - 2088820 + g 85 -7.2 -4.86731 | ATGCCCAACACCACG CGCC GGTT GGCG TTTTCTTTGAAGACG TERM 1944 2089729 - 2089739 + G 72 -2.4 -4.74801 | AGCGCTGGCGGGCTT GGGC AAT GCCA TTTTTCATCCGGTTG Rfer_1946 2089331 - 2090593 + | major facilitator transporter Rfer_1947 2090709 - 2091026 + | hypothetical protein Rfer_1948 2091229 - 2092485 + | molecular chaperone, Hsp70 class TERM 1945 2092573 - 2092600 + T 74 -11.4 -3.28791 | opp_overlap 2092579, overlap 2092579 GCCTGATTTGACATA AAAAAAGCCGGT GTGA ACCGGCTTTTTG TTGTCAGCGCAAGAT TERM 1946 2092594 - 2092579 - T 100 -10.4 -5.71712 | opp_overlap 2092573 2092579 TTTGACATAAAAAAA GCCGGT GTGA ACCGGC TTTTTGTTGTCAGCG TERM 1947 2092579 - 2092594 + T 100 -10.4 -5.18726 | opp_overlap 2092579, overlap 2092573 TTTGACATAAAAAAA GCCGGT GTGA ACCGGC TTTTTGTTGTCAGCG Rfer_1949 2094251 - 2092623 - | extracellular solute-binding protein TERM 1948 2093287 - 2093328 + g 77 -3.8 -4.99056 | gap 2, overlap 2093287 GCCTTTTTGTCGATC GCCATATTGATGGCTTTGCG CACG CGCAC-GTCATCAA-ACGGC TTTTTGGTTGTGTTG dppF 2095275 - 2094271 - | dipeptide transporter ATP-binding subunit TERM 1949 2095187 - 2095217 + g 71 -5.3 -4.38712 | overlap 2095190 2095191 CTCACCGCCTGCAGT TGATCCGCGGCGT GCAGA AAGCCGCGGCTGA TTTTGTAGACCTGGC Rfer_1951 2096240 - 2095272 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 1950 2096187 - 2096217 + g 77 -7.6 -4.35926 | overlap 2096176 2096174 2096188 GACCGCGTGCATCAC GCTGTTGGTCGA AGGGAAA TCGACCGACAGA TTTTCAATTTCAAGT Rfer_1952 2097172 - 2096264 - | binding-protein-dependent transport systems inner membrane component TERM 1951 2097062 - 2097076 + g 71 -7 -4.2704 | opp_overlap 2097058 CACCACAATCACCAG GCCGCC GAC GGCGCC TTTGTTGCTGCTGAA Rfer_1953 2098185 - 2097181 - | binding-protein-dependent transport systems inner membrane component TERM 1952 2097881 - 2097867 - G 100 -11.4 -5.48303 | opp_overlap 2097866, overlap 2097857 ACAAGGCGAAAAAAA TCGCGC ATA GCGCGA GTTCAATGGTGGCGG TERM 1953 2098261 - 2098232 - R 88 -13.7 -3.34043 | opp_overlap 2098238 2098239, overlap 2098239 TGGATCATGCCAGAA CAAAAAAGCCGAC TCGC GTCGGCCTTTTCG CTAGGCAGCGAACGC TERM 1954 2098238 - 2098255 + r 70 -6.9 -4.18018 | opp_overlap 2098232 2098239, overlap 2098239 ATGCCAGAACAAAAA AGCCGAC TCGC GTCGGCC TTTTCGCTAGGCAGC TERM 1955 2098254 - 2098239 - R 100 -10.4 -5.55769 | opp_overlap 2098239 2098238, overlap 2098232 TGCCAGAACAAAAAA GCCGAC TCGC GTCGGC CTTTTCGCTAGGCAG TERM 1956 2098266 - 2098279 + r 74 -8.1 -3.95036 | overlap 2098263 CGGCCTTTTCGCTAG GCAGC GAAC GCTGC TTATTTCAGGTGCTT Rfer_1954 2098714 - 2098280 - | SWIB/MDM2 TERM 1957 2098671 - 2098681 + g 85 -2.4 -5.42259 | GGCGCTACTTTTTTA GCGG GTG CAGC TTTTTTTGCCGGTGC TERM 1958 2098828 - 2098839 + H 76 -3 -5.01676 | GGGAAGCCTTTATTT CATT GGTA AATG TTGTTTTTTTTGGTT TERM 1959 2098993 - 2099009 + G 71 -8 -4.07885 | CGGTGTTTCGTGACT TTGGCG GCGTG CGCCAA TTTTGCGGACCGGTG Rfer_1955 2098899 - 2099420 + | ribonuclease activity regulator protein RraA Rfer_1956 2100382 - 2099426 - | hypothetical protein TERM 1960 2100561 - 2100550 - H 85 -2.2 -5.55698 | TATAATTCAAAAAAA GCAC GACC GTAC TATTTTGTGCCGGAT TERM 1961 2100641 - 2100665 + H 77 -8.5 -4.14739 | opp_overlap 2100628 2100627, overlap 2100642 ATGTCCGAGTTGACG TGCACGTCAAC TCG GGTGACGTGCC TTTTCAAGTCAATCG TERM 1962 2100642 - 2100664 + H 76 -12 -3.08522 | opp_overlap 2100628 2100627, overlap 2100641 TGTCCGAGTTGACGT GCACGTCAAC TCG GGTGACGTGC CTTTTCAAGTCAATC Rfer_1957 2100711 - 2101460 + | electron transfer flavoprotein beta-subunit Rfer_1958 2101490 - 2102422 + | electron transfer flavoprotein, alpha subunit TERM 1963 2102437 - 2102456 + F 100 -11.4 -5.75342 | opp_overlap 2102435 2102437 AGCCAGGCACAAACA GGGCATCG TTCG CGGTGCCC TTTTTTTTCGCGCCC Rfer_1959 2102524 - 2104314 + | acyl-CoA dehydrogenase-like TERM 1964 2104342 - 2104378 + F 100 -10.8 -4.87665 | opp_overlap 2104342 CTGCTACATATCTAA TAGCCGCTCGCGCCTG CTGGA CAAGGGCTAGCGGCTA TTTTTATCAATAGAA TERM 1965 2104378 - 2104342 - f 84 -13.7 -3.15999 | opp_overlap 2104342 CTGCTACATATCTAA TAGCCGCTCGCGCCTGC TGG ACAAGGGCTAGCGGCTA TTTTTATCAATAGAA TERM 1966 2105296 - 2105310 + G 71 -5.6 -4.37092 | opp_overlap 2105293 CGCTGTCACCAAGGT TCAGCG TAC CGCCGA TTTTGTGGCCCAGCT Rfer_1960 2104415 - 2105380 + | 2-nitropropane dioxygenase, NPD Rfer_1961 2106395 - 2105436 - | rhodanese-like protein TERM 1967 2105732 - 2105716 - G 73 -4.3 -4.68724 | opp_overlap 2105721, overlap 2105718 2105719 TCATCGAACACAAAA CACTGGC CCT GCCAAAG GCTTTGCTCAGGGGG Rfer_1962 2106874 - 2106392 - | glutathione-dependent formaldehyde-activating, GFA Rfer_1963 2107739 - 2107038 - | hypothetical protein TERM 1968 2107161 - 2107130 - G 93 -16.5 -3.51032 | AGGCGCCAACCAGAA CACCGGCGCCGCC AACCCG GGCGGCGACGGCG CCCAACAAGGCCAGG TERM 1969 2107893 - 2107934 + r 82 -5.1 -5.07652 | gap 1, overlap 2107897 GCCGCGGCGAAGCCG CTGTGGCTGGCAGGCCGG CATCTAT CTGGCTTGC-AGTCTCGG TTTTCTTTTCACGGC Rfer_1964 2110046 - 2107914 - | putative dehydrogenase TERM 1970 2107969 - 2107997 + g 71 -7.9 -4.13014 | overlap 2107968 ACCGGTTTTGTCCGC GCTGGGGCCACCG GTT TGACGGCCCCCGC TTTTCGGGCTGTCCG TERM 1971 2109798 - 2109824 + g 100 -14.4 -4.70659 | opp_overlap 2109803 CACCGGGATGCGCTT GACAACGCCTGC CAT GCGGGCGCTGTC TTTTTCAATGTAGCG TERM 1972 2110095 - 2110118 + H 83 -15.4 -2.6187 | overlap 2110085 2110092 2110091 GCTGGCCACGGATTC GCGGGTTGAT CATG ATCAACCCGC TACCTTCTACCTTGT Rfer_1965 2110235 - 2111494 + | iron-containing alcohol dehydrogenase TERM 1973 2111945 - 2111925 - g 85 -9 -4.62069 | gap 1 TCGGGAGGCCAAAAA CGCCTTGGC CGAA GCCA-GGCG CGGTGCCCTCAACAG Rfer_1966 2111626 - 2112126 + | hypothetical protein Rfer_1967 2113552 - 2112188 - | beta-lactamase-like TERM 1974 2113634 - 2113604 - R 86 -7 -4.99035 | gap 1, opp_overlap 2113604 CTATGCACAGAAAAA TGCCACG-AAGAC AGTTAA ATCTTTCGTGGCA TTTCTGGTGCGTCAA Rfer_1968 2114814 - 2113675 - | chaperone DnaJ TERM 1975 2114137 - 2114159 + g 74 -3.4 -4.72556 | overlap 2114131 2114138 GCCACCGTCGATACC GGCTGGAA TCTTGAC TTCCAGCG TTTTCTGCTTTTTGA TERM 1976 2114294 - 2114266 - G 78 -6.6 -4.59773 | opp_overlap 2114268, overlap 2114268 CTGCACGCTGAAAAA GCCCTGGCGC ATTTGCACG GCGCCCGAGC CGCTGCAGGTGCCGC TERM 1977 2114541 - 2114520 - G 70 -4.5 -4.57837 | gap 1, overlap 2114522 2114530 ACATGTCGCCAAAAA TATCGCCAAA GGC TTCGGCGA-A CCCGCCATAACCTTC TERM 1978 2114540 - 2114522 - G 73 -9.6 -3.90316 | overlap 2114520 2114530 ATGTCGCCAAAAATA TCGCCAAA GGC TTCGGCGA ACCCGCCATAACCTT TERM 1979 2114720 - 2114746 + g 83 -4.5 -5.09521 | gap 1, overlap 2114693 2114716 2114713 2114721 TTGCGGTCCGGGTGA TGCTTCATCGCA TGTT TGCGAT-AAGCC TTTTTGATTTCTTCG TERM 1980 2114872 - 2114843 - R 100 -18.7 -3.75153 | opp_overlap 2114831 2114841 2114840 2114839 TGGTTTCAACGCAAA CGCCGCGTTGAAC AATT ATTCAACGCGGCG CCCCTTTTCAGTGTT Rfer_1969 2116867 - 2114912 - | molecular chaperone DnaK TERM 1981 2115158 - 2115173 + g 70 -4.7 -4.48987 | TTCTTCCAGGTGCTT GATCG CTTCTT CGATC TTTTCCTTCTCGCCG TERM 1982 2116304 - 2116291 - G 78 -5.2 -4.75174 | opp_overlap 2116293 CACCCAAGTCAAAAA CCGC GATTTT GCGG TCGCCTTTTTCAGTC TERM 1983 2116388 - 2116402 + g 76 -10 -3.74693 | GACATCGAGTCCGGC GATGCG ACC CGCATC TTTGGTGGCCTGACG Rfer_1970 2117516 - 2116953 - | GrpE protein Rfer_1971 2118032 - 2117679 - | peptidylprolyl isomerase, FKBP-type TERM 1984 2118119 - 2118108 - R 85 -4.4 -5.14163 | AGCCATTAATAAAAA GTCT CAGC AGAC CGGGGTGTTCAAATG Rfer_1972 2118439 - 2118128 - | putative transcriptional regulator Rfer_1973 2118716 - 2119003 + | putative orphan protein TERM 1985 2119771 - 2119746 - g 70 -3.9 -4.66953 | overlap 2119747 GGAACAGTCCAAAAA CCTGTTCGAGC AAAT GCAGGAACAGA TGCAAAAACAGACCG Rfer_1974 2119288 - 2119821 + | polyhydroxyalkanoate synthesis repressor PhaR TERM 1986 2120771 - 2120755 - g 72 -2.2 -4.83615 | overlap 2120756 CAGCGGCGAGAAAAA TCTGGA GCGCA TCCAGC GCTGGCGTGAGGTCT TERM 1987 2120929 - 2120951 + G 72 -12.8 -3.0644 | overlap 2120946 CCCGGTGCAGGGTGC TGTCGCCAAT GAC ATTGGCGGCA TGTTGCCGATTGAAT Rfer_1975 2119856 - 2121250 + | hypothetical protein TERM 1988 2121324 - 2121350 + F 83 -8.1 -4.43309 | opp_overlap 2121324 CTGGCCAAAAAAAAA CCAGAAATCTT GCTAG AAGATCTCTGG TTTTCATTAACATTG TERM 1989 2121350 - 2121324 - f 100 -10.3 -6.06723 | opp_overlap 2121324 CTGGCCAAAAAAAAA CCAGAAATCTT GCTAG AAGATCTCTGG TTTTCATTAACATTG TERM 1990 2122643 - 2122622 - g 70 -5.1 -4.4715 | overlap 2122604 2122625 GGCGAATCGAGAAAA TCATTCCGC GCAC GCGCAACGA TGCGCACAAAATTGT TERM 1991 2122684 - 2122698 + G 84 -10 -4.15044 | ATGCTGGCGGCCAAC GTCTGC AGT GCAGAC TTTATTGCCCAGAGC TERM 1992 2123216 - 2123164 - g 80 -3.4 -5.11033 | gap 2, overlap 2123155 2123168 2123177 CAGAAGCCCAAAAAA TTGAGTGCCGAAACGCAGGCCTGGCA AGC TGCG-GGCATGCATTGCAGCGC-CAA TGAACGTCGCGCCGA TERM 1993 2123674 - 2123660 - g 76 -5.6 -4.72272 | overlap 2123662 GCCGCGCACGAAAAA CTTCGG AAC CCGATG TGCGCGCGCCAAAAT Rfer_1976 2121499 - 2123739 + | ribonuclease R Rfer_1977 2123776 - 2124531 + | short-chain dehydrogenase/reductase SDR Rfer_1978 2126252 - 2124591 - | PAS/PAC sensor signal transduction histidine kinase TERM 1994 2124771 - 2124761 - G 70 -3.2 -4.60255 | opp_overlap 2124768, overlap 2124762 AGAACGGTTCAAAAA TCCG GGA CAGA TGCTCCGGCTGGATG Rfer_1979 2127544 - 2126249 - | metal dependent phosphohydrolase TERM 1995 2127605 - 2127591 - R 78 -7 -4.56775 | overlap 2127577 2127572 2127592 AGCCGCGGGTAAAAA CCCGGC GCT GGCGGG CCGGTCCAAAAATCT Rfer_1980 2129013 - 2127664 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 1996 2128390 - 2128445 + g 75 -8.3 -4.20084 | gap 1, opp_overlap 2128389, overlap 2128376 GTGCCCGGCCAAATT GCCGCCGCG-CATTTCCATCAGGGTG GAAAA CACCTTGATCGAAGTGACGAAGCTGC TTTTCAGTCGCTCAT Rfer_1981 2130031 - 2129189 - | metal dependent phosphohydrolase TERM 1997 2129255 - 2129245 - G 76 -6.8 -4.57569 | opp_overlap 2129244, overlap 2129203 CGACGCTCGCAAAAA CCTG CAG CAGG GTCGCTTCATCCAGA Rfer_1982 2134211 - 2130144 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1998 2130932 - 2130951 + g 76 -9.2 -4.07568 | GCTCGTCGTCCACCA GCAGCAGC GTGC GCTGCGGC TTTTGCAGGCGCAGC TERM 1999 2133206 - 2133227 + g 73 -10.2 -3.57263 | GGCGGTCGAGCTGCG CATGGCCT TCAGGC AGGCCATG TTTGCCCATCACGCT TERM 2000 2133356 - 2133331 - G 76 -8.9 -4.07885 | overlap 2133332 TAGTGCCTGTCAAAA GCGCTGGTGCA GTAC TGCGCCAGCGT GCTGCGCGACCAGTT TERM 2001 2133355 - 2133332 - G 72 -12.4 -3.04517 | overlap 2133331 AGTGCCTGTCAAAAG CGCTGGTGCA GTAC TGCGCCAGCG TGCTGCGCGACCAGT TERM 2002 2134519 - 2134493 - R 74 -7.3 -4.07885 | overlap 2134494 CAGGTTGGTTCAAAA TTGACCTGCAC TCTTG ATGCAGGTCAG CGCCACTGCTTATTT TERM 2003 2134645 - 2134601 - R 81 -12.8 -3.08464 | gap 1 TTAGTAGCTATTGAA GGGTTGCCATGAGCGAC-GGG TGGT CCGTGCCGCCCGCGGCAACCC AGGCTGCATCGCGCT Rfer_1983 2138654 - 2134593 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 2004 2135273 - 2135285 + g 76 -6.2 -4.62302 | opp_overlap 2135267 2135265 GCAAAAACAGGGCCG GGGC AAGCA GCCC TTTTTCGGGATGTTG TERM 2005 2135824 - 2135776 - G 79 -14.7 -2.83715 | opp_overlap 2135774 GTCATGAGCAGCAGA TCGCCGGCTTCATGGCCAT GGCGGTCGTTG ATGGCCTTGAAGCCGTCGA GGTCGAGGTAGGCCA TERM 2006 2135853 - 2135879 + g 78 -13.6 -3.14344 | overlap 2135851 CAGCGCCAGCATCTG GCCACGGCGCTG CGC CTGCGCCATGGC TTGCTGCAAGCGGTC TERM 2007 2136681 - 2136694 + g 85 -2.3 -5.40072 | overlap 2136667 GGTGCGAAAACGTTC TTCGC TGTC GCGCA TTTTTTTGGCCGCGG TERM 2008 2138173 - 2138187 + g 72 -11.4 -3.35679 | GCCATGGTGATCAGT GGCGCT GGC AGCGCC TTGTCCATCACCGGC Rfer_1984 2140289 - 2138826 - | hypothetical protein TERM 2009 2139512 - 2139464 - G 100 -9.4 -4.87786 | overlap 2139465 GCAAGCCGACAAAAA CCCGCCCGGC-GCCCGCGTGCAGC GCG GCCG-ACGCTGCCAGCAGGGCGGC ACCGGTCATGCCGGG TERM 2010 2139511 - 2139465 - G 79 -12.9 -3.51948 | overlap 2139464 CAAGCCGACAAAAAC CCGCCCGGC-GCCCGCGTGCAGC GCG GCCG-ACGCTGCCAGCAGGGCGG CACCGGTCATGCCGG Rfer_1985 2141182 - 2140295 - | beta-lactamase-like TERM 2011 2140566 - 2140585 + g 81 -5.6 -4.7497 | TCGACGCCGTGCATG GCGCGCAG GATG CTGTGGGC TTTTTCATCAATGAA TERM 2012 2141057 - 2141044 - G 70 -3.7 -4.64766 | overlap 2141045 GCGACAGCGGAAAAA TGCCG GTGC CGGCG TCCAGGATGATCAGC Rfer_1986 2142034 - 2141192 - | metal dependent phosphohydrolase TERM 2013 2141743 - 2141724 - G 84 -11.4 -4.07568 | gap 1, opp_overlap 2141709 2141735 2141736 TGCGCGCCGTCAAAA CCGGCC-GC ATT GCTGGCCGG CAGCATGCCGATGGC TERM 2014 2141735 - 2141777 + g 85 -6.9 -4.8083 | gap 1, opp_overlap 2141724, overlap 2141736 AAAACCGGCCGCATT GCTGGCCGGCAGCAT-GCCG ATGG CGGCGATGCTCAAGGCCAGG TTTTTGATGGTGTTA TERM 2015 2141736 - 2141776 + g 70 -10.4 -3.47413 | gap 1, opp_overlap 2141724, overlap 2141735 AAACCGGCCGCATTG CTGGCCGGCAGCAT-GCCG ATGG CGGCGATGCTCAAGGCCAG GTTTTTGATGGTGTT Rfer_1987 2143323 - 2142097 - | D-amino-acid dehydrogenase TERM 2016 2142667 - 2142609 - G 76 -14.3 -2.62184 | opp_overlap 2142612 2142625 2142635 2142638, overlap 2142611 TCCCCGCGCAGATCA CAGCGGCGTCAAAGGGGCGGGCGCCGG TTTCG CCGGCGACCGTGAGCGTGACGCCGCCG GCGCTGCTGATGTGT TERM 2017 2142665 - 2142611 - G 75 -13.3 -2.85351 | opp_overlap 2142612 2142625 2142635 2142638, overlap 2142609 CCCGCGCAGATCACA GCGGCGTCAAAGGGGCGGGCGCCGG TTTCG CCGGCGACCGTGAGCGTGACGCCGC CGGCGCTGCTGATGT Rfer_1988 2144846 - 2143437 - | amidase TERM 2018 2145492 - 2145467 - g 74 -3.1 -4.74103 | overlap 2145447 2145468 TGCCGAAGCCAAAAA GCTCGGCATTC CCCT GATTGCCGTGG TCGACACCAATCACT Rfer_1989 2144940 - 2145692 + | ribosomal protein S2 TERM 2019 2145732 - 2145716 - f 100 -5 -5.75342 | opp_overlap 2145717, overlap 2145717 CTGCCCTAAAAAAAA GGGGGC TTCTG GGCCCC TTTTTTGAGTCCCCA TERM 2020 2145732 - 2145717 - f 71 -7.5 -4.04482 | opp_overlap 2145717, overlap 2145716 TGCCCTAAAAAAAAG GGGGC TTCTGG GCCCC TTTTTTGAGTCCCCA TERM 2021 2145717 - 2145732 + F 95 -8.2 -5.08824 | opp_overlap 2145716 2145717 TGCCCTAAAAAAAAG GGGGCT TCTG GGCCCC TTTTTTGAGTCCCCA TERM 2022 2146520 - 2146506 - g 78 -5 -4.82901 | GGCGGCGTACAAAAA TACCTC AAG GAAGTA TCGCTGTTTAACCAG Rfer_1990 2145780 - 2146703 + | translation elongation factor Ts pyrH 2146813 - 2147535 + | uridylate kinase Rfer_1992 2147596 - 2148156 + | ribosome recycling factor TERM 2023 2148916 - 2148951 + G 86 -14.8 -3.38118 | overlap 2148917 AAGGTGGCTGGTTGC TGCTGATTGCCGCCAT TTTC ATGGCGGCGATGAGCG TTGTGGGTGACTTGT TERM 2024 2148917 - 2148950 + G 78 -16.1 -2.62389 | overlap 2148916 AGGTGGCTGGTTGCT GCTGATTGCCGCCAT TTTC ATGGCGGCGATGAGC GTTGTGGGTGACTTG Rfer_1993 2148255 - 2149100 + | phosphatidate cytidylyltransferase Rfer_1994 2149109 - 2150323 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2025 2150510 - 2150520 + G 71 -8.2 -4.13767 | TCATCGACCGAATTT GCGC TGT GCGC TTTTCCGCTGGGCGG TERM 2026 2151629 - 2151649 + G 93 -11.1 -4.3767 | ATGGAGACTTTGCAG CGGGGTGGC GTT GCCATCCTG TTTCTTCTGATGTCG Rfer_1995 2150342 - 2151703 + | peptidase M50, putative membrane-associated zinc metallopeptidase Rfer_1996 2151696 - 2154035 + | surface antigen (D15) Rfer_1997 2154035 - 2154559 + | outer membrane chaperone Skp (OmpH) TERM 2027 2154891 - 2154860 - g 73 -4.3 -4.59853 | overlap 2154849 2154863 GCAACTCTGGAAAAA GAGTCTGCCGCGG ACGGTA CGGCCGCAGATTC ACCCGAGCGCTGTGA Rfer_1998 2154582 - 2155571 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Rfer_1999 2155663 - 2156115 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Rfer_2000 2156126 - 2156920 + | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase TERM 2028 2157227 - 2157203 - g 95 -12.1 -4.27316 | opp_overlap 2157201 2157199 2157203 2157204, overlap 2157204 GCCGCCAACTCAAAA CCCGGCTGCTG CGG CAGCAGCCCGA TGTCTTCATTGGTGT TERM 2029 2157226 - 2157204 - g 78 -13.4 -3.16068 | opp_overlap 2157203 2157201 2157199 2157204, overlap 2157203 CCGCCAACTCAAAAC CCGGCTGCTG CGG CAGCAGCCCG ATGTCTTCATTGGTG TERM 2030 2157204 - 2157226 + G 72 -13.4 -2.51413 | opp_overlap 2157204 2157203, overlap 2157203 2157201 2157199 CCGCCAACTCAAAAC CCGGCTGCTG CGG CAGCAGCCCG ATGTCTTCATTGGTG Rfer_2001 2156944 - 2158113 + | lipid-A-disaccharide synthase Rfer_2002 2158121 - 2158744 + | ribonuclease H TERM 2031 2158902 - 2158912 + G 83 -4.6 -5.03715 | CCGTCATGTGACGCC CGCC ATC GGTG TTTTTTCAGAGTCAT TERM 2032 2159026 - 2159037 + G 74 -7.2 -4.42594 | GGCCTTGAGTCACCC GCCC AGAT GGGC TTTGTCTTTGATTTG Rfer_2003 2158741 - 2159535 + | tRNA/rRNA methyltransferase (SpoU) TERM 2033 2160188 - 2160152 - g 72 -10.9 -3.35996 | gap 2 GAGCCTGATCGACAA GGCCATTGCGCTGGCGC AGGCG GCGCCTGC-CA-TGGCC GGACTGGATCTGGCC TERM 2034 2160729 - 2160779 + G 91 -8 -4.86731 | opp_overlap 2160730, overlap 2160730 2160770 CGTGCCACCCATATC AGCCTGTTCGACGGCACGCTGCAG GGG CTGGAGCGCACCGACAAACCGGCG TTTTGTTTCCAAGGC TERM 2035 2160730 - 2160778 + G 74 -11.5 -3.51557 | opp_overlap 2160730, overlap 2160729 2160770 GTGCCACCCATATCA GCCTGTTCGACGGCACGCTGCAG GGG CTGGAGCGCACCGACAAACCGGC GTTTTGTTTCCAAGG TERM 2036 2160778 - 2160730 - g 85 -18.1 -2.64616 | opp_overlap 2160729 2160730 2160770 GTGCCACCCATATCA GCCTGTTCGACGGCACGCTGCAG GGG CTGGAGCGCACCGACAAACCGGC GTTTTGTTTCCAAGG Rfer_2004 2159694 - 2160875 + | carbamoyl phosphate synthase small subunit TERM 2037 2161105 - 2161129 + G 84 -10.7 -4.19704 | opp_overlap 2161111, overlap 2161109 CGTGTTCATGGTGGT CAAGTACGCCG GTG CGGCGTATCTG TTTTGGGTCGGGTTG TERM 2038 2161109 - 2161125 + G 79 -12.3 -3.42605 | opp_overlap 2161111, overlap 2161105 TTCATGGTGGTCAAG TACGCCG GTG CGGCGTA TCTGTTTTGGGTCGG TERM 2039 2161398 - 2161424 + G 89 -10.1 -4.59773 | CCATTTTGATGAGCT TCAGTGCCGCC TACCT GACGGCGCTGA TTTTTGCGGGTGCCC TERM 2040 2161488 - 2161503 + G 73 -4.6 -4.64952 | overlap 2161476 2161484 TCTCAAGCGGGCTCT CCAGCC TGGT GGGTGG TTTGTTTGTCTGGTT Rfer_2005 2160872 - 2161552 + | leucine export protein LeuE TERM 2041 2164579 - 2164557 - g 70 -4.2 -4.57073 | CATCTCGGTCAAAAA CAACGACA AACCCCG TGTCATTG AGGTCGCGCGTGATC Rfer_2006 2161639 - 2164935 + | carbamoyl-phosphate synthase, large subunit TERM 2042 2165058 - 2165081 + G 100 -13.8 -5.38839 | AACTCTTAGTCCATG CCGCCGAACG GTAA CGCTCGGCGG TTTTATTTTTATATC Rfer_2007 2165055 - 2165597 + | GreA/GreB family elongation factor Rfer_2008 2165602 - 2166012 + | hypothetical protein Rfer_2009 2166540 - 2166067 - | hypothetical protein TERM 2043 2166813 - 2166801 - g 84 -10.5 -4.20106 | overlap 2166802 AAATGTCACCCAAAA CCGCC ACC GGCGG CGGCGCGGCGGTCGG Rfer_2010 2166569 - 2167243 + | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 2044 2167835 - 2167823 - g 75 -7.7 -4.25104 | opp_overlap 2167833 TCTGCTTGACGAAAA CACCA ACT TGGTG ACCTTCGCTGATGTT TERM 2045 2168037 - 2168047 + G 70 -3.2 -4.6759 | CCGTTCTTTTCGATT TCGG GTT CTGA TTTTGTTGAAATGTT TERM 2046 2168127 - 2168117 - g 85 -5.4 -5.10208 | opp_overlap 2168117 GAACGCCAAGAAAAA TGCA CCT TGCA TTATCTTTATCGACG Rfer_2011 2167362 - 2169281 + | ATP-dependent metalloprotease FtsH TERM 2047 2169319 - 2169303 - f 100 -10.8 -5.53991 | opp_overlap 2169303 TATTTATCAAAAAAA CGGGGC GACAA GCCCCG TTTCTGTTTTCAAAT TERM 2048 2169303 - 2169319 + F 93 -10.8 -4.45771 | opp_overlap 2169303 TATTTATCAAAAAAA CGGGGC GACAA GCCCCG TTTCTGTTTTCAAAT TERM 2049 2170086 - 2170140 + G 73 -9.9 -3.63515 | gap 1 AGCCACCCCGCTGGC CGCCGCGGCGACACTGGATGTTCATG AGCG CCTGG-TGCCCAGTGTGGCCGCTGCG TTGTTGGCCGTGGAG Rfer_2012 2169355 - 2170233 + | dihydropteroate synthase Rfer_2013 2170275 - 2171606 + | phosphoglucosamine mutase TERM 2050 2172075 - 2172100 + G 76 -7.5 -4.57569 | opp_overlap 2172074 2172075 TTGCCAACTACCAAC TTGACCCGGCC ATGG GGCAGGCTCAA TTTTTGCAGAAGTGG Rfer_2014 2171603 - 2172124 + | GCN5-related N-acetyltransferase TERM 2051 2172328 - 2172338 + G 83 -2.4 -5.1861 | CCTGCCCTCATGTCG CTGG CTG CCCG TTTTTTGATCGTCGA TERM 2052 2172432 - 2172456 + G 72 -12.9 -3.04931 | overlap 2172427 GATCTTTATCTGGGC GCTGGTGGTGA CTG TCACCATCGGC TGTGTCATTGTCTGG Rfer_2015 2172208 - 2172540 + | hypothetical protein Rfer_2016 2175166 - 2172542 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2053 2173872 - 2173884 + g 80 -3.3 -5.04597 | overlap 2173873 AGTGAATCAAAATGT GCCAG CAA CTGGA TTTTTCTCTCTGCCT TERM 2054 2175142 - 2175112 - G 73 -9 -3.93868 | gap 1, overlap 2175110 CGCTGAAAACAAAGA CGCTCGTCGCCAA AATCCA TTGGCG-CGTGCG GTGCTGGCGGGCTGC TERM 2055 2176723 - 2176701 - g 78 -4.7 -4.74103 | overlap 2176702 CCGTGAAGGCAAAAA GCTGGTGCG TTACG CGCACCTGT CGACCGGCAACTACA TERM 2056 2177258 - 2177210 - g 76 -13.2 -3.10464 | gap 2, opp_overlap 2177251 2177254, overlap 2177227 GGATGAATCGCAACA TGCTGCGCCGGGT-AG-AACTGGC CTG GCCAGTCACGGACCCGGCGCAACG CCAGCGCATTGTTGA Rfer_2017 2175334 - 2177436 + | polyphosphate kinase TERM 2057 2177676 - 2177660 - g 71 -9.4 -3.79678 | opp_overlap 2177663 2177666 2177673 AAGTTGCGAGAAGAA CTGGCG CCGGC CGCCAG TGCCGACCAGTTGCT Rfer_2018 2177438 - 2177899 + | phosphohistidine phosphatase, SixA Rfer_2019 2178364 - 2177954 - | hypothetical protein TERM 2058 2178304 - 2178318 + g 70 -3.4 -4.64657 | overlap 2178304 2178306 2178316 2178317 CCTTGGCGCGAACCA CTGCTG GTG CGGCTG TTTTTGCAGATTTGG TERM 2059 2179125 - 2179114 - g 70 -4.4 -4.49311 | overlap 2179124 AGTACGAGTACAAAA CGTT GAAC AACG CTGGCGTCAGCATGT Rfer_2020 2178573 - 2180519 + | twin-arginine translocation pathway signal Rfer_2021 2180540 - 2181301 + | phospholipid/glycerol acyltransferase Rfer_2022 2181937 - 2181464 - | AsnC family transcriptional regulator TERM 2060 2182193 - 2182157 - H 86 -9.6 -4.27316 | gap 2, opp_overlap 2182163, overlap 2182163 GCGGGCAATGCAAAA CCA-GAACCCAG-GCGAA ACA TTCGCCCTGGGTTAATGG AATCTCTTAACCACC TERM 2061 2182186 - 2182163 - H 83 -11.8 -3.70033 | gap 1, opp_overlap 2182163, overlap 2182157 AATGCAAAACCAGAA CCCAG-GCGAA ACA TTCGCCCTGGG TTAATGGAATCTCTT TERM 2062 2182163 - 2182186 + H 78 -11.8 -3.18507 | gap 1, opp_overlap 2182157 2182163 AATGCAAAACCAGAA CCCAG-GCGAA ACA TTCGCCCTGGG TTAATGGAATCTCTT TERM 2063 2182447 - 2182408 - g 72 -2.3 -4.84359 | gap 1, opp_overlap 2182442 TGACTTTTAGAAAAA CAATGGATCGATATC-AC TTGGC GTCAATATCGCTGCATTG GCTGATGCTTGCCTT Rfer_2023 2182392 - 2182952 + | cytochrome B561 Rfer_2024 2184565 - 2183066 - | adenylate cyclase TERM 2064 2183210 - 2183222 + g 76 -5.5 -4.65895 | CGCCTGTTCATGCCA GCGTT GCG AGCGC TTTTTGGGTAGCAGC TERM 2065 2183373 - 2183383 + g 71 -8.2 -4.0098 | overlap 2183368 CGACGCCTGGCCCAG CCCC GCA GGGG TTCTTTGGGTTCAAG TERM 2066 2185569 - 2185582 + G 72 -2.3 -4.85599 | CCTGGCAGAGATGCA TGCCC TCAA GAGCA TTTTTGTGCAGTCGA Rfer_2025 2184823 - 2185944 + | putative carboxypeptidase Rfer_2026 2186100 - 2187188 + | patatin Rfer_2027 2187380 - 2187156 - | hypothetical protein Rfer_2028 2187434 - 2188282 + | hypothetical protein TERM 2067 2189461 - 2189487 + G 73 -10.1 -3.62096 | gap 1, overlap 2189463 GCCGCCGTTGAGGCT GCTCGCGCCGGT GAGC ACGGGCGCG-GC TTTGCGGTGGTGGCC TERM 2068 2189793 - 2189763 - g 82 -9.5 -4.29396 | overlap 2189764 AATGACCCAGCAAAA CGCGGCCGTCGTC GAGCA GTCGGCGGCCGCT GCCCAAAGCTTGCAG TERM 2069 2189792 - 2189764 - g 74 -13 -3.16914 | overlap 2189763 ATGACCCAGCAAAAC GCGGCCGTCGTC GAGCA GTCGGCGGCCGC TGCCCAAAGCTTGCA Rfer_2029 2188291 - 2189880 + | methyl-accepting chemotaxis sensory transducer Rfer_2030 2190042 - 2191838 + | diguanylate cyclase/phosphodiesterase Rfer_2031 2192993 - 2191845 - | twin-arginine translocation pathway signal Rfer_2032 2194685 - 2193168 - | Ppx/GppA phosphatase TERM 2070 2193805 - 2193832 + g 76 -9.8 -3.82097 | overlap 2193803 TCAAACAACAGTCCG TGCCGCAGGCCG CCCG TGGTCTGCTGCA TTTGATCGATTTCCA TERM 2071 2194894 - 2194929 + H 71 -4.6 -4.57569 | gap 1 ACCGGTCGGGCCATC GGGCGCTGCTGGCGCCA GCG TGGCGGCA-TAAAGCCC TTTTTGGCCGGGTGC TERM 2072 2195329 - 2195364 + G 85 -7.4 -4.79451 | opp_overlap 2195329 GCAACTGATGACCAA GGACTTGCCCGCGCTG GCCG CGGTGCTGGAAAGCCC TTTTGTCTTTGCGCT TERM 2073 2195674 - 2195691 + G 76 -9.1 -4.09685 | gap 1, overlap 2195641 GCGCCACAGCTGCAC CGCGCGGC ACT GCC-CGCG TTTTCGCGACTGCAG TERM 2074 2196339 - 2196353 + G 75 -2.8 -4.87665 | overlap 2196331 2196328 GGCTCAAGTCCGACA CCAG CTCGGGC CTGG TTTTTATGAGTGCCC TERM 2075 2196452 - 2196468 + G 77 -3.6 -4.96276 | overlap 2196431 2196430 ATCACCTCGGCGACG CTGACG AGTTG CGGCAG TTTTGATTTTTTTCT TERM 2076 2197124 - 2197155 + G 77 -14.4 -2.78463 | gap 1 ATGCTGCAGGGCTTG CCCGCCTACGCGGTG CTG CGCCGC-TCGGCGGG TGTGCTGCGGGCGAT dinG 2195024 - 2197174 + | ATP-dependent DNA helicase DinG Rfer_2034 2197270 - 2197569 + | hypothetical protein TERM 2077 2197614 - 2197649 + T 72 -11.8 -2.55351 | overlap 2197613 CCCACTCATACCCCC AACCCCTTTCTCGCCC CGCC GGGCGAAAAAGGGGAG CTTCATGTGGCCGCG TERM 2078 2197959 - 2197931 - T 91 -2.3 -5.80817 | CCCAACATAAAAAAA TGAAGCACTAAGA AAA TCAAAGCGCATCA CCCATATAGGACGGT Rfer_2035 2198648 - 2198004 - | hypothetical protein TERM 2079 2198483 - 2198496 + g 79 -9.5 -4.14472 | CGGCGGCGCGGCTCA GCGCG CGGG CGCGC TTTTCGGGCTGTTCA TERM 2080 2198653 - 2198696 + H 76 -10.4 -3.6279 | overlap 2198651 GATTTGGACATGGTG CGTCATTATGTGACCCAT GTTGCCTG ATGGGGCACGTCATGACG TTGTTGCGCCGCTTT Rfer_2036 2198775 - 2200838 + | TonB-dependent receptor TERM 2081 2201157 - 2201173 + G 89 -12.3 -4.09511 | overlap 2201146 CCGGTGCTGTGCGCG CTGCTGC CGC GCAGCAG TTTTGAGCGGGTCTT TERM 2082 2201357 - 2201329 - g 80 -10.1 -4.13767 | opp_overlap 2201309 GGCCCGAGTCGAAAA CGCAGGCGCCCAC TTT GAGAGCGCTCGCG CAGGCCAGGGGCTTG Rfer_2037 2200854 - 2201786 + | hypothetical protein TERM 2083 2202618 - 2202602 - g 70 -3.5 -4.72201 | overlap 2202604 CGCGAGAAAAAAGAA GAGGCCG AGA CCGCCAC GCGGGCCAAGTCGCG TERM 2084 2203676 - 2203664 - g 74 -6.2 -4.56775 | ACCCTGTTGCAAAAA CCGG TGCGT CCGG CCAAGCTGCGCAGCT Rfer_2038 2201783 - 2203744 + | periplasmic sensor hybrid histidine kinase Rfer_2039 2204355 - 2203717 - | two component LuxR family transcriptional regulator TERM 2085 2203760 - 2203781 + g 71 -8 -4.13767 | gap 1, overlap 2203767 CCCTGGCGGCTGGCA GCCAGCACC AGCTG GGTGC-GGC TTTTGACGTCAAAAG TERM 2086 2204067 - 2204048 - G 79 -7.8 -4.52589 | gap 1, overlap 2204049 TTCTTGGACAGAAAA CCGGCC-GC GCC GCTGGCCAG CGCCTTGCGCACCAT TERM 2087 2204317 - 2204292 - G 72 -11.1 -3.29144 | TCAGCCCCTGCAGAA CCTGGTGCAAG CCTT CGCGCACCAGG GCATGGTCATCGACA TERM 2088 2205619 - 2205643 + G 70 -5 -4.56597 | gap 1 CGACCTGGACCCCTT GCGCTACAACC TGCT GTTTG-AGCGC TTTTTGAACCCGGAA TERM 2089 2205934 - 2205920 - g 70 -4.2 -4.46112 | overlap 2205931 CCGGATCGAAAGAAA GACGAC AAA ACCGTC TATGCCGTCGAGGCC Rfer_2040 2204468 - 2208025 + | DNA polymerase III, alpha subunit TERM 2090 2208102 - 2208139 + T 71 -9.7 -3.51411 | overlap 2208103 2208117 2208119 CCCCACTCACTCCCC CAACCCCTCTCTCGCCC CGCC GGGCGAAAGAGGGGAGC TTCATTTGGCCGCGT TERM 2091 2208103 - 2208138 + T 79 -13.2 -2.70525 | overlap 2208102 2208117 2208119 CCCACTCACTCCCCC AACCCCTCTCTCGCCC CGCC GGGCGAAAGAGGGGAG CTTCATTTGGCCGCG TERM 2092 2208231 - 2208250 + T 77 -8.6 -4.19506 | gap 1 GACGAGACCGAGCAC CCAG-GCAG ATG CTGCGCTGG TTTTCAGCTTAGGCT Rfer_2041 2210477 - 2208522 - | ABC transporter related Rfer_2042 2210986 - 2210474 - | GCN5-related N-acetyltransferase Rfer_2043 2211929 - 2210997 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Rfer_2044 2213101 - 2211926 - | succinyl-diaminopimelate desuccinylase TERM 2093 2212515 - 2212541 + g 85 -7.1 -4.79223 | overlap 2212529 CCTTTGACGGTCAAG CGGGCGCTGAG CGTGC CGCGGCGGCCG TTTTTGATCATGTCG TERM 2094 2212723 - 2212689 - G 83 -4.9 -5.14563 | gap 1, overlap 2212690 2212691 2212701 CTGGTGAGCAAAAAA CCGATGGCCAAAGCCG TGTC CGGCTG-GGCCGTCAA AAACTCTTCAACCGC Rfer_2045 2214308 - 2213121 - | twitching motility protein dapD 2215174 - 2214350 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase Rfer_2047 2216439 - 2215210 - | hypothetical protein TERM 2095 2215441 - 2215429 - G 81 -4.7 -4.99043 | GGCCCATAAATAAAA GCCGG CGT CGGGC AGCGCCACGTCCAGC TERM 2096 2216242 - 2216209 - G 74 -11 -3.55761 | gap 2 CAGCCACTGGGCAAA GGCTTCGCGCAGGGCG GGCT CGCCCTGCGTG--GCC GGGTAGCTGGCCAGG Rfer_2048 2216699 - 2216508 - | hypothetical protein Rfer_2049 2218239 - 2216794 - | malonyl-CoA decarboxylase TERM 2097 2217682 - 2217655 - G 77 -11.4 -3.61371 | overlap 2217658 AAACGCCACGTCAAA CCAGCTGGAAAA AAGG TTTTCCAGCTCG CCGTCCAGGGCCAGC TERM 2098 2219460 - 2219408 - g 89 -12.7 -4.04174 | gap 1, opp_overlap 2219410, overlap 2219415 TTTCAGAGAATCAAA GATGAGATGCGTCGTGACCTGGCG ATTGAA CGCCTGGTCACGACGCG-CGAATC CATTGACCGGATTGC TERM 2099 2219454 - 2219415 - g 90 -19.3 -2.9955 | opp_overlap 2219410, overlap 2219408 GAATCAAAGATGAGA TGCGTCGTGACCTGGCG ATTGAA CGCCTGGTCACGACGCG CGAATCCATTGACCG Rfer_2050 2218559 - 2219584 + | AraC family transcriptional regulator Rfer_2051 2220547 - 2219636 - | periplasmic solute binding protein Rfer_2052 2221473 - 2220574 - | hypothetical protein Rfer_2053 2222282 - 2221470 - | ABC transporter related TERM 2100 2222401 - 2222352 - H 72 -11.3 -3.08073 | gap 1, opp_overlap 2222359 2222374 2222375, overlap 2222357 2222359 AGCACCGGCAACACA GCCAACACGCGCAGCCAGGCGGGC CAG GCCAACAC-GCTGCGCGTTTGGGC GGGCTGTTGCGCCTC TERM 2101 2222555 - 2222515 - H 83 -12.8 -3.29144 | opp_overlap 2222514 2222511 2222507 CGATTGCGGCGATAA TGCAACTGAATTGCGATA TAGTT TAACGCAACTCAATTGCA ATAATTGCCTGCCTT TERM 2102 2223050 - 2223033 - g 82 -12.7 -3.57561 | TTGCAAGCCCTCAAA GCCCTGG GCTA CCAGGGC CTGAGCCTGGATCTG Rfer_2054 2222592 - 2223137 + | ferric uptake regulator family protein TERM 2103 2223620 - 2223648 + G 70 -3.7 -4.72272 | overlap 2223621 2223622 ACATTCAGGTGGTCT TGACCTTGGCACG ATG CGTGTCGAGGGGG TTTTTGATGAGAGAA TERM 2104 2224467 - 2224488 + G 91 -7.9 -4.7629 | CTCAGTCCTGAAGCT GTTGCGCAG GATG CTGCGCCGC TTTTTGCCTTGATGC TERM 2105 2225570 - 2225585 + G 84 -6.1 -5.00616 | GGCCAAGGATGCCGG GCGCA ACACGC TGCGC TTTTTTGACCCCGAC TERM 2106 2225657 - 2225676 + G 75 -7.9 -4.15044 | TATGCGCCTTGGCCT GCAGGAA AACCAG TTCCTGC TTTATTACCAGCCGC TERM 2107 2225733 - 2225777 + G 72 -11.4 -3.40788 | gap 2 GGTGTTGAGGCGTTG GTGCGCTGGCAGCATCCACTGC GTG GCT-TGGTGGC-GCCAGCGCAC TTCATTCCCTTGGCT TERM 2108 2226339 - 2226367 + G 83 -2.4 -5.1675 | overlap 2226353 GGCTATTTCTTTGGT CGC-CCGGTTCCGG TCG CCG-AGCTGGCGTG TTTTTTAGTCGCTGA TERM 2109 2226353 - 2226365 + G 71 -6.9 -4.2131 | overlap 2226339 TCGCCCGGTTCCGGT CGCCG AGC TGGCG TGTTTTTTAGTCGCT Rfer_2055 2223282 - 2226386 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rfer_2056 2226393 - 2227340 + | auxin efflux carrier Rfer_2057 2228004 - 2227348 - | lysine exporter protein LysE/YggA TERM 2110 2227648 - 2227616 - G 100 -9.8 -4.7497 | gap 1, opp_overlap 2227621, overlap 2227618 2227620 TTGAGCCATGAAAAA GCCAGCGCGGCCAGG ATGG CCTGGCGGCG-TGTC ATGACGACCTCATCA TERM 2111 2227621 - 2227644 + g 73 -13.8 -2.78596 | opp_overlap 2227620 2227618 2227616 CCATGAAAAAGCCAG CGCGGCCAGG ATGG CCTGGCGGCG TGTCATGACGACCTC TERM 2112 2227755 - 2227768 + g 71 -9.5 -3.76482 | GGAACAGGATGCCAC CGCCC ACCA GGGCG TTCTTGATCGTGTCA TERM 2113 2227832 - 2227815 - G 73 -4.9 -4.62783 | GACCCAGGCCAAAAA TGCTCAT GCCA ATGAACA GCACGTCCGACAGAA TERM 2114 2228252 - 2228264 + G 71 -9.1 -3.78775 | AGGGCCTGGAGTCCG CGCTG GGG CAGCG TTTGCTGGTGCGCGG Rfer_2058 2228125 - 2229036 + | chromosome replication initiation inhibitor protein Rfer_2059 2229821 - 2229045 - | pyridoxamine 5'-phosphate oxidase TERM 2115 2230056 - 2230020 - H 95 -14.4 -3.51411 | gap 1, overlap 2230016 2230021 ACGCGGCCAAATGAA GCTCCCCTCTTCCGCCC GGCG GGGCGGGAGAGGGG-GT GGGGGTGTGAGTGGG TERM 2116 2230055 - 2230021 - H 95 -17.9 -2.70525 | gap 1, overlap 2230020 2230016 CGCGGCCAAATGAAG CTCCCCTCTTCCGCCC GGCG GGGCGGGAGAGGGG-G TGGGGGTGTGAGTGG TERM 2117 2231222 - 2231234 + G 74 -6.2 -4.56607 | ACCAGTTCCAGGCCG CCGG TGGAC CCGG TTTTGTGATTCGTGA TERM 2118 2231611 - 2231598 - g 76 -9.5 -4.07885 | opp_overlap 2231598 2231598 CATGTGCCTGGAAAA CGCCG CCGG CGGCG TGGTGTGTGTGGTGC Rfer_2060 2230171 - 2232021 + | phosphogluconate dehydratase TERM 2119 2232500 - 2232511 + G 83 -4.4 -5.0538 | overlap 2232479 GCCATGCTCAAAGCC TGGA GTGG TCCA TTTTTTGACGTCAAG Rfer_2061 2232053 - 2232688 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Rfer_2062 2234134 - 2232731 - | patatin Rfer_2063 2234835 - 2234200 - | toluene tolerance TERM 2120 2234352 - 2234363 + g 84 -5.8 -5.00884 | TCTTCCAGCCAAGCC CCTC GCCA GAGG TTTTTTCCAGCCGGT Rfer_2064 2236331 - 2234832 - | RND efflux system, outer membrane lipoprotein, NodT Rfer_2065 2239482 - 2236324 - | hydrophobe/amphiphile efflux-1 HAE1 TERM 2121 2236877 - 2236894 + g 70 -3.3 -4.65916 | CCGTACAGGACCATG GCCTGCG CGCC TGCAAGC TTTTCTTCGCGTGAC TERM 2122 2236946 - 2236956 + g 85 -6.8 -4.81249 | AAGCCTTCAGGAAGT CTGG CGG CCAG TTTTTCCATTTCGGC TERM 2123 2236965 - 2237015 + g 71 -6.8 -4.28548 | gap 1, overlap 2236965 CGGCCAGTTTTTCCA TT-TCGGCCATGGCGTCCCCGGT ACTGAA ACCGGGCCCGGCATCGCCGGCAA TTTTCATGGCTGGAT Rfer_2066 2240781 - 2239495 - | secretion protein HlyD TERM 2124 2240625 - 2240660 + g 74 -11.3 -3.53012 | gap 3 CCACCTCGGCGGGCG GCA-TACCGC-CCG-CGG GGC CCGCCGGTGCGGTACTGC TTTGGCCGCAGCCCG Rfer_2067 2240926 - 2241576 + | TetR family transcriptional regulator TERM 2125 2242445 - 2242468 + G 81 -13.9 -3.31792 | AGGTACTGGCTGACC TGGCGGCCT CGACCC AGGCCGCCA TTGTCGAAGTGCTGG Rfer_2068 2241691 - 2242767 + | glycoprotease family metalloendopeptidase Rfer_2069 2243613 - 2242843 - | 3-hydroxybutyrate dehydrogenase TERM 2126 2243915 - 2243936 + G 77 -15.1 -2.69468 | overlap 2243911 CAGGCCTTATGCGAG CGCGCGGGC GACA GCCTGCGCG TGGTGTGTCCGGATG TERM 2127 2244617 - 2244627 + G 83 -2.4 -5.1675 | opp_overlap 2244617, overlap 2244610 TGCGATCAGGTGAAA GCGG TCG CCTC TTTTTTACTGGATGA Rfer_2070 2243747 - 2244646 + | alpha/beta hydrolase TERM 2128 2245200 - 2245248 + G 79 -12.3 -3.54424 | gap 1, overlap 2245202 GCGCTTTTTTGCCGC TGCCCGCCAGGCCGCGC-CGCC CGGTGT GGCGCGCGAGGCCTTGCAGGTG TTTGCGCCGCTGGCC TERM 2129 2245202 - 2245246 + G 86 -14.9 -3.35046 | gap 1, overlap 2245200 GCTTTTTTGCCGCTG CCCGCCAGGCCGCGC-CGCC CGGTGT GGCGCGCGAGGCCTTGCAGG TGTTTGCGCCGCTGG TERM 2130 2245380 - 2245368 - g 79 -9.1 -4.25104 | TCTGCTCGATGAAAA GCGCT CCG AGCGC GAGTTGCACGTTGAG Rfer_2071 2244661 - 2246916 + | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA TERM 2131 2247141 - 2247158 + G 80 -4.1 -5.02074 | overlap 2247144 CCCCCTCATGCTGTA TTGCCAG CCGG CTGGTGA TTTTTTGCCGGATCC TERM 2132 2247552 - 2247576 + G 74 -12.8 -3.14132 | opp_overlap 2247526 TGCCTTGAGCGACGT GCGCGCCACC ATCGC GCTGGCGCGC TTGATCAAGACGGCG TERM 2133 2248090 - 2248066 - g 74 -11.3 -3.53012 | opp_overlap 2248089, overlap 2248040 CCGGCGGTGTTCAAA CGCCCAGCGGC CGC GACGCCGGACG TGGACGAAGATCTCT TERM 2134 2248275 - 2248304 + G 71 -7.1 -4.15044 | gap 1, overlap 2248276 2248303 GAGCGCTGACGAGCT GGCGCGCTG-GG AAGCCCA CCGCAGCGCGCG TTTGTTCGACGGCGA sbcB 2246995 - 2248452 + | exonuclease I Rfer_2073 2249202 - 2248555 - | uracil phosphoribosyltransferase Rfer_2074 2250861 - 2249281 - | protein of unknown function DUF853, NPT hydrolase putative TERM 2135 2249580 - 2249596 + g 71 -9.3 -3.75115 | CGGCTGCGTCCAGTC GTGCCGC GGT GCGGCCC TTGATTTTCTCGAAC TERM 2136 2249742 - 2249754 + g 73 -4.7 -4.72272 | overlap 2249731 2249743 AGACCCGCTGCGTGA TGCCG GGG CGGCC TTTTTCGTCCAGAAA Rfer_2075 2250920 - 2251654 + | hypothetical protein TERM 2137 2252309 - 2252286 - g 76 -5.3 -4.62069 | gap 1, overlap 2252288 GGTGGACGGCAAAAA TGTGCTGGCG CTGGC CACCAGC-CA GGACCACAAGCGCCT Rfer_2076 2251651 - 2252967 + | phosphoribosylamine--glycine ligase TERM 2138 2253512 - 2253548 + G 90 -5.8 -5.25656 | gap 2, opp_overlap 2253518, overlap 2253511 2253515 2253545 TGACTACTTCTACCT GAAGC-A-CCGCGCCGAG CCG CGCGGCGTGGGTGGCATC TTTTTTGATGATTTT Rfer_2077 2252964 - 2253896 + | coproporphyrinogen III oxidase Rfer_2078 2253898 - 2254494 + | putative nicotinate-nucleotide adenylyltransferase Rfer_2079 2254494 - 2255279 + | Iojap-related protein Rfer_2080 2255289 - 2255756 + | hypothetical protein Rfer_2081 2255788 - 2256390 + | Maf-like protein TERM 2139 2256775 - 2256798 + G 73 -4.6 -4.63218 | gap 1, overlap 2256776 GGCTGTCCACGCAGA TCAGCAT-TGC CGG GCGCATGCTGG TTTTCTTGCCACAGG TERM 2140 2257789 - 2257777 - g 79 -9.1 -4.24342 | opp_overlap 2257777 TTCTGGATGAAGAAA GCCAG CAC CTGGC GGGCTTGAGTGAGTT Rfer_2082 2256402 - 2257877 + | ribonuclease TERM 2141 2258476 - 2258488 + G 85 -3.3 -5.39721 | GATTCAGCAGGCTGT GCCCA ACG TGGCC TTTTTTGTGTCGTGC Rfer_2083 2257967 - 2258899 + | hypothetical protein TERM 2142 2259032 - 2259043 + F 74 -7.2 -4.12603 | TGTGGTGCTTTTGTA GGCC GCGT GGCC TTATTGTTTGATGCC TERM 2143 2259116 - 2259140 + G 79 -12.9 -3.55071 | opp_overlap 2259112, overlap 2259132 2259133 GTACCACCAGATTGA GACTGCGCC GCCCAAG GGCGCAGTC TTTCGAAGCCTGTGC Rfer_2084 2259054 - 2259803 + | polysaccharide deacetylase Rfer_2085 2259845 - 2261050 + | glycosyl transferase, group 1 TERM 2144 2261046 - 2261059 + T 75 -6.7 -4.47271 | CGACAGGTTCTTCGT CGTGA GCGA TCACG TTTTAATTCAATTTA Rfer_2086 2261946 - 2261122 - | glycosyl transferase family protein TERM 2145 2261925 - 2261935 + g 80 -3.2 -5.15167 | AGCAAGCGAAGGTTA TGGC GTA GCTA TTTTTGTTCATGGTC Rfer_2087 2262990 - 2262073 - | lipopolysaccharide biosynthesis protein-like Rfer_2088 2263599 - 2263003 - | hypothetical protein Rfer_2090 2265516 - 2263771 - | Lipid A export ATP-binding/permease protein MsbA TERM 2146 2265532 - 2265551 + r 93 -9.2 -4.81851 | TTGTCGATTTGCCTG GGCGCCTG CCAT TGGGCGCC TTTTTGAATTTCGAT Rfer_2091 2266295 - 2265513 - | glycosyl transferase family protein TERM 2147 2266237 - 2266247 + g 70 -3.2 -4.68506 | CGGGCGCTTTCAATG GTCG CTG TGAC TTTTTCGACTTCGTT Rfer_2092 2266481 - 2267758 + | TolB-like Rfer_2093 2267778 - 2268311 + | OmpA/MotB Rfer_2094 2268317 - 2269096 + | tetratricopeptide TPR_2 Rfer_2095 2269128 - 2269871 + | UBA/THIF-type NAD/FAD binding protein Rfer_2096 2270967 - 2269888 - | NlpBDapX lipoprotein TERM 2148 2270846 - 2270865 + g 85 -12.2 -3.75863 | overlap 2270861 TGGGTTAAGTCTGGG GGCACTTC AAGC GAAGTGCC TTTGCTGGCGCTTTT TERM 2149 2270861 - 2270876 + g 70 -3.9 -4.59117 | overlap 2270846 GGCACTTCAAGCGAA GTGCC TTTGCT GGCGC TTTTGTAATTGATTT Rfer_2097 2271904 - 2271011 - | dihydrodipicolinate synthase Rfer_2098 2272525 - 2271941 - | hypothetical protein TERM 2150 2272560 - 2272547 - R 71 -4.5 -4.57073 | GATCTGCTTTAAAAA CAGGC CCAA ACCTG ATTGGCCAAGGTGAC Rfer_2099 2273892 - 2272672 - | major facilitator transporter Rfer_2100 2274711 - 2274106 - | NLP/P60 Rfer_2101 2276537 - 2274708 - | FAD dependent oxidoreductase TERM 2151 2274963 - 2274975 + g 70 -3.3 -4.58283 | opp_overlap 2274970, overlap 2274958 2274929 CAACCGGTCAGCGGT GACGC AAC GCGTG TTTTTCCAGGCGTTG Rfer_2102 2276822 - 2276550 - | hypothetical protein TERM 2152 2276690 - 2276711 + g 71 -7.9 -4.0031 | CCAGCATGGTTTGAT GCTTGAGCC AGTC GGCCCAGGC TTGTTTGCTCACGCT TERM 2153 2276983 - 2276972 - g 78 -2.2 -5.06505 | opp_overlap 2276982, overlap 2276978 2276979 AAGCAGACACAAAAA CCAA AATG CTGG CCGATGGCCTGCGTT TERM 2154 2276996 - 2276978 - g 81 -5.8 -4.84033 | opp_overlap 2276982, overlap 2276972 2276979 ACACAAAAACCAAAA TGCTGGCC GAT GGCCTGCG TTACAAATCCAAAGT Rfer_2103 2276950 - 2277183 + | hypothetical protein TERM 2155 2277245 - 2277267 + F 83 -8.4 -4.42386 | opp_overlap 2277245, overlap 2277236 TCAAGCCGCCCCAAA TCATCGGGCG TTT CGTCCCATGA TTTTCTCCATGAAGG Rfer_2104 2277289 - 2277813 + | disulphide bond formation protein DsbB Rfer_2105 2279227 - 2277872 - | N-acetylglutamate synthase TERM 2156 2282181 - 2282123 - g 74 -12.2 -3.13403 | opp_overlap 2282179 GGTGGTGGACGAACA TGGCCGCCAGCTCGGCACCGGGCGCAAC CTG GGTGCGCTCAAGGCCGAACTCGGTGCCA AGGCGCGTGGTGCGT Rfer_2106 2279307 - 2283203 + | ATP-dependent helicase HrpA TERM 2157 2283509 - 2283525 + G 100 -7.9 -5.35354 | TGGCTGATTGGCGTG GCGGGCA TGC TGGCCGC TTTTTTGATTCTGTC TERM 2158 2284026 - 2284040 + G 79 -7.8 -4.57837 | overlap 2284033 TGTGCATCTCGATGC TGGCGG GTA TCGCCA TTTTTCCGGCGGTAT Rfer_2107 2283200 - 2284585 + | sodium:neurotransmitter symporter Rfer_2108 2285239 - 2284805 - | hypothetical protein Rfer_2109 2286530 - 2285394 - | glucose sorbosone dehydrogenase TERM 2159 2286301 - 2286329 + g 73 -10.2 -3.67864 | CCCCCCGCGGCGACC GTGGGTACGCCG GCCAG CGGGGCACCCAC TTTGCCGTTCGCTTC Rfer_2110 2287475 - 2286579 - | hypothetical protein Rfer_2111 2288997 - 2287837 - | putative aminotransferase Rfer_2112 2289981 - 2289028 - | transcriptional regulator CysB-like protein TERM 2160 2289142 - 2289125 - G 75 -2.6 -4.88405 | overlap 2289127 AATTTGTAAACAAAA TTGCGC AGGTAG GCGCCA CGTTTGAAGGCGACG TERM 2161 2289194 - 2289183 - G 85 -7.2 -4.86731 | overlap 2289185 TCTGGCCAAACAAAA GCCC GGCG GGGC GCACGACCAGATCGC Rfer_2113 2290429 - 2290058 - | cobalamin (vitamin B12) biosynthesis CbiX protein Rfer_2114 2291570 - 2290464 - | permease YjgP/YjgQ Rfer_2115 2292688 - 2291567 - | permease YjgP/YjgQ TERM 2162 2291804 - 2291792 - G 76 -5.5 -4.62203 | overlap 2291794 2291797 GGCAAACAAGGAAAA CACCA GGT TGGCG CTGCGCCCAACGCGT TERM 2163 2293282 - 2293296 + G 76 -5.6 -4.72272 | opp_overlap 2293281 CTGTGTCAAATTCAT CCGGGT TCA AGCCGG TTTTTGATCGGGCCG TERM 2164 2293564 - 2293550 - g 71 -5.6 -4.37886 | overlap 2293552 TGACGGTGCACAAAA GTCCGC GGC GCCGAC GGTCCTGCTGGGCAA Rfer_2116 2292828 - 2294267 + | leucyl aminopeptidase Rfer_2117 2294285 - 2294719 + | DNA polymerase III subunit chi Rfer_2118 2294719 - 2295021 + | hypothetical protein Rfer_2119 2295148 - 2296278 + | extracellular ligand-binding receptor TERM 2165 2296303 - 2296318 + T 100 -9 -5.45652 | opp_overlap 2296303 GCAGCGGAAAAAAAA GCCATC TTCG GATGGC TTTTTTCTTGGCCCT TERM 2166 2296318 - 2296303 - T 100 -9 -5.78622 | opp_overlap 2296303 GCAGCGGAAAAAAAA GCCATC TTCG GATGGC TTTTTTCTTGGCCCT TERM 2167 2296515 - 2296483 - T 70 -10 -3.32844 | gap 1, opp_overlap 2296475 2296488 2296505, overlap 2296488 TCCGCCAGTTGATAA GTG-AATACGGGCCT TTTG AGGCCCGTATTTCAT GCGGCTTTTGCCGGG TERM 2168 2296509 - 2296488 - T 95 -14.5 -3.2375 | opp_overlap 2296488 2296475 2296505, overlap 2296483 CAGTTGATAAGTGAA TACGGGCCT TTTG AGGCCCGTA TTTCATGCGGCTTTT TERM 2169 2296488 - 2296509 + T 95 -14.5 -3.75863 | opp_overlap 2296483 2296488, overlap 2296475 2296505 CAGTTGATAAGTGAA TACGGGCCT TTTG AGGCCCGTA TTTCATGCGGCTTTT Rfer_2120 2297446 - 2296538 - | ornithine carbamoyltransferase Rfer_2121 2298713 - 2297499 - | acetylornithine aminotransferase TERM 2170 2297926 - 2297900 - G 100 -12.3 -4.56597 | gap 1 TGCCGGGCTGAAAAA TGGCGGC-GGCC TTGG GGCCTGCCACCA CCGCACCGACTGGCA TERM 2171 2298434 - 2298420 - G 75 -2.1 -4.91109 | GGTGGAGCAGAAAAA GACAT TGCTC ATGCC CGACAGCTCGACCAA TERM 2172 2298823 - 2298800 - R 100 -12.4 -4.86385 | opp_overlap 2298794, overlap 2298801 AGGCTCAAAAATAAA GCGGCCCAAC GTGG GTTGGGCCGT TGAAGCGTGATTTTA TERM 2173 2298822 - 2298801 - R 100 -15.9 -3.50746 | opp_overlap 2298794, overlap 2298800 GGCTCAAAAATAAAG CGGCCCAAC GTGG GTTGGGCCG TTGAAGCGTGATTTT TERM 2174 2298914 - 2298945 + r 90 -10.2 -4.25104 | opp_overlap 2298922, overlap 2298915 2298920 2298922 CAGACAGGTGTTCCA ACAAAAAAGCCGTC TTTC GACGGCTCTTTTGC TTTTGCTGACAGCGC TERM 2175 2298915 - 2298944 + r 84 -13.7 -3.14848 | opp_overlap 2298922, overlap 2298914 2298920 2298922 AGACAGGTGTTCCAA CAAAAAAGCCGTC TTTC GACGGCTCTTTTG CTTTTGCTGACAGCG TERM 2176 2298920 - 2298939 + r 86 -7.8 -4.70319 | opp_overlap 2298922, overlap 2298915 2298914 2298922 GGTGTTCCAACAAAA AAGCCGTC TTTC GACGGCTC TTTTGCTTTTGCTGA TERM 2177 2298922 - 2298937 + r 83 -10.4 -3.95369 | opp_overlap 2298922, overlap 2298920 2298915 2298914 TGTTCCAACAAAAAA GCCGTC TTTC GACGGC TCTTTTGCTTTTGCT TERM 2178 2298937 - 2298922 - R 100 -10.4 -5.4505 | opp_overlap 2298922 2298920 2298915 2298914 TGTTCCAACAAAAAA GCCGTC TTTC GACGGC TCTTTTGCTTTTGCT Rfer_2122 2299324 - 2299022 - | ribosomal protein S20 TERM 2179 2299066 - 2299085 + g 70 -5 -4.52873 | gap 1, opp_overlap 2299065, overlap 2299028 2299026 2299065 2299077 CCTTGGTCGACAGAC GGCT-CTTG TCA CGAGCAGCC TTGTTTTTGTGGAAG TERM 2180 2299077 - 2299088 + g 72 -2.2 -4.83615 | opp_overlap 2299065, overlap 2299065 2299066 AGACGGCTCTTGTCA CGAG CAGC CTTG TTTTTGTGGAAGATG TERM 2181 2299276 - 2299298 + g 84 -4.1 -5.17507 | overlap 2299278 GACGGACGCGTTTAC GG-CCCGACGC CAG GCG-CGGGTTC TTTTTCTTGGGTTTT TERM 2182 2299278 - 2299295 + g 85 -9.1 -4.64495 | gap 1, overlap 2299276 CGGACGCGTTTACGG CCCGACGC CAG GCG-CGGG TTCTTTTTCTTGGGT TERM 2183 2299722 - 2299778 + G 100 -18.6 -3.61922 | opp_overlap 2299667, overlap 2299716 GTCATCGGCGTGGCG GCAGCGCCGGCCCTGGTGTGGGCCAT GGCCA GTGGCCTGCAACAGGACCCGCGCGGC TTTGAGGTGGCTATT TERM 2184 2300740 - 2300770 + G 73 -4.7 -4.66938 | gap 2, opp_overlap 2300750 2300751, overlap 2300750 GCCTCATGCGGCGTG GCAGCTACAAGCCCG AGC CGGG-TTGGGGC-GC TTTTGTGTTGCAGGT Rfer_2123 2299338 - 2300975 + | integral membrane protein MviN TERM 2185 2301005 - 2301046 + T 100 -15.9 -4.1196 | opp_overlap 2301012, overlap 2301006 2301008 GTTGGGCCTTCAACG CCAGGAAGCCGTCGTTTTC GAAT GGATGCGACGGCTTCCTGC TTTTGACAGTCGCTT TERM 2186 2301006 - 2301045 + T 100 -19.4 -3.06694 | opp_overlap 2301012, overlap 2301005 2301008 TTGGGCCTTCAACGC CAGGAAGCCGTCGTTTTC GAAT GGATGCGACGGCTTCCTG CTTTTGACAGTCGCT TERM 2187 2301008 - 2301043 + T 100 -16.2 -3.09004 | opp_overlap 2301012, overlap 2301006 2301005 GGGCCTTCAACGCCA GGAAGCCGTCGTTTTC GAAT GGATGCGACGGCTTCC TGCTTTTGACAGTCG Rfer_2124 2301971 - 2301060 - | band 7 protein TERM 2188 2301145 - 2301164 + g 77 -11.4 -3.60296 | GGCACAATCAGCGTG GTGGTGGC CTCT GCCGCCAC TTTGGAATAGGCGTC Rfer_2125 2302426 - 2302001 - | hypothetical protein TERM 2189 2303498 - 2303481 - g 81 -5.6 -4.7629 | CCATCAAGGCAAAAA TCAAGG CCAACC CCTTGA TCAAGGAGCATCTGC TERM 2190 2303728 - 2303710 - g 73 -4.5 -4.59773 | TGCGATGGGTAAAAA GCGCTCG CGCCC CAAGCAC GCCATGGTCTATGCC Rfer_2126 2302559 - 2304847 + | lysine decarboxylase TERM 2191 2304895 - 2304857 - T 100 -16.4 -4.19238 | opp_overlap 2304862, overlap 2304862 TCCTGAATCGGAAAA TAAAATAGGTAGCTATAA ATA TTATAGCTACCTATTTAA CAGGGACGGGGGCTA TERM 2192 2304862 - 2304890 + T 100 -16.3 -3.53012 | opp_overlap 2304862 2304857 AATCGGAAAATAAAA TAGGTAGCTATAA ATA TTATAGCTACCTA TTTAACAGGGACGGG TERM 2193 2304890 - 2304862 - T 100 -16.3 -5.10163 | opp_overlap 2304862, overlap 2304857 AATCGGAAAATAAAA TAGGTAGCTATAA ATA TTATAGCTACCTA TTTAACAGGGACGGG Rfer_2127 2305709 - 2304924 - | short-chain dehydrogenase/reductase SDR TERM 2194 2305765 - 2305779 + H 76 -10 -3.88583 | opp_overlap 2305748 2305776, overlap 2305776 TCGCCGTGTCGGAAT CGGCTT GAA AAGCCG TTTATAGCGGCTTTC TERM 2195 2305799 - 2305818 + H 70 -9.2 -3.72027 | opp_overlap 2305801 TAGCGGCTTTCATCA CACCCGCC TGAC GGCAGGTG TTGTTGATGCAGAAT TERM 2196 2305834 - 2305847 + G 90 -4.5 -5.39407 | opp_overlap 2305834, overlap 2305835 TTGTTGATGCAGAAT TGTCG CATG CGACG TTTGTTTTTTTTATG Rfer_2128 2305825 - 2307636 + | extracellular solute-binding protein TERM 2197 2307912 - 2307926 + G 71 -5.6 -4.34402 | overlap 2307913 TTTCCTGCAAATGCT GGGGCA ATT TGCCCG TTTTGATCTGGGGCG TERM 2198 2308074 - 2308085 + G 74 -7.2 -4.39571 | GGCCAAAGCGGTGCG CGCG GGTT CGCG TTTTGACTTTGTCAC TERM 2199 2308462 - 2308475 + G 85 -2.3 -5.41143 | overlap 2308443 ACCGGCTTCCCGGCG GCGTT TATT GGCGC TTTTTTTACCGGCTC Rfer_2129 2307640 - 2308674 + | binding-protein-dependent transport systems inner membrane component Rfer_2130 2308658 - 2309797 + | binding-protein-dependent transport systems inner membrane component TERM 2200 2309829 - 2309843 + G 72 -12.8 -3.04144 | overlap 2309841 TTCGCGTACTGCGCT GCCCCC CGA GGGGGC TGTTCCGCCTAAGGG TERM 2201 2310493 - 2310483 - g 71 -8.2 -4.11216 | TTTTCAGGCCCAAAA CGGC ATG GCCG TGCTCATGATCACCC Rfer_2131 2309794 - 2311491 + | ABC transporter related TERM 2202 2311564 - 2311544 - f 82 -11.1 -3.78775 | opp_overlap 2311530 2311544 CCCCTCACGACCAAA CGGGCGG GTATCTA CCGCCCG TTTTTTTTGGTCGAT TERM 2203 2311544 - 2311564 + F 100 -11.1 -5.86965 | opp_overlap 2311544, overlap 2311530 CCCCTCACGACCAAA CGGGCGG GTATCTA CCGCCCG TTTTTTTTGGTCGAT TERM 2204 2312102 - 2312124 + G 75 -8.4 -4.19238 | gap 1, opp_overlap 2312101 2312100, overlap 2312102 AGTAAAAAAAGATTG CCC-GCGCC GCTGCA GGCGCTGGG TTTTACGCTTGACGA Rfer_2132 2311607 - 2312221 + | hypothetical protein TERM 2205 2312617 - 2312605 - g 80 -3.3 -5.02074 | TCATCCTGCAAAAAA TCCGC GAC GCCGA GCGTGAAATGCTGCT TERM 2206 2312641 - 2312661 + G 80 -3.9 -5.06414 | overlap 2312643 2312644 TGCTGCTCAATGACT TCATGTCGC GTG GCGACAATA TTTTTGTTGGCACCG TERM 2207 2312643 - 2312659 + G 71 -6.5 -4.16307 | overlap 2312641 2312644 CTGCTCAATGACTTC ATGTCGC GTG GCGACAA TATTTTTGTTGGCAC Rfer_2133 2312244 - 2313740 + | NusA antitermination factor TERM 2208 2314365 - 2314336 - g 100 -2.1 -5.7946 | gap 2, overlap 2314340 CGCTCAAGAAAAAAA GCAAGCCGGTGGC GCCCGA GCAACCGGC--GC CAAATCCGACTGAAA TERM 2209 2314363 - 2314340 - g 76 -9.5 -4.12421 | overlap 2314336 CAAGAAAAAAAGCAA GCCGGTGGC GCCCGA GCAACCGGC GCCAAATCCGACTGA TERM 2210 2314723 - 2314677 - g 79 -13 -3.53012 | gap 3 GCCGTGCCTGCGAAA CCGGCCAAGCCTGGGGCACCTGG TGCA CCTGGTGCACC-GGC--GGCCGG AGCCGCTGCGGGCGC TERM 2211 2314814 - 2314803 - g 88 -2.2 -5.4833 | overlap 2314807 CCAGCGAAGAAAAAA GGTA TTCC CACC CGTGGCGCCACAGCG TERM 2212 2316295 - 2316274 - g 72 -12.9 -3.02144 | TCATTGGTTTCAACA CCCGCGCCG ATGC CGGCGCGCG CAAGCTGGCCGAGAA TERM 2213 2316488 - 2316517 + G 71 -9.1 -3.72576 | overlap 2316490 2316492 CTGTATGGTCACTGC CGGCGTCGTGCGG CGCA CCGCGCGGCTGCG TTTGCTGCGCGACAA Rfer_2134 2313765 - 2316701 + | translation initiation factor IF-2 Rfer_2135 2316730 - 2317098 + | ribosome-binding factor A TERM 2214 2317107 - 2317153 + G 85 -16.4 -3.14211 | opp_overlap 2317108, overlap 2317109 GGATTGATCCGATGA ATGCGCCGCGTGCACGGGTTGC CAG GCGCCCCGTGCACGGGGTGCTG TTGCTGGACAAGCCT TERM 2215 2317152 - 2317108 - g 85 -15.5 -3.16881 | opp_overlap 2317107 2317109 GATTGATCCGATGAA TGCGCCGCGTGCACGGGTTGC CAG GCGCCCCGTGCACGGGGTGCT GTTGCTGGACAAGCC TERM 2216 2317109 - 2317151 + G 100 -23.4 -3.13403 | opp_overlap 2317108, overlap 2317107 ATTGATCCGATGAAT GCGCCGCGTGCACGGGTTGC CAG GCGCCCCGTGCACGGGGTGC TGTTGCTGGACAAGC Rfer_2136 2317103 - 2318119 + | tRNA pseudouridine synthase B TERM 2217 2318303 - 2318286 - g 76 -5.5 -4.67011 | overlap 2318289 AACGCCATCGAAAAA GAGCGTG GCAT CACGATC CTGGCCAAGAACTGC Rfer_2137 2318133 - 2319956 + | GTP-binding protein TypA Rfer_2138 2320007 - 2320849 + | hypothetical protein TERM 2218 2321091 - 2321105 + G 88 -2.1 -5.52384 | gap 1, overlap 2321092 TGGCGCCTTTTGCGC CGG-TG GTGA CATCCG TTTTTTTCATCAGGC Rfer_2139 2320846 - 2321988 + | enoyl-CoA hydratase TERM 2219 2322056 - 2322035 - T 100 -12.3 -5.75342 | TTTTTCCAAAAAAAA GGGCTGATC TTGC GACCAGCCC TTAAGGAGTCCCTGA TERM 2220 2322153 - 2322170 + T 70 -5.5 -4.39828 | opp_overlap 2322152 ACTGGTATGAAGTAT CTCAGGG TTTG CCCTAAG TTTTGTAGAGATGTT Rfer_2140 2322776 - 2322234 - | phasin TERM 2221 2322529 - 2322544 + g 81 -4.6 -5.00616 | ATGTCATACAGATGG CGGCTG TAGG CGGCTG TTTTTTCAGCCAACG Rfer_2141 2322972 - 2323466 + | thioesterase superfamily protein Rfer_2142 2323463 - 2324173 + | nitroreductase TERM 2222 2324530 - 2324559 + G 81 -13.5 -3.32562 | opp_overlap 2324529 2324533, overlap 2324519 2324531 CTCAAGATCAGCAAG TCAGCCTCCGCCC TGAT GGGCGCGGGCTGG TTGTGGACCATTTAT TERM 2223 2324531 - 2324558 + G 76 -14.8 -2.59055 | opp_overlap 2324529 2324533, overlap 2324530 2324519 TCAAGATCAGCAAGT CAGCCTCCGCCC TGAT GGGCGCGGGCTG GTTGTGGACCATTTA TERM 2224 2325194 - 2325208 + G 75 -2.7 -4.99568 | overlap 2325195 CCGTGACGCACCTGC CGCCC TTCAT GGGCA TTTTGTTTGGTCTTG Rfer_2143 2324452 - 2325735 + | putative Na+/H+ antiporter TERM 2225 2326245 - 2326276 + G 73 -10.1 -3.60296 | gap 1 GTATGGGCCGCATCG GCCA-GGGCATCGC CAAAC GCGGCGCCCATGGC TTTGGCATGCAGGTG TERM 2226 2326329 - 2326303 - g 79 -12.3 -3.4252 | opp_overlap 2326312 GGTGATTTACCACAA TCGATCGCGGC TGGAT GCCGCAACCGA GCTTGAATGCAAGGC Rfer_2144 2325773 - 2326756 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Rfer_2145 2329768 - 2326892 - | AMP-dependent synthetase and ligase TERM 2227 2329705 - 2329729 + g 81 -4.2 -4.90778 | gap 2, opp_overlap 2329702, overlap 2329706 2329707 GCGTACAGGCAATCC CG--CGCCCCCC AAG GGGGGCCGATCG TTTTGTTTCGCTGGA Rfer_2146 2330615 - 2329872 - | hypothetical protein TERM 2228 2330015 - 2329997 - G 100 -8.8 -4.87665 | opp_overlap 2329996 CGCTACCGAGAAAAA CCGTACCC AGC GCGTACGG AATTTCGGTGAGCAT Rfer_2147 2331816 - 2330743 - | hypothetical protein TERM 2229 2330846 - 2330820 - G 76 -12.3 -3.34501 | overlap 2330836 2330838 ACAGAATCGCCAGAA TCACCGGCCCG ACAAA CAGGCCGATGA GCCCGAACGCCACCA TERM 2230 2331331 - 2331321 - G 100 -2.4 -5.86332 | GCAAGGCAAAAAAAA GGCG CAG CGCA TTCAAACCAAGATCA TERM 2231 2331847 - 2331859 + H 74 -3.3 -4.8622 | opp_overlap 2331847, overlap 2331846 2331847 CGATAGACAAGATAA GCACA GTG TGCGC TTTTTGGTTCGGCGG Rfer_2148 2332011 - 2332892 + | hypothetical protein TERM 2232 2332909 - 2332927 + G 71 -8.9 -3.81146 | ATATGCGCTGGCAAT GGCAATC ATGGC GATTGCC TTGTTGGTTGCCGCG TERM 2233 2333201 - 2333227 + G 78 -16.5 -2.63079 | overlap 2333198 2333197 TGGGTGGCCCCCGGC GGCGCGCGCGC GGCCA GCGCGGGCGCC TACATTGTCTACGCC TERM 2234 2334325 - 2334294 - g 76 -14.4 -2.53263 | gap 1, opp_overlap 2334289 TGCAGGTGGAACCCA TGGCGGCTGCGCCCA CCG CGGGCGCTGC-GCCA AGGAGATCATTGAGG Rfer_2149 2332889 - 2334355 + | hypothetical protein Rfer_2150 2334377 - 2335156 + | band 7 protein TERM 2235 2335194 - 2335138 - T 85 -12.7 -3.55444 | opp_overlap 2335140 2335142, overlap 2335139 2335142 GTCTGAGCGGCCAAA GTCAGCGGCGCCTGGCTGAGCCGCTGC GCT GCATCGGCTCAGCCGGGCGAAGGCGTT TGTGGGTCCGGCAGC TERM 2236 2335193 - 2335139 - T 90 -16.2 -2.73124 | opp_overlap 2335140 2335142, overlap 2335138 2335142 TCTGAGCGGCCAAAG TCAGCGGCGCCTGGCTGAGCCGCTGC GCT GCATCGGCTCAGCCGGGCGAAGGCGT TTGTGGGTCCGGCAG TERM 2237 2335140 - 2335192 + T 100 -19.7 -3.91897 | opp_overlap 2335139 2335138 2335142, overlap 2335142 CTGAGCGGCCAAAGT CAGCGGCGCCTGGCTGAGCCGCTGC GCT GCATCGGCTCAGCCGGGCGAAGGCG TTTGTGGGTCCGGCA TERM 2238 2335142 - 2335191 + T 100 -20.7 -2.94924 | gap 1, opp_overlap 2335142 2335139 2335138, overlap 2335140 GAGCGGCCAAAGTCA G-CGGCGCCTGGCTGAGCCGCTGC GCT GCATCGGCTCAGCCGGGCGAAGGC GTTTGTGGGTCCGGC TERM 2239 2335190 - 2335142 - T 100 -18.7 -2.64472 | opp_overlap 2335140 2335142, overlap 2335139 2335138 GAGCGGCCAAAGTCA GCGGCGCCTGGCTGAGCCGCTGC GCT GCATCGGCTCAGCCGGGCGAAGG CGTTTGTGGGTCCGG Rfer_2151 2335535 - 2335176 - | antibiotic biosynthesis monooxygenase TERM 2240 2335912 - 2335942 + G 78 -2.4 -5.03314 | overlap 2335881 2335922 CACGCATTTTGCTGG TGGCCGCCACGG GCGTCTA CCTTGGCACCCA TTTTTTGACGCTGCC Rfer_2152 2335674 - 2336807 + | MscS mechanosensitive ion channel TERM 2241 2337946 - 2337966 + G 73 -10.4 -3.57144 | opp_overlap 2337945 TGACATCGACCATAT GCGCCAGG TGATC CTTGGCGC TTTGGCCATCGCCCG Rfer_2153 2336981 - 2338441 + | phospholipase D/transphosphatidylase TERM 2242 2338628 - 2338642 + G 74 -3.5 -4.82901 | overlap 2338629 GGTTTCAAGACCATA TCTCC CGCCT GGAGG TTTTTCTGACCGACG Rfer_2154 2338522 - 2338869 + | ribosomal subunit interface protein, putative Rfer_2155 2339030 - 2340070 + | HAD family hydrolase Rfer_2156 2345233 - 2340122 - | malto-oligosyltrehalose synthase TERM 2243 2341837 - 2341857 + g 77 -3.1 -5.00616 | GCCAGTCCAGCGGAA TCTCCTCGT GGA GCGCGGCGA TTTTTTCCGCCACGA TERM 2244 2342246 - 2342299 + g 100 -20.9 -3.44146 | overlap 2342256 CGCGCTGGCGATGGC CTGCGCCACGCTCGCCTGGCGCGCC GCCA GCCGCGCCAGGCGGGTCTTGAGCAG TTCCTTGTCACGCGC TERM 2245 2342256 - 2342289 + g 100 -21.7 -3.04501 | overlap 2342246 ATGGCCTGCGCCACG CTCGCCTGGCGCGCC GCCA GCCGCGCCAGGCGGG TCTTGAGCAGTTCCT Rfer_2157 2346989 - 2345226 - | malto-oligosyltrehalose trehalohydrolase TERM 2246 2346363 - 2346345 - G 100 -8.8 -5.24129 | overlap 2346346 GTTGTGGATAAAAAA GTCGCGCA CCG TGCGCGAA TCGGCACCGTCGTAG TERM 2247 2346362 - 2346346 - G 85 -12.3 -3.73995 | overlap 2346345 TTGTGGATAAAAAAG TCGCGCA CCG TGCGCGA ATCGGCACCGTCGTA TERM 2248 2346661 - 2346673 + g 78 -10.5 -3.96148 | CCGAGCGCGGCCAGC GCCGC CAG GCGGC TTTGTGCTGCGGCAA TERM 2249 2346947 - 2346991 + g 79 -7.7 -4.56597 | overlap 2346960 CGGCGCTATGCGCCA TCGGGTGTGCGAGCGCGCCAG CGT CTGGCCCGTTCTCAAGCATGA TTTTTCCAACCCCCG Rfer_2158 2349249 - 2347090 - | glycogen debranching protein GlgX TERM 2250 2347179 - 2347148 - G 72 -11.6 -3.33162 | gap 1 GATTGCAGCGGATAA CTCGCCT-GCCCCCA CGC TGGCGGCGAAGCGAG CGGCAGACCGTTGTC TERM 2251 2348171 - 2348147 - G 78 -2 -5.09225 | ATGGCATCGAAAAAA CCGCCCAGGT TCTCT ACCTCACCGG CTTCGCGCGCCAGCG Rfer_2159 2349928 - 2349236 - | TM helix protein Rfer_2160 2353307 - 2349969 - | trehalose synthase-like TERM 2252 2351877 - 2351896 + g 71 -8.5 -4.07568 | opp_overlap 2351865, overlap 2351874 GAAGCTGCGTTTGCC GCGGCCG AAGGCC CGGCTGC TTTTGCGCACGGCGA Rfer_2161 2355362 - 2353320 - | alpha amylase TERM 2253 2353850 - 2353828 - G 74 -12 -3.49777 | CCGTAGATACCATAA CTCGCCGCCA ATG TAGCGGCAAG AACCAGACGGGTCAT Rfer_2162 2357232 - 2355355 - | glycogen branching enzyme TERM 2254 2355649 - 2355636 - G 72 -2.3 -4.7629 | overlap 2355637 2355638 GCAGGAAGGCAAAAA CGCTG GTGT CAGCC GCGTCGGCCTCCACC TERM 2255 2356686 - 2356663 - G 76 -7.4 -4.43844 | gap 1, overlap 2356665 CCATGAGCCATAAAA CGGATGCTCGG TCA CCG-GCATCAG CTCAACATGGGTGAA Rfer_2163 2359577 - 2357346 - | Alpha,alpha-trehalose-phosphate synthase (UDP-forming) TERM 2256 2357798 - 2357781 - G 79 -12.7 -3.53012 | TCCGCGGCTCCTAAA GCGCGCA TTGA TGCGCGC TGCCAGGGCACGCAC TERM 2257 2358608 - 2358621 + g 72 -2.3 -4.82901 | overlap 2358599 2358598 GGTTTTCGGGTGGCA CGGCT ACGC GGTCG TTTTTGTCAACCACC TERM 2258 2359631 - 2359652 + r 79 -7.9 -4.40894 | gap 1 TTATTTTTACAGTTG GGCCAACGGG ATG CCCGC-GGCC TTTTCATCTGCTTTG Rfer_2164 2360170 - 2359622 - | MarR family transcriptional regulator TERM 2259 2360283 - 2360269 - R 74 -4.3 -4.81814 | opp_overlap 2360269 ACCAGCACAACAAAA TTGCA TTTGT TGCAA TGTATTTCAAAAAAT TERM 2260 2360368 - 2360388 + r 70 -8.9 -3.63895 | GTGATGGCCGTGTCG GTGCACGGC AAT GCCGCGTAC TTTGGCGTCATTCGG Rfer_2165 2360680 - 2360453 - | hypothetical protein TERM 2261 2360611 - 2360596 - G 100 -10.4 -6.34424 | GGCCCAAAAAAAAAA GAGCCC CAAA GGGCTC TAAACTCGTTTTGTT TERM 2262 2362234 - 2362217 - g 93 -7.7 -5.00616 | gap 1 CGCGCGCTGAAAAAA GTCGAGGC GCT GCC-CGAC ACGCAAGTGCAGGCC Rfer_2166 2360903 - 2362303 + | hypothetical protein TERM 2263 2362473 - 2362483 + G 77 -3.2 -4.87786 | GCTGGCCCTGTTTGC CTTG ACG CAGG TTTTTCTGGCCTTGC TERM 2264 2362518 - 2362544 + G 90 -5.8 -5.2015 | gap 1, overlap 2362524 GGGCCGCTACGTGGA CCGGCACGGGC TCAAGC GCCCG-GTTGG TTTTTGTGTTGTTGC Rfer_2167 2362300 - 2363511 + | major facilitator transporter Rfer_2168 2364247 - 2363564 - | hypothetical protein TERM 2265 2363613 - 2363599 - GT 71 -5.6 -4.35116 | opp_overlap 2363601, overlap 2363601 CACCCGACAGTAAAA CACGCG TGC CGCGTT CAGTACTGTGTACCG TERM 2266 2363611 - 2363601 - GT 71 -8.2 -3.77806 | opp_overlap 2363601, overlap 2363599 CCCGACAGTAAAACA CGCG TGC CGCG TTCAGTACTGTGTAC TERM 2267 2363992 - 2363973 - GT 74 -7.8 -4.09739 | gap 1, opp_overlap 2363989, overlap 2363962 2363959 TCAAGCGCGCGAAAA GCGGCCTGG CTT CC-GGCCAC CTTGAGGGTTGTGCC Rfer_2169 2365871 - 2364147 - | DEAD/DEAH box helicase-like TERM 2268 2364996 - 2365027 + gH 78 -6.4 -4.65916 | GTCGCCGCTCTTGAA GCCGGCCAGCGC CTGGGTGC GCGCCGCCTGGC TTTTGTTGCCGTGCA TERM 2269 2365154 - 2365166 + gH 83 -6.2 -4.85782 | GCTCTTGAACGATGT GCGC CAGTA GCGC TTTCTTTTTGCCGCG TERM 2270 2367120 - 2367136 + G 91 -13.7 -3.75153 | opp_overlap 2367118 2367117 CCCATGATGAAACGT CTGGCGC AGC GCGCCAG TTTGCCTTCGAACCC Rfer_2170 2366244 - 2368457 + | hypothetical protein TERM 2271 2369669 - 2369655 - g 74 -3.4 -4.8622 | GCGGGCAAGGAAAAA CCCGAC AGT GGCGAG GTCAAGATTGGCTCC TERM 2272 2369755 - 2369740 - g 84 -3.2 -5.26875 | overlap 2369741 TGTCGAACGAAAAAA CCGTCT GGGA AGACGT GTCCGGCGGGCTTGA TERM 2273 2370189 - 2370155 - g 76 -13.6 -3.01791 | overlap 2370141 2370165 ACGCCTCGGTGAAGA GGGCGCCAAACCGCAT CGC ATGCGGTTCAAAGCCC TCAAATAAGCGCTGT TERM 2274 2370179 - 2370165 - g 70 -10 -3.55548 | overlap 2370155 GAAGAGGGCGCCAAA CCGCAT CGC ATGCGG TTCAAAGCCCTCAAA Rfer_2171 2368536 - 2370197 + | putative ABC transporter ATP-binding protein TERM 2275 2370211 - 2370198 - T 74 -8.1 -3.92832 | AAAGCCCTCAAATAA GCGCT GTGA AGCGC ACCAAAAACCTCAAG TERM 2276 2370234 - 2370220 - T 74 -4.2 -4.74801 | opp_overlap 2370220 GAAGCGCACCAAAAA CCTCAA GGT TTGGGG TTTTTGGTGGCAATG TERM 2277 2370220 - 2370234 + T 78 -6.4 -4.72986 | opp_overlap 2370220 GAAGCGCACCAAAAA CCTCAA GGT TTGGGG TTTTTGGTGGCAATG Rfer_2172 2371022 - 2370222 - | UbiE/COQ5 methyltransferase TERM 2278 2371216 - 2371194 - R 88 -13.4 -3.35867 | opp_overlap 2371184 2371194 2371194 CCAAGTGGCAATCAA CTGGCTGCCA GTT TGGCTGCCAG TTGACTTAGCGCCTG TERM 2279 2371194 - 2371216 + r 87 -13.4 -3.17392 | opp_overlap 2371194, overlap 2371184 2371194 CCAAGTGGCAATCAA CTGGCTGCCA GTT TGGCTGCCAG TTGACTTAGCGCCTG Rfer_2173 2372035 - 2371190 - | hypothetical protein TERM 2280 2372065 - 2372102 + r 100 -16.5 -4.55721 | gap 1, opp_overlap 2372065, overlap 2372052 GTGCTATAAAAAAAA TAGCTGCTTA-CGCCCGT TCT ACGGGGGTTAAGCAGCTA TTTTGTCTAAAGTTT TERM 2281 2372102 - 2372065 - R 100 -16.5 -5.93809 | gap 1, opp_overlap 2372052 2372065 GTGCTATAAAAAAAA TAGCTGCTTA-CGCCCGT TCT ACGGGGGTTAAGCAGCTA TTTTGTCTAAAGTTT Rfer_2174 2373323 - 2372127 - | aromatic amino acid aminotransferase TERM 2282 2374737 - 2374727 - g 70 -4 -4.58663 | ACCATGCCGGAAAAA TTGT TGA ACAA CTGGTGCGCCCGACC TERM 2283 2375359 - 2375337 - g 79 -7.6 -4.4727 | CCAAGAGGCAGAAAA GCTGGAGCGC GAC GCGATGCAGC GTGCTCAGGTGGAAG Rfer_2175 2373430 - 2375562 + | excinuclease ABC subunit B TERM 2284 2375586 - 2375602 + F 77 -7.3 -4.30177 | overlap 2375582 GATCAGTCTAGTTAC CCGAGTA AAT TACTTGG TTTCTTGATATACTC Rfer_2176 2375664 - 2376200 + | BadM/Rrf2 family transcriptional regulator Rfer_2177 2376181 - 2377473 + | cysteine desulfurase IscS TERM 2285 2377814 - 2377801 - g 79 -8.1 -4.56597 | GGCGGCGCTTAAAAA CAGCG AAAT CGCTG AGGAATTGGCTTTGC Rfer_2178 2377529 - 2377927 + | scaffold protein TERM 2286 2377921 - 2377906 - f 70 -5.4 -4.37763 | gap 1 CTATCGAAAAAAACA CGTC-GC TGC GCTGACG AACTGAACATGGCTG Rfer_2179 2377930 - 2378253 + | iron-sulfur cluster assembly protein IscA Rfer_2180 2378250 - 2378783 + | co-chaperone Hsc20 TERM 2287 2379846 - 2379863 + G 93 -6.3 -5.52986 | CCGCATGCCACAGAT TCAGCGA GCCG TTGCTGA TTTTTTTGGTCGAGT hscA 2378809 - 2380665 + | chaperone protein HscA Rfer_2182 2380688 - 2381026 + | ferredoxin, 2Fe-2S type Rfer_2183 2381029 - 2381730 + | DNA polymerase III, epsilon subunit TERM 2288 2381888 - 2381865 - T 100 -16.8 -5.47218 | opp_overlap 2381865 TTGGATGTAAAAAAA GGACTTGGCC TTAT GGCCAAGTCC TTTTTTCTTGGGTAC TERM 2289 2381865 - 2381888 + T 100 -16.8 -5.4833 | opp_overlap 2381865 TTGGATGTAAAAAAA GGACTTGGCC TTAT GGCCAAGTCC TTTTTTCTTGGGTAC Rfer_2184 2383555 - 2381930 - | putative glutamate synthase (NADPH) small subunit Rfer_2185 2384610 - 2383618 - | thiamine pyrophosphate enzyme-like TPP-binding Rfer_2186 2385959 - 2384706 - | pyruvate flavodoxin/ferredoxin oxidoreductase-like Rfer_2187 2386539 - 2385952 - | 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate TERM 2290 2386680 - 2386670 - H 70 -3.2 -4.70659 | GCGTAGACGCAAAAA CCAG ATG CTGA CGCCGTGAAAGGTCA TERM 2291 2387207 - 2387229 + G 70 -9.8 -3.53298 | overlap 2387204 CAGTGGCTTAATGTG CTGGGCATGC CAG GCATGACCGG TTACTTTGGCCTGAT Rfer_2188 2386802 - 2387845 + | zinc-binding alcohol dehydrogenase Rfer_2189 2389144 - 2387936 - | beta-lactamase Rfer_2190 2390264 - 2389443 - | hypothetical protein TERM 2292 2390582 - 2390569 - g 74 -5.9 -4.56597 | opp_overlap 2390575 GGTTGGCGGCAAAAA CGCCA GTCT CGGCG AGATGATTTCAAACT TERM 2293 2392136 - 2392161 + G 88 -6.7 -4.96848 | GCGGTCGAATCCGTT GCCCGTGGCCA TGCC TCGCCGCGCGC TTTTTATGTGGACCG TERM 2294 2392492 - 2392471 - g 85 -6.5 -4.78149 | overlap 2392481 GGGACAAGCCAAAAA GGTGACCGA ACTG TTGGCCACC CACGGACTCAAACGC Rfer_2191 2390483 - 2392882 + | phosphoenolpyruvate synthase TERM 2295 2393090 - 2393110 + G 81 -4.5 -4.96501 | overlap 2393092 CCCTTGGGCTACTGG TTCGCGGCC CAG GGCAGCGTG TTTATTTTTATCGCC TERM 2296 2393092 - 2393108 + G 76 -9.3 -4.09508 | overlap 2393090 CTTGGGCTACTGGTT CGCGGCC CAG GGCAGCG TGTTTATTTTTATCG Rfer_2192 2392928 - 2395237 + | Na+/solute symporter TERM 2297 2395291 - 2395318 + F 81 -3.5 -5.24531 | gap 1, opp_overlap 2395296 CGAGGCTTCGCCTTA CCACACCTCA ATTAGACGC TGAGG-GTGG TTTTTTCTGCCCAAT Rfer_2193 2395358 - 2395723 + | ribosomal protein S6 Rfer_2194 2395747 - 2396046 + | putative primosomal replication protein TERM 2298 2396264 - 2396277 + G 78 -6.7 -4.59773 | TCCCGCTCGCCTGAC TGGCA CCCG TGCCA TTTTTCAGCGTCAGC Rfer_2195 2396076 - 2396360 + | ribosomal protein S18 TERM 2299 2396550 - 2396540 - g 78 -6.8 -4.66833 | GCTGAACTCGAAAAA GCTG CCG CAGC CAAATTGGCTGAATC TERM 2300 2396606 - 2396584 - g 100 -16.4 -4.07885 | opp_overlap 2396567 GACTGTTGGCGAAAA GCTTGCAGGT ACC ACCTGCAAGC TGACCCAAAAGGCCG Rfer_2196 2396372 - 2396824 + | ribosomal protein L9 TERM 2301 2396878 - 2396854 - f 74 -7.9 -4.18494 | gap 1, opp_overlap 2396854 CACTTGGAGTCAAAA GCCCTCTAGC AATCGA GC-AGAGGGC TTTTTTTTCGGTCAA TERM 2302 2396854 - 2396878 + F 100 -7.9 -5.81412 | gap 1, opp_overlap 2396854 CACTTGGAGTCAAAA GCCCTCTAGC AATCGA GC-AGAGGGC TTTTTTTTCGGTCAA TERM 2303 2397859 - 2397844 - g 70 -4.6 -4.57569 | GGACCTGCGCAAAAA GAAGCG GGGG CGCATC ATGTGACTGACAGTG Rfer_2197 2397136 - 2400045 + | ribonucleotide reductase large subunit Rfer_2198 2400522 - 2400085 - | hypothetical protein TERM 2304 2402488 - 2402500 + G 76 -9.1 -4.07568 | CAATGACGCCCCGCC CGCCA AGT TGGCG TTTTACAGCCCACCG Rfer_2199 2400791 - 2404306 + | chromosome segregation protein SMC TERM 2305 2404906 - 2404917 + G 71 -7.2 -4.19177 | GCCAGCGACCACGAT GCCC AGTT GGGC TTTGTGTTGCGCGCT Rfer_2200 2404306 - 2405358 + | hypothetical protein TERM 2306 2405337 - 2405347 + F 100 -8.2 -5.1675 | overlap 2405330 2405332 CGCCGGGTCGGCGCT GGCG CGA CGCC TTTTTTCCTGAATGC TERM 2307 2406454 - 2406479 + G 73 -9.7 -3.87373 | gap 1 GCACCGGCAAGCTCA CGCCGGTGGCCA AGC TGGC-GCCGGTG TTTGTGGGCGGTGTC TERM 2308 2407108 - 2407127 + G 76 -7.2 -4.56597 | gap 1, opp_overlap 2407096, overlap 2407107 ACATTGGCCCCATCG TG-GCGCAA AGC TTGCGCACA TTTTTCGACCAGCCG TERM 2309 2407353 - 2407342 - g 76 -5.8 -4.71426 | CGGTCAGCAAGAAAA CCAC TTTT GTGG TGGCGGGCACTGAGG Rfer_2201 2405385 - 2407457 + | DNA ligase, NAD-dependent TERM 2310 2407740 - 2407728 - g 76 -6.9 -4.46212 | overlap 2407731 2407732 GCCGCCATCAGAAAA CGACG CAA CGCCG CTGCAGGTTGAAGAC Rfer_2202 2407444 - 2408004 + | peptide deformylase Rfer_2203 2409912 - 2408035 - | DNA primase TERM 2311 2408480 - 2408508 + g 70 -4.3 -4.45517 | opp_overlap 2408442 2408440, overlap 2408482 CTGGTGGGCCGAACG CGGCCACCTGGAC GCG GACGTGGTGGCGG TTTTATAGATGATTT TERM 2312 2409708 - 2409718 + g 70 -4.6 -4.56597 | opp_overlap 2409708 CCATCAAGAAACTGA TGGC ATC GCCG TTTTTGCCACAGCCA TERM 2313 2409775 - 2409748 - G 70 -4.9 -4.45517 | gap 1, opp_overlap 2409736, overlap 2409736 AAAGCAGTGATAAAA CTGCTTGCTCGG GCTGA CCGAG-AAGGAG GGCGACTTTTCCCCG Rfer_2204 2410786 - 2410028 - | short-chain dehydrogenase/reductase SDR TERM 2314 2410175 - 2410151 - G 77 -11.3 -3.6502 | opp_overlap 2410146 CAGCCGCGAGGGAAA GGGCACGCTGG CGG CCAGCGAGTCC TGCACTTCCTGAGGC Rfer_2205 2411968 - 2410895 - | dihydroorotate dehydrogenase 2 Rfer_2206 2412015 - 2412719 + | ribose-5-phosphate isomerase A Rfer_2207 2413431 - 2412766 - | hypothetical protein TERM 2315 2413071 - 2413082 + g 71 -5.8 -4.431 | CATCGCTATCTTCGG CCGT ATTG ACGG TTTTCTCGGTGAATG Rfer_2208 2415485 - 2413446 - | oligopeptidase A TERM 2316 2413696 - 2413678 - G 78 -13.8 -3.15544 | TTGTAGCTGTAGTAA CCGGCGGC GTA GCCACCGG CAAAAATATGACTGA TERM 2317 2413929 - 2413905 - G 74 -11.4 -3.54741 | gap 1, opp_overlap 2413922 CAGCATCTTGTCAAA CAGCGCG-CGC GGCA GCGGCGCGCCG GTGTCGACATGCGCG TERM 2318 2415072 - 2415102 + g 100 -10.3 -4.84359 | overlap 2415073 GGCACCCACCAGTTC CGCGCCGCCCAGC ACAAA GTTGCGCAGCGCG TTTTTGTGGGCCTGG Rfer_2209 2416355 - 2415492 - | methenyltetrahydrofolate cyclohydrolase TERM 2319 2416410 - 2416380 - R 84 -3.2 -5.32944 | gap 1 CCTATAAGTAAAAAA GCCCG-CTAGCCC TTATCG GAACTGGGCGGGC AGCTATAAAATAAAT Rfer_2210 2417056 - 2416430 - | two component LuxR family transcriptional regulator TERM 2320 2416515 - 2416530 + g 71 -6.1 -4.32034 | overlap 2416505 TCCATGATGTTGGCG CGGTG CGCCTC CACCG TTTTGATGCTGATGC Rfer_2211 2419641 - 2417053 - | multi-sensor signal transduction histidine kinase TERM 2321 2417671 - 2417681 + g 89 -6.8 -5.0538 | ACCGGCCCGCTGCGC CTGC TTG GCAG TTTTTTCCAGTGCAC TERM 2322 2418505 - 2418491 - G 71 -7 -4.28254 | opp_overlap 2418502 GGCCAATAGGGAAAA GGCGCG GTT CGCCCC ACCAGGTCGGGTTCA TERM 2323 2418897 - 2418859 - G 82 -14.4 -3.16564 | GTCCCACGGCAGCAA GCGGGCGCCGGGCTTGCG CGG CGCAATGCTGGTGCCCGC CAGCAGGCCCCCGTT TERM 2324 2419538 - 2419551 + g 75 -8.1 -4.19238 | opp_overlap 2419487 2419538 CGTTGCGGCGCCAAA CGCTG CCAC CAGCG TTTTAACCTTGCCGG TERM 2325 2421704 - 2421727 + G 76 -5.9 -4.72272 | gap 1, overlap 2421697 GACCTGGCCTGGGCG GCCG-GCGAC ATGCA GGCGCGCGGC TTTTTGCTGGGCGGC TERM 2326 2422039 - 2422023 - g 81 -13.7 -3.32294 | opp_overlap 2422016 GCAAAGCGGGCACAA CGGCTGC CAA GCAGCCG ACGGTGCAGTTGCTG aceE 2419826 - 2422537 + | pyruvate dehydrogenase subunit E1 Rfer_2213 2422679 - 2424367 + | dihydrolipoamide acetyltransferase Rfer_2214 2424497 - 2426356 + | dihydrolipoamide dehydrogenase TERM 2327 2426375 - 2426411 + T 85 -16.1 -2.57132 | gap 1, opp_overlap 2426381, overlap 2426381 CTCGTCCCTTGCAAG GCA-AAAGCCCGAACC CTCACA GGTTCGGGCTTTCTGC ATTCTGAGGGGCAAG TERM 2328 2426381 - 2426404 + T 100 -13.9 -4.00066 | opp_overlap 2426381, overlap 2426375 CCTTGCAAGGCAAAA GCCCGAACC CTCACA GGTTCGGGC TTTCTGCATTCTGAG TERM 2329 2426404 - 2426381 - T 100 -14.6 -4.27316 | opp_overlap 2426381 2426375 CCTTGCAAGGCAAAA GCCCGAACCC TCAC AGGTTCGGGC TTTCTGCATTCTGAG Rfer_2215 2428026 - 2426491 - | hypothetical protein TERM 2330 2426858 - 2426848 - G 88 -3.2 -5.48825 | GAGCACCGAAAAAAA GCGA AAG TCAC GCATGAGCTGGGGCG Rfer_2216 2429303 - 2428035 - | hypothetical protein Rfer_2217 2431275 - 2429353 - | putative serine protein kinase, PrkA TERM 2331 2429437 - 2429451 + g 70 -5 -4.4768 | GCTGATCATCCGGTT CACGAA GTC TTTGTG TTTCTTCTGTTCGTC TERM 2332 2429646 - 2429669 + g 74 -7.4 -4.42788 | GAAAATCCTTCGGGT TCGAGATGCC GGCC GGTTTCTCGA TTTTCTCCAGTTCGC TERM 2333 2431550 - 2431529 - H 86 -7.1 -4.99035 | overlap 2431539 CCACGGATACAAAAA GGGCAGGAG AGGG CACCGGCCC CACCCTATAAAAACT TERM 2334 2433515 - 2433469 - g 76 -10.8 -3.73534 | gap 2, overlap 2433466 CAACGTGACCAACAA CGCAGCCCTGGCGCTCAGCGGC ACGCG GGCGCTGA-CGCT-GGGCGGCG GCTTCCAGCAGGGTA TERM 2335 2433731 - 2433759 + G 73 -4.4 -4.67755 | overlap 2433732 ACCAGCCATGGTGCC GCCGTCGTGGCC GGACA GGATGCGACGGG TTTTTACGTCACTGT Rfer_2218 2431652 - 2433781 + | hypothetical protein Rfer_2220 2435674 - 2434175 - | diguanylate cyclase/phosphodiesterase TERM 2336 2434785 - 2434756 - G 71 -6.3 -4.39571 | overlap 2434749 2434759 CCGACAAAGGCAAAA TCAGGCCGGTGGC CTCG GCAACCGGTATGA ACCTTGCCGGAGATA TERM 2337 2435095 - 2435079 - G 72 -2.1 -4.84359 | overlap 2435081 TCATCCGGATAAAAA GCCAGAC CCA GACTGCC GCCGGAATAGACATC Rfer_2221 2436054 - 2436479 + | hypothetical protein Rfer_2222 2436581 - 2437198 + | hypothetical protein Rfer_2223 2438445 - 2437210 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2338 2438048 - 2437991 - G 70 -3.1 -4.63486 | gap 1, opp_overlap 2438031, overlap 2438004 2438007 ACCCCGGCAACAAAA CCCGCGCCCAACATGACCACGCGCGCAC CGG GCACGAGCTTGGCCGCGATCTG-GCGGG CGTCTTCCAGGGTCC TERM 2339 2438264 - 2438281 + g 71 -6.9 -4.2828 | overlap 2438265 AGATGGTGATGCGAT TGGCGCT GGTG GGCGCCG TTTTCGTCAATAGCG Rfer_2224 2438710 - 2439189 + | transport-associated TERM 2340 2439477 - 2439464 - f 100 -4.5 -5.75945 | ACTGGCCAAAAAAAA TACGG AAAC CCGCA CATGAAGATATTTGC Rfer_2225 2439479 - 2441230 + | methyl-accepting chemotaxis sensory transducer Rfer_2226 2441884 - 2441426 - | CHRD TERM 2341 2441938 - 2441954 + r 83 -7.9 -4.63932 | overlap 2441939 CGAGTGTAGGTGGGC ACGCGCT TTG AGCGCGG TTTTGTTGGCCGATA TERM 2342 2441939 - 2441953 + r 75 -11.4 -3.37877 | overlap 2441938 GAGTGTAGGTGGGCA CGCGCT TTG AGCGCG GTTTTGTTGGCCGAT Rfer_2227 2445135 - 2442088 - | XRE family transcriptional regulator TERM 2343 2443044 - 2443022 - G 70 -4 -4.69622 | overlap 2443026 2443029 AGAGAACGGGAAAAA GAAACGATGG CCG CCGCCGGTTC GGCATTGGCGAAATA TERM 2344 2443040 - 2443026 - G 77 -3.4 -4.88293 | overlap 2443022 2443029 AACGGGAAAAAGAAA CGATGG CCG CCGCCG GTTCGGCATTGGCGA TERM 2345 2443636 - 2443581 - G 78 -14.1 -3.19523 | gap 3, opp_overlap 2443581 2443627 2443628, overlap 2443578 2443579 GACCCAAATAAAGCA GCGCCTTGGGCCACATCTTGCCGCGCTC ATA GTGCTCGGCAAGATG-GG-C-ATGGCGC TCATGCGTTTCACTT TERM 2346 2444424 - 2444404 - G 85 -12.5 -3.75169 | overlap 2444406 TACCAGCGCATGAAA CAGGCGCGC CTG GCGCGCCTC GGGAAAGTCCGCCGA TERM 2347 2444422 - 2444406 - G 90 -15.1 -3.4582 | overlap 2444404 CCAGCGCATGAAACA GGCGCGC CTG GCGCGCC TCGGGAAAGTCCGCC Rfer_2228 2445243 - 2445704 + | globin Rfer_2229 2445751 - 2446581 + | methyltransferase type 11 TERM 2348 2446682 - 2446696 + F 77 -7.2 -4.23723 | ATGTTGGGTGCGCAG CTATCA CAT TGATAG TTTTCCATCCTGTTG Rfer_2230 2446855 - 2447040 + | hypothetical protein Rfer_2232 2447502 - 2448272 + | RNA methyltransferase TrmH, group 3 Rfer_2233 2448325 - 2448684 + | hypothetical protein Rfer_2234 2449339 - 2448776 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rfer_2235 2450424 - 2449561 - | hypothetical protein TERM 2349 2449826 - 2449768 - G 78 -10.7 -3.94634 | gap 5, overlap 2449769 GATCACTTCAAACAA TTCATCGA-GCGTGCCAAAGCCGCCGG-GG AATG CCACCAG-GGCTTTGGCACGCATC-ATGA- AATGCATCTTGCGCA TERM 2350 2449826 - 2449769 - G 85 -16.7 -2.96298 | overlap 2449768 ATCACTTCAAACAAT TCATCGA-GCGTGCCAAAGCCGCCGG-GG AATG CCACCAG-GGCTTTGGCACGCATC-ATGA AATGCATCTTGCGCA Rfer_2236 2450790 - 2450485 - | hypothetical protein Rfer_2237 2451178 - 2450777 - | putative transmembrane protein TERM 2351 2450934 - 2450920 - G 78 -2.1 -5.06414 | gap 1, overlap 2450932 CTGCGGCAAGAAAAA GCAGTG CCAA CAC-GC CCACCGCGGCCAGGC Rfer_2238 2451514 - 2451203 - | protein of unknown function DUF883, ElaB TERM 2352 2451998 - 2452017 + G 70 -10.7 -3.5241 | overlap 2451996 ATGGGAGAGTTCTGG CACCCGG CATCAA CCGGGTG TGTTTGTCCAGGATG TERM 2353 2452070 - 2452100 + G 80 -14.7 -2.98381 | gap 1, overlap 2452067 TGCACTGGAGGCGTT GCGCCGCAGCGCGC CACG GC-CGCTGCAGCGC TGGTTTGATCCCTTG Rfer_2239 2451645 - 2453045 + | coenzyme F390 synthetase-like Rfer_2240 2453978 - 2453073 - | phosphoribosylpyrophosphate synthetase Rfer_2241 2455546 - 2453978 - | thymidine phosphorylase TERM 2354 2455641 - 2455627 - R 100 -10 -5.93809 | opp_overlap 2455627 CGCCCATAAAAAAAA GGCTTC CTG GAAGCC TTTTTTATGCGACCC TERM 2355 2455627 - 2455641 + r 100 -10 -5.24129 | opp_overlap 2455627 CGCCCATAAAAAAAA GGCTTC CTG GAAGCC TTTTTTATGCGACCC Rfer_2242 2456231 - 2455677 - | elongation factor P TERM 2356 2455858 - 2455877 + g 81 -5 -4.93365 | overlap 2455842 2455841 2455860 2455869 CGCACCACGTTGGTG GGCATTTC AACC GAAATGGC TTTTTCGTTGTAGAA Rfer_2243 2457469 - 2456324 - | hypothetical protein TERM 2357 2456519 - 2456505 - G 71 -7 -4.16279 | CAGATCATGTGAAAA GCCCGC AGC GAGGGC GGAGCGTCCAGCATG Rfer_2244 2457472 - 2459487 + | excinuclease ABC, C subunit Rfer_2245 2459540 - 2460106 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2358 2460493 - 2460480 - g 72 -2.3 -4.7373 | overlap 2460481 CCATGGGAGGAAAAA TTGCC GCGC GGCAG TGGGCTGGGCTGGTA Rfer_2246 2460113 - 2461015 + | hypothetical protein TERM 2359 2462055 - 2462084 + G 73 -10.7 -3.64703 | gap 1 AGAAAAAGTGCTTGA TCCTGCGAGCG-GG GCG CCACGTACGCAGGA TTTGGGTGGGACGGC Rfer_2247 2461057 - 2462142 + | tartrate dehydrogenase Rfer_2248 2462319 - 2462657 + | histone-like DNA-binding protein TERM 2360 2462781 - 2462763 - f 76 -8.8 -4.06678 | opp_overlap 2462763 ACCCACCCAGATAAA GGCGAGCA GCA TGTTCGCC TTTTTTGTTTATATT TERM 2361 2462763 - 2462781 + F 100 -11 -5.7827 | opp_overlap 2462763 ACCCACCCAGATAAA GGCGAGCA GCA TGTTCGCC TTTTTTGTTTATATT TERM 2362 2463359 - 2463369 + G 91 -5.4 -5.40072 | AGCGTCGCCGACGTG GCAT TGA ATGC TTTTTTTGAAAAACG TERM 2363 2464384 - 2464364 - g 79 -9.7 -4.20367 | overlap 2464378 CTGGCCAAGAAAGAA GGCCAGGAA AAA TTGCTGGCC TGGAAGGCTTCGCCA Rfer_2249 2462813 - 2464735 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2364 2464899 - 2464865 - T 83 -7.2 -4.56702 | opp_overlap 2464870, overlap 2464870 CCCCAAGTAAATAAA TGAAAGCCTGCTATTT AGA ACATAGCAGGCTTTTC TATTTTGGTTTTCTG TERM 2365 2464894 - 2464870 - T 91 -11.5 -4.28115 | opp_overlap 2464870, overlap 2464865 AGTAAATAAATGAAA GCCTGCTATTT AGA ACATAGCAGGC TTTTCTATTTTGGTT TERM 2366 2464870 - 2464894 + T 100 -11.5 -4.93333 | opp_overlap 2464870 2464865 AGTAAATAAATGAAA GCCTGCTATTT AGA ACATAGCAGGC TTTTCTATTTTGGTT Rfer_2250 2465773 - 2464967 - | hypothetical protein Rfer_2251 2465937 - 2465776 - | hypothetical protein Rfer_2252 2466074 - 2466889 + | putative thiol:disulfide interchange protein Rfer_2253 2467919 - 2466966 - | glycine cleavage T protein (aminomethyl transferase) TERM 2367 2467780 - 2467753 - G 70 -4 -4.72272 | gap 1, overlap 2467719 2467754 TTGGCGGAGCAAAAA GCGGCCAGTCGCG CTT CA-GACAGGCCGA GCAGTGAAAAATCCT Rfer_2254 2467957 - 2468928 + | aminodeoxychorismate lyase Rfer_2255 2468932 - 2469579 + | thymidylate kinase TERM 2368 2470402 - 2470418 + G 90 -5.7 -5.16237 | opp_overlap 2470402 TGCTGGCCGTCAAAA CTGGTGC CAC GCCCCGG TTTTTTGATGCCCTT Rfer_2256 2469576 - 2470586 + | DNA-directed DNA polymerase TERM 2369 2470900 - 2470881 - g 72 -2.8 -4.81083 | overlap 2470883 CCCAAGGACGAAAAA TCGCGCTT ACTC AAGCTCAA AATTGAAGAAATTCT Rfer_2257 2470596 - 2470958 + | type IV pilus assembly PilZ TERM 2370 2471513 - 2471494 - g 71 -7.1 -4.24726 | opp_overlap 2471495 AGAAGAAGGTGAAAA CGGCACT TTGGGC AGCGCCG GGGGTGTCTTTCATT TERM 2371 2471630 - 2471614 - g 81 -7.9 -4.59773 | opp_overlap 2471626 CCTGACTTTCAAAAA CGCCCAG GAC CTGCGCG ATGTCGCCGCCTTTG Rfer_2258 2471048 - 2471842 + | TatD-related deoxyribonuclease Rfer_2259 2471865 - 2472521 + | ankyrin Rfer_2260 2473653 - 2472676 - | hypothetical protein TERM 2372 2473934 - 2473885 - g 74 -6.4 -4.42653 | gap 3, opp_overlap 2473891, overlap 2473887 2473888 AGGCGAGTCACAAAA CAC-CCTGGCCAGCTACCGTAGCGC TTT GCGCTACTGG-GC-GGCCTGGTATG GGATTCGATACGGCC Rfer_2261 2473778 - 2474839 + | phage integrase Rfer_2262 2477738 - 2475177 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2373 2476664 - 2476652 - G 70 -3.4 -4.62069 | CCTTGATGCGAAAAA TCAG CGGTT CTGA CACGGTACCCGCAGC TERM 2374 2477021 - 2477037 + g 82 -9.5 -4.30978 | AGTCGGCCGCGCCCA GGTCAAA CCC TTTGACC TTTTGATCAGTTGCA TERM 2375 2477082 - 2477102 + g 71 -8.9 -3.794 | AAAGATCACCGGAAT GCCATTGCC TGC GGCGCTGGC TTTGATGCGTTGGCA TERM 2376 2477283 - 2477324 + g 85 -17.3 -2.87931 | overlap 2477295 GTTTTCCGGCACATC GTCCACCACCAGGAGCGAC GCCT GGCGCTCTTGCTGGTGGGC TATGTCAAAAGTGAC Rfer_2263 2480779 - 2477750 - | periplasmic sensor hybrid histidine kinase TERM 2377 2478631 - 2478668 + g 72 -12 -3.29144 | TCACCGGCATTTGCA GGTCCATCAGCACGGC ATCCAG GTCGTGCTGCTGCACC TTATCGAGCGCCTCC TERM 2378 2479746 - 2479767 + g 71 -8.7 -3.72141 | AGCTGGCCCAGCACC GCGTCCAGT CCAA ACTCGACGC TTTCAATGTCAATCT Rfer_2264 2481753 - 2480809 - | hypothetical protein TERM 2379 2483077 - 2483102 + G 73 -8.9 -3.8766 | GATTCTGGAAAATGC GGCCATGAGGG AGCG CTCGCGTGGCC TTTGATCTGATCTGC Rfer_2265 2482439 - 2483107 + | hypothetical protein TERM 2380 2483367 - 2483351 - g 73 -10.1 -3.63515 | TTCCATCCGCAAGAA CAGCGCT GCC AGCGCCG TTCCCATTCCGACCC Rfer_2266 2483257 - 2484111 + | transposase IS116/IS110/IS902 TERM 2381 2484630 - 2484592 - T 100 -16.8 -4.31692 | gap 1, overlap 2484593 AATTGACTAGCAAAA CCGGTACGGGGACAGCG CGAATT CGCTGTCCCCGT-CCGT AAGACCCAGAAACTT TERM 2382 2484629 - 2484593 - T 100 -20.3 -3.18292 | gap 1, overlap 2484592 ATTGACTAGCAAAAC CGGTACGGGGACAGCG CGAATT CGCTGTCCCCGT-CCG TAAGACCCAGAAACT Rfer_2267 2485990 - 2484644 - | acetyl-CoA hydrolase/transferase TERM 2383 2484845 - 2484884 + g 93 -15.8 -3.63515 | opp_overlap 2484829, overlap 2484848 2484849 GATCGTTCCGGCTGA GAGCGACGGCACGATTCG CGAG CCAATCGTGCCGTCCTTC TTCTTGAAAGTCGAG TERM 2384 2484848 - 2484881 + g 91 -13.9 -3.95324 | opp_overlap 2484829, overlap 2484845 2484849 CGTTCCGGCTGAGAG CGACGGCACGATTCG CGAG CCAATCGTGCCGTCC TTCTTCTTGAAAGTC TERM 2385 2484849 - 2484880 + g 85 -17.4 -2.96712 | opp_overlap 2484829, overlap 2484848 2484845 GTTCCGGCTGAGAGC GACGGCACGATTCG CGAG CCAATCGTGCCGTC CTTCTTCTTGAAAGT TERM 2386 2485939 - 2485955 + g 79 -7.9 -4.47873 | opp_overlap 2485928, overlap 2485941 CCAAGGCTGCGGCCT GGTCGGC GGA GCCGAGC TTTTGTCGGTATTGT Rfer_2268 2487913 - 2486132 - | acyl-CoA dehydrogenase-like TERM 2387 2486542 - 2486556 + g 70 -4.2 -4.56597 | overlap 2486515 CCTTGGCCACGGCAC CCTTGT CGC GCAGGG TTTTTCGGCCCACGA Rfer_2269 2489751 - 2487988 - | electron-transferring-flavoprotein dehydrogenase TERM 2388 2488174 - 2488146 - G 71 -8 -4.04319 | gap 1 TGACAAACTCATAAA CCCCG-GCCGGGC AGTA GCGCGCCTCGGGG CCGGCAAACTTGGCC TERM 2389 2489500 - 2489517 + g 100 -14.1 -4.56597 | GCCCGAGAGGATGTG GGCGCCG GGCT CGGCGCC TTTTTCCAGCACCAC Rfer_2270 2490867 - 2490133 - | two component transcriptional regulator Rfer_2271 2492894 - 2490864 - | PAS/PAC sensor hybrid histidine kinase TERM 2390 2492587 - 2492570 - G 76 -12.7 -3.31461 | opp_overlap 2492579 CACGTACCGCCAGAA TCCGGCC GTCC GGCCGGA CACGCTCGGTGTAGT Rfer_2272 2493809 - 2492961 - | 3-hydroxybutyryl-CoA dehydrogenase Rfer_2273 2495069 - 2493888 - | beta-ketothiolase TERM 2391 2494344 - 2494355 + g 84 -5.8 -5.00616 | overlap 2494340 2494351 GGCATTTCCAGCGGT GACG GTGC CGTC TTTTTTGAAGGCCGG TERM 2392 2494892 - 2494924 + g 89 -10 -4.44046 | gap 1, opp_overlap 2494913 CGTACCGCGAATCGG TCGG-AATGCAGTTG CCAA CCACTGCATTGCCGA TTTGTTTGGGGTCGA TERM 2393 2495954 - 2495933 - H 75 -12.3 -2.89742 | opp_overlap 2495931 2495927, overlap 2495923 TTGAACCGCCAGATA GCTGCCACT GGTG AGCGGCAGC AATGTGTCTCTTGGA Rfer_2275 2496363 - 2496806 + | hypothetical protein Rfer_2276 2498095 - 2497124 - | transposase, IS4 Rfer_2277 2499688 - 2498228 - | FAD dependent oxidoreductase TERM 2394 2500425 - 2500411 - g 76 -5.6 -4.59773 | overlap 2500413 GGGCATGGCGAAAAA GCCGCA TCT TGCGTC GTCAGGAACAACGAG Rfer_2278 2499928 - 2500749 + | MerR family transcriptional regulator TERM 2395 2501086 - 2501113 + F 95 -14.2 -3.41878 | opp_overlap 2501074 TGAGTCGATCTCCAA TCCCCTGCCAAG TCAA CTTAGCAGGGGA TTATCACTTGGCAGG TERM 2396 2502066 - 2502083 + F 76 -12.7 -2.74144 | overlap 2502065 GCGCGCTCCACCCAC GCCACCC GACT GGGTGGC ATTTCCCGATGACGA TERM 2397 2503453 - 2503463 + F 76 -3.2 -5.13473 | GGCACAGCGGGATAC TGGC ATC GTCA TTTTTTGGGTCTGAT TERM 2398 2505278 - 2505296 + G 88 -3 -5.5112 | overlap 2505279 TCGCCTGTCCGGGTC ACGCCGTT GCC AAGGGCGC TTTTTTGTTGCTGGC Rfer_2282 2504956 - 2505669 + | enoyl-CoA hydratase TERM 2399 2505728 - 2505677 - T 100 -13 -4.58773 | gap 1, opp_overlap 2505687 TGCACTAAACCAAAA CAAGGAGCACGCCAGGGCTGGCGAA GAC TTCGCCTACCCTGCCTTTC-CCTTG AGCGCCGTTAAGGCA TERM 2400 2505687 - 2505719 + T 83 -11.9 -3.75153 | opp_overlap 2505677 CAAAACAAGGAGCAC GCCAGGGCTGGCGAA GAC TTCGCCTACCCTGCC TTTCCCTTGAGCGCC Rfer_2283 2507394 - 2505745 - | AMP-dependent synthetase and ligase TERM 2401 2506287 - 2506298 + g 72 -2.2 -4.74103 | CCTCAGTGGACGGGA TGGG CAAA CCTA TTTTTCCATTCCAGG Rfer_2284 2508385 - 2507471 - | putative adenylate/guanylate cyclase Rfer_2285 2509498 - 2508443 - | peptidase U61, LD-carboxypeptidase A TERM 2402 2509126 - 2509110 - G 75 -7.9 -4.14739 | CCACCCACCCCAAAA CCTTCGC ACA GCGCAGG GCCCGCCCAGGTGAC Rfer_2286 2510586 - 2509495 - | CMP/dCMP deaminase, zinc-binding guaA 2512262 - 2510652 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 2403 2510971 - 2510997 + g 78 -4.3 -4.74103 | overlap 2510974 ATAAAGATGGCATCG GCACGGCGCAG CAAAT CTGCGTAGTCC TTTTTGACTTCGCCC Rfer_2288 2513755 - 2512286 - | inosine-5'-monophosphate dehydrogenase TERM 2404 2514212 - 2514195 - g 71 -8.3 -4.13421 | AAGAAAACAGAAGAA GCGCAGG CCGC CCAGCGC AAAGCAGAGCAAGAG Rfer_2289 2513886 - 2514407 + | putative transmembrane protein Rfer_2290 2514790 - 2514443 - | hypothetical protein TERM 2405 2514532 - 2514484 - G 85 -7.2 -4.82901 | opp_overlap 2514484 2514487 2514521, overlap 2514486 2514516 GTTTTTTCACAAAAA GTCCGGCGCTGCGAGCGCCCTG TCTGG CAAAGCGCTCCCGGCGCGCCAC TTTGGGGTCGACGGT TERM 2406 2514668 - 2514658 - G 71 -6.8 -4.19704 | overlap 2514667 CAAGCGCAGGGAAAA GCTG AAG CAGC CCACTGGTCTGTAAG Rfer_2291 2515223 - 2514780 - | cyclase/dehydrase Rfer_2292 2516402 - 2515353 - | biotin synthase TERM 2407 2516072 - 2516053 - G 76 -5.6 -4.67353 | gap 1, overlap 2516055 GCACCCATGCAAAAA CGGGTC-GC GCC GCTGGCCCG GGCTTCGCGCGCGGC TERM 2408 2516101 - 2516113 + g 80 -3.3 -5.09426 | GCGTCCAGCACCTGC TCCAG CTC CAGGA TTTTTTGGGCTTCAA Rfer_2293 2516645 - 2517250 + | metal dependent phosphohydrolase Rfer_2294 2518465 - 2517257 - | Cys/Met metabolism pyridoxal-phosphate-dependent enzymes Rfer_2295 2519018 - 2518494 - | phosphoribosyltransferase Rfer_2296 2520483 - 2519107 - | adenylosuccinate synthetase TERM 2409 2519464 - 2519511 + g 70 -4.8 -4.56597 | gap 2, opp_overlap 2519464 2519476, overlap 2519468 CGAACGCTTGAGTAA GGCCGCATCGAACCAGCCGCAG CGCCGA CTGCGGCCGG-T-GGTGACGCC TTTTTCAGCGCCGAC TERM 2410 2519501 - 2519476 - G 80 -14.7 -3.06133 | opp_overlap 2519468 2519464, overlap 2519464 TAAGGCCGCATCGAA CCAGCCGCAGC GCCG ACTGCGGCCGG TGGTGACGCCTTTTT TERM 2411 2520013 - 2520038 + g 74 -5.4 -4.4891 | gap 1, overlap 2520026 CGGGAACTTGAGGTC TTGCAC-GCGC AGGGC GCGCCGCGCAA TTTTGTCCTCGTAGG Rfer_2297 2521656 - 2520508 - | tRNA synthetase, class II (G, H, P and S) TERM 2412 2520851 - 2520841 - G 77 -8.2 -4.35524 | opp_overlap 2520841 CGCGTAAATTGAAAA CCGG GTG CCGG TGTAGTAGGCATAAC Rfer_2298 2521902 - 2521714 - | hypothetical protein TERM 2413 2521873 - 2521848 - G 100 -14.7 -4.82333 | overlap 2521869 ACAAGAACGGAAAAA GGCCCTCGATC ACCA GAACGAGGGCC AGGGCCAACCAGAAG Rfer_2299 2522819 - 2521920 - | HflC protein Rfer_2300 2524223 - 2522829 - | HflK protein TERM 2414 2523080 - 2523092 + g 77 -3.3 -4.88228 | overlap 2523081 ACATACGGTCGCGCG TCACC TGT GGTGC TTTTTGGTATTCCGT TERM 2415 2523814 - 2523801 - G 75 -2.3 -4.93365 | TTGCACAATGAAAAA GCCTG TTCC CAGCC AGATCAACAGTACAA TERM 2416 2523904 - 2523936 + g 76 -6.1 -4.66833 | CCAGAGCCATTGCCG CCCATGCCGCCGC CCACACT GCCGCGGATTGGG TTTTTCACATTACCA Rfer_2301 2525441 - 2524293 - | small GTP-binding protein domain-containing protein Rfer_2302 2525667 - 2525419 - | host factor Hfq Rfer_2303 2527180 - 2525837 - | small GTP-binding protein domain-containing protein TERM 2417 2527240 - 2527221 - R 71 -6.4 -4.26189 | gap 1 GCACAAATCCGAAAA CGCCACCGC TGC GCG-TGACG ACCACCAGCGTGCCC Rfer_2304 2528337 - 2527198 - | Pyrrolo-quinoline quinone TERM 2418 2527777 - 2527747 - G 86 -13.2 -3.48593 | GAGTCGTCCAGATAA GCCGGCCACCAGCG TAT CGCCAACGGCCAGC AAGACGCCCGCCTGA TERM 2419 2527919 - 2527893 - G 75 -2.1 -4.91109 | gap 1, overlap 2527894 CGGCCAGCACAAAAA CGCGCCCACCCG CCAC CAGCGGGGC-CG TAAAGCCTTGGGCCG Rfer_2305 2529056 - 2528334 - | hypothetical protein Rfer_2306 2530384 - 2529071 - | histidyl-tRNA synthetase TERM 2420 2529668 - 2529725 + g 74 -3.4 -4.8048 | gap 2, opp_overlap 2529654 2529681 2529682 2529685, overlap 2529683 ATGAGCGAGTGACGC CTCGCCCAAGTAATCCAGTGGTCTGGGT GCCG ACTC-GACCAC-GGTTTGCATCGCCGGG TTTTTGGTGTCGAGA TERM 2421 2530144 - 2530161 + g 72 -2.7 -4.85782 | GGTCCCCATTGAGGC TGTCTTC GAAG GAATACA TTTCTTTTTCGACAA ispG 2531667 - 2530393 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Rfer_2308 2532605 - 2531667 - | hypothetical protein TERM 2422 2531757 - 2531722 - G 74 -6.3 -4.54727 | gap 2 CCCGTCAAATCAAAA GGCT--TGCCACGGA CTTGGACC TCCGTGGCATCAGCC CGGCCAACCACCACC Rfer_2309 2533434 - 2532598 - | TPR repeat-containing protein Rfer_2310 2534586 - 2533438 - | hypothetical protein TERM 2423 2533859 - 2533875 + g 85 -2.2 -5.4505 | opp_overlap 2533861, overlap 2533861 TTGCAGGCGTTCAAC AACTCG GCCAG CGAGTA TTTTTTATTGAGGGG TERM 2424 2534321 - 2534310 - G 80 -3.6 -5.1356 | CCTCAGGAATAAAAA CGGC CTCA ACCG CATCGCCGCCACCGA Rfer_2311 2535093 - 2534668 - | nucleoside-diphosphate kinase TERM 2425 2535119 - 2535137 + r 73 -5.2 -4.67697 | opp_overlap 2535119, overlap 2535120 TGAATTGAAATGAGA TTGTGCCC ACC GGGCAAAG TTTATTATTTTAGCC Rfer_2312 2536552 - 2535152 - | pseudouridine synthase, Rsu Rfer_2313 2537241 - 2536549 - | putative transcriptional regulator Rfer_2314 2538375 - 2537371 - | pseudouridine synthase, RluD TERM 2426 2537523 - 2537477 - G 71 -8.2 -4.07687 | gap 3, opp_overlap 2537483, overlap 2537497 ACCGGGTGGGTAAAA GCCAGACGGCAAGCATGCAA-GG CCTG CCGTTGCATACCCGCC-TC-GGC ACGCCCCCCATAAAG TERM 2427 2537983 - 2538016 + g 71 -8.7 -3.72324 | gap 1, opp_overlap 2538003 TGTTCCGCTCCAGTT GCCGG-GGGCGGGGTG AAC CACCAGACCCGCCGGC TTGTTGATCACCATC Rfer_2315 2538396 - 2539202 + | putative transmembrane protein Rfer_2316 2541177 - 2539165 - | helicase c2 TERM 2428 2540127 - 2540102 - G 83 -2.5 -5.24129 | overlap 2540103 TCGTCTGAGAAAAAA GCAAGCCTCTC GATA AAAACGCTCGC TCTTTCACGCAAACG TERM 2429 2540584 - 2540564 - G 83 -4.8 -5.0917 | gap 1, overlap 2540565 2540566 2540580 TCAGCAAAAAATAAA TGGTGGTTG ATGA CAACCAC-A TCGGCGGCCAGAGCT Rfer_2317 2541381 - 2542142 + | protein serine/threonine phosphatases Rfer_2318 2543289 - 2542192 - | AFG1-like ATPase TERM 2430 2542455 - 2542443 - G 73 -4.8 -4.67982 | CGTCACTCAATAAAA CGGT GTGAA ACCG GCTGGCAATCTCCAA Rfer_2319 2544797 - 2543370 - | dihydrolipoamide dehydrogenase TERM 2431 2544651 - 2544682 + g 73 -9.3 -3.93148 | opp_overlap 2544639 2544637, overlap 2544663 ACAGCCCGTGTTGGT GCAGGTGCCGCCC AGCGCC GGGCCGCCCTTGC TGTTTTTCCACTCAT TERM 2432 2544865 - 2544824 - R 71 -6.4 -4.27316 | gap 1 TCTTTGAATTGAAAA CCCACCGGATTCGG-GCAC ATGAA GTGCGCCGCTGCGGGTGGG TCGAACCAGATGGCT Rfer_2320 2546142 - 2544880 - | dihydrolipoamide acetyltransferase kgd 2549051 - 2546160 - | alpha-ketoglutarate decarboxylase TERM 2433 2546197 - 2546213 + g 72 -2.2 -4.78107 | opp_overlap 2546210 TTGAGCTTGGCGAAT GCGC CTTCAACCA GCGC TTTTTGCTGCTCCTG TERM 2434 2546252 - 2546288 + g 70 -3.6 -4.59773 | gap 2, opp_overlap 2546249 2546245, overlap 2546252 2546253 GCGCATAACCCACGG C-GGGCGATGC-GGACGC CGC GCGGCCCGAATAGCCCCG TTTTTGCCCGTCAAA TERM 2435 2546337 - 2546349 + g 76 -9.1 -4.12188 | opp_overlap 2546337 ATGCTGCACAAAAAA CCAGG CGC CCTGG TTTTGCGGCTCATCC TERM 2436 2546349 - 2546337 - G 100 -9.1 -5.24531 | opp_overlap 2546337 ATGCTGCACAAAAAA CCAGG CGC CCTGG TTTTGCGGCTCATCC Rfer_2322 2551141 - 2549246 - | propionyl-CoA synthetase TERM 2437 2549344 - 2549370 + g 71 -7.8 -4.07568 | opp_overlap 2549333 AAACCGCCTGCACGG CCCGGCGCAGCA GCT TGCCGCTACGGG TTTTGGGCAGCACCG TERM 2438 2550737 - 2550727 - G 70 -3.2 -4.60924 | CAAAGCCGCCAAAAA CCAC CGA GTGA ATCGCACCTATGCGC Rfer_2323 2551998 - 2551396 - | isochorismatase hydrolase TERM 2439 2551799 - 2551819 + g 76 -9.6 -4.08692 | overlap 2551800 AAGGTCTGCGCGCAC AGCGCCCG CAATT CGGGCGCG TTTTCGCCCAACTTG TERM 2440 2551800 - 2551818 + g 72 -13.1 -3.04894 | overlap 2551799 AGGTCTGCGCGCACA GCGCCCG CAATT CGGGCGC GTTTTCGCCCAACTT TERM 2441 2552405 - 2552417 + G 71 -6.9 -4.26076 | opp_overlap 2552405 TCTGCGGTGTCAACA CCGGT CTG GCCGG TTTTGGTGCGGCTGA Rfer_2324 2552272 - 2553306 + | extracellular solute-binding protein TERM 2442 2553328 - 2553367 + F 100 -9.3 -4.84761 | opp_overlap 2553326 2553327, overlap 2553326 2553329 ACCCGAGTACTAACC G-GCGCCGCCTGATTTCGC CTGA GCGAT-TCACGCGGCGCTC TTTTTATGACGCTCT TERM 2443 2553329 - 2553365 + F 93 -13 -4.04397 | gap 1, opp_overlap 2553326 2553327, overlap 2553326 2553328 CCCGAGTACTAACCG GCGCCGCCTGATTTCGC CTGA GCGAT-TCACGCGGCGC TCTTTTTATGACGCT TERM 2444 2553482 - 2553501 + G 79 -12.2 -3.56092 | opp_overlap 2553468, overlap 2553470 CTGGTCCTGGCGCAG TCAGGCCT TTCG AGGCCTGA TTTACCAGGTCATCG Rfer_2325 2553435 - 2554610 + | amino acid ABC transporter permease TERM 2445 2555023 - 2555033 + G 70 -3.2 -4.7173 | overlap 2555019 TGCTGTGGGTGGTCG TGCT GGC GGCA TTTTTCACTCTGATG Rfer_2326 2554626 - 2555729 + | amino acid ABC transporter permease Rfer_2327 2555757 - 2556515 + | ABC transporter related Rfer_2328 2557690 - 2556650 - | AraC family transcriptional regulator Rfer_2329 2559076 - 2557778 - | hydroxypyruvate reductase TERM 2446 2559015 - 2558981 - G 76 -7.1 -4.56597 | gap 1, overlap 2558983 CTGTGCTGGCAAAAA TAGCGGCAGGCACAGC GCCG GCTGCGC-TGACGCAA CGGCTGCGTCGAACA TERM 2447 2559013 - 2558983 - G 73 -9.7 -3.90048 | gap 1, overlap 2558981 GTGCTGGCAAAAATA GCGGCAGGCACAGC GCCG GCTGCGC-TGACGC AACGGCTGCGTCGAA Rfer_2330 2559978 - 2559166 - | hypothetical protein Rfer_2331 2561235 - 2560243 - | lipolytic enzyme, G-D-S-L TERM 2448 2562727 - 2562695 - g 80 -14.7 -2.9914 | overlap 2562697 GACGGCCGACACACA CACCGCGCGGCACGC CCT GCGCGAGGCGCGGCG CCTGCTGGCAACCCA TERM 2449 2562725 - 2562697 - g 76 -13.7 -3.05022 | overlap 2562695 CGGCCGACACACACA CCGCGCGGCACGC CCT GCGCGAGGCGCGG CGCCTGCTGGCAACC TERM 2450 2563089 - 2563069 - g 76 -8.9 -4.08767 | GGCAGCGCCTCAAAA CGGCAGTGG CCG CCACCGTCG CTGCACACGGCGGCA Rfer_2332 2561655 - 2563271 + | FAD linked oxidase-like TERM 2451 2563305 - 2563286 - g 74 -11.4 -3.52668 | overlap 2563273 AACGCAGGCACAGAA CGCGCCAA AGGC CTGGCGCG GCTCGACGCCCCCAC Rfer_2333 2563259 - 2564899 + | FAD dependent oxidoreductase Rfer_2334 2564906 - 2566465 + | carbohydrate kinase, FGGY Rfer_2335 2567934 - 2566510 - | FAD linked oxidase-like TERM 2452 2566539 - 2566563 + g 88 -3.5 -5.45652 | opp_overlap 2566546, overlap 2566530 2566541 GAATATTCTGATTCA TGCGAAACAGA TTA TCTGGGTCGTA TTTTTTCTTCGCGCT Rfer_2337 2568727 - 2570274 + | diguanylate cyclase with PAS/PAC sensor TERM 2453 2571389 - 2571371 - g 71 -7.4 -4.21908 | overlap 2571385 GACCAGCATCGAAAA GTCACTGC GCA ACAGCGAC AAAGACGCCAGCTAC Rfer_2338 2570346 - 2571695 + | hypothetical protein Rfer_2339 2572553 - 2571696 - | extradiol ring-cleavage dioxygenase III subunit B TERM 2454 2572395 - 2572370 - G 85 -8.9 -4.6645 | overlap 2572373 CAGAGATACACAAAA TGAGCTGTGGC ATGG GCCACTGCGCA CCAAATTTGGCCCCC TERM 2455 2572472 - 2572498 + g 85 -2.4 -5.40474 | overlap 2572475 TGGGGCTGCCATGGC CCAGAAAAAT AACCGGC ATTTTTCTCG TTTTTTTCAGCGCCT TERM 2456 2573734 - 2573756 + G 76 -5.5 -4.60255 | opp_overlap 2573734, overlap 2573737 CATGGACGCCAACTA CTACCTGGA AACCA TCCGGGTCG TTTTTCAGGAGTTCT Rfer_2340 2572796 - 2574193 + | polyhydroxyalkanoate depolymerase, intracellular TERM 2457 2574335 - 2574316 - g 72 -11.4 -3.39895 | GCGGGCATCAACCAA TGCCCGCC CGGC GGCGAGCA AGGCATTGCATGGCT Rfer_2341 2574193 - 2574891 + | electron transport complex, RnfABCDGE type, B subunit Rfer_2342 2576414 - 2574888 - | methyl-accepting chemotaxis sensory transducer TERM 2458 2576164 - 2576128 - G 76 -10.1 -3.79071 | overlap 2576134 GGCACAACATTCAAA CGCAAATCACCGCGCAA CAT CTGCGCCATGGCTTGCG CCACCTGCGCCAGGT TERM 2459 2576522 - 2576505 - R 84 -6.3 -5.02074 | gap 1, overlap 2576507 2576510 2576511 TTACCCCCTAAAAAA CAGAACGC CCC GCGTTC-G CTAACGAATGCGGGG TERM 2460 2576521 - 2576507 - R 83 -10 -4.13963 | overlap 2576505 2576510 2576511 ACCCCCTAAAAAACA GAACGC CCC GCGTTC GCTAACGAATGCGGG TERM 2461 2576539 - 2576510 - R 100 -13.5 -4.18465 | overlap 2576507 2576505 2576511 CCCTAAAAAACAGAA CGCCCCGCGTTCG CTAA CGAATGCGGGGCT AAAAAGCTTGCCAAC TERM 2462 2576538 - 2576511 - R 100 -17 -3.09995 | overlap 2576507 2576505 2576510 CCTAAAAAACAGAAC GCCCCGCGTTCG CTAA CGAATGCGGGGC TAAAAAGCTTGCCAA Rfer_2343 2576921 - 2576607 - | transport-associated Rfer_2344 2577565 - 2577161 - | hypothetical protein TERM 2463 2577742 - 2577708 - H 100 -18.1 -3.66999 | gap 1, opp_overlap 2577708, overlap 2577714 ACGCACGCACCCAAA CCAAAAGCCCGTATGC ATCC GCA-ACGGGCTTTTGG TTTTTTTACCCCGGC TERM 2464 2577708 - 2577742 + H 100 -18.1 -5.40072 | gap 1, opp_overlap 2577708 2577714 ACGCACGCACCCAAA CCAAAAGCCCGTATGC ATCC GCA-ACGGGCTTTTGG TTTTTTTACCCCGGC TERM 2465 2577736 - 2577714 - H 91 -9.9 -4.56914 | gap 1, opp_overlap 2577708, overlap 2577708 GCACCCAAACCAAAA GCCCGTATGC ATCC GCA-ACGGGC TTTTGGTTTTTTTAC Rfer_2345 2577798 - 2579336 + | 2-isopropylmalate synthase TERM 2466 2579380 - 2579407 + F 100 -5 -5.64421 | gap 1, overlap 2579373 TAATTGTTTAAGAAA GTCGTGCAAGTAT TTG ATA-TTGTGCGAC TTTTTTGTTTAAACT TERM 2467 2579450 - 2579464 + F 75 -5.7 -4.59853 | AAATAGGTCTGGAAT TGGGT GCAAA ACCCA TTTTTGACGGATTCC Rfer_2346 2579493 - 2580533 + | Serine-type D-Ala-D-Ala carboxypeptidase Rfer_2347 2581336 - 2580545 - | IclR family transcriptional regulator Rfer_2348 2582177 - 2581416 - | arginyl-tRNA-protein transferase aat 2582952 - 2582188 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 2468 2583124 - 2583095 - R 100 -12.2 -5.28683 | opp_overlap 2583096, overlap 2583096 ACCAATATTAAAAAA GGGGTTAGCAGG GTTTTA CCTGCTAACCCT TTTCAATTTGTTGCT TERM 2469 2583123 - 2583096 - R 100 -15.7 -3.75583 | opp_overlap 2583096, overlap 2583095 CCAATATTAAAAAAG GGGTTAGCAGG GTTTTA CCTGCTAACCC TTTTCAATTTGTTGC TERM 2470 2583096 - 2583123 + r 100 -15.7 -4.42851 | opp_overlap 2583095 2583096 CCAATATTAAAAAAG GGGTTAGCAGG GTTTTA CCTGCTAACCC TTTTCAATTTGTTGC Rfer_2350 2584691 - 2583144 - | methyl-accepting chemotaxis sensory transducer TERM 2471 2585474 - 2585450 - g 82 -12.1 -3.66732 | CAAGGACTTGAAGAA CGGCTTGAGCG CGC CGCCCAAGCTG ACACTGCCCAACATC Rfer_2351 2584935 - 2586092 + | L-lactate dehydrogenase (cytochrome) Rfer_2352 2588771 - 2586093 - | GCN5-related N-acetyltransferase TERM 2472 2586328 - 2586312 - G 75 -2.2 -4.95484 | overlap 2586313 CACCACCAAAGAAAA TTCGCA GGTGG TGCGAT CCGGGTTGGTGATGT TERM 2473 2588425 - 2588437 + g 70 -3.3 -4.65916 | opp_overlap 2588416, overlap 2588417 2588416 AACAGATGCATGCCG TCACG GCG CGCGA TTTTGTTCAGCTCGG TERM 2474 2589436 - 2589415 - g 89 -10.9 -4.15044 | gap 1, overlap 2589416 GTGGCGCCCAACAAA CTGCTGGCCA AAA TGGCCAGC-G AATTCAACAAGCCCA Rfer_2353 2588872 - 2590113 + | DNA-directed DNA polymerase TERM 2475 2590233 - 2590264 + G 84 -10.2 -4.20367 | gap 1, overlap 2590236 TCCGTTTTCGAATGT TAGGTGCCATTGCCA TGG TGGCCATGGC-CCTG TTGTTTATTGGCGCG TERM 2476 2590236 - 2590262 + G 73 -10.8 -3.69841 | overlap 2590233 GTTTTCGAATGTTAG GTGCCATTGCCA TGG TGGCCATGGCCC TGTTGTTTATTGGCG TERM 2477 2591301 - 2591277 - g 85 -3.5 -5.42259 | opp_overlap 2591284 CGAGCTCCAAAAAAA TCAGCGACATC ATC GGTGTCATTGA CGGCATCGCCTTCCA Rfer_2354 2590184 - 2591848 + | methyl-accepting chemotaxis sensory transducer TERM 2478 2591968 - 2592001 + G 74 -3.7 -4.8667 | gap 1, overlap 2591969 TATCGTCGGCATCGG TGCCTCGGCCGGCGGC CTG GCCGC-GATTGAAGCG TTTTTCTCGGGTATG TERM 2479 2593250 - 2593270 + G 76 -6.7 -4.57569 | overlap 2593252 CTCTTCCATTACGCT CTGCAACCC GGT GGGGTGCTG TTTTTGGGCACCTCG TERM 2480 2593290 - 2593308 + G 79 -8 -4.44448 | overlap 2593292 TGGGCACCTCGGAGA CGGCTGGC GAG GCCGGCGG TTTGTTTGCCGTGCT TERM 2481 2593380 - 2593393 + G 73 -4.5 -4.58283 | gap 1, overlap 2593369 2593368 AAGGGGCGCAGCGCG CC-GCC CTG GGCCGG TTTTTGCCACCCTTG TERM 2482 2593767 - 2593801 + G 78 -5 -4.78107 | gap 3, overlap 2593768 2593769 GCATTTGCCCGGTGG C-G-GGCGGC-CCGGCG GCAG CGCTGGAGTCGCCTCTG TTTTTGGTGATGCTG TERM 2483 2593768 - 2593799 + G 76 -8.7 -4.00443 | gap 2, overlap 2593767 2593769 CATTTGCCCGGTGGC G-GGCGGC-CCGGCG GCAG CGCTGGAGTCGCCTC TGTTTTTGGTGATGC TERM 2484 2593769 - 2593797 + G 82 -12.4 -3.58504 | gap 1, overlap 2593768 2593767 ATTTGCCCGGTGGCG GGCGGC-CCGGCG GCAG CGCTGGAGTCGCC TCTGTTTTTGGTGAT TERM 2485 2593833 - 2593823 - g 70 -3.2 -4.58395 | GTGATGCTGGAAAAA GCAC CCG ATGC CAACGCCGCTGAGTC Rfer_2355 2591885 - 2594911 + | MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor TERM 2486 2595314 - 2595288 - g 85 -13.1 -3.70773 | GGGGAGATGCAACAA CTGATGCACGA GCTGG CCGTGCATCAG ATCGAGCTGGAGATG TERM 2487 2595502 - 2595525 + G 76 -12.5 -3.32844 | overlap 2595506 CGCGCAGCGCGCTGG TGAAGCGGC CGATCA GCCGCTTCA TTGTCAAGTCGCAGC TERM 2488 2596825 - 2596838 + G 75 -8.1 -4.2123 | opp_overlap 2596821 ACGACATTCAAGCTG GCCTG GCGG CAGGC TTTCTTCGCTACCTG Rfer_2356 2595120 - 2596928 + | PAS/PAC sensor hybrid histidine kinase TERM 2489 2597225 - 2597240 + G 85 -4 -5.44119 | gap 1 AAGCCGCGCGGCTGG CCG-GAT GTG ATCACGG TTTTTTTGAAGTCCC Rfer_2357 2596949 - 2597389 + | CheB methylesterase TERM 2490 2597424 - 2597372 - T 83 -7.7 -4.58663 | gap 4 ACCATCGCGCAAAAA CCCGGGCACGAGGCCTGAGAGCCACGG ACA CCG-GGCCC-C-GGCCAC-TGCCTGAG CACCACCAACGCAGG Rfer_2358 2598284 - 2597466 - | metallophosphoesterase Rfer_2359 2599312 - 2598281 - | diacylglycerol kinase Rfer_2360 2599641 - 2599339 - | hypothetical protein Rfer_2361 2600058 - 2599666 - | cupin 2 protein TERM 2491 2601661 - 2601671 + G 71 -6.8 -4.16842 | GTGGGTTTGGGTTTT GCCA TGC TGGC TTTGTTCGGCCTGGC Rfer_2362 2600461 - 2602035 + | cytochrome bd ubiquinol oxidase, subunit I TERM 2492 2602419 - 2602442 + G 73 -4.5 -4.62336 | overlap 2602421 2602427 2602432 ACTGGGGCCTGTTTG TGGGCGGTG CGGTGC CGCCGCTTA TTTTTGGGGTGGCCT TERM 2493 2602427 - 2602439 + G 74 -6.9 -4.42748 | overlap 2602421 2602419 2602432 CTGTTTGTGGGCGGT GCGGT GCC GCCGC TTATTTTTGGGGTGG Rfer_2363 2602046 - 2603182 + | cytochrome d ubiquinol oxidase, subunit II Rfer_2364 2603197 - 2603313 + | Cyd operon protein YbgT fumC 2604777 - 2603365 - | fumarate hydratase TERM 2494 2604702 - 2604648 - G 73 -13.5 -2.71364 | gap 2, opp_overlap 2604649, overlap 2604685 CCAGCGCGTGAATCA CCGGCA-GCGGCATGCGCTGCT-CGCC AAT GGCGAAGAAGCGCAGGCTGCGCGCCGT CTGTGCGCCCCACAA TERM 2495 2604649 - 2604701 + g 85 -17 -2.87132 | gap 2, opp_overlap 2604648 2604685 CAGCGCGTGAATCAC CGGC-AGCGGCATGCGCTGCT-CGCC AAT GGCGAAGAAGCGCAGGCTGCGCGCCG TCTGTGCGCCCCACA Rfer_2366 2607745 - 2604809 - | aconitate hydratase TERM 2496 2606333 - 2606318 - G 80 -11.8 -3.75332 | opp_overlap 2606316 2606305 ATGGCCCAAGGTAAA CCCGGC TTTT GCCGGG GCCTTGATGTCGCAC TERM 2497 2607667 - 2607684 + g 79 -9.1 -4.14472 | GCGAATAGAATTTTC CCGCCTT GCCG GAGGCGG TTTTGAAGGTCTTGA Rfer_2367 2608471 - 2607911 - | hypothetical protein Rfer_2368 2608721 - 2609272 + | NADPH-dependent FMN reductase Rfer_2369 2609361 - 2609717 + | hypothetical protein queF 2610661 - 2609792 - | 7-cyano-7-deazaguanine reductase Rfer_2371 2611626 - 2610703 - | alpha/beta hydrolase Rfer_2372 2612455 - 2611676 - | hypothetical protein TERM 2498 2612513 - 2612497 - R 100 -8.7 -5.27476 | opp_overlap 2612497 GTTAAGAAAAGAAAA GGCTTCA TGA CGAAGCC TTGATTATCGTGACA Rfer_2373 2613132 - 2612542 - | hypothetical protein TERM 2499 2613213 - 2613198 - R 100 -10.4 -4.69464 | opp_overlap 2613196 AAAACAGCCCAAAAA GCACGC CGAA GCGTGC AATCATTTGGTCTAT Rfer_2374 2614708 - 2613308 - | putative ferredoxin TERM 2500 2613549 - 2613531 - G 71 -5.8 -4.34402 | overlap 2613533 TTCTTGACACCAAAA GTGCCGGC ATG GCCGGAGC AACGCTCAAAGGTGT TERM 2501 2614120 - 2614148 + g 74 -3.1 -4.82901 | gap 1, opp_overlap 2614119 2614118, overlap 2614120 2614121 TGCCCGAGCGAAATC T-CCTGGTCGCC AGCGAG GGCAGCCAGGCA TTTTTATCGACGCCC TERM 2502 2614568 - 2614555 - G 72 -2.3 -4.84527 | GGCAGATATCAAAAA TGCGC TCCA GCTCA TGGAAAGTCGCCTCT Rfer_2375 2615174 - 2614752 - | rubrerythrin TERM 2503 2615108 - 2615139 + g 71 -9.4 -3.71517 | overlap 2615118 AATAACGGCGGTTGG CCTGGGACTCGCCT GCGA AGGCGGCTTTCAGG TTGTCTTCCGTCTTG TERM 2504 2617336 - 2617351 + G 74 -11.8 -3.53811 | opp_overlap 2617320 CGAGAAAGAATTTCC GGCCGG CATC CCGGCC TTTGGCGCCGATGCG TERM 2505 2617778 - 2617756 - g 78 -9.9 -3.86975 | gap 1, opp_overlap 2617771 ACAAGGCAAAGACAA CCAGGACCCG CAGA CGGGTC-TGG CGCAACAGCGTGCCA TERM 2506 2617922 - 2617883 - g 81 -8.4 -4.62783 | gap 1, opp_overlap 2617877, overlap 2617884 2617885 GAGCTATGGCAAAAA GTGGCACCG-GTCGCCGGC CGG GCCGGCGAATCGGTGTCGA TCGCGGTTTACCCTC TERM 2507 2617921 - 2617884 - g 72 -11.9 -3.37188 | gap 1, opp_overlap 2617877, overlap 2617883 2617885 AGCTATGGCAAAAAG TGGCACCG-GTCGCCGGC CGG GCCGGCGAATCGGTGTCG ATCGCGGTTTACCCT TERM 2508 2617920 - 2617885 - g 78 -15.4 -2.61831 | gap 1, opp_overlap 2617877, overlap 2617884 2617883 GCTATGGCAAAAAGT GGCACCG-GTCGCCGGC CGG GCCGGCGAATCGGTGTC GATCGCGGTTTACCC Rfer_2376 2615474 - 2618446 + | valyl-tRNA synthetase Rfer_2377 2618709 - 2618482 - | SirA-like cysM 2619655 - 2618753 - | cysteine synthase B TERM 2509 2619562 - 2619578 + g 78 -4.3 -4.77165 | opp_overlap 2619562 2619564, overlap 2619564 GTTTGCCCAAAATCA CATTGCC ACG GGCAGCG TTTTCTTGTGCACCG TERM 2510 2619807 - 2619832 + r 100 -11.9 -5.60689 | gap 1, opp_overlap 2619807 CAGACAGTATCAGAA CCCGCT-TGGCC TAT GGCTACAGCGGG TTTTTTGTTGTCTCA TERM 2511 2619832 - 2619807 - R 71 -9.7 -3.46563 | gap 1, opp_overlap 2619807 CAGACAGTATCAGAA CCCGCT-TGGCC TAT GGCTACAGCGGG TTTTTTGTTGTCTCA Rfer_2379 2620237 - 2619845 - | glutaredoxin family protein Rfer_2380 2620344 - 2621378 + | isocitrate dehydrogenase (NAD+) aroD 2622205 - 2621411 - | 3-dehydroquinate dehydratase TERM 2512 2621951 - 2621980 + g 71 -5.7 -4.38116 | gap 1 CTCCATGACCGAGCG GCGGGTGA-ATAGC AAC GGAATATCACCCGC TTTGCTTTTTATGGC TERM 2513 2622256 - 2622228 - R 100 -5.9 -5.7946 | TCCTCAATAAAAAAA CCTGCCAGCGC AACAGGA ACACAGGCAGG AACTTATACGTCATA Rfer_2382 2623306 - 2622437 - | 4-hydroxybenzoyl-CoA thioesterase Rfer_2383 2624282 - 2623299 - | Alpha/beta hydrolase fold-3 TERM 2514 2623636 - 2623626 - G 71 -5.4 -4.34482 | opp_overlap 2623626 GTGGTCAAAAAAATA CTCA ATG TGAG GTTCTTCGAGCATAA Rfer_2384 2626217 - 2624361 - | acyl-CoA dehydrogenase-like TERM 2515 2624603 - 2624643 + g 86 -18.2 -2.90212 | CCGCGTTGGCCAGGG CGTCACCCGGCTGGCCAG TGGCC CAGGCCGCCCGGGTGGCG TCTGTGACCTGCTGC TERM 2516 2625167 - 2625184 + g 71 -6.9 -4.15565 | overlap 2625168 CGGCGGGCCCCGCCG GCCGACC CTGG GGTCGGG TTTTGGCATAGTCCA TERM 2517 2626269 - 2626239 - R 100 -5.2 -5.93809 | CTCCCATAAAAAAAA GGCCGGGCCGCTCC ATT GATTCAGCCCAACC CTTGTTCATCACGCC Rfer_2385 2627514 - 2626300 - | acetyl-CoA acetyltransferase TERM 2518 2626828 - 2626845 + g 84 -3.3 -5.1861 | CGCGCGAATGCCTTC GTCCTGG CTGA CCGTGAC TTTTTTGGTCGTCAG Rfer_2386 2629645 - 2627546 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding Rfer_2387 2630446 - 2629751 - | ABC transporter related Rfer_2388 2631219 - 2630440 - | ABC transporter related Rfer_2389 2632505 - 2631216 - | inner-membrane translocator Rfer_2390 2633456 - 2632509 - | inner-membrane translocator TERM 2519 2633541 - 2633524 - R 100 -5.5 -6.53504 | overlap 2633527 GATACAAAAAAAAAA CCGGC CATCAAGC GCCGG CAATGAACGCCAAGG Rfer_2391 2634832 - 2633597 - | extracellular ligand-binding receptor TERM 2520 2633662 - 2633682 + g 90 -5.4 -5.26918 | gap 1 CCTCAATGTATTTGA CCGGC-GCA AAGG TGTAGCCGG TTTTTTCTGCACTAT Rfer_2392 2636119 - 2634884 - | extracellular ligand-binding receptor TERM 2521 2635497 - 2635509 + g 71 -7.7 -4.13767 | opp_overlap 2635486 CCAATCGGAGTCAGA TCGTC GCC GACGA TTTTCACATCGGGGC TERM 2522 2635967 - 2635982 + g 76 -9 -4.08692 | overlap 2635954 CTCTGCCACAAATTG CCAGCT TTTG AGCTGG TTTTGACCCACATTG Rfer_2393 2637868 - 2636240 - | acyl-CoA synthetase TERM 2523 2637948 - 2637974 + H 89 -13.8 -3.74693 | overlap 2637950 2637951 AACGCCGTGACGCCA TGTGAAGCTGGC ATT GCCAGCTTCGTA TTTCATAGCATCCAC TERM 2524 2637950 - 2637972 + H 95 -14.2 -3.4582 | overlap 2637948 2637951 CGCCGTGACGCCATG TGAAGCTGGC ATT GCCAGCTTCG TATTTCATAGCATCC TERM 2525 2637951 - 2637971 + H 85 -15.5 -2.67171 | overlap 2637950 2637948 GCCGTGACGCCATGT GAAGCTGGC ATT GCCAGCTTC GTATTTCATAGCATC TERM 2526 2638057 - 2638038 - g 75 -8.6 -4.21275 | opp_overlap 2638038 CGAATGTATGCAAAA CTTGTCAC GTAC GCGACAAG TTGTCATTGAGCTGA Rfer_2394 2638030 - 2638797 + | Crp/FNR family transcriptional regulator TERM 2527 2640257 - 2640243 - g 73 -4.3 -4.70319 | GCAGCAAAACTAAAA GACTT TTCTC AAGTC GAAACCTTGCTGATG Rfer_2395 2638881 - 2640371 + | hypothetical protein Rfer_2396 2640437 - 2640859 + | protein-methionine-S-oxide reductase Rfer_2397 2640843 - 2641382 + | intracellular septation protein A Rfer_2398 2641406 - 2641699 + | BolA-like protein TERM 2528 2642242 - 2642230 - g 73 -4.8 -4.64657 | overlap 2642239 CGAAATCGCCAAAAA GTCC AGCAA GGAC CCGGGCTCCGGTGCC TERM 2529 2642437 - 2642423 - g 71 -7.2 -4.14392 | GCCCAACTGCCAAAA TTTGAC GAT GTCAAA CCGCAAATTGCACAA Rfer_2399 2641733 - 2642518 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2530 2642562 - 2642539 - T 83 -9.6 -4.17023 | opp_overlap 2642544, overlap 2642544 GCAAGCACCTTAAAA GAAAAGCGGC CGAG GCCGCTTTTT TTACGGCCAATGGGG TERM 2531 2642544 - 2642557 + T 100 -9.5 -5.40072 | opp_overlap 2642539 2642544 CACCTTAAAAGAAAA GCGGC CGAG GCCGC TTTTTTTACGGCCAA TERM 2532 2642557 - 2642544 - T 100 -9.5 -5.09259 | opp_overlap 2642544, overlap 2642539 CACCTTAAAAGAAAA GCGGC CGAG GCCGC TTTTTTTACGGCCAA Rfer_2400 2644269 - 2642854 - | periplasmic sensor signal transduction histidine kinase Rfer_2401 2644939 - 2644256 - | two component transcriptional regulator Rfer_2402 2644952 - 2646049 + | hypothetical protein TERM 2533 2646399 - 2646419 + G 70 -3.3 -4.72272 | overlap 2646401 CGGAACGCCTGGAGG TTTTGGC TGACAAC GCCAAGA TTTTTGCTGCGCAGG TERM 2534 2646629 - 2646618 - g 71 -7.2 -4.18197 | AGCTGGCACTTAAAA CCGG TCGG CCGG TGGGCGGCGTGAAGC Rfer_2403 2646095 - 2647099 + | malate dehydrogenase TERM 2535 2647094 - 2647124 + T 83 -9.7 -4.19704 | gap 1 CTACCCGAGCTGTTT GGCTGA-GCCGCCA GATG TCGCGGCGTCGGCC TTTTCGATCAGCTTG Rfer_2404 2647684 - 2647079 - | hypothetical protein TERM 2536 2647364 - 2647346 - G 93 -11.6 -4.36914 | GTCCTGCGCATAAAA CCTGGCCG GTT CGGCCGGG GCTACCAGCATCACG Rfer_2405 2648603 - 2647695 - | triphosphoribosyl-dephospho-CoA synthase TERM 2537 2647908 - 2647932 + gr 74 -10.7 -3.50572 | overlap 2647899 2647909 CCCTTCCATGCCGCC GCGCGACACGA TGT TTGTGTCGCGA TTGTGTGCCATCAAT TERM 2538 2647909 - 2647931 + gr 81 -14.2 -2.70022 | overlap 2647899 2647908 CCTTCCATGCCGCCG CGCGACACGA TGT TTGTGTCGCG ATTGTGTGCCATCAA Rfer_2406 2649126 - 2648575 - | Holo-citrate lyase synthase Rfer_2407 2650666 - 2649128 - | citrate lyase, alpha subunit Rfer_2408 2651558 - 2650686 - | citrate lyase, beta subunit Rfer_2409 2651851 - 2651555 - | citrate lyase subunit gamma Rfer_2410 2652991 - 2651897 - | citrate lyase ligase Rfer_2411 2654058 - 2653021 - | isocitrate dehydrogenase (NAD+) Rfer_2412 2655514 - 2654069 - | anion transporter TERM 2539 2655923 - 2655872 - R 71 -10.3 -3.28791 | opp_overlap 2655889, overlap 2655874 2655875 2655922 ATTCGGCCCGCAGAA GAC-GCGTCCCGCAGAGATTGGGGC CCGG GTCCCAATCTCTGCC-GACACCATC GGCTCCCGCTGGGTA TERM 2540 2655920 - 2655874 - R 71 -10.9 -3.21276 | gap 1, opp_overlap 2655889, overlap 2655872 2655875 TCGGCCCGCAGAAGA CGCGTCCCGCAGAGATTGGGGC CCGG GTCCCAATCTCTGCC-GACACC ATCGGCTCCCGCTGG TERM 2541 2655919 - 2655875 - R 81 -14.4 -2.52623 | gap 1, opp_overlap 2655889, overlap 2655874 2655872 CGGCCCGCAGAAGAC GCGTCCCGCAGAGATTGGGGC CCGG GTCCCAATCTCTGCC-GACAC CATCGGCTCCCGCTG Rfer_2413 2656775 - 2655999 - | hypothetical protein TERM 2542 2657313 - 2657333 + G 83 -2.4 -5.28176 | overlap 2657293 CGTGCCGCGACCGAT CCCGAGCG CTGCA CGCTGGAG TTTTTTGTGCATGGC TERM 2543 2657544 - 2657519 - g 71 -8.3 -4.05193 | gap 1 CATGAAAGACAACAA CCAGAG-CGACA ACC TGGCGGCTCTGG TGGACTCGGGGATTC TERM 2544 2658589 - 2658601 + G 77 -3.3 -4.87893 | opp_overlap 2658574 2658590, overlap 2658587 2658590 GCCTGATGATCACCA AGCAC TGC GTGCG TTTTTCATTGAGCTT Rfer_2414 2656842 - 2658860 + | peptidase U32 Rfer_2415 2658969 - 2659502 + | hypothetical protein TERM 2545 2660060 - 2660071 + G 85 -7.2 -4.82901 | overlap 2660058 2660046 CCGCCGGTCCAGAGG CGGC CAGT GCCG TTTTTGTGGCCGGAG Rfer_2416 2659510 - 2660574 + | Alpha/beta hydrolase fold-3 TERM 2546 2660645 - 2660618 - T 74 -9.8 -3.76141 | overlap 2660616 2660619 ATGAGCACCAAAAGA CCCGCCAGCC TTTTAAGG GGCTGGCGGT GGTGGCGAGGAACCC TERM 2547 2660644 - 2660619 - T 79 -13.3 -2.84962 | overlap 2660618 2660616 TGAGCACCAAAAGAC CCGCCAGCC TTTTAAGG GGCTGGCGG TGGTGGCGAGGAACC Rfer_2417 2662085 - 2660841 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 2548 2661934 - 2661916 - G 77 -3.7 -5.00616 | overlap 2661917 CTGGGCGGCAAAAAA TGCCGCA AGGCG CGCGGCC CCGACAGCTGCACCG TERM 2549 2664141 - 2664118 - g 74 -5.3 -4.55295 | gap 1 TGCTTGAGAAAGAAA CGCTGGATGA GGACG CCATCC-GCG CCCTGGCGCAGGACC Rfer_2418 2662350 - 2664200 + | ATP-dependent metalloprotease FtsH Rfer_2419 2665086 - 2664181 - | ribonuclease BN, putative TERM 2550 2664320 - 2664309 - G 78 -7.2 -4.71776 | CAAGACTCAACAAAA CCGC GATC GCGG TGGTCAGCGAACCGT Rfer_2420 2669359 - 2665130 - | phosphoribosylformylglycinamidine synthase TERM 2551 2666348 - 2666360 + g 73 -4.8 -4.62069 | overlap 2666333 2666332 GCGCCGACCACTGAC CTGG CCGGC CCAG TTTTTGGCGTCGCCA TERM 2552 2667228 - 2667247 + g 73 -4.9 -4.59773 | GCCACGGTCGCACTA GCCAGCA CGTCGA TGCAGGC TTTTTGCAGATCGAC TERM 2553 2669759 - 2669730 - g 83 -4.9 -5.01732 | overlap 2669732 2669746 AAGCCGCTCAAAAAA GGCGATATCGTCA ACAT TGACGTCACCGTC ATCAAGGACGGCTGG Rfer_2421 2669448 - 2670275 + | methionine aminopeptidase, type I TERM 2554 2670811 - 2670827 + G 95 -2.2 -5.60993 | gap 1, overlap 2670816 CGTCAGTTTTTTTCA GCGATCG ACCC CGG-CGC TTTTTTTATCGCCAA TERM 2555 2670991 - 2671019 + G 80 -10.3 -4.13767 | opp_overlap 2671004 GGCAACGATTGGGAC GCGCTGGCCAA AAGCGGC TTGGCCACCGC TTTTGAAGTCCAACA TERM 2556 2671693 - 2671713 + G 79 -8.9 -4.1523 | CAGCACATCTTGATG GTGCTGCGC AAT GTGCGGCGC TTCTTTATCGTTGAA TERM 2557 2671866 - 2671825 - g 73 -9.9 -3.59738 | opp_overlap 2671821 2671853 2671864, overlap 2671817 2671826 CACGACATCGCCAAA GGCCGCGGCGGCGACCACT CGGA ACTGGGCGCCGTCGAGGCA CGCCGCTTTTGCAAG TERM 2558 2671865 - 2671826 - g 73 -13.4 -2.75521 | opp_overlap 2671821 2671853 2671864, overlap 2671817 2671825 ACGACATCGCCAAAG GCCGCGGCGGCGACCACT CGGA ACTGGGCGCCGTCGAGGC ACGCCGCTTTTGCAA Rfer_2422 2670328 - 2672919 + | PII uridylyl-transferase Rfer_2423 2674009 - 2672948 - | tRNA 2-selenouridine synthase TERM 2559 2673053 - 2673038 - G 76 -9 -4.13767 | TTTTGCATCTGAAAA GCGCAA AAAA TTGCGC TGCATCGACTGCAGA TERM 2560 2673317 - 2673341 + g 78 -9.9 -3.90425 | GGCTTCGATCAGCGC GGTCGGCACGG CCA CATTGCCGACC TTCTTGCTTTCGCTC Rfer_2424 2674545 - 2674009 - | lipolytic enzyme, G-D-S-L TERM 2561 2675129 - 2675161 + G 78 -10.4 -3.96148 | opp_overlap 2675138 AAGGTGCTCAGTGGC GGCGAGCAACAGCG GGTGG CGCTGGCGCGCGCC TTTGTCGTCAAACCG Rfer_2425 2674691 - 2675377 + | ABC transporter related Rfer_2426 2676420 - 2675605 - | MscS mechanosensitive ion channel Rfer_2427 2677347 - 2676673 - | hypothetical protein TERM 2562 2677408 - 2677385 - R 100 -4.4 -6.58542 | TTCTAAAAAAAAAAA GCCCTTGGTC GTTG AACCGCGGGC GCCAGGAATTGAGTC Rfer_2428 2677904 - 2677476 - | large conductance mechanosensitive channel protein Rfer_2429 2678143 - 2678559 + | hypothetical protein TERM 2563 2678665 - 2678642 - T 81 -14.6 -2.64973 | opp_overlap 2678632 2678658, overlap 2678632 ATTAACGCGACATGA GGGTGCCAAC CTTG GTCGGCACCC TCGCGATAGAGTGCT Rfer_2430 2679015 - 2678686 - | hypothetical protein TERM 2564 2679515 - 2679533 + G 71 -5.3 -4.36914 | gap 1 TCGTGGTGAACGTGG CGCA-GGT CCAG ACCATGCG TTTTATAGGGGCGAG Rfer_2431 2679279 - 2679713 + | integral membrane protein-like Rfer_2432 2680105 - 2680710 + | cytochrome B561 Rfer_2433 2681144 - 2680692 - | transposase, IS4 TERM 2565 2681048 - 2681064 + g 82 -8.7 -4.29738 | opp_overlap 2681051 CAACAAGGACGTCTA CAACTCG CAC CGGGTTG TTTTCATCAATGTAG Rfer_2434 2681618 - 2682361 + | NAD(P)H dehydrogenase (quinone) Rfer_2435 2682429 - 2682800 + | hypothetical protein Rfer_2436 2682854 - 2683306 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Rfer_2437 2684257 - 2683562 - | short-chain dehydrogenase/reductase SDR Rfer_2438 2685765 - 2684791 - | LysR family transcriptional regulator TERM 2566 2684930 - 2684906 - G 74 -5.5 -4.51196 | overlap 2684907 GCCAAATCGATAAAA GCGCGCACCCG AGC CGGCTGCGAGG TACGGCTGCCGTAGT Rfer_2439 2685962 - 2687023 + | zinc-binding alcohol dehydrogenase Rfer_2440 2687020 - 2687604 + | NAD-dependent epimerase/dehydratase Rfer_2441 2687634 - 2688464 + | carboxymuconolactone decarboxylase Rfer_2442 2688495 - 2689613 + | hypothetical protein Rfer_2443 2689645 - 2691090 + | major facilitator transporter Rfer_2444 2691119 - 2692114 + | aldo/keto reductase TERM 2567 2692827 - 2692803 - g 83 -2.7 -5.17353 | opp_overlap 2692809 AGATCGACGAAAAAA CGAAGTTCGAC AAA GACGACTTTCG CAACATCGTGCCTCG Rfer_2445 2692154 - 2693137 + | aldo/keto reductase TERM 2568 2694411 - 2694425 + G 80 -10 -4.07885 | AGTGCCGTGTTCGAT GGTCTG CTG CAGACC TTTTCAAAGGAGGTG Rfer_2446 2693511 - 2694461 + | chromate resistance exported protein Rfer_2447 2694448 - 2695641 + | chromate transporter Rfer_2448 2695657 - 2696028 + | rhodanese-like protein Rfer_2449 2695988 - 2696269 + | hypothetical protein Rfer_2450 2697140 - 2696940 - | hypothetical protein Rfer_2451 2699202 - 2697142 - | carbon starvation protein CstA TERM 2569 2697969 - 2697959 - G 70 -4.6 -4.46212 | GGCGTGATGATAAAA CCCC ACT GGGA AATGATCTGTGCGGC TERM 2570 2698242 - 2698218 - G 72 -2.7 -4.8543 | overlap 2698222 2698230 CAATCGTGATAAAAA TGAACGGAAAG AGG CTACCCGACCA AGCCGGACCGGTGCC TERM 2571 2698501 - 2698459 - G 72 -11.8 -3.27525 | opp_overlap 2698460 2698464, overlap 2698454 2698461 2698462 GGCGTCGAAAGTGAA CAGCGGCGCCCACGTCGCGC TTT GCGCGACCTGGCCACCAAGG ATGATGGAGGCGATA TERM 2572 2698499 - 2698461 - G 74 -13 -3.20349 | opp_overlap 2698460 2698464, overlap 2698459 2698454 2698462 CGTCGAAAGTGAACA GCGGCGCCCACGTCGCGC TTT GCGCGACCTGGCCACCAA GGATGATGGAGGCGA TERM 2573 2698498 - 2698462 - G 78 -16.5 -2.51888 | opp_overlap 2698460 2698464, overlap 2698461 2698459 2698454 GTCGAAAGTGAACAG CGGCGCCCACGTCGCGC TTT GCGCGACCTGGCCACCA AGGATGATGGAGGCG Rfer_2452 2700190 - 2699474 - | putative two-component response-regulatory protein YehT Rfer_2453 2701890 - 2700184 - | histidine kinase internal protein TERM 2574 2701578 - 2701568 - G 70 -3.2 -4.59773 | GCCGAGGCCGAAAAA CCAC CAA GTGA ATAGCGGTGCAGACC Rfer_2454 2702411 - 2702800 + | hypothetical protein TERM 2575 2702902 - 2702926 + F 100 -15.7 -3.87149 | opp_overlap 2702902 GCGCTAAAAAAAAAA GCCCCATCTCC GCG GGAGAAGGGGC TTTGAATTTGGTAGG TERM 2576 2702926 - 2702902 - f 100 -15.7 -6.34424 | opp_overlap 2702902 GCGCTAAAAAAAAAA GCCCCATCTCC GCG GGAGAAGGGGC TTTGAATTTGGTAGG TERM 2577 2703084 - 2703063 - f 71 -9.5 -3.60627 | opp_overlap 2703063, overlap 2703079 TTAGCCCACCTCAAA CCCGAACTT GCAC AAGTTCAGG TGTCTGAAGACCTCC Rfer_2455 2703177 - 2703968 + | hypothetical protein TERM 2578 2705129 - 2705090 - g 75 -8.5 -4.18018 | opp_overlap 2705089, overlap 2705091 CTGGCTCAGGCAAAA CGTGGCGCCGCACAAAG ACCCCG CTTTGCGCGCCGTCACC CTGTCGTTCAAGCGC Rfer_2456 2704032 - 2705849 + | nitrite and sulphite reductase 4Fe-4S protein TERM 2579 2706148 - 2706115 - g 74 -11.6 -3.55801 | opp_overlap 2706116 2706146, overlap 2706105 2706116 ACCAAGTGCTGCAAA TGCAGCGCAGCGGC TTTGAT GCCGCCGTGCTGCG CGCTGACCAGGACAT TERM 2580 2706147 - 2706116 - g 77 -15.1 -2.73159 | opp_overlap 2706116 2706146, overlap 2706105 2706115 CCAAGTGCTGCAAAT GCAGCGCAGCGGC TTTGAT GCCGCCGTGCTGC GCGCTGACCAGGACA Rfer_2457 2705862 - 2706302 + | hypothetical protein TERM 2581 2706375 - 2706421 + G 76 -15.1 -2.54523 | gap 1, opp_overlap 2706369 GCTGCAACAGGCCGC GCGTGACTACGCGCCGCTGAGC GCAG GTACTGCGCCGCGT-GTCACGC TGGCTTGCAGTCTGG Rfer_2458 2706289 - 2707050 + | phosphoadenylyl-sulfate reductase (thioredoxin) TERM 2582 2707553 - 2707532 - g 70 -3.5 -4.71426 | opp_overlap 2707534, overlap 2707527 2707533 2707534 GCGTGACGAAGAAAA GGCGCGCGC CAAG GAGCGCATC TTCAGCCACCGCGAC Rfer_2459 2707047 - 2708018 + | sulfate adenylyltransferase subunit 2 TERM 2583 2708579 - 2708550 - g 76 -14.2 -3.06815 | opp_overlap 2708570 2708571 ATGCGCTGGAAGACA CGGCCAAGCCCG AGACGG CGGGCCAGGCCG CACTGGCGTTTGCCA TERM 2584 2708959 - 2708993 + G 72 -11.2 -3.4072 | overlap 2708960 GGGCCACACGCGCCA ACCCGGCGCGGTGGCC GCC GGGCACAGCGCCGGCA TTGTGCTGGACCGTG TERM 2585 2708960 - 2708992 + G 76 -14.7 -2.64218 | overlap 2708959 GGCCACACGCGCCAA CCCGGCGCGGTGGCC GCC GGGCACAGCGCCGGC ATTGTGCTGGACCGT TERM 2586 2709172 - 2709182 + G 75 -8.2 -4.16016 | overlap 2709159 CGACGAGCCGCTGGT CGCG GGT CGCG TTTATTGGGCGCTGC Rfer_2460 2708018 - 2709430 + | Sulfate adenylyltransferase, large subunit Rfer_2461 2709534 - 2709863 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 2587 2709917 - 2709899 - g 76 -8.8 -4.06148 | AAGACCCCATAGAAA CCGACGCT GTG ATCGTCGG TGCCGGCCCGGTCGG Rfer_2462 2709871 - 2710935 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rfer_2463 2711156 - 2712463 + | permease for cytosine/purines, uracil, thiamine, allantoin Rfer_2464 2712460 - 2713536 + | FAD dependent oxidoreductase Rfer_2465 2713533 - 2713730 + | thiamine biosynthesis protein ThiS TERM 2588 2714538 - 2714571 + G 71 -6.5 -4.14511 | opp_overlap 2714513, overlap 2714538 GCCCGAGCAGCAGGC GGCGCAGCCCAGCAC CCCC GTGCTGGGCACACCC TTTTGGCATCAGCTT thiG 2713762 - 2714601 + | thiazole synthase TERM 2589 2714751 - 2714737 - g 71 -8.5 -4.07687 | opp_overlap 2714734 2714737 ACCGCGCCGCCAAAA GCGCC TGCCT GGCGC TCGGTTTCATTGAGG Rfer_2467 2714598 - 2715536 + | thiamine-phosphate diphosphorylase Rfer_2468 2715932 - 2715585 - | cytochrome c, class I Rfer_2469 2715995 - 2716240 + | hypothetical protein Rfer_2470 2717119 - 2716277 - | phosphomethylpyrimidine kinase TERM 2590 2716922 - 2716964 + g 80 -10.6 -4.09685 | gap 1 AATCTGGTCGCGCAG CATCTGCGGCG-GCACG GCATGGATCG CGCGCACGCCGCAGGTG TTTTGCGCCGTGAGC thiE 2717807 - 2717148 - | thiamine-phosphate pyrophosphorylase Rfer_2472 2718634 - 2717801 - | hydroxyethylthiazole kinase Rfer_2473 2719803 - 2718844 - | hypothetical protein TERM 2591 2719733 - 2719752 + g 72 -12.1 -3.12351 | TTCACATCCAGCATG CGGGCCG TGTTCT CGGCCCG TTCGGTGTAACGCGA Rfer_2474 2721368 - 2719821 - | hypothetical protein TERM 2592 2721110 - 2721097 - G 77 -8.1 -4.37886 | CCACGCTCCAGAAAA GCCCA GTCC TGGGC GGCAATGATGCGAGG tnaA 2722885 - 2721515 - | tryptophanase TERM 2593 2722310 - 2722331 + g 80 -10.9 -3.72324 | gap 1 GATATTGGCCATGGA CACCGGCTGG CCG CCA-CCGGTG TTGTTGGTCACGGTG Rfer_2476 2725279 - 2722979 - | DNA internalization-related competence protein ComEC/Rec2 TERM 2594 2724878 - 2724922 + g 78 -13.6 -3.14344 | gap 2 CAGGCGCACGGTGAA TTGCCAGCGCTCGCCTGCCTGC AGG GC-GGCGGGCTGGCGCTG-CAG TTCATCCCCCAGATC Rfer_2477 2728479 - 2725501 - | hypothetical protein TERM 2595 2725570 - 2725584 + g 78 -5 -4.7254 | CCCACTCAAGCGCAG GATGAT GTT GTCATC TTTTTGCTGCGCGCT TERM 2596 2727404 - 2727418 + g 78 -2.7 -5.14563 | opp_overlap 2727405, overlap 2727405 AATTCGGCGCGCAAG AGGCG CCAGT CGCCA TTTTTTACTGCGAAG Rfer_2478 2730343 - 2728586 - | thiamine pyrophosphate enzyme-like TPP binding protein TERM 2597 2730018 - 2730074 + g 84 -9.4 -4.57073 | gap 2, overlap 2730019 GCGCCGCGCCCCTGC AGTGCGGTGGGCGCAGCGCCACCGATGA GAA TCACCGGTGAC--TGCGCCAACTGCGCA TTTTTCAGGGCCGTG TERM 2598 2730019 - 2730073 + g 76 -12.9 -3.33922 | gap 2, overlap 2730018 CGCCGCGCCCCTGCA GTGCGGTGGGCGCAGCGCCACCGATGA GAA TCACCGGTGAC--TGCGCCAACTGCGC ATTTTTCAGGGCCGT Rfer_2479 2732040 - 2730361 - | AMP-dependent synthetase and ligase TERM 2599 2730846 - 2730830 - G 78 -2.2 -5.08824 | opp_overlap 2730818, overlap 2730831 CCGGTACGGAAAAAA CCGTCC TCTGT GAACGA CGCCGCCGTCAGCTC TERM 2600 2731332 - 2731321 - G 74 -5.8 -4.56597 | overlap 2731323 CGCCTCGGCGAAAAA GACG TGCG CGTC ACCGCCGACCAGCGT TERM 2601 2731475 - 2731454 - G 76 -5.7 -4.59773 | GTGTAGTTGGAAAAA CCTTCCCCC GCGC GGGTGATGG CGCCAAAGCTCACCA TERM 2602 2732034 - 2732051 + g 100 -2.7 -5.88565 | gap 1 GGATCAGTTTTGAAT CGGGCATG GGG CAT-CCTG TTTTTTTGTTCTCGC Rfer_2480 2734859 - 2732280 - | diguanylate cyclase with PAS/PAC sensor TERM 2603 2733229 - 2733241 + g 73 -9.1 -3.92178 | GTCTGATCTGCCACT CGCTG CTC CAGCG TTTCGTTGACCTCCT TERM 2604 2734094 - 2734084 - G 85 -5.4 -5.055 | opp_overlap 2734084 CCAAGGCGCAAAAAA TTGG AAT CCAA CTTCTGCGCCTGCTC TERM 2605 2734444 - 2734397 - G 70 -3.3 -4.59853 | gap 1, opp_overlap 2734401 2734402 2734404, overlap 2734386 2734398 2734400 2734401 CCAACCCGGTAAAAA TCAGCCGGGCCAGC-AGGGCAT TGGCC ATGCCGTTGCTGGCCTGCTTGG TCATGAGGAAGGTAA TERM 2606 2734402 - 2734439 + g 76 -15 -2.52516 | gap 1, opp_overlap 2734386 2734400 2734401 2734398 2734397, overlap 2734401 2734404 CCGGTAAAAATCAGC CGGGCCAGCAG-GGCAT TGGCC ATGCCGTTGCTGGCCTG CTTGGTCATGAGGAA TERM 2607 2734404 - 2734437 + g 73 -14 -2.80016 | gap 1, opp_overlap 2734386 2734400 2734401 2734398 2734397, overlap 2734402 2734401 GGTAAAAATCAGCCG GGCCAGCAG-GGCAT TGGCC ATGCCGTTGCTGGCC TGCTTGGTCATGAGG Rfer_2481 2736666 - 2734927 - | methyl-accepting chemotaxis sensory transducer Rfer_2482 2737625 - 2736747 - | putative signal transduction protein TERM 2608 2737069 - 2737054 - G 78 -4.6 -4.86293 | overlap 2737057 TAACAAAAACCAAAA GACCGG TGCT CCAGCC TGGCACGCCGCAAAT TERM 2609 2737413 - 2737398 - G 76 -6 -4.61231 | overlap 2737400 CGAGAGCTTGAAAAA GCCCGC ATTG GCGGTC TGCAACAAGCGCGTC Rfer_2483 2740115 - 2737692 - | RNA binding S1 TERM 2610 2738129 - 2738150 + g 89 -10.1 -4.59773 | gap 1, overlap 2738129 GTGCCACCTTGAAGT CC-GGTCGCG GAT CGCGGCCCGG TTTTTCCAGCTCGCC TERM 2611 2739068 - 2739096 + g 81 -13.7 -3.28712 | CCACCCGCGGCCCGG CCGGCGCGGCCAG CAG CAGGTCGCGCAGG TTGTCGGCAAACACC Rfer_2484 2740344 - 2741126 + | hypothetical protein TERM 2612 2742256 - 2742267 + G 75 -2.2 -4.93296 | overlap 2742235 TGGATGGCGGGATCA TCGT GCTG GCGA TTTTTGTGCTGGTCA TERM 2613 2742710 - 2742721 + G 73 -4.4 -4.60255 | CGCCATCAGCATCAC CTTG GTCG CAAG TTTTTACGAGGTTCT TERM 2614 2743210 - 2743194 - g 73 -4.3 -4.66609 | opp_overlap 2743194 2743196 GACGTCACCGAAAAA TCCAGGG CCA CCGCGGA TCTGTATTTCCTGGC Rfer_2485 2741667 - 2744621 + | diguanylate cyclase/phosphodiesterase Rfer_2486 2744961 - 2747111 + | histidine kinase TERM 2615 2748493 - 2748514 + G 70 -3.7 -4.59853 | gap 1, opp_overlap 2748490 GTACCACATGAAGGC CGAG-GGC AAGAACG GCCACTCG TTTTTCGACCGTTCA Rfer_2487 2747108 - 2749315 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2616 2749439 - 2749478 + T 81 -13.4 -2.90813 | opp_overlap 2749469, overlap 2749436 2749457 2749458 TCCCCCACTCACTCC CCCGCCCCTCTCCCGCCC CGCC GGGCGAAAGAGGGGCGCC TCATTTGGCCGCGTC Rfer_2488 2750673 - 2749759 - | hypothetical protein TERM 2617 2750235 - 2750253 + g 81 -4.5 -5.0133 | gap 1 CGGTGTTGACGATAT GGCCGCGG TAGG CCG-GGTC TTTTTTGGCGGCGTC TERM 2618 2750370 - 2750389 + g 73 -10.6 -3.61398 | opp_overlap 2750367 TCTCCCAGATCAGCC CACCGGCG CCGA CGCCGGCG TTGTTAAAGACCAGA Rfer_2489 2751206 - 2750712 - | GCN5-related N-acetyltransferase Rfer_2490 2752144 - 2751203 - | putative glutathione S-transferase-related protein TERM 2619 2752023 - 2751983 - G 76 -5.4 -4.59773 | gap 2, opp_overlap 2751983 2752002 GCCGATCTGCAAAAA CGG-CGT-CTTGCGGTAACC GCC GGTGAGCGCCAGCACGTCCG GTTTGGGCATGATGG Rfer_2491 2753235 - 2752219 - | zinc-binding alcohol dehydrogenase Rfer_2492 2753773 - 2753333 - | phenylacetic acid degradation-related protein Rfer_2493 2754600 - 2753776 - | gluconate 5-dehydrogenase TERM 2620 2755242 - 2755204 - g 93 -8.2 -5.0133 | gap 1 CAGCGGGCCAAAAAA CCGGTACACACGTCACT GGCGTG AGTGACCTGTGG-CCGG TGCGGCTGCAGTTCG Rfer_2494 2754756 - 2755778 + | hypothetical protein Rfer_2495 2755795 - 2757063 + | diguanylate cyclase Rfer_2496 2757819 - 2757133 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 2621 2758580 - 2758616 + G 74 -12.1 -3.14132 | opp_overlap 2758582 GATGGACAACCTGAA AACGAGGTGCCCGACCG GGG CGGACGCGCACCTCGCG TTGCTCACCCCCGGC TERM 2622 2758614 - 2758582 - g 100 -19.1 -4.21936 | opp_overlap 2758580 TGGACAACCTGAAAA CGAGGTGCCCGACCG GGG CGGACGCGCACCTCG CGTTGCTCACCCCCG TERM 2623 2759524 - 2759508 - g 73 -10.1 -3.59979 | GTGGCGCAGCCCAAA CGACTGG TCA CCAGCCG CGCAGCAGAAAATCT TERM 2624 2759977 - 2759950 - g 85 -2.6 -5.41746 | overlap 2759953 2759962 AACTGCTGAAAAAAA CCAGTGACCACA TGGC CGCCATCACCGG CGCCCAGACGGATCG TERM 2625 2760350 - 2760389 + G 83 -4.2 -5.0538 | gap 1, opp_overlap 2760364, overlap 2760353 GACGTGGGACCTGGC GCACCTGTGCGAAACCCGG CCA TCGGGT-TCAAACGGGTAC TTTTTTGCGCTGAAC Rfer_2497 2757894 - 2760509 + | hypothetical protein Rfer_2498 2760506 - 2761498 + | transglutaminase-like Rfer_2499 2762534 - 2761590 - | hypothetical protein TERM 2626 2761733 - 2761721 - G 89 -6.9 -5.06103 | AGAAGTCGTAAAAAA GCACG TCA CGCGC AGCAAGTAAACGCGA Rfer_2500 2764010 - 2762538 - | membrane bound O-acyl transferase, MBOAT Rfer_2501 2764660 - 2764043 - | hypothetical protein TERM 2627 2764695 - 2764681 - R 77 -7.8 -4.26076 | GGACTCCGATCAAAA CCGCAA ATC CTGCGG CACGTCCTCGATCTT Rfer_2502 2765232 - 2764675 - | hypothetical protein Rfer_2503 2765519 - 2765229 - | hypothetical protein Rfer_2504 2766508 - 2765519 - | transketolase-like Rfer_2505 2767724 - 2766501 - | twin-arginine translocation pathway signal TERM 2628 2768223 - 2768183 - g 70 -3.7 -4.59853 | opp_overlap 2768199, overlap 2768196 CCAATTCGGCAAAAA CATCAGCACCGAAGACGGC AAA GCCGCCGCCCGCGCCATCG CCATTGATCTGATAG Rfer_2506 2768019 - 2768474 + | endoribonuclease L-PSP Rfer_2507 2770410 - 2768641 - | methyl-accepting chemotaxis sensory transducer TERM 2629 2769005 - 2769023 + g 71 -6.6 -4.20516 | opp_overlap 2769006, overlap 2769006 2769012 CCAATGGCCTGATTA ACATGGGC AAT GCCCGTGC TTTGTTCGCTGGAGG TERM 2630 2769845 - 2769829 - G 95 -6.5 -5.50925 | overlap 2769841 AAGCAACACAAAAAA CGCGG CCAAAAT CCGCG CAATTGAGGCACGGG TERM 2631 2770095 - 2770109 + g 71 -5.6 -4.36914 | overlap 2770064 CGTCCTTGCCCAGCG GCATCG CTT CGAGGC TTTTCTGAACCACAG Rfer_2508 2770989 - 2770504 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Rfer_2509 2772593 - 2770986 - | poly(A) polymerase TERM 2632 2771036 - 2771053 + g 100 -8.3 -5.47821 | overlap 2771037 CCCTGGGGCCATTGC TGCGCCG GCGC CGGCGCC TTTTTTTGGGTGCAT TERM 2633 2771037 - 2771052 + g 82 -11.8 -3.87608 | overlap 2771036 CCTGGGGCCATTGCT GCGCCG GCGC CGGCGC CTTTTTTTGGGTGCA TERM 2634 2771201 - 2771220 + g 74 -12.8 -3.20709 | overlap 2771200 2771201 GTGCCTTGTGCACGC GCGGCGCC CGCT GGCGCTGC TGTTGCTGCTGTTCT TERM 2635 2771379 - 2771359 - G 82 -9 -4.30014 | gap 1, overlap 2771362 2771370 CGCATGAAGTCAAAA GCAG-CGCG AAAG CGCGCCTGC TCGACCAGACCGAAG Rfer_2510 2773414 - 2772740 - | HAD family hydrolase TERM 2636 2772880 - 2772870 - G 70 -3.2 -4.62783 | GAGTCACTGTAAAAA GTAG TCT CCAC ATCGGCCCAATCCAG TERM 2637 2772919 - 2772930 + g 78 -4.4 -4.8622 | overlap 2772916 2772912 TGGCCAGCCACTGCG TCAC ACGC GTGA TTTTTCCTTCCCGGA Rfer_2511 2774115 - 2773429 - | chromosomal replication initiator, DnaA TERM 2638 2774590 - 2774607 + G 85 -7 -4.7373 | opp_overlap 2774580, overlap 2774594 AACGACGTGCTGGTG CAAGGG GCCGAG CCCTTG TTTTTCCTGGACTAC TERM 2639 2774594 - 2774604 + G 79 -8.2 -4.47707 | overlap 2774590 ACGTGCTGGTGCAAG GGGC CGA GCCC TTGTTTTTCCTGGAC Rfer_2512 2774284 - 2775333 + | phosphoribosylformylglycinamidine cyclo-ligase Rfer_2513 2775357 - 2776538 + | major facilitator transporter Rfer_2514 2777148 - 2776630 - | hypothetical protein Rfer_2515 2777655 - 2777203 - | hypothetical protein TERM 2640 2777500 - 2777533 + g 77 -15.3 -2.69799 | opp_overlap 2777502, overlap 2777497 2777502 TTTCTTCCCGCCATA GAGCCACTCGGGCGT AAAA ACGCTCGGGTAGCTC TGCTCTATCGACTGC TERM 2641 2777502 - 2777531 + g 70 -12.1 -2.89177 | opp_overlap 2777502, overlap 2777500 2777497 TCTTCCCGCCATAGA GCCACTCGGGCGT AAAA ACGCTCGGGTAGC TCTGCTCTATCGACT TERM 2642 2777708 - 2777692 - R 70 -9.5 -3.3344 | opp_overlap 2777684 AGCTAACGGGCAGAA CAAAAGC GTA GCTTTTG GGCTGTCCCTGTTGA Rfer_2516 2778720 - 2777770 - | hypothetical protein TERM 2643 2778561 - 2778576 + g 76 -5.4 -4.61231 | opp_overlap 2778561 TCAAGATGAAATCGA CACGGT AACG ACTGTG TTTTTCAGGGTCTCC Rfer_2517 2779516 - 2778830 - | hypothetical protein TERM 2644 2779538 - 2779587 + r 91 -14.4 -3.01712 | gap 2, opp_overlap 2779540 2779547 TGCTCAGGCCCAACG TAGAGGT-AACCGG-CCTGCGCGG CTTT TCGCGCAGGTCCGGTTGACCGCCA TGTTAGGCCAAGGCG TERM 2645 2779585 - 2779540 - R 89 -16.3 -2.53263 | gap 2, opp_overlap 2779538, overlap 2779547 CTCAGGCCCAACGTA GAGGT-AACCGG-CCTGCGCG GCTTTT CGCGCAGGTCCGGTTGACCGC CATGTTAGGCCAAGG TERM 2646 2779577 - 2779547 - R 100 -16.2 -3.14522 | gap 1, opp_overlap 2779538, overlap 2779540 CCAACGTAGAGGTAA CCGG-CCTGCGCG GCTTTT CGCGCAGGTCCGG TTGACCGCCATGTTA Rfer_2518 2780383 - 2779637 - | hypothetical protein Rfer_2519 2780434 - 2781063 + | transposase TERM 2647 2781670 - 2781635 - g 71 -9 -3.70773 | gap 1 TGGGACATGCAACAA CTTGATGGCG-CCACCC TGA GTGCGGTCGACATCAAG GCGCGCACCGCCACC Rfer_2520 2781191 - 2781757 + | isochorismatase hydrolase Rfer_2521 2781754 - 2782371 + | ThiJ/PfpI Rfer_2522 2782374 - 2782601 + | hypothetical protein Rfer_2523 2782601 - 2783590 + | AraC family transcriptional regulator Rfer_2524 2784585 - 2783632 - | peptidase C39, bacteriocin processing TERM 2648 2784557 - 2784540 - G 100 -12.7 -5.27335 | CCGCGCAAACAAAAA CCCCCGT CAAG ACGGGGG CTCGCAGACCAATGA Rfer_2525 2784971 - 2784582 - | hypothetical protein TERM 2649 2784992 - 2785027 + r 83 -10.4 -4.00532 | overlap 2784995 TCTCTCTTGGGTTAT GAGGAGGCGCGGTCTC TGCC GAAACTGCGCTTCGTC TTTCATATTTGACCC Rfer_2526 2785935 - 2785084 - | hypothetical protein Rfer_2527 2787239 - 2785956 - | MscS mechanosensitive ion channel TERM 2650 2787013 - 2786975 - G 71 -6.4 -4.14392 | overlap 2787003 2787004 GCGCAATTTTGAAAA CGGCCAGCGGCACCCGGC CCA GCAGCAAGGCTCTGGCCG CGTAGGCCAGACACA Rfer_2528 2788179 - 2787232 - | histone deacetylase superfamily protein TERM 2651 2787328 - 2787348 + g 85 -12.5 -3.74872 | overlap 2787330 CACAATGCGTCCCTT GCCGTGGCG CCG CGCCACGTC TTTGATGCGATGCGT TERM 2652 2787330 - 2787346 + g 86 -13.7 -3.4582 | overlap 2787328 CAATGCGTCCCTTGC CGTGGCG CCG CGCCACG TCTTTGATGCGATGC TERM 2653 2788856 - 2788844 - g 75 -7.7 -4.14739 | opp_overlap 2788846 CGACGGAGCTGAAAA TGCTG CAG CAGCA GGTGCTGGCCATCCA Rfer_2529 2788228 - 2789148 + | AAA_3 ATPase TERM 2654 2789914 - 2789902 - g 74 -6.2 -4.56597 | overlap 2789911 CGTGGTCTGGAAAAA GGCC GCAAA GGCC GATGAGTTGGTCAGC TERM 2655 2790139 - 2790116 - g 70 -3.1 -4.59773 | overlap 2790118 GGTGAGGCGCAAAAA CGCC-GCTGCC TGCA AGC-GCTGGCG CTGTGCGGAGCTTGA Rfer_2530 2789129 - 2790154 + | hypothetical protein TERM 2656 2790489 - 2790509 + G 84 -3.2 -5.27923 | CTGGAGCTGCGCGCC CGCCGTGA TGCCT TCGTGGTG TTTTTTCTGAGCTTC TERM 2657 2790530 - 2790542 + G 84 -3.3 -5.18726 | TCTGAGCTTCTTCAT GATGC TGA GCAAC TTTTTCTTCTCGCAG Rfer_2531 2790165 - 2792186 + | transglutaminase-like Rfer_2532 2792456 - 2793127 + | hypothetical protein Rfer_2533 2794123 - 2793224 - | LysR family transcriptional regulator TERM 2658 2794436 - 2794387 - g 76 -9.9 -3.75505 | gap 1, overlap 2794355 2794384 TTTGAAAAAGCACAA GCGGTGGCCGCAGCCAACATCGGC GCA ACCGCCGTCG-CCACAGCCAACGC AACCGCTCAAGCTGA Rfer_2534 2794276 - 2794908 + | NADP oxidoreductase, coenzyme F420-dependent TERM 2659 2794954 - 2794916 - f 72 -11 -3.08679 | overlap 2794899 GCGCTTGATCCAAGA CCCGCGATCTGCAAGCGT CTA AGGCTTGCAGATCAAGCG ACCCTATCCATCAAC TERM 2660 2795239 - 2795251 + G 73 -9.1 -3.97307 | CCTGGCGGGCTTCAC GCTGG TGG CCAGC TTCTTCTTCCATGCC Rfer_2535 2794994 - 2795404 + | DoxX Rfer_2536 2795436 - 2796227 + | extradiol ring-cleavage dioxygenase III subunit B Rfer_2537 2796227 - 2796886 + | phospholipase/carboxylesterase Rfer_2538 2796888 - 2797457 + | hypothetical protein Rfer_2539 2799344 - 2797467 - | K+ potassium transporter TERM 2661 2797683 - 2797704 + g 82 -12.3 -3.62046 | gap 1, opp_overlap 2797676 TTGACAGAGCTCCAG CGCCCGCGGA ATA TCCG-GGGCG TTCTTGAAGCCGTAG TERM 2662 2798146 - 2798127 - G 73 -4.2 -4.59773 | gap 1, overlap 2798129 2798131 2798132 GTCGAGGGCCAAAAA CAC-AGCGG TGG CCGCCAGCG CCACCGGCAAGGGGT TERM 2663 2798748 - 2798727 - G 73 -8.7 -3.99805 | opp_overlap 2798740 GCGCAAAAATTCAAA GGCGTTCAA GGGG TTGAGCGCC GCCAGAATGGCCGGC TERM 2664 2799035 - 2799052 + g 80 -10.5 -4.07687 | opp_overlap 2799017 2799015 2799035 CCATCAGCAGCAATA CGGTGCG CCGC CGCGCCG TTTTGCCGGCCGCGT Rfer_2540 2800104 - 2799418 - | two component transcriptional regulator Rfer_2541 2801612 - 2800101 - | periplasmic sensor signal transduction histidine kinase TERM 2665 2800204 - 2800168 - G 74 -5.8 -4.47328 | overlap 2800169 2800170 AAGGCGAGCACAAAA TTGCTGCCGCCGC-CCCG GCG CGGGCGCAGCGTCAG-AC GCCCGCCATGCGCGA TERM 2666 2800506 - 2800552 + g 84 -10.7 -4.21631 | gap 1, overlap 2800507 ATTGGACTTGATGCG GCGCTGGGAGTCACGCTGGCGC ACCC GCGCCAGCACGGCACCCA-CGA TTTCTTCCATCGATT TERM 2667 2800507 - 2800551 + g 76 -14.2 -3.12256 | gap 1, overlap 2800506 TTGGACTTGATGCGG CGCTGGGAGTCACGCTGGCGC ACCC GCGCCAGCACGGCACCCA-CG ATTTCTTCCATCGAT TERM 2668 2801420 - 2801388 - G 76 -6.2 -4.72201 | gap 1, overlap 2801389 2801390 CGGCACAAAAAAGAA GTTCAGTGCCGTGAC CGCC GCCACGGCGCAG-AC GGCCGACTCAATCCA TERM 2669 2802002 - 2802019 + G 77 -11.3 -3.57561 | opp_overlap 2802001 2802012 2802013 GGGCTGGTGAATGAC GTGCAGG AAAT CCTGCAC TTTGCCGAATTCGGC TERM 2670 2802343 - 2802360 + G 70 -4.8 -4.56597 | gap 1, overlap 2802345 2802346 TCCTATCTTGGCCCT GCTGCCC TTGTT GGGC-GC TTTTTCAGGACAAGA TERM 2671 2802581 - 2802591 + G 77 -8.2 -4.38154 | overlap 2802574 GTGGGCCTGTCGATG GCGC TCG GCGC TTTTCTGGCCGGTGT Rfer_2542 2801843 - 2803660 + | glutathione-regulated potassium-efflux system protein KefC Rfer_2543 2804129 - 2803683 - | hypothetical protein TERM 2672 2804587 - 2804599 + G 70 -4.7 -4.56597 | opp_overlap 2804580, overlap 2804585 TCGATCAAGCGCTGG CTGGC ACC GCCCG TTTTTGAAGGCGCGG TERM 2673 2805005 - 2805020 + G 81 -8.2 -4.59853 | TGGCCGAGAATGCCG GGTGGC TGAG GCCGCC TTTTTACGACGTTGG TERM 2674 2805127 - 2805116 - g 88 -7.2 -4.92314 | overlap 2805117 ACCAAGGTACAAAAA GCGC GCTG GCGC TTGCCAGGAAGGAAA TERM 2675 2805256 - 2805271 + G 78 -10.4 -3.85817 | opp_overlap 2805246 GAACAGGCGATTCAT GACCCG CTGA CGGGTC TTTATAACCGCCGCT Rfer_2544 2804560 - 2805756 + | diguanylate cyclase TERM 2676 2806170 - 2806196 + G 73 -13.6 -2.71144 | CTGCCGCCTGACTGG GTGCGCCAGGCC ATC GGCCAGGCCCAC TACTTGCCGCAAGTG Rfer_2545 2805990 - 2807060 + | lytic murein transglycosylase B smpB 2807104 - 2807577 + | SsrA-binding protein Rfer_2547 2807612 - 2808097 + | hypothetical protein Rfer_2548 2808111 - 2808662 + | sigma-24 (FecI-like) Rfer_2549 2808679 - 2809497 + | putative transmembrane transcriptional regulator TERM 2677 2809575 - 2809558 - T 100 -12.7 -4.72272 | CGCCGCCAGCAAAAA GGGCCAC CGAA GTGGCCC TTCGACAGGCGAAGG frcK 2810282 - 2809623 - | putative fructose transport system kinase Rfer_2551 2810760 - 2810446 - | hypothetical protein Rfer_2552 2810764 - 2811174 + | glyoxalase I TERM 2678 2811208 - 2811190 - f 77 -7.3 -4.36595 | overlap 2811191 CATTCAAAGGCAAAA GCCTGGC ACCGG GCCGGGC CATGGAACCCGAGCG Rfer_2553 2811256 - 2811903 + | response regulator receiver/ANTAR domain-containing protein TERM 2679 2812184 - 2812127 - f 100 -14.2 -4.02022 | gap 2, opp_overlap 2812127, overlap 2812120 CTCAACCAGGACAAA GGCGTCCCCAC-AAGCAGGCA-GCGGCA GACC CGTCGCGCACCGGCTTCGTGAGGACGCC TTTTTTGTTTCTCAT TERM 2680 2812127 - 2812184 + F 100 -9.1 -5.73978 | gap 2, opp_overlap 2812120 2812127 CTCAACCAGGACAAA GGCGTCCCCAC-AAGCAGG-CAGCGGC AGACCC GTCGCGCACCGGCTTCGTGAGGACGCC TTTTTTGTTTCTCAT TERM 2681 2813092 - 2813077 - g 76 -5.4 -4.63592 | GGCCAACAAAAACAA GATGGC TGAA ACCATC GCCGAAAAATCGTAC Rfer_2554 2812229 - 2813473 + | twin-arginine translocation pathway signal TERM 2682 2813703 - 2813647 - g 76 -12.3 -3.3972 | gap 3, opp_overlap 2813665 2813666 2813694 2813696, overlap 2813640 2813649 CCAGAAAAGCATTAA GACGCCAGCCA-AGGCCAGCGCCCCGCC GTAC GACT-GGCGC-GGCCTTTGGCTGGCGGT GCTGCCGCCGGTGTT TERM 2683 2813701 - 2813649 - g 91 -19.3 -3.25714 | gap 3, opp_overlap 2813665 2813666 2813694 2813696, overlap 2813640 2813647 AGAAAAGCATTAAGA CGCCAGCCA-AGGCCAGCGCCCCGCC GTAC GACT-GGCGC-GGCCTTTGGCTGGCG GTGCTGCCGCCGGTG Rfer_2555 2813516 - 2814460 + | nitrate transport permease Rfer_2556 2814457 - 2815281 + | nitrate transport ATP-binding subunits C and D TERM 2684 2816437 - 2816415 - g 85 -7 -4.82901 | GGGCGTCTACAAAAA GCTCGTCATC AAG GACGACAAAC TGGTGGGTGCCTGCC Rfer_2557 2815312 - 2817783 + | nitrite reductase (NAD(P)H) large subunit, NirB Rfer_2558 2817932 - 2818279 + | nitrite reductase (NAD(P)H) large subunit, NirD TERM 2685 2819415 - 2819429 + G 74 -11.4 -3.54424 | overlap 2819375 AAAGAGGACTTGCTG CAGGCG GCG CGCCTG TTTGCCGGGATCAAC TERM 2686 2819702 - 2819684 - g 73 -10.2 -3.65046 | overlap 2819685 CCGCGACTTGAACAA CCCGGCGC ACC GCGCCGAA GTTGCCGCGCTGTGG TERM 2687 2820617 - 2820639 + G 82 -14.8 -3.16564 | GAGCGGCATCAGCAC CACCGGCCAG CGG CTGGCCGGCG TTAATGCCCTGACCA TERM 2688 2820792 - 2820812 + G 80 -11.2 -3.70902 | overlap 2820772 2820808 TCGGCTCGCCATGAG CTGCAGCA ATTGA TGCTGCAG TTTGACTATGCGAGC TERM 2689 2821011 - 2820996 - g 93 -11.8 -4.31433 | opp_overlap 2821000 TACGCCGACAAGAAA CGCGGC CAGC GCCGCG CTGCGCTGTTGCAAC TERM 2690 2821190 - 2821207 + G 71 -5.5 -4.34402 | overlap 2821183 GGTGGTGTCGCGCGG CAAGCCC GTGT GTGCTTG TTTTAATGTGACCGA TERM 2691 2821438 - 2821409 - g 100 -20.9 -5.45726 | TACAGCTCAAAAAAA CACCCTGAGAGCA CACA TGCTCTCAGGGTG ACGATGCAGCCAAAT Rfer_2559 2818563 - 2821439 + | molybdopterin oxidoreductase fabG 2822204 - 2821467 - | 3-ketoacyl-(acyl-carrier-protein) reductase Rfer_2561 2823522 - 2822344 - | acetyl-CoA acetyltransferase TERM 2692 2822614 - 2822625 + g 76 -7.2 -4.56597 | GGCCTTCCAGCCCGC GCGC GCCA GCGC TTTTTGAGACGCCGG TERM 2693 2822752 - 2822808 + g 72 -13.5 -2.57132 | overlap 2822751 2822792 GGCCGTCATCACCAT CACGGCAGCGGCGCCGTCGTTGATGCC GGA GGCATTGCCGGCGGTCACGCTGCCGGC CTTGTCAAAGGCGGG TERM 2694 2823426 - 2823452 + g 84 -11.5 -4.08216 | GCAAGGCTTTGATGA CGGCGGCACCC AGCTC GGGTGCTGGCG TTTTGGCCAGGGTGC Rfer_2562 2825294 - 2823570 - | Poly(R)-hydroxyalkanoic acid synthase, class I TERM 2695 2823769 - 2823785 + g 70 -4.3 -4.44667 | overlap 2823729 AACTTGCCGTCAGAG CGTAACC AGT GGCTGCG TTTGTTCTTGGCCGG TERM 2696 2824403 - 2824380 - G 70 -3.7 -4.66537 | GCCGCCAACACAAAA GCCCAGCGC GTTGAT GCTCTTGGC CCCGGTGATGTCCTG Rfer_2564 2826381 - 2825620 - | hypothetical protein Rfer_2563 2825398 - 2825688 + | hypothetical protein TERM 2697 2826225 - 2826210 - GT 72 -2.4 -4.77165 | CCTGCGACAAGAAAA CCGGCC GCGC GCCCAG TGCCTGTTCCAGTTG TERM 2698 2826405 - 2826419 + Tr 73 -5.6 -4.58395 | opp_overlap 2826405 CGGGAGGCAAATTCA CGTCTG ACT CAGTCG TTTTTCAGGCCTGGC Rfer_2565 2828180 - 2826450 - | hypothetical protein Rfer_2566 2828281 - 2828583 + | antibiotic biosynthesis monooxygenase TERM 2699 2829005 - 2828992 - g 100 -8.1 -5.2422 | opp_overlap 2828999 AACGAGATGAAAAAA CAGGG CCGC CCCTG GTGCATCGGCAAGGG Rfer_2567 2828617 - 2829312 + | fumarylacetoacetate (FAA) hydrolase TERM 2700 2829484 - 2829505 + G 85 -13 -3.7282 | overlap 2829502 TGAGTTGACGGGCGT GGCCAGCG GCGCAG CGCTGGCC TTGTTCCTGCCCTGG Rfer_2568 2829338 - 2829820 + | hypothetical protein TERM 2701 2830230 - 2830276 + G 75 -7.7 -4.25283 | gap 1, overlap 2830231 2830259 GCGCCACGGCTACTC CGGCCGGCTCGCCACCGGCACG CTGG CG-GCCGGCGGCACGCTGGGCA TTTTGATACCGCCCT Rfer_2569 2829817 - 2831160 + | TRAP C4-dicarboxylate transport system permease DctM subunit Rfer_2570 2831179 - 2832270 + | twin-arginine translocation pathway signal TERM 2702 2832339 - 2832326 - g 70 -3.7 -4.6856 | opp_overlap 2832326 2832329, overlap 2832328 CAAACACTGCAAAAA CTGCG GCAC CGCCG TGGTTTACCGGCTGC Rfer_2571 2832294 - 2832839 + | NUDIX hydrolase TERM 2703 2833134 - 2833170 + G 78 -13.5 -3.15861 | opp_overlap 2833125, overlap 2833126 CAGCAACGCCATGGT GCGCGGCGCCCCCGGCT TTG AGACGGTGGCGCAGCAC TTGCTGGCGCTGCTC TERM 2704 2833193 - 2833229 + G 80 -3.5 -5.14563 | opp_overlap 2833212, overlap 2833204 CGCTGCTCGACGGCG CCGTGCTGGTGGCCCAC AAC GTGCGCTTTGACCACGG TTTTTTGCTGAACGA TERM 2705 2833501 - 2833487 - g 74 -11.4 -3.53012 | TGGCGCTGTTGCAAA GCAGCG CCA CGCTGC CACCGCAGTTGGAAA TERM 2706 2833781 - 2833754 - g 71 -6.2 -4.41348 | overlap 2833755 2833758 2833770 2833771 GGCTGGTGAAAGAAA GGCAGCCAGC CTACAACC GCCGGCTGCG CCGCGAAAGCACGCT Rfer_2572 2832943 - 2834373 + | DNA polymerase III, epsilon subunit TERM 2707 2834496 - 2834444 - T 100 -20.7 -2.73681 | gap 1, overlap 2834448 TAGCCAGGCCAATCA CGAAC-GGCCGCGCCGATGTCGCT GCAAGG AGCCACAGCGACGCGGCCGGTTCG CATCAGGCACTGAAC TERM 2708 2834491 - 2834448 - T 100 -20.3 -3.27774 | overlap 2834444 CAGGCCAATCACGAA CGGCCGCGCCGATGTCGCT GCAAGG AGCCACAGCGACGCGGCCG GTTCGCATCAGGCAC Rfer_2573 2835053 - 2834499 - | putative flavodoxin TERM 2709 2835106 - 2835084 - R 86 -12 -3.91716 | overlap 2835085 2835087 TGAGGTGCGAAAGAA CGAGGTCTGC GGC GCAGACCTCC GTGATCAAAAATGTG TERM 2710 2835105 - 2835085 - R 87 -15.5 -2.94708 | overlap 2835084 2835087 GAGGTGCGAAAGAAC GAGGTCTGC GGC GCAGACCTC CGTGATCAAAAATGT TERM 2711 2835103 - 2835087 - R 76 -12.3 -3.02371 | overlap 2835085 2835084 GGTGCGAAAGAACGA GGTCTGC GGC GCAGACC TCCGTGATCAAAAAT Rfer_2574 2835560 - 2835150 - | DoxX Rfer_2575 2836310 - 2835609 - | Pirin-like Rfer_2576 2837698 - 2836508 - | esterase, PHB depolymerase TERM 2712 2837766 - 2837746 - R 72 -11.8 -2.76046 | overlap 2837743 TCAAGGGGAAGATCA GCGCCGGC GATTG GCCAGCGC AGCCTTCACCGCCGG Rfer_2577 2838168 - 2837743 - | hypothetical protein Rfer_2578 2838433 - 2839038 + | hypothetical protein Rfer_2579 2839442 - 2839035 - | hypothetical protein TERM 2713 2839353 - 2839311 - G 71 -6.1 -4.35483 | overlap 2839337 CGCCAGCAGAACAAA CGGGGTGGTCGGCAACACG GGCAA CACGATGCCGATGACACCG ATGGCCAAAAAGATG Rfer_2580 2840835 - 2839429 - | replicative DNA helicase TERM 2714 2840333 - 2840351 + g 80 -3.8 -5.14965 | CGCGTGCGCGCGCCC TCTTCGCC GAT GTTGAAGA TTTTTTGCTCGGCCT TERM 2715 2841776 - 2841752 - R 100 -18.7 -4.08767 | opp_overlap 2841757, overlap 2841757 GCCACGCTGCCAAAA CAAAAGCCCGC AAA GCGGGCTTTTG TCAGCAGGATGATTT TERM 2716 2841771 - 2841757 - R 100 -12.8 -5.07652 | opp_overlap 2841757, overlap 2841752 GCTGCCAAAACAAAA GCCCGC AAA GCGGGC TTTTGTCAGCAGGAT TERM 2717 2841757 - 2841771 + r 100 -12.8 -4.37092 | opp_overlap 2841757 2841752 GCTGCCAAAACAAAA GCCCGC AAA GCGGGC TTTTGTCAGCAGGAT Rfer_2581 2843860 - 2841863 - | acetate--CoA ligase TERM 2718 2843980 - 2843950 - R 86 -10.4 -4.09923 | opp_overlap 2843950 AACCGAACGAAACAA GCTGTCCGACCC CGCAGTT GGGTCAGACTGC TTTGCGGCTTGCCAA Rfer_2582 2845153 - 2843972 - | Na+/H+ antiporter NhaA TERM 2719 2844249 - 2844226 - G 78 -5.2 -4.75372 | overlap 2844227 AGGACGCACCAAAAA CGCCGATGGG TTTA CCAATCAGCA AGCCAAACGCAATGC TERM 2720 2845887 - 2845874 - g 72 -2.3 -4.85599 | GGCACGGCAGAAAAA GCCGT GCTG ATGGC CAAAGAGAGCCTGAT TERM 2721 2846016 - 2845965 - g 81 -5 -4.92363 | AAACACTGACAAAAA CCGAAGCCTTGCGGATTGAACT ATTGGACA AGGTCAACGCGCTGGGCATCGG CGCGCAGGGCCTGGG Rfer_2583 2845274 - 2846824 + | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha protein TERM 2722 2846870 - 2846903 + T 81 -8.2 -4.37092 | gap 2, opp_overlap 2846858 2846870 GAAGCTCTTGAGCAA CGCTCCCCATGGTGGG TTGA CCCAC--TGAGGAGCG TTTTCTCGGGCCAAT Rfer_2585 2847656 - 2846955 - | ABC transporter related Rfer_2586 2848362 - 2847649 - | ABC transporter related Rfer_2587 2849302 - 2848349 - | inner-membrane translocator Rfer_2588 2850171 - 2849299 - | inner-membrane translocator TERM 2723 2849893 - 2849904 + g 78 -2.2 -5.14563 | GAGGATTAACGAATT GATC TCCC GGTC TTTTTTGATGCGCCC Rfer_2589 2851426 - 2850254 - | extracellular ligand-binding receptor Rfer_2590 2852866 - 2851658 - | L-carnitine dehydratase/bile acid-inducible protein F Rfer_2591 2853732 - 2852926 - | enoyl-CoA hydratase Rfer_2592 2854874 - 2853729 - | acyl-CoA dehydrogenase-like TERM 2724 2854521 - 2854554 + g 74 -5.9 -4.44915 | gap 1, overlap 2854520 CGCGAAAGCCGCGAT GGTGGTGC-CGCCAAT GAT GTCGGCCAGCACCGCC TTTTGTGCATCATTG TERM 2725 2854688 - 2854653 - G 74 -11 -3.55801 | overlap 2854658 2854672 ACCAAGCGCCTCAAA GACCACGGCGATGTCG AAAC CGGCACCGCCGAAGCC GCCATCGGTCTCGCG TERM 2726 2854683 - 2854658 - G 70 -12.5 -2.84325 | overlap 2854653 2854672 GCGCCTCAAAGACCA CGGCGATGTCG AAAC CGGCACCGCCG AAGCCGCCATCGGTC TERM 2727 2854897 - 2854915 + r 77 -4.6 -4.94992 | opp_overlap 2854899, overlap 2854899 CCCTCACAGTCCAAG AATCATCT TGG AGATGATG TTTTTCTGAATTTCA TERM 2728 2854899 - 2854913 + r 74 -7.2 -4.08693 | opp_overlap 2854899, overlap 2854897 CTCACAGTCCAAGAA TCATCT TGG AGATGA TGTTTTTCTGAATTT Rfer_2593 2856093 - 2854885 - | acyl-CoA dehydrogenase-like TERM 2729 2855518 - 2855538 + g 71 -6.9 -4.1822 | opp_overlap 2855518 CGTCATGTCAATCAA CAGGAAG CTGATGC CTTCCTG TTTCTTGGCCTCGCG Rfer_2594 2857286 - 2856105 - | Acetyl-CoA C-acyltransferase TERM 2730 2856631 - 2856676 + g 80 -9.8 -4.00868 | GTACCGCGACGGTTG CAGGTGTCGGCGTCC-ACCGTG ACTT CGCGCTTGGATGC-GACGCCTG TTTCCTTGTCGGTGA Rfer_2595 2859427 - 2857307 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 2731 2860325 - 2860307 - g 84 -3.1 -5.2204 | GAGAATGAAGAAAAA TGGCC GCAAATCAA GGCCA GTCTGGAACAAGCAT Rfer_2596 2859761 - 2860567 + | IclR family transcriptional regulator Rfer_2597 2860702 - 2861517 + | glutamate racemase Rfer_2598 2862081 - 2861539 - | peptide methionine sulfoxide reductase TERM 2732 2862811 - 2862840 + G 86 -15 -3.33696 | opp_overlap 2862808 2862805, overlap 2862808 ATGTGGAAACATTCG CTGGGCGCTTGC TGCGAT GCGGGCGCCCAG TTGGTTCCCGAAGAC Rfer_2599 2862244 - 2862945 + | TetR family transcriptional regulator Rfer_2600 2862942 - 2864072 + | secretion protein HlyD TERM 2733 2865431 - 2865479 + G 83 -2.3 -5.19261 | opp_overlap 2865421, overlap 2865433 2865442 AACGACGATGTCAAT CGTGGCGGTGTTCCTGCCCAT TGGTTTC ATGGGCGGCATCATTGGCAAG TTTTTTCATGAGTTT TERM 2734 2866737 - 2866715 - g 73 -4.8 -4.72272 | TGGCTCCACCAAAAA CATGGCCGAA TCA TTTGGCTATG CGATCTCGGCGCTGG TERM 2735 2867271 - 2867249 - g 72 -11.2 -3.28712 | overlap 2867263 CTGGGGTGCTGATAA CAGCACCGAC GAA GCCGGCGCCG GGTAAAATTTTGCAG Rfer_2601 2864076 - 2867276 + | acriflavin resistance protein Rfer_2602 2867327 - 2867980 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase Rfer_2603 2867993 - 2868334 + | rhodanese-like protein TERM 2736 2869217 - 2869206 - g 72 -2.2 -4.81249 | gap 1 CTGGAAACCCAAAAA GCGCG GGC CG-GC CATAAGCCAACACTT Rfer_2604 2868402 - 2869730 + | Type I secretion outer membrane protein, TolC Rfer_2605 2870250 - 2869756 - | hypothetical protein Rfer_2606 2871521 - 2870334 - | aminotransferase, class I and II TERM 2737 2871170 - 2871157 - G 77 -3.8 -5.00884 | ATGGTGGCCAAAAAA GTGG GCGCTT CCAC AATCACCTTGTCGCC TERM 2738 2872215 - 2872254 + G 75 -7.6 -4.14392 | overlap 2872200 GCGCTATGTGTGCCA GGCGCGCAAGCCGCTGTG TTGG CAGTGCGCCGTGAGCGCC TTTTGCGACTTCAAG Rfer_2607 2871652 - 2872305 + | endonuclease III TERM 2739 2872446 - 2872458 + G 88 -6.9 -4.87803 | overlap 2872441 CTGGGTGACTGGTCG GCGGC CTT GCTGC TTTTGTTTGCGGGTG TERM 2740 2872849 - 2872865 + G 78 -2.2 -5.02074 | CGTTCTCCGCGCCCT TTCCGC TCAAT GCCGAA TTTTTTGACACCTCA Rfer_2608 2872320 - 2873462 + | diguanylate cyclase Rfer_2609 2874009 - 2873464 - | phosphoglycerate mutase TERM 2741 2873979 - 2873961 - G 80 -11 -3.74693 | CGGCACCGTAGCAAA CCCCCGAT GGA ATCAGGGG TTGCGCATGACGCAC Rfer_2610 2874868 - 2874026 - | cobalamin-5-phosphate synthase CobS Rfer_2611 2876305 - 2875217 - | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase TERM 2742 2875790 - 2875817 + g 75 -7.6 -4.21275 | overlap 2875791 2875814 CAGCAGCGCGTTGCC GGGCAAGGCCTT GACC AGGGCCATGCCA TTTTGAATCGCTTGC TERM 2743 2876386 - 2876368 - R 89 -13.8 -3.65046 | CCGTCAGGTCAACAA GCCGGGCA AAA CGCCCGGC TGGAAATGCAGCTCG Rfer_2612 2877840 - 2876356 - | cobyric acid synthase CobQ Rfer_2613 2878309 - 2877866 - | putative 6-pyruvoyl tetrahydropterin synthase TERM 2744 2878077 - 2878053 - G 71 -6.3 -4.37092 | overlap 2878054 ATGCTGTCCAGAAAA TCACGCACCAC GGT GTCGTGCGCGT AGACGATGAAGGCGT TERM 2745 2878259 - 2878287 + g 81 -6 -4.82667 | overlap 2878260 CTGGCTCTTGTGGTC GGGAATGCGATG ACCGG CATCGAATTCCA TTTTTCGTGTGATGG Rfer_2614 2878976 - 2878341 - | organic radical activating-like protein TERM 2746 2878971 - 2878984 + g 70 -4.5 -4.46835 | TTCTTTGACACTGTA GGTCA TGCT TGGCC TTTGTTTACGGTTGT Rfer_2615 2880034 - 2878973 - | aminotransferase, class I and II TERM 2747 2879492 - 2879440 - G 74 -6.7 -4.36914 | overlap 2879441 2879451 TGTTGGGCGAGAAAA GCTGCCAGACACGCCCACGCTGCGC GTC GCTCAGGCTGGGCGTGCCACCCAGG CGCAGCGGCGCGTAG TERM 2748 2879732 - 2879773 + g 90 -15.1 -3.53091 | gap 1 GCCATAGCCATGGCG GGGCA-GGCACACGGTGCGC GGT GCCTGCCGGGTGCCCTGCCC TTTGACCCACGCCGT TERM 2749 2879963 - 2879926 - G 72 -11.3 -3.28712 | gap 1, opp_overlap 2879926 2879933 CGGCGGCCTGCACAA CAGCCAAGGCCTGCGGGC ACG GGCCACAGGCGTTG-CTG TTGCTGGAAAAGTCG Rfer_2616 2880993 - 2880031 - | cobalamin biosynthesis protein CobD TERM 2750 2880147 - 2880114 - G 82 -11.7 -3.92373 | gap 1, overlap 2880115 2880117 TATTTGATGCATAAA CCAGGGCTTGCGC-GG TAT CCTGCGCAAGCGCTGC GCGCCCCGCTGGGTT TERM 2751 2880146 - 2880115 - G 79 -15.2 -2.95102 | gap 1, overlap 2880114 2880117 ATTTGATGCATAAAC CAGGGCTTGCGC-GG TAT CCTGCGCAAGCGCTG CGCGCCCCGCTGGGT Rfer_2617 2881720 - 2881007 - | Cob(II)yrinic acid a,c-diamide reductase TERM 2752 2881148 - 2881125 - G 74 -6 -4.56597 | gap 1, overlap 2881126 2881128 GGTTCCTCGTAAAAA GC-ATGCACCG GCC CGATGCACAGC AGCGCGATCGGCTCG TERM 2753 2881744 - 2881775 + r 70 -9.5 -3.37487 | gap 2, overlap 2881743 CTCAGTCCTCGATGC CGCGTT--GGGCCGG AATG CCGGCCTGGAACGCG TGTTTGACCATCTGC Rfer_2618 2882299 - 2881730 - | cob(I)alamin adenosyltransferase Rfer_2619 2883122 - 2882358 - | ABC transporter related TERM 2754 2882883 - 2882897 + g 95 -7 -5.40474 | overlap 2882885 TTGCCCGAGCCACGC CAGGCG CTG CGCCCG TTTTTTTGGGCGAAT Rfer_2620 2884195 - 2883119 - | transport system permease protein Rfer_2621 2885091 - 2884192 - | periplasmic binding protein TERM 2755 2884597 - 2884587 - G 73 -4.6 -4.67048 | opp_overlap 2884590, overlap 2884588 2884589 TCACCTCAAAATAAA CCCG CGT CGAG GCGACGCTTTTGGGC TERM 2756 2884590 - 2884604 + g 84 -11.4 -4.07687 | opp_overlap 2884587 2884589 2884588 CCTCAAAATAAACCC GCGTCG AGG CGACGC TTTTGGGCAAGGACT TERM 2757 2884863 - 2884873 + g 70 -3.2 -4.64657 | overlap 2884830 CCAGCCCGCCGCCGA CTTG GGC CAGG TTTTTGACGCTTTCG Rfer_2622 2885720 - 2885088 - | cobalbumin biosynthesis enzyme TERM 2758 2885329 - 2885339 + g 75 -2.6 -4.9792 | GGGGCTAAAGGCCTG TTTA TTA TAAA TTTTTCTGTAACGTC Rfer_2623 2886595 - 2885717 - | periplasmic binding protein TERM 2759 2886482 - 2886492 + g 71 -6.8 -4.21974 | opp_overlap 2886481 CCCCAGCAAGTACAG CCAC TCG GTGG TTTCTTCGGTCATGC Rfer_2624 2887983 - 2886592 - | CobB/CobQ-like glutamine amidotransferase TERM 2760 2886857 - 2886868 + g 71 -7.2 -4.21194 | overlap 2886844 TGCTGCGGCCCCAAG GCGG CCAG CCGC TTTTGCATGGTCACG TERM 2761 2887229 - 2887186 - G 84 -3.1 -5.23292 | gap 3, overlap 2887187 GTAGATAAAACAAAA CGCCGC-ATCA-CGCGCCACCG CCA CGGTG-CGCCCTGCCAGCGGCA AACCAATTGAAACAG TERM 2762 2887746 - 2887703 - G 71 -9.5 -3.80573 | gap 2, opp_overlap 2887731, overlap 2887704 TCGACGAGGATCAAA TCCGCCT-CC-CGCGCCGCTG CCGC CAGCCGCGCGAGGCAGTCGGC CTCGCCATTGATCCA TERM 2763 2887745 - 2887704 - G 70 -13 -2.88023 | gap 2, opp_overlap 2887731, overlap 2887703 CGACGAGGATCAAAT CCGCCT-CC-CGCGCCGCTG CCGC CAGCCGCGCGAGGCAGTCGG CCTCGCCATTGATCC TERM 2764 2888016 - 2887975 - G 76 -14.5 -2.66316 | gap 1, opp_overlap 2887976, overlap 2887972 2888004 CCGTTCATGAGACGA GTCCGTCATGCGGGTGGCTT AAA AAGCCACCCGCATAGCCG-C AGTGACAGCACGTCC Rfer_2625 2889966 - 2887993 - | TonB-dependent receptor Rfer_2626 2890336 - 2890566 + | hypothetical protein Rfer_2627 2890563 - 2890916 + | hypothetical protein TERM 2765 2891121 - 2891138 + F 73 -5.5 -4.63172 | TCAGGATGCCGGTCC GGTGACT CTGC AGACACC TTTTCTCCTTTCCTC TERM 2766 2891583 - 2891559 - g 83 -2.7 -5.24129 | overlap 2891560 TTTCTGGACAAAAAA CCCGCACCCAC ACG ACAAGTGCCGG GTACTGCTGGCCTGA TERM 2767 2891604 - 2891621 + G 76 -9.1 -4.0371 | overlap 2891595 GCTGGCCTGATTGGC GCCGGTG GCGT CATCGGC TTTCTGTCGGGACTG Rfer_2628 2891163 - 2891981 + | hypothetical protein Rfer_2629 2894412 - 2892004 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2768 2892722 - 2892764 + g 75 -7.6 -4.25104 | opp_overlap 2892703 2892702 2892729, overlap 2892723 GGCTGGTAGTGCAGC CGGAACATGCCCTGCTCC ATGGCCC GGCGCATGGCATGGTCCA TTTTCATGCGCGACA TERM 2769 2893085 - 2893039 - G 71 -5.9 -4.2928 | overlap 2893033 2893064 CACAAAAATGACAAA GTCGTCGCCACCGA-GCCGACAC AAG GTGTCGGCGTCG-CGCAAACAAC GTTTGATGCGCTCCG Rfer_2630 2895716 - 2894409 - | metal dependent phosphohydrolase TERM 2770 2895794 - 2895774 - H 72 -2.6 -4.9792 | opp_overlap 2895774 2895785, overlap 2895776 TATTTGACACAAAAA TTTTCATC TGACG GATGAACA CTTCCTCCGTATGCT TERM 2771 2896335 - 2896349 + G 78 -6.4 -4.67353 | GGCCCGACTACTCCA TTGCCG ACA TGGCAA TTTTTCCCTGGATCC Rfer_2631 2895851 - 2896570 + | glutathione S-transferase-like Rfer_2632 2896583 - 2897194 + | DSBA oxidoreductase Rfer_2633 2897194 - 2897961 + | spermidine synthase-like Rfer_2634 2898608 - 2897970 - | 3-oxoacid CoA-transferase, subunit B Rfer_2635 2899330 - 2898611 - | 3-oxoacid CoA-transferase, subunit A TERM 2772 2898994 - 2898981 - G 76 -5.9 -4.65895 | GTGCGGACGTAAAAA GCCGG AATG CCAGC ACCACCGGCGCGCAG Rfer_2636 2899355 - 2899975 + | LuxR family transcriptional regulator TERM 2773 2900114 - 2900141 + T 83 -6.2 -4.86731 | gap 1, overlap 2900114 2900115 2900128 CGGGCTCGACGCAGC T-GCCGCCACCTG GAC CCGGTTGCGGCCA TTTTCTTTAGCCAGG Rfer_2637 2902129 - 2900093 - | diguanylate cyclase with PAS/PAC sensor Rfer_2638 2902292 - 2903521 + | methyltransferase small Rfer_2639 2903810 - 2904055 + | hypothetical protein Rfer_2640 2904105 - 2904530 + | RNA-binding S4 Rfer_2641 2906965 - 2904575 - | DNA topoisomerase IV subunit A TERM 2774 2904633 - 2904653 + g 88 -13.9 -3.63515 | GCCACCTTGCCTTTG CGCCCGCGC AGC GCCCGGGCG TTGTTGAGGCTGCGG TERM 2775 2904956 - 2904934 - G 74 -7 -4.37092 | overlap 2904936 2904955 ACGGCCGGCACAAAA TTTCACCTGC ATT GCAAGTGACA AAGGCTTTGCCCGCT Rfer_2642 2909040 - 2907070 - | DNA topoisomerase IV subunit B Rfer_2643 2909616 - 2909116 - | hypothetical protein TERM 2776 2909143 - 2909162 + g 78 -2.8 -5.14563 | gap 1, overlap 2909133 2909149 GGTGGTGGCCGGAAA TCCG-GGCG TGC TGTCACGGA TTTTTTCATCCAGCA Rfer_2644 2910760 - 2909606 - | cupin 4 TERM 2777 2910227 - 2910249 + g 71 -8.4 -4.07687 | CAGCACAAACTCTTC TTCCGGCTCA AAG TGGGCCAGAA TTTTCAAGGGCACGT TERM 2778 2911288 - 2911299 + G 78 -7.2 -4.62471 | opp_overlap 2911275 ATTGGCCGCGGATCG GCCG GTAC CGGC TTTTTCAGGATTCAG Rfer_2645 2910823 - 2911356 + | fkbp-type peptidyl-prolyl cis-trans isomerase Rfer_2646 2911896 - 2911447 - | deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) Rfer_2647 2913118 - 2911883 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase Rfer_2648 2913231 - 2914898 + | CTP synthetase TERM 2779 2915219 - 2915232 + G 72 -2.3 -4.82901 | opp_overlap 2915227 CGGTGGTGGACGTGT TGCAG ACAC CCGCA TTTTTGTGCCGGCAA Rfer_2649 2914900 - 2915757 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 2780 2916332 - 2916345 + G 75 -8.1 -4.25283 | TTCATGATCATCCCG CTGGG CGCC CCCAG TTTTCGTGAGGCCCT eno 2915825 - 2917108 + | phosphopyruvate hydratase TERM 2781 2917273 - 2917250 - g 72 -3 -4.85599 | overlap 2917232 2917234 2917252 2917253 2917261 CTCAGTTCACAAAAA GAGCTGAACC AGCA GGCACAGCTT GCCAACGACCGACTC TERM 2782 2917352 - 2917340 - g 78 -2.6 -5.06816 | overlap 2917342 ATGGTCGAAGAAAAA GCCC GCATG GAGC TCGGCATGGTCAAGC Rfer_2651 2917124 - 2917423 + | septum formation initiator Rfer_2652 2918429 - 2917440 - | Hsp33 protein TERM 2783 2917658 - 2917648 - G 72 -2.4 -4.72986 | overlap 2917649 2917650 CAGGTGCAGGAAAAA TGCG GCG CGCT GTCCCCCGCCAAAGG TERM 2784 2917999 - 2918027 + g 77 -11.1 -3.61398 | gap 1, opp_overlap 2918007, overlap 2917999 TTCTCCCGTGCATCA CCC-ACCAAGGG CACCAC CCCTTGGTAGGG TTGTTGACCCGGAAA Rfer_2653 2919024 - 2918500 - | transferase hexapeptide protein Rfer_2654 2920003 - 2919083 - | tyrosine recombinase XerD Rfer_2655 2920051 - 2921049 + | auxin efflux carrier Rfer_2656 2923929 - 2921107 - | hypothetical protein TERM 2785 2921713 - 2921752 + g 85 -9.2 -4.72272 | gap 1, overlap 2921714 ACCTTCTTTGCGGTC G-CCGAACTTGCCGCCACG CAT CATGGGGGCAGGCTCGGTC TTTTTCATGCCCGGA TERM 2786 2921714 - 2921750 + g 86 -12.9 -3.98256 | overlap 2921713 CCTTCTTTGCGGTCG CCGAACTTGCCGCCACG CAT CATGGGGGCAGGCTCGG TCTTTTTCATGCCCG TERM 2787 2922622 - 2922634 + g 70 -10.5 -3.45031 | overlap 2922618 CTGCGCCCGATGCTC GGCCG ACT CGGCC TTGACTTTTTCCAGC TERM 2788 2923666 - 2923680 + g 70 -4.3 -4.56597 | CTGGCTCTTGCTGCG CTTGA TCTCT TCAAG TTTTTCACGCAGCAG Rfer_2657 2924375 - 2925178 + | lytic transglycosylase, catalytic TERM 2789 2926109 - 2926090 - g 89 -10 -4.43844 | gap 1 GCACCACCCACAAAA GCCTGCGCG GCC CGCG-AGGC GGCATCATTTTGATG Rfer_2658 2925402 - 2926646 + | serine hydroxymethyltransferase Rfer_2659 2926772 - 2927221 + | transcriptional regulator NrdR TERM 2790 2927414 - 2927443 + G 100 -14.9 -4.8143 | opp_overlap 2927433 TGCAACACCCATTCG CCGCCCTGCACCC AATC GAGCGCAGGGCGG TTTTTCCATTGTTGA Rfer_2660 2927373 - 2927990 + | methylation Rfer_2661 2927990 - 2929015 + | putative transmembrane protein Rfer_2662 2929012 - 2929638 + | putative transmembrane protein TERM 2791 2931706 - 2931691 - g 84 -10.4 -4.15044 | opp_overlap 2931704 GCGTCGTGGAAGAAA CCGGCA GTAT TGCCGG CGGCGCCATTTCGAC TERM 2792 2933086 - 2933101 + G 77 -3.2 -5.00616 | overlap 2933087 CCATCACCGGCGAGC CCGTTG TCAT CAACGC TTTTTTCGACAGCAA Rfer_2663 2929644 - 2933729 + | putative type-4 fimbrial biogenesis pily1-related signal peptide protein Rfer_2664 2933744 - 2934226 + | methylation Rfer_2665 2934237 - 2934806 + | methylation Rfer_2666 2934843 - 2935976 + | riboflavin biosynthesis protein RibD Rfer_2667 2936199 - 2936843 + | riboflavin synthase subunit alpha Rfer_2668 2936885 - 2938024 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 2793 2938053 - 2938039 - g 70 -10 -3.45634 | overlap 2938042 ACGCGAACCAAGGAA CACTGG CCG CCAGTG ACAGCCGCCTGAACG TERM 2794 2938447 - 2938433 - g 85 -7 -4.78848 | overlap 2938434 2938435 CCGCCAAACAGAAAA GGGGCG CGA CGCCGC CCGCGTTGCCGTTGA ribH 2938017 - 2938490 + | riboflavin synthase subunit beta Rfer_2670 2938490 - 2939023 + | NusB antitermination factor TERM 2795 2939944 - 2939985 + G 76 -9.3 -4.11216 | gap 1, overlap 2939945 TTCATACCGGAGCTC AACGCCCTCGGGC-TCACCG TGC CGGTCATGCCCGATGGCGCC TTTTACGCCTGGGCC TERM 2796 2939945 - 2939984 + G 72 -12.8 -3.06515 | gap 1, overlap 2939944 TCATACCGGAGCTCA ACGCCCTCGGGC-TCACCG TGC CGGTCATGCCCGATGGCGC CTTTTACGCCTGGGC Rfer_2671 2939020 - 2940213 + | aminotransferase Rfer_2672 2940210 - 2940902 + | MotA/TolQ/ExbB proton channel TERM 2797 2941169 - 2941150 - g 83 -4.2 -5.11112 | overlap 2941151 2941154 AAAGTGCAAGAAAAA TCCAGCCC ACTG GGGCTCAA AGACCTTGCCAGCGC Rfer_2673 2940916 - 2941335 + | biopolymer transport protein ExbD/TolR TERM 2798 2941749 - 2941726 - g 78 -6.7 -4.67173 | overlap 2941743 GAACTCAAAAAACAA CAAGCACTG GACAAA CAGCGCCTG GAAAAGCAGCGCCTT TERM 2799 2941836 - 2941818 - g 85 -7.4 -4.84359 | GCAGCTTGAGAAAAA GCGCTTGC AAG ACAAACGC GAAAGCGACAAAAAA TERM 2800 2941941 - 2941930 - g 71 -5.8 -4.40804 | overlap 2941917 GAGGACGCCAGAAAA CTGG CTGC CCAG CGCAAAGCCAATATC Rfer_2674 2941345 - 2942298 + | TonB-like Rfer_2675 2942396 - 2943124 + | undecaprenyl diphosphate synthase TERM 2801 2943754 - 2943716 - g 79 -8.2 -4.4727 | opp_overlap 2943751 TGAACACCGACAAAA CCAACAGCGAAAGCTT TCGGGCC AAGCTCCCACCGCTGG GAACCAACCAGTTTG TERM 2802 2945106 - 2945122 + G 72 -2.9 -4.81551 | TCTCACGCTGCAAGC TGGCGAT GTG GTCACCA TTTTTAGTGTCAATG Rfer_2676 2943385 - 2945934 + | polysaccharide export protein TERM 2803 2946372 - 2946412 + G 89 -4.6 -5.24129 | gap 1, opp_overlap 2946384 CATTGGCCGCGAGTT TGTGGCCAACCAGC-CCAG CGCC CTGGTGCTGGGCGACAACA TTTTTTATGGACACG Rfer_2677 2946076 - 2946954 + | glucose-1-phosphate thymidylyltransferase Rfer_2678 2946962 - 2947513 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 2804 2947775 - 2947804 + G 82 -12.9 -3.61988 | gap 1, opp_overlap 2947770, overlap 2947771 GGGTCGAGAACTGGG TCGCCATCCAC-GG CAA CCAGTGGCTGGCGA TTGGTTTGTCGCTGG TERM 2805 2947886 - 2947912 + G 100 -13 -4.55798 | overlap 2947876 2947904 GCTATGCCGGGTTAA CCGCCTTGCTGG CGG TCACCAAGGCGG TTTTGGTTTACGGTG Rfer_2679 2947642 - 2949585 + | polysaccharide biosynthesis protein CapD Rfer_2680 2949665 - 2949970 + | hypothetical protein TERM 2806 2950688 - 2950698 + T 74 -8.2 -4.03413 | ATAACACATTCATAC CGGC GAA GCCG TTTGTGTGGACCCAT TERM 2807 2951316 - 2951285 - T 100 -13.8 -6.36459 | opp_overlap 2951285 TGGAATAAAAAAAAA GGGCTTGCCACTAC TTTC ATAGCGGCAAACCC TTATGTACTGGCGGA Rfer_2681 2953156 - 2951768 - | glutamyl-tRNA synthetase TERM 2808 2952782 - 2952797 + g 85 -6.8 -4.86731 | gap 1 CGCGGGGCGCCAGGT GCCGTCG TAA CG-CGGC TTTTCTTTGGCAGCC TERM 2809 2952894 - 2952870 - G 70 -10 -3.55824 | gap 1, opp_overlap 2952890, overlap 2952868 TAGCAGGGATAAACA TGGCCG-GCCG CCTG CAGCTCGGCCA ACACGGTCTTGTAGC Rfer_2682 2954376 - 2953153 - | O-succinylhomoserine sulfhydrylase TERM 2810 2953248 - 2953275 + g 76 -14.2 -3.05384 | opp_overlap 2953243, overlap 2953250 2953254 TGCGAATCAAGCCCT GACCGATGCCAG CGGC CTGGCGTTGGTC TTCGGTGAGACGACC TERM 2811 2954131 - 2954098 - G 72 -13.2 -2.50016 | gap 1, opp_overlap 2954098 2954094, overlap 2954095 GCCCAGCAGCAACAC GGCCGCCAT-GCCAC TGCTG GTGGCAATCGCGGCC TCGGTTCCTTCCAGC TERM 2812 2954098 - 2954131 + g 72 -13.9 -2.60244 | gap 1, opp_overlap 2954095 2954098, overlap 2954094 GCCCAGCAGCAACAC GGCCGCCAT-GCCACT GCT GGTGGCAATCGCGGCC TCGGTTCCTTCCAGC Rfer_2683 2955878 - 2954373 - | amidophosphoribosyltransferase TERM 2813 2954844 - 2954855 + g 75 -2.2 -5.00616 | GATCACATTGAGCTT TTGG CGCA CCGA TTTTTTGCGAACCGA TERM 2814 2955166 - 2955131 - G 78 -4.6 -4.75356 | gap 1, opp_overlap 2955135, overlap 2955132 AAACATATTCAAAAA TGCAG-GGGCTGAGCAC CGG ATGCTCGGCACACTGCT GTGCATGCACCTTGC TERM 2815 2955379 - 2955334 - G 71 -7.4 -4.25848 | overlap 2955338 AACGGGTCACGAAAA GCCAGCACGCCATGGCCGGC GATCAT GGCGATCACGGCGTACGAGC CCTTGATGCGCTGAT Rfer_2684 2956433 - 2955945 - | colicin V production protein Rfer_2685 2957234 - 2956461 - | sporulation related TERM 2816 2956897 - 2956910 + g 74 -3.7 -4.75372 | GATTCATATTCCACG GGGGC TGCT GCCAC TTTTTGCTCACTACT TERM 2817 2957007 - 2957022 + g 81 -4.7 -4.87273 | AGGCGCGGGAATACT CAAGG GCAGGA CCTTG TTTTTGTCGGGTATT Rfer_2686 2958580 - 2957255 - | FolC bifunctional protein TERM 2818 2957996 - 2958014 + g 71 -6.6 -4.2558 | CACCACCGGGCGGCC GGTGCGCA TGA TGCCCGCC TTTTCGTAGCCAATG Rfer_2687 2958621 - 2959016 + | hypothetical protein Rfer_2688 2959082 - 2959399 + | hypothetical protein Rfer_2689 2959466 - 2960809 + | argininosuccinate synthase Rfer_2690 2961789 - 2960830 - | NAD-dependent epimerase/dehydratase TERM 2819 2961485 - 2961508 + g 89 -10.3 -4.56597 | gap 1, opp_overlap 2961471 ACGCGCTTGACACCG GCT-GCCCGG CAAGC CCGGGCCAGC TTTTTCGGCAAGGCG Rfer_2691 2962949 - 2961843 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 2820 2962586 - 2962564 - G 76 -12.7 -3.3334 | AACTCCACGCCATAA GCGCCGATG TTCTG CACCGGCGC CGCGCCGACGGTGCC Rfer_2692 2963077 - 2963562 + | nucleotide-binding protein Rfer_2693 2963584 - 2964543 + | HD-GYP domain-containing protein Rfer_2694 2965310 - 2964609 - | amidotransferase Rfer_2695 2965981 - 2965307 - | hypothetical protein Rfer_2696 2966517 - 2966032 - | YbaK/prolyl-tRNA synthetase associated protein Rfer_2697 2967696 - 2966632 - | aldo/keto reductase TERM 2821 2966813 - 2966792 - G 70 -3.6 -4.72272 | gap 1, overlap 2966757 2966793 2966796 TTGGTGTAGCAAAAA GCCAG-CGC CAACT GCGTCGGGC TCAAGCCGTGCGCAC TERM 2822 2967419 - 2967451 + g 84 -11.2 -4.07568 | gap 1, opp_overlap 2967406, overlap 2967380 2967415 CACGGCATGCTGCGC GCCGG-GCCGGCCAC TTTG GTGGCCAGCACCAGC TTTTGCCGCGCACCG Rfer_2698 2969570 - 2967759 - | AMP-dependent synthetase and ligase TERM 2823 2968643 - 2968629 - G 89 -4.2 -5.27335 | overlap 2968631 GGTCGGAAACAAAAA CGTGTG CGT CACATG GCAGTCGCGCATCAG TERM 2824 2968884 - 2968849 - G 79 -9 -4.25104 | GCGGCGGGATCAAAA CCAAACCAGTTTTGGC TGCA GACAAAACCGGTCAGG TTCCCGATCAGGGCG Rfer_2699 2969596 - 2970495 + | alpha/beta hydrolase Rfer_2700 2970603 - 2971958 + | hypothetical protein TERM 2825 2972110 - 2972129 + F 89 -13.6 -3.5525 | ACCCAACTCTCCGAC CTGAGCGC ACGC GCGCTCAG TTTACGGGGGTATCT TERM 2826 2972246 - 2972225 - f 83 -12.3 -3.63895 | gap 1 TGGAACGACCCCAAA CGC-GCCCAG GAA CTGGGCCGCG AGAAAAAAGCGCTCG TERM 2827 2973477 - 2973500 + G 77 -11 -3.57971 | gap 1 CGGCTTCAAGACCTT CTCCGGG-CAG GCG CTGGCCCGGGG TTTGAAAGTGGCTGT TERM 2828 2973623 - 2973607 - g 74 -12.3 -3.14132 | opp_overlap 2973596 GTGGGCGGCGACGAA GGCTTGC CCG GCAAGCC CGAGCCCGCTATATT Rfer_2702 2973169 - 2973867 + | HAD family hydrolase TERM 2829 2976487 - 2976455 - g 84 -5.6 -5.0133 | gap 1 GACCGCTGGAAAAAA CTGGCGGAGCC CTATCGCAGCTC GGC-CCGCCAG GCGATTGAACGGGTC Rfer_2703 2973851 - 2976565 + | peptidase M1, alanyl aminopeptidase TERM 2830 2977037 - 2977051 + G 70 -4.2 -4.56597 | CCGGACGGCCAGGGG GTGCTG GAG CAGGAC TTTTTGCAACCCGGC TERM 2831 2977498 - 2977481 - g 78 -10.5 -3.88232 | TGGCTGATAGAACAA GCCGGCG GCGC CGCCAGC ACCGGCAAACAGCGC TERM 2832 2977547 - 2977558 + G 70 -3.6 -4.62069 | opp_overlap 2977538 GGCAAACTGCACGAG CGCG TGAG CGTG TTTTTGGGCTCCAAA Rfer_2704 2976611 - 2977615 + | fructose-1,6-bisphosphatase TERM 2833 2977765 - 2977734 - f 78 -11.7 -3.19889 | opp_overlap 2977734 CACCAATAGATTCAA GGGTTTGTTGCTA TTAACT TAGCAGCAAACCC TTTCTCTTTGGGGCA TERM 2834 2977734 - 2977765 + F 100 -13.9 -4.32857 | opp_overlap 2977734 CACCAATAGATTCAA GGGTTTGTTGCTA TTAACT TAGCAGCAAACCC TTTCTCTTTGGGGCA TERM 2835 2978939 - 2978911 - g 93 -16.1 -3.53012 | opp_overlap 2978921 GTTGGTGGCGCTAAA GCCGCAGCTACTG CCG CAGTAACTGCAGC GGTTCCTGCGCAAAT Rfer_2705 2978308 - 2979597 + | putative lipase / esterase protein TERM 2836 2980394 - 2980372 - g 85 -7 -4.78848 | TCGCTAAATATAAAA CTGCCTGACA GCT TGTCAATCAG CGGCTTCCATCAATA TERM 2837 2980592 - 2980569 - g 70 -10.2 -3.44794 | opp_overlap 2980577 2980588 AACGTATCATTACAA CCAGCACTGG TTGG CCCGTGCCGG CCTGGCTTATGACCA Rfer_2706 2979637 - 2980839 + | membrane protein involved in aromatic hydrocarbon degradation TERM 2838 2980860 - 2980844 - f 74 -2.2 -5.02476 | ATAGCTTTTAAAAAA TGACCT GAGCA AGGGCA ATCGGGACAGAGACA Rfer_2707 2980902 - 2981171 + | hypothetical protein Rfer_2708 2981324 - 2982190 + | transposase IS3/IS911 Rfer_2709 2982244 - 2982648 + | transposase IS3/IS911 Rfer_2710 2982657 - 2982992 + | IS66 Orf2 like TERM 2839 2984228 - 2984202 - g 73 -5.1 -4.63479 | CAGGAGAAATCAAAA CCACTGCTGGA TGCCT TGCACCAGTGG ATGATCCTGAACCGC Rfer_2711 2983074 - 2984594 + | transposase IS66 Rfer_2712 2984627 - 2984860 + | hypothetical protein TERM 2840 2985264 - 2985287 + T 71 -9.6 -3.57144 | AGTAAGTAGTTGATT TGTAGGGACA GTAG TGTCCCAACA TTTGCACATCAGGAC Rfer_2714 2987111 - 2985756 - | Type I secretion membrane fusion protein, HlyD Rfer_2715 2996191 - 2987111 - | VCBS TERM 2841 2991854 - 2991815 - G 71 -9.2 -3.70902 | gap 1, opp_overlap 2991843 GTTCTGATACTCAAA GTGGATCCAGAAGCGCCCG TTC CAGGC-CCACTGGTCCCAC CACTGTGTTGACGAG TERM 2842 2992688 - 2992670 - G 77 -11 -3.6502 | overlap 2992653 GAGGGTGTAGTCAAA CGACACCG TCA CGGTATCG CGCCCTCCGCCCTCC Rfer_2716 2996913 - 2996194 - | hypothetical protein Rfer_2717 2998475 - 2996979 - | hypothetical protein TERM 2843 2997247 - 2997290 + g 70 -3.1 -4.64861 | gap 2 CCATAGGCACCATGG GCTGCTGCCATGGGGTCGAGC CAGA GCTTGGCGT-A-GGCGGCGGC TTTGTTTTGCGCGCC TERM 2844 2998238 - 2998275 + g 71 -6.9 -4.25104 | opp_overlap 2998259, overlap 2998240 AAGTGTTGAACTCGG TGCCGCCATAGCTGATG ACAA CTTCGCCTGTGGCGGTG TTTTGGTAGACGCGG TERM 2845 2998240 - 2998273 + g 71 -9.5 -3.73042 | opp_overlap 2998259, overlap 2998238 GTGTTGAACTCGGTG CCGCCATAGCTGATG ACAA CTTCGCCTGTGGCGG TGTTTTGGTAGACGC Rfer_2718 2999089 - 2998472 - | hypothetical protein TERM 2846 2998521 - 2998544 + g 70 -3.8 -4.63527 | gap 1, overlap 2998524 2998526 2998527 TGAATGATTAGGCCG TTGTCTCCCGC TGC GCGGG-GATTA TTTTTCCAGTGCTCC TERM 2847 2998524 - 2998541 + g 77 -7.7 -4.42748 | gap 1, overlap 2998521 2998526 2998527 ATGATTAGGCCGTTG TCTCCCGC TGC GCGGG-GA TTATTTTTCCAGTGC Rfer_2719 3001476 - 2999086 - | hemolysin-type calcium-binding protein Rfer_2721 3003648 - 3002311 - | glycosyl transferases related to UDP-glucuronosyltransferase-like TERM 2848 3003002 - 3002977 - G 71 -5.3 -4.39002 | overlap 3002980 3002981 AAATTCTGTAGAAAA CAAGGGGCCGA TGTA TCGGCCCTGTA GCCGTGGCCCAAAGT TERM 2849 3002999 - 3002980 - G 82 -9.2 -4.30995 | overlap 3002977 3002981 TTCTGTAGAAAACAA GGGGCCGA TGTA TCGGCCCT GTAGCCGTGGCCCAA TERM 2850 3002998 - 3002981 - G 74 -12.7 -3.18115 | overlap 3002980 3002977 TCTGTAGAAAACAAG GGGCCGA TGTA TCGGCCC TGTAGCCGTGGCCCA Rfer_2722 3005837 - 3003645 - | ABC transporter related TERM 2851 3005215 - 3005192 - G 77 -8.2 -4.30576 | gap 1, overlap 3005194 TGGCCACCATGAAAA TCGCCA-TGCC GAC GGCAATGGCAA TCAAGGTGCTCTGGG Rfer_2723 3006202 - 3006603 + | membrane protein of unknown function Rfer_2724 3006619 - 3006882 + | hypothetical protein TERM 2852 3007188 - 3007165 - g 74 -7.4 -4.39426 | gap 1, opp_overlap 3007169, overlap 3007169 GACACCCGCACAAAA GCCAC-CGGCC GAT GACCGCATGGC CGCCTTTGTGTCCAC TERM 2853 3007225 - 3007238 + G 76 -6.7 -4.56597 | GGCCGACACCGAGGA CGTCT GGAA AGACG TTTTTGCCAAGAGCG TERM 2854 3007437 - 3007402 - g 70 -3.4 -4.64657 | gap 1, opp_overlap 3007404, overlap 3007404 CGAAACTCTGAAAAA CAGGCTTGGTGCA CCCGGTGATTT TGC-CCAAGCCTA TGTGATTGCCCACGA TERM 2855 3007738 - 3007753 + G 76 -10.4 -3.72893 | overlap 3007728 CCACGGCACCAGCGC CCAGCG CCAG CGCTGG TTTGATGCGGGGCTC Rfer_2725 3006932 - 3007819 + | protein of unknown function, zinc metallopeptidase putative TERM 2856 3008551 - 3008567 + G 75 -13.7 -2.83894 | GAGTGGGGCTACGGA CCCAGCG GTG CGCTGGG TCTGGTGGTGGTCAT Rfer_2726 3008425 - 3008616 + | hypothetical protein TERM 2857 3008867 - 3008894 + G 75 -2 -4.9218 | gap 1, overlap 3008866 3008849 CGCGTGAACGCGTTC GCCAGCGGC CTTGATCACCC GC-GCTGGC TTTTTGTACTACCTA Rfer_2727 3008645 - 3009961 + | L-sorbosone dehydrogenase Rfer_2728 3012456 - 3009982 - | serine/threonine protein kinase TERM 2858 3011148 - 3011116 - G 71 -9.1 -3.74693 | overlap 3011119 CCCCAGGTTATGAAA CATGGCGCCAAGAAA AGC TTCCTCGGTGCCCTG CATCCCCGGGCAAAG TERM 2859 3011542 - 3011518 - G 78 -2.1 -5.06414 | opp_overlap 3011536, overlap 3011487 3011486 3011519 GCGCCGCAACAAAAA CGCCAGC GTGCTGTTGTT GCTGGCA GCGCCCGCCCCGGTG TERM 2860 3011819 - 3011793 - G 83 -17.4 -2.63596 | GCTGACCCGATAGCA TTTCGGCCAGCA CCA TGCCGGCCGAAA AAATATCCATCAACG TERM 2861 3013056 - 3013090 + G 85 -16.5 -3.19192 | overlap 3013065 3013069 TGTGCAGGCTGCAGT GGACGCCG-CGCGTGCC GCG GGCGC-CGACGGCGTCC TTGGCTTCGGTGGCG TERM 2862 3013069 - 3013095 + G 76 -13.6 -3.05384 | overlap 3013056 3013065 GTGGACGCCGCGCGT GCCGCGGGCGCC GAC GGCGTCCTTGGC TTCGGTGGCGGCAGC Rfer_2729 3012814 - 3013968 + | iron-containing alcohol dehydrogenase Rfer_2730 3014749 - 3014012 - | hypothetical protein Rfer_2731 3015088 - 3014777 - | hypothetical protein ompR 3015256 - 3015987 + | osmolarity response regulator TERM 2863 3017127 - 3017093 - g 76 -9.1 -4.08692 | opp_overlap 3017116 CAATCTGCTGGAAAA CGCCGCCCGCTATGG CAAGT CCGTGGCGACCGGCG TGGCGGTGGTGGACA Rfer_2733 3015984 - 3017408 + | periplasmic sensor signal transduction histidine kinase TERM 2864 3017423 - 3017440 + T 72 -4.1 -4.731 | AGCACGGTCCTTCGG GCAAGAT CGCT ATCGTGC TTTTCTTGCTGCATT Rfer_2734 3019828 - 3017432 - | radical SAM family protein TERM 2865 3019747 - 3019733 - G 81 -8.6 -4.59773 | GCTCATCGGCAAAAA TTTGGC AAC GCCAAA GCGCGCCGCCCAGAA TERM 2866 3019957 - 3019933 - R 100 -9.9 -5.63374 | opp_overlap 3019933 3019948 CGAACACCAAAAAAA CGCCCCAAGTC CAT GACGCAGGGCG CTTTGAATGACCCTT Rfer_2735 3020720 - 3019992 - | response regulator receiver domain-containing protein TERM 2867 3021159 - 3021195 + r 100 -28.2 -3.05384 | TGGCTGATTTGAAGC GCGTCAGGCCGTAGGC ATGGC GCCTACGGCCTGACGC TTCGCTGGCCAACAA Rfer_2736 3021595 - 3021227 - | cytochrome c, class I TERM 2868 3021879 - 3021858 - H 70 -5.1 -4.42386 | gap 1 CCGGTAGCTACAAAA CCGAATTCGG CCC CCGA-TGCGG CCCTGACCACGGGCC Rfer_2737 3022184 - 3022603 + | response regulator receiver domain-containing protein Rfer_2738 3022683 - 3023267 + | response regulator receiver domain-containing protein TERM 2869 3023985 - 3024022 + G 76 -10 -3.74693 | overlap 3023988 AGCCCACAATGTCCA GGC-GGCGTCCTTGGGCA GCGG TGTC-AAGGACGCCTGTC TTTCCTGCCATGAAA TERM 2870 3023988 - 3024018 + G 76 -12.7 -3.29972 | gap 1, overlap 3023985 CCACAATGTCCAGGC GGCGTCCTTGGGCA GCGG TGTC-AAGGACGCC TGTCTTTCCTGCCAT Rfer_2739 3023344 - 3024759 + | hypothetical protein Rfer_2740 3024762 - 3025406 + | cytochrome B561 Rfer_2741 3026875 - 3025451 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2871 3025568 - 3025580 + g 77 -3.3 -4.95618 | TTCAGCACTGCGGGT CACGT TCG ACGCG TTTCTTTTTAGTGTT Rfer_2742 3028506 - 3026872 - | periplasmic sensor signal transduction histidine kinase TERM 2872 3027083 - 3027064 - G 80 -3.5 -5.08824 | TTTCGAGGTAAAAAA TGGATCG AAAATA CGCTCCA GGTTGGCTGGCGGAA Rfer_2743 3029792 - 3028668 - | oxidoreductase-like TERM 2873 3030391 - 3030380 - g 81 -4.4 -5.0133 | GAGTTCCTGAAAAAA CATC CCGA GATG CGTGGCAAAGACCAG Rfer_2744 3029927 - 3030844 + | phospholipid/glycerol acyltransferase Rfer_2745 3030851 - 3032107 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 2874 3032142 - 3032128 - T 75 -11.4 -3.35992 | ATTTACGGCAACGAA GTCGCG ACG CGCGAC GCCTTCCAGATCGAG Rfer_2746 3033056 - 3032205 - | binding-protein-dependent transport systems inner membrane component Rfer_2747 3033868 - 3033059 - | ABC transporter related Rfer_2748 3034887 - 3033865 - | extracellular solute-binding protein Rfer_2749 3036931 - 3035195 - | methyl-accepting chemotaxis sensory transducer TERM 2875 3037854 - 3037868 + G 78 -2.1 -5.03715 | overlap 3037866 3037867 CGATGGCACCGGTAC TTTCC CGGCC GGAGA TTTTTTCAAAATCGT Rfer_2751 3037537 - 3038280 + | hypothetical protein Rfer_2752 3039475 - 3038312 - | acyl-CoA dehydrogenase-like TERM 2876 3039336 - 3039324 - G 84 -3.3 -5.28176 | GTCATGCATAAAAAA CCGTT CTC ACCGG CCTTGCGCCAAACCG TERM 2877 3040145 - 3040127 - g 76 -7.3 -4.54821 | opp_overlap 3040144, overlap 3040128 ATTGGAATCACAAAA GCGCGCC ACCCA GGCGCGT GCCAGTGGCTACTTT Rfer_2753 3039603 - 3040808 + | acetyl-CoA acetyltransferase Rfer_2754 3040935 - 3043094 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding Rfer_2755 3043317 - 3044633 + | metal dependent phosphohydrolase Rfer_2756 3044637 - 3045236 + | chromate transporter Rfer_2757 3045233 - 3045841 + | chromate transporter TERM 2878 3046755 - 3046781 + G 70 -10.1 -3.53091 | gap 1 AAATTTTTGGAGTAT CTGG-CCAGCGC CCCA GCGCAGGACCAG TTTGCCAACGGCAAT TERM 2879 3046905 - 3046879 - g 80 -11.6 -3.76373 | overlap 3046880 GCTTCAAGAGCGAAA CCATCCCCATCA GTG TGGTGGGGATGA ACCAGGTCAAGGTTC TERM 2880 3046904 - 3046880 - g 70 -12.9 -2.85503 | overlap 3046879 CTTCAAGAGCGAAAC CATCCCCATCA GTG TGGTGGGGATG AACCAGGTCAAGGTT Rfer_2758 3045909 - 3046952 + | extracellular solute-binding protein Rfer_2759 3049290 - 3046963 - | ATPase AAA-2 TERM 2881 3049458 - 3049443 - R 70 -3.2 -4.81752 | overlap 3049444 AAAAACATCTAAAAA CCAACG GGCT CGCTGA TGCACTTTAACGGAT Rfer_2760 3049798 - 3049436 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2882 3049917 - 3049891 - R 100 -5.1 -6.4753 | gap 1 GGAAACAAAAAAAAA CCGCTCACAGCC GACA AGCCA-GAGCGG TTTGGATACCGGAGA Rfer_2761 3051219 - 3049966 - | isocitrate dehydrogenase TERM 2883 3051602 - 3051550 - g 100 -18.3 -3.53012 | CCTGCTGCCGCTAAA GCAGCAGCACCTGCTGCCGCTGCTG CTG CCGCACCCGCCGCAGCTGCCGCTGC AGCACCCGCTGCTGC Rfer_2762 3051439 - 3051840 + | protein tyrosine phosphatase, receptor type, F-like TERM 2884 3051830 - 3051820 - f 85 -2.4 -5.4593 | GCAAAAGAAGAAAAA GCTG CTG CTGC CAAGAAGTAATTCTT TERM 2885 3051881 - 3051864 - f 100 -12.7 -4.28432 | opp_overlap 3051864 3051876 AACTTGAACTGAAAA TGCCCGC TGAC GCGGGCA TTTTTCTGCCTGTCC TERM 2886 3051864 - 3051881 + F 100 -12.7 -4.89852 | opp_overlap 3051864, overlap 3051876 AACTTGAACTGAAAA TGCCCGC TGAC GCGGGCA TTTTTCTGCCTGTCC Rfer_2763 3051920 - 3052372 + | hypothetical protein TERM 2887 3052413 - 3052444 + T 77 -7.4 -4.25104 | gap 1, opp_overlap 3052412 3052413 3052424 CCCGTCGCATAAAAC GCCGT-CCGAAAG CCGCATT TTTTCGGCACGGC TTTTGATGCCACCCA Rfer_2764 3053504 - 3052392 - | PfkB Rfer_2765 3054182 - 3053535 - | pseudouridine synthase Rfer_2766 3056325 - 3054172 - | PAS/PAC sensor hybrid histidine kinase TERM 2888 3056138 - 3056113 - G 84 -10.5 -4.25615 | gap 1, opp_overlap 3056113 3056114, overlap 3056114 AAAAAGGGTAAGAAA CCGCT-CCGAAG CGC CTTCGGCAGCGA TTTGGCTATACCGCA Rfer_2767 3057047 - 3056682 - | hypothetical protein Rfer_2768 3057691 - 3057110 - | peptidase C56, PfpI TERM 2889 3057186 - 3057146 - G 86 -12.4 -3.97602 | CAACAGAGCCATAAA CTGCGACAACCAGGCGGG GTGTG CCGGCCAGGCCGGCGCAG TGACATATTGACCAT Rfer_2769 3057857 - 3058384 + | GCN5-related N-acetyltransferase Rfer_2770 3059515 - 3058397 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2890 3058652 - 3058638 - G 81 -7.8 -4.67353 | overlap 3058639 TGATGCAGCCAAAAA CGACGC ACC GCATCG GGCGCCAGGCCAAGT TERM 2891 3059000 - 3058984 - G 87 -10.1 -4.30576 | opp_overlap 3058984 3058989 GGTCCACCACCAAAA TGGCCCG GGC CGAGCCA GTTTTGACTGCGTTG Rfer_2771 3060247 - 3059669 - | phospholipid N-methyltransferase TERM 2892 3060557 - 3060544 - g 70 -3.8 -4.63218 | TGGCTGCCAAGAAAA CAGC CGGGGT GCTG GGAGATGATCTGGCC Rfer_2772 3060456 - 3061391 + | hypothetical protein TERM 2893 3061825 - 3061802 - g 91 -4.6 -5.48825 | gap 1, overlap 3061822 GATGATTTAAAAAAA CTGCTG-GTCA GCG TGACACACCAG GACGACTTCCCTGGC TERM 2894 3062191 - 3062171 - g 70 -3.1 -4.58283 | GAATGGCTTCAAAAA GCCGGGGTC ACA GATGCCGAC TGGCTGACTGCCATT Rfer_2773 3061472 - 3062701 + | hypothetical protein Rfer_2774 3063220 - 3062750 - | hypothetical protein TERM 2895 3062864 - 3062852 - G 73 -10.5 -3.63991 | CACCATTTTCAACAA GCCCG GCA CGGGC AGCGTGAGTTCGCCC Rfer_2775 3063688 - 3063281 - | hypothetical protein TERM 2896 3064239 - 3064251 + G 90 -4.8 -5.31275 | overlap 3064224 GACCGCCTTTGGTGG CACG GCGGG CGTG TTTTTTGTCATGGCC Rfer_2776 3063874 - 3064569 + | hypothetical protein TERM 2897 3064594 - 3064608 + F 100 -7.1 -5.5112 | opp_overlap 3064594, overlap 3064587 GCTTCCAGAAAAAAA GACCC TTTCC GGGTC TTTTTTCTTGATGGC TERM 2898 3064608 - 3064594 - f 100 -7.1 -5.60993 | opp_overlap 3064587 3064594 GCTTCCAGAAAAAAA GACCC TTTCC GGGTC TTTTTTCTTGATGGC Rfer_2777 3064690 - 3065085 + | hypothetical protein rumA 3066542 - 3065109 - | 23S rRNA 5-methyluridine methyltransferase TERM 2899 3065313 - 3065325 + g 70 -3.3 -4.71828 | GATGGGTGGATGACC GATGG GGT CCAGC TTTTGTTGATGCAGT Rfer_2779 3067662 - 3066610 - | sigma-70 region 2 TERM 2900 3066722 - 3066671 - G 90 -14.5 -3.53811 | opp_overlap 3066720 TTGAGCTTGGCCAAA GC-CTCGTTCTGGACCTGTCGCACG CGCT CACGCGTCAGGTCCAGA-CGCGCGC TGAGCACATCCAGCG TERM 2901 3067618 - 3067598 - G 93 -11.1 -4.37886 | opp_overlap 3067589, overlap 3067599 CTATTTGTCACAAAA TCCGACACG CCG CGTGTCGGC AGTCTGGGAGCGTTG TERM 2902 3067617 - 3067599 - G 82 -14.6 -3.2241 | opp_overlap 3067589, overlap 3067598 TATTTGTCACAAAAT CCGACACG CCG CGTGTCGG CAGTCTGGGAGCGTT Rfer_2780 3068559 - 3067681 - | peptidase M23B TERM 2903 3067954 - 3067920 - G 100 -17.8 -4.19624 | opp_overlap 3067926, overlap 3067923 CAGCCCCAACATAAA CCACCCGGCCGTCGGC GGC GGCGACGACCGGGTCG CCCGCGACGCCGCCA TERM 2904 3067951 - 3067923 - G 89 -18.1 -3.11182 | opp_overlap 3067926, overlap 3067920 CCCCAACATAAACCA CCCGGCCGTCGGC GGC GGCGACGACCGGG TCGCCCGCGACGCCG TERM 2905 3067926 - 3067980 + g 100 -12.7 -4.45738 | opp_overlap 3067923 3067920 CAACATAAACCACCC GGCCGTCGGCGGCGGCGACGAC-CGGG TCG CCCGCGACGCCGCCAATGTCGA-GGCC TTTGTTCTTGACCTC Rfer_2781 3069350 - 3068556 - | protein-L-isoaspartate O-methyltransferase Rfer_2782 3070108 - 3069347 - | stationary-phase survival protein SurE TERM 2906 3071140 - 3071109 - g 95 -13 -4.20806 | opp_overlap 3071135, overlap 3071110 CAGGGCAAAATCAAA CCCGTCATCGACAG CACC CTGCCGATGGCGGA GCTCAAGGCCGCCTT TERM 2907 3071139 - 3071110 - g 80 -14.3 -3.11761 | opp_overlap 3071135, overlap 3071109 AGGGCAAAATCAAAC CCGTCATCGACAG CACC CTGCCGATGGCGG AGCTCAAGGCCGCCT Rfer_2783 3070233 - 3071207 + | zinc-binding alcohol dehydrogenase TERM 2908 3071405 - 3071383 - T 71 -6.3 -4.30014 | opp_overlap 3071388, overlap 3071368 GCTATTAATTTAAAA GCAAAGAGT TCCAG ACTCTTGGC TACCGAAAGGCTCAG Rfer_2784 3073399 - 3071417 - | glucosyltransferase MdoH TERM 2909 3073309 - 3073293 - G 73 -9.3 -3.85817 | opp_overlap 3073304, overlap 3073266 AGGCTGTTCCAGAAA CCTCGCC ACT GGCGCGG CACCATGGAGCCGCG mdoG 3074964 - 3073396 - | glucan biosynthesis protein G TERM 2910 3073519 - 3073531 + g 78 -4.7 -4.82901 | overlap 3073518 3073520 3073526 TGTCATGCGCCAGGC GCCGG TGG CCGGG TTTTTGTAGGCCAGG TERM 2911 3073717 - 3073741 + g 78 -6.4 -4.62069 | overlap 3073704 GCGCGATTGCGTGAC CCAGCCGTTG GGCGG CAATTGCTGG TTTTTGCCCTGCCAG TERM 2912 3075063 - 3075080 + r 70 -3.3 -4.82901 | opp_overlap 3075064 3075065, overlap 3075065 3075076 GGAAAGTGACAGGAA AGCCGGT GCCA ACCGGTG TTTTTGTCGCCGAAG TERM 2913 3075065 - 3075078 + r 74 -8.1 -4.03995 | opp_overlap 3075065 3075064, overlap 3075063 3075076 AAAGTGACAGGAAAG CCGGT GCCA ACCGG TGTTTTTGTCGCCGA Rfer_2786 3076602 - 3075169 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2914 3075520 - 3075546 + g 95 -2.2 -5.59879 | gap 1, opp_overlap 3075519, overlap 3075521 GGTCAAGGCAATCAG GGCCTCGGGCG CAAATC CGCTC-AGGCG TTTTTTGTATTTGTC TERM 2915 3075624 - 3075581 - G 84 -3.7 -5.16237 | gap 1, overlap 3075583 AATTTGACCAAAAAA TAGTTGGCC-AGCAGCGCGA TGTCC TCGCGCCGCTCGGACAGCGG CGGCAAGCTCAAGGT TERM 2916 3075622 - 3075583 - G 84 -10.7 -4.20707 | gap 1, overlap 3075581 TTTGACCAAAAAATA GTTGGCC-AGCAGCGCGA TGTCC TCGCGCCGCTCGGACAGC GGCGGCAAGCTCAAG TERM 2917 3076386 - 3076357 - G 70 -9.9 -3.55622 | gap 1, overlap 3076359 3076360 GCGAATGTCGTCAAA CAGC-GCCAGGCCG TCG CGGCCCGGCAGGCG CACGTCACTGAGCAC TERM 2918 3076383 - 3076359 - G 72 -11.3 -3.35522 | overlap 3076357 3076360 GAATGTCGTCAAACA GCGCCAGGCCG TCG CGGCCCGGCAG GCGCACGTCACTGAG TERM 2919 3076382 - 3076360 - G 76 -14.8 -2.60992 | overlap 3076359 3076357 AATGTCGTCAAACAG CGCCAGGCCG TCG CGGCCCGGCA GGCGCACGTCACTGA Rfer_2787 3077261 - 3076599 - | hypothetical protein TERM 2920 3077173 - 3077155 - G 86 -13.8 -3.55444 | CCGCGAGGGCCGAAA CGGCCAGC GCA GCCGGCCG CCAGCATCGCGATGG Rfer_2788 3078666 - 3077245 - | periplasmic sensor signal transduction histidine kinase TERM 2921 3078484 - 3078515 + g 76 -15.2 -2.52795 | gap 1, opp_overlap 3078484 3078483 GCGCTCCATGGAAAC GCTGAGCTCGCTCAG TGA CTGGGCGAGC-CGGC TGAGTTCAAGCGATT TERM 2922 3078832 - 3078850 + r 83 -10.3 -4.0616 | opp_overlap 3078830 3078828 3078832 CGGAAGACGAATATA GGCCATC GCCAG GATGGCC TTTGTGCTTCAACTG TERM 2923 3078850 - 3078832 - R 71 -10.3 -3.18768 | opp_overlap 3078832, overlap 3078830 3078828 CGGAAGACGAATATA GGCCATC GCCAG GATGGCC TTTGTGCTTCAACTG Rfer_2789 3080448 - 3078859 - | methyl-accepting chemotaxis sensory transducer TERM 2924 3081695 - 3081713 + G 80 -10.2 -4.07568 | overlap 3081689 CCACTTTGATGTTCA CCCTGGGC ATT GCCTGGGG TTTTGGCAAGGCCAG Rfer_2790 3080731 - 3081987 + | major facilitator transporter TERM 2925 3083045 - 3083083 + G 78 -7.5 -4.62069 | gap 1, overlap 3083049 CCTTCGGCTCGTTCA TCGGCTTC-TCGATGGCG CTGC CGCTGTCGATGAAGGTGA TTTTTGGCGTCAGCC Rfer_2791 3082012 - 3083640 + | nitrate/nitrite antiporter TERM 2926 3085236 - 3085210 - g 95 -12.2 -4.17048 | opp_overlap 3085206, overlap 3085211 TCGCTCGGAAAAGAA GGCGACCAGCGC GAC GCCCTGGTCGCT ACCGTGTTCGACCTG TERM 2927 3085235 - 3085211 - g 83 -15.7 -3.09908 | opp_overlap 3085206, overlap 3085210 CGCTCGGAAAAGAAG GCGACCAGCGC GAC GCCCTGGTCGC TACCGTGTTCGACCT Rfer_2792 3083752 - 3087570 + | nitrate reductase, alpha subunit TERM 2928 3087679 - 3087665 - g 76 -5.6 -4.59773 | CGTCACCTGCAAAAA CGTCTG GAC CAGCCG CCCTGGCATGGAATA Rfer_2793 3087582 - 3089105 + | nitrate reductase, beta subunit Rfer_2794 3089108 - 3089815 + | nitrate reductase molybdenum cofactor assembly chaperone Rfer_2795 3089812 - 3090546 + | respiratory nitrate reductase, gamma subunit Rfer_2796 3090557 - 3091348 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2929 3091367 - 3091389 + T 74 -11.3 -3.22409 | opp_overlap 3091366, overlap 3091362 CGCCATCAATGGAAG CGACGCTCT AACCG AGGGCGTCG TTCACTTGGTCGTTG Rfer_2797 3091814 - 3091374 - | signal-transduction protein TERM 2930 3091893 - 3091848 - R 100 -8.9 -4.97312 | opp_overlap 3091859 3091865, overlap 3091850 AAAATGAATGAAAAA GTGCAGGCCAAGATCAGCGCA GGGC TGCGTTGATCTTGTCGAGCGC CTGAGACCCTGGGCA TERM 2931 3091859 - 3091882 + r 78 -11.8 -3.29144 | opp_overlap 3091850 3091848, overlap 3091865 AAAAGTGCAGGCCAA GATCAGCGCA GGGC TGCGTTGATC TTGTCGAGCGCCTGA Rfer_2798 3092916 - 3091861 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta Rfer_2799 3094757 - 3092913 - | pyruvate flavodoxin/ferredoxin oxidoreductase-like Rfer_2800 3096580 - 3094754 - | 4Fe-4S ferredoxin, iron-sulfur binding Rfer_2801 3097252 - 3096743 - | lactoylglutathione lyase TERM 2932 3096959 - 3096915 - G 95 -14.4 -4.08216 | gap 1, opp_overlap 3096958, overlap 3096919 CCACCCGGCGCAAAA CG-CACGCCATTGGCCGTG AGCCATTG CACGGCCAATGGCAGGTCG TCGATCCAGAGCCCG TERM 2933 3096954 - 3096919 - G 84 -17 -2.74605 | overlap 3096915 CCGGCGCAAAACGCA CGCCATTGGCCGTG AGCCATTG CACGGCCAATGGCA GGTCGTCGATCCAGA Rfer_2802 3099303 - 3097249 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 2934 3098924 - 3098940 + g 84 -3.5 -5.16572 | opp_overlap 3098922 3098918, overlap 3098926 GGAATGCAATTGACG CCCGCGG CGC CAGCGAG TTTTTTCGATTCAAT Rfer_2803 3101195 - 3099663 - | propionyl-CoA carboxylase TERM 2935 3100172 - 3100158 - G 79 -9.2 -4.15453 | opp_overlap 3100158, overlap 3100159 GAAGGCATCGCAAAA GCGCAC AAA GCGCGC CGCTTTGATCGAGCT Rfer_2804 3102316 - 3101258 - | arginine/ornithine transport system ATPase Rfer_2805 3104500 - 3102341 - | methylmalonyl-CoA mutase TERM 2936 3102839 - 3102864 + g 80 -3.9 -5.09225 | opp_overlap 3102823, overlap 3102843 GCCGGTCACCTTTTG TGTGTCGGCGC GGTG GCGCCCATAAA TTTTTTCCATGGCAT TERM 2937 3102991 - 3103006 + g 77 -3.2 -4.90869 | gap 1, overlap 3102994 TCAACGCAGCATTCA CGAGGGC TGG GTCC-CG TTTTTGCTTGATACT TERM 2938 3104553 - 3104573 + H 76 -12.5 -2.7094 | opp_overlap 3104537, overlap 3104552 3104555 CGGGTACCGGATGAT CACGGACCG CTT CGGCCCGTG CTTGTCTCGATACGG Rfer_2806 3104655 - 3105302 + | GntR family transcriptional regulator Rfer_2807 3106609 - 3105311 - | hypothetical protein TERM 2939 3105603 - 3105591 - G 83 -4.7 -5.06414 | overlap 3105593 GTTGGGCAATAAAAA CCGGC GCC GCTGG GCCCACATTTTGTGA Rfer_2808 3107087 - 3106596 - | hypothetical protein TERM 2940 3106801 - 3106780 - G 74 -10.9 -3.55622 | overlap 3106783 TTGAAGGTCTTGAAA TAAGTGCCC AGCA GGGCACTCA AGTCCGGCAACACCG TERM 2941 3106798 - 3106783 - G 78 -10.4 -3.91488 | overlap 3106780 AAGGTCTTGAAATAA GTGCCC AGCA GGGCAC TCAAGTCCGGCAACA TERM 2942 3106932 - 3106945 + g 70 -3.1 -4.59773 | GCTTGGGGCCACGGG TGTAG TAGC CTGCA TTTTTGCGGCTGGCA Rfer_2809 3107320 - 3107093 - | hypothetical protein Rfer_2810 3108769 - 3107636 - | extracellular ligand-binding receptor putA 3113017 - 3108932 - | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 2943 3109621 - 3109588 - G 76 -12.5 -3.35798 | gap 2, opp_overlap 3109598 3109599, overlap 3109575 3109591 AGCTGCCAGGCACAA GCACGCGACTGGCGG GCGAGG CCGCCAG-CGCG-GC CAACCCCGGGTTGCT TERM 2944 3109619 - 3109591 - G 75 -13.9 -2.8474 | gap 1, opp_overlap 3109598 3109599, overlap 3109575 3109588 TGCCAGGCACAAGCA CGCGACTGGCGG GCGAGG CCGCCAG-CGCG GCCAACCCCGGGTTG TERM 2945 3113071 - 3113038 - R 74 -9.7 -3.66288 | opp_overlap 3113037 3113035 CACCTTTTAATAGAA TTGGTTGCACCTA TCTTAATT TAGGTGCAACCCA CTATTAATAAGTGTT Rfer_2812 3113862 - 3113149 - | hypothetical protein TERM 2946 3113561 - 3113527 - GR 73 -9.3 -3.85817 | gap 2 AGCGTCTTTGAGAAA CCTCCAGCGCCAGTAGC CCA GCT-CCG-CGCTGGCGG TACGCACCGACTCTG Rfer_2813 3114202 - 3113822 - | XRE family transcriptional regulator TERM 2947 3114026 - 3113998 - GR 74 -3.1 -4.84761 | overlap 3113999 3114001 ACACGCGCACAAAAA GCAGCGCAAAG TCCCACT CTTTGCGCTTG GGGTCAAGCAGGTAG TERM 2948 3114200 - 3114216 + gr 85 -2.2 -5.42514 | TTGATCGAGGGCAGG CATGAG GGTCG CTCCTG TTTTTTACTTTCTGC TERM 2949 3114412 - 3114429 + r 81 -2.6 -5.32882 | opp_overlap 3114412 GTGCTGAGTGACGAA GTCCGG GGACTG CCGCAC TTTTTTATGATGGTC Rfer_2814 3115573 - 3114701 - | hypothetical protein TERM 2950 3114759 - 3114784 + g 73 -13.3 -2.79796 | opp_overlap 3114782, overlap 3114739 GCCACGGATCGGCCG GCCTTGCCTGC GCAT GCAGCCAAGGC TGTGATCAGCTCACC TERM 2951 3114864 - 3114879 + g 76 -7.5 -4.46212 | overlap 3114863 3114862 CCGGTGCGCAGCATG CCGCC CAAGTC GGCGG TTTTCTGATGCACCG Rfer_2815 3117537 - 3115573 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 2952 3116109 - 3116077 - G 73 -9.2 -3.87354 | gap 2, opp_overlap 3116077 3116078, overlap 3116078 CAAAGGCATATCAAA GGCCGCCACACTGTCG GCA CGCCAGT-TGGCG-CC GTTTTGCATGGCCAA Rfer_2816 3118370 - 3117534 - | enoyl-CoA hydratase/isomerase TERM 2953 3117636 - 3117623 - G 75 -2.3 -5.00616 | overlap 3117624 3117626 3117627 CGGCGCGGGAAAAAA TGAGG GCCG CCTCC TGCACCAGGCTGGCA TERM 2954 3118017 - 3118027 + g 71 -8.2 -4.13767 | CAGCACCACCACCAG CGCC AGC GGCG TTTTGGCGTAGGCAA Rfer_2817 3119521 - 3118370 - | acyl-CoA dehydrogenase-like TERM 2955 3119226 - 3119195 - G 70 -4.5 -4.56597 | gap 2, overlap 3119196 3119197 3119222 GCTGGGGGCCAAAAA CTCGCGTTTGAGCTC ATCG GAGC-CAAA-GCGCG CCAAGGCCGGCGTAC Rfer_2818 3121179 - 3119569 - | propionyl-CoA carboxylase Rfer_2819 3121346 - 3121642 + | sterol-binding Rfer_2820 3121666 - 3122196 + | MerR family transcriptional regulator TERM 2956 3122461 - 3122437 - T 74 -7.2 -4.18494 | opp_overlap 3122437 CATGGGCATTGAAAA GCCTGCTA CTTAATTGT TAGCAGGC TTTTTTGTTTCTGGT TERM 2957 3122437 - 3122461 + T 100 -7.2 -5.73978 | opp_overlap 3122437 CATGGGCATTGAAAA GCCTGCTA CTTAATTGT TAGCAGGC TTTTTTGTTTCTGGT TERM 2958 3122500 - 3122527 + T 83 -7.2 -4.64766 | gap 1 CAGTTTGAGGGTCGA TGCTTTGTTATTC GAT GAATAAC-AGGCA TTTTTCCAGTATCCC Rfer_2821 3123178 - 3122669 - | hypothetical protein Rfer_2822 3123676 - 3123873 + | hypothetical protein TERM 2959 3124634 - 3124623 - g 83 -2.2 -5.28176 | GTGACTCAGAAAAAA CAGT ACGA ACCG TCATGGGAAAGCCAA Rfer_2823 3124280 - 3124771 + | hypothetical protein TERM 2960 3124915 - 3124905 - f 70 -6.8 -4.09117 | opp_overlap 3124904 3124905 3124905 GTCATTGATAAATAA GGGT GTT ACCC CCTTTTAATTCGTTT TERM 2961 3124905 - 3124917 + F 71 -4.7 -4.53774 | opp_overlap 3124905, overlap 3124905 3124904 GTCATTGATAAATAA GGGTG TTA CCCCC TTTTAATTCGTTTGT TERM 2962 3124986 - 3125010 + F 100 -7.2 -5.73978 | opp_overlap 3124986 CATGGGCATTGAAAA GCCTGCTA CTTAATTGT TAGCAGGC TTTTTTGTTTGTGCT TERM 2963 3125010 - 3124986 - f 74 -7.2 -4.18494 | opp_overlap 3124986 CATGGGCATTGAAAA GCCTGCTA CTTAATTGT TAGCAGGC TTTTTTGTTTGTGCT Rfer_2824 3125129 - 3126382 + | chromate transporter Rfer_2825 3126528 - 3126734 + | hypothetical protein Rfer_2826 3126764 - 3127201 + | hypothetical protein Rfer_2827 3127859 - 3127263 - | 3'-5' exonuclease TERM 2964 3127594 - 3127542 - G 77 -11.2 -3.59979 | gap 2, opp_overlap 3127535, overlap 3127558 GTCGCCCAGGCCAAA GCCG-GCCTTGGTGAAAC-CCGGCAG GGC CAGCAGGTGTGCCACCACGGCGCGGC ACGCCGGGTCGTGCA TERM 2965 3128551 - 3128607 + G 95 -6.4 -5.41143 | gap 2, overlap 3128549 3128593 CTGGAACATGTGCCC GATCCGGCCTCGGTGGTTCGGGCCTGCG CCA CGCTGG-TCAAGCC-CGGTGGCTGGGTC TTTTTTTCCACGCTG TERM 2966 3128593 - 3128605 + G 74 -6.9 -4.34482 | overlap 3128551 GCCACGCTGGTCAAG CCCGG TGG CTGGG TCTTTTTTTCCACGC Rfer_2828 3128122 - 3128880 + | 3-demethylubiquinone-9 3-methyltransferase Rfer_2829 3128895 - 3129560 + | phosphoglycolate phosphatase TERM 2967 3129976 - 3130001 + F 100 -10.5 -5.32944 | opp_overlap 3129975 TATCCCCTGACGAAG GCCGCTAAC GACATACA GTTAGCGGC TTTTTTCATTGTGAA TERM 2968 3130482 - 3130465 - g 71 -9.1 -3.76413 | gap 1 GTTGAAAAGCTGAAA GCCGCGCG ACC CG-GCGGC GACACATTCAAAGCC Rfer_2830 3130189 - 3131427 + | phage integrase Rfer_2831 3131497 - 3131994 + | hypothetical protein TERM 2969 3131994 - 3131971 - f 95 -8.2 -5.05782 | ACTGAGTGGAAAAAA TTACGGTCTG CCAG CACACCGTAA CCCCTGCCAGTACAC Rfer_2832 3132107 - 3132472 + | phage transcriptional regulator, AlpA Rfer_2833 3132465 - 3132929 + | hypothetical protein Rfer_2834 3132926 - 3134488 + | hypothetical protein Rfer_2835 3134485 - 3134844 + | hypothetical protein Rfer_2836 3134856 - 3135098 + | hypothetical protein TERM 2970 3135917 - 3135937 + G 77 -11.1 -3.68619 | overlap 3135899 GCATTGGTGAACGGG GCCACTGGT TTT GCCGGTGGC TTTGAATCGCTTGCA TERM 2971 3136059 - 3136076 + G 73 -9.1 -3.9461 | overlap 3136053 TGGTGGCAGTGGCCC CCGCCGA TTGG TTGGCGG TTGTTGTTGCAAAAG Rfer_2837 3135314 - 3136372 + | hypothetical protein Rfer_2838 3136513 - 3136794 + | hypothetical protein Rfer_2839 3137926 - 3137111 - | hypothetical protein TERM 2972 3138274 - 3138290 + r 100 -3.6 -5.87996 | opp_overlap 3138276, overlap 3138276 GCCCCATCACCATGA CACAGC GATGG GCTGGG TTTTTTTGTTGATTG TERM 2973 3138529 - 3138553 + r 100 -10.7 -4.81551 | opp_overlap 3138528 3138522 3138529 GCACCAAATGCAAAG GCCCCTAGCTG TCA TGGTTAGGGGC TTTTTCATATAACTA Rfer_2840 3139212 - 3138616 - | hypothetical protein TERM 2974 3139809 - 3139834 + r 100 -10.5 -5.68438 | opp_overlap 3139808 TATCCCCTGACGAAG GCCGCTAAC GACATACA GTTAGCGGC TTTTTTCTTTGGTAA Rfer_2842 3140443 - 3139901 - | 2',5' RNA ligase Rfer_2843 3141130 - 3140483 - | bifunctional deaminase-reductase-like Rfer_2844 3142302 - 3141193 - | selenophosphate synthetase Rfer_2845 3144238 - 3142616 - | AMP-dependent synthetase and ligase TERM 2975 3143610 - 3143590 - G 70 -10.4 -3.53722 | GCGAGAGCGACAGAA TGCCGGGC AGGCA GCCCGACA TGGCGTTGAGCACAA Rfer_2846 3145046 - 3144255 - | alpha/beta hydrolase Rfer_2847 3145487 - 3145188 - | hypothetical protein TERM 2976 3145571 - 3145546 - R 91 -7.6 -4.96848 | gap 1, overlap 3145547 3145549 TTTTCTATATAAAAA TC-AGCCACCG GCAAT CGGTGGCCAGA TGGCCAGCACATCGC TERM 2977 3145567 - 3145549 - R 80 -11.7 -3.35962 | overlap 3145547 3145546 TCTATATAAAAATCA GCCACCG GCAAT CGGTGGC CAGATGGCCAGCACA Rfer_2848 3145800 - 3145546 - | thiamineS Rfer_2849 3147111 - 3145819 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2978 3147148 - 3147131 - R 100 -11.3 -5.60993 | opp_overlap 3147128 3147131 TTCTCCAGAAAAAAA CGGCTCT TTGC AGAGCCG TCATGTTAGGTGGCA Rfer_2850 3149027 - 3147174 - | aldehyde ferredoxin oxidoreductase TERM 2979 3148505 - 3148524 + g 74 -7.1 -4.386 | gap 1 GCAAGTCGTTGACCA CGGCG-GC AAACA GCACGCCG TTTTCTCCGGCCTTG Rfer_2851 3149603 - 3149040 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 2980 3149758 - 3149720 - R 100 -18.2 -5.0925 | opp_overlap 3149724, overlap 3149724 TTTGAAAATTAAAAA GAAACGCCACCGCAAGGA GGA CCCCCGCGGTGGCGTTTG AGTTACGTGAAAAGA TERM 2981 3149754 - 3149724 - R 100 -19 -5.02421 | opp_overlap 3149724, overlap 3149720 AAAATTAAAAAGAAA CGCCACCGCAAGGA GGA CCCCCGCGGTGGCG TTTGAGTTACGTGAA TERM 2982 3149724 - 3149754 + r 93 -13.9 -3.76952 | opp_overlap 3149724 3149720 AAAATTAAAAAGAAA CGCCACCGCAAGG AGGAC CCCCGCGGTGGCG TTTGAGTTACGTGAA Rfer_2852 3151089 - 3149776 - | putative di-heme cytochrome c TERM 2983 3151124 - 3151173 + r 75 -7.1 -4.48176 | opp_overlap 3151129, overlap 3151129 TCTCTAAATCATCAA AAAAATACAGAGCAAACCTGCGG CAGA CCACGGGGTTGCTCTGTATTGAC TTTCTTCCTTTTGTG TERM 2984 3151168 - 3151129 - R 100 -15.8 -5.5943 | opp_overlap 3151124 3151129 AAATCATCAAAAAAA TACAGAGCAAACCTGCGG CAGA CCACGGGGTTGCTCTGTA TTGACTTTCTTCCTT TERM 2985 3151129 - 3151168 + r 100 -15.8 -3.39434 | opp_overlap 3151129, overlap 3151124 AAATCATCAAAAAAA TACAGAGCAAACCTGCGG CAGA CCACGGGGTTGCTCTGTA TTGACTTTCTTCCTT Rfer_2853 3151770 - 3151270 - | hypothetical protein TERM 2986 3151743 - 3151754 + g 73 -4.4 -4.71426 | GCATGACGCCCGCCA GCAA GAGT TTGC TTTTCTTCGTCGACA Rfer_2854 3153370 - 3151997 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2987 3152702 - 3152719 + g 70 -4 -4.72272 | overlap 3152703 GGGATTGGCCTGGGC CGCGCC GGTAAA GGCGCC TTTTTCATAGCCAAA TERM 2988 3153119 - 3153087 - G 70 -4.8 -4.46514 | gap 2, overlap 3153089 AGGTAGTCAAACAAA CCTTCGCGCACGGCGG CCA CCG-CGT-CGCGCACG TCAGCATGGCCCGTG Rfer_2855 3155159 - 3153360 - | periplasmic sensor signal transduction histidine kinase TERM 2989 3155778 - 3155792 + G 74 -5.6 -4.56597 | CCTCGGTCTACAGTT GTGCCG GTG CGCCAC TTTTTGGACCGGACG TERM 2990 3156000 - 3155964 - g 72 -12.4 -3.01791 | opp_overlap 3155977 ACTGGCCGGGCAACA TCCTGGGCAC-GGATGCC GAT GGCATCCTGTGC-CTGGA CGCAGACGGCTGGGT Rfer_2856 3155249 - 3156391 + | putative GAF sensor protein Rfer_2857 3157180 - 3156413 - | ModE family transcriptional regulator TERM 2991 3157751 - 3157734 - g 84 -10.5 -4.19506 | ACGCCAACCCCAAAA CCGCGCC CTAT GGCGCAG CGGCGGTGCAGGTCA TERM 2992 3157990 - 3157964 - g 82 -14.4 -3.18383 | AGTCCGATCCAGCAA GATGCCGTGCTG CTG CAGCACGGCGCC AACAACCCGGCGGCG Rfer_2858 3157322 - 3158077 + | molybdenum ABC transporter, periplasmic molybdate-binding protein TERM 2993 3158713 - 3158723 + G 77 -3.2 -4.91285 | overlap 3158691 TTGGCTGCCGTCATG CTGG GCT TCAG TTTTGTTGTGTTGCT Rfer_2859 3158074 - 3158787 + | molybdate ABC transporter permease Rfer_2860 3158784 - 3159893 + | molybdate ABC transporter ATP-binding protein Rfer_2861 3160727 - 3160047 - | isoprenoid biosynthesis protein Rfer_2862 3160824 - 3161570 + | AzlC-like TERM 2994 3161683 - 3161695 + G 73 -4.7 -4.59773 | overlap 3161684 CCACCCACTGGTGCA ACGCC TGG GGCGC TTTTTGCCGCTGGCC Rfer_2863 3161567 - 3161899 + | branched-chain amino acid transport Rfer_2864 3163988 - 3162033 - | sigma-54 dependent trancsriptional regulator TERM 2995 3162174 - 3162205 + g 73 -10.1 -3.60627 | gap 1, opp_overlap 3162195, overlap 3162173 3162203 CAGGTTCTGCGAGGG CTC-GGCCGCCGTG GACAA CATGGCGGCCCGCG TTTGAGGTGCAGTCG TERM 2996 3163246 - 3163213 - G 80 -3.7 -5.03314 | GCGAGTTTCAAAAAA GCCAGTCCATTGCGG TTGG CCCCAACGATCCAGC CGTCGTCCGACAGCG TERM 2997 3164318 - 3164295 - H 80 -4.6 -5.08824 | gap 1, overlap 3164296 CGGCGACGCAAAAAA CCAAAGT-CGC AAG GCGGACTTCGA CAACCACCAAAACCA Rfer_2865 3164352 - 3165560 + | iron-containing alcohol dehydrogenase TERM 2998 3165768 - 3165754 - f 74 -2.9 -4.84761 | ACAGGCGTAGAAAAA GATTT GTTTG AAATC AACGGTTGGCATGCC Rfer_2866 3165870 - 3167390 + | aldehyde dehydrogenase TERM 2999 3167440 - 3167423 - T 100 -14.1 -3.81027 | opp_overlap 3167423 GTGAATCAATCCAAA GGGGCGG GCAA CCGCCCC TTTTTCAATTTCGAG TERM 3000 3167423 - 3167440 + T 100 -14.1 -4.81249 | opp_overlap 3167423 GTGAATCAATCCAAA GGGGCGG GCAA CCGCCCC TTTTTCAATTTCGAG TERM 3001 3167496 - 3167477 - T 90 -5.6 -5.24531 | opp_overlap 3167477 3167480 AGGGTTGACAAAAAA GCTGGGCG GAGT CACGCAGC TCTGATTTTTAAAGT Rfer_2867 3168359 - 3167511 - | hypothetical protein TERM 3002 3167880 - 3167866 - G 73 -9.2 -3.86897 | opp_overlap 3167878 GCCATCTTCCAGAAA CGCAGC TCA GCCGCG TGGGTGCCGCTCTTG TERM 3003 3168135 - 3168171 + g 73 -5.1 -4.62069 | gap 1, overlap 3168117 3168137 GATGGCCTGGCCAGT GCCCAGTGCCA-CGAC TTTCAC GTCGATGCCGCTGGCC TTTTTGAACTCGGGC Rfer_2868 3169105 - 3168356 - | ABC transporter related TERM 3004 3168902 - 3168883 - G 73 -10.7 -3.58726 | CCGGGTCAGACACAA GCTGCCC CGATGT GGGCAGC GCCAAGCCATGCAAC Rfer_2869 3169884 - 3169102 - | binding-protein-dependent transport systems inner membrane component TERM 3005 3169271 - 3169257 - G 75 -7.8 -4.2679 | overlap 3169246 3169260 CAACGCTGAGCAAAA TCAGCC CCA GGCCGA GCGCCAGCGGCAAAT TERM 3006 3170488 - 3170476 - g 91 -5.5 -5.42862 | ACACTGGCAAAAAAA CACTC ACT GAGCG CACCTACAAACCCTT Rfer_2870 3169935 - 3171053 + | molybdate metabolism transcriptional regulator TERM 3007 3171418 - 3171437 + G 79 -12.2 -3.5393 | GCTGCTCAACGGTGA GCACGTCA AGAT TGACGTGC TTTACGGCCACTGGT Rfer_2871 3171197 - 3171805 + | tripartite ATP-independent periplasmic transporter DctQ TERM 3008 3171801 - 3171782 - f 74 -2.1 -5.06414 | overlap 3171796 CTGGCCGAAGAAAAA GCAGC CAAAGCCAAC GCTGC CTGAATCAGGAAACA TERM 3009 3172823 - 3172844 + G 80 -10.9 -3.78953 | gap 1, opp_overlap 3172819 CACCAACCGAAGGTG GCGC-CATGG GCG CCATGGGCGC TTTGATCATGGCCAT Rfer_2872 3171820 - 3173607 + | TRAP dicarboxylate transporter- DctM subunit TERM 3010 3173682 - 3173652 - T 100 -16.3 -3.13343 | opp_overlap 3173652 ATGGCAAGCATCCAA TGCCGCTGCAAAC GTCTG ATTTGCAGCGGCA TTTTCTTGACCGCTG TERM 3011 3173652 - 3173682 + T 100 -15.6 -4.63932 | opp_overlap 3173652 ATGGCAAGCATCCAA TGCCGCTGCAAA CGTCTGA TTTGCAGCGGCA TTTTCTTGACCGCTG TERM 3012 3173767 - 3173746 - T 100 -12.9 -5.75945 | ACGGGCGAAAAAAAA CCCGCCGGG CGAA CCTGGCGGG CCGAACCGATTGACA Rfer_2873 3174885 - 3173806 - | twin-arginine translocation pathway signal TERM 3013 3174841 - 3174861 + g 73 -8.9 -3.90112 | opp_overlap 3174845, overlap 3174843 CACACCGGCGGCCAG TACACCGGC AAT GCCGGCGTG TTTAATTAAAGAACG TERM 3014 3175502 - 3175468 - R 100 -13 -5.46706 | ACCTGAAAACAAAAA TGTCCGATGAAATGTA TTG CACACCTCACCGGACA AAAAAAGAACTACCC TERM 3015 3175527 - 3175512 - R 72 -2.4 -4.89054 | overlap 3175520 CGGACAAAAAAAGAA CTACCC AAGC GGGCCG CGACGTGCGCGACCC TERM 3016 3175545 - 3175520 - R 71 -10.4 -3.18094 | gap 1, overlap 3175512 AAAAGAACTACCCAA GC-GGGCCGCG ACGTG CGCGACCCTGC CATCCGGATTTACAG Rfer_2874 3176640 - 3175555 - | twin-arginine translocation pathway signal TERM 3017 3176595 - 3176617 + g 86 -14.8 -3.33696 | opp_overlap 3176589 3176590 CAGCACCAACGGCCA GCACGCCGGC AAT GCCTGCGTGC TTGATTACGGAACGA Rfer_2875 3178723 - 3176825 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3018 3178674 - 3178620 - G 80 -10 -4.00042 | gap 3, overlap 3178621 CTGTGGAGCAAATAA GCCCGCAACTCGTCGGCCAGCGCGCCC AACT GCGCGCGC-GGC--ACGAGCCGCAGGT CAGCGGGATCATTGA TERM 3019 3178673 - 3178621 - G 76 -13.5 -2.99704 | gap 3, overlap 3178620 TGTGGAGCAAATAAG CCCGCAACTCGTCGGCCAGCGCGCCC AACT GCGCGCGC-GGC--ACGAGCCGCAGG TCAGCGGGATCATTG Rfer_2876 3179740 - 3178796 - | polyprenyl synthetase Rfer_2877 3180024 - 3179737 - | exonuclease VII, small subunit TERM 3020 3179869 - 3179859 - G 71 -6.8 -4.19817 | GGTACTGACTCAAAA GCTG GTC CAGC GGCAAATCGCCCGAC TERM 3021 3180137 - 3180150 + H 100 -9.5 -4.85782 | AATTTGCGTTCCCAA CCGGC CCTC GCCGG TTTCTTTTTACCGCG TERM 3022 3180702 - 3180671 - g 73 -10.8 -3.65812 | opp_overlap 3180682, overlap 3180650 3180672 GCTGTTTGAAGACAA CGGCCGCGACATCG AGGC CGATCTGGCGGCCA TGGGGCCGCGCGCCG Rfer_2878 3180207 - 3181364 + | Rieske (2Fe-2S) protein Rfer_2879 3181442 - 3182329 + | putative transmembrane protein Rfer_2880 3182365 - 3183234 + | 3-mercaptopyruvate sulfurtransferase TERM 3023 3183329 - 3183304 - T 100 -14.1 -4.37991 | opp_overlap 3183309, overlap 3183309 CAAAAACACGCAAAA CAAAAGCCGCC CTGA AGCGGCTTTTG CATGATCAGTCCATG TERM 3024 3183324 - 3183309 - T 95 -8.2 -5.11836 | opp_overlap 3183309, overlap 3183304 ACACGCAAAACAAAA GCCGCC CTGA AGCGGC TTTTGCATGATCAGT TERM 3025 3183309 - 3183324 + T 74 -7.5 -4.21462 | opp_overlap 3183309 3183304 ACACGCAAAACAAAA GCCGC CCTGAA GCGGC TTTTGCATGATCAGT Rfer_2881 3185145 - 3183409 - | hypothetical protein Rfer_2882 3185501 - 3186415 + | hypothetical protein TERM 3026 3186676 - 3186711 + G 71 -7.4 -4.1552 | gap 1 CGCATCGTGCATGTG GGCAAGC-GCGGGGGCT GCC AGTCCACGCCGCAGGCC TTTATTGAAAAACTC Rfer_2883 3186412 - 3187278 + | uroporphyrin-III C-methyltransferase TERM 3027 3187529 - 3187546 + G 70 -3.4 -4.59773 | CAGCGCAGCCAATTT TTTGGG CAACAA CCCGAA TTTTTGCCGCTCGGC TERM 3028 3188276 - 3188219 - g 79 -16.2 -2.72463 | gap 1 ACTGATCGCCAATGA GCTGGC-CCAGCTGGTACCCTCGCGTC TGGCC GACGCCTGGGTGCAAGCGGGCGCCAGC GCCGGCCACGACTGG TERM 3029 3188411 - 3188394 - g 84 -3.3 -5.27923 | gap 1, overlap 3188395 GAAGCCTATAAAAAA GCC-GAGG TCA CCGCTGGC GGCGTGGACACCCGG Rfer_2884 3187344 - 3188588 + | HI0933-like protein rpsU 3188785 - 3188997 + | 30S ribosomal protein S21 TERM 3030 3189105 - 3189081 - f 95 -6.9 -5.39721 | opp_overlap 3189081, overlap 3189049 TGATTAGAGAAAAAA GCTCGCCGGGG ACG CTCAGGCGGGC TTTTTTTTGTCTGCT TERM 3031 3189081 - 3189105 + F 100 -11.3 -6.0427 | opp_overlap 3189049 3189081 TGATTAGAGAAAAAA GCTCGCCGGGG ACG CTCAGGCGGGC TTTTTTTTGTCTGCT Rfer_2886 3189178 - 3189624 + | hypothetical protein Rfer_2887 3191042 - 3189636 - | peptidase U62, modulator of DNA gyrase TERM 3032 3190893 - 3190919 + g 100 -12.2 -5.0538 | overlap 3190894 GCAGCCCTCGGACGC TTCGGCCCCGGC GTC GCTGGCGCCGAG TTTTTTGGCGTGCGC TERM 3033 3190894 - 3190918 + g 88 -13.5 -3.62746 | overlap 3190893 CAGCCCTCGGACGCT TCGGCCCCGGC GTC GCTGGCGCCGA GTTTTTTGGCGTGCG Rfer_2888 3191066 - 3191680 + | hypothetical protein mogA 3191677 - 3192282 + | molybdenum cofactor biosynthesis protein Rfer_2890 3193121 - 3192348 - | serine O-acetyltransferase TERM 3034 3192578 - 3192568 - G 70 -3.2 -4.59773 | CCGTAGGCTGAAAAA CCCA TCT TGGA GGCGGCTTCTTCACG Rfer_2891 3193991 - 3193131 - | RNA methyltransferase TrmH, group 1 TERM 3035 3193595 - 3193554 - G 73 -10.7 -3.64822 | ACGCTCGCAGCCAAA CAGGAAGCCCATGCCGCGC TCGG GCGCTGCAACAGCTGCCTG CACGAGTTCAGACGT TERM 3036 3193796 - 3193812 + g 70 -4.3 -4.57569 | GCGCCTCATCGAGCG TGTCCAC GAT GCGGGCA TTTTTGAGCACGTCC TERM 3037 3193822 - 3193852 + g 71 -7.4 -4.16016 | overlap 3193823 3193825 CGGGCATTTTTGAGC ACGTCCAGGGCGCC ACT GGCGCGCTGAATGG TTTCTTCGCGCCTGA TERM 3038 3194694 - 3194714 + G 88 -6.7 -5.00616 | overlap 3194671 GACCTGGCCTATGTG GCGGCCGGT TAC ACCGACGGC TTTTTTGAGGCCGGC Rfer_2892 3194091 - 3194993 + | inositol-1(or 4)-monophosphatase Rfer_2893 3198366 - 3195022 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3039 3195315 - 3195353 + g 73 -5.2 -4.62336 | gap 1, opp_overlap 3195300 3195310 3195314 3195325, overlap 3195316 CGGTGCCAAAGTCAT CGAGCGAGAAGCGC-AC ACCGAC GTCGCGCAGCTCGCTCA TTTTTGCGATGGCGT TERM 3040 3195835 - 3195820 - G 74 -6.1 -4.56597 | overlap 3195822 GGTCGGGTCGAAAAA GCGCA GCGTGT TGCGC CCCGCAGACTTGGCC TERM 3041 3196241 - 3196209 - G 73 -9.9 -3.56568 | gap 1, opp_overlap 3196210, overlap 3196207 CCAGATCGATAAACA GCAGCGCGC-CG GCGCCGTGTT CGCGCGCGCTGC TCACCAGCGCCTGCT TERM 3042 3196432 - 3196407 - G 74 -3.4 -4.8048 | overlap 3196409 CCTGCACATCAAAAA TTGGCGT-GCCA CTGA TGGCCAC-CCAA GTCAGGCAGCCGACC TERM 3043 3198232 - 3198288 + g 74 -13 -3.14463 | opp_overlap 3198230 3198248, overlap 3198248 CCCGCCCGCAACATC GGCCACGGCCTGCAAACGGCGTTG CGCGTCAAA CAATGCCGTTTGCAGGCGACGGAC TTCCTCGGACGGATT Rfer_2894 3199229 - 3198549 - | cytochrome c, class I Rfer_2895 3200703 - 3199345 - | HI0933-like protein TERM 3044 3199534 - 3199513 - G 77 -10.9 -3.62275 | gap 1, opp_overlap 3199512 3199519 ATCCATCACCTCAAA CAGCA-CGCC ACC GGCGCTGCTG ATGGCTTCGTCGAGC TERM 3045 3200370 - 3200317 - G 82 -12.2 -3.59979 | opp_overlap 3200362 CTGGCGCATGTGAAA CTGCACGCCCGGCCCGGCCACCGG ATGGCG CAGGCGGTGCAGCCAGGCGCGCAG CAGCGGGGCGGCCTT Rfer_2896 3204197 - 3200700 - | UvrD/REP helicase TERM 3046 3200814 - 3200837 + g 85 -12.4 -3.71848 | opp_overlap 3200789 GGCCGCCCGGTAGTC GCGCAGCTGC GCCA GCAGCTCCGC TTGTTCGTGGGGCGC TERM 3047 3201923 - 3201896 - G 71 -7.6 -4.05788 | gap 1, opp_overlap 3201896 CGCCGTCAAAGTAAA TGGCCTGCAGCGC ATC GTGCGGC-GGCCA TTGATCCAGCCAGCC TERM 3048 3202189 - 3202201 + g 78 -2.7 -5.02476 | opp_overlap 3202196, overlap 3202190 TGCACTTCGCAGCAG TCAAT GAG ATTGG TTTTTTCGCCAATCT TERM 3049 3203737 - 3203708 - G 71 -7.7 -4.08216 | gap 1, overlap 3203709 CCATCTGCTGCAAAA CCGCC-AGCGGCGC ACT GCGCAGCAAGGCAG CAAACCAGCTGTGGA TERM 3050 3203892 - 3203858 - G 71 -6.4 -4.18494 | gap 1, opp_overlap 3203864 CATTTTTATCCAAAA CGCCACGCAGCGTCA GCTCCT TGA-GCAGGGTGGCG CGATCGGCCACGGCA TERM 3051 3204407 - 3204394 - R 83 -8.1 -4.42464 | AAGGTGGGAAATAAA CGTGC CGTG GCACG TTGGCCACAAACCGG TERM 3052 3204550 - 3204513 - R 71 -9.7 -3.51411 | overlap 3204501 3204499 3204514 ACGCGGCCAAATGAA GCCCCCCTCTTTCGCCC GGCG GGGCGAGAGAGGGGTTG GGGGAGTGAGTGGGG TERM 3053 3204549 - 3204514 - R 79 -13.2 -2.70525 | overlap 3204501 3204499 3204513 CGCGGCCAAATGAAG CCCCCCTCTTTCGCCC GGCG GGGCGAGAGAGGGGTT GGGGGAGTGAGTGGG Rfer_2897 3207128 - 3204588 - | hypothetical protein TERM 3054 3205053 - 3205014 - G 71 -7 -4.15044 | overlap 3205015 CTCGGCGGCAACAAA GCTGGCGCCGCTGGCC TCGTGCCC GGCCAGCCACTCCAGG TAGCCCGCGCGCACC TERM 3055 3206327 - 3206378 + g 76 -12.9 -3.36749 | gap 2 CCACCAGCGCCACCG GCG-AGCGCCCCGCCGCCAG-GTGC GCCA GCACGCAGGCAGCCGCGCGCTGCGC TTCGTCTTCGGCATC Rfer_2898 3207145 - 3207546 + | thioredoxin TERM 3056 3207696 - 3207706 + F 91 -4 -5.59357 | AGCCTTGACAGGGCT TGAA GAC TTCA TTTTTTTCCTGTCAT TERM 3057 3208255 - 3208236 - g 73 -4.4 -4.63218 | gap 1 CGGGCCTGAAGAAAA CAAACA-CA AGG TGATGTTTG AGAACCTGACGCCGC TERM 3058 3208395 - 3208366 - g 82 -12.7 -3.57144 | GCGCCGATTGGCAAA GGGCAGCGCGCCC TGCT GGTGGCGCCGCCC AAAAGCGGCAAGACG rho 3207856 - 3209118 + | transcription termination factor Rho Rfer_2900 3209170 - 3209493 + | ribosomal protein L31 TERM 3059 3209541 - 3209517 - g 100 -17.1 -4.07687 | opp_overlap 3209517 ACGCTTCGTCCAAAA GGCAGCCCGGG TTA CCCGCGCTGCC TTTTTTTCATCAAAC TERM 3060 3209517 - 3209541 + G 100 -17.1 -5.52384 | opp_overlap 3209517 ACGCTTCGTCCAAAA GGCAGCCCGGG TTA CCCGCGCTGCC TTTTTTTCATCAAAC TERM 3061 3209591 - 3209626 + G 100 -13.2 -5.48213 | CCCGCCATCGTCGCC CAAGGCGCCGTGCAGC GTTT GCCGCGCGTTGCCTTG TTTTTGTTTTGCATC TERM 3062 3210035 - 3210049 + G 72 -11.4 -3.32844 | GCTTTCATCGCTTGC CTGGGC CTG GCCCAG TTGTCCCATGAAACC TERM 3063 3210306 - 3210264 - g 71 -6.1 -4.3255 | gap 2, opp_overlap 3210299, overlap 3210265 3210266 GCTCCAATGAACAAA GCGTGACGCGGCGCGCGGCCA TGT TGGCCGC-CGGGGCGAT-CGC AATCGTCACGCTGCT Rfer_2901 3209474 - 3211279 + | putative inner membrane transmembrane protein TERM 3064 3211720 - 3211686 - g 73 -4.3 -4.65895 | gap 1, opp_overlap 3211696 3211699, overlap 3211688 TGCTGGATGTAAAAA TCTGC-CATGACTACC GCGT GGTGGTCTTGAGCAAA CGAAATAACAGGCTG TERM 3065 3212196 - 3212186 - g 73 -4.6 -4.59109 | overlap 3212188 GACATCTCTGAAAAA CGCG TCC CGCA AGACGGCAAGATGAA TERM 3066 3212373 - 3212361 - g 77 -3.3 -4.91852 | CCGAGGAAAAAGAAA GGCTG CTG CAGGC CATTGGGCGACCGTA Rfer_2902 3211403 - 3213136 + | type II secretion system protein E TERM 3067 3213701 - 3213724 + G 81 -4.6 -4.91109 | overlap 3213704 TCCTGATCGTCGCTT TTGTGGTCAC GGCT GTGATCATGA TTTTTGTCGTGCCGG Rfer_2903 3213157 - 3214374 + | type II secretion system protein Rfer_2904 3214374 - 3215216 + | prepilin peptidase Rfer_2905 3215220 - 3215858 + | dephospho-CoA kinase Rfer_2906 3215864 - 3216622 + | hypothetical protein Rfer_2907 3216619 - 3216837 + | hypothetical protein Rfer_2908 3217356 - 3216877 - | NUDIX hydrolase TERM 3068 3217265 - 3217249 - G 78 -5 -4.77157 | overlap 3217250 GGAAGTGAGCAAAAA GCCGCC ATCCG GGCGGA TCAGAACACCAACCG Rfer_2909 3218231 - 3217353 - | hypothetical protein argJ 3219457 - 3218228 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 3069 3218531 - 3218514 - G 85 -3.4 -5.40072 | gap 1 TCGCTGGCAAAAAAA GCCGTCT TCACC AG-CGGC GAATGGGCAACGGCA TERM 3070 3218634 - 3218647 + g 85 -2.3 -5.40072 | overlap 3218626 3218635 TCGCCATCGCGCACG ATGGC TTGC GCCAG TTTTTTTGCCACGCC TERM 3071 3218894 - 3218870 - G 78 -10.7 -3.85698 | GTCGGTCGCCATAAA GCCCAGCATGG TGG CCATATTGGGC CGAATCATGCCCGCG TERM 3072 3219533 - 3219507 - R 100 -10.1 -5.05782 | opp_overlap 3219507 3219504 ACTCATCCCAAAAAA TGGGCCGTGGC AATCA ACCAGGGCCCA TCGATTTGGCGCGAA Rfer_2911 3222320 - 3219555 - | preprotein translocase subunit SecA Rfer_2912 3223454 - 3222462 - | peptidase M23B Rfer_2913 3223481 - 3223792 + | hypothetical protein TERM 3073 3224437 - 3224415 - g 85 -5.4 -5.15634 | overlap 3224416 GAGTTGATCAAAAAA GTGGAGCCGC TGG GCAGCGCCAA GTACGTGGAGTTTGT Rfer_2914 3223896 - 3224903 + | putative sulfite oxidase subunit YedY Rfer_2915 3224903 - 3225544 + | ferric reductase-like transmembrane component-like Rfer_2916 3226873 - 3225572 - | diaminopimelate decarboxylase TERM 3074 3226944 - 3226959 + H 77 -8.2 -4.08216 | overlap 3226956 GGGCAGTCTGCGTTT CGGGCC AGGT GGTCCG TTTTGCAACGGCTGG TERM 3075 3227378 - 3227410 + G 81 -13.4 -3.39895 | overlap 3227381 CCAATTTGTCGCGCT GTGCCAGCGAGCAG GCGGG CTGCCCGCTGGTGC TTAATTCCTGAACAA TERM 3076 3227381 - 3227407 + G 75 -13.7 -2.85896 | overlap 3227378 ATTTGTCGCGCTGTG CCAGCGAGCAG GCGGG CTGCCCGCTGG TGCTTAATTCCTGAA Rfer_2917 3227092 - 3227421 + | frataxin-like Rfer_2918 3229804 - 3227411 - | penicillin-binding protein 1A TERM 3077 3227748 - 3227778 + g 71 -8.3 -4.13945 | gap 1, opp_overlap 3227747 3227750 TGGAATCCCGCAAAC CAGGCATCCACCGA ATCA TTGGTGG-TGCCGG TTTTGCCGTACAAGT TERM 3078 3229259 - 3229231 - G 77 -3.1 -4.88736 | opp_overlap 3229223 3229231 GATTACCCAGAAAAA TCTGATTCATGTA GAT TTCAAGAATCTGA TCCTTGGTCAATAAA TERM 3079 3231121 - 3231090 - g 85 -3.8 -5.40072 | opp_overlap 3231091, overlap 3231091 TTCGTTTGAAAAAAA TGACGCGAGA AGCCCCGTCTTA TCTCACGTCA TGCGGACTGGCCCTG Rfer_2919 3230117 - 3231154 + | type IV pilus assembly protein PilM TERM 3080 3231232 - 3231249 + G 78 -14.1 -3.1876 | GTTAGTTTGGGGTTG GCCGCCC TTGC GGGCGGC TTACTGGCTGGCATT Rfer_2920 3231151 - 3231786 + | fimbrial assembly Rfer_2921 3231799 - 3232470 + | pilus assembly protein, PilO Rfer_2922 3232467 - 3233009 + | pilus assembly protein, PilQ TERM 3081 3234169 - 3234151 - g 72 -11.7 -3.32647 | GCTGAATTACACCAA GGCGGCA GACGT TGCCGCC CAGCTGACCGCCACC TERM 3082 3234461 - 3234478 + G 74 -11.3 -3.53563 | GGCTATCAACTCTCT GGCGACA ATCG TGTCGCC TTTGGCACCAGCTAT Rfer_2923 3233006 - 3235138 + | type II and III secretion system protein TERM 3083 3236241 - 3236221 - g 71 -8.3 -4.04141 | GAACAACCAATCAAA GCACTATTG AAG CGATAGTGC GAGATTCCAATGGCA Rfer_2924 3235155 - 3237056 + | Ig-like, group 1 TERM 3084 3237121 - 3237096 - g 72 -13.2 -2.64155 | opp_overlap 3237086 3237086, overlap 3237093 3237092 GTTCCGGCAAATCCA CCGTCGGGCG TCAACT CGCCCGGCGG CTGCAGCTTCCCTTC Rfer_2925 3237053 - 3237592 + | shikimate kinase Rfer_2926 3237589 - 3238695 + | 3-dehydroquinate synthase TERM 3085 3239285 - 3239326 + G 76 -12.3 -3.30124 | opp_overlap 3239309 3239310 3239313, overlap 3239272 CCCGGTGGCGTCGGC CTGCGTTTCCTGGATGG CACACAAC CCAGCCTGGAAGCGCAG TTGTGCAACCTGGCC Rfer_2927 3238763 - 3239935 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 3086 3240107 - 3240073 - g 70 -10.1 -3.48395 | gap 1, overlap 3240074 ACCCGGCTGACAGAA GCGGCGACA-ACAACC GTCT GGTTATATGTCGCCGA ACTGGCCAAACAGCT TERM 3087 3240106 - 3240074 - g 72 -13.6 -2.68823 | gap 1, overlap 3240073 CCCGGCTGACAGAAG CGGCGACA-ACAACC GTCT GGTTATATGTCGCCG AACTGGCCAAACAGC TERM 3088 3240420 - 3240408 - g 81 -5.5 -4.84359 | CCACCCGGAGAAAAA CACCT TGC AGGCG ATTCGCTTTGACTAC Rfer_2928 3239974 - 3240627 + | hypothetical protein TERM 3089 3241081 - 3241091 + G 71 -8.2 -4.11216 | opp_overlap 3241070, overlap 3241077 GACAGCATCGACCGC GCCG TGG CGGC TTTTCCGGATGCCGA Rfer_2929 3240637 - 3241257 + | hypothetical protein TERM 3090 3241289 - 3241273 - g 90 -5.7 -5.19998 | overlap 3241275 AGAAGCAAAACAAAA CGCCAGC CCC GCAAGCG CTGGTCGACGAAATC TERM 3091 3241572 - 3241540 - g 80 -3.4 -5.055 | gap 1, overlap 3241564 TCAAGGCGCAAAAAA CAGGGCACATCTACG GCAT CG-AAACCCGCCCTG AGCTGGTGCAAAAGT TERM 3092 3242031 - 3241991 - g 72 -2.3 -4.79223 | overlap 3242027 GCACAGCATGAAAAA CGAGCTCATACTGGCGCGC TAC ACGGGTCAGAAAAAGCGCG CGGCGGCGGAGCGCT TERM 3093 3242045 - 3242027 - g 81 -5.8 -4.83615 | opp_overlap 3242044, overlap 3241991 CACGGGTCAGAAAAA GCGCGCGG CGG CGGAGCGC TTGCAGGCAATTCTG Rfer_2930 3241254 - 3242114 + | hypothetical protein Rfer_2931 3242136 - 3242588 + | 17 kDa surface antigen Rfer_2932 3242738 - 3243442 + | hypothetical protein TERM 3094 3246795 - 3246778 - g 70 -4.1 -4.63527 | gap 1, overlap 3246779 3246780 TCACGACCTGAAAAA CGTGGCGC CGC ACGCCA-G CATCAGCGTCAAGCT TERM 3095 3247351 - 3247368 + G 71 -5.5 -4.41348 | gap 1, opp_overlap 3247337 3247347 3247346 ACACTGGAAAGCCAG CGGCCTGG ACT TC-GGCCG TTTGTTTGCGCAACC TERM 3096 3248296 - 3248282 - g 75 -2.8 -4.88067 | ATTCATGCACAAAAA GAGG CTCTGGC CCTC ACCAGTCGTGCTCAG Rfer_2933 3243614 - 3248347 + | glutamate synthase (ferredoxin) TERM 3097 3248486 - 3248514 + G 95 -13.8 -4.07568 | opp_overlap 3248484 3248481 AGGCCAACAAGCAGG CGGCGCGCTGCA TGGAC TGCGGCACGCCG TTTTGCAGCAGCGGC TERM 3098 3248893 - 3248883 - g 85 -6.8 -4.82901 | opp_overlap 3248885 3248886, overlap 3248884 3248886 CCTGTTCGAGAAAAA CGAC CGC GTCG GCGGCTTGCTGCGTT gltD 3248359 - 3249825 + | glutamate synthase subunit beta TERM 3099 3249902 - 3249927 + F 100 -9 -5.00616 | gap 1, overlap 3249906 TAATCCCTTATGATG CAGGGGCCGGG CAAGA CCCGGCCT-TG TTTTTTCAACACCCC TERM 3100 3249906 - 3249924 + F 100 -13.1 -4.61482 | overlap 3249902 CCCTTATGATGCAGG GGCCGGG CAAGA CCCGGCC TTGTTTTTTCAACAC Rfer_2935 3249945 - 3250760 + | ABC transporter related Rfer_2936 3250757 - 3251539 + | hypothetical protein Rfer_2937 3251567 - 3252055 + | hypothetical protein TERM 3101 3252068 - 3252053 - f 74 -2.5 -5.0133 | GATGGGGTCAAAAAA TGACC GGGAGT GGCCA AATGCGTCAAAGGGT Rfer_2938 3252070 - 3252903 + | VacJ-like lipoprotein TERM 3102 3253342 - 3253328 - g 74 -11.4 -3.54676 | ACGCACTGAAATCAA GGGTCG GGG CGACCC GGTTCAACTCGACTA TERM 3103 3253483 - 3253465 - g 80 -11.8 -3.72695 | opp_overlap 3253460, overlap 3253470 AGTTTGCGCAGGAAA TCAATGCC AAA GGCATTGA CGGCCTGATTGCCAC Rfer_2939 3252966 - 3253538 + | toluene tolerance Rfer_2940 3253535 - 3253837 + | sulfate transporter/antisigma-factor antagonist STAS Rfer_2941 3253847 - 3254824 + | ABC transporter related TERM 3104 3255180 - 3255192 + G 70 -4.7 -4.57073 | overlap 3255181 CGGTGTGGGTGTGTT TGCCG TAT CGGCC TTTTTCACGGACATC TERM 3105 3255336 - 3255351 + G 79 -7.6 -4.57073 | CTTTCAGAACTTTGT GGTCAT GCCC ATGACC TTTTTGAGCGGCGTC Rfer_2942 3254821 - 3255576 + | hypothetical protein Rfer_2943 3255602 - 3255844 + | BolA-like protein TERM 3106 3256881 - 3256895 + G 74 -5.7 -4.56775 | CGCACGGCACGGCAG TGGTC ACCGA GACCA TTTTTGAGAACCGGT Rfer_2944 3255905 - 3257170 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase hisG 3257180 - 3257818 + | ATP phosphoribosyltransferase catalytic subunit TERM 3107 3258176 - 3258166 - g 88 -2.4 -5.47399 | CGAAGCGCAAAAAAA GGCC TGT GGCG AGAGCTGGAGCTACG TERM 3108 3258967 - 3258993 + G 72 -2.2 -4.7254 | gap 1, opp_overlap 3258967, overlap 3258965 CGCCGGACCGAACCA CGTGCTG-CCC ACCAGC GGCACAGCGCG TTTTTCATCACCACT Rfer_2946 3257837 - 3259180 + | histidinol dehydrogenase TERM 3109 3259468 - 3259511 + G 74 -11.1 -3.53012 | gap 3 GACGAGCTCATCAGC CTGCTGGCGCTGGCCTGCGCCG TGC CGGC-CAG-C-AGCGCCAACGG TTTCAAAAAGGCCAG TERM 3110 3259536 - 3259521 - g 89 -10.4 -4.58283 | opp_overlap 3259534 CAACGGTTTCAAAAA GGCCAG TGTG CTGGCC CCGGTGCCGGGCTTT TERM 3111 3259764 - 3259797 + G 71 -8.1 -4.07568 | gap 1 AGCGGGTGCGCAAGG CGGCCTGGTGGTCATC GAC GAAGCCTACCAG-CCG TTTTCCAGCAAAAGC TERM 3112 3260263 - 3260250 - g 77 -8.1 -4.41897 | AACAAAGGATGAAAA CCAGC AGAT GCTGG CGGCGCTGCGAAACT Rfer_2947 3259177 - 3260286 + | histidinol-phosphate aminotransferase TERM 3113 3260629 - 3260606 - g 84 -3.8 -5.24129 | gap 1, opp_overlap 3260607, overlap 3260607 GTTGGCGACAAAAAA GGCATACGCCG TTA CGGC-CATGCT TATGTGCCGCTGGAC Rfer_2948 3260321 - 3260935 + | imidazoleglycerol-phosphate dehydratase TERM 3114 3261628 - 3261618 - g 83 -4.6 -5.03314 | TTCATCCTGAAAAAA GCGC CGA GCAC GGTCTAGCCCTCTAC Rfer_2949 3260987 - 3261670 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Rfer_2950 3261815 - 3262555 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Rfer_2951 3262571 - 3263371 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 3115 3263597 - 3263577 - g 81 -4.5 -5.00884 | opp_overlap 3263577 AGGCCCTGCAAAAAA CGGCTGAGC TGG GCCGGGCCG TGTACTTCAGCCGCT Rfer_2952 3263456 - 3263845 + | phosphoribosyl-AMP cyclohydrolase TERM 3116 3264015 - 3263997 - g 85 -2.4 -5.40072 | gap 1, overlap 3264008 CGTTCCTGAAAAAAA TCGG-CG AGGAAG CGACCGA GGTCGTGATGGCCGC Rfer_2953 3263852 - 3264244 + | phosphoribosyl-ATP pyrophosphatase Rfer_2954 3264241 - 3264657 + | putative transmembrane protein Rfer_2955 3264657 - 3265028 + | histidine triad (HIT) protein Rfer_2956 3265097 - 3265336 + | twin arginine-targeting protein translocase TERM 3117 3265668 - 3265640 - g 78 -4.4 -4.84359 | gap 1, overlap 3265642 CGATTTCGAGAAAAA CTG-GGCCGACGC CACC GCGCAGGCCGCCG ACACACCGTTCAATG tatB 3265380 - 3265844 + | sec-independent translocase TERM 3118 3266058 - 3266077 + G 78 -4.9 -4.72986 | overlap 3266063 GCTCGCGCATGATCG CGGTGGG CGTGGT CTCGCCG TTTTTGGTGCCGATC TERM 3119 3266188 - 3266225 + G 78 -2.8 -5.09895 | gap 3, opp_overlap 3266179 3266188 3266180 3266192, overlap 3266193 3266194 3266195 TTACAAGCACGAGAA GAAGCTTGTGCT-GCCGCT GGT GGCGGCAAGCACC-G-TTC TTTTTTACATGGGTG TERM 3120 3266193 - 3266222 + G 78 -7.1 -4.64763 | gap 1, opp_overlap 3266179 3266188 3266180 3266192, overlap 3266188 3266194 3266195 AGCACGAGAAGAAGC TTGTGCT-GCCGCT GGT GGCGGCAAGCACCG TTCTTTTTTACATGG Rfer_2958 3265844 - 3266635 + | Sec-independent protein translocase TatC Rfer_2959 3267785 - 3266643 - | peptidase S1 and S6, chymotrypsin/Hap TERM 3121 3267808 - 3267794 - H 79 -2.7 -5.18726 | overlap 3267795 GTTTCATAAGAAAAA CGGGC TGAAC GCCCT TGCAGTAATGAGGTG Rfer_2960 3267935 - 3268327 + | hypothetical protein Rfer_2961 3268384 - 3269142 + | hypothetical protein TERM 3122 3269204 - 3269166 - g 83 -4.4 -5.14563 | overlap 3269167 TGCCCCATGAAAAAA CCCATTGCCATCACACTC GGC GATTGCGCCGGCATTGGC CCTGAAATCATTGCC Rfer_2962 3269157 - 3270206 + | 4-hydroxythreonine-4-phosphate dehydrogenase Rfer_2963 3270694 - 3270266 - | large conductance mechanosensitive channel protein TERM 3123 3270449 - 3270464 + g 74 -6 -4.57569 | overlap 3270451 GTTGCCGTAGGCCAG GACCGG AACG CCGGCC TTTTTCAGCGCGTCC TERM 3124 3270578 - 3270537 - G 70 -3.7 -4.69464 | gap 1, opp_overlap 3270529 3270528, overlap 3270529 AAAAGATTGGAAAAA TCCAGTTTT-CCGATGATCG CAC CGACCACCGGCATCACCAGA TCGCCCACCACGGAT TERM 3125 3270938 - 3270960 + G 76 -10.4 -3.75115 | overlap 3270934 CAGTTGCGCCGGCGC CGTCGGCGGC ATT GCCGCAGTCG TTCCTTTTGTCAGCA Rfer_2964 3270858 - 3271472 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Rfer_2965 3271484 - 3272884 + | cytochrome b/b6-like Rfer_2966 3272900 - 3273673 + | cytochrome c1 TERM 3126 3273687 - 3273718 + F 80 -9.4 -4.09685 | overlap 3273692 AGTGCGGGTTTGACA CTTGGGTCGCACCT GATA AGGCGCGACTTGAG TTTTGCGGAGTGGGG TERM 3127 3273692 - 3273713 + F 70 -10.1 -3.36823 | overlap 3273687 GGGTTTGACACTTGG GTCGCACCT GATA AGGCGCGAC TTGAGTTTTGCGGAG TERM 3128 3273725 - 3273754 + F 95 -10.8 -4.55128 | gap 1 CGACTTGAGTTTTGC GGAGTGGGGTTGC ATTGA GCA-TCCCACTCC TTTTAGTTTCAGCAT Rfer_2967 3273829 - 3274440 + | glutathione S-transferase-like Rfer_2968 3274459 - 3274986 + | ClpXP protease specificity-enhancing factor TERM 3129 3275138 - 3275162 + F 100 -7.9 -5.4833 | gap 1, opp_overlap 3275138 GAAACTCTTCTAAAA CCCGC-CTTC TCCACT GAAGAGCGGG TTTTTTCTTGCCTGA TERM 3130 3275162 - 3275138 - f 74 -7.9 -4.10453 | gap 1, opp_overlap 3275138 GAAACTCTTCTAAAA CCCGC-CTTC TCCACT GAAGAGCGGG TTTTTTCTTGCCTGA TERM 3131 3275732 - 3275720 - g 73 -4.8 -4.65895 | overlap 3275722 GTGGTGACCGAAAAA TCGC CGATC GCGA CCAAGGCGCAACTGG Rfer_2969 3275333 - 3276121 + | extracellular solute-binding protein TERM 3132 3276153 - 3276194 + F 70 -6.6 -4.08557 | gap 3, overlap 3276158 GACTGCCACCAGTCA TCCGGCCATCCGGCAGGCGCG CTG TGCGTCTGCCCG--G-CCGGA TTCTTGTTTCCGGGC TERM 3133 3276490 - 3276502 + G 73 -9.1 -3.9712 | GCCTGACTTTCCGTC GGCGA TCC TCGCC TTTGTGCTGAACTAC TERM 3134 3276787 - 3276799 + G 78 -6.9 -4.6955 | GACAATGCCGTTTGT GGTGG CGG CCGCC TTTTATCTGTTCATG Rfer_2970 3276224 - 3276877 + | amino acid ABC transporter permease Rfer_2971 3276870 - 3277634 + | ABC transporter related TERM 3135 3278264 - 3278231 - g 77 -8.1 -4.41616 | gap 1, overlap 3278239 ATGTGCTCAAAGAAA GCTTCAAAGCCACCAG TTC CTGGTGGCA-CGAGGC AAGCCAGGTCGAGGG TERM 3136 3278257 - 3278239 - g 90 -14.6 -3.671 | overlap 3278231 AAAGAAAGCTTCAAA GCCACCAG TTC CTGGTGGC ACGAGGCAAGCCAGG TERM 3137 3278292 - 3278309 + G 85 -2.7 -5.40072 | gap 1, overlap 3278295 GGGGGTGTCGAGCCA TC-ACCGC CAT GTGGTTGA TTTTTTTAACCGGCA TERM 3138 3279573 - 3279584 + G 71 -7.2 -4.1673 | ACCTGATGACTGGGC GGCG CATG CGCC TTTGTTCGAGGGTTC Rfer_2972 3277891 - 3279729 + | Poly-beta-hydroxybutyrate polymerase-like Rfer_2973 3279719 - 3280156 + | hypothetical protein TERM 3139 3280302 - 3280289 - g 71 -6.7 -4.1899 | TGATTTGATTGAAAA CGTCA CTTT TGACG AAATAACACTGGGGC TERM 3140 3280525 - 3280537 + G 70 -3.3 -4.63486 | opp_overlap 3280526, overlap 3280526 GCACCATTTACCAAG AGCAG GTA CTGCA TTTTGTTCAACCGGT Rfer_2974 3280254 - 3281675 + | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase TERM 3141 3282832 - 3282856 + G 73 -9.2 -3.89412 | gap 1, overlap 3282834 GACGAAGGGCTGGTG GC-GGCGCGCG AAGC CGCGCGCCTGA TTTGATGATTTCGGT TERM 3142 3282834 - 3282853 + G 83 -16.4 -3.01022 | overlap 3282832 CGAAGGGCTGGTGGC GGCGCGCG AAGC CGCGCGCC TGATTTGATGATTTC Rfer_2975 3281686 - 3282861 + | acetate kinase Rfer_2976 3282938 - 3283681 + | pseudouridine synthase, Rsu Rfer_2977 3283710 - 3284606 + | putative transmembrane protein TERM 3143 3285064 - 3285083 + G 71 -6.4 -4.15565 | gap 1, overlap 3285065 GGCTTCAGCTGGGGC TCGGTGCAC TTT GTGC-CCGG TTTTCCGGTCATGGC Rfer_2978 3284587 - 3285411 + | molybdopterin binding domain-containing protein TERM 3144 3286008 - 3286025 + G 75 -2 -4.946 | gap 1 GGAGACACCGCCTTT TTC-GGC CCTGA GCCAGAA TTTTTCATCTTTGAT TERM 3145 3286572 - 3286606 + G 80 -10.1 -4.07687 | opp_overlap 3286571 3286572 AACGCCATCACCAAC CCCGGCACCA-ACAGCT ACA AGC-GTCTGGTGCCCGG TTTTGAGGCCCCGGT Rfer_2979 3285624 - 3287039 + | glutamine synthetase, type I TERM 3146 3287108 - 3287139 + F 95 -14.6 -3.68619 | opp_overlap 3287115, overlap 3287115 TGACAAGGAATGTGG TAAAAAAGGACGGC ATTT GCCGTCCTTTTTCA TTTGCGTGGATTGAA TERM 3147 3287132 - 3287115 - f 100 -12.7 -5.03145 | opp_overlap 3287108 3287115 GAATGTGGTAAAAAA GGACGGC ATTT GCCGTCC TTTTTCATTTGCGTG TERM 3148 3287115 - 3287132 + F 100 -12.7 -5.00138 | opp_overlap 3287115, overlap 3287108 GAATGTGGTAAAAAA GGACGGC ATTT GCCGTCC TTTTTCATTTGCGTG Rfer_2980 3287201 - 3287743 + | putative signal peptide protein TERM 3149 3288561 - 3288540 - g 72 -10.9 -3.31248 | gap 1, opp_overlap 3288541 3288545, overlap 3288541 CAACATTGCGCACAA CGCCTGCCAG GCG CTGGCAG-CG CAGATAGCGCAAGGC TERM 3150 3288541 - 3288590 + G 80 -9.8 -4.07687 | gap 1, opp_overlap 3288540 3288541 3288568, overlap 3288545 AACATTGCGCACAAC GCCTGCCAGGCGCTGGC-AGCGC AGATA GCGCAAGGCAGCGCCTGCCTGAC TTTTCGCACGCGAAT Rfer_2981 3287749 - 3288855 + | signal transduction histidine kinase, nitrogen specific, NtrB Rfer_2982 3288890 - 3290452 + | nitrogen metabolism transcriptional regulator, NtrC, Fis family Rfer_2983 3291332 - 3290508 - | exodeoxyribonuclease III Rfer_2984 3291944 - 3291348 - | putative transmembrane protein TERM 3151 3291613 - 3291627 + g 77 -3.4 -4.95155 | overlap 3291615 TAGCGGTCTATCTTG GCCTGG TAG CCGGAC TTTTTATCCTCTGGC Rfer_2985 3292439 - 3291945 - | dihydrofolate reductase Rfer_2986 3293273 - 3292440 - | thymidylate synthase TERM 3152 3293333 - 3293292 - R 74 -2.1 -5.03201 | gap 1, opp_overlap 3293318, overlap 3293293 AATAAGAACCAAAAA GGGTGTC-CAGTGCGACGAC GAT GTCGTCGCGGTGAGTCAACA GACTGGCCACGGGTT Rfer_2987 3293589 - 3293275 - | CcdB-like toxin protein Rfer_2988 3293840 - 3293601 - | potential post-segregation antitoxin Rfer_2989 3295333 - 3293900 - | FAD linked oxidase-like Rfer_2990 3295673 - 3295338 - | membrane protein-like TERM 3153 3295689 - 3295704 + H 74 -2.4 -5.08731 | opp_overlap 3295657, overlap 3295664 3295678 GCGCGTGCCGCGCAC CTGTGC TGAG GCGCTG TTTTGTTCTTTGTTC TERM 3154 3295957 - 3295968 + G 76 -5.8 -4.60924 | overlap 3295937 3295936 TGCCTTTGGTCACGG TGGC ACTG GCCA TTTTTACCGCCTTTC TERM 3155 3296978 - 3296967 - g 70 -3.6 -4.63184 | AATTTATGGGAAAAA GGAC GCTG GCCC CTGTTGAACGTACGT Rfer_2991 3295755 - 3297005 + | ribonuclease BN, putative TERM 3156 3297353 - 3297401 + G 93 -11 -4.41616 | gap 2 TGGTGCTGGTCGTCG CGGGCCTGCTGGTCGCGCACGAGC TGC GCACGT-CG-GACTATCAGGCGCG TTTCTTTGCCGGGCT Rfer_2992 3297274 - 3300318 + | glycosyl transferase family protein Rfer_2993 3301375 - 3300350 - | asparaginase TERM 3157 3301536 - 3301518 - g 75 -8.2 -4.24342 | CCCGCCAGCAACAAA TTCTGGAC CTG ATCCAGAA CGCCATTACCCTCAC TERM 3158 3301572 - 3301593 + G 73 -10.1 -3.63627 | CGCCACCGACCCGGG CCGAGATCG CCAC CGAGCTCGG TTTCAGGTCTGCCAA Rfer_2994 3301478 - 3302152 + | LexA repressor Rfer_2995 3302186 - 3302545 + | hypothetical protein Rfer_2996 3302639 - 3303652 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Rfer_2997 3305101 - 3303740 - | three-deoxy-D-manno-octulosonic-acid transferase-like TERM 3159 3305071 - 3305057 - G 100 -10 -4.81249 | overlap 3305049 TTTCAAACGCAAAAA TGGCTG CGC CAGCCA CATGACCACGCTGTA Rfer_2998 3306159 - 3305098 - | lipopolysaccharide heptosyltransferase I Rfer_2999 3307583 - 3306156 - | phosphomannomutase TERM 3160 3306623 - 3306649 + g 76 -7.2 -4.56883 | overlap 3306619 AGAAAATGTGGCCGC TCATCTCGCCTC CGA GCGGTGAGTTGA TTTCTTTCATCTTGG TERM 3161 3308833 - 3308848 + G 76 -7.5 -4.56597 | opp_overlap 3308825 3308826 ATCGAAACCCCGATC GCCGG GCTGAA CCGGC TTTTTCCAAGCGCCG TERM 3162 3309180 - 3309144 - g 89 -10 -4.66953 | overlap 3309117 3309135 3309157 GCAAGACGCCAAAAA CCCGGCCAAAGAAGCG CAGGC CGCGTCACTGGCCTGG CAACCGTGGCGCAGC Rfer_3000 3307705 - 3309252 + | AraC family transcriptional regulator Rfer_3001 3309298 - 3309831 + | methylated-DNA--protein-cysteine methyltransferase Rfer_3002 3309828 - 3310724 + | hypothetical protein TERM 3163 3310744 - 3310758 + F 71 -4.2 -4.57837 | overlap 3310744 CCATTGGCCTGGTTA TGGGCG ACC CGTTCA TTTTTCAAGCGCTGT TERM 3164 3310885 - 3310872 - f 83 -8.1 -4.42464 | AAGGTGGGAAATAAA CGTGC CGTG GCACG TTGGCCACAAACCGA TERM 3165 3311028 - 3310991 - f 71 -9.7 -3.5489 | overlap 3310980 3310992 ACAAGGCCAAATGAA GCCCCCCTCTTTCGCCC GGCG GGGCGAGAGAGGGGTTG GGGGAGTGAGTGGGG TERM 3166 3311027 - 3310992 - f 79 -13.2 -2.72211 | overlap 3310980 3310991 CAAGGCCAAATGAAG CCCCCCTCTTTCGCCC GGCG GGGCGAGAGAGGGGTT GGGGGAGTGAGTGGG TERM 3167 3311384 - 3311338 - g 72 -2.8 -4.72986 | opp_overlap 3311370 GAGGTGCAGGAAAAA GCCGGCTTTGTGC-CCAACGTC TTTCT GGCGCTGGCGCGCCG-GCCGGC CGAGTGGCGCGCCTT TERM 3168 3311370 - 3311397 + G 100 -10.4 -5.08824 | opp_overlap 3311338 CGTCTTTCTGGCGCT GGCGCGCCGGCC GGCC GAGTGGCGCGCC TTTTTTGCCTACCAC TERM 3169 3311570 - 3311547 - g 77 -3.1 -4.9218 | gap 1 CATCTACGAGAAAAA GCC-CTTGGT GGCCG ACCAGGTGGC GGTGAACTACCGCAA Rfer_3003 3311254 - 3311829 + | hypothetical protein Rfer_3004 3312030 - 3311878 - | hypothetical protein TERM 3170 3311973 - 3311959 - G 84 -5.6 -5.00884 | opp_overlap 3311970, overlap 3311946 3311960 AGCGGTCTCAAAAAA TGCGAC CAG GTCGCT GAGCCAGAGTTTGAA Rfer_3005 3312297 - 3312701 + | hypothetical protein TERM 3171 3312764 - 3312749 - g 70 -3.2 -4.60041 | gap 1, overlap 3312751 AGCCAGGGTGAAAAA GACACGG TGC CCGCG-C TGCCAAGCGATGCCC TERM 3172 3313170 - 3313131 - g 82 -12.9 -3.62591 | gap 1, overlap 3313123 CGGACAACCCGGAAA TCGA-GGCGCGCTTCATG CGACT CAAGGAGCGCGCCGTCGA GGTGCTGCAAATGCT TERM 3173 3314005 - 3313991 - g 81 -4.2 -5.0133 | CAGGCGCTGAAAAAA GCCG GCACCCG CGGC TGCGTCATGATGCTC TERM 3174 3314267 - 3314251 - g 72 -2.2 -4.72497 | gap 1, overlap 3314252 TACGCAGGAAGAAAA GCGCGAG ATTG CCCG-GC GATACCTGGTGACGC TERM 3175 3314945 - 3314922 - g 83 -2.2 -5.30155 | GCATCAAGGAAAAAA TGCTTGCCGC CCTG GCCGCCGGCA TCAAAAAAGTCATGT Rfer_3006 3312698 - 3315091 + | ATP-dependent protease La Rfer_3007 3315145 - 3315354 + | hypothetical protein Rfer_3008 3315768 - 3315448 - | transport-associated TERM 3176 3315759 - 3315709 - G 82 -11.3 -3.87815 | gap 1, opp_overlap 3315714, overlap 3315753 CTCCAGCGGTAGAAA TCT-GTGTTGATCGGGCTTCACGG TCGA CCATGAAGCCCGATTAACTTTAGA TAAAGCCACTGGCCG TERM 3177 3315714 - 3315753 + g 100 -20.2 -3.64703 | opp_overlap 3315709 GCGGTAGAAATCTGT GTTGATCGGGCTTCACGG TCGA CCATGAAGCCCGATTAAC TTTAGATAAAGCCAC Rfer_3009 3315936 - 3317570 + | chaperonin GroEL TERM 3178 3317961 - 3317934 - g 76 -7 -4.52589 | gap 1, overlap 3317936 3317959 CTCGGGGAGATAAAA CCCTTGCTG-AGC AGT GCCGCAGCAAGTG CGCTCGAGCGCGCCG Rfer_3010 3317595 - 3318053 + | hypothetical protein Rfer_3011 3320315 - 3318546 - | ribonucleotide reductase large subunit TERM 3179 3319573 - 3319554 - G 76 -12.8 -3.28924 | CAGTTTCTCCCACAA GGCGCGCG CGGG CACGCGCC GGTGCACCATGCACA Rfer_3012 3322265 - 3320406 - | diguanylate cyclase with PAS/PAC sensor TERM 3180 3321053 - 3321039 - G 84 -5.6 -5.0133 | overlap 3321041 CAGCGGGGTAAAAAA CGGCTG GAC CAGCTG AAAATAGGGCAGCTC Rfer_3013 3324885 - 3322252 - | MCP methyltransferase, CheR-type TERM 3181 3322428 - 3322456 + g 76 -13.9 -3.08032 | overlap 3322425 GCATGGTGCGCACCT TGTACCAGCGGTC ATC GACCGTGGGTACA TCCTTTTCACAAAAA TERM 3182 3323057 - 3323001 - G 88 -6.5 -4.88918 | gap 2, overlap 3323004 GGACGTCAAAGAAAA CAATCAGCG-CCAGCCCGCGCAGG-GC TGCTG GCTCCTGCAAGGGCTGGACGATGACAT CAACATACTGCACCC TERM 3183 3323054 - 3323004 - G 100 -14.8 -4.54026 | gap 2, overlap 3323001 CGTCAAAGAAAACAA TCAGCG-CCAGCCCGCGCAGG-GC TGCTG GCTCCTGCAAGGGCTGGACGATGA CATCAACATACTGCA TERM 3184 3324450 - 3324424 - G 76 -13.6 -3.00946 | overlap 3324394 3324421 CGTTTGCACAAAGCA CGCGCCAGCGGC CTG GCGGATGGCGCG CAGGCCCTGGGTGCC Rfer_3014 3325418 - 3324999 - | thioesterase superfamily protein TERM 3185 3325027 - 3325041 + g 71 -5.6 -4.4078 | TCGCGCATCCAGTCG GGCAAC GTG GTGGCC TTTTGCTTCGGAAAA Rfer_3015 3326008 - 3325415 - | chorismate lyase TERM 3186 3325584 - 3325540 - G 83 -15.7 -3.01712 | CGCCGCGCGTGAAGA CCGAGCGCCGCGC-GGGCAGC ACGCG GCTGGCCAGCGCTGCGC-CGG TAGCGCCCAGCCAGG TERM 3187 3325963 - 3325908 - G 76 -9.4 -4.13945 | gap 1, opp_overlap 3325908 ACCTGCACGCTAAAA CGCTGGCCCGCAGCCGCCAGC-CGCGC GCT GAGCGAGCCGGTCGCACCGACCCAGCG TTTGCGGTTGCCGCG Rfer_3016 3326916 - 3326005 - | putative transmembrane protein TERM 3188 3326080 - 3326049 - G 73 -4.3 -4.62069 | TGCCCAGCGTAAAAA GCACGGCGGCG-AGC AATT GCAGCGC-GCCGGGC CAGGCCTGGTCCCAC TERM 3189 3326967 - 3326953 - R 79 -12.8 -2.9732 | overlap 3326950 CCCCAAGGGAAATTA GCCCCC TCG GGGGGC AGCGCCGCCCAAAGG Rfer_3017 3327789 - 3327007 - | short chain dehydrogenase TERM 3190 3327827 - 3327816 - H 77 -4.4 -4.92757 | opp_overlap 3327816 CCATCAATAACAAAA GAAC GATC GTTC TATTTTGCAAAATCA TERM 3191 3328105 - 3328088 - g 100 -14.1 -4.56597 | GTGGTGCTGGAAAAA GGCGCCG AGCC CGGCGCC CACATCCTCTCGGGC TERM 3192 3329431 - 3329459 + G 71 -8 -4.04319 | gap 1 GGCCAAGTTTGCCGG CCCCGAGGCGCGC TACT GCCCGGC-CGGGG TTTATGAGTTTGTCA Rfer_3018 3327899 - 3329617 + | electron-transferring-flavoprotein dehydrogenase TERM 3193 3330782 - 3330755 - g 84 -10.5 -4.18018 | gap 1, opp_overlap 3330750 3330758 3330759 GTGGGCCATGCAAAA GGTGCGCCGCGC GGGTG GCGC-GCGCGCC GGTGGTTTTCCGGGT Rfer_3019 3329895 - 3331106 + | glycine cleavage system T protein Rfer_3020 3331146 - 3331520 + | glycine cleavage system H protein TERM 3194 3331721 - 3331755 + G 80 -12 -3.76402 | overlap 3331722 GCCGACGAAGCCGTC ATGCTGCGCGCTGTGG CTG CCACGTCGCGCGGCGC TTTGATCGATGCCAT TERM 3195 3331722 - 3331754 + G 81 -15.5 -2.8552 | overlap 3331721 CCGACGAAGCCGTCA TGCTGCGCGCTGTGG CTG CCACGTCGCGCGGCG CTTTGATCGATGCCA TERM 3196 3331990 - 3331951 - g 100 -18.6 -4.11371 | CAACATCCTTGAAAA CCCGGCCTGGTACACCGC CTAC ACGCCGTACCAGGCCGAG ATCAGCCAGGGCCGC Rfer_3021 3331610 - 3334513 + | glycine dehydrogenase TERM 3197 3334597 - 3334568 - T 93 -11.5 -4.44667 | CTCGGCAACAACAAA GTCCCATGGAG ACGCCCTG CCCCATGGGAC GGATGCACACAATGA Rfer_3022 3336731 - 3334617 - | putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane TERM 3198 3335832 - 3335847 + g 70 -3.2 -4.62069 | GGCGATCACGATGGT GTTGGC CGGT GTCAGC TTTTTAAGATGCGCC TERM 3199 3336164 - 3336174 + g 79 -8.2 -4.56597 | TGTCGGTATAGGCCA CGGC GCA GCCG TTTTTCAAGCCCCAC Rfer_3023 3338804 - 3337191 - | methyl-accepting chemotaxis sensory transducer TERM 3200 3338652 - 3338603 - G 75 -8.5 -4.28361 | gap 1, opp_overlap 3338592 3338591 3338645 GGAACGCCAGCAAAA CCTGCAGGCGGTTCTGTACGAT TTTGTCG ATCG-ACTGGTCCGCCAGCAGG GCCGGTTGCATGGCG Rfer_3024 3339918 - 3338911 - | dihydrouridine synthase, DuS Rfer_3025 3340464 - 3339925 - | cyclic nucleotide-binding domain-containing protein Rfer_3026 3342011 - 3340683 - | hypothetical protein TERM 3201 3342554 - 3342593 + G 80 -9.8 -4.07687 | overlap 3342536 3342548 3342547 3342555 GCTGACCGGCACGGC CCGCTGGCGCGTGATTGT GAAC GCCCTCACGCGCCTGCGC TTTTGCACGCCGGCT TERM 3202 3342555 - 3342592 + G 76 -13.3 -3.04398 | overlap 3342536 3342548 3342547 3342554 CTGACCGGCACGGCC CGCTGGCGCGTGATTGT GAAC GCCCTCACGCGCCTGCG CTTTTGCACGCCGGC TERM 3203 3342631 - 3342658 + G 86 -14 -3.51137 | overlap 3342652 TGGAATTTCGCACCA CCGGCGGGCTCG ACGC CGCGCCGGCCGG TTATCTGCCGTGGTT apaH 3342036 - 3342884 + | diadenosine tetraphosphatase Rfer_3028 3344426 - 3342906 - | DEAD/DEAH box helicase-like TERM 3204 3343060 - 3343050 - G 75 -2.4 -5.00616 | overlap 3343052 GGGCTTGTCAAAAAA CGGG TCG CGCG GCGCCGACAGCGGTC TERM 3205 3343357 - 3343339 - G 74 -6.6 -4.36914 | overlap 3343341 3343343 CTCTTGGCCACAAAA CTGACGGC CAG GCCAGCAG CGCCGGCGCGCCCGG TERM 3206 3343649 - 3343635 - G 71 -5.6 -4.40003 | opp_overlap 3343643 GTTGACAAACACAAA GGCCTG CTT CATGCC GCGTGATTTCAGTAT TERM 3207 3343734 - 3343711 - G 89 -10.4 -4.59853 | gap 1, overlap 3343732 TCAACGCTGTAAAAA TGCTGC-TCCA CGG TGGAAGCAGCA GCGTTGGAACGTGCG TERM 3208 3344073 - 3344054 - G 73 -5 -4.61231 | gap 1, opp_overlap 3344057, overlap 3344057 CCATACCGCCAAAAA CAA-CCGCG CTA CGCAGATTG GTATGGACGGCATAG TERM 3209 3344069 - 3344057 - G 74 -6.9 -4.41633 | opp_overlap 3344057, overlap 3344054 TACCGCCAAAAACAA CCGCG CTA CGCAG ATTGGTATGGACGGC Rfer_3029 3344585 - 3344791 + | hypothetical protein TERM 3210 3344810 - 3344828 + F 73 -10.2 -3.42241 | opp_overlap 3344801 TCAAATTGGCCTCCA GCCCCCTG AAA CAGGGTGC TTATAGCTATATATT TERM 3211 3345252 - 3345240 - g 70 -3.3 -4.63218 | TGCCGCCCAAGAAAA TGGCC GAG GGACA GGAGGCCGAAGACCC Rfer_3030 3344867 - 3345715 + | chromosome segregation and condensation protein ScpA TERM 3212 3346094 - 3346062 - g 78 -6.9 -4.63218 | overlap 3346063 TTTTTCTGAAGAAAA CGGCCGCCTGCAC CTCACCC GTGAAGGTGGCCA CAGCGCGCGGCGCAT Rfer_3031 3345724 - 3347334 + | L-aspartate oxidase Rfer_3032 3347370 - 3347777 + | aspartate alpha-decarboxylase TERM 3213 3348098 - 3348057 - g 100 -18.7 -3.727 | gap 1, opp_overlap 3348057 GTTATCACATCGAAA GCGTGGCGCGTGGCCTGCGC CGC GCGCAAGCCACG-GCCTGGC TGATTGGCGACCTGC TERM 3214 3348057 - 3348098 + G 79 -16.5 -2.71364 | gap 1, opp_overlap 3348057 GTTATCACATCGAAA GCGTGGCGCGTGGCCTGCGC CGC GCGCAAGCCACG-GCCTGGC TGATTGGCGACCTGC TERM 3215 3348216 - 3348232 + G 76 -5.8 -4.72272 | gap 1 AGGGCGGGGGCTGGA CCGC-CG ATAC CGTGCGG TTTTTGGTGGAACGC Rfer_3033 3347774 - 3348658 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 3216 3349019 - 3349029 + G 83 -2.4 -5.252 | TTCTGGAAGGCCACT TCCG ACC CGGC TTTTTTGTCGGCGTG Rfer_3034 3348670 - 3349518 + | pantoate--beta-alanine ligase Rfer_3035 3351988 - 3349544 - | UvrD/REP helicase TERM 3217 3350202 - 3350189 - G 100 -9.5 -4.85599 | opp_overlap 3350167 3350166 3350190, overlap 3350190 CGCATGGGACAAAAA CGCCG CCAG CGGCG ACTGGGTTTCGCCGG TERM 3218 3350545 - 3350528 - G 82 -12.7 -3.61715 | opp_overlap 3350528 GATGCCGGCCAAGAA GGCGCCA ATGT TGGCGCC TGCCTTGCCGCCCAG TERM 3219 3351695 - 3351659 - G 76 -10.1 -3.83409 | GCACAGACCATGAAA GGTGCCAATCCACATGC CAC GCACGTTGACCGGCAAC ATGCTGGAGAGGCGC Rfer_3036 3352034 - 3352705 + | hypothetical protein TERM 3220 3352761 - 3352737 - f 75 -12.2 -2.87274 | gap 1, opp_overlap 3352737, overlap 3352734 CCGTAGAATCAAGCA CCGGGCC-CAA GCAA TTGCGGCCCGG TTTTTTGTTTCTGCG TERM 3221 3352737 - 3352761 + F 100 -12.2 -5.72622 | gap 1, opp_overlap 3352737 3352734 CCGTAGAATCAAGCA CCGGGCC-CAA GCAA TTGCGGCCCGG TTTTTTGTTTCTGCG Rfer_3037 3352880 - 3353857 + | guanosine 5'-monophosphate oxidoreductase TERM 3222 3354409 - 3354426 + G 73 -9.8 -3.57144 | TTGGCCATCATGGTC GGCGGC AAGCCA GCCGCC TTTAGCCGTGCCGAG Rfer_3038 3354004 - 3354891 + | 2-hydroxy-3-oxopropionate reductase TERM 3223 3355100 - 3355121 + F 100 -3.7 -5.86061 | opp_overlap 3355089 3355100 TCCATATAAATCAAT GACTTACAA GAAA TTGCGAGTC TTTTTTTTCGTCCAA TERM 3224 3355298 - 3355286 - g 76 -5.5 -4.62336 | ATCGTACGGCAAAAA GGCTA CCC CAGCC GAACAAAAACTTTTG Rfer_3039 3355229 - 3356248 + | phage integrase TERM 3225 3356286 - 3356338 + F 88 -11.2 -4.07568 | TTGCTCGGCTTTAGT TGGCCCCCCACGCCGG-CGCGGCTGC AAC GCAGCCGCAACTGGCGT-GGGCACAA TTTTGGGAGCAACCC TERM 3226 3357329 - 3357315 - g 78 -2.8 -5.01732 | opp_overlap 3357315 AAGCGCCGCAAAAAA GCTG AACCTCG CAGC CTTTCAGAACGCGGT TERM 3227 3362257 - 3362245 - g 73 -4.7 -4.72272 | overlap 3362246 GGGTGCTATGAAAAA GGCGG CGC CCGCA TCAACCAACCGGAAG Rfer_3040 3357208 - 3363876 + | DNA helicase related protein TERM 3228 3364949 - 3364914 - g 70 -3.4 -4.71426 | gap 1, overlap 3364916 3364948 TCGCGACCAACAAAA CCTTCTTCATTGATTCC GTT GAGATCAA-GAAGAACG CTGCTGCAACGCAAG TERM 3229 3366304 - 3366322 + G 79 -8.8 -4.22883 | overlap 3366294 3366305 ACTCGGCGGTTCCGT CGATCCGC TTT GCGGATCA TTGTTTTCGCTCATC TERM 3230 3366305 - 3366321 + G 74 -12.3 -3.13007 | overlap 3366294 3366304 CTCGGCGGTTCCGTC GATCCGC TTT GCGGATC ATTGTTTTCGCTCAT Rfer_3041 3363902 - 3366988 + | ABC transporter Rfer_3042 3369646 - 3367004 - | putative GTP-binding protein Rfer_3043 3370785 - 3369643 - | metallophosphoesterase TERM 3231 3370630 - 3370617 - G 71 -8.1 -4.07568 | TTTGTGCGTCGAAAA CGTCG CCAG CGACG AGGACGGCATCGACC Rfer_3045 3371952 - 3371482 - | hypothetical protein Rfer_3046 3372013 - 3373062 + | transcriptional factor TERM 3232 3373151 - 3373188 + F 77 -4.1 -5.01732 | opp_overlap 3373158 CGACCATGAGCACCT TCAAGGAGATGCCTCAT GCCA ATGAAACCTCCCCTTGA TTTTTTCGACAACTT Rfer_3047 3373233 - 3373943 + | hypothetical protein Rfer_3048 3374044 - 3374316 + | hypothetical protein TERM 3233 3374482 - 3374453 - g 76 -12.9 -3.32997 | opp_overlap 3374478, overlap 3374478 GTTGGACAAATCCAA CCCAGCTCATCGG CTGG CCGATCAACTGGG CCCCGGCTTTCCGTT Rfer_3049 3374313 - 3375191 + | hypothetical protein Rfer_3050 3375336 - 3376106 + | hypothetical protein Rfer_3051 3376111 - 3376779 + | hypothetical protein Rfer_3052 3376865 - 3377566 + | twin-arginine translocation pathway signal Rfer_3053 3377550 - 3377909 + | hypothetical protein Rfer_3054 3379143 - 3378196 - | hypothetical protein Rfer_3055 3379560 - 3379150 - | hypothetical protein Rfer_3056 3380051 - 3379650 - | hypothetical protein TERM 3234 3380108 - 3380144 + r 70 -9.3 -3.71998 | opp_overlap 3380111 TGGCAGGATGGCAAC CCAGCTGGGACCTGG GTGCATG CCAGCGCCCAGCCGG TTCTGTTAATACGTA TERM 3235 3380568 - 3380580 + r 75 -6.2 -4.53705 | overlap 3380579 CCCCGGATTGCCGGC CGGC AAAGC GCCG TTTTGTATAAACGTT TERM 3236 3380579 - 3380593 + r 71 -4.3 -4.56597 | overlap 3380568 CGGCCGGCAAAGCGC CGTTT TGTAT AAACG TTTTTACACGCCAGC TERM 3237 3380660 - 3380681 + r 71 -7.3 -3.93136 | overlap 3380661 3380662 TGGCGGAGCGCAGAT TCTGTCCAT ACGT ATGGACAGC TTTGTCCATACGTAT TERM 3238 3380662 - 3380701 + r 100 -25.4 -4.16943 | overlap 3380661 3380660 GCGGAGCGCAGATTC TGTCCATACGTATGGACA GCTT TGTCCATACGTATGGACA TTTTGCAATATGAAA TERM 3239 3380992 - 3381014 + r 95 -14.2 -3.1855 | CGGGCAGGGCGCCAG GGTGGTTGCA AAC TGCGACCACC TTAACTCTTACGGCC Rfer_3057 3381590 - 3381015 - | hypothetical protein TERM 3240 3381132 - 3381101 - G 70 -10.2 -3.53224 | TATTTTCGCGGCAAA GCACGATGAACG ATCGCTCG CGGTCATCGTGC CAACCGAGGAATGTA Rfer_3058 3382215 - 3381844 - | hypothetical protein Rfer_3059 3383797 - 3382274 - | transposase IS66 TERM 3241 3382640 - 3382666 + g 73 -5.1 -4.63479 | GCGGTTCAGGATCAT CCACTGGTGCA AGGCA TCCAGCAGTGG TTTTGATTTCTCCTG TERM 3242 3383840 - 3383828 - R 82 -5.5 -5.06414 | opp_overlap 3383828 TTTGGTGAATAAAAA GCACC ATT AGTGC TTATCCGTATTGACT Rfer_3060 3384214 - 3383879 - | IS66 Orf2 like TERM 3243 3384158 - 3384125 - G 95 -16.1 -3.99678 | ATGGGCAGAACCAAA CACCGACACAACCTT GGCC AAGGCGGTGTCGGTG CCAGCTCGCATGTCC Rfer_3061 3384627 - 3384223 - | transposase IS3/IS911 TERM 3244 3384786 - 3384807 + r 78 -2.2 -5.28778 | gap 1 GAAGGGCAAGTGCTG GCGGC-CAC CTCGA GTGAGCAGC TTTTTTGTAAGTGAT TERM 3245 3385237 - 3385250 + r 75 -3.7 -4.90013 | GGGTGAACTTTTGGG GCCTG CTCG CTGGC TTTTTCGTTGCATTC Rfer_3062 3385767 - 3385294 - | hypothetical protein Rfer_3063 3387357 - 3386050 - | hypothetical protein TERM 3246 3386085 - 3386114 + g 71 -5.5 -4.32436 | CAATCGCAGCATCAG CCGCCGCCTCAGC AGCC GCTTGGCCCGCGG TTTTGATGCTGGTGT TERM 3247 3387918 - 3387939 + r 80 -4.4 -5.08824 | opp_overlap 3387921, overlap 3387921 GCTCACTACGCACCC AAAGCCTC ATCATC GAGGCTTC TTTTTTGCCTGCGCC TERM 3248 3387921 - 3387936 + r 75 -6.1 -4.64763 | opp_overlap 3387921, overlap 3387918 CACTACGCACCCAAA GCCTC ATCATC GAGGC TTCTTTTTTGCCTGC Rfer_3064 3388208 - 3387927 - | hypothetical protein TERM 3249 3388485 - 3388437 - R 95 -14.4 -3.57263 | opp_overlap 3388447, overlap 3388423 AGGTTGAGCCGCAAA GCGCAGCGCACCACAAGGCGCC CAGCC AGCGCCAAGCGGTCCGTTGCGC CGCCCTGGCTGCCCG Rfer_3065 3389015 - 3388770 - | hypothetical protein Rfer_3066 3389363 - 3389704 + | XRE family transcriptional regulator TERM 3250 3389725 - 3389752 + T 91 -12.2 -4.09685 | overlap 3389726 GGGTGAACCTCGCGT TGAACCTTCATA AATT TATGAAGGTTCG TTTTAAGGCGTGCGG TERM 3251 3389726 - 3389751 + T 84 -13.5 -3.05597 | overlap 3389725 GGTGAACCTCGCGTT GAACCTTCATA AATT TATGAAGGTTC GTTTTAAGGCGTGCG Rfer_3067 3390115 - 3389873 - | hypothetical protein TERM 3252 3389902 - 3389930 + g 81 -15.9 -2.87132 | overlap 3389926 CGGGCTCCATCGGTG GCGCCTGCCCGCC CTG GGCAGCCAGGCGC TCTCTGGCCAGCGCC TERM 3253 3390282 - 3390272 - R 91 -4 -5.55664 | CCATTACTAAAAAAA CAAT GGT ATTG ATCCCCGGTTTCCGT TERM 3254 3391262 - 3391250 - R 75 -4.1 -4.84017 | AAGGCGGGAGAAAAA GCTCA ACT TGAAC ACAACACGCGATCGG Rfer_3068 3391638 - 3391399 - | hypothetical protein TERM 3255 3391678 - 3391641 - H 80 -9.1 -4.21194 | gap 1, opp_overlap 3391671 TTTCACGATGCAAAA CCCCGCGCCTG-CGCA GCCCAAT TGCGCCACGCCCGGGG TGAACTTCGCGCTTT TERM 3256 3391782 - 3391821 + H 80 -12 -3.36581 | gap 1 GAGCCAGCATGCCAA GCCCCTCGCCTTGGGCCTG GCG CAGCCCCTTG-CGGGGGGC TTACTTCGAGCTTTG TERM 3257 3392490 - 3392505 + H 76 -10.4 -3.63627 | CAGCTTGCTCCTACA GCCCCT TGCG AGGGGC TTTGGGCTGTGCCGC Rfer_3069 3393070 - 3393936 + | hypothetical protein TERM 3258 3394257 - 3394244 - f 70 -3.1 -4.81249 | gap 1, overlap 3394246 3394254 3394255 GTTCAAACTCAAAAA GAGCCA AAA TGGC-C GCAGGGATTCCTACG Rfer_3070 3394443 - 3396623 + | sigma 28 TERM 3259 3396645 - 3396631 - g 76 -5.6 -4.5954 | overlap 3396635 3396640 GGAGATGACACAAAA GACACG CAA CGCGCC TCCGCGAGCCAATGC TERM 3260 3397354 - 3397333 - g 71 -6.5 -4.15044 | gap 1, overlap 3397334 CCCCGTCGCAAGAAA GCCGACACCC GAT GGG-GTCGTC GAAGTCGAATGCCAT Rfer_3071 3396620 - 3398128 + | hypothetical protein TERM 3261 3398580 - 3398599 + G 70 -10 -3.48276 | opp_overlap 3398582 CGTGCAGTCGGGCAA GACCGGGA ACTA TTCCGGTC TTGTGTGCAAGGCCG Rfer_3072 3398143 - 3401043 + | endonuclease Rfer_3073 3401027 - 3402031 + | hypothetical protein TERM 3262 3403417 - 3403395 - g 71 -7 -4.21812 | TGGCACGCAAAAGAA TTTCGACCGT TTC ATGGCCGAAA TCACCTCGTCCAACG TERM 3263 3403750 - 3403732 - g 71 -7.4 -4.14392 | TCGGAATGGGCAAAA CGGCCT GAGTGCA AGGCCG CAGTGTTGGAGTCGC Rfer_3074 3402028 - 3403812 + | hypothetical protein Rfer_3075 3403830 - 3404288 + | DNA mismatch endonuclease vsr Rfer_3076 3404376 - 3405059 + | hypothetical protein Rfer_3077 3406793 - 3405240 - | DNA-cytosine methyltransferase TERM 3264 3406577 - 3406551 - G 70 -3.7 -4.58395 | gap 2, overlap 3406552 3406553 CGGATGCGCGAAAAA CTGCTCGCGGGTA ATG TTCCCGC--GCAG ATACTCGTAATAGCA TERM 3265 3407112 - 3407136 + H 100 -14.3 -5.00616 | opp_overlap 3407112 AGGGGGAGAGAAAAA GAAGGGCGCCG GGG TGGCGCTCTTC TTTTTTGGGAAGGGA TERM 3266 3407136 - 3407112 - H 100 -11.4 -4.9725 | opp_overlap 3407112 AGGGGGAGAGAAAAA GAAGGGCGCC GGGGT GGCGCTCTTC TTTTTTGGGAAGGGA Rfer_3078 3407569 - 3408648 + | hypothetical protein TERM 3267 3408815 - 3408787 - f 76 -8.9 -4.05446 | opp_overlap 3408772 CTTGCCAATGAGAAA TTGGCGAAATTTG GTA CAAATATCGCCTA AACAATAGTTAAACA TERM 3268 3412093 - 3412051 - g 100 -22.8 -4.07568 | opp_overlap 3412079, overlap 3412052 3412069 TGCTGGGCGCCAAAA CGCTGGCGGACCGCCAAATG CGC CACCTGGCGGTCCGCCAGAA GGTGGACTGAACCTC TERM 3269 3412092 - 3412052 - g 100 -24.1 -3.04398 | opp_overlap 3412079, overlap 3412051 3412069 GCTGGGCGCCAAAAC GCTGGCGGACCGCCAAATG CGC CACCTGGCGGTCCGCCAGA AGGTGGACTGAACCT Rfer_3079 3410511 - 3412103 + | radical SAM family protein TERM 3270 3412226 - 3412214 - f 74 -4.8 -4.82154 | overlap 3412216 AATCGACATCAAAAA TGGC AAGCG GCCA CCCGAGCCACACGCT Rfer_3080 3412993 - 3413997 + | sodium/calcium exchanger membrane protein Rfer_3081 3415542 - 3414292 - | hypothetical protein TERM 3271 3414610 - 3414597 - G 71 -8.1 -4.08216 | CCATGCTCCTCAAAA GTGGC TCAA GCCAC CACTGCTGCTGGCCA Rfer_3082 3416660 - 3416055 - | two component LuxR family transcriptional regulator Rfer_3083 3418278 - 3416653 - | periplasmic sensor signal transduction histidine kinase TERM 3272 3419341 - 3419324 - R 71 -6.2 -4.3255 | opp_overlap 3419324 GTGCCAAGTAACAAA GGCGGC TGTTGC GCCACC CTCTTACTTGCGACC Rfer_3084 3421842 - 3419359 - | arsenate reductase (azurin) Rfer_3085 3422380 - 3421853 - | twin-arginine translocation pathway signal Rfer_3086 3422553 - 3423416 + | phosphonate-binding periplasmic protein TERM 3273 3423692 - 3423710 + G 72 -2.2 -4.81083 | ACTCGGCTGGCCGTG CTCGACAC CGA GGGGCGGG TTTTTGCTGCTTCGG Rfer_3087 3423416 - 3424861 + | periplasmic sensor signal transduction histidine kinase Rfer_3088 3424858 - 3426168 + | two component, sigma54 specific, Fis family transcriptional regulator Rfer_3089 3426702 - 3426193 - | molybdopterin-guanine dinucleotide biosynthesis protein B Rfer_3090 3428336 - 3426699 - | 4Fe-4S ferredoxin, iron-sulfur binding Rfer_3091 3429043 - 3428333 - | hypothetical protein TERM 3274 3428509 - 3428463 - G 72 -2.9 -4.83169 | gap 2, overlap 3428451 3428464 3428465 AGTGCGGCATAAAAA GGGGTTGCCGCCGCGTCACACAG TTG CC-TGCAATGCGCCGGCA-CCCA AGTCAACAAATGTTC TERM 3275 3428763 - 3428777 + g 71 -7.1 -4.18018 | opp_overlap 3428743 ACACTCTCGTAAGGC GCAGG TAACC CCTGC TTTTGCATGACGCCA TERM 3276 3429064 - 3429079 + r 70 -3.2 -4.77986 | GTGTCACCGAGCGGC GCCG TAAAAGGT CGGC TTTTTGGGTGTTTGA Rfer_3092 3429396 - 3429052 - | hypothetical protein TERM 3277 3429085 - 3429111 + g 71 -6.6 -4.18018 | AAAGGTCGGCTTTTT GGGTGTTTGATG GCA TGTCAGACACTC TTTTCGATCGACGGG Rfer_3093 3430085 - 3429393 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3278 3429652 - 3429662 + g 89 -6.8 -5.05782 | AACGTGCACTTCTCT GCCA CAT TGGC TTTTTTGCGATGGGT Rfer_3094 3432677 - 3430101 - | molybdopterin oxidoreductase TERM 3279 3430577 - 3430593 + g 78 -3 -5.12068 | overlap 3430566 TGTACTGCGCCAGAT CAATCT TGCTC AGGTTG TTTTTCTTCGCTATG Rfer_3095 3433060 - 3433914 + | phosphonate-binding periplasmic protein Rfer_3096 3433914 - 3435386 + | periplasmic sensor signal transduction histidine kinase TERM 3280 3436421 - 3436410 - g 72 -2.2 -4.74103 | TCGGGAACTCAAAAA CACT CTGG AGCG CGCCAGCTTGATGAG Rfer_3097 3435400 - 3436683 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 3281 3436746 - 3436762 + T 74 -4.4 -4.81083 | TTGACGCTTGTTGCC TGAGGG CTGGA CCCTTA TTTTTCCTGATTAGA TERM 3282 3437726 - 3437750 + T 91 -3.6 -5.46698 | gap 1, opp_overlap 3437726, overlap 3437728 CGTCAGACATAGAGA GCCTGCT-ACA TAAT TGTTAGCAGTC TTTTTTGCTTTTGAC Rfer_3099 3438119 - 3437835 - | hypothetical protein Rfer_3100 3438311 - 3439270 + | RpiR family transcriptional regulator Rfer_3101 3439267 - 3440253 + | peptidase T2, asparaginase 2 TERM 3283 3440789 - 3440763 - g 78 -7.2 -4.68593 | overlap 3440764 3440765 TGCACCAGGGAAAAA GCGCCTCGGC AGCAAAG GCCGAGGCAT TGCGCATGCTGGAGT TERM 3284 3441040 - 3441065 + G 82 -9.7 -4.33274 | gap 1 TACGCACGACATGGG CGTGGT-GGCCG AAG TGGCCGACCGCG TTTTGGTGATGTACC TERM 3285 3441949 - 3441965 + G 70 -12.3 -2.89797 | opp_overlap 3441930, overlap 3441945 3441944 3441951 GGTGGTCGAGCGCAT CAGCCAC CGC GTGGCTG TGATGTTTCTGGGCC Rfer_3102 3440291 - 3442222 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 3286 3442475 - 3442491 + G 72 -2.2 -4.81249 | CACAGCCGTCACCAA GTCCTT TTACC AGGGGC TTTTTGAATTTGACA Rfer_3103 3442293 - 3443852 + | extracellular solute-binding protein TERM 3287 3443975 - 3444006 + G 80 -3.6 -5.1356 | opp_overlap 3443961, overlap 3443977 GGCTGCTGGGCCTAA CCCCAACGCTGC TGATTGTT GCAGTGCTGGTG TTTTTGTTCGTGCAC Rfer_3104 3443938 - 3444858 + | binding-protein-dependent transport systems inner membrane component Rfer_3105 3444866 - 3445789 + | binding-protein-dependent transport systems inner membrane component Rfer_3106 3445802 - 3446896 + | peptidase S58, DmpA TERM 3288 3447581 - 3447635 + G 79 -8.8 -4.25104 | gap 4, opp_overlap 3447572 3447574 AGACGACAGCGCTGG CCGACCT-GT-TCTG-CCAGTGGCC-CA CCC TGCGGCGGCTGGACGGAGACGAGGTCGG TTTTGATGCCCCCAC Rfer_3107 3446893 - 3447711 + | peptidase M55, D-aminopeptidase Rfer_3108 3447747 - 3448526 + | aspartate racemase TERM 3289 3449188 - 3449222 + G 78 -15.6 -2.62184 | TTTGCTTGGTCTGCT CGGTCTGCGCTGGGGC CAA GCCCAGGCGCAGGGCG TCATGTCCGCCCCGG Rfer_3109 3449108 - 3449377 + | hypothetical protein Rfer_3110 3449445 - 3449807 + | hypothetical protein Rfer_3111 3450369 - 3449863 - | hypothetical protein Rfer_3112 3451226 - 3450498 - | putative glutathione S-transferase P subunit Rfer_3113 3451962 - 3451333 - | lysine exporter protein LysE/YggA TERM 3290 3452160 - 3452211 + r 100 -16.7 -3.53091 | opp_overlap 3452165, overlap 3452164 3452165 CATGCGCCGCTTGGT CAAAACGCGAGGAGGCAGATGAG ACAAAA CTCATCTGCCTTCTCGCGGTTCA TTTGACGGCCCGACT TERM 3291 3452164 - 3452207 + r 100 -21.9 -3.51232 | opp_overlap 3452165, overlap 3452160 3452165 CGCCGCTTGGTCAAA ACGCGAGGAGGCAGATGAG ACAAAA CTCATCTGCCTTCTCGCGG TTCATTTGACGGCCC TERM 3292 3452206 - 3452165 - R 100 -23.2 -4.07568 | opp_overlap 3452164 3452160 3452165 GCCGCTTGGTCAAAA CGCGAGGAGGCAGATGAG ACAAAA CTCATCTGCCTTCTCGCG GTTCATTTGACGGCC TERM 3293 3452165 - 3452206 + r 100 -25.4 -2.70525 | opp_overlap 3452165, overlap 3452164 3452160 GCCGCTTGGTCAAAA CGCGAGGAGGCAGATGAG ACAAAA CTCATCTGCCTTCTCGCG GTTCATTTGACGGCC Rfer_3114 3453162 - 3452278 - | binding-protein-dependent transport systems inner membrane component TERM 3294 3453063 - 3453048 - G 81 -6.1 -4.86385 | opp_overlap 3453059 AGCGCCAAAAATAAA CAGCG GATTTG CGCTG GCGAGCCGCCTTGGC Rfer_3115 3453990 - 3453172 - | ABC transporter related TERM 3295 3453419 - 3453405 - G 81 -5.6 -4.82901 | overlap 3453408 3453413 CGTGTGTGACAAAAA CCACGG AAG CCTTGG CCTGCGACCACAGGC TERM 3296 3453968 - 3453938 - G 95 -11.3 -4.63218 | gap 1 TCCGGGGTAAGAAAA CGGCGACTGACGTT GATT AAC-TCAATCGCCG GGCTGTCGTTGTGAT Rfer_3116 3455014 - 3454004 - | ABC transporter, substrate-binding protein TERM 3297 3455216 - 3455240 + r 72 -11.5 -3.06302 | opp_overlap 3455216 CTGGGCCAATGAAAA GGTCGTACC CATGACA GGTACGACC TTCAATCAAGCTCAT TERM 3298 3455240 - 3455216 - R 100 -12.9 -4.4078 | opp_overlap 3455216 CTGGGCCAATGAAAA GGTCGTACCCA TGA CAGGTACGACC TTCAATCAAGCTCAT Rfer_3117 3456407 - 3455325 - | porin Rfer_3118 3457741 - 3456731 - | ABC transporter, substrate-binding protein Rfer_3119 3459769 - 3458105 - | methyl-accepting chemotaxis sensory transducer TERM 3299 3459572 - 3459590 + g 71 -8.9 -3.82191 | GCGAATCGCCAGGTC GCTGATG CTGCC CATCAGC TTATTCTCCAGTTCG Rfer_3120 3460033 - 3460752 + | two component transcriptional regulator TERM 3300 3460965 - 3460988 + G 100 -11 -5.26316 | opp_overlap 3460946 CCGCACTGGAGCTTT TCCAGTCGGA GGAG TCCGACCGGA TTTTTTATCGCGTGA TERM 3301 3461093 - 3461127 + G 100 -10.6 -5.00884 | CCTTTCTTCTTCGGT GCCACCATGCGCGGTG AAC CGGTGCGCGTGGTCGC TTTTTTCCAGCCGGT TERM 3302 3461609 - 3461620 + G 72 -2.2 -4.73448 | overlap 3461612 CAGCAAACCGGGCGG CTGG TCAA TCAG TTTTTGACTCTGTCT TERM 3303 3462061 - 3462092 + G 82 -14.4 -3.18023 | overlap 3462060 TGGGGCCACCATCCG GTTGGCTGCCCCCG CCCA TGGGGGCAGCGGAC TCTTGATCGTCATCG Rfer_3121 3460745 - 3462118 + | periplasmic sensor signal transduction histidine kinase Rfer_3122 3462558 - 3463103 + | phasin TERM 3304 3463132 - 3463157 + T 100 -15.5 -3.65542 | opp_overlap 3463098 3463095 3463135, overlap 3463136 GCGGGCAGTGCGCAT CAAGCGGCACC TGCG GGTGCCGTTTG TGTTTTCGCCGTCAG TERM 3305 3463136 - 3463153 + T 100 -12.7 -4.45168 | opp_overlap 3463095 3463135, overlap 3463132 GCAGTGCGCATCAAG CGGCACC TGCG GGTGCCG TTTGTGTTTTCGCCG Rfer_3123 3463926 - 3463390 - | cytochrome B561 TERM 3306 3463987 - 3464013 + r 70 -9.3 -3.66908 | TCACTGCTCCTCTCT GCACCACGCCA GCGAA TGGCGAGGGGC TTACTTTTGCGCGAA Rfer_3124 3465009 - 3464014 - | cytochrome-c peroxidase TERM 3307 3465018 - 3465032 + r 80 -5 -4.87665 | overlap 3465019 TTCTCATGTCGGACC TCCAAT TGG ATTGGG TTTTTATAAATAGGC Rfer_3125 3465407 - 3465087 - | hypothetical protein Rfer_3126 3465728 - 3465462 - | hypothetical protein TERM 3308 3465753 - 3465733 - R 81 -3.9 -5.26875 | GGTGCAATCAAAAAA CTCAGCGCA CCA TCCCCTGAG TAAGCGACAAGGCTT Rfer_3127 3466573 - 3465734 - | IclR family transcriptional regulator Rfer_3128 3466725 - 3467486 + | short-chain dehydrogenase/reductase SDR Rfer_3129 3467524 - 3469038 + | ABC transporter related TERM 3309 3469248 - 3469267 + G 72 -13.6 -2.53715 | overlap 3469247 ACCACCGTGATTGGT GTGCTGGC CATT GCCAGCAC CTTCATCATCATCAC TERM 3310 3469681 - 3469669 - g 73 -4.7 -4.64676 | TGATCCTGAACAAAA CCGCC CTG GGCCG CTACACCTTTGCCTT Rfer_3130 3469065 - 3470066 + | inner-membrane translocator Rfer_3131 3470163 - 3471107 + | periplasmic binding protein/LacI transcriptional regulator TERM 3311 3471491 - 3471469 - g 71 -6.2 -4.41616 | ACGGTTCCAAAGAAA TTGCACCCGG CAT CCAAGGGCAA ATCAAATTGGAAACC Rfer_3132 3471174 - 3472304 + | porin TERM 3312 3472388 - 3472417 + F 86 -15.8 -2.78547 | opp_overlap 3472388, overlap 3472385 AGGGGCGGTATGGAA GCTGCCAGGATC CGTGCT GGTCCTGGCAGC TGGTTCATACGGTAA TERM 3313 3472417 - 3472388 - f 91 -14.4 -3.05463 | gap 1, opp_overlap 3472385 3472388 AGGGGCGGTATGGAA GCTGCCAGGATCC GTGCT GG-TCCTGGCAGC TGGTTCATACGGTAA TERM 3314 3472462 - 3472474 + F 77 -4.8 -4.96468 | opp_overlap 3472460 GGTACTGGAAAGATG TGGG TTCAC CCCA TTTTGTTTAACTTTG Rfer_3133 3472500 - 3473354 + | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase Rfer_3134 3473356 - 3474639 + | mandelate racemase/muconate lactonizing enzyme Rfer_3135 3474639 - 3475526 + | amidohydrolase 2 TERM 3315 3476190 - 3476180 - g 78 -2.4 -5.1101 | GCATCACCCAAAAAA TCCC CTT GGGC CACCGCATGACCACC TERM 3316 3476217 - 3476230 + G 74 -5.9 -4.48263 | opp_overlap 3476217, overlap 3476212 CACCTCGGAAGAAAT CGCGC GCAT GTGCG TTTTCCTGTTGTCTG Rfer_3136 3475546 - 3476322 + | short chain dehydrogenase Rfer_3137 3476351 - 3477949 + | methyl-accepting chemotaxis sensory transducer Rfer_3138 3477998 - 3478339 + | hypothetical protein Rfer_3139 3479724 - 3478426 - | 3-oxoacyl-(acyl carrier protein) synthase II Rfer_3140 3479850 - 3480443 + | TetR family transcriptional regulator TERM 3317 3480797 - 3480787 - g 95 -6.8 -5.48825 | CATCACGCAAAAAAA TGGC ATC GCCA TGGCCGTTCAGGCCG Rfer_3141 3480635 - 3481381 + | short chain dehydrogenase Rfer_3142 3481453 - 3482034 + | hypothetical protein Rfer_3143 3482100 - 3482531 + | GCN5-related N-acetyltransferase Rfer_3144 3483129 - 3482566 - | sigma-24 (FecI-like) TERM 3318 3483179 - 3483152 - R 86 -14.1 -2.89564 | opp_overlap 3483151 TCCCCAGGCGATACA GCGCCGCCCCA TCACGC TGTGGCGGCGC ATCTTCAAACACATG TERM 3319 3483207 - 3483228 + r 72 -11.5 -3.08642 | opp_overlap 3483201, overlap 3483222 ATGTCAACAGCATGC GCCTGCAGC ATTC GCCGCAGGC TTGCCTGCATCCTCT Rfer_3145 3483695 - 3483195 - | carboxymuconolactone decarboxylase Rfer_3146 3483797 - 3484279 + | cupin 2 protein TERM 3320 3484346 - 3484310 - f 78 -5.8 -4.8048 | opp_overlap 3484340, overlap 3484312 3484313 TTGCTATATGAAAAA GATGGC-CGCTAGCCCCC CCG GGCGGCCAGCGCGCC-TG AAGCGGAAAATCCAG TERM 3321 3484345 - 3484312 - f 83 -10.9 -4.02302 | gap 1, opp_overlap 3484340, overlap 3484310 3484313 GCTATATGAAAAAGA TGGC-CGCTAGCCCCC CCG GGCGGCCAGCGCGCCT GAAGCGGAAAATCCA TERM 3322 3484344 - 3484313 - f 86 -14.4 -3.00658 | gap 1, opp_overlap 3484340, overlap 3484312 3484310 CTATATGAAAAAGAT GGC-CGCTAGCCCCC CCG GGCGGCCAGCGCGCC TGAAGCGGAAAATCC Rfer_3147 3484491 - 3485111 + | guanylate kinase Rfer_3148 3485141 - 3485344 + | DNA-directed RNA polymerase subunit omega TERM 3323 3485335 - 3485347 + F 80 -4.7 -5.00616 | opp_overlap 3485335 GATGCTGAAAAAAGT CCCGC TCT GAGGG TTTTTTCCAAGGCCA TERM 3324 3485383 - 3485368 - f 100 -10.4 -5.09426 | opp_overlap 3485368 TCCAAGGCCAAAAAA GCACCG TTTG CGGTGC TTTTTTATTGGCGCG TERM 3325 3485368 - 3485383 + F 100 -10.4 -5.4505 | opp_overlap 3485368 TCCAAGGCCAAAAAA GCACCG TTTG CGGTGC TTTTTTATTGGCGCG TERM 3326 3485494 - 3485468 - f 79 -11.4 -3.73534 | opp_overlap 3485481 3485481, overlap 3485469 3485472 CAACTCCAGCAAGAA GCCAGCCGCGGC GGG GCCGCGGCCCGT GGCCGACTTGCCCAG TERM 3327 3485493 - 3485469 - f 83 -14.9 -2.83639 | opp_overlap 3485481 3485481, overlap 3485468 3485472 AACTCCAGCAAGAAG CCAGCCGCGGC GGG GCCGCGGCCCG TGGCCGACTTGCCCA TERM 3328 3485490 - 3485472 - f 90 -17.4 -2.67428 | opp_overlap 3485481 3485481, overlap 3485469 3485468 TCCAGCAAGAAGCCA GCCGCGGC GGG GCCGCGGC CCGTGGCCGACTTGC TERM 3329 3486105 - 3486117 + G 82 -9.1 -4.36914 | CGCTATTTGCGGCCC TGGCG TTA CGCCA TTTTGTCCAAGGCGG TERM 3330 3486992 - 3486940 - g 70 -4.8 -4.56597 | overlap 3486942 GCGCCCGCTCAAAAA TTCG-CCAGCACCTCAAGACGCTGGC CCA GACCGAGTCT-GAGGACCTGGGCGAA AAGATGTTGGCGCAG TERM 3331 3487054 - 3487035 - g 73 -4.9 -4.68424 | overlap 3487036 3487048 GAAGGCATTGAAAAA TTGCCGG ACGACA CCGGCAG CAATCGGTTGCTGTG TERM 3332 3487585 - 3487606 + G 70 -4.3 -4.54821 | opp_overlap 3487581, overlap 3487587 TGGAAGATGAAGCCG CGCAGGACG CCAC TGACTTGCG TTTTGTGATTGCCGT Rfer_3149 3485493 - 3487712 + | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA Rfer_3150 3488290 - 3487727 - | GreA/GreB family elongation factor TERM 3333 3488233 - 3488265 + g 74 -6.2 -4.49556 | gap 1, opp_overlap 3488226, overlap 3488223 3488223 3488234 GCAGTGAAGGCGATG GCGATGGCG-CGTCG TCCT CGTCGGCGTCATCGG TTTCTTTGGTGAAAG Rfer_3151 3488919 - 3488338 - | superoxide dismutase TERM 3334 3488518 - 3488533 + g 70 -4.6 -4.56597 | overlap 3488520 CATGTTGACGATATC GACCGA ACCA TCGGCC TTTTTCACCAGCCAG Rfer_3152 3490388 - 3488970 - | exodeoxyribonuclease VII, large subunit TERM 3335 3489173 - 3489228 + g 72 -11.6 -3.29704 | gap 1, opp_overlap 3489202, overlap 3489205 3489215 3489216 GCTCGTCCTGGCGCT GCAGGCCGCGCTGC-GCCGCCGTGGGC AAA GCCGCCTGCTGCCGCAGCAAGGCTTGC TGTCTTTGCTGCACA TERM 3336 3489636 - 3489678 + g 72 -2.5 -4.7373 | overlap 3489642 3489645 3489648 3489654 GCGCACCAGCAAAAT GACATCGATGCAGGGTGCG GCGGA CTCGCCCTTCTTCTTTGTC TTTTTAGTAAAATCA TERM 3337 3489642 - 3489672 + g 70 -3.1 -4.58297 | overlap 3489636 3489645 3489648 3489654 CAGCAAAATGACATC GATGCAGGGTGCG GCGGA CTCGCCCTTCTTC TTTGTCTTTTTAGTA TERM 3338 3490223 - 3490168 - G 74 -6.6 -4.32491 | overlap 3490169 AGGGAAAAATAACAA TGCCCGCTCGACGCGCGCGAGAAACC CGAC AATTCGCCGCGCACGACGACCGGGTT AAAACGGGAATCGAG TERM 3339 3490339 - 3490325 - G 72 -2.8 -4.81163 | CAAACATGAAGAAAA CGAC CGCTGGC GTCG GGCTGTGACAGGGGA TERM 3340 3490730 - 3490747 + G 73 -9.1 -3.95073 | TCTATCCTGGCCCTG GCGCTCG TCAT TGAGCGC TTTGTCAGTCTCAAG Rfer_3153 3490628 - 3491293 + | MotA/TolQ/ExbB proton channel Rfer_3154 3491290 - 3491718 + | biopolymer transport protein ExbD/TolR TERM 3341 3491872 - 3491911 + F 95 -17.8 -2.62396 | CCCCACCCATACCCC CCCGCCCCTTTCCCGCCC CGCC GGGCGGGAAAGGGGAGCC TCATGTGGCCGCGTC TERM 3342 3492774 - 3492815 + G 95 -12.2 -4.18161 | gap 1, overlap 3492811 GCGTGAACCCTGGCC GCGCGCGGTGGACCTGGTG CTGCA CACC-GGCACACCGCCCGC TTTTGCCGGTTTCTC Rfer_3155 3492187 - 3493254 + | tetraacyldisaccharide 4'-kinase TERM 3343 3493326 - 3493297 - g 77 -11.5 -3.67611 | gap 1, overlap 3493294 GCCACTCGAATACAA CCGCGAGAAG-CAG GAA CTGACTTCCCGCAG CGCGCGGCTGGCCTA Rfer_3156 3493235 - 3493417 + | hypothetical protein TERM 3344 3493993 - 3494007 + G 76 -5.6 -4.58283 | CACATTGGCCTCTAT GCCTAC CGG GTCGGC TTTTTACGCCGCTTC Rfer_3157 3493414 - 3494187 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase adk 3494307 - 3494963 + | adenylate kinase TERM 3345 3494990 - 3495009 + T 91 -7.8 -5.00616 | opp_overlap 3494985 CGGTCAAACAGGGCC TGGCGCCC CTTG GGGTGTCA TTTTTTAGGCCAAGC Rfer_3159 3495906 - 3495100 - | alpha/beta hydrolase TERM 3346 3495190 - 3495202 + g 70 -3.3 -4.72272 | CAGGTAAACCACTTG GGCAT TTG ACGCC TTTTTAATCAGACCC TERM 3347 3495288 - 3495267 - G 83 -4.3 -5.0916 | gap 1 GGCCCAACACAAAAA GCACCGG-GC ACT GCACCTGCGC CATCGCCGCCTCCCC Rfer_3160 3497207 - 3495906 - | O-acetylhomoserine aminocarboxypropyltransferase Rfer_3161 3497299 - 3498393 + | chorismate synthase Rfer_3162 3498757 - 3498449 - | twin-arginine translocation pathway signal TERM 3348 3498986 - 3498965 - R 72 -12.3 -2.77781 | opp_overlap 3498965 3498964 3498968 3498969, overlap 3498962 3498961 3498969 CGGCACCAAAACGCA GAAACCGCC CGCA GGCGGCTTC CTTAATACTGCGCAG TERM 3349 3498982 - 3498969 - R 80 -9.5 -4.06781 | opp_overlap 3498969 3498968 3498965 3498964, overlap 3498962 3498965 3498961 ACCAAAACGCAGAAA CCGCC CGCA GGCGG CTTCCTTAATACTGC Rfer_3163 3500169 - 3499006 - | basic membrane lipoprotein TERM 3350 3500227 - 3500211 - R 84 -2.9 -5.42259 | opp_overlap 3500199, overlap 3500212 TGACGGGTAAAAAAA TCCGATT ATG AACCGGG AAAATCAGGAATCCG Rfer_3164 3501155 - 3500232 - | inner-membrane translocator Rfer_3165 3502207 - 3501152 - | inner-membrane translocator TERM 3351 3501540 - 3501494 - G 81 -8.5 -4.63218 | gap 1, overlap 3501464 CCGGCGCGAAGAAAA CCCGGCATAGCGGGCGGC-GGC CGGG GCCAGCCCCCCAACCTGCTGGG CAAAACCAGCGCGGG TERM 3352 3502079 - 3502067 - G 81 -5.5 -4.82901 | overlap 3502069 GGGCTCCCAGAAAAA TACGC TGA GCGCA CTCACCGGGTCCTTG Rfer_3166 3503726 - 3502200 - | ABC transporter related TERM 3353 3503859 - 3503838 - R 73 -5.1 -4.62783 | gap 1 CATGCACGTCAAAAA GCCACTGACG CGC CG-CAGCAGC CATTTTCCTGGGTGA Rfer_3167 3504937 - 3503888 - | sporulation related Rfer_3168 3505596 - 3504973 - | Crp/FNR family transcriptional regulator Rfer_3169 3506556 - 3505840 - | ABC transporter related Rfer_3170 3507372 - 3506602 - | ABC transporter related Rfer_3171 3508460 - 3507369 - | inner-membrane translocator Rfer_3172 3509405 - 3508476 - | inner-membrane translocator TERM 3354 3508734 - 3508722 - G 70 -3.3 -4.59109 | CAGACCCGGCAAAAA GCCCA TGG TGTGC TGCACCGTGCCGTAG TERM 3355 3509227 - 3509205 - G 70 -9.9 -3.48036 | gap 1 GATCAGCAGAATCAA CCAT-CCCGG CGTG CCGGGCATGG CCTCCTGCATCCAGC TERM 3356 3509581 - 3509568 - R 71 -4.5 -4.67353 | opp_overlap 3509568 3509570, overlap 3509570 GTAGTCACCGAAAAA CCCCT GCTA AGGAG GTCATTGGTATGGGT Rfer_3173 3510387 - 3509725 - | hypothetical protein TERM 3357 3510240 - 3510252 + g 79 -9.1 -4.2461 | opp_overlap 3510237 CTTCCTGAATCACCA CCGCT TCA AGCGG TTTGTTGATGGCGCT Rfer_3174 3511336 - 3510431 - | MotA/TolQ/ExbB proton channel TERM 3358 3511328 - 3511316 - G 93 -7.7 -4.96501 | TTTGAGAAAAATAAA GGATG CGG CATCC CGATCCATGGGCTGG Rfer_3175 3512878 - 3511388 - | thermostable carboxypeptidase 1 TERM 3359 3512388 - 3512365 - G 78 -6.7 -4.58283 | TAACGTCGCCAAAAA TGCGGTCCA TGTCAT TGGAGCGCA TGCCGGGTTCATATT Rfer_3176 3514213 - 3512906 - | recombination factor protein RarA TERM 3360 3513023 - 3512999 - G 71 -8.4 -4.07885 | GACCGGGCGGTAAAA GCCCGGCGGC GCCAT GCCGTCCGGC AGGTAGCGCTCGCCC TERM 3361 3513603 - 3513651 + g 95 -6.6 -5.36441 | opp_overlap 3513604 3513630, overlap 3513605 TCCAGCGTGTTAAGC AGGCG-CCGGGCGTCGCCGTCAGC AAA GCCGACGA-GACGCTCGGATGCTA TTTTTTCTATAGCAG TERM 3362 3513605 - 3513649 + g 93 -11.4 -4.31943 | opp_overlap 3513604 3513630, overlap 3513603 CAGCGTGTTAAGCAG GCG-CCGGGCGTCGCCGTCAGC AAA GCCGACGA-GACGCTCGGATGC TATTTTTTCTATAGC Rfer_3177 3514874 - 3514233 - | outer membrane lipoprotein carrier protein LolA Rfer_3178 3517287 - 3514933 - | cell divisionFtsK/SpoIIIE TERM 3363 3518256 - 3518271 + G 71 -6.1 -4.36914 | overlap 3518252 CCGGTTGCATGGCGG CGCTG GATGCG CAGCG TTTTCTGGAACAGGA Rfer_3179 3517340 - 3518290 + | thioredoxin reductase TERM 3364 3518384 - 3518398 + F 76 -2.8 -5.06414 | TTGGGGATAGCAATC GGGT TACCGCC ACCC TTTTTCTTGGCGAGG TERM 3365 3518440 - 3518464 + F 77 -7.3 -4.24413 | CGAGATCGGAAGTTG TTGTTAAAGCA GTT TGTTTTAACGA TTATTTCTTGATCGA rpmB 3518514 - 3518747 + | 50S ribosomal protein L28 Rfer_3181 3518759 - 3518929 + | ribosomal protein L33 TERM 3366 3518946 - 3518980 + T 100 -18 -3.49938 | opp_overlap 3518955, overlap 3518955 TCAGTCTTTCTGACC CACAAAAAAGCCCGCT CTT GGCGGGCTTTTTTGCG TTCTGGGTTCTTTCA TERM 3367 3518955 - 3518971 + T 100 -11.5 -5.1925 | opp_overlap 3518955, overlap 3518946 CTGACCCACAAAAAA GCCCGCT CTT GGCGGGC TTTTTTGCGTTCTGG TERM 3368 3518971 - 3518955 - T 100 -10.8 -5.28176 | opp_overlap 3518955 3518946 CTGACCCACAAAAAA GCCCGC TCTTG GCGGGC TTTTTTGCGTTCTGG Rfer_3182 3520207 - 3518993 - | fatty acid desaturase TERM 3369 3520027 - 3520016 - G 76 -5.8 -4.6902 | CCAGAATCTGAAAAA GTGG GCGG CCAC CGGGTGCAAATCAAG Rfer_3183 3521665 - 3520376 - | Fmu (Sun) TERM 3370 3521345 - 3521357 + g 84 -5.5 -4.93296 | ATTGATTTTTTCGCA CTGGT CAA GCCAG TTTTTCTCCTGGTCG TERM 3371 3522353 - 3522309 - g 70 -10.5 -3.53091 | overlap 3522310 3522313 ATTTTTGGCGGCAAA CGCAGCGCCCTGAACGCCAGC GAA GCCGACGCCCAGGCCGCCCAG ACCACGCTGGCCGAT TERM 3372 3522349 - 3522313 - g 78 -16.5 -2.64155 | overlap 3522310 3522309 TTGGCGGCAAACGCA GCGCCCTGAACGCCAGC GAA GCCGACGCCCAGGCCGC CCAGACCACGCTGGC Rfer_3184 3521847 - 3523274 + | RND efflux system, outer membrane lipoprotein, NodT TERM 3373 3523725 - 3523711 - g 85 -5.6 -5.06451 | overlap 3523713 GATCAGGTCAAAAAA GGCCAG GTG CTGGTC GAGCTTGACACCGCC Rfer_3185 3523348 - 3524688 + | secretion protein HlyD Rfer_3186 3524685 - 3525443 + | ABC transporter related Rfer_3187 3525443 - 3526645 + | hypothetical protein TERM 3374 3526800 - 3526821 + F 95 -10.1 -4.7373 | opp_overlap 3526801, overlap 3526801 ACCTATAAAAAAAAA AGGGCTGAG TTTC CTCAGCCCC TTTTTCCTGGAATCA TERM 3375 3526801 - 3526820 + F 88 -13.6 -3.43756 | opp_overlap 3526801, overlap 3526800 CCTATAAAAAAAAAA GGGCTGAG TTTC CTCAGCCC CTTTTTCCTGGAATC TERM 3376 3526820 - 3526801 - f 100 -13.6 -6.48081 | opp_overlap 3526801 3526800 CCTATAAAAAAAAAA GGGCTGAG TTTC CTCAGCCC CTTTTTCCTGGAATC TERM 3377 3527379 - 3527348 - f 77 -3.6 -4.99947 | gap 1, opp_overlap 3527376 GGCAATGAAATAAAA GCCCGCTTTCCAGCC GAC AGC-AGAAGTCGGGC ATCACAGGCAACCTA TERM 3378 3527949 - 3527963 + G 79 -9.2 -4.2349 | opp_overlap 3527919 TGACGCCTGGATTCT CGCTGG CCG CCGGCG TTTTGGGTCTGCCAG TERM 3379 3528066 - 3528082 + G 88 -6.6 -4.88388 | GCCGGACATGAACTT TGGAGT GGAAG ACTCCA TTTTTGTCCCGTTCT TERM 3380 3528343 - 3528361 + G 80 -11.6 -3.78351 | CGCTTCAAGGACCGC CCGCCGGG CAT CCCGGCAG TTTACTGAAATTTAT Rfer_3188 3527503 - 3528369 + | lipid A biosynthesis acyltransferase TERM 3381 3528471 - 3528451 - T 75 -6.2 -4.56775 | gap 1, overlap 3528462 ATTGGGTTGCAAAAA GTCGC-CAA TCAG TTGCGCGAC CAACTGGGGCTGTTC Rfer_3189 3529347 - 3528427 - | alpha/beta hydrolase Rfer_3190 3530081 - 3529458 - | GTP-binding protein, HSR1-related TERM 3382 3529893 - 3529907 + g 81 -4.2 -5.00616 | overlap 3529894 3529895 GAACAGGTTGATGTG TTGGGT GCG ACCCGG TTTTTTGGAAGCGAA TERM 3383 3530098 - 3530071 - G 76 -14.2 -3.07816 | gap 1, opp_overlap 3530095, overlap 3530076 GCGGTATGCAGCCAA CCCAATGCCACGG TAG CCGCGGC-TTGGG CCTGCGGGTCGGGCG TERM 3384 3530099 - 3530117 + H 83 -7.4 -4.65895 | overlap 3530095 TAGCCGCGGCTTGGG CCTGCG GGTCGGG CGCAGG TTTTTGGGTGGCCGA TERM 3385 3530640 - 3530626 - g 72 -2.8 -4.8622 | TTTGCCAAGGAAAAA GAACTG GTG CAGTTG GGTGAGCGTATTTAC Rfer_3191 3530236 - 3530895 + | cytochrome c, class I TERM 3386 3530973 - 3530999 + F 100 -15.3 -5.75342 | opp_overlap 3530971 3530969 CCAGTCATCAAGACG GGCAGATCCAT GGCCA ATGGATCTGCC TTTTTTTTCGGCGAC TERM 3387 3531281 - 3531296 + G 70 -10.4 -3.55815 | opp_overlap 3531293, overlap 3531290 AAATCGCCTGGTGGT GCGCTG CAAT CAGCGC TTTGGGCAGATCTTT TERM 3388 3531576 - 3531561 - g 83 -4.6 -5.14163 | ATCGATGAACAAAAA GCCGCG CAGG CACAGC TGCAGTCGGTATTGA TERM 3389 3532076 - 3532054 - g 95 -7 -5.4505 | CCGCCGAACAAAAAA CCGCCGAA GCCTACA TTCAGCGG CTGGCCCACTTTGAT TERM 3390 3533263 - 3533296 + G 91 -5.9 -5.30616 | gap 1, overlap 3533264 3533265 AGGGTCAGCTCGAGT TTCTGCGCGCTCGGGG CTG CAACGAG-GCGCAGGG TTTTTATTTCAGTCG Rfer_3192 3531147 - 3533357 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rfer_3193 3533951 - 3533370 - | hypothetical protein Rfer_3194 3535407 - 3534421 - | hypothetical protein TERM 3391 3534854 - 3534870 + g 74 -3.7 -4.85599 | overlap 3534856 CGGTAAGGGGCGGCC TGCAAGT CCA GCTTGTA TTTTTGTCCAATCAC TERM 3392 3535047 - 3535037 - G 71 -8.2 -4.13343 | overlap 3535027 ACAAAGGTGGCAAAA CCGG CCA CCGG CATGAAATCTTTGCT Rfer_3195 3536233 - 3535439 - | short-chain dehydrogenase/reductase SDR Rfer_3196 3537384 - 3536350 - | ApbE-like lipoprotein TERM 3393 3536654 - 3536642 - G 71 -5.5 -4.3739 | GAGGCCGCGACAAAA CCCTG GGT CAAGG ACACCACACCCAATA TERM 3394 3537097 - 3537115 + g 76 -13.2 -3.07113 | CACCGGTTGCAGACC CGCCATCA GGT TGATGGCG TTCAGTGCGCTCGTC Rfer_3197 3537790 - 3537404 - | cytochrome c, class I TERM 3395 3537711 - 3537724 + g 72 -2.3 -4.82901 | overlap 3537663 GCCGGCGCTGTGGCA GGTGC GGGG GCGTC TTTTTGTCCGCAAGC TERM 3396 3537983 - 3537972 - H 80 -4.4 -5.00616 | GCCGGGGCTAAAAAA CACA TGCC TGTG CAACCTCCGTCCTCC TERM 3397 3538474 - 3538456 - g 79 -9.6 -4.28713 | AAGAGCACGAAGAAA GATGAGAC GCA GTCCCATC GTGGGCCGAACAACG Rfer_3198 3538171 - 3540864 + | FMN-binding TERM 3398 3540970 - 3540940 - g 75 -2.5 -4.89477 | gap 1, opp_overlap 3540940 3540942, overlap 3540935 3540942 CTCCCAACAATAAAA TCGCGA-TCCCCAG GGAT CTGGGTCGTCGCAA TTTTCTCAACAAAAC TERM 3399 3540996 - 3540985 - g 78 -7.2 -4.63486 | opp_overlap 3540993 ATTTTCTCAACAAAA CGGC AATT GCCG GCCTTGCCGGGGCTG Rfer_3199 3540918 - 3542870 + | nitrous-oxide reductase Rfer_3200 3542942 - 3544240 + | periplasmic copper-binding Rfer_3201 3544221 - 3545132 + | ABC transporter related Rfer_3202 3545140 - 3545967 + | putative transmembrane protein Rfer_3203 3545964 - 3546509 + | NosL Rfer_3204 3546520 - 3546792 + | hypothetical protein Rfer_3205 3546792 - 3547151 + | hypothetical protein Rfer_3206 3547197 - 3547508 + | putative lipoprotein involved in nitrous oxide reduction TERM 3400 3547854 - 3547891 + G 88 -2.8 -5.47218 | gap 3, overlap 3547839 3547836 GCGCGCGCCCCGCAA TGGGCGGCG-CA--GCTGA TCT TCAGCAATGGTGACGCCCA TTTTTTTGACTCGCC TERM 3401 3548130 - 3548100 - g 71 -6.6 -4.15044 | overlap 3548115 GCCTTCGCCAACAAA CGGGCAGCCGAGCA ATT CGCACAGCAGCGCG GCGGGAAAGTGCGGG Rfer_3207 3547551 - 3548219 + | hypothetical protein Rfer_3208 3551397 - 3548554 - | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase TERM 3402 3549234 - 3549199 - G 73 -9.8 -3.59262 | gap 1, opp_overlap 3549208, overlap 3549200 GGCGATACCGGTAAA GGCATCGCCCACCAACA TGG CGTTGATGG-CGATGCT GCTCGCGCCCATGGC TERM 3403 3549233 - 3549200 - G 73 -13.3 -2.75343 | gap 1, opp_overlap 3549208, overlap 3549199 GCGATACCGGTAAAG GCATCGCCCACCAACA TGG CGTTGATGG-CGATGC TGCTCGCGCCCATGG Rfer_3209 3556385 - 3551394 - | pyruvate flavodoxin/ferredoxin oxidoreductase-like TERM 3404 3551701 - 3551717 + g 76 -10.8 -3.72576 | ATCGGTATCACCCGG GCGCCG CCGAC CGGCGC TTTGCTGGCGGCGGC TERM 3405 3553378 - 3553354 - G 73 -5 -4.58773 | opp_overlap 3553354 3553360, overlap 3553349 3553356 CTCATGAAATCAAAA CGCTGTTGCA GGGTT TGCAACAAGG CCGCATCCTGTTCGC TERM 3406 3556211 - 3556197 - G 78 -2.8 -5.06816 | opp_overlap 3556201 AGGGCCGAAGAAAAA TGGG TGTTTGC CCCA GACATTGATGCCGCC TERM 3407 3556539 - 3556495 - R 76 -12.8 -2.73781 | opp_overlap 3556538, overlap 3556494 3556497 GGAAGCTAAATTAAT GAGACCCCCTGCCCGGCGCC TTGGG AGCACCCGGCAGGAAACCTC GCACGGCGCTTGCCG TERM 3408 3556598 - 3556577 - R 74 -4.4 -4.82901 | TCCGGCCTACAAAAA GGCAAGTG GCTTAA CACTCACC CCAACTGGTCAAACG TERM 3409 3556794 - 3556814 + r 73 -5.3 -4.67353 | overlap 3556786 3556795 AGGGCTATCCGGTCT GGCACTGGA TTG TCCAGCGCG TTTTTACGTGGATGC Rfer_3210 3557747 - 3556818 - | hypothetical protein TERM 3410 3556975 - 3556937 - G 71 -5.9 -4.29738 | gap 2, overlap 3556927 3556922 CGACACCCATCAAAA TGGTGGACATCGGGCCGAC CAT GCCGGCCTG-CG-CCGCCA GACTGGGACCAATGC TERM 3411 3557788 - 3557770 - R 74 -7.4 -4.10925 | opp_overlap 3557771 3557775, overlap 3557773 3557775 ATATATTCTTGAAAA CCACACTG AGC CAGTGCAG CTCAGTTGTTTTTAA TERM 3412 3557775 - 3557793 + r 73 -6 -4.40561 | opp_overlap 3557773 3557770 3557775, overlap 3557771 TTCTTGAAAACCACA CTGAGC CAGTGCA GCTCAG TTGTTTTTAAAAACC Rfer_3211 3559097 - 3557790 - | hypothetical protein Rfer_3212 3560636 - 3559122 - | hypothetical protein TERM 3413 3559262 - 3559278 + g 70 -3.5 -4.69053 | opp_overlap 3559238 3559236 3559262, overlap 3559263 CACCGCGCGACAGCA GCAGCGC ACG GCGCAGG TTTTCTTCCATCATC TERM 3414 3559340 - 3559309 - G 74 -3.6 -4.77165 | gap 1, opp_overlap 3559324, overlap 3559310 GGCCCCAGAATAAAA CCCAGCA-GCAGCGG TGC CGGCTCCATGCCGAG CTTGATGAACACATA TERM 3415 3559763 - 3559777 + g 81 -5.6 -4.77165 | CAAATGGCACTTCAC CCGGCT GCA GGCTGG TTTTCTTCTCGAGCG TERM 3416 3560032 - 3560020 - G 70 -4.8 -4.51097 | overlap 3560012 GCAATCACGATAAAA CCGA TGCCG TCGG TCAGCTCCGGAATGT TERM 3417 3560212 - 3560194 - G 84 -6 -4.90869 | overlap 3560196 ACCATCAATGAAAAA TATTCGGC CGC GCCAAACA TGAAGGCGAGCTCGG TERM 3418 3560332 - 3560283 - G 78 -2.6 -5.02476 | opp_overlap 3560315, overlap 3560284 ACAGCCGGCAAAAAA CGAGCCCAGTCCA-GCCGCCGCCA ATGC CGG-GCCGGCGCGGCCCTGGCGCG CCATCTGGTAGCCGT Rfer_3213 3561124 - 3560633 - | hypothetical protein Rfer_3214 3562979 - 3561192 - | type II secretion system protein E TERM 3419 3562843 - 3562868 + g 88 -14 -3.69663 | overlap 3562842 ACACTCTCGGCCTGG GCGCAGCGCG CGTTGA TGCGCTGCGC TTCTTCGGTGCTAAT Rfer_3215 3563797 - 3562976 - | hypothetical protein TERM 3420 3563371 - 3563399 + g 95 -13.8 -4.07568 | GCATTTCTTGCGCGG CGTCCGCCAGCA CCACC TGCAGGCGGGCG TTTTCAGCCGGCAGC Rfer_3216 3564346 - 3563804 - | hypothetical protein Rfer_3217 3565248 - 3564394 - | hypothetical protein TERM 3421 3565592 - 3565577 - g 74 -5.4 -4.53047 | AGCAAAGATAAGAAA GACCAG ACTA CTGATC GCTGGCTGCGGAATT TERM 3422 3565624 - 3565651 + G 73 -4.8 -4.70583 | GCAGCAGCCCCGCAG TTTGTGCAGCCC GCAT GGGCTTCGAAAA TTTTGTCTTGGTGGA Rfer_3218 3565494 - 3566339 + | UBA/THIF-type NAD/FAD binding protein Rfer_3219 3566557 - 3567450 + | hypothetical protein TERM 3423 3567495 - 3567474 - T 95 -11.6 -4.58395 | opp_overlap 3567474 GCTACCCCCCAAAAA CTGCCTGG TTGAAG CCAGGCAG TTTTTTTTGTTTTTG TERM 3424 3567474 - 3567495 + T 100 -12.3 -6.4275 | opp_overlap 3567474 GCTACCCCCCAAAAA CTGCCTGGT TGAA GCCAGGCAG TTTTTTTTGTTTTTG Rfer_3220 3568308 - 3567583 - | hypothetical protein Rfer_3221 3569282 - 3568431 - | TatD-related deoxyribonuclease TERM 3425 3569218 - 3569238 + g 71 -5.3 -4.42386 | opp_overlap 3569200, overlap 3569220 GCCCGCGCCCGCACT GCCTGGGCT AGA GGCCTAGAC TTTTGTGCATCCAGG Rfer_3222 3569415 - 3570482 + | extracellular solute-binding protein TERM 3426 3571413 - 3571438 + G 88 -6.7 -5.00616 | overlap 3571418 3571418 CTGGCGCGCCAGAGC GTCACGCTGGC CGAT GCCGGCTTGCC TTTTTTCAGCGCCCG Rfer_3223 3570495 - 3571649 + | ABC transporter related TERM 3427 3572453 - 3572464 + G 74 -3.6 -4.77438 | overlap 3572446 3572443 AACTGGGAGCAGGGG GCCG CCTT TGGC TTTTTGCTGCTGGGT Rfer_3224 3571667 - 3572554 + | binding-protein-dependent transport systems inner membrane component TERM 3428 3572589 - 3572613 + GT 83 -2.2 -5.30575 | gap 2, overlap 3572596 GCTTTGGTTGCGCGC CAGCA--CCGTG GTC TACGGACTGCTG TTTTTTGCCTTTTTG Rfer_3226 3574351 - 3573326 - | ornithine cyclodeaminase Rfer_3225 3572551 - 3573423 + | binding-protein-dependent transport systems inner membrane component TERM 3429 3574129 - 3574139 + gT 71 -6.8 -4.17048 | CAGATACGGCGGGCT TGCC CCT GGCA TTGTTTTCAGGCCAG Rfer_3227 3574998 - 3574393 - | transcriptional regulator TERM 3430 3575059 - 3575083 + r 71 -6.4 -4.24294 | gap 1, opp_overlap 3575062 3575064 3575065 CCTACACGTCAAAGC GAACACCCTGC GCGA GC-GGGAGTTC TTTTGAATAATTGAT Rfer_3228 3576559 - 3575045 - | aldehyde dehydrogenase TERM 3431 3575150 - 3575163 + g 100 -9.5 -4.85782 | ATCGGAGCCCGACTC CCGGC CACC GCCGG TTTCTTTTTCGCCGC TERM 3432 3576550 - 3576561 + g 85 -2.2 -5.41746 | GAAGAAGTGCATTTG CCGT GGAC ATGG TTTTTTTACCCGATT Rfer_3229 3576658 - 3577833 + | FAD dependent oxidoreductase Rfer_3230 3579241 - 3578039 - | extracellular ligand-binding receptor Rfer_3231 3580126 - 3579350 - | lipoprotein releasing system, ATP-binding protein Rfer_3232 3581384 - 3580128 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 3433 3581096 - 3581086 - G 76 -6.8 -4.43844 | overlap 3581087 TGAGTAGCTATAAAA GGTG CAG CACC AACCACCTGGGGATG TERM 3434 3581343 - 3581313 - G 74 -3.9 -4.80736 | overlap 3581315 GATGAAAGAAATAAA GC-CGTTGCGCCGGG TCG CGCGGC-CAGCGCGC GTGTAGCGCCAGCCA TERM 3435 3581569 - 3581546 - g 78 -6.6 -4.62471 | overlap 3581548 CCGAACCTTGAAAAA CTGCTGCGCC GCCT GACACCGCAG CCGATGGACAGCGGC Rfer_3233 3581459 - 3582406 + | hypothetical protein TERM 3436 3583021 - 3583047 + G 72 -12.2 -3.05384 | overlap 3583022 3583023 3583025 GTGTTGCTGGCACTG CGCGCCGAGCTG CGC CAGCGTGGCGTG TTCCATGCGGCCACG TERM 3437 3584051 - 3584100 + G 76 -5.7 -4.72272 | gap 2, overlap 3584052 CCGCGCGCGTCAAAC TCGCGTTCCGGCTGGATGCCGAT GCCTGG AACGGCGTTC-GCCGG-GTGCGG TTTTTGGTGGAGGCG Rfer_3234 3582403 - 3584133 + | single-stranded-DNA-specific exonuclease RecJ Rfer_3235 3586637 - 3584118 - | AAA ATPase TERM 3438 3585519 - 3585477 - G 100 -14.8 -4.15044 | opp_overlap 3585482, overlap 3585482 GGCCTCGTCAATAAA CAAAACGCCGCCCAGCGCGG ACT CCACGATGGCCCGCGTCTTG AGCGCCGTCTGGCCA TERM 3439 3585514 - 3585482 - G 100 -11.1 -5.09762 | opp_overlap 3585482, overlap 3585477 CGTCAATAAACAAAA CGCCGCCCAGCGCGG ACT CCACGATGGCCCGCG TCTTGAGCGCCGTCT TERM 3440 3585999 - 3586054 + g 84 -3.1 -5.1861 | overlap 3586001 GTAGAGCCAGCCCAG GTTGCTGCAGGATTCGGCATGCG CTTGTTCTGC CGCAAGCCGGTTCCAGTAGACAC TTTTTTCATAGTCCA TERM 3441 3586813 - 3586829 + H 74 -4.4 -4.7254 | gap 1, overlap 3586812 CTTGGCCCCACCGAG CCGCTAC CCGC GT-GCGG TTTTTGCTGGAGACT Rfer_3236 3586824 - 3587783 + | PHP-like Rfer_3237 3587791 - 3588693 + | hypothetical protein Rfer_3238 3588752 - 3589375 + | Sua5/YciO/YrdC/YwlC TERM 3442 3589773 - 3589794 + G 83 -2.8 -5.252 | opp_overlap 3589774, overlap 3589774 GTTCTATGTGCTCAA AGGCACGG GTGTGA CCGAGCCC TTTTTTATCAAGATG Rfer_3239 3589408 - 3590076 + | peptidase M50 TERM 3443 3590488 - 3590475 - g 72 -2.4 -4.82901 | overlap 3590458 3590457 GGCGGTCGACAAAAA TACC GCCGCA GGTA TTGACCCCGAGTCCG TERM 3444 3590796 - 3590784 - g 81 -5.5 -4.78149 | CGCACAACTCAAAAA GCTCA TTG CGAGC ATCGTCACCGATTCG Rfer_3240 3590119 - 3591417 + | tryptophanyl-tRNA synthetase TERM 3445 3591558 - 3591590 + T 100 -16.5 -5.58074 | opp_overlap 3591558 CCGCCAAAAAACAAA GCTCTTTCACCAAAT AAA AATTGGTGAAAGAGC TTTTTTTCATGGTTA TERM 3446 3591590 - 3591558 - T 100 -16.5 -5.04249 | opp_overlap 3591558 CCGCCAAAAAACAAA GCTCTTTCACCAAAT AAA AATTGGTGAAAGAGC TTTTTTTCATGGTTA Rfer_3241 3593351 - 3591633 - | diguanylate cyclase Rfer_3242 3594377 - 3593355 - | extracellular solute-binding protein Rfer_3243 3595742 - 3594384 - | seryl-tRNA synthetase TERM 3447 3595543 - 3595561 + g 74 -6 -4.49556 | overlap 3595547 TGACCGGCTGCGCCC TTGGCC TTGAGCT GGCCAA TTTGTTTGCTCAAGG Rfer_3244 3596430 - 3595786 - | ABC transporter related Rfer_3245 3598075 - 3596423 - | binding-protein-dependent transport systems inner membrane component TERM 3448 3596769 - 3596742 - G 70 -3.4 -4.64766 | gap 1, overlap 3596745 GTGACACGCCAAAAA GTACGCTGCGG ACTGGCA CC-CAGCGTGC GGGCAGCGTGCAGCA TERM 3449 3596955 - 3596942 - G 71 -8.1 -4.0162 | overlap 3596951 3596952 CGGTGACACCACAAA CGGCA GAAA TGCCG CGGCGCGCCAGGGCA TERM 3450 3597532 - 3597503 - G 71 -8.5 -4.09685 | gap 1 CTCGACCCGCCAAAA CGCCCGCCACGGCG TGG CGCC-CAACGAGCG TGCCGCCGCCACCTG TERM 3451 3597635 - 3597611 - G 70 -3.4 -4.61633 | overlap 3597613 ACACAGGTTGAAAAA CAGGTTGCCG TACAG CAGCAGCCAG GGCGTGTTGTGCAGG Rfer_3246 3599109 - 3598087 - | ABC transporter periplasmic-binding protein TERM 3452 3598378 - 3598397 + g 90 -4.2 -5.31059 | gap 1, overlap 3598371 3598370 CTTGAGGTTCAGGCT CGCCGTGGG CGA CTC-TGGCG TTTTTTCCTTGCTGT TERM 3453 3599031 - 3599006 - G 76 -6.1 -4.65895 | opp_overlap 3599009 TTGGGCAGTGAAAAA GAACTGTGCAC CATC ACGCGCAGTTC ATCGGCCGCACGGGC Rfer_3247 3599897 - 3599313 - | transcriptional regulatory protein NadR TERM 3454 3599747 - 3599734 - G 77 -3.8 -4.91712 | overlap 3599736 3599737 TGCAAGTCACAAAAA GAGC GCAGAT GCTC TGGCACCCACAGGCT Rfer_3248 3600905 - 3599943 - | hydroxymethylbutenyl pyrophosphate reductase Rfer_3249 3601366 - 3600902 - | peptidylprolyl isomerase, FKBP-type Rfer_3250 3604877 - 3601767 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) TERM 3455 3601827 - 3601805 - G 74 -12 -3.53091 | AGCCCGCTGCGCAAA GCTGCTCGAA ATC TTCGAGCGGC ACCGGTCGGCTGAAG TERM 3456 3601879 - 3601846 - G 71 -7.3 -4.15044 | overlap 3601848 GGTCGGCTGAAGAAA TAGCCCTGATAGGCC TGGC AGCCTGCCTGGGCCA GGAAGTCCCGTTGCG Rfer_3251 3605668 - 3604874 - | hypothetical protein TERM 3457 3605196 - 3605167 - G 81 -15.7 -2.87683 | gap 1, opp_overlap 3605156, overlap 3605155 3605153 ACAGCGTCTCATACA GCGGC-GCCAGGCC ATT GGCCTGGCTGACGC GGTTGGCGAGCGTGA TERM 3458 3606095 - 3606054 - g 83 -4.9 -5.0538 | opp_overlap 3606053, overlap 3606055 CTGGAGCTGAAAAAA TCCGGCAGCGACGACAACG ATGG CTTTGACGGCATTGCCGGG CTCTTACACGCCACG Rfer_3252 3605889 - 3606593 + | DNA repair protein RadC Rfer_3253 3606593 - 3607246 + | Smr protein/MutS2 Rfer_3254 3607665 - 3607261 - | globin Rfer_3255 3610245 - 3607726 - | hypothetical protein TERM 3459 3608312 - 3608294 - G 95 -2.2 -5.69473 | overlap 3608295 3608296 TACATGACAAAAAAA TTGGCCCG CAT CGAGCCCC AGTCCACTTTGCGCA TERM 3460 3609474 - 3609532 + g 85 -8.7 -4.62069 | opp_overlap 3609451 CGCGCGCCAGTGTCT GCCCCAGTTCCG-GGCGCCCGCCTTGCAG CGA CTCCAC-GCGCACGCCGCGCACCTGGGGC TTTTTGACCTCAAGC Rfer_3256 3611197 - 3610355 - | formate dehydrogenase, subunit FdhD TERM 3461 3611041 - 3611015 - G 82 -12.2 -3.61398 | CTGGTTGCGCAAGAA GCCCAGCACCAG CAG CTCGGGCTGGGC GCCCAGCGTCATCAG TERM 3462 3611106 - 3611086 - G 71 -7.6 -4.03234 | gap 1 GCTTGTCGACATAAA CGG-TGAGC GCGC GCTCAGCCG GGATGGAGACCGTGT Rfer_3257 3611622 - 3611203 - | hypothetical protein TERM 3463 3611351 - 3611336 - G 70 -3.9 -4.72272 | overlap 3611337 GGCGCGTACGAAAAA GCGCC CGGATC GACGC AGGGCGGCATGGCCG Rfer_3258 3612814 - 3611624 - | formate dehydrogenase, gamma subunit Rfer_3259 3613049 - 3612828 - | putative lipoprotein Rfer_3260 3613678 - 3613046 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3464 3613588 - 3613604 + g 70 -4.3 -4.57073 | overlap 3613584 3613589 GCCGGTTCACGCCCC AGGGCAC CTC GTGCTCG TTTTTGCAAGCCGTG Rfer_3261 3616712 - 3613752 - | twin-arginine translocation pathway signal TERM 3465 3614168 - 3614190 + g 75 -2.6 -4.9218 | opp_overlap 3614160, overlap 3614154 3614145 3614170 TGATGAACGGGAATT TCTCGTGCAC CTT GTCCGCGATA TTTTTATCCTGAATC TERM 3466 3614892 - 3614906 + g 72 -2.8 -4.76312 | overlap 3614893 CTCCGGCATGGGCTC ATCCAT GCC ATGGAC TTTTTGCATCTTGTA TERM 3467 3616355 - 3616377 + g 74 -12.7 -3.14564 | CGCGCAAGGCGGCTC CCTTGGCGC AATGG GCGCCGAGG TTGATGGGGGAGTCA Rfer_3262 3616983 - 3616777 - | hypothetical protein TERM 3468 3616955 - 3616945 - G 95 -2.4 -5.63517 | GGCCGAAAGAAAAAA TCCG CGA CGGG ACGGCTTGGGCTGGC Rfer_3263 3617758 - 3617135 - | cytoplasmic chaperone TorD TERM 3469 3617215 - 3617178 - G 100 -12.5 -4.38712 | opp_overlap 3617178 TCCACCGCCACAAAA GCGCGGGTCAGCCCGGC CAGC GCCGCGTAGAACCGCGC TTTGGGGTGCTGCTG TERM 3470 3617178 - 3617215 + g 90 -14.7 -3.62572 | opp_overlap 3617178 TCCACCGCCACAAAA GCGCGGGTCAGCCCGGC CAGC GCCGCGTAGAACCGCGC TTTGGGGTGCTGCTG TERM 3471 3617614 - 3617598 - G 77 -7.9 -4.36914 | GGTTCTTCCAGAAAA GCCCCAG CCG CTGGTGC CTCGGTCACGGCCAG TERM 3472 3617689 - 3617677 - G 71 -9.1 -3.72788 | overlap 3617686 GCGCATAATACATAA GGGCT AGA AGCCC ATAGAGCTCTGAACG Rfer_3264 3619854 - 3617761 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3473 3618453 - 3618474 + gr 71 -9.4 -3.73647 | CCATCTGGCCCTCGA GTGCCGCA CGGTAT TGCGGCGC TTCTTCGTCCGTCAG TERM 3474 3618588 - 3618608 + gr 74 -6.7 -4.25283 | opp_overlap 3618582, overlap 3618590 GCGGCAAGACCCGGG CCGGAACGC CGT GCGTGCCTG TTTTGCTGGCACGCT TERM 3475 3619000 - 3618967 - GR 100 -9.6 -5.36441 | gap 1, overlap 3618994 TTTGTAGACAAAAAA GCGCGGCTT-CTCGA ACTCG CCGACCAAGCCGCGC AACTGCAACAGCGTC TERM 3476 3619789 - 3619769 - GR 70 -3.2 -4.63486 | gap 1, overlap 3619772 3619773 ACCGCTTGAAGAAAA GCACCCGCC TCAC GGCG-GCAC AGGGTGGAGTGAAGC Rfer_3265 3620497 - 3619814 - | hypothetical protein TERM 3477 3620310 - 3620260 - GR 75 -12.3 -2.9914 | gap 1, opp_overlap 3620274 3620277 3620296 CATCGTCCAGAGACA GCGGCGCAAGCTGGGCCGGGCTGG CTGG CGCGCCTGGCCCGGCA-GCACCGC CCTGATTGATCGGGT Rfer_3266 3621047 - 3620490 - | hypothetical protein TERM 3478 3621360 - 3621337 - R 100 -6.7 -5.80817 | opp_overlap 3621337, overlap 3621327 CTGAACAGAAAAAAA GAAGACCCC AATCAA GGGACCTTC CTTTTTATCTGAACA Rfer_3267 3622285 - 3621665 - | glutathione S-transferase-like Rfer_3268 3623707 - 3622436 - | cyanophycinase-like protein Rfer_3269 3626808 - 3623980 - | formate dehydrogenase, alpha subunit TERM 3479 3625984 - 3625952 - G 100 -14.9 -4.26188 | opp_overlap 3625957 3625976 TGCACATAGTCAAAA CCAAAGCGGCCTTTG ACG CACAGGCGGCTTTGG TTGGCCGGACCGTCG Rfer_3270 3628584 - 3626809 - | NADH dehydrogenase (quinone) TERM 3480 3627108 - 3627095 - G 71 -8.1 -4.00348 | GCCGAACCAATGAAA CAGCC GTAG GGCTG AAGGGTGTCGAAGTC TERM 3481 3627458 - 3627471 + g 71 -9.5 -3.77219 | opp_overlap 3627445 TAGGGCGGGCGCAGG CGCGG CTGG CCGCG TTTGCCTTCGATGCT Rfer_3271 3631229 - 3628689 - | putative prolin-rich exported protein TERM 3482 3629507 - 3629531 + g 79 -14.9 -2.86271 | opp_overlap 3629492, overlap 3629504 CCGGCGGTGTGGGTT GCCGCGCGGCC TGG GGCTGCGCCGC TCCTTGTGGTGGCGC TERM 3483 3629934 - 3629910 - G 95 -15.7 -3.89346 | CTGCGACTGCACAAA CGTGGTCGTCG GCA CGGCGACCACG GCGCCCGGCACCTGC TERM 3484 3631033 - 3630982 - G 91 -13.7 -3.85698 | CCCGCCGGTGAGAAA CTGACCGCGCCCGCG-GTGTAGCCC AGAC GTGCCACGCGCGAGGGCG-GGTCAG CGCTGGCCGCACCGC TERM 3485 3631085 - 3631062 - G 84 -5.8 -4.87626 | overlap 3631064 GCTGAAGACGAAAAA CGCGGCACCG ACAA CGAAGCCGAG CACCCGAAAACCAAG Rfer_3272 3632413 - 3631322 - | putative iron sulfur binding protein TERM 3486 3632105 - 3632117 + g 77 -3.3 -4.87318 | ACCCTTGCCGGATGC CACCG CCA CGATG TTTTTGACTTTTGGC TERM 3487 3632246 - 3632259 + g 71 -8.1 -4.08767 | opp_overlap 3632255 CAGCGCCTTGCGAAT GCCAG GAAT CTGGC TTTTGGCCGGGTAGC TERM 3488 3632657 - 3632637 - g 70 -4.5 -4.50976 | overlap 3632620 3632639 GCCGACATCAGAAAA GCCGCCGGC GTG ACCGGGCGC ACCAATCCGTTTCCC TERM 3489 3632677 - 3632734 + G 86 -13.3 -3.53091 | gap 1 ATCCGTTTCCCATCA TCACCGGCACCTC-GGCCGGCGCCGT CAACGCC GCGGCACTGGCCTGCGGCGCCGATGA TTTCGACACCACGGT TERM 3490 3633667 - 3633710 + G 78 -2.2 -5.09895 | gap 1, opp_overlap 3633661, overlap 3633668 GCGAATTGATGGCGC TGGGC-CACGCCGACGCCATG CGG CAACGCGTCGAGGTGTGCACG TTTTTTGGCTGGGTC Rfer_3273 3632526 - 3633809 + | patatin Rfer_3274 3633996 - 3634205 + | CsbD-like TERM 3491 3634300 - 3634250 - f 77 -4.6 -4.84761 | gap 3, overlap 3634207 ACATCGCCAGAAAAA GCAGCCTCAGCCACAGCCTTGAACC CAGT GGCCCC-GGCAGGGGC-G-GGCTGC GTGGTGACGCCGCAG TERM 3492 3634347 - 3634331 - f 74 -6.5 -4.23781 | overlap 3634326 CCGACTAAAATCAAA GGCTGTC CTT GAAAGCC CCGCTCCATGCCACG TERM 3493 3635357 - 3635374 + G 70 -3.3 -4.59773 | CGCAAAACGCCCAAC GCGGTGT TTGT GCACGGC TTTTTGACGGTCAAC metG 3634355 - 3636457 + | methionyl-tRNA synthetase TERM 3494 3637457 - 3637468 + G 89 -4.4 -5.20216 | CAAGGCCGGGCTGTA TGCA CTGG TGCA TTTTTTGATGATCTC TERM 3495 3638021 - 3638037 + G 91 -5.7 -5.40072 | overlap 3637979 3638022 GGCCCTGAGCATCAC GCGCGCC TTT GGCGTGA TTTTTTTGGGCAACG TERM 3496 3638022 - 3638036 + G 71 -9.2 -3.83561 | overlap 3637979 3638021 GCCCTGAGCATCACG CGCGCC TTT GGCGTG ATTTTTTTGGGCAAC TERM 3497 3638385 - 3638347 - g 72 -12.5 -3.05769 | gap 1, opp_overlap 3638362, overlap 3638354 GCCTCAAACGACAGA CACCA-AACCGCAACGCC ACCT GGGGTTGCGGCTATGGCG CGCCCAATGCGCGCA TERM 3498 3638377 - 3638354 - g 86 -12.4 -3.91597 | opp_overlap 3638362, overlap 3638347 ACGACAGACACCAAA CCGCAACGCC ACCT GGGGTTGCGG CTATGGCGCGCCCAA TERM 3499 3638465 - 3638453 - g 76 -6.3 -4.65895 | CGGCCGATTCAAAAA CATCA TGC TGATG CTCCAGCGGAAAAAA Rfer_3276 3636687 - 3638702 + | NADH dehydrogenase (quinone) TERM 3500 3639103 - 3639121 + G 72 -2.2 -4.77036 | overlap 3639105 3639106 3639118 AGCGTCGTTTTCCAC CTATGCCG AGC CGGCGCTG TTTTTGCTGATCGGC Rfer_3277 3638699 - 3639625 + | NAD-dependent dehydrogenase subunit Rfer_3278 3639622 - 3640230 + | hypothetical protein TERM 3501 3641300 - 3641321 + G 84 -8.7 -4.48221 | overlap 3641318 TGTCGCCCCGCTGAG CGGCGTGAT CCGG GTCATGCCG TTTTCTGGCTTGCTG TERM 3502 3641339 - 3641349 + G 81 -5.4 -4.7629 | overlap 3641346 TTCTGGCTTGCTGTT TACC GTG GGTA TTTTTGCCTTGCTGG TERM 3503 3641458 - 3641472 + G 78 -4.3 -4.82901 | TCACGCTGATGTGTG TGATG CTGAC CATCA TTTTTGTGGCAACCG Rfer_3279 3640227 - 3641669 + | NADH/ubiquinone/plastoquinone (complex I) Rfer_3280 3641672 - 3643168 + | NADH-ubiquinone oxidoreductase, chain 49kDa TERM 3504 3643859 - 3643899 + G 93 -11.7 -4.42062 | opp_overlap 3643858 3643859 TGGACAACTTCAAAC CGGCGCTGTATGTGCCGGG CTG CCCGGCGCATCCGCTGACG TTTATTTCGGGCATC Rfer_3281 3643177 - 3643941 + | NADH ubiquinone oxidoreductase, 20 kDa subunit Rfer_3282 3644592 - 3643984 - | LuxR family transcriptional regulator Rfer_3283 3644671 - 3645837 + | acetyl-CoA acetyltransferase TERM 3505 3645854 - 3645872 + G 73 -10.2 -3.58343 | overlap 3645857 3645858 CCTGGCGCAACTGCT GGTGCGCG CCG CGCGCGTC TTTCCGGATCGTCCG Rfer_3284 3645834 - 3647366 + | AMP-dependent synthetase and ligase Rfer_3285 3647360 - 3648142 + | short-chain dehydrogenase/reductase SDR TERM 3506 3649231 - 3649198 - g 70 -3.2 -4.69053 | gap 3, overlap 3649199 3649216 CATGACGCAACAAAA TGCGGCGCTGGTCGAAG AGG CCTCG-C--GCACCGCA GCGGGCTTGCAGGAG Rfer_3286 3648191 - 3649690 + | methyl-accepting chemotaxis sensory transducer Rfer_3287 3650274 - 3649759 - | NADH ubiquinone oxidoreductase, 20 kDa subunit Rfer_3288 3651830 - 3650271 - | NADH-ubiquinone oxidoreductase, chain 49kDa Rfer_3289 3653289 - 3651835 - | hydrogenase 4 subunit F TERM 3507 3652071 - 3652048 - G 90 -4.4 -5.42975 | gap 1, overlap 3652050 CGACACAAACAAAAA CG-GCGCCGCC CAG GGCTGCTCACG CATGGCGGTGGTCAG TERM 3508 3652423 - 3652411 - G 74 -3.3 -4.8048 | CCGTGACAGGAAAAA GGTCG CCA CCACC ACCGACAGCAGGCCA TERM 3509 3652727 - 3652737 + g 72 -2.4 -4.83169 | opp_overlap 3652713, overlap 3652713 3652712 AGCGTGGCCCCCTCC GGGC CGA GCAC TTTTTCTGCCGCCAT Rfer_3290 3653951 - 3653292 - | hydrogenase 4 membrane component Rfer_3291 3654898 - 3653948 - | respiratory-chain NADH dehydrogenase, subunit 1 Rfer_3292 3656919 - 3654895 - | hydrogenase 4 subunit B TERM 3510 3655476 - 3655510 + g 71 -6.4 -4.25104 | gap 1, opp_overlap 3655469 AAAGCATACCCGCGC GCTCCCAGGTGC-CG GCGTCA TGCGCGCCTGAGAGC TTTTCCTCACGCGGC TERM 3511 3655704 - 3655691 - G 82 -9.5 -4.3739 | overlap 3655693 3655700 3655701 CACTCCGCGACAAAA CCGCC AAAA GGCGG CAGACCGGCACAGGC dcd 3657591 - 3657022 - | deoxycytidine triphosphate deaminase TERM 3512 3657672 - 3657686 + H 70 -5.6 -4.42806 | GACGTAATAGGGTCG CGGGCT GGA GGCCTG TTTCTTTGCGAATCC Rfer_3294 3657739 - 3658137 + | hypothetical protein Rfer_3295 3659591 - 3658254 - | guanine deaminase TERM 3513 3659344 - 3659323 - G 75 -8 -4.19336 | opp_overlap 3659322, overlap 3659324 AACCACGGCAACAAA CCATCGGC GGGTGA GCCGATGA CCTTGGTCTGCGGAA TERM 3514 3659406 - 3659382 - G 78 -10.7 -3.87994 | gap 1 ATGCAGGTCCACAAA GCCGGGGGCG ATGATG CGCCCC-GGC AGGTGCTCGATCTCC Rfer_3296 3660693 - 3659602 - | basic membrane lipoprotein TERM 3515 3660681 - 3660656 - G 75 -2.3 -4.99645 | overlap 3660658 3660659 ACGGGAGAAATAAAA CAGGCGGCCGC GAGC GCGGCGACGAG GTTTTTATACATGGT TERM 3516 3660753 - 3660727 - R 100 -20.2 -5.19879 | opp_overlap 3660720 3660730 TCCGAAACATAAAAA CAAGGCCCGCCG GAG CAGCGGGCCTTG GCTGTGATTTTAACG TERM 3517 3660730 - 3660750 + r 87 -13.9 -3.18796 | opp_overlap 3660727, overlap 3660720 GAAACATAAAAACAA GGCCCGCCG GAG CAGCGGGCC TTGGCTGTGATTTTA Rfer_3297 3661840 - 3660803 - | adenosine deaminase TERM 3518 3661228 - 3661206 - G 74 -12.7 -3.12999 | gap 1 GCACTCCAGATGTAA GCGGGCG-GG CCCT CCTCGCCCGC ATGGGCCACCAGCCG Rfer_3298 3662763 - 3661846 - | NAD-dependent epimerase/dehydratase TERM 3519 3661935 - 3661919 - G 71 -9.3 -3.72576 | overlap 3661920 GCCCGCGCCAGCAAA CCGTCGG CCA CCGTCGG GTAGCGCAACGCCAG Rfer_3299 3662948 - 3664030 + | CDP-6-deoxy-delta-3,4-glucoseen reductase TERM 3520 3664254 - 3664242 - g 76 -10.5 -3.7941 | CATCGTCGACAACAA GCCCG GTG CGGGC GGCAACATCGGCGCT TERM 3521 3664596 - 3664573 - g 78 -2.2 -5.07107 | overlap 3664575 3664576 GAAATGTTCAAAAAA GAGGCCGGCA TCTT TGCCGTGCAC ATTCCCTACAACGGC Rfer_3300 3664051 - 3665022 + | hypothetical protein Rfer_3301 3666120 - 3665002 - | 4Fe-4S cluster binding TERM 3522 3665321 - 3665297 - Gf 71 -6.3 -4.25104 | opp_overlap 3665310 GGGCGTTCATCAAAA TCGGGCAAGGC GCT GCGCTGCGCGA ACTTGTTCCACGGGC TERM 3523 3666211 - 3666159 - gH 71 -9.6 -3.50853 | gap 1, opp_overlap 3666169 3666193, overlap 3666156 GTGGCCGAACGAGAA CGCCACGC-GGGACTTCGCCGTGGC GCTG GCCAACGCGCCGGCCCTGCGCGACG CCTTCATCGAATTGC Rfer_3302 3666100 - 3666651 + | hypothetical protein TERM 3524 3666955 - 3666938 - g 77 -8.3 -4.36914 | opp_overlap 3666938 TCGGGCCGGACAAAA CGCGCCG GGCA CGGTGCG TCTGGTGCTGGACTT TERM 3525 3667587 - 3667565 - g 74 -6.8 -4.36914 | opp_overlap 3667574 TGTGCGGGTACAAAA GGCGCGCCAG GTC CAGGCGGACC TTTTTGTCAGCCTGC TERM 3526 3667574 - 3667587 + G 91 -8.1 -4.84359 | opp_overlap 3667565 ACAAAAGGCGCGCCA GGTCC AGGC GGACC TTTTTGTCAGCCTGC TERM 3527 3667739 - 3667772 + G 73 -10.1 -3.59979 | overlap 3667742 CGGTGGCTTGAATGT CAAGGCCCGGGACGC CCAA GTGACGCGGGCCCTG TTTGACATGAGCACC Rfer_3303 3666648 - 3668072 + | N-acetylmuramoyl-L-alanine amidase Rfer_3304 3668204 - 3668752 + | hypothetical protein Rfer_3305 3669436 - 3668789 - | DedA protein (DSG-1 protein) Rfer_3306 3670462 - 3669641 - | iron permease FTR1 TERM 3528 3670454 - 3670441 - G 72 -2.3 -4.7497 | GCGATTCACGAAAAA CGATG AGTG CAGCG GCGAACATGGCGGTT Rfer_3307 3670812 - 3670483 - | hypothetical protein TERM 3529 3672880 - 3672830 - g 79 -8.8 -4.19678 | overlap 3672835 TGACACTGGAAGAAA TGAACGCGCTGCTGCGCCAGATGG AAG CCACCGAGCGCAGCGACCAGTGCA ACCACGGCCGCCCGA Rfer_3308 3670957 - 3672951 + | DNA mismatch repair protein MutL TERM 3530 3673352 - 3673382 + G 74 -11.8 -3.54424 | overlap 3673355 TGTGGGCTTGATTGC CGTGCTGCTGGCGA ACC TGGCCGGCAGCGTG TTTGACCACCTGGCG TERM 3531 3673608 - 3673634 + G 76 -12.2 -3.28912 | GGCTTGCCCCGGCTG GGTGGCCTGGGC TGC GCCTGGTCCACC TTGGTCTGCGTCTGG Rfer_3309 3673002 - 3674441 + | MATE efflux family protein Rfer_3310 3674948 - 3674448 - | hypothetical protein TERM 3532 3675181 - 3675199 + r 77 -7.5 -4.36914 | opp_overlap 3675198 CAACAAAGCATAGCG CGCTATA AATAA TATAGCG TTTTATAACGACGAA Rfer_3311 3676407 - 3675202 - | monooxygenase, FAD-binding Rfer_3312 3677202 - 3676420 - | short-chain dehydrogenase/reductase SDR Rfer_3313 3677356 - 3678246 + | twin-arginine translocation pathway signal Rfer_3314 3680122 - 3678275 - | anthranilate synthase component I/chorismate-binding protein TERM 3533 3678534 - 3678555 + g 91 -13.7 -3.80573 | gap 1, opp_overlap 3678532 AAGGTGTCGAATACG CCCGGC-GCG CTG CGCAGCCGGG TTTCGTAATGCTGGC TERM 3534 3678988 - 3678968 - G 74 -7.5 -4.36914 | CGGCTCGGCATAAAA GGTAATGGC GCT GCCAACACC AAAGTGACCGTGCCA Rfer_3315 3682711 - 3680291 - | putative ATP-dependent protease La, putative TERM 3535 3681288 - 3681276 - G 70 -4.8 -4.56597 | overlap 3681252 GCTGGGGCCGAAAAA TGGG GCAAG CCCA AGCGGGCCGCGGTGT TERM 3536 3681542 - 3681563 + g 72 -10.9 -3.30243 | gap 1, opp_overlap 3681538 GATCTGCAAACGGCC GCTGC-GCGT GAA ACGCCGCAGC TTCTCCCACATCCAT TERM 3537 3682022 - 3682043 + g 81 -13.7 -3.28712 | overlap 3682024 CAGGCCTTCATTCAT GACCCGCTC TATC GGGCGGGTC TTGTCCAGAAAGCGG TERM 3538 3682259 - 3682271 + g 75 -7.7 -4.26019 | overlap 3682234 GGCCTTGGCCTGTTC GACCT TGT AGGTC TTTTCGATGTGCTTG TERM 3539 3682408 - 3682377 - G 76 -10.8 -3.73072 | gap 1, opp_overlap 3682380 3682384, overlap 3682364 AACTGGCGCAGCAAA CGT-CCCTGCCCCGG TGG CAGGCGCAGGGCACG GGGCTTGTCCGGCGC TERM 3540 3682663 - 3682649 - G 74 -11.4 -3.55447 | GGAGGTATCAGAGAA CCCGAG GGA CTCGGG AGCGACCGTGACGCG TERM 3541 3682747 - 3682767 + H 77 -8.3 -4.11484 | overlap 3682763 GGTTTCATGCAATTT CTGGAGAAC AGT GTTGTCCAG TTTTGCAAAGTTGGC Rfer_3316 3682835 - 3683842 + | luciferase-like TERM 3542 3683931 - 3683943 + G 71 -7.7 -4.07133 | overlap 3683910 GGCCTACCAGTTGGC CAGCA CCC TGCTG TTCTTTGTGGCGATC Rfer_3317 3683839 - 3684117 + | putative lipase Rfer_3318 3684690 - 3684208 - | RDD TERM 3543 3684446 - 3684388 - G 70 -3.2 -4.58283 | opp_overlap 3684409, overlap 3684389 3684391 3684393 CAACGCTGGCAAAAA CCAGAGCCAGCAGAGCACA-TAGCGC-AGC AAA GCTCGCGCTTGTGTGATGGGCTGGC-C-GG CACGATCCACCACCT TERM 3544 3684459 - 3684473 + g 84 -10 -4.25104 | overlap 3684452 CGGCACGATCCACCA CCTGGA TGT TCCAGG TTTTCATGGCCAGGG Rfer_3319 3685323 - 3684691 - | putative transmembrane protein TERM 3545 3684932 - 3684948 + g 76 -5.8 -4.66163 | gap 1, overlap 3684934 CTGAGCGCTTGGTAG GCCTGCC AAGT GGC-GGC TTTTTGGGTCGGACT TERM 3546 3685369 - 3685347 - R 95 -6.3 -5.30155 | gap 1 CCAGTAAGCAAAAAA TGGCGC-CAA AAAC CTGCGCGCCA GCCCTGAAGGGCCGA Rfer_3320 3685866 - 3685429 - | putative transmembrane protein TERM 3547 3685494 - 3685472 - G 85 -6.1 -5.10029 | AGGAACTGCAAAAAA CCCGGGTCC GCATA GGCCGCGGG TGGCAAGTCATCGGT Rfer_3321 3686429 - 3685863 - | RNA polymerase factor sigma-70 TERM 3548 3686393 - 3686411 + g 74 -6 -4.44608 | CACGTTTTTCAACGT CTTTCAGA AAA TCAGAAAG TTCTTTTTCAGTGGC Rfer_3322 3686721 - 3688544 + | acetolactate synthase 3 catalytic subunit ilvH 3688634 - 3689125 + | acetolactate synthase 3 regulatory subunit TERM 3549 3689713 - 3689735 + G 77 -8.4 -4.36914 | opp_overlap 3689710 3689707, overlap 3689716 GGAAGAAACCGAGAC CGACCTGTTC GGC GAACAGGCTG TTTTGTGCGGCGGCA Rfer_3324 3689147 - 3690163 + | ketol-acid reductoisomerase TERM 3550 3690151 - 3690140 - f 74 -4.4 -4.78157 | overlap 3690142 ATCAAAAAGAACAAA TTGG TTGA CCAA ACCCGCAACTAAGAC TERM 3551 3690182 - 3690205 + F 95 -15.4 -3.26649 | opp_overlap 3690186, overlap 3690186 GTACGACACTCCCGA CAAAGGCCAC TTCA GTGGCCTTTG TTACTATGAAGGTCT TERM 3552 3690186 - 3690201 + F 90 -10.4 -4.29106 | opp_overlap 3690186, overlap 3690182 GACACTCCCGACAAA GGCCAC TTCA GTGGCC TTTGTTACTATGAAG TERM 3553 3690201 - 3690186 - f 80 -10.4 -3.87373 | opp_overlap 3690182 3690186 GACACTCCCGACAAA GGCCAC TTCA GTGGCC TTTGTTACTATGAAG TERM 3554 3690573 - 3690587 + G 71 -7.1 -4.2074 | overlap 3690559 GGCCTGGGACGCTGG GGCTG GATTG CAGCC TTTGTCTATTGCGCG TERM 3555 3690673 - 3690695 + G 74 -12.6 -3.1506 | overlap 3690690 GCTATTTTCAGGGTT TGCCGTCGCC GGC GGCGGCGGCC TTGCTGGCCGGGTTT TERM 3556 3690857 - 3690845 - g 74 -3.3 -4.8048 | TGTGCACATGAAAAA GAGCG TGC CGTTC ATCGTGATTGTGCTG Rfer_3325 3690234 - 3691046 + | CDP-diacylglycerol--serine O-phosphatidyltransferase Rfer_3326 3691148 - 3691867 + | Crp/FNR family transcriptional regulator TERM 3557 3691963 - 3691989 + G 70 -10 -3.494 | GTTGTCGCCCTGTCC GCCTGGCTGGAT AAA AACCTGCCGGGC TTCTGTGGCCCGTTG Rfer_3327 3691888 - 3692973 + | aminoglycoside phosphotransferase TERM 3558 3693086 - 3693063 - g 70 -3.1 -4.66537 | overlap 3693066 TCCCCCAAGACAAAA GAACTGCAA GTCAAA TTGCAGGCC TTTATGAATGACTAC TERM 3559 3693083 - 3693066 - g 74 -5.6 -4.44211 | overlap 3693063 CCCAAGACAAAAGAA CTGCAA GTCAAA TTGCAG GCCTTTATGAATGAC TERM 3560 3693219 - 3693204 - g 89 -4.6 -5.27335 | overlap 3693205 GGGCTGAAACAAAAA GCCCAG GCGG CTGGCC TGTGGAACCTGTTTT Rfer_3328 3693033 - 3694283 + | acyl-CoA dehydrogenase-like TERM 3561 3694310 - 3694348 + T 84 -13.2 -3.14683 | opp_overlap 3694321 3694322, overlap 3694314 3694321 GAGCGGCGGTCACAC TGGAGGATCAAGCGCCAC GGT GTGGCGATTGATCCTGAA TTAATAGCGACATAT TERM 3562 3694314 - 3694344 + T 95 -18.4 -2.56596 | opp_overlap 3694321 3694322, overlap 3694310 3694321 GGCGGTCACACTGGA GGATCAAGCGCCAC GGT GTGGCGATTGATCC TGAATTAATAGCGAC Rfer_3329 3695603 - 3694404 - | metal dependent phosphohydrolase TERM 3563 3694579 - 3694563 - G 75 -2.1 -4.96848 | opp_overlap 3694564 3694565, overlap 3694565 TTTGGTAGAGAAAAA CACCTTG ACA CGGGGTG TCGTCAAGGACTTGC TERM 3564 3695364 - 3695389 + g 73 -4.7 -4.6951 | gap 1, overlap 3695361 3695365 CGCGGCCGAGACCGG T-GCCAGCTGAC GCC GTCCGTTGGCTA TTTGTTTTAGCTCAT TERM 3565 3695365 - 3695387 + g 78 -9.8 -3.95475 | overlap 3695361 3695364 GCGGCCGAGACCGGT GCCAGCTGAC GCC GTCCGTTGGC TATTTGTTTTAGCTC TERM 3566 3695576 - 3695562 - G 93 -8.6 -5.00884 | overlap 3695563 ACTGGTGCGAAAAAA TGGATG CTC CATCCA GGAGCCGCAAAACTC TERM 3567 3695605 - 3695563 - G 73 -9.9 -3.60048 | gap 1, overlap 3695562 CTGGTGCGAAAAAAT GGATGCTCCATCCAGGAGCC GCAA AACTCCTGCA-GGTGCATCC CGAGGGTGAGTTGAT Rfer_3330 3696851 - 3695679 - | TPR repeat-containing protein TERM 3568 3696163 - 3696199 + g 70 -12.1 -2.90714 | overlap 3696168 AGTTGCTGGGCTTGC GCCAGGGCCTCCTGCGC GGC GGGCGGGCGGGCTTGGC TCTGTGGCGCTTTCA Rfer_3331 3697798 - 3696866 - | general secretion pathway protein, ATPase Rfer_3332 3699642 - 3697798 - | type II and III secretion system protein TERM 3569 3698031 - 3698015 - G 73 -5.1 -4.69559 | AAAGTGGAAAACAAA GGCAC GTCGCTG GTGCC GGGCAAGCCTGAGGA TERM 3570 3698549 - 3698529 - G 78 -6.8 -4.63184 | overlap 3698530 AAGCCAGTCCAAAAA GGCCAGCA CCCGC TGCTGGCA ACGAGATGCCGTCGG TERM 3571 3698670 - 3698692 + g 79 -7.6 -4.56597 | CGCCGATCACGCCCA TGGCGCCGGT CGA ACCGCCACCA TTTTTCAAAGCCGAC TERM 3572 3699323 - 3699309 - G 85 -2.7 -5.42259 | CGATGGCCAAAAAAA CCTCG CGGGC CGGGG CGTTGTTCACCAACA Rfer_3333 3700178 - 3699654 - | hypothetical protein Rfer_3334 3700828 - 3700175 - | hypothetical protein TERM 3573 3700483 - 3700516 + g 71 -8.7 -3.83066 | gap 1, opp_overlap 3700465, overlap 3700485 TCAGCGCCTGCGCCA GTGGCGTGGCCCGGGC GGT GCCCGG-CAACACCTC TTTGATGGTCTGGTT TERM 3574 3700485 - 3700514 + g 70 -9.9 -3.49482 | gap 1, opp_overlap 3700465, overlap 3700483 AGCGCCTGCGCCAGT GGCGTGGCCCGGGC GGT GCCCGG-CAACACC TCTTTGATGGTCTGG Rfer_3335 3701514 - 3700825 - | fimbrial assembly Rfer_3336 3702680 - 3701583 - | hypothetical protein TERM 3575 3701855 - 3701841 - G 81 -5.6 -4.72986 | CACCTCGATCAAAAA GCGTTG TGC CGACGC ATCGTGCATGCTCAC TERM 3576 3702135 - 3702177 + g 71 -6.9 -4.14392 | gap 1, opp_overlap 3702128 3702132 3702133, overlap 3702136 3702163 3702167 CACCAACACCAAGGC CGCGTTGGCC-CGCTCGG CACGGCCA TCGCGCGCGGCCAGCGCA TTTTGCAGATTGCGC TERM 3577 3702512 - 3702486 - G 73 -10 -3.57462 | overlap 3702473 GATGCGAGCCTCAAA CCCCCTCAGGCC CAA GGCCTGCAGGCG CTGCACAAATGCCTC Rfer_3337 3706447 - 3702839 - | hypothetical protein TERM 3578 3704343 - 3704359 + g 83 -2.2 -5.24129 | overlap 3704330 3704329 GAGCTTGTGCCATCA CTGATG ATGGC CAGCAG TTTTTTATAGGCCGA TERM 3579 3704802 - 3704778 - G 80 -11.5 -3.74077 | GCGCAGATACGCAAA CCACCAATCTC GTG GATATTGGTGG AGCCACCGGTAGAGC TERM 3580 3705119 - 3705069 - G 76 -5.3 -4.63218 | overlap 3705075 3705076 GTGCCGCCAAGAAAA CG-ATAACCGGTCTGGCCAGCGCCG GAA CCGCGCGCGCC-GACCGATTGCACG GTGAAACCCGGTCCG TERM 3581 3705112 - 3705075 - G 71 -9.7 -3.75686 | gap 1, overlap 3705069 3705076 CCAAGAAAACGATAA CCGGTCTGGCCAGCGCCG GAA CCGCGCGCGCC-GACCGA TTGCACGGTGAAACC Rfer_3338 3707047 - 3706628 - | hypothetical protein TERM 3582 3706978 - 3706964 - G 71 -8.5 -4.01078 | overlap 3706955 AAAAGTCAGCATAAA GCCGC CCAGC GCGGC CAGGATTACCACCAG Rfer_3339 3707895 - 3707044 - | methylation Rfer_3340 3708383 - 3707892 - | hypothetical protein Rfer_3341 3708924 - 3708376 - | methylation TERM 3583 3708880 - 3708857 - G 82 -12.4 -3.67976 | TCGATCAACGTGAAA CCACGCTGAC GCAT GCCAGCGCGG CCTGACCAACGCATT Rfer_3342 3710500 - 3709136 - | signal recognition particle protein TERM 3584 3709723 - 3709688 - G 77 -11.3 -3.57144 | gap 3, overlap 3709689 GCTGGTACCGGCAAA CTTGATCGGTGCGCC-GG TGA CCTGGCGCACCGA-CA-G CGCCGCGCCGCCGCG Rfer_3343 3710578 - 3711381 + | cytochrome c assembly protein TERM 3585 3711886 - 3711922 + G 80 -10.2 -4.08767 | overlap 3711887 GGCGGACGTTTGACG TCCAGTGGATCAGCAC AATTG GTGTTGATCTGCTGGC TTTTACCGCCCTGCA TERM 3586 3711887 - 3711921 + G 76 -13.7 -3.05046 | overlap 3711886 GCGGACGTTTGACGT CCAGTGGATCAGCAC AATTG GTGTTGATCTGCTGG CTTTTACCGCCCTGC TERM 3587 3712119 - 3712144 + G 70 -3.1 -4.64076 | GCCGCCCATTTTTTG CAGGCGGCGCT GACG GGTGCAGGCTG TTTTGTCATTTCGTT TERM 3588 3712624 - 3712608 - g 72 -2.1 -4.76892 | overlap 3712610 ATACGAACCGAAAAA CTGGCCA GTA TGGGCCG CATGTCCACTGCGGT TERM 3589 3713095 - 3713129 + G 91 -4.3 -5.52384 | gap 1, overlap 3713105 3713105 GCGACGGCCAGCCCA TGGATCAATC-GGTGG AGCG CCATCTGTTTGAACCA TTTTTTTCGTCAGAA TERM 3590 3713159 - 3713146 - g 73 -9.5 -3.85698 | opp_overlap 3713149 3713149 3713151 TTTTTTCGTCAGAAA GCCGC TCCA GCGGC CTGGGCCTTTATATT Rfer_3344 3711606 - 3713360 + | multi-sensor signal transduction histidine kinase TERM 3591 3713584 - 3713561 - g 78 -13.8 -3.19389 | overlap 3713575 GAACTGATCCAGCAA CTGCGGGCGC AACA GCGCCCGGAG CGATGCGTCGTCATC Rfer_3345 3713339 - 3714790 + | two component, sigma54 specific, Fis family transcriptional regulator Rfer_3346 3714777 - 3715388 + | N-acetyl-anhydromuranmyl-L-alanine amidase TERM 3592 3715425 - 3715440 + F 71 -7.6 -3.97834 | opp_overlap 3715406 3715425 GGTCTTTTCACATGA CCACTA CCGG TAGTGG TTTATGATGACGTTA TERM 3593 3716982 - 3716962 - g 76 -6.7 -4.57569 | overlap 3716965 GGAGTTGCGCAAAAA CACCGGCGA TGA CCGCCGTCG CACCCATGACATGAA TERM 3594 3717058 - 3717047 - g 70 -3.6 -4.65895 | opp_overlap 3717047 CGTGTCATGGAAAAA GGCC AATG GACC CTGTTCTCGCCAAAC TERM 3595 3717532 - 3717520 - g 76 -6.9 -4.57569 | CTACGCCGTGAAAAA GGCGC GTG ACGCC AATATGCGGCATCGG Rfer_3347 3715565 - 3718510 + | ribonucleotide-diphosphate reductase subunit alpha TERM 3596 3719471 - 3719442 - g 80 -3.5 -5.07652 | gap 1, overlap 3719445 GGCGTCAAAATAAAA TG-ACCGGAGCTGC CGA GCAGTACCAGTACA TCCTGCGCGATGAGT Rfer_3348 3718649 - 3719851 + | ribonucleotide-diphosphate reductase subunit beta TERM 3597 3720080 - 3720070 - g 71 -6.8 -4.15044 | overlap 3720052 GCTCCCGTGAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3598 3720098 - 3720088 - g 71 -6.8 -4.21974 | GCACCAGCCAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3599 3720116 - 3720106 - g 71 -6.8 -4.21974 | GCACCAGCCAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3600 3720206 - 3720196 - g 71 -6.8 -4.16016 | GCACCGGCTAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3601 3720224 - 3720214 - g 71 -6.8 -4.21974 | GCACCAGCCAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3602 3720260 - 3720250 - g 71 -6.8 -4.16016 | GCACCGGCTAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3603 3720422 - 3720412 - g 71 -6.8 -4.16016 | GCACCGGCTAAGAAA GCTG CAC CAGC CAAGAAAGCTGCACC TERM 3604 3720440 - 3720430 - g 71 -6.8 -4.21974 | GCACCAGCCAAGAAA GCTG CAC CAGC TAAGAAAGCTGCACC Rfer_3349 3720016 - 3720639 + | histone protein TERM 3605 3720664 - 3720687 + T 82 -11.6 -3.83561 | overlap 3720678 CTGGTTTTTCTTCAA GCCCGGTGTC GCAA GGCCCCGGGC CTTTTTTTGCCCCCG TERM 3606 3720678 - 3720688 + T 100 -8.2 -5.40072 | overlap 3720664 AGCCCGGTGTCGCAA GGCC CCG GGCC TTTTTTTGCCCCCGG Rfer_3350 3721663 - 3720722 - | Zinc finger/thioredoxin putative Rfer_3351 3722603 - 3721698 - | ribosomal protein L11 methyltransferase Rfer_3352 3724085 - 3722736 - | acetyl-CoA carboxylase, biotin carboxylase Rfer_3353 3724547 - 3724104 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein Rfer_3354 3725283 - 3724717 - | putative thioredoxin-related transmembrane protein TERM 3607 3725211 - 3725192 - G 79 -12.8 -3.54459 | overlap 3725181 3725176 CCAACGCCTCCCAAA GCGGCGGC ACCG GCCACCGC ACCCATCAACCAGCG Rfer_3355 3725872 - 3725276 - | hypothetical protein TERM 3608 3727113 - 3727123 + G 70 -4.6 -4.56597 | TGGAGTCTGGCCGAT GCCG ATC TGGC TTTTTGCCACGGGGG Rfer_3356 3725928 - 3727328 + | UDP-N-acetylmuramate Rfer_3357 3728379 - 3727411 - | lipase chaperone Rfer_3358 3729304 - 3728387 - | triacylglycerol lipase TERM 3609 3729457 - 3729468 + H 90 -5.8 -5.1615 | opp_overlap 3729457 GTTTGAGCCTGAATA GCAC GAGT GTGC TTTTTTGGATATTAG Rfer_3359 3729720 - 3730352 + | hypothetical protein Rfer_3360 3730463 - 3732220 + | type II secretion system protein E TERM 3610 3732667 - 3732677 + G 95 -6.8 -5.42259 | overlap 3732634 CGAGATGACGGGCCG CCTC ACC GAGG TTTTTTTGCGCCTGA Rfer_3361 3732227 - 3733465 + | type II secretion system protein TERM 3611 3733742 - 3733800 + G 78 -16.2 -2.60496 | gap 2, opp_overlap 3733749, overlap 3733743 3733757 3733759 TGGAACATCGCCTGC CCAATT-ATT-TTGGTGCCGCCAGCGCC GCGCA GGCGCTGGCGGCACCAGCGGGCAGTTGG GTGTTTGACGCCGCC TERM 3612 3733791 - 3733749 - g 88 -19.1 -2.70932 | opp_overlap 3733743 3733742 3733757 3733759 TCGCCTGCCCAATTA TTTTGGTGCCGCCAGCGCC GCGCA GGCGCTGGCGGCACCAGCG GGCAGTTGGGTGTTT Rfer_3362 3733468 - 3733968 + | hypothetical protein TERM 3613 3734273 - 3734252 - f 74 -6.7 -4.2679 | overlap 3734253 GAATTTGTAGCAAAA CGTTTGAAA TCAT TTTCAAACA AGGTTTTTAAATATT Rfer_3363 3734305 - 3734724 + | methylation TERM 3614 3734816 - 3734830 + T 100 -7.1 -5.52909 | opp_overlap 3734809 3734816 GACAAAACCAAAAAA GCGAC CATGT GTCGC TTTTTTTCGATCTTC TERM 3615 3734830 - 3734816 - T 100 -7.1 -5.50313 | opp_overlap 3734816, overlap 3734809 GACAAAACCAAAAAA GCGAC CATGT GTCGC TTTTTTTCGATCTTC Rfer_3364 3735628 - 3735014 - | hypothetical protein TERM 3616 3735074 - 3735044 - G 74 -6 -4.57503 | overlap 3735046 3735072 GAACATAACAACAAA CAGGTAGATGCTGG CGG CCAGCAGCAACCAA CCCACCCGTTGCGCA TERM 3617 3735072 - 3735046 - G 78 -10.8 -3.87147 | overlap 3735044 ACATAACAACAAACA GGTAGATGCTGG CGG CCAGCAGCAACC AACCCACCCGTTGCG Rfer_3365 3737131 - 3735773 - | tRNA-i(6)A37 modification enzyme MiaB TERM 3618 3736231 - 3736257 + g 81 -8.6 -4.68724 | overlap 3736234 3736235 GCGCCATATCAGGCC GGATGGCGCGCA GCT TGCGCACCGTGC TTTTGTATTCCATGG Rfer_3366 3737670 - 3737266 - | hypothetical protein TERM 3619 3737687 - 3737673 - R 75 -11.4 -3.40522 | ACGCGCTGAGCACAA GGAGGC AAA GCCTCC TGAGAAAAAGGGGGG Rfer_3367 3738961 - 3737822 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3620 3738084 - 3738124 + g 73 -5.2 -4.62904 | overlap 3738090 TGCTTGCTGCTGTTG GCGTGGCTGCAGTCGACC ATCAA GGTCGCCGGCAGTTTGGC TTTTTCGAGGTCTTT TERM 3621 3738090 - 3738118 + g 78 -10.2 -3.99805 | overlap 3738084 CTGCTGTTGGCGTGG CTGCAGTCGACC ATCAA GGTCGCCGGCAG TTTGGCTTTTTCGAG TERM 3622 3739019 - 3739001 - R 100 -13.1 -5.68039 | opp_overlap 3739001 AAAGTCATAAAAAAA CCGCCGG GGTAG CCGGCGG TTTTTGGAAGATCAG TERM 3623 3739001 - 3739019 + r 100 -13.1 -4.58395 | opp_overlap 3739001 AAAGTCATAAAAAAA CCGCCGG GGTAG CCGGCGG TTTTTGGAAGATCAG Rfer_3368 3740699 - 3739155 - | hypothetical protein TERM 3624 3740425 - 3740377 - G 73 -5.2 -4.67607 | gap 1, overlap 3740373 GCGCCAACAAACAAA CCGGTGTGAGCCAGCCAGC TTGGACTGAGCC GCTGGC-GCCACTCACCGG CCAGACCCAGCGTGA Rfer_3369 3742168 - 3740696 - | peptidase U62, modulator of DNA gyrase TERM 3625 3744773 - 3744793 + G 74 -6.8 -4.42386 | opp_overlap 3744777, overlap 3744774 CTTTTGCAGACCCCA ACCACCAG AAGAA CTGGTGGC TTTTCTGCGTGCGCA Rfer_3370 3742233 - 3744815 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rfer_3371 3745998 - 3744844 - | rod shape-determining protein RodA TERM 3626 3745505 - 3745467 - G 85 -2.3 -5.41143 | gap 1, overlap 3745468 3745492 GACCGGCGAAAAAAA TGACCGACATGCCCGCCG ACAA CACCAGG-ATGGCGGTCC CCAAGTCCGGCTGCC TERM 3627 3745680 - 3745692 + g 83 -4.7 -5.14563 | opp_overlap 3745677 3745681, overlap 3745681 TGCCCACATCAAGCC AGCGC CGG GCGCC TTTTTTGGTGACACC Rfer_3372 3747877 - 3746021 - | putative signal transduction histidine kinase Rfer_3373 3748716 - 3747928 - | two component LuxR family transcriptional regulator TERM 3628 3748114 - 3748169 + g 75 -2.8 -4.89852 | opp_overlap 3748104 3748128 CAGAACTTCCTGTTC GCGTGGCGACAGCAGGCCGCGCTGCG ACTT CGCCTCACCGTCCTCAGTCGCTTCGC TTTTTATAGCTATAG TERM 3629 3748625 - 3748610 - G 100 -2.4 -5.75342 | overlap 3748611 3748612 CTGCCCGAAAAAAAA TCCCGC GTCT GCGGAT CATCCTCAACCACCA TERM 3630 3748808 - 3748790 - H 71 -6.1 -4.29508 | ACGCAGATCAAGAAA TTCAGAA CCCGT TTCTGAA TCGCCTGCTTCCCAA TERM 3631 3749392 - 3749355 - g 76 -10.6 -3.75169 | CAGGACTTCACGAAA GTGGCGGCACCGAC CGACGGCAGC ATCAGCGCCGCCAC GGTGGCGCGCATGGT Rfer_3374 3748842 - 3751205 + | hypothetical protein TERM 3632 3751261 - 3751289 + F 84 -6 -5.08824 | overlap 3751262 CTAGCCGAGCTCTCC CGCTGCAAAGTT CTCGA ACCTTTGCAGCA TTTTTTGAGTGCCCC TERM 3633 3751262 - 3751288 + F 74 -9.5 -3.64812 | overlap 3751261 TAGCCGAGCTCTCCC GCTGCAAAGTT CTCGA ACCTTTGCAGC ATTTTTTGAGTGCCC TERM 3634 3751300 - 3751327 + F 100 -19.8 -5.45726 | CAGCATTTTTTGAGT GCCCCGCGCGCC ACCC GGCCCGCGGGGC TTTTTTTCGCCTCTA TERM 3635 3751926 - 3751938 + G 70 -3.3 -4.59773 | overlap 3751927 TGACCAGCAACTGCC TGCCG TGA TGGCG TTTTTGGGGCTGAAC Rfer_3375 3751354 - 3751956 + | hypothetical protein Rfer_3376 3752821 - 3751991 - | urease accessory protein UreD Rfer_3377 3753550 - 3752852 - | ABC transporter related Rfer_3378 3754422 - 3753547 - | ABC transporter related TERM 3636 3753946 - 3753958 + g 70 -10.5 -3.42503 | opp_overlap 3753946 3753944 3753942 3753940 GCGGAAGAACAGAGA GGCGG TCA CCGCC TTGTCGGTCTTGAGG TERM 3637 3754343 - 3754325 - G 72 -13.8 -2.58579 | opp_overlap 3754324 3754340, overlap 3754324 GCAAGGCGCGAGAAG CCGGCGGC GCG GCCACCGG ATTCGGTCTTGCCGT Rfer_3379 3755522 - 3754419 - | inner-membrane translocator Rfer_3380 3757107 - 3755527 - | inner-membrane translocator TERM 3638 3756088 - 3756076 - G 70 -4.8 -4.56597 | TTGCGCGCCGAAAAA GCTG CGCAC CAGC TGCTGCAACATCAAA TERM 3639 3757184 - 3757147 - R 74 -11.3 -3.25823 | opp_overlap 3757149, overlap 3757149 GTTTGTTCACATGAA GAGCCCGAGGTCAGG CCGCAAAT CCTCACCTCGGGCTG TGTGACAGCGTCAAG TERM 3640 3757182 - 3757149 - R 87 -13.9 -3.19602 | opp_overlap 3757149, overlap 3757147 TTGTTCACATGAAGA GCCCGAGGTCAGG CCGCAAAT CCTCACCTCGGGC TGTGTGACAGCGTCA TERM 3641 3757149 - 3757182 + r 81 -13.9 -2.87564 | opp_overlap 3757149 3757147 TTGTTCACATGAAGA GCCCGAGGTCAGG CCGCAAAT CCTCACCTCGGGC TGTGTGACAGCGTCA Rfer_3381 3758472 - 3757213 - | twin-arginine translocation pathway signal TERM 3642 3758192 - 3758207 + g 81 -4.6 -5.00616 | GCGACCTTGTCTTGC CCCAGC AACT GCTTGG TTTTTTCGGCAAACA TERM 3643 3758395 - 3758373 - G 71 -7.7 -4.08394 | AGAGGCTGTGCAAAA CGCCGAC CTTGATGGT GTCGGCG GCAAAAGCTGGCAGG TERM 3644 3758508 - 3758498 - H 81 -4 -5.24129 | CCGGTTGATAAAAAA GAAA CCA TTTC GCTGCGCTGGGCCTG Rfer_3382 3758917 - 3760179 + | hypothetical protein Rfer_3383 3761008 - 3760487 - | ABC transporter related TERM 3645 3761339 - 3761361 + r 91 -14.2 -3.07113 | GCGCGTCAAGCTCAA TTCGTGACGC AGT GCGTCGCGAA TTGGATCAGATGATG Rfer_3384 3762053 - 3761367 - | hypothetical protein Rfer_3385 3762559 - 3762050 - | XRE family transcriptional regulator TERM 3646 3763474 - 3763464 - g 71 -8.2 -4.09243 | overlap 3763465 CACACTGGCGGAAAA GGGC TTT GCCC TGAACCAGGGCGACA Rfer_3386 3762955 - 3764694 + | gamma-glutamyltransferase Rfer_3387 3765402 - 3764761 - | negative transcriptional regulator Rfer_3388 3765887 - 3765399 - | OsmC-like protein TERM 3647 3765859 - 3765840 - G 79 -9.2 -4.15044 | GCGGTGGTCAACAAA GGCTGCGT TGTC ACGCTGCC AGATAACGGTGCTGG TERM 3648 3765960 - 3766001 + r 81 -14.3 -2.53581 | AGGACTCTATTATTG GGCCAGCCGCTCGGTCCGC AGAC GCGAGTCGACCGCCTGGCC TGCGTTGGCAGTGTC Rfer_3389 3766584 - 3766015 - | alkylhydroperoxidase Rfer_3390 3767529 - 3766690 - | AraC family transcriptional regulator TERM 3649 3766786 - 3766813 + g 85 -16.4 -3.18452 | gap 1, overlap 3766788 GAGCGCGCTGGCGCT GC-CGTAGCCGAC ATC GTCGGCTACGTGC TTCAGTTGCCGTCCT TERM 3650 3766788 - 3766810 + g 86 -17.8 -2.78891 | overlap 3766786 GCGCGCTGGCGCTGC CGTAGCCGAC ATC GTCGGCTACG TGCTTCAGTTGCCGT TERM 3651 3767496 - 3767481 - G 74 -6.8 -4.4009 | overlap 3767482 TTCCAGTGTAGAAAA CCCCTG CATG CAGGGA GAAGTGCGTCAGAAG TERM 3652 3768258 - 3768296 + G 76 -5.3 -4.63184 | gap 1, opp_overlap 3768267 AGCCGATGCGCTTAT TCAAATA-AACCCGACGC AGGA GCGTCGGGAAATATATGA TTTTTCAGATACCTT TERM 3653 3768286 - 3768267 - g 100 -15 -4.46112 | opp_overlap 3768258 GCTTATTCAAATAAA CCCGACGC AGGA GCGTCGGG AAATATATGATTTTT TERM 3654 3768906 - 3768927 + G 72 -2.9 -4.86731 | opp_overlap 3768909, overlap 3768908 3768909 3768911 TTTGAGCAGCATCAT CAACAGTGC CAAT GCACTGATC TTTTCTTTGGACCGG Rfer_3391 3767944 - 3771849 + | putative PAS/PAC sensor protein TERM 3655 3772375 - 3772353 - f 91 -14.8 -3.13743 | overlap 3772341 AAAGCGTAGAGTTAA GGCGCGGTGC GCC GCACCGCGTC AACGCCAGCCGAGCT Rfer_3392 3772399 - 3772668 + | thiamineS TERM 3656 3773558 - 3773604 + G 71 -5.7 -4.37092 | overlap 3773558 3773574 CATTCCCGTGGCGGG CC-GGATGGTCGTGACGCGCACC GAC GATG-GCGGCGCGTCCTTCCAGG TTTTGTCGGAGGGCT Rfer_3393 3772704 - 3773801 + | hypothetical protein Rfer_3394 3774621 - 3773809 - | hypothetical protein Rfer_3395 3778252 - 3774743 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3657 3775215 - 3775194 - G 74 -7.2 -4.37092 | overlap 3775208 ACCTGGTTCACAAAA TCCGCCTG ATGGAA CTGGCGGA CGCTGACGTTGACCG TERM 3658 3775849 - 3775877 + g 86 -15.3 -3.40403 | opp_overlap 3775872, overlap 3775873 3775875 AGCTTGCCAGCCGTT GGGCGACTTGCTG CAG CAGCAGATCGCCC TTGTCATGGCCAAGG Rfer_3396 3780909 - 3778264 - | TonB-dependent receptor TERM 3659 3780062 - 3780087 + g 77 -11.1 -3.66178 | overlap 3780063 GCCGCCGGGCGCCAC TGCAGCACCAC ATGG GCGGTGCTGCG TTTGCGATTGCCCAG Rfer_3397 3782262 - 3781276 - | two component LuxR family transcriptional regulator Rfer_3398 3785860 - 3782252 - | periplasmic sensor hybrid histidine kinase TERM 3660 3783386 - 3783357 - G 82 -12.9 -3.65812 | gap 1, overlap 3783362 GCGCCTTCAACATAA CGAAAGCTCAGGCC CTT GGCCTGCGC-TTCG AGCTCAAACAGGCTG TERM 3661 3783382 - 3783362 - G 89 -12.5 -4.08221 | overlap 3783357 TTCAACATAACGAAA GCTCAGGCC CTT GGCCTGCGC TTCGAGCTCAAACAG ureA 3785958 - 3786260 + | urease subunit gamma TERM 3662 3786556 - 3786576 + G 76 -12.5 -3.35679 | ATCGTCTACGGCTTT CGCGGCCTG ACG CAGGGCGCG TTGTAACTCGACCGC ureB 3786277 - 3786582 + | urease subunit beta TERM 3663 3787023 - 3787041 + G 78 -2.3 -5.07107 | TGTCAGTGATCCCAG CACGACG GATTA CGGTGTG TTTTTTGCGGGTTTC Rfer_3401 3786595 - 3787263 + | lysine exporter protein LysE/YggA TERM 3664 3787460 - 3787448 - g 71 -7.7 -4.07568 | TTGGCGGCGGCAAAA CCATC CGC GATGG CATGGCGCAGTCGCA TERM 3665 3788513 - 3788503 - g 74 -5.4 -4.57073 | GAGCCGGTGGAAAAA TTGC AGC GCAA CGACAACTACCGGGT ureC 3787288 - 3789033 + | urease subunit alpha Rfer_3403 3789039 - 3789497 + | GCN5-related N-acetyltransferase Rfer_3404 3789899 - 3789501 - | death-on-curing protein Rfer_3405 3790120 - 3789896 - | transcriptional regulator/antitoxin, MazE Rfer_3406 3790195 - 3790719 + | UreE urease accessory-like TERM 3666 3791310 - 3791330 + G 74 -3.8 -4.86001 | overlap 3791307 TCACGCGCTCACCCT GCCGGACG ACGCG CGCCAGGC TTTTTCTCCCATGCT Rfer_3407 3790723 - 3791400 + | urease accessory protein UreF Rfer_3408 3791451 - 3792140 + | urease accessory protein UreG Rfer_3409 3794175 - 3793348 - | peptidase T2, asparaginase 2 Rfer_3410 3794660 - 3794172 - | protein tyrosine phosphatase TERM 3667 3795957 - 3795969 + G 74 -3.4 -4.8543 | overlap 3795956 CTTACAGCATAAGCG TGAG CAGCT CTCA TTTTTATACCGCTTG TERM 3668 3796864 - 3796836 - g 76 -8.7 -4.10657 | overlap 3796837 CGACAGCCTTGAAAA TGGCAGCAACCCG GCC CAGGCCGCCGCCG ACAACCCTGCCCCGT TERM 3669 3796863 - 3796837 - g 72 -12.2 -3.06073 | overlap 3796836 GACAGCCTTGAAAAT GGCAGCAACCCG GCC CAGGCCGCCGCC GACAACCCTGCCCCG Rfer_3411 3794794 - 3796881 + | ribonuclease II TERM 3670 3797119 - 3797077 - g 72 -12.5 -3.05844 | opp_overlap 3797099, overlap 3797055 3797052 TTGCCCAGGCCAACA TGGCCGGTGGCGGCGACGC CGAGC GCGGCCGCGCCACCAGCCC GCTGCCGCCCGCGCT TERM 3671 3797258 - 3797230 - g 71 -7.9 -4.13767 | overlap 3797233 TGGCTCAGGTGAAAA GCATGCTGGCGGC GCT GCCGCCCGCCGAC CCGCGCCAGGCCAGC TERM 3672 3797618 - 3797633 + G 84 -11.8 -4.07885 | CATTACCCGCAGTGC GGCGCC GTTT GGCGCC TTTTCCGCCGCCATG Rfer_3412 3796878 - 3797735 + | TonB-like TERM 3673 3798324 - 3798334 + G 74 -6.8 -4.37502 | CATGATCTGCGCGGA CTGC AGG GCAG TTTTGATGTGGTCAT Rfer_3413 3797736 - 3798611 + | shikimate 5-dehydrogenase lpxC 3798640 - 3799563 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Rfer_3415 3799578 - 3799754 + | hypothetical protein Rfer_3416 3800557 - 3799808 - | methyltransferase TERM 3674 3800111 - 3800099 - G 85 -3.3 -5.31275 | opp_overlap 3800110, overlap 3800102 GTGCAGCAGAAAAAA CACCA CCA CGGCG TCACGGCTGGCGTCT Rfer_3417 3801262 - 3800714 - | crossover junction endodeoxyribonuclease RuvC TERM 3675 3801493 - 3801463 - R 100 -15.5 -4.19258 | gap 1 AGAGTCCATTGAAAA CGCCCCGC-AAGCA CAAC TGCCTGGCGGGGCG CAGATCACCTCAAGC Rfer_3418 3803361 - 3801526 - | hypothetical protein TERM 3676 3802702 - 3802726 + g 76 -10 -3.70773 | overlap 3802703 CGCGGCATTGTCTGT CGCCATGACG GCCAG CGTCATGGCA TTCTTGAGTGTGGCG TERM 3677 3802703 - 3802725 + g 73 -13.5 -2.82142 | overlap 3802702 GCGGCATTGTCTGTC GCCATGACG GCCAG CGTCATGGC ATTCTTGAGTGTGGC TERM 3678 3802798 - 3802785 - G 71 -8.1 -4.12188 | TGACCAGGTCCAAAA CGGCA TCCA TGCCG GAGTGATCAGCCGCG Rfer_3419 3804410 - 3803628 - | monofunctional biosynthetic peptidoglycan transglycosylase TERM 3679 3804028 - 3804038 + g 83 -2.4 -5.28176 | overlap 3804027 3804029 GGCTTGCTTGTCGTC GGCG CTG CGGC TTTTTTCTGGGTCGC TERM 3680 3804382 - 3804349 - G 70 -4.5 -4.57209 | gap 1, overlap 3804351 3804353 ATACGAACGACAAAA TAG-AGTTGCAGCGCC AGC AGCGCCGCCACCACCA GACCGAGCCAACGCA TERM 3681 3804377 - 3804353 - G 70 -9.9 -3.51909 | overlap 3804351 3804349 GAACGACAAAATAGA GTTGCAGCGCC AGC AGCGCCGCCAC CACCAGACCGAGCCA Rfer_3420 3805742 - 3804489 - | cell division protein FtsZ TERM 3682 3805157 - 3805167 + g 79 -8.2 -4.57569 | overlap 3805155 TGATTTCGGCAATGC CGCC GAC GGCG TTTTTCAGCACATCG TERM 3683 3805417 - 3805397 - G 73 -13.9 -2.72991 | CCACACGCGCAATCA CCGGCGCCG CAC CGGTGCCGG TGCCGCCGCCCATCC Rfer_3421 3807119 - 3805890 - | cell division protein FtsA TERM 3684 3805977 - 3805991 + g 82 -12.8 -3.61398 | CTTGAAGCCGCGCAG GCGCGC CAT GCGCGC TTCTTCGAGCAGGCC TERM 3685 3807199 - 3807162 - R 81 -11.9 -3.53224 | gap 1 TATTTCTTGGGTAAA GCCA-CCGCCAGCGTGCT GAC ACCGCGCAGGCGGATGGC ATAGCCGTCCTGATG Rfer_3422 3807931 - 3807146 - | cell division protein FtsQ Rfer_3423 3808968 - 3807928 - | D-alanine--D-alanine ligase TERM 3686 3808148 - 3808105 - G 72 -2.4 -4.72986 | gap 3, overlap 3808106 3808107 GATTTCCAGCAAAAA GGGCGCGCGTGTG-CG-GGCG TCGAT CATCACGTCA-ACGCGGGCCC AGCCCCGGCATCCCA murC 3810398 - 3808965 - | UDP-N-acetylmuramate--L-alanine ligase TERM 3687 3810553 - 3810563 + r 70 -3.2 -4.73105 | TGCCAAACTGGTTAT GAGC CGC GTTC TTGTTTTTTATGCGT Rfer_3425 3812205 - 3811039 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 3688 3811082 - 3811099 + g 70 -4.1 -4.62069 | ACGATCTTGTGTGTA GCGTCAA GTTT TTGAAGC TTTTTGGCCTCCAGC Rfer_3426 3813437 - 3812202 - | cell cycle protein murD 3814954 - 3813434 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Rfer_3428 3816135 - 3814957 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 3689 3815192 - 3815172 - G 84 -5.3 -4.91109 | overlap 3815173 CCTCCACCACAAAAA CGCCGCCCA TGA TGGCCAGCA CGATTTCCTGGCGCA Rfer_3429 3817567 - 3816125 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase Rfer_3430 3819845 - 3818229 - | UDP-N-acetylmuramyl-tripeptide synthetases Rfer_3431 3821587 - 3819845 - | peptidoglycan glycosyltransferase Rfer_3432 3821928 - 3821584 - | cell division protein, FtsL -like TERM 3690 3821748 - 3821766 + g 73 -4.4 -4.59773 | overlap 3821733 3821749 GGCGCTCTACACGCG AGGGCGTG GCC TGCGCCCG TTTTTCCACCTGCAG Rfer_3433 3822854 - 3821925 - | methyltransferase Rfer_3434 3823367 - 3822876 - | cell division protein MraZ TERM 3691 3823363 - 3823341 - G 71 -5.7 -4.42464 | gap 1, opp_overlap 3823346, overlap 3823346 AATTTTGCAAAGAAA TGA-AAGTGC AAAA GCACTTTTCA CCACTTAATTGCACA hslU 3824919 - 3823597 - | ATP-dependent protease ATP-binding subunit TERM 3692 3824287 - 3824299 + g 71 -6.2 -4.35116 | AGGGATTTTGAGCTT GCGC GTCTG GCGC TTTTGCTGTCCCATC TERM 3693 3824561 - 3824574 + g 84 -3.7 -5.21709 | overlap 3824560 3824561 TCGGCCGCGTCTTCC GCGCG TGAG CGCAC TTTTTTCATCTCGGC Rfer_3436 3825464 - 3824916 - | ATP-dependent protease peptidase subunit Rfer_3437 3827291 - 3825483 - | hypothetical protein TERM 3694 3826481 - 3826462 - G 74 -5.6 -4.4784 | gap 1 TAAAGGTCAAACAAA GCCG-CTGC CCA GCCGTCGGC CGAATCCGGATTAAC TERM 3695 3827048 - 3827035 - G 77 -3.7 -5.00616 | CTGGTCTGGAAAAAA GAGGG GCGG CCCGC GAGCTCCGGACTCAA Rfer_3438 3828621 - 3827332 - | TraR/DksA family transcriptional regulator Rfer_3439 3829708 - 3828653 - | cobalamin synthesis protein, P47K TERM 3696 3828704 - 3828688 - G 78 -5.1 -4.82901 | TGCCTTGCAGAAAAA TGTCTTG CGG CAAGTCA ATGCCGATGAACACC TERM 3697 3829163 - 3829143 - G 71 -8.2 -4.07568 | opp_overlap 3829137, overlap 3829144 GCCGCCTCGCCAAAA TGCACCGC CTTTT GCGGTGCG CGTGGGTTCATGTGC Rfer_3440 3830954 - 3829773 - | PUA Rfer_3441 3831346 - 3831038 - | hypothetical protein Rfer_3442 3832394 - 3831381 - | phage integrase TERM 3698 3831707 - 3831672 - G 73 -8.9 -3.85817 | opp_overlap 3831693, overlap 3831674 ATTGCGTCCCATAAA CAGC-GCGGCCTGGGCG TTGC CGCCC-GGCCCCTGCAG ACCCGGCTTGGCTTG TERM 3699 3831705 - 3831674 - G 70 -10.1 -3.51934 | opp_overlap 3831693, overlap 3831672 TGCGTCCCATAAACA GC-GCGGCCTGGGCG TTGC CGCCC-GGCCCCTGC AGACCCGGCTTGGCT TERM 3700 3832504 - 3832514 + r 70 -3.2 -4.80853 | overlap 3832497 3832495 GACTGACCCGGCTCT GAGC AGC GTTC TTGTTTTTTTGGCGT Rfer_3443 3833655 - 3832969 - | hypothetical protein TERM 3701 3833174 - 3833130 - G 84 -10.1 -4.19238 | gap 3 TGCGCAAGGGCAAAA TCGCCAGC-GACGCGGCGG-CC TGCG GGTCCGCCA-GCCAGCTGACGA CTTCGAAACCGGTGT Rfer_3444 3834527 - 3833652 - | diaminopimelate epimerase Rfer_3445 3834853 - 3834539 - | hypothetical protein Rfer_3446 3834954 - 3836642 + | beta-lactamase-like Rfer_3447 3836635 - 3836907 + | hypothetical protein Rfer_3449 3839053 - 3837155 - | methyl-accepting chemotaxis sensory transducer Rfer_3450 3839198 - 3839548 + | hypothetical protein Rfer_3452 3841558 - 3840374 - | hypothetical protein TERM 3702 3841419 - 3841408 - G 81 -5.8 -4.75776 | AACGCAACGCAAAAA CGCT GGCC AGCG TAGCTATCACCACCA Rfer_3453 3843321 - 3841984 - | two component, sigma54 specific, Fis family transcriptional regulator Rfer_3454 3845189 - 3843318 - | histidine kinase TERM 3703 3844005 - 3843986 - G 77 -15 -2.78816 | opp_overlap 3843970, overlap 3843998 3843999 CGATGCCGGAGGAGA GCTGGCCG ATAA CGGCCAGC TTGCCGGCCTGGACC TERM 3704 3844801 - 3844789 - G 71 -5.5 -4.31412 | AAATAGGGACGAAAA GAGAG ATC CTCCC CAAGAAAGCTGTCGG Rfer_3455 3846570 - 3845269 - | sodium:dicarboxylate symporter TERM 3705 3845698 - 3845687 - G 85 -7.2 -4.77567 | opp_overlap 3845685 3845687 AGGGGCAGAACAAAA CCGG TGAC CCGG TCTTTGACGCCGAAC TERM 3706 3846355 - 3846310 - G 86 -12.5 -3.86346 | gap 1, overlap 3846313 GGACGCGCTGACAAA CCAGCCCAAGGCCTTGGCGCCG ATG CGGC-CCACGGCCTTGGCATCG CCCATGCCTGCCAGG TERM 3707 3846351 - 3846313 - G 83 -16.1 -3.00946 | gap 2, overlap 3846310 CGCGCTGACAAACCA GCCCAAGGCCTTGGCGCCG ATG CGGC-CCACGGCCTTG-GC ATCGCCCATGCCTGC TERM 3708 3848122 - 3848084 - g 76 -10.8 -3.78953 | opp_overlap 3848119, overlap 3848085 AGCTGGATCAGGAAA CCGGCCCCGCCAATGGCG CAC CGCTACTGGCGCGGCGCG CGCACTACGCGCGTT TERM 3709 3848122 - 3848085 - g 75 -14.1 -2.87051 | gap 1, opp_overlap 3848119, overlap 3848084 GCTGGATCAGGAAAC CG-GCCCCGCCAATGGCG CAC CGCTACTGGCGCGGCGCG CGCACTACGCGCGTT Rfer_3456 3847537 - 3848355 + | hypothetical protein TERM 3710 3848959 - 3848928 - g 85 -15.8 -3.16564 | overlap 3848931 CCTGCAGCGCATCAA CCAGGGGCTGGCGG TGGA CGGCCAGCCCCTGC CAGCGGTCAAAGTCA TERM 3711 3848956 - 3848931 - g 79 -16.1 -2.78547 | overlap 3848928 GCAGCGCATCAACCA GGGGCTGGCGG TGGA CGGCCAGCCCC TGCCAGCGGTCAAAG Rfer_3457 3848383 - 3849171 + | RNA-binding S4 Rfer_3458 3850067 - 3849168 - | LysR family transcriptional regulator TERM 3712 3850133 - 3850147 + H 84 -5.7 -5.055 | overlap 3850120 CGTGTTCGCCATTTC GCGAA CATTA TTCGC TTTTTTCGAAGTTAA TERM 3713 3850553 - 3850527 - g 70 -5 -4.46926 | overlap 3850549 GATCGCAGCACAAAA GACGCCGTTCGC CAC GCGAAGACCGCC GCAAGCAGCGCGGGC Rfer_3459 3850251 - 3850799 + | BadM/Rrf2 family transcriptional regulator Rfer_3460 3851321 - 3852238 + | cysteine synthases TERM 3714 3852734 - 3852721 - g 93 -8.1 -5.0133 | overlap 3852722 GAGCGCGGTAAAAAA GTGCG CGAG CGCAC CCAGGACACCTGGGG Rfer_3461 3852280 - 3854052 + | FAD dependent oxidoreductase TERM 3715 3854081 - 3854066 - T 74 -2.4 -5.00642 | GAATCTATATAAAAA CAGGCG CTAG CCCCCG TCAATCAGGCACAAT Rfer_3462 3854799 - 3854170 - | lysine exporter protein LysE/YggA Rfer_3463 3855701 - 3854826 - | heat shock protein HtpX TERM 3716 3855069 - 3855051 - G 70 -12.4 -2.83822 | overlap 3855048 GTGACGGGAGAACCA GGCCACCA CGA TGGCGGCC GCAAAACCGAGCACG Rfer_3464 3856946 - 3855903 - | dihydroorotase TERM 3717 3856493 - 3856479 - G 72 -11.4 -3.39895 | opp_overlap 3856481 CTGCGTATCAATGAA GACCGC CTC GCGGTC AAACAGGTCGATCTC Rfer_3465 3857981 - 3856983 - | LysR family transcriptional regulator TERM 3718 3857274 - 3857244 - G 78 -4.7 -4.81851 | gap 1, overlap 3857236 ACTGAAAGGCAAAAA GGCAATGCCA-TGG CCTT CCAGCGCCATCGCC TTCAGGCCTTCCGCC TERM 3719 3857729 - 3857752 + g 70 -10.2 -3.53811 | gap 1, opp_overlap 3857708 GCCCGGCAGAGGCAT GCCCGCGCAGC ATG GC-GCGCGTGC TTTGCAGAGCCTGCA Rfer_3466 3858512 - 3858111 - | hypothetical protein Rfer_3467 3858606 - 3859577 + | AraC family transcriptional regulator Rfer_3468 3859640 - 3860029 + | hypothetical protein Rfer_3469 3861112 - 3860084 - | aldo/keto reductase TERM 3720 3861277 - 3861306 + H 100 -9.2 -5.35222 | opp_overlap 3861275 3861280, overlap 3861280 ACTGCGCACCTAAGC GAAGCCCCGCTG CAAGTT CTGCGGGGCTTA TTTTTTGTCCGTTTT TERM 3721 3861280 - 3861303 + H 100 -10.9 -4.73105 | opp_overlap 3861275 3861280, overlap 3861277 GCGCACCTAAGCGAA GCCCCGCTG CAAGTT CTGCGGGGC TTATTTTTTGTCCGT TERM 3722 3861303 - 3861280 - H 71 -10.9 -3.19192 | opp_overlap 3861280 3861277, overlap 3861275 GCGCACCTAAGCGAA GCCCCGCTG CAAGTT CTGCGGGGC TTATTTTTTGTCCGT Rfer_3470 3861356 - 3861601 + | hypothetical protein TERM 3723 3862511 - 3862521 + G 88 -6.8 -4.94962 | opp_overlap 3862503, overlap 3862491 3862503 CATGAAAGCGGGTGC CGGT TTT ACCG TTTTCTTTGCCTTGT Rfer_3471 3861582 - 3863438 + | diguanylate cyclase Rfer_3472 3864105 - 3863500 - | hypothetical protein TERM 3724 3863663 - 3863653 - G 73 -4.6 -4.72272 | opp_overlap 3863660 GTGCTGCATCAAAAA CAGC TCG GCCG ACAGCGTGAAGGCTT Rfer_3473 3864839 - 3864186 - | regulator of competence-specific genes TERM 3725 3864314 - 3864283 - G 73 -10 -3.60098 | ACTTGCCAGGGCAAA CCGCTCAGGGCGCC CTCC AGCGCCCACAGCAG ATTCAGGCTCGCAGA TERM 3726 3865003 - 3864982 - H 87 -2.2 -5.67063 | gap 1, overlap 3864983 CTGACCACAAAAAAA TCGCA-GGG CTTGT CCCATGCGG TGACTCTGCGTAGGC Rfer_3474 3865169 - 3865918 + | hypothetical protein TERM 3727 3866096 - 3866079 - f 75 -6.3 -4.57073 | CAGGTGGGTCAAAAA CTTGTCG GTGC CAACAAG CGGTCCCATCGACGC TERM 3728 3866523 - 3866505 - g 79 -8.8 -4.20696 | opp_overlap 3866514 3866515, overlap 3866506 CCATCAATGTCAAAA CCAGCCTC GGC GAGGCTGC CCTGCGTTTCCGGGA TERM 3729 3866522 - 3866506 - g 72 -12.3 -3.11936 | opp_overlap 3866514 3866515, overlap 3866505 CATCAATGTCAAAAC CAGCCTC GGC GAGGCTG CCCTGCGTTTCCGGG Rfer_3475 3866249 - 3867964 + | diguanylate cyclase with PAS/PAC sensor Rfer_3476 3868312 - 3868058 - | 17 kDa surface antigen Rfer_3477 3868908 - 3869720 + | 5'-3' exonuclease Rfer_3478 3870328 - 3870026 - | hypothetical protein TERM 3730 3870913 - 3870900 - R 70 -6.7 -4.2074 | CCTCCAAGATATAAA GATGC TCGG GCATC GGTCGTGGAAAGAAT Rfer_3479 3871854 - 3870934 - | LysR family transcriptional regulator TERM 3731 3871292 - 3871309 + g 74 -6.3 -4.56597 | gap 1 TATTGAGCCAGTTCC GAC-CAGG TTA CCTGCGTC TTTTTGGCCAGGGGG TERM 3732 3873390 - 3873364 - g 74 -3.8 -4.83169 | gap 2, overlap 3873366 3873369 AGCGTGGCAGAAAAA GATGAGGCGGCA TCGCT TGCCGCC--ATC AAGGCCTCAGGCAAG TERM 3733 3873391 - 3873366 - g 80 -9.8 -4.03995 | gap 1, overlap 3873364 3873369 CGTGGCAGAAAAAGA TGA-GGCGGCA TCGCT TGCCGCCATCA AGGCCTCAGGCAAGT Rfer_3481 3872509 - 3873540 + | TRAP dicarboxylate transporter, DctP subunit TERM 3734 3873677 - 3873691 + G 71 -5.6 -4.40561 | TCGCCTTCCTCATTG CCGGTG CCA CGCTGG TTATTTTTGCAGCCG Rfer_3482 3873628 - 3874287 + | tripartite ATP-independent periplasmic transporter DctQ Rfer_3483 3874290 - 3875573 + | TRAP dicarboxylate transporter- DctM subunit TERM 3735 3875754 - 3875788 + G 70 -3.5 -4.60487 | gap 1, overlap 3875757 3875763 3875767 CACGACCTGAAGCGG GCACA-CCGCTGCCGC CGCT GTGGCATTGGCTGTAC TTTTTGCCGCTGGTC TERM 3736 3875844 - 3875896 + G 72 -11.2 -3.36823 | gap 1, overlap 3875834 GTCATGCCAAGCGCG GTGGCTTCTTGCCCCCG-GTGCCGT TGCC ACGGCGCATGTGGGCGGGTAGCCAA TTCACTTTTCACAAG TERM 3737 3875986 - 3875972 - g 70 -3.4 -4.58283 | opp_overlap 3875973, overlap 3875973 GAAGTGTCTGAAAAA TCCGGC CGC ACCGGC AAGTTGGTATTTGTC Rfer_3484 3875639 - 3876484 + | hypothetical protein TERM 3738 3876644 - 3876664 + G 89 -12.5 -4.03234 | opp_overlap 3876640 GGCTACGACAACCGG GTGCGCGGC ATA GCCTCGCAC TTTGTCTGGACCAAC TERM 3739 3876930 - 3876902 - g 84 -3.1 -5.252 | gap 1 TACCGCGACAAAAAA GCCTACGACCTG CTGATC CAGAGCG-AGGC CGGTTTTGTGTCCGT Rfer_3485 3876494 - 3877675 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 3740 3877718 - 3877745 + G 71 -7.6 -4.07687 | overlap 3877719 AGCCCCTCACCTACC TGTTTGTGCCGG GCAA CCGGCCCGAGCG TTTTGCCAAGGCCCT Rfer_3486 3877681 - 3878520 + | HpcH/HpaI aldolase Rfer_3487 3878546 - 3879898 + | fumarate lyase Rfer_3488 3879905 - 3881365 + | tricarballylate dehydrogenase TERM 3741 3881460 - 3881480 + G 71 -7.6 -4.11371 | gap 1 ATGCAAATCTGCAAC GCCTGTCGC TACT GCGA-AGGC TTTTGCGCCGTGTTC TERM 3742 3881734 - 3881750 + G 72 -2.9 -4.77036 | overlap 3881722 3881721 TGTCACTGGCCCTGG CGGCG GGGCTGG CGCTG TTTTTGCTGCTGGCC Rfer_3489 3881358 - 3882524 + | citrate utilization protein B Rfer_3490 3882549 - 3882737 + | hypothetical protein Rfer_3491 3883795 - 3882818 - | LysR family transcriptional regulator TERM 3743 3883391 - 3883427 + g 70 -3.8 -4.62069 | gap 3 AAGAATCTGGACTGC CACGGGCGTGCTG-GCG GTAATG CGCACAGT--GCCCGTG TTTTTGGCCTGGGCG Rfer_3492 3883836 - 3884843 + | NAD-dependent epimerase/dehydratase Rfer_3493 3886844 - 3885018 - | ABC transporter related TERM 3744 3887194 - 3887206 + G 77 -4.1 -5.0133 | GCCGGTGCGCGTGGG CGATA TCC TGTCG TTTTTTGCCAAGCTG Rfer_3494 3886940 - 3887380 + | thioesterase superfamily protein Rfer_3495 3887588 - 3888139 + | NADPH-dependent FMN reductase TERM 3745 3888699 - 3888712 + G 100 -2.4 -5.75342 | overlap 3888679 GGCTTCATCGGCAAG TGCA GCCCGG TGCA TTTTTTTTGGGGCAG Rfer_3496 3888168 - 3889115 + | hypothetical protein Rfer_3498 3890179 - 3889364 - | enoyl-CoA hydratase TERM 3746 3889501 - 3889521 + g 83 -4.7 -5.03314 | overlap 3889502 ACTGGGCGTAGGCGC TCATGCG ATCGGCC CGCATGG TTTTTTGCGGGTAGC TERM 3747 3889931 - 3889917 - G 79 -7.8 -4.56597 | opp_overlap 3889918, overlap 3889921 TCGTCTGGTGAAAAA GCTAGC CCC GCCAGC GGGCCCGGTTGATTG TERM 3748 3890087 - 3890066 - G 100 -12.3 -4.29929 | gap 1 ATCAAATGCAAGAAA GGCCGCGTGC AAC GCACG-GGCC GTTGCAGCGTCCACG TERM 3749 3890186 - 3890197 + H 78 -2.2 -5.14477 | GTTGGTCATGGCCCA CATG ATGA CGTG TTTTTTGCGTCTGTC TERM 3750 3890995 - 3891012 + G 73 -9.8 -3.63968 | CTCAAGGCTTTTCCG GCCGCC GTGGTG GGCGGC TTTGGCAGTTTGCCG Rfer_3499 3890314 - 3891189 + | inner-membrane translocator Rfer_3500 3891186 - 3892262 + | inner-membrane translocator Rfer_3501 3892259 - 3893107 + | ABC transporter related Rfer_3502 3893104 - 3893901 + | ABC transporter related Rfer_3503 3893906 - 3895762 + | AMP-dependent synthetase and ligase Rfer_3504 3895881 - 3897059 + | extracellular ligand-binding receptor TERM 3751 3897098 - 3897081 - T 76 -12.7 -2.72471 | opp_overlap 3897081, overlap 3897080 3897077 3897063 CCCCCATTAGACAAT GGCCACC TTCC GGTGGCC TTGTCTCTGGACGCA TERM 3752 3897081 - 3897098 + T 85 -12.7 -3.58726 | opp_overlap 3897081 3897080 3897077 3897063 CCCCCATTAGACAAT GGCCACC TTCC GGTGGCC TTGTCTCTGGACGCA Rfer_3505 3897609 - 3897121 - | hypothetical protein Rfer_3506 3898786 - 3897620 - | acyl-CoA dehydrogenase-like Rfer_3507 3899720 - 3898836 - | short-chain dehydrogenase/reductase SDR TERM 3753 3899752 - 3899742 - R 77 -4.6 -4.85782 | opp_overlap 3899745, overlap 3899746 TCCTTCAAAAACAAA GCCA TGG CGGC ATCGGCCAATTCATC Rfer_3508 3900403 - 3899720 - | TetR family transcriptional regulator TERM 3754 3899769 - 3899779 + g 100 -2.4 -5.86061 | TCGGCCAATTCATCC AGCG ACG CGCC TTTTTTTTCATCGAA TERM 3755 3900190 - 3900180 - G 75 -2.4 -4.91712 | opp_overlap 3900187 3900188 TTGAAGTGATAAAAA GGCG AGC CGCT GTGCATGCCGACGGC Rfer_3509 3902270 - 3900537 - | thiamine pyrophosphate enzyme-like TPP binding protein TERM 3756 3901182 - 3901164 - G 77 -3.7 -5.0133 | opp_overlap 3901172, overlap 3901165 CAGCGCGTCAAAAAA GCGCGCC GGGTT GACGCGA CCTTGGCTGTCGTGG Rfer_3510 3903937 - 3902312 - | fumarate reductase/succinate dehydrogenase flavoprotein-like TERM 3757 3902579 - 3902612 + g 76 -15.3 -2.52623 | gap 1, opp_overlap 3902571, overlap 3902578 3902576 GAAAGGACCTGCCCC GCGCGCCTGC-AGCGG TGC CGGCTTGCAGGTGCGC ATCTTGTCAGGCCCC TERM 3758 3904395 - 3904373 - g 75 -7.7 -4.21194 | opp_overlap 3904370 3904373 3904373, overlap 3904384 GGGCATTACTGAAAA TGGCCAGGA AGCCA TCTTGGCCA TGCTTGAATCGCCAC Rfer_3511 3904155 - 3904856 + | Crp/FNR family transcriptional regulator Rfer_3512 3905749 - 3904985 - | enoyl-CoA hydratase TERM 3759 3905577 - 3905550 - G 80 -3.4 -5.08824 | overlap 3905552 TGCGCATGCAAAAAA TCTCCAATGTCG TTGC CGGCACTGAAAA TCGTCTCGTGCCCTT TERM 3760 3905614 - 3905578 - G 71 -7.2 -4.18018 | overlap 3905579 3905603 TGCCGGCACTGAAAA TCGTCTCGTGCCCTTG AAAGA CAAGGGCACGAAGCTG CGCGTCGGCTTGCGC Rfer_3513 3906665 - 3905814 - | hypothetical protein TERM 3761 3906010 - 3905987 - G 73 -5.2 -4.72007 | gap 1 CGGCATGAAAATAAA CCGTCAGCGAC ACC GT-GCCGGCGG GCACCAGCAGCGCCC Rfer_3514 3908273 - 3907083 - | BNR repeat-containing protein TERM 3762 3908470 - 3908482 + H 75 -6.3 -4.54821 | ACGACTTTCTTCGGA CTTGA CGC TCAAG TTTTGTCGTTAACGT TERM 3763 3908567 - 3908552 - H 75 -6.8 -4.42386 | overlap 3908553 CTTGGACCCACAAAA GGCCAG CCGT CTGACC AGATCTCATCTTCAA TERM 3764 3909023 - 3908995 - H 70 -8.8 -3.64162 | opp_overlap 3908988 3908996, overlap 3908996 AGGAAGCATCTGAAA GGGTCAGGGTTC GTTTT GAGCCCTGACCT TTCTTGTTGTGGCCG TERM 3765 3908996 - 3909022 + H 100 -15.2 -4.51812 | opp_overlap 3908995 3908996, overlap 3908988 GGAAGCATCTGAAAG GGTCAGGGTTCG TTT TGAGCCCTGACC TTTCTTGTTGTGGCC TERM 3766 3909022 - 3908996 - H 72 -12.3 -2.78015 | opp_overlap 3908988 3908996, overlap 3908995 GGAAGCATCTGAAAG GGTCAGGGTTC GTTTT GAGCCCTGACC TTTCTTGTTGTGGCC TERM 3767 3909264 - 3909254 - g 75 -2.4 -4.98857 | AGCGAAGTACAAAAA CGCG CAG CGAG AGCAATGGAACAAGG Rfer_3515 3909210 - 3910073 + | UbiE/COQ5 methyltransferase TERM 3768 3910287 - 3910270 - T 100 -8.4 -5.55664 | opp_overlap 3910270 TGACGACGAAAAAAA GGCCAC TGGTGC GTGGCC TTCTTCATCTGACTT TERM 3769 3910270 - 3910287 + T 71 -8.4 -3.78436 | opp_overlap 3910270 TGACGACGAAAAAAA GGCCAC TGGTGC GTGGCC TTCTTCATCTGACTT Rfer_3516 3911504 - 3910308 - | acetyl-CoA acetyltransferase TERM 3770 3910675 - 3910700 + g 70 -3.2 -4.65895 | overlap 3910677 ACGAAACGTGCCAGC GGTGTCAAGC CAAACT GCTTGACCGC TTTTTCACTGGCCAA TERM 3771 3910829 - 3910857 + g 75 -2.3 -4.87665 | overlap 3910831 GCGAGGTGTCCGGGC GGGCGCCCTCA TCCACAC TGACGGTGCGC TTTTTCTCGATCACC TERM 3772 3911475 - 3911437 - G 75 -2.1 -5.00884 | gap 1, overlap 3911438 3911439 ATGTTGCGGAAAAAA CCCCGGTGCGAGC-GCCC GATG GGGCTGCGCGTGGCGGCG ACGATATAGGCTTCT Rfer_3517 3913924 - 3911525 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 3773 3912930 - 3912940 + g 83 -4.6 -5.03314 | overlap 3912923 AGCAATTTCAGCCGT TCGG CGG CCGG TTTTTTCAGCATGCG Rfer_3518 3914450 - 3914016 - | hypothetical protein TERM 3774 3914069 - 3914055 - G 81 -4.9 -4.96848 | opp_overlap 3914065 GGTTCGATAGAAAAA CGCGA TGTAG CCGCG CACCTGAAGCTGCTT Rfer_3519 3916263 - 3914467 - | acyl-CoA dehydrogenase-like TERM 3775 3915804 - 3915817 + g 76 -6.7 -4.43681 | CACTGGTCATCTTGT GCAGA TAGG TCTGC TTTTGCTCTTCAGTG Rfer_3520 3916976 - 3916266 - | TetR family transcriptional regulator TERM 3776 3916679 - 3916653 - G 70 -10.8 -3.55761 | opp_overlap 3916663 3916664 CATCCAGTTGGCAAA CAGGGCCCGC ACCCGCG GCAGGCCCCG GGCTTCATCCATGGC slmA 3917875 - 3917153 - | nucleoid occlusion protein TERM 3777 3917408 - 3917435 + g 74 -4 -4.82901 | opp_overlap 3917361 3917398, overlap 3917409 GAACACCAGCGCATC ACCCACCATGAC GCGG GTCATGCCGGGA TTTTTCTCGGCGAAC Rfer_3522 3919394 - 3917937 - | periplasmic sensor signal transduction histidine kinase TERM 3778 3918533 - 3918543 + g 70 -3.2 -4.59984 | CTTTATTCACGGGGG CTAG AGG CTGG TTTTGTATAAATTTT TERM 3779 3919367 - 3919344 - G 76 -10.2 -3.72324 | overlap 3919346 CAGGGGCACCAATAA CAGCAGCAGC AAGC GCCGCTGCAG GCCGGAGGACATGGT TERM 3780 3919365 - 3919346 - G 74 -11.4 -3.44284 | overlap 3919344 GGGGCACCAATAACA GCAGCAGC AAGC GCCGCTGC AGGCCGGAGGACATG Rfer_3523 3920105 - 3919398 - | two component transcriptional regulator Rfer_3524 3921144 - 3920254 - | acetylglutamate kinase TERM 3781 3920763 - 3920791 + g 74 -12.3 -3.14132 | CGCCGTCACGCCCGG TCAGGCCCACGGC CTT GCCGCCGGCCTGG TTGATCAGACCCACG Rfer_3525 3921524 - 3921153 - | histone-like nucleoid-structuring protein H-NS Rfer_3526 3923897 - 3921900 - | short chain dehydrogenase TERM 3782 3922456 - 3922435 - G 75 -8.1 -4.22214 | gap 1 AGGCAGCCAAAATAA TTGAGCTGCA TGG TGC-GCTCAA AGTCATGAAAACGAT TERM 3783 3923654 - 3923666 + g 75 -7.7 -4.28115 | opp_overlap 3923654 3923653 CCAGATGGTAGAAAT GGTCA ATC TGACC TTTGATTTGTTTGAT TERM 3784 3924548 - 3924524 - g 70 -4.2 -4.56775 | gap 1, overlap 3924540 ACTCTCGGCCAAAAA CCCGGC-GCCG ACAG CAGCTGCCAAG GCTGCGGCCAAAGTT Rfer_3527 3924108 - 3924710 + | poly granule associated TERM 3785 3924737 - 3924768 + F 73 -10.8 -3.40403 | opp_overlap 3924740, overlap 3924738 3924740 CGTGAAGCCACTGAC ACAGCTTGCGCGGC GAGG GCCGTGCAAGATGA TTCTCCTGAAGGGCG TERM 3786 3924738 - 3924767 + F 81 -14.3 -2.64099 | opp_overlap 3924740, overlap 3924737 3924740 GTGAAGCCACTGACA CAGCTTGCGCGGC GAGG GCCGTGCAAGATG ATTCTCCTGAAGGGC TERM 3787 3924740 - 3924765 + F 71 -11.1 -2.86271 | opp_overlap 3924740, overlap 3924738 3924737 GAAGCCACTGACACA GCTTGCGCGGC GAGG GCCGTGCAAGA TGATTCTCCTGAAGG TERM 3788 3924779 - 3924794 + F 100 -11.8 -5.59502 | GATGATTCTCCTGAA GGGCGC TTAG GCGCCC TTTTTTGCTTTTTTA TERM 3789 3925339 - 3925350 + G 71 -5.8 -4.4009 | overlap 3925333 3925336 GCCTGAGCCCCGGCC TGCC CACC GGCA TTTTCTCCAATGAGC Rfer_3528 3924930 - 3926192 + | patatin TERM 3790 3926209 - 3926198 - g 95 -7.2 -5.44119 | opp_overlap 3926200, overlap 3926199 3926200 CTCATGGTAAAAAAA GCGC CCCG GCGC ACCGCCGAACGGATT TERM 3791 3926467 - 3926479 + G 72 -2.6 -4.82901 | TCTGTTTGAGTTGAT CTGG CAGTA CCGG TTTTTATACCGCGAC TERM 3792 3926597 - 3926560 - g 74 -6.9 -4.40561 | gap 1, opp_overlap 3926595, overlap 3926563 GGTCCTTAAAAACAA GACCCGCGCCGTCAAAGC CTT GCTG-GACGGCATGAGCC GCACCGGCGCGGTGC TERM 3793 3926597 - 3926613 + G 78 -13.7 -3.24825 | opp_overlap 3926563, overlap 3926595 CTGGACGGCATGAGC CGCACCG GCG CGGTGCG TATTGATTCGCGTGA TERM 3794 3926747 - 3926725 - g 80 -9.9 -4.11394 | gap 1, opp_overlap 3926736 3926738 3926738 ACTCGAGCCTGAAAA CGCGCAGGCA GCAC TGC-TGCGCG GTGCGCACCACGTCT Rfer_3529 3926186 - 3926848 + | TetR family transcriptional regulator TERM 3795 3926867 - 3926853 - f 80 -5.6 -4.84918 | GCGAGAAATAGAAAA GCCGGT CAC ACCTGC CACAGGAGACAAAAA Rfer_3530 3926882 - 3927658 + | hypothetical protein Rfer_3531 3929212 - 3927722 - | hypothetical protein TERM 3796 3929390 - 3929403 + H 75 -3.8 -4.85433 | opp_overlap 3929389, overlap 3929389 ATACGCCGCAATGAC CCCA AACCTG TGGG TTTTTGACTTTATCT TERM 3797 3929475 - 3929450 - g 78 -2.5 -5.09259 | GACTTGAAAACAAAA TTCGAAACCGC CCTT GCCGATTCAAA AAACCTGAGTGAACG Rfer_3532 3929429 - 3929683 + | acyl-CoA-binding protein Rfer_3533 3930090 - 3929752 - | hypothetical protein Rfer_3534 3931165 - 3930083 - | putative zinc protease protein TERM 3798 3930906 - 3930863 - G 77 -8.1 -4.41494 | gap 2, overlap 3930864 3930867 GAGCGTCAATGAAAA CGCAGGCGCCGCCACCACGTT CCAC ACCACGG-AGCGGCGCC-GCA AGTCGGCATAACGCT TERM 3799 3931329 - 3931316 - g 70 -3.8 -4.58663 | ACCACGGGTGAAAAA GGCA TCATCC TGCC AGAGCAGATGCCTGC TERM 3800 3931467 - 3931477 + G 75 -8.2 -4.18934 | overlap 3931455 TCTCCCTGCGCCAGC GGGC GCA GCCC TTTATTGAGATGCTC Rfer_3535 3931193 - 3931537 + | hypothetical protein Rfer_3536 3932826 - 3931570 - | putative phenylacetate-CoA ligase TERM 3801 3932554 - 3932538 - G 84 -9.3 -4.56597 | CGGGGCTGGCAAAAA CGCGCGG CAT CCGCTCG CCAAAGCCGATCGCG Rfer_3537 3933692 - 3932883 - | ABC transporter related TERM 3802 3933750 - 3933723 - R 76 -12 -3.15579 | opp_overlap 3933717 CCAATCTTTCACCAA TCGGCAGCACTG CGCG CAATGCTGCCGG CTGGACTGTCATTGC TERM 3803 3933808 - 3933777 - R 75 -11 -3.32844 | gap 1, opp_overlap 3933767, overlap 3933778 TTGCCGACTTGAGAA GTCTTCATTGCGGAC CCA GTCCGCAATGA-GAT TCAAAAGACCGAGAA TERM 3804 3933807 - 3933778 - R 81 -14.5 -2.59564 | gap 1, opp_overlap 3933767, overlap 3933777 TGCCGACTTGAGAAG TCTTCATTGCGGAC CCA GTCCGCAATGA-GA TTCAAAAGACCGAGA Rfer_3538 3935148 - 3933835 - | hypothetical protein Rfer_3539 3936293 - 3935217 - | inner-membrane translocator Rfer_3540 3937246 - 3936317 - | inner-membrane translocator Rfer_3541 3938031 - 3937249 - | ABC transporter related Rfer_3542 3939974 - 3938028 - | AMP-dependent synthetase and ligase TERM 3805 3939038 - 3939052 + g 74 -5.6 -4.56597 | overlap 3939040 ACTTGCCATCCATCA GCGTCG GGC CGACCC TTTTTGCCACGCCCA TERM 3806 3939375 - 3939389 + g 73 -10 -3.66356 | CAACAGCGAGTTATG GGTGTG CAC CACACC TTTGGGGTTGCCGGT TERM 3807 3940225 - 3940235 + H 75 -6.8 -4.47491 | CAGTCACCACGGCGC GTGC TTG GCAC TTCTTTTCTTGCTCT Rfer_3543 3940256 - 3940966 + | Crp/FNR family transcriptional regulator TERM 3808 3941408 - 3941427 + G 70 -4.2 -4.44667 | opp_overlap 3941404, overlap 3941409 CAGCCGCAAAACCGC TGGGCG CAGGACAA CGCCCG TTTCTTCTTCCACCC Rfer_3544 3941024 - 3941938 + | RNA-binding S4 TERM 3809 3943360 - 3943316 - g 83 -4.2 -5.09225 | gap 1, overlap 3943318 3943319 AGGTCACTCAAAAAA TAGTGCAGTGG-CTGACGCCA GCGT CGGCGCCAGGCCAAGGCAGCA ACTAGCCGCCCGCTT Rfer_3545 3942094 - 3943365 + | PGAP1-like Rfer_3546 3944222 - 3943374 - | putative PAS/PAC sensor protein Rfer_3547 3945242 - 3944298 - | diguanylate cyclase Rfer_3548 3948265 - 3945242 - | PAS/PAC sensor hybrid histidine kinase Rfer_3549 3949093 - 3948374 - | cyclic nucleotide-binding domain-containing protein TERM 3810 3949485 - 3949508 + H 70 -6.6 -4.13995 | opp_overlap 3949480, overlap 3949486 CATAATTGAAGGTTG GCGGCGCC GATCCCAG GGCGCCGG TTTCATTTGTCAGAC TERM 3811 3949905 - 3949876 - g 78 -4.2 -4.7254 | gap 1 AGCGGCGACCAAAAA GCCGA-CTCGCAG CTCAT CGGCCAGTTCGGC GTCGGTTTTTACTCC TERM 3812 3950229 - 3950214 - g 71 -6.8 -4.2828 | gap 1 CCCGAGTGACGAAAA GGGC-GG CCG CCAGCCC GGTGGCATGGTCAAG Rfer_3551 3949537 - 3951528 + | heat shock protein 90 TERM 3813 3951611 - 3951638 + T 100 -13.5 -5.42259 | gap 1, opp_overlap 3951611 ATTCAAGCGCAAAAA GCCCCG-CAGTC AAACC GACTGGCGGGGC TTTTTTTAGGGGTGC TERM 3814 3951638 - 3951611 - T 100 -14.2 -4.67234 | gap 1, opp_overlap 3951611 ATTCAAGCGCAAAAA GCCCCG-CAGTCA AAC CGACTGGCGGGGC TTTTTTTAGGGGTGC Rfer_3552 3953011 - 3951713 - | dehydrogenase catalytic domain-containing protein TERM 3815 3952329 - 3952356 + g 80 -4 -5.02476 | TCGACATAGGTGAAG TGCGGAATGCGG CGTT TCGCCTCCTGCA TTTTTTGCGCGATCT Rfer_3553 3954050 - 3953013 - | transketolase TERM 3816 3954075 - 3954096 + r 75 -11.5 -3.33798 | overlap 3954074 3954073 CCCAACTCTTCGCGC TGCGCGCGC AAAT GCGCGGGCA TGTCTTTGTAGACGT Rfer_3554 3955288 - 3954053 - | 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) TERM 3817 3954196 - 3954208 + g 70 -3.3 -4.58283 | GCGCCACTGCGACCT GCGCT TCG AGCTC TTTTTGCGCCGCTTC TERM 3818 3955415 - 3955385 - R 95 -17.7 -2.66602 | opp_overlap 3955389, overlap 3955382 3955381 3955389 TGAGCCAACAATGCA GCAATGCCTACGG GATCA CCGCAGGCATTGC TTGGGGTGTGAAGCA TERM 3819 3955411 - 3955389 - R 74 -11.3 -3.25169 | opp_overlap 3955389, overlap 3955385 3955382 3955381 CCAACAATGCAGCAA TGCCTACGG GATCA CCGCAGGCA TTGCTTGGGGTGTGA Rfer_3555 3956237 - 3955599 - | glutathione S-transferase-like Rfer_3556 3956772 - 3956284 - | hypothetical protein Rfer_3557 3957873 - 3957052 - | ABC transporter Rfer_3558 3958793 - 3957870 - | ABC transporter related TERM 3820 3958289 - 3958254 - G 80 -11.1 -3.71848 | gap 1 TTCGGCCAGCAACAA CTGCAGGCGCTCCCAC ATCAG GTGGC-GCGCCTGCGG GTCCAGCCCGGTGGT purT 3958951 - 3960177 + | phosphoribosylglycinamide formyltransferase 2 TERM 3821 3960164 - 3960178 + T 84 -3.4 -5.32699 | opp_overlap 3960163 3960164, overlap 3960163 3960164 CGTCGAAGGTGAAAC CGCGCG CAG CGTGAG TTTTTTGCTATTTAA Rfer_3560 3960934 - 3960269 - | hypothetical protein Rfer_3561 3961302 - 3960946 - | putative lipoprotein TERM 3822 3961359 - 3961340 - R 74 -8.6 -4.02571 | gap 1, overlap 3961343 TAAGCGATCAAAGAA CAG-GGTGC CAC GCACCACTG TCGATACCGGACACA Rfer_3562 3962006 - 3961332 - | curli production assembly/transport component CsgG Rfer_3563 3962370 - 3962008 - | hypothetical protein TERM 3823 3962657 - 3962647 - R 77 -8.2 -4.07885 | TATCTGGCGGCAAAA CCGG CAC CCGG ATACGACGTCGGTCA Rfer_3564 3963609 - 3962815 - | DeoR family transcriptional regulator TERM 3824 3962956 - 3962973 + g 71 -8.4 -4.09685 | TGGCGCCCAGGCTTG CTGGGC CGACCT GCCCAG TTTTGACGAGTCGGC pdxA 3964690 - 3963695 - | 4-hydroxythreonine-4-phosphate dehydrogenase Rfer_3566 3965937 - 3964708 - | hypothetical protein Rfer_3567 3966911 - 3965937 - | 2-keto-3-deoxygluconate permease TERM 3825 3966941 - 3966973 + r 74 -8.6 -4.0348 | opp_overlap 3966940 3966941 3966943, overlap 3966967 3966969 ATGTTGAAGATTAAC GATCGTAACGATCA CAATA TGATTATTACGATC TTTATCGTATCATAT TERM 3826 3967406 - 3967420 + r 84 -3.4 -5.32699 | opp_overlap 3967404 3967405, overlap 3967405 3967406 CAACGAAGGCAAAGC CGCGCG CAG CGTGAG TTTTTTGCTATTTAA Rfer_3568 3968132 - 3967524 - | methyltransferase type 12 TERM 3827 3968024 - 3968001 - G 86 -12.4 -3.93236 | overlap 3967992 CAGCAAGCGCACAAA CTGCGCGTGC CCAC GCAGGCGCAG CAGCAGCTCACCCGG TERM 3828 3968240 - 3968209 - R 70 -2.8 -4.68593 | overlap 3968210 3968211 3968213 TTCAGTATTGAAAAA TTGATGTGGCGATC ACTG GAACGCCACCTCGG CAAAGCTGCGCAGCT Rfer_3569 3969759 - 3968221 - | AMP nucleosidase TERM 3829 3968825 - 3968849 + g 80 -14.3 -3.04792 | overlap 3968845 TGGTCGGTGATGGTC TTGGCGTTGGC CGG GCCGACGCCGA TGTTGACCATGCTGA TERM 3830 3969520 - 3969485 - G 74 -3.9 -4.73108 | overlap 3969486 GCCACAAAACCAAAA CTCAGGCGTGCACTC TCGGGC GAGTGCAGGCGCGAC ACGGTGTCGGTCTGG TERM 3831 3969679 - 3969639 - G 78 -9.8 -3.85698 | gap 2 TGTTGGTGTCATAAA TTTCACGGACCCGGGCCAGC GCG GC-GGCT-GGGTCGGTGAAA CTGGCAGGGGCAATG TERM 3832 3970679 - 3970636 - g 91 -13.9 -3.75766 | gap 2, opp_overlap 3970671, overlap 3970670 3970671 GGGACAACCCAACAA CGTGGCCGCGTTTGCTGCCGC GTCT GCGGCA-CAAGCGCCGCC-CG GCGCGCGCTGGCGTT Rfer_3570 3969782 - 3971221 + | beta-lactamase Rfer_3571 3971325 - 3972881 + | glutamate--cysteine ligase, monofunctional Rfer_3572 3974864 - 3972888 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3833 3973541 - 3973497 - G 78 -14.1 -3.15544 | TGCGATGGTGATGAA GCGCGCCGGCGGTACCAGGCC TTC GATCGGGCACTGCCAGCGCAC CAAGGCTTCGGCACC Rfer_3573 3975596 - 3974907 - | response regulator receiver domain-containing protein TERM 3834 3975126 - 3975105 - G 75 -7.9 -4.21194 | gap 1 GTTGAGCACCCAAAA GCCCGCC-CG GTA CGTGGCGGCC AACACGTTGCTGAGC Rfer_3574 3976649 - 3975621 - | periplasmic sensor signal transduction histidine kinase TERM 3835 3976374 - 3976408 + g 71 -7.1 -4.2704 | gap 2, opp_overlap 3976364, overlap 3976373 3976365 CAACAGGACCAGGGC CCGCTGCTGGTCGTTGT TGT GCTGCG-CCAGC-GCGG TTTGTTGATCCTGCA Rfer_3575 3977976 - 3976825 - | peptidase M14, carboxypeptidase A TERM 3836 3976867 - 3976879 + g 85 -9.1 -4.59853 | opp_overlap 3976847 CAGCGGCAGCAGCAC GCTGG CGC CCAGC TTTTTGGAGCGTTCG Rfer_3576 3979352 - 3978012 - | anaerobic c4-dicarboxylate membrane transporter family protein TERM 3837 3980005 - 3980023 + G 81 -4.5 -5.0133 | GCTCGACGAGGCCGA CCGCATG CTCGA CATGGGG TTTTTTGACGACATG Rfer_3577 3979493 - 3980914 + | ATP-dependent RNA helicase DbpA Rfer_3578 3981060 - 3981296 + | hypothetical protein TERM 3838 3981321 - 3981343 + T 73 -5.4 -4.66347 | overlap 3981322 3981324 TATTTTTCCGCTGCG ATGCGCGCGG CGG CGGCGCGTAA TTTGTCTTTTTTGCT Rfer_3579 3982570 - 3981305 - | DEAD/DEAH box helicase-like TERM 3839 3981463 - 3981485 + g 75 -7.6 -4.18018 | CCGGCACCTGTTCGC GCGGCAGGCT CAA ACCCTGACGC TTTTCAATCAAACGC Rfer_3580 3982673 - 3983599 + | beta-lactamase-like TERM 3840 3983622 - 3983605 - T 100 -12.7 -5.14563 | CGCCGGATGAAAAAA CGGCACC CGAA GGTGCCG TTCCGGCGGGATCAG Rfer_3581 3985968 - 3983710 - | malate synthase G TERM 3841 3984118 - 3984139 + g 73 -4.3 -4.72272 | overlap 3984097 3984107 GTTGTCGAGCTCCTG CTGGATCTC GGCG GCGCTCCAG TTTTTACTGGCCGCC TERM 3842 3984454 - 3984464 + g 74 -6.8 -4.3467 | CTCGTAAGCCTGAAT CCAG GCG CTGG TTTTCATGTCGCCCT Rfer_3582 3986818 - 3986051 - | haloacid dehalogenase, type II TERM 3843 3986873 - 3986856 - H 79 -3.3 -5.25656 | overlap 3986845 3986857 AAAACGAGCAAAAAA TGGCGCT CGTT AACGCCG ATCGATTCTTGACTA TERM 3844 3987027 - 3987015 - H 100 -3.4 -6.15717 | GAAACATAAAAAAAA GATC GTGGG GATC GCCTTGCTGTGCCTG TERM 3845 3987828 - 3987866 + G 73 -4.5 -4.60041 | gap 2, opp_overlap 3987813, overlap 3987848 3987863 TCAGCGCGATTTGAC CGACCTGAGCGCACGCTTG GCG CAGGCG-GAG-TCGGGGCG TTTTTCCGCCTGGGT TERM 3846 3987906 - 3987929 + G 81 -5.2 -4.88918 | gap 1, overlap 3987909 3987920 ACTTGTGGCCGGTCT GCT-GCTCAGC CTG GCTGCGCTGGC TTTTCTTTGGAATCG Rfer_3583 3987031 - 3988518 + | hypothetical protein Rfer_3584 3989431 - 3988604 - | GntR-like TERM 3847 3988889 - 3988913 + g 71 -7.7 -4.09739 | opp_overlap 3988883 GTAATCAAAGTGGTG GGCCACGTCGC CGC GTGCGGTGGCC TTTTCGAAGCCTTCC Rfer_3585 3989618 - 3991051 + | betaine-aldehyde dehydrogenase TERM 3848 3991284 - 3991296 + G 84 -10.5 -4.15044 | opp_overlap 3991280 ACATCACCCAAGCCG GCGGC GCA GCCGC TTTCTTCGCAGCCGA Rfer_3586 3991127 - 3991888 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 3849 3992000 - 3991982 - T 81 -6.8 -4.82901 | opp_overlap 3991989, overlap 3991989 GCTTCGTCAGAAAAA CAAAAAAG CGG CCTTTTTG AGGGGCCGCTTTTCG TERM 3850 3991989 - 3992009 + T 88 -11.1 -4.11484 | opp_overlap 3991982 3991989 CAGAAAAACAAAAAA GCGGCCTTT TTG AGGGGCCGC TTTTCGCGAATTACC TERM 3851 3992009 - 3991989 - T 100 -6.8 -5.98675 | opp_overlap 3991989, overlap 3991982 CAGAAAAACAAAAAA GCGGCC TTTTTGAGG GGCCGC TTTTCGCGAATTACC Rfer_3587 3992858 - 3992181 - | response regulator receiver domain-containing protein Rfer_3588 3995188 - 3992861 - | multi-sensor signal transduction histidine kinase TERM 3852 3993670 - 3993649 - G 74 -11.5 -3.46088 | overlap 3993647 AGATGTCATCAAAGA CCAGGAGCC GTGT GGCCCCCGG CAGCGAGGCGCCACG TERM 3853 3994903 - 3994882 - G 70 -3.7 -4.62069 | gap 1, overlap 3994884 CCGCCAGCGCAAAAA TCGC-GGCCA GTT TGACCAGCAA GCGGCTGCCAAATTT Rfer_3589 3995796 - 3995185 - | putative proline rich signal peptide protein Rfer_3590 3997141 - 3995777 - | sun protein TERM 3854 3997177 - 3997219 + r 81 -12 -3.60296 | opp_overlap 3997182, overlap 3997179 3997181 3997182 GTCAAGATTTGCAAA AAAAACGCCTCAAGCCCG CACCAAA CGGGCTTGAGGCGCTATG TTTAACATAGCAATC TERM 3855 3997179 - 3997217 + r 95 -14.6 -3.38046 | opp_overlap 3997182, overlap 3997177 3997181 3997182 CAAGATTTGCAAAAA AAACGCCTCAAGCCCG CACCAAA CGGGCTTGAGGCGCTA TGTTTAACATAGCAA TERM 3856 3997181 - 3997215 + r 100 -17.2 -3.26031 | opp_overlap 3997182, overlap 3997179 3997177 3997182 AGATTTGCAAAAAAA ACGCCTCAAGCCCG CACCAAA CGGGCTTGAGGCGC TATGTTTAACATAGC TERM 3857 3997182 - 3997214 + r 100 -20.7 -2.55297 | opp_overlap 3997182, overlap 3997181 3997179 3997177 GATTTGCAAAAAAAA CGCCTCAAGCCCG CACCAAA CGGGCTTGAGGCG CTATGTTTAACATAG TERM 3858 3997214 - 3997182 - R 100 -21.4 -5.76949 | opp_overlap 3997182 3997181 3997179 3997177 GATTTGCAAAAAAAA CGCCTCAAGCCCGC ACCAA ACGGGCTTGAGGCG CTATGTTTAACATAG Rfer_3591 4001457 - 3997240 - | DNA-directed RNA polymerase subunit beta' TERM 3859 3998040 - 3998069 + g 78 -2.7 -5.03314 | gap 1, opp_overlap 3998032 3998063, overlap 3998040 3998051 CAAACAGCTCGGCAA CCCGCGGCA-AGCC GCC GGTAATATCGCGGG TTTTTTGGCCCTCGA TERM 3860 3999625 - 3999609 - G 70 -12.3 -2.84325 | opp_overlap 3999608 3999607, overlap 3999606 3999604 TGTCGGCAAACACCA CGGTCTC TTT GAGACCG CATTTGCGGAACGAC TERM 3861 4000760 - 4000776 + g 100 -9.4 -5.03145 | TCGAGCACCATCCAC TCCGGC TTGAT GCCGGA TTTTTTGAACGCTTC Rfer_3592 4005588 - 4001536 - | DNA-directed RNA polymerase, beta subunit TERM 3862 4001951 - 4001962 + g 71 -7.2 -4.21194 | GCTTGGGTGCGCGCC GGGG TGAG CCCC TTTTGCCTGATCGCA TERM 3863 4002628 - 4002654 + g 79 -8 -4.56597 | CGAAGTCAAATACGC CTTGTCAATGGT CGT GCCTTTGGCAAG TTTTTGCGGACCCCC TERM 3864 4002870 - 4002897 + g 70 -4.9 -4.56775 | gap 1, opp_overlap 4002829 4002874, overlap 4002867 4002870 4002871 4002873 AGCCCTGGTCCACAC GC-AATGACGTG TCTTT CACGTCACTGGC TTTTTCACCGAAGAT TERM 3865 4003522 - 4003534 + g 71 -7.7 -4.07568 | GCGCTCAATGCCTGT GCCAA CCA TTGGC TTTTCCGGGCGCAGA TERM 3866 4004220 - 4004239 + g 71 -8.6 -4.08216 | gap 1 CTTTTTCAATCCGCG CCAG-ACCG GTC CGGTACTGG TTTTCGGCCAGCTCA TERM 3867 4004481 - 4004461 - G 81 -13.3 -3.29511 | overlap 4004464 GTCAGGGTTGTAGAA CAAGCGCTG GAA CAGCGCCTG CACCGCGTCCTCGGT TERM 3868 4004478 - 4004464 - G 80 -11.4 -3.79113 | overlap 4004461 AGGGTTGTAGAACAA GCGCTG GAA CAGCGC CTGCACCGCGTCCTC TERM 3869 4005486 - 4005470 - G 82 -12.3 -3.6003 | opp_overlap 4005483 4005484, overlap 4005482 4005483 GAAATGATCGGGAAA GCCGCTT CAA AAGCGGC TTGAAGCCCTTCTGC TERM 3870 4005818 - 4005857 + r 86 -16.1 -2.78384 | gap 1, opp_overlap 4005796 4005818 4005820 4005830, overlap 4005819 4005830 CAGTCGGGATCAGAA GA-CACTGAAAAACAGAC CTTGA GTCTGTTTTTCAGTGCTC TCTCATAAGCAGCAA TERM 3871 4005857 - 4005818 - R 100 -16.8 -3.4072 | gap 1, opp_overlap 4005818 4005819 4005830, overlap 4005796 4005820 4005830 CAGTCGGGATCAGAA GA-CACTGAAAAACAGACC TTG AGTCTGTTTTTCAGTGCTC TCTCATAAGCAGCAA TERM 3872 4005819 - 4005855 + r 86 -15.4 -2.94099 | opp_overlap 4005818 4005820 4005830, overlap 4005818 4005830 AGTCGGGATCAGAAG ACACTGAAAAACAGAC CTTGA GTCTGTTTTTCAGTGC TCTCTCATAAGCAGC TERM 3873 4005854 - 4005820 - R 100 -19.6 -3.27475 | opp_overlap 4005819 4005818 4005830, overlap 4005818 4005830 GTCGGGATCAGAAGA CACTGAAAAACAGACC TTG AGTCTGTTTTTCAGTG CTCTCTCATAAGCAG TERM 3874 4005844 - 4005830 - R 78 -6.4 -4.74453 | opp_overlap 4005819 4005818 4005830, overlap 4005820 4005818 GAAGACACTGAAAAA CAGACC TTG AGTCTG TTTTTCAGTGCTCTC TERM 3875 4005830 - 4005844 + r 78 -5.7 -4.69664 | opp_overlap 4005830 4005820 4005818, overlap 4005819 4005818 GAAGACACTGAAAAA CAGAC CTTGA GTCTG TTTTTCAGTGCTCTC TERM 3876 4005901 - 4005874 - R 82 -11.3 -3.86944 | gap 1, opp_overlap 4005874 4005899 CTCATAAGCAGCAAA GGCTGGG-GCCC TTTTG GAGCACCCAGCC TCTCTTGAGAGCTCA Rfer_3593 4006289 - 4005918 - | ribosomal protein L7/L12 Rfer_3594 4006868 - 4006332 - | ribosomal protein L10 rplA 4007832 - 4007137 - | 50S ribosomal protein L1 Rfer_3596 4008264 - 4007833 - | ribosomal protein L11 TERM 3877 4007981 - 4008019 + g 72 -2.3 -4.72986 | gap 1, overlap 4007985 TTGCCAACCTTGACA GACTGT-GGCGTGGCCGA GCCT TTGGTCACTCCGACTGCC TTTTTGATCAGGATC TERM 3878 4008084 - 4008067 - G 75 -8.5 -4.28487 | overlap 4008083 GATGACAAAAGTAAA GCTTTTG TCTG CAAAAGC GGTGATAACCACCGG Rfer_3597 4009059 - 4008451 - | NusG antitermination factor TERM 3879 4008901 - 4008936 + g 73 -4.6 -4.67353 | gap 1, opp_overlap 4008899 4008901, overlap 4008897 ATGCTGCATACCAGA GCGATTGATGCGCTCCG TGA TGTTGCGC-TCAACCGC TTTTTCCATGCCTGA secE 4009442 - 4009059 - | preprotein translocase subunit SecE TERM 3880 4009365 - 4009350 - G 85 -6 -5.09762 | GCCGAACAAATAAAA GGCTGC AAGC GCGGCC ACAACCAACACGGCG TERM 3881 4009502 - 4009480 - R 70 -7.1 -4.10552 | gap 1, opp_overlap 4009484, overlap 4009484 CTGCATCAAATCAAA TTCAGCCGTC TTGA GACG-CTGAA GCCCGCTATTCGCAT Rfer_3599 4010834 - 4009644 - | elongation factor Tu TERM 3882 4011114 - 4011104 - R 70 -6.8 -4.18164 | overlap 4011091 4011107 AAGCTTGCAAAACAA GCAG CCG CTGC GGCGTCCCCGCATAC Rfer_3600 4012079 - 4011327 - | uracil-DNA glycosylase Rfer_3601 4012875 - 4012081 - | indole-3-glycerol-phosphate synthase TERM 3883 4012609 - 4012582 - G 76 -6.2 -4.60255 | ACAACCCCGGAAAAA CTGCAGGTCGGT GAGT ACCGACAAACAG GCGGCCCCATGCTCC TERM 3884 4012776 - 4012757 - G 74 -6.4 -4.37092 | overlap 4012772 AGGGCGGCGACAAAA TCCCGTGT CAAC ACACGCGA CTCGGCATCGGCACG Rfer_3602 4013924 - 4012872 - | anthranilate phosphoribosyltransferase TERM 3885 4013787 - 4013833 + g 76 -14.5 -2.62735 | gap 1, overlap 4013825 CAGGCCGGTGATCAG GGC-CGCCATCATGACCGGCGA CCAC TCGCCCGTCATGATGCCGCGCA TGATGTGCAGCATCT TERM 3886 4014030 - 4014018 - R 83 -7.7 -4.67011 | overlap 4014023 AAGGCCAGTTAAAAA CAAGG CCA CCTTG GGGTTCAAGGCATTG TERM 3887 4014212 - 4014186 - R 81 -13.6 -2.98223 | overlap 4014202 CACGTAGACCAGATA GGCCGCCCCCAC AAA GTTGGGTCGGCC AAGCCAGCGGCTCAC Rfer_3604 4015291 - 4014224 - | threonine aldolase TERM 3888 4014848 - 4014833 - G 73 -9 -3.93288 | CTGCACGTAATCAAA CGGCAA CAGC TTGCCG CCCCACGTGTTTTCC Rfer_3605 4016019 - 4015393 - | anthranilate synthase component II TERM 3889 4015853 - 4015826 - G 72 -11.2 -3.40597 | overlap 4015824 GCCGCCACCGAAATA CCGGCCTCCGTC GGTG AACAGGGGCCGG GCGAGATCACCAGCC Rfer_3606 4018318 - 4016045 - | diguanylate cyclase with PAS/PAC sensor TERM 3890 4016720 - 4016735 + g 70 -4.6 -4.57569 | opp_overlap 4016719 4016720, overlap 4016721 GATGCTGAGCCAAAC CGGGAA GCAC TCCCCG TTTTTGCGCCGGTCC Rfer_3607 4019826 - 4018315 - | anthranilate synthase component I TERM 3891 4019386 - 4019401 + g 81 -4.6 -4.89852 | overlap 4019375 4019378 AAGGGTGTCGGGCGG GCACGA TTTT TCGAGC TTTTTCTCGATGTAG TERM 3892 4019475 - 4019462 - G 70 -3.7 -4.62336 | AGGCCACCGCAAAAA CGCGG CAGA CCGGG GCGCAGCGCGACTTT Rfer_3608 4020206 - 4020790 + | putative lipoprotein transmembrane TERM 3893 4021351 - 4021325 - g 93 -7.8 -5.00616 | opp_overlap 4021309, overlap 4021326 4021327 TCGTGGTGGAAAAAA TCCGCCCCGCGT TTG ACGCCGCGCGGG ACGCGGCTGACGCCC TERM 3894 4021350 - 4021326 - g 77 -11.3 -3.60048 | opp_overlap 4021309, overlap 4021325 4021327 CGTGGTGGAAAAAAT CCGCCCCGCGT TTG ACGCCGCGCGG GACGCGGCTGACGCC Rfer_3609 4020874 - 4022664 + | methyl-accepting chemotaxis sensory transducer Rfer_3610 4022766 - 4024301 + | methyl-accepting chemotaxis sensory transducer Rfer_3611 4025086 - 4024298 - | phosphoglycolate phosphatase TERM 3895 4024585 - 4024560 - G 74 -6.1 -4.53602 | gap 1 GTGAGATCAAAGAAA CCG-TCCAGGCC CTT GGCCTGCAGCAG CGCGCGGGCGAACGC Rfer_3612 4028451 - 4025110 - | methylmalonyl-CoA mutase TERM 3896 4025218 - 4025229 + g 70 -3.6 -4.58685 | AAACACGTTCTTGTT GTCG ATCA CGGC TTTTTGCAGGCGTTT TERM 3897 4025288 - 4025306 + g 80 -3.1 -5.06961 | overlap 4025294 AGCGCGTGGAAGTCG GCCAG GCGCTTGAG CTGGC TTTGTTTTTCTTCCT TERM 3898 4026104 - 4026083 - G 78 -6.6 -4.59109 | GACACGCTGTAAAAA TTGCGCAC CCGGTT GTGCACAA AATATTCGGCGATGT TERM 3899 4027355 - 4027385 + g 85 -6 -5.03314 | opp_overlap 4027363, overlap 4027356 TCGAACTTGTTGATG GCGACAAACTCGGC GAA GTCGAGCATGTCGA TTTTTTCCAGCTGGC TERM 3900 4027638 - 4027589 - G 72 -12.1 -3.05384 | CGCGTGGCGAGCGAA CGCATGAACACACGCGGCCCCTG ACTC CAGGGACTGATCGCATTCATGCG GATGCGGTCGCCCAG TERM 3901 4027789 - 4027807 + g 78 -4.6 -4.7254 | overlap 4027778 GCCGCCGGTGCCGGT GATACC CAGAACC GGTATC TTTTTGGTAGCAGCT TERM 3902 4028155 - 4028165 + g 71 -8.2 -4.08767 | GACCTGGATGTGCGC GCCG CCC CGGC TTTTGAGCAGGTCCA TERM 3903 4028286 - 4028315 + g 70 -12.9 -2.91144 | gap 1, overlap 4028283 4028313 CTTCGACGCTGCGGT TGTGC-CCGAGGTG AAT CACCTCGGCGCCCA TGCTTTGCAGGATGC TERM 3904 4028512 - 4028550 + H 70 -6.9 -4.08216 | gap 1, opp_overlap 4028505, overlap 4028520 CGATCAGACCAGCAT TCGCTGA-CTTGACGTTT ACGT AAACGTCAATCTTAGCGG TTTTCCACAACATCG Rfer_3613 4028646 - 4029128 + | rhodanese-like protein TERM 3905 4029223 - 4029240 + G 75 -7.7 -4.15788 | gap 1 CGCGATGCGCCCCTG CT-GGCGC AAG GCGCCGAG TTTCTTGACAACATT Rfer_3614 4029142 - 4029909 + | pantothenate kinase Rfer_3615 4031168 - 4029975 - | peptidase M20D, amidohydrolase TERM 3906 4031435 - 4031456 + G 73 -5.1 -4.66163 | gap 1, overlap 4031439 CTGCTGCCCAGGAGG CT-ATCGCCG AAG CGGCGTTGAG TTTTTCCATCAAGGT TERM 3907 4031439 - 4031451 + G 70 -10.5 -3.46102 | overlap 4031435 TGCCCAGGAGGCTAT CGCCG AAG CGGCG TTGAGTTTTTCCATC TERM 3908 4031716 - 4031730 + G 72 -11.4 -3.33261 | TACCCTGGCGGCCAC CACGGC AAT GCCGTG TTGTCGAAGTTCCAC TERM 3909 4032014 - 4031973 - g 77 -14.4 -2.73364 | gap 1 CGGCGACTTCAACGA CTGGCGCCGCCGCGCCCAC GCGGT GCTGGCGCAG-GGCGCCAA TCTGCATGAAGTATT Rfer_3616 4031338 - 4032201 + | endonuclease/exonuclease/phosphatase TERM 3910 4032220 - 4032206 - g 81 -5.6 -4.81083 | overlap 4032210 TCGAATTATGAAAAA CCGATG GGT CAGCGG CAACCGGGTGACCCT TERM 3911 4032783 - 4032804 + G 71 -6.5 -4.2558 | gap 1, overlap 4032758 TTACCTGAGCTGCCG GCGGCA-GGC AAG GCCGTGGCGC TTTTGGTCACGCGTG TERM 3912 4032854 - 4032838 - g 73 -5.1 -4.66938 | ACCGCCAACACAAAA GCGACAT CGA ACGTCAC TACCGCGTTGCCATC Rfer_3617 4032198 - 4033448 + | cardiolipin synthase 2 TERM 3913 4033890 - 4033901 + G 72 -2.2 -4.81249 | overlap 4033881 4033898 TCGGCTACCTGCTGC TGGC GGGC GTCA TTTTTGGCTTTCACG TERM 3914 4034015 - 4034035 + G 74 -7.5 -4.38927 | overlap 4034003 TATCTGCTGCTGTGC GCTGTGTTG CGC CGGCGCAGC TTTGTTCTCTGGGGC TERM 3915 4034430 - 4034393 - g 85 -5.4 -5.02476 | gap 1, overlap 4034382 4034381 4034394 ACACGGGCCAAAAAA TCGGCGCCCGCAC-GCC GTCAG GGCAGCGCGGCGGCGGA CAAGGAATTGGAATA Rfer_3618 4033445 - 4034446 + | hypothetical protein TERM 3916 4035599 - 4035587 - g 81 -4.7 -5.00616 | overlap 4035588 TTCCCGGTTAAAAAA GCGGC ACT GCAGC GGCCCGACCTGCTGG Rfer_3619 4034501 - 4036612 + | molybdopterin oxidoreductase TERM 3917 4036662 - 4036674 + T 70 -3.3 -4.82901 | ACGATTGTATTCATT GGGCT AGA AGCGC TTTTTATAGACAAAC Rfer_3620 4037565 - 4036690 - | LysR family transcriptional regulator TERM 3918 4036989 - 4036979 - G 71 -8.2 -4.07568 | GCCCCTCTTTGAAAA CGCC AGT GGCG GTCGCGCTCGTCCTC TERM 3919 4037791 - 4037807 + G 78 -6.5 -4.58663 | ACCAGCTATGGCGTG GCCAAAG GGG CTCTGGC TTTTTACCCGGTACT TERM 3920 4037907 - 4037950 + G 72 -2.3 -4.84311 | gap 2, opp_overlap 4037901 4037902, overlap 4037928 CGTTCAAAAGCGCGA TGCCCTGCGCACGGGCCTGCC GCTG GGCATGC-TGA-TGCTGGGCA TTTTCTTGTGTGAAA Rfer_3621 4037623 - 4038582 + | hypothetical protein TERM 3921 4038632 - 4038596 - f 76 -10.2 -3.65604 | gap 2, overlap 4038594 AAGACCACACAAATA GCACGCTGGCCG-GT-TG GCG CAGACGCGACCAGCGAGC CTGAAAGCAGAATTG Rfer_3622 4038812 - 4039522 + | TetR family transcriptional regulator TERM 3922 4039944 - 4039916 - g 80 -10.9 -3.76839 | overlap 4039904 4039918 CAAGCGCAATTGAAA GATGCCACCGCGC GGC GCGCACTGGCAGC CGCCAACACCCAGCG TERM 3923 4039942 - 4039918 - g 79 -12.1 -3.46336 | overlap 4039904 4039916 AGCGCAATTGAAAGA TGCCACCGCGC GGC GCGCACTGGCA GCCGCCAACACCCAG TERM 3924 4040679 - 4040669 - g 73 -4.6 -4.70659 | GTCTACAGCGAAAAA GCCC TCA AGGC CGGTGCCCGCGTGAA Rfer_3623 4039538 - 4040734 + | secretion protein HlyD Rfer_3624 4040731 - 4041924 + | hypothetical protein Rfer_3625 4041921 - 4042652 + | ABC transporter related TERM 3925 4043672 - 4043692 + G 84 -3.2 -5.26875 | gap 1, overlap 4043673 AGCCACGCGGCCGGC TGGCC-GCA CTGG TGCTGGCCC TTTTTTGCTTGACCC Rfer_3626 4042789 - 4045311 + | diguanylate cyclase with PAS/PAC sensor Rfer_3627 4045745 - 4045275 - | thioesterase superfamily protein Rfer_3628 4045802 - 4046167 + | alkylhydroperoxidase TERM 3926 4047003 - 4046989 - g 74 -11.4 -3.54408 | CCGTACCGAAATCAA GGGTCG TGG CGACCC GGTTCAGCTCGACTA Rfer_3630 4046561 - 4047199 + | toluene tolerance TERM 3927 4047382 - 4047350 - T 95 -14.9 -3.53091 | opp_overlap 4047350, overlap 4047353 ATGGCGGTGGTCAAA GGACCAAGCCAGTGC GGC GCACTGGCTTGACGC TTATTCCTTGATGGT TERM 3928 4047350 - 4047382 + T 80 -10.5 -3.84246 | opp_overlap 4047350 4047353 ATGGCGGTGGTCAAA GGACCAAGCCAGTGC GGC GCACTGGCTTGACGC TTATTCCTTGATGGT TERM 3929 4047379 - 4047353 - T 93 -17.4 -2.90496 | opp_overlap 4047350, overlap 4047350 GCGGTGGTCAAAGGA CCAAGCCAGTGC GGC GCACTGGCTTGA CGCTTATTCCTTGAT Rfer_3631 4048444 - 4047383 - | rhodanese-like protein Rfer_3632 4048858 - 4048538 - | hypothetical protein TERM 3930 4048920 - 4048886 - R 100 -13.7 -4.2528 | gap 1, opp_overlap 4048888, overlap 4048887 TGGTAAGTTAATAAA TGCCCGTTGAGCGCAA TCGT TTGCGCTCAAC-GGCT TGGGTGGTCAAGTCA TERM 3931 4048919 - 4048887 - R 100 -17.2 -3.14686 | gap 1, opp_overlap 4048888, overlap 4048886 GGTAAGTTAATAAAT GCCCGTTGAGCGCAA TCGT TTGCGCTCAAC-GGC TTGGGTGGTCAAGTC TERM 3932 4048888 - 4048919 + r 100 -17.4 -3.09834 | opp_overlap 4048887 4048886 GTAAGTTAATAAATG CCCGTTGAGCGCAA TCGT TTGCGCTCAACGGC TTGGGTGGTCAAGTC Rfer_3633 4050702 - 4048933 - | hypothetical protein Rfer_3634 4051374 - 4050748 - | cytochrome B561 Rfer_3635 4053005 - 4051389 - | cytochrome c family protein TERM 3933 4052863 - 4052851 - G 77 -7.7 -4.4078 | opp_overlap 4052851 GGGCCGGAAGCAAAA TCCTG ATC CAGGA TCTTGAACTTGCTGT Rfer_3636 4053612 - 4053250 - | ArsR family transcriptional regulator Rfer_3637 4054324 - 4053746 - | nitroreductase TERM 3934 4054041 - 4054051 + g 79 -8.2 -4.56597 | opp_overlap 4054038, overlap 4054040 AAGATCAGCAAGGGC GCGC GAT GCGC TTTTTCACGCGCGGA TERM 3935 4054193 - 4054167 - G 70 -4.4 -4.4891 | gap 1, opp_overlap 4054188, overlap 4054169 GGCACCAGCACAAAA CG-CCACGGCC GCAACT GGCCATGATCG GGCGCCGCAGCGGCT Rfer_3638 4055320 - 4054562 - | metal dependent phosphohydrolase TERM 3936 4056193 - 4056237 + G 80 -15 -3.04144 | gap 1, opp_overlap 4056186 4056189 4056224 4056225, overlap 4056186 TTTTAAAAGCACTGC GCCAGGGCGAGCGCTTTTGCG CGAT CGAAAACGCGCGCGCC-TGGC TGTTCGAGGTAGCGC Rfer_3639 4056069 - 4056599 + | sigma-24 (FecI-like) Rfer_3640 4057709 - 4056678 - | integrase TERM 3937 4057098 - 4057142 + g 80 -11.4 -3.74693 | overlap 4057114 TATCAGCAGCCGGGT GTTGCGCTCAACCAGCGTGC CCACC GCACTTTGATTGAGCGCGCC TTTGATCAGGTCGCC TERM 3938 4058838 - 4058860 + G 70 -4 -4.66537 | opp_overlap 4058806, overlap 4058839 4058839 TTTGTGGCGGTGGTG GCCAGCGGCA TCC TGCTGGTGGG TTTTGTGTTCAACGC Rfer_3641 4057839 - 4058885 + | permease Rfer_3642 4058957 - 4059193 + | thiol-disulfide isomerase and thioredoxins Rfer_3643 4059215 - 4059445 + | hypothetical protein Rfer_3644 4059570 - 4060478 + | cation diffusion facilitator family transporter Rfer_3645 4061806 - 4060475 - | periplasmic sensor signal transduction histidine kinase TERM 3939 4061513 - 4061528 + g 71 -6 -4.37886 | overlap 4061515 4061517 GAGCATGGCCCCAAT CGCGCC GCGT GGCGGG TTTTGTGACACCTGG Rfer_3646 4062534 - 4061803 - | two component transcriptional regulator Rfer_3647 4062765 - 4063142 + | hypothetical protein Rfer_3648 4063681 - 4063211 - | AsnC family transcriptional regulator TERM 3940 4063361 - 4063322 - G 76 -9.4 -4.10161 | gap 1, opp_overlap 4063332, overlap 4063323 CACCAGTTGCGAAAA CGACT-CCAGATCGGGG GCAATCG CCTCGATCTGGTAGTCA TACCGGCCCGACAGG TERM 3941 4064466 - 4064500 + G 70 -4 -4.59773 | opp_overlap 4064463, overlap 4064467 4064468 CATGACCAAGTACCT GGGCGGCCACGGCG ACCTGAC CGCCGGCGCCGCGA TTTTTGCCGATGCCC TERM 3942 4064687 - 4064656 - g 76 -5.7 -4.60924 | opp_overlap 4064683 CAAAGCGCGCAAAAA GTGGCCGAGCTGC TGCAGC GCCACCCGGCGAC CAAGATGGTGCATTT Rfer_3649 4063828 - 4065084 + | methionine gamma-lyase TERM 3943 4066938 - 4066950 + G 70 -3.3 -4.62984 | overlap 4066925 CAGCGTGCACGGCCT GGCCA TGC TGCCC TTTTATATCTACTAC TERM 3944 4067666 - 4067678 + G 78 -2.6 -5.03314 | overlap 4067658 GCAGTGACACGCGGG CTGC CTTGC GCGG TTTTTTCGGGGTGGA Rfer_3650 4065109 - 4067736 + | 2-oxoacid dehydrogenase subunit E1 Rfer_3651 4067783 - 4069150 + | hypothetical protein TERM 3945 4069407 - 4069431 + G 91 -6.3 -5.40072 | CCGGGAGTTGCGCGA CGAGTTGCTCA GCA TGGGCTACACG TTTTTTTCGGAAGGC TERM 3946 4069923 - 4069906 - g 73 -10.5 -3.57144 | opp_overlap 4069911 GCTCTTAGCGTCAAA CGCCGCC TGCT GGCAGCG GACGTGCCGGTCGGT Rfer_3652 4069150 - 4070937 + | asparagine synthase, glutamine-hydrolyzing TERM 3947 4071199 - 4071214 + G 77 -4 -5.0133 | gap 1 TGCTGGAGACCGGAT TTG-GCC TGG GGCTCAA TTTTTTGACCACCTG Rfer_3653 4071015 - 4071764 + | hypothetical protein TERM 3948 4072366 - 4072384 + G 78 -3 -5.0916 | overlap 4072369 4072370 ATTTTGATGTATCTC CTGTCGGC GGC GCTGGTGG TTTTTGTCTTGCGCG TERM 3949 4072494 - 4072480 - g 70 -4.2 -4.57353 | CTGCAGGAGAGAAAA GCGG AACTGCA CCGC GCGCAAGCGGTCGCC Rfer_3654 4071832 - 4073790 + | diguanylate cyclase with PAS/PAC sensor Rfer_3655 4074690 - 4073800 - | patatin TERM 3950 4074177 - 4074154 - G 95 -11 -4.46112 | gap 1, overlap 4074168 TTGCACCGAAATAAA CAGCG-GCCGG AAA CCGACGCGCTG CCCCGTCAAAGAGTG Rfer_3656 4075069 - 4076031 + | hypothetical protein TERM 3951 4076076 - 4076041 - f 100 -16.9 -3.1706 | gap 1 AATTGAGCGGATCAA GACC-GCTGGCGCCGG GGTGG CGGGCGCCAGCAGGTC CTCAAGCCCGCTCGT TERM 3952 4076495 - 4076541 + F 100 -22.4 -3.14564 | opp_overlap 4076479 4076478, overlap 4076494 GAGCCGGATTGGGAT CTGGCGCGCTGATGGGCACC CGATTTT GATGCCGATCAGCGCGCCAG TTGGTGCCAAGGTGA TERM 3953 4077757 - 4077778 + G 78 -6.5 -4.62336 | opp_overlap 4077743, overlap 4077743 4077772 AGCCCTGGCTTCAAG CGCTTTCTG ATTC CAGCAGGCG TTTTTGCGCTGGCGT Rfer_3659 4077067 - 4078287 + | major facilitator transporter Rfer_3660 4080254 - 4078563 - | carbamoyltransferase TERM 3954 4078951 - 4078976 + g 80 -3.9 -5.06451 | opp_overlap 4078950 4078951, overlap 4078952 4078967 GTAAAGAGCATAAAT GGGCTTGGTTG ATTG CAGCCAAACCA TTTTTTGGCGTCCTC TERM 3955 4079490 - 4079474 - G 85 -2.9 -5.31456 | CGAATTGATAAAAAA CGTCAAA TAT CTTGTCG CTAAAAATGCCCGCA Rfer_3661 4080403 - 4081287 + | hypothetical protein TERM 3956 4082282 - 4082296 + G 84 -10 -4.26903 | GTCGATGCTTGGTTA TCGCTG CTG CAGCGA TTTTGATAGGCTCCC Rfer_3662 4081680 - 4083461 + | glycoside hydrolase family protein Rfer_3663 4084779 - 4083712 - | bile acid:sodium symporter TERM 3957 4084253 - 4084240 - G 81 -5.9 -4.76041 | GAGACCGAGCAAAAA CGCCA CCAG CGGCG CATAGGCCACGATCA Rfer_3664 4086552 - 4084783 - | arsenite-activated ATPase (arsA) Rfer_3665 4086999 - 4086616 - | arsenical resistance operon trans-acting repressor ArsD TERM 3958 4086789 - 4086752 - G 71 -8.3 -4.08692 | TAACGCCCGGCAAAA GCCACTTCACCGTCCAC CAGT GTGATCGGCAAGGCGGC CTCACCCGAGCGCTC Rfer_3666 4087510 - 4087028 - | protein tyrosine phosphatase Rfer_3667 4087908 - 4087579 - | ArsR family transcriptional regulator Rfer_3668 4088239 - 4088027 - | hypothetical protein Rfer_3669 4089000 - 4088287 - | nucleic acid binding, OB-fold, tRNA/helicase-type Rfer_3670 4090723 - 4089023 - | FAD dependent oxidoreductase TERM 3959 4090789 - 4090752 - R 74 -2.6 -5.08824 | gap 1 CGGCTAGTCAAAAAA TCTTGCTGGCGTCTGCG TTATG CGCAT-CACCAGCCGGA AAAAAAGCCGTGTGA TERM 3960 4090822 - 4090796 - R 100 -9.5 -5.42259 | opp_overlap 4090794 CCAGCCGGAAAAAAA GCCGTGTGA TGTTGTTGC TCACACGGC CATACTTTAGAGCAT Rfer_3671 4092591 - 4090858 - | extracellular solute-binding protein Rfer_3672 4092987 - 4092679 - | putative integral membrane protein TERM 3961 4092969 - 4092951 - G 88 -3.1 -5.55698 | gap 1, overlap 4092952 TACAACTGAAAAAAA CGG-CGAC GGGT GTCGTCCA GGCCATCCATTCAAA Rfer_3673 4093813 - 4093001 - | binding-protein-dependent transport systems inner membrane component TERM 3962 4093562 - 4093583 + g 74 -13.1 -3.14564 | opp_overlap 4093559 GGCGGCAGGCAAGGC CACCGTGAT CGAA ATCACGGTG TTGATGACGACATAA Rfer_3674 4094699 - 4093806 - | binding-protein-dependent transport systems inner membrane component Rfer_3675 4095772 - 4094696 - | ABC transporter related Rfer_3676 4096847 - 4095774 - | ABC transporter related TERM 3963 4096511 - 4096530 + g 75 -8.6 -4.17762 | GTTTTTCAGCCAGTG CGTTGACC CGCT GGTCAATG TTCTTTTCGCCGCTC TERM 3964 4096801 - 4096814 + g 80 -3.1 -5.03314 | gap 1 ATGTCGTAGAGCCAG GTCTGG CTG CC-GAC TTTTTTACCGATGCC Rfer_3677 4097007 - 4097771 + | DeoR family transcriptional regulator Rfer_3678 4097768 - 4099258 + | glycerol kinase TERM 3965 4099495 - 4099517 + G 76 -6.9 -4.56597 | gap 1, overlap 4099496 GCAGTTATGGCCTGC AGCCCCACGC CGAG GCG-GGGGCA TTTTTGGCCCAGGCC Rfer_3679 4099344 - 4100159 + | pyrroline-5-carboxylate reductase Rfer_3680 4101062 - 4100172 - | 4-hydroxybenzoate polyprenyl transferase Rfer_3681 4102117 - 4101164 - | LysR family transcriptional regulator TERM 3966 4101496 - 4101480 - G 72 -2.1 -4.84359 | overlap 4101481 GCATTGGTAGAAAAA CGCGCGA ACT CCGGGCA GACCTCCAGCACGTG TERM 3967 4102084 - 4102067 - G 79 -12.7 -3.53012 | CGCCGCCTTGCCAAA GTGGCGC TCAC GCGCCAC GGCCACAATGTATTT Rfer_3682 4102527 - 4102174 - | hypothetical protein Rfer_3683 4103368 - 4102532 - | metallophosphoesterase Rfer_3684 4104793 - 4103426 - | periplasmic sensor signal transduction histidine kinase TERM 3968 4103882 - 4103834 - G 72 -13.8 -2.57463 | gap 2, overlap 4103833 AACCCGCTGCAGAAT CGGCGCCAGTGCCAGCTGTGGCGC GAA GCG-CGCGGC-ACCACTGGCGCCG GCTCGCCCCAACTGG Rfer_3685 4105464 - 4104793 - | two component transcriptional regulator Rfer_3686 4105760 - 4105488 - | peptidase Rfer_3687 4106341 - 4105814 - | 17 kDa surface antigen Rfer_3688 4108723 - 4106480 - | ATP-dependent DNA helicase RecG TERM 3969 4107455 - 4107488 + g 73 -4.5 -4.62336 | gap 1, overlap 4107455 4107475 CTGTGCCACCCCAAA CC-GGTGCTGCTCGTC GAT GATGGCCAGTGCCAGG TTTTTGAACTGCACT TERM 3970 4108862 - 4108841 - H 100 -12.3 -6.10489 | opp_overlap 4108841 4108856 AAGGGCAAAAAAAAA CGCCCAATC TTTC GACTGGGCG TTTCCGGTTTAATAG TERM 3971 4108841 - 4108862 + H 74 -10.1 -3.73107 | opp_overlap 4108841, overlap 4108856 AAGGGCAAAAAAAAA CGCCCAATC TTTC GACTGGGCG TTTCCGGTTTAATAG TERM 3972 4111527 - 4111538 + H 77 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC TERM 3973 4114442 - 4114493 + H 74 -10.4 -3.60475 | opp_overlap 4114472 4114485, overlap 4114444 4114453 4114485 CAAATTATAGTACGC TTTTTTGCGTTTTTCTCAGAAATT TTTA AATTTCTGAGAAAAACGCCCAATC TTTCGACTGGGCGTT TERM 3974 4114444 - 4114491 + H 100 -17.4 -3.38046 | opp_overlap 4114472 4114485, overlap 4114442 4114453 4114485 AATTATAGTACGCTT TTTTGCGTTTTTCTCAGAAATT TTTA AATTTCTGAGAAAAACGCCCAA TCTTTCGACTGGGCG TERM 3975 4114453 - 4114463 + H 75 -4 -4.84529 | overlap 4114444 4114442 ACGCTTTTTTGCGTT TTTC TCA GAAA TTTTTAAATTTCTGA TERM 3976 4114485 - 4114506 + H 74 -10.1 -3.73107 | opp_overlap 4114485, overlap 4114444 4114442 4114500 AATTTCTGAGAAAAA CGCCCAATC TTTC GACTGGGCG TTTCCGGTTTAATAG TERM 3977 4114506 - 4114485 - H 100 -12.3 -4.84017 | opp_overlap 4114444 4114442 4114485 4114500 AATTTCTGAGAAAAA CGCCCAATC TTTC GACTGGGCG TTTCCGGTTTAATAG TERM 3978 4117171 - 4117182 + H 77 -7.2 -4.2354 | AGGATCTATTTCACT CCCC TCCC GGGG TTCTTTTCGCCTTTC TERM 3979 4120097 - 4120107 + H 75 -4 -4.84529 | overlap 4120101 ACGCTTTTTTGCGTT TTTC TCA GAAA TTTTTAAATTTCTGA TERM 3980 4120101 - 4120122 + H 100 -8.9 -5.3104 | overlap 4120097 TTTTTTGCGTTTTTC TCAGAAATT TTTA AATTTCTGA TTTTATTTTTCCTGC Rfer_3689 4120480 - 4121754 + | acyl-CoA dehydrogenase-like pgk 4123047 - 4121854 - | phosphoglycerate kinase Rfer_3691 4124286 - 4123159 - | aminotransferase, class V Rfer_3692 4125364 - 4124420 - | hypothetical protein TERM 3981 4124959 - 4124994 + g 100 -17.6 -3.54638 | gap 1, opp_overlap 4124936 4124935 4124938, overlap 4124960 4124962 4124989 4124990 CGTCGCACCACTCGA TGC-GACGCGCCAGCAG GCG CTGCTGGCGCGCCTGCG TTTCACGCAGCTTCT TERM 3982 4124960 - 4124993 + g 88 -18.9 -2.72461 | gap 1, opp_overlap 4124936 4124935 4124938, overlap 4124959 4124962 4124989 4124990 GTCGCACCACTCGAT GC-GACGCGCCAGCAG GCG CTGCTGGCGCGCCTGC GTTTCACGCAGCTTC TERM 3983 4124962 - 4124990 + g 95 -20.3 -2.64155 | opp_overlap 4124936 4124935 4124938, overlap 4124960 4124959 4124989 CGCACCACTCGATGC GACGCGCCAGCAG GCG CTGCTGGCGCGCC TGCGTTTCACGCAGC TERM 3984 4125138 - 4125111 - G 70 -4.9 -4.5442 | gap 2, overlap 4125112 4125116 GGTCGAATGACAAAA CCAATGCTGCGGC GCTG GCCGC-GC-TTGA ACTCGTAGGCCACCA Rfer_3693 4126109 - 4125375 - | phospholipid/glycerol acyltransferase TERM 3985 4125824 - 4125813 - G 71 -7.2 -4.1891 | overlap 4125795 GCGCTTGAAGACAAA CGCC AGCG GGCG CGGCATCAAGGTCGG Rfer_3694 4126754 - 4126158 - | histidinol-phosphate phosphatase TERM 3986 4126518 - 4126488 - G 81 -5.4 -4.77165 | gap 1, opp_overlap 4126499 GTGCGGACAATAAAA CACGG-CATCGAC CCGGGC GCCGACGGCCGCG AGCATTTTGTGCATC Rfer_3695 4129020 - 4126786 - | glycine--tRNA ligase TERM 3987 4126924 - 4126909 - G 74 -5.4 -4.57073 | gap 1 CACGCTGTCGAAAAA CGCATCC ACC GG-TGCG CGCAGTGCGGCCAGG TERM 3988 4127062 - 4127080 + g 70 -3.7 -4.62302 | GACCTCACTGACATG GGGGTCC ACGTC GGGCGCC TTTTTCAGAATGTTG TERM 3989 4128136 - 4128118 - G 82 -14.6 -3.15544 | CGGCACGTCGAGGAA CTGCGCGT CGA ACGCGCAG ACCAGCACGTTCGGG TERM 3990 4128625 - 4128610 - G 71 -5.4 -4.3739 | CAGGCTGTCATAAAA CAAGGC CTCG ACCTTG CCGTCCGGTGCTCGC glyQ 4130086 - 4129109 - | glycyl-tRNA synthetase subunit alpha Rfer_3697 4131807 - 4130083 - | apolipoprotein N-acyltransferase TERM 3991 4130300 - 4130277 - G 75 -8.1 -4.25104 | gap 1 CCTCCCCCACCAAAA CGCCG-CGCG TATTG CGCGCCAGCG TGTGCGTGACGCGGC TERM 3992 4130813 - 4130801 - G 76 -9.1 -4.08216 | TGACCGGTGGCAAAA CGCTG CTG CAGCG CACCCCAATACGCAG TERM 3993 4131761 - 4131720 - G 76 -12.4 -3.36327 | gap 3, opp_overlap 4131721, overlap 4131721 CGAGCCCAGCCAGAA CGGCCAGCGCC-ACGCGCCAC AGC GTGAC-CGCCGGCGCTGGC-G TCACTTGCAGGGCCG Rfer_3698 4132660 - 4131794 - | CBS Rfer_3699 4133489 - 4132749 - | GCN5-related N-acetyltransferase Rfer_3700 4133715 - 4134041 + | flagellar transcriptional activator FlhD Rfer_3701 4134054 - 4134599 + | transcriptional activator FlhC TERM 3994 4134644 - 4134628 - f 82 -11.5 -3.7791 | opp_overlap 4134628 TAAGCACTGATGAAA GGGCGCC TTT AGCGCCC TTTTCTTTTTCTTGG TERM 3995 4134628 - 4134644 + F 100 -10.8 -5.42605 | opp_overlap 4134628 TAAGCACTGATGAAA GGGCGC CTTTA GCGCCC TTTTCTTTTTCTTGG Rfer_3702 4134797 - 4135609 + | MotA/TolQ/ExbB proton channel TERM 3996 4135705 - 4135681 - g 85 -3.4 -5.31545 | overlap 4135682 AAGAAGATCAAAAAA GGCGGCCACG TCGTG CATGGCGGCG CCTGGAAGATTGCCT TERM 3997 4135734 - 4135752 + G 72 -3 -4.79223 | overlap 4135737 4135738 CTACGCCGACTTTGT GACGGCCA TGA TGGCGTTC TTTTTGCTGATGTGG TERM 3998 4135937 - 4135923 - g 84 -9.2 -4.46581 | overlap 4135913 4135924 4135925 GAAAAGCGGACAAAA CCGCCG CGG CGACGG CAGCGACCCCATGCA Rfer_3703 4135627 - 4136571 + | OmpA/MotB Rfer_3704 4136633 - 4137022 + | response regulator receiver domain-containing protein Rfer_3705 4137027 - 4137674 + | chemotaxis phosphatase, CheZ Rfer_3706 4137770 - 4138927 + | type III secretion exporter TERM 3999 4139029 - 4139060 + G 78 -2.9 -5.03314 | gap 1 ATTCTGGCCATGATG GTGTTGCCGCTGCC CCCGT GGCTGCT-CGACAC TTTTTTCACCATCAA TERM 4000 4139482 - 4139470 - g 73 -10.5 -3.69332 | overlap 4139461 GAAGAAGAGGCCAAA CGGCG CCG CGCCG AGGTGTCGGAAGAAG Rfer_3707 4138924 - 4141005 + | flagellar biosynthesis protein FlhA Rfer_3708 4141002 - 4142441 + | GTP-binding signal recognition particle TERM 4001 4142818 - 4142830 + G 84 -10.5 -4.26681 | overlap 4142824 GTCGTTGTCATCTAT GCCCG GGC CGGGC TTTTGGCTGATTTGT Rfer_3709 4142434 - 4143189 + | hypothetical protein Rfer_3710 4143189 - 4143905 + | sigma 28 (flagella/sporulation) Rfer_3711 4144392 - 4144009 - | hypothetical protein Rfer_3712 4144749 - 4144423 - | anti-sigma-28 factor, FlgM Rfer_3713 4145586 - 4144846 - | flageller protein FlgA TERM 4002 4145533 - 4145521 - G 78 -6.9 -4.60041 | overlap 4145523 4145524 ACCCACGGTGAAAAA GACGG CGC CCGCC AGCCCCACGGTCTGC Rfer_3714 4145768 - 4146220 + | flagellar basal-body rod protein FlgB TERM 4003 4146493 - 4146514 + G 75 -13.7 -2.87564 | opp_overlap 4146484 GCACAACCCCAGCCA CCCGTCGGC TGAC GCCGATGGG TATGTGACGCAATCG Rfer_3715 4146248 - 4146652 + | flagellar basal-body rod protein FlgC TERM 4004 4146753 - 4146785 + G 82 -11.2 -3.88291 | gap 1 TCCACCAGCACCACG GCGG-CCAGCGACGC CAAC GCGTCGCAAGACCGC TTTCTGAAACTGCTG Rfer_3716 4146672 - 4147343 + | flagellar hook capping protein Rfer_3717 4147374 - 4148588 + | hypothetical protein TERM 4005 4149343 - 4149317 - g 74 -10.9 -3.53012 | gap 1 TGCGCCTGCTGCAAA CCGCCGAATCGA ATGA CCG-TTCGGCGG CCCAACTGCTGGGCC Rfer_3718 4148629 - 4149369 + | flagellar basal-body rod FlgF TERM 4006 4149557 - 4149547 - g 71 -6.8 -4.2828 | CCTGATGTACCAAAA CCTG CGT CAGG CGGGCTCCAACAGCT Rfer_3719 4149404 - 4150186 + | flagellar basal-body rod FlgG Rfer_3720 4150195 - 4150926 + | flagellar L-ring protein flgI 4150961 - 4152106 + | flagellar basal body P-ring protein TERM 4007 4152328 - 4152342 + G 73 -10 -3.60296 | GACCTGGGTACCGAT CTGCTG GAC CAGCAG TTTGCGGTGCAGATG TERM 4008 4152948 - 4152931 - g 70 -4.8 -4.56775 | AGCGGTCTGCAAAAA GCCGGT TACGCC ACCGAC CCGCATTACGCGGCC Rfer_3722 4152106 - 4153032 + | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase Rfer_3723 4153029 - 4154963 + | flagellar hook-associated protein TERM 4009 4155135 - 4155110 - g 77 -3.9 -5.00884 | gap 1, overlap 4155111 ACTTCCGGCAAAAAA GTGGTGCGCGCC AGC GACG-ACCCCAC CGGCGCCGCCCAGGC Rfer_3724 4154990 - 4156222 + | flagellin-like Rfer_3725 4157716 - 4156271 - | GntR family transcriptional regulator TERM 4010 4156391 - 4156379 - G 76 -9.1 -4.0031 | overlap 4156376 ACTGGCATGAAACAA GGCAC CTG GTGCC AGCAGATAACCCGCG TERM 4011 4156516 - 4156465 - G 89 -10 -4.67353 | gap 1, opp_overlap 4156501 4156509, overlap 4156467 CGACCCAGCCAAAAA GCCCGGCCGGTGGC-GCGGCAAA GGTGCAG CCCGCCGCCAGCGCCAGCCGGGC GCTTCGCCCCCGGGC TERM 4012 4156577 - 4156603 + g 84 -8.7 -4.56597 | overlap 4156573 ATGGCGGCGTAACTG GCCCTGGTC AATACACCA GGCCAGGGC TTTTTCGAGCAGCGC Rfer_3726 4157850 - 4158461 + | hypothetical protein TERM 4013 4158492 - 4158474 - f 83 -6 -4.8543 | opp_overlap 4158478 TAACGCTGACAAAAA GGACTTCA ACA TGAATTCC ATGGGTCTGAAAACA Rfer_3727 4158484 - 4159215 + | aspartate racemase TERM 4014 4159324 - 4159341 + G 85 -6.9 -4.82901 | TTGGCAGCGCCGCGG CGCCGCA GATG TCCGGCG TTTTTGTGGCCGCCG TERM 4015 4159970 - 4159987 + G 85 -6.3 -5.03715 | gap 1, overlap 4159970 GGTGCGGGTCAGCCA GG-TGCAG CTG CTGCAACC TTTTTTGAGCATGGT Rfer_3728 4159212 - 4160159 + | hypothetical protein Rfer_3729 4160156 - 4161418 + | aminotransferase, class I and II TERM 4016 4161739 - 4161750 + G 70 -3.6 -4.63184 | overlap 4161736 ACGCTCAACCGCGCG GGTG GTGC CGCC TTTTTGCAGTGGATT Rfer_3730 4161421 - 4162038 + | glutathione S-transferase-like TERM 4017 4162199 - 4162209 + G 78 -2.4 -5.14563 | CACTGGACCAATCTG TCGG AAA CCGC TTTTTTGCTGCCGCC TERM 4018 4162982 - 4162954 - g 70 -10.1 -3.43446 | overlap 4162952 GCACATTGAACAAGA CGCCTCCGGCCAA GTC TGGGTCGGTGGCG AATCCGTCACCTGCA Rfer_3731 4162064 - 4163020 + | phenazine biosynthesis PhzC/PhzF protein Rfer_3732 4163093 - 4163761 + | phosphoglycerate mutase Rfer_3733 4164364 - 4163882 - | hypothetical protein TERM 4019 4163954 - 4163926 - G 70 -4.5 -4.4767 | gap 1 CCAGCCACCATAAAA GCGCTACGCCCC GGTGAT GGAGAGT-GCGC GGATCCTTGCAGGCC TERM 4020 4164406 - 4164393 - R 100 -8.1 -6.09888 | opp_overlap 4164393 TTTGAACAAAAAAAA GACCC CGAA GGGTC TTTTCCGCCAAGCGA TERM 4021 4164393 - 4164406 + r 77 -8.1 -4.07568 | opp_overlap 4164393 TTTGAACAAAAAAAA GACCC CGAA GGGTC TTTTCCGCCAAGCGA Rfer_3734 4164775 - 4164440 - | histone protein Rfer_3735 4167271 - 4165088 - | twin-arginine translocation pathway signal TERM 4022 4166449 - 4166430 - G 71 -7.8 -4.11484 | opp_overlap 4166442 CTGAAGCTCTCAAAA GCGAGGCA TCCG TGCATCGC GCCGGTCCAGTTGTC Rfer_3736 4169737 - 4167554 - | twin-arginine translocation pathway signal Rfer_3737 4170718 - 4169954 - | haloacid dehalogenase-like hydrolase TERM 4023 4171227 - 4171246 + G 85 -9.3 -4.69214 | TGCGATGGAGTTCGC CCGAAGC CAGAAC GCTTCGG TTTATTTGTTGCCTG TERM 4024 4171558 - 4171509 - g 76 -12.1 -3.33261 | overlap 4171510 CGCCAAGCTGGACAA GGTGACGCGCGTCATCACGGATG CAGG CATCGACCAGGACGCGCGTCACG AACTCGAGGATTTGG TERM 4025 4171557 - 4171510 - g 78 -15.6 -2.59742 | overlap 4171509 GCCAAGCTGGACAAG GTGACGCGCGTCATCACGGATG CAGG CATCGACCAGGACGCGCGTCAC GAACTCGAGGATTTG Rfer_3738 4170817 - 4171617 + | DeoR family transcriptional regulator Rfer_3739 4172197 - 4171754 - | cyanate hydratase TERM 4026 4172269 - 4172247 - R 75 -4.1 -4.91657 | gap 1 AATGAAGAAAAGAAA GTCAGTGCGC AATG GCGCG-TGAC ACCAGAAAGTCGACC Rfer_3740 4173111 - 4172248 - | ABC transporter related TERM 4027 4172618 - 4172599 - G 75 -7.8 -4.18018 | gap 1, opp_overlap 4172600 4172602, overlap 4172600 GGGGCTGATGCAAAA GGCGCGGGC AAT GCCCAC-CC GCTGCTTCATGCCAC Rfer_3741 4173967 - 4173101 - | nitrate transport permease Rfer_3742 4175372 - 4173969 - | twin-arginine translocation pathway signal TERM 4028 4174060 - 4174073 + g 74 -3.7 -4.72986 | TTGAACTTGGGGTAC GCGCC CTCG GGCAC TTTTTGATCCAGCTC TERM 4029 4175539 - 4175577 + r 70 -3.1 -4.72986 | gap 2, overlap 4175541 4175543 4175564 CGCAAGGGCGTGCTG CGGCTGTGCCGCTGGGCGT ACA GCGCC-AGCTCCACA-TCG TTTTTGGTGCCGGTC Rfer_3743 4176197 - 4175520 - | two component LuxR family transcriptional regulator TERM 4030 4175954 - 4175938 - G 72 -10.9 -3.28712 | TGTTTTTCCGGATAA GTGCTGA GCA TCAGCAC CGGCAGGGTTGGGTG Rfer_3744 4177437 - 4176199 - | PAS/PAC sensor signal transduction histidine kinase TERM 4031 4177026 - 4176997 - G 73 -9.3 -3.87815 | gap 1 GGTGATGTCCACAAA GGTGATCACCGCGC CCA GCACCGTG-TCACC GTCCATCAGCGGGTA Rfer_3745 4178406 - 4177510 - | hypothetical protein Rfer_3746 4179312 - 4178452 - | creatininase TERM 4032 4178939 - 4178955 + g 73 -4.4 -4.65895 | opp_overlap 4178949 ACGTTGCCGCCATGA CTGTTG AAGAG CAGCAG TTTTTGGATACCCGC Rfer_3747 4179687 - 4179331 - | alkylphosphonate utilization operon protein PhnA Rfer_3748 4179990 - 4180976 + | magnesium and cobalt transport protein CorA Rfer_3749 4182074 - 4181010 - | putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase TERM 4033 4181960 - 4181935 - G 72 -12.5 -3.10056 | ACCATGGACCGAATA CCCTCGGCCAC CTCG GCGGCCGAGGT AAAAGGCAAATACTC Rfer_3750 4182754 - 4182071 - | L-fuculose-phosphate aldolase TERM 4034 4182687 - 4182713 + g 74 -7.3 -4.30576 | gap 1, overlap 4182680 4182707 ACCACCAGTCGCCGG GCTGC-CTCGGC CATA GTTGAGCGCAGC TTTTGATCCTGCGCA Rfer_3751 4183641 - 4182754 - | 5'-methylthioadenosine phosphorylase TERM 4035 4183024 - 4183003 - G 86 -12.3 -3.95584 | GTGCCAGCAATCAAA GTCGGTCAC CATG GCGACCGAC GCATAGCACAGCTCG Rfer_3752 4185325 - 4183652 - | AMP-dependent synthetase and ligase TERM 4036 4185060 - 4185046 - G 81 -5.6 -4.7254 | overlap 4185032 4185048 AGCCGGCACGAAAAA TGCCGG CCA CCGCCA CCGGATACTGCAGCA TERM 4037 4185419 - 4185446 + r 72 -12.1 -2.63723 | gap 1, opp_overlap 4185419, overlap 4185418 TCTACAAAGGAAAAA GTGGGCTCAGCT GACAG AGCTG-GCCCAC CTTGATTGATCGGGA TERM 4038 4185446 - 4185419 - R 100 -12.1 -5.04601 | gap 1, opp_overlap 4185419 4185418 TCTACAAAGGAAAAA GTGGGCTCAGCT GACAG AGCTG-GCCCAC CTTGATTGATCGGGA Rfer_3753 4186919 - 4185504 - | NAD(P) transhydrogenase, beta subunit TERM 4039 4186900 - 4186877 - G 74 -3.8 -4.81852 | gap 1, overlap 4186878 4186893 TCAGAATGAACAAAA TGGTCGCGCCA ATG TAG-GCGACCG TGGCCAAACTCGAAT pntA 4188584 - 4186935 - | NAD(P) transhydrogenase subunit alpha TERM 4040 4187304 - 4187330 + g 77 -3.7 -5.00616 | gap 2, overlap 4187310 GCCCGCAGGCATGGG GGCACTGGGCTCA CCA TG-GCCCT-TGCC TTTTTTGGCCACGGG TERM 4041 4188039 - 4188003 - G 71 -7.1 -4.1711 | opp_overlap 4188008 AGCACCCGCAATAAA GACCTTGGCTGGCGGCA CCT TGCCCGCAGCCGTGATC TGACCGCTGAAGAAG TERM 4042 4188074 - 4188054 - G 82 -12.6 -3.62597 | overlap 4188064 CTGACCGCTGAAGAA GCGGCCAA AAGCG TTGGCCGC CTCAATGACGGCGCG Rfer_3755 4188773 - 4189246 + | NUDIX hydrolase TERM 4043 4189684 - 4189672 - g 77 -3.3 -5.00616 | overlap 4189673 TGGGGGCGCAAAAAA TCGCC ACC GGCCA CTACGCCCGGGTCCG trmU 4189299 - 4190453 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Rfer_3757 4190827 - 4190537 - | hypothetical protein TERM 4044 4190886 - 4190898 + r 83 -7.7 -4.65895 | overlap 4190869 TTTTGCCAATCTTAG TTGGC ACA GCCAA TTTTTGACTCGGGCA Rfer_3758 4191106 - 4190882 - | hypothetical protein Rfer_3759 4192440 - 4191154 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 4045 4191209 - 4191222 + g 84 -3.7 -5.27779 | TATTTTTCATAGATC GGCTC GGAG GTGCC TTTTTTGATCTTGCG TERM 4046 4192092 - 4192063 - G 70 -10.6 -3.55761 | CACCGAGTGGGTAAA GCCACCCCCGCC GGATTT GACGGGGCCGGC TCCCGGCACCTCGCT Rfer_3760 4195803 - 4192474 - | acriflavin resistance protein TERM 4047 4192665 - 4192648 - G 77 -4 -4.93365 | overlap 4192650 GTCCAGAATGAAAAA GGCGCC GATCAT GGCGGC CAGGCCCGTTAACGC TERM 4048 4193474 - 4193500 + g 71 -5.7 -4.4078 | gap 1 TCGGCACGCTGGCGC CGCACCCGCAGG TAGG CCCGCGGC-GCG TTTTCCTTGAGCGAG TERM 4049 4195251 - 4195265 + g 100 -11.4 -5.27938 | TGGTATGCACCTCAC GCGTGC CTG GCACGC TTTTTATTTCAGCCT Rfer_3761 4196899 - 4195805 - | secretion protein HlyD TERM 4050 4196996 - 4196981 - R 100 -6 -5.81412 | opp_overlap 4196982, overlap 4196982 TCCACCCAAAAAAAA GGGCCC CAGC GGGCCT TTTTGCTTAACCGAT TERM 4051 4196982 - 4196995 + r 100 -9.5 -4.8622 | opp_overlap 4196981 4196982 CCACCCAAAAAAAAG GGCCC CAGC GGGCC TTTTTGCTTAACCGA TERM 4052 4196995 - 4196982 - R 83 -9.5 -4.07763 | opp_overlap 4196982, overlap 4196981 CCACCCAAAAAAAAG GGCCC CAGC GGGCC TTTTTGCTTAACCGA Rfer_3762 4198870 - 4197041 - | Type I secretion outer membrane protein, TolC TERM 4053 4197840 - 4197862 + g 72 -2.6 -4.72986 | opp_overlap 4197832 TAGGCAATCGACAGG GTCTGGCG CACATCA CGACAGGC TTTTTCCTGCAGATC TERM 4054 4198693 - 4198683 - G 75 -2.4 -5.00884 | AGTTGCGGCAAAAAA CCGC CAC GCGC AACATCACGCTCATT TERM 4055 4199158 - 4199107 - g 77 -7.9 -4.38712 | CTGATTTCGATAAAA CCCAAGC-CTTGGCGCAGCAGCGTT ACGG AGC-CCGCGGCGCCGAGAGCGTGGG CGCCTGGCGGCGGTT Rfer_3763 4198980 - 4199672 + | hypothetical protein TERM 4056 4199861 - 4199828 - g 89 -10.3 -4.62069 | opp_overlap 4199831, overlap 4199830 4199831 GTTGCAGGTCAAAAA CATCGACAACGCCAA TGCG CTGGCCTTGTCGTTG TCGCAACTGCCTAAG TERM 4057 4199865 - 4199830 - g 78 -10.4 -3.92746 | opp_overlap 4199831, overlap 4199828 4199831 TGCAGGTCAAAAACA TCGACAACGCCAATGC GCTG GCCTTGTCGTTGTCGC AACTGCCTAAGGATC TERM 4058 4199864 - 4199831 - g 75 -13.9 -2.95166 | opp_overlap 4199831, overlap 4199828 4199830 GCAGGTCAAAAACAT CGACAACGCCAATGC GCTG GCCTTGTCGTTGTCG CAACTGCCTAAGGAT TERM 4059 4200899 - 4200868 - g 72 -13 -3.02511 | gap 1, overlap 4200837 4200834 CCCAGGGTTCGAACA GCTGCTAC-GCCGGC GAG GCCGACAGTGGCAGC ACGGCACGGCCCGCC TERM 4060 4200948 - 4200970 + G 82 -11.2 -3.91412 | opp_overlap 4200921, overlap 4200950 TTGACCGACGCCGTC GCCGGCGGCA AGC TGCGGCTGGC TTTCTACCGTGTGGT Rfer_3764 4199703 - 4201616 + | diguanylate cyclase/phosphodiesterase TERM 4061 4202110 - 4202060 - g 78 -4.6 -4.83615 | gap 3, opp_overlap 4202080, overlap 4202061 4202063 CAGCTGCCAGAAAAA GC-ACCGCCCAGCCTCTTCA-GCGG CCTG CCGCCCGACTTGGC-GGGCGGCAGC CGTCTGTCCATTGAA TERM 4062 4202080 - 4202112 + G 86 -18.5 -2.94912 | gap 1, opp_overlap 4202063 4202061 4202060 GCCCAGCCTCTTCAG CGGCCTGCCGCCCG ACTTGG CGGGCGGCAG-CCG TCTGTCCATTGAACA TERM 4063 4202383 - 4202353 - g 71 -6.7 -4.1899 | gap 1, opp_overlap 4202361 TGACGCCACCCAAAA CCTGCGC-GGCGGC ATGC GCTACCTGCGCTGG CTGCTGTCGTACTAC Rfer_3765 4201613 - 4202593 + | lytic transglycosylase, catalytic Rfer_3766 4206122 - 4202622 - | hemolysin-type calcium-binding protein TERM 4064 4203258 - 4203213 - G 70 -9.8 -3.53444 | gap 3 GGATGTGCCGTCAAA GCTGGCATTAGGCGTGCTGCCGG ATG CCGCC-G-ACGCC-ACTGCCAGC GTGCTACTGGAGAAG TERM 4065 4206263 - 4206276 + r 70 -9.5 -3.34344 | opp_overlap 4206263 CCTCGCATTAAAAAA GGCCC ATGT GGGCC TTAATTGAGGGGTGC TERM 4066 4206276 - 4206263 - R 100 -9.5 -5.14563 | opp_overlap 4206263 CCTCGCATTAAAAAA GGCCC ATGT GGGCC TTAATTGAGGGGTGC Rfer_3767 4206568 - 4206347 - | hypothetical protein TERM 4067 4206542 - 4206511 - G 71 -7.8 -4.09739 | TCAAGTCTTCTAAAA CGCGGGCCAGCCCG GTGT CGGTCTGGCTCAGG GCGTTGGCCTGGTCG Rfer_3768 4207260 - 4206565 - | LuxR family transcriptional regulator TERM 4068 4207004 - 4206980 - G 79 -15.7 -2.71364 | opp_overlap 4206978, overlap 4206949 GCATGGGTGTAACCA CGCGCGCCCTC GTT GAGGGCACGCA GACCTTCATCTGATT Rfer_3769 4208672 - 4207257 - | Type I secretion membrane fusion protein, HlyD TERM 4069 4208286 - 4208268 - G 70 -10.2 -3.53745 | opp_overlap 4208264, overlap 4208264 CATATTGGAAACGAA GCGGGTGG GAT CCACGCGC AGCATCAGTTGGCCG Rfer_3770 4210831 - 4208672 - | ABC transporter related TERM 4070 4209677 - 4209714 + g 80 -4 -5.12707 | gap 2, opp_overlap 4209677 4209678, overlap 4209694 GGTACTGGAGAGCAA GCGCAG-C-TGCGCGCCC ACGC GGGCCAGCAGGGCGGCGC TTTTTTCCCATTTGC TERM 4071 4210246 - 4210226 - G 79 -12.6 -3.55071 | CCACAGGGTTTCAAA CGCGTGGT TGGGC ACCACGCG GTCATACACATTCAT Rfer_3771 4212062 - 4211244 - | integral membrane protein TERM 4072 4211833 - 4211823 - G 70 -3.2 -4.59773 | GCCCATGGCCAAAAA TGGC CCC ACCA GCAGGCAACCAGAAA Rfer_3772 4212598 - 4212095 - | single-strand binding protein TERM 4073 4212361 - 4212385 + g 80 -3.6 -5.06451 | gap 1, opp_overlap 4212374 TACGCGTCTTGATGC GGCC-TTCC ACATAGAC GGAACGGCC TTTTTTCAGGTACTG TERM 4074 4212447 - 4212431 - G 75 -2.9 -5.0133 | overlap 4212432 CAGTTTGCCAAAAAA GGTGACA CGG TGCCACT CGGTCTCCTCGACCA Rfer_3773 4213903 - 4212653 - | major facilitator transporter TERM 4075 4213599 - 4213587 - G 71 -5.5 -4.3739 | overlap 4213588 CAGGCGGCGACAAAA CTGCC GAC GGCAA ACAGCAGCAAGCCGA TERM 4076 4213967 - 4213951 - H 89 -9.3 -4.5442 | TGGCTAACTACAAAA CGGGGCC ATT GTCCCCG ATATGCGCCCGCTGC TERM 4077 4215270 - 4215284 + G 73 -10 -3.64703 | overlap 4215265 CTGCCGCCAACGGTG CAGCAC GCC GTGCTG TTTGGCTCGGGCGAG TERM 4078 4216168 - 4216128 - g 82 -12.4 -3.69354 | gap 1, overlap 4216121 4216129 GCCGACAAGCCCAAA GCGCACCGCTTCGC-GCCG AGTC CGGCGGCGCTGCGCCGCGC CGAGCGCGAAGCCCT Rfer_3774 4214052 - 4217210 + | excinuclease ABC, A subunit Rfer_3775 4218925 - 4217231 - | AMP-dependent synthetase and ligase pyrF 4220031 - 4219168 - | orotidine 5'-phosphate decarboxylase TERM 4079 4219689 - 4219664 - G 71 -6.2 -4.42788 | gap 2, opp_overlap 4219679 TCGAAGCCCATAAAA GGCG-AGA-GCG TGAC CGCGTCTGCGCC ATAGCGCTCAAACGC TERM 4080 4219802 - 4219761 - G 86 -14.5 -3.35679 | gap 1 GCTTGGCATCCAGAA TGACCGGC-ACATGCGGCGC CGC GCGACGCATGTGGGCGATCA AGCGCTCCAATTGGG Rfer_3777 4222319 - 4220151 - | DNA polymerase III, epsilon subunit TERM 4081 4220454 - 4220442 - G 70 -4.1 -4.59773 | CTTGAGCTGCAAAAA CTTCA TGT CGAAG GCCGCATTGTGAGCC TERM 4082 4220542 - 4220493 - G 70 -9.9 -3.53811 | gap 1, overlap 4220494 4220502 CGTATCCTGGGCAAA GGCGTGAAAGGCCGGCAGCACCTC ACC AATGCGCGGCTGGCCTATCAC-CC GGTCCTGCGTAATGC Rfer_3778 4222690 - 4222316 - | response regulator receiver domain-containing protein Rfer_3779 4225449 - 4222687 - | periplasmic sensor signal transduction histidine kinase TERM 4083 4223307 - 4223290 - G 86 -12.7 -3.88559 | opp_overlap 4223286 AATGATCTCGATAAA CTGGCGC CGCT GCGCCAG GGCAATTCTGGGATC Rfer_3780 4225664 - 4225452 - | hypothetical protein TERM 4084 4225699 - 4225718 + H 77 -7.8 -4.30576 | overlap 4225693 4225700 GTTCTGCGTCGGTTG CGCCAACC CTGT GGTTGGCA TTTTCCTCCTCGCAC TERM 4085 4225700 - 4225717 + H 74 -11.3 -3.18024 | overlap 4225693 4225699 TTCTGCGTCGGTTGC GCCAACC CTGT GGTTGGC ATTTTCCTCCTCGCA TERM 4086 4225917 - 4225930 + H 78 -2.4 -5.15969 | AAGACAATCCCCCTT CTTG AATTTG CAAG TTTTTTACATTACCA Rfer_3781 4225961 - 4226269 + | hypothetical protein TERM 4087 4226524 - 4226546 + G 73 -10.5 -3.6239 | overlap 4226519 AACGGACTGGCGATT GCGGGCGAC TACAT GTCGGCCGC TTCGTTTCTGGGTAT TERM 4088 4227047 - 4227031 - g 70 -4.3 -4.46112 | overlap 4227034 GTGCACTCAAAGAAA GACGCCA TCA TGGCCCC GGGTGGTCTGATCAA Rfer_3782 4226266 - 4227957 + | SSS family solute/sodium (Na+) symporter TERM 4089 4227965 - 4227997 + F 74 -7.2 -4.09685 | gap 1, overlap 4227927 4227967 4227970 GCCATTGATACTGGC GTTCATCGGATGATT TTCA ATTCATCCGAT-AAC TTTTGAGGACTGCCG TERM 4090 4228004 - 4228030 + F 100 -15.9 -5.63103 | TCCGATAACTTTTGA GGACTGCCGGC GCCAA GCTGGCAGTCC TTTTTTTCATTGAGC TERM 4091 4228573 - 4228545 - g 86 -14.5 -3.29958 | overlap 4228537 4228543 GCAACAAGACGAAGA CGCCAGCAGCCTG GTG CTGGGTGCTGGCG AAACGCTGGGCTGGC TERM 4092 4228989 - 4229011 + G 73 -14.2 -2.73364 | overlap 4228987 GCAACCGTTGGCAGT GCGCGAAGTG GCG CACTTTGCGC TGATTACACTGCCGC TERM 4093 4229773 - 4229783 + G 70 -4.6 -4.48743 | overlap 4229769 4229776 AATCAGTTCAGGGAG CCTG CCA CGGG TTTCTTTGGCGTTTT Rfer_3783 4228363 - 4230174 + | cyclic nucleotide-binding domain-containing protein TERM 4094 4230396 - 4230409 + G 71 -9.5 -3.78953 | opp_overlap 4230392, overlap 4230392 CCAGGCGAATATGCC GCGCC ACGT GGCGC TTTGCTCATGGCCAT Rfer_3784 4230240 - 4230728 + | GCN5-related N-acetyltransferase TERM 4095 4230756 - 4230730 - T 100 -15.2 -3.98484 | opp_overlap 4230730 AAGCCAATTTATAAA GCCCGCCACACA TGT TGTATGGCAGGC TTGTCGATTCAGGCA TERM 4096 4230730 - 4230756 + T 73 -10.8 -3.41878 | opp_overlap 4230730 AAGCCAATTTATAAA GCCCGCCACACA TGT TGTATGGCAGGC TTGTCGATTCAGGCA Rfer_3785 4231328 - 4230777 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 4097 4231039 - 4231027 - G 74 -5.5 -4.4767 | GCACCCATGACAAAA GCATC ATT GACGC TGACGCACCAGATTT TERM 4098 4231386 - 4231356 - R 100 -21.4 -4.44187 | opp_overlap 4231362, overlap 4231362 ATAGAGAAATACAAA TAGAAACGGCTCAC ATT GTGAGCCGTTTCTA CGAACCTTGCAGTCT TERM 4099 4231362 - 4231380 + r 100 -14.6 -3.86822 | opp_overlap 4231356 4231362 AAATACAAATAGAAA CGGCTCAC ATT GTGAGCCG TTTCTACGAACCTTG TERM 4100 4231380 - 4231362 - R 100 -14.6 -4.47049 | opp_overlap 4231362, overlap 4231356 AAATACAAATAGAAA CGGCTCAC ATT GTGAGCCG TTTCTACGAACCTTG TERM 4101 4231414 - 4231391 - R 76 -11.8 -3.14211 | AGCCGTTTCTACGAA CCTTGCAGTC TCAG GACTGCAAAG GCTTAAACCACAGCC Rfer_3786 4231686 - 4231417 - | ribosomal protein S17 Rfer_3787 4231903 - 4231697 - | ribosomal protein L29 rplP 4232335 - 4231919 - | 50S ribosomal protein L16 TERM 4102 4232276 - 4232252 - G 78 -10.8 -3.89412 | gap 1 ACCGAAATCACCAAA CGCAAC-CGAG CTAC CTCGAGTTGCG ATACCGGTGTTACGG rpsC 4233234 - 4232338 - | 30S ribosomal protein S3 TERM 4103 4233074 - 4233088 + g 78 -7 -4.66833 | opp_overlap 4233074 4233072 CGCTCGATCAATACA CGCGAC ACA GACGCG TTTTTCAGCTTGGCC Rfer_3790 4233580 - 4233251 - | ribosomal protein L22 Rfer_3791 4233869 - 4233591 - | ribosomal protein S19 rplB 4234705 - 4233881 - | 50S ribosomal protein L2 Rfer_3793 4235034 - 4234708 - | ribosomal protein L25/L23 rplD 4235651 - 4235031 - | 50S ribosomal protein L4 TERM 4104 4235450 - 4235465 + g 71 -6.2 -4.33621 | GAGCGCGACCCGTAC CCTTTT GCTT AAAAGG TTTCTTGGTTGAGTG TERM 4105 4235572 - 4235539 - G 79 -12.5 -3.53444 | opp_overlap 4235543 4235547, overlap 4235540 GCATTGGCCTGGAAA GCAACGACGATCTGG TGCA CCAGATCTTCGTTGT AAGCGCGACCGAACA TERM 4106 4235571 - 4235540 - G 79 -16 -2.71924 | opp_overlap 4235543 4235547, overlap 4235539 CATTGGCCTGGAAAG CAACGACGATCTGG TGCA CCAGATCTTCGTTG TAAGCGCGACCGAAC TERM 4107 4235543 - 4235568 + g 72 -11.9 -3.28712 | opp_overlap 4235540 4235539, overlap 4235547 TGGCCTGGAAAGCAA CGACGATCTGG TGCA CCAGATCTTCG TTGTAAGCGCGACCG TERM 4108 4235547 - 4235564 + g 70 -9.9 -3.44146 | opp_overlap 4235540 4235539, overlap 4235543 CTGGAAAGCAACGAC GATCTGG TGCA CCAGATC TTCGTTGTAAGCGCG Rfer_3795 4236337 - 4235651 - | ribosomal protein L3 TERM 4109 4236188 - 4236170 - G 80 -11 -3.72576 | opp_overlap 4236184 4236184 4236185 TTTGCGCGCACCAAA CGTCACCT GCA AGGCGACG TAGCCGTCATTCTCT TERM 4110 4236442 - 4236411 - R 71 -4.4 -4.65078 | gap 1, opp_overlap 4236417 AGACTGTTAATAAAA CTGCGCT-GTCATGC CTG GCATTTCCAACGCAG CCTAATAGTATATTC rpsJ 4236850 - 4236536 - | 30S ribosomal protein S10 Rfer_3797 4238049 - 4236859 - | elongation factor Tu Rfer_3798 4240332 - 4238230 - | translation elongation factor G TERM 4111 4239408 - 4239424 + g 74 -5.7 -4.44797 | TCTCGGTGTCGTTAG CCTGGCG TAC CACCGGG TTTTCGTCTTCGTCC TERM 4112 4239490 - 4239513 + g 76 -6.6 -4.44667 | opp_overlap 4239489 4239486 CATGAATTCAACCAC GGCATCCAGC ATGC GCTGCACGCC TTTGTTCTTGAACGC TERM 4113 4240404 - 4240364 - R 74 -10.7 -3.5944 | gap 2 ATCTATATCTTCAAA CT-GCTAC-CCCCAAGGAT TTTCG ATCCTTGAGGCGTAGCGAG CGACTTTCAGACTGG TERM 4114 4240465 - 4240445 - R 77 -8.2 -4.13767 | overlap 4240458 GTTGGCAGTGCAAAA GGCGCGAC AAGAA GCCGCACC GACGCATGAAAATCG Rfer_3799 4240969 - 4240496 - | 30S ribosomal protein S7 TERM 4115 4240847 - 4240861 + g 85 -5.6 -5.03145 | opp_overlap 4240846 4240847 CGCACCATAAATAAT GCGTTC GGC GATCGC TTTTTTGCCGCCTTC rpsL 4241496 - 4241119 - | 30S ribosomal protein S12 Rfer_3801 4242869 - 4241685 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 4116 4241854 - 4241866 + g 85 -9.1 -4.67038 | ACCAGTGGGTCCGAG CGCAG CAC CTGCG TTTTAATTTTGCCCG TERM 4117 4242988 - 4243032 + r 73 -5.1 -4.62069 | gap 3, opp_overlap 4242971 CTTAAACAATCTTAG CGGCCCAGCGTCGGCGGGATGA GAAG TCGTTCCACC-AC-CT-GGCCG TTTTTCAAGTGCGAC Rfer_3802 4243367 - 4242984 - | ferredoxin-like TERM 4118 4243248 - 4243263 + g 70 -4.6 -4.56702 | overlap 4243216 CTGATACTGGGCACA GCACGG TTCG CCGTTC TTTCTTTCATTGAGG Rfer_3803 4244472 - 4243378 - | VanZ like protein Rfer_3804 4244917 - 4244489 - | hypothetical protein TERM 4119 4245029 - 4245010 - H 100 -10.7 -5.82316 | ATCAGGCAAAAAAAA CCCCAGC TCGAGG GCTGGGG TGGTAAGCCTATTTG TERM 4120 4245104 - 4245080 - H 84 -9.2 -4.2828 | gap 1, opp_overlap 4245079 GCTCAGGGAGGAAAA GCGGGAGGCGG CGAA CCGCC-CACGC GTAATTTAACAAAAA Rfer_3805 4245200 - 4246216 + | delta-aminolevulinic acid dehydratase TERM 4121 4247444 - 4247468 + G 72 -2.7 -4.82901 | overlap 4247426 4247428 4247446 CATGGTGGCGATGGG CTTCACCACCG TGA CCTTGGTGATG TTTTTCTGGCGCAAA Rfer_3806 4246272 - 4247510 + | Mg2+ transporter protein, CorA-like Rfer_3807 4247635 - 4248402 + | extracellular solute-binding protein Rfer_3808 4248424 - 4249191 + | amino acid ABC transporter permease Rfer_3809 4249178 - 4249900 + | ABC transporter related Rfer_3810 4250618 - 4249926 - | carboxymethylenebutenolidase TERM 4122 4250232 - 4250214 - G 76 -12.4 -3.3344 | ACGCAAGCCCGACAA CTGGCAGG CCG CCCGCCAG GCCAGCAGGCCGCCC TERM 4123 4251161 - 4251125 - g 74 -12.9 -3.21416 | overlap 4251137 CATCGGCATGATCAA CGCCACCAGCAAGGCGC AGG GCGCCGCACTGCTGACG GCGGCCAATCCGGCG TERM 4124 4251290 - 4251275 - g 74 -3.3 -4.79667 | AAAATCGATCAAAAA CAACA CCCAAT TGTTG AACAGCTTTGGCGCC Rfer_3811 4250838 - 4251419 + | hypothetical protein Rfer_3812 4251486 - 4252172 + | activator of osmoprotectant transporter Rfer_3813 4252242 - 4252862 + | multiple antibiotic resistance (MarC)-related proteins Rfer_3814 4259163 - 4252867 - | excinuclease ABC, A subunit TERM 4125 4257629 - 4257617 - G 80 -10.5 -4.128 | opp_overlap 4257616 4257614 4257617 ACCGCCACAGACAAA CCGGG TTC CCCGG CTGTTTCCGGCGCGG TERM 4126 4258291 - 4258270 - G 81 -4.3 -4.88918 | overlap 4258273 GGAGTTGAAAGAAAA CATCGACGC GATC GGGTCGGTG TAGCGCAAGTTGCTC TERM 4127 4258551 - 4258567 + g 74 -3.5 -4.82901 | overlap 4258547 4258553 4258561 TGGATGCCGGTTCCG GGGCGGC TTT GCCGGGC TTTTTGTGACCGACA TERM 4128 4259318 - 4259302 - H 90 -8 -4.68994 | opp_overlap 4259301 ATGACCATCCAAAAA TCCGGA TACAG TCCGGA CTGACTTACAAGGAT Rfer_3815 4259340 - 4260446 + | extracellular ligand-binding receptor Rfer_3816 4261085 - 4260453 - | DSBA oxidoreductase TERM 4129 4261215 - 4261248 + r 90 -6 -5.14563 | overlap 4261231 4261232 CGCAGTTGATTCGCA GCGGTGCGG-CGCTGG ATGT CCAGCGGCTGGAC-GC TTTTTTCATCAAAAG TERM 4130 4261231 - 4261247 + r 70 -8.7 -3.68256 | overlap 4261215 4261232 CGGTGCGGCGCTGGA TGTCCAG CGG CTGGACG CTTTTTTCATCAAAA Rfer_3817 4261690 - 4261295 - | hypothetical protein TERM 4131 4261567 - 4261580 + g 71 -5.9 -4.3534 | opp_overlap 4261565, overlap 4261570 CAGTCGCCGAGAAGT CCTGG AAGG CCGGG TTTTCCTGCTTGGCC TERM 4132 4262513 - 4262531 + G 70 -10.2 -3.54676 | overlap 4262509 4262514 ATGAACAACTTTCTA CGCCGGTG CTG CACCGGCC TTGCTTTCGCTGGCT TERM 4133 4262514 - 4262530 + G 73 -13.7 -2.72324 | overlap 4262513 4262509 TGAACAACTTTCTAC GCCGGTG CTG CACCGGC CTTGCTTTCGCTGGC Rfer_3819 4262498 - 4263010 + | outer membrane chaperone Skp (OmpH) Rfer_3820 4263031 - 4263696 + | two component transcriptional regulator TERM 4134 4263993 - 4264013 + G 86 -14.7 -3.31322 | opp_overlap 4263976 GCACGGGCTGAATTG CCCCAGCGC GCC GTGCTGGGG TTCTCCACCGTTCAA Rfer_3821 4263693 - 4265027 + | periplasmic sensor signal transduction histidine kinase Rfer_3822 4265158 - 4266663 + | peptidase S1C, Do Rfer_3823 4267427 - 4266681 - | YbaK/prolyl-tRNA synthetase associated protein TERM 4135 4267178 - 4267141 - G 85 -12.5 -3.72576 | overlap 4267120 TTGGCCTTGACGAAA GCGGCGTCCGCGCGGCC CAGC GGCCCCACCAGCGCCGC GACCCTGGCCTCGTC Rfer_3824 4268346 - 4267438 - | pyruvate carboxyltransferase Rfer_3825 4268688 - 4268395 - | hypothetical protein TERM 4136 4268868 - 4268885 + r 89 -9.1 -4.67982 | overlap 4268869 TTTGACCTTAGGGGT TGGGAGG GACT CCTCCCG TTTTGTTGGGTCAAC TERM 4137 4268869 - 4268884 + r 73 -10.4 -3.40307 | overlap 4268868 TTGACCTTAGGGGTT GGGAGG GACT CCTCCC GTTTTGTTGGGTCAA Rfer_3826 4270657 - 4268927 - | ABC transporter related TERM 4138 4270739 - 4270719 - H 72 -11.9 -2.78384 | opp_overlap 4270723 GGTGCCGGTAGCACA GTGACCGTC AAC GACGATCAC TTCGGGTTCAATCCG Rfer_3827 4270894 - 4271370 + | hypothetical protein Rfer_3828 4272586 - 4271399 - | radical SAM family protein TERM 4139 4271665 - 4271691 + g 80 -10.1 -4.13767 | TGGCGGAGGTGGGTT GCAGCGGGCTC TTTTT GAGCCAGTTGC TTTTGACATCACCCA Rfer_3829 4273708 - 4272788 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Rfer_3830 4275746 - 4273722 - | carbamoyl-phosphate synthase L chain, ATP-binding Rfer_3831 4276545 - 4275769 - | enoyl-CoA hydratase Rfer_3832 4278226 - 4276604 - | propionyl-CoA carboxylase TERM 4140 4276934 - 4276916 - G 81 -4.5 -4.89852 | overlap 4276918 CCACATCCACAAAAA GCGCG GGCTGAAGG CGCGC CCACACATGCCGTAG TERM 4141 4277122 - 4277099 - G 70 -5.2 -4.57073 | overlap 4277079 4277078 4277101 GATGTTCTGCAAAAA CACCAGCGGA ATCT TGCGCTGGCA GCACAGCTCGATGAA Rfer_3833 4280042 - 4278237 - | acyl-CoA synthetase TERM 4142 4279039 - 4279072 + g 74 -11.7 -3.53012 | overlap 4279037 4279042 AACATGGTGGGCACG CCGTGCAGGCCGG TGCATTTT TCGTCCTGCACGG TTTGCAGCACGGCCA TERM 4143 4279042 - 4279055 + g 72 -2.4 -4.77036 | overlap 4279037 4279039 ATGGTGGGCACGCCG TGCA GGCCGG TGCA TTTTTCGTCCTGCAC TERM 4144 4279503 - 4279465 - G 74 -11.7 -3.5393 | gap 2, overlap 4279454 4279466 ACCACCGTGCGCAAA TGCGGCAGGCGGGCCGCCT GCA AGGCG-CCCGGCTG-CGCC GTGTCCAACTCAGGT TERM 4145 4279502 - 4279466 - G 77 -15.2 -2.72144 | gap 2, overlap 4279454 4279465 CCACCGTGCGCAAAT GCGGCAGGCGGGCCGCCT GCA AGGCG-CCCGGCTG-CGC CGTGTCCAACTCAGG TERM 4146 4280490 - 4280509 + G 78 -10.7 -3.91897 | opp_overlap 4280488 ACCCTGCAATTGACG GTGGCGG GCGACA CCGCCAC TTTGTGCATCACCGA TERM 4147 4281029 - 4280984 - g 72 -11.2 -3.36569 | opp_overlap 4280999 4281001, overlap 4280982 4280998 GCAAGCCCTCAAAGA CGAGGTGCGTCAA-AGCCGCGC GCTG GCGCTGTTGCTG-CGCACCTCG CGCCCGATCAAGCAA Rfer_3834 4280097 - 4281158 + | AraC family transcriptional regulator Rfer_3835 4281691 - 4281356 - | hypothetical protein Rfer_3836 4282202 - 4281780 - | rhodanese-like protein Rfer_3837 4283880 - 4282519 - | hypothetical protein TERM 4148 4283737 - 4283727 - G 70 -4 -4.72272 | TGGCCGCACCAAAAA TGAA GGC TTCA CGAACGCCAGCACTG TERM 4149 4283830 - 4283808 - G 74 -11.2 -3.54951 | overlap 4283823 GAGCCGACGACATAA GGGCGCCACC ACA AACGGCGCCC AGGATGGCAGCGAGA Rfer_3838 4285519 - 4284389 - | acyl-CoA dehydrogenase-like TERM 4150 4285574 - 4285559 - R 100 -11.8 -5.4477 | AAATTTGTAAAAAAA GGGGGC GCTA GCCCCC GTCCGTCTTGCGCAG Rfer_3839 4286796 - 4285603 - | Acetyl-CoA C-acetyltransferase aceK 4288720 - 4286873 - | bifunctional isocitrate dehydrogenase kinase/phosphatase protein TERM 4151 4286956 - 4286942 - G 76 -10 -3.70902 | CTGGTCATACGGAAA CACGTC ATA GACGTG CCCGGCCTGGATGCG TERM 4152 4288416 - 4288446 + g 73 -14 -2.79831 | AAAGTCTCGGCCAGC TCGGGCTGGTGGTG GTC CACCAGCAGGCCGA TGTAATGCAGCTTGA Rfer_3841 4289451 - 4288780 - | carbonate dehydratase TERM 4153 4289412 - 4289377 - G 84 -6 -5.0133 | gap 1, opp_overlap 4289383 4289401 CAGCTTGGTAAAAAA GCCCGG-CCGCTCCAGT GCC ATTTGCGCGGCCCAGGC GCGGTTGTGGGCGAA Rfer_3842 4290643 - 4289465 - | acyl-CoA dehydrogenase-like TERM 4154 4289622 - 4289635 + g 73 -4.5 -4.58395 | overlap 4289617 4289620 TGCACGCCCTCACCC GCCAT CCAG GTGGC TTTTTCAGCCGTCCA TERM 4155 4290131 - 4290080 - G 78 -7.2 -4.72272 | gap 2, opp_overlap 4290094, overlap 4290127 CTTCTCGATCAAAAA GGCGGAG-ACGCCACGCGCG-CCC AGCTCG GGGTCGCTCTTGGCATACACCACC AGCGTGTCGGCGTCC Rfer_3843 4291088 - 4290624 - | MerR family transcriptional regulator TERM 4156 4291158 - 4291179 + H 74 -10.3 -3.49102 | opp_overlap 4291146 4291174 CAATGCCGACCTTGA TTGACGTTT ACGT AAACGTCAA TTATGTCGCAAATCT TERM 4157 4291650 - 4291662 + G 100 -10.5 -5.16572 | CGGTTTCAGCAGCGA CGCGG CGG CCGCG TTTTTTGCCTTGCAT Rfer_3844 4291204 - 4292304 + | beta-lactamase-like Rfer_3845 4293658 - 4292333 - | anaerobic c4-dicarboxylate membrane transporter family protein TERM 4158 4292784 - 4292737 - G 76 -6.1 -4.62336 | opp_overlap 4292757, overlap 4292739 AGGCCAGGCCAAAAA TACCGATGACCGCGACCACGC CGGCAC GCAAGGTGGCGGTCTTGGGAA CATCGTCAACAGCGA TERM 4159 4292782 - 4292739 - G 73 -8.7 -3.92746 | opp_overlap 4292757, overlap 4292737 GCCAGGCCAAAAATA CCGATGACCGCGACCACGC CGGCAC GCAAGGTGGCGGTCTTGGG AACATCGTCAACAGC aspA 4295108 - 4293705 - | aspartate ammonia-lyase TERM 4160 4295365 - 4295386 + r 100 -15.9 -4.39696 | opp_overlap 4295365 GCCCATCAAGAAAAA GGCCCTGTC GGGT GACAGGGCC TTTGTTGCTTTGGGA TERM 4161 4295386 - 4295365 - R 100 -15.9 -5.1356 | opp_overlap 4295365 GCCCATCAAGAAAAA GGCCCTGTC GGGT GACAGGGCC TTTGTTGCTTTGGGA Rfer_3847 4296498 - 4295425 - | hypothetical protein Rfer_3848 4296824 - 4299040 + | molybdopterin oxidoreductase Rfer_3849 4299125 - 4299715 + | putative sigma 54 modulation protein/ribosomal protein S30EA Rfer_3850 4299749 - 4300210 + | signal-transduction protein Rfer_3851 4301374 - 4300235 - | putative capsule biosynthesis protein TERM 4162 4300807 - 4300767 - G 81 -13.8 -3.32963 | overlap 4300768 AGTGCGACGCCAGAA CGCTGCGGCGTGGCGCCC CAGGC GGGCGGCACGCCGCTGTC CGGACCGGCCCATGA TERM 4163 4300806 - 4300768 - G 83 -17.3 -2.59564 | overlap 4300767 GTGCGACGCCAGAAC GCTGCGGCGTGGCGCCC CAGGC GGGCGGCACGCCGCTGT CCGGACCGGCCCATG TERM 4164 4300854 - 4300826 - G 75 -8 -4.25283 | overlap 4300828 4300831 ACCGGCCCATGAAAA CACCAGCAGGCG CGCGC CGCCAGCGAGTG GCCAGGTGGCGGGTG Rfer_3852 4302789 - 4301359 - | hypothetical protein TERM 4165 4302548 - 4302512 - G 75 -8.6 -4.17657 | gap 1, overlap 4302516 CACGAGACGTCAAAA CCCACGCCGCCGGC-CG AGAC CACGCCGCCGGCATCGG CATCAAAGGCCGCCA Rfer_3853 4303209 - 4302793 - | hypothetical protein Rfer_3854 4303773 - 4303303 - | HoxW protein Rfer_3855 4305293 - 4303770 - | nickel-dependent hydrogenase, large subunit TERM 4166 4304223 - 4304186 - G 81 -14.2 -3.28712 | overlap 4304187 GCTCGCCGCCCAGAA TGTCGGGGTCATCCAG CAGACC CTGGATGACCTCGACG CAATGCAGCATCTCC TERM 4167 4304222 - 4304187 - G 85 -17.7 -2.57132 | overlap 4304186 CTCGCCGCCCAGAAT GTCGGGGTCATCCAG CAGACC CTGGATGACCTCGAC GCAATGCAGCATCTC Rfer_3856 4305880 - 4305314 - | NADH ubiquinone oxidoreductase, 20 kDa subunit Rfer_3857 4306599 - 4305877 - | hydrogen dehydrogenase TERM 4168 4306243 - 4306274 + g 71 -5.8 -4.37886 | gap 1, overlap 4306245 4306246 TTCCATGCCCATCTG GTAGGCGGTGGCCTG CAG CAGGCAATTGCC-GC TTTTCTCGCAACTGG Rfer_3858 4308407 - 4306596 - | respiratory-chain NADH dehydrogenase domain-containing protein TERM 4169 4307173 - 4307207 + g 82 -12.1 -3.57263 | CCCGGGCGCGCGCAG TCGCCCGACACCGAG TGAAT CTTGGTGCCGGTCGA TTTGGGCGTGCCGAT TERM 4170 4307585 - 4307556 - G 79 -7.7 -4.46112 | gap 1, overlap 4307558 GCGCAGGTAAAGAAA GCCGCGGCGCGCGC CCA GCACGTGG-GCGGC GACGGTCATACCCTC TERM 4171 4307757 - 4307740 - G 71 -8.3 -4.07687 | AGGCCGGTGGCAAAA CCGGCGC CGCC GCGCCCG CGCAAATTGGAGCGC TERM 4172 4307931 - 4307892 - G 88 -14.2 -3.59979 | gap 1 GTCCTGCACCTCAAA CCACGCG-GCGGGCCATTG CGG CACCGGCACGCGCGCGCGG ATCAGCTCGGCCATG Rfer_3859 4309430 - 4308459 - | methionyl-tRNA formyltransferase TERM 4173 4308655 - 4308641 - G 74 -11.4 -3.54935 | CAAATTCCTTGGAAA CGGGTG GAA CACCCG GTGCGACGTCTGCCA TERM 4174 4308715 - 4308701 - G 71 -7 -4.18018 | TTTCTCCATTCAAAA CCGCCG TGG CGCCGG GGAATGGATTGAAGG Rfer_3860 4309936 - 4309427 - | peptide deformylase TERM 4175 4309523 - 4309510 - G 74 -3.1 -4.85599 | gap 1, overlap 4309511 GGTACTCGACAAAAA CCTTGC CCT GCA-GG TGGTCCATCTCGTGC TERM 4176 4310502 - 4310492 - g 71 -8.2 -4.08216 | GCATGTTCCTGAAAA GCGC CTG GCGC TGGCCCGAATTGTGG TERM 4177 4311334 - 4311294 - g 86 -15.3 -3.36515 | overlap 4311292 4311315 GGCGATCCTGAAAGA CGGTGCGCGCCTGATCGAC AAG ACCGATGCGGCGCGCCCCG AGCTGAAGTTGCCCG Rfer_3861 4310236 - 4311465 + | peptidoglycan-binding LysM Rfer_3862 4311509 - 4312738 + | DNA processing protein DprA, putative Rfer_3863 4312826 - 4313338 + | hypothetical protein Rfer_3864 4315707 - 4313335 - | hypothetical protein TERM 4178 4314449 - 4314425 - G 95 -6.4 -5.40474 | gap 1, opp_overlap 4314444, overlap 4314426 4314427 AGGGTGCCAAAAAAA TCCGGCTCGGC CAGC GCC-AGCCGCA GCACCGGCATTTGCA TERM 4179 4315529 - 4315543 + g 71 -7 -4.2349 | opp_overlap 4315524 CTCTGGTAAAGCGTC CAGGCG TCG CGCCGG TTTTGCATGTCACGC secF 4316745 - 4315792 - | preprotein translocase subunit SecF secD 4318649 - 4316769 - | preprotein translocase subunit SecD Rfer_3867 4318955 - 4318680 - | preprotein translocase, YajC subunit Rfer_3868 4322740 - 4319084 - | indolepyruvate ferredoxin oxidoreductase TERM 4180 4322213 - 4322195 - G 75 -2.2 -5.00616 | overlap 4322197 GCTGGCCGGAAAAAA CACCGGCG TAC CGCAGGCC TTGAAAATATGGTCG TERM 4181 4322796 - 4322824 + r 85 -13.1 -3.53012 | GTCAGTGCGCGCTGC GGGGTCACCGACT GCA AGTCGGAGGCCTC TTTGAAGCGGGAAAG Rfer_3869 4323551 - 4322931 - | hemolysin III family channel protein Rfer_3870 4324140 - 4323817 - | ethyl tert-butyl ether degradation EthD Rfer_3871 4324586 - 4324233 - | MerR family transcriptional regulator Rfer_3872 4325596 - 4324697 - | hypothetical protein TERM 4182 4325116 - 4325065 - G 73 -13.6 -2.77523 | gap 1, opp_overlap 4325065 4325066 4325067, overlap 4325060 4325062 CCTCCAGCAACACCA CCGCGCGCGC-TTCCAGCGCCAGCG CTT CAATGGCGCTGGCACGCTCGCTCGA TTTGGACGACAGGAA TERM 4183 4325067 - 4325112 + g 72 -13.9 -2.64155 | gap 1, opp_overlap 4325065 4325060 4325062, overlap 4325066 4325065 TCCAGCAACACCACC GCGCGCGCTTCCAGCGCCAGCG CTT CAATGGCGCTGGCA-CGCTCGC TCGATTTGGACGACA Rfer_3873 4325632 - 4326018 + | hypothetical protein Rfer_3874 4326055 - 4326648 + | phosphoheptose isomerase TERM 4184 4327101 - 4327129 + G 71 -9.6 -3.72695 | gap 1, overlap 4327103 TATGCGAACGCCTTC AAGGTGGTGACCG AGCG CGG-CACCACCTA TTTGATGGGACGCGT TERM 4185 4327103 - 4327127 + G 79 -12.2 -3.44848 | gap 1, overlap 4327101 TGCGAACGCCTTCAA GGTGGTGACCG AGCG CGG-CACCACC TATTTGATGGGACGC Rfer_3875 4326645 - 4327289 + | transport-associated Rfer_3876 4328247 - 4327333 - | 6-phosphogluconate dehydrogenase, NAD-binding Rfer_3877 4329392 - 4328256 - | twitching motility protein TERM 4186 4328433 - 4328446 + g 74 -3.1 -4.74215 | gap 1 GTCGAAAGTCTGCAT GCC-CA GGT TGCGGC TTTTCTTCATGATCT TERM 4187 4328847 - 4328862 + g 77 -3.2 -4.93296 | GATGCCGACCTCGCG CTGGGT CACC ACACAG TTTTTGTGCTGATGC Rfer_3878 4330508 - 4329465 - | twitching motility protein Rfer_3879 4330544 - 4331263 + | hypothetical protein Rfer_3880 4332506 - 4331325 - | S-adenosylmethionine synthetase TERM 4188 4332551 - 4332535 - H 70 -2.9 -4.69549 | AATTGAAAAGTAAAA CAACAAG GTT CGCGTTG CTTGGGCTTTTCGGG TERM 4189 4332963 - 4332985 + G 79 -7.6 -4.56775 | opp_overlap 4332959, overlap 4332965 ATGTGGAGGAAGCGC TGGCACGCGG GCG CGGCGTGCTG TTTTTGACGCCGCAT TERM 4190 4332965 - 4332983 + G 78 -10.2 -3.90048 | opp_overlap 4332959, overlap 4332963 GTGGAGGAAGCGCTG GCACGCGG GCG CGGCGTGC TGTTTTTGACGCCGC TERM 4191 4333213 - 4333199 - g 85 -5.6 -5.01732 | overlap 4333186 4333201 AAGGCGTTGAAAAAA GGCCAG TCG CTGGGC CTGCTGCCGGACCAG TERM 4192 4333246 - 4333261 + G 75 -2.4 -5.00616 | overlap 4333247 GCCGCCGCTGGGCAT GGGCGT CTGG GCGCCA TTTTTTGGCCGCGAG Rfer_3881 4332698 - 4333528 + | putative acyltransferase Rfer_3882 4334031 - 4333606 - | AsnC family transcriptional regulator Rfer_3883 4334157 - 4335266 + | ornithine cyclodeaminase Rfer_3884 4335263 - 4336228 + | arginase Rfer_3885 4337199 - 4336378 - | hypothetical protein TERM 4193 4336710 - 4336725 + g 84 -6 -5.00616 | AGTCAAAGTGCAGCG GGCCGG TCAG CAGGCC TTTTTTGAGCCAGCG Rfer_3886 4337615 - 4337202 - | hypothetical protein Rfer_3887 4338470 - 4337715 - | cobalamin B12-binding Rfer_3888 4340019 - 4338463 - | D-lysine 5,6-aminomutase alpha subunit TERM 4194 4339651 - 4339693 + g 77 -11.2 -3.65522 | gap 1 AATGTGTTGGCACAC CGTGGCGGCGCACGCGTCA GCGGCG TGGCGCGCG-GCTGCCTCG TTCTTGGGGTAGCTC Rfer_3889 4341092 - 4340016 - | hypothetical protein TERM 4195 4340435 - 4340421 - G 78 -7.1 -4.59511 | AATATTGGCCAAAAA CAGGG GCTTG CCCTG ACTGTCCCACACCCC TERM 4196 4340915 - 4340901 - G 90 -5.6 -5.24129 | opp_overlap 4340901 CTTGGGGACAAAAAA GACCTG GTC CCGGTC TTCTCCGTCGCGACC Rfer_3890 4342158 - 4341115 - | zinc-binding alcohol dehydrogenase Rfer_3891 4343400 - 4342219 - | hypothetical protein TERM 4197 4343354 - 4343364 + g 78 -2.4 -5.01732 | overlap 4343342 GCGTCCAGGGCCTCA CGGC TCA GCAG TTTTTTGGCCGGATT TERM 4198 4343683 - 4343656 - g 79 -12.6 -3.54424 | GTCCAGCTGGCCAAA GCGCTGGGCTGC GCCC GCAGCACGGCGC AACTGCGGCTGAAGG Rfer_3892 4343569 - 4344012 + | AsnC family transcriptional regulator Rfer_3893 4346582 - 4344021 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4199 4344574 - 4344554 - G 71 -6.7 -4.18197 | AGGCCGTACTCAAAA TCCAGCGCC CCA GGGGCAGGA TCAGGCCGGTCGACT TERM 4200 4346018 - 4346004 - G 83 -4.2 -5.03314 | opp_overlap 4346008 4346009 TCGATCGCCAAAAAA GCGG TTGGTCG CCGC CGCATCGACCTGGTG TERM 4201 4346111 - 4346101 - G 74 -6.8 -4.34402 | opp_overlap 4346087 4346101 GCTTGCACAGCAAAA CTGC TCA GCAG GTTCTGCAGATACGC Rfer_3894 4347708 - 4346767 - | hypothetical protein TERM 4202 4347170 - 4347158 - G 73 -4.8 -4.70887 | CCATCAACAAAGAAA CCGA AGATG TCGG TGACGCTCTGGGTCG TERM 4203 4347560 - 4347534 - G 73 -13.7 -2.70932 | opp_overlap 4347553 GCGTGCCTGCAACGA CGCTGACGCCG CTCGC CGGCGCCAGCA GGGCGTTGATCAAGG Rfer_3895 4348051 - 4350192 + | Alpha-glucan phosphorylase Rfer_3896 4350281 - 4350835 + | hypothetical protein TERM 4204 4350867 - 4350839 - T 72 -12.4 -2.71791 | gap 1, overlap 4350838 ACCTCGTCCTGAAAT CGCATTGCCCGGC GTGG GCCGGGCTA-GCG CCTGCTCCTAGACAG Rfer_3897 4351616 - 4350975 - | TetR family transcriptional regulator TERM 4205 4351118 - 4351089 - G 76 -9.1 -4.04206 | opp_overlap 4351100 4351101, overlap 4351090 CCAGTTGTAGAGAAA GCCGGGCAGGCTG CATG CCGCCTGCGCGGT GATGCGTGTTTCGGT TERM 4206 4351117 - 4351090 - G 72 -12.6 -3.02202 | opp_overlap 4351100 4351101, overlap 4351089 CAGTTGTAGAGAAAG CCGGGCAGGCTG CATG CCGCCTGCGCGG TGATGCGTGTTTCGG TERM 4207 4351560 - 4351574 + g 70 -4.2 -4.56775 | overlap 4351553 GCGTTTTTCGTCCGT GCCG GGCGTGA CGGC TTTTTGCCGGCGGGT TERM 4208 4352399 - 4352383 - g 78 -10.1 -3.86194 | AACGCCTTGTACAAA TCGGCCG CGG CGGCCAA CTGCAATGGCGTCGG Rfer_3898 4351729 - 4353390 + | AMP-dependent synthetase and ligase TERM 4209 4353773 - 4353745 - g 74 -12.3 -3.21747 | opp_overlap 4353732, overlap 4353746 CGAGGCCATGAGCAA GCGCCACGCGCTG GCT CAGCGCAGCGCGC GCGAGAACATTGCCG TERM 4210 4354067 - 4354054 - g 70 -3.7 -4.63218 | opp_overlap 4354054 GGCCCTGCAACAAAA GCTGC CCGT GCTGC TGTTTGCCGAAGGCG TERM 4211 4354516 - 4354561 + G 100 -16.9 -3.85698 | gap 1, opp_overlap 4354498 4354518, overlap 4354519 4354558 CTTGCGCGTCTATGA CACGCGCGCTGCCATCACCGGC ATG GCTGATGAGGGCAGCGTGC-TG TTTCTACGCAGCGGC TERM 4212 4354560 - 4354518 - g 73 -14 -2.78384 | opp_overlap 4354516 4354519 4354558, overlap 4354498 TGCGCGTCTATGACA CGCGCGCTGCCATCACCGGC ATG GCTGATGAGGGCAGCGTGCT GTTTCTACGCAGCGG TERM 4213 4354519 - 4354559 + G 100 -19.7 -3.51934 | opp_overlap 4354498 4354518, overlap 4354516 4354558 GCGCGTCTATGACAC GCGCGCTGCCATCACCGGC ATG GCTGATGAGGGCAGCGTGC TGTTTCTACGCAGCG TERM 4214 4354824 - 4354846 + G 100 -12.7 -4.60487 | gap 1, overlap 4354822 GCCGCCTGTTTATTG CGGC-CGCGC ATTT GCGCGTGCCG TTTTTCAGCGTGGTG Rfer_3899 4353383 - 4355215 + | propionyl-CoA carboxylase Rfer_3900 4355281 - 4356261 + | hypothetical protein Rfer_3901 4356346 - 4358823 + | CRISPR-associated helicase Cas3 Rfer_3902 4358816 - 4359529 + | CRISPR-associated Cas5d family protein TERM 4215 4360719 - 4360702 - g 84 -9.9 -4.27584 | ATCGTGAACTGAAAA GCTCGAA CTTT TTCGAGC GACTGCAAACCTGGC TERM 4216 4361150 - 4361139 - g 74 -5.8 -4.56597 | overlap 4361149 CTGGGTGGTGAAAAA CGTG ACAC CACG GCCGCCAAGCTCATG TERM 4217 4361416 - 4361397 - g 82 -12.2 -3.68619 | CTCAATTCACCCAAA GTGGATGC CATC GCATCCAC CACCGAAGAAGCTAT Rfer_3903 4359531 - 4361441 + | CRISPR-associated Csd1 family protein TERM 4218 4362032 - 4362056 + G 77 -3.7 -5.0133 | gap 1, opp_overlap 4362007 4362032 GATGGGAACGAAGCA TCGTGTAGAT CAAGGC ATCTAC-CGA TTTTTTGGAAGCATG Rfer_3904 4361457 - 4362341 + | CRISPR-associated Csh2 family protein TERM 4219 4363104 - 4363077 - g 75 -7.8 -4.17048 | gap 1, overlap 4363080 CGTGTCGCAAAACAA GACTGCGGCCA AGGCCGG TGGCCGCA-TC GCCGCCCAAGCCCGC Rfer_3905 4362373 - 4363227 + | prophage antirepressor TERM 4220 4363327 - 4363341 + G 70 -10 -3.53224 | CAGTGCGGCCTGATT CACCTG GAG CAGGTG TTTGACGACAACGTC Rfer_3906 4363252 - 4363890 + | CRISPR-associated Cas4 family protein TERM 4221 4364265 - 4364253 - g 84 -5.5 -4.87626 | GGGCAAGATCAAAAA CACCC GGC AGGTG TTGCAACGCGGTGCC TERM 4222 4364583 - 4364594 + G 80 -3.6 -5.10497 | GGCAGCCGGGCTGGA CCCG CAAG TGGG TTTTTTGCATGCCTT Rfer_3907 4363903 - 4364931 + | CRISPR-associated Cas1 family protein Rfer_3908 4364941 - 4365231 + | hypothetical protein Rfer_3909 4367401 - 4367093 - | hypothetical protein TERM 4223 4367939 - 4367928 - g 74 -7.2 -4.35044 | GGATTGAAACACAAA GGCG GCTA CGCC CGTGTTGACGATTTG Rfer_3910 4367709 - 4367990 + | hypothetical protein Rfer_3911 4368688 - 4368218 - | hypothetical protein TERM 4224 4369313 - 4369330 + r 83 -12.7 -3.25823 | opp_overlap 4369297 4369295 GCGATCCAGCCTGGG TGCCGGG ATCG CCCGGCA TTCATGTCGGGCGCG TERM 4225 4370605 - 4370626 + r 74 -11.5 -3.25823 | opp_overlap 4370600 TCGCCGAACAGATCC TGGCGGGCG GGAT CGCCCGGCA TTCATGTCGGGCGCG Rfer_3912 4371095 - 4370844 - | hypothetical protein Rfer_3913 4371274 - 4371672 + | rhodanese-like protein Rfer_3914 4372418 - 4371714 - | putative lipoprotein TERM 4226 4371872 - 4371852 - G 78 -13.9 -3.14132 | GCGCTGCGCCAGCAA GCCTGCCCC GCT GGGGCTGGC CTGCGTGAGCGTGGC Rfer_3915 4373380 - 4372415 - | hypothetical protein TERM 4227 4372472 - 4372442 - G 91 -13.8 -3.72576 | TGGGGTTGCAGCAAA GCCGGGTTCGCCCG GGC CGGGCGCCACCGGC CCATTGCCCAAGAGC TERM 4228 4373001 - 4372972 - G 76 -13.5 -3.02263 | opp_overlap 4372983 4372984 4372996 ACAGTTCGGCCAACA GGCCGGGGCGCAT CGGA ATGCGCGCCGGCG GCTGCACGTCGGCGC TERM 4229 4372983 - 4373026 + g 73 -10.1 -3.57263 | opp_overlap 4372972, overlap 4372984 4372996 AACAGGCCGGGGCGC ATCGGAATGCGCGCCGGCG GCTGCA CGTCGGCGCGCAGCGCGAC TTTGGAGCTGCCGCT TERM 4230 4372984 - 4373025 + g 73 -13.6 -2.74144 | opp_overlap 4372972, overlap 4372983 4372996 ACAGGCCGGGGCGCA TCGGAATGCGCGCCGGCG GCTGCA CGTCGGCGCGCAGCGCGA CTTTGGAGCTGCCGC Rfer_3916 4374207 - 4373392 - | ABC transporter related TERM 4231 4373928 - 4373902 - G 71 -7.2 -4.19577 | overlap 4373920 4373923 GAAGGCCGAAAACAA GGCGCCATGCTG GAA CAACATGCCGAC GCGGCTGGCCGCGCC Rfer_3917 4375334 - 4374204 - | hypothetical protein TERM 4232 4374294 - 4374270 - G 78 -15.7 -2.54193 | CACCATGGCAATCGA GGTCACCACCG AGG CGGTGGTGCCC TGGCCCAGGCTCTCG TERM 4233 4375033 - 4374990 - G 73 -8.9 -3.87815 | gap 3, opp_overlap 4374990 4375006, overlap 4374992 GCCGAGCGCCAGAAA CAGTTGCCAGGCGCTGGT-GCG CCG CGCCACCGGCGGC-GGCAAC-G CGTACTGTTCGACGC TERM 4234 4375032 - 4374992 - G 79 -12.6 -3.52906 | opp_overlap 4374990 4375006, overlap 4374990 CGAGCGCCAGAAACA GTTGCCAGGCGCTGGT-GCG CCG CGCCACCGGCGGC-GGCAAC GCGTACTGTTCGACG TERM 4235 4376020 - 4376007 - g 70 -4.5 -4.56597 | opp_overlap 4376015, overlap 4376011 TGGCGGGTCGAAAAA CAACG CCTG CGCTG GGACATCCTGGACGC Rfer_3918 4375506 - 4377215 + | glucose-methanol-choline oxidoreductase TERM 4236 4377376 - 4377346 - f 85 -12.7 -3.49687 | opp_overlap 4377352, overlap 4377352 AGGGTTGATAAAAAT GAAAAAGCACCGG TGATC CCGGTGCTTTTTT TATACAAAATTGGCC TERM 4237 4377352 - 4377370 + F 100 -11.7 -5.60993 | opp_overlap 4377352 4377346 GATAAAAATGAAAAA GCACCGG TGATC CCGGTGC TTTTTTTATACAAAA TERM 4238 4377370 - 4377352 - f 100 -11.7 -5.2197 | opp_overlap 4377352, overlap 4377346 GATAAAAATGAAAAA GCACCGG TGATC CCGGTGC TTTTTTTATACAAAA TERM 4239 4377694 - 4377709 + G 71 -6 -4.37658 | overlap 4377680 GGGCCGCGCTGCTGC CCGCCG CCGC CGCCGG TTTTATCGCGGCCTT TERM 4240 4377854 - 4377825 - g 77 -7.7 -4.37092 | opp_overlap 4377828 4377830, overlap 4377828 ACGGTGCTCAGAAAA GAGCTGGGGCGCA CCCA TGCGCCGCTGTTC TCGGGCGGCAAAGAG Rfer_3919 4377471 - 4378229 + | hypothetical protein TERM 4241 4378256 - 4378280 + T 71 -4.2 -4.56597 | gap 1, opp_overlap 4378204 4378205 AAGAAAGTCTCTTAA CGGCCAG-GTG ATGC CGCACTCGCCG TTTTTGCCGGCGCGC Rfer_3920 4380273 - 4378252 - | peptidoglycan glycosyltransferase TERM 4242 4378956 - 4378966 + g 81 -4.6 -4.89393 | CGGCGTACCACTTTT GCTG TTC CGGC TTTTTGTAGGCTTTG TERM 4243 4379696 - 4379716 + g 70 -3.2 -4.68645 | gap 1, overlap 4379699 CCCCGGTAGTTGGCG GCATCGTCG GAGT CGTCGA-GC TTTTCCTTTTCGGTC TERM 4244 4380238 - 4380190 - G 72 -3 -4.78107 | overlap 4380191 4380193 4380195 4380198 4380235 CAGCACCAGCAAAAA GCACACCACGACCGC-GATGCCGG CCA CCAGCACCCGCGCCCG-AAAGCGC GACAGATCCGCCTCG Rfer_3921 4380807 - 4380277 - | rod shape-determining protein MreD TERM 4245 4380631 - 4380608 - G 72 -2.3 -4.79451 | overlap 4380609 4380610 ATGCCAAACACAAAA GCGGCGC CAATGCCGAT GCGCTGC GGCTGGTGGATGCTC Rfer_3922 4381724 - 4380804 - | rod shape-determining protein MreC TERM 4246 4381107 - 4381075 - G 71 -9 -3.72576 | gap 1, overlap 4381079 TTGGCCGCCATGAAA CGCAGCTCCAGCGCG TTGG CGCGCAGG-GCCGGG TCGCCAAAGGCCACG TERM 4247 4381595 - 4381562 - G 81 -15.9 -2.89683 | ATTGCATCGGATAGA GCGCGGCCGCCACCG CCAC CCGCAACGGCCGCGC CAGCTCAAGGCGCGC Rfer_3923 4382783 - 4381740 - | cell shape determining protein MreB TERM 4248 4381838 - 4381849 + g 71 -7.2 -4.15044 | opp_overlap 4381836 4381838 CTTCGGCCACCAACA CCGG CAGA CCGG TTTCTTCGGCCAGCA TERM 4249 4383131 - 4383108 - g 100 -8.8 -5.00616 | CCCTGGTCGAAAAAA TGCGCGCGGT CGAT ACCACGGGCA TTGAGCCGCTGGCGC Rfer_3924 4382987 - 4383286 + | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 4250 4383420 - 4383445 + G 74 -6.8 -4.42788 | gap 1, overlap 4383421 CATTTCTTGGCCCGC GCCCAG-GCGA ACGCG TCGCTCGGGGC TTTTCTGGACTTCAA TERM 4251 4383966 - 4384014 + G 70 -12.4 -2.87132 | gap 1, overlap 4383984 AGCCTCGATCAGGCC GGGCCGATGGCGCGCACGGCGCA AGAC TGCGCTTTGC-TGCTGTCGGCCA TGTGTGGGCCGGACC TERM 4252 4384613 - 4384633 + G 70 -10.4 -3.53811 | overlap 4384621 GGCCGACATCTTTAC CCTGCCGG GCTCG CTGGCAGG TTTGCCGGGCATGAG Rfer_3925 4383312 - 4384793 + | glutamyl-tRNA(Gln) amidotransferase, A subunit gatB 4384796 - 4386286 + | aspartyl/glutamyl-tRNA amidotransferase subunit B Rfer_3927 4387021 - 4386359 - | hypothetical protein TERM 4253 4386687 - 4386697 + g 89 -4.6 -5.1963 | CGGGCCAGCAACGCC CGGT CGC GCCG TTTTTCTTCATTCAG pyrE 4387695 - 4387024 - | orotate phosphoribosyltransferase TERM 4254 4387441 - 4387427 - G 71 -7 -4.18018 | overlap 4387431 CGGTTGTAGGCAAAA GGGACG TTG CGGCCC AGGCGGGCCAGCTCC TERM 4255 4387701 - 4387721 + H 83 -8.1 -4.4078 | overlap 4387696 4387698 CCTGGGCCAATGCGT CCGCCGCGG GGG CGGCGCCGG TTTTGGTTCCAACAC TERM 4256 4388288 - 4388270 - g 78 -6.7 -4.67234 | AGGCAACCGCAAAAA CTCAGGT TTTTT ACCCGAG GAGCGGGCCTGGATG Rfer_3929 4387758 - 4388549 + | exodeoxyribonuclease III TERM 4257 4388597 - 4388573 - T 71 -11.3 -2.96274 | CTTGTCAGAACCAGA CTTCAGCGCCG ATT CGGCGCTGGGG GAGCGACCAGCTCAG Rfer_3930 4389307 - 4388609 - | hypothetical protein TERM 4258 4389257 - 4389227 - G 80 -11.8 -3.83026 | overlap 4389232 CGCCGTCACATCAAA CGCAACCGGCGC GGCCATG GCGCTGGCTGCG CAGGTCAGCAAAGCG Rfer_3931 4393088 - 4389552 - | SNF2-related TERM 4259 4390761 - 4390743 - G 71 -8.1 -4.08692 | gap 1 CAAGTTGGGGCAAAA GC-GCGCG GCCT CGCGCTGC CAATTGCCCATCAGG TERM 4260 4392263 - 4392234 - G 86 -13.6 -3.53012 | opp_overlap 4392240 CTTGCCGCTCTCAAA CAGCAAGCGCCC GGTACT GGCCGCTTGCTG CAGCACCATGACACC TERM 4261 4392580 - 4392603 + g 73 -13.8 -2.74012 | opp_overlap 4392558 TCCGTGTCGATGCCG GCCTGCGCGC CCTG GCGCGCAGCC TGGTTCAACTCCTGC TERM 4262 4393356 - 4393380 + r 83 -15.1 -2.78384 | opp_overlap 4393345, overlap 4393361 ATTATTCCCCCAAGG CGCAGGCCATT CAA AATGGCTTGCG TATGCTGGAAACCAC Rfer_3932 4397170 - 4393763 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4263 4394630 - 4394644 + g 93 -5.6 -5.46657 | opp_overlap 4394629 GTCTGGATCGAAGAT GGCGTG CTT CACACC TTTTTTCTTGGCCTG Rfer_3933 4397379 - 4397999 + | hypothetical protein Rfer_3934 4399062 - 4398046 - | lipoyl synthase Rfer_3935 4399802 - 4399110 - | lipoate-protein ligase B Rfer_3936 4400072 - 4399803 - | hypothetical protein TERM 4264 4400743 - 4400713 - H 100 -4.1 -5.84381 | gap 2, overlap 4400714 4400716 GCACCAACAAAAAAA TCACCCAGGGTGCAA GTG CTGCACCC-A-GTGA ACCAAGCGATAGGAA TERM 4265 4400724 - 4400714 - H 70 -6.8 -4.09002 | overlap 4400713 4400716 CACCAACAAAAAAAT CACC CAG GGTG CAAGTGCTGCACCCA TERM 4266 4400866 - 4400840 - H 76 -10.8 -3.6239 | opp_overlap 4400839 4400843 ACATCGACAAACCAA TGGGCAGCGCCA ACA TGGGGCTGCTCA ATTCAATTTCCCATT Rfer_3937 4400908 - 4402677 + | methyl-accepting chemotaxis sensory transducer TERM 4267 4402759 - 4402736 - T 74 -6.6 -4.2349 | gap 1, opp_overlap 4402741 4402743 CCGGCACAGCCAAAA GCTGCG-GGCC TGC AGCCACGCTGC GGCTATTGGATGTGA Rfer_3938 4405223 - 4402803 - | putative GAF sensor protein TERM 4268 4402985 - 4402997 + g 78 -10.5 -3.87641 | TCAGCAGCTCATGCA GGCCG ATG CGGCC TTTGTAGCCGGTGTT TERM 4269 4403457 - 4403480 + g 72 -13.2 -2.55668 | opp_overlap 4403443, overlap 4403456 4403463 GGCCCGCATGATGAG CGCAAAGTCG ATGC CGGCTTTGCG GTTGATCTGGACCTG TERM 4270 4403489 - 4403504 + g 70 -4 -4.72386 | gap 1, overlap 4403497 CTTTGCGGTTGATCT GGACCTG GCG CAG-TCC TTTTTGCGTGATTTC TERM 4271 4404443 - 4404423 - G 78 -2.5 -5.0538 | overlap 4404424 GGGCACGCCAAAAAA CTTGGCC AGTGAGG GGCCAAT CTGGGCTGGCCGGAC Rfer_3939 4406011 - 4405220 - | beta-lactamase-like Rfer_3940 4406782 - 4406105 - | FHA domain-containing protein TERM 4272 4406295 - 4406241 - G 76 -7.2 -4.4767 | gap 4, opp_overlap 4406292 TGATGCACGACAAAA CCACGCT-GGC--GTCGGGTGATCGCGG CAA CGGCGA-CACCCGGCTTGCCGATCGTGG TGACTACTTTGGTCA TERM 4273 4406462 - 4406474 + g 77 -7.7 -4.29738 | GCTGGCACCCGCTTT GACCA TCA TGGTC TTTTCATAACTCTCG Rfer_3941 4407616 - 4406831 - | protein serine/threonine phosphatases TERM 4274 4407110 - 4407122 + g 83 -4.7 -5.06816 | GTCCACGCCCAGTGC CCGGG TGA CCAGG TTTTTGTTGGGCGCT Rfer_3942 4410352 - 4407629 - | serine/threonine protein kinase with Chase2 sensor TERM 4275 4407676 - 4407699 + g 89 -7.4 -5.11033 | overlap 4407677 GCGGTTTCAACGTGG AGGTTGTGCT GGCG AGCACGACCG TTTTTTCAAATTCTG TERM 4276 4407677 - 4407698 + g 77 -10.9 -3.65535 | overlap 4407676 CGGTTTCAACGTGGA GGTTGTGCT GGCG AGCACGACC GTTTTTTCAAATTCT TERM 4277 4408138 - 4408152 + g 71 -7.1 -4.26903 | TGGGAGTACCCCACA CCAGG CCGGT CCTGG TTTTGCTCGAATCGG Rfer_3943 4411259 - 4410561 - | integral membrane protein TerC TERM 4278 4410874 - 4410824 - G 100 -11.1 -5.01811 | gap 2, opp_overlap 4410848 4410849 CCAGCAAACCAAAAA TCACC-A-GCGGCAACTGGTGCTGG CTG CCAGCGCCTGTGGCCGCACCGGCGA TGGCGATGACGTTGT TERM 4279 4411329 - 4411303 - R 100 -13 -4.63048 | opp_overlap 4411299 4411295 CTTATAAACAACAAA GCCGAATTGTCC CTG GGGCAATCCGGC TAGGTGGGTTGAGTG TERM 4280 4411379 - 4411369 - R 71 -8.2 -3.91897 | opp_overlap 4411369 GGGCGCACCGATAAA GGCG ACT CGCC TTTACAGCATGGCTT Rfer_3944 4412274 - 4411381 - | succinyl-CoA synthetase subunit alpha TERM 4281 4411912 - 4411931 + g 73 -4.2 -4.64334 | gap 1, overlap 4411913 GGTTTCCTTGCCACC GGC-CGCCA CCT TGGCGCGCA TTTTGTTGCGCACTT sucC 4413460 - 4412294 - | succinyl-CoA synthetase subunit beta TERM 4282 4412360 - 4412383 + g 77 -3.6 -5.0133 | overlap 4412361 4412362 ATCGGCGCTGATGAT GGGCAGGCCG GATT CGGCCAGCAG TTTTTTGCCCAGCTC Rfer_3946 4413622 - 4414557 + | N-acetyl-gamma-glutamyl-phosphate reductase Rfer_3947 4415100 - 4414639 - | regulatory protein RecX TERM 4283 4414725 - 4414767 + g 83 -2.6 -5.24129 | gap 2, overlap 4414727 CCGCCAGAAACCGCA TCTGGCGCGCCGCGTCGGCG CCGTC CACCG-C-CGCCGTGCCAAA TTTTTTCTGCCAGAC Rfer_3948 4416260 - 4415106 - | recA protein TERM 4284 4415892 - 4415902 + g 89 -4.6 -5.22039 | GTCGATAAAGGCGCA CTGG CCA CCGG TTTTTTGCATTTCGG TERM 4285 4416118 - 4416143 + g 81 -6.1 -4.75308 | gap 1 TGCTTCTCGATCTGG GCCAGCGCCACT TGC AG-GGCTTTGGC TTTTTCGCTGTTGAT Rfer_3949 4416364 - 4416903 + | transcriptional regulatory protein Rfer_3950 4417001 - 4417675 + | two component transcriptional regulator TERM 4286 4417865 - 4417912 + G 73 -10.4 -3.60296 | gap 1, opp_overlap 4417865 4417864, overlap 4417866 GCACTGGAGTACAAC GTGCGGGCGCTGG-CGCAGCTGG TCA CCATCAGCGACCAGCGGGCGCAA TTTCAGCTGCCACTG TERM 4287 4417866 - 4417911 + G 73 -13.9 -2.75963 | gap 1, opp_overlap 4417865 4417864, overlap 4417865 CACTGGAGTACAACG TGCGGGCGCTGG-CGCAGCTGG TCA CCATCAGCGACCAGCGGGCGCA ATTTCAGCTGCCACT TERM 4288 4418201 - 4418183 - g 78 -6.7 -4.60924 | gap 1 GAAACCCTGGAAAAA CGGTC-CC TGCT GGCGACCG AAATTGTCAAGGGCG TERM 4289 4418734 - 4418723 - g 73 -4.4 -4.66163 | opp_overlap 4418705 AGGGCGATTGAAAAA CAGA TTGA TCTG GGTTATGAAGGCACG Rfer_3951 4417706 - 4419160 + | periplasmic sensor signal transduction histidine kinase Rfer_3952 4419835 - 4419176 - | hypothetical protein TERM 4290 4419443 - 4419453 + g 85 -2.4 -5.41143 | CAGCTTCAAGCCGGC GAGC TCA GCAC TTTTTTTCGCCAGTG TERM 4291 4419459 - 4419484 + g 88 -14.1 -3.59262 | AGCTCAGCACTTTTT TTCGCCAGTGC CTCG GCATTGGCGAA TTTGCCCATGTAGAC TERM 4292 4419784 - 4419771 - G 78 -2.3 -5.10077 | overlap 4419772 AAAGACTGCAAAAAA CCCTG CGAC CAGGC GAAGTAAAGACCATT Rfer_3953 4420682 - 4419876 - | biotin--acetyl-CoA-carboxylase ligase Rfer_3954 4421168 - 4420689 - | nuclear protein SET TERM 4293 4421137 - 4421154 + g 100 -4.1 -5.86965 | gap 1, overlap 4421118 4421140 CGGGTTTGAATGCGG CGATTGCC TGC GGCGA-CG TTTTTTTTGCTCACT TERM 4294 4421954 - 4421933 - g 78 -2.2 -5.14965 | gap 1, opp_overlap 4421921 4421920, overlap 4421934 4421935 AGCGCGAGGAAAAAA TC-CGCGCC TTTGT GTCGCGCGA CTATTGGGAGGTGCA TERM 4295 4422053 - 4422034 - g 83 -4.8 -5.0538 | overlap 4422035 CCGCAGTGGAAAAAA GCCGCCGC CAAT GCCGCCGC CGGTAACCTTGAGGA TERM 4296 4422399 - 4422389 - g 79 -8.2 -4.57837 | AGATGCTCTCAAAAA GCGC CAT GCGC CATCTGGCACCACAC TERM 4297 4422565 - 4422582 + G 76 -6.9 -4.56775 | overlap 4422559 TATGACCTGGTGGTG CGCCGCT TCAT GGCGGTG TTTTTCCCGAACGCT TERM 4298 4422945 - 4422928 - g 78 -4.8 -4.7497 | gap 1 GCCATGCACGAAAAA GGCCTGG GCACA CC-GGCC ACCCGCGCCAGCATC TERM 4299 4424070 - 4424050 - g 83 -4.5 -5.02074 | overlap 4424052 GCAGCGGTCAAAAAA GTCGCCAGC CCA GCCGCCGGC CTGCAGCCCAGCGCG Rfer_3955 4421281 - 4424289 + | DNA topoisomerase III TERM 4300 4424336 - 4424278 - f 88 -11 -4.08767 | gap 3 GGCATTGTCGGAAAA CACCTGGCGTGAGCCATGCGGTCGCCCGC CTGC GCGAGC-AGCGCAAGGC-CA-GCCTGGCG AGCCTTGACAAGCCC Rfer_3956 4424286 - 4425023 + | DTW TERM 4301 4425403 - 4425383 - g 73 -13.3 -2.74012 | CTATCACGTGAACTA CCTTGACCG GGA CGGCCAAGG AATCACACTAACCCT Rfer_3957 4425075 - 4425422 + | hypothetical protein Rfer_3958 4426173 - 4425565 - | hypothetical protein TERM 4302 4425677 - 4425663 - G 71 -6.4 -4.18018 | TTTGTGGACCCAAAA CCAATG GGC CACTGG TAACTCCAACGTCGT TERM 4303 4425839 - 4425855 + g 80 -10.9 -3.81146 | TTCTTCAACCGGTCC TTGAGCG TGG CGCTCAA TTCTTCCTTGAAGAG Rfer_3959 4426655 - 4427302 + | hypothetical protein Rfer_3961 4428284 - 4428075 - | hypothetical protein Rfer_3962 4429115 - 4429684 + | YbcL TERM 4304 4429843 - 4429822 - f 71 -5.7 -4.25104 | overlap 4429823 CGGGGCTCACGAAAA GCCGGCACG CAGA CTTGCCGGT GTCAAACAGGCGTCA TERM 4305 4429967 - 4429955 - g 79 -9.1 -4.25104 | opp_overlap 4429958 TCGCCTCTACCAAAA CTGGC TGC GCCAG CACCGCGGCTTGTCG TERM 4306 4430925 - 4430940 + G 70 -4.6 -4.56597 | opp_overlap 4430911, overlap 4430921 4430923 AGTGGCCTGCTCAGC GGCACC ACCT GCTGCC TTTTTGACGGCAGCC TERM 4307 4431872 - 4431893 + G 72 -10.9 -3.28712 | gap 1 CGATGAAATTTTTCA GGTG-GCGGA GAT TCCGCGCACC TTGTCGGGCAAGAAG TERM 4308 4431948 - 4431929 - g 71 -9.2 -3.71848 | overlap 4431909 GCTGCCGATCAAGAA GCTGCTGC TGGG GCAGCCGC TGGACAAGGTGCTCA Rfer_3963 4429902 - 4432037 + | acetoacetyl-CoA synthetase Rfer_3964 4432466 - 4432050 - | hypothetical protein TERM 4309 4432344 - 4432317 - G 70 -12.6 -2.94416 | CAGCCCTAGCACATA GGCGCTGTAGCG CGAG CGCATCAGCGCC TCGGGCGTGGGGGCG Rfer_3965 4432605 - 4433675 + | pyruvate dehydrogenase (lipoamide) Rfer_3966 4433706 - 4434746 + | transketolase Rfer_3967 4434743 - 4434994 + | biotin/lipoyl attachment TERM 4310 4435027 - 4435058 + F 73 -6.4 -4.39166 | CAGGCGTGGAACCGT CGTGAGCTTGCGCT GGCA GGGGCAGGCCCGCG TTTTCGTGTCTGGAC Rfer_3968 4435093 - 4435689 + | biotin/lipoate A/B protein ligase Rfer_3969 4436459 - 4435713 - | hypothetical protein TERM 4311 4435818 - 4435781 - G 76 -14.1 -3.03781 | overlap 4435776 TGAAGGCAAAGGACA GCATGGCATGCAGCGTC GTGA GCCGGCGCATGCCACGC GAGCTCACCTGCACG Rfer_3970 4437835 - 4436684 - | hypothetical protein Rfer_3971 4438758 - 4437838 - | ABC transporter related Rfer_3972 4439750 - 4438758 - | hypothetical protein TERM 4312 4439026 - 4438996 - G 70 -4.6 -4.52589 | opp_overlap 4438998 4439002, overlap 4438997 4438998 4439002 GCCGCGTAGATAAAA CGGAAACCCGCACC GCC GGTGCCGATTTCTT CCTGCATGCGCACGA Rfer_3973 4440142 - 4439747 - | hypothetical protein Rfer_3974 4441275 - 4440142 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 4313 4440656 - 4440672 + g 78 -6.5 -4.64861 | CACTGCACTTTCAGG CTCAGCG CGC CGTTGGG TTTATTTTCCAGCAG Rfer_3975 4442254 - 4441265 - | hypothetical protein TERM 4314 4441463 - 4441442 - G 93 -7.9 -4.9755 | ATACAGAAGCAAAAA GGGACGGCG ATGC CACTGTCCC GGCTCCCCCACGGTG Rfer_3976 4442892 - 4442341 - | hypothetical protein Rfer_3977 4443950 - 4442889 - | beta-ketoacyl synthase Rfer_3978 4444219 - 4443947 - | acyl carrier protein Rfer_3979 4445034 - 4444366 - | phosphoesterase, PA-phosphatase related TERM 4315 4444858 - 4444847 - G 80 -3.6 -5.09426 | GCCAACGGCAAAAAA CCGA TCCA CCGG TCCACCACCGTCAGC Rfer_3980 4445194 - 4445481 + | acyl carrier protein Rfer_3981 4445478 - 4446122 + | transmembrane protein TERM 4316 4446273 - 4446250 - g 71 -6 -4.30719 | opp_overlap 4446251, overlap 4446246 4446251 4446252 CTGGCCCAGAAGAAA TCCGGCAAAG CCAG CTTTGTCGAA AAAAAATACATCGGT Rfer_3982 4446124 - 4446717 + | putative transmembrane protein Rfer_3983 4446714 - 4447568 + | polysaccharide deacetylase Rfer_3984 4447723 - 4448916 + | 3-oxoacyl-(acyl carrier protein) synthase I Rfer_3985 4448913 - 4449707 + | hypothetical protein Rfer_3986 4449704 - 4450168 + | hypothetical protein Rfer_3987 4450165 - 4451511 + | hypothetical protein Rfer_3988 4451513 - 4451815 + | hypothetical protein Rfer_3989 4451808 - 4452722 + | lipid A biosynthesis acyltransferase TERM 4317 4452931 - 4452917 - g 72 -12.8 -3.06302 | ATGATGGGCATCGAA GGCGGC GAT GCCGCC GAACGCGCCCGACTG TERM 4318 4453466 - 4453479 + G 79 -8.1 -4.49311 | overlap 4453423 4453476 AACGAGGTCGAGCGC CTGGC CACC GCCAG TTTTGTCCTGGTGGT TERM 4319 4454289 - 4454270 - g 70 -10.7 -3.50869 | CAGCATGCCAGACAA GCCGCGT TGCCCG ACGCGGC ACAGGCACCCGCGCG TERM 4320 4454991 - 4455009 + G 71 -5.8 -4.3898 | opp_overlap 4454966, overlap 4455003 TGGCTGCCATTGGCA GCACCGTG GCA CCCGGGGC TTTTCTGGCCCTGGT Rfer_3990 4452719 - 4455073 + | hypothetical protein Rfer_3991 4455057 - 4455785 + | hypothetical protein TERM 4321 4456245 - 4456226 - g 70 -10 -3.53012 | GCTGGCGGGCGCAAA CGCCTCTG ACGG CAAAGGCG TGACCGTCCTGGGAA Rfer_3992 4455816 - 4456292 + | hypothetical protein TERM 4322 4456945 - 4456966 + G 70 -10.1 -3.53091 | opp_overlap 4456943 CACCGGCAACCCACC TGCCCCAGG ACGA CCTGGAGCA TTTGCGCCAGAGCAT Rfer_3993 4456299 - 4457099 + | hypothetical protein fabG 4457103 - 4457843 + | 3-ketoacyl-(acyl-carrier-protein) reductase Rfer_3995 4457857 - 4458993 + | hypothetical protein Rfer_3996 4459859 - 4458990 - | putative methyltransferase Rfer_3997 4460656 - 4459868 - | glycosyl transferase family protein TERM 4323 4460122 - 4460106 - G 73 -5 -4.67038 | overlap 4460108 GGGTCAAAATCAAAA CGGCGC ATCCA GCGCTG GCCCCGCATCACACT Rfer_3998 4461406 - 4460660 - | phospholipid/glycerol acyltransferase Rfer_3999 4462690 - 4461431 - | beta-ketoacyl synthase Rfer_4000 4462776 - 4463213 + | hypothetical protein Rfer_4001 4463224 - 4464486 + | beta-ketoacyl synthase Rfer_4002 4464483 - 4464986 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ Rfer_4003 4465902 - 4465024 - | hypothetical protein Rfer_4004 4466149 - 4466463 + | transport-associated TERM 4324 4466515 - 4466498 - f 81 -12.7 -3.06261 | CGTGAATCTTCAAGA CCGTGCG CTAG CGCACGG CACCAAACAGCAAGC TERM 4325 4467794 - 4467780 - g 73 -10 -3.65199 | AACTGGTCACGCAAA TGGTGG ACC CCACCA CCAACAGCCTGCTAC TERM 4326 4468165 - 4468110 - g 76 -14.9 -2.56596 | gap 3, overlap 4468123 TTGCCGACCAACTCA GCCACGCGCACAAGGACGGCCACGCTTG GGG CGA-CATGGCCATCC-TGTGCGCG-GAC TGGAAGACCATGGAC Rfer_4005 4466630 - 4468462 + | hypothetical protein TERM 4327 4468878 - 4468864 - g 76 -5.7 -4.68645 | opp_overlap 4468863 4468873, overlap 4468876 CATCGAAAAGGAAAA CCCTT CACTC AAGGG CGTTCTGCCCAAGGT Rfer_4006 4468511 - 4470055 + | N-6 DNA methylase TERM 4328 4470671 - 4470699 + G 73 -9.5 -3.86897 | opp_overlap 4470663 4470674 ACCAAACCCTCGAAG CCATAGCCGAAAC CCT GTTCCGGCAGTGG TTTGTAGAAGATGCA Rfer_4007 4470052 - 4471290 + | restriction endonuclease S subunits-like Rfer_4008 4471290 - 4471988 + | hypothetical protein TERM 4329 4472215 - 4472185 - g 95 -17.8 -3.41229 | overlap 4472211 4472212 AGAGCTTCAGGACAA GGCAGTTATTTCCA TTT TGGAAACAACTGCC GCCGACGGCAAAAGC Rfer_4009 4471985 - 4473007 + | hypothetical protein TERM 4330 4474124 - 4474137 + G 72 -2.3 -4.78764 | opp_overlap 4474124, overlap 4474125 CACCGACCGCAATGA TCTGG ACGA CCAGC TTTTTAATACCTTTG Rfer_4010 4473039 - 4476242 + | HsdR family type I site-specific deoxyribonuclease Rfer_4011 4477306 - 4476407 - | LysR family transcriptional regulator Rfer_4012 4477429 - 4478130 + | nitroreductase TERM 4331 4478150 - 4478174 + T 100 -18.6 -3.04263 | CGAATGCCCGATCCC GCCGCCCTGC TCCGT GCAGGGCGGC TCTTGCCCATGCAAT Rfer_4013 4479235 - 4478294 - | hypothetical protein TERM 4332 4479715 - 4479703 - H 90 -10.5 -4.30576 | GCGCGAGGACGAAAA GGCGC TAT GCGCC AAAACAAGCCACGGT Rfer_4014 4479857 - 4480375 + | hypothetical protein Rfer_4015 4480563 - 4480943 + | glyoxalase/bleomycin resistance protein/dioxygenase Rfer_4016 4481597 - 4480947 - | 2OG-Fe(II) oxygenase Rfer_4017 4481736 - 4482440 + | glutathione S-transferase-like Rfer_4018 4483395 - 4482445 - | rarD protein TERM 4333 4482544 - 4482526 - G 70 -3.7 -4.5954 | CCAGATCAGATAAAA GCCGATG GCGCG CGCCGGC TCAAACGCTTCGCCG TERM 4334 4483759 - 4483782 + G 71 -5.3 -4.29153 | gap 2, overlap 4483764 4483767 TGGCCGGTGGCCTGG CGCCG--CAGG CCGC CCTGGACGGCG TGTTTTTTCTGGTGG TERM 4335 4483764 - 4483784 + G 95 -6.7 -5.31275 | overlap 4483759 4483767 GGTGGCCTGGCGCCG CAGGCCGCC CTG GACGGCGTG TTTTTTCTGGTGGAC Rfer_4019 4483521 - 4484399 + | hypothetical protein Rfer_4020 4484566 - 4484817 + | hypothetical protein TERM 4336 4485693 - 4485703 + G 78 -2.4 -5.03314 | overlap 4485690 GGTCTGGGACCGTCG GCGC TTC GAGC TTTTTTGGGGCTGGG Rfer_4021 4484857 - 4485954 + | hypothetical protein Rfer_4022 4486973 - 4485978 - | aldo/keto reductase Rfer_4023 4487380 - 4486997 - | MerR family transcriptional regulator TERM 4337 4487279 - 4487237 - G 72 -14.1 -2.57489 | gap 2, overlap 4487233 CAGGAACTCAAGCCA GCG-CATGTCGGCG-TCGCCG TAG CGGCGCGCGCCGCCACGGCGC TCTACCGGCGCGATC TERM 4338 4487413 - 4487396 - H 86 -9.9 -4.27316 | GGCGCTAATGTAAAA CTTCGAG TGCA CTCGAAG TCAAGCGCTTATTTC TERM 4339 4487773 - 4487799 + G 72 -2.9 -4.77157 | GACGGTCCGTTTACC GAGGCCAAGGA AATGG TCGGTGGCTTC TTTTTGCTCGATTGC Rfer_4024 4487557 - 4487910 + | hypothetical protein Rfer_4025 4488063 - 4488512 + | hypothetical protein TERM 4340 4488652 - 4488632 - g 90 -5.3 -5.252 | GAGTTCTACAAAAAA GCCTTCAAC GCG GTGGAGGGC TATCGCCTGCCGGGG TERM 4341 4488856 - 4488874 + G 76 -8.8 -4.08945 | opp_overlap 4488855 CGGTGCCAAAGTCAC CATGCCGG TTG CCGACATG TTTTGGGGCGATCGT Rfer_4026 4488530 - 4489015 + | glyoxalase/bleomycin resistance protein/dioxygenase Rfer_4027 4489028 - 4490338 + | putative sigma factor Rfer_4028 4490691 - 4492034 + | diguanylate cyclase Rfer_4029 4493183 - 4492068 - | putative DNA alkylation repair enzyme TERM 4342 4492167 - 4492181 + g 75 -2.1 -5.00616 | gap 1, overlap 4492150 TCTGCGGGTGCTCAT CTG-CG CCAG CGACAG TTTTTTGGCCAGCGG TERM 4343 4493771 - 4493747 - g 79 -7.7 -4.57073 | opp_overlap 4493746, overlap 4493748 CAGTGTGCCGAAAAA CGTGCTGGCCA TGC TGGCCGGCGCA CTGATATGGGTCACG TERM 4344 4494538 - 4494523 - g 77 -11.8 -3.64703 | GCCTTGCTACGCAAA CGCGCC GTGC GGCGCG CGTGGCGGAAAGTGT Rfer_4030 4493463 - 4494959 + | diguanylate cyclase Rfer_4031 4494988 - 4495554 + | hypothetical protein Rfer_4032 4495801 - 4495595 - | hypothetical protein TERM 4345 4495701 - 4495723 + g 76 -6.2 -4.61527 | overlap 4495703 TCAATGTCGGGCACG TCCCACTCGA AGA TCGAGCGGTA TTTTTCGACCATTTT TERM 4346 4495703 - 4495721 + g 73 -8.8 -3.91164 | overlap 4495701 AATGTCGGGCACGTC CCACTCGA AGA TCGAGCGG TATTTTTCGACCATT Rfer_4033 4496083 - 4497111 + | 6-phosphogluconate dehydrogenase-like protein TERM 4347 4497150 - 4497181 + G 73 -10.8 -3.61178 | overlap 4497152 CCGACAGTGCGCAGC GCGCGCCAGCGC CCTCCGAC GCGCTGGTGCTC TTTGGCGTGACTGGC TERM 4348 4497152 - 4497179 + G 72 -12 -3.38522 | overlap 4497150 GACAGTGCGCAGCGC GCGCCAGCGC CCTCCGAC GCGCTGGTGC TCTTTGGCGTGACTG TERM 4349 4497452 - 4497442 - g 70 -4.6 -4.57569 | opp_overlap 4497447, overlap 4497445 CGACGCGCTCAAAAA GACC TTG GGCC AGGCGCGGCGCCCGA TERM 4350 4498335 - 4498323 - g 71 -6.9 -4.15788 | opp_overlap 4498323 4498326, overlap 4498310 AACGCGTCGAAGAAA CGCCG TAT CAGCG CCTGCTCAGCGACGC Rfer_4034 4497119 - 4498537 + | glucose-6-phosphate 1-dehydrogenase Rfer_4035 4498606 - 4500441 + | glycoside hydrolase 15-related TERM 4351 4501031 - 4501066 + G 89 -17.6 -3.15544 | gap 1 CGTTCATCGTTCCTC GGCTGGCGCACGCTAGC GCC GCTGGCG-GCGGCAGCC TTGCTGGCGCTGGGC TERM 4352 4501860 - 4501836 - g 71 -7.9 -4.11394 | gap 1 ACCTGAGCCCCAAAA TGCGCGCTGA GGCCTA TC-GCGCGCA GCCGCTAGCAAAGAT Rfer_4036 4500593 - 4502143 + | O-antigen polymerase TERM 4353 4502321 - 4502291 - f 78 -12.2 -3.16154 | overlap 4502293 CAAGATCACATCCAA CATGTATAGAAAAT CGC ATTTTCTATACATA TCCCGGCTAACATGT TERM 4354 4502319 - 4502293 - f 81 -12.6 -3.13566 | overlap 4502291 AGATCACATCCAACA TGTATAGAAAAT CGC ATTTTCTATACA TATCCCGGCTAACAT Rfer_4037 4502384 - 4503466 + | filamentation induced by cAMP protein Fic Rfer_4038 4505618 - 4503630 - | phosphoesterase, PA-phosphatase related Rfer_4039 4505718 - 4505999 + | hypothetical protein Rfer_4040 4506677 - 4506186 - | molybdenum cofactor biosynthesis protein C TERM 4355 4508046 - 4508007 - g 73 -9.8 -3.57144 | overlap 4508008 TGCTGCAGGCCGAAA TCGCCTTGCGCGCGGGTG ATGC CGCCGGCGCGCAAACCGC CTTGAACACCATCCT TERM 4356 4508045 - 4508008 - g 73 -13.3 -2.74144 | overlap 4508007 GCTGCAGGCCGAAAT CGCCTTGCGCGCGGGTG ATGC CGCCGGCGCGCAAACCG CCTTGAACACCATCC Rfer_4041 4506899 - 4508545 + | peptidase M48, Ste24p Rfer_4042 4508932 - 4508513 - | membrane protein of unknown function Rfer_4043 4509443 - 4508961 - | hypothetical protein Rfer_4044 4510159 - 4509440 - | integral membrane protein TerC TERM 4357 4509791 - 4509758 - G 73 -10.1 -3.62572 | opp_overlap 4509758 4509759 4509784, overlap 4509759 GATGACCAGGTCAAA GGCGCCGTGCGCGGC CCCG GCCACGCCCAGCACG TTGTCCACCCCCATC TERM 4358 4509790 - 4509759 - G 73 -13.6 -2.77222 | opp_overlap 4509759 4509758 4509784, overlap 4509758 ATGACCAGGTCAAAG GCGCCGTGCGCGGC CCCG GCCACGCCCAGCAC GTTGTCCACCCCCAT TERM 4359 4510135 - 4510117 - G 71 -6.6 -4.25256 | overlap 4510114 GGTCGATCAAAACAA TGGCCAGC AGG GCGGACCA CCAGGCGGCAGAAAA Rfer_4045 4510327 - 4510797 + | hypothetical protein Rfer_4046 4511709 - 4510822 - | hypothetical protein TERM 4360 4510879 - 4510895 + g 77 -11.5 -3.57144 | CGACTGCAATTCCTG CCGGCGC TTG GCGTCGG TTTCGGGGTAGCGCA Rfer_4047 4512507 - 4511758 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 4361 4512171 - 4512197 + g 75 -2.3 -5.00616 | gap 2, opp_overlap 4512148, overlap 4512148 GCAGGTTGACGTCGA TGACGC-GG-TCA AAC TGTTCCAGCGTCA TTTTTTGCAGGCGCG TERM 4362 4512353 - 4512326 - G 77 -7.6 -4.38154 | gap 1, opp_overlap 4512329, overlap 4512327 ACATCCGCCACAAAA CCCGCTGCCGTGG CGC CCAGGGC-GCGGC ACTGTGCCACGGCCT Rfer_4048 4513285 - 4512665 - | YaeQ Rfer_4049 4514684 - 4513305 - | adenylosuccinate lyase TERM 4363 4513436 - 4513452 + g 77 -10.9 -3.66018 | GTTCGCGCGTCATCG GTTCACC GCG GGTGAAC TTCTTGAGCTGCTCG TERM 4364 4514961 - 4514971 + G 78 -6.8 -4.65895 | CCTGGTCATGGAGGG TGGC GAA GCCA TTTTTGACTCACGCG Rfer_4050 4514794 - 4515408 + | glutathione S-transferase-like Rfer_4051 4516774 - 4515425 - | HD-GYP domain-containing protein TERM 4365 4515859 - 4515885 + g 77 -8.6 -4.37502 | CGATGCGCTGACCCT CGCTGCGCCC CGCCAGC GGGCCCGGCG TTTTGGTGTGGTGGT TERM 4366 4516075 - 4516105 + g 70 -10.3 -3.54424 | TGGTCAGCGCCGCCT TGGCCAGCAGCGT CTCCA GCGCGGCGGGCCA TTTCAGCACCTCACG TERM 4367 4516306 - 4516284 - G 70 -4.9 -4.56775 | gap 1, overlap 4516286 AGGCGGGCGCAAAAA CTCGCCGGAT TGAC ATCCAGC-AG CATGGTCTGGGTTTG TERM 4368 4516423 - 4516433 + g 75 -8.2 -4.25104 | GGCTCTCTGCAATTT GCCC CAG GGGC TTTTCCTGGCGCACC TERM 4369 4516624 - 4516613 - G 76 -7.2 -4.48987 | overlap 4516588 GTCCCACAACGAAAA CGGC AGCG GCCG ACCAATGAGAACAGA Rfer_4052 4516782 - 4517294 + | bifunctional ADP-heptose synthase TERM 4370 4517326 - 4517296 - T 80 -10.5 -3.91897 | gap 1, opp_overlap 4517296, overlap 4517303 TTCGGCAGGGATAAA GACGAAAC-AGGGC TGTA GCCCTCGTCCCGTC TGCGTTAGAGTCTAT Rfer_4053 4518544 - 4517375 - | FAD dependent oxidoreductase TERM 4371 4517589 - 4517574 - G 91 -5.4 -5.31456 | gap 1, overlap 4517577 4517578 GCAACCCAGAAAAAA CCACTCG GCT CG-GTGG CGAAGCCGCCAACCA TERM 4372 4517916 - 4517866 - G 79 -8.2 -4.56597 | overlap 4517870 CCGGCGGCGCAAAAA TGAAGGCCGAGC-GCCGACGCGGC TCCAG GCCG-ATCGGCTGCACGCCCGCCA TGCCGGCCACTTCAT TERM 4373 4517896 - 4517870 - G 80 -11.4 -3.80855 | overlap 4517866 CGGCGCAAAAATGAA GGCCGAGCGCCG ACG CGGCTCCAGGCC GATCGGCTGCACGCC Rfer_4054 4518783 - 4519898 + | alanine dehydrogenase TERM 4374 4519945 - 4519908 - T 71 -9.9 -3.55444 | gap 1, overlap 4519909 GCTTGAGGCGTCAAA CCTGCCGCATGAACGCCT CGA AGGCGTCAAT-CGGCAGC GCGCGGCTGTACAAA TERM 4375 4519944 - 4519909 - T 79 -13.4 -2.73124 | gap 1, overlap 4519908 CTTGAGGCGTCAAAC CTGCCGCATGAACGCCT CGA AGGCGTCAAT-CGGCAG CGCGCGGCTGTACAA Rfer_4055 4523061 - 4519903 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4376 4520719 - 4520704 - G 73 -9 -3.90744 | CTGCGGGTCAAAGAA GCGCAA TGTG TTGCGC CCGGCCGTCTTGGCC TERM 4377 4520852 - 4520876 + g 85 -5.6 -5.02476 | overlap 4520854 4520872 TGATCGGCGATCTGA TACGGCTGGC TGAGC GCGAGCCGGA TTTTTTCACCGGTGT TERM 4378 4521838 - 4521867 + g 76 -10.7 -3.78775 | opp_overlap 4521844, overlap 4521831 TTCATGGAGCGGGTA GCCAAACAGCGTG GCCA TGCGCTGGTTGGC TTTCGTGATGCGGCC TERM 4379 4521923 - 4521903 - G 88 -7.5 -4.9218 | opp_overlap 4521910 GATCCACCAGAAAAA TCGCCACGC TCG ACGTGTCGA GGATTTGCTGCAACA TERM 4380 4522021 - 4522038 + g 78 -4.9 -4.7254 | gap 1 CGGGTGGGTCACCGG CAAG-GCT CGC AGCGCTTG TTTTTCATCGGCCAT TERM 4381 4522339 - 4522370 + g 71 -5.9 -4.42386 | AATCGCTGGGTTGCC GCCGGGTGCA-GGCA GGAC TTCCATG-ACCCGGC TTTTGTCGGTGGCGG Rfer_4056 4523104 - 4524030 + | protein of unknown function RIO1 TERM 4382 4524435 - 4524411 - g 72 -2.1 -4.7254 | gap 1, overlap 4524413 AGTGCGCAGCAAAAA GCGCTGGC CCAACAGTTT GCC-GCGC GCGACGTGGACCGCT TERM 4383 4524605 - 4524632 + G 76 -9.1 -4.07568 | overlap 4524599 4524600 4524598 CCACCGCGCCGGCGC CTCGCCCCTGT TGTTTC ACGGGGGCAAG TTTTACACCGAGCAC Rfer_4057 4524138 - 4524656 + | flavin reductase-like, FMN-binding Rfer_4058 4526698 - 4524662 - | glycosyl transferase family protein TERM 4384 4525187 - 4525166 - G 74 -3.6 -4.77036 | overlap 4525167 GCGCAGCACCAAAAA CGGCTGCA GGTAGT TGCCGCCA TTGGCAATGGTGCCG TERM 4385 4525540 - 4525524 - G 78 -6.5 -4.60797 | GCGCCATACACAAAA GGCTTGA AGG TCGAGCC CGGCTGGCGCCGCGC Rfer_4059 4527696 - 4526776 - | putative signal peptide protein Rfer_4060 4528750 - 4527788 - | putative transmembrane protein Rfer_4061 4529469 - 4528747 - | TetR family transcriptional regulator Rfer_4062 4529585 - 4530454 + | ABC transporter related Rfer_4063 4530454 - 4531332 + | inner-membrane translocator TERM 4386 4531452 - 4531470 + G 73 -10.2 -3.64703 | opp_overlap 4531448, overlap 4531455 CCTCAAGGAGACCTA CATCGCCG ACG CGGCGCTG TTTGACTCACGCACC TERM 4387 4532415 - 4532430 + G 100 -11.8 -5.07567 | GCTCGCAGAAGTGTG GCGGCG CATT CGCCGC TTTTTTCACCTGTGG Rfer_4064 4531423 - 4532460 + | inner-membrane translocator Rfer_4065 4532514 - 4533689 + | extracellular ligand-binding receptor Rfer_4066 4533706 - 4534524 + | ABC transporter related Rfer_4067 4534527 - 4536338 + | AMP-dependent synthetase and ligase Rfer_4068 4536349 - 4537152 + | enoyl-CoA hydratase/isomerase Rfer_4069 4538454 - 4537174 - | L-carnitine dehydratase/bile acid-inducible protein F Rfer_4070 4540188 - 4538992 - | acyl-CoA dehydrogenase-like TERM 4388 4539250 - 4539297 + g 100 -13.3 -4.33417 | overlap 4539252 CATGCGCCCCAGCCG CAGGCAGCCTTGCAGGCCGAG CGCAAT CTCGGTCTGCATGTCAGCCAG TTTCTTCTGGATCAA TERM 4389 4539252 - 4539295 + g 76 -14.5 -2.51259 | overlap 4539250 TGCGCCCCAGCCGCA GGCAGCCTTGCAGGCCGAG CGCAAT CTCGGTCTGCATGTCAGCC AGTTTCTTCTGGATC Rfer_4071 4540438 - 4541370 + | LysR family transcriptional regulator Rfer_4072 4541575 - 4542105 + | protoporphyrinogen oxidase TERM 4390 4542164 - 4542128 - T 100 -19.6 -4.7497 | opp_overlap 4542133, overlap 4542133 CGCAGCTAGCAAAAA CAAAACGCCGGGCATC TTGAT GATGCCCGGCGTTTTT TTATGACTCTCGGTG TERM 4391 4542159 - 4542133 - T 100 -19.5 -5.3104 | opp_overlap 4542133, overlap 4542128 CTAGCAAAAACAAAA CGCCGGGCATC TTGAT GATGCCCGGCG TTTTTTTATGACTCT TERM 4392 4542133 - 4542159 + T 100 -19.5 -5.65177 | opp_overlap 4542133 4542128 CTAGCAAAAACAAAA CGCCGGGCATC TTGAT GATGCCCGGCG TTTTTTTATGACTCT TERM 4393 4542215 - 4542261 + T 86 -12.9 -3.6682 | gap 1, opp_overlap 4542241 4542242 4542245, overlap 4542216 ACACCCGGAGCCACT AGGGCGCTCTACAGTGCGCGGC CAAA GCCACGCACTGT-GCGCGCCGG TTTCAATGGCTGGAG TERM 4394 4542216 - 4542260 + T 90 -16.4 -2.79878 | gap 1, opp_overlap 4542241 4542242 4542245, overlap 4542215 CACCCGGAGCCACTA GGGCGCTCTACAGTGCGCGGC CAAA GCCACGCACTGT-GCGCGCCG GTTTCAATGGCTGGA Rfer_4073 4544252 - 4542264 - | cytochrome c family protein TERM 4395 4544235 - 4544223 - G 73 -9.1 -3.95911 | AAGACAAACCAAGAA TGCCC ACA GGGCA GAACGCGCTAGTCGC Rfer_4074 4544754 - 4544506 - | hypothetical protein TERM 4396 4544636 - 4544616 - G 74 -5.4 -4.56607 | CCATGAACCAGAAAA TGGTCATG AAACG CATGTCCA AGTCGGTCACCGTAA Rfer_4075 4545403 - 4544807 - | NapC/NirT cytochrome c-like Rfer_4076 4546093 - 4545473 - | NapC/NirT cytochrome c-like TERM 4397 4545863 - 4545878 + g 81 -4.6 -4.9218 | overlap 4545864 GTCTGAGCAGATGGC GCGCAC ACCC GTGCGG TTTTTGTCGTGAATC Rfer_4077 4546559 - 4546230 - | cytochrome c, class I Rfer_4078 4547230 - 4546817 - | hypothetical protein TERM 4398 4547290 - 4547315 + r 100 -20.5 -3.73647 | opp_overlap 4547290 AGAAAACTTAAAAAA CCCCGGAGGCA TTGC TGCCTCCGGGG TTCTTGGTAAGTGCA TERM 4399 4547315 - 4547290 - R 100 -20.5 -5.28315 | opp_overlap 4547290 AGAAAACTTAAAAAA CCCCGGAGGCA TTGC TGCCTCCGGGG TTCTTGGTAAGTGCA Rfer_4079 4550000 - 4547343 - | hypothetical protein TERM 4400 4550208 - 4550247 + r 91 -15.2 -3.06501 | opp_overlap 4550213 4550216, overlap 4550213 CGACCCAGCCAGGCA AAAAATAACCCGGGTACG TCGC CGTATCCGGGTTGTTTTC TTGAGTCCGACTGTC TERM 4401 4550242 - 4550213 - R 100 -10.7 -5.09895 | opp_overlap 4550208 4550213, overlap 4550216 CAGCCAGGCAAAAAA TAACCCGGGTACG TCGC CGTATCCGGGTTG TTTTCTTGAGTCCGA TERM 4402 4550213 - 4550242 + r 100 -15.1 -4.67982 | opp_overlap 4550213 4550216, overlap 4550208 CAGCCAGGCAAAAAA TAACCCGGGTACG TCGC CGTATCCGGGTTG TTTTCTTGAGTCCGA TERM 4403 4550239 - 4550216 - R 100 -12.4 -4.64763 | opp_overlap 4550213 4550208, overlap 4550213 CCAGGCAAAAAATAA CCCGGGTACG TCGC CGTATCCGGG TTGTTTTCTTGAGTC Rfer_4080 4553122 - 4550312 - | hypothetical protein TERM 4404 4551557 - 4551575 + g 76 -12.4 -3.29511 | overlap 4551558 TTTGAAATTCTTCAG TCCGACCG GAA CGGTCGGG TTATGCGGCGATGCA TERM 4405 4551558 - 4551574 + g 72 -13.7 -2.57564 | overlap 4551557 TTGAAATTCTTCAGT CCGACCG GAA CGGTCGG GTTATGCGGCGATGC Rfer_4081 4555677 - 4553557 - | hypothetical protein Rfer_4082 4556617 - 4555694 - | hypothetical protein TERM 4406 4556716 - 4556682 - R 100 -18 -4.3534 | opp_overlap 4556678 4556677 4556692, overlap 4556684 TCCTAACGATCAAAA CAGCAGGAGAAGCTTG TGA CAAGCCTCTCCTGCTC ATGGCTATTTCTGAC TERM 4407 4556714 - 4556684 - R 100 -20.6 -3.77927 | opp_overlap 4556678 4556677 4556692, overlap 4556682 CTAACGATCAAAACA GCAGGAGAAGCTTG TGA CAAGCCTCTCCTGC TCATGGCTATTTCTG Rfer_4083 4559201 - 4556721 - | hypothetical protein Rfer_4084 4559938 - 4559330 - | PT repeat-containing protein TERM 4408 4559507 - 4559520 + g 74 -3.8 -4.73108 | GGCTGCAATCTTTTG CAGG GATGGA CCTG TTTTGCTTTTATCAA TERM 4409 4560003 - 4559965 - R 88 -11.3 -4.07885 | gap 2, opp_overlap 4559963 4559965 4559973, overlap 4559968 4559970 4559973 CATGTTCCCGTAAAA CGACATAACGCTAACCGCT GTA AGCGATTAGCGTTATG--G ATCCGTCTTCTTCAG TERM 4410 4560002 - 4559968 - R 100 -21 -3.08032 | opp_overlap 4559965 4559963 4559973, overlap 4559965 4559970 4559973 GTTCCCGTAAAACGA CATAACGCTAACCGCT GTA AGCGATTAGCGTTATG GATCCGTCTTCTTCA TERM 4411 4560000 - 4559970 - R 100 -17.8 -3.09823 | opp_overlap 4559965 4559963 4559973, overlap 4559968 4559965 4559973 TCCCGTAAAACGACA TAACGCTAACCGCT GTA AGCGATTAGCGTTA TGGATCCGTCTTCTT TERM 4412 4559973 - 4559997 + r 84 -12.9 -3.37622 | opp_overlap 4559970 4559968 4559965 4559973, overlap 4559965 4559963 CGTAAAACGACATAA CGCTAACCGCT GTA AGCGATTAGCG TTATGGATCCGTCTT TERM 4413 4559997 - 4559973 - R 95 -15.1 -3.68757 | opp_overlap 4559973 4559965 4559963, overlap 4559970 4559968 4559965 CGTAAAACGACATAA CGCTAACCGCT GTA AGCGATTAGCG TTATGGATCCGTCTT Rfer_4085 4560448 - 4560104 - | cytochrome c, class I Rfer_4086 4561539 - 4560694 - | putative signal transduction protein TERM 4414 4561266 - 4561289 + g 77 -11.8 -3.65351 | overlap 4561267 ATGGCGAAATGCCCA TCATCACCAG CGCG CTGGTGATGG TTTCGGTGCCGGTGG TERM 4415 4561664 - 4561648 - R 82 -5.1 -5.00884 | opp_overlap 4561648 ACTCTCCTGAAAAAA GAGGTTT AAG ACACCTC TTTTTGCCTCTACGG TERM 4416 4561648 - 4561664 + r 76 -5.1 -4.70659 | opp_overlap 4561648 ACTCTCCTGAAAAAA GAGGTTT AAG ACACCTC TTTTTGCCTCTACGG Rfer_4087 4562283 - 4561681 - | HupE/UreJ protein TERM 4417 4563534 - 4563515 - g 73 -4.9 -4.65895 | opp_overlap 4563519 GGTTGCAGTGAAAAA GGCGTGG GCTTTA CCAAGCC GATTCATCAGGTCGC Rfer_4088 4562588 - 4563769 + | hydrogenase (NiFe) small subunit (hydA) Rfer_4089 4563772 - 4564767 + | hydrogenase 2 protein HybA Rfer_4090 4564770 - 4565936 + | putative hydrogenase 2 b cytochrome subunit Rfer_4091 4565960 - 4567666 + | nickel-dependent hydrogenase, large subunit Rfer_4092 4567695 - 4568219 + | peptidase M52, hydrogen uptake protein Rfer_4093 4568221 - 4568475 + | hydrogenase assembly chaperone hypC/hupF Rfer_4094 4568472 - 4568969 + | hypothetical protein Rfer_4095 4568980 - 4569321 + | hydrogenase nickel insertion protein HypA Rfer_4096 4569342 - 4570280 + | hydrogenase accessory protein HypB TERM 4418 4570336 - 4570350 + G 84 -9.2 -4.52857 | CGGCATTGTTCAAGG GGTCGG ATT CCGGCC TTTTGTCTGGCGCCT TERM 4419 4571587 - 4571575 - g 73 -4.8 -4.62069 | CGCCCACCTCAAAAA CACG GTGTG CGTG ACCCGTGGCGATGAA Rfer_4097 4570277 - 4572646 + | (NiFe) hydrogenase maturation protein HypF Rfer_4098 4572639 - 4572857 + | hydrogenase assembly chaperone hypC/hupF Rfer_4099 4572854 - 4573984 + | hydrogenase expression/formation protein HypD TERM 4420 4574305 - 4574315 + G 78 -4.6 -4.77165 | GCCACGCCCCTCTAT CTGG CCG CCGG TTTTATTCTGGAGGA Rfer_4100 4573981 - 4575045 + | hydrogenase expression/formation protein HypE TERM 4421 4576205 - 4576243 + G 82 -11.5 -3.85698 | opp_overlap 4576203 4576200 4576227, overlap 4576208 4576235 GAGCATCAGATCACC GTGGCCGCCGTGGGCGG CAACA CCGGCGCCGGCGGCTGC TTTCTGGCCCGGGCA TERM 4422 4576659 - 4576671 + G 77 -3.3 -4.87803 | ACCCCAGCTACCACG TGGCG CGA CACCA TTTTGTTTACAAGTC Rfer_4101 4575053 - 4576750 + | formyl transferase-like TERM 4423 4577155 - 4577139 - g 87 -10.1 -4.30576 | CTTGCAGCAGGAAAA CCAGCGC CTG ACGCTGG AGCTGCGCGCCAGCC TERM 4424 4577235 - 4577212 - g 70 -5.2 -4.56775 | AGCCTGCGCCAAAAA GCCAAAGCGC TAGC GGGCTTCGAC AAGTTGATCCGCGCC TERM 4425 4578138 - 4578101 - g 73 -4.7 -4.68705 | gap 1 ACAAGGGCAATAAAA CCCACGCCGCTGACGAAC TCG GTTTGAC-GCGGGTTGGG CTGCGGATGAAGATG Rfer_4102 4576747 - 4578174 + | two component, sigma54 specific, Fis family transcriptional regulator Rfer_4103 4578851 - 4578201 - | TetR family transcriptional regulator Rfer_4104 4581943 - 4578848 - | acriflavin resistance protein TERM 4426 4579100 - 4579057 - G 72 -12.5 -3.06261 | gap 1, opp_overlap 4579055 4579054 TCGCAATGGGCAACA TGCCCGCACCCATGGCGATG GTGGT CATCACGATCGG-GCGGGCA CGCTTGTGGCAGGCG TERM 4427 4580180 - 4580147 - G 82 -15.3 -3.25823 | gap 1, opp_overlap 4580175 4580176 GCCGGCCGACAGGAA CG-GGTCGGTGCCGGC CTT GCCACCACCGACCGCG GTGTAGACCATCTTC Rfer_4105 4583108 - 4581957 - | secretion protein HlyD TERM 4428 4582302 - 4582265 - G 72 -12.7 -3.03124 | gap 1 CGCCACGCGCGAACA TGCCGACCTTGGCCGCGC CGG GCGCCGGCA-GGTCGACA TAGACGATCCCGTTG TERM 4429 4582800 - 4582820 + g 70 -10.4 -3.54424 | opp_overlap 4582800 CGTGTCGGGAGCGAA CGTGGCCA ACACC TGGCCGCG TTTCACCACGTCGCC TERM 4430 4582986 - 4583001 + g 81 -8.2 -4.62069 | CGTCAGTGCGGGCTT GTCCGC GGTC GCGGGC TTTTTGGCGTCGGAC Rfer_4106 4584603 - 4583146 - | RND efflux system, outer membrane lipoprotein, NodT TERM 4431 4584326 - 4584297 - G 75 -14.2 -2.87132 | opp_overlap 4584317 CGGCGGCGGCAGACA CGCGCGCCGCGC GCGCCT GCGCGATGCGCG ACTGCGCCGAAGCGA TERM 4432 4584558 - 4584500 - G 70 -12.9 -2.89564 | gap 1 GGTGCATTTGACACA GCGTCGCCGGGCGTGGGCAAGC-CGGCG CAGG CGCCGAGCATCACCACGGCCAGTGTCGC TAGCGTGAACCGCGC Rfer_4107 4585073 - 4585696 + | hypothetical protein TERM 4433 4586388 - 4586433 + G 70 -4.5 -4.46212 | gap 1, overlap 4586389 TGACTGTCAATCGTT ATGGTGAGGCAGGGCCGGGTCC CAG GGGCACGGTCATGAC-CGCCAG TTTTCTGCTCGACGG Rfer_4108 4586282 - 4586764 + | 3-demethylubiquinone-9 3-methyltransferase Rfer_4109 4586761 - 4587108 + | glutathione-dependent formaldehyde-activating, GFA TERM 4434 4587296 - 4587276 - g 74 -6.7 -4.4078 | GCGCTTCAAGGAAAA CCCGGAGCC GCA GCCTCCCGG CATGTTCCCGCCCGG TERM 4435 4587367 - 4587408 + G 71 -7.1 -4.24204 | overlap 4587378 GAAACAACGCTGATG GCCTCGGATGGCCGGGCCA CTGG TAGCCCGGTGTTTCAAGGC TTTTCGCTGTCGCTG Rfer_4110 4587166 - 4587579 + | 3-demethylubiquinone-9 3-methyltransferase TERM 4436 4587613 - 4587598 - T 100 -11.8 -5.24129 | opp_overlap 4587591 4587598 GCGGCTCATAAAAAA CGCGCC CGAA GGCGCG TTAGTCATTTATTGG TERM 4437 4587598 - 4587613 + T 80 -11.8 -3.37654 | opp_overlap 4587598, overlap 4587591 GCGGCTCATAAAAAA CGCGCC CGAA GGCGCG TTAGTCATTTATTGG Rfer_4111 4588640 - 4587642 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 4438 4587793 - 4587803 + g 71 -6.8 -4.22678 | overlap 4587796 TCGCCGCGGAAGTCG GTGG ACA CCAC TTTGTCTTCGGTGTA Rfer_4112 4590757 - 4588676 - | transketolase TERM 4439 4588861 - 4588873 + g 73 -9.1 -3.89524 | overlap 4588846 GTGGCACGCCAACGG GCAGC ACG GCTGC TTTGTAGGCTGCACT TERM 4440 4588903 - 4588938 + g 75 -2.4 -4.9218 | opp_overlap 4588927, overlap 4588905 TTTGTTGGTCGAATG TGGTGGTGCTCGGCAT GGAG ACGACGCGTACCGCTA TTTTTCTGCTAGCTA TERM 4441 4590702 - 4590720 + g 80 -10.3 -4.12857 | overlap 4590681 ATCGCGTTGGCCATC TCAGCGC GGTTG GCGCTGA TTGTTTGTGGTGCTT Rfer_4113 4590875 - 4591996 + | NADH:flavin oxidoreductase/NADH oxidase Rfer_4114 4592543 - 4592058 - | phenylacetic acid degradation-related protein TERM 4442 4592565 - 4592589 + H 79 -13.7 -2.78596 | opp_overlap 4592565 GCCTTTCGTTTTAAA TGTAGCTGCAT TGA ATGCAGCTGCA TATAATAAACACATG TERM 4443 4592589 - 4592565 - H 77 -11.5 -3.53012 | opp_overlap 4592565 GCCTTTCGTTTTAAA TGTAGCTGCAT TGA ATGCAGCTGCA TATAATAAACACATG Rfer_4115 4592632 - 4593072 + | MarR family transcriptional regulator Rfer_4116 4593090 - 4593479 + | hypothetical protein Rfer_4117 4594590 - 4593586 - | hypothetical protein TERM 4444 4594879 - 4594917 + G 93 -15.3 -3.72576 | gap 2 GCCGCGCAGCATCGT CGGCC-AG-CGCCCGGTGC TGG GCGCCGGGCGACTCGGGCG TTTGCTGCGCGGCCA Rfer_4118 4594784 - 4595959 + | putative hydrogenase expression/formation protein HupK Rfer_4119 4596215 - 4595946 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 4445 4596085 - 4596103 + g 90 -5.2 -5.44721 | CCGCTACAGCGCTCG CTGTCGTG CAG CACGGAAG TTTTTTTCCACTCGT TERM 4446 4597029 - 4597004 - g 71 -9.7 -3.72742 | gap 1, opp_overlap 4597004 4597020 GTATTACGAATACAA GGCCAGTGCGGC CAA GCC-CACCGACC TGGGTTGCCTGATGG Rfer_4120 4596339 - 4597361 + | uptake hydrogenase accessory protein HupU TERM 4447 4597807 - 4597846 + G 88 -13.5 -3.62096 | CACCTCCAACGGCGG CCTGCGCAGC-CGCGCAGC ACTG GCGGCGCGCGC-GCGCTGG TTTGAGCTGATCGGC TERM 4448 4597957 - 4597975 + G 78 -10.2 -3.85698 | TCGCCTGCTGGCGCG GGTGCGCG AGA TGCGCGCC TTTCTGGAGCAAACG TERM 4449 4598443 - 4598474 + G 95 -15.8 -3.86346 | CGGCCAGCCCCTGAT CCGCGCCGCCGTGT TGGC GCATGGCGGCACGG TTTATACCCGGGTGC Rfer_4121 4597376 - 4598866 + | hydrogen:quinone oxidoreductase TERM 4450 4599446 - 4599435 - g 74 -5.8 -4.57569 | opp_overlap 4599402, overlap 4599436 CGAGGCCTTGAAAAA TGCG CAGG CGCA ACTGCTGCATTCGGA TERM 4451 4599830 - 4599820 - g 81 -4.6 -5.00616 | CTGTGGGTCAAAAAA GGCA CGT CGCC CCGGTTCGAGATGGT Rfer_4122 4598872 - 4600221 + | PAS/PAC sensor signal transduction histidine kinase Rfer_4123 4600885 - 4600253 - | hypothetical protein Rfer_4124 4601526 - 4600882 - | hypothetical protein TERM 4452 4601131 - 4601096 - G 76 -6 -4.65916 | gap 1 GGCACGCGAACAAAA CGCCACAGCAGCTGATC GGC GCCCAGACGC-GCGGCG TAAGCCTCCAGAATC TERM 4453 4601194 - 4601213 + g 78 -4.9 -4.84017 | CGACAGCAGTCTTAC CTGGCGC GCAGCG GCGTCGG TTTTTCTGGCCGCTT Rfer_4125 4602181 - 4601573 - | cytochrome c, class I TERM 4454 4602087 - 4602067 - G 75 -7.6 -4.28656 | AGGTAACACCGAAAA TCACCACG ACCAG CGTGATGA GTGCCACCGTCAGCG Rfer_4126 4602804 - 4602202 - | cytochrome C oxidase, mono-heme subunit/FixO Rfer_4127 4604446 - 4602794 - | cytochrome c oxidase, subunit I Rfer_4128 4604706 - 4604446 - | hypothetical protein TERM 4455 4604575 - 4604560 - G 71 -5.4 -4.30576 | gap 1 TGGGGATGACCAAAA GTCC-CC CAT GGTGGAC AGATGTGTATCCCGG Rfer_4129 4605521 - 4604916 - | uracil-DNA glycosylase superfamily protein Rfer_4130 4605920 - 4606309 + | hypothetical protein Rfer_4131 4606350 - 4606697 + | alkylhydroperoxidase Rfer_4133 4607309 - 4607743 + | MarR family transcriptional regulator Rfer_4134 4608059 - 4609336 + | putative lipoprotein TERM 4456 4609823 - 4609812 - f 100 -7.2 -5.40072 | GCGGTCTGAAAAAAA CCGG AACG CCGG CAGCCCGCCGACCAT Rfer_4136 4609858 - 4610577 + | RNA polymerase sigma factor Rfer_4137 4610613 - 4611185 + | hypothetical protein TERM 4457 4611355 - 4611385 + G 71 -8.9 -3.77831 | gap 1, overlap 4611339 CAGGCATTGCGGCTT GCTGGGC-CGCCGC GCGG GCAGCGTGCCTGGC TTTGACTATTCGTCG Rfer_4138 4611185 - 4611586 + | cytochrome c, class I Rfer_4139 4612860 - 4611688 - | methionine gamma-lyase TERM 4458 4612004 - 4611961 - G 86 -13.8 -3.54741 | gap 1, overlap 4611948 4611944 4611945 CACCATGCCGCCAAA GCCGCCCTGCAACAGGCGCCG CGC CAGCGCATGCTGC-GGGTGAC TGGCAAGACCCGGGT Rfer_4140 4614001 - 4612877 - | C4-dicarboxylate transporter/malic acid transport protein Rfer_4141 4615182 - 4613998 - | cytochrome P450 TERM 4459 4615217 - 4615207 - R 80 -4.6 -5.04249 | opp_overlap 4615211, overlap 4615209 CCTTCAAAAAATAAA CCGC CGG GCAG CCAGTTTGCCGGCCA Rfer_4142 4616026 - 4615250 - | metallophosphoesterase TERM 4460 4615511 - 4615548 + g 70 -10.6 -3.53811 | gap 2 GGCATGGTGCGTGAT GACGACT-GTCG-GCCCC GCAT GGGGCTCGGCCAGTCGGC TTTCAAGCCAGTGGA Rfer_4143 4616562 - 4616239 - | 4Fe-4S ferredoxin, iron-sulfur binding Rfer_4144 4617360 - 4616752 - | hypothetical protein TERM 4461 4617063 - 4617046 - G 70 -9.8 -3.54543 | overlap 4617025 ACCGATGCCGGCAAA GCCGCC GTCGCT GGCGGC CCCGGTGAGCAAGCC Rfer_4145 4617629 - 4617369 - | hypothetical protein TERM 4462 4617441 - 4617431 - G 75 -8.2 -4.21607 | opp_overlap 4617436 CGTACTCAATAGAAA CGGC ATC GCCG TACCGGGCGACGAGT Rfer_4146 4617914 - 4618477 + | sigma-24 (FecI-like) Rfer_4147 4618474 - 4618932 + | putative transmembrane transcriptional regulator (anti-sigma factor) Rfer_4148 4618934 - 4619410 + | hypothetical protein TERM 4463 4619545 - 4619521 - f 95 -14.3 -3.37344 | opp_overlap 4619521 CGTTTATCCAAGTAA GGCCCGGTC GAATCAA GACCGGGCC TTGATGAGAACGAAG TERM 4464 4619521 - 4619545 + F 91 -14.3 -3.14132 | opp_overlap 4619521 CGTTTATCCAAGTAA GGCCCGGTC GAATCAA GACCGGGCC TTGATGAGAACGAAG Rfer_4149 4619591 - 4620217 + | hypothetical protein TERM 4465 4620775 - 4620743 - g 82 -11.1 -3.89501 | opp_overlap 4620764, overlap 4620744 GAACAGGTGGAGAAA CTGCTCACCGACGCG ATA CGCGGCGGCGTGCAC AAGTATTTTGACGTC TERM 4466 4620774 - 4620744 - g 79 -14.6 -2.93219 | opp_overlap 4620764, overlap 4620743 AACAGGTGGAGAAAC TGCTCACCGACGCG ATA CGCGGCGGCGTGCA CAAGTATTTTGACGT Rfer_4150 4620239 - 4620949 + | hypothetical protein TERM 4467 4620945 - 4620925 - f 70 -8.9 -3.72141 | overlap 4620928 ACATGCACATGCAAA TGACCGGCA TCA CGCCGGGCA CTGACATTGGCTAAT TERM 4468 4621148 - 4621174 + F 100 -18.1 -3.27525 | overlap 4621143 CTCACCCCTTTTTAT GCCGTCGAAGC CCAGC GCTTCGACGGC TTCGCTTTGGAGCCG TERM 4469 4621243 - 4621260 + F 71 -8.4 -3.90425 | overlap 4621235 TGACGCTCCTGGCCA GCGGGT CTGTTT ACCCGC TTGTTCATTTAGGTC Rfer_4151 4621643 - 4622827 + | NnrS TERM 4470 4623333 - 4623305 - T 70 -6.5 -4.08767 | GCCACTTGTTGAAAA GCCGCCACGTCGG TTC CCACCGTGCCGCC CAAAAGAACGGGTTC TERM 4471 4624892 - 4624851 - T 100 -16.8 -4.08945 | gap 1, overlap 4624800 4624824 4624880 ACCATGGCGTCAAAA CTGGCCGAGTAAGTGC-CT GTTTT AGAGTACTTACTCGGCCAG CAAGTCAAATTTCTT TERM 4472 4625431 - 4625407 - T 95 -10.7 -4.59773 | TCCCATCGCCAAAAA CGCGGCCAT CGCCGAC ACGGCCGCG ATGCAGCGTAGGCGA Rfer_4154 4627147 - 4625723 - | N-formimino-L-glutamate deiminase Rfer_4155 4627937 - 4627137 - | N-formylglutamate amidohydrolase Rfer_4156 4628601 - 4628041 - | hypothetical protein Rfer_4157 4629308 - 4628598 - | GntR family transcriptional regulator Rfer_4158 4630074 - 4629310 - | ABC transporter related Rfer_4159 4630739 - 4630071 - | amino acid ABC transporter permease TERM 4473 4630575 - 4630527 - G 71 -5.4 -4.34559 | gap 3, overlap 4630528 4630566 AAACAGAAGAAACAA TTGCACCAGC-A-GCGGCGTGCC GCGAAT GAC-CGCCACATAGCTGGTGCAC AGCGCATAGATGACG Rfer_4160 4631500 - 4630757 - | extracellular solute-binding protein Rfer_4161 4632274 - 4631531 - | IclR family transcriptional regulator TERM 4474 4632437 - 4632421 - R 85 -8.7 -4.44448 | opp_overlap 4632421 4632420 ACTAGTGCAAAGAAA GCCATCT CAC AGACGGC GGGATGGCCTTTGAG Rfer_4163 4635030 - 4633312 - | electron-transferring-flavoprotein dehydrogenase TERM 4475 4633498 - 4633470 - G 71 -8 -4.04319 | gap 1 TGACAAACTCATAAA CCCCG-GCCGGGC AGTA GCGCGCCTCGGGG CCGGCAAACTTGGCC TERM 4476 4634824 - 4634841 + g 100 -14.1 -4.56597 | GCCCGAGAGGATGTG GGCGCCG GGCT CGGCGCC TTTTTCCAGCACCAC Rfer_4164 4635373 - 4635101 - | putative aspartate 1-decarboxylase Rfer_4165 4636509 - 4635577 - | electron transfer flavoprotein, alpha subunit Rfer_4166 4637337 - 4636588 - | electron transfer flavoprotein beta-subunit TERM 4477 4637104 - 4637088 - G 81 -13.7 -3.40403 | TGGTCTCGACCAGAA TGGCGCG GTC CGCGCCA ATGGCCATGGCGGTG Rfer_4167 4638676 - 4637513 - | Alpha-methylacyl-CoA racemase Rfer_4168 4639900 - 4638698 - | L-carnitine dehydratase/bile acid-inducible protein F Rfer_4169 4641063 - 4639912 - | butyryl-CoA dehydrogenase TERM 4478 4640387 - 4640398 + g 72 -2.2 -4.86731 | gap 1, opp_overlap 4640371, overlap 4640387 CCGCGGCCTTCGACG CC-GC CGA GCAGG TTTTCTTTCGGCACG Rfer_4170 4641656 - 4641138 - | MaoC-like dehydratase Rfer_4171 4642613 - 4641696 - | Citryl-CoA lyase TERM 4479 4644072 - 4644091 + G 79 -8.6 -4.52589 | gap 1 CTGTTCACCGGCATT GTGGCCACC CTG GGTG-CCAC TTTTGTCTGGGACAA Rfer_4174 4643745 - 4644419 + | tripartite ATP-independent periplasmic transporter DctQ TERM 4480 4645134 - 4645172 + G 100 -9.5 -4.96848 | TCACGCCGACTGAAG CGGCGGCCATGAGCGCG GTCTA TGCGTTTGTGGTGGCCG TTTTTGTCTACAAGG Rfer_4175 4644416 - 4645699 + | TRAP dicarboxylate transporter- DctM subunit TERM 4481 4645959 - 4645975 + G 90 -4.3 -5.40474 | overlap 4645959 CACGATATTGCCTGC GGGAGGA TAG TCTCCCC TTTTTTTGAAAGACT TERM 4482 4647043 - 4647063 + G 70 -4.6 -4.57837 | gap 1, overlap 4647054 CCGTCACTTTCTTGG GCGTGGTGC TCGG GCCCC-CGC TTTTTGGGGCCATGT Rfer_4176 4645914 - 4647191 + | major facilitator transporter TERM 4483 4647982 - 4647969 - f 74 -9.5 -3.62478 | opp_overlap 4647968 4647967, overlap 4647962 CAAGCAAGGGGCAAA GCCGG ATCG CCGGC GATTAATCGATGAAC Rfer_4178 4648295 - 4649572 + | putative 4-hydroxybutyrate-CoA transferase/hydrolase Rfer_4179 4649601 - 4650509 + | citrate lyase Rfer_4180 4650549 - 4651067 + | MaoC-like dehydratase TERM 4484 4651818 - 4651807 - g 72 -2.2 -4.86731 | gap 1, opp_overlap 4651815, overlap 4651808 CGTGCCGAAAGAAAA CCTGC TCG GC-GG CGTCGAAGGCCGCGG Rfer_4181 4651142 - 4652293 + | butyryl-CoA dehydrogenase TERM 4485 4652365 - 4652382 + T 70 -6.9 -4.19371 | overlap 4652374 GTTCGACCTGAAGGT GCCTGCG GAGG CACAGGC TTTCTTGCGCCTTTC TERM 4486 4653182 - 4653217 + T 86 -11.8 -3.8377 | opp_overlap 4653175 GAACATTACGTCGGC CTGGCGCACCAGGTCG TAGA CCACTTGGTGCCCCGG TTTGATGTGCAGGTT Rfer_4184 4654462 - 4653467 - | TRAP dicarboxylate transporter, DctP subunit TERM 4487 4654267 - 4654298 + g 70 -13.1 -2.91735 | overlap 4654259 CCTTGTATAGCGAGC TGGACGGGTAAAG TTCGAT CTTCACCCGTCCA TGTGTGCCGTCTTCG TERM 4488 4654440 - 4654423 - G 74 -6.9 -4.35874 | overlap 4654416 4654424 CAAGACAACTGAAAA CCAGCGC TGCG GCGCCGA CTAAACGTTTGAGGT Rfer_4185 4654650 - 4655447 + | hypothetical protein Rfer_4186 4656316 - 4657071 + | GntR family transcriptional regulator Rfer_4187 4657277 - 4657561 + | hypothetical protein Rfer_4188 4657712 - 4657957 + | hypothetical protein TERM 4489 4659307 - 4659275 - g 72 -12 -3.33162 | gap 1, overlap 4659293 GAGGTCATCGTAGAA CTCGACGATGGCAGC ACAC GCCGCCATCG-CGTG GCGATCAACCGCGGC Rfer_4189 4658042 - 4659487 + | MmgE/PrpD Rfer_4190 4659495 - 4660730 + | L-carnitine dehydratase/bile acid-inducible protein F Rfer_4191 4660796 - 4661941 + | major facilitator transporter Rfer_4192 4662693 - 4662013 - | hypothetical protein Rfer_4193 4663396 - 4662716 - | isochorismatase hydrolase Rfer_4194 4664697 - 4663429 - | TRAP dicarboxylate transporter- DctM subunit Rfer_4195 4665229 - 4664699 - | tripartite ATP-independent periplasmic transporter DctQ Rfer_4196 4666238 - 4665237 - | TRAP dicarboxylate transporter- DctP subunit Rfer_4197 4667010 - 4666279 - | hypothetical protein Rfer_4198 4667574 - 4668779 + | L-carnitine dehydratase/bile acid-inducible protein F Rfer_4199 4668790 - 4669716 + | pyruvate carboxyltransferase Rfer_4200 4670397 - 4669903 - | hypothetical protein Rfer_4202 4672081 - 4672914 + | IstB-like ATP-binding protein TERM 4490 4672923 - 4672977 + T 85 -15.6 -2.52464 | opp_overlap 4672926 GCTTTGATGCAGAGC AAATCAGCGGGCAAGCAGCTTCGGGC TAC GCCCTACGCAGCTTGCCCACTGATGA TGAATTCACACCAAC TERM 4491 4672974 - 4672926 - T 100 -23.9 -3.84825 | opp_overlap 4672923 TTGATGCAGAGCAAA TCAGCGGGCAAGCAGCTTCGGGC TAC GCCCTACGCAGCTTGCCCACTGA TGATGAATTCACACC Rfer_4203 4674475 - 4673315 - | integrase Rfer_4204 4676492 - 4674891 - | AMP-dependent synthetase and ligase Rfer_4205 4677760 - 4676519 - | thiolase TERM 4492 4677803 - 4677854 + r 83 -10.9 -3.93782 | opp_overlap 4677817 TGCGCCGTGAAACTT GCGCGTTTGATGAAGCAGACC CGACTCAGGA GGTCTGCGTCATATGACGCGC TTTACTGTTGCGTAA Rfer_4206 4678971 - 4677856 - | saccharopine dehydrogenase TERM 4493 4677946 - 4677930 - G 70 -4.4 -4.56597 | gap 1 GCCGCGCGCCAAAAA TGGC-CG AACC CGAGCCA AATCCCACAGCCTTG Rfer_4207 4680255 - 4679014 - | acyl-CoA dehydrogenase-like TERM 4494 4682963 - 4682951 - g 73 -4.7 -4.68705 | opp_overlap 4682953, overlap 4682954 ACAAGGCCAACAAAA CAGGC GTT GCCGG GACGCTCACTGAGCG Rfer_4208 4680475 - 4683159 + | ATP-dependent transcription regulator LuxR Rfer_4209 4683276 - 4684550 + | hypothetical protein Rfer_4210 4685380 - 4684754 - | hypothetical protein TERM 4495 4687001 - 4687016 + G 84 -5.4 -5.00884 | CCTCGCATTGATGGC TTCGGC GTAC GCTGAA TTTTTTGGACAAGGT TERM 4496 4687347 - 4687333 - g 83 -2.8 -5.18371 | CGGCAGAAAAGAAAA TTGACC CTG GTTCAA GTGGCGACCGTTCGG Rfer_4211 4685691 - 4687916 + | KAP P-loop Rfer_4212 4688277 - 4688777 + | transposase TERM 4497 4688808 - 4688779 - T 71 -7.9 -3.92869 | gap 1, opp_overlap 4688779 CTACTCACCGATAAA TCCGAT-GCGAGCA GTT CGCTCGCCATGGGA TTTTCCGAAGCCGAC TERM 4498 4688779 - 4688808 + T 74 -7.2 -4.07568 | gap 1, opp_overlap 4688779 CTACTCACCGATAAA TCCGAT-GCGAGC AGTTC GCTCGCCATGGGA TTTTCCGAAGCCGAC Rfer_4213 4689246 - 4688764 - | hypothetical protein Rfer_4214 4689765 - 4689265 - | hypothetical protein Rfer_4215 4691101 - 4689974 - | hypothetical protein TERM 4499 4691597 - 4691615 + r 100 -14.6 -3.90112 | opp_overlap 4691597 GGCACAAAAGCAAAA CGCCCACT GTT AGTGGGCG TTTACTTACGGGGAA TERM 4500 4691615 - 4691597 - R 100 -14.6 -4.73108 | opp_overlap 4691597 GGCACAAAAGCAAAA CGCCCACT GTT AGTGGGCG TTTACTTACGGGGAA TERM 4501 4691622 - 4691639 + r 74 -11.3 -3.18366 | overlap 4691618 TAGTGGGCGTTTACT TACGGGG AAAG CCCCGTA TCTATTGGTTGCGCG Rfer_4216 4692142 - 4691744 - | ribosomal protein L17 Rfer_4217 4693213 - 4692224 - | DNA-directed RNA polymerase subunit alpha rpsD 4693954 - 4693331 - | 30S ribosomal protein S4 Rfer_4219 4694454 - 4694050 - | 30S ribosomal protein S11 rpsM 4694839 - 4694474 - | 30S ribosomal protein S13 TERM 4502 4694655 - 4694673 + g 78 -3 -5.03314 | opp_overlap 4694655, overlap 4694654 4694657 CCCTCAATGGTAAAT TGCGCCAC CTG GTCGCGAA TTTTTTCCAGCTCCA TERM 4503 4694693 - 4694708 + g 81 -7.6 -4.62069 | opp_overlap 4694692 TTCCAGCTCCAAATC GGTCAA ATCC TTGACC TTTTTGGAGTAAGCG Rfer_4221 4694995 - 4694864 - | ribosomal protein L36 infA 4695261 - 4695043 - | translation initiation factor IF-1 secY 4696586 - 4695276 - | preprotein translocase subunit SecY Rfer_4224 4697042 - 4696611 - | ribosomal protein L15 Rfer_4225 4697235 - 4697053 - | ribosomal protein L30 rpsE 4697774 - 4697250 - | 30S ribosomal protein S5 Rfer_4227 4698157 - 4697792 - | ribosomal protein L18P/L5E Rfer_4228 4698702 - 4698169 - | ribosomal protein L6 rpsH 4699124 - 4698729 - | 30S ribosomal protein S8 TERM 4504 4698893 - 4698869 - G 73 -9.9 -3.60296 | CACTGCCACGGTAAA CACGCAAGCCG GGA CGGCTAACGCG CTCAATACGCTCAAT Rfer_4230 4699439 - 4699143 - | ribosomal protein S14 rplE 4699996 - 4699457 - | 50S ribosomal protein L5 Rfer_4232 4700319 - 4699999 - | ribosomal protein L24 Rfer_4233 4700697 - 4700329 - | ribosomal protein L14 Rfer_4234 4701545 - 4701967 + | RNA-binding region RNP-1 TERM 4505 4702017 - 4702003 - T 81 -8.5 -4.23528 | opp_overlap 4702003, overlap 4701998 CAACCGAAAATTAAA GGGCC CATGT GGCCC TTTTTTATTTCGCCG TERM 4506 4702003 - 4702017 + T 100 -8.5 -5.63517 | opp_overlap 4702003 4701998 CAACCGAAAATTAAA GGGCC CATGT GGCCC TTTTTTATTTCGCCG Rfer_4235 4702919 - 4702314 - | hypothetical protein TERM 4507 4702495 - 4702485 - G 70 -3.2 -4.69027 | overlap 4702486 AAATGCATGCAAAAA CTCG CCT CGAA ACTCCATTCGTGGCT Rfer_4236 4703476 - 4702919 - | phosphatase kdsC Rfer_4237 4704477 - 4703476 - | KpsF/GutQ family protein TERM 4508 4704682 - 4704666 - g 75 -2.1 -5.00616 | overlap 4704667 4704668 GGCCTTGGCAAAAAA TGCGGAC GGC GTGCGCC ATCTGGGTGAGTTTG Rfer_4238 4704535 - 4706505 + | sodium/hydrogen exchanger TERM 4509 4706749 - 4706780 + G 71 -6.5 -4.1899 | gap 1, overlap 4706753 CTCCATACGGCCTGA TGTGGTCGCCGGGC TGGAT GCCC-GCGGCTTCA TTTTGGGTGCGGTGG Rfer_4239 4706543 - 4707127 + | adenine phosphoribosyltransferase Rfer_4240 4707865 - 4707143 - | hypothetical protein TERM 4510 4707806 - 4707833 + g 70 -4.1 -4.72007 | overlap 4707820 CCCCAGCCCCATACC GTCTGTCGCCG AGGCTG TGGTTACAGAC TTTCTTTTGGTGAAC Rfer_4241 4709384 - 4707975 - | tRNA modification GTPase TrmE TERM 4511 4708452 - 4708440 - G 76 -6.9 -4.44608 | opp_overlap 4708444 GTCATGCAAAAACAA GACCG CGT CGGCC GCCTCAATCACATCC TERM 4512 4708922 - 4708899 - G 70 -10.2 -3.52113 | gap 1, overlap 4708897 AGCGCCTGACAAAGA GCGGCTGGCAC TGC GGGCC-GCCGC CTCGGTACTGGCATC Rfer_4242 4711153 - 4709438 - | 60 kDa inner membrane insertion protein TERM 4513 4709809 - 4709830 + g 78 -2.1 -5.07486 | opp_overlap 4709811 4709814, overlap 4709810 4709811 4709815 GAATCATGATCGGGA AACAGCCCC CCAT GGGGTTGAC TTTTTCTTCGCGGTA TERM 4514 4710727 - 4710699 - G 76 -8.7 -4.07568 | overlap 4710724 TTGTGCGTCGGAAAA GTGCCGCCTGCCG CCC CGGCAATCAGCCC AGTTTGCGCCATGTA TERM 4515 4711018 - 4710982 - G 74 -13 -3.21416 | gap 1, opp_overlap 4711001 TATTTGCAGTAGGAA CACCCGCTGGCACACTG GACG CAG-GCACCGGCGGGTG GGCCGTTGCCGCCGT Rfer_4243 4711434 - 4711150 - | hypothetical protein Rfer_4244 4711841 - 4711431 - | hypothetical protein Rfer_4245 4712068 - 4711934 - | ribosomal protein L34