TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.349175 %AT, 4602674 nt, 45879 terms. Intergenic: 0.388164 %AT, H2T: 515295 nt, 5526 terms; T2T: 182789 nt, 4051 terms; H2H: 226108 nt, 4710 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|115522030|ref|NC_008435.1| Rhodopseudomonas palustris BisA53, complete genome (length 5505494) dnaA 641 - 2065 + | chromosomal replication initiation protein RPE_0002 2306 - 3424 + | DNA polymerase III subunit beta TERM 1 3936 - 3920 - g 75 -9.3 -4.11692 | opp_overlap 3931 GATCGACCGCGAAAA CGTCGGC TCC GCCGCCG CGTTCGGCGATCATC recF 3588 - 4727 + | recombination protein F RPE_0004 4860 - 6068 + | hypothetical protein TERM 2 8433 - 8447 + G 75 -9.2 -4.07568 | CGACGAGGTCGAGCG CGGCTG GGT CGGCCG TTTTGCCGAGGGCGA gyrB 6454 - 8895 + | DNA gyrase subunit B RPE_0006 10018 - 9047 - | signal transduction histidine kinase TERM 3 9599 - 9641 + g 83 -8.3 -4.70319 | gap 1, opp_overlap 9598 9597 CACCAACAACAGATT GGCGC-TGCGATGCTGGATC TCGC GCGCCAGCGTCGAGCGCGCC TTTTCATTTTCCTCG TERM 4 10609 - 10631 + G 70 -4.1 -4.56597 | gap 1 CGACGTCAATAGCTG GCT-GGTCGG ATTG CAGACCGAGC TTTTTCAGCAAAAGG TERM 5 10663 - 10645 - g 70 -5.9 -4.25104 | GCTTTTTCAGCAAAA GGGCGGA GCTTT TCCGACC GTAACGCTGCAGTCG TERM 6 11046 - 11062 + G 73 -13.7 -3.11272 | opp_overlap 11015 CGGCGCAGATCGCAT GGACGCC GAC GGCGTCC TATTCGCTGGTGCTG RPE_0007 10175 - 11107 + | hypothetical protein RPE_0008 11618 - 11109 - | AsnC family transcriptional regulator RPE_0009 11999 - 11769 - | hypothetical protein RPE_0010 12401 - 12084 - | hypothetical protein RPE_0011 12673 - 12494 - | cytochrome oxidase maturation protein, cbb3-type RPE_0012 14860 - 12686 - | copper-translocating P-type ATPase TERM 7 13337 - 13323 - G 70 -3.5 -4.56597 | gap 1, overlap 13324 13325 TCGGCGTGGCAAAAA GC-CGG GCTT CCGAGC CGCACTTCCTGGCCG RPE_0013 15371 - 14871 - | FixH family protein RPE_0014 16849 - 15392 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 8 16863 - 16906 + r 72 -11.8 -3.35813 | gap 1, overlap 16865 16874 ATGATGAGGGCTTCT TCGC-GTCGGCAGGTTGAGCC ATA GGCTCAACCTCTTGACCGCTA TTGATTAACCTCAAG TERM 9 16865 - 16904 + r 80 -14.4 -3.24825 | gap 1, overlap 16863 16874 GATGAGGGCTTCTTC GC-GTCGGCAGGTTGAGCC ATA GGCTCAACCTCTTGACCGC TATTGATTAACCTCA TERM 10 16874 - 16894 + r 81 -15.5 -3.04248 | overlap 16865 16863 TTCTTCGCGTCGGCA GGTTGAGCC ATA GGCTCAACC TCTTGACCGCTATTG RPE_0015 17852 - 16971 - | cytochrome c oxidase, cbb3-type, subunit III RPE_0016 18023 - 17859 - | Cbb3-type cytochrome oxidase component RPE_0017 18770 - 18036 - | cytochrome c oxidase, cbb3-type, subunit II RPE_0018 20429 - 18783 - | cytochrome c oxidase, cbb3-type, subunit I RPE_0019 21605 - 20685 - | 2-dehydropantoate 2-reductase RPE_0020 22603 - 21866 - | short-chain dehydrogenase/reductase SDR TERM 11 22226 - 22199 - G 70 -10.6 -3.61398 | gap 1 GGCGCCGGTGAAGAA GATGTTGCCG-GC CCC GCGCGGCAGCATC AACCGCGCCGCCTCG TERM 12 22636 - 22678 + r 84 -16.4 -3.06183 | opp_overlap 22636 22641 22645, overlap 22641 GTCATTGCGAGCGAA GCGAAGCAATCCAGCCAC CTGCTCT GCGACTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 13 22678 - 22636 - R 93 -20.8 -3.06183 | opp_overlap 22636 22641, overlap 22641 22645 GTCATTGCGAGCGAA GCGAAGCAATCCAGCCAC CTGCTCT GCGACTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 14 22673 - 22641 - R 70 -12.1 -3.19192 | opp_overlap 22641 22636, overlap 22636 22645 TGCGAGCGAAGCGAA GCAATCCAGCCAC CTGCTCT GCGACTGGATTGC TTCGCTTCGCTCGCA RPE_0021 23311 - 22712 - | DSBA oxidoreductase RPE_0022 23525 - 24232 + | glutathione S-transferase RPE_0023 25328 - 24432 - | short chain dehydrogenase TERM 15 24543 - 24520 - G 77 -7.4 -4.3255 | TCGGGAACGAAGAAA TCCGACATCA AGGG CGAGGTCGGA TCGACCCGGTAGTGC RPE_0024 27181 - 25421 - | gamma-glutamyltransferase TERM 16 26023 - 26048 + g 70 -8.9 -4.0162 | gap 1 GCGGCGGCAGCACCA CCGCGGACG-GC GTC GCTCGATCGCGG TTTATGGTGTCGCGC TERM 17 26896 - 26868 - G 84 -9.5 -4.4891 | gap 1, overlap 26870 TGGATCACCATAAAA CCGC-CGCCGCC GAGATT GCCGGCGCGCGG ATAGGTCACGGCCAT TERM 18 27743 - 27763 + G 83 -9.7 -4.30844 | overlap 27729 GGGCCACCGGCTATG TCGGCGGCA TCC TGTCGCTGA TTTTGGTGCTGGGCT RPE_0025 27247 - 28629 + | major facilitator transporter TERM 19 28766 - 28800 + T 78 -15.1 -2.80816 | gap 1 CCCGGCTGCGCCGGG C-GACCTCTCCCCGCT GAAG AGCGGGGAGAGGTAAG TATCATCAATGCCGG purH 30410 - 28806 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase RPE_0027 32409 - 30655 - | heparinase II/III-like TERM 20 31908 - 31879 - G 72 -8.5 -4.07568 | gap 1, overlap 31880 GTTGGCGCTGGAAAA CCGC-AGCACGCGA ATC TCGCGCGCCAGCGC GCGCAGATAGCGGCG RPE_0028 34037 - 32688 - | sun protein TERM 21 34094 - 34071 - H 74 -12.4 -3.52204 | opp_overlap 34087 CTACGGGCAAAGGAA CGATGCCGAC GCAT GTCGGCCTCG GGATGAGGCCCGTGT RPE_0029 34221 - 34469 + | hypothetical protein RPE_0030 35251 - 34487 - | hypothetical protein TERM 22 35100 - 35055 - GT 75 -4.5 -4.70583 | gap 1, opp_overlap 35061 35065 35066, overlap 35057 GTCATCAACAGAAAA TCGAGGTCGGCGCAGTCGGCGG GCG CCGGCGGCTTCGTCG-CTTCAA TGATCTGCTCCAGCA RPE_0031 35591 - 35211 - | hypothetical protein TERM 23 36102 - 36077 - g 72 -13.3 -3.17075 | CGCGCCGGAATTGAA GGCGCAATGCG CCGA CGAATTGCGCC GGGCCGAAGCCGCCA TERM 24 36243 - 36188 - g 82 -17.5 -2.89797 | gap 2, overlap 36170 36169 36185 CCCCGACAAATATCA GGGCCGCGTCGTCGC-CGACGT-CGCC ACCC AGCGCACGCCGAGCGTCGCCGCGGCGC TGATCGCCGCCGGCC RPE_0032 35733 - 36311 + | nuclease RPE_0033 38068 - 36314 - | alkaline phosphatase TERM 25 38291 - 38241 - R 70 -12.5 -2.93073 | gap 1, overlap 38238 TCTTCGCAACAACTA CGGGATTCCGGGTTCGCTCGCAGC TCAC GCTGCGCGCGC-CCCGGAATGACA GGCTTGAACCTTACC RPE_0034 39652 - 38315 - | argininosuccinate synthase RPE_0035 40534 - 39755 - | phosphoesterase, PA-phosphatase related TERM 26 40606 - 40570 - R 76 -10.2 -3.93026 | gap 2, opp_overlap 40571 40572 AATAGGGCAAGGAAA GCCGGCGAACCGCGCCGA TTG TCA-CGGGGTT-GCCGGC GGCGCCTCTGGCGGT RPE_0036 41127 - 40591 - | hypothetical protein RPE_0037 41729 - 41127 - | metal dependent phosphohydrolase TERM 27 41740 - 41776 + r 86 -7.2 -4.70659 | gap 2, opp_overlap 41730, overlap 41737 41741 ATCAATCCGTCATCG C-CATCGCGCGC-AGCGC GTC GCGCTCGCGGGCGGAGAG TTTTTCGGTCTCGGA RPE_0038 42937 - 41726 - | radical SAM protein TERM 28 43003 - 42969 - R 74 -12.9 -3.27525 | gap 1, opp_overlap 43001 43002, overlap 42964 42991 GGTGGGCAAAGCGAA GC-GTGCCCACCAGCG GCAC CAATGGTGGGCACAGC GCAAAGCGCCTTTGC TERM 29 43024 - 42991 - R 70 -11.7 -3.15861 | gap 1, opp_overlap 43001 43002, overlap 42969 42964 CACCAGCGGCACCAA TGGTGGGCACAG-CGC AAA GCGCCTTTGCCCACCC TACGCATCCGGTTCA TERM 30 43085 - 43054 - R 84 -10.9 -4.21462 | gap 1 ATCGACCACGCAAAA CGTGGATGGCCGGG TCAAG CCCGGCCATG-ACG ACGGAATTTCAGGGT RPE_0039 43727 - 43137 - | hypothetical protein TERM 31 43859 - 43905 + H 71 -10.7 -3.40403 | overlap 43860 CGCTGGATTCCGGCC CGCG-GCGCGCCGGACCAGCGCG CTC CGCTCTGG-CCGCAGCGCTCGCA TTCTGCTCGGCGGAA TERM 32 43860 - 43904 + H 74 -14.2 -2.64099 | overlap 43859 GCTGGATTCCGGCCC GCG-GCGCGCCGGACCAGCGCG CTC CGCTCTGG-CCGCAGCGCTCGC ATTCTGCTCGGCGGA TERM 33 44127 - 44145 + G 81 -3.9 -5.03715 | gap 1, overlap 44133 AAGCGGTGATCACGA TTCATGCG GCGG CGC-TGAA TTTTTTCGACATCCT RPE_0040 44027 - 45001 + | alcohol dehydrogenase TERM 34 46346 - 46365 + G 81 -7.8 -4.58395 | gap 1, overlap 46347 GCGCCATCCTCGCCG C-GCCGGTC GAG GGCCGGCTG TTTTTCGCCGGTGAA TERM 35 46347 - 46363 + G 81 -11.5 -3.90762 | overlap 46346 CGCCATCCTCGCCGC GCCGGTC GAG GGCCGGC TGTTTTTCGCCGGTG RPE_0041 45187 - 46479 + | amine oxidase RPE_0042 46784 - 46533 - | hypothetical protein RPE_0043 46848 - 47357 + | GCN5-related N-acetyltransferase TERM 36 47567 - 47581 + G 70 -3.5 -4.55295 | AAGGCAGCCGGTACG CTGGT GGTCG ACCGG TTTCTTTATACCGCG RPE_0044 47450 - 47992 + | inorganic pyrophosphatase TERM 37 48776 - 48738 - g 81 -10.8 -4.07568 | overlap 48767 CCCGGGCTGGCAAAA CCCGCCGCCCTGATCGGC ATC GCCGAAAAGGGCTACGCG ACGCTGGTGCTGACC RPE_0045 48027 - 49508 + | hypothetical protein TERM 38 49603 - 49577 - T 71 -8.6 -3.85698 | overlap 49578 CGTCCGGGCGAGAAA CGCCCGCCGC CAACTAT GCGGCGCGCA CCGTGTTCAGGAACT RPE_0046 51290 - 49590 - | methyl-accepting chemotaxis sensory transducer TERM 39 50021 - 49996 - G 83 -12.5 -4.15565 | gap 1, overlap 49997 GCCACCACCGCAAAA CCGCG-GCCGGC TTC GCCGGCGCGCGC CGCCTCGATCGTGGC TERM 40 50020 - 49997 - G 78 -16 -3.09018 | gap 1, overlap 49996 CCACCACCGCAAAAC CGCG-GCCGGC TTC GCCGGCGCGCG CCGCCTCGATCGTGG RPE_0047 52503 - 51616 - | methenyltetrahydrofolate cyclohydrolase TERM 41 51943 - 51955 + g 72 -5.5 -4.4078 | GCGCGAATGCGCGAT CGTCA CCG TGGCG TTTTCGTTGAGCAGC RPE_0048 52837 - 52514 - | hypothetical protein TERM 42 52570 - 52589 + g 71 -12.2 -3.34398 | overlap 52568 CGCCCAACAATTCGG GATTGCCG TCGA CGGCAATC TGTTTCAGCCGCGAG RPE_0049 53149 - 52859 - | protein of unknown function YGGT TERM 43 53350 - 53300 - R 100 -20.5 -3.60627 | gap 1, opp_overlap 53302 GGAGGGGACTGTAAA TGGCGCCGTCTTCGGCCGCTTCGT TCAC ACGAACCGGCCGC-GACGGGGCCA TAGCTCAGCTGGGAG RPE_0050 53721 - 53521 - | hypothetical protein RPE_0051 54736 - 53834 - | hypothetical protein RPE_0052 55350 - 54865 - | hypothetical protein TERM 44 55437 - 55421 - R 72 -2.2 -4.70319 | overlap 55415 TGACGAAAAGGAAAA GCCG GCTATTCCG CGGC CTGCGGCAATACGGC RPE_0053 56265 - 55426 - | glutamine amidotransferase RPE_0054 57189 - 56410 - | short-chain dehydrogenase/reductase SDR RPE_0055 57885 - 57409 - | hypothetical protein TERM 45 57653 - 57672 + g 73 -4.2 -4.58395 | overlap 57657 GCGTCGCCCTCCGCC CTCGTCGC CGAC GCGATCAG TTTTTGGGCGGTGCC TERM 46 58055 - 58084 + r 73 -10.7 -3.57263 | gap 1, opp_overlap 58051 58023, overlap 58058 CTCGTAGACCAGCAC CGTGTCGGCGATGC CGC GCATCGCCGCC-TG TTTCGGGGTCGCGGT RPE_0056 59440 - 58031 - | adenylate/guanylate cyclase TERM 47 58058 - 58082 + g 82 -15.7 -3.36515 | opp_overlap 58051 58023, overlap 58055 GTAGACCAGCACCGT GTCGGCGATGC CGC GCATCGCCGCC TGTTTCGGGGTCGCG TERM 48 58333 - 58293 - G 72 -6.7 -4.2461 | gap 1, opp_overlap 58303 58322, overlap 58294 ATCTTCACCAACAAA TCGTCG-CGGCCGCGCTC GGCGTT GAGCGCTGCCATCGCCGC CCGCATCTTCAGGCC RPE_0057 60843 - 59437 - | cytochrome P450 TERM 49 59703 - 59721 + g 74 -2.3 -4.72986 | overlap 59705 GCGCCGGGATGAAGG CGTTGGG CTGGT CCCAGAG TTTTTCGTGCCGGTG TERM 50 60490 - 60510 + g 70 -11.1 -3.56092 | opp_overlap 60449 60447, overlap 60489 60500 CGGCGTGAACGCCGG CGCCAGCGT ACG GCGCTGGTG TTTCCAGGGTCGTCC TERM 51 61127 - 61172 + G 75 -4.9 -4.57837 | gap 4, opp_overlap 61115, overlap 61131 61132 GAAGCGCCGAAGCGT TCGCTGTTCGCCGCCGACGGCGT CACC GCGCCGTTG-CGGC--ACA-CGA TTTTTCGGCGGATCT TERM 52 62619 - 62650 + G 83 -15.2 -3.72576 | gap 1, overlap 62619 GCCGCACCACCCAGG C-CGAACGCGCGCTG TAT CAGCGCGCCTTCGCG TTTCATAGCGGCGAG TERM 53 62619 - 62649 + G 76 -15.4 -2.83403 | overlap 62619 GCCGCACCACCCAGG CCGAACGCGCGCTG TAT CAGCGCGCCTTCGC GTTTCATAGCGGCGA RPE_0058 61106 - 62788 + | protein of unknown function DUF894, DitE RPE_0059 63023 - 62808 - | hypothetical protein RPE_0060 63403 - 69405 + | putative DNA helicase RPE_0061 69841 - 70302 + | hypothetical protein TERM 54 70444 - 70459 + T 100 -10.4 -4.74103 | TGACGCGGTGGCTCC GGTCCG GTGA CGGACC TTTTTCCGTTCAGAG TERM 55 70747 - 70718 - T 76 -12.8 -3.4072 | gap 1, opp_overlap 70718 70724 70745, overlap 70720 GAGCTTTCAGGATAA CAGCCGGGGCGGC CAAGC GCCGCCC-GGCGG TTGGATTCGGCCGTT TERM 56 70718 - 70747 + T 73 -12.8 -3.17571 | gap 1, opp_overlap 70718 70720, overlap 70724 70745 GAGCTTTCAGGATAA CAGCCGGGGCGGC CAAGC GCCGCCC-GGCGG TTGGATTCGGCCGTT TERM 57 70745 - 70720 - T 77 -14 -3.27475 | gap 1, opp_overlap 70718 70724, overlap 70718 GCTTTCAGGATAACA GCCGGGGCGGC CAAGC GCCGCCC-GGC GGTTGGATTCGGCCG RPE_0062 72496 - 70763 - | HemY domain-containing protein TERM 58 70962 - 70925 - G 77 -15.5 -3.05384 | gap 1, opp_overlap 70940, overlap 70927 TTGCCGGCGATGGAA CAGCGGCATCGCCGCGCC GGC GGCA-GGCGCCGCCGCCG CGGTCGGCGTCGACA TERM 59 70975 - 70927 - G 78 -15.8 -3.08679 | gap 1, opp_overlap 70940, overlap 70925 GCCGGCGATGGAACA GCGGCATCG-CCGCGCCGGCGGC AGGC GCCGCCGCCGCGGTCGGCGTCGA CACCGGCTTGGTGTC TERM 60 70940 - 70982 + g 80 -15.5 -3.25823 | opp_overlap 70925 70927 CAGCGGCATCGCCGC GCCGGCGGCAGGCGCCG-CCG CCG CGGTCGGCGTC-GACACCGGC TTGGTGTCGGCCGGC TERM 61 72091 - 72077 - G 83 -8.5 -4.59773 | GGCCATCGCCAAAAA GGCGC GCTTG GCGCC TTCGCGATCGCCGTC RPE_0063 73880 - 72504 - | hypothetical protein TERM 62 73242 - 73290 + g 86 -16.6 -3.54741 | overlap 73243 GCTGAATTCGGCCAG ATCGGCGGGCGGC-GGCGCGGCGG CAC CCGCCTCGCCGGCCGG-CGCCGGC TTTGCGGCGCTCATC TERM 63 73243 - 73289 + g 95 -20.1 -2.7263 | overlap 73242 CTGAATTCGGCCAGA TCGGCGGGCGGC-GGCGCGGCGG CAC CCGCCTCGCCGGCCGG-CGCCGG CTTTGCGGCGCTCAT TERM 64 73307 - 73324 + g 83 -4.8 -5.00616 | gap 1 TTGCGGCGCTCATCG CCGCCGC CAATT GCG-CGG TTTTTTCCGCCGCGG TERM 65 73330 - 73370 + g 76 -6.1 -4.57073 | gap 3 AATTGCGCGGTTTTT TCCGCCGCGGCG--GCGACG TCGT CG-CGCAACGCCGCGACCGA TTTTTCCAACGCCTC TERM 66 73905 - 73931 + r 95 -10.2 -4.52589 | gap 1, overlap 73908 TCCTCGTTGAACCTT TGCCGCCGGGT CCGCGA ACCCGGCG-CA TTTTGTCTAGCGGAC RPE_0064 74684 - 73938 - | uroporphyrinogen III synthase HEM4 TERM 67 75107 - 75136 + G 71 -12.1 -3.30124 | overlap 75087 75108 75116 ATCATCGCGCGCGCG ATGCGCGAGGCCG ATGT CGGCTTTGCGCAA TTGTCCGGCGTCGCC TERM 68 75108 - 75135 + G 74 -15.6 -2.57931 | overlap 75087 75107 75116 TCATCGCGCGCGCGA TGCGCGAGGCCG ATGT CGGCTTTGCGCA ATTGTCCGGCGTCGC RPE_0065 74813 - 75982 + | O-sialoglycoprotein endopeptidase gpsA 76221 - 77207 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 69 77357 - 77346 - g 75 -7.2 -4.33755 | opp_overlap 77346 ATGAAGATGAAGAAA GGCG ACCT CGCC TTCTATTATCACTCC RPE_0067 77211 - 77624 + | hypothetical protein TERM 70 78291 - 78237 - g 74 -15.8 -2.62616 | gap 3, opp_overlap 78267 78268 TGACGCTCGACATCA GCG-GCGACGATTTGCTGGCGGCGCCG CATC CGGCGCCGGC-GCAGACCGT-GCTCGC CGGCGACATCTTCTA RPE_0068 77843 - 78505 + | hypothetical protein TERM 71 78980 - 78993 + F 100 -9.5 -5.0538 | GCACCGACGGCGGGT GCGGC AATG GCCGC TTTTTTGGGGTGGAG TERM 72 80888 - 80858 - g 100 -11.9 -4.57569 | gap 1, overlap 80859 GCATCCTGCGAAAAA TCGCCGAG-GACGA GTCC TCGACGCTCGGCGA CACCTCGACGCTGGC TERM 73 80880 - 80859 - g 71 -12.3 -3.3422 | overlap 80858 CATCCTGCGAAAAAT CGCCGAGGA CGAG TCCTCGACG CTCGGCGACACCTCG RPE_0069 79015 - 80961 + | acetyl-CoA synthetase TERM 74 80992 - 81020 + T 100 -23.9 -5.06414 | ACGCTGATCTGCATC GCCCTTCCCCGCG CTT CGCGGGGGAGGGC TTTTTCTTGCCGCGA TERM 75 81403 - 81366 - T 85 -15.8 -3.53012 | gap 2, opp_overlap 81388, overlap 81367 81388 CGCGCTGCGCGCAAA TGTCACCTCTCCCCGCGC AAGA GCG-GGGGAGAGGTGA-A GTCACCGCGCCTCGC TERM 76 81403 - 81367 - T 84 -17.4 -2.71712 | gap 1, opp_overlap 81388, overlap 81366 81388 GCGCTGCGCGCAAAT GTCACCTCTCCCCGCGC AAGA GCG-GGGGAGAGGTGAA GTCACCGCGCCTCGC TERM 77 81768 - 81731 - T 71 -11.5 -3.53012 | gap 2, opp_overlap 81722 81721 81723, overlap 81732 CGCGCTGCGCGCAAA TGTCGACCTCTCCCCGC GCAAGA GCGGGGAGAGGT-GA-A GTACGCCGCCGTTCT RPE_0070 83118 - 82504 - | methyltransferase type 12 RPE_0071 84601 - 83681 - | hypothetical protein RPE_0072 85152 - 84598 - | hypothetical protein RPE_0073 86313 - 85168 - | acyl-CoA dehydrogenase domain-containing protein RPE_0074 86966 - 86466 - | YbhB and YbcL TERM 78 87421 - 87403 - H 82 -11 -4.08945 | ACTACCTGGGGAAAA CCGATGCA GGA TGCACCGG AAGAAAACCGCGAGG TERM 79 87783 - 87762 - g 70 -5.9 -4.21194 | gap 1, opp_overlap 87780, overlap 87747 87763 CGTCATCACGGAAAA GGTGATCGAC GTG ATCGATC-CC GCGCCGGCGCTGCTG RPE_0075 87406 - 87840 + | hypothetical protein RPE_0076 87979 - 88896 + | hypothetical protein TERM 80 88921 - 88968 + F 77 -15 -2.85874 | gap 1, overlap 88919 CCCAAGCGTAGCTAG CGAC-GACGACTGTGCGCCGT CTGATCA ACCGCGCACAGTCGTCAGTCA TCCTTCCTCTCTTTG TERM 81 89047 - 89036 - g 77 -5.8 -4.59773 | GGGCAGGTCGAAAAA CTGC TGAT GCAG GCGTTGCTCGATCCG RPE_0077 88997 - 89326 + | hypothetical protein TERM 82 90084 - 90122 + G 72 -11.8 -3.58533 | gap 1, opp_overlap 90091 AACGCCGGCGGCTTC CAGAT-CAGTCCGACCG TGCAGT CGGTCGGGCAGCATCTG TTTCCGCAATTCTAC TERM 83 90410 - 90437 + G 72 -12 -3.53012 | gap 1 GATCGGCGCCGCCTT CCGCG-GCCTGTC GCT GATGGGCGCGCGG TTTCCGCACCAGCGC RPE_0078 89385 - 91142 + | carbamoyltransferase TERM 84 91646 - 91630 - g 80 -13.7 -3.66772 | GGAAACGGTGAAGAA CGACGGC TTT GCCGTCG ACGAGAAATGGGACC RPE_0079 91124 - 91801 + | hypothetical protein RPE_0080 91837 - 92562 + | hypothetical protein TERM 85 92902 - 92914 + G 74 -10.5 -3.78934 | TCGCCATCTGCGCGC GCCGC TGA GCGGC TTCTTCTCGGCGCCC TERM 86 92933 - 92961 + G 75 -15.9 -2.78384 | overlap 92946 TTCTCGGCGCCCAAC GCGGCGCGCTACG ACG CGCAGCGCGCCGA TCTGGTCGCGACGCG TERM 87 92946 - 92994 + G 80 -17.4 -2.73542 | gap 1, overlap 92933 ACGCGGCGCGCTACG ACGCGCAGCGCGCCGATCTG-GT CGCG ACGCGGCTCGCCGCGCTGCGCGA TCGTTCGGCGTTCGA RPE_0081 92597 - 93859 + | cytochrome P450 RPE_0082 93972 - 94583 + | FkbM family methyltransferase TERM 88 95208 - 95190 - g 73 -13.1 -3.26471 | TCAGTGGGACATCAA CGCGCCG CTGCT CGGCGCG TCGTGCCGGGACGAC RPE_0083 94723 - 95466 + | nuclease RPE_0084 96387 - 95497 - | transglutaminase domain-containing protein RPE_0085 98822 - 96384 - | hypothetical protein TERM 89 98700 - 98673 - G 73 -14.2 -3.08867 | gap 1 GGAATCGCGAAGATA CTGGTCGGCGCTC TGG AAGCGCCGACC-G ACTTCGGCCGGCCCC RPE_0086 102190 - 98882 - | transglutaminase domain-containing protein RPE_0087 102564 - 102253 - | hypothetical protein TERM 90 103189 - 103232 + G 85 -5.8 -5.00884 | gap 1, overlap 103190 GTCACGCTCAATTTC GCGCTGCACGC-CCAGAGCTC GGC GAGATCCAGCGCGCGCAGCGG TTTTTTCGCCAGGAT RPE_0088 102832 - 103260 + | hypothetical protein TERM 91 103294 - 103276 - f 73 -13.2 -3.14132 | CCGCGTTTTGACCAA GCCATCGT TCT ACGATGGC CATCCGCCGCGGAGG RPE_0089 103330 - 103572 + | hypothetical protein RPE_0090 105802 - 103550 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 92 104398 - 104408 + g 70 -2.4 -4.66833 | opp_overlap 104393, overlap 104393 AGAACGAATAGCTGC CGCG CGC CTCG TTTTTCGCCTTGGAC TERM 93 106137 - 106116 - H 82 -5.7 -4.82901 | opp_overlap 106105 106119 106120, overlap 106120 CCCTCGCGACAAAAA CGATGCGGC AACG GCTGCAGCG TTGCCGGCGTGTTTG TERM 94 106515 - 106548 + G 76 -8.7 -4.25104 | gap 1, opp_overlap 106533 106534, overlap 106516 ATCAGGCGACTGGCG ACCCAGGCGAGCCAGG AAT CC-GGCTGGCCCGGGC TTTTGATCGGCGACA mepA 106170 - 107120 + | penicillin-insensitive murein endopeptidase RPE_0092 107449 - 108228 + | hypothetical protein RPE_0093 110274 - 108475 - | potassium/proton antiporter TERM 95 108843 - 108859 + g 78 -10.1 -4.07568 | opp_overlap 108842 TGTCGGTGAAGAAGC GGTCGAG CGA CTCGGCC TTTTCCGGCGGCGCC TERM 96 108924 - 108890 - G 79 -13.4 -3.67297 | overlap 108883 AGCAGATAGAGATAA TCGCCGGCGGCGACCG GCT CGGCTTCGGCCGGCGA CAATATGCGCTGGTC TERM 97 109894 - 109861 - G 88 -14.5 -3.99324 | overlap 109887 GTGCACCAGCAGAAA CACCGCGGCGGCGTC GGTC GAAGCCACCACGGCG CCGGTCAACAGCGCC RPE_0094 110652 - 111476 + | methionine aminopeptidase, type I TERM 98 111514 - 111569 + F 76 -13.2 -3.48924 | gap 1, opp_overlap 111547, overlap 111515 TCCACGCACCCCACG CGTCGTCATTCCGGG-GCGCGCGTCGC GAA GCGACGTGCGAACCCGGAATCCCGAGA TTGTCTGGCACATCG TERM 99 111515 - 111568 + F 81 -16.7 -2.6914 | gap 1, opp_overlap 111547, overlap 111514 CCACGCACCCCACGC GTCGTCATTCCGGG-GCGCGCGTCGC GAA GCGACGTGCGAACCCGGAATCCCGAG ATTGTCTGGCACATC RPE_0095 111820 - 112365 + | hypothetical protein TERM 100 112824 - 112780 - g 100 -14.1 -4.33851 | opp_overlap 112787 112817, overlap 112782 112807 112808 AAATCCGACAAGAAA GCCGCCAGCCGCCGCCGCTTC CTG AAAGTGGCTGCCGCCGGCGCC GCCGCCAGTGTCGCG TERM 101 112822 - 112782 - g 73 -15.3 -2.50813 | opp_overlap 112787 112817, overlap 112780 112807 112808 ATCCGACAAGAAAGC CGCCAGCCGCCGCCGCTTC CTG AAAGTGGCTGCCGCCGGCG CCGCCGCCAGTGTCG RPE_0096 112747 - 113889 + | TRAP dicarboxylate transporter TERM 102 113904 - 113947 + F 74 -14.5 -2.62184 | ATCGACGCCTGATCG CACGGGGCCGCGTCCGGGA TCGATC TCCCGGATGTGGCTCCGCA TCGTCTGGAGGAGCG RPE_0097 113994 - 114707 + | tripartite ATP-independent periplasmic transporter DctQ TERM 103 116063 - 116077 + G 71 -12.8 -3.22223 | opp_overlap 116051, overlap 116074 GAATCCGCCGCGGTC GGCGCC GCC GGCGCC TTCGTGCTCGGATTC RPE_0098 114704 - 116620 + | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 104 116705 - 116740 + T 76 -8.3 -4.24342 | gap 1, opp_overlap 116705 116707, overlap 116707 ATACCAACCAATCAA CACGT-CATGGCCGGG CTCGT CCCGGCCATCCACGTC TTTGTTCCTGGACGG TERM 105 116707 - 116738 + T 76 -10.9 -3.72374 | gap 1, opp_overlap 116705 116707, overlap 116705 ACCAACCAATCAACA CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGTTCCTGGAC RPE_0099 117449 - 116856 - | methyltransferase type 11 TERM 106 116943 - 116961 + g 81 -8.8 -4.47259 | AACAGAGACACCCAT GCGATCGC CAA GCCATCGC TTTTCCTCTTCTGAT RPE_0100 118131 - 117559 - | hypothetical protein RPE_0101 119133 - 118156 - | Ku domain-containing protein RPE_0102 119282 - 119512 + | hypothetical protein radC 119780 - 120496 + | DNA repair protein RadC RPE_0104 121396 - 120683 - | hypothetical protein RPE_0105 122379 - 121399 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding RPE_0106 123176 - 122391 - | binding-protein-dependent transport systems inner membrane component RPE_0107 123988 - 123173 - | ABC transporter related RPE_0108 125127 - 123997 - | ABC transporter periplasmic-binding protein RPE_0109 125254 - 126066 + | creatininase RPE_0110 126204 - 126470 + | hypothetical protein TERM 107 126534 - 126559 + T 83 -14.7 -3.41745 | opp_overlap 126534 CCCGTGTCGAACCGA CCCGCCCGG CTGTCCCC CCGGGCGGG TTACTCTTGTCGACA TERM 108 126559 - 126534 - T 74 -14.7 -2.52464 | opp_overlap 126534 CCCGTGTCGAACCGA CCCGCCCGG CTGTCCCC CCGGGCGGG TTACTCTTGTCGACA RPE_0111 128201 - 126579 - | ferredoxin-dependent glutamate synthase TERM 109 128176 - 128133 - G 71 -12.5 -3.2614 | gap 3 CAGGCCGGACAGCAA CGCCGTCGC--CACCGCGCAGA CCG TCAGCGCGATGAAGCG-CGGCG TGAAGGGAAGCAGCC TERM 110 128728 - 128746 + G 83 -3 -5.14563 | overlap 128715 128714 128731 ACCACGCCGGCGTGA CGACGCTC GGC GGGCGTTA TTTTTTCCTGCACGA TERM 111 128731 - 128743 + G 79 -6.9 -4.67552 | overlap 128715 128714 128728 ACGCCGGCGTGACGA CGCTC GGC GGGCG TTATTTTTTCCTGCA TERM 112 129049 - 129069 + G 74 -14.7 -3.01712 | ATCTGGTCGGCGACG GCGTGCGCA GCT TGCGCGCGC TGTTGGCGGAACGCG RPE_0112 128313 - 129455 + | hypothetical protein TERM 113 130670 - 130695 + G 74 -10.4 -3.8186 | opp_overlap 130670 TGGCGATCGCCGAAA GCCGCCGG ATCTATGTCG CCGGCGGC TTATTCCTTGCCATC RPE_0113 129448 - 130764 + | FolC bifunctional protein RPE_0114 130866 - 131864 + | alcohol dehydrogenase RPE_0115 135013 - 132134 - | methyltransferase type 12 TERM 114 135300 - 135285 - g 70 -11.8 -3.36803 | CAACGGCATGCAGAA CGGCCC GCGC GGGCCG TCCGAACCGCGCCCC TERM 115 135558 - 135523 - g 77 -13.1 -3.5944 | opp_overlap 135539 135542 AGCGATATGCTGAAA GGCGGCCTCGGCGGC CTGCTC GCCGGCGGCGCCGCC GGCAGCATTCTGAGC TERM 116 135539 - 135565 + G 78 -14.5 -3.28712 | gap 1, opp_overlap 135523, overlap 135542 GCGGCCTCGGCGGCC TGCTCGCCGGCG GCGC CGCCGGC-AGCA TTCTGAGCGGCGGGC RPE_0116 135250 - 135846 + | hypothetical protein TERM 117 135861 - 135889 + F 95 -15.3 -4.02075 | gap 1, opp_overlap 135877, overlap 135863 ACACGGCGACCTCAA CC-GCGCGCCGC GAATAG GCGGCGCGCTGG TTTCGTTGGTATTTC TERM 118 135863 - 135886 + F 84 -16.7 -3.04026 | opp_overlap 135877, overlap 135861 ACGGCGACCTCAACC GCGCGCCGC GAATAG GCGGCGCGC TGGTTTCGTTGGTAT RPE_0117 135940 - 136227 + | hypothetical protein RPE_0118 137006 - 136224 - | short-chain dehydrogenase/reductase SDR TERM 119 136578 - 136592 + g 76 -8.5 -4.27316 | opp_overlap 136568 CGACACGTTGACCAC GGCCG ACGGC CGGCC TTTTGCCTTGGCCGC TERM 120 137216 - 137179 - H 74 -6.2 -4.44667 | gap 1, overlap 137181 GCCGGCAACAACAAA GACGGCACA-CGCGGCA CTCTC CGCAGCAATGTGCCGGC TCGGAAGGAAATGCC TERM 121 137588 - 137621 + G 79 -13.1 -3.64703 | gap 1, opp_overlap 137572 137575, overlap 137610 CACGCTCGCCGCCGA CGGCACGCTGAGCGGT CGC GCC-CGCGGCGTGCCG TTTGCGTCGGAAGCC RPE_0119 137232 - 138299 + | acyl-CoA dehydrogenase domain-containing protein RPE_0120 138327 - 139487 + | acyl-CoA dehydrogenase domain-containing protein RPE_0121 139536 - 140339 + | enoyl-CoA hydratase/isomerase TERM 122 140888 - 140911 + G 84 -9.4 -4.56597 | GGCGGAGGCCGAACG CCGGGCCCGG GTAG CCGGACACGG TTTTTGGGGCGAGCC TERM 123 140956 - 140942 - g 89 -8.5 -5.0133 | overlap 140952 GACTGCCTTAAAAAA CCCGG AAAAA CCGGG CGATATCGTGTCCGG TERM 124 140971 - 140952 - g 70 -2 -4.67168 | overlap 140942 AAAAACCCGGAAAAA CCGGGC GATATCGT GTCCGG GATTGGGCGATTCAC RPE_0122 140475 - 141239 + | nuclease (SNase-like) TERM 125 141543 - 141513 - g 79 -8.9 -4.30576 | gap 1 CGCTGATCAGCAAAA CGGTCGAGCGGCTG GTAG CGGCCTC-CGACCG ACCCGAACTGGCCTA TERM 126 141967 - 141994 + G 78 -9.9 -4.08706 | gap 1 GCTGAAGGCGGCGCG GTCCT-CGGGCG ATCCG CGCTCGCAGGAC TTTCTATCGTCGCAC RPE_0123 141260 - 142741 + | peptidase M48, Ste24p TERM 127 142802 - 142783 - T 100 -16.4 -4.72272 | opp_overlap 142783 CTCGCGCAGCAAAAA GCCCGGCC TTGC GGCCGGGC TTTGCTACTCACGAT TERM 128 142783 - 142802 + T 93 -16.4 -3.78953 | opp_overlap 142783 CTCGCGCAGCAAAAA GCCCGGCC TTGC GGCCGGGC TTTGCTACTCACGAT RPE_0124 143909 - 142833 - | CarD family transcriptional regulator TERM 129 143592 - 143602 + g 71 -3.2 -4.70879 | GGGCTTCACGGCAGT CTTC GGA GAGG TTTTTGGCATTTCAC TERM 130 144060 - 144039 - R 78 -15.9 -2.77999 | overlap 144034 GAGTTAGTAACATCA TCCTGCCGG TTTC CCGGCAGGA GCGTTGAACAGGGTT RPE_0125 144465 - 144127 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein RPE_0126 144809 - 144540 - | RNA-binding S4 domain-containing protein RPE_0127 148208 - 144858 - | helicase domain-containing protein TERM 131 145170 - 145209 + g 72 -12 -3.55444 | gap 1, opp_overlap 145169 145168 CGGGCGGCGGAAATC GGGCTTGCGGTCCCGGCGG CCG CGGTCGGGAC-GCTCGCCC TTTGCCGGCTCGCCG TERM 132 147260 - 147250 - G 81 -5.4 -4.7497 | CCCAGCGAGGAAAAA TCCA ACC TGGA ATTGCGCCATTGCAG TERM 133 147862 - 147883 + g 79 -13.1 -3.72576 | opp_overlap 147851 147849 AAGACGTGGCCGCGC TCCAGATCG GCGG CGATCTGGA TTTCATCGACGGCGA RPE_0128 149472 - 148561 - | hypothetical protein TERM 134 149513 - 149485 - H 78 -6.6 -4.57073 | gap 1, opp_overlap 149511, overlap 149487 CATCTGTTTGAAAAA CTCCAAC-CCGCG CAGA CGCGGCGATGGCG ACCCTGACGCTTTTA TERM 135 149656 - 149642 - H 90 -8.5 -4.91109 | overlap 149643 CGGGGAGTACAAAAA CGCCC TCCGC GGGCG GGCTGCGCTTGACGC rpmB 149773 - 150078 + | 50S ribosomal protein L28 TERM 136 150136 - 150159 + F 100 -18.2 -4.7254 | opp_overlap 150129 TCAAGATATCCAGAG CGGCCGGATC TTAT GATCCGGCCG TTTTTCGTGCGCCAT TERM 137 150796 - 150812 + G 72 -15.1 -2.70932 | CCTCCGGACTGACGC GGCGCGG CGA CCGCGCC TACTTCAAGGAAGGC RPE_0130 150348 - 153530 + | multi-sensor hybrid histidine kinase RPE_0131 154686 - 153619 - | hypothetical protein TERM 138 153935 - 153959 + g 70 -13.5 -3.02144 | opp_overlap 153950 153951 TCGAAATCCTCGGTG CGCCGGATGGT GAA ACCGGCCGGCG TCTTGCCGCCGATCA TERM 139 154498 - 154527 + g 74 -12.1 -3.61178 | gap 1, opp_overlap 154485 AATGCGCGAACGGTC GCGCAGGTCGAACG AGC CGATCGGCC-GCGC TTTGACCTCGATCGA TERM 140 154557 - 154545 - G 70 -10.5 -3.65351 | opp_overlap 154549 154550 154556 TGACCTCGATCGAAA CCGGC GCG GCCGG CGTCAACGCCTCCGC TERM 141 154792 - 154736 - R 74 -15 -2.62396 | CATCCGCCGAGAGCA CGGCGCGCTCCCTCGCCCC-GCCCTTGC GGG GAGAGGGCTGGGGTGAGGG-GCGACCCG ACCAGAGAGCTCAAT TERM 142 154906 - 154860 - R 86 -17.9 -2.52464 | GCTTCGCTGAAGCTA CGCCGGGCGACCTCTCCCCGC GCAGG GCGGGGAGAGGTTGCGCTGAG CGTGCAGCCCAGTCG RPE_0132 156843 - 154945 - | cobalt chelatase, pCobT subunit TERM 143 154996 - 155016 + g 100 -11.9 -4.68593 | CGTCGGAGCGTGGGT CTCGCTGAA CAA TTCGGCGAG TTTTTCGGTGATGGC TERM 144 155322 - 155344 + g 76 -6.2 -4.56597 | opp_overlap 155319 TCTCCTTCAACAGCC CCTCGCGC ATCATCA GCCCGAGG TTTTTGCGCGCGCGA TERM 145 156126 - 156139 + g 79 -3.7 -4.92757 | overlap 156106 AGTCGGCGCCGGACT GGTCG TTCT CGCCC TTTTGTTCTTCGTCC RPE_0133 157340 - 156840 - | hypothetical protein RPE_0134 157847 - 157353 - | hypothetical protein RPE_0135 158969 - 157974 - | cobalt chelatase, pCobS small subunit TERM 146 158108 - 158124 + g 75 -9.4 -4.07885 | opp_overlap 158117 AGGCGAAGCCGATAT CGCCGA AGATC TCGGCG TTTTCCGCCCAGGTG RPE_0136 159260 - 159898 + | DedA family protein TERM 147 159958 - 159929 - T 71 -8.4 -3.92641 | opp_overlap 159948, overlap 159916 159904 AAGCCGACCGACAAA GCCGACCGCGGC TTAGGC GCCGCGGACCAC GGTCTTGAGATAATT RPE_0137 160588 - 159941 - | heat shock protein DnaJ domain-containing protein TERM 148 160159 - 160205 + g 72 -12.9 -3.19192 | gap 2 TGCGCGTTTCGGGCT TGGGCTCG-CTCGCGGC-GCCGG GGC CCGGCCGCCACGAGGCGCGGCCG TTCAATTCGCTGAAC TERM 149 160925 - 160888 - g 73 -13.3 -3.21747 | opp_overlap 160887 160890 CCATCGCATGATCAA CGCGCTGCTCGCCGACG AATT CGCCGGCAAGCTGCATG CTCTTGCAATCAAGG RPE_0138 160694 - 160966 + | morphology/transcription regulator BolA family protein RPE_0139 162500 - 161055 - | hypothetical protein TERM 150 161532 - 161502 - G 75 -14 -3.28712 | GGGTGCCCGTGAGAA GGCCGAAGCCTGCA CGC TGGAGCCTTCGGCC TCGGACAGCCCGGTC RPE_0140 163765 - 162803 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 151 163590 - 163631 + g 73 -6.5 -4.30809 | gap 2 TGGGTCTTCTGCCAG GGCGTCAACGCCGCGTAGA GCTCGG TCAGCGCGGCGA-G-CGCC TTTTCCTCGATCTTG RPE_0141 164892 - 163912 - | tyrosine recombinase XerD RPE_0142 165108 - 164902 - | hypothetical protein RPE_0143 165257 - 165874 + | shikimate kinase TERM 152 166208 - 166178 - g 70 -6.1 -4.28774 | overlap 166179 TGATCGAAGCCAAAA TCGAGCGCAATGA TCTGG TGATCGCGCTCGG TGGCGGCGTGGTCGG RPE_0144 165871 - 167016 + | 3-dehydroquinate synthase TERM 153 167703 - 167691 - g 71 -9.1 -3.76641 | opp_overlap 167690 ACGGCAAGATGGAAA TCGGC GAG GCCGA ATATATCCAGAACGT TERM 154 167898 - 167874 - g 73 -10.7 -3.67402 | overlap 167872 AGAAGCCGGAAAACA TCGTCGGCGTG TTG CACGCCAAGGA CCTGTTGCGCGCGAT RPE_0145 167093 - 168436 + | hypothetical protein RPE_0146 171489 - 168646 - | preprotein translocase subunit SecA TERM 155 168771 - 168803 + g 71 -14.7 -2.52516 | overlap 168771 168791 CCTTGTCGGCGTCGT CGGCCGGCGCCAGCG CCA CGCTGGCGAAGGCCA GTTCGTCCTCGCCGG TERM 156 168771 - 168804 + g 76 -14.5 -3.21218 | gap 1, overlap 168771 168791 CCTTGTCGGCGTCGT C-GGCCGGCGCCAGCG CCA CGCTGGCGAAGGCCAG TTCGTCCTCGCCGGT RPE_0147 171831 - 172760 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 157 172862 - 172816 - f 74 -14.4 -2.53876 | gap 1, opp_overlap 172816 172818 GGCGAGCGCAATCGA GCCGGATGAGGGGGCACCGCG TTCTGC CGAGACGCCCCCTCA-CCGTC TTTCTCGCTTCGCTC TERM 158 172816 - 172862 + F 78 -10 -3.98083 | gap 1, opp_overlap 172816, overlap 172818 GGCGAGCGCAATCGA GCCGGATGAGGGGGCACCGCG TTCTGC CGAGACGCCCCCTCA-CCGTC TTTCTCGCTTCGCTC TERM 159 172818 - 172860 + F 73 -11.2 -3.57808 | gap 1, opp_overlap 172816, overlap 172816 CGAGCGCAATCGAGC CGGATGAGGGGGCACCGCG TTCTGC CGAGACGCCCCCTCA-CCG TCTTTCTCGCTTCGC TERM 160 174049 - 174039 - g 72 -8.2 -4.07568 | overlap 174040 TCCGCGTCGCCAAAA GCGG CGC CCGC GATCCGTCCTATGAC TERM 161 174154 - 174112 - g 73 -13.3 -3.28416 | gap 1 GACCATCCAGATCAA GGTC-GCGCTCGGCCTCGGC AAAG GCCGCGACCGCGTGCTGACC TGCGACCTCACCAAG argJ 172964 - 174205 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein RPE_0149 174333 - 174746 + | mutator MutT protein TERM 162 174822 - 174789 - T 74 -5.9 -4.46212 | gap 1, opp_overlap 174789 174793 174793, overlap 174791 TCGTCGACGACAAAA GTCGTCATGCGCGGGC TTG ACCCGCGCATC-CATC TTCTTACGCAGACAG RPE_0150 175736 - 174897 - | methyltransferase type 11 TERM 163 175087 - 175097 + g 83 -2.4 -5.15634 | overlap 175081 CTGGTCAAGGTGGCG CGGC GCA GCGG TTTTTTGCTGCGCTC TERM 164 175243 - 175219 - G 85 -13.5 -4.13945 | overlap 175220 ACCGGCAGTGCAAAA CCGGCGCGTTG CAG CAGCGCGCCGA GATCGCGCAAATCCG TERM 165 175242 - 175220 - G 76 -14.8 -3.08046 | overlap 175219 CCGGCAGTGCAAAAC CGGCGCGTTG CAG CAGCGCGCCG AGATCGCGCAAATCC RPE_0151 176090 - 175782 - | hypothetical protein TERM 166 176688 - 176714 + G 78 -10 -4.08216 | overlap 176687 GCCGATCTGATCGTG CCGGTGCCGCTG CAT TGGCGGCGCGGG TTTTCGCGGCGCTAC RPE_0152 176232 - 177053 + | phosphoribosyltransferase RPE_0153 177085 - 177360 + | glutaredoxin GrxC RPE_0154 177357 - 178247 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 167 178401 - 178379 - g 73 -4.2 -4.62471 | gap 1, overlap 178380 178383 GTCAAGGTTCAAAAA GCGATCATG GCGCCG CA-GATCGC GCGCACCAAGGGCCG RPE_0155 178244 - 178753 + | hypothetical protein RPE_0156 179866 - 178967 - | hypothetical protein TERM 168 180159 - 180185 + r 90 -19.5 -2.52543 | CGCTACGCCGGGCGA CCTCTCCCCGC GCAGA GCGGGGAGAGG TGAATTGGGCCGCGT RPE_0157 180972 - 180211 - | 3-demethylubiquinone-9 3-methyltransferase TERM 169 181032 - 181010 - H 75 -3.2 -4.82901 | opp_overlap 181029, overlap 181011 GGGCGGTGACAAAAA TGCGGAACGC CGA GGGTGCCGCG AGAGTTCGGGTGATC RPE_0158 181302 - 182555 + | aspartate kinase RPE_0159 182877 - 185144 + | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 170 185404 - 185377 - g 73 -10.6 -3.72695 | gap 1 AGGTGCGCGACGAAA TCGGCGA-CATCG ATT CGCTGATCGCCGA CCCCGACAGCGATCC TERM 171 186108 - 186092 - g 77 -7.9 -4.42238 | CGAGCGCAAGGAAAA GGTCGGC TCC GGCGACC GCTCCGAGCGCATCC prfA 185202 - 186281 + | peptide chain release factor 1 TERM 172 186389 - 186354 - f 91 -9.7 -4.65895 | gap 1, opp_overlap 186374, overlap 186356 GCGTCCAGTGAAAAA GGCGTGGATGGCCGGG ACGAG CCCGGCCATG-ACGAC CGACAGGTCGGCTAT TERM 173 186541 - 186519 - g 71 -12.8 -3.28791 | opp_overlap 186513 186511 ATTGCGCGCGCAGAA CATCGAGACC CCC GATCTCGATG CCCGGCTCTTGGTCG TERM 174 187260 - 187285 + G 71 -3.2 -4.57569 | gap 1, overlap 187261 187262 CGGGTTGACGCTCGA TG-CGCCGCGG CCCGA CCTCGGCGGTA TTTTTCGCGCGGTGA RPE_0161 186382 - 187323 + | HemK family modification methylase RPE_0162 187801 - 188556 + | hypothetical protein TERM 175 188591 - 188612 + T 95 -13 -4.30576 | CTGATCCAATCGTGA TGGCCGGG CTTTGT CCCGGCCA TTTTCGTGATCGCCG RPE_0163 189421 - 188654 - | methyltransferase type 11 RPE_0164 189572 - 190339 + | hydroxyacylglutathione hydrolase RPE_0165 190336 - 190779 + | hypothetical protein RPE_0166 191825 - 190950 - | hypothetical protein RPE_0167 192579 - 191854 - | acetoacetyl-CoA reductase TERM 176 192747 - 192778 + r 78 -10.1 -4.04174 | opp_overlap 192752, overlap 192752 GACGAACTTCAAGAC AAAAACGCCCGGC ACGGTG GCCGGGCGTTCTG TTTCATTGTGTGCAG TERM 177 192773 - 192752 - R 100 -14.4 -5.09762 | opp_overlap 192747 192752 ACTTCAAGACAAAAA CGCCCGGC ACGGTG GCCGGGCG TTCTGTTTCATTGTG TERM 178 192752 - 192773 + r 89 -14.4 -3.91905 | opp_overlap 192752, overlap 192747 ACTTCAAGACAAAAA CGCCCGGC ACGGTG GCCGGGCG TTCTGTTTCATTGTG RPE_0168 194019 - 192841 - | acetyl-CoA acetyltransferase RPE_0169 194338 - 194943 + | polyhydroxyalkanoate synthesis repressor PhaR RPE_0171 197212 - 195524 - | diguanylate cyclase/phosphodiesterase RPE_0172 197467 - 197751 + | hypothetical protein RPE_0173 198335 - 197754 - | hypothetical protein rpmF 198730 - 198548 - | 50S ribosomal protein L32 mtgA 199601 - 198882 - | monofunctional biosynthetic peptidoglycan transglycosylase TERM 179 199905 - 199929 + G 100 -10.6 -4.77036 | CCGCTATTCCACGCT CGGCGGCGGC AAGCG GCTGCGGCCG TTTTTGGTGGTCGAG TERM 180 199944 - 199983 + G 72 -13.4 -3.14132 | GTTTTTGGTGGTCGA GAGCGCGGCGGTGTTCGG CGTG CCGCGCGCGGCGGCGCTC TTGGTCGGCGCGGCG RPE_0176 199747 - 200673 + | polyprenyl synthetase RPE_0177 200680 - 201360 + | hypothetical protein RPE_0178 201438 - 201716 + | hypothetical protein TERM 181 201776 - 201739 - T 100 -18.3 -4.3586 | opp_overlap 201745, overlap 201741 GCAGCGATAGCAAAA GTGGATGCCGGCGCGGC TCAG GCCGCGCGGGCTTCCTC GTCGAAAGCGATGTC TERM 182 201774 - 201741 - T 90 -19.5 -2.52138 | opp_overlap 201745, overlap 201739 AGCGATAGCAAAAGT GGATGCCGGCGCGGC TCAG GCCGCGCGGGCTTCC TCGTCGAAAGCGATG TERM 183 201745 - 201770 + T 89 -17.5 -3.21099 | opp_overlap 201741 201739 ATAGCAAAAGTGGAT GCCGGCGCGGC TCAG GCCGCGCGGGC TTCCTCGTCGAAAGC RPE_0179 202196 - 201756 - | BLUF domain-containing protein RPE_0180 203907 - 202216 - | diguanylate cyclase/phosphodiesterase TERM 184 203061 - 203075 + g 72 -8.5 -4.08945 | overlap 203040 TCTTGGCGCGGCTCA GCGCC AGATC GGCGC TTTTCAGCACCTCAT TERM 185 204235 - 204277 + G 86 -16.3 -3.53444 | gap 1, opp_overlap 204232 CGGCGGATTCAAGTC GCGCCAGCGATCCTGCTGCT GCTC GGCGGCATGG-CGCTGGCGC TTTCGCCGGGGATGC RPE_0181 204154 - 205761 + | Na+/H+ antiporter TERM 186 206066 - 206101 + F 84 -16.2 -3.10344 | gap 1, opp_overlap 206057, overlap 206077 AAAGCAGGGCGATTT GCGACCGA-CGAGGCGG TGA CCGCCTTGTTCGATCGC TATCTTGCATGAGGA TERM 187 206077 - 206089 + F 74 -10.5 -3.68836 | overlap 206066 ATTTGCGACCGACGA GGCGG TGA CCGCC TTGTTCGATCGCTAT RPE_0182 206110 - 206388 + | plasmid stabilization system protein ispG 207706 - 206426 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 188 207137 - 207185 + g 80 -15.2 -3.4252 | gap 2, opp_overlap 207122 CGCCGACTGCACCAT CGCC-TCGCGG-GTCACCGCGCGG ACG TCGCGCGGGGTCGCCGAGACGGCG TTCTCGTCCATCAGC RPE_0184 207921 - 208178 + | hypothetical protein RPE_0185 208301 - 208837 + | hypothetical protein RPE_0186 209804 - 208842 - | hypothetical protein TERM 189 209484 - 209457 - G 77 -12.7 -3.72324 | overlap 209475 209477 CAGCGCCACGAAGAA CGGCGCGGTGT AGAGAA ACACCGCGGCG CGCGACGCCGTGGTC RPE_0187 210336 - 209833 - | ferric uptake regulator family protein TERM 190 210127 - 210095 - G 74 -5.6 -4.46212 | opp_overlap 210124, overlap 210096 TTCTGCATCAGAAAA TCCAGCGCGCGAT-AC ACC GTGATCG-GCGCCGGG CGCGGCATGGCCCGC TERM 191 210960 - 210926 - g 73 -12.9 -3.30619 | overlap 210913 AACCATCCGGGAGAA CGTCCG-CGCCGCGATC CAC GA-CGCGCCGGCGGACG CGCCCAAGAAGGAAC RPE_0188 210507 - 210989 + | MarR family transcriptional regulator RPE_0189 210982 - 212139 + | secretion protein HlyD family protein TERM 192 212482 - 212426 - f 90 -18.1 -2.83822 | gap 2 CTCAGCCGACAACCA GCGAGGCTCAGCCTCACCTCTCCCCGC TCTGC GCGGGGAGAGGTGAA-CCG-GCTACGC GTAGCGTGGCCGGTC RPE_0190 212715 - 214274 + | EmrB/QacA family drug resistance transporter RPE_0191 215111 - 214374 - | superoxide dismutase TERM 193 215246 - 215265 + r 100 -16.4 -4.81083 | opp_overlap 215246 GCTTCCCAAAAGAAA GGGCGGCC TCGC GGCCGCCC TTTTTGCTGATTGCG TERM 194 215265 - 215246 - R 100 -16.4 -4.64861 | opp_overlap 215246 GCTTCCCAAAAGAAA GGGCGGCC TCGC GGCCGCCC TTTTTGCTGATTGCG RPE_0192 217460 - 215295 - | polynucleotide phosphorylase/polyadenylase TERM 195 217732 - 217706 - R 91 -16.6 -3.59979 | overlap 217707 CTGCTGGACTGTAAA TCGTGCAGGCCA CGA TGGCCTGCACGC GATGTGACGTGGAGT TERM 196 217731 - 217707 - R 90 -20.1 -2.75844 | overlap 217706 TGCTGGACTGTAAAT CGTGCAGGCCA CGA TGGCCTGCACG CGATGTGACGTGGAG TERM 197 217814 - 217795 - R 100 -12.8 -4.66609 | opp_overlap 217793 GAGCCCACGCAAAAA CGCGCGCC AAAA AGCGCGCG AATCTGGTTCAGCGA rpsO 218092 - 217823 - | 30S ribosomal protein S15 truB 219207 - 218095 - | tRNA pseudouridine synthase B TERM 198 218288 - 218262 - G 75 -11.4 -3.65812 | GTCCGCGCAACACAA CGGCCTGGCCCC GAT GGAGCCTTGCCG CATCGGCCCGTGTGA TERM 199 218382 - 218349 - G 75 -9.6 -4.14392 | gap 2, opp_overlap 218349 TCTCAACGGGCAAAA GC-GCA-TCGGCGAGG TTGC CCTCGCCGGCTGCCGC TCTATTGCACAAAGC TERM 200 218512 - 218490 - G 78 -10.5 -4.15565 | CGTAGCAGCCCAAAA GCCGGCCCA TGTCG CGGGCCAGC GAGCGCACATAGGTG rbfA 219620 - 219204 - | ribosome-binding factor A infB 222496 - 219815 - | translation initiation factor IF-2 TERM 201 222466 - 222479 + g 75 -3.1 -4.8048 | overlap 222426 GGCTGACGCTCAAAG TCTTG TCGC CAGGA TTTTTCGTATCAACC RPE_0197 223235 - 222489 - | hypothetical protein TERM 202 222915 - 222874 - G 81 -10.7 -4.08767 | gap 1 TCGACTTTGGTAAAA CCCGCCACCAGCTGGCCGGC CTT GCCGGCCATC-GCCAGCGCG TCCCGCACGCCACGC TERM 203 223172 - 223200 + g 71 -12.4 -3.32343 | gap 1, overlap 223150 223169 CCGCGCACATCCGTT CGGTCC-CGGGCT TTGC AGCCCGCGGTCCG TTGTCCAGATCTGCC nusA 224867 - 223251 - | transcription elongation factor NusA RPE_0199 225689 - 224871 - | hypothetical protein TERM 204 225791 - 225768 - R 100 -11 -5.4833 | gap 1 GCAGGTAATAAAAAA GAGCGGGTCCC GGA GGG-CCCACTC TCAATACAGCCTGTA trmB 226717 - 225965 - | tRNA (guanine-N(7))-methyltransferase TERM 205 226683 - 226634 - G 100 -15.8 -4.56597 | gap 3 GCGGCGCCCGAAAAA CGAGCCGTGGCCG-CGCGA-GGCGG AAT CCGCGGTCGCGTCCGCCA-GGCTCG CGTCCGATGCATCAC RPE_0201 227257 - 226835 - | XRE family transcriptional regulator TERM 206 227357 - 227342 - R 70 -10.4 -3.5774 | ATTCAACCCGTCAAA CCCGTG TTTC CACGGG AGAGTGAAATGCAGT lnt 229080 - 227467 - | apolipoprotein N-acyltransferase TERM 207 228200 - 228184 - G 83 -2.1 -5.24129 | overlap 228186 GCGGGTGAGAAAAAA CGGGAAC GCG GATTCCG GCCAGATCAGAATGC RPE_0203 230189 - 229077 - | CBS domain-containing protein RPE_0204 230710 - 230192 - | hypothetical protein RPE_0205 231833 - 230778 - | PhoH family protein RPE_0206 233235 - 231838 - | RNA modification protein TERM 208 232848 - 232869 + g 83 -12.9 -3.86015 | GGAATTCGGTTTCCA GCGCGCGGC CGTC GCGGCGCGC TTTCTCCAAAAGCTC TERM 209 233277 - 233260 - R 74 -4.7 -4.62471 | overlap 233262 GGGAAGCGGTAAAAA GCGGCGC GGTC ACGGCGC AACGCTCAGATATAG RPE_0207 234013 - 233339 - | HAD family hydrolase TERM 210 233437 - 233400 - G 88 -16.1 -3.65902 | CGCATGTCATCGAAA CTCGCCGCGGCGCCGGC GGCG GTCAGCGCGGCGGCGTG ATCCGGGCGGCAATG RPE_0208 234447 - 234010 - | ferric uptake regulator family protein RPE_0209 235001 - 234516 - | ribosomal-protein-alanine acetyltransferase RPE_0210 235734 - 235039 - | peptidase M22, glycoprotease TERM 211 235142 - 235111 - G 80 -15.8 -3.31726 | gap 1, overlap 235109 CGGCCGCAGATAATA CGGCCGCGCCGGCGC GTT GC-CCGGCGTGACCG CGGCGCCAAGCCAGG TERM 212 235222 - 235202 - G 71 -9.6 -3.78775 | GTGCCGACCAGCAAA GGCGGCGG CGCGT CCGCCGGC CAGCGCTCGGCCAGC RPE_0211 236422 - 235856 - | NifU domain-containing protein RPE_0212 238148 - 236517 - | ABC transporter related TERM 213 237231 - 237271 + g 70 -11.2 -3.53563 | gap 2, overlap 237240 TGCCGTGTCGGCCTG CTGCAACGCCTGCTCGCGGC GGC GCT-CGACCAGGCG-TGCGG TTTCGCCGGCGGTGT RPE_0213 238835 - 238293 - | UspA domain-containing protein RPE_0214 239214 - 239459 + | hypothetical protein TERM 214 239581 - 239569 - g 70 -6.2 -4.17089 | GCCAAAGCCGCAAAA GCGC TCAAG GCGC AGGTAAAGGCGAAGG RPE_0215 239440 - 239865 + | hypothetical protein RPE_0216 240964 - 239915 - | tryptophanyl-tRNA synthetase TERM 215 240193 - 240218 + g 79 -6.7 -4.63218 | overlap 240194 TGCCGACCAGATTGT CGGCCTCCGGG CGCG CCTCGAGGCCC TTTTCTTCCGACGGC RPE_0217 242590 - 241034 - | integral membrane protein MviN TERM 216 241930 - 241910 - G 75 -3.3 -4.72272 | gap 1, overlap 241911 241912 CGCCTTGAGCAAAAA TTCG-CGC ATCGGG GCGTCGAA CGTCACCCGCAGCGG RPE_0218 242731 - 243732 + | ribokinase-like domain-containing protein RPE_0220 246374 - 245172 - | beta-lactamase TERM 217 245811 - 245784 - G 71 -14.1 -2.87132 | GTGGTCGCGCAGATA GGCCTCGAGCG TCTTCC CGCTCGCGGCC TCGACGGCGCGGCCG RPE_0221 246526 - 246858 + | hypothetical protein TERM 218 248093 - 248054 - g 73 -6.3 -4.37658 | gap 1, overlap 248041 248055 248058 AAGCGGTCGAGAAAA CCGAGCGCCACATCGCCG ACGCG CTGCAAGGCGGCGC-CAG CATCGTGATCGGCGG RPE_0222 246994 - 248487 + | succinic semialdehyde dehydrogenase RPE_0223 249156 - 248539 - | hypothetical protein TERM 219 249189 - 249149 - G 72 -8.4 -4.06419 | gap 1, overlap 249152 CCGCCGGACAAAGAA CAACACATTCCACG-CGGC CGGT ACGGTCGTGAAATGCGTTG GTCTCGCTAGGCGAT TERM 220 249590 - 249561 - H 77 -13 -3.56643 | TCCATACTGTTGAAA CTCTCATGGCCT GGCCGA AGACCATGAGAG GCTCGTCCAACGTAG TERM 221 249940 - 249928 - g 79 -4.8 -4.71401 | AAGAAAAGGACAAAA TCGC GCGGG GCGA TCGGCGGCGCGATCT RPE_0224 249739 - 251943 + | 1A family penicillin-binding protein RPE_0225 253031 - 252195 - | hypothetical protein RPE_0226 254584 - 253256 - | polyhydroxyalkanoate depolymerase, intracellular RPE_0227 255511 - 254702 - | hypothetical protein RPE_0228 256323 - 255517 - | ABC transporter related RPE_0229 256464 - 257798 + | periplasmic sensor signal transduction histidine kinase TERM 222 258219 - 258193 - g 72 -14.4 -3.05844 | opp_overlap 258185 CCGGCTACGGTAACA TCGCCACCGCGG TGA CCGCGGTGAAGA TGGGCGCGTTCGATT RPE_0230 257907 - 258461 + | response regulator receiver protein RPE_0231 259199 - 258666 - | hypothetical protein TERM 223 258906 - 258882 - G 71 -3.3 -4.66833 | opp_overlap 258882 258885, overlap 258884 258885 GGTGAAGGCGAAAAA CAGCCGGTCGC AGT GCAGCCGGTAG TCTTCCCATTTGTGA RPE_0232 259299 - 260417 + | von Willebrand factor, type A TERM 224 261201 - 261215 + G 74 -5.7 -4.56597 | opp_overlap 261191 261213 ACAATCGGCCAGGAG CGGAT GACCA ATCCG TTTTTGACCGGCGAG RPE_0233 260508 - 261236 + | beta-lactamase domain-containing protein TERM 225 261255 - 261311 + T 75 -14 -3.09635 | gap 2, opp_overlap 261260 261265, overlap 261261 261265 261269 AGTTCGTCATTGCGA GCGAAGCGAAGCAATCCAGGAGCTGC AGAATGC GTGGCTCATGGATTGCTTCG--TCGC TTCGCTCCTCGCAAT TERM 226 261261 - 261307 + T 86 -18.2 -2.55544 | opp_overlap 261260 261265, overlap 261255 261265 261269 TCATTGCGAGCGAAG CGAAGCAATCCAGGAGCTGC AGAATGC GTGGCTCATGGATTGCTTCG TCGCTTCGCTCCTCG TERM 227 261265 - 261303 + T 70 -11.8 -3.22388 | opp_overlap 261265 261260, overlap 261261 261255 261269 TGCGAGCGAAGCGAA GCAATCCAGGAGCTGC AGAATGC GTGGCTCATGGATTGC TTCGTCGCTTCGCTC TERM 228 261378 - 261361 - T 90 -14.1 -3.96892 | opp_overlap 261361 AATCGTTACGACAAA GGCCGCC CGAG GGCGGCC TTTGCGTTGGAATTG TERM 229 261361 - 261378 + T 84 -14.1 -3.76839 | opp_overlap 261361 AATCGTTACGACAAA GGCCGCC CGAG GGCGGCC TTTGCGTTGGAATTG RPE_0234 261828 - 261412 - | hypothetical protein RPE_0235 264417 - 261919 - | PAS/PAC sensor hybrid histidine kinase RPE_0236 265704 - 264541 - | PHB depolymerase family esterase TERM 230 265236 - 265268 + g 71 -3.3 -4.65916 | gap 1 GCATCACCGCGCTCA TC-GCGCCGCCGGC GGACAG GCCGGTGACGAAGA TTTTCTTGCGGTCGA RPE_0237 267275 - 265857 - | chromate transporter TERM 231 266600 - 266546 - G 77 -13.5 -3.55563 | opp_overlap 266568, overlap 266550 ACGCCACCGGCGAAA GC-CACAGCACCAGCCAGATCGCCGCG ACC CGCAGCG-TCGCGCCGGGGCTGCGCGC AGCGTGTGATCCGGC TERM 232 267497 - 267450 - H 79 -11.4 -3.85698 | gap 2, opp_overlap 267451, overlap 267451 CGCGCGGCGGACAAA GCCTCGAAGGATG--GGCCGCG GGCACT CGGGGCCGTCATCCTTCGAGGT TTCTGCGCAGCGCCA TERM 233 267496 - 267451 - H 77 -14.9 -2.91276 | gap 2, opp_overlap 267451, overlap 267450 GCGCGGCGGACAAAG CCTCGAAGGATG--GGCCGCG GGCACT CGGGGCCGTCATCCTTCGAGG TTTCTGCGCAGCGCC TERM 234 267451 - 267496 + H 91 -15.6 -3.85698 | gap 2, opp_overlap 267451 267450 GCGCGGCGGACAAAG CCTCGAAGGATG--GGCCGCGG GCAC TCGGGGCCGTCATCCTTCGAGG TTTCTGCGCAGCGCC RPE_0238 267920 - 268381 + | hypothetical protein RPE_0239 269560 - 268388 - | hypothetical protein TERM 235 269503 - 269519 + g 78 -10.1 -4.10552 | AATTATCCATGAGGT CGTTCGG CTG CCGGACG TTTGATTTGATCGCA TERM 236 269570 - 269550 - G 76 -14.7 -3.1478 | overlap 269548 ATGAGCGGATCAAGA GCACGGCGC ATT GCGCCATGC AAATCCGCCGGGGCA RPE_0240 269651 - 271018 + | MmgE/PrpD family protein RPE_0241 271122 - 271787 + | putative PAS/PAC sensor protein RPE_0242 273193 - 271823 - | peptidoglycan binding domain-containing protein TERM 237 272068 - 272052 - G 70 -3.5 -4.56597 | overlap 272053 GCCGCGCCGGAAAAA CCCGGGC CCG GCGCCGG CACTAGCGCCAGATC TERM 238 272742 - 272770 + g 70 -2.3 -4.57569 | overlap 272748 CTCCATCTCGCGCCA TTGGCGTCGGC CGACTGC GTCGGCACCAG TTTTTGCGGCAGTCC TERM 239 273424 - 273456 + G 70 -13.3 -2.98823 | CCTCGGTGCTGGTGA TCGGCGCCGGCGGGC TGG GCGCCCCGGTGCTGA TGTATCTCGCCGCCG RPE_0243 273321 - 274121 + | UBA/THIF-type NAD/FAD binding protein RPE_0244 275385 - 274384 - | glyoxylate reductase TERM 240 275522 - 275563 + H 81 -4.4 -5.00616 | opp_overlap 275516 275517, overlap 275517 275525 TGCCCGAAACTGCCG CGAT-CATGCGATCGCAGCG TCTT CGC-GCGGTGGCCTGGGTCG TTTTTTGCGGAGCAG RPE_0245 275775 - 276302 + | hypothetical protein RPE_0246 279211 - 276491 - | DNA mismatch repair protein TERM 241 277205 - 277172 - G 84 -17.5 -3.14132 | gap 1, opp_overlap 277172 277204 GGCCGCCGGCACGAA CGCGCCGATCTGCGCC AAC AGCGC-GATCAGCGCG TTCTGCCGCAGAAAC TERM 242 277172 - 277205 + g 78 -14.6 -3.28712 | gap 1, opp_overlap 277172, overlap 277204 GGCCGCCGGCACGAA CGCGCCGATCTGCGC CAACA GCGC-GATCAGCGCG TTCTGCCGCAGAAAC TERM 243 277883 - 277856 - G 72 -8.3 -4.15044 | opp_overlap 277845 GTTGGCGCGAACAAA GCCGCCGTCGC GCTTTT GCAGCGGCAGC TCGTCGGCCAGTGCG TERM 244 278338 - 278386 + g 81 -8.8 -4.57073 | gap 1, overlap 278339 TCGTGGCGGGATCGA TCGCCATGGT-GGCGCCGGCG ATTTCGCG CGACGGCGGCGACAATGGCGG TTTTTGGCCCAGCTG TERM 245 279244 - 279254 + H 76 -6.8 -4.42974 | overlap 279232 279249 AAAGTTTCGCGGGGC GGCT CGA AGCC TTTCTTCTGTCTGGG TERM 246 279719 - 279736 + G 83 -8.3 -4.60487 | overlap 279694 CCCGCCGAACCGATC CGGGCGG TCGA CAGCCCG TTTTTCCAAGTCGTG TERM 247 280337 - 280309 - g 72 -5.3 -4.31412 | gap 1, opp_overlap 280327 AAACAGTCATGAAAA GGCAGTCTACAG CTATCT CGGT-GACTGCC GCTTTGACATCGAAC TERM 248 280983 - 280993 + G 72 -8.2 -4.03413 | opp_overlap 280982 CTGTGCTCGAAAACT CCGC CGC GCGG TTTGTGTCACGCAAT RPE_0247 279635 - 281911 + | hypothetical protein TERM 249 283066 - 283087 + G 74 -10.2 -3.76224 | CCTGCCTGCGCCAGC TCGGCATC ACTGAG GATGCCGA TTTCGTCAATCCGCA RPE_0248 282057 - 283265 + | beta-ketoadipyl CoA thiolase RPE_0249 284429 - 283332 - | transposase, IS4 family protein TERM 250 284333 - 284294 - G 77 -5.7 -4.57569 | gap 2 TCATCCGCGCAAAAA GCG-CCATGT-CGGTGCAA CTGG TCGCCCCGCACAAGGTCGC CATCAGCGCGATGAA RPE_0250 284714 - 285814 + | transposase, IS4 family protein TERM 251 285977 - 285992 + F 70 -11.8 -3.21747 | overlap 285989 CCCGTTTTCCGATTC GCGCGG CTTC CCGCGC TTGCTGCTGCGCTGC TERM 252 286756 - 286733 - g 77 -5.8 -4.59511 | overlap 286723 286735 AAGATCGGCGAAAAA GTCGCGGCCG AGGT CGGCTGCAGC GACAACGCCACGGCG RPE_0251 286058 - 287566 + | carboxylesterase, type B RPE_0252 288791 - 287832 - | LysR family transcriptional regulator TERM 253 287941 - 287929 - G 75 -4.7 -4.58395 | overlap 287930 287931 CCCAGCGCGGAAAAA TCCGC GCT GCGGG GCGAGGTGGTACGGA RPE_0253 289003 - 291195 + | catalase/peroxidase HPI TERM 254 291329 - 291302 - f 90 -15.6 -3.75153 | opp_overlap 291302 TCGGCTCAACTGAAA GGCCCGCATGAT GCGA ATCGTGCGGGCC TTTTCTTGGCGGGCC TERM 255 291302 - 291329 + F 100 -17.8 -4.63218 | opp_overlap 291302 TCGGCTCAACTGAAA GGCCCGCATGAT GCGA ATCGTGCGGGCC TTTTCTTGGCGGGCC TERM 256 291510 - 291522 + F 78 -10.5 -4.08216 | TAGTTGCGTGGGCAC GGCGC TGC GCGCC TTTTGCCCACCCTAC TERM 257 291661 - 291643 - f 75 -11.6 -3.5393 | AGTAGGGTGGGCAAA GGTGCGCC GCA GGCGCGCC GTGCCCACGCGTGAC TERM 258 291788 - 291800 + F 78 -10.5 -4.08216 | TAGTTGCGTGGGCAC GGCGC TGC GCGCC TTTTGCCCACCCTAC TERM 259 292239 - 292210 - g 77 -13.5 -3.53224 | gap 1, opp_overlap 292217 TATCCGGCCGCCAAA CTGGCGC-CGCCGC TCG GCGACGTGCGCCGG GCGAAATATCTGTAC RPE_0254 291970 - 292575 + | glutathione S-transferase RPE_0255 293602 - 292757 - | enoyl-(acyl carrier protein) reductase RPE_0256 295017 - 293791 - | 3-oxoacyl-(acyl carrier protein) synthase I TERM 260 294350 - 294340 - G 70 -8.2 -3.96148 | overlap 294341 GCCGGCGATGACAAA GCCG TCG CGGC TGACATCATAGGGCC TERM 261 295061 - 295090 + r 71 -12.7 -3.06183 | overlap 295059 ATGTGTTTGGTTTGC GCCCGCCGCCGCT TGTT GGCGCCGGCGAGC TTAGCTCAGCCTCCC RPE_0257 295626 - 295096 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase RPE_0258 295959 - 296450 + | ferric uptake regulator family protein RPE_0259 296976 - 296467 - | OsmC family protein TERM 262 298577 - 298590 + G 70 -2.3 -4.63542 | opp_overlap 298573, overlap 298573 TCCGCGAGAATCCGG AAGCC AACC GGCTG TTTTTGGAGATTCTC TERM 263 299007 - 298996 - g 75 -4.4 -4.65895 | TGGCTGATCGAAAAA CATC TGAC GATG TCGACGGTGGCGCAG RPE_0260 297238 - 300033 + | PII uridylyl-transferase RPE_0261 302824 - 300089 - | multi-sensor hybrid histidine kinase TERM 264 300705 - 300674 - G 70 -3.7 -4.56597 | overlap 300685 CTTGGTGGTGAAAAA CGGCT-CGAACACGC GATC ACG-GATCGCAGCCG GAATGCCGGTTCCGG TERM 265 300905 - 300872 - G 72 -13.1 -3.20382 | gap 1 GGCGAGATTGATCAA GGCGCT-GCCGAGCTG GGA CGGATCGGCCAGCGCC GGCAAGAGATCCGAG TERM 266 301833 - 301819 - G 73 -12.8 -3.47841 | overlap 301805 ACACCGACAGCAGAA CCGCGG CGA CCGCGG CAACCAGCGCCACGA RPE_0262 303364 - 302936 - | hypothetical protein TERM 267 303718 - 303745 + G 79 -7 -4.60797 | gap 1, overlap 303720 GTGGTCGCCGGGGCC TATGGCGGCT-AC AGC GTCAGCCGCCGGA TTTTGTATATCCAGG RPE_0263 303442 - 303804 + | hypothetical protein TERM 268 303805 - 303819 + F 70 -12.8 -2.91681 | GTCTGGCTCGCCTAG CCGCCG GCG CGGCGG TCTGTGCCATTGCCA RPE_0264 303921 - 305144 + | hypothetical protein RPE_0265 305575 - 305330 - | hypothetical protein RPE_0266 305745 - 307037 + | gamma-glutamyl phosphate reductase nadD 307068 - 307718 + | nicotinic acid mononucleotide adenylyltransferase RPE_0268 307874 - 308236 + | iojap-like protein TERM 269 308574 - 308559 - g 76 -6 -4.56597 | overlap 308561 GGCTTCGCGCAAAAA CTCGCC GGCT GGCGCG ATCAATCGGTGCCGC RPE_0269 308286 - 308768 + | hypothetical protein TERM 270 309201 - 309227 + G 81 -16.5 -3.13403 | overlap 309199 TGGCCGCCTTGCAAC GCGCCGGCCGC CGCGC GCCGCCGGCGC TCTTGGTGCGACCGG RPE_0270 308765 - 310120 + | peptidase M23B TERM 271 311141 - 311166 + G 72 -13.9 -3.02144 | TCGGCTCCGGCAACG GCGCGCTGCGG CTGA CCACGGCGCGC TATTACACGCCATCG RPE_0271 310117 - 311490 + | carboxyl-terminal protease TERM 272 311551 - 311514 - f 73 -11.3 -3.57144 | gap 1, opp_overlap 311522, overlap 311522 CGGTTCACTCCGAAA CTGCAAAA-GGGCGGCCC GCG AGGTCGCCCTTTTTGCTG CCCGGCTTCGATGGT TERM 273 311542 - 311522 - f 81 -10.3 -4.24002 | opp_overlap 311522, overlap 311514 TCCGAAACTGCAAAA GGGCGGCCC GCG AGGTCGCCC TTTTTGCTGCCCGGC TERM 274 311522 - 311542 + F 100 -11.8 -4.72272 | opp_overlap 311522 311514 TCCGAAACTGCAAAA GGGCGGCC CGCGA GGTCGCCC TTTTTGCTGCCCGGC TERM 275 311825 - 311801 - g 83 -9.2 -4.3739 | overlap 311803 GACGTTCCGAGAAAA CCCGACCGGC GGCGA GCCGATCGCG CGGGTCGCGATCAAG TERM 276 312761 - 312728 - g 78 -10.4 -4.07568 | gap 2 GCTGGCCCGCGAAAA CGGCAACG-CGAT-CG GAAC CGCATCGGCGCTGCCG GTCTCGATCGAGCGG RPE_0272 311652 - 312863 + | protein of unknown function DUF610, YibQ RPE_0273 312928 - 313458 + | dinucleoside polyphosphate hydrolase RPE_0274 314567 - 313455 - | hypothetical protein TERM 277 314009 - 314027 + g 79 -4.4 -4.74706 | AGATCGGCCGCAATT TGGCGATC CGG GCGCGCCA TTTTTCACTGTTGCG RPE_0275 314740 - 315687 + | NAD-dependent epimerase/dehydratase TERM 278 316041 - 316059 + G 70 -10.2 -3.63744 | opp_overlap 316041, overlap 316039 316042 AATTGTGGGAAGAGA CCGGCGTG CAT CACGCCGA TATTTTGGGCGAGAC TERM 279 316108 - 316131 + G 72 -8.8 -4.07568 | gap 1 TTTCCCGCCCTATGA TGGCCC-GCCG CAT CGGCTGGGGCA TTTTCGCGGCCAGCG RPE_0276 315815 - 316345 + | dinucleoside polyphosphate hydrolase RPE_0277 317326 - 316349 - | delta-aminolevulinic acid dehydratase TERM 280 317665 - 317709 + r 78 -12 -3.72695 | gap 1, opp_overlap 317655 317654 317652 317690 317699 AATAGCGGCTCGGCG CCTCGCCGGTG-AGGCGGCGA AACA TCGCCGCAAACGCCGCCGGGG TTTCATAGCCGAGAT RPE_0278 318445 - 317642 - | AraC family transcriptional regulator RPE_0279 318956 - 318549 - | F0F1 ATP synthase subunit epsilon RPE_0280 320481 - 319051 - | F0F1 ATP synthase subunit beta RPE_0281 321432 - 320554 - | F0F1 ATP synthase subunit gamma RPE_0282 323109 - 321577 - | F0F1 ATP synthase subunit alpha RPE_0283 323669 - 323109 - | F0F1 ATP synthase subunit delta TERM 281 323731 - 323710 - H 85 -10.1 -4.3255 | TCCGCAAGGAAGAAA TCGTCGCCA CGTT TGGCGCCGA GCGATTAAGCCCTTG TERM 282 323820 - 323863 + H 75 -11.6 -3.61398 | gap 1, opp_overlap 323801 323821, overlap 323821 CGGCTTTGCTAACAT AGCG-CGCGGACAGGTGCAAC ACG GTGGCACGTGCCCGCGTCGCC TTGTTGCAGGCAACG TERM 283 323862 - 323821 - H 88 -17.3 -3.06696 | gap 1, opp_overlap 323821 323820, overlap 323801 GGCTTTGCTAACATA GCG-CGCGGACAGGTGCAAC ACG GTGGCACGTGCCCGCGTCGC CTTGTTGCAGGCAAC TERM 284 323821 - 323862 + H 78 -15.1 -2.76696 | gap 1, opp_overlap 323801 323821, overlap 323820 GGCTTTGCTAACATA GCG-CGCGGACAGGTGCAAC ACG GTGGCACGTGCCCGCGTCGC CTTGTTGCAGGCAAC RPE_0284 323850 - 324146 + | hypothetical protein RPE_0285 324343 - 324822 + | rare lipoprotein A TERM 285 324943 - 324906 - T 82 -14.2 -3.29511 | opp_overlap 324911, overlap 324911 CGTATTGCTGCAGAA TAAAAGGCCTGCCGTC GCCAAT GACGGCGGGCCTTTTT CTTTTGGCTCAAGCG TERM 286 324938 - 324911 - T 100 -14.1 -4.77165 | opp_overlap 324911, overlap 324906 TGCTGCAGAATAAAA GGCCTGCCGTC GCCAAT GACGGCGGGCC TTTTTCTTTTGGCTC TERM 287 324911 - 324938 + T 100 -17 -5.48213 | opp_overlap 324911 324906 TGCTGCAGAATAAAA GGCCTGCCGTCG CCAA TGACGGCGGGCC TTTTTCTTTTGGCTC RPE_0286 327162 - 324964 - | primosome assembly protein PriA TERM 288 325391 - 325366 - G 70 -3.9 -4.56597 | gap 1, opp_overlap 325383, overlap 325367 GTGGGTCTGCAAAAA GCCGACGCCC CTGCCCT GGTCG-CGGC CGGCGCGGCCGATCA TERM 289 325900 - 325887 - G 81 -5.2 -4.72497 | GATTGAGGAATAAAA GCGC CTGTTC GCGC CGCTCGATGGCAAGG TERM 290 326254 - 326236 - G 73 -9.5 -3.91144 | overlap 326239 TGCATAGGGCAGAAA CAGCGCC GAGCG GGCGCCG ACCACCACCGGCGCT TERM 291 327396 - 327379 - g 70 -6.3 -4.25104 | GCCGGCGCATCAAAA GATCTCA CCGC CGAGATC GTGCGCTGGCTCGGC xerC 327268 - 328296 + | site-specific tyrosine recombinase XerC RPE_0288 328421 - 329014 + | hypothetical protein RPE_0289 329589 - 329047 - | hypothetical protein TERM 292 329355 - 329309 - G 72 -5.2 -4.3898 | gap 3, overlap 329314 329316 ATCACCTGCAGAAAA GCGAAGATGGCG-A-CGCC-GGC GACG ACCTGGCCCTGCGCCATCATCGC CAGTGCGACGAGCTT RPE_0290 331135 - 329732 - | dihydrolipoamide dehydrogenase TERM 293 330635 - 330658 + g 81 -5.2 -4.75372 | gap 1, opp_overlap 330632 CTTGGGAAGCGACAG CGCGCCG-GTC GAC GACACGATGCG TTTTTCGTCGATGGT RPE_0291 331412 - 331137 - | hypothetical protein RPE_0292 332204 - 331458 - | short-chain dehydrogenase/reductase SDR RPE_0293 332657 - 332247 - | hypothetical protein RPE_0294 333039 - 332728 - | hypothetical protein RPE_0295 333293 - 333036 - | hypothetical protein TERM 294 333124 - 333098 - G 78 -14.5 -3.21872 | gap 1, overlap 333093 333091 GCCAAACATAGGCAA CCT-GCTCGCGG TTTG CCGCGAGCCAGG ACTGCACCTCCCGCA RPE_0296 334614 - 333307 - | dihydrolipoamide acetyltransferase TERM 295 333948 - 333983 + g 75 -9.7 -4.08945 | gap 1 TGTTCTGTACGTCCT TGAGCCGGC-GCGCGA TGGTC TGGCGCAGCCGGGTCA TTTTCACGCGCTCCT TERM 296 334045 - 334084 + g 87 -17 -3.35679 | GCGGACCTGCACCGC GGCGGCGGGGGCGCTGAC CGGG GTCGGCGCCGAGGCCGCC TTCTCGATCGCCGCC TERM 297 334653 - 334638 - R 74 -11.8 -3.53012 | opp_overlap 334626 CCCTCTTGGGTGAAA GCCGGC GCGC GCCGGC CCTTCGCCCTGATCA kgd 337677 - 334720 - | alpha-ketoglutarate decarboxylase TERM 298 336960 - 337004 + g 77 -10.1 -3.9941 | gap 1 AACCCTCGGTCTCGA TCAGCTTCATCAG-GATGGC GCGGCG GCCTTCGCGGGTGAAGCTGA TTTCCTTGTCCGGGC RPE_0298 338690 - 337806 - | succinyl-CoA synthetase, alpha subunit sucC 339890 - 338691 - | succinyl-CoA synthetase subunit beta RPE_0300 340915 - 339947 - | malate dehydrogenase RPE_0301 342239 - 341052 - | AFG1 family ATPase TERM 299 342003 - 341982 - G 71 -2.9 -4.57837 | opp_overlap 341987, overlap 341985 ACAGCTGTCGAAAAA CAGGTCCAT CAGC ATGGTCTTG CCGCGGCCGACCTCG TERM 300 342150 - 342138 - G 70 -6.2 -4.24002 | overlap 342130 CTCCAAAGCCGAAAA CGCC TCGAC GGCG CGCGCCTGCGCCGGG TERM 301 342503 - 342478 - R 76 -9.7 -4.10161 | gap 1, overlap 342479 GATGAGCGTGGAAAA TGGCGTGA-GGC CGC GCCGTCACGCCG ACAGCGCGTAGGAAT TERM 302 342502 - 342479 - R 71 -13.2 -3.05775 | gap 1, overlap 342478 ATGAGCGTGGAAAAT GGCGTGA-GGC CGC GCCGTCACGCC GACAGCGCGTAGGAA RPE_0302 343032 - 342496 - | 2',5' RNA ligase TERM 303 343149 - 343161 + r 74 -4.7 -4.652 | overlap 343148 TCCCTGGTGTTGTGG CCGGC TTT GGCGG TTTTTCAGCTCCTTT RPE_0303 343822 - 343166 - | GDSL family lipase TERM 304 344402 - 344460 + G 78 -6.4 -4.63218 | opp_overlap 344450 CGATCCGGCGATCCT GGTCGCCGATGAGCCGACCGGCAATCTC GAC GAGGCTACCGGCAAGCAGATCGTCGACC TTTTGTTCGCCAAAC RPE_0304 343872 - 344609 + | ABC transporter related TERM 305 344678 - 344733 + F 90 -18.5 -3.09516 | gap 2, opp_overlap 344683 344688 344692, overlap 344684 344688 344692 ACCCCGTCATTGCGA GCGAAGCGAAGCAATCCAGCGGCGCCG CGCG CGGAGCTCCTGGATTGCTTCG-T-CGC TTCGCTCCTCGCAAA TERM 306 344730 - 344683 - f 88 -17 -3.06183 | opp_overlap 344678 344684 344688 344692, overlap 344688 344692 GTCATTGCGAGCGAA GCGAAGCAATCCAGCGGCGCCG CGCG CGGAGCTCCTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 307 344684 - 344729 + F 100 -22.7 -2.55544 | opp_overlap 344683 344688 344692, overlap 344678 344688 344692 TCATTGCGAGCGAAG CGAAGCAATCCAGCGGCGCCG CGCG CGGAGCTCCTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 308 344725 - 344688 - f 76 -14.1 -3.19192 | opp_overlap 344684 344678 344688 344692, overlap 344683 344692 TGCGAGCGAAGCGAA GCAATCCAGCGGCGCCG CGCG CGGAGCTCCTGGATTGC TTCGTCGCTTCGCTC TERM 309 344688 - 344725 + F 86 -16.3 -3.22388 | opp_overlap 344688 344683 344692, overlap 344684 344678 344692 TGCGAGCGAAGCGAA GCAATCCAGCGGCGCCG CGCG CGGAGCTCCTGGATTGC TTCGTCGCTTCGCTC TERM 310 345210 - 345252 + G 72 -13.3 -3.14344 | gap 2 GACGCCGGAATTGCT CGCCGAG-CG-CGACGGCGCC CAT GGCGCCGCCGCCGACGCCGCG TTGCTGGCGCGGCTC RPE_0305 344722 - 347355 + | hypothetical protein RPE_0306 347658 - 348473 + | hypothetical protein TERM 311 348507 - 348528 + F 100 -18.7 -5.10933 | opp_overlap 348502 ACGCGACACACTCGA GCCCCGGCC TCAC GGCCGGGGC TTTTGTTTTGACTGG RPE_0307 348662 - 349201 + | GCN5-related N-acetyltransferase RPE_0308 349746 - 349372 - | hypothetical protein TERM 312 350034 - 350059 + r 77 -2.3 -5.00616 | overlap 350037 CGAGTCAATCCCCAT CCTGGGCCGGC ATTT GCTGGCCCTTC TTTTTTGCCGAAGGC TERM 313 350037 - 350056 + r 100 -12.8 -4.61482 | overlap 350034 GTCAATCCCCATCCT GGGCCGGC ATTT GCTGGCCC TTCTTTTTTGCCGAA RPE_0309 350975 - 350148 - | hypothetical protein TERM 314 350889 - 350863 - G 79 -10.8 -3.95424 | AGGATCAAGACCAAA GTCGCGCCCATC AGC GATGCGCCCGAC CAGTGTCCCAATCCG TERM 315 351192 - 351160 - R 100 -15.7 -4.14392 | gap 1 GCGCAAGCTCGAAAA CGTCAATGGCCGGG ACAGAG CCCGGCCA-TGACG TAGAGATATGGCCCT RPE_0310 353941 - 351224 - | aconitate hydratase TERM 316 352984 - 352970 - G 71 -3.4 -4.59773 | opp_overlap 352978, overlap 352972 GTCGACCGGGAAAAA GCCGCA GGT CGCGCC ATATTCCGGCGCCAT RPE_0311 354168 - 354770 + | cytochrome c biogenesis protein CcmA TERM 317 355093 - 355122 + G 70 -8.5 -3.99374 | gap 1 TTGTGGATCGCGCTG CGCGTCGG-CGGCG GGG CGCTGATCGGCGTG TTGTTCTTCCTCGCC RPE_0312 355045 - 355713 + | heme exporter protein CcmB TERM 318 356090 - 356126 + G 84 -13.6 -3.89501 | CTTGGCCGACGTCTC GGCGAAGGCGGCGGCG CCGAT CGGCGCGGCCTTCACC TTTCTGGCGCTGTTC RPE_0313 355809 - 356561 + | heme exporter protein CcmC TERM 319 356680 - 356669 - g 77 -7.2 -4.57073 | overlap 356670 CACCGGCGTCAAAAA GCGC GGCT GCGC GAACTCGAACAGGCC RPE_0314 356561 - 356740 + | Heme exporter protein D (CcmD) TERM 320 356885 - 356926 + G 74 -12.1 -3.53012 | gap 1 CCTCGGCGCTGATCG GCCGC-CCGGCGCCGGCGAC GAC GCTGCCGGCGCTGCAGGGGC TTTCCCGCGACGGCG TERM 321 357127 - 357093 - g 95 -20 -2.77899 | opp_overlap 357100, overlap 357096 GGTCGGCATCAACTA CAAGGACGCGCCGGAC AAT GCCCGGCGCTTCCTCG GCCGCTACGGCAACC TERM 322 357124 - 357096 - g 90 -18.1 -3.54029 | opp_overlap 357100, overlap 357093 CGGCATCAACTACAA GGACGCGCCGGAC AAT GCCCGGCGCTTCC TCGGCCGCTACGGCA TERM 323 357100 - 357120 + G 73 -13.9 -3.14564 | opp_overlap 357096 357093 ATCAACTACAAGGAC GCGCCGGAC AAT GCCCGGCGC TTCCTCGGCCGCTAC RPE_0315 356737 - 357333 + | periplasmic protein thiol TERM 324 357351 - 357367 + F 72 -3.7 -4.55118 | opp_overlap 357352, overlap 357352 GGCAGCGGCGCCTAA ACGAAAA TAT TTTTCGG TTTTATCTGCGGTTC RPE_0316 357461 - 357826 + | hypothetical protein RPE_0317 358628 - 358005 - | intracellular septation protein A RPE_0318 359587 - 358637 - | signal recognition particle-docking protein FtsY TERM 325 358848 - 358859 + g 72 -5.8 -4.3739 | opp_overlap 358838, overlap 358838 358837 GAAAACGCCTCGACC TGCG AGAG CGCA TTTTGTCCCACCGTG RPE_0319 359616 - 360452 + | pseudouridine synthase RPE_0320 361889 - 360624 - | MiaB-like tRNA modifying enzyme TERM 326 361033 - 361074 + g 72 -13 -3.18681 | gap 2, opp_overlap 360994 361012, overlap 361034 CGCAGCCGCCGCAAT TCGGCG-CACAG-CGCGACG GAAT CGGCGCGGCTGTGACGCCGC TTCATCCGCTTCAGG TERM 327 361034 - 361073 + g 77 -16.5 -2.50994 | gap 2, opp_overlap 360994 361012, overlap 361033 GCAGCCGCCGCAATT CGGCG-CACAG-CGCGACG GAAT CGGCGCGGCTGTGACGCCG CTTCATCCGCTTCAG TERM 328 361209 - 361168 - G 70 -10.1 -3.72695 | gap 1, overlap 361169 361202 ACCGCGTCGAGCAAA TC-GCGGTCGGCCTCGATCG AAT CGATCGACGACAGCCGCAGA CGACGGAGCTCCGGC TERM 329 361576 - 361611 + g 75 -14 -3.33261 | gap 1, opp_overlap 361575 361576 CCTGCGTTGTCAAAG GCTGCGC-GCGTGGC GCGCCAG GCCTCGCCGCGCAGC TTGTCGGCGTTGCCG dapF 362758 - 361892 - | diaminopimelate epimerase TERM 330 363238 - 363202 - g 77 -13.6 -3.55444 | GGTTGACCCCGGAAA GGCCGCGGCGGAATCC CCCGC GAAGCCCGCCGAGGCC ACCAAGCCGACCGAC RPE_0322 362999 - 363823 + | transcription activator, effector binding TERM 331 364459 - 364445 - g 91 -11.4 -4.20148 | overlap 364446 ATTATCGGAAAACAA CCGCCA GCC TGGCGG CATCGGCGCCGGTGG RPE_0323 363829 - 364539 + | hypothetical protein TERM 332 364572 - 364603 + T 71 -10.9 -3.41222 | gap 1, overlap 364570 ATCAACTTTTCGATT CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGAGCTTGCCG RPE_0324 365740 - 364682 - | hypothetical protein RPE_0325 366097 - 366228 + | antenna complex, alpha/beta subunit RPE_0326 366254 - 366451 + | antenna complex, alpha/beta subunit TERM 333 366516 - 366469 - f 70 -9.8 -3.62096 | gap 1, opp_overlap 366472 366474 366475, overlap 366475 TTTCACTAGCTGAAA GACCAACGGCCCCCGAAAGTCCC TGC AGGACTT-CGGGGGCCGATCTTT TTGGAACTATCCCGG TERM 334 366472 - 366513 + F 100 -15.2 -4.61231 | gap 1, opp_overlap 366469 366475, overlap 366474 366475 CACTAGCTGAAAGAC CAACGGCCCCCGAAAGTCC CTGCA GGACTT-CGGGGGCCGATC TTTTTGGAACTATCC TERM 335 366474 - 366511 + F 100 -17.8 -3.91908 | gap 1, opp_overlap 366469 366475, overlap 366472 366475 CTAGCTGAAAGACCA ACGGCCCCCGAAAGTCC CTGCA GGACTT-CGGGGGCCGA TCTTTTTGGAACTAT TERM 336 366475 - 366510 + F 100 -21.3 -2.94422 | gap 1, opp_overlap 366469 366475, overlap 366474 366472 TAGCTGAAAGACCAA CGGCCCCCGAAAGTCC CTGCA GGACTT-CGGGGGCCG ATCTTTTTGGAACTA TERM 337 366510 - 366475 - f 100 -22 -3.46285 | gap 1, opp_overlap 366475 366474 366472, overlap 366469 TAGCTGAAAGACCAA CGGCCCCCGAAAGTCCC TGC AGGACTT-CGGGGGCCG ATCTTTTTGGAACTA TERM 338 366635 - 366673 + F 70 -7.2 -4.06419 | overlap 366636 CCCGCGAGACCGGAG GTTAACGCCCGACAGCGC TGT GCGCCCTCGGGCGCAAAA TTGTTTGTGCAAGGC RPE_0327 366722 - 368254 + | signal recognition particle protein TERM 339 368697 - 368667 - g 74 -8.1 -4.16921 | CAACAATCCGGAAAA GGCGGTGCCGCGC AAGGA GCGCAAGGCCGCC GCCGAAGCCGCCGCC rpsP 368389 - 368721 + | 30S ribosomal protein S16 TERM 340 368753 - 368803 + F 77 -13.3 -3.60098 | gap 2 CCTCATGGTTCGAGC CGCACGGCCTCAGCCGTGCGGCTCG GCA TGAGGCGCACGCCTT-GGC-GTGCG TTTGGAATCGAAGCT RPE_0329 368820 - 369350 + | 16S rRNA processing protein RimM RPE_0330 369529 - 370272 + | tRNA (guanine-N1)-methyltransferase rplS 370387 - 370782 + | 50S ribosomal protein L19 TERM 341 370802 - 370833 + F 84 -16 -3.05596 | opp_overlap 370809, overlap 370809 GGCGCCTTCGAGTTC CGAAAAAGCGCGGC GCAA GTCGCGCTTTTTTG TTGCCTGCACCCCTG TERM 342 370826 - 370809 - f 86 -8.3 -4.58395 | opp_overlap 370802 370809 TCGAGTTCCGAAAAA GCGCGGC GCAA GTCGCGC TTTTTTGTTGCCTGC TERM 343 370809 - 370826 + F 100 -10.5 -5.4833 | opp_overlap 370809, overlap 370802 TCGAGTTCCGAAAAA GCGCGGC GCAA GTCGCGC TTTTTTGTTGCCTGC RPE_0332 371086 - 372498 + | isopropylmalate isomerase large subunit TERM 344 372523 - 372554 + T 84 -16.7 -3.02144 | gap 1, opp_overlap 372521 372518 CTCCCATCAACGATT CGTC-ATGCCCGCG CTGGT CGCGGGCATCGACG TCTTGAAAGCGATGC RPE_0333 374469 - 372574 - | sulfate adenylyltransferase, large subunit TERM 345 372629 - 372673 + g 80 -9.2 -4.25104 | gap 1, opp_overlap 372606 TCGCACGCCGCCTCG GCTGACAGCGCCGCGG-TGTC GAGC GACAGCTCCGGCGCTTGCGGC TTTTCATAGGGCGAA RPE_0334 375455 - 374469 - | sulfate adenylyltransferase subunit 2 RPE_0335 376471 - 375452 - | hypothetical protein TERM 346 377045 - 377071 + r 74 -10.1 -3.72893 | gap 1, opp_overlap 377041, overlap 377028 GCATGACCGAACGCT GGCGCGACGCCG TGTC CGGCATC-CGCC TTTGATCGAAGCATG RPE_0336 377504 - 377190 - | hypothetical protein TERM 347 377598 - 377571 - R 81 -4 -5.0133 | overlap 377574 CACCGCGGCAAAAAA CAGCGCGGCC CCAAGCTC AGCCGCGACG CCAGAAACAGTTCAT RPE_0337 377922 - 377587 - | hypothetical protein RPE_0338 378037 - 378483 + | hypothetical protein leuD 378567 - 379172 + | isopropylmalate isomerase small subunit TERM 348 379443 - 379389 - T 77 -12.9 -3.53811 | opp_overlap 379419 379420, overlap 379366 379365 GGGATGCGCCGCAAA GCGGTGCAGA-CCCGGAATCTCGACGC TAT GAGCGGAGATTCCGGGGTTCGC-CCGC CGCTCTCGCTGCGTG TERM 349 379492 - 379524 + T 78 -7 -4.61231 | gap 1, overlap 379493 TCTAGTTAGCGCCCC G-CCACTTCGATCGC ATCC GCGATCGCAATGGTC TTTTTCGCGATCTCG TERM 350 379493 - 379522 + T 79 -10.7 -3.91908 | overlap 379492 CTAGTTAGCGCCCCG CCACTTCGATCGC ATCC GCGATCGCAATGG TCTTTTTCGCGATCT RPE_0340 380360 - 379482 - | Citryl-CoA lyase TERM 351 380223 - 380253 + g 70 -13.3 -3.04144 | gap 1 TGCGACCTGCGTTCG CGCGGTCGC-CTTG GCGT CGGGCGCGACCGCG TCTTCGAGGTCGAGG RPE_0341 380478 - 381128 + | carbonate dehydratase TERM 352 381149 - 381179 + T 100 -16.8 -4.0162 | opp_overlap 381129 381153, overlap 381150 CGTCGGCTCGCCGAA CCGATCGCGACGGC GAT GCCGCCGCGATCGC TTTCTAGTCTAGCCC TERM 353 381150 - 381178 + T 93 -20.3 -3.00651 | opp_overlap 381129 381153, overlap 381149 GTCGGCTCGCCGAAC CGATCGCGACGGC GAT GCCGCCGCGATCG CTTTCTAGTCTAGCC TERM 354 381175 - 381153 - T 83 -17 -2.52464 | opp_overlap 381150 381149, overlap 381129 GGCTCGCCGAACCGA TCGCGACGGC GAT GCCGCCGCGA TCGCTTTCTAGTCTA RPE_0342 381811 - 381188 - | phosphoglyceromutase RPE_0343 382667 - 381846 - | dihydrodipicolinate reductase RPE_0344 383061 - 382759 - | hypothetical protein RPE_0345 383794 - 383087 - | orotidine 5'-phosphate decarboxylase TERM 355 383294 - 383311 + g 78 -14.1 -3.61398 | opp_overlap 383293 383294 GCCATCGCCGACAAT GCCGCGC AGAT GCGCGGC TTCTTCCGGCGAACA TERM 356 383415 - 383382 - G 75 -15.3 -2.79183 | gap 1 CGCAGTTCGACCAGA TCGCGCACGCCGAGCC GGT AGC-CGGCCTGCGCGA GATCGGCCTCGTCGT RPE_0346 384379 - 383801 - | NADPH-dependent FMN reductase RPE_0347 385032 - 384430 - | ribosomal RNA adenine methylase transferase TERM 357 384972 - 384996 + g 79 -2 -5.00616 | opp_overlap 384975, overlap 384974 384975 ATGAGCGGATAAAAC GAACCTCGTC GTCAA GACGGGGCTG TTTTTTCAACGCACG RPE_0348 386305 - 385121 - | chaperone DnaJ RPE_0349 388294 - 386393 - | molecular chaperone DnaK TERM 358 389075 - 389108 + G 73 -12.3 -3.37091 | overlap 389071 389080 TCGACGATTGTTTGC GGTGGCGCTGGTCGC GGCC GCGCTGGGCGCCACC TTCGATTTTGCCGCT TERM 359 389762 - 389711 - g 81 -10.6 -4.07568 | gap 1, overlap 389741 CGCCGCGCCGGAAAA GCCCGACGACCGCGCC-CGGTTCGC GCA ACAGGCCGCGGCGCAGGTGCCGGGC TTGCGCGATGGACGC RPE_0350 389049 - 389999 + | hypothetical protein TERM 360 390031 - 390008 - T 100 -19.6 -3.41878 | opp_overlap 390003 CCGTTGAACCGACAA CGCCGGCGCT GTGA AGCGCCGGCG CGAACTTATTCCAGA RPE_0351 390703 - 390080 - | GrpE protein hrcA 391930 - 390806 - | heat-inducible transcription repressor TERM 361 391669 - 391629 - G 86 -4.6 -5.14563 | gap 2, overlap 391631 GCGTCGACGAAAAAA CGCAGTCCCAGCTCGGTCGG CAG CCGGCCG-GC-GGAAGTGTG GGGGGCGTAGATCAG rph 392033 - 392764 + | ribonuclease PH TERM 362 393027 - 392972 - g 76 -14.7 -3.14881 | opp_overlap 392990 392991 393019 393020, overlap 392990 CAACGCCCGGATCAA GGCCCAGGCCG-CGGCAAACGCCGCGC AACT GC-CGGCCTTTGCCGACGACTCCGGCC TCGTGGTCGACGCGC RPE_0354 392799 - 393434 + | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 363 393644 - 393667 + G 74 -8 -4.1899 | GCACGCCGTCCTTGA TGCAGCCGTC CACC GTCGGCGGCA TTTTGGATGCGATCG TERM 364 393991 - 393964 - g 84 -17 -3.14211 | opp_overlap 393960 ATGTGGGCCGACGAA CTGCGGCTTGCG ATCG CGCAAGCCGCCG AACATCTGTCGCTCT RPE_0355 393421 - 394581 + | coproporphyrinogen III oxidase RPE_0356 395971 - 394727 - | extracellular ligand-binding receptor TERM 365 396118 - 396137 + G 70 -4.2 -4.46212 | gap 1, opp_overlap 396117, overlap 396120 CACACCGCAACCGAT CATCGC-CC CCC GGAGCGAAG TTTTCTGGTCGCCGG TERM 366 396536 - 396560 + G 90 -3.6 -5.4505 | gap 2, overlap 396531 396538 TGTTGACCGCGCTGG CGGT--GTCGGC TTT GCCGACCGATCG TTTTTTCTTCGAAGG TERM 367 396795 - 396757 - g 73 -13.1 -3.21595 | AAGCTGCATGAGGAA GTCCGCCGCGCGCC-GCTC ACC GAGCTGGCG-GCGGAGGCC GAGGCGTTGGAAACC RPE_0357 396079 - 397026 + | hypothetical protein RPE_0358 397013 - 397405 + | hypothetical protein RPE_0359 397447 - 398388 + | glutathione synthetase TERM 368 398564 - 398580 + G 89 -10.8 -4.23892 | TCCAGGTGCAGGTCG CGCCGG GATTG CCGGCG TTTTCCCTGGTTGGC RPE_0360 398491 - 400029 + | Mg chelatase-related protein RPE_0361 400152 - 400622 + | hypothetical protein TERM 369 402920 - 402947 + G 74 -5.4 -4.46212 | AACTCGATGATCGCA CCGCCTGTGGCG AAGC CGGCATGGACGG TTTTCTGGTCAAGCC TERM 370 403015 - 402989 - g 71 -15 -2.5001 | overlap 402988 402978 ACAAGCTCGACGAAG CCCTCGCCGGGC TGG GCGCGGCGCGGG ATATCGCGGCCTAAC RPE_0362 400780 - 403029 + | multi-sensor hybrid histidine kinase TERM 371 403399 - 403387 - g 70 -6.2 -4.18018 | GCTCGCCACCGAAAA GCGC GACGT GCGC CATGCGCAGAAGCTG RPE_0363 403178 - 404128 + | hypothetical protein TERM 372 404479 - 404505 + T 95 -19.5 -3.14132 | CGCTACGCCAGGCGA CCTCTCCCCGC GAAGA GCGGGGAGAGG TTAGTAGAAACGGGC RPE_0364 405487 - 404531 - | pantothenate kinase TERM 373 404566 - 404576 + g 70 -2.4 -4.59773 | overlap 404556 404558 CGGTTTCGACGACGT GGTC GGC GCCC TTTTTCAGGATCAGC TERM 374 405504 - 405524 + r 74 -5.3 -4.61648 | opp_overlap 405507, overlap 405507 405508 CCGTCGTTCCTCGAA TGAGCGCGT GGT ACGCGCGGA TTTATTATTGTTGTT hisE 405919 - 405596 - | phosphoribosyl-ATP pyrophosphatase RPE_0366 406739 - 405972 - | imidazole glycerol phosphate synthase subunit HisF RPE_0367 407486 - 406749 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 375 407387 - 407358 - G 70 -9.9 -3.74077 | gap 1 GTGCAGATACTCAAA GCCCTGGGCGGCGA AGC TCGCCGC-CTGCGC CGCGGGATCGAGATT hisH 408133 - 407483 - | imidazole glycerol phosphate synthase subunit HisH TERM 376 407701 - 407669 - G 73 -12.6 -3.48105 | overlap 407667 GGAATGCACGAAATA GGCGTGGCGCCCGG CAGGC CCGAGCGGCAGGCC GTCGAGCACCGGATG RPE_0369 408627 - 408130 - | hypothetical protein RPE_0370 409247 - 408654 - | imidazoleglycerol-phosphate dehydratase TERM 377 409193 - 409146 - G 83 -14.8 -3.68073 | gap 1, opp_overlap 409164 409191 CATGTGATCGAAGAA GCCGATCCCGGTGGCCACCTGCG ACA CGCCGGTG-CCGTCGAGATCGAC CGCAACCTCGATCGC TERM 378 409755 - 409776 + G 72 -7.1 -4.1964 | overlap 409756 ACGTGATCGGCGGCT TCGCCGGCG CCAC CGCCGACGC TTTTACGCTGTTCGA RPE_0371 409565 - 410137 + | ATP-dependent protease peptidase subunit TERM 379 411566 - 411552 - g 70 -4.2 -4.57073 | GAGTTCGTGCAAAAA CACGTC GGC GACTTG GCGAAGAACGCGGAT hslU 410301 - 411602 + | ATP-dependent protease ATP-binding subunit RPE_0373 412390 - 411788 - | Smr protein/MutS2 TERM 380 412054 - 412079 + g 71 -9.7 -3.85698 | opp_overlap 412018 TCTGGGTCATGCCGT GCAGATCGATG CGGC CGTCGATCGGC TTTCTGCCGCGCGAC RPE_0374 413745 - 412387 - | MltA domain-containing protein TERM 381 413896 - 413871 - R 71 -13.9 -2.61144 | opp_overlap 413877 413884, overlap 413870 413868 CGATCGCGCAAAGAG CTGCGAGCCGG CGCG CCGGCCCGCCG GGGTTATTGACCGCT RPE_0375 414601 - 413900 - | import inner membrane translocase, subunit Tim44 RPE_0376 415022 - 415507 + | preprotein translocase subunit SecB TERM 382 415561 - 415521 - T 81 -16.4 -2.78596 | gap 1, opp_overlap 415526 415530 415531, overlap 415531 GAGCGGCCGACCACA GAAATCAAAA-TGCCGGGC CAAT GCCCGGCAGTTTTGTTTTC AGTTGAGATATTCGT TERM 383 415526 - 415556 + T 100 -14.9 -4.2803 | gap 1, opp_overlap 415521 415531, overlap 415530 415531 GCCGACCACAGAAAT CAAAA-TGCCGGGC CAAT GCCCGGCAGTTTTG TTTTCAGTTGAGATA TERM 384 415530 - 415551 + T 100 -11.5 -5.13343 | opp_overlap 415521 415531, overlap 415526 415531 ACCACAGAAATCAAA ATGCCGGGC CAAT GCCCGGCAG TTTTGTTTTCAGTTG TERM 385 415531 - 415550 + T 85 -15 -3.66379 | opp_overlap 415531 415521, overlap 415530 415526 CCACAGAAATCAAAA TGCCGGGC CAAT GCCCGGCA GTTTTGTTTTCAGTT TERM 386 415550 - 415531 - T 100 -15 -4.65153 | opp_overlap 415530 415526 415531, overlap 415521 CCACAGAAATCAAAA TGCCGGGC CAAT GCCCGGCA GTTTTGTTTTCAGTT RPE_0377 416249 - 415560 - | DNA polymerase III, epsilon subunit coaE 416873 - 416274 - | dephospho-CoA kinase TERM 387 416627 - 416681 + g 70 -10.7 -3.54424 | overlap 416609 GCAGCAGCGGATGCA CGATCTGCTCCAGGCGTTGCATC-GCC TCG GGCTGATGCACCACCTGG-GCGGAGAG TTTGGCGCGGTCGAC RPE_0379 417502 - 416894 - | maf protein TERM 388 417292 - 417316 + g 77 -4.1 -4.72272 | opp_overlap 417310, overlap 417299 GCACCAGCCGGCCGG GCAGCCGCG CCGAGAC CACGGCGGC TTTTTCCTCGGCCAG RPE_0380 418338 - 417499 - | hypothetical protein RPE_0381 418803 - 419237 + | hypothetical protein rho 419539 - 420804 + | transcription termination factor Rho TERM 389 420860 - 420834 - f 76 -13.7 -3.14132 | gap 1, opp_overlap 420834 CGCTGCTGCTAGCAA GGGGCACCGCGC GAAA GC-CGGCGCCCC TTTTTTGCTTCCGCA TERM 390 420834 - 420860 + F 100 -11.5 -5.26875 | gap 1, opp_overlap 420834 CGCTGCTGCTAGCAA GGGGCACCGCGC GAAA GC-CGGCGCCCC TTTTTTGCTTCCGCA TERM 391 420954 - 420997 + F 74 -13 -3.28712 | gap 1 GGGTGCGCTGCAGAT CCGGGGCCCCGG-TGTCTGTC GTC GTCGCTCAACCGGGGTCCCGG TTCTGCGCAGCGGCA TERM 392 422249 - 422269 + G 81 -8.2 -4.56597 | GACCTGGTCGGTGCG CTCGGCGG ATTCG CGGCCGAG TTTTTCGGAGCCGGC TERM 393 422450 - 422472 + G 76 -2.6 -4.96848 | overlap 422446 422451 422452 GTCGATGTGGAGGAC GTCCTGGACG CCC TGTTCAGGGA TTTTTGTATAGGAAA trmE 421043 - 422491 + | tRNA modification GTPase TrmE TERM 394 423292 - 423318 + G 72 -7.2 -4.21194 | gap 1 GAAGCCGTGGAGATG CAGC-CCGGCG ACGATC CGCCGGAGCCG TTTTCGGTGCTGACC TERM 395 424424 - 424399 - g 70 -8.9 -3.89614 | gap 1, opp_overlap 424417 GGCAAGCTGGAGAAA GCCCGTCCG-CG CAC CGTCGGCCAGGC CGGCCGGCTCGACGG RPE_0384 422647 - 424515 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 396 424814 - 424761 - f 74 -10.4 -3.68351 | gap 2, opp_overlap 424780, overlap 424765 TTGCGAGGAGCGAAA GCGA--CGAAGCAATCCAGAATCCCG TGCT CGGCGCACTGGATTGCTTCGCATCGC TCGCAATGACGGGGA TERM 397 424808 - 424765 - f 74 -14.6 -2.66748 | opp_overlap 424780, overlap 424761 GAGGAGCGAAAGCGA CGAAGCAATCCAGAATCCCG TGCT CGGCGCACTGGATTGCTTCG CATCGCTCGCAATGA RPE_0385 424979 - 425674 + | methyltransferase GidB RPE_0386 425671 - 426522 + | cobyrinic acid a,c-diamide synthase RPE_0387 426771 - 427673 + | parB-like partition proteins holA 428984 - 427956 - | DNA polymerase III subunit delta RPE_0389 429537 - 428986 - | hypothetical protein leuS 432190 - 429524 - | leucyl-tRNA synthetase TERM 398 429766 - 429724 - G 74 -7.5 -4.25104 | gap 1, overlap 429763 TGTCTTCGACCAAAA GCGC-GGGCTCGACCGCCGG CCAG CCGGCTTCCGAGACCAGCCC GGCCTGACCGAGCAC TERM 399 431102 - 431064 - G 100 -14.5 -4.46212 | gap 1, opp_overlap 431066, overlap 431066 431095 TCGGTGATGACAAAA CTCGCCGG-GTCCTGCCC CTCG GGGCAGACCACCGGCGTG TTGCCGAGATCGTAT TERM 400 431066 - 431100 + g 70 -13.5 -3.0263 | gap 1, opp_overlap 431066 431064 431095 GGTGATGACAAAACT CGCCGG-GTCCTGCCC CTCG GGGCAGACCACCGGCG TGTTGCCGAGATCGT TERM 401 431100 - 431066 - G 74 -15.7 -2.56122 | gap 1, opp_overlap 431066, overlap 431064 431095 GGTGATGACAAAACT CGCCGG-GTCCTGCCC CTCG GGGCAGACCACCGGCG TGTTGCCGAGATCGT TERM 402 431507 - 431543 + g 73 -12.9 -3.28712 | GACCAGCATGCCTTC GGAGCGGCCGATCCAGT TGC GCTGCATCAGCCGCACC TTGTCGGGCCAGCGG TERM 403 431831 - 431857 + g 89 -10.8 -4.24342 | opp_overlap 431833 TTCGCGCGCCCAATC CAGCGACAGACC CAT GGTCTGCAGCTG TTTCTTCATCGCCGC RPE_0391 434066 - 432387 - | diguanylate cyclase TERM 404 433026 - 433079 + g 72 -8.3 -4.1552 | gap 5, opp_overlap 433026 CGCCAGCGGCAGGAA TTCGGCCGGCAGGCG-CTTG-C-GCCCG ACC CGGGCCGACCAGTCGCC--CTGGCCGAA TTTCTTCGCGACCTC RPE_0392 434273 - 434938 + | hypothetical protein RPE_0393 435572 - 434964 - | hypothetical protein TERM 405 435123 - 435084 - G 78 -6.2 -4.66833 | opp_overlap 435089 435100 435105, overlap 435086 CGCCAAGTGCAAAAA CACCGCGCTGCCGCGG CCGGCCAC CCGCGGCCGGGTGTTG TGGTCGATCTCGATG TERM 406 435099 - 435086 - G 73 -9.5 -3.94933 | opp_overlap 435089, overlap 435084 CCAAGTGCAAAAACA CCGCG CTGC CGCGG CCGGCCACCCGCGGC RPE_0394 435709 - 436392 + | two component transcriptional regulator RPE_0395 436459 - 436905 + | cyclic nucleotide-binding protein RPE_0396 437905 - 437093 - | exodeoxyribonuclease III Xth RPE_0397 438944 - 438096 - | outer membrane lipoprotein carrier protein LolA RPE_0398 441556 - 439094 - | cell divisionFtsK/SpoIIIE RPE_0399 442791 - 441553 - | aminotransferase, class I and II RPE_0400 443294 - 442950 - | hypothetical protein RPE_0401 443652 - 443284 - | DNA polymerase beta subunit TERM 407 443549 - 443504 - G 100 -16.7 -4.18488 | ACCGAGCCGAACAAA GCCGCGCGTCGCACGCCCCGC GCCC GCAGGGCATGCTCCGAGCGAC GCAAGGTGGCGAGGG TERM 408 443662 - 443685 + r 83 -15.2 -3.16683 | opp_overlap 443662 ACTCACAAAAGAAAA GGGCCCCAGC TTGC GCGGGGGCCC TTGGTCGGATCGGGT TERM 409 443685 - 443662 - R 100 -15.2 -5.19275 | opp_overlap 443662 ACTCACAAAAGAAAA GGGCCCCAGC TTGC GCGGGGGCCC TTGGTCGGATCGGGT RPE_0402 445208 - 443766 - | ammonium transporter RPE_0403 445584 - 445246 - | nitrogen regulatory protein P-II TERM 410 445947 - 445918 - R 75 -3.4 -4.93968 | gap 1, overlap 445920 445922 AGGCATAATCAAAAA GAGAGCGGCCGGG ACGAG CCCGGCCAC-CAA GCGTGACTTAATTTT TERM 411 445945 - 445920 - R 78 -10.4 -4.08682 | gap 1, overlap 445918 445922 GCATAATCAAAAAGA GAGCGGCCGGG ACGAG CCCGGCCAC-C AAGCGTGACTTAATT TERM 412 445944 - 445922 - R 81 -14.1 -3.62085 | overlap 445920 445918 ATAATCAAAAAGAGA GCGGCCGGG ACGAG CCCGGCCAC CAAGCGTGACTTAAT RPE_0404 447292 - 445988 - | ammonium transporter TERM 413 446250 - 446209 - G 85 -12.9 -4.08767 | CGGAGGTGGCGAAAA TCCCCGCCATCAGCGTGCC GGCG AGCCCGCCGATGCCGTGGA CCCCGAACACGTCGA RPE_0405 447699 - 447361 - | nitrogen regulatory protein P-II RPE_0406 448753 - 447872 - | acyl-CoA thioesterase II TERM 414 449729 - 449741 + G 72 -5.5 -4.36914 | TTCCGCTCGGCTATT TCGTG GCG CGCGA TTTTGTCGCGCCGCG RPE_0407 448906 - 450126 + | 2-octaprenyl-6-methoxyphenyl hydroxylase RPE_0408 450390 - 450190 - | hypothetical protein RPE_0409 451153 - 450479 - | peptidase S16, lon domain-containing protein RPE_0410 452094 - 451174 - | thioredoxin domain-containing protein TERM 415 451337 - 451351 + g 72 -4.9 -4.56597 | GTGGTGGCCTCGTCG CGCTG GCCGG CGGCG TTTTTGGCCAGAGCG TERM 416 451691 - 451732 + g 70 -11.4 -3.35798 | gap 1, overlap 451705 TCGGCGAGCAGCTCG GC-GGCGGTCGGGCCGCCG TCACC CGGCAGGCCGGCGGCCAGC TTGTCGATGAAGGCT TERM 417 452610 - 452659 + r 74 -14.3 -2.56596 | opp_overlap 452598 452617 452618 452626, overlap 452626 CGATCGCCGACGGGC GCCCAAACGCAAAAAAGCCCGCG AGAT CGCGGGCTTTTTTCTGTCGTGGC TCAGTTCCTAGCGGA TERM 418 452652 - 452617 - R 83 -14.8 -3.53444 | opp_overlap 452610 452626, overlap 452618 452626 CGACGGGCGCCCAAA CGCAAAAAAGCCCGCG AGAT CGCGGGCTTTTTTCTG TCGTGGCTCAGTTCC TERM 419 452650 - 452618 - R 78 -15.8 -2.71924 | gap 1, opp_overlap 452610 452626, overlap 452617 452626 GACGGGCGCCCAAAC GCAAAAAAGCCCGCG AGAT CGCGGGCTTTTTT-C TGTCGTGGCTCAGTT TERM 420 452626 - 452643 + r 100 -14.1 -5.39721 | opp_overlap 452626 452618 452617, overlap 452610 CCCAAACGCAAAAAA GCCCGCG AGAT CGCGGGC TTTTTTCTGTCGTGG TERM 421 452643 - 452626 - R 100 -14.1 -5.22039 | opp_overlap 452610 452626, overlap 452618 452617 CCCAAACGCAAAAAA GCCCGCG AGAT CGCGGGC TTTTTTCTGTCGTGG RPE_0411 453521 - 452748 - | histidine kinase TERM 422 454324 - 454364 + G 78 -15.3 -3.1372 | overlap 454323 CGTCAAGCCGAAGGC GCCGCGCGAGACCGATGTC CGC GCCATCGAACTGGCGCGGC TGTTGATCCACCCTG RPE_0412 454055 - 455032 + | AppA/PpaA family photosynthesis gene regulator TERM 423 455755 - 455713 - g 72 -7 -4.19238 | overlap 455716 CGTTCAAGCCCAAAA CCA-CCCGCGGCAATGAGCT GTTCG AGC-CGTTGCAGCGGGACGG CGTGGCGCCGGTCAA TERM 424 455861 - 455839 - g 70 -10.4 -3.73402 | overlap 455852 455853 AGACGCTGGAGCAAA CGCTGGCGGC AAA GCCGGCTGCG AGCCCCAACGCCGAT RPE_0413 455406 - 456497 + | hypothetical protein TERM 425 456532 - 456554 + T 100 -9.1 -4.90778 | opp_overlap 456532, overlap 456502 TGCTGATCTGATCAA CGGACAGAC CCCGA GCCTGTCCG TTTTCTTTGAATCGA TERM 426 456554 - 456532 - T 70 -12 -3.16564 | opp_overlap 456502 456532 TGCTGATCTGATCAA CGGACAGACC CCG AGCCTGTCCG TTTTCTTTGAATCGA RPE_0414 457941 - 456688 - | molecular chaperone, HSP70 class TERM 427 459431 - 459457 + G 85 -10 -4.16842 | opp_overlap 459431, overlap 459432 TGAAAATGTCCAAGA TCGTGGTGTCGG AAG CCGGCGCCTCGG TTTATTCCGCCTCCG TERM 428 460088 - 460065 - g 78 -10.2 -4.11216 | gap 1, overlap 460066 GCGCGAGTTGGAAAA GCCCGGCCGCG ATC CGCGCCCGG-C GTTCAAGGCTGCGGA RPE_0415 458182 - 460536 + | RNA-binding S1 domain-containing protein TERM 429 461087 - 461118 + G 85 -13.8 -4.0641 | gap 1, overlap 461090 CTACCGGATGATGGT CG-AGGCGCTCGG CGTCGAT CCGAGCGCCTGCG TTTATCTCGATGACA RPE_0416 460617 - 461249 + | HAD family phosphatase RPE_0417 461484 - 462464 + | alpha/beta hydrolase fold RPE_0418 462591 - 463742 + | hypothetical protein RPE_0419 463739 - 464833 + | hypothetical protein RPE_0420 464826 - 466187 + | hypothetical protein TERM 430 466259 - 466246 - f 100 -9.5 -4.8543 | opp_overlap 466255, overlap 466248 CAAGTCCGACAAAAA GCCGC AACC GCGGC GCGCCAATGCTGCTA RPE_0421 466266 - 466619 + | hypothetical protein RPE_0422 468086 - 466788 - | rubisco-like protein Rlp2 TERM 431 467009 - 467036 + g 79 -13.4 -3.72695 | gap 1, opp_overlap 466985 GCGTCAGCGCATTGT CGCTGCC-GCCGG GCA CCGGCAGGCAGGG TTTGATGGGCCCCAT RPE_0423 468531 - 468091 - | hypothetical protein TERM 432 468676 - 468692 + H 73 -10.8 -3.55444 | opp_overlap 468675 468674, overlap 468684 GCTAGGCAGGAAAGC GCGGCG GATTG CGCCGC TTTCAGAGCTGAAAG RPE_0424 468715 - 469110 + | SecC-like protein TERM 433 470378 - 470320 - g 70 -10.9 -3.53811 | overlap 470321 TCGACGCTGTTGAAA CTGATCGCCGGCGCC-ACCACGCCCGACC AGG GCACGGTCGCGGTCGGCGGCAGCG-TCAA GATGGGCTATTTCGC RPE_0425 469216 - 470838 + | ABC transporter related RPE_0426 470961 - 471575 + | 3'-5' exonuclease RPE_0427 471793 - 472491 + | hypothetical protein TERM 434 472741 - 472771 + G 75 -9 -4.13767 | opp_overlap 472746, overlap 472743 GGTGGTGCAGGGCGA TACCACCATGACCT CCA AGGTGCTGGTGGTG TTTTACGATCAGGAC RPE_0428 472481 - 473170 + | OstA-like protein TERM 435 473193 - 473168 - f 79 -8.9 -4.27316 | overlap 473169 GGCGGCAAGGCAAAA TGAGGATGGCG GGCT CGCCAGCCTCG CAATTGCCGTCTCAG TERM 436 473192 - 473169 - f 70 -12.4 -3.16068 | overlap 473168 GCGGCAAGGCAAAAT GAGGATGGCG GGCT CGCCAGCCTC GCAATTGCCGTCTCA RPE_0429 473357 - 474301 + | ABC transporter related TERM 437 474750 - 474719 - g 73 -14.4 -3.17212 | CGAGGAGTGGATGAA GCCCGAGCTCGGCA GTCG CGCCGAGATCGAGC AGACCTTCGACACCG TERM 438 475238 - 475224 - g 72 -11.4 -3.53224 | GATCTGTTGGCGAAA CGCGAC ATC GTCGCG CTGCGCAAGATCTGC TERM 439 475295 - 475269 - g 76 -15.2 -3.21099 | overlap 475249 475285 GGCGTCGACGACGAA GACCTCGCCGAC ATG ATCGGCGAGATC CGCCACCTCGATCCC RPE_0430 474408 - 476051 + | RNA polymerase factor sigma-54 RPE_0431 476108 - 476698 + | sigma 54 modulation protein/ribosomal protein S30EA RPE_0432 476937 - 477398 + | PTS IIA-like nitrogen-regulatory protein PtsN TERM 440 477495 - 477464 - T 75 -12.3 -3.62032 | gap 1, overlap 477470 AGATCAATTCCCAAA CGACAATGGCCGGG ACAAG CCCGGCCAT-GACG ACGAGATTGAATACG TERM 441 477490 - 477470 - T 81 -14 -3.60419 | overlap 477464 ATTCCCAAACGACAA TGGCCGGG ACAAG CCCGGCCA TGACGACGAGATTGA RPE_0433 479057 - 477522 - | hypothetical protein TERM 442 478104 - 478133 + g 80 -15 -3.44146 | GATCTCCGCCTGCAT CGCGTCGCGCTG GCCTTG CAGTGCGGCGCG TTCCTTGTCGCGAAC TERM 443 478216 - 478256 + g 80 -14.5 -3.4489 | TTGAGATCGAGTCCC GCGATCGCCGCCTCGCGCG CGC CGCGCTGGGCTTCGAACGC TTCCTTCTGCCGCTT RPE_0434 479776 - 479513 - | hypothetical protein TERM 444 479723 - 479750 + g 74 -7.6 -4.26079 | overlap 479743 GCCTTCGCCCAGGCT CGCCAGCCTCTC GGTG GAGACGTCGGCG TTTTCGATGATTTCG RPE_0435 480254 - 479829 - | heat shock protein Hsp20 TERM 445 480406 - 480454 + r 70 -7.4 -4.07568 | gap 2, opp_overlap 480420 CCCGCACTTTGCTGC GATGCGTC-AATCGAT-CCGGCGG CGC CCGCCGGCGTCGAACAGATGCAGC TTTTGGCGCGGCGCG RPE_0436 481497 - 480412 - | glycerol-3-phosphate transporter ATP-binding subunit RPE_0437 482473 - 481625 - | binding-protein-dependent transport systems inner membrane component TERM 446 482549 - 482494 - R 100 -26.3 -3.28712 | gap 2 GCGCCTTTCCGACAA GCG-GCGCACCTG-CACCCTCTCCCCG CTTG CGGGGAGAGGGTGGCCGACGCGCGCGC AGCGCGTGTCAGCCG RPE_0438 483596 - 482715 - | binding-protein-dependent transport systems inner membrane component RPE_0439 483993 - 483598 - | hypothetical protein RPE_0440 485453 - 484137 - | extracellular solute-binding protein RPE_0441 486830 - 485625 - | L-carnitine dehydratase/bile acid-inducible protein F RPE_0442 487112 - 486837 - | excinuclease ABC subunit C TERM 447 487588 - 487566 - R 70 -9.9 -3.59979 | opp_overlap 487579 487581 487582, overlap 487579 CCTCGTCACCCGAAA CGTCACCAA TAATG TCGGTGACG TCCTCGTCGCCCTCT RPE_0443 487953 - 487543 - | hypothetical protein TERM 448 488155 - 488139 - g 75 -9.3 -4.11484 | TTCAAGCCCGCAAAA GCCCGGC GCT GCAGGGC CGCGTCCGCGTGCCC RPE_0444 488096 - 489433 + | 3-phosphoshikimate 1-carboxyvinyltransferase RPE_0445 490109 - 489438 - | hypothetical protein RPE_0446 490300 - 490935 + | cytidylate kinase RPE_0447 490971 - 491276 + | hypothetical protein RPE_0448 491257 - 491754 + | hypothetical protein TERM 449 491919 - 491929 + F 83 -5.4 -5.08011 | GCCCGCTCCACGCCG TCGA CCA TCGA TTTTTTGGGGCTTTT rpsA 492122 - 493819 + | 30S ribosomal protein S1 TERM 450 493870 - 493849 - f 95 -18.7 -3.53012 | opp_overlap 493849 CGTCCGTTTGCGAAA GGCCCCGGC GCTC GCCGGGGCC TTTTTTTCGTCCCGG TERM 451 493849 - 493870 + F 100 -18.7 -5.52384 | opp_overlap 493849 CGTCCGTTTGCGAAA GGCCCCGGC GCTC GCCGGGGCC TTTTTTTCGTCCCGG RPE_0450 494025 - 494999 + | signal peptide peptidase SppA, 36K type TERM 452 495282 - 495308 + G 91 -12.3 -4.18018 | TTGGCGCGGGGCGAC CGCGTCGAACT GCGCG GGTTCGGCGCG TTTTCGGTCAAGCAC ihfB 495159 - 495467 + | integration host factor subunit beta TERM 453 495473 - 495457 - f 91 -15.1 -3.86822 | opp_overlap 495456 495455 GAATTTCCGCAGAAA CCGGCGC GTA GCGCCGG CCTTTGCCGCAAGGC RPE_0452 495499 - 495900 + | hypothetical protein RPE_0453 495951 - 496607 + | N-(5'-phosphoribosyl)anthranilate isomerase RPE_0454 496607 - 497821 + | tryptophan synthase subunit beta trpA 497821 - 498657 + | tryptophan synthase subunit alpha RPE_0456 498828 - 499805 + | acetyl-CoA carboxylase subunit beta TERM 454 500487 - 500435 - g 71 -12.1 -3.28416 | gap 3, opp_overlap 500456 500459 GAGCAGCCAGATGAA GCGATG-GCGGCG-ATCG-AGCGCCA GGCG CGGCGCTGCCATGCGCCGCTCAGCGC CGCCGGCCAGCACTG TERM 455 500625 - 500640 + G 75 -4.6 -4.65895 | overlap 500611 TTGCGATTGCGACGC TGCGCG CGAT CGAGCA TTTTTCCATCGACAA TERM 456 500816 - 500779 - g 71 -12.5 -3.29144 | overlap 500756 500780 CGACGGCGGCCACAA TGCCGATGGCGGCCGCG TTGC CGCCGCGGCCCTCGGCG ATCTCGAAGAGCGGG TERM 457 500815 - 500780 - g 74 -16 -2.57344 | overlap 500756 500779 GACGGCGGCCACAAT GCCGATGGCGGCCGCG TTGC CGCCGCGGCCCTCGGC GATCTCGAAGAGCGG RPE_0457 499802 - 501145 + | FolC bifunctional protein RPE_0458 501174 - 501920 + | methyltransferase type 11 TERM 458 501927 - 501907 - T 91 -15.4 -3.92324 | opp_overlap 501898 CCCCTGAACAGCAAA CGGCCGGC GATTA GCCGGCCG TCGCAGAGTAATATG RPE_0459 502270 - 501950 - | thioredoxin RPE_0460 505863 - 502366 - | UvrD/REP helicase TERM 459 502655 - 502637 - G 77 -6.7 -4.50976 | gap 1, overlap 502641 CCGGAGACCAGAAAA GGCACGCC GCCC GGC-TGCC GCAGCCGTCCGATGA TERM 460 502763 - 502778 + g 77 -5.4 -4.67755 | gap 1 GCCAACGCGGTGCGA TC-GGCC TCG GGCCAGA TTTTTGGATCGGTGT TERM 461 502820 - 502841 + g 78 -13.7 -3.53091 | opp_overlap 502807 AAGCCGGCCGCCGCA TCGCGCCGG CGCG TCGGCGCGA TTTCGGGCAGCGACT TERM 462 503747 - 503784 + g 72 -8.6 -4.10331 | gap 2, opp_overlap 503741 503742 TGCGACAAAGCGAGT TTCGCGCAGTCGTTCAGC CTCT GCTGGGCGA-TGC-CGAA TTTGTCGTTGGTTGC TERM 463 503874 - 503888 + g 72 -8.5 -4.07568 | opp_overlap 503885 GATCGTCGTCGTCGA GCCCG AACAA CGGGC TTTTCAGCGCCACCG TERM 464 505119 - 505080 - G 70 -4 -4.56597 | gap 1 CGCCGGCTTCAAAAA CCTCCGCTGCCGC-CTCCC ATT GCGCGCGCGGCAGATGCGG GCCGTCGACGATGTC TERM 465 505355 - 505305 - G 71 -14.6 -2.52464 | gap 1, opp_overlap 505340 CCGCCGCCGAAGTCA TCGCCGTCGTCAGCGCCCGGCCG ATCTCG CTGTCCGGCGCTGACG-CGGCGC GCAGCAGCACGCCGA RPE_0461 509009 - 505860 - | hypothetical protein TERM 466 508617 - 508634 + g 76 -8.3 -4.23892 | GACCACCAGCGGCGC CGCGGCG GGAT CGCCGGG TTTTAGCTGCTTGGC RPE_0462 510031 - 509309 - | nucleotidyl transferase TERM 467 510188 - 510209 + r 95 -10.1 -4.52415 | gap 1, overlap 510188 CGCTGGCCGGCTGGT CGCGGCCGCT GGC GGCGG-CGCG TTTCTTCTTGTCGCT RPE_0463 510491 - 510168 - | hypothetical protein RPE_0464 512088 - 510565 - | hypothetical protein RPE_0465 514616 - 512085 - | PAS/PAC sensor signal transduction histidine kinase TERM 468 512325 - 512336 + g 75 -4.4 -4.65895 | CTTGTCGATGACGGT GAAG ACGA CTTC TTTTTCGCTGCGCGC TERM 469 513739 - 513757 + g 74 -16 -2.62515 | TCGGCGAGCGCACGG GCGACCGC GGC GCGGTCGC TGCTGTCCAACAATT TERM 470 513864 - 513848 - G 71 -15.1 -2.64155 | overlap 513845 513844 CGTTGGCGAAAGTGA GCGCGCC GTC GGCGCGC CTGGTCCAGATCGGC TERM 471 514984 - 514957 - R 80 -14.8 -3.17075 | gap 1 GCCGGTGGAACCGAA GCCGCCG-GCGCC GCG GCCGCTCGGCGGC AGCGCCTCGACGCTC RPE_0466 515388 - 514936 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut RPE_0467 516821 - 515385 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 472 516290 - 516325 + g 72 -14 -3.04263 | gap 1, opp_overlap 516290 TGGTGGCGAGCAAAA TGGCG-CTGGCGAGGTC GTC GGCCTGGCCGGTCGCCA TCTTCGCCATCAAAT TERM 473 516325 - 516290 - G 80 -9.6 -4.25104 | gap 1, opp_overlap 516290 TGGTGGCGAGCAAAA TGGCG-CTGGCGAGGTC GTC GGCCTGGCCGGTCGCCA TCTTCGCCATCAAAT TERM 474 517602 - 517620 + G 70 -8.8 -4.00868 | overlap 517603 GACCGCGTGGCATGA CGCTCGAC TGC GTCGAGCC TTTCGTTATCAATAC RPE_0468 517111 - 517908 + | hypothetical protein TERM 475 517949 - 517916 - T 100 -13.2 -4.4078 | gap 1 TTCCTTGAACGAAAA CGGGGGCCTACGGGC TCAGC ACCCGTA-ACCCCCG GCGATCGCAAGCGAT TERM 476 518041 - 518019 - T 100 -12.2 -4.7254 | opp_overlap 518019 ATTCTGCATGAAAAA TCAATAGGTT ACT AACCTATTGA TTTTTGACTCCTTTT TERM 477 518019 - 518041 + T 100 -12.2 -4.7329 | opp_overlap 518019 ATTCTGCATGAAAAA TCAATAGGTT ACT AACCTATTGA TTTTTGACTCCTTTT RPE_0469 519706 - 518129 - | 2-polyprenylphenol 6-hydroxylase ubiE 520578 - 519703 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 478 521113 - 521103 - g 90 -3.2 -5.40072 | opp_overlap 521105 GCGCCGGCAAAAAAA CCTC GCT GAAG GCGGCGCTGTTGGAC RPE_0471 520601 - 521482 + | formamidopyrimidine-DNA glycosylase RPE_0472 521740 - 521522 - | virulence-associated protein VapB-like protein RPE_0473 521889 - 523403 + | malonyl-CoA synthase TERM 479 523806 - 523784 - g 70 -11.2 -3.5393 | ATCACCGCGCGGAAA GCGCCGGCCT GCG AGGCCACCGC GCAGGAACTCACGGC RPE_0474 523652 - 524458 + | short-chain dehydrogenase/reductase SDR TERM 480 524514 - 524481 - f 75 -12.4 -3.62096 | gap 1 TGGCACCACTCCAAA CGCGTGATGCCCGCG CCTGT CGCGGGCGTC-CACG TCCTGAAGCCGTGCA TERM 481 524572 - 524540 - f 70 -9.9 -3.55084 | gap 1, overlap 524538 GTGCAAGATCAAAGA CGTGGATGGCCGGG ACGGAG CCCGGCCATG-ACG AGTTGACAGGGATGA RPE_0475 524707 - 525624 + | anaerobic benzoate catabolism transcriptional regulator RPE_0476 525935 - 526522 + | beta-Ig-H3/fasciclin TERM 482 526589 - 526618 + F 100 -17.9 -4.00038 | overlap 526592 TCCCCATCGGGATGC GGAGCGAGCCGGT GCCC GCCGGCTCGCTTC TTTGTGATCATGATC TERM 483 526592 - 526615 + F 100 -16 -4.12254 | overlap 526589 CCATCGGGATGCGGA GCGAGCCGGT GCCC GCCGGCTCGC TTCTTTGTGATCATG RPE_0477 526735 - 527364 + | hypothetical protein RPE_0478 527375 - 528154 + | twin-arginine translocation pathway signal TERM 484 528273 - 528317 + T 95 -16.5 -3.85698 | opp_overlap 528264 528277 528298 528307, overlap 528239 528238 CAGCAACGCTGCGAG CGAACCCGGAATCTCGATGTT ATA AGCCCAGAGATTCCGGGTTCG TTTGTCAGCGGACGA TERM 485 528365 - 528307 - T 100 -27.7 -2.92653 | gap 2, opp_overlap 528273, overlap 528277 528298 TTATAAGCCCAGAGA TTCCGGGTTCGTTTGTCAGCGGACGACGC CTT GCGCCGCCCGCTGACAAACGC-CCCGGA- ATGACATGGGGAGAG RPE_0479 529692 - 528403 - | major facilitator transporter TERM 486 528877 - 528832 - G 77 -14 -3.47941 | gap 2, overlap 528823 GATCAAGCACCAGAA CGCGCTCTGCGCCGCGGCGCCG CCGC CGGCGTCGCGG-ACATAG-GCG ATCATGAAGGTCATG RPE_0480 529849 - 530961 + | 3-isopropylmalate dehydrogenase TERM 487 530978 - 531033 + F 85 -14.6 -3.57144 | gap 1, opp_overlap 530965 530978 530989, overlap 530979 531029 TACCGACAGAATGTA GGGTGGGCAAAGCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGCG-TGCCCACCG TTTCGCGGTACGAAA TERM 488 531033 - 530978 - f 74 -14.6 -2.63555 | gap 1, opp_overlap 530978 530979 531029, overlap 530965 530989 TACCGACAGAATGTA GGGTGGGCAAAGCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGCG-TGCCCACCG TTTCGCGGTACGAAA TERM 489 530979 - 531032 + F 86 -18.1 -2.74144 | gap 1, opp_overlap 530978 530989, overlap 530978 531029 ACCGACAGAATGTAG GGTGGGCAAAGCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGCG-TGCCCACC GTTTCGCGGTACGAA TERM 490 531023 - 530989 - f 75 -12 -3.53811 | opp_overlap 530979 530978, overlap 530978 TGTAGGGTGGGCAAA GCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGC GTGCCCACCGTTTCG TERM 491 531079 - 531092 + F 76 -9.5 -4.08216 | GTAGTGTGTGGGCAA GGCGC CAGG GCGCC TTTTGCCCACCCTAC TERM 492 531125 - 531144 + F 88 -15 -3.71917 | opp_overlap 531125 AGCGGCCTACAAAAA TGCCCGGC GCGA GCCGGGCA TTTGGCGTTTCGGCT TERM 493 531144 - 531125 - f 100 -15 -4.83169 | opp_overlap 531125 AGCGGCCTACAAAAA TGCCCGGC GCGA GCCGGGCA TTTGGCGTTTCGGCT TERM 494 531211 - 531197 - f 73 -8.5 -4.08216 | GTAGGGTGGGCAAAA GGCGC CCTTC GCGCC GTGCCCACCACGCGC RPE_0481 531234 - 531776 + | hypothetical protein TERM 495 531794 - 531849 + T 85 -14.6 -3.57144 | gap 1, opp_overlap 531805, overlap 531795 531845 ATCGTCGCAGTCGTA GGGTGGGCAAAGCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGCG-TGCCCACCG TTTCGCGGTACGAAA TERM 496 531795 - 531848 + T 86 -18.1 -2.74144 | gap 1, opp_overlap 531805, overlap 531794 531845 TCGTCGCAGTCGTAG GGTGGGCAAAGCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGCG-TGCCCACC GTTTCGCGGTACGAA TERM 497 531839 - 531805 - T 75 -12 -3.53811 | opp_overlap 531795 531794 CGTAGGGTGGGCAAA GCCGCCGTCGTCGCTC GAA GAGCGAGGGCGGAAGC GTGCCCACCGTTTCG TERM 498 531895 - 531908 + T 76 -9.5 -4.08216 | GTAGTGTGTGGGCAC GGCGC CAGG GCGCC TTTTGCCCACCCTAC TERM 499 531941 - 531960 + T 88 -15 -3.71917 | opp_overlap 531941 AGCGGCCTACAAAAA TGCCCGGC GCGA GCCGGGCA TTTGGCGTTTCGGCT TERM 500 531960 - 531941 - T 100 -15 -4.83169 | opp_overlap 531941 AGCGGCCTACAAAAA TGCCCGGC GCGA GCCGGGCA TTTGGCGTTTCGGCT RPE_0482 532359 - 531988 - | hypothetical protein RPE_0483 532867 - 532556 - | hypothetical protein RPE_0484 532996 - 534030 + | aspartate-semialdehyde dehydrogenase RPE_0485 534304 - 534873 + | hypothetical protein RPE_0486 535786 - 534893 - | methylated-DNA--protein-cysteine methyltransferase RPE_0487 536402 - 535839 - | hypothetical protein TERM 501 535964 - 535930 - G 73 -6.3 -4.36914 | opp_overlap 535937 TTCGGCGCCAGAAAA CTGGCGATCGGCAGC CGGTT GTTCCCGGTCACCAG ACAGAGATTCTGCAC TERM 502 536187 - 536175 - G 75 -4.7 -4.59773 | overlap 536176 GTCGAGCCCGAAAAA CCCCG TCA CGGGC CAGGCGCCCATCCAC RPE_0488 536418 - 537212 + | endonuclease III RPE_0489 538180 - 537425 - | CysZ-like protein RPE_0490 539285 - 538257 - | hypothetical protein TERM 503 538946 - 538905 - G 72 -13.7 -3.06696 | gap 1, opp_overlap 538913 GTGGCTGGGAAGATA GCGCGACAGCGGCGAGGACG AGA CGCCCTCGCCGATATTG-GC CTCGATCAGCACATG TERM 504 538913 - 538939 + g 70 -13.6 -3.06492 | opp_overlap 538905 GAAGATAGCGCGACA GCGGCGAGGACG AGA CGCCCTCGCCGA TATTGGCCTCGATCA TERM 505 539763 - 539747 - g 75 -5 -4.65895 | overlap 539748 539749 GCGCCGAGCCAAAAA CTGCGG ATCGG CCGCCG CAACGCCCGGCCCGG TERM 506 540693 - 540678 - g 72 -11.8 -3.53343 | AAGGCGCCTGGGAAA GCGGCG AACG CGCCGC CGACGCCGCGCTGAA RPE_0491 539339 - 540820 + | twin-arginine translocation pathway signal RPE_0492 541140 - 540823 - | hypothetical protein pheT 543637 - 541226 - | phenylalanyl-tRNA synthetase subunit beta TERM 507 542121 - 542159 + g 77 -13.9 -3.35996 | gap 2 ACCGCCTCGACCATG CCGCGCGCCGCCAGCGC GCGCTTG GCGC-GGCGG-GTGCGG TTCTGCATCAGGGTC TERM 508 542246 - 542210 - G 70 -10.8 -3.53012 | opp_overlap 542196 CTCGCCGCGCGGAAA CGGCGTCATCGGCACC TGGTC GACGCCGATGATGCGG ACGATTTCCTCGACG RPE_0494 544110 - 543634 - | hypothetical protein TERM 509 544033 - 544046 + g 70 -2.3 -4.62069 | opp_overlap 544033, overlap 544017 AGCGCGACGCATGAA GGCTT CGCG GGGCC TTTTTCCGGTGCGCC RPE_0495 544403 - 544107 - | hypothetical protein pheS 545517 - 544420 - | phenylalanyl-tRNA synthetase subunit alpha TERM 510 545654 - 545616 - R 70 -10.4 -3.61902 | gap 2, overlap 545618 GTGGATCAGACAGAA GACGT-G-GATGGCCGGG ACGAG CCCGGCCATGACGACGTC GATGATGGCACATTC rplT 546067 - 545708 - | 50S ribosomal protein L20 TERM 511 545890 - 545906 + g 75 -11.5 -3.68222 | TGCGCTGGATCCACA GCGCGCG GAA CGTGCGC TTCTTGCGCTTGCGA rpmI 546353 - 546153 - | 50S ribosomal protein L35 TERM 512 546999 - 546941 - g 73 -14.3 -3.21218 | gap 1, opp_overlap 546981 AGCGGTGACGATCAA GGTCGGCGCCTCGGTGGCCAGCG-GCCG CGGC CGGCTCGCCGGCAACTCCGGCGCCGGGC GCTGGAGCGGCGTCA RPE_0499 546624 - 547061 + | hypothetical protein TERM 513 547123 - 547095 - T 100 -20.3 -5.26119 | GCTGCAAAAACAAAA CGGCCCGCCAGGC GAT ACCTGACGGGCCG AAATCAAACGCTGTG infC 547604 - 547149 - | translation initiation factor IF-3 TERM 514 548114 - 548127 + G 72 -5.2 -4.38712 | AACATCCAATTGTCC GCCG CACTTC CGGC TTTTGTCGAGGTCGG RPE_0501 548087 - 548884 + | hypothetical protein RPE_0502 550174 - 549056 - | hypothetical protein TERM 515 550077 - 550058 - G 77 -7 -4.56597 | overlap 550059 550060 GCCGTCGGCCAAAAA CTGCGCCA GCCG CGGCGCCG CCTGCGCGATCGACT RPE_0503 551171 - 550479 - | glutathione S-transferase TERM 516 551585 - 551621 + G 77 -7.2 -4.56597 | gap 1 CATGTTCTCCGACCC CGCGGCGCAGCGCTTCG TGAT CGGGGTGCTG-GTGGCG TTTTTGCCCGCGGCG RPE_0504 551352 - 552158 + | undecaprenyl pyrophosphate phosphatase RPE_0505 553176 - 552190 - | NAD-dependent epimerase/dehydratase TERM 517 553213 - 553226 + H 76 -5.9 -4.56597 | opp_overlap 553213 TATGTCGTTGAATGA CGCCG GTTG TGGCG TTTTTGCCAACAGCC RPE_0506 553432 - 553980 + | thioesterase superfamily protein TERM 518 554728 - 554746 + G 75 -9.5 -4.11805 | opp_overlap 554725 CCACGGCACCAACCG GCCGTCG TCGAT CGGCGGC TTTGTGTCCTATGGT RPE_0507 554330 - 554845 + | ErfK/YbiS/YcfS/YnhG TERM 519 554849 - 554870 + F 71 -8.7 -3.90744 | ACCGCGCGCTGACCT CGTTCGACT ACCA GGTCGAGCG TTCTTTCAGGGCCGC TERM 520 554879 - 554902 + F 100 -17.4 -4.91852 | TCGAGCGTTCTTTCA GGGCCGCGTC GAGA GGCGCGGCCC TTTGTTTTTGCTGAG TERM 521 554963 - 554977 + F 74 -5.6 -4.43037 | TTGGGCCCTGTATTC GTACGC ACA GCGAAC TTTAGTTTTTGTTCA TERM 522 555925 - 555959 + G 77 -7.6 -4.32034 | ATTGCTCGCCGAAGT GGCCAGCGTTGGGCGC ATC GCGCTCGCGGTCGGCC TTTTGGTGGTGCTGG RPE_0508 555038 - 557059 + | methyl-accepting chemotaxis sensory transducer TERM 523 557233 - 557252 + T 73 -6.4 -4.36914 | opp_overlap 557233 557232, overlap 557235 GGCTAGGGGAGAAAT TTTCGGCT GCCC AGCCGATA TTTTCTGGCCGGGCG TERM 524 557235 - 557250 + T 71 -9 -3.79419 | opp_overlap 557233 557232, overlap 557233 CTAGGGGAGAAATTT TCGGCT GCCC AGCCGA TATTTTCTGGCCGGG RPE_0509 558275 - 557289 - | cation diffusion facilitator family transporter TERM 525 557544 - 557526 - G 71 -3.1 -4.57569 | gap 1, overlap 557527 557528 GCAGCGCTGCAAAAA TCCGCGCA CCGC CGC-CGGA TCGATCTCACGCGGC TERM 526 558653 - 558670 + G 79 -6.9 -4.64861 | TGTCGATCGTTCATC GCGCCAC GGGC GTTGCGC TTTATTTTGGCACGC RPE_0510 558568 - 558966 + | succinate dehydrogenase, cytochrome b subunit TERM 527 559034 - 558998 - g 74 -5.7 -4.56597 | overlap 559003 GGGGCCGGGGAAAAA CACCATGCGCACGCCGC TCG GCAAGGTGCGCAAATTG GGTCCCGCCCGCTCC RPE_0511 558963 - 559376 + | succinate dehydrogenase, cytochrome b subunit sdhA 559380 - 561203 + | succinate dehydrogenase flavoprotein subunit RPE_0513 561231 - 561671 + | hypothetical protein TERM 528 561904 - 561886 - g 73 -11 -3.72324 | overlap 561889 GATCTGGATCAAGAA CAACGTCG ATC CGACGCTG ACCTTCCGACGCTCC TERM 529 561901 - 561889 - g 73 -9.1 -3.99374 | overlap 561886 CTGGATCAAGAACAA CGTCG ATC CGACG CTGACCTTCCGACGC sdhB 561683 - 562465 + | succinate dehydrogenase iron-sulfur subunit TERM 530 562496 - 562516 + F 100 -16.9 -4.30014 | TCGTCGCGCTGCCAA TGGCCGGAC CTT GTCCGGCCA TTTTGCGTTGGTCCC RPE_0515 562616 - 563104 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein RPE_0516 563104 - 563349 + | hypothetical protein TERM 531 563839 - 563795 - g 74 -12.5 -3.53012 | overlap 563759 563796 CGTCGCCGCGCCAAA GGCCCCGGCGCCGCCGGCCGC GCC GCCGCCGGCCGCCCCCCGGGC TGCGCCGCCTCCGCC TERM 532 563839 - 563796 - g 75 -15.8 -2.71712 | gap 1, overlap 563759 563795 GTCGCCGCGCCAAAG GCCCCG-GCGCCGCCGGCCGC GCC GCCGCCGGCCGCCCCCCGGGC TGCGCCGCCTCCGCC RPE_0517 563607 - 565493 + | OmpA/MotB domain-containing protein TERM 533 565542 - 565514 - T 89 -17.5 -3.13853 | opp_overlap 565515 565520, overlap 565520 CGAACTACGCAAAAT GGAAAAGCCGCGC ATC GCGCGGCTTTTCT TTGGGTGGATGAGGA TERM 534 565515 - 565541 + T 100 -21 -3.6682 | opp_overlap 565514 565520, overlap 565520 GAACTACGCAAAATG GAAAAGCCGCGC ATC GCGCGGCTTTTC TTTGGGTGGATGAGG TERM 535 565520 - 565536 + T 100 -15.1 -4.90778 | opp_overlap 565514 565520, overlap 565515 ACGCAAAATGGAAAA GCCGCGC ATC GCGCGGC TTTTCTTTGGGTGGA TERM 536 565536 - 565520 - T 100 -15.1 -4.43272 | opp_overlap 565520 565515, overlap 565514 ACGCAAAATGGAAAA GCCGCGC ATC GCGCGGC TTTTCTTTGGGTGGA RPE_0518 566143 - 565748 - | membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) TERM 537 566261 - 566233 - R 75 -13.9 -3.08813 | gap 1 CGTCATCTCAAGATA GCCTTGGCCGGC GTGGCT GCCGGCC-AGGC TGATCGGTCCCTCCC RPE_0519 567291 - 566209 - | hypothetical protein RPE_0520 569746 - 567281 - | hypothetical protein TERM 538 569123 - 569135 + g 83 -4.7 -5.08255 | overlap 569093 569092 GGTTTCCAGCGCCGC CCGCG GGC CGAGG TTTTGTTTTCCGACT TERM 539 569412 - 569358 - G 81 -3.9 -5.00616 | opp_overlap 569373, overlap 569360 GGCGGCGCCAAAAAA CCCTGCAGATCGGCGCCGCTGATGC TCGGC GCGGCGCCGGCCTCGATCGGCAGCG ACAGCGGTTCGATGC RPE_0521 570426 - 569743 - | ABC transporter related TERM 540 569839 - 569825 - G 100 -11.4 -4.4891 | overlap 569827 GTCACCATCAGAAAA CCGCAG CCG CTGCGG CTGATCAGATCGCGC TERM 541 570184 - 570135 - G 82 -17 -3.03159 | gap 1, overlap 570138 570160 TGAATTGCTGGAACA CCAGCCCGA-GCCGGTCGCGGCG AAACG CGGCGCGGCCGGCATCGGGCAGC GCGGTGATCACGGTG TERM 542 570181 - 570138 - G 100 -21.7 -2.73994 | gap 1, overlap 570135 570160 ATTGCTGGAACACCA GCCCGA-GCCGGTCGCGGCG AAACG CGGCGCGGCCGGCATCGGGC AGCGCGGTGATCACG TERM 543 571366 - 571320 - g 81 -8.5 -4.56597 | gap 1, overlap 571324 GGCCCGGCGCAAAAA CTGAGCGTGCGCCGCGACGGCG TGCG CGCCGACGTCGC-CAAGCTCGG CCGGCATCTGGCCTG RPE_0522 570609 - 571853 + | hypothetical protein RPE_0523 572050 - 571862 - | hypothetical protein RPE_0524 572237 - 572437 + | hypothetical protein RPE_0525 572972 - 572532 - | hypothetical protein TERM 544 573036 - 573005 - R 91 -16.6 -3.64703 | opp_overlap 573006, overlap 573006 GGGTTTTGACGCAAA TCGGCCGATCGCTG GATG CAACGATCGGCCGT TTCAACTTTCAAGGC TERM 545 573035 - 573006 - R 90 -20.1 -2.78679 | opp_overlap 573006, overlap 573005 GGTTTTGACGCAAAT CGGCCGATCGCTG GATG CAACGATCGGCCG TTTCAACTTTCAAGG TERM 546 573006 - 573035 + r 100 -17.9 -3.71649 | opp_overlap 573006 573005 GGTTTTGACGCAAAT CGGCCGATCGCTG GATG CAACGATCGGCCG TTTCAACTTTCAAGG RPE_0526 575216 - 573108 - | TonB-dependent receptor, plug TERM 547 575189 - 575164 - G 76 -2.5 -4.90079 | gap 1, overlap 575166 575177 ACGGGAACAAGAAAA CTG-GTCGCG AACAGCG CGCGACGCCG CGAAGCGGGTGGGTG TERM 548 575608 - 575638 + H 70 -12.5 -2.87132 | gap 1, overlap 575608 CAGCGTGGCAGATTT GTCGGC-GCCCGGC TTGT GCCGGGCGGCAGGC TCTGTAAGAGCAACC RPE_0527 575693 - 576742 + | transport system permease protein RPE_0528 576739 - 577521 + | ABC transporter related TERM 549 577523 - 577533 + G 72 -8.2 -4.11216 | overlap 577512 GGGACGCCGCGTGAG GCGC GCC GCGC TTTTCGCGATGGCGG TERM 550 578107 - 578119 + G 72 -6.9 -4.19817 | overlap 578108 CGGGCGATCTCGGCA TCGCC TCG GGCGG TTTTGCCTCGCTGGA RPE_0529 577518 - 578354 + | periplasmic binding protein TERM 551 578833 - 578865 + G 71 -15 -2.52623 | gap 2, overlap 578832 578833 TGGAGCCCGGCGATG CGCGACGGCAACGGGC CCG GCCCGTTGC--TCGCG GTGTTCTGCGCCAAC RPE_0530 578497 - 579168 + | hypothetical protein RPE_0531 579294 - 580523 + | major facilitator transporter RPE_0532 580669 - 581865 + | acyl-CoA dehydrogenase domain-containing protein TERM 552 582153 - 582185 + T 91 -19.1 -2.87211 | overlap 582150 582157 582168 TCTTGCAGCTCCGGC CCGGCCGCCAGGCGA TTG TCGCCTGCCGGCCGA TCTCTCAGGCGGCGT RPE_0533 583308 - 582190 - | transposase IS116/IS110/IS902 family protein RPE_0534 583418 - 584557 + | acyl-CoA dehydrogenase domain-containing protein RPE_0535 585979 - 584936 - | extracellular solute-binding protein RPE_0536 586618 - 586028 - | ErfK/YbiS/YcfS/YnhG family protein TERM 553 586703 - 586687 - R 74 -10.1 -3.79668 | ATGGAACCCATCAAA TCGCACC GAC GGCGCGA TGGCAAGCTGACCGA TERM 554 586751 - 586804 + r 100 -20.5 -3.54424 | gap 3, opp_overlap 586730, overlap 586744 586797 CGCAAATCTTTCGCA CGTGTCCCGGG-C-GCGATGCGGCAT TCTTC ATGCCGCTTCGCAGACCCGGGAC-CG TTTCAAGCGCTGCCG RPE_0537 587041 - 586907 - | hypothetical protein RPE_0538 588054 - 587038 - | cytochrome d ubiquinol oxidase, subunit II TERM 555 587602 - 587572 - G 83 -9.6 -4.3208 | overlap 587573 GGTGAGAACCGAAAA CGGCGTCAGCCAGT CCC ACCAGCCGCCGCCA TAGCCGCGGCCCTCG TERM 556 587663 - 587637 - G 77 -15.8 -3.02144 | TCACGCCCTGCAAGA TGGCGCCGAGCG CCA CGCCCTGCGCCA GCGTCGCCAGCAGCG RPE_0539 589462 - 588056 - | cytochrome bd ubiquinol oxidase, subunit I TERM 557 588395 - 588353 - G 71 -9.2 -3.88291 | gap 2, overlap 588354 CAGCACCGCGACAAA GCCGGCCGGCCCCATCGCCA GCGCG TAGCGATGCAGC-GGCCG-C GAATTGAAGAGTTTA TERM 558 589643 - 589605 - R 100 -14.6 -5.01845 | gap 1, overlap 589606 589607 GAGAAGAATTAAAAA CGCGACGACCCGGTCGG GGGCAT CCGACCGGGTCGCTG-G AGGTTCGACGAAGAT TERM 559 589643 - 589606 - R 85 -14.8 -3.5948 | overlap 589605 589607 AGAAGAATTAAAAAC GCGACGACCCGGTCGG GGGCAT CCGACCGGGTCGCTGG AGGTTCGACGAAGAT TERM 560 589642 - 589607 - R 86 -18.3 -2.74061 | overlap 589605 589606 GAAGAATTAAAAACG CGACGACCCGGTCGG GGGCAT CCGACCGGGTCGCTG GAGGTTCGACGAAGA RPE_0540 590422 - 589811 - | RNA polymerase sigma factor RPE_0541 591355 - 590618 - | two component transcriptional regulator TERM 561 590953 - 590976 + g 72 -15.2 -2.74605 | overlap 590950 590949 GATTGGCCGGCTTGG CCGCGGCCGC GATC GCAGCCGCGG TGGGTTTTGGCGCGC RPE_0542 593013 - 591352 - | response regulator receiver sensor signal transduction histidine kinase TERM 562 593023 - 593039 + r 74 -10.1 -3.72576 | overlap 593024 593026 GATCACCGCGATCTT CCAGCGC CGC GCGTTGG TTTCCTCCAGCACGC RPE_0543 595154 - 593070 - | periplasmic sensor signal transduction histidine kinase RPE_0544 595364 - 596656 + | extracellular solute-binding protein RPE_0545 597063 - 596740 - | hypothetical protein TERM 563 597069 - 597104 + H 74 -13.2 -3.34962 | gap 1 CGGCGAGCATGCGCA GCCGCGCGCGGAGTCGC GCA GCAACGTCGC-CGCGGC TTGTCGGCTATAGCG TERM 564 597314 - 597344 + G 75 -11.7 -3.70902 | CCGCGCCGTGCTGTC CGGAGCCGCGGCG CTCGC CGCCGCCGTGCCG TTTCGCTCTCCCGCG RPE_0546 597267 - 598463 + | extracellular ligand-binding receptor TERM 565 598946 - 598932 - g 75 -11.4 -3.73775 | GCCATGTCCAGGAAA TCGCGC CCG GCGCGA TGAACCTGATGACCG RPE_0547 598628 - 599545 + | pirin domain-containing protein RPE_0548 599614 - 600531 + | phosphoribosylaminoimidazole-succinocarboxamide synthase RPE_0549 601705 - 600572 - | gamma-glutamyl kinase TERM 566 600968 - 600929 - G 77 -10.6 -3.85698 | gap 1, opp_overlap 600951 GGCGGGCGTCAGAAA CCAGGTGCA-GCGGCCGCC GTC GGCGATCGCCTGCAGCGGG TGCTCGATCTTGCCG obgE 602938 - 601889 - | GTPase ObgE TERM 567 602040 - 602066 + g 81 -5.8 -4.7629 | gap 1, opp_overlap 602026, overlap 602041 AGCGGCGTCTTCTTG GCGGCGCG-CT TCAGCC GGTCGCGCTGC TTTTTCAGTTCCTCC TERM 568 603106 - 603141 + G 86 -6.8 -4.91429 | gap 1, overlap 603109 GATCAGCGCCGCGCG CACCTC-GCCGGCATCG CGT TGATGCTGGCCGCGATG TTTTGTTTCGCCTTT RPE_0551 603058 - 603969 + | hypothetical protein TERM 569 604296 - 604276 - g 100 -14 -4.45664 | opp_overlap 604276 CCAATTGAATCAAAA TGGCCGGG ATCGA CCCGGCCA TTGCTTCAGCTTCGG TERM 570 604276 - 604296 + G 77 -14 -3.37612 | opp_overlap 604276 CCAATTGAATCAAAA TGGCCGGG ATCGA CCCGGCCA TTGCTTCAGCTTCGG RPE_0552 604141 - 604431 + | hypothetical protein RPE_0553 605719 - 604772 - | formate/nitrite transporter TERM 571 605570 - 605531 - G 81 -5.7 -4.8269 | overlap 605534 605537 CAGAACGATCAAAAA GAACAT-GCCGCCGAGCCC GATC GAGC-CGCCGGCGATGATC GACAGCATGAAGGCC TERM 572 605567 - 605534 - G 76 -6 -4.50218 | overlap 605531 605537 AACGATCAAAAAGAA CAT-GCCGCCGAGCCC GATC GAGC-CGCCGGCGATG ATCGACAGCATGAAG TERM 573 605908 - 605948 + r 91 -9 -4.56597 | gap 1, opp_overlap 605916, overlap 605909 605910 605919 GGACGAGGATGTCCT CCAGCTAATCATGGCCGGG ACCG CCCGGCCATGATT-GCAAA TTTTTCACCAGAGCA TERM 574 605909 - 605947 + r 74 -12.5 -3.33744 | gap 1, opp_overlap 605916, overlap 605908 605910 605919 GACGAGGATGTCCTC CAGCTAATCATGGCCGGG ACCG CCCGGCCATGATT-GCAA ATTTTTCACCAGAGC TERM 575 605910 - 605946 + r 80 -16 -2.60032 | gap 1, opp_overlap 605916, overlap 605909 605908 605919 ACGAGGATGTCCTCC AGCTAATCATGGCCGGG ACCG CCCGGCCATGATT-GCA AATTTTTCACCAGAG TERM 576 605941 - 605916 - R 91 -19.1 -3.05463 | opp_overlap 605910 605909 605908 605919 ATGTCCTCCAGCTAA TCATGGCCGGG ACCG CCCGGCCATGA TTGCAAATTTTTCAC TERM 577 605919 - 605938 + r 75 -15 -2.7563 | opp_overlap 605916, overlap 605910 605909 605908 TCCTCCAGCTAATCA TGGCCGGG ACCG CCCGGCCA TGATTGCAAATTTTT RPE_0554 606563 - 605967 - | GCN5-related N-acetyltransferase TERM 578 606624 - 606649 + r 91 -16.1 -3.55548 | opp_overlap 606624, overlap 606648 CGCATCACAGAAAAA GGGGAGGCCGG TTGT CCCGCCTCCCC TTTGGAGCCCTGTTG TERM 579 606649 - 606624 - R 100 -16.1 -5.00895 | opp_overlap 606624 606648 CGCATCACAGAAAAA GGGGAGGCCGG TTGT CCCGCCTCCCC TTTGGAGCCCTGTTG TERM 580 606664 - 606697 + r 83 -14.6 -3.44325 | gap 1, overlap 606648 606688 606693 CTTTGGAGCCCTGTT GCGCTCCGCCGGTTC ATCAG GACCCGGCGGA-CGC TTGATTGTCCACCGT rpmA 606982 - 606713 - | 50S ribosomal protein L27 rplU 607438 - 607064 - | 50S ribosomal protein L21 TERM 581 607409 - 607419 + g 76 -8.2 -4.2828 | AACGACGCGGTACTG CCGG CCG CCGG TTTTGATGACTGCGA TERM 582 607651 - 607621 - H 86 -8.3 -4.67011 | gap 2, opp_overlap 607639, overlap 607622 607624 AAGGCCACGCAAAAA CGA-C-GGCGCGAGA AAT TCCCGCGCCGGACCG GGCAGTTATAGGGGC TERM 583 607646 - 607624 - H 91 -17 -3.26405 | opp_overlap 607639, overlap 607622 607621 GCCACGCAAAAACGA CGGCGCGAGA AAT TCCCGCGCCG GACCGGGCAGTTATA TERM 584 607954 - 607971 + G 70 -9.8 -3.64609 | GGCTTTCTCGGCGAC CGCGCC AGCAAG GGCGCG TTTCAGGTGATTCTC RPE_0557 607834 - 609009 + | hypothetical protein RPE_0558 609299 - 610942 + | phage integrase family protein TERM 585 611080 - 611049 - g 74 -7.8 -4.25104 | gap 1 TGTTGCTCAGGAAAA CGGGGCGCGCGAGCG GGT CGC-CGAGCGCCATG GCATTCAGAAATCCG RPE_0559 610939 - 611280 + | hypothetical protein RPE_0560 611404 - 614295 + | SNF2-related protein TERM 586 615526 - 615505 - g 86 -5.9 -5.06414 | overlap 615508 TCCCGCGAATAAAAA GGATCAATG ATGG CATTGATAC AAGTGGGGTAACCGA RPE_0561 614292 - 616082 + | DNA methylase N-4/N-6 domain-containing protein TERM 587 616657 - 616667 + G 72 -6.8 -4.25104 | CCTGTCTAGCCTGCC GGAC CTC GTCC TTTTAATGGACGAGG RPE_0562 616082 - 618766 + | type III restriction enzyme, res subunit RPE_0563 618933 - 620498 + | hypothetical protein RPE_0564 621738 - 621349 - | hypothetical protein TERM 588 621715 - 621704 - G 72 -7.2 -4.27316 | opp_overlap 621711 621711 TCGTCGAAGCGAAAA CGGC GGCT GCCG TACCGGTGGGTACGA RPE_0565 621932 - 622225 + | hypothetical protein RPE_0566 622209 - 622484 + | hypothetical protein TERM 589 622489 - 622521 + T 86 -15.8 -3.57792 | gap 1, opp_overlap 622495, overlap 622495 AACGAGGGTAACCAT GA-AAAAGGCCCCGA GTGA TCGGGGCCTTTTCTC TTTGCCAATGGCTGG TERM 590 622495 - 622514 + T 100 -15 -4.78848 | opp_overlap 622495, overlap 622489 GGTAACCATGAAAAA GGCCCCGA GTGA TCGGGGCC TTTTCTCTTTGCCAA TERM 591 622514 - 622495 - T 100 -15 -4.81083 | opp_overlap 622495 622489 GGTAACCATGAAAAA GGCCCCGA GTGA TCGGGGCC TTTTCTCTTTGCCAA RPE_0567 623060 - 622803 - | hypothetical protein TERM 592 622968 - 622953 - G 71 -9 -3.85362 | AATGCAATCATCAAA GCCCTT CCGG AAGGGC TGCCCCTGAAACCGC TERM 593 624281 - 624270 - g 81 -5.8 -4.79223 | overlap 624271 CGACATCATCAAAAA GCGT TGCA ACGC ATCGAAAGCACGCTC TERM 594 624668 - 624645 - g 78 -10.3 -4.08945 | AGCACCTCGCTAAAA CGGCATCAG TCGGTG CCGATGCCG CTGCACTCAAAGTCT RPE_0568 623228 - 625360 + | hypothetical protein TERM 595 626179 - 626155 - T 95 -20.1 -3.28712 | opp_overlap 626159 TGTCCCTTCGCATAA CGCACGCCGAT ATC ATCGGCGTGCG TTGGGGCTTCGCCCC RPE_0569 627216 - 626347 - | restriction endonuclease-like protein RPE_0571 629149 - 628259 - | hypothetical protein RPE_0572 629776 - 629414 - | ribose 5-phosphate isomerase B RPE_0573 630567 - 629881 - | ribulose-phosphate 3-epimerase RPE_0574 631552 - 630596 - | beta-lactamase RPE_0575 632796 - 631564 - | hypothetical protein TERM 596 631602 - 631615 + g 75 -4.5 -4.68132 | gap 1, overlap 631604 GTGGAAAATACTCGC GCCTGG TTC CC-GGC TTTCTTTCTGTATTG TERM 597 632192 - 632167 - G 72 -4.5 -4.4874 | CCCAAAAAGCGAAAA GCCTGGCACGA TCGC TCGAGCCTCGC TGACGTAAGGATATG RPE_0576 635208 - 632857 - | hypothetical protein TERM 598 634843 - 634853 + g 83 -2.4 -5.24531 | GTCATAGCGCTCTGG CAGG AAA CCCG TTTTTTGTCCGGCCT RPE_0577 637109 - 636114 - | hypothetical protein TERM 599 636483 - 636453 - G 72 -8.8 -4.04206 | GTAGGTCCAGACAAA GGCTGCGGCGTGCG TGT CGCGCGCCTCAAAC AGCCCCTTGATCACG TERM 600 637916 - 637929 + G 75 -6.7 -4.4017 | ATCTAGCGATGTTTA TGACG ATGC CGTCA TTTTCTCCGGCTTGG TERM 601 638181 - 638160 - g 70 -3.7 -4.46926 | gap 1, opp_overlap 638160 GATGCTACGAGAAAA GGAGAAG-CG CGA CGACTTTTCC TTCAATATAAGGGAA RPE_0578 637551 - 638279 + | hypothetical protein nadE 639691 - 638654 - | NAD synthetase TERM 602 639007 - 639023 + g 72 -11.5 -3.61398 | CGATCGGCTTGAAGT CGGCGGC ACC GTCGCCG TTCTTGACGAAGAAG RPE_0580 641229 - 639688 - | AMP-dependent synthetase and ligase RPE_0581 641546 - 641280 - | hypothetical protein RPE_0582 643511 - 641559 - | asparagine synthase (glutamine-hydrolyzing) TERM 603 643623 - 643598 - H 71 -4.7 -4.44046 | overlap 643594 643599 643600 TTCACCGTAAACAAA GGTTCTTCTGA ATCG TCAGAAGACGC CTCGCACGAGCTGAG TERM 604 644520 - 644533 + G 70 -3.7 -4.46212 | overlap 644521 CCGTTGGAGACGATT GCGCC AGCT GGCGA TTTTCTCCTGAGCAG RPE_0583 643899 - 645104 + | hypothetical protein RPE_0584 646652 - 645201 - | hypothetical protein RPE_0585 648498 - 646804 - | enoyl-CoA hydratase TERM 605 647611 - 647629 + g 72 -11.6 -3.54158 | opp_overlap 647601, overlap 647601 647604 647606 AGCAACGTCCGCAGG CGGCGCGG TTT CCGCGGCG TTGATTGTTAGCGTG TERM 606 647777 - 647796 + g 77 -10.7 -3.75897 | opp_overlap 647776 GAAGCGGCAGCGAAG GTGGCGG CGCGTT CCGCCAC TTTGGCTTCGAGCTT RPE_0586 649435 - 648605 - | alpha/beta hydrolase fold TERM 607 649280 - 649258 - G 81 -16.2 -3.0976 | opp_overlap 649257, overlap 649250 GCGAATAGGCGAACA CGCCGGCGCC GGT GGCGGCGGCG ATCTGTTCGGGGAAA RPE_0587 650629 - 649460 - | alcohol dehydrogenase TERM 608 650188 - 650171 - G 77 -14.1 -3.37796 | overlap 650153 GCCGATCATGCAGAA GGCGCCG ACCT CGGCGCC GTCGCCGTCGCGCCG TERM 609 651075 - 651049 - g 77 -10.8 -3.83102 | opp_overlap 651070, overlap 651050 GAAATCATGAGCAAA GGCGGCAGCTTC GCC GAAGCTGCGGCA TTGACCGGCGGCCGC TERM 610 651074 - 651050 - g 71 -14.3 -2.89138 | opp_overlap 651070, overlap 651049 AAATCATGAGCAAAG GCGGCAGCTTC GCC GAAGCTGCGGC ATTGACCGGCGGCCG TERM 611 651441 - 651406 - g 72 -8.9 -4.07568 | CGGGCGTTTGCAAAA CTGCGCAGCATCGGC GTCACG GTCGACGCCTCGCAG GTCGCGGTTCGCGAC RPE_0588 650803 - 651528 + | Crp/FNR family transcriptional regulator RPE_0589 652547 - 651561 - | molybdopterin dehydrogenase, FAD-binding protein TERM 612 652092 - 652122 + g 77 -13.2 -3.62046 | GTGGCAGCGCTTACC CTGCGGCGCGACAT GGC AGGTCTCGCCGCGG TTCTTCAGACAATAG RPE_0590 654880 - 652544 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TERM 613 653578 - 653589 + g 77 -5.8 -4.62336 | overlap 653565 653562 CCATGCCGAGGCCTT TGCC CGGC GGCA TTTTTCCGATCCGCT RPE_0591 655368 - 654877 - | 2Fe-2S iron-sulfur cluster binding domain-containing protein TERM 614 656131 - 656117 - g 71 -2.7 -4.58283 | overlap 656119 CAATCTCTCCAAAAA CGTCG GCGTG CGTCG AATCGGCTATCGCGA TERM 615 656695 - 656673 - g 77 -10.6 -3.88559 | opp_overlap 656660, overlap 656663 AATCAGCGCGACAAA TCGCGGATGA CTT TCATCGGCGA ATGGACCCGAACCGG TERM 616 657062 - 657106 + G 71 -12.8 -3.21595 | overlap 657100 GCAACGCTATATGTT GCGCGAGATGGCGCTGGACC AGAAC GGTCCAGTGTGAGGTCGCGC TTGATCGTGCGACTT RPE_0592 655533 - 657098 + | benzoate-CoA ligase family RPE_0593 657245 - 658423 + | extracellular ligand-binding receptor TERM 617 658447 - 658471 + F 89 -11.3 -4.26903 | opp_overlap 658447 TCACGATCAACAGAA GAGGCGGACGA ATT TCGGCCGCCCC TTTTCGTGCCATCCG TERM 618 658471 - 658447 - f 84 -13.5 -3.72742 | opp_overlap 658447 TCACGATCAACAGAA GAGGCGGACGA ATT TCGGCCGCCCC TTTTCGTGCCATCCG RPE_0594 658523 - 659383 + | inner-membrane translocator RPE_0595 659385 - 661175 + | ABC transporter related TERM 619 661796 - 661828 + G 70 -10.6 -3.53444 | GTCGAACTGGTCGAC CGCCACGTCATCCT GACCA AGGGTGAAGTGGTG TTTGAAGGAACGTCG RPE_0596 661172 - 661894 + | ABC transporter related RPE_0597 661921 - 662889 + | GCN5-related N-acetyltransferase RPE_0598 662927 - 663406 + | GCN5-related N-acetyltransferase RPE_0599 663484 - 663945 + | BadM/Rrf2 family transcriptional regulator RPE_0600 664490 - 663966 - | rubrerythrin RPE_0601 665326 - 664487 - | pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit TERM 620 665046 - 665016 - G 86 -9.6 -4.65895 | overlap 665018 665042 CCGCCGATCGAAAAA CCGTCGCCGTCGCC GCT GGCGACAATGACCG TGAGATCGGGCCGCG RPE_0602 667056 - 665323 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 621 666585 - 666599 + g 72 -11.4 -3.57561 | overlap 666566 TCGCCGCCGCAATGG CCGCGA CGA TCGCGG TTTCAGGAATTCCGA RPE_0603 667410 - 667165 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 622 667323 - 667335 + g 70 -10.5 -3.75437 | opp_overlap 667323 GATCGACCCGATACA GCGGG TCG CCCGC TTTGATCGCATCGTT RPE_0604 669014 - 667443 - | benzoate-CoA ligase family RPE_0605 669957 - 669124 - | benzoyl-CoA reductase, subunit D TERM 623 669434 - 669465 + g 77 -5.8 -4.63542 | overlap 669457 669458 ATGTTGATGACGTCG GTCTCGGCCAGC ACCGCGCA GATGCCCGAGAC TTTTTCGGGATTGTC TERM 624 669563 - 669550 - G 70 -3.7 -4.57073 | opp_overlap 669550 GATGTTCTCCAAAAA CTGGC CGGA GCCCG AGGCGCACTGGCTGG RPE_0606 671281 - 669968 - | benzoyl-CoA reductase, subunit A TERM 625 670690 - 670702 + g 71 -3.3 -4.68424 | overlap 670681 670697 CGAGCATGCGCGCGA TGCCG CGG CGGAA TTTTTCGCTGAGTTC RPE_0607 672601 - 671291 - | benzoyl-CoA reductase, subunit B RPE_0608 673782 - 672598 - | benzoyl-CoA reductase, subunit C TERM 626 673669 - 673686 + g 70 -9.8 -3.75153 | opp_overlap 673657 GAAGCCGACCACGAT GCGGCC CGGCTC GGCCGC TTTCCATTCCCGCGC TERM 627 673769 - 673726 - G 72 -8.6 -4.09864 | gap 1, opp_overlap 673739, overlap 673728 ACTGAGGTCGGAAAA CAGCGCCTCGCAGCGGGCGAC GAT GTCGCCCGTGGTCTGGCGC-G CCCTGTCGAGCATGC TERM 628 673768 - 673728 - G 77 -12.3 -3.64716 | opp_overlap 673739, overlap 673726 TGAGGTCGGAAAACA GCGCCTCGCAGCGGGCGAC GAT GTCGCCCGTGGTCTGGCGC GCCCTGTCGAGCATG TERM 629 673739 - 673757 + g 74 -16 -2.62184 | opp_overlap 673728 673726 AACAGCGCCTCGCAG CGGGCGAC GAT GTCGCCCG TGGTCTGGCGCGCCC RPE_0609 675164 - 674145 - | alcohol dehydrogenase RPE_0610 675767 - 675240 - | MarR family transcriptional regulator RPE_0611 675902 - 676669 + | short-chain dehydrogenase/reductase SDR RPE_0612 676696 - 677478 + | naphthoate synthase TERM 630 677523 - 677500 - f 78 -15.2 -2.71731 | overlap 677479 CGGATCGTTGAATGA TGCGCCGGGG TCAA CCCCGGCGCC CCAACGCAATCAGGA RPE_0613 677552 - 678703 + | acyl-CoA dehydrogenase domain-containing protein RPE_0614 678749 - 680392 + | cyclohexanecarboxylate-CoA ligase RPE_0615 680445 - 681221 + | enoyl-CoA hydratase/isomerase TERM 631 681369 - 681410 + G 72 -8.7 -4.08064 | gap 1 CATGAATCATTGTCG CGATCAAACCGTCGTCGGGC TTC GCCTCACC-CGGTTCGATCG TTTTCCGGACACGTT TERM 632 681961 - 681996 + G 78 -16 -3.16564 | GTGGAATGCGGCCGG GTCGGCGGCGCGGCCG GGAT CGACCACGCCGCCGAA TTCATCGCCTCGGCG RPE_0616 681355 - 682416 + | succinylglutamate desuccinylase/aspartoacylase TERM 633 683066 - 683036 - g 70 -6.1 -4.18197 | gap 1, overlap 683037 ATTGGGGATCGAAAA GCGGC-TCGCGCAA AATC TTTCGCGAGGCCGG GATCGAGATGCCGCT RPE_0617 682456 - 684033 + | hypothetical protein RPE_0618 685955 - 684039 - | von Willebrand factor, type A TERM 634 686259 - 686291 + r 91 -19.1 -2.87211 | overlap 686256 686263 686274 TCTTGCAGCTCCGGC CCGGCCGCCAGGCGA TTG TCGCCTGCCGGCCGA TCTCTCAGGCGGCGT RPE_0619 687414 - 686296 - | transposase IS116/IS110/IS902 family protein RPE_0620 688322 - 687501 - | ATPase TERM 635 688374 - 688345 - R 100 -14.9 -4.41348 | opp_overlap 688366, overlap 688346 688347 TCCCGGGCAAAGAAA GCGGCGGCCGCGA AAAT CCGCGGCCGCCAG TTGGGCCTATTCGGC TERM 636 688373 - 688346 - R 91 -18.4 -3.24488 | opp_overlap 688366, overlap 688345 688347 CCCGGGCAAAGAAAG CGGCGGCCGCGA AAAT CCGCGGCCGCCA GTTGGGCCTATTCGG TERM 637 688372 - 688347 - R 90 -19.7 -2.54371 | opp_overlap 688366, overlap 688346 688345 CCGGGCAAAGAAAGC GGCGGCCGCGA AAAT CCGCGGCCGCC AGTTGGGCCTATTCG RPE_0621 689727 - 688381 - | cytochrome c oxidase, subunit I TERM 638 688560 - 688510 - G 77 -12.4 -3.68988 | GCGCACCCAATAGAA CAGCGCGAGTTGGTCCTGCACTTC CAT GAAACCCTGGCCCAGCACGCGCTG CAGATGCACCTGGAT TERM 639 689707 - 689674 - G 78 -10.4 -4.06419 | opp_overlap 689674 TTGCGCGATAAACAA GGTGAGCGC-GCCGTA GAAA TACAGCAGCGC-CACC TTTTGGGTTTGATAT TERM 640 689674 - 689707 + g 79 -8.2 -4.38313 | opp_overlap 689674 TTGCGCGATAAACAA GGTGAGCGC-GCCGTA GAAA TACAGCAGCGC-CACC TTTTGGGTTTGATAT RPE_0622 690213 - 689761 - | nitric-oxide reductase RPE_0623 690623 - 690339 - | hypothetical protein RPE_0624 691222 - 690629 - | cytochrome c oxidase, subunit III TERM 641 690931 - 690881 - G 83 -13.9 -3.87815 | gap 1, opp_overlap 690914 CTTGAGCGCGATAAA GCCTGCGCCGAGCGCG-ATGGC GCCGACCA GCCACGCTCGCGCGGCGCGGGC GTTGGCTGCGTGGGC TERM 642 690914 - 690932 + g 72 -13.8 -3.07935 | opp_overlap 690881 GGCGCCGACCAGCCA CGCTCGCG CGG CGCGGGCG TTGGCTGCGTGGGCT RPE_0625 691710 - 692180 + | hypothetical protein TERM 643 692534 - 692561 + T 77 -13.4 -3.34398 | opp_overlap 692536, overlap 692531 692536 692558 ACTTTCCATCTGGAG AAGACCGGGGCC CTTG GGTCCCGGTCTC TGTTTCAGCCCGAAG TERM 644 692536 - 692559 + T 86 -16 -3.24232 | opp_overlap 692536, overlap 692534 692531 692558 TTTCCATCTGGAGAA GACCGGGGCC CTTG GGTCCCGGTC TCTGTTTCAGCCCGA TERM 645 692559 - 692536 - T 77 -13.8 -3.31144 | opp_overlap 692534 692531 692536 692558 TTTCCATCTGGAGAA GACCGGGGCC CTTG GGTCCCGGTC TCTGTTTCAGCCCGA RPE_0626 692763 - 692584 - | antenna complex, alpha/beta subunit RPE_0627 692909 - 692778 - | antenna complex, alpha/beta subunit TERM 646 693377 - 693343 - R 100 -21.5 -2.94912 | overlap 693366 TCGTCAATCGAGATA CCGCAGGCGAGGTCC GGAGA GGACATCGCCTGCGG CTGTGGCAACCCGCG TERM 647 693868 - 693845 - R 77 -13.8 -3.28712 | opp_overlap 693842 693867 GCTTTCCGGCTAGAA GACCGGGGCC CTTG GGTCCCGGTC TGGCTGTTGCAGCCC RPE_0628 694073 - 693894 - | antenna complex, alpha/beta subunit RPE_0629 694231 - 694088 - | antenna complex, alpha/beta subunit RPE_0630 694636 - 695349 + | two component LuxR family transcriptional regulator TERM 648 696773 - 696744 - g 78 -6.4 -4.68593 | gap 1, opp_overlap 696747 696748 GCCACGATCGAAAAA CTCG-CCGACCTC GTCGG GCAGTCGGACGAG GCCGAATTGTTTCAG RPE_0631 695586 - 697883 + | multi-sensor signal transduction histidine kinase TERM 649 698095 - 698072 - g 83 -8.8 -4.62471 | gap 1, opp_overlap 698072 698084, overlap 698074 GCGAATGTCGAAAAA CTCCTC-GGCG TGC CGCCTGAGGCG GTTCTGGCCGCACCA RPE_0632 697880 - 700210 + | multi-sensor signal transduction histidine kinase RPE_0633 700207 - 700671 + | response regulator receiver protein RPE_0634 700668 - 701807 + | response regulator receiver sensor signal transduction histidine kinase TERM 650 703035 - 703053 + G 93 -11 -4.3467 | opp_overlap 703008 ACGGCCGCATCACCG CCTATCGC GGC GCGATGGG TTTTGGTATCCGCCT RPE_0635 701936 - 705385 + | pyruvate carboxylase TERM 651 706029 - 705994 - g 72 -12 -3.61398 | gap 1, overlap 705997 706020 TTCCGCCGTCAAGAA GC-ACGCCAATGTCCAG ATG CTGAACATCGACGTCGC CAACGGCTACACCGA RPE_0636 705650 - 706693 + | guanosine 5'-monophosphate oxidoreductase RPE_0637 707029 - 707904 + | methyltransferase small TERM 652 708598 - 708643 + G 90 -18.3 -3.54424 | gap 1 GCAGCGGCTCGCGGA CGGCGAGGCGCCGCGCGATCTC ACC GACATC-CGCGGCGTCGCGCTG TTTCGCAAGGTGCCG RPE_0638 707963 - 710005 + | radical SAM domain-containing protein TERM 653 710039 - 710049 + T 78 -4.6 -4.7173 | TGCTTGTGCTAGGCC GCGG CGA TCGC TTTTTCGATATCGTG RPE_0639 710436 - 710032 - | AtsE TERM 654 710480 - 710459 - R 70 -12.9 -2.85297 | opp_overlap 710474, overlap 710456 CCACGTGAAAGAGGA CGCGCGCCC GAGC GGGCGCGTG GGGATCAATCGATCG TERM 655 710474 - 710503 + r 74 -12.1 -3.39895 | opp_overlap 710459 710489 710493 CGCGCGCCCGAGCGG GCGCGTGGGGATC AATC GATCGCGACGCGC TTGGTTCCTGGACCA RPE_0640 710878 - 710546 - | hypothetical protein TERM 656 712478 - 712461 - R 86 -8.3 -4.61527 | overlap 712462 712463 AAAATCCTGGAAAAA GCCGGCG GCGG CGCCGTC GCCACGGGGCCTGGG RPE_0641 714126 - 712648 - | periplasmic sensor signal transduction histidine kinase rpmH 714476 - 714610 + | 50S ribosomal protein L34 RPE_0643 714634 - 714975 + | ribonuclease P protein component TERM 657 716154 - 716165 + G 81 -5.8 -4.83615 | opp_overlap 716144 ACCAAGCCGATGTTC GTCG CGCT CGAC TTTTTCTACCACCTC RPE_0644 714993 - 716873 + | putative inner membrane protein translocase component YidC TERM 658 716877 - 716864 - f 91 -5.2 -5.29445 | opp_overlap 716873 CGCCAAGAAGAAAAA GGCG ACCTGA CGCC TGGCGCTGACTTCAC RPE_0645 716986 - 717636 + | GTPase EngB TERM 659 717891 - 717905 + G 77 -5.6 -4.62069 | CTGTTCGCCGGCGAC CTGACG CTA CGGCAG TTTTTGGGCTACGGC RPE_0646 717636 - 718013 + | hypothetical protein TERM 660 718498 - 718470 - g 80 -15.9 -3.25823 | overlap 718471 718473 GGTCGGCTACATCAA CGAGGCCGGCGGC AAG GCCGTCGGCCTCT GCGGCAAAGACGGCA TERM 661 718497 - 718471 - g 93 -19.4 -2.55351 | overlap 718470 718473 GTCGGCTACATCAAC GAGGCCGGCGGC AAG GCCGTCGGCCTC TGCGGCAAAGACGGC TERM 662 718495 - 718473 - g 79 -16.2 -2.81547 | overlap 718471 718470 CGGCTACATCAACGA GGCCGGCGGC AAG GCCGTCGGCC TCTGCGGCAAAGACG RPE_0647 718117 - 719013 + | acetylglutamate kinase RPE_0648 719184 - 720185 + | peptidoglycan binding domain-containing protein RPE_0649 720235 - 720933 + | pyrimidine 5'-nucleotidase RPE_0650 721306 - 721007 - | excinuclease ABC subunit C dapD 721484 - 722329 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 663 722648 - 722666 + G 77 -3.7 -4.72272 | CGATCGCGACAAGAG CGGCTGG TGGAT CCTGCTG TTTTTGCTGGCGCCG RPE_0652 722310 - 722858 + | hypothetical protein TERM 664 724017 - 723992 - g 83 -12.5 -4.11692 | opp_overlap 724000 CAGCGATCTGGAAAA GCTCACCGCGA TCTA TCGCGGCGTGC TGGAGCGGTATTTCG RPE_0653 722874 - 724037 + | succinyl-diaminopimelate desuccinylase TERM 665 724169 - 724116 - T 70 -12.6 -2.90496 | gap 3, opp_overlap 724118, overlap 724113 GTTGTTTTCAAAGGA TCGAG--ATTCCGGGTTCGCTCGCAGC TTC GCTGCAAGCGC-CCCGGAATGACTCGT TGAAGCATTTCAGCG TERM 666 724118 - 724165 + T 72 -13.4 -2.72855 | gap 1, opp_overlap 724116 724113 TGTTTTCAAAGGATC GAGATTCCGGGTTCGCTCGCAGC TTC GCTGCAAGCGC-CCCGGAATGAC TCGTTGAAGCATTTC truA 724928 - 724188 - | tRNA pseudouridine synthase A fmt 726080 - 725097 - | methionyl-tRNA formyltransferase RPE_0656 726654 - 726112 - | peptide deformylase TERM 667 726142 - 726156 + g 70 -8.5 -3.95219 | CGGAACGAATTTGTA GCCGC GCTTG GCGGC TTTCTCGAATTTGCG TERM 668 726749 - 726767 + H 78 -6.6 -4.564 | overlap 726761 CTGCCATCGACAGCC GTCGTCGC GCG GCGGGGAC TTTTAATTTCCCGTT TERM 669 726884 - 726923 + G 72 -13.6 -3.15861 | gap 1, overlap 726873 726891 TGCGCCGGTCAGCGT CGGCAGCGCCGGGATCGGC TTT GCC-ATTCTGACGCTGCTG TTGCTCGCCGTCATC RPE_0657 726840 - 728027 + | hypothetical protein RPE_0658 729056 - 728031 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 670 728130 - 728115 - G 74 -2.4 -4.8048 | overlap 728116 728118 728119 GGTGGAGAGGAAAAA CCAGCG CCAG CGCCGC ATCCAGAGCGCGGTC TERM 671 728973 - 728952 - G 78 -10.1 -4.07568 | gap 1, overlap 728919 GTTGCCGGCCGAAAA CCGCGC-CGC GGT GCGGGCGCAG AGCCGCTGGATCGCG RPE_0659 729859 - 729053 - | hypothetical protein TERM 672 729455 - 729429 - G 93 -10.8 -4.38712 | GCGACGCCGAGAAAA TCCTGCCACCGC AGC GCGTCAGCAGGA AACCGCGCGGCGACG RPE_0660 730014 - 730994 + | hypothetical protein RPE_0661 730998 - 732023 + | hypothetical protein RPE_0662 732183 - 732677 + | GCN5-related N-acetyltransferase TERM 673 732855 - 732818 - g 73 -14 -3.21099 | opp_overlap 732843 732844 TTGTCCGATGACGAA CGCGCCGCGATTGCCC GCTCGA AGGCGGCCGCGGCGCG CGGCGATTTCGCGAC RPE_0663 732686 - 732913 + | hypothetical protein RPE_0664 734829 - 732922 - | lipid ABC transporter ATPase/inner membrane protein TERM 674 733445 - 733389 - G 72 -13.7 -3.01712 | gap 2, overlap 733397 CCGTGGTCGCGAAGA CCACCGAATCCTGCGGCACCAGCGCGA TCCGT TCGCGCAGTCGCTGC-GGA-TCGGCGG TGTGGATGGCGGTGC TERM 675 734408 - 734387 - G 70 -10.9 -3.53091 | gap 1 ACGTCGTGGCGCAAA TCGGCGA-CG ATG CGCTCGCCGA TCGTCATCACCAGGT rpmE 734998 - 735219 + | 50S ribosomal protein L31 TERM 676 735265 - 735280 + T 100 -11.8 -5.77571 | opp_overlap 735265 GGGCTGCGGTGAAAA CGCCCC CGAC GGGGCG TTTTTCTTTTTTAAT TERM 677 735280 - 735265 - T 83 -11.8 -4.07568 | opp_overlap 735265 GGGCTGCGGTGAAAA CGCCCC CGAC GGGGCG TTTTTCTTTTTTAAT RPE_0666 735823 - 735308 - | hypothetical protein TERM 678 736000 - 735979 - R 100 -11.5 -5.44119 | opp_overlap 735981, overlap 735981 GTGACGCCAAAAAAA GAGCCGCCG TTGC CGGCGGCTT TGAAGTTGATAACAG TERM 679 735981 - 735998 + r 81 -14.1 -3.67976 | opp_overlap 735981 735979 GACGCCAAAAAAAGA GCCGCCG TTGC CGGCGGC TTTGAAGTTGATAAC TERM 680 735998 - 735981 - R 100 -14.1 -4.36089 | opp_overlap 735981, overlap 735979 GACGCCAAAAAAAGA GCCGCCG TTGC CGGCGGC TTTGAAGTTGATAAC RPE_0667 736408 - 736211 - | hypothetical protein RPE_0668 736512 - 737510 + | alcohol dehydrogenase TERM 681 738875 - 738900 + G 71 -14.7 -2.64243 | gap 1 GATGCAGCACGCCTT TGCCGG-CGGCG GCG CGCCGACCGGCG TGGTGTCCGATGTCG TERM 682 740556 - 740568 + G 78 -10.5 -4.07568 | CCGATGGACGCCGAC GCCGC GAT GCGGC TTTTGACCGAAACGC RPE_0669 737727 - 740603 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) RPE_0670 741233 - 740646 - | PadR-like family transcriptional regulator TERM 683 741165 - 741144 - G 79 -4.3 -4.82901 | opp_overlap 741146, overlap 741146 GGCCTTCCAGAAAAA GCCGATCGA GGAA TCGAACGTC TTGGCGAGTTCATAG RPE_0671 741369 - 741794 + | hypothetical protein TERM 684 742011 - 742037 + G 72 -5.8 -4.36914 | gap 1, overlap 742012 TCCCGGGCTTTAGTG ACGCCTC-CGC CGATGT GCGCGAGGCGA TTTTGTCGGAAGCGG TERM 685 742786 - 742762 - g 71 -2.7 -4.63932 | opp_overlap 742768, overlap 742765 742767 GATCGGCGAAGAAAA CAAGGGCATGC AGG GCATGTTCGTG ATGATGAACGAGGCC TERM 686 742829 - 742795 - g 84 -17 -3.21099 | GTTCGTGATGATGAA CGAGGCCCGGCTCGGC GTC GCCGTGCAGGGTCTCG CGCAGTCCGAAGTGG RPE_0672 741917 - 743707 + | acyl-CoA dehydrogenase domain-containing protein TERM 687 744044 - 744007 - g 70 -10.5 -3.75598 | overlap 744008 744017 GAAGGAACGCAACAA CCTCAAGGAAGACGTCG TCGA CGACGTCATCCTCGGCG TGGTCGATCCGGTCG TERM 688 744526 - 744570 + G 74 -7.7 -4.26903 | GACGATGCAGTCGCT CGGCCAGTTGCAGCCGTCG TTTGCGC CGATGGCGGCGATGGGCGG TTTTGATGCGGTGGC RPE_0673 743876 - 745084 + | acetyl-CoA acetyltransferase TERM 689 745262 - 745232 - f 74 -14 -2.9294 | overlap 745236 745239 745240 CACACGATCGAGACA CCAACAACCGCCGC GCC GCAACGGCTGCTGG CATCGAAGGAGCTAA TERM 690 745656 - 745612 - g 87 -14.9 -3.76373 | opp_overlap 745607 745606, overlap 745615 TGCGCAAGATCGAAA CCAGCGGCAAGCCGTGGGTCG CCG CGATCAACGGCCTGGCGCTCG GCGGCGGTTTTGAAG TERM 691 745653 - 745615 - g 74 -15.2 -2.974 | opp_overlap 745607 745606, overlap 745612 GCAAGATCGAAACCA GCGGCAAGCCGTGGGTCG CCG CGATCAACGGCCTGGCGC TCGGCGGCGGTTTTG RPE_0674 745281 - 747497 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein TERM 692 747657 - 747612 - T 81 -15.4 -3.03124 | gap 1 TCTGACTTGCGAAGA CGCCCCCTCACCCCGACCCTC TCCCC GCAAG-CGGGGCGAGGGAGCG CGCCGCCGGTGCGGC TERM 693 747706 - 747738 + T 100 -25.1 -2.87211 | opp_overlap 747711, overlap 747711 CATGCTTATGAATGT GAAAAGGCCGGATCG TCG CGATCCGGCCTTTTC TGTCTCGAACAAACT TERM 694 747711 - 747733 + T 100 -19.2 -4.60797 | opp_overlap 747711, overlap 747706 TTATGAATGTGAAAA GGCCGGATCG TCG CGATCCGGCC TTTTCTGTCTCGAAC TERM 695 747733 - 747711 - T 100 -19.2 -4.20696 | opp_overlap 747711 747706 TTATGAATGTGAAAA GGCCGGATCG TCG CGATCCGGCC TTTTCTGTCTCGAAC TERM 696 747804 - 747784 - T 71 -11.2 -3.40788 | opp_overlap 747780 747776 747766 AGCGAAGCGAAGCAA TCCAGTGC GCCGT GCACTGGA CTCTGGATTGCTTCG RPE_0675 748480 - 747866 - | glutathione S-transferase TERM 697 748523 - 748504 - H 85 -2.8 -5.27335 | gap 1, overlap 748507 CTCCCGAAAGAAAAA GCACGTTTC CTC GAACCG-GC AGTAAATGCAATTGC TERM 698 749006 - 748974 - g 79 -7 -4.65895 | gap 1, overlap 748976 TGCGCGATCGAAAAA CACGTCGGC-TCGAA ATTG TCCGACGCCGACGCC GCCAAACTCTGTGCC TERM 699 749004 - 748976 - g 81 -11.8 -3.94812 | gap 1, overlap 748974 CGCGATCGAAAAACA CGTCGGC-TCGAA ATTG TCCGACGCCGACG CCGCCAAACTCTGTG RPE_0676 748593 - 749087 + | MarR family transcriptional regulator TERM 700 750184 - 750200 + G 70 -11.5 -3.35996 | opp_overlap 750152, overlap 750178 TGCCGTGGGGCCGGC TGCCGGC GCT GCCGGCG TTCTGGGTCGGGCTG RPE_0677 749187 - 750557 + | glutamate--cysteine ligase TERM 701 751006 - 750992 - g 81 -8.5 -4.56775 | ATGCTGGCTGAAAAA CGCGG TGCCG CCGCG GGTGGAAAACCGCTG RPE_0678 750711 - 751298 + | hypothetical protein TERM 702 751301 - 751313 + F 74 -10.5 -3.80733 | CGTGGTGCGGTAGCA CGCGC GGG GCGCG TTCTTCTCCCCTCCC TERM 703 751738 - 751760 + G 72 -13.4 -3.08813 | opp_overlap 751735 751734 751738 CCCATCCACAAGCGA TCGCTGCGCC GCT GGCGGAGCGA TGTCTTGCGGTACGC TERM 704 752408 - 752394 - g 71 -9.2 -3.8591 | CTCTACAACGAAGAA CGCCCG CAT CAGGCG CTGGGCAACGATACT TERM 705 752741 - 752685 - g 100 -24.8 -3.84451 | gap 2, overlap 752686 TTGCGCAAAGCCAAA CGAGGCTGTGGA-C-TTGTGGACAACGC TGC GCGTTGCCCACAAGGGCCCACAGCCTCA ACAGCAGACGCCGAA TERM 706 752740 - 752686 - g 100 -26.1 -2.90349 | gap 2, overlap 752685 TGCGCAAAGCCAAAC GAGGCTGTGGA-C-TTGTGGACAACGC TGC GCGTTGCCCACAAGGGCCCACAGCCTC AACAGCAGACGCCGA RPE_0679 751533 - 752945 + | integrase catalytic subunit TERM 707 752975 - 752997 + F 83 -6.9 -4.93877 | gap 1, opp_overlap 752965 GAAAACCGAGGGGGA CGG-AGCGCC GCGC GGCGCAACCG TTTTGTTTCGTGGCG RPE_0680 753450 - 754865 + | hypothetical protein TERM 708 755538 - 755558 + T 73 -12.6 -3.23216 | CAGCACCATCGTTCA TTGCCGGG CTTGA CCCGGCAA TTCATCCTCGTCGGG RPE_0681 756006 - 755665 - | hypothetical protein TERM 709 756117 - 756173 + r 100 -24.6 -2.71731 | gap 2, overlap 756124 756133 756168 GAGGGTGTCGGCGTG CCCCGGAT--GCAGTGCAGCGCGCCGCG CTT TGCGGCGTGGTGCGCTGCTGATCCGGGG TCGTTACGAAGTCAG gltD 757817 - 756363 - | glutamate synthase subunit beta TERM 710 757948 - 757994 + r 100 -18.6 -3.84389 | overlap 757949 CCGTGCCCTTGCCGC TGTCACCCTTCGAGGCCCGCGC TTT GCGCGGGCGCCTCAGGGTGACG TTCTCTTGTTAGCTC TERM 711 757949 - 757993 + r 93 -19.9 -2.8991 | overlap 757948 CGTGCCCTTGCCGCT GTCACCCTTCGAGGCCCGCGC TTT GCGCGGGCGCCTCAGGGTGAC GTTCTCTTGTTAGCT RPE_0683 762833 - 758064 - | glutamate synthase ferredoxin subunit TERM 712 758179 - 758216 + g 70 -11.3 -3.59979 | gap 1 AGAAAATCTTTCCAG TTCGCCAGGATCTCGGCG GCG CGCTTCGATCC-GGCGAA TTTGGCGTGACGCGA TERM 713 758646 - 758664 + g 72 -8.8 -4.07568 | overlap 758647 GACGATGATCGACTG CTCCGGCA CGA TGCCGGAA TTTTGCGGCGGGCGG TERM 714 763662 - 763683 + G 78 -13.7 -3.55622 | ACCTCGCAGCGCCGC TGTGGCGCC GCCC GGCGCCGCA TTTCCGCGAATTCGG RPE_0684 763247 - 763948 + | hypothetical protein TERM 715 763965 - 763984 + T 86 -16.4 -3.19668 | opp_overlap 763965 ATAGGCCGACAAAAA CGCCCCGG TCAC CCGGGGCG TTGCGTTGCGTAGTG TERM 716 763984 - 763965 - T 100 -16.4 -4.84761 | opp_overlap 763965 ATAGGCCGACAAAAA CGCCCCGG TCAC CCGGGGCG TTGCGTTGCGTAGTG RPE_0685 764522 - 764052 - | heat shock protein Hsp20 TERM 717 764246 - 764227 - G 70 -10.6 -3.57144 | opp_overlap 764238, overlap 764228 TCGGCGAGCTGGAAA GCGCGCTC GAAG GCGCGCGC GGCGATGCCGCGATA RPE_0686 764735 - 765682 + | alpha/beta hydrolase fold TERM 718 766147 - 766103 - g 70 -10.7 -3.61398 | gap 2 CGCGCGCGGCAAGAA GGCCGAGCAGGCGGTGCTGGA GCAAT TCCAGC-CCGCC-GCCGGGGC GATGAGCTTCACCCG RPE_0687 765855 - 766730 + | UTP-glucose-1-phosphate uridylyltransferase RPE_0688 768283 - 766763 - | diguanylate cyclase RPE_0689 768480 - 768746 + | hypothetical protein RPE_0690 768857 - 769267 + | ISGsu3, transposase RPE_0691 769677 - 770417 + | hypothetical protein TERM 719 771441 - 771400 - g 72 -13.8 -3.03159 | gap 3, overlap 771382 GCAAGCCGCGCAAGA CCGCGATCGACCGGCG-GACG CTG CGTCACGCCGG-CTA-CGCGG TCAGCCAACGCTGCC TERM 720 771608 - 771594 - g 70 -6.4 -4.25283 | ATCCGCCTACCAAAA CTGCTG GGG CAACAG CGTGAGGCTCCCCAC RPE_0693 771327 - 771725 + | hypothetical protein RPE_0694 772741 - 771722 - | hypothetical protein TERM 721 772615 - 772604 - G 70 -3.6 -4.56597 | overlap 772606 CGCTTCGGTCAAAAA CGGC TTCA GCCA AGCGCCCAGCGATGG RPE_0695 774535 - 772847 - | hypothetical protein RPE_0696 774749 - 775762 + | KpsF/GutQ family protein TERM 722 775970 - 775918 - T 85 -14.9 -3.66178 | gap 2, overlap 775919 GTGCGGAATCTGAAA CGGTCCCGGGTCTGCGAAGCGGCAT GAAGA ATGCCGCATCGC-G-CCCGGGACAC CAGGATTCGCTAAAT TERM 723 775969 - 775919 - T 86 -18.4 -2.79492 | gap 2, overlap 775918 TGCGGAATCTGAAAC GGTCCCGGGTCTGCGAAGCGGCAT GAAGA ATGCCGCATCGC-G-CCCGGGACA CCAGGATTCGCTAAA RPE_0697 777350 - 775980 - | major facilitator transporter TERM 724 777461 - 777421 - R 78 -11.8 -3.79906 | gap 1, opp_overlap 777436 777439 777442 TCAGCGGGAGAAGAA GCCCGGCA-CCGACGCCGA CGGA CCGACATCGGCCGGCGGGC GCGGCCCGCGCGGCC RPE_0698 779058 - 777406 - | hypothetical protein TERM 725 777436 - 777489 + g 80 -16 -3.28712 | gap 3, opp_overlap 777421, overlap 777439 777442 GCCCGGCACCGACGC CGACGGACCGACATCGGCCG-GCGGGC GCG GCCCGCGCGGCCGTTG-CGG-CTGCTG TTGTGGCGGGGGAGG TERM 726 777439 - 777486 + g 87 -18.5 -2.52623 | gap 3, opp_overlap 777421, overlap 777436 777442 CGGCACCGACGCCGA CGGACCGACATCGGCCG-GCGGGC GCG GCCCGCGCGGCCGTTG-CGG-CTG CTGTTGTGGCGGGGG TERM 727 777442 - 777484 + g 85 -17.7 -2.80074 | opp_overlap 777421, overlap 777439 777436 CACCGACGCCGACGG ACCGACATCGGCCG-GCGGGC GCG GCCCGCGCGGCCGTTG-CGGC TGCTGTTGTGGCGGG TERM 728 777546 - 777529 - G 70 -8.3 -4.0098 | CTGGAAGCCAAAGAA CCCGCCG AGAC CGGAGGG CGGCGGTGCCGGCGC TERM 729 777634 - 777670 + g 72 -13 -3.13522 | gap 2, overlap 777633 ATCGGCCGTGCCCTC GG-GCGAGGCGGCG-GCC ACC GGCACGTCGCCTCTCGCC TGTTCCTGGCCGACT TERM 730 778929 - 778873 - G 74 -15.1 -3.05715 | gap 3, opp_overlap 778880 778882 AATCTCGCCACCGAA CCATCCGCCGCCGCCGCGCTGCTGTTGC TGAG GCACC-GCGGCG-GGCGGCCGCGG-CGG CCCGCCAAAACCGAA TERM 731 778966 - 778948 - G 86 -6.7 -4.87318 | gap 1 GCCAAAACCGAAAAA CTGCGCCG AGGC CGGCG-AG ACGATGCCGAACAAC RPE_0699 779784 - 779209 - | filamentation induced by cAMP protein Fic RPE_0700 780011 - 779796 - | hypothetical protein TERM 732 779956 - 779977 + g 70 -2.2 -4.63218 | overlap 779932 CCGATGACGAACTGT CCGGTCCT TTGGGC ACGATCGG TTTTCTTCGGAGAAG RPE_0701 781453 - 780050 - | lytic murein transglycosylase RPE_0702 781573 - 782202 + | lysine exporter protein LysE/YggA RPE_0703 782955 - 782206 - | hypothetical protein RPE_0704 783434 - 783003 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 733 783570 - 783549 - g 70 -8.7 -4.0162 | gap 1 GTCCGACACCACAAA GACGG-CGCT GAT AGCGGCCGCC CGACAGGCATTCATC RPE_0705 783499 - 784089 + | TetR family transcriptional regulator RPE_0706 784888 - 784109 - | histidinol-phosphate phosphatase, putative, inositol monophosphatase TERM 734 785329 - 785354 + r 100 -20.5 -5.56264 | TTCCTCCCTAGACTT GGGCCGCTTGC TTTT GCAAGCGGCCC TTTTTTCTATTTGGG RPE_0707 786324 - 785437 - | N-formylglutamate amidohydrolase TERM 735 785792 - 785759 - G 76 -15.3 -2.82516 | TCGCCGATCACCACA TCGGGCCGCCGCG GCTCGTCG CGCGACAGCCCGA CCGACGGCATCGAAT RPE_0708 786618 - 786977 + | response regulator receiver protein TERM 736 787355 - 787322 - g 77 -13.1 -3.5594 | gap 1, overlap 787323 AACGCATCCTGGAAA CCGCCACCTCGCGGCG CTT CGCCGCGACGCGG-GA CTGGCTCGACCGGAT RPE_0709 787291 - 788079 + | hypothetical protein TERM 737 788233 - 788188 - T 90 -17.8 -3.06183 | gap 1, opp_overlap 788188 788193 788197, overlap 788193 788197 GTCATTGCGAGCGAA GCGAAGCAATCCA-GAGCCGC GCACT GTGACTCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 738 788188 - 788233 + T 90 -18.5 -3.06183 | gap 1, opp_overlap 788188 788193 788197, overlap 788193 788197 GTCATTGCGAGCGAA GCGAAGCAATCCA-GAGCCGCG CAC TGTGACTCCTGGATTGCTTCGC TTCGCTCGCAATGAC RPE_0710 789048 - 788449 - | TrpR binding protein WrbA RPE_0711 789907 - 789209 - | pirin domain-containing protein RPE_0712 790025 - 790948 + | LysR family transcriptional regulator RPE_0713 791786 - 790935 - | hypothetical protein TERM 739 791551 - 791524 - G 73 -4 -4.59773 | gap 1, overlap 791525 791529 TCCGACTTCGAAAAA TCGAACCGCGGCG GCA CGCCG-GAATCGC CGGGGCTGCGCCAAT RPE_0714 791912 - 792541 + | hypothetical protein TERM 740 792892 - 792855 - f 95 -10.7 -4.66833 | gap 1 CCCTAACGCGAAAAA GTCGAATTCAGAGGCAGA CGG CCCGCG-CTGAATTCGAC TGACGGTTTGAAGAC TERM 741 793536 - 793552 + G 71 -9.3 -3.86897 | overlap 793537 GCGCCTGCGATGCCG GCGGCGC CCA GCGCCGA TTTCTCCGGGCTCGA RPE_0715 792963 - 796250 + | Sel1 domain-containing protein TERM 742 796277 - 796314 + F 100 -11.9 -4.41616 | opp_overlap 796275 796267 796278 796280 796300 796301, overlap 796278 ATCAACGTGAACATG ACATGACCGGCGGCG CCCAAAAA CGCCGCCGGTCGCGG TTTCTTTAACGCCGT TERM 743 796278 - 796313 + F 83 -15.4 -3.24488 | opp_overlap 796278 796275 796267 796280 796300 796301, overlap 796277 TCAACGTGAACATGA CATGACCGGCGGCG CCCAAAAA CGCCGCCGGTCGCG GTTTCTTTAACGCCG TERM 744 796313 - 796278 - f 81 -16.8 -2.76046 | opp_overlap 796277 796278, overlap 796275 796267 796280 796300 796301 TCAACGTGAACATGA CATGACCGGCGGCGCC CAAA AACGCCGCCGGTCGCG GTTTCTTTAACGCCG TERM 745 796311 - 796280 - f 79 -15.8 -2.92293 | opp_overlap 796278 796277, overlap 796278 796275 796267 796300 796301 AACGTGAACATGACA TGACCGGCGGCGCC CAAA AACGCCGCCGGTCG CGGTTTCTTTAACGC TERM 746 796740 - 796769 + G 79 -16.5 -2.88861 | overlap 796732 796745 CTGATGCGCGAGCTC GGACAGCTCGATC TGAT GATCGCGCTGTCC TATGTGGCACTGCTG RPE_0716 796419 - 797345 + | hypothetical protein RPE_0717 797342 - 798133 + | hypothetical protein TERM 747 798248 - 798217 - T 71 -10.9 -3.44848 | gap 1, overlap 798215 TTGCCGCAGCAAAGA CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG AAGAATCAGCTGTTG RPE_0718 799031 - 798270 - | carbonate dehydratase RPE_0719 799753 - 799127 - | putative phage repressor TERM 748 799511 - 799466 - G 70 -11.8 -3.35597 | gap 2, overlap 799448 799464 GCCATCGTCGAAATA GCCGCCGGCGCCGGCCTGCGCG AAGC CGAGCAG-C-GGCACCGACTGC ACCGGCCGGGCGCGG TERM 749 799900 - 799874 - H 86 -6.6 -5.00616 | gap 1 CGCTTTGCCAAAAAA GCCGCGCTTGA AGTGCG CCAAGC-CGGC CGATACGGTCAGGCG TERM 750 800266 - 800312 + G 73 -10.7 -3.62518 | gap 2, opp_overlap 800264 800261 800260, overlap 800264 800267 800309 CGGTCGAAATCGACG C-GCTCGGCGCCGCGC-TGCGCT GGG AGCGCTCGCGCGACGACGCGCTG TTTCCGCATCTTTAC TERM 751 800267 - 800310 + G 77 -14.4 -3.38603 | gap 1, opp_overlap 800264 800261 800260, overlap 800264 800266 800309 GGTCGAAATCGACGC GCTCGGCGCCGCGC-TGCGCT GGG AGCGCTCGCGCGACGACGCGC TGTTTCCGCATCTTT RPE_0720 800073 - 800417 + | hypothetical protein TERM 752 800974 - 800940 - g 70 -12.9 -3.01712 | gap 2 TCTCCTCGCCGAACA CGCCG-GGCCTGC-GCA ATC TGCAGCAGGCGGCGGCG CTGGACGACCTGCTC TERM 753 801482 - 801459 - g 74 -12.4 -3.5393 | ACCAGCTCTCCGAAA TCGTCGGCGC CGAC GCGCCGATGA TCACCGCCGAAGACT RPE_0721 800414 - 801508 + | dihydroorotate dehydrogenase 2 TERM 754 801791 - 801740 - T 74 -10 -3.76224 | gap 1, opp_overlap 801740 801741, overlap 801741 801767 CCGGCAGTTACCAAA GCCGTCATTCCGGG-GCGCCCGAGC ATA GCTCGCGCGAACCCGGAATCTCGAG ATTGTTGCCAAGAGA TERM 755 801790 - 801741 - T 74 -13.5 -2.8552 | gap 1, opp_overlap 801741 801740, overlap 801740 801767 CGGCAGTTACCAAAG CCGTCATTCCGGG-GCGCCCGAGC ATA GCTCGCGCGAACCCGGAATCTCGA GATTGTTGCCAAGAG TERM 756 801849 - 801809 - T 81 -15.4 -3.09273 | gap 1, overlap 801767 TGTTGCCAAGAGAGA TTCCGGGTTCGCCCGCCAC TGTC GCGGCGCGCGC-CCCGGAA TGACGAAGACCTACA RPE_0722 802594 - 801860 - | beta-lactamase domain-containing protein RPE_0723 803976 - 802636 - | MATE efflux family protein TERM 757 802911 - 802861 - G 70 -10.5 -3.70902 | gap 2 CCCGTCATAGGCAAA CGCGAACACGCCGACGATCGGTGCC AAG GCCACC-AGCATCAGCATGT-CGCG CGCGGCGGCGCGAAC TERM 758 803230 - 803209 - G 100 -5 -5.61881 | overlap 803211 803221 GGTGAAAAACAAAAA CGCCGCGA TCAATG CCGCGGTG CGGATCATGATGTCG RPE_0724 804295 - 803996 - | hypothetical protein RPE_0725 806295 - 804532 - | ATP-dependent DNA ligase RPE_0726 807332 - 806292 - | putative mRNA 3-end processing factor RPE_0727 807404 - 808330 + | methyltransferase type 11 TERM 759 808367 - 808386 + T 100 -16.4 -4.3208 | opp_overlap 808367 TAGCACAAACAAAAA CCCCGGCC GCGA GGCCGGGG TTTTGCATTCTCGAA TERM 760 808386 - 808367 - T 100 -16.4 -5.40464 | opp_overlap 808367 TAGCACAAACAAAAA CCCCGGCC GCGA GGCCGGGG TTTTGCATTCTCGAA RPE_0728 809754 - 808414 - | porin TERM 761 809038 - 809011 - G 70 -11.3 -3.58726 | gap 1 GCCGCCGAGATAGAA GCCGGC-CCAGT TGGCC ACCGGCGCCGGC GCATAGATGCCGGTG TERM 762 810067 - 810046 - H 76 -8.7 -4.20868 | gap 1, overlap 810064 CGGCCAAAATAAGAA CCGGTCGCGC CAA GCG-AACCGG GCATCCAGGGAGAAA TERM 763 810119 - 810139 + G 72 -14.7 -2.73875 | opp_overlap 810119, overlap 810116 GCTCCGTCCTGAAAA CCGCGGCGA CGC TCGCTGCGG TGATGTTCGCGGCCA TERM 764 810139 - 810119 - g 83 -12.5 -4.07568 | opp_overlap 810119 810116 GCTCCGTCCTGAAAA CCGCGGCGA CGC TCGCTGCGG TGATGTTCGCGGCCA TERM 765 810708 - 810684 - g 70 -11.3 -3.61398 | GGGTCCGTTCAAGAA GGTGCTGGCGG ATG CCGGCGGCACC GCCAAGGTGGTGGCG RPE_0729 810088 - 811308 + | extracellular ligand-binding receptor TERM 766 811401 - 811459 + F 79 -15.9 -2.90078 | gap 2, opp_overlap 811402, overlap 811402 GATTGTGCGGCAGAA AGCGGGGTCCCGGGTCTGCGGAGCAGCGT TTC ACCCTGCACCGC-G-CCCGGGACACGGCA GTTTAATGTCGGGTG TERM 767 811458 - 811402 - f 100 -19.4 -3.85817 | gap 2, opp_overlap 811401 811402 ATTGTGCGGCAGAAA GCGGGGTCCCGGGTCTGCGGAGCAGCGT TTC ACCCTGCACCGC-G-CCCGGGACACGGC AGTTTAATGTCGGGT TERM 768 811623 - 811585 - f 70 -7.4 -4.10161 | gap 2, opp_overlap 811590 GACCATTTTGCAAAA TGGTTCGCCGCGCGCGGC TGGGC GCCGCGCG-GGC-ATCAA TTGGCGCTGCTCGAG TERM 769 811845 - 811900 + G 71 -15.2 -2.59564 | gap 1, overlap 811844 811847 GAGGCCGATGCCCCC CACCCCCGACCCCTCCCCACCACGCGC TGC GCGCGCGG-GGGGAGGGGAGAAGGCTG CTTCTGAACTGACCG TERM 770 812152 - 812175 + G 70 -3.8 -4.45168 | gap 1, overlap 812139 812160 GAGCAACTGGCGCTG CTGCT-GTCGT CCG ACGACGGGCCG TTTCTGTTTTCAACG RPE_0730 811837 - 814251 + | DEAD/DEAH box helicase domain-containing protein RPE_0731 814254 - 814967 + | hypothetical protein TERM 771 815096 - 815048 - T 83 -15.2 -3.14229 | gap 1, overlap 815021 815046 815050 815052 AGATTGTTAGCAAGA GAGATTCCGGGTTCGCCCGCCGC TATC GCGGCGTGCGC-CCCGGAATGAC GACCTTAAACTGAGC TERM 772 815094 - 815050 - T 86 -16.4 -3.13073 | gap 1, overlap 815021 815048 815046 815052 ATTGTTAGCAAGAGA GATTCCGGGTTCGCCCGCCGC TATC GCGGCGTGCGC-CCCGGAATG ACGACCTTAAACTGA TERM 773 815092 - 815052 - T 93 -19 -3.12449 | gap 1, overlap 815021 815050 815048 815046 TGTTAGCAAGAGAGA TTCCGGGTTCGCCCGCCGC TATC GCGGCGTGCGC-CCCGGAA TGACGACCTTAAACT RPE_0732 816059 - 815142 - | LysR family transcriptional regulator TERM 774 815690 - 815673 - G 72 -8.3 -4.07568 | overlap 815674 CCGCGCGCGCGAAAA CCGCGCC AGCA GGCGCGT CAGCCGATAGGCGGC RPE_0733 816122 - 817048 + | hypothetical protein RPE_0734 817058 - 817843 + | hypothetical protein TERM 775 817876 - 817915 + T 73 -10.7 -3.60475 | gap 1 TCGGAGCGCGCGGAG TGGCG-CATGGCGGCACG GGTCG CGTGCTGCCAAGTCACCA TTTCAAGTCACCATT RPE_0735 818230 - 817964 - | hypothetical protein TERM 776 818135 - 818120 - G 83 -9 -4.3739 | GACGTTGCGATAAAA CCCGAT GATG ATCGGG CTGCAATACAGCAGC TERM 777 818485 - 818525 + r 73 -13.2 -3.14931 | gap 1, overlap 818487 AGGATAGGTGCTGGA GTACGGC-GCGCGCCCG CATTGCCT CGGGCGCGCCGCCGGTC TTGCTACGCGCTACG TERM 778 818487 - 818523 + r 80 -14.4 -3.1372 | gap 1, overlap 818485 GATAGGTGCTGGAGT ACGGC-GCGCGCCCG CATTGCCT CGGGCGCGCCGCCGG TCTTGCTACGCGCTA lysK 820169 - 818529 - | lysyl-tRNA synthetase RPE_0737 821134 - 820211 - | extracellular solute-binding protein TERM 779 822916 - 822971 + G 71 -14.6 -2.64616 | gap 1, overlap 822932 822934 822935 CTATGTTGGAACTGC GGCGGTGGCGCT-GATCGGCCTGGCAC GCC GTGGCAGGCTGGGCGAGAGCCGCGGCC TGCTGTGGATGCCAG TERM 780 822935 - 822986 + G 76 -14.5 -3.12142 | overlap 822916 822934 822932 GTGGCGCTGATCGGC CTGGCACGCCGTGGCAGGCTG-GGC GAGA GCCGCGGCCTGCTGTGGA-TGCCAG TGTATTGGGTCTACC RPE_0738 821213 - 823153 + | glycosyl transferase family protein RPE_0739 823730 - 823137 - | electron transport protein SCO1/SenC RPE_0740 824321 - 823863 - | hypothetical protein RPE_0741 824859 - 825233 + | hypothetical protein TERM 781 825334 - 825385 + F 100 -19.5 -4.05033 | opp_overlap 825341, overlap 825336 825339 CGACGACCAGCCCAT TGACAGACCTGC-CCCGCCGGTGCG ACGC CGCAGCGGCGGGCGCTGGTCTG-CG TTTGTCTGACGTCAA TERM 782 825336 - 825384 + F 93 -21 -3.02698 | gap 1, opp_overlap 825341, overlap 825334 825339 ACGACCAGCCCATTG ACAGACCTGC-CCCGCCGGTGCG ACGC CGCAGCGGCGGGCGCTGGTCTGC GTTTGTCTGACGTCA TERM 783 825339 - 825381 + F 100 -21.3 -2.73529 | gap 1, opp_overlap 825341, overlap 825336 825334 ACCAGCCCATTGACA GACCTGC-CCCGCCGGTGCG ACGC CGCAGCGGCGGGCGCTGGTC TGCGTTTGTCTGACG TERM 784 825379 - 825341 - f 90 -18.1 -2.91582 | gap 1, opp_overlap 825339 825336 825334 CAGCCCATTGACAGA CCTGC-CCCGCCGGTGCG ACGC CGCAGCGGCGGGCGCTGG TCTGCGTTTGTCTGA TERM 785 826483 - 826461 - g 75 -4.8 -4.63218 | CTCCGCGGAAGAAAA CGTCATCATC CTG GACGACTACG CCAACACCTCGTCGG RPE_0742 825502 - 826617 + | 3-oxoacyl-(acyl carrier protein) synthase III RPE_0743 827208 - 826639 - | hypothetical protein TERM 786 826876 - 826855 - G 83 -13.7 -3.85698 | gap 1, overlap 826856 CGCGGCGCCGACAAA GC-CGCCGGC GAA GCCGGCGAGC GCGTTGCGGATGGTC TERM 787 826874 - 826856 - G 71 -13.8 -2.91276 | overlap 826855 GCGGCGCCGACAAAG CCGCCGGC GAA GCCGGCGA GCGCGTTGCGGATGG RPE_0744 827420 - 828322 + | LysR family transcriptional regulator TERM 788 829019 - 829042 + G 75 -9.4 -4.07885 | TCCTATGAGGGCGGC GCCCGGATCG ACGG CGCGCCGGGC TTTTCGGCGCCGATC TERM 789 829369 - 829380 + G 70 -2.2 -4.65078 | CGCCGGCGGCAGCCT CTGT ACCC GCAG TTTTATTCCGCATGT RPE_0745 828578 - 829693 + | hypothetical protein RPE_0746 829690 - 830718 + | amidohydrolase 2 RPE_0747 830721 - 831416 + | hypothetical protein TERM 790 831699 - 831715 + G 72 -5.8 -4.39696 | overlap 831695 831700 CGTGTGCCGGCGCAA TCAGGC CCGGC GCCTGG TTTCTTGATTTCAAC TERM 791 832178 - 832222 + G 81 -12.1 -3.86015 | gap 2, opp_overlap 832145 ACGGTGCGCGAGGCC GGCCTGACGCCGTGGTCGGCG GAGGG CACCG-CCGCG-CGCCAGGCC TTTGTCGCCGACCTC RPE_0748 831422 - 832351 + | putative dehydrogenase RPE_0749 832578 - 833492 + | amidohydrolase 2 RPE_0750 833722 - 834111 + | protocatechuate 4,5-dioxygenase subunit alpha TERM 792 834877 - 834831 - g 86 -18 -3.06796 | opp_overlap 834858 TCGGAGGGTATCGAA CTGGTGATGTGGCTGATCGCGC GCG GCGCGATGAGCGACATCGCCGG CGGCCCCGCGCCCAA RPE_0751 834111 - 834965 + | protocatechuate 4,5-dioxygenase subunit beta TERM 793 835059 - 835021 - g 78 -10.3 -4.07568 | opp_overlap 835041, overlap 835024 GCGTTCGGCCTAAAA CATCTCGACGGCATCAA GAACA TCGACGGCGTCGAGGTG GTGTCGCTGATCGGC RPE_0752 834967 - 835923 + | oxidoreductase domain-containing protein RPE_0753 836020 - 836400 + | hypothetical protein TERM 794 836460 - 836499 + F 91 -9.1 -4.64861 | gap 1, opp_overlap 836455, overlap 836461 GATGACAGCATGATG ACGGCGCCGG-CCGCGGC ACGAC GCCGCTGTCCGACGTCGG TTTATTTTAACGGCC TERM 795 836461 - 836498 + F 74 -12.6 -3.38435 | gap 1, opp_overlap 836455, overlap 836460 ATGACAGCATGATGA CGGCGCCGG-CCGCGGC ACGAC GCCGCTGTCCGACGTCG GTTTATTTTAACGGC RPE_0754 836544 - 836945 + | phosphoribosyl-ATP pyrophosphohydrolase RPE_0755 836970 - 837587 + | DedA family protein RPE_0756 837643 - 838296 + | hypothetical protein RPE_0757 838448 - 839416 + | 2-nitropropane dioxygenase, NPD TERM 796 839959 - 839975 + G 84 -9.3 -4.56597 | overlap 839960 TCGCAGGTGATGCGC GCCGCGG TGG CCGCGGA TTTTTCCAACGCCAC TERM 797 839960 - 839974 + G 71 -12.8 -3.33744 | overlap 839959 CGCAGGTGATGCGCG CCGCGG TGG CCGCGG ATTTTTCCAACGCCA RPE_0758 839425 - 840198 + | hypothetical protein RPE_0759 840314 - 840571 + | hypothetical protein TERM 798 840738 - 840718 - f 70 -11.9 -3.15249 | TACATTTGTGACGAA GATCGCGGA CGC TCCGCAATC GGGAATGGAGACCAG TERM 799 841365 - 841381 + G 75 -11.5 -3.63515 | opp_overlap 841364 841365 TGCAGCAGCTGAAAT CGGCGGC GAT GCCGCTG TTGTTCCAGCTGCGC RPE_0760 840755 - 841468 + | hypothetical protein TERM 800 842281 - 842225 - g 89 -14.5 -4.07568 | gap 3, overlap 842206 842228 842266 GGTGGTGCCGGAAAA TGACGCCG-ACCGACG-CGTCGTCGCCG TTCC CGGCGCCAACATCGTCGGTGCGGCG-CT GGAAGGCGGCGTCGG TERM 801 842279 - 842228 - g 100 -21.7 -3.08032 | gap 2, overlap 842206 842225 842266 GGTGCCGGAAAATGA CGCCG-ACCGACG-CGTCGTCGCCG TTCC CGGCGCCAACATCGTCGGTGCGGCG CTGGAAGGCGGCGTC TERM 802 842301 - 842327 + G 78 -15 -3.34013 | opp_overlap 842266 GGCGGCGTCGGCCAC CGCAGCGGCGCC ACC GGCGCGGCGGCG TTGCTTGCGGGAGTG RPE_0761 841626 - 842546 + | hypothetical protein RPE_0762 843677 - 842568 - | molybdate ABC transporter ATP-binding protein TERM 803 843341 - 843378 + g 77 -11.2 -3.81488 | CGTCGAACGCGATGT CCTGCTCGGCGGCGTG ACGCGG CGCGCCGTACAGCAGG TTCTCTTTCACCGAC RPE_0763 844360 - 843674 - | molybdate ABC transporter permease TERM 804 843757 - 843741 - G 75 -11.5 -3.68244 | opp_overlap 843744, overlap 843734 ACCACGAAGGCGAAA GCCGCCA TGC CGGCGGC GAGGATGTTGGCCTC TERM 805 844477 - 844513 + r 76 -13.8 -3.19192 | gap 1, opp_overlap 844477 844481, overlap 844481 AGGCTCCTCGATGAA GCAATCCAGGGGCTCCG TGCT CGGCGCTC-TGGATTGC TTCGCTTCGCTCGCA TERM 806 844513 - 844477 - R 70 -11.6 -3.14211 | gap 1, opp_overlap 844477 844481, overlap 844481 AGGCTCCTCGATGAA GCAATCCAGGGGCTCCG TGCT CGGCGCTC-TGGATTGC TTCGCTTCGCTCGCA RPE_0764 845325 - 844552 - | molybdenum ABC transporter, periplasmic molybdate-binding protein RPE_0765 846132 - 845341 - | ModE family transcriptional regulator TERM 807 846317 - 846303 - H 76 -5.6 -4.66535 | overlap 846305 AACGCGGAAAATAAA TGCCGC ATT GCGGAA ATATGCCTGCGCGCA TERM 808 847955 - 847930 - g 78 -14.7 -3.29461 | gap 1 CAAGGCGCGCGAGAA CGGCGACGGCGC GGT GCGCCA-CGCCG GCATCCCGGCGCTCG RPE_0766 846515 - 851584 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein RPE_0767 851581 - 854418 + | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase RPE_0768 855226 - 854576 - | triple helix repeat-containing collagen RPE_0769 855398 - 856369 + | ribokinase-like domain-containing protein RPE_0770 856573 - 857937 + | tryptophan synthase subunit beta TERM 809 857965 - 857991 + F 100 -21.6 -3.72893 | TTGACGATCTCTGAA GCGGCGGCCGGA GTT TTCGGCCGCCGC TTTCGTGCGGGCATC TERM 810 858997 - 858971 - g 70 -13.6 -3.04461 | overlap 858945 GACCTATCGCGAACA GGCGCGCTGGTC GAT GACCGGCGTGCC GCTGCCGCCGCCAAC RPE_0771 858216 - 860909 + | alpha/beta hydrolase domain-containing protein TERM 811 861210 - 861234 + T 76 -9.4 -4.04719 | opp_overlap 861210 861213, overlap 861206 861213 861216 TCAGAGACAGCTAAA TAACAGCCGA GCTAA TCGGTTGTTA TTTGTCGTCTGTGGT TERM 812 864059 - 864079 + T 73 -11.2 -3.57971 | TTCGATAGCCGGAAC TCCAAGGC CTTGC GCCTTGGA TTTGGGAATAACTCT TERM 813 865691 - 865678 - T 81 -4.5 -5.06816 | ACTGTTTAACAAAAA CACAG GGCT CTGCG AAATCGCAAGATGAC TERM 814 866880 - 866824 - T 73 -12.6 -3.19472 | gap 1, opp_overlap 866850, overlap 866826 866850 AAAGAAACCAGCGAA TAGTGAGTAGCGAATAGCGA-ATAGAA GAGA TCCTTTCTCTCTATTCGCTACTCCCTA CTCCCTACTCACTAC TERM 815 866884 - 866826 - T 89 -17.2 -3.14454 | gap 2, opp_overlap 866850, overlap 866824 866850 AGAAACCAGCGAATA GTGAGTAGCGAATAGCGAATAGAAGAGA TCCTT TCTCT-CTATTCGCTACTCCCTACTC-C CTACTCACTACTCGC TERM 816 867134 - 867091 - T 79 -16.2 -2.53894 | opp_overlap 867101, overlap 867096 867101 ACGATCACCACCAAC CAAAACAAAACGCCGCTTCC GAAA AGAAGCGGCGTTTTTTGTTG CCTATCGTTGCAACC TERM 817 867129 - 867096 - T 100 -14.7 -4.46615 | opp_overlap 867101, overlap 867091 867101 CACCACCAACCAAAA CAAAACGCCGCTTCC GAAA AGAAGCGGCGTTTTT TGTTGCCTATCGTTG TERM 818 867101 - 867124 + T 100 -13.9 -5.49234 | opp_overlap 867101 867096 867091 CCAACCAAAACAAAA CGCCGCTTC CGAAAA GAAGCGGCG TTTTTTGTTGCCTAT TERM 819 867124 - 867101 - T 100 -14.6 -5.18643 | opp_overlap 867101, overlap 867096 867091 CCAACCAAAACAAAA CGCCGCTTCC GAAA AGAAGCGGCG TTTTTTGTTGCCTAT TERM 820 867211 - 867172 - T 73 -3.5 -4.68724 | overlap 867173 867175 TCATGCAAGACAAAA TGA-TCGCACGGCGAGCCC GGCC GAGC-CGCCGCTCGAGTCG GCCACACCCAACCCG flgL 868248 - 867337 - | flagellar hook-associated protein FlgL RPE_0774 870031 - 868262 - | flagellar hook-associated protein FlgK RPE_0775 870506 - 870051 - | hypothetical protein RPE_0776 870789 - 870508 - | hypothetical protein TERM 821 870735 - 870693 - G 73 -12.7 -3.44051 | gap 1 TGCGCAGCACCAGAA GCCGACGCC-GATCGCTCGC TTTG GCGAGCGCTCCGACATTGGC CGCGATGCGCCGCAG flgE 872058 - 870793 - | flagellar hook protein FlgE RPE_0778 872743 - 872078 - | flagellar hook capping protein RPE_0779 873337 - 872996 - | hypothetical protein RPE_0780 873857 - 873453 - | flagellar protein FliS RPE_0781 875563 - 873860 - | flagellar hook-associated 2 domain-containing protein TERM 822 875615 - 875580 - R 89 -16 -3.53012 | overlap 875581 875584 CGCCTGCTCCGGAAA GGGACGGCGGCCCGGC TTCG GCCGGTCCGCCGTCAG GTCGACAGGGAGCGT TERM 823 875614 - 875581 - R 90 -19.5 -2.71712 | overlap 875580 875584 GCCTGCTCCGGAAAG GGACGGCGGCCCGGC TTCG GCCGGTCCGCCGTCA GGTCGACAGGGAGCG TERM 824 875611 - 875584 - R 90 -19.8 -2.64155 | overlap 875581 875580 TGCTCCGGAAAGGGA CGGCGGCCCGGC TTCG GCCGGTCCGCCG TCAGGTCGACAGGGA RPE_0782 876460 - 875630 - | flagellin domain-containing protein RPE_0783 877288 - 876605 - | RNA polymerase sigma factor TERM 825 877211 - 877230 + g 85 -16.4 -3.4252 | overlap 877222 CGCTTCATTCGGCAT CGCCGCCG CGAG CGGCGGCG TTGTCATCACTGCCG RPE_0784 877602 - 877856 + | hypothetical protein RPE_0785 877931 - 879355 + | hypothetical protein RPE_0786 879886 - 880443 + | hypothetical protein TERM 826 880617 - 880637 + F 72 -4.5 -4.64676 | opp_overlap 880614, overlap 880618 GATGCGCGAATACCG GCGCCGGCG CGT TGCCAGCGG TTTTGTTGGCGCTAG RPE_0787 880689 - 881207 + | hypothetical protein RPE_0788 881245 - 881628 + | LrgA family protein TERM 827 882285 - 882247 - g 70 -11 -3.53012 | gap 1, overlap 882251 CGCGCGCGTTCCAAA TCGACGCGATAGCCGGC GCCTTT GCCGGC-ATCGCGATGA GCCTGAACGCGCTGC TERM 828 882281 - 882251 - g 71 -14.8 -2.64155 | gap 1, overlap 882247 CGCGTTCCAAATCGA CGCGATAGCCGGC GCCTTT GCCGGC-ATCGCG ATGAGCCTGAACGCG RPE_0789 881625 - 882347 + | LrgB-like protein RPE_0790 882466 - 883140 + | hypothetical protein RPE_0791 883399 - 883181 - | hypothetical protein RPE_0792 883535 - 884029 + | hypothetical protein RPE_0793 884050 - 885117 + | hypothetical protein RPE_0794 885791 - 885135 - | anti-ECFsigma factor, ChrR TERM 829 885664 - 885640 - G 73 -11.3 -3.72695 | overlap 885641 AGCGCTTCCAGCAAA TGGCCGCCGAC CGC GTCGGCGGCGG CGTTGCGGGCGCGGC TERM 830 885663 - 885641 - G 73 -14.8 -2.83403 | overlap 885640 GCGCTTCCAGCAAAT GGCCGCCGAC CGC GTCGGCGGCG GCGTTGCGGGCGCGG RPE_0795 886384 - 885788 - | RNA polymerase sigma factor RpoE RPE_0796 887166 - 886564 - | GTP cyclohydrolase I TERM 831 887644 - 887608 - H 71 -9.5 -3.79747 | gap 2, opp_overlap 887610 887612 887614, overlap 887614 CGACCCAGGAGCAAA GACGAA--GCCCGCCGG CGTCC CCGGCGGGCTGTTCGTT GTTGATCGCTCGTGA TERM 832 887610 - 887642 + H 78 -12.1 -3.73914 | gap 2, opp_overlap 887608 887614, overlap 887612 887614 ACCCAGGAGCAAAGA CGAA--GCCCGCCGG CGTCC CCGGCGGGCTGTTCG TTGTTGATCGCTCGT TERM 833 887612 - 887638 + H 86 -15.1 -3.56142 | opp_overlap 887608 887614, overlap 887610 887614 CCAGGAGCAAAGACG AAGCCCGCCGG CGTCC CCGGCGGGCTG TTCGTTGTTGATCGC TERM 834 887614 - 887636 + H 93 -17.7 -3.3516 | opp_overlap 887608 887614, overlap 887612 887610 AGGAGCAAAGACGAA GCCCGCCGG CGTCC CCGGCGGGC TGTTCGTTGTTGATC TERM 835 887636 - 887614 - H 95 -17.7 -3.48671 | opp_overlap 887614 887612 887610, overlap 887608 AGGAGCAAAGACGAA GCCCGCCGG CGTCC CCGGCGGGC TGTTCGTTGTTGATC TERM 836 888704 - 888685 - g 81 -10.7 -4.11216 | GCTTCACCGCGAAAA GCCGTCG GACGAA CGACGGC ATCTGACGCTGGCCC RPE_0797 887876 - 889156 + | citrate transporter RPE_0798 890527 - 889445 - | hypothetical protein RPE_0799 891125 - 890568 - | HNH endonuclease TERM 837 891312 - 891261 - R 75 -14.4 -2.78395 | gap 1, opp_overlap 891269, overlap 891269 891270 AACCCGGAGCAAGGA CGTCGAAACGGCGCGATCGAGCCCC GCA GCGGCTCGATCG-GCCCATTCGTCA CATCGCCAGATGCGG TERM 838 891304 - 891269 - R 81 -14 -3.59315 | gap 1, opp_overlap 891269, overlap 891261 891270 GCAAGGACGTCGAAA CGGCGCGATCGAGCCCC GCA GCGGCTCGATCG-GCCC ATTCGTCACATCGCC TERM 839 891303 - 891270 - R 84 -17.5 -2.75268 | gap 1, opp_overlap 891269, overlap 891269 891261 CAAGGACGTCGAAAC GGCGCGATCGAGCCCC GCA GCGGCTCGATCG-GCC CATTCGTCACATCGC RPE_0800 892779 - 891310 - | glycogen/starch synthases, ADP-glucose type glgC 894038 - 892776 - | glucose-1-phosphate adenylyltransferase TERM 840 894389 - 894355 - g 76 -15.9 -2.87132 | opp_overlap 894361, overlap 894361 GTCGCTTGCGACAGA TCAAAACAGCTCACC GGTTT GGCGAGCTGTTCTGA CCGGCTAAGCCGTCG TERM 841 894383 - 894361 - g 93 -11.3 -4.39166 | opp_overlap 894361, overlap 894355 TGCGACAGATCAAAA CAGCTCACC GGTTT GGCGAGCTG TTCTGACCGGCTAAG RPE_0802 894137 - 894397 + | hypothetical protein RPE_0803 895403 - 894414 - | signal-transduction protein RPE_0804 897238 - 895679 - | Acetyl-CoA hydrolase RPE_0805 898531 - 897557 - | hypothetical protein TERM 842 900037 - 900069 + G 78 -6.2 -4.59773 | opp_overlap 900064, overlap 900031 TCAGGCGATCGCGGA CTGCGTTCGATCGT TCATC GCCAACGAGCGCAG TTTTTCGCGATCCGA RPE_0806 899057 - 900220 + | glycosyl transferase, group 1 RPE_0807 900284 - 902530 + | lipopolysaccharide biosynthesis RPE_0808 902530 - 903684 + | glycosyl transferase, group 1 TERM 843 904549 - 904596 + G 76 -6.1 -4.56597 | overlap 904550 904594 TTTCCCTATGGACGC TCCGGCGATTGCG-GCCCGCGCG ACTT CGCGCTGGCGCGTCAA-GCCGGC TTTTTCAGCGCGGCG RPE_0809 903739 - 904761 + | polysaccharide deacetylase RPE_0810 904754 - 905908 + | glycosyl transferase, group 1 TERM 844 906863 - 906873 + G 70 -2.4 -4.66833 | ATATCGGGCGATGGA CTCC GCA GGCG TTTTTCGAGTTGAGC RPE_0811 906154 - 907185 + | methyltransferase type 11 TERM 845 908621 - 908640 + G 79 -5 -4.80455 | gap 1, overlap 908619 908624 GGCAGGCGCGTGCTG CGCGATGCG GCG CGTATC-CG TTTTATGTTTCGATC RPE_0812 907250 - 908680 + | polysaccharide biosynthesis protein RPE_0813 909913 - 908720 - | glycosyl transferase, group 1 TERM 846 911278 - 911260 - g 74 -7.4 -4.26076 | CGATCTGGACGAAAA CCAGACCA CCA TGATCCGG CTGCCTCGGCCGAAG RPE_0814 909983 - 911299 + | hypothetical protein RPE_0815 911442 - 911822 + | hypothetical protein RPE_0816 912420 - 912085 - | hypothetical protein TERM 847 912307 - 912285 - G 74 -5.4 -4.56597 | overlap 912286 912287 CCTCGGCGCGAAAAA GGCGGTAGCC GAT GGCGACCAGC ACGGCGCAGACCGCC TERM 848 913310 - 913269 - g 79 -16.5 -3.05844 | gap 1, opp_overlap 913296 913305, overlap 913273 GGCCGCATTTCAAGA CCAAGGCCA-GCGCGCTGCC GCC GGCCGCGCGTGCGGCCCTGG AGGCGTTGGGCCGCC TERM 849 913306 - 913273 - g 73 -12.3 -3.37245 | gap 1, opp_overlap 913296 913305, overlap 913269 GCATTTCAAGACCAA GGCCA-GCGCGCTGCC GCC GGCCGCGCGTGCGGCC CTGGAGGCGTTGGGC RPE_0817 912464 - 913447 + | RluA family pseudouridine synthase RPE_0818 913665 - 914564 + | RNA polymerase factor sigma-32 TERM 850 914616 - 914588 - T 100 -20.3 -3.53012 | opp_overlap 914589, overlap 914589 GCGGTCTGCCTCAAA GCCCCCGCCGAAC CTG GTTCGGCGGGGGT TTTAATTTGAGATCG TERM 851 914589 - 914615 + T 100 -23.8 -4.55798 | opp_overlap 914589 914588 CGGTCTGCCTCAAAG CCCCCGCCGAAC CTG GTTCGGCGGGGG TTTTAATTTGAGATC TERM 852 914615 - 914589 - T 100 -23.8 -2.71712 | opp_overlap 914589, overlap 914588 CGGTCTGCCTCAAAG CCCCCGCCGAAC CTG GTTCGGCGGGGG TTTTAATTTGAGATC TERM 853 914735 - 914716 - T 100 -12.8 -5.27938 | opp_overlap 914716 ACGGGCAAACAAAAA GAGCGGCC GCGA GGCCGCCC TTTTGCGTAGTTGAT TERM 854 914716 - 914735 + T 81 -10.6 -4.24294 | opp_overlap 914716 ACGGGCAAACAAAAA GAGCGGCC GCGA GGCCGCCC TTTTGCGTAGTTGAT RPE_0819 916375 - 914762 - | phosphoenolpyruvate carboxykinase TERM 855 915230 - 915197 - G 73 -13.1 -3.32268 | gap 1, opp_overlap 915189, overlap 915173 GAAGCAGGTCGAGAA CACCGGGCTCGGC-TC GGT GACGCCGCGCTCGGTG CCGGCGACTTTCGCG RPE_0820 917304 - 916567 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein TERM 856 917255 - 917200 - G 73 -12.2 -3.42702 | gap 1, overlap 917195 917198 917201 GACCAGGGAACAATA GGGGGCGCCGGAGCC-GGCGGCGAGGG TGG CCAGCGCCCCCTGGCGACGGCGCCGCA ACAGCGAGCGGGCGA TERM 857 917254 - 917201 - G 74 -15.7 -2.65139 | gap 1, overlap 917195 917200 917198 ACCAGGGAACAATAG GGGGCGCCGGAGCC-GGCGGCGAGGG TGG CCAGCGCCCCCTGGCGACGGCGCCGC AACAGCGAGCGGGCG RPE_0821 917504 - 918205 + | two component transcriptional regulator TERM 858 918440 - 918457 + G 100 -7.7 -5.28942 | gap 1, overlap 918416 CGGCCGATGCGCTGG CTGCGCCG CGC CGG-GCAG TTTTTCTTTAGCCTC TERM 859 918929 - 918913 - g 70 -11.5 -3.37796 | GCCGACCAGCGAGAA GCCCGGC TTC GCCGAGC GCACCATGATCGCGA RPE_0822 918272 - 920131 + | periplasmic sensor signal transduction histidine kinase RPE_0823 920128 - 920598 + | HPr kinase RPE_0824 920786 - 921187 + | PTS system fructose subfamily IIA component RPE_0825 921220 - 921519 + | HPr family phosphocarrier protein RPE_0826 923051 - 921516 - | hypothetical protein TERM 860 924000 - 923977 - g 80 -14.6 -3.39895 | GCCGCGATCAAGGAA GTCGCCGACA CCCG CGTCGGCGAC ACCATCACCGACGAT TERM 861 924188 - 924207 + G 71 -3.4 -4.67904 | overlap 924186 CCTCCGCCGCGCTCG GCTTCGGC TTCC GCTGCGGC TTTTTGGGATTGCTG RPE_0827 923164 - 924975 + | GTP-binding protein LepA RPE_0828 925438 - 925139 - | hypothetical protein RPE_0829 925700 - 925936 + | hypothetical protein RPE_0830 925923 - 926912 + | alpha/beta hydrolase fold TERM 862 927149 - 927114 - f 77 -12.5 -3.59262 | GCTGACATCGCGAAA CGACGAGGTGGGGCG CAGCAT CGCGCCGCCTCATCG GGCGATCGTGCTGCA TERM 863 928432 - 928483 + G 81 -14.5 -3.53012 | overlap 928407 928433 928478 CGCGGCCCGCGGAGG AGCGCTTGCTGCGCGCCGCTG-AGC GCCG GCTGCAGCG-TGCCCAGCAGGCGCC TTTGGCGCGCCAACG TERM 864 928433 - 928482 + G 85 -18 -2.71712 | overlap 928407 928432 928478 GCGGCCCGCGGAGGA GCGCTTGCTGCGCGCCGCTG-AGC GCCG GCTGCAGCG-TGCCCAGCAGGCGC CTTTGGCGCGCCAAC RPE_0831 927666 - 929564 + | cytochrome C family protein TERM 865 929757 - 929792 + G 71 -9.6 -3.85698 | gap 1, overlap 929749 CAACGCCGCGGACGC TCCGGCCGCCCCG-GGC CCG GTCGCGGTGCCGCTGGA TTTCTGGGCGGCGCA TERM 866 930200 - 930217 + G 72 -8.3 -4.08064 | overlap 930201 930209 930211 CTGGTCCGACCGTGA CCCCCGC CACG GCGGGGC TTTTGACCGCCGCTT TERM 867 932038 - 931988 - g 73 -11 -3.64703 | opp_overlap 932007 CGCGCCTGATCGAAA TGGGCGGCACCAACCCGAACTACG ACG CGCAGTTCGTGCAGCTGTCGCTCA ACGCCAAATGGTGAC RPE_0832 929671 - 932052 + | putative outer membrane protein precursor TERM 868 932361 - 932340 - g 79 -5 -4.8048 | overlap 932342 CGCGCAGACGAAAAA GGCGGCGC AAAAGG ACGCCGGC TATCAGGATTCGCCG RPE_0833 932212 - 932493 + | hypothetical protein TERM 869 933139 - 933160 + G 77 -12.9 -3.55548 | opp_overlap 933134, overlap 933150 933153 CTCGACCGAACCTCG CGGGGCCGC CCCG GCGGCGCCG TTTGCGCCGGTGTTC RPE_0834 932951 - 933778 + | porin TERM 870 933832 - 933812 - f 76 -14 -3.14564 | opp_overlap 933812 TGAGGGTTTGACGAA CAGCCGGC GCGAA GCCGGCTG TTTCGCTTCGAGCTT TERM 871 933812 - 933832 + F 84 -14 -3.75897 | opp_overlap 933812 TGAGGGTTTGACGAA CAGCCGGC GCGAA GCCGGCTG TTTCGCTTCGAGCTT RPE_0835 934094 - 936178 + | DEAD/DEAH box helicase domain-containing protein TERM 872 936172 - 936158 - T 100 -8.6 -5.45652 | opp_overlap 936171 AGCTTCAAGAAAAAA GCGAAA AAG TTTCGC GACTGATCGTTAGTC RPE_0836 937213 - 936329 - | ADP-ribosyl-(dinitrogen reductase) hydrolase RPE_0837 938069 - 937236 - | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase TERM 873 938464 - 938476 + G 70 -10.5 -3.72695 | opp_overlap 938462 938463 TGGTCTCGGAAAAGG CGGCG ATT CGCCG TTTCGTCGGCGAGCT RPE_0838 938253 - 938978 + | glutamine amidotransferase class-I TERM 874 939004 - 939026 + T 70 -10.4 -3.56092 | opp_overlap 938983 GCTGTGCGTGCCCCG GATGCGGCGC AGC GCGCCGCCGC TTTGCGGCGTGGTGC RPE_0839 939568 - 939143 - | hypothetical protein TERM 875 939745 - 939776 + H 82 -10.9 -4.07568 | gap 1 CATCCCCGCCAACGC CGT-CATGGCCGGG CTTGA CCCGGCCATCCACG TTTTGGAGCGAGGCC RPE_0840 940000 - 940353 + | hypothetical protein RPE_0841 940587 - 940363 - | hypothetical protein RPE_0842 941528 - 940668 - | hypothetical protein TERM 876 941377 - 941344 - G 72 -8.7 -4.08767 | gap 1, overlap 941345 TGCAGCGCGCGAAAA CGTCCGCCGTCGCGCC CCA GCCGCG-CGGTGGACT GGCTCTGGAACTCGC RPE_0843 942812 - 941613 - | pyrroloquinoline quinone biosynthesis protein PqqE RPE_0844 943138 - 942809 - | coenzyme PQQ synthesis D TERM 877 942894 - 942925 + g 70 -3.6 -4.57073 | gap 1, overlap 942895 AGCATCGCGATCACG T-CGACGCCGATCAC CGC GCGATCAGCGGCGTA TTTTTGCGCGAGCTG TERM 878 942895 - 942923 + g 70 -8.7 -3.90048 | overlap 942894 GCATCGCGATCACGT CGACGCCGATCAC CGC GCGATCAGCGGCG TATTTTTGCGCGAGC RPE_0845 943939 - 943148 - | pyrroloquinoline quinone biosynthesis protein PqqC RPE_0846 944919 - 943936 - | pyrroloquinoline quinone biosynthesis protein PqqB TERM 879 944629 - 944572 - G 87 -17.2 -3.36878 | gap 3 TTCACGCATCGACAA CAGCCCGGCCACC-GCATCGA-CCTCACC ATT GGTGAGGATC-ACGCCGGCGATCGGGCTG TGGCGAAGCCGTCCC TERM 880 944995 - 944972 - H 70 -12.4 -3.15544 | opp_overlap 944960 944959 TGTCACGCCCACGAA CGAGCGTGTG ATCT CTCACGCTCG GCGTGGCGTAACTGA TERM 881 946963 - 946939 - g 71 -12.1 -3.28712 | GTTCTTCGCCGACAA CTTGCCGCGCA ACC CGAGCGGCAAG ATCCTGAAGCGCAAT RPE_0847 945443 - 947023 + | acyl-CoA synthetase TERM 882 947392 - 947365 - g 74 -5.6 -4.51174 | gap 1, overlap 947366 GTACGAGAACGAAAA CGTCGACATGATC GTC GATC-TGCCGACT TCAGCCACCGCGCTC TERM 883 948065 - 948120 + G 72 -5.2 -4.36914 | gap 1, opp_overlap 948058 948064 948065 948081, overlap 948066 AGCAAGGACACCAAG GCGGTGCTGGCGAAGATG-CGCGCAAC GCC GGTGCGCGACGCCTTCACCGACAACGG TTTTCTGCGCGAAGA RPE_0848 947075 - 948292 + | extracellular ligand-binding receptor RPE_0849 949266 - 948436 - | hypothetical protein RPE_0850 950257 - 949319 - | beta-lactamase domain-containing protein TERM 884 950586 - 950612 + H 76 -5.7 -4.58395 | ATACGGCCATTTCAG CGGCAGCCAAG CAACC CGAGGCTGTCG TTTTTGAACGGTCAG RPE_0851 951019 - 952830 + | Pyrrolo-quinoline quinone TERM 885 952848 - 952882 + F 100 -22.2 -4.4009 | overlap 952850 TCGCCACGATCGCTT CTCCCGGCGCATGGAT CGC ATCCGTGCGCCGGGCG TTTTGTGGGGTGAAG TERM 886 952850 - 952880 + F 100 -23.4 -2.53918 | overlap 952848 GCCACGATCGCTTCT CCCGGCGCATGGAT CGC ATCCGTGCGCCGGG CGTTTTGTGGGGTGA TERM 887 952979 - 952969 - f 75 -3.2 -4.82518 | AAAACACCAAGAAAA CAGC ACA ACTG GGAGGAAGCAACTTG RPE_0852 952992 - 953564 + | hypothetical protein RPE_0853 953620 - 954549 + | extracellular solute-binding protein RPE_0854 954593 - 955225 + | hypothetical protein RPE_0855 955472 - 956317 + | hypothetical protein TERM 888 956390 - 956374 - g 73 -9.3 -3.96449 | overlap 956376 CAAGATGGCAAAGAA GACGGGC GCT GCCCGAC GTAAGACGGCGAGCG RPE_0856 956354 - 956683 + | hypothetical protein RPE_0857 956930 - 956658 - | hypothetical protein RPE_0858 958439 - 956970 - | FAD dependent oxidoreductase TERM 889 958210 - 958172 - G 79 -16.6 -2.89564 | opp_overlap 958205 958206 958208 CGCGGACCTGATACA GCGCGCCCGAGGCCACCC ATT GCACGGCATCGAGCGCGC CGGCGCGTTTCAGCG RPE_0859 959749 - 958553 - | hypothetical protein TERM 890 959658 - 959681 + g 71 -9.4 -3.78934 | opp_overlap 959639 959640, overlap 959652 959658 959653 ACCTCCCCGGCAGGC GCCGGCGCCG CTTT CGGCGCGGCC TTGTTCTGGGCGAAC TERM 891 959846 - 959877 + r 75 -4.2 -4.7078 | opp_overlap 959825 959850, overlap 959847 959848 CGGCCCTCGCGGCAA AAAAGAAGGCCGCC CGGA GGCGGCCTTCGGCA TTTTTGGGTCCTTCG TERM 892 959873 - 959850 - R 100 -18.2 -5.00616 | opp_overlap 959848 959847 959846, overlap 959825 CCTCGCGGCAAAAAA GAAGGCCGCC CGGA GGCGGCCTTC GGCATTTTTGGGTCC RPE_0860 961374 - 959938 - | hypothetical protein TERM 893 961451 - 961469 + r 100 -13.1 -4.4767 | opp_overlap 961451 TCCACGCACAAAAAA GCCCGGC GCAAG GCCGGGC TTTTGTCGTCGGTAC TERM 894 961469 - 961451 - R 100 -13.1 -5.28176 | opp_overlap 961451 TCCACGCACAAAAAA GCCCGGC GCAAG GCCGGGC TTTTGTCGTCGGTAC groEL 963142 - 961499 - | chaperonin GroEL TERM 895 961921 - 961964 + g 71 -9.4 -3.8917 | gap 1, overlap 961924 961943 GCACGATGCCTTCCT GCACCGCGGCGCGGGTGGCGT TGA GCGC-GTCCTCGACGCGGTCC TTCTTCTCCTTGACC TERM 896 962137 - 962156 + g 74 -5.6 -4.50058 | overlap 962133 962150 CCGCCTTCTTGCCGG CGCCGCCG ACGA TGGTGGTG TTTTCCTTGTCGATC TERM 897 963285 - 963265 - R 71 -14 -2.67428 | overlap 963261 963262 TCGATCAAGAATGGA TGCCCGGG TCTGG CCCGGGCA TGACGGGGGAGAGCG RPE_0862 963617 - 963321 - | chaperonin Cpn10 TERM 898 963495 - 963507 + g 83 -9.1 -4.4078 | overlap 963491 CACGGCGACGATTTC GCCCT GCG AGGGC TTTTCCTTGGCGGAG RPE_0863 963807 - 964445 + | hypothetical protein TERM 899 964585 - 964643 + G 74 -15.3 -2.61383 | gap 2, overlap 964606 ATCTATCCGCCGGTG CTGACCATGCCGCATGTC-GCGGCC-GCC CAT GGCTGGTCGCTGACGTTCGGCATGGCGGG CTTCTCGCTGGCGCT TERM 900 965021 - 965066 + G 70 -13.1 -3.01712 | CCGCGGTGTTGGCGC TGGTGATCGCGCCGCTGCATG CCTT CGCGCTGCCGCGCGCTCGCCA TGTTCCGCCGCCGCC RPE_0864 964483 - 965691 + | major facilitator transporter TERM 901 965722 - 965698 - T 100 -19.3 -4.47217 | AAGCATTAACGAAAA GGACCGACCGC TGG GCGGCCGGTCC ATCTCACAGTTCAAA RPE_0865 966546 - 965758 - | hypothetical protein TERM 902 966359 - 966383 + g 72 -7.1 -4.2349 | gap 1 CTCGAGGCCTTGATC GCGGCGGTCG TGACGT CG-TCGCCGC TTTTCGGTGTGACGG TERM 903 966741 - 966767 + H 100 -11.6 -4.43681 | opp_overlap 966741 966740 966739 TGGTGAATCAAAATG CCGCTTCCGTTT ACC AAACCGAGGCGG TTTTGATCTTAGGTG RPE_0866 966843 - 967643 + | ErfK/YbiS/YcfS/YnhG TERM 904 967691 - 967659 - T 89 -16.4 -3.53012 | gap 1, opp_overlap 967647 967665, overlap 967665 GCGCGGTGCTGCAAA CGA-AAACGGCCGCC CGAG GGCGGCCGTTCGTCG TCTTCGCGCAATGTT TERM 905 967665 - 967684 + T 88 -16.4 -3.27923 | opp_overlap 967665 967659, overlap 967647 TGCTGCAAACGAAAA CGGCCGCC CGAG GGCGGCCG TTCGTCGTCTTCGCG TERM 906 967684 - 967665 - T 100 -16.4 -4.54727 | opp_overlap 967647 967665, overlap 967659 TGCTGCAAACGAAAA CGGCCGCC CGAG GGCGGCCG TTCGTCGTCTTCGCG TERM 907 967863 - 967843 - T 95 -11.1 -4.65916 | overlap 967846 TCCAGCCGAACAAAA CCATCGCGG CCA CCGCGATCG CCGGCCATGCTAGGA RPE_0867 968144 - 967887 - | hypothetical protein RPE_0868 969180 - 968350 - | putative periplasmic ligand-binding sensor protein TERM 908 968689 - 968653 - G 82 -16.6 -3.30124 | gap 2, overlap 968655 GCGGATGCTGGACAA GAGCAGCGAGCCGCCGAC CAC GCCGGCGGC-CGCCGC-C GCCGCGGTGCCGAGG TERM 909 968688 - 968655 - G 100 -20.3 -3.21924 | gap 1, overlap 968653 GGATGCTGGACAAGA GCAGCGAGCCGCCGAC CAC GCCGGCGGC-CGCCGC CGCCGCGGTGCCGAG TERM 910 969360 - 969326 - R 75 -12.1 -3.63694 | gap 1, overlap 969313 AGCGACCGGCAATAA GGCG-GGCGGGTCAGC TCAG GCTGACGCGGCTCGCC GCCAGCAACGCCAAG RPE_0869 970181 - 969336 - | hypothetical protein TERM 911 969669 - 969636 - G 72 -13.1 -3.21099 | gap 1, opp_overlap 969643 GCTGTCGAGCAGCAA CGCCTTCGGTTCGCCG AGG CGGCGG-CCGAAGGGG AGGCTTCGGCCGCAC TERM 912 970184 - 970219 + r 70 -10.4 -3.60948 | gap 1, overlap 970206 970217 CGGCCTGGTTCATTC CGCGGCGG-CCCGCT CGCCGGC AGCGGGATCGGCGCG TTTGACGCTGTGTTC RPE_0870 971212 - 970178 - | glycosyl transferase family protein TERM 913 970496 - 970481 - G 70 -6.1 -4.18018 | CGGCGCCACCGAAAA CGAGG TGATGC CCTCG ATCGACAGCCCGATC hisG 972290 - 971313 - | ATP phosphoribosyltransferase TERM 914 972161 - 972135 - G 72 -14.4 -2.98823 | GCTGGCCGACAGATA GGCGACCTCGAC ATT GTCGAGGCCGAC AATGGTGCCGCGATA hisZ 973450 - 972287 - | ATP phosphoribosyltransferase regulatory subunit TERM 915 973382 - 973328 - G 79 -7 -4.61231 | overlap 973329 GGACAGGTCCAAAAA TGGCTCGGCCGGCT-GCAGGATCGCC GGGCG GGCG-TGCTGATAGCCGGCCTGGCCG AACGAGTTCAGCAGC RPE_0873 974332 - 973556 - | hypothetical protein TERM 916 974751 - 974780 + G 82 -17.1 -3.06183 | gap 1 GGTTTCCCCTCGGCG GGCG-CGCCGCCGG TCT CGGGCGGCGGCGCC TTCGGTCCGCCTCCC RPE_0874 974547 - 975230 + | hypothetical protein ubiA 975237 - 976172 + | prenyltransferase RPE_0876 977100 - 976576 - | hypothetical protein TERM 917 977063 - 977031 - G 100 -20.6 -3.10245 | opp_overlap 977060 977062 GGAGCGGAAGAGAGA GCGGGTCGAGCCGC AGCGG GCGGCTCGACCCGG CGGGGTGAACCCCGC TERM 918 977060 - 977081 + g 85 -12.9 -4.08557 | opp_overlap 977031, overlap 977062 AGCGGGCGGCTCGAC CCGGCGGGG TGAA CCCCGCCTG TTGTTGTTTGACGCC TERM 919 977062 - 977079 + g 80 -14.1 -3.63464 | opp_overlap 977031, overlap 977060 CGGGCGGCTCGACCC GGCGGGG TGAA CCCCGCC TGTTGTTGTTTGACG TERM 920 978103 - 978060 - g 75 -13.9 -3.30771 | CGACACGCCGGACAA GATCGGC-CGCACCGCCGGCG AACG CGC-GGTGGCGCGCGCCAATC CGCGCAAGGTCGCCA TERM 921 978257 - 978247 - g 70 -4 -4.56597 | CGGCTCGGCGAAAAA TTGT TCG ACAA TCCGATCCGCATCAT RPE_0877 977368 - 978774 + | peptidase U62, modulator of DNA gyrase RPE_0878 978761 - 979594 + | inositol monophosphatase TERM 922 979716 - 979732 + G 77 -5.8 -4.58395 | opp_overlap 979707, overlap 979700 CAAGGATCTCGATCA GGTCGA GATCG TCGGCC TTTTTCCGAACTACG RPE_0879 979630 - 979872 + | hypothetical protein RPE_0880 979984 - 981288 + | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein RPE_0881 981281 - 982303 + | tetraacyldisaccharide 4'-kinase RPE_0882 982552 - 982331 - | hypothetical protein RPE_0883 985261 - 982823 - | diguanylate cyclase/phosphodiesterase TERM 923 982977 - 983019 + g 90 -18.4 -3.01712 | overlap 982986 AGTTCGCGCAGTTGT CCCTCGGTCTCGACGCCCTC GGC GAGCACGTCGAGGCCGAGCG TCTTGCCCAGGGCAA TERM 924 984395 - 984420 + g 70 -3.8 -4.43844 | opp_overlap 984385 984383 ATAGATCGCCCGCAA CGGCGACCCG ATTTCC CGGAATGCCG TTTTCTCGCTGGTCA RPE_0884 986161 - 985262 - | extracellular solute-binding protein RPE_0885 987020 - 986277 - | hypothetical protein RPE_0886 988449 - 987007 - | 1-aminocyclopropane-1-carboxylate deaminase family protein RPE_0887 989738 - 988626 - | SbmABacA family protein RPE_0888 990139 - 990366 + | hypothetical protein RPE_0889 991630 - 990347 - | acyl-CoA dehydrogenase domain-containing protein RPE_0890 992004 - 991642 - | putative cytochrome c552 precursor TERM 925 991765 - 991741 - G 70 -2 -4.62069 | gap 1, overlap 991744 GCTGGAGTTCAAAAA CACCCTCAGCG ACAG CGCGGTGG-TG GAAGGCATGGCGGCG RPE_0891 992474 - 992001 - | hypothetical protein RPE_0892 994416 - 992587 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 926 994679 - 994733 + G 86 -17.2 -3.23853 | gap 4, overlap 994677 CGCGAAGGTGGTGAT CGCCGG-CCG--CCGCGCCGCCGAGGGC GAG GCGCT-GGCCGCGCGGCTCGGTCCGGCG TGTTGCTTCCGCCAG TERM 927 994863 - 994835 - g 74 -12.3 -3.61398 | overlap 994836 CTGCCTGTTCAACAA CGCCGGCGGCCCG GCG CAGACCGGCGGCA TCGCAGGGCTCGAGG TERM 928 995258 - 995276 + G 70 -3.8 -4.56597 | overlap 995240 CGGCCTGCCGGACGA CATCGC CCAGGCC GCGGTG TTTTTGGCCAGCGAC RPE_0893 994575 - 995417 + | short-chain dehydrogenase/reductase SDR RPE_0894 995451 - 996467 + | putative adenylate/guanylate cyclase TERM 929 996498 - 996552 + T 83 -15.9 -3.23452 | gap 2, opp_overlap 996508 996512, overlap 996504 996508 996512 CCTTCGTCATTGCGA GCGAAGCGAAGCAATCCAGGGCTCCGC AAC GTGTGGCCCTGGATTGCTTGG-T-CGC TTCGATTCTCGCAAT TERM 930 996504 - 996548 + T 90 -20.1 -2.57985 | opp_overlap 996508 996512, overlap 996498 996508 996512 TCATTGCGAGCGAAG CGAAGCAATCCAGGGCTCCGC AAC GTGTGGCCCTGGATTGCTTGG TCGCTTCGATTCTCG TERM 931 996544 - 996508 - T 83 -15.1 -3.19192 | opp_overlap 996508 996504 996498 996512, overlap 996512 TGCGAGCGAAGCGAA GCAATCCAGGGCTCCGC AAC GTGTGGCCCTGGATTGC TTGGTCGCTTCGATT TERM 932 996508 - 996544 + T 95 -19.5 -3.22656 | opp_overlap 996508 996512, overlap 996504 996498 996512 TGCGAGCGAAGCGAA GCAATCCAGGGCTCCGC AAC GTGTGGCCCTGGATTGC TTGGTCGCTTCGATT TERM 933 996512 - 996540 + T 76 -13.1 -3.41581 | opp_overlap 996508 996512, overlap 996508 996504 996498 AGCGAAGCGAAGCAA TCCAGGGCTCCGC AAC GTGTGGCCCTGGA TTGCTTGGTCGCTTC RPE_0895 997965 - 996589 - | cytochrome P450 TERM 934 996959 - 996938 - G 86 -7.9 -4.8622 | opp_overlap 996945, overlap 996939 CCGCGGAACGAAAAA TCGCGCACC GCGC GGCGCGGGA TCGACGGTACCGGCG RPE_0896 998218 - 999147 + | heat shock protein HtpX TERM 935 999229 - 999209 - T 84 -16.9 -2.78384 | overlap 999163 GGTCGGCCGAGCAGA GCGCGATGC CAA GCATCGCGC GAAGTGGAGGCCGGG RPE_0897 1000542 - 999358 - | aminotransferase, class V TERM 936 999793 - 999764 - G 70 -3.5 -4.44667 | gap 1, overlap 999768 TCGGCGAACAACAAA TCGATCGC-CGCGC GCA GCGCGAACAACAGA TGCACCGGCGCGGTG TERM 937 1000762 - 1000739 - R 84 -16 -3.06183 | gap 1 GTCATTGCGAGCCAA CGGGTCGGCGC GAA GCGCCG-CCCG ATGACAGGCTCCGCG RPE_0898 1001681 - 1000923 - | nuclease RPE_0899 1003511 - 1001775 - | hypothetical protein RPE_0900 1003825 - 1004694 + | peptidase C14, caspase catalytic subunit p20 TERM 938 1004675 - 1004690 + T 70 -11.8 -3.14931 | overlap 1004676 CCGAAGCCGCCACCG CCGCCG CGAC CGGCGG TTAGTCCGCGCTCGC RPE_0901 1006879 - 1004741 - | glucosyltransferase MdoH mdoG 1008372 - 1006867 - | glucan biosynthesis protein G RPE_0903 1009422 - 1008520 - | RND family efflux transporter MFP subunit RPE_0904 1011328 - 1009475 - | AsmA family protein TERM 939 1010470 - 1010482 + g 73 -6.2 -4.36914 | overlap 1010452 TCCATGGCGCGTCCG GCCG TGCAT CGGC TTTTGTGCCCGGCAA RPE_0905 1014520 - 1011362 - | acriflavin resistance protein TERM 940 1011661 - 1011614 - G 76 -14.9 -3.17392 | gap 2, overlap 1011589 CATCGGCGAACGGAA TTCGCC-GC-CGGCGCCGAACGC CAAT GCGCTCGGCACCATGCCGGCGAC CATGGCGATGGTAGT TERM 941 1013101 - 1013058 - G 73 -5.9 -4.37886 | gap 1, overlap 1013060 1013084 TGATCCTTCAGAAAA TACGCCGCCAGCACCGGGGT GACGA ACCGCGCCGCCAGCAGCG-A GAAGAACACCTGCAC TERM 942 1013100 - 1013060 - G 77 -11 -3.79687 | overlap 1013058 1013084 ATCCTTCAGAAAATA CGCCGCCAGCACCGGGGT GACGA ACCGCGCCGCCAGCAGCG AGAAGAACACCTGCA RPE_0906 1015413 - 1014520 - | secretion protein HlyD TERM 943 1014891 - 1014942 + g 72 -11.4 -3.54543 | gap 1, opp_overlap 1014896, overlap 1014891 1014894 GCCGCACCCGGCCGA C-CAGATCCGGCGCGTCGTCGCG GCTGATG CGCGCCGTGGCGCCGGGGCTGAG TTTGGCGGCGTGGAT TERM 944 1015504 - 1015514 + r 73 -8.2 -4.07687 | opp_overlap 1015504 1015503, overlap 1015489 1015489 1015512 TCGATGCGGCAAAAG GCCG AAC CGGC TTTTCGCCCGGCGAT RPE_0907 1016218 - 1015559 - | OmpA/MotB domain-containing protein TERM 945 1016159 - 1016144 - G 70 -11.8 -3.35679 | CGCGCTGAGGCACAA CGCCGC GCTG GCGGCG AGTAGCGCGCCCAAC RPE_0908 1017796 - 1016321 - | peptidase C14, caspase catalytic subunit p20 TERM 946 1016889 - 1016927 + g 91 -15.3 -3.97368 | gap 2 GGCTTGGTCGGCTCA GCCACCGCCGGCTTGGCCG GTT CGGTC--GCGGGCGGTGGC TTTGTCGCTTCGACC TERM 947 1017651 - 1017627 - G 73 -15.7 -2.52464 | opp_overlap 1017625 1017624 GCGCGCTTCAATTCA TCGGCGACGGC GCG GGCGTCGCCGA GCGGTTCCTTCAGCA TERM 948 1017918 - 1017936 + H 84 -11 -4.10791 | overlap 1017894 1017909 TCCTGCGCGCCGCGG CGAAGCGT CCC GCGCTTCG TTGTTTGTGAGTGTT TERM 949 1018613 - 1018574 - g 82 -4.9 -4.91109 | opp_overlap 1018598 GCTCGATCAGAAAAA CGACCACGCCGTGC-TCAC CATC GAGACGCCCGACG-GGCCG TATCGGCTCGCGGCG RPE_0909 1018101 - 1019720 + | hypothetical protein TERM 950 1020432 - 1020414 - g 77 -13.1 -3.53091 | overlap 1020371 AGTCGCGCTGGCAAA GCGCGCG GTCGG CGCGCGC CCGCCGGAAAAAACC RPE_0910 1020235 - 1020462 + | hypothetical protein RPE_0911 1020620 - 1021573 + | beta-lactamase domain-containing protein TERM 951 1021594 - 1021566 - f 74 -11.8 -3.53012 | GGGCCGCTCTGCAAA GCGCATGATCCC GCAGA AAGATCATGCGC ACTCGAAATCGGAGG TERM 952 1022289 - 1022262 - g 75 -9 -4.08216 | overlap 1022265 TTACCTCTGCGAAAA CTACGGCGGCGC GTTT ACGCTGCCGGAG CGCGGCCCGATCGGC RPE_0912 1021615 - 1022961 + | homogentisate 1,2-dioxygenase RPE_0913 1023100 - 1024413 + | fumarylacetoacetase hisS 1026211 - 1024610 - | histidyl-tRNA synthetase TERM 953 1024661 - 1024699 + g 73 -3.6 -4.62302 | GCGCACCTCGTCGAT CAGGTCGAGTTGCGGCAC CTT GCGCTGGGCGTCGGCCTG TTTTTGCAGATATTC TERM 954 1025773 - 1025788 + g 85 -6 -4.8622 | opp_overlap 1025765, overlap 1025774 GCATGAACTGGCGGA ACCGGC CGGG GCCGGG TTTTTCGTTGCGGAA RPE_0915 1026361 - 1027704 + | beta alanine--pyruvate transaminase TERM 955 1028658 - 1028710 + G 74 -15.4 -2.66274 | gap 1, overlap 1028658 CCGCCGCCGCCGGCT GTGGCGGTCCCGGCGATGGCC-GCG GCGC CGCTGGCCGTTGCCGGGCCGGACCC CTTGCTTGTCGACGC TERM 956 1028658 - 1028711 + G 80 -15.2 -3.44146 | gap 2, overlap 1028658 CCGCCGCCGCCGGCT GTGG-CGGTCCCGGCGATGGCC-GCG GCGC CGCTGGCCGTTGCCGGGCCGGACCCC TTGCTTGTCGACGCG RPE_0916 1028115 - 1029596 + | diguanylate phosphodiesterase RPE_0917 1029612 - 1030466 + | HAD family hydrolase RPE_0918 1031999 - 1030533 - | hypothetical protein TERM 957 1030619 - 1030671 + g 70 -11.1 -3.56092 | overlap 1030605 CCCGCCGCTGTTTCT GACGGTCGGCGTCGGGGCACAGCGC GGT GCTCTGCGCCATGAGGTCGAGTGTC TTTCGGCCGTCGTCA TERM 958 1031696 - 1031721 + g 89 -14.7 -4.07885 | overlap 1031709 1031711 TGACGCTTTCAGGGT CGCCGCGAACG ATGG CGTTGGCGGCG TTTTCCGCCAGCGTA RPE_0919 1033084 - 1032020 - | hypothetical protein TERM 959 1033203 - 1033193 - R 73 -8.2 -4.08216 | opp_overlap 1033200, overlap 1033181 1033200 TGACGCTTCTCAAAA CGCG AAA CGCG CCCGTGCGGGCGCGT TERM 960 1033200 - 1033217 + r 76 -14.1 -3.16881 | opp_overlap 1033181 1033193 1033200 TCTCAAAACGCGAAA CGCGCCC GTGC GGGCGCG TTGCTGAAATCGATA TERM 961 1033217 - 1033200 - R 84 -14.1 -3.76413 | opp_overlap 1033200, overlap 1033181 1033193 TCTCAAAACGCGAAA CGCGCCC GTGC GGGCGCG TTGCTGAAATCGATA RPE_0920 1033648 - 1033253 - | response regulator receiver protein TERM 962 1033963 - 1033940 - H 85 -10.2 -4.25104 | TTTTGCCCACGAAAA CGGTTCGCGC GGCG GCGCAATCCG CGCTAGTGCTGCGCC RPE_0921 1033979 - 1034839 + | hypothetical protein TERM 963 1035068 - 1035048 - f 74 -4.6 -4.57569 | gap 1 TGACCGGTCGAAAAA CCGTTGCGC GCGT GCGCT-CGG GCGGAAGCAATGCGG RPE_0922 1035099 - 1035311 + | cold-shock DNA-binding domain-containing protein TERM 964 1035416 - 1035440 + T 73 -12.7 -3.19293 | opp_overlap 1035418 CTTCAGAGCATAAAA AACCCGGCCGC AAA GCGGCCGGGAG TTGGCTGTTGAGCTT TERM 965 1035438 - 1035418 - T 100 -19.7 -5.34555 | opp_overlap 1035416 TCAGAGCATAAAAAA CCCGGCCGC AAA GCGGCCGGG AGTTGGCTGTTGAGC RPE_0923 1036089 - 1035466 - | putative outer-membrane immunogenic protein precursor TERM 966 1036679 - 1036632 - g 78 -6 -4.70626 | overlap 1036623 1036634 CAAGAACGTCAAAAA GCGGCTCGCCTCCTACGCCCGG CCGA CCGGGCACGTGATGCGAATCTC GCGAATGATCGCCGC uvrC 1036333 - 1038375 + | excinuclease ABC subunit C RPE_0925 1038488 - 1039105 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 967 1039204 - 1039157 - g 74 -9.8 -3.82031 | gap 1, opp_overlap 1039168, overlap 1039149 1039158 GCAAGGACGAGGAAA CGCTCGATCCGCCCGCCGACG TGCAAAC CGTCGGCGAGTTGATCG-GCT GGCTGTCCGGCCGCG RPE_0926 1039102 - 1039353 + | molybdopterin converting factor, subunit 1 RPE_0927 1039361 - 1039828 + | molybdopterin biosynthesis MoaE TERM 968 1040169 - 1040148 - g 79 -7.3 -4.62069 | gap 1 GGCGGAGTCGAAAAA GCTGCTCGAC ATC ATCGAGC-GC CGCGTCACCACGCGA TERM 969 1040383 - 1040411 + G 81 -10.9 -4.11216 | overlap 1040384 CTGTGCACCGGCTCT GGCTGCCTGGCGA TCC TCGCCAGCCGGCA TTTTCACAATGCGCA TERM 970 1040384 - 1040410 + G 72 -14.4 -3.06515 | overlap 1040383 TGTGCACCGGCTCTG GCTGCCTGGCGA TCC TCGCCAGCCGGC ATTTTCACAATGCGC RPE_0928 1039828 - 1040850 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase RPE_0929 1041682 - 1041071 - | putative methyltransferase RPE_0930 1044247 - 1041884 - | pseudouridine synthase Rsu TERM 971 1042684 - 1042664 - G 84 -5.3 -4.96848 | opp_overlap 1042640 1042668, overlap 1042666 CTTGTGATACAAAAA CAGCCGG GTGCGTT CCGGCGG CGGCAACGGCTTGCC TERM 972 1042856 - 1042816 - G 72 -13.2 -3.08813 | gap 1, opp_overlap 1042816 CGCGACGCGAACACA GCCCGGCGCGCGACACCAC CTTG GCGATG-CGCTCGCCGGCC TTCTTCGGCGCCGGC TERM 973 1043253 - 1043290 + g 77 -7.5 -4.30719 | gap 1, overlap 1043249 1043255 1043256 TCACGGCTGCCGAAC TCCTTGCGCGG-GCCCCG GTC CGGGGCGCCGCGGCCGAA TTTCTTGTCGCCGCC TERM 974 1044171 - 1044226 + g 77 -7.3 -4.51812 | gap 1, overlap 1044186 GAGGCGCCCTTGCCA CCCGATGGCCCCTTGCCGCCGGCGGG CCGGT CGCGCCGGCCGCGCGGG-CCGTTGTC TTTGTTGTTGTCGCG TERM 975 1044186 - 1044221 + g 88 -14.6 -4.02532 | gap 1, overlap 1044171 CCCGATGGCCCCTTG CCGCCGGCG-GGCCGGT CGC GCCGGCCGCGCGGGCCG TTGTCTTTGTTGTTG TERM 976 1044379 - 1044389 + H 74 -5.4 -4.65895 | TGCTGAAGCCCGTTC CTCT AGC AGAG TTTTTCGGTCGAGAC TERM 977 1044598 - 1044617 + G 70 -11.4 -3.41878 | CCGGCAGGCCGCGGC GTCGCTCG GCAG CGAGCGGC TTGTCGATTGCGACC RPE_0931 1044410 - 1044856 + | CMP/dCMP deaminase, zinc-binding TERM 978 1044846 - 1044880 + T 91 -12.1 -4.38712 | gap 1, opp_overlap 1044867 GCGAATTCTTTCAGG CGCGGCGCTGAGCCGT CAGA ACAGC-CAGCGCGGCG TTTTCTCCGCGTAGC RPE_0932 1045334 - 1044861 - | isoprenylcysteine carboxyl methyltransferase TERM 979 1045251 - 1045193 - G 73 -12.4 -3.47227 | gap 3, overlap 1045187 1045174 1045194 TCGCAACCAGGACAA TGCCCAGCAGCGTC-GGCACGGCGCCGTC GAAC GACGGCAGCG-GCCAGGCGCCGCCGAGC- AGAATAGCCGCGCCC TERM 980 1045251 - 1045194 - G 87 -18.4 -2.68015 | overlap 1045187 1045174 1045193 CGCAACCAGGACAAT GCCCAGCAGCGTC-GGCACGGCGCCGTC GAAC GACGGCAGCG-GCCAGGCGCCGCCGAGC AGAATAGCCGCGCCC RPE_0933 1045996 - 1045517 - | PadR-like family transcriptional regulator TERM 981 1045699 - 1045754 + g 95 -16.1 -4.08216 | overlap 1045749 GCTGGCGCATCAGCA CCGCGCGTTCGCCGAACGCGGTG-AGG CGAT CCAGCACCGCG-TCGGCAATGGCGCGG TTTTGGGCCAGATGC TERM 982 1045891 - 1045901 + g 72 -6.8 -4.25104 | overlap 1045880 GGCTCGGCGCGTAGA GACC CGC GGTC TTTTCCTCCAGCACC TERM 983 1046187 - 1046169 - H 78 -5.4 -4.72846 | opp_overlap 1046171 1046173, overlap 1046171 CGATATAGTGAAAAA CATATCTT TTC AAGATATA TCGTAATTACTTCTA RPE_0934 1046453 - 1047583 + | L-carnitine dehydratase/bile acid-inducible protein F RPE_0935 1047616 - 1047819 + | 4-oxalocrotonate tautomerase TERM 984 1047825 - 1047877 + F 70 -12 -3.24924 | overlap 1047803 1047822 1047826 GGGGAAGTAGTCTGT GCGGTCATTCCGGG-GCACGCGCGGC GCA GCCGTGCGTGAACCCGGAATC-TCGA TGTTGTGAATGCGCA TERM 985 1047826 - 1047876 + F 77 -15.5 -2.5474 | overlap 1047803 1047825 1047822 GGGAAGTAGTCTGTG CGGTCATTCCGGG-GCACGCGCGGC GCA GCCGTGCGTGAACCCGGAATC-TCG ATGTTGTGAATGCGC TERM 986 1047939 - 1047899 - f 81 -15.4 -2.99947 | gap 1, opp_overlap 1047890 GAATGCGCAGAGAGA TTCCGGGTTCGCCCGCCGC TGTT GCGGCGAGTGC-CCCGGAA TGACACGCTAAGTTA TERM 987 1048134 - 1048147 + G 74 -8.1 -4.1822 | opp_overlap 1048110 ACGCCATCGCCGGCT GCCTG CCGC CAGGC TTTGTTACGGTCGGC TERM 988 1048335 - 1048293 - g 70 -13.5 -3.05963 | opp_overlap 1048293 ACGGCGACCGCAAGA TCGGCGACGGCCG-CCACGCC CGC GGCCTGGTCAACC-TCGCCGA TTTCAGCAAGCGGGT RPE_0936 1047968 - 1048366 + | hypothetical protein TERM 989 1048410 - 1048384 - T 72 -13.7 -2.71011 | AGTCGCTTGTAATTA CCTCTTCCCGC TCTGC GCGGGGAGAGG TCGCCAAGCGTAGCG RPE_0937 1050728 - 1048665 - | hypothetical protein TERM 990 1049423 - 1049409 - G 73 -3.5 -4.62783 | gap 1, overlap 1049410 1049411 CACGGAGCGGAAAAA CCG-GC TCCA GCGCGG CGGCTCGGACGCCGA TERM 991 1049727 - 1049778 + g 80 -15.8 -3.28712 | opp_overlap 1049725 1049739 CTGCTGGAACAATTC GCGGGTCGGAAACGCGATCAGCGA CAAT TCGTTGATCGGGGTGCCGTCCTGC TTCTCCGGCGGCCGC TERM 992 1050753 - 1050809 + r 100 -21.6 -2.88249 | CTCTCGCCGCTGTCA TTCCGGG-GCGCGCCAACGGGGCCGGTC TTT GGCCGGCCC-GATGACGCGAGCCCGGAA TCTATAACCCCTGTC RPE_0938 1053765 - 1050901 - | double-transmembrane region-like TERM 993 1051591 - 1051558 - G 79 -8.1 -4.56597 | gap 1, overlap 1051561 1051575 GCGCTGCGCCAAAAA CAGCGTC-AGCCCGGA AAG CCCGGCCTTGACGATG GAATCGACGTCGGCA TERM 994 1052737 - 1052683 - G 77 -5.5 -4.65895 | overlap 1052684 CTTCTGATCCAAAAA CTGCGCGATCG-CCGGCTGCGGCGCGC CGC GTTCGCCG-ATCCGGACGTCCGCGAAA GGCCCGAGTGCGCGG TERM 995 1053204 - 1053169 - G 78 -10.2 -4.07885 | GAGGCCGGCGGAAAA CTCGGCGCCGCGGCCG GTGT CGGCGCCGTCGCTGAG CCAGACGATCTCGGC TERM 996 1053571 - 1053554 - G 74 -10.5 -3.84648 | GCGAAGATCACCAAA GCGGCCG CCAG CAGCCGC AGCGCGGTCAGCCAC TERM 997 1053676 - 1053633 - G 70 -13 -3.04144 | gap 1, overlap 1053657 GCGCGATCTCGAACA GCAGCCGCGTCGGCGG-GAAC TCA ATCCGCCGCGGCCGCGGCGGC ATCACCCGCAATAGC RPE_0939 1054700 - 1053762 - | hypothetical protein RPE_0940 1055701 - 1054700 - | ATPase RPE_0941 1055910 - 1056515 + | hypothetical protein TERM 998 1057011 - 1057031 + G 75 -3.1 -4.80453 | opp_overlap 1056997, overlap 1057012 ACACCTCGGAAGTGG ACGACGCCT TCG AGGTGCCGC TTTCTTTTCTGATGA RPE_0942 1056512 - 1057189 + | NUDIX hydrolase RPE_0943 1057186 - 1057449 + | hypothetical protein RPE_0944 1057463 - 1058719 + | polynucleotide adenylyltransferase region TERM 999 1058879 - 1058869 - T 77 -2.4 -5.0538 | GGCTATCTCAAAAAA GGCC TCA GGCG ACTTTGCTGCTTTCC RPE_0945 1059115 - 1058873 - | hypothetical protein RPE_0946 1059865 - 1059233 - | hypothetical protein RPE_0947 1060323 - 1059862 - | tRNA/rRNA methyltransferase (SpoU) TERM 1000 1060382 - 1060358 - H 88 -14.3 -3.7046 | opp_overlap 1060356 1060355 CAAAAAATCCCGAAA GCGCAGGCCAA TCA TTGGGCTGCGC GAGTTTCAGGCAATG RPE_0948 1060607 - 1061134 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 1001 1061237 - 1061222 - g 76 -2.4 -4.84914 | overlap 1061223 1061224 AGCCACAGAACAAAA CCCTGC AGTG GCTGGA ACAACGCCTGCCGAT TERM 1002 1061865 - 1061850 - g 72 -6.8 -4.17762 | CACGGGTCAAAACAA CCCGAC CGGC GTCGAG CCGAAGACCGAGAAG RPE_0949 1061185 - 1063260 + | cytochrome c1 TERM 1003 1063275 - 1063317 + F 73 -12.9 -3.1886 | gap 1, opp_overlap 1063277 1063289, overlap 1063289 ATCGGCTCCTGGACA CA-CCAAACGGAAAAGCCCC TTCG GGGGCTTTTTTGTTGGGCTG TTGCTGAGATTGCCT TERM 1004 1063289 - 1063302 + F 100 -9.5 -5.46657 | opp_overlap 1063289 1063277, overlap 1063275 ACACCAAACGGAAAA GCCCC TTCG GGGGC TTTTTTGTTGGGCTG TERM 1005 1063302 - 1063289 - f 83 -9.5 -4.38313 | opp_overlap 1063275 1063289, overlap 1063277 ACACCAAACGGAAAA GCCCC TTCG GGGGC TTTTTTGTTGGGCTG RPE_0950 1063405 - 1064079 + | carboxymethylenebutenolidase RPE_0951 1064149 - 1064430 + | hypothetical protein TERM 1006 1064987 - 1065025 + G 75 -9.5 -4.03413 | gap 1, overlap 1064978 1064976 1065021 CGGTGGCGTTGCTGG CGGTGACGCTGGCCG-GC AAGC GCGCTGCCACCGTCGTCG TTTATGTCGCGACGT TERM 1007 1065043 - 1065077 + G 100 -12.1 -4.46212 | gap 1 TATGTCGCGACGTTG CTGATCTGCGTCGCCG GGTG CGGCGGCGC-GCTCGG TTTTCTGCTCGGGGG TERM 1008 1065479 - 1065497 + G 83 -16 -3.60151 | TGGCGTTCGGCTTTC TCGCCGGC CCG GCCGGCGA TTATGATTTCGCCGC RPE_0952 1064923 - 1066941 + | hydrogenase 4 subunit B RPE_0953 1066932 - 1067891 + | respiratory-chain NADH dehydrogenase, subunit 1 TERM 1009 1068392 - 1068376 - g 75 -9.3 -4.07885 | CATGTCGCTGGAAAA CGGCCTG GTG CTGGCCG CGACCGGCGCCAAGG RPE_0954 1067891 - 1068553 + | hypothetical protein TERM 1010 1068839 - 1068854 + G 70 -11.8 -3.38326 | overlap 1068848 ACGAGCTGGAGACCG GCCGGC TGAC GCCGGC TTACTTGCGGTTCTA TERM 1011 1069770 - 1069789 + G 91 -9.2 -4.78753 | overlap 1069767 GAGCTCCACCTTCGC GCGGCAGC CGCT GCTGGCGC TTTTGTTGGTGTTCG RPE_0955 1068550 - 1070001 + | hydrogenase 4 subunit F TERM 1012 1070383 - 1070424 + G 75 -4.9 -4.59773 | gap 1 GGCCTGCGCTATCCG CTCGGCGATCGCGCGCCGGC CGC GCCGCCGCG-GGCCTATGAG TTTTTGCCGGTGGAA RPE_0956 1070014 - 1071522 + | NADH-ubiquinone oxidoreductase, chain 49kDa RPE_0957 1071529 - 1072050 + | NADH ubiquinone oxidoreductase, 20 kDa subunit TERM 1013 1072408 - 1072428 + G 76 -8.2 -4.1899 | overlap 1072369 ACCGCTTAATTGGCG CGACCGGG AGCGG CCCGATCG TTTTCAATGGCATGC RPE_0958 1072197 - 1074242 + | outer membrane autotransporter RPE_0959 1074792 - 1074418 - | hypothetical protein TERM 1014 1075471 - 1075504 + G 74 -12.3 -3.61715 | overlap 1075472 CGGTACCGGCGTCCT GGCGACGATCGGCGC GGTG GCGCCGTTCGTCGGA TTGTTCGGCACGGTG TERM 1015 1075472 - 1075503 + G 75 -15.8 -2.76815 | overlap 1075471 GGTACCGGCGTCCTG GCGACGATCGGCGC GGTG GCGCCGTTCGTCGG ATTGTTCGGCACGGT RPE_0960 1074989 - 1075783 + | MotA/TolQ/ExbB proton channel RPE_0961 1075788 - 1076231 + | biopolymer transport protein ExbD/TolR RPE_0962 1076228 - 1077088 + | TonB family protein RPE_0963 1077313 - 1077465 + | hypothetical protein RPE_0964 1077692 - 1077967 + | hypothetical protein TERM 1016 1079237 - 1079227 - g 83 -2.4 -5.18726 | GCTCTACAATAAAAA CGAC AAA GGCG AACTGGTTTATCAGG fliF 1078142 - 1079749 + | flagellar MS-ring protein fliG 1079757 - 1080845 + | flagellar motor switch protein G fliH 1080845 - 1081489 + | flagellar assembly protein H RPE_0968 1081493 - 1081843 + | flagellar motor switch protein TERM 1017 1082841 - 1082821 - g 90 -3.9 -5.41143 | overlap 1082823 1082824 CATTTTGCAAAAAAA TACGCCG ACGCCAA CGGCGTG CCGCTGCGGCCGATC TERM 1018 1082844 - 1082823 - g 73 -6.5 -4.34482 | gap 1, overlap 1082821 1082824 TTTTGCAAAAAAATA CGCCGACGCC AAC GGCGT-GCCG CTGCGGCCGATCGCG TERM 1019 1082946 - 1082922 - g 72 -7.2 -4.19238 | gap 1, opp_overlap 1082942 CCGCGAACTCGAAAA CACCATGCACC GCGC GGTGC-TGATG GCGTCTGGCGACGAG TERM 1020 1083052 - 1083017 - g 70 -13.3 -3.02511 | TCGACCTCGCCAAGA CGGCGCCG-GCGGTGGC GCAC GCCAC-GCTCGCCGCCG AGCAGGTGACCCGCG RPE_0969 1081897 - 1083279 + | two component, sigma54 specific, Fis family transcriptional regulator RPE_0970 1083649 - 1083494 - | hypothetical protein TERM 1021 1083694 - 1083668 - R 76 -7.2 -4.30719 | GCGTTCCAGAACAAA CGGCCGCCAA GGGTGGA TCGCCGGCCG GTGAAACCAAACCCG RPE_0971 1084114 - 1083836 - | hypothetical protein TERM 1022 1084162 - 1084143 - R 75 -15 -2.71144 | opp_overlap 1084142 1084141 1084159 CATTGCGCCGAAGGA CGGCGTCG CGTG CGACGCCG CGTTGATCGCTGCCC RPE_0972 1084400 - 1084182 - | hypothetical protein RPE_0973 1084753 - 1084490 - | hypothetical protein RPE_0974 1085043 - 1085852 + | transglutaminase domain-containing protein TERM 1023 1086019 - 1086058 + G 70 -10.6 -3.53012 | gap 1, opp_overlap 1086019 1086018 1086012, overlap 1086019 1086027 GGCTGAAAGCCAAAC CCGGCCGCGCCGGCACGCC GCC GGTGTTCCGGC-TGTTCGG TTTCGCCGGCACCGG TERM 1024 1086027 - 1086051 + G 72 -13.5 -3.20349 | opp_overlap 1086019 1086018 1086012, overlap 1086019 1086019 GCCAAACCCGGCCGC GCCGGCACGCC GCC GGTGTTCCGGC TGTTCGGTTTCGCCG TERM 1025 1086383 - 1086404 + G 70 -10.1 -3.63569 | gap 1 CGATCCGGCGCAGTT GCCGCCGATC CAG GG-CGGCGGC TTCTTCACCAATTGC RPE_0975 1085952 - 1087061 + | exodeoxyribonuclease V TERM 1026 1087071 - 1087125 + T 74 -14.9 -2.57132 | gap 1, overlap 1087060 1087070 GTGTAGTTGCCGGGC AACGTCATTCCGGG-GCGCGCGCAGC GTGA GCTGCGCGCGAACCCGGAATCCCGAC ATTGTGGCCAAGAGA RPE_0976 1087967 - 1087227 - | methyltransferase type 12 TERM 1027 1088053 - 1088030 - H 74 -9.6 -3.91716 | gap 1, opp_overlap 1088030, overlap 1088031 TGACCGGCGAAACAA CTTCCGCGCGC AGG GCG-GCGGAAA TGCTGTGAATCCGGT RPE_0977 1088125 - 1088646 + | Ferritin, Dps family protein TERM 1028 1089682 - 1089661 - T 93 -13.7 -4.18762 | gap 1 AACGTTCACCCAAAA CCCG-GGCGC CAC GCGCCGCGGG AAGGCGAAGGCTTGT RPE_0978 1090807 - 1090283 - | double-stranded beta helix domain-containing protein RPE_0979 1092219 - 1091029 - | carbamoyl phosphate synthase small subunit TERM 1029 1091194 - 1091218 + g 75 -14.3 -3.28712 | CGAGACGTGGGTCTG GGTGACGTTGC CGG GCAGCGTCGCC TTGTCGAGCGCAAAG TERM 1030 1091506 - 1091467 - G 74 -2.6 -4.82901 | overlap 1091469 GCCGTTCGACAAAAA CACGCCGTCGGGCTTC AGCGCCAG GATGTCCGCCGACGAG GTGGTGGCCGGAACC RPE_0980 1092483 - 1092938 + | GatB/Yqey domain-containing protein RPE_0981 1094425 - 1093082 - | phenylacetate--CoA ligase TERM 1031 1093962 - 1093915 - G 74 -12.6 -3.53012 | gap 1, overlap 1093882 1093916 TGCCGCCGCCCGAAA CCGGCAC-CACGGTGGCGCCGAG CCG CTCGGCGCCGTAATGCGCGCCGA GACCGCCGGTGAACA TERM 1032 1094407 - 1094389 - G 72 -5.8 -4.4261 | overlap 1094390 GTTCGAACATGAAAA CCGGCGTG TTC CGCGCCGC GGTCTGAGCTTGTCC TERM 1033 1094497 - 1094471 - R 71 -13 -2.96899 | gap 1, overlap 1094466 CCCCAACGAACGACA GCGCCGCAGGC TCGATC GCC-GCGGCGC GAGAAATGGATCAGG RPE_0982 1095062 - 1094508 - | pyruvate ferredoxin/flavodoxin oxidoreductase RPE_0983 1095901 - 1095062 - | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 1034 1095465 - 1095518 + g 70 -10.2 -3.63515 | gap 1, overlap 1095467 1095469 GTGGTGGTGGTGAGC CG-GGTCTCCGACGTGGTCGGCGAC ACCTG GCCGCCGGTCATGCCGTAGATCTCG TTGTTGAGCATCAGG RPE_0984 1097061 - 1095901 - | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha RPE_0985 1097996 - 1097058 - | pyruvate ferredoxin/flavodoxin oxidoreductase RPE_0986 1099810 - 1097993 - | thiamine pyrophosphate binding domain-containing protein TERM 1035 1098369 - 1098393 + g 72 -14.2 -3.04144 | overlap 1098368 1098365 GCCTCGTAGTCGACC CGCGGCGCGG GCTCG CCGCGCAGCG TCTTGCCCGTGCCGG TERM 1036 1098530 - 1098551 + g 72 -8.7 -4.03234 | CAGGAAGGTGCTGTC GCCGATGGT GGCG ACGATCGGC TTTGTCTCGCCGGCC TERM 1037 1099255 - 1099217 - G 72 -13.1 -3.14132 | GGTGTTCTCGACGAA GGCGCGCGGCGGC-AGCGC CGT GCGCTCGCCGA-GCGCGAC CGCGCTGCGGGTATG TERM 1038 1099571 - 1099601 + g 70 -3.9 -4.45544 | opp_overlap 1099571 1099574, overlap 1099572 GCGGCTTCCGGCAAA CGACGCGC-CGATCG CGA CG-TCGAGCGCGACC TTTTCATTGGTCGAC TERM 1039 1100697 - 1100735 + G 72 -12.9 -3.14211 | overlap 1100725 CTGATCCATCACTAT CGCCGCGTGCTGCTGCG CGATC CGCTGCTGCCCGAGGCG TTGCTGCCGCCCGAT RPE_0987 1100031 - 1100900 + | phenylacetic acid degradation operon negative regulatory protein PaaX TERM 1040 1101201 - 1101217 + G 72 -15.1 -2.71364 | CCGCGCGCCGACGCT GCGCCGC AAG GCGGCGC TGCTTGCCAAGGTGC TERM 1041 1101658 - 1101629 - g 100 -9.9 -4.96848 | opp_overlap 1101651, overlap 1101630 CGCCGGATACAAAAA GCCAGCACGGCGA TCAG TCGACGCGCTGGA AGATCAAGCGCTTCT TERM 1042 1101657 - 1101630 - g 77 -13.4 -3.57627 | opp_overlap 1101651, overlap 1101629 GCCGGATACAAAAAG CCAGCACGGCGA TCAG TCGACGCGCTGG AAGATCAAGCGCTTC RPE_0988 1100974 - 1101963 + | phenylacetate-CoA oxygenase subunit PaaA TERM 1043 1101994 - 1101971 - f 100 -18.2 -3.60296 | CAGCCTGAGTTGAAA CCTCTCCCCG CTTG CGGGGAGAGG TCGACCGGCGAAGCC TERM 1044 1102419 - 1102437 + G 73 -14.6 -2.88861 | opp_overlap 1102418 CGACCTTCTACGAAG TGCCCGAC GAA GTCGGGCA TATGTGACGCTCATG RPE_0989 1102157 - 1102444 + | phenylacetate-CoA oxygenase subunit PaaB TERM 1045 1102578 - 1102602 + F 84 -4.3 -5.14563 | overlap 1102579 TTGCTTCGCTTCGCT CGCAATGAC GGGGTGA GTCATTGCA TTTTTTGCTAACCAC RPE_0990 1102635 - 1103411 + | phenylacetate-CoA oxygenase, PaaI subunit RPE_0991 1103405 - 1103908 + | phenylacetate-CoA oxygenase, PaaJ subunit TERM 1046 1103951 - 1103994 + F 70 -11.6 -3.24411 | gap 1, opp_overlap 1103941, overlap 1103949 1103947 1103953 CCAACCTCGCTCCGT CATTCC-GGGGCGCGCGCCGC GCA GCGGCGGGCGAACCAGGAATC TCTCTTTGCCACAAT TERM 1047 1103953 - 1103992 + F 80 -14.2 -3.18571 | gap 1, opp_overlap 1103941, overlap 1103951 1103949 1103947 AACCTCGCTCCGTCA TTCC-GGGGCGCGCGCCGC GCA GCGGCGGGCGAACCAGGAA TCTCTCTTTGCCACA TERM 1048 1104061 - 1104009 - f 91 -17 -3.28712 | gap 1, overlap 1104010 CTCTCTTTGCCACAA TCTCGAGATTCCGGGTCTGCGCGCC GAGT GGCGCGCAT-CCCGGAATGACGAGG TGGAGCGTCACTGAG TERM 1049 1104060 - 1104010 - f 91 -20.5 -2.57132 | gap 1, overlap 1104009 TCTCTTTGCCACAAT CTCGAGATTCCGGGTCTGCGCGCC GAGT GGCGCGCAT-CCCGGAATGACGAG GTGGAGCGTCACTGA RPE_0992 1104098 - 1105180 + | phenylacetate-CoA oxygenase/reductase, PaaK subunit RPE_0993 1105522 - 1105211 - | ethyl tert-butyl ether degradation EthD RPE_0994 1107687 - 1105588 - | bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase TERM 1050 1106705 - 1106665 - G 86 -16.8 -3.30124 | gap 1 GGTCACTTTCGACAA CCGCTC-GCGCAACGCCGC GATC GCGGCGTCGAGCTGCGCGG CGGGCACCAGTGCGC TERM 1051 1106715 - 1106737 + g 81 -11.2 -4.08692 | GCGCGGCGGGCACCA GTGCGCGGCG GAT CGCGGTGCAC TTTTGGCCCGCCTTC TERM 1052 1107225 - 1107209 - G 72 -5.8 -4.37886 | overlap 1107211 TGACGGCCCACAAAA CTGCCG CCCTT CGACAG CGGCTCGACGCCGCC TERM 1053 1107387 - 1107409 + g 78 -6.3 -4.57569 | gap 1, opp_overlap 1107375, overlap 1107384 AGAGCTGATCCTTCC GCTCG-GCGA GATA TTGCGCGAGC TTTTTCAACAGCTCG TERM 1054 1107661 - 1107708 + g 100 -19.2 -3.06183 | opp_overlap 1107666 1107670, overlap 1107666 1107670 GAGGAGGCGAAGCCG ACGAAGCAATCCAGTGGCTCCG TGCA CGGTGCTCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 1055 1107703 - 1107666 - G 73 -14.1 -3.18681 | opp_overlap 1107661 1107666 1107670, overlap 1107670 GGCGAAGCCGACGAA GCAATCCAGTGGCTCCG TGCA CGGTGCTCCTGGATTGC TTCGCTTCGCTCGCA TERM 1056 1107666 - 1107703 + g 81 -16.3 -3.19192 | opp_overlap 1107666 1107670, overlap 1107661 1107670 GGCGAAGCCGACGAA GCAATCCAGTGGCTCCG TGCA CGGTGCTCCTGGATTGC TTCGCTTCGCTCGCA RPE_0995 1108414 - 1107776 - | TetR family transcriptional regulator TERM 1057 1107875 - 1107898 + g 78 -15.2 -3.33696 | CACCAGCTCGGCATA GTCGGCGCGG GTCA CCGCGCCGCC TTCCTTGAACCAGAG RPE_0996 1109768 - 1108434 - | phenylacetate-CoA ligase RPE_0997 1110258 - 1109776 - | phenylacetic acid degradation protein PaaD TERM 1058 1110261 - 1110287 + r 72 -4.2 -4.56597 | overlap 1110262 TGACGGCATCCATCA GGCTCTCCCGAC GAA GCGGGGAGGGCG TTTTTCGAAGAAGGC RPE_0998 1111043 - 1110258 - | enoyl-CoA hydratase RPE_0999 1111240 - 1112421 + | extracellular ligand-binding receptor TERM 1059 1112440 - 1112475 + F 86 -14.1 -3.86202 | gap 1 TTTTTTCTCGCATTC GACGT-CATGGCCGGG CTCGT CCCGGCCATCCACGTC TTTGGTCTAGTGAGG RPE_1000 1112596 - 1113471 + | inner-membrane translocator TERM 1060 1113730 - 1113770 + G 74 -10.4 -3.78775 | GGCCTGCATTCGCTG GCG-GCGGTGCTGGTCGGCG CGG CGCTG-TCGGCGCTGCTCGC TTTCCTGGTCGGCAG RPE_1001 1113475 - 1114419 + | inner-membrane translocator RPE_1002 1114416 - 1115198 + | ABC transporter related TERM 1061 1115431 - 1115449 + G 79 -6.7 -4.57569 | gap 1 CGCGGCATCCTGCAA TC-GCCGG AAGG CCGGCAGA TTTTTGGGCCGCTCA TERM 1062 1115778 - 1115766 - g 70 -10.5 -3.65812 | GCTGGTCGAACAGAA CGCCG CCG CGGCG CTGGAGATCGCCGAT RPE_1003 1115191 - 1115895 + | ABC transporter related RPE_1004 1116023 - 1117045 + | nonspecific acid phosphatase precursor RPE_1005 1118078 - 1117413 - | two component LuxR family transcriptional regulator RPE_1006 1119668 - 1118274 - | putative signal transduction histidine kinase TERM 1063 1123103 - 1123065 - g 79 -16.6 -3.07113 | GACGACCGGATCGAA TCCGGCGCGGGCGTCGAC CTG GTCAACGGCGGCGCCGGC AACGACATCATCACC TERM 1064 1123218 - 1123274 + G 72 -13.5 -3.21099 | opp_overlap 1123220 1123246 1123251, overlap 1123190 1123203 1123266 GGCGGCTCCGGCAAG GACGTCGTCTTCGTCGGCGTCGACGAC ACC GAAGTGTTCGCCGGCGAAGGCGACGAC TTCGTGCTCGGCGGC TERM 1065 1128616 - 1128669 + G 72 -15.1 -2.74192 | gap 1, overlap 1128603 1128614 1128668 ATGCCGGCGCCGACG CGATCTCGGCCGGCGACGGCGCCGAC TTC GTCAACGCCGGTGCGGGCCGCGA-CG TGGTGTTCGCCGGTG TERM 1066 1128781 - 1128829 + G 76 -15.9 -2.82516 | opp_overlap 1128785 1128805, overlap 1128788 AGGGCAACGACATGA TCAATGCCGGTGCCGGCGATGAC ACC GTTTTCGGCGGCGCCGGCAGCGA TCTGCTGGTCGCCGA TERM 1067 1128825 - 1128785 - g 80 -15.3 -3.26433 | opp_overlap 1128781 1128788, overlap 1128805 CAACGACATGATCAA TGCCGGTGCCGGCGATGAC ACC GTTTTCGGCGGCGCCGGCA GCGATCTGCTGGTCG RPE_1007 1120059 - 1129400 + | heme peroxidase TERM 1068 1129815 - 1129789 - g 85 -8.1 -4.77165 | gap 2, overlap 1129790 1129791 GCCTCGACAAGAAAA TCGCG-C-CGATG GCG CATCGGGTCGCGA TCGACATGCCGCGGT RPE_1008 1129494 - 1131245 + | type I secretion system ATPase RPE_1009 1131242 - 1133446 + | RTX toxins and related Ca2+-binding proteins-like protein TERM 1069 1133696 - 1133686 - g 72 -6.8 -4.29432 | GAAAGTCGATCAAAA CCTC AAG GAGG TTCAGCACCGCGACG TERM 1070 1133730 - 1133748 + G 70 -8.8 -3.90112 | opp_overlap 1133727 GCATTGTGAAGACGC TCGCCGTG CGC CAGGGCGA TTTCGTTCAGCAAGG RPE_1010 1133468 - 1134826 + | HlyD family type I secretion membrane fusion protein RPE_1011 1135061 - 1135324 + | hypothetical protein RPE_1012 1135499 - 1135801 + | hypothetical protein RPE_1013 1137051 - 1136248 - | hypothetical protein TERM 1071 1137424 - 1137393 - g 70 -11.6 -3.43203 | gap 1, overlap 1137408 CGAGGACAATACGAA GCCGCCATCCGAAGA CGA TCGCCGGATGG-GGC CGGTGCCGCCAGCCA RPE_1014 1137151 - 1137549 + | transposase IS3/IS911 family protein TERM 1072 1137753 - 1137769 + G 77 -7.2 -4.53303 | TGTCTGTTCACGAAG CGGCTG GAGCG CGGCCG TTTTCTGTGGCCGTC RPE_1015 1137546 - 1137893 + | IS66 Orf2 family protein TERM 1073 1138282 - 1138260 - g 72 -5.4 -4.4078 | GGCCGCCAAGGAAAA GCGTGCACAG GCT CCACGCCCGC CCCGACGCCCGCTGC RPE_1016 1137967 - 1139553 + | transposase IS66 RPE_1017 1147383 - 1139971 - | hypothetical protein TERM 1074 1140245 - 1140222 - G 81 -3.8 -5.00616 | gap 1, overlap 1140207 CTTCGCCCGAAAAAA GCAGGCGAAAC TTT GCTAC-CCTGC CGCGGTAATCCGCTC TERM 1075 1141196 - 1141182 - G 77 -3.5 -4.80453 | overlap 1141183 1141184 GCAGTAGAAAACAAA GCTGG TCGTG CCAAC CACGAGACTGATCAA RPE_1018 1148500 - 1148868 + | hypothetical protein TERM 1076 1150636 - 1150661 + G 100 -17.5 -4.57569 | CGATGCACTTGACGC CGCCCGCGGCG GTTC CGCCGAGGGCG TTTTTGCACAGCTCA TERM 1077 1153998 - 1154014 + G 78 -6.5 -4.60255 | TTGGGTTGAAGAGCC CTGACGC CAT GCATCAG TTTTTGAAAGATTAT RPE_1019 1150352 - 1154368 + | hypothetical protein TERM 1078 1155359 - 1155337 - g 86 -6.9 -4.93316 | CAAGAACATCAAAAA GAGTCGCGA ATGCG TCGCGGCCC TGAGCGAAACGATAA RPE_1020 1154432 - 1155658 + | hypothetical protein RPE_1021 1155655 - 1156650 + | hypothetical protein RPE_1022 1158511 - 1156790 - | hypothetical protein TERM 1079 1158137 - 1158124 - G 70 -2.3 -4.63218 | CCTCGCGGAAGAAAA TACGG TCCT CCGAA TGAGGAAGAATCCTG TERM 1080 1158958 - 1158971 + r 88 -8.1 -4.71426 | TCGGCGGACCGGAGC CACCG GGAG CGGTG TTTTATTACTCGCGC RPE_1024 1160027 - 1159758 - | conjugal transfer TraD family protein RPE_1025 1160355 - 1160029 - | hypothetical protein RPE_1026 1160526 - 1163546 + | MobA/MobL protein RPE_1027 1163665 - 1163880 + | phage transcriptional regulator, AlpA RPE_1028 1164133 - 1164348 + | hypothetical protein TERM 1081 1164743 - 1164759 + G 78 -6.5 -4.67982 | overlap 1164742 ATCGTCCGGTGATCG CGGCG TCGACAT CGCCG TTTTCTTCGATAAGG RPE_1029 1164531 - 1165619 + | hypothetical protein RPE_1030 1165607 - 1166107 + | putative threonine efflux protein TERM 1082 1167645 - 1167618 - g 71 -3.4 -4.62783 | gap 1 GATCGACGGCAAAAA CCGGACGTCTTTT GGC AAGGGAC-TCCGG GCGATTACGCAATCC RPE_1031 1166104 - 1167984 + | hypothetical protein TERM 1083 1168645 - 1168610 - g 73 -11 -3.72576 | opp_overlap 1168631 1168635 CGCTGGTTCAGGAAA GCCTCGCCACCGCGGT GCGG ATCGAGGCGGCCAGGC CGGCTGATTTCACGC RPE_1032 1168225 - 1168902 + | transposase, IS4 TERM 1084 1169260 - 1169218 - g 83 -14.8 -3.70902 | TCCCCGAGATCGAAA CCAGCGTCGGAGCCAACCTT TGC AAGGTCGTCACCGATGCCGG CTATCGCGGCCACAA RPE_1033 1168899 - 1169579 + | transposase, IS4 family protein RPE_1034 1172087 - 1169721 - | hypothetical protein TERM 1085 1169973 - 1169984 + g 70 -3.6 -4.46073 | GCGCATGTAAGTGTC GCGG TCGA TCGC TTTCTTATCTTCCAG TERM 1086 1170800 - 1170819 + g 70 -4.2 -4.45544 | opp_overlap 1170800, overlap 1170794 CCTGTCGGAACGCAA GAAGCCGC TTGC GCGATTTC TTTTCCTTGCTGCGA TERM 1087 1172345 - 1172375 + G 73 -3.9 -4.63218 | TGACACACCGGTCAA GGCGGCAGCTGC-GC GAA GCTGGAGCA-CCGCC TTTTCTTCAACCGAC RPE_1035 1172172 - 1172639 + | hypothetical protein RPE_1036 1172778 - 1174406 + | recombinase RPE_1037 1174899 - 1174540 - | hypothetical protein RPE_1038 1175580 - 1174942 - | phosphatidylethanolamine N-methyltransferase TERM 1088 1174988 - 1174973 - G 77 -5.4 -4.68593 | gap 1, opp_overlap 1174980 CGGATCAGCGAAAAA TGCC-CC ATC GGCGGCA TCGGCCGGCGCTCTT TERM 1089 1175601 - 1175656 + r 85 -14.5 -3.61398 | gap 2, overlap 1175604 1175636 1175638 GCCCCGATGAATCCT AGCCGCGCACGCCCGCCGCCAGCGGCC GGTT GGCCGC-GGCCGC-GCCGCGCGCGTCC TTGTTCGCCGCGCGC TERM 1090 1175604 - 1175653 + r 91 -19.2 -2.93073 | gap 2, overlap 1175601 1175636 1175638 CCGATGAATCCTAGC CGCGCACGCCCGCCGCCAGCGGCC GGTT GGCCGC-GGCCGC-GCCGCGCGCG TCCTTGTTCGCCGCG trmU 1176858 - 1175599 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1091 1175636 - 1175683 + g 100 -23.4 -3.14132 | gap 1, overlap 1175604 1175601 1175638 AGCGGCCGGTTGGCC GCG-GCCGCGCCGCGCGCGTC CTTGTTC GCCGCGCGCGGCGCGGCACTC TTGATGAAACCGCCG TERM 1092 1175638 - 1175681 + g 100 -24.6 -3.13403 | gap 1, overlap 1175604 1175601 1175636 CGGCCGGTTGGCCGC G-GCCGCGCCGCGCGCGTC CTTGTTC GCCGCGCGCGGCGCGGCAC TCTTGATGAAACCGC TERM 1093 1177188 - 1177243 + G 78 -14.6 -3.29511 | opp_overlap 1177162 1177222, overlap 1177189 1177191 CGGGATCGCACCGCG TCGTCGGAGAGTTTCGCCGCGCTGGT CGAG ACCAGCGGGTCGAACCGCGCCGATGG TTCTGCCGGCATCGA TERM 1094 1177189 - 1177242 + G 74 -15.9 -2.57564 | opp_overlap 1177162 1177222, overlap 1177188 1177191 GGGATCGCACCGCGT CGTCGGAGAGTTTCGCCGCGCTGGT CGAG ACCAGCGGGTCGAACCGCGCCGATG GTTCTGCCGGCATCG TERM 1095 1177191 - 1177240 + G 73 -14.9 -2.82742 | opp_overlap 1177222, overlap 1177189 1177188 GATCGCACCGCGTCG TCGGAGAGTTTCGCCGCGCTGGT CGAG ACCAGCGGGTCGAACCGCGCCGA TGGTTCTGCCGGCAT RPE_1040 1177107 - 1178651 + | flagellar hook-length control protein RPE_1041 1178661 - 1179392 + | flagellar hook capping protein RPE_1042 1180222 - 1179413 - | lytic murein transglycosylase TERM 1096 1180182 - 1180143 - G 100 -21.4 -4.11751 | gap 1 ACGAAGCCCTGAAAA TCGCCGCCGCAGCGCGCCG CCT CGGCGGGC-GCGGCGGTGA GCAGAGCAAGACCGA TERM 1097 1180264 - 1180274 + H 71 -8.2 -3.9009 | overlap 1180262 GACGAGGGGGCATGG CGGC GAC GCCG TTTGTAGCATACCTT RPE_1043 1180343 - 1180708 + | hypothetical protein RPE_1044 1180852 - 1181211 + | hypothetical protein TERM 1098 1181416 - 1181445 + G 85 -10.5 -4.2528 | overlap 1181417 CCGGCACGGGTCATC CGCGGCGCGCGCC GCGC GGCGATCGCCGCC TTTCTTGGCTTGGCG TERM 1099 1181417 - 1181444 + G 73 -14 -3.14686 | overlap 1181416 CGGCACGGGTCATCC GCGGCGCGCGCC GCGC GGCGATCGCCGC CTTTCTTGGCTTGGC TERM 1100 1181553 - 1181565 + G 71 -9.1 -3.85698 | GATCGCGCTGGGGCT GGCGA ATG TCGCC TTTGTCGAGGCGACC RPE_1045 1181218 - 1181709 + | hypothetical protein TERM 1101 1182078 - 1182099 + T 100 -13.7 -4.25848 | gap 1 GCGCAGTTGCCCGTT CCCGCGGCGC AAA GCGCC-CGGG TTTTGCTGAAACGTT TERM 1102 1182619 - 1182659 + T 93 -21.2 -2.87564 | gap 1 AATTTCACGGCGTCA TTCCGGG-GCGTCCGCCGC GCCA GCGGCGGGCGAACCCGGAA TCTCTGCGCCGCTGA TERM 1103 1183001 - 1183056 + T 70 -13.1 -2.90392 | gap 1, overlap 1182991 GCATCCCGCCAGGAC CGGCGTGGGGGTTGCTCACTGCCCGC TCTAC GCGCGCCG-GAGCGTCAGCCACGCCG TGTCATTGCGGGCTC RPE_1046 1183432 - 1183070 - | cupin 2 domain-containing protein RPE_1047 1184246 - 1183548 - | cytochrome c553-like protein TERM 1104 1183739 - 1183751 + g 75 -6.9 -4.3739 | overlap 1183732 GACGCTGGCCGGCGA GCCGC GCG GTGGC TTTTGTGCCGGCGTA TERM 1105 1183974 - 1183941 - G 78 -15.3 -3.14344 | GATCGGCCGCATCAA GGCGTTCTGCCGCAC GCCA GCGCGGAAGAACACC AACTGCCACTGCACG TERM 1106 1184374 - 1184394 + r 91 -16.9 -3.33696 | CCCGGCCTCCGCTTC GCGCCATGC TTT GCATGGCGC TTCGTTCGGCCGACC RPE_1048 1185708 - 1184455 - | putative L-sorbosone dehydrogenase TERM 1107 1185427 - 1185379 - G 72 -13 -3.16055 | opp_overlap 1185425, overlap 1185423 GAAACTGCCCACGAA CAGCGTGCCGTTGTCGCCCCAG GCCAT CTGCCGCGCCGACAGCACGCCG GGGGCATAGACCTCG RPE_1049 1186084 - 1186503 + | hypothetical protein RPE_1050 1186887 - 1186516 - | hypothetical protein TERM 1108 1186976 - 1186962 - R 74 -5.6 -4.49981 | opp_overlap 1186971 GAGACTAGCAGAAAA TCTCCG GAT CGGGGA TGATCGAAGCATGAG RPE_1051 1188882 - 1188646 - | transposase TERM 1109 1189101 - 1189067 - R 88 -17.2 -3.05596 | overlap 1189072 GATGGGCTGAGCGAA GCGAACCCCATCGC GCCGGTG GCGATGGGGATCGC AAAAGCGCTCGGCCC TERM 1110 1189096 - 1189072 - R 73 -12.9 -3.19192 | overlap 1189067 GCTGAGCGAAGCGAA CCCCATCGC GCCGGTG GCGATGGGG ATCGCAAAAGCGCTC RPE_1052 1190875 - 1189127 - | integrase catalytic subunit TERM 1111 1189549 - 1189573 + g 93 -18.5 -3.32022 | CCCCGGCCTCCGCGC GCGTCCGGCGC TTC GCGCCGGTCGC TTGCTCTGTGCAACC TERM 1112 1189667 - 1189723 + g 100 -24.8 -3.84451 | gap 2, overlap 1189668 TTCGGCGTCTGCTGT TGAGGCTGTGGGCCCTTGTGGGCAACGC GCA GCGTTGTCCACAA-G-TCCACAGCCTCG TTTGGCTTTGCGCAA TERM 1113 1189668 - 1189722 + g 100 -26.1 -2.90349 | gap 2, overlap 1189667 TCGGCGTCTGCTGTT GAGGCTGTGGGCCCTTGTGGGCAACGC GCA GCGTTGTCCACAA-G-TCCACAGCCTC GTTTGGCTTTGCGCA TERM 1114 1190000 - 1190014 + g 71 -9.2 -3.8591 | AGTATCGTTGCCCAG CGCCTG ATG CGGGCG TTCTTCGTTGTAGAG TERM 1115 1190670 - 1190648 - G 72 -13.4 -3.08813 | opp_overlap 1190646 1190644 1190648 GCGTACCGCAAGACA TCGCTCCGCC AGC GGCGCAGCGA TCGCTTGTGGATGGG TERM 1116 1192253 - 1192233 - R 100 -9.7 -5.1356 | GCGGATCAACAAAAA TGGCCGG GATTGGG CCGGCCA TTGCAGCCCGTAGCC RPE_1054 1192640 - 1192341 - | hypothetical protein TERM 1117 1192668 - 1192708 + r 70 -11.8 -3.21064 | gap 1, opp_overlap 1192665, overlap 1192671 1192681 GGCTTCATCACACTT GGAAGGTGGGC-ACGGCGC AAGC GCGCCTTTGCCCACCCTAC TGTCTTAGTTATCCA RPE_1055 1194827 - 1192713 - | RNA polymerase sigma factor RpoD TERM 1118 1194116 - 1194151 + g 83 -15.4 -3.57144 | gap 1, overlap 1194142 1194143 GCTGCGGCGGCGCCG CCGGCG-GGGCCGCGAC GGC GTCGGGGTCCTCGCTGG TTTCGCCCTCGGGGG TERM 1119 1194928 - 1194905 - R 81 -13.8 -3.57263 | ATCTCGACGCGGAAA GGGCGGCGCA CGAC CGCGCCACCC CAAAACTCAATCTTG dnaG 1197159 - 1195093 - | DNA primase TERM 1120 1195797 - 1195775 - G 88 -10.4 -4.36914 | overlap 1195777 CCGCGCGGGACAAAA CCGCCCGGCG AAT CGCCGCGCCG GCCCTGGAAATTGCG TERM 1121 1196144 - 1196160 + g 72 -5 -4.57341 | opp_overlap 1196133 1196129 1196130, overlap 1196156 GGCAGCGCCAGGTCT GCCGCG CGCCA CGCCGC TTTTTGGCCGGCCTT RPE_1057 1197518 - 1197249 - | hypothetical protein RPE_1058 1197979 - 1197584 - | hypothetical protein TERM 1122 1197715 - 1197741 + g 71 -15 -2.53715 | opp_overlap 1197711, overlap 1197714 CGCGAATGAACTCGT GCGGCGGCGCGG CTC CCTCGCCGCAGC CTTCATAGTCGTCGA TERM 1123 1198242 - 1198279 + G 74 -7.5 -4.1891 | gap 1, overlap 1198241 1198267 TCGATCCCAGCCTGC CGCCG-GTGATCGAGCGC CAT GCGCAGGGCCGCTCGGCG TTTCTGTTCACCGGC RPE_1059 1198163 - 1199002 + | N-formylglutamate amidohydrolase TERM 1124 1199080 - 1199022 - T 71 -13.7 -2.60813 | gap 1 CACCCGTCGAAACAG CTGCTGCGTCATCCTGAGGCGCGCGCCG TCTT CGGCGCGCCTCGAAGGATGG-GCCGCAG CTACCGAGTCGCCGT clpS 1199641 - 1199336 - | ATP-dependent Clp protease adaptor RPE_1061 1199834 - 1200691 + | hypothetical protein RPE_1062 1202109 - 1200874 - | RNA methyltransferase TERM 1125 1201210 - 1201242 + g 85 -15.5 -3.72576 | overlap 1201194 CAACGCGGCGATCGC GCTCGCCTCGCTGTC ATA GGCGGCGACGCGGGC TTTGGTGGCCAGCCG TERM 1126 1201316 - 1201340 + g 77 -12.1 -3.72576 | TTGGCCTTGCCGCAG CGCTCGCTGAC CAG GTCGGCCAGCG TTTCCTCGCCGGCGC TERM 1127 1201404 - 1201372 - G 91 -16.1 -3.85698 | overlap 1201373 GGTGGCCTGCAGAAA CGCGCCGGGCGGCAG CGT CAGCCGCGCGGCGCC GACCTGAATGGTCGG TERM 1128 1201403 - 1201373 - G 95 -19.6 -2.91276 | overlap 1201372 GTGGCCTGCAGAAAC GCGCCGGGCGGCAG CGT CAGCCGCGCGGCGC CGACCTGAATGGTCG RPE_1063 1203567 - 1202155 - | MATE efflux family protein TERM 1129 1202612 - 1202575 - G 89 -11.1 -4.1822 | gap 1, overlap 1202576 TCCGATCGCAACAAA GCCGGCGCGTCG-CGCCG CAA CGACGTCGTCGCGCCCGG TGGCGTGGCCGACCC TERM 1130 1202611 - 1202576 - G 76 -14.6 -3.10611 | gap 1, overlap 1202575 CCGATCGCAACAAAG CCGGCGCGTCG-CGCCG CAA CGACGTCGTCGCGCCCG GTGGCGTGGCCGACC TERM 1131 1203406 - 1203360 - G 70 -10.7 -3.61015 | gap 1, overlap 1203358 AAATCAAGAACAACA CCGTATGGGCGAGCGCCGCCGC GGCG ACGGCGGTG-TCGCCGAGCCGG CCGATCAGCGCGAGG RPE_1064 1204370 - 1203630 - | hemolysin A RPE_1065 1204955 - 1204383 - | nucleoside 2-deoxyribosyltransferase TERM 1132 1205206 - 1205221 + G 88 -10.4 -4.42653 | overlap 1205179 GAGTGGCCGCCGCGC GCGAGG ATAC CCTCGC TTTTCTGCGTGGCAT RPE_1066 1205016 - 1205786 + | hypothetical protein RPE_1067 1207728 - 1205806 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 1133 1206462 - 1206424 - G 75 -15.8 -2.70932 | opp_overlap 1206453 GGCGTTGTCGAACGA GCCGGCATGGGTGGCGCC GTC GGCGCCGACCAGCCCGGC GCGGTCGATCGCGAA RPE_1068 1208486 - 1208241 - | exodeoxyribonuclease VII small subunit RPE_1069 1209548 - 1208619 - | histone deacetylase superfamily protein RPE_1070 1211316 - 1209640 - | 5'-nucleotidase domain-containing protein TERM 1134 1210155 - 1210184 + g 70 -10.7 -3.55801 | gap 1, overlap 1210143 1210145 TGGTCGCCGCCAGAT GCGCG-TCGGCGAC GAT GTTGCCGAGCACGC TTTCGCCGGCTTCGT TERM 1135 1210681 - 1210665 - G 76 -15.1 -3.17075 | opp_overlap 1210667 CGTCGCGGAATTCAA GCCCGGC GAC GCCGGGC GGCGACACCAGTTTC TERM 1136 1210890 - 1210837 - G 95 -17.4 -3.85698 | gap 1, opp_overlap 1210847 CTTGGCGCCGAGAAA CGGATGCGGCCCG-CGGCAGCCATC GACGG GATGGCAGCCGCCGTTCTGCATCCG CAGCAGCTCGGTCCG TERM 1137 1210847 - 1210879 + g 80 -14.8 -3.35679 | opp_overlap 1210837 AGAAACGGATGCGGC CCGCGGCAGCCATC GACGG GATGGCAGCCGCCG TTCTGCATCCGCAGC RPE_1071 1211470 - 1211931 + | hypothetical protein TERM 1138 1212789 - 1212767 - g 70 -4.1 -4.56775 | overlap 1212769 1212771 1212787 ACGCCGCGTGAAAAA GTCATTCCG CTCAC CGAAATGGC GGAAGCCGAAAACAC TERM 1139 1213248 - 1213273 + G 73 -6.1 -4.39166 | gap 1, overlap 1213229 1213239 1213237 ATCTGGTCGCCCGGG CCGG-GCAGCCG GTC TGGCTGTATCGG TTTTCCTATGTCGCA TERM 1140 1213839 - 1213860 + G 81 -12.3 -3.84825 | gap 1 CGCCGCTCACCATCA CGCT-GCCCG ACC CGGGCAAGCG TTTCATGTCGATGCA TERM 1141 1214443 - 1214407 - g 86 -16.5 -3.62046 | opp_overlap 1214439, overlap 1214408 CTACTCGCTGAACAA TCTGACCGCGACGCCCG ATC CGGACGGCGCGATCAGC GTGCAATTCGGCGGT TERM 1142 1214442 - 1214408 - g 95 -20 -2.77013 | opp_overlap 1214439, overlap 1214407 TACTCGCTGAACAAT CTGACCGCGACGCCCG ATC CGGACGGCGCGATCAG CGTGCAATTCGGCGG RPE_1072 1212038 - 1214587 + | carboxylesterase, type B TERM 1143 1214597 - 1214653 + T 74 -11.7 -3.43619 | gap 2, opp_overlap 1214633 1214634, overlap 1214590 1214605 CGCTGACAGTGCGGC GCCGTCGCGGCGCT-ACGC-CTTCTTC CTTGC GAAGAACTGCGTGAACGCCGCAATGGC TTCCTTGGATTTCAT RPE_1073 1215370 - 1214609 - | enoyl-CoA hydratase/isomerase TERM 1144 1215384 - 1215406 + r 78 -4.7 -4.73297 | overlap 1215386 ATCGGTGTCCTCCTG AAGGCGGCG ATCTG CGCCGGCTG TTTGTTTGTTGGTTG RPE_1074 1217218 - 1215437 - | acyl-CoA dehydrogenase domain-containing protein TERM 1145 1215921 - 1215951 + g 73 -14.6 -2.80816 | opp_overlap 1215910 TAGATCGGCGTGATG CGGGCGTCGCGCAG ATG CTGCGCCGCGCCGG TCTCCTCGATGAACC TERM 1146 1217588 - 1217564 - H 74 -12.9 -3.27525 | overlap 1217559 CTTCCGCAAATGTAA CACACGCCTGT AAC ACAGGAGTGTG CACGGTGCGTGCGAT RPE_1075 1217650 - 1219584 + | phage integrase family protein RPE_1076 1220431 - 1220174 - | hypothetical protein TERM 1147 1220730 - 1220707 - R 75 -14 -3.01924 | opp_overlap 1220695, overlap 1220727 GATTGCTCTGTAACA GCACTTATGG ACAG CCATAAGTGC AGTACACAGGTTGAG TERM 1148 1221061 - 1221105 + r 74 -15 -2.57344 | gap 1, opp_overlap 1221059, overlap 1221060 GACCGCCGAATCATC GTCGA-CGCCGGCGTCGACGC GGCT GCGTTGGCGCGGGTGCTCGGC ATTCTAGGCCCGATC RPE_1078 1222656 - 1221109 - | recombinase RPE_1079 1223075 - 1223362 + | hypothetical protein RPE_1080 1223359 - 1223742 + | hypothetical protein RPE_1081 1225255 - 1224242 - | UDP-glucose 4-epimerase TERM 1149 1225411 - 1225368 - R 84 -15.3 -3.32936 | gap 1, overlap 1225366 1225364 GAAATGAACAATAGA GGC-GGCCTGGCGCGCGAGA GAGGT CCTTACGCGCCAGGCCTACC GGACCCTTTCGTTGC RPE_1082 1225918 - 1225595 - | hypothetical protein RPE_1083 1226762 - 1226010 - | metallophosphoesterase TERM 1150 1228183 - 1228205 + G 100 -11.2 -4.72272 | overlap 1228185 TGTTACGGTGAATTC GTCTCTCGCC AAC GGCGGGAGCC TTTTTAATCACGACA TERM 1151 1228450 - 1228480 + G 72 -13.2 -3.09635 | opp_overlap 1228445, overlap 1228460 1228464 1228468 CGCTGGACAATCGAC CGCGGCCGTGTTGT CGA GCATCGTGGCCGCG TTAGATGCTGGCAAT RPE_1084 1227143 - 1228918 + | peptidase C2, calpain RPE_1085 1229279 - 1231396 + | type I secretion system ATPase RPE_1086 1231399 - 1232835 + | HlyD family type I secretion membrane fusion protein TERM 1152 1232893 - 1232916 + F 91 -16.8 -3.65046 | opp_overlap 1232893 CTGCTGGTGGATACA GCGTCCCTCA GGCC TGAGGGACGC TTATTGGCATAAAAG TERM 1153 1232916 - 1232893 - f 83 -16.8 -2.87132 | opp_overlap 1232893 CTGCTGGTGGATACA GCGTCCCTCA GGCC TGAGGGACGC TTATTGGCATAAAAG RPE_1087 1233659 - 1233976 + | hypothetical protein RPE_1088 1235067 - 1234240 - | exopolysaccharide biosynthesis/transport protein, putative RPE_1089 1236425 - 1235103 - | lipopolysaccharide biosynthesis TERM 1154 1236538 - 1236518 - H 100 -18.3 -4.20368 | opp_overlap 1236513 CCAGCGTAACAGAAA GGGGGCTGC TCA GCAGCCCCC CTTAACAATCTCTTA RPE_1090 1237442 - 1238284 + | AAA ATPase RPE_1091 1238397 - 1238969 + | polysaccharide export protein RPE_1092 1239013 - 1240236 + | hypothetical protein RPE_1093 1241196 - 1240306 - | sugar transferase RPE_1094 1244454 - 1242247 - | TPR repeat-containing protein RPE_1095 1246286 - 1244664 - | eight transmembrane protein EpsH TERM 1155 1244748 - 1244733 - G 75 -4.6 -4.65895 | opp_overlap 1244742 CTCGGTAGGCAAAAA GCCCGA GAGG TTGGGC ACGACTTCATCTGTG TERM 1156 1246035 - 1246013 - G 75 -2.7 -4.7373 | gap 1, overlap 1246015 TCAGGCTACCAAAAA CGTGCATTGC TCCC GCAA-GCAGG ATCACAAGAACGCCG RPE_1096 1247416 - 1246283 - | anti-sigma-factor antagonist TERM 1157 1246768 - 1246778 + g 70 -8.2 -3.96148 | opp_overlap 1246754 1246753 1246766, overlap 1246753 CGCGCCGCAGGAAGT GCGG CGC CCGC TTTATCGTCCCCGCC TERM 1158 1247762 - 1247773 + r 75 -3 -4.88407 | overlap 1247770 GTCAATTGCCGCTTG TTGA AAGT TCAA TTTTTGATTAACTCG RPE_1097 1249088 - 1247883 - | glycosyl transferase family protein TERM 1159 1248123 - 1248110 - G 77 -3.7 -4.74103 | GCGTGAACCCAAAAA GGACG GAGC CGGCC GATATGATGGTGATT RPE_1098 1250233 - 1249262 - | NAD-dependent epimerase/dehydratase TERM 1160 1249842 - 1249896 + g 70 -6.5 -4.18018 | gap 3 CCCCAATATGTTTCG TCCTGCGGATGTAC-CG-CCG-GGTC GCCATA GACCTCGGACGTGGACGCCTGCAGGA TTTTGGCTCCGACGC RPE_1099 1251439 - 1250681 - | FkbM family methyltransferase TERM 1161 1251592 - 1251608 + r 77 -4.3 -4.90013 | overlap 1251594 CAACCTATTTCTATC CGCGGCA ACT TGCCGTA TTTTTGATTGAATTA TERM 1162 1251594 - 1251606 + r 76 -9.1 -4.06004 | overlap 1251592 ACCTATTTCTATCCG CGGCA ACT TGCCG TATTTTTGATTGAAT RPE_1100 1252446 - 1251718 - | glycosyl transferase family protein RPE_1101 1253846 - 1252644 - | glycosyl transferase, group 1 RPE_1102 1254890 - 1253859 - | glycosyl transferase family protein RPE_1103 1256016 - 1254880 - | glycosyl transferase, group 1 RPE_1104 1256372 - 1256896 + | hypothetical protein RPE_1105 1258311 - 1256962 - | hypothetical protein RPE_1106 1258568 - 1258849 + | hypothetical protein TERM 1163 1259206 - 1259228 + G 89 -2.6 -5.35815 | overlap 1259209 GGCGTCCTTCTTCTA TGTCTGGCAG CTG TTGCGAGTCA TTTTTGTTTACTATG RPE_1107 1258859 - 1260208 + | hypothetical protein TERM 1164 1260370 - 1260424 + F 93 -16 -3.76411 | gap 4, opp_overlap 1260369 1260370 GGTGTCGGTGACAAT GTGGCGC-T-TGCGGCCCTTGATG-CGC CTG GCGGCGTCAAGG-CCGCACGTGCGCCAC TTTCCGTGATTTTGA TERM 1165 1262147 - 1262133 - g 72 -7 -4.1891 | opp_overlap 1262133 1262134, overlap 1262134 CGTCTGGAAGACAAA CCCGCC GCC GTCGGG GGATTTCACCTGGAC RPE_1109 1260952 - 1263954 + | hypothetical protein RPE_1110 1264984 - 1263917 - | acyltransferase 3 RPE_1111 1266177 - 1265110 - | acyltransferase 3 RPE_1112 1267322 - 1266804 - | hypothetical protein RPE_1113 1268149 - 1268928 + | FkbM family methyltransferase TERM 1166 1269526 - 1269540 + G 72 -5.7 -4.42748 | GGCACGTTTCTTGGG GAGTC GGTTG GACTC TTGTTTTTGAAATGA RPE_1114 1269132 - 1270130 + | acyltransferase 3 RPE_1115 1271254 - 1270157 - | hypothetical protein TERM 1167 1270646 - 1270623 - G 78 -5.9 -4.63486 | overlap 1270625 AGGCTTTGAATAAAA GAGGCGAAC TTAGAT GCTCGCCGC CTATAGCCCGGCAGG RPE_1116 1272749 - 1271259 - | membrane bound O-acyl transferase, MBOAT family protein RPE_1117 1273431 - 1272943 - | integrase, catalytic region RPE_1118 1274121 - 1273723 - | hypothetical protein TERM 1168 1274550 - 1274595 + G 70 -8.9 -3.90112 | opp_overlap 1274535 1274581 GCCGCAACATTCAGT CGGGCGGGCCTGGCGTGCA GATTTCAA TGCACGTCAGGTCCCAACG TTTCGTTCGCAGCAA RPE_1119 1274506 - 1274772 + | hypothetical protein RPE_1120 1275093 - 1276400 + | UDP-glucose 6-dehydrogenase TERM 1169 1277649 - 1277617 - f 74 -6.2 -4.48221 | gap 1, overlap 1277618 1277619 1277641 CACGAACTTACAAAA CTCGGCCGGCTTCTC GTCG GAATACCCGGCCG-G AATCAATCGGAATCC TERM 1170 1279031 - 1279055 + F 72 -2 -4.68424 | TCGGGCCGCGATGGC CCGATTGACG ACGTC CAGCGATCGG TTTTTGAATCCCTTG RPE_1121 1279202 - 1279687 + | LuxR family transcriptional regulator RPE_1122 1280068 - 1279766 - | type IV pilus assembly PilZ RPE_1123 1281104 - 1280181 - | hypothetical protein TERM 1171 1281323 - 1281299 - R 71 -13.6 -2.65815 | overlap 1281315 TGGATAGTGACAGGA CGCTTCGCGC CGAAC ACGCGAAGCG CGCGAATCACAAAGT RPE_1124 1281818 - 1281447 - | hypothetical protein TERM 1172 1282898 - 1282888 - R 84 -2.4 -5.29445 | opp_overlap 1282896 TGCCAACAACAAAAA GCGC TCC GCGG CTGCAAAATAGCTGG TERM 1173 1283328 - 1283366 + r 76 -5.8 -4.61199 | overlap 1283329 GGCTCAAGTGCGACC AGGCGATAGCTCGCATCT GAG AGCTGAGAGCGTTCGCCC TTTTATATCTGAGCT TERM 1174 1283412 - 1283443 + r 75 -2.8 -4.87133 | gap 1, overlap 1283419 GCTCGAAGCCGATCA GCG-GCCTGACACCC GCA GAGTGGCGGTCTCGC TTTTGTTTCGCAAGT RPE_1125 1285092 - 1283506 - | ATPase RPE_1126 1285487 - 1285089 - | hypothetical protein TERM 1175 1285582 - 1285602 + r 76 -13.9 -3.13403 | opp_overlap 1285560, overlap 1285580 GGCGCACGCCTCACC GCGGCCGGC GTT GCCGGCCAC TCTTCGTCAGAGAAA TERM 1176 1286025 - 1285996 - R 71 -12.9 -3.05463 | gap 1, overlap 1285999 AGCGGTCGGATGCAA CCA-CGCCCTCCCG GAA CGAGAGGGCACTGG CGCAAGCCGACACAG TERM 1177 1286021 - 1285999 - R 72 -13.4 -2.75064 | overlap 1285996 GGTCGGATGCAACCA CGCCCTCCCG GAA CGAGAGGGCA CTGGCGCAAGCCGAC RPE_1127 1286880 - 1286101 - | hypothetical protein TERM 1178 1286858 - 1286814 - G 100 -19.4 -3.41878 | gap 1, opp_overlap 1286828, overlap 1286815 1286828 GTCCGTAAGCCAGAA CCGCCGCGGTCAAACTGCGAC CCGA GCCGCCGTTTGACC-CGGCGA CGAGATAGATTTGCA TERM 1179 1286857 - 1286815 - G 95 -20.7 -2.64912 | gap 1, opp_overlap 1286828, overlap 1286814 1286828 TCCGTAAGCCAGAAC CGCCGCGGTCAAACTGCGAC CCGA GCCGCCGTTTGACC-CGGCG ACGAGATAGATTTGC RPE_1128 1287460 - 1286891 - | ECF subfamily RNA polymerase sigma-24 factor RPE_1129 1288100 - 1287789 - | hypothetical protein RPE_1130 1288764 - 1288378 - | hypothetical protein TERM 1180 1289391 - 1289368 - H 75 -14 -3.01924 | opp_overlap 1289356, overlap 1289388 GATTGCTCTGTAACA GCACTTATGG ACAG CCATAAGTGC AGTACACAGGTTGAG TERM 1181 1289722 - 1289766 + G 71 -15 -2.57132 | gap 1, opp_overlap 1289720, overlap 1289721 GACCGCCGAATCATC GTCGA-CGCCGGCGTCGACGC GGCT GCGTTGGCGCGGGTGCTCGGC ATTCTGGAGCGGCGA RPE_1131 1289374 - 1289784 + | transposase IS3/IS911 family protein TERM 1182 1290226 - 1290195 - g 70 -11.6 -3.43203 | gap 1, overlap 1290210 CGAGGACAATACGAA GCCGCCATCCGAAGA CGA TCGCCGGATGG-GGC CGGTGCCGCCAGCCA RPE_1132 1289953 - 1290351 + | transposase IS3/IS911 family protein TERM 1183 1290555 - 1290571 + G 77 -7.2 -4.53303 | TGTCTGTTCACGAAG CGGCTG GAGCG CGGCCG TTTTCTGTGGCCGTC RPE_1133 1290348 - 1290695 + | IS66 Orf2 family protein TERM 1184 1291084 - 1291062 - g 72 -5.4 -4.4078 | GGCCGCCAAGGAAAA GCGTGCACAG GCT CCACGCCCGC CCCGACGCCCGCTGC RPE_1134 1290769 - 1292355 + | transposase IS66 RPE_1135 1292906 - 1292523 - | hypothetical protein RPE_1136 1293190 - 1292903 - | hypothetical protein RPE_1137 1293722 - 1293991 + | hypothetical protein RPE_1138 1296043 - 1294046 - | hypothetical protein TERM 1185 1296601 - 1296650 + r 84 -2.5 -5.31877 | overlap 1296579 1296602 GGGCTCCGCATGTCC GGTCGTGTGGGAGAGGCGAGGTC GCAA GACCCCCCCTATCCCGATCGCCA TTTTTTCTCCTCCCT RPE_1139 1299189 - 1298629 - | hypothetical protein RPE_1140 1299711 - 1299217 - | transposase, mutator type TERM 1186 1299931 - 1299950 + G 77 -4.2 -4.72986 | overlap 1299932 ATCCTGAGGTAGCGG TCCGGC TGATGCTT GCCGGG TTTTTGCTCGGGATA TERM 1187 1300621 - 1300633 + G 72 -6.9 -4.18018 | overlap 1300622 CGATTCGTAGCCCCG TGCCG CTG CGGCG TTTTCGCTACGACGC TERM 1188 1300698 - 1300717 + G 79 -8.6 -4.35483 | gap 1 ATCCTTCGGCCAACC CGACCGGTG AAG CAC-GGTCG TTTCTTCTACTCCCG TERM 1189 1301017 - 1301033 + G 100 -5 -5.59357 | overlap 1301002 1301018 CGGCTGTGAACCTCA AGCGGC TCGCC GCCGCA TTTTTTTGCTGTCCT TERM 1190 1301018 - 1301032 + G 70 -8.5 -3.93988 | overlap 1301002 1301017 GGCTGTGAACCTCAA GCGGC TCGCC GCCGC ATTTTTTTGCTGTCC RPE_1141 1299783 - 1301633 + | transposase, mutator type RPE_1142 1301661 - 1301900 + | hypothetical protein TERM 1191 1302561 - 1302534 - T 73 -6.8 -4.36903 | opp_overlap 1302534 TGCAGGAAATACAAA CGGCGGAGGGGG GAAG CCTCTTGCGCCG TTTTCTTTGCGATCT TERM 1192 1302534 - 1302561 + T 100 -11.2 -4.89521 | opp_overlap 1302534 TGCAGGAAATACAAA CGGCGGAGGGGG GAAG CCTCTTGCGCCG TTTTCTTTGCGATCT RPE_1143 1303372 - 1302584 - | hypothetical protein TERM 1193 1303737 - 1303768 + G 70 -13.6 -3.01712 | GGCCGCCCTCGATGC GCCGCCGCGGCCTC TGCC GAGGATGCAGCGGC TGTTGACCGAGCCCG RPE_1144 1303525 - 1303812 + | hypothetical protein RPE_1145 1303813 - 1304310 + | GCN5-related N-acetyltransferase TERM 1194 1304362 - 1304381 + T 76 -13.6 -3.13403 | overlap 1304360 CTCGCTGCAGCGCCC CCGCGATC ACCC GATCGCGG TCTTGATCACCGCCA fliI 1305699 - 1304368 - | flagellum-specific ATP synthase TERM 1195 1305641 - 1305621 - G 74 -12.5 -3.55444 | overlap 1305599 GCGCGACTTCGGAAA CGGTGCCGC CCA GCCGCACCG TCGGCACGTCCTTGT flgF 1306458 - 1305727 - | flagellar basal body rod protein FlgF RPE_1148 1307237 - 1306464 - | hypothetical protein RPE_1149 1307451 - 1308302 + | flagellar motor protein MotA RPE_1150 1308410 - 1309237 + | flagellar motor switch protein FliM RPE_1151 1309218 - 1309505 + | hypothetical protein RPE_1152 1309557 - 1309955 + | flagellar motor switch protein FliN RPE_1153 1309968 - 1311002 + | flagellar motor switch protein FliG TERM 1196 1311233 - 1311195 - g 100 -11.6 -4.37092 | overlap 1311196 ACCGCCCTCACAAAA GCGCTCGCCGGATTGATC GAC GATCCATCCGGCGTGAGG ATCAAGACCGGAGCG TERM 1197 1311232 - 1311196 - g 78 -15.1 -3.21934 | overlap 1311195 CCGCCCTCACAAAAG CGCTCGCCGGATTGATC GAC GATCCATCCGGCGTGAG GATCAAGACCGGAGC flhB 1311015 - 1312091 + | flagellar biosynthesis protein FlhB TERM 1198 1312502 - 1312486 - g 76 -15.1 -3.09492 | TCGCCAACGCCAATA CGCCCGG CTA CCGGGCG CAGGACATCGAGCCG flgB 1312368 - 1312772 + | flagellar basal body rod protein FlgB flgC 1312784 - 1313200 + | flagellar basal body rod protein FlgC fliE 1313203 - 1313523 + | flagellar hook-basal body protein FliE flgG 1313532 - 1314320 + | flagellar basal body rod protein FlgG TERM 1199 1314538 - 1314587 + G 70 -10 -3.62597 | gap 2, overlap 1314523 1314537 TGCCGGGGGTGGCGG CGTTTGTC-GGC-GACCGGCTGAC GGTT GTCGGCCGGACCGCGAGGCGAACG TTGTTGCCGGGTCGA flgA 1314336 - 1314821 + | flagellar basal body P-ring biosynthesis protein FlgA flgI 1314818 - 1315921 + | flagellar basal body P-ring protein TERM 1200 1316159 - 1316118 - g 72 -12.9 -3.16881 | gap 1 CATTGAGTTCACCAA GCCTGCCGCGACCGCCAAGC CTC GCCAGGCAGTCA-GGCCGGC GCCCAGCAATCCTCG RPE_1161 1315987 - 1316664 + | hypothetical protein flgH 1316661 - 1317365 + | flagellar basal body L-ring protein TERM 1201 1317415 - 1317401 - g 74 -5.6 -4.55721 | overlap 1317405 AAAGTCGAGAGAAAA CAGAGC AGC GCGCTG CAATGGGTGGCCGTG RPE_1163 1317365 - 1317856 + | flagellar basal body-associated protein FliL TERM 1202 1318116 - 1318128 + G 82 -4.8 -4.85433 | opp_overlap 1318094, overlap 1318094 1318093 GAACATCGTGATGAT CAGC CTGGC GCTG TTTTTGACTTTCTAT fliP 1317853 - 1318587 + | flagellar biosynthesis protein FliP RPE_1165 1318789 - 1319718 + | flagellin TERM 1203 1319742 - 1319774 + F 100 -19.9 -5.71712 | opp_overlap 1319743, overlap 1319743 1319745 TGAAAGTCGTAACGA ATGCGGCCGCGACCA TTC TGGTCGCGGCCGTAA TTTTTTTCTGTGGAC TERM 1204 1319773 - 1319743 - f 95 -21.2 -3.36581 | opp_overlap 1319742 1319743 1319745 GAAAGTCGTAACGAA TGCGGCCGCGACCA TTC TGGTCGCGGCCGTA ATTTTTTTCTGTGGA TERM 1205 1319743 - 1319773 + F 100 -23.4 -4.01943 | opp_overlap 1319743, overlap 1319742 1319745 GAAAGTCGTAACGAA TGCGGCCGCGACCA TTC TGGTCGCGGCCGTA ATTTTTTTCTGTGGA TERM 1206 1319745 - 1319771 + F 100 -23.8 -3.58446 | opp_overlap 1319743, overlap 1319743 1319742 AAGTCGTAACGAATG CGGCCGCGACCA TTC TGGTCGCGGCCG TAATTTTTTTCTGTG TERM 1207 1321315 - 1321292 - g 73 -12.4 -3.39895 | CTGCTTATGAATGAA GGCGCCGG ACTTCTCG CCGGCGCC GGCGGCGCGGCCGCT fliF 1319852 - 1321486 + | flagellar MS-ring protein RPE_1167 1321483 - 1322127 + | hypothetical protein motB 1322129 - 1323400 + | flagellar motor protein MotB RPE_1169 1323397 - 1324584 + | chemotaxis protein TERM 1208 1325193 - 1325177 - g 73 -13.7 -3.14132 | GCCGCTGCCGATCAA GGTCGCG GTG CGCGACC AGGAGACCCATTTCG RPE_1170 1324812 - 1325789 + | flagellar hook-length control protein RPE_1171 1325803 - 1326318 + | lytic transglycosylase, catalytic TERM 1209 1327298 - 1327287 - g 77 -5.8 -4.66163 | AGCGCCATCGAAAAA GTCG AAGT CGAC GGCGACGGCACCATG flgE 1326393 - 1327628 + | flagellar hook protein FlgE flgK 1327659 - 1329131 + | flagellar hook-associated protein FlgK TERM 1210 1330079 - 1330069 - g 84 -6.8 -4.74504 | opp_overlap 1330076, overlap 1330070 1330071 ACGGCAATGGAAAAA GTCG ATC CGAC GGAGGCGTCGGTTCG flgL 1329136 - 1330179 + | flagellar hook-associated protein FlgL TERM 1211 1330271 - 1330253 - g 73 -13.8 -3.11584 | overlap 1330249 1330251 ACATGATTGAAGACA GCGCGCAC GAG GCGCGCGC CCGCGAGTACCAGGC flaF 1330216 - 1330563 + | flagellar biosynthesis regulatory protein FlaF flbT 1330560 - 1330997 + | flagellar biosynthesis repressor FlbT flgD 1330999 - 1331406 + | flagellar basal body rod modification protein fliQ 1331410 - 1331676 + | flagellar biosynthesis protein FliQ TERM 1212 1331936 - 1331951 + G 86 -9 -4.70879 | overlap 1331922 1331946 TGGTGTCGCTGTGGA TCCAGC GGCC GCTGGA TTTTTCGGCTTTCCC TERM 1213 1333328 - 1333342 + G 74 -5.7 -4.44667 | opp_overlap 1333328, overlap 1333324 GCCTGATCGACGACA TCTGC CCGTC GCAGA TTTCTTATTCGGGAA flhA 1331752 - 1333839 + | flagellar biosynthesis protein FlhA fliR 1333836 - 1334582 + | flagellar biosynthesis protein FliR RPE_1181 1334589 - 1334984 + | hypothetical protein TERM 1214 1335506 - 1335474 - g 74 -9.8 -3.88559 | gap 1, opp_overlap 1335480 1335498, overlap 1335464 AAGCAGCTGGAGAAA TCCAG-GGCCGCGGC CGAC GCCGCGGCGGCCGAA GGCTGATTGCATTCA RPE_1182 1335024 - 1335512 + | hypothetical protein RPE_1183 1335544 - 1336023 + | hypothetical protein RPE_1184 1336026 - 1336478 + | hypothetical protein RPE_1185 1337157 - 1336444 - | two component transcriptional regulator TERM 1215 1336771 - 1336761 - G 86 -6.8 -4.87665 | opp_overlap 1336770 GGCCATCGAGAAAAA CGTG AAT CACG CTGGTCGGCGTCGGT RPE_1186 1338754 - 1337846 - | hypothetical protein TERM 1216 1339089 - 1339112 + G 71 -14.6 -2.64091 | opp_overlap 1339083 1339084 GATCACGAAGCTCCG CGCCACGTCG GGGC TGACGTGGCG TAGTATGGCGTCGTT RPE_1187 1338970 - 1339275 + | hypothetical protein RPE_1188 1340488 - 1339421 - | glycosyl transferase, group 1 TERM 1217 1339916 - 1339930 + g 70 -4.2 -4.56775 | CAGCGCGATCTTGAT GGCG CGGTCGA CGCC TTTTTCCGGCGCGAT TERM 1218 1339936 - 1339972 + g 70 -10.8 -3.62096 | gap 1, overlap 1339941 GGTCGACGCCTTTTT CCGGCGCGATCCGGCCG AGAA CGGCCAGATAGC-TCGG TTTCACGTCCTGCGG RPE_1189 1340982 - 1343183 + | Amylo-alpha-1,6-glucosidase RPE_1190 1343352 - 1344503 + | major facilitator transporter TERM 1219 1345512 - 1345491 - f 100 -13.7 -4.25848 | gap 1 AACGTTTCAGCAAAA CCCG-GGCGC AAT GCGCCGCGGG AACGGGAAACTGTGT RPE_1191 1346374 - 1346673 + | hypothetical protein RPE_1192 1346675 - 1347040 + | response regulator receiver protein RPE_1193 1347031 - 1349172 + | CheA signal transduction histidine kinases RPE_1194 1349222 - 1349704 + | CheW protein TERM 1220 1350272 - 1350251 - g 73 -12.9 -3.28712 | GGCTGCGGTGCAGAA GGCGGCGGC GGAT GCCGCCGAC CTCGAAATCCGCACC TERM 1221 1352326 - 1352307 - g 71 -9.2 -3.82031 | overlap 1352308 GCAAGCAGCATGAAA CCCACCGG CAAT CCGGTGGT CGACCGCTCGCTGCG RPE_1195 1349754 - 1352486 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 1222 1353116 - 1353147 + G 75 -9.4 -4.08767 | gap 1, opp_overlap 1353114 1353124 GACGACGGCAAATTC CGGATCAAGGACGAG GTC CGCGACC-TGATCCG TTTTGCGCCGCTCAA RPE_1196 1352555 - 1353382 + | MCP methyltransferase, CheR-type RPE_1197 1353379 - 1354020 + | CheD, stimulates methylation of MCP proteins RPE_1198 1354029 - 1355090 + | response regulator receiver modulated CheB methylesterase TERM 1223 1356198 - 1356184 - g 79 -7 -4.66938 | opp_overlap 1356190, overlap 1356185 AGGTTGAAGAGAAAA GGCCGG CCA CCGGCG CGCCGGCTGAGGTTG RPE_1199 1355094 - 1356233 + | methyl-accepting chemotaxis sensory transducer RPE_1200 1356243 - 1356542 + | anti-sigma-factor antagonist RPE_1201 1356547 - 1357203 + | putative anti-sigma regulatory factor, serine/threonine protein kinase RPE_1202 1357200 - 1358525 + | response regulator receiver modulated serine phosphatase RPE_1203 1358522 - 1358896 + | putative CheA signal transduction histidine kinases TERM 1224 1359087 - 1359069 - g 86 -4.4 -5.16841 | opp_overlap 1359069, overlap 1359071 GGACACCAAGAAAAA CCTCGCCA AGT TGGCGCTG GTGATCTCGGAGGAG TERM 1225 1360509 - 1360533 + G 72 -12.9 -3.08133 | TCAGTCCGATTTGGT CGATGCGCC GAAGGCG GGCGCATCG TTCGATGAATGGCTG RPE_1204 1358896 - 1362015 + | multi-sensor hybrid histidine kinase RPE_1205 1362857 - 1362021 - | hypothetical protein RPE_1206 1363507 - 1363151 - | rhodanese domain-containing protein RPE_1207 1364012 - 1364539 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit RPE_1208 1364635 - 1365012 + | nitrogen fixation-related protein RPE_1209 1365151 - 1365465 + | hypothetical protein TERM 1226 1365515 - 1365546 + T 100 -20.3 -3.50422 | opp_overlap 1365518, overlap 1365518 GCCGCTGCGGGAATT CAAGGCCTCAGCC CGCGAC GGCTGAGGCCTTG TTCGTTCTCATTGAT TERM 1227 1365518 - 1365543 + T 95 -16.2 -3.87584 | opp_overlap 1365518, overlap 1365515 GCTGCGGGAATTCAA GGCCTCAGCC CGCGAC GGCTGAGGCC TTGTTCGTTCTCATT TERM 1228 1365543 - 1365518 - T 86 -16.2 -3.17075 | opp_overlap 1365518 1365515 GCTGCGGGAATTCAA GGCCTCAGCC CGCGAC GGCTGAGGCC TTGTTCGTTCTCATT RPE_1210 1366918 - 1365554 - | VWA containing CoxE family protein RPE_1211 1367865 - 1366918 - | ATPase RPE_1212 1368837 - 1368007 - | PaaX domain-containing protein, C- domain TERM 1229 1369399 - 1369413 + G 86 -7 -4.9792 | opp_overlap 1369378, overlap 1369386 1369400 GCCGGGCGCGCATGT GGCGCG CGC CGCGCA TTTTTATATGCAGTC TERM 1230 1370578 - 1370596 + G 74 -12.4 -3.51924 | overlap 1370560 1370559 GGTGCAGCACGCGCC GGCGTTCG TGT CGGACGCC TTCTGTGCCTCGCGG RPE_1213 1369010 - 1370701 + | acyl-CoA dehydrogenase domain-containing protein TERM 1231 1370941 - 1370906 - f 91 -9.7 -4.49556 | gap 1, overlap 1370907 GGCTGACCAAACAAA CCGCATCCGCTGCACA TTGTT TGTGCCGCGG-TGCGC TTCCAAAGCCGCAGC TERM 1232 1370940 - 1370907 - f 74 -13.2 -3.29252 | gap 1, overlap 1370906 GCTGACCAAACAAAC CGCATCCGCTGCACA TTGTT TGTGCCGCGG-TGCG CTTCCAAAGCCGCAG RPE_1214 1371162 - 1372232 + | NLPA lipoprotein TERM 1233 1372978 - 1372998 + G 77 -4 -4.74103 | gap 1, opp_overlap 1372942, overlap 1372979 CGCTGCCGGGCATGA TCCGCGATC TGGC GAT-GCGGG TTTTTGAATTGCCGC RPE_1215 1372521 - 1373339 + | binding-protein-dependent transport systems inner membrane component TERM 1234 1374095 - 1374144 + G 75 -9 -4.05033 | gap 1, overlap 1374096 GCTCCGATCAGCTCC GGCCGGGACGACCCGGC-CGACC AGGGA GCATGAGCCGGGACGACCCGGCG TTTGTCTGAAGTGAG RPE_1216 1373336 - 1374127 + | ABC transporter related TERM 1235 1374284 - 1374232 - g 77 -14 -3.45023 | overlap 1374233 1374260 CTACGAGCAGCACAA GGCGCTGGGCCAGCAGCAGGC-GCCC AAA GCGCTGCC-GCCGCCGACCCCGCGCG ACGGCGCGCCGATCG TERM 1236 1374283 - 1374233 - g 80 -17.5 -2.66692 | overlap 1374232 1374260 TACGAGCAGCACAAG GCGCTGGGCCAGCAGCAGGC-GCCC AAA GCGCTGCC-GCCGCCGACCCCGCGC GACGGCGCGCCGATC TERM 1237 1374293 - 1374260 - g 81 -14.6 -3.54741 | overlap 1374233 1374232 CAGCAGGCGCCCAAA GCGCTGCCGCCGC-CG ACCC CGCGCGACGGC-GCGC CGATCGCAGTCGATG RPE_1217 1374167 - 1375006 + | hypothetical protein RPE_1218 1375003 - 1375644 + | hypothetical protein TERM 1238 1376762 - 1376780 + G 71 -12.4 -3.33162 | CGGCTGGATCGAGAC CGGCGTCG AGG TGACGCCG TTCTACGATCCGATG TERM 1239 1377540 - 1377562 + G 83 -9 -4.41348 | overlap 1377542 GAATTGGGCGTGATC TACGGCCCGC ACG GCGCGCCGGA TTTCTTTCGCGACGA TERM 1240 1377685 - 1377660 - g 72 -8.9 -4.08767 | CTTATCGGCCCAAAA CCGCAATGGGC GCGC GCCGATGGCGG CGAGGCCGGGCTGCA TERM 1241 1378566 - 1378547 - g 81 -10.6 -4.09685 | opp_overlap 1378545 1378558 CTGGACGCCGGAAAA CGCCGTCG GCAT CGGCGGCG CCTATATGTGCATCT TERM 1242 1378775 - 1378734 - g 73 -10.8 -3.62597 | gap 1, opp_overlap 1378740 GTGACGGCGGAAGAA CTGATGGACGCGCGCGCGG CGTTT CCGCACG-GCGCCTATCCG CTGAAAATCGAGGAG RPE_1219 1375647 - 1379195 + | urea amidolyase related protein TERM 1243 1379769 - 1379795 + G 85 -18 -2.72049 | opp_overlap 1379752 1379749 1379764 TCGGCATCAAGCCGA CGCCGGGGCTGG TCT CCAGTTCCGGCG TGGTTCCAGCCTGTC TERM 1244 1380747 - 1380768 + G 76 -8.7 -4.25104 | opp_overlap 1380745 CGACGCCAGCCAAGC CCGGGCT GATCCGCG AGCCCGG TTTTGCTGGGCCGGG TERM 1245 1380843 - 1380901 + G 83 -13 -3.79906 | gap 1, opp_overlap 1380870 1380873, overlap 1380845 CCTTCGTCGCCGCGA TCCCCGCGCCGCTCGG-CGTCGGCAAG ATCACG CTCGCCGACGGCCGCGCGGTGACCGGA TTCTTGTGCGAATCC TERM 1246 1380845 - 1380900 + G 76 -15.4 -2.87622 | gap 2, opp_overlap 1380870 1380873, overlap 1380843 TTCGTCGCCGCGATC CCCG-CGCCGCTCGG-CGTCGGCAAG ATCACG CTCGCCGACGGCCGCGCGGTGACCGG ATTCTTGTGCGAATC RPE_1220 1379195 - 1380988 + | amidase RPE_1221 1381169 - 1380972 - | hypothetical protein RPE_1222 1381573 - 1381289 - | hypothetical protein TERM 1247 1381679 - 1381691 + H 83 -4.9 -5.06414 | opp_overlap 1381679 TTGATATTCATAAAA CTAAA CCG TTTAG TTTTTCTTGCAAGAG TERM 1248 1381691 - 1381679 - H 71 -4.9 -4.45083 | opp_overlap 1381679 TTGATATTCATAAAA CTAAA CCG TTTAG TTTTTCTTGCAAGAG TERM 1249 1382058 - 1382097 + G 82 -6.2 -4.7254 | opp_overlap 1382062 CGGCCCGATCGATAT CGAAGTCTCGCTGCGCAC GATC GCGCGCAGCTACACCGCG TTTTTCCTCGACGAT RPE_1223 1381786 - 1382424 + | TetR family transcriptional regulator RPE_1224 1382557 - 1383480 + | PepSY-associated TM helix domain-containing protein RPE_1225 1383510 - 1384664 + | RND family efflux transporter MFP subunit TERM 1250 1385507 - 1385544 + G 74 -2.5 -4.82901 | gap 1, opp_overlap 1385496 1385495, overlap 1385526 1385528 GAATGCCGACACCTA TGC-GCGGCTGAACGGCG ACC CGACGATCGGCATCGGCA TTTTTCTCGCCCCCG TERM 1251 1386662 - 1386695 + G 79 -13.1 -3.71378 | gap 1 GCTGCCGTTCAACCT GCCGCCGGTGATCGGG CTC TCC-ACCGCCGGCGGC TTTCAGTATCAGCTG RPE_1226 1384668 - 1387835 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1252 1388124 - 1388084 - g 72 -5.3 -4.36914 | gap 1, overlap 1388085 CCGCCGCGCATAAAA CGACGCCGCACTA-CGCG ATCTGG CGCGACACCGTGGCGCCG ATGATGGCTGAGCCG RPE_1227 1387885 - 1388184 + | antibiotic biosynthesis monooxygenase TERM 1253 1388646 - 1388668 + G 77 -13.4 -3.54919 | opp_overlap 1388639 ACCAAGAACGCCGTG CTGTCGCGGC ACG GTCGCGACGG TTTCAAGAAATCGTT TERM 1254 1388920 - 1388892 - g 78 -15.9 -3.1886 | opp_overlap 1388909 ATGGAATGGTACCAA GGCGGCGCCTCGG CCG CCGAGGCGCGGGC AAACATGGCCTATGC RPE_1228 1388181 - 1389371 + | iron-containing alcohol dehydrogenase TERM 1255 1389706 - 1389728 + F 76 -6.9 -4.45544 | gap 1 GAAAACCGAGGGGGA CGG-AGCGCC GCTG GGCGCAACCG TTTTGGTTCGTGGCG TERM 1256 1390172 - 1390134 - f 72 -12.4 -3.28712 | opp_overlap 1390100 CGCTGCTCCGCAGAA CCGGGACCGTCGCG CGCACCGCATT CGTGACGGCCCCGG ATCTGCAGCGCACCA TERM 1257 1390743 - 1390761 + G 70 -10.2 -3.64703 | AGGCGTGGAACCGGG CGGCGTGC TGG GCGCGTCG TTTCGCTCCCGCGCG RPE_1229 1390312 - 1391313 + | NADH ubiquinone oxidoreductase, 20 kDa subunit TERM 1258 1391509 - 1391553 + G 71 -12.2 -3.28712 | opp_overlap 1391518, overlap 1391510 GCATCTGCTCGGTGT CGCAATCGATCGC-CGCAGTCG CGG CG-CTGCGCGCGGTCGATGGCA TTGTGGCGGCGCCGA TERM 1259 1391510 - 1391552 + G 74 -15.7 -2.57132 | opp_overlap 1391518, overlap 1391509 CATCTGCTCGGTGTC GCAATCGATCGC-CGCAGTCG CGG CG-CTGCGCGCGGTCGATGGC ATTGTGGCGGCGCCG RPE_1230 1391310 - 1392755 + | nickel-dependent hydrogenase, large subunit RPE_1231 1392989 - 1394104 + | hydrogenase (NiFe) small subunit HydA TERM 1260 1394469 - 1394487 + G 72 -8.9 -4.05033 | opp_overlap 1394436 1394448 AGCTGACGCTGCAGG TGCACGA CCACA TCGTGCA TTTCTATCACCTGCA RPE_1232 1394123 - 1395916 + | nickel-dependent hydrogenase, large subunit RPE_1233 1395994 - 1396719 + | Ni/Fe-hydrogenase, b-type cytochrome subunit RPE_1234 1397044 - 1397643 + | hydrogenase expression/formation protein RPE_1235 1397653 - 1397952 + | hydrogenase assembly chaperone hypC/hupF RPE_1236 1398204 - 1398611 + | hydrogenase-1 expression HyaE RPE_1237 1398608 - 1399480 + | HupH hydrogenase expression protein RPE_1238 1399477 - 1399689 + | rubredoxin-type Fe(Cys)4 protein TERM 1261 1400156 - 1400179 + G 74 -5.1 -4.56597 | overlap 1400157 TCACCGGCATCTCCG CCGGCGCCG CTGGAC CGCCGCCGC TTTTTGCGCGGCGAA RPE_1239 1399679 - 1400215 + | putative hydrogenase expression/formation protein HupJ RPE_1240 1400212 - 1401324 + | coenzyme F420-reducing hydrogenase alpha subunit-like protein RPE_1241 1401317 - 1401658 + | hydrogenase nickel insertion protein HypA RPE_1242 1401658 - 1402632 + | hydrogenase accessory protein HypB TERM 1262 1403502 - 1403478 - g 75 -9.2 -4.07568 | gap 1, opp_overlap 1403481, overlap 1403479 TCGTGCTGCTCAAAA GCCG-CGGCGC GTTG GCGCCGTCGGT GGCGCCCGCGCTCGC TERM 1263 1404377 - 1404348 - g 87 -7 -5.03314 | opp_overlap 1404348 1404371 1404374, overlap 1404349 GGCAGGGGGAAAAAA TCGCGACGCGCT TTGCCG ATCGCGCCGCGG CGCCGGCTCTCGCGT TERM 1264 1404711 - 1404732 + G 83 -13.7 -3.88232 | opp_overlap 1404702 CGCAAAGCGGCCTTA CCACCGTCG CGCT CGGCGGTGG TTGTTATCTCAACCG RPE_1243 1402637 - 1404892 + | (NiFe) hydrogenase maturation protein HypF RPE_1244 1404902 - 1405138 + | hydrogenase assembly chaperone hypC/hupF TERM 1265 1405194 - 1405153 - g 73 -13.7 -3.16935 | opp_overlap 1405165, overlap 1405143 1405141 1405155 1405180 AAATACGTCGACGAA TATCGCGACGGCAAGCTGG CGCG CAAACTCGCCGCCGCGATC GCGCAAGCCGTCGAG TERM 1266 1405192 - 1405155 - g 81 -16.3 -3.14229 | opp_overlap 1405165, overlap 1405143 1405141 1405153 1405180 ATACGTCGACGAATA TCGCGACGGCAAGCTGG CGCG CAAACTCGCCGCCGCGA TCGCGCAAGCCGTCG RPE_1245 1405135 - 1406277 + | hydrogenase expression/formation protein HypD RPE_1246 1406274 - 1407320 + | hydrogenase expression/formation protein HypE TERM 1267 1407886 - 1407904 + G 73 -12.4 -3.3514 | opp_overlap 1407884 GCGACGTCATCAATC TTGGCCGC CGC GCGGCCGA TTATGACATCTCGGT RPE_1247 1407348 - 1408823 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1268 1409882 - 1409868 - g 75 -9.2 -4.08767 | CTCACCTTTCCAAAA CCCGGC GAG GCCGAG AGCGTCGACGTCGAG RPE_1248 1408932 - 1410323 + | PAS/PAC sensor signal transduction histidine kinase RPE_1249 1410405 - 1410578 + | hypothetical protein TERM 1269 1410763 - 1410785 + F 70 -11.9 -3.14132 | opp_overlap 1410779 CGCTGAGCCGGTCGG GCGCGGCGG CCAAT CAGCCGCGC TTGATCGCGCGGGGC TERM 1270 1410851 - 1410867 + F 71 -10.8 -3.53012 | opp_overlap 1410835 1410834 CGCGATCTGCGAATC CGCGCC ACTCC GGCGCG TTTCGCGCGCGGCAC TERM 1271 1411806 - 1411841 + G 74 -7.6 -4.27316 | gap 2, opp_overlap 1411779 1411778 1411792, overlap 1411807 TCATCTGATCGCGCG GCGCGAGGCGCTGCAG GACGAA CTGC-GCGCCT-GCGG TTTTCAGTTCGCGGC RPE_1250 1410895 - 1412115 + | metallophosphoesterase TERM 1272 1413327 - 1413278 - g 86 -17.2 -3.32268 | gap 3, opp_overlap 1413311, overlap 1413267 1413262 1413266 1413269 CAAGCAGGCCGAGAA CGCGATCGGCCGCGCCGAGGCGCGC GCG GCGCGT-TCGGCGC-GC-GAGCGCG ACGAATTTGGTGCAA TERM 1273 1413311 - 1413332 + G 70 -10.1 -3.72576 | opp_overlap 1413262 1413266 1413269 1413278 GGCGCGCGCGGCGCG TTCGGCGCG CGAG CGCGACGAA TTTGGTGCAAGCGAC RPE_1251 1412112 - 1415567 + | SMC domain-containing protein RPE_1252 1415821 - 1415600 - | hypothetical protein RPE_1253 1417686 - 1416049 - | thiamine pyrophosphate binding domain-containing protein TERM 1274 1417728 - 1417769 + H 86 -15.9 -3.60627 | gap 1 AGCTTACCGCGAGGC GCGCGGCAGCGGGCGG CGAACTGCAAA CCGCTCGC-GCCGCGC TTTGGCATCCGATAG RPE_1254 1417819 - 1418274 + | AsnC family transcriptional regulator TERM 1275 1418521 - 1418490 - T 100 -16.7 -4.09864 | gap 1, opp_overlap 1418489 1418483 AGCGACGTGTCAAAA CGCAAATGGCCGGG ACAAG CCCGGCCATT-GCG ATGACTTATGGGCAG RPE_1255 1418913 - 1418527 - | rhodanese domain-containing protein RPE_1256 1419358 - 1419101 - | hypothetical protein TERM 1276 1419129 - 1419173 + g 75 -11.5 -3.72576 | gap 2 TGGTGCGCGGGCGGC GGCGGAGG-CGC-CTTGGTCG AACAA CGATCGAGCGCGTCCTCGGCC TTTCGTGCGGCGCGA RPE_1257 1419949 - 1419422 - | hypothetical protein TERM 1277 1419586 - 1419610 + g 80 -14.3 -3.64703 | overlap 1419559 1419570 TCATTGCTGACTTAG TCGCCGGTGAC TTG GTCGCCGGTGA TTTGGATGCCGAAGA RPE_1258 1422725 - 1420032 - | molybdopterin oxidoreductase TERM 1278 1421933 - 1421964 + g 76 -8.6 -4.2349 | GGATGCTCGGCGCGA TCTCGCGGGCGCGC ACCA GCGCCTCGGTGAGA TTTTCGGTATGCGCA RPE_1259 1424341 - 1422725 - | sulfite reductase TERM 1279 1423422 - 1423401 - G 75 -7.2 -4.37092 | AGCGCTTCGACAAAA GCTTCCGG GTCGGG CCGGATGC CGGGGAATTTCTCGA TERM 1280 1424291 - 1424255 - G 70 -3.5 -4.57073 | opp_overlap 1424269, overlap 1424288 CAGGCCGGCGAAAAA GCCGTTGAGCCAGGAGC GCT GCTCTTCGGAGAACGGC GCGGTTTCGGGCACC nirA 1426098 - 1424338 - | ferredoxin-nitrite reductase TERM 1281 1425150 - 1425124 - G 70 -3.6 -4.57073 | GACTTCGCCCAAAAA CTTCTCAAAACC CCA GGCGTCGAGCAG ATACTTTAGCCGCGC TERM 1282 1425356 - 1425338 - G 82 -11.7 -4.07568 | opp_overlap 1425326 1425321 1425351 GGTTGGGCGCCAAAA CCGTCGC GGATT GCGACGG CTTGGAAGCCGATGT TERM 1283 1425811 - 1425831 + g 72 -8.2 -4.08064 | opp_overlap 1425809, overlap 1425822 CAGCCCATAATAGCG CCAGCGGA AATTG TCCGCCGG TTTTGGCGGCGCATT RPE_1261 1427351 - 1426122 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase RPE_1262 1427770 - 1427348 - | globin RPE_1263 1428760 - 1427966 - | nitrate ABC transporter, ATPase subunits C and D RPE_1264 1429670 - 1428771 - | nitrate ABC transporter, inner membrane subunit RPE_1265 1431039 - 1429732 - | ABC-type nitrate transport system periplasmic component TERM 1284 1431119 - 1431161 + r 100 -22.9 -3.25823 | gap 1, opp_overlap 1431119 CCGCCCAAAACAAAA TGCCGCTG-CCTGGCATCGC GCGG GCGATTCCAGGACAGCGGCA TTGCTGTCGGAGAGC TERM 1285 1431161 - 1431119 - R 100 -22.9 -5.07652 | gap 1, opp_overlap 1431119 CCGCCCAAAACAAAA TGCCGCTG-CCTGGCATCGC GCGG GCGATTCCAGGACAGCGGCA TTGCTGTCGGAGAGC RPE_1266 1432551 - 1431385 - | putative nitrate transporter component, NrtA TERM 1286 1431496 - 1431454 - G 81 -12.4 -3.85698 | overlap 1431439 1431455 CGCGGGGCCGATAAA GCCGCCGATGCCGTCGGCCG GTT CGGACGCCGGCGGCGGCGAG GTGGGACCGAGCGCG TERM 1287 1431495 - 1431455 - G 76 -15.9 -2.91276 | overlap 1431439 1431454 GCGGGGCCGATAAAG CCGCCGATGCCGTCGGCCG GTT CGGACGCCGGCGGCGGCGA GGTGGGACCGAGCGC RPE_1267 1433132 - 1432548 - | response regulator receiver/ANTAR domain-containing protein TERM 1288 1432587 - 1432599 + g 83 -3.4 -5.24416 | GATCACCGATTGGGC GATC TCCAC GATC TTTTTCTTCTCGTTC TERM 1289 1433083 - 1433095 + g 70 -10.5 -3.73224 | TCCTTGAGGATGGCG GCCCG CAC CGGGC TTTCATCCACGATGA RPE_1268 1433347 - 1433733 + | BA14K family protein TERM 1290 1433750 - 1433785 + F 100 -25.6 -4.09685 | opp_overlap 1433757, overlap 1433757 CTCCGCATTGCCTGT CGACAGATCGCCGCGG TCCA CCGCGGCGATTTGTCG TTTTGGCGCATCCGC TERM 1291 1433757 - 1433778 + F 100 -17.3 -4.208 | opp_overlap 1433757, overlap 1433750 TTGCCTGTCGACAGA TCGCCGCGG TCCA CCGCGGCGA TTTGTCGTTTTGGCG TERM 1292 1433778 - 1433757 - f 87 -17.3 -2.87132 | opp_overlap 1433750 1433757 TTGCCTGTCGACAGA TCGCCGCGG TCCA CCGCGGCGA TTTGTCGTTTTGGCG RPE_1269 1433866 - 1434114 + | hypothetical protein RPE_1270 1434257 - 1434433 + | hypothetical protein TERM 1293 1434443 - 1434481 + T 70 -11.8 -3.15861 | gap 1, overlap 1434446 1434468 AGCTGAGCACCGGAT GGATGGTCGA-CGCGGT GGCATG ACCGCGTTCGGCCATCA TTCCTGGGCGTCATG TERM 1294 1434495 - 1434519 + T 95 -10 -4.42386 | overlap 1434468 CATTCCTGGGCGTCA TGGCCGGG CGGTCTGGT CCCGGCCA TTTTCTACCTGCCCG RPE_1271 1434929 - 1434609 - | hypothetical protein RPE_1272 1435406 - 1434993 - | glyoxalase/bleomycin resistance protein/dioxygenase RPE_1273 1437274 - 1435460 - | malto-oligosyltrehalose trehalohydrolase TERM 1295 1436425 - 1436389 - G 78 -15.1 -3.34104 | gap 1 CGAGAACCAGATGAA CCTGC-CGGCCGCGCG CGACCT CGCGCAGCCGCGCCGG AATCTCGGTGAGCAG TERM 1296 1437334 - 1437310 - H 71 -11.4 -3.53563 | overlap 1437313 AGAGGGTTGTTGAAA GAACGGTCGG ATCCG CCGCCCGTTC CCGATGCGGGCTATC RPE_1274 1437430 - 1439592 + | glycogen debranching enzyme GlgX RPE_1275 1439711 - 1440085 + | response regulator receiver protein RPE_1276 1440280 - 1441080 + | hypothetical protein RPE_1277 1441139 - 1441363 + | hypothetical protein RPE_1278 1443615 - 1441402 - | Alpha,alpha-trehalose-phosphate synthase (UDP-forming) TERM 1297 1443693 - 1443681 - R 81 -10.5 -4.14243 | opp_overlap 1443681 CAGTCGATCCGAAAA GCCGC TTG GCGGC TTGGTCGCGGATCCA RPE_1279 1444229 - 1443972 - | hypothetical protein RPE_1280 1444563 - 1446014 + | anion transporter RPE_1281 1446202 - 1447851 + | phosphoglucomutase RPE_1282 1447996 - 1448709 + | LuxR family transcriptional regulator RPE_1283 1448841 - 1449761 + | hypothetical protein TERM 1298 1450165 - 1450181 + F 71 -5.1 -4.39696 | opp_overlap 1450147, overlap 1450161 TTGTGTTTCAACAGA TTGCTGA ACC TCGGCGA TTTGTTACTTTGAGG RPE_1284 1450240 - 1450947 + | hypothetical protein RPE_1285 1451028 - 1451900 + | hypothetical protein TERM 1299 1452019 - 1452006 - gf 76 -8.1 -4.24342 | TGCGGCATGAAGAAA GAGGC TGAC GCCTC TGATGGCAAAGATTG RPE_1286 1451997 - 1452347 + | CopG/Arc/MetJ family transcriptional regulator RPE_1287 1452319 - 1453059 + | NnrU family protein RPE_1288 1453178 - 1454398 + | heme-Cu protein NnrS RPE_1289 1454420 - 1454686 + | hypothetical protein RPE_1290 1455311 - 1454673 - | two component LuxR family transcriptional regulator RPE_1291 1455637 - 1455879 + | hypothetical protein RPE_1292 1456156 - 1456299 + | antenna complex, alpha/beta subunit RPE_1293 1456314 - 1456493 + | antenna complex, alpha/beta subunit TERM 1300 1456496 - 1456511 + F 76 -7.6 -4.25104 | opp_overlap 1456496 CTCCATCGGCTAAAA CAGTTC TTCG GAACTG TTTTGCTGGACCGGG TERM 1301 1456511 - 1456496 - f 70 -7.6 -4.09685 | opp_overlap 1456496 CTCCATCGGCTAAAA CAGTTC TTCG GAACTG TTTTGCTGGACCGGG TERM 1302 1456519 - 1456545 + F 73 -10.9 -3.60798 | gap 1, overlap 1456519 1456516 1456522 CGGAACTGTTTTGCT G-GACCGGGATC CAAG GGTCCCGGTCGC TTGCTTTGTAGCCGT TERM 1303 1457014 - 1457053 + G 70 -10 -3.62572 | gap 1, opp_overlap 1457014 TCCGTTCCTTTACAA GGGCACGATGGTGCAGTTC GCC GGCCT-CGCCATCCTGCCC TTTGCGCTGCTGGTG TERM 1304 1457419 - 1457391 - g 77 -10.2 -4.00532 | gap 1 TTTGGAAACAGGAAA GCCGCGC-CAGCG CCGC CGCCGCGCGCGCC CATCAGCAAGCTGCG TERM 1305 1458085 - 1458067 - g 79 -3.8 -4.90266 | opp_overlap 1458067 CCGACGAACCAAAAA TTATCCTG GAG CGGGACAA TTGCTGACACGGCCG RPE_1294 1456688 - 1458136 + | PUCC protein RPE_1295 1458133 - 1458780 + | hypothetical protein RPE_1296 1458791 - 1459036 + | hypothetical protein TERM 1306 1459051 - 1459086 + F 100 -24.2 -4.82901 | opp_overlap 1459056, overlap 1459056 ATCTTCCACTGAGTA CGAAACGCCGCAGGCA GCGA TGCCTGCGGCGTTTTG TTTTTGTCGGGCCGC TERM 1307 1459056 - 1459081 + F 100 -20.5 -5.35224 | opp_overlap 1459056, overlap 1459051 CCACTGAGTACGAAA CGCCGCAGGCA GCGA TGCCTGCGGCG TTTTGTTTTTGTCGG TERM 1308 1459081 - 1459056 - f 100 -20.5 -3.79747 | opp_overlap 1459051 1459056 CCACTGAGTACGAAA CGCCGCAGGCA GCGA TGCCTGCGGCG TTTTGTTTTTGTCGG RPE_1297 1459168 - 1460670 + | FAD dependent oxidoreductase RPE_1298 1460788 - 1461237 + | hypothetical protein TERM 1309 1461262 - 1461283 + T 100 -15.1 -4.45771 | opp_overlap 1461262 GGATAGCACAAAAAA CCGGGGGCC TAGC GGCTCCCGG TTTATCTTTTGGCAT TERM 1310 1461283 - 1461262 - T 100 -12.9 -5.34555 | opp_overlap 1461262 GGATAGCACAAAAAA CCGGGGGCC TAGC GGCTCCCGG TTTATCTTTTGGCAT RPE_1299 1461767 - 1461309 - | hypothetical protein RPE_1300 1463159 - 1461930 - | coenzyme F420 hydrogenase/dehydrogenase beta subunit TERM 1311 1462630 - 1462673 + g 72 -11.7 -3.53012 | gap 1 CTCTTCTCCAGCTGG CGCAGCGCGTAGATCTGGCA CGGGA TGCC-GATCACCGCGATGCG TTTGAAACCGCGCGC RPE_1301 1463650 - 1463153 - | hypothetical protein RPE_1302 1464208 - 1463702 - | hypothetical protein RPE_1303 1465803 - 1464208 - | hypothetical protein TERM 1312 1465511 - 1465552 + g 72 -4.4 -4.57073 | gap 1, opp_overlap 1465535 ATCGGCACCGGATTG CGGCCGTGGC-CGGTGA AGTCGAAAG TCACCGCGACATAGCCG TTTTTCGCCAGCGTC TERM 1313 1465664 - 1465680 + g 74 -7.9 -4.20084 | opp_overlap 1465659, overlap 1465665 GGGCGGAAGATCCGG ATCGGCG TCT CGCCGAC TTTTGCGTCGGTGAT RPE_1304 1467153 - 1465834 - | hypothetical protein RPE_1305 1467439 - 1468419 + | porphobilinogen deaminase RPE_1306 1468463 - 1469485 + | magnesium chelatase ATPase subunit I TERM 1314 1470026 - 1470002 - g 71 -15.1 -2.52015 | opp_overlap 1469994, overlap 1470001 GCGACACCGAGGAAT TCGACATCGCC GCC GGCGATATCGA GGTCGCGCGTTCTCG bchD 1469482 - 1471257 + | magnesium chelatase subunit D RPE_1308 1472478 - 1471234 - | AraC family transcriptional regulator RPE_1309 1473869 - 1472634 - | AraC family transcriptional regulator RPE_1310 1474178 - 1475881 + | methyl-accepting chemotaxis sensory transducer TERM 1315 1476275 - 1476319 + F 72 -7.8 -4.18018 | overlap 1476276 1476278 CCCCCGCCAGTTTCG AGACCGTTCGCCGGGC GGCCCGATGCAGA GCCGGGCGAGCGGTCA TTTTGAGTGAAACAA TERM 1316 1476702 - 1476689 - g 73 -9.5 -3.92522 | opp_overlap 1476698 GGCGAATCGCAGAAA CGCGC CTTG GCGCG GATTGCAGCGCTTCG RPE_1311 1476452 - 1478149 + | methyl-accepting chemotaxis sensory transducer TERM 1317 1478210 - 1478179 - T 87 -18.8 -2.71712 | opp_overlap 1478179 1478184, overlap 1478184 TTCGCCGCTCGAAAC GAAAATGGCCGGGG TGAA CCCCGGCCATTTGC TATCTGCGATGATGC TERM 1318 1478179 - 1478210 + T 91 -18.8 -2.90212 | opp_overlap 1478179 1478184, overlap 1478184 TTCGCCGCTCGAAAC GAAAATGGCCGGGG TGAA CCCCGGCCATTTGC TATCTGCGATGATGC TERM 1319 1478205 - 1478184 - T 100 -17.3 -4.54727 | opp_overlap 1478184 1478179, overlap 1478179 CGCTCGAAACGAAAA TGGCCGGGG TGAA CCCCGGCCA TTTGCTATCTGCGAT TERM 1320 1478184 - 1478205 + T 100 -17.3 -3.88766 | opp_overlap 1478179 1478184, overlap 1478179 CGCTCGAAACGAAAA TGGCCGGGG TGAA CCCCGGCCA TTTGCTATCTGCGAT hemE 1479278 - 1478232 - | uroporphyrinogen decarboxylase TERM 1321 1480022 - 1480034 + G 84 -6.9 -4.72272 | overlap 1479997 TCTCCTCACCGCGCG GCCGG TGA TCGGC TTTTTCCTGAAGAAG RPE_1313 1479390 - 1480391 + | hypothetical protein TERM 1322 1480371 - 1480411 + F 77 -14.7 -2.85351 | gap 1 TTCTTCGCCGGCCTG CCGG-CATCGCGCGCGCC TTAGCC GGCGCGCCCGATGTCCGA TCTGGTCTGGAGCAG TERM 1323 1480597 - 1480627 + G 85 -13.2 -4.09685 | TGGCGCCGCATTTCA CCGTGATCGCGCCG GAT CTGCCCGGTCACGG TTTTACGCAATCGCC RPE_1314 1480404 - 1481294 + | alpha/beta hydrolase fold RPE_1315 1481374 - 1482927 + | amine oxidase RPE_1316 1482924 - 1483976 + | squalene/phytoene synthase TERM 1324 1484701 - 1484736 + G 72 -5.2 -4.36914 | gap 1, overlap 1484708 1484715 ACGACTACTTCTATC TGCCGC-ATCGCCAGGC CGC GCGCGGCGTCGGCGGCA TTTTCTACGACCACC TERM 1325 1484872 - 1484898 + G 74 -15.1 -3.00994 | GGACCGAGGCCGAGC GCGCGCAGCAG CTCGC CTGCCGCGCGC TCTATGTCGAATTCA RPE_1317 1484109 - 1485011 + | coproporphyrinogen III oxidase RPE_1318 1485036 - 1485176 + | hypothetical protein RPE_1319 1485222 - 1485371 + | hypothetical protein TERM 1326 1485421 - 1485452 + T 100 -7.8 -5.43866 | overlap 1485394 1485399 CCCGCGCGCGGTGCA GCACCCGCCGCGGC ACGC GCTGAGGCCAGTGC TTTTTTTGAACGTTC RPE_1320 1486497 - 1485466 - | hydroxyneurosporene synthase TERM 1327 1485783 - 1485811 + g 70 -10.2 -3.6422 | opp_overlap 1485748 1485801, overlap 1485799 CCGGACCCTCGCGGC CGGTGACGTCGT AGAGC ACGGCGGCGCCG TGTTTTAGCGCGGTG TERM 1328 1485799 - 1485813 + g 82 -11.4 -4.08767 | opp_overlap 1485748 1485801, overlap 1485783 GGTGACGTCGTAGAG CACGGC GGC GCCGTG TTTTAGCGCGGTGCG RPE_1321 1487074 - 1486652 - | integral membrane protein-like protein RPE_1322 1487543 - 1488193 + | 3-beta hydroxysteroid dehydrogenase/isomerase RPE_1323 1489849 - 1488305 - | FAD dependent oxidoreductase TERM 1329 1489461 - 1489439 - G 74 -12.7 -3.58533 | gap 1, overlap 1489430 1489431 GCAGAACCGGCGAAA CCGG-GCGGC CTCG GCCGCTCCGG CGAAATCGCCGATCG RPE_1324 1489929 - 1490795 + | polyprenyl synthetase TERM 1330 1491052 - 1491091 + G 77 -9.8 -3.90112 | gap 1, opp_overlap 1491049, overlap 1491052 CTTTTGGACGAACTC G-CGCGCGGCCCGGTCGGC ACC GCCGAACTGGCGACGCGGC TTTCATTGCCGCGGG TERM 1331 1491546 - 1491576 + G 72 -11.7 -3.53012 | CATGCTGTTCGATCT GCCGGCGGTGGCC GAGCA GGCGGCCGCCCGC TTTCAGGCCAAGGGC TERM 1332 1491782 - 1491812 + G 76 -6 -4.46854 | overlap 1491784 AACCGATGGTCGGGG GAGGCGGTGCAGAA AAT TTCGGGGCCGCCTA TTTTGCCTTTTATCT RPE_1325 1490833 - 1491978 + | O-methyltransferase family protein TERM 1333 1492074 - 1492058 - f 70 -12.3 -3.16039 | AAGGACGCGGAGTAA GCGATGG AAA CCATCGC GGTAGTGCTGAAGCA RPE_1326 1492061 - 1492999 + | chlorophyll synthesis pathway protein BchC TERM 1334 1493439 - 1493425 - g 71 -2.8 -4.58283 | GAACTGCTCGAAAAA CTCG GCTTCCA CGAG TGGGGGTTCGACTAC TERM 1335 1493850 - 1493817 - g 95 -16.7 -4.08216 | gap 1 GGAGTTGGCCGAAAA CGTCG-CGACCGCACC GCC GGTGCGGCCGACGCCG CTGAGCCAGGACGGG RPE_1327 1492999 - 1493994 + | chlorophyllide reductase iron protein subunit X TERM 1336 1494191 - 1494171 - g 74 -15.4 -2.62184 | opp_overlap 1494161, overlap 1494137 GCGCGGCCGAGATGA CGGCGGCG GCGAA CGCCGCCG GCAAGAGCGACATTC TERM 1337 1494703 - 1494671 - g 86 -16.9 -3.34013 | TACGCCCGCAAGGAA GCCGAGCAGGGCCCG GTG CAAGCCCCGCGCGGC GGCCGCAACGAGCGG RPE_1328 1494020 - 1495609 + | chlorophyllide reductase subunit Y TERM 1338 1496382 - 1496341 - g 77 -13 -3.5394 | opp_overlap 1496350 AAATTCCTGCGCAAA CTCGGCGAACTGCTCGGG CTCGAC CCCGAACCGTTCATCGAG CGCGAGAAGCACACC RPE_1329 1495609 - 1497057 + | chlorophyllide reductase subunit Z RPE_1330 1497135 - 1497362 + | hypothetical protein RPE_1331 1497505 - 1497717 + | antenna complex, alpha/beta subunit RPE_1332 1497733 - 1497903 + | antenna complex, alpha/beta subunit TERM 1339 1497962 - 1497939 - f 71 -8.1 -3.92602 | opp_overlap 1497940, overlap 1497940 GGAAGAGGCGAGAAA CGGACGAGC TGCCGG GCTCGTCCT CTTCCGGTAGCTACG TERM 1340 1498077 - 1498062 - g 83 -2.4 -5.24531 | opp_overlap 1498066, overlap 1498064 1498065 AGTTTTGAGAAAAAA TACCGC GTTC GCGGCG GAACGCTAATTGCGG TERM 1341 1498075 - 1498064 - g 72 -7.2 -4.25873 | opp_overlap 1498066, overlap 1498062 1498065 TTTTGAGAAAAAATA CCGC GTTC GCGG CGGAACGCTAATTGC RPE_1333 1498035 - 1498868 + | photosynthetic reaction center subunit L RPE_1334 1498899 - 1499819 + | photosynthetic reaction center subunit M TERM 1342 1499849 - 1499895 + F 82 -14.2 -3.27602 | opp_overlap 1499853, overlap 1499847 1499888 1499890 AGTCCAGCGAACATC GAAAGCGCGCGCCCGGCTTGCA ATT TGCCAGCTTGGCGCGCGCAACC TCTTGCTCTTGGTTC TERM 1343 1499891 - 1499853 - f 100 -20.2 -3.77087 | opp_overlap 1499849 1499847 1499888 1499890 CAGCGAACATCGAAA GCGCGCGCCCGGCTTGCA ATT TGCCAGCTTGGCGCGCGC AACCTCTTGCTCTTG RPE_1335 1500006 - 1501439 + | putative PAS/PAC sensor protein RPE_1336 1501432 - 1502325 + | bacteriochlorophyll/chlorophyll a synthase TERM 1344 1503205 - 1503219 + G 72 -11.4 -3.55444 | TCTTCCCGCGCTCGC GCGGCA ACC TGCCGC TTTGGACCATCGGCG TERM 1345 1503458 - 1503496 + G 72 -5.2 -4.41302 | gap 1, overlap 1503431 1503436 GCTGGCGTTCGGGCT CG-GCGGTTTCGTCGGC ACGCTG GCCAGCGACATCGCGCG TTTCTTCCTTTCGTC TERM 1346 1503541 - 1503553 + G 71 -3.3 -4.65032 | ACTCCACCGTGTTCG CGAGC GAA GCTGG TTTGTTTGTGCTTTC RPE_1337 1502325 - 1503674 + | PUCC protein RPE_1338 1503671 - 1504876 + | geranylgeranyl reductase RPE_1339 1504876 - 1505364 + | TspO and MBR like proteins RPE_1340 1505410 - 1505676 + | hypothetical protein TERM 1347 1505686 - 1505654 - T 100 -21.3 -2.8655 | TCCATCTATACGACA TCGGCCGCCGCTGGC GGA GCTAGCGACGGCCGA TCTCAGATCGATGAT RPE_1341 1506149 - 1505712 - | cytochrome c, class I TERM 1348 1506224 - 1506210 - H 78 -2.8 -4.98255 | CGGGAAGCATAAAAA CCTG TTCCCCT CAGG CCGTAAAGCCATATT RPE_1342 1506352 - 1507812 + | putative PAS/PAC sensor protein TERM 1349 1508059 - 1508100 + G 72 -13.7 -3.04144 | gap 1 TATCCTGCCGCACCT CGACCCC-GATCTCGATCGG CTG CCGATCGCGATCCGGTGCCG TCTTGGCAATCCGAC RPE_1343 1507814 - 1509994 + | putative PAS/PAC sensor protein RPE_1344 1510702 - 1510013 - | Heme oxygenase (decyclizing) RPE_1345 1511635 - 1510751 - | cobalamin B12-binding protein TERM 1350 1511222 - 1511245 + g 71 -3 -4.59109 | overlap 1511208 1511224 GCTGACGGCCAGCGT GACGCTGGCG AAGT CGGTGGTGTC TTTTTCCCACATCTG RPE_1346 1511944 - 1512471 + | 2-vinyl bacteriochlorophyllide hydratase RPE_1347 1512468 - 1513751 + | light-independent protochlorophyllide reductase subunit N TERM 1351 1515298 - 1515288 - gf 71 -4.6 -4.41047 | overlap 1515289 ATTCGCCAACGAAAA CGGC GTC GCCA CCATAACCGTTGAGA RPE_1348 1513753 - 1515348 + | light-independent protochlorophyllide reductase subunit B bchH 1515323 - 1519069 + | magnesium chelatase subunit H TERM 1352 1519161 - 1519198 + G 70 -3.9 -4.45083 | GGGCAGCGTTCAGGT CCAGCTCGATCCCGATC TGAA GATCGGGACCGCAAAGG TTTTCTCGATCTACG chlL 1519066 - 1519998 + | protochlorophyllide reductase iron-sulfur ATP-binding protein TERM 1353 1520645 - 1520659 + G 71 -9.2 -3.87815 | GGTCGGCCGCACCCA CCGCGT CGC GCGCGG TTTCTACACCTCGCA RPE_1351 1519998 - 1520699 + | Mg-protoporphyrin IX methyl transferase TERM 1354 1520725 - 1520758 + G 74 -12.3 -3.57144 | opp_overlap 1520726, overlap 1520726 GGCAACACTCGCGAA AGGCTGGATGCGGCT TGGA AGCCGCTTCCTGCCG TTTGCCGATGCCGCG TERM 1355 1520757 - 1520726 - g 83 -15.8 -3.57615 | opp_overlap 1520725 1520726 GCAACACTCGCGAAA GGCTGGATGCGGCT TGGA AGCCGCTTCCTGCC GTTTGCCGATGCCGC TERM 1356 1520726 - 1520757 + G 75 -15.8 -2.74144 | opp_overlap 1520726, overlap 1520725 GCAACACTCGCGAAA GGCTGGATGCGGCT TGGA AGCCGCTTCCTGCC GTTTGCCGATGCCGC TERM 1357 1522053 - 1522081 + G 72 -5.1 -4.4017 | overlap 1522042 1522055 CTCTGGTTGCGATGG GACCTCTCGTGCG GTC TGCACGGGGGAGC TTTTCTCAACCTTCA TERM 1358 1522117 - 1522103 - g 70 -10 -3.65827 | opp_overlap 1522103 CAACCTTCATCCAAA TTCGGC TTA GCCGAA TTTCCAGGTTAACCA RPE_1352 1520696 - 1522129 + | PUCC protein RPE_1353 1522151 - 1522918 + | photosynthetic reaction center subunit H TERM 1359 1523037 - 1523056 + G 70 -11.4 -3.41602 | GTTCCATGTCAGGGA GGCCGGCA TTTA TGTCGGCC TTCTCCTGGCCTGGA RPE_1354 1522915 - 1523577 + | putative photosynthetic complex assembly protein TERM 1360 1523957 - 1523938 - g 80 -9.3 -4.25104 | GGCGCGCCATGAAAA CGGTCAG ATCACG CTGACCG ATACCAACAACGACA RPE_1355 1523591 - 1524058 + | putative photosynthetic complex assembly protein RPE_1356 1524055 - 1524351 + | hypothetical protein RPE_1357 1524360 - 1525454 + | magnesium-protoporphyrin IX monomethyl ester cyclase RPE_1358 1525468 - 1526541 + | hypothetical protein TERM 1361 1527057 - 1527020 - g 71 -12.7 -3.28712 | opp_overlap 1527010 1527055 GGTGTTCGCGCACAA CGACGTCCGCGATCTTG AGCG CAAGCTCGCCGACCTCG ATCCGGAAGCGCCGA RPE_1359 1526538 - 1527749 + | 5-aminolevulinate synthase TERM 1362 1527779 - 1527815 + T 86 -18.1 -2.71712 | opp_overlap 1527784, overlap 1527784 GATGAAGATCTGAAC AAAAACGCCCCTGACGG ATC CCGTCAGGGACGTTTTG CTTTCGGCGACGCCC TERM 1363 1527784 - 1527810 + T 100 -18 -4.54727 | opp_overlap 1527784, overlap 1527779 AGATCTGAACAAAAA CGCCCCTGACGG ATC CCGTCAGGGACG TTTTGCTTTCGGCGA TERM 1364 1527810 - 1527784 - T 100 -20.2 -5.09204 | opp_overlap 1527779 1527784 AGATCTGAACAAAAA CGCCCCTGACGG ATC CCGTCAGGGACG TTTTGCTTTCGGCGA RPE_1360 1528770 - 1527802 - | LysR family transcriptional regulator TERM 1365 1527888 - 1527868 - G 74 -12.5 -3.61398 | CGTGCGCGGCAAGAA CTCCGCGCC CTT GGCGCCGAG GAAATCCAGCATCGC TERM 1366 1529494 - 1529461 - g 70 -11 -3.59979 | gap 1, opp_overlap 1529478 1529488 CGGCGCCACGGTAAA GCCGAAGCT-CGGCC TCTCC GGCCGCAACTACGGC CGCGTGGTCTATGAG rbcL 1528934 - 1530391 + | ribulose bisophosphate carboxylase RPE_1362 1530403 - 1530828 + | ribulose-bisphosphate carboxylase form I small subunit RPE_1363 1530825 - 1531745 + | ATPase central domain-containing protein TERM 1367 1532286 - 1532230 - T 79 -9.5 -4.15066 | gap 4 CATTTACAAACCAAA GCGCTAGCCGCGACTTCACCTCTCCCCGC TGC GCGGGGAGAGGTC--GAC-CGGTT-GCGC GAAGCGCGGCCGGTC RPE_1364 1533290 - 1532508 - | alpha/beta hydrolase fold TERM 1368 1532645 - 1532703 + g 70 -11.5 -3.41527 | gap 1 CGGGGGTCATCATGT CGCGCTCGCCGATGATCACGGTGGTTGG CACG CTCACCTCGGCGG-CGGCGGCGAGCGCG TTGTCGTAGGCATTG RPE_1365 1534589 - 1533294 - | O-acetylhomoserine aminocarboxypropyltransferase RPE_1366 1536905 - 1534638 - | oligopeptidase B TERM 1369 1536961 - 1537015 + r 100 -14.3 -4.17316 | gap 2, opp_overlap 1537001, overlap 1536962 GGATAGCGCTTTCAC GC-CGTCATTCCGGG-GCGCTCGCAGC AAG GCTGCGAGCGAACCCGGAATCCCGAGA TTGTTTTCAAAGGAT TERM 1370 1536962 - 1537014 + r 90 -17.8 -3.09908 | gap 2, opp_overlap 1537001, overlap 1536961 GATAGCGCTTTCACG C-CGTCATTCCGGG-GCGCTCGCAGC AAG GCTGCGAGCGAACCCGGAATCCCGAG ATTGTTTTCAAAGGA TERM 1371 1537145 - 1537184 + r 93 -18.6 -3.28712 | TGGTGTGCTGCTGAT CCGGGGCCGTTGCGGAAG GCGG CATTCGTAACGGTCCCGG TTCTGCGGGGCAGCA RPE_1367 1537454 - 1537233 - | SlyX TERM 1372 1537770 - 1537716 - g 100 -19.9 -3.6502 | gap 1, opp_overlap 1537720 1537757, overlap 1537717 TAGCCGCGATCGAAA CGCTGCGCGCTGGCGGC-ACCGCGGC CGAC GCCGCGATCGCCGCGAGCGCGCTGTT GGCGGTGATCGAGCC TERM 1373 1537769 - 1537717 - g 100 -23.4 -2.78798 | gap 1, opp_overlap 1537720 1537757, overlap 1537716 AGCCGCGATCGAAAC GCTGCGCGCTGGCGGC-ACCGCGGC CGAC GCCGCGATCGCCGCGAGCGCGCTGT TGGCGGTGATCGAGC TERM 1374 1537720 - 1537766 + G 100 -25.9 -3.04792 | gap 1, opp_overlap 1537717 1537716, overlap 1537757 CGCGATCGAAACGCT GCGCGCTGGCGGC-ACCGCGGC CGAC GCCGCGATCGCCGCGAGCGCGC TGTTGGCGGTGATCG RPE_1368 1537619 - 1539205 + | gamma-glutamyltransferase TERM 1375 1539386 - 1539332 - T 87 -18.7 -2.63913 | gap 1, opp_overlap 1539345 1539349, overlap 1539349 GACCAGTTGATAGTA GGTCCGAGACACGCAAAGACCGGCCG AAGC CGGCCGGTCTTTGT-TATCACGGATC GATCGATCAGAGCTT TERM 1376 1539345 - 1539374 + T 100 -22.3 -3.30243 | opp_overlap 1539332 1539349, overlap 1539349 TAGGTCCGAGACACG CAAAGACCGGCCG AAGC CGGCCGGTCTTTG TTATCACGGATCGAT TERM 1377 1539370 - 1539349 - T 100 -17.3 -3.74077 | opp_overlap 1539345 1539349, overlap 1539332 TCCGAGACACGCAAA GACCGGCCG AAGC CGGCCGGTC TTTGTTATCACGGAT TERM 1378 1539349 - 1539370 + T 100 -17.3 -4.30987 | opp_overlap 1539349 1539332, overlap 1539345 TCCGAGACACGCAAA GACCGGCCG AAGC CGGCCGGTC TTTGTTATCACGGAT RPE_1369 1539611 - 1539393 - | CsbD-like protein TERM 1379 1539905 - 1539918 + H 83 -9.5 -4.28774 | AAATGATCCATCTTT GCGGC GGTT GCCGC TTTTGGATTAACTGG TERM 1380 1541704 - 1541751 + G 70 -13.5 -3.05294 | gap 3, overlap 1541748 TGAGCGTGGAATGGC GCGTGGTCGACACCGG-CATCGGC ATC GCCGACGACCGG-GTCGGCT-CGC TGTTCAGCGATTTCG RPE_1370 1540128 - 1542764 + | multi-sensor hybrid histidine kinase RPE_1371 1542866 - 1543297 + | glyoxalase/bleomycin resistance protein/dioxygenase RPE_1372 1543317 - 1543799 + | 3-demethylubiquinone-9 3-methyltransferase TERM 1381 1543858 - 1543823 - f 95 -18.6 -3.45023 | TCACGATGACGAGAA TGACTACTGACGAATA TTGA CATTCGTCAGTAGTCA TCGCAAAATTCCGAC RPE_1373 1543900 - 1545003 + | RND family efflux transporter MFP subunit TERM 1382 1545699 - 1545663 - g 79 -4.1 -4.86731 | overlap 1545664 GCTGGCGAAACAAAA CGCCGTGGTGCCGGCCG GCA CGGTCGAGACCTCCTCG CAGCGCGTGGCGCTG RPE_1374 1545019 - 1548156 + | acriflavin resistance protein RPE_1375 1548174 - 1548785 + | TetR family transcriptional regulator RPE_1376 1548931 - 1549560 + | hypothetical protein TERM 1383 1549548 - 1549572 + F 73 -11.3 -3.53811 | GATGTTCGAGATGCC GCGCCCGGCGT GAG ACGCCTGGGGC TTTAACCAGGATCGC RPE_1377 1549683 - 1550507 + | DeoR family transcriptional regulator glpD 1550650 - 1552194 + | glycerol-3-phosphate dehydrogenase TERM 1384 1552508 - 1552472 - g 80 -9.4 -4.2558 | gap 1, overlap 1552474 GAGCGTCTATGAAAA CATCGCCTCGCCGCTGC GGGT GCAGCG-CAAGCCGAAG GCCGAAATCGAAAAA TERM 1385 1552506 - 1552474 - g 73 -10.6 -3.73042 | gap 1, overlap 1552472 GCGTCTATGAAAACA TCGCCTCGCCGCTGC GGGT GCAGCG-CAAGCCGA AGGCCGAAATCGAAA RPE_1379 1552191 - 1553270 + | ABC transporter related RPE_1380 1553283 - 1554386 + | ABC transporter related RPE_1381 1554386 - 1555288 + | binding-protein-dependent transport systems inner membrane component RPE_1382 1555288 - 1556094 + | binding-protein-dependent transport systems inner membrane component TERM 1386 1556272 - 1556215 - f 100 -24.2 -3.14931 | CGGATTGCGCAGCAA TCCGGGTGAGGGGGCCTGTCGCCGAG CGAGAC CTCGCGGATATGCCCCCTCACCCGGA CGACCCGCTGCGCGT TERM 1387 1556521 - 1556464 - f 100 -24.2 -3.14931 | CGGATTGCGCAGCAA TCCGGGTGAGGGGGCCTGTCGCCGAG CGAGAC CTCGCGGATATGCCCCCTCACCCGGA TCACCCGCTGCGCGT TERM 1388 1556770 - 1556713 - f 100 -24.2 -3.14931 | CGGATTGCGCAGCAA TCCGGGTGAGGGGGCCTGTCGCCGAG CGAGAC CTCGCGGATATGCCCCCTCACCCGGA TCACCCGCTGCGCGT RPE_1383 1556874 - 1557203 + | hypothetical protein TERM 1389 1558830 - 1558796 - g 74 -14.9 -3.02144 | opp_overlap 1558795 CGAGTGGCGCGAAGA CGCCGCAGGCGGCGA TGGAT TCGCTGGCCGCGGCG CAGGATTCGGTGCTG RPE_1384 1557268 - 1559064 + | extracellular solute-binding protein TERM 1390 1559310 - 1559346 + T 81 -8 -4.51812 | gap 1, opp_overlap 1559296 1559318, overlap 1559318 AGCCGGGAGCGCGAT ACGAC-AAAGGCCGGGA GCGA TCCCGGCCTTTTGCTGA TTTGTTGTTGTGCGA TERM 1391 1559337 - 1559318 - T 93 -15 -4.0162 | opp_overlap 1559310 1559318, overlap 1559296 GCGCGATACGACAAA GGCCGGGA GCGA TCCCGGCC TTTTGCTGATTTGTT TERM 1392 1559318 - 1559337 + T 100 -15 -4.41897 | opp_overlap 1559296 1559318, overlap 1559310 GCGCGATACGACAAA GGCCGGGA GCGA TCCCGGCC TTTTGCTGATTTGTT TERM 1393 1559431 - 1559380 - T 91 -9.2 -4.43477 | gap 1, opp_overlap 1559380 1559382 1559384 1559386, overlap 1559381 1559382 GCTACCCAATCAAAA TCGTCATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATCTCTC TTTGCTACAATCTCT TERM 1394 1559380 - 1559431 + T 71 -9.2 -3.75933 | gap 1, opp_overlap 1559380 1559381 1559382, overlap 1559382 1559384 1559386 GCTACCCAATCAAAA TCGTCATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATCTCTC TTTGCTACAATCTCT TERM 1395 1559430 - 1559381 - T 74 -12.7 -3.25604 | gap 1, opp_overlap 1559380 1559382 1559384 1559386, overlap 1559380 1559382 CTACCCAATCAAAAT CGTCATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATCTCT CTTTGCTACAATCTC TERM 1396 1559382 - 1559429 + T 89 -16.2 -3.46088 | gap 1, opp_overlap 1559381 1559380 1559382, overlap 1559380 1559384 1559386 TACCCAATCAAAATC GTCATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATCTC TCTTTGCTACAATCT TERM 1397 1559429 - 1559382 - T 80 -16.2 -2.54881 | gap 1, opp_overlap 1559382 1559380 1559384 1559386, overlap 1559381 1559380 TACCCAATCAAAATC GTCATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATCTC TCTTTGCTACAATCT TERM 1398 1559384 - 1559427 + T 91 -17.4 -3.29972 | gap 1, opp_overlap 1559382 1559381 1559380, overlap 1559382 1559380 1559386 CCCAATCAAAATCGT CATTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAATC TCTCTTTGCTACAAT TERM 1399 1559386 - 1559425 + T 95 -20 -3.21269 | gap 1, opp_overlap 1559382 1559381 1559380, overlap 1559384 1559382 1559380 CAATCAAAATCGTCA TTCCGGG-GCGCGCGCCGC GCA GCGGCGGGCGAACCCGGAA TCTCTCTTTGCTACA RPE_1385 1560605 - 1559505 - | NADH:flavin oxidoreductase/NADH oxidase TERM 1400 1560637 - 1560625 - R 75 -3.3 -4.84017 | overlap 1560626 AAGCCTTCAGAAAAA TGGTC TGT GACCT GGAACTGGGCATCGG RPE_1386 1561847 - 1560786 - | inner-membrane translocator RPE_1387 1562895 - 1561858 - | inner-membrane translocator TERM 1401 1562962 - 1562909 - R 78 -14.5 -3.09635 | opp_overlap 1562921 1562956, overlap 1562913 1562917 1562921 ATTGCGAGGAGCGAA GCGACGAAGCAATCCAGGGGCTCCG TGCT CGGCGTTCCTGGATTGCTTCGCCTT CGGCTCGCAATGACG TERM 1402 1562958 - 1562913 - R 91 -20.5 -2.55544 | opp_overlap 1562921 1562956, overlap 1562909 1562917 1562921 CGAGGAGCGAAGCGA CGAAGCAATCCAGGGGCTCCG TGCT CGGCGTTCCTGGATTGCTTCG CCTTCGGCTCGCAAT TERM 1403 1562954 - 1562917 - R 76 -14.1 -3.22388 | opp_overlap 1562921, overlap 1562913 1562909 1562921 GAGCGAAGCGACGAA GCAATCCAGGGGCTCCG TGCT CGGCGTTCCTGGATTGC TTCGCCTTCGGCTCG TERM 1404 1562921 - 1562950 + r 72 -12.1 -3.37612 | opp_overlap 1562917 1562913 1562909 1562921 GAAGCGACGAAGCAA TCCAGGGGCTCCG TGCT CGGCGTTCCTGGA TTGCTTCGCCTTCGG RPE_1388 1563721 - 1562999 - | ABC transporter related TERM 1405 1563383 - 1563425 + g 72 -5.3 -4.41494 | gap 1, overlap 1563385 GAAGATCCAGTCCAG CCGCGTGGGGTCCGGCGCGC CGTC GCGCGCC-GCCAGCACGAAG TTTTCCTTCACCGTG RPE_1389 1564482 - 1563718 - | ABC transporter related TERM 1406 1564098 - 1564127 + g 85 -13.6 -4.07568 | gap 1, opp_overlap 1564118 CGCTGTCGAGGATTT CGTCGGCGCGGTC GATCA GATCGCGCCG-CG TTTTCCACGGCCGCA RPE_1390 1565837 - 1564659 - | extracellular ligand-binding receptor RPE_1391 1567269 - 1565920 - | lytic murein transglycosylase RPE_1392 1567538 - 1567266 - | addiction module antitoxin RPE_1393 1567901 - 1567548 - | addiction module antitoxin RPE_1394 1569382 - 1567940 - | XRE family transcriptional regulator TERM 1407 1568255 - 1568229 - G 71 -2.9 -4.65895 | gap 1, overlap 1568231 1568232 TGCGCGATCGAAAAA TAGCG-GCTGCC GTCC GGCAGCTCGATC ACCTGCTTCAACAGC RPE_1395 1569592 - 1571226 + | isocitrate lyase RPE_1396 1571248 - 1571463 + | hypothetical protein TERM 1408 1571494 - 1571535 + F 86 -12.9 -4.07568 | opp_overlap 1571486 1571496, overlap 1571502 AAGAAGACGTCCAAG GACTGACGGCCCCATCCGC TCGC GCGGGTGGGGCTGTTGGCG TTTTGAGGGGGCACG TERM 1409 1571502 - 1571527 + F 91 -18.3 -3.15366 | opp_overlap 1571496 1571486, overlap 1571494 GTCCAAGGACTGACG GCCCCATCCGC TCGC GCGGGTGGGGC TGTTGGCGTTTTGAG TERM 1410 1572094 - 1572123 + G 70 -13.5 -3.05384 | overlap 1572076 GCTGATCGAGCGCGA GCAGGCGATGGTG TCGA CGCCGTCGCCGGC TTCGGTCGCCGCCGA RPE_1397 1571696 - 1572241 + | hypothetical protein RPE_1398 1573141 - 1572242 - | metallophosphoesterase RPE_1399 1573285 - 1573779 + | NUDIX hydrolase TERM 1411 1574195 - 1574216 + G 72 -13 -3.14132 | GCTGGGGCGCGAGAC GCCGGCCA GCATGG TGGCCGGC TTCATCGCCGCGGCG TERM 1412 1575679 - 1575660 - g 72 -11.4 -3.53012 | TTTTCGGGGCCCAAA GCGTCGCA GCCG CGCGACGC GGCGCGCCTTCCCGG RPE_1400 1574025 - 1575764 + | MscS mechanosensitive ion channel RPE_1401 1575886 - 1576434 + | GCN5-related N-acetyltransferase TERM 1413 1576439 - 1576494 + T 73 -8.4 -4.04318 | gap 5, opp_overlap 1576483, overlap 1576439 1576477 1576480 GGGCGGGGTAGTCCA CC-GTGTCCCGG-GC-GC-GATGCAGCGC GTA GCGCTGC-TCAGCAGAACCGGGACCCCGG TTTCTACTGTCTCCG RPE_1402 1577123 - 1576602 - | GCN5-related N-acetyltransferase RPE_1403 1577407 - 1577120 - | hypothetical protein TERM 1414 1577895 - 1577839 - R 70 -7.8 -4.07568 | gap 1, overlap 1577851 1577891 GCGCGCGCCCCAAAA TGACTCACGGAAGGCG-GCGGCGTCGG AGGT CCGACGCCGCGCGCGGTCAGAACTTCA GGTTGGCGAACGCGC TERM 1415 1577883 - 1577851 - R 88 -17 -3.09208 | gap 1, overlap 1577839 AAATGACTCACGGAA GGCG-GCGGCGTCGG AGGT CCGACGCCGCGCGCG GTCAGAACTTCAGGT RPE_1404 1580224 - 1577885 - | TonB-dependent receptor TERM 1416 1577954 - 1577969 + g 72 -5.4 -4.4078 | gap 1, opp_overlap 1577956, overlap 1577956 GTCCTTGTTGTAGGA CA-CCGC GTT GCGGATG TTTTCGTTCAGGAGA TERM 1417 1578739 - 1578718 - G 81 -15.1 -3.53563 | ACAGGTTGCGCGAAA CCGCCGGCC CGAT GGCCGACGG ATCGGTCGCAAGATC TERM 1418 1579147 - 1579175 + g 70 -13.2 -3.06261 | gap 1, opp_overlap 1579143 1579142, overlap 1579160 CGGCCCAGAACCGGA TCGCCTCGATCGC GATG GCG-TCGGGGCGA TATTCGCCCTTGGCG RPE_1405 1580734 - 1580354 - | hypothetical protein TERM 1419 1580909 - 1580868 - R 72 -13.8 -2.82623 | gap 3, overlap 1580866 1580865 1580891 GCCGGCCCACAATGA GGCCATCATCGGC-CTCGGCC AAA GGCCGAGCGCCG--GTTGGCC GGGGAGGCTGGCGCC RPE_1406 1581502 - 1580966 - | hypothetical protein RPE_1407 1581833 - 1581531 - | hypothetical protein RPE_1408 1582009 - 1582473 + | hypothetical protein RPE_1409 1582561 - 1583241 + | ribonuclease T2 TERM 1420 1584107 - 1584164 + G 73 -10.6 -3.72576 | gap 3, opp_overlap 1584128 1584130, overlap 1584108 1584155 CATCTACGCGGTGCG GGTCGGGCTCGGCGGCCAGAAGATCGACG CGG TGGCGAATTTC-GGCCGCCG-GCC-GACG TTTGATAACGGCGCG TERM 1421 1584108 - 1584163 + G 71 -14.1 -2.83403 | gap 3, opp_overlap 1584128 1584130, overlap 1584107 1584155 ATCTACGCGGTGCGG GTCGGGCTCGGCGGCCAGAAGATCGACG CGG TGGCGAATTTC-GGCCGCCG-GCC-GAC GTTTGATAACGGCGC RPE_1410 1583403 - 1584386 + | riboflavin biosynthesis protein RibF RPE_1411 1584407 - 1584943 + | hexapaptide repeat-containing transferase RPE_1412 1585399 - 1584953 - | hypothetical protein RPE_1413 1585816 - 1585406 - | hypothetical protein ileS 1585972 - 1589148 + | isoleucyl-tRNA synthetase TERM 1422 1589429 - 1589442 + G 78 -5.9 -4.60487 | overlap 1589430 GCCGGCGCGGGGCGG TGGCG GTGA CGCCG TTTTTCGACCTGGTG RPE_1415 1589215 - 1589814 + | lipoprotein signal peptidase RPE_1416 1589893 - 1590630 + | hypothetical protein TERM 1423 1590680 - 1590696 + G 79 -5 -4.81551 | opp_overlap 1590679 1590680, overlap 1590682 1590683 1590689 TCCTGCGGCGAAAAC GCCGCG CTCGC CGCGCC TTTTTCGTGTGGCTC TERM 1424 1590969 - 1590957 - g 70 -2.6 -4.67011 | overlap 1590959 1590960 AAGGGCACCGAAAAA CACC CGGCC GGCG AGTTCAGCCAGACCG TERM 1425 1591292 - 1591281 - g 81 -5.8 -4.7173 | opp_overlap 1591283, overlap 1591273 1591283 CAGGAGATCGAAAAA CTCG ACCG CGAG GACGCGCTGGCGTTC RPE_1417 1590660 - 1592069 + | peptidase M16 domain-containing protein RPE_1418 1592066 - 1593442 + | peptidase M16 domain-containing protein TERM 1426 1594174 - 1594142 - g 100 -12.7 -4.62069 | gap 1, overlap 1594121 1594122 CCTCGAGGGCAAAAA GCGCCGCGGC-GAC ATCAAG GCCGGCCGCGGCAC GGCGCGGATCGAGGA RPE_1419 1593768 - 1594193 + | hypothetical protein TERM 1427 1594209 - 1594259 + F 100 -18.4 -3.55444 | gap 2, overlap 1594210 1594211 ACGCGGTTAGAGTCG TGTCCCGGA-C-GCGGTGCGGCAT TCTTC ATGCCGCTCCGCAGATCCGGGACC TTTACAAAGTCAGCA TERM 1428 1594210 - 1594258 + F 100 -21.9 -2.73124 | gap 2, overlap 1594209 1594211 CGCGGTTAGAGTCGT GTCCCGGA-C-GCGGTGCGGCAT TCTTC ATGCCGCTCCGCAGATCCGGGAC CTTTACAAAGTCAGC TERM 1429 1595424 - 1595457 + G 80 -13.8 -3.737 | overlap 1595425 AGGCCAACGCTCGGC GGCGGCCAGCGTCG ATGGCG CGACGCTGGCGGCA TTTCGTCCGGGCTTC TERM 1430 1595425 - 1595456 + G 82 -17.3 -2.83899 | overlap 1595424 GGCCAACGCTCGGCG GCGGCCAGCGTCG ATGGCG CGACGCTGGCGGC ATTTCGTCCGGGCTT mutL 1594417 - 1596228 + | DNA mismatch repair protein TERM 1431 1596217 - 1596255 + F 79 -9.5 -4.18018 | gap 1, overlap 1596217 1596234 ATCGAGAAGTTGTTC GG-GCGGAGGTAGTTCGC GCTC GCGCGTTCCCTCCGCACC TTTTGCGTCCAAAAG RPE_1421 1596408 - 1596671 + | CopG/Arc/MetJ family transcriptional regulator RPE_1423 1598292 - 1597180 - | branched-chain amino acid aminotransferase TERM 1432 1597332 - 1597298 - G 73 -4.1 -4.65895 | overlap 1597317 CCGTTGATGGAAAAA TCGCCGCTGGCCGAG CACAC CTTGCCGATCGGCGA GATCACCGCCGCGGT RPE_1424 1598571 - 1599119 + | MarR family transcriptional regulator TERM 1433 1599205 - 1599223 + G 74 -10.3 -3.85698 | CGACGACCGCCGCAT TCGCGAC CTGCT GTCGCGA TTTCTGGCGAGCGAA RPE_1425 1599116 - 1599838 + | two component transcriptional regulator TERM 1434 1600085 - 1600064 - f 73 -8.6 -4.07568 | CCTCTCCCCGCAAAA GCGGGGCG AGGGAG CGCGCCGC ATGCGCGGGGGCCTC TERM 1435 1600572 - 1600541 - g 77 -13 -3.57462 | gap 1, opp_overlap 1600546 1600561 CAGTCGATCTCCAAA CAGATCGGCCG-GCA GAT CGCGCGGCCGTTCTG GATCGACACCGTCGG TERM 1436 1600702 - 1600738 + G 91 -16.6 -3.85698 | CCTGTTCTGGATGGT CGGCACCTCGACCATC CTGCT GGTGGTCGCGGTGCTG TTTCTGCGCAACCAG RPE_1426 1600130 - 1601518 + | periplasmic sensor signal transduction histidine kinase RPE_1427 1602578 - 1601712 - | pyrroline-5-carboxylate reductase RPE_1428 1603164 - 1602664 - | hypothetical protein TERM 1437 1603427 - 1603412 - H 72 -2.6 -4.78237 | gap 1, overlap 1603414 GAGCGGAGAACAAAA CG-GAAT CGG ATTCGCG CGTTACGAGTCCCGC RPE_1429 1603589 - 1604104 + | riboflavin synthase subunit beta TERM 1438 1604215 - 1604235 + T 74 -11.9 -3.45134 | opp_overlap 1604215 AGCGAAGCGAAGCAA TCCAGTGCG CCG TGCACTGGA TTCTGGATTGCTTCG TERM 1439 1604235 - 1604215 - T 71 -11.2 -3.40788 | opp_overlap 1604215 AGCGAAGCGAAGCAA TCCAGTGC GCCGT GCACTGGA TTCTGGATTGCTTCG RPE_1430 1605444 - 1604491 - | ribose-phosphate pyrophosphokinase TERM 1440 1605276 - 1605292 + g 80 -9.4 -4.29738 | opp_overlap 1605274 1605271 1605270 1605276 ACTGGATAATGAACA CGTCCG AGCCG CGGACG TTTTCCTGGATCTCG RPE_1431 1606236 - 1605619 - | hypothetical protein TERM 1441 1605694 - 1605734 + g 73 -13.3 -3.21912 | CTCGGCGGCGGCAAT CGCCGGACCGCGGC-TCGG CGGGC CCGGCGCGGCG-TCCGGCG TTGGTGCATTGAGGG RPE_1432 1607176 - 1606409 - | hypothetical protein TERM 1442 1607008 - 1607030 + g 71 -12.6 -3.29144 | opp_overlap 1606988, overlap 1607009 GCGGCGCCACGCCGA TCGCCGCCGC CAT GCGCCGGCGG TTCTCCGCGACATGG RPE_1433 1608291 - 1607173 - | hypothetical protein TERM 1443 1607545 - 1607592 + g 72 -13.2 -3.14132 | overlap 1607580 1607581 CTGAAAAGTGTCGCC GGCGTCGCTGCGCAGATGGCCG TAAT CGATGATCAGCGCCGCGCCGCC TTCGTCGCGGACCCG TERM 1444 1608243 - 1608255 + g 70 -6.3 -4.28111 | overlap 1608234 CCGGCATCGGCCCGG CTGAT CTG ATCAG TTTCTTGATGGTGTC RPE_1434 1609156 - 1608311 - | prolipoprotein diacylglyceryl transferase RPE_1435 1609418 - 1609699 + | hypothetical protein TERM 1445 1610654 - 1610697 + F 70 -7.2 -4.07568 | gap 1, opp_overlap 1610628 1610657 TGTTTTCACTGCACA CGAGGCCGCG-GGTGCATCGG CAC CCGGCGTTCCGCACGCCCTCG TTTTGGAAGAGGGCG TERM 1446 1610750 - 1610729 - f 75 -13.7 -3.09175 | gap 1 AACGTTCACCCAAGA CCCG-GGCGC CAC GCGCCGCGGG AACGGGAAATTGCGC TERM 1447 1611144 - 1611170 + F 70 -7.8 -4.07568 | opp_overlap 1611148 1611149, overlap 1611133 1611149 GCTTGCTGCGCCGTG GAAACGGGCCGC TTT GCGGCCCTTAAC TTTTGCAACCGAGAG TERM 1448 1611166 - 1611148 - f 74 -11.6 -3.53012 | opp_overlap 1611133 1611144 1611149, overlap 1611149 GCTGCGCCGTGGAAA CGGGCCGC TTT GCGGCCCT TAACTTTTGCAACCG TERM 1449 1611149 - 1611165 + F 84 -15.1 -3.36823 | opp_overlap 1611148 1611149, overlap 1611133 1611144 CTGCGCCGTGGAAAC GGGCCGC TTT GCGGCCC TTAACTTTTGCAACC TERM 1450 1611165 - 1611149 - f 78 -15.1 -2.71712 | opp_overlap 1611133 1611149 1611144, overlap 1611148 CTGCGCCGTGGAAAC GGGCCGC TTT GCGGCCC TTAACTTTTGCAACC RPE_1437 1611252 - 1611956 + | 50S ribosomal protein L25/general stress protein Ctc TERM 1451 1612100 - 1612063 - g 75 -12 -3.74693 | gap 1, opp_overlap 1612064 1612065 1612068, overlap 1612064 TGGCACTCGACGAAA TCGCACGGCGTCATGGC TTCTC GCCATGGCGCCGT-CGC TTTCAGGGCGAGACC TERM 1452 1612099 - 1612064 - g 76 -15.5 -2.84602 | gap 1, opp_overlap 1612064 1612065 1612068, overlap 1612063 GGCACTCGACGAAAT CGCACGGCGTCATGGC TTCTC GCCATGGCGCCGT-CG CTTTCAGGGCGAGAC TERM 1453 1612064 - 1612099 + G 85 -17.7 -2.71712 | gap 1, opp_overlap 1612064 1612063, overlap 1612065 1612068 GGCACTCGACGAAAT CGCACGGCGTCATGGC TTCTC GCCATGGCGCCGT-CG CTTTCAGGGCGAGAC TERM 1454 1612065 - 1612100 + G 90 -17.7 -3.53012 | gap 1, opp_overlap 1612064 1612063, overlap 1612064 1612068 GCACTCGACGAAATC GC-ACGGCGTCATGGC TTCTC GCCATGGCGCCGTCGC TTTCAGGGCGAGACC TERM 1455 1612068 - 1612096 + G 85 -18.2 -2.64155 | opp_overlap 1612064 1612063, overlap 1612064 1612065 CTCGACGAAATCGCA CGGCGTCATGGC TTCTC GCCATGGCGCCG TCGCTTTCAGGGCGA TERM 1456 1612185 - 1612207 + G 76 -8.3 -4.16842 | ATGAACGACTCCGGG CGCGCGGTG CAGGA CGCCGCGAG TTTCTTCAAGCTCGG RPE_1438 1611978 - 1612583 + | peptidyl-tRNA hydrolase TERM 1457 1613200 - 1613190 - g 74 -2.4 -4.74801 | overlap 1613179 TAACCTGACCAAAAA GGCC AAA GGCA ACGACAAGGACGCCA RPE_1439 1612672 - 1613835 + | translation-associated GTPase RPE_1440 1614303 - 1614010 - | hypothetical protein RPE_1441 1614414 - 1614869 + | dehydratase RPE_1442 1614879 - 1615361 + | dehydratase TERM 1458 1615346 - 1615387 + F 70 -7.9 -4.08945 | gap 1, overlap 1615335 TTTTGTGCCACGACG TG-CGTCGACGTCGTGAGCG GTT CGCTGCCGGCGTCTGCGGCA TTTTAACGAAATCGT RPE_1443 1615503 - 1615661 + | hypothetical protein TERM 1459 1615781 - 1615796 + T 70 -10.4 -3.65046 | overlap 1615777 CCGTCATTCGCGGCC GAGCGC TTCG GCGCTC TTCTTCCACTGCGCC RPE_1444 1616200 - 1615769 - | hypothetical protein TERM 1460 1615969 - 1615997 + g 73 -10.9 -3.63515 | opp_overlap 1615965 CGGCCAAAGAGGTGC CGGCGACGCGCTG GAT CAGCGAGTTGACG TTGTTGACGGTGGCC RPE_1445 1616634 - 1616377 - | hypothetical protein RPE_1446 1617433 - 1616732 - | fumarylacetoacetate (FAA) hydrolase TERM 1461 1617520 - 1617546 + r 73 -10.9 -3.61398 | gap 1, opp_overlap 1617519 TTACGCGGAAGCGAC CACCGGCGCCGA GGGC TCGGCG-TGGTG TTGTTGCAGGCGGAA RPE_1447 1619307 - 1617505 - | ABC transporter related RPE_1448 1620499 - 1619486 - | UDP-glucose 4-epimerase TERM 1462 1621438 - 1621400 - g 74 -15.2 -3.05384 | overlap 1621385 1621425 CGCCTGCGCAGCGAA CGGCTGCACGCGGCGATT CCG AACAGTCGCGTGCTGCCG CGGCAATCGCTCGAT RPE_1449 1620734 - 1621678 + | lipopolysaccharide heptosyltransferase I RPE_1450 1622208 - 1621675 - | histidinol-phosphate phosphatase family protein RPE_1451 1623290 - 1622205 - | lipopolysaccharide heptosyltransferase II TERM 1463 1623479 - 1623491 + G 73 -6.2 -4.4009 | CCATGCTGCTGGTGA CCGG AGGGG CCGG TTTTATCGGATCGAA RPE_1452 1623466 - 1624446 + | ADP-L-glycero-D-manno-heptose-6-epimerase RPE_1453 1624458 - 1625930 + | rfaE bifunctional protein TERM 1464 1626120 - 1626137 + G 75 -14.1 -3.34398 | overlap 1626119 CCGATCTGGCCGATC GCGCCGC CACC GCGGCGC TGTTTGCCAAGCACA RPE_1454 1625927 - 1626910 + | NAD-dependent epimerase/dehydratase RPE_1455 1627096 - 1628100 + | oxidoreductase domain-containing protein TERM 1465 1628120 - 1628155 + F 76 -7.4 -4.26079 | overlap 1628124 1628128 TGACCGGTGCTTTGA CGAGCTGACGCCGCGC GCCT GCGCGGCGTTTCGTTG TTTTCCGTGCTTTCA TERM 1466 1628124 - 1628152 + F 76 -8.8 -4.23486 | gap 1, overlap 1628120 1628128 CGGTGCTTTGACGAG C-TGACGCCGCGC GCCT GCGCGGCGTTTCG TTGTTTTCCGTGCTT TERM 1467 1628128 - 1628147 + F 100 -16.4 -4.20834 | overlap 1628124 1628120 GCTTTGACGAGCTGA CGCCGCGC GCCT GCGCGGCG TTTCGTTGTTTTCCG TERM 1468 1628504 - 1628518 + G 91 -12.8 -4.29738 | AAGTGGTGGCGCTGA CCGGCG CGA CGCCGG TTTTCGTCGATGTCG RPE_1456 1628197 - 1629345 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1469 1629467 - 1629424 - f 70 -12.4 -3.13073 | gap 1, opp_overlap 1629422 1629421, overlap 1629422 1629420 1629426 ATTGTTATGAAGAGA GATTTCGGGTTCGCGCGCAGC TTC GCTGCACGCGC-CCCGGAATG ACGTTGTGGTTTGAG TERM 1470 1629465 - 1629426 - f 80 -15 -3.12449 | gap 1, opp_overlap 1629422 1629421, overlap 1629424 1629422 1629420 TGTTATGAAGAGAGA TTTCGGGTTCGCGCGCAGC TTC GCTGCACGCGC-CCCGGAA TGACGTTGTGGTTTG TERM 1471 1629640 - 1629652 + G 74 -2.6 -4.72986 | overlap 1629634 TCTCGGCGCGGGGCC GGTG GCGGA CGCC TTTTTCGTGGCGCTG TERM 1472 1629821 - 1629839 + G 82 -6.6 -4.71426 | TTCGTGACGCAGGCG GTGCTGCT GGC GGCGGCGC TTTTGTTCATGCCGC TERM 1473 1630154 - 1630177 + G 83 -15.3 -3.53012 | CTGGCGCAGGATGCT GCGCGGCAG GGCCTG CTGCCGCGC TTTGCCCGGCCGAAA TERM 1474 1630196 - 1630213 + G 70 -2.5 -4.66609 | overlap 1630198 GCCCGGCCGAAACTC GACGAGG ACGT CCGCGCC TTTTTCCGTGCGCTG TERM 1475 1630706 - 1630668 - g 73 -15.2 -2.90194 | ACGCCCGCAAGGACA CTGCGACGCCGGTGAAGG CGG CGCTGACCGGCGTCGCCG TCAATGTCGCCCTCA RPE_1457 1629539 - 1631068 + | integral membrane protein MviN RPE_1458 1632957 - 1631065 - | carbamoyltransferase TERM 1476 1633491 - 1633540 + G 71 -12.7 -3.28712 | overlap 1633483 1633492 GCGGATGGGACCGCG GCCGGGGCCGTGGACGCGGCTAT GGCT ATGGCCGCGGACGTGGCTTCGGA TTCTACGGCGCGCCG TERM 1477 1633492 - 1633539 + G 77 -16.2 -2.57132 | overlap 1633483 1633491 CGGATGGGACCGCGG CCGGGGCCGTGGACGCGGCTAT GGCT ATGGCCGCGGACGTGGCTTCGG ATTCTACGGCGCGCC RPE_1459 1633229 - 1633615 + | hypothetical protein TERM 1478 1633695 - 1633667 - f 83 -13.1 -3.89614 | opp_overlap 1633667 TTGAACTGCGACAAA CGGGTGTGCCG GCGCGAT CGGCACGCCCG TTTTGCTGTTCAGGG TERM 1479 1633667 - 1633695 + F 100 -16 -4.4261 | opp_overlap 1633667 TTGAACTGCGACAAA CGGGTGTGCCGG CGCGA TCGGCACGCCCG TTTTGCTGTTCAGGG RPE_1460 1633798 - 1636101 + | carbon-monoxide dehydrogenase RPE_1461 1636299 - 1636748 + | cytochrome c, class II RPE_1462 1636785 - 1637882 + | putative diheme cytochrome c-553 TERM 1480 1638900 - 1638883 - g 83 -4.1 -5.252 | gap 1 CATCGCCACAAAAAA CACCCACG GCA CG-GGATG TTCGCTGTCGTCGGC RPE_1463 1638263 - 1639072 + | phosphomethylpyrimidine kinase TERM 1481 1639093 - 1639081 - f 71 -9.1 -3.68569 | opp_overlap 1639082 GGACTGATCGAACAA GGCTG GCG CAGCC GCATTTGTCCCTTGC TERM 1482 1639803 - 1639834 + G 100 -20.2 -2.9039 | CAAGGACGCGATCCT GGTCGAGCGGCGGA AGAT TCCGCCGTTCGGCC TCTATACACTGGTGT RPE_1464 1639228 - 1639884 + | phosphatidylethanolamine N-methyltransferase TERM 1483 1639881 - 1639868 - f 71 -9.5 -3.81027 | overlap 1639862 1639869 TTGAACGAACGCAAA CGCCG TTGG CGGCG TGAAGGTCATCCCGC TERM 1484 1640017 - 1640033 + G 70 -3.6 -4.44046 | overlap 1640018 GCACGCGGTTGCCAG GCCAGC CAGTT GCTGGA TTTCTTTCGCGTCCA RPE_1465 1639939 - 1640736 + | metallophosphoesterase RPE_1466 1640738 - 1641793 + | glycosyl transferase, group 1 TERM 1485 1642432 - 1642487 + G 71 -14.6 -2.62184 | gap 1 GCCGGCCTCGGGCGG TGGGCTGCTCGCCGGCATTGCGGTCGC GGT GCGCTCGCATTGCCCGCAAGC-GACCA TCCTGTGCGCCGAGC TERM 1486 1642639 - 1642690 + G 72 -5.1 -4.36903 | gap 3 GATCAATCACCGTTT GCTGGCGCGCGGGCTGACCGTTTCGG ATG CCGAGGTGG-CGGCC-GCG-GTGGGC TTTGTGTTTCGTGAG RPE_1467 1641860 - 1642897 + | pyridoxal-5'-phosphate-dependent enzyme, beta subunit RPE_1468 1644231 - 1642867 - | hypothetical protein TERM 1487 1644905 - 1644949 + G 100 -11.2 -4.60487 | gap 1, overlap 1644906 GCCCCGGCCAGGCCT GCCGCGG-CGCTCGCCCGCGC CGGC GCGCTGCTGCGCGACCGCGGG TTTTTGGCGATCATC TERM 1488 1644906 - 1644948 + G 80 -14.7 -3.3581 | gap 1, overlap 1644905 CCCCGGCCAGGCCTG CCGCGG-CGCTCGCCCGCGC CGGC GCGCTGCTGCGCGACCGCGG GTTTTTGGCGATCAT RPE_1469 1644308 - 1645498 + | major facilitator transporter RPE_1470 1646515 - 1645505 - | mandelate racemase/muconate lactonizing protein TERM 1489 1646015 - 1646038 + g 72 -5.8 -4.32046 | overlap 1645978 1645997 GACCGCGGCGATGCG CGCGGCGTCG TCGT CGGAGCCGAG TTTGATTTTTAGCAG RPE_1471 1646683 - 1647816 + | hypothetical protein RPE_1472 1647819 - 1648589 + | ABC transporter related RPE_1473 1648606 - 1649487 + | hypothetical protein TERM 1490 1649708 - 1649722 + T 71 -9.2 -3.74872 | opp_overlap 1649708 CGCTCCTCGCAATGA CGGGGC TGA GTCCCG TTTCGTCAAATCCCT TERM 1491 1649869 - 1649837 - T 91 -19.3 -2.83403 | opp_overlap 1649842, overlap 1649842 CCTCGGGGACGAAAC GAAAAGGGCGGAAGC CGT GCTTCCGCCCTTTTG CATTCATGATGGAGC TERM 1492 1649842 - 1649864 + T 100 -19.2 -4.30416 | opp_overlap 1649837 1649842 GGGACGAAACGAAAA GGGCGGAAGC CGT GCTTCCGCCC TTTTGCATTCATGAT TERM 1493 1649864 - 1649842 - T 100 -19.2 -4.58773 | opp_overlap 1649842, overlap 1649837 GGGACGAAACGAAAA GGGCGGAAGC CGT GCTTCCGCCC TTTTGCATTCATGAT RPE_1474 1656244 - 1649891 - | hypothetical protein TERM 1494 1653511 - 1653528 + g 74 -12.7 -3.5393 | TATCGATTTCGCCGA CCAGCGC GCCC GCGCTGG TTTCCAGACCCTGAT RPE_1475 1656549 - 1656923 + | Hpt protein RPE_1476 1657054 - 1657374 + | ferredoxin TERM 1495 1657463 - 1657496 + T 84 -13.9 -3.78934 | gap 1 AGGCCGTGCGTGTTT CCGTGGATGCCCGGGT CAA GCCCGGGCATG-ACGG TTATTGTGAGGCGCC RPE_1477 1657973 - 1657518 - | thioesterase superfamily protein TERM 1496 1658740 - 1658684 - g 81 -10.8 -4.11394 | gap 2, opp_overlap 1658698 ACCCGATCTGCAAAA GCATGACGCTGGTGCATCGCCGCGACGA TTT TCGCGGCG-CGCCGCAC-AGCGTCGAGC AGATGCGCCAGCTGG RPE_1478 1658149 - 1659177 + | thioredoxin-disulfide reductase RPE_1479 1659551 - 1659270 - | hypothetical protein TERM 1497 1659865 - 1659816 - R 74 -14.7 -2.60075 | overlap 1659815 GTCGGCCGAACGAAG CCGCGATGCCCCGCCTCGCGCGC AGCG GCGGCCGGGGTGGGGCAACGGGG AGGGCGCTTGTTCGC RPE_1480 1660167 - 1659880 - | hypothetical protein RPE_1481 1663383 - 1660183 - | superfamily II DNA/RNA helicase TERM 1498 1662883 - 1662865 - G 71 -3.1 -4.62069 | TTCGTATTCGAAAAA CAGGC CGAGCAAAT GCCTG AGCTTGTCGGTGTCG TERM 1499 1663416 - 1663436 + H 91 -16.9 -3.33696 | overlap 1663391 CCCGGCCTCCGGTGC GCGCGATGC TTT GCATCGCGC TTCGTTCGGCCGACC RPE_1482 1663841 - 1665436 + | periplasmic sensor hybrid histidine kinase RPE_1483 1668047 - 1665555 - | diguanylate cyclase/phosphodiesterase TERM 1500 1668313 - 1668329 + H 70 -10.1 -3.57309 | overlap 1668321 1668322 GGGCTCCTACGACCT TTGGCGG GGG CCGCCGA TTTGCGGCAATTTTG TERM 1501 1669115 - 1669092 - g 70 -10.2 -3.75153 | gap 1, overlap 1669094 CGTCGCCAAGCCAAA GACCGCGCCGG CTC CCGGTGCGG-C GCCGGCTCCGGCCGC TERM 1502 1669114 - 1669094 - g 77 -13.9 -3.46068 | overlap 1669092 TCGCCAAGCCAAAGA CCGCGCCGG CTC CCGGTGCGG CGCCGGCTCCGGCCG RPE_1484 1668457 - 1669137 + | hypothetical protein RPE_1485 1669878 - 1669180 - | diguanylate cyclase RPE_1486 1671176 - 1670079 - | cobalamin B12-binding domain-containing protein RPE_1487 1673553 - 1671544 - | hypothetical protein TERM 1503 1672121 - 1672109 - G 88 -10.5 -4.36914 | TCGTCCTGCACAAAA CCCGC GAC GCGGG CGAGCCGGGCGGGAT RPE_1488 1674130 - 1673612 - | GCN5-related N-acetyltransferase RPE_1489 1674402 - 1674127 - | hypothetical protein RPE_1490 1675584 - 1674484 - | hypothetical protein TERM 1504 1675402 - 1675372 - G 78 -14.6 -3.30124 | opp_overlap 1675375 TGTGAGCGTGCAGAA CGCGCCGACGACGC ACA GCGCGGCCAGCGCG ATCTGGGTCGTCGGC TERM 1505 1675375 - 1675417 + g 100 -17.7 -4.18197 | opp_overlap 1675372 GAGCGTGCAGAACGC GCCGACGACGCACAGCGCG GCCAG CGCGATCTGGGTCGTCGGC TTTTCCCTCAGCCCT TERM 1506 1675568 - 1675553 - G 72 -11.8 -3.53091 | AGCCGTTCCTTGAAA CCGCGC CGCA GCGCGG TCAACACTCGATGCA TERM 1507 1675646 - 1675618 - H 73 -11 -3.55622 | gap 1 GGCAACGCGCTGAAA GCCGGTCCGCGCG ACGA CGCGCAAA-CGGC TGCCAAGCTACTCAT TERM 1508 1675704 - 1675690 - H 80 -5.6 -4.68593 | overlap 1675691 1675692 TCCATTAGGCAAAAA CCGCGC GCG GCGCAA TTGGCATGATGGCAT RPE_1491 1675977 - 1676483 + | hypothetical protein TERM 1509 1676538 - 1676569 + T 100 -25.2 -2.66733 | opp_overlap 1676494, overlap 1676526 GCGACGGGCCGGTGA CGACGCCGCGTCGG GCTC CCGGCGCGGCGTCG TGCTGTCAGTTCAGG RPE_1492 1677014 - 1676580 - | hypothetical protein TERM 1510 1677127 - 1677095 - H 100 -17 -3.59979 | gap 1 GTCTTGTATGCTAAA GCGCGCAG-GCGGGC AAAC GCCCGCGCCGCACGC CGATGGATGCCATGA RPE_1493 1677130 - 1677744 + | hypothetical protein RPE_1494 1677975 - 1679192 + | hypothetical protein RPE_1495 1680411 - 1680163 - | hypothetical protein TERM 1511 1681217 - 1681186 - g 83 -12.3 -4.07568 | gap 1 GGCGGCCGCCGAAAA GC-GCGAGGCGGCA TCGCT TGCAGCCTCGCTGC GCAAGCTGGAACGGC TERM 1512 1681363 - 1681345 - g 85 -13.8 -4.08692 | GAAGGCCTCGCAAAA CGCCGCGG AAG CCGCGACG CAACTCGACGCCGCC TERM 1513 1681643 - 1681624 - g 70 -6.4 -4.21194 | GGTCACGATTCAAAA TCCCGATC GGCC GATCGGCA CCCATGTGTTCACGG TERM 1514 1681773 - 1681728 - g 81 -11 -4.15565 | overlap 1681729 GCGACGACGCCAAAA CCGCGCTCGACCGCATCACG TTTCCG CGGGAGGCGCTCGAGCGCAT CGCGCCGACCGCGGT TERM 1515 1681772 - 1681729 - g 76 -14.5 -3.09018 | overlap 1681728 CGACGACGCCAAAAC CGCGCTCGACCGCATCACG TTTCCG CGGGAGGCGCTCGAGCGCA TCGCGCCGACCGCGG RPE_1496 1680521 - 1682032 + | hypothetical protein RPE_1497 1682569 - 1682144 - | UspA domain-containing protein RPE_1498 1683200 - 1682658 - | putative phosphohistidine phosphatase, SixA TERM 1516 1684519 - 1684550 + G 75 -7.2 -4.36914 | gap 1, overlap 1684520 GTGTGGGCGGGCGGG CGGATCGGCCGGGTC GCC GGCCAGGC-GATCCA TTTTGTCGCCCGCGG RPE_1499 1683355 - 1684782 + | FAD dependent oxidoreductase RPE_1500 1684858 - 1685355 + | methionine sulfoxide reductase B RPE_1501 1685849 - 1685580 - | hypothetical protein RPE_1502 1686125 - 1685853 - | hypothetical protein TERM 1517 1687104 - 1687127 + G 71 -9.5 -3.85698 | opp_overlap 1687095 1687098, overlap 1687108 GCAAGATCACCCCGC TCGCCGGCG GCGTGG CGCCGACGA TTTCTGGAACCGGCG RPE_1503 1686221 - 1688029 + | flagellar basal body FlaE domain-containing protein TERM 1518 1689206 - 1689189 - g 79 -6.9 -4.63218 | TCGGCGCCAAGAAAA CGCTGAC CATC GTCCGCG TCGACGATCCCTCGG RPE_1504 1688078 - 1689967 + | flagellar hook-associated protein TERM 1519 1690269 - 1690252 - g 74 -10.5 -3.75897 | AATTCCGAAGTCAAA GGCGCCG CCGT CAGCGCC GGCAATACGCTCGAT TERM 1520 1691035 - 1691016 - g 75 -11.4 -3.62522 | opp_overlap 1691030 1691030, overlap 1691019 1691020 CAATTTCTTCAACAA CAACCCGC CGCT GCGGGTCG GCGGCACCGCGCCGT TERM 1521 1691032 - 1691019 - g 73 -9.5 -3.9461 | opp_overlap 1691030 1691030, overlap 1691016 1691020 TTTCTTCAACAACAA CCCGC CGCT GCGGG TCGGCGGCACCGCGC RPE_1505 1689976 - 1691580 + | hypothetical protein RPE_1506 1691859 - 1692446 + | sugar isomerase family protein TERM 1522 1692702 - 1692673 - g 80 -15.7 -3.29947 | gap 1, opp_overlap 1692694 GATGGACGAGATGAA TCG-CCGGCTGCGC GCC GCGCTGCCGGTCGA CGACGTCCGGATCTG RPE_1507 1692446 - 1693006 + | histidinol-phosphate phosphatase family protein RPE_1508 1692993 - 1693775 + | putative translaldolase RPE_1509 1693759 - 1694772 + | NAD-dependent epimerase/dehydratase TERM 1523 1695456 - 1695495 + G 79 -12.9 -3.70902 | gap 2, overlap 1695445 GCGACGTCGCCGAGG CGTTCGTC-GCGG-CGGCG GTGA CGCCGATCGCAGGCGAGCG TTTCAATGTCGGCGC TERM 1524 1695722 - 1695754 + G 70 -9.8 -3.6682 | gap 1, opp_overlap 1695706, overlap 1695724 GCTCCGCTGTGGGAG CC-GGCCTCGATCGC CAAA GCGACCGAGACCTGG TTTCGCTACATGAGC RPE_1510 1694783 - 1695778 + | NAD-dependent epimerase/dehydratase RPE_1511 1695791 - 1697341 + | cytidyltransferase-like protein RPE_1512 1697346 - 1698287 + | oxidoreductase domain-containing protein RPE_1513 1698284 - 1699561 + | UDP-glucose/GDP-mannose dehydrogenase RPE_1514 1699572 - 1700450 + | NAD-dependent epimerase/dehydratase RPE_1515 1700443 - 1701099 + | methyltransferase type 11 TERM 1525 1701232 - 1701265 + G 100 -17.4 -4.2803 | opp_overlap 1701227 1701226 CCCCAACAAGGTGAT CGGCGTCGGCCGCA ATCCGC TGCGGCCCGCGCCG TTTTCGCTTCAGATC RPE_1516 1701137 - 1702129 + | dTDP-glucose 4,6-dehydratase RPE_1517 1702134 - 1702955 + | transketolase domain-containing protein RPE_1518 1702959 - 1703876 + | transketolase, central region RPE_1519 1703899 - 1704396 + | hypothetical protein RPE_1520 1704428 - 1705102 + | methyltransferase type 11 TERM 1526 1706072 - 1706094 + G 70 -10.5 -3.66844 | overlap 1706068 CCGAGTCACCGCGCT CGCCGGCCG ATCGG CGGTCGGTG TTCTTCGACTATACG RPE_1521 1705201 - 1706361 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1527 1706683 - 1706697 + G 75 -2.8 -4.7254 | opp_overlap 1706683 1706685, overlap 1706685 AAGAAGCGGGATCAA GACAAT CGG ATTGGC TTTTTCGTCAAGAGT TERM 1528 1706989 - 1707012 + G 83 -8.2 -4.57837 | gap 1, overlap 1706990 ATGGCGTCGCTGGGC TGCGT-CTGCA CGC TGCAGGACGCG TTTTTGAGCGGCTAT RPE_1522 1706404 - 1707177 + | methyltransferase type 11 TERM 1529 1710038 - 1710020 - g 70 -11.7 -3.36327 | overlap 1710023 1710032 CGACTTCATCGACAA CACCGCG ACCAA CGCGGTG CTGGCCAAGCTGAGC RPE_1523 1707639 - 1710302 + | flagellin TERM 1530 1710324 - 1710355 + T 100 -22.4 -3.27408 | opp_overlap 1710328, overlap 1710328 TTCTCAGCACCGAAG CGAAGACGGCGGGG GAAA CCCCGCCGTCTTTG TCTATTTGAGTGGCG TERM 1531 1710328 - 1710351 + T 100 -19.6 -4.28488 | opp_overlap 1710328, overlap 1710324 CAGCACCGAAGCGAA GACGGCGGGG GAAA CCCCGCCGTC TTTGTCTATTTGAGT TERM 1532 1710351 - 1710328 - T 95 -19.6 -3.19668 | opp_overlap 1710328 1710324 CAGCACCGAAGCGAA GACGGCGGGG GAAA CCCCGCCGTC TTTGTCTATTTGAGT RPE_1524 1712781 - 1710583 - | TPR repeat-containing protein TERM 1533 1712010 - 1712020 + g 79 -6.8 -4.63592 | overlap 1711990 1711994 TCACGGTCTGCATCG CGTC CTT GACG TTCTTTTTGTTCAGC TERM 1534 1713415 - 1713393 - g 74 -7.6 -4.21194 | CGCGACCACGCAAAA CCGGCTTGCC AGC GGCAAGAAGG TCAACTCGGCGTTGG TERM 1535 1713535 - 1713513 - g 73 -13.4 -3.21747 | CGACGGCATCAGCAA CGGCGTGCAG ATC CTGCAGGCCG CCAACACCGGCATTA TERM 1536 1714678 - 1714641 - g 75 -13.4 -3.37245 | CGACCTCAACATCAA CGGTCCGGCCGATCTG CTGAAC CAGCTCAGCCTGACCG CCTCGACCGGCCCCG TERM 1537 1715709 - 1715682 - g 73 -12.7 -3.36327 | overlap 1715697 1715699 CGACTTCATCGACAA CGCCGCCACCA ACAAGA CGATGGCGGCG CTCAACACCGCCTCG RPE_1525 1713307 - 1715964 + | flagellin flbT 1716190 - 1716567 + | flagellar biosynthesis repressor FlbT flaF 1716571 - 1716936 + | flagellar biosynthesis regulatory protein FlaF TERM 1538 1716990 - 1717002 + T 74 -9.1 -3.95584 | TTCGACGACGTTGCG GGTCG CCA CGACC TTTAATTGCTGCAGA RPE_1528 1717448 - 1717074 - | hypothetical protein RPE_1529 1718114 - 1717623 - | hypothetical protein RPE_1530 1718478 - 1718134 - | chemotactic signal-response protein CheL flgI 1719614 - 1718478 - | flagellar basal body P-ring protein fliX 1719924 - 1720334 + | flagellar assembly regulator FliX RPE_1533 1720501 - 1720911 + | TraR/DksA family transcriptional regulator TERM 1539 1720936 - 1720958 + F 100 -17.7 -5.08255 | CGAGTAGTTCCCTTT GCGCGGCGG TCTTT CCGCCGCGC TTTTGTTTTGGGGAT RPE_1534 1721746 - 1723446 + | methyl-accepting chemotaxis sensory transducer TERM 1540 1723571 - 1723540 - T 74 -13.7 -2.90054 | gap 1, opp_overlap 1723540, overlap 1723532 1723535 TATCAAACGATGACA CGTCG-TGCCCGCG CTTGT CGCGGGCATCGTCG TCTTGACAGCCGTGC TERM 1541 1723540 - 1723571 + T 75 -13.7 -3.02144 | gap 1, opp_overlap 1723532 1723540 1723535 TATCAAACGATGACA CGTCG-TGCCCGCG CTTGT CGCGGGCATCGTCG TCTTGACAGCCGTGC TERM 1542 1723690 - 1723649 - T 100 -17.4 -3.89524 | gap 1, overlap 1723652 ATGGTACCGCAGAAA CGACCGCGGCCTTCGCCAG GGGAG CTGACGAAGGCCGCG-TAG AACACTGCGTTGCGC TERM 1543 1723688 - 1723652 - T 93 -20.2 -3.01918 | overlap 1723649 GTACCGCAGAAACGA CCGCGGCCTTCGCCAG GGGAG CTGACGAAGGCCGCGT AGAACACTGCGTTGC TERM 1544 1723724 - 1723693 - T 72 -11.6 -3.29461 | opp_overlap 1723696 GAAGGCCGCGTAGAA CACTGCGTTGCG CCTAGGTT CGCAACGCGGTG TGGGAGCTGAGTATA flgH 1724502 - 1723744 - | flagellar basal body L-ring protein flgA 1725566 - 1724508 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 1545 1725176 - 1725199 + g 72 -14.6 -2.67513 | opp_overlap 1725154, overlap 1725175 CATCGGCGCGCCCGT TGTTGCGCGC CAGC GCGCGCAGCA CTTCGTTCTCGATCT flgG 1726362 - 1725574 - | flagellar basal body rod protein FlgG flgF 1727148 - 1726384 - | flagellar basal body rod protein FlgF fliL 1727502 - 1727996 + | flagellar basal body-associated protein FliL TERM 1546 1729036 - 1729089 + G 70 -12.9 -3.01712 | overlap 1729039 AGGTCGGCGACACGC TGCCGCTGGAGATGCGCCCCGACGC GCTG GTGTCGGTGCGCTGCGGCAGCGTCA TCTTGACCGAGGGCC fliM 1728015 - 1729226 + | flagellar motor switch protein FliM RPE_1541 1729223 - 1729657 + | hypothetical protein RPE_1542 1729654 - 1730403 + | hypothetical protein TERM 1547 1731956 - 1731921 - g 73 -13.8 -3.17075 | overlap 1731898 CTGCGCCGAAGGCAA CGCCGGCTCCCGCGGC GACA GCGGCCGAGGCCGGCG CAGCGGTCGATATCC RPE_1543 1730513 - 1734385 + | hypothetical protein TERM 1548 1734635 - 1734614 - g 83 -2.9 -5.24129 | overlap 1734617 1734618 GCGGTCGACAAAAAA CAACCGGAG CGCG CTCCGATCC AGAGAGGACGCTGTC TERM 1549 1734632 - 1734617 - g 84 -6.8 -4.72201 | overlap 1734614 1734618 GTCGACAAAAAACAA CCGGAG CGCG CTCCGA TCCAGAGAGGACGCT TERM 1550 1734929 - 1734882 - g 74 -15.4 -2.57931 | gap 1, opp_overlap 1734892 1734892, overlap 1734881 GCCATCGCCGACAAG CGCGGCCCAC-GCGCCACGCTGC TGA GCGGCGCGCTGCTGTTGGCCGCG GGTCTGGCGCTGACG RPE_1544 1734585 - 1735865 + | major facilitator transporter TERM 1551 1735933 - 1735962 + T 76 -13.6 -3.14344 | opp_overlap 1735938 CGACGCCGGCGGCAA CCGAAGTCTGGC GGGATG GCCAGACTCCGG TTCATCGCCGGACTA RPE_1545 1737678 - 1735975 - | methyl-accepting chemotaxis sensory transducer TERM 1552 1736406 - 1736381 - G 74 -12.5 -3.58343 | gap 1, opp_overlap 1736380 1736387 1736391, overlap 1736382 GCCACCACGGCGAAA CCGCGC-CCGGC CTC GCCGGCGCGCGC GGCTTCGATGGTGGC TERM 1553 1736405 - 1736382 - G 75 -16 -2.74792 | gap 1, opp_overlap 1736380 1736387 1736391, overlap 1736381 CCACCACGGCGAAAC CGCGC-CCGGC CTC GCCGGCGCGCG CGGCTTCGATGGTGG TERM 1554 1737345 - 1737364 + g 75 -13.6 -3.39803 | CGAGTTTTTCGGTGA CCGGATGC ATCA GCATCCGG TTCTGCATATCGGTG RPE_1546 1739312 - 1738050 - | hypothetical protein TERM 1555 1739032 - 1739015 - G 77 -4.1 -4.83169 | overlap 1738979 AGCGCGCCAGAAAAA TCGCCTC GGCG GAAACGA TCCAACGCGGTGGAG RPE_1547 1739776 - 1742874 + | PAS/PAC sensor hybrid histidine kinase RPE_1548 1743620 - 1743033 - | hypothetical protein TERM 1556 1743684 - 1743666 - R 76 -8.8 -4.20042 | ATCAATATGTGAAAA GGCGAGTA CGC TCCTCGCC CGGACAATTGATCAA fliP 1744689 - 1743925 - | flagellar biosynthesis protein FliP RPE_1550 1745801 - 1744686 - | hypothetical protein flgB 1746212 - 1746622 + | flagellar basal body rod protein FlgB flgC 1746649 - 1747074 + | flagellar basal body rod protein FlgC fliE 1747088 - 1747417 + | flagellar hook-basal body protein FliE TERM 1557 1747449 - 1747502 + F 75 -13.9 -3.09635 | gap 1, opp_overlap 1747452 1747457 1747461, overlap 1747453 1747457 1747461 TTCGTCATTGCGAGC GAAGCGAAGCAATCCAGG-GCTCCGC AAC GTGTGGCTCCTGGATTGCTTCGTCCC TTCGCTCCTCGCAAT TERM 1558 1747453 - 1747498 + F 90 -19.9 -2.55544 | gap 1, opp_overlap 1747452 1747457 1747461, overlap 1747449 1747457 1747461 TCATTGCGAGCGAAG CGAAGCAATCCAGG-GCTCCGC AAC GTGTGGCTCCTGGATTGCTTCG TCCCTTCGCTCCTCG TERM 1559 1747457 - 1747494 + F 76 -13.5 -3.22388 | gap 1, opp_overlap 1747457 1747452 1747461, overlap 1747453 1747449 1747461 TGCGAGCGAAGCGAA GCAATCCAGG-GCTCCGC AAC GTGTGGCTCCTGGATTGC TTCGTCCCTTCGCTC fliQ 1747551 - 1747814 + | flagellar biosynthesis protein FliQ TERM 1560 1747824 - 1747862 + F 71 -10.9 -3.53012 | gap 1, overlap 1747826 GGCTGACGCATGATC GGAT-CGGCCTGCACCGG AGCC CCGGAGCCGGCCGGATGC TTTCCCCCCAAGCGA TERM 1561 1748462 - 1748472 + G 82 -4.6 -4.87626 | AGATCGGCATGCAGC TGGC CGC GCCG TTTTTGGTGTTCGGC fliR 1747903 - 1748673 + | flagellar biosynthesis protein FliR TERM 1562 1748799 - 1748826 + G 81 -11.2 -4.11692 | overlap 1748798 CACCTGGTTCGTGAT CGCCGGCGGCAC GCTG GTGCTGTCGTCG TTTTCCGGCTCGATC flhB 1748683 - 1749753 + | flagellar biosynthesis protein FlhB RPE_1557 1749868 - 1752492 + | multi-sensor hybrid histidine kinase RPE_1558 1752574 - 1753368 + | hypothetical protein RPE_1559 1753365 - 1753748 + | hypothetical protein TERM 1563 1754152 - 1754166 + G 77 -12.8 -3.67597 | CCCGCGGCCGGCGCC GCCGCC AAG GGCGGC TTCTTCAATCGGCCC TERM 1564 1754193 - 1754214 + G 73 -13.7 -3.14132 | gap 1 GCCCGGCATGGGCAT GCTCGGCGGC CTC GCCGCCG-GC TTCCTCGGCGCCGGC RPE_1560 1753894 - 1754883 + | import inner membrane translocase, subunit Tim44 TERM 1565 1754943 - 1754913 - f 76 -8 -4.3351 | opp_overlap 1754916 1754928, overlap 1754904 1754914 1754915 ATAAAAGCCAAGAAA TCGGGCGCCGCGGC TTT GTCGCGGCGCCTTT TTTGTGCCGCTGGCA TERM 1566 1754941 - 1754915 - f 74 -15 -2.50003 | opp_overlap 1754916 1754928, overlap 1754914 1754913 1754904 AAAAGCCAAGAAATC GGGCGCCGCGGC TTT GTCGCGGCGCCT TTTTTGTGCCGCTGG TERM 1567 1754916 - 1754940 + F 100 -20.7 -5.252 | opp_overlap 1754915 1754914 1754913 1754904, overlap 1754928 AAAGCCAAGAAATCG GGCGCCGCGGC TTT GTCGCGGCGCC TTTTTTGTGCCGCTG TERM 1568 1755124 - 1755154 + G 75 -11.8 -3.71848 | gap 1 TGCGCTGATCGGCCC GCCGGCGCGCGCC CAGACC GCCG-GCGCCGGC TTCTTCGTCACCAGC RPE_1561 1755047 - 1755748 + | hypothetical protein TERM 1569 1755855 - 1755808 - f 76 -15.1 -2.53876 | gap 2, opp_overlap 1755813, overlap 1755813 1755838 1755842 CGCGAGCGTAAGCGA GCGAACCCGGAATCCCGAGATTG TCAG CAAG--CGAGATTCCGGGTTCGC CCGCCGCTTGCGCGG TERM 1570 1756135 - 1756118 - g 76 -6.3 -4.46212 | gap 1, overlap 1756132 GCGGCGATGACAAAA CTGC-TGC AGA GCAAGCAG ACCCCGCCGTTCGCG RPE_1562 1755983 - 1756690 + | glutathione S-transferase RPE_1563 1757552 - 1756878 - | isoprenylcysteine carboxyl methyltransferase TERM 1571 1757302 - 1757289 - G 79 -4.5 -4.77036 | overlap 1757298 1757299 CCCCATCAGCAAAAA CCACA TCAA TGCGG CGAAGCCGAACGCCG TERM 1572 1757364 - 1757395 + g 71 -3 -4.58395 | gap 2 GTCCTGCACCGGCGG CCGCATCCGCTCGC GCAGCA GCGC-CGGAT-CGG TTTTTGCCAGATACA TERM 1573 1757642 - 1757627 - R 93 -8.2 -5.08824 | opp_overlap 1757627 TGTCGACGCAAAAAA CCCCGC GCAA GCAGGG TTCTTTGGCGACGTC RPE_1564 1757889 - 1757668 - | formin TERM 1574 1758026 - 1758036 + r 76 -6.8 -4.4009 | opp_overlap 1758026 CGGGGTCGTTCAAAA CTGC GAA GCAG TTTTCTCAAATGCGA RPE_1565 1758595 - 1758131 - | hypothetical protein TERM 1575 1758387 - 1758412 + g 70 -8.9 -3.90744 | overlap 1758388 AGCTCGTTGCTGATG GTGCGGCTGGG GCAG CCGAGCCGCAA TTGTTTGGCCGCCGG TERM 1576 1758781 - 1758754 - R 78 -6.9 -4.64766 | gap 1, overlap 1758755 GGGAGAGGTGAAAAA CCGCAGCGCCGG TCATT CCG-CGCCGCGC GCCGCTCTCACCTCT RPE_1566 1760334 - 1759303 - | transposase IS116/IS110/IS902 family protein TERM 1577 1761110 - 1761089 - H 93 -13.7 -4.18762 | gap 1 AACGTTCACCCAAAA CCCG-GGCGC GTA GCGCCGCGGG AACGGGAAACTGCGC RPE_1568 1761505 - 1761735 + | hypothetical protein RPE_1569 1761937 - 1762158 + | hypothetical protein RPE_1570 1762167 - 1762463 + | plasmid stabilization system protein TERM 1578 1763893 - 1763852 - g 75 -11.5 -3.66018 | gap 1, overlap 1763884 GGATTACTTCAAGAA CCATCCGGTGTACTACGCCG GCC CGGCGAAA-ACGCCGGAAGG CTACGCCTCCGGCGC TERM 1579 1763907 - 1763884 - g 89 -14.6 -4.07568 | gap 1, overlap 1763852 CCGGCCCGGCGAAAA CGCCGGAAGGC TAC GCCT-CCGGCG CGTTCGGCCCGACCA RPE_1571 1762575 - 1764230 + | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit TERM 1580 1764346 - 1764307 - f 78 -14.2 -3.09749 | gap 1, opp_overlap 1764310 TAGTGCGAAGAGAGA TTCCGGGTTCGCCCGTCGC TTC GCGCCGTGCGC-CCCGGAA TGACGAAGAAGACGG TERM 1581 1764403 - 1764418 + G 78 -10.4 -4.07885 | ACCGCACCATGATCG CCGTCG GCCT CGACGG TTTTCGCCACGGCTG TERM 1582 1765051 - 1765017 - g 79 -12 -3.85698 | opp_overlap 1765017 CGCTCCTCCGACAAA TGTGTGCCCCGAGGCG AGC CGCCTCGGGACGATCA TGGTCTGCCGATGCA RPE_1572 1764396 - 1765079 + | hypothetical protein RPE_1573 1765477 - 1765181 - | hypothetical protein RPE_1574 1765760 - 1766479 + | hypothetical protein RPE_1575 1767023 - 1766442 - | hypothetical protein RPE_1576 1768545 - 1767142 - | carotenoid oxygenase RPE_1577 1768666 - 1769373 + | TetR family transcriptional regulator RPE_1578 1769561 - 1770214 + | nuclear protein SET RPE_1579 1770609 - 1770211 - | hypothetical protein TERM 1583 1770322 - 1770301 - G 71 -12.3 -3.23216 | gap 1 CTGCATCAGCACGAA GCCGATGCCG AGC CGGC-TCGGC GCGACCGCCTCGCTG RPE_1580 1770720 - 1771553 + | XRE family transcriptional regulator RPE_1581 1771633 - 1772307 + | DSBA oxidoreductase TERM 1584 1772341 - 1772361 + T 70 -10.4 -3.60296 | gap 1 TCAGCGTCTGAGCAG GCGCAGCGC CAGG GCGC-GCGC TTTGGCGTGGCCATG RPE_1582 1773396 - 1772326 - | hypothetical protein TERM 1585 1773405 - 1773462 + H 70 -12.6 -2.88249 | gap 3 CGAGCACCGCCAAGG CCGCC-GCGCCGCGC-GGTGCGGCGATCG CGG CG-TCGTGGCTCCGGCGCTGCGCCGGCGA TGTGTGCAGGGTCTC RPE_1583 1773695 - 1775134 + | peptidase C14, caspase catalytic subunit p20 RPE_1584 1775439 - 1775771 + | hypothetical protein TERM 1586 1775816 - 1775795 - T 74 -12.9 -3.33696 | overlap 1775796 TTGCCGGTGAAGCAA GCGGCCGCG CTGG CGCGGCCGA CGAGCGCGATCAGGT TERM 1587 1775815 - 1775796 - T 80 -16.4 -2.60075 | overlap 1775795 TGCCGGTGAAGCAAG CGGCCGCG CTGG CGCGGCCG ACGAGCGCGATCAGG RPE_1585 1776032 - 1775826 - | hypothetical protein RPE_1586 1776389 - 1776213 - | hypothetical protein TERM 1588 1776592 - 1776563 - R 93 -14.9 -4.07568 | opp_overlap 1776564 1776581, overlap 1776565 CGCGGGGGCCCAAAA TACCGAGGCCGCC TCGC GGCGGCCCCGGCT TGGTGGACTGAGCTG TERM 1589 1776564 - 1776591 + r 76 -14 -3.16683 | opp_overlap 1776563 1776565, overlap 1776581 GCGGGGGCCCAAAAT ACCGAGGCCGCC TCGC GGCGGCCCCGGC TTGGTGGACTGAGCT TERM 1590 1776590 - 1776565 - R 100 -19.7 -3.63744 | opp_overlap 1776564 1776581, overlap 1776563 CGGGGGCCCAAAATA CCGAGGCCGCC TCGC GGCGGCCCCGG CTTGGTGGACTGAGC RPE_1587 1776965 - 1776615 - | hypothetical protein TERM 1591 1777131 - 1777097 - R 91 -9.3 -4.56597 | gap 2, overlap 1777081 1777100 1777101 1777102 CGCGCGCTGCAAAAA TAAGCGGCGGCCGCCGC GGG GCG-CGGCAGCCG-TCA TCGCGCTCGGCCGTG TERM 1592 1777132 - 1777100 - R 100 -14.7 -4.40561 | overlap 1777081 1777097 1777101 1777102 GCGCTGCAAAAATAA GCGGCGGCCGCCGCG GGG CGCGGCAGCCGTCAT CGCGCTCGGCCGTGG TERM 1593 1777131 - 1777101 - R 91 -18.2 -3.23855 | overlap 1777081 1777097 1777100 1777102 CGCTGCAAAAATAAG CGGCGGCCGCCGCG GGG CGCGGCAGCCGTCA TCGCGCTCGGCCGTG TERM 1594 1777130 - 1777102 - R 90 -19.5 -2.53831 | overlap 1777081 1777097 1777101 1777100 GCTGCAAAAATAAGC GGCGGCCGCCGCG GGG CGCGGCAGCCGTC ATCGCGCTCGGCCGT RPE_1588 1777434 - 1777168 - | hypothetical protein RPE_1589 1777596 - 1777784 + | hypothetical protein RPE_1590 1777896 - 1778078 + | hypothetical protein TERM 1595 1778427 - 1778448 + T 93 -13.7 -4.18762 | gap 1, opp_overlap 1778411 1778409 1778440 1778441 GCGCACTTGCCCGTT CCCGCGGCGC AAA GCGCC-CGGG TTTTGGCTGAACGTT TERM 1596 1778523 - 1778480 - T 70 -7.2 -4.07568 | gap 1, opp_overlap 1778492 1778520, overlap 1778441 1778440 CGCCCTCTTCCAAAA CGAGGGCGTGCGGAACGCCGG GTG CCGATGCACC-CGCGGCCTCG TGTGCAATGGGTAGA TERM 1597 1778699 - 1778738 + T 72 -4.1 -4.62069 | overlap 1778701 TTGAAGCCGGCTCTC CGGAGGGGCTTGATGCC ACGCGC GGCATCGAGACCACACG TTTTTGCCGTCCGCG TERM 1598 1778974 - 1779014 + T 93 -21.2 -3.01119 | gap 1 AATTCTGCGTCGTCA TTCCGGG-GCGTCCGCCGC GCCA GCGGCGGGCGAACCCGGAA TCTCTCTCGGTCGCT RPE_1591 1779489 - 1779130 - | hypothetical protein RPE_1592 1779874 - 1779635 - | type IV pilus assembly PilZ TERM 1599 1779979 - 1779954 - H 76 -6 -4.62783 | opp_overlap 1779957 1779975, overlap 1779955 1779957 GACCGACCGGAAAAA TCAGGCCGCC AACCGA GGCGGCCTTT GGTCTCAAGGGTGTG TERM 1600 1779976 - 1779957 - H 70 -12.1 -3.25166 | opp_overlap 1779957 1779975, overlap 1779955 1779954 CGACCGGAAAAATCA GGCCGCC AACCGA GGCGGCC TTTGGTCTCAAGGGT TERM 1601 1779957 - 1779976 + H 81 -12.1 -3.83205 | opp_overlap 1779955 1779954 1779957, overlap 1779975 CGACCGGAAAAATCA GGCCGCC AACCGA GGCGGCC TTTGGTCTCAAGGGT TERM 1602 1780673 - 1780701 + H 75 -3.7 -4.68994 | overlap 1780674 GGTTGCTTGAGCCCG ATCAGTTTGGCCG CAG CGGCCTGAGTGAG TTTTTGACTCCTAAT RPE_1593 1780933 - 1782150 + | hypothetical protein TERM 1603 1782176 - 1782153 - f 95 -15.3 -4.00868 | CGATCCAGAATGAAA GAGGCCGCC AACTGA GGCGGCCTC CAGCAGTCTAGCCGT recA 1782617 - 1783705 + | recombinase A RPE_1595 1786899 - 1784014 - | glycine dehydrogenase TERM 1604 1784446 - 1784491 + g 82 -6 -4.82901 | overlap 1784414 1784472 GCTGGAATTCTTCAG CGCGCGCGGAT-CGACGATGCA TTCA TGCG-CGACGCGGCCGCGCTCG TTTTTGTACAGCACC TERM 1605 1784690 - 1784678 - G 72 -4.7 -4.56597 | opp_overlap 1784678 CCGCCGTGGGAAAAA CCGTC GGG GCCGG TGTCGTCGCAGCAGG TERM 1606 1784738 - 1784722 - G 72 -5 -4.56775 | overlap 1784723 ATGGCCGGGCAAAAA CGGCGC GAGAT GCGCCT TGACCCCGATCGGGC TERM 1607 1787035 - 1787076 + r 72 -11.6 -3.28712 | gap 2 TGGTGCGCTGCTGAT CCGGGGCCCCGGTAACTGAC AGCA GTC-GA-ATCGGGGTCCCGG TTCTGCGGAGCAGCA RPE_1596 1787541 - 1787176 - | glycine cleavage system protein H RPE_1597 1788702 - 1787551 - | glycine cleavage system aminomethyltransferase T TERM 1608 1787600 - 1787580 - G 93 -4.7 -5.38054 | gap 1 TGGGAGAAACAAAAA CGG-GCGA GCCGAT TCGCACCG GCAGACGCTGGCCGC TERM 1609 1787644 - 1787631 - G 71 -3.1 -4.58283 | overlap 1787632 GAACCTCGGCAAAAA CCATG TCTT CATGA CGGGCGTGTTGCGAC TERM 1610 1788363 - 1788334 - G 85 -7.9 -4.81083 | gap 1, overlap 1788336 GTTAACCACCAAAAA CAGATGGTCGCCGA AAT TCGAC-ACCATCAG ATCGTCCAGAATGCC TERM 1611 1788361 - 1788336 - G 73 -9.1 -4.02049 | gap 1, overlap 1788334 TAACCACCAAAAACA GATGGTCGCCGA AAT TCGAC-ACCATC AGATCGTCCAGAATG TERM 1612 1789109 - 1789089 - H 71 -12.5 -3.02371 | overlap 1789086 CCCGGGAAAGAACCA GGCTGCCGC GGC GCGGCAGGC ATCATGATGCGATTG TERM 1613 1790499 - 1790485 - g 70 -4.2 -4.56597 | overlap 1790486 GGCCTGCGCGAAAAA CTCGGC GCC ACCGAA TTCCTGGGCTACGAG alaS 1789126 - 1791807 + | alanyl-tRNA synthetase TERM 1614 1791863 - 1791816 - T 100 -20.6 -3.81146 | gap 1, opp_overlap 1791813, overlap 1791841 GGGGTGAAGTAACAA CGTCATTCCGGG-GCGCGCGAGC ACA GCTCGCGCGAACCCGGAATCCCG CAATTGGTGCGAAGA TERM 1615 1791923 - 1791883 - T 81 -15.4 -3.09273 | gap 1, overlap 1791841 TGGTGCGAAGAGAGA TTCCGGGTTCGCCCGCCGC TTGC GCAGCGTGCGC-CCCGGAA TGACGACATTGAATT TERM 1616 1792022 - 1792062 + T 93 -19.8 -2.87132 | gap 1, opp_overlap 1792018 1792017 TAACTAACAACGTCA TTCCGGG-GCGCGCGCAGC GCAA GCTGCGTGCGAGCCCGGAA TCTATCACCACCGCA RPE_1599 1794214 - 1792148 - | prolyl oligopeptidase TERM 1617 1792219 - 1792245 + g 70 -8.7 -3.90112 | gap 1 GCATGGAATTGTCCA CCG-CGCCGG AATGGCCG CCGGCGACGG TTTCGTTGAACCACA TERM 1618 1794324 - 1794334 + r 86 -6.8 -5.02074 | opp_overlap 1794276, overlap 1794314 1794314 CCGTCGGGCGGCCCT GCAG CAC CTGC TTTTTTCGCACGTCG RPE_1600 1796079 - 1794304 - | sodium/hydrogen exchanger TERM 1619 1796141 - 1796130 - H 74 -5.8 -4.43213 | GCGAACAGATCAAAA CAGC GTCG GCTG CGGCAATTAATCGCG TERM 1620 1797545 - 1797501 - g 70 -10.6 -3.55444 | gap 1, opp_overlap 1797505 CTGCCAGCGGCGAAA GCCACGGTGCCGGGCTCGCCG GCCG CGG-ACGCCCAGCACGGCAGC CATGTGGTGATGGTC RPE_1601 1796268 - 1797989 + | potassium efflux system protein TERM 1621 1798143 - 1798173 + T 71 -14.1 -2.63164 | opp_overlap 1798148, overlap 1798148 GAAGCGACAGCCAAC AAAAAGGCGCGGA GAGCA TCCGCGCCTTTTG CTTAGTTAGCTATCA TERM 1622 1798168 - 1798148 - T 100 -14 -5.12068 | opp_overlap 1798148 1798143 GACAGCCAACAAAAA GGCGCGGA GAGCA TCCGCGCC TTTTGCTTAGTTAGC TERM 1623 1798148 - 1798168 + T 100 -14 -4.4959 | opp_overlap 1798148, overlap 1798143 GACAGCCAACAAAAA GGCGCGGA GAGCA TCCGCGCC TTTTGCTTAGTTAGC RPE_1602 1799427 - 1798198 - | isocitrate dehydrogenase TERM 1624 1799729 - 1799706 - g 74 -10.2 -3.82218 | ACCGACAGCAGCAAA CAGGCCGCCG ATCT CAACGGCCCG GTGGTGATCCTGGTC RPE_1603 1799676 - 1800869 + | RNA methyltransferase TERM 1625 1800943 - 1800904 - f 93 -9.2 -4.77036 | TTCGAGTAGCAAAAA CCGCCCCGTTAGCGTATC CTGC GATAAGTGAACGGGGAGG CGTCATGCCGACACG RPE_1604 1800948 - 1801220 + | CopG/Arc/MetJ family transcriptional regulator TERM 1626 1801198 - 1801241 + F 75 -4.5 -4.77165 | overlap 1801200 CCGCGTTGGATGAAC TCGCCGCTACGC-CCCCGCGG TGAT CCGTGGCGCGC-TATCGGCCA TTTTGTTCTCAAAGC RPE_1605 1802435 - 1802917 + | transcription elongation factor regulatory protein TERM 1627 1803067 - 1803036 - T 82 -10.9 -4.09243 | gap 1, overlap 1803037 1803054 GACACGCCCCCAAAA CGCCAACGGCCGGG ACAAG CCCGGCCATTG-CA ACAATTCGGCTCGAT RPE_1606 1803457 - 1803134 - | hypothetical protein TERM 1628 1804202 - 1804238 + G 77 -8 -4.37092 | gap 1, opp_overlap 1804202 CCACGCCGCAGGAAA TCGACGACGTG-ATGGC GCTC GCCATCCGCGTCAACGA TTTTCTCACCGGGCT RPE_1607 1803730 - 1804527 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1629 1804537 - 1804560 + F 88 -17.4 -3.02144 | GGCTGAGGTCATTCC GGCGCGCGCC GTTC GGCGCGTGCC TGTTCACAAGCGTCA TERM 1630 1804678 - 1804638 - f 88 -17.6 -3.09273 | gap 1 GGTTGCGAAGAGAGA TTCCGGGTTCGCCCGCAGC GTTC GCTGCGCGCGC-CCCGGAA TGACGAGGGGACAAT RPE_1608 1804692 - 1804934 + | phosphoribosylformylglycinamidine synthase subunit PurS RPE_1609 1804955 - 1805209 + | hypothetical protein RPE_1610 1805206 - 1805907 + | phosphoribosylformylglycinamidine synthase I RPE_1611 1806043 - 1806246 + | hypothetical protein RPE_1612 1806946 - 1806458 - | thioesterase superfamily protein TERM 1631 1806554 - 1806524 - G 75 -9.7 -4.07885 | opp_overlap 1806532 GATCGTCCCGGAAAA CGTGAACAGCGGC CGCGC GCCGCTCTTCAGG ATGCCACGGACGAAG TERM 1632 1806655 - 1806644 - G 72 -4.4 -4.56597 | overlap 1806645 1806646 CGCCGCGTCCAAAAA TTCG GCGC CGAA CGCCACGGTGACGCC RPE_1613 1807138 - 1809351 + | phosphoribosylformylglycinamidine synthase II TERM 1633 1809358 - 1809414 + T 77 -12.8 -3.61398 | gap 1, opp_overlap 1809361 1809400, overlap 1809359 AAGAACTAACTCCAA GCACGTCATTCCGGG-GCGCGCGCCGC GCTA GCGGCGAGCGAACCCGGAATCCCGAGA TTGTTACAAAGAGAG TERM 1634 1809359 - 1809413 + T 81 -16.3 -2.76696 | gap 1, opp_overlap 1809361 1809400, overlap 1809358 AGAACTAACTCCAAG CACGTCATTCCGGG-GCGCGCGCCGC GCTA GCGGCGAGCGAACCCGGAATCCCGAG ATTGTTACAAAGAGA TERM 1635 1809411 - 1809361 - T 84 -17.5 -2.76225 | gap 1, opp_overlap 1809359 1809358, overlap 1809400 AACTAACTCCAAGCA CGTCATTCCGGG-GCGCGCGCCGC GCTA GCGGCGAGCGAACCCGGAATCCCG AGATTGTTACAAAGA TERM 1636 1809477 - 1809425 - T 86 -13.4 -3.88787 | gap 1, overlap 1809431 CGAGATTGTTACAAA GAGAGATTCCGGGTTCGCCCGCAGC TGAC GCTGCGATCGC-CCCGGAATGACTC GAAATGGAGTAAGTG TERM 1637 1809471 - 1809431 - T 76 -14 -3.23335 | gap 1, overlap 1809425 TGTTACAAAGAGAGA TTCCGGGTTCGCCCGCAGC TGAC GCTGCGATCGC-CCCGGAA TGACTCGAAATGGAG RPE_1614 1810960 - 1809761 - | acyltransferase 3 RPE_1615 1811412 - 1811047 - | hypothetical protein RPE_1616 1811581 - 1811817 + | morphology/transcription regulator BolA family protein RPE_1617 1811853 - 1813031 + | low temperature requirement A TERM 1638 1813114 - 1813073 - T 71 -13.9 -2.55544 | gap 1, opp_overlap 1813072 1813077 1813088, overlap 1813069 1813077 CGAGGAGCGAAGCGA CGAAGCAATCCATCGTCC CGGGCTC GG-CGCTGGATTGCTTCG CTTCGCTCGCAACGA RPE_1618 1814113 - 1813145 - | hypothetical protein TERM 1639 1813649 - 1813637 - G 71 -3.3 -4.57569 | overlap 1813638 1813639 CGACCCCGGGAAAAA CCCGA CCT TCGGC ATCGCCTGCAACGCC TERM 1640 1813862 - 1813900 + g 73 -13.9 -3.15427 | gap 2 GAACTCGATCAGCGC CGCGCCGCGCGGCATCAGC GCG GC-GATCTCGC-CGGCGCG TTCGTGCAGGATGTT RPE_1619 1815403 - 1814156 - | hypothetical protein TERM 1641 1815528 - 1815516 - H 74 -4.8 -4.59853 | overlap 1815517 CGAAGCCGGCAAAAA CTCC GCAGA GGAG CAGATTCGCTCGGAT RPE_1620 1815654 - 1815986 + | glutaredoxin-like protein TERM 1642 1815989 - 1816045 + F 95 -19.4 -3.53444 | gap 2 GGCGTCGGCCTGATG CTTGTGTCCCGGA-C-GCGCTGCGGCGC GGA GCGCTGCTGCGCAGATCCGGGACCCCGG TTTAGCGGCCCCTAC TERM 1643 1816293 - 1816335 + G 86 -17.7 -3.14564 | gap 1, overlap 1816279 CTCGCTGCTCGGCGG TGGCGGCGTCGACGGCGCGA TTCA TCGCGCCG-CGGGGCCGCAA TTGCTCGCCGCCTGC TERM 1644 1816492 - 1816539 + G 72 -11.9 -3.55071 | gap 1 CTGGCTTCCTGCTAT CGCC-GCGCGGTGGCGCTGTGC GGCGA GCACGGTCTCGCCTCGCTGGCG TTTGCGGCGATCTCC TERM 1645 1816626 - 1816653 + G 75 -6.8 -4.37527 | GATTGCCACGCTCGA CGCCGCGCCCGC GCTC GCCCGCGTGGTG TTTTGCTGCTTCTCG RPE_1621 1816168 - 1816728 + | appr-1-p processing domain-containing protein TERM 1646 1816900 - 1816913 + G 79 -3.1 -5.02074 | gap 1, opp_overlap 1816900 TCGCCGGCGAAGCTA TCG-CG GAT CGACGA TTTTTTGCGCGGTGA RPE_1622 1816774 - 1818042 + | beta-lactamase RPE_1623 1818218 - 1819048 + | hypothetical protein RPE_1624 1819462 - 1820511 + | fatty acid desaturase RPE_1625 1820937 - 1820557 - | glyoxalase/bleomycin resistance protein/dioxygenase RPE_1626 1821524 - 1821321 - | hypothetical protein RPE_1627 1821835 - 1822497 + | putative signal transduction histidine kinase RPE_1628 1822556 - 1822801 + | hypothetical protein RPE_1629 1823002 - 1823274 + | hypothetical protein RPE_1630 1824518 - 1823451 - | aromatic amino acid beta-eliminating lyase/threonine aldolase TERM 1647 1823754 - 1823801 + g 100 -22.1 -3.33696 | gap 1 ATCGAGCGCGTAGAG CGCCGCGGCGGCGCAGATGC CGGCTTGGC GCATC-GCGCCGCCGAGGCG TTGCTTCCAGCGCCA TERM 1648 1824589 - 1824569 - R 100 -19.7 -4.90266 | TGTAGGAACGAAAAA GGCCCCGGC AAA GCCGGGGCC TGAAAAACTTCGTCG rpsD 1825284 - 1824616 - | 30S ribosomal protein S4 TERM 1649 1825112 - 1825138 + g 70 -13.6 -3.02461 | GAAAGCTTGCCCTTG CGGCGCTGGCCG TGC TGGCCGGGGCCG TATTCGCGGCGGTTG TERM 1650 1825381 - 1825351 - R 89 -16 -3.53444 | opp_overlap 1825346, overlap 1825356 CCACGGGTCGCGAAA CGCAACGCGGGCCG AAA CGGCCCGCGAAGCA AGGGGGTTCTAGGCG TERM 1651 1825376 - 1825356 - R 95 -19.7 -3.27525 | opp_overlap 1825346, overlap 1825351 GGTCGCGAAACGCAA CGCGGGCCG AAA CGGCCCGCG AAGCAAGGGGGTTCT RPE_1632 1826285 - 1825671 - | GCN5-related N-acetyltransferase RPE_1633 1827475 - 1826684 - | hypothetical protein TERM 1652 1827247 - 1827234 - G 71 -3.1 -4.58395 | gap 1, opp_overlap 1827234 GGCAGTTCGTAAAAA TGCGCC CAC GGC-CA TTTCATATAGAGCGT TERM 1653 1827357 - 1827313 - G 85 -14.2 -4.07687 | gap 2, overlap 1827300 1827314 ACGCCTTGGCGAAAA TCGCCGCCCA-GCCAG-GCCGC ATC GCGGCGCCGGCGCGCGCGGCGG CGACCGCGCTCAAGT TERM 1654 1827356 - 1827314 - G 86 -17.7 -3.04398 | gap 2, overlap 1827300 1827313 CGCCTTGGCGAAAAT CGCCGCCCA-GCCAG-GCCGC ATC GCGGCGCCGGCGCGCGCGGCG GCGACCGCGCTCAAG RPE_1634 1827893 - 1827513 - | cupin 2 domain-containing protein RPE_1635 1828755 - 1827919 - | glutamate racemase TERM 1655 1828881 - 1828843 - H 78 -14.7 -3.02324 | gap 2, opp_overlap 1828842 1828841, overlap 1828824 1828838 1828852 1828853 GCGAGCGAAATCACA CGG-CGCAAAGGC-GCGAT CGA ATCGCAGCCGTTGCGGCCG AATTCTAACGCGAGG RPE_1636 1828905 - 1829456 + | cytochrome B561 RPE_1637 1830076 - 1829453 - | MOSC domain-containing protein RPE_1638 1830618 - 1830091 - | hypothetical protein RPE_1639 1830923 - 1830603 - | hypothetical protein RPE_1640 1832462 - 1831155 - | adenylosuccinate lyase TERM 1656 1831584 - 1831626 + g 70 -6 -4.18018 | opp_overlap 1831568 GACGTTTTCCAGCGC CGGCATCGCATAGGCGCGCA CCA TGCGCGCCAGGCCGGTGAGG TTTTCGGTCAACACC TERM 1657 1831657 - 1831673 + g 75 -4.4 -4.66833 | gap 1 GGATTGCGCTTGTGC GGCATCG AGGA CGA-GCC TTTTTGCCCTTCGGA TERM 1658 1831950 - 1831896 - G 100 -19.4 -3.5944 | opp_overlap 1831933 ATCGATATGCGCAAA GGTGCCGACCGAGC-CGGAGATCGCG CAGGT CGCGATCTCCGCGCGCG-CCGCCACC ATGCGCTCGCGGGCG TERM 1659 1833124 - 1833104 - H 86 -8.2 -4.58395 | CCGATCGCCCAAAAA TCGCCGCG GTGGG CGCGCCGA CGAAGGCGTCGCGCG TERM 1660 1833196 - 1833223 + H 73 -11.2 -3.53811 | overlap 1833190 GCGCCTTCCGGCGCG CCCCGCCCCTCA TGTG TGAGGGGAGGAG TTTCGCACAGCTCGG TERM 1661 1833659 - 1833619 - H 71 -13.2 -3.09273 | gap 1 TGTCGCCAAGAGAGA TTCCGGGTTCGCCCGCCGC TAGG GCGGCGTTCGC-CCCGGAA TGACTCGCGGAGGGG RPE_1641 1833862 - 1834431 + | hypothetical protein TERM 1662 1835053 - 1835065 + T 70 -10.5 -3.53811 | opp_overlap 1835042 1835037, overlap 1835037 TGAACGCGTGGGCAC GGCGC TAC GCGCC TTTGCCCACCCTACG TERM 1663 1835890 - 1835846 - T 100 -6.5 -5.59564 | gap 1 ACAAATCCAAAAAAA TAGCGCATCGGATGTCCCTC TACTAG GATGG-CAGCCAATGCACTA ATTCGAATCAAACAA RPE_1642 1836634 - 1835939 - | ribulose-phosphate 3-epimerase TERM 1664 1836059 - 1836106 + g 73 -14 -3.1355 | gap 1, opp_overlap 1836047 1836028, overlap 1836053 AAACGCATTGGCGCC GGCGGCGGCGAGCGCGCCGGACA CCT TGTCGGACACGC-CGCCGTCGAC TTCGATGTCGATCGG TERM 1665 1836723 - 1836740 + H 91 -9.1 -4.56597 | opp_overlap 1836723 1836724, overlap 1836724 CTTGCCCCGGCACAA TCTGCCG TTGG CGGCAGG TTTTTCCACCACGGC RPE_1643 1836871 - 1837449 + | signal transduction protein TERM 1666 1837439 - 1837458 + T 72 -13.6 -2.70932 | CCTCGACGCTGTCGC TCAGCGCC TGAA GGCGCTGA TCATTCGCGGGCGGC TERM 1667 1837654 - 1837616 - T 73 -13.2 -3.21099 | overlap 1837645 CGCTGGTATCAGGAA CGCGGCGCCATCAGTT GCCGCCG AACCGATCGCGCCACG CCGGCAGCGCGCCCG RPE_1644 1838627 - 1837626 - | peptidase S58, DmpA RPE_1645 1838741 - 1839475 + | cytochrome c biogenesis protein, transmembrane region TERM 1668 1839543 - 1839516 - f 76 -7 -4.42464 | gap 1, overlap 1839517 1839520 AACCCCTTAAACAAA GTCATTGCCGGGC TTG ACCCGGCAATC-C ATCCCATGAAGAATT RPE_1646 1839593 - 1839880 + | excinuclease ABC subunit C TERM 1669 1839908 - 1839888 - T 71 -14 -2.59431 | overlap 1839884 TTTGTTGATAATGGA TGCGCGGG TCAAG CCCGCGCA TGACGCTGAACGGGT RPE_1647 1841262 - 1840141 - | extracellular ligand-binding receptor TERM 1670 1841295 - 1841322 + r 83 -15 -3.45033 | gap 1, opp_overlap 1841292 1841291 TCATGGACGAACGCG TTTCGT-CCCGGC AGC GCCGGGCACGAAA TTCTGCTGCATTCTC RPE_1648 1842319 - 1841564 - | ABC transporter related TERM 1671 1841717 - 1841737 + g 74 -7.5 -4.16842 | GTTCTGCTCCACGAT CAGCACGGT GAG GCCGTCCTG TTTGTTCAGCGTGCG TERM 1672 1842189 - 1842148 - G 72 -4.9 -4.56597 | GCGGCTTGCCAAAAA TCGTCATCATCAGCGTCGA CTTG CCGGCGCCGTTGGCGCCGA TCAGCGCCACGATCT TERM 1673 1842396 - 1842429 + r 71 -12.5 -3.05498 | gap 1 CGGCCTGGCTTGTGG TCGTGGATGGCCGGGT CAA GCCCGGCCATG-ACGA TGTATATGTGGGGTA RPE_1649 1843286 - 1842447 - | ABC transporter related RPE_1650 1844617 - 1843283 - | inner-membrane translocator TERM 1674 1844532 - 1844512 - G 100 -10.4 -5.10933 | opp_overlap 1844526, overlap 1844513 TCAGCGAAAACAAAA CCAGCGCC ACCAG GGCGCTGA TCAGGGCTTTCTTGA TERM 1675 1844531 - 1844513 - G 75 -11.7 -3.65475 | opp_overlap 1844526, overlap 1844512 CAGCGAAAACAAAAC CAGCGCC ACCAG GGCGCTG ATCAGGGCTTTCTTG RPE_1651 1845543 - 1844626 - | inner-membrane translocator TERM 1676 1845777 - 1845810 + H 83 -7.3 -4.57569 | gap 1, opp_overlap 1845802, overlap 1845778 TGTCGGGATGCGGGA ACTGC-CCGGCTTCGG CAA CCGAAACCGGCGCCGG TTTTTCCCGCACTGC RPE_1652 1846212 - 1846766 + | hypothetical protein RPE_1653 1847856 - 1847074 - | 3-oxoadipate enol-lactonase TERM 1677 1848264 - 1848246 - g 70 -5.9 -4.20696 | opp_overlap 1848246, overlap 1848248 CGAGGAACTGGAAAA GACCGAG GACGA CTCGGGC TTTCGCGCGGTCGCC RPE_1654 1848127 - 1848582 + | carbon monoxide dehydrogenase subunit G TERM 1678 1848701 - 1848662 - f 74 -12.8 -3.28712 | gap 1, opp_overlap 1848672 TGCCGCTCCGCAGAA CCGGGACCGTCGCG-AGCG GCG CGTTTCGTAACGGCCCCGG ATCTGCAGCGCACCA TERM 1679 1848807 - 1848845 + F 82 -14.5 -3.36289 | gap 1 ATCACGCGATTACCA CCGGGGCGATGAGCGGCG CGGT TGCCGCGCG-CGCTCCGG TTCCTTACGATGCTC TERM 1680 1849005 - 1849016 + G 74 -5.8 -4.56775 | GTCGACCCCCGAACC CTGC TGGT GCAG TTTTTGCGCGACAAT RPE_1655 1848942 - 1849427 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein RPE_1656 1849477 - 1850319 + | molybdopterin dehydrogenase, FAD-binding protein RPE_1657 1850330 - 1851238 + | ATPase RPE_1658 1852029 - 1853228 + | VWA domain CoxE-like family protein RPE_1659 1853265 - 1853597 + | hypothetical protein TERM 1681 1854059 - 1854084 + G 70 -2.3 -4.65895 | overlap 1854055 1854061 ATCGACGATCCGGCG CTGCTGCACGC CTTT GCGCGCGACTG TTTTTACATCGGCGC TERM 1682 1854131 - 1854117 - g 95 -4.9 -5.40072 | TCGGCTCGAAAAAAA CCCAC GCCAG GCGGG TCGAGCGGCTGAAGG RPE_1660 1853600 - 1854301 + | xanthine dehydrogenase accessory factor TERM 1683 1854489 - 1854466 - g 86 -16.8 -3.2794 | overlap 1854483 GTGCAGCTAGAGGAA GGCGACGTCT CCGA AGACGTCGCC GCCGGCAGCATCGCG TERM 1684 1855710 - 1855743 + G 79 -10.9 -3.9122 | gap 1, opp_overlap 1855708 GCCGTCGAGCGAAGG CCGCCGCGGCAATCCG GTG CTG-TGGTCGCGGCGG TTCTTTCCCGAACTG RPE_1661 1854298 - 1855902 + | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase RPE_1662 1856769 - 1855897 - | FkbM family methyltransferase TERM 1685 1856922 - 1856946 + G 70 -8.4 -3.89956 | GTGGGGCTGATCGGA CGCACGCGCC ATCGC GGCGCGGGAG TTTGCTATCTACTGG TERM 1686 1857088 - 1857030 - g 78 -13.8 -3.53012 | gap 1, overlap 1857031 1857070 CTGGCGTTCGGCAAA TGCGGCAGCTATGGCCAGGCCTACGAC CACTCC GCCGAAAGCGCGGCCATTGCCGCCGC- GCGCAAGCAGTGCAA TERM 1687 1857088 - 1857031 - g 93 -19.8 -2.71712 | overlap 1857030 1857070 TGGCGTTCGGCAAAT GCGGCAGCTATGGCCAGGCCTACGAC CACTCC GCCGAAAGCGCGGCCATTGCCGCCGC GCGCAAGCAGTGCAA TERM 1688 1857090 - 1857070 - g 70 -11.1 -3.5393 | overlap 1857030 1857031 ACCACTCCGCCGAAA GCGCGGC CATTGCC GCCGCGC GCAAGCAGTGCAAGG TERM 1689 1857185 - 1857167 - g 75 -4.4 -4.62783 | overlap 1857168 GATCGATCTGAAAAA TCCCTGCG GCG CGCACGGC TATGCGGTCAAGGCG RPE_1663 1856907 - 1857299 + | hypothetical protein RPE_1664 1857513 - 1857334 - | hypothetical protein TERM 1690 1857677 - 1857660 - H 73 -8.5 -4.07885 | GACCCCTCTTGAAAA TGACTGA CTGG TCAGTCA TAATGAAGAAATGAA RPE_1665 1857688 - 1858464 + | TetR family transcriptional regulator RPE_1666 1858461 - 1859252 + | putative efflux protein RPE_1667 1859249 - 1860184 + | ABC transporter related TERM 1691 1860942 - 1860966 + G 74 -7.9 -4.19624 | overlap 1860940 CGGCTTCATCCAGGC CACGCTGAT CATCGGC ATCGGCGTG TTTCTGTTCGGCGTG RPE_1668 1860181 - 1861347 + | ABC-2 type transporter TERM 1692 1861976 - 1861958 - g 70 -10.2 -3.64703 | CCCGCGCCAGCGAAA TCGCCGTG TGG CTCGGCGA TCGCGGCGAGACGAC RPE_1669 1861591 - 1862208 + | hypothetical protein RPE_1670 1863043 - 1862306 - | hypothetical protein TERM 1693 1862570 - 1862531 - G 74 -12.8 -3.53343 | gap 1 AAGCCGGCCGCCAAA GCCGGTGCCGAGCGTGGTC GCC GACCACGA-CGACGCCAGC ATCAGCGCGGGCATC TERM 1694 1863118 - 1863136 + r 79 -8.1 -4.34402 | gap 1, overlap 1863102 GGTGTCCAGCGCGGC GCCGCCGC TCAG GCG-CGGC TTTTGATCTCGACCG RPE_1671 1863368 - 1863126 - | hypothetical protein RPE_1672 1863932 - 1863471 - | hypothetical protein RPE_1673 1864771 - 1863968 - | hypothetical protein TERM 1695 1864719 - 1864703 - G 77 -7.9 -4.36914 | overlap 1864706 CTTCTCGGGATAAAA CACCCCG CGC CAGGGCG GAAAAGTCCAGCCGC TERM 1696 1865497 - 1865471 - g 71 -12.3 -3.29144 | gap 1, overlap 1865474 CGATTCCTTCGACAA GC-AGCGCGCCG GCGC CAGCGCGCTCGC CACCACCATCGCGCG RPE_1674 1865025 - 1866158 + | dolichyl-phosphate beta-D-mannosyltransferase RPE_1675 1866155 - 1867645 + | glycosyl transferase family protein TERM 1697 1868714 - 1868668 - g 100 -20.8 -3.30159 | GGAATCGGTGCAGAA CGCCACCGACCAGGCACGCTGC GTC GCCGCGCGGCTGACCGGTGACG CGAAGATCTACGACG RPE_1676 1867781 - 1868998 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1698 1869165 - 1869110 - T 100 -19.1 -3.57263 | gap 3, opp_overlap 1869111 1869147 AGGTCTACGGTCAAA GCGGGATCCCGGCTCTGCGGAGCAGCGC TAC GCGCTGCTCCGC-GT-CCGGGA-CACAC AGTCTCGTACCGCAG RPE_1677 1870094 - 1869189 - | ribokinase-like domain-containing protein TERM 1699 1870260 - 1870247 - H 74 -9.5 -3.85698 | GGTCGGTGTCATAAA CCGCG CGGG CGCGG CGCAAAGGAATGCGA TERM 1700 1870640 - 1870679 + G 100 -12 -4.47707 | gap 1, overlap 1870643 GACGCTGTCCTGGCG CCGCACCCGCGCCGCTACG GCG CAGGCCGGCG-GGGTGCGG TTGTTTTTCATCGAA TERM 1701 1870643 - 1870682 + G 100 -11.2 -4.72986 | overlap 1870640 GCTGTCCTGGCGCCG CACCCGCGCCGCTACGGC GCAG GCCGGCGGGGTGCGGTTG TTTTTCATCGAACTG RPE_1678 1870278 - 1871147 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1702 1871394 - 1871378 - g 70 -10.1 -3.72893 | CATTTCCCGACCAAA TCGGCGC TCT ACGCCGA GATCCTGACGGAGGA RPE_1679 1871216 - 1871917 + | TetR family transcriptional regulator TERM 1703 1872521 - 1872486 - g 78 -6 -4.58395 | gap 1, opp_overlap 1872506, overlap 1872488 CTGATCTCGCAAAAA CTCGTCAAG-GCGCCGT TCG ACGGCGTGCTCGGCGTG CGCCACGCCGAAGTC RPE_1680 1871919 - 1873115 + | RND family efflux transporter MFP subunit TERM 1704 1874780 - 1874753 - g 83 -12.7 -4.07568 | CTGGTTCGCGCAAAA GGTCGATGCGG TGTTCT CCGCCTCGACC CGGTGGTACGGACGC RPE_1681 1873254 - 1876358 + | acriflavin resistance protein TERM 1705 1876411 - 1876371 - f 100 -20.6 -3.73224 | gap 1, opp_overlap 1876376, overlap 1876372 1876376 TGAGGCTCGAGCAAA TGAAACGCCGCGACGCTCC CTCC GGA-CGTCGCGGCGTTTCG ATTCCGAACGCCGCG TERM 1706 1876410 - 1876372 - f 100 -24.1 -2.8372 | gap 1, opp_overlap 1876376, overlap 1876371 1876376 GAGGCTCGAGCAAAT GAAACGCCGCGACGCTCC CTCC GGA-CGTCGCGGCGTTTC GATTCCGAACGCCGC TERM 1707 1876406 - 1876376 - f 100 -19.1 -4.10552 | gap 1, opp_overlap 1876376, overlap 1876372 1876371 CTCGAGCAAATGAAA CGCCGCGACGCTCC CTCC GGA-CGTCGCGGCG TTTCGATTCCGAACG TERM 1708 1876376 - 1876406 + F 100 -19.1 -3.75153 | gap 1, opp_overlap 1876372 1876371 1876376 CTCGAGCAAATGAAA CGCCGCGACGCTCC CTCC GGA-CGTCGCGGCG TTTCGATTCCGAACG RPE_1682 1876441 - 1877694 + | D-amino-acid dehydrogenase RPE_1683 1877798 - 1878052 + | hypothetical protein RPE_1684 1878098 - 1878853 + | hypothetical protein TERM 1709 1879269 - 1879238 - g 79 -7.2 -4.65895 | opp_overlap 1879238, overlap 1879239 GCCGGCACGGAAAAA GTCACCACCGCGAT CGAG ACCGCGGTGTCGAG TTCGGTCGCCGAAGC RPE_1685 1879040 - 1879537 + | phasin 2 TERM 1710 1879568 - 1879584 + F 100 -15.1 -4.85782 | overlap 1879557 GACACGCGTCTCCGA GGCCCGC TTT GCGGGCC TTTCTTTTTGCGCGG RPE_1686 1879576 - 1880025 + | hypothetical protein TERM 1711 1880332 - 1880369 + T 71 -11.5 -3.53012 | gap 2, opp_overlap 1880317, overlap 1880332 CGGGGCAGCGCGTAC T-TC-ACCTCTCCCCGC TCTTTC GCGGGGAGAGGTCGACA TTTGCGCGCAGCGCG TERM 1712 1881012 - 1881036 + T 70 -9.9 -3.55444 | opp_overlap 1881000 ACAGCGGACTACGCG TCCGCTTCGCG CGT CACGATGCGGA TTTCAGAGGTGAGCG RPE_1687 1882231 - 1881005 - | OsmC-like protein TERM 1713 1882016 - 1881995 - G 72 -7.3 -4.2558 | GACGTTGGAGGAAAA CGTCGAATT GGCG AATTCGCCG TCGCTGAGGCCGAGC RPE_1688 1883080 - 1882418 - | oxidoreductase, molybdopterin binding TERM 1714 1883164 - 1883179 + r 83 -9 -4.29738 | overlap 1883143 CCGTTGCCCAGCGTC GCGATC TTTC GATCGC TTTTCGTCGCTCTCG RPE_1689 1884121 - 1883198 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 1715 1883811 - 1883785 - G 74 -15.8 -2.62184 | CGCCCGCCCACATCA GCGCGATGGCGG ATT CCGCCACCGCGG TGTCGCCATAGCCGC RPE_1690 1884266 - 1884141 - | amidase, hydantoinase/carbamoylase RPE_1691 1885264 - 1884308 - | LysR family transcriptional regulator RPE_1692 1885378 - 1886193 + | hypothetical protein TERM 1716 1886408 - 1886395 - g 70 -2.3 -4.59773 | GTCGACGCCCAAAAA GCGTT CGAA ACCGC GGCCGAGCTGATCAA RPE_1693 1886242 - 1887486 + | extracellular ligand-binding receptor TERM 1717 1887696 - 1887749 + F 90 -17.8 -3.09635 | gap 3, opp_overlap 1887701 1887706 1887710, overlap 1887702 1887706 1887710 GCGCCGTCATTGCGA GCGAACCGAAGCAATCCAG-AGCCACG CAA CGTGACTCCTGGATTGCTTC-GT-CGC TTCGCTCCTCGCAAT TERM 1718 1887746 - 1887701 - f 93 -20.7 -3.06183 | gap 1, opp_overlap 1887696 1887702 1887706 1887710, overlap 1887706 1887710 GTCATTGCGAGCGAA CCGAAGCAATCCA-GAGCCACG CAA CGTGACTCCTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 1719 1887702 - 1887745 + F 100 -22 -2.55544 | gap 1, opp_overlap 1887701 1887706 1887710, overlap 1887696 1887706 1887710 TCATTGCGAGCGAAC CGAAGCAATCCAG-AGCCACG CAA CGTGACTCCTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 1720 1887741 - 1887706 - f 91 -17.8 -3.19192 | gap 1, opp_overlap 1887702 1887696 1887706 1887710, overlap 1887701 1887710 TGCGAGCGAACCGAA GCAATCCA-GAGCCACG CAA CGTGACTCCTGGATTGC TTCGTCGCTTCGCTC TERM 1721 1887706 - 1887741 + F 83 -15.6 -3.22388 | gap 1, opp_overlap 1887706 1887701 1887710, overlap 1887702 1887696 1887710 TGCGAGCGAACCGAA GCAATCCAG-AGCCACG CAA CGTGACTCCTGGATTGC TTCGTCGCTTCGCTC TERM 1722 1887737 - 1887710 - f 71 -11.4 -3.40788 | gap 1, opp_overlap 1887706 1887702 1887696 1887710, overlap 1887706 1887701 AGCGAACCGAAGCAA TCCA-GAGCCACG CAA CGTGACTCCTGGA TTGCTTCGTCGCTTC TERM 1723 1887839 - 1887854 + G 72 -4.6 -4.54047 | CAGTCCCTGGCGAGC GGCCTG CTGA TGGGCC TTTTGTATGGGCTGA TERM 1724 1887999 - 1888024 + G 89 -11.1 -4.1891 | overlap 1888002 TCGACCCCTTGCTGG CGATGCCGCTG GTCG CGGCGGCGTTG TTTGTCTTCGGCGCG TERM 1725 1888002 - 1888021 + G 80 -9.2 -4.21773 | overlap 1887999 ACCCCTTGCTGGCGA TGCCGCTG GTCG CGGCGGCG TTGTTTGTCTTCGGC TERM 1726 1888408 - 1888447 + G 79 -12 -3.8397 | overlap 1888394 GGGCTGGGGCCTCGG CGCCGCCTTGGTCGGGCT CGCC GGCGCGATCATGGCGACG TTCTTCTACATCTAT RPE_1694 1887803 - 1888681 + | inner-membrane translocator RPE_1695 1888681 - 1889661 + | inner-membrane translocator RPE_1696 1889658 - 1890389 + | ABC transporter related RPE_1697 1890373 - 1891077 + | ABC transporter related TERM 1727 1891118 - 1891161 + T 81 -15.4 -3.06183 | gap 1, opp_overlap 1891118 1891123, overlap 1891123 GTCATTGCGAGCGAA GCGAAGCAATCCAAGCCCCGG TGC TCGACGCT-GGATTGCTTCGC TTCGCTCGCAATGAC TERM 1728 1891161 - 1891118 - T 88 -16.9 -3.06183 | gap 1, opp_overlap 1891118 1891123, overlap 1891123 GTCATTGCGAGCGAA GCGAAGCAATCCAAGCCCCG GTGCT CGACGC-TGGATTGCTTCGC TTCGCTCGCAATGAC RPE_1698 1891479 - 1891192 - | excinuclease ABC subunit C TERM 1729 1891558 - 1891599 + H 100 -21.7 -3.06183 | opp_overlap 1891558 1891563 1891567, overlap 1891563 1891567 GTCATTGCGAGCGAA GCGAAGCAATCCAGGCCCG GGTT CGGCGCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 1730 1891599 - 1891558 - H 100 -21.7 -3.06183 | opp_overlap 1891558 1891563 1891567, overlap 1891563 1891567 GTCATTGCGAGCGAA GCGAAGCAATCCAGGCCCG GGTT CGGCGCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 1731 1891563 - 1891594 + H 73 -13 -3.19192 | opp_overlap 1891563 1891558 1891567, overlap 1891558 1891567 TGCGAGCGAAGCGAA GCAATCCAGGCCCG GGTT CGGCGCTGGATTGC TTCGCTTCGCTCGCA TERM 1732 1891594 - 1891563 - H 73 -13 -3.19192 | opp_overlap 1891558 1891563 1891567, overlap 1891558 1891567 TGCGAGCGAAGCGAA GCAATCCAGGCCCG GGTT CGGCGCTGGATTGC TTCGCTTCGCTCGCA RPE_1699 1891641 - 1892423 + | hydroxypyruvate isomerase RPE_1700 1892555 - 1893673 + | transposase IS116/IS110/IS902 family protein TERM 1733 1893710 - 1893678 - T 91 -19.1 -2.87211 | overlap 1893656 1893696 1893697 ACGCCGCCTGAGAGA TCGGCCGGCAGGCGA CAA TCGCCTGGCGGCCGG GCCGGAGCTGCAAGA RPE_1701 1895512 - 1894004 - | acetyl-CoA acetyltransferase TERM 1734 1894663 - 1894649 - G 81 -4.2 -5.00616 | opp_overlap 1894652 GTGGCTTTCAAAAAA CTGGTC GCG GATCAG ATAGTCGCGCGGCTC TERM 1735 1894949 - 1894988 + g 76 -8.4 -4.25104 | gap 1, opp_overlap 1894930 GCCGGATTCCGCGAT CGCCTGCCGCGGGGTCTGG CCC CAATGCGCCGCGGT-GGCG TTTTCGTAGAACGGA RPE_1702 1896329 - 1895541 - | short-chain dehydrogenase/reductase SDR RPE_1703 1896496 - 1897293 + | enoyl-CoA hydratase RPE_1704 1897309 - 1898301 + | aminoglycoside phosphotransferase RPE_1705 1898317 - 1898709 + | hypothetical protein TERM 1736 1898765 - 1898811 + T 100 -19.8 -3.78953 | gap 2, opp_overlap 1898743 1898770 1898775 1898779, overlap 1898771 ACCACGTCATTGCGA GCGAAGCGAAGCAATCCAGTGC GCCGA GCACTGGATTGCTTCG-T-CGC TTTGCTCCTCGCAAT TERM 1737 1898808 - 1898770 - T 93 -20.5 -3.06183 | opp_overlap 1898765 1898771, overlap 1898775 1898779 GTCATTGCGAGCGAA GCGAAGCAATCCAGTGC GCCGA GCACTGGATTGCTTCGT CGCTTTGCTCCTCGC TERM 1738 1898771 - 1898807 + T 100 -24 -2.68775 | opp_overlap 1898770 1898775 1898779, overlap 1898765 TCATTGCGAGCGAAG CGAAGCAATCCAGTGC GCCGA GCACTGGATTGCTTCG TCGCTTTGCTCCTCG TERM 1739 1898803 - 1898775 - T 89 -17.6 -3.19192 | opp_overlap 1898771 1898765, overlap 1898770 1898779 TGCGAGCGAAGCGAA GCAATCCAGTGC GCCGA GCACTGGATTGC TTCGTCGCTTTGCTC TERM 1740 1898799 - 1898779 - T 71 -11.2 -3.40788 | opp_overlap 1898771 1898765, overlap 1898775 1898770 AGCGAAGCGAAGCAA TCCAGTGC GCCGA GCACTGGA TTGCTTCGTCGCTTT TERM 1741 1898869 - 1898840 - T 70 -12.2 -3.16944 | gap 1, overlap 1898838 1898833 ATGACGAACTTAAGA CGCTGAGGCGCAC TTATG GCGCGCCTCAG-G TTAACGTGTGAATTG RPE_1706 1899372 - 1898887 - | redoxin domain-containing protein RPE_1707 1901239 - 1899548 - | acyl-CoA synthetase TERM 1742 1899922 - 1899969 + g 70 -12.9 -3.05844 | opp_overlap 1899933, overlap 1899937 CGCCGATGTCGCCGG TG-CGGAAGAAGCCGTCGGCGGT GGTC ACCATCG-CGGTTTCTTCCGGCA TGTTCCAGTAGCCGG TERM 1743 1899937 - 1899957 + g 72 -8.9 -4.16284 | opp_overlap 1899933, overlap 1899922 TGCGGAAGAAGCCGT CGGCGGTGG TCA CCATCGCGG TTTCTTCCGGCATGT TERM 1744 1900523 - 1900504 - G 70 -13.6 -3.01924 | opp_overlap 1900511 1900511 GATCTTTCGGCAACA GCTGCAGC GCCG GCTGCAGC CAGGCGTCGTTCTGC RPE_1708 1902650 - 1901493 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 1745 1902493 - 1902513 + g 75 -13.9 -3.29471 | overlap 1902494 TTGGTCTGGGTCATG CCGAGCCGC TGC GCGGCGCGG TTCATCTGCTCGGAG TERM 1746 1902891 - 1902834 - R 80 -14.7 -3.14132 | gap 1, overlap 1902839 1902883 GTCGGCCTCGACCAA CAGCAGCGCTTCGGCCTGCG-CGGCGCG CGG CGCGGCGGCGCAGAGCAAGGCGCCGGCG AGCACGGTGAGGACG TERM 1747 1902886 - 1902839 - R 81 -16.2 -2.77523 | gap 1, overlap 1902834 1902883 CCTCGACCAACAGCA GCGCTTCGGCCTGCG-CGGCGCG CGG CGCGGCGGCGCAGAGCAAGGCGC CGGCGAGCACGGTGA RPE_1709 1904986 - 1903178 - | cyclic beta-1,2-glucan ABC transporter TERM 1748 1903352 - 1903342 - G 75 -6.8 -4.4261 | TGTCGAACACCAAAA TGCG CGT CGCA TGGCGGATGGTGGAG TERM 1749 1904321 - 1904275 - G 74 -15 -3.04144 | overlap 1904254 1904291 TCTGCATCGCCAACA GCCGGTCGGCGACGAAGCGCAG CCC CTGCACCTCGGCGTCGATCCGC ACAAAACTCTGCACC TERM 1750 1905513 - 1905525 + G 75 -3.3 -4.72272 | GCCGCAGGGACCGCA GAACG CGC CGTAC TTTTTGATCGCCGCC RPE_1710 1905328 - 1905720 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TERM 1751 1905839 - 1905827 - g 77 -6.9 -4.56775 | opp_overlap 1905827 ATGGTCGCGTAAAAA CAGCC TGT GGCCG TTCAATTTCGGGCTG TERM 1752 1905898 - 1905952 + G 71 -9.7 -3.81287 | CGCTGACGCCGGTAT TCGATCAGGCGCGGTTCGGCGCCGA GGTGA TCCGCGCCTCGCCGCGGCAGGCCGA TTTGCTGGTGGTGTC RPE_1711 1905717 - 1906334 + | NADH-quinone oxidoreductase, B subunit RPE_1712 1906331 - 1908076 + | bifunctional NADH:ubiquinone oxidoreductase subunit C/D RPE_1713 1908073 - 1908546 + | NADH dehydrogenase subunit E TERM 1753 1909694 - 1909717 + G 70 -2.3 -4.64766 | gap 1, overlap 1909694 1909695 GCACATGCATGTCGA C-CTGGCCGG CCCGT CCGGCCGCAG TTTTTGCGATCTGAA RPE_1714 1908543 - 1909829 + | NADH dehydrogenase (quinone) TERM 1754 1911008 - 1910962 - g 90 -18.7 -3.17212 | overlap 1910922 1910923 CGAGGATCTCACCAA CACCGCGCCGCGG-CTGGCGCTG GCG CTGCGGCAGGCCGCG-CGCGGCG CCGAGCGAGAACTCG TERM 1755 1911056 - 1911034 - g 70 -6.1 -4.27584 | ACTCGCAACGCAAAA GGGCGTGCC GCAAT GGCTCGACC AGGCGGTGCGCACCG TERM 1756 1911835 - 1911803 - g 70 -11.1 -3.53012 | CTCGCCGGCTTGAAA GGCGCGGCGCCCGAA GCG TCCTGCCGCTGCGCC CATGGCGAGGTCGCG TERM 1757 1912066 - 1912094 + G 72 -15.2 -2.70932 | opp_overlap 1912054 1912061 1912052 1912060 AGAGATCAACGGCCC GCTGCGCGGCGG CGATC CCGGCGCGCGGC TGATTGAGCCCGGCC TERM 1758 1912226 - 1912250 + G 76 -15 -3.1552 | gap 1, opp_overlap 1912206 1912219, overlap 1912225 GCCTCAAAGCTACTC GCCGCGCGCGC GCCG GCGC-CGCGGC TGTTGCTGCATCCGG RPE_1715 1909826 - 1912441 + | NADH dehydrogenase subunit G TERM 1759 1912497 - 1912507 + G 72 -8.2 -4.14739 | overlap 1912488 CATGGCGCTGTTGGT CGCC GCC GGCG TTTTCACCTGGGTGG TERM 1760 1913198 - 1913221 + G 73 -14.6 -2.90723 | gap 1 TCTTCGGCGGCTGGC TCGGGCCGTGG CTG CC-CGGCCCGA TCTGGTTCGGGCTCA RPE_1716 1912438 - 1913397 + | respiratory-chain NADH dehydrogenase, subunit 1 RPE_1717 1913394 - 1913915 + | NADH dehydrogenase subunit I RPE_1718 1913912 - 1914412 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 TERM 1761 1914444 - 1914469 + G 70 -13.2 -3.04792 | overlap 1914459 1914467 CGGATTCATGATCCT CGCCGCCGGC CTGTTC GCCGCCGGCG TGTTCGGCGTGCTGG RPE_1719 1914409 - 1914717 + | NADH-ubiquinone oxidoreductase, chain 4L TERM 1762 1914815 - 1914851 + G 73 -14.3 -3.21416 | overlap 1914804 1914818 GCGCGCGCTGGTGAT CATCGGCGGCGTCACCG CCG CGGTGCTGCCGGCGCTG TTGATGCTGCCGATC TERM 1763 1914818 - 1914848 + G 71 -14.6 -2.50016 | overlap 1914804 1914815 CGCGCTGGTGATCAT CGGCGGCGTCACCG CCG CGGTGCTGCCGGCG CTGTTGATGCTGCCG TERM 1764 1915936 - 1915920 - g 73 -9.3 -3.9392 | TGGTACTCGAAAGAA GCCGTGC TCG GCGCGGC CTGGGCCAGCGGGCT TERM 1765 1916091 - 1916118 + G 78 -14.9 -3.30635 | gap 1, overlap 1916082 CTTGCGGTCTGGGCG CCGCTCAGCGCG CTCGC CGCGCTG-GCGG TTGTCGCGGGCTTTG RPE_1720 1914714 - 1916681 + | proton-translocating NADH-quinone oxidoreductase, chain L RPE_1721 1916672 - 1918114 + | proton-translocating NADH-quinone oxidoreductase, chain M TERM 1766 1918235 - 1918201 - g 77 -12.7 -3.72576 | overlap 1918202 GCGCCGGTCACCAAA TCCGCCGCGGCGGCG CGGAT CGCTGCCGCGACAGG TCTCGCCGTTGCGGC TERM 1767 1918234 - 1918202 - g 79 -16.2 -2.83403 | overlap 1918201 CGCCGGTCACCAAAT CCGCCGCGGCGGCG CGGAT CGCTGCCGCGACAG GTCTCGCCGTTGCGG TERM 1768 1918766 - 1918795 + G 80 -14.9 -3.48276 | overlap 1918762 ATGCCTTCCAGGGCG CGCCGGCCGGCGC CGCG GCTTTGGCCGGCG TTGTCTCCAAGGCGG TERM 1769 1919193 - 1919211 + G 73 -13.8 -3.14881 | overlap 1919181 GTTGTCGTTGGCGGG GCTGCCGG TGG CCGGCGGC TTCGTCGCCAAATTG RPE_1722 1918111 - 1919481 + | NADH dehydrogenase (quinone) TERM 1770 1919545 - 1919600 + T 100 -30 -3.63515 | opp_overlap 1919564 GAGCAGCGTAAGCTG CGAGCGAGCCCGGAATCCATAATCCC TGCA GGGCTTATGGATTCCGGACTTGCTCG TTCTTCGAACTCGCA TERM 1771 1919710 - 1919681 - T 100 -18.7 -4.98531 | TCTCCAAACGAAAAA GCGCAGGATGACA TGGG TGTCACCCTGCGC TGCAATCGCGGTGTA RPE_1723 1921049 - 1919742 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1772 1920824 - 1920778 - G 78 -9.8 -4.13767 | TTCTGGATCGCAAAA GCCGACGCCGCCTGGCCCGAGG CGA CAGCGAGCGCGGCGACGCCGCC CTCCAGCGCGGCAAC TERM 1773 1921306 - 1921287 - R 100 -15 -5.06414 | CGCGCCCAAGAAAAA GGCCGCCA TTGC TGGCGGCC AAGTCTAGGGAGGAA fixK 1922068 - 1921379 - | transcriptional regulator FixK TERM 1774 1922003 - 1922015 + g 70 -10.5 -3.62522 | CGAGAACTGGTCGGA CGCGG GGG CCGCG TTGTTGCCCGGCTTG RPE_1725 1922611 - 1922195 - | response regulator receiver protein fixJ 1923308 - 1922691 - | response regulator FixJ RPE_1727 1924833 - 1923298 - | PAS/PAC sensor signal transduction histidine kinase RPE_1728 1925700 - 1924972 - | signal-transduction protein RPE_1729 1926655 - 1925822 - | UspA domain-containing protein RPE_1730 1926803 - 1927684 + | UspA domain-containing protein TERM 1775 1927801 - 1927850 + G 77 -13.5 -3.53012 | gap 1 GGCCCCCGGCAGCGA TGCCGCCGATCGGATGTTCCATGC CTC GC-TGGCGCGGCTGACCGGCGGCA TTTCGCCGGCGGCGC RPE_1731 1927694 - 1929487 + | poly-beta-hydroxybutyrate polymerase domain-containing protein RPE_1732 1931011 - 1929497 - | hypothetical protein TERM 1776 1931231 - 1931255 + H 76 -8.6 -4.15508 | gap 1 CGCGCGCGGGTATTT GCCGGCGGTTA CCCC TGACC-CCGGC TTTTGCAGATTGATT RPE_1733 1931317 - 1931706 + | CBS domain-containing protein RPE_1734 1931878 - 1934586 + | GCN5-related N-acetyltransferase RPE_1735 1935531 - 1934962 - | hypothetical protein TERM 1777 1935198 - 1935182 - G 73 -3.5 -4.58395 | overlap 1935183 GCGATCTCGGAAAAA TGCGTCC AGG GGCCGCT GCCGAAGGCCTCGAT RPE_1736 1936072 - 1935638 - | hypothetical protein TERM 1778 1935828 - 1935872 + g 75 -11.4 -3.66018 | gap 2, opp_overlap 1935813 TGGCCGCGGCTTTCG GCCTCGTGCGGGCGCTGGCGCG CCA CGCGGCAG-GCCT-CGCGATGC TTCTTCCACTGCTCG RPE_1737 1936253 - 1937401 + | hypothetical protein RPE_1738 1937404 - 1938177 + | ABC transporter related TERM 1779 1938592 - 1938541 - g 75 -7.1 -4.42386 | gap 1 GCGGTAGCCAGAAAA CCGCATCCGGC-CCGGTGCCGACG CTGAT CGCCGATCCCGGCGCCGGACAGAG CATGACCCAGGCCGC RPE_1739 1938183 - 1939337 + | hypothetical protein RPE_1740 1939691 - 1939338 - | cytochrome c, class I TERM 1780 1939991 - 1939981 - g 72 -6.8 -4.20696 | CCAGGAATTCGAAAA GCTG GCC CAGC ACGTGCGCTACGCGC TERM 1781 1940294 - 1940272 - g 75 -13.5 -3.47322 | GCTGATGAGAATGAA CGAGTTCGC CACCC GCGAACTCG GGCAGGCTCAGGACC RPE_1741 1939859 - 1940578 + | Crp/FNR family transcriptional regulator TERM 1782 1940973 - 1940991 + G 72 -13.8 -3.05844 | GATTTCCTCACCGTG GCGCCGCT GTG GGCGGCGC TGTTCGGCTCCGACG RPE_1742 1940625 - 1941851 + | cyclic nucleotide-binding protein TERM 1783 1942076 - 1942100 + T 71 -9.1 -3.72576 | opp_overlap 1942068, overlap 1942077 TACAGGAGCCGACCC GGTCGCGCCGC ATG GAGGCGCGGCA TTTCATGACACCAAA TERM 1784 1942077 - 1942099 + T 70 -12.6 -2.83403 | opp_overlap 1942068, overlap 1942076 ACAGGAGCCGACCCG GTCGCGCCGC ATG GAGGCGCGGC ATTTCATGACACCAA TERM 1785 1942196 - 1942184 - T 71 -4.7 -4.50761 | opp_overlap 1942186 1942193, overlap 1942186 ATGAAGCGAAACAAA GCTGC GAG GCGGC GCATGATTGCCGTTA RPE_1744 1942514 - 1942245 - | hypothetical protein RPE_1745 1943312 - 1942929 - | hypothetical protein TERM 1786 1943331 - 1943314 - H 73 -8.3 -4.01078 | AAAATTGAGGACAAA GCGCGGC ATGC GGCGCGC CCACGGTGGATAAGT RPE_1746 1943407 - 1943646 + | hypothetical protein RPE_1747 1943922 - 1944554 + | urease accessory protein UreG TERM 1787 1945110 - 1945077 - g 72 -14.5 -2.79796 | opp_overlap 1945077 1945076 TGCGACCGGACGAGA TCGACGCCGCCCAGC AGAT GCTGAGCGACGCCGG CTTTCCCGATCCGAC TERM 1788 1945670 - 1945650 - g 71 -14.7 -2.52464 | opp_overlap 1945650, overlap 1945626 1945623 CCCGCGCGCAACGCA CCGCGGCGA TCG TCGCCGCGA TCGGGGGCGCGCTCA RPE_1748 1944761 - 1946416 + | signal transduction histidine kinase TERM 1789 1946670 - 1946641 - T 100 -19.4 -3.889 | opp_overlap 1946639 1946638 TTCAACGACACCAAA CCAATGGCCGGG ACAAAG CCCGGCCATTGG AAGTTTGATCGATAT RPE_1749 1947266 - 1946718 - | RNA polymerase sigma factor RPE_1750 1947475 - 1947266 - | hypothetical protein TERM 1790 1947580 - 1947597 + H 76 -6.3 -4.4891 | gap 1, opp_overlap 1947580, overlap 1947581 AATGCTGGGCTCAAA GTTC-CGG GCG CCGGGAAC TTTTCTCATCCTCAG RPE_1751 1947677 - 1948483 + | two-component response regulator TERM 1791 1948670 - 1948638 - f 100 -17.8 -4.19735 | CCGGGCAAAATGAAA GGGGCGCGACTG GCATCACCA CAGTCGCGCCCC ACGTCTGCCGGTTTT TERM 1792 1948739 - 1948753 + F 78 -2.8 -5.00616 | ACGGCCCAAAAGTTT CACC GCGGCCG GGTG TTTTTTGCCACACGC RPE_1752 1948860 - 1949321 + | hypothetical protein TERM 1793 1950011 - 1949971 - T 88 -17.6 -2.98942 | gap 1 AGCGGCCGAGAGAGA TTCCGGGTTCGCCCGCCGC TCAC GCGGCAGACGC-CCCGGAA TGACGCCGTAGGATG TERM 1794 1950624 - 1950603 - T 93 -13.7 -4.18762 | gap 1 AACGTTCAGCCAAAA CCCG-GGCGC GAC GCGCCGCGGG AACGGGACGGCATGC RPE_1753 1952194 - 1950956 - | hypothetical protein TERM 1795 1951249 - 1951218 - G 78 -10.2 -4.09739 | CCAAGCGTCGGAAAA CTGACGATCCCGAC CAGC GTCAGGATGATCAG CATCACGAACGGGCC TERM 1796 1952995 - 1952943 - g 89 -14.6 -4.07568 | gap 1, opp_overlap 1952943 1952947 TGGTGCTGCCCAAAA CCGCGCCGCGGCTCGAGGCGCGCAC GCCG GAGCGAGCGCCG-GCCGCGTCCCGG CTTCTGCCGGGCCGT RPE_1754 1952282 - 1953061 + | ErfK/YbiS/YcfS/YnhG RPE_1755 1953083 - 1953730 + | hypothetical protein RPE_1756 1953834 - 1953995 + | hypothetical protein TERM 1797 1954012 - 1954033 + T 100 -17.3 -3.70109 | opp_overlap 1954012 CCCAGCCAAACAAAA GCCCCGGCA TCGC TGCCGGGGC TTGTTAGGTAATGTG TERM 1798 1954033 - 1954012 - T 100 -17.3 -4.90778 | opp_overlap 1954012 CCCAGCCAAACAAAA GCCCCGGCA TCGC TGCCGGGGC TTGTTAGGTAATGTG RPE_1757 1956223 - 1954061 - | malate synthase G RPE_1758 1957226 - 1956360 - | sulfate ABC transporter, inner membrane subunit CysW TERM 1799 1956864 - 1956852 - G 72 -6.9 -4.26463 | ATAGACGAACAGAAA CGCCA CGC CGGCG ACGATCGGTGAGATC RPE_1759 1958053 - 1957226 - | sulfate ABC transporter, inner membrane subunit CysT TERM 1800 1958114 - 1958161 + r 75 -14.8 -2.78384 | gap 1, opp_overlap 1958108, overlap 1958140 GTGAGAAATCCGATG CCGTCATTCCGGG-ATGCGCGCC GCA GGCGCGCAGACCCGGAATCTCGA TGTGGTGGCGAAGAG TERM 1801 1958174 - 1958225 + r 72 -13.6 -2.75382 | gap 1, opp_overlap 1958180, overlap 1958140 1958173 CGATGTGGTGGCGAA GAGAGATTCCGGGTTCGCGCGCAGC TTC GCTGCGCCCGC-CCCGGAATGACAC TCATTGAGTCCGGTG TERM 1802 1958219 - 1958180 - R 91 -18.6 -3.09273 | gap 1, opp_overlap 1958140 1958174 1958173 GGTGGCGAAGAGAGA TTCCGGGTTCGCGCGCAGC TTC GCTGCGCCCGC-CCCGGAA TGACACTCATTGAGT RPE_1760 1959413 - 1958406 - | sulfate ABC transporter, periplasmic sulfate-binding protein RPE_1761 1961355 - 1959442 - | Sulfate adenylyltransferase RPE_1762 1962254 - 1961364 - | sulfate adenylyltransferase subunit 2 RPE_1763 1962398 - 1963819 + | uroporphyrin-III C-methyltransferase TERM 1803 1963952 - 1963977 + G 70 -11.1 -3.62046 | gap 1, overlap 1963949 CCGATGCCGCGATCG TGCGCGAGGCGG AGC CCG-CGCGCGCA TTGTTGGCCGAATCG RPE_1764 1963816 - 1964130 + | hypothetical protein RPE_1765 1964141 - 1965796 + | nitrite/sulfite reductase hemoprotein beta subunit TERM 1804 1966110 - 1966124 + G 77 -3.5 -4.72272 | ACCGGCCAAGTGCTG CGCGA TCAGT TCGTG TTTTTGCTGCGCAAC RPE_1766 1965783 - 1966301 + | hypothetical protein RPE_1767 1966298 - 1967032 + | phosphoadenosine phosphosulfate reductase RPE_1768 1967150 - 1968139 + | thiosulphate-binding protein RPE_1769 1968392 - 1969228 + | sulfate ABC transporter, inner membrane subunit CysT RPE_1770 1969232 - 1970134 + | sulfate ABC transporter, inner membrane subunit CysW TERM 1805 1970580 - 1970532 - g 77 -13.8 -3.35813 | gap 2, overlap 1970533 CGCTATCCGAACCAA TTGTCCGGCGGCCAGCGCCAGCGC ATC GCGCTGGC-CCGGGCGCTGG-CGA TCGAGCCGCGCATCC RPE_1771 1970124 - 1971173 + | sulphate transport system permease protein 1 TERM 1806 1971285 - 1971298 + G 83 -9.5 -4.30576 | GATCCGTGGGGGAGT GGCCG TGTG CGGCC TTTTGCTGCTGGCGG RPE_1772 1971268 - 1971774 + | allergen V5/Tpx-1-like protein RPE_1773 1971930 - 1972718 + | 3-hydroxybutyrate dehydrogenase TERM 1807 1973071 - 1973103 + G 77 -9.8 -3.99374 | gap 1, overlap 1973072 CTGCTGCAATTCTTG ACCCGGT-TCACCGG CGTG CCGGTGGCGCCGGGG TTCTTCTTCATGGCG TERM 1808 1973072 - 1973102 + G 70 -13.3 -2.99142 | gap 1, overlap 1973071 TGCTGCAATTCTTGA CCCGGT-TCACCGG CGTG CCGGTGGCGCCGGG GTTCTTCTTCATGGC TERM 1809 1973563 - 1973578 + G 79 -6.8 -4.64676 | gap 1, overlap 1973526 TTGTGGCTGGCGCTG GCGGCGC TGA GCG-CGC TTTTGTTCGCGCTGA RPE_1774 1972900 - 1973985 + | hypothetical protein RPE_1775 1974261 - 1974001 - | hypothetical protein RPE_1776 1974535 - 1974230 - | hypothetical protein RPE_1777 1974897 - 1974679 - | hypothetical protein RPE_1778 1975035 - 1975790 + | Crp/FNR family transcriptional regulator TERM 1810 1976269 - 1976254 - f 70 -11.8 -3.1886 | AGCTAACTGTACCAA CGCCCG CAGA CGGGCG GTATGGCTGGAGCTC TERM 1811 1978273 - 1978308 + G 79 -4.6 -4.8048 | overlap 1978264 1978263 1978264 AGGCCAGCGTGCTCG CGAGTTCCGGCCCG GAATACAG CGGGCGCGAGCTTG TTTTTCATCTCAGGG RPE_1779 1977399 - 1978562 + | peptidase C14, caspase catalytic subunit p20 RPE_1780 1980237 - 1978660 - | acyl-CoA synthetase TERM 1812 1979253 - 1979279 + g 74 -15.8 -2.65264 | CGATGACGTGGTCCT CCGGCGCCAGCG CGA CGATGGTGCCGG TGGTCTCGGTCATGC TERM 1813 1980580 - 1980545 - R 93 -16.2 -3.76224 | gap 1, opp_overlap 1980579 GGTGCATCGATCAAA GCCGT-CATGCCCGGGC TTG ACCCGGGCATCCACGGC CTCAACGGAGGCTTT TERM 1814 1980579 - 1980592 + r 73 -8.1 -4.04576 | opp_overlap 1980545 ACCCGGGCATCCACG GCCTC AACG GAGGC TTTGCTTGTATCCGT TERM 1815 1980604 - 1980637 + r 77 -13.9 -3.31208 | gap 1, overlap 1980601 AGGCTTTGCTTGTAT CCGTGGATGGCCGGGT CAA GCCCGGCCATG-ACGG TGTATTGTTGTCCGG RPE_1781 1981527 - 1980655 - | short-chain dehydrogenase/reductase SDR RPE_1782 1981630 - 1982442 + | enoyl-CoA hydratase RPE_1783 1982559 - 1984103 + | acyl-CoA synthetase RPE_1784 1984994 - 1984104 - | LysR family transcriptional regulator TERM 1816 1984607 - 1984563 - G 83 -14.3 -3.85698 | opp_overlap 1984564 CTCGCCCTCCACAAA GCCGAGGTCGGCGC-GGCCGT CGTGC ACGGCCTGCGCCG-CCTGCGC GGTGTTGGAAATGTC RPE_1785 1986087 - 1984999 - | hypothetical protein TERM 1817 1985730 - 1985684 - G 70 -6.3 -4.27316 | gap 1, overlap 1985685 GTCGCGAATGCAAAA CTCGCCAGCAGC-GTCGCGGCG ATGA CGCCGAGGCCGCGGCCGCCGAC CGCGACCAGTTGCAC RPE_1786 1989013 - 1986218 - | multi-sensor hybrid histidine kinase TERM 1818 1987361 - 1987396 + g 71 -3 -4.59773 | overlap 1987363 ATTGTTGAAGTCGTG CGCGATGCCGCCGGTC AGTT GTCCGATCGCGTCGAG TTTTTGCGACTGCCG RPE_1787 1989508 - 1989251 - | hypothetical protein TERM 1819 1989611 - 1989590 - H 72 -2.2 -4.68724 | gap 1, overlap 1989592 TGACCCAAGACAAAA CTTGGC-GC GGTCG GCAGCCATG AGCCCGAACGGGTTT RPE_1788 1989679 - 1989960 + | type IV pilus assembly PilZ RPE_1789 1991046 - 1990000 - | metal dependent phosphohydrolase TERM 1820 1990643 - 1990668 + g 79 -13.2 -3.64703 | AACATCGACTTGAAC GCCTCGGCGC CGCCCT GCGCCGCGGC TTTGGCTGCCGCCAC TERM 1821 1991287 - 1991310 + H 77 -13.8 -3.36202 | opp_overlap 1991288, overlap 1991273 1991288 GTTTAATCTGATAGT ACCCCGGCCT TGAT AGGCCGGGGA TTATACAGTGTATAT TERM 1822 1991288 - 1991309 + H 83 -17.3 -2.61239 | opp_overlap 1991288, overlap 1991287 1991273 TTTAATCTGATAGTA CCCCGGCCT TGAT AGGCCGGGG ATTATACAGTGTATA TERM 1823 1991309 - 1991288 - H 83 -17.3 -2.64794 | opp_overlap 1991287 1991273 1991288 TTTAATCTGATAGTA CCCCGGCCT TGAT AGGCCGGGG ATTATACAGTGTATA TERM 1824 1991434 - 1991451 + G 77 -14.1 -3.36749 | TTCGGCCATCCACTG GCCGGCG CCGC CGCCGGC TTGGTCTTCACCCTC TERM 1825 1992009 - 1991951 - g 80 -9.3 -4.16842 | gap 2, overlap 1991952 GCGATGCCGAAGAAA GCTGCGACGTCGCGGTGGTCGGCGCCGGC ATC GGCGG-GCTGACCGCCGCGGCGCTGCTG- GCCGACAGCGGACTG TERM 1826 1992009 - 1991952 - g 78 -15.3 -3.09784 | gap 1, overlap 1991951 CGATGCCGAAGAAAG CTGCGACGTCGCGGTGGTCGGCGCCGGC ATC GGCGG-GCTGACCGCCGCGGCGCTGCTG GCCGACAGCGGACTG RPE_1790 1991353 - 1993497 + | amine oxidase TERM 1827 1996150 - 1996160 + G 70 -2.4 -4.57569 | opp_overlap 1996148, overlap 1996149 TGCCGACGAAAAGCT GCGC GCC GCGA TTTTTGGCCGGATCA RPE_1791 1993634 - 1996417 + | phosphoenolpyruvate carboxylase TERM 1828 1996404 - 1996443 + F 70 -10.6 -3.6692 | opp_overlap 1996410, overlap 1996403 TCTCCGCGGGCTTGC GTAACAGCGGCTAGCGCG GCGA CGCGATCGCCGTTGGTGC TGTTTTCCGATCCGC TERM 1829 1997459 - 1997438 - g 73 -14.4 -3.19246 | overlap 1997427 1997451 GGAAGCCGAAGCCAA GGCGGCGG AAGAAG CCGCCGCC AAGGAATCCTCCAAG RPE_1792 1996794 - 1998134 + | OmpA/MotB domain-containing protein TERM 1830 1998187 - 1998166 - T 76 -11.5 -3.78329 | opp_overlap 1998168, overlap 1998168 CTTCATCAACGCAAA GAGCCCGCC GCGA GGCGGGCTT TTTCGTTGGCGCCAA TERM 1831 1998168 - 1998185 + T 100 -14.1 -4.8622 | opp_overlap 1998166 1998168 TCATCAACGCAAAGA GCCCGCC GCGA GGCGGGC TTTTTCGTTGGCGCC TERM 1832 1998185 - 1998168 - T 79 -14.1 -3.47526 | opp_overlap 1998168, overlap 1998166 TCATCAACGCAAAGA GCCCGCC GCGA GGCGGGC TTTTTCGTTGGCGCC TERM 1833 1998210 - 1998237 + T 81 -12.8 -3.71527 | opp_overlap 1998207, overlap 1998211 GGCGCCAAATCATCG ATGTAGACCTGC GGGT GCAGGTCTACAA TTTCAGTCATTGCGA TERM 1834 1998211 - 1998236 + T 81 -16.3 -2.82595 | opp_overlap 1998207, overlap 1998210 GCGCCAAATCATCGA TGTAGACCTGC GGGT GCAGGTCTACA ATTTCAGTCATTGCG TERM 1835 1998304 - 1998258 - T 75 -13.9 -3.06183 | gap 2, opp_overlap 1998263 1998267, overlap 1998263 1998267 GTCATTGCGAGCGAA GCGAAGCAATCCAG-G-GCCAAG CAG CGTGGCTCTCTGGATTGCTTCGT CGCTGCGCTCCTCGC RPE_1793 1999318 - 1998350 - | short-chain dehydrogenase/reductase SDR TERM 1836 1998612 - 1998626 + g 75 -2.7 -4.72497 | overlap 1998612 1998613 CCCATCTGCTGCATC CGCGC CACCC GCGCC TTTTCTTCCTCGGTC RPE_1794 2000623 - 1999484 - | putative lipid transfer protein RPE_1795 2001041 - 2000628 - | hypothetical protein TERM 1837 2001835 - 2001863 + G 100 -16 -4.4891 | gap 1, overlap 2001842 2001843 GCCGAGGCCGATGCG CCGGCGGTGGCGC GGCT GCGCCGC-GCCGG TTTTGTGGTGATCGG TERM 1838 2001842 - 2001862 + G 82 -16.1 -3.28864 | overlap 2001835 2001843 CCGATGCGCCGGCGG TGGCGCGGC TGC GCCGCGCCG GTTTTGTGGTGATCG TERM 1839 2001843 - 2001861 + G 80 -17.4 -2.56836 | overlap 2001842 2001835 CGATGCGCCGGCGGT GGCGCGGC TGC GCCGCGCC GGTTTTGTGGTGATC RPE_1796 2001517 - 2002866 + | amidase RPE_1797 2002859 - 2003545 + | hypothetical protein RPE_1798 2003601 - 2004824 + | hypothetical protein RPE_1799 2005123 - 2004902 - | hypothetical protein TERM 1840 2005229 - 2005209 - R 100 -14 -4.59376 | AGCATGAAACGAAAA TGGCCGGG ACGAG CCCGGCCA AAAGAACTGTTTCGA RPE_1800 2005593 - 2005264 - | hypothetical protein TERM 1841 2005668 - 2005718 + r 71 -13.9 -2.52464 | gap 1, opp_overlap 2005668 2005683 GACCGGCGCAGCGAA CGCTCTGCGAAGACACGCGTCGCC GGAT GGCGTTGCG-GTGCTCGCAGCGCG TGGGTTCAAGACCGC TERM 1842 2005718 - 2005668 - R 75 -13.9 -3.05596 | gap 1, opp_overlap 2005668, overlap 2005683 GACCGGCGCAGCGAA CGCTCTGCGAAGACACGCGTCGCC GGAT GGCGTTGCG-GTGCTCGCAGCGCG TGGGTTCAAGACCGC RPE_1801 2007554 - 2005932 - | hypothetical protein TERM 1843 2006959 - 2006933 - G 85 -6.5 -4.85599 | opp_overlap 2006914 2006919, overlap 2006936 CGGAGCCGACAAAAA TCATCGGCGCC TTGCT GTCGCCGATCA GCCTGGCCGCGGCTT RPE_1802 2007725 - 2008504 + | HpcH/HpaI aldolase RPE_1803 2008727 - 2009191 + | cache, type 2 TERM 1844 2009540 - 2009522 - g 70 -11.6 -3.44848 | overlap 2009520 GGCTGCGATCAAAGA GGCCTCGG CCG CCGCGGCC AGGATTCCCGGCGCC TERM 1845 2010269 - 2010240 - g 79 -4.9 -4.7173 | gap 1, overlap 2010244 GACGAGACCCAAAAA CTCAG-CACCGTGG TCA CCGCGGCATCCGAG GAGACCTCCGGCAAC TERM 1846 2010521 - 2010544 + G 89 -15.2 -4.15565 | opp_overlap 2010516 CACCATCGAATCCGC CCGCGCCGGG GAAG CCGGGCGCGG TTTTGCCGTGGTCGC RPE_1804 2009241 - 2010950 + | methyl-accepting chemotaxis sensory transducer TERM 1847 2011176 - 2011190 + G 74 -5.6 -4.56597 | overlap 2011177 2011179 ATGGCGCTCGCCGAG CTGCCG CTG CGGCAA TTTTTGGCCGAGGCG RPE_1805 2011017 - 2012405 + | ethanolamine ammonia lyase large subunit TERM 1848 2013963 - 2013946 - g 76 -8.3 -4.20932 | AACACCTACGGAAAA CGCCTGG CGAT CCCGGCG ACGCCGCAGCGCGCC RPE_1806 2012647 - 2014233 + | radical SAM domain-containing protein RPE_1807 2014244 - 2015029 + | ethanolamine ammonia-lyase small subunit TERM 1849 2015102 - 2015118 + F 77 -2.1 -5.00412 | opp_overlap 2015102, overlap 2015106 2015107 ATACCGTCTTGATAA TGATCGC GCG GCGCCCA TTTTTGATTATGTTT TERM 1850 2015623 - 2015651 + G 72 -11.8 -3.54129 | gap 2 CGGCCCGGCAGGCGC CAGCG-C-CCGGCA AGC TGCCGGCGGCGCTG TTTCCCGCCGATCTG RPE_1808 2015220 - 2017589 + | RND superfamily transporter TERM 1851 2017634 - 2017606 - T 100 -22.5 -5.28778 | ACCAGGCACAAAAAA CATCCCCCGCGGG CGA CCCGCGAGGGATG TCAAAACGCGCGGTG RPE_1809 2018168 - 2017668 - | hypothetical protein RPE_1810 2018737 - 2018976 + | hypothetical protein TERM 1852 2019078 - 2019124 + F 100 -19.4 -4.00868 | overlap 2019079 TTCCCTTATATGGCA TCGCGTTCCCTCCCTCTCCGGT CCG GCCGGGGAGCGATGGAGCGCGG TTTCCTTGTGCGTAA TERM 1853 2019079 - 2019123 + F 93 -20.7 -3.00039 | overlap 2019078 TCCCTTATATGGCAT CGCGTTCCCTCCCTCTCCGGT CCG GCCGGGGAGCGATGGAGCGCG GTTTCCTTGTGCGTA RPE_1811 2019130 - 2020035 + | squalene/phytoene synthase TERM 1854 2020807 - 2020788 - g 70 -13.6 -3.05596 | opp_overlap 2020788 2020787 CACCTCTTGATCGAA CGCGGCTT CGAG AAGCCGCG ATTTCCGGTCAAGCT RPE_1812 2020032 - 2020871 + | squalene/phytoene synthase RPE_1813 2020871 - 2022124 + | amine oxidase TERM 1855 2022103 - 2022124 + TF 76 -5.7 -4.56597 | overlap 2022104 2022106 GGCGGCCGACCTCGT GCTGGCCCT GGGC AGGGCCTGA TTTTTCCGCGCGGGC TERM 1856 2022370 - 2022403 + GT 73 -11 -3.56325 | gap 1, opp_overlap 2022370 2022371, overlap 2022371 2022400 CAGGCGGGGGCCAAA GCGGCCGCGGG-CAA TTGTT TTGATCCGCGGCCGG TTCTGATTGTGACCG TERM 1857 2022371 - 2022402 + GT 75 -14.5 -2.73474 | gap 1, opp_overlap 2022371 2022370, overlap 2022370 2022400 AGGCGGGGGCCAAAG CGGCCGCGGG-CAA TTGTT TTGATCCGCGGCCG GTTCTGATTGTGACC RPE_1815 2024169 - 2023021 - | radical SAM domain-containing protein RPE_1814 2022346 - 2023080 + | hypothetical protein ispH 2025165 - 2024221 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 1858 2025247 - 2025203 - H 81 -4.5 -5.0133 | gap 3, opp_overlap 2025217, overlap 2025206 2025211 2025214 2025219 CAGGTTGGCAAAAAA CAAGGCAAGCACCATACCACGG TACG CC-TGGTATGA--CTTGCCGTG GACATATAGGGTTCC TERM 1859 2025244 - 2025206 - H 74 -4.8 -4.61482 | gap 3, opp_overlap 2025217, overlap 2025203 2025211 2025214 2025219 GTTGGCAAAAAACAA GGCAAGCACCATACCACGG TACG CC-TGGTATGA--CTTGCC GTGGACATATAGGGT RPE_1817 2025465 - 2028053 + | hypothetical protein RPE_1818 2028605 - 2028021 - | hypothetical protein TERM 1860 2028299 - 2028267 - G 81 -5.3 -4.82901 | opp_overlap 2028293, overlap 2028269 GCCGCCGCACAAAAA GCCCAGCACGCAGCC CTC GATGGCGAGCTGGTC GGGGCCGAGCAGCTT TERM 1861 2029489 - 2029503 + G 100 -12.8 -4.38712 | GATTCAGACCGGCAT CGGCCG CAC CGGCCG TTTTCTCGCGATCGA RPE_1819 2028758 - 2030149 + | aminotransferase class-III TERM 1862 2030183 - 2030156 - T 73 -11.2 -3.64703 | TCGGCCTGAGTGAAA TCGGGTTGCGCG TTGC CGCGCACCGCGA TGGACCATCGACGAA TERM 1863 2030225 - 2030243 + T 72 -8 -4.11216 | opp_overlap 2030211, overlap 2030227 2030228 2030230 ATGCCGAAGGCGTTG GTTCGGCC GTC GGCCGGTC TTTTCCGGCTGCCGG TERM 1864 2030230 - 2030259 + T 75 -14.2 -2.7728 | opp_overlap 2030211, overlap 2030228 2030227 2030225 GAAGGCGTTGGTTCG GCCGTCGGCCGG TCTTTT CCGGCTGCCGGC TGCTTGGGCTTTGCC RPE_1820 2032218 - 2030599 - | glucose-methanol-choline oxidoreductase TERM 1865 2031638 - 2031607 - G 74 -5.7 -4.56597 | gap 1, opp_overlap 2031609 2031610, overlap 2031579 2031608 2031609 CGCCGGCTTCAAAAA CCCGCGCGCCGACG ACCAG CGCCGGC-CGCGCT TCTGGTTGACGTGGA TERM 1866 2032702 - 2032681 - g 70 -10.9 -3.62046 | gap 1 TTACGCCTCGAAGAA GCATGGCGTG ATG CACGCC-TGC GGCCATGACGGCCAC RPE_1821 2032382 - 2033554 + | peptidase M20D, amidohydrolase TERM 1867 2033963 - 2033941 - g 73 -11.2 -3.71998 | overlap 2033942 CATGGAGGAATACAA GGGCGCCGAG GCG CTCGACGCCG GCATGCTCGCCGCGG TERM 1868 2033962 - 2033942 - g 73 -14.7 -2.82717 | overlap 2033941 ATGGAGGAATACAAG GGCGCCGAG GCG CTCGACGCC GGCATGCTCGCCGCG RPE_1822 2033660 - 2034157 + | hypothetical protein TERM 1869 2034185 - 2034202 + T 74 -12.7 -3.28708 | TCTGCAATCTGAGCG GAGCCGC GCTT GCGGCTC TTGCTCTGCGCTTTC TERM 1870 2034495 - 2034452 - T 74 -14.6 -2.55544 | opp_overlap 2034451 2034456 2034467, overlap 2034448 2034456 2034467 CGAGGAGCGAAGCGA CGAAGCAATCCAGAATCCCG TGCT CGGCGCACTGGATTGCTTCG CTTCGCTCGCAATGA RPE_1823 2036048 - 2034606 - | phage SPO1 DNA polymerase-related protein TERM 1871 2035249 - 2035290 + g 81 -12.3 -3.79906 | gap 1, overlap 2035288 TGCTCCCGACGCTGC TGGGACGATCGCGG-ATCGC GCG GCGCTTCCGCGATCATCGCA TTCTTGTCGCGCTCG TERM 1872 2035307 - 2035347 + g 73 -11.3 -3.69373 | gap 2, opp_overlap 2035319 2035334, overlap 2035288 2035340 TCTTGTCGCGCTCGG CCTGCGCGATAAGCGGCTT GATCA AAGCCGC-T-TCGGGCAGG TTCTTCCAGTATTTC TERM 1873 2035885 - 2035854 - G 72 -13.1 -3.15544 | opp_overlap 2035878, overlap 2035873 2035874 CGCCAGCTCGACGAA CGCCG-CCGGCACGT TGAA AC-TGCCGGGCGGCG GCGCGCTCGCCCTTT TERM 1874 2035878 - 2035897 + g 72 -11.4 -3.58522 | gap 1, opp_overlap 2035854 2035873 2035874 CACGTTGAAACTGCC GGGCG-GCG GCG CGCTCGCCC TTTCGGCCTGCTGGT TERM 1875 2036074 - 2036127 + r 78 -14.8 -3.09635 | gap 3, opp_overlap 2036084 2036088, overlap 2036080 2036088 TCCCCGTCATTGCGA GCGAAGCGAAGCAATCCAGG-GCCACG CAC CGTGACGCCTGGATTGCGTCG--TCGC TTCGCTCCTCGCAAT TERM 1876 2036080 - 2036123 + r 87 -19 -2.55544 | gap 1, opp_overlap 2036084 2036088, overlap 2036074 2036088 TCATTGCGAGCGAAG CGAAGCAATCCAGG-GCCACG CAC CGTGACGCCTGGATTGCGTCG TCGCTTCGCTCCTCG TERM 1877 2036119 - 2036084 - R 93 -19.2 -3.19192 | gap 1, opp_overlap 2036080 2036074 2036088, overlap 2036088 TGCGAGCGAAGCGAA GCAATCCAGG-GCCACG CAC CGTGACGCCTGGATTGC GTCGTCGCTTCGCTC TERM 1878 2036115 - 2036088 - R 76 -12.8 -3.40788 | gap 1, opp_overlap 2036088 2036080 2036074, overlap 2036084 AGCGAAGCGAAGCAA TCCAGG-GCCACG CAC CGTGACGCCTGGA TTGCGTCGTCGCTTC RPE_1824 2037388 - 2036150 - | radical SAM domain-containing protein TERM 1879 2037463 - 2037473 + H 78 -6.8 -4.63932 | CCGATTGACTCCGCA CCCT GCT AGGG TTTTATTAGAACATA TERM 1880 2037715 - 2037745 + G 74 -14.6 -2.96695 | overlap 2037712 CGCTGCACGAGGTGT TTGGCGACGGCCGT CAG GCGGCCGCCGCCAC TGGTTTCGTCGCAGG RPE_1825 2037555 - 2038337 + | hypothetical protein TERM 1881 2038375 - 2038323 - f 71 -12.6 -3.06183 | overlap 2038303 CTCACCGCCATCGAA CG-GCTCGCCGGCTGAGGCGGCGCGG CCC CCGCGCGTCGTC-GCCGCCAAGCGCG ACAACGCGCTGGTGG TERM 1882 2039479 - 2039526 + G 70 -11.1 -3.61398 | gap 1, overlap 2039480 CCGGATAGCGGCGAC GCGCCATGGCCGCCGC-GCGCC GACGA GCCGCCGCTGCGGCCGTTGCGG TTGTTGCAGACGCCG TERM 1883 2039480 - 2039525 + G 72 -14.6 -2.76696 | gap 1, overlap 2039479 CGGATAGCGGCGACG CGCCATGGCCGCCGC-GCGCC GACGA GCCGCCGCTGCGGCCGTTGCG GTTGTTGCAGACGCC RPE_1826 2038387 - 2039823 + | hypothetical protein TERM 1884 2042651 - 2042681 + G 71 -13.8 -2.86271 | opp_overlap 2042648, overlap 2042649 TCGCTGGAGCAATTC GCCCGCGCCACGGC ATT GCCGAAGCGCGCGC TGATTCTGCTGGCGG TERM 1885 2043184 - 2043168 - g 70 -2.2 -4.65895 | overlap 2043169 GGGTCGAGGGAAAAA TCCAGG CCAGC CCCGAA GGCGTGGTGCATCTG TERM 1886 2043347 - 2043381 + G 88 -9.8 -4.4078 | opp_overlap 2043340, overlap 2043348 CAACAAATCCGCCAC CCCCGCAACGTCCGCA TCC TGCCGCCGTCGCGGGA TTTTCATTGAGGAAA TERM 1887 2043348 - 2043380 + G 73 -13.3 -3.24146 | opp_overlap 2043340, overlap 2043347 AACAAATCCGCCACC CCCGCAACGTCCGCA TCC TGCCGCCGTCGCGGG ATTTTCATTGAGGAA dnaE2 2039930 - 2043391 + | error-prone DNA polymerase RPE_1828 2043885 - 2043421 - | GCN5-related N-acetyltransferase RPE_1829 2044084 - 2044926 + | PDZ/DHR/GLGF RPE_1830 2045306 - 2045019 - | CopG/Arc/MetJ family transcriptional regulator RPE_1831 2045886 - 2045344 - | hypothetical protein RPE_1832 2046409 - 2045879 - | hypothetical protein TERM 1888 2046337 - 2046357 + g 71 -12.5 -3.26444 | opp_overlap 2046323, overlap 2046335 2046339 AGGGCGTCTGATCTT CAGCGGCCG CCT CGGCCGCTA TCTCTTGTTGACGCC TERM 1889 2046339 - 2046355 + g 76 -15.1 -3.19509 | opp_overlap 2046323, overlap 2046337 2046335 GGCGTCTGATCTTCA GCGGCCG CCT CGGCCGC TATCTCTTGTTGACG TERM 1890 2047103 - 2047124 + G 80 -9.5 -4.2558 | gap 1, overlap 2047087 2047089 GTGCGGCGCGCCGCC GCCCCTC-AT TTG ATCGAGGGGC TTTTGGTCAGAACTC RPE_1833 2046911 - 2047327 + | hypothetical protein RPE_1834 2049771 - 2047420 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) RPE_1835 2050069 - 2050395 + | hypothetical protein RPE_1836 2051303 - 2050524 - | enoyl-CoA hydratase/isomerase TERM 1891 2051112 - 2051124 + g 70 -6.2 -4.18494 | CTTGATATCGGCGCC GGCG GCGAA CGCC TTTTCGCTGCCGGTC RPE_1837 2052068 - 2051409 - | hypothetical protein TERM 1892 2051758 - 2051783 + g 83 -14.7 -3.66178 | overlap 2051738 2051737 GCGAGGGGGGCAGGC TCGACCAGCGG TTTG CCGCTGGCCGA TTTCGGCTTGGCCAC TERM 1893 2051921 - 2051945 + g 71 -3.4 -4.65895 | overlap 2051923 GCTTCGCCGTTTTCT TTGCCGGCTG CGGCT TGGCCGGCTG TTTTTCGCTCGCCGC TERM 1894 2051923 - 2051943 + g 70 -8.2 -3.94812 | overlap 2051921 TTCGCCGTTTTCTTT GCCGGCTG CGGCT TGGCCGGC TGTTTTTCGCTCGCC RPE_1838 2053362 - 2052226 - | hypothetical protein RPE_1839 2054459 - 2053359 - | diguanylate cyclase RPE_1840 2054890 - 2055456 + | RNA polymerase sigma factor TERM 1895 2055494 - 2055475 - g 79 -5 -4.75219 | CAACGAGCAAGAAAA TCCAGG AGCAAGAA CCTGGA GCGATTGAAGCGCTG TERM 1896 2056033 - 2056061 + G 78 -13.8 -3.53811 | CCCGCAGTCTCGCTC CCGAACCGGCGC CGCGC GCGCTGGTGCGG TTTACGCCCGATGCC RPE_1841 2055453 - 2056256 + | hypothetical protein TERM 1897 2056284 - 2056306 + F 72 -14.1 -2.75074 | overlap 2056282 TCGAATTTGCTTGCC CGGCTCGCG CCTGA CGCGGGCCG TCGTCTTGAAATCCC TERM 1898 2056583 - 2056525 - f 71 -13.1 -3.07816 | gap 1, opp_overlap 2056540 2056577 2056578 CGCCCATCCACCCAA GCGCCAATATGGCTTGACCCGCCCGG CTGTCCCC CCGGGCGGGTCTTTC-ATTTCGGCGC CCGACGCCGCCCGCC TERM 1899 2056540 - 2056569 + F 100 -17.9 -4.05788 | opp_overlap 2056525 GCGCCAATATGGCTT GACCCGCCCGG CTGTCCCC CCGGGCGGGTC TTTCATTTCGGCGCC RPE_1842 2056749 - 2057219 + | hypothetical protein RPE_1843 2058593 - 2057229 - | hypothetical protein TERM 1900 2057287 - 2057268 - G 82 -11.4 -4.10161 | gap 1, overlap 2057222 CACCACCTGGGAAAA CCG-CGCCG CGC CGGCGGCGG TGAGATCCGGCGTCA TERM 1901 2058555 - 2058537 - G 89 -17.4 -3.61398 | TTCGCTGGGTAACAA CGCCGCGG CGC CCGCGGCG GCGGCGCCTCGCAAC RPE_1844 2058958 - 2058713 - | hypothetical protein TERM 1902 2058844 - 2058820 - G 71 -12.7 -3.28791 | opp_overlap 2058821, overlap 2058821 AGCCGGCGTCGAGAA TGCGGCGCGGC GTC GGCGCGCCGCC CTGCGGCTCGACGTC TERM 1903 2058843 - 2058821 - G 77 -16.2 -2.57132 | opp_overlap 2058821, overlap 2058820 GCCGGCGTCGAGAAT GCGGCGCGGC GTC GGCGCGCCGC CCTGCGGCTCGACGT TERM 1904 2059007 - 2059018 + r 77 -2.2 -5.03405 | overlap 2058988 GCCGTCGGTTTCAGC TTCG GTTC CGGA TTTTTGTGTCGTCTT RPE_1845 2059692 - 2059033 - | peptidase C15, pyroglutamyl peptidase I RPE_1846 2060675 - 2059689 - | arginine/ornithine transport system ATPase TERM 1905 2059955 - 2059927 - G 90 -15.4 -3.85817 | gap 1 ACCTTGCCCCACAAA TCGGCGATG-CCG GCGC CGGTCATCGCCGA ATAGGTCACCACCGG TERM 1906 2060200 - 2060164 - G 72 -4.4 -4.55697 | gap 1, opp_overlap 2060173, overlap 2060165 AGGGCCAGAAAGAAA TCGGTCATGTCGCAGAC CGCG GTTTCCGAC-TGGCCGA TGCCGACGGTCTCCA RPE_1847 2061457 - 2060672 - | hypothetical protein TERM 1907 2060809 - 2060780 - G 73 -14.9 -2.92157 | overlap 2060771 CACGAAGGCGACATA GCCGCCCTCGGCG TGGA CGCCGAGCGCGGT CGCCGCGAAGTGGAA TERM 1908 2061006 - 2061018 + g 77 -10.5 -3.90112 | AATTTCAGGGTCGGG CCGCC GTT GGCGG TTTCCTTGAAGAACG RPE_1848 2061849 - 2061505 - | hypothetical protein RPE_1849 2062168 - 2061851 - | DNA polymerase beta subunit TERM 1909 2061993 - 2061982 - G 75 -7.2 -4.35581 | overlap 2061976 TGAAAAGATCGAAAA GCGG TTCG CCGC TGACATAAGGCGCGT RPE_1850 2063157 - 2062627 - | hypothetical protein RPE_1851 2063562 - 2063287 - | prevent-host-death family protein RPE_1852 2065723 - 2063567 - | methylmalonyl-CoA mutase TERM 1910 2065674 - 2065627 - G 70 -6.6 -4.25104 | overlap 2065628 CCGGCTTGACCAAAA TGCCTTCCGGCGTCAGCCACGG CTCA CCGCGGACGTCGGCGGCGGGCC CGGTCGCGCGGGCGA TERM 1911 2065798 - 2065823 + r 76 -8.2 -4.14739 | AGTCGTGGTCGGGAT GCTGGCGGCT CTCGAT GGCCGCGAGC TTTTCCGCTCCGTAG RPE_1853 2066245 - 2065781 - | glutathione-dependent formaldehyde-activating, GFA TERM 1912 2065855 - 2065893 + g 71 -14.5 -2.55015 | gap 1, overlap 2065852 TCTGTAGCGTGGTCT TGCTCGGCAGGG-CGGCG ATGG TGCCGACCCAGCCGAGCC TGGATTCAGTGCCGT RPE_1854 2068113 - 2066242 - | methylmalonyl-CoA mutase TERM 1913 2068175 - 2068159 - R 70 -7.9 -4.07687 | overlap 2068160 ATTGCGGGCGGAAAA TGCCACG TGG CGTGGCC TAAGCCAAACGGTTG RPE_1855 2068703 - 2068212 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1914 2068455 - 2068467 + g 73 -6.2 -4.30441 | TTCGTGGTCGCGGTC GCGG CCAAA CCGC TTTTCGATCTTGTGC RPE_1856 2069076 - 2068696 - | dihydroneopterin aldolase RPE_1857 2069930 - 2069073 - | dihydropteroate synthase TERM 1915 2069219 - 2069191 - G 74 -14.6 -3.05384 | gap 1, opp_overlap 2069174, overlap 2069177 2069176 2069174 TGCGCGGCGATCGAA CCGCC-GAGCCGC TGTT GCGGCTCCGACGG CGATACCGTGCTGAT RPE_1858 2070465 - 2070058 - | hypothetical protein RPE_1859 2070896 - 2070531 - | hypothetical protein RPE_1860 2071229 - 2072851 + | protein of unknown function DUF853, NPT hydrolase putative TERM 1916 2073318 - 2073288 - g 73 -9.7 -3.99324 | gap 1 GCGGAGGACGACAAA GGCCAGCTCTCGAC CTTC GTCGAG-GCCTGCC GAGCCTGGAAGGAAG TERM 1917 2073582 - 2073615 + G 73 -13.1 -3.29144 | gap 1, opp_overlap 2073593, overlap 2073583 GGCATCTATGGCGGC GGCGCG-CAGAACCCG ATC CGGGTGCTGACGCGCA TTCTCGGCGGCCTGC TERM 1918 2073583 - 2073614 + G 77 -16.6 -2.57344 | gap 1, opp_overlap 2073593, overlap 2073582 GCATCTATGGCGGCG GCGCG-CAGAACCCG ATC CGGGTGCTGACGCGC ATTCTCGGCGGCCTG RPE_1861 2072892 - 2074295 + | hypothetical protein RPE_1862 2076412 - 2074418 - | methyl-accepting chemotaxis sensory transducer TERM 1919 2074847 - 2074824 - G 74 -12.4 -3.58343 | gap 1 GCGACGACCGCGAAA CCGCGGCCGGC ATC ACCGG-CGCGG GCTGCCTCGATGGTA TERM 1920 2076720 - 2076699 - R 100 -15.1 -5.1287 | opp_overlap 2076697 2076693 2076716, overlap 2076710 TCCACACGCAAAAAA CGCCGCCCA AATA CGGGCGGCG TATCCATTCTCGGCG RPE_1863 2078144 - 2076741 - | methyl-accepting chemotaxis sensory transducer TERM 1921 2077513 - 2077489 - G 75 -9.1 -4.15565 | GCGACCACGGCAAAA CCCTTACCGGC CTC GCCGGCGCGGG CGGCCTCGATGGTGG TERM 1922 2078345 - 2078320 - R 100 -16.2 -4.1822 | opp_overlap 2078320 2078322 CGTCACTCGAACAAA TACGCCGCCC GGAATT GGGCGGCGTA TGTATTCCGACGTGC TERM 1923 2078320 - 2078345 + r 88 -16.9 -3.07344 | opp_overlap 2078320, overlap 2078322 CGTCACTCGAACAAA TACGCCGCCCG GAAT TGGGCGGCGTA TGTATTCCGACGTGC TERM 1924 2078322 - 2078343 + r 81 -15.1 -3.09452 | opp_overlap 2078320, overlap 2078320 TCACTCGAACAAATA CGCCGCCCG GAAT TGGGCGGCG TATGTATTCCGACGT RPE_1864 2078593 - 2078453 - | hypothetical protein RPE_1865 2079501 - 2078647 - | Beta-lactamase TERM 1925 2078846 - 2078870 + g 91 -11.4 -4.19238 | CAGTCTGTTGGCAGG CCGGCGCGAA GGCGG TTGGCGCCGG TTTTGCAATTCACCA RPE_1866 2081214 - 2079565 - | hypothetical protein TERM 1926 2081538 - 2081551 + G 71 -9.5 -3.8917 | GACAATGCTGATGGT GGCCG GTAT CGGCC TTATTCTGATTGGCC TERM 1927 2081794 - 2081758 - g 70 -10.8 -3.53012 | gap 1, overlap 2081759 TTGGCCGTGCTGAAA CGCCCGGCGCCGCCCTC GGAC GAGG-CGAGGCCGGACA ATTCGGCCGGTGACG RPE_1867 2081521 - 2082471 + | hypothetical protein RPE_1868 2082682 - 2083098 + | MucR family transcriptional regulator TERM 1928 2083409 - 2083361 - g 72 -4.5 -4.46212 | CGGGCGATGACAAAA GCGCATCGACG-CACGGCC-CGGGC GAC GCCCGCGGGCTTGGCG-CGG-GCGC CCGGGGACGGGGCTG RPE_1869 2083352 - 2084008 + | hypothetical protein RPE_1870 2084447 - 2084013 - | Fe-S metabolism associated SufE RPE_1871 2085117 - 2084683 - | hypothetical protein TERM 1929 2085656 - 2085671 + G 75 -11.8 -3.66139 | GCTGTTCGGCGCGTT CGCCGC GTTG GCGGCG TTTCCGATCTATCTG TERM 1930 2086570 - 2086600 + G 70 -10.3 -3.72695 | gap 1, opp_overlap 2086545 2086546, overlap 2086571 AGCAGGCGCGCGCCG AGGCCGCGCG-CGC CGAC GCGTCGCGCAGCCG TTTCCTCGCCACCGT TERM 1931 2086571 - 2086599 + G 71 -13.8 -2.83403 | gap 1, opp_overlap 2086545 2086546, overlap 2086570 GCAGGCGCGCGCCGA GGCCGCGCG-CGC CGAC GCGTCGCGCAGCC GTTTCCTCGCCACCG TERM 1932 2086700 - 2086682 - g 76 -14.6 -3.1372 | overlap 2086680 GATCGTGCAGGAACA GGCGCTGA TGA TCAGCGCC GAGCGCCGCCGCGAA RPE_1872 2085534 - 2087381 + | multi-sensor signal transduction histidine kinase RPE_1873 2087374 - 2088042 + | peptidoglycan binding domain-containing protein RPE_1874 2088080 - 2088424 + | hypothetical protein RPE_1875 2089386 - 2088421 - | hypothetical protein TERM 1933 2088482 - 2088506 + g 71 -14.9 -2.53715 | overlap 2088481 GGACGCGCCGGCGAA GCCGCCGCGCC GCG GGCGCGCTGGC GTTCGTCGTCATACA TERM 1934 2089108 - 2089128 + g 77 -11.1 -3.86897 | opp_overlap 2089103, overlap 2089109 TGGCAACTGATCGGG ATCGGGCTG GCG CAGCCCGAG TTTGTAGGCGATCGG TERM 1935 2089109 - 2089127 + g 73 -14.6 -2.91924 | opp_overlap 2089103, overlap 2089108 GGCAACTGATCGGGA TCGGGCTG GCG CAGCCCGA GTTTGTAGGCGATCG TERM 1936 2089487 - 2089527 + r 74 -11.7 -3.41978 | gap 1, opp_overlap 2089479, overlap 2089490 TTGAAATGGTGGAGG CTTCGCCGCCGCGCGCGG CGTCGA CCGCGCG-GGCGGCATCG TTACTTCAGTTGTCC TERM 1937 2089490 - 2089524 + r 83 -16.4 -2.85784 | gap 1, opp_overlap 2089479, overlap 2089487 AAATGGTGGAGGCTT CGCCGCCGCGCGCGG CGTCGA CCGCGCG-GGCGGCA TCGTTACTTCAGTTG RPE_1876 2089796 - 2089533 - | hypothetical protein RPE_1877 2090230 - 2091000 + | hypothetical protein TERM 1938 2091088 - 2091031 - T 74 -14.8 -2.52464 | gap 2 GTCTTCTTGAATCGA CG-GCGTCATTCCGGG-GCGGCCGCCGC GTCA GCGGCGGGCGAACCCGGAATATCGATCG GCTACGACAACATCC RPE_1878 2091760 - 2091197 - | hypothetical protein RPE_1879 2092335 - 2091757 - | hypothetical protein RPE_1880 2094628 - 2092370 - | 1A family penicillin-binding protein TERM 1939 2093480 - 2093512 + g 70 -13.3 -3.07113 | GACCATCGCGCGCAC GCCGCCGTCGAGATC GGA GACCACGGTGGCGGC TTGCGTCGCGTGATA RPE_1881 2094954 - 2095466 + | hypothetical protein RPE_1882 2095579 - 2095743 + | Flp/Fap pilin component TERM 1940 2097733 - 2097686 - g 73 -14.1 -3.10012 | AACGCCACCATCGAA GCGGCGCGGGC-CGGCGAAGCCG GCCG CGGCTTCGCCGTGGTCGC-CAGC GAAGTGAAGGCGCTG RPE_1883 2096435 - 2098120 + | methyl-accepting chemotaxis sensory transducer TERM 1941 2098146 - 2098182 + F 89 -16.6 -3.53012 | gap 1, opp_overlap 2098144 2098153 GACACCGTCGAAACG CGATAGACGGCCTGCCC CTTA GGGCAGGCCGTC-GCCG TTTGGGAAGCCCAAG TERM 1942 2098176 - 2098153 - f 93 -19.6 -2.9348 | opp_overlap 2098146, overlap 2098144 TCGAAACGCGATAGA CGGCCTGCCC CTTA GGGCAGGCCG TCGCCGTTTGGGAAG RPE_1884 2098542 - 2100296 + | methyl-accepting chemotaxis sensory transducer TERM 1943 2100315 - 2100350 + F 91 -16.2 -3.55444 | opp_overlap 2100320 2100321 2100335, overlap 2100316 2100321 CTTCGAGCTGAAGTC GGAAAGCGGCCCGTCA GCAA TGGCGGGCCGTTTTCG TTTGCGAGGTGACCG TERM 1944 2100316 - 2100349 + F 90 -19.7 -2.73124 | opp_overlap 2100320 2100321 2100335, overlap 2100315 2100321 TTCGAGCTGAAGTCG GAAAGCGGCCCGTCA GCAA TGGCGGGCCGTTTTC GTTTGCGAGGTGACC TERM 1945 2100345 - 2100320 - f 70 -10.3 -3.60971 | opp_overlap 2100316 2100315 2100321, overlap 2100321 2100335 AGCTGAAGTCGGAAA GCGGCCCGTCA GCAA TGGCGGGCCGT TTTCGTTTGCGAGGT TERM 1946 2100321 - 2100344 + F 100 -16 -4.54727 | opp_overlap 2100320 2100321 2100335, overlap 2100316 2100315 GCTGAAGTCGGAAAG CGGCCCGTCA GCAA TGGCGGGCCG TTTTCGTTTGCGAGG TERM 1947 2100344 - 2100321 - f 72 -13.8 -2.76261 | opp_overlap 2100321 2100316 2100315, overlap 2100320 2100335 GCTGAAGTCGGAAAG CGGCCCGTCA GCAA TGGCGGGCCG TTTTCGTTTGCGAGG RPE_1885 2100556 - 2102259 + | methyl-accepting chemotaxis sensory transducer RPE_1886 2102277 - 2102678 + | hypothetical protein TERM 1948 2102901 - 2102911 + F 73 -8.2 -4.08058 | opp_overlap 2102900, overlap 2102899 TGGCTAGGGCAAATG CCGC GGG GCGG TTTATAATGTTCGTT RPE_1887 2103027 - 2104064 + | AraC family transcriptional regulator TERM 1949 2104056 - 2104081 + T 81 -11.9 -3.86897 | TGGCAGGCCCGGGAC CCGACCTAGTA GTAT TACGAGGTCGG TTTGTCAGGCGTGCC RPE_1888 2104417 - 2104070 - | hypothetical protein TERM 1950 2104327 - 2104316 - G 72 -5.8 -4.4078 | overlap 2104317 CGGCGGCAAGCAAAA CTCC AATC GGAG TCGACTGTAGGCTTC RPE_1889 2104472 - 2106157 + | methyl-accepting chemotaxis sensory transducer TERM 1951 2106209 - 2106184 - f 93 -20.5 -2.89881 | overlap 2106167 GAGTGACCTGAGAGA CTGGCCTGCCC CCAA GGGCAGGCCAG CGACCGAAGCTCCCG RPE_1890 2106226 - 2106744 + | hypothetical protein RPE_1891 2107081 - 2107233 + | hypothetical protein TERM 1952 2107380 - 2107355 - g 82 -11.7 -4.14392 | overlap 2107369 CCGTAATCCGCAAAA CCTCGCCGGCG AAAG CGTCGGCGGGG CGATCAATCGTGCGC RPE_1892 2107336 - 2108199 + | hypothetical protein RPE_1893 2108192 - 2109463 + | hypothetical protein TERM 1953 2109552 - 2109494 - T 72 -12.3 -3.25442 | gap 2, opp_overlap 2109495, overlap 2109485 2109493 2109495 TGAAGAGAAAACAAG TCTTGTGTCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGACCCCGGT TGTCGCAGTAGCAAG TERM 1954 2109495 - 2109551 + T 84 -15.8 -3.31144 | gap 2, opp_overlap 2109485 2109493 2109495 2109494 GAAGAGAAAACAAGT CTTGTGTCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGACCCCGG TTGTCGCAGTAGCAA TERM 1955 2109551 - 2109495 - T 76 -15.8 -2.54181 | gap 2, opp_overlap 2109495, overlap 2109485 2109493 2109494 GAAGAGAAAACAAGT CTTGTGTCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGACCCCGG TTGTCGCAGTAGCAA TERM 1956 2109634 - 2109578 - T 75 -12.3 -3.58329 | gap 4, opp_overlap 2109580, overlap 2109574 2109575 2109579 GCAAGGAAGAAGTAA CCGGGGGCCCCGGATCTGCGCAGCGGCAC TGC GTGCCGCGGCGC-G-TCCGGGGAA-C-GG TGTTAGAGGTCCTTG TERM 1957 2109580 - 2109634 + T 71 -12.7 -3.05268 | gap 2, opp_overlap 2109574 2109575 2109578 2109579 AAGGAAGAAGTAACC GGGGGCCCCGGATCTGCGCAGCGGCAC TGC GTGCCGCGGCGC-G-TCCGGGGAACGG TGTTAGAGGTCCTTG RPE_1894 2109924 - 2109637 - | excinuclease ABC subunit C TERM 1958 2109977 - 2110034 + H 72 -12 -3.31144 | gap 3, opp_overlap 2109974 2109977 2109978, overlap 2109980 TGATCAGCAAATCAA TTGCGTGTCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGAC-CCCGG TTGTCGCAGTAGCAA TERM 1959 2110034 - 2109977 - H 70 -9.8 -3.58162 | gap 3, opp_overlap 2109977 2109980, overlap 2109974 2109978 TGATCAGCAAATCAA TTGCGTGTCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGACCC-CGG TTGTCGCAGTAGCAA TERM 1960 2109980 - 2110033 + H 74 -14.6 -2.58544 | gap 3, opp_overlap 2109974 2109978 2109977, overlap 2109977 TCAGCAAATCAATTG CGTG-TCCCGCA-C-GCGCCGCAGCGC GAA GCGGTGCGACGCAGATGCGGGACCCCG GTTGTCGCAGTAGCA TERM 1961 2110118 - 2110061 - H 100 -17 -3.58329 | gap 3, overlap 2110057 GCAAGGAAGAAGTAA CCG-GGGCCCCGGATCGGCGCAGCGGCAC TGC GTGCCGCGGCG-CG-TCCGGGGAACGCAG GAATTGCACTCTCTC TERM 1962 2110212 - 2110197 - g 71 -3.2 -4.65895 | gap 1, opp_overlap 2110199 2110209, overlap 2110198 2110199 CGCCCGAGCGAAAAA CGTCGCG CAC CGCG-CA ATTGCTGGCGTTTGA TERM 1963 2111297 - 2111275 - g 73 -6.1 -4.41494 | overlap 2111276 CACCGCCAATGAAAA GCGCGAGGC GGTCG GCTACGCGC CGCTCGAGGGCGGCG RPE_1895 2110151 - 2111326 + | HK97 family phage portal protein RPE_1896 2111512 - 2112234 + | type IV pilus assembly PilZ TERM 1964 2112294 - 2112311 + G 100 -9.8 -5.46698 | GAATGCCCGCATTGT CCCGCG CCGCGT CGCGGG TTTTTTCGTTTTGGA TERM 1965 2112514 - 2112552 + G 73 -13.1 -3.33696 | gap 2, opp_overlap 2112516 CCGCCGCTGCGACCA CAGC-CTCGGC-CGCCCGC CGC GCGGGCGCGGCGAGGGCAG TTAGTTGGCACGGCG TERM 1966 2112549 - 2112516 - g 72 -14.5 -2.78384 | gap 1, opp_overlap 2112514 GCCGCTGCGACCACA GCCTCGGC-CGCCCGC CGC GCGGGCGCGGCGAGGG CAGTTAGTTGGCACG RPE_1897 2112281 - 2112556 + | hypothetical protein TERM 1967 2112795 - 2112775 - f 79 -14.1 -3.45134 | opp_overlap 2112775 CGAAGCAATCCAGAA TCCAGTGCT CGG AGCACTGGA TTGCTTCGCTTCGCT TERM 1968 2112775 - 2112795 + F 79 -14.1 -3.40788 | opp_overlap 2112775 CGAAGCAATCCAGAA TCCAGTGCT CGG AGCACTGGA TTGCTTCGCTTCGCT TERM 1969 2112959 - 2112993 + F 81 -7.2 -4.48713 | gap 2, opp_overlap 2112935 2112936 2112958, overlap 2112960 ACCAACCTTATCAAC G-CGT-CATGGCCGGG CTCGT CCCGGCCATCCACGTC TTTGTTCTTGCTCGG TERM 1970 2112960 - 2112991 + F 79 -10.9 -3.8457 | gap 1, opp_overlap 2112958, overlap 2112959 CCAACCTTATCAACG CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGTTCTTGCTC RPE_1898 2113586 - 2114212 + | HK97 family phage prohead protease RPE_1900 2115040 - 2115495 + | hypothetical protein TERM 1971 2115503 - 2115531 + F 81 -15.2 -3.06796 | TCGGATAGTGACTCA CGCTCGCCCGCG TCGAT CGCGAGCGGGCG TTGGCTGGCGTGACG TERM 1972 2116012 - 2116051 + G 77 -5.7 -4.57569 | gap 2 TTCATCGCGCTGATG GCGACCTTGTGCGGGGCGA CCAG TTGCACCG-ACATGG-CGC TTTTTGCGCGGATGA RPE_1901 2115916 - 2117013 + | transposase, IS4 family protein RPE_1902 2117083 - 2117835 + | hypothetical protein TERM 1973 2118592 - 2118611 + T 75 -4.2 -4.72986 | overlap 2118593 ATCCTGAGGTAGCGG TCCGGC TGATGCTT GCCGGG TTTTTGCTCGGGATA TERM 1974 2119359 - 2119378 + T 79 -8.6 -4.35483 | gap 1 ATCCTTCGGCCAACC CGACCGGTG AAG CAC-GGTCG TTTCTTCTACTCCCG TERM 1975 2119678 - 2119694 + T 100 -5 -5.59357 | overlap 2119663 2119679 CGGCTGTGAACCTCA AGCGGC TCGCC GCCGCA TTTTTTTGCTGTCCT TERM 1976 2119679 - 2119693 + T 71 -8.5 -3.93988 | overlap 2119663 2119678 GGCTGTGAACCTCAA GCGGC TCGCC GCCGC ATTTTTTTGCTGTCC RPE_1906 2121134 - 2120748 - | hypothetical protein RPE_1907 2121414 - 2121683 + | hypothetical protein TERM 1977 2121863 - 2121885 + G 100 -16.2 -5.27938 | TTACTGACGACTATG CGCCGCTGCC TTT GGCTGCGGCG TTTTTGTTTGCGCCT RPE_1908 2121860 - 2123185 + | HK97 family phage major capsid protein RPE_1909 2123484 - 2123245 - | hypothetical protein RPE_1910 2123694 - 2124599 + | hypothetical protein RPE_1911 2124596 - 2124985 + | hypothetical protein RPE_1912 2125360 - 2125079 - | hypothetical protein RPE_1913 2126357 - 2125599 - | peptidase S1 and S6, chymotrypsin/Hap TERM 1978 2125685 - 2125701 + g 70 -10.8 -3.61715 | opp_overlap 2125658, overlap 2125683 2125694 TCACCCCGGTGAGGC CGCCGC AACCG GCGGCG TTGTTGGGCGCGGTC TERM 1979 2125769 - 2125815 + g 89 -10.6 -4.18018 | CCTGCTGCTGCACCA CCGGCGCGCCGGAATCGCCG GTGCAGG CGCCGAGCCCGGCACGCAGG TTTTGCGTCGCCGGG TERM 1980 2126691 - 2126707 + G 74 -5.7 -4.46212 | overlap 2126688 GCCGGCGTCGCGCAG CCGGTCG ATC CGGCGGG TTTTGTGCTCGACAC RPE_1914 2126409 - 2126972 + | bacteriophage protein RPE_1915 2126969 - 2127289 + | phage head-tail adaptor, putative TERM 1981 2127391 - 2127442 + G 85 -15.9 -3.6682 | gap 3, opp_overlap 2127381 2127425 2127426 TGACAGCGCGCTGAT CGCCGCGCTCG-GCGGCGCGCATGTC CAT GACGAAC-CGCCGCGCGAGC-CGGCG TTTCCCTACGTCACG RPE_1916 2127323 - 2127733 + | gene transfer agent (GTA) orfg8 RPE_1917 2127747 - 2128154 + | TP901-1 family phage major tail protein RPE_1918 2128165 - 2128485 + | gene transfer agent (GTA) like protein RPE_1919 2128482 - 2128709 + | hypothetical protein RPE_1920 2128706 - 2129287 + | gene transfer agent (GTA) like protein TERM 1982 2129371 - 2129328 - f 77 -15.4 -2.57985 | gap 1, opp_overlap 2129327 2129332 2129344, overlap 2129319 2129324 2129336 CGAGAAGCGAAGCGA CGAAGCAATCCAGAAGTCCCG GTG CGCGGCC-CTGGATTGCTTCG CTTCGCTCGCAATGA RPE_1921 2129456 - 2130088 + | hypothetical protein TERM 1983 2130807 - 2130770 - g 75 -13.4 -3.43338 | gap 1 ATCGAGATCAAGCAA CACCGCGTC-GCGGCGG GCGGG CCGCGGCTGACGCTGTG GCAGGCGATGGCCGA RPE_1922 2130116 - 2131018 + | bacteriophage protein TERM 1984 2131474 - 2131494 + G 76 -6 -4.54727 | ATCACGCCGTGGTGG CGCCGGCG GCTGG TGCAGGCG TTTTCGTTTCCGGGA RPE_1923 2131075 - 2131518 + | NlpC/P60 family phage cell wall peptidase RPE_1924 2131518 - 2135372 + | gene transfer agent (GTA) orfg15 TERM 1985 2135881 - 2135830 - g 100 -21.6 -3.27525 | gap 1, opp_overlap 2135836 2135837, overlap 2135825 CGCGGCCAAATCCAA CGCAGCGCTGTTCGCCGCCATCGAC GTC GCCGATGGCGGC-AGCGGCGATGCG CGGGTGCAGATTTCG RPE_1925 2135414 - 2137366 + | hypothetical protein RPE_1926 2137430 - 2138227 + | putative glycohydrolase TERM 1986 2138288 - 2138324 + G 70 -11.3 -3.61715 | GCCGATGCTCGGCAC CGCGCTCGGCGGTCCGC TGG GCGGCGCGGCGGGCGGG TTGTTGGCGCAGGTG RPE_1927 2138256 - 2138801 + | hypothetical protein TERM 1987 2138852 - 2138888 + F 78 -14.5 -3.03124 | CGGGGTCGCCTCATC TGCGCGACGTCGATC GCATCAA GATTGTCGTCGCGCA TATTGCGGAGTGGGG RPE_1928 2138906 - 2139601 + | two component transcriptional regulator TERM 1988 2140102 - 2140047 - g 95 -20.4 -2.73364 | gap 1, opp_overlap 2140064 CTCCCATCTCAAGGA CCGGGGCGTCGAACTCAGCGCTGCCGG CGT CCGGCAGGGCTATGT-CGACGGGCCGG AGGGCCAGAATCTGC TERM 1989 2140064 - 2140086 + G 73 -14.8 -2.87132 | opp_overlap 2140047 GGGGCGTCGAACTCA GCGCTGCCGG CGT CCGGCAGGGC TATGTCGACGGGCCG TERM 1990 2140722 - 2140688 - g 75 -4.9 -4.63527 | gap 1, opp_overlap 2140688, overlap 2140689 GGACCATGGCAAAAA TTCACCG-CGACCGCG GCCT CGCCATCGACGGCGAG GTCGACCCCGTGGCC RPE_1929 2139712 - 2141082 + | periplasmic sensor signal transduction histidine kinase RPE_1930 2141171 - 2141641 + | LipA a lipoprotein TERM 1991 2142684 - 2142651 - g 71 -12.3 -3.30443 | opp_overlap 2142670 TGACGACGAGATCAA GGTCGCCGCCACGCC CTAC GGCGTCGCCGTGACC ATGGCGCTGCATGAT TERM 1992 2143260 - 2143248 - g 75 -9.1 -4.07687 | ACGCGCCGCCGAAAA CGCCA TGG TGGCG GTGGAACGCAAGTCG RPE_1931 2141857 - 2143290 + | hypothetical protein RPE_1932 2143424 - 2144530 + | tetratricopeptide TPR_2 RPE_1933 2144618 - 2145121 + | cytochrome c-type biogenesis protein CcmE TERM 1993 2145378 - 2145354 - g 75 -14.3 -3.31144 | CTCGCATTCCCAGAA GCCGCTGCTCT ACA AGATCAGCGGC GTGTGGGGCAACCAT TERM 1994 2146200 - 2146212 + G 71 -9.1 -3.86015 | overlap 2146156 GTTCCTCACCACCGC CACCG CCA CGGTG TTTATCGGCACGCTC TERM 1995 2146911 - 2146954 + G 71 -9.5 -3.86194 | overlap 2146953 CAGCCAGCTCTACAT CTCGCTCGGTGA-GCCGACCG CCGA CGG-CGGCATCGCGGTGCGGG TTTATCACAAGCCTT RPE_1934 2145118 - 2147100 + | cytochrome c-type biogenesis protein CcmF RPE_1935 2147102 - 2147602 + | cytochrome C biogenesis protein RPE_1936 2148903 - 2147668 - | cobalamin synthesis protein, P47K TERM 1996 2148679 - 2148697 + g 79 -6.7 -4.63218 | GCAGCAGATGCAGCC GTTGGTC AGCTC GACCAGC TTTTCTTCGGACCGA RPE_1937 2149675 - 2149187 - | hypothetical protein TERM 1997 2149791 - 2149754 - R 81 -11.9 -3.86897 | opp_overlap 2149748, overlap 2149756 2149759 TGCATCCTGCACAAA GATTAGCTGGAGCGCGG TCGA CCGCGCTCCAGCCCCTA CTCGAGTACTTGCGG TERM 1998 2149789 - 2149756 - R 83 -14.5 -3.5241 | opp_overlap 2149748, overlap 2149754 2149759 CATCCTGCACAAAGA TTAGCTGGAGCGCGG TCGA CCGCGCTCCAGCCCC TACTCGAGTACTTGC TERM 1999 2149786 - 2149759 - R 100 -22.8 -2.89797 | opp_overlap 2149748, overlap 2149756 2149754 CCTGCACAAAGATTA GCTGGAGCGCGG TCGA CCGCGCTCCAGC CCCTACTCGAGTACT RPE_1938 2150715 - 2149807 - | ferredoxin TERM 2000 2151011 - 2150997 - H 71 -11.4 -3.44051 | TCTTCAGGACCACAA GGTGCG CCC CGCACC GCCGAATTTCAGGTT TERM 2001 2152158 - 2152200 + G 72 -11.9 -3.53091 | gap 1, opp_overlap 2152170 CGCGGTGAATGGCGA GCCGGTGAAGGATGCGCGCG AGCT CGCCCGCA-CCATCGGCGGC TTTGCGCCGGGCAAT RPE_1939 2151043 - 2152629 + | protease Do TERM 2002 2152764 - 2152801 + F 100 -9.9 -4.71426 | gap 1, opp_overlap 2152742, overlap 2152764 2152766 TCCGTCGGAAGGTGC G-GCGGGCGGTGAGGT CCCCCCA GCTTCACCGCCCGTAC TTTTCTTGATCCGCG TERM 2003 2152766 - 2152798 + F 82 -14.9 -3.27725 | overlap 2152764 2152764 CGTCGGAAGGTGCGG CGGGCGGTGAGGT CCCCCCA GCTTCACCGCCCG TACTTTTCTTGATCC RPE_1940 2152893 - 2153570 + | two component transcriptional regulator TERM 2004 2154863 - 2154831 - g 70 -9.8 -3.71607 | gap 1, overlap 2154825 GCAATATCATCGAAA CGGTTTCG-GCGGCG TCGA CGCAGCTCGAAGCCG AGGCCAAGCGGCTGA RPE_1941 2153909 - 2155615 + | methyl-accepting chemotaxis sensory transducer TERM 2005 2155669 - 2155659 - T 73 -6.8 -4.25104 | opp_overlap 2155663 GCGCGGCCACGAAAA CCGA GCT TCGG GAGCTTTCGCCGGCA RPE_1942 2157061 - 2155685 - | diguanylate cyclase TERM 2006 2156240 - 2156261 + g 70 -2.1 -4.59773 | gap 1, overlap 2156222 ATCGCGCAGCTCCGC GGCCG-CTTC ATC GTCGTCGGCC TTTTTGGCGATCAGC RPE_1943 2157397 - 2158860 + | periplasmic sensor signal transduction histidine kinase TERM 2007 2160784 - 2160828 + G 77 -7.9 -4.36914 | gap 1 AATTCCTCGATCGGC TGCGCATGTTCGGCCAGGAA AGCCTG TTCCTGATCG-GCACGCGCA TTTTGTCCGGCACGG TERM 2008 2161190 - 2161226 + G 71 -14.4 -2.91322 | gap 1, overlap 2161187 CATGCGGCTGCGGCC GTCCGGCCGCGCCGGTC CGCT GGC-GTCGCGGCTGGAC TCCTTTGCCGAGTAT TERM 2009 2161722 - 2161739 + G 80 -9.1 -4.2828 | gap 1, overlap 2161722 CGCGTGCTGGTCCGC G-CCGGCG ACG CGCCGGAC TTTTCCTCGCTGGAA RPE_1944 2158857 - 2161823 + | glutamate-ammonia-ligase adenylyltransferase RPE_1945 2162492 - 2161857 - | hypothetical protein TERM 2010 2162339 - 2162322 - G 85 -10.5 -4.21439 | opp_overlap 2162321 2162330 GAATTTGAACAGAAA GCGCCCG CTGC CGAGCGC GTCATTGATATCCGG TERM 2011 2162406 - 2162379 - G 77 -10.4 -3.93256 | GAGAGTGGCAAACAA CAGCGTCGCCGC GATC GCCGCGCCGCCG GCGATGGCTGCCGCC RPE_1946 2163036 - 2162482 - | RNA polymerase sigma factor TERM 2012 2163008 - 2162963 - G 79 -8.3 -4.37092 | gap 1 ACCGCCGCCAGAAAA CGCCGATAGGCGCCGGCG TCTCCGGCCAT CGC-GGCGCGCATCGACG TCGCCCACTCGTCCT RPE_1947 2163350 - 2163658 + | hypothetical protein RPE_1948 2163703 - 2164623 + | hypothetical protein RPE_1949 2164613 - 2165416 + | hypothetical protein RPE_1950 2165413 - 2165937 + | DoxX family protein RPE_1951 2168259 - 2165944 - | multi-sensor signal transduction histidine kinase TERM 2013 2168037 - 2168066 + g 71 -14.3 -2.81642 | gap 1, overlap 2168034 2168034 CGAGGGCGGCGAGGT CGCGCGACATCGCG CTA CGCT-TGTCGCGCG TCTGATCGATGATCT TERM 2014 2168477 - 2168449 - R 76 -12.5 -3.45839 | gap 1 AGTCCGAAACAGGAA CGCCG-CGTCAC TTGATG GTGACGACGGCG CCGAAATCGCTCAAT RPE_1952 2169870 - 2168488 - | cation diffusion facilitator family transporter RPE_1953 2170919 - 2170134 - | fumarylacetoacetate (FAA) hydrolase RPE_1954 2172134 - 2171160 - | 2-dehydropantoate 2-reductase RPE_1955 2173715 - 2172204 - | hypothetical protein TERM 2015 2172773 - 2172799 + g 78 -13.7 -3.53444 | gap 1, opp_overlap 2172761 GCATTGGCAGCAGCG CCGCGGTGC-CG GCGG CGTGCGCCGCGG TTTCCGGCGCGATCA TERM 2016 2173833 - 2173876 + r 72 -11.6 -3.28712 | gap 1, opp_overlap 2173865, overlap 2173833 TGGTGCGCTGCAGAT CCGGGGCCCCGG-TTGTTCTC TCG GCCGCCAAACCGGGGTCCCGG TTCTGCGAAGCGGCA TERM 2017 2173923 - 2173865 - R 74 -12.4 -3.53012 | gap 2, opp_overlap 2173833 2173903 2173913, overlap 2173900 CTCTCGGCCGCCAAA CCGGGGTCCCGGTTCTGCGAAGCGGCAT GAAAA ATGCCGCATCGC-GT-CCGGGACACGAG GCTTCTCCCGTCATT TERM 2018 2173943 - 2173996 + r 93 -20 -3.09635 | gap 3, opp_overlap 2173923 2173948 2173953 2173957, overlap 2173949 2173953 2173957 2173963 CTCCCGTCATTGCGA GCGAAGCGAAGCAATCCAGA-GCCGCA CCA TGTGGCTTCTGGATTGCTTCG-T-CGC TTCGCTCCTCGCAAT TERM 2019 2173993 - 2173948 - R 90 -18.5 -3.06183 | gap 1, opp_overlap 2173943 2173949 2173953 2173957 2173963, overlap 2173923 2173953 2173957 GTCATTGCGAGCGAA GCGAAGCAATCCAG-AGCCGCA CCA TGTGGCTTCTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 2020 2173949 - 2173992 + r 100 -24.2 -2.55544 | gap 1, opp_overlap 2173923 2173948 2173953 2173957, overlap 2173943 2173953 2173957 2173963 TCATTGCGAGCGAAG CGAAGCAATCCAGA-GCCGCA CCA TGTGGCTTCTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 2021 2173953 - 2173988 + r 91 -17.8 -3.22388 | gap 1, opp_overlap 2173953 2173948 2173957, overlap 2173949 2173943 2173957 2173963 TGCGAGCGAAGCGAA GCAATCCAGA-GCCGCA CCA TGTGGCTTCTGGATTGC TTCGTCGCTTCGCTC TERM 2022 2173988 - 2173953 - R 83 -15.6 -3.19192 | gap 1, opp_overlap 2173949 2173943 2173953 2173957 2173963, overlap 2173948 2173957 TGCGAGCGAAGCGAA GCAATCCAG-AGCCGCA CCA TGTGGCTTCTGGATTGC TTCGTCGCTTCGCTC TERM 2023 2173957 - 2173984 + r 71 -11.4 -3.41581 | gap 1, opp_overlap 2173957 2173953 2173948, overlap 2173953 2173949 2173943 2173963 AGCGAAGCGAAGCAA TCCAGA-GCCGCA CCA TGTGGCTTCTGGA TTGCTTCGTCGCTTC RPE_1956 2174540 - 2174037 - | hypothetical protein TERM 2024 2174483 - 2174512 + g 79 -7.8 -4.44797 | gap 1, opp_overlap 2174441, overlap 2174508 GCACCGCCAGCACCG CCTCGACGC-CGC GATGG GTGGGCGCCGAGG TTTTCGTCTTGATCA RPE_1957 2175657 - 2174635 - | hypothetical protein TERM 2025 2174673 - 2174686 + g 70 -2.3 -4.64676 | overlap 2174664 CCGCTTCCTTCATCA GGGTC TCGT GACGC TTTTCTTCACCCTCG RPE_1958 2177295 - 2176018 - | formyl-coenzyme A transferase TERM 2026 2177349 - 2177399 + r 88 -17.2 -3.09635 | gap 3, opp_overlap 2177330 2177354 2177359 2177363, overlap 2177355 2177359 2177363 AATTCGTCATTGCGA GCGAAGCGAAGCAATCCAGCGCCGC GCCT GTGGCG-TGGATTGCTTCG-T-CGC TTCGCTCCTCGCAAT TERM 2027 2177396 - 2177354 - R 81 -15.7 -3.06183 | gap 1, opp_overlap 2177349 2177355 2177359 2177363, overlap 2177330 2177359 2177363 GTCATTGCGAGCGAA GCGAAGCAATCCAGCGCCGC GCCT GTGGCG-TGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 2028 2177355 - 2177395 + r 100 -21.4 -2.55544 | gap 1, opp_overlap 2177330 2177354 2177359 2177363, overlap 2177349 2177359 2177363 TCATTGCGAGCGAAG CGAAGCAATCCAGCGCCGC GCCT GTGGCG-TGGATTGCTTCG TCGCTTCGCTCCTCG TERM 2029 2177359 - 2177391 + r 80 -15 -3.22388 | gap 1, opp_overlap 2177354 2177359 2177363, overlap 2177355 2177349 2177363 TGCGAGCGAAGCGAA GCAATCCAGCGCCGC GCCT GTGGCG-TGGATTGC TTCGTCGCTTCGCTC TERM 2030 2177391 - 2177359 - R 73 -12.8 -3.19192 | gap 1, opp_overlap 2177359 2177355 2177349 2177363, overlap 2177354 2177363 TGCGAGCGAAGCGAA GCAATCCAGCGCCGC GCCT GTGGCG-TGGATTGC TTCGTCGCTTCGCTC RPE_1959 2178147 - 2177452 - | GntR family transcriptional regulator TERM 2031 2178631 - 2178606 - H 85 -10.3 -4.3129 | overlap 2178608 GACCGACTATGAAAA GGCTCGGCGGC ACCG GTCGCCGAGGC GCGCCATTGGCATTC RPE_1960 2178745 - 2180610 + | K+ potassium transporter TERM 2032 2180656 - 2180606 - T 70 -10.2 -3.57792 | opp_overlap 2180653, overlap 2180607 2180610 GCACCCAGCTGGAAA TCTAGCGGCGAGGGGGCTTGCGCC GCT GGCGTAAGGCCCCTCGCAATTCGC GTTCAGCGATTGAAT TERM 2033 2180655 - 2180607 - T 72 -13.7 -2.74461 | opp_overlap 2180653, overlap 2180606 2180610 CACCCAGCTGGAAAT CTAGCGGCGAGGGGGCTTGCGCC GCT GGCGTAAGGCCCCTCGCAATTCG CGTTCAGCGATTGAA TERM 2034 2180652 - 2180610 - T 71 -14 -2.64803 | overlap 2180607 2180606 CCAGCTGGAAATCTA GCGGCGAGGGGGCTTGCGCC GCT GGCGTAAGGCCCCTCGCAAT TCGCGTTCAGCGATT RPE_1961 2180931 - 2180659 - | hypothetical protein TERM 2035 2180981 - 2180970 - R 70 -7.2 -4.07885 | opp_overlap 2180976 2180979, overlap 2180971 TATTGCGGGCCAAAA CCGC GACG GCGG CCCCAGCCGGTGTTG RPE_1962 2181412 - 2180954 - | hypothetical protein RPE_1963 2181625 - 2181963 + | hypothetical protein RPE_1964 2181992 - 2182651 + | two component transcriptional regulator TERM 2036 2183431 - 2183411 - g 86 -9 -4.58395 | overlap 2183412 CGCACGCCTTAAAAA CGCCGATC GCGGT GATCGGCA ACGAGGCCGGCAAGA RPE_1965 2182648 - 2184009 + | periplasmic sensor signal transduction histidine kinase RPE_1966 2184191 - 2184006 - | hypothetical protein RPE_1967 2184661 - 2184957 + | histone family protein DNA-binding protein RPE_1968 2185913 - 2185110 - | cobalt ABC transporter, inner membrane subunit CbiQ RPE_1969 2186563 - 2185910 - | hypothetical protein RPE_1970 2187195 - 2186560 - | cobalt transport protein CbiM RPE_1971 2187988 - 2187209 - | ABC-type Co2+ transport system, periplasmic component RPE_1972 2188600 - 2188097 - | nickel responsive regulator RPE_1973 2188718 - 2189029 + | hypothetical protein RPE_1974 2189022 - 2189741 + | putative copper export protein-like protein RPE_1975 2190092 - 2189742 - | enoyl-CoA hydratase/carnithine racemase-like protein TERM 2037 2190350 - 2190370 + G 71 -12.5 -3.32022 | TGCCGCGTTTTTCAT CGCGTGCTG AGC CGGCGCGCG TTGCTCTATACCGAG RPE_1976 2190272 - 2191270 + | tRNA-dihydrouridine synthase A RPE_1977 2191793 - 2191281 - | hypothetical protein RPE_1978 2193482 - 2191845 - | periplasmic sensor signal transduction histidine kinase TERM 2038 2192458 - 2192482 + g 70 -8.5 -3.95852 | overlap 2192459 2192477 AGCTCGTAGCGTCCG GCCTCGATCCG CGA CAGATCGAGGA TTTCGTTGATCAGAT TERM 2039 2192937 - 2192892 - G 70 -6 -4.18494 | overlap 2192876 2192893 GACCGCGAGCGAAAA CGTCA-CCGGCGCGGTCGCGGC CAGG GCTGCGACCG-GCAGGCTGGCC GACAGCATGCTCGAC TERM 2040 2193350 - 2193401 + g 100 -19.3 -3.28924 | gap 1 GGTCACGCGCCTCGC GCACCCGCTGCGCCGCC-GCGCGC CGGTT GCGCGCCGGCGTCGCCACCGGTGC TTCTGCCGGAAGGTG RPE_1979 2194564 - 2193695 - | 3-hydroxyisobutyrate dehydrogenase TERM 2041 2194212 - 2194156 - G 72 -14.5 -2.69151 | gap 2, overlap 2194130 2194153 2194198 2194199 CGCCGCCACACATCA CCGTCAACGCGCCGTTCTCGGCGCCGG CCTGT CCG-C-CCGAAACCGGCGCGTCGATGA ACTGGAACCCCAGCT TERM 2042 2194404 - 2194432 + g 81 -8.7 -4.56597 | opp_overlap 2194384 2194383, overlap 2194414 2194417 CCCTCCGCCGCCGCC TTCGGCGTCGGCG CGG CGCGTCCGCCGAA TTTTTCGGCCCAGGC TERM 2043 2195087 - 2195046 - g 72 -13 -3.17392 | GACCGCCGAACGCAA GCCGGGTGCGACACCC-GCC GCGC GACCGGGCGTCGCGCC-GGC CAGCGCGCATCGGCC RPE_1980 2194753 - 2195919 + | MRP-like protein (ATP/GTP-binding protein) TERM 2044 2195970 - 2195986 + F 78 -10.1 -4.07568 | opp_overlap 2195970 2195981 GTGCATGATCGAAGA CGTCGCA AAA TGCGGCG TTTTCCGAAGCCGCG RPE_1981 2196113 - 2197201 + | twin-arginine translocation pathway signal TERM 2045 2197249 - 2197228 - T 100 -15.9 -4.20806 | opp_overlap 2197228 GACGTCAAAAGCAAA TACCCGGCC GTGA GGCCGGGTA TTTTTGTATCTCGAG TERM 2046 2197228 - 2197249 + T 100 -15.9 -5.03994 | opp_overlap 2197228 GACGTCAAAAGCAAA TACCCGGCC GTGA GGCCGGGTA TTTTTGTATCTCGAG RPE_1982 2199126 - 2197288 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 2047 2198009 - 2197995 - G 85 -10 -4.26076 | CCACGCCGATGAAAA TGGTGC CCA GCACCA GGAAGATCAGGCCGA TERM 2048 2198401 - 2198389 - G 70 -10.5 -3.73445 | overlap 2198387 2198390 GACCACGAAGAAATA CGCCG CAG CGGCG GCCGAGACCGCGGCG TERM 2049 2199156 - 2199115 - G 70 -8.7 -3.89822 | gap 1, opp_overlap 2199144 2199150 CATGTAGTGGATAAA CATCGCGGTCATTCCGTTCG CCC CTATCTGA-TGACCGCGACG CTCAGCGTTTGTCGC RPE_1983 2199787 - 2199158 - | tripartite ATP-independent periplasmic transporter DctQ moaA 2200946 - 2199915 - | molybdenum cofactor biosynthesis protein A TERM 2050 2200698 - 2200724 + g 74 -12.2 -3.53343 | CATGTTGCGCCGGAC CAGTGGCTCGCC GCC GGTGAGCCGCAG TTTGCGCACGCCCTT RPE_1985 2201496 - 2201047 - | hypothetical protein RPE_1986 2202333 - 2201647 - | phosphoglycolate phosphatase RPE_1987 2202492 - 2203217 + | ribose-5-phosphate isomerase A RPE_1988 2203214 - 2203735 + | hypothetical protein RPE_1989 2203760 - 2205145 + | glutathione reductase RPE_1990 2206052 - 2205153 - | hypothetical protein TERM 2051 2205832 - 2205807 - G 71 -14 -2.87132 | gap 1 CCGCGGCTGGAGATA GC-CGCGCCCG GCCGG CGGGCGCGAGC CGCCGGTGCCGCGAT TERM 2052 2206182 - 2206203 + H 75 -4.4 -4.7254 | gap 1, opp_overlap 2206174 TGTATAACCCGCCCG CCGCCGGGT GCCTA ACTCG-CGG TTTTTCCTCAGGAGT RPE_1991 2206225 - 2207613 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2053 2207705 - 2207732 + G 72 -5.4 -4.4078 | CGTGAGGAAGTCGTC GCGCTGGTGGTG GCCG TGCCGCTCGCGC TTTTGATTGGCGCCA RPE_1992 2207615 - 2207968 + | diacylglycerol kinase nadE 2208003 - 2209766 + | NAD synthetase RPE_1994 2210206 - 2209796 - | PilT domain-containing protein RPE_1995 2210466 - 2210203 - | SpoVT/AbrB domain-containing protein RPE_1996 2211733 - 2210591 - | hypothetical protein TERM 2054 2210669 - 2210723 + g 73 -11.1 -3.71848 | overlap 2210669 2210678 2210700 GGCGGTGGTGGTCAC GGCGGGCGCGCCGGTCGGCGTCGCC GCCGG GGCCGCGGCGGGTGGCGCGCTGCCC TTCTTGCTCGCCGGC TERM 2055 2210669 - 2210722 + g 71 -14.4 -2.82895 | gap 1, overlap 2210669 2210678 2210700 GGCGGTGGTGGTCAC GGCGGGCGCGCCGGTCGGCGTCGCC GCCGG GGCCGCGGCGGGTGGCGCGCT-GCC CTTCTTGCTCGCCGG TERM 2056 2211190 - 2211215 + g 72 -13.9 -3.01712 | opp_overlap 2211190 2211189 GATTGTCGAGGAAAT TGCCGCCGCCG CGCG CGGCTGCGGCG TATTGCGGGCCGCAA RPE_1997 2212194 - 2211826 - | hypothetical protein TERM 2057 2213109 - 2213081 - g 74 -8.1 -4.17089 | gap 1 TGGAAACCGTCAAAA CCGGGCGAACCG TCCTGG CCG-TCGCCCGG CGGCATTGCGGTTCA cysS 2212472 - 2213863 + | cysteinyl-tRNA synthetase RPE_1999 2213860 - 2214156 + | hypothetical protein RPE_2000 2214156 - 2214287 + | hypothetical protein RPE_2001 2214293 - 2214802 + | GCN5-related N-acetyltransferase RPE_2002 2214799 - 2216397 + | alpha-isopropylmalate/homocitrate synthase family transferase RPE_2003 2216410 - 2216784 + | glyoxalase/bleomycin resistance protein/dioxygenase RPE_2004 2216988 - 2218544 + | hypothetical protein RPE_2005 2218556 - 2219938 + | FAD linked oxidase domain-containing protein TERM 2058 2220167 - 2220118 - T 79 -9.2 -4.21194 | gap 3, opp_overlap 2220149 2220152, overlap 2220095 CTGCACGACCTAAAA CCGCTGTGCGATCTCCGGC-ACGCG CAC CGCGTCGTCGG-G-CCGCGCCGCGG CGGCCGCGCGCAGCG RPE_2006 2220738 - 2220112 - | hypothetical protein TERM 2059 2220866 - 2220912 + H 76 -5.9 -4.58685 | gap 2, overlap 2220871 2220876 ACAGCCCACCAACAT TCCGA--TGACGCGATGCGACCG AGC CGGTCGCGTCGTTTCGTTTTGGG TTTTTAGGCAGGTTT TERM 2060 2220871 - 2220905 + H 100 -15 -4.4874 | overlap 2220866 2220876 CCACCAACATTCCGA TGACGCGATGCGACCG AGC CGGTCGCGTCGTTTCG TTTTGGGTTTTTAGG TERM 2061 2220876 - 2220900 + H 100 -17.9 -4.24432 | overlap 2220871 2220866 AACATTCCGATGACG CGATGCGACCG AGC CGGTCGCGTCG TTTCGTTTTGGGTTT RPE_2007 2220933 - 2222903 + | ABC transporter related RPE_2008 2222951 - 2223649 + | phosphatidylserine decarboxylase RPE_2009 2223746 - 2224624 + | CDP-diacylglycerol--serine O-phosphatidyltransferase RPE_2010 2225019 - 2225792 + | MotA/TolQ/ExbB proton channel TERM 2062 2225893 - 2225906 + G 74 -2.3 -4.78107 | TCGCCGACCTGATGG CGCTG CTGC TGGCG TTTTTCGTGATGCTG RPE_2011 2225823 - 2226641 + | OmpA/MotB domain-containing protein TERM 2063 2227713 - 2227752 + G 95 -15 -4.21194 | gap 1 CCTGCTGGCGACCGC CGCCACCGTGATCGCCAGC CAG GC-GGTGATCACGGGCGCG TTTTCGCTGATCAGC TERM 2064 2228042 - 2228056 + G 79 -7.1 -4.63218 | TGATCATCCCCTTCG TGGCG GTCGA CGCCA TTTTCTTCAGCGCCA RPE_2012 2226805 - 2228697 + | K+ potassium transporter RPE_2013 2228826 - 2229179 + | rhodanese domain-containing protein RPE_2014 2229187 - 2230341 + | hypothetical protein RPE_2015 2230379 - 2231491 + | extracellular solute-binding protein RPE_2016 2231488 - 2232012 + | hypothetical protein RPE_2017 2232081 - 2232215 + | hypothetical protein TERM 2065 2232233 - 2232216 - T 79 -8.3 -4.33582 | overlap 2232213 2232218 GGCAAGAAGAAATAA CGGCGCG ACCG CGCGCAG GAACCATCTCGTCCG RPE_2018 2233229 - 2232297 - | lipid A biosynthesis lauroyl acyltransferase TERM 2066 2232590 - 2232615 + g 85 -13.3 -4.08216 | opp_overlap 2232585 2232582 TGGAAAACCACTGAT CGACCAGCATG CCGA CATGCTGGCCG TTTTGCAGCGCCTCC RPE_2019 2234251 - 2233229 - | alcohol dehydrogenase TERM 2067 2233511 - 2233556 + g 71 -9 -3.77553 | gap 2, opp_overlap 2233540, overlap 2233519 2233520 CAACAGCGAGCCGTT GAAGGTGTCGGCGCCGACGTGT TCGA ACACGACGTCGACG-C-CCTTC TTCTTGGTGATCTTC RPE_2020 2235565 - 2234285 - | 3-oxoacyl-(acyl carrier protein) synthase II RPE_2021 2236792 - 2235584 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2068 2236357 - 2236346 - G 70 -3.6 -4.57341 | opp_overlap 2236354 AAGCTGCGCCAAAAA CAGC GTCG GCCG CAGATCGTTCATCAG TERM 2069 2236575 - 2236589 + g 71 -2.7 -4.61231 | overlap 2236576 TGCCAGGCTTCCATC TGGCG CTGAT CGCCC TTTTTCGGAATCTGC RPE_2022 2237258 - 2236785 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ RPE_2023 2237550 - 2237269 - | acyl carrier protein RPE_2024 2238045 - 2237737 - | hypothetical protein RPE_2025 2238666 - 2238145 - | MgtC/SapB transporter RPE_2026 2239241 - 2238663 - | uncharacterized peroxidase-related enzyme TERM 2070 2239324 - 2239301 - R 70 -12.4 -3.19192 | opp_overlap 2239311 CTCCACCGAATGCAA GACGGCGCCA GCAG CGGCGCCATC GGCCAAGCCGATCAG TERM 2071 2239311 - 2239348 + r 76 -6.1 -4.56597 | gap 1, opp_overlap 2239301 TGCAAGACGGCGCCA GCAGCGGCGC-CATCGGC CAA GCCGATCAGCGCAACGGC TTTTTCAGCAGCGAG RPE_2027 2241087 - 2239336 - | hypothetical protein RPE_2028 2241467 - 2242399 + | SMP-30/gluconolaconase/LRE domain-containing protein TERM 2072 2242444 - 2242475 + F 79 -10.9 -3.85698 | gap 1, opp_overlap 2242432 GAACGCCATTTCTCG CGT-CATGGCCGGG CTTGT CCCGGCCATCCACG TTTGTGCCGCAAGGA RPE_2029 2242594 - 2243187 + | GCN5-related N-acetyltransferase RPE_2030 2243314 - 2243598 + | hypothetical protein RPE_2031 2244598 - 2243756 - | ATPase RPE_2032 2246719 - 2244794 - | diguanylate cyclase TERM 2073 2244896 - 2244927 + g 79 -10.8 -3.91084 | gap 1, opp_overlap 2244898, overlap 2244863 CCGCTTGGCCGCATA CAGCGCTTGGTCGGC TTC GCCGAGC-AGCGCGG TTTCGTTGCGGGTGG TERM 2074 2246195 - 2246173 - G 79 -6.9 -4.63218 | opp_overlap 2246173 2246193 TCGTGGCCAACAAAA TGCCGGCGA AGCTG CCGTCGGCA TTTTCCATGCGTTTG TERM 2075 2246173 - 2246195 + g 76 -8.4 -4.22346 | opp_overlap 2246173, overlap 2246193 TCGTGGCCAACAAAA TGCCGGCG AAGCTGC CGTCGGCA TTTTCCATGCGTTTG TERM 2076 2247018 - 2247045 + H 74 -9.8 -3.72576 | gap 1, opp_overlap 2247017 2247009 CGACAACGGAATATT GCGGCGAAGCGCG AAC CG-GTTCCGCCGC TTTGATCCCGCAGGG RPE_2033 2247110 - 2248285 + | hypothetical protein TERM 2077 2248429 - 2248382 - f 89 -14.8 -3.8822 | gap 1, opp_overlap 2248346, overlap 2248384 2248386 GAGATGAAAGGCAAA GAGATTCCGGGTTCGCCCGCAGC TTC GCTGCGTGCGC-CCCGGAATGAC GAACGAGTATTTATT TERM 2078 2248427 - 2248384 - f 89 -16 -3.51904 | gap 1, opp_overlap 2248346, overlap 2248382 2248386 GATGAAAGGCAAAGA GATTCCGGGTTCGCCCGCAGC TTC GCTGCGTGCGC-CCCGGAATG ACGAACGAGTATTTA TERM 2079 2248425 - 2248386 - f 93 -18.6 -3.32293 | gap 1, opp_overlap 2248346, overlap 2248384 2248382 TGAAAGGCAAAGAGA TTCCGGGTTCGCCCGCAGC TTC GCTGCGTGCGC-CCCGGAA TGACGAACGAGTATT RPE_2034 2248425 - 2248886 + | rhodanese domain-containing protein RPE_2035 2249000 - 2249857 + | 3-mercaptopyruvate sulfurtransferase RPE_2036 2250658 - 2249864 - | hypothetical protein TERM 2080 2249905 - 2249933 + g 79 -7.2 -4.60889 | opp_overlap 2249888, overlap 2249900 GCTGCGCGGCCGCAG GCGCTGGCTGTC GCACG GTCTGCCTGCGC TTTTTCACCATCCTT TERM 2081 2250905 - 2250881 - H 78 -3.5 -5.06451 | GATCACTCGAAAAAA TGCTCAAGTTC AGC GATTCTGAGCA AATTCGGCGCTATTG RPE_2037 2251003 - 2252277 + | ErfK/YbiS/YcfS/YnhG TERM 2082 2252306 - 2252285 - T 100 -18.7 -4.05788 | TCCGCTGAAACCAAA CGGCCGCGC AGAG GCGCGGCCG CATCCTAGTCGCTCA RPE_2038 2252534 - 2252331 - | hypothetical protein TERM 2083 2253273 - 2253246 - g 72 -5.5 -4.4009 | opp_overlap 2253271, overlap 2253247 2253248 GCCGACGTCACAAAA CTGTC-CGGCGGC GAGC GCCGCCGCGTC-G CGCTGTGCAAGCTTC RPE_2039 2252778 - 2254427 + | putative ABC transporter ATP-binding protein RPE_2040 2254658 - 2254443 - | hypothetical protein RPE_2041 2254974 - 2254717 - | AbrB family transcriptional regulator RPE_2042 2255303 - 2255046 - | hypothetical protein RPE_2043 2255589 - 2255290 - | hypothetical protein RPE_2044 2255688 - 2256458 + | trans-aconitate 2-methyltransferase TERM 2084 2256545 - 2256533 - f 74 -10.5 -3.69354 | opp_overlap 2256531 CGCTATAACTCCAAA GCGCG TTT CGCGC CGATTCTTCCCGCCC RPE_2045 2256575 - 2257165 + | hypothetical protein RPE_2046 2257225 - 2257425 + | hypothetical protein TERM 2085 2257671 - 2257654 - g 76 -8.3 -4.18018 | overlap 2257655 CCGGCCGACCGAAAA CCGGCGC GCCG GCGCAGG CCGAATTCGTCCAGG TERM 2086 2258291 - 2258277 - g 79 -7.8 -4.56597 | opp_overlap 2258281, overlap 2258281 GTGCGTGGCCAAAAA CTCAGC GCC GCCGAG CAGGCGCAGCCGGCC RPE_2047 2257422 - 2258666 + | lytic murein transglycosylase RPE_2048 2259493 - 2258675 - | phosphonate ABC transporter, inner membrane subunit RPE_2049 2260304 - 2259495 - | phosphonate ABC transporter, inner membrane subunit RPE_2050 2261143 - 2260304 - | phosphonate ABC transporter, ATPase subunit TERM 2087 2260706 - 2260649 - G 71 -12.5 -3.23216 | gap 1, opp_overlap 2260674, overlap 2260650 GTCGATCAGCAGCAA TTCCGG-ATCCTGCGCCAACGCCCGGGC GAT GCCGACGCGCTGGCGCTGGCCGCCGGAC AGCGCGTCGGCGCGC TERM 2088 2260705 - 2260650 - G 74 -16 -2.53715 | gap 1, opp_overlap 2260674, overlap 2260649 TCGATCAGCAGCAAT TCCGG-ATCCTGCGCCAACGCCCGGGC GAT GCCGACGCGCTGGCGCTGGCCGCCGGA CAGCGCGTCGGCGCG TERM 2089 2260674 - 2260721 + g 86 -17.1 -3.31792 | gap 3, opp_overlap 2260650 2260649 TGCGCCAACGCCCGG GCGATGCCGACGCGCTGGCGCTGG CCG CC-G-GACAGCGCGTCGGCG-CGC TTGTCGACCTGGTCG RPE_2051 2262230 - 2261235 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein TERM 2090 2262305 - 2262266 - R 76 -10.8 -3.72588 | gap 1, overlap 2262254 2262268 2262269 CAAGCGACACGGAAA CACCGCATCGAT-CCTGCA ATC CGCAGGCATCGACGCGATC AGCGCTATCATGGAC TERM 2091 2262303 - 2262268 - R 79 -13.4 -3.4404 | gap 1, overlap 2262254 2262266 2262269 AGCGACACGGAAACA CCGCATCGAT-CCTGCA ATC CGCAGGCATCGACGCGA TCAGCGCTATCATGG TERM 2092 2262302 - 2262269 - R 74 -14.7 -2.65942 | gap 1, overlap 2262254 2262268 2262266 GCGACACGGAAACAC CGCATCGAT-CCTGCA ATC CGCAGGCATCGACGCG ATCAGCGCTATCATG TERM 2093 2262428 - 2262447 + r 93 -15 -4.09739 | opp_overlap 2262428 GCAGCCAAAGAAAAA CCGGCCGA AACA TCGGCCGG TTTTCAGAAAGTTCA TERM 2094 2262447 - 2262428 - R 100 -15 -5.30616 | opp_overlap 2262428 GCAGCCAAAGAAAAA CCGGCCGA AACA TCGGCCGG TTTTCAGAAAGTTCA RPE_2052 2262791 - 2262504 - | hypothetical protein RPE_2053 2263309 - 2263004 - | hypothetical protein TERM 2095 2263323 - 2263365 + H 74 -14.9 -2.61695 | gap 2, overlap 2263322 2263320 ATGGCTGCACCCTCT GCT-GCGAGGTCGG-GGCCGC ACC GTGGCCGCCGCCCTCGTGAGC CTATTTCACCATGCA RPE_2054 2263912 - 2264310 + | BFD/(2Fe-2S)-binding domain-containing protein RPE_2055 2264516 - 2264995 + | bacterioferritin TERM 2096 2265015 - 2265042 + T 93 -17.7 -3.27525 | opp_overlap 2265031, overlap 2265028 2265028 CTGGCCCGTGATATT GCGGCGGTCGC AACCAC GCGGCCGCCGC TTGCGTTTCAACGCG TERM 2097 2265069 - 2265097 + T 100 -18.2 -4.05446 | CGCGGCGTGCGAGAC CGGCGCGAACGG TGATC CCGTTCGCGCTG TTTGTCATTAGGCGG RPE_2056 2267132 - 2265105 - | methyl-accepting chemotaxis sensory transducer TERM 2098 2265191 - 2265244 + g 70 -13.1 -3.04263 | gap 1, overlap 2265194 TCTGCGCGGCGGTGA GCACTTGCGTGGA-CGCGGTGCCAGT GTC GCTGGCGCCGCGCTGCACGTCGGTGA TGTTGGCGCTCACCT TERM 2099 2265534 - 2265511 - G 93 -16 -4.15565 | gap 1, opp_overlap 2265524 GCCACCACCGCAAAA CCGCGTCCGGC ATC GCCGG-CGCGG GCCGCCTCGATGGTC RPE_2057 2267847 - 2267371 - | membrane protein-like protein RPE_2058 2269129 - 2268005 - | hypothetical protein TERM 2100 2268848 - 2268814 - G 72 -5.6 -4.41348 | gap 1, opp_overlap 2268817 2268818 TCTGGGCGAAATAAA GCGCCGGATGCTGCG GGTCAT CG-AGCCCGCGGCGC ACCGATTTGCGGATC RPE_2059 2269501 - 2269806 + | hypothetical protein RPE_2060 2270523 - 2271008 + | hypothetical protein RPE_2061 2271260 - 2271490 + | hypothetical protein RPE_2062 2271815 - 2273338 + | diguanylate cyclase TERM 2101 2273456 - 2273509 + T 81 -15.6 -3.01791 | gap 2, overlap 2273432 ATGGGTTTCGCAAGG GCTCAACCCATCCTACGGGCTTTCGC GGCA GC-AGA-CATGTAGGATGGGTTGAGC TGTTGCGAAACCCAT RPE_2063 2274232 - 2273603 - | hypothetical protein RPE_2064 2274632 - 2274420 - | hypothetical protein TERM 2102 2274531 - 2274497 - G 89 -15.1 -4.08767 | TGGAGGCGTCCAAAA TTTCGACGCCGACGA TGCGG CCTTCGGCGTCGAAA TCGACCACGATGCCG TERM 2103 2275128 - 2275165 + H 70 -12 -3.17194 | opp_overlap 2275128 2275127, overlap 2275129 2275131 TGCACTCAGATCAAT G-CCGCGGCCGGCGGCCT CGCT AGGCTGCCG-CCGCTGTC TTGAATTCGGAGGGT TERM 2104 2275129 - 2275163 + H 83 -15.7 -3.14878 | gap 1, opp_overlap 2275128 2275127, overlap 2275128 2275131 GCACTCAGATCAATG CCGCGGCCGGCGGCCT CGCT AGGCTGCCG-CCGCTG TCTTGAATTCGGAGG TERM 2105 2275131 - 2275161 + H 89 -16.9 -3.1352 | gap 1, opp_overlap 2275128 2275127, overlap 2275129 2275128 ACTCAGATCAATGCC GCGGCCGGCGGCCT CGCT AGGCTGCCG-CCGC TGTCTTGAATTCGGA RPE_2065 2275184 - 2275696 + | hypothetical protein RPE_2066 2275851 - 2276417 + | hypothetical protein RPE_2067 2276870 - 2276532 - | hypothetical protein TERM 2106 2276611 - 2276629 + g 73 -3.9 -4.61284 | gap 1 TTTGCGCGCCTCCGA TTGC-CTG TTAT CAGCGCAA TTTTCCTTTCATATT RPE_2068 2277678 - 2277016 - | hypothetical protein RPE_2069 2279714 - 2277789 - | thiamine biosynthesis protein ThiC TERM 2107 2278478 - 2278504 + g 76 -2.2 -4.91712 | CGGGGCCTTCGATCA TCACCTGGCA GCCCTTG TCCCAGGCGA TTTTTGTCAGTTCGC TERM 2108 2279842 - 2279788 - R 90 -18.5 -2.83641 | gap 2, overlap 2279780 2279832 CAATCTATCAGGACA CCGTGTCCCGG-GC-GCGGTGCAGCGC GGA GCGCTGCGCCGCAGAACCGGGACCCCG GTTCAAGCGCCGCTA TERM 2109 2279875 - 2279832 - R 72 -11.7 -3.28712 | opp_overlap 2279870, overlap 2279788 2279864 2279865 CGCTGCGCCGCAGAA CCGGGACCCCGGTTCAA GCGCCGCTAA CAAAACCGGGGCCCCGG ATCTGCAGCGCACCA TERM 2110 2279875 - 2279864 - R 83 -7.2 -4.63218 | opp_overlap 2279870, overlap 2279832 2279865 GCGCCGCTAACAAAA CCGG GGCC CCGG ATCTGCAGCGCACCA TERM 2111 2279918 - 2279900 - R 75 -11.6 -3.56092 | opp_overlap 2279870 2279889, overlap 2279865 GCACCACGCCGCAAA CGCGGCGC GCT GCGCTGCG TCCGGGGCACGTTTC TERM 2112 2279965 - 2279942 - R 77 -2.2 -5.00884 | overlap 2279943 2279944 ACGTTTCCCAAAAAA TCGCCGCCGT CATC ACGCCGGCTC CGCGACAAAATCGAG TERM 2113 2280009 - 2279976 - R 76 -7.9 -4.36914 | opp_overlap 2279975 2279974, overlap 2279977 GGCTCCGCGACAAAA TCGAGCCAGGCGCGC ACGC GCGCGTCGGGGTCGG GGTTTTGCGTGACGT RPE_2070 2280562 - 2279954 - | thiamine-phosphate pyrophosphorylase thiG 2281331 - 2280549 - | thiazole synthase TERM 2114 2281348 - 2281406 + r 77 -12.9 -3.54424 | gap 1 AGGCGACTCCGTTGC CGCGCGCACGGCCTGCTCCCTCGCCCCG CTTG CGGGGAGAGGG-GTGGGGTGAGGGGGCG TTTCCGCGGGTCGCA RPE_2072 2281790 - 2281593 - | thiamine biosynthesis protein ThiS RPE_2073 2282857 - 2281781 - | glycine oxidase ThiO TERM 2115 2281958 - 2281940 - G 89 -17.4 -3.53224 | CAGGTTGTCGGGAAA CGCCGGCC GCA GGCCGGCG CCGATCTCGACGATA TERM 2116 2283138 - 2283121 - g 81 -4.1 -5.08824 | GGCGCACCGAAAAAA TGTTTCG ATTG CGGAACA TGCGCCGGGGTGGGC RPE_2074 2283120 - 2283719 + | PRC-barrel domain-containing protein TERM 2117 2283746 - 2283773 + F 100 -18.4 -4.72272 | CAGGTAGTTATCCGA GGCCGGGTGGCG CATG CGCCGCCCGGTC TTTTTCGTGGCAAAC TERM 2118 2284590 - 2284563 - g 70 -13.4 -3.05463 | gap 1, opp_overlap 2284564 2284576 ATCGTGCTGATCGAA GCCGCGCCGCGCA TCC TGC-CGGCGCTGC CGGAGCGGATTTCCA TERM 2119 2284737 - 2284756 + G 75 -7 -4.39002 | overlap 2284738 TTGGTGGTGTGGTCG GCCGGCGT CAAG GCGCCGGA TTTTCTCGCCGATTT RPE_2075 2283891 - 2285228 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase RPE_2076 2286986 - 2285445 - | hypothetical protein TERM 2120 2285589 - 2285642 + g 70 -6.5 -4.19817 | gap 1, opp_overlap 2285595, overlap 2285590 GCCTTCCTCGTTGAG ATGATAGTCGGCGATCATC-GCGCCG ATC CGGCGCTGCAGATTGCCGGCGAACGG TTTTAGGTCGATCAC TERM 2121 2286267 - 2286291 + g 77 -12.8 -3.63515 | overlap 2286225 2286284 CCGCGTCCACTCCCG CCGCGCGCTG CGTTC CAGCGCGCCG TTGTTGCGGATGCGC RPE_2077 2287688 - 2287161 - | hypothetical protein TERM 2122 2287405 - 2287460 + g 74 -12.4 -3.53012 | gap 1, opp_overlap 2287378 2287436 CCGCTCGGTTGCGCC TGCGCCGGCACGGCGGC-GACGCCG AGACAGA CGGCGGCCGCGGCGGTGCCCGCGGA TTTCAGCAAGGCGCG TERM 2123 2287701 - 2287678 - G 88 -14.6 -3.92659 | overlap 2287672 GGCGGAAAACGCAAA GGGCGCAGCA TCGA TGCTACGCCC TCGTAAGACTACGCC RPE_2078 2288461 - 2287739 - | ErfK/YbiS/YcfS/YnhG RPE_2079 2288714 - 2289025 + | hypothetical protein TERM 2124 2289061 - 2289084 + T 81 -12.4 -3.82824 | gap 1, overlap 2289078 TGTCGCGACGCGTAG CGCGCGCGGCG TCA CGCCGC-CGTG TTCTTGTAGATCGTG RPE_2080 2290541 - 2289072 - | amidohydrolase TERM 2125 2289299 - 2289320 + g 72 -5.7 -4.4009 | opp_overlap 2289313, overlap 2289303 TCTTGAGGATTTCCG CCGCCGCGT ACCA ACGCGTCAG TTTTGTCAGCTGCGC TERM 2126 2289518 - 2289533 + g 78 -6 -4.58395 | CCAAGAACGGCTGCA GGCTCC ACCA GGCGCC TTTTTGCGCCATCAG RPE_2081 2291527 - 2290634 - | LysR family transcriptional regulator TERM 2127 2292327 - 2292343 + G 70 -10.8 -3.53012 | opp_overlap 2292319 ACAGCAAGGACCTAC GCGCGG GGTTG CCGCGC TTTACGCCCGAGGCG RPE_2082 2291642 - 2292637 + | aldo/keto reductase RPE_2083 2292674 - 2293729 + | alcohol dehydrogenase TERM 2128 2293809 - 2293773 - f 100 -22.5 -2.90075 | opp_overlap 2293779, overlap 2293793 TGGCGCGGAACGATA TTGACAGCATGCTGCCA ATA TGGCAGCATGCTGTCAT GATCAATGAAGCCGA TERM 2129 2293779 - 2293803 + F 91 -18.7 -2.83164 | opp_overlap 2293773 2293793 GGAACGATATTGACA GCATGCTGCCA ATA TGGCAGCATGC TGTCATGATCAATGA RPE_2084 2293781 - 2294284 + | MarR family transcriptional regulator RPE_2085 2294281 - 2294727 + | hypothetical protein TERM 2130 2296773 - 2296743 - g 74 -15.5 -2.62184 | opp_overlap 2296732 2296731 CCCTCGGGCACAGCA TCGGCGACGAACT GTTGA AGATCGTCGCCGA CCGGCTGCGCGGTTG TERM 2131 2297724 - 2297681 - g 90 -18.2 -3.59262 | gap 1, overlap 2297663 GCGCACATCGTCAAA GCCGTCGTCGACATC-GCCGC CGC GCAGCGGATGACGACCACGGC CGAGGGCGTCGAGAC RPE_2086 2295089 - 2297875 + | diguanylate cyclase/phosphodiesterase RPE_2087 2298311 - 2297919 - | hypothetical protein TERM 2132 2298355 - 2298386 + H 71 -10.7 -3.39895 | opp_overlap 2298354 CTACGGATACCACAT GCTGCGGCGCGCC GGTCAA GGTGGGCCGCCGC TTCATTGCTAGGCAA RPE_2088 2298633 - 2298968 + | hypothetical protein RPE_2089 2299267 - 2299013 - | hypothetical protein TERM 2133 2299046 - 2299059 + g 73 -9.5 -3.93057 | opp_overlap 2299046, overlap 2299041 2299040 ATCGATGTTGAGAAA CGGCC GCTT GGCCG TTTCGTGCTTTTCGA TERM 2134 2299059 - 2299046 - G 71 -9.5 -3.87994 | opp_overlap 2299046 2299041 2299040 ATCGATGTTGAGAAA CGGCC GCTT GGCCG TTTCGTGCTTTTCGA RPE_2090 2299430 - 2300623 + | extensin family protein RPE_2091 2301259 - 2300624 - | TetR family transcriptional regulator RPE_2092 2301414 - 2302619 + | secretion protein HlyD family protein RPE_2093 2302649 - 2304247 + | EmrB/QacA family drug resistance transporter RPE_2094 2304438 - 2304818 + | hypothetical protein RPE_2095 2304898 - 2307204 + | TonB-dependent receptor TERM 2135 2307254 - 2307215 - T 100 -24.3 -3.54424 | opp_overlap 2307216 TCTGAGTCGGCGAAA CCGGCGAGGGGCCCGGC GTGGTT GCCGAGCCCCTCGTCGG ATCAGGGGGAAGGTT RPE_2096 2308646 - 2307576 - | methyltransferase type 12 TERM 2136 2307866 - 2307822 - G 86 -16.9 -3.23216 | TTCGATGACCATGAA GGTGCCGTCCGGCGCGAGCTG CGA CAGCACGTGGCGGGCGGCGCC GACCGGATCGCCCAT RPE_2097 2308798 - 2309832 + | AraC family transcriptional regulator TERM 2137 2309896 - 2309928 + T 71 -11.3 -3.53012 | gap 1, opp_overlap 2309911, overlap 2309918 GCGCTTCCATTGGCT CGCCGCGGCCCC AAACGGGCGA GGGGCC-CGGCG TTTCCGCCGAGCCCC TERM 2138 2309950 - 2309911 - T 95 -19.2 -3.53012 | opp_overlap 2309896 2309918 CGCCGCGGCCCCAAA CGGGCGAGGGGCCCGGCG TTTC CGCCGAGCCCCTCATTCG AAAAACGTCAGCCGG TERM 2139 2309918 - 2309943 + T 84 -17.5 -2.71011 | opp_overlap 2309911, overlap 2309896 GCCCCAAACGGGCGA GGGGCCCGGCG TTTC CGCCGAGCCCC TCATTCGAAAAACGT TERM 2140 2310192 - 2310210 + T 76 -8.8 -4.1466 | overlap 2310169 CGTTGCCGGCGACGC GGTGCGCT CTT ACCGCACC TTTTCACCCTTACCT RPE_2098 2311334 - 2310450 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 2141 2311850 - 2311866 + G 70 -11.5 -3.40403 | opp_overlap 2311822 GGTGGCTGACCCGGC CGCGGCG CGG CGTCGCG TTGTCCTGCCGCCGC TERM 2142 2312235 - 2312246 + G 75 -7.2 -4.43309 | ATGCAACTGGACCAG GCCG AGCG CGGC TTTTCGTTCCGGTTC TERM 2143 2312840 - 2312802 - g 72 -11.7 -3.53012 | gap 2, overlap 2312805 GCGCGCTCCGCCAAA CTAC-GCGCCGGCG-AACG CAC CGCTGCGCCGGCGCAGCCG GAAGCGCCGCTGCCG TERM 2144 2312836 - 2312805 - g 79 -16.6 -2.90496 | gap 1, overlap 2312802 CGCTCCGCCAAACTA CGCGCCGGCG-AACG CAC CGCTGCGCCGGCGCA GCCGGAAGCGCCGCT RPE_2099 2311692 - 2312894 + | methyltransferase RPE_2100 2312897 - 2313277 + | hypothetical protein RPE_2101 2313274 - 2315028 + | peptidoglycan glycosyltransferase murE 2315175 - 2316632 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase RPE_2103 2316629 - 2318071 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase mraY 2318082 - 2319164 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 2145 2320619 - 2320654 + G 71 -14.6 -2.62263 | opp_overlap 2320580, overlap 2320650 CGCACGCGGCGCGCG ACGCCGCCGCCTCGGG GCTG CCCGAGCCGGTGGTGC TGCTGTCGCCGGCCT murD 2319316 - 2320764 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 2146 2321735 - 2321761 + G 70 -13.6 -3.02829 | overlap 2321730 2321729 2321754 TCGTCTGGGCGGTGG GCCTGGCCGGCG TGG CCTCGGCCGGGC TGTTCGCGGCCTATC RPE_2106 2321152 - 2322303 + | cell division protein FtsW TERM 2147 2322372 - 2322396 + G 71 -12.8 -3.24232 | overlap 2322370 2322368 CACCGCTCATCCTTC TCGCCGCCGG CGGCA CCGGCGGCCA TCTGTTTCCGGCCGA murG 2322347 - 2323471 + | N-acetylglucosaminyl transferase TERM 2148 2323534 - 2323559 + F 72 -11.7 -3.28712 | GACGCTTTCCATCGC GCCGCGCCCGG TATA CCGAGGGCGGC TTCTGGCGCCGCACG TERM 2149 2323776 - 2323762 - g 72 -11.4 -3.53811 | CGGACGCGTCCGAAA GCGCCA ATG TGGCGC GGCTGCGCGAAAAAG TERM 2150 2324541 - 2324498 - g 100 -21.1 -3.28712 | gap 1 GCCCGGCCGGCACAA CGCGCTCA-ACGCCACCGCG GCGAT CGCGGTGGCGCATGAGCTCG GCCTCTCCGACGACA murC 2323638 - 2325041 + | UDP-N-acetylmuramate--L-alanine ligase TERM 2151 2325174 - 2325205 + T 71 -10.9 -3.46914 | gap 1, overlap 2325173 AACTTTCTATCCGCG CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTACTGCGTAAT RPE_2109 2325499 - 2325209 - | excinuclease ABC subunit C TERM 2152 2326025 - 2326053 + G 77 -3 -4.9792 | gap 1, opp_overlap 2326008 2326022, overlap 2326026 GCGTCGCGGAAACCG CTGCGG-CCGCCG GCAT CGGCGGACTGGAA TTTTTGTATGGCATC TERM 2153 2326378 - 2326349 - g 83 -5 -5.02074 | gap 1 CGATCCGCGAAAAAA CCGGCGG-CTC GACCTTCAA GAATCCGCCGG GACAAAGTGCCTGGA murB 2325631 - 2326596 + | UDP-N-acetylenolpyruvoylglucosamine reductase RPE_2111 2327439 - 2326615 - | hypothetical protein RPE_2112 2328741 - 2327560 - | glycosyl transferase, group 1 ddl 2328865 - 2329791 + | D-alanine--D-alanine ligase RPE_2114 2329794 - 2330735 + | polypeptide-transport-associated domain-containing protein RPE_2115 2330732 - 2332060 + | cell division protein FtsA TERM 2154 2333304 - 2333273 - g 77 -15.8 -3.05384 | gap 1 CCTGCTGCGACCCAA GCCG-GCCGTCCGGC GGC GCCAGCCGGCGCGGC GCCGCGTGCGCCCGC RPE_2116 2332154 - 2333950 + | cell division protein FtsZ TERM 2155 2333979 - 2334003 + F 100 -17.2 -4.21471 | TTGAGGCAGACGGCA GGTCCCGACC GAGTA GGTCGGGACC TTATTCTTTTGCGCT TERM 2156 2334388 - 2334407 + G 95 -6.4 -5.35224 | TCCCTCGTGATCGGA CCCGCA GACGTCAA TGCGGG TTTTATTTTTGTCCG lpxC 2334295 - 2335254 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase RPE_2118 2335517 - 2336422 + | putative lipoprotein TERM 2157 2337153 - 2337114 - g 79 -2.6 -5.03314 | gap 1, opp_overlap 2337144, overlap 2337115 TGCAGGGCGAAAAAA TCGCCGGCGATCTGC-GCG AGG CGCAGGAGGTGGTCGGCGG CCATCATTCGCCGGT TERM 2158 2337444 - 2337389 - g 71 -14.7 -2.60496 | overlap 2337386 2337388 2337428 2337430 GCCGCGCGCAAATAT TCCACGCCGGTCGACG-GCCTCGCCGC GCTG GCGGCGAAATACGCCG-CCGACGTGGC GCTGATCGACGCCGG RPE_2119 2336435 - 2338117 + | DNA repair protein RecN TERM 2159 2338177 - 2338235 + T 87 -18.8 -2.60496 | opp_overlap 2338142 2338195, overlap 2338178 2338211 2338212 CCCGCCGCTATCGCG CCGTGCGCCCCGGAATGACCCGCGAAAA ACC TTTCCCCGAGTCATTCCGGGGCGATCGC ATCTTTGCGAGCGAA TERM 2160 2338178 - 2338236 + T 74 -12.5 -3.34398 | gap 2, opp_overlap 2338142 2338195, overlap 2338177 2338211 2338212 CCGCCGCTATCGCGC CGTG--CGCCCCGGAATGACCCGCGAAAA ACC TTTCCCCGAGTCATTCCGGGGCGATCGCA TCTTTGCGAGCGAAC RPE_2120 2338553 - 2338266 - | excinuclease ABC subunit C TERM 2161 2338883 - 2338867 - g 84 -9.3 -4.56597 | opp_overlap 2338868 2338869 2338872 2338873, overlap 2338869 TCGCCCTCGCAAAAA GTCGGCG CGG CGCCGGC GCGTGGCTTTGCCAA TERM 2162 2338909 - 2338937 + G 95 -11 -4.56597 | gap 1, overlap 2338868 GCCAAGGTGCAGCAC GCGGTGCCGATGC TGTC GC-TCGGCAACGC TTTTTCCGACGACGA RPE_2121 2338594 - 2340786 + | DNA ligase, NAD-dependent RPE_2122 2342231 - 2340942 - | Bcr/CflA subfamily drug resistance transporter TERM 2163 2341367 - 2341332 - G 77 -6.8 -4.57073 | gap 1, overlap 2341310 2341355 2341358 CACGGCGCCCAAAAA TTGCAGCGCCAG-CCCG AAC CAGATCAGGCGCTCCAA AGAGTGCCTGGGCGC TERM 2164 2341619 - 2341596 - G 78 -10.2 -4.03234 | gap 1, opp_overlap 2341595 2341586 2341596 2341612, overlap 2341558 GGCGTCCGACAGAAA GCCGCTGCCCG GCG CGCGC-GCGGC CTTGCTGCGGGTTTC TERM 2165 2342385 - 2342439 + r 95 -10.7 -4.48221 | ACGGGCCGCAGCGCG GTCATCGTGCGATG-CGTTACCGCGCC AAC GGCGCGGTCGCGGCGTCGAGCCA-GAC TTTTGTCGCTTCGTC RPE_2123 2344230 - 2342401 - | peptidase M24 RPE_2124 2344269 - 2344601 + | hypothetical protein RPE_2125 2345514 - 2344630 - | ribosomal L11 methyltransferase TERM 2166 2345233 - 2345207 - G 100 -11.5 -4.46212 | gap 1 CCGTGCACCACAAAA CGGCCGGCGCGC ACCG GCGCGA-GGCCG TCGAGACTGGCCCTG TERM 2167 2346009 - 2346027 + H 100 -14.6 -4.71382 | opp_overlap 2346005 TTGTAAACAAGGGGA GAGCTCGC TAA GCGAGCTC TTTTTCCATGATTGT RPE_2126 2346035 - 2346631 + | filamentation induced by cAMP protein Fic RPE_2127 2348361 - 2346751 - | FAD dependent oxidoreductase TERM 2168 2349922 - 2349934 + G 73 -9.1 -3.96624 | CGCGAACCGCTGGAA GGTGG TCG CCACC TTTGTGATGGCGATG RPE_2128 2348537 - 2350816 + | hypothetical protein TERM 2169 2350833 - 2350853 + T 89 -16.9 -3.18681 | overlap 2350827 TCCGGTCGGCCGTCA TGCGCGGGT TTG ACCCGCGCA TTCATCCACTTGCGA RPE_2129 2351735 - 2350959 - | ErfK/YbiS/YcfS/YnhG TERM 2170 2352258 - 2352289 + G 72 -13.7 -3.01712 | gap 1 CGGATCGCGGCTATC GCCGCGGCCATCGC GGCCA GCGCTG-CCGCGGC TATTACACCCGGAGC RPE_2130 2351987 - 2352328 + | hypothetical protein TERM 2171 2352361 - 2352382 + T 100 -18.7 -4.60041 | TCATCTGAGGCGAGG CGCGGCCCG GAGA CGGGCCGCG TTTTTCCGCGTCAGT RPE_2131 2353154 - 2352393 - | hypothetical protein RPE_2132 2354133 - 2353156 - | ABC transporter related RPE_2133 2354170 - 2354793 + | hypothetical protein RPE_2134 2355107 - 2354823 - | hypothetical protein RPE_2135 2355441 - 2355148 - | hypothetical protein RPE_2136 2355644 - 2355450 - | YcfA family protein RPE_2137 2358242 - 2355702 - | UvrD/REP helicase TERM 2172 2355750 - 2355782 + g 72 -4.8 -4.4715 | overlap 2355738 CTTCTCGCCGGCCTT GTCGAAGGCGATGG TGAGT TTGTTGCCGTCGAC TTTTGTCACTTCGCC TERM 2173 2355973 - 2355954 - G 70 -10.6 -3.53012 | overlap 2355955 GCCGCTGTCGGCAAA GCCGCCGC CGCC GCGGCTGC GGTTGGCCTGGGCGC TERM 2174 2358177 - 2358132 - G 71 -12.3 -3.24708 | opp_overlap 2358153 2358155, overlap 2358130 2358133 GAGGCCTGAAAGATA GGCCGGCATCGTGGCGGCGCG GGCG CGCGCGGCAATGCCGCCGGCG GCGGGGCGATAGCCG TERM 2175 2358176 - 2358133 - G 74 -15.8 -2.54504 | opp_overlap 2358153 2358155, overlap 2358132 2358130 AGGCCTGAAAGATAG GCCGGCATCGTGGCGGCGCG GGCG CGCGCGGCAATGCCGCCGGC GGCGGGGCGATAGCC RPE_2138 2358526 - 2358699 + | hypothetical protein TERM 2176 2358767 - 2358710 - T 100 -22.7 -2.71731 | gap 1 TCTAGCCGCGAACTA CGTGCTGCGCTTCGACGGCATC-GCCAC GCT GCGGCCGATGCCGTCGGGGCGCGGCACC TCGCGATGCGCTTCC RPE_2139 2359231 - 2358707 - | hypothetical protein TERM 2177 2359291 - 2359319 + H 86 -12.4 -4.14013 | gap 1 TGCGGTATCCTTTGC CACGGTCCGGCCG AGTT CTGCCGG-CCGTG TTTTGGAGGATTTTG TERM 2178 2359742 - 2359756 + G 79 -3.4 -5.05782 | CTGAACGAGCAACTC CGCGAC CAG GGCGTG TTTTTTCCGATCGAT RPE_2140 2359337 - 2360755 + | FAD linked oxidase domain-containing protein TERM 2179 2362315 - 2362281 - g 77 -11.3 -3.85698 | opp_overlap 2362280 2362282, overlap 2362282 GCGCGGGTTCAGAAA CCGCTCAGCGCCAGC GGCCG GCTGGCGCTCGGCGC GGATCGTGTTGCGAT TERM 2180 2362314 - 2362282 - g 73 -14.8 -2.91276 | opp_overlap 2362280 2362282, overlap 2362281 CGCGGGTTCAGAAAC CGCTCAGCGCCAGC GGCCG GCTGGCGCTCGGCG CGGATCGTGTTGCGA RPE_2141 2360988 - 2364554 + | hypothetical protein TERM 2181 2364671 - 2364651 - T 100 -15.4 -5.45813 | opp_overlap 2364648 TACGAAAAAACAAAA GGCCGCGC TCAAT GCGCGGCC AAGCTTTCGGATTTG RPE_2142 2364922 - 2364659 - | hypothetical protein RPE_2143 2365104 - 2364919 - | hypothetical protein fumC 2366794 - 2365370 - | fumarate hydratase TERM 2182 2365866 - 2365839 - G 71 -14.8 -2.56164 | overlap 2365838 TCCGGAAGTAGCAAC TCTCCGAGCCCC GAGC GGGGCCCGGAGC CGAGCAGCCGGATGT TERM 2183 2366844 - 2366869 + r 76 -8.9 -4.15044 | opp_overlap 2366828 2366826 2366846 GGGGCCGCGTTCCAA TAGCCGCCCCG CGAC CAAGGCGGCTA TTTCTTGCGGAAGCG RPE_2145 2367376 - 2366867 - | hypothetical protein RPE_2146 2368049 - 2368549 + | hypothetical protein TERM 2184 2369430 - 2369417 - g 72 -6.7 -4.17762 | overlap 2369419 2369420 CACGCTGGAAAAGAA GATCG CGCG CGATC CCTCGCGGTTCGGCC RPE_2147 2368557 - 2370074 + | hypothetical protein TERM 2185 2370453 - 2370398 - g 89 -11.2 -4.18494 | gap 4, overlap 2370400 GATTGTGATCGAAAA CA-TGGTCGGCGCGGGCGGCACCACGGC GACC GCC-CGG-GCCGCGCGCGC-GCCCAATG ACGGCTACACCCTGA TERM 2186 2370450 - 2370400 - g 80 -14 -3.69216 | gap 3, overlap 2370398 TTGTGATCGAAAACA TGGTCGGCGCGGGCGGCACCACGGC GACC GCC-CGG-GCCGCGCGCGC-GCCCA ATGACGGCTACACCC RPE_2148 2370174 - 2371172 + | hypothetical protein RPE_2149 2371332 - 2371937 + | thymidylate synthase TERM 2187 2372834 - 2372848 + G 74 -12.8 -3.54424 | CGTGAGCAGATCTCC CGGGCG CCG CGCCCG TTTCCGACCATGCGG RPE_2150 2372063 - 2372965 + | thymidylate synthase TERM 2188 2373947 - 2373977 + G 76 -8.2 -4.18494 | opp_overlap 2373947 2373945 2373952, overlap 2373952 CCGGGCAGTCAAATA TCAGACGGAGGCCG GAT TGGCCTGCGTTGGA TTTTCGCTCAAAGTG RPE_2151 2373237 - 2374085 + | hypothetical protein RPE_2152 2374076 - 2374672 + | hypothetical protein RPE_2153 2377233 - 2374702 - | hypothetical protein TERM 2189 2376740 - 2376718 - G 73 -4 -4.59773 | CGCCAGGTTTAAAAA CAGCGTCCGT ATC ACGACAGCTG TCATCGACCAGATCG TERM 2190 2377038 - 2377015 - G 72 -4.5 -4.52589 | CGCGCCCAGACAAAA GATGGCCGA CCTTAT TCCGCCACC AGATAAGGCAATCCC RPE_2154 2378156 - 2377422 - | hypothetical protein RPE_2155 2378539 - 2378243 - | hypothetical protein RPE_2156 2378780 - 2379259 + | hypothetical protein RPE_2157 2379264 - 2379650 + | hypothetical protein RPE_2158 2380401 - 2383046 + | hypothetical protein RPE_2159 2384611 - 2385093 + | hypothetical protein RPE_2160 2385090 - 2385629 + | hypothetical protein RPE_2161 2385626 - 2386069 + | hypothetical protein RPE_2162 2386132 - 2387562 + | phage integrase domain/SAM domain-containing protein RPE_2163 2387915 - 2390833 + | hypothetical protein TERM 2191 2393540 - 2393524 - g 80 -9.3 -4.18934 | CATGAGTTCAACAAA GCGGCCC AGC GGGGCGC AACTCTTGCACTCAA RPE_2164 2390830 - 2393691 + | helicase domain-containing protein RPE_2165 2394637 - 2393672 - | hypothetical protein RPE_2166 2396355 - 2394634 - | hypothetical protein RPE_2167 2402525 - 2396355 - | DEAD/DEAH box helicase domain-containing protein TERM 2192 2396597 - 2396609 + g 75 -9.1 -4.07568 | opp_overlap 2396597 TGAACGGTCGGAATA GGCAC ATC GTGCC TTTTGACACCGGCCC TERM 2193 2398850 - 2398821 - G 71 -12.7 -3.31799 | overlap 2398811 2398822 CACAACGGTCGACAA TCCGGCCCCACGG CGTC CCGCGCGGCCGGC GCGCTGCTGATAACT TERM 2194 2398849 - 2398822 - G 77 -16.2 -2.58758 | overlap 2398821 2398811 ACAACGGTCGACAAT CCGGCCCCACGG CGTC CCGCGCGGCCGG CGCGCTGCTGATAAC TERM 2195 2399180 - 2399191 + g 72 -4.4 -4.53439 | opp_overlap 2399171, overlap 2399177 GAAACACGGCGTCGT TCGA CGGA TCGA TTTGTTTCGCTTTGC TERM 2196 2399387 - 2399397 + g 71 -3.2 -4.57837 | CCGGCTCGCAGACCT TGAC GAA GTCG TTTTTGAGCCACTGT RPE_2168 2403345 - 2402749 - | sigma-70 region 2 domain-containing protein TERM 2197 2403528 - 2403499 - R 79 -13.5 -3.53091 | opp_overlap 2403500 2403523 2403526, overlap 2403500 AGCGGGTGCCGGAAA CTGGCGCGCTCGA CTGC TCGAGCGCGCCCT TGGCTTAGGCTGGGG TERM 2198 2403527 - 2403500 - R 84 -17 -2.71712 | opp_overlap 2403500 2403523 2403526, overlap 2403499 GCGGGTGCCGGAAAC TGGCGCGCTCGA CTGC TCGAGCGCGCCC TTGGCTTAGGCTGGG TERM 2199 2403500 - 2403527 + r 89 -17 -3.18274 | opp_overlap 2403500 2403499, overlap 2403523 2403526 GCGGGTGCCGGAAAC TGGCGCGCTCGA CTGC TCGAGCGCGCCC TTGGCTTAGGCTGGG RPE_2169 2405461 - 2403533 - | hypothetical protein TERM 2200 2405215 - 2405192 - G 81 -8.8 -4.56597 | gap 1, opp_overlap 2405192 2405204 2405206, overlap 2405206 TCCGTTGTCCAAAAA GGCGACGGACG AAA CGGCC-TCGCC GTCTTTTTTGCCTTT TERM 2201 2405204 - 2405218 + g 89 -5.6 -5.24449 | opp_overlap 2405192 2405206, overlap 2405192 2405206 AAAGGCGACGGACGA AACGGC CTC GCCGTC TTTTTTGCCTTTCTC TERM 2202 2405206 - 2405216 + g 76 -8.2 -4.23298 | opp_overlap 2405192 2405206, overlap 2405192 2405204 AGGCGACGGACGAAA CGGC CTC GCCG TCTTTTTTGCCTTTC TERM 2203 2406032 - 2406044 + G 75 -9.1 -4.07568 | ATGCCGGGACGCTGA CGGAG GCT CTCCG TTTTGGAGGGACGAC TERM 2204 2407093 - 2407066 - g 71 -2.8 -4.63486 | gap 1, overlap 2407068 ACTCCCGCAACAAAA TATCTT-CTGGTC CAA GACGAGCAAGACA ATGGGGCCTTTTATA RPE_2170 2405755 - 2407356 + | hypothetical protein TERM 2205 2408684 - 2408662 - g 70 -10.6 -3.53012 | CTTCTTGGCGGTAAA CTGGTTGCAA TGC TTGCGACCAG TCCGGAAGTCGTCCT RPE_2171 2407369 - 2409393 + | hypothetical protein RPE_2172 2411429 - 2409501 - | ATPase central domain-containing protein RPE_2173 2412763 - 2413068 + | hypothetical protein TERM 2206 2413274 - 2413320 + F 76 -10 -3.83026 | gap 2, opp_overlap 2413274, overlap 2413279 ATTACCCGCCGCAAA GCCGCCCGCCCGCTACAGCGCT ATTTG GGAGC-GC-GCGTGCGGGCGGC TTTGCTCTGCCGAGG TERM 2207 2413320 - 2413274 - f 73 -11.5 -3.5393 | gap 2, opp_overlap 2413274 2413279 ATTACCCGCCGCAAA GCCGCCCGCCCGCTACAGCGC TATTTGG GAGC-GC-GCGTGCGGGCGGC TTTGCTCTGCCGAGG TERM 2208 2413702 - 2413686 - g 71 -15.1 -2.52464 | CCCGGCTGCAACTGA CGCGCGC CCC GCGCGCG CTGCCGGTGATGACG RPE_2174 2413520 - 2413819 + | thymidylate synthase RPE_2175 2413825 - 2414238 + | hypothetical protein RPE_2176 2414220 - 2414627 + | hypothetical protein TERM 2209 2414894 - 2414917 + G 72 -8.8 -4.07687 | gap 1, overlap 2414882 CGAGGCGCGGCGGAT CGCC-CAGGGC GAT GCACTGCGGCG TTTTGCCACCGAGAT TERM 2210 2415079 - 2415109 + G 79 -4.4 -4.84527 | opp_overlap 2415067, overlap 2415080 2415081 AAACCGCGCGAATCC GTCACGCCGCCGCC GAG GGCGACAGCGCGGA TTTTTCCTATGTGAC RPE_2177 2414634 - 2415149 + | dihydrofolate reductase RPE_2178 2415307 - 2416455 + | HflK protein RPE_2179 2416452 - 2417357 + | HflC protein TERM 2211 2417358 - 2417411 + F 86 -15.3 -3.64703 | gap 1, opp_overlap 2417361 2417363, overlap 2417359 2417361 GCCGCCGCGCGGTAA CGACATTGGTCGGGCAGGGCGAAGCC GTC GGCTTTGCCTT-CCCGACCGCCGTCC TTTAGATAAAGCGGC TERM 2212 2417359 - 2417410 + F 87 -18.8 -2.78679 | gap 1, opp_overlap 2417361 2417363, overlap 2417358 2417361 CCGCCGCGCGGTAAC GACATTGGTCGGGCAGGGCGAAGCC GTC GGCTTTGCCTT-CCCGACCGCCGTC CTTTAGATAAAGCGG TERM 2213 2417361 - 2417408 + F 79 -15.6 -2.94144 | gap 1, opp_overlap 2417361 2417363, overlap 2417359 2417358 GCCGCGCGGTAACGA CATTGGTCGGGCAGGGCGAAGCC GTC GGCTTTGCCTT-CCCGACCGCCG TCCTTTAGATAAAGC TERM 2214 2417448 - 2417422 - f 90 -13.6 -4.03234 | overlap 2417423 CGTCCTTTAGATAAA GCGGCCGGCGCA TCA TCCGCCGGCCGG AGGCCATCGCCTCGT TERM 2215 2417447 - 2417423 - f 88 -17.1 -3.01726 | overlap 2417422 GTCCTTTAGATAAAG CGGCCGGCGCA TCA TCCGCCGGCCG GAGGCCATCGCCTCG TERM 2216 2417546 - 2417558 + G 75 -3.3 -4.72272 | CGACTTCCTCATCGG CGTCG GGG TGGCG TTTTTCATCGAGGGC RPE_2180 2417511 - 2417711 + | hypothetical protein RPE_2181 2417907 - 2419406 + | peptidase S1C, Do TERM 2217 2419558 - 2419578 + F 88 -16.9 -3.05384 | CCCGGCCTCCGCTTC GCGCCATGC TTT GCATGGCGC TTCGCTCGGCCGACC TERM 2218 2419793 - 2419832 + G 77 -5.7 -4.57569 | gap 2 TTCATCGCGCTGATG GCGACCTTGTGCGGGGCGA CCAG TTGCACCG-ACATGG-CGC TTTTTGCGCGGATGA RPE_2182 2419697 - 2420794 + | transposase, IS4 family protein TERM 2219 2420963 - 2420939 - f 86 -6.9 -5.00616 | overlap 2420922 2420941 2420942 CCGCCTCTCAAAAAA GAGGGGCGGCG GCG CGCCGCACGGC GCGGGGGTAGCGTTT TERM 2220 2420961 - 2420941 - f 76 -8.1 -4.13561 | overlap 2420922 2420939 2420942 GCCTCTCAAAAAAGA GGGGCGGCG GCG CGCCGCACG GCGCGGGGGTAGCGT TERM 2221 2421690 - 2421706 + G 78 -6.5 -4.65895 | overlap 2421691 TGGGGCGACCTCGTG ATCTCGG AAG CCGAGAA TTTTTACGTGCCGCA RPE_2183 2421462 - 2422004 + | hypothetical protein TERM 2222 2422110 - 2422089 - f 86 -12.3 -4.15044 | gap 1, opp_overlap 2422097 TGTGCCTGGAAGAAA CGACCG-GGC GCT GCCGCGGTCG GTCGAGGGTCCGAAT RPE_2184 2422192 - 2422713 + | hypothetical protein RPE_2185 2423586 - 2422735 - | phosphoserine phosphatase SerB TERM 2223 2424497 - 2424517 + G 86 -9 -4.67982 | opp_overlap 2424492, overlap 2424498 CGGCAATTCACCTGG TTCCGGCA CCAGT TGCCGGAG TTTTGTTGGGTGGCG RPE_2186 2423621 - 2424607 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 2224 2424959 - 2424973 + F 100 -8.5 -5.4505 | ACAGGCGGTGTGACG GGGCC TGACC GGCCC TTTTTTATTGCCCGA TERM 2225 2426026 - 2425996 - g 74 -12.7 -3.50302 | overlap 2425990 2425987 2425997 CAACAAGAACATCAA GGTCGACGTC-CCGA TCA TCGGCGACGTCG-CC AACGTGCTCGGCGAC TERM 2226 2426120 - 2426074 - g 79 -4.3 -4.74103 | gap 1, opp_overlap 2426103, overlap 2426076 GGCGGAAGGCAAAAA GCCCGACACCAAGGCGTGGT GGCAGCTG ATCGCGACCTGGCG-CGGGC GCAATTCGCTGGCCT RPE_2187 2425025 - 2426803 + | acetolactate synthase 3 catalytic subunit TERM 2227 2427066 - 2427113 + G 70 -11.2 -3.57263 | gap 1, opp_overlap 2427078, overlap 2427095 GCTGATCTCGGCGAC CCGTGGC-AATCACGGCCAGAGC CTG GCTTTCGCCGCGACCCGCCACGG TTTGCCGGTGACGAT RPE_2188 2426839 - 2427828 + | hypothetical protein ilvH 2427931 - 2428473 + | acetolactate synthase 3 regulatory subunit RPE_2190 2428894 - 2428499 - | putative AtsE RPE_2191 2429068 - 2429412 + | transcriptional regulator/antitoxin, MazE RPE_2192 2429409 - 2429750 + | transcriptional modulator of MazE/toxin, MazF TERM 2228 2429942 - 2429954 + F 74 -9.1 -3.8709 | overlap 2429923 GCTGCTGATTGCGAT CAGCG GCA CGCTG TTTCTCGGCCAGTTT TERM 2229 2430842 - 2430815 - f 83 -7.6 -4.56597 | opp_overlap 2430802 2430801, overlap 2430833 2430834 CCGCCGCCCTAAAAA CCGGCGGCATTT CAAG AACCGGCGCCGG GGGCGTTGAGCGGTT RPE_2195 2430906 - 2431925 + | ketol-acid reductoisomerase TERM 2230 2432034 - 2432001 - f 86 -15.3 -3.54408 | opp_overlap 2432006, overlap 2432006 TTTCATCGAAACTAA CCAAACGGGATCGCG GCGA CGCGGTCCCGTTTTG CGTTGTGCGCTGTCA TERM 2231 2432029 - 2432006 - f 90 -13.8 -4.04394 | opp_overlap 2432006, overlap 2432001 TCGAAACTAACCAAA CGGGATCGCG GCGA CGCGGTCCCG TTTTGCGTTGTGCGC TERM 2232 2432006 - 2432029 + F 100 -16 -4.3208 | opp_overlap 2432006 2432001 TCGAAACTAACCAAA CGGGATCGCG GCGA CGCGGTCCCG TTTTGCGTTGTGCGC TERM 2233 2432834 - 2432881 + G 84 -13.5 -3.9392 | gap 3 TGCGCCGGCATCACC CAGCCG--AGCCGGGCCTGGATCG ACG CGCTC-AGGCCCGGCGGGCGGCTG TTATTTCCGCTGCAG TERM 2234 2433043 - 2433007 - g 70 -12.9 -3.01712 | opp_overlap 2433013, overlap 2433010 CTGCGTCGGTCAACA GGACGCCGCAGCCGG AGCGCGG CTGGCCGCGGCGTTC GCGGGCCGATGGGAT RPE_2196 2432315 - 2433157 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase RPE_2197 2433187 - 2434038 + | short-chain dehydrogenase/reductase SDR TERM 2235 2434990 - 2435011 + G 75 -11.5 -3.63895 | overlap 2434969 CCGAGCAGGTGAGGG TGCCCGCCG GCTA CGGCGCGCA TTTCCAGTCGTTCGA TERM 2236 2435327 - 2435316 - g 72 -5.8 -4.36914 | CTCGGCGCCACAAAA GTCG AGCC CGAC AGCTTCTTCTACAAT RPE_2198 2434242 - 2435945 + | sulfatase TERM 2237 2436100 - 2436086 - f 76 -12.8 -3.44146 | opp_overlap 2436087, overlap 2436087 TCCCGCCAGAATGAA CGGCGG CCC CCGCCG CCTTGTTGCGCTGCG TERM 2238 2436087 - 2436102 + F 75 -11.8 -3.65046 | opp_overlap 2436086 2436087 CCCGCCAGAATGAAC GGCGGC CCCC GCCGCC TTGTTGCGCTGCGCC TERM 2239 2436606 - 2436558 - g 79 -13 -3.62597 | gap 1, overlap 2436559 CCGACGCCGCAACAA CCGGCCGCACAGGCCGCCACGTC GCCT GCCGTGACGTCCTG-GCCGCCGC CGATGGCGCCGCCGC TERM 2240 2436605 - 2436559 - g 77 -16.5 -2.77344 | gap 1, overlap 2436558 CGACGCCGCAACAAC CGGCCGCACAGGCCGCCACGTC GCCT GCCGTGACGTCCTG-GCCGCCG CCGATGGCGCCGCCG RPE_2199 2436168 - 2437037 + | hypothetical protein TERM 2241 2437071 - 2437085 + T 71 -11.4 -3.53012 | opp_overlap 2437080 GTCCCGGGCGCGATG CGGCAC GAA GTGCCG TTTCGCAGAACCGGG TERM 2242 2437134 - 2437096 - T 84 -15.2 -3.28712 | overlap 2437080 TGCCGTTTCGCAGAA CCGGGACCGCAACGAAGG CAG CATTCGCAACGGCCCCGG ATCAGCAGCGCACCA RPE_2200 2438573 - 2437233 - | major facilitator transporter RPE_2201 2440279 - 2438729 - | substrate-binding region of ABC-type glycine betaine transport system TERM 2243 2439082 - 2439062 - G 70 -11.1 -3.53012 | overlap 2439072 GCGCTGTTCGCGAAA CCCCAAGCC ATA GGCTTGGCG CAGCGCCGCCCATTC RPE_2202 2441043 - 2440276 - | ABC transporter related RPE_2203 2441167 - 2441433 + | hypothetical protein RPE_2204 2441430 - 2441645 + | hypothetical protein RPE_2205 2441668 - 2442366 + | hypothetical protein TERM 2244 2442491 - 2442520 + G 73 -10.6 -3.70902 | GCTAAGACCCTTTGT CGCCCCGTTCCG GGTCGA CGGATCGGTGCG TTTCCATCTCAAGGC TERM 2245 2443417 - 2443405 - g 79 -4.7 -4.77567 | opp_overlap 2443405 AGTCCGACAAGAAAA CCGGC GCG GTCGG GCGGGTTAGTTAGGT RPE_2206 2442441 - 2443430 + | hypothetical protein RPE_2207 2443713 - 2443480 - | transcriptional regulator/antitoxin, MazE RPE_2208 2444780 - 2443764 - | biotin synthase TERM 2246 2445382 - 2445367 - g 70 -6.1 -4.2558 | opp_overlap 2445366 GACGTTCGAGGAAAA GCTGG AAGTCG CCAGC CTGTTGGACTCGATG RPE_2209 2445263 - 2446828 + | 2-isopropylmalate synthase TERM 2247 2446882 - 2446856 - f 78 -6.4 -4.64861 | opp_overlap 2446860, overlap 2446857 2446860 GCGTTCGAAAAGAAA TGCACGCAGCGC CTG GCGCTGCGTTTT CTTTTGCACCGCACC TERM 2248 2446878 - 2446860 - f 83 -16 -2.84636 | opp_overlap 2446860, overlap 2446857 2446856 TCGAAAAGAAATGCA CGCAGCGC CTG GCGCTGCG TTTTCTTTTGCACCG TERM 2249 2446860 - 2446878 + F 100 -16 -5.07652 | opp_overlap 2446860 2446857 2446856 TCGAAAAGAAATGCA CGCAGCGC CTG GCGCTGCG TTTTCTTTTGCACCG TERM 2250 2447026 - 2447043 + G 84 -6.9 -4.84274 | GCAAGTTGATTCTGG CTGCGGC GTCG GTCGCGG TTTTTGCTGTGGTTG TERM 2251 2447873 - 2447859 - g 70 -6.4 -4.29106 | opp_overlap 2447859 GCGGAGATGAAGAAA TCCGGT AAG ACCGAA TTGATCACGCTCACC RPE_2210 2447007 - 2448011 + | TRAP dicarboxylate transporter, DctP subunit TERM 2252 2448058 - 2448013 - f 71 -8.7 -3.95584 | opp_overlap 2448018 2448019, overlap 2448014 2448017 GTCCGACCAAGTAAA TCCACCATCGGGCGCCCGCGC TTTG GCGCGGGCGCCCGCCATTTTC AAGCCAGTTCGAGTT TERM 2253 2448054 - 2448017 - f 86 -18.3 -2.71693 | opp_overlap 2448018 2448019, overlap 2448014 2448013 GACCAAGTAAATCCA CCATCGGGCGCCCGCGC TTTG GCGCGGGCGCCCGCCAT TTTCAAGCCAGTTCG TERM 2254 2448018 - 2448053 + F 100 -17.4 -4.08692 | opp_overlap 2448017 2448014 2448013, overlap 2448019 ACCAAGTAAATCCAC CATCGGGCGCCCGCGC TTTG GCGCGGGCGCCCGCCA TTTTCAAGCCAGTTC TERM 2255 2448019 - 2448052 + F 93 -20.9 -3.04894 | opp_overlap 2448017 2448014 2448013, overlap 2448018 CCAAGTAAATCCACC ATCGGGCGCCCGCGC TTTG GCGCGGGCGCCCGCC ATTTTCAAGCCAGTT TERM 2256 2448187 - 2448211 + G 73 -14.3 -3.15861 | opp_overlap 2448186 2448172 CCTGATCGCAACGAT GATCGGCGGCG CCA CGCTGCTGATC TTCATCGCCGTGATG RPE_2211 2448137 - 2448721 + | tripartite ATP-independent periplasmic transporter DctQ RPE_2212 2448718 - 2450043 + | TRAP dicarboxylate transporter, DctM subunit RPE_2213 2450166 - 2450750 + | hypothetical protein TERM 2257 2450797 - 2450818 + T 100 -17.3 -3.93369 | CGCAGGATCACGCCA GAGCCGCCC GCAG GGGCGGCTC TTTCGTTGAAATTCC RPE_2214 2451555 - 2451199 - | hypothetical protein RPE_2215 2451854 - 2453104 + | glycosyl transferase family protein RPE_2216 2453532 - 2453101 - | hypothetical protein RPE_2217 2454423 - 2453653 - | uroporphyrin-III C-methyltransferase TERM 2258 2454041 - 2454022 - G 79 -11.4 -3.86346 | gap 1 CGAGGTGCCGAGAAA CGCCG-CCG CCG CGGTCGGCG TGGTGATGCCGGGCA RPE_2218 2455763 - 2454420 - | cobyrinic acid a,c-diamide synthase TERM 2259 2454477 - 2454460 - G 76 -8.3 -4.23615 | ACCAGATGGAAGAAA CTGCCGG TGAC CCGGCCG CGGCGGCTGCCGGTC RPE_2219 2456529 - 2455750 - | precorrin-4 C11-methyltransferase RPE_2220 2456921 - 2456526 - | cobalamin biosynthesis protein G; CbiG RPE_2221 2458141 - 2456918 - | precorrin-6y C5,15-methyltransferase, subunit CbiE TERM 2260 2458328 - 2458274 - g 91 -12.7 -4.18018 | gap 2, opp_overlap 2458275 2458320, overlap 2458279 CGGCCGCACCGAAAA TCCAACGCCGCCGCCGATCGCCTACCG CGT CGGC-GG-GTTCGGCGGCGTCGACGGT CTGGTCGACTATCTG TERM 2261 2458323 - 2458279 - g 85 -16.4 -3.38281 | gap 2, opp_overlap 2458275 2458320, overlap 2458274 GCACCGAAAATCCAA CGCCGCCGCCGATCGCCTACCG CGT CGGC-GG-GTTCGGCGGCGTCG ACGGTCTGGTCGACT RPE_2222 2458245 - 2458922 + | cobalt-precorrin-6x reductase RPE_2223 2459665 - 2458889 - | precorrin-3B C17-methyltransferase TERM 2262 2459415 - 2459398 - G 75 -4.8 -4.62069 | gap 1, overlap 2459400 CCGCCATCGCAAAAA CG-CCGG GATCG CCGGACG ACACCACGACGACGC RPE_2224 2460393 - 2459662 - | precorrin-2 C20-methyltransferase cobH 2461019 - 2460390 - | precorrin-8X methylmutase RPE_2226 2461744 - 2461016 - | hypothetical protein RPE_2227 2462936 - 2461830 - | CitB domain-containing protein TERM 2263 2462334 - 2462289 - G 75 -11.6 -3.64682 | opp_overlap 2462297, overlap 2462291 CATCAAATGGTGAAA CAGCCGCCGCGCCCGCGACG GCGCTT CGATGCGGTCGCCGCAGCCG CCATCGCCGCCGCCG TERM 2264 2462310 - 2462291 - G 73 -12.8 -3.39772 | opp_overlap 2462297, overlap 2462289 TCAAATGGTGAAACA GCCGCCGC GCCC GCGACGGC GCTTCGATGCGGTCG TERM 2265 2462584 - 2462535 - G 70 -10.6 -3.50869 | overlap 2462565 CAGCACGCGATAGAA TGCGCCGTCG-CCCGGCGTCGCGG CCAG CAACGCCGCCGGATCGGCGGCG-A GCAGAACGGCGATGA TERM 2266 2462583 - 2462565 - G 84 -17.4 -3.14132 | overlap 2462535 CGTCGCGGCCAGCAA CGCCGCCG GAT CGGCGGCG AGCAGAACGGCGATG RPE_2228 2464305 - 2462923 - | tricarballylate dehydrogenase TERM 2267 2463846 - 2463877 + g 78 -13.8 -3.54424 | gap 1, opp_overlap 2463839 TCAGCAATCCGCAGG CCTCGGCGTCGTGCA CGA TGCG-GATGCCGAGG TTTCGCGCGGTGGCG TERM 2268 2463966 - 2463934 - G 81 -8.3 -4.56597 | overlap 2463935 GCCGCCGGCGAAAAA CGCGGTGCGCTGC GACCAGG GCATCACGCCGCG GCCGCGGCACTGCAG TERM 2269 2464904 - 2464894 - g 70 -2.4 -4.65895 | overlap 2464896 TGCTCGACGCAAAAA TCCG CCG CGGT ACGCGCAATTCCGCG TERM 2270 2465199 - 2465150 - g 82 -16.3 -3.27525 | gap 1, opp_overlap 2465150, overlap 2465145 CGCGCGCAAACTCAA CG-CGACCGAACGCGCGGCGCGGC GCA GCAACGCCACGCGGCCGCTCGACG TGTTGGCCGAATTCG TERM 2271 2465481 - 2465435 - g 73 -13.7 -3.17723 | gap 2 CTATCTCGAACTGAA TCTGCGGCTCGGCGAGGGCACCG GTG CGGTGC--TGGCCGTGCCGCTGA TCCGCGCCGCCTGTG RPE_2229 2464485 - 2465549 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase RPE_2230 2465546 - 2466304 + | precorrin 6A synthase RPE_2231 2467163 - 2466486 - | hypothetical protein RPE_2232 2467917 - 2467207 - | Cob(II)yrinic acid a,c-diamide reductase TERM 2272 2468890 - 2468858 - g 72 -8.2 -4.07568 | overlap 2468859 TCGGCGTCTGCAAAA GGCCGGCGACCGTC GCCGT GTCGAGCGCCGGCG GCTACACCTTCCTGT RPE_2233 2468641 - 2469084 + | hypothetical protein TERM 2273 2469536 - 2469560 + G 76 -14.9 -3.14132 | opp_overlap 2469535 2469532 2469530 GCTCAATCAGATCAT CGCCGCCGCGG TGC CCGAGGTGGCG TTCGTCGCCGCCGGG RPE_2234 2469081 - 2469617 + | adenosylcobinamide kinase TERM 2274 2469706 - 2469653 - f 89 -17.5 -3.23452 | opp_overlap 2469656 2469661 2469665, overlap 2469657 2469665 ATTGCGAGAAGCGAA GCTACGAAGCAATCCATGGGCTTCG TGCT CGGAGCCTATGGATTGCTTCGCTTC GCTCGCAATGACGGG TERM 2275 2469656 - 2469703 + F 100 -24.4 -3.06183 | opp_overlap 2469653 2469657 2469665, overlap 2469661 2469665 GCGAGAAGCGAAGCT ACGAAGCAATCCATGGGCTTCG TGCT CGGAGCCTATGGATTGCTTCGC TTCGCTCGCAATGAC TERM 2276 2469702 - 2469657 - f 100 -23.5 -2.57985 | opp_overlap 2469656 2469661 2469665, overlap 2469653 2469665 CGAGAAGCGAAGCTA CGAAGCAATCCATGGGCTTCG TGCT CGGAGCCTATGGATTGCTTCG CTTCGCTCGCAATGA TERM 2277 2469661 - 2469698 + F 100 -21.5 -3.19192 | opp_overlap 2469657 2469653 2469665, overlap 2469656 2469665 AAGCGAAGCTACGAA GCAATCCATGGGCTTCG TGCT CGGAGCCTATGGATTGC TTCGCTTCGCTCGCA TERM 2278 2469694 - 2469665 - f 71 -10.7 -3.41581 | opp_overlap 2469661 2469656 2469665, overlap 2469657 2469653 GAAGCTACGAAGCAA TCCATGGGCTTCG TGCT CGGAGCCTATGGA TTGCTTCGCTTCGCT TERM 2279 2469665 - 2469694 + F 85 -15.1 -3.40788 | opp_overlap 2469665 2469657 2469653, overlap 2469661 2469656 GAAGCTACGAAGCAA TCCATGGGCTTCG TGCT CGGAGCCTATGGA TTGCTTCGCTTCGCT TERM 2280 2470389 - 2470368 - g 75 -2.8 -4.7497 | opp_overlap 2470352, overlap 2470370 GCGATCGAGCAAAAA CTCGGCGC GTTGCT GCGCCCGG GTGTCCGCATGGTGC RPE_2235 2469774 - 2470796 + | cobalamin biosynthesis protein CobW TERM 2281 2470862 - 2470817 - f 81 -16.3 -2.78384 | gap 1, opp_overlap 2470812, overlap 2470821 CGTGCGCGCACCACA CTAATCACGT-CATGCCCGGGC TTG ACCCGGGCATCCACGCGATCAG GCGAGGCTTTCGTTG TERM 2282 2470858 - 2470821 - f 77 -13.5 -3.29471 | gap 1, opp_overlap 2470812, overlap 2470817 CGCGCACCACACTAA TCACGT-CATGCCCGGGC TTG ACCCGGGCATCCACGCGA TCAGGCGAGGCTTTC TERM 2283 2471452 - 2471477 + G 82 -11.7 -4.07568 | opp_overlap 2471445 2471446, overlap 2471445 GCGACAAACCCGATG CCGCGCAGCCG ATGC CGGCGGCGGGG TTTTGGCAGCCCGCG TERM 2284 2472048 - 2472036 - g 77 -6.9 -4.56775 | overlap 2472037 ACCGCGCGTGAAAAA CGCCG CGT CGGCA TCGTGCTGGCGAACT TERM 2285 2473282 - 2473313 + G 73 -10.9 -3.63744 | gap 1, overlap 2473278 2473280 ACAACCCTTTCGCTC CGT-CATGGCCGGG CTTGT CCCGGCCATCCACG TCTTTTGACGCACAC TERM 2286 2474111 - 2474091 - g 78 -13.9 -3.53012 | GTGTTCGGCGCCAAA CCCGGCGCC TAT GGCGCGGGG CTGCAGACGCTGATC TERM 2287 2474519 - 2474538 + G 81 -7.8 -4.68103 | opp_overlap 2474507 2474508 CAAGGGCGCGACCGA GATCGCCG CCAC CGTCGATC TTTTGTTCGGCTTCG cobN 2470947 - 2474777 + | cobaltochelatase RPE_2237 2474774 - 2475397 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2288 2475554 - 2475576 + F 77 -13.4 -3.33696 | CCCGGCCTCCACTCC GCGACGATGC TGC GCATCGCCGC TTCGTTCGGCCGACC TERM 2289 2476032 - 2476007 - g 70 -10.3 -3.65201 | GAACATGTCGAACAA CGCCGCGGTGG CGGT CGACGGCGGCG AGATCGGCCGCGCCC RPE_2238 2475864 - 2477351 + | cobyric acid synthase RPE_2239 2478295 - 2477324 - | cobalamin biosynthesis protein CobD TERM 2290 2477536 - 2477551 + g 72 -5.4 -4.4009 | TCTCCGGCCAGCCGG CATTGG GCGA CCGATG TTTTGTGGCGTCGCG RPE_2240 2478331 - 2479350 + | aminotransferase, class I and II RPE_2241 2479654 - 2479337 - | hypothetical protein RPE_2242 2479872 - 2481227 + | hypothetical protein RPE_2243 2481232 - 2482092 + | hypothetical protein RPE_2244 2482914 - 2482117 - | hypothetical protein RPE_2245 2483098 - 2483514 + | hypothetical protein TERM 2291 2483562 - 2483530 - T 70 -12.7 -2.96695 | gap 1, opp_overlap 2483559, overlap 2483527 GCCGCGACGAAATCA GCGGCGGCGTCGCG GCCTAT CGCGACGTCGC-GC CAGCGCCTGAGGCAG RPE_2246 2485708 - 2483582 - | periplasmic sensor hybrid histidine kinase TERM 2292 2483837 - 2483813 - G 88 -9.9 -4.40804 | CACGATGTCAGAAAA CACCCAGCGGA TGT CCCGGCGGGTG CCGAGCAGTTCCAGC TERM 2293 2485249 - 2485223 - G 85 -5.7 -5.0538 | gap 1, overlap 2485225 GCTGACGCCAAAAAA CGGTGCTCCGCC ATAG GGCGG-GCGCGG ACGCAGGATCTGGCC RPE_2247 2485939 - 2486253 + | putative cytochrome c precursor RPE_2248 2486382 - 2487521 + | acyl-CoA dehydrogenase domain-containing protein TERM 2294 2487601 - 2487548 - f 84 -16.3 -3.09635 | gap 2, opp_overlap 2487551 2487556 2487560, overlap 2487552 2487556 2487560 2487567 ATTGCGAGGAGCGAA GCG-A-CGAAGCAATCCAGAAGTCC CAGCAC GGACCGCTGGATTGCTTCGCTTCGC TCGCAATGACGGGGA TERM 2295 2487551 - 2487596 + F 78 -14.8 -3.06183 | opp_overlap 2487548 2487552 2487556 2487560 2487567, overlap 2487556 2487560 GCGAGGAGCGAAGCG ACGAAGCAATCCAGAAGTCC CAGCAC GGACCGCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 2296 2487595 - 2487552 - f 91 -20.5 -2.55544 | opp_overlap 2487551 2487556 2487560, overlap 2487548 2487556 2487560 2487567 CGAGGAGCGAAGCGA CGAAGCAATCCAGAAGTCC CAGCAC GGACCGCTGGATTGCTTCG CTTCGCTCGCAATGA TERM 2297 2487591 - 2487556 - f 76 -14.1 -3.22388 | opp_overlap 2487551 2487556 2487560, overlap 2487552 2487548 2487560 2487567 GAGCGAAGCGACGAA GCAATCCAGAAGTCC CAGCAC GGACCGCTGGATTGC TTCGCTTCGCTCGCA TERM 2298 2487556 - 2487591 + F 70 -11.9 -3.19192 | opp_overlap 2487556 2487552 2487548 2487560 2487567, overlap 2487551 2487560 GAGCGAAGCGACGAA GCAATCCAGAAGTCC CAGCAC GGACCGCTGGATTGC TTCGCTTCGCTCGCA RPE_2249 2487648 - 2488811 + | acyl-CoA dehydrogenase domain-containing protein TERM 2299 2488910 - 2488852 - f 83 -15.8 -3.14931 | opp_overlap 2488853 CGGATTGCGCAGCAA TCCGGGTGAGGGGGCGCATCGGCGAGTC CCG GCCTCGCGGAGACGCCCCCTCATCCCAC CCTTCTCCCCGCGAG RPE_2250 2489002 - 2489652 + | glutathione S-transferase TERM 2300 2489785 - 2489801 + G 83 -13.7 -3.80573 | opp_overlap 2489780 2489781 ATGCAAGAAACGCCA TGCCCGG GCT CCGGGCA TTTGATGCTGATCAG RPE_2251 2489770 - 2490591 + | AraC family transcriptional regulator TERM 2301 2490788 - 2490774 - g 74 -7.8 -4.19817 | overlap 2490777 CTGACCGATCCAAAA CAGCAC CAC GTGCCG GTGACGCCGGAGGAA RPE_2252 2490717 - 2491583 + | hypothetical protein TERM 2302 2491584 - 2491635 + F 72 -11.7 -3.33696 | gap 2, overlap 2491586 2491588 GGATTGTTGCATTGA GCTCTGTCATTCCGGGCGTGCGCCC AAGA GAGCGCAT-TCCGGAATGAC-GATC TTGATTGAGGCACCG TERM 2303 2491586 - 2491633 + F 73 -12.9 -3.23853 | gap 2, overlap 2491584 2491588 ATTGTTGCATTGAGC TCTGTCATTCCGGGCGTGCGCCC AAGA GAGCGCAT-TCCGGAATGAC-GA TCTTGATTGAGGCAC TERM 2304 2491588 - 2491632 + F 74 -14.4 -2.54098 | gap 1, overlap 2491586 2491584 TGTTGCATTGAGCTC TGTCATTCCGGGCGTGCGCCC AAGA GAGCGCAT-TCCGGAATGACG ATCTTGATTGAGGCA RPE_2253 2491690 - 2493291 + | AMP-dependent synthetase and ligase TERM 2305 2494136 - 2494122 - g 81 -11.4 -3.97307 | GCCACCGAAGAAGAA CTCGGC GGC GCCGAG ATGCACACCTCGATC RPE_2254 2493426 - 2495045 + | propionyl-CoA carboxylase TERM 2306 2496043 - 2496029 - g 74 -5.6 -4.56597 | GCCGCCGGCGAAAAA CTGCCG CTG CGCCAG GACGACGTCAAATTC TERM 2307 2496764 - 2496789 + G 74 -12.5 -3.53012 | gap 1, overlap 2496765 ACCGTGCGCGATCTC ACC-CGCGCGCC GCC GGCGCGCGCGGC TTTGAGCGGCGGCGA TERM 2308 2496765 - 2496788 + G 75 -16 -2.71712 | gap 1, overlap 2496764 CCGTGCGCGATCTCA CC-CGCGCGCC GCC GGCGCGCGCGG CTTTGAGCGGCGGCG RPE_2255 2495042 - 2497057 + | carbamoyl-phosphate synthase L chain, ATP-binding RPE_2256 2497089 - 2497868 + | enoyl-CoA hydratase TERM 2309 2497915 - 2497969 + F 71 -11.5 -3.39895 | opp_overlap 2497924, overlap 2497919 2497947 CCCGCCGCGACAGCG GCGGGAGAACCCGGAATCTCG CTCCGAATAGTCT CGGGATTCCGGGTTCGCTCAC TTCGTTCGTGCCCCG TERM 2310 2498313 - 2498344 + G 70 -3.7 -4.54727 | gap 2, overlap 2498314 TTGGGCGCTGGATTC TGGATCATGGCGCCG TGCC CGACGCC--GATCCG TTTTCGTTTACCAAG TERM 2311 2498455 - 2498491 + G 79 -16.5 -2.87931 | overlap 2498446 2498464 GGTGATCGTGGCGTC GCTGGCGATCGCCGCGG CGT TCGCGGTGTTTGCCGGC TATCTCGAGCGTCAC TERM 2312 2498696 - 2498706 + G 72 -4.6 -4.4648 | overlap 2498690 GCGCTGTGGGCCAAT CTGC ATG GCGG TTTTGTGCTGGGGCT RPE_2257 2498150 - 2499604 + | hypothetical protein RPE_2258 2500865 - 2499612 - | beta-lactamase TERM 2313 2499847 - 2499826 - G 78 -10.1 -4.13945 | opp_overlap 2499836, overlap 2499830 2499837 ATCGTCACCGCAAAA CCGAGACCG AAGC CGATCCCGG CATTGGTCGCCTCCG TERM 2314 2501769 - 2501782 + G 74 -2.3 -4.81212 | overlap 2501758 2501770 ACCACCATGGCGTTT TCGGC CATC GTCGG TTTTGTTGTGCTGAG RPE_2259 2501178 - 2502116 + | hypothetical protein RPE_2260 2502231 - 2503661 + | aldehyde dehydrogenase TERM 2315 2503688 - 2503714 + F 100 -13.7 -4.39571 | gap 1, opp_overlap 2503683 2503688 GATCGAACAAGTCAA CGCCGGGGTGGC GATT GTC-CCCCGGCG TTTTGCGTTTGTAGA TERM 2316 2503883 - 2503902 + F 79 -9.2 -4.2123 | opp_overlap 2503853 GCGGCTCCGCAGTTC CGGCGTCG ACCC CGACGGCG TTTGTTGCGTGCGTA TERM 2317 2504854 - 2504836 - g 75 -9.5 -4.15044 | GTTCTGCGGAACAAA GCGGCAG GCTCG CCGCCGC CATGGCCAAGGCGAA TERM 2318 2505044 - 2505023 - g 71 -12.3 -3.28712 | gap 1 CGCGGCCTTCGACAA GACCGGC-CG CGA CGTGCCGGTC CTGGTCGACCTAAAA TERM 2319 2505515 - 2505504 - g 70 -2.2 -4.58395 | CCGATCCCGCAAAAA CTGG CACG CCAA GGCGTCAAGGACATG RPE_2261 2504136 - 2505842 + | dihydroxy-acid dehydratase RPE_2262 2506135 - 2505857 - | hypothetical protein RPE_2263 2506381 - 2506662 + | hypothetical protein TERM 2320 2507018 - 2506977 - g 73 -14.4 -3.14344 | gap 1, overlap 2506954 CAGGCCGCGCACGAA CCG-CGCGCCGATCCGGCC CGTTC AGCCTGATCGGGGCGACGG CGATCTCCGGCGTGG TERM 2321 2507611 - 2507591 - g 70 -2.4 -4.58395 | overlap 2507593 GGCATTTTTGAAAAA CTGTTCGG CAAGT CCGAGCCG TTCAGCGCGATACTG RPE_2264 2506928 - 2508082 + | hypothetical protein TERM 2322 2508343 - 2508322 - g 95 -5.7 -5.40072 | opp_overlap 2508331 2508335, overlap 2508304 2508323 2508325 2508326 CGCCTCTCAAAAAAA TGAGGGGCG GCGG CGCGCCGCA CGGCGCGGGGGGTAG RPE_2265 2508321 - 2509058 + | hypothetical protein TERM 2323 2509300 - 2509280 - g 80 -9.6 -4.19238 | overlap 2509281 GCTGGAAGCGGAAAA TGCCGGGC TGCGC GCCCGGCT CAACCGGCTGGAACG TERM 2324 2509299 - 2509281 - g 72 -13.1 -3.11222 | overlap 2509280 CTGGAAGCGGAAAAT GCCGGGC TGCGC GCCCGGC TCAACCGGCTGGAAC RPE_2266 2509152 - 2510366 + | hypothetical protein TERM 2325 2510388 - 2510368 - T 76 -11.1 -3.73775 | overlap 2510369 GGCAGTTCCAGTAAA GGGCGCAGT GCA ACTGCGCCG CACCGATCGCGTCGA TERM 2326 2510387 - 2510369 - T 77 -14.6 -2.84051 | overlap 2510368 GCAGTTCCAGTAAAG GGCGCAGT GCA ACTGCGCC GCACCGATCGCGTCG RPE_2267 2510882 - 2510430 - | hypothetical protein RPE_2268 2511586 - 2510942 - | hypothetical protein RPE_2269 2512722 - 2511583 - | hypothetical protein RPE_2270 2513144 - 2513581 + | hypothetical protein RPE_2271 2514460 - 2513708 - | short-chain dehydrogenase/reductase SDR TERM 2327 2514290 - 2514331 + g 70 -10.1 -3.67597 | gap 1, overlap 2514288 2514281 2514291 2514328 CACCGCGACCGCCTT GCCGCCGGCGGCGGTGAT CTTGCTC ACCACCGC-GTCGGCGCC TTCTTGGCTGGAGGC RPE_2272 2514541 - 2514867 + | ArsR family transcriptional regulator RPE_2273 2516773 - 2514905 - | hypothetical protein TERM 2328 2515228 - 2515241 + g 74 -2.4 -4.82901 | opp_overlap 2515228 TCGACGAATCGAAAA TCGT GATCAA ACGA TTTTTGTCGCGCACC TERM 2329 2517137 - 2517158 + H 79 -13.7 -3.50853 | gap 1 ATGTGGCTTCGCGAT CCCGCGGCGC GTT GCGCC-CGGG TTGTGCTTGGGAACG TERM 2330 2517708 - 2517676 - g 89 -11.2 -4.2704 | CGCACCACCAAGAAA GGCGTCGAGCACCA GAACA CGGTGCGCGAGGCC GACATCAACGCGCGG RPE_2274 2517445 - 2517768 + | ArsR family transcriptional regulator TERM 2331 2517800 - 2517817 + T 100 -12.7 -5.07486 | opp_overlap 2517800 CGCTGACACAGCAAA CCCGGCA TCGC TGCCGGG TTTTTGTTGGACGTC TERM 2332 2517817 - 2517800 - T 83 -12.7 -3.88498 | opp_overlap 2517800 CGCTGACACAGCAAA CCCGGCA TCGC TGCCGGG TTTTTGTTGGACGTC TERM 2333 2517905 - 2517881 - T 91 -18.7 -2.87564 | opp_overlap 2517881 CGATGCGCCGAGACA GCATGATCCCG TTT CGGGATCATGC TTTTGCTCGATCAAC TERM 2334 2517881 - 2517905 + T 100 -18.7 -4.2828 | opp_overlap 2517881 CGATGCGCCGAGACA GCATGATCCCG TTT CGGGATCATGC TTTTGCTCGATCAAC RPE_2275 2521119 - 2517916 - | peptidase C14, caspase catalytic subunit p20 TERM 2335 2518790 - 2518827 + g 89 -16.9 -3.53012 | opp_overlap 2518745 GCCGTGGAGCTTGCC GGGGTGCCGGCCGCAGG CGTT CCTGCGGCTGGTCCGCC TTTCGCGCCGGCCGG TERM 2336 2519015 - 2519052 + g 89 -16.9 -3.53012 | overlap 2519007 ACCGTGGAGCTTGCG GGGGTGCCGGCCGCAGG CGTT CCTGCGGCTGGTCCGCC TTTGGCGCCGGCCGG TERM 2337 2519560 - 2519511 - G 89 -10.6 -4.17316 | gap 2, overlap 2519513 2519514 ACGGCGCCAAAAGAA CAGCCGCGCTGGCA-C-CCGCGGC TCCG GCCGCGATGATGCCCGCGCCGACG CCCGCGCCGACCCCC TERM 2338 2519559 - 2519513 - G 75 -11.6 -3.68435 | gap 3, overlap 2519511 2519514 GGCGCCAAAAGAACA GCC-GCGCTGGCA-C-CCGCGGC TCCG GCCGCGATGATGCCCGCGCCGAC GCCCGCGCCGACCCC TERM 2339 2519881 - 2519865 - G 83 -9.3 -4.42062 | GATCGTCGAAATAAA CCGGCCG ACG CGGCAGG AAGAACACCGGCGGC TERM 2340 2521246 - 2521293 + r 100 -34.2 -3.66178 | overlap 2521247 GCAACGGTGCCGTGA GGCAGGTGGAGGGCGGGGCGGC CGCG GCCGCCCCGCCCTCCACCAGCA TTTCGCATTGAGGCA TERM 2341 2521247 - 2521292 + r 100 -37.7 -2.79492 | overlap 2521246 CAACGGTGCCGTGAG GCAGGTGGAGGGCGGGGCGGC CGCG GCCGCCCCGCCCTCCACCAGC ATTTCGCATTGAGGC RPE_2276 2522106 - 2521642 - | MarR family transcriptional regulator RPE_2277 2522232 - 2523053 + | alpha/beta hydrolase fold TERM 2342 2523686 - 2523673 - g 73 -3.7 -4.65895 | overlap 2523674 2523675 GCGCTGACCGAAAAA TCCGG CGCG CCGGC CTGGAAGTCGCTGCC RPE_2278 2523106 - 2523873 + | alpha/beta hydrolase fold TERM 2343 2523889 - 2523921 + F 100 -21.9 -3.19018 | CTTCTGTTAGCCTCG GGCGGGCCGCAGCGC ACA GCGCCGCGGCCCGCA TTGCGTTGGGCTGTT RPE_2279 2524086 - 2524373 + | excinuclease ABC subunit C TERM 2344 2524728 - 2524708 - g 72 -8.3 -4.11216 | opp_overlap 2524694, overlap 2524711 GCGCTACCGCCAAAA TCACAAGTC CTA GACTTGGGA TGTGGCGCCGGGGTT RPE_2280 2524576 - 2525196 + | methyltransferase type 11 RPE_2281 2525330 - 2525749 + | excinuclease ABC subunit C TERM 2345 2525847 - 2525828 - T 100 -16.4 -4.41348 | opp_overlap 2525828 GGTGTTGGAAACAAA CCCCGGCG TTTC CGCCGGGG TTTTGCATTGTTGTA TERM 2346 2525828 - 2525847 + T 100 -16.4 -4.37734 | opp_overlap 2525828 GGTGTTGGAAACAAA CCCCGGCG TTTC CGCCGGGG TTTTGCATTGTTGTA TERM 2347 2525981 - 2526020 + T 82 -11.5 -3.97444 | gap 1, overlap 2525980 2525975 TGATCAGCTGGCGAT GCTC-GCTGCCGACTGAA ATCAG TTCAGTCCGCAGCAGCGC TTGTATTTCTTACCT RPE_2282 2526604 - 2525999 - | yecA family protein TERM 2348 2527008 - 2527027 + r 89 -15 -3.92267 | opp_overlap 2527008 GACCACAAACGAAAA GCCCGGGA TTGC TCCCGGGC TTTGGTGTGTCTGTG TERM 2349 2527027 - 2527008 - R 100 -15 -4.63479 | opp_overlap 2527008 GACCACAAACGAAAA GCCCGGGA TTGC TCCCGGGC TTTGGTGTGTCTGTG TERM 2350 2527042 - 2527095 + r 93 -19 -3.21912 | gap 3, opp_overlap 2527065 CTTTGGTGTGTCTGT GGCGATCCCGGGTCTGCGAAGCAGCAC GGC GTGCTGCATCGC-G-CCCGGGA-CGAC TTCGTCGCTTAGAAG groEL 2528744 - 2527104 - | chaperonin GroEL groES 2529164 - 2528850 - | co-chaperonin GroES TERM 2351 2529051 - 2529063 + g 83 -9.1 -4.41494 | overlap 2529047 AACGGCGACGATTTC GCCCT GCG AGGGC TTTTCCTTGGCGCTG RPE_2285 2529483 - 2529782 + | hypothetical protein RPE_2286 2529850 - 2530113 + | hypothetical protein RPE_2287 2530141 - 2530797 + | hypothetical protein RPE_2288 2532051 - 2530801 - | Na+ dependent nucleoside transporter TERM 2352 2532483 - 2532471 - g 71 -9.1 -3.78934 | CGCTTTGCAGAACAA CGCCA ATC TGGCG CGCGCCTTCGAAGAA TERM 2353 2534448 - 2534404 - g 77 -12.9 -3.57144 | gap 2, overlap 2534390 2534405 CCCGTCACCGGCAAA CCGCTG-GCCGCGGCGCT-GC TGCGC GCGACCACCGCGGCGCAGCAG GAAAAACTGATCGCG RPE_2289 2532277 - 2534466 + | periplasmic sensor hybrid histidine kinase RPE_2290 2535927 - 2534710 - | acyltransferase 3 TERM 2354 2535732 - 2535700 - G 71 -2.7 -4.59109 | gap 1, overlap 2535701 2535702 GAGATGGGCGAAAAA GCCCGCGACGACGA AGAATG TCGTCATC-CGGAA AGTGTGGGACACGAA RPE_2291 2536923 - 2536165 - | short-chain dehydrogenase/reductase SDR TERM 2355 2536877 - 2536835 - G 100 -11.9 -4.68994 | gap 1 AGCACCACGGAAAAA CCGGCTTTCAGCAGCGCCAG CGCG CTGGCGCGTCCG-ACGCCGG AACCGGCGCCGGTGA TERM 2356 2537346 - 2537321 - H 74 -6.1 -4.46212 | TTCGCCAGCAGAAAA CAGCCTGCG GGATACAG CGCAAGCCG CTCGGCGAACACCGC RPE_2293 2537677 - 2538717 + | transposase IS116/IS110/IS902 family protein TERM 2357 2538754 - 2538722 - T 91 -19.1 -2.87211 | overlap 2538700 2538740 2538741 ACGCCGCCTGAGAGA TCGGCCGGCAGGCGA CAA TCGCCTGGCGGCCGG GCCGGAGCTGCAAGA RPE_2294 2539820 - 2539074 - | putative proteasome-type protease RPE_2295 2540756 - 2539908 - | transglutaminase domain-containing protein RPE_2296 2541750 - 2540806 - | hypothetical protein TERM 2358 2541782 - 2541823 + r 71 -13.1 -3.06183 | opp_overlap 2541779 2541783 2541787, overlap 2541787 2541791 GCGAGGAGCGAAGCG ACGAAGCAATCCAGTCTGC GCTC GCGAATTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 2359 2541822 - 2541783 - R 74 -14.4 -2.55544 | opp_overlap 2541782 2541787 2541791, overlap 2541779 2541787 CGAGGAGCGAAGCGA CGAAGCAATCCAGTCTGC GCTC GCGAATTGGATTGCTTCG CTTCGCTCGCAATGA RPE_2297 2543377 - 2541860 - | hypothetical protein TERM 2360 2542228 - 2542259 + g 71 -2.9 -4.59773 | gap 2, opp_overlap 2542220 GCACATAGGCCAGAT CG-GCCG-CCTCACG GCAG CGCCAGGTCGGCACG TTTTTCAGGATCGGC TERM 2361 2542860 - 2542824 - G 85 -8 -4.74706 | gap 1, overlap 2542825 2542826 TCCAAGACGTAAAAA TGGTCGGCATCGAC-CC GGAC GATGTCGATGCCGGCGA TGTGGACGTAAATGT RPE_2298 2543499 - 2544236 + | molybdopterin binding domain-containing protein RPE_2299 2544250 - 2544768 + | xanthine-guanine phosphoribosyltransferase RPE_2300 2545050 - 2545667 + | hypothetical protein RPE_2301 2546840 - 2545818 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 2362 2547229 - 2547248 + G 79 -3.4 -5.00616 | opp_overlap 2547242 2547243, overlap 2547231 2547231 GCGATCCTGATCTAT CTGGCGGA AAAA TCCGGCCG TTTTTTGCCGACCGA RPE_2302 2546995 - 2547705 + | glutathione S-transferase RPE_2303 2547869 - 2548552 + | DSBA oxidoreductase RPE_2304 2548552 - 2549529 + | alcohol dehydrogenase TERM 2363 2549575 - 2549628 + T 77 -13.2 -3.61715 | gap 3, overlap 2549580 GTGGCCCGGCGAAGC CGGGTCGGGTGGGGGTGCCACGGATGC AGT GC-T-CGTGGT-CCCCCACCCGTCATG TTGTTCGCAGCGCTC TERM 2364 2549580 - 2549623 + T 87 -16.9 -2.85545 | gap 3, overlap 2549575 CCGGCGAAGCCGGGT CGGGTGGGGGTGCCACGGATGC AGT GC-T-CGTGGT-CCCCCACCCG TCATGTTGTTCGCAG RPE_2305 2550612 - 2549722 - | enoyl-CoA hydratase TERM 2365 2549935 - 2549957 + g 71 -3.3 -4.57837 | overlap 2549937 2549952 CATCATTTGCCGGAT CAGCGCC ACCGACACC GGCGCGG TTTTTGCCGCGATCT TERM 2366 2550449 - 2550416 - G 72 -13.8 -2.94747 | gap 1, overlap 2550398 2550433 GCACCGGAGGAGAGA TCGGCGCCGG-CGCA GAAGG CGCGGCCGGCGCCGG TGACGATCACCGCGC TERM 2367 2550477 - 2550433 - G 71 -12.8 -3.28712 | gap 2, overlap 2550416 GGCGCCGGCGCAGAA GGCG-CGGCCGGCGC-CGGTGA CGA TCACCGCGCGCACGCCGTCGTC GCGATCGGCACGGTC TERM 2368 2550721 - 2550750 + H 70 -7.7 -4.05788 | gap 1, overlap 2550716 GGCGGCTCAACCGGC GGCGC-GGCGCGAG GGC CATGCGCCAGCGGC TTTGCTTTGCGCCGC TERM 2369 2550953 - 2550969 + H 76 -13.7 -3.14564 | AATCATCTCTGGTCC GCGCTCC GAT GGAGCGC TTCATAGCCAAGTGC TERM 2370 2551357 - 2551399 + H 100 -17.9 -3.66178 | gap 2 CCACGCCGAGATCCC GACCCCGCCGGGCTGAACG CCGCCCC CGT-CAGCCC-GCGGGGTC TTTCGGCTTGGAGGC TERM 2371 2551638 - 2551626 - H 78 -3.3 -4.99861 | overlap 2551628 TATCAAGGATAAAAA CGCTG GAG CACCG TCTCCGGGCCGGCCG TERM 2372 2551707 - 2551673 - H 74 -9.3 -3.94402 | gap 1, opp_overlap 2551663, overlap 2551663 AGAACGGCCAAAGAA GGACGGCCGC-ACGAG GTGC CTCATTGCGGTCATCC GACCGTGGCCTTTAC RPE_2306 2551755 - 2552165 + | hypothetical protein RPE_2307 2553378 - 2552185 - | salicylate 1-monooxygenase TERM 2373 2552422 - 2552400 - G 75 -9 -4.07568 | overlap 2552401 CGGCCGGGTCGAAAA CCTCGCCGAG CTG CGCGGCGAGC ACCGCGGCGTCCTCG RPE_2308 2553630 - 2553385 - | hypothetical protein TERM 2374 2553689 - 2553665 - H 74 -12.9 -3.27029 | opp_overlap 2553659 2553658 2553656 2553667, overlap 2553663 CGCGACGAACGAAGA CAGCATGGCGC AAC GCACCATACTG TTCACGGTTCTTGAT TERM 2375 2554584 - 2554604 + G 73 -11.1 -3.63515 | opp_overlap 2554596 2554598 GTCGGCGGGGCCTTT CGCGCCG AAAAAGC CGGCGCG TTGTTGCGCGTCGCC TERM 2376 2554619 - 2554596 - g 74 -5.1 -4.56597 | opp_overlap 2554584, overlap 2554598 TTTCGCGCCGAAAAA GCCGGCGCG TTGTTG CGCGTCGCC AAGGATGTCGGGCGG RPE_2309 2553843 - 2555021 + | hypothetical protein TERM 2377 2555138 - 2555153 + G 72 -6.8 -4.18018 | overlap 2555139 GCGAGGGCGAGCCGA TCGTGC TGGT GCACGG TTTTGCGTCGAACAA TERM 2378 2555257 - 2555215 - g 72 -6.9 -4.1822 | gap 1 TCGGAGTTGAAGAAA CACGGCCGCCGCG-TCATCG CCTT CGACCATCGCGGCCACGGTG CCTCCAGCAAGCTGT RPE_2310 2555062 - 2555826 + | alpha/beta hydrolase fold RPE_2311 2557193 - 2555784 - | hypothetical protein TERM 2379 2556567 - 2556535 - G 74 -7.5 -4.16943 | overlap 2556515 2556536 CCCGACAGCGCAAAA TTCGCCGCCAGCAGC ATC GCCGCCGACAGCGCC AGCGCGGCGAAGCCG RPE_2312 2557443 - 2558270 + | serine O-acetyltransferase RPE_2313 2558415 - 2558633 + | hypothetical protein RPE_2314 2559364 - 2558651 - | hypothetical protein TERM 2380 2559684 - 2559712 + G 78 -16 -3.18681 | gap 1, opp_overlap 2559679, overlap 2559684 TGCTGGAAGACCGCG CGGCGCCGC-GCG CGCT CGCTGCGGTGCCG TTCCTGGCCTTCGCC RPE_2315 2559557 - 2559886 + | hypothetical protein TERM 2381 2560430 - 2560441 + G 77 -7.2 -4.57353 | overlap 2560419 2560428 GTCGCGGCGATGACC GCCG GCGC CGGC TTTTATGTGCTGAAC RPE_2316 2559965 - 2560495 + | hypothetical protein TERM 2382 2560524 - 2560501 - T 78 -14.6 -3.05596 | gap 1, opp_overlap 2560496 2560494, overlap 2560486 2560489 GATCGGCTGAGCCAA GCCGGAGCGCG CGA CGCGCTC-GGC TATCCCTCTGATTCG RPE_2317 2560682 - 2560524 - | hypothetical protein RPE_2318 2560897 - 2560679 - | hypothetical protein TERM 2383 2560997 - 2561024 + r 93 -20.6 -3.0806 | opp_overlap 2560997, overlap 2560986 2560999 ATCCACGCAAAGAAA GACCCCCGGCGG GGCA TCGCCGGGGGTC TCTTGGAGGTTTACA TERM 2384 2561024 - 2560997 - R 100 -19.9 -4.46514 | opp_overlap 2560997 2560986 2560999 ATCCACGCAAAGAAA GACCCCCGGCG GGGCAT CGCCGGGGGTC TCTTGGAGGTTTACA TERM 2385 2560999 - 2561022 + r 88 -17.4 -3.09581 | opp_overlap 2560997, overlap 2560997 2560986 CCACGCAAAGAAAGA CCCCCGGCGG GGCA TCGCCGGGGG TCTCTTGGAGGTTTA RPE_2319 2562574 - 2561096 - | porin TERM 2386 2562541 - 2562501 - G 70 -13.2 -3.05844 | gap 1, overlap 2562478 GCCTTGAGGGGAAGA TCGGCTGCCTGCG-CGCCA GCGG TGGCGACGAAGGCCGCCGC GGTGCCGAGCATAAG TERM 2387 2562601 - 2562582 - H 71 -5.6 -4.37534 | AAAGTCATAGTAAAA CCTCCAAG TTTG CCTGGTGG ATCCGCCATCCGGCG TERM 2388 2562866 - 2562895 + H 71 -13.5 -2.63752 | overlap 2562865 2562863 2562858 AGAGAATTGTGGAAG GGGAGGTGCGCGC ACCC GCGCGAACCTCGC ATCTTGTCTCATTTT TERM 2389 2563046 - 2563074 + H 76 -8.8 -4.11394 | overlap 2563030 CCGGTGTCAGTTTGT GCTGACGGCG GCTTGGATG CGCCGCCAGC TTTTAGGCCTGGGCT TERM 2390 2563249 - 2563289 + G 74 -12.6 -3.53444 | gap 2, opp_overlap 2563257 2563258 CGAACCGAGAGCTTC GGCCGAAATCGCGCAGGCCG CGC CGGGC--CGCGATTACGGCC TTTCCCACCAGATCA RPE_2320 2563187 - 2563744 + | MarR family transcriptional regulator RPE_2321 2563767 - 2564009 + | hypothetical protein RPE_2322 2563990 - 2564259 + | hypothetical protein RPE_2323 2564923 - 2564252 - | autoinducer synthesis protein TERM 2391 2564924 - 2564954 + r 77 -13.3 -3.64822 | opp_overlap 2564923 AATAACGTGAATCAC GTTCGCCTCCCCT GATCG AGTGGAGGCGAGC TTTCCCTGAAACAAT RPE_2324 2565757 - 2565017 - | LuxR family transcriptional regulator TERM 2392 2566108 - 2566072 - R 95 -10.9 -4.62069 | gap 1, overlap 2566075 2566076 TCCGCATCCCAAAAA GAATGCGGCCAGCTCT TGGGGG AGAGCTGGCCGC-CAC GATCCGGTCTGGGAC TERM 2393 2566106 - 2566075 - R 100 -15.9 -4.42748 | overlap 2566072 2566076 GCATCCCAAAAAGAA TGCGGCCAGCTCT TGGGGG AGAGCTGGCCGCC ACGATCCGGTCTGGG TERM 2394 2566105 - 2566076 - R 93 -19.4 -3.24926 | overlap 2566075 2566072 CATCCCAAAAAGAAT GCGGCCAGCTCT TGGGGG AGAGCTGGCCGC CACGATCCGGTCTGG RPE_2325 2566820 - 2566197 - | transglutaminase-like cysteine peptidase, BTLCP RPE_2326 2567819 - 2567151 - | type IV pilus assembly PilZ RPE_2328 2570083 - 2570814 + | cyclic nucleotide-binding protein RPE_2329 2571375 - 2570827 - | hypothetical protein TERM 2395 2571694 - 2571718 + H 100 -16.5 -4.7254 | opp_overlap 2571694 CGCCGACGGCATCAA GGGCAGGAGTT CTC AGCTCCTGCCC TTTTTCGTGCCCGGT TERM 2396 2571718 - 2571694 - H 80 -14.3 -3.16564 | opp_overlap 2571694 CGCCGACGGCATCAA GGGCAGGAGTT CTC AGCTCCTGCCC TTTTTCGTGCCCGGT TERM 2397 2571736 - 2571753 + H 95 -11.3 -4.49556 | TTTCGTGCCCGGTTC GAGCTGC GCCG GCAGCTC TTTGTTTCGTGGCGC TERM 2398 2571820 - 2571838 + H 100 -17.4 -3.63991 | CCGCGCTCGGCTTGC GCGCGCCG GCC CGGCGCGC TTATTGGGGCTCATC TERM 2399 2572183 - 2572211 + G 70 -10.1 -3.70033 | TGCCGTTCGGCAGCG CCTTGGCGCGGCG GTT CGGCGCGCTGCGG TTCTATGTGTTCATG RPE_2330 2571888 - 2572643 + | rhomboid-like protein RPE_2331 2572872 - 2573300 + | signal-transduction protein RPE_2332 2574346 - 2573324 - | patatin TERM 2400 2573497 - 2573451 - G 91 -11.5 -4.25104 | overlap 2573452 2573489 2573491 2573492 TCGGCGCGATGAAAA TCGAACCAGCCGATCTTGCCG ACACG CGGCGAGATCAACAGGTCCGG CGGATCGCCGGCGAG TERM 2401 2573496 - 2573452 - G 76 -15 -3.14848 | overlap 2573451 2573489 2573491 2573492 CGGCGCGATGAAAAT CGAACCAGCCGATCTTGCCG ACACG CGGCGAGATCAACAGGTCCG GCGGATCGCCGGCGA TERM 2402 2573636 - 2573683 + g 73 -14.1 -3.14211 | gap 2, opp_overlap 2573630 2573633 CGGCGAGAAGAACCG GCCGATGCCGCGCTTCGGCGCCG GCTC CGGCTCCGGCGC-CGG-GTCGGC TTCGTCGAGCGGCGT TERM 2403 2574249 - 2574233 - G 71 -9.3 -3.81951 | GCCGATATGAGCAAA GCCGCGC GCG GCGCCGC CGCCCAGCGCCAGCC TERM 2404 2574430 - 2574416 - H 78 -7 -4.57353 | overlap 2574418 TTCCATGACATAAAA GCCGGC ATT GCCGCC GCATCGATCTGCCAG RPE_2333 2574536 - 2575609 + | hypothetical protein TERM 2405 2576462 - 2576426 - g 75 -15.8 -2.73364 | gap 1 CGTGCATCTCAACCA GGGCGCGGCGCGGCTGC TCGG GCAGCC-CGCCGCGGCG CTGCAATGGAGCCAG TERM 2406 2576764 - 2576789 + G 74 -10.3 -3.87815 | opp_overlap 2576753 ACGACGCCGCGGTCC GGCACTACGGC TTCA GCCGCAGCGCC TTTCTCGGCATGAAA TERM 2407 2577920 - 2577932 + G 84 -9.1 -4.56597 | overlap 2577902 GCTCGAACTCGAGAT CACCG AGT CGGTG TTTTTGGCCGAGACC RPE_2334 2575821 - 2578325 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) RPE_2335 2578893 - 2578330 - | nitroreductase RPE_2336 2579288 - 2579070 - | hypothetical protein thrS 2581324 - 2579285 - | threonyl-tRNA synthetase RPE_2338 2582580 - 2581531 - | hypothetical protein TERM 2408 2582187 - 2582203 + g 74 -2.1 -4.72272 | opp_overlap 2582178, overlap 2582179 CATGAACGGCGTGTC GCCGCTG CCT CATCTGC TTTTTCGTCGCGGCA TERM 2409 2582799 - 2582839 + G 75 -6.8 -4.36595 | gap 2, overlap 2582800 TCACCGGCACCGCGG TGCTGGCGCCGG--CCGGCA TGC TGCCGGAATTGGCGGCGGCG TTTTCCGTTTCGATC RPE_2339 2582768 - 2583892 + | major facilitator transporter RPE_2340 2584584 - 2583922 - | O-methyltransferase family protein TERM 2410 2585022 - 2585055 + G 73 -14.6 -2.87132 | gap 1 GAATGCGACGAGGCC GCGGTGC-GCGTCGC GCTGG GCGATGCCGCGCCGC TGTATCGCGACGCCC RPE_2341 2584677 - 2585309 + | TetR family transcriptional regulator RPE_2342 2585302 - 2585721 + | hypothetical protein RPE_2343 2586047 - 2585718 - | hypothetical protein TERM 2411 2586537 - 2586559 + G 71 -14.8 -2.52464 | TGCCCGCGGCCGCAA GCTCGACGGC GCC GCCGTCGTGC TCGATTCCAGCGGCG RPE_2344 2586157 - 2587215 + | hypothetical protein RPE_2345 2587331 - 2587993 + | hypothetical protein RPE_2346 2587993 - 2588286 + | hypothetical protein RPE_2347 2588778 - 2588299 - | NifU domain-containing protein TERM 2412 2588446 - 2588485 + g 72 -5.5 -4.41494 | opp_overlap 2588448, overlap 2588448 2588474 GCGCACCGGTTCCAA CAGCGCCACGTCGGC CCATTTGCCC GCGGGCGGGGCGCCG TTTTCCTTCAACATC TERM 2413 2589235 - 2589196 - g 72 -8.5 -4.10657 | gap 1 CTATATCGGCGAAAA CACCGAGCGCGAAG-GCC TGCTC GACACCCCGCGCCGGGTG GTCGAGGCCTATGAC RPE_2348 2589017 - 2589697 + | GTP cyclohydrolase I TERM 2414 2590248 - 2590215 - g 78 -15.3 -3.14132 | gap 1, opp_overlap 2590226 CGCGGTCTGGATCAA GGTGGAGCAGGGCGGC GGC GCCGCC-TGCCACACC GGCCGGCGCTCCTGC hisI 2589916 - 2590359 + | phosphoribosyl-AMP cyclohydrolase RPE_2350 2590754 - 2590389 - | cytochrome b5 RPE_2351 2592016 - 2590751 - | ferric reductase domain-containing protein RPE_2352 2592327 - 2592022 - | hypothetical protein RPE_2353 2593124 - 2592453 - | hypothetical protein TERM 2415 2593417 - 2593444 + G 73 -6.1 -4.40237 | opp_overlap 2593417 CGCCGGCGCGATCAA GCAGGCGTCGG GTTCGA CCGGCACCAGC TTTTCCTATCTGCTC RPE_2354 2593343 - 2594392 + | hypothetical protein TERM 2416 2594439 - 2594472 + F 88 -17.5 -3.02511 | gap 1 TTCGCATCGTCATTC CGGG-GCGTTCGCAGC ACC GCTGCGAACGAACCCG TATTCCCGAGGTGAC TERM 2417 2595798 - 2595818 + G 74 -12.5 -3.53091 | GAAGCGCGCCGGCCT GCCGGAAGC GAC GCATCCGGC TTTCCGCGCGGCGCT RPE_2355 2594899 - 2596074 + | hypothetical protein RPE_2356 2596915 - 2596337 - | Hpt protein TERM 2418 2596936 - 2596950 + r 100 -12.8 -4.56597 | opp_overlap 2596929 CTCCAGAACGGGCTA GCCCGC GAC GCGGGC TTTTTCGAGAAGCGA RPE_2357 2597478 - 2596933 - | response regulator receiver protein RPE_2358 2597754 - 2599517 + | diguanylate cyclase TERM 2419 2599714 - 2599661 - T 76 -8.2 -4.17048 | gap 3 GCCCGCGGAAAACAA GCAGCTGAGCAGGCGAATTGGCCCCGC AAC GCGCAGCCAA-TC-CCGGC-CAACCGC CTGATCCGCCGTCGG ppnK 2600530 - 2599751 - | inorganic polyphosphate/ATP-NAD kinase RPE_2360 2601208 - 2600648 - | TPR repeat-containing protein TERM 2420 2601029 - 2601041 + g 89 -3.3 -5.29445 | opp_overlap 2601017, overlap 2601026 GAAGCGGTCGTCATC GCGCT GCG AGCTC TTTTTCTTCTTGCCC TERM 2421 2601773 - 2601783 + G 72 -8.2 -4.11484 | opp_overlap 2601756, overlap 2601769 GACGATCCCCCCTGC GCCG GCG CGGC TTTTGCGCCGTTCCC RPE_2361 2601410 - 2601823 + | hypothetical protein TERM 2422 2602018 - 2602043 + G 71 -12.5 -3.35046 | overlap 2602004 2602016 GCCGCTGTGATTGCG TTCGCGGCGCC CGCA GTCGCCGCGGA TATTTCGGCGCGTCC RPE_2362 2601979 - 2602686 + | OmpA domain-containing protein TERM 2423 2602712 - 2602730 + F 89 -13.1 -4.13767 | opp_overlap 2602712 TCGCGACGAGAAAAA GGCCGGC CTCGC GCCGGCC TTTTGCCGTGCCGGC TERM 2424 2602730 - 2602712 - f 100 -13.1 -4.91109 | opp_overlap 2602712 TCGCGACGAGAAAAA GGCCGGC CTCGC GCCGGCC TTTTGCCGTGCCGGC TERM 2425 2602847 - 2602822 - f 74 -5.3 -4.58283 | gap 1, overlap 2602825 GAATCCGCGGAAAAA TAAGCCGCG-GG ACT CCGCGCGGCGAA TCGCCCGATGCTGCA TERM 2426 2602844 - 2602825 - f 95 -11.4 -4.40561 | gap 1, overlap 2602822 TCCGCGGAAAAATAA GCCGCG-GG ACT CCGCGCGGC GAATCGCCCGATGCT TERM 2427 2603103 - 2603120 + F 84 -14.1 -3.82202 | CCGGGTGAGCGGCCG GCGCCGC CGAG GCGGCGC TTGTATTTCCCCGTC RPE_2363 2603270 - 2603479 + | cold-shock DNA-binding domain-containing protein RPE_2364 2603579 - 2603818 + | hypothetical protein RPE_2365 2603851 - 2604051 + | hypothetical protein RPE_2366 2604544 - 2604194 - | hypothetical protein RPE_2367 2605868 - 2604669 - | protein of unknown function DUF303, acetylesterase putative TERM 2428 2606034 - 2606079 + G 70 -6 -4.25283 | overlap 2606035 GTCGTGCTGCTGCTT GCGGCCGCGACGCTCG-GACCG GCGC TGGGCGCGA-TGACGCGGCCGA TTTTCGTCGCCGGAT RPE_2368 2605956 - 2607371 + | hypothetical protein RPE_2369 2608451 - 2607390 - | acyltransferase 3 RPE_2370 2609090 - 2609551 + | hypothetical protein TERM 2429 2609615 - 2609666 + G 95 -7 -5.40072 | gap 1, opp_overlap 2609605 2609602, overlap 2609616 2609617 CAGGATTGGCGGCAG TGGCCGCC-CTCGTCACCGTGAGCG CGG CGCCGGCGATGGCGTGCGGCGGCGG TTTTTTTGCCAGCGG RPE_2371 2609581 - 2610087 + | hypothetical protein TERM 2430 2610102 - 2610142 + F 100 -22.7 -3.53012 | gap 1 ATCGGCTCGATCCCT CGGC-ACGCCCGTCCGCA CCCCGT TGCGGGCGGGCGTTGCCG TTTCCGCCGCCCGGA RPE_2372 2610272 - 2611438 + | acetyl-CoA acetyltransferase RPE_2373 2611466 - 2612995 + | AMP-dependent synthetase and ligase TERM 2431 2612996 - 2613053 + T 100 -21.5 -3.18274 | gap 3, opp_overlap 2612996 ATGCTGAAGGACTAA CC-GTGTCCCGGA-C-GCGCTGCAGCGT TCTTC ACGCTGCGGCGCAGATCCGGGACCCCGG TTCGGTTGCGCTCAA TERM 2432 2613052 - 2612996 - T 95 -19.5 -3.27476 | gap 2, opp_overlap 2612996 ATGCTGAAGGACTAA CCGTGTCCCGGA-C-GCGCTGCAGCGT TCTTC ACGCTGCGGCGCAGATCCGGGACCCCG GTTCGGTTGCGCTCA RPE_2374 2614473 - 2613139 - | hypothetical protein TERM 2433 2616051 - 2616007 - g 80 -14.2 -3.68351 | CGGGCACGACCGAAA TGCTGAACGAGGCCGACAGC CTGGC GCTGCTGGCCTCGCGCGGCA TCCCGGTGGTGCCGC RPE_2375 2614572 - 2616656 + | CoA-binding domain-containing protein TERM 2434 2617438 - 2617428 - g 72 -8.2 -4.07568 | opp_overlap 2617428 2617430 2617432, overlap 2617429 CCCGTCCCCCGAAAA GGCG GCG CGCC GCGTGCTGTATGTCG RPE_2376 2616733 - 2617608 + | short-chain dehydrogenase/reductase SDR RPE_2377 2618645 - 2619406 + | hypothetical protein RPE_2378 2619966 - 2619742 - | biotin/lipoyl attachment domain-containing protein TERM 2435 2620046 - 2620027 - H 89 -11.4 -4.38712 | overlap 2620040 GGTATTGCGATAAAA TCCGCGGC GAAA ACCGCGGA TCGAGGCGGGGTGCC TERM 2436 2622310 - 2622340 + G 72 -11.8 -3.59979 | opp_overlap 2622303 2622306 GAACCAGACCACGGT GCCGTGGTGCACGA TCA TCGTGCGCAACGCC TTTGGCGTCGCCGGC RPE_2380 2621114 - 2622670 + | propionyl-CoA carboxylase TERM 2437 2622730 - 2622689 - f 81 -15.9 -3.00946 | gap 1, opp_overlap 2622701, overlap 2622686 GCGCGCCACAAAGGA GCCGTCGCATGATTCC-CGA GGT CCGCGGAAACATGCGGCGGC GGTCGGGAATTAGTG TERM 2438 2623045 - 2623007 - g 86 -16.7 -3.53811 | gap 1, opp_overlap 2623000 2622998, overlap 2623008 2623010 CGCATTGGCGGCAAA CCACCGCCGAGCTGCCGC CGGA GCGGCGGCT-GGCGGCGA TCGTGGAGTCCTATC TERM 2439 2623044 - 2623008 - g 85 -18 -2.72144 | gap 1, opp_overlap 2623000 2622998, overlap 2623007 2623010 GCATTGGCGGCAAAC CACCGCCGAGCTGCCGC CGGA GCGGCGGCT-GGCGGCG ATCGTGGAGTCCTAT TERM 2440 2623042 - 2623010 - g 82 -17 -2.90615 | gap 1, opp_overlap 2623000 2622998, overlap 2623008 2623007 ATTGGCGGCAAACCA CCGCCGAGCTGCCGC CGGA GCGGCGGCT-GGCGG CGATCGTGGAGTCCT RPE_2381 2622781 - 2623464 + | TetR family transcriptional regulator TERM 2441 2623791 - 2623779 - g 72 -6.9 -4.18018 | CGCGGCGATCGAAAA CGCCA AGG CGGCG CAGGTCGAGTGGGGC TERM 2442 2624672 - 2624690 + G 78 -10.2 -4.13767 | opp_overlap 2624663, overlap 2624673 AGGAAGGCGCCACGC TCGCGGTC GAC GGCCGCGG TTTTAAGATGCAGGG RPE_2382 2623633 - 2625129 + | methylmalonate-semialdehyde dehydrogenase RPE_2383 2625164 - 2625391 + | hypothetical protein RPE_2384 2625445 - 2625816 + | PilT protein-like protein RPE_2385 2625813 - 2626961 + | acyl-CoA dehydrogenase domain-containing protein TERM 2443 2627381 - 2627404 + G 95 -9.6 -5.04987 | gap 1, overlap 2627381 2627382 GACAAGACCAGGATC G-CGATGCCGG AAG TCGGCATCGGC TTTTTTCCCGATGTT RPE_2386 2626958 - 2628043 + | enoyl-CoA hydratase TERM 2444 2628198 - 2628143 - g 72 -11.9 -3.55622 | gap 3, overlap 2628144 GCCAATCTGGTGAAA GCCGGCCACGCCGTGACG-GGCTTCGAC CTG GTCGAAGCCTCG-CGCGACGCGG-CGAA GGCCGACGGCGTCGC TERM 2445 2628197 - 2628144 - g 75 -15.4 -2.73159 | gap 3, overlap 2628143 CCAATCTGGTGAAAG CCGGCCACGCCGTGACG-GGCTTCGAC CTG GTCGAAGCCTCG-CGCGACGCGG-CGA AGGCCGACGGCGTCG RPE_2387 2628077 - 2628964 + | 3-hydroxyisobutyrate dehydrogenase RPE_2388 2629140 - 2630864 + | AMP-dependent synthetase and ligase RPE_2389 2630944 - 2631438 + | dehydratase RPE_2390 2631457 - 2632374 + | short-chain dehydrogenase/reductase SDR TERM 2446 2632437 - 2632477 + F 91 -19 -2.98823 | gap 1 ACCCCTTCGGCGTCA TTCCGGG-GCGCGCGCCGC GATA GCGGCGGGCGAACCCGGAA TCTCTCTCGAGAACA TERM 2447 2632733 - 2632753 + G 74 -2.4 -4.72272 | overlap 2632734 ACCGTCTATGACGCC ATGGCGGC GCCGG GCCGCAAA TTTTTGCTCGCGGGC TERM 2448 2633786 - 2633839 + G 72 -5.1 -4.3255 | gap 1, overlap 2633778 2633793 CCGACCGGCGGCTAT CTGCTG-ACCGCGTGTTTTGCCACCG GTG CGGCGGCGGGACGCGGGGTGTTGAAG TTTCTTGCTTCAGCC TERM 2449 2633793 - 2633831 + G 72 -13 -3.15197 | overlap 2633778 2633786 GCGGCTATCTGCTGA CCGCGTGTTTTGCCACCG GTG CGGCGGCGGGACGCGGGG TGTTGAAGTTTCTTG RPE_2391 2632625 - 2633857 + | hypothetical protein TERM 2450 2633898 - 2633950 + T 100 -17 -4.07687 | gap 1, overlap 2633925 TCACAACAGTCCTCT CTTCGTCATTCCGGG-ATGCGCGCC GCTT GGCGCGCAGACCCGGAATCTCGCAG TTTTGGAAGAAAGAT TERM 2451 2634006 - 2633963 - T 93 -13.8 -4.1552 | gap 1, opp_overlap 2633925, overlap 2633965 CAGTTTTGGAAGAAA GATTCCGGGTTCGCGCGCCGC TTC GCTGCACGCGC-CCCGGAATG ACGCGGGGAGAGGGA TERM 2452 2634004 - 2633965 - T 91 -16.4 -3.6761 | gap 1, opp_overlap 2633925, overlap 2633963 GTTTTGGAAGAAAGA TTCCGGGTTCGCGCGCCGC TTC GCTGCACGCGC-CCCGGAA TGACGCGGGGAGAGG RPE_2392 2635850 - 2634030 - | ABC transporter related TERM 2453 2635642 - 2635618 - G 71 -2.7 -4.64657 | overlap 2635608 2635639 GCAAAGCCTGAAAAA TCCGGCTCCTG CGG CAGATAACGGA TGGTGGCACCGGGCT RPE_2393 2636413 - 2635856 - | hypothetical protein TERM 2454 2635987 - 2635950 - G 81 -8.3 -4.56597 | gap 1, opp_overlap 2635950 TCGCGCGGCGAAAAA CCGCGC-GGGCCGCCG GTGATCT CGCCGGCCGAGCGCAG ATCGGTCATCAGATT RPE_2394 2639594 - 2636553 - | outer membrane autotransporter TERM 2455 2637391 - 2637424 + g 70 -10.9 -3.6106 | gap 1, opp_overlap 2637361, overlap 2637392 GGATCGGTCGCCACC TGC-GCGCGGCTGCCG CTG CGGAATCCGCGCCGCG TTTCGAGCTGTTCAC TERM 2456 2638079 - 2638023 - G 73 -13.7 -3.15249 | gap 2, opp_overlap 2638023 2638022 CAGATCGCCGATGAA GGTGAG-CG-TACCGGCCGAGGTCCCG CTGGT CGGAATCCCGGCCGGCAGCGTCCCGCC ATTGTTGGCGATCAG TERM 2457 2638926 - 2638887 - G 81 -12.8 -3.78329 | gap 1, opp_overlap 2638919, overlap 2638890 2638891 CTGCATGAACGGAAA CAAGCCGAT-GCCGCGCGC ATT GCGCGCCGCGACCGGATCG GTGGTGCGGTCGTTG TERM 2458 2638923 - 2638890 - G 79 -10.9 -4.02051 | gap 1, opp_overlap 2638919, overlap 2638887 2638891 CATGAACGGAAACAA GCCGAT-GCCGCGCGC ATT GCGCGCCGCGACCGGA TCGGTGGTGCGGTCG TERM 2459 2638922 - 2638891 - G 72 -14.4 -3.00507 | gap 1, opp_overlap 2638919, overlap 2638890 2638887 ATGAACGGAAACAAG CCGAT-GCCGCGCGC ATT GCGCGCCGCGACCGG ATCGGTGGTGCGGTC TERM 2460 2639052 - 2639013 - G 73 -14.2 -3.09933 | gap 1, overlap 2638989 2638988 CTGCAACGGATTGAA GGCCTCGGCCGGCCAGGCC AGC AGCCCGGT-GGCCGAGGGC GTGACGCCGCCATAG TERM 2461 2639733 - 2639691 - R 73 -12.7 -3.14931 | TGCACTTTCGACTAA CCGGACGC-GTGCTGCGGTAC GTA ATACCGCCGCCCAGCG-CCGG ATCCGAAGATCAGCG RPE_2395 2640358 - 2639789 - | hypothetical protein TERM 2462 2640413 - 2640452 + r 91 -9.2 -4.4078 | gap 1, opp_overlap 2640403, overlap 2640416 CGAAATGGTCTGCAC CACGCTGCTCACCGGGCGC GTC GAGA-CGGTGGGCAGCTTG TTTTCCTTCACCAGG TERM 2463 2640416 - 2640449 + r 83 -9.5 -4.32402 | gap 1, overlap 2640413 AATGGTCTGCACCAC GCTGCTCACCGGGCGC GTC GAGA-CGGTGGGCAGC TTGTTTTCCTTCACC RPE_2396 2641396 - 2640392 - | polysaccharide deacetylase TERM 2464 2640830 - 2640856 + g 75 -5 -4.57882 | overlap 2640825 2640827 GTAGCCCTTCTCGAT CTCGTCGATCTG TTG CTGCTCGGTGAG TTTCTTGTTGTTGAG TERM 2465 2641485 - 2641496 + r 85 -5.8 -5.0133 | ATGCAGCCCCGCGGG TCCG GCAA CGGA TTTTTTCCCGAGGTC RPE_2397 2642124 - 2641549 - | glutathione peroxidase RPE_2398 2643713 - 2642202 - | hypothetical protein TERM 2466 2642363 - 2642386 + g 75 -13.1 -3.46602 | opp_overlap 2642350, overlap 2642375 GATCCAGCGCCTCCG CGGCGCTGC TCGGCT GCGGCGCCG TTGTCGTCTCGACGG RPE_2399 2643931 - 2644476 + | CreA family protein TERM 2467 2644523 - 2644488 - f 75 -12.1 -3.63569 | GTAAGGTGGCAACAA GTGA-GCTGGCAACCTT AAGC AAGGT-GCCAGCTTCAC GTAAGGCGGCTTCAA TERM 2468 2644698 - 2644665 - f 100 -17.5 -4.21936 | gap 1 GCCACAATTGGAAAA TGGTGCGGCTACCGCG GCT CGCGGTGGCCG-ACCA GCCGAACCAAGCCCT RPE_2400 2644839 - 2645384 + | hypothetical protein RPE_2401 2645411 - 2645818 + | hypothetical protein RPE_2402 2646509 - 2645865 - | putative signal transduction histidine kinase RPE_2403 2647039 - 2646743 - | hypothetical protein TERM 2469 2647225 - 2647256 + H 70 -11.6 -3.14344 | gap 1, overlap 2647253 TATCGATCTTGGCGC TGCGGCCATCGATCG CGC CGGTCG-TGGTCGCG TTGGTGCGGCGCGTG RPE_2404 2647391 - 2647789 + | hypothetical protein TERM 2470 2647855 - 2647822 - f 74 -5.3 -4.56775 | gap 1 ACCGCGGTCGAAAAA TGCGGCGCAGCAAAGT GTG ACTTTGCGCCGC-ACA ACCGCTGGGACGCCT RPE_2405 2648113 - 2648727 + | GCN5-related N-acetyltransferase TERM 2471 2648802 - 2648821 + T 100 -15 -5.03994 | opp_overlap 2648802, overlap 2648817 TGCCTCACGAAAAAA CGCCGGCT TTCG AGCCGGCG TTTTTGTATCTCGAG TERM 2472 2648821 - 2648802 - T 100 -15 -5.14563 | opp_overlap 2648802 2648817 TGCCTCACGAAAAAA CGCCGGCT TTCG AGCCGGCG TTTTTGTATCTCGAG RPE_2406 2649155 - 2648856 - | hypothetical protein TERM 2473 2649707 - 2649688 - g 82 -11.4 -4.14392 | gap 1, opp_overlap 2649692 CTGGAACCGGGAAAA GGCCGAGCG CAG CGC-CGGCC TGCGCACTTTTCCGC TERM 2474 2649692 - 2649714 + G 70 -6.2 -4.17023 | opp_overlap 2649688, overlap 2649709 AACCGGGAAAAGGCC GAGCGCAG CGCCGGC CTGCGCAC TTTTCCGCTGGTTGC RPE_2407 2649563 - 2650087 + | MgtC/SapB transporter RPE_2408 2650560 - 2650090 - | hypothetical protein RPE_2409 2650686 - 2651576 + | Sel1 domain-containing protein RPE_2410 2651876 - 2651598 - | hypothetical protein RPE_2411 2651952 - 2652194 + | hypothetical protein RPE_2412 2652983 - 2652222 - | protein tyrosine/serine phosphatase RPE_2413 2653637 - 2653032 - | abortive infection protein RPE_2414 2653926 - 2653687 - | hypothetical protein TERM 2475 2653936 - 2653915 - G 86 -4.3 -5.20333 | gap 1, overlap 2653916 GATGCACAACAAAAA GGGCCGGAGC ATC GC-CCAGCCT ATCGCAGCCGCGCCG RPE_2415 2655433 - 2653994 - | multi-sensor signal transduction histidine kinase TERM 2476 2654053 - 2654099 + g 73 -13.7 -3.19668 | gap 1 GGCGCTGGTGCAGCG CTTCGGCGAGCGGCAGCGTG AAGCGGAA CGCGGTGCCGC-CGCCGGGG TTCGGTTCGGTCGTG RPE_2416 2655629 - 2656219 + | NADPH-dependent FMN reductase RPE_2417 2657248 - 2656283 - | cation diffusion facilitator family transporter RPE_2418 2657724 - 2658248 + | hypothetical protein TERM 2477 2658279 - 2658313 + F 89 -17.1 -3.14468 | gap 1, opp_overlap 2658273 CGCTAAGCACGATGC GGGCGGTCCGGGTCGC ACCA GCGGCCCGG-CCGACC TTCGGTATGGTACGG RPE_2419 2658412 - 2658675 + | hypothetical protein RPE_2420 2658986 - 2659198 + | antenna complex, alpha/beta subunit TERM 2478 2659734 - 2659755 + T 83 -9.4 -4.25848 | gap 1, overlap 2659725 GCATGCCGTCCCGTT CCCGCGGCG CGTTT CGCC-CGGG TTTTGCTGAAACGTT RPE_2421 2660795 - 2660493 - | hypothetical protein TERM 2479 2661002 - 2660959 - R 100 -24 -3.05463 | gap 1, opp_overlap 2660961 2660969, overlap 2660969 AGCTTCGGCAGGTAA CCGG-CAGGAAGGCCGCTCCA GCA CGGAGCGGCCTTCCTGGCCTG ATGTGGCCAGCCTTA TERM 2480 2660961 - 2661000 + r 100 -24.5 -2.62263 | gap 1, opp_overlap 2660959 2660969, overlap 2660969 CTTCGGCAGGTAACC GG-CAGGAAGGCCGCTCC AGCAC GGAGCGGCCTTCCTGGCC TGATGTGGCCAGCCT TERM 2481 2660991 - 2660969 - R 89 -17 -3.16742 | opp_overlap 2660961 2660969, overlap 2660959 GGTAACCGGCAGGAA GGCCGCTCCA GCA CGGAGCGGCC TTCCTGGCCTGATGT TERM 2482 2660969 - 2660991 + r 86 -16.3 -3.1739 | opp_overlap 2660969 2660959, overlap 2660961 GGTAACCGGCAGGAA GGCCGCTCC AGCAC GGAGCGGCC TTCCTGGCCTGATGT RPE_2422 2661750 - 2661064 - | hypothetical protein TERM 2483 2661264 - 2661238 - G 70 -10 -3.72027 | ATTGGCGACGAACAA CGGCGCCAGCCA TAG CGCCCGACGCCG CCAGGCCTCGCGCAG RPE_2423 2662183 - 2661929 - | hypothetical protein RPE_2424 2662380 - 2662180 - | hypothetical protein RPE_2425 2662902 - 2662582 - | hypothetical protein TERM 2484 2662939 - 2662951 + r 78 -10.5 -4.08216 | GCTCGACGTGGGCAC GGCGC GAT GCGCC TTTTGCCCACCCTAC RPE_2426 2663230 - 2662985 - | hypothetical protein TERM 2485 2663365 - 2663377 + r 70 -10.5 -3.53811 | GCTGCGCGTGGGCAC GGCGC GAT GCGCC TTTGCCCACCCTACG RPE_2427 2664434 - 2663400 - | hypothetical protein TERM 2486 2664484 - 2664511 + r 81 -9.8 -4.18676 | opp_overlap 2664487, overlap 2664487 TTTGTTCACTTAATC AAAGGGCGGCGA AAAA TCGCCACCCTTC TTCTTTCGTTTGTAA TERM 2487 2664508 - 2664487 - R 86 -13.7 -3.93288 | opp_overlap 2664487 2664484 GTTCACTTAATCAAA GGGCGGCGA AAAA TCGCCACCC TTCTTCTTTCGTTTG TERM 2488 2664487 - 2664508 + r 84 -11.5 -4.18294 | opp_overlap 2664487, overlap 2664484 GTTCACTTAATCAAA GGGCGGCGA AAAA TCGCCACCC TTCTTCTTTCGTTTG TERM 2489 2664681 - 2664666 - R 81 -11.8 -3.95584 | TTGCTAGTAACGAAA CGCCGC AGTT GCGGCG AACTATGCGTGTCAG TERM 2490 2664782 - 2664815 + r 100 -23.3 -4.99435 | gap 1, opp_overlap 2664782 GGGCAGAATCAAAAA GCCCCTCGCT-TCCGG ATG CCGGAGAGCGAGGGGC TTTTTGATTCTTCAG TERM 2491 2664815 - 2664782 - R 100 -23.3 -4.93365 | gap 1, opp_overlap 2664782 GGGCAGAATCAAAAA GCCCCTCGCT-TCCGG ATG CCGGAGAGCGAGGGGC TTTTTGATTCTTCAG RPE_2428 2666434 - 2664872 - | hypothetical protein RPE_2429 2667856 - 2666741 - | hypothetical protein RPE_2430 2670000 - 2667838 - | integrase catalytic subunit RPE_2431 2670239 - 2670000 - | hypothetical protein RPE_2432 2670318 - 2670605 + | hypothetical protein RPE_2433 2672950 - 2672186 - | hypothetical protein RPE_2434 2673539 - 2673192 - | hypothetical protein TERM 2492 2674438 - 2674407 - g 70 -11.6 -3.43203 | gap 1, overlap 2674422 CGAGGACAATACGAA GCCGCCATCCGAAGA CGA TCGCCGGATGG-GGC CGGTGCCGCCAGCCA RPE_2435 2674165 - 2674563 + | transposase IS3/IS911 family protein TERM 2493 2674767 - 2674783 + G 77 -7.2 -4.53303 | TGTCTGTTCACGAAG CGGCTG GAGCG CGGCCG TTTTCTGTGGCCGTC RPE_2436 2674560 - 2674907 + | IS66 Orf2 family protein TERM 2494 2675296 - 2675274 - g 72 -5.4 -4.4078 | GGCCGCCAAGGAAAA GCGTGCACAG GCT CCACGCCCGC CCCGACGCCCGCTGC RPE_2437 2674981 - 2676567 + | transposase IS66 RPE_2438 2678156 - 2676801 - | hypothetical protein RPE_2439 2680826 - 2678844 - | ATPase central domain-containing protein TERM 2495 2680522 - 2680541 + g 73 -6.4 -4.30809 | opp_overlap 2680514, overlap 2680514 GATATTAGTCGCCAG GCGTCG TTAATGGT CGACGC TTTTCCTGCATCTTC RPE_2440 2681186 - 2680848 - | hypothetical protein RPE_2441 2681815 - 2681363 - | hypothetical protein RPE_2442 2682076 - 2682321 + | XRE family transcriptional regulator RPE_2443 2682568 - 2683581 + | hypothetical protein RPE_2444 2683578 - 2684066 + | putative threonine efflux protein RPE_2445 2684063 - 2685949 + | hypothetical protein TERM 2496 2686181 - 2686158 - f 100 -16 -5.25656 | gap 1, opp_overlap 2686153, overlap 2686159 AAAATCACGAAAAAA GCCC-GGCGGG CGG CCCGCCAGGGC TGAAGTCTTCGGGAG TERM 2497 2686179 - 2686159 - f 93 -16.1 -3.72953 | opp_overlap 2686153, overlap 2686158 AAATCACGAAAAAAG CCCGGCGGG CGG CCCGCCAGG GCTGAAGTCTTCGGG TERM 2498 2686964 - 2686997 + G 77 -8.1 -4.40358 | gap 1, opp_overlap 2686979 TGCCATATTGGCCAT CCTATGCCGAGATGAC GCC GTCAGCGCGGCG-AGG TTTTCTGGAGTGGAT RPE_2446 2686492 - 2688891 + | hypothetical protein RPE_2447 2688888 - 2690201 + | hypothetical protein RPE_2448 2690170 - 2692422 + | DEAD/DEAH box helicase domain-containing protein RPE_2449 2693693 - 2692803 - | hypothetical protein RPE_2450 2694138 - 2693857 - | hypothetical protein TERM 2499 2695717 - 2695739 + G 70 -2.6 -4.57569 | overlap 2695708 2695719 GCCACGCCGTCCGGC TTCGGGAGGT TGG ACCTGACGGA TTTTTACGCAGATCC RPE_2451 2695327 - 2696184 + | ABC-type phosphate transport system periplasmic component-like protein RPE_2452 2696181 - 2698520 + | diguanylate cyclase/phosphodiesterase RPE_2453 2698800 - 2698603 - | hypothetical protein RPE_2454 2699422 - 2698904 - | BLUF domain-containing protein TERM 2500 2699538 - 2699573 + r 70 -10.5 -3.54543 | opp_overlap 2699541, overlap 2699541 CCCAGCCCCTAGCTT AAATGTGGAATCGCC TTTTCC GGCGATTCCACATGG TTTCGGAGCATCCCT TERM 2501 2699541 - 2699570 + r 83 -16.6 -2.90813 | opp_overlap 2699541, overlap 2699538 AGCCCCTAGCTTAAA TGTGGAATCGCC TTTTCC GGCGATTCCACA TGGTTTCGGAGCATC TERM 2502 2699570 - 2699541 - R 91 -16.6 -3.60098 | opp_overlap 2699541 2699538 AGCCCCTAGCTTAAA TGTGGAATCGCC TTTTCC GGCGATTCCACA TGGTTTCGGAGCATC RPE_2455 2699923 - 2699636 - | hypothetical protein RPE_2456 2701672 - 2699939 - | hypothetical protein TERM 2503 2701746 - 2701769 + r 81 -7.4 -4.4009 | gap 1, opp_overlap 2701746, overlap 2701761 2701762 TCCACATTTAAGCTA GGGGCTGG-GA TAT TCTCCACCCCC TTTTCTAGGGTGCGG RPE_2457 2701987 - 2701724 - | hypothetical protein RPE_2458 2703739 - 2702039 - | methyl-accepting chemotaxis sensory transducer TERM 2504 2703409 - 2703428 + g 75 -13.6 -3.39803 | CCAGCTTTTCAGTGA CCGGATGC ATCA GCATCCGG TTCTGCATATCGATG RPE_2459 2704426 - 2706126 + | methyl-accepting chemotaxis sensory transducer RPE_2460 2706620 - 2708620 + | diguanylate cyclase/phosphodiesterase RPE_2461 2708643 - 2708795 + | pmethyl-accepting chemotaxis receptor/sensory transducer RPE_2462 2709692 - 2709333 - | hypothetical protein RPE_2463 2710858 - 2709956 - | metallophosphoesterase TERM 2505 2710465 - 2710475 + g 77 -3.2 -4.93877 | CACGAGCATACCAAG CTTC GAC GAGG TTTTGTTTGGTGAGA TERM 2506 2711675 - 2711689 + G 81 -5.6 -4.82901 | opp_overlap 2711678, overlap 2711676 AGCGTATCGTGGAGC AGACGC GCG GCGTCG TTTTTCTCGGCACCC TERM 2507 2712343 - 2712322 - g 72 -7.3 -4.19506 | ACCGCAATTCTAAAA GCTGCAAAT TGCC ATGTGCAGC CGTCTTCGGATGATC RPE_2464 2711290 - 2713314 + | hypothetical protein RPE_2465 2714287 - 2713562 - | hypothetical protein RPE_2466 2715214 - 2714318 - | hypothetical protein TERM 2508 2715031 - 2715020 - G 79 -4.4 -4.77036 | TTTTAGGACGAAAAA GATG TCGA CATC CTTCAACGGCTTAGT RPE_2467 2715714 - 2715214 - | hypothetical protein RPE_2468 2716187 - 2715711 - | hypothetical protein RPE_2469 2717107 - 2716184 - | ATPase central domain-containing protein TERM 2509 2716288 - 2716311 + g 75 -9.6 -4.11216 | TGGCCGTTTGCGGGC TGCTGGCCAA AGCG TTGGCCACCA TTTTGCGGATGGCGC TERM 2510 2717181 - 2717161 - R 83 -15.4 -3.15366 | overlap 2717153 GCGAAAATGGGAAGA GCCGCGCC CGGGC GGCGCGGC CGCTCGACTCATCCC RPE_2470 2717411 - 2717190 - | hypothetical protein RPE_2471 2717569 - 2717928 + | XRE family transcriptional regulator RPE_2472 2717925 - 2718446 + | hypothetical protein RPE_2473 2718462 - 2719934 + | exodeoxyribonuclease I RPE_2474 2721418 - 2720810 - | hypothetical protein TERM 2511 2721173 - 2721152 - G 70 -3.7 -4.45738 | gap 1 CACCCCAAGAACAAA TCCGATCGCC GCC GGCAA-CAGA ATGATTAGGGCCAGC TERM 2512 2721758 - 2721798 + r 100 -13.4 -5.02716 | gap 1, overlap 2721753 AACTTTGGGTTGCTT TG-AGGCATAGGTTGGCCG AATC CGGCCAACCTATGCGAGCA TTTTCATTTTTTTTT TERM 2513 2721910 - 2721961 + r 100 -14.4 -4.16842 | overlap 2721905 2721903 2721911 GGTTATCAGGCGGCG TATGGCGCTGCGCTATGCCGTCTG ATGT CAGACGGCATAGCGTTGGCCCAGG TTTCTTAGGCCTACC TERM 2514 2721911 - 2721960 + r 81 -15.7 -3.09784 | overlap 2721905 2721903 2721910 GTTATCAGGCGGCGT ATGGCGCTGCGCTATGCCGTCTG ATGT CAGACGGCATAGCGTTGGCCCAG GTTTCTTAGGCCTAC RPE_2475 2724310 - 2722151 - | hypothetical protein TERM 2515 2723356 - 2723328 - G 72 -7.3 -4.26188 | overlap 2723329 CGGATACACGCAAAA CCGGTCGCAAGGA TCT TCCTGACGGCCGA GGCCTGCTCGTCGGA TERM 2516 2723764 - 2723750 - G 70 -6.4 -4.20516 | GCGCCATGGAAGAAA TGGTAC AAG GCACCA CGGGTTTGCCCCGAG RPE_2476 2724774 - 2724307 - | hypothetical protein RPE_2477 2725301 - 2724777 - | hypothetical protein RPE_2478 2727337 - 2725319 - | phage integrase family protein TERM 2517 2726884 - 2726869 - G 76 -2.4 -4.89852 | overlap 2726871 CCATATCCAGAAAAA GGCGCG TCAA CACGAC GGAGACAGTGAGATC RPE_2479 2729204 - 2727315 - | hypothetical protein TERM 2518 2728143 - 2728155 + g 89 -2.6 -5.29716 | TATCTTGGCCGCGCC CTCG TCACT CGGG TTTTTCTTGTGTTCG TERM 2519 2728893 - 2728909 + g 77 -7.9 -4.41348 | CACGGCGGCCTTGGC TCGCCGG TAA CCGGAGA TTTGTTTCGGACCGA RPE_2480 2730492 - 2729242 - | phage integrase family protein TERM 2520 2729538 - 2729525 - G 79 -4.5 -4.82819 | TAGATCAGAAGAAAA CACGC GTGC GCATG CCGGCCTTTATGCGG RPE_2482 2732492 - 2732172 - | hypothetical protein RPE_2483 2732527 - 2735010 + | SMC domain-containing protein RPE_2484 2735034 - 2737646 + | ATPase domain-containing protein RPE_2485 2739645 - 2737735 - | ATPase central domain-containing protein RPE_2486 2739975 - 2740556 + | hypothetical protein RPE_2487 2740996 - 2741259 + | XRE family transcriptional regulator RPE_2488 2743339 - 2742272 - | hypothetical protein TERM 2521 2742534 - 2742552 + g 82 -11.8 -4.11216 | opp_overlap 2742533 GGTAAGGTTAAGTAG CATTCAGC CTC GCTGAATG TTTTCGACATAAACA TERM 2522 2743064 - 2743049 - G 75 -4.6 -4.66609 | overlap 2743050 CAGCCGATCGAAAAA TCCCGT CTGA ACGGGG AAAACGCGTTGGCTG TERM 2523 2743304 - 2743281 - G 74 -2.2 -4.84359 | overlap 2743282 GGATGTCCACAAAAA TCGCACGCTA TGGC TCGCGGGCGC GGTACTACTTTCTCG RPE_2489 2743946 - 2744797 + | hypothetical protein TERM 2524 2745122 - 2745106 - g 72 -5.1 -4.36914 | CCGGCTGCTACAAAA CGTCG AGAAGTA CGACG AATCTCGGCTTCCGA TERM 2525 2745396 - 2745365 - g 77 -10 -3.9009 | gap 1 AACGGACCGGAGAAA GGGCCGCAGCAGCCC GAT GGGTCGC-GCGGCGC GTCCAAGCCGGCACC RPE_2490 2745050 - 2745556 + | hypothetical protein RPE_2491 2745658 - 2746320 + | hypothetical protein TERM 2526 2746429 - 2746451 + T 75 -3.5 -4.88228 | gap 2, overlap 2746429 2746430 2746431 AATTCCAGCTATTTA CC--GTCCATG GCT CATGGACCTGG TTTTTGGTCTTGCAT RPE_2492 2747885 - 2746839 - | patatin RPE_2493 2748358 - 2747882 - | hypothetical protein RPE_2494 2749547 - 2748363 - | hypothetical protein TERM 2527 2750084 - 2750116 + G 100 -17.7 -4.07687 | opp_overlap 2750081 2750082 CACTCGTCGAAACCG CCGCCGATCCGGTCG AAA CGATCGAGTCGGCGG TTTTCCAGCAGCAAT RPE_2495 2749741 - 2750310 + | ECF subfamily RNA polymerase sigma-24 factor RPE_2496 2750307 - 2750744 + | hypothetical protein TERM 2528 2751060 - 2751045 - g 82 -4.6 -4.92239 | opp_overlap 2751053, overlap 2751055 CGAAAAATCGAAAAA CGCCGA ACGA TTGGCG GACGCCTATTCCGGC RPE_2497 2750746 - 2751513 + | hypothetical protein RPE_2498 2753935 - 2751599 - | hypothetical protein TERM 2529 2752944 - 2752930 - G 74 -12.8 -3.53091 | ACTGTTGGTTGCAAA GGCGCG ACA CGCGCC GCGGCCCATAGCGGT RPE_2499 2754733 - 2754170 - | hypothetical protein TERM 2530 2754868 - 2754844 - R 100 -17.9 -4.87893 | AAGCGCAAGCAAAAA GCGCCACGGTA GCC CACCGTGGCGC CACGTAACCCACCGT RPE_2500 2758286 - 2755266 - | DEAD/DEAH box helicase domain-containing protein TERM 2531 2757163 - 2757147 - G 71 -2.9 -4.62069 | CTCGTAGGTGAAAAA GCCGA GGTCGTA CCGGC CGCTCAGCACGGGAC TERM 2532 2758462 - 2758487 + r 75 -11.7 -3.67112 | TAGCTTACTTGTAGC GCAGGCCCGCC AAAC GGCGGGCCCAC TTCTTCAGATCTACT RPE_2501 2762493 - 2758726 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2533 2759547 - 2759561 + g 79 -2.1 -5.03314 | gap 1, overlap 2759550 TCTGGGTATAGCCCT TG-CGG CGAT CCGGCA TTTTTTCGCGCTCGC TERM 2534 2761443 - 2761459 + g 71 -9.3 -3.79906 | GGGCGAGCTTGATCT CGCGGCG CAG CGCCGGG TTCTTCTCCGGATCG RPE_2502 2763164 - 2764063 + | hypothetical protein RPE_2503 2764325 - 2764849 + | hypothetical protein RPE_2504 2765518 - 2764907 - | hypothetical protein TERM 2535 2765747 - 2765692 - R 71 -5.5 -4.30995 | gap 1, overlap 2765737 GCGGCCAGAAAACAA GCGCCGCCCCGATGACTAGGCAAA TGATACCGT TTTGCTCAATGATC-GGGTGGCGC GACGCCGGCGGGGCT TERM 2536 2765838 - 2765817 - R 100 -18.7 -5.33405 | opp_overlap 2765817 GCGAGCAAAGAAAAA GGCGCCCCG TTGC CGGGGCGCC TTGATCCGTCGTCAG TERM 2537 2765817 - 2765838 + r 93 -18.7 -3.19463 | opp_overlap 2765817 GCGAGCAAAGAAAAA GGCGCCCCG TTGC CGGGGCGCC TTGATCCGTCGTCAG RPE_2505 2767294 - 2765885 - | glutamine synthetase, type I RPE_2506 2767715 - 2767377 - | nitrogen regulatory protein P-II TERM 2538 2768188 - 2768200 + G 75 -6.9 -4.30416 | TGTTGACCATCGCCA CCGGG TCG TCCGG TTTTGCGTTGATGCT TERM 2539 2768462 - 2768498 + G 72 -14.3 -3.05596 | GCAGGCGATCCGCCA GCCCGCTCTGATCATCG ACG CGCTGTTCGGCGCGGGC TTGAATCGCCCGGTC RPE_2507 2768133 - 2769632 + | carbohydrate kinase, YjeF related protein RPE_2508 2770950 - 2769640 - | multicopper oxidase TERM 2540 2770253 - 2770225 - G 76 -6 -4.56597 | gap 2, overlap 2770205 2770204 GCCGCGCGCCAAAAA TGG-C-TCGGCGGG CTG CCCGTCGATGGCCA TCACCCGCAGCTCGT TERM 2541 2770911 - 2770888 - G 100 -10.2 -4.83615 | CAGTGCCGACAAAAA CCCGGCGGAG CCTG CTCCGGCGAG CAGGGCGCGGCGCGT TERM 2542 2771368 - 2771356 - g 73 -9.1 -3.91911 | TGCAGGTCAAGGAAA CCGTC ACC GACGG GTTGAAGCGCGAATT tig 2771340 - 2772701 + | trigger factor TERM 2543 2772721 - 2772747 + F 100 -23 -4.86731 | TTTCAAATCTCGTTG CGCCGGTCCGCG GTT CGCGGGCCGGCG TTTTCTTTGCCGGGC RPE_2510 2773059 - 2773694 + | endopeptidase Clp TERM 2544 2773675 - 2773712 + F 86 -17.7 -2.72379 | gap 1, opp_overlap 2773659 2773658 2773671, overlap 2773677 GGCCGGAGGAAGCCT CGCCGG-CGAAGCCGGTG TAA CGCCGGCTGCGGCCGGTG TGATTACGAGGTTGC TERM 2545 2773677 - 2773710 + F 83 -16.7 -2.90571 | gap 1, opp_overlap 2773659 2773658 2773671, overlap 2773675 CCGGAGGAAGCCTCG CCGG-CGAAGCCGGTG TAA CGCCGGCTGCGGCCGG TGTGATTACGAGGTT TERM 2546 2773763 - 2773785 + F 88 -14.2 -3.74519 | opp_overlap 2773762 2773751 ACAGGGTGATACGAG GCGGGACATC GCG GATGTTCCGC TTTCGTGCCGCTCTT TERM 2547 2775089 - 2775065 - g 73 -3.6 -4.62783 | gap 1, opp_overlap 2775066 2775067, overlap 2775066 2775067 CACCGACCCGAAAAA CGCGCTGGT CAAGCAAT ACCAGCG-G TTGTTCGAGATGGAG clpX 2774082 - 2775356 + | ATP-dependent protease ATP-binding subunit TERM 2548 2775374 - 2775410 + F 81 -12.3 -3.85698 | gap 1, overlap 2775375 GCGTTCGGCCGATCG ATGCTGTCGGGCGCCC CTCGGT GGGCGCCCGAT-GCAC TTTGTGGGCAGCCCC TERM 2549 2775375 - 2775409 + F 79 -15.8 -2.91276 | gap 1, overlap 2775374 CGTTCGGCCGATCGA TGCTGTCGGGCGCCC CTCGGT GGGCGCCCGAT-GCA CTTTGTGGGCAGCCC TERM 2550 2775486 - 2775472 - f 71 -9.2 -3.76952 | opp_overlap 2775476 GGTAGGCAACCCAAA CGCGCA TCA CGCGCG CCATCGCATCGGCGC RPE_2512 2775820 - 2778243 + | ATP-dependent protease La TERM 2551 2778291 - 2778270 - f 87 -18.7 -2.67515 | opp_overlap 2778270, overlap 2778267 CTCACCACGACATCA GCGGCGCCC CTCG GGGCGCCGC TTTTTTTTGGGGTAT TERM 2552 2778270 - 2778291 + F 100 -18.7 -5.79526 | opp_overlap 2778267 2778270 CTCACCACGACATCA GCGGCGCCC CTCG GGGCGCCGC TTTTTTTTGGGGTAT TERM 2553 2778648 - 2778662 + G 85 -5.6 -5.00616 | overlap 2778640 2778634 CCGAATGCGATCTGG CGATCG TGT CGTTCG TTTTTTGGCGCAACC TERM 2554 2778775 - 2778785 + G 79 -2.4 -5.05782 | ACGCCGCTGCTATAC GGGC CCG GCAC TTTTTTACGATCGCT RPE_2513 2778470 - 2779234 + | hypothetical protein RPE_2514 2782620 - 2779477 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 2555 2781291 - 2781258 - G 70 -11.1 -3.51934 | gap 1, overlap 2781256 CGGCCGGCAGAAACA CCG-CCATCAGCACCA AAG TGATGCCGATGATCGG CCCGAACAATTCCGA RPE_2515 2783905 - 2782664 - | RND family efflux transporter MFP subunit RPE_2516 2785385 - 2784114 - | peptidase T TERM 2556 2784571 - 2784561 - G 70 -8.2 -3.92373 | opp_overlap 2784560 2784555 GACCGGATGCAGAAA GCCG TCG CGGC CTTCGGTGGTCTCCG RPE_2517 2785786 - 2785475 - | histone family protein DNA-binding protein TERM 2557 2787030 - 2787048 + G 79 -3 -5.055 | opp_overlap 2787005, overlap 2787033 TTGCGCGAAGGCGCT GTCGATCG ATC CGAACTAC TTTTTTGCGCATTCC RPE_2518 2786374 - 2788404 + | TPR repeat-containing protein RPE_2519 2788719 - 2789084 + | NADH dehydrogenase subunit A TERM 2558 2789171 - 2789191 + G 100 -12.5 -4.72986 | CCACGCACCGGGCGA CCGGTCGGC GCC GACGACCGG TTTTTCGTCGAGGTC RPE_2520 2789075 - 2789677 + | NADH dehydrogenase subunit B RPE_2521 2789688 - 2790293 + | NADH dehydrogenase subunit C RPE_2522 2790395 - 2790730 + | hypothetical protein TERM 2559 2791783 - 2791803 + G 88 -8.3 -4.95155 | ATGTCGCGGTCGAAG CGCCGAA GGGCGAG TTCGGCG TTTTTCTGGTCTCCG RPE_2523 2790780 - 2791970 + | NADH dehydrogenase subunit D RPE_2524 2791967 - 2792932 + | FkbM family methyltransferase RPE_2525 2792947 - 2793696 + | NADH dehydrogenase subunit E RPE_2526 2793693 - 2793911 + | hypothetical protein TERM 2560 2794081 - 2794106 + G 72 -11.7 -3.53224 | opp_overlap 2794073 2794074 AGATGAAGGCCTCCG GCCTGCGCGGC CGCG GCGGCGCTGGC TTTCCCACCGGCATG RPE_2527 2793930 - 2795255 + | NADH dehydrogenase I subunit F RPE_2528 2795260 - 2795469 + | hypothetical protein TERM 2561 2797423 - 2797400 - g 76 -16 -2.80816 | CGCGCATCGACCAGA TCGCACCGGC CGAT GCCGGCGCGA TCGCGGCGCTCGCGG RPE_2529 2795506 - 2797581 + | NADH dehydrogenase subunit G RPE_2530 2797592 - 2798617 + | NADH dehydrogenase subunit H RPE_2531 2798625 - 2799113 + | NADH dehydrogenase subunit I RPE_2532 2799123 - 2799761 + | NADH dehydrogenase subunit J RPE_2533 2799758 - 2800066 + | NADH-ubiquinone oxidoreductase, chain 4L TERM 2562 2801008 - 2801049 + G 83 -9.5 -4.30576 | gap 1, overlap 2801009 AAGGCCCGACCCCGG TGTCGGCGCTGATCCATG CCGCGAC CATGG-TCACCGCCGGCG TTTTCATGGTGGCGC TERM 2563 2801408 - 2801446 + G 74 -10.3 -3.85698 | gap 1, overlap 2801405 2801404 2801411 GGTGATGGTGATCGG TACGCTGGCGCTGACCGG TTTT CCGCTCACCGCCGGC-TA TTTCTCCAAGGACGC TERM 2564 2801411 - 2801444 + G 81 -14.5 -3.51934 | overlap 2801405 2801404 2801408 GATGGTGATCGGTAC GCTGGCGCTGACCGG TTTT CCGCTCACCGCCGGC TATTTCTCCAAGGAC RPE_2534 2800074 - 2802176 + | NADH dehydrogenase subunit L RPE_2535 2802176 - 2803693 + | NADH dehydrogenase subunit M RPE_2536 2803719 - 2805155 + | NADH dehydrogenase subunit N TERM 2565 2805336 - 2805300 - g 77 -15.7 -3.03124 | overlap 2805302 CGTCACCCTGGAACA GACCGCGGGCCGCGGCC GGC GGCAGCGGCCCTGGATC GCGCCGCGCGGCAAT TERM 2566 2805333 - 2805302 - g 70 -13.6 -3.07344 | gap 1, overlap 2805300 TCACCCTGGAACAGA CCGCGGGCCGCGGCC GGC GGCAGCGGCCCT-GG ATCGCGCCGCGCGGC TERM 2567 2805566 - 2805543 - g 70 -3.8 -4.4715 | gap 1 CGCCAATGGACAAAA GCTCGCCGGCA TTT TGCTGG-AAGC CGAGAGCACGGCTGA RPE_2537 2805157 - 2805969 + | biotin--acetyl-CoA-carboxylase ligase RPE_2538 2805969 - 2807639 + | beta-lactamase domain-containing protein RPE_2539 2807663 - 2808067 + | glyoxalase/bleomycin resistance protein/dioxygenase RPE_2540 2808071 - 2808361 + | hypothetical protein RPE_2541 2808654 - 2808313 - | hypothetical protein TERM 2568 2808476 - 2808451 - G 100 -9 -5.72616 | overlap 2808453 ATCGACACAAAAAAA TAGAGCAGGG TGTAAG CCCTGCTCGA AAAATTTCTCGGCCC TERM 2569 2808474 - 2808453 - G 100 -11.6 -4.50122 | overlap 2808451 CGACACAAAAAAATA GAGCAGGG TGTAAG CCCTGCTC GAAAAATTTCTCGGC RPE_2542 2808777 - 2809148 + | hypothetical protein RPE_2543 2809319 - 2809846 + | hypothetical protein TERM 2570 2809900 - 2809942 + F 100 -15.4 -4.19953 | overlap 2809905 CGATCCGACGATCGA CGACGGGGCGGGGGCGCGTC AGC GATGCGCCGCCGCCCTTGTG TTTTGCCGTTCAATC TERM 2571 2809905 - 2809937 + F 100 -22.7 -3.97108 | overlap 2809900 CGACGATCGACGACG GGGCGGGGGCGCGTC AGC GATGCGCCGCCGCCC TTGTGTTTTGCCGTT TERM 2572 2811199 - 2811154 - g 71 -13.9 -2.82516 | opp_overlap 2811185 TCCTGTACGACGACA CCGATCAGCGCGCCGGCGCCA AGTT TGCCACCGCCGATCTGATCGG CATTCCGTGGCAGAT RPE_2544 2810007 - 2811326 + | prolyl-tRNA synthetase RPE_2545 2811403 - 2812683 + | LolC/E family lipoprotein releasing system, transmembrane protein RPE_2546 2812680 - 2813390 + | ABC transporter related RPE_2547 2813646 - 2813395 - | hypothetical protein RPE_2548 2813915 - 2813676 - | hypothetical protein RPE_2549 2814274 - 2814005 - | hypothetical protein TERM 2573 2814686 - 2814709 + H 81 -16 -2.70932 | opp_overlap 2814672 2814673 AGCGGGACAGGGGCG GTCCGCGGCG GCTT CGCCGTGGAC TCGTTCGGCGGACCG TERM 2574 2818147 - 2818100 - g 72 -11.8 -3.61889 | gap 1, overlap 2818101 GAAAAACGTCTTAAA TCGCCGGACGCGGCGGCGATACC GGC GGCTCCGGCGGC-CGGCCGGCGA TCAGGCGGGGCAGGG dnaE 2814806 - 2818303 + | DNA polymerase III subunit alpha TERM 2575 2818501 - 2818487 - g 74 -5.6 -4.56597 | GGTCCGGCTGAAAAA GCAGCG CGA CGTTGC CTTGGCGTTTGGCAA RPE_2551 2818368 - 2818571 + | hypothetical protein RPE_2552 2818571 - 2818969 + | PilT domain-containing protein rpsB 2819332 - 2820324 + | 30S ribosomal protein S2 TERM 2576 2820333 - 2820361 + F 100 -21.1 -3.74519 | opp_overlap 2820325 2820326 TGAGTAACGCGCGTG CATTGCGGCCGGG ACA TCCGGCCGCAATG TTTCGTCGGCATATT tsf 2820457 - 2821380 + | elongation factor Ts TERM 2577 2821388 - 2821423 + F 89 -17.6 -3.14132 | gap 1, opp_overlap 2821381, overlap 2821392 AGAAGTAATCGCCGT CGCAGC-CTCCCGGCCT CTC GGGCCGGGAGCGCTTCG TTGGTAACGGAGGCG TERM 2578 2821392 - 2821419 + F 85 -15.6 -3.39895 | gap 1, opp_overlap 2821381, overlap 2821388 GTAATCGCCGTCGCA GC-CTCCCGGCCT CTC GGGCCGGGAGCGC TTCGTTGGTAACGGA RPE_2555 2821447 - 2822163 + | uridylate kinase RPE_2556 2822231 - 2822794 + | ribosome recycling factor TERM 2579 2823407 - 2823381 - g 73 -9.5 -3.90112 | gap 2 GCTCCCGCAAGGAAA TCGCCAATGCCGC GCA GCGGC-T-GGCGA TCGAGGTGGCCGAAG RPE_2557 2822930 - 2823688 + | undecaprenyl diphosphate synthase TERM 2580 2824236 - 2824258 + G 71 -9 -3.76952 | overlap 2824228 2824251 AACCTGGGCCGGCGC GGCGGGCGGT TTT GTCGCCAGCC TTTGCGTTGCATCAG RPE_2558 2823694 - 2824536 + | phosphatidate cytidylyltransferase RPE_2559 2824541 - 2825764 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2581 2825943 - 2825958 + G 74 -7.6 -4.19704 | GGCGCGCTGGGCCGG GGTCAA GGTT TTGACC TTTTCGCTCGGCTTC TERM 2582 2826792 - 2826811 + G 84 -5.6 -4.84914 | overlap 2826794 CCTGTTCCCGGTGCC GTTGCTCG ATGG CGGGCATC TTTTGTTCTATGCCT RPE_2560 2825806 - 2826957 + | peptidase M50, putative membrane-associated zinc metallopeptidase TERM 2583 2828103 - 2828117 + G 75 -7 -4.4078 | opp_overlap 2828093, overlap 2828099 GAAATGACCATCGAG GCCTCG CGC CGCGGC TTTTCCTTCGCCACC RPE_2561 2827131 - 2829674 + | surface antigen (D15) TERM 2584 2829978 - 2829990 + G 88 -10.5 -4.41548 | opp_overlap 2829978 TTCTGCGCGCCAAGA GCCCG ATC CGGGC TTTTGTCACCTATGC TERM 2585 2830642 - 2830666 + G 81 -11.4 -3.90744 | gap 1, opp_overlap 2830638 2830636, overlap 2830654 GGTCAAGGACAGTGT GCCGCCC-GGC GCGC GCTGGGGCGGC TTCTTTGCGAAGCCG lpxD 2829707 - 2830789 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 2586 2830966 - 2830984 + G 72 -13.1 -3.17051 | overlap 2830963 GGGCATTTTCCCGAT CGCCCGG TGTTT CCGGGCG TCTTGATGATCGAAG RPE_2563 2830789 - 2831244 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ RPE_2564 2831255 - 2832088 + | UDP-N-acetylglucosamine acyltransferase TERM 2587 2832478 - 2832526 + G 82 -16.8 -2.82516 | opp_overlap 2832513 GGATCGGGCAGATCT TCGAGCGCGACGGCTTTCGG TTGCTCGGT CTGAAAGACGTCGCGCCCGA TCTGCTGATGCCCGA RPE_2565 2832111 - 2832965 + | hypothetical protein TERM 2588 2834001 - 2833955 - g 73 -14.3 -3.19389 | gap 1, overlap 2833947 GAATTCATCCAGGAA GCCTGCACCGCGC-CGACGCTG GCGG CGGCGTTGCGCGAGGTGCTGGC CGATACGCCGGCGCG RPE_2566 2832962 - 2834137 + | lipid-A-disaccharide synthase TERM 2589 2834146 - 2834166 + T 83 -15.4 -3.14881 | opp_overlap 2834146, overlap 2834165 TCCCTGAAACGAAAA CGGCCCGC GCGAG GCGGGCCG TTGGTCGCAACGTTG TERM 2590 2834166 - 2834146 - T 100 -15.4 -4.54727 | opp_overlap 2834146 2834165 TCCCTGAAACGAAAA CGGCCCGC GCGAG GCGGGCCG TTGGTCGCAACGTTG gltA 2835494 - 2834190 - | type II citrate synthase gltX 2837076 - 2835652 - | glutamyl-tRNA synthetase TERM 2591 2835861 - 2835918 + g 72 -6.8 -4.19817 | gap 1, opp_overlap 2835887 2835888 AGGTGACCGCCTCGA GCGCCGCGCGCAGCCGGCCGATCAAAT GCCGG GTTTCGGCGGTCAGCAGCGC-CTGCGC TTTTGGGTCGATCGG RPE_2569 2837229 - 2838911 + | glutaminyl-tRNA synthetase TERM 2592 2839976 - 2840015 + G 74 -15 -2.97188 | gap 1, opp_overlap 2839976 2839980, overlap 2839979 GACCTTTCCGATCAA GAAAGTCGCGGCGG-CAGC GGC GCTGGCCGCGGCGGCGTTC TATCTGGTGCTGTCG TERM 2593 2839979 - 2840012 + G 73 -10.9 -3.62616 | gap 1, opp_overlap 2839976 2839980, overlap 2839976 CTTTCCGATCAAGAA AGTCGCGGCGG-CAGC GGC GCTGGCCGCGGCGGCG TTCTATCTGGTGCTG TERM 2594 2840011 - 2839980 - g 91 -12.2 -4.24342 | gap 1, opp_overlap 2839979 2839976, overlap 2839976 TTTCCGATCAAGAAA GTCGCGGCGG-CAGC GGC GCTGGCCGCGGCGGC GTTCTATCTGGTGCT TERM 2595 2840824 - 2840864 + G 72 -11.9 -3.51934 | gap 3, opp_overlap 2840823 2840824, overlap 2840822 2840847 2840862 TTCTGGTGAAGGAAT GGC-TCGCCG-CCGACGCCG ATGG CCGCG-CGGTCGGCGATGCC TCTTTGTCGAACGGC RPE_2570 2838987 - 2841284 + | ComEC/Rec2-related protein RPE_2571 2842055 - 2841342 - | LexA repressor TERM 2596 2841974 - 2842010 + g 75 -13 -3.39895 | gap 1, opp_overlap 2841984 GCGCGTCCTTCATCT CGTC-GAAGGAGGGCGG CACG CCGGCCTCCTTCAGCCG TTCGTTGATGAACCG TERM 2597 2842118 - 2842099 - R 95 -11.4 -4.65895 | gap 1, opp_overlap 2842089 2842085 TCTGCGACTCAAAAA CCGCGGCGC GGG GCG-CGCGG GCGGCTTCGAGTCTC TERM 2598 2842192 - 2842163 - R 77 -3.7 -4.91473 | gap 1, opp_overlap 2842170, overlap 2842164 2842170 CAACTGAAAAACAAA TCATGAACGAACAC TAT ATGTTCGTT-ATGT GTTCCGCAACCCGTT RPE_2572 2843447 - 2842236 - | molybdenum cofactor synthesis domain-containing protein TERM 2599 2843506 - 2843455 - H 79 -9.2 -4.1721 | gap 1, opp_overlap 2843447 2843476 2843504 AGGGACATCGGAAAA CTCCGGTGGTGTGGCTCCGATCGGC CGC GGCG-TCGGTTCCGAACCACCGGCG GCACGCTCAAGCTGC RPE_2573 2843669 - 2843929 + | hypothetical protein RPE_2574 2844042 - 2844347 + | hypothetical protein TERM 2600 2844637 - 2844688 + G 73 -12.9 -3.31263 | overlap 2844638 CCGAGGTGGTGCTGG CCGGC-CGCAACGCCGCCAAGGGCG CGGG CGCCC-TGGCGCGGCTGCGCGCCGC TTATCCCGATGCAAT TERM 2601 2844638 - 2844687 + G 77 -16.4 -2.58544 | overlap 2844637 CGAGGTGGTGCTGGC CGGC-CGCAACGCCGCCAAGGGCG CGGG CGCCC-TGGCGCGGCTGCGCGCCG CTTATCCCGATGCAA TERM 2602 2845088 - 2845046 - g 78 -14.9 -3.21747 | gap 1, opp_overlap 2845036 CTACGGCATGACCAA GCTGGCGATGCTGCTGTTCG CCTT CGAACTGCAGCGCCGC-AGC GAGGCCGCGGGCTGG RPE_2575 2844510 - 2845436 + | short-chain dehydrogenase/reductase SDR RPE_2576 2845936 - 2847210 + | hypothetical protein RPE_2577 2847808 - 2848188 + | hypothetical protein TERM 2603 2848256 - 2848312 + T 73 -8.3 -4.09685 | opp_overlap 2848304 2848307 ACGTAGCGGAGGATT CGATCGCCGCAACCTGGCTCGACGCCG GAT CGGCGACGAGCCGGAGAACGACGAAGG TTTTCGCGCATAGGG RPE_2578 2848764 - 2848483 - | hypothetical protein RPE_2579 2849686 - 2849360 - | hypothetical protein RPE_2580 2850074 - 2850592 + | hypothetical protein RPE_2581 2850817 - 2851224 + | hypothetical protein RPE_2582 2852014 - 2851247 - | HAD family hydrolase TERM 2604 2852058 - 2852081 + H 73 -6.6 -4.25283 | gap 1, overlap 2852058 CCTACGCCGGATGGG C-CCGGCGACG CGC CGGCGTCGGAG TTTTGATGAGGCCAT TERM 2605 2852597 - 2852539 - g 70 -13.2 -3.04144 | gap 3 GCGGCATGGCCAAGA CCGGCGC-GC-AGATCCAGGCCGAACGCG AATT CGCGCT-GGCCTCGGCCTCGCTGCGCCAG GCGCTGCAGGACATG TERM 2606 2853043 - 2853026 - g 72 -8.3 -4.08767 | GCTATTGCGCGAAAA CCCGCCG CTGC CGCCGGG GCTGACGCCATAAGG RPE_2583 2852214 - 2853056 + | OmpA/MotB RPE_2584 2853240 - 2853518 + | type IV pilus assembly PilZ RPE_2585 2856194 - 2853543 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2607 2854718 - 2854698 - G 87 -14.7 -3.85698 | opp_overlap 2854708 GTCGCTTCCGACAAA CTCGGCGCG CGC CACGCCGAG CACGCGCAGGCCGGC TERM 2608 2855452 - 2855470 + g 71 -3 -4.64766 | GCCTCGGTCTTCAAT TCGCCGAG CGA CTGGCCGA TTTTTCCGATCTCGC TERM 2609 2857051 - 2857033 - R 79 -9.5 -4.15788 | overlap 2857020 AAGGCTGTGAAGAAA GCCCGGC AAACA GCCGAGC GTCCAAGTCTTGTTA RPE_2586 2857859 - 2857356 - | heat shock protein Hsp20 TERM 2610 2857794 - 2857782 - G 82 -4.7 -4.87665 | GTGCAGCGACAAAAA CGGGC TCT GCTCG ATCTCGAAGCGCGTG TERM 2611 2857903 - 2857942 + H 71 -11.4 -3.53012 | gap 1, overlap 2857906 GCTGTAACGCTGTTG TC-ACGTTAGCTCCCCGCG CCA TGCGGGGCGCGAGCGTCGA TTTGGGAAGCGGCGC RPE_2587 2858082 - 2858486 + | hypothetical protein RPE_2588 2859756 - 2858686 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase moaC 2860355 - 2859798 - | molybdenum cofactor biosynthesis protein C TERM 2612 2860151 - 2860182 + g 73 -4.2 -4.62069 | overlap 2860152 TGGCCGCCATGATGC CGGCGATCCGCGCG GTGC CGAGCACATCGCCC TTTTTGGCGTCGCCG TERM 2613 2860240 - 2860271 + g 85 -14.4 -4.0371 | gap 1, opp_overlap 2860210 CGCATCAGCACGCGA CCCTCGGCC-ACCGC GAC GCGGTCGGTCGCGGG TTTGTGTGAGACGTC RPE_2590 2861179 - 2860358 - | indole-3-glycerol-phosphate synthase trpD 2862206 - 2861187 - | anthranilate phosphoribosyltransferase TERM 2614 2862159 - 2862177 + g 75 -11.7 -3.62572 | opp_overlap 2862159 TTCGTCGCGAGTCAA GGTCGCC CCGGT GGCGACC TTTCCGATAATACTC RPE_2592 2864148 - 2862247 - | PpiC-type peptidyl-prolyl cis-trans isomerase RPE_2593 2864436 - 2865197 + | Triose-phosphate isomerase TERM 2615 2865446 - 2865426 - g 77 -11.1 -3.85698 | GTGCTGCTGCAGAAA TCCGAGGGC GGT GCCCTGGGA GTCGGCGGTGGAGGC TERM 2616 2865511 - 2865538 + G 89 -11.2 -4.24342 | gap 1 CTGCGAATCTGCTGA CCCGCAGCACGGG ATT CCTG-GCCGCGGG TTTCTTCGTGACCAG secG 2865354 - 2865746 + | preprotein translocase subunit SecG TERM 2617 2865770 - 2865805 + F 93 -16.3 -3.76641 | opp_overlap 2865751 2865748 GCTCATGTCGCGCGC GACTTGCCGGAAGTT GTCAAA AACGTCCGGCAAGTC TTTCGCTATTAGGCT RPE_2595 2865913 - 2867544 + | CTP synthetase TERM 2618 2869606 - 2869582 - g 78 -6.5 -4.67607 | gap 1 TCGCGAACAAAGAAA GCGATCTTCG TTTTGC CGA-GATCGC CGCGTCGTTCAATTT RPE_2596 2867697 - 2870096 + | hypothetical protein RPE_2597 2870461 - 2870144 - | PAAR repeat-containing protein TERM 2619 2870376 - 2870397 + g 77 -12.9 -3.59979 | GTCACATCGGCGCTG CCACCGGCG ATGG CGCCGGAGG TTTGGCATGCGACCG RPE_2598 2870766 - 2870491 - | hypothetical protein RPE_2599 2870929 - 2870756 - | hypothetical protein RPE_2600 2871181 - 2872056 + | hypothetical protein TERM 2620 2872062 - 2872090 + G 70 -6.5 -4.2074 | overlap 2872063 CGAGGGTTGATTGCC AGGCAGCCGACCG GCA TGGTCGGCACCCG TTTGTATCTTCAGCA RPE_2601 2872057 - 2872974 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 2621 2875431 - 2875374 - g 79 -16.3 -3.05562 | opp_overlap 2875374 2875407 2875410, overlap 2875365 2875405 2875407 ACAAATGGGGCAATA TCGCCGCCGACGACGACACCCAG TCCACCAACATG CCGGGCGTGTTCGCCGGCGGCGA TATCGTCACCGGTGG RPE_2602 2873255 - 2876239 + | trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein TERM 2622 2876241 - 2876298 + T 71 -6.2 -4.34285 | opp_overlap 2876240 2876255, overlap 2876289 GGCTGCTGACGTAAG GCGTGCGCT-GAACAGGCCCGCGCGATC ACCC GATCGCGCGG-CTGCTACCAAGGCACGC TTGTTTCTTTCCGTG RPE_2603 2877506 - 2876424 - | putative GAF sensor protein RPE_2604 2877680 - 2877964 + | hypothetical protein RPE_2605 2877989 - 2879587 + | glucose-methanol-choline oxidoreductase RPE_2606 2880117 - 2879626 - | 7-cyano-7-deazaguanine reductase TERM 2623 2880412 - 2880393 - g 79 -16.4 -3.01712 | CGTGGTGCTCGAAGA CGGCGCGG TCGG CCGCGCCG CGGTGCCGTCCGGCG TERM 2624 2881113 - 2881089 - g 90 -15.7 -3.78934 | TGGCGGTGAGAACAA GACCCGCTCGG TCT CCGAGCAGGCC AAATATCTCGCCGAT RPE_2607 2880307 - 2881590 + | phosphopyruvate hydratase TERM 2625 2882030 - 2881979 - g 75 -15.6 -2.70932 | GCCGGTCGGCAACGA GGGCGCGGGCACCGTGGTCAAGGC CGGC GCCTCGCCCGCGGCGCAGGCGCTC GCCGGCAAGACCGTG TERM 2626 2882391 - 2882419 + G 72 -11.8 -3.53811 | opp_overlap 2882386 2882382 CAGGAACTGACGCAG GCGATGGTCG ACAGCGGCG CGACCATCGC TTTCGACGCGATCGG RPE_2608 2881683 - 2882819 + | alcohol dehydrogenase TERM 2627 2882851 - 2882898 + T 95 -10.4 -4.67353 | gap 1, opp_overlap 2882849, overlap 2882839 2882853 2882855 2882857 GCACGGAATTCAATT CTGTCATTCCGGG-GCGCGCGCC CTT GGCGCGCGAACCCGGAATCTCTC TTTTTCACTCGATGG TERM 2628 2882853 - 2882896 + T 100 -17.4 -3.95214 | gap 1, opp_overlap 2882849, overlap 2882851 2882855 2882857 ACGGAATTCAATTCT GTCATTCCGGG-GCGCGCGCC CTT GGCGCGCGAACCCGGAATCTC TCTTTTTCACTCGAT TERM 2629 2882855 - 2882894 + T 100 -18.6 -3.56042 | gap 1, opp_overlap 2882849, overlap 2882853 2882851 2882857 GGAATTCAATTCTGT CATTCCGGG-GCGCGCGCC CTT GGCGCGCGAACCCGGAATC TCTCTTTTTCACTCG TERM 2630 2882857 - 2882892 + T 95 -21.2 -3.34527 | gap 1, opp_overlap 2882849, overlap 2882855 2882853 2882851 AATTCAATTCTGTCA TTCCGGG-GCGCGCGCC CTT GGCGCGCGAACCCGGAA TCTCTCTTTTTCACT RPE_2609 2883627 - 2883016 - | lysine exporter protein LysE/YggA TERM 2631 2883494 - 2883528 + g 70 -11.3 -3.53091 | overlap 2883495 ATATGCGGCACGATG CCCAGCGTGCAGGCG AAGGC CGCCACCACGCTGGC TTTCGGGCCGCGCGT TERM 2632 2883495 - 2883527 + g 72 -14.8 -2.71712 | overlap 2883494 TATGCGGCACGATGC CCAGCGTGCAGGCG AAGGC CGCCACCACGCTGG CTTTCGGGCCGCGCG RPE_2610 2883824 - 2884381 + | NADPH-dependent FMN reductase RPE_2611 2884447 - 2884764 + | septum formation initiator TERM 2633 2884811 - 2884821 + F 78 -5.4 -4.68424 | opp_overlap 2884797 TCCCGAAAACGATTT CGAA TGT TTCG TTTTTCGCTGCGTTG RPE_2612 2884929 - 2885969 + | pyruvate dehydrogenase (acetyl-transferring) RPE_2613 2885979 - 2886578 + | hypothetical protein RPE_2614 2886599 - 2887993 + | pyruvate dehydrogenase subunit beta RPE_2615 2887997 - 2888293 + | hypothetical protein TERM 2634 2888908 - 2888859 - g 95 -18.6 -3.62096 | gap 3, overlap 2888860 GTCGAGCAGGCGAAA GCCGGCGGCGGGCCGAAGGCGCCGG CTG CCG-CGCCGTCGTCC-GC-GCCGGC GATCGCGCCGTCGCT TERM 2635 2888910 - 2888860 - g 80 -17.5 -2.77043 | overlap 2888859 TCGAGCAGGCGAAAG CCGGCGGCG-GGCCGAAGGCGCCGG CTG CCG-CGCCGTCGTCCGCGCCGGCGA TCGCGCCGTCGCTGT RPE_2616 2888307 - 2889662 + | branched-chain alpha-keto acid dehydrogenase subunit E2 RPE_2617 2889664 - 2890005 + | hypothetical protein RPE_2618 2890025 - 2891446 + | dihydrolipoamide dehydrogenase RPE_2619 2891562 - 2892161 + | hypothetical protein RPE_2620 2892394 - 2892963 + | hypothetical protein TERM 2636 2893648 - 2893613 - g 71 -3 -4.62471 | opp_overlap 2893624, overlap 2893614 2893615 TTCAACGGCGAAAAA TTGCCGCGCCAAGCCG CCCG CGGCCTGATGTGGCTG ACTCTGGCGCGTGAC RPE_2621 2893001 - 2893789 + | Sel1 domain-containing protein RPE_2622 2894610 - 2893819 - | exodeoxyribonuclease III RPE_2623 2894761 - 2895891 + | RND family efflux transporter MFP subunit TERM 2637 2898421 - 2898468 + G 75 -6.8 -4.30576 | gap 1, opp_overlap 2898395, overlap 2898422 2898455 CCATCGCCACCGGCT TCTCCGGCACCGCGCAGGTGTTC CAG GATTCGCTGCGCGG-GCAGGGGG TTTTGATCCTGGCCG TERM 2638 2898813 - 2898836 + G 72 -13.8 -3.05596 | ACGCTGCCGATCGCG CTCGGCGCCG GCGC CGGCGCCGAA TTGCGTCAGCCGCTC RPE_2624 2895894 - 2899022 + | acriflavin resistance protein RPE_2625 2900085 - 2899030 - | hypothetical protein RPE_2626 2901122 - 2900082 - | hypothetical protein TERM 2639 2900145 - 2900133 - G 70 -6.2 -4.21194 | overlap 2900142 GGCCAGCACCGAAAA CGCC ACGAA GGCG AGGATGGCGCCGATC RPE_2627 2901366 - 2901590 + | hypothetical protein TERM 2640 2901770 - 2901803 + T 70 -13.1 -2.86432 | overlap 2901763 2901791 AGGATTTTGGAGAGC TCGCTCGAACGTCAG GGCT CTGTCGTCCGAGCGG TGTCATCCTGTTACG RPE_2629 2902281 - 2901952 - | HesB/YadR/YfhF TERM 2641 2903163 - 2903215 + G 72 -13.2 -3.14132 | opp_overlap 2903142 TCTCGACGAGTCGCG ACGTGGCGCCGAACTGGTGCGCGA ACTCA TCTCCCGCCTGATCGGCGCCGCGG TTGGTGAGGCGGAAC RPE_2630 2902399 - 2903601 + | deoxyguanosinetriphosphate triphosphohydrolase RPE_2631 2903732 - 2904127 + | hypothetical protein TERM 2642 2904242 - 2904232 - f 71 -5.4 -4.41616 | ATTCGTTCAAAGAAA TCGT CGA ACGA CCCGCTTAGTAAGAG RPE_2632 2904706 - 2906199 + | porin TERM 2643 2906236 - 2906269 + T 100 -23.3 -3.72241 | opp_overlap 2906241, overlap 2906241 CTCAGATCTGTTCTC GGAAATCCCCGGCGG GCAA CCGCCGGGGATTTTC TTTGCGTCGTTGATC TERM 2644 2906241 - 2906264 + T 100 -19.6 -4.9138 | opp_overlap 2906241, overlap 2906236 ATCTGTTCTCGGAAA TCCCCGGCGG GCAA CCGCCGGGGA TTTTCTTTGCGTCGT TERM 2645 2906264 - 2906241 - T 100 -19.6 -3.53091 | opp_overlap 2906241 2906236 ATCTGTTCTCGGAAA TCCCCGGCGG GCAA CCGCCGGGGA TTTTCTTTGCGTCGT RPE_2633 2908800 - 2906482 - | lytic transglycosylase, catalytic TERM 2646 2906754 - 2906782 + g 89 -18.1 -3.29144 | AATCTTCCAGCAGGC CGCCGAGTTCGGC GGC GCCGAGCGCGGCG TTATAGACCGAGTCG TERM 2647 2908073 - 2908084 + g 79 -7.2 -4.67038 | overlap 2908059 ACGAGCTTGCCCTTT GCCG AGAT CGGC TTTTCGTTTTGGAAA TERM 2648 2908410 - 2908428 + g 77 -13.1 -3.53012 | overlap 2908400 2908389 CGACGGCCGCGGACA CCGGCGG CTTTC CCGCCGG TTTGGCGGCGGGCAG TERM 2649 2908904 - 2908880 - R 100 -21.5 -3.32993 | opp_overlap 2908874 CCACCGATATACGAA GAGCGACGCCC AAG GGGCGTCGCTC CAAGCATTAATCGTG RPE_2634 2909602 - 2908928 - | hypothetical protein TERM 2650 2910078 - 2910058 - g 72 -14.7 -2.78384 | GCTGGCTGCACCACA CGGTCGACG TGC CGCCGACCG AGGAAGTCTACACCC RPE_2635 2909820 - 2910230 + | NADH dehydrogenase RPE_2636 2910675 - 2911430 + | secretin/TonB, short-like protein RPE_2637 2911472 - 2911981 + | ECF subfamily RNA polymerase sigma-24 factor TERM 2651 2912989 - 2913002 + G 77 -3.8 -4.72986 | CGAGGATGCCATCAC CCAG ATCCAG CTGG TTTTTCATGCCAATG RPE_2638 2912084 - 2913058 + | putative FecR TERM 2652 2915157 - 2915121 - g 71 -12.1 -3.30771 | opp_overlap 2915149, overlap 2915122 CTATACGTTCGACAA TGCGCCGGCCGATACGA AGT TCGTCGCGGCCGGCGGC GGCTTCGTGCGCACG TERM 2653 2915156 - 2915122 - g 74 -15.6 -2.58249 | opp_overlap 2915149, overlap 2915121 TATACGTTCGACAAT GCGCCGGCCGATACGA AGT TCGTCGCGGCCGGCGG CGGCTTCGTGCGCAC TERM 2654 2921264 - 2921221 - g 78 -16 -3.13432 | GGCAAGATCATCGAA GCGCCGAACCGCGCCATC GTCGACCT GACGACGCGGTACGGCAC GCTGACGCTCACCAG TERM 2655 2922665 - 2922686 + G 81 -8 -4.65895 | overlap 2922645 CGGAGGCTCTTTGCG CCGTGGTC TGTGGC GACTACGG TTTTTCGGTGAGCGA TERM 2656 2924529 - 2924553 + G 70 -11.4 -3.36273 | opp_overlap 2924509 2924535 CCACAGCTCGGGCAG CAGCAACCCG ATCAA CGGGTCGCTG TTCGTGTTCGGCCCG TERM 2657 2924652 - 2924673 + G 79 -11.6 -3.85698 | CGACATCGTCGGCCT CGTCACCG GCGAGA CGGTGACG TTTCTGAGCGGCACG RPE_2639 2913172 - 2926188 + | filamentous haemagglutinin outer membrane protein TERM 2658 2926308 - 2926285 - f 71 -5.2 -4.41616 | opp_overlap 2926286 2926288, overlap 2926286 AGCGTCCGAAAGAAA TGATGCGCGA GGGC TGGCGCATCT GGTGTGGTCGGGCTG RPE_2640 2926635 - 2927276 + | hypothetical protein TERM 2659 2927313 - 2927332 + G 77 -4.2 -4.77036 | gap 1, overlap 2927265 CCATCGCCCGCTACT CGCC-GCTT ATC ATGCTGGCG TTTTTGATCGTCGCG TERM 2660 2927476 - 2927496 + G 72 -4.6 -4.52589 | overlap 2927477 GGTCGGACTGCTTTA TGCGGCGA AGCCC TGGCCGCG TTTTCTGTCGCAAAG RPE_2641 2927279 - 2928499 + | ATPase RPE_2642 2928496 - 2930754 + | hypothetical protein TERM 2661 2931598 - 2931586 - g 79 -3.4 -5.00616 | CGCGTCCGCAAAAAA TCGA TCGGC TCGA CAATGATTGGAATAA RPE_2643 2930811 - 2931758 + | hypothetical protein RPE_2644 2931793 - 2931993 + | hypothetical protein RPE_2645 2932150 - 2932788 + | secretin/TonB short N-terminal domain-containing protein RPE_2646 2932785 - 2933393 + | ECF subfamily RNA polymerase sigma-24 factor RPE_2647 2933390 - 2934367 + | putative FecR TERM 2662 2934436 - 2934426 - f 78 -5.4 -4.73388 | opp_overlap 2934426 AACTGTCATCAAAAA TCTG GTT CAGA TTCTGTTTTCGGCCG TERM 2663 2935390 - 2935417 + G 74 -14.8 -2.96692 | opp_overlap 2935383 2935381 GATCAATACGGCCGC GCCGTCGTCGGT GACC GCCGGCGGCGGC TATGTGCTGCTGCTC TERM 2664 2943011 - 2943025 + G 85 -5.6 -5.06414 | opp_overlap 2943004 TTGAATTACGATCTA CCGATC GAG GACCGG TTTTTCTTAGCAGGC TERM 2665 2944891 - 2944912 + G 75 -11.6 -3.73068 | GGCAGGTGGCGATCT GGTGCCGA TCAGCC TCGGCACC TTCTTGCCTTCCACC RPE_2648 2934536 - 2947021 + | filamentous haemagglutinin outer membrane protein TERM 2666 2947253 - 2947279 + F 88 -4.4 -5.28176 | gap 1, opp_overlap 2947244 2947243 2947253 ACTAATCGCAACAAT CGGGTGTTGCG TCTCCC CGCAAC-CACG TTTTTTATAACTCAC TERM 2667 2947295 - 2947326 + F 76 -7.9 -4.32067 | opp_overlap 2947294, overlap 2947297 TTTTTTATAACTCAC TCGCCGTTCCGGT CTAACC ACCGGGACGGCTC TTATTTTCTGGAATG TERM 2668 2947297 - 2947324 + F 88 -14.9 -3.75581 | opp_overlap 2947294, overlap 2947295 TTTTATAACTCACTC GCCGTTCCGGT CTAACC ACCGGGACGGC TCTTATTTTCTGGAA RPE_2649 2947611 - 2948324 + | TonB family protein RPE_2650 2948321 - 2948926 + | ECF subfamily RNA polymerase sigma-24 factor RPE_2651 2948923 - 2949897 + | putative FecR TERM 2669 2950308 - 2950286 - g 70 -11.2 -3.56594 | CGAAATCCCGGGAAA CGCTGACGCG CGC CACGGCAGCG CTGCAGGCGATGCAG TERM 2670 2952324 - 2952343 + G 77 -5.6 -4.62069 | opp_overlap 2952305, overlap 2952317 2952315 CGACCAGCTGCCGAG CGGGGCTG CGCT CAGCATCG TTTTTGCGATGCGCG TERM 2671 2960180 - 2960212 + G 70 -10.4 -3.64703 | TGGGCGGCTTCGTCA CCGCGCCGGCGTGG GGCAG CGACGGCGGCTCGG TTTCGATCACGGCCG TERM 2672 2961640 - 2961614 - g 70 -6.6 -4.16842 | gap 2, overlap 2961617 CCCAGGGTGAACAAA CGACCGACGACG GCATA CG-CG-CGGTCG GCGACGGCAGCAACG TERM 2673 2961759 - 2961796 + G 72 -8.3 -4.08216 | opp_overlap 2961738 2961759, overlap 2961760 CGTGGTCAGCCAATA TGTCGATCCCGCCCATG CCGG CAGCGGCGGCATCGACC TTTTGACCCCCATCG TERM 2674 2962482 - 2962464 - g 71 -3 -4.63527 | overlap 2962466 2962470 2962471 CCAGGACCCCAAAAA GAGCAACG TGA CGCTGACC GCGCCGCGCGGCATC TERM 2675 2962909 - 2962897 - g 84 -6.9 -4.77438 | ACCGACGAGGAAAAA GCCCG ATT CAGGC AGATCGAGCAACGCG RPE_2652 2949934 - 2962935 + | filamentous haemagglutinin outer membrane protein RPE_2653 2963467 - 2963192 - | hypothetical protein TERM 2676 2963509 - 2963486 - H 72 -7.4 -4.15565 | gap 1, opp_overlap 2963486 2963484 2963481 TGGACTATCTCAAAA TCGTTGACCCG TGC CGGG-CAGCGA TATTGTCATCTAACC TERM 2677 2963654 - 2963694 + H 74 -12.5 -3.28416 | opp_overlap 2963637 2963636 2963653 2963654 GCATCCGCAAGAAAT GGACGCCGTGCTGGATGCG TGG CGTATCCTGGACGATGTCC TTGGTCTAACTCCTA RPE_2654 2963672 - 2964472 + | secretin/TonB short N-terminal domain-containing protein RPE_2655 2964475 - 2964999 + | ECF subfamily RNA polymerase sigma-24 factor TERM 2678 2965687 - 2965720 + G 74 -14.5 -3.07816 | overlap 2965691 AGCATGGCACGTTCA GTTTGCGCCGCGACG ACGC CGTCGCGTCGCTGAC TTGCCTCGATGGCGA TERM 2679 2965691 - 2965716 + G 77 -16.1 -2.55213 | overlap 2965687 TGGCACGTTCAGTTT GCGCCGCGACG ACGC CGTCGCGTCGC TGACTTGCCTCGATG RPE_2656 2965035 - 2966075 + | putative FecR TERM 2680 2971228 - 2971244 + G 84 -9.3 -4.56597 | TCCCGGCAATCTCAC CCTCCGC GCG GCGGCGG TTTTTCCCGCCAGCA TERM 2681 2973132 - 2973163 + G 73 -14.4 -3.15999 | gap 1 GCAGGTTTGCAGGTG CGCGGTCGCTGCGGC TGC GCAGC-GCGACCGTG TTCAATCTCTACGAC TERM 2682 2973195 - 2973222 + G 79 -13.4 -3.6715 | opp_overlap 2973180, overlap 2973196 TCGGCGGCATCGCGC TCGGCGATGCGG CTCG CCGCATTGCCGC TTTGACGTTCGATGG TERM 2683 2973196 - 2973221 + G 80 -16.9 -2.79968 | opp_overlap 2973180, overlap 2973195 CGGCGGCATCGCGCT CGGCGATGCGG CTCG CCGCATTGCCG CTTTGACGTTCGATG TERM 2684 2973488 - 2973516 + G 72 -13.1 -3.10164 | overlap 2973489 GGTCCGATGGCCGCC GCGGCGCTGACGT TCA ATGTCGGCGGCGC TTCGATCGTCAATGG TERM 2685 2973666 - 2973703 + G 70 -8.4 -3.91897 | gap 2, overlap 2973665 CCGGCCTGACCGACG GCGCG--CCGGTGACGCT GACC AGCGCCACCGGTTCGGGC TTTGTCGGTACGGCG TERM 2686 2973782 - 2973825 + G 75 -15.3 -2.75183 | opp_overlap 2973777, overlap 2973786 ACCGGATATACGTCG GTCACCGCGGTCAAGGTGG GGGGCA CCACCGTGACCGGGGTTAC TGCTTCGCTCGGCGT TERM 2687 2973786 - 2973821 + G 78 -14.7 -3.2827 | opp_overlap 2973777, overlap 2973782 GATATACGTCGGTCA CCGCGGTCAAGGTGG GGGGCA CCACCGTGACCGGGG TTACTGCTTCGCTCG TERM 2688 2974646 - 2974588 - g 72 -14.5 -2.78679 | overlap 2974587 2974633 GCTGGCCATCGAAAC CGCCGACAGCGGCACTGCGCTTCTCCT GGGCG AGCTGAAAGGCAATGCCGCGTTCGGCG ATCTCGGTGGCAGCC TERM 2689 2976191 - 2976172 - g 70 -11.4 -3.45571 | opp_overlap 2976172, overlap 2976166 2976187 GCTGGGAAATACCAA CGCCGTCC AGAC GAACGGCG TCATTAGCGCCGGCT TERM 2690 2978669 - 2978707 + G 70 -11.5 -3.36878 | overlap 2978629 ATCACTCTGCTGTTC GGCGTCGGCGCGGGAGT CGATT ACGCCAGCGCCATCGCC TTCTACGTGAATCCC RPE_2657 2966258 - 2979880 + | filamentous haemagglutinin outer membrane protein RPE_2658 2980487 - 2979900 - | prepilin-type cleavage/methylation-like protein RPE_2659 2980965 - 2980519 - | prepilin-type cleavage/methylation-like protein RPE_2660 2981419 - 2980937 - | putative general secretion pathway protein H precursor TERM 2691 2981047 - 2981024 - GR 71 -9.5 -3.75629 | opp_overlap 2981026 GAGCGCGAACCGAAA GACGGCGCC GCAGTT GGTGCCGTC GGGCCGGAATATCAG RPE_2661 2981864 - 2981394 - | general secretion pathway protein G RPE_2662 2983083 - 2981881 - | type II secretion system protein TERM 2692 2982113 - 2982129 + g 73 -13.7 -3.15544 | opp_overlap 2982112 2982109 2982111 ACCGGTGGAAAGAGT GCGCTGG CCG CCAGCGC TTCATGCAACTGGCC TERM 2693 2982319 - 2982277 - G 78 -10.4 -4.13648 | AAGGTTAGACAGAAA GCGGGTCGTCAACCACAGCG TGG CGATGCCGCGGACGACCGGC AAGCGCAACAGTGTC RPE_2663 2984956 - 2983274 - | type II secretion system protein E RPE_2664 2985411 - 2984968 - | hypothetical protein RPE_2665 2985965 - 2985408 - | hypothetical protein RPE_2666 2986996 - 2985962 - | fimbrial assembly family protein RPE_2667 2987891 - 2987016 - | hypothetical protein RPE_2668 2988568 - 2987888 - | general secretion pathway protein O TERM 2694 2988366 - 2988348 - G 74 -5.3 -4.46212 | gap 1 TCGGGGATGAGAAAA TCCGCGAG ATCG CT-GCGGA TGACCACCATCACAA RPE_2669 2990957 - 2988588 - | general secretion pathway protein D TERM 2695 2989307 - 2989282 - G 70 -2.5 -4.57837 | overlap 2989283 AGACCTGCCGAAAAA TTGCCGCTCTT GAGA AAGAACTGCAC GCCATACTGCAACTC RPE_2670 2991751 - 2991107 - | ECF subfamily RNA polymerase sigma-24 factor RPE_2671 2993845 - 2991833 - | TPR repeat-containing protein RPE_2672 2996126 - 2993847 - | TPR repeat-containing protein TERM 2696 2995693 - 2995722 + g 70 -6.4 -4.18018 | gap 1, overlap 2995687 AGAACCAGGGCGCGG TCGAGTGCCGCGA TCGCT TCGCGGCGG-CGA TTTTCCGTGAGCAGC TERM 2697 2997738 - 2997724 - g 77 -3.4 -4.8622 | overlap 2997725 2997726 CGGCTCAACCAAAAA CGGCCG TAT CGGCTA CGTGAGCTCGGACTT RPE_2673 2996468 - 2998378 + | hypothetical protein TERM 2698 2998404 - 2998429 + F 100 -21.9 -4.07687 | GTTTTGCTGAATGGC CCGGGCGCCTC GCTA GAGGCGCCCGG TTTTCCCCGCCCGAT RPE_2674 2998465 - 2999460 + | NAD-dependent epimerase/dehydratase TERM 2699 2999531 - 2999508 - f 90 -2.3 -5.42259 | opp_overlap 2999509, overlap 2999510 GGATTTCGAAAAAAA GTGTGTGCG GCGCTT CGCAAACGC TGCCGGCAATTGTCT TERM 2700 2999643 - 2999658 + G 75 -9 -4.0641 | opp_overlap 2999642 2999631 2999630 2999643 AACGGTCCGGACAAT GCGAAG CTCG CTTCGC TTTATCTCGATCCCG RPE_2675 2999607 - 2999921 + | hypothetical protein RPE_2676 3000390 - 3000725 + | hypothetical protein RPE_2677 3000780 - 3001190 + | hypothetical protein TERM 2701 3001211 - 3001242 + F 100 -10.1 -5.04868 | gap 1, opp_overlap 3001206 3001211, overlap 3001215 GCAAGACAAAGCGAA CCCGGC-GGCGAGG CGCTT CCTCGCCCGCTTGG TTTTGTTTGATTTGA TERM 2702 3001215 - 3001238 + F 76 -10.3 -3.89235 | gap 1, opp_overlap 3001206 3001211, overlap 3001211 GACAAAGCGAACCCG GC-GGCGAGG CGCTT CCTCGCCCGC TTGGTTTTGTTTGAT RPE_2678 3001382 - 3002362 + | arginase RPE_2679 3002410 - 3002724 + | hypothetical protein RPE_2680 3002983 - 3002726 - | hypothetical protein RPE_2681 3003219 - 3003419 + | hypothetical protein TERM 2703 3004084 - 3004070 - g 71 -2.7 -4.57569 | CGAGGCGCTGAAAAA GCTGC CGTTC GCCGC GCTGGCTTCCGAAGA RPE_2682 3003825 - 3004859 + | fructose-1,6-bisphosphatase RPE_2683 3004880 - 3005755 + | phosphoribulokinase TERM 2704 3005801 - 3005774 - f 76 -13.4 -3.13403 | gap 1, overlap 3005772 TGGGCTTTACGAATA GCGCGAGCCGACC GAC GGTCGGC-CGCTC TGACACCCTTCTCCA TERM 2705 3006611 - 3006593 - g 77 -10.3 -3.96216 | overlap 3006595 CGCGGAGGCAAAGAA CAGCGAC CGGCC GTCGCTG ATCGCCTGCCGCACC TERM 2706 3007012 - 3007027 + G 70 -10.4 -3.71527 | CCTCGCCGAACCTGC TCGGCG GCTC CGCCGA TTTGACTCATTCCAA RPE_2684 3005868 - 3007892 + | transketolase RPE_2685 3007937 - 3009022 + | fructose-1,6-bisphosphate aldolase RPE_2686 3009079 - 3010461 + | ribulose bisphosphate carboxylase TERM 2707 3010472 - 3010493 + F 100 -17.3 -3.85909 | opp_overlap 3010472 CCTGATCGACCAAAA GGCCGCGCA GCGA TGCGCGGCC TTTCAGTTTCCGTCA TERM 2708 3010493 - 3010472 - f 100 -17.3 -4.2828 | opp_overlap 3010472 CCTGATCGACCAAAA GGCCGCGCA GCGA TGCGCGGCC TTTCAGTTTCCGTCA RPE_2687 3010632 - 3011318 + | HAD family hydrolase RPE_2688 3011583 - 3011903 + | hypothetical protein TERM 2709 3011929 - 3011893 - T 78 -15.8 -2.70932 | gap 1 TGCTGGCGCGAATCA GGCTGCGCTAGCGCCGC CTCG GCGGCGCGAGGGC-GCC CATCGCAGCGCTCTC RPE_2689 3012362 - 3011943 - | hypothetical protein RPE_2690 3012687 - 3012463 - | hypothetical protein TERM 2710 3014746 - 3014761 + G 72 -11.8 -3.61398 | TCTGCCGGAGGAGGC CGCGGC GCGG GCCGCG TTCTTGCAGGACGCC RPE_2691 3013289 - 3015082 + | arginyl-tRNA synthetase TERM 2711 3015750 - 3015787 + G 73 -11.1 -3.63627 | ATGATGACCATCGTC GCCGTGCTGGCGCTGGC CGTG GTCGGCACCGGCGGGGC TTTCGCCTATCGCAC TERM 2712 3016088 - 3016061 - g 74 -12.6 -3.61398 | overlap 3016020 3016062 GGCGCCGGCCAACAA GCCGCTGGCTGG TCCG CCGCCCAGCGGC GACGAGCCGCGCAGG RPE_2692 3015189 - 3016580 + | sporulation domain-containing protein RPE_2693 3016626 - 3017654 + | Beta-N-acetylhexosaminidase TERM 2713 3017718 - 3017697 - g 83 -15.9 -3.53012 | GCCGCCCGGCCGAAA TCGTCGCCG AACT CGGCGACGA CGAACCGGCGCTGGT TERM 2714 3017810 - 3017755 - g 71 -14.6 -2.64616 | TGTCGAGGGATATGA GGGGCCGCTCGACCTTCTGCTGGCGC TGGC GCGGCAGCAGAAGGTGGACCTGCACA AGATCTCGATCCTGG RPE_2694 3017651 - 3018490 + | chromosome segregation and condensation protein ScpA RPE_2695 3018512 - 3019240 + | putative transcriptional regulator TERM 2715 3019570 - 3019524 - g 70 -10.9 -3.5774 | gap 2, overlap 3019525 3019528 ACCGAACCCGTGAAA TCGATCGATCACGCGGCGCCG CCGGCTT CGGCGCCGCG-GAGCGAT-GT CGGCAGCAAGGCCGT TERM 2716 3019567 - 3019528 - g 80 -17.2 -2.64651 | gap 1, overlap 3019525 3019524 AACCCGTGAAATCGA TCGATCACGCGGCGCCG CCGGCTT CGGCGCCGCG-GAGCGA TGTCGGCAGCAAGGC tatA 3019353 - 3019589 + | twin argininte translocase protein A RPE_2697 3019713 - 3020240 + | twin-arginine translocation protein TatB TERM 2717 3020461 - 3020500 + G 81 -15 -3.62096 | overlap 3020458 3020466 GGAATATTTCCTGAC CCAGCTGAAGCTGGCGCT GTTC GGCGCCGGCTTCATCTCG TTTCCGATCATCGCG TERM 2718 3020466 - 3020495 + G 79 -16.5 -3.01497 | overlap 3020458 3020461 ATTTCCTGACCCAGC TGAAGCTGGCGCT GTTC GGCGCCGGCTTCA TCTCGTTTCCGATCA TERM 2719 3021030 - 3021011 - g 75 -4.8 -4.66264 | overlap 3021001 3021012 3021013 GAAAAGGCCGAAAAA GCCGCGAC CGCC GACGCCGC GCCACCGCCCGACCC RPE_2698 3020237 - 3021061 + | Sec-independent protein translocase TatC TERM 2720 3021469 - 3021505 + G 73 -9.3 -3.96148 | AATCGTCGCGGTCGG GGTTGGCGTGCTGGCGG CTG CCGTCGGTGTGCTGGCC TTTGTGCTGCGGCAG RPE_2699 3021152 - 3021526 + | hypothetical protein TERM 2721 3022661 - 3022641 - g 79 -4.5 -4.7254 | opp_overlap 3022660, overlap 3022644 3022646 ATCCTCGACGAAAAA GAACTGCCG ATG CGGCTGACC GCGTTGACGCCGTGT TERM 2722 3022658 - 3022644 - g 77 -7 -4.47707 | overlap 3022641 3022646 CTCGACGAAAAAGAA CTGCCG ATG CGGCTG ACCGCGTTGACGCCG RPE_2700 3021753 - 3023183 + | seryl-tRNA synthetase RPE_2701 3023335 - 3023730 + | hypothetical protein RPE_2702 3024545 - 3023955 - | hypothetical protein surE 3024713 - 3025480 + | stationary phase survival protein SurE RPE_2704 3026023 - 3025655 - | response regulator receiver protein TERM 2723 3026120 - 3026143 + H 73 -6.8 -4.25283 | opp_overlap 3026117, overlap 3026125 GCAAATAACCGACTG CAAGGCAATG TCAA CATTGTTTTG TTTTGATCACGAAAT TERM 2724 3026125 - 3026138 + H 86 -5.3 -5.13722 | opp_overlap 3026117, overlap 3026120 TAACCGACTGCAAGG CAATG TCAA CATTG TTTTGTTTTGATCAC RPE_2705 3026222 - 3026869 + | protein-L-isoaspartate O-methyltransferase RPE_2706 3027031 - 3028410 + | peptidase M23B RPE_2707 3029177 - 3028788 - | hypothetical protein TERM 2725 3029136 - 3029100 - G 100 -19.6 -3.28924 | gap 2, opp_overlap 3029135 CAGCTTGCTCCAGAA CCGGC-GGCGCAG-ATCC TCA GGATGCTGCGCCAGCCGG TCGGCCTCATCGAGG TERM 2726 3029291 - 3029260 - R 93 -18.8 -3.29144 | gap 1, overlap 3029241 3029261 TCAGCGCGGCGACAA CGGCGC-GGCGATCG CGT CGATCGCCCGCGCCA GATCGACGTCGCGCG TERM 2727 3029290 - 3029261 - R 90 -20.1 -2.57344 | gap 1, overlap 3029241 3029260 CAGCGCGGCGACAAC GGCGC-GGCGATCG CGT CGATCGCCCGCGCC AGATCGACGTCGCGC phhB 3029550 - 3029245 - | pterin-4-alpha-carbinolamine dehydratase TERM 2728 3030416 - 3030441 + G 74 -10.3 -3.87994 | opp_overlap 3030395 3030393, overlap 3030417 3030434 CCGAAGCCATTTCGG CCTCGTCGCGC GACG GCGCGCCGAGC TTTCTGGCGATCGAT TERM 2729 3030417 - 3030440 + G 71 -13.8 -2.92475 | opp_overlap 3030395 3030393, overlap 3030416 3030434 CGAAGCCATTTCGGC CTCGTCGCGC GACG GCGCGCCGAG CTTTCTGGCGATCGA RPE_2709 3029719 - 3031149 + | TRAP transporter solute receptor TAXI family protein TERM 2730 3031456 - 3031479 + F 75 -12.4 -3.53779 | overlap 3031452 3031451 CGCAACGCGTCGAGT GCCCGGCC CTCCGTTT GGCCGGGC TTGCTGTTTTGGGGG TERM 2731 3033297 - 3033261 - g 88 -16.6 -3.66732 | overlap 3033264 3033286 3033287 CAAGCAGCTCAACAA CATCCGCACCACCTCG AAGGA CGAAGCGGTGCGGCTG ACGCCGCCGATCCGG TERM 2732 3033294 - 3033264 - g 80 -16.9 -2.64045 | overlap 3033261 3033286 3033287 GCAGCTCAACAACAT CCGCACCACCTCG AAGGA CGAAGCGGTGCGG CTGACGCCGCCGATC RPE_2710 3031630 - 3033453 + | GTP-binding protein TypA TERM 2733 3033481 - 3033507 + F 100 -22.4 -4.52589 | opp_overlap 3033481 ATATCGACATCAAAA GCCCGCCTTCGA GGA TCGAAGGCGGGC TTTTCTGTGCGCGCG TERM 2734 3033507 - 3033481 - f 100 -22.4 -4.36262 | opp_overlap 3033481 ATATCGACATCAAAA GCCCGCCTTCGA GGA TCGAAGGCGGGC TTTTCTGTGCGCGCG RPE_2711 3033740 - 3034210 + | peptidylprolyl isomerase TERM 2735 3034287 - 3034262 - T 74 -14.8 -2.54298 | overlap 3034261 3034259 GACATCGCACAACAG CCGGATCGAG CTAGTC CTCGATCCGG ACCCATTCCGACGCC TERM 2736 3034490 - 3034480 - T 73 -6.8 -4.3898 | ACCACTTGGATAAAA GGCA TCC TGCC GACTCACCTCGAGTA RPE_2712 3035217 - 3034654 - | hypothetical protein TERM 2737 3035196 - 3035227 + g 89 -17.2 -3.53012 | opp_overlap 3035198, overlap 3035197 GCGCCGCGAAAGAAG AAGCCCCGGCGTGC AGGC GCACGCCGGGGCGA TTTCGAAAGCCAGAA TERM 2738 3035197 - 3035226 + g 95 -20.7 -2.71712 | opp_overlap 3035198, overlap 3035196 CGCCGCGAAAGAAGA AGCCCCGGCGTGC AGGC GCACGCCGGGGCG ATTTCGAAAGCCAGA TERM 2739 3035225 - 3035198 - G 100 -24.2 -4.08557 | opp_overlap 3035197 3035196 GCCGCGAAAGAAGAA GCCCCGGCGTGC AGGC GCACGCCGGGGC GATTTCGAAAGCCAG RPE_2713 3035446 - 3035267 - | antenna complex, alpha/beta subunit RPE_2714 3035642 - 3035472 - | antenna complex, alpha/beta subunit RPE_2715 3036246 - 3036064 - | hypothetical protein RPE_2716 3036715 - 3036413 - | hypothetical protein TERM 2740 3036898 - 3036858 - R 100 -11.9 -5.19879 | opp_overlap 3036862, overlap 3036860 CTCGAAACACAAAAA TAGACCCGAACGCGC CGGAGAGAAGT GCGCGCTCGGGTCTT GCAGTTCGAGGCGTC TERM 2741 3036896 - 3036860 - R 100 -14.5 -4.22132 | opp_overlap 3036862, overlap 3036858 CGAAACACAAAAATA GACCCGAACGCGC CGGAGAGAAGT GCGCGCTCGGGTC TTGCAGTTCGAGGCG TERM 2742 3037214 - 3037196 - R 78 -10.4 -4.08216 | opp_overlap 3037186 CGATTGTTCGGAAAA GCCAATTT CGG AAATTGGC TCACTGAACTTTGCC RPE_2717 3037627 - 3037331 - | integrase TERM 2743 3038302 - 3038350 + G 100 -27 -3.15544 | gap 1, opp_overlap 3038276 GCAGGCCGGCAATCG GCTG-GCCTGAAGGGCAGCTTCA CCGC TGAAGCTGCCCTTCAGGCGCTGC TTGCTGGCACTGGAA RPE_2718 3037930 - 3038751 + | secretin/TonB short N-terminal domain-containing protein RPE_2719 3038915 - 3039460 + | ECF subfamily RNA polymerase sigma-24 factor TERM 2744 3039827 - 3039871 + G 77 -12.8 -3.63968 | gap 2, overlap 3039840 GATCGGCGGGGCGTT GGCGG-CG-ACCGCGGCGGCAG GCG CGGCCGTCATGGTGCGACCGCC TTTGCAGCTTTGGCC TERM 2745 3040407 - 3040385 - g 72 -13.4 -3.15861 | opp_overlap 3040376 TATCATTCTGATGAA TGCGGCGTTG GGG CAGCGCCGCA TTACCGCGCATTTCA RPE_2720 3039537 - 3040517 + | putative FecR TERM 2746 3040933 - 3040912 - g 70 -12.9 -2.94416 | GATGCGCACCACACA GGCGGCAGC GCGT GCGGCCGCC ACAGGCGGCGTGCCG TERM 2747 3041517 - 3041472 - g 82 -12.6 -3.90291 | gap 2, overlap 3041451 AGCGGCCGAACGAAA GCCTGGCCG--CATGCGTGCCG GGAG CGCCATGCACGACCGGCCAGGC GGCGCCTTACGTCCC TERM 2748 3041818 - 3041828 + G 72 -8.2 -4.08767 | opp_overlap 3041785, overlap 3041795 CGCCGGAATCGCCAC CGCC TAC GGCG TTTTCGGGAAGTCCG TERM 2749 3045353 - 3045334 - g 78 -10 -4.07568 | GGCGCCGCCCGAAAA GCGCATCA CCAT CGATGCGC CGGTGGTCGCCCAGA TERM 2750 3045541 - 3045589 + G 74 -16 -2.62933 | gap 2 CGGCCGGATCTGGCT CGCCGGCGGCAACG-GCATC-GCC GCC GGCTGGTACACGCTGCTGCCGGCG TCCTATGCGCGGTTG TERM 2751 3047705 - 3047674 - g 78 -15.9 -3.14132 | gap 1 CGGCCTGGTGATGAA CAGTGGCGCCGTGC TGCTC GC-CGGCGCCACCG ACACCGTCGACCATC RPE_2721 3040637 - 3052345 + | hypothetical protein TERM 2752 3053318 - 3053284 - g 78 -10.5 -4.15044 | overlap 3053285 CGCGGGGTGAACAAA CCGGCGGCGGCGCTG CGGAC CGACGCCGACGCCGC CTTCAAGCGCAACGA TERM 2753 3053317 - 3053285 - g 73 -14 -3.08812 | overlap 3053284 GCGGGGTGAACAAAC CGGCGGCGGCGCTG CGGAC CGACGCCGACGCCG CCTTCAAGCGCAACG TERM 2754 3055096 - 3055124 + G 72 -8.8 -4.10657 | gap 1 ATCGAAGGCGATCTG CTGGT-CGCGCCG GCAT CGGGGCGGACCGG TTTTGCCGGCTATCA TERM 2755 3055604 - 3055559 - g 72 -11.7 -3.52073 | opp_overlap 3055596 3055599 3055601, overlap 3055599 3055600 CGGTGAAGACCACAA GGCGGGTGGCGGACGGCGATC TCAC GATCGCCGCCGACAAGCCGGC GCGGCTGAGTTTTGC TERM 2756 3056502 - 3056538 + G 81 -5.1 -4.8048 | opp_overlap 3056475 3056474 TGTCGACGTCACGGT GCGCGATCCG-GTGGTG CTGAC CACCACGCTGC-CGCGC TTTTTGCTCTCGGGC TERM 2757 3056806 - 3056818 + G 75 -9.1 -4.07568 | GCGCTCGACGTCAAG GCTGC GAC GCAGC TTTTGGCGCGACGCA TERM 2758 3056887 - 3056931 + G 73 -13.6 -3.28924 | gap 2, overlap 3056873 3056888 GGCTCGGACATGTTC TCCGACCTGGTGTCCGGCACCG GCG CGGTGTCGGTC-TC-GGTCGGG TTGTCGACCGCGCTC TERM 2759 3056888 - 3056930 + G 71 -14.9 -2.57211 | gap 2, overlap 3056873 3056887 GCTCGGACATGTTCT CCGACCTGGTGTCCGGCACCG GCG CGGTGTCGGTC-TC-GGTCGG GTTGTCGACCGCGCT TERM 2760 3057448 - 3057430 - g 72 -11.7 -3.57263 | opp_overlap 3057432 ACGCCGATTGCGAAA GCGCAGC TCGCC GCTGCGC TGGCGCTGGTCGGCG TERM 2761 3057850 - 3057818 - g 100 -13.3 -4.58395 | opp_overlap 3057818, overlap 3057819 3057825 GCCAGCCGCTAAAAA TCACCAACACCGGCG ACG CGCCGGTGCAGGCGG TGATCTCGGTGTCGG TERM 2762 3057849 - 3057819 - g 86 -16.8 -3.34716 | opp_overlap 3057818, overlap 3057818 3057825 CCAGCCGCTAAAAAT CACCAACACCGGCG ACG CGCCGGTGCAGGCG GTGATCTCGGTGTCG TERM 2763 3057843 - 3057825 - g 82 -16 -3.4158 | opp_overlap 3057818, overlap 3057819 3057818 GCTAAAAATCACCAA CACCGGCG ACG CGCCGGTG CAGGCGGTGATCTCG RPE_2722 3053125 - 3058341 + | alpha-2-macroglobulin domain-containing protein TERM 2764 3058364 - 3058399 + G 71 -9.7 -3.78934 | gap 1, opp_overlap 3058362 3058361, overlap 3058365 CCTCACCACAAATGC TGCGT-CATGCCCGGG CTTGT CCCGGGCATCCACGCC TTCTTCTACCGAAGG TERM 2765 3058454 - 3058421 - g 75 -13.2 -3.46783 | gap 1, overlap 3058419 TACCGAAGGCAAAGA CGTG-GATGGCCGGG ACAAG CCCGGCCATGACACG GGGAGGCGGTGGAAG RPE_2723 3058338 - 3060530 + | penicillin-binding protein 1C TERM 2766 3061459 - 3061507 + G 70 -11.5 -3.36803 | opp_overlap 3061458, overlap 3061469 3061471 GCTGAGCAAGATCAC CAGCGGGATGGAGTCGCACGGCG CGC CGCCCGGCGTCTATTTCCTGCTG TTCTGGGTGACGTTC TERM 2767 3062179 - 3062197 + G 77 -13.1 -3.53012 | ATTCGCGCTGGTGGA GGCGCGC ACCGA GCGCGCC TTTGCCGCGCGCGCC RPE_2724 3060581 - 3062320 + | glycosyl transferase family protein RPE_2725 3062331 - 3063176 + | phosphoesterase, PA-phosphatase related TERM 2768 3063190 - 3063180 - f 90 -8.2 -4.83169 | overlap 3063181 ATCGCCCCATAAAAA GCGG GCT CCGC GACCCGCTGTCAGGC RPE_2726 3063249 - 3063989 + | glycosyl transferase family protein RPE_2727 3063989 - 3064327 + | lipid A biosynthesis domain-containing protein RPE_2728 3065541 - 3064354 - | cystathionine beta-lyase TERM 2769 3064821 - 3064792 - G 77 -5.5 -4.59773 | opp_overlap 3064803, overlap 3064794 GCGCAGCGCCAAAAA CACGTCGTCCGGG CCGG CGCAGACGCCGAG CGCGCGCACCGCCTC TERM 2770 3065608 - 3065581 - H 86 -6.9 -5.00616 | gap 1, opp_overlap 3065598 3065605, overlap 3065582 3065583 CGGGTGCCGAAAAAA GC-CGCGCCGCG TGCAT CGCAGCGGGAGC CGATGGCTGTTCCTA RPE_2729 3065874 - 3066887 + | cationic amino acid ABC transporter, periplasmic binding protein TERM 2771 3067121 - 3067145 + G 70 -13.6 -3.01712 | GCAGACCGCGGGATT CGGGGTCAGC CAGGC GCTGATCCCG TATTCCGAAAGCGAC TERM 2772 3067394 - 3067418 + G 78 -10 -4.05033 | overlap 3067388 3067397 GCCCAGTCCGCGGCA GAGCGTGTCG CTGTT CGACGCGTTC TTTCTCTCCAATCGC RPE_2730 3066906 - 3068111 + | polar amino acid ABC transporter, inner membrane subunit TERM 2773 3069281 - 3069316 + G 79 -16.2 -3.01712 | gap 1, opp_overlap 3069273 CAAGCCATTCCGCGC GGACAGGCGGAG-GCGT CGA GCGCGCTCGGCCTGTCC TATTGGAAGACCACC RPE_2731 3068108 - 3069610 + | polar amino acid ABC transporter, inner membrane subunit RPE_2732 3069627 - 3070367 + | ABC transporter related TERM 2774 3070934 - 3070904 - T 71 -12.5 -3.05816 | GGACGCCGCATCCAA CCAGGCTTCCGGC GCCAT GCCGAACGCCCGG TCATCGCCGTCCCGG TERM 2775 3070938 - 3070965 + T 70 -12.6 -2.88544 | CCGAACGCCCGGTCA TCGCCGTCCCGG TTGC CCGGTTCGGCGA TCTGTCCCGCTCAAC RPE_2733 3071377 - 3071093 - | hypothetical protein RPE_2734 3072731 - 3071694 - | cysteine synthase A TERM 2776 3072298 - 3072344 + g 70 -10 -3.6501 | overlap 3072289 TTGGCCCAGATCGCG CCGTTCGGTTCGCTCGCGGC CAGTTGC GCGGCGAGCCGGCCGGACAG TTTGACGTAGTTGTT RPE_2735 3074066 - 3072840 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 2777 3072959 - 3072939 - G 74 -12.5 -3.55071 | CCACAGCCGCCGAAA CCGCTCGTC GAA GCCGAGCGG CGTCAAGGTCGGCCA TERM 2778 3073495 - 3073456 - G 72 -8.4 -4.10925 | gap 1, opp_overlap 3073456 3073460 ACATATTCGGCAAAA CCGCCCCAGCCGCAGCCGA TCT CCAGCAGCCGCTGGC-CGG GTTTCAGGTCGATCG RPE_2736 3075016 - 3074189 - | hypothetical protein RPE_2737 3076330 - 3075020 - | amine oxidase RPE_2738 3076334 - 3076576 + | hypothetical protein TERM 2779 3076899 - 3076931 + G 79 -13.4 -3.64703 | gap 1, opp_overlap 3076877 3076878 CGGCTGACCACGCGT GACGCGCCGCC-GTC GCTC GACTGGTGGCGCGGC TTTCGGTCGCGGGAG TERM 2780 3077196 - 3077174 - g 74 -12.6 -3.61398 | TTTCTGGGGCAAGAA CCGCGACGCG ACG CTCGCCGCGG AAGAAACCGCCAGCG RPE_2739 3076743 - 3078164 + | RND efflux system outer membrane lipoprotein TERM 2781 3078317 - 3078302 - g 81 -11.8 -3.91911 | TTCAGCCGAAGCAAA GCGCCG AGCG CGGCGC GCGGCCGGACATGGC TERM 2782 3079361 - 3079306 - g 78 -15.5 -3.07994 | gap 3, overlap 3079340 GCCAATCTGACCGAA GGCGCCAAGGTCCG-CGTCGGCAGC-GG CGA CCAGACGCCGAAGCCGGACCTCG-CGCC GCGCAAGCGGCAGGG RPE_2740 3078154 - 3079434 + | RND family efflux transporter MFP subunit TERM 2783 3082125 - 3082151 + G 79 -16.6 -3.01924 | CGCTGCCCTCCGCCG GCGTCGGCGCCA TCC TGGCGCTGATGC TGTTCGGGCAGGATC TERM 2784 3082343 - 3082399 + G 77 -13.6 -3.60296 | gap 1, overlap 3082344 ATGACGACCTTGGCG GCGCTGTTCGGCG-CGTTGCCGCTGGC GATC GAGAGCGGCACCGGCGCCGAATTGCGG TTTCCGCTCGGCATC TERM 2785 3082344 - 3082398 + G 80 -17.1 -2.75963 | gap 1, overlap 3082343 TGACGACCTTGGCGG CGCTGTTCGGCG-CGTTGCCGCTGGC GATC GAGAGCGGCACCGGCGCCGAATTGCG GTTTCCGCTCGGCAT RPE_2741 3079448 - 3082570 + | acriflavin resistance protein RPE_2742 3082570 - 3085674 + | acriflavin resistance protein TERM 2786 3085818 - 3085794 - g 78 -9.9 -4.07568 | CCCGCGCTGCCAAAA GCCGCAACCGC TGT GCGTCTGCGAC AGCGTGACGCCGCTG TERM 2787 3086445 - 3086427 - g 75 -4.5 -4.67234 | gap 1, overlap 3086429 ACCGAAGCCGAAAAA GCGC-GAC TACC GCCGGCGC AAGAAAGCCTGATCG RPE_2743 3085723 - 3086457 + | DTW domain-containing protein TERM 2788 3086510 - 3086452 - f 76 -8.4 -4.15044 | gap 4 CGCCGGCGCAAGAAA GCCTGATCGGCTTCGGTTGCCTAT-CGGCC AGA GGCCGTATAAG-AACC-A-GCCGATGGGGC CACGTGGCGGAGTGG TERM 2789 3086589 - 3086604 + F 74 -4.8 -4.58283 | GGCCTCCAGAAATCT TTTTGA GCAC TCAAAA TTTTTCAAGCCCTTA TERM 2790 3086664 - 3086691 + F 77 -12.6 -3.53811 | opp_overlap 3086680 CGGGCTGCCGGCCGG GCGGACAGCGGG AAAT CCGGCTGCCCGC TTTGGACGGCCTCGA RPE_2744 3086954 - 3087154 + | hypothetical protein RPE_2745 3087611 - 3087435 - | hypothetical protein TERM 2791 3087803 - 3087779 - R 78 -14.4 -3.05596 | opp_overlap 3087782, overlap 3087782 GAGCGGTCGACGCAA GAATGCCTCC ACTGA GGAGGCATTC TCACGGCTAACTCAT TERM 2792 3087800 - 3087782 - R 70 -10.3 -3.67597 | opp_overlap 3087782, overlap 3087779 CGGTCGACGCAAGAA TGCCTCC ACTGA GGAGGCA TTCTCACGGCTAACT RPE_2746 3088190 - 3087825 - | hypothetical protein TERM 2793 3088573 - 3088563 - H 79 -8.2 -4.30719 | overlap 3088564 CGTGGCTATAACAAA GCCG CTT CGGC TTGCAAAGCGGGAAA TERM 2794 3089006 - 3089049 + H 82 -11.5 -4.08692 | gap 1, overlap 3089011 3089013 TTAGCGCTGTCGAAC CGGCCCCCGCCGGGCCGGCC ACGAG GGCCGGCCC-GCGTGTTGCG TTTTCAAACACCTTG TERM 2795 3089011 - 3089044 + H 91 -17.4 -3.36823 | gap 1, overlap 3089006 3089013 GCTGTCGAACCGGCC CCCGCCGGGCCGGCC ACGAG GGCCGGCCC-GCGTG TTGCGTTTTCAAACA TERM 2796 3089013 - 3089042 + H 93 -18.6 -3.25113 | gap 1, overlap 3089011 3089006 TGTCGAACCGGCCCC CGCCGGGCCGGCC ACGAG GGCCGGCCC-GCG TGTTGCGTTTTCAAA RPE_2747 3089123 - 3089791 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 2797 3089849 - 3089821 - f 75 -3 -4.84017 | gap 1, overlap 3089824 AATGCTGGAGAAAAA CCAGG-TGTGGCG AGAA CGCCCCAGCCCCG TACTTTCCGTCGGGG TERM 2798 3091039 - 3091019 - g 72 -14.7 -2.78463 | opp_overlap 3091036 AGGTGCGCGATCAGA CCCGCGCCA GCG TGGCGCAGG CCTGGGGCCAGTTGC RPE_2748 3089980 - 3091377 + | TolC family type I secretion outer membrane protein TERM 2799 3091877 - 3091862 - g 72 -11.8 -3.60792 | GCCGGAACCCGTAAA GGCCGC GCCC GCGGCC AAGGCGCCCGCCATG TERM 2800 3092071 - 3092094 + G 77 -5.2 -4.62069 | gap 1, opp_overlap 3092051 3092050, overlap 3092054 3092055 CCGCACCGCCGGAGG CCTTG-CCGCC GGA GGAGGACGAGG TTTTTGACCTGACCG RPE_2749 3091719 - 3092486 + | hypothetical protein TERM 2801 3093490 - 3093459 - g 81 -7.8 -4.59773 | overlap 3093460 3093478 3093481 TCCGACCCGGAAAAA GGCTCCGGCGCGGT CAAG ATCACGCCGGCGCA CGACTTCAACGATTT TERM 2802 3094090 - 3094042 - g 71 -14.5 -2.57795 | TCGAGCAGGAAGTGA TCACGCCCGAGCAGGCCCACGAC ATG GCGGTGGACCCGATCAAGCGCGA GGGTTTTATCACCCG TERM 2803 3095442 - 3095423 - g 100 -10.7 -5.42605 | GGAAGAAAAAGAAAA GCGCGAC GCCGCG GTCGCGC GCAAGGAAAAGATCC valS 3092595 - 3095492 + | valyl-tRNA synthetase RPE_2751 3096235 - 3095603 - | 3-methyladenine DNA glycosylase TERM 2804 3095716 - 3095736 + g 73 -11.1 -3.64822 | TGATTCCGATCCGCA CGCCGGC CGCAATC GCCGGCG TTTCGGTCCGCGCAT TERM 2805 3096459 - 3096423 - g 75 -14.3 -3.2375 | opp_overlap 3096446 3096450, overlap 3096418 TATCCGACAAGCCAA TCCGTCCGCGCCACCCC GAA AAGGCGGCGCGGCCCGA CGCGTTGTCGCCGAA TERM 2806 3096578 - 3096550 - g 77 -8 -4.41494 | CATCGTCAAGGAAAA CGGCCTGCACAC CGTGT GCGAGGAGGCCG GCTGCCCCAATATCG TERM 2807 3097313 - 3097346 + G 85 -10.4 -4.19817 | gap 3, opp_overlap 3097313, overlap 3097315 GCGGATTTCGCCAAA CTGCAG-GCGGC-GCGC GCC GCGCTGCCGCGCTG-AG TTTTCGATCAATGCC RPE_2752 3096386 - 3097345 + | lipoyl synthase RPE_2753 3097357 - 3097833 + | cyclase/dehydrase TERM 2808 3097830 - 3097850 + T 73 -3.3 -4.68103 | gap 1, opp_overlap 3097821, overlap 3097830 3097831 3097833 CAACCAGGTGCCGGT G-TAGGCG CCGCTT CGCCTAGC TTTTCTTCGGCTTGG RPE_2754 3098460 - 3097846 - | CinA domain-containing protein RPE_2755 3099656 - 3098460 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 2809 3099924 - 3099961 + G 70 -8.3 -3.92373 | gap 1 TACCACGCCGTGAAC CGCTGCGGATCGGCGGAT TCG AACTGGCGAACCGC-GCG TTTCTGGCTCCGATG RPE_2756 3099893 - 3100927 + | nifR3 family TIM-barrel protein TERM 2810 3102075 - 3102037 - g 70 -11.1 -3.51694 | gap 2 AAGAACTACAATCAA GGCATCGGCGAGGACGCAC CGG GGACGTCCTC-CC-ATGCC GGTCCGACGTCAAGA RPE_2757 3100924 - 3102093 + | signal transduction histidine kinase, nitrogen specific, NtrB TERM 2811 3102762 - 3102810 + G 70 -3.6 -4.57073 | gap 1, opp_overlap 3102767, overlap 3102769 CGCCTTCACCGGCGC CAACACCCGCGCCTCCGGCCGGT TCGA GCAGGCCGAGGGCG-GCACGTTG TTTTTGGACGAGATC TERM 2812 3103055 - 3103073 + G 81 -8.8 -4.44046 | AGCACATCGAGGATC TGCCGGAC CTG GTGCGGCA TTTCTTTGCCCTGGC TERM 2813 3103352 - 3103377 + G 70 -11.1 -3.55219 | gap 1, overlap 3103372 CGCACTTTTCGAGCT TCCCGAACGGCG TGC CGCCGC-CGGGA TTGTATCATCGGATT RPE_2758 3102103 - 3103545 + | nitrogen metabolism transcriptional regulator NtrC TERM 2814 3104393 - 3104406 + G 70 -3.7 -4.57073 | GCCAGGAATTCGACA CCCCG GCGC CGGAG TTTTTGAGCAACGTC RPE_2759 3103729 - 3106020 + | multi-sensor signal transduction histidine kinase TERM 2815 3106337 - 3106304 - g 71 -9.4 -3.76641 | opp_overlap 3106304 3106305, overlap 3106298 3106305 ACGGCAACATCGAAA CCGCGGTCGCCGCG ATCAAG CGCGGCGCCTACGA TTTCATCGAAAAGCC TERM 2816 3106689 - 3106660 - g 72 -12.9 -3.09933 | overlap 3106683 CCGGAACTGATGGAA GTCGAACTGTTCG GCAT CGAACAGGCCGAC GGCGATCAACCGCGC RPE_2760 3106036 - 3107406 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 2817 3107609 - 3107555 - g 75 -11.4 -3.63627 | gap 3 CTGCGAGATTCGAAA CGCCCGC-ATCGTCGACATGCCGCGCC ATTT GGCGCGGC-TGCAG-CGCTCGCTGGCG GAGCTACGGATCGCA RPE_2761 3107436 - 3108293 + | D-amino acid aminotransferase TERM 2818 3108500 - 3108484 - g 100 -4.4 -5.93809 | gap 1, overlap 3108486 TCGGGACAAAAAAAA TG-GCGG CCGA CCGCGCA CAAAACCTTCAAGAC hfq 3108483 - 3108731 + | RNA-binding protein Hfq RPE_2763 3108743 - 3110110 + | GTP-binding protein, HSR1-related TERM 2819 3111446 - 3111431 - g 72 -11.8 -3.61517 | opp_overlap 3111430 3111429 ATTCCTGCTCAACAA GGCGCG CGAC CGCGCC CATATTTTGGTCGGC RPE_2764 3110283 - 3113039 + | DNA gyrase subunit A TERM 2820 3113093 - 3113068 - T 100 -17.5 -3.75153 | opp_overlap 3113054 CGCTCTGAATCGAAA GGCCCCCGGCG GGCA CTCCGGGGGCC TTCGAGAGCGCTCTT RPE_2765 3113400 - 3113143 - | hypothetical protein TERM 2821 3113421 - 3113436 + H 91 -6.8 -5.26316 | overlap 3113422 TCCCCTGTCAAATTC TGGGTC GTTC GACCCG TTTTTTGTCGCGTCC coaD 3113720 - 3114217 + | phosphopantetheine adenylyltransferase TERM 2822 3114209 - 3114222 + F 76 -9.5 -4.08706 | opp_overlap 3114207 CTCAAGACCAAATTC GCCGG TTGA CCGGC TTTCTCTGATCCCGG RPE_2767 3114245 - 3114808 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 2823 3114859 - 3114814 - f 70 -12.5 -2.83409 | gap 1, opp_overlap 3114820 CATCAAGTGAGGACA TCCGAT-GCAGCCGTGGCGCAG CAG CTTCGTCGCGGCAGCGATCGGA ATATCGCTCGGATTG RPE_2768 3114818 - 3115258 + | hypothetical protein RPE_2769 3115255 - 3115704 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 2824 3115773 - 3115791 + F 80 -5.8 -4.72272 | opp_overlap 3115758 3115755, overlap 3115774 TGGATTGCCGGGTCG AGCCCGGC AAT GACGGGCA TTTTTGATGCGCACC queA 3115798 - 3116874 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 2825 3117806 - 3117787 - g 71 -9.2 -3.78775 | opp_overlap 3117785 3117800 CGCTGGACGAGGAAA GCGCGTGG CCAT CGACGCGC AATTGCTCGCGCGCC TERM 2826 3117984 - 3117964 - g 100 -15.4 -4.36914 | GGTTCCGCGACAAAA CCCGCGCC GACTG GGCGCGGG GGGATATCGATGCTC tgt 3116871 - 3118004 + | queuine tRNA-ribosyltransferase RPE_2772 3118245 - 3118027 - | hypothetical protein RPE_2773 3118528 - 3118280 - | hypothetical protein RPE_2774 3118558 - 3119538 + | cysteine synthases TERM 2827 3119710 - 3119688 - g 83 -12.6 -4.15044 | GCTGCCTTCAAGAAA GCCACCGCCA AGC CGGCGGAGGC GCCGCCGACGCCCGT RPE_2775 3119616 - 3119855 + | hypothetical protein RPE_2776 3120132 - 3120329 + | hypothetical protein RPE_2777 3120791 - 3120426 - | hypothetical protein TERM 2828 3120908 - 3120879 - R 84 -13.6 -3.81461 | AAACATGAATTGAAA CGCTGACGCGAA GCCAGG TCCGCGCCAGCG CAGGGCGGCGTGATC RPE_2778 3121530 - 3120922 - | triple helix repeat-containing collagen TERM 2829 3121344 - 3121362 + g 81 -7.4 -4.58395 | overlap 3121346 AGAACCGAAATCGTC GCGAAGAG GAG CTCTTCAC TTTTTGGCCGCTGCC TERM 2830 3121970 - 3121945 - H 95 -10.3 -4.52589 | opp_overlap 3121944 3121943, overlap 3121947 TCGCGGGACAGAAAA GAGCCCCCGGT CAGG ACCGGGGGCAA GGTCTTTGGAAGAGG TERM 2831 3121968 - 3121947 - H 100 -17.3 -3.87627 | opp_overlap 3121944 3121943, overlap 3121945 GCGGGACAGAAAAGA GCCCCCGGT CAGG ACCGGGGGC AAGGTCTTTGGAAGA RPE_2779 3122169 - 3122591 + | hypothetical protein TERM 2832 3122624 - 3122644 + T 100 -14 -5.93809 | GGCCAGAGGCCCCAG CCGGCGTG TGACC CACGCCGG TTTTTTTTCTGGGCC TERM 2833 3122857 - 3122895 + T 74 -14.7 -2.62933 | opp_overlap 3122857 AGGCTATTCAAGGAA TGAGCTTAGGGAGCGCA CTTCA TGCGGTTCCTGAGCTCA TGGTGTGCCGGATTC RPE_2780 3125733 - 3122914 - | glycosyl transferase family protein TERM 2834 3124539 - 3124568 + g 74 -9.9 -3.77196 | gap 1 CTTTCCACAGCCGTT TCGGC-CCGCGGCC GAA GGCCACGGCGGCGA TTTCCTCGATCCTGG TERM 2835 3125170 - 3125153 - G 77 -6.9 -4.56597 | TGCTTGTCGGAAAAA CCTTCCC AATA GGGCAGG ATGTGGGCGGCGATG RPE_2781 3126473 - 3125916 - | hypothetical protein TERM 2836 3127433 - 3127489 + G 93 -19.4 -2.62616 | GGGAGACCGGCTGGC CCAGCGCC-GGCCGGATGCGCGAAGGCG CGC TGCCGTCTCGCG-CCAGCCAGGCGCTGG TGGTGTCGGAAATCC TERM 2837 3128118 - 3128129 + G 70 -3.6 -4.44046 | overlap 3128104 CGCGTCGCTGACCAT GGCG GTGC TGCC TTTCTTTGCCCTGGC RPE_2782 3126679 - 3128337 + | putative beta (1-6) glucans synthase RPE_2783 3128677 - 3128297 - | hypothetical protein RPE_2784 3130139 - 3128742 - | hypothetical protein RPE_2785 3130307 - 3131665 + | nucleotidyl transferase RPE_2786 3131814 - 3133643 + | D-fructose-6-phosphate amidotransferase TERM 2838 3134607 - 3134575 - g 75 -13.3 -3.48378 | overlap 3134573 ATTCGCAGAAGAAGA TCGCCGCACTCGCGG CCA CCGCGATGGCTGCGA AAAAGGTCCCCGGAG TERM 2839 3134626 - 3134612 - g 70 -4.2 -4.57073 | overlap 3134613 3134625 GATGGCTGCGAAAAA GGTCCC CGG AGAACC TGAATCGGCGTTCTC RPE_2787 3133887 - 3134690 + | hypothetical protein RPE_2788 3136800 - 3134701 - | DEAD/DEAH box helicase domain-containing protein TERM 2840 3134749 - 3134787 + g 70 -5.9 -4.29928 | gap 2, opp_overlap 3134754 3134758, overlap 3134754 3134754 GCGCTCGTAGAGATA CAGAA-GG-CAGCGCAGCG CTT CGCCGCGCGGGCCTTTCAG TTTTGGGTCTTCCTT TERM 2841 3134754 - 3134781 + g 73 -9 -3.9373 | gap 1, opp_overlap 3134754 3134758, overlap 3134754 3134749 CGTAGAGATACAGAA GG-CAGCGCAGCG CTT CGCCGCGCGGGCC TTTCAGTTTTGGGTC TERM 2842 3134780 - 3134754 - G 75 -11.4 -3.66896 | opp_overlap 3134749 3134754 3134754, overlap 3134758 CGTAGAGATACAGAA GGCAGCGCAGCG CTT CGCCGCGCGGGC CTTTCAGTTTTGGGT TERM 2843 3136759 - 3136723 - G 75 -9.3 -4.05245 | overlap 3136718 3136755 3136756 GAGCAGATAACGAAA CAGCTTGTCCTGCTTCG GGC CGACGCCGGAAAGGCTG GTGACCAGCGCGAAC TERM 2844 3136917 - 3136933 + H 84 -10.8 -4.19238 | CGTCTATACCGAGCC GCCCGG CACGT CCGGGC TTTTGGCGTTCAAAG TERM 2845 3136933 - 3136949 + H 72 -3.7 -4.59773 | CCCGGCACGTCCGGG CTTTTGG CGT TCAAAGG TTTTTGCACATGACG RPE_2789 3136959 - 3137249 + | hypothetical protein TERM 2846 3137514 - 3137531 + G 75 -9.1 -4.07568 | overlap 3137518 AGCCCTACGACCGGG TGTCGCC GCAT GGCGGCA TTTTGGCGCAACGCC RPE_2790 3137246 - 3140785 + | transcription-repair coupling factor RPE_2791 3142027 - 3140792 - | hypothetical protein RPE_2792 3143612 - 3142080 - | putative acid-CoA ligase RPE_2793 3145470 - 3143617 - | extracellular solute-binding protein TERM 2847 3145941 - 3145899 - g 89 -18.3 -3.29461 | gap 1, opp_overlap 3145912, overlap 3145900 GAAGGCCGCGCAGAA GGGCGGCGCTCCCGCC-GCG CCCG CGCCGGCCGGTGCGCCGCCG GCCGACCAGCAGGTG TERM 2848 3145940 - 3145900 - g 100 -21.8 -2.57463 | gap 1, opp_overlap 3145912, overlap 3145899 AAGGCCGCGCAGAAG GGCGGCGCTCCCGCC-GCG CCCG CGCCGGCCGGTGCGCCGCC GGCCGACCAGCAGGT RPE_2794 3145705 - 3146481 + | invasion associated locus B TERM 2849 3146525 - 3146502 - T 100 -13.8 -4.86621 | opp_overlap 3146502 AGCGCCAATCAAAAA GGGGAGTCCG GTTT CGGGCTCCCC TTTTTCGTATCGGTG TERM 2850 3146502 - 3146525 + T 100 -16 -4.81551 | opp_overlap 3146502 AGCGCCAATCAAAAA GGGGAGTCCG GTTT CGGGCTCCCC TTTTTCGTATCGGTG RPE_2795 3146909 - 3146577 - | hemimethylated DNA-binding region TERM 2851 3147640 - 3147670 + G 70 -11 -3.54424 | opp_overlap 3147616 3147617 GCCGGTGGCGCTGTT CGTGCTCGGCGTCA CCG TGGCGCTGCGCCCG TTTGGGCGCGTGCCG RPE_2796 3147011 - 3147973 + | auxin efflux carrier RPE_2797 3149184 - 3147982 - | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 2852 3149553 - 3149568 + G 71 -9 -3.75933 | overlap 3149532 GGTCGGGCGAGGTGC TCGACC TGGT GGTCGA TTTCGTCACCTATGT TERM 2853 3149975 - 3149961 - g 72 -11.4 -3.53012 | opp_overlap 3149949 GCCTGGCGGTGCAAA TCGCGC TGT GCGCGA TCGCGCTGTACATCC RPE_2798 3149303 - 3150037 + | phosphatidylcholine synthase TERM 2854 3150176 - 3150160 - g 82 -11.5 -4.08767 | opp_overlap 3150163 CGGATCCCGCCAAAA CAGGCGC AAC GCGCCCG GCAGATCGGGCTGAC TERM 2855 3150380 - 3150408 + G 70 -10.3 -3.62572 | gap 2, overlap 3150379 3150402 ACGCCGACGAGGAGG CGC-CCGC-GCCG AAGGG CGGCGGCGGCGCG TTTGCGATGGTGATC RPE_2799 3150034 - 3150789 + | integral membrane protein TerC TERM 2856 3151275 - 3151303 + G 76 -14.5 -3.1978 | overlap 3151273 CGGCCATCGCATTCT GGTGCACGCCGCC GCC GGCGGCGTGGGTC TCTTGATGTGCCAAT RPE_2800 3150844 - 3151818 + | alcohol dehydrogenase RPE_2801 3152618 - 3152824 + | hypothetical protein TERM 2857 3154301 - 3154327 + G 70 -3.5 -4.46669 | opp_overlap 3154300, overlap 3154293 3154321 GCTGATCGAACAAGG CGGTCAGGACG AGTTG CGACCAAACCG TTTGTTCCTTTTGCT RPE_2802 3152885 - 3154705 + | hypothetical protein RPE_2803 3154966 - 3154772 - | plasmid stabilization system protein TERM 2858 3155061 - 3155049 - R 72 -4.1 -4.56597 | overlap 3155050 GCCTCCGGCGAAAAA CTGGA TCA TCCAA GGCGTCGCGGCGAGG RPE_2804 3155341 - 3155054 - | hypothetical protein RPE_2805 3155827 - 3155618 - | hypothetical protein RPE_2806 3156403 - 3155969 - | hypothetical protein RPE_2807 3156688 - 3157617 + | short-chain dehydrogenase/reductase SDR TERM 2859 3158698 - 3158676 - g 77 -10.4 -3.93963 | opp_overlap 3158671, overlap 3158677 ACCACCACCCACAAA TCGCTGCGCG GCC CGCGCGGCGG CCTGATCCTGTGCAA TERM 2860 3158697 - 3158677 - g 72 -13.9 -2.95896 | opp_overlap 3158671, overlap 3158676 CCACCACCCACAAAT CGCTGCGCG GCC CGCGCGGCG GCCTGATCCTGTGCA glyA 3157953 - 3159254 + | serine hydroxymethyltransferase TERM 2861 3159483 - 3159457 - g 75 -14.4 -3.24289 | overlap 3159452 3159450 AGGTGAAAGACTCAA GGCCCACCGAGG ATT CCTCGGTGATCC GGCGGCGGCGGGTGT RPE_2809 3159408 - 3159890 + | transcriptional regulator NrdR TERM 2862 3159946 - 3159931 - g 72 -11.8 -3.53779 | opp_overlap 3159935, overlap 3159927 CGCGGAAAAGAGCAA GGCCGC GAAG GCGGCC GACCTGCGCTATATG TERM 2863 3160099 - 3160141 + G 70 -13.4 -3.02202 | overlap 3160103 GCCGCATGCCGAGGT CGAGGCGCTGGCGCGC-GCC GGCGA GGCCGCGCGC-GGCGCTACG CTTTATGTGACGCTG TERM 2864 3160103 - 3160142 + G 89 -15.1 -4.04206 | gap 3, overlap 3160099 CATGCCGAGGTCGAG GCGCTGGCG-CGCGC-CGGC GAG GCCGCGCGCGGCGCTA-CGC TTTATGTGACGCTGG TERM 2865 3160719 - 3160686 - g 81 -14.5 -3.53444 | gap 1, opp_overlap 3160695, overlap 3160657 3160687 TGATCGCGGCGGAAA CCGCCGAGGC-CGCCG CCG CGGCGCGGCTCGGCGC CGCCGGCGCGCAGGT TERM 2866 3160718 - 3160687 - g 85 -18 -2.71924 | gap 1, opp_overlap 3160695, overlap 3160657 3160686 GATCGCGGCGGAAAC CGCCGAGGC-CGCCG CCG CGGCGCGGCTCGGCG CCGCCGGCGCGCAGG RPE_2810 3159887 - 3161038 + | riboflavin biosynthesis protein RibD RPE_2811 3161038 - 3161646 + | riboflavin synthase subunit alpha ribH 3161791 - 3162282 + | riboflavin synthase subunit beta TERM 2867 3162389 - 3162359 - g 72 -8.8 -4.0492 | opp_overlap 3162365, overlap 3162360 GAAGGGCGACAGAAA GGCCAACCGCCGCG GCG CGGCGCGGCTCGCC GCGGTGCAGGCGCTG nusB 3162288 - 3162812 + | transcription antitermination protein NusB TERM 2868 3162997 - 3162948 - f 85 -14.2 -3.55444 | gap 1, overlap 3162949 TTCTGACTCGCGAAA GGCGCCCCCTCACCCCGACCCTC TCCCC GCAAG-CGGGGCGAGGGAGCGCG CTGCCGATGCCGACA TERM 2869 3162996 - 3162949 - f 86 -17.7 -2.73124 | gap 1, overlap 3162948 TCTGACTCGCGAAAG GCGCCCCCTCACCCCGACCCTC TCCCC GCAAG-CGGGGCGAGGGAGCGC GCTGCCGATGCCGAC TERM 2870 3163191 - 3163224 + G 85 -5.1 -5.00616 | CCGGCGACGATCTGG TGCTGACCACCGACG CCAT CGTCGAGGGTGTGCA TTTTTTGCCCGACGA TERM 2871 3163335 - 3163357 + G 86 -9.1 -4.58283 | gap 1 TCCTTTTGACGCTGG CGCTGCG-CG AGGC CGACGCGGCG TTTTTGGCGCCGTTC TERM 2872 3163649 - 3163706 + G 78 -14.3 -3.53444 | gap 5 CGCTACCGGGTGCCG CGGCCG-CGCTCGGCGCTGGC-TGG-CGCG GTG CGCGACCATGCCAGCG-CG-GCGATGGACG TTTCCGACGGGCTGG TERM 2873 3163773 - 3163814 + G 78 -14.3 -3.55622 | gap 1, overlap 3163774 3163805 TCTCGGCGATCATCG ACGCCGCCGCGATCCCGCTC TCC GAGCCGGGCCG-GGCGGCGC TTTCCGCCGGTTCGG TERM 2874 3163774 - 3163813 + G 85 -17.8 -2.73159 | gap 1, overlap 3163773 3163805 CTCGGCGATCATCGA CGCCGCCGCGATCCCGCTC TCC GAGCCGGGCCG-GGCGGCG CTTTCCGCCGGTTCG RPE_2814 3163073 - 3164044 + | thiamine-monophosphate kinase TERM 2875 3164521 - 3164533 + G 70 -10.5 -3.73775 | overlap 3164512 TCGGCGCGGTGCTGT CCGGC GGC GCCGG TTTCATCGGCATGAA TERM 2876 3164972 - 3165005 + G 73 -10.9 -3.65046 | overlap 3164975 CGAGACCTATGCGGT GACCGCGGTCGCCAC CATG GTGCTGGCCGCGATC TTCTTCGCCTCCACC TERM 2877 3166322 - 3166304 - g 76 -16 -2.83271 | overlap 3166301 3166306 CGACCCCTACAAGGA CACCGCGG GCC CCGCGGTG AACCCGATGATCAAG hppA 3164262 - 3166385 + | membrane-bound proton-translocating pyrophosphatase TERM 2878 3166441 - 3166408 - f 91 -16.8 -3.64822 | opp_overlap 3166414, overlap 3166386 3166414 ATTTTCTGATCGAAA CGAAAACCCCGCGG TGCAAG CCGCGGGGTTTTTG CATGTTACAAGGCCA TERM 2879 3166414 - 3166435 + F 100 -15.1 -4.74706 | opp_overlap 3166408 3166414 TGATCGAAACGAAAA CCCCGCGGT GCAA GCCGCGGGG TTTTTGCATGTTACA TERM 2880 3166435 - 3166414 - f 100 -14.4 -4.56914 | opp_overlap 3166414, overlap 3166408 TGATCGAAACGAAAA CCCCGCGG TGCAAG CCGCGGGG TTTTTGCATGTTACA RPE_2816 3166483 - 3166638 + | hypothetical protein RPE_2817 3166727 - 3167605 + | alpha/beta hydrolase fold TERM 2881 3169172 - 3169152 - g 75 -4.6 -4.69664 | gap 1, overlap 3169153 3169154 GACATTACCGAAAAA CTCG-CCGC CACC GCGGGCGCG CGTTACAATCTCGCC RPE_2818 3167763 - 3170120 + | TonB-dependent receptor RPE_2819 3171532 - 3170138 - | signal transduction histidine kinase, glucose-6-phosphate specific RPE_2820 3171695 - 3172327 + | two component LuxR family transcriptional regulator TERM 2882 3172595 - 3172613 + G 72 -8.2 -4.14243 | overlap 3172599 GATGCTCACTTCTAT CAAACGAT CGA GTCGTTTG TTTTACCATACGCTG TERM 2883 3172599 - 3172609 + G 71 -3.2 -4.67048 | overlap 3172595 CTCACTTCTATCAAA CGAT CGA GTCG TTTGTTTTACCATAC TERM 2884 3173446 - 3173461 + G 73 -6 -4.37092 | opp_overlap 3173429 CGTTCGCGCTGTGGT CGCCGG TGGT CGGGCG TTTTCTCGAAAGCCT RPE_2821 3172581 - 3173483 + | dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein TERM 2885 3173511 - 3173490 - T 74 -12.9 -3.29739 | CTCAAGTGAGAGCAA GCGGCCGGC GGGC GCCGGTCGC ATGGATCAGCGGAAG RPE_2822 3174026 - 3173517 - | SmpA/OmlA domain-containing protein TERM 2886 3174197 - 3174210 + G 73 -3.7 -4.58685 | opp_overlap 3174197 ATGATCGTGGCACAA GCGCG AGAG CCCGC TTTTTACCAGAGTTT RPE_2823 3174110 - 3174661 + | ubiquinol-cytochrome C chaperone TERM 2887 3174840 - 3174783 - g 76 -14.9 -3.16191 | gap 2, opp_overlap 3174793 3174833, overlap 3174773 GGACATCGCCACCAA TGCCGA-GCAGCGCGCCGCCATC-GCC GCGCTG GGCGGACTGCGGAGCGTTGCGTCGGCA ACCGCGTCGTTCGAC RPE_2824 3174685 - 3175269 + | hypothetical protein TERM 2888 3176464 - 3176439 - g 72 -8.3 -4.07568 | gap 1, opp_overlap 3176439 3176455, overlap 3176455 GCGTTGTGGTCAAAA GCCA-CGGCG GAACCAA CGCCGATGGC TTTGCCTATGCCGTC RPE_2825 3175532 - 3176581 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 2889 3177126 - 3177115 - g 77 -5.8 -4.64676 | GGAGGCGCAAGAAAA CTGG GGTA CCAG CGCCGACCATGGCGT TERM 2890 3177269 - 3177294 + G 71 -14.9 -2.52676 | opp_overlap 3177262 TTCAAGCACGCGGTT TCGATGATCAC AGGC GTGATCATCGA TGCCTTCGAAGCCTC RPE_2826 3176594 - 3177571 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2891 3177934 - 3177917 - g 80 -9.1 -4.19238 | opp_overlap 3177917 3177918, overlap 3177918 GCCGCAATCCGAAAA CCGGCAC CGAG GTGCCGA TTTCGCCGCGCCGGG RPE_2827 3177703 - 3178044 + | integration host factor, alpha subunit RPE_2828 3178068 - 3178664 + | MerR family transcriptional regulator TERM 2892 3179205 - 3179255 + G 83 -13.2 -3.88291 | gap 2, overlap 3179248 GTCGCGATCGCCACC GGCGCGGCCTGCGCCGCGTTCGGC CGGCT GCTGGGCGCGGA-CTGGCCG-GCC TTTGTGCCGATGCTG RPE_2829 3178791 - 3179597 + | hypothetical protein RPE_2830 3179606 - 3180076 + | hypothetical protein TERM 2893 3180140 - 3180107 - T 88 -16.9 -3.04715 | gap 1, opp_overlap 3180114 3180136, overlap 3180114 GAGCCGCCCCAAAAC GCAAAAACCGAGCTCC AGG GGAGCTCGGTTCT-GC AATACAGCTCGATGA TERM 2894 3180114 - 3180134 + T 91 -16.9 -3.32963 | opp_overlap 3180107 3180114 CCCAAAACGCAAAAA CCGAGCTCC AGG GGAGCTCGG TTCTGCAATACAGCT TERM 2895 3180134 - 3180114 - T 100 -16.9 -4.87318 | opp_overlap 3180114, overlap 3180107 CCCAAAACGCAAAAA CCGAGCTCC AGG GGAGCTCGG TTCTGCAATACAGCT RPE_2831 3180341 - 3180162 - | antenna complex, alpha/beta subunit RPE_2832 3180496 - 3180356 - | antenna complex, alpha/beta subunit TERM 2896 3181086 - 3181136 + G 77 -6.7 -4.56597 | overlap 3181089 GTGGCGGTCTGCCTT CGCCCCG-GCACCGAGGTCGCCTTC GGC GACGACG-TCGCGGTGCGCGGGTTG TTTTTCCGCAAAACC TERM 2897 3181089 - 3181133 + G 83 -9.2 -4.40561 | overlap 3181086 GCGGTCTGCCTTCGC CCCG-GCACCGAGGTCGCCTTC GGC GACGACG-TCGCGGTGCGCGGG TTGTTTTTCCGCAAA RPE_2833 3180948 - 3181376 + | hypothetical protein TERM 2898 3181594 - 3181558 - f 100 -16.6 -4.56597 | gap 1 TCCGCCGGGCAAAAA CGCCTCCC-GCCGCGCC TCAG GGCGCAACCGGGAAGCG CCGCGGCGGCACGCG RPE_2834 3181683 - 3182057 + | hypothetical protein TERM 2899 3182983 - 3182934 - g 70 -6.4 -4.25104 | gap 3 GGTTTTGCACGAAAA GCCGTC-GCT-ACGCGCCGAT-GAC AAA GTCTAACGGCGCGCCAGCAGGCGTC AGCCCAACCATTATT RPE_2835 3182260 - 3182964 + | Crp/FNR family transcriptional regulator RPE_2836 3183014 - 3183205 + | hypothetical protein RPE_2837 3184159 - 3183221 - | ABC-3 protein RPE_2838 3185364 - 3184156 - | ABC-3 protein RPE_2839 3186210 - 3185380 - | ABC transporter related RPE_2840 3187196 - 3186207 - | periplasmic solute binding protein TERM 2900 3187370 - 3187351 - R 100 -16.4 -4.7254 | overlap 3187338 ACCGCGCAGCAAAAA GCCGCCCG TCAC CGGGCGGC TGTGCCGATCAGACA RPE_2841 3187720 - 3187406 - | hypothetical protein RPE_2842 3189526 - 3187940 - | sugar transferase TERM 2901 3189627 - 3189571 - R 91 -15.6 -3.88601 | overlap 3189572 GAAAAGTCAGAACAA TTGGTTAGCGCGCCGCCCGCGCCGCG GTTAA CGCGGCAAGCGCGGCGCGATAGCCGG CCTCGACGCCGTCGA TERM 2902 3189626 - 3189572 - R 91 -19.1 -2.92076 | overlap 3189571 AAAAGTCAGAACAAT TGGTTAGCGCGCCGCCCGCGCCGCG GTTAA CGCGGCAAGCGCGGCGCGATAGCCG GCCTCGACGCCGTCG RPE_2843 3190738 - 3189575 - | glycosyl transferase, group 1 RPE_2844 3191343 - 3190738 - | polysaccharide export protein TERM 2903 3191628 - 3191606 - g 73 -4 -4.67982 | overlap 3191607 3191619 3191621 GCCGAGCCAAGAAAA TCCGAGCC AAGAACA GGCCCGGG TAGCGGCTCTGCCGC RPE_2845 3191520 - 3193874 + | lipopolysaccharide biosynthesis RPE_2846 3195074 - 3193875 - | hypothetical protein TERM 2904 3194418 - 3194460 + g 84 -9.7 -4.5493 | gap 1, overlap 3194439 CACGATCTCGGCTTC GCTGGCGGCGATGCGCGAGC CGAA GC-CGGGCAGCGCCTGCAGC TTCTTTTCTTTGCCT TERM 2905 3194439 - 3194463 + g 79 -3.6 -4.90778 | gap 2, overlap 3194418 GGCGATGCGCGAGCC GAAGC--CGGGC AGC GCCTGCAGCTTC TTTTCTTTGCCTCGG TERM 2906 3195951 - 3196008 + G 100 -22.7 -4.27316 | gap 1, opp_overlap 3195951 3195952 3195954, overlap 3195952 3195955 CCGCGCAGCGCGAAA TCAGGATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATCTCGC TTTTCCGTTCGGCAC TERM 2907 3196008 - 3195951 - g 90 -18.3 -3.57144 | gap 1, opp_overlap 3195951 3195952 3195955, overlap 3195952 3195954 CCGCGCAGCGCGAAA TCAGGATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATCTCGC TTTTCCGTTCGGCAC TERM 2908 3195952 - 3196007 + G 100 -26.2 -3.16068 | gap 1, opp_overlap 3195952 3195951 3195954, overlap 3195951 3195955 CGCGCAGCGCGAAAT CAGGATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATCTCG CTTTTCCGTTCGGCA TERM 2909 3196007 - 3195952 - g 100 -21.8 -2.74144 | gap 1, opp_overlap 3195951 3195952 3195955, overlap 3195951 3195954 CGCGCAGCGCGAAAT CAGGATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATCTCG CTTTTCCGTTCGGCA TERM 2910 3196005 - 3195954 - g 100 -20.8 -2.91695 | gap 1, opp_overlap 3195952 3195951 3195955, overlap 3195952 3195951 CGCAGCGCGAAATCA GGATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATCT CGCTTTTCCGTTCGG TERM 2911 3195955 - 3196004 + G 100 -28.7 -2.77861 | gap 1, opp_overlap 3195954 3195952 3195951, overlap 3195952 3195951 GCAGCGCGAAATCAG GATGGGGCGCGCCGTGGCCGAAGC CGC GCT-CGGCCGCGGCGTGCCGCATC TCGCTTTTCCGTTCG RPE_2847 3195200 - 3196204 + | polysaccharide deacetylase RPE_2848 3196420 - 3196211 - | hypothetical protein RPE_2849 3196514 - 3197602 + | cytochrome oxidase assembly RPE_2850 3197966 - 3197610 - | hypothetical protein RPE_2851 3198406 - 3197969 - | camphor resistance CrcB protein RPE_2852 3198804 - 3198403 - | CrcB protein RPE_2853 3200107 - 3198827 - | O-acetylhomoserine aminocarboxypropyltransferase TERM 2912 3199814 - 3199777 - G 71 -14.1 -2.87931 | opp_overlap 3199781, overlap 3199796 3199813 TCGAGCCGCCATAGA GTTTTCGCGCGGCGATG AATT CGTCGCCGGGCGAAAGC AGCTGCTGGAACACG RPE_2854 3200798 - 3200214 - | CoA-binding domain-containing protein TERM 2913 3200847 - 3200892 + r 90 -17.7 -3.06183 | gap 1, opp_overlap 3200847 3200852 3200856, overlap 3200852 3200856 GTCATTGCGAGCGAA GCGAAGCAATCCAGGGGCCACG GTG CTCGGCTC-TGGATTGCTTCGC TTCGCTCGCAATGAC TERM 2914 3200892 - 3200847 - R 90 -17.7 -3.06183 | gap 1, opp_overlap 3200847 3200852 3200856, overlap 3200852 3200856 GTCATTGCGAGCGAA GCGAAGCAATCCAGGGGCCACG GTG CTCGGCTC-TGGATTGCTTCGC TTCGCTCGCAATGAC RPE_2855 3201768 - 3200944 - | enoyl-CoA hydratase RPE_2856 3201856 - 3202287 + | hypothetical protein rplM 3202444 - 3202908 + | 50S ribosomal protein L13 TERM 2915 3203195 - 3203226 + G 72 -12.9 -3.14683 | GATCTGCACCGTCGC CGGCGGCGGCCTG TCCGGC CAGGCCGGCGCGG TTCGTCACGGCATCT rpsI 3202908 - 3203384 + | 30S ribosomal protein S9 TERM 2916 3203407 - 3203425 + F 84 -17.4 -2.82623 | overlap 3203404 CGATCCGTCGCTTTC GCCCCGCG GGT CGCGGGGC TCGTTCTCGAGAGGG TERM 2917 3203436 - 3203457 + F 100 -17.3 -5.46129 | GGGGCTCGTTCTCGA GAGGGCGCC TTCG GGCGCCCTC TTTTTTGGTTTGTTG RPE_2859 3203599 - 3204855 + | diguanylate cyclase TERM 2918 3205173 - 3205190 + G 75 -4.8 -4.62069 | gap 1, overlap 3205176 AGTTTTGCCGAATGG CGCGGCC TGGTC GGCC-CG TTTTTCGCGTCCCCG RPE_2860 3204948 - 3205250 + | antibiotic biosynthesis monooxygenase RPE_2861 3206380 - 3205247 - | hypothetical protein TERM 2919 3206661 - 3206629 - H 72 -13.4 -2.73875 | opp_overlap 3206624 3206621, overlap 3206626 TGGGCCGCAACAGCA GCGGGTGGAAGTCC TGGGT GGGCTTCCAGCCGC CGAAATGGTATTTGG RPE_2862 3206683 - 3207615 + | rare lipoprotein A RPE_2863 3208583 - 3207636 - | alpha/beta hydrolase fold RPE_2864 3208739 - 3209995 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 2920 3210161 - 3210131 - g 81 -5.3 -4.82901 | gap 1, overlap 3210132 3210134 GGCTGCGCACAAAAA TCACC-CGCGAGCC TGGC GGCTCGCCCGGCGC CGAGATCATCCGGCA TERM 2921 3210493 - 3210449 - g 77 -13.4 -3.53091 | gap 1 ACGTCCCGGTGGAAA CCGGCGTGCGCCGCGCCGCGG TGCG CCGTGGCGATGC-CACGCCCG ACCGCTTCGAGGCCG RPE_2865 3209998 - 3210687 + | thymidylate kinase TERM 2922 3210803 - 3210777 - g 79 -4.9 -4.74801 | overlap 3210779 GAAGCCGAGCAAAAA CTGCTCGACGC CTATC GCGGCGGGCGG ATCGCGCATGCCTGG TERM 2923 3211294 - 3211251 - g 81 -16.6 -3.09516 | gap 1 CTGGCGACCATCCAA TCGCGCTGCCGGCGGCTGCCG CTG CGGCCGCTGCCGACCGC-CGA GGTGATCGCCGCCGC TERM 2924 3211382 - 3211422 + G 76 -15.4 -2.87132 | gap 2 CTCCGAGGGCAGCGT GGCGCGGGCGCTGACGCTGC TCG GCGGCGAC-GCGCTCG-GCC TCTATCAGCGCACCA RPE_2866 3210684 - 3211730 + | DNA polymerase III subunit delta' TERM 2925 3211708 - 3211738 + F 70 -7.4 -4.07568 | opp_overlap 3211723, overlap 3211709 TTTCGGTGTTCGGGC TGCTCGCGGAAGCG ATC CGCTGACGCGACCG TTTTCGGCAGCGGGC TERM 2926 3213309 - 3213324 + G 70 -11.8 -3.36073 | overlap 3213307 3213298 CCGGGCACGCAGATG CCGGCG CCCG CGCCGG TGTTTCCGCGCTATG RPE_2867 3211803 - 3213359 + | methionyl-tRNA synthetase RPE_2868 3213368 - 3214156 + | TatD family hydrolase TERM 2927 3214279 - 3214251 - g 79 -7.2 -4.70626 | opp_overlap 3214255 GAACAATCCGAAAAA CCGCCGGCTGCG CTGTT CGCTGATGGCGG AGCGGACGTCGTCCG RPE_2869 3214153 - 3214950 + | putative hydrolase RPE_2870 3215962 - 3215099 - | LysR family transcriptional regulator TERM 2928 3216588 - 3216610 + G 70 -9.9 -3.65522 | gap 1, opp_overlap 3216593 CGCCGATCGAGAACG CGAAAGGGGC AGGA GCCCC-TTCG TTATTCCCGTCGGTG RPE_2871 3216145 - 3217152 + | D-cysteine desulfhydrase family protein TERM 2929 3217282 - 3217312 + G 77 -5.2 -4.68593 | TGACTTCTACATCTA CGGGGCGCTGGCGG CGT TCTTCGGCGCACTG TTTTTCCCTCCTGGC TERM 2930 3217728 - 3217759 + G 84 -13.8 -4.02334 | AGTCCATGAGTGCGT CGGAATTCGCAAGT TGGG GCTGGCGAATTCCG TTTCTCGTCTCCGTC RPE_2872 3217166 - 3218764 + | major facilitator transporter RPE_2873 3218825 - 3219391 + | glyoxalase/bleomycin resistance protein/dioxygenase RPE_2874 3221117 - 3219468 - | acyl-CoA synthetase RPE_2875 3223092 - 3221206 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 2931 3221567 - 3221531 - G 100 -12.2 -5.04385 | gap 1, overlap 3221506 3221507 GACACCGCCAAAAAA CTGGCGGCGCCGCCGGG GAGC CCCGTCATCGCCGC-AG CCAGTTCGCGCGAAA TERM 2932 3221615 - 3221585 - G 70 -3.8 -4.56775 | overlap 3221586 3221587 3221610 AGTTCGCGCGAAAAA CCGGATTGGGTCAG GCC CCAAGCCATGCCGG TGGCGGTGCCGATGA TERM 2933 3222806 - 3222766 - G 91 -16.7 -3.88291 | opp_overlap 3222799, overlap 3222730 3222767 GACCACGTCGAGAAA CGCCCGCGTCGACGGCGCG GCG CGCGCCACCAGCGCGGTCA TCCGCATGTGCTCGC TERM 2934 3222805 - 3222767 - G 86 -18 -2.92653 | opp_overlap 3222799, overlap 3222730 3222766 ACCACGTCGAGAAAC GCCCGCGTCGACGGCGCG GCG CGCGCCACCAGCGCGGTC ATCCGCATGTGCTCG RPE_2876 3224121 - 3223102 - | TRAP dicarboxylate transporter, DctP subunit TERM 2935 3224278 - 3224245 - R 71 -9.5 -3.72576 | gap 1, opp_overlap 3224247 3224266, overlap 3224247 GCGGCTTCGACCAAA GACCGCGCCACGGCAA CGG CCGCCGCGACGCAG-C ATTTTTCGGCGCGGC TERM 2936 3224277 - 3224247 - R 76 -13.2 -3.44848 | opp_overlap 3224247 3224266, overlap 3224245 GGCTTCGACCAAAGA CCGCGCCACGGCAA CGG CCGCCGCGACGCAG CATTTTTCGGCGCGG RPE_2877 3225877 - 3224660 - | sulfatase TERM 2937 3224808 - 3224796 - G 70 -2.6 -4.59109 | opp_overlap 3224800 3224801 GAGAGGTCCCAAAAA CGCG TCGGC CGCA TCAGCCGGTTGTGCG TERM 2938 3226533 - 3226549 + G 75 -2.9 -4.72846 | overlap 3226536 CCTTAGCGAGCTGGC GAGCGAA GCC TTCGTGC TTTTTCCCTATGTGC RPE_2878 3225964 - 3226857 + | LysR family transcriptional regulator TERM 2939 3226918 - 3226905 - T 76 -9.5 -4.08216 | GTAGGGTGGGCAAAA GGCGC CTTG GCGCC GTGCCCACGCGCTAC RPE_2879 3228771 - 3227089 - | methyl-accepting chemotaxis sensory transducer TERM 2940 3227520 - 3227495 - G 72 -8.9 -4.15565 | gap 1, overlap 3227496 GCTACCACGGCAAAA CCGCG-GCCGGC TTC GCCAGCGCGCGC CGCCTCGATGGTGGC TERM 2941 3228455 - 3228477 + g 70 -6.2 -4.29106 | opp_overlap 3228431, overlap 3228457 AGCTTGCGCTCCTCC GGCGAGCTGA TCA TCGGCTCGTA TTTCTTGATCTGACC TERM 2942 3228457 - 3228475 + g 73 -11 -3.7456 | opp_overlap 3228431, overlap 3228455 CTTGCGCTCCTCCGG CGAGCTGA TCA TCGGCTCG TATTTCTTGATCTGA TERM 2943 3229025 - 3229004 - R 78 -11.6 -3.76224 | opp_overlap 3228995 3229019 3229022 TTTTGATGCACGAAA GTCGTCCG TACTAT CGGACGAC AAGGCCAAGGCCCTT RPE_2880 3230881 - 3229148 - | methyl-accepting chemotaxis sensory transducer TERM 2944 3232435 - 3232414 - g 73 -12.3 -3.48276 | gap 1, opp_overlap 3232414 3232415, overlap 3232415 GCGCTTCGCACAGAA CCCGCGCGAC CGC GTCGCG-GGG TTTCGCGTGCTGCAG TERM 2945 3232415 - 3232435 + G 74 -12.5 -3.62096 | opp_overlap 3232414 3232415, overlap 3232414 CGCTTCGCACAGAAC CCGCGCGAC CGC GTCGCGGGG TTTCGCGTGCTGCAG RPE_2881 3231107 - 3233209 + | UvrD/REP helicase TERM 2946 3233328 - 3233342 + G 89 -8.5 -5.00616 | CTGCGGTTGTATCGG CCGCG GCAGG CGCGG TTTTTTACGGCGCGC RPE_2882 3233252 - 3233512 + | hypothetical protein RPE_2883 3233854 - 3233537 - | hypothetical protein RPE_2884 3234611 - 3233883 - | ExsB family transcriptional regulator mazG 3234724 - 3235548 + | nucleoside triphosphate pyrophosphohydrolase RPE_2886 3235666 - 3236988 + | hypothetical protein TERM 2947 3237028 - 3237071 + G 73 -3.6 -4.59853 | gap 1, overlap 3237031 3237065 CGGACGCCAAGGCGC GCGCGCTGACCGCGGTCCGCG CGC TGCACACCGCGATCTGGG-GC TTTTTCGCCAGTTCG RPE_2887 3236985 - 3237350 + | hypothetical protein TERM 2948 3237400 - 3237370 - T 79 -15.4 -2.90496 | opp_overlap 3237373, overlap 3237367 3237372 GGCGGCCTGAAACGA CAGCGGCCATCCCG AAC CGGGATGGCCATCG ATTGCGCCCGATCGA TERM 2949 3237398 - 3237372 - T 78 -14.4 -3.00525 | opp_overlap 3237373, overlap 3237370 3237367 CGGCCTGAAACGACA GCGGCCATCCCG AAC CGGGATGGCCAT CGATTGCGCCCGATC TERM 2950 3237373 - 3237397 + T 76 -15.7 -2.52543 | opp_overlap 3237372 3237370 3237367 GGCCTGAAACGACAG CGGCCATCCCG AAC CGGGATGGCCA TCGATTGCGCCCGAT TERM 2951 3237412 - 3237435 + T 73 -8.8 -4.07687 | gap 1 ATCGATTGCGCCCGA TCGACCGCGCG AAA CGCGCGG-CAA TTTTCAGAACGGAAT RPE_2888 3237939 - 3237439 - | single-strand DNA-binding protein TERM 2952 3237983 - 3238024 + H 72 -4.3 -4.62069 | gap 2, opp_overlap 3237979, overlap 3237987 CTGTCTAAAACGCTT GAT-ACGCCCGC-CCGGGC GTTTCG GCCCGGCGCGCGCGGCACC TTTTTGCGGTCCCGC TERM 2953 3238147 - 3238159 + H 83 -7.7 -4.56597 | opp_overlap 3238147, overlap 3238135 TTGTTCCCAATGAAA GGGAA ATC TTCCC TTTTTACAACCGGAA RPE_2889 3238392 - 3239135 + | putative outer membrane protein TERM 2954 3239192 - 3239174 - f 81 -13.1 -3.73072 | opp_overlap 3239174 AATCGTCTGACGAAA GGCCGGC CTCGC GCCGGCC TTTTTGCTGTCCAAA TERM 2955 3239174 - 3239192 + F 100 -13.1 -4.8048 | opp_overlap 3239174 AATCGTCTGACGAAA GGCCGGC CTCGC GCCGGCC TTTTTGCTGTCCAAA TERM 2956 3239718 - 3239704 - g 71 -3.4 -4.60889 | overlap 3239705 AACCACCTCGAAAAA TCCGCG CTC CACGGT CGGCACCGTCACCGA TERM 2957 3240060 - 3240084 + G 72 -8.5 -4.07687 | overlap 3240061 TCGTGGTGCGCCCCG ATATCGGCCAG CGC CTGGCCGAGAG TTTTGAGACCGCGCT TERM 2958 3240490 - 3240475 - g 76 -6 -4.56775 | overlap 3240476 ACTGTCGCTGAAAAA GGGCGC GATC GCGCCG TGGGCGAAGTCGTCG uvrA 3239381 - 3242446 + | excinuclease ABC subunit A TERM 2959 3243048 - 3243085 + T 71 -13.3 -3.06162 | opp_overlap 3243063 3243064 CTTTCAAGATAGTTG TGGCGCCACGAGGAAGC CGAA GCCGCCTCGTGGCGCGG TGTTACGCTAAAGTG RPE_2891 3243672 - 3243376 - | hypothetical protein TERM 2960 3243745 - 3243775 + H 71 -4.7 -4.45945 | gap 1, overlap 3243735 3243746 ACGGTCGAGCGAGTA G-GATGGGTTGAGC ACTT GCGAAACCCATCTC TTTTCGTTCGTGGGT TERM 2961 3243746 - 3243773 + H 71 -8.4 -3.83437 | overlap 3243745 3243735 CGGTCGAGCGAGTAG GATGGGTTGAGC ACTT GCGAAACCCATC TCTTTTCGTTCGTGG TERM 2962 3244093 - 3244066 - g 70 -9.8 -3.62591 | gap 1, overlap 3244067 TCCATAAGCTCGAAA CCGCCCGCGATGC GCT GCGTCGC-GGCGA CCTGGCGGAAGCGGT RPE_2892 3243939 - 3244154 + | hypothetical protein TERM 2963 3244515 - 3244530 + G 79 -3.2 -5.07652 | overlap 3244516 TTCCTTCGCAATTTC CGTCCT AGCA AGGACC TTTTGTTTTGGAGAA RPE_2893 3244269 - 3244766 + | hypothetical protein RPE_2894 3245014 - 3245520 + | hypothetical protein TERM 2964 3245539 - 3245592 + F 91 -21.1 -2.63596 | gap 1, overlap 3245530 3245529 GCGTAGCCCGTATGA GCGCAGCGACATGCGGGGTT-TGGCG GCG CGACGCGATCCCGCATATCGCTGCGC TCATGTGGGCTACCG RPE_2895 3245917 - 3246669 + | putative outer-membrane protein precursor TERM 2965 3246753 - 3246797 + F 70 -9.9 -3.66874 | opp_overlap 3246748 3246787 GCGAAACCCATCTCT TGTCCCTCGCGTGGGTTTGGC TGC GCCCAACCCACGCGACCCAGA TTTGAATCGCCTTCG RPE_2896 3246839 - 3247195 + | hypothetical protein TERM 2966 3247282 - 3247240 - f 76 -9.3 -4.07687 | overlap 3247254 ACTCGGTTCTGAAAA TTTTGCGAAGAGAAGCG CGCACTTTT CACCTCTCCCCGCAAAA GAGCGTGGAGAGGTG TERM 2967 3247309 - 3247254 - f 100 -16.9 -3.65991 | overlap 3247240 3247304 3247305 3247306 ATTTTGCGAAGAGAA GCGCGCACTTTTCACCTCTCCCCGC AAAAGA GCGTGGAGAGGTGAAAAAACCCCGC GCCGGTCTTGGCGGG TERM 2968 3247325 - 3247304 - f 77 -2.2 -5.07567 | overlap 3247254 3247305 3247306 GGAGAGGTGAAAAAA CCCCGC GCCGGTCTTG GCGGGA TGCGCGCCGCTCTCA TERM 2969 3247873 - 3247847 - f 95 -10.7 -4.64766 | opp_overlap 3247845 3247849, overlap 3247830 3247827 3247848 GGGAGAGGTGAAAAA CCCCGCGCCGG TCATT CCGGGGCGGGC GCCGTTTCTTCACCT TERM 2970 3247872 - 3247848 - f 82 -14.2 -3.38378 | opp_overlap 3247845 3247849, overlap 3247830 3247827 3247847 GGAGAGGTGAAAAAC CCCGCGCCGG TCATT CCGGGGCGGG CGCCGTTTCTTCACC TERM 2971 3248726 - 3248698 - f 70 -11.7 -3.14344 | opp_overlap 3248723 GACCGTGGTGACTAA CTCGTGTGCTTTG TTT CACTGCACACGAG GCCGCGGGTGCATCG TERM 2972 3248821 - 3248796 - f 73 -12.5 -3.15579 | gap 1, overlap 3248798 GGAACGTTTTAGCAA GACCCG-GGCGC AAC GCGCCGCGGGAC CGGGACGGCATGTGT TERM 2973 3248819 - 3248798 - f 76 -13.7 -3.13899 | gap 1, overlap 3248796 AACGTTTTAGCAAGA CCCG-GGCGC AAC GCGCCGCGGG ACCGGGACGGCATGT TERM 2974 3249252 - 3249269 + G 83 -8.3 -4.60487 | overlap 3249244 TTTCTGGCGCCGCTG GCCGGCG AAGG CGGCGGC TTTTTGCGCATCCTG RPE_2897 3248955 - 3249731 + | Ion transport 2 domain-containing protein RPE_2898 3249930 - 3249802 - | hypothetical protein TERM 2975 3250469 - 3250445 - g 70 -9.9 -3.71873 | TCACCCACACCGAAA CCCCGGCCG ATTTGCG CGGCCGCGG CATCGCCTCGCGCCT TERM 2976 3250508 - 3250545 + G 84 -13.4 -3.9712 | gap 1, opp_overlap 3250508 3250528, overlap 3250509 GCGCGCTGGAATTGA TCCGC-GCCGACGGCCA AAAAC TGGTCGCCGGCTGCGGG TTTGTGGTGGACTAC TERM 2977 3250509 - 3250544 + G 74 -14.7 -2.97951 | gap 1, opp_overlap 3250508 3250528, overlap 3250508 CGCGCTGGAATTGAT CCGC-GCCGACGGCCA AAAAC TGGTCGCCGGCTGCGG GTTTGTGGTGGACTA TERM 2978 3250538 - 3250528 - g 70 -2.4 -4.59773 | opp_overlap 3250509 3250508, overlap 3250508 GCCGACGGCCAAAAA CTGG TCG CCGG CTGCGGGTTTGTGGT RPE_2899 3250324 - 3250599 + | hypothetical protein TERM 2979 3250632 - 3250652 + T 95 -15.4 -4.1021 | opp_overlap 3250626 3250625 TCGACAAAGTGGCAA GGCCCGCG ACGCG CGCGGGCC TTTGTCGTTATGCCC RPE_2900 3251073 - 3250678 - | hypothetical protein RPE_2901 3251382 - 3252296 + | hypothetical protein TERM 2980 3252310 - 3252342 + F 78 -15.7 -2.70932 | gap 1 AATCGGTGACCCGCA TGCCAGGCC-CCGA CCGTTT TCGGCGGCCTGGCA TCATTGCGACGGCAG RPE_2902 3252716 - 3252868 + | hypothetical protein TERM 2981 3252932 - 3252877 - f 72 -8 -4.13767 | opp_overlap 3252889, overlap 3252879 3252880 CGGCTGATCCCAAAA CACTTCCTGGTTCGACCACGCCCGCC GCTC GGCGGGCGTTGTCGTTTCTGGAACCT TCGCGCGGCGTTTCA TERM 2982 3252930 - 3252879 - f 77 -12.8 -3.6692 | opp_overlap 3252889, overlap 3252877 3252880 GCTGATCCCAAAACA CTTCCTGGTTCGACCACGCCCGCC GCTC GGCGGGCGTTGTCGTTTCTGGAAC CTTCGCGCGGCGTTT TERM 2983 3252929 - 3252880 - f 81 -16.3 -2.79831 | opp_overlap 3252889, overlap 3252879 3252877 CTGATCCCAAAACAC TTCCTGGTTCGACCACGCCCGCC GCTC GGCGGGCGTTGTCGTTTCTGGAA CCTTCGCGCGGCGTT TERM 2984 3252889 - 3252920 + F 100 -21.6 -3.87869 | opp_overlap 3252880 3252879 3252877 AAACACTTCCTGGTT CGACCACGCCCGCC GCTC GGCGGGCGTTGTCG TTTCTGGAACCTTCG RPE_2903 3252978 - 3254408 + | tRNA (uracil-5-)-methyltransferase Gid RPE_2904 3255292 - 3254429 - | phytoene synthase RPE_2905 3255689 - 3255303 - | hypothetical protein secF 3256693 - 3255689 - | preprotein translocase subunit SecF secD 3258311 - 3256710 - | preprotein translocase subunit SecD TERM 2985 3258358 - 3258339 - R 70 -10.6 -3.59109 | opp_overlap 3258339 3258336 3258335, overlap 3258340 TCAGAGAGCAGAGAA GCCGGCGC GCAG GCGCCGGG TGCGTTTACTTGGTG TERM 2986 3258357 - 3258340 - R 72 -14.1 -2.74983 | opp_overlap 3258339 3258336 3258335, overlap 3258339 CAGAGAGCAGAGAAG CCGGCGC GCAG GCGCCGG GTGCGTTTACTTGGT RPE_2908 3258801 - 3258364 - | preprotein translocase, YajC subunit RPE_2909 3258952 - 3259944 + | hypothetical protein TERM 2987 3260071 - 3260032 - T 91 -18.6 -3.01912 | gap 1 TGAGACTCACAGAGA TTCCGGGTTCGCGCGCAGC TTA GCTGCGCCCGC-CCCGGAA TGACTCGGGCGAGAT RPE_2910 3261004 - 3260099 - | pyruvate carboxyltransferase TERM 2988 3260941 - 3260916 - G 93 -11.1 -4.37092 | opp_overlap 3260915 3260914 3260939 AGCGCCTCGACAAAA CCGATCCGCGC TTGA ACGCTGATCGG GGTCTTCTCGTTCTG RPE_2911 3263052 - 3261043 - | carbamoyl-phosphate synthase L chain, ATP-binding protein TERM 2989 3262447 - 3262458 + g 75 -7.2 -4.41895 | overlap 3262437 3262445 CAGCATGCGATCGTC GCCG AACG CGGC TTTTGCTTCGCGCTT TERM 2990 3262531 - 3262551 + g 78 -13.9 -3.53012 | opp_overlap 3262499 GATCCGCATGCCGCG GCCGCCGCC GCC GGCGGAGGC TTTCACCAGCACCGG TERM 2991 3263091 - 3263073 - R 70 -10.2 -3.66803 | CCTGAACAGGCCAAA GCGGGTCG GCT CGACCGGC GCGTTCGCCGAAGCC RPE_2912 3264656 - 3263052 - | propionyl-CoA carboxylase TERM 2992 3263445 - 3263502 + g 74 -14.7 -2.94561 | gap 1, overlap 3263466 3263468 GGTGAACTTTGGCAC GG-CGGCGGTGGCGACCGCGGTGACG AGCTTGG CGCCGTCGCGGGCGATGCCGCCGGCC TCGTATTTCTTGCCG TERM 2993 3263466 - 3263507 + g 75 -9.3 -4.15222 | overlap 3263445 3263468 GGTGGCGACCGCGGT GACGAGCTTGGCGCCGTCG CGGG CGATGCCGCCGGCCTCGTA TTTCTTGCCGACCAT TERM 2994 3263468 - 3263505 + g 75 -11.9 -3.6761 | overlap 3263445 3263466 TGGCGACCGCGGTGA CGAGCTTGGCGCCGTCG CGGG CGATGCCGCCGGCCTCG TATTTCTTGCCGACC TERM 2995 3263564 - 3263547 - G 72 -4.8 -4.57073 | overlap 3263527 3263526 3263549 GATGTTCTGCAAAAA CACCAG CGGGAT CTGGCG CTGGCAGCACAGCTC RPE_2913 3265137 - 3264802 - | ETC complex I subunit region TERM 2996 3266253 - 3266276 + G 70 -6.6 -4.20531 | opp_overlap 3266254, overlap 3266255 CGCCCGCTGATCAAA TGCGGCCAGC AGTC GCTGGCGGTG TTTTGCGTCGGTGTA RPE_2914 3265317 - 3266570 + | putative OpgC protein TERM 2997 3266633 - 3266606 - T 95 -15.6 -4.05788 | CTTTGCCAAACCAAA GGGCCATCCCAC AGCA GCGGAATGGCCC TTGAAGATGGCAGCG TERM 2998 3266671 - 3266641 - T 78 -14.6 -3.02043 | AATGGCCCTTGAAGA TGGCAGCGGCGACG GCG CACCGCCGCCGCCC GGCAAGATCCGGATT tnaA 3268133 - 3266685 - | tryptophanase TERM 2999 3267491 - 3267519 + g 82 -11.7 -4.07568 | GGGGAACGCTGTTCT CCTTGCAGACGTT GCT GACGTCGGCGAGG TTTTGCAGCGAAAAC TERM 3000 3267546 - 3267534 - G 70 -6.2 -4.18018 | GTTTTGCAGCGAAAA CGGC TGACC GCCG ATCAGATTGGTGCCG RPE_2916 3270181 - 3268445 - | hypothetical protein RPE_2917 3271193 - 3270741 - | hypothetical protein RPE_2918 3272080 - 3271421 - | cold-shock DNA-binding domain-containing protein RPE_2919 3273047 - 3272286 - | silent information regulator protein Sir2 TERM 3001 3273249 - 3273276 + H 76 -7.7 -4.25104 | opp_overlap 3273249 GGTGTTCGACCAGAA GAGCCCCGT GCCCTCCAAG GCGGGGCTC TTTTCGTGCCGGACG RPE_2920 3273353 - 3273802 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3002 3273966 - 3273985 + T 100 -13.6 -4.8622 | opp_overlap 3273966 TGGCGCATTCTCAAA GGCATCGC TTCG GCGATGCC TTTTTGCTTGGCGCG TERM 3003 3273985 - 3273966 - T 81 -13.6 -3.57144 | opp_overlap 3273966 TGGCGCATTCTCAAA GGCATCGC TTCG GCGATGCC TTTTTGCTTGGCGCG RPE_2921 3274273 - 3274013 - | hypothetical protein TERM 3004 3274475 - 3274463 - H 71 -5.5 -4.28548 | overlap 3274450 AGCGACGGATCAAAA CGTCG AAT CAACG TAAGCCTTTGCCTGT TERM 3005 3274536 - 3274582 + H 89 -10.9 -4.31379 | gap 1 GCGACCAGCAAACGC CGTCAGCCTGGA-GAGTTCAAG CTCG CTTGAATGCATCCTGGCGGACG TTTTGCTCCCTTCGT TERM 3006 3275103 - 3275072 - g 75 -14.4 -3.24747 | gap 1 TGTCCATACGATCAA CAGCGCGACCGAACC CGC GGTGCGG-CGCGCCG CAATCCGCATGCATG RPE_2922 3274929 - 3275198 + | hypothetical protein TERM 3007 3275212 - 3275239 + T 83 -9 -4.28774 | overlap 3275214 AGGGACCGATCCTCA CCGTCAGCCCGG CTTC CCGGGGTGGCTG TTTTCGGTTGGCTCG TERM 3008 3275214 - 3275237 + T 74 -10.2 -3.74381 | overlap 3275212 GGACCGATCCTCACC GTCAGCCCGG CTTC CCGGGGTGGC TGTTTTCGGTTGGCT RPE_2923 3275697 - 3275434 - | hypothetical protein TERM 3009 3275959 - 3275942 - H 71 -9.1 -3.78775 | gap 1, opp_overlap 3275941, overlap 3275944 CCGTTGACGATGAAA CACGGCGC GCG GCGCCG-G CGATCTCTAACATGC TERM 3010 3275958 - 3275944 - H 76 -12.8 -3.48024 | opp_overlap 3275941, overlap 3275942 GTTGACGATGAAACA CGGCGC GCG GCGCCG GCGATCTCTAACATG RPE_2924 3276041 - 3276511 + | hypothetical protein RPE_2925 3277142 - 3276903 - | hypothetical protein RPE_2926 3277382 - 3277954 + | hypothetical protein RPE_2927 3278234 - 3277977 - | hypothetical protein RPE_2928 3279556 - 3278471 - | hypothetical protein RPE_2929 3280605 - 3279553 - | tRNA synthetase, class II (D, K and N) RPE_2930 3280744 - 3281310 + | elongation factor P TERM 3011 3281678 - 3281639 - g 72 -11.4 -3.58343 | gap 1, overlap 3281640 3281661 GCCATCACCTCGAAA GTCTTCACCGGAATAGGGC AAA GCCCGATTCCGGTGCTG-C TGCCGTTCGACACCG TERM 3012 3282658 - 3282629 - g 76 -8.5 -4.1822 | gap 1, opp_overlap 3282631 3282632 3282634, overlap 3282631 TGCGATCCGAACAAA TACGCCGTCCTCGC GGT GCGCG-ACGGCGTG CTGTTGCGTTCGGCG TERM 3013 3282656 - 3282631 - g 73 -11.1 -3.69068 | gap 1, opp_overlap 3282631 3282632 3282634, overlap 3282629 CGATCCGAACAAATA CGCCGTCCTCGC GGT GCGCG-ACGGCG TGCTGTTGCGTTCGG TERM 3014 3282694 - 3282680 - g 79 -2.1 -5.00616 | gap 1, opp_overlap 3282684, overlap 3282682 CGTTCGGCGAAAAAA CAGGCG GCGA CGC-TG ATTGTCAACAGCCGC RPE_2931 3281342 - 3283060 + | peptidase M23B TERM 3015 3283187 - 3283217 + G 70 -11 -3.55444 | overlap 3283216 CGCCGCCTCACTGCT GCCGGCCGCGGC CCTCGCC GCCCCGCCCGGC TTTGAGCAGTGGCGC RPE_2932 3283119 - 3284330 + | lytic murein transglycosylase TERM 3016 3284610 - 3284632 + G 70 -4 -4.44448 | overlap 3284612 GGCATGATCGCCTGC TACGCGTTCG GGC TGATCGCGCA TTTCTTTCCGCTGCT TERM 3017 3285176 - 3285221 + G 71 -9.1 -3.86015 | gap 1, opp_overlap 3285188 3285189, overlap 3285189 GATCGCGCTCTCTTT CATCATCGAGAACGCCGTGGTG CGG CACTACGGC-TTTGCGGTGATC TTTATCACCCCGCTG TERM 3018 3285189 - 3285209 + G 79 -13.3 -3.64184 | opp_overlap 3285188 3285189, overlap 3285176 TTCATCATCGAGAAC GCCGTGGTG CGG CACTACGGC TTTGCGGTGATCTTT RPE_2933 3284337 - 3285437 + | hypothetical protein RPE_2934 3287275 - 3285434 - | single-stranded-DNA-specific exonuclease RecJ TERM 3019 3285902 - 3285928 + g 83 -15.8 -3.53012 | TTTGCGCAGCGTGAC GCCGGCGGCCAT CGC GTGGCCGCCGCC TTTCACCAGCACGCC TERM 3020 3286112 - 3286136 + g 70 -9.9 -3.65812 | opp_overlap 3286090, overlap 3286113 GGGATGCCAGCCTTC CGACGCGGTGA CGA TCACCGCGCCC TTGTCTTCCAGCCCC RPE_2935 3288120 - 3287392 - | haloacid dehalogenase, type II glpX 3289153 - 3288155 - | fructose 1,6-bisphosphatase II TERM 3021 3288886 - 3288905 + g 75 -9.2 -4.09685 | CGATATCGACTTGCG GGCCGGCA TTGA TGCCGACC TTTTCGCCGATGAAC TERM 3022 3289194 - 3289173 - R 78 -2.9 -5.03145 | gap 1, overlap 3289177 CAACTCCTCAAAAAA TCTAG-CGCG TCC CGCGTCCGGA ATGAACGTGGGCAGC RPE_2937 3290533 - 3289214 - | homoserine dehydrogenase TERM 3023 3289580 - 3289553 - G 70 -13.4 -3.05596 | gap 1, opp_overlap 3289569 GATCGGCCGACCGAA CGGCAGCGCGCGG ATG CCGCGCGCCAC-G TCGGCGATATCGGCG TERM 3024 3290132 - 3290164 + g 75 -4.8 -4.58283 | gap 2, opp_overlap 3290149 3290152 CGGGATCGCCGCGCA CACCGCGGC-CTC-GA AAT TCAGCGCGCCGCCGTG TTTTTCGGCGAGTTC RPE_2938 3291855 - 3290635 - | aminotransferase TERM 3025 3290783 - 3290762 - G 77 -7.9 -4.38712 | GCGATGCGGACAAAA CCCTCGCCG TGCT CGCCGAAGG CCACGCCGGGCGACA RPE_2939 3292451 - 3292038 - | hypothetical protein TERM 3026 3292314 - 3292344 + g 78 -15.3 -3.21395 | opp_overlap 3292305, overlap 3292312 CAGCAACGCGACGAC CGTCGCCGCGCGG GTGAA CCGCGCGCCGCCG TATTGTCCGGGCAAT RPE_2940 3292637 - 3294439 + | Poly(R)-hydroxyalkanoic acid synthase, class I TERM 3027 3296772 - 3296758 - g 77 -7 -4.49556 | overlap 3296759 GCTGCAGCAAAGAAA GCCGGC GAT GGCGGC GCTGAAAGCGCTGCG RPE_2941 3294719 - 3297127 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) RPE_2942 3297509 - 3297147 - | hypothetical protein TERM 3028 3297332 - 3297295 - G 72 -6.8 -4.16842 | gap 1, overlap 3297278 GCGATGCCGAACAAA GCCGCCGCCGCCACGCC GAATT GGC-CGGCCGCTTCGGC ATTGCCGGAGGGCGT RPE_2943 3298255 - 3297647 - | methyltransferase type 12 RPE_2944 3299261 - 3298266 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 3029 3298464 - 3298511 + g 86 -17.6 -3.14132 | gap 1 GCCGCTGGCGATCGT CGCGCCGTCGCGCGGCGCCACCG AGA CCGTGGCGCTGC-CGGCGTAGCG TTGGTCCAGCACCGC RPE_2945 3299877 - 3299347 - | hypothetical protein TERM 3030 3299575 - 3299561 - G 75 -7 -4.3739 | CATTTGCTCACAAAA GCCTCG CCG CGCGGC AACAGCTCCGGATAG RPE_2946 3300162 - 3302219 + | DNA topoisomerase IV subunit B RPE_2947 3302857 - 3302267 - | electron transport protein SCO1/SenC RPE_2948 3303486 - 3302950 - | hypothetical protein TERM 3031 3303258 - 3303226 - G 79 -13.4 -3.67976 | gap 1, opp_overlap 3303237 TTCATGAACTTCAAA CCGCCCGGCGAC-CG GCGA CGTGCCGCCGAGCAG CCGGTCCGGCACCGC RPE_2949 3304025 - 3303486 - | membrane antigen TERM 3032 3303791 - 3303801 + g 72 -8.2 -4.06611 | opp_overlap 3303783 GAACCCAGTCGCCCT CGGC GAA GCCG TTCTTGTTGTCCTTG RPE_2950 3304371 - 3304535 + | DNA topoisomerase IV, B subunit TERM 3033 3304661 - 3304697 + G 75 -9.2 -4.16397 | opp_overlap 3304642, overlap 3304644 3304663 3304681 CCGTAACGGAGCGAT CCGCGCCGCGATCGGC CTGTT GCAGGGCGTGGCGCTG TATTTTCTTTTCACG TERM 3034 3304663 - 3304695 + G 70 -10.4 -3.66251 | opp_overlap 3304642, overlap 3304644 3304661 3304681 GTAACGGAGCGATCC GCGCCGCGATCGGC CTGTT GCAGGGCGTGGCGC TGTATTTTCTTTTCA TERM 3035 3304681 - 3304699 + G 85 -5.2 -5.07652 | overlap 3304663 3304661 CCGCGATCGGCCTGT TGCAGGGC GTG GCGCTGTA TTTTCTTTTCACGGC TERM 3036 3305387 - 3305435 + G 73 -13.8 -3.21099 | opp_overlap 3305393 3305394 GGCGCCGCTGTGGGA CACCAAGCGTGCCGCAGCGATC CTGCT GATCGCCGCTGCAAGTCTGGTG TTCCTGCTCAACGCC RPE_2951 3304560 - 3306434 + | hypothetical protein RPE_2952 3306628 - 3306431 - | XRE family plasmid maintenance system antidote protein TERM 3037 3306836 - 3306875 + G 70 -13.6 -3.01712 | gap 1, opp_overlap 3306818 3306819 TGGCAGCGCTACGCG TCGCCGTCGTCGGG-CG TCCGCCT CGACCTGCCGACGGCGA TCTTCACCGAGGCCG RPE_2953 3306755 - 3307219 + | hypothetical protein RPE_2954 3307312 - 3307500 + | hypothetical protein RPE_2955 3307509 - 3308960 + | hypothetical protein RPE_2956 3310468 - 3308984 - | peptidase C14, caspase catalytic subunit p20 TERM 3038 3309729 - 3309747 + g 83 -14.6 -3.64703 | opp_overlap 3309715 ACCGGCACCTGGCGA TGGCCGAC GGT GTCGGCCA TTTCGCTGACCAAAC TERM 3039 3309956 - 3309992 + g 70 -10.8 -3.61398 | gap 2, opp_overlap 3309914 3309917, overlap 3309957 CGCCAGCCCGCCGCC GCCG-GCGAGCGCG-CGG GTG CCGCCGCGCTCGAACGGA TTGTTGCGGCAGGCG TERM 3040 3310438 - 3310420 - G 73 -6.6 -4.32034 | CCAGCATCAGCAAAA GTGCCGCC AGC GTCGACAC CATCGCCGCCCTGAT RPE_2957 3312764 - 3310566 - | TonB-dependent receptor RPE_2958 3313199 - 3312816 - | hypothetical protein TERM 3041 3313844 - 3313829 - g 76 -6 -4.56775 | opp_overlap 3313839, overlap 3313788 3313830 3313831 ACGCTGCTGGAAAAA GGCCGC GCCC GCGCCC GGATGCCGCGCACCT TERM 3042 3315061 - 3315040 - g 70 -11.5 -3.39327 | GGCCGAGACCGAGAA CGCGGCTCC GGCC GCAGCCGCG CCCCAGCAGCCGCCC RPE_2959 3313634 - 3315187 + | DEAD/DEAH box helicase domain-containing protein RPE_2960 3315326 - 3316393 + | diguanylate cyclase RPE_2961 3317931 - 3316597 - | transposase, IS4 family protein RPE_2962 3318598 - 3318197 - | iron-sulfur cluster assembly accessory protein RPE_2963 3319036 - 3318668 - | hypothetical protein RPE_2964 3320280 - 3319033 - | SufS subfamily cysteine desulfurase RPE_2965 3321596 - 3320277 - | FeS assembly protein SufD RPE_2966 3322370 - 3321615 - | FeS assembly ATPase SufC TERM 3043 3322020 - 3322008 - G 72 -4.8 -4.57073 | overlap 3322009 3322010 CACCTTCTTCAAAAA CTCG GGCGT CGAG AACTCGCCCTCGCCG TERM 3044 3322453 - 3322507 + r 100 -20 -3.81488 | opp_overlap 3322452 3322451, overlap 3322457 GACTGTCTTCAAATC CGTTGCTCATTGTCCGGGATGTCCGC TTT GCGACCATTCCGGACGATGGGCTGCG TTCTATTTCAGCACG TERM 3045 3322457 - 3322503 + r 90 -20.2 -2.68952 | opp_overlap 3322452 3322451, overlap 3322453 GTCTTCAAATCCGTT GCTCATTGTCCGGGATGTCCGC TTT GCGACCATTCCGGACGATGGGC TGCGTTCTATTTCAG RPE_2967 3322759 - 3322541 - | hypothetical protein RPE_2968 3324285 - 3322759 - | cysteine desulfurase activator complex subunit SufB RPE_2969 3325532 - 3324360 - | aminotransferase, class V TERM 3046 3324662 - 3324607 - G 72 -11.8 -3.57144 | gap 1, opp_overlap 3324614, overlap 3324584 3324650 CCGGCGAGGTCGAAA CCGATCACCGCGGTCTCCGC-CTTCAG CCC CGGAAGCGCGAACAGCGTGGTGTTCGG CAGCCGCGCGACGTC TERM 3047 3325608 - 3325590 - H 75 -11.6 -3.65351 | opp_overlap 3325595, overlap 3325563 GGATTTCCAGTCAAA CCCGCGGC ATT GCCGAGGG GCGCAGTGCCTGTTC RPE_2970 3325795 - 3326442 + | hypothetical protein TERM 3048 3326482 - 3326444 - T 86 -15.3 -3.54459 | gap 1 CCAACGTCCGCTAAA CCTTAGCGCCGCGGCCCT ACTC AGGGCCGCG-CGATCAGG CCGCCGGTCATCGGG anmK 3327567 - 3326464 - | anhydro-N-acetylmuramic acid kinase RPE_2972 3327736 - 3328992 + | tyrosyl-tRNA synthetase RPE_2973 3332877 - 3329134 - | hypothetical protein TERM 3049 3331245 - 3331264 + g 78 -15 -3.27923 | opp_overlap 3331237 3331238 CGATGAAGCCGGAGC CGGCGACG CCGA CGTCGCCG TTGCTGATATTGGCC TERM 3050 3331336 - 3331315 - G 72 -11.5 -3.53012 | overlap 3331298 GCTGTCGGTGTCAAA CCGCAGCGC GATC GCGATGCGG TTGAAGATCAGCGGC TERM 3051 3331436 - 3331397 - G 70 -10.7 -3.53012 | overlap 3331398 GTGCCGCCGCTGAAA CCGAGCCGCCAATCG TTGATGCTGC CGTTCGGCGGCTCGA GATGCGCCAGCAAGG RPE_2974 3333074 - 3333784 + | redoxin domain-containing protein TERM 3052 3334689 - 3334726 + G 72 -13.3 -3.15544 | gap 1 TCGACGTCGGGCGGA TGGAGGCGGCCGCGCCGC GCG GCGGCGTGGGCGGC-CCG TTCGTGCCGGTGAAG TERM 3053 3335208 - 3335178 - g 71 -9.6 -3.78953 | overlap 3335179 ATCTGCACTACGAAA CCCGTATCGACGGC GAA GCCGTCGACCCGCA GAAATTTTTGCGCGC RPE_2975 3333884 - 3335251 + | peptidase M23B RPE_2976 3336392 - 3335424 - | peptide chain release factor 2 RPE_2977 3339156 - 3336664 - | 1A family penicillin-binding protein TERM 3054 3339102 - 3339062 - G 76 -5.9 -4.56775 | overlap 3339064 3339072 AGGTCCTTCGAAAAA TGCCAGATCAGCCCGGCCG CCG CGGCGACGCCGACCAGGAA CACGATGGTCCCAGC TERM 3055 3339269 - 3339279 + r 74 -2.4 -4.82901 | CGTCGACTAATCGAT CGCG CGC CGCC TTTTTATAGGAGACA RPE_2978 3340613 - 3339327 - | N-acetylmuramoyl-L-alanine amidase TERM 3056 3339397 - 3339369 - G 79 -7.4 -4.56597 | gap 1, opp_overlap 3339374 3339375 TCGTTTGCCGAAAAA TCGG-TCGATCGC CTGC GCGACCGCGCCGA CCGTCTTGATTCGCC TERM 3057 3340987 - 3340971 - H 71 -9.3 -3.80573 | overlap 3340972 CGCACGACCACTAAA TCGGCCC GCA GGGCCGC GACAAACGACAGCCG TERM 3058 3340986 - 3340972 - H 70 -12.8 -2.88023 | overlap 3340971 GCACGACCACTAAAT CGGCCC GCA GGGCCG CGACAAACGACAGCC TERM 3059 3341165 - 3341123 - H 100 -19.9 -4.43844 | gap 1, opp_overlap 3341117 3341148, overlap 3341124 CCAGGATCCACAAAA TCGACGCGCCGCTGCGAAGC AATA GCTTCGC-GCGCCGCGTCGC CCGGGGTCTTCAATC TERM 3060 3341164 - 3341124 - H 100 -23.4 -3.25824 | gap 1, opp_overlap 3341117 3341148, overlap 3341123 CAGGATCCACAAAAT CGACGCGCCGCTGCGAAGC AATA GCTTCGC-GCGCCGCGTCG CCCGGGGTCTTCAAT TERM 3061 3341245 - 3341298 + H 76 -8.5 -4.13767 | opp_overlap 3341230, overlap 3341249 GGTGGACCGTCGCGT CACCCGGCCGCGCCGTGCGCGCTGG CCGT CAAGCGCGCATTCCGCCGCCATGAG TTTTCCAATGCCCAA TERM 3062 3341817 - 3341773 - g 93 -11.2 -4.30576 | gap 1, overlap 3341774 3341797 CGCCTACGACGAAAA CGGGGCGCCACAGCC-CGGCG AACA CGCCGAGGCGGCCGCGCCGCC CTCGCCCGCCGAGAA TERM 3063 3341816 - 3341774 - g 76 -14.7 -3.18024 | gap 1, overlap 3341773 3341797 GCCTACGACGAAAAC GGGGCGCCACAGCC-CGGCG AACA CGCCGAGGCGGCCGCGCCGC CCTCGCCCGCCGAGA TERM 3064 3343824 - 3343774 - g 93 -18.9 -3.2794 | gap 1, opp_overlap 3343815, overlap 3343757 CCGCACCGAGACGAA CGGCGACGGCGAGCGGCGGCCGCG GCGG CGCGGACGCCG-TGGCGGTCGACG TCGGCGCGGTACCGG TERM 3065 3344244 - 3344213 - g 90 -18.8 -3.05384 | overlap 3344224 CCGGCCTCGACGGAA GCTTCAACCGACGC CGCG GCGCCGGTCGAAGC CGTGGCGCCCGAGCC RPE_2979 3341294 - 3344344 + | ribonuclease TERM 3066 3344402 - 3344363 - T 75 -13.6 -3.0094 | opp_overlap 3344372, overlap 3344372 CGCTACCGACACAGA CATGAAAAAGCCGCTCGG TCAC CCGGGCGGCTTTTTTGTG GTCGGGACTCGCAAG TERM 3067 3344393 - 3344372 - T 100 -12.9 -4.86133 | opp_overlap 3344372, overlap 3344363 CACAGACATGAAAAA GCCGCTCGG TCAC CCGGGCGGC TTTTTTGTGGTCGGG TERM 3068 3344372 - 3344393 + T 100 -15.1 -5.31275 | opp_overlap 3344363 3344372 CACAGACATGAAAAA GCCGCTCGG TCAC CCGGGCGGC TTTTTTGTGGTCGGG RPE_2980 3345653 - 3344451 - | aminotransferase, class I and II TERM 3069 3347024 - 3347039 + G 100 -11.8 -4.56597 | opp_overlap 3346999 CCAGGCCGACCTCGC CGCGGC GCAG GCCGCG TTTTTGCGCGGCGAC RPE_2981 3345765 - 3347177 + | peptidase M48, Ste24p RPE_2982 3347981 - 3347190 - | alpha/beta hydrolase fold RPE_2983 3348240 - 3349007 + | DSBA oxidoreductase RPE_2984 3349139 - 3349396 + | hypothetical protein RPE_2985 3349611 - 3350297 + | hypothetical protein TERM 3070 3350327 - 3350345 + F 100 -17.4 -4.81083 | opp_overlap 3350325 CCCGATCACCCAATG GGGCGGCC TAC GGCCGCCC TTTTTGCTGCTTAGA RPE_2986 3350741 - 3351196 + | 3-dehydroquinate dehydratase RPE_2987 3351232 - 3351714 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein RPE_2988 3351837 - 3353192 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 3071 3353864 - 3353920 + G 73 -10.8 -3.69323 | CCGACCGCAGCCAGT CGCTGGCG-GCGATCGTCACCACGTCCG GCT CGGGGCTGGTGCTGGT-GCTCGCCGGCG TTTCGATCATCCTGG TERM 3072 3354588 - 3354598 + G 72 -8.2 -4.14392 | GGGCCAGGAACGGTT CGGC TTT GCCG TTTTCGAAGTTACCG RPE_2989 3353314 - 3354843 + | multi-sensor signal transduction histidine kinase RPE_2990 3354840 - 3355280 + | response regulator receiver protein TERM 3073 3355585 - 3355571 - g 75 -9.2 -4.08767 | opp_overlap 3355571 GTCACCGCGCTAAAA GCCGGC GCC GCCGAC TATCTGATGAAAGAT RPE_2991 3355277 - 3356383 + | signal transduction histidine kinase TERM 3074 3356979 - 3357035 + G 82 -17.2 -2.82516 | opp_overlap 3356968 ATGACCAGCTCTACG ACGCCGGCGGCCTCGCCGCCGCGC-ACG CGG CGTTGCGCGACGGCGGCGT-GCTGGCGG TGTGGTCGTCGGGGC RPE_2992 3356417 - 3357190 + | hypothetical protein RPE_2993 3358991 - 3357171 - | radical SAM domain-containing protein aat 3359139 - 3359828 + | leucyl/phenylalanyl-tRNA--protein transferase TERM 3075 3359829 - 3359863 + T 78 -9.9 -4.07885 | gap 1, opp_overlap 3359823 ACCCCGAAACGCTAG CTCGCAGC-GCCGATC AACG GAACGGCGGCAGCGGG TTTTGCGGCGGGCTC RPE_2995 3360768 - 3359842 - | hypothetical protein TERM 3076 3360442 - 3360467 + g 70 -11.1 -3.56092 | gap 1 CGGGGCTACCGCAGG CGCCGTCGCGGT GCC GCCG-GGCGGCG TTTGCGGAATGATGG TERM 3077 3360928 - 3360880 - H 70 -10.2 -3.54307 | overlap 3360869 3360881 AATACGGCGGCGAAA GGGCGGCGCGACCA-CTGCGCACG CCG CGTGTGAAGGTTG-CGCGCCGCCG GCTGGTCAGGCTGCG TERM 3078 3360927 - 3360881 - H 72 -13.7 -2.72263 | overlap 3360869 3360880 ATACGGCGGCGAAAG GGCGGCGCGACCA-CTGCGCACG CCG CGTGTGAAGGTTG-CGCGCCGCC GGCTGGTCAGGCTGC RPE_2996 3360990 - 3361937 + | alpha/beta hydrolase domain-containing protein TERM 3079 3361973 - 3361963 - T 100 -2.4 -5.96219 | opp_overlap 3361965, overlap 3361964 3361965 CAGCCATAAAAAAAA TGGG AGC CCCG GCGCGCTTTTGACCT RPE_2997 3362382 - 3362110 - | hypothetical protein TERM 3080 3362461 - 3362442 - R 100 -15 -5.4505 | GTTGGCAAGAAAAAA GGCCGGCA TCGC TGCCGGCC TCAGTCCTGAAAGTA RPE_2998 3363213 - 3362554 - | putative outer-membrane immunogenic protein precursor RPE_2999 3363499 - 3364107 + | hypothetical protein RPE_3000 3366468 - 3364132 - | adenylate/guanylate cyclase TERM 3081 3365288 - 3365276 - G 77 -7.7 -4.36914 | opp_overlap 3365276 GGCCGGTCGACAAAA TCCTG CGC CAGGA TCTGCTCGATCAGCT TERM 3082 3366346 - 3366302 - G 80 -14.1 -3.73953 | overlap 3366340 AGCAGCGTTAGCAAA GCGGCGGTGACCGCGCGCC CGGTCTT GCCGCGCGCAAACCGCCGC AGCCTCGCGCCCAAC RPE_3001 3366766 - 3367194 + | hypothetical protein RPE_3002 3368898 - 3367201 - | hypothetical protein TERM 3083 3368391 - 3368345 - G 91 -17.1 -3.73968 | opp_overlap 3368340, overlap 3368333 3368346 AAACCGGCGACGAAA TTCGGCGGCGGCGGTCCGGGG GGCGA CGGCGGTCCGCCGCCACCGAC CTGGGTGAATTCGCC TERM 3084 3368390 - 3368346 - G 100 -20.6 -2.83899 | opp_overlap 3368340, overlap 3368333 3368345 AACCGGCGACGAAAT TCGGCGGCGGCGGTCCGGGG GGCGA CGGCGGTCCGCCGCCACCGA CCTGGGTGAATTCGC RPE_3003 3370274 - 3368910 - | hypothetical protein RPE_3004 3371393 - 3370575 - | hypothetical protein TERM 3085 3370981 - 3371016 + g 70 -11.9 -3.36823 | overlap 3370978 3370975 3370982 3371015 GCTGCGGCTTTGGTC G-CGGCGGCCGCAGACT TCTG AGTCCGCGGC-GCCGTC TTCGGTTTTGCCGAA TERM 3086 3370982 - 3371014 + g 80 -15.6 -3.25113 | gap 1, overlap 3370978 3370981 3370975 CTGCGGCTTTGGTCG CGGCGGCCGCAGACT TCTG AGTCCGCGGC-GCCG TCTTCGGTTTTGCCG RPE_3005 3371902 - 3371684 - | hypothetical protein RPE_3006 3372138 - 3371899 - | hypothetical protein TERM 3087 3372253 - 3372232 - R 100 -17.3 -3.90112 | TTCTCCGCAACGAAA CGGCCTCCC TTTC GGGAGGCCG CTGGGCTCGCAGGCG RPE_3007 3372885 - 3372370 - | MarR family transcriptional regulator TERM 3088 3372900 - 3372911 + H 76 -5.8 -4.56775 | TGACATTCCCCTGTC GTCG TTTT CGAC TTTTTCGACGAAACT TERM 3089 3373385 - 3373353 - H 73 -6.3 -4.29738 | gap 1, opp_overlap 3373352 3373356 3373378, overlap 3373354 3373356 GCACATGGATGAAAA CGACGATGGCCGGG ACGAAG CCCGGCCATGAT-G CTTGGATTGGTGTAC RPE_3008 3373380 - 3373922 + | delta-aminolevulinic acid dehydratase RPE_3009 3374091 - 3375149 + | delta-aminolevulinic acid dehydratase RPE_3010 3375405 - 3375947 + | RDD domain-containing protein RPE_3011 3376019 - 3376795 + | arginyl-tRNA-protein transferase RPE_3012 3377180 - 3376878 - | transglycosylase-associated protein RPE_3013 3378059 - 3377382 - | SOUL heme-binding protein TERM 3090 3377692 - 3377720 + g 84 -7.3 -4.77036 | opp_overlap 3377658, overlap 3377688 3377685 3377682 CCGCTGCCCTGCTGC GAGACCGGCGCGG TCA TCGCAATGGTCTC TTTTTGCTGCTGCAC RPE_3014 3379395 - 3378196 - | signal transduction histidine kinase RPE_3015 3380926 - 3379550 - | manganese transport protein MntH TERM 3091 3380918 - 3380944 + g 71 -2.9 -4.70319 | opp_overlap 3380909, overlap 3380920 3380922 CAAAATCGGGGGTCT CGCGTCCATGG CGGGA CCATGAATGAG TTTTACTTTTAATGC RPE_3016 3381177 - 3381356 + | hypothetical protein TERM 3092 3381436 - 3381470 + T 81 -7.2 -4.48713 | gap 2, opp_overlap 3381435, overlap 3381437 ACCAACCTTATCAAC G-CGT-CATGGCCGGG CTCGT CCCGGCCATCCACGTC TTTGTTCTTGCTCGG TERM 3093 3381437 - 3381468 + T 79 -10.9 -3.8457 | gap 1, opp_overlap 3381435, overlap 3381436 CCAACCTTATCAACG CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGTTCTTGCTC RPE_3017 3383813 - 3381552 - | DNA topoisomerase IV subunit A TERM 3094 3382339 - 3382357 + g 82 -11.7 -4.07568 | opp_overlap 3382332 TCGGCAAAGCTGGTG CGGCGCT TGCCC AGCGCCG TTTTGGGCCCGAACA recO 3384634 - 3383858 - | DNA repair protein RecO TERM 3095 3384113 - 3384071 - G 100 -12 -4.56597 | opp_overlap 3384071 3384076 3384107 3384108 GTCTTCGCGTAAAAA CGGCGGC-AGCCGCAGCAGC TTGTC GC-GCCACGGCTCGCCGGCG GTCCGCGACACCGCG TERM 3096 3385727 - 3385706 - g 75 -4.3 -4.59773 | gap 1, overlap 3385707 3385719 GCTGATCGCCAAAAA GGCCGCCGAC GAA GCCG-CGGCA CGGGACGGCGAGGAA TERM 3097 3386169 - 3386194 + G 83 -12.5 -4.15565 | gap 1, overlap 3386170 GCCACGATCGAGGCG GCGCGCGCCGGC GAA GCCGGC-CGCGG TTTTGCGGTGGTCGC TERM 3098 3386170 - 3386193 + G 78 -16 -3.09018 | gap 1, overlap 3386169 CCACGATCGAGGCGG CGCGCGCCGGC GAA GCCGGC-CGCG GTTTTGCGGTGGTCG TERM 3099 3386510 - 3386491 - g 75 -11.4 -3.64703 | opp_overlap 3386491 GCGGCGCCACCGAAA CCGGGTCG GCGT CGACCCAG GTGCTGTCCGCCGCG RPE_3019 3384909 - 3386600 + | methyl-accepting chemotaxis sensory transducer RPE_3020 3387106 - 3386726 - | hypothetical protein era 3388050 - 3387109 - | GTP-binding protein Era RPE_3022 3388849 - 3388043 - | ribonuclease III RPE_3023 3389604 - 3388846 - | peptidase S26A, signal peptidase I TERM 3100 3388984 - 3389014 + g 78 -14.7 -3.34233 | opp_overlap 3388982 3388986 GTACGGCACGTAACC CACCGCCGACAGC ACCCG GCTGTCGGTGGAG TTGTCGCGATTATCG TERM 3101 3389743 - 3389730 - R 71 -9.5 -3.68529 | opp_overlap 3389735 AGCTCAGCACCGAAA CCGGC CTGC GCCGG ATTCCCGCGCGGTTT TERM 3102 3389735 - 3389755 + r 81 -10.3 -4.11484 | opp_overlap 3389730 AGCACCGAAACCGGC CTGCGCCGG ATT CCCGCGCGG TTTTAGACCGTTGCG acpS 3390280 - 3389861 - | 4'-phosphopantetheinyl transferase TERM 3103 3390214 - 3390193 - G 72 -8.7 -4.07568 | overlap 3390194 3390206 3390210 CGGCGGGCGTGAAAA CGCGATCGA GGAA TCGATCGCC GTGCCGCTCGATCAC RPE_3025 3391044 - 3390277 - | pyridoxal phosphate biosynthetic protein PdxJ RPE_3026 3393357 - 3391078 - | (p)ppGpp synthetase I, SpoT/RelA TERM 3104 3391536 - 3391582 + g 83 -15.7 -3.61398 | gap 1, overlap 3391539 GGATCACCGAGGTGA CGCGCCCGGCGCCGGCC-GGCT TCGC GGCCTGGTCGGCGGCGGGCTCC TTCTTGCCGGCAAAG TERM 3105 3391539 - 3391579 + g 100 -20.4 -2.93073 | gap 1, overlap 3391536 TCACCGAGGTGACGC GCCCGGCGCCGGCC-GGCT TCGC GGCCTGGTCGGCGGCGGGC TCCTTCTTGCCGGCA TERM 3106 3393704 - 3393726 + r 100 -11.2 -4.82667 | opp_overlap 3393704 GGCCGAATACAAAAA CGGCCCGGAG AGC TTCCGAGCCG TTTTTAATCTCGTAG TERM 3107 3393726 - 3393704 - R 100 -12.7 -5.0916 | opp_overlap 3393704 GGCCGAATACAAAAA CGGCCCGGA GAGCT TCCGAGCCG TTTTTAATCTCGTAG RPE_3027 3394174 - 3393782 - | DNA-directed RNA polymerase subunit omega TERM 3108 3394652 - 3394667 + G 74 -2.4 -4.72272 | overlap 3394647 AATTTCAGAGCCGCG GTACGC TGGT GCGGGC TTTTTACTACACCGC RPE_3028 3394534 - 3395163 + | hypothetical protein RPE_3029 3395201 - 3395878 + | uracil-DNA glycosylase superfamily protein TERM 3109 3395934 - 3395892 - T 78 -15.7 -2.71011 | gap 1, opp_overlap 3395888 AGCTCTGTTGAATCA CCACGCTCACAGCGTCATCC TGAA GGATGACGCT-TGCGCGTTG CGGCTTCGCTGAGTT TERM 3110 3395986 - 3396037 + T 71 -5 -4.45544 | gap 1, opp_overlap 3395977, overlap 3396019 AAGCAAGGCCCGCGC GGGTCGGCTGCGGTTGG-GAAGG CGCTATC CCTTGGCCCGCATCAGCCGGCCC TTTTCCTTGCTCCAG smpB 3396483 - 3396010 - | SsrA-binding protein RPE_3031 3396963 - 3396550 - | large conductance mechanosensitive channel protein RPE_3032 3397903 - 3397013 - | dihydrodipicolinate synthase RPE_3033 3398187 - 3398648 + | BadM/Rrf2 family transcriptional regulator RPE_3034 3398662 - 3399453 + | methyltransferase type 11 RPE_3035 3399916 - 3399509 - | cupin 2 domain-containing protein TERM 3111 3399895 - 3399864 - G 73 -6.4 -4.37092 | gap 1, overlap 3399866 ACTGCTCCGACAAAA TACTCTGCCGGCGCG CGC CGCGTCGGCCGCG-A GCCGTCCGCAAAAAT TERM 3112 3399894 - 3399866 - G 79 -11.5 -3.79419 | overlap 3399864 TGCTCCGACAAAATA CTCTGCCGGCGCG CGC CGCGTCGGCCGCG AGCCGTCCGCAAAAA TERM 3113 3399960 - 3399933 - R 91 -9 -4.56597 | gap 1, opp_overlap 3399935, overlap 3399934 3399935 GTCGCCTCCCAAAAA GGCCCG-CGGCGC TTG GCGCCGTCGGGTG TCGCCGCGTTAGCTC TERM 3114 3399959 - 3399934 - R 74 -12.5 -3.33744 | gap 1, opp_overlap 3399935, overlap 3399933 3399935 TCGCCTCCCAAAAAG GCCCG-CGGCGC TTG GCGCCGTCGGGT GTCGCCGCGTTAGCT TERM 3115 3399958 - 3399935 - R 80 -16 -2.60032 | gap 1, opp_overlap 3399935, overlap 3399934 3399933 CGCCTCCCAAAAAGG CCCG-CGGCGC TTG GCGCCGTCGGG TGTCGCCGCGTTAGC RPE_3036 3400720 - 3399980 - | hypothetical protein RPE_3037 3400924 - 3401658 + | hypothetical protein TERM 3116 3401829 - 3401841 + G 82 -6.2 -4.82901 | overlap 3401828 GCCATCGAGATCGGC CCGC TCGGC GCGG TTTTTGTCGCGCAAG RPE_3038 3401655 - 3402659 + | allophanate hydrolase subunit 2 TERM 3117 3402762 - 3402715 - f 88 -17.2 -3.06183 | gap 1, opp_overlap 3402720, overlap 3402720 3402731 GTCATTGCGAGCGAA GCGAAGCAATCCAGAAGC-GC CCAGCAC GCAGCCGCTGGATTGCTTCGC TGCGCTCGCAATGAC RPE_3039 3402802 - 3403569 + | hypothetical protein TERM 3118 3403577 - 3403625 + F 91 -16 -3.61774 | gap 2, overlap 3403578 GGGGCTGAGACTTCG TGTCCCGG-GC-GCGATGCGGCAC GCC GTGCCGCTTCGCAGAACCGGGACC TTTACGGATGTTGTG TERM 3119 3403578 - 3403624 + F 90 -19.5 -2.76583 | gap 2, overlap 3403577 GGGCTGAGACTTCGT GTCCCGG-GC-GCGATGCGGCAC GCC GTGCCGCTTCGCAGAACCGGGAC CTTTACGGATGTTGT TERM 3120 3403707 - 3403739 + F 70 -7.6 -4.08706 | gap 1, opp_overlap 3403704, overlap 3403709 CACGCCGCAAGAGCG GCGCGT-TGCGCCCC GTCC GGGGCACGCACGCTC TTTGTCTGCTCAGAA TERM 3121 3404580 - 3404599 + G 74 -7.8 -4.21194 | opp_overlap 3404590 TGAAGATTTCCGAGG GCTGCAAC AACC GCTGCAGC TTTTGCATCATCCCA RPE_3040 3404141 - 3405466 + | hypothetical protein TERM 3122 3405454 - 3405506 + T 82 -14.4 -3.36175 | gap 3, overlap 3405440 3405449 TCTGCACGGCACCGT GGCG-GGTTTCTAACCTCTCCCCGC TCTTGC GCGGGGAGAGGT--GAAGCCGTGCC TTGTCGCTACAAGTT RPE_3041 3406459 - 3405572 - | hypothetical protein RPE_3042 3406932 - 3407888 + | transposase, IS4 family protein RPE_3043 3408491 - 3408183 - | hypothetical protein TERM 3123 3408473 - 3408445 - G 83 -12.3 -4.11216 | opp_overlap 3408460 GTGTCACTCGCAAAA CTCGGGCTCGCAG GAG CCGCGAGACCGCG ACCGTGGCTGTTTGA RPE_3044 3409450 - 3408683 - | hypothetical protein TERM 3124 3409073 - 3409049 - G 73 -4.1 -4.59773 | overlap 3409050 3409051 GGTGATGGCGAAAAA CGCGATGCCGC TGA GCGGCACGATG GCGAAGGCGATGCCC TERM 3125 3409384 - 3409356 - G 79 -8 -4.54477 | GCAAAACCGACAAAA GCGGTGGCGGCG CAGGT CAGCGCCATCGC GACATAAAACTTCGA RPE_3045 3411505 - 3409883 - | peptide chain release factor 3 TERM 3126 3411620 - 3411637 + H 71 -14.1 -2.62184 | CAAAATCACCCTTTC GGCCGGG ACGA CCCGGCC TCCTGTCGACGACGC TERM 3127 3411663 - 3411686 + H 74 -5.1 -4.65895 | opp_overlap 3411660, overlap 3411660 3411662 3411664 3411665 GACGCAAGCGAAGGC GGCGGCCGC CGTTCT GCGGCCGGA TTTTTGGATCCCGCC RPE_3046 3411724 - 3412038 + | small multidrug resistance protein RPE_3047 3413102 - 3412098 - | phosphate transporter TERM 3128 3412430 - 3412400 - G 72 -8.8 -4.08767 | overlap 3412401 GCCAGCCGCCCAAAA GCGTGCCGAGCGCC ATC GCCGCCTGGCACGA GATCACCACCCAGAA RPE_3048 3413773 - 3413117 - | hypothetical protein TERM 3129 3413742 - 3413720 - G 78 -6.2 -4.62302 | overlap 3413710 GAACAGGTCGAAAAA CCTCTCCTCC CGC GGCAGAAAGG CGCGAAACCAACTCA TERM 3130 3415032 - 3414989 - g 78 -14.6 -3.30443 | gap 1, overlap 3414974 CGAGCAGCAGATCAA GGCGCTGATCGGC-CGCGA GGCCGAA TTGCGCGCCGAGCAGCGCC AGATCGAGCAGACCG RPE_3049 3414357 - 3416231 + | hypothetical protein TERM 3131 3416272 - 3416303 + T 74 -9.4 -3.84719 | gap 1, overlap 3416274 3416276 CGCGTTCCCGTGCGG TGTT-CCGTCCGGCC TCT GGCCGGGCGGTGATG TTTGCCTTTGCGCCT TERM 3132 3416274 - 3416301 + T 74 -12 -3.50832 | gap 1, overlap 3416272 3416276 CGTTCCCGTGCGGTG TT-CCGTCCGGCC TCT GGCCGGGCGGTGA TGTTTGCCTTTGCGC TERM 3133 3416276 - 3416298 + T 90 -18.4 -2.88653 | overlap 3416274 3416272 TTCCCGTGCGGTGTT CCGTCCGGCC TCT GGCCGGGCGG TGATGTTTGCCTTTG TERM 3134 3416793 - 3416768 - T 100 -21.9 -4.05714 | ACTCCGAACGACAAA GGGCGGCGAGG TCAC CCTCGCCGCCC CCTCGTCAAAACGCT RPE_3050 3417267 - 3416818 - | hypothetical protein TERM 3135 3417423 - 3417383 - R 85 -6.2 -5.00884 | opp_overlap 3417397 AGGTCCGCTAAAAAA CATTGATGCAGAGCTACA AATTG TATCGCTTCGCACCAATG AACCGCTAGATAGTG RPE_3051 3418523 - 3417555 - | inner-membrane translocator RPE_3052 3419400 - 3418525 - | inner-membrane translocator TERM 3136 3419457 - 3419432 - R 81 -13.9 -3.54424 | opp_overlap 3419433 3419450, overlap 3419433 CGTCATCCGGGGAAA TGCCCGGCGGC GCGA ACCGCCGGGCT TCGGGCTTGGCTTGT TERM 3137 3419456 - 3419433 - R 84 -17.4 -2.72511 | opp_overlap 3419433 3419450, overlap 3419432 GTCATCCGGGGAAAT GCCCGGCGGC GCGA ACCGCCGGGC TTCGGGCTTGGCTTG RPE_3053 3420702 - 3419482 - | ABC transporter substrate-binding protein RPE_3054 3421518 - 3420739 - | ABC transporter related RPE_3055 3422266 - 3421511 - | ABC transporter related TERM 3138 3422234 - 3422213 - G 79 -2.9 -5.09426 | GCGAACGGCAAAAAA GCCGGCGAA CTCT TTCGTCAAC CCATGGGTTTCGAGA RPE_3056 3422596 - 3423084 + | hypothetical protein TERM 3139 3423865 - 3423907 + G 72 -8.2 -4.14243 | ACCTGCTGGCGATCG TGCCGCAGGGCGGGCTCGAC CAC GTCGACCTCGACGAGCCGCA TTTTGCGATCGAATG TERM 3140 3424143 - 3424178 + G 86 -16.2 -3.54029 | gap 1, opp_overlap 3424134 AAAGACCGCGCCGAT CTCGACTTCGTCGCGCG CCA CGC-CGACGGCGTCGAG TTCTCCTTCGTGCAG RPE_3057 3423201 - 3424712 + | pyruvate kinase RPE_3058 3425025 - 3424678 - | hypothetical protein RPE_3059 3426331 - 3425333 - | hypothetical protein TERM 3141 3426390 - 3426364 - R 74 -14.4 -2.55 | GAATAGTTGAACTGA CACGGCGCCG ATCGACA CGGCGCCGCG CACGGCGGTCGTCGT RPE_3060 3427097 - 3426423 - | phage shock protein A, PspA TERM 3142 3426851 - 3426863 + g 77 -10.5 -3.92373 | CGCGGCCTTCCTTGA GCGCG AAC CGCGC TTTGTCGGTCAACTC TERM 3143 3426900 - 3426941 + g 73 -12.1 -3.44146 | overlap 3426926 3426926 CTTCTTGCCGATCAT CTCCTGCTGGCGTGCCGCC TGCA GCCGGCGCGCCATCACGCG TTCCTTGTCGGCGCG RPE_3061 3427240 - 3427824 + | LemA family protein TERM 3144 3427945 - 3427955 + G 75 -4.6 -4.57581 | GCGGTGCAAGTGATC GCCG CTC TGGC TTTGTTCTTTCCAGT RPE_3062 3427849 - 3429822 + | peptidase M48, Ste24p TERM 3145 3431504 - 3431481 - g 70 -11 -3.57144 | opp_overlap 3431481 GCGTCGACGTGCAAA GGCTCACCGA GCAT TCGGTGATCC TGACCGACGGCACCG RPE_3063 3430040 - 3431842 + | putative flavoprotein involved in K+ transport TERM 3146 3431852 - 3431886 + T 82 -15 -3.33696 | AGCTGAGCATCCGGC GCTGTGGGCGGGGC CTCGAGC GACCCGCTCACAGC TTCCTTGCGAGCGGC RPE_3064 3432415 - 3431909 - | hemerythrin HHE cation binding domain-containing protein RPE_3065 3433565 - 3432555 - | hypothetical protein TERM 3147 3432666 - 3432652 - G 71 -12.8 -3.21924 | overlap 3432650 3432653 CGAGTTCGGACAATA GCGGCG GCC CGCCGC CGGCCCGGCTCACAT RPE_3066 3433852 - 3433562 - | hypothetical protein RPE_3067 3435490 - 3434189 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3148 3434800 - 3434822 + g 70 -4.1 -4.56597 | gap 1, overlap 3434803 CGAAATGAGTTTTGG CGTCGAGGAT CACG ATCCGCG-CG TTTTTGACGCCACGG RPE_3068 3436779 - 3435520 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3149 3435639 - 3435619 - G 83 -12.5 -4.0371 | opp_overlap 3435615 GACTTTTGAGACAAA GCCCTCGGC CTC GCCGATGGC GCCGTCCTTGGGCTC RPE_3069 3437170 - 3436799 - | hypothetical protein RPE_3070 3438413 - 3437331 - | protein of unknown function DUF395, YeeE/YedE TERM 3150 3437476 - 3437420 - G 77 -12.7 -3.70902 | CGGCCCACATCGAAA TCAGCGCGAGCCACGCCGTCACCGCGA AGA TCGCGCCGCCGGTGACGCCGGCGCCGA CCGCGCAGCCGCCGG RPE_3071 3439298 - 3438579 - | cytochrome c, class I TERM 3151 3438647 - 3438663 + g 82 -6.5 -4.72272 | CCCGGCCGAGAATTT TTGGCGC CTC GCGACAA TTTTTCATGCAAGGC RPE_3072 3440562 - 3439282 - | oxidoreductase, molybdopterin binding RPE_3073 3442335 - 3440638 - | 5'-nucleotidase domain-containing protein RPE_3074 3442751 - 3442419 - | putative sulfur oxidation protein SoxZ TERM 3152 3442811 - 3442789 - R 95 -12.6 -4.25104 | CTGCTGTTACGAAAA CCGCCGCGGC CTA GCCGCCGCAG CCGCCGATGGTGACC RPE_3075 3443263 - 3442799 - | sulfur oxidation protein SoxY TERM 3153 3443940 - 3443964 + G 77 -3.6 -4.72272 | gap 1 TCGGCGAAGAGCTGT TCTATCGGCGC GGCG GCGT-GATGGA TTTTTCCTGCGCCAC RPE_3076 3443432 - 3444253 + | hypothetical protein RPE_3077 3444265 - 3444924 + | hypothetical protein TERM 3154 3444999 - 3444951 - f 71 -9.1 -3.78953 | gap 2, opp_overlap 3444955, overlap 3444956 ATTGCGAGCAGCAAA GCCAA-CGAAGCAATCCAG-CCG GACCA CGAACTGAATTGCTTCGCTTCGC TCGCAATGACAGCCT TERM 3155 3444993 - 3444956 - f 72 -12.2 -3.31415 | gap 1, opp_overlap 3444955, overlap 3444951 GAGCAGCAAAGCCAA CGAAGCAATCCAG-CCG GACCA CGAACTGAATTGCTTCG CTTCGCTCGCAATGA TERM 3156 3445373 - 3445342 - g 77 -16.6 -2.73994 | gap 1, overlap 3445339 ATCTTTCGAACATCA GC-CAGCCCGGCATG ATG CAGGCCGGGCTGCGC AATCTGCCCGGTGCG RPE_3078 3445035 - 3445532 + | hypothetical protein TERM 3157 3445535 - 3445567 + T 70 -9.9 -3.63569 | gap 1, overlap 3445539 GCTGGATTTCTAGCG CCATGGCGTGAGGG ACAATC CCCTCACGCC-TGC TTCTTCAGCCATTCC TERM 3158 3445539 - 3445564 + T 83 -16.2 -2.93252 | overlap 3445535 GATTTCTAGCGCCAT GGCGTGAGGG ACAATC CCCTCACGCC TGCTTCTTCAGCCAT RPE_3079 3446139 - 3445558 - | thioredoxin-related protein TERM 3159 3445763 - 3445773 + g 70 -2.4 -4.67011 | opp_overlap 3445729 3445730, overlap 3445748 CGCACGCCGTAGGAT TCGC CGA GCGC TTTTTCGCTCAGCTT RPE_3080 3446910 - 3446167 - | cytochrome c biogenesis protein, transmembrane region TERM 3160 3446753 - 3446722 - G 78 -10.2 -4.08578 | gap 1 AAACCCAAGCACAAA CGCAACGGCCGAG GCCACCA CCCGGCCGTT-CG GCCGGCCGCCCGATT RPE_3081 3446951 - 3447355 + | hypothetical protein RPE_3082 3447370 - 3447747 + | ArsR family transcriptional regulator TERM 3161 3447832 - 3447878 + G 100 -10.1 -4.72272 | gap 2, opp_overlap 3447813 3447812, overlap 3447796 3447833 3447861 TGCAGAGCTTGTCTG CCTGGCTGCTCGCTCTGGTCGGC TTT GCCG-TGGGAGCG-GCAGCCGGA TTTTTCGTCCGCCAC TERM 3162 3447833 - 3447877 + G 75 -13.6 -3.43042 | gap 2, opp_overlap 3447813 3447812, overlap 3447796 3447832 3447861 GCAGAGCTTGTCTGC CTGGCTGCTCGCTCTGGTCGGC TTT GCCG-TGGGAGCG-GCAGCCGG ATTTTTCGTCCGCCA RPE_3083 3447816 - 3448922 + | protein of unknown function DUF395, YeeE/YedE TERM 3163 3449845 - 3449796 - g 70 -4.2 -4.57073 | gap 3, overlap 3449797 GATGTCGGTCAAAAA GGCCGA-GCTG--GCGCGCCAGCAG CAG CTGCCGGCGGGCGACTGCATCGACT GCCATCAATGCATCA RPE_3084 3448978 - 3450495 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein RPE_3085 3451596 - 3450607 - | C4-dicarboxylate transporter/malic acid transport protein TERM 3164 3452236 - 3452218 - g 74 -8 -4.24002 | overlap 3452219 CCGCAAATTCCAAAA CCGGCGGC GAC ACCGCCGC GCTGCCGAAGATCTG RPE_3086 3451974 - 3452414 + | cytochrome c, class II TERM 3165 3452533 - 3452571 + G 91 -13.3 -4.18908 | gap 1, opp_overlap 3452516 3452510 3452543, overlap 3452535 3452537 GCGGCAGCATGCCGC TCTGGCACAAGTGCAACG GCTA CGCTGCACTTGTGCT-GA TTGTTTTCCGCGTCT TERM 3166 3452535 - 3452570 + G 76 -14.8 -3.10622 | opp_overlap 3452510 3452543, overlap 3452533 3452537 GGCAGCATGCCGCTC TGGCACAAGTGCAACG GCTA CGCTGCACTTGTGCTG ATTGTTTTCCGCGTC TERM 3167 3452537 - 3452568 + G 84 -17.4 -3.10579 | opp_overlap 3452543, overlap 3452535 3452533 CAGCATGCCGCTCTG GCACAAGTGCAACG GCTA CGCTGCACTTGTGC TGATTGTTTTCCGCG RPE_3087 3452418 - 3453092 + | cytochrome B561 RPE_3088 3453110 - 3453397 + | hypothetical protein TERM 3168 3453403 - 3453382 - T 70 -7.2 -4.07885 | opp_overlap 3453395 3453398, overlap 3453397 GAGCGTCGTCCAAAA GCCGGCTT CGGAAT AGGCCGGC TGATCCCAGCCGGCT TERM 3169 3453398 - 3453417 + T 75 -15 -2.77899 | opp_overlap 3453382 3453397, overlap 3453395 CCGGCTTCGGAATAG GCCGGCTG ATCC CAGCCGGC TCATTGATCGGCAAG RPE_3089 3453753 - 3453418 - | hypothetical protein RPE_3090 3454307 - 3453807 - | flavodoxin FldA TERM 3170 3454352 - 3454324 - H 73 -8.7 -3.99228 | opp_overlap 3454324, overlap 3454316 3454320 AGAGGAAGCGAGAAA TTCGCGCAGCGCG GAG CGCCCTGCCCGGA TTCCTGTGAAATCGA RPE_3091 3454609 - 3455094 + | Ferritin, Dps family protein TERM 3171 3455131 - 3455107 - f 83 -12.2 -4.07885 | gap 1 TAGCGGCCCCGAAAA GC-CGATCCCG TCTG CGGGATCGTGC TCAAACAACAGCGAG RPE_3092 3455343 - 3455603 + | hypothetical protein RPE_3093 3456558 - 3455674 - | hypothetical protein TERM 3172 3456759 - 3456783 + G 77 -9.9 -3.92324 | GGCATGGTTCTGGCC GCCTGCTGCTG GAT CGGCGGCACGC TTTCCTGTTCCGCGG TERM 3173 3457454 - 3457413 - g 74 -5.7 -4.57073 | gap 1, opp_overlap 3457449, overlap 3457414 3457415 CAGGCTTTTGAAAAA TCCGCCAACGCCGCGGCTGC GGC GCATCC-CGAAGCTGGCGAT CCCGACGCGCCCTTC TERM 3174 3457977 - 3457948 - g 81 -14.9 -3.51232 | opp_overlap 3457946, overlap 3457944 3457952 CGCCGGCCAAAGCAA CGGACGCAGCGGC GCCC GCCACCGCGACCG AATCTATCACCGATG TERM 3175 3458911 - 3458879 - g 72 -8.9 -4.14392 | GCTGAAGCGCGAAAA GCGCGCAGCGATGGC GTC GCCCACGATGCGCTC GGGCAAAGGCCCCGA RPE_3094 3456747 - 3458993 + | FMN-binding domain-containing protein TERM 3176 3459088 - 3459068 - g 71 -13.9 -2.90075 | CTGCTCGGAACCACA GCCGCCGCC GCG GGCGTCGGC CTTGCAGGTGGCCTC RPE_3095 3459011 - 3460957 + | nitrous-oxide reductase TERM 3177 3460989 - 3461019 + G 100 -21.9 -3.57462 | CCTGCTGTTGCGGCT GGTTCCGGCGGCG CTGCT CGCCGCCGGAGCC TTTGGCCCTGCCCTG TERM 3178 3461876 - 3461829 - g 72 -5.5 -4.30576 | gap 3, overlap 3461830 CGCCGACGATGAAAA GGGCATGCTGCCGGA-GTC-GCGC GTG GCGCAGCCCTCCGAC-GAAGGCCC CGGCAAATGCGTGTT RPE_3096 3460957 - 3462327 + | periplasmic copper-binding protein TERM 3179 3462384 - 3462361 - g 79 -8.8 -4.37092 | gap 1, overlap 3462365 AGGGTGTCGATAAAA GCTATCGCGCG GTG CGCGCGCT-GC ACGACGTCTCATTTG TERM 3180 3463129 - 3463114 - g 100 -10.4 -5.10029 | overlap 3463104 ACGAAGCGCAAAAAA TGGCGC TGCT GCGCCA GGCCGCCAGCGATCC RPE_3097 3462324 - 3463229 + | ABC transporter related RPE_3098 3463226 - 3464053 + | nitrous oxide metabolic protein TERM 3181 3464229 - 3464247 + G 70 -6.6 -4.2828 | opp_overlap 3464226 3464229 GATCATCACCAAGAG CCGGATCG ACC CGTTCTGG TTTTCCTCGGTGCGC TERM 3182 3464458 - 3464474 + G 73 -9.3 -3.90112 | GTGCCGTTCGGCGAG CGCGCCG CGG CGGAGCG TTTCGTTGCCGCCCA RPE_3099 3464050 - 3464598 + | NosL family protein TERM 3183 3465360 - 3465375 + G 73 -6 -4.37711 | ATCGCGCCGTGGCGA CCAGCG CAGG CGCCGG TTTTCGCTTTGATCC RPE_3100 3464612 - 3465607 + | ApbE family lipoprotein TERM 3184 3466044 - 3466025 - f 71 -13.6 -2.63102 | opp_overlap 3466022 3466021, overlap 3466014 3466035 ACCAGCGCGACACGA CGCGAACG TAGC CGTTCGCG GCAATTCTTCCAACG RPE_3101 3466070 - 3468352 + | formate acetyltransferase RPE_3102 3468339 - 3469148 + | pyruvate formate-lyase activating enzyme RPE_3103 3469791 - 3469216 - | phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN RPE_3104 3470945 - 3469788 - | phosphonate metabolism protein PhnM RPE_3105 3471686 - 3470976 - | phosphonate C-P lyase system, PhnL TERM 3185 3471041 - 3471077 + g 83 -9.4 -4.30987 | gap 2, overlap 3471044 GCGCGCGCACCTCGT CGTCGTGGACGATGGCGA TCA TCGCCA-CGCCCTCG-CG TTTCTTCTCGGCGAT phnK 3472483 - 3471683 - | phosphonates transport ATP-binding protein TERM 3186 3471857 - 3471809 - G 73 -13.1 -3.28924 | gap 1, opp_overlap 3471842 3471846 CACCCGGTGCGACAA CAGCCGCGCCACCGCGA-GATC GTGGGT GACCACCACGGCGGCGAGGCCG AGTTCGTTGACCAGG TERM 3187 3472234 - 3472208 - G 77 -7.8 -4.32857 | overlap 3472204 3472209 GGTGCGAAACAGAAA CCGCCGCTCGGC CTC GCCTAGCGCCGC GAGATCGCGCAGCAC RPE_3107 3473357 - 3472476 - | phosphonate metabolism PhnJ RPE_3108 3474460 - 3473354 - | phosphonate metabolism phnH 3475071 - 3474460 - | carbon-phosphorus lyase complex subunit RPE_3110 3475532 - 3475074 - | phosphonate metabolism PhnG RPE_3111 3475645 - 3476373 + | GntR family transcriptional regulator RPE_3112 3477392 - 3476526 - | phosphonate ABC transporter inner membrane protein RPE_3113 3478270 - 3477389 - | phosphonate ABC transporter inner membrane protein TERM 3188 3478312 - 3478290 - R 100 -22 -3.05384 | GTTCCCGGTATGGAA CGGGCGGCCG CGA CGGCCGCCCG TCTCAGTCAATCCCG RPE_3114 3479241 - 3478333 - | phosphonate ABC transporter periplasmic phosphonate-binding protein RPE_3115 3480265 - 3479387 - | phosphonate ABC transporter ATP-binding RPE_3116 3480364 - 3481032 + | putative acetyltransferase (virginiamycin, streptogramin A, chloramphenicol) TERM 3189 3481942 - 3481958 + G 72 -11.5 -3.59979 | ACTATTACTATCCGG CGCCGCT GCT GGCGGCG TTTCGCCTCGCCGAC RPE_3117 3481029 - 3482222 + | phosphonate metabolism protein PhnM RPE_3118 3482243 - 3482947 + | hypothetical protein minE 3483250 - 3482990 - | cell division topological specificity factor MinE RPE_3120 3484062 - 3483247 - | septum site-determining protein MinD minC 3484773 - 3484081 - | septum formation inhibitor RPE_3122 3486662 - 3485034 - | cobyric acid synthase RPE_3123 3487450 - 3486677 - | cobalamin-5-phosphate synthase CobS TERM 3190 3487583 - 3487566 - H 76 -8.3 -4.17023 | opp_overlap 3487576 GGAATCAGTTGAAAA CCGCCGC AACT GCGGCTG GCGCGCTATTCTGGA RPE_3125 3488263 - 3488589 + | hypothetical protein RPE_3126 3489488 - 3488655 - | periplasmic binding protein RPE_3127 3490288 - 3489506 - | ABC transporter related RPE_3128 3491304 - 3490285 - | transport system permease protein RPE_3129 3492426 - 3491896 - | MxaD protein, putative RPE_3130 3493413 - 3492439 - | von Willebrand factor, type A TERM 3191 3493350 - 3493329 - G 73 -12.9 -3.25823 | overlap 3493330 GCTGGCGCAGACCAA GTCGCGGCG TCAG CGCCGCGGC CAGCGCCGCGATCAG RPE_3131 3494027 - 3493410 - | hypothetical protein TERM 3192 3493804 - 3493786 - G 74 -5.2 -4.51097 | overlap 3493787 3493789 3493790 TGAACGATGAGAAAA TGATGCCG CGC CAGCAGCA GCGCATCTGGCGCCG TERM 3193 3493935 - 3493908 - G 100 -20.6 -3.14344 | CATCGCCGCGATCAA GGTCGCCGCGCC AGCC AGCGCGGCGACC AGCACGAACAGCAGG RPE_3132 3495022 - 3494024 - | von Willebrand factor, type A TERM 3194 3494658 - 3494623 - G 93 -11.3 -4.38712 | gap 1, opp_overlap 3494626 GCGAGGTCGAGAAAA TCGCG-ACACCAAACA TGTCG TGTTCGGCGTTCGCGA CGAACGATCTGAGGA TERM 3195 3494896 - 3494883 - G 74 -5.3 -4.45399 | AGACGAAGACCAAAA TCGAT CGCC ATCGA CAGCGGATCGCCCGT RPE_3133 3495924 - 3495022 - | MxaA protein, putative RPE_3134 3496802 - 3495921 - | hypothetical protein TERM 3196 3496167 - 3496128 - G 78 -6.2 -4.59773 | opp_overlap 3496158, overlap 3496130 CTCGATCGGCAAAAA GCCCCACCGCGGCAGGCT CGCC AGCTCGCCGCTGTCGATC AGCTGGATTGGAAGG RPE_3135 3497866 - 3496814 - | ATPase TERM 3197 3497917 - 3497895 - R 100 -9.1 -5.7946 | overlap 3497898 CTCGCAACAAAAAAA GAAGGGGCG AACCG CGCCCCTTG GGAGAGCTCAAAGAA TERM 3198 3497914 - 3497898 - R 100 -10.8 -4.96435 | overlap 3497895 GCAACAAAAAAAGAA GGGGCG AACCG CGCCCC TTGGGAGAGCTCAAA RPE_3136 3498265 - 3497969 - | methanol dehydrogenase, beta subunit RPE_3137 3498921 - 3498259 - | cytochrome c, class I RPE_3138 3499864 - 3498926 - | extracellular solute-binding protein TERM 3199 3499987 - 3499956 - R 100 -21.6 -2.87564 | opp_overlap 3499947 CGATCGGTGGATACA GCCCGCGGCGGTCG GCTC CGACCGCCGCGAAC CGGACGCGATCAATT RPE_3139 3501871 - 3499997 - | Pyrrolo-quinoline quinone TERM 3200 3501548 - 3501532 - G 74 -12.3 -3.53012 | opp_overlap 3501516 GTTTGTGCTGCCAAA GGATCCG CCC CGGATCC TTGAGGTCGAGCGCA RPE_3140 3502209 - 3502718 + | hypothetical protein TERM 3201 3503651 - 3503604 - g 77 -11.3 -3.76048 | gap 2, overlap 3503599 3503605 TCGGAATCAAGACAA CCGCCGCCGCGATCGAGGCGCGG ATGT CC-CGCGTCGATCACGCCGA-GG CGGCGGAAATCGGCC RPE_3141 3502724 - 3504196 + | putative signal transduction histidine kinase RPE_3142 3504193 - 3504849 + | two component LuxR family transcriptional regulator RPE_3143 3505547 - 3505026 - | ferric uptake regulator family protein RPE_3144 3506627 - 3505773 - | TonB family protein TERM 3202 3506109 - 3506158 + g 80 -14.1 -3.75461 | overlap 3506114 TTGGTTCGGCGCCAC GCGTTCGGCTTGCGGCGCCGC ACTGGTCC GCGGCGCCGGCAGCTGTTCGC TTTGATGCAGCTTTG TERM 3203 3506114 - 3506153 + g 75 -14.2 -3.30701 | overlap 3506109 TCGGCGCCACGCGTT CGGCTTGCGGCGCCGC ACTGGTCC GCGGCGCCGGCAGCTG TTCGCTTTGATGCAG RPE_3145 3507064 - 3506624 - | biopolymer transport protein ExbD/TolR RPE_3146 3507856 - 3507068 - | MotA/TolQ/ExbB proton channel TERM 3204 3507371 - 3507356 - G 81 -11.8 -3.89501 | opp_overlap 3507349 GAACAGGCCGACAAA CGGCGC CACC GCGCCG ATCGAGGCCAGCACG RPE_3147 3508364 - 3507849 - | hypothetical protein RPE_3148 3508788 - 3508402 - | antibiotic biosynthesis monooxygenase RPE_3149 3511203 - 3508864 - | TonB-dependent heme/hemoglobin receptor family protein TERM 3205 3510913 - 3510940 + g 72 -5.4 -4.30809 | overlap 3510913 CTCCATCGTCACCAC GCTGACCGGCGC CAGC GCGTCGATCGCC TTTTCCTCGGTCTTG TERM 3206 3511036 - 3511065 + g 74 -12.1 -3.55622 | gap 1 GAGCGGCGAAGTCGC CACAGGCG-GCGGC ACG GCCGCGCGCTTGCG TTTGGCCGGCTTCGG RPE_3150 3512072 - 3511398 - | NAD-dependent epimerase/dehydratase TERM 3207 3511974 - 3511924 - G 79 -7.5 -4.56775 | gap 2, overlap 3511928 ACGGCGTCCGAAAAA TCCACCGCGGTCCAGCCATCAGCCG TGG CCGCCG-CGGCCA-ACCGCTGCGGA TCGCGCCCGCAGGCA RPE_3151 3513532 - 3512120 - | coproporphyrinogen III oxidase TERM 3208 3513420 - 3513383 - G 75 -6.9 -4.4017 | gap 1, overlap 3513384 CCAAGGTGGAGAAAA TTCGCG-GCCGCTGAAGG CCT CCGTCAGCGGATCGCAAC CCGGCCTGACCAGGA RPE_3152 3513866 - 3514072 + | hypothetical protein RPE_3153 3514117 - 3515052 + | periplasmic binding protein RPE_3154 3515049 - 3516143 + | transport system permease protein RPE_3155 3516140 - 3516952 + | hemin importer ATP-binding subunit RPE_3156 3516949 - 3517239 + | hypothetical protein RPE_3157 3517236 - 3517568 + | hypothetical protein RPE_3158 3517840 - 3517565 - | hypothetical protein RPE_3159 3518162 - 3518494 + | hypothetical protein RPE_3160 3518592 - 3519407 + | hypothetical protein RPE_3161 3521923 - 3519566 - | hypothetical protein TERM 3209 3521102 - 3521078 - G 74 -7.7 -4.1721 | overlap 3521083 ACCGAGATCGGAAAA CAGCAGCGCCG GCA CCACGCCGCCG AGCAGGCCGCCATTG RPE_3162 3523309 - 3522116 - | acetate kinase RPE_3163 3524752 - 3523319 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase TERM 3210 3524192 - 3524171 - G 71 -12.3 -3.28712 | opp_overlap 3524174, overlap 3524174 GCGGCCGGCCGACAA CAACGCGCC GCCA AGCGCGTTG TGATCGTCCGGACAG RPE_3164 3525553 - 3524783 - | short-chain dehydrogenase/reductase SDR TERM 3211 3525175 - 3525152 - G 76 -14.6 -3.14931 | gap 1 GCCATCGGTCATCAA CGGCTCGGCGC TAC GCGCC-AGCCG GATGAACGAGTGCAC RPE_3165 3526244 - 3525702 - | GCN5-related N-acetyltransferase RPE_3166 3528631 - 3526274 - | ornithine decarboxylase RPE_3167 3528955 - 3528680 - | hypothetical protein TERM 3212 3530274 - 3530228 - gR 84 -16.8 -3.0752 | gap 3, opp_overlap 3530233 3530243 GACACCATCGCAATA CCACCGGCTACGGAAGCACGGCC CGTC GGCCGCGCTTCCGT-G-CG-TGG TTCAGCTCAGCGTCG TERM 3213 3530233 - 3530271 + Gr 78 -15.3 -2.73364 | gap 1, opp_overlap 3530228, overlap 3530243 CATCGCAATACCACC GGCTACGGAAGCACGGCC CGTC GGCCGCGCTTCCGT-GCG TGGTTCAGCTCAGCG TERM 3214 3530277 - 3530299 + Gr 70 -7.6 -4.07568 | CTTCCGTGCGTGGTT CAGCTCAGCG TCG CGCGGATCTG TTTTGCGGCGGCCAC RPE_3169 3532648 - 3530276 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase RPE_3168 3529025 - 3530407 + | hypothetical protein TERM 3215 3532438 - 3532421 - GT 73 -8.5 -4.08349 | opp_overlap 3532418 ATCGTAAAAAGAGAA GTCATTC GATG GAATGAC GCCGACGCCGAGTGA RPE_3170 3533695 - 3533075 - | hypothetical protein RPE_3171 3534445 - 3533717 - | methylisocitrate lyase RPE_3173 3535186 - 3534737 - | thioesterase superfamily protein TERM 3216 3535750 - 3535765 + G 93 -4.6 -5.36441 | TGCCTTCGACACCAT TCGAGG AAGT CCGCGA TTTTTTCTATGCGCA TERM 3217 3536274 - 3536285 + G 72 -7.2 -4.21772 | opp_overlap 3536271 CAGCGTCACAATGCC CGGG GTGT CCCG TTCTTCTTTGTTCGC RPE_3174 3535317 - 3536735 + | XRE family transcriptional regulator RPE_3175 3537410 - 3536751 - | anaerobic ribonucleoside-triphosphate reductase activating protein RPE_3176 3539616 - 3537595 - | anaerobic ribonucleoside triphosphate reductase RPE_3177 3540892 - 3540221 - | ribonucleotide reductase RPE_3178 3541078 - 3540920 - | glycine/serine hydroxymethyltransferase RPE_3179 3541737 - 3541928 + | hypothetical protein TERM 3218 3541941 - 3541951 + F 74 -2.4 -4.82901 | opp_overlap 3541941, overlap 3541928 TAGCGGCACCTAAAT GACG CGC CGCC TTTTTCTGCGCAACC RPE_3180 3542191 - 3542976 + | NLPA lipoprotein TERM 3219 3543013 - 3543033 + F 85 -15.4 -3.39895 | ACTCTCATCGACCGG CCGGCCGC CATTC GCGGCCGG TTGCTTCATCCAGGA TERM 3220 3543526 - 3543558 + G 81 -16.3 -3.14132 | TCGGCGGCCCCTGCG TGCTCGGCGCGCAGA GGC TCGGCGCGTTGAGCA TTCATGCGGGCACCC RPE_3181 3543057 - 3544394 + | phenylacetate--CoA ligase TERM 3221 3544485 - 3544440 - T 74 -14.9 -2.55544 | gap 1, opp_overlap 3544439 3544444, overlap 3544436 3544444 3544448 CGAGGAGCGAAGCGA CGAAGCAATCCATGCGCCCC GCGTACT GGAGCCC-TGGATTGCTTCG CTTCGCTCGCAATGA TERM 3222 3544571 - 3544540 - T 74 -10.2 -3.68908 | gap 1, overlap 3544542 AAACAGTCATTGAAA TATCGATGCCCGCGA CAA TCGCGGGCAT-GACG ACTCACTGTGAATGA TERM 3223 3544569 - 3544542 - T 83 -15 -3.41836 | gap 1, overlap 3544540 ACAGTCATTGAAATA TCGATGCCCGCGA CAA TCGCGGGCAT-GA CGACTCACTGTGAAT RPE_3182 3545368 - 3544595 - | YaeC family lipoprotein TERM 3224 3544892 - 3544930 + g 88 -16.7 -3.67976 | opp_overlap 3544899 CTTCTTCGGATTGTC GACGATATCGGCGACGC TCGCC GCGACGCCGATGCCGTC TTTCAGCTTGATCGC TERM 3225 3545447 - 3545398 - R 81 -4.1 -4.97158 | gap 1, overlap 3545399 3545405 3545406 TCAGATCAAAGAAAA TCAGGAAC-GGCGGGTGCGCCG ATCGAGG CGGCGCGCCAGCGTGTCGCCGA GCGTCTGCACGCCCT RPE_3183 3546063 - 3545398 - | binding-protein-dependent transport systems inner membrane component RPE_3184 3547168 - 3546053 - | ABC transporter related TERM 3226 3546390 - 3546366 - G 73 -11.3 -3.74872 | ACTGAGCTGACGAAA CGTCGCGTCAC TTC GTGGCGCGGCG TGGCGAACACGTCGA TERM 3227 3546712 - 3546725 + g 72 -5.2 -4.37198 | overlap 3546705 CGACCATGTCGAGCA GCGG CAGCAC CCGC TTTTCGATTTCGGTT TERM 3228 3547278 - 3547252 - R 75 -4.5 -4.68512 | GGAGAATAAAAACAA CGT-CGATCGTCT TTC AGACG-CCGCACG AAGAATGTTTTCATA RPE_3185 3548289 - 3547339 - | Serine O-acetyltransferase RPE_3186 3550282 - 3548294 - | SufS subfamily cysteine desulfurase TERM 3229 3548448 - 3548479 + g 74 -12.3 -3.55548 | gap 1 GCGCAATGATGTCCA GCGCGC-ACCGCGA TGCCT TCGCGGTCGAGCGC TTTGCCGACATCTTC TERM 3230 3548899 - 3548873 - G 78 -15.2 -3.34233 | GGAGAACGCGTAGAA GTCGACGTCCAG GGC CTGCACGTCGAC CGGCATGTGGCAGAC TERM 3231 3549976 - 3549937 - G 70 -12 -3.38522 | gap 1, opp_overlap 3549953, overlap 3549935 3549938 GATCGAGCGCAAAGA TCGGCCCCGACGG-GCGCG CGG CGCCCACCGTCGGGATCGG CGAAGCCGCGCCGGG TERM 3232 3549975 - 3549938 - G 74 -15.5 -2.62792 | gap 1, opp_overlap 3549953, overlap 3549937 3549935 ATCGAGCGCAAAGAT CGGCCCCGACGG-GCGCG CGG CGCCCACCGTCGGGATCG GCGAAGCCGCGCCGG RPE_3187 3551213 - 3550269 - | hypothetical protein RPE_3188 3552810 - 3551557 - | oxidoreductase/nitrogenase, component 1 RPE_3189 3554168 - 3552810 - | oxidoreductase/nitrogenase, component 1 RPE_3190 3555045 - 3554170 - | nitrogenase TERM 3233 3554746 - 3554727 - G 78 -15 -3.29471 | opp_overlap 3554714 CGTGCAGCAGATCAA CCGCGGCA TTGA TGCCGCGG CCGGCACAGCCGACG RPE_3191 3556524 - 3555091 - | radical SAM domain-containing protein TERM 3234 3555629 - 3555603 - G 73 -13.6 -3.25823 | overlap 3555604 GGTTGCGCAGATCAA GCGGCGCCGCGA TGG TCGCGGTGCCGT TGAAATCCTCGCGCC TERM 3235 3555628 - 3555604 - G 80 -17.1 -2.55351 | overlap 3555603 GTTGCGCAGATCAAG CGGCGCCGCGA TGG TCGCGGTGCCG TTGAAATCCTCGCGC RPE_3192 3556688 - 3557644 + | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein TERM 3236 3557669 - 3557693 + F 79 -13.5 -3.4678 | opp_overlap 3557665 CCCGCTGAAGAGCGA CGCCCACCGAT TTC GTCGGCGGGCG TTCTCGTGTCGGACT RPE_3193 3557975 - 3559150 + | alkanesulfonate monooxygenase RPE_3194 3559147 - 3559953 + | binding-protein-dependent transport systems inner membrane component RPE_3195 3559963 - 3560808 + | ABC transporter related TERM 3237 3561029 - 3561044 + G 72 -11.8 -3.60475 | overlap 3561016 GGCCTGGCCGCTGAT CGCGCG TCAT CGCGCG TTTGCCGTCAACGTT RPE_3196 3560817 - 3561389 + | flavin reductase domain-containing protein RPE_3197 3562416 - 3561439 - | NAD-dependent epimerase/dehydratase TERM 3238 3561902 - 3561882 - G 75 -9 -4.07568 | opp_overlap 3561894 CGGTCTCGCCCAAAA TGGTGCCG ATCCG CAGCACCA CCTGCTTGAGTTCGG RPE_3198 3563327 - 3562413 - | bile acid:sodium symporter TERM 3239 3562821 - 3562763 - G 70 -11.8 -3.46144 | gap 4, overlap 3562761 ACAGCAGGAAGAACA CCAGCGAT--CCGAGCTTCGCCG-GC-CGC TGG GCGCGCGCGGTGAAGCGCGGCCACCGCCGG GCGACGAACAGCCCC RPE_3199 3563670 - 3563338 - | acetolactate synthase large subunit RPE_3200 3564263 - 3563667 - | thiamine pyrophosphate binding domain-containing protein RPE_3201 3566116 - 3564347 - | sulfoacetaldehyde acetyltransferase RPE_3202 3567103 - 3566183 - | succinyl-CoA synthetase, alpha subunit RPE_3203 3568227 - 3567100 - | succinate--CoA ligase (ADP-forming) RPE_3204 3569680 - 3568244 - | hypothetical protein TERM 3240 3568801 - 3568823 + g 70 -6.2 -4.2558 | overlap 3568786 3568792 3568795 3568802 GCTTGCCGTTGCGCC ACAGCGTGTT CTC GACGCGCTGC TTTTCCTCAGGACTG TERM 3241 3569249 - 3569288 + g 70 -10.8 -3.61715 | GAGCGGCGACGGCGC GATGATGATGGCGTTG CGGCCCTT CAGCGCCATCATCGCC TTGTTGACCGGCGTC TERM 3242 3570400 - 3570381 - g 70 -10 -3.75817 | gap 1, overlap 3570379 GTCGCAGAAGAAAGA GCCT-CGCC ATC GGCGCAGGC GATCCTGGTCGGGGA RPE_3205 3570045 - 3571013 + | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein TERM 3243 3571274 - 3571258 - T 100 -15.1 -4.71061 | ATGGACAGCGAAAAA GCCCGCC AGA GGCGGGC CGCGCACATCCTGTT TERM 3244 3571791 - 3571821 + T 81 -10.5 -4.15565 | CACTCAAGTGTTTTT GGCCCAATTAGAT GGTTG ATCTGACTGGGCC TTTTCCCGTCGTCGG RPE_3206 3572103 - 3571861 - | hypothetical protein RPE_3207 3572960 - 3572229 - | ABC transporter related RPE_3208 3574711 - 3572957 - | ABC transporter related TERM 3245 3573483 - 3573464 - G 70 -10.6 -3.54424 | opp_overlap 3573457 CCGGATGTGCTGAAA GGTGCGGC CGAT GCCGCGCC TTGCGATCTGGGTTT RPE_3209 3575763 - 3574708 - | inner-membrane translocator TERM 3246 3574994 - 3574956 - G 71 -13.7 -2.81471 | overlap 3574946 3574977 CAGAATCGTAGTACA GCGTCGCCACCGGCCCA ATCAG CAGGCCGGAGACGCCGC CCAGCACCGAGGCCA RPE_3210 3576075 - 3575773 - | hypothetical protein RPE_3211 3576558 - 3577712 + | extracellular ligand-binding receptor TERM 3247 3577726 - 3577750 + T 90 -15.7 -3.79071 | opp_overlap 3577739 AGGCTGAACGCCGAC CGGCGCCGC ACAAGTC GCGGCGCCG TTTCGCTCTTGTGAG RPE_3212 3578970 - 3577780 - | L-carnitine dehydratase/bile acid-inducible protein F RPE_3213 3581351 - 3578967 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TERM 3248 3579657 - 3579636 - G 74 -12.3 -3.53012 | opp_overlap 3579635 3579633 3579636, overlap 3579637 CGCCGCGCCGCCAAA CTTGGCGGC CGCC GCCGCCAAA ATCTTATCCTTGGCC TERM 3249 3581323 - 3581333 + g 72 -4.6 -4.57341 | overlap 3581305 3581327 TTGCCGATCAGCGTG TCGG CGG CCGG TTTTTCCCGGACGTT RPE_3214 3581833 - 3581363 - | 2Fe-2S iron-sulfur cluster binding domain-containing protein RPE_3215 3582683 - 3581817 - | molybdopterin dehydrogenase, FAD-binding protein RPE_3216 3584380 - 3582683 - | 5-oxoprolinase (ATP-hydrolyzing) RPE_3217 3586506 - 3584377 - | 5-oxoprolinase (ATP-hydrolyzing) RPE_3218 3588038 - 3586503 - | AMP-dependent synthetase and ligase TERM 3250 3587093 - 3587036 - G 93 -19.8 -2.73364 | CGTCGAGGTCAACGA TCCGCAGATCGCAATGCAGCGCCGGC AGGCCG GCCGACCCCGCCTTGCGCTCGGCGGA GTCGACGCGCTGATA RPE_3219 3589251 - 3588043 - | thiolase RPE_3220 3589936 - 3589235 - | GntR family transcriptional regulator TERM 3251 3590756 - 3590769 + G 75 -9.5 -4.07568 | opp_overlap 3590740 3590755 3590754 ACCCATTTTGAAATG CGGCG TGAG CGCCG TTTTCCGCAGGCCCG RPE_3221 3590018 - 3590818 + | hypothetical protein RPE_3222 3590829 - 3591965 + | butyryl-CoA dehydrogenase RPE_3223 3591958 - 3592353 + | methylmalonyl-CoA mutase-like protein TERM 3252 3592871 - 3592854 - g 74 -12.7 -3.54741 | opp_overlap 3592848 TACGACCTCGCCAAA CTGCGCG GCAC CGCGCAG AACGACATTTTGAAA RPE_3224 3592350 - 3593981 + | methylmalonyl-CoA mutase, large subunit RPE_3225 3593998 - 3596013 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein RPE_3226 3596533 - 3596138 - | endoribonuclease L-PSP TERM 3253 3596212 - 3596244 + g 88 -9.8 -4.4017 | gap 1 CGGCGACCTGTACCA GCGACATCGCCG-GG TACA CCGCGCCGATGACGC TTTTGTACACCTTGC RPE_3227 3598206 - 3596542 - | AMP-dependent synthetase and ligase TERM 3254 3598120 - 3598102 - G 74 -2.4 -4.72272 | gap 1, overlap 3598103 3598104 CCGGTCGAGCAAAAA GTCCGGC TGCAGC GCC-GAC GGTGGAAGATTGTCG TERM 3255 3598146 - 3598183 + g 70 -6.1 -4.1891 | gap 1, opp_overlap 3598146 3598148 TGTCGCGTGCGAAAT GATCGACGTGGCCGCTCG GAC CGAGCGGGC-TGGCGGGC TTTCTGTTCACAACC RPE_3228 3599039 - 3598257 - | short-chain dehydrogenase/reductase SDR RPE_3229 3601357 - 3599036 - | salicylyl-CoA 5-hydroxylase TERM 3256 3600030 - 3599998 - G 72 -14.2 -3.02144 | TCATCTCGCCGAAGA TCAGCG-CCGCGCCGC CGA GCG-CGCGGGCGCCGA AATGCACCAGATGGA RPE_3230 3601473 - 3602000 + | MarR family transcriptional regulator RPE_3231 3602630 - 3602226 - | BLUF domain-containing protein RPE_3232 3602861 - 3603064 + | hypothetical protein RPE_3233 3603061 - 3603336 + | AbrB family transcriptional regulator RPE_3234 3603323 - 3603712 + | PilT protein RPE_3235 3604768 - 3603791 - | hypothetical protein TERM 3257 3604823 - 3604851 + H 100 -7.4 -5.29716 | ACTCAATTGTTATTT GCCCAGCGAGAT GGTTG ATCTGACTGGGC TTTTTGTTGTCTTCA RPE_3236 3605465 - 3605707 + | prevent-host-death family protein RPE_3238 3620032 - 3606077 - | filamentous haemagglutinin outer membrane protein TERM 3258 3610454 - 3610427 - G 70 -11.2 -3.54424 | gap 1 GGTCACCGCTGTAAA CGAC-GCGGAGGC GCT GCCGCCGCCGCCG CTCAGAGCCACCGTC TERM 3259 3612264 - 3612228 - G 71 -13.7 -2.80935 | AGCGGATCGAGCAGA CCTTGCGGGTCGATGCC GGC GGCATTGACCTGCAACG CGTTGGCATCGACCT TERM 3260 3613256 - 3613283 + g 73 -12.7 -3.36327 | overlap 3613259 GACGCGGAAGCTCGC GGTCGGCGCCA GGATGA TGGCGCCGGTC TTCTGGGTCGCCTGC TERM 3261 3613768 - 3613784 + g 75 -4.3 -4.59773 | overlap 3613748 CGGCCTTGACCGTGA CGACGCC GCT GCCGTTG TTTTTCGGGGTGACG TERM 3262 3616990 - 3617012 + g 73 -4 -4.66833 | overlap 3616979 3616991 TCCCCGTTGCCAGCC GGATGCTGCC GGA GGCATCGTCG TTTTTCGGATTCCCG TERM 3263 3617962 - 3617947 - G 72 -11.8 -3.55444 | TCTGCATGCCGTAAA GGCGCC CGTC GGCGCC AAGCAGCCGCGTCAC TERM 3264 3618616 - 3618648 + g 77 -15.5 -3.07043 | overlap 3618611 3618637 GGGTGAAGCTCTGCA CGCTGCCGTTTGACG TCC CGCCGATCGGCAGCG TGTTGCCGTCGTCGA TERM 3265 3620056 - 3620038 - R 74 -5.8 -4.42806 | opp_overlap 3620037 3620042, overlap 3620042 GTATCCCCAAAGAAA CCCAGGCG CCG CGACAGGG CTCTGTCGCCGAACG RPE_3239 3621178 - 3620153 - | putative FecR RPE_3240 3621830 - 3621189 - | ECF subfamily RNA polymerase sigma-24 factor RPE_3241 3622476 - 3621817 - | hypothetical protein RPE_3242 3622785 - 3622952 + | putative transposase RPE_3243 3623568 - 3623089 - | hypothetical protein RPE_3244 3624650 - 3624015 - | hypothetical protein RPE_3245 3624966 - 3625265 + | hypothetical protein TERM 3266 3625570 - 3625557 - g 70 -5.9 -4.27316 | TGGCTGAAGGCAAAA CGGCC GGCA AGCCG CGAAGCGGGCTCGAC TERM 3267 3625667 - 3625645 - g 70 -3.5 -4.50058 | gap 2, overlap 3625639 3625648 GACCGATAACGAAAA GGA-CTTC-GC CGG GCTGAAGATCC TCAATCCAATGCGCG RPE_3246 3625262 - 3625693 + | PilT domain-containing protein TERM 3268 3625727 - 3625713 - f 76 -5.7 -4.58395 | opp_overlap 3625726 GCGACGGGGCAAAAA TGGTC AGGGA GACCA CGTAGGATGGGTCGA TERM 3269 3626021 - 3626007 - g 72 -5.8 -4.3898 | ATCACGTCGAGAAAA TCATTT CCG AAATGA AGCGGTTCGACGGAC TERM 3270 3626302 - 3626263 - g 72 -13.4 -3.16564 | opp_overlap 3626264 CTGCGATCGCATCAA GGCGCGGATCGCGGCCGA ACCT TCGGCCGAGGTCAGCGCT ATGCTCGGACTCTCG TERM 3271 3626264 - 3626301 + G 87 -19.1 -2.79501 | opp_overlap 3626263 TGCGATCGCATCAAG GCGCGGATCGCGGCCGA ACCT TCGGCCGAGGTCAGCGC TATGCTCGGACTCTC RPE_3247 3625817 - 3627022 + | hypothetical protein TERM 3272 3627658 - 3627696 + F 74 -10.3 -3.7941 | gap 1, opp_overlap 3627655 ACGTCGTTAAATGCC TCACGCCTGAGCCCCTCT GAGG AAAGTGGCTCGGGCG-GA TTGTTGTGGCCGATG RPE_3248 3627702 - 3628139 + | hypothetical protein RPE_3249 3630235 - 3628172 - | hypothetical protein TERM 3273 3628832 - 3628844 + g 75 -3.3 -4.74103 | opp_overlap 3628832 ATAGAACTCATTGAA GCCGT CCG ACGAC TTTTTCCATTCCGCG TERM 3274 3629229 - 3629206 - G 89 -16.8 -3.59262 | opp_overlap 3629209 TGGCATATTCGGAAA TGAGCGGCAC TATG GTGCCGCTCA ATTCGCAATCGATCA RPE_3250 3631207 - 3630236 - | hypothetical protein RPE_3251 3633875 - 3631200 - | endonuclease TERM 3275 3631951 - 3631963 + g 71 -3.3 -4.63218 | CTAACGGTCACCTGC TGCCC GGA GCGCA TTTTGTTAGCGGCAG RPE_3252 3635350 - 3633872 - | hypothetical protein RPE_3253 3635772 - 3635350 - | DNA mismatch endonuclease vsr RPE_3254 3637538 - 3635769 - | DNA-cytosine methyltransferase TERM 3276 3637279 - 3637257 - G 71 -9 -3.76492 | CCGAAGCGCAGCAAA GCCCTCGCCG AGA CCGCCAGGGC CGGCGAACACATCCA RPE_3255 3637778 - 3638605 + | hypothetical protein RPE_3256 3638602 - 3639462 + | hypothetical protein RPE_3257 3639677 - 3639459 - | conjugal transfer TraD family protein RPE_3258 3640020 - 3639679 - | hypothetical protein RPE_3259 3640081 - 3643197 + | MobA/MobL protein RPE_3260 3643328 - 3643558 + | phage transcriptional regulator, AlpA RPE_3261 3644909 - 3643560 - | phage integrase family protein guaA 3646816 - 3645131 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 3277 3645733 - 3645719 - G 74 -5.6 -4.56597 | opp_overlap 3645720, overlap 3645720 GCCCTGCGCCAAAAA GTCGGC GCC GCCGAT CATCTTGGCCTCGCC TERM 3278 3646831 - 3646874 + r 76 -8.8 -4.16943 | overlap 3646824 3646828 3646862 3646864 TGGGGGTCCGCGCGG CCGCGTTCGTCTCG-GGGGC CGATTT GCCTCACGCGGCGG-CGCGG TTTTCACCTCTCCCC TERM 3279 3647041 - 3647001 - R 70 -13.2 -2.87564 | gap 1 TGAGCGGCGCAGAGA TTCCGGGTTCGTCCGCCGC TCGC GCGGCGTCCGC-CCCGGAA TGACGCCGCAAAATT TERM 3280 3647314 - 3647275 - R 72 -4.1 -4.62069 | overlap 3647276 GTCGGACGGCAAAAA CGTGTGGTCTCGATGCC GCGCGT GGCATCAAGCCCCTCCG GAGAGCCGGCCTCAA TERM 3281 3647490 - 3647533 + r 70 -7.2 -4.07568 | gap 1, opp_overlap 3647464 3647493, overlap 3647517 TCTACCCATTGCACA CGAGGCCGCG-GGTGCATCGG CAC CCGGCGTTCCGCACGCCCTCG TTTTGGAAGAGGGCG TERM 3282 3647586 - 3647565 - R 100 -13.7 -4.25848 | gap 1 AACGTTTTAGCAAAA CCCG-GGCGC AAC GCGCCGCGGG AACGAGCAAGTGCGC RPE_3263 3649131 - 3647827 - | Fmu (Sun) domain-containing protein TERM 3283 3647887 - 3647863 - G 75 -3.4 -4.72986 | gap 1, overlap 3647864 CACGCTGACGAAAAA CCCGTCGGTGC CGGT GCGGCG-CGGG GTCAGCAACAGGCCC TERM 3284 3648052 - 3648010 - G 70 -3.9 -4.56597 | gap 1 GTGGCGCGCCAAAAA CTGC-CGGATCTGGCCGTTG TTCT CGCCGGACAGCACCGAGCAG GTGACATAGGCGATC RPE_3264 3649597 - 3649175 - | hypothetical protein RPE_3266 3651496 - 3650462 - | alcohol dehydrogenase TERM 3285 3650640 - 3650622 - G 88 -10.2 -4.37886 | GTATCGCGCAGAAAA TCGCCGTG CAT CGCGGCGA AGTCACTGACAATGA TERM 3286 3651572 - 3651600 + r 86 -13.7 -3.83205 | GGCTATCCGCTGGCG CGTGCACTCGCCG CGG CGGCGTGCGCGCG TTTGGTGTACCAACT RPE_3267 3652125 - 3651559 - | hypothetical protein TERM 3287 3652155 - 3652178 + r 75 -11.6 -3.56092 | overlap 3652156 GAAGCAATTTTGCGC GGCGTCGGCC CCCA GGCCGGCGCG TTTCCGCGCTGATAA TERM 3288 3652156 - 3652177 + r 78 -15.1 -2.73441 | overlap 3652155 AAGCAATTTTGCGCG GCGTCGGCC CCCA GGCCGGCGC GTTTCCGCGCTGATA RPE_3268 3653809 - 3652316 - | inositol-5-monophosphate dehydrogenase TERM 3289 3653472 - 3653448 - G 78 -6.4 -4.59853 | gap 1 GGAATGCCGGAAAAA CCGTGGTCGCT CATC AGCG-CCAGGG CGTCGCCCAACAGCG RPE_3269 3654258 - 3654010 - | hypothetical protein TERM 3290 3655327 - 3655297 - H 71 -14 -2.53263 | overlap 3655302 TTGACGTTCAAGTCA GGGAAGCGGCAACC CGA GGTTGCCACTCCTC CGCAGACCTTGCTGA TERM 3291 3655322 - 3655302 - H 71 -13.3 -3.09933 | overlap 3655297 GTTCAAGTCAGGGAA GCGGCAACC CGA GGTTGCCAC TCCTCCGCAGACCTT TERM 3292 3656360 - 3656337 - g 79 -8.2 -4.41348 | opp_overlap 3656339, overlap 3656339 TTGTGTTTAAAGAAA TCTTGGGTTC GCGT GAACCCAATA TCTTCACCGACGATG RPE_3270 3655805 - 3656734 + | hypothetical protein TERM 3293 3657742 - 3657754 + G 77 -3.3 -4.91109 | ATCACCACCTATTTC TCCTG GCA CTGGA TTTTTCTGATCAACA TERM 3294 3657998 - 3658022 + G 73 -3.5 -4.68593 | gap 1, overlap 3657999 3658001 ACGTGCTGCATGCGC GCC-GCACCG CTTCGC CGGTGCTGGA TTTTTCGCTGCTGAA TERM 3295 3658054 - 3658071 + G 79 -2.5 -5.07486 | opp_overlap 3658039, overlap 3658028 3658027 CTGGCGACGCTGCGC GCCAGCG TGAT CGGCGGC TTTTTGTTCCGGCTC RPE_3271 3657271 - 3658746 + | EmrB/QacA family drug resistance transporter RPE_3272 3659585 - 3658878 - | ribosomal RNA methyltransferase RrmJ/FtsJ RPE_3273 3660646 - 3659654 - | Ppx/GppA phosphatase RPE_3274 3661448 - 3660987 - | hypothetical protein RPE_3275 3663945 - 3661636 - | malic enzyme TERM 3296 3661792 - 3661745 - G 71 -12.7 -3.21593 | gap 2, overlap 3661743 3661746 GACGGCGTCAGAATA TGCGCCGGCCGCGCCGGGCCGAT CAGG ATCGGCCCCAC-CGGC-AGCGCG TCCGCCAGCACCTTG TERM 3297 3661791 - 3661746 - G 77 -16.2 -2.52742 | gap 2, overlap 3661745 3661743 ACGGCGTCAGAATAT GCGCCGGCCGCGCCGGGCCGAT CAGG ATCGGCCCCAC-CGGC-AGCGC GTCCGCCAGCACCTT TERM 3298 3662507 - 3662539 + g 77 -12.7 -3.65812 | gap 1 CGCGCCTCGACCACC GCGGGC-CGGCCGA CCAGGA TCGGCCGCGCCAGC TTCTCTTCCAGCACG TERM 3299 3663196 - 3663163 - G 77 -5.2 -4.61231 | gap 1, opp_overlap 3663185, overlap 3663166 GGACAGGCCCAAAAA CACG-TCGGCGCCGC CGATC ACCTCGCCGAGCGTG CGCTTGTCGGTGTCC TERM 3300 3664023 - 3664054 + r 71 -10.9 -3.44848 | gap 1, overlap 3664021 AAAAAACCGTCTACT CGT-CATGGCCGGG CGCGT CCCGGCCATCCACG TCTTTGCTGCAGCCC aspS 3665907 - 3664135 - | aspartyl-tRNA synthetase TERM 3301 3666424 - 3666413 - g 72 -7.2 -4.2828 | overlap 3666414 GCTGATCGACCAAAA CGGC GTCC GCCG CGACATCCAGCTCAA RPE_3277 3666003 - 3667580 + | hypothetical protein RPE_3278 3667696 - 3668874 + | ribonuclease D RPE_3279 3668871 - 3669794 + | hypothetical protein RPE_3280 3671325 - 3669817 - | Ppx/GppA phosphatase TERM 3302 3670620 - 3670582 - G 77 -13.1 -3.53091 | gap 1 ATTGGCGCCGGCAAA GCGGCGAACCCGGCTGGC GAAG GCCAGC-GCTTCCGCCGC CGGGAGCGAATAGCC RPE_3281 3673611 - 3671350 - | polyphosphate kinase RPE_3282 3674378 - 3673704 - | hypothetical protein TERM 3303 3673767 - 3673778 + g 74 -5.8 -4.56597 | GCCCAGCCGCAGCGC CTCG GTGT CGAG TTTTTCCACCGCCCG RPE_3283 3674983 - 3674438 - | CDP-alcohol phosphatidyltransferase RPE_3284 3675250 - 3676323 + | phosphoribosylaminoimidazole synthetase TERM 3304 3676559 - 3676581 + G 71 -14.9 -2.64616 | overlap 3676542 CAAGCTGCAGCAGGC GCTCGACGC TCACC GCGTCGAGC TGATCTGCCTCGGCG TERM 3305 3676952 - 3676987 + G 85 -15.4 -3.64703 | GGCGAAGCTCTCGGA CGCCGTGCTGATCGTG CCGG CGCGCTGAGCACGGCG TTTCAATCGGACAAG RPE_3285 3676329 - 3676979 + | phosphoribosylglycinamide formyltransferase TERM 3306 3677029 - 3677007 - T 88 -8.3 -4.78839 | opp_overlap 3677007 3677008, overlap 3677008 AATCGGACAAGAAAA TCCCCCGGC AACCG ACCGGGGGC TTTTACGCAAACCGC TERM 3307 3677007 - 3677029 + T 70 -7.6 -4.07568 | opp_overlap 3677007 3677008, overlap 3677008 AATCGGACAAGAAAA TCCCCCGG CAACCGA CCGGGGGC TTTTACGCAAACCGC TERM 3308 3677028 - 3677008 - T 74 -11.8 -3.46219 | opp_overlap 3677007 3677008, overlap 3677007 ATCGGACAAGAAAAT CCCCCGGC AACCG ACCGGGGG CTTTTACGCAAACCG RPE_3286 3677252 - 3677049 - | cold-shock DNA-binding domain-containing protein TERM 3309 3677424 - 3677396 - R 100 -13.8 -4.77036 | CGCCACGACGAAAAA GACGCGCCACGC TTCAC GCGTGCCGCGCC ACAAACGGTGCTCCG TERM 3310 3677611 - 3677595 - R 70 -7.9 -4.00042 | TTTGCCAGCAAACAA CCTTCGC GCC GCGATGG AACCGGGACCGCACA TERM 3311 3677662 - 3677633 - R 100 -21.5 -4.35116 | overlap 3677614 GACCGCACAGCAAAA CACCGGGCCCTGC CGCA GCAAGGCCCGGTG TCCGCTCGAGTCAAA RPE_3287 3678116 - 3677694 - | nucleoside-diphosphate kinase TERM 3312 3678502 - 3678483 - H 75 -4.2 -4.72986 | gap 1, opp_overlap 3678483, overlap 3678484 GACGTCGACGAAAAA CCCATGCCG TAC CGGC-TGGC ATTGCTGCTCGACAA TERM 3313 3680340 - 3680312 - g 74 -7.4 -4.21194 | gap 1, opp_overlap 3680312 3680314 CGCGATTATCGAAAA GATCGATGCGGCG CTGG CGCTGC-CCGATC TGTTCACCCGCGATC RPE_3288 3678603 - 3680468 + | ABC transporter related TERM 3314 3680604 - 3680565 - T 91 -18.6 -3.09273 | gap 1, opp_overlap 3680556, overlap 3680535 TTGTGCGAAGAGAGA TTCCGGGTTCGCGTGCAGC TTC GCTGCCCGCGC-CCCGGAA TGACGACGCGTTGTG RPE_3289 3681220 - 3680663 - | hypothetical protein RPE_3290 3681778 - 3681326 - | DNA polymerase III subunit chi RPE_3291 3683271 - 3681775 - | leucyl aminopeptidase TERM 3315 3683441 - 3683457 + H 78 -10.1 -4.07568 | overlap 3683407 GGAACGGTCCGGATC GCCGCGA CGA TCGTGGC TTTTCGACGACACCC RPE_3292 3683651 - 3684817 + | permease YjgP/YjgQ RPE_3293 3684831 - 3685916 + | permease YjgP/YjgQ TERM 3316 3686932 - 3686884 - g 93 -18.9 -3.46509 | opp_overlap 3686895, overlap 3686878 TCCGAACAATAGCAA CTTAGCCCCGATCGCGCAGCG CGATTTT CGCGGCGCGATCGACGCCAAG GGCCAGTTCGCTCTG TERM 3317 3686895 - 3686907 + G 75 -9.1 -4.07687 | opp_overlap 3686884 3686878 GCAACTTAGCCCCGA TCGCG CAG CGCGA TTTTCGCGGCGCGAT RPE_3294 3685916 - 3688399 + | organic solvent tolerance protein TERM 3318 3688426 - 3688441 + F 80 -4.6 -4.88918 | opp_overlap 3688402, overlap 3688428 CGCCCTCGCTCACGG GCGCCA CGTC TGGCAC TTTTGTTTCACATCG TERM 3319 3689306 - 3689294 - g 87 -6.9 -5.04385 | GACACGCCGAAAAAA CGCGA GAT CCGCG AAAAGATGTTCGCCG RPE_3295 3688475 - 3689392 + | hypothetical protein TERM 3320 3689663 - 3689684 + G 70 -2.1 -4.57569 | overlap 3689665 3689671 GAATTCGCCGAGGTT TTGCCGCAG GACG CTTCGGCCG TTTTTGCCGAGGTAC pdxA 3689483 - 3690496 + | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 3321 3691246 - 3691299 + G 72 -7.1 -4.1822 | gap 1, opp_overlap 3691217 3691216, overlap 3691246 CCGGCACGGCTGGCC G-CCGCGGCCGGTGTCGAGCCGACGC GGC GCGCCGAGACCATTCCGGTCGCGGGC TTTGTTGCCATGGCC ksgA 3690493 - 3691356 + | dimethyladenosine transferase RPE_3298 3691371 - 3692426 + | alcohol dehydrogenase TERM 3322 3692458 - 3692489 + F 100 -18.8 -3.66844 | opp_overlap 3692461 CGCAGGACGTGCATA TCAGGCCCGCTTAC GCCA GCAAGCGGGCCTGA TTCTTGCCCTATCGC TERM 3323 3692486 - 3692461 - f 83 -16.9 -2.63102 | opp_overlap 3692458 AGGACGTGCATATCA GGCCCGCTTAC GCCA GCAAGCGGGCC TGATTCTTGCCCTAT RPE_3299 3692596 - 3693504 + | hypothetical protein RPE_3300 3694553 - 3693537 - | hypothetical protein TERM 3324 3694531 - 3694508 - G 73 -9.4 -3.95584 | opp_overlap 3694503, overlap 3694509 GGCCGACGAAGCAAA GCGCGGCGGC CACA GCCGCCCCGA ACCGCATTTTTGCAT TERM 3325 3694530 - 3694509 - G 70 -12.9 -2.97029 | opp_overlap 3694503, overlap 3694508 GCCGACGAAGCAAAG CGCGGCGGC CACA GCCGCCCCG AACCGCATTTTTGCA TERM 3326 3694572 - 3694584 + r 72 -2.6 -4.70169 | overlap 3694571 TCGCCCCTTGCCTTG CGGT CCGTC GCCG TTTTGTTGAATCTAG gmk 3695258 - 3694596 - | guanylate kinase RPE_3302 3696148 - 3695261 - | hypothetical protein RPE_3303 3697503 - 3696247 - | aminodeoxychorismate lyase TERM 3327 3697594 - 3697604 + r 86 -8.2 -4.56597 | TCGGCAATGCGGAAG CGCC ACC GGCG TTTTTCCGAACCACC RPE_3304 3698944 - 3697679 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 3328 3699019 - 3698981 - R 100 -24.6 -3.29471 | opp_overlap 3698981 3698984, overlap 3698984 TCCGCAGCATAGCAA GAAGCCGGTGGGGCCGCA GAC TGCGGCCCTTCCGGCTTC TTCAATGCCGCGTTA TERM 3329 3698981 - 3699019 + r 100 -26.8 -3.06133 | opp_overlap 3698981 3698984, overlap 3698984 TCCGCAGCATAGCAA GAAGCCGGTGGGGCCGCA GAC TGCGGCCCTTCCGGCTTC TTCAATGCCGCGTTA TERM 3330 3698984 - 3699016 + r 100 -22.7 -3.67597 | opp_overlap 3698981 3698984, overlap 3698981 GCAGCATAGCAAGAA GCCGGTGGGGCCGCA GAC TGCGGCCCTTCCGGC TTCTTCAATGCCGCG TERM 3331 3699016 - 3698984 - R 100 -20.5 -3.78778 | opp_overlap 3698984 3698981, overlap 3698981 GCAGCATAGCAAGAA GCCGGTGGGGCCGCA GAC TGCGGCCCTTCCGGC TTCTTCAATGCCGCG acpP 3699280 - 3699041 - | acyl carrier protein TERM 3332 3699531 - 3699568 + r 73 -12.7 -3.12378 | gap 1, opp_overlap 3699530 3699529, overlap 3699535 GCCTTGACTACAAGC CTACACCGACGCTCCCGA GGA TCGAGGGCGTCGG-GTCG TTGCGTCATATCATT RPE_3306 3700311 - 3699574 - | 3-oxoacyl-(acyl-carrier-protein) reductase RPE_3307 3701300 - 3700341 - | malonyl CoA-acyl carrier protein transacylase TERM 3333 3701449 - 3701410 - H 74 -9.8 -3.70853 | gap 1, overlap 3701407 CCAAGGAGTGAAGAA GGCCGGCGATCCCGGCGCC CTT GGCGC-GGCAAGTCCGGCC GTAAGACACCCGCGG RPE_3308 3701617 - 3702903 + | diguanylate cyclase rpsF 3703150 - 3703623 + | 30S ribosomal protein S6 rpsR 3703629 - 3703868 + | 30S ribosomal protein S18 TERM 3334 3703871 - 3703909 + T 77 -4.3 -4.93296 | gap 1, overlap 3703877 CGTCATTCGCTGACG CGTTTGCGGCCGGCG-CC TTCG GGTCGCCGGCCGTTTCCA TTTTTGTAGTCATAA TERM 3335 3703877 - 3703903 + T 100 -17.3 -4.03085 | gap 1, overlap 3703871 TCGCTGACGCGTTTG CGGCCGGCG-CC TTCG GGTCGCCGGCCG TTTCCATTTTTGTAG RPE_3311 3705053 - 3704124 - | hypothetical protein RPE_3312 3706347 - 3705484 - | hypothetical protein TERM 3336 3706319 - 3706337 + g 72 -8.2 -4.08767 | TTGGACCCGAGCCGT TCGATCAG GGC CTGATTGA TTTTCGCCAACTCAG RPE_3313 3706618 - 3706349 - | hypothetical protein TERM 3337 3707163 - 3707187 + H 80 -4.8 -4.86385 | overlap 3707157 3707164 3707165 AATTAGAAAGCTGTC ACGCGGCTCC TATTC GGGGCCGCAC TTTCTTTTTGAGCCT TERM 3338 3708011 - 3707986 - g 72 -5.3 -4.35461 | gap 1, overlap 3707980 3707987 GCAAGATCACCAAAA CCTCGGGACGCT TGC AGCGGCCCT-GG CCGGACCTGAAGGCC RPE_3314 3707382 - 3708371 + | hypothetical protein rplI 3708392 - 3708976 + | 50S ribosomal protein L9 TERM 3339 3709004 - 3709033 + T 100 -17.9 -4.27316 | opp_overlap 3709006 CCCGCTCACGCGGAA CAGCCCGGCCTGA TCGC TCAGACCGGGCTG TTTTGCATTCAGGCG TERM 3340 3709031 - 3709006 - T 88 -16.9 -3.04144 | opp_overlap 3709004 CGCTCACGCGGAACA GCCCGGCCTGA TCGC TCAGACCGGGC TGTTTTGCATTCAGG TERM 3341 3709082 - 3709105 + T 100 -18.2 -3.90291 | opp_overlap 3709082, overlap 3709070 GAGCGCGAATCAAAA CCGGCGCGAT TGAG ATCGCGCCGG TTTCGTTGGGACAGT TERM 3342 3709105 - 3709082 - T 100 -18.2 -4.41494 | opp_overlap 3709082 3709070 GAGCGCGAATCAAAA CCGGCGCGAT TGAG ATCGCGCCGG TTTCGTTGGGACAGT RPE_3316 3710443 - 3709124 - | hypothetical protein TERM 3343 3710082 - 3710134 + g 71 -9.1 -3.78329 | gap 3, overlap 3710078 TCCTGCGGCTGCGCC TCGCGCTGC-CGGCGG-GTCGG-CGG CGCT TCGACCGGCTCCGCGGCGCGGCCCGA TTTGGCTTCCTCGCC TERM 3344 3710523 - 3710562 + H 76 -7 -4.42653 | gap 1, opp_overlap 3710517 TTGGAAGCATGCCGA TCGCGCATCCGCGTGAGCG GAC CGCA-ACGCTGTTACGCGA TTTTATGAATCGGGT TERM 3345 3711174 - 3711214 + H 71 -13.3 -3.07816 | gap 2, opp_overlap 3711167 GGGCATAAGGCCGGT CCGCCCTGT-G-CGCCCGC TTGCC GCGGCCGACCGCAGGGCGG TTAAGTCGCTCGCCG RPE_3317 3711291 - 3712787 + | replicative DNA helicase TERM 3346 3713572 - 3713555 - g 72 -4.8 -4.47259 | opp_overlap 3713555, overlap 3713557 ACCATAACAGCAAAA TCGGGA CCTGGC CCCCGA TTGCTTGTTACCCGG RPE_3318 3713053 - 3716892 + | hypothetical protein RPE_3319 3717013 - 3717270 + | replicative DNA helicase-like protein RPE_3320 3717815 - 3719032 + | hypothetical protein RPE_3321 3719029 - 3719754 + | ABC transporter related RPE_3322 3719754 - 3720806 + | secretion protein HlyD family protein RPE_3323 3721943 - 3720831 - | periplasmic sensor signal transduction histidine kinase TERM 3347 3721880 - 3721858 - G 70 -8.4 -3.97088 | overlap 3721869 3721871 3721874 CTGTAGAAGATGAAA GTGCCGACGA ACA CCATCAGCAC CGCGATGGCGGCGAC RPE_3324 3722626 - 3721940 - | two component transcriptional regulator RPE_3325 3723022 - 3722699 - | hypothetical protein RPE_3326 3723322 - 3724551 + | RND family efflux transporter MFP subunit TERM 3348 3724536 - 3724562 + F 70 -11.6 -3.14132 | overlap 3724539 3724554 GCGCGCCGTGCGCCC GAGGGCCGAG CCATGAT CTCGGCCTTC TTCATCAGAAGGCCG TERM 3349 3724539 - 3724559 + F 71 -9.7 -3.71848 | overlap 3724536 3724554 CGCCGTGCGCCCGAG GGCCGAG CCATGAT CTCGGCC TTCTTCATCAGAAGG TERM 3350 3724554 - 3724578 + G 72 -14.4 -3.06492 | opp_overlap 3724573 3724574, overlap 3724539 3724536 GGCCGAGCCATGATC TCGGCCTTCT TCATC AGAAGGCCGA TCTTCGCCTGGGTGA TERM 3351 3727491 - 3727537 + G 74 -15.1 -3.06183 | gap 2 GCGTTCATCCTCGGC GTC-GCGCCGCTG-GTCGTCGCC AGC GGCGCCGGCTCGGCGGCGCAGAA TTCGATCGGCATCGG RPE_3327 3724548 - 3727715 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein RPE_3328 3727726 - 3728115 + | hypothetical protein TERM 3352 3729096 - 3729143 + G 70 -11.2 -3.49475 | gap 1, overlap 3729084 3729082 GGCGATTGCTGTCGC GGCAGTGGCGCGGCCGGACCGCA ACC TGCTGTTCCGCT-CGCCGGTGCC TTATGTCGCGGTCGC RPE_3330 3728437 - 3730044 + | hypothetical protein RPE_3331 3730122 - 3730217 + | hypothetical protein RPE_3332 3730265 - 3730822 + | GCN5-related N-acetyltransferase TERM 3353 3731334 - 3731304 - g 78 -6.1 -4.59109 | gap 1 GAGATTCGCGAAAAA CGGCCGCTCTAC GCCGAGAT GTTG-GCGGCCG CCGCCCAGGCCGTCG RPE_3333 3731055 - 3732104 + | diguanylate cyclase TERM 3354 3732718 - 3732750 + G 74 -14.8 -3.02471 | gap 1 CGCTGGAGGAGGCCC GCGCGGTC-CGCGCG GCGG CGCCCGAGGCCGCGC TCTATGTGCTGAACG RPE_3334 3732447 - 3733661 + | alanine racemase RPE_3335 3734160 - 3733672 - | GCN5-related N-acetyltransferase RPE_3336 3734635 - 3734237 - | hypothetical protein TERM 3355 3734394 - 3734368 - G 100 -11.7 -4.82667 | gap 1 CGATCACATCAAAAA GGC-GCTGGAAA TTGG TTTCCAGCAGCC ACAGCGCCAACAGCG TERM 3356 3734762 - 3734705 - H 71 -9.4 -3.68351 | gap 3, opp_overlap 3734724, overlap 3734724 TTGCGAGGAGCGAAA GCGA-CGAAGCAATCCAGAATCCAGTGCA CGG CGCACTGGA-T-TGCTTCGCTTCGCTCGC AATGACGGGGATAAG TERM 3357 3734744 - 3734724 - H 74 -11.9 -3.45134 | opp_overlap 3734724, overlap 3734705 CGAAGCAATCCAGAA TCCAGTGCA CGG CGCACTGGA TTGCTTCGCTTCGCT TERM 3358 3734724 - 3734744 + H 71 -11.2 -3.40788 | opp_overlap 3734705 3734724 CGAAGCAATCCAGAA TCCAGTGC ACGGC GCACTGGA TTGCTTCGCTTCGCT TERM 3359 3735688 - 3735664 - g 77 -13.5 -3.54029 | opp_overlap 3735661 TCGCATCAAGGAGAA CGCGCCCACCC GAA GGATGGTCGCG TCATGCTGTAACTCT RPE_3337 3735404 - 3735916 + | hypothetical protein TERM 3360 3736290 - 3736307 + G 72 -5.5 -4.3739 | gap 1 GCTGGCCGAGCTCGA CCG-CGTC ACC GGCGGCGG TTTTGTGCGCGGCTC TERM 3361 3736835 - 3736818 - g 70 -4.1 -4.56597 | gap 1, opp_overlap 3736833, overlap 3736819 GCGCGCGGTGAAAAA CCGGTTCG GGC CGA-CCGA CGAGATCGGCGTGTT TERM 3362 3737349 - 3737296 - g 75 -14.3 -3.33696 | overlap 3737240 GCGCGGCTGAAGGAA GCCGCCAAGCTCGGCTTCGGCCGCG CGAT CCTGCCCGAAGCGGCGCGCGGCGGC GAGACGGGCGGCGAT RPE_3338 3736048 - 3737517 + | DNA repair protein RadA RPE_3339 3737722 - 3738348 + | colicin V production protein RPE_3340 3738371 - 3739861 + | amidophosphoribosyltransferase TERM 3363 3739910 - 3739885 - f 85 -14.7 -3.64703 | overlap 3739887 TCGTCGCCATCTAAA TACCGGCCGGA CATT TCCGGCCGGTC TCCCCTCAAAATGCC TERM 3364 3739908 - 3739887 - f 93 -17.3 -3.40597 | overlap 3739885 GTCGCCATCTAAATA CCGGCCGGA CATT TCCGGCCGG TCTCCCCTCAAAATG RPE_3341 3739997 - 3740737 + | short-chain dehydrogenase/reductase SDR TERM 3365 3740836 - 3740797 - f 77 -13.6 -3.28712 | gap 1, opp_overlap 3740835 TGCCGCTCCGCAGAA CCGGGACCGT-CGCGAATG CCG CATTCCGGTACGGCCCCGG ATCAGCAGCGCACCC TERM 3366 3740835 - 3740864 + F 89 -10.7 -4.25104 | opp_overlap 3740797, overlap 3740836 TTCCGGTACGGCCCC GGATCAGCAGCGC ACCC GCGGTGCTGATCA TTTTCATCCACGCCG TERM 3367 3740836 - 3740863 + F 80 -14.2 -3.14848 | overlap 3740835 TCCGGTACGGCCCCG GATCAGCAGCGC ACCC GCGGTGCTGATC ATTTTCATCCACGCC TERM 3368 3740990 - 3741010 + G 86 -9.7 -4.62471 | opp_overlap 3740983 3740988 CGACGCAAGGAATCG TCCCGCG CAATGGC CGCGGGA TTTTTGGCGCTTGGA RPE_3342 3740972 - 3741373 + | hypothetical protein TERM 3369 3741583 - 3741530 - f 78 -14.8 -3.09516 | gap 2, opp_overlap 3741533 3741538 3741542 3741576, overlap 3741534 3741538 3741542 3741549 TTTGCGAGGAGCGAA GCGA--CGAAGCAATCCAGAATCCCG TGCT CGGCACACTGGATTGCTTCGCTTCGC TCGCAATGACGGGTG TERM 3370 3741533 - 3741578 + F 71 -13.3 -3.06183 | opp_overlap 3741530 3741534 3741538 3741542 3741549, overlap 3741538 3741542 3741576 GCGAGGAGCGAAGCG ACGAAGCAATCCAGAATCCCG TGCT CGGCACACTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 3371 3741577 - 3741534 - f 87 -19 -2.55544 | opp_overlap 3741533 3741538 3741542 3741576, overlap 3741530 3741538 3741542 3741549 CGAGGAGCGAAGCGA CGAAGCAATCCAGAATCCCG TGCT CGGCACACTGGATTGCTTCG CTTCGCTCGCAATGA TERM 3372 3741573 - 3741538 - f 73 -12.6 -3.22388 | opp_overlap 3741533 3741538 3741542, overlap 3741534 3741530 3741542 3741549 GAGCGAAGCGACGAA GCAATCCAGAATCCCG TGCT CGGCACACTGGATTGC TTCGCTTCGCTCGCA RPE_3343 3741884 - 3742192 + | hypothetical protein RPE_3344 3743500 - 3742208 - | major facilitator transporter TERM 3373 3743484 - 3743427 - G 82 -12.7 -3.95022 | gap 4, overlap 3743420 GTGACGAAGACGAAA CCGACCGC-GGCGC-GCCGCGGC-CCGCC CGAC GGCGGCGCGACGGCTGCGTCTGCGA-CGG TCTCGCCTGCGCTCA engA 3744879 - 3743497 - | GTP-binding protein EngA RPE_3346 3745466 - 3744942 - | hypothetical protein RPE_3347 3746203 - 3745550 - | hypothetical protein panB 3747208 - 3746387 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase RPE_3349 3747796 - 3747212 - | NnrU family protein TERM 3374 3747332 - 3747358 + g 70 -10.8 -3.53811 | opp_overlap 3747284 3747283 3747306 TCCGCCGACCGGGAT CGGCGGACCG CCGGCAT CGGTGCGCCG TTTCAGCGAAATCCG TERM 3375 3748194 - 3748175 - g 83 -12.8 -4.07885 | GACGTGGTTGCAAAA GCGGCGCC CAAC GGCGCCAC GCTCGGCATCTCGCT RPE_3350 3747908 - 3748900 + | hypothetical protein TERM 3376 3748956 - 3748922 - T 100 -19.3 -4.35524 | gap 1 CCGCGAAACCGAAAA GCCACGGCGGCGG-GC TTGC GCACCGCCGCCGCAGC TGAACGTGGGAACCT RPE_3351 3749420 - 3748971 - | hypothetical protein RPE_3352 3749852 - 3749586 - | hypothetical protein RPE_3353 3750480 - 3750064 - | hypothetical protein TERM 3377 3750222 - 3750206 - G 91 -11.5 -4.25104 | CGGCGCGCACGAAAA CCCGCGC GGC GCGCAGG CTGAATCAGCAGATG RPE_3354 3750750 - 3750613 - | hypothetical protein RPE_3355 3751298 - 3751026 - | hypothetical protein gatB 3752798 - 3751314 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 3378 3752449 - 3752465 + g 80 -9.4 -4.22009 | ACCTCGACCACGCCT TCGCCG ACCAC CGGCGA TTTGTATTGGCTGAT RPE_3357 3754282 - 3752897 - | patatin TERM 3379 3754106 - 3754079 - G 73 -6.2 -4.41494 | gap 1, overlap 3754080 3754081 CACGCCGAACGAAAA CGCC-GCGGCG CGGGTGC CGCCGCCGGAG AACGACAGGCCGATC gatA 3755925 - 3754447 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 3380 3754712 - 3754690 - G 81 -14.8 -3.59979 | CTCGCCGATGCCAAA CGCCGCCGAC GGC GTCGCCGGCG TCAGGATCGCGGAGA TERM 3381 3755767 - 3755786 + g 70 -10.6 -3.53811 | GGCCGCCTTCGCCAT CGCCCGCG CCTG CTCGGGCG TTTCCAGCACATAGG TERM 3382 3756370 - 3756360 - g 95 -3.2 -5.58454 | overlap 3756362 TGGAGACGAAAAAAA GCTC CTC GAAC GGTTCAAGCAAACGT RPE_3359 3756106 - 3756387 + | hypothetical protein RPE_3360 3756431 - 3756628 + | hypothetical protein TERM 3383 3756625 - 3756657 + T 70 -10.6 -3.61715 | opp_overlap 3756623, overlap 3756629 CAAGCTGAAGAAGGC GTGAGCGGGTCCG-CG CAC CGACGGTCCCGCT-AC TTGTTGACCGGGCTG TERM 3384 3756629 - 3756654 + T 70 -12.5 -2.93073 | gap 1, opp_overlap 3756623, overlap 3756625 CTGAAGAAGGCGTGA GCGGGTCCG-CG CAC CGACGGTCCCGC TACTTGTTGACCGGG RPE_3361 3756860 - 3756654 - | hypothetical protein gatC 3757168 - 3756881 - | aspartyl/glutamyl-tRNA amidotransferase subunit C RPE_3363 3758320 - 3757241 - | 2-nitropropane dioxygenase, NPD RPE_3364 3758637 - 3758413 - | hypothetical protein TERM 3385 3759281 - 3759262 - g 79 -13.6 -3.6968 | opp_overlap 3759253, overlap 3759253 TTACAACGGCAACAA GATCGCCG ATTT CGGCGATC CCACCGGCTTGAAGA RPE_3365 3758867 - 3759802 + | cyclase family protein RPE_3366 3760456 - 3759839 - | TetR family transcriptional regulator TERM 3386 3760477 - 3760525 + r 100 -20.6 -3.6682 | gap 1, opp_overlap 3760485 3760495, overlap 3760483 CGATCCTGCTGCAAT TCAC-AGGAGCGTAAGGAAGCGG GGCG CCGCTTCCTTACGCTCTTCGTCA TTTCGATGGGTGCCG TERM 3387 3760483 - 3760518 + r 100 -26.4 -3.33483 | opp_overlap 3760485 3760495, overlap 3760477 TGCTGCAATTCACAG GAGCGTAAGGAAGCGG GGCG CCGCTTCCTTACGCTC TTCGTCATTTCGATG TERM 3388 3760516 - 3760485 - R 100 -23.2 -2.66733 | opp_overlap 3760483 3760477, overlap 3760495 CTGCAATTCACAGGA GCGTAAGGAAGCGG GGCG CCGCTTCCTTACGC TCTTCGTCATTTCGA RPE_3367 3762502 - 3760523 - | 67 kDa myosin-cross-reactive antigen family protein RPE_3368 3762797 - 3763288 + | Holliday junction resolvase YqgF TERM 3389 3763450 - 3763499 + G 72 -15 -2.68419 | gap 3, overlap 3763476 3763477 CATCGACACGCTGGC GCGG-GCGCCGCTCGGCGCGGTGCC GGT GGCGG-GCGTCG-GCGGCGCGCTGC TGCTCTCCGTTCTTG RPE_3369 3763292 - 3764218 + | auxin efflux carrier RPE_3370 3764907 - 3764224 - | cyclic nucleotide-binding protein TERM 3390 3765328 - 3765300 - R 74 -9.8 -3.78775 | gap 1, overlap 3765302 GGCTGGATTAGGAAA GA-TTGCTGTTCA AAAT TGAACAGCAACTC AATCCGTCGAACGCC TERM 3391 3765325 - 3765302 - R 76 -12.6 -3.48024 | overlap 3765300 CTGGATTAGGAAAGA TTGCTGTTCA AAAT TGAACAGCAA CTCAATCCGTCGAAC RPE_3371 3766135 - 3765452 - | cyclic nucleotide-binding protein RPE_3372 3767181 - 3766411 - | peptidase M15D, vanX D-ala-D-ala dipeptidase TERM 3392 3768135 - 3768110 - g 81 -16.1 -3.14132 | TCCGGGGCCGATGAA CCGCGGCGTCG AGAT CGACTCCGCGG TTGCCGACGGCGCCC pyrB 3767286 - 3768239 + | aspartate carbamoyltransferase catalytic subunit RPE_3374 3768244 - 3769545 + | dihydroorotase RPE_3375 3769583 - 3770176 + | putative glycerol-3-phosphate acyltransferase PlsY RPE_3376 3770703 - 3770194 - | hypothetical protein RPE_3377 3771022 - 3772140 + | DNA processing protein DprA, putative RPE_3378 3772394 - 3772143 - | hypothetical protein TERM 3393 3774737 - 3774719 - g 83 -8.8 -4.59773 | overlap 3774722 CGGGATTCCCAAAAA CATGTCGC CCG GCGACGTG GAGCTGGAGCTGGCG TERM 3394 3774888 - 3774859 - g 83 -3.6 -5.1861 | gap 2, overlap 3774863 TGCAGCACGAAAAAA CCT-AT-GCCAGCC TGGA GGCCGGCGACGAGG TGTTCAACATCGGGC TERM 3395 3775259 - 3775220 - g 73 -11.2 -3.62522 | overlap 3775208 3775254 GAAGGCGGCGAAGAA GGCCGCCAAGCCTGCTGC CGAT GCAGCCGACAAGCCGGCC AAGAAGGCGGTGGCG RPE_3379 3772566 - 3775400 + | DNA topoisomerase I TERM 3396 3775475 - 3775451 - f 87 -18.7 -2.78384 | TTCTTGCGGATTAGA CCGACTCAGAC ATA GTCTGAGTCGG GGAATGAGCACCTTC TERM 3397 3777074 - 3777034 - g 100 -21.1 -3.17075 | opp_overlap 3777036, overlap 3777036 CGGCCGCGAACTCAA CATCGCCGCCCACGACGCC GGC GGCGCCGAGGACGGCGATC TGGTCAGCGTCACCA TERM 3398 3777072 - 3777036 - g 100 -23.7 -3.14878 | opp_overlap 3777036, overlap 3777034 GCCGCGAACTCAACA TCGCCGCCCACGACGCC GGC GGCGCCGAGGACGGCGA TCTGGTCAGCGTCAC TERM 3399 3777036 - 3777072 + G 93 -19.3 -2.79183 | opp_overlap 3777036 3777034 GCCGCGAACTCAACA TCGCCGCCCACGACGCC GGC GGCGCCGAGGACGGCGA TCTGGTCAGCGTCAC TERM 3400 3777180 - 3777164 - g 78 -6.5 -4.65895 | CTGGCCACCGAAAAA GCGGTCA GCC TGATCGC GATCCATTCCCACGA RPE_3380 3776486 - 3778894 + | ribonuclease R TERM 3401 3779085 - 3779104 + G 71 -2.8 -4.57569 | gap 1, overlap 3779087 3779092 AAGACCGCCGATCAT TGCTCGGCC TGC GGCC-AGGA TTTTTCGCCGCATCG TERM 3402 3779395 - 3779339 - g 100 -21.8 -3.40403 | gap 1 CGGTTTTGACGACAA TCCCTCTTCCGA-TGTCCCGCCGGTCT AGCT AGACCGGAGGAACAATCGAAAGCGGGA ATGAATGAGCGAGAC RPE_3381 3778917 - 3779366 + | hypothetical protein RPE_3382 3779400 - 3780143 + | NUDIX hydrolase rpmG 3780261 - 3780428 + | 50S ribosomal protein L33 TERM 3403 3780454 - 3780472 + F 100 -13.1 -4.98531 | overlap 3780464 CGGACGGATTTTGGA CGGGGCC CTCGC GGCCCCG TTTTTCGTTTGCGGC TERM 3404 3780549 - 3780575 + F 73 -3.5 -4.72986 | overlap 3780516 3780550 3780551 CTGTTGCTGGGAGAG GTGCGCGGTGC TTGCC GCGCCGGGCGA TTTTTCATACGGGTC RPE_3384 3780961 - 3781698 + | FkbM family methyltransferase TERM 3405 3781763 - 3781781 + T 100 -13.1 -4.98531 | CTGACGGATCTTCGA CGGGGCC CTCGC GGCCCCG TTTTTCGTTTGCGGG TERM 3406 3782406 - 3782460 + T 74 -14.3 -2.55351 | opp_overlap 3782399 3782436, overlap 3782405 GTGAACAAGCCCCGC GTCGGTCATTCCGGG-GCGCGCGCAGC AAA GCTGCGGGCGAACCCGGAATC-CCGAG ATTGGTGTGAAGAAC TERM 3407 3782532 - 3782492 - T 93 -21.2 -2.98823 | gap 1 CGTTGCCGAGAGAGA TTCCGGGTTCGCCCGCCGC TGGC GCGGCGGACGC-CCCGGAA TGACGCCGTAGAAAT TERM 3408 3783016 - 3782988 - T 70 -11.7 -3.14344 | opp_overlap 3783013 GACCGTGGTGACTAA CTCGTGTGCTTTG TTT CACTGCACACGAG GCCGCGGGTGCATCG TERM 3409 3783109 - 3783088 - T 93 -13.7 -4.18762 | gap 1 AACGTTCACCCAAAA CCCG-GGCGC CAC GCGCCGCGGG AACGGGACGGCATGT pleD 3784762 - 3783389 - | response regulator PleD RPE_3386 3785137 - 3784772 - | response regulator receiver protein TERM 3410 3785334 - 3785360 + G 76 -15.1 -3.14132 | GCGCTGTCCTTCCTC GCCTCCCAGCC CGAGC GGCTGGGCGGC TTCCTGGCCGAGACC RPE_3387 3785265 - 3785564 + | hypothetical protein TERM 3411 3785573 - 3785598 + G 79 -11.7 -3.86015 | GCCGTGAGCCAGGCT CCAGCCGCGCC GCCC GGCCCGGCCGG TTTCTGCCGGGACTG RPE_3388 3785561 - 3786859 + | DNA polymerase IV TERM 3412 3786938 - 3786918 - f 75 -3.2 -4.91109 | overlap 3786919 CGCGCAGCACAAAAA CGCTGCAG TGCGT CCGCAACA CCGATATGGTATTTT RPE_3389 3787043 - 3787327 + | hypothetical protein RPE_3390 3788268 - 3787399 - | hypothetical protein TERM 3413 3788197 - 3788158 - G 86 -17 -3.25823 | CTGGTGCGACAGGAA CGGCGTCGGCGCGCCGGC TTGC GCCATCCCGCCGAAGCCG AGCGCCATGAGTGGC RPE_3391 3788446 - 3788913 + | endoribonuclease L-PSP RPE_3392 3788916 - 3789671 + | glycerophosphoryl diester phosphodiesterase TERM 3414 3790075 - 3790053 - g 70 -8.4 -3.96148 | opp_overlap 3790054, overlap 3790054 CCGTGCTATCAGAAA TCGCATTCGC AGG GCGAATACGT GTTCGACCGCGGCTG TERM 3415 3790705 - 3790721 + G 74 -2.1 -4.81249 | overlap 3790681 GCCGGCACTGGGGCG CGGTCGA GCA TCATCCG TTTTTGCATTTCGAG TERM 3416 3790845 - 3790819 - g 75 -13.7 -3.27653 | opp_overlap 3790819 3790818, overlap 3790817 AGGGCGAGCACAAGA TCGCCCGCGGC TACCT GCCGCAGACGA CTTATTCCGCGCATT RPE_3393 3789759 - 3790988 + | hypothetical protein RPE_3394 3791040 - 3791468 + | histidine triad (HIT) protein RPE_3395 3792200 - 3791736 - | hypothetical protein RPE_3396 3792599 - 3792255 - | hypothetical protein RPE_3397 3793333 - 3792596 - | AzlC family protein TERM 3417 3792783 - 3792773 - G 70 -8.2 -4.0162 | GGTCGACAGCAGAAA CGCC AGC GGCG TCAGCAGCAGGATCG RPE_3398 3793490 - 3793849 + | type IV pilus assembly PilZ RPE_3399 3794884 - 3793856 - | lytic transglycosylase, catalytic TERM 3418 3795307 - 3795321 + G 100 -12.8 -4.41348 | overlap 3795314 CCGCAGCCTTTTTCG GCGCCG AGG CGGCGC TTTATTTCGGCGCCG TERM 3419 3795343 - 3795357 + G 100 -10 -5.02074 | TCGGCGCCGGCTTCG TCGCCA ACA TGGCGA TTTTTTCCACGCTGC RPE_3400 3795057 - 3796187 + | 8-amino-7-oxononanoate synthase bioD 3796184 - 3796825 + | dithiobiotin synthetase TERM 3420 3797630 - 3797656 + G 70 -4.2 -4.57341 | opp_overlap 3797605 3797606, overlap 3797620 3797648 GCGGCTCGCTGCCGC TGGCGGTGACGC TGT GCCGCGCCGACA TTTTTGACGCGCATT TERM 3421 3797820 - 3797762 - g 74 -7.4 -4.19238 | opp_overlap 3797798, overlap 3797763 TGGCCAATCTCAAAA TCTGGCAGGACGA-GCCG-GTGCGCGAGCG GAT CGC-CGCACTCGCGGCATCGCACAGCC-GA GGCCTCGACCGGTTT RPE_3402 3796822 - 3798081 + | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 3422 3798331 - 3798321 - f 74 -2.4 -4.84274 | GAAGCAGAGCAAAAA GCAG AAG CAGC GGCAGAAGAAGCGGA TERM 3423 3798426 - 3798453 + F 71 -9.7 -3.72576 | CGTCGCTGCCGCGCC GGTCGCGCGCG CGACCA CGCCCGCGCCC TTTGCTGCGAAGCCG TERM 3424 3798602 - 3798564 - f 74 -13.1 -3.34013 | gap 2, opp_overlap 3798583, overlap 3798565 CAGGCCGGCAAGCAA CG-CCGGCC-CGACCGCGG CGG CCGCGCCCGCAGCCGGACG CGAATTCAGTTTCAC TERM 3425 3798593 - 3798565 - f 71 -13.7 -2.60194 | opp_overlap 3798583, overlap 3798564 AGGCCGGCAAGCAAC GCCGGCCCGACCG CGG CGGCCGCGCCCGC AGCCGGACGCGAATT RPE_3403 3798694 - 3800157 + | hypothetical protein TERM 3426 3800257 - 3800220 - T 79 -11.3 -3.85698 | opp_overlap 3800226 GCTGCTCCGCAGAAA CGGGACCGTTGCGAA TTCAGCGT TCCGTAACGGCCCCG GATCAGCAGCGCACC TERM 3427 3800360 - 3800388 + T 83 -17.5 -2.52516 | opp_overlap 3800365, overlap 3800365 CGCTGCAGCTCACAA AAAAAGGCCGGCG AAC CGCCGGCCTTTTG CTTGATCGTGCAAAA TERM 3428 3800383 - 3800365 - T 100 -17.4 -5.626 | opp_overlap 3800365 3800360 CAGCTCACAAAAAAA GGCCGGCG AAC CGCCGGCC TTTTGCTTGATCGTG TERM 3429 3800365 - 3800383 + T 100 -17.4 -4.46615 | opp_overlap 3800365, overlap 3800360 CAGCTCACAAAAAAA GGCCGGCG AAC CGCCGGCC TTTTGCTTGATCGTG RPE_3404 3802823 - 3800409 - | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 3430 3800448 - 3800505 + g 81 -10.7 -4.14392 | gap 5 CGACGACCCCTTGGG GCCGCCCGG-GC-CG--GGC-TTCGGCCTC CGC GAGGCCGAGCGCTTGCGCGCGCCGGGCAGC TTTTCCGGCTTCGGC RPE_3405 3803477 - 3803148 - | ATP-dependent Clp protease adaptor protein ClpS TERM 3431 3804321 - 3804297 - g 82 -6.4 -4.75472 | gap 1, opp_overlap 3804296 3804306 TTTATACCAACAAAA GCG-CCAACTC GGTC GAGGTGGTCGC CGTTCTGACTCCAAA RPE_3406 3804011 - 3805753 + | hypothetical protein TERM 3432 3807041 - 3807013 - g 70 -8.8 -3.90328 | gap 1, overlap 3807014 GAGAATCTGGACAAA GCCGCGACC-CGG CGCA CCGCGGTCGCGAT CAATGAGCGTAGCGG RPE_3407 3806140 - 3807894 + | Serine-type D-Ala-D-Ala carboxypeptidase RPE_3408 3808875 - 3808141 - | heat shock protein DnaJ domain-containing protein RPE_3409 3809685 - 3808933 - | hypothetical protein RPE_3410 3810358 - 3809762 - | mobile mystery protein B RPE_3411 3810816 - 3810355 - | XRE family transcriptional regulator RPE_3412 3811856 - 3810933 - | hypothetical protein TERM 3433 3810989 - 3811034 + g 91 -11.8 -4.18018 | opp_overlap 3810984 GCTGGGAAAACCATT CGGCGCGGTTGGCG-GCGCGGC GGCG GCCGCGCTCGTCGAGCG-GCAG TTTTAACTGCCGCAG TERM 3434 3811540 - 3811516 - G 74 -9.9 -3.80573 | opp_overlap 3811528, overlap 3811520 TCGATCACGATGAAA TCGACGCTGCG TTC CACCGCGCCGA CCGCCGCGGCGAATT TERM 3435 3812697 - 3812685 - g 73 -6.2 -4.37013 | overlap 3812676 AAGGAAGCAGCAAAA CGGC TGCGG GCCG GCGACGATATCGACG RPE_3413 3812016 - 3812888 + | pantoate--beta-alanine ligase RPE_3414 3813333 - 3812893 - | hypothetical protein TERM 3436 3813345 - 3813368 + r 73 -11 -3.65314 | opp_overlap 3813344 3813328, overlap 3813347 GCATGGCGAGACGAC GAGCCTTCCG GAAA CGGAAGGCTA TTCTTCGGCGTTGGC TERM 3437 3813347 - 3813366 + r 79 -13.6 -3.40498 | opp_overlap 3813344 3813328, overlap 3813345 ATGGCGAGACGACGA GCCTTCCG GAAA CGGAAGGC TATTCTTCGGCGTTG RPE_3415 3814397 - 3813366 - | hypothetical protein TERM 3438 3814221 - 3814206 - G 70 -2.5 -4.58395 | overlap 3814208 3814209 GCCATGGCGCAAAAA TACCG TTGCCG CGGCA CCGATCGCCAGCAGC TERM 3439 3814507 - 3814479 - R 86 -16.7 -3.19389 | opp_overlap 3814482, overlap 3814482 GAATCCACGCACGAA CAAGGCCGCCCCC AAA GGAAGCGGCCTCG TTCGAAAAGACCATC TERM 3440 3814504 - 3814482 - R 88 -14.8 -3.73647 | opp_overlap 3814482, overlap 3814479 TCCACGCACGAACAA GGCCGCCCCC AAA GGAAGCGGCC TCGTTCGAAAAGACC RPE_3416 3814734 - 3814543 - | hypothetical protein TERM 3441 3814796 - 3814761 - R 74 -6 -4.49389 | gap 1, overlap 3814762 ATCGCACAACTAAAA TGCCGGC-TCGCCCCAA TCC CCGCAGCGATGCCGGCC AACAGCTTGAGTTGC RPE_3417 3815639 - 3814983 - | glutathione S-transferase RPE_3418 3815750 - 3816031 + | hypothetical protein RPE_3419 3816838 - 3816035 - | hypothetical protein RPE_3420 3817683 - 3816865 - | 2,5-didehydrogluconate reductase TERM 3442 3817581 - 3817610 + g 72 -4.9 -4.57341 | gap 1, overlap 3817582 GGCGATAGCCGAGCT TCAGCGCCTG-CTG GAC CAGGCGGGTGCAGG TTTTTCCGCGCAGTT RPE_3421 3818058 - 3817729 - | XRE family transcriptional regulator RPE_3422 3819525 - 3818104 - | magnesium transporter TERM 3443 3819188 - 3819206 + g 72 -11.6 -3.57263 | opp_overlap 3819183 TCGGAATCCAGTTCG CGGACGCC TTC GGCGACCG TTTCCGGCTCCAGCT RPE_3423 3819688 - 3820464 + | polysaccharide deacetylase RPE_3424 3820579 - 3821877 + | polysaccharide deacetylase RPE_3425 3822269 - 3821895 - | hypothetical protein RPE_3426 3823090 - 3822479 - | hypothetical protein TERM 3444 3823841 - 3823873 + G 83 -9.2 -4.42386 | gap 2, opp_overlap 3823829, overlap 3823841 3823842 ATATCTGGATCGCAC T-GCCGATC-CGGCGG GCT TCGCCGAGGTCGGCCA TTTTCTCGGTGCCAA TERM 3445 3824095 - 3824114 + G 71 -2.7 -4.57569 | opp_overlap 3824109, overlap 3824096 ACCTCTTCCTCTACA CGCGGCC CAACAA GGTCGCC TTTTTCGGCGGCTGC TERM 3446 3824345 - 3824363 + G 73 -6.6 -4.34402 | overlap 3824348 GCATGTCTTCGTCGT GGCCGAGG ACG CCTCGTTC TTTTCCTATCGCGAC TERM 3447 3824348 - 3824360 + G 80 -9.1 -4.29302 | overlap 3824345 TGTCTTCGTCGTGGC CGAGG ACG CCTCG TTCTTTTCCTATCGC RPE_3427 3823803 - 3824846 + | citrate lyase ligase RPE_3428 3824966 - 3825259 + | citrate lyase subunit gamma RPE_3429 3825256 - 3826128 + | citrate lyase, beta subunit RPE_3430 3826125 - 3827663 + | citrate lyase, alpha subunit TERM 3448 3827856 - 3827820 - g 72 -15 -2.70932 | opp_overlap 3827818 CGGCCCGGTCAAGGA CTGCGCCGCCTCGCGC GCGCT GCGCGATGCGGCGCTC GAAACGCTGAGCGGG TERM 3449 3828010 - 3827980 - g 70 -8.3 -3.9392 | gap 1, overlap 3827977 CGCGATCTCAAACAA GCG-ATGGTCGCGC TTGA GGACGACCATCCGC TCGGCCGGCTGTGGG RPE_3431 3827668 - 3828213 + | Holo-ACP synthase RPE_3432 3828224 - 3829102 + | triphosphoribosyl-dephospho-CoA synthase RPE_3433 3829228 - 3829470 + | prevent-host-death family protein RPE_3434 3829476 - 3829916 + | PilT domain-containing protein RPE_3435 3830388 - 3830140 - | hypothetical protein TERM 3450 3830212 - 3830233 + g 72 -11.6 -3.61715 | GCGATCGACCAGCAC CATGCCGG AGGCGA CCGGCATG TTGTTGGCGAGGATC lipB 3830446 - 3831150 + | lipoyltransferase TERM 3451 3831223 - 3831194 - T 73 -8.5 -4.09685 | gap 1 CGGTAGCCCCGAAAA CCGCTC-GCCTGCG CGA CGCAGCCTGAGCTG GTCGGGATGGGCCTC RPE_3437 3831460 - 3831170 - | acylphosphatase TERM 3452 3831355 - 3831332 - G 74 -8 -4.17048 | TGGCCCGGAAAACAA CGCCTCGACG CTGC CGTCGCGCCG GTTGCGGACCCAGCC RPE_3438 3832335 - 3831466 - | hypothetical protein TERM 3453 3832321 - 3832263 - G 73 -14.7 -2.87683 | gap 4, opp_overlap 3832266 3832267 AGATCGGGTCATAGA CCGACGCCGGGCGCGT-GCAGTGCGATCC GGACA GGATCGCGC-GCAACGCGCC-G-CGGCGG TTTCGCCAGGCCATC TERM 3454 3832266 - 3832321 + g 100 -20.6 -3.53224 | gap 3, opp_overlap 3832263, overlap 3832267 TCGGGTCATAGACCG ACGCCG-GGCGCGT-GCAGTGCGATCC GGACA GGATCGCGC-GCAACGCGCCGCGGCGG TTTCGCCAGGCCATC TERM 3455 3832267 - 3832320 + g 100 -24.1 -2.71791 | gap 3, opp_overlap 3832263, overlap 3832266 CGGGTCATAGACCGA CGCCG-GGCGCGT-GCAGTGCGATCC GGACA GGATCGCGC-GCAACGCGCCGCGGCG GTTTCGCCAGGCCAT RPE_3439 3834351 - 3832339 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 3456 3834672 - 3834693 + r 100 -18.7 -5.09426 | opp_overlap 3834672 TCGGCTCAAGCAAAA CGGCGGGCC GCTG GGCCCGCCG TTTTTTGGCATTCGA TERM 3457 3834693 - 3834672 - R 100 -18.7 -4.4078 | opp_overlap 3834672 TCGGCTCAAGCAAAA CGGCGGGCC GCTG GGCCCGCCG TTTTTTGGCATTCGA RPE_3440 3835296 - 3834721 - | hypothetical protein TERM 3458 3835639 - 3835621 - R 76 -8.8 -4.1822 | GCGGATTTGAACAAA CTGCGGCA AGC TGCCGAAG TCGAATAACGGTGCT TERM 3459 3835683 - 3835648 - R 71 -9.6 -3.68222 | gap 1, opp_overlap 3835652, overlap 3835649 GCCGAAGTCGAATAA CGGTGCTGGACGCGCCG TCG CCGCGCGTCCAGCTT-G TTTGCTCGTCTTACT TERM 3460 3835652 - 3835680 + r 100 -20.3 -4.04413 | opp_overlap 3835648 3835649 AAGTCGAATAACGGT GCTGGACGCGCCG TCG CCGCGCGTCCAGC TTGTTTGCTCGTCTT RPE_3441 3836099 - 3835698 - | hypothetical protein TERM 3461 3837398 - 3837421 + G 70 -11.6 -3.38201 | overlap 3837398 3837401 TGGCAATGGGTCGCC GGCTGCGGCG CCGA CGCCGCGCCC TATTTCCGGGTGTTC RPE_3442 3836219 - 3837670 + | deoxyribodipyrimidine photolyase TERM 3462 3837924 - 3837894 - g 75 -4.5 -4.58283 | overlap 3837896 GAAGGTGGCCAAAAA GGTCGCCCCCGCC AAGAA GGCGAAGAAGGCC AAGAAATCCGCTGCC RPE_3443 3837766 - 3838104 + | hypothetical protein TERM 3463 3838141 - 3838162 + T 84 -10.9 -4.18018 | gap 1 CGCCTCGCAGCGGAA GCCTCC-CGA TCA TCGCGGAGGC TTTTCGCTGCGCGGC RPE_3444 3839068 - 3838184 - | hypothetical protein TERM 3464 3838865 - 3838840 - G 74 -7.5 -4.25283 | overlap 3838841 3838852 3838853 AGCCGTGCACCAAAA TGCCAGCCACA ATGC TGTGGCCGACG CCCTCGACCGTCGGC RPE_3445 3839416 - 3840507 + | diguanylate cyclase RPE_3446 3841029 - 3840535 - | hypothetical protein TERM 3465 3841326 - 3841308 - H 73 -6.6 -4.3739 | CACTTGCGTACAAAA CTGCGAAC CCC GGCCGCAG GGACACTTTTCCCTG RPE_3447 3841360 - 3841653 + | hypothetical protein RPE_3448 3842986 - 3841622 - | periplasmic sensor signal transduction histidine kinase TERM 3466 3842739 - 3842729 - G 75 -3.2 -4.72272 | GTCCCTGACCAAAAA CCAA GGC TCGG GCAGCGCAGCTAATT RPE_3449 3843657 - 3842983 - | two component transcriptional regulator TERM 3467 3843032 - 3843053 + g 75 -15.9 -2.74605 | opp_overlap 3843007, overlap 3843030 3843026 CGAATGGTGTGGATC TCGACGCCG GCAT CGGCGTCGA TCAATTTTCGGCGCA TERM 3468 3844607 - 3844593 - R 76 -12.8 -3.53091 | ACCGCTGTTGTGAAA GCGGCG TAG CGCCGC ATAGCCCCACTTCAG RPE_3452 3845845 - 3844976 - | metallophosphoesterase RPE_3453 3846744 - 3846085 - | putative alkaline phosphatase protein RPE_3454 3847330 - 3846755 - | putative phospholipid N-methyltransferase TERM 3469 3847730 - 3847692 - g 74 -12.5 -3.58343 | gap 2, overlap 3847693 CGGACCAGCCGGAAA TGGTCACGGCGCTGCGGGC AGC GCTCGC-GCGCCATGA-CA TGCTCGTCGATCATG RPE_3455 3847658 - 3848008 + | response regulator receiver protein RPE_3456 3848546 - 3848169 - | hypothetical protein RPE_3457 3849354 - 3848566 - | lytic transglycosylase, catalytic RPE_3458 3849846 - 3849355 - | hypothetical protein TERM 3470 3849805 - 3849787 - G 70 -6.6 -4.2828 | opp_overlap 3849795, overlap 3849790 GCCGAGTGACCAAAA CAACCGCC TCC AGCGGCCG AGACGGCCACGGCCC TERM 3471 3849802 - 3849790 - G 72 -6.9 -4.26327 | opp_overlap 3849795, overlap 3849787 GAGTGACCAAAACAA CCGCC TCC AGCGG CCGAGACGGCCACGG RPE_3459 3850437 - 3849895 - | hypothetical protein TERM 3472 3850318 - 3850295 - G 77 -7.4 -4.3586 | gap 1, overlap 3850299 GGACGGATATCAAAA GCAAGTCCGCC GGT GGCAGAC-CGC AGATAGTCGACGTTG TERM 3473 3850315 - 3850299 - G 70 -10.1 -3.73858 | overlap 3850295 GGATATCAAAAGCAA GTCCGCC GGT GGCAGAC CGCAGATAGTCGACG RPE_3460 3851509 - 3850448 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3474 3850755 - 3850773 + g 70 -10.2 -3.72576 | ATCGAGCCCAGATCG GCGCTGCC TTT GGCATCGC TTTCCTCGCCGGCAA TERM 3475 3850826 - 3850840 + g 89 -5.7 -5.16237 | TGCTTTCAGCTTCTT CTGGA TATCC TCCAG TTTTTTCCTGGCCTT TERM 3476 3851068 - 3851083 + g 75 -6.8 -4.33417 | GTTGCTTGACCACAT TGGGGC GCTG GTCCCA TTTCTTCTCGATCAC TERM 3477 3851245 - 3851267 + g 83 -14.8 -3.63515 | CATCGGTGTCGCCGA CCCGGGCGAC CAC GTCGCCCGCG TTCTTGCCCATAGAC RPE_3461 3852105 - 3851506 - | hypothetical protein TERM 3478 3851768 - 3851787 + g 77 -10.7 -3.89215 | GTACGAGCGACGGTC GCCGCCT CCTCAT AGGCGGC TTTCCATTTGTCCAA TERM 3479 3851803 - 3851826 + g 80 -14.6 -3.36289 | overlap 3851813 TTTCCATTTGTCCAA CGTCTCGTCG CGCT CGGCGAGACG TTGATTGAACTCATC RPE_3462 3853973 - 3852108 - | hypothetical protein TERM 3480 3853609 - 3853643 + g 70 -11.2 -3.54741 | opp_overlap 3853590, overlap 3853588 3853630 ACGTGGCGGGTGCCC GGCGGCTGCGCCGCGG CAC TCGCGGCGTTGGCGGC TTTGGCCGCCTCGTC TERM 3481 3853806 - 3853832 + g 74 -10 -3.75897 | overlap 3853803 GGCGTTCGGCGAGGC CGGACTGGCGCG CGA CACCCCGGTCCG TTTCGGTTCGGCCTT RPE_3463 3854765 - 3854010 - | hypothetical protein RPE_3464 3855259 - 3854762 - | hypothetical protein RPE_3465 3855671 - 3855267 - | biopolymer transport protein ExbD/TolR RPE_3466 3857740 - 3855677 - | MotA/TolQ/ExbB proton channel TERM 3482 3856508 - 3856551 + g 93 -15.4 -4.13014 | gap 1, opp_overlap 3856535 TGCCAGATCTGGGCC TTGCCCGACCGCTGCGATTTT GAT GAAGCCG-AGCGGTCGGGCGA TTTTGGCAATCTGCA RPE_3467 3859530 - 3857740 - | polypeptide-transport-associated domain-containing protein RPE_3468 3860593 - 3859685 - | putative FecR TERM 3483 3860402 - 3860390 - G 71 -3.3 -4.65895 | overlap 3860391 GGCGCCACCCAAAAA CGCAC GAC GTGCC AGCCCTTGAGGGGAG RPE_3469 3860684 - 3860947 + | hypothetical protein RPE_3470 3861575 - 3861033 - | ECF subfamily RNA polymerase sigma-24 factor RPE_3471 3862448 - 3861705 - | TonB family protein TERM 3484 3862378 - 3862428 + g 84 -16.8 -3.20723 | overlap 3862381 GGATCATCGTCGTTC CAATGGGCGGTCGGCCGAGCCG GCATCTG CGGCTCGACCGAACGCCGATCG TTGAATTCCTCAGAA TERM 3485 3862381 - 3862425 + g 80 -17.1 -2.79684 | overlap 3862378 TCATCGTCGTTCCAA TGGGCGGTCGGCCGAGCCG GCATCTG CGGCTCGACCGAACGCCGA TCGTTGAATTCCTCA RPE_3472 3863122 - 3862445 - | secretin/TonB short N-terminal domain-containing protein TERM 3486 3862658 - 3862676 + g 74 -7.4 -4.2349 | overlap 3862650 3862659 TCCGTCGCGCGTCTT TGCGTTTC TCC GAAGCGCG TTTTGAATGTCCGCC TERM 3487 3862798 - 3862773 - G 77 -10.3 -3.91897 | GTGCCCAGCGACAAA TCCGCGGCGCC AGAC GGGGCGGCGGA CGGCACAATGGCCCC RPE_3473 3863875 - 3863399 - | hypothetical protein RPE_3474 3864679 - 3863921 - | hypothetical protein TERM 3488 3864197 - 3864181 - G 78 -15.1 -3.3164 | AATCCAGCGCCAGAA GGCCGGC TTC GCCGGCC TCACGGCTGGAGGCG RPE_3475 3878106 - 3864865 - | filamentous haemagglutinin outer membrane protein TERM 3489 3877772 - 3877793 + g 70 -2.1 -4.64861 | gap 1, overlap 3877780 TGCATGCCCTGCGTC GCC-CGCAGC AAC GCCGCCTGGC TTTGTTTTGCCGCCG TERM 3490 3877876 - 3877903 + g 81 -14.8 -3.57144 | gap 1 GCCCGACCCCGGCGA CGCGCCGCCGCCC CCT GGGCTGCGG-GCG TTTGCCGGTGCCGCC RPE_3476 3879224 - 3878232 - | putative FecR TERM 3491 3878327 - 3878283 - G 81 -15.2 -3.53343 | AATTTTCGCGCCAAA CGAATGCG-CGAGCTGGACGAG AAT CTCGTCCAGCTGGTCG-ATCCG GAACCGGCCGCTGAC RPE_3477 3879842 - 3879327 - | ECF subfamily RNA polymerase sigma-24 factor RPE_3478 3880540 - 3879839 - | secretin/TonB, short-like protein TERM 3492 3880908 - 3880892 - R 73 -6.5 -4.33819 | opp_overlap 3880905, overlap 3880903 ACCATTCAGAACAAA GCCGC GAACGAG GCGGC TCGGCCTCCTGGGCC RPE_3479 3884117 - 3880938 - | acriflavin resistance protein TERM 3493 3883206 - 3883223 + g 72 -6.9 -4.1964 | GCCGGCCATCACCGC CTCGACG TCCT CGCCGAG TTTTAGGATGTTGGC TERM 3494 3883511 - 3883499 - G 71 -3.3 -4.57569 | CCAGGCTGGCAAAAA TCGTC TGC GGCGA GATGCCGAGATTGGC RPE_3480 3885234 - 3884131 - | RND family efflux transporter MFP subunit TERM 3495 3884763 - 3884794 + g 78 -15.1 -3.30441 | gap 1, opp_overlap 3884761, overlap 3884781 GCGCGCGGATCAATC GGCTGCGCGCCTCC TGCGC GGCGGCGCGC-GCC TTCTCCACCGTCGTG TERM 3496 3885268 - 3885249 - H 72 -7.8 -4.18018 | gap 1 TCGCCTTACGTAAAA CCGGG-GAG CCG CCCGCCCGG AGAAAGCCGACGACA RPE_3481 3885386 - 3886090 + | TetR family transcriptional regulator TERM 3497 3886607 - 3886629 + G 72 -13.4 -3.19653 | opp_overlap 3886599 3886603 CCAACTACAAGCGGT GCCTGGCGCT GGA AGTGCCGGGC TTCATCGCCTTCTAC RPE_3482 3886285 - 3886782 + | hypothetical protein TERM 3498 3886899 - 3886862 - T 70 -12.1 -3.20723 | gap 1, opp_overlap 3886858 TTGTTACCAATGTAA GTTGGTATGAGC-GGGCG ATC CGCCCCATTCACACCAAC GAGCTTTTGATATCG TERM 3499 3887007 - 3887046 + T 100 -24.5 -3.62096 | gap 1, overlap 3887007 ATTCTTTCATGTCCG CC-CTTCGAGGCTCCCGC CGCAA GCGGGAGCCTCGAAGCGG TTTGACATCCTCAGA TERM 3500 3887007 - 3887045 + T 100 -24.7 -2.77043 | overlap 3887007 ATTCTTTCATGTCCG CCCTTCGAGGCTCCCGC CGCAA GCGGGAGCCTCGAAGCG GTTTGACATCCTCAG RPE_3483 3889240 - 3887057 - | TonB-dependent receptor TERM 3501 3888572 - 3888558 - G 77 -5.6 -4.66833 | opp_overlap 3888558, overlap 3888560 TTCGAATCTGAAAAA TCGCGG CGG CCGCCA TTCTCGGTCGCGGTG RPE_3484 3889323 - 3889721 + | hypothetical protein RPE_3485 3889827 - 3890330 + | hypothetical protein RPE_3486 3890327 - 3891379 + | periplasmic binding protein RPE_3487 3891408 - 3892403 + | transport system permease protein RPE_3488 3892400 - 3893185 + | ABC transporter related RPE_3489 3893203 - 3893826 + | hypothetical protein RPE_3490 3893959 - 3894750 + | ModE family transcriptional regulator RPE_3491 3895740 - 3897119 + | hypothetical protein RPE_3492 3897220 - 3898818 + | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3502 3900234 - 3900223 - g 73 -3.6 -4.59773 | opp_overlap 3900233 GTCCAGGTGGAAAAA CGAC TGAA GCCG GCCATAAAGGCCGTT RPE_3493 3899131 - 3900297 + | cellulose biosynthesis protein CelD RPE_3494 3901300 - 3900458 - | WecB/TagA/CpsF family glycosyl transferase RPE_3495 3902268 - 3901297 - | NAD-dependent epimerase/dehydratase TERM 3503 3902388 - 3902357 - H 86 -16.7 -3.20382 | CCTGACATGCAGTAA TCGGGGCATCGGT GGATCA ACCGATACCCCGA AGGTGGGAGTTCAAG TERM 3504 3902651 - 3902630 - g 70 -8.7 -3.95986 | gap 1, opp_overlap 3902647, overlap 3902614 3902631 CGGAACTCAAGGAAA CCCGA-GCGC TGC GCGCGTCGGA TCCCGGTCTCTCAAG RPE_3496 3902409 - 3904022 + | polysaccharide export protein RPE_3497 3904064 - 3905515 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase RPE_3498 3905549 - 3907249 + | lipopolysaccharide biosynthesis TERM 3505 3907258 - 3907272 + F 71 -5.6 -4.2679 | AAAATAGCAGCTTCA TCCGGC TTC GCCGCA TTTTGGTACCCATTG RPE_3499 3907301 - 3908542 + | hypothetical protein RPE_3500 3908517 - 3909050 + | hypothetical protein TERM 3506 3909410 - 3909447 + G 91 -13.5 -4.17023 | gap 1 CGGTGAGATCGGATT GATATCCGG-CGCCATCG CCG CAATGGCGTCCGGGTGTC TTTTGGCGTCGTTCG RPE_3501 3909228 - 3910595 + | O-antigen polymerase RPE_3502 3910767 - 3912017 + | acyltransferase 3 RPE_3503 3912609 - 3913625 + | NAD-dependent epimerase/dehydratase TERM 3507 3913792 - 3913816 + G 78 -9.9 -4.15044 | overlap 3913790 3913811 GCGATCTGACATCGG GCGTCGCCG CGATCGC CGGCGCCGC TTTGTTCGAGGCGGC RPE_3504 3913656 - 3915071 + | undecaprenyl-phosphate galactose phosphotransferase RPE_3505 3915110 - 3916471 + | UDP-glucose 6-dehydrogenase TERM 3508 3916520 - 3916491 - f 81 -15.7 -3.01712 | CGCTGCCTCCGAACA CGACGTCACGGCC TCCC GGACGCGACGTCG TCGGCCAAAACCAAA TERM 3509 3916972 - 3916986 + G 70 -6.4 -4.20084 | overlap 3916948 3916967 3916974 CATCGACGAGCGCGA TGGCAC GCC GTGCTA TTTTCAGTGGCTGAT RPE_3506 3916643 - 3917353 + | GCN5-related N-acetyltransferase RPE_3507 3917379 - 3918134 + | GCN5-related N-acetyltransferase RPE_3508 3918131 - 3919084 + | NAD-dependent epimerase/dehydratase RPE_3509 3919081 - 3920355 + | glycosyl transferase, group 1 RPE_3510 3920352 - 3921164 + | glycosyl transferase family protein RPE_3511 3922120 - 3923994 + | type I secretion system ATPase RPE_3512 3923991 - 3925292 + | HlyD family type I secretion membrane fusion protein RPE_3513 3925692 - 3927146 + | hemolysin-type calcium-binding region TERM 3510 3927208 - 3927164 - T 75 -13.7 -3.07895 | opp_overlap 3927171, overlap 3927168 3927169 TTCAGTCGGAACACA CCAATGGCGTCG-TGCCCGGC CTCGT GCCGGGCATCGACGTC-TTGA GGGCAGACGCGGCGG TERM 3511 3927205 - 3927168 - T 77 -13.4 -3.37493 | gap 1, opp_overlap 3927171, overlap 3927164 3927169 GTCGGAACACACCAA TGGCGTCG-TGCCCGGC CTCGT GCCGGGCATCGACGTCT TGAGGGCAGACGCGG TERM 3512 3927204 - 3927169 - T 83 -16.9 -2.62175 | gap 1, opp_overlap 3927171, overlap 3927168 3927164 TCGGAACACACCAAT GGCGTCG-TGCCCGGC CTCGT GCCGGGCATCGACGTC TTGAGGGCAGACGCG TERM 3513 3927171 - 3927202 + T 90 -18.1 -3.01712 | gap 1, opp_overlap 3927169 3927168 3927164 GGAACACACCAATGG CGTCG-TGCCCGGC CTCGT GCCGGGCATCGACG TCTTGAGGGCAGACG RPE_3514 3928221 - 3927415 - | two component LuxR family transcriptional regulator RPE_3515 3928994 - 3928401 - | response regulator receiver protein RPE_3516 3931915 - 3930329 - | transposase IS66 TERM 3514 3931600 - 3931622 + g 72 -5.4 -4.4078 | GCAGCGGGCGTCGGG GCGGGCGTGG AGC CTGTGCACGC TTTTCCTTGGCGGCC RPE_3517 3932336 - 3931989 - | IS66 Orf2 family protein TERM 3515 3932129 - 3932113 - G 77 -7.2 -4.53303 | GACGGCCACAGAAAA CGGCCG CGCTC CAGCCG CTTCGTGAACAGACA RPE_3518 3932731 - 3932333 - | transposase IS3/IS911 family protein TERM 3516 3932458 - 3932489 + g 70 -11.6 -3.43203 | gap 1, overlap 3932422 TGGCTGGCGGCACCG GCC-CCATCCGGCGA TCG TCTTCGGATGGCGGC TTCGTATTGTCCTCG RPE_3519 3933354 - 3933025 - | hypothetical protein TERM 3517 3933668 - 3933683 + G 75 -6.8 -4.30719 | overlap 3933670 GGGACGGCCGGATTC TGGGCG GCGA CGCCTA TTTGTTCTACGCCGG RPE_3520 3933574 - 3933921 + | hypothetical protein TERM 3518 3933937 - 3933903 - T 76 -10.7 -3.76492 | gap 1 GGCAACGCTACGAAA GC-TCGCCAACACGGA CTGA TCCGTGCCGGCGCCGC AGGGCAGCTTAGGCC RPE_3521 3935637 - 3933946 - | methyl-accepting chemotaxis sensory transducer TERM 3519 3934205 - 3934223 + g 73 -9.6 -3.95584 | GCGATCTCCGACATC TTGGCGAT GGT GTCGCCAA TTTCCTTGATGGCGC TERM 3520 3935957 - 3935943 - R 71 -11.4 -3.51232 | opp_overlap 3935941, overlap 3935939 TTCCCGGGAAATCAA CTCGCC AAG GGCGAG GATTGATACCCACTT RPE_3522 3937675 - 3935978 - | methyl-accepting chemotaxis sensory transducer TERM 3521 3938157 - 3938127 - H 73 -6.3 -4.27617 | gap 1 TACAGCTTATCAAAA TACCACCAAACCGA ATCA TCGATTTG-CGGTA GGTGACGGCTGGGCG RPE_3523 3938388 - 3939374 + | AraC family transcriptional regulator RPE_3524 3942093 - 3939409 - | multi-sensor signal transduction histidine kinase TERM 3522 3942139 - 3942165 + r 90 -18 -3.01791 | opp_overlap 3942130 AATATAGTCCGACTT CCCGTCCAGGGG GAA CACCTGGACGGG TCTTGGAGGCCAAAT RPE_3525 3944377 - 3942197 - | Pyrrolo-quinoline quinone TERM 3523 3942660 - 3942634 - G 76 -15.1 -3.17797 | TCGAGACATATTGAA CGCCGTCGACC ATGTA GGTCGCCGGCG CCGCCACCGCGCCGG TERM 3524 3942854 - 3942869 + g 76 -6 -4.56597 | opp_overlap 3942853, overlap 3942851 GTCCCACGCCAACAG CCGGCC GAAC GGCAGG TTTTTCGGCGGCACG TERM 3525 3943144 - 3943190 + g 72 -13.1 -3.16881 | gap 1 TGGAATCGTAGCCGG CGGCCCAGTTCACCTCGACGAA ATTC TTCGCCGAGATGAACTTG-CCG TTGGTGCGATCGATC RPE_3526 3945327 - 3944527 - | NUDIX hydrolase TERM 3526 3945386 - 3945433 + r 93 -20.1 -3.06183 | gap 1, opp_overlap 3945386 3945391 3945395, overlap 3945391 3945395 GTCATTGCGAGCGAA GCGAAGCAATCCAGG-GCTCCA GAACG TGTGGCTCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 3527 3945433 - 3945386 - R 90 -17.9 -3.06183 | gap 1, opp_overlap 3945386 3945391 3945395, overlap 3945391 3945395 GTCATTGCGAGCGAA GCGAAGCAATCCAGG-GCTCCA GAACG TGTGGCTCCTGGATTGCTTCGC TTCGCTCGCAATGAC RPE_3527 3946449 - 3945499 - | dihydrodipicolinate synthetase TERM 3528 3946692 - 3946647 - R 77 -13.2 -3.57144 | gap 1 CGCGTGATGCGGAAA CGCCCCCTCACCCCGACCCTC TCCCC GCAAG-CGGGGAGAGGGAGCG TGCGGCAATCGCGGC RPE_3528 3947579 - 3946719 - | dehydratase TERM 3529 3946862 - 3946841 - G 70 -3.5 -4.56597 | overlap 3946842 TCTCGCCCGGAAAAA CCGGCGCGG AGAA CCGTACCGC GTGGCGCTTGAACGC TERM 3530 3947190 - 3947132 - G 72 -13.7 -3.04398 | gap 2, opp_overlap 3947182, overlap 3947131 TCGGTCCGCCAAAAC CGCCATCGCCACGGGCGAAGCGCGACGCC ACC AGCGTCGC-CAGCGCC-GCGCCGTCGGCG TCGCGCAGCACGGTC TERM 3531 3947617 - 3947630 + r 73 -8.1 -3.97645 | TCGTGGCGGCGCCTT CTCCC ATTC GGGAG TTCTTCTCTGTTGAT TERM 3532 3947738 - 3947791 + r 88 -17 -3.09635 | gap 2, opp_overlap 3947743 3947748 3947752, overlap 3947744 3947748 3947752 GTCCCGTCATTGCGA GCGAAGCGAAGCAATCCATTGCTCCG AGCA CGGAACACTGGATTGCTTCG-T-CGC TTCGCTCCTCGCAAT TERM 3533 3947788 - 3947743 - R 93 -19.9 -3.06183 | opp_overlap 3947738 3947744 3947748 3947752, overlap 3947748 3947752 GTCATTGCGAGCGAA GCGAAGCAATCCATTGCTCCG AGCA CGGAACACTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 3534 3947744 - 3947787 + r 91 -21.2 -2.55544 | opp_overlap 3947743 3947748 3947752, overlap 3947738 3947748 3947752 TCATTGCGAGCGAAG CGAAGCAATCCATTGCTCCG AGCA CGGAACACTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 3535 3947748 - 3947783 + r 80 -14.8 -3.22388 | opp_overlap 3947748 3947743 3947752, overlap 3947744 3947738 3947752 TGCGAGCGAAGCGAA GCAATCCATTGCTCCG AGCA CGGAACACTGGATTGC TTCGTCGCTTCGCTC TERM 3536 3947783 - 3947748 - R 89 -17 -3.19192 | opp_overlap 3947744 3947738 3947748 3947752, overlap 3947743 3947752 TGCGAGCGAAGCGAA GCAATCCATTGCTCCG AGCA CGGAACACTGGATTGC TTCGTCGCTTCGCTC RPE_3529 3951308 - 3947820 - | indolepyruvate ferredoxin oxidoreductase TERM 3537 3949112 - 3949096 - G 70 -6.5 -4.16842 | GCCATGCCCAACAAA GCGCCGA TGG TCAGCAC ACCGGTGCCGCCGAC TERM 3538 3949438 - 3949461 + g 72 -8.8 -4.07568 | gap 1 GCCGGATCTTCCAGC GTGCCG-CGCT TGC GGCGGCGGCGC TTTTCGGCGGCGCAG TERM 3539 3949676 - 3949716 + g 80 -15.3 -3.31248 | GCTGCGGCGACAGCT CGCCGTCGTGGCGCTGGCC GCC GGTCATCGCCACCGCGTCG TTGTAGAGGATCTTG TERM 3540 3951331 - 3951367 + H 78 -9.9 -4.09243 | overlap 3951353 TCGTGGCTCCCTGAC TCGCGGCCCCGCCCAGC TAC GCCCGGCGCGATCGCGA TTTTGCGCCAGTCTA TERM 3541 3951838 - 3951801 - g 72 -6.8 -4.1899 | opp_overlap 3951807, overlap 3951777 CGAGCCGACCGAAAA CCGTATCAGCGGCGGC CGGATC GCGGCCGCCATTGCGG CCGTCGTGGTGCTGA RPE_3530 3951649 - 3952050 + | hypothetical protein TERM 3542 3952069 - 3952088 + F 100 -16.4 -4.08216 | ATCCTCTCCGCAAGG CGGGCGCC AGAC GGCGCCCG TTTTGCGAAGGATCG RPE_3531 3952271 - 3952534 + | hypothetical protein RPE_3532 3953409 - 3952600 - | hypothetical protein RPE_3533 3954073 - 3953525 - | hypothetical protein TERM 3543 3953785 - 3953816 + g 89 -15 -4.11484 | overlap 3953786 CCTTGATCTTGGCGA AGCTGGCGCCGGGG CAGG CCTCGGCGCCCGCC TTTTCCAGCCTTGCG TERM 3544 3953786 - 3953815 + g 90 -18.5 -3.06569 | overlap 3953785 CTTGATCTTGGCGAA GCTGGCGCCGGGG CAGG CCTCGGCGCCCGC CTTTTCCAGCCTTGC TERM 3545 3954126 - 3954103 - H 81 -3.7 -4.99134 | overlap 3954106 3954107 ATCGGAAACCAAAAA GGATCGGCC GCGCGG GGCCGGTAC GAAAATCGCCCCATT RPE_3534 3954403 - 3954687 + | hypothetical protein TERM 3546 3954780 - 3954761 - T 85 -15 -3.63805 | opp_overlap 3954761 AGTCCAGACGGCAAA GACCCCGC GCCA GCGGGGTC TTTTTGTTTGCCCGC TERM 3547 3954761 - 3954780 + T 100 -15 -5.27335 | opp_overlap 3954761 AGTCCAGACGGCAAA GACCCCGC GCCA GCGGGGTC TTTTTGTTTGCCCGC RPE_3535 3956955 - 3954814 - | DNA/RNA non-specific endonuclease TERM 3548 3955868 - 3955832 - G 95 -10.7 -4.46212 | overlap 3955833 TCGGCGATCACAAAA CTCTCGGCGGCAGCGAC CGA GCGGTTGCCGCCGGGAA CCACCCGGCCGTCGG RPE_3536 3957489 - 3958730 + | glycerophosphoryl diester phosphodiesterase RPE_3537 3958898 - 3959128 + | hypothetical protein RPE_3538 3959121 - 3959459 + | hypothetical protein RPE_3539 3959695 - 3960126 + | hypothetical protein RPE_3540 3960535 - 3960260 - | filamentation induced by cAMP protein Fic TERM 3549 3960505 - 3960551 + g 73 -12.4 -3.41602 | gap 1, opp_overlap 3960493 3960509, overlap 3960491 AAAGCCAATTTCTAC GGAATTGGCGCTGTCG-TGAA CTCGCA TTCATCGACAGCGCCGCCTCC TTGTCCTCACATCGG RPE_3541 3962090 - 3960558 - | carboxyl transferase RPE_3542 3963228 - 3962410 - | Beta-lactamase TERM 3550 3962538 - 3962564 + g 74 -12.2 -3.53012 | overlap 3962546 TCTCGGCCCAGCCGA CCAGCCAGCCGA GCG TCGGCTTGCCGG TTTCGGCGCCCAACA TERM 3551 3963264 - 3963294 + r 71 -12.6 -3.02511 | opp_overlap 3963254 3963282 3963285, overlap 3963254 CGGAAGCAGCAGTTG CGCTGCTTCATGGT GAA ACGATGACGCAGCG TCTTGGACGAGTCCA TERM 3552 3963360 - 3963337 - R 84 -16 -3.06183 | gap 1, overlap 3963351 GTCATTGCGAGCCAA CGGGTCGGCGC AAA GCGCCG-CCCG ATGACAGGCTCCGCG TERM 3553 3963378 - 3963415 + r 91 -18.5 -3.18681 | opp_overlap 3963367 3963382, overlap 3963382 GACAGGCTCCGCGAA GCAATCCATGGGCTCCG AGCA CGGGGCTCCTGGATTGC TTCGTCGGCTTAGCC TERM 3554 3963382 - 3963411 + r 74 -12.1 -3.40639 | opp_overlap 3963382 3963367, overlap 3963378 GGCTCCGCGAAGCAA TCCATGGGCTCCG AGCA CGGGGCTCCTGGA TTGCTTCGTCGGCTT RPE_3543 3963732 - 3963466 - | type III secretion protein RPE_3544 3965465 - 3963729 - | hypothetical protein RPE_3545 3966302 - 3965523 - | ATP12 ATPase RPE_3546 3966767 - 3966315 - | hypothetical protein RPE_3547 3968190 - 3966814 - | RluA family pseudouridine synthase TERM 3555 3967384 - 3967401 + g 70 -2.5 -4.62872 | overlap 3967383 GGTCTCCTTGTCGAG CCGATGC ACCA GCCGCGG TTTTTGGCCCTTGCT TERM 3556 3968096 - 3968126 + g 72 -8.2 -4.07687 | gap 1, overlap 3968097 TTGGATGAAAGGCTC TTGGCCGCGCCGG GCTTGG CCGGC-CGGCCGC TTTTGGCGGGGCGAT TERM 3557 3969430 - 3969410 - g 70 -4 -4.46212 | gap 1, opp_overlap 3969428, overlap 3969412 GGTGCTAGCAGAAAA GC-GCATAG TTCT CTACGCTGC CCGAGGCGCAATTCT RPE_3548 3968910 - 3970763 + | hypothetical protein RPE_3549 3970933 - 3971157 + | nitroreductase TERM 3558 3971182 - 3971169 - f 76 -9.5 -4.08216 | overlap 3971178 GTAGGGTGGGCAAAA GGCGC GAAA GCGCC GTGCCCACGCGCCCT TERM 3559 3971345 - 3971380 + F 95 -19.8 -3.16564 | CGCGAGGCGCGCGGG CGGCGAACCCGGAATC TCGA GATTCCGGGTCCGCTG TTGGTCGGCTGACGC TERM 3560 3971817 - 3971851 + F 89 -17.3 -3.16564 | gap 1 CGAAGGCGCGCGGGC G-GCGAGCCCGGAATC TCGA GATTCCGGGTTCGCAC TTGGTCGGCTGACGC RPE_3550 3972012 - 3972689 + | nitroreductase RPE_3551 3973314 - 3972706 - | BLUF domain-containing protein TERM 3561 3973674 - 3973636 - R 100 -24.1 -2.75481 | gap 1 GCCGAAGGCGAACGA GCG-GCGAACCCGGAATC TCGG GATTCCGGGTTCGCACGC CGCCCGGCTGCGCCG RPE_3552 3974367 - 3973729 - | hypothetical protein RPE_3553 3974802 - 3974383 - | hypothetical protein RPE_3554 3976083 - 3975001 - | choloylglycine hydrolase TERM 3562 3975420 - 3975370 - G 74 -12.5 -3.53444 | gap 1, opp_overlap 3975372 3975374 3975375, overlap 3975358 CGAGGCGCGCGCAAA GCGATCGGCGGCGCGGTTGGTGCC CGGC AGCATCA-CTGTGCCGCCGATCTC CTTCCAATATTCGTC TERM 3563 3975372 - 3975418 + g 93 -19.6 -2.75535 | gap 1, opp_overlap 3975358 3975370, overlap 3975374 3975375 AGGCGCGCGCAAAGC GATCGGCGGCGCGGTTGGTGC CCGGCA GCATCA-CTGTGCCGCCGATC TCCTTCCAATATTCG TERM 3564 3975374 - 3975416 + g 79 -16.4 -2.92018 | gap 1, opp_overlap 3975358 3975370, overlap 3975372 3975375 GCGCGCGCAAAGCGA TCGGCGGCGCGGTTGGTGC CCGGCA GCATCA-CTGTGCCGCCGA TCTCCTTCCAATATT RPE_3555 3977514 - 3976306 - | extracellular ligand-binding receptor TERM 3565 3976513 - 3976558 + g 73 -11.2 -3.65046 | gap 3 GCACTGCTTCAGCAC CACCACCAGCGC-CT-CGGCCAC GGT GTAGCCGTAGAGCGC-GGCGGTG TTGTTGAGATCGACC TERM 3566 3977851 - 3977820 - R 71 -10.9 -3.44848 | gap 1, overlap 3977818 GCGTCGGAGCAAAGA CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG CGTGGATAGGTTGGT RPE_3556 3979257 - 3977929 - | recombination factor protein RarA TERM 3567 3978403 - 3978388 - G 70 -3.9 -4.56597 | GCGTCGCGCCAAAAA CAGCG GGTCCT CGCCG GCGTCGAACATGCGG TERM 3568 3979364 - 3979422 + r 88 -17.4 -3.05816 | gap 2 GGCCGGCCCTCTTGG GCCG-GACGGGTGGGGGT-ACCGCGAGC ACTGC GCCTGTGGCCACCCCCACCCGGCCCGGC TTCGCTGCGCGATGC RPE_3557 3980884 - 3979490 - | peptidase S1C, Do TERM 3569 3980972 - 3980943 - H 86 -15.7 -3.65812 | gap 1 TTGCTGCGAATAGAA GTGACCGCCGGGGC GGC GCCCCG-CGGTCCC GACTTCCCGCGATCG TERM 3570 3981275 - 3981240 - g 72 -4.7 -4.52589 | gap 3, overlap 3981241 3981242 CCGGTCGACACAAAA GT-G-CGCCGCCGCGCCG AAC CGGCG-GATGGCGGCTAC AAGGTGCTGGGCTAC RPE_3558 3981096 - 3982109 + | NADPH:quinone reductase TERM 3571 3982164 - 3982130 - T 77 -13.5 -3.3164 | opp_overlap 3982130 AAGCCAGCGGCACAA CCACGGCGTCGACCT TGACT AGGTCGGCGCGGCGG TTGCTTCGGCATAGG TERM 3572 3982130 - 3982164 + T 77 -13.5 -3.34895 | opp_overlap 3982130 AAGCCAGCGGCACAA CCACGGCGTCGACCT TGACT AGGTCGGCGCGGCGG TTGCTTCGGCATAGG RPE_3559 3982612 - 3982148 - | glutathione-dependent formaldehyde-activating, GFA RPE_3560 3983430 - 3982636 - | short-chain dehydrogenase/reductase SDR TERM 3573 3982665 - 3982684 + g 81 -16.4 -3.14211 | GCAGCAGCCCGCCTT CGGCGCGG AGCG CCGCGCCG TTGGTGGCGGAGGCT TERM 3574 3982766 - 3982754 - G 75 -9.1 -4.08767 | TCCACGGTCGCAAAA CGCTG GAT CAGCG AGCCGGGGCGGTGCT TERM 3575 3983519 - 3983538 + r 100 -16.4 -4.27584 | opp_overlap 3983519 AGCCCCACAAAAAAA GCGGCGCC CGGA GGCGCCGC TTTTGAATTCCGGAT TERM 3576 3983538 - 3983519 - R 100 -16.4 -5.61596 | opp_overlap 3983519 AGCCCCACAAAAAAA GCGGCGCC CGGA GGCGCCGC TTTTGAATTCCGGAT rplQ 3983975 - 3983565 - | 50S ribosomal protein L17 TERM 3577 3984057 - 3984110 + r 84 -16.4 -3.10056 | gap 1, opp_overlap 3984070, overlap 3984077 3984079 GTTCGCCCGGGGGAA GCGAGTAGCGAAATAGCGAATAG CGAGTAGAA CTATTCGCTA-TTCGCTACTCCC TATTCGCTCAGTAGT TERM 3578 3984105 - 3984070 - R 93 -16.4 -3.69094 | opp_overlap 3984057 3984077 3984079 AAGCGAGTAGCGAAA TAGCGAATAGCGAGTA GAAC TATTCGCTATTCGCTA CTCCCTATTCGCTCA RPE_3562 3985137 - 3984118 - | DNA-directed RNA polymerase subunit alpha TERM 3579 3985234 - 3985208 - R 100 -17.2 -3.85184 | overlap 3985200 3985209 CGCAAAATATCGAAA CCCGCCGGCAGC CGT GCCGCCGGCGGT TGAAAAGATTAGACC TERM 3580 3985233 - 3985209 - R 93 -20.7 -2.90387 | overlap 3985208 3985200 GCAAAATATCGAAAC CCGCCGGCAGC CGT GCCGCCGGCGG TTGAAAAGATTAGAC RPE_3563 3985632 - 3985243 - | 30S ribosomal protein S11 TERM 3581 3985697 - 3985753 + r 100 -26.9 -3.10677 | opp_overlap 3985692 3985706, overlap 3985699 ACCGATAACAGCGAG TAGCGAATAGTGAGTAGCGAATAGAGG AGG CCCCTATTCGCTACTCACCATCCGCTA TTCGCTCGCTTAATT TERM 3582 3985699 - 3985751 + r 100 -25.1 -3.1085 | opp_overlap 3985692 3985706, overlap 3985697 CGATAACAGCGAGTA GCGAATAGTGAGTAGCGAATAGAGG AGG CCCCTATTCGCTACTCACCATCCGC TATTCGCTCGCTTAA TERM 3583 3985744 - 3985706 - R 100 -25.6 -3.10975 | opp_overlap 3985699 3985697, overlap 3985692 AGCGAGTAGCGAATA GTGAGTAGCGAATAGAGG AGG CCCCTATTCGCTACTCAC CATCCGCTATTCGCT rpsM 3986135 - 3985767 - | 30S ribosomal protein S13 TERM 3584 3986312 - 3986328 + r 86 -7.9 -4.75404 | opp_overlap 3986288, overlap 3986285 3986311 GTTTCGTCAACCGCG GCTAGGC CTT GCCTCGC TTTTTCGTGACCTTT adk 3987383 - 3986313 - | adenylate kinase TERM 3585 3986433 - 3986469 + g 71 -2.9 -4.66833 | gap 1, overlap 3986424 3986433 3986435 CTTGGCGGCGGTTTT GCCCTTCGCGCCAGAC GCCTTG GTCTTGC-CGGGGGCC TTTTTCGCCTTGGCC TERM 3586 3986948 - 3987006 + g 83 -12.8 -4.07568 | overlap 3986940 GCCGCTTCGCCAACG CCTCGGCGTTGTCATCCGGGCGCGGCTC TTC GCCCCGCGCCCGCATCTCGGCGACGCGG TTTTCCACCCGCGCC secY 3988711 - 3987380 - | preprotein translocase subunit SecY TERM 3587 3988481 - 3988471 - G 79 -6.8 -4.62069 | opp_overlap 3988471 TGTTCAGCGCAAAAA TCGC CAT GCGA TTGATGCCGCCGCCG rplO 3989339 - 3988854 - | 50S ribosomal protein L15 TERM 3588 3989236 - 3989251 + g 74 -7.5 -4.19238 | overlap 3989218 GCGGTCTGGCCCTTG CCGCC ACGACC GGCGG TTTTGCCCTTGCCGG rpmD 3989546 - 3989352 - | 50S ribosomal protein L30 rpsE 3990206 - 3989634 - | 30S ribosomal protein S5 TERM 3589 3989901 - 3989891 - G 72 -8.2 -4.0641 | opp_overlap 3989890, overlap 3989892 CGGCACGCAGATAAA CGCG GCC CGCG CCGTGGCGGCCGGCG rplR 3990634 - 3990272 - | 50S ribosomal protein L18 rplF 3991179 - 3990646 - | 50S ribosomal protein L6 TERM 3590 3991147 - 3991159 + g 72 -4.7 -4.56775 | GGTAACTCCCGAGGG GACCG TGA CGGGC TTTTTGCCAACACGT rpsH 3991591 - 3991193 - | 30S ribosomal protein S8 rpsN 3991908 - 3991603 - | 30S ribosomal protein S14 rplE 3992509 - 3991952 - | 50S ribosomal protein L5 TERM 3591 3992181 - 3992154 - G 74 -12.6 -3.53811 | TTCAGGCCGCGGAAA TCTCGGACGCGC GGCA GCGCGACCGTGA TCAAGCGGTCGATGA TERM 3592 3992309 - 3992345 + g 83 -8.6 -4.64598 | gap 1, opp_overlap 3992319, overlap 3992309 GATCGGCTTCTGGCC GGC-GATCAGACCGAGG TCGG CCGCGGCCTGCTCGGCC TTTTTACGGTCGTTC rplX 3992816 - 3992502 - | 50S ribosomal protein L24 rplN 3993184 - 3992816 - | 50S ribosomal protein L14 rpsQ 3993471 - 3993223 - | 30S ribosomal protein S17 RPE_3578 3993687 - 3993481 - | 50S ribosomal protein L29 TERM 3593 3993531 - 3993560 + g 71 -12.1 -3.22475 | gap 1, overlap 3993529 3993532 TCTTGATACGTGCGA TCTCGCGGC-GGGC TTC GCGCAGCCGCGAGG TGTTCTCGAGCTGCC rplP 3994110 - 3993697 - | 50S ribosomal protein L16 rpsC 3994841 - 3994143 - | 30S ribosomal protein S3 TERM 3594 3994553 - 3994602 + g 73 -10.7 -3.63515 | overlap 3994554 TGATCACGACGTCGG AGGCGGTGATGTCGGCAACCTTC TTGC GAAGCTTGTCGATGTCGGCGCCC TTCTTGCCGATCACG rplV 3995251 - 3994865 - | 50S ribosomal protein L22 rpsS 3995540 - 3995262 - | 30S ribosomal protein S19 TERM 3595 3995475 - 3995487 + g 72 -4.7 -4.56597 | overlap 3995465 3995476 ACGGCCGGACGCGCG CGCGG CAT CCGCC TTTTTCAGCAGAGAG rplB 3996386 - 3995553 - | 50S ribosomal protein L2 rplW 3996699 - 3996400 - | 50S ribosomal protein L23 rplD 3997316 - 3996696 - | 50S ribosomal protein L4 rplC 3998040 - 3997318 - | 50S ribosomal protein L3 rpsJ 3998403 - 3998095 - | 30S ribosomal protein S10 RPE_3588 3999694 - 3998504 - | elongation factor Tu RPE_3589 4001805 - 3999733 - | elongation factor G RPE_3590 4002306 - 4001836 - | 30S ribosomal protein S7 rpsL 4002693 - 4002322 - | 30S ribosomal protein S12 RPE_3592 4004574 - 4003375 - | hypothetical protein RPE_3593 4004676 - 4005851 + | monooxygenase, FAD-binding protein RPE_3594 4007963 - 4005870 - | ABC transporter related TERM 3596 4006208 - 4006266 + g 72 -11.7 -3.51934 | gap 2 TGGCGCGCGCGATGG CGATGCGCTGG-CGTTGGCCGC-CCGACA GCG TGTCGCCGCGCTCGCCGACCAGCGTGTCG TATTTCTGCGGCAGG RPE_3595 4010166 - 4008109 - | methyltransferase type 11 TERM 3597 4008526 - 4008536 + g 72 -8.2 -4.14739 | GTTGAATTCCTGCAG CGCC GCC GGCG TTTTCGCGTGAATGC TERM 3598 4010189 - 4010218 + r 74 -10 -3.70149 | gap 1, opp_overlap 4010181, overlap 4010190 TTTCAAACGCAGCAG GGCCGT-GCTGCC CGGCC GGCAGCGACGGCG TTTCCATCCTATAGA TERM 3599 4010190 - 4010217 + r 72 -13.5 -2.81768 | gap 1, opp_overlap 4010181, overlap 4010189 TTCAAACGCAGCAGG GCCGT-GCTGCC CGGCC GGCAGCGACGGC GTTTCCATCCTATAG TERM 3600 4010433 - 4010416 - R 100 -14.1 -4.65895 | opp_overlap 4010416 CTCTTCACGCAAAAA GGCCGGC TTTC GCCGGCC TTTTCAGAGGATTGA TERM 3601 4010416 - 4010433 + r 90 -14.1 -4.09739 | opp_overlap 4010416 CTCTTCACGCAAAAA GGCCGGC TTTC GCCGGCC TTTTCAGAGGATTGA RPE_3596 4014675 - 4010473 - | DNA-directed RNA polymerase subunit beta' TERM 3602 4011680 - 4011717 + g 74 -14.9 -3.06796 | gap 1, overlap 4011675 4011704 TCGCCCTCGTCGACC CGCATCCGCGCGCCGTAT TGG ATACGGTGCGTGGC-GCG TTCGGTGCCGTCGGC TERM 3603 4013726 - 4013782 + g 73 -6.4 -4.41494 | gap 2, overlap 4013729 TTGGCGCCGGTGATG ACGCG-GCCGC-GGCGGCCGTTGTCG AACAGCG CGTCGACGGCCTCCTGCAGCATGCGC TTTTCGTTGCGGATG TERM 3604 4013729 - 4013743 + g 71 -12.8 -3.28712 | overlap 4013726 GCGCCGGTGATGACG CGGCCG CGG CGGCCG TTGTCGAACAGCGCG TERM 3605 4014849 - 4014830 - R 91 -16.4 -3.57263 | opp_overlap 4014829 4014831 AGGGTGAGGTCGAAA GGGCGGCG CGCG CGCCGCCC GCCGTCTGTTACTCG TERM 3606 4014831 - 4014855 + r 80 -14.9 -3.13403 | opp_overlap 4014830, overlap 4014829 GGGTGAGGTCGAAAG GGCGGCGCGCG CGC CGCCCGCCGTC TGTTACTCGGCCGCC rpoB 4018979 - 4014858 - | DNA-directed RNA polymerase subunit beta TERM 3607 4016239 - 4016250 + g 70 -2.2 -4.63932 | gap 1 TTTTCGCCGAAGATG GC-GC GCA GCAGC TTTTCTTCCGGCGTC TERM 3608 4019361 - 4019409 + r 70 -12.9 -2.91264 | opp_overlap 4019356 4019388 4019405, overlap 4019364 4019407 4019408 TCGCCAGGAACTTCG GGGCACCGCCGCGGCGGGCCGGT AAA ACCGCCTCGCCGCAGCAATGTCG TGTGTCGGTCCCGGC TERM 3609 4019364 - 4019406 + r 78 -15.4 -2.7035 | opp_overlap 4019356 4019388 4019405, overlap 4019361 CCAGGAACTTCGGGG CACCGCCGCGGCGGGCCGGT AAA ACCGCCTCGCCGCAGCAATG TCGTGTGTCGGTCCC TERM 3610 4019408 - 4019458 + r 74 -14.7 -2.61274 | opp_overlap 4019356 4019405 4019454, overlap 4019361 4019407 TCGCCGCAGCAATGT CGTGTGTCGG-TCCCGGCGGGCGCG AGG CGCGCC-GCCGGGAATCGAACCAAG CTTACTTGAGCTCGA rplL 4019831 - 4019460 - | 50S ribosomal protein L7/L12 TERM 3611 4019725 - 4019745 + g 75 -4.6 -4.63218 | gap 1, overlap 4019728 GCCACCGCAACGGCG GCGGCGGCG GAGA CGCC-CCAC TTTTCTTCAAGCAAC rplJ 4020399 - 4019881 - | 50S ribosomal protein L10 TERM 3612 4020925 - 4020940 + H 80 -4.6 -4.8622 | CTTAACGAGTCTTAC CCGCGT TGCC AAGCGG TTTTTAGTTCCCGGC RPE_3600 4021271 - 4022182 + | hypothetical protein TERM 3613 4022249 - 4022192 - f 73 -11.2 -3.55444 | gap 2, opp_overlap 4022172 4022234, overlap 4022173 TTCTGAGCGTCCAAA CGCCG-TCATTCCGGG-GCGCGAGCAGC GCAA GCTGCGCGCGAACCCGGAATCTGCCGCG CGTGTCGCAGGCCGC TERM 3614 4022234 - 4022285 + F 100 -28.9 -3.14963 | gap 1, opp_overlap 4022192, overlap 4022282 CAAGCTGCGCGCGAA CCCGGAATCT-GCCGCGCGTGTCG CAGGC CGCCGCGCGCGGCGAGATTCCGGG TTCGCTCGTTCTGCG RPE_3601 4022401 - 4022670 + | hypothetical protein RPE_3602 4023403 - 4022750 - | hypothetical protein TERM 3615 4022986 - 4023001 + g 70 -10.4 -3.66178 | GCCAGGCCATCTCGA TGGGCG CCAG CGCCCA TTTCGGATTGCCCGG RPE_3603 4025568 - 4023400 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding RPE_3604 4026036 - 4025572 - | 2Fe-2S iron-sulfur cluster binding domain-containing protein RPE_3605 4027152 - 4026202 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 3616 4027145 - 4027159 + g 72 -5.6 -4.34402 | GTGAGCAGCACCGTG TCGGGC ATC GCGCGA TTTTCGTATCGAGAG TERM 3617 4027215 - 4027186 - R 100 -18.7 -4.67651 | opp_overlap 4027183 4027186 AGAGGTCAAAACAAA GGGGCAAAACCGG TTTC CCGATTTTGCCCC TGGTTTGCCACAACA TERM 3618 4027186 - 4027215 + r 83 -16.5 -2.90496 | opp_overlap 4027186, overlap 4027183 AGAGGTCAAAACAAA GGGGCAAAACCGG TTTC CCGATTTTGCCCC TGGTTTGCCACAACA rplA 4027937 - 4027245 - | 50S ribosomal protein L1 rplK 4028371 - 4027943 - | 50S ribosomal protein L11 TERM 3619 4028384 - 4028403 + r 71 -9.2 -3.73107 | overlap 4028380 4028385 CATCTACAACTCCTG TTGCCGGC GCCT GCCGGCGG TTTCAGGTTTCGTGG TERM 3620 4028609 - 4028552 - R 79 -15.2 -2.93073 | gap 3, overlap 4028549 4028550 4028582 TTTTGCGAAGAAGGA TGGATTGCCGGG-TCAAGCCCGGCAATGA CAG TCACTGCCGGG-TCGAGCCCGGCAATG-A CATTACGCTCAGACC TERM 3621 4028610 - 4028582 - R 83 -16.8 -2.90194 | overlap 4028549 4028550 4028552 AGCCCGGCAATGACA GTCACTGCCGGG TCGAG CCCGGCAATGAC ATTACGCTCAGACCT nusG 4029148 - 4028618 - | transcription antitermination protein NusG secE 4029361 - 4029170 - | preprotein translocase subunit SecE TERM 3622 4029249 - 4029235 - G 79 -2.1 -5.00467 | gap 1, overlap 4029237 CGAAGAAGAAGAAAA TGGACG ACAG CG-CCA CCATGATGAACACCA TERM 3623 4029469 - 4029486 + H 83 -7.7 -4.64861 | gap 1, opp_overlap 4029468 4029465 CCCTTTACCAAGGAT GAGC-CGC CAA GCGGGCTC TTTCTTTTGGGAAAA TERM 3624 4029847 - 4029884 + H 85 -6.1 -5.08088 | gap 1, overlap 4029849 CCGCGACTGAAGCCT GTCGCACCACGCCGC-GA CCA TCAGCGGCTTGGCGAGCC TTTTTCTTCCCGATT RPE_3610 4029937 - 4031022 + | nuclease TERM 3625 4031428 - 4031438 + F 78 -6.8 -4.56775 | opp_overlap 4031426 CGGCCCTAGGCAAGC CGAG GAA CTCG TTTTTCCCCGACGAT RPE_3611 4031468 - 4033432 + | methyl-accepting chemotaxis sensory transducer TERM 3626 4033495 - 4033439 - T 71 -9.7 -3.71848 | gap 3, opp_overlap 4033439 4033458 4033459 GCGGCGTAGGAAGAA GCGAATAGCGAATAG-AAG-TCGAGCGC CGCC GCGC-CGTTCTTACTATTCGCCATTCCC TATTCGCTACTCACC RPE_3612 4034704 - 4033514 - | elongation factor Tu TERM 3627 4035165 - 4035147 - g 76 -14.6 -3.21099 | opp_overlap 4035161 TTTCTCGATGACCAA GCCGATCG TCT CGATCGGC CTGATGCAACTGGTC RPE_3613 4034866 - 4036095 + | beta-lactamase TERM 3628 4036175 - 4036126 - T 87 -18.7 -2.53876 | gap 1 CGCGAGCGCAAGCGA GCGAGCCCGGAATCCATAACCACC GCC GGGAGT-ATGGATTCCGGGCCTGC GCCCCCATCCCGGAA RPE_3614 4036979 - 4036212 - | short-chain dehydrogenase/reductase SDR TERM 3629 4036733 - 4036753 + g 75 -9 -4.15833 | overlap 4036721 TGACGCCAAATTTGG CGTTGGTC TCCTC GACCAGCG TTTTGAGATCGTCCT TERM 3630 4037000 - 4037018 + r 83 -11.6 -4.0162 | GTTCTCCCGTGATGT CCGGCGAC GAA GGCGCCGG TTTGTGGTGTGAAAG RPE_3615 4037788 - 4037036 - | phosphoglycerate mutase TERM 3631 4037209 - 4037252 + g 90 -18.8 -3.21099 | gap 1 CGATGGTGAAGGCGA GGCCTCGCTCCGGCTGGCCGC CGA GCG-CCAGCCCGATCGCGGCC TTGATGGTGCCGCCA TERM 3632 4037402 - 4037421 + g 70 -10.6 -3.53012 | overlap 4037413 CGCGAACCAGTAGCT GCCGACCG CGAT CGGCCGGC TTTCGAAGAACGCCG TERM 3633 4037905 - 4037883 - H 72 -4 -4.56914 | CGACGCAAAGCAAAA CGAATTCCGC ATC ACGGCAATCG CCGCAAGCCAACGTC RPE_3616 4037933 - 4038718 + | short-chain dehydrogenase/reductase SDR TERM 3634 4038969 - 4038990 + T 93 -13.7 -4.18762 | gap 1, opp_overlap 4038957 ACACGCCGTCCCGTT CCCGCGGCGC TTC GCGCC-CGGG TTTTGGCTGAACGTT RPE_3617 4039433 - 4039152 - | hypothetical protein TERM 3635 4039654 - 4039680 + r 74 -4.9 -4.64766 | opp_overlap 4039619, overlap 4039655 4039668 4039675 CCGCAGCTTCGCTGC GCGCGCCCCGG AATGA CCGGTGCGGGG TTTTTCACCTCTCCC RPE_3618 4041082 - 4040021 - | aminoglycoside phosphotransferase RPE_3619 4042482 - 4041247 - | acyl-CoA dehydrogenase domain-containing protein TERM 3636 4042704 - 4042685 - H 70 -10 -3.54129 | TACACGCGTTTGAAA TGCAAGCG GCCT CGCCTGCA TCCGCGGCATGGGTT RPE_3620 4042726 - 4043385 + | TetR family transcriptional regulator TERM 3637 4043384 - 4043363 - f 77 -13.7 -3.2665 | overlap 4043361 4043353 4043365 CGAAAGTCGACAAGA CAGCGGCGC GGCG GCGCCGCTA GACGGTTGCCACCCA TERM 3638 4043382 - 4043365 - f 76 -14.1 -3.19234 | overlap 4043363 4043361 4043353 AAAGTCGACAAGACA GCGGCGC GGCG GCGCCGC TAGACGGTTGCCACC RPE_3621 4043583 - 4044014 + | hypothetical protein RPE_3622 4044204 - 4044749 + | hypothetical protein TERM 3639 4045557 - 4045588 + GT 71 -12.8 -3.04144 | overlap 4045581 GTTCGCCCATGCCGA GCGCGTCGCGCGGC AAGC GCCGCGCGCGGAGC TGTTCGCCGTCGAGG TERM 3640 4045644 - 4045685 + GT 83 -15.8 -3.14564 | gap 1 CCATCTCGACGCAGT TCGGGCGCGGG-TCGGCGA ATTCC TCGCCGCTCCCACGCCCGG TTGCTCGAACGATGC RPE_3624 4046687 - 4045710 - | cysteine synthase A RPE_3623 4044784 - 4045767 + | alpha/beta hydrolase fold TERM 3641 4047305 - 4047286 - g 70 -10 -3.65199 | gap 1, overlap 4047273 AAGCGCCCACCGAAA CGCCGGCCA CGC TGGCCG-CG GACAAGGCCGCGCCG TERM 3642 4047400 - 4047366 - g 79 -7.7 -4.56597 | gap 1, overlap 4047367 GCGCCCGCCGAAAAA CCCGCGGCTG-CGGCT ACCG AGCCGGCTGCCGCCGC TGAACCCACCGCCGC RPE_3625 4047168 - 4047497 + | hypothetical protein RPE_3626 4047802 - 4048263 + | hypothetical protein RPE_3627 4050761 - 4048416 - | PAS/PAC sensor hybrid histidine kinase RPE_3628 4051392 - 4050763 - | CheC, inhibitor of MCP methylation RPE_3629 4051772 - 4051389 - | response regulator receiver protein RPE_3630 4052030 - 4051824 - | hypothetical protein RPE_3631 4054327 - 4052060 - | CheA signal transduction histidine kinases TERM 3643 4052154 - 4052132 - G 89 -9.9 -4.56597 | gap 1, opp_overlap 4052153, overlap 4052134 CGTCGTGCCCAAAAA GC-TGCTCGC CCCG GCGAGCATGC CCTGCAACGGCTTCA RPE_3632 4054716 - 4054324 - | response regulator receiver protein RPE_3633 4055578 - 4054703 - | MCP methyltransferase, CheR-type RPE_3634 4056209 - 4055565 - | HEAT repeat-containing PBS lyase TERM 3644 4056156 - 4056171 + g 70 -11.8 -3.42395 | overlap 4056155 CGTCGTGAGTTCGTC GGCGGC CGGC GCCGCC TGTTTCGATGATGGG RPE_3635 4057302 - 4056196 - | response regulator receiver modulated CheB methylesterase RPE_3636 4058894 - 4057299 - | CheW protein TERM 3645 4058308 - 4058271 - G 71 -9.7 -3.83026 | gap 1, opp_overlap 4058270, overlap 4058272 CGCGCCGAGATCAAA GCTCAGCAGCGCCACCAG CCG CTGG-GGCGCGGCCGCGA GATTGTCCGCCCCCG TERM 3646 4058568 - 4058526 - G 71 -12.7 -3.23216 | gap 1, overlap 4058551 CGGCACCACCAGCAA CCGC-TCGATCCGGTCGACC CAAA AGCCGACCGTATCGCCGCGG TCGATCACGATGACG RPE_3637 4060968 - 4058887 - | methyl-accepting chemotaxis sensory transducer TERM 3647 4059570 - 4059613 + g 74 -7.4 -4.24948 | overlap 4059568 4059552 4059593 GCATGCGGGTGATGC GGTCGAGCGTGTCGGCG-GC TTTGCC GCGCGCCG-CATGCGCGGTC TTTTCGATCTGCTCC TERM 3648 4059653 - 4059680 + g 77 -16.2 -2.66316 | opp_overlap 4059638, overlap 4059651 CTGGCCTGCTGCGTC GCCGCGGCCTGC TGCT GCGCGCCGCGGC TGATCTGATCGACCG TERM 3649 4059827 - 4059839 + g 72 -6.9 -4.1822 | GCTGCGACCGATCCG GTCGC GAC GCGGC TTTCTTCCAGTGCCG TERM 3650 4061694 - 4061720 + G 70 -8.8 -3.95073 | gap 1 AACCTGTTCGCGGAG CAGGATC-GGC CCGAAA GCCTGATCCTG TTTCTGCATATCCGG RPE_3638 4061220 - 4061873 + | CheC, inhibitor of MCP methylation RPE_3639 4063006 - 4061894 - | putative ribonuclease BN RPE_3640 4063319 - 4063056 - | transglycosylase-associated protein RPE_3641 4063539 - 4064615 + | alpha/beta hydrolase fold RPE_3642 4064694 - 4064566 - | hypothetical protein RPE_3643 4065640 - 4064675 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase RPE_3644 4067762 - 4065633 - | 4-alpha-glucanotransferase TERM 3651 4067211 - 4067186 - G 71 -12.5 -3.31461 | overlap 4067187 GATTGACGCCGACAA TGTCGCAGCCG TGGC CGGCCGCGACT TGCGCAAACTGCGCC TERM 3652 4067210 - 4067187 - G 74 -16 -2.58663 | overlap 4067186 ATTGACGCCGACAAT GTCGCAGCCG TGGC CGGCCGCGAC TTGCGCAAACTGCGC RPE_3645 4068070 - 4069347 + | catalase TERM 3653 4069349 - 4069387 + F 100 -25.5 -3.53012 | gap 1, opp_overlap 4069357, overlap 4069383 CAGCCGAGGTTTGAC CCT-AACGAGCCGGCGCG CCCG CGCGCCGGCTCGTTCAGG TTTGGCGGCCAAAGC TERM 3654 4069378 - 4069357 - f 87 -18.7 -2.73364 | opp_overlap 4069349 GTTTGACCCTAACGA GCCGGCGCG CCCG CGCGCCGGC TCGTTCAGGTTTGGC RPE_3646 4069537 - 4070187 + | hypothetical protein RPE_3647 4071066 - 4070296 - | exodeoxyribonuclease III Xth RPE_3648 4071976 - 4071107 - | short-chain dehydrogenase/reductase SDR RPE_3649 4072180 - 4073349 + | alcohol dehydrogenase RPE_3650 4075761 - 4073470 - | oxidoreductase alpha (molybdopterin) subunit TERM 3655 4074090 - 4074074 - G 78 -13.7 -3.53012 | opp_overlap 4074069 4074068 GTCGCCTTGGCCAAA CCGGCGA CGA TCGCCGG CTCGGATTTCAAATG TERM 3656 4074813 - 4074862 + g 73 -4 -4.59773 | gap 1, opp_overlap 4074807, overlap 4074848 CGATGAAATCGGCAT CGAGTACGCGGCGGCCCGAGGCC TTCGC GGCATCGT-CGGCGGCGAACACG TTTTTGCAGATGCCG TERM 3657 4075162 - 4075105 - G 81 -3.5 -5.10461 | gap 4 CTGACCGAAGAAAAA GATC-GCGTCGGCCTTGGCGAGATCGTCG AACA CCACGGTCCCGAC--G-CCGACGCCGATC AGTTTCTTCAAGGCG RPE_3651 4075967 - 4076152 + | hypothetical protein RPE_3652 4084757 - 4076226 - | glycosyltransferase 36 TERM 3658 4077537 - 4077562 + g 71 -9 -3.79021 | gap 1, opp_overlap 4077529 GACAAATTGCCGGGC CGCGGCGCGCA ACAGA TG-GCGTCGCG TTTCGTCGGGTTTTG TERM 3659 4078799 - 4078760 - G 72 -12.9 -3.16191 | gap 2, overlap 4078764 CGAGATGGTCAGCAA TCGATCCGCGACGCGCGGT CAGC ACCACGCG-CGCGG-TCGC CAAAAGCAGGTCCCT TERM 3660 4080853 - 4080842 - G 77 -5.8 -4.62069 | overlap 4080843 TGGCGATGGCAAAAA GGCT CGCG AGCC GGGCCTCCGACGCCA TERM 3661 4083729 - 4083745 + g 74 -7.9 -4.20516 | opp_overlap 4083729 TTCGATCTCGGAACA TGGCGAG CAC CGCGCCA TTTGTTCGATCGCGC TERM 3662 4084187 - 4084209 + g 70 -6.3 -4.18018 | gap 1 CACGGCCGCCGGTGA TCTG-GTCGG CCAA CCGGCGCAGA TTTTCGATCAGAACG TERM 3663 4084880 - 4084910 + r 70 -13.3 -2.84812 | gap 1, opp_overlap 4084871 AGATCAGGGCCATTG CGGCGCGCAGCG AGATGGAC CGC-GCGCGCCG TCTGGTAGTGTCGGT RPE_3653 4085458 - 4085324 - | hypothetical protein TERM 3664 4086344 - 4086378 + r 100 -11.5 -5.13741 | gap 1, opp_overlap 4086310 4086311, overlap 4086345 CCCTTTGGCGGGCGC AGGATCGGGAGAGTGA TCAT TC-CTCTCCCGGTCCC TTTTTCTTCCATTGC TERM 3665 4086345 - 4086377 + r 85 -15 -3.6716 | gap 1, opp_overlap 4086310 4086311, overlap 4086344 CCTTTGGCGGGCGCA GGATCGGGAGAGTGA TCAT TC-CTCTCCCGGTCC CTTTTTCTTCCATTG RPE_3654 4087217 - 4086465 - | signal transduction histidine kinase RPE_3655 4087441 - 4088139 + | Crp/FNR family transcriptional regulator TERM 3666 4088701 - 4088719 + G 83 -9.5 -4.43477 | CCGCCGAATGTCGTT CCTGGCC TGCTT GGCCGGG TTTTACTTGCATCCG RPE_3656 4088676 - 4089071 + | hypothetical protein TERM 3667 4089100 - 4089090 - T 74 -2.4 -4.83615 | GACCGGGCACAAAAA CGGG GTC CCCT GGGCTTGGGGCGGCG RPE_3657 4090173 - 4089127 - | bile acid:sodium symporter TERM 3668 4089342 - 4089307 - G 87 -6.9 -5.0538 | gap 2 CGCCAGCTCAAAAAA GTTGCTGGCGCCGATCA GCGC CGA-CGG-GCCGGCAAC GCAATGCTGCTCGCC RPE_3658 4090606 - 4090181 - | arsenate reductase RPE_3659 4091133 - 4090606 - | protein tyrosine phosphatase RPE_3660 4091482 - 4091126 - | ArsR family transcriptional regulator RPE_3661 4091942 - 4091709 - | thiol-disulfide isomerase and thioredoxins RPE_3662 4093007 - 4091955 - | permease TERM 3669 4092618 - 4092588 - G 81 -5.2 -4.72272 | overlap 4092594 GGCGGCGATCAAAAA CGAGAAGGTGACGC CGA GCGGCACCCCGGCG CTGACAAAGCCGATG TERM 3670 4092612 - 4092594 - G 74 -10.2 -3.77111 | overlap 4092588 GATCAAAAACGAGAA GGTGACGC CGA GCGGCACC CCGGCGCTGACAAAG RPE_3663 4093315 - 4093004 - | ArsR family transcriptional regulator RPE_3664 4094093 - 4094602 + | hypothetical protein TERM 3671 4095175 - 4095122 - g 83 -15.9 -3.58522 | gap 1 AGCATCATCTCGAAA TGGCCGAACAGCTCGACCAGCAGCGC AGC GCGCCGACGGTCG-GCAGCACGACCA AGTAATCGCCCTCGC RPE_3665 4094617 - 4095180 + | hypothetical protein TERM 3672 4095187 - 4095244 + F 81 -11.9 -3.90744 | gap 1, opp_overlap 4095182, overlap 4095203 ACCAAGTAATCGCCC TCGCCCGGGCTCACG-ATGGCGCGGATC AAC GATCCGCGCCATTCATGTGAGAGTGCGA TTGTTTCGGAAAGCA TERM 3673 4095203 - 4095227 + F 95 -20.1 -3.26471 | opp_overlap 4095182, overlap 4095187 CGCCCGGGCTCACGA TGGCGCGGATC AAC GATCCGCGCCA TTCATGTGAGAGTGC TERM 3674 4095386 - 4095374 - f 74 -9.1 -3.91144 | opp_overlap 4095374 4095376 GTCAGATGCCACAAA TGGCG GCA CGCCA CGCGCGACCCGGCTG TERM 3675 4095919 - 4095893 - g 77 -13 -3.53091 | ACTCCGGCTGGGAAA GGGTGCAGGCGA TCG TCGACTACACCC ACAACCAGATCCAAT TERM 3676 4096081 - 4096115 + G 71 -2.8 -4.60889 | gap 2, overlap 4096082 4096083 4096085 ACCGGCTATCTCGGC GACATCGGCGTGCCGG CCGAT CCGG--CGCCGATGGA TTTTTCCGCCTGGTT RPE_3666 4095496 - 4096332 + | transglutaminase domain-containing protein RPE_3667 4096681 - 4096469 - | hypothetical protein RPE_3668 4096804 - 4097220 + | hypothetical protein TERM 3677 4097230 - 4097277 + T 85 -15.1 -3.44622 | gap 3, opp_overlap 4097236 4097239 4097242, overlap 4097242 GGTTGAGCCGGGGTC CCGA--AACGACAATGGCGGAGGG AGG CCCTCCGCCATTG-CGTCACTCGG TTAATTGTCGGGATC TERM 3678 4097269 - 4097236 - T 100 -21.9 -3.53012 | gap 1, opp_overlap 4097230 4097242, overlap 4097239 4097242 GCCGGGGTCCCGAAA CGACAATGGCGGAGGG AGG CCCTCCGCCATTG-CG TCACTCGGTTAATTG TERM 3679 4097267 - 4097239 - T 100 -23.3 -2.90496 | opp_overlap 4097230 4097242, overlap 4097236 4097242 GGGGTCCCGAAACGA CAATGGCGGAGGG AGG CCCTCCGCCATTG CGTCACTCGGTTAAT TERM 3680 4097264 - 4097242 - T 100 -19.2 -3.60151 | opp_overlap 4097230 4097242, overlap 4097239 4097236 GTCCCGAAACGACAA TGGCGGAGGG AGG CCCTCCGCCA TTGCGTCACTCGGTT TERM 3681 4097242 - 4097264 + T 91 -19.2 -3.08312 | opp_overlap 4097242 4097239 4097236, overlap 4097230 GTCCCGAAACGACAA TGGCGGAGGG AGG CCCTCCGCCA TTGCGTCACTCGGTT RPE_3669 4098628 - 4097291 - | carbohydrate-selective porin OprB TERM 3682 4097954 - 4097975 + g 72 -7.2 -4.19704 | opp_overlap 4097956, overlap 4097957 GGGATCGCCGGCGAA CACCGCGC CGAGCA GCGCGATG TTTTCGGTCGGATTG RPE_3670 4100472 - 4099057 - | hypothetical protein RPE_3671 4101308 - 4100469 - | iron permease FTR1 RPE_3672 4101684 - 4101325 - | hypothetical protein TERM 3683 4101472 - 4101492 + g 71 -14.7 -2.61681 | overlap 4101471 TTCCTTGCTTTCGAA CTCGGCCGG CTC CTGGCCGAG ATTGTGCAATTCGAG TERM 3684 4101621 - 4101582 - G 71 -2.7 -4.62336 | gap 2 ACTCGATGCGAAAAA CCGG-TTCGTCG-TCGGCG CGCA CGCCGATCGTCATCGCCGG CAGCAGCGCCAGGGC TERM 3685 4101687 - 4101645 - G 91 -9.2 -4.84359 | gap 2, opp_overlap 4101647 4101648, overlap 4101649 4101651 CCAGGGCCAGAAAAA GCAAT--ACCGGGCGGCGCG TCTCG CGCACCGCCCGGCCCATTTC ATCACTCAAGCTCAT TERM 3686 4101681 - 4101649 - G 91 -16.2 -3.88001 | opp_overlap 4101648 4101647, overlap 4101645 4101651 GGCCAGAAAAAGCAA TACCGGGCGGCGCG TCTCG CGCACCGCCCGGCC CATTTCATCACTCAA TERM 3687 4101679 - 4101651 - G 100 -21 -3.51785 | opp_overlap 4101648 4101647, overlap 4101649 4101645 CCAGAAAAAGCAATA CCGGGCGGCGCG TCTCG CGCACCGCCCGG CCCATTTCATCACTC RPE_3673 4102398 - 4101847 - | membrane antigen TERM 3688 4102155 - 4102165 + g 70 -8.2 -4.01101 | opp_overlap 4102148 CCACCCAATCGCCTT CGGC GTA GCCG TTCTTGTTGCCTTTC RPE_3674 4103528 - 4102677 - | short-chain dehydrogenase/reductase SDR RPE_3675 4104103 - 4103525 - | TetR family transcriptional regulator RPE_3676 4105177 - 4104200 - | alpha/beta hydrolase fold TERM 3689 4104385 - 4104399 + g 74 -5.6 -4.5442 | TGACGCGGGCGGCAT CCTTCG GTG CGATGG TTTTGTCGTTGCCGC TERM 3690 4104652 - 4104617 - G 85 -15.5 -3.64703 | gap 2 GTCGCCCGAGGCAAA GCGCGCGAACAGCCGCG GCAC CGCGGC-GCTCGC-CGC CAGCATGCGCGCGAA TERM 3691 4105831 - 4105789 - R 73 -6.9 -4.3739 | gap 1, overlap 4105790 CAGCTGCTGAGAAAA TCGGCGATCGCGGGGTCG GCGCGCAG CG-CCGCGAGATCGCCGT CGCCGGGCAATTGCG RPE_3677 4106294 - 4105773 - | cupin 2 domain-containing protein RPE_3678 4107387 - 4106281 - | rubisco-like protein Rlp1 RPE_3679 4109297 - 4107417 - | ferrous iron transport protein B RPE_3680 4109597 - 4109310 - | FeoA family protein RPE_3681 4110246 - 4109923 - | hypothetical protein RPE_3682 4110751 - 4111581 + | RNA methyltransferase TERM 3692 4111718 - 4111675 - T 91 -18.2 -3.12749 | gap 1, overlap 4111667 4111677 CTAACAATCTCAAGA GATTCCGGGTTCGGACGCAGC TGC GCTGCGCCCGC-CCCGGAATG ACGTCGCGTAAATGA TERM 3693 4111716 - 4111677 - T 95 -20.8 -3.11727 | gap 1, overlap 4111675 4111667 AACAATCTCAAGAGA TTCCGGGTTCGGACGCAGC TGC GCTGCGCCCGC-CCCGGAA TGACGTCGCGTAAAT RPE_3683 4112739 - 4111753 - | NAD-dependent epimerase/dehydratase TERM 3694 4111819 - 4111839 + g 85 -5.4 -5.0133 | GTCGTCAAAGCTCTG CTCGGC GGTGGTGAA GCCGAG TTTTTTGGCACGCTC TERM 3695 4112764 - 4112813 + r 75 -14.3 -2.79098 | gap 1, overlap 4112761 CCCTATCGGTTGTCA TTCCGGG-ATGATCGTCAGGCGGC GGA GCCGACTGGCGGTGAGGCCCGGAA TCCTTAGTCCCTGCA RPE_3684 4113814 - 4112897 - | binding-protein-dependent transport systems inner membrane component RPE_3685 4114763 - 4113807 - | binding-protein-dependent transport systems inner membrane component TERM 3696 4114660 - 4114644 - G 74 -7.9 -4.27467 | overlap 4114645 GAACAGCAAGAGAAA CGCCGCC GCC GGCAGCA TGAACCAGGCCGCCA TERM 3697 4115735 - 4115781 + r 78 -12.1 -3.78934 | overlap 4115736 AATACATCCAGGTGT TGGCGTCGCCGGAAGCGTGGC CGAGC GCCATGCCACCGGGGGTGCCG TTCTTCTGCAGGCCC TERM 3698 4115736 - 4115780 + r 74 -13.4 -2.87146 | overlap 4115735 ATACATCCAGGTGTT GGCGTCGCCGGAAGCGTGGC CGAGC GCCATGCCACCGGGGGTGCC GTTCTTCTGCAGGCC RPE_3687 4117696 - 4116626 - | ABC transporter related TERM 3699 4117012 - 4116978 - G 77 -10.8 -3.76224 | opp_overlap 4116978 4116977 TGCCCATCGAGGAAA TTCATCGCCGGC GAGCCGATGAA GCCGGCGACGAA CTTGTTGTCGGGACG RPE_3688 4117883 - 4119682 + | dihydroxy-acid dehydratase TERM 3700 4119800 - 4119761 - f 78 -14.2 -3.05647 | gap 1, overlap 4119731 TGTGAAGCACAGAGA TTCCGGGTTCGCCCGCAGC TTC GCGGCGTGCGC-CCCGGAA TGACGAACTTGAAGG TERM 3701 4120305 - 4120272 - g 70 -13.1 -3.05384 | gap 1 CGCCGGCGTATTCAA GGCGGCGCCG-AACCG CTA CGTCTACGGCGCCACC AAGGCCGCGGTGGCG RPE_3689 4119853 - 4120587 + | short-chain dehydrogenase/reductase SDR TERM 3702 4120653 - 4120691 + F 74 -13 -3.28712 | TGTTGCTTCGCAGAG CCGGGGCCGTCGCGAAGG CAG CATCCGTAACGGTCCCGG TTCTGCGAAGCGGCA TERM 3703 4120780 - 4120816 + G 77 -13.6 -3.57462 | gap 1, opp_overlap 4120770 4120768, overlap 4120814 CACCATCGATCTCAC CCACCGCTGCGCCGTCG TCAC CGGCGGCGC-GCAGGGG TTTGGCCGTGCCATC TERM 3704 4121042 - 4121026 - g 81 -15.1 -3.61715 | CATCCTGGTCAACAA CGCCGGC ATC GCCGGCG TCAACAAGACGGTGT RPE_3690 4120760 - 4121506 + | short-chain dehydrogenase/reductase SDR RPE_3691 4122038 - 4121796 - | hypothetical protein TERM 3705 4123702 - 4123718 + G 71 -3 -4.66537 | gap 1 GGCAAGAAGCGCGCG CTGATCG TCAC CGA-CAG TTTTCTGTTCAGCAA TERM 3706 4123852 - 4123836 - g 82 -6.5 -4.78107 | opp_overlap 4123835 CACGATCATCAAAAA GGGCG TCGAGAT CGCCC ATGCCTTCCAGCCCG RPE_3692 4122190 - 4124904 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 3707 4124972 - 4124936 - f 83 -11.6 -4.03888 | gap 1, overlap 4124937 GAGCTAGAAGAACAA GTCGTGAATGGCCGGGA CTCG TCCCGGCCATTGGCG-C TTCAAGGGGACATGG RPE_3693 4125232 - 4125933 + | hypothetical protein TERM 3708 4125984 - 4125960 - T 83 -17.2 -2.64155 | overlap 4125957 4125956 GCTCTCGGAAATGCA GATGCCCGCG ACCAG CGCGGGCATC ACGAACGACAGTTGA RPE_3694 4126428 - 4126090 - | hypothetical protein TERM 3709 4126264 - 4126241 - G 76 -6 -4.56775 | gap 1, overlap 4126242 4126246 AGCCGTTCGGAAAAA TCG-AACGTGG CCG CCACGTTGCGC TCGACATAGCCGTTC TERM 3710 4126555 - 4126587 + r 85 -14.7 -3.56594 | opp_overlap 4126552 4126574 4126575 TGCTATCCAACACGT CCGGCGCGGCTACGT CAA ACGCCACCGCGCCGG TTTCAGGGAATTTGG TERM 3711 4126667 - 4126689 + r 85 -14.8 -3.61398 | GCGAGCCCCGTTTGC GGGCGACCGC GCC GCGGTCACCC TTGTTGCAGAGCGGC RPE_3695 4128588 - 4126747 - | diguanylate cyclase/phosphodiesterase RPE_3696 4129456 - 4128944 - | putative insertion sequence transposase protein RPE_3697 4129892 - 4129533 - | putative insertion sequence transposase protein RPE_3698 4129973 - 4130440 + | hypothetical protein RPE_3699 4130816 - 4130547 - | hypothetical protein RPE_3700 4131270 - 4130899 - | hypothetical protein RPE_3701 4131378 - 4131686 + | excinuclease ABC subunit C TERM 3712 4132466 - 4132446 - T 100 -14 -4.83169 | ATCGGCGCACAAAAA TGCCCGCG ACCAG CGCGGGCA TTGACCAGTTTCGAT RPE_3702 4132746 - 4132495 - | hypothetical protein RPE_3703 4133219 - 4132743 - | glutathione peroxidase RPE_3704 4134647 - 4133247 - | amidase TERM 3713 4133548 - 4133584 + g 76 -6.6 -4.56597 | gap 2, opp_overlap 4133546 4133544, overlap 4133553 CGCGCAAAGAACAGC TGC-CACTC-CCGCGTCA GCG TGGCGCGACGGGTGAGCA TTTTTGAGAACGCCG RPE_3705 4134974 - 4134717 - | hypothetical protein RPE_3706 4135095 - 4136060 + | proline iminopeptidase RPE_3707 4136189 - 4136641 + | hypothetical protein TERM 3714 4138649 - 4138695 + G 74 -10.1 -3.794 | overlap 4138650 4138666 TATTCGGTACTGTCG CCGTTCGGCCT-GGTGCCGGCGG CCG CCGCCGGCATCGACGTCGG-CGC TTTCCTGGATTCAGC TERM 3715 4139232 - 4139213 - g 81 -7.8 -4.58283 | overlap 4139215 GAAGCGTTCGAAAAA TCCGGCAA GCTG CCGCCGGA AACCGCCGCGGCTTC TERM 3716 4139305 - 4139284 - g 74 -10.1 -3.8512 | gap 1, overlap 4139285 CACCGACGACAAGAA CGCAGCCGCG CTA CGCAGC-GCG GGCGCCGATGGCGAC RPE_3708 4136897 - 4139752 + | bifunctional transaldolase/phosoglucose isomerase TERM 3717 4139874 - 4139914 + G 83 -9.6 -4.37092 | opp_overlap 4139855 4139853 4139874, overlap 4139876 CACGCGGTCGCAACA TTGGCCAGCGAGGGCGCG CAAGC CGCCTCCTCGCTGGAAGA TTTTGTCAGCAAGCT TERM 3718 4140072 - 4140098 + G 76 -6.5 -4.53303 | gap 1, overlap 4140074 GACGACATCCGCCGC GCCGCCGC-CTT GAAA GAGCGCGGCGTC TTTTATGTCGACGTC RPE_3709 4139760 - 4140797 + | 6-phosphogluconate dehydrogenase-like protein TERM 3719 4141149 - 4141165 + G 70 -3.5 -4.52589 | overlap 4141149 4141151 4141154 AAGCCGCGCGCCACA CCGGCGG CAA CCGGCTG TTTTATCTCGCAACC TERM 3720 4141261 - 4141245 - g 75 -9.3 -4.1552 | overlap 4141246 TATTGCGCGAAGAAA GCGGCGC CTG GCGCCGG CTGATCATCGAAAAG RPE_3710 4140794 - 4142314 + | glucose-6-phosphate 1-dehydrogenase RPE_3711 4142311 - 4143048 + | 6-phosphogluconolactonase TERM 3721 4143111 - 4143135 + G 72 -11.4 -3.53012 | opp_overlap 4143096 4143099 4143124 4143125, overlap 4143134 GCACGATCGCCAGCG CGCTGGCCGA CAAGC TCGGCTGGCG TTTCGCCGACGGCGA RPE_3712 4143041 - 4143571 + | carbohydrate kinase RPE_3713 4143568 - 4144377 + | Cof-like hydrolase RPE_3714 4146465 - 4144669 - | glycoside hydrolase 15-related protein TERM 3722 4145076 - 4145090 + g 73 -4.2 -4.58395 | opp_overlap 4145076 AGGGCAGCAGCAGAA TGCTGG CGT CGAGCA TTTTTGAGCCGTACG RPE_3715 4148422 - 4146470 - | 4-alpha-glucanotransferase TERM 3723 4147610 - 4147589 - G 74 -10.1 -3.81137 | gap 1, opp_overlap 4147600 TTCGAAACAGGCAAA GCGCGACAGC AGC GC-GCCGCGC TCCTTGCGAAACGAT TERM 3724 4150135 - 4150108 - g 70 -12 -3.36327 | gap 1 CTACGGCATCTACAA CGGCTTCGAGCTC TTG GAGCACG-AGCCG ATCCCCGGCAAGGAG TERM 3725 4150241 - 4150262 + G 72 -14.4 -3.01712 | opp_overlap 4150238 4150237 CGCGACATCAACCGG GCGCGGCG CGCCAA CGCCGCGC TGTTGCAGACGGCCA RPE_3716 4148609 - 4150561 + | alpha amylase, catalytic region TERM 3726 4152620 - 4152582 - g 86 -17.5 -3.31144 | TCGCGAGCGCTACAA TC-CGCGCGCCTTCGCCGC GGT GCGGC-AGGGCGCGCGCGA AGGCACCCTGCTCGA TERM 3727 4153407 - 4153421 + G 72 -5.6 -4.34402 | overlap 4153408 CGCCGGCATGAGCAT CCGCCA TCA TGGCGA TTTTCATCTCGGCCA RPE_3717 4150573 - 4153875 + | trehalose synthase RPE_3718 4153872 - 4156019 + | glycogen branching enzyme RPE_3719 4156022 - 4158100 + | glycogen debranching enzyme GlgX TERM 3728 4159354 - 4159304 - g 77 -15.3 -3.06915 | gap 1, opp_overlap 4159336, overlap 4159306 ATCGACGGCACGGAA GACGC-CGCCGGCGCCATCGTGAC GCCG GACACGTTGGCGCGGGCTCGCGCC GCCGGGCTCGACCCG TERM 3729 4159352 - 4159306 - g 73 -14.3 -3.09327 | gap 1, opp_overlap 4159336, overlap 4159304 CGACGGCACGGAAGA CGC-CGCCGGCGCCATCGTGAC GCCG GACACGTTGGCGCGGGCTCGCG CCGCCGGGCTCGACC RPE_3720 4158185 - 4159507 + | hydroxypyruvate reductase TERM 3730 4160086 - 4160102 + G 81 -12.3 -3.85698 | CGCGGCGGCGTGCTG CTGCCGA TCA TCGGCAG TTTCTACGGCCAGGC TERM 3731 4161512 - 4161490 - g 71 -9.1 -3.8647 | gap 1, opp_overlap 4161490 4161491, overlap 4161491 ACCCACGACACCAAA CGCG-GCGAG GATG CCCGCGCGCG CATTCTCGCGCTGGC TERM 3732 4162120 - 4162138 + G 82 -17.4 -3.01712 | GAGCTGCTATCGCTA CGCGCGGC GCT GCCGCGCG TCTTCGCCGAAGGCA RPE_3721 4159675 - 4162467 + | malto-oligosyltrehalose synthase TERM 3733 4162625 - 4162593 - T 95 -10.6 -4.41895 | AAGCCGGAATCAAAA GGCCGTCCGG GATCACGCGAGGG CCGGACGGCC TTGGCGGCGTCGTGC RPE_3722 4163072 - 4162761 - | hypothetical protein RPE_3723 4163237 - 4163401 + | hypothetical protein TERM 3734 4163417 - 4163429 + T 71 -9.1 -3.71848 | TCGCTACCCGGCCCC GCTCG CCG CGAGC TTCTTGATCGCGGCC ligD 4166128 - 4163405 - | ATP-dependent DNA ligase TERM 3735 4163718 - 4163749 + g 72 -7.2 -4.23892 | gap 1 TCCGGGCTGTCCTCG GCCATCCGCGCGCAC ACG GTTTGCGCGAA-GGC TTTTGCCTCCTTCCA TERM 3736 4163958 - 4163940 - G 81 -11.6 -3.94184 | opp_overlap 4163939 4163938 AGATCGAACACCAAA CGCCCGGG CTG CTCGGGCG CGTTCTCGGCGCAAT TERM 3737 4166047 - 4166027 - G 81 -16.1 -3.21099 | opp_overlap 4166038 TTTCTGGATCACGAA GCGCCGCCG CTT CGACGGCGC CACCGGCGCCTCGCC TERM 3738 4166979 - 4166958 - g 72 -11.5 -3.53343 | AAGGCCGCCGGCAAA CCGCTGCCG AAGC CGGCAGCCG AGGAAAAGCCCGACA TERM 3739 4167136 - 4167103 - g 75 -15.9 -2.73875 | overlap 4167082 4167085 4167100 4167105 CCGCGCGCAAGACGA CACGCGGCCCGGCGC GGCG GCGCAAGGCCGGGTG AGCGGCGGCCGACAA RPE_3725 4166262 - 4167137 + | Ku domain-containing protein RPE_3726 4168101 - 4167748 - | hypothetical protein RPE_3727 4168415 - 4168176 - | SirA-like TERM 3740 4168322 - 4168338 + g 75 -4.4 -4.58283 | gap 1 AATGCACCTCCAGCC GCTC-GC CGGC GCTGAGC TTTTTCAGCGCCTTG mobA 4168518 - 4169153 + | molybdopterin-guanine dinucleotide biosynthesis protein A RPE_3729 4170191 - 4169475 - | urease accessory protein UreF TERM 3741 4170196 - 4170140 - G 70 -12.9 -2.95884 | opp_overlap 4170157 TCATCAATCGATACA GCGCCGCGGCCAACGCGGCCGAC AAGGCGCCGGG GTCAGTCGCGTCGGTCACGCCGC GCCGTCATGTCGGCT RPE_3730 4170950 - 4170201 - | UreE urease accessory domain-containing protein TERM 3742 4170985 - 4171001 + r 73 -10.9 -3.61371 | opp_overlap 4170987 GATTTGATGCCATCA TAGCGCA GCC TGCGCTA TTTCAGGTCGACTTT RPE_3731 4171298 - 4170999 - | antibiotic biosynthesis monooxygenase TERM 3743 4172430 - 4172409 - R 83 -9.4 -4.2679 | gap 1 GAACGTTCAGCAAAA CCCG-GGCG AAACG CGCCGCGGG AAGGCGAAGGCATGT ureC 4174488 - 4172776 - | urease subunit alpha TERM 3744 4173049 - 4173013 - G 93 -10 -4.63218 | GGCCTGCGAACAAAA CACCACCGACGACGCG GTGAG CGCACCGCCGAAGGCG CCGAACATCGGCTGG TERM 3745 4173535 - 4173562 + g 75 -3.4 -4.72272 | gap 1, overlap 4173538 ATGGTGGCACACCAT CAGCAT-GTCGAG ATG CTCGTCGATGGTG TTTTTGGTGAACGGC RPE_3733 4175021 - 4174485 - | metal dependent phosphohydrolase TERM 3746 4174548 - 4174568 + g 84 -9.6 -4.57073 | overlap 4174550 CAGATGTTCGTTGAC GCCGCGGC AGCCC GCCGCGAC TTTTTCGGCCCAGTC ureB 4175354 - 4175049 - | urease subunit beta TERM 3747 4175375 - 4175410 + r 70 -11.9 -3.14132 | gap 1, opp_overlap 4175372 4175375 CCTCACACCTAACCA GGCGT-CATGGCCGGG CTTGA CCCGGCCATCCACGTC TTCGTCGCGCAGCAA TERM 3748 4175428 - 4175461 + r 76 -11 -3.77846 | gap 1, opp_overlap 4175426 4175428 4175447, overlap 4175420 CGTCGCGCAGCAAGA CGTG-GATGCCCGCG ACAAG CGCGGGCATGACGCG TTTGAGTCTGTTGTC ureA 4175783 - 4175481 - | urease subunit gamma RPE_3736 4176671 - 4175811 - | urease accessory protein UreD TERM 3749 4176145 - 4176102 - G 72 -11.6 -3.53224 | gap 1, overlap 4176104 4176105 4176107 4176144 CACGGTCTCGGCAAA CATCAGCCGGCCGCC-GCGGC GCA GCCGCCAGCGGTCGACGAACG AGCCGGACAGCATCC TERM 3750 4176140 - 4176107 - G 73 -14.5 -2.84325 | gap 1, overlap 4176105 4176104 4176102 TCTCGGCAAACATCA GCCGGCCGCC-GCGGC GCA GCCGCCAGCGGTCGAC GAACGAGCCGGACAG TERM 3751 4176436 - 4176457 + g 70 -12.9 -3.02144 | opp_overlap 4176433 4176429 ACGGCAAAGCGATCG CCGCCGGCG ATGC CGCCCGCGG TGTTGACGAACATCG RPE_3737 4177570 - 4176875 - | ABC transporter related RPE_3738 4178451 - 4177690 - | ABC transporter related RPE_3739 4179628 - 4178456 - | inner-membrane translocator TERM 3752 4178490 - 4178508 + g 71 -12.4 -3.28447 | overlap 4178475 GCGATCACGCCGTCT TCGCGGGC GGC GCTCGCGA TATTGTCGTCGGTCG RPE_3740 4181319 - 4179625 - | inner-membrane translocator TERM 3753 4180922 - 4180968 + g 72 -12 -3.60296 | overlap 4180923 4180955 CGAACGGCGGCCGCG CTCGCCGGCGCGGCGGCCACCG GGG CGCCGGTCGCGGCGTCGACGAA TTTGCCGTCGGGCTG TERM 3754 4180923 - 4180967 + g 75 -15.5 -2.75963 | overlap 4180922 4180955 GAACGGCGGCCGCGC TCGCCGGCGCGGCGGCCACCG GGG CGCCGGTCGCGGCGTCGACGA ATTTGCCGTCGGGCT TERM 3755 4181402 - 4181457 + r 83 -16.9 -2.52464 | gap 3 ACAAGCGTAGCTTGT CG-CGG-CGGGTGAGGGGGCG-CCGCGT GAT GCCCAGACGCCCCCTCACCCGACTGCCG TCGCTTCGCGCCGGC RPE_3741 4182843 - 4181524 - | branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor TERM 3756 4184602 - 4184579 - g 70 -10.9 -3.5774 | overlap 4184570 ATCGAAGGCGGCAAA CCGCCGTCG CCGGCC CGCCGGCGG CTCCGTGGCGGTGCC RPE_3742 4183302 - 4184774 + | DEAD/DEAH box helicase domain-containing protein RPE_3743 4184797 - 4185081 + | translation initiation factor IF-1 TERM 3757 4185127 - 4185086 - f 93 -7.9 -5.08824 | overlap 4185087 4185088 GCCGCAGGTAAAAAA CGGGCGGGGCGACGG GTCCCAATTCCG CCGTCTCCCCGCCAA AATTCGTCACCCTCT RPE_3744 4185357 - 4185569 + | cold-shock DNA-binding domain-containing protein TERM 3758 4185619 - 4185639 + T 100 -6.7 -5.4833 | opp_overlap 4185614 4185612 4185619, overlap 4185612 CCGAAAATCAGAAAA GGCCGCGCG GAT TGCATGGCC TTTTTTGTTGCGTGG TERM 3759 4185639 - 4185619 - T 80 -6 -4.67635 | opp_overlap 4185619 4185612, overlap 4185614 4185612 CCGAAAATCAGAAAA GGCCGCGC GGATT GCATGGCC TTTTTTGTTGCGTGG RPE_3745 4186338 - 4185697 - | TadE-like protein RPE_3746 4186861 - 4186349 - | TadE family protein RPE_3747 4187252 - 4186923 - | hypothetical protein RPE_3748 4187573 - 4187818 + | Flp/Fap pilin component TERM 3760 4187837 - 4187870 + F 100 -19.7 -4.08692 | opp_overlap 4187840 4187844, overlap 4187840 GCTCAGCCTTCCGAC TAACGAAGGCCTCGG ACCT CCGGGGCCTTCGTTG TTTTCGCACCCGTTC TERM 3761 4187867 - 4187840 - f 89 -17 -3.14344 | opp_overlap 4187837 4187840, overlap 4187844 CAGCCTTCCGACTAA CGAAGGCCTCGG ACCT CCGGGGCCTTCG TTGTTTTCGCACCCG TERM 3762 4187840 - 4187867 + F 100 -19.2 -4.17048 | opp_overlap 4187840 4187844, overlap 4187837 CAGCCTTCCGACTAA CGAAGGCCTCGG ACCT CCGGGGCCTTCG TTGTTTTCGCACCCG TERM 3763 4188005 - 4188058 + F 74 -9.6 -3.9281 | gap 3 TGCGGCGGCCTAGTC GTGGCGCTGATCGCGCTTGCCG-GGCG GAT CGTCTCGGC-GCTGTGATC-GCGCCGC TTGTTTCCCGATCGT RPE_3749 4188139 - 4188663 + | peptidase A24A, prepilin type IV RPE_3750 4188785 - 4189069 + | hypothetical protein TERM 3764 4190428 - 4190382 - g 71 -13.9 -2.88822 | gap 3, overlap 4190379 CGTCGCACAGAAGGA CCTGTCGCGGCCCGACGACGGC TTCGCC GCCGTC-TCGGACC-CG-CAGG GCGACCTGCTCGGCA RPE_3751 4189066 - 4190526 + | type II and III secretion system protein RPE_3752 4190544 - 4191293 + | pilus biogenesis lipoprotein CpaD TERM 3765 4191366 - 4191394 + G 75 -13.7 -3.31461 | opp_overlap 4191363 CGGACGAGCACATCG CGCCCGCGCCGCG GGT CTCGGTGCAGGCG TTCTGCGAGTCGGTC RPE_3753 4191290 - 4192561 + | putative pilus assembly protein CpaE TERM 3766 4192849 - 4192814 - g 72 -14.1 -3.05384 | gap 1, overlap 4192774 GGCGCGCTGATCGAA GCCATCGA-CCTGGCG CAACT CGCCAAGCTCGACGGC GAATCCGCGCGCGAG TERM 3767 4194012 - 4194001 - g 77 -3.6 -4.81852 | CTACAACGAAGAAAA GCGA TTGG CCGC AGCGCTCGATGCCGC RPE_3754 4192580 - 4194049 + | type II secretion system protein E TERM 3768 4194501 - 4194489 - g 77 -6.9 -4.57073 | opp_overlap 4194488 CAGCTTTCTGAAAAA GCGCC GCG AGCGC AATTTCTTGAAGGCC RPE_3755 4194061 - 4195035 + | type II secretion system protein TERM 3769 4195890 - 4195878 - g 70 -6.2 -4.2558 | GATGGCCCAGGAAAA CCGC GACAT GCGG ATGAACGAGGCCGAG TERM 3770 4195927 - 4195912 - g 77 -7.5 -4.31433 | overlap 4195896 4195908 4195913 GAGGCCGAGAAGAAA GCGGC CGCGCT GCCGC CGAAACTCACCGTTC TERM 3771 4195934 - 4195948 + G 79 -4.2 -4.92757 | opp_overlap 4195933 4195934, overlap 4195928 CGCTGCCGCCGAAAC TCACCG TTC CGATGA TTTTGTTCTTCCTGC RPE_3756 4195048 - 4196022 + | type II secretion system protein RPE_3757 4197014 - 4196217 - | TPR repeat-containing protein TERM 3772 4197998 - 4198034 + G 77 -10.2 -3.90112 | opp_overlap 4197998 CCCGGCGGTGGAGAA CGCGATCG-GCGGCCG AGCGATG CGGCCGCTCGA-CGTG TTTCCTTCGCGCAAA TERM 3773 4198154 - 4198205 + G 75 -14.2 -3.29511 | gap 1 GCTGTTGATCGACCT CGGCACGCTGACCGGCGCCGCGCGC GTG GCGCTCGGTCCCGATCTGCC-GCCG TTCTACACCCATGAC RPE_3758 4197150 - 4198532 + | leucyl aminopeptidase TERM 3774 4198682 - 4198640 - g 72 -14.1 -3.05935 | gap 1 AGATCGTCGACGCAA TCGCGCCGTTGCGCCAGGCG CCCT CGCCCGACGCACCG-CTCGA AACCGAGGCGCTGCG RPE_3759 4198525 - 4199364 + | NLP/P60 family lipoprotein RPE_3760 4199986 - 4199345 - | nucleoside diphosphate pyrophosphatase TERM 3775 4200006 - 4200023 + r 76 -10.5 -3.90112 | TGCCCTATAGCGCCG CCGCGTC GTCC GGCGCGG TTTCGTTGCGGAACG RPE_3761 4201632 - 4199995 - | ABC transporter related RPE_3762 4202087 - 4201632 - | PilT protein-like protein RPE_3763 4202323 - 4202078 - | hypothetical protein RPE_3764 4203514 - 4202336 - | binding-protein-dependent transport systems inner membrane component RPE_3765 4204623 - 4203514 - | binding-protein-dependent transport systems inner membrane component RPE_3766 4206516 - 4204627 - | extracellular solute-binding protein RPE_3767 4208411 - 4206513 - | extracellular solute-binding protein TERM 3776 4208690 - 4208670 - R 100 -19.7 -3.60151 | opp_overlap 4208682, overlap 4208645 CTCGCCAAACGACAA CGGCCGGGC ATT GCCCGGCCG CAATCGGAAACACAA RPE_3768 4209272 - 4208718 - | cytochrome c, class I RPE_3769 4209510 - 4210253 + | 3-deoxy-manno-octulosonate cytidylyltransferase RPE_3770 4210298 - 4211158 + | prephenate dehydratase RPE_3771 4212180 - 4211161 - | luciferase-like RPE_3772 4212603 - 4213499 + | 5,10-methylenetetrahydrofolate reductase metH 4213503 - 4217384 + | B12-dependent methionine synthase TERM 3777 4217710 - 4217731 + T 83 -9.4 -4.2679 | gap 1, opp_overlap 4217701, overlap 4217701 ACATGACGTCCCGTT CCCGCGGCG CGTTT CGCC-CGGG TTTTGCTGAACGTTC RPE_3774 4220221 - 4218719 - | glycerol kinase TERM 3778 4218884 - 4218865 - G 76 -6.3 -4.56597 | opp_overlap 4218879, overlap 4218866 4218878 GCGGCTCCGGAAAAA TGCCGGC GGAAAG GCCGGCG AGATAGGCGGCGCCG TERM 3779 4219081 - 4219068 - G 72 -6.7 -4.16943 | GCCCACAGGTCAAAA GTCTG GTAG CAGAC GCTCTCAAGCGCGGC RPE_3775 4221716 - 4220574 - | acyl-CoA dehydrogenase domain-containing protein TERM 3780 4221811 - 4221858 + r 93 -19.2 -3.19192 | overlap 4221814 GAGCCGGCTGGGGCG CAGGCCCGGAATCCATATCCCC TGTC GTGGTTATGGATTCCGGGCTCG TTCGCTTCGCTCGCG TERM 3781 4221814 - 4221855 + r 100 -21.7 -2.79188 | overlap 4221811 CCGGCTGGGGCGCAG GCCCGGAATCCATATCCCC TGTC GTGGTTATGGATTCCGGGC TCGTTCGCTTCGCTC RPE_3776 4223151 - 4221913 - | acyl-CoA dehydrogenase domain-containing protein RPE_3777 4223225 - 4224343 + | transposase IS116/IS110/IS902 family protein TERM 3782 4224380 - 4224348 - T 91 -19.1 -2.87211 | overlap 4224326 4224366 4224367 ACGCCGCCTGAGAGA TCGGCCGGCAGGCGA CAA TCGCCTGGCGGCCGG GCCGGAGCTGCAAGA RPE_3778 4225855 - 4224668 - | acetyl-CoA acetyltransferases RPE_3779 4227528 - 4225852 - | AMP-dependent synthetase and ligase TERM 3783 4227286 - 4227266 - G 88 -7.5 -5.00884 | opp_overlap 4227268, overlap 4227268 4227270 AGCGCGCCGAAAAAA TTCACCGGA TGA TCCGGCGTA TTGCCGAGATACAGC TERM 3784 4227748 - 4227768 + r 95 -12.6 -4.27316 | TGCGCCATCACCCGG CCTTCGCC AGCGA GGCGAAGG TTTTGCCTTCGGCGG RPE_3780 4229824 - 4227740 - | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein TERM 3785 4227957 - 4227971 + g 71 -3.4 -4.63932 | ACGTCGATGTCGGAG GGCCGC GCC GCGATC TTTTCTTCCAGGATA TERM 3786 4229269 - 4229307 + g 71 -9.5 -3.76224 | gap 1, opp_overlap 4229276, overlap 4229270 CGGCCAGCACTTTGC GCG-CAAAGGCTTCGCCG CCCG CGGCGGGGCCTTCGACGA TTTCCTCGATCAGGC TERM 3787 4229409 - 4229443 + g 72 -5.4 -4.4078 | overlap 4229385 4229411 ACCGCGCGCGGCAGG CGCTGCGTGCCGCCGG CGC CGGGCAGCAGGCCGAG TTTTACTTCCGGCAA TERM 3788 4229982 - 4229965 - g 75 -9.1 -4.15044 | opp_overlap 4229965 CGTCCGCCCAAGAAA GCCGCGA CCGA TCGCAGC TTCGTCGTCGCATTG TERM 3789 4230518 - 4230538 + G 76 -15.5 -2.87211 | opp_overlap 4230518 GCGCCGGCGAGATGA TCGCGAAGC GCG GCTTCGCGA TCTCTGCCGGCGAAT TERM 3790 4230538 - 4230518 - g 74 -15.5 -2.62184 | opp_overlap 4230518 GCGCCGGCGAGATGA TCGCGAAGC GCG GCTTCGCGA TCTCTGCCGGCGAAT RPE_3781 4229944 - 4230804 + | IclR family transcriptional regulator RPE_3782 4230868 - 4231665 + | ABC transporter related RPE_3783 4231662 - 4232372 + | ABC transporter related TERM 3791 4232967 - 4233009 + G 84 -9 -4.56597 | CTGGGGCATGGCGAG CGCGATCGGCGCCATCGCCG GCA TGCTGATCGCGCCGGTGGTG TTTTTGGAGCCGAAC RPE_3784 4232383 - 4233261 + | inner-membrane translocator TERM 3792 4233422 - 4233398 - g 100 -11.5 -4.56597 | overlap 4233400 GCTGTTTGCCAAAAA CTTCGTCATCT TCC AGATGACGATG TGGCTGATCTACGCC TERM 3793 4233513 - 4233499 - g 72 -11.4 -3.53012 | TCTCGCTCGGCCAAA GCGCGT TCT ACGCGC TCGGCGCCTACACCT RPE_3785 4233264 - 4234277 + | inner-membrane translocator TERM 3794 4234303 - 4234329 + F 100 -15.9 -5.45652 | CTCGCGAGCCAGCAG GCCCCTTGCGA CATGT TCGCGAGGGGC TTTTTTCTTCGCCCT RPE_3786 4234434 - 4235687 + | extracellular ligand-binding receptor TERM 3795 4235752 - 4235727 - f 83 -15.5 -3.16191 | gap 1, opp_overlap 4235727 GGATATTCGTAGCAA GCCTCCGGCGAC ATT GTCGC-GGAGGC TTTTTGTTTGCTGCA TERM 3796 4235727 - 4235752 + F 100 -15.5 -5.33405 | gap 1, opp_overlap 4235727 GGATATTCGTAGCAA GCCTCCGGCGAC ATT GTCGC-GGAGGC TTTTTGTTTGCTGCA RPE_3787 4235852 - 4237087 + | extracellular ligand-binding receptor TERM 3797 4237129 - 4237154 + F 100 -21.9 -4.64861 | GCCGTCTCGACCATC GCCCCCGCCGA TCCA TCGGCGGGGGC TTTGTTTTGCCGACG RPE_3788 4237412 - 4238641 + | extracellular ligand-binding receptor TERM 3798 4238646 - 4238660 + F 78 -10 -4.0896 | TCGGCGGCTGACGGC TTCCGC TAA GCGGAA TTTTCGCGACCATTT TERM 3799 4238678 - 4238702 + F 100 -17.2 -4.05446 | TTCGCGACCATTTGC CCCTCCGCAG CGCAC CTGCGGAGGG TTTGTCGTTGAGCGA RPE_3789 4238803 - 4240035 + | extracellular ligand-binding receptor TERM 3800 4240092 - 4240057 - T 79 -16.2 -2.53263 | gap 1 CTGATGCGCAATGCA GGGATCGTCCGGCTCAG ACC CAGAGCCAG-CGATCCC AACCTATCCCCACGT TERM 3801 4240105 - 4240136 + T 71 -10.9 -3.44848 | gap 1, overlap 4240103 CCCAACCTATCCCCA CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGATCGGGCAC RPE_3790 4240761 - 4240219 - | hypothetical protein RPE_3791 4240813 - 4242537 + | sodium/hydrogen exchanger TERM 3802 4242664 - 4242642 - f 72 -13.4 -2.78018 | overlap 4242639 ATTGCCTACTAATTA GGCCGCCTCC CGC GAAGGCAGCC GCAAGCTGCATCGGC RPE_3792 4243137 - 4244825 + | methyl-accepting chemotaxis sensory transducer RPE_3793 4245685 - 4244942 - | ParA family partition protein RPE_3794 4246400 - 4245885 - | MarR family transcriptional regulator TERM 3803 4246763 - 4246802 + G 100 -13.4 -4.41494 | CGCGGGCAACGTCCC CGGCACCGCGCAATTGGC GCTG GCCATGGGCGCGGTGGCG TTTTGCTTCGACATG RPE_3795 4246581 - 4247621 + | inner-membrane translocator TERM 3804 4248644 - 4248599 - g 100 -17.6 -3.87815 | gap 2, opp_overlap 4248599, overlap 4248576 GGCCACGGCGAGAAA GC-CGCTG-CGCTGCCGCCGCG TCCG CGCGCCGCCAGCGGCAGCGCGC CGCTGCTCTCGATCG TERM 3805 4248599 - 4248647 + G 71 -14.5 -2.64616 | opp_overlap 4248576 4248599 GGCCACGGCGAGAAA GCCGCTGCGCTGCCGC-CGCGTC CGCGC GCCGCCAGCGGCAGCGC-GCCGC TGCTCTCGATCGACA RPE_3796 4247627 - 4249396 + | ABC transporter related RPE_3797 4249393 - 4250136 + | ABC transporter related TERM 3806 4250287 - 4250256 - f 70 -10 -3.55071 | overlap 4250259 CGACATCCTCGGAAA CTACGCAGGGCGCG CCGG CGCGTCCCGCATCG TCAGGCGATCATGAC TERM 3807 4250474 - 4250504 + G 77 -4 -4.79223 | gap 2, opp_overlap 4250474 4250473 4250476, overlap 4250477 CAAGCCGCACAAGAT CATCCGCCATCCGG ACATG CCGAA-GGCGG-TG TTTTTCCTGCTCTGG RPE_3798 4250298 - 4251524 + | putative PAS/PAC sensor protein RPE_3799 4252324 - 4251542 - | diguanylate cyclase TERM 3808 4252120 - 4252099 - G 91 -11.5 -4.25283 | ATTGCTGCAGCAAAA GCGCGGAGC GATA GCTCAGCGC CCCGGACAGCAGGGT TERM 3809 4252477 - 4252455 - R 79 -14.1 -3.53224 | opp_overlap 4252475, overlap 4252456 4252471 GACGCGGCGCCCAAA GGCCGGCCC GCAAG GAGCCGGCC GGCGCGATGACGGCG TERM 3810 4252480 - 4252456 - R 75 -14.2 -2.71791 | opp_overlap 4252475, overlap 4252455 4252471 ACGCGGCGCCCAAAG GCCGGCCCGC AAGGA GCCGGCCGGC GCGATGACGGCGCGC RPE_3800 4253646 - 4252498 - | extracellular ligand-binding receptor TERM 3811 4253510 - 4253492 - G 70 -10.2 -3.72576 | overlap 4253493 4253496 TCCTTCGGCACGAAA TCGAGCGC GTT GCGCTCGG GAATGCCGAGCGCGG TERM 3812 4253509 - 4253493 - G 71 -13.7 -2.83403 | overlap 4253492 4253496 CCTTCGGCACGAAAT CGAGCGC GTT GCGCTCG GGAATGCCGAGCGCG RPE_3801 4254174 - 4253728 - | thioesterase superfamily protein RPE_3802 4256308 - 4254407 - | feruloyl-CoA synthase TERM 3813 4254492 - 4254465 - G 72 -14.8 -2.78935 | opp_overlap 4254466, overlap 4254453 AGATCCTCGATCAGA TGCGCGCGATGC TCCA GCACCGCGCGCT GGTTGACCGAGCCCT TERM 3814 4254466 - 4254491 + g 77 -16.1 -2.70932 | opp_overlap 4254465 4254453 GATCCTCGATCAGAT GCGCGCGATGC TCCA GCACCGCGCGC TGGTTGACCGAGCCC RPE_3803 4257114 - 4256308 - | enoyl-CoA hydratase RPE_3804 4257843 - 4257379 - | hypothetical protein RPE_3805 4259144 - 4257840 - | TRAP dicarboxylate transporter, DctM subunit TERM 3815 4258831 - 4258819 - G 78 -10.5 -4.10453 | overlap 4258809 4258808 4258820 GAAATGGCGGCAAAA CCGCC GCA GGCGG CGATGGTGGCGATGC RPE_3806 4259720 - 4259151 - | TRAP dicarboxylate family transporter DctQ subunit TERM 3816 4259830 - 4259792 - R 100 -21.9 -3.05384 | opp_overlap 4259803 GCTCTTGCGAGCGAA CCCGGAATCCATAACCC TGCTG GGGATATGGATTCCGGG CCTGCGCCGCAGCCG RPE_3807 4260909 - 4259884 - | TRAP dicarboxylate transporter- DctP subunit TERM 3817 4259922 - 4259955 + g 77 -10.9 -3.85817 | gap 1, overlap 4259924 TCAGCGCGGCTTTCA GCTCGGCGTCGATGGC GGT GGCGTCGCCGCCG-GC TTTCTGCACCGCGCT TERM 3818 4261891 - 4261921 + G 70 -8.3 -3.91897 | gap 2, overlap 4261892 GCCGTTGCGCTCCTT C-GTC-GCCGAGCCG ATG CGGTTCGGCCGGCTG TTTCTGGCTGGCGAC TERM 3819 4261892 - 4261919 + G 72 -12 -3.5511 | gap 1, overlap 4261891 CCGTTGCGCTCCTTC GTC-GCCGAGCCG ATG CGGTTCGGCCGGC TGTTTCTGGCTGGCG RPE_3808 4261082 - 4262251 + | 4-hydroxybenzoate 3-monooxygenase TERM 3820 4262576 - 4262608 + T 91 -19.1 -2.87211 | overlap 4262573 4262580 4262591 TCTTGCAGCTCCGGC CCGGCCGCCAGGCGA TTG TCGCCTGCCGGCCGA TCTCTCAGGCGGCGT RPE_3809 4263731 - 4262613 - | transposase IS116/IS110/IS902 family protein RPE_3810 4264793 - 4263894 - | LysR family transcriptional regulator TERM 3821 4264231 - 4264188 - G 77 -10.9 -3.85698 | gap 1, opp_overlap 4264191 4264195, overlap 4264189 GCCGGCCTCGACAAA GCGCCACTCCGGCGCGGCGC TGAGC GCGCCGAACCGGA-TGGTGT CGTGGCCGGCGAGCG TERM 3822 4264230 - 4264189 - G 71 -14.4 -2.91276 | gap 1, opp_overlap 4264191 4264195, overlap 4264188 CCGGCCTCGACAAAG CGCCACTCCGGCGCGGCGC TGAGC GCGCCGAACCGGA-TGGTG TCGTGGCCGGCGAGC RPE_3811 4264913 - 4265548 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein RPE_3812 4265557 - 4265877 + | hypothetical protein RPE_3813 4266289 - 4265882 - | hypothetical protein TERM 3823 4266345 - 4266323 - R 73 -11.4 -3.67296 | TAGCATGCAGCCAAA TCGGTTAACG AAC CGTTAACCAA CCGGCCACGAAGCGC TERM 3824 4267251 - 4267229 - R 80 -6.1 -4.68593 | CCGACGAGGCAAAAA GCGGCCTCG ATACG CGTGGCAGC GTCTGAACCGGTCAG RPE_3816 4270034 - 4268751 - | citrate transporter TERM 3825 4270175 - 4270189 + r 81 -12.8 -3.72051 | overlap 4270184 CACACCGGCTTCAAC GGCCCC ATC GGGGCC TTTCCCCTTGTTGAA RPE_3817 4270636 - 4270232 - | hypothetical protein TERM 3826 4270407 - 4270395 - G 74 -5.5 -4.48072 | overlap 4270399 AGATGGATCAGAAAA TCGAG CGG CCCGA GAAACCAGAACCGCG TERM 3827 4270602 - 4270591 - G 79 -2.2 -5.1101 | overlap 4270595 CCAGCATCCAAAAAA TCAG CGCC CCGA CGGCAACCGACGACG TERM 3828 4270655 - 4270697 + r 74 -2.5 -4.90079 | gap 1, opp_overlap 4270639, overlap 4270656 GGCGACCCTTGTTTG AGGCCGACCCGCGGAGCG TTGGGCTC CGGCCCTCG-GTCGGCCA TTTTGTTGTTCGGCT RPE_3818 4271729 - 4270863 - | hypothetical protein TERM 3829 4271759 - 4271816 + r 91 -18.3 -3.21726 | gap 1, overlap 4271752 4271763 AGACCGTGGCGGGCG CGGCCGAGGCGGCGGCCGGCGGCGGC TCGCTCT GCT-CCGCCAGCCGCTGCTCCAGCCG TTCGATGTTCTGGAA RPE_3819 4272410 - 4271742 - | cyclic nucleotide-binding protein RPE_3820 4272594 - 4273379 + | enoyl-CoA hydratase/isomerase TERM 3830 4273387 - 4273397 + T 76 -8.2 -4.15006 | GGTTTTAGGTAGGAG CGCG CAC CGCG TTTTGAAGTCGCTCT TERM 3831 4273429 - 4273482 + T 83 -17 -2.6342 | opp_overlap 4273422 4273472 4273474, overlap 4273427 ACACCAAACCCGAGT CATTCCGGG-ATTCGCTTCGATCGGC CCTC GCCGATCGAA-CGAAGACCCGGAATC TCGCTTCGTTTCCAA TERM 3832 4273516 - 4273472 - T 82 -14.3 -3.37344 | opp_overlap 4273429 4273427 4273502, overlap 4273474 CGCCGATCGAACGAA GACCCGGAATCTCGCTTCGTT TCC AACCGCGCGAGATTCCGGGTT CGCACGCCGCTTCGC TERM 3833 4273514 - 4273474 - T 91 -16.9 -3.25652 | opp_overlap 4273429 4273427 4273502, overlap 4273472 CCGATCGAACGAAGA CCCGGAATCTCGCTTCGTT TCC AACCGCGCGAGATTCCGGG TTCGCACGCCGCTTC RPE_3821 4274273 - 4273587 - | nitroreductase TERM 3834 4274136 - 4274146 + g 79 -2.4 -5.00884 | GGGCTGGCTGTTGCA CCAC GAC GCGG TTTTTTGCGCAGCGT RPE_3822 4275686 - 4274442 - | acyl-CoA dehydrogenase domain-containing protein RPE_3823 4276930 - 4275803 - | acyl-CoA dehydrogenase domain-containing protein TERM 3835 4276432 - 4276479 + g 91 -9 -4.84359 | gap 1, opp_overlap 4276453, overlap 4276459 CGGTCGACGCCGTGC GCGCGG-CGACGATGGCGAAATT GGC GATGCCGCCGTCGGCGACCGGGC TTTTTGTCCCGGTGA TERM 3836 4277018 - 4277073 + r 70 -7.5 -4.10429 | overlap 4277019 CCGGAATCCCGTGCT GCATCT-CGAGATTCCGGGTTCGCGCC AAGT GGCGCGC-CCCGGAATGACGGAGAGGA TTTTGGAGAGTGCTT RPE_3824 4279207 - 4277333 - | acyl-CoA synthetase TERM 3837 4279364 - 4279389 + r 78 -14.7 -3.06696 | CGGCCGTTGTTGTTG CGCCCTCTCCC TGAT GGGAGAGGGCC TGTATTCGGCAGCCC RPE_3825 4280697 - 4279432 - | short-chain dehydrogenase/reductase SDR TERM 3838 4280496 - 4280520 + g 74 -5.5 -4.4634 | overlap 4280493 GGTGTTGGTAGGCGT CGCTGCGTCGG TTT CCTGGGCGGCG TTTCTTGTTGACGTT RPE_3826 4281578 - 4280907 - | TetR family transcriptional regulator TERM 3839 4281108 - 4281093 - G 77 -3.9 -4.82901 | GCTGGTGTAGAAAAA CACCG GATCGA CGGCG CGAAACTCGCCGCTG RPE_3827 4281729 - 4282901 + | acetyl-CoA acetyltransferase TERM 3840 4284363 - 4284385 + G 70 -13.4 -3.04144 | CGTGCTGTTGACCCA CCCCGACGTC GCC GACGTCGCGG TGTTCGGCGTGCCGA RPE_3828 4283089 - 4284633 + | acyl-CoA synthetase TERM 3841 4284644 - 4284615 - T 77 -12.9 -3.62046 | gap 1, opp_overlap 4284615 4284623 CTACTGGCCGAAGAA GGAGAGCGCGGC GGCGTGA GCCGCGC-CTCC GTTTTCATCGCGCGC TERM 3842 4284615 - 4284644 + T 73 -12.9 -3.14848 | gap 1, opp_overlap 4284615, overlap 4284623 CTACTGGCCGAAGAA GGAGAGCGCGGC GGCGTGA GCCGCGC-CTCC GTTTTCATCGCGCGC TERM 3843 4284623 - 4284645 + T 95 -12.6 -4.25104 | opp_overlap 4284615, overlap 4284615 CGAAGAAGGAGAGCG CGGCGGCGTG AGC CGCGCCTCCG TTTTCATCGCGCGCC RPE_3829 4285104 - 4284649 - | resolvase domain-containing protein TERM 3844 4284716 - 4284738 + g 83 -12.6 -4.15029 | TGAAGCGCCGCTCGG GTCCGGGCGG AAA TCGCCCGGCC TTCTTTCTCTGCCAT TERM 3845 4284791 - 4284777 - G 71 -12.8 -3.25942 | AGGTGTGCAGATCAA CCGGCG ACG CGCCGG GCTGGTCCACAGAGA TERM 3846 4285292 - 4285266 - R 78 -11.6 -3.78775 | gap 1, opp_overlap 4285265 GCGCGCATCATGAAA CG-GCGACCGG TTGGCT CCGGTCGCTCG TCGATCCCCGGCTCG TERM 3847 4285335 - 4285351 + r 91 -2.9 -5.44119 | overlap 4285329 ACTTGTTTTGCTCGG GGCCGAT CTT GTTGGTC TTTTTTTAAAGTCAG RPE_3830 4287303 - 4285405 - | outer membrane autotransporter TERM 3848 4285730 - 4285775 + g 70 -10.3 -3.7108 | gap 1, opp_overlap 4285697 4285696, overlap 4285731 CTGCCGACCAGCGCT TCGGCGACCTGATCGCCGACGC TCA GTGTCAGCGC-CGCGTCGCCGG TTTCGGTGTAGGAAT TERM 3849 4286820 - 4286869 + g 72 -5.6 -4.32034 | gap 3, overlap 4286821 TGCCGGCGGTGGCCT GGGCGG--CGCTGGTCGCGGCAGCC GTC GGCACCC-CGGCCAGTGTGCCGCCA TTTTGGTAGTAGTCC RPE_3831 4288115 - 4287513 - | GCN5-related N-acetyltransferase TERM 3850 4287725 - 4287705 - G 75 -13.9 -3.27923 | GCCGAACAGCAGCAA CGCGCCGTG CAC CGCGGCGCG GCAGGCGACATGGCC RPE_3832 4288339 - 4288136 - | hypothetical protein RPE_3833 4288452 - 4289384 + | DNA-binding transcriptional activator GcvA RPE_3834 4289381 - 4289866 + | CinA domain-containing protein RPE_3835 4290491 - 4289868 - | propeptide, PepSY amd peptidase M4 TERM 3851 4290038 - 4290055 + g 74 -7.7 -4.19238 | CATCCGACAGGTTCA GCTTGCT GCGC AGCAGGC TTTTGACGTTGCGGC RPE_3836 4291139 - 4290537 - | hypothetical protein RPE_3837 4291320 - 4291925 + | TetR family transcriptional regulator TERM 3852 4292049 - 4291999 - f 75 -14.7 -2.73994 | gap 1, overlap 4291976 4291996 AGTGCCCCAACATCA GCGTCGTGCGTCGGGCGACCCCAT ATGC ATGGGGTCGTCCGACACCCC-CAC CAGATAGGTGTCGCC RPE_3838 4292093 - 4292362 + | hypothetical protein RPE_3839 4292394 - 4292855 + | hypothetical protein TERM 3853 4292899 - 4292931 + T 91 -16.4 -3.54755 | opp_overlap 4292904, overlap 4292904 TTCGCCATCGCGCAA AAAAAGGCGGCAGC GCGCG GCTGCCGCCTTTTC TGTTCTTTGCGCGGT TERM 3854 4292904 - 4292926 + T 100 -16.3 -4.84673 | opp_overlap 4292904, overlap 4292899 CATCGCGCAAAAAAA GGCGGCAGC GCGCG GCTGCCGCC TTTTCTGTTCTTTGC TERM 3855 4292926 - 4292904 - T 100 -16.3 -5.41143 | opp_overlap 4292904 4292899 CATCGCGCAAAAAAA GGCGGCAGC GCGCG GCTGCCGCC TTTTCTGTTCTTTGC RPE_3840 4293546 - 4292950 - | superoxide dismutase RPE_3841 4294880 - 4293639 - | major facilitator transporter TERM 3856 4294346 - 4294324 - G 75 -9.1 -4.15044 | CGGCCGGCGAAGAAA GCCGCGG GCAGCATCA CCGCGGC GAGGCCGAGGAAGCC RPE_3842 4294992 - 4295516 + | GCN5-related N-acetyltransferase RPE_3843 4295618 - 4296991 + | MATE efflux family protein RPE_3844 4297182 - 4297616 + | hypothetical protein TERM 3857 4297830 - 4297818 - f 73 -3.3 -4.74801 | overlap 4297820 CAAGGCCAGCAAAAA GATCG CAC CGAGC GACTTCACAACGATT TERM 3858 4298474 - 4298453 - g 75 -9.3 -4.06384 | TGCCAAGATCAGAAA GGGCACGGC CAAT GCCGCGCGC GAGCCCGCCATGACC RPE_3845 4298034 - 4299101 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 3859 4299274 - 4299236 - T 100 -29.6 -4.15222 | overlap 4299237 4299257 4299258 ATGTTCGTGAATAAA GCGCGGGCCCGCCCGGCA CAA TGCCGGACGGGCCCGCGG CCAGATCGACTTACA TERM 3860 4299273 - 4299237 - T 100 -33.1 -3.08812 | overlap 4299236 4299257 4299258 TGTTCGTGAATAAAG CGCGGGCCCGCCCGGCA CAA TGCCGGACGGGCCCGCG GCCAGATCGACTTAC RPE_3846 4299584 - 4299285 - | histone family protein DNA-binding protein TERM 3861 4299646 - 4299634 - R 80 -5.5 -4.8083 | opp_overlap 4299644, overlap 4299636 CAATATGAGGAAAAA TCGCC GGA AGCGA CTGGGACAGCGGTTT RPE_3847 4300468 - 4299905 - | phosphoglycerate mutase TERM 3862 4300526 - 4300488 - R 74 -11.7 -3.40403 | gap 1 CCGCGCTCACGACAA GCGCGCCGCGATCACCAC CAGC ACGGCGATCTCGGC-CGC CTGCTCGGCGGCACC RPE_3848 4301273 - 4300479 - | cobalamin 5'-phosphate synthase TERM 3863 4300978 - 4300956 - G 70 -11.3 -3.53012 | gap 1 GCGGCCGCCGCCAAA GCCGTCGCCG ACAT CGGCGA-GGC CGTCCTCGTGCAGCG RPE_3849 4303013 - 4301502 - | ATPase TERM 3864 4301964 - 4301954 - G 72 -8.2 -4.06687 | ACTCCTGATAAAGAA CGCC GAC GGCG CGGAATCCGGCGTCG RPE_3850 4303928 - 4303176 - | ABC transporter related RPE_3851 4304695 - 4303925 - | ABC transporter related RPE_3852 4305927 - 4304692 - | inner-membrane translocator TERM 3865 4305090 - 4305074 - G 71 -13.7 -2.81187 | overlap 4305064 AAATATTTGATCAGA CCGGTGC CGA GCACCGG GCCGAGCAGCGTGCC RPE_3853 4306939 - 4305932 - | inner-membrane translocator RPE_3854 4308524 - 4307172 - | ABC-type branched-chain amino acid transport systems periplasmic component TERM 3866 4307252 - 4307277 + g 72 -14.1 -2.99057 | opp_overlap 4307248, overlap 4307249 4307246 CCTTCGAAGCAGCCA CGATCTGCTTG ATCT CAAGCAGGTCG TACTTGTCTTTCGGC TERM 3867 4308198 - 4308213 + g 72 -4.6 -4.56597 | GGTCTGGGTGTCGCC GGTGAC GAAC GCCACC TTTTTGCCGAGCACG RPE_3855 4309337 - 4308900 - | histidine triad (HIT) protein TERM 3868 4309116 - 4309101 - G 72 -11.8 -3.53012 | opp_overlap 4309094 4309093 4309110 GCCGTCGGCGCCAAA GGCGGC CACG GCCGCC ATCGCGATCTTCTTG TERM 3869 4309511 - 4309484 - H 100 -8.4 -5.44119 | gap 1, overlap 4309486 CTGACGGCAAAAAAA CAGCCCCGG-CAC ATC GCGACCAGGGCTA CAAGTCAAAGGGAGG TERM 3870 4309509 - 4309486 - H 79 -8.8 -4.36089 | gap 1, overlap 4309484 GACGGCAAAAAAACA GCCCCGG-CAC ATC GCGACCAGGGC TACAAGTCAAAGGGA RPE_3856 4309821 - 4312109 + | TonB-dependent receptor TERM 3871 4312242 - 4312204 - T 74 -12.5 -3.28712 | gap 2, overlap 4312158 4312220 TGCCGCTCCGCAGAA CCGGGACCGTCACGAATGC CGA GC-TTGG-GACGGCCCCGG ATCAGCAGAGCACCA TERM 3872 4312281 - 4312252 - T 75 -14.9 -2.82516 | opp_overlap 4312264 CCCCGGATCAGCAGA GCACCACGCCGCC AGGC GGCGGCGCTGCGC TGCGTCCGGGGCACG TERM 3873 4312264 - 4312316 + T 75 -13.9 -3.05384 | opp_overlap 4312252 AGAGCACCACGCCGC CAGGCGGCGGCGCTGCGCTGCGTCC GGG GCACGCAACTCATTGCAGCCGCCGG TTGGCTCCGAAGCGA RPE_3857 4313064 - 4312342 - | ABC transporter related RPE_3858 4313837 - 4313061 - | binding-protein-dependent transport systems inner membrane component TERM 3874 4313617 - 4313653 + g 78 -14.3 -3.53012 | overlap 4313618 ACGATTCCGACCAGC GCGCCGGCGATCCAGCC GAG GGCGGCATTGCCGGCGG TTTGGGCGAGCGCCG TERM 3875 4313618 - 4313652 + g 85 -17.8 -2.71712 | overlap 4313617 CGATTCCGACCAGCG CGCCGGCGATCCAGCC GAG GGCGGCATTGCCGGCG GTTTGGGCGAGCGCC RPE_3859 4314853 - 4313846 - | ABC-type sulfonate transport system periplasmic component TERM 3876 4313969 - 4313926 - G 78 -14.7 -3.24232 | gap 1, overlap 4313924 4313922 4313927 GGTGCTGGAAATAGA TCTCGATGTCTTCTC-GCGC CTGCC GCGCGGAGAGGACATCGAGG CGCACATGAGGCACC TERM 3877 4313968 - 4313927 - G 85 -18.2 -2.54325 | gap 1, overlap 4313926 4313924 4313922 GTGCTGGAAATAGAT CTCGATGTCTTCTC-GCGC CTGCC GCGCGGAGAGGACATCGAG GCGCACATGAGGCAC TERM 3878 4314942 - 4314907 - R 84 -17 -2.82516 | gap 1, overlap 4314938 TCGCTTATCACGAGA GCGCATTCGGTTCCGAC CAA ATCGGAACCGA-CGCGC GCGATTCCCGCCTCT RPE_3860 4316865 - 4315006 - | hydrogenases, Fe-only RPE_3861 4318866 - 4316869 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3879 4319878 - 4319863 - g 74 -10.4 -3.78775 | overlap 4319866 TCTCCCAGGACCAAA GCAGCG AGTT CGCTGC ACGGCGCCGGGCATG RPE_3862 4319701 - 4320945 + | acetate kinase RPE_3863 4320999 - 4323140 + | phosphate acetyltransferase RPE_3864 4323340 - 4324104 + | hypothetical protein TERM 3880 4325305 - 4325332 + G 80 -14.8 -3.38072 | overlap 4325267 GCCAAAACTCTGGCT GGTCGGCGGCGG GTTG CTGCTGCCGGCC TTGGTGTTGGCTCCG RPE_3865 4324088 - 4325770 + | cytochrome c oxidase, subunit II TERM 3881 4326018 - 4326048 + G 72 -6.8 -4.20025 | opp_overlap 4326015 4326020, overlap 4326020 4326023 GGACATCTACAACCA GATCTTCACCATGC ACG GCACGGTGATGATG TTTCTGTTCGCGATT TERM 3882 4326767 - 4326802 + G 75 -4.5 -4.67353 | overlap 4326768 CGTTCTTCTCCTCGG CCAGCACCGCGGTCG CGGTGC CCACCGCAGTGCAGA TTTTTGCCTGGATCG RPE_3866 4325767 - 4328292 + | cytochrome-c oxidase RPE_3867 4328298 - 4328651 + | hypothetical protein RPE_3868 4329150 - 4328725 - | putative monovalent cation/H+ antiporter subunit G TERM 3883 4329121 - 4329100 - G 73 -6.5 -4.30253 | overlap 4329097 4329101 GACAAACAGAAAGAA CGCGCCGAT CAGG ATCAGCGCC GAGACCAGAACTTCG RPE_3869 4329427 - 4329158 - | putative monovalent cation/H+ antiporter subunit F RPE_3870 4329912 - 4329424 - | putative monovalent cation/H+ antiporter subunit E RPE_3871 4331444 - 4329909 - | putative monovalent cation/H+ antiporter subunit D TERM 3884 4330337 - 4330314 - G 77 -3.7 -4.72272 | overlap 4330316 4330317 CGCCGCCACGAAAAA CAGGCCGGC GAACAG GCTGGCATG GGGCAGCGCTGGGGT TERM 3885 4331444 - 4331485 + r 70 -9.9 -3.67564 | TCACCAAGTGATTCA TGGACGCCCCGCCCCCGGC TTGC GCGCGGCGCGCGGCGTCGA TTTCGCTCCCTCGTT RPE_3872 4331809 - 4331441 - | putative monovalent cation/H+ antiporter subunit C RPE_3873 4334686 - 4331810 - | putative monovalent cation/H+ antiporter subunit A TERM 3886 4332020 - 4331977 - G 73 -13.9 -3.14051 | overlap 4331975 CCACGGTGAGGAACA CGCCGAGGTCGAACAGG ATGGCGGTTG CCAGTTCGACCTCGCCG ATCAGCGGCACCGGA TERM 3887 4332134 - 4332080 - G 100 -14.3 -4.36903 | opp_overlap 4332133, overlap 4332074 4332081 4332082 4332084 CCGACCAAACAGAAA CGCACCG-ATCCCGGTCGCCGCCGCGA TGA TCACGCCGGCGCCCAGCATGCGGTG-G CCGTCGATCCGCCTC TERM 3888 4332134 - 4332081 - G 76 -14.5 -3.21419 | gap 1, opp_overlap 4332133, overlap 4332074 4332080 4332082 4332084 CGACCAAACAGAAAC GCACCG-ATCCCGGTCGCCGCCGCGA TGA TCACGCCGGCGCCCAGCATGCGGTGG CCGTCGATCCGCCTC TERM 3889 4332133 - 4332082 - G 85 -18 -2.52128 | gap 1, overlap 4332074 4332080 4332081 4332084 GACCAAACAGAAACG CACCG-ATCCCGGTCGCCGCCGCGA TGA TCACGCCGGCGCCCAGCATGCGGTG GCCGTCGATCCGCCT TERM 3890 4332131 - 4332084 - G 72 -14.8 -2.78414 | gap 1, overlap 4332074 4332082 4332080 4332081 CCAAACAGAAACGCA CCG-ATCCCGGTCGCCGCCGCGA TGA TCACGCCGGCGCCCAGCATGCGG TGGCCGTCGATCCGC TERM 3891 4332626 - 4332574 - G 70 -11.4 -3.4072 | gap 3, overlap 4332578 4332603 CACGCGTCATCACAA CG-TAGG-CCATCG-CGGCGGCGGC CAACCC ACCGCAGCCGGCGATGGTCCCATCG CGGATTCGCCGGGCC TERM 3892 4332977 - 4332938 - G 72 -11.4 -3.61398 | CCGGCCGCCGAAGAA GCCGACCACGCCGACCGC GAGG ACAGTCAGCGTGATCACC GCGAGATAGCGCGGC TERM 3893 4333541 - 4333526 - G 75 -9 -4.03234 | CTCTTTCGACAGAAA GCCGTT CAGC AACGGC ACGCCGGCCATTGAA TERM 3894 4334956 - 4334919 - H 100 -21.4 -3.53761 | CAAGTTGCGTTGAAA GGCGGCATATCGGCGC GCCCGG GAGCCGATATGCCGCC GTGGCGAGCAACGCT TERM 3895 4336832 - 4336808 - g 70 -10.7 -3.54029 | GTTGAGCAACGAGAA GGTTCAGAGCA CCG TGCTCCGCACC GCCGTGTCGCTATGG RPE_3875 4336455 - 4336961 + | hypothetical protein TERM 3896 4337821 - 4337770 - g 83 -15.4 -3.61517 | gap 3, opp_overlap 4337768 ACGGTGCTGGAAGAA GGACGG-C-TGGTGATCATCGCCGA GCGCG TCGGCGATG-CCACCACGACCGCCC GCATTTCCCACTTCA RPE_3876 4336969 - 4339095 + | heavy metal translocating P-type ATPase RPE_3877 4339119 - 4339370 + | hypothetical protein RPE_3878 4340676 - 4339489 - | Fis family transcriptional regulator RPE_3879 4341415 - 4340864 - | hypothetical protein RPE_3880 4342152 - 4341412 - | hypothetical protein RPE_3881 4343629 - 4342241 - | nitrogenase RPE_3882 4344068 - 4343640 - | nitrogenase TERM 3897 4343919 - 4343937 + g 73 -13.2 -3.26433 | overlap 4343922 CCAGCCGCGAGAGTT GAACTGCC AGA GGCAGTTC TTCATGATGTAGTTC TERM 3898 4343922 - 4343934 + g 71 -9.1 -3.76482 | overlap 4343919 GCCGCGAGAGTTGAA CTGCC AGA GGCAG TTCTTCATGATGTAG RPE_3883 4345654 - 4344080 - | nitrogenase alpha chain nifH 4346546 - 4345719 - | nitrogenase reductase TERM 3899 4346200 - 4346188 - G 75 -3.3 -4.79752 | opp_overlap 4346189, overlap 4346189 4346190 TCGAAGAACACAAAA TCGAG GTC CTCGG TATAGGCCTCGTTTT TERM 3900 4346189 - 4346211 + g 77 -5.6 -4.67982 | gap 1, opp_overlap 4346188 4346189 4346190 CGAAGAACACAAAAT CGAGGTCCT CGGTAT AGG-CCTCG TTTTCTTCCATCAGA TERM 3901 4346631 - 4346655 + r 78 -6.4 -4.65895 | gap 1, opp_overlap 4346613, overlap 4346625 CTGTGCCAATCGCGG TGTCG-CGCGC TCGC GCGCCTCGACA TTTTTGGCTCAACGG TERM 3902 4346957 - 4346944 - R 71 -8.1 -3.90744 | CGTGGGTGCAAAGAA GTCGC TCAC GCGAC GGGTTGCGCGCGACG RPE_3885 4348703 - 4347045 - | NifA subfamily transcriptional regulator RPE_3886 4349689 - 4348970 - | hypothetical protein TERM 3903 4351182 - 4351159 - g 73 -6.6 -4.42806 | TCACGCCGAAAGAAA TCGGCCAAGC GTTT GCCCGGCTGA AGGCCGCGACGGCCG RPE_3887 4349748 - 4351247 + | GntR family transcriptional regulator RPE_3888 4352138 - 4351299 - | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase RPE_3889 4352493 - 4353485 + | ABC sulfate transport system, periplasmic binding protein TERM 3904 4354020 - 4354045 + G 73 -11.1 -3.64599 | overlap 4354021 4354025 CGGACCTCGCCGTGA TGCTGTCGCCG GCGC TGGCGACGGCG TTTGCGATCTCCTGG RPE_3890 4353485 - 4354321 + | binding-protein-dependent transport systems inner membrane component RPE_3891 4354315 - 4355040 + | ABC transporter related RPE_3892 4355388 - 4356200 + | aspartate/glutamate/uridylate kinase TERM 3905 4356715 - 4356732 + G 84 -14.1 -3.96148 | CGGATCCCGACCCAC CGCGCCG ACAC CGGCGCG TTTCTGCTCGCCGAC RPE_3893 4356214 - 4357041 + | aspartate/glutamate/uridylate kinase TERM 3906 4357056 - 4357078 + T 80 -14.9 -3.17075 | opp_overlap 4357051 4357050 AGCGCACAATCCGAA TGCGCCGTG CTGGT CACGGCGCA TTCCCTTCCCCCGCC TERM 3907 4357198 - 4357168 - T 81 -7.5 -4.4261 | overlap 4357169 4357184 4357185 GTTCCAACATTAAAA TCATCGGCGGC GAAAACGGT GCCGCCGACGG TCCGTCGGCCGACAA RPE_3894 4357942 - 4357376 - | cytochrome B561 TERM 3908 4357893 - 4357915 + g 100 -22 -3.10677 | overlap 4357884 CAGACTTTGACCTCA GCCGGCGGCG TGG CGCCGCCGGC TTCGATGGATTGGTT RPE_3895 4358287 - 4357952 - | hypothetical protein RPE_3896 4358385 - 4358714 + | membrane protein-like protein TERM 3909 4359226 - 4359239 + G 72 -4.5 -4.52589 | TGCAGGCGGCATTGA CGTCG GCGT TGACG TTTTCTGTCGGCGCG RPE_3897 4358775 - 4359470 + | hypothetical protein RPE_3898 4361298 - 4359964 - | ferric reductase domain-containing protein TERM 3910 4361628 - 4361601 - g 78 -14.8 -3.25823 | overlap 4361604 CTCGGCGCACACGAA CAACGGGCCGCC TTTC GGCGGCCTGTCG CAACAAGTTTGGGCA TERM 3911 4361625 - 4361604 - g 83 -12.9 -3.7732 | overlap 4361601 GGCGCACACGAACAA CGGGCCGCC TTTC GGCGGCCTG TCGCAACAAGTTTGG RPE_3899 4361445 - 4361687 + | hypothetical protein RPE_3900 4362250 - 4361651 - | hypothetical protein RPE_3901 4362851 - 4362378 - | hypothetical protein RPE_3902 4363092 - 4362928 - | hypothetical protein RPE_3903 4364256 - 4364531 + | CsbD family protein TERM 3912 4364647 - 4364689 + T 76 -11.3 -3.72742 | gap 1, overlap 4364625 4364648 CCCGCCCCTTGGCGA GGGCAGGATCGGGAGAGTGA TCAT TC-CTCTCCCGATCCCGACG TTCTCTTCATCGTGC TERM 3913 4364648 - 4364688 + T 77 -14.8 -2.83163 | gap 1, overlap 4364625 4364647 CCGCCCCTTGGCGAG GGCAGGATCGGGAGAGTGA TCAT TC-CTCTCCCGATCCCGAC GTTCTCTTCATCGTG RPE_3904 4366697 - 4365201 - | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 3914 4365441 - 4365390 - G 70 -8.5 -4.02817 | overlap 4365387 4365391 GCCGGAGAAGAAGAA GC-CGGCGGCCTCGCACGCGGCGCA CACC CGCGCGGCGACCG-GATCGCCGAGC GGCAGATCAAGATAG RPE_3905 4369411 - 4366694 - | coenzyme F390 synthetase-like protein TERM 3915 4367803 - 4367765 - G 93 -18.8 -3.36273 | GCTCGCGAATACGAA GCCGCCCGCGGTTTCGTC GGT GACGAAGCCGTGGCCGGC CGGCGGCATATGCGA RPE_3906 4370566 - 4369427 - | acyl-protein synthetase, LuxE TERM 3916 4370505 - 4370481 - G 79 -3.4 -5.00884 | opp_overlap 4370488 ATCGCCGCCAAAAAA CACGCATCGC TGTCG GCGTTGTGCG CAAAGGCGTCCGGCA RPE_3907 4371867 - 4370563 - | coenzyme F390 synthetase-like protein RPE_3908 4373236 - 4371869 - | putative phenylacetate-CoA ligase RPE_3909 4374589 - 4373291 - | major facilitator transporter TERM 3917 4374255 - 4374217 - G 70 -11.7 -3.47307 | gap 2, overlap 4374208 4374218 CGAACAGCACGACAA TGTCGGCGCTG-TGC-GGC AGT GCCTGCATCAGCGCCGCCG CGCCGAGGAACAGAC TERM 3918 4374254 - 4374218 - G 72 -15.2 -2.67902 | gap 2, overlap 4374208 4374217 GAACAGCACGACAAT GTCGGCGCTG-TGC-GGC AGT GCCTGCATCAGCGCCGCC GCGCCGAGGAACAGA TERM 3919 4374391 - 4374411 + g 85 -18.3 -2.70932 | CGATGTACCATGGCA CCAGCGCCG CCC CGGCGCTGG TAGTTAGAAACCACA TERM 3920 4374646 - 4374626 - H 77 -13.9 -3.30441 | GAGTACTGGCGACAA CGCGGCGGC CGC GGCGCCGCG GGCGGGCGTCCAGCA TERM 3921 4374869 - 4374886 + H 71 -11.3 -3.44051 | TTGTTGTCGATGATC TGACGGG GCGG CCCGTCA TTCTGCTGCTCGGGA TERM 3922 4375127 - 4375116 - g 75 -7.2 -4.3953 | opp_overlap 4375118, overlap 4375117 GCCAAGCAGAACAAA GCCG CCGG CGGC CGCACGGTGTTTGCA RPE_3910 4374909 - 4375241 + | anti-sigma-factor antagonist RPE_3911 4375243 - 4375689 + | putative anti-sigma regulatory factor, serine/threonine protein kinase RPE_3912 4375686 - 4376678 + | ABC transporter substrate-binding protein RPE_3913 4376665 - 4378590 + | serine phosphatase TERM 3923 4378873 - 4378910 + F 75 -12.1 -3.61946 | gap 1, opp_overlap 4378883 4378907, overlap 4378871 4378876 4378883 4378907 GGAACAGAGGTCAAC TC-ATGAAAAAGCCCGCC AGA GGCGGGCTAATTCATTGA TATTTCTATCAAATC TERM 3924 4378876 - 4378906 + F 79 -14 -3.52522 | opp_overlap 4378883, overlap 4378873 4378871 4378883 ACAGAGGTCAACTCA TGAAAAAGCCCGCC AGA GGCGGGCTAATTCA TTGATATTTCTATCA TERM 3925 4378883 - 4378899 + F 79 -15.1 -2.87012 | opp_overlap 4378883, overlap 4378876 4378873 4378871 TCAACTCATGAAAAA GCCCGCC AGA GGCGGGC TAATTCATTGATATT TERM 3926 4378899 - 4378883 - f 100 -15.1 -4.77157 | opp_overlap 4378883 4378876 4378873 4378871 TCAACTCATGAAAAA GCCCGCC AGA GGCGGGC TAATTCATTGATATT RPE_3914 4379303 - 4380736 + | aldehyde dehydrogenase RPE_3915 4380835 - 4382442 + | glucose-methanol-choline oxidoreductase TERM 3927 4382455 - 4382495 + T 73 -13.2 -3.18571 | gap 1, opp_overlap 4382448, overlap 4382453 4382451 4382450 TAACCAAGGCGGTCA TTCCGGG-GCGCGCGGCGC GACA GCGGCGGGCGAACCCGGAA TCTCTCTTTGCGACA RPE_3916 4383352 - 4382591 - | short-chain dehydrogenase/reductase SDR TERM 3928 4383284 - 4383321 + g 70 -3.9 -4.49958 | gap 1, opp_overlap 4383271, overlap 4383287 CACGCGGGCGAATTG CCG-CCCCAGCCCCTGCG AGG CGCCGGTGATGAGGATGG TTTCTTTACTGACGT TERM 3929 4383648 - 4383680 + G 76 -6.2 -4.46212 | gap 1, overlap 4383626 CGGCCCCGGCCTGCT GCCGGGGCAGAACTC GCTG GTGTTC-GTCGCGGC TTTTCTGGTCAGCGG RPE_3917 4383472 - 4383987 + | colicin V production protein RPE_3918 4384114 - 4384896 + | short-chain dehydrogenase/reductase SDR TERM 3930 4384930 - 4384909 - T 100 -14.5 -5.38047 | TAGCCACACAAAAAA GGCGATCAC GGGG GTGATCGCC CAGACCGAGCGGGGA RPE_3919 4385588 - 4384956 - | two component LuxR family transcriptional regulator RPE_3920 4385861 - 4386904 + | hypothetical protein TERM 3931 4387932 - 4387919 - g 72 -4.5 -4.56597 | overlap 4387926 4387930 CTGGTGGCGGAAAAA GGACC AATT GATCC GCGAGGCGCAGGCCG TERM 3932 4388837 - 4388810 - g 75 -14.2 -3.2794 | overlap 4388828 CTCGACCCAGACCAA CACCGCCTCG GATGGAAA CGAGGCGGTG ACCGCGGCGACCCGG RPE_3921 4386990 - 4389527 + | multi-sensor hybrid histidine kinase TERM 3933 4389534 - 4389586 + T 79 -14 -3.53012 | gap 1 GCCGTCTGATCGTCG CAGGCGAGAGC-CGGCATCGCGCCG GCGA CGGCGCAGTGCGGCGCTTACGCCAG TTTCCGGGCAGGCCC RPE_3922 4390828 - 4389578 - | response regulator receiver modulated diguanylate phosphodiesterase RPE_3923 4391286 - 4390975 - | hypothetical protein RPE_3924 4392183 - 4391302 - | MCP methyltransferase, CheR-type RPE_3925 4392728 - 4392237 - | CheW protein RPE_3926 4395556 - 4392734 - | CheA signal transduction histidine kinases TERM 3934 4393511 - 4393491 - G 77 -10.3 -3.93695 | GTCACCAGCGACAAA GGCACCGCC TTG GGCTGCGCC GTGCCGGCGCGGAAC TERM 3935 4395640 - 4395669 + r 75 -12.1 -3.57144 | opp_overlap 4395639 4395642 CCGTCTTTTCAAACT CAGATTGCCCACC TCGC GGGGGGCGGTCTG TTTCAGCCTGCAACA RPE_3927 4396068 - 4395715 - | hypothetical protein TERM 3936 4396192 - 4396181 - R 100 -7.2 -5.28942 | CAGCGCAAACAAAAA GCCG CACT CGGC CCGACCAGTCGTACG TERM 3937 4396244 - 4396212 - R 83 -14.9 -3.41051 | opp_overlap 4396217, overlap 4396217 CCAGTCGTACGACAA CAAAAGGGCCGCGCA ATG CACGCGGCCCTTTTT GGCGAGCTTGACGAG TERM 3938 4396217 - 4396239 + r 100 -13.4 -4.58283 | opp_overlap 4396212 4396217 CGTACGACAACAAAA GGGCCGCG CAATGCA CGCGGCCC TTTTTGGCGAGCTTG TERM 3939 4396239 - 4396217 - R 100 -14.8 -4.81212 | opp_overlap 4396217, overlap 4396212 CGTACGACAACAAAA GGGCCGCGCA ATG CACGCGGCCC TTTTTGGCGAGCTTG RPE_3928 4398309 - 4396291 - | methyl-accepting chemotaxis sensory transducer TERM 3940 4396722 - 4396696 - G 74 -12.3 -3.62096 | overlap 4396697 CGCCACCACGGCAAA GC-CGCGCCCGGC TTC GCCGG-CGCGCGC GGCCTCGATGGTGGC TERM 3941 4397759 - 4397743 - G 93 -7.2 -5.24129 | overlap 4397745 GCCGGTCACAAAAAA GCGCCA GCCCG CGGCGC TGATCGCGTCATGAG TERM 3942 4398477 - 4398510 + r 86 -12.3 -4.22346 | gap 1, opp_overlap 4398462, overlap 4398480 CCTAGGCGCCACCCA GC-GGCCGGAGCCGCC CGA GGCGGCACCGGCTTGA TTTTGCATGGGTTTG TERM 3943 4398480 - 4398506 + r 100 -20.8 -3.69605 | opp_overlap 4398462, overlap 4398477 AGGCGCCACCCAGCG GCCGGAGCCGCC CGA GGCGGCACCGGC TTGATTTTGCATGGG RPE_3929 4400525 - 4398558 - | methyl-accepting chemotaxis sensory transducer RPE_3930 4401264 - 4400761 - | response regulator receiver protein TERM 3944 4401226 - 4401236 + g 79 -8.2 -4.40572 | overlap 4401222 CGTATCGCCCAGCAG CGGC GCC GCCG TTTTGTCGAGCTTGT TERM 3945 4401897 - 4401918 + H 88 -17.3 -3.04263 | ATGCTTTAGTGCCAC GCGCCGCGA AGAT TCGCGGCGC TGTTCGCGATCAAGT TERM 3946 4402232 - 4402210 - g 73 -4 -4.60889 | overlap 4402211 AACTACGCGGAAAAA CTGGCGGC GATCGCG GCCACCCG CCGCGTCAAGGGCGT RPE_3931 4402072 - 4402722 + | transport-associated RPE_3932 4404255 - 4402807 - | serine/threonine protein kinase TERM 3947 4403129 - 4403141 + g 74 -5.5 -4.43844 | overlap 4403130 TGCTTGTTGTGGCCG TGCTC GTC GAGCG TTTTGTCGATGGTGA TERM 3948 4404020 - 4404008 - G 84 -9.1 -4.56597 | overlap 4404010 GGCTGCGCCGAAAAA TCGCC GGC GGCGA CGTAGGCCGGCACAT RPE_3933 4404998 - 4404258 - | metallophosphoesterase RPE_3934 4405286 - 4405714 + | hypothetical protein RPE_3935 4405974 - 4407656 + | magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase TERM 3949 4407823 - 4407770 - g 71 -14.7 -2.55015 | gap 3, opp_overlap 4407773, overlap 4407766 ACGCGATGCAAGCGA TCTTCGCGGA-GGCGG--GCGCCAGC GATTG GCTGGCGCAACCGCCCTCCGAGATGA TCGACGAAAAGCGGG TERM 3950 4407844 - 4407895 + G 75 -13.7 -3.30124 | gap 2, opp_overlap 4407835, overlap 4407843 GAAAAGCGGGTGGCG TCGATCCACCAGGCGGTGCGGCGGC TGTT GCCGCCGGATCGCGCGGTGG--CGA TTCTCAGCGATGCCG RPE_3936 4407667 - 4408389 + | bacteriochlorophyll 4-vinyl reductase RPE_3937 4408432 - 4409784 + | coproporphyrinogen III oxidase TERM 3951 4409852 - 4409820 - f 95 -20 -3.21099 | gap 1, opp_overlap 4409820 GCGTTCGACGATCAA TGGCACGGC-GCAGC CTCG GCTGCCGCCGTGCCA TTTTTTTGTGCTGCC TERM 3952 4409820 - 4409852 + F 100 -20 -5.67063 | gap 1, opp_overlap 4409820 GCGTTCGACGATCAA TGGCACGGC-GCAGC CTCG GCTGCCGCCGTGCCA TTTTTTTGTGCTGCC TERM 3953 4409866 - 4409881 + F 81 -11.8 -3.84825 | CATTTTTTTGTGCTG CCGCCC GAGG GGGCGG TTTGATCTAGCTCAA RPE_3938 4410043 - 4410330 + | hypothetical protein TERM 3954 4411082 - 4411100 + G 80 -14.6 -3.4072 | GGCCAAGGCGAAGCG CGACGGCT GCG AGCCGTCG TTGTCCTGCGGCCTG TERM 3955 4411185 - 4411153 - g 72 -7 -4.26076 | gap 1 CCAGCCTGACCAAAA CGATCTTCGG-TCCG CCGC CGAAGCCGAAGCCCG GCCGCAGCTAATCGC RPE_3939 4410513 - 4411196 + | hypothetical protein RPE_3940 4411481 - 4411206 - | hypothetical protein TERM 3956 4411438 - 4411448 + g 70 -2.4 -4.63527 | overlap 4411424 ACCTGGCCTTCGATC CGGC TCA GGCG TTTTTGGCATGATGC TERM 3957 4413896 - 4413869 - g 100 -20.6 -3.34962 | GCTGACAGGCGACAA CCGCACCACCGC GCTG GCGGTGGCGCGG CGGCTCGGCATCGCC RPE_3941 4411554 - 4414340 + | heavy metal translocating P-type ATPase RPE_3942 4414534 - 4415115 + | hemerythrin HHE cation binding domain-containing protein TERM 3958 4415135 - 4415094 - T 70 -12.1 -3.18776 | gap 1, opp_overlap 4415113, overlap 4415092 4415088 GGAAACCGAGGAACA GCGCGGCACCAGCGCG-GCC TGA GGCTCGCGCGCGCGACACGC GTGTCCCGGGCGCGA TERM 3959 4415113 - 4415157 + T 71 -9.2 -3.72592 | gap 1, opp_overlap 4415094 4415092 4415088 GGCACCAGCGCGGCC TGAGGC-TCGCGCGCGCGACA CGCG TGTCCCGGGCGCGATGCGGCA TTCTTCATGCCGCTT TERM 3960 4415227 - 4415256 + T 78 -14.9 -3.05384 | opp_overlap 4415227 GCCCCAGCTCAGCAA CGCACCACGCCGC AAGG GCGGCGCGCTGCG TTGCGTCCGGGGCAC TERM 3961 4415256 - 4415227 - T 89 -17.1 -3.16564 | opp_overlap 4415227 GCCCCAGCTCAGCAA CGCACCACGCCGC AAGG GCGGCGCGCTGCG TTGCGTCCGGGGCAC RPE_3943 4415661 - 4415305 - | putative 6-pyruvoyl tetrahydropterin synthase TERM 3962 4415877 - 4415867 - H 76 -6.8 -4.43477 | opp_overlap 4415867 TTTATCGAATCAAAA CCAC GCT GTGG TTTCTGCGATTGAGG RPE_3944 4416006 - 4417208 + | diguanylate cyclase RPE_3945 4417240 - 4417860 + | N-acetylmuramoyl-L-alanine amidase RPE_3946 4418076 - 4418447 + | hypothetical protein RPE_3947 4418565 - 4418867 + | hypothetical protein RPE_3948 4419313 - 4418873 - | hypothetical protein RPE_3949 4419580 - 4419320 - | prevent-host-death family protein RPE_3950 4419796 - 4420155 + | putative insertion sequence transposase protein RPE_3951 4420232 - 4420744 + | putative insertion sequence transposase protein RPE_3952 4421433 - 4420756 - | ABC transporter related RPE_3953 4422652 - 4421426 - | hypothetical protein TERM 3963 4421695 - 4421675 - G 75 -3.1 -4.72272 | overlap 4421678 GCCCTGGATCAAAAA CACCCGCAG GAT CTGCTCGCG CCGCGTGCCCATCGC RPE_3954 4423926 - 4422649 - | RND family efflux transporter MFP subunit TERM 3964 4424407 - 4424427 + G 72 -4.5 -4.56597 | GCTGCGCGTGATCAT CCCCGATCG CCC CGGCCAGGG TTTTTCCGAGCCCGG RPE_3955 4424126 - 4425097 + | alpha/beta hydrolase fold TERM 3965 4425241 - 4425218 - f 76 -7.4 -4.36914 | gap 1, opp_overlap 4425219, overlap 4425220 4425221 GCCCGCCCCATAAAA CACGCCCGCAG CGG CTGCGAGCA-G AATTGTGACGATAAT TERM 3966 4425240 - 4425220 - f 76 -11.1 -3.79419 | opp_overlap 4425219, overlap 4425218 4425221 CCGCCCCATAAAACA CGCCCGCAG CGG CTGCGAGCA GAATTGTGACGATAA RPE_3956 4425450 - 4425695 + | hypothetical protein RPE_3957 4425815 - 4426318 + | hypothetical protein RPE_3958 4426878 - 4426465 - | methionine sulfoxide reductase B RPE_3959 4427623 - 4426910 - | methionine sulfoxide reductase A TERM 3967 4427651 - 4427697 + H 75 -12.3 -3.64283 | gap 2, opp_overlap 4427682, overlap 4427644 4427649 4427687 4427694 GATTGATTGGCAGCG CCGACCGAGACGCTGGCGTTCCT TCA AGATACGC-AGCGTCGCGG-CGG TTGTTACGGCGTTTG TERM 3968 4428167 - 4428186 + H 100 -10.6 -5.60993 | opp_overlap 4428166 CGCCTGACAGTCAAG GGACGCGC GGCC GCGCGCCC TTTTTTTGTGCCCGG carB 4428232 - 4431561 + | carbamoyl phosphate synthase large subunit greA 4431782 - 4432264 + | transcription elongation factor GreA TERM 3969 4432287 - 4432320 + F 100 -18.3 -3.55548 | gap 1, opp_overlap 4432294, overlap 4432289 4432294 CTGATCGTCGAAGAC GCTGAAAGGCCGCAGC CCC GCTGCGGCCTTTT-GC TTTGACGGCGTATTG TERM 3970 4432289 - 4432319 + F 86 -18.4 -2.73007 | opp_overlap 4432294, overlap 4432287 4432294 GATCGTCGAAGACGC TGAAAGGCCGCAGC CCC GCTGCGGCCTTTTG CTTTGACGGCGTATT TERM 3971 4432314 - 4432294 - f 100 -18.3 -3.6106 | opp_overlap 4432289 4432287 4432294 TCGAAGACGCTGAAA GGCCGCAGC CCC GCTGCGGCC TTTTGCTTTGACGGC TERM 3972 4432294 - 4432314 + F 100 -18.3 -4.54727 | opp_overlap 4432294, overlap 4432289 4432287 TCGAAGACGCTGAAA GGCCGCAGC CCC GCTGCGGCC TTTTGCTTTGACGGC RPE_3962 4432439 - 4432855 + | DoxX family protein RPE_3963 4433328 - 4432852 - | AsnC family transcriptional regulator TERM 3973 4433377 - 4433403 + H 83 -6.6 -4.86731 | AAATCGGCCACCGTT TTATCCCGCTTG GCG CAAGTTGGGTAA TTTTATTTCGCAAAA RPE_3964 4433588 - 4434553 + | thioredoxin reductase RPE_3965 4434556 - 4435479 + | LysR family transcriptional regulator TERM 3974 4435656 - 4435677 + T 100 -12.3 -5.40474 | gap 1, overlap 4435657 TTACGGCCAACCTCA G-CCGGGCTC AGC GAGCCCGGTC TTTTTTTGCGCGCAT TERM 3975 4435657 - 4435675 + T 100 -16 -4.34482 | overlap 4435656 TACGGCCAACCTCAG CCGGGCTC AGC GAGCCCGG TCTTTTTTTGCGCGC TERM 3976 4435754 - 4435729 - T 76 -6.8 -4.46212 | overlap 4435730 TCGGGTACGACAAAA TCCGCTTCAC GCCAAG GCGAAGCGGC GTTGCAACCTTTCCT RPE_3966 4436508 - 4435828 - | cobyrinic acid a,c-diamide synthase RPE_3967 4437016 - 4436675 - | hypothetical protein RPE_3968 4437551 - 4437198 - | hypothetical protein RPE_3969 4437915 - 4437622 - | hypothetical protein RPE_3970 4438170 - 4438769 + | GPR1/FUN34/yaaH family protein RPE_3971 4438815 - 4439366 + | cache type 2 domain-containing protein TERM 3977 4439456 - 4439431 - T 78 -15.5 -2.79098 | overlap 4439392 4439428 GCCATGCACCAAGCA CGTCGATGGCA GCTG CGCCATCGACG ATACCTGCCTGAGCT RPE_3972 4441372 - 4439525 - | ABC transporter related TERM 3978 4440849 - 4440831 - G 73 -12.4 -3.45788 | overlap 4440829 4440832 4440842 GCGTAGAAGATAAGA CCGCCAGC GAA GCTGGCGA CGGTCACCAGGTCCT TERM 3979 4441856 - 4441882 + G 77 -7.9 -4.32034 | GGTTGTGTTGCTTCA TGCCGCTGCCG CATTA TGGCGCCGGCA TTTTCGTCATGATGC RPE_3973 4441545 - 4441940 + | hypothetical protein RPE_3974 4442374 - 4441946 - | hypothetical protein RPE_3975 4442967 - 4442593 - | hypothetical protein RPE_3976 4443575 - 4442961 - | 4-hydroxybenzoyl-CoA thioesterase RPE_3977 4444230 - 4443694 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 3980 4444321 - 4444291 - R 71 -8.3 -3.90112 | gap 1, opp_overlap 4444291 4444292, overlap 4444292 CCGTGCCGAACGAAA TTCCAA-CGGCGCG TGAT CGCGCCGGTTAGAC TTTGCGAAGTTCACC RPE_3978 4444921 - 4444316 - | PadR-like family transcriptional regulator RPE_3979 4446027 - 4445101 - | LysR family transcriptional regulator TERM 3981 4445614 - 4445630 + g 70 -2.1 -4.67608 | opp_overlap 4445610, overlap 4445611 CCCGGAAGCAAGCCG CTCGAGC AAC GCGTGGG TTTTGTCTTCGCGTA RPE_3980 4446130 - 4447020 + | beta-lactamase domain-containing protein RPE_3981 4447056 - 4447781 + | peroxidase TERM 3982 4448004 - 4448037 + G 83 -14.5 -3.64822 | gap 1 GTGGGCGTGGCCGAG CCGCACGTCGCGCTGG GCA CCGGCGCGCTG-GCGG TTTCGGTCAACGCCT TERM 3983 4448291 - 4448331 + G 77 -15.4 -3.04144 | gap 2, overlap 4448320 GAGGCTTTGCATCCA GGCCGGGCTTGCCGCGCTGG CCG CCGGCGCGGC--GTCGGGCC TGTTCGGGATCGGCG RPE_3982 4447878 - 4448666 + | hypothetical protein RPE_3983 4449176 - 4448703 - | thioesterase superfamily protein RPE_3984 4449696 - 4449322 - | hypothetical protein RPE_3985 4451025 - 4449709 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3984 4450050 - 4450040 - G 72 -8.2 -4.09511 | overlap 4450027 AACACCTCCGGAAAA CGCC GGT GGCG CAGTGTCGCCTGGTC TERM 3985 4451230 - 4451250 + H 90 -8.2 -4.89477 | opp_overlap 4451230, overlap 4451236 CAAAGTCCGACAGCA CCGCGTGT ACACC GCGCGCGG TTTTCTTCTTCGAGC TERM 3986 4452256 - 4452234 - g 77 -16.2 -2.75957 | opp_overlap 4452230 4452226 4452219, overlap 4452225 CAGCAATCCGAACGA GCCCGGCGCG ATG CGCGGCGGGC CGATGTTCGAGTTTC TERM 3987 4452342 - 4452388 + G 75 -9.2 -4.08216 | gap 1, overlap 4452338 CGTATTCTTCAGCCC GGCCGCGCGGCCCGGCGCCCG GCTCGG CGAGCGCGCGGTCGA-CGGCC TTTTGGCGGAGATGA RPE_3986 4451779 - 4452906 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase RPE_3987 4456010 - 4452945 - | acriflavin resistance protein TERM 3988 4454374 - 4454357 - G 73 -12.7 -3.44051 | overlap 4454361 GTTCGAGGATGACAA CCGACCG GCCG CGGTCGG CCGCGGGCATGAAGT TERM 3989 4454445 - 4454433 - G 75 -3.3 -4.7373 | overlap 4454436 4454438 GGAGGCGACGAAAAA CACGA GGC CCGCG CCGATCGTGATCCAG RPE_3988 4457098 - 4456007 - | RND family efflux transporter MFP subunit RPE_3989 4457348 - 4458064 + | two component transcriptional regulator TERM 3990 4458488 - 4458498 + G 71 -3.2 -4.58395 | overlap 4458485 4458484 CCTTCGGGGTGTTGC CGGT GGC ACTG TTTTTCGCCAATCGC TERM 3991 4459278 - 4459239 - g 81 -8.4 -4.44277 | gap 1, opp_overlap 4459260 4459262 4459263 CATCAAAATCGAAAA CGGCCGGCTGCGCGGTTTG CTG CAGACCGTGCGGCTG-CCG GCACGGCCATCTTCG RPE_3990 4458103 - 4459296 + | histidine kinase RPE_3991 4460705 - 4459392 - | patatin RPE_3992 4461939 - 4460848 - | hypothetical protein TERM 3992 4461814 - 4461800 - G 72 -8.5 -4.07568 | CTGCCGCTGGCAAAA GGCGC CGCGC GCGCC AATGTGACCAGCATC TERM 3993 4462030 - 4462088 + H 90 -19.7 -2.80879 | opp_overlap 4462070, overlap 4462031 AAGTTGCTGCTTGAC CGGCGTTTGTGACGAAAGATGTCCAGG CGTTT CGAGGACAGCCTTCGTTACAAACGCCG CTTCTTCCGCTTAGT RPE_3993 4462125 - 4462841 + | two component transcriptional regulator RPE_3994 4463112 - 4464341 + | phage integrase family protein RPE_3995 4464969 - 4464475 - | hypothetical protein RPE_3996 4466173 - 4465349 - | hypothetical protein TERM 3994 4465912 - 4465934 + g 73 -4 -4.61566 | GCGGCTGTGGCGCAG CGGGGAGAGG TTG CCGTTTCTCG TTTTGTAATTTGAGG RPE_3997 4467731 - 4466178 - | hypothetical protein RPE_3998 4470149 - 4467741 - | hypothetical protein RPE_3999 4473208 - 4470146 - | hypothetical protein TERM 3995 4470209 - 4470228 + g 89 -10.6 -4.24342 | opp_overlap 4470200 CAGATAGCCTTTGAC GGCACGCC AGCA GGCGAGCC TTTCTTCATGGCGCG TERM 3996 4470620 - 4470646 + g 77 -10.2 -3.94188 | GATCGTTTCCAGTTG GTCGAGACGA AGACCTC TCGTCTCGGC TTCTTTGCGATCGAT TERM 3997 4472109 - 4472154 + g 70 -2.4 -4.67942 | gap 1, opp_overlap 4472117 4472118, overlap 4472110 TCCGAGCGCATAACA TCGAGAAACCGCGCATGCGCC TCATC GGCCAGCGCGCGCTTTC-CGG TTTTGCTTTCTTGGA TERM 3998 4472196 - 4472212 + g 71 -9.3 -3.81146 | ATGTGATCACCCAGG GCCGTCG GAC CGTCGGC TTCTTCATTGCCACC TERM 3999 4472640 - 4472608 - G 74 -7.6 -4.2828 | CCGTATCGATGAAAA CCGCACCCGCCG CGTCGGTTT CGGCAAGAGCGG CGTCGATAGCTTCGA TERM 4000 4473235 - 4473213 - R 71 -9 -3.78775 | TGGTCCATCATGAAA GCGGCCCGTC AAT GACGGTGCGC ACGGCCGCGCGTGCC RPE_4000 4474446 - 4473205 - | peptidase S1 and S6, chymotrypsin/Hap TERM 4001 4473345 - 4473324 - G 74 -14.5 -3.03124 | opp_overlap 4473323 CTTCAGCCCGGAATA GGCAAAGGC GCCG GCCTTTGCC GTCTTCCACCCACTC TERM 4002 4475227 - 4475206 - g 77 -10.1 -3.92542 | CGCAGCGGCAAACAA GACGCGCAA TACT CTGCGCGCC AACATCGCCAATTAC RPE_4001 4474655 - 4475353 + | hypothetical protein RPE_4002 4475475 - 4475951 + | hypothetical protein RPE_4003 4476103 - 4477347 + | hypothetical protein RPE_4004 4477344 - 4478327 + | hypothetical protein TERM 4003 4478520 - 4478556 + F 100 -18.1 -4.22338 | opp_overlap 4478529, overlap 4478521 4478529 GAAAGTATTCGATTT TGCAGGAAAGCCGCGGT TTG ACCGCGGCTTTGTTGCG TTTTGGGATTCTCAT TERM 4004 4478521 - 4478555 + F 93 -19.4 -3.1268 | opp_overlap 4478529, overlap 4478520 4478529 AAAGTATTCGATTTT GCAGGAAAGCCGCGGT TTG ACCGCGGCTTTGTTGC GTTTTGGGATTCTCA TERM 4005 4478547 - 4478529 - f 93 -16 -3.73224 | opp_overlap 4478521 4478520 4478529 CGATTTTGCAGGAAA GCCGCGGT TTG ACCGCGGC TTTGTTGCGTTTTGG TERM 4006 4478529 - 4478547 + F 100 -16 -4.32607 | opp_overlap 4478529, overlap 4478521 4478520 CGATTTTGCAGGAAA GCCGCGGT TTG ACCGCGGC TTTGTTGCGTTTTGG RPE_4005 4478624 - 4479958 + | putative transposase RPE_4006 4480713 - 4480159 - | hypothetical protein RPE_4007 4486645 - 4480856 - | hypothetical protein TERM 4007 4480886 - 4480908 + g 70 -11.2 -3.53563 | overlap 4480887 AACTAGTAGCTCCAA TCGGACGGCG AAA CGCGGTCCGG TTTCCACGAAAATCT TERM 4008 4482556 - 4482539 - G 78 -14.1 -3.57144 | GTCGGCATCGTCAAA GCGGCCG CGCG CGGCCGC AACTCCGGAGGCGAT TERM 4009 4484005 - 4484015 + g 93 -6.8 -5.1356 | CTTCCGATTCGTTGC GCTG CAG CAGC TTTTTGTTGATCGGG RPE_4008 4495791 - 4486642 - | hypothetical protein TERM 4010 4489456 - 4489470 + g 73 -4.2 -4.57837 | opp_overlap 4489464, overlap 4489458 GGACTGTGCGCCAGC CGCAAG CAG CTTGAG TTTTTCCAGCAATCT TERM 4011 4489960 - 4489902 - G 74 -2.1 -4.75174 | overlap 4489905 4489906 CAGGCAAGGCAAAAA CGAGGCGCCGGTACGCGAC-CAGCGCGGG ATC CTCGAGCAGTGT-GCGGACCTGCTCCCTG ACAATGCTTTCGATG TERM 4012 4490524 - 4490508 - G 93 -10.9 -4.4267 | CGGCAAAACTCAAAA TGCCAAG AAT CTTGGCA TCCGAATCGAAGAAA TERM 4013 4490769 - 4490791 + g 87 -7.1 -5.1167 | opp_overlap 4490774, overlap 4490774 CGGTCAATGGATCAG CAGAATTGC AGGCC GCAATTTTG TTTTTGTCTTCGGTT TERM 4014 4490774 - 4490786 + g 90 -3.4 -5.40873 | opp_overlap 4490774, overlap 4490769 AATGGATCAGCAGAA TTGC AGGCC GCAA TTTTGTTTTTGTCTT TERM 4015 4493797 - 4493814 + g 82 -4.7 -4.91852 | overlap 4493792 CCAGCGGCGGCGCTG GTCGGGG AGAT CCGCGGC TTTCTTTTTCCTGGC TERM 4016 4494031 - 4494007 - G 83 -12.8 -4.06055 | opp_overlap 4494023, overlap 4494021 ATCCTGGAAACGAAA GCCGAGCGAC AGCAG GTCGCGCGGC CGGCGCACGCTGAGC RPE_4009 4496238 - 4496477 + | hypothetical protein RPE_4010 4496692 - 4496450 - | hypothetical protein RPE_4011 4496959 - 4496702 - | conjugation TrbI family protein RPE_4012 4498590 - 4497004 - | transposase IS66 TERM 4017 4498275 - 4498297 + g 72 -5.4 -4.4078 | GCAGCGGGCGTCGGG GCGGGCGTGG AGC CTGTGCACGC TTTTCCTTGGCGGCC RPE_4013 4499011 - 4498664 - | IS66 Orf2 family protein TERM 4018 4498804 - 4498788 - G 77 -7.2 -4.53303 | GACGGCCACAGAAAA CGGCCG CGCTC CAGCCG CTTCGTGAACAGACA RPE_4014 4499346 - 4499008 - | transposase IS3/IS911 family protein TERM 4019 4499133 - 4499164 + g 70 -11.6 -3.43203 | gap 1, overlap 4499097 TGGCTGGCGGCACCG GCC-CCATCCGGCGA TCG TCTTCGGATGGCGGC TTCGTATTGTCCTCG RPE_4015 4500454 - 4499351 - | conjugation TrbI family protein TERM 4020 4500051 - 4500032 - G 77 -10 -3.90291 | gap 1, opp_overlap 4500031 4500034 ATTGGTCGAAGCAAA CAGC-CGGC TGA GCCGCGCTG CTTCGATCTCCTGGC RPE_4016 4501455 - 4500451 - | conjugal transfer protein TrbG/VirB9/CagX RPE_4017 4502132 - 4501452 - | conjugal transfer protein RPE_4018 4503307 - 4502132 - | TrbL/VirB6 plasmid conjugal transfer protein TERM 4021 4502412 - 4502373 - G 73 -11.3 -3.72576 | gap 1, overlap 4502374 CTCGGCTGCATCAAA GCGGCGGCACCACGCGCC CCCCC GGCGAG-GACGCCGCCGG CGGCCCCGGCAGCCA TERM 4022 4502411 - 4502374 - G 73 -14.8 -2.83403 | gap 1, overlap 4502373 TCGGCTGCATCAAAG CGGCGGCACCACGCGCC CCCCC GGCGAG-GACGCCGCCG GCGGCCCCGGCAGCC TERM 4023 4502565 - 4502551 - G 77 -4.2 -4.72272 | overlap 4502525 TCCCCGGACCAAAAA TGCCGA GGC CCAGCA ACGACAATGCGGCGA RPE_4019 4503672 - 4503307 - | hypothetical protein RPE_4020 4504397 - 4503669 - | putative conjugal transfer protein TrbJ RPE_4021 4506835 - 4504394 - | AAA ATPase RPE_4022 4507141 - 4506860 - | type IV secretory pathway, VirB3 family protein RPE_4023 4507470 - 4507141 - | conjugal transfer protein TrbC RPE_4024 4508435 - 4507467 - | type II secretion system protein E RPE_4025 4509014 - 4508574 - | hypothetical protein RPE_4026 4511020 - 4509023 - | TRAG family protein TERM 4024 4509675 - 4509686 + g 72 -7.2 -4.26019 | AAAATGGCGTTGTTG GGCC CGTA GGCC TTTTCGATCTGATTG TERM 4025 4510209 - 4510197 - G 75 -4.7 -4.62984 | opp_overlap 4510202, overlap 4510199 GGATCAGAGAGAAAA CCCGC GAC GCCGG CGAGCGTCTTGTCGG TERM 4026 4510446 - 4510432 - G 71 -12.8 -3.25787 | overlap 4510430 GATCGAACAGCAACA CCCGGC CGT GCCGGG CCCGGTAGCCCGACG RPE_4027 4512897 - 4511146 - | hypothetical protein TERM 4027 4512725 - 4512701 - G 73 -9.1 -3.98083 | overlap 4512702 4512705 GACCGAAGCGACAAA GCCAGCGCCGC CGA GCGCCCCCGGC CGAACCGGGAGGCCG RPE_4028 4513148 - 4512894 - | hypothetical protein TERM 4028 4513025 - 4513045 + g 84 -9 -4.53303 | gap 1, opp_overlap 4513024 ACCAACCAACCACAT GCGCCCGAC GGAC GTCGG-CGC TTTTATCTCGCCATC RPE_4029 4514053 - 4513145 - | lytic transglycosylase, catalytic TERM 4029 4513285 - 4513251 - G 73 -12.9 -3.30441 | opp_overlap 4513248 4513252, overlap 4513252 GACGAGCCGTTAGAA CGCACATCGGGCGAT GACGA ATCGGCCGATGTGCT GCTTGCTAACCGTAA TERM 4030 4513252 - 4513284 + g 77 -16.4 -2.78216 | opp_overlap 4513251 4513252, overlap 4513248 ACGAGCCGTTAGAAC GCACATCGGGCGAT GACGA ATCGGCCGATGTGC TGCTTGCTAACCGTA TERM 4031 4513284 - 4513252 - G 77 -16.4 -2.5805 | opp_overlap 4513252 4513248, overlap 4513251 ACGAGCCGTTAGAAC GCACATCGGGCGAT GACGA ATCGGCCGATGTGC TGCTTGCTAACCGTA RPE_4030 4514568 - 4514053 - | conjugal transfer protein precursor RPE_4031 4515029 - 4514565 - | hypothetical protein RPE_4032 4516229 - 4515342 - | putative replication protein A RPE_4033 4516531 - 4516247 - | putative transcriptional regulator TERM 4032 4516489 - 4516472 - G 70 -2.5 -4.61231 | overlap 4516473 4516474 CGACAGGCCCAAAAA TCGCGCG GCCT CGGGCGT GCGCAGGTAGCGTGG RPE_4034 4517236 - 4516658 - | hypothetical protein RPE_4035 4517474 - 4517244 - | hypothetical protein RPE_4036 4517871 - 4517593 - | hypothetical protein RPE_4037 4518025 - 4518279 + | XRE family transcriptional regulator TERM 4033 4518412 - 4518389 - T 89 -16 -3.53224 | opp_overlap 4518380 4518376 TATCGCTGCTCGAAA CGCCCCGCTC ATTT GAGCGAGGCG TTCCGATGATCGGTT RPE_4038 4518754 - 4518431 - | hypothetical protein RPE_4039 4519974 - 4519324 - | hypothetical protein TERM 4034 4520000 - 4519983 - R 74 -10.5 -3.68351 | TCGCCATGAGGGAAA GCAGCGC TTAC GCGCCGC GCTCTCCGAATTTCC RPE_4040 4520973 - 4519990 - | hypothetical protein TERM 4035 4521098 - 4521083 - R 75 -11.8 -3.64703 | GCCTCGCGATGCAAA GGCGGG TCTT CCCGCC GGCGGAAAATAGTCG RPE_4041 4522297 - 4521266 - | hypothetical protein RPE_4042 4526673 - 4522294 - | methylase/helicase TERM 4036 4525484 - 4525508 + g 70 -9.9 -3.72695 | TCGGTGATGTTGCCG CCCTCGACCGG CTT CCAGTCGATGG TTTGGTAGGCAAGCT RPE_4043 4528950 - 4526839 - | nuclease RPE_4044 4530028 - 4529078 - | hypothetical protein TERM 4037 4529164 - 4529145 - G 72 -4.8 -4.47328 | overlap 4529146 AAGGCCAGTAGAAAA TCGGCGGC CTTC GACGCCGC ACTCGCCGCGCGCAC RPE_4045 4530380 - 4530679 + | histone family protein DNA-binding protein RPE_4046 4530797 - 4531744 + | putative aminotransferase protein TERM 4038 4534403 - 4534419 + G 70 -2.1 -4.59109 | TCGGGGGCATCGATG GTGCACG CAC CGAGGAC TTTTTGCGCGGTCTG RPE_4047 4531744 - 4535439 + | DEAD/DEAH box helicase domain-containing protein RPE_4048 4535872 - 4535486 - | nucleic acid binding, OB-fold, tRNA/helicase-type RPE_4049 4537319 - 4536306 - | hypothetical protein TERM 4039 4537288 - 4537306 + g 70 -2.4 -4.64676 | overlap 4537269 ATCGCAACTAGGTCT TCGAGG ATGTTTC CCTTGA TTTTGTTAGACATCG RPE_4050 4538358 - 4537654 - | hypothetical protein TERM 4040 4538260 - 4538280 + g 74 -5.3 -4.55383 | ACCGTCGGGCAGTAT CTCGTGGGC TTT GGCGACGAG TTCTTTTTCTAGCTT RPE_4051 4538946 - 4538455 - | hypothetical protein TERM 4041 4539162 - 4539133 - g 77 -12.9 -3.53012 | gap 1, overlap 4539151 GGGCTGCCGGCGAAA CGGCGGATCCGGAT AGA ATCCGGCT-CGCCG CGCCAAATAATGCCC RPE_4052 4539006 - 4539260 + | hypothetical protein RPE_4053 4540488 - 4539451 - | hypothetical protein RPE_4054 4541101 - 4540481 - | hypothetical protein TERM 4042 4540522 - 4540551 + g 100 -17.9 -4.08064 | overlap 4540515 TCGACGTCAGTGTCG GCCTCATCCAGGC CGGT GCCTGGTTGAGGC TTTTGCCGAGCAGTT RPE_4055 4542739 - 4541198 - | hypothetical protein TERM 4043 4541254 - 4541237 - G 77 -6.9 -4.56597 | opp_overlap 4541236 CTCGCGGGTCAAAAA GGACCGC ACGC GCGCTCC AATTTCGGGAAAGAG RPE_4056 4542885 - 4544633 + | ATP-dependent OLD family endonuclease RPE_4057 4544630 - 4546414 + | superfamily I DNA/RNA helicase-like protein RPE_4058 4546401 - 4547030 + | hypothetical protein RPE_4059 4547374 - 4547105 - | hypothetical protein TERM 4044 4547343 - 4547365 + g 73 -6.3 -4.4009 | gap 1 TTCTTCTTGTGGTCG CGCAATGGGT CGCG GCCC-TTGCG TTTTGTCACGTCGCC RPE_4060 4547817 - 4547957 + | hypothetical protein TERM 4045 4548034 - 4548045 + T 73 -3 -4.71828 | CTCAGAAGATTTCTA TCAA GTCT TTGA TTTTGTTGGTACAGT TERM 4046 4548262 - 4548232 - T 100 -14.1 -5.14965 | gap 1, opp_overlap 4548238 ACGTCTAGCAAAAAA GCAAAAGCCCGAGC CATC GCCCGGGC-TTTGC GCTGTTGAGCTGCGC TERM 4047 4548238 - 4548257 + T 70 -10.6 -3.66803 | opp_overlap 4548232 AGCAAAAAAGCAAAA GCCCGAGC CATC GCCCGGGC TTTGCGCTGTTGAGC RPE_4061 4548720 - 4548283 - | phasin RPE_4062 4549399 - 4549016 - | phasin 2 TERM 4048 4549420 - 4549436 + H 79 -9.4 -4.18494 | CCACTCCTCTCGAGT TCGGGC CGATC GCCCGA TTTTCCGTCCCCGTC TERM 4049 4551427 - 4551455 + G 81 -8.7 -4.56597 | overlap 4551428 CCAATCCATCCGCCG ATATCCCGCAGCC ATC GGCCGCGGGAGAC TTTTTGCAACCAGCA TERM 4050 4551428 - 4551454 + G 71 -12.2 -3.33744 | overlap 4551427 CAATCCATCCGCCGA TATCCCGCAGCC ATC GGCCGCGGGAGA CTTTTTGCAACCAGC TERM 4051 4552564 - 4552537 - g 71 -9 -3.77831 | overlap 4552538 CCAGGAAGACCGAAA CCGAACTGGCGC AGGC GCGCCGGCTCGC CGAGCATTCGGCCAG RPE_4063 4549719 - 4553273 + | PAS/PAC sensor signal transduction histidine kinase TERM 4052 4553996 - 4553953 - g 87 -15.2 -3.82084 | overlap 4553994 TTTGAACATCAAGAA CGACGAGGCGCACCGGCTCG CGAC CGAGCTGGCGCAACTCACCG GCGAAAGCCTGACGG RPE_4064 4553924 - 4554184 + | transcription factor RPE_4065 4554181 - 4554582 + | PilT domain-containing protein TERM 4053 4554912 - 4554892 - T 91 -18.3 -3.15544 | TTCGAGGCTCACGAA CGACCGCGC CAA GCGCGGTCG CCCGTGAGCACCTCA RPE_4066 4555473 - 4555054 - | hypothetical protein TERM 4054 4556225 - 4556235 + G 74 -2.4 -4.82901 | overlap 4556216 CGGACGCCTTCCTGG CCGC GGA GGGG TTTTTCTCGGGCCCC RPE_4067 4555702 - 4556376 + | hypothetical protein TERM 4055 4556502 - 4556522 + F 72 -13.9 -2.71364 | TTCGAGGCTCGCAGC CGACCGCGC CAA GCGCGGCCG TCGTTGAGCGCCTAA TERM 4056 4557124 - 4557142 + G 70 -11 -3.59979 | overlap 4557125 GGTGGTGGTGCGCTA TGTCTCGC CGG GCGAGACG TTTGGCGTGGCCACC RPE_4068 4556900 - 4557622 + | Crp/FNR family transcriptional regulator TERM 4057 4559068 - 4559029 - g 73 -14.2 -3.11634 | gap 1 GCCGACACCACGCAA CGGCTGTCCAGCGTCGTCG CCG CGACGTCGCAGGAC-GCCT CGACCAATGTGCAGT RPE_4069 4558003 - 4559742 + | methyl-accepting chemotaxis sensory transducer RPE_4070 4560053 - 4559796 - | hypothetical protein TERM 4058 4559939 - 4559892 - G 79 -5 -4.72986 | gap 3, overlap 4559897 GAGCGCGACCAAAAA CACATCG-CGATCGACGTCGTGC TCGCG GCAGG-CGTC-ATCGACGGTGTG AAAGGTCGCGATCGG RPE_4071 4560262 - 4561362 + | nitrite reductase, copper-containing TERM 4059 4561888 - 4561943 + G 73 -13.1 -3.34088 | gap 2, opp_overlap 4561880, overlap 4561891 4561897 CTATAAACTCTGCGT CGAGGAGGGCGGCTGCGCGGCGGCCGC CACC GCG-CCGGCGCGCGATCGCCCCGC-CG TTCGTATCTCCTGGT TERM 4060 4562380 - 4562360 - g 78 -13.9 -3.60098 | ATCCGCGACGCCAAA GCCGGTGGC TGC GCCGCCGGC GTGCCGCCCGCCAAT RPE_4072 4561613 - 4562473 + | hypothetical protein TERM 4061 4563222 - 4563177 - g 73 -13.2 -3.29461 | gap 2 CAATCTGGCGCAGAA GCCGTCGGGCGGCGATCGCGAG ACCG CGCGCGA-CGTCGCC-GCCGGC AAATGCGATCTCGGC RPE_4073 4562590 - 4563612 + | extracellular solute-binding protein TERM 4062 4564292 - 4564346 + G 85 -17.6 -2.64616 | GGGCGCTGGACCATC GCGCGGCGCGTGCTGCTGCCGACGGC GCG GCCGGCGCTGGCGGTCGGCGTCGCGC TGGTGTCGCTGGAAA TERM 4063 4564748 - 4564784 + G 77 -14.4 -3.45023 | gap 1 CATTCGGTGTCGCTG GCCGCCACCGCCACCGC ACTC GCGCTGGCGCTGG-GGC TTATCGTGATCCTGG RPE_4074 4563668 - 4565383 + | binding-protein-dependent transport systems inner membrane component TERM 4064 4566178 - 4566201 + G 73 -3.8 -4.60487 | gap 1 CCGTTTCGGGCCCTC GCCTTGC-CGA TGG TCGCGGAGGGC TTTTTGGCGCTGCTG TERM 4065 4566327 - 4566339 + G 71 -9.1 -3.85817 | CAATCTCATCAGCGA CAGCC AGC GGCTG TTTCTCGGGCAGAAT TERM 4066 4567500 - 4567444 - g 81 -10.9 -4.08546 | gap 3, overlap 4567440 ATCACCAACCAGAAA CTCGCCGAAGCGAAGCTCGCCGGGCTCA ATCG CGAGCTCGA-G-GCC-CGCGTCGGCGAG CGGACCGCGGAGTTG RPE_4075 4565647 - 4568685 + | multi-sensor hybrid histidine kinase RPE_4076 4568890 - 4569507 + | hypothetical protein TERM 4067 4569771 - 4569748 - T 84 -16 -3.06183 | gap 1, overlap 4569762 GTCATTGCGAGCCAA CGGGTCGGCGC AAA GCGCCG-CCCG ATGACAGGCTCCGCG TERM 4068 4569793 - 4569813 + T 71 -11.2 -3.45134 | opp_overlap 4569793 GGCTCCGCGAAGTAA TCCAGTGC GCCGA GCACTGGA TTCTGGATTGCTTCG RPE_4077 4570607 - 4569957 - | 3-oxoacid CoA-transferase subunit B RPE_4078 4571344 - 4570607 - | 3-oxoacid CoA-transferase subunit A TERM 4069 4571667 - 4571682 + H 84 -8.2 -4.49756 | opp_overlap 4571652, overlap 4571657 GTTGTGCCGCCCCAA GCGGCC CGGC GGCTGC TTTTCCTGTTTCAAC TERM 4070 4572657 - 4572626 - g 77 -10.8 -3.83568 | overlap 4572656 CCAGATCGACAAGAA CGTCGCCGAAGGCG TCAT CACCTACAGCAACG GCGGCCGGCAGTCGC TERM 4071 4572693 - 4572656 - g 78 -14.8 -3.28416 | gap 1, overlap 4572626 CATCACCTACAGCAA CGGCGGCCGGCAGTCGC TGCAG GCGAC-GCTGGCGGCCG GCGCGCTCGACTTGA TERM 4072 4573639 - 4573599 - g 74 -12.3 -3.53012 | CTCGGCGGCGCCAAA GCCGCGCCAGAGGCCGCCG ATG CCCCGGCCGCCGACGCGCC GGCGGCCAAGCCGAA RPE_4079 4571721 - 4573658 + | hypothetical protein RPE_4080 4573694 - 4574062 + | hypothetical protein RPE_4081 4574907 - 4574089 - | binding-protein-dependent transport systems inner membrane component RPE_4082 4575821 - 4574907 - | binding-protein-dependent transport systems inner membrane component RPE_4083 4576966 - 4575818 - | spermidine/putrescine ABC transporter ATP-binding subunit TERM 4073 4576237 - 4576204 - G 78 -6 -4.57569 | gap 1, overlap 4576223 TGACGCCTTCAAAAA CGTTAACGTCGCCGA CGAAC TCGGCGAC-CCAGCG CGACGCCGGCGCCTC TERM 4074 4576507 - 4576457 - G 78 -15.3 -3.21099 | gap 1, opp_overlap 4576506 TTCGTCGAGCAGCAA CAGCCGCGGC-CGCCGCGCCAGCG CCCG CGCCAGCGCCACGCGCTGCTGCTG GCCGCCGGAGAGCTG TERM 4075 4577082 - 4577062 - R 71 -8.1 -3.86524 | overlap 4577063 AGATTGTCGGATAAA GCCTCGGCG ACG CGCCGCGGG ACGTCTCGGGATACG RPE_4084 4579782 - 4577098 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4076 4580169 - 4580194 + G 70 -13.3 -3.02096 | gap 1 TAGCCTGATGGCGCG GCTGTGCGTCGG CGG CCGGCGC-CAGC TCTATGATTACTGCC TERM 4077 4580682 - 4580697 + G 82 -11.8 -4.10161 | overlap 4580694 CAACTACTTCAGCTG CGGCGC GCGC GCGCCG TTTTCGCGGCTGATC RPE_4085 4579978 - 4581084 + | FAD dependent oxidoreductase RPE_4086 4581551 - 4581366 - | hypothetical protein RPE_4087 4581889 - 4582098 + | hypothetical protein RPE_4088 4582804 - 4582103 - | diguanylate cyclase RPE_4089 4582925 - 4583413 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 4078 4583935 - 4583903 - g 84 -5.4 -4.9725 | gap 1, overlap 4583904 AGGGCCAGACAAAAA TCCAGCCCGGCGACG ATCT CGACGC-GGTCTGGG CGGATCTCGGCACCC RPE_4090 4583410 - 4584522 + | phosphoribosylaminoimidazole carboxylase ATPase subunit rpsU 4584701 - 4585000 + | 30S ribosomal protein S21 TERM 4079 4585025 - 4585057 + T 100 -17.8 -3.68351 | gap 1, overlap 4585029 GTCAAAGTTCTGTAT CGATCGACGCGGGCC CTTC GGCCCGCGTTG-TCG TTTGGCTGATGCGCC TERM 4080 4585029 - 4585054 + T 90 -18.3 -2.95116 | overlap 4585025 AAGTTCTGTATCGAT CGACGCGGGCC CTTC GGCCCGCGTTG TCGTTTGGCTGATGC RPE_4092 4585479 - 4585168 - | type IV pilus assembly PilZ TERM 4081 4585538 - 4585495 - R 70 -10.2 -3.54424 | gap 1, overlap 4585499 CCTCACCCCCCGAAA GCAATCCGCCTCGC-ACCGGC TCA GCCGATCGCGTGGCAGACCTC ACCACCGAGGCGACG TERM 4082 4585534 - 4585499 - R 79 -14 -3.51411 | gap 1, overlap 4585495 ACCCCCCGAAAGCAA TCCGCCTCGC-ACCGGC TCA GCCGATCGCGTGGCAGA CCTCACCACCGAGGC RPE_4093 4586651 - 4585575 - | hypothetical protein TERM 4083 4586682 - 4586693 + r 71 -5.8 -4.2803 | overlap 4586671 TCTCGCGTCGCAACG GCGA TAGC TCGC TTTTCGATTCACATA TERM 4084 4586895 - 4586911 + r 100 -15.1 -4.59109 | opp_overlap 4586886 4586884, overlap 4586899 GAAACAGACCGGTTT GCCGGCC GCC GGCCGGC TTTTTGGAGGGTATC TERM 4085 4587110 - 4587136 + r 71 -11.4 -3.53012 | overlap 4587111 GGGTCGGACGATGGG AAGCTCGGCGGC CGT GCCGCCGGGCCG TTTCAGCGCGGAACC TERM 4086 4587111 - 4587135 + r 75 -14.9 -2.71712 | overlap 4587110 GGTCGGACGATGGGA AGCTCGGCGGC CGT GCCGCCGGGCC GTTTCAGCGCGGAAC RPE_4094 4587987 - 4587139 - | hypothetical protein TERM 4087 4587489 - 4587434 - G 70 -10.6 -3.49475 | gap 5 GCGACCGCGACAGAA CCGGCAGCCGACAGCG-GCGC--GACGTG CGC CACATCCTGCGCCCGCGG-CGGCT-CCGG CAGACGCGGCGTGGC TERM 4088 4587644 - 4587673 + g 81 -12.8 -3.82824 | gap 1 ACCGCGGCCACGGTG GCCGG-GGCGACG ACGGG CGCCGCCGCCGGC TTCTTCTCGGTGATC RPE_4095 4589212 - 4588163 - | sodium/calcium exchanger membrane region TERM 4089 4588426 - 4588452 + g 70 -10.7 -3.53012 | TCTGCAGATCGTTGC GCCGCGCCGCG CCGAT CGCGGCGATGC TTTCCGGCAGCAGGA TERM 4090 4588581 - 4588547 - G 81 -10.6 -4.10161 | GACCACGTGGGAAAA CGTCTCCGCCAGCAGC ACC ACCGCCAGCAGTGACG TCAGCAGCAGCGCCG TERM 4091 4589368 - 4589399 + r 100 -20.8 -4.8048 | opp_overlap 4589368 AGCGCGCAGCAAAAA GGGCGCGGCGTGCC CTGC GGCTCGCTGCGCCC TTTTTCGTCTCGGCC TERM 4092 4589399 - 4589368 - R 100 -18.6 -4.7254 | opp_overlap 4589368 AGCGCGCAGCAAAAA GGGCGCGGCGTGCC CTGC GGCTCGCTGCGCCC TTTTTCGTCTCGGCC TERM 4093 4589410 - 4589441 + r 73 -13 -3.1552 | overlap 4589409 CGCCCTTTTTCGTCT CGGCCGGCATCG GAATCAAG CGATGCCGGCCC TATTCGTAAATCAAA RPE_4096 4590887 - 4589487 - | NAD(P) transhydrogenase, beta subunit TERM 4094 4590576 - 4590546 - G 86 -18.2 -3.12351 | overlap 4590564 GGTGCCGATATCGAA CGCCGCCGGCGCGT AGA ACGCGCCCGCCGCG ACCAGCACCGCCGCC RPE_4097 4591218 - 4590901 - | nicotinamide nucleotide transhydrogenase, subunit alpha2 RPE_4098 4592360 - 4591230 - | NAD(P)(+) transhydrogenase (AB-specific) TERM 4095 4592436 - 4592408 - R 100 -16.7 -4.19817 | opp_overlap 4592411, overlap 4592411 GCGAGCGAGCCAAAA GAAGAGCGCCGCC TGT AGCGGCGCGCTTC GGTACAAATCAAGTC TERM 4096 4592433 - 4592411 - R 89 -12.6 -4.22214 | opp_overlap 4592411, overlap 4592408 AGCGAGCCAAAAGAA GAGCGCCGCC TGT AGCGGCGCGC TTCGGTACAAATCAA RPE_4099 4592597 - 4592445 - | aa3 type cytochrome c oxidase subunit IV RPE_4100 4593239 - 4592856 - | death-on-curing family protein RPE_4101 4593516 - 4593262 - | transcriptional regulator/antitoxin, MazE TERM 4097 4593609 - 4593561 - R 100 -17.1 -3.5393 | opp_overlap 4593563 4593564, overlap 4593562 ACCATCTTGCTCAAA CCTTGTTGTACATTACGTATAAC ATC GTTATACGTAATGTACAACATAT TTTTGGGCCCCTACC TERM 4098 4593608 - 4593562 - R 91 -20.6 -2.72144 | opp_overlap 4593563 4593564, overlap 4593561 CCATCTTGCTCAAAC CTTGTTGTACATTACGTATAAC ATC GTTATACGTAATGTACAACATA TTTTTGGGCCCCTAC TERM 4099 4593563 - 4593608 + r 100 -20.3 -4.57569 | gap 1, opp_overlap 4593562 4593561, overlap 4593564 CATCTTGCTCAAACC T-TGTTGTACATTACGTATAAC ATC GTTATACGTAATGTACAACATA TTTTTGGGCCCCTAC TERM 4100 4593564 - 4593606 + r 100 -25.4 -3.90316 | opp_overlap 4593562 4593561, overlap 4593563 ATCTTGCTCAAACCT TGTTGTACATTACGTATAAC ATC GTTATACGTAATGTACAACA TATTTTTGGGCCCCT RPE_4102 4595527 - 4593620 - | pepF/M3 family oligoendopeptidase TERM 4101 4594082 - 4594096 + g 72 -11.4 -3.61328 | GACCTTGCCGGCGAG CAGCGC TTG GCGCTG TTTCGGGCTCTTGGT TERM 4102 4596168 - 4596147 - g 91 -13.7 -4.26076 | gap 1 GGAGGGTGACGAAAA CGGCGCCGCC AAC GGC-GCGCCG CCGCGCAAGACGCTG RPE_4103 4595785 - 4596474 + | integral membrane protein TerC RPE_4104 4596537 - 4598024 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 4103 4598352 - 4598370 + G 74 -10.2 -3.88787 | ATTCGACCGCGTTCT GATCGCCG TTG CGGCGACC TTTGTCACGCTGTCC RPE_4105 4598308 - 4600425 + | peptidoglycan binding domain-containing protein TERM 4104 4600489 - 4600518 + F 71 -12.9 -3.07233 | opp_overlap 4600480 4600479 4600492, overlap 4600480 AAATAGCGAGCGATA TCAGTGGCCCTGA CCTG TCAGGACCGCTGA TATTAACCATTGTCC TERM 4105 4601190 - 4601228 + G 100 -14.5 -4.83615 | gap 1, opp_overlap 4601189 4601190, overlap 4601191 4601193 GCCGCTGGAGCAAAT TCG-CGCCGCCGGCCTGC GATT GCAGCGCGGCGGCGTCGG TTTTTATCCGACCTC TERM 4106 4601191 - 4601227 + G 83 -15.8 -3.49687 | gap 1, opp_overlap 4601190 4601189, overlap 4601190 4601193 CCGCTGGAGCAAATT CG-CGCCGCCGGCCTGC GATT GCAGCGCGGCGGCGTCG GTTTTTATCCGACCT TERM 4107 4601193 - 4601224 + G 82 -17.2 -2.88667 | opp_overlap 4601190 4601189, overlap 4601191 4601190 GCTGGAGCAAATTCG CGCCGCCGGCCTGC GATT GCAGCGCGGCGGCG TCGGTTTTTATCCGA RPE_4106 4600717 - 4602336 + | hypothetical protein TERM 4108 4602324 - 4602346 + T 90 -13.4 -4.03234 | overlap 4602339 4602340 GCCGTTCACGACCGC GTCGTTGCGC TGA GCGCGACGGC TTTCTCTCCGAAGCC TERM 4109 4602497 - 4602467 - T 77 -14.8 -2.96695 | gap 1, overlap 4602464 GTGCCCACTAAAGGA CG-CATGGCCGGG ACGGAG CCCGGCCATGACG CATCAAACCATTGGT RPE_4107 4602799 - 4602530 - | hypothetical protein RPE_4108 4603313 - 4603014 - | hypothetical protein TERM 4110 4603586 - 4603632 + G 73 -6.3 -4.39166 | gap 1, overlap 4603566 4603585 4603572 4603587 GGCCTGCTGCCGGCG CTGGCCTTGGCCGCTTCGTGCC TGTG GGC-CAGCGCGGCCGCGGCCGA TTTTCGTCTCTGCAA TERM 4111 4603990 - 4604029 + G 84 -17.1 -3.09516 | gap 1, opp_overlap 4603979 4603978 GAATCCGCAGCGTGT GCCGGGCATGCCCGGCGC GCCGA GCGGCGGAC-TGCCCGGC TTACCTAATCAGCAG RPE_4109 4603517 - 4604107 + | hypothetical protein TERM 4112 4604900 - 4604882 - g 70 -3.7 -4.55295 | overlap 4604883 GCCTGCAGAAACAAA TGACGCG GATGG CGCGCCG CGCCGGCAAGCCGGT TERM 4113 4605479 - 4605506 + G 75 -7 -4.3739 | gap 1, overlap 4605480 TGCCGCTCGGCACCC CCGGTGCG-ACCA ACA TGGTTCGCATCGC TTTTGTCGGCCCCTC RPE_4110 4604104 - 4605537 + | pyruvate kinase TERM 4114 4605573 - 4605547 - T 95 -21 -3.36648 | opp_overlap 4605547 4605549 GAATAGATGCGACAA GAGGCGGCTTGA AGC TCAAGCCGCCTC TTCAATCCCGATCAC TERM 4115 4605547 - 4605573 + T 93 -21 -3.06183 | opp_overlap 4605547, overlap 4605549 GAATAGATGCGACAA GAGGCGGCTTGA AGC TCAAGCCGCCTC TTCAATCCCGATCAC TERM 4116 4605549 - 4605571 + T 90 -17.8 -3.08996 | opp_overlap 4605547, overlap 4605547 ATAGATGCGACAAGA GGCGGCTTGA AGC TCAAGCCGCC TCTTCAATCCCGATC RPE_4111 4605999 - 4605562 - | hypothetical protein RPE_4112 4606462 - 4606034 - | OsmC-like protein RPE_4113 4607472 - 4606516 - | alpha/beta hydrolase fold TERM 4117 4606903 - 4606876 - G 78 -9.8 -4.07568 | gap 1, overlap 4606851 4606850 CGGCTGCGGCGAAAA CACCGCGCGCGCC GCC GGCG-GCGTGATG GCAAGGCCCAGCGGC RPE_4114 4608211 - 4607546 - | TPR repeat-containing protein TERM 4118 4608322 - 4608297 - R 76 -8.1 -4.22041 | overlap 4608298 AAATCGGAACAGAAA CGCCGCGCGCA AAAC CGGGCGCGGCC GCCATTCAACCCTGG TERM 4119 4608321 - 4608298 - R 70 -11.6 -3.1214 | overlap 4608297 AATCGGAACAGAAAC GCCGCGCGCA AAAC CGGGCGCGGC CGCCATTCAACCCTG rpmJ 4608453 - 4608328 - | 50S ribosomal protein L36 RPE_4116 4608774 - 4609313 + | hypothetical protein RPE_4117 4610319 - 4609354 - | hypothetical protein RPE_4118 4610794 - 4610348 - | dehydratase RPE_4119 4611331 - 4610861 - | dehydratase TERM 4120 4611349 - 4611363 + H 78 -10 -4.00476 | ATTTCTCCTACTTTA GTTCGC TGA GCGAAC TTTCTAATCGATTTA RPE_4120 4611440 - 4612210 + | IclR family transcriptional regulator RPE_4121 4612295 - 4613170 + | amidohydrolase 2 RPE_4122 4613174 - 4613647 + | YbaK/prolyl-tRNA synthetase associated region RPE_4123 4613943 - 4613695 - | hypothetical protein RPE_4124 4614168 - 4613956 - | hypothetical protein RPE_4125 4614366 - 4615751 + | polysaccharide biosynthesis protein RPE_4126 4617044 - 4615770 - | acyl-CoA dehydrogenase domain-containing protein TERM 4121 4616251 - 4616239 - G 72 -5.5 -4.42386 | overlap 4616241 TTCTCATGCACAAAA CACTG CGC CAGCG ACAGCCCGCGGCCGA RPE_4127 4617248 - 4618027 + | enoyl-CoA hydratase TERM 4122 4618063 - 4618081 + T 77 -14.6 -2.90492 | opp_overlap 4618072, overlap 4618058 4618053 CGCCGCGGCAACGCG CCGACACG AGC CGTGTCGG TCTGGTCGTTGTTTC RPE_4128 4618603 - 4618142 - | ribonuclease H TERM 4123 4618321 - 4618334 + g 79 -3.1 -5.06414 | gap 1 CCGGCTTCTTGTCCG CGGTCT TCC AG-CCG TTTTTCTTCCAGCCG RPE_4129 4619580 - 4618600 - | homoserine kinase TERM 4124 4618774 - 4618756 - G 100 -13.8 -4.72272 | overlap 4618741 GCGCGTCAGCAAAAA GCGCAGCG CGG CGCCGCGC GCCAATAGCGGCAGC TERM 4125 4619315 - 4619326 + g 77 -3.6 -4.84359 | overlap 4619286 AGCGTCCCGCAGATT TCGC CGTC GCGG TTTTTCTCCGGCTGC RPE_4130 4620548 - 4619586 - | hydroxymethylbutenyl pyrophosphate reductase RPE_4131 4620838 - 4621572 + | hypothetical protein RPE_4133 4622181 - 4621867 - | hypothetical protein TERM 4126 4621999 - 4621985 - G 79 -2.1 -5.07523 | gap 1, opp_overlap 4621991 GACAGACAAACAAAA CTGTCG CTGA CG-CAG GCGCGCGCCCGCTTG TERM 4127 4622381 - 4622400 + H 74 -4.9 -4.56597 | TCCGCGGAACGCCTT TCGACGC TCCACC GCGGCGA TTTTTCGCCCCAGGG RPE_4134 4624203 - 4624619 + | phosphate-starvation-inducible E RPE_4135 4625028 - 4625333 + | hypothetical protein RPE_4136 4625479 - 4625763 + | prevent-host-death family protein RPE_4137 4625760 - 4626203 + | PilT domain-containing protein RPE_4138 4626288 - 4626629 + | hypothetical protein TERM 4128 4626872 - 4626817 - g 70 -11 -3.59698 | gap 1 CCAGCCCAGACAGAA GTTCGACGCCGATTACG-TCGCCACGC TGC GCGAGGTGCTCGATATCGCCGTCGAAC AGATCGCGGTGGAGC RPE_4139 4626797 - 4627012 + | hypothetical protein TERM 4129 4627054 - 4627034 - T 71 -13.9 -2.59797 | opp_overlap 4627048, overlap 4627033 4627029 TGCCGATAAAGACAT GCGTCGCCG CGA CGGCGGCGC GCTCCCTCGCCCCGC TERM 4130 4627246 - 4627286 + T 87 -17.6 -2.87132 | gap 1 CACTTTCGATCGCCA TTCCTGG-GCGCACGCAGC GTGA GCGGCGTGCGCGCCCGGAA TCTATAACCACCGCA RPE_4140 4628920 - 4627373 - | hypothetical protein TERM 4131 4627661 - 4627630 - G 76 -8.6 -4.26903 | gap 1 TCGACTTCATCAAAA TGCCGGGGACGTTGG AGA CCC-CGCCGCCGGCA AAATCGGCCGGCAGC TERM 4132 4628072 - 4628042 - G 73 -12.4 -3.41222 | overlap 4628040 4628062 GCGCAAGCTGAAATA CAGCCCCGGCCCCC ACA GCAGGCCGGCGCCG ACCAGCATCAGCACC TERM 4133 4628493 - 4628537 + g 73 -6.2 -4.41241 | gap 2, overlap 4628478 4628480 TGCGGCTGATCCTCG CCGG-C-GCCACGCTCGGGGCG CGG CGGCGCGGGCTCGGCCGGCCGG TTTTCTGAAGATTTG RPE_4141 4630362 - 4629070 - | adenylosuccinate synthetase TERM 4134 4630242 - 4630285 + g 74 -14.6 -3.01712 | gap 1 TGATCACCAGCGTGT GGCCGGCATTGTGGCCGCCCT GGA AGCGCA-CCACGATGTCGGCC TGTTCCGACAACCAG TERM 4135 4630413 - 4630425 + H 70 -10.5 -3.62096 | opp_overlap 4630411 4630412 GATCGGGACGAAAGC GCGCG CTT CGCGC TTTCGGATCATGCCC RPE_4142 4630756 - 4631067 + | hypothetical protein RPE_4143 4631069 - 4631473 + | XRE family transcriptional regulator RPE_4144 4632687 - 4631563 - | NapC/NirT cytochrome c domain-containing protein TERM 4136 4632340 - 4632360 + g 71 -3.2 -4.59109 | overlap 4632333 TTCGTGGCGCGCCAG TTCGTGGC GCTTG GCTTCGAA TTTTTCCCGGGTGTC TERM 4137 4632794 - 4632765 - R 100 -17.9 -3.93038 | opp_overlap 4632758 4632755, overlap 4632749 4632747 CATCGCAACAGCAAA GGGGCCAGACGGT TGCG ACCGTCCGACCCC CCTGACGTTGTTTCA RPE_4145 4633837 - 4632842 - | cytochrome-c peroxidase RPE_4146 4636823 - 4634148 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) RPE_4147 4638611 - 4637010 - | beta-lactamase domain-containing protein TERM 4138 4637350 - 4637325 - G 72 -4.6 -4.56597 | gap 1, overlap 4637327 4637328 GCCGTGGGTCAAAAA CACGCCG-CGG TCGAT CGGCCGGCGCG CGGCGATCCAGCGCG TERM 4139 4637355 - 4637327 - G 77 -10.2 -3.90048 | gap 1, overlap 4637325 4637328 CGTGGGTCAAAAACA CGCCGCG-GTCGA TCGG CCGGCGCGCGGCG ATCCAGCGCGCCAGC RPE_4148 4639516 - 4638608 - | phosphoribosylpyrophosphate synthetase TERM 4140 4639393 - 4639353 - G 73 -13.9 -3.08464 | overlap 4639356 GGACGATCCAGCGAA GCATGGATCAGCGTGGTCG GCG CGACCTCGCCGACCCGCAC GCGCAATTCGCCGTC RPE_4149 4641054 - 4639513 - | thymidine phosphorylase RPE_4150 4641295 - 4641828 + | hypothetical protein RPE_4151 4641962 - 4642783 + | aldo/keto reductase TERM 4141 4642806 - 4642837 + F 84 -16.7 -3.03441 | gap 1, opp_overlap 4642794, overlap 4642800 CCACTCGCTCGCGTC CGTC-ATGCCCGCG CTTGT CGCGGGCATCGACG TCTTGAGAGCTGGTG TERM 4142 4642896 - 4642865 - f 73 -10.9 -3.55084 | gap 1, overlap 4642863 GTGCAAGATCAAAGA CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG AACTGATAGGTTAGT TERM 4143 4643183 - 4643158 - g 74 -7.5 -4.2704 | gap 1 GTCAGCATGAAGAAA CTCGCGCACGCC TTC GGCG-GCAAGAG CGCGAAGATGATGAA RPE_4152 4642936 - 4643412 + | ybaK/ebsC protein TERM 4144 4643643 - 4643624 - f 76 -7.8 -4.28254 | gap 1, overlap 4643626 GTGCAACACTCAAAA CAGCCAGCG CGA CGCCGGC-G CCGGCCCCACCGTGG TERM 4145 4643642 - 4643626 - f 76 -11.5 -3.741 | overlap 4643624 GCAACACTCAAAACA GCCAGCG CGA CGCCGGC GCCGGCCCCACCGTG TERM 4146 4643869 - 4643905 + F 83 -14.4 -3.50853 | gap 1, opp_overlap 4643854, overlap 4643870 CGGCTGCTGGACTGC CGCCCCGGCGCTGCATG CACG CATGC-GCGCCGCGGCA TTGTGATTGCCGCGA TERM 4147 4643870 - 4643904 + F 86 -17.9 -2.70298 | gap 1, overlap 4643869 GGCTGCTGGACTGCC GCCCCGGCGCTGCATG CACG CATGC-GCGCCGCGGC ATTGTGATTGCCGCG TERM 4148 4644770 - 4644801 + G 75 -11.5 -3.71487 | opp_overlap 4644763 4644762, overlap 4644771 GCTACAACCGCGGCG TGGCGCTGGTCGG CGCCAA CCGCTCAGCGCCG TTCTTCCATCTGATC RPE_4153 4644013 - 4644945 + | hypothetical protein RPE_4154 4646729 - 4645050 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 4149 4647116 - 4647071 - R 72 -11.9 -3.31461 | opp_overlap 4647070 4647069 GAGTCACTGCGAGAA CCTG-ACAGCCGAGCGCGCCG TCTACG CCGCGCGCACGG-TGTGCAGG AATTTGCCGACCTCG RPE_4155 4649188 - 4647092 - | methyl-accepting chemotaxis sensory transducer TERM 4150 4648233 - 4648288 + g 70 -10.8 -3.5764 | overlap 4648223 AGCGCCGAGGCGCTG CGCGCCGCGTCGTTCGCCGCCTCGGC ATCG GCCGCGGTGCCGACTGCTTCGGCGAG TTTGAGAATGGCGTT TERM 4151 4648615 - 4648651 + g 70 -10.8 -3.53012 | gap 2, overlap 4648615 CGTTTTCCGCCATGT C-GGCGGCG-AGATGCCG CAA CGGCAGCAGCGCCGCCAG TTTGGCCGAGGGCGG TERM 4152 4648918 - 4648938 + g 71 -14.7 -2.62396 | overlap 4648898 ACTGAAATGCCTCGT CGGCGTTGC TGC GCAGCGCCG TGATCTCGGCCAGTC RPE_4156 4650522 - 4649539 - | rubrerythrin TERM 4153 4651912 - 4651896 - g 73 -12.3 -3.37796 | overlap 4651905 CTTCACCATCGAGAA CGTCGAC AAG GTCGACG ACCGCCACATCATCG RPE_4157 4650679 - 4652034 + | hypothetical protein TERM 4154 4652097 - 4652041 - T 86 -11.6 -4.16033 | opp_overlap 4652050, overlap 4652044 GCGAAATAACAATAA GACGAGGCATTCCGGG-GCGCTCGCAGC GAA GCTGCGGGCGAACCCGAAATCTCTC-TC GGTGCTACAATCTCG TERM 4155 4652095 - 4652044 - T 75 -14.4 -2.78006 | gap 1, opp_overlap 4652050, overlap 4652041 AAATAACAATAAGAC GAGGCATTCCGGG-GCGCTCGCAGC GAA GCTGCGGGCGAACCCGAAATCTCTC TCGGTGCTACAATCT TERM 4156 4652050 - 4652089 + T 78 -15 -3.01416 | gap 1, opp_overlap 4652044 4652041 CAATAAGACGAGGCA TTCCGGG-GCGCTCGCAGC GAA GCTGCGGGCGAACCCGAAA TCTCTCTCGGTGCTA TERM 4157 4652160 - 4652108 - T 82 -14.8 -3.28712 | gap 1, opp_overlap 4652109 4652110, overlap 4652109 CTCTCGGTGCTACAA TCTCGAGATTCAGGGGTCGCGCCGC TGAC GCGGCGCG-CCCCGGAATGACGAAT TTGGGAGAGCGACCT TERM 4158 4652159 - 4652109 - T 86 -18.3 -2.57132 | gap 1, opp_overlap 4652109 4652110, overlap 4652108 TCTCGGTGCTACAAT CTCGAGATTCAGGGGTCGCGCCGC TGAC GCGGCGCG-CCCCGGAATGACGAA TTTGGGAGAGCGACC TERM 4159 4652109 - 4652159 + T 89 -16.1 -3.53012 | gap 1, opp_overlap 4652109 4652108, overlap 4652110 TCTCGGTGCTACAAT CTCGAGATTCAGGGGTCGCGCCGC TGAC GCGGCGCG-CCCCGGAATGACGAA TTTGGGAGAGCGACC TERM 4160 4652110 - 4652158 + T 90 -19.6 -2.71712 | gap 1, opp_overlap 4652109 4652108, overlap 4652109 CTCGGTGCTACAATC TCGAGATTCAGGGGTCGCGCCGC TGAC GCGGCGCG-CCCCGGAATGACGA ATTTGGGAGAGCGAC RPE_4158 4653889 - 4652174 - | methyl-accepting chemotaxis sensory transducer TERM 4161 4654028 - 4654001 - R 100 -22.8 -4.0616 | CATCTCAACGAGAAA GCCCCGGAAGCC CAGT GGCTTCCGGGGC GCGGAGCGCGTCGCA RPE_4159 4655739 - 4654054 - | methyl-accepting chemotaxis sensory transducer TERM 4162 4654471 - 4654516 + g 70 -10.9 -3.51232 | opp_overlap 4654463 4654461 4654460, overlap 4654467 AAAACCACGACCGGA TTCGCCGGCGCGCGCCGCCTC AATG GTGGCGTTGAGCGCCAGCAAA TTGGTTTGCGAGGCG TERM 4163 4655908 - 4655936 + r 74 -13.1 -3.30619 | opp_overlap 4655910, overlap 4655910 GCCGCTACCAACAAA AATCCCTCCCCCG ATG CGGGAGAGGGATA TTGTAGCCGATAATT TERM 4164 4655934 - 4655910 - R 100 -17.9 -5.1356 | opp_overlap 4655908 4655910 CGCTACCAACAAAAA TCCCTCCCCCG ATG CGGGAGAGGGA TATTGTAGCCGATAA TERM 4165 4655910 - 4655934 + r 83 -15.7 -3.21924 | opp_overlap 4655910, overlap 4655908 CGCTACCAACAAAAA TCCCTCCCCCG ATG CGGGAGAGGGA TATTGTAGCCGATAA RPE_4160 4657569 - 4655977 - | D-3-phosphoglycerate dehydrogenase RPE_4161 4658944 - 4657772 - | phosphoserine aminotransferase TERM 4166 4659247 - 4659283 + r 91 -17.4 -3.39449 | gap 1, opp_overlap 4659248, overlap 4659248 TTTCATGGCCGACAC ATGCGACGAGCGGCGGT GGGG ACCGCCGCTCGT-GCAA TTACTGTTAGTCGGA TERM 4167 4659248 - 4659282 + r 91 -20.9 -2.63348 | gap 1, opp_overlap 4659248, overlap 4659247 TTCATGGCCGACACA TGCGACGAGCGGCGGT GGGG ACCGCCGCTCGT-GCA ATTACTGTTAGTCGG TERM 4168 4659282 - 4659248 - R 93 -20.9 -2.87931 | gap 1, opp_overlap 4659248 4659247 TTCATGGCCGACACA TGCGACGAGCGGCGGT GGGG ACCGCCGCTCGT-GCA ATTACTGTTAGTCGG RPE_4162 4659584 - 4659339 - | hypothetical protein RPE_4163 4660198 - 4659725 - | GCN5-related N-acetyltransferase TERM 4169 4659784 - 4659801 + g 74 -10.5 -3.76224 | opp_overlap 4659769 4659766 4659782 4659783 GCCGCTTGTAGAAGC GCTGCGC GTCG GCGCGGC TTTCGTGGGTGAACA RPE_4164 4660802 - 4660215 - | glutathione S-transferase TERM 4170 4660416 - 4660368 - G 73 -6.1 -4.30719 | gap 4, opp_overlap 4660395 4660396, overlap 4660352 4660369 4660370 CTCGCCGACAAGAAA CGGCGTGAC-CGCCAGCTGCAGCTG CAT CCGCTGCAGC-GCCGCGT-A-GCCG CGCTGCACCAATTTC TERM 4171 4660639 - 4660662 + g 72 -4.5 -4.56775 | gap 1, overlap 4660640 CCGTCGTCGAATTCG ACCA-CCGGC ACCTG GCCGGCTGGA TTTTTGCCGAGAAAT RPE_4165 4661654 - 4660863 - | hypothetical protein TERM 4172 4661150 - 4661139 - G 77 -5.8 -4.65838 | overlap 4661140 CATATAGGGCAAAAA GCCT TTCC AGGC ATAGCCGGCACGGAG TERM 4173 4661608 - 4661559 - G 83 -14.1 -3.78775 | overlap 4661577 CCGGGGACCATCAAA CAGCGCGCCGCGCAGAAACGGCA TGTC CGCCGCTTCGGCGCCCTGCGCCG CCAGTCCCAGCCCCA TERM 4174 4661768 - 4661746 - R 100 -17 -5.07652 | opp_overlap 4661740 CCGCGCAAAACAAAA CGGCGCGGAA AAC TCCCGCGCCG TTAACGATTACTAAC RPE_4166 4662633 - 4661800 - | hypothetical protein RPE_4167 4664091 - 4662889 - | major facilitator transporter TERM 4175 4663255 - 4663235 - G 73 -13.9 -3.12378 | AACCAGATCACGTAA CGGCGGCCG AAG CGGTCGCCG AGCGGTCCGCCGAAG TERM 4176 4664205 - 4664181 - R 81 -10 -4.16943 | gap 1 GGCGAGACGGGAAAA GCGACCGGCAC CAGG GCG-CGGTCGC TTAACAAAATCTAAA TERM 4177 4664253 - 4664215 - R 100 -16.8 -4.63218 | overlap 4664221 GGTCGCTTAACAAAA TCTAAACGGCGCCAACGC CAA GCGCTAGCGCCGTTAAAA CCATAGCTGGGTTGC TERM 4178 4664247 - 4664221 - R 100 -18 -3.99986 | overlap 4664215 TTAACAAAATCTAAA CGGCGCCAACGC CAA GCGCTAGCGCCG TTAAAACCATAGCTG RPE_4168 4665636 - 4664284 - | phosphoglucosamine mutase TERM 4179 4664478 - 4664506 + g 78 -6 -4.61231 | gap 2 TGACGTCGGCGTCGT CGAGCGGCTTGCCG GCG CGG-AAGC-GCACG TTTTTCAGGATCTGC RPE_4169 4666026 - 4665868 - | hypothetical protein RPE_4170 4666190 - 4667329 + | L-lactate dehydrogenase (cytochrome) RPE_4171 4668381 - 4667512 - | shikimate 5-dehydrogenase RPE_4172 4668632 - 4668378 - | XRE family transcriptional regulator TERM 4180 4668689 - 4668727 + r 76 -13.2 -3.45054 | opp_overlap 4668691, overlap 4668690 CATGCCGCACATATA AACGGCTTCGGTGATG CTTCATA CATCACCGAAGCCGCG TTGTGGATTATGGCC TERM 4181 4668690 - 4668726 + r 80 -16.7 -2.66711 | opp_overlap 4668691, overlap 4668689 ATGCCGCACATATAA ACGGCTTCGGTGATG CTTCATA CATCACCGAAGCCGC GTTGTGGATTATGGC TERM 4182 4668725 - 4668691 - R 100 -20.9 -4.12532 | opp_overlap 4668690 4668689 TGCCGCACATATAAA CGGCTTCGGTGATGC TTCAT ACATCACCGAAGCCG CGTTGTGGATTATGG RPE_4173 4670794 - 4668746 - | elongation factor G TERM 4183 4669919 - 4669966 + g 81 -16.2 -3.14132 | gap 1 ATAGGCCAGTGCGTC GCTTCCGGTGGCGCCGAG-CCGC GAC GCGGTCTCGGTGACGTCGGGCGC TTCGTGGCGCAACGC TERM 4184 4670417 - 4670402 - G 86 -4.6 -5.1356 | opp_overlap 4670402, overlap 4670403 GTTGAGGAACAAAAA TCTCGG AATG CCGAGG TCTTCCAGCTCGCGC RPE_4174 4671488 - 4671015 - | hypothetical protein TERM 4185 4671713 - 4671732 + r 93 -16.4 -3.75332 | opp_overlap 4671713 CAGCCGCAGCAAAAA GGGCCCGC GTGA GCGGGCCC TTTGCATTAGCGCGT TERM 4186 4671732 - 4671713 - R 100 -16.4 -4.72986 | opp_overlap 4671713 CAGCCGCAGCAAAAA GGGCCCGC GTGA GCGGGCCC TTTGCATTAGCGCGT RPE_4175 4672284 - 4671769 - | hypothetical protein TERM 4187 4672355 - 4672333 - R 70 -12 -3.11634 | opp_overlap 4672323 4672322, overlap 4672328 4672348 GCGCACAGGACGCAA GCGCCGTGTT CAA AACAAGGCGC TCGCCTCCACATTTT RPE_4176 4673612 - 4672410 - | aspartate aminotransferase RPE_4177 4674077 - 4674721 + | glutathione S-transferase TERM 4188 4674822 - 4674855 + F 84 -11.1 -4.11216 | gap 1, opp_overlap 4674822 CCGATACCGCCAATA TTCCTAAT-CCCGGCG ATT CGTCGGGGATTGGGGA TTTTGACCATGGACC RPE_4178 4675127 - 4676293 + | glucose sorbosone dehydrogenase RPE_4179 4676842 - 4676492 - | hypothetical protein TERM 4189 4677248 - 4677294 + G 100 -21.6 -3.16564 | opp_overlap 4677239, overlap 4677236 AATGCAGCGGAGCAT TCCGCACCTCTATCACCGCGCG TTG TGCGCGCTGGTCGGGGTGCGGA TTCGTGAGGTCGGCA RPE_4180 4677141 - 4677974 + | phospholipid/glycerol acyltransferase TERM 4190 4678525 - 4678573 + G 76 -5.9 -4.52589 | overlap 4678520 4678525 4678526 ACTCGAATTTTCCGG C-CTGGCGGATCGCCGAAGCCGA ATATG TCGGCCGCG-CGCTCGGCCAGCG TTTTGTCTCGGCGCA RPE_4181 4678065 - 4679003 + | aldo/keto reductase RPE_4182 4680089 - 4679571 - | hypothetical protein TERM 4191 4680548 - 4680528 - H 71 -6.1 -4.33153 | opp_overlap 4680545 CGGAACATGAACAAA CTCGCGCAA GCT TTGCTCAAG TCACTCATTGGATGT RPE_4183 4680951 - 4681391 + | hypothetical protein TERM 4192 4681492 - 4681453 - f 78 -15.9 -2.80784 | opp_overlap 4681442 4681450, overlap 4681442 4681450 CAAATGCAGCAATGA CGACGTCA-CGGCGGCACT TTAT AGTGCCGCCGCTGAC-CCG CTCGCATCGTTGCGG RPE_4184 4681528 - 4681728 + | hypothetical protein TERM 4193 4681770 - 4681756 - g 70 -6.4 -4.18018 | overlap 4681759 CTGCCGGATGCAAAA CATCGC ACA GCAATG GCGGGTCGAGGCGGT TERM 4194 4682139 - 4682112 - g 73 -6.2 -4.42386 | gap 1, overlap 4682113 4682114 CCTCGACGCAGAAAA CCGCCGACCAGCA TCT CAC-GCTCGGCGG CATCCGCGGCCGGTT RPE_4185 4681748 - 4682470 + | HAD family hydrolase TERM 4195 4682554 - 4682531 - T 84 -16 -3.06183 | gap 1, overlap 4682545 GTCATTGCGAGCCAA CGGGTCGGCGC AAA GCGCCG-CCCG ATGACAGGCTCCGCG TERM 4196 4682568 - 4682611 + T 71 -14.1 -2.55544 | overlap 4682565 4682572 4682582 CGATGACAGGCTCCG CGAAGCAATCCAG-TTCGCCG TGCA CGG-GATTCTGGATTGCTTCG TCGCTTCGCTCCTCG RPE_4186 4683579 - 4682884 - | glutathione S-transferase RPE_4187 4684429 - 4683722 - | glutathione S-transferase RPE_4188 4684700 - 4685089 + | hypothetical protein RPE_4189 4687285 - 4685297 - | beta-lactamase domain-containing protein TERM 4197 4687589 - 4687603 + G 81 -12.8 -3.85698 | ACGCCGGCGCAGGCG GCCGCG CTG CGCGGC TTTCTCGACGCGCGC RPE_4190 4687523 - 4688575 + | hypothetical protein TERM 4198 4688559 - 4688586 + F 81 -9.9 -4.15044 | gap 2 CGATGCGGCGGCTAA GGGTGGCGCCGGC GTAG GCCG-CGC-ACCC TTTATTCGCCGCCGA TERM 4199 4688656 - 4688642 - g 80 -9.2 -4.19472 | GAAGACACCCGAAAA GCCGAC CAA GCCGGC AAAAACCCCGATATC RPE_4191 4688622 - 4691693 + | excinuclease ABC subunit B TERM 4200 4691751 - 4691708 - T 93 -18.2 -3.32521 | opp_overlap 4691716 4691748, overlap 4691699 4691688 4691716 AGCAGAGCGCGACAA CGCGCAAAGCCACCGCAACC GGCG GGTTGCGATGGCTCTGTCCG CATTGCGGCTGTGCT TERM 4201 4691743 - 4691716 - T 100 -17.8 -3.62591 | opp_overlap 4691716, overlap 4691688 4691708 GCGACAACGCGCAAA GCCACCGCAACC GGCG GGTTGCGATGGC TCTGTCCGCATTGCG TERM 4202 4691716 - 4691743 + T 79 -15.6 -2.89742 | opp_overlap 4691688 4691716 4691708 GCGACAACGCGCAAA GCCACCGCAACC GGCG GGTTGCGATGGC TCTGTCCGCATTGCG TERM 4203 4691790 - 4691816 + T 70 -11.6 -3.21218 | opp_overlap 4691777 CATTGCGCGGAGCGG TCGCGCCGAT CCGCGTC GTCGGCGCGA TTACTGCTCGCGGAT RPE_4192 4692221 - 4691817 - | hypothetical protein RPE_4193 4692685 - 4692374 - | hypothetical protein TERM 4204 4692447 - 4692484 + g 100 -18.3 -4.08767 | opp_overlap 4692440 AGCACATACTCGCCG CGCGCCAGCGTCGCCGC ACTG GCGGCGACCACGGCGCG TTTTGGACAGATGCC RPE_4194 4692864 - 4693160 + | hypothetical protein RPE_4195 4693163 - 4693450 + | putative transcriptional regulator RPE_4196 4693576 - 4693809 + | hypothetical protein RPE_4197 4693831 - 4694004 + | YcfA family protein TERM 4205 4694413 - 4694433 + T 71 -14 -2.54896 | opp_overlap 4694408 4694413, overlap 4694410 TGGTCTAGAACTGAA TGGCCGGG ACGAG CCCGGCCA TGACTTAGCTGGCAG TERM 4206 4694433 - 4694413 - T 76 -14 -3.23274 | opp_overlap 4694413 4694410, overlap 4694408 TGGTCTAGAACTGAA TGGCCGGG ACGAG CCCGGCCA TGACTTAGCTGGCAG RPE_4198 4695725 - 4694472 - | acetyl-CoA acetyltransferase TERM 4207 4696443 - 4696408 - g 83 -4.5 -5.00616 | overlap 4696409 4696412 CCGCCGTGGAAAAAA TGAACCAGCTGCGCG CCGCCT CGCTCGGCCGGCTCG ACGACGGCGCCGACA RPE_4199 4696122 - 4698206 + | methyl-accepting chemotaxis sensory transducer RPE_4200 4698309 - 4698683 + | hypothetical protein TERM 4208 4698744 - 4698721 - T 84 -16 -3.05384 | gap 1 GTCTTTGCGAGCCAA CGGGTCGGCGC GAA GCGCCG-CCCG ATGACAGGCTCCGCG TERM 4209 4698758 - 4698801 + T 77 -15.4 -2.55544 | gap 1, opp_overlap 4698766 4698770, overlap 4698755 4698762 4698766 CGATGACAGGCTCCG CGAAGCAATCCA-GTGCCGCG CAC CGTGACTCCTGGATTGCTTCG TCGCTTCGCTCCTCG RPE_4201 4699109 - 4698861 - | hypothetical protein RPE_4202 4700158 - 4699271 - | NAD-dependent epimerase/dehydratase TERM 4210 4699669 - 4699652 - G 85 -9.8 -4.27211 | overlap 4699647 CGGAAAGAAATGAAA GCGGCG GATCAG CGCCGC GATCCGCGACACGTT TERM 4211 4699801 - 4699758 - G 79 -8 -4.56597 | opp_overlap 4699765, overlap 4699759 4699760 4699762 TGGGCGGCGCAAAAA TCGATGATGCGGCGCTCGGC CTCG GCCCAGCGGCGGATCATCTC GCGCTCGTCCGGATC TERM 4212 4699799 - 4699760 - G 71 -15 -2.60032 | opp_overlap 4699765, overlap 4699759 4699758 4699762 GGCGGCGCAAAAATC GATGATGCGGCGCTCGGC CTCG GCCCAGCGGCGGATCATC TCGCGCTCGTCCGGA TERM 4213 4700134 - 4700107 - G 82 -17 -2.84325 | opp_overlap 4700105, overlap 4700102 TGGCGCCAAATACCA GCGGCCGCCGAT CAGC ATCGGCGGCCGA AATAGTGTCGGCGGT RPE_4203 4701613 - 4700183 - | S-adenosyl-L-homocysteine hydrolase TERM 4214 4701823 - 4701791 - R 75 -15 -2.71011 | gap 1 ATCGCTGCGCAATGA TCCGACCTCTCCCCG CAAG CGGGGAGAGGT-GAA GGGGCGTCGACTCGT RPE_4204 4703075 - 4701879 - | S-adenosylmethionine synthetase TERM 4215 4702278 - 4702254 - G 71 -12.7 -3.28791 | opp_overlap 4702255 ATCCTTGCCGGAGAA CGCGCCGCCGC CAT GCGGGGCCGCG CCGCCGTAGGTGTCG TERM 4216 4702857 - 4702902 + g 70 -10.3 -3.75024 | gap 1, overlap 4702886 ATGCTCGATGTGCTC GTTGGTGACCGAC-GCGGGTCC GCG GGTCTCGCCGGCGATCACCACC TTGTTGGTGGTGGCC TERM 4217 4702886 - 4702921 + g 70 -11.1 -3.53012 | overlap 4702857 CGGGTCCGCGGGTCT CGCCGGCGATCACCA CCTTGT TGGTGGTGGCCAGCG TTTCGCACGCGGCGC RPE_4205 4704488 - 4703133 - | hypothetical protein TERM 4218 4703764 - 4703781 + g 72 -6.9 -4.25104 | ATGCCGGATTTCTGG CTGACGC TGGC GCGCCAG TTTTCCTCGAGGAAG TERM 4219 4705107 - 4705080 - g 84 -17 -3.21099 | CGTCGTGATCACCAA GTCGACGGTGCC GGTC GGCACCGGCGAC GAGGTCGAGCGGCTG TERM 4220 4705422 - 4705411 - g 74 -5.8 -4.57073 | overlap 4705413 GATCTCGCCGAAAAA GTCG GTGC CGAC GTCCAGGAAGTGGCG RPE_4206 4704721 - 4706031 + | UDP-glucose 6-dehydrogenase TERM 4221 4707100 - 4707150 + G 79 -11.8 -3.78775 | gap 3, opp_overlap 4707103, overlap 4707100 4707103 GGCCGAGCCGCGCAA G-GACGCCGCGCCCGAGCAGGCCGC GCCG GCCGCC-GC-CGAGCGCCGCGTCGC TTTGGTGATCGGCAA TERM 4222 4707146 - 4707103 - g 72 -14.5 -2.71364 | gap 2, opp_overlap 4707100 4707100 4707103 CGAGCCGCGCAAGGA CGCCGCGCCCGAGCAGGCCGC GCCG GCCGCC-GC-CGAGCGCCGCG TCGCTTTGGTGATCG TERM 4223 4707313 - 4707341 + G 85 -18.2 -2.68434 | gap 1, overlap 4707310 GACGCGGGATTTCCT GCGCCAGGCGGCG CGGG CGCCGC-TGGCGC TGATGTACTATGCCG RPE_4207 4706147 - 4707856 + | peptidase C14, caspase catalytic subunit p20 RPE_4208 4708299 - 4707892 - | hypothetical protein RPE_4209 4709446 - 4708328 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 4224 4708601 - 4708578 - G 77 -11 -3.76224 | gap 1, opp_overlap 4708588, overlap 4708582 CCCCGAGGCAGGAAA CG-CAGCGGCT CGA AGCCGCCGGCG CGGTCGGAATCGTAT RPE_4210 4710223 - 4709498 - | ABC transporter related RPE_4211 4710968 - 4710216 - | ABC transporter related RPE_4212 4711996 - 4710965 - | inner-membrane translocator TERM 4225 4711924 - 4711903 - G 89 -5.1 -5.19879 | gap 1 GCGGAAACAGAAAAA TGG-TTGCCG CTG CGGCGAGCCA GAACGCCAGTTCGGC RPE_4213 4712867 - 4712001 - | inner-membrane translocator RPE_4214 4713058 - 4714098 + | transposase IS116/IS110/IS902 family protein TERM 4226 4714135 - 4714103 - T 91 -19.1 -2.87211 | overlap 4714081 4714121 4714122 ACGCCGCCTGAGAGA TCGGCCGGCAGGCGA CAA TCGCCTGGCGGCCGG GCCGGAGCTGCAAGA TERM 4227 4714417 - 4714361 - T 77 -14.6 -2.87132 | GGGGCCGTCCACATA TG-GATTCCGGGCTTACGATCGCGCGAC GGC GTCGCACGATCGTGC-CCCGGAATGACA ACAACGCTACTTCTT RPE_4215 4715602 - 4714424 - | extracellular ligand-binding receptor TERM 4228 4714617 - 4714635 + g 70 -11.6 -3.38991 | overlap 4714616 GCGATCAGCGAATCG CCGTCGGC CTT GCCGCCGG TCTTCTTCAGCGCCT TERM 4229 4715671 - 4715685 + H 73 -8.5 -4.08394 | opp_overlap 4715664 4715660 4715661 ATAACCGAGCCGGTT CCGGC CTGTC GCCGG TTTTGAAAGGCATAT TERM 4230 4716177 - 4716145 - g 86 -7.6 -4.93877 | overlap 4716148 4716149 CTGGATGAAAGAAAA CGAGC-GCCGCCGTGC CAT GC-CGGCGGCCGAGCG GCAGCAACTCGAACA RPE_4216 4715882 - 4716223 + | hypothetical protein TERM 4231 4717075 - 4717097 + G 77 -12.6 -3.69702 | opp_overlap 4717059 TGGCCGCGCAATCCT GGGCGGCCGC GCT GCTGCTGCCC TTGTATTACCTGATG RPE_4217 4716363 - 4717379 + | glycosyl transferase family protein RPE_4218 4719287 - 4717380 - | polysaccharide biosynthesis protein CapD TERM 4232 4718252 - 4718264 + g 71 -9.1 -3.83026 | opp_overlap 4718261 TTCGGCCCTCGATCT CTGCC AAA GGCAG TTTGCTCTGCAGCGC TERM 4233 4719232 - 4719202 - G 74 -7.5 -4.25458 | gap 1, overlap 4719206 AATCGTAGGAAGAAA CTGACGACGACGGC GAAT GCCGTCA-CGCCCG CATCATGGATCGCGA purU 4720438 - 4719575 - | formyltetrahydrofolate deformylase RPE_4220 4720571 - 4721401 + | uroporphyrinogen III synthase HEM4 TERM 4234 4721763 - 4721753 - g 70 -8.2 -3.95584 | overlap 4721754 TGCCGAGGAATTAAA CGCC AAG GGCG GCGTGCTCGGCAAGA RPE_4221 4721586 - 4722818 + | ABC transporter, periplasmic branched chain amino acid binding protein TERM 4235 4722903 - 4722915 + F 70 -10.5 -3.59979 | overlap 4722889 GGCGTATCCGCGCGA CGCGG ACT CCGCG TTTCAGCTGAGACGC RPE_4222 4723032 - 4723979 + | inner-membrane translocator TERM 4236 4724796 - 4724806 + G 74 -2.4 -4.72272 | TCGCGGCCTATATCG GCGG CAT CGGC TTTTTCATCGGCCCG RPE_4223 4723976 - 4725277 + | inner-membrane translocator TERM 4237 4725434 - 4725454 + G 77 -5.3 -4.63218 | opp_overlap 4725438 TGATCTCAGGCTACA TGAAGCCGA CGG TCGGCAGCA TTTTGTTGCGCGAAG RPE_4224 4725274 - 4726023 + | ABC transporter related RPE_4225 4726023 - 4726718 + | ABC transporter related RPE_4226 4726823 - 4727722 + | ABC transporter related TERM 4238 4729029 - 4729017 - g 71 -9.1 -3.84406 | CGGCTACTACAAGAA CGAGG AAG CCTCG ACCGCCGACATCAAG RPE_4227 4727719 - 4729650 + | AMP-dependent synthetase and ligase TERM 4239 4729749 - 4729793 + T 88 -14.9 -3.72576 | GTTGCGATGATCCGA CCTCTCCCCGCGAGCGGGG AGAGGTG CGCTTCCCGCGGGGAGAGG TTTGCTGGGGCGGCG RPE_4228 4730219 - 4729854 - | hypothetical protein TERM 4240 4730369 - 4730406 + G 77 -6.9 -4.49981 | CTTCTGGTCAACGGC CTCGTGGTCGGCACGCT GTAT GGCGTGGTGGCGATGAG TTTTGTGCTGATCTA RPE_4229 4730330 - 4731223 + | inner-membrane translocator RPE_4230 4731230 - 4732303 + | inner-membrane translocator TERM 4241 4732555 - 4732542 - g 73 -9.5 -3.9461 | CTGGGTCAACAAGAA CGGCG GCGT CGCCG GCAAGCAGCTCAATG TERM 4242 4733201 - 4733180 - g 75 -9.3 -4.10007 | opp_overlap 4733193, overlap 4733169 AGAACGCCGCGAAAA CCGCCGGCG ACGC CGCCGATGG CGTGATCTTCCCGCT RPE_4231 4732363 - 4733643 + | putative branched-chain amino acid ABC transport system substrate-binding protein TERM 4243 4734474 - 4734446 - g 75 -4.5 -4.63218 | gap 1, overlap 4734447 GCTGGTCGAACAAAA TGCTCGCG-CCG CGCTGT CGGTCGCAAGCC ATGGCTACATCATGG RPE_4232 4733799 - 4734635 + | ABC transporter related TERM 4244 4735140 - 4735179 + G 72 -8.4 -4.07568 | opp_overlap 4735139 CTACATGCATCAGAC GGCGCGTCTGATCGCCAC GGTC GCGGGAATCGGACGCGGC TTTTCCGGCGGCGCC TERM 4245 4735249 - 4735207 - g 85 -15.5 -3.64703 | gap 1 GCCCGCGGATGGAAA TCCG-CCGCGCTTCAGCGCG GCCT CGCGCTGGGGCTCGGCCGGA CCGCGGCGGCGCTGA RPE_4233 4734802 - 4735971 + | glycosyl transferase, group 1 RPE_4234 4737426 - 4735972 - | aldehyde dehydrogenase RPE_4235 4738259 - 4737444 - | short-chain dehydrogenase/reductase SDR RPE_4236 4739335 - 4738262 - | N-acetylneuraminate synthase RPE_4237 4741096 - 4739411 - | capsule polysaccharide biosynthesis TERM 4246 4740731 - 4740719 - G 75 -9.1 -4.13767 | overlap 4740728 CGGCGGATGGCAAAA GCTGC AAA GCAGC TTGGCCGGACCATTG RPE_4238 4743030 - 4741093 - | transketolase, central region TERM 4247 4741267 - 4741229 - G 73 -13.7 -3.1355 | overlap 4741214 CCGATCGACAGGCAA CGCGGCATTCGCGCCGG ATTGG CCGTCGCCAGCGCCGCG AGCACATGCTGGCCC RPE_4239 4743845 - 4743066 - | acylneuraminate cytidylyltransferase RPE_4240 4744037 - 4744561 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase TERM 4248 4744645 - 4744612 - g 70 -13.2 -3.05463 | gap 1, opp_overlap 4744631 ACTTCGTGCAGCTAA GCGACGTCGAGCCGA TCTCG TC-GCGCGACGTCGC GAAGCGGCGCGCGGT RPE_4241 4744602 - 4745735 + | glycosyl transferase, group 1 RPE_4242 4746551 - 4745748 - | FkbM family methyltransferase RPE_4243 4747135 - 4746563 - | hypothetical protein RPE_4244 4747416 - 4747844 + | hypothetical protein TERM 4249 4748285 - 4748308 + G 100 -11.6 -4.68424 | CCGATCGCGCCGATC GCCGACGTCG AGGC CGGCGACGGC TTTTTCGATCAGTTC TERM 4250 4748582 - 4748563 - g 72 -13.6 -3.15544 | opp_overlap 4748578 CCTCACCCCGATCAA CGTCGAGG CTGG CCTCGACG TCCACGGCCGCCGCT RPE_4245 4747868 - 4748797 + | hypothetical protein RPE_4246 4749023 - 4749805 + | cephalosporin hydroxylase RPE_4247 4751996 - 4749957 - | glycosyl transferase family protein TERM 4251 4751020 - 4751006 - G 75 -7 -4.4261 | CCGCGAAGACCAAAA GCGCCG AAC CGCCGC CAACGAGGCCAAGCA TERM 4252 4751960 - 4751981 + g 74 -10.1 -3.85817 | gap 1 CATTGTAGACCGGGA GCCCCACCGT GAT GCGG-GGGGC TTTCTCGACAGGCAT RPE_4248 4753256 - 4752039 - | ABC transporter related TERM 4253 4752475 - 4752440 - G 77 -15.4 -3.06492 | opp_overlap 4752444 4752446 4752452, overlap 4752444 TCACGTAGTCGAACA CCAACCGCGCGCCCGC GCCG GCAGGCACGCTGTTGA TCGGCTTGCCATCGA TERM 4254 4752471 - 4752444 - G 73 -12.6 -3.37245 | opp_overlap 4752444 4752446 4752452, overlap 4752440 GTAGTCGAACACCAA CCGCGCGCCCGC GCCG GCAGGCACGCTG TTGATCGGCTTGCCA RPE_4249 4754103 - 4753273 - | ABC-2 type transporter RPE_4250 4755505 - 4754303 - | glycosyl transferase, group 1 TERM 4255 4754542 - 4754530 - G 71 -3.3 -4.59853 | CGAAGGCGTCAAAAA GAAGC GCC GCATC ACCCACCACCTCAGG RPE_4251 4757576 - 4755843 - | hypothetical protein TERM 4256 4756072 - 4756048 - G 95 -4.3 -5.4505 | gap 1, overlap 4756050 CGCCTGAAGAAAAAA TG-GTACGCG TATTTG CGCGCACGCA CCGTCTGCGCCTCGT RPE_4252 4758747 - 4757581 - | DegT/DnrJ/EryC1/StrS aminotransferase RPE_4253 4759061 - 4759825 + | glucose-1-phosphate cytidylyltransferase TERM 4257 4760321 - 4760343 + G 75 -4.7 -4.65895 | CCTGCTGCGAACTGG CGATCGCCG CCTAC CGCCGCTCG TTTTTCGATGAAGGC RPE_4254 4759825 - 4760886 + | CDP-glucose 4,6-dehydratase RPE_4255 4760883 - 4762109 + | C-methyltransferase RPE_4256 4762109 - 4762642 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 4258 4762803 - 4762818 + G 74 -2.5 -4.82901 | opp_overlap 4762756, overlap 4762763 4762799 GGTGGTGGTCGGGCG CGATG GTCTGG CGTCG TTTTTGTCGCGCCGC TERM 4259 4763000 - 4763044 + G 75 -15.5 -2.71263 | opp_overlap 4763023 GGTCGCACGTGCTCG CGCAAGCCGCGCTGGCCACCG AAG CGCGGGTCGGCGCGGCGTGCA TCCTTAACACCAGTT TERM 4260 4763189 - 4763222 + G 76 -15.3 -2.82516 | overlap 4763180 4763189 4763191 TCATGAGCGGAGTCC GGATCGGCGCCGATA CTAT TATCGGCGCCGGCTC TGTCGTGGTCCGCGA TERM 4261 4763191 - 4763220 + G 72 -14.3 -2.96216 | overlap 4763180 4763189 4763189 ATGAGCGGAGTCCGG ATCGGCGCCGATA CTAT TATCGGCGCCGGC TCTGTCGTGGTCCGC RPE_4257 4762639 - 4763316 + | hexapaptide repeat-containing transferase RPE_4258 4763336 - 4764523 + | hypothetical protein RPE_4259 4764549 - 4765976 + | membrane bound O-acyl transferase, MBOAT family protein RPE_4260 4767021 - 4766047 - | NAD-dependent epimerase/dehydratase TERM 4262 4766927 - 4766905 - G 78 -6.2 -4.70659 | CTCCACATCGAAAAA CGGCAGGA TGACATG TCCAGCCG GTTCCGCCGCCAGCG RPE_4261 4768037 - 4767066 - | GDP-mannose 4,6-dehydratase RPE_4262 4768618 - 4768085 - | hypothetical protein TERM 4263 4768360 - 4768371 + g 77 -3.6 -4.84359 | overlap 4768353 GGCCGCATTGCAGGC CGGC GCAC GTCG TTTTTCTCGACATGC RPE_4263 4770190 - 4768955 - | major facilitator transporter flhA 4770372 - 4772606 + | flagellar biosynthesis protein FlhA TERM 4264 4772607 - 4772620 + F 76 -5.9 -4.56597 | opp_overlap 4772590, overlap 4772590 GTCGGAAGCATCTGA GTCGC CTCC GCGGC TTTTTCGCCACAGCC TERM 4265 4772628 - 4772641 + F 72 -3.8 -4.60487 | TCCGCGGCTTTTTCG CCAC AGCCAA GTGG TTTTTGAGAATCCTC RPE_4265 4772913 - 4773113 + | hypothetical protein TERM 4266 4773209 - 4773227 + T 100 -11.6 -5.25735 | opp_overlap 4773209 GACCCACGAGAAAAA CGCCCGCG CCC CACGGGCG TTTTTCATTTTTTGC TERM 4267 4773227 - 4773209 - T 100 -13.8 -4.9218 | opp_overlap 4773209 GACCCACGAGAAAAA CGCCCGCG CCC CACGGGCG TTTTTCATTTTTTGC RPE_4266 4774231 - 4773293 - | hypothetical protein RPE_4267 4774779 - 4774231 - | ECF subfamily RNA polymerase sigma-24 factor TERM 4268 4774925 - 4774906 - R 100 -12.1 -4.67556 | opp_overlap 4774906 AGAAGACGCGAAAAA CCCGGGC GTTGCG GCCCGGG TTCGTCAAGAATGAG TERM 4269 4774906 - 4774925 + r 70 -12.1 -3.14931 | opp_overlap 4774906 AGAAGACGCGAAAAA CCCGGGC GTTGCG GCCCGGG TTCGTCAAGAATGAG RPE_4268 4775379 - 4774960 - | flagellar export FliJ fliI 4776815 - 4775490 - | flagellum-specific ATP synthase TERM 4270 4777023 - 4777010 - H 78 -3.1 -5.09426 | overlap 4777011 TGTAACTGCAAAAAA CTGCT TCTG AGCAA TATCTTAAGGCGATT RPE_4270 4777190 - 4777891 + | two component transcriptional regulator TERM 4271 4777936 - 4777955 + T 100 -12.8 -5.27335 | opp_overlap 4777936 CACCTCCCGACTGAA CCCCGCCG CAAA TGGCGGGG TTTTTGTTTGGGGCG RPE_4271 4779037 - 4778018 - | UDP-glucose 4-epimerase TERM 4272 4778621 - 4778641 + g 73 -3.9 -4.59773 | overlap 4778610 4778622 GGTCGCCGACAGCGG ATGGCTCTC GTC GAGAGGCAG TTTTTGCGGCTCGCC RPE_4272 4780531 - 4779119 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase RPE_4273 4781110 - 4780664 - | GtrA family protein RPE_4274 4781813 - 4781238 - | lysine exporter protein LysE/YggA RPE_4275 4782038 - 4782775 + | transglutaminase domain-containing protein RPE_4276 4784527 - 4782842 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 4273 4783720 - 4783745 + g 71 -9.7 -3.8211 | TGCGCGCCATGTCCT GCTGCTGTTCG CGGT CGAACGCCAGC TTGTTCTGCATCGCC RPE_4278 4787178 - 4785679 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 4274 4786160 - 4786136 - G 70 -4.2 -4.55295 | opp_overlap 4786148 GCGTTGAGAAAGAAA TGCCCGGATT TCTCG AAGCCGGCCA GCGCCTTCGATTCAT TERM 4275 4788291 - 4788321 + G 91 -16.2 -3.86822 | gap 1, opp_overlap 4788309, overlap 4788295 CCGCTCCGGTCGCGA TCGCGCCGCCGCG GAACAG CGC-GCGGCGCGA TTTCTGCAGGCGTTA RPE_4279 4787341 - 4788492 + | mannose-6-phosphate isomerase RPE_4280 4789395 - 4788517 - | MCP methyltransferase, CheR-type RPE_4281 4790561 - 4789392 - | chemotaxis-specific methylesterase RPE_4282 4791001 - 4790636 - | response regulator receiver protein RPE_4283 4791566 - 4791075 - | CheW protein RPE_4284 4794415 - 4791572 - | CheA signal transduction histidine kinases TERM 4276 4792349 - 4792329 - G 77 -10.3 -3.93695 | GTCACCAGCGACAAA GGCACCGCC TTG GGCTGCGCC GTGCCGGCGCGGAAC RPE_4285 4795237 - 4794563 - | hypothetical protein RPE_4286 4795428 - 4796267 + | inositol monophosphatase RPE_4287 4796828 - 4796268 - | hypothetical protein TERM 4277 4796735 - 4796745 + g 81 -8.2 -4.49556 | opp_overlap 4796732, overlap 4796733 TCAGGGCCAAACCGC GGCG AAC CGCC TTTATTTGCTGCCGC TERM 4278 4797028 - 4797038 + G 70 -2.4 -4.59109 | overlap 4797006 4797005 ACGAGTTGGCCTCGG CCGG ACA CCGC TTTTTCGGCAATGTC RPE_4288 4796880 - 4797479 + | hypothetical protein TERM 4279 4798203 - 4798176 - g 72 -5.5 -4.37886 | gap 1, overlap 4798177 4798178 CGAGCTGTCAGAAAA GTCGCTGACGGC GGATA GCCGCCAG-GTC GAACTGGTCGCCGTG TERM 4280 4798368 - 4798336 - g 75 -15.5 -2.71731 | overlap 4798353 GCCAGCCGCGAACTA GCCGAGGCGCGCGAC AAG GTCGCGAGCCTGAGC CTTCGGGTCACCGAT RPE_4289 4797703 - 4798908 + | hypothetical protein RPE_4290 4799849 - 4799361 - | ferric uptake regulator family protein RPE_4291 4800691 - 4799993 - | ABC transporter related RPE_4292 4801472 - 4800675 - | cobalt ABC transporter, inner membrane subunit CbiQ RPE_4293 4802095 - 4801472 - | hypothetical protein RPE_4294 4802723 - 4802100 - | cobalt transport protein CbiM TERM 4281 4802527 - 4802494 - G 81 -10.9 -4.09511 | overlap 4802495 4802497 AACAGTGCGGGAAAA GCAGCCCAACCGAGC ACCA GCCCGGCTAGGCCGT TGACGATGAGATGAA TERM 4282 4802526 - 4802495 - G 72 -14.4 -3.05224 | overlap 4802494 4802497 ACAGTGCGGGAAAAG CAGCCCAACCGAGC ACCA GCCCGGCTAGGCCG TTGACGATGAGATGA TERM 4283 4802524 - 4802497 - G 72 -13.4 -3.08211 | overlap 4802495 4802494 AGTGCGGGAAAAGCA GCCCAACCGAGC ACCA GCCCGGCTAGGC CGTTGACGATGAGAT RPE_4295 4803535 - 4802741 - | hypothetical protein TERM 4284 4804914 - 4804929 + G 83 -3.2 -5.2189 | opp_overlap 4804903 AACAGGAGGATCCCT CGAACA TTTC TGGTCG TTTTTTGATGGTTGC RPE_4296 4804580 - 4805044 + | thioesterase superfamily protein RPE_4297 4805603 - 4805893 + | hypothetical protein RPE_4298 4806779 - 4805973 - | Flp pilus assembly CpaB TERM 4285 4806162 - 4806186 + g 70 -11.4 -3.36671 | overlap 4806137 4806173 GGGCAGGAGTTCGAG CGTGGCCGTC TTGCC GACGGCAACG TTCTGCCCTTCGCGT TERM 4286 4806249 - 4806264 + g 83 -9 -4.4078 | opp_overlap 4806248 4806249 GACGTTGGTGAGAAT CGTGAC CGAG GTCACG TTTTCCTTCGACGAC TERM 4287 4806279 - 4806291 + g 72 -4.8 -4.43877 | GTTTTCCTTCGACGA CTCG CTGTC CGAG TTTCTTTCGCGCTTC RPE_4299 4807111 - 4807422 + | hypothetical protein TERM 4288 4807574 - 4807608 + T 93 -7.8 -5.05782 | opp_overlap 4807577, overlap 4807566 4807575 4807577 4807578 TGTACGCCGCCAAGC AGATGGCTCGGAGTGA GTT TCACTTCGGGCCGTAG TTTTTTGGGGTGCAT TERM 4289 4807575 - 4807607 + T 73 -11.3 -3.62746 | opp_overlap 4807577, overlap 4807566 4807574 4807577 4807578 GTACGCCGCCAAGCA GATGGCTCGGAGTGA GTT TCACTTCGGGCCGTA GTTTTTTGGGGTGCA TERM 4290 4807577 - 4807605 + T 77 -13.9 -3.38726 | opp_overlap 4807577, overlap 4807566 4807575 4807574 4807578 ACGCCGCCAAGCAGA TGGCTCGGAGTGA GTT TCACTTCGGGCCG TAGTTTTTTGGGGTG TERM 4291 4807578 - 4807604 + T 77 -15.2 -2.62513 | opp_overlap 4807577, overlap 4807566 4807577 4807575 4807574 CGCCGCCAAGCAGAT GGCTCGGAGTGA GTT TCACTTCGGGCC GTAGTTTTTTGGGGT RPE_4300 4809236 - 4807698 - | hypothetical protein TERM 4292 4808527 - 4808514 - G 80 -9.5 -4.18018 | CCGGTCGATCGAAAA GCGGC CGCG GCCGC GCGCCATCACCGGAT RPE_4301 4809399 - 4809971 + | ErfK/YbiS/YcfS/YnhG family protein TERM 4293 4810024 - 4809968 - f 70 -10.1 -3.61398 | gap 2, opp_overlap 4809981 4809997, overlap 4809972 CGTGGTGGTGAAGAA CTGA-GCAACACCG-CGCCCGCCGGCG TTTTG CGCCGGCATCCGGCGCTGTTGCGTCCG ATCGCGGCCGCGCTT TERM 4294 4810019 - 4809972 - f 71 -14.1 -2.6563 | gap 1, opp_overlap 4809981 4809997, overlap 4809968 GTGGTGAAGAACTGA GCAACACCG-CGCCCGCCGGCG TTTTG CGCCGGCATCCGGCGCTGTTGC GTCCGATCGCGGCCG TERM 4295 4809981 - 4809992 + F 70 -7.2 -4.07885 | opp_overlap 4809972 4809968 AACTGAGCAACACCG CGCC CGCC GGCG TTTTGCGCCGGCATC TERM 4296 4809997 - 4810013 + G 76 -15.1 -3.09327 | opp_overlap 4809972 4809968 GCCCGCCGGCGTTTT GCGCCGG CAT CCGGCGC TGTTGCGTCCGATCG RPE_4302 4809995 - 4810801 + | hypothetical protein RPE_4303 4811923 - 4810805 - | peptidase M48, Ste24p TERM 4297 4810858 - 4810889 + g 78 -15.8 -3.14132 | overlap 4810862 CCGCTGGCGTCAGCA GCGGCTCGCCGCGC GACG GCGCGTCGAGTTGC TTCATCCGCGCCAGC TERM 4298 4810862 - 4810885 + g 77 -13.8 -3.39895 | overlap 4810858 TGGCGTCAGCAGCGG CTCGCCGCGC GACG GCGCGTCGAG TTGCTTCATCCGCGC RPE_4304 4813084 - 4811927 - | hypothetical protein RPE_4305 4815014 - 4813332 - | benzoylformate decarboxylase TERM 4299 4813822 - 4813798 - G 78 -14.3 -3.49475 | opp_overlap 4813794 CGCATCGGCAGACAA CGTTGCATCGC CGG GCGATGCGACG GCGCTTCCTCGACCA TERM 4300 4813897 - 4813943 + g 77 -10.7 -3.79481 | gap 1, opp_overlap 4813884 4813928, overlap 4813900 TACTCCGCCGCGATC GGATCGGCC-GCCGCGGGTGGC GGCG GCAACACGCGCCCGGCCGGTGC TTTGCGTTGCGTTTC TERM 4301 4814210 - 4814197 - G 72 -5.2 -4.36914 | overlap 4814205 4814207 4814208 GCGGCGTGCAGAAAA CCGC AAAACA GCGG ATGCCGTTCCGGAAA RPE_4306 4816104 - 4815247 - | hypothetical protein RPE_4307 4817231 - 4816119 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 4302 4816715 - 4816768 + g 70 -11 -3.53012 | gap 3, opp_overlap 4816694 CCAGGATCGCGGCAT GCGCCGCGGCGCCGGTGGCGACGTCGA CGA TCGACAT-GCCGAC-GCGC-GAGGCGC TTTCCGGCCCGCCGG TERM 4303 4817187 - 4817176 - G 77 -5.8 -4.66833 | overlap 4817177 CGCGAACTGCAAAAA GGTG CCGC CACC GCCTGTTCGACGGCG RPE_4308 4818589 - 4817417 - | acyl-CoA dehydrogenase domain-containing protein RPE_4309 4819900 - 4818635 - | cytochrome P450 TERM 4304 4820053 - 4820089 + H 73 -6.3 -4.37886 | CCGCTTCATGGTCTT GCGTCTGGACGCTGCCG CAA CCGCAGCCGCCCCACGC TTTTGTCCGCAGTGA RPE_4310 4820169 - 4821341 + | acyl-CoA dehydrogenase domain-containing protein RPE_4311 4822240 - 4821434 - | short-chain dehydrogenase/reductase SDR TERM 4305 4821937 - 4821947 + g 72 -8.2 -4.07568 | overlap 4821932 ACGGGCCATTGTCGG CGCC GCC GGCG TTTTCCGACAGCGGA RPE_4312 4822986 - 4822291 - | Hly-III related proteins TERM 4306 4823856 - 4823874 + G 77 -3.7 -4.72272 | overlap 4823860 GCAATTCGCGATGAG CCTGCTG CCGCC CGGCCGG TTTTTGATGCCCGGC RPE_4313 4823218 - 4824684 + | protein of unknown function DUF463, YcjX family protein TERM 4307 4825104 - 4825151 + G 72 -13.2 -3.15544 | overlap 4825082 ATGGTGCTGGCGGCC GCCGCCGGCCTCGCGCTCGCCG TGAT TGCCGGGCGCGAGATCGTCAGC TTGATCCGGATGGCG TERM 4308 4825189 - 4825179 - g 70 -2.4 -4.65895 | overlap 4825181 GCGGCGATCGAAAAA CTGC ATC GCCG CGCCGTGGTGGTGCT RPE_4314 4824681 - 4825814 + | hypothetical protein TERM 4309 4825879 - 4825896 + F 78 -6.3 -4.56597 | gap 1, overlap 4825879 4825880 CCCTCCAGTGCGCCG CT-GCGAC GCA GTCGCAAG TTTTTGACGGCAGCC RPE_4315 4826028 - 4826228 + | cold-shock DNA-binding domain-containing protein RPE_4316 4827018 - 4826380 - | hypothetical protein TERM 4310 4828765 - 4828788 + G 81 -8.8 -4.56597 | opp_overlap 4828736, overlap 4828752 4828769 CACGCGCGGAATCCG CGCATCGCGC TGCC GCGCGATCTG TTTTTGCCGCGGCCA TERM 4311 4829230 - 4829254 + G 86 -8.6 -4.82901 | gap 1, overlap 4829206 4829206 4829207 GTGTTCGTGGCGATC TCGCC-GTGGA ACTT TCCGCTGGCGA TTTTTGTCGGCCAGA RPE_4317 4827268 - 4830267 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 4312 4830452 - 4830498 + F 74 -13.1 -3.31144 | gap 1, opp_overlap 4830446 4830480, overlap 4830449 TGCATACGACGATGA CCTCGCTGGTCGG-GTCGCTTT GCAA AGAGTCACACCGACCGGTGAGG TTGTCGAAGTGGCGC TERM 4313 4830596 - 4830557 - f 74 -12.9 -3.32844 | opp_overlap 4830550, overlap 4830558 4830580 CGCGCTATGCGAGAA TGTCGACCTCTCCCCGC GCAAGA GCGGGGAGAGGTGAAGA AACGCCGCCGTTCTT TERM 4314 4830963 - 4830987 + F 71 -9.1 -3.68529 | opp_overlap 4830954 4830953, overlap 4830964 CAAAACCGCCGCCGG TGGCGCGCCGC AAG GCGACGCGCGG TTTCGCTGCTCCGCT RPE_4318 4831530 - 4832738 + | L-carnitine dehydratase/bile acid-inducible protein F RPE_4319 4833727 - 4832819 - | hypothetical protein TERM 4315 4833068 - 4833114 + g 72 -14.3 -3.05343 | gap 1, opp_overlap 4833090, overlap 4833071 CGAGCCGGTGACGTC TCTCGCCGG-CGTCGCGGCAAC AGGC GTCGCGGCGGCGACCGGCGTGG TCTTCAGCCTGTCGA TERM 4316 4833071 - 4833111 + g 80 -16.8 -2.74701 | gap 1, opp_overlap 4833090, overlap 4833068 GCCGGTGACGTCTCT CGCCGG-CGTCGCGGCAAC AGGC GTCGCGGCGGCGACCGGCG TGGTCTTCAGCCTGT TERM 4317 4833406 - 4833360 - G 82 -11.5 -4.13014 | gap 1, opp_overlap 4833387, overlap 4833370 GCCAGACGGCCAAAA CTCGAAGTGACGAGC-GCGCCG CCGA CGGCGCCGCCGATCACGGCGAG CGCGACCACGGCCGC TERM 4318 4833921 - 4833901 - R 73 -8.9 -4.07568 | opp_overlap 4833913, overlap 4833902 4833917 CGCGCCGTGCGAAAA TGCCGCGCT CAG AGCACGGCG GGCGCGTCGGGCAGT RPE_4320 4834406 - 4833909 - | hypothetical protein RPE_4321 4835294 - 4834410 - | hypothetical protein RPE_4322 4835927 - 4835319 - | hypothetical protein RPE_4323 4838448 - 4836127 - | carbon-monoxide dehydrogenase (acceptor) TERM 4319 4837053 - 4837090 + g 70 -9.9 -3.62522 | gap 1, overlap 4837059 CGATATAGCTGGTGA GGCCGCGGCCATAGAG CAGGCCT TTCT-TGGCGGCGGCC TTCTTGCGGGCCTTG TERM 4320 4837570 - 4837594 + g 77 -12.2 -3.64685 | gap 1, opp_overlap 4837568 GCCGACAAACTCATC GGTGCGCTCGG CGCG CC-AGCGCACC TTCTTGCCGAGTTTT TERM 4321 4838537 - 4838579 + r 84 -16.4 -3.06183 | opp_overlap 4838542 4838546, overlap 4838542 4838546 GGCACAGGCTCCGCG ACGAAGCAATCCAGGCCC TGTGCTC GGTCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 4322 4838574 - 4838542 - R 76 -13.5 -3.14211 | opp_overlap 4838537 4838542 4838546, overlap 4838546 AGGCTCCGCGACGAA GCAATCCAGGCCC TGTGCTC GGTCCTGGATTGC TTCGCTTCGCTCGCA TERM 4323 4838542 - 4838574 + r 76 -13.5 -3.19192 | opp_overlap 4838542 4838546, overlap 4838537 4838546 AGGCTCCGCGACGAA GCAATCCAGGCCC TGTGCTC GGTCCTGGATTGC TTCGCTTCGCTCGCA RPE_4324 4840161 - 4838626 - | AMP-dependent synthetase and ligase TERM 4324 4838713 - 4838752 + g 76 -15.1 -3.18429 | gap 1, opp_overlap 4838704, overlap 4838704 4838719 CAACGACTCCACGAT CGCCA-CGTCGGCGAGAC GCTGG GTCTTGCCGACTTTGGCG TTGGTCCAGGTTTTG TERM 4325 4838719 - 4838745 + g 83 -14.5 -3.67976 | opp_overlap 4838704, overlap 4838713 4838704 CTCCACGATCGCCAC GTCGGCGAGAC GCTGG GTCTTGCCGAC TTTGGCGTTGGTCCA RPE_4325 4840741 - 4840328 - | hypothetical protein TERM 4326 4840419 - 4840398 - G 83 -4.3 -5.00616 | overlap 4840399 4840400 CCCTCGGCCAAAAAA TCGCTGAGC AGCG GCTCGCCGA GCAGATAGCGCGCGG RPE_4326 4840948 - 4841790 + | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase RPE_4327 4842089 - 4842703 + | glutathione S-transferase RPE_4328 4843262 - 4842720 - | methylated-DNA--protein-cysteine methyltransferase TERM 4327 4842833 - 4842810 - G 82 -11.7 -4.08767 | gap 1 GCCATTGGCGGAAAA GCCGCCCGGC CTGTC GCCG-GCGGC GAGCACGCGATGGCA RPE_4329 4844392 - 4843295 - | glycosyl transferase, group 1 TERM 4328 4844130 - 4844112 - G 70 -3.7 -4.44667 | overlap 4844113 GCGGCGAAGAAGAAA TCCGCGC CCGGC ACGCGGT CGAACGCCACCAGCA RPE_4330 4845628 - 4844477 - | glycosyl transferase, group 1 TERM 4329 4844541 - 4844523 - G 77 -11 -3.86194 | AATGTTTCGTAGAAA TCGTCGCA CCG CGCGACGA CGTTGCGGACGTCGA TERM 4330 4845674 - 4845687 + H 78 -5.2 -4.77036 | CCCGATCCGACGCGG CGCG ACTTGA CGCG TTTTTCCTCATGAAC TERM 4331 4846785 - 4846801 + G 73 -3.6 -4.62471 | overlap 4846767 TGGGGACCGGACGTC TGGCTG CTACC CCGCCA TTTTTCGCCGTTGCC RPE_4331 4845759 - 4847195 + | O-antigen polymerase RPE_4332 4847752 - 4847156 - | hypothetical protein TERM 4332 4847984 - 4847940 - R 81 -16.5 -2.71011 | gap 1, overlap 4847923 ACCTCGTTTCAAGCA TCGGGG-CGCGATGCCGCGC ACGCAG GCGCGACATCGCAACCGCGA AACTCAGACGCCGGC RPE_4333 4849535 - 4847988 - | heme peroxidase RPE_4334 4850073 - 4849801 - | hypothetical protein TERM 4333 4850269 - 4850307 + H 78 -5.1 -4.68724 | gap 1, overlap 4850270 4850272 GGGTTGGGTGTGGCC GGCTCGAGCGGCG-GCTC GGCC GGGCTCGCCGTACGATCA TTTTGTCTTGCATGA TERM 4334 4850345 - 4850389 + H 87 -18.8 -2.63616 | opp_overlap 4850355, overlap 4850350 4850355 GGTTGCAGCTTGAGG CAACAAAAAACGCCGCTTCC TTTTT GGAAGCGGCGTTTTGTTTTG GTTGGTGTTGATCGT TERM 4335 4850350 - 4850384 + H 100 -17.3 -4.49337 | opp_overlap 4850355, overlap 4850345 4850355 CAGCTTGAGGCAACA AAAAACGCCGCTTCC TTTTT GGAAGCGGCGTTTTG TTTTGGTTGGTGTTG TERM 4336 4850379 - 4850355 - H 100 -17.2 -5.4833 | opp_overlap 4850350 4850345 4850355 TGAGGCAACAAAAAA CGCCGCTTCC TTTTT GGAAGCGGCG TTTTGTTTTGGTTGG TERM 4337 4850355 - 4850379 + H 100 -17.2 -5.18643 | opp_overlap 4850355, overlap 4850350 4850345 TGAGGCAACAAAAAA CGCCGCTTCC TTTTT GGAAGCGGCG TTTTGTTTTGGTTGG TERM 4338 4850619 - 4850633 + H 76 -6.4 -4.46675 | GAATAGTAAGATGTT GAGACG CGA TGTCTC TTTCTTCTATTCGCT TERM 4339 4851779 - 4851792 + H 81 -4.5 -5.06816 | GTCATCTTGCGATTT CGCAG AGCC CTGTG TTTTTGTTAAACAGT TERM 4340 4853411 - 4853391 - H 73 -11.2 -3.57971 | AGAGTTATTCCCAAA TCCAAGGC GCAAG GCCTTGGA GTTCCGGCTATCGAA TERM 4341 4856881 - 4856906 + G 85 -13.2 -4.14739 | overlap 4856874 4856902 TCTGACCGGCCTGTG CGGCGCAGCC TTGATC GGCGGCGCCG TTTTCGCGTCGCTCG TERM 4342 4857638 - 4857607 - g 77 -5.8 -4.61231 | gap 1, overlap 4857608 4857609 CCATATCGTCAAAAA GGGCG-ACAGCATCG CCA CGATCCTGCGCGACC AGGGTGCGACGGCCG TERM 4343 4858331 - 4858352 + G 78 -6.5 -4.65895 | gap 1 ACCGGCGTCGACTGG TCGGCG-CCC TAC GGCACGCCGA TTTTTGCCTCGGGCA RPE_4335 4856717 - 4858789 + | peptidase M23B TERM 4344 4858857 - 4858832 - f 76 -6.9 -4.4891 | gap 1 CGTATCAGCACAAAA GACATCCAGCTC TGC AAGCCGG-TGTC GCGCGGTCACCATCG TERM 4345 4859013 - 4859029 + G 70 -10.1 -3.65542 | opp_overlap 4859013, overlap 4859011 GCGATGAGGAGCAAA CTTGCGC GCG GCGCGAG TGTTTTGGCGATCGG TERM 4346 4860411 - 4860379 - g 93 -11.2 -4.31329 | opp_overlap 4860378 4860377, overlap 4860371 CCAAAAACCTCAAAA TGCCGGAAGGCATC GCGCT GACGCCGGCCGGCA GATTGATCGTCGCCG RPE_4336 4859001 - 4860629 + | NHL repeat-containing protein TERM 4347 4860675 - 4860644 - T 100 -23.2 -2.62184 | overlap 4860646 GTCCTTGCGACACCA TAGGCTCCGCAACG ATGC CGTTGCGGAGCCTA TCGGGCGGATCAATG TERM 4348 4860673 - 4860646 - T 100 -21.4 -2.85351 | overlap 4860644 CCTTGCGACACCATA GGCTCCGCAACG ATGC CGTTGCGGAGCC TATCGGGCGGATCAA RPE_4337 4863324 - 4860685 - | ATPase TERM 4349 4860889 - 4860903 + g 77 -7 -4.56597 | CGGGCGCGCGCCATA GGCCGG GTC CCAGCC TTTTTCGGCCAGCCA TERM 4350 4863551 - 4863499 - R 93 -18.6 -3.31144 | gap 2, overlap 4863500 GGGGGACTTTCACAA TTTCGTGG-GACGGCAGGCGTT-GGC CGA GCCGAACGCCTGCCGCCTCCAGGAAC GTCAGTCTTACGGCA TERM 4351 4863550 - 4863500 - R 100 -22.1 -2.58544 | gap 2, overlap 4863499 GGGGACTTTCACAAT TTCGTGG-GACGGCAGGCGTT-GGC CGA GCCGAACGCCTGCCGCCTCCAGGAA CGTCAGTCTTACGGC RPE_4338 4864320 - 4863559 - | hypothetical protein RPE_4339 4865302 - 4864610 - | methionine biosynthesis MetW metX 4866506 - 4865304 - | homoserine O-acetyltransferase TERM 4352 4865439 - 4865397 - G 76 -14.9 -3.21416 | gap 1, overlap 4865436 4865438 CACGTCGAGCAGGAA GGCGTCGT-GGCCGCGATCG GTCT CGATCTCGGCGAACGACACC CGCGCGCCGCCGGCG TERM 4353 4866591 - 4866565 - H 100 -14.5 -5.26316 | gap 1, opp_overlap 4866585 TCAGGCCACAAAAAA CCCGGCCTGAAC AATA GTTC-GGCCGGG ACATCGATCCCCGGC TERM 4354 4866585 - 4866607 + H 79 -9.1 -4.12599 | opp_overlap 4866565 CCTGAACAATAGTTC GGCCGGG ACATCGATC CCCGGCC TTTTAGCAAGTTGTT RPE_4341 4866851 - 4867702 + | hypothetical protein RPE_4342 4867730 - 4868827 + | histidinol-phosphate aminotransferase TERM 4355 4869334 - 4869312 - g 70 -6.1 -4.1899 | GGAGGCGACGGAAAA GCTCGCGGC GTTCT GGCGCGGGC TCGGCGCCAACGTCG TERM 4356 4869677 - 4869722 + G 77 -13.3 -3.53012 | opp_overlap 4869698 4869699 4869712 4869713 CCCGCACCCGCACCA TCCGCCGCGGCATCGTC GAAATCGGCCAG GACGAAGCCGCGCCGGA TTTCGGACGCAAGCA RPE_4343 4868824 - 4869759 + | cyclohexadienyl dehydrogenase TERM 4357 4870175 - 4870146 - g 79 -7.7 -4.56775 | overlap 4870148 4870163 4870166 4870167 AGTTGTGCCGAAAAA CTCCCGCCTCTCA AAAA TGAGGGGCGGCGG CGCGCCGCAGGGCGC TERM 4358 4870184 - 4870163 - g 74 -5.7 -4.56597 | opp_overlap 4870180, overlap 4870148 4870146 4870166 4870167 CCCGCCTCTCAAAAA TGAGGGGCG GCGG CGCGCCGCA GGGCGCGAGGGTAGC TERM 4359 4870180 - 4870208 + G 72 -5.1 -4.42386 | opp_overlap 4870166 4870163 4870167 AGGGGCGGCGGCGCG CCGCAGGGCGCGA GGG TAGCGTTTCGCGG TTTTGTCGATCGCCC RPE_4344 4869915 - 4870406 + | hypothetical protein RPE_4345 4871766 - 4870990 - | AraC family transcriptional regulator TERM 4360 4871125 - 4871095 - G 74 -12.4 -3.53012 | overlap 4871079 4871078 4871096 GCTCTGGTCGGCAAA GCCGGTCGCCGCGG CGG CCTCGGCGACGGTC GCGCCGGCGCGGATC RPE_4346 4872162 - 4871788 - | cupin 2 domain-containing protein TERM 4361 4872032 - 4872057 + g 70 -11.1 -3.57144 | gap 1 GTGCTGAACGCGCCG CCGGTGG-CCGC CCC GCGGACCAGCGG TTTCAGGCTGACACC TERM 4362 4872231 - 4872192 - H 85 -14.2 -3.54424 | gap 1, opp_overlap 4872191 4872202 TGCGATCCGGCGAAA CGTCCGCCGCGCCGCACTG TCG CGCCGCGG-GCGGCAGACG GCTTGTAGGATCTTG TERM 4363 4872546 - 4872534 - H 71 -5.5 -4.386 | CAATCCGCGACAAAA GAGCA ATT TGCCC CTCTTGCGCCGAAAG RPE_4347 4872541 - 4872801 + | hypothetical protein RPE_4348 4873150 - 4872944 - | hypothetical protein TERM 4364 4873586 - 4873536 - R 70 -9.8 -3.65046 | gap 3, opp_overlap 4873537, overlap 4873537 CGCTCATCGTAACAA CCTCCAGATTCCGGGTCTGCGCGCC AAGG GGCGCGCAT-CCCGGAA--TGACGG CGTTGTAGCGAGCGT RPE_4349 4874663 - 4873683 - | Mg2+ transporter TERM 4365 4874277 - 4874307 + g 95 -16.8 -3.78934 | opp_overlap 4874264 GAGCACCATCTCGCC GTTGGTGCCCGGCG CCA CGCCGCGCGCCAGC TTGTTCTCCACCAGC RPE_4350 4875001 - 4875687 + | ErfK/YbiS/YcfS/YnhG TERM 4366 4875715 - 4875689 - T 74 -14.4 -2.50816 | overlap 4875688 CTGCGACGCAGTAAT CGCGGTCAGCCG GCT CGGCTGACGGCA TCTGACAACAACCAA TERM 4367 4875737 - 4875768 + T 100 -13.1 -4.56597 | gap 1, opp_overlap 4875727 AACAACCAAATTCGA CGTC-ATGGCCGGG CTTGT CCCGGCTATCGACG TTTTTGGACCCCAGC TERM 4368 4875855 - 4875873 + T 76 -8 -4.33248 | opp_overlap 4875855 CCGGCCCCATCACAA GCGCCGGG GTT CCCCGTGC TTTCTTGTCGCCTTG RPE_4351 4876571 - 4875849 - | extensin family protein TERM 4369 4878095 - 4878118 + G 78 -10.4 -4.08767 | gap 1, opp_overlap 4878074 CGACGACGCCGGCAA GTCGTTGCCGT GGG ACGGCAA-GAC TTTTGGGCGGCTCAA RPE_4352 4876971 - 4878599 + | putative acyl-CoA synthetase RPE_4353 4879093 - 4878737 - | hypothetical protein TERM 4370 4880123 - 4880109 - g 74 -12.8 -3.61398 | GCCGGCCGCGAAGAA GCCGGC CGC GCCGGC CAAGGACGCGGCGAA RPE_4354 4879306 - 4880151 + | hypothetical protein RPE_4355 4881204 - 4880272 - | beta-lactamase domain-containing protein TERM 4371 4881253 - 4881295 + r 73 -11.5 -3.64822 | gap 2, overlap 4881233 GATGGGTTGAGCGCA GCGAAACCCATCGGCGTTCTG GCG CGGGAT--CGATGGGTTTCGC TTTCGCTCAACCCAT RPE_4356 4882702 - 4881488 - | acyl-CoA dehydrogenase domain-containing protein TERM 4372 4882280 - 4882294 + g 72 -11.4 -3.55815 | opp_overlap 4882271 4882269, overlap 4882268 GAAACAGCCGACCCA CTCGCC GGA GGCGAG TTTCGGCAGGTATTT RPE_4357 4883854 - 4882778 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase RPE_4358 4884302 - 4883943 - | alkylhydroperoxidase TERM 4373 4884358 - 4884327 - R 100 -14.4 -5.37865 | overlap 4884328 CTAACAATGAAAAAA GCTCCCGGGGACGA GGGG CCATCCCCGGGAGA AGGGTATATGGGAGG TERM 4374 4884357 - 4884328 - R 100 -17.9 -3.81092 | overlap 4884327 TAACAATGAAAAAAG CTCCCGGGGACGA GGGG CCATCCCCGGGAG AAGGGTATATGGGAG RPE_4359 4884574 - 4884383 - | hypothetical protein RPE_4360 4885454 - 4884705 - | Crp/FNR family transcriptional regulator TERM 4375 4885773 - 4885798 + G 93 -10.4 -4.57516 | overlap 4885774 TCCTGGAAAGTCCCG CCATCCGCCC AGCCCC GGGCGGATGA TTTTGGTTTCGATCT TERM 4376 4885774 - 4885797 + G 75 -13.9 -3.33425 | overlap 4885773 CCTGGAAAGTCCCGC CATCCGCCC AGCCCC GGGCGGATG ATTTTGGTTTCGATC TERM 4377 4886137 - 4886113 - g 72 -8.5 -4.07568 | opp_overlap 4886128, overlap 4886114 CCGCCGGGGCCAAAA CCGGCGACC GGGTGGT GGTCGGCGG CGTCGGCGGCCGCGA TERM 4378 4886618 - 4886651 + G 72 -11.6 -3.60296 | CCCCGCTGGCGTCGA CGTGCCGCTGACGC TGTACC GCGGCGGCGACACG TTTGACGTGGAACTG RPE_4361 4885743 - 4886714 + | PDZ/DHR/GLGF domain-containing protein TERM 4379 4886753 - 4886699 - T 78 -6.4 -4.58283 | gap 1, opp_overlap 4886748, overlap 4886701 CAAGTTTTTGAAAAA GCCGCGGATGCATTGAG-CCGGC TGACGGCTAC GCCGGACTCGATGCATCTGGCGC GGCGGCTCGCACCGG RPE_4362 4887035 - 4886727 - | XRE family plasmid maintenance system antidote protein TERM 4380 4887748 - 4887734 - g 72 -8.6 -4.07687 | ACCGGCGCGCGAAAA GTCGAT CTG ATCGAC GCCATGGTGTCCGCC TERM 4381 4888072 - 4888051 - g 78 -14.5 -3.28712 | CGCGGCGTTCGAGAA CGCGATGTC GCTC GACATCGCG ATGGGCGGCTCGACC RPE_4363 4887251 - 4889095 + | dihydroxy-acid dehydratase TERM 4382 4889416 - 4889461 + T 74 -13.3 -3.34398 | gap 1, overlap 4889415 4889434 GGTGAAGGCCGCGTG GAGGGGTGAGGTGAAGATGCAG GCG CCGC-TTTTCACCTCTCCCCGC TCTTTCGCGGGGAGA TERM 4383 4889712 - 4889757 + T 74 -13.3 -3.34398 | gap 1, overlap 4889710 4889730 GGTGAAGGCGGCGTC GAGGGGAGAGGCGAAGATGCAG GCG CCGC-TTTTCACCTCTCCCCGC TCTTTCGCGGGGAGA RPE_4364 4890881 - 4890315 - | hypothetical protein RPE_4365 4891366 - 4890968 - | ModE family transcriptional regulator RPE_4366 4892289 - 4891426 - | modD protein RPE_4367 4892557 - 4893174 + | hypothetical protein TERM 4384 4893687 - 4893641 - g 73 -10.6 -3.68073 | opp_overlap 4893646 CAGGCCAGCGAAGAA CGGCACCGTGGTGCGCGCCGGC CAG ACCGACGAGCCCGACGGCATCG CGCGGGCGCTCGGCG TERM 4385 4893693 - 4893719 + G 75 -13.6 -3.37761 | overlap 4893646 4893692 GACGGCATCGCGCGG GCGCTCGGCGGC TTT GGCGCCGAACGC TTCGTCTATTCCGAT RPE_4368 4893171 - 4894043 + | hypothetical protein TERM 4386 4894098 - 4894083 - g 72 -6.8 -4.2558 | gap 1, overlap 4894084 GATCTTCTACGAAAA GCCCGGC TGC GCCGG-C AATGCGCGGCAGAAA RPE_4369 4894057 - 4894494 + | nitrogenase-associated protein TERM 4387 4895345 - 4895313 - g 70 -6.2 -4.20136 | gap 1, overlap 4895314 AGGTGGAAAAGCAAA CCGGCG-GCGGCA TCCGGGTG CGCCGCGCGCCGC CCACCCCGCACGGCA RPE_4370 4894616 - 4895377 + | hypothetical protein RPE_4371 4897114 - 4895441 - | hypothetical protein TERM 4388 4895981 - 4895963 - G 76 -8.8 -4.2828 | opp_overlap 4895963 CGTCATCCAGGAAAA CAGCACGA TCG TCGCGCCG TCCTTGGCGTCCATC RPE_4372 4898412 - 4897600 - | OmpA/MotB domain-containing protein RPE_4373 4900403 - 4898757 - | hypothetical protein TERM 4389 4900027 - 4900004 - G 89 -8.2 -5.00616 | gap 1 TGGTGTCGGAAAAAA TCGCGA-GCTC CAT GAACATCGCGA TCACCCAGGCAAATC TERM 4390 4900081 - 4900131 + g 73 -13.4 -3.28791 | gap 1, opp_overlap 4900089, overlap 4900082 4900083 4900089 CCGATCCGCAGGAAT CG-CGACAACGAGGTCCTGACCT CTTCAT GGGTCTGGACGTCGTTGTCGATG TTCTCGGAAGCGCCT TERM 4391 4900082 - 4900129 + g 76 -14.9 -3.21276 | opp_overlap 4900089, overlap 4900081 4900083 4900089 CGATCCGCAGGAATC GCGACAACGAGGTCCTGACCT CTTCAT GGGTCTGGACGTCGTTGTCGA TGTTCTCGGAAGCGC TERM 4392 4900083 - 4900128 + g 87 -18.4 -2.52623 | opp_overlap 4900089, overlap 4900082 4900081 4900089 GATCCGCAGGAATCG CGACAACGAGGTCCTGACCT CTTCAT GGGTCTGGACGTCGTTGTCG ATGTTCTCGGAAGCG RPE_4374 4903700 - 4900665 - | hypothetical protein RPE_4375 4905855 - 4903714 - | hypothetical protein RPE_4376 4909880 - 4905837 - | ATPase-like protein TERM 4393 4909181 - 4909209 + g 72 -7.3 -4.18018 | TTCGGAATTCGCCGA CGCCAGCGTGGGG CGA TCCAACTTTGGCG TTTTCCGTGGCGGGC RPE_4377 4910113 - 4910352 + | hypothetical protein RPE_4378 4910598 - 4910834 + | hypothetical protein RPE_4379 4910851 - 4911087 + | hypothetical protein TERM 4394 4911497 - 4911481 - g 86 -6.5 -5.00616 | overlap 4911483 CCGCCGCGCAAAAAA TCGGCCG GTT CGACCAA AACGCACTGCGGCTG RPE_4380 4911249 - 4912232 + | Sua5/YciO/YrdC/YwlC TERM 4395 4913551 - 4913572 + G 72 -11.5 -3.53811 | opp_overlap 4913546 CCGCCGAACACGGCA TCGGCGCGC TGAA GCGCGACGA TTTGCCGAGCGTGAA RPE_4381 4912260 - 4913672 + | FAD linked oxidase domain-containing protein RPE_4382 4914948 - 4913710 - | hypothetical protein TERM 4396 4913916 - 4913926 + g 72 -8.2 -4.09685 | opp_overlap 4913915 CCTGGATTGTAAACT CGCC GTC GGCG TTTTCCAACGTAGCG TERM 4397 4914960 - 4915013 + r 100 -28.1 -4.09108 | gap 1, opp_overlap 4914964, overlap 4914964 CCATGTTTACACCTA GAAAGCCTATGGACTAAATTTAG-TC CAA GAGCTAAATTTAGTCCATAGGCTTTC TTTGTATAAATTGGA TERM 4398 4915009 - 4914964 - R 100 -23.1 -3.95073 | gap 1, opp_overlap 4914960 4914964 GTTTACACCTAGAAA GCCTATGGACTAAATTTAG-TC CAA GAGCTAAATTTAGTCCATAGGC TTTCTTTGTATAAAT TERM 4399 4914964 - 4915009 + r 100 -23.1 -4.63044 | gap 1, opp_overlap 4914964, overlap 4914960 GTTTACACCTAGAAA GCCTATGGACTAAATTTAG-TC CAA GAGCTAAATTTAGTCCATAGGC TTTCTTTGTATAAAT RPE_4383 4915827 - 4915051 - | hypothetical protein TERM 4400 4915517 - 4915490 - G 83 -3.2 -5.1675 | gap 1, opp_overlap 4915500 4915501 GGATGGATGAAAAAA GGCTGCTTG-CGG GCG CCGGCGCGCTGCC ATTCATAGTAACCGT TERM 4401 4915912 - 4915884 - H 71 -6 -4.28254 | GGTGAAGAGCGAAAA TGGAGCGTGATG TCGAC CATGACCCTCCA AGCGGCGCCCTCTGC RPE_4384 4915893 - 4916405 + | hypothetical protein RPE_4385 4916410 - 4916844 + | NUDIX hydrolase RPE_4386 4916919 - 4917296 + | hypothetical protein RPE_4387 4917457 - 4917720 + | hypothetical protein RPE_4388 4919194 - 4917860 - | transposase, IS4 family protein RPE_4389 4920756 - 4919422 - | dihydroorotase TERM 4402 4919792 - 4919815 + g 78 -5.9 -4.63932 | CCGGTCATGCCCGAG GGCGACGCC GGATAG GGCTTTGCC TTTTCTTCGAGCGTA TERM 4403 4920602 - 4920566 - G 75 -9.5 -4.07568 | gap 1 CCGGGCTCGCGAAAA TGCACCTGGCTGTCGA TCACGC CCGGCAGC-AGGTGCA GCCCGGTGCAGTCGA TERM 4404 4921091 - 4921112 + G 81 -5.1 -4.7373 | gap 1, overlap 4921090 4921089 CCTGCTGACCGAATT GCTCGCCG AGGACGG CGGCG-GC TTTTTGATCGACTGC TERM 4405 4921357 - 4921336 - g 75 -9.3 -4.07687 | overlap 4921337 AGCTGGCGGCCAAAA CCGCCGCCG CGAT CGGCGCCGA ATGGGTCGACGCCTC TERM 4406 4921713 - 4921685 - g 82 -16 -3.35679 | opp_overlap 4921685 GGTGCGGATCGACAA GCTCGCCGACGC GGTCG ACGCCGGCGAGC GGCTGCATGTCGGCG RPE_4390 4920912 - 4921793 + | glycine cleavage T protein (aminomethyl transferase) TERM 4407 4922237 - 4922277 + G 75 -11.8 -3.67976 | gap 1, opp_overlap 4922214 4922211 GTGCCGGCCTCGACG CCGCTGTCGGCGACGATCT CCAA GGAGC-TCGCCGGCCGCGG TTTCAAATTCGTCGG TERM 4408 4922317 - 4922356 + G 80 -15.8 -3.28712 | gap 1 CGTCTACGCCTTCAT GCAGGCGACCGGGATGGTC AAT GATCA-CCTGGTCGACTGC TTCTGCCACGCCCAA TERM 4409 4922415 - 4922389 - g 79 -12.9 -3.75024 | CGGCACGATGAAGAA GCCGGCGCGGC GCAAG ACGGCGCCGGC GCGTGCCACAAGTTT RPE_4391 4921790 - 4922443 + | DNA-3-methyladenine glycosylase I RPE_4392 4922604 - 4922434 - | hypothetical protein TERM 4410 4923378 - 4923365 - g 75 -9.5 -4.14392 | opp_overlap 4923345 CGGCAAGGCCGAAAA GCGCC TGCT GGCGC GGTTTGAGGCGCTGC RPE_4393 4922787 - 4923401 + | metal dependent phosphohydrolase RPE_4394 4923479 - 4923985 + | hypothetical protein TERM 4411 4924074 - 4924050 - g 73 -10.7 -3.68988 | CGCGATCGAAGACAA CGAGCCGATGA TCC TCACCGCCTCG GGCGGCGACGGCGAC TERM 4412 4924639 - 4924619 - g 72 -8.2 -4.07568 | opp_overlap 4924623 4924624, overlap 4924620 4924622 CGCTGGCGCGGAAAA CCACGCCG GCGCT CGGCGTGC CGATGCGGTTCGACC RPE_4395 4923982 - 4924959 + | hypothetical protein RPE_4396 4925039 - 4925563 + | hypothetical protein TERM 4413 4926358 - 4926393 + G 77 -13.2 -3.53761 | GCCGGACGGATCGTG GTGATCGGCGCCACCG TGAC CGGCGGCGGCGATAAC TTTCCGACGCCGTTC TERM 4414 4927387 - 4927442 + G 77 -13.3 -3.53012 | overlap 4927388 4927390 CGCAGCCACACGCTG GCGGTGTGGCTCTGGCGCGATC-GGCC GGCC GGCGAGATCGCGCCAG-GCCGTGCTGG TTTGAAGAGCGAGAA TERM 4415 4927388 - 4927441 + G 80 -16.8 -2.71712 | overlap 4927387 4927390 GCAGCCACACGCTGG CGGTGTGGCTCTGGCGCGATC-GGCC GGCC GGCGAGATCGCGCCAG-GCCGTGCTG GTTTGAAGAGCGAGA TERM 4416 4927390 - 4927439 + G 76 -15.8 -2.90496 | overlap 4927388 4927387 AGCCACACGCTGGCG GTGTGGCTCTGGCGCGATC-GGCC GGCC GGCGAGATCGCGCCAG-GCCGTGC TGGTTTGAAGAGCGA RPE_4397 4925569 - 4927464 + | adenylate/guanylate cyclase RPE_4398 4928045 - 4927461 - | hypothetical protein TERM 4417 4928077 - 4928092 + r 74 -4.6 -4.58663 | opp_overlap 4928086 4928087, overlap 4928078 4928088 CTGAACGCGGCGACC GCGGGA GAAC TCCCGA TTTTTACCGGGTACT RPE_4399 4929144 - 4928164 - | alcohol dehydrogenase TERM 4418 4928415 - 4928378 - G 70 -6.1 -4.19735 | gap 1, opp_overlap 4928402 4928405, overlap 4928379 CCGCGTAAAATGAAA GGCGCCACCGAGCTCGGA AGG TCCATGC-CGGCGGCGAG ACCGCAGGCCGCGAC TERM 4419 4928699 - 4928646 - G 73 -13.2 -3.21924 | gap 2, overlap 4928644 CGAGCTTCGACAATA GCGCGATCGCCACCGATCCGACGCCG CCGG CGGCGCCGG-T-GACAACGATCGGGC CGTCCTGCGGGGTCA RPE_4400 4929515 - 4930627 + | quinolinate synthetase TERM 4420 4930648 - 4930624 - f 81 -12.9 -3.68936 | GATCAACCTGAAGAA TTGATCGCGGA TAT TCCGCGCTCAA GGGCCATTTCGGCCG TERM 4421 4930709 - 4930762 + G 100 -22.9 -3.30124 | opp_overlap 4930696, overlap 4930711 ATGCCTGAACTCGAT CTGGCCGGCGGGGCCGCCGACATCG TCAT CGTCGGCGGCGGCCTCGCCGGGCTG TTCTGCGCGCTGAAG TERM 4422 4930711 - 4930760 + G 100 -24.1 -3.21924 | opp_overlap 4930696, overlap 4930709 GCCTGAACTCGATCT GGCCGGCGGGGCCGCCGACATCG TCAT CGTCGGCGGCGGCCTCGCCGGGC TGTTCTGCGCGCTGA TERM 4423 4931144 - 4931166 + G 77 -7.7 -4.36914 | GCGGTGCGCGCCACG CCGTCGATC CGGGT GATCGAAGG TTTTGTGGCCGAAGC TERM 4424 4931786 - 4931755 - g 71 -12.2 -3.25823 | gap 1, opp_overlap 4931747 4931746 CGCCGTGGACACCAA CGG-CCGCAGCTCGC TGC GCGGGCTGTGGGCCG CAGGCGAAGTTTCCT RPE_4401 4930685 - 4932292 + | L-aspartate oxidase RPE_4402 4932308 - 4933189 + | nicotinate-nucleotide pyrophosphorylase TERM 4425 4933327 - 4933275 - f 88 -14.8 -3.76224 | gap 1, opp_overlap 4933273 4933272, overlap 4933240 4933241 CCCGCAGTTACCAAA TCGAGATTCCGGGTTCGCACCCCGC CTAA GCGGCGCGCGC-CCCGGAATGACGA ACGTTGTGATGCTGA RPE_4403 4933504 - 4934166 + | hypothetical protein TERM 4426 4934262 - 4934205 - T 86 -15.2 -3.55622 | gap 3, opp_overlap 4934240, overlap 4934178 4934206 4934240 GCGAACGCGGCGAAA GCCGTGGGCGAACCCGGAATCTCGCAGTT ACC AAAT-CGAGATTCCGGGTTCG--CACGCC GCATTCGCGGCGCAA TERM 4427 4934263 - 4934206 - T 87 -19.3 -2.73159 | gap 1, opp_overlap 4934240, overlap 4934178 4934205 4934240 CGAACGCGGCGAAAG CCGTGGGCGAACCCGGAATCTCGCAGTT ACC AAAT-CGAGATTCCGGGTTCGCACGCCG CATTCGCGGCGCAAG TERM 4428 4934292 - 4934240 - T 76 -11.2 -3.76224 | gap 1, opp_overlap 4934240, overlap 4934205 4934206 CTCGCAGTTACCAAA TCGAGATTCCGGGTTCGCACGCCGC ATTC GCGGCGCAAGC-CCCGGAATGACGA TCATTGTGTGGAAGC RPE_4404 4935809 - 4934346 - | cell wall hydrolase, SleB TERM 4429 4935755 - 4935713 - G 74 -12.8 -3.57615 | gap 2, opp_overlap 4935708, overlap 4935715 CGAACACGCCGCAAA GACCGAGACCGAAGGACGCG AACCG CGCGCCCTTCGG-C-CGGTT ACGCTTCACTGACAT TERM 4430 4935753 - 4935715 - G 82 -15.4 -3.36341 | gap 2, opp_overlap 4935708, overlap 4935713 AACACGCCGCAAAGA CCGAGACCGAAGGACGCG AACCG CGCGCCCTTCGG-C-CGG TTACGCTTCACTGAC TERM 4431 4936093 - 4936062 - R 91 -16 -3.55191 | opp_overlap 4936062 4936067, overlap 4936067 GCAATGCCAGAAATA CAAAATGGCCGGGA TTGC TCCCGGCCATTTTC TGATCTGCAACAAAC TERM 4432 4936062 - 4936093 + r 80 -16 -2.62184 | opp_overlap 4936062 4936067, overlap 4936067 GCAATGCCAGAAATA CAAAATGGCCGGGA TTGC TCCCGGCCATTTTC TGATCTGCAACAAAC TERM 4433 4936088 - 4936067 - R 100 -15.9 -4.84918 | opp_overlap 4936062 4936067, overlap 4936062 GCCAGAAATACAAAA TGGCCGGGA TTGC TCCCGGCCA TTTTCTGATCTGCAA TERM 4434 4936067 - 4936088 + r 100 -15.9 -4.50976 | opp_overlap 4936067 4936062, overlap 4936062 GCCAGAAATACAAAA TGGCCGGGA TTGC TCCCGGCCA TTTTCTGATCTGCAA TERM 4435 4936287 - 4936235 - R 74 -12.1 -3.53091 | gap 3 ACGCCTGGCTCGAAA TCGCCTTGCCGAGCGCG-GCCTGCGC CGCG GCG-AGACGCGCGATCGGC-ACGCGA TAGGGCGAGCACGAC RPE_4405 4939241 - 4936218 - | pyruvate phosphate dikinase RPE_4406 4939478 - 4939335 - | hypothetical protein TERM 4436 4939590 - 4939631 + H 76 -8.5 -4.16921 | gap 1 AATTTGGCCCCAGTT CGGCAGCGGCGGGCCTGGCG CGG TGGC-GACCAGCCGCTGCAG TTTTCGAGCTTCTTC RPE_4407 4939780 - 4940124 + | hypothetical protein TERM 4437 4940160 - 4940170 + T 81 -2.4 -5.15634 | ATTGATCGGTACGCC CCGC AGA GCAG TTTTTTCGTCCGCTG RPE_4408 4941286 - 4940189 - | hypothetical protein TERM 4438 4941180 - 4941208 + g 76 -16 -2.87132 | CTGCCGAGCACGTCG TCGCTCGCCGCC AGCAC GCCGGCGAGCGA TGTCTGCGCCACCGC TERM 4439 4941448 - 4941410 - R 70 -11.6 -3.12351 | TTCTGCGACATCGAA CTCTTTACCTCTCCCCGC TGC GCGGGGAGAGGTCGACCG GCGCAGCGCAGCGAA glyS 4943841 - 4941607 - | glycyl-tRNA synthetase subunit beta TERM 4440 4942740 - 4942759 + g 70 -6.4 -4.25104 | overlap 4942728 CGATCCGGGCGATGC GCTCGG CTTGCGTC CCGAGC TTTTCGTGGAACACG RPE_4410 4944275 - 4943841 - | hypothetical protein glyQ 4945268 - 4944306 - | glycyl-tRNA synthetase subunit alpha TERM 4441 4944515 - 4944525 + g 81 -8.2 -4.49756 | opp_overlap 4944514, overlap 4944514 GCAGCGCCATCAGAT GCGC CTC GCGC TTTTCGTCTTTCCAG TERM 4442 4945501 - 4945480 - R 84 -11.5 -4.18018 | overlap 4945438 4945436 GGTGCCGAGCCAAAA CGCCGCTTC CCGT GCAGCGGCG CTGATGATGCGACTC TERM 4443 4945698 - 4945660 - R 91 -17.4 -3.28712 | overlap 4945612 TGCCGCTCCGCAGAA CCGGGACCGTAACGAAGG CAA CATCCGTAACGGCCCCGG ATCAGCAGCGCACCA RPE_4412 4945967 - 4945773 - | hypothetical protein RPE_4413 4946969 - 4946067 - | peptidase S49 RPE_4414 4947956 - 4947210 - | methyltransferase small RPE_4415 4948194 - 4947967 - | hypothetical protein RPE_4416 4948381 - 4949406 + | farnesyltranstransferase TERM 4444 4949458 - 4949489 + T 93 -18 -3.31144 | overlap 4949464 GCCATTTCGATCCAT CGAGACGCGCGCCC CGTA GGGCGCGCTTTTCG TTCTGACGCTGCGCG RPE_4417 4949781 - 4949437 - | hypothetical protein TERM 4445 4949464 - 4949483 + g 100 -16.4 -4.48987 | overlap 4949458 TCGATCCATCGAGAC GCGCGCCC CGTA GGGCGCGC TTTTCGTTCTGACGC TERM 4446 4949629 - 4949675 + g 72 -14.3 -3.05384 | gap 1 CGACACCGACCGGCC CGGCCGCGCGCGCGACTGGTGC GCCG GCGCTACCCGCG-GCGCAGCCG TTCGATCCGCAGGCC TERM 4447 4950130 - 4950072 - g 100 -18.7 -4.12902 | gap 1, opp_overlap 4950111, overlap 4950063 4950073 CAATCACCGTCAAAA GTGCCGGCGCGCCCATCCGCCGACGACG CAAG CGTCGTCGGCCCG-AGGCGCGCCGGCTT GGGCGCTCGGTTCAG TERM 4448 4950129 - 4950073 - g 100 -22.2 -3.07259 | gap 1, opp_overlap 4950111, overlap 4950063 4950072 AATCACCGTCAAAAG TGCCGGCGCGCCCATCCGCCGACGACG CAAG CGTCGTCGGCCCG-AGGCGCGCCGGCT TGGGCGCTCGGTTCA RPE_4418 4949810 - 4950202 + | hypothetical protein RPE_4419 4951095 - 4950199 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 4449 4950466 - 4950517 + g 70 -2.2 -4.65895 | gap 3 CGGCGCGTCGCGATC CGGCCAGGCCGGCG-CGGC--CACC ACGTC GGTGACGCCGACGTTCAACTGGCCG TTTTTCAATCCAAGC RPE_4420 4952882 - 4951101 - | TPR repeat-containing protein TERM 4450 4951516 - 4951542 + g 81 -12.3 -3.7732 | gap 1 TAGTTCAGCACATGC GGCTGCTCGGGC TGCA GCTCGAGC-GCC TTCTTCATGTCGACC RPE_4421 4954783 - 4953125 - | electron-transferring-flavoprotein dehydrogenase TERM 4451 4953822 - 4953792 - G 77 -12.5 -3.73775 | gap 1 GGCACGTTGACGAAA CCCGCGGCGCAGCC GATC AGC-GCGCCGCCGG GGAAACTCAGCCGCG TERM 4452 4954993 - 4954975 - H 71 -8.8 -3.92659 | overlap 4954969 TCCCGAAAAGCGAAA GCCGCGCA GGT TGCGCAAC ATCGCAATTGCAGGA RPE_4422 4955109 - 4955930 + | phage SPO1 DNA polymerase-related protein RPE_4423 4957447 - 4955936 - | hypothetical protein TERM 4453 4956075 - 4956124 + g 71 -3.4 -4.58395 | gap 1, overlap 4956040 4956076 4956077 GCTTCCGGCGGCTGC CCCATCG-TGTCGGCGGCGCG CCACAGCAC CACGCCGCCGACATCGGCGAA TTTTTGCGGCGTCAG RPE_4424 4958411 - 4957575 - | ribonuclease H TERM 4454 4958440 - 4958389 - G 73 -13.8 -3.21276 | gap 3, opp_overlap 4958397, overlap 4958387 4958390 4958433 GGGGGTTCCAGAACA GTGTCCCGG-GC-GCGGTGCGGCAT TCTTC ATGCCGCTCCGCAGAACCGGGAC-C GTCACGAAGGCTGCG TERM 4455 4958487 - 4958433 - R 82 -14.3 -3.28712 | gap 1, opp_overlap 4958445, overlap 4958389 4958390 4958387 TGCCGCTCCGCAGAA CCGGGACCGTCACG-AAGGCTGCGTT CACG AAGGCTGCGTTGCGTTACGGCCCCGG ATCAGCAGCGCATCA RPE_4425 4959763 - 4958555 - | radical SAM domain-containing protein TERM 4456 4959702 - 4959734 + g 72 -14.9 -2.70932 | gap 1, opp_overlap 4959692 AGCGAGGGGGGCGCA CCCGCCGGT-TCGG AGGGCG CCGGGACCGGCGGG TGCTTGAGGGCAGCG RPE_4426 4959942 - 4960502 + | glycosyl transferase family protein TERM 4457 4960862 - 4960840 - g 78 -10.5 -4.07568 | GGCTTGCTGGCAAAA CGGCCGTCG CCGAC CGACGCCCG GCAACAGCATCTGGC RPE_4427 4960591 - 4961541 + | MarR family transcriptional regulator RPE_4428 4961836 - 4961594 - | hypothetical protein TERM 4458 4961715 - 4961765 + g 78 -14 -3.53811 | gap 2, opp_overlap 4961758, overlap 4961716 4961747 CGATGAATTTCTCTG TGTCCCGG-GC-GCGGTGCGGCAT TCTTC ATGCCGCTCCGCAGAACCGGGACC TTTGCGGACGCTGCG TERM 4459 4961716 - 4961764 + g 80 -17.5 -2.72144 | gap 2, opp_overlap 4961758, overlap 4961715 4961747 GATGAATTTCTCTGT GTCCCGG-GC-GCGGTGCGGCAT TCTTC ATGCCGCTCCGCAGAACCGGGAC CTTTGCGGACGCTGC RPE_4429 4962416 - 4961868 - | molybdenum cofactor biosynthesis protein B RPE_4430 4963504 - 4962578 - | protein of unknown function, zinc metallopeptidase putative TERM 4460 4964752 - 4964720 - g 75 -12 -3.65046 | gap 1, opp_overlap 4964719 CGTGGATTCCAAGAA GCGCCA-CGGCGC CTTGGTGC GCGCCGACGGCGC CATCATGCTCGGCGA RPE_4431 4963779 - 4964918 + | DNA methylase N-4/N-6 domain-containing protein TERM 4461 4965342 - 4965315 - g 84 -9.1 -4.4648 | overlap 4965301 AGGTCGAGGAGAAAA TCCGCGACCTG ATCAAG CAGGCCGCCGA AAAGCAGATGGAGAA RPE_4432 4965059 - 4965397 + | hypothetical protein RPE_4433 4966534 - 4965434 - | A/G-specific adenine glycosylase TERM 4462 4965686 - 4965742 + g 81 -12.8 -3.86524 | gap 1 TCGCGCGACGCGGTC GTCCTGCGCGGCCAGCCAGTCCGAGGT CGGC ACCTCGGTCATGCCG-CCGAGCAGGCC TTTGTCGGCGCGTGT RPE_4434 4966616 - 4966936 + | XRE family plasmid maintenance system antidote protein TERM 4463 4966945 - 4966913 - f 73 -11.1 -3.61654 | overlap 4966887 GAGACCGATCTCAAA GCCATCCGCCCCCGC GCC GCGTGAGCGGTTCGC CCCCGCCCCCGCCAA TERM 4464 4967305 - 4967291 - g 82 -11.4 -4.08064 | opp_overlap 4967292 AACGCGGTGGGAAAA CTGGCG CTG CGCCAG GCGCCATTGTCGCGC TERM 4465 4967369 - 4967333 - g 81 -8.6 -4.46212 | gap 2, overlap 4967335 CGCCGCAGCACAAAA CCGCCCCG--CGCGCCCG ACC CGGCCGCGATCGAGGCCG TGGCCAAACAGCTCG RPE_4435 4966976 - 4967452 + | hypothetical protein RPE_4436 4967554 - 4968225 + | twin-arginine translocation pathway signal TERM 4466 4968278 - 4968243 - T 93 -16.2 -3.72576 | opp_overlap 4968276, overlap 4968244 GCCGCCCGCACTAAA CCGTCATGCTGAGGCG CTCG CTCCTCAGCATGACGC CGTGCAATTGATGAG TERM 4467 4968277 - 4968244 - T 93 -19.7 -2.83403 | opp_overlap 4968276, overlap 4968243 CCGCCCGCACTAAAC CGTCATGCTGAGGCG CTCG CTCCTCAGCATGACG CCGTGCAATTGATGA TERM 4468 4968276 - 4968300 + T 76 -10 -3.86897 | opp_overlap 4968244 4968243 CGCTCCTCAGCATGA CGCCGTGC AATTGATGA GCACGGCG TTTCTCCAACCTGAG RPE_4437 4969158 - 4968490 - | hypothetical protein TERM 4469 4968704 - 4968687 - G 78 -9.8 -4.09685 | opp_overlap 4968696 4968702 GGCCATGGGCGAAAA GCGGCG GCATCT CGCCGC GCAAGATATGCTCGT TERM 4470 4969195 - 4969161 - R 74 -12.8 -3.30124 | opp_overlap 4969171, overlap 4969162 GCGTACGGGGCATAA TGCGGGATCAGGCGAC GAT GCCGCCTGATTCCACC AAATCGCGCCGCGAT TERM 4471 4969194 - 4969162 - R 80 -16.3 -2.57931 | opp_overlap 4969171, overlap 4969161 CGTACGGGGCATAAT GCGGGATCAGGCGAC GAT GCCGCCTGATTCCAC CAAATCGCGCCGCGA RPE_4438 4970033 - 4969215 - | hypothetical protein RPE_4439 4970411 - 4970112 - | hypothetical protein TERM 4472 4970452 - 4970401 - G 77 -12.8 -3.72576 | gap 1, overlap 4970386 4970385 4970402 CGGGCTTTCAGGAAA CCCGCCCCCACGGCAGCCGCCGGCG CGG CGC-AACGGCCGGCGCGGGTTCGGA CTCCGGCTCGAGCGG TERM 4473 4970451 - 4970402 - G 71 -14.1 -2.83403 | gap 1, overlap 4970386 4970385 4970401 GGGCTTTCAGGAAAC CCGCCCCCACGGCAGCCGCCGGCG CGG CGC-AACGGCCGGCGCGGGTTCGG ACTCCGGCTCGAGCG RPE_4440 4971505 - 4970393 - | peptidase M48, Ste24p TERM 4474 4970955 - 4970943 - G 87 -6.9 -5.01732 | AATTCGCCGAAAAAA CCGAC CAC GCCGG CGATGATCACCGCCA RPE_4441 4972298 - 4971741 - | LemA family protein TERM 4475 4971812 - 4971801 - G 77 -5.8 -4.70659 | opp_overlap 4971801 4971804 4971805 GCCGAGATCGAAAAA CTGC ATCG GCAG GAAGCCGAGTGGTTT TERM 4476 4971840 - 4971864 + g 77 -12.2 -3.71284 | overlap 4971813 TTTGGCGACCAGCGC CATCGGCATC TGTTC GATGCCGGTG TTGTATTCCTGCACG TERM 4477 4972356 - 4972345 - R 72 -7.2 -4.14243 | CAGCGTAGTCGAAAA CGCG GTCG CGCG GCAGGGGCTGCGGAA RPE_4442 4973449 - 4972457 - | hypothetical protein TERM 4478 4972493 - 4972507 + g 85 -5.6 -5.00616 | overlap 4972494 GGCCTCGATCAGCGC ATCGCC CCA GGCGAG TTTTTTCACCCGCGC TERM 4479 4972533 - 4972582 + g 77 -7.8 -4.3739 | gap 2 CGCGCATAGGCCGCC TTGTCGCGCCGCGGCGTGGTGACG ATGC CGACGCCGC-CCTCGCCGC-ACAA TTTTGTGCGCGCCTG TERM 4480 4973378 - 4973416 + g 77 -13 -3.55444 | CCGCGCCGCCAACTC GCCCCGCGCCACGCCG GTTAGCG CGGCGTCGAGCGCGGC TTTGAGCGATGCGGG RPE_4443 4977170 - 4973706 - | chromosome segregation protein SMC TERM 4481 4973921 - 4973895 - G 78 -15.2 -3.30441 | opp_overlap 4973876 4973886 CAGCAGGTCGCAGAA CCGCTCGACG TTGTGGT CGTCGAGCGG CGCGTCGACTTCGTC TERM 4482 4975584 - 4975596 + g 85 -10.5 -4.29432 | ATCGTCGCCGAGCAC GGCGC CCA GCGCC TTTTCATAACCTTTG TERM 4483 4976640 - 4976694 + g 78 -15.5 -3.15366 | gap 1, overlap 4976655 CAACTCGGCTTCATG GCGCCG-CGCGTGCAGCCCGGCGACG CCGG CGGCGTCTTCCAGCACGCGGCGGCGC TGTTCGGGTTTTGCC TERM 4484 4976655 - 4976702 + g 74 -7.7 -4.20084 | gap 3, overlap 4976640 4976697 GCGCCGCGCGTGCAG CCCGG-CGACGCCGGCGGCGT-CT TCC AGCACG-CGGCGGCGCTGTTCGGG TTTTGCCTGGATGAT TERM 4485 4977938 - 4977951 + r 75 -3.8 -4.74103 | overlap 4977885 AGTAAGATGCGCCGC CGTC AATTCC GACG TTTTTCCATTGCCCG RPE_4444 4978401 - 4977940 - | hypothetical protein RPE_4445 4979382 - 4978648 - | hypothetical protein TERM 4486 4980306 - 4980291 - R 74 -10.4 -3.69354 | opp_overlap 4980293 CGCGAGAACGGGAAA GTGCGC GCGA GCGCAC GGGCTGTTTGATAAC RPE_4447 4983583 - 4981421 - | anthranilate synthase TERM 4487 4983655 - 4983635 - R 88 -7.5 -4.83269 | ACAGGACATGAAAAA GGCCGCC CTGGGGT GACGGCC TTGACGAATGAACAA RPE_4448 4984463 - 4983816 - | hypothetical protein RPE_4449 4984876 - 4984460 - | endodeoxyribonuclease RusA RPE_4450 4985660 - 4985040 - | methyltransferase type 11 TERM 4488 4985595 - 4985625 + g 70 -10.5 -3.62522 | gap 2 GGCCGCCACATCCTT GATCGGCCGCGCCGC GTA GCGGT-CGG-CGATC TTGTTCCAGAACTTG RPE_4451 4987008 - 4985686 - | hypothetical protein RPE_4452 4987573 - 4987794 + | hypothetical protein RPE_4453 4987969 - 4987751 - | PhnA protein RPE_4454 4988324 - 4988049 - | hypothetical protein TERM 4489 4988476 - 4988459 - R 70 -12.7 -2.9155 | CTCTGGAATACTAGA TCCCCGC TTTC GCGGGGA TGACACACGAGGGAC TERM 4490 4988502 - 4988551 + r 70 -7.2 -4.07124 | gap 3, opp_overlap 4988499 4988502 GGGACATTCAAAGCA CGGATGGACCGGGATCGCGGCAAAT GCA AGTCGCCGCGATC--GG-CCTTCCG TTTCTCTCGCTCGTC TERM 4491 4988681 - 4988695 + r 81 -10 -4.15222 | overlap 4988670 CTCAGTGATGGCTCT TCAGCG CGT CGCTGA TTTCTTCCAGCGCCT RPE_4455 4990577 - 4988667 - | AMP-dependent synthetase and ligase RPE_4456 4991471 - 4990710 - | TPR repeat-containing protein RPE_4457 4992281 - 4991478 - | short-chain dehydrogenase/reductase SDR TERM 4492 4992204 - 4992168 - G 72 -6.7 -4.18018 | gap 3 GCGGTCGACGCAAAA CACCTGC-GCG-CCTTCG CGGG CGAAGGTCACCGC-GGTG GCCTTGCCATTGCCC TERM 4493 4992403 - 4992457 + H 72 -2.7 -4.78572 | gap 2, overlap 4992405 4992406 GCCGCGGCTTCCCGG CGGCGAGTAGCGCACCGACGGCACC ATGGTGC GGGGCC-TCGGTGCACGAA-CGCGG TTTTGTTACTTGCGA RPE_4458 4992542 - 4994374 + | hypothetical protein RPE_4459 4996178 - 4994403 - | radical SAM domain-containing protein RPE_4460 4996713 - 4996339 - | hypothetical protein TERM 4494 4996701 - 4996661 - G 70 -10.3 -3.63305 | opp_overlap 4996683, overlap 4996662 CACACAAGCGTGAAA GCGGCGACCGCCAGCGT CTTCACC ACGCCGGCGGCGGCCAG GCACAGGCTCACGCC RPE_4461 4998833 - 4996710 - | TRAP transporter, 4TM/12TM fusion protein TERM 4495 4997328 - 4997307 - G 70 -2.1 -4.60487 | CACCAGCGCCAAAAA CAGGCTGTG CTCG CCGAGCCCG ATCACCCAGCCGCCG TERM 4496 4998890 - 4998910 + r 71 -14 -2.56596 | opp_overlap 4998884 4998883, overlap 4998885 CAAACTAAGCTGTCA TGCGCGGG CTTGA CCCGCGCA TCCATTGATGAAGAG RPE_4462 4999940 - 4998993 - | TRAP transporter solute receptor TAXI family protein TERM 4497 5000676 - 5000635 - g 72 -11.5 -3.60098 | gap 1, overlap 5000636 ATCGCCTATGCGAAA GCC-AAGCCCGGCGAATTGT TCT ACGGCACGCCGGGCTTAGGC TCGACCGCGCATGTC TERM 4498 5000845 - 5000808 - g 73 -12.7 -3.37796 | gap 1 TCTGACCATCGACAA TC-TGCCGGCGTCGCAGC CGC ACGCCGACGCCGGCACGA TCCGCCCGCTGGCGA TERM 4499 5001059 - 5001099 + G 73 -14 -3.21099 | gap 2, opp_overlap 5001026 5001024 GGCTGCGCAAGCTCG GCGCCG-ATC-CCGCCGGCG GCT CGCCGGAGGAGATGCAGCGC TTCGTGCTGGCCGAG RPE_4463 5000158 - 5001165 + | hypothetical protein TERM 4500 5001750 - 5001762 + G 71 -3.3 -4.65895 | ATCAGGGCGACGATT CCAGT TGC ACCGG TTTTTCGCTCGGCCA RPE_4464 5001647 - 5003467 + | hypothetical protein TERM 4501 5003799 - 5003817 + G 73 -13.8 -3.14211 | opp_overlap 5003799 CAGCGACTGCAGCAA CGCCGGCG AAC TGCCGGCG TTGCTCGGCGCGCAT TERM 4502 5003817 - 5003799 - g 72 -13.1 -3.16881 | opp_overlap 5003799 CAGCGACTGCAGCAA CGCCGGC GAACT GCCGGCG TTGCTCGGCGCGCAT RPE_4465 5003635 - 5004852 + | response regulator receiver modulated diguanylate phosphodiesterase RPE_4466 5005339 - 5004863 - | hypothetical protein RPE_4467 5005599 - 5005910 + | hypothetical protein TERM 4503 5005913 - 5005956 + T 75 -12.4 -3.65902 | overlap 5005898 5005899 5005902 5005914 CGGCCCGGGCTAGAG CCGTGCCTTTGCCCCGTCAT TGCA ATGACGGGGCAAAAGACCGA TTTCAATGCCCTGAC TERM 4504 5005914 - 5005955 + T 78 -15.9 -2.79327 | overlap 5005898 5005899 5005902 5005913 GGCCCGGGCTAGAGC CGTGCCTTTGCCCCGTCAT TGCA ATGACGGGGCAAAAGACCG ATTTCAATGCCCTGA RPE_4468 5008016 - 5005959 - | squalene cyclase RPE_4469 5008044 - 5008412 + | hypothetical protein RPE_4470 5009545 - 5008415 - | hypothetical protein TERM 4505 5009223 - 5009187 - G 70 -6.3 -4.27316 | overlap 5009188 GGCGCGAACTGAAAA TGCTGGGCCGCGGCCTG CAG CAGGTCGGGGACCACCG GAATGTATTCGCGCG TERM 4506 5009341 - 5009377 + g 73 -12.1 -3.42395 | overlap 5009345 CGTCGAGCGTCACCG CCTCGCCGTCGCGGCGC TTG GCGTTGCGGCCGCGGCG TCTTTCGGTGATCGC TERM 4507 5009555 - 5009524 - G 72 -11.5 -3.60627 | gap 1 GCACGCCAGCGGAAA GCCGCACGGCCTCG CCGGC CACGGCCG-GCGGC AGCCCTATCAGCACG TERM 4508 5009596 - 5009621 + r 78 -9.8 -4.07568 | overlap 5009599 CTGCACAAATCAGGC GAATCGGATG AGATCG CATCCGGTTC TTTTAGCAAGCAGGC TERM 4509 5009840 - 5009824 - R 76 -9.3 -4.08945 | opp_overlap 5009794 5009808 ACCACGCCGCGAAAA GCGGCGC GCC GCGCTGC GTCCGGGCACGGTGT RPE_4471 5010490 - 5009864 - | NUDIX hydrolase TERM 4510 5010339 - 5010394 + g 70 -11.2 -3.55444 | gap 3, opp_overlap 5010341, overlap 5010324 5010341 CGGCGCGTCAGCAAG AACGCCGCCGGT-TCGTTCGCGCGTGG CTCGA CCA-GCGCGATCGCCACCG-CGGCGTG TTTCAGCCCTGGCGG TERM 4511 5010341 - 5010392 + g 77 -13.8 -3.35597 | gap 3, opp_overlap 5010341, overlap 5010324 5010339 GCGCGTCAGCAAGAA CGCCGCCGGT-TCGTTCGCGCGTGG CTCGA CCA-GCGCGATCGCCACCG-CGGCG TGTTTCAGCCCTGGC TERM 4512 5010392 - 5010341 - G 83 -14.5 -3.71848 | gap 3, opp_overlap 5010324 5010341 5010339 GCGCGTCAGCAAGAA CGCCGCCGGT-TCGTTCGCGCGTGGC TCG ACCA-GCGCGATCGCCACC-GCGGCG TGTTTCAGCCCTGGC TERM 4513 5010417 - 5010469 + g 86 -17.6 -3.12351 | CCTGGCGGATGGTCC GCCTCGCGGCG-CGCGAACGCCGCAC AGC GGGCGGCGA-CGCGGCGGCGCAAGGC TTCGATCTCGGCAAC RPE_4472 5010557 - 5010985 + | thioesterase superfamily protein RPE_4473 5011146 - 5011394 + | XRE family transcriptional regulator TERM 4514 5012053 - 5012075 + T 78 -10.5 -4.07568 | opp_overlap 5012029, overlap 5012043 GCCTTCGGCCTACCG GCGGCCAAC GCCGA GATGGCCGC TTTTGGCAACACCAC TERM 4515 5012683 - 5012665 - T 75 -11.6 -3.54741 | opp_overlap 5012665 5012675 5012676 CATGATTCGGTGAAA GCCGCAGC GAT GCAGCGGC TGCGTTCGTTGAAGG RPE_4476 5014100 - 5012841 - | HipA domain-containing protein TERM 4516 5013939 - 5013921 - G 85 -8 -4.83615 | opp_overlap 5013937 CAGCCCGGAGAAAAA CGGCCGCA CCA CGCGGTCG CCGTAAGGCGCTTCC TERM 4517 5014111 - 5014080 - G 70 -3.6 -4.56597 | gap 1, overlap 5014084 GGCTGCGCCGAAAAA GACATCGAGCCGGCG ACT CAC-GGCGCGACCTC CCGCCGGCTGCCGGC RPE_4477 5014324 - 5014097 - | XRE family transcriptional regulator TERM 4518 5014266 - 5014299 + g 77 -8.1 -4.3586 | overlap 5014252 TGGGTCAGCCCCTGC GCCTTGCGTTCCTGA CGGA TCAGGAGGCCGAGGC TTTTGCTGTCAGTGA TERM 4519 5014958 - 5014947 - g 75 -4.4 -4.69664 | overlap 5014948 CACATGATGCAAAAA TGCT CAAC AGCA TATGAGCGGCGTGAG RPE_4478 5014584 - 5015096 + | hypothetical protein RPE_4479 5016142 - 5015957 - | zinc-binding protein TERM 4520 5016080 - 5016121 + g 70 -8.5 -3.9392 | overlap 5016046 5016103 GGCCTCGACCGCGGG CTTGCCGCAGATCGGGC AGCGTTTG GCCCGCGCCGCGGCGGG TTGTTTCGGCTCAGC RPE_4480 5016755 - 5016132 - | Maf-like protein TERM 4521 5016286 - 5016253 - G 70 -3.7 -4.4648 | overlap 5016254 5016255 AGTTTCACCACAAAA CTGCCGGCGATGC CCTGCACC GCATAGCCGCCGG CCTTGCCGCGCCATT RPE_4481 5018039 - 5016885 - | hypothetical protein TERM 4522 5017605 - 5017656 + g 71 -12.2 -3.26471 | gap 1, overlap 5017605 5017612 AGGACCGCGACGTTC GG-CGAACGCGTTGGCGCGGCCGAG TAG CTCGCCCGTCCAGACGCTTTCGGCC TTGATCTGCGGATCG TERM 4523 5017612 - 5017648 + g 70 -10.7 -3.62032 | overlap 5017605 5017605 CGACGTTCGGCGAAC GCGTTGGCGCGGCCGAG TAG CTCGCCCGTCCAGACGC TTTCGGCCTTGATCT RPE_4482 5018604 - 5018134 - | protein tyrosine phosphatase RPE_4483 5019154 - 5018663 - | hypothetical protein hisD 5020446 - 5019151 - | histidinol dehydrogenase TERM 4524 5020533 - 5020510 - R 79 -9.6 -4.16016 | TGACGCGGCAACAAA TCGCCGTCAA CCCT TTGAGGGCGA GAGCGGATTATTGCG RPE_4485 5021831 - 5020734 - | transposase, IS4 family protein TERM 4525 5021735 - 5021696 - G 77 -5.7 -4.57569 | gap 2 TCATCCGCGCAAAAA GCG-CCATGT-CGGTGCAA CTGG TCGCCCCGCACAAGGTCGC CATCAGCGCGATGAA TERM 4526 5022254 - 5022232 - R 71 -13.4 -2.6063 | opp_overlap 5022232, overlap 5022229 5022228 CCCATCCACAAGCGA TCGCTGCGCC GCT GGCGGAGCGA TGTCTTGCGGTACGC TERM 4527 5022232 - 5022254 + r 75 -13.4 -3.08813 | opp_overlap 5022232 5022229 5022228 CCCATCCACAAGCGA TCGCTGCGCC GCT GGCGGAGCGA TGTCTTGCGGTACGC TERM 4528 5022902 - 5022888 - R 74 -9.2 -3.8591 | CTCTACAACGAAGAA CGCCCG CAT CAGGCG CTGGGCAACGATACT TERM 4529 5023235 - 5023179 - R 100 -24.8 -3.84451 | gap 2, overlap 5023180 TTGCGCAAAGCCAAA CGAGGCTGTGGA-C-TTGTGGACAACGC TGC GCGTTGCCCACAAGGGCCCACAGCCTCA ACAGCAGACGCCGAA TERM 4530 5023234 - 5023180 - R 100 -26.1 -2.90349 | gap 2, overlap 5023179 TGCGCAAAGCCAAAC GAGGCTGTGGA-C-TTGTGGACAACGC TGC GCGTTGCCCACAAGGGCCCACAGCCTC AACAGCAGACGCCGA RPE_4487 5023790 - 5023347 - | hypothetical protein RPE_4488 5025095 - 5023806 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4531 5024192 - 5024161 - G 72 -8.6 -4.08394 | gap 1, opp_overlap 5024161, overlap 5024162 AGATCGGTCGGAAAA CCGGGGAACGGCGCC GTG GTCACCGT-CACCGG GTTGATCCCGGCGCC RPE_4489 5026082 - 5025399 - | hypothetical protein TERM 4532 5026196 - 5026145 - R 100 -20.3 -3.53444 | gap 3, overlap 5026147 5026155 CCACCTTGCCTGAAA CATGCCCAAA-GCGCGCCG-GGCGGG CAA CCCGCCTCGGCGCCCGTTCGGGCA-G TTACCAACCAACTAA TERM 4533 5026195 - 5026147 - R 100 -24 -3.34517 | gap 2, overlap 5026145 5026155 ACCTTGCCTGAAACA TGCCCAAA-GCGCGCCG-GGCGGG CAA CCCGCCTCGGCGCCCGTTCGGGCA GTTACCAACCAACTA TERM 4534 5026186 - 5026155 - R 100 -19.4 -3.62518 | gap 1, overlap 5026147 5026145 TGAAACATGCCCAAA GCGCGCCG-GGCGGG CAA CCCGCCTCGGCGCCC GTTCGGGCAGTTACC RPE_4490 5027044 - 5026220 - | alpha/beta hydrolase fold TERM 4535 5026566 - 5026556 - G 72 -8.2 -4.1466 | overlap 5026547 ATTGAAGCCGTAAAA CGGC CCG GCCG GCAGGTCGCGATAGA TERM 4536 5027131 - 5027087 - R 100 -17.8 -3.78953 | gap 1, overlap 5027088 ATGGTGATGAGGAAA GCGCGAAGCCGCAACGCCGCG ATGA CGCGGCGT-GCGGCGTAGCGA TCACGAGCGCGTCAG TERM 4537 5027130 - 5027088 - R 100 -21.3 -2.87051 | gap 1, overlap 5027087 TGGTGATGAGGAAAG CGCGAAGCCGCAACGCCGCG ATGA CGCGGCGT-GCGGCGTAGCG ATCACGAGCGCGTCA RPE_4491 5027643 - 5027143 - | hypothetical protein TERM 4538 5027532 - 5027512 - G 73 -9.6 -3.96148 | overlap 5027514 GGTGGTGACGAGAAA CAGCGCGG TCCAG CCGCGCAG CGGGTTCGAGGTCAG TERM 4539 5027530 - 5027514 - G 70 -10.8 -3.57406 | overlap 5027512 TGGTGACGAGAAACA GCGCGG TCCAG CCGCGC AGCGGGTTCGAGGTC RPE_4492 5028728 - 5027808 - | alpha/beta hydrolase fold TERM 4540 5027938 - 5027951 + g 71 -3.1 -4.58395 | GCCTGGGTGATCAGC GTTTC GCCG GAAGC TTTTTCGCCGGTCAG TERM 4541 5028683 - 5028625 - G 70 -10.9 -3.53012 | TTGGCCTCGGCGAAA CGGCTCTGCGGCGCCTGCGCCGA-GGCGG GAG CCGGCATCATCGCCAACGCCGCA-AGCAG CAGCGAAACGACGAT RPE_4493 5029086 - 5028778 - | ethyl tert-butyl ether degradation EthD RPE_4494 5030862 - 5029156 - | cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 4542 5030248 - 5030290 + g 73 -12.5 -3.35679 | CACCAGCGGCAGATC GGACGGCGCCGGCGCGGCG CGGGC CACCAGGTCGGCGGCGTCC TTGTCGGTGGCGGGA RPE_4495 5031163 - 5031609 + | hypothetical protein RPE_4496 5033168 - 5032026 - | LuxR family transcriptional regulator RPE_4497 5034208 - 5033465 - | LuxR family transcriptional regulator RPE_4498 5034901 - 5034401 - | hypothetical protein TERM 4543 5034971 - 5035003 + r 95 -20.5 -3.27923 | CCTCTTACGTTGGTA CGATCCGGCGGCGGC CTC GACGCCGCCGGACCG TTCGTCGTCTTAACG RPE_4499 5037766 - 5035013 - | flagellin RPE_4500 5039493 - 5038372 - | ribosome small subunit-dependent GTPase A TERM 4544 5039158 - 5039128 - G 70 -10.5 -3.71378 | gap 2 CATTTGATACTGAAA GTCGCTGTTCGCCGA TTT CCGGCG--CAGCGAC GTGCGTCGCTCCAGC RPE_4501 5039944 - 5039621 - | CutA1 divalent ion tolerance protein TERM 4545 5040168 - 5040192 + G 72 -11.4 -3.6215 | gap 1 ACCATGCTAGCGACC GCTG-CGCCGG CTGC CCGGCGGCGGC TTTCAGCTGAATTGC RPE_4502 5039987 - 5040202 + | FmdB family regulatory protein RPE_4503 5041702 - 5040221 - | ADP-ribosylation/crystallin J1 TERM 4546 5041049 - 5041013 - G 72 -12.9 -3.12351 | opp_overlap 5041037 GGCCTGCAGATCGAA CGGCCCGCCACCGATCA TGT CGACCAGCGGCGGACAG CTGTCGCGCGCTGTG TERM 4547 5041681 - 5041663 - G 84 -9.5 -4.56597 | CGGGGCCGCTAAAAA CCGCCGC GATCT GCAGCGG ATGTGACGCCGAAGT RPE_4504 5042525 - 5041794 - | hypothetical protein TERM 4548 5042242 - 5042197 - G 70 -11.3 -3.53012 | gap 2, opp_overlap 5042181 GCGTCGGCGGCGAAA TGATCGCAGACCGCCGCGCGA GCCATT TC-CGCGGCAGTCC-CGACCA GATCGGCAAGGGTCA TERM 4549 5042575 - 5042554 - R 93 -17.3 -3.40403 | CCCGCTGGATGATAA GCCTCGCCG ATCG CGGCGAGGC TTCCCCTTAAGCGAG RPE_4505 5043830 - 5042625 - | S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase TERM 4550 5043952 - 5043940 - H 78 -4.7 -4.6856 | CAAACATCGGAAAAA GCGGG AGC CACGC ACAGGATGAGGTGCT TERM 4551 5044139 - 5044127 - g 78 -10.5 -4.07687 | ATCGCCGGCCTAAAA CCCGC GCC GCGGG CCCGCGTGCTCGAAA RPE_4506 5043971 - 5044675 + | methyltransferase type 12 RPE_4507 5044672 - 5044995 + | small multidrug resistance protein RPE_4508 5046060 - 5045017 - | Mg2+ transporter protein, CorA family protein RPE_4509 5046822 - 5046220 - | NUDIX hydrolase TERM 4552 5047284 - 5047302 + G 70 -10.3 -3.63991 | TCTGACCTCCTGGTA CATGGCG ATCTG CGCCATG TTCTTCGCGCTGGTC TERM 4553 5047393 - 5047407 + G 73 -12.8 -3.36991 | overlap 5047391 CTGATCGCCGCGCTC GCCGGC ATC GCCGGC TATTTCGGGCTGGTG RPE_4510 5046976 - 5048217 + | hypothetical protein TERM 4554 5048599 - 5048642 + G 70 -11.6 -3.39895 | gap 1 AGGGCGCCCGGTAGT CCCGCCATTCTCGCCATCGTC TAT GCCGACGGCGGG-GTGGCCGG TTCCTTCATCGCCAA RPE_4511 5048563 - 5049162 + | hypothetical protein RPE_4512 5049403 - 5049197 - | molybdenum-pterin binding RPE_4513 5049647 - 5050201 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen RPE_4514 5050207 - 5050752 + | alkylhydroperoxidase TERM 4555 5050896 - 5050936 + T 78 -11.8 -3.68529 | opp_overlap 5050897 5050900, overlap 5050899 5050903 TCGGTCAACATCAAA ACAACAAGGCTCCTGGCG TCGAT CGCCGGGAGCCTTGATCA TTTCAGTGATAGCCT TERM 4556 5050935 - 5050897 - T 100 -13.1 -4.4261 | opp_overlap 5050896 5050899 5050903, overlap 5050900 CGGTCAACATCAAAA CAACAAGGCTCCTGGCG TCGAT CGCCGGGAGCCTTGATC ATTTCAGTGATAGCC TERM 4557 5050899 - 5050933 + T 90 -17.9 -2.95116 | opp_overlap 5050897 5050900, overlap 5050896 5050903 GTCAACATCAAAACA ACAAGGCTCCTGGCG TCGAT CGCCGGGAGCCTTGA TCATTTCAGTGATAG TERM 4558 5050932 - 5050900 - T 100 -19.2 -4.32583 | opp_overlap 5050899 5050896 5050903, overlap 5050897 TCAACATCAAAACAA CAAGGCTCCTGGCG TCGAT CGCCGGGAGCCTTG ATCATTTCAGTGATA TERM 4559 5050903 - 5050929 + T 91 -17.3 -3.33483 | opp_overlap 5050900 5050897, overlap 5050899 5050896 ACATCAAAACAACAA GGCTCCTGGCG TCGAT CGCCGGGAGCC TTGATCATTTCAGTG RPE_4515 5051274 - 5050978 - | ferredoxin like protein, fixX RPE_4516 5052639 - 5051332 - | electron-transferring-flavoprotein dehydrogenase RPE_4517 5053757 - 5052651 - | electron transfer flavoprotein beta-subunit TERM 4560 5053270 - 5053245 - G 71 -9.7 -3.79678 | gap 1, overlap 5053248 AATGGTGCACAACAA CGA-GCCGCCGA AGG TCGGCCGCGTCG CGGCCAGCGAGCCGT TERM 4561 5053407 - 5053431 + g 71 -12.2 -3.26471 | overlap 5053429 CACTTCCGGCTTGTA GGTGTTGACC ATGTC GGTCAACGCC TTGCTGTAGGGCTCG RPE_4518 5054630 - 5053785 - | electron transfer flavoprotein beta-subunit TERM 4562 5053874 - 5053899 + g 72 -8.2 -4.08767 | gap 1 CGTCGGCCGGCGGAC GGCCG-GCCGG ATCCA CCAGCGCGGCC TTTTCGGCACGTGGG TERM 4563 5054893 - 5054874 - R 100 -16.4 -4.0162 | overlap 5054853 TGCCGACACGACAAA GGCCGCGC TCAC GCGCGGCC TGGCCGAAGTGACAT nifW 5055299 - 5054961 - | nitrogenase stabilizing/protective protein RPE_4520 5056496 - 5055336 - | homocitrate synthase TERM 4564 5056079 - 5056038 - G 87 -15.1 -3.86015 | gap 1, opp_overlap 5056056 5056065, overlap 5056039 5056060 GATCTCGGTCAGAAA CCCGACATCGGCGCGCGAGG AAT CCTCGC-CGCCGACGGCGAC GTCGAGCCCCTTGTC TERM 4565 5056078 - 5056039 - G 89 -18.6 -2.91395 | gap 1, opp_overlap 5056056 5056065, overlap 5056038 5056060 ATCTCGGTCAGAAAC CCGACATCGGCGCGCGAGG AAT CCTCGC-CGCCGACGGCGA CGTCGAGCCCCTTGT RPE_4521 5057703 - 5056489 - | aminotransferase, class V RPE_4522 5058719 - 5057700 - | NifU domain-containing protein RPE_4523 5059059 - 5058739 - | HesB/YadR/YfhF RPE_4524 5059916 - 5059215 - | nitrogen fixation protein NifQ RPE_4525 5060252 - 5059941 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 4566 5060290 - 5060261 - R 74 -5.5 -4.42386 | opp_overlap 5060263 5060267, overlap 5060262 5060263 TCGCCATTGATAAAA CTCCTGCGGCACG GCGT CGTGCCGCGCGTA TCGTTTCGGTCGCCG TERM 4567 5060263 - 5060288 + r 71 -12.5 -3.02324 | opp_overlap 5060263 5060262 5060261, overlap 5060267 GCCATTGATAAAACT CCTGCGGCACG GCGT CGTGCCGCGCG TATCGTTTCGGTCGC RPE_4526 5060514 - 5060311 - | hypothetical protein RPE_4527 5061002 - 5060535 - | hypothetical protein TERM 4568 5060571 - 5060591 + g 71 -3.1 -4.60487 | overlap 5060572 ATATTTGCGGATCAT CTCGATGCC GGC GGCGACGAA TTTTTCGCCCTCCTC RPE_4528 5061405 - 5061004 - | dinitrogenase iron-molybdenum cofactor biosynthesis RPE_4529 5062825 - 5061452 - | nitrogenase molybdenum-iron cofactor biosynthesis protein NifN RPE_4530 5064500 - 5062836 - | nitrogenase MoFe cofactor biosynthesis protein NifE TERM 4569 5063073 - 5063091 + g 70 -11.6 -3.36492 | overlap 5063074 CGGATCGGCGGCGAG CGCCGCCG CCT CGGCGGCA TTGTCGGCTTCGGCG TERM 4570 5063074 - 5063090 + g 71 -15.1 -2.61681 | overlap 5063073 GGATCGGCGGCGAGC GCCGCCG CCT CGGCGGC ATTGTCGGCTTCGGC TERM 4571 5063657 - 5063640 - G 70 -10.5 -3.75024 | GCGCAGGATCAACAA CCGCGCG ATCT CGCGCAG CGAATCCGAGGTGTC TERM 4572 5064387 - 5064411 + g 100 -12.1 -4.77896 | overlap 5064374 5064388 ACCGGCCGCGGCCCC CGGCTGCAGCG GTT TGCTGCAGCCC TTTTTGCGTTCCTTC TERM 4573 5064388 - 5064410 + g 82 -15.6 -3.45653 | overlap 5064374 5064387 CCGGCCGCGGCCCCC GGCTGCAGCG GTT TGCTGCAGCC CTTTTTGCGTTCCTT RPE_4531 5066089 - 5064533 - | nitrogenase molybdenum-iron protein beta chain TERM 4574 5065979 - 5065991 + g 70 -6.2 -4.16921 | overlap 5065975 CCGGTCGATCTCCGC CGCG GGCGG CGCG TTTTCAAAATTCTTA RPE_4532 5067626 - 5066163 - | nitrogenase molybdenum-iron protein alpha chain nifH 5068605 - 5067706 - | nitrogenase reductase TERM 4575 5068918 - 5068900 - R 70 -7.4 -4.05788 | overlap 5068903 CTGTCCGAAACGAAA CAAGAGGG CAG CCCTGTTG CGAATCGATCGGCGA RPE_4534 5070048 - 5069146 - | hypothetical protein RPE_4535 5070344 - 5070141 - | NifT/FixU family protein RPE_4536 5070607 - 5070377 - | NifZ family protein RPE_4537 5070909 - 5070607 - | nitrogen fixation protein NifZ RPE_4538 5071491 - 5070952 - | TPR repeat-containing protein TERM 4576 5071320 - 5071276 - G 79 -7.7 -4.52873 | overlap 5071284 CTTGTAGAAAAAGAA GCGATACAGCCCGATCATCAC CGC GGCATGATCGGGCGCCAGCGC GCGCGCCTCGGTGAG RPE_4539 5071847 - 5071494 - | HesB/YadR/YfhF RPE_4540 5072083 - 5071859 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein RPE_4541 5073649 - 5072093 - | nitrogenase cofactor biosynthesis protein NifB TERM 4577 5072611 - 5072639 + g 72 -5.3 -4.4078 | gap 1 CCTTGCGCGCCTCGA GGTCGTAGGTGA CCTCCA TCGCC-GCGACC TTTTCGTTGGAGAAC TERM 4578 5073926 - 5073916 - R 71 -8.2 -3.95007 | overlap 5073917 CACATAAATGAACAA GCCG GCG CGGC AGGCCATTGGGCGCG TERM 4579 5074018 - 5073983 - R 100 -27.8 -3.62597 | GTCACGCCGCAACAA CAGCGACCCGCATCGT GCAA ACGATGCGGGTCGCTG AAAGGCGATAAGTGA RPE_4542 5074259 - 5074065 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein RPE_4543 5076217 - 5074487 - | transcriptional regulator NifA RPE_4544 5077402 - 5076482 - | short-chain dehydrogenase/reductase SDR RPE_4545 5077703 - 5078494 + | hypothetical protein TERM 4580 5078600 - 5078579 - f 76 -7.2 -4.36914 | opp_overlap 5078597 TCGCTTGCGACAAAA CGACCGCG TAGGAT CGCAGCCG CGGCGCTAGCTACTC RPE_4546 5078686 - 5080350 + | AMP-dependent synthetase and ligase TERM 4581 5080597 - 5080623 + T 100 -16.6 -5.5112 | opp_overlap 5080597 5080594 CCTCCCAAGAGACGA GCCCCGGGATGC CAA GCATCTTGGGGC TTTTTTGTTGATGGC TERM 4582 5080732 - 5080702 - T 100 -15.5 -4.64766 | gap 1, overlap 5080705 CTCATAGGCCAAAAA CAAGGACCGGGCCC CAGG GGACCCGGTCCT-G CAATAAGGCTCGCGA TERM 4583 5080730 - 5080705 - T 100 -18.3 -4.43351 | overlap 5080702 ATAGGCCAAAAACAA GGACCGGGCCC CAGG GGACCCGGTCC TGCAATAAGGCTCGC RPE_4547 5080935 - 5080756 - | antenna complex, alpha/beta subunit RPE_4548 5081101 - 5080958 - | antenna complex, alpha/beta subunit TERM 4584 5081942 - 5081963 + G 82 -6.5 -4.74453 | gap 1 CAGCGATTCGCCGCA GGCG-CAGCC GCA GGCTTACGCC TTTTTCGATCTGTTG TERM 4585 5083045 - 5083018 - g 81 -14.8 -3.57144 | overlap 5083035 5083037 TCGGCGATCCGGAAA GCCGGGGCGTCC AGCA AGACGCCCGGGC CTGCGTGGCCATGGC RPE_4549 5081532 - 5083520 + | adenylate/guanylate cyclase RPE_4550 5084042 - 5083566 - | hypothetical protein TERM 4586 5083869 - 5083914 + g 89 -17.6 -3.33744 | gap 1, overlap 5083869 5083905 TTGTCCGCTCGATGA CGATGGGGAGGTCCGCGGCGT CTTGC GCGCCGCGGACTTCGCCG-CG GTTTTTCGCGCCGCC TERM 4587 5083869 - 5083915 + g 100 -14.3 -4.56597 | overlap 5083869 5083905 TTGTCCGCTCGATGA CGATGGGGAGGTCCGCGGCGT CTTGC GCGCCGCGGACTTCGCCGCGG TTTTTCGCGCCGCCG TERM 4588 5084377 - 5084390 + G 70 -5.9 -4.16943 | opp_overlap 5084375 5084377, overlap 5084353 GCGCGCTGAAGGACA GCGCG ACGA TGCGC TTTTCCAATCTCGAC TERM 4589 5085436 - 5085468 + G 70 -13.4 -3.02144 | gap 1 TGTTCTATGCGATCG GCACCGGGATCGGCG GCGT CGCCGGTCCC-GCGC TGTTCGGCGCGCTGA RPE_4551 5084172 - 5085635 + | major facilitator transporter RPE_4552 5085641 - 5086438 + | HAD family hydrolase TERM 4590 5087312 - 5087330 + G 83 -16 -3.60296 | CACCTCGCGCTATGG CACCGCGC GCT GCGCGGTG TTTCCGATCGGCATC TERM 4591 5087846 - 5087826 - g 77 -13.3 -3.53012 | CTGGTGCTGTCGAAA TTCGCCGGC GCC GCCGACGAA CTCGACACCGCGCTG RPE_4553 5086659 - 5088176 + | Alpha,alpha-trehalose-phosphate synthase RPE_4554 5101903 - 5089625 - | filamentous haemagglutinin outer membrane protein TERM 4592 5090221 - 5090259 + g 70 -13 -3.02144 | GATAGCGCGCCGGAG CTGCTGCCTGCAGCGTCT TGG AGGCGCTGCCGGCCGCGA TGTTGCCGACGCTCG TERM 4593 5098984 - 5098966 - G 100 -13.1 -4.62069 | CCGCGACGTTAAAAA GGCGGGG ATCCA CCCCGCC ACGCAGTGTCAGGCT TERM 4594 5100176 - 5100158 - G 72 -4.4 -4.56597 | CTTGCCGCGCAAAAA GCCGTTAC GCT GAAGCGGC GCATCCGCAAGCTGG TERM 4595 5101233 - 5101249 + g 72 -5.1 -4.33417 | overlap 5101216 5101232 TTGGCGTTGACGCTG CCGAG GATTTGG CTCGG TTTGTTGTCCGTCCC RPE_4555 5102983 - 5101982 - | putative FecR RPE_4556 5103629 - 5103114 - | ECF subfamily RNA polymerase sigma-24 factor TERM 4596 5103193 - 5103211 + g 70 -10.2 -3.74693 | overlap 5103194 ACGAGCTGCCGGGAG ACGCCGAG CCG CTCGGCGA TTTCCTGGCGTGGGA TERM 4597 5103194 - 5103210 + g 71 -13.7 -2.84602 | overlap 5103193 CGAGCTGCCGGGAGA CGCCGAG CCG CTCGGCG ATTTCCTGGCGTGGG TERM 4598 5103429 - 5103391 - G 72 -7.2 -4.16842 | TCGACGGGCAATAAA CGCTGCCGCCGCTCGGTC CGG GAGCGATCCTCCGCAGCG TTCAAAGCGATCCTG RPE_4557 5104363 - 5103626 - | secretin/TonB short N-terminal domain-containing protein TERM 4599 5104001 - 5103983 - G 79 -8.8 -4.35483 | overlap 5103979 5103985 CGGCAGCAGAACAAA GGTCGTCG CGG CGACGAAC TCCGCCGTCAGACCG RPE_4558 5105160 - 5104564 - | hypothetical protein RPE_4559 5105821 - 5105330 - | cytochrome B561 TERM 4600 5105878 - 5105852 - R 86 -16.6 -3.18728 | ATGTTGAAGATCGAA CGACGGCGCC TTGTCCG GGCGCCGTCG CAGCTGCGATCACGG RPE_4560 5106343 - 5105888 - | calcium-binding EF-hand-containing protein TERM 4601 5106050 - 5106070 + g 70 -11.1 -3.53444 | overlap 5106045 5106051 GAAGCCGCGCGACAT CTCGGCGAC GAG GTCGCCGAA TTCCTTCTTCGACAG TERM 4602 5106051 - 5106069 + g 72 -14.6 -2.71745 | overlap 5106050 5106045 AAGCCGCGCGACATC TCGGCGAC GAG GTCGCCGA ATTCCTTCTTCGACA TERM 4603 5106926 - 5106871 - g 72 -13 -3.14132 | overlap 5106893 GCTGGCGCGGATCAA GGCGATCCTGCGCCGCAGCGAACGGC GCGA GCCGCTCGCCGGCACGCTGGGCGGCC GCAAGCTCGGCTTCG RPE_4561 5106515 - 5107252 + | two component transcriptional regulator RPE_4562 5107249 - 5108616 + | periplasmic sensor signal transduction histidine kinase RPE_4563 5109684 - 5108629 - | hypothetical protein RPE_4564 5109741 - 5110028 + | hypothetical protein TERM 4604 5110207 - 5110230 + G 75 -4.5 -4.59853 | overlap 5110223 GCGATGTTGTCGGCG CTCACGCTT TGGATC GGGCGTGGG TTTTTGCGCGATTCC RPE_4565 5110081 - 5110350 + | hypothetical protein RPE_4566 5111176 - 5110901 - | hypothetical protein TERM 4605 5111021 - 5111039 + g 77 -13.2 -3.54741 | GTTGATGATTTCGAG CAGCAACG ACC CGTTGCTG TTTGCCACGCTGATC TERM 4606 5111090 - 5111066 - G 73 -13.5 -3.31461 | GATCCACGCCGACAA CCGGCTATGCG GCT CGCCCAGCCGG GCAAGCCGTCCAAAA RPE_4567 5113773 - 5111728 - | methyl-accepting chemotaxis sensory transducer TERM 4607 5111768 - 5111783 + g 72 -11.8 -3.53012 | opp_overlap 5111755 AAGCGGTCGAGTTCG GCGCGC AGCC GCGCGC TTTCGGCCGACAGCG TERM 4608 5112159 - 5112134 - G 72 -6.7 -4.17023 | gap 1, overlap 5112126 5112135 GCAACCACCGCAAAA CCGCG-GCCCGC CTC GCCGGCGCGCGC CGCCTCGATGGTGGC RPE_4568 5114086 - 5114556 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein TERM 4609 5115093 - 5115071 - g 91 -9 -4.8048 | opp_overlap 5115082 CGCGGAGACGAAAAA CCTCGCCCGC GAC GCCGCCGAGG CGGTGGTGATCCATT RPE_4569 5114703 - 5117057 + | carbon-monoxide dehydrogenase (acceptor) TERM 4610 5117624 - 5117603 - g 70 -2.2 -4.63218 | CGCGCTGGAAGAAAA CGAGATCA TCACCG CGATCGCG TTCCCTATTCCCGAA RPE_4570 5117133 - 5117933 + | carbon-monoxide dehydrogenase (acceptor) TERM 4611 5118204 - 5118235 + T 72 -11.6 -3.29144 | gap 1 GGCCTCGTTTCAAGG CGTGGATGCCCGGGT CAA GCCCGGGCATG-ACG TTGTGGGAGCGGTGG RPE_4571 5119388 - 5118288 - | methyl-accepting chemotaxis sensory transducer TERM 4612 5119847 - 5119805 - H 70 -7.6 -4.0896 | overlap 5119793 5119806 5119838 AAAGCCGGCCCAAAA CTTCGCCGGCCCGCTCGA TGGCTTG CCGAACGAGCCGACGACC CTGGCGTCCTCGACC RPE_4572 5120081 - 5120509 + | hypothetical protein TERM 4613 5120521 - 5120547 + F 76 -9.3 -4.08216 | opp_overlap 5120511 CTAATCGCAGCCGAC CGCTGACGCGC CTCGC GCGCGTCCTCG TTTTGCACGGACTGC TERM 4614 5121300 - 5121339 + G 75 -14.2 -3.27774 | gap 1 GCTGCAATTGCACGC GCCGCG-CCGGCCATCGAC CTG GCCGGTGGTCGGGCTCGGC TTCGTGCTTCCCGTG RPE_4573 5120689 - 5121384 + | PepSY-associated TM helix domain-containing protein RPE_4574 5121395 - 5121907 + | hypothetical protein TERM 4615 5122097 - 5122109 + G 70 -4.1 -4.56597 | overlap 5122078 5122077 CGACGCCGCGGTGTC GAACG ATC TGTTC TTTTTCGAGCACCAC RPE_4575 5121951 - 5122760 + | hypothetical protein RPE_4576 5122845 - 5123783 + | ApbE family lipoprotein RPE_4577 5124645 - 5123959 - | putative hydroxylase TERM 4616 5124154 - 5124124 - G 71 -9.6 -3.78934 | opp_overlap 5124127 5124128, overlap 5124128 CTGGGTCCAGAAGAA CGAAGCGATGCGCG AGC CGCGCGTCACCTTG GTGACGTGGTGCAGG TERM 4617 5124150 - 5124128 - G 70 -11.2 -3.58208 | opp_overlap 5124128 5124127, overlap 5124124 GTCCAGAAGAACGAA GCGATGCGCG AGC CGCGCGTCAC CTTGGTGACGTGGTG TERM 4618 5124759 - 5124707 - R 74 -14.8 -2.55668 | gap 1, opp_overlap 5124686 5124682, overlap 5124706 5124753 GAGGTTGATAGCAAT CGCGGCGCCTCTGCTCCTCTCCCCG CTTG CGGGGAGAGGGGGA-AGACGCCCCC CATCCGTCATGCCCG RPE_4578 5127017 - 5124870 - | TonB-dependent siderophore receptor TERM 4619 5124906 - 5124944 + g 78 -14.5 -3.23692 | opp_overlap 5124879 5124876, overlap 5124907 GACCGAGACGTAGCG GCCGGCGCCGG-GCACGGC GTA GCCG-GCGCCGGCGGCGGA TTCGTAGTAGTACTC TERM 4620 5124907 - 5124943 + g 85 -18 -2.53894 | opp_overlap 5124879 5124876, overlap 5124906 ACCGAGACGTAGCGG CCGGCGCCGG-GCACGGC GTA GCCG-GCGCCGGCGGCGG ATTCGTAGTAGTACT TERM 4621 5127033 - 5126976 - G 77 -13.4 -3.53224 | opp_overlap 5126984, overlap 5126963 GAGCGGCGCGGGAAA CCGCGA-GATGCCGGCCTGCGCCGGC GTGCTGTA GCCGGC-CACGCCGGCGCCATCGCCG ACCACCGGATCGACT RPE_4579 5127738 - 5128646 + | MotA/TolQ/ExbB proton channel RPE_4580 5128659 - 5129090 + | biopolymer transport protein ExbD/TolR TERM 4622 5129552 - 5129523 - g 83 -4.8 -5.03715 | overlap 5129506 5129525 ACGACGCCGAAAAAA CCCCGAACGCCG CCCCGC CGGTGGTCGCGG CCTCGGCCACCACCG RPE_4581 5129087 - 5129884 + | TonB family protein TERM 4623 5130397 - 5130340 - g 76 -14.8 -3.19602 | gap 2, opp_overlap 5130389 TCGCCGAGATGAAGA CCGGCGAGGGCAAGACGCTGACGGCGAC GCTG GTCGCCG-C-GCTTCACGCGCTGGCCGG CCGCGGCGTGCATCT TERM 4624 5130679 - 5130622 - g 70 -10.4 -3.72576 | gap 1, overlap 5130623 5130660 TTTGCGCCGACGAAA CCGTGCAGCGCGGCCATGGCTTCG-CG CTGGT CGACGAAGCCGACGCCACGCTGATCGA CGACGCCGGCGTGCC RPE_4582 5129976 - 5132417 + | SecA DEAD domain-containing protein TERM 4625 5132652 - 5132672 + G 73 -11.1 -3.64703 | CCTATTGGATGGTAC TGGCGCCGA TCG TCGGCGCGA TTTGCGTCGCCACCG RPE_4583 5132486 - 5133130 + | hypothetical protein TERM 4626 5134055 - 5134089 + G 73 -10.6 -3.68836 | overlap 5134062 TGGTCCCGGGAGAGC TCGTCGCTGATCGGCG CGG TGACGTTCAGCGTCGA TTATTCGGTCGATGT RPE_4584 5133278 - 5134390 + | MscS mechanosensitive ion channel RPE_4585 5135460 - 5134408 - | hypothetical protein TERM 4627 5135696 - 5135732 + G 83 -12.1 -4.04206 | overlap 5135673 5135695 CGCCAATGTGCTGGG CGCCGCGGGGCTTTCGC GCG GCGATCGCGTCGCGGTG TTTCTGTCGCAATCG TERM 4628 5136116 - 5136084 - g 85 -10.4 -4.27584 | ACCGGCAATCCAAAA GGCGCGCTGCACGC CCATC GCGTGCTGCTCGGC CATCTGCCCAATGTC TERM 4629 5136292 - 5136273 - g 79 -3.4 -5.0133 | overlap 5136274 TATCGCGCGAAAAAA TTCGAGCC GGAC GGCGCGAT GCGGCTGATGGCCGA RPE_4586 5135484 - 5137091 + | AMP-dependent synthetase and ligase RPE_4587 5137395 - 5138243 + | hypothetical protein RPE_4588 5139700 - 5138366 - | transposase, IS4 family protein RPE_4589 5141021 - 5139936 - | chorismate synthase TERM 4630 5140030 - 5140044 + g 71 -9.2 -3.88787 | CGGATGCCGACGCAG GGGTCG TGG CGGCCC TTTGTCAGGATGTCG RPE_4590 5141685 - 5141080 - | phosphoglycerate mutase TERM 4631 5141821 - 5141876 + r 87 -17.4 -2.90723 | opp_overlap 5141803, overlap 5141810 CGGACGACGGCGGTT ACGGCGTCATCCTTCGAGGCGCGCCG AAGG CGGCGCGCGCCTCAGGATGACGGCGC TGTGCTTGCCGCTCA RPE_4591 5142707 - 5141889 - | enoyl-(acyl carrier protein) reductase TERM 4632 5142534 - 5142557 + g 83 -4.4 -5.0133 | gap 1, opp_overlap 5142526, overlap 5142536 CACCAGACCGCCGAT CTCGGCG-GCC AAC GGCTCGACGCG TTTTTTCAGCGCATC RPE_4592 5144305 - 5143337 - | chaperone DnaJ domain-containing protein RPE_4593 5144923 - 5144417 - | hypothetical protein RPE_4594 5144939 - 5145580 + | pyridoxamine 5'-phosphate oxidase RPE_4595 5145577 - 5146353 + | short-chain dehydrogenase/reductase SDR RPE_4596 5146843 - 5146499 - | FmdB family regulatory protein TERM 4633 5146739 - 5146710 - G 76 -8.5 -4.19817 | gap 1, overlap 5146711 5146729 GGCATGCAGGCAAAA TGCGGCGC-GGTGA GAA TCACCCGCGGCGCG TCGACCGCGCAGACC TERM 4634 5146874 - 5146932 + r 86 -16.2 -3.1505 | gap 4 GCGAATTGATTTCGT TCCCTGC--GATGG-GTGCGGGGC-GGCCG ATA CGCCCCGTCCCGCACCCCGTCGCGCAGGGA TTCATCCGCCGTCAT RPE_4597 5148305 - 5147076 - | formamidase TERM 4635 5148113 - 5148141 + g 73 -9.5 -3.99374 | opp_overlap 5148112 GCACGATCGACAGAT CGATGTCGCGGAC GTC GTCGGCGGAATCG TTGTTCTTGATGAAG RPE_4598 5149026 - 5148337 - | ABC transporter related RPE_4599 5149980 - 5149225 - | ABC transporter related RPE_4600 5151145 - 5149991 - | inner-membrane translocator RPE_4601 5152088 - 5151162 - | inner-membrane translocator RPE_4602 5153525 - 5152263 - | amide-UreA binding protein TERM 4636 5154063 - 5154099 + G 70 -8.5 -3.96506 | CACCTTCATCTTCTT CGCCATCGAGGCGGTGA TCC TCGCCACCGCGCTGGAG TTGTGTTTTGGGGTG TERM 4637 5154345 - 5154363 + G 73 -12.4 -3.37796 | opp_overlap 5154306 TTTGTTGCTGTTCGG CACCGCCG CGG CGGTGGTG TTCTCGCTGGTGGCG RPE_4603 5153674 - 5157045 + | periplasmic sensor hybrid histidine kinase TERM 4638 5157557 - 5157527 - g 79 -6.7 -4.59773 | overlap 5157529 5157554 CCGCAGGCGCAAAAA CTGCTCGCCGGCG ACGAG CGCCAGGAAGCCG GCGCGTCATACGCGT RPE_4604 5157035 - 5157964 + | two component LuxR family transcriptional regulator TERM 4639 5158098 - 5158064 - T 74 -11.6 -3.53761 | gap 2, opp_overlap 5158059, overlap 5158066 5158085 CAACCTCGTTGCAAA TACGTCGATGGCCGGG ACAAG CCCGGCCAT-GACG-A GTGGATAGTTTAGAC TERM 4640 5158097 - 5158066 - T 88 -16.7 -3.34517 | gap 1, opp_overlap 5158059, overlap 5158064 5158085 ACCTCGTTGCAAATA CGTCGATGGCCGGG ACAAG CCCGGCCAT-GACG AGTGGATAGTTTAGA TERM 4641 5158233 - 5158251 + T 76 -8.1 -4.11216 | CTTCTCCCACGGCTT GTCGGTG CCGCT CACCGGC TTTTCGCCGTGCAGG RPE_4605 5159106 - 5158333 - | hypothetical protein RPE_4606 5159459 - 5159103 - | hypothetical protein TERM 4642 5159369 - 5159313 - G 80 -15.8 -3.27923 | gap 1, overlap 5159306 5159318 CGCCAACAGCACCAA GACCAGCGCCGGCATGAAGATCACCGC ACCC GCGGCGATCATGGCGCCGGCGC-GACC GACCTGGCCGACCTT TERM 4643 5159365 - 5159318 - G 93 -19.8 -2.78762 | overlap 5159306 5159313 ACAGCACCAAGACCA GCGCCGGCATGAAGATCACCGC ACCC GCGGCGATCATGGCGCCGGCGC GACCGACCTGGCCGA RPE_4607 5160078 - 5159464 - | hypothetical protein TERM 4644 5159998 - 5160012 + g 70 -11.4 -3.41878 | opp_overlap 5159979 CTGCTCGGTGGCGCC GCGCAG GCT CTGCGC TTGTGACTTGGCACC RPE_4608 5161329 - 5160091 - | late embryogenesis abundant protein TERM 4645 5162890 - 5162839 - g 100 -20.2 -3.16881 | gap 1, opp_overlap 5162836 5162848, overlap 5162886 GAGCGAGGCGATCAA GGCGATCTGCGTGCGGCGCGACGGC GCC ACCGTTTCGGCGCA-GCAGATCGCC GACTTCGTCGGCAGC RPE_4609 5161508 - 5163019 + | AMP-dependent synthetase and ligase TERM 4646 5163170 - 5163130 - f 78 -10.4 -4.06419 | gap 1, overlap 5163133 CCGCCCGACAAACAA TTAGTCCCTGGTCGGTGGC GTGG GCCACCGAC-AGGGGCGGA CTAGTCGTGCGACGA TERM 4647 5163167 - 5163133 - f 84 -16.5 -3.07135 | gap 1, overlap 5163130 CCCGACAAACAATTA GTCCCTGGTCGGTGGC GTGG GCCACCGAC-AGGGGC GGACTAGTCGTGCGA RPE_4610 5163213 - 5163533 + | hypothetical protein RPE_4611 5164281 - 5163526 - | CRP/FNR family transcriptional regulator TERM 4648 5164351 - 5164404 + r 81 -13.8 -3.65046 | gap 2, opp_overlap 5164346 5164352 5164353, overlap 5164352 CTCGAATTGACCAAA AC-CGTCGTTCCGGG-ATGCGCGCCG GTTA CGGCGCGCAGACCCGGAACCCCGAGA TTGTTACGATGAACG TERM 4649 5164352 - 5164403 + r 84 -17.3 -2.78813 | gap 2, opp_overlap 5164346 5164352 5164353, overlap 5164351 TCGAATTGACCAAAA C-CGTCGTTCCGGG-ATGCGCGCCG GTTA CGGCGCGCAGACCCGGAACCCCGAG ATTGTTACGATGAAC TERM 4650 5164402 - 5164352 - R 100 -19.7 -4.30978 | gap 1, opp_overlap 5164352 5164351, overlap 5164346 5164353 TCGAATTGACCAAAA CCGTCGTTCCGGG-ATGCGCGCCG GTTA CGGCGCGCAGACCCGGAACCCCGA GATTGTTACGATGAA TERM 4651 5164401 - 5164353 - R 95 -21 -3.18105 | gap 1, opp_overlap 5164352 5164351, overlap 5164346 5164352 CGAATTGACCAAAAC CGTCGTTCCGGG-ATGCGCGCCG GTTA CGGCGCGCAGACCCGGAACCCCG AGATTGTTACGATGA TERM 4652 5164470 - 5164431 - R 77 -14.2 -2.89039 | gap 1, overlap 5164418 AACGATGCCCAGAGA TTCCGGGTTCGCCCGCCGC TGC GCGGCGCCCGC-CCCGGAA TGACGACGTAAAATG TERM 4653 5164953 - 5164996 + r 70 -7.2 -4.07568 | gap 1, opp_overlap 5164927 5164956 TCTACCCATTGCACA CGAGGCCGCG-GGTGCATCGG CAC CCGGCGTTCCGCACGCCCTCG TTTTAGAAGAGGGCG TERM 4654 5165049 - 5165028 - R 93 -13.7 -4.18494 | gap 1 GACGTTCACCCAAAA CCCG-GGCGC CAC GCGCCGCGGG AACGGGACGGCATGT RPE_4612 5166656 - 5165373 - | phosphoribosylamine--glycine ligase TERM 4655 5165878 - 5165858 - G 82 -16.9 -3.02144 | opp_overlap 5165850 TCAGCCCGGCGAACA GCACGCCCT TGT AGGGCGTGC CGCGCGCCGCCATCG TERM 4656 5166090 - 5166078 - G 71 -9.1 -3.76482 | GCACAGCACGAAGAA CGAGG CTT CCTCG CCCTGCATGAATTCT TERM 4657 5166721 - 5166736 + H 71 -6 -4.27316 | GCTCAAGCCTCCGCG CCGCCG CTGC CGTCGG TTTTGACTTAAGAAG TERM 4658 5167037 - 5167007 - g 75 -9 -4.14739 | gap 1, overlap 5167008 TGATCGAGCCCAAAA TCGGCGGC-CGCT GGGGCG AGCGCGCGGCCGA CGGCACCGAAAGCGT RPE_4613 5166829 - 5167323 + | hypothetical protein RPE_4614 5167655 - 5167326 - | hypothetical protein RPE_4615 5168194 - 5167637 - | hypothetical protein RPE_4616 5169186 - 5168191 - | alpha/beta hydrolase TERM 4659 5170475 - 5170507 + G 74 -14.7 -3.06796 | opp_overlap 5170471 CGGCTCAAGCATTGC GCGCGCGCCGCGCTG CGG CAGCGCCGCGACCGC TTCGATGCGCTGGCG xseA 5169323 - 5170963 + | exodeoxyribonuclease VII large subunit RPE_4618 5172249 - 5171281 - | glucokinase TERM 4660 5171878 - 5171854 - G 83 -14.9 -3.63515 | GCCGAGCGCGAATAA CGGCGCTCCAG GCA CCGGCGCGCCG TCGCCGACCTGGTGC RPE_4619 5173610 - 5172246 - | Beta-glucosidase TERM 4661 5172872 - 5172843 - G 70 -12.9 -3.01712 | gap 1 GGCCTCGTTCCAATA GGTGCCGAACGCCG CCG CGGC-TTCGGCATC GGCCGGGCTCGACGG TERM 4662 5174009 - 5173965 - g 75 -11.5 -3.63515 | gap 3, overlap 5173951 5173950 TGGCAGCCGCAACAA TTGGCGCGCC-G-CCGCC-GCC GATC GGCTGGCGGGCTGGCACGTCAA CACCATCGGCTGCTG TERM 4663 5174178 - 5174223 + G 72 -13.1 -3.14132 | gap 1, opp_overlap 5174181 CCAGCACCGCGCCAA GGATCTGTGCACGCCGCGGCGC AAT GCGCCGCAGC-TGCTCGGCACC TTCATCGACAACGAA RPE_4620 5173741 - 5175087 + | agarase RPE_4621 5175275 - 5175084 - | hypothetical protein TERM 4664 5175344 - 5175362 + r 72 -3.8 -4.59853 | gap 1, overlap 5175313 5175344 CATTGGGCCTGCACC GGGG-CG ATTTGG CGACCCC TTTTTGACGCGTTGC RPE_4622 5177227 - 5175893 - | 6-aminohexanoate-dimer hydrolase TERM 4665 5176780 - 5176748 - G 70 -12 -3.35679 | TTTCGTGACCGAGAA GGCGATGTGCG-GCCG CGC CGGCGCGC-CTTCGCC AAAATACTTCTCGAA RPE_4623 5177419 - 5177823 + | hypothetical protein TERM 4666 5178834 - 5178846 + G 86 -6.9 -4.95155 | CTGCTGCCGATCTGC GTGCC GCT GGCGC TTTTTCTGGTCTGGC TERM 4667 5179441 - 5179455 + G 86 -8.6 -4.82901 | ACGGCATGCTGCTGT TCGTGA TCA TCACGA TTTTTCTCGCCGGGC RPE_4624 5178276 - 5179979 + | potassium-transporting ATPase subunit A RPE_4625 5179997 - 5182072 + | potassium-transporting ATPase subunit B RPE_4626 5182085 - 5182687 + | potassium-transporting ATPase, C subunit RPE_4627 5182704 - 5185394 + | osmosensitive K+ channel signal transduction histidine kinase RPE_4628 5185391 - 5186083 + | two component transcriptional regulator RPE_4629 5186252 - 5186956 + | Crp/FNR family transcriptional regulator RPE_4630 5187670 - 5190693 + | adenylate/guanylate cyclase TERM 4668 5190721 - 5190753 + G 77 -5.3 -4.68724 | opp_overlap 5190721 TTCATCCCGATGACA TGCCCCCGGGCGCCC GCC GCGCGCTCTACGGCA TTTTCTGTTGGCTGA RPE_4631 5190690 - 5191970 + | hypothetical protein RPE_4632 5191984 - 5193768 + | hypothetical protein TERM 4669 5194668 - 5194685 + G 73 -12.7 -3.40403 | AAGATGATGGGACGG CGGCAGG ATGG CCTGCCG TTGTGGTGGAAGGGC RPE_4633 5193765 - 5195225 + | putative iron-dependent peroxidase RPE_4634 5195907 - 5195236 - | Hly-III family protein TERM 4670 5195742 - 5195719 - G 75 -9.4 -4.14977 | overlap 5195733 5195734 GAACATCAGAAAGAA GCCGGCGGCG TAAA CGCCGACCGC AAACGCGGCGCTGAG RPE_4635 5196727 - 5196239 - | cyanate hydratase TERM 4671 5196822 - 5196848 + r 79 -13.6 -3.53012 | opp_overlap 5196785 AGCGCGCCCGCAGCG GCGCCGCGACCG GGG CGATCGCGCCGC TTTCGGCCGGCGGCA RPE_4636 5197725 - 5196805 - | ABC transporter related RPE_4637 5198570 - 5197731 - | nitrate ABC transporter, inner membrane subunit RPE_4638 5200119 - 5198731 - | ABC-type nitrate transport system periplasmic component TERM 4672 5199785 - 5199800 + g 70 -10.4 -3.63744 | opp_overlap 5199784, overlap 5199784 GTGATCGGGATGAAG CCGACC TTGA GGTCGG TCTTTTCCAAGGGGC TERM 4673 5200236 - 5200222 - H 76 -7.2 -4.3534 | opp_overlap 5200216, overlap 5200216 5200233 TGGCAATTACGAAAA TTCGTA ATA TACGAA ATCTCGTATTCGAAA TERM 4674 5200263 - 5200233 - H 71 -12.8 -3.09983 | opp_overlap 5200216, overlap 5200222 5200216 5200238 AAAATTCGTAATATA CGAAATCTCGTATT CGA AATACGAAATCTCG GAGTGCAGCCAGTGG TERM 4675 5200683 - 5200656 - g 83 -8.3 -4.60041 | opp_overlap 5200655 AGCGATCTGGAAAAA CGGCGGCGCCG CTATGT CGACGCCATCG CCGACAACTACATGC RPE_4639 5200275 - 5202212 + | Fis family transcriptional regulator RPE_4640 5206085 - 5202546 - | hypothetical protein TERM 4676 5202714 - 5202680 - G 75 -14.3 -3.29144 | gap 1 GCAGGTCGTTCAGAA CGCCGCAGCGGT-CGA CGTG CCGCACCACCGCGGCG ATCACGCCGGCGCGA TERM 4677 5204551 - 5204507 - G 71 -14.2 -2.81966 | gap 1, overlap 5204497 5204498 GGAAACGCGAGTACA GCGTCCGC-ACCGCGTCCTCG CCGC CGAGCACGCGGCCGAGGTCGC CCTCCCGGATCGTCG TERM 4678 5205345 - 5205327 - G 70 -11.6 -3.35438 | CATCACAGGGGACAA GCGGGCGG CGA CCGCCGGC ATCAGCTTCGCGACG RPE_4641 5208013 - 5206082 - | hypothetical protein TERM 4679 5207409 - 5207442 + g 79 -2.3 -5.1101 | overlap 5207398 5207397 5207410 GCAGGGCTCGACGCG ACGAGCCATTTCG CGACCGGT CGAAACGGCACGA TTTTTTCGGTGCTGC TERM 4680 5207974 - 5207956 - G 78 -5.9 -4.57837 | overlap 5207957 5207958 AGAGCTTGCCAAAAA CCGCGCG GTCGA CGCGCAA CGCGTCGGCTAACCG RPE_4642 5210830 - 5208020 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 4681 5208797 - 5208783 - G 72 -11.4 -3.60098 | ACCGCGGAGGTGAAA GCCGGA ATC TCCGGC AGCGGCAACAGCGAG TERM 4682 5210721 - 5210669 - G 70 -6.2 -4.18018 | gap 2, overlap 5210644 CGGTTGCAGCGAAAA CCGCTCCGATTGCAGCAGCGCCGCAA GTC TCGCC-CGCTGC-GCTGTCAGATCGG GAGGAGATTCGAACT TERM 4683 5212725 - 5212744 + G 74 -12.1 -3.54424 | GAACTCGATGCCGTC GCGGCCG CCGGCC CGGCCGC TTTCCAGGGCTGCGA RPE_4643 5211291 - 5214179 + | phospholipase D/transphosphatidylase RPE_4644 5216260 - 5214605 - | major facilitator transporter RPE_4645 5216536 - 5216318 - | putative NAD-dependent formate dehydrogenase delta subunit RPE_4646 5217344 - 5216526 - | formate dehydrogenase accessory protein TERM 4684 5217288 - 5217310 + g 87 -14.8 -3.85817 | overlap 5217289 CGCGCGTTGCCCCTC GCTGGCGCCG CCG CGGCGCCAGA TTTGTCGAGGGACGT TERM 4685 5217289 - 5217309 + g 86 -18.3 -2.91276 | overlap 5217288 GCGCGTTGCCCCTCG CTGGCGCCG CCG CGGCGCCAG ATTTGTCGAGGGACG RPE_4647 5220195 - 5217349 - | formate dehydrogenase, alpha subunit TERM 4686 5218066 - 5218123 + g 74 -9.9 -3.78934 | gap 3 CTCCAGCCCGTTGCG CGGCGCCATCACC-TTG-CGCACG-CGC TGGAT GCGGCGTTCGGCATTGGTGAAGGTGCCG TTCTTCTCCAGGAAG RPE_4648 5221764 - 5220208 - | NADH dehydrogenase (quinone) TERM 4687 5221041 - 5221066 + g 75 -13.9 -3.21912 | opp_overlap 5221002 GGCCGAGCCAGCCGG CGCGGCGGGCG CCCG CGATCGCCGCG TTCATCGATTCCACC RPE_4649 5222243 - 5221761 - | formate dehydrogenase subunit gamma RPE_4650 5223255 - 5222365 - | LysR family transcriptional regulator RPE_4651 5226744 - 5223523 - | acriflavin resistance protein RPE_4652 5228111 - 5226741 - | RND family efflux transporter MFP subunit RPE_4653 5228142 - 5228345 + | hypothetical protein RPE_4654 5229502 - 5228510 - | CHAD domain-containing protein TERM 4688 5229260 - 5229224 - G 70 -10.9 -3.59247 | gap 1 CAACAACTCGGCAAA GATCGAGATCGCGGCG CGCATC CGCCGCAGTC-CGATC CGCATCTGATGCACG RPE_4655 5231083 - 5229752 - | periplasmic sensor signal transduction histidine kinase TERM 4689 5230563 - 5230541 - G 71 -12.6 -3.30124 | overlap 5230553 5230554 GGCGAGCGCCGACAA CGGCGCCGAC AAC GCCCGCGCCG CCCACAGGCCCAGCA RPE_4656 5231856 - 5231080 - | two component transcriptional regulator TERM 4690 5231992 - 5231967 - R 100 -21.9 -4.81083 | opp_overlap 5231967 TCGAACCACGAAAAA GCCGCGCACGG TGGC CCGTGCGCGGC TTAATATCTCCAGAG TERM 4691 5231967 - 5231992 + r 100 -21.9 -3.32022 | opp_overlap 5231967 TCGAACCACGAAAAA GCCGCGCACGG TGGC CCGTGCGCGGC TTAATATCTCCAGAG RPE_4657 5232671 - 5232030 - | cytochrome B561 RPE_4658 5235914 - 5232768 - | CzcA family heavy metal efflux protein TERM 4692 5233164 - 5233107 - G 71 -14.2 -2.92642 | gap 2, overlap 5233096 5233109 5233160 AGCATGATCGAGATA GATCAGCATCACCACGCCGGTCTCGGCG GCGA CGCCG-G-CCAGCGCGATGAAACCGACC ACCACCGCGACCGAC TERM 4693 5233162 - 5233109 - G 70 -13.2 -3.01416 | gap 2, overlap 5233096 5233107 5233160 CATGATCGAGATAGA TCAGCATCACCACGCCGGTCTCGGCG GCGA CGCCG-G-CCAGCGCGATGAAACCGA CCACCACCGCGACCG TERM 4694 5233699 - 5233654 - G 71 -3.3 -4.66163 | gap 3 ATGTTGACCGAAAAA CGCT-GGCGGCCTTCCACCGTG GTGGT CACGGTCT--GGCCACCGAGCG CGGTGGCGATCACAT TERM 4695 5233832 - 5233783 - G 72 -11.9 -3.49653 | opp_overlap 5233809 5233811, overlap 5233785 ACGATGTCGAGATAA TAGCCGCCGAGCACACGCTCGGC ATAG GCCGAGCTGGTGCCCGGCACCGC GCGCAGCACCTGCTC TERM 4696 5233830 - 5233785 - G 93 -18.9 -3.32202 | opp_overlap 5233809 5233811, overlap 5233783 GATGTCGAGATAATA GCCGCCGAGCACACGCTCGGC ATAG GCCGAGCTGGTGCCCGGCACC GCGCGCAGCACCTGC TERM 4697 5235694 - 5235657 - G 70 -10.5 -3.64487 | gap 1, overlap 5235663 CGACACGCCGAAGAA CGA-GAAGCCGCGCACCA CTT TGGAGCGCGGCACCGTCA GCATCGCCGAACTCA TERM 4698 5235687 - 5235663 - G 89 -17.1 -3.61089 | overlap 5235657 GCCGAAGAACGAGAA GCCGCGCACCA CTT TGGAGCGCGGC ACCGTCAGCATCGCC RPE_4659 5237326 - 5235911 - | RND family efflux transporter MFP subunit TERM 4699 5236354 - 5236307 - G 89 -10.4 -4.57073 | overlap 5236308 GACGGTGCCCAAAAA TTCGCGCTGCGGATAAGCGCGC GGGC GCACGCTCACGCGCTGCCCGAC CGCCACCGCGCCGAG TERM 4700 5236353 - 5236308 - G 75 -13.9 -3.33922 | overlap 5236307 ACGGTGCCCAAAAAT TCGCGCTGCGGATAAGCGCGC GGGC GCACGCTCACGCGCTGCCCGA CCGCCACCGCGCCGA TERM 4701 5236833 - 5236875 + g 70 -3.8 -4.56597 | overlap 5236834 ATCGAGGCACGGATC ACCCGCGAGGCGACGCGC TCGGATT GCACGCCGCTGCGCTGGA TTTTTCCGGGCGAGA TERM 4702 5237080 - 5237124 + g 100 -20 -3.04144 | gap 2, opp_overlap 5237077 5237073, overlap 5237083 CGTCGAAACTGAGAT CGGCGCCGGGCGGCACCGCGCG AAA CGCGCGG--CCGTCCGGCGTGG TCTTCGGCGTCAGCG TERM 4703 5237083 - 5237121 + g 100 -22.5 -2.74523 | gap 2, opp_overlap 5237077 5237073, overlap 5237080 CGAAACTGAGATCGG CGCCGGGCGGCACCGCGCG AAA CGCGCGG--CCGTCCGGCG TGGTCTTCGGCGTCA RPE_4660 5237724 - 5237323 - | hypothetical protein RPE_4661 5238370 - 5237810 - | hypothetical protein RPE_4662 5239741 - 5238416 - | methyl-accepting chemotaxis sensory transducer RPE_4663 5240237 - 5239716 - | putative PAS/PAC sensor protein RPE_4664 5241561 - 5240443 - | ABC-2 type transporter RPE_4665 5244332 - 5241558 - | ABC transporter related TERM 4704 5242305 - 5242278 - G 73 -14.8 -2.87344 | gap 1 CATCGCCTGGACATA GCCGCGCGCGGTC TCC GCCCGCGC-CGGC ATCGCGCCGTCGATC TERM 4705 5243174 - 5243145 - G 78 -15.8 -3.14468 | gap 1 GTCGATGAGATCGAA GCGCCGCGCCATC TCGCT GATG-CGCGGCGC AATCGCCTCCGGCGC TERM 4706 5244018 - 5243997 - G 84 -9.5 -4.57073 | overlap 5244014 CAGCCGGCCGAAAAA GTCGATGTT CTCG AACACCGAC AGCGTCGGATAGAGA RPE_4666 5245441 - 5244371 - | secretion protein HlyD family protein TERM 4707 5244919 - 5244958 + g 80 -15.6 -3.34013 | gap 1 CCTCGGTGGCGGCAA GCTG-CGCCTTGGCCGCGG CCA CCGCGGCGCGGGCGCCGGC TTCGTTGGCGCGATC TERM 4708 5245398 - 5245377 - G 85 -10.1 -4.18018 | CGTTTCCAGCCAAAA TAGCCGCCG CCCA CCGCGGCTA CGATGATGACCGCGA TERM 4709 5246230 - 5246179 - g 72 -5.7 -4.30844 | gap 2, overlap 5246183 ACGGCATCATCAAAA CCGAGGCCGCGGTCGAACCGGCGCG GTGA CGCGCCGGCTTGGC-GAGGG-TCAG AAGAAAATATCCTCG RPE_4667 5245620 - 5246207 + | TetR family transcriptional regulator RPE_4668 5247957 - 5246227 - | methyl-accepting chemotaxis sensory transducer RPE_4669 5249054 - 5247963 - | response regulator receiver modulated CheB methylesterase RPE_4670 5249923 - 5249072 - | MCP methyltransferase, CheR-type TERM 4710 5249690 - 5249704 + g 71 -2.8 -4.59773 | GTTCGTGGTGACGCA GTCGAT CAG ATGGAC TTTTTCGGCCTCGGA RPE_4671 5250410 - 5249928 - | CheW protein TERM 4711 5250430 - 5250477 + r 70 -12.1 -3.17723 | gap 3, overlap 5250420 5250460 TCGTTCCTCAATCGT GCGGTA-TGGTCGCG--GCCCCGA GTA TCGGGGCCGCGCGGCGGCTACCGC TTGAATTCGGCGTCG RPE_4672 5252543 - 5250471 - | methyl-accepting chemotaxis sensory transducer TERM 4712 5251869 - 5251908 + g 73 -10.8 -3.73873 | gap 1 GGTCGCGGCGCGCGC GGTCGCGGTC-CTGAGATC GCT GATCTTGGCGATGGCGACC TTGTATTCCGTTTCG TERM 4713 5252609 - 5252638 + r 85 -15.7 -3.4759 | opp_overlap 5252606, overlap 5252610 GCCTCTGGAAGACCC GTGGGCTTCGCCG CAAG CGGCGAAGCCCGG TTCGTTGTCATCGGT TERM 4714 5252610 - 5252637 + r 87 -19.2 -2.68072 | opp_overlap 5252606, overlap 5252609 CCTCTGGAAGACCCG TGGGCTTCGCCG CAAG CGGCGAAGCCCG GTTCGTTGTCATCGG RPE_4673 5254841 - 5252646 - | methyl-accepting chemotaxis sensory transducer RPE_4674 5255374 - 5254889 - | CheW protein RPE_4675 5257419 - 5255374 - | CheA signal transduction histidine kinases RPE_4676 5257781 - 5257416 - | response regulator receiver protein RPE_4677 5258101 - 5257781 - | anti-sigma-factor antagonist TERM 4715 5259118 - 5259137 + G 71 -2.8 -4.67353 | CGCCTACACGCTGGA TGGCTTTG ATAG CGAAGGCA TTTTTCCCTCCATCC TERM 4716 5259748 - 5259694 - g 78 -9.9 -4.14392 | gap 1, overlap 5259696 CGTCAACCCGCAAAA GATCGACGGCGACATCGTGCAGCATC TGGT GACGCTGACCGACGGCGGCGCCGA-C TACACCTTCGATTGC TERM 4717 5259747 - 5259696 - g 79 -13.6 -3.67 | overlap 5259694 TCAACCCGCAAAAGA TCGACGGCGACATCGTGCAGCATC TGGT GACGCTGACCGACGGCGGCGCCGA CTACACCTTCGATTG RPE_4678 5258975 - 5260084 + | alcohol dehydrogenase RPE_4679 5260162 - 5260731 + | glutathione-dependent formaldehyde-activating enzyme TERM 4718 5261230 - 5261254 + G 74 -14.9 -3.00525 | opp_overlap 5261214, overlap 5261226 5261246 CCCGCGCGGCGACGA CGTGCCGGGCG ATC CGGCCGGCGCG TATGATTTCGGCCAC TERM 4719 5261246 - 5261278 + G 74 -5.6 -4.52589 | gap 1, overlap 5261230 5261226 GTGCCGGGCGATCCG GCCGGCG-CGT ATGATTTCGGCC ACGGCGCCGGC TTTTATCTCGACGCC TERM 4720 5261428 - 5261479 + G 78 -15.2 -3.30441 | GATGGGCGGTCACGG CGCGCTGACGCTGGCGCT-GCGGC ACCCCG GCCGCTACCGC-GCCGTCAGCGCG TTCTCGCCGATCGTG RPE_4680 5260964 - 5261809 + | carboxylesterase RPE_4681 5262346 - 5261816 - | hypothetical protein TERM 4721 5262313 - 5262289 - G 89 -10.6 -4.18018 | overlap 5262290 CGGCTTGAGCCAAAA CCGGCGCCGG CGCGC CCAGCGCCGC CAGCATCCCGCCGAG TERM 4722 5262312 - 5262290 - G 73 -14.1 -3.10597 | overlap 5262289 GGCTTGAGCCAAAAC CGGCGCCGG CGCGC CCAGCGCCG CCAGCATCCCGCCGA TERM 4723 5263122 - 5263094 - g 74 -14.5 -3.03243 | overlap 5263096 ACGCATCTTCGAAGA CACCGGCGGTGCG CGG CGCACCGACAGCG GCGTCACGCTGATCC TERM 4724 5263120 - 5263096 - g 70 -13.5 -3.07344 | overlap 5263094 GCATCTTCGAAGACA CCGGCGGTGCG CGG CGCACCGACAG CGGCGTCACGCTGAT RPE_4682 5262483 - 5263664 + | hypothetical protein TERM 4725 5263794 - 5263770 - g 75 -13.6 -3.44274 | overlap 5263764 CAACGAGAAGAGCAA CACGGTGTCG GTGAT CGACACCGCG ACCTGGAGCGTGACC RPE_4683 5263675 - 5264643 + | YVTN beta-propeller repeat-containing protein RPE_4684 5264640 - 5265452 + | ABC transporter related RPE_4685 5265445 - 5266290 + | ABC-2 type transporter RPE_4686 5266287 - 5266904 + | hypothetical protein TERM 4726 5266940 - 5266971 + T 71 -10.9 -3.44848 | gap 1, overlap 5266938 CTGAAGGCCCATCCC CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG TCTTTGATACAACGC RPE_4687 5267460 - 5267053 - | hypothetical protein TERM 4727 5267333 - 5267354 + g 74 -12.3 -3.59979 | CGCTTCGACCCCGGC TGGCGCTCG GCAT CGAGCGTCA TTTCGAGTCCGAACG TERM 4728 5267415 - 5267432 + g 81 -11.3 -4.07568 | CGAGCGCAATCGCGA TCGTCGC GATC GCGACGA TTTTGCGGAAACGAG TERM 4729 5267817 - 5267838 + H 79 -9.4 -4.18762 | gap 1 ACATGCCTTCGCCTT CCCGCGGCG CGTTT CGCC-CGGG TTTTGGCTGAACGTT TERM 4730 5268989 - 5269047 + H 83 -14.7 -3.53091 | gap 3, opp_overlap 5269039 CCCCTCACCCGGATC GCTGACG-CGATCC-GACCTCTCCCCGC AAAAGA GCGGGGAGAGGTGAGGAACGGCG-CGGC TTTCGGCCAAACGCT TERM 4731 5270882 - 5270868 - g 85 -10 -4.17048 | GGCTGCCCAAAACAA CGATCG TCT CGATCG GCCACCGTTCCACCT RPE_4689 5269244 - 5270983 + | ABC transporter TERM 4732 5271142 - 5271105 - T 74 -6.2 -4.48713 | gap 1, opp_overlap 5271107, overlap 5271107 CCGAGCAAGAACAAA GACGCG-GATGGCCGGG ACGAG CCCGGCCATGACCCGTT GATAGGGTTGGTAGC TERM 4733 5271140 - 5271107 - T 71 -8.8 -3.8457 | gap 1, opp_overlap 5271107, overlap 5271105 GAGCAAGAACAAAGA CGCG-GATGGCCGGG ACGAG CCCGGCCATGACCCG TTGATAGGGTTGGTA TERM 4734 5271235 - 5271200 - T 95 -19.2 -3.40403 | opp_overlap 5271206, overlap 5271206 GCGTTGGTACGATAA TAAAAAGGGCGGCAGA TCGC TCTGCCGCCCTTCTCA AAAGTCTCGGGAAGA TERM 4735 5271206 - 5271229 + T 93 -18.2 -3.30771 | opp_overlap 5271200 5271206 GTACGATAATAAAAA GGGCGGCAGA TCGC TCTGCCGCCC TTCTCAAAAGTCTCG TERM 4736 5271229 - 5271206 - T 100 -18.2 -5.22006 | opp_overlap 5271206, overlap 5271200 GTACGATAATAAAAA GGGCGGCAGA TCGC TCTGCCGCCC TTCTCAAAAGTCTCG RPE_4690 5272197 - 5271256 - | hypothetical protein TERM 4737 5272649 - 5272621 - R 95 -11 -4.52589 | gap 1, opp_overlap 5272629, overlap 5272626 CCTTCGCACACAAAA GCAAAGGCCGCGC TGCT GCGCGGCCTT-GA AGGTCGAGGGAGCCG TERM 4738 5272645 - 5272626 - R 100 -16.4 -4.30161 | opp_overlap 5272629, overlap 5272621 GCACACAAAAGCAAA GGCCGCGC TGCT GCGCGGCC TTGAAGGTCGAGGGA RPE_4691 5273320 - 5272694 - | hypothetical protein TERM 4739 5272990 - 5273010 + g 75 -4.6 -4.63218 | TCTTGCCGCTACTGG CTTTCGCC TTCTT GGCGACGG TTTTCTTGGCGGAAC RPE_4692 5274711 - 5273398 - | hypothetical protein RPE_4693 5275949 - 5274708 - | FAD linked oxidase domain-containing protein TERM 4740 5276049 - 5276096 + r 100 -31.4 -3.19192 | gap 1 TCGCCGGAAGTGGAG GCCGGGTGGGGGTGCCGCGGGCA CCG TGCTCGGGGC-CCCCCACCCGGC TTCGCTTCGCTGCGC RPE_4694 5277702 - 5276209 - | FAD linked oxidase domain-containing protein TERM 4741 5277815 - 5277862 + r 100 -28.6 -3.06183 | opp_overlap 5277820 5277824, overlap 5277820 5277824 GAGGAGGCGTAGCCG ACGAAGCAATCCAGGGGCTCCG TGCT CGGCGCCCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 4742 5277820 - 5277857 + r 100 -25.7 -3.19192 | opp_overlap 5277820 5277824, overlap 5277815 5277824 GGCGTAGCCGACGAA GCAATCCAGGGGCTCCG TGCT CGGCGCCCCTGGATTGC TTCGCTTCGCTCGCA TERM 4743 5277857 - 5277820 - R 100 -25.7 -3.16564 | opp_overlap 5277820 5277815 5277824, overlap 5277824 GGCGTAGCCGACGAA GCAATCCAGGGGCTCCG TGCT CGGCGCCCCTGGATTGC TTCGCTTCGCTCGCA TERM 4744 5277824 - 5277853 + r 95 -19.3 -3.40788 | opp_overlap 5277820 5277824, overlap 5277820 5277815 TAGCCGACGAAGCAA TCCAGGGGCTCCG TGCT CGGCGCCCCTGGA TTGCTTCGCTTCGCT TERM 4745 5277853 - 5277824 - R 95 -19.3 -3.40371 | opp_overlap 5277824 5277820 5277815, overlap 5277820 TAGCCGACGAAGCAA TCCAGGGGCTCCG TGCT CGGCGCCCCTGGA TTGCTTCGCTTCGCT RPE_4695 5278598 - 5277924 - | TetR family transcriptional regulator TERM 4746 5278515 - 5278565 + g 78 -13.9 -3.54741 | gap 2, overlap 5278558 CATGCCGCCTTCGGC CGCCGCGTCGCG-GGCCGC-GGCCA GGA TGGCCAGCCGCCTTGCCGCGAGGCG TTTCACGACCTGCTG TERM 4747 5278725 - 5278710 - R 81 -4 -5.0133 | CATGCTCTCAAAAAA CTGAAC ACTT ATTCAG GCGCGCTGACAAGCC RPE_4696 5279087 - 5278770 - | branched-chain amino acid transport TERM 4748 5279039 - 5279007 - G 89 -3.2 -5.31275 | gap 1, overlap 5279008 5279027 GCGCATCAGAAAAAA CCCGCCGAG-CCGCG AAGC CACGGTCACCGCGGT CATCACCGCGAACGC RPE_4697 5279827 - 5279084 - | AzlC-like protein TERM 4749 5279719 - 5279691 - G 77 -5.1 -4.65895 | overlap 5279692 TCGGCCAGCGAAAAA CCCTTCTGCGCAC ACA GCGCGCCGAACGC CATGCCGAACGCCAG TERM 4750 5280120 - 5280137 + G 91 -14.1 -4.28548 | opp_overlap 5280120 CAGCCCACAAAAAAA CGCGGCG TTGC CGCCGCG TTTTCGTAGCTCGAT TERM 4751 5280137 - 5280120 - g 100 -14.1 -5.626 | opp_overlap 5280120 CAGCCCACAAAAAAA CGCGGCG TTGC CGCCGCG TTTTCGTAGCTCGAT RPE_4698 5279856 - 5280146 + | hypothetical protein RPE_4699 5282079 - 5280163 - | ATP-dependent metalloprotease FtsH TERM 4752 5281917 - 5281933 + g 73 -12.3 -3.41051 | opp_overlap 5281917 CGTTGCCCTGAATCA CCACGTC GCG GACGTGG TTCTGATCCACCTCG RPE_4700 5283322 - 5282291 - | tRNA(Ile)-lysidine synthetase-like TERM 4753 5283431 - 5283376 - R 100 -22.1 -3.09635 | gap 2, opp_overlap 5283379 5283384 5283388, overlap 5283380 5283384 5283388 ATTGCGAGGAGCGAA GCG-A-CGAAGCAATCCAGGGGCTGCG TGCT CGGCGCCCCTGGATTGCTTCGCTTCGC TCGCAATGACGGGGA TERM 4754 5283379 - 5283426 + r 100 -22.8 -3.06183 | opp_overlap 5283376 5283380 5283384 5283388, overlap 5283384 5283388 GCGAGGAGCGAAGCG ACGAAGCAATCCAGGGGCTGCG TGCT CGGCGCCCCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 4755 5283425 - 5283380 - R 100 -26.3 -2.55544 | opp_overlap 5283379 5283384 5283388, overlap 5283376 5283384 5283388 CGAGGAGCGAAGCGA CGAAGCAATCCAGGGGCTGCG TGCT CGGCGCCCCTGGATTGCTTCG CTTCGCTCGCAATGA TERM 4756 5283421 - 5283384 - R 95 -19.9 -3.22388 | opp_overlap 5283384 5283379 5283388, overlap 5283380 5283376 5283388 GAGCGAAGCGACGAA GCAATCCAGGGGCTGCG TGCT CGGCGCCCCTGGATTGC TTCGCTTCGCTCGCA TERM 4757 5283384 - 5283421 + r 95 -19.9 -3.19192 | opp_overlap 5283380 5283376 5283384 5283388, overlap 5283379 5283388 GAGCGAAGCGACGAA GCAATCCAGGGGCTGCG TGCT CGGCGCCCCTGGATTGC TTCGCTTCGCTCGCA TERM 4758 5283388 - 5283417 + r 79 -13.5 -3.40788 | opp_overlap 5283384 5283380 5283376 5283388, overlap 5283384 5283379 GAAGCGACGAAGCAA TCCAGGGGCTGCG TGCT CGGCGCCCCTGGA TTGCTTCGCTTCGCT TERM 4759 5283417 - 5283388 - R 79 -13.5 -3.41581 | opp_overlap 5283388 5283384 5283379, overlap 5283384 5283380 5283376 GAAGCGACGAAGCAA TCCAGGGGCTGCG TGCT CGGCGCCCCTGGA TTGCTTCGCTTCGCT RPE_4701 5284493 - 5283483 - | TPR repeat-containing protein TERM 4760 5284023 - 5284056 + g 100 -19.5 -3.51825 | overlap 5284024 CGGCAGCTGTCCGCC GCCGAGCGCCCGCGG CGCG CCGGGGGCGCTCGGG TTCTGATTCGGATCG TERM 4761 5284024 - 5284055 + g 100 -23 -2.70774 | overlap 5284023 GGCAGCTGTCCGCCG CCGAGCGCCCGCGG CGCG CCGGGGGCGCTCGG GTTCTGATTCGGATC TERM 4762 5284590 - 5284611 + r 84 -15.1 -3.25823 | opp_overlap 5284590 GCCAAGCACAAAAAA GCCGGCGTC CGAG GGCGCCGGC TTGCTGTCAAAGCGC TERM 4763 5284611 - 5284590 - R 100 -13.7 -5.37345 | gap 1, opp_overlap 5284590 GCCAAGCACAAAAAA GCCGGCGTCC GAG GG-CGCCGGC TTGCTGTCAAAGCGC RPE_4702 5285133 - 5284636 - | OmpA/MotB domain-containing protein TERM 4764 5284796 - 5284816 + g 70 -10.4 -3.66288 | overlap 5284801 CGCACCGACTGGGCG CGTCGCGC GCCGA GCGCGATG TTGTATTCGCGGGTG RPE_4703 5286295 - 5285459 - | AraC family transcriptional regulator RPE_4704 5286417 - 5287112 + | O-methyltransferase family protein RPE_4705 5287996 - 5287202 - | hypothetical protein RPE_4706 5290481 - 5288139 - | diguanylate cyclase/phosphodiesterase TERM 4765 5289389 - 5289354 - G 76 -14.7 -3.20382 | opp_overlap 5289359 5289360 5289382, overlap 5289359 GTCGAGATCGATGAA CAGAAGCGCGGCGGG CTGCGT CTCGCCGCGGTTCTG CGCGATCGTCAGCAG tolB 5292037 - 5290685 - | translocation protein TolB TERM 4766 5291491 - 5291506 + g 77 -5.4 -4.58395 | CGATGAACACCACGC GGCTGT CGAA ATAGCC TTTTTCGCCGGTGAG TERM 4767 5291713 - 5291745 + g 83 -4.7 -5.08824 | overlap 5291723 TGATGGTCTTCCAGC TCGGAAACTGCGGCG GCA CGTCGATGTTGCTGA TTTTTTCGATGAAGG RPE_4708 5293011 - 5292067 - | putative TolA RPE_4709 5293471 - 5293019 - | biopolymer transport protein ExbD/TolR TERM 4768 5293229 - 5293259 + g 79 -3.9 -4.93296 | overlap 5293230 GTTCAAATACACCTG GCCCTTGACGTTG ACCGA CAGCGTCAGCGGA TTTTTGTCCTGCTCG RPE_4710 5294207 - 5293524 - | MotA/TolQ/ExbB proton channel TERM 4769 5293602 - 5293620 + g 79 -11.8 -3.7941 | CCGCTGCGCCTGGCG GTTCACCT CGG AGGTGAAC TTATTATAGAAGATA RPE_4711 5294665 - 5295066 + | hypothetical protein TERM 4770 5295100 - 5295073 - T 100 -20.6 -4.43911 | AAACGCTAAGCAAAA CCGCCCGGCTGC ATGC GCAACCGGGCGG TGGAACAACTCATCG RPE_4712 5295604 - 5295128 - | hypothetical protein RPE_4713 5296460 - 5295753 - | TetR family transcriptional regulator RPE_4714 5297025 - 5296615 - | DGPFAETKE family protein TERM 4771 5296940 - 5296995 + g 72 -11.6 -3.58343 | gap 1, overlap 5296950 CGGTTGTATTCCATC ATCACCGCGACCGCGTCGGCCGCGGGC ATG GTTC-CGGCCGGCGCGGTCTCGTAGCC TTTCGGGATCATCAG TERM 4772 5296950 - 5296985 + g 89 -19 -2.81966 | gap 1, overlap 5296940 CCATCATCACCGCGA CCGCGTCGGCCGCGGGC ATG GTTC-CGGCCGGCGCGG TCTCGTAGCCTTTCG RPE_4715 5297473 - 5297102 - | hypothetical protein TERM 4773 5298011 - 5298069 + H 93 -7.6 -5.14563 | gap 4, opp_overlap 5298011 ATCGCGCTGCACAAA TCCGCGGTTGGAATGTCGGTCGACG-CGCT GTA AGCGGTGTCGGCAG-CAA-CCAACC-CGGA TTTTTTCATGAGCAG RPE_4716 5298077 - 5298865 + | short-chain dehydrogenase/reductase SDR RPE_4717 5299207 - 5298878 - | prevent-host-death family protein TERM 4774 5299370 - 5299341 - H 78 -9.9 -4.08216 | opp_overlap 5299340 5299341, overlap 5299343 5299363 TCAGCCCGGGCAAAA CAGCGGCGATTCG CCGA CAAAACGCCGCGG GTTTTGGCGCCGGCC TERM 4775 5299368 - 5299343 - H 73 -11.1 -3.63922 | opp_overlap 5299341 5299340, overlap 5299341 5299363 AGCCCGGGCAAAACA GCGGCGATTCG CCGA CAAAACGCCGC GGGTTTTGGCGCCGG RPE_4718 5299536 - 5299847 + | hypothetical protein RPE_4719 5300675 - 5299887 - | inositol-1(or 4)-monophosphatase RPE_4720 5301973 - 5300813 - | Sel1-like protein TERM 4776 5301145 - 5301173 + g 77 -3.7 -4.82901 | CGGCCACCGCCGCCG CCTGCAGCAGCCG CAC CGACTGTTCGAGG TTTTTCTCCACGCCG RPE_4721 5302659 - 5301970 - | thiamine monophosphate synthase TERM 4777 5302127 - 5302109 - G 74 -10.2 -3.80573 | overlap 5302091 CCGACCAGCACGAAA TCGGCGCC GGC GGCGGCGA AATCAAACGCCTCCT TERM 4778 5302633 - 5302620 - G 75 -9.5 -4.03234 | GCGTGGCGAGATAAA GCCGG GGCG CCGGC GGCAAAGGAGGCGGC RPE_4722 5303721 - 5302666 - | fructose-bisphosphate aldolase RPE_4723 5304117 - 5303794 - | transcriptional modulator of MazE/toxin, MazF RPE_4724 5304371 - 5304114 - | hypothetical protein TERM 4779 5304425 - 5304379 - R 76 -8.1 -4.13767 | gap 2, opp_overlap 5304380, overlap 5304380 TTGTCCATGGCAAAA CTCCTCCGTCCGGAGCGTTACAT GTA ACATG-CGCTCCGGACG-AGGAT TTTTCAAGCCGGCAG TERM 4780 5304380 - 5304424 + r 100 -11.6 -4.56597 | gap 1, opp_overlap 5304380 5304379 TGTCCATGGCAAAAC TCCTCCGTCCGGAGCGT TACATGTAACAT GCGCTCCGGACG-AGGA TTTTTCAAGCCGGCA pgk 5305645 - 5304449 - | phosphoglycerate kinase TERM 4781 5304848 - 5304836 - G 75 -9.1 -4.05788 | GGCGGCGAAATGAAA CGCCA CCG TGGCG TCGACCGGCAGGATG TERM 4782 5305089 - 5305103 + g 72 -11.4 -3.62046 | ATCACCGGCCGCGTC GGCGCT TCC AGCGCC TTGTTCAGCGCGTCG TERM 4783 5305534 - 5305556 + g 82 -15.6 -3.35679 | overlap 5305526 GGATGCGCTCGAGCC GGGTGTCGTC GGT GACGACGCCC TTGTCCATCGGCACG RPE_4726 5305956 - 5305642 - | hypothetical protein RPE_4727 5306301 - 5306032 - | hypothetical protein RPE_4728 5307350 - 5306343 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 4784 5307099 - 5307126 + g 70 -12 -3.36749 | gap 1 TTCTTTCCAGGGCAG GGTC-GCGGGGTC CTT GACCGCGCAGACC TTGATCTTGCCCATG RPE_4729 5309469 - 5307478 - | transketolase TERM 4785 5309568 - 5309585 + H 77 -12.7 -3.61356 | GCCGACCTCCAGGCC GCGGCAG CCAG CTGCCGC TTTACGGTGCATAGT RPE_4730 5309706 - 5310077 + | hypothetical protein RPE_4731 5310074 - 5310457 + | hypothetical protein RPE_4732 5311737 - 5310661 - | hypothetical protein TERM 4786 5310939 - 5310889 - G 83 -15.5 -3.59979 | gap 1, opp_overlap 5310889 5310888 5310913 GGTTTCGACCTGAAA CACTTCGAGCTTGGCCAGCACCGC GAGC GCGGCGATCACCA-GCTCGAAGCG CTCTTCCTTGGCGAA RPE_4733 5315445 - 5311774 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4787 5315588 - 5315604 + H 75 -4.3 -4.75404 | overlap 5315591 ATTCGGAGCAGATTG GGGCGTC GAC GGCGTTC TTTTTCGTCAAATTT TERM 4788 5315591 - 5315601 + H 71 -4.6 -4.47707 | overlap 5315588 CGGAGCAGATTGGGG CGTC GAC GGCG TTCTTTTTCGTCAAA RPE_4734 5315737 - 5316108 + | DGPFAETKE family protein TERM 4789 5316994 - 5316978 - g 73 -12.3 -3.35679 | GGCGCTGATCGACAA GGCGATG CGC CATCGCC GCACCGGGCCCTATC RPE_4735 5316133 - 5317434 + | RNA polymerase ECF-subfamily sigma factor TERM 4790 5317711 - 5317726 + G 70 -11.8 -3.39803 | opp_overlap 5317662 CCCTCCCGGCACCTC GCCGCC GCCG GGCGGC TTCTCGGTGTCGCTG RPE_4736 5317493 - 5317894 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 4791 5318956 - 5319005 + G 76 -15.8 -2.88579 | gap 2 GCAATTTGCCGCTCC GCTCGGCGCGCGGTTCGGCATCAC ACGG GTGATGCTG-GCCG-GCGTCGCGC TCTATGCGGGCTTCG TERM 4792 5319286 - 5319307 + G 73 -13.7 -3.15544 | GATCGCGCTGTGCGC CGTCACCGC CGCG GCGGTGGCG TTCGTCACCCTGCGG RPE_4737 5318138 - 5319355 + | Bcr/CflA subfamily drug resistance transporter RPE_4738 5319808 - 5319377 - | hypothetical protein RPE_4739 5320752 - 5319832 - | peptidase U32 TERM 4793 5319945 - 5319965 + g 73 -13.9 -3.14602 | opp_overlap 5319933, overlap 5319942 AGATCGCCGGAAGCG CCGCGGCGG CAT CCGCCGCGC TCTTGCTGCCATCGA RPE_4740 5321820 - 5320843 - | peptidase U32 RPE_4741 5322366 - 5321824 - | hypothetical protein TERM 4794 5322000 - 5321944 - G 81 -10.8 -4.1399 | gap 1 CGATTCAGAGAGAAA GTCGACGCGGGAGTCGTCGATGGCGTT GCGC AACGCCACCACCGCCTCC-ATGTCGCC GTCGACATGAATATC TERM 4795 5322040 - 5322028 - G 72 -6.9 -4.17316 | overlap 5322015 5322030 5322031 ATCGCGCGAAAAGAA CAGCG CGT CGCCG TCATAGGAGCCGTCG TERM 4796 5322250 - 5322234 - G 74 -7.9 -4.22652 | CGAGACGATCGAAAA TGCGCGG ATG CCGCGAA CGAATTTCGCCGAGG RPE_4742 5322477 - 5324000 + | UbiD family decarboxylase RPE_4743 5323997 - 5324599 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RPE_4744 5325220 - 5324618 - | hypothetical protein RPE_4745 5325296 - 5325856 + | hypothetical protein RPE_4746 5325859 - 5326065 + | XRE family transcriptional regulator TERM 4797 5326259 - 5326211 - T 78 -14.6 -3.06133 | gap 1, overlap 5326199 5326214 TAATCGTTGAGCCAA CTACCCTC-AGTCTTTCCGGGGC GTGC GCCCCGGAATGACTCGCGGATGG GTAAGTAACTAGCCG TERM 4798 5326256 - 5326214 - T 75 -14.9 -2.75064 | gap 1, overlap 5326211 TCGTTGAGCCAACTA CCCTC-AGTCTTTCCGGGGC GTGC GCCCCGGAATGACTCGCGGA TGGGTAAGTAACTAG RPE_4747 5327689 - 5326268 - | peptidase U62, modulator of DNA gyrase TERM 4799 5327013 - 5327050 + g 87 -15 -3.84825 | gap 3 TCCAGATTGATCATC GCCTGGCG-GATCGC-GCC GTC GGCGGCG-TCGCGCCAGGC TTTGGTCTCGATGAA RPE_4748 5327810 - 5328034 + | hypothetical protein RPE_4749 5329549 - 5328209 - | hypothetical protein RPE_4750 5330255 - 5329683 - | invasion associated locus B family protein TERM 4800 5329873 - 5329861 - G 77 -6.9 -4.47551 | opp_overlap 5329868 5329869, overlap 5329862 AGGCAACGGACAAAA CCGGC GCG GCCGA CGTCGGCGTTGTCGA TERM 4801 5330161 - 5330141 - G 77 -5.3 -4.65895 | overlap 5330142 5330144 CTGCGCACCCAAAAA CCAGTGCCA GCA CGGCAGCGG CCGCCGCGGCAAGCC RPE_4751 5330635 - 5331486 + | cytochrome-c oxidase TERM 4802 5332183 - 5332199 + G 73 -6.5 -4.371 | opp_overlap 5332164 CGCGCCAGGCATGAC GCTGCAT AAA ATGCCGC TTTTCGTGTGGTCGA TERM 4803 5333122 - 5333092 - g 73 -3.9 -4.5774 | gap 2, overlap 5333093 5333104 5333105 CATCAAGAAGGAAAA GGCCGCCGACAATCC GTG GGGC-GCCGGCG-CC ACCACGCTGGAATGG RPE_4752 5331554 - 5333194 + | cytochrome-c oxidase RPE_4753 5333275 - 5334216 + | protoheme IX farnesyltransferase TERM 4804 5334327 - 5334291 - g 88 -10.1 -4.32177 | gap 1, opp_overlap 5334291 5334292 5334294, overlap 5334292 CCAGCGCAGAAGAAA TCG-CAGCGCGAGCGC TCGATC GCGATCGCGCTGGCGC TGTTGGTGCTGGTGA TERM 4805 5334326 - 5334292 - g 72 -13.6 -3.18824 | gap 1, opp_overlap 5334292 5334291 5334294, overlap 5334291 CAGCGCAGAAGAAAT CG-CAGCGCGAGCGC TCGATC GCGATCGCGCTGGCG CTGTTGGTGCTGGTG RPE_4754 5334228 - 5334401 + | putative CoxF TERM 4806 5334444 - 5334460 + G 81 -10.8 -4.07568 | opp_overlap 5334416 5334442 GGTCCGGACACGACG CCGCGC AACCG GCGCGG TTTTGGCCGCGACAC RPE_4755 5334411 - 5335037 + | cytochrome C oxidase assembly protein TERM 4807 5335642 - 5335660 + G 70 -6.6 -4.2828 | overlap 5335645 5335649 GGGCCTGATCTGCAC CATCGCGC TCG GCGTGCTG TTTTCCTGCGTGCAG RPE_4756 5335103 - 5335960 + | cytochrome c oxidase, subunit III TERM 4808 5335986 - 5336005 + F 81 -12.1 -3.95435 | overlap 5335982 CAACGTGCTACGCTG GGGCGGC CACAGC GCCGCCC TTGTCTTTTGAAGCG RPE_4757 5336134 - 5336550 + | hypothetical protein TERM 4809 5336996 - 5336971 - g 78 -14.7 -3.2963 | AGGATCGCGCGACAA CACCGCTGCGC ACCG GCGAAGCGGTG GAACTGACCGGCTAT RPE_4758 5336547 - 5337332 + | Surfeit locus 1 family protein RPE_4759 5337433 - 5338854 + | threonine synthase TERM 4810 5339096 - 5339054 - g 79 -16.3 -3.03771 | gap 1, overlap 5339056 CGAGATCGTGGAAGA GATCGAGGCGGTCGGCGGCG ACCT CAACGCCG-CCACCTCGACC GAGACCACCGCATAT TERM 4811 5339094 - 5339056 - g 77 -15.3 -3.07522 | gap 1, overlap 5339054 AGATCGTGGAAGAGA TCGAGGCGGTCGGCGGCG ACCT CAACGCCG-CCACCTCGA CCGAGACCACCGCAT TERM 4812 5340037 - 5340091 + G 89 -17.2 -3.5394 | gap 3 CCCTGCTGGAGCGCA GCCGCC-CGGCGGTCGCAGCCCTCGGC AGCG GCCGGGGTCTG-GACA-CCGCGGCGGC TTTCGCGGAAGGTTT RPE_4760 5338851 - 5340140 + | peptidase M16 domain-containing protein TERM 4813 5340255 - 5340274 + G 71 -3.4 -4.62069 | overlap 5340260 ACGGCCTGTTGCTGC GATCGCCG CAGA TGGCGGAC TTTTTGCAGTGGGCG RPE_4761 5340185 - 5340772 + | GCN5-related N-acetyltransferase RPE_4762 5340881 - 5341537 + | hypothetical protein RPE_4763 5342589 - 5342083 - | 4-hydroxybenzoyl-CoA thioesterase TERM 4814 5342689 - 5342719 + r 70 -11.9 -3.17723 | gap 1 CCAGTTGCGGCCATG GGCGC-CCTCGATG ATGG CATCGAGACGCGCC TTCAATTCAGGCTGA RPE_4764 5343543 - 5342665 - | hypothetical protein TERM 4815 5343089 - 5343050 - G 72 -8.5 -4.09243 | overlap 5343051 GACAGCCGCGCAAAA TCGATCGGCACCG-GCGCG GCGT CGCGCGCGGCGGCG-TCGG TGCGCCAGCCGGCCT RPE_4765 5343916 - 5343626 - | plasmid stabilization system protein RPE_4766 5344519 - 5344313 - | hypothetical protein ruvB 5345693 - 5344578 - | Holliday junction DNA helicase B RPE_4768 5346213 - 5345785 - | hypothetical protein ruvA 5346827 - 5346210 - | Holliday junction DNA helicase motor protein ruvC 5347503 - 5346979 - | Holliday junction resolvase TERM 4816 5347586 - 5347565 - R 74 -9.3 -3.85698 | opp_overlap 5347566, overlap 5347546 5347545 5347566 GGCTTGGTCGAGAAA GCGGGCGGC CTCA GCCGCCCAT CTTCGCCATCAGCGC TERM 4817 5347585 - 5347566 - R 70 -12.8 -2.91276 | opp_overlap 5347566, overlap 5347546 5347545 5347565 GCTTGGTCGAGAAAG CGGGCGGC CTCA GCCGCCCA TCTTCGCCATCAGCG RPE_4771 5348321 - 5347575 - | hypothetical protein TERM 4818 5349045 - 5349070 + G 83 -12.5 -4.15565 | gap 1, overlap 5349046 TCGACCATCGAGGCG GCGCGCGCCGGC GCC GCCGGC-CGCGG TTTTGCGGTGGTCGC TERM 4819 5349046 - 5349069 + G 78 -16 -3.09018 | gap 1, overlap 5349045 CGACCATCGAGGCGG CGCGCGCCGGC GCC GCCGGC-CGCG GTTTTGCGGTGGTCG RPE_4772 5348529 - 5350283 + | methyl-accepting chemotaxis sensory transducer RPE_4773 5350614 - 5352440 + | radical SAM domain-containing protein TERM 4820 5352585 - 5352618 + T 70 -7.4 -4.07687 | gap 1 GAGCAGCGCGAAGTG CGCTG-CGCCGCG CCCGGGACA CGCGGCCTCAGCG TTTTGCAGAACAACT TERM 4821 5352663 - 5352647 - T 83 -9.3 -4.28774 | opp_overlap 5352651 5352654 CTACTCAACCCAAAA CTCCGGC AGC GCCGGCG TGAGCCGGCCGCCGA TERM 4822 5352651 - 5352695 + T 70 -7.5 -4.07568 | opp_overlap 5352647, overlap 5352654 TCAACCCAAAACTCC GGCAGCGCCGGCGTGAGCCGG CCG CCGATCCGCACCGGCGCGATC TTTTGCGCAAGCCCG RPE_4774 5353456 - 5352632 - | hypothetical protein RPE_4775 5354045 - 5353458 - | 5-formyltetrahydrofolate cyclo-ligase TERM 4823 5353954 - 5353926 - G 78 -13.7 -3.60475 | opp_overlap 5353934 AATGTCGATCGGAAA CGGCCGCGCCGCC AGC GCCAGCGCCGCCG CCTGGCGCTGCGGTT TERM 4824 5353934 - 5353967 + g 77 -15.4 -3.05596 | opp_overlap 5353926 TCGGAAACGGCCGCG CCGCCAGCGCCA-GCG CCGC CGCCTGGCGCTG-CGG TTCACTCAGCGCGTC TERM 4825 5354364 - 5354388 + r 89 -12.8 -4.15044 | opp_overlap 5354364 GGCAGACGCAAAAAA GCCGGCACGA GACCA TCGCGCCGGC TTTCTTGAAACGGGA TERM 4826 5354388 - 5354364 - R 100 -15 -5.1287 | opp_overlap 5354364 GGCAGACGCAAAAAA GCCGGCACGA GACCA TCGCGCCGGC TTTCTTGAAACGGGA RPE_4776 5354910 - 5354416 - | H+-transporting two-sector ATPase, B/B' subunit RPE_4777 5355460 - 5354915 - | H+-transporting two-sector ATPase, B/B' subunit RPE_4778 5355741 - 5355514 - | F0F1 ATP synthase subunit C RPE_4779 5356530 - 5355781 - | F0F1 ATP synthase subunit A RPE_4780 5356975 - 5356592 - | FoF1 ATP synthase, subunit I TERM 4827 5357157 - 5357132 - H 76 -6.7 -4.39571 | opp_overlap 5357150, overlap 5357134 5357147 TGCAGAAATCCAAAA CTGCGCGCCGA CTAA TCGTCGCACTG CAGCGAGCGGTCGCG TERM 4828 5357758 - 5357735 - g 73 -5.9 -4.31692 | opp_overlap 5357705, overlap 5357723 AATCTACCAGCAAAA CCGGCAGCA TGCGCT CGATGCCGG GGTGTTCGGCTCGCC RPE_4781 5357253 - 5357876 + | DSBA oxidoreductase TERM 4829 5358053 - 5358078 + G 77 -5.3 -4.65916 | opp_overlap 5358046, overlap 5358054 5358055 ACCGAGAACGGCCGC TATTCGCTGGC GCCG GCCAGCGACGG TTTTCTTAGGCTCGA RPE_4782 5357924 - 5358523 + | hypothetical protein RPE_4783 5358691 - 5359164 + | hypothetical protein TERM 4830 5359352 - 5359295 - T 93 -19.3 -3.23711 | gap 3, overlap 5359287 5359296 TGGATAACGCAGTAA CCGGGGTCCCGGGTCTGCGAAGCGGCAT GAAGA ATGCCGCATCGC-G-CCCGGGA-CACGG TGAAATTCGGCGTCA TERM 4831 5359352 - 5359296 - T 90 -19.5 -2.53905 | gap 2, overlap 5359287 5359295 GGATAACGCAGTAAC CGGGGTCCCGGGTCTGCGAAGCGGCAT GAAGA ATGCCGCATCGC-G-CCCGGGACACGG TGAAATTCGGCGTCA TERM 4832 5359411 - 5359376 - T 100 -21.2 -4.13767 | opp_overlap 5359382, overlap 5359377 5359379 GGCGTCACCCCAAAA GCAGAACGGCCGCGGA TTGC TCCGCGGCCGTTCCGT CCTGGATCGAACGGG TERM 4833 5359410 - 5359377 - T 100 -24.7 -3.08046 | opp_overlap 5359382, overlap 5359376 5359379 GCGTCACCCCAAAAG CAGAACGGCCGCGGA TTGC TCCGCGGCCGTTCCG TCCTGGATCGAACGG TERM 4834 5359408 - 5359379 - T 100 -23.7 -3.09831 | opp_overlap 5359382, overlap 5359377 5359376 GTCACCCCAAAAGCA GAACGGCCGCGGA TTGC TCCGCGGCCGTTC CGTCCTGGATCGAAC TERM 4835 5359382 - 5359405 + T 93 -19.6 -3.10164 | opp_overlap 5359379 5359377 5359376 ACCCCAAAAGCAGAA CGGCCGCGGA TTGC TCCGCGGCCG TTCCGTCCTGGATCG RPE_4784 5361111 - 5359447 - | general substrate transporter TERM 4836 5361616 - 5361638 + G 78 -6.2 -4.58663 | CTGGTCCTGCTCGAC CTGTCGATGC CGG GCATCAGCGG TTTTTCCGGGCTGAT RPE_4785 5361436 - 5362107 + | two component LuxR family transcriptional regulator RPE_4786 5365768 - 5362268 - | periplasmic sensor hybrid histidine kinase TERM 4837 5364030 - 5364009 - G 74 -12.3 -3.58343 | gap 1, opp_overlap 5364009 TGCAGCAGCTCGAAA TCG-GCCGGC GAG GCCGGCTCGA TATTGACGCGGCGAT TERM 4838 5365929 - 5365907 - R 100 -22 -5.00884 | overlap 5365921 AGGTCGCGCAAAAAA GGGCGCCGGG AAA CCCGGCGCCC TGATCGAGTGGCGCG RPE_4787 5367213 - 5365984 - | 5-aminolevulinate synthase RPE_4788 5368457 - 5367393 - | beta-lactamase domain-containing protein TERM 4839 5368746 - 5368766 + r 85 -15.4 -3.53444 | opp_overlap 5368729 5368746 TCGACCCACAAAAAA GGGCCGGC GCAAG GCCGGCCC TTTCGAAAACCCTCA TERM 4840 5368766 - 5368746 - R 100 -15.4 -5.28176 | opp_overlap 5368746, overlap 5368729 TCGACCCACAAAAAA GGGCCGGC GCAAG GCCGGCCC TTTCGAAAACCCTCA TERM 4841 5368793 - 5368776 - R 70 -7.7 -4.07568 | CGGCCCTTTCGAAAA CCCTCAA TCAG CTGAGGG CATCAGATCGCGTAA RPE_4789 5369498 - 5368812 - | OmpA domain-containing protein RPE_4790 5369870 - 5370085 + | hypothetical protein TERM 4842 5370779 - 5370761 - g 74 -8 -4.2828 | overlap 5370764 GCTCACCGACGAAAA CCAGCGCG AGG CGCGGCGG ATGTGCGAGGCGTTC RPE_4791 5370087 - 5370848 + | ABC transporter related RPE_4792 5370845 - 5371723 + | hypothetical protein TERM 4843 5372555 - 5372524 - g 71 -14.5 -2.5474 | gap 1, overlap 5372523 5372521 5372526 GTTTATGGAGAATAT CAGCGATCCG-CGG CTGAT CCGGCGGATCGCCG CCGAGACCGGCGCCA RPE_4793 5371736 - 5372686 + | periplasmic solute binding protein TERM 4844 5372707 - 5372739 + F 89 -15 -3.93216 | gap 2, overlap 5372708 CGACGTCTGCCCGGT CC--CGGAACGCCTGC TCC GCAGGCGTTCCGCTGG TTGTTATCGTTTCCG TERM 4845 5372708 - 5372736 + F 91 -18.9 -3.01676 | overlap 5372707 GACGTCTGCCCGGTC CCGGAACGCCTGC TCC GCAGGCGTTCCGC TGGTTGTTATCGTTT TERM 4846 5372755 - 5372798 + F 76 -15.9 -2.53876 | TTGTTATCGTTTCCG CCTGGCCTCGGGGAGCCGC TGTTGC GCGCCTCCGCGGGGCCAGA TGCGTTCGCCTGGAG TERM 4847 5373124 - 5373156 + G 81 -5.7 -4.72272 | gap 3, opp_overlap 5373122, overlap 5373112 5373136 ATCGTCGAGACCACC GGTCT-CGCCGATCCG GCGC CGG-T-GGCGCAGACC TTTTTCGTCGACGAG RPE_4794 5372824 - 5373876 + | cobalamin synthesis protein, P47K RPE_4795 5373873 - 5374892 + | WD-40 repeat-containing protein RPE_4796 5374974 - 5375312 + | hypothetical protein TERM 4848 5375631 - 5375592 - T 73 -12.9 -3.13403 | gap 2, overlap 5375590 TTCCTCGCAGCAAGA TTCCGGGTTCGCACGCGGC TGAC GCCGCGCGCC--CCCGGAA TGACGCGTCAATCTC RPE_4797 5376703 - 5375672 - | hypothetical protein TERM 4849 5375921 - 5375909 - G 79 -3.3 -5.00884 | ATCGCCCGCAAAAAA GCCGT TGA ACGTC GTATTGACCCCATCA RPE_4798 5377102 - 5376815 - | hypothetical protein TERM 4850 5377036 - 5376978 - G 78 -14.6 -3.33815 | opp_overlap 5376985 5376986 5377018 5377021, overlap 5376979 ATTCCGGCGAAGTAA GCCGACCTCTCGAGCAGGATGACGTTTC TTC GAAACGTCATCCTGCTCGAGCTTTTTGA TTGAGCATGATCTTT TERM 4851 5377035 - 5376979 - G 85 -18.1 -2.60075 | opp_overlap 5376985 5376986 5377018 5377021, overlap 5376978 TTCCGGCGAAGTAAG CCGACCTCTCGAGCAGGATGACGTTTC TTC GAAACGTCATCCTGCTCGAGCTTTTTG ATTGAGCATGATCTT TERM 4852 5376985 - 5377029 + g 100 -28.9 -4.86621 | opp_overlap 5376979 5376978, overlap 5376986 5377018 5377021 CGAAGTAAGCCGACC TCTCGAGCAGGATGACGTTTC TTC GAAACGTCATCCTGCTCGAGC TTTTTGATTGAGCAT TERM 4853 5376986 - 5377028 + g 100 -32.4 -3.5125 | opp_overlap 5376979 5376978, overlap 5376985 5377018 5377021 GAAGTAAGCCGACCT CTCGAGCAGGATGACGTTTC TTC GAAACGTCATCCTGCTCGAG CTTTTTGATTGAGCA TERM 4854 5377208 - 5377262 + r 82 -15 -3.31157 | opp_overlap 5377239, overlap 5377209 5377235 CAGGCTGCTTTTGGA ACG-GTCCCGGCTCGCGGAGCAGCGT CAAGA ACGCTGTCCCGCGT-CCGGGACACGA TTCCTCTCGTCATTC TERM 4855 5377209 - 5377261 + r 86 -18.5 -2.58212 | opp_overlap 5377239, overlap 5377208 5377235 AGGCTGCTTTTGGAA CG-GTCCCGGCTCGCGGAGCAGCGT CAAGA ACGCTGTCCCGCGT-CCGGGACACG ATTCCTCTCGTCATT TERM 4856 5377261 - 5377239 - R 70 -9.9 -3.63991 | gap 1, opp_overlap 5377209 5377208 5377235 GAGCAGCGTCAAGAA CGCTGTCCCG CGTC CGGGACA-CG ATTCCTCTCGTCATT TERM 4857 5377472 - 5377442 - R 75 -13.9 -3.05384 | opp_overlap 5377465, overlap 5377447 GTGCCCCGGACGCAA CGCAACGCGCCGC GCTGA GCGGCGTGGTGCG CTGCAGATCCGGGGC RPE_4799 5379011 - 5377584 - | homospermidine synthase TERM 4858 5378385 - 5378414 + g 81 -7.7 -4.58283 | GCGCTGGGTGTCGCG CTCGGCGATGTGG ATGC CCTTGACGCCGAG TTTTTGCGCCAGTTG TERM 4859 5378669 - 5378652 - G 71 -9.1 -3.81488 | CTTGTCGAAATAGAA GCCGAGC CAGG GCTCGAC CACGGTGTCGATATA TERM 4860 5378785 - 5378758 - G 71 -3.2 -4.66163 | overlap 5378760 AGGTTGACGCAAAAA CCCTGGCCGCCG CCTT CGGTGAGCAGCG GGACCAGCAATTCGC TERM 4861 5379060 - 5379034 - R 74 -13.6 -2.84504 | overlap 5379031 5379029 AGCTCCGAAACAGGA CGGGCGGGACCA CTT CGGCTCCGCCCG CGCAATTGACGACAA RPE_4800 5379506 - 5379099 - | endoribonuclease L-PSP TERM 4862 5379415 - 5379445 + g 73 -11 -3.63744 | opp_overlap 5379405 5379413 5379412 5379407, overlap 5379414 ACGAAGACGAAATCG CCGTCGACCACGGC GCG GCTGTAGCCGGCGG TCTTTTCGAAGGGCG TERM 4863 5379729 - 5379752 + r 74 -11.6 -3.53012 | opp_overlap 5379714 5379711, overlap 5379730 5379746 GCTTGGCGAGCGGCC GCCGCGGCCG CAGC CGGCTGCGGG TTTCCGGCACGGCGG TERM 4864 5379730 - 5379751 + r 78 -15.1 -2.71712 | opp_overlap 5379714 5379711, overlap 5379729 5379746 CTTGGCGAGCGGCCG CCGCGGCCG CAGC CGGCTGCGG GTTTCCGGCACGGCG RPE_4801 5380397 - 5379810 - | GCN5-related N-acetyltransferase TERM 4865 5380552 - 5380533 - R 74 -15 -2.63631 | TCAATGTGGAGAGGA GGAGCCGG CGCA CCGGCTCC GCAACAGTCGGACGA RPE_4802 5381724 - 5380582 - | ornithine decarboxylase TERM 4866 5381407 - 5381434 + g 71 -12.7 -3.27923 | overlap 5381410 GCCGATGCCCAGCGC GAAGGCGCGCG CGATGT CGCGCTCCTTC TTGATGGTGTTGCCA RPE_4803 5382696 - 5382436 - | hypothetical protein TERM 4867 5382765 - 5382753 - H 78 -6.9 -4.57341 | overlap 5382754 5382755 AATCTCTCCGAAAAA CGCCG CTG CGGCA AGCGCCAACAGCCGG TERM 4868 5383975 - 5383958 - g 75 -9.1 -4.12188 | gap 1, opp_overlap 5383961 5383962 CTACTACGCCGAAAA GCTGCGGC AGC GCCGC-GC CGATTTCGACGACTC RPE_4804 5382900 - 5384990 + | peptidyl-dipeptidase Dcp RPE_4805 5384990 - 5385637 + | hypothetical protein TERM 4869 5386029 - 5386072 + G 80 -9.6 -4.18494 | gap 1, overlap 5386029 5386032 CGTGTCGGCGATGAT G-CAGGCGCTGATGGCGGT CGCAATT GTCGGCATCGGCGCCTGGC TTTTGAATGCGACTG RPE_4806 5385634 - 5386740 + | high-affinity nickel-transporter TERM 4870 5386845 - 5386860 + F 75 -11.8 -3.66784 | opp_overlap 5386843 GCGACGGATAGCAGC GGCGGC GAGG GCCGCC TTGTCTTGACAATAA hemH 5386904 - 5387941 + | ferrochelatase TERM 4871 5388341 - 5388376 + G 78 -6 -4.62302 | gap 1, opp_overlap 5388349 5388350, overlap 5388342 CAGGAGGTGATCAGC CGCGACAACG-CCACCG TGA CGGTGGATGGCGTCGCC TTTTTCCAGGTGTTC RPE_4808 5388098 - 5389093 + | band 7 protein RPE_4809 5389194 - 5389631 + | hypothetical protein TERM 4872 5389731 - 5389769 + T 91 -17.4 -3.28712 | TGGTGCGCTGCTGAT CCGGGGCCGTTACGGACG CTG CCTTCGTTACGGTCCCGG TTCTGCGGCGCGGCA RPE_4810 5390246 - 5389875 - | hypothetical protein recR 5390904 - 5390299 - | recombination protein RecR RPE_4812 5391224 - 5390907 - | hypothetical protein TERM 4873 5391143 - 5391163 + g 73 -9 -4.00469 | overlap 5391123 TGCCTTCGACCTCGA TGCGGTCG AGCTC CGACTGCA TTTCCTTCATCTTCG TERM 4874 5391279 - 5391316 + r 72 -7.7 -4.17762 | gap 1, opp_overlap 5391272, overlap 5391274 5391273 5391280 GTCATCAATCGTCGT TGTCGACATTTTCGGACG GAT CGCCCGAGAA-GTCGCCG TTATTTTCAAGCGTA RPE_4813 5393157 - 5391268 - | DNA polymerase III subunits gamma and tau RPE_4814 5393583 - 5394008 + | histidine triad (HIT) protein TERM 4875 5393995 - 5394019 + F 83 -12.1 -4.08692 | overlap 5393989 CGTTGCGCCGCCAGA TCTGGCTCGGT TGA ACCGCGCCGGA TTTTCCGGCAAGTTG RPE_4815 5394117 - 5395073 + | NUDIX hydrolase RPE_4816 5395082 - 5396014 + | ribokinase-like domain-containing protein RPE_4817 5396582 - 5396058 - | hypothetical protein TERM 4876 5396421 - 5396459 + g 100 -18.2 -3.83844 | opp_overlap 5396393 GCGCGGCACGCTGAC GCTGCGAATGCCGGCG CGCGCGA CGTCGGCGTTCGCGGC TTCTTGCTTGGTCGG RPE_4818 5399320 - 5396705 - | ATP-dependent helicase HrpB TERM 4877 5397581 - 5397539 - G 84 -16.9 -3.08992 | gap 1, opp_overlap 5397579 AGCCACCGCAAGATA CGGCGCCCGCGCCAGCGCCG CGCT CGGCTCCACCGCGG-CGCCG CGGCCATTGGCCAGC TERM 4878 5397579 - 5397617 + g 72 -11.8 -3.61398 | gap 2, opp_overlap 5397539 5397602 GGCTCCACCGCGGCG CCGCGGCCATTGGCCAGC ACGAA GCTG-CCATT-GCCGCGG TTCTTCGCCACCCGA TERM 4879 5397975 - 5398008 + g 78 -10.1 -4.15565 | gap 1 TCGACGATCATCCGC GCCAGC-CGCGGCGGC AGC GCCAGCGCGCGCAGGC TTTTGCCCTCGTCGG TERM 4880 5398257 - 5398314 + g 72 -11.4 -3.53444 | gap 5, opp_overlap 5398249, overlap 5398258 TAGCACACGCCGGGC TCGATGCG-GCCGGCGCG-GCCGCGG-CG CTGAT CGACCGCGGCGCGCGA-GGCACGCA-CGG TTTCCAGGCGCGTCA TERM 4881 5398623 - 5398592 - G 73 -3.6 -4.58395 | gap 1, opp_overlap 5398614, overlap 5398604 GGCACCCGGCAAAAA CGCCA-GCACAGACC CCG GATCGGCGCGCAGCG CTTTGGCGATCGCCT TERM 4882 5398806 - 5398789 - G 73 -6.3 -4.33274 | gap 1 CCGACATCACCAAAA TGCGC-AG ATC CTCGCGCA GCCCCTGCTGCGCGT TERM 4883 5399705 - 5399717 + G 80 -9.1 -4.28111 | AGTTCGCGCGGCCGT TCCGG ATG CCGGA TTTCTTCCTGCTGTC RPE_4819 5399524 - 5400582 + | acyltransferase 3 RPE_4820 5401349 - 5400756 - | hypothetical protein TERM 4884 5402077 - 5402061 - g 82 -12.3 -3.92373 | GAGGTGATCGAGAAA TTCGGCG TGC CGCCGAA CAAGGTGGTCGAGGT TERM 4885 5402593 - 5402573 - g 91 -15.4 -3.9279 | ATCGAAGGCGACAAA CCCGCGGG TCAAG CCCGCGGG TGACGGCGGGAAGCG RPE_4821 5401497 - 5404535 + | DNA polymerase I pyrE 5404555 - 5405199 + | orotate phosphoribosyltransferase TERM 4886 5405556 - 5405586 + G 79 -11 -3.91897 | overlap 5405557 AGCCGGCCCCGGCGC CTCGCCCCGTCTCC ACC GGAGGCGGGCCGGC TTTCTGCGTCCGCAG TERM 4887 5405557 - 5405585 + G 74 -14.5 -2.94924 | overlap 5405556 GCCGGCCCCGGCGCC TCGCCCCGTCTCC ACC GGAGGCGGGCCGG CTTTCTGCGTCCGCA RPE_4823 5405339 - 5406127 + | hypothetical protein RPE_4824 5406561 - 5406130 - | hypothetical protein TERM 4888 5406191 - 5406232 + g 78 -10 -4.07885 | gap 2, overlap 5406189 5406190 TTCTCCTCGATCGCC GCGCGCGCCGCCG-C-CCGG TTTT CCGGGGTCAGCAGCCCGCGC TTTTCGGCGAGAATC RPE_4825 5406618 - 5406983 + | hypothetical protein RPE_4826 5407014 - 5409530 + | glycogen/starch/alpha-glucan phosphorylase TERM 4889 5409557 - 5409578 + F 100 -14.4 -4.25104 | ACATCACGACTTTTA GGGCGGCC CCTTGC GGCCGCCC TTTTCATGACGCCCA RPE_4827 5409664 - 5410497 + | hypothetical protein TERM 4890 5410495 - 5410549 + F 86 -17.8 -2.62184 | gap 1 GCCTACTTTAAGGCT TGAGCGGTCCAGCGATGCCGCGCCG TCGGTT CGGCGCGGCGTCGAAGGGCCGG-CA TACTCTCGCGCGCAG RPE_4828 5410509 - 5411165 + | ChaC-like protein RPE_4829 5411959 - 5411159 - | phospholipid/glycerol acyltransferase TERM 4891 5411962 - 5411950 - G 77 -4.1 -4.72029 | GCGAACGCAAGAAAA TCGAC GTC ATCGA AGATCCGATCAATTG RPE_4830 5412672 - 5411971 - | hypothetical protein RPE_4831 5413837 - 5412866 - | hypothetical protein RPE_4832 5414489 - 5413830 - | cell division ATP-binding protein FtsE TERM 4892 5414517 - 5414562 + H 86 -13.9 -3.90112 | gap 1, overlap 5414502 TCGACGGTGGCGCAA CGGCGGGTCTCGAGGCGCTGGT GCC GCCGGCGATTTG-GCCCCGCCG TTTCCTTCCGGCGCC TERM 4893 5415465 - 5415451 - g 85 -7.8 -4.7629 | opp_overlap 5415451 5415457, overlap 5415452 CGACGAATCGAAAAA GGCAGC CGA ACTGCC GCGGCTGCGATTCGT RPE_4833 5414678 - 5415658 + | Zinc finger/thioredoxin putative RPE_4834 5415661 - 5416032 + | response regulator receiver protein RPE_4835 5416175 - 5417809 + | hypothetical protein RPE_4836 5417790 - 5419043 + | hypothetical protein TERM 4894 5419039 - 5419021 - f 88 -17.4 -3.02511 | overlap 5418980 CGCAGCGCGCCAAGA GCCGCGCG GAA CGCGCGGC GTGATACGGTTGCCA RPE_4837 5419177 - 5420664 + | pyridoxal-dependent decarboxylase RPE_4838 5423209 - 5420651 - | hypothetical protein TERM 4895 5422130 - 5422153 + g 82 -11.8 -4.09685 | gap 1, opp_overlap 5422119 5422118 5422135, overlap 5422132 5422133 AAATTGCGGCGGCTC GAA-CAGCGGC CGC GCCGCTGGTTC TTTTCCGCCCTCGGC TERM 4896 5422132 - 5422150 + g 85 -10.2 -4.17762 | opp_overlap 5422119 5422118 5422135, overlap 5422130 5422133 ATTGCGGCGGCTCGA ACAGCGGC CGC GCCGCTGG TTCTTTTCCGCCCTC TERM 4897 5422133 - 5422149 + g 73 -13.7 -3.10175 | opp_overlap 5422119 5422118 5422135, overlap 5422132 5422130 TTGCGGCGGCTCGAA CAGCGGC CGC GCCGCTG GTTCTTTTCCGCCCT RPE_4839 5423340 - 5423798 + | carboxymuconolactone decarboxylase RPE_4840 5425289 - 5424024 - | diaminopimelate decarboxylase TERM 4898 5425237 - 5425206 - G 75 -13 -3.45023 | gap 1, overlap 5425207 CGAGTAGCAGTAGAA CGGC-GTGCCGACGG CCT CCGCCAGCACCGCCA AATTCACCGCCTCGG RPE_4841 5425564 - 5425313 - | hypothetical protein TERM 4899 5425425 - 5425482 + g 77 -16.2 -2.71712 | gap 2, overlap 5425425 TTGCTCGCCGGGTCG CCGGGTT-GAGGCTCC-ACCGTCGCCGC AGCC GCGGCGCCGGGAGGCGCGTCGAGCCCGG CTTTGCGGCCGCAGC TERM 4900 5425604 - 5425625 + r 85 -15.9 -3.53091 | opp_overlap 5425602 5425599 AGCATACAAAGATTG CCCGGCTCT GGCG AGAGCCGGG TTTCGGCCAAAGCCT RPE_4842 5427098 - 5425644 - | argininosuccinate lyase RPE_4843 5427164 - 5427838 + | redoxin domain-containing protein TERM 4901 5428189 - 5428173 - g 71 -9.4 -3.87373 | overlap 5428182 TACATCGTCTACAAA TCGCGC AAACA GCGCGA CAGCGTGATGGCCAA RPE_4844 5427951 - 5428310 + | hypothetical protein RPE_4845 5428523 - 5428323 - | hypothetical protein TERM 4902 5428408 - 5428421 + g 74 -2.3 -4.74706 | overlap 5428390 5428409 5428417 GCCGCGCCGAGCAGC GTCGC GACC GCGAA TTTTTCGCTGTTGGC RPE_4846 5428878 - 5428669 - | hypothetical protein RPE_4847 5430006 - 5429125 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 4903 5430086 - 5430134 + r 100 -17.5 -3.81146 | gap 1, opp_overlap 5430115 5430116, overlap 5430087 5430090 ATTGTCCGGCCGGTC GGATCGCGGCGCGTCGCGCGAT GCAGGA ATCGC-CGACGCGCCGCCGTCG TTGTTACTTCCCGAG TERM 4904 5430087 - 5430133 + r 93 -21 -2.88366 | gap 1, opp_overlap 5430115 5430116, overlap 5430086 5430090 TTGTCCGGCCGGTCG GATCGCGGCGCGTCGCGCGAT GCAGGA ATCGC-CGACGCGCCGCCGTC GTTGTTACTTCCCGA TERM 4905 5430090 - 5430131 + r 91 -18.9 -2.98947 | opp_overlap 5430115 5430116, overlap 5430087 5430086 TCCGGCCGGTCGGAT C-GCGGCGCGTCGCGCGAT GCAGGA ATCGC-CGACGCGCCGCCG TCGTTGTTACTTCCC RPE_4848 5431085 - 5430138 - | electron transfer flavoprotein, alpha subunit TERM 4906 5430636 - 5430654 + g 71 -3 -4.64598 | CGCGGCGAAGGTCGA GGTGCGCA CCG TGATCACC TTTTTGGCGTCCTTC RPE_4849 5431834 - 5431085 - | electron transfer flavoprotein beta-subunit TERM 4907 5431204 - 5431229 + g 71 -12.5 -3.30124 | overlap 5431188 CCAGACGCGGCGTGA GATCGACGCCG TAGT CGGCGGCGGTC TTCTCGGCGATCGGC RPE_4850 5432517 - 5431945 - | ATP--cobalamin adenosyltransferase RPE_4851 5432757 - 5432551 - | hypoxia induced protein region RPE_4853 5434850 - 5433690 - | histidine kinase RPE_4852 5432870 - 5433763 + | ribonuclease BN TERM 4908 5433825 - 5433771 - GT 70 -12.2 -3.21099 | overlap 5433755 5433772 CGGCTTGAGCAGGAA GGCGTCGGCGCCGGCCGCG-CG-CGAGG CGG CCTCGTCGTCGCTGC-GGC-CCGACACG CCGATGATCGCAACC TERM 4909 5433824 - 5433772 - GT 76 -15.7 -2.52516 | overlap 5433755 5433771 GGCTTGAGCAGGAAG GCGTCGGCGCCGGCCGCG-CG-CGAGG CGG CCTCGTCGTCGCTGC-GGC-CCGACAC GCCGATGATCGCAAC TERM 4910 5434819 - 5434859 + gT 72 -7.4 -4.13767 | gap 1, opp_overlap 5434797 5434794, overlap 5434811 5434820 5434825 ACCGTCTCGACCACG CCGGGGCCGGCAGCGCCGG CGCG CCGGCGCA-TCGGTTTCGA TTTTGGGGTGCGCGC TERM 4911 5434825 - 5434853 + gT 77 -10.2 -3.93061 | gap 1, opp_overlap 5434797 5434794, overlap 5434811 5434820 5434819 TCGACCACGCCGGGG CCGGCAGCGCCGG CGCG CCGGCGCA-TCGG TTTCGATTTTGGGGT RPE_4854 5436036 - 5435155 - | glutamyl-Q tRNA(Asp) synthetase TERM 4912 5436019 - 5435996 - G 72 -4.4 -4.45083 | overlap 5435997 5435998 CCGAGATGCAGAAAA CCGTTCGGCG ACGG CGCGAAGCGG AACACGGGGCGCGGC RPE_4855 5436074 - 5436736 + | HhH-GPD TERM 4913 5439356 - 5439371 + G 70 -6 -4.258 | opp_overlap 5439355 5439356, overlap 5439357 TCGCGCTGGTGAAAT GGCCGC TGAA GCGGCA TTTGTTCGTCGATCC RPE_4856 5436892 - 5439615 + | hypothetical protein TERM 4914 5439690 - 5439725 + G 71 -9.6 -3.86346 | gap 1, overlap 5439691 ATCCCTTTCCTCGCA CCGC-CGTGCACCGTGG GCA CCGCGGTGTCCGAGCGC TTTCTCGAGCGGTCG RPE_4857 5439624 - 5440199 + | hypothetical protein RPE_4858 5441010 - 5440180 - | hypothetical protein RPE_4859 5441698 - 5441096 - | hypothetical protein RPE_4860 5442027 - 5441695 - | hypothetical protein RPE_4861 5442550 - 5442281 - | hypothetical protein RPE_4862 5443061 - 5442582 - | response regulator receiver protein RPE_4863 5445392 - 5443221 - | PAS/PAC sensor hybrid histidine kinase TERM 4915 5443904 - 5443948 + g 72 -11.4 -3.55444 | opp_overlap 5443893, overlap 5443896 5443895 CATATTCGCCGGCGG CCGGCA-TTTCCGGCCGGCTGG GCG CC-GCCAGCCGGACATTGGCGG TTTCCACCGTCAGCG TERM 4916 5444198 - 5444230 + g 70 -13.4 -3.01791 | gap 1, opp_overlap 5444191 5444182 CCAGCAATTGCGCCG TCAGCGTCGC-GCCG CGCT CGGCCGCGGCGCGGA TATTGGCCAGCCGGT TERM 4917 5445505 - 5445461 - H 70 -13 -2.87211 | overlap 5445464 AGCCGGCCCGAGAGA GAAGGGCCTCGCCTCC TAGGGGCAGGGGG AGAGGCGAGACCCTTC GCCGCGCTTCAACAT TERM 4918 5445663 - 5445630 - H 100 -23.9 -2.52464 | opp_overlap 5445633, overlap 5445633 GTTCGTCGCAATGCA GAAGGGCGCGCCGGC TGTC GCCCGCGCGCCCTTC CCTCGTCTCGCTGAT TERM 4919 5445660 - 5445633 - H 100 -19.8 -3.41878 | opp_overlap 5445633, overlap 5445630 CGTCGCAATGCAGAA GGGCGCGCCGGC TGTC GCCCGCGCGCCC TTCCCTCGTCTCGCT TERM 4920 5445633 - 5445660 + H 95 -19.8 -3.11812 | opp_overlap 5445633 5445630 CGTCGCAATGCAGAA GGGCGCGCCGGC TGTC GCCCGCGCGCCC TTCCCTCGTCTCGCT RPE_4864 5445884 - 5446249 + | PRC-barrel domain-containing protein TERM 4921 5446382 - 5446327 - T 88 -16.3 -3.27774 | gap 3, overlap 5446323 TACTCTAATCAGCAA CGCCGGGCGAGAGTC-ACCTCTCCCCGC TGC GCGGGGAGAGGTCGA-TC-CGGCAAGCG CAGCTTGGCGGATCG TERM 4922 5446585 - 5446550 - T 93 -18.4 -3.28712 | gap 1, opp_overlap 5446540 CTCGCTGCGCGAGAA CGTCGACCTCTCCCCGC GCA GCGGGGAGAGGT-GAGG ACTGTGCGGCGCCAT RPE_4865 5448227 - 5446611 - | alpha amylase, catalytic region TERM 4923 5447054 - 5447079 + g 70 -5.9 -4.17048 | overlap 5447057 GGGTGCGGCAGCCGT CGCGGCCGAGG CCGA CCCCGGGCACG TTCTTTTCGAACGGA RPE_4866 5448599 - 5449126 + | hypothetical protein TERM 4924 5449152 - 5449178 + F 100 -22.4 -4.55118 | opp_overlap 5449152 GCTCGCCAACCGAAA CGCCGGATGGAC CTG GTCCATCCGGCG TTTTCTCTGCAATTC TERM 4925 5449178 - 5449152 - f 100 -22.4 -3.75153 | opp_overlap 5449152 GCTCGCCAACCGAAA CGCCGGATGGAC CTG GTCCATCCGGCG TTTTCTCTGCAATTC RPE_4867 5449320 - 5449901 + | cytochrome c family protein RPE_4868 5450327 - 5449989 - | DNA polymerase beta subunit TERM 4926 5450230 - 5450254 + g 70 -3.6 -4.49906 | gap 2, opp_overlap 5450219, overlap 5450237 AATAGCGCAGCCACA CCGAATTGCCGC AGC GCGG-G-TTCGG TTTCTTTCAGTGTTG TERM 4927 5451360 - 5451396 + G 77 -13.6 -3.53012 | overlap 5451352 5451361 GGAAGGCGCGCTGGC TGGCCGCGGCCCGTCG CTGTT CGACGTGCTGCTGCCG TTTGCGCCGCCGCGC TERM 4928 5451361 - 5451395 + G 72 -14.9 -2.71712 | overlap 5451352 5451360 GAAGGCGCGCTGGCT GGCCGCGGCCCGTCG CTGTT CGACGTGCTGCTGCC GTTTGCGCCGCCGCG RPE_4869 5450845 - 5451423 + | methylated-DNA--protein-cysteine methyltransferase TERM 4929 5451483 - 5451466 - T 74 -14.1 -2.87136 | overlap 5451458 TCACCAACTACGACA GCGGCGC CGTT GCGCCGC CGCGCGGGCCCCACC RPE_4870 5452864 - 5451458 - | multi anti extrusion protein MatE TERM 4930 5451622 - 5451569 - G 75 -12.9 -3.37796 | overlap 5451570 GGCCAGCAGGTAGAA CGCGCCGGCGCCGGCGTGGATCGAC ATCA GCCCATACCCGCCGGCGGCGACGAA CAACAGCCGCGCGGT TERM 4931 5451766 - 5451713 - G 87 -14.5 -3.88787 | gap 1, overlap 5451701 CGACAGCCCGATAAA GGCGTACA-TCGGCGCCGCGGCAC GCAGATA GTGCCGCGCGGCCGCGCGCACGCC GGGATCGTCGGTGAA TERM 4932 5452228 - 5452179 - G 71 -12.7 -3.25494 | GAGAACAAGACCCAA GCCATCACCGAAGCGCCGATCGC GAAT GCGATCAGCGTGCCGGCGGCGAC GCCCTGCATGCCGAA TERM 4933 5453883 - 5453843 - g 80 -15.3 -3.25356 | opp_overlap 5453838, overlap 5453838 GGACAAGGAAGTCAA CCGCGCCGCGGTGCTGG AAATCGA CCGGCAGAGCGGCGCGG TGCGGCTGTTCGCCT RPE_4871 5453115 - 5454464 + | L-sorbosone dehydrogenase TERM 4934 5455114 - 5455071 - g 73 -12.4 -3.46212 | gap 1 ATCACCGACAAGGAA GCGCCCAACCAGTTCCTGCTG CTG CAGCAGG-ACGAGCCGGCCGC GCTCAACAACACCTC RPE_4872 5454654 - 5456651 + | metallophosphoesterase RPE_4873 5457311 - 5456691 - | hypothetical protein RPE_4874 5457446 - 5458066 + | hypothetical protein TERM 4935 5458321 - 5458350 + G 73 -3.5 -4.57569 | gap 1, overlap 5458322 5458323 ATTTCGACCTGTGCG TGCTGGTCGCAGAC ACC GT-TGCGGCCGGAG TTTTTACGCCGGTGA RPE_4875 5458170 - 5458517 + | DNA polymerase beta subunit RPE_4876 5459629 - 5458523 - | 2'-deoxycytidine 5'-triphosphate deaminase TERM 4936 5459826 - 5459800 - H 70 -10.1 -3.671 | opp_overlap 5459796 5459819 AAATAAATCGCTAAA CAGGCCGGG GATATGTGT CCCGGCCCG TGGAAATTTTTCCAG TERM 4937 5459819 - 5459846 + H 100 -8.4 -5.60993 | gap 1, opp_overlap 5459800, overlap 5459796 CCGGGGATATGTGTC CCGGCCCGTGGAA ATT TTTC-CAGGCCGG TTTTTTTGTGCCCGC TERM 4938 5459993 - 5460005 + G 74 -5.5 -4.53303 | overlap 5459994 CTTCCGACGCCCTGT TCCTG ACC CAGGG TTTTGTCTACGCCTC TERM 4939 5460729 - 5460708 - g 84 -7.1 -4.82667 | GCAGCAGACCAAAAA CGCAGCGGC GATC GCCGAGGCG CTGGCGGGGCATCCG TERM 4940 5460928 - 5460912 - g 77 -10.9 -3.77553 | CAAGATCAGCAACAA TCTTGGC GAC GCCAAGA GCCTCGTGACCCATC TERM 4941 5460992 - 5461007 + G 79 -6.8 -4.69053 | opp_overlap 5460981 5460980, overlap 5460993 AAATCCGCGCCGAAC TCGGCA TCGG TGCCGG TTTTATTCGCTACTC RPE_4877 5459887 - 5461086 + | O-succinylhomoserine sulfhydrylase RPE_4878 5462273 - 5461323 - | GDSL family lipase TERM 4942 5461554 - 5461522 - G 82 -11.9 -4.15565 | opp_overlap 5461531, overlap 5461530 5461532 CGCATCACCTCAAAA CGCGGAAAGATGCCG ACG CGGCGGATTTCCGCG ACCCGCGTCAGCAGA RPE_4879 5463037 - 5462273 - | hypothetical protein RPE_4880 5464269 - 5463034 - | putative OpgC protein TERM 4943 5463225 - 5463206 - G 74 -5.6 -4.46212 | overlap 5463179 5463208 TCGGCCAGCACAAAA TGCCCGGC GAAC GCCAGGAA GATGCCCAGGCAGAA apaG 5464462 - 5464953 + | ApaG hslO 5466155 - 5465154 - | Hsp33-like chaperonin TERM 4944 5465565 - 5465547 - G 78 -6.6 -4.57569 | opp_overlap 5465560 5465561 5465564, overlap 5465549 GGATTTGGGCAAAAA CTGCAGCA GCA TGCCGCCG GCGCGCCAGCGATGT TERM 4945 5465928 - 5465902 - G 90 -3.7 -5.4505 | gap 1, opp_overlap 5465925 GTCTGCAACAAAAAA CGGC-CATCG AATTTCAG CGACGAGCCG AGCAGCGTGGCCAGC RPE_4883 5467330 - 5466392 - | ornithine carbamoyltransferase argD 5468544 - 5467330 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 4946 5468644 - 5468621 - H 100 -18.2 -4.06055 | opp_overlap 5468618 5468617 5468616 5468614 ACCCCGGAAACGAAA CGTGCCGCCT TTCC AGGCGGCACG TGGATGTATTCTATG RPE_4885 5469011 - 5469520 + | GcrA cell cycle regulator RPE_4886 5470465 - 5469761 - | two component transcriptional regulator RPE_4887 5471196 - 5470480 - | phosphate uptake regulator, PhoU TERM 4947 5470854 - 5470885 + g 71 -2.8 -4.57569 | overlap 5470844 5470856 TCAGCGGATGGAAAT CCTTGTCGAGCGAG TTGA CGCGCTTGCCGATG TTTTTCGCGAGGTCG RPE_4888 5472041 - 5471214 - | phosphate ABC transporter permease RPE_4889 5472883 - 5472038 - | phosphate ABC transporter permease TERM 4948 5472646 - 5472611 - G 71 -13.8 -2.87564 | GTATTCGGCGAGATA GGTGCCGGCGAGCAGC CCGA GCGGCGCGCCGACGCC GACCCCGATCAGCGT RPE_4890 5473884 - 5472886 - | phosphate ABC transporter permease TERM 4949 5473726 - 5473690 - G 91 -12.2 -4.17789 | GAAGGAGAAACCAAA CTCCCGGATGGCCGGC CAGGC GCCGGCGATCAGCGAG ATGATGATGCCGCCG RPE_4891 5475171 - 5474158 - | periplasmic phosphate binding protein RPE_4892 5476666 - 5475314 - | histidine kinase TERM 4950 5476687 - 5476729 + r 76 -6.1 -4.56597 | gap 1, overlap 5476670 CGGCGTGGCGTCTTC GC-GCGCCGGCTTGCGTTCG AGCG CGGCGGCGAGCTTGCGCAGC TTTTTGGAACGGGCG RPE_4893 5477700 - 5476666 - | hypothetical protein RPE_4894 5478221 - 5477925 - | hypothetical protein RPE_4895 5479621 - 5478224 - | OmpA/MotB domain-containing protein TERM 4951 5479168 - 5479141 - G 78 -15.5 -3.17051 | overlap 5479139 GGTCGACCAGCAACA GCGCCGCGGCG TCGAAC CGCGGCGGCGC GCCGCGGGAGAGCGC TERM 4952 5480666 - 5480619 - g 71 -14.7 -2.58544 | overlap 5480618 CCCTATGGCGACAAG GCCGCCGCCGGCCCGCGCGAA TTCCGT CTGGCGCAGGCCAGCGGCTTC AAGACCGCGGTGACG RPE_4896 5479785 - 5480843 + | polysaccharide deacetylase TERM 4953 5480903 - 5480953 + T 90 -17.8 -3.09635 | gap 1, opp_overlap 5480914, overlap 5480906 5480910 5480914 GCCCGATGACAGGCT CCG-CGAAGCAATCCAGGGGC CAAGTACCGA GCCCCTGGATTGCTTCGTCGC TTCGCTCCTCGCAAT TERM 4954 5480906 - 5480949 + T 100 -22.7 -2.55544 | opp_overlap 5480914, overlap 5480903 5480910 5480914 CGATGACAGGCTCCG CGAAGCAATCCAGGGGC CAAGTACCGA GCCCCTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 4955 5480910 - 5480945 + T 86 -16.3 -3.22388 | opp_overlap 5480914, overlap 5480906 5480903 5480914 GACAGGCTCCGCGAA GCAATCCAGGGGC CAAGTACCGA GCCCCTGGATTGC TTCGTCGCTTCGCTC RPE_4897 5482851 - 5480989 - | heat shock protein 90 TERM 4956 5482766 - 5482752 - G 77 -4.2 -4.82901 | overlap 5482753 GTTCGCGCAGAAAAA TTTCGG TTT CCGAAT AGACCGAGTGCACCA RPE_4898 5484281 - 5482929 - | periplasmic sensor signal transduction histidine kinase RPE_4899 5484943 - 5484278 - | two component transcriptional regulator RPE_4900 5485308 - 5484943 - | peptidase RPE_4901 5485482 - 5486063 + | cytochrome B561 TERM 4957 5486276 - 5486253 - f 70 -12.4 -3.19602 | opp_overlap 5486251 5486251, overlap 5486251 5486256 CTCGCGATAGCAATA CGATGGCCGC GCGA GCGGCCATTG GCATTTGGACCGAAC TERM 4958 5486839 - 5486812 - g 81 -7.6 -4.67982 | gap 1, overlap 5486813 CGCGACCGAACAAAA CGCCGCG-CGAGG CAG CCTGGCCGCGGCC CAGCGGTTGGCCGAG RPE_4902 5486420 - 5486905 + | hypothetical protein RPE_4903 5486972 - 5487304 + | hypothetical protein TERM 4959 5487329 - 5487364 + T 93 -21.2 -2.9914 | gap 1 CAAGCGCTCAGGCGT CCGCGGCGCGAG-CAGC CAG GCTGGCTCGCGCCGCGA TGTCTCTCCGGCCTC RPE_4904 5487947 - 5487378 - | hypothetical protein TERM 4960 5488236 - 5488211 - R 100 -20.5 -3.68988 | GCGCACTCAAGATAA TGACGGCCGGG GACG CCCGGCCGTCA TCGTGAAGTCACGAA RPE_4905 5488851 - 5488261 - | hypothetical protein TERM 4961 5488805 - 5488786 - G 85 -5.7 -5.0538 | gap 1, overlap 5488754 5488788 GCGGACGCTAAAAAA CGCCACGA CCGGT TCG-GGCG CGAGTTGACCTGGTT mtnA 5490062 - 5488953 - | methylthioribose-1-phosphate isomerase RPE_4907 5490945 - 5490070 - | 5'-methylthioadenosine phosphorylase RPE_4908 5491170 - 5492324 + | iron-containing alcohol dehydrogenase RPE_4909 5493676 - 5492450 - | hypothetical protein TERM 4962 5493053 - 5493092 + g 86 -17.8 -2.92613 | gap 1, overlap 5493051 CAGCACCGCGCTATC GTCCGAGCCGC-CGGTGAC CGT GACACCGAGCGGCACGGGC TCATTTACCGTGGCG RPE_4910 5495078 - 5493828 - | TRAP transporter solute receptor TAXI family protein TERM 4963 5495594 - 5495637 + H 84 -16.7 -3.08073 | gap 1, opp_overlap 5495588 TACATGATAGCGCGC CCTCCGACGGCGGTGGCCCG GAAAA CGGTCCACCTTCG-CGGAGG TCTGTTCACAATACT TERM 4964 5497254 - 5497244 - g 74 -2.4 -4.82901 | overlap 5497245 5497246 CTGTCGCGACAAAAA GTGC CGC GCTC GATCGACTTCATCGA RPE_4911 5495807 - 5497357 + | acyl-CoA synthetase TERM 4965 5499053 - 5499021 - g 77 -6.8 -4.56597 | overlap 5499023 GTGGCGGCGCAAAAA CTGCTGTCCTGCGC CTATC GCACCGGGCAGCGG TTCGGCGCGATGCAT TERM 4966 5499194 - 5499168 - g 77 -3 -4.90013 | gap 1 GAATTGAACGAAAAA CAATGGCGCGG CGTGAT CCG-GCAATTG GTGGCGCTCGGCCAT RPE_4912 5497749 - 5499602 + | ATP-dependent DNA helicase RecQ RPE_4913 5499748 - 5499978 + | FmdB family regulatory protein RPE_4914 5500390 - 5500112 - | hypothetical protein RPE_4915 5501693 - 5500596 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 4967 5501468 - 5501439 - G 73 -10.7 -3.75024 | gap 1 GGCCAGCACGAACAA CCGCGGCATCGGCT GAT AGCCGGTGCC-CAG CAGCTTGCGCCGGAC RPE_4916 5501888 - 5502259 + | hypothetical protein RPE_4917 5503007 - 5502285 - | polysaccharide export protein TERM 4968 5502890 - 5502931 + g 70 -10.7 -3.57144 | gap 1 GTGCGGAGGATTGCG GCGG-CGCGGCGCCCTGACC ATA GGCCATGGCGTCGAGGCTGC TTTGCGGCTGGGCCA TERM 4969 5503157 - 5503134 - R 71 -13.8 -2.60901 | opp_overlap 5503149 5503150 5503152, overlap 5503133 ATAGTTCGAAGGAAG CGGCCACGGC GTTC GCCGTGGCCT TGAAGGCCATGCTTT RPE_4918 5503857 - 5503201 - | methionine sulfoxide reductase A TERM 4970 5503708 - 5503697 - G 70 -3.6 -4.56597 | TCGGCGCCCCAAAAA CAGC CGAG GCCG AACACCGCACGTTCC RPE_4919 5504349 - 5504032 - | hypothetical protein TERM 4971 5504517 - 5504549 + H 71 -8.4 -3.90744 | gap 1, overlap 5504521 5504538 5504542 CACTATAAGACCGGG CAGTTGGCGGTGGGG GCTA TCCTGCCGCC-GCTG TTCTTTGAACGGCGC rpsT 5504674 - 5504940 + | 30S ribosomal protein S20