TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.345157 %AT, 4830517 nt, 45137 terms. Intergenic: 0.384354 %AT, H2T: 534706 nt, 5744 terms; T2T: 174247 nt, 4246 terms; H2H: 249610 nt, 5109 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|192288433|ref|NC_011004.1| Rhodopseudomonas palustris TIE-1, complete genome (length 5744041) Rpal_0001 220 - 1638 + | chromosomal replication initiator protein DnaA Rpal_0002 1872 - 2990 + | DNA polymerase III, beta subunit Rpal_0003 3234 - 4373 + | DNA replication and repair protein RecF Rpal_0004 4590 - 7031 + | DNA gyrase, B subunit TERM 1 7069 - 7046 - T 71 -11 -3.50853 | opp_overlap 7041 7040 GTTGGTGAACTAGAA CCGCTTGGTG TGAG CATCAAGCGG TACCGCATTTCTTCT TERM 2 7084 - 7113 + T 80 -14.4 -3.12895 | gap 1, overlap 7083 7081 GTACCGCATTTCTTC TGTGATGGCCGGG CTCGT CCCGGCCATC-CA TGTCTTCGTCGCGGC Rpal_0005 8331 - 7213 - | 4-hydroxyphenylpyruvate dioxygenase TERM 3 8619 - 8645 + G 70 -10.9 -3.62096 | gap 1, opp_overlap 8603 ATCACCGGCTATCGC GCCGAGC-TGTC CGGC GACGCGCTCGGC TTTGGCGTGGTCGCC Rpal_0006 8457 - 8936 + | transcriptional regulator, AsnC family Rpal_0007 10430 - 8982 - | signal transduction histidine kinase TERM 4 10113 - 10097 - G 75 -9.3 -4.07568 | opp_overlap 10097 GGGCCTGCGCCAAAA GGCGCCG GAA CGCCGCC TGATTGGCCGGATCG Rpal_0008 10714 - 10430 - | KaiB domain protein Rpal_0009 12415 - 10724 - | putative circadian clock protein, KaiC Rpal_0010 13318 - 12809 - | transcriptional regulator, AsnC family Rpal_0011 13667 - 13458 - | hypothetical protein TERM 5 13509 - 13520 + g 79 -7.2 -4.59773 | overlap 13508 13507 CGAGGCTTCGAGATG GCGG ACCG CCGC TTTTTGCGCATCGCC Rpal_0012 14054 - 13806 - | hypothetical protein TERM 6 13883 - 13863 - G 77 -6.8 -4.46926 | overlap 13830 13872 13875 CAGCGCACGATAAAA CCGCGC AAACCAGCG GCGCGG CCAGGGCTGCGCCTG Rpal_0013 14232 - 14056 - | cytochrome oxidase maturation protein, cbb3-type Rpal_0014 16430 - 14232 - | copper-translocating P-type ATPase Rpal_0015 16965 - 16465 - | FixH family protein Rpal_0016 18442 - 16985 - | cytochrome c oxidase accessory protein CcoG TERM 7 18332 - 18293 - G 73 -3.6 -4.67904 | gap 1, opp_overlap 18297, overlap 18297 18299 CACGAAGGGCAAAAA GTAATAGATCCCGA-GGCA GAC CGCCATCAGGATCCATTTG ATTCGCCGGAACGGG TERM 8 18535 - 18510 - R 74 -11.9 -3.46602 | opp_overlap 18510, overlap 18531 GCGCGCAGATCACAA CCTCGCGTGTC CCCC AACACACGAGG TTCTGCGCGCCCGCG Rpal_0017 19440 - 18559 - | cytochrome c oxidase, cbb3-type, subunit III Rpal_0018 19612 - 19448 - | Cbb3-type cytochrome oxidase component TERM 9 19625 - 19636 + r 80 -5.8 -4.77036 | CATGTCGCCGCCTCA GCGA AGGT TCGC TTTTTCGTCGTACAG Rpal_0019 20356 - 19622 - | cytochrome c oxidase, cbb3-type, subunit II TERM 10 20188 - 20222 + g 76 -8.6 -4.21908 | gap 1 TGTTGCGGCCTGCCA GTTCGAGCGGGGTGT AAGGAC GCACCCCG-TCGACC TTTTCGATCGTGCTC Rpal_0020 22015 - 20369 - | cytochrome c oxidase, cbb3-type, subunit I TERM 11 22009 - 22025 + g 70 -2.3 -4.63218 | TCGAATTCAGGGCTT GATTCAT CTG ATCAATC TTTTCTTCGGCGGGC Rpal_0021 23246 - 22326 - | 2-dehydropantoate 2-reductase Rpal_0022 24057 - 23320 - | short-chain dehydrogenase/reductase SDR Rpal_0023 24778 - 24176 - | DSBA oxidoreductase TERM 12 24255 - 24285 + g 77 -15.4 -3.04263 | opp_overlap 24245 24262, overlap 24260 24262 AAGAAGGTCGGTGAG CCGAACACGCCGCG CTG CACGGCGTCTTCGG TGTTGGCGATGAGCT Rpal_0024 24994 - 25662 + | Glutathione S-transferase domain Rpal_0025 26653 - 25778 - | short-chain dehydrogenase/reductase SDR Rpal_0026 28659 - 26926 - | gamma-glutamyltransferase TERM 13 27126 - 27153 + g 71 -14.8 -2.50113 | gap 1, overlap 27125 GCCATTGATGATGCA GCCGCGG-CGCCG CCA CGGCGTCCGCGAC GTTCATCCGGTAATC Rpal_0027 28765 - 30162 + | major facilitator superfamily MFS_1 TERM 14 30340 - 30307 - f 79 -8.1 -4.30844 | opp_overlap 30309 30315 30324, overlap 30309 30315 ATTGCAGCATCAAAA TCCGAAAAGCCGCCA GACC TGGCGGCTTTTTCGT TTGAGCCGGCAGGTC TERM 15 30309 - 30339 + F 83 -14.9 -3.53091 | gap 1, opp_overlap 30307 30309 30315, overlap 30315 30324 TGCAGCATCAAAATC CGAAAA-GCCGCCA GACC TGGCGGCTTTTTCG TTTGAGCCGGCAGGT TERM 16 30339 - 30309 - f 74 -14.9 -2.50493 | gap 1, opp_overlap 30309 30315 30324, overlap 30307 30315 TGCAGCATCAAAATC CGAAAA-GCCGCCA GACC TGGCGGCTTTTTCG TTTGAGCCGGCAGGT TERM 17 30315 - 30332 + F 100 -12.7 -4.98531 | opp_overlap 30309 30307 30315, overlap 30309 30324 ATCAAAATCCGAAAA GCCGCCA GACC TGGCGGC TTTTTCGTTTGAGCC TERM 18 30332 - 30315 - f 95 -12.7 -4.28651 | opp_overlap 30315 30309 30324, overlap 30309 30307 ATCAAAATCCGAAAA GCCGCCA GACC TGGCGGC TTTTTCGTTTGAGCC Rpal_0028 30377 - 31471 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 19 31518 - 31476 - T 95 -11.5 -4.56597 | gap 2, opp_overlap 31470 31478 31480, overlap 31480 CTGCGGCGTGAAAAA CGAA--GCGGGACAGCAAC GCGAACG GTCGCTGTCCCGCTATTCG TCGTCCTTTGTTAGT TERM 20 31478 - 31514 + T 72 -12.3 -3.26874 | opp_overlap 31476 31480, overlap 31470 31480 GCGGCGTGAAAAACG AAGCGGGACAGCAAC GCGAACG GTCGCTGTCCCGCTA TTCGTCGTCCTTTGT TERM 21 31480 - 31512 + T 80 -14.9 -3.19138 | opp_overlap 31476 31480, overlap 31478 31470 GGCGTGAAAAACGAA GCGGGACAGCAAC GCGAACG GTCGCTGTCCCGC TATTCGTCGTCCTTT TERM 22 31512 - 31480 - T 100 -17.1 -3.80855 | opp_overlap 31480 31478 31470, overlap 31476 GGCGTGAAAAACGAA GCGGGACAGCAAC GCGAACG GTCGCTGTCCCGC TATTCGTCGTCCTTT Rpal_0029 33121 - 31529 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 23 33279 - 33262 - R 74 -12.7 -3.28924 | opp_overlap 33259 CACCGCTCTCGACAA CGGCGAC CAAG GTCGCCG AAAGCTTCATATTTT Rpal_0030 35061 - 33307 - | Heparinase II/III family protein TERM 24 35261 - 35251 - R 71 -5.4 -4.45664 | opp_overlap 35251 35249 TCAAGTTAACGAAAA TTCG TTG CGAA TCCTTTTAATCTGGA Rpal_0031 36712 - 35360 - | Fmu (Sun) domain protein Rpal_0032 36865 - 37083 + | protein of unknown function DUF1674 Rpal_0033 37169 - 37744 + | nuclease (SNase domain protein) Rpal_0034 38632 - 37748 - | hypothetical protein TERM 25 40378 - 40359 - g 71 -9.2 -3.84185 | CCTACGCAAACAGAA GCCGCGGC GCGA ACCGCAGC GTCAGCGCGAGCAGC Rpal_0035 38980 - 40437 + | amine oxidase TERM 26 40436 - 40468 + T 71 -9 -3.75105 | overlap 40426 40423 CGTCGTGGTGGCGCT GAGCGGCCTCAGCC GCGCA GGCTGCCGCCGGTC TTCTTGGTGACTTCC Rpal_0036 42855 - 40444 - | phenylalanyl-tRNA synthetase, beta subunit Rpal_0037 43479 - 43000 - | protein of unknown function DUF559 TERM 27 43269 - 43282 + g 70 -2.3 -4.62069 | GCTGACCGCCATCGA GCTCG ACCA CCAGC TTTTTCGCGTGGCAG Rpal_0038 44792 - 43710 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 28 44839 - 44819 - R 74 -14.7 -2.6563 | opp_overlap 44816, overlap 44815 44816 CCCCTCAAGAAGTCA TGCCCGGGC TTG ACCCGGGCA TCCATCGCTTCTCGA Rpal_0039 45295 - 44936 - | ribosomal protein L20 Rpal_0040 45579 - 45379 - | ribosomal protein L35 TERM 29 45621 - 45607 - R 86 -12.8 -4.09685 | TGCCACGCGCGAAAA GCGCCC CGG GGGCGC TCTGCGGCGGCGGAC TERM 30 45849 - 45885 + r 77 -15.2 -2.59564 | opp_overlap 45849 45855, overlap 45855 CCAAGAAAGCGCAAA GAAAAAGGCCCGTCAG ATTGG CTGCCGGGCCTTGTTC GTTCTGAAATCGAAA TERM 31 45885 - 45849 - R 90 -15.2 -3.76534 | opp_overlap 45849 45855, overlap 45855 CCAAGAAAGCGCAAA GAAAAAGGCCCGTCAG ATTGG CTGCCGGGCCTTGTTC GTTCTGAAATCGAAA TERM 32 45855 - 45879 + r 83 -12.8 -3.8591 | opp_overlap 45855 45849, overlap 45849 AAGCGCAAAGAAAAA GGCCCGTCAG ATTGG CTGCCGGGCC TTGTTCGTTCTGAAA TERM 33 45879 - 45855 - R 100 -12.8 -5.29846 | opp_overlap 45849 45855, overlap 45849 AAGCGCAAAGAAAAA GGCCCGTCAG ATTGG CTGCCGGGCC TTGTTCGTTCTGAAA Rpal_0041 46491 - 45913 - | translation initiation factor IF-3 TERM 34 46741 - 46695 - H 75 -14.2 -2.79501 | overlap 46684 46661 46660 CACATTGGCACCACA CGCCGCCGCGTGAGGCGCCGGC ATT GACGGCGCCTCACGGGGTACTG CAAACCAACCCGGCA TERM 35 47441 - 47403 - g 80 -13.8 -3.75332 | overlap 47408 ATTCTGCAAGGCAAA CAGGACGAAGACGTGCCG TGG CGCCACGCCTTCGAGCTG GCTGAGCGGCTGCCG TERM 36 47436 - 47408 - g 76 -15.3 -2.87581 | overlap 47403 GCAAGGCAAACAGGA CGAAGACGTGCCG TGG CGCCACGCCTTCG AGCTGGCTGAGCGGC Rpal_0042 46773 - 47558 + | conserved hypothetical protein, putative alpha/beta hydrolase superfamily Rpal_0043 48828 - 47716 - | domain of unknown function DUF1730 TERM 37 48018 - 48061 + g 75 -11.6 -3.64703 | gap 1, opp_overlap 48047 CGTCGAGCCGCACCA GTTCGCCGAGCGCCGGTGCCC GCA GAGCATCG-CGCGCGGCCAGC TTTGCCTCGCGCCCC Rpal_0044 49565 - 48873 - | Glutathione S-transferase domain Rpal_0045 49765 - 50571 + | undecaprenol kinase Rpal_0046 51586 - 50621 - | NADH dehydrogenase (ubiquinone) Rpal_0047 52000 - 52614 + | 3'-5' exonuclease Rpal_0048 52844 - 53584 + | protein of unknown function DUF1239 Rpal_0049 53593 - 54258 + | OstA family protein TERM 38 54589 - 54550 - g 87 -17 -3.35798 | gap 1, overlap 54551 ACGCCGCAGCGACAA CCGGCCGCGGCTGCGCCGC CGC GCCGCGCCGCCGCCG-CGG CGCAATCGGCAGCGC TERM 39 54586 - 54551 - g 85 -18.2 -2.61264 | gap 1, overlap 54550 CGCCGCAGCGACAAC CGGCCGCGGCTGCGCCG CCG CGCCGC-GCCGCCGCCG CGGCGCAATCGGCAG Rpal_0050 54394 - 55344 + | ABC transporter related Rpal_0051 55375 - 55515 + | hypothetical protein Rpal_0052 55551 - 57197 + | RNA polymerase, sigma 54 subunit, RpoN Rpal_0053 57255 - 57860 + | sigma 54 modulation protein/ribosomal protein S30EA Rpal_0054 58136 - 58597 + | PTS IIA-like nitrogen-regulatory protein PtsN TERM 40 58755 - 58697 - T 75 -13.9 -3.02471 | opp_overlap 58694 58718 58743, overlap 58695 58718 TCGCTACCAGAGACA CGTC-GCGACGTGCTCATTAAACCCGCGC ATC GCGCAGG-TTGATGAGCTCGCCACAGTCG TGATGAGTTGCGTCC TERM 41 58734 - 58718 - T 76 -11.5 -3.72893 | opp_overlap 58718, overlap 58697 GACGTGCTCATTAAA CCCGCGC ATC GCGCAGG TTGATGAGCTCGCCA Rpal_0055 59469 - 59203 - | protein of unknown function DUF1150 Rpal_0056 59945 - 59520 - | heat shock protein Hsp20 Rpal_0057 61190 - 60099 - | ABC transporter related TERM 42 60961 - 61009 + g 72 -11.5 -3.61103 | opp_overlap 60953 60950 60948 AACACCATCGCGATA TCGCGATCGGCCGGCTCGACGTC GTT GACGACACGGCCGCCGATCTCGA TTTCGCCTGCGGTTA Rpal_0058 62041 - 61193 - | binding-protein-dependent transport systems inner membrane component Rpal_0059 62922 - 62041 - | binding-protein-dependent transport systems inner membrane component Rpal_0060 64415 - 63087 - | extracellular solute-binding protein family 1 TERM 43 63233 - 63270 + g 76 -14.8 -3.17688 | overlap 63236 GCTGCACCATATTGC CGAGCCGCAGACCGCG CGAATT CTCGGTCGGCGGCTTG TTGGTCAGCTCCTTG TERM 44 63236 - 63267 + g 79 -12.9 -3.7282 | overlap 63233 GCACCATATTGCCGA GCCGCAGACCGCG CGAATT CTCGGTCGGCGGC TTGTTGGTCAGCTCC TERM 45 64614 - 64641 + r 86 -18.4 -2.79133 | CGACGGCCACGACGA GCGACGCCGGCA TAGC TGCCGGCGCCGC TGTGATCAGCGCTTG Rpal_0061 65852 - 64647 - | L-carnitine dehydratase/bile acid-inducible protein F Rpal_0062 66134 - 65898 - | Excinuclease ABC C subunit domain protein TERM 46 66433 - 66420 - R 77 -2.3 -4.96501 | opp_overlap 66428 66429 66431, overlap 66432 GCTGAGAAAAATAAA GCTGC GATT GAAGC CCGGCTTCGCCCTGC Rpal_0063 67082 - 66681 - | hypothetical protein Rpal_0064 67223 - 68560 + | 3-phosphoshikimate 1-carboxyvinyltransferase Rpal_0065 69238 - 68564 - | protein of unknown function DUF374 Rpal_0066 69403 - 70041 + | cytidylate kinase Rpal_0067 70342 - 72039 + | ribosomal protein S1 TERM 47 72088 - 72066 - f 88 -16.2 -3.29649 | opp_overlap 72066 ACCTCACGACATCAA GGGCTCCGGC ATT GCCGGGGCCC TTTTTCGTTGCGCGC TERM 48 72066 - 72088 + F 100 -18.4 -4.8622 | opp_overlap 72066 ACCTCACGACATCAA GGGCTCCGGC ATT GCCGGGGCCC TTTTTCGTTGCGCGC Rpal_0068 72268 - 73248 + | signal peptide peptidase SppA, 36K type Rpal_0069 73414 - 73728 + | integration host factor, beta subunit Rpal_0070 73766 - 74152 + | hypothetical protein TERM 49 74251 - 74230 - g 78 -10.1 -4.1585 | CCACAATTGTGAAAA TCTGCGGTC TGAC GACCGCCGA CACGCTGGAAGCAGC Rpal_0071 74211 - 74852 + | Phosphoribosylanthranilate isomerase TERM 50 75199 - 75168 - g 70 -10.1 -3.6968 | overlap 75146 75144 75169 TCACAAGGTGAACAA CGTGCTCGGCCAG ATCATG CTGGCCAAGCGCA TGGGCAAGCCGCGGG Rpal_0072 74866 - 76080 + | tryptophan synthase, beta subunit Rpal_0073 76080 - 76916 + | tryptophan synthase, alpha subunit TERM 51 77356 - 77301 - g 82 -15.3 -3.39018 | overlap 77299 CGACGAGCGCAAATA CGCCGACCGCATCAAGGACGCCCGC ACTAAG ACCGGCGCCCATGACGCGGTACGCG TCGGCTTCGGCAAGC Rpal_0074 77026 - 78009 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit Rpal_0075 78006 - 79334 + | FolC bifunctional protein TERM 52 79484 - 79455 - T 84 -16.5 -3.06073 | opp_overlap 79460 79478, overlap 79444 79460 GAGAGGCCGGAAAAG CAAAACGGCCGGC GAAT GCCGGCCGTTTCA GAACGTTCATCGAGC TERM 53 79460 - 79479 + T 91 -16.4 -3.55801 | opp_overlap 79444 79455 79460, overlap 79478 GCCGGAAAAGCAAAA CGGCCGGC GAAT GCCGGCCG TTTCAGAACGTTCAT TERM 54 79479 - 79460 - T 100 -16.4 -4.67038 | opp_overlap 79460 79478, overlap 79444 79455 GCCGGAAAAGCAAAA CGGCCGGC GAAT GCCGGCCG TTTCAGAACGTTCAT Rpal_0076 79828 - 79508 - | thioredoxin Rpal_0077 83410 - 79925 - | double-strand break repair helicase AddA TERM 55 82429 - 82484 + g 75 -3.2 -4.77036 | gap 3, opp_overlap 82399 82395, overlap 82424 82454 82455 82468 CGAGCAGCCCGGCGA GC-CGCGCGCCTTCGCGCTGCAGCCTT TCGGC GAGGCCG-GGCGCTGAGTCGC-CGAGC TTTTTGGTGATCAGG Rpal_0078 86556 - 83407 - | double-strand break repair protein AddB TERM 56 85936 - 85956 + g 79 -16.1 -3.06915 | overlap 85922 85930 85917 CTCGGCATCGATCAG CCGGTCGCG CCG CGCGGCCGG TTCGATCCGGTCGGT Rpal_0079 87354 - 86632 - | Nucleotidyl transferase TERM 57 87529 - 87539 + r 71 -8.2 -3.96068 | overlap 87498 AGGCGTTCTCGGCTT GCGC CGC GCGC TTCTTCTTCCGGTCG Rpal_0080 87820 - 87512 - | hypothetical protein Rpal_0081 89444 - 87924 - | protein of unknown function UPF0079 Rpal_0082 91954 - 89441 - | PAS/PAC sensor signal transduction histidine kinase TERM 58 92069 - 92086 + r 76 -6.9 -4.40003 | opp_overlap 92044, overlap 92070 TGAACGGACTCGTGA CCGTCCG CAAA CGGACGA TTTATATTTCTCCGA Rpal_0083 92632 - 92174 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut Rpal_0084 94074 - 92629 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase Rpal_0085 95705 - 94128 - | 2-polyprenylphenol 6-hydroxylase TERM 59 95685 - 95661 - G 80 -14.9 -3.36273 | overlap 95641 95639 95662 GCGCGCGAACACGAA GGCGGCGCGGC CGA GCCGCGCCACA TGAGTGAGTGCTGCG TERM 60 95684 - 95662 - G 87 -18.4 -2.6155 | overlap 95639 95661 CGCGCGAACACGAAG GCGGCGCGGC CGA GCCGCGCCAC ATGAGTGAGTGCTGC Rpal_0086 96463 - 95702 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 61 96535 - 96523 - H 71 -4.7 -4.49756 | overlap 96524 96525 CCCGAAACACGAAAA CGGCG GTC CGCGG CGGACCATATAGCGC TERM 62 96765 - 96732 - g 70 -10.1 -3.66178 | opp_overlap 96731 96732 TCCCCGAAGTCGAAA CCGTCCGCCGCGGGC TGCA GCCGGCGATGGAGGG CTTTCGGATCGACCG Rpal_0087 96707 - 97582 + | formamidopyrimidine-DNA glycosylase Rpal_0088 98980 - 97634 - | Peptidoglycan-binding domain 1 protein TERM 63 97874 - 97862 - G 75 -9.1 -4.13767 | opp_overlap 97862 97871 CGGCGCACCGGAAAA GCCGA GGC TCGGC GGCGGCGTTACTATC TERM 64 98435 - 98447 + g 72 -6.9 -4.27443 | overlap 98410 GCTGTATTCGACCTT GCGGC CAG GCTGC TTCTTTTCCTGCTCG TERM 65 98819 - 98844 + g 72 -8.3 -4.13014 | gap 1 AAGATCCGACTGGAT CGCCTGGCGC TCCGCCT GCGCCA-GCG TTTTGGCGGTCTCCG Rpal_0089 99189 - 99989 + | UBA/THIF-type NAD/FAD binding protein TERM 66 100626 - 100683 + G 79 -16.1 -2.89668 | overlap 100628 100636 CGGCCCGGCGGTCGG CGGCATCGTGGTGGCGGCTGCCGGCGC GGTG GCGGCGTTCGCCGCCAATGCGGTGCTG TATCTGCCGCTATTG TERM 67 100628 - 100681 + G 74 -15.1 -2.99649 | overlap 100626 100636 GCCCGGCGGTCGGCG GCATCGTGGTGGCGGCTGCCGGCGC GGTG GCGGCGTTCGCCGCCAATGCGGTGC TGTATCTGCCGCTAT Rpal_0090 100114 - 101802 + | protein of unknown function DUF894 DitE Rpal_0091 101881 - 101783 - | hypothetical protein Rpal_0092 102152 - 101934 - | conserved hypothetical protein; putative signal peptide Rpal_0093 102622 - 102281 - | hypothetical protein TERM 68 102782 - 102811 + r 89 -16.4 -3.40299 | CCGCCGACACGCGAA CGGCGGGCGTGG AGCTGG CCACACCCGCCG TTGTCGATGTCGTCG Rpal_0094 103265 - 102861 - | hypothetical protein Rpal_0095 103685 - 103344 - | hypothetical protein Rpal_0096 104501 - 104226 - | hypothetical protein TERM 69 104532 - 104549 + H 83 -4.9 -5.06414 | opp_overlap 104537 AACGTGGCTACGCGA CTAAACT AAAC GGTTTAG TTTTTATTGCAAGCC Rpal_0097 104632 - 105279 + | transcriptional regulator, TetR family Rpal_0098 105276 - 106193 + | PepSY-associated TM helix domain protein TERM 70 106787 - 106736 - g 100 -19.5 -3.30441 | gap 3, overlap 106726 GAGCACCGCCGACAA CGCCCGCG-CG-GCGCAGC-GCACCG CCG CGGCGCAGCTCCGCTCGGCGCAGGCG CAATTGCGCCAGTCC Rpal_0099 106242 - 107468 + | efflux transporter, RND family, MFP subunit TERM 71 108156 - 108110 - g 73 -13.6 -3.30441 | gap 1 GATCAGCGCCCAGAA CGTGCAGGCGCCGGTCGGGCG GATCGG CGCGCGCCCGGTGCCCG-ACG ACCAGAAATTCCAGT TERM 72 109467 - 109498 + G 70 -10.1 -3.63805 | gap 1 CTGCCGTTCAACCTG CCGCCGGTCGTCGG CCTGT CC-ACTGCCGGCGG TTTCCAGTATCAGCT Rpal_0100 107472 - 110621 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Rpal_0101 110760 - 111170 + | protein of unknown function DUF1078 domain protein TERM 73 111258 - 111280 + T 84 -16.2 -3.06183 | CGCGGAGCCTGTCAT CGGGCGGCGC TTC GCGCCGACCG TTGGCTCGCAATGAC Rpal_0102 112371 - 111313 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 74 111465 - 111418 - G 81 -12.6 -3.85698 | gap 1, overlap 111451 GGCGGCGTCGAGAAA GGGCAACTCTGCCCGGCAGCGCG CCT CG-GCAAACGGGCAGCGTTGCGC GAAGCGGCAGCCGGG Rpal_0103 113366 - 112368 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 75 113043 - 113016 - G 71 -15 -2.50074 | gap 1, overlap 113015 113011 113013 113018 GCGGTGATAATACAG CACC-TCGGCGAT CTG ATCGCCGACGGTG TAGAGCGGGTTCAGC Rpal_0104 114277 - 113369 - | binding-protein-dependent transport systems inner membrane component Rpal_0105 115254 - 114274 - | binding-protein-dependent transport systems inner membrane component Rpal_0106 116884 - 115283 - | extracellular solute-binding protein family 5 Rpal_0107 117930 - 116974 - | cobalamin synthesis protein P47K Rpal_0108 119570 - 117927 - | Amidohydrolase 3 TERM 76 121093 - 121106 + G 73 -3.8 -4.57569 | opp_overlap 121089, overlap 121089 TTGCTACCGAAGCAT CTGC CGAGTT GCAG TTTTTCGCGCGGTCC Rpal_0109 119809 - 121350 + | transcriptional regulator, GntR family with aminotransferase domain Rpal_0110 122574 - 121366 - | putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transporter Rpal_0111 123634 - 122594 - | Alcohol dehydrogenase GroES domain protein TERM 77 122952 - 122906 - G 89 -10.2 -4.56597 | gap 3, overlap 122907 122935 GGTCTGCTGCAAAAA GCC-GGGCGCGCCGACGCATTCG AACA CGA-TGC-CCGGCGCACCGAGGC CGAGCCCGCCGAGCG Rpal_0112 125412 - 123664 - | thiamine pyrophosphate domain protein TPP-binding Rpal_0113 126241 - 125453 - | short-chain dehydrogenase/reductase SDR TERM 78 126284 - 126263 - H 72 -13.7 -2.71712 | gap 1, opp_overlap 126273, overlap 126262 GCGTCCTCCCGAAAT CCGC-GCCGC TTG GCGGCTGCGG TGTGACGTTGACCGC Rpal_0114 126442 - 127104 + | transcriptional regulator, TetR family Rpal_0115 127945 - 127157 - | protein of unknown function DUF81 TERM 79 127579 - 127550 - G 72 -12 -3.59979 | overlap 127551 CTTCTCGATCGCAAA GCCGCGGCCGAG CACGAC CACCGCCGCGGC CGTGATGGTCGCGAT TERM 80 127947 - 127978 + r 82 -10.9 -3.99374 | gap 1, overlap 127948 ATCAGCTCGTGCATC G-CCGTCGTCACCG CATAT CGATGACGACGGTC TTCTTCTTGGTGAAG TERM 81 127948 - 127976 + r 85 -14.6 -3.58505 | overlap 127947 TCAGCTCGTGCATCG CCGTCGTCACCG CATAT CGATGACGACGG TCTTCTTCTTGGTGA Rpal_0116 129465 - 127954 - | Aldehyde Dehydrogenase Rpal_0117 129677 - 130084 + | protein of unknown function DUF1486 Rpal_0118 130081 - 131475 + | FAD dependent oxidoreductase TERM 82 131544 - 131520 - T 100 -20.1 -4.77036 | opp_overlap 131520 TGCGACCATGAAAAA TCCCGGCAGGT CCG ACCTGCCGGGA TTTTTTGAATTTCGG TERM 83 131520 - 131544 + T 100 -20.1 -5.22039 | opp_overlap 131520 TGCGACCATGAAAAA TCCCGGCAGGT CCG ACCTGCCGGGA TTTTTTGAATTTCGG Rpal_0119 131952 - 131599 - | hypothetical protein TERM 84 132800 - 132766 - g 70 -10.6 -3.62096 | opp_overlap 132766 CCGTACCAGCCGAAA TCGCCCTACTCCGCCT CGA AGGCGGGGTCGGACCA TCTGGTGCGGGCCTG Rpal_0120 132295 - 133356 + | dTDP-glucose 4,6-dehydratase Rpal_0121 133382 - 133939 + | dTDP-4-dehydrorhamnose 3,5-epimerase Rpal_0122 133944 - 134837 + | dTDP-4-dehydrorhamnose reductase Rpal_0123 134839 - 135714 + | glucose-1-phosphate thymidylyltransferase Rpal_0124 135802 - 136692 + | hypothetical protein TERM 85 138867 - 138845 - g 80 -15.6 -3.29144 | CTATGTGCGGGACAA CGGCATCGGC ATC GCCGATACCG ATCAGCAACTGGTCT Rpal_0125 136785 - 139064 + | GAF sensor signal transduction histidine kinase TERM 86 139589 - 139567 - g 70 -9.8 -3.66178 | GGGCTGAACGGCAAA GCGCCGGC GCTGATT GCCGACGC TCGCTCACCGGAGAC Rpal_0126 139057 - 140697 + | TrkA-N domain protein Rpal_0127 141528 - 140704 - | metallophosphoesterase Rpal_0128 142349 - 141525 - | metallophosphoesterase TERM 87 142405 - 142364 - R 82 -10.8 -4.07568 | gap 1, opp_overlap 142364 TGGCCCGCTCCAAAA CGTGACG-CGACGGAGCGC TGGAC GCGCTCCGTCGCCGGGAGG TTCTTACGTTACTTG TERM 88 142364 - 142405 + r 76 -10.8 -3.75598 | gap 1, opp_overlap 142364 TGGCCCGCTCCAAAA CGTGACG-CGACGGAGCGC TGGAC GCGCTCCGTCGCCGGGAGG TTCTTACGTTACTTG Rpal_0129 143694 - 142414 - | extracellular solute-binding protein family 1 Rpal_0130 144553 - 143717 - | binding-protein-dependent transport systems inner membrane component Rpal_0131 145509 - 144550 - | binding-protein-dependent transport systems inner membrane component Rpal_0132 146656 - 145502 - | ABC transporter related TERM 89 146176 - 146141 - G 76 -8.3 -4.1891 | gap 2, overlap 146123 146137 146142 CTCGTCGAACAGAAA GCCGACCGGCTCGCGCA CCAG CGCGCGA-CCGACCG-C GACGCGCTGGCGCTG Rpal_0133 146784 - 147662 + | transcriptional regulator, LysR family Rpal_0134 148363 - 147668 - | ABC transporter related TERM 90 148180 - 148233 + g 75 -9.3 -4.14392 | opp_overlap 148151 148156 148207, overlap 148176 GCGCGCTGCGGCGGT GCACGGCGCCGGCGTCCGGCGTC AAGAGCCC GGCGGCGAGCGCCAGCAGCGTGC TTTTGCCGCTTCCGG Rpal_0135 149133 - 148360 - | binding-protein-dependent transport systems inner membrane component TERM 91 148422 - 148396 - G 75 -14.4 -3.28712 | overlap 148399 GTCGTCGCGCCACAA CCACAGCCGCCG CTG CAGCGGCTGCAG CACGCCGACATCGAC TERM 92 148419 - 148399 - G 73 -14.7 -2.82623 | overlap 148396 GTCGCGCCACAACCA CAGCCGCCG CTG CAGCGGCTG CAGCACGCCGACATC TERM 93 149165 - 149138 - R 71 -11.2 -3.48924 | gap 1 CTACCCCGCATAGAA CGCC-GCGTCCGG CAG CCGGCCGCCGACG ATGCCGGGATCGAGC Rpal_0136 150115 - 149123 - | ABC transporter substrate-binding protein Rpal_0137 151990 - 150131 - | hydrogenase, Fe-only Rpal_0138 153986 - 151995 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rpal_0139 155865 - 154156 - | putative methyl-accepting chemotaxis sensory transducer TERM 94 155322 - 155302 - G 71 -12.5 -3.27215 | opp_overlap 155319, overlap 155290 AAACGCCGACATCAA CTCGCCGCC GGA GGCGCCGAG CTGCGGCCGGTAGCG Rpal_0140 156961 - 155870 - | response regulator receiver modulated CheB methylesterase TERM 95 156491 - 156451 - G 71 -14.6 -2.64616 | gap 1, opp_overlap 156484 CCCCGATGCACACGA TCCGCTCGGTGGTCGGGCG CGAC CGCCCGGCGACCG-GCGGC GGAATGATCGCATCG Rpal_0141 157824 - 156982 - | MCP methyltransferase, CheR-type TERM 96 157941 - 157916 - R 85 -14.8 -3.54424 | opp_overlap 157914 157911 GCCGACGTTCCGAAA GTGAACGCCC GATCAG GGGCGTTCAC CGGTGTTGCGTTTGG Rpal_0142 160186 - 157985 - | methyl-accepting chemotaxis sensory transducer TERM 97 160273 - 160238 - R 72 -11.9 -3.27902 | gap 2, opp_overlap 160241, overlap 160226 160236 160234 TCACGCAACAACAGA TCG--CGACCGGGCGGC TCAA GCCGCCAGGTCGTTCGA TGGGGTCTCGGCGGC TERM 98 160241 - 160268 + r 90 -18.4 -3.07443 | opp_overlap 160226 160238 160236 160234 CGCAACAACAGATCG CGACCGGGCGGC TCAA GCCGCCAGGTCG TTCGATGGGGTCTCG Rpal_0143 160741 - 160253 - | CheW protein TERM 99 160480 - 160457 - G 72 -13.8 -2.9914 | overlap 160469 GACTTCGTAGACACA GTCGGCGACG AAGC CGACGCCGAC GACGCGGCCGGCGAC Rpal_0144 161272 - 160802 - | CheW protein Rpal_0145 163338 - 161272 - | CheA signal transduction histidine kinase Rpal_0146 163700 - 163335 - | response regulator receiver protein Rpal_0147 164023 - 163700 - | anti-sigma-factor antagonist TERM 100 164192 - 164207 + H 72 -2.4 -4.75174 | opp_overlap 164193, overlap 164193 CCGACACGGTGAACT ACGGGG CAAT TCCCGA TTTTTGGATTAGATC Rpal_0148 164312 - 165469 + | response regulator receiver modulated metal dependent phosphohydrolase TERM 101 165510 - 165565 + T 100 -21.3 -3.29461 | gap 3, overlap 165504 CAGGCCGAGCGACCG TGTCGCC-TCGGCAGCCGGGCGAA-GCG GAT CGTGTTCGCCCGGCGGCCGGCGGCG-CA TTCTGGACCGGATTG Rpal_0149 165820 - 165638 - | hypothetical protein TERM 102 165759 - 165779 + g 74 -12.5 -3.51032 | opp_overlap 165752 TTCACGAAGATCGCA CGGACGACG CCG CGCCGTCCG TTGTCCTTGCAGACT TERM 103 165924 - 165910 - R 78 -7 -4.5442 | overlap 165914 GCGTTAACCATAAAA GCGACG TCA CGGCGC CACCCAACGGCGAAG Rpal_0150 167450 - 166287 - | conserved hypothetical protein; putative glucokinase TERM 104 167591 - 167623 + H 100 -10.4 -4.82901 | opp_overlap 167569 167591, overlap 167594 167595 GGCGGGTATAAGTCA CGCACCGGCGCGGG CAGGT CTCGCGCCGGATTG TTTTTGTGCGGCCAG TERM 105 167594 - 167620 + H 100 -12.9 -4.52873 | opp_overlap 167569 167591, overlap 167591 167595 GGGTATAAGTCACGC ACCGGCGCGGG CAGGT CTCGCGCCGGA TTGTTTTTGTGCGGC TERM 106 167595 - 167619 + H 88 -16.4 -3.31001 | opp_overlap 167569 167591, overlap 167594 167591 GGTATAAGTCACGCA CCGGCGCGGG CAGGT CTCGCGCCGG ATTGTTTTTGTGCGG TERM 107 167749 - 167723 - H 100 -11.5 -4.7497 | gap 1, overlap 167724 TCGACTGACCAAAAA GCCGGCC-CGGG TTAA CCCGAGGCCGGG TTCGAACACGAAGGA TERM 108 167748 - 167724 - H 83 -15 -3.445 | gap 1, overlap 167723 CGACTGACCAAAAAG CCGGCC-CGGG TTAA CCCGAGGCCGG GTTCGAACACGAAGG TERM 109 167802 - 167792 - g 76 -8.2 -4.2828 | TCGCAGTCATCAAAA CCGG CGG CCGG CAATACCGTGTCGTT Rpal_0151 167773 - 168153 + | ribosomal protein L21 Rpal_0152 168243 - 168515 + | ribosomal protein L27 TERM 110 168568 - 168530 - f 80 -5.4 -4.83615 | opp_overlap 168515, overlap 168517 168532 GACGGTGGACAAAAA TATGTG-TCCGCCGGGTC CTGTC AAACCGGCGGAGCACA-A CTAAGGGCTCCAGGG TERM 111 168567 - 168532 - f 78 -10.5 -4.03995 | gap 1, opp_overlap 168515, overlap 168517 168530 CGGTGGACAAAAATA TGTG-TCCGCCGGGTC CTGTC AAACCGGCGGAGCACA ACTAAGGGCTCCAGG TERM 112 168581 - 168606 + F 100 -16.1 -5.31519 | opp_overlap 168574 168573 CAACTAAGGGCTCCA GGGGAGGCGGG AAAA CCGGCCTCCCC TTTTTCTTTGCGTAT TERM 113 169233 - 169222 - g 74 -5.8 -4.56597 | overlap 169223 GTCGTCGCTGAAAAA GTGG GGCA CCAC CAAGCGGCGGTGCTG Rpal_0153 168650 - 169249 + | GCN5-related N-acetyltransferase TERM 114 169284 - 169311 + F 91 -15.6 -3.90922 | opp_overlap 169282 169286, overlap 169286 TCATTGAAGTGAACG GATCGGCCGGGT TGTG ACCCGGCCGATG TTGTTTCGAGACAGT TERM 115 169309 - 169286 - f 86 -18.2 -2.57192 | opp_overlap 169286 169284, overlap 169282 ATTGAAGTGAACGGA TCGGCCGGGT TGTG ACCCGGCCGA TGTTGTTTCGAGACA TERM 116 169286 - 169309 + F 100 -18.2 -3.54488 | opp_overlap 169282 169286, overlap 169284 ATTGAAGTGAACGGA TCGGCCGGGT TGTG ACCCGGCCGA TGTTGTTTCGAGACA Rpal_0154 169461 - 169652 + | hypothetical protein Rpal_0155 169782 - 169955 + | hypothetical protein Rpal_0156 170861 - 169956 - | protein of unknown function DUF6 transmembrane TERM 117 170039 - 170009 - G 75 -9.7 -4.09108 | gap 1, overlap 170027 GCCAACCGAGATAAA GCCCG-GCCGCGAT GATA ATCGCGACGCCGGC CACCGTCGCCCGCGA TERM 118 170817 - 170772 - G 100 -13.9 -4.4078 | GTCGGCGAACGAAAA CGCCAGCATCGCCAGCAGCAT CAGC AGGATGCCGGCGATCCGGGCG GTGCGCGGGTCGGAC Rpal_0157 171013 - 172074 + | GTP-binding protein Obg/CgtA Rpal_0158 172213 - 173343 + | glutamate 5-kinase TERM 119 174362 - 174337 - g 76 -8.9 -4.19238 | overlap 174338 TGCTCAATGCCAAAA TGCGCCGCACA GGTG TCTGCGGCGCT GCCGAGACGCTGCTG Rpal_0159 173547 - 174839 + | gamma-glutamyl phosphate reductase Rpal_0160 174864 - 175493 + | nicotinate (nicotinamide) nucleotide adenylyltransferase Rpal_0161 175708 - 176160 + | iojap-like protein TERM 120 176213 - 176258 + F 70 -11.8 -3.22774 | gap 1, overlap 176215 GCGTGTCTGACGGAT GAGTAGCG-CGGCTCTCGCGC AAAGG GCGCGTGAGCCGATGCGACTA TTGATCCTGGCTGTC TERM 121 176215 - 176256 + F 80 -14.4 -3.17527 | gap 1, overlap 176213 GTGTCTGACGGATGA GTAGCG-CGGCTCTCGCGC AAAGG GCGCGTGAGCCGATGCGAC TATTGATCCTGGCTG TERM 122 176415 - 176389 - g 72 -11.4 -3.59627 | overlap 176380 176390 ATGAAATTGCCGAAA GCCGCGCCCGCG AGG CGCCGGCACGGA TGGCGGAAGAAGCCG TERM 123 176414 - 176390 - g 72 -14.9 -2.75294 | overlap 176389 176380 TGAAATTGCCGAAAG CCGCGCCCGCG AGG CGCCGGCACGG ATGGCGGAAGAAGCC Rpal_0162 176250 - 176732 + | protein of unknown function DUF163 Rpal_0163 176752 - 178143 + | Peptidase M23 Rpal_0164 178140 - 179516 + | carboxyl-terminal protease TERM 124 179551 - 179570 + F 100 -16.4 -4.7254 | opp_overlap 179551 ATGTATTTGCTGAAA GGGCGGCC GGTG GGCCGCCC TTTTTGCTGCGCGGT TERM 125 179570 - 179551 - f 91 -16.4 -3.54543 | opp_overlap 179551 ATGTATTTGCTGAAA GGGCGGCC GGTG GGCCGCCC TTTTTGCTGCGCGGT Rpal_0165 179667 - 180905 + | protein of unknown function DUF610 YibQ TERM 126 181186 - 181143 - g 74 -7.5 -4.2461 | gap 3, opp_overlap 181177, overlap 181146 AGCTTTATGAAGAAA CCAG--CGTCAACTCGGTCGAG AAG CTCG-CCGAGGTGCCGGACTGG CTGATCTACGATATC Rpal_0166 180944 - 181450 + | NUDIX hydrolase Rpal_0167 182702 - 181632 - | hypothetical protein TERM 127 182894 - 182870 - H 76 -9.2 -4.08692 | gap 1, opp_overlap 182860 182867 182870, overlap 182858 CAATGCGGCGGAAAA CGGCCG-CCGC GACC GCGTTCGGCCG TCCGTTTCGAGCCAA Rpal_0168 182970 - 183917 + | NAD-dependent epimerase/dehydratase TERM 128 184157 - 184141 - g 73 -13.7 -3.14344 | overlap 184128 GACCGGCGTGACCAA CGCCGAG ATC CTCGGCG AGACCGACTGGGCCA Rpal_0169 183914 - 184435 + | NUDIX hydrolase TERM 129 184593 - 184562 - T 91 -12.3 -4.25848 | overlap 184563 184567 AACGTCGCATCAAAA GCAAATGGCCGGG ACGATG CCCGGCCATTCGA AACGTCGGAACACCT TERM 130 184592 - 184563 - T 83 -15.8 -3.15027 | overlap 184562 184567 ACGTCGCATCAAAAG CAAATGGCCGGG ACGATG CCCGGCCATTCG AAACGTCGGAACACC TERM 131 184588 - 184567 - T 89 -13 -4.23781 | overlap 184563 184562 CGCATCAAAAGCAAA TGGCCGGG ACGATG CCCGGCCA TTCGAAACGTCGGAA Rpal_0170 185025 - 184618 - | ATP synthase F1, epsilon subunit Rpal_0171 186569 - 185139 - | ATP synthase F1, beta subunit TERM 132 186637 - 186676 + r 70 -7.2 -4.03141 | gap 1, overlap 186638 GTAAACCTGTGTAAC GTCGTC-AGATCGCCTCGG CGC CCGAGATGATCTCGATGAG TTCTTTGGTGATCAT Rpal_0172 187516 - 186641 - | ATP synthase F1, gamma subunit Rpal_0173 189192 - 187660 - | ATP synthase F1, alpha subunit Rpal_0174 189752 - 189192 - | ATP synthase F1, delta subunit TERM 133 189718 - 189700 - G 76 -6.6 -4.44046 | overlap 189701 189715 GCCAGTTCAAACAAA GCGGTCGC GTA ACGACCGG AGACTCCGGAAACCG TERM 134 189803 - 189792 - H 84 -2.2 -5.26875 | overlap 189777 189793 189794 TGGCCAAGGAAAAAA CCGT CGCC ACGA AGCGGCGCCCCCGAT TERM 135 190528 - 190472 - g 100 -11.4 -4.86731 | gap 1, opp_overlap 190472 190476 190503, overlap 190467 190475 TGGTTCGAAAGAAAA CACCGGCGCTGCTCACCACCG-GGCCG GCTG CGGCCGCGGCGATGATCGTCGCCTCTG TCTTCCTTGGCGGAT TERM 136 190476 - 190524 + G 72 -13 -3.15147 | gap 1, opp_overlap 190467 190475 190472, overlap 190472 190503 TCGAAAGAAAACACC GGCGCTGCTCACCACCG-GGCCG GCTG CGGCCGCGGCGATGATCGTCGCC TCTGTCTTCCTTGGC Rpal_0175 190456 - 190926 + | rare lipoprotein A TERM 137 191020 - 191055 + T 93 -13.4 -4.11216 | opp_overlap 191025, overlap 191025 TCTAACGTCACGTGA CAAAAGCCTGCCGC CGATTGTA GCGGCAGGCTTTTC TTTTGCGCGTCAGCC TERM 138 191050 - 191025 - T 100 -14 -4.4009 | opp_overlap 191020 191025 CGTCACGTGACAAAA GCCTGCCGCC GATTGT AGCGGCAGGC TTTTCTTTTGCGCGT TERM 139 191025 - 191050 + T 100 -13.3 -5.08255 | opp_overlap 191025, overlap 191020 CGTCACGTGACAAAA GCCTGCCGC CGATTGTA GCGGCAGGC TTTTCTTTTGCGCGT Rpal_0176 193292 - 191082 - | primosomal protein N' TERM 140 192088 - 192118 + g 75 -15.5 -2.78384 | opp_overlap 192062, overlap 192072 192066 CGCATCGGCGGCTCG CGCCGCAGATCGA TCGCT TCGATCTGCGGCA TGTGCTGACCGCCGA TERM 141 192396 - 192354 - G 73 -9.7 -3.97368 | gap 1, overlap 192356 192357 GGCGTAAGGCAGAAA CAGCGCCGA-GCGCGCGCCG ACCA CGACGCGGGCTTCGCCGGCG GCGATCGAAGCCCAG TERM 142 193930 - 193882 - g 75 -3.2 -4.78753 | gap 3 CGAAGATCAAGAAAA GCCTGCCG-AAGCCGC-TGCCGA TCGCGG CCGCCAAGCGGCTTGCGG-ACGC CGACGAGCGCGCCGG TERM 143 194121 - 194107 - g 81 -5.6 -4.75309 | GCAAAGGCAACAAAA CCCGCA TGG TGCCGG TGCTGCAGAACGTGC Rpal_0177 193494 - 194465 + | integrase family protein Rpal_0178 194606 - 195196 + | putative membrane protein of unknown function TERM 144 195238 - 195210 - T 100 -18.9 -4.91084 | opp_overlap 195204 GAGCCAAGAAGAAAA TCGCGCGGACCGA GCC TCGGTTCGCGCGA TGAAACGATTTGAAT Rpal_0179 195802 - 195260 - | hypothetical protein Rpal_0180 197245 - 195842 - | dihydrolipoamide dehydrogenase TERM 145 197128 - 197141 + g 82 -5.9 -4.82901 | overlap 197108 CGTTCAGGCAGGTGC CGCCG AGCG TGGCG TTTTTCTCGACCACC Rpal_0181 198023 - 197277 - | short-chain dehydrogenase/reductase SDR Rpal_0182 198432 - 198031 - | hypothetical protein Rpal_0183 199744 - 198491 - | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 146 199847 - 199815 - R 80 -6 -4.78764 | opp_overlap 199841, overlap 199820 CAAACTCAGGAAAAA CCGAAGGGCCGCCG TCAGG CGGCGGCCCGATGC GTCAACGCAACGCTT TERM 147 199842 - 199820 - R 95 -17.7 -3.47218 | opp_overlap 199841, overlap 199815 TCAGGAAAAACCGAA GGGCCGCCG TCAGG CGGCGGCCC GATGCGTCAACGCAA Rpal_0184 202806 - 199849 - | 2-oxoglutarate dehydrogenase, E1 subunit TERM 148 201165 - 201187 + g 72 -6.9 -4.19506 | gap 1, overlap 201165 ATTCGGCATCGAGCC GG-GCGCGCC AGTC GGCCCGCGCC TTTTCGACTTCGCCT TERM 149 202524 - 202534 + g 72 -8.2 -4.12902 | overlap 202505 TGGCCTGGATCTTCT GGCC GAC GGCC TTTTCGACCTGGTTC TERM 150 202870 - 202848 - R 93 -17.8 -3.3344 | ACTTAATCGCGATAA GCTGATCCGG TTA CCGGATCAGC AACATAGTGCACCTT Rpal_0185 203818 - 202934 - | succinyl-CoA synthetase, alpha subunit Rpal_0186 205079 - 203883 - | succinyl-CoA synthetase, beta subunit TERM 151 205123 - 205158 + r 76 -10.5 -3.91798 | gap 2, opp_overlap 205145, overlap 205124 GCCGGTTGAACCGCG ATG-CTGCGCCGG-TCC TTAA GGAGCCGGCGCAGCCAG TTTGGTTAGACGTTC TERM 152 205124 - 205157 + r 74 -14 -2.94597 | gap 2, opp_overlap 205145, overlap 205123 CCGGTTGAACCGCGA TG-CTGCGCCGG-TCC TTAA GGAGCCGGCGCAGCCA GTTTGGTTAGACGTT Rpal_0187 206143 - 205175 - | malate dehydrogenase, NAD-dependent Rpal_0188 207473 - 206289 - | AFG1-family ATPase Rpal_0189 208095 - 207556 - | 2'-5' RNA ligase Rpal_0190 208915 - 208301 - | lipolytic protein G-D-S-L family Rpal_0191 208995 - 209738 + | ABC transporter related Rpal_0192 209742 - 212312 + | protein of unknown function DUF214 TERM 153 214585 - 214603 + G 74 -2.2 -4.82901 | overlap 214588 GTGTTCCGGCTGTCA GCGCAGGG GCG CCCGGTTC TTTTTGTCAAGACCG TERM 154 214588 - 214600 + G 72 -4.7 -4.52873 | overlap 214585 TTCCGGCTGTCAGCG CAGGG GCG CCCGG TTCTTTTTGTCAAGA Rpal_0195 214465 - 215259 + | aminoglycoside phosphotransferase TERM 155 215754 - 215734 - f 81 -15.4 -3.07935 | opp_overlap 215734 ACCTGACGGATCGAA GCCCCGGC CCAGT GCCGGGGC TTTTGTTTTTGGGCA TERM 156 215734 - 215754 + F 100 -15.4 -5.26119 | opp_overlap 215734 ACCTGACGGATCGAA GCCCCGGC CCAGT GCCGGGGC TTTTGTTTTTGGGCA Rpal_0196 215859 - 216389 + | GCN5-related N-acetyltransferase Rpal_0197 216817 - 216449 - | hypothetical protein TERM 157 217099 - 217118 + r 100 -7.8 -5.79595 | CTCGATCCCCCTCCT GGGCCGAC GCAA GTTGGTCC TTTTTTGTTTTAAGG TERM 158 217243 - 217263 + r 73 -8.1 -4.09685 | AGCGACGTGAAGGCG GCCCCGAGC ATC GCACCGGGC TTTTCGCGGCTACCG Rpal_0198 217976 - 217221 - | protein of unknown function DUF1223 TERM 159 217545 - 217596 + g 72 -13.6 -3.16191 | overlap 217557 GATTTCTTTGCCCTC GACCGCCACCGAGACCGGCACGGT CATG ACTCCGCCGGTCTTGTCGGTGGTC TTGATCGCGCTGTCG TERM 160 218079 - 218057 - R 95 -11.2 -4.67038 | opp_overlap 218057 GCCTTAAAACGAAAA GGCGGCCCTT TGC ATAGGCCGCC TTCCGTTCACCTGCC TERM 161 218153 - 218136 - R 71 -12.7 -3.03124 | GCCTATCGGCGAAGA TCGCGGC TCAG GCCGCGA GCTTGCGCAGCACGT Rpal_0199 220860 - 218143 - | aconitate hydratase 1 Rpal_0200 221076 - 221678 + | heme exporter protein CcmA Rpal_0201 221675 - 222343 + | heme exporter protein CcmB TERM 162 223029 - 223059 + G 74 -7.5 -4.24326 | GCTCGACAAGGCGTT CCTGATCCCGCTG CTGGT CACCGCGATCGGG TTTTCACTGCTGTTT Rpal_0202 222436 - 223170 + | heme exporter protein CcmC Rpal_0203 223170 - 223343 + | heme exporter protein CcmD Rpal_0204 223360 - 223956 + | periplasmic protein thiol/disulphide oxidoreductase DsbE Rpal_0205 224096 - 224479 + | hypothetical protein Rpal_0206 225236 - 224619 - | intracellular septation protein A Rpal_0207 226180 - 225233 - | signal recognition particle-docking protein FtsY Rpal_0208 226209 - 227177 + | pseudouridine synthase TERM 163 227357 - 227345 - f 74 -9.1 -3.9461 | overlap 227347 TTGCCTTAACAACAA CAGCC GGA GGCTG AGACGATCGCACGTC TERM 164 227508 - 227523 + F 90 -8.2 -4.82901 | overlap 227501 227509 AGCACCGACGGCGGG TGCGGC ATCG GCCGCG TTTTTGTGGAGGAAC TERM 165 229033 - 229055 + G 73 -12.6 -3.4252 | ACTTCACCGGTGACG GCTGCCGGCG CGA CGCCGACGGC TTCTACTGGATCACC Rpal_0209 227541 - 229493 + | acetate/CoA ligase TERM 166 229533 - 229561 + F 100 -23.9 -3.07962 | overlap 229531 229534 229535 GCTGCCCTCTCCAGA GGCCCCGCCTGTG ATT CGCAGGCGGGGCC TCTTCGCGTCTCGCG Rpal_0210 229876 - 230403 + | ErfK/YbiS/YcfS/YnhG family protein TERM 167 230455 - 230426 - T 81 -15.1 -3.04517 | opp_overlap 230431, overlap 230431 AGCGCGGTCTAAAAG GAAAAGCCGCGGA CGGA TCCGCGGCTTTTT TGTTACGTGAGATCG TERM 168 230431 - 230450 + T 100 -15 -5.4833 | opp_overlap 230426 230431 GGTCTAAAAGGAAAA GCCGCGGA CGGA TCCGCGGC TTTTTTGTTACGTGA TERM 169 230450 - 230431 - T 100 -15 -4.67038 | opp_overlap 230431, overlap 230426 GGTCTAAAAGGAAAA GCCGCGGA CGGA TCCGCGGC TTTTTTGTTACGTGA Rpal_0211 231398 - 230478 - | OmpA/MotB domain protein Rpal_0212 231500 - 232618 + | hypothetical protein TERM 170 232659 - 232691 + T 91 -17.7 -3.15579 | opp_overlap 232659, overlap 232661 GCCGAAGAGAAATAA TTCCGCCGCGTCCGA GGC TCGAACGCGGCGGTA TTCATCACGAGTTCA TERM 171 232691 - 232659 - T 100 -19.9 -4.21773 | opp_overlap 232659 232661 GCCGAAGAGAAATAA TTCCGCCGCGTCCGA GGC TCGAACGCGGCGGTA TTCATCACGAGTTCA TERM 172 232661 - 232689 + T 95 -20.3 -3.13899 | opp_overlap 232659, overlap 232659 CGAAGAGAAATAATT CCGCCGCGTCCGA GGC TCGAACGCGGCGG TATTCATCACGAGTT Rpal_0213 233035 - 232778 - | hypothetical protein Rpal_0214 233523 - 233035 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding TERM 173 233713 - 233734 + r 93 -18.7 -3.25823 | opp_overlap 233713, overlap 233695 233733 GTGATCAAAACAAAA CGGCCGGGC GAAA GCCCGGCCG TTGGTATCAGCAACG TERM 174 233734 - 233713 - R 100 -18.7 -5.13722 | opp_overlap 233713 233695 233733 GTGATCAAAACAAAA CGGCCGGGC GAAA GCCCGGCCG TTGGTATCAGCAACG Rpal_0215 234542 - 233760 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein Rpal_0216 236473 - 234650 - | succinate dehydrogenase, flavoprotein subunit Rpal_0217 236890 - 236477 - | succinate dehydrogenase, hydrophobic membrane anchor protein Rpal_0218 237285 - 236887 - | succinate dehydrogenase, cytochrome b556 subunit Rpal_0219 237664 - 238608 + | cation diffusion facilitator family transporter Rpal_0220 240352 - 238841 - | AMP-dependent synthetase and ligase TERM 175 239064 - 239046 - G 70 -11 -3.53091 | ACGCCCTCGCCGAAA TCGGCATG CGG CACGCCGA TCACCGCGGATTCGA TERM 176 239442 - 239478 + g 70 -13.1 -3.02043 | gap 1 GTGTTCATGTTGGTC TCGGTCATGCCGTAGC GCTCGA GC-ACGGCGTGACCGG TCTTCGCCGACCATT Rpal_0221 240629 - 241204 + | beta-Ig-H3/fasciclin TERM 177 241307 - 241272 - f 85 -14.6 -3.6215 | opp_overlap 241277, overlap 241273 GCAAGTCACCGCAAA TGAAGGCGCGGGCCGG GTGA CCGGCTCGCGCTTTCG TGATCCCGATCGCGC TERM 178 241306 - 241273 - f 86 -18.1 -2.76969 | opp_overlap 241277, overlap 241272 CAAGTCACCGCAAAT GAAGGCGCGGGCCGG GTGA CCGGCTCGCGCTTTC GTGATCCCGATCGCG TERM 179 241277 - 241302 + F 100 -19.7 -3.78953 | opp_overlap 241273 241272 TCACCGCAAATGAAG GCGCGGGCCGG GTGA CCGGCTCGCGC TTTCGTGATCCCGAT Rpal_0222 241426 - 242064 + | hypothetical protein Rpal_0223 242180 - 242959 + | oxidoreductase molybdopterin binding TERM 180 242973 - 243020 + F 77 -14.8 -2.90322 | gap 1, overlap 242973 AGTCGTCCTCATCCG CCCGTCATTCCGGG-GCACGCGC AAC GCGCGTGAGCCCGGAATCCCGCG GTTATTGTGATCGGC TERM 181 242973 - 243021 + F 89 -14.6 -3.84406 | gap 2, overlap 242973 AGTCGTCCTCATCCG CC-CGTCATTCCGGG-GCACGCGC AAC GCGCGTGAGCCCGGAATCCCGCGG TTATTGTGATCGGCG Rpal_0224 243232 - 243750 + | superoxide dismutase copper/zinc binding TERM 182 243809 - 243751 - T 76 -13.1 -3.41234 | GAGGAAGCTAAGTAA CGCGGGCAGGTCATTCCGGG-GCACGCGC AAC GCGCGTGAACCCGGAATGACG-GTACGAG TTGGGACTACTTAGG Rpal_0225 245003 - 243816 - | protein of unknown function DUF1228 TERM 183 245424 - 245382 - g 73 -13.2 -3.31792 | opp_overlap 245375 CTATGACGCCGACAA GGTGGCCATCACCGACGCCA CTA TGGCGCTGGCGCAGGCCTCC GACGCGGTGATCTTC Rpal_0226 245224 - 246336 + | 3-isopropylmalate dehydrogenase TERM 184 246410 - 246390 - T 95 -19.7 -3.20367 | overlap 246381 CAACAATGCGAGGAA CCGCCGGGC CCA GCCCGGCGG GGACCTTGAACCCAA TERM 185 246427 - 246459 + T 100 -22.1 -3.88787 | opp_overlap 246427 246433, overlap 246433 GACCTTGAACCCAAA CAAAAACGCCCGCCG GAT CGGCGGGCGTTTTCG TTTCTGAGGCTGTCG TERM 186 246459 - 246427 - T 100 -24.3 -3.75629 | opp_overlap 246427 246433, overlap 246433 GACCTTGAACCCAAA CAAAAACGCCCGCCG GAT CGGCGGGCGTTTTCG TTTCTGAGGCTGTCG TERM 187 246433 - 246453 + T 100 -19.7 -4.61873 | opp_overlap 246427 246433, overlap 246427 GAACCCAAACAAAAA CGCCCGCCG GAT CGGCGGGCG TTTTCGTTTCTGAGG TERM 188 246453 - 246433 - T 100 -19.7 -5.33026 | opp_overlap 246433 246427, overlap 246427 GAACCCAAACAAAAA CGCCCGCCG GAT CGGCGGGCG TTTTCGTTTCTGAGG Rpal_0227 246895 - 246494 - | hypothetical protein Rpal_0228 247848 - 247039 - | hypothetical protein Rpal_0229 247963 - 248997 + | aspartate-semialdehyde dehydrogenase TERM 189 249027 - 249049 + F 100 -16.3 -4.41494 | opp_overlap 249027 GATGTCGACAGGCAA TGGCCGGGG CTCGT CCCCGGCCA TTTTCGTTCGGGGTG TERM 190 249049 - 249027 - f 86 -16.3 -3.12668 | opp_overlap 249027 GATGTCGACAGGCAA TGGCCGGGG CTCGT CCCCGGCCA TTTTCGTTCGGGGTG Rpal_0230 249133 - 249687 + | hypothetical protein Rpal_0231 250483 - 249839 - | Carbonate dehydratase TERM 191 249991 - 250010 + g 72 -7 -4.18494 | overlap 249992 TCATCAGGTTCTCGA TGCTGCGG AACA CCGCGGCC TTTTCGATCCGGGTG Rpal_0232 250664 - 251542 + | Citryl-CoA lyase TERM 192 251687 - 251646 - T 90 -19.5 -2.71364 | gap 1, overlap 251686 TGATGCTTTGAACGA CGTGATTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAATGACG GAGCCTATGGCTACC TERM 193 251728 - 251707 - T 71 -11.5 -3.41051 | CTATGGCTACCAGAA GCGCGTCCT CGTC AGGCCGCGC GCACCGACGCCAGGA Rpal_0233 253409 - 251718 - | methyl-accepting chemotaxis sensory transducer TERM 194 254066 - 254046 - R 100 -14 -4.53036 | CGACAAAGACGAAAA TGGCCGGG GCGAA CCCGGCCA TCACGAAGCTTGATC TERM 195 254169 - 254151 - R 78 -11.6 -3.794 | TGCCAAGCGAGGAAA CCGGGGCG TTA CGCCCAGG CGCGCTCGGTCTTCA Rpal_0234 254764 - 254159 - | 3-isopropylmalate dehydratase, small subunit Rpal_0235 255263 - 254850 - | protein of unknown function DUF1025 Rpal_0236 255369 - 255716 + | putative exported protein of unknown function Rpal_0237 255948 - 256229 + | hypothetical protein TERM 196 256247 - 256267 + F 95 -10.4 -4.4078 | gap 1, opp_overlap 256247 CGGATCGGTTACCAA CGGGCCCGC AAAC GCGG-CCCG TTTTCGTTGCGGCAG Rpal_0238 256340 - 256651 + | hypothetical protein TERM 197 256759 - 256742 - f 76 -12.7 -3.50853 | TTGGTGCAACGACAA TGCGCCG CCTG CGGCGCA GGGAGAGGCGAGATG Rpal_0239 256772 - 257443 + | hypothetical protein TERM 198 257491 - 257458 - T 100 -17.5 -4.60041 | opp_overlap 257459 257464, overlap 257459 257464 ACCGATCCCGAAAAA GCAAAACAGGCGCCC CGAG GGGCGCCTGTTTCGT TGTTAGTTCGACCGG TERM 199 257490 - 257459 - T 95 -21 -3.35542 | opp_overlap 257459 257464, overlap 257458 257464 CCGATCCCGAAAAAG CAAAACAGGCGCCC CGAG GGGCGCCTGTTTCG TTGTTAGTTCGACCG TERM 200 257459 - 257490 + T 100 -18.8 -3.81146 | opp_overlap 257459 257458 257464, overlap 257464 CCGATCCCGAAAAAG CAAAACAGGCGCCC CGAG GGGCGCCTGTTTCG TTGTTAGTTCGACCG TERM 201 257485 - 257464 - T 100 -17.3 -4.77757 | opp_overlap 257459 257464, overlap 257459 257458 CCCGAAAAAGCAAAA CAGGCGCCC CGAG GGGCGCCTG TTTCGTTGTTAGTTC TERM 202 257464 - 257485 + T 100 -17.3 -4.11412 | opp_overlap 257464 257459 257458, overlap 257459 CCCGAAAAAGCAAAA CAGGCGCCC CGAG GGGCGCCTG TTTCGTTGTTAGTTC Rpal_0240 258919 - 257510 - | 3-isopropylmalate dehydratase, large subunit TERM 203 258117 - 258096 - G 75 -11.5 -3.64822 | AGCTCGTGATCGAAA TGCGCGCCG TCGT CGGAGCGCA GCGTCTCCCAATAGC Rpal_0241 259109 - 258996 - | hypothetical protein TERM 204 259199 - 259180 - R 100 -12.8 -5.45652 | opp_overlap 259180 ACGCGCAACAAAAAA GCGCGACC CGAA GGCCGCGC TTTCGAAATCCGAAA TERM 205 259180 - 259199 + r 70 -10.6 -3.57144 | opp_overlap 259180 ACGCGCAACAAAAAA GCGCGACC CGAA GGCCGCGC TTTCGAAATCCGAAA Rpal_0242 259618 - 259229 - | ribosomal protein L19 Rpal_0243 260478 - 259732 - | tRNA (guanine-N1)-methyltransferase TERM 206 259796 - 259828 + g 86 -17.7 -3.14564 | opp_overlap 259815 CGAATGGTTTGCGCC GGTCTGGCGGCCC ACAAATC GGGCCGCCGGGCC TTGGTCAGGGCCTCG Rpal_0244 261151 - 260621 - | 16S rRNA processing protein RimM Rpal_0245 261484 - 261164 - | ribosomal protein S16 TERM 207 261628 - 261597 - R 81 -16.6 -2.78384 | gap 1 GTTGTGGGGAGGAGA TTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAA TGACCGAGAGGGAGA Rpal_0246 263204 - 261654 - | signal recognition particle protein TERM 208 262276 - 262286 + g 72 -4.6 -4.56597 | overlap 262242 262241 TTTTCGGCGTCCAGC GTCG CGG CGGC TTTTTCGACCAGCGA Rpal_0247 263657 - 263926 + | prevent-host-death family protein Rpal_0248 264152 - 265213 + | beta-lactamase domain protein Rpal_0249 265921 - 265223 - | protein of unknown function DUF541 Rpal_0250 266700 - 265918 - | transcription activator effector binding Rpal_0251 266937 - 267818 + | Diaminopimelate epimerase Rpal_0252 267818 - 269089 + | MiaB-like tRNA modifying enzyme Rpal_0253 269761 - 269099 - | hypothetical protein TERM 209 269841 - 269822 - R 75 -15 -2.70708 | overlap 269819 269814 AAGCCAACCACATCA TCGCCCGC GCAG GCGGGCGA TCCAGTATCGGAGAG Rpal_0254 270360 - 269947 - | protein of unknown function DUF55 TERM 210 270230 - 270214 - G 73 -9.3 -3.8969 | overlap 270215 GGAGTGATAGAAGAA TGCGCGG TCG CCGCGCC GCATCGCCACCATGT Rpal_0255 271352 - 270363 - | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) Rpal_0256 272479 - 271388 - | metalloendopeptidase, glycoprotease family TERM 211 272385 - 272424 + g 75 -12 -3.73224 | gap 1, opp_overlap 272380, overlap 272418 TTGGAGAGGAGGCGC CCGCTGCCGTCG-GCGCGA CGC TCGACCACGGCGGCTGCGG TTTCATCGCAGGTGG TERM 212 273415 - 273400 - g 82 -6.1 -4.73388 | opp_overlap 273413 AAGCCGGACGAAAAA GCGCT GCTCGA AGCGC TGGATCGGGCCCTCG Rpal_0257 272704 - 273450 + | Uroporphyrinogen III synthase HEM4 TERM 213 274107 - 274065 - g 72 -11.8 -3.54459 | overlap 274048 274047 CGAAGCGCGGCCAAA GGCAGCGTCCGAAGGGGCTG CCG CTGCCGATCCGGCCGCTACC GGCCGGATCGATGCG TERM 214 274390 - 274369 - g 83 -12.9 -3.87815 | GCCGAGGCGGAGAAA CCGGCGCCG AAGA CGGCGCCCG CAGAAGACGGCGCTC Rpal_0258 273502 - 274911 + | hypothetical protein Rpal_0259 274920 - 276617 + | HemY domain protein TERM 215 276610 - 276630 + T 76 -10.3 -3.85389 | opp_overlap 276586, overlap 276583 GGGGTTACCGGCCGC CGCGCTGAG TTG CACGGCGCG TTTCGGTTGTTGGGA TERM 216 276693 - 276661 - T 76 -7.5 -4.38712 | opp_overlap 276680 276690 276691, overlap 276664 276666 CGGAGTTCGACAAAA CCACATCGGCGGACG CTC CGGCCGCCGGTTCAG GCGCCCTGGTTCTTG TERM 217 277160 - 277189 + T 70 -12.2 -3.14931 | opp_overlap 277160 277165, overlap 277165 GCAGGGGGCCAAATA GAAAAGCCCGCG GCGATG CGCGGGCTTTTG TTGGTACCGGCTCAC TERM 218 277189 - 277160 - T 72 -12.2 -3.35046 | opp_overlap 277160 277165, overlap 277165 GCAGGGGGCCAAATA GAAAAGCCCGCG GCGATG CGCGGGCTTTTG TTGGTACCGGCTCAC TERM 219 277184 - 277165 - T 100 -12.1 -4.78848 | opp_overlap 277160 277165, overlap 277160 GGGCCAAATAGAAAA GCCCGCG GCGATG CGCGGGC TTTTGTTGGTACCGG TERM 220 277165 - 277184 + T 100 -12.1 -4.71426 | opp_overlap 277165 277160, overlap 277160 GGGCCAAATAGAAAA GCCCGCG GCGATG CGCGGGC TTTTGTTGGTACCGG Rpal_0260 278091 - 277309 - | putative methyl-accepting chemotaxis sensory transducer TERM 221 279553 - 279584 + G 72 -14.4 -3.01924 | gap 1, opp_overlap 279525 CGCCGCGTCGCGCAA CCCGG-CGCTGGCGG TGG TCGCCAGCGGCCGCG TATTCGCCGAACGTA Rpal_0261 278933 - 279724 + | cobalamin B12-binding TERM 222 279751 - 279777 + F 100 -21.6 -3.19192 | overlap 279776 CCTTTCGACATCTCA CGGCCGCTTCGG ATA CCGAGGCGGCCG TTGCGTTGAGTCGCA Rpal_0262 279898 - 280983 + | hypothetical protein Rpal_0263 282309 - 281011 - | RiBisCO-like protein Rpal_0264 282846 - 282424 - | protein of unknown function UPF0047 TERM 223 283164 - 283186 + G 75 -3.2 -4.74215 | overlap 283144 283159 283182 CCCGGCGGAGGTCCG CGGCGGCTTC ATC GGCGTCGACG TTTTCTTCGTGATCT TERM 224 284923 - 284890 - g 73 -13.1 -3.27774 | gap 1 TATTGCAACGATCAA GGCTGCCTGCTGGCGG TGC CCGGCAGC-GGCACCC CGGTGACGTTCGACG Rpal_0265 283072 - 285009 + | acyltransferase 3 Rpal_0266 286228 - 285062 - | hypothetical protein TERM 225 286112 - 286066 - G 70 -10.2 -3.64822 | gap 1, overlap 286099 AGCCGTGCAGCGAAA GATCGAAC-GGCACCTGCTGG GTGACG CCGACAAGTGCCGGCCCGATC CGAACGGCGTGCGAC Rpal_0267 287643 - 286231 - | membrane bound O-acyl transferase MBOAT family protein TERM 226 287954 - 287933 - H 76 -10.1 -3.89346 | gap 1 CCCGCATCCGAGAAA CGG-CGCGCC GTG GGCACGACCG TGGGCAGTCGTATGC TERM 227 288649 - 288603 - g 72 -7.1 -4.18018 | gap 2 CGCCTTCATTGAAAA GCTGACCGCCGGCATGCCGGGCG GTG CGC-CGAC-CGCCGCCGAGCTGC TCCAGGAAGCCGAAG TERM 228 289115 - 289144 + G 74 -9.9 -3.7821 | opp_overlap 289115, overlap 289116 CGACCGACGACGCAA CCGTCGAGGGCCG CAAG CGGCTGTCGACGA TTCTGTTCTCGTAGT Rpal_0268 288238 - 289158 + | thioredoxin Rpal_0269 289185 - 289862 + | peptidase S16 lon domain protein Rpal_0270 289952 - 290149 + | protein of unknown function DUF343 Rpal_0271 291505 - 290285 - | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family TERM 229 291364 - 291329 - G 70 -11 -3.61715 | gap 1 GAGCGCCTCGAACAA CCGCCGGCACGCCGCGA CGA TCGCGGTG-GCGCGCGG GTCGCGGCTCGGTCG TERM 230 292589 - 292641 + G 72 -14 -3.05816 | opp_overlap 292581 CCCAAGAGGGCTCGG TGCGCGAACGCCGCGACACGTCCA AACCC TGAATGGGGCGAGGCGGTCGCGCA TTCAATCGGACCTCA Rpal_0272 291745 - 292620 + | acyl-CoA thioesterase II Rpal_0273 293487 - 292654 - | hypothetical protein Rpal_0274 293576 - 294157 + | transcriptional regulator, TetR family Rpal_0275 294303 - 294641 + | nitrogen regulatory protein P-II TERM 231 295258 - 295288 + G 76 -6 -4.57073 | overlap 295255 CATCTGCGTCTATGT GCCGCTGGCGCA TTGGATC TGGGGCGGCGGC TTTTTGGGCGCAATG Rpal_0276 294716 - 296047 + | ammonium transporter TERM 232 296110 - 296145 + F 81 -15.6 -3.01712 | gap 1 TCATTGTGTCCGCAA GCT-GGCGTGCCTGATT ATT GATCAGGCATGCCCAGC TGTTGAGCGCGACCG Rpal_0277 296357 - 296695 + | nitrogen regulatory protein P-II Rpal_0278 296733 - 298175 + | ammonium transporter TERM 233 298261 - 298286 + F 100 -18.3 -4.57482 | TGTCCGAACCGTCGA GGGGTCCCAGC GCAA GCTGGGGCCCC TTTCTTTATGGCTCG Rpal_0279 298294 - 298641 + | DNA polymerase beta domain protein region Rpal_0280 298743 - 298988 + | protein of unknown function DUF86 Rpal_0281 299111 - 300337 + | aminotransferase class I and II Rpal_0282 300351 - 302819 + | cell divisionFtsK/SpoIIIE Rpal_0283 302837 - 303778 + | outer membrane lipoprotein carrier protein LolA Rpal_0284 304067 - 304879 + | exodeoxyribonuclease III Xth Rpal_0285 305380 - 304931 - | cyclic nucleotide-binding protein TERM 234 305153 - 305183 + g 85 -10.4 -4.2231 | gap 1, overlap 305179 GCCGATCAGATCGCC CGGCCGCG-CCAC CGTCTC GTGGACGCCGCCG TTTTCCATGGTGATT Rpal_0286 306106 - 305420 - | two component transcriptional regulator, winged helix family TERM 235 306702 - 306712 + G 95 -8.2 -5.16841 | opp_overlap 306678 306680, overlap 306679 306698 GCGGATTGCCGGCCG CGGC AGC GCCG TTTTTCTTCATCTGG Rpal_0287 306271 - 306834 + | hypothetical protein Rpal_0288 307575 - 306916 - | alanine racemase domain protein TERM 236 307825 - 307776 - g 72 -8.6 -4.15222 | gap 3 ATCGTCCGCAAGAAA GCCAAGC-TCA-GAGCCTTGCTCGG CAT CCGTGCCAGGCTCGTGGTGCT-GGC GCTCATCCTGGTCTG Rpal_0289 307746 - 309419 + | diguanylate cyclase TERM 237 309497 - 309515 + F 74 -11.6 -3.53012 | overlap 309498 GTTTCATGGCCTAGT CCGCGCGC TTC GCGCGCGA TTTGACCCGAGCCCC TERM 238 309498 - 309514 + F 78 -15.1 -2.71712 | overlap 309497 TTTCATGGCCTAGTC CGCGCGC TTC GCGCGCG ATTTGACCCGAGCCC TERM 239 310308 - 310272 - g 73 -12.9 -3.28712 | CCGCTGGCCCGACAA GGTGCGGCTGATGCAGC GCA ACTGGATCGGCCGCTCC GAAGGCCTGATGGTG Rpal_0290 309625 - 312255 + | leucyl-tRNA synthetase Rpal_0291 312242 - 312805 + | hypothetical protein TERM 240 313616 - 313632 + G 71 -9.3 -3.85698 | overlap 313612 AGATCATCCTGGCGG CGCAGCG CCA CGCCGCG TTTCTGCACAAGACC Rpal_0292 312862 - 313893 + | DNA polymerase III, delta subunit TERM 241 314108 - 314073 - T 74 -14 -2.94099 | gap 1 GTTTGTGAGTATAGA TTCCGGGTTCGCGCAGC TAC ACCGCGCGC-CCCGGAA TGACGAACGAGAGAT Rpal_0293 315045 - 314155 - | parB-like partition protein TERM 242 314269 - 314283 + g 74 -5.6 -4.56597 | overlap 314263 CACCTTCATGCCGAG CGCATC GCT GAGGCG TTTTTCGAGCGCCAG Rpal_0294 316072 - 315218 - | Cobyrinic acid ac-diamide synthase TERM 243 315951 - 315913 - G 70 -11.7 -3.39803 | gap 1, opp_overlap 315931 GATCGAGATCGACAA TCAGCAC-GCGCTCGCCG ATCG CGGCCAGGGCCGTGCCGA GATTGATCGCGGTGG Rpal_0295 316771 - 316100 - | methyltransferase GidB TERM 244 316794 - 316806 + r 80 -6.2 -4.8066 | CACTGCGGGGGAGAC GGCC GTAGA GGCC TTTTTAGATTATATT Rpal_0296 318812 - 316944 - | glucose inhibited division protein A TERM 245 317381 - 317413 + g 72 -4.8 -4.4891 | gap 1, overlap 317375 317382 TGATCGACAGCGATT GGGCAAGCGCTTTCG CGTC CGAAAGTGCG-GCCA TTTTGTCATGATGGA TERM 246 318287 - 318272 - G 74 -10.4 -3.82031 | opp_overlap 318280 CGAACGACGATGAAA GCCCCA TCGC TGGGGC CTCGTCGATCCGGCC Rpal_0297 320303 - 318978 - | tRNA modification GTPase TrmE TERM 247 320366 - 320346 - R 100 -16.1 -5.33026 | opp_overlap 320346 GAACGCAAACAAAAA GGGCGCCCC GTG GGGACGCCC TTGATGGCCGGCTAT TERM 248 320346 - 320366 + r 76 -13.9 -3.14683 | opp_overlap 320346 GAACGCAAACAAAAA GGGCGCCCC GTG GGGACGCCC TTGATGGCCGGCTAT Rpal_0298 321656 - 320391 - | transcription termination factor Rho Rpal_0299 322356 - 321916 - | hypothetical protein TERM 249 322744 - 322728 - H 85 -5.8 -5.06414 | gap 1, opp_overlap 322739, overlap 322729 322730 GCCTGTGAAGAAAAA GC-CGGG TTAT CCCGAGC CCGACGGCCGTGGCT Rpal_0300 322811 - 323650 + | protein of unknown function DUF299 Rpal_0301 323647 - 324255 + | Maf family protein Rpal_0302 324352 - 324951 + | dephospho-CoA kinase Rpal_0303 324987 - 325685 + | DNA polymerase III, epsilon subunit TERM 250 325734 - 325707 - T 87 -17.1 -2.90496 | overlap 325710 GTCTTCCTGAAACGA CAATGCCCGGC GCATCG GCCGGGCATTG CAAAAGTCGCGAGCG TERM 251 325731 - 325710 - T 77 -13 -3.60151 | overlap 325707 TTCCTGAAACGACAA TGCCCGGC GCATCG GCCGGGCA TTGCAAAAGTCGCGA Rpal_0304 326238 - 325765 - | protein-export protein SecB TERM 252 326590 - 326576 - H 86 -12.8 -4.07568 | opp_overlap 326570 CCTGCTGTGCCAAAA CGCGCC ATT GGCGCG CCGCGGTTGATGCCT TERM 253 326651 - 326618 - H 73 -11 -3.56643 | gap 2 CCTACATGGTGTAAA CCGGCTCTCTGCCGCG TTGG CGCCGC-GAG-GCCGG AGACCAAAGCCGCGC TERM 254 326670 - 326660 - H 71 -8.2 -3.83205 | overlap 326661 AGGCCGGAGACCAAA GCCG CGC CGGC AGCCCCGGCCCGATC TERM 255 327167 - 327154 - g 74 -8.1 -4.18506 | GGATCGCGAAAAGAA CGACC TCAA GGTCG AGACCCGCTTCGTGT Rpal_0305 326702 - 327409 + | import inner membrane translocase subunit Tim44 TERM 256 328429 - 328383 - g 71 -12.3 -3.2396 | gap 2, overlap 328373 AAGGACGACGATGAA GCGATCG-GC-GCCCAAGGCGTG CCG CTCACCCCAGGCCGCTCGATCGC CGTCGACAAGGGTCT Rpal_0306 327387 - 328880 + | MltA domain protein TERM 257 329082 - 329062 - g 73 -13.9 -3.14132 | CGTGCCGGCCATCAA GCCGGCGCC GGT GGCGCCGCC GCAACCGCTCAAGCG Rpal_0307 328886 - 329470 + | Smr protein/MutS2 Rpal_0308 331108 - 329807 - | heat shock protein HslVU, ATPase subunit HslU Rpal_0309 331761 - 331150 - | hypothetical protein TERM 258 331744 - 331689 - G 73 -13.4 -3.31792 | gap 4, overlap 331692 CCAGCAGGGCCAGAA CG-ACGGCCAGTG-C-CCAGCGGACCGG CAGA CCGG-CCGCGGACGACACCGGCCGTTCG GCCCCGGCCATGCTC TERM 259 331740 - 331692 - G 71 -13.9 -2.83271 | gap 3, overlap 331689 GCAGGGCCAGAACGA CGGCCAGTG-C-CCAGCGGACCGG CAGA CCGG-CCGCGGACGACACCGGCCG TTCGGCCCCGGCCAT Rpal_0310 332327 - 331758 - | 20S proteasome A and B subunits TERM 260 332469 - 332492 + H 72 -3.7 -4.56597 | opp_overlap 332487, overlap 332471 CAGTAGCGAAGGTGT CACCGGCCT GTTAAA AGACCGGCG TTTTTACCGGAGAGC Rpal_0311 332515 - 333108 + | Imidazoleglycerol-phosphate dehydratase Rpal_0312 333136 - 333657 + | hypothetical protein Rpal_0313 333654 - 334304 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Rpal_0314 334301 - 335038 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Rpal_0315 335049 - 335816 + | imidazoleglycerol phosphate synthase, cyclase subunit TERM 261 336016 - 336047 + G 77 -16.6 -2.62184 | overlap 336018 GGCGGTCGAGATGGT GATCGCTGCGGTCG AGAA CGACCGCGGCCATC TGATCTCCGAAACCG Rpal_0316 335870 - 336193 + | phosphoribosyl-ATP diphosphatase TERM 262 336194 - 336172 - f 71 -5.5 -4.25104 | gap 1 GGGCCTGGAGGAAAA GGC-GTCGCG CAAG CGCGACTGAC GGCATCGGCCGCACC TERM 263 337189 - 337179 - g 70 -2.4 -4.59773 | GCTGATCCTGAAAAA GGGC GCG GACC ACGTGGTGGACTCGG Rpal_0317 336268 - 337224 + | pantothenate kinase TERM 264 337270 - 337301 + T 71 -5.9 -4.36914 | gap 2, overlap 337271 GCTTGACCCGCGGAT C-CATCG-CGTGCGC AAGC GCGCGTGACGATGTG TTTTCTCGAAGACGA TERM 265 337271 - 337299 + T 71 -9.6 -3.79419 | gap 1, overlap 337270 CTTGACCCGCGGATC CATCG-CGTGCGC AAGC GCGCGTGACGATG TGTTTTCTCGAAGAC Rpal_0318 338321 - 337371 - | putative hemolysin Rpal_0319 340392 - 338482 - | integral membrane sensor hybrid histidine kinase TERM 266 339589 - 339626 + g 73 -11.3 -3.70076 | gap 1, opp_overlap 339614 GCGGAGTCCGTCGCT CTGGTCGCCTCGCTC-GA CGA TCAGAGCGACGCCGCCAG TTTCAGTGAATTTGA TERM 267 340022 - 340078 + g 70 -10.1 -3.65514 | gap 3, opp_overlap 340018, overlap 340046 340051 340053 ATTGCCAGCAACCGC GACTTG-GCGTGGTTCGCGGCGTCGGCG CTCT CGC-G-CGCCGCGATCAGCGCGCGTGTC TTGCTTTGATTTGGC TERM 268 340051 - 340076 + g 70 -11.7 -3.39643 | overlap 340022 340046 340053 CGCGGCGTCGGCGCT CTCGCGCGCCG CGAT CAGCGCGCGTG TCTTGCTTTGATTTG TERM 269 340053 - 340074 + g 73 -12.9 -3.24804 | overlap 340051 340022 340046 CGGCGTCGGCGCTCT CGCGCGCCG CGAT CAGCGCGCG TGTCTTGCTTTGATT Rpal_0320 342057 - 340519 - | Mg chelatase, subunit ChlI TERM 270 342149 - 342128 - R 100 -18.7 -4.26351 | opp_overlap 342147 CATTAAGTGAACAAA CCGGCGGGC ATTC GCCCGCCGG TGCGATGTCAGGCAC TERM 271 342147 - 342166 + r 73 -2.8 -4.72986 | opp_overlap 342128 CGGGCATTCGCCCGC CGGTGC GATGTCAG GCACTG TTTTTGGTGCGGCTC Rpal_0321 342381 - 342157 - | hypothetical protein Rpal_0322 343034 - 342378 - | putative autoinducer (acylhomoserine lactone) synthase TERM 272 343074 - 343042 - R 74 -9.8 -3.78953 | overlap 343029 343043 ACCTGCATGATGAAA TTCCCCTCCTGCAG TGGGT CTGCAGGCGGGAAC AGTGCAGGTGCGAAC TERM 273 343073 - 343043 - R 70 -13.3 -2.87051 | overlap 343029 343042 CCTGCATGATGAAAT TCCCCTCCTGCAG TGGGT CTGCAGGCGGGAA CAGTGCAGGTGCGAA Rpal_0323 343851 - 343120 - | transcriptional regulator, LuxR family Rpal_0324 345029 - 344088 - | glutathione synthetase Rpal_0325 345494 - 345102 - | protein of unknown function UPF0102 Rpal_0326 346437 - 345481 - | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase TERM 274 345981 - 345953 - G 100 -3.8 -6.11644 | gap 1, overlap 345955 CCATCGAAAAAAAAA CGGTCGGTCGGCA ACCC TGC-GAGCGACAG TGCAACCAACACGGC TERM 275 346384 - 346418 + g 78 -9.9 -4.13654 | overlap 346385 CAGAAACGTTCGTGC GTTCGGTTCCGCCGC AGCGG GCGGCGGTGCTGAAA TTTCTGGTTTGACGC TERM 276 346385 - 346417 + g 70 -13.4 -3.0771 | overlap 346384 AGAAACGTTCGTGCG TTCGGTTCCGCCGC AGCGG GCGGCGGTGCTGAA ATTTCTGGTTTGACG TERM 277 347364 - 347334 - g 83 -8.3 -4.62069 | opp_overlap 347343, overlap 347307 347336 GTCGCATTCGAAAAA TACGGCGCC-GACCG TGC CGGTCCGGCGCGG-A CCATTGCGGCCTCTC TERM 278 347363 - 347336 - g 84 -13.4 -3.92746 | gap 1, opp_overlap 347343, overlap 347307 347334 CGCATTCGAAAAATA CGGCGCC-GACCG TGC CGGTCCGGCGCGG ACCATTGCGGCCTCT Rpal_0327 346656 - 347855 + | extracellular ligand-binding receptor Rpal_0328 348235 - 347873 - | transcriptional regulator, HxlR family Rpal_0329 348306 - 348635 + | hypothetical protein Rpal_0330 349797 - 348640 - | oxygen-independent coproporphyrinogen III oxidase Rpal_0331 350419 - 349787 - | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family Rpal_0332 351184 - 350471 - | ribonuclease PH Rpal_0333 351340 - 352428 + | heat-inducible transcription repressor HrcA Rpal_0334 352519 - 353142 + | Ribulose-phosphate 3-epimerase TERM 279 353237 - 353217 - T 100 -14 -5.03994 | opp_overlap 353217 TTTGAGAGAGAAAAA CGACGCGC CGCTC GCGCGTCG TTTGCGTTTGGTCAG TERM 280 353217 - 353237 + T 86 -14 -3.87149 | opp_overlap 353217 TTTGAGAGAGAAAAA CGACGCGC CGCTC GCGCGTCG TTTGCGTTTGGTCAG Rpal_0335 354190 - 353249 - | hypothetical protein TERM 281 353647 - 353620 - G 72 -13.4 -3.1372 | gap 1, opp_overlap 353623, overlap 353618 CATCGGTCAGCAATA GCGCGG-CGCCGG GCG CCAGCGTCCGCAC CGTCTTGAAGTCGCC Rpal_0336 354525 - 356420 + | chaperone protein DnaK TERM 282 356457 - 356497 + F 100 -17.6 -3.7511 | GCGACGAGGACCATG CCCCCATCTGACGAACGC CATCC GCGGTCATCAGGTGGGGG TTGTCTTGTAAGGCG Rpal_0337 356635 - 357774 + | chaperone protein DnaJ Rpal_0338 357868 - 358473 + | ribosomal RNA adenine methylase transferase Rpal_0339 358575 - 359156 + | NADPH-dependent FMN reductase TERM 283 359667 - 359650 - g 73 -14.1 -3.14132 | opp_overlap 359649 359650 TGTTCGCCGGAGGAA GCCGCGC ATCT GCGCGGC ATTGTCGGACCCGAG Rpal_0340 359164 - 359877 + | orotidine 5'-phosphate decarboxylase Rpal_0341 359903 - 360211 + | protein of unknown function DUF1330 Rpal_0342 360308 - 361123 + | Dihydrodipicolinate reductase Rpal_0343 362717 - 361203 - | phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Rpal_0344 363741 - 362809 - | transcriptional regulator, AraC family Rpal_0345 364271 - 363756 - | putative membrane protein of unknown function TERM 284 363814 - 363824 + g 87 -6.8 -5.06414 | overlap 363791 GCCATCAAGGCCTTG GCGA AGT TCGC TTTTTCTTCCGCGCC Rpal_0346 364294 - 365079 + | endonuclease III Rpal_0347 366760 - 365195 - | peptidase S10 serine carboxypeptidase Rpal_0348 367857 - 366889 - | magnesium chelatase accessory protein Rpal_0349 369174 - 368431 - | protein of unknown function DUF540 Rpal_0350 371094 - 369262 - | (Isocitrate dehydrogenase (NADP(+))) kinase TERM 285 370282 - 370335 + g 72 -13.8 -3.05384 | gap 1 GTCCTTCTCGTTGAG CAGCGCGATCAGCAGCGGCAGGTTG CGCAT CGGCATGTCGCCGC-GATCGCGCAG TTGGATCCGGCCGAC Rpal_0351 372281 - 371430 - | alpha/beta hydrolase fold TERM 286 372595 - 372614 + G 77 -10.7 -3.81951 | TTTGGGACCCCGCGG GCGCCGT GCTCGA ACGGCGC TTTGGTGGTGTGCCC TERM 287 372900 - 372926 + G 77 -5.8 -4.58395 | overlap 372885 CGCGGTTATCGGTGG GCTTATCGCGTT GTG AACTCGCTGAGC TTTTTGCCGCATCGA Rpal_0352 372492 - 373664 + | DNA-cytosine methyltransferase TERM 288 373913 - 373926 + G 73 -3.7 -4.65895 | opp_overlap 373889, overlap 373910 373914 CGCACCACGACGCCG ACCCG GAAT CGGGA TTTTTGGCTCGCCAA Rpal_0353 373661 - 374077 + | DNA mismatch endonuclease Vsr TERM 289 374845 - 374826 - g 70 -6.4 -4.2123 | GACGCACGCAACAAA TCCGCC TTCAAATG GGCGGA GGGCGAAACCGAAAT Rpal_0354 374082 - 374903 + | hypothetical protein Rpal_0355 376721 - 374910 - | GTP-binding protein LepA TERM 290 378220 - 378178 - g 78 -14.1 -3.53012 | opp_overlap 378205 CGCTGGGCTTCGAAA CCGCGGACC-TCGCCGCGCTG AAG CAGCG-GGCGGCGGCGCGCGG CGCCATCCTGGTGTG Rpal_0356 376866 - 378404 + | hypothetical protein TERM 291 378409 - 378461 + T 75 -12.1 -3.61894 | gap 3, opp_overlap 378404 378405, overlap 378412 GCGCGAAATAGCGGG GAGTAGCCGCCGGCGCGGCGGCCTGG CCAA CC-GGCC-TTGCGGCGG-GGCTATTC TTCTTCGCCGAACTT TERM 292 378412 - 378458 + T 76 -10.2 -3.9461 | gap 3, opp_overlap 378404 378405, overlap 378409 CGAAATAGCGGGGAG TAGCCGCCGGCGCGGCGGCCTGG CCAA CC-GGCC-TTGCGGCGG-GGCTA TTCTTCTTCGCCGAA Rpal_0357 378788 - 378456 - | Phosphotransferase system, phosphocarrier protein HPr Rpal_0358 379186 - 378785 - | PTS system fructose subfamily IIA component Rpal_0359 379841 - 379374 - | HPr kinase TERM 293 379719 - 379672 - G 76 -14.9 -3.12895 | opp_overlap 379689 379712, overlap 379668 GGTTCCATGAAGACA CGGTCGTCGCCGATCAG-TTCCG CGCG CGGAATCTGTCCGGCG-CGCCCG GCCAGGATCAGCGCC Rpal_0360 381583 - 379838 - | integral membrane sensor signal transduction histidine kinase TERM 294 380350 - 380401 + g 79 -13.1 -3.63782 | gap 2, opp_overlap 380320 380378 CCTGGCGCTGCAATT CGGCGTCGAGCCGGCTGGCATCGGA AATG TCCGAGATCAGTCGG-TCGA-GCCG TTTGACGTCATGTTC TERM 295 381041 - 381055 + g 71 -3.4 -4.58395 | CGCGATCATCGCCCG CTCGAC GAT GCCGGG TTTTTCGGCGGTCGG Rpal_0361 382447 - 381746 - | two component transcriptional regulator, winged helix family TERM 296 382758 - 382724 - g 72 -8.5 -4.09739 | CGAAGCTCGCCAAAA CGC-TGCTGCGCCGTCG CCG CGAGGGCGC-GCTCGCG ACGCTGATGGAAAAT TERM 297 382785 - 382773 - g 80 -9.1 -4.18494 | opp_overlap 382773 382771 GACGCTGATGGAAAA TGGCG GTG CGCCA TATTGCTCACTGGTA Rpal_0362 382681 - 383415 + | pyridoxamine 5'-phosphate oxidase-related FMN-binding Rpal_0363 383604 - 385217 + | Phosphoenolpyruvate carboxykinase (ATP) TERM 298 385246 - 385266 + F 100 -15.4 -5.2015 | opp_overlap 385240 385246 CGATTGAAATACGAA GGGCGGCC CGCAA GGCCGCCC TTTTTCTATTCTTCC TERM 299 385266 - 385246 - f 89 -16.1 -3.47029 | opp_overlap 385246, overlap 385240 CGATTGAAATACGAA GGGCGGCCC GCA AGGCCGCCC TTTTTCTATTCTTCC TERM 300 386424 - 386412 - g 71 -9.1 -3.77196 | opp_overlap 386412, overlap 386413 GGATGATGTAGCAAA GGCTC GAG GAGCC TTCCCGAGCGTTGCG TERM 301 387247 - 387262 + G 77 -10.4 -3.90588 | GCCCTTGCTGCTCAG GCGCCA GTCA TGGCGC TTTGGTTGGCCGCTC Rpal_0364 385465 - 388350 + | hypothetical protein TERM 302 388566 - 388546 - T 100 -16.1 -4.35044 | opp_overlap 388546 CGATTGAAATACAAA GGGCGGCCC GCA AGGCCGCCC TTTTTCTTGGCCGTG TERM 303 388546 - 388566 + T 100 -15.4 -5.07486 | opp_overlap 388546 CGATTGAAATACAAA GGGCGGCC CGCAA GGCCGCCC TTTTTCTTGGCCGTG Rpal_0365 389480 - 388605 - | conserved hypothetical secreted protein TERM 304 389526 - 389551 + H 71 -12.5 -3.06183 | gap 1, opp_overlap 389510 GTGATGCGATCGCGC CGACGCTGCCCG GAT CGGGC-GCGACG TTCGATCGGCATCAG TERM 305 390328 - 390272 - g 70 -9.9 -3.65902 | opp_overlap 390312, overlap 390277 390282 390314 TCGACCGGATCGAAA CCGAACTCAACGAAGCGCTGCCGGGCG ATC CGCGCGACACCACTTCGCCGCGGGCGA TGGCGCAGGATCTGC TERM 306 390323 - 390277 - g 73 -13.6 -3.29324 | opp_overlap 390312, overlap 390272 390282 390314 CGGATCGAAACCGAA CTCAACGAAGCGCTGCCGGGCG ATC CGCGCGACACCACTTCGCCGCG GGCGATGGCGCAGGA TERM 307 390318 - 390282 - g 78 -15.1 -3.22448 | opp_overlap 390312, overlap 390277 390272 390314 CGAAACCGAACTCAA CGAAGCGCTGCCGGGCG ATC CGCGCGACACCACTTCG CCGCGGGCGATGGCG Rpal_0366 389770 - 390645 + | Beta-lactamase TERM 308 390628 - 390678 + T 84 -8.1 -4.44667 | gap 2, overlap 390630 390667 390669 390673 GGCGCCGCGGTGGCG GACGCCATGCGCGGCTGAGCCGCGC GCG GCGCGTCACGACCGC-TA-GGCGGC TTTCTTCTTCGCCGC Rpal_0367 391788 - 390670 - | Endonuclease/exonuclease/phosphatase TERM 309 391452 - 391438 - G 75 -7.1 -4.32857 | overlap 391434 GCGGTTAAACAGAAA GGCGA GCCGT TCGCC GTTGCCGCCGTCGGC Rpal_0368 392670 - 391867 - | protein of unknown function DUF81 Rpal_0369 392764 - 393660 + | beta-lactamase domain protein Rpal_0370 393759 - 394121 + | hypothetical protein TERM 310 394186 - 394206 + T 76 -14 -3.18571 | overlap 394184 394181 394181 CATCAGCTGTCGTTA TGGCCGGG CTGGT CCCGGCCA TCTGTGTTTCCAGGC TERM 311 394305 - 394286 - T 100 -12.1 -5.33405 | GCGACCAAACAAAAA CCCCGCC TGTGAG GGCGGGG TTCGACGTCATCAGC Rpal_0371 395232 - 394333 - | RNA polymerase, sigma 32 subunit, RpoH TERM 312 394685 - 394702 + g 71 -12.7 -3.25823 | opp_overlap 394682 GCGTTGAGCGAAGCG TCGCCGC CGAG GCGGCGA TTCATGTCGACCACG TERM 313 395175 - 395158 - G 70 -11.3 -3.62096 | CTCGAGCATCGGAAA CTTGCGG ATTT CCGCAAG GTAGCGAGCAAGGCC Rpal_0372 396458 - 395454 - | pseudouridine synthase, RluA family TERM 314 395589 - 395628 + g 85 -16.4 -3.37245 | gap 1, overlap 395590 CTGCCGTCCGAGCCC TGCCAACGCGGCGCGCCCC GCC GGGGCGAGCTG-GTTGGCC TTGGTCTTGAAGTGC TERM 315 395590 - 395627 + g 93 -19.9 -2.62026 | gap 1, overlap 395589 TGCCGTCCGAGCCCT GCCAACGCGGCGCGCCCC GCC GGGGCGAGCTG-GTTGGC CTTGGTCTTGAAGTG TERM 316 395960 - 395981 + g 72 -8.7 -4.14257 | gap 1 CGTGGTCGGCGAATT GCGCGCTCAG GGA CTG-GTGCGC TTTGTCGTTCTTGGC Rpal_0373 396501 - 396836 + | hypothetical protein Rpal_0374 399746 - 397224 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 317 398056 - 398072 + g 73 -9.3 -3.93256 | opp_overlap 398051 GGCTCGAACAGCTGC GCCCGGC CGC GCCCGGC TTCTTTGGCCATATA Rpal_0375 401131 - 399947 - | methionine gamma-lyase TERM 318 401433 - 401460 + G 72 -8.3 -4.14598 | overlap 401411 GGCGCTGGTCGACCG CGCCGCGGTCG GGCTAG CGGTCACGGCG TTTGCTTTCATTCGG Rpal_0376 401242 - 401727 + | transcriptional regulator, AsnC family Rpal_0377 402165 - 401728 - | thioredoxin TERM 319 401792 - 401809 + g 75 -14.1 -3.28924 | ATCGCGCCCGAGGTC CGGGCGC GCTC GCGCCCG TTGTCGAACAGGATC Rpal_0378 403288 - 402305 - | zinc-binding alcohol dehydrogenase family protein Rpal_0379 403583 - 403362 - | ChaB family protein Rpal_0380 403814 - 404536 + | protein-L-isoaspartate O-methyltransferase TERM 320 404754 - 404770 + G 72 -13.7 -3.01924 | GATCACCGACATTGC GCTCGGC GTC GCCGAGC TGTTCGGCGCCCATG Rpal_0381 404689 - 405513 + | UspA domain protein TERM 321 405615 - 405669 + T 71 -5.7 -4.25681 | overlap 405575 405614 405618 TCAGGCCGTTTCCAC TAC-GTCGGGATTCCGGGTTCGCTTGC TAC GCAAGCGC-CCCGGAATGACCACTGGA TTTCTTCGCTTCGCT Rpal_0382 406990 - 405710 - | glycoside hydrolase family 4 TERM 322 407110 - 407091 - H 73 -12.8 -3.22521 | opp_overlap 407091, overlap 407086 CGGATATGAAGTGAA CCGCACCC GTGC GGGCGCGG TCTTGACGCCGATCA Rpal_0383 407214 - 408152 + | 1-phosphofructokinase TERM 323 409198 - 409243 + G 79 -13.2 -3.72576 | gap 1, opp_overlap 409187, overlap 409199 AGCACGTCTTCGCGC GCGACGACGAG-GCGAGGCGC GAGGG GCGCCGCGTGCTCGACGTCGA TTTCATCGAAGCGCA TERM 324 409199 - 409242 + G 79 -16.7 -2.83403 | gap 1, opp_overlap 409187, overlap 409198 GCACGTCTTCGCGCG CGACGACGAG-GCGAGGCGC GAGGG GCGCCGCGTGCTCGACGTCG ATTTCATCGAAGCGC Rpal_0384 408267 - 410579 + | oxidoreductase alpha (molybdopterin) subunit Rpal_0385 410851 - 412113 + | glucose-1-phosphate adenylyltransferase TERM 325 412934 - 412967 + G 73 -13.8 -3.12351 | opp_overlap 412927 412924 412952 412953, overlap 412957 412961 CGAAAGCATCGCAGC CCGCGCCCGCAACA AGAAGG TGCTGCAGGCGCGG TTCGGTCTGAAGCCC Rpal_0386 412110 - 413561 + | glycogen/starch synthase, ADP-glucose type Rpal_0387 413707 - 414507 + | Enoyl-CoA hydratase/isomerase Rpal_0388 414504 - 415076 + | protein of unknown function DUF1566 Rpal_0389 415811 - 415092 - | DNA repair protein RadC Rpal_0390 416148 - 415906 - | hypothetical protein TERM 326 416884 - 416863 - g 93 -10.1 -4.63932 | opp_overlap 416862 CATCGTCGAACAAAA GTCCGGCCA TTTT CAGCCGGAC CTGTTCGAGGATCAC TERM 327 417167 - 417141 - g 79 -3.6 -4.85782 | CTGGGCAAAAAGAAA TGCTGCTGCC GATCGCA GGTAGCGGCA CCGGCAAGGCGAAGG Rpal_0391 416255 - 417250 + | Ku protein Rpal_0392 418187 - 417363 - | methionine aminopeptidase, type I TERM 328 418054 - 418018 - G 81 -8 -4.64334 | gap 1, opp_overlap 418047 AAGTCGCGAACAAAA TCGTCGATCCGCGAGGT CGGA ACCCC-CGGCTTGACGA TGTCGACGAGTTCGT Rpal_0393 418383 - 420176 + | sodium/hydrogen exchanger Rpal_0394 421163 - 420201 - | peptidase U6 penicillin-insensitive murein endopeptidase TERM 329 421592 - 421570 - g 79 -2.6 -5.06414 | opp_overlap 421586, overlap 421573 421575 CCGGCTGAAGAAAAA GAAGACGG CCCGAAT CCGTCCGC CGGCCGGCAGCGCTA TERM 330 421589 - 421573 - g 77 -5.1 -4.63592 | opp_overlap 421586, overlap 421570 421575 GCTGAAGAAAAAGAA GACGG CCCGAAT CCGTC CGCCGGCCGGCAGCG TERM 331 421669 - 421652 - g 78 -14.1 -3.54307 | AAGACGTTGTCGAAA CCGCGCC GGAC GGCGCGG CCGGCGGACGTTGCA Rpal_0395 421544 - 423781 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpal_0396 425553 - 423796 - | Alkaline phosphatase TERM 332 425290 - 425322 + g 70 -10.4 -3.62597 | GTTCAGCGTCACGTC GCGCAGCAGCAGCG CCGAT CGCGGCTGCCCCGC TTCTTGCGCGATCAG TERM 333 425507 - 425481 - G 71 -9.4 -3.89346 | GGTCGATTGGATAAA TGGTTTGGGCCG AAG CGGCCGAAACGA ACATCAGCGACGCAA TERM 334 425787 - 425736 - R 86 -13.1 -3.99985 | opp_overlap 425737 GAGACAGCCAAACAA TCTCGG-GATTCCGGGTTCGCTCAC TGCC GTGAGCGC-CCCGGAATGACCGTGA AGGCCCTCAGCCCTT Rpal_0397 427131 - 425794 - | Argininosuccinate synthase Rpal_0398 428011 - 427232 - | phosphoesterase PA-phosphatase related Rpal_0399 428508 - 428008 - | hypothetical protein Rpal_0400 429101 - 428508 - | metal dependent phosphohydrolase Rpal_0401 430305 - 429106 - | radical SAM enzyme, Cfr family TERM 335 430392 - 430421 + r 75 -14.9 -2.69151 | opp_overlap 430392, overlap 430389 CCATGCATATAAGAA CCCGCCGCCCGGT TGTC GCCGGCTGGCGGG TCGTCTGTGCCGGAA TERM 336 430421 - 430392 - R 81 -12 -3.8969 | opp_overlap 430392 430389 CCATGCATATAAGAA CCCGCCGCCCGG TTGTCG CCGGCTGGCGGG TCGTCTGTGCCGGAA Rpal_0402 431067 - 430492 - | hypothetical protein TERM 337 430602 - 430648 + g 70 -9.9 -3.72324 | CCTTGACGGTGATTT CGGCGCCGCGGCGCATCGCCT CGACC AGGCGTTCTTCCTCGGCGGCG TTCTTGATCCAGATG Rpal_0403 432057 - 431221 - | short-chain dehydrogenase/reductase SDR Rpal_0404 432289 - 433263 + | Alcohol dehydrogenase zinc-binding domain protein TERM 338 433313 - 433267 - T 74 -12.5 -3.30124 | opp_overlap 433246, overlap 433268 CTGCATCCGTGAGAA TGCTGAATCGCTGGGTTA-GCGC GCA GCGCGTAACCCACCGATTCA-CG TCGCCGCGCGAAGAT TERM 339 433312 - 433268 - T 80 -16 -2.57931 | opp_overlap 433246, overlap 433267 TGCATCCGTGAGAAT GCTGAATCGCTGGGTTA-GCGC GCA GCGCGTAACCCACCGATTCA-C GTCGCCGCGCGAAGA TERM 340 433328 - 433362 + T 85 -15.1 -3.48395 | gap 1, opp_overlap 433328, overlap 433329 GTCGCCGCGCGAAGA TGGTGGGTTACGGCGC AAGA GCGCC-TAACCCACCC TTGTATCAGCGAGCT TERM 341 433362 - 433328 - T 81 -15.1 -3.01712 | gap 1, opp_overlap 433328 433329 GTCGCCGCGCGAAGA TGGTGGGTTACGGCGC AAGA GCGCC-TAACCCACCC TTGTATCAGCGAGCT TERM 342 433329 - 433361 + T 87 -18.6 -2.68823 | gap 1, opp_overlap 433328, overlap 433328 TCGCCGCGCGAAGAT GGTGGGTTACGGCGC AAGA GCGCC-TAACCCACC CTTGTATCAGCGAGC Rpal_0405 435527 - 433392 - | amine oxidase TERM 343 435573 - 435558 - H 74 -4.6 -4.57073 | opp_overlap 435548 CAGGTCCGCTAAAAA CCGGCT TTGA AGTCGG TCCAGCTTGCGGTAC Rpal_0406 435666 - 436286 + | transcriptional regulator, TetR family Rpal_0407 436678 - 436304 - | protein of unknown function DUF1232 Rpal_0408 437063 - 436761 - | transcriptional coactivator/pterin dehydratase Rpal_0409 437263 - 438651 + | TRAP transporter solute receptor, TAXI family Rpal_0410 440100 - 438655 - | PepSY-associated TM helix domain protein Rpal_0411 442381 - 440105 - | TonB-dependent siderophore receptor TERM 344 442946 - 442974 + H 84 -4.5 -5.12707 | gap 1, overlap 442945 442942 442949 442950 CGTCGCAACGCGTGC TGGTGCCCGGTC CTATTC GGCCGGGC-CTG TTTTTTGCGATTTCA TERM 345 442949 - 442972 + H 72 -7.3 -4.18259 | overlap 442945 442942 442946 442950 CGCAACGCGTGCTGG TGCCCGGTC CTATTC GGCCGGGCC TGTTTTTTGCGATTT Rpal_0412 443110 - 444933 + | GTP-binding protein TypA TERM 346 444959 - 444986 + F 86 -18.5 -2.62184 | GATACTCTGACTTTC CGATGCCCGGC CTTCGT GCCGGGCATCG TCGTCTCAAGGCCCC TERM 347 446129 - 446185 + G 77 -13.1 -3.61398 | gap 4, overlap 446132 446133 GCCTATTCGCATGCG CTGCCCGGCCAT-G-CCGGTGCC-CGAGC CGT GCTGGCGGCGCCGGTCGATGGCCGG-CTG TTCTTCGCCGGAGAG TERM 348 446132 - 446183 + G 80 -14.5 -3.38812 | gap 3, overlap 446129 446133 TATTCGCATGCGCTG CCCGGCCAT-G-CCGGTGCC-CGAGC CGT GCTGGCGGCGCCGGTCGATGGCCGGC TGTTCTTCGCCGGAG TERM 349 446133 - 446182 + G 85 -18 -2.63073 | gap 3, overlap 446132 446129 ATTCGCATGCGCTGC CCGGCCAT-G-CCGGTGCC-CGAGC CGT GCTGGCGGCGCCGGTCGATGGCCGG CTGTTCTTCGCCGGA Rpal_0413 445043 - 446311 + | amine oxidase TERM 350 446448 - 446419 - f 71 -5.9 -4.36914 | gap 1 GTCTGGTGCAGAAAA TCCACACGTTAACC GAT AATTAACGT-TGGA GCTTGAAGCCGGCCC Rpal_0414 446487 - 446996 + | GCN5-related N-acetyltransferase Rpal_0415 447073 - 447609 + | Inorganic diphosphatase Rpal_0416 447645 - 449126 + | peptidase M20 Rpal_0417 450202 - 449315 - | Methenyltetrahydrofolate cyclohydrolase TERM 351 450273 - 450252 - R 81 -13.7 -3.61609 | GCATCGAAATGACAA CGCCTCCCC GGAC GGAGAGGCG AACGGTGGATCGCCC TERM 352 450310 - 450359 + r 89 -13.1 -4.18494 | gap 4, overlap 450312 GCCTCCCGGGTTGTT CA-TTCGGCG-GGC-TTG-GCCGCC ACCA GGCGGCGCAACGCCTCGCCGAGCTG TTTTGGATCGCCGTC TERM 353 450312 - 450356 + r 78 -15.9 -2.81208 | gap 3, overlap 450310 CTCCCGGGTTGTTCA TTCGGCG-GGC-TTG-GCCGCC ACCA GGCGGCGCAACGCCTCGCCGAG CTGTTTTGGATCGCC Rpal_0418 450635 - 450309 - | protein of unknown function DUF167 TERM 354 450363 - 450386 + g 70 -2.4 -4.57837 | overlap 450362 450365 CTCGCCGAGCTGTTT TGGATCGC CGTCGATC GCGATCTG TTTTTGCCGCGATGT Rpal_0419 450951 - 450661 - | protein of unknown function YGGT TERM 355 451056 - 451045 - R 72 -7.2 -4.15044 | CTCGGCGGCAATAAA GCCG CGGC CGGC CGATTTCGATCCGCC TERM 356 451157 - 451109 - R 77 -12.9 -3.60296 | GACCTGCACTGTAAA TGGCGGCGTTCGCTGGCGGTACG ACA CGTGCCGCCTGCGCAAGGGGCCA TAGCTCAGCTGGGAG TERM 357 451354 - 451398 + r 78 -14.2 -3.01712 | gap 2, opp_overlap 451330 TGCTTGTCCGAGCGA GATCGC-CGGCCGCC-AGTCGC CGC GCGCCTTGGCGGCCGAGCGCCC TGTTCGAGACGCCCG Rpal_0420 452241 - 451429 - | Enoyl-CoA hydratase/isomerase Rpal_0421 452823 - 452323 - | protein of unknown function DUF1486 Rpal_0422 453724 - 452927 - | glutamine amidotransferase class-I Rpal_0423 454624 - 453845 - | short-chain dehydrogenase/reductase SDR Rpal_0424 455334 - 454807 - | protein of unknown function DUF1332 TERM 358 455101 - 455079 - G 78 -9.8 -4.13654 | TCGTGAAATGATAAA GGTCAACGGC CTC GCCTTCGACC AGTGTCGCCGAGGCG Rpal_0425 456856 - 455471 - | cytochrome P450 TERM 359 456120 - 456168 + g 71 -15.2 -2.52896 | opp_overlap 456118 ATCAGTTCGAACAGG TCGC-GCGGCGGGGCGCCTTCGGC CTT GCCGGCCGCGCGCCGC-GCAGCGA TCAGTTCGCCGATGA Rpal_0426 457978 - 456977 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 360 457184 - 457201 + g 73 -14.1 -3.08173 | overlap 457169 GACGTCGAGGCCGGC GCCGGCG ATGT CGCCGGC TTCGATCAGCTTGGT Rpal_0427 458213 - 458737 + | protein of unknown function DUF1058 TERM 361 458808 - 458784 - T 100 -15.7 -5.00884 | AGGGCGCGCAAAAAA GCCCGAGGGCA TGC TGCGCTCGGGC CATAACCATCACCAA Rpal_0428 459294 - 458845 - | ferric uptake regulator, Fur family Rpal_0429 459595 - 460122 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA Rpal_0430 460184 - 461410 + | Beta-ketoacyl synthase TERM 362 462249 - 462221 - g 70 -5.9 -4.18018 | gap 1, overlap 462224 CGGCTTCATGGAAAA GCA-CTCGCCGC TCGGCC GCGGCGTGACGC TGGAAGAACTCGGCG Rpal_0431 461586 - 462395 + | short-chain dehydrogenase/reductase SDR Rpal_0432 463097 - 462579 - | hypothetical protein TERM 363 463276 - 463295 + r 74 -10.6 -3.80573 | opp_overlap 463276 CGCGGAAACGCAAAA GGGCGACC CGAA GGCCGCCC TTTCCTACTCATAGC TERM 364 463295 - 463276 - R 95 -12.8 -4.35524 | opp_overlap 463276 CGCGGAAACGCAAAA GGGCGACC CGAA GGCCGCCC TTTCCTACTCATAGC Rpal_0433 465535 - 463325 - | catalase/peroxidase HPI TERM 365 465664 - 465635 - H 91 -17.9 -3.19192 | opp_overlap 465635 CGGGATCGAATTGAA CGTCGCGGGCG TGGGGGAT CGCCCGCGACG TTGCTTCCTGGGGTG TERM 366 465635 - 465664 + H 95 -17.9 -3.40371 | opp_overlap 465635 CGGGATCGAATTGAA CGTCGCGGGCG TGGGGGAT CGCCCGCGACG TTGCTTCCTGGGGTG TERM 367 466357 - 466340 - g 74 -12.7 -3.53091 | ATCCGCGCGCCGAAA CGACGCC GATC GGCGTCG AGGAGATCGACCAGT Rpal_0434 465805 - 466743 + | transcriptional regulator, LysR family Rpal_0435 468437 - 466755 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 368 467049 - 467022 - G 87 -14.8 -3.86202 | gap 1, opp_overlap 467034 467035, overlap 467017 CGCCACCACAGCAAA GCCGCGC-CCGGC CTC GCCGGCGCGCGCC GACTCGATCGTGGCG TERM 369 467108 - 467148 + g 72 -14.8 -2.73364 | overlap 467117 TGATGTGGTTGATCA GTTCGACGATGCCGCTCA TTGCT TGAGCCGCGTCGTTGAGC TGATTGGCCTGAGAG TERM 370 468683 - 468662 - R 100 -15.1 -5.27335 | opp_overlap 468662 CGCCGCAAAGAAAAA GGGCGGCCC GGTG AGGCCGCCC TTGATCGATGATGAC TERM 371 468662 - 468683 + r 80 -14.4 -3.19463 | opp_overlap 468662 CGCCGCAAAGAAAAA GGGCGGCC CGGTGA GGCCGCCC TTGATCGATGATGAC Rpal_0436 470895 - 468727 - | Polyribonucleotide nucleotidyltransferase TERM 372 470144 - 470162 + g 76 -8.8 -4.22524 | GCGGCACGCAGCTCC TGCTCGAC CAG GCCGAGCA TTTCCTTTTCGATCT TERM 373 470686 - 470698 + g 82 -6.2 -4.73613 | opp_overlap 470668 470666 GCCGGGAATGCGGCC GGCC GCGTA GGCC TTTTCTTGGTAGTCG TERM 374 471185 - 471243 + r 77 -15.4 -2.60904 | gap 4, overlap 471223 ACATCTTGCTTCGGC C-GTCGCGGAGGCGTCGTGGCG--CGTCCG CTT CGGCCGGTCGTC-CGACGCCTCAGCGACGG ATGTTGTGCTTCTCG TERM 375 471223 - 471246 + r 70 -10.2 -3.56325 | overlap 471185 TCCGCTTCGGCCGGT CGTCCGACGC CTCA GCGACGGATG TTGTGCTTCTCGAGC Rpal_0437 471503 - 471234 - | ribosomal protein S15 Rpal_0438 472606 - 471506 - | tRNA pseudouridine synthase B TERM 376 471702 - 471676 - G 100 -11.4 -4.63218 | GTCCGCGCAACAAAA CGGCCTGGCCCC GAT GGAGCCTTGCCG CATCAGCCCGAGTGA TERM 377 471763 - 471796 + g 76 -15.4 -2.87132 | gap 2 TCTCAACGGGCAGTA GC-GCGT-CGGCGAGG CTAC CCTCGCCGGACGCCGC TCTATCGCACAAAGC Rpal_0439 473019 - 472606 - | ribosome-binding factor A Rpal_0440 475844 - 473193 - | translation initiation factor IF-2 TERM 378 473589 - 473607 + g 72 -11.6 -3.61398 | GATGCCGTTGCGCTT GGCGGCCG CAG CGGCCTCC TTGTTGGCACGGACC TERM 379 475668 - 475706 + g 76 -6.6 -4.56597 | gap 2 TTCAGGCGCCGCCGG CGCGGCCGGCTCGTCGCC ACCAA GGCGCCG--CTTGCCGCG TTTTTCGACCACCAC Rpal_0441 476616 - 475837 - | protein of unknown function DUF448 TERM 380 476690 - 476713 + r 79 -11 -3.9461 | gap 1, overlap 476660 GGTTCAGTCCGCCGA CTCGTCGGACG CTT CGTCCG-CGGG TTCTTCTTCGGAGGC Rpal_0442 478291 - 476678 - | NusA antitermination factor TERM 381 476987 - 477019 + g 70 -13.4 -3.06796 | opp_overlap 476979, overlap 477007 CAGAGCATCTTCGAC GCCGAGCTCCAGGC GCCGG GCCTCGAGCTCGGA TTCAATCCGGTCGAG TERM 382 478195 - 478227 + g 77 -7.8 -4.36914 | opp_overlap 478210, overlap 478194 TGGCGATCGCATCTT CCATCG-CCGCAATCA CGA TGCT-GCGGTCGATGG TTTTCTCGCGAGCCA Rpal_0443 479073 - 478294 - | protein of unknown function DUF150 TERM 383 479210 - 479187 - H 100 -11 -5.4833 | gap 1, opp_overlap 479208 479209 CCAGGTAATAAAAAA GAGCGGGTCCC GGA GGG-CCCACTC TCGATACGGATCGTA TERM 384 479242 - 479256 + H 84 -4.2 -5.14563 | opp_overlap 479242 GAGAATTTCGAAGTA GCGC CGATATA GCGC TTTTTTCCTCCAGCG TERM 385 479467 - 479493 + G 83 -15.8 -3.57119 | GGCAGGGCGATCCCG TCCGGCGCGCCG ACG CCGTGCGCCGGA TTTCCGACCTGTATA Rpal_0444 479406 - 480491 + | hypothetical protein Rpal_0445 480615 - 481463 + | Phytanoyl-CoA dioxygenase Rpal_0446 482273 - 481476 - | tRNA (guanine-N(7)-)-methyltransferase TERM 386 482327 - 482297 - R 100 -9 -4.86621 | gap 1 ACCGTGAACGAAAAA CCGGCC-CCGC TTATATCATG GCGGAGGCCGG CGCGACGGGAGGTCG Rpal_0447 482767 - 482348 - | transcriptional regulator, XRE family Rpal_0448 484578 - 482968 - | apolipoprotein N-acyltransferase TERM 387 483191 - 483162 - G 73 -9.3 -3.90318 | gap 1, overlap 483163 483186 CGATCACTGCAGAAA CGCCGGT-GTTCGC TGC GCGAACGAGCGGCA GGCCCTGCTCGATGG Rpal_0449 485720 - 484575 - | CBS domain containing protein Rpal_0450 486225 - 485722 - | protein of unknown function UPF0054 TERM 388 486089 - 486125 + g 80 -13.7 -3.64703 | gap 1, opp_overlap 486037, overlap 486090 ATCACGGCCAGCTCA GCGCCGCCGGTGTCGG CGTCGA CCG-CATCGGCGGCGG TTTCGATCGCGCGCA TERM 389 486090 - 486124 + g 80 -17.2 -2.78679 | gap 1, opp_overlap 486037, overlap 486089 TCACGGCCAGCTCAG CGCCGCCGGTGTCGG CGTCGA CCG-CATCGGCGGCG GTTTCGATCGCGCGC Rpal_0451 487349 - 486294 - | PhoH family protein TERM 390 486767 - 486744 - G 79 -6.7 -4.58395 | gap 1, overlap 486709 GTCACCGGGCAAAAA GCCG-AGCCG TTCGC CGGCTTCGAC CGCGGGCCGCGACAG Rpal_0452 488747 - 487356 - | RNA modification enzyme, MiaB family TERM 391 488790 - 488773 - R 100 -7.7 -5.64421 | gap 1 AGCCCAAACAAAAAA CGCGCGTG TTC CA-GCGCG TTACCGTCACTTATA Rpal_0453 489526 - 488867 - | HAD-superfamily hydrolase, subfamily IA, variant 3 TERM 392 489588 - 489551 - R 81 -14.1 -3.59979 | opp_overlap 489581, overlap 489555 489557 CGGCTGCAGTTTAAA CTAATACGCCGCGAGCC GGTG AGCTCGCGGCGGATCGG CAGATGCGTCAGTTC TERM 393 489584 - 489555 - R 85 -15.7 -3.53031 | opp_overlap 489581, overlap 489551 489557 TGCAGTTTAAACTAA TACGCCGCGAGCC GGTG AGCTCGCGGCGGA TCGGCAGATGCGTCA TERM 394 489582 - 489557 - R 93 -18.3 -3.33865 | opp_overlap 489581, overlap 489555 489551 CAGTTTAAACTAATA CGCCGCGAGCC GGTG AGCTCGCGGCG GATCGGCAGATGCGT Rpal_0454 490045 - 489614 - | ferric uptake regulator, Fur family Rpal_0455 490593 - 490108 - | ribosomal-protein-alanine acetyltransferase TERM 395 490216 - 490231 + g 72 -5.4 -4.43307 | gap 1, overlap 490218 GGTACGATTGTAGAG TC-GCCG TGC CGGCTGA TTGTTTTCTTCCACC TERM 396 490509 - 490541 + g 70 -10.6 -3.53563 | opp_overlap 490506 490492 AAGCAGCATGAAGCT CGGCGA-GCTTCGGCG CGT CGC-GCAGCGTCGCCG TTTCGACCACGGTGT Rpal_0456 491311 - 490616 - | peptidase M22 glycoprotease TERM 397 491384 - 491409 + r 83 -11.9 -4.02022 | gap 1, overlap 491385 AACTATTCGGATGGG C-GGCATGGCGC GGA GCGTCATGCCTG TTTGTCGTGCTTGCC TERM 398 491385 - 491407 + r 86 -15.6 -3.59935 | overlap 491384 ACTATTCGGATGGGC GGCATGGCGC GGA GCGTCATGCC TGTTTGTCGTGCTTG Rpal_0457 492013 - 491447 - | Scaffold protein Nfu/NifU Rpal_0458 492653 - 492159 - | UspA Rpal_0459 493950 - 492898 - | tryptophanyl-tRNA synthetase TERM 399 493183 - 493201 + g 100 -16 -4.67982 | overlap 493177 CAGGTTATCCGCCTC GGGCCTCG TCT CGAGGCCC TTTTCTTCGCTCGGC Rpal_0460 495562 - 494006 - | integral membrane protein MviN TERM 400 494806 - 494776 - G 78 -14.6 -3.24232 | overlap 494774 494772 GGTTTGCGAAATACA GCCACGACACGGCC GCC GGCTGTGCCGAGGC GATGATGGCGCCGGC TERM 401 495325 - 495344 + g 75 -11.4 -3.65991 | gap 1 GCCGCCCGGCGAACG CGGCCGCCG CCA CGG-GGCCG TTGTGTTCGCGCACT TERM 402 495850 - 495867 + H 78 -6.9 -4.64613 | overlap 495851 CGATGCACCGGCCCG ACCCGCA CGAT TGCGGGA TTTTCCTTGTTTCTC TERM 403 496840 - 496796 - g 72 -7.1 -4.25104 | overlap 496797 CCTCGGCTACGAAAA CGCCGG-CCGCCTCGGCGCGC TGGCT GCG-GCCGAAGTGATCCAGCA CATCGGTGCCCGCCC Rpal_0461 495903 - 496904 + | PfkB domain protein Rpal_0462 498821 - 497127 - | AMP-dependent synthetase and ligase TERM 404 497515 - 497557 + g 73 -6.3 -4.3898 | overlap 497516 TCGATGGTGGCGAGA TCGCCGGTGTGCATCCA-GCC GGC GGCATCGA-GTACGTCGGCGG TTTTCTCCGCCTCGT TERM 405 498948 - 498902 - R 83 -15.8 -3.14132 | gap 1, overlap 498907 CGCCTCTTTCACGAA GCATAGCGCCGCCGGCGGGGC ATTGCG ACCCCGCCGACGGCGCGA-GA ACTCAGGCTGCCTGC TERM 406 498944 - 498907 - R 100 -25.6 -2.93723 | overlap 498902 CTTTCACGAAGCATA GCGCCGCCGGCGGGGC ATTGCG ACCCCGCCGACGGCGC GAGAACTCAGGCTGC Rpal_0463 500138 - 498951 - | beta-lactamase TERM 407 499008 - 498989 - G 71 -9.2 -3.88787 | CGAGAGCGGCATAAA CGCCGCGC TCGA ACGCAGCG AACGCCTCCAAGCAC Rpal_0464 500379 - 500705 + | hypothetical protein TERM 408 501233 - 501259 + G 74 -5.8 -4.56597 | overlap 501227 501234 GAGGCGCTTGGCGAA GTCGATATCGGC GCC GCCTATGTCGAG TTTTTCGCCGAAGAA Rpal_0465 500867 - 502360 + | succinic semialdehyde dehydrogenase TERM 409 502380 - 502401 + T 73 -12.9 -3.21218 | opp_overlap 502380 AGCCTTGTCGATGAA CGGCGCGCC GGGT GACGCGCCG TTCGTCGTGGGGACT TERM 410 502401 - 502380 - T 83 -15.1 -3.14211 | opp_overlap 502380 AGCCTTGTCGATGAA CGGCGCGCC GGGT GACGCGCCG TTCGTCGTGGGGACT Rpal_0466 503851 - 502415 - | protein of unknown function DUF1254 TERM 411 503745 - 503724 - G 72 -5.1 -4.43283 | opp_overlap 503738, overlap 503727 GGATAGAAATACAAA TAAGCGTCG ACCC CGAGGCTCA GCGCCTCTTCGTCGG TERM 412 503749 - 503727 - G 72 -5.4 -4.30253 | opp_overlap 503738, overlap 503724 TAGAAATACAAATAA GCGTCGACCC CGA GGCTCAGCGC CTCTTCGTCGGAGAC Rpal_0467 504674 - 503991 - | hypothetical protein Rpal_0468 505663 - 504677 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpal_0469 506487 - 505663 - | binding-protein-dependent transport systems inner membrane component Rpal_0470 507314 - 506484 - | ABC transporter related Rpal_0471 508465 - 507323 - | NMT1/THI5 like domain protein Rpal_0472 508595 - 509407 + | Creatininase Rpal_0473 509782 - 511851 + | Carbohydrate-selective porin OprB Rpal_0474 513513 - 511882 - | ferredoxin-dependent glutamate synthase Rpal_0475 513809 - 514759 + | hypothetical protein TERM 413 514770 - 514782 + F 76 -9.1 -4.05788 | opp_overlap 514764, overlap 514759 CTTAAGGCACAGCCT TCGGC GGT GCCGA TTTCCTTTCGCCGCG TERM 414 516168 - 516212 + F 76 -8.6 -4.11692 | overlap 516160 TGCTTAGGCGGCCCC CGCTA-GGTTCGCGCCCGGCTG TGT TAGTCGGGCGT-ACCCATGGCG TTTTCGAGGTCGATA TERM 415 516554 - 516572 + G 73 -13.2 -3.28924 | opp_overlap 516542 CAAGGCGTCGGACGT CGTCACCT CTC AGGTGACG TTCTCGGCCCAGATC TERM 416 516703 - 516735 + G 74 -12.7 -3.56092 | TGCTCGACAATTCGC CGTCGATGGGTGTGG GCG CTACGCCCACCGATG TTTCCGCGATGATCG Rpal_0477 516207 - 517538 + | hypothetical protein Rpal_0478 517672 - 518232 + | protein of unknown function DUF937 Rpal_0479 518290 - 518586 + | transglycosylase-associated protein TERM 417 518588 - 518622 + T 75 -14.9 -2.72991 | gap 1 ATGATCCGCGCTGAG GCTGC-CGCGGCCCGG TTCG CCGGGCCGCTCGCTGC TGCTTGCGGATGTGA Rpal_0480 519422 - 518640 - | short-chain dehydrogenase/reductase SDR TERM 418 520469 - 520431 - g 71 -14.4 -2.87211 | opp_overlap 520456 520458 AGCTCGCCGGAGAGA CCTCAGCCGCGCTGGCCG CTG CGACCTCCGCGGCCGACG CGATCAGCAGTGCTG Rpal_0481 519683 - 520747 + | acyl-CoA dehydrogenase domain protein TERM 419 521025 - 520978 - g 72 -8.3 -4.15222 | gap 1, overlap 520980 ACCTGGCCGAAGAAA TACGGCGGCCACG-AGCGCACC TTCCT GGAGCGCTACGTCGTCACCGAA GAGATGCGCATCGCC TERM 420 521023 - 520980 - g 73 -10.9 -3.6761 | gap 1, overlap 520978 CTGGCCGAAGAAATA CGGCGGCCACG-AGCGCACC TTCCT GGAGCGCTACGTCGTCACCG AAGAGATGCGCATCG TERM 421 521348 - 521337 - g 70 -3.6 -4.45544 | overlap 521338 521339 GCCCACCAAGGAAAA CCGC CGCC ACGG CCTCACCCAGTTCCT Rpal_0482 520774 - 521934 + | acyl-CoA dehydrogenase domain protein TERM 422 522044 - 522026 - g 73 -11 -3.68351 | opp_overlap 522025 522026 TCGCCACCATCGAAA TCCAGCGG CCG CCGCTGAA CTTCTTCGACATCTC TERM 423 522324 - 522285 - g 70 -10.6 -3.61398 | CTTCCGCGCCAAGAA GCCGATCATCGCGGCG GTGCACGG CGCCGCGATCGGCGGC GGACTGGGCCTCGCG Rpal_0483 521968 - 522774 + | Enoyl-CoA hydratase/isomerase TERM 424 522908 - 522875 - T 74 -13.9 -2.89564 | gap 1, opp_overlap 522866 GCTGGACGTCAGAGA TTCCGGGTTCGCTCGC TAT GCGAGCGC-CCCAGAA TGACGCGTGGTTAGG Rpal_0484 523683 - 522919 - | hypothetical protein Rpal_0485 524471 - 523686 - | Enoyl-CoA hydratase/isomerase TERM 425 524586 - 524609 + r 71 -13.2 -3.10012 | opp_overlap 524586 GCGAAGGCGAAGCAA TCCAGCTTGG TGCA CCGAGCTGGA TTGCCTCGTCGGCTT Rpal_0486 525853 - 524648 - | substrate-binding protein TERM 426 525916 - 525947 + H 100 -21 -4.14739 | overlap 525907 ATTGGCGCGATCATG CCGCATCGCTTGCT GCGC GGCAAGCGATGCGG TTTTCCGGTGAATGG TERM 427 526046 - 526075 + H 74 -14.3 -2.58663 | gap 1, overlap 526045 TCGCGATCATTGCTG CCCGGCGCGATGCG CGC CGCATCG-GCCGCG ATTCTAAACATCGGT TERM 428 526714 - 526698 - g 100 -7.9 -5.26316 | opp_overlap 526697 GGATGTCATAAAAAA CGCCGCA AAT TCCGGCG ATATGGTGACCCGGA Rpal_0487 526207 - 526995 + | nuclease (SNase domain protein) TERM 429 527841 - 527813 - g 74 -10.1 -3.8062 | overlap 527827 CAACGCCCAGAACAA CGCCCGGCAGTAC ACC GCTCCGCAGGGCG GCTGGCGCGGCGAAC Rpal_0488 527007 - 528524 + | peptidase M48 Ste24p TERM 430 528580 - 528600 + T 95 -19.7 -3.37493 | opp_overlap 528580 CGCGCCCACGAAAAA GGCCCGGCG AAT CGCCGGGCC TTGATGTCTTCGAAC TERM 431 528600 - 528580 - T 100 -19.7 -4.72272 | opp_overlap 528580 CGCGCCCACGAAAAA GGCCCGGCG AAT CGCCGGGCC TTGATGTCTTCGAAC Rpal_0489 529465 - 528629 - | transcriptional regulator, CarD family Rpal_0490 530326 - 529988 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpal_0491 530670 - 530401 - | RNA-binding S4 domain protein Rpal_0492 533982 - 530701 - | helicase domain protein TERM 432 530989 - 531008 + g 76 -15 -3.14878 | opp_overlap 530975 530974, overlap 530988 CTCGCCCTTGCCGCG GCGACCGC CACC GCGGTCGC TCTTGGCTTCGGCGC TERM 433 534277 - 534253 - R 73 -12.7 -3.13432 | opp_overlap 534272 GTCAACATGATTCAA GGCCGCCGGCC GCC GGCCGGCGGAG CGCGGCGCCACGCGT Rpal_0493 535164 - 534292 - | hypothetical protein Rpal_0494 535465 - 535770 + | ribosomal protein L28 TERM 434 535808 - 535831 + F 100 -19.6 -4.4767 | overlap 535803 TGATTGAGATTTCGG CGGCCGGGTC GTTC GACCCGGCCG TTTTGTCGTGCGTGC Rpal_0495 536095 - 539325 + | multi-sensor hybrid histidine kinase Rpal_0496 540497 - 539349 - | hypothetical protein Rpal_0497 542426 - 540522 - | cobalt chelatase, pCobT subunit TERM 435 540825 - 540852 + g 73 -13.5 -3.29144 | gap 1 CATCATCAGGATCTT GCG-CTGCTCGG GGCGG CCGAGCAGACGC TTATGCGCCCAGTCG Rpal_0498 542833 - 542423 - | GCN5-related N-acetyltransferase Rpal_0499 543833 - 542838 - | cobalt chelatase, pCobS small subunit Rpal_0500 544113 - 544730 + | SNARE associated Golgi protein Rpal_0501 545439 - 544795 - | heat shock protein DnaJ domain protein Rpal_0502 545560 - 545829 + | BolA family protein Rpal_0503 547208 - 545847 - | protein of unknown function DUF21 TERM 436 546172 - 546193 + g 70 -10.1 -3.73402 | ACCACCACGTCGTGC TCGTCGGAG ATGT CGCCGACGA TTTCCTCGAGGATGT TERM 437 546811 - 546829 + g 78 -10.2 -4.08945 | overlap 546812 TGCGACACCGGCTCC GGCTGGCG GAT CGCCAGCG TTTTCGGCACCTGCT TERM 438 546812 - 546828 + g 72 -13.7 -3.05046 | overlap 546811 GCGACACCGGCTCCG GCTGGCG GAT CGCCAGC GTTTTCGGCACCTGC Rpal_0504 548401 - 547256 - | 3-dehydroquinate synthase Rpal_0505 549014 - 548412 - | Shikimate kinase Rpal_0506 549153 - 549299 + | hypothetical protein TERM 439 549392 - 549337 - g 71 -13.8 -2.90723 | gap 1, opp_overlap 549337 549338 549374 549378 CGACCGCGAACCACA TCCAGG-ACTGCCGCGCTGCCCGAGCC GGA GGCTCAGGCTGCGCCGCTACGCCCGGC TTCCTATTCGGATGC TERM 440 549608 - 549635 + G 70 -6.2 -4.23707 | overlap 549599 549631 TTGCCACCTCCAGCG TGGCGCGGCG GTTGTCGG CGCTGCGGCA TTTGTTCCGGTTTCT TERM 441 549960 - 549943 - g 82 -12.7 -3.89614 | GGCAAGGGCGACAAA GAGCGGC TGGT GCCGCTC AACGCCGGCGCCAAA Rpal_0507 549316 - 550335 + | tyrosine recombinase XerD Rpal_0508 550917 - 550342 - | cytochrome B561 TERM 442 550619 - 550637 + g 70 -10.2 -3.65902 | CCGTAGAGCGCCAGA TGGCCGGC GCG GGCGGCCA TTTCGGTGAGATGGC Rpal_0509 551193 - 552143 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 443 552542 - 552525 - g 73 -4 -4.63218 | TCGTGGTGAAGAAAA GCCCGC TTGTAC GCGCGC TGATGCTGACAGCTG Rpal_0510 552515 - 553951 + | protein of unknown function DUF949 TERM 444 554140 - 554160 + T 81 -14 -3.55973 | opp_overlap 554140, overlap 554136 CTCCAGACAGCAAAA TGCCCGGC GCGAG GCCGGGCA TTGCTTATTCGCTTG TERM 445 554160 - 554140 - T 100 -14 -4.39166 | opp_overlap 554140 554136 CTCCAGACAGCAAAA TGCCCGGC GCGAG GCCGGGCA TTGCTTATTCGCTTG Rpal_0511 557033 - 554193 - | preprotein translocase, SecA subunit Rpal_0512 557376 - 558326 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 446 558354 - 558374 + T 100 -14 -4.93365 | opp_overlap 558354 AGTTGATTGTCGAAA TGGCCGGG CTCGT CCCGGCCA TTTTTCGTTGTCGGC TERM 447 558374 - 558354 - T 81 -14 -3.55563 | opp_overlap 558354 AGTTGATTGTCGAAA TGGCCGGG CTCGT CCCGGCCA TTTTTCGTTGTCGGC Rpal_0513 561142 - 558419 - | DNA mismatch repair protein MutS TERM 448 561280 - 561265 - H 74 -5.4 -4.56597 | gap 1 GCCGCTTCCTAAAAA CCGG-CT TCA AGTCCGG CGTCCCAGCCCGGAT Rpal_0514 561318 - 562526 + | beta-ketoadipyl CoA thiolase Rpal_0515 564268 - 562706 - | drug resistance transporter, EmrB/QacA subfamily Rpal_0516 565441 - 564272 - | secretion protein HlyD family protein Rpal_0517 565919 - 565434 - | transcriptional regulator, MarR family TERM 449 565464 - 565500 + g 76 -2.3 -4.95484 | gap 2, overlap 565487 CTCCCGTCGTTTTTC TTCGCGGTGGCAGTGGT GTTGG ATCGC-GCC-CCGCAAA TTTTCTTTGATGATC Rpal_0518 566109 - 566606 + | ferric uptake regulator, Fur family Rpal_0519 566771 - 567694 + | protein of unknown function DUF6 transmembrane Rpal_0520 567708 - 569003 + | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase TERM 450 569122 - 569153 + T 78 -6.5 -4.58663 | gap 1 GCCGTTCTCTCCACT CGT-CTTGCCCGGG CTTGA CCCGGGCATCCACG TTTTTGAGCGCTCGT Rpal_0521 570898 - 569246 - | Na+/H+ antiporter Rpal_0522 571208 - 572791 + | diguanylate cyclase/phosphodiesterase Rpal_0523 572809 - 573252 + | BLUF domain protein Rpal_0524 573949 - 573263 - | protein of unknown function DUF1345 TERM 451 573364 - 573319 - G 72 -13.9 -3.01791 | overlap 573323 AGGCGGTGTTGAACA CGAACGATACGACGCCGTGCG CGGT CGCAGTGCGGCGGATCGTCCG GTCGGTGATGCCGAC TERM 452 573880 - 573938 + g 77 -16.1 -2.71268 | opp_overlap 573880 GCGGCCGCGAATACA CCAGG-CGAACGATCCGCGGCAGCTTC CGAAAGC GAAGCAGCAGCGGATCGT-CGTCCGGG TGCTCTGTCATGCGC TERM 453 573937 - 573880 - G 90 -18.5 -3.06696 | gap 1, opp_overlap 573880 GCGGCCGCGAATACA CCAGGCGAACGATCCGCGGCAGCTTC CGAAAGC GAAGCAGCAGCGGATCGT-CGTCCGG GTGCTCTGTCATGCG Rpal_0525 574883 - 573957 - | Polyprenyl synthetase Rpal_0526 574985 - 575695 + | monofunctional biosynthetic peptidoglycan transglycosylase Rpal_0527 575857 - 576039 + | ribosomal protein L32 Rpal_0528 576282 - 576905 + | hypothetical protein Rpal_0529 577236 - 576922 - | hypothetical protein TERM 454 577373 - 577383 + H 78 -5.4 -4.70921 | overlap 577363 GTCCCGGAATCCGAA TTGG TTT CCAA TTTCTTTATATTATC Rpal_0530 577475 - 579217 + | diguanylate cyclase/phosphodiesterase TERM 455 579321 - 579295 - T 84 -16 -3.06696 | opp_overlap 579280 CGGTCGTCGAAGACA TCCGGTTCTGAC ATG ATCAGAACCGGA AGATGCCTAAGCAGC Rpal_0531 579938 - 579348 - | polyhydroxyalkonate synthesis repressor, PhaR TERM 456 579711 - 579735 + g 70 -8.6 -3.98627 | gap 1 TTGCCGAAGGAAGGT GGTCG-GCAGA AGGT TCTGCCCGGCC TTGTTCTCTTGCTCG Rpal_0532 580220 - 581398 + | acetyl-CoA acetyltransferase TERM 457 581399 - 581437 + F 76 -15.5 -2.53876 | gap 2, overlap 581388 CTCGCGCGCGATTGA TC-G-CCGTGTGTCGCGAC GAC GTCGCGATACACGGACTGA TCAGTTGCAGTGCAA TERM 458 581468 - 581488 + F 100 -18.3 -4.92777 | opp_overlap 581468 GAACGATTGTTCAAA CGCCCGGCA GAT TGCCGGGCG TTTTTGCTTGATGTT TERM 459 581488 - 581468 - f 100 -18.3 -3.56568 | opp_overlap 581468 GAACGATTGTTCAAA CGCCCGGCA GAT TGCCGGGCG TTTTTGCTTGATGTT Rpal_0533 581581 - 582306 + | acetoacetyl-CoA reductase TERM 460 582632 - 582666 + G 72 -12.9 -3.15379 | gap 2, overlap 582640 582642 CACGCGCTGTATTTT CTGGCGCTCCGGCTGGC CCC GCCGGCCG-AG-GCCGG TCTGTTGAATTATCT Rpal_0534 582383 - 583249 + | protein of unknown function DUF6 transmembrane Rpal_0535 583790 - 583269 - | conserved hypothetical protein; putative signal peptide; putative protease TERM 461 583832 - 583876 + r 74 -5 -4.56597 | gap 2, opp_overlap 583807, overlap 583835 GCGCAGATTGGATCA CGCGCGGATGC--CGGACGC GACCGCG GCGTCCGATGCATCCGGATG TTTTTGGCGAAAACG Rpal_0536 586398 - 583921 - | ATP-dependent helicase HrpB TERM 462 587179 - 587207 + G 85 -15.9 -3.66654 | TCGCGTTCTCGGATG CAGCGCGCGCGCG ACC CGCGCTGGCGCTG TTTGGCCTTGCGGTG Rpal_0537 586572 - 587624 + | acyltransferase 3 Rpal_0538 589302 - 587743 - | succinate CoA transferase TERM 463 589592 - 589604 + r 73 -3.3 -4.8048 | overlap 589593 GCGCCAATAGCTGTT CGACG ATC CGTCA TTTTTCCTGTGAGCC TERM 464 589685 - 589650 - R 86 -16.3 -3.11569 | opp_overlap 589656, overlap 589656 GCACGCATCCAAAAG CGAAAACCTCCGGCA GGGCAT TGCCGGAGGTTTTCT GGAGGTCTCATGAAG TERM 465 589656 - 589679 + r 100 -14.6 -4.39426 | opp_overlap 589656 589650 ATCCAAAAGCGAAAA CCTCCGGCAG GGCA TTGCCGGAGG TTTTCTGGAGGTCTC TERM 466 589679 - 589656 - R 100 -13.9 -4.43272 | opp_overlap 589656, overlap 589650 ATCCAAAAGCGAAAA CCTCCGGCA GGGCAT TGCCGGAGG TTTTCTGGAGGTCTC TERM 467 589753 - 589772 + r 72 -2.2 -4.7497 | overlap 589755 589756 ATCACCCGCTGACCT TGTTCATA AGTA TATGAGTA TTTTTCCTGACTACA TERM 468 590017 - 589996 - R 100 -18.7 -4.8622 | opp_overlap 589996 CTGCGCAACGAAAAA CCCCGGCGG TTGC CCGCCGGGG TTCGTCAGATACTCG TERM 469 589996 - 590017 + r 93 -18.7 -3.17212 | opp_overlap 589996 CTGCGCAACGAAAAA CCCCGGCGG TTGC CCGCCGGGG TTCGTCAGATACTCG Rpal_0539 591503 - 590049 - | porin Rpal_0540 592093 - 592605 + | transcriptional regulator, MarR family Rpal_0541 593718 - 592600 - | hypothetical protein Rpal_0542 594191 - 594739 + | disulphide bond formation protein DsbB Rpal_0543 595794 - 594742 - | membrane protein AbrB duplication Rpal_0544 595989 - 596516 + | conserved hypothetical protein; putative signal peptide Rpal_0545 596670 - 597053 + | LrgA family protein Rpal_0546 597050 - 597772 + | LrgB family protein Rpal_0547 597867 - 598331 + | hypothetical protein Rpal_0548 599411 - 598335 - | phospholipase/Carboxylesterase Rpal_0549 599594 - 600748 + | protein of unknown function UPF0118 Rpal_0550 601407 - 600745 - | anti-ECFsigma factor, ChrR Rpal_0551 601991 - 601404 - | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_0552 602382 - 602483 + | hypothetical protein TERM 470 602520 - 602577 + T 100 -17.2 -4.7078 | gap 3, overlap 602527 CCGATCGAACGCGAG TCCAGC--ATGGTCGTGGGGCCTGCCGGC GAT GCCGGCGGGCCCT-CGACTGTGAGTTGGA TTTTTGCGTGGTTCG TERM 471 602527 - 602568 + T 91 -20.9 -2.61341 | gap 1, overlap 602520 AACGCGAGTCCAGCA TGGTCGTGGGGCCTGCCGGC GAT GCCGGCGGGCCCT-CGACTG TGAGTTGGATTTTTG Rpal_0553 603500 - 602619 - | transcriptional regulator, LysR family Rpal_0554 603606 - 604913 + | sodium:dicarboxylate symporter TERM 472 605007 - 604968 - g 85 -17.8 -2.53213 | opp_overlap 605000, overlap 604971 GAACGCCCCAACCTA CAACCCGGCCTGCGGCGG CCTG CCGCCTCAGACCGCGCTG CACACCGGCCGCGCG TERM 473 605004 - 604971 - g 82 -15.9 -3.41878 | opp_overlap 605000, overlap 604968 CGCCCCAACCTACAA CCCGGCCTGCGGCGG CCTG CCGCCTCAGACCGCG CTGCACACCGGCCGC Rpal_0555 604951 - 605790 + | allantoin catabolism protein TERM 474 605847 - 605809 - g 77 -5.1 -4.57837 | gap 1, overlap 605797 605810 ACACCGCGCGAAAAA TCGTCGCCCA-GCCGCTG AGTG CAGCGGCGTTCGCGCCGT TCGGCCAAGTGATCG Rpal_0556 605787 - 606299 + | Ureidoglycolate hydrolase Rpal_0557 606969 - 606349 - | Methyltransferase type 11 Rpal_0558 607646 - 607089 - | HNH endonuclease TERM 475 607748 - 607762 + H 71 -11.4 -3.53224 | opp_overlap 607743 607742 ATGCAGAAATGTCCC TCCCGC AGG GCGGGA TTTCAGCCCAAGCTG Rpal_0559 607927 - 608925 + | cysteine synthase A Rpal_0560 609914 - 608997 - | Phosphoribosylaminoimidazolesuccinocarboxamide synthase TERM 476 609962 - 609934 - R 73 -11.5 -3.64703 | opp_overlap 609933 609943, overlap 609935 GGTGTTCCAGGCAAA GGCGGCCGCCGGC ACG GCCGGCGGCGGGG ATCGTTGCGGGCCCT TERM 477 609961 - 609935 - R 75 -15 -2.78679 | opp_overlap 609933 609943, overlap 609934 GTGTTCCAGGCAAAG GCGGCCGCCGGC ACG GCCGGCGGCGGG GATCGTTGCGGGCCC Rpal_0561 610902 - 609985 - | Pirin domain protein TERM 478 610584 - 610598 + g 79 -11.4 -3.7948 | overlap 610560 CGGTCATCAGGTTCA TCGCGC CGG GCGCGA TTTCCTGAATGTTGC Rpal_0562 612454 - 611033 - | Malonyl-CoA decarboxylase TERM 479 612125 - 612167 + g 73 -14.1 -3.17075 | opp_overlap 612120 612116 612152 GAGCAATTCACCGGT CGCCTCGGCCGAGGCGT CGGCGCGAA ACGCCTCGATCGCGGCG TTGAGTTCGGCGAGG Rpal_0563 613235 - 612630 - | PAS fold-4 domain protein Rpal_0564 614675 - 613311 - | MmgE/PrpD family protein TERM 480 614914 - 614885 - g 91 -17.1 -3.75153 | gap 1, opp_overlap 614909 CTTTCGCAATGGAAA CCGCGCC-GGCCCC AAT GGGGCCTGGCGCTG CGTATCACTCTCGCG TERM 481 615735 - 615716 - g 70 -10.6 -3.53012 | overlap 615674 TCGGCCTGCGCCAAA GCGCTGCG CGAG CGCCGCGC GCCGCCGCCGCTCGG TERM 482 615839 - 615862 + G 70 -11 -3.59979 | CTCCCAGGCGATCAG GCCGAGCG GTTCTTCG CGCTCGGC TTTGCGATGGAGCAA Rpal_0565 614846 - 615958 + | hypothetical protein Rpal_0566 616424 - 615963 - | hypothetical protein TERM 483 616320 - 616276 - G 70 -8.6 -3.92592 | gap 2, opp_overlap 616283 616305 AGCGTGAAGATGAAA TCCG-ACACCGTGACGC-CGCG CTG CGCGTGCGCGACGATCTTCGGA TCGCGGGTCATGTCG TERM 484 617047 - 617023 - g 100 -9.9 -5.1356 | CCCGACGAAGAAAAA CGACGTGCAGC CCA GCAGCATGTCG AAAGGCAGCGCCAAG Rpal_0567 616799 - 617065 + | hypothetical protein TERM 485 617095 - 617122 + F 93 -14.1 -4.11692 | ATTCGTCCACGATGA TGGCCCGCCGC CCCCAA GCTGCGGGCCA TTTTGCGGGTGGCTG TERM 486 617215 - 617198 - f 71 -9.1 -3.74158 | GCAATTATATGGAAA TCCGGGC AGGG GCCCAGA CCAGGAGCGACCGTG TERM 487 617847 - 617799 - g 82 -12.4 -3.90291 | gap 2, overlap 617800 AGGCGCTGAAGGAAA TGCGCCATGCCACGCCGCGCTCAG GTC CTGAGCTCGGCG-AGC-TGGTGCG TCACGCCACCGCGCA TERM 488 617846 - 617800 - g 76 -15.9 -2.93853 | gap 2, overlap 617799 GGCGCTGAAGGAAAT GCGCCATGCCACGCCGCGCTCAG GTC CTGAGCTCGGCG-AGC-TGGTGC GTCACGCCACCGCGC Rpal_0568 617228 - 618415 + | esterase, PHB depolymerase family Rpal_0569 618543 - 618962 + | protein of unknown function DUF1236 TERM 489 619031 - 618998 - T 100 -22.5 -3.20901 | opp_overlap 618999, overlap 619001 AGCTGATCAATCCAA GGATCGGGCCGCGTC GAGG GACGCGGCCCGATCT TTATTGCTTAGGGTC TERM 490 618999 - 619030 + T 100 -26 -4.32951 | opp_overlap 618998 619001 GCTGATCAATCCAAG GATCGGGCCGCGTC GAGG GACGCGGCCCGATC TTTATTGCTTAGGGT TERM 491 619028 - 619001 - T 100 -22.8 -2.79684 | opp_overlap 618999, overlap 618998 TGATCAATCCAAGGA TCGGGCCGCGTC GAGG GACGCGGCCCGA TCTTTATTGCTTAGG Rpal_0570 620016 - 619039 - | transcriptional regulator, AraC family TERM 492 619146 - 619126 - G 70 -6.1 -4.16943 | CCCGAGATTGGAAAA GCCGCAG GACAGCG CTGCAGC CGTGACCGTGGTGGG Rpal_0571 620942 - 620277 - | beta-lactamase domain protein Rpal_0572 622150 - 621032 - | von Willebrand factor type A Rpal_0573 622327 - 622785 + | protein of unknown function DUF1052 Rpal_0574 623477 - 622923 - | two component transcriptional regulator, Fis family Rpal_0575 624891 - 623569 - | integral membrane sensor signal transduction histidine kinase Rpal_0576 625002 - 625796 + | ABC transporter related Rpal_0577 625793 - 626623 + | ABC-2 type transporter TERM 493 626632 - 626654 + F 75 -13.4 -2.9838 | overlap 626630 626625 CGAGTAGGATGATTC CGGACAGGCC TGT GGACTGTCCG TGCTTACTTTTTACG Rpal_0578 626762 - 628090 + | polyhydroxyalkanoate depolymerase, intracellular TERM 494 628344 - 628354 + F 72 -4 -4.56597 | overlap 628326 628325 GCCCTGTATATTGGG CAAA TGA TTTG TTTTTGCGCCGAGCG Rpal_0579 628431 - 629180 + | protein of unknown function DUF45 Rpal_0580 631672 - 629453 - | penicillin-binding protein, 1A family Rpal_0581 631855 - 632106 + | hypothetical protein Rpal_0582 632414 - 632202 - | hypothetical protein TERM 495 632672 - 632640 - R 100 -17.7 -4.17089 | GTGAAAGCGGCAAAA GTCCGGGTCGCGAGT TCC ATTCGCGGCCCGGAC TGACATAGCGGACAG Rpal_0583 633926 - 632706 - | Extracellular ligand-binding receptor Rpal_0584 634439 - 634077 - | protein of unknown function DUF1304 TERM 496 634243 - 634197 - G 73 -10.9 -3.7282 | gap 2 GCAGCCGAGGAAGAA GGTCGCTAGCTGCAGCGCCACCG CGG CGTTCG-GGTGCAGC-AGCGACC AGATCAGCCCGGCAG Rpal_0585 634522 - 634950 + | hypothetical protein TERM 497 634973 - 635004 + F 78 -11.6 -3.78067 | gap 1, opp_overlap 634970 634973, overlap 634977 634981 GACGTCAGGATAGGA CTGT-GGTAGCGCCG CTT CGGCGCTTCCTATAG TTTGCCTTCCATCTT TERM 498 634977 - 634999 + F 78 -14.8 -3.03781 | opp_overlap 634973 634970, overlap 634973 634981 TCAGGATAGGACTGT GGTAGCGCCG CTT CGGCGCTTCC TATAGTTTGCCTTCC TERM 499 634981 - 634995 + F 74 -12.8 -3.35344 | opp_overlap 634973 634970, overlap 634977 634973 GATAGGACTGTGGTA GCGCCG CTT CGGCGC TTCCTATAGTTTGCC Rpal_0586 635045 - 637786 + | multi-sensor hybrid histidine kinase Rpal_0587 637978 - 640311 + | RNA binding S1 domain protein Rpal_0588 641557 - 640334 - | chromate transporter, chromate ion transporter (CHR) family Rpal_0589 642447 - 641554 - | short-chain dehydrogenase/reductase SDR Rpal_0590 643946 - 642477 - | amino acid permease-associated region Rpal_0591 644667 - 643987 - | transcriptional regulator, TetR family TERM 500 644195 - 644163 - G 75 -9.7 -4.12456 | overlap 644154 ACATCAGGCTGAAAA CCGGCAACGCCGC TTCGGCG GCGGAGCGGCCGG CGGGCCAGTCCGAGG TERM 501 644601 - 644579 - G 77 -5.4 -4.68705 | opp_overlap 644580 644594, overlap 644580 AGAAGCCGAACAAAA GCGTCGCGGA TTG CCCGCGAGGT TTCGTGCGAGCGCGG TERM 502 644620 - 644636 + g 79 -4.4 -4.75404 | gap 1, overlap 644594 644623 GTGCGAGCGCGGCTG CACCGGC CTTC GCCG-TG TTTTTGCTGGGGTTT TERM 503 646201 - 646166 - g 90 -18.3 -3.62096 | opp_overlap 646168 GTCGAGCAGGCCAAA GGCGCCGACGTGGCG TTCGAT CGCCACATCGCCGCC CTGAAGGACGACATG Rpal_0592 644762 - 646429 + | acyl-CoA dehydrogenase domain protein TERM 504 646555 - 646523 - T 100 -15.7 -4.35518 | gap 1, opp_overlap 646523 AAGGTCAGATCAAAA CGTCGATGCCCGGC GCAAAG GCCGGGCATC-ACG TGTATCAGGCGGACC TERM 505 646523 - 646555 + T 79 -15.7 -2.87132 | gap 1, opp_overlap 646523 AAGGTCAGATCAAAA CGTCGATGCCCGGC GCAAAG GCCGGGCATC-ACG TGTATCAGGCGGACC Rpal_0593 647932 - 646592 - | carboxyl-terminal protease TERM 506 646809 - 646841 + g 72 -15 -2.71483 | gap 1, overlap 646816 646821 CCGTGCAGCGCGCTT TC-GCGGATCAGCGG GCCG CCGCTGATCTGCTGA TCCTTCGGCGCCTCT Rpal_0594 650897 - 648096 - | UTP-GlnB uridylyltransferase, GlnD TERM 507 650688 - 650738 + g 72 -11.7 -3.54424 | opp_overlap 650675, overlap 650727 CAGCCGCTCGGCGCA GCGCCG-GCCGTGGCGGTCGCGCAG CAA CTGCGCTTCGGCCTCGGTGCGG-GC TTTGGCCAGCTCCGC TERM 508 650763 - 650804 + g 74 -5.8 -4.56775 | overlap 650766 650772 650787 CTCCGCCTTCATCAG CATCGCCAGCG-CGGTGCGG AACG CCGCGTCGTTGCCGGTG-TG TTTTTCGGCCAGCGT TERM 509 650766 - 650802 + g 70 -8.6 -3.90048 | gap 1, overlap 650763 650772 650787 CGCCTTCATCAGCAT CGCCAGCG-CGGTGCGG AACG CCGCGTCGTTGCCGGTG TGTTTTTCGGCCAGC TERM 510 652310 - 652268 - g 73 -13.3 -3.2794 | gap 1 GGTGATCCAGATCAA GGTC-GCCCTCGGCCTCGGC AAAG GCCGCGACCGCGTGCTGACC TGCGACCTGACCAAG Rpal_0595 651120 - 652361 + | arginine biosynthesis bifunctional protein ArgJ Rpal_0596 652358 - 652855 + | hypothetical protein Rpal_0597 652863 - 653264 + | NUDIX hydrolase Rpal_0598 654561 - 653392 - | Integrase catalytic region Rpal_0599 655531 - 654707 - | Methyltransferase type 11 TERM 511 655471 - 655449 - G 74 -10.4 -3.78775 | overlap 655450 CGGTCGAGCAGGAAA GGCGCCGGGC CGA GCGCGGCGGC GCGGTGCAGCCGTGC Rpal_0600 655857 - 655558 - | hypothetical protein Rpal_0601 655963 - 656778 + | phosphoribosyltransferase Rpal_0602 656821 - 657096 + | glutaredoxin 3 Rpal_0603 657093 - 657968 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 512 658165 - 658133 - g 72 -8.3 -4.15222 | gap 1 ATCGTCGGCAAGAAA GGCCGCGGCCGCGC GCCCGA GC-CGGCTGCCGCC GAACCCGCCGCGACC Rpal_0604 657965 - 658459 + | protein of unknown function DUF1178 Rpal_0605 658681 - 659118 + | protein of unknown function DUF6 transmembrane Rpal_0606 660018 - 659119 - | protein of unknown function DUF6 transmembrane Rpal_0607 660907 - 660146 - | ubiquinone biosynthesis O-methyltransferase TERM 513 660501 - 660522 + g 70 -10.1 -3.73224 | ATCGCCAGCACGATG TCGAACCGC TCAC GCGGGTCGA TTTCCTCGACCATGA Rpal_0608 661101 - 662354 + | aspartate kinase TERM 514 662482 - 662494 + F 81 -6.9 -4.72029 | opp_overlap 662479, overlap 662479 GCGCTGACAGGACGG CTGGC AAG GCCGG TTTTGTTGCGTTGCG TERM 515 663243 - 663269 + G 72 -13 -3.17212 | opp_overlap 663242 CGATCCACAAAACCG GTGCGGTGCTGT CCG ACGGCATCGCGC TTGGTCACGTCGTGC Rpal_0609 662690 - 664957 + | PTSINtr with GAF domain, PtsP TERM 516 664962 - 664980 + F 83 -11.6 -4.0162 | TCGCTTTGTAGCGAC GCGGCTGC CCC GCCGCCGC TTTGTCGTCTCACGC Rpal_0610 665014 - 666099 + | peptide chain release factor 1 TERM 517 666156 - 666189 + G 81 -16.1 -3.13403 | gap 1, overlap 666155 CGGCAATTCCAGGAC GC-GGGCATCGAGTCC GCC GCACTCGATGCCCGGC TGTTGGTCGGCGAGG Rpal_0611 666096 - 666965 + | protein-(glutamine-N5) methyltransferase, release factor-specific TERM 518 667251 - 667278 + F 74 -12 -3.53224 | gap 1, opp_overlap 667251 667247 GGCTCGATGAATTGA TCCGGCCGGCGGT GTA ACGGCCG-CCGGA TTTGGAGAACGCGTC Rpal_0612 667417 - 668112 + | hypothetical protein TERM 519 668154 - 668175 + T 100 -15.1 -4.13654 | opp_overlap 668151 668149 668146 668154 GATCAAATCAGACGA GGCCGCGCC GGTT GGTGCGGCC TTTGTCGTTTCGGCA Rpal_0613 668994 - 668215 - | Methyltransferase type 11 TERM 520 668876 - 668911 + g 72 -13.3 -3.1505 | gap 1 CCGAGCACGCGATCG CCGCGCGCATCCGGCC ATCGC GACTGGATGC-CGCGG TTGATCAGCCGTCGT Rpal_0614 669163 - 669930 + | hydroxyacylglutathione hydrolase Rpal_0615 669963 - 670364 + | protein of unknown function DUF985 TERM 521 670483 - 670429 - T 76 -8.7 -4.18488 | gap 2, opp_overlap 670429 670430 670432, overlap 670430 670432 ACCCACCGCAACAAA CCACCGAG-C-AGCATGATGGGTCAGG GCG CTTAACCCATCATGCGAGTCTGGGTGA TTTACAGCGCGCCGA Rpal_0616 671423 - 670485 - | PfkB domain protein Rpal_0617 672352 - 671420 - | NUDIX hydrolase Rpal_0618 672776 - 672357 - | histidine triad (HIT) protein TERM 522 674515 - 674554 + G 74 -9.8 -3.89346 | gap 1 GTGGTGGCAGCAGCA GTCGCGGCGGTGCGTCCGC TTC GCTGGCGC-CGGCCCCGGC TTTATCCGCTCCCAG Rpal_0619 673248 - 675119 + | DNA polymerase III, subunits gamma and tau Rpal_0620 675141 - 675461 + | hypothetical protein TERM 523 675440 - 675458 + F 74 -13.8 -2.90065 | opp_overlap 675407, overlap 675438 675437 675456 TGGCCTCGGCCTGCC GCCCGGGC TCG GCCTGGGC TAGTCTTTCTGGCCT TERM 524 675785 - 675765 - g 77 -7.5 -4.431 | overlap 675766 CATCGATTCACAAAA CCCGTGCAC GGT GTGCACCGA TCCGCGACGGGATTC TERM 525 676120 - 676152 + G 77 -10.6 -3.78934 | gap 1, opp_overlap 676120 GACTATCTCGACGAA GGTACGCTGTCGGCG GCGA TGC-GACAGCGCACC TTGTTCTGACCCAAC Rpal_0621 675559 - 676161 + | recombination protein RecR Rpal_0622 676181 - 676609 + | hypothetical protein Rpal_0623 678029 - 676650 - | major facilitator superfamily MFS_1 TERM 526 676774 - 676752 - G 70 -10.5 -3.63515 | GCTGATGGTGAAGAA CGCCGGCCA GCCGG TGGCCTGCG CGACGTATCCGGCAC TERM 527 678091 - 678038 - R 83 -15.2 -3.16564 | gap 1, opp_overlap 678084 678085 678086, overlap 678042 TGGTCATGGGATGAA CCTATCCGATTCGGCGACACCGGGC GGACG GCCCGGTGTCGCCGC-CCGAGCGGG CTGCGTCAGCTCCGC TERM 528 678087 - 678042 - R 77 -15.4 -2.56914 | gap 1, opp_overlap 678084 678085 678086, overlap 678038 CATGGGATGAACCTA TCCGATTCGGCGACACCGGGC GGACG GCCCGGTGTCGCCGC-CCGAG CGGGCTGCGTCAGCT Rpal_0624 679299 - 678097 - | protein of unknown function DUF195 Rpal_0625 679449 - 679976 + | peptide deformylase Rpal_0626 680055 - 680987 + | methionyl-tRNA formyltransferase TERM 529 680978 - 681024 + F 75 -13.6 -3.09516 | CGCGAAGGGTGTGCG GGTGGGTTAGGGCTGAGGCGCA GCC TGAGCCTGAGCGCCACCCCACC TTCGGTCGTCACCAC Rpal_0627 681174 - 681911 + | tRNA pseudouridine synthase A TERM 530 681921 - 681966 + T 73 -12.5 -3.224 | gap 1, opp_overlap 681946, overlap 681913 681919 681922 TACTGAGCGGCGCGG CCGTCATTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAATCCCGA TGTTGTCGCGAATTC TERM 531 681922 - 681965 + T 79 -16 -2.53119 | gap 1, opp_overlap 681946, overlap 681913 681921 681919 ACTGAGCGGCGCGGC CGTCATTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAATCCCG ATGTTGTCGCGAATT Rpal_0628 683212 - 682049 - | succinyl-diaminopimelate desuccinylase Rpal_0629 683685 - 683212 - | protein of unknown function DUF805 Rpal_0630 684549 - 683704 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Rpal_0631 685435 - 684734 - | pyrimidine 5'-nucleotidase Rpal_0632 686451 - 685432 - | hypothetical protein Rpal_0633 687449 - 686553 - | acetylglutamate kinase TERM 532 687069 - 687096 + g 73 -13.4 -3.25823 | gap 1, overlap 687071 687093 GCCGTCCTTGCCGCA C-AGGCCGACGGC CTT GCCGCCGGCCTCG TTGATGTAGCCGACG TERM 533 687071 - 687093 + g 79 -16.2 -2.81547 | overlap 687069 CGTCCTTGCCGCACA GGCCGACGGC CTT GCCGCCGGCC TCGTTGATGTAGCCG Rpal_0634 687942 - 687574 - | protein of unknown function DUF423 Rpal_0635 688592 - 687942 - | GTP-binding protein HSR1-related TERM 534 688730 - 688694 - R 100 -17.4 -3.91897 | gap 1, opp_overlap 688686 CCGTGCAGCTAGAAA TTCCAGAGCTGCGCGCC TCAC GGCACGCAGCCC-GGAA TGACGAGGTCGTCTC TERM 535 688738 - 688753 + r 84 -2.4 -5.29445 | GCCCGGAATGACGAG GTCGTC TCAG GTCGGC TTTTTCTTCTTGGCG Rpal_0636 690612 - 688744 - | 60 kDa inner membrane insertion protein TERM 536 690026 - 690049 + g 70 -11.8 -3.39668 | gap 1 TCGACGGTGATCTGG CGGCGGAAGGT GAG ACCTTC-GCCG TTGTCCCATTTCAGC TERM 537 690492 - 690517 + g 76 -8.9 -4.2349 | gap 1, overlap 690468 GCTTGGCGGCCTGCT GCTGCGC-CTGC TGG GCGGCGCGCTGC TTTTCCATCTGCGGG Rpal_0637 690970 - 690629 - | ribonuclease P protein component TERM 538 690816 - 690831 + g 74 -2.5 -4.71426 | CGAATTCGATTGCGT TCGGT CGCGGT GCCGA TTTTCTTGGTCACGG Rpal_0638 691128 - 690994 - | ribosomal protein L34 Rpal_0639 691459 - 692937 + | integral membrane sensor signal transduction histidine kinase TERM 539 693553 - 693571 + T 74 -13.2 -3.3785 | opp_overlap 693536 693539 AGCGCCAGTTTCGAA CTCTGACG CGG CGTCAGAG TTCTGCATCGGTTGC Rpal_0640 694212 - 693685 - | hypothetical protein Rpal_0641 695016 - 694225 - | putative phage repressor TERM 540 695078 - 695061 - H 86 -8.4 -4.56597 | opp_overlap 695052 695071 TGCGGGCCCCAAAAA GTCGGC GCGACA GCCGAC TTCAGGAGGTGGTTG Rpal_0642 695097 - 695396 + | putative transcriptional regulator, Nlp Rpal_0643 695393 - 695665 + | hypothetical protein TERM 541 695665 - 695701 + F 83 -11.6 -4.10453 | gap 1, overlap 695666 TTCCTCCCGTGACTG ACGGCGGATGCCGGG CCTTCCAA CCC-GCATCCGCCGC TTTTCAACCCCTTTC TERM 542 695666 - 695700 + F 81 -15.1 -3.0579 | gap 1, overlap 695665 TCCTCCCGTGACTGA CGGCGGATGCCGGG CCTTCCAA CCC-GCATCCGCCG CTTTTCAACCCCTTT Rpal_0644 695730 - 696545 + | ParB domain protein nuclease Rpal_0645 696550 - 697002 + | hypothetical protein TERM 543 699157 - 699129 - g 100 -15.3 -5.20783 | ATGGAAACAGAAAAA CCCGCCGCGTC CTGGACC GACGCGACGGG TCAGCAATCACTGTG Rpal_0646 696999 - 699173 + | Integrase catalytic region Rpal_0647 699185 - 699955 + | transposase protein B Rpal_0648 699957 - 700598 + | hypothetical protein TERM 544 700804 - 700777 - g 72 -12 -3.61089 | gap 1, overlap 700771 700778 CGCCAACAAGTACAA GGGGCGCCTCGAC ATC GTCGAGGC-CCGC GTCCGCGGCGCCCTG Rpal_0649 700598 - 700984 + | hypothetical protein TERM 545 701302 - 701279 - g 71 -3.1 -4.57837 | gap 1, overlap 701291 701292 ATACGGCCGCAAAAA TGGCCGTCGA AACCA TCGCC-GCCA CGAAGCTGGCCGAGC Rpal_0650 700981 - 701607 + | Chromosomal replication initiator DnaA domain Rpal_0651 701600 - 701845 + | hypothetical protein Rpal_0652 701838 - 702488 + | hypothetical protein Rpal_0653 703103 - 703315 + | hypothetical protein Rpal_0654 703312 - 703539 + | hypothetical protein Rpal_0655 703542 - 703742 + | hypothetical protein Rpal_0656 703739 - 704167 + | response regulator receiver protein Rpal_0657 704164 - 704916 + | hypothetical protein Rpal_0658 704913 - 705521 + | Mu-like prophage protein GP16 TERM 546 705646 - 705626 - g 71 -9.7 -3.86015 | overlap 705628 CAGTTGGCCGAGAAA CACGGCGAA GGC TTCGCCGCA GCGGTGCGCAAAGAG TERM 547 705644 - 705628 - g 74 -12.3 -3.51934 | overlap 705626 GTTGGCCGAGAAACA CGGCGAA GGC TTCGCCG CAGCGGTGCGCAAAG Rpal_0659 705524 - 705700 + | hypothetical protein Rpal_0660 705746 - 705979 + | hypothetical protein Rpal_0661 705976 - 706386 + | hypothetical protein Rpal_0662 706503 - 707897 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD Rpal_0663 707910 - 708122 + | hypothetical protein Rpal_0664 708119 - 708517 + | exonuclease SbcC Rpal_0665 708444 - 708719 + | hypothetical protein TERM 548 708925 - 708900 - g 73 -11.2 -3.73775 | gap 1 TCGATTGTCAGGAAA GTCGCGAGCGG TGGAG CCGCTCGC-AC AGGGGGCGGTAATGG Rpal_0666 708716 - 708937 + | transcriptional regulator, TraR/DksA family TERM 549 709101 - 709077 - g 79 -16.5 -2.8294 | opp_overlap 709073, overlap 709074 709079 GACGTTCGACAACCA GATCGAGGCGG TCA CCACCTCGATC AGCGATCTGTCGAAG TERM 550 709099 - 709079 - g 70 -13.3 -2.96274 | opp_overlap 709073, overlap 709077 709074 CGTTCGACAACCAGA TCGAGGCGG TCA CCACCTCGA TCAGCGATCTGTCGA Rpal_0667 708937 - 709392 + | hypothetical protein Rpal_0668 709389 - 709700 + | hypothetical protein Rpal_0669 709705 - 710283 + | Mu-like prophage FluMu protein GP27 TERM 551 710868 - 710852 - g 77 -13.7 -3.39327 | CGTCGATATCTACAA GGCCGTC GAG GACGGCC TGCCGCGCAACATCG Rpal_0670 710280 - 711605 + | protein of unknown function DUF264 Rpal_0671 711599 - 713191 + | protein of unknown function DUF935 Rpal_0672 713194 - 714375 + | putative head morphogenesis protein SPP1 gp7 TERM 552 714863 - 714850 - g 75 -9.5 -4.15396 | opp_overlap 714856 714857 714861 GCTGAAAGCAAAGAA CGGCG ATCG CGCCG ACGCGGTTGGTTGGA TERM 553 715172 - 715116 - g 77 -10.2 -3.91352 | gap 3 ACATGCCGAACGAAA TCG-CGA-AGGCGCTCGGCCTCG-CGG AAACCG CTGACGAGGCCGCGTGCCTGTCGGCGA TCACTACGCTGACGA Rpal_0673 714647 - 715609 + | putative prophage MuSo2 protein Rpal_0674 715609 - 715998 + | hypothetical protein Rpal_0675 716133 - 717095 + | hypothetical protein Rpal_0676 717108 - 717407 + | translation initiation factor IF-2 Rpal_0677 717511 - 717795 + | hypothetical protein Rpal_0678 717792 - 718019 + | hypothetical protein Rpal_0679 718019 - 718492 + | hypothetical protein Rpal_0680 718492 - 718986 + | phage virion morphogenesis protein TERM 554 719189 - 719232 + G 70 -13.2 -3.02471 | TCGTTGGAAGTTCGA CGGCGATCTCGACGGC TCCTGGAACCTC GACGTCGAGGTCGCCG TGTATGTCATCACGG Rpal_0681 718983 - 719570 + | hypothetical protein Rpal_0682 719567 - 720187 + | hypothetical protein Rpal_0683 720193 - 720474 + | hypothetical protein Rpal_0684 720478 - 720894 + | hypothetical protein Rpal_0685 720891 - 721829 + | Baseplate J family protein Rpal_0686 721826 - 723085 + | phage tail protein I Rpal_0687 723097 - 725418 + | hypothetical protein Rpal_0688 725422 - 725625 + | hypothetical protein Rpal_0689 725647 - 727221 + | hypothetical protein Rpal_0690 727280 - 727924 + | hypothetical protein TERM 555 727932 - 727957 + F 84 -16.9 -2.75064 | overlap 727929 727919 TTGCCTGACGGCCCA GGGTCGCTGAC GCGT GTCAGCGGCCC TACTTACGTCAGCGC TERM 556 728086 - 728097 + G 75 -4.4 -4.58395 | overlap 728079 728076 GGATGCACGCACCGT TCAG GTGC CTGA TTTTTCGACGATCGC TERM 557 728822 - 728836 + G 74 -12.8 -3.62096 | CTCTACGCGATCGAC CCGGCG CTC CGCCGG TTTGCGGTGCTGGAC Rpal_0691 728021 - 729478 + | Phage tail sheath protein FI-like protein Rpal_0692 729491 - 730012 + | hypothetical protein TERM 558 730473 - 730440 - g 72 -13.1 -3.16683 | gap 1, opp_overlap 730431, overlap 730418 730415 AGCCGAGGCGAGCAA GCC-AGCGCTTCCGCC TTT GGTGGCAGCGCTCGGC TTCCGGGGCGAGCGG Rpal_0693 730294 - 730752 + | hypothetical protein Rpal_0694 730755 - 730913 + | hypothetical protein Rpal_0695 730910 - 733198 + | phage tail tape measure protein, TP901 family TERM 559 733444 - 733478 + G 89 -5.5 -5.1675 | overlap 733452 CGGATCGGCCGCCCC CTGCCGATGCTGCGG ATGGG CCGCGGCTTCATCGG TTTTTTCCTCGGTGC Rpal_0696 733213 - 733578 + | putative phage tail protein TERM 560 733662 - 733643 - g 86 -9.2 -4.59773 | CCGGATCTGCAAAAA CGAGCTCG GCAG CGAGCGCG GCGGCACGATGGAGA Rpal_0697 733575 - 733811 + | tail X family protein Rpal_0698 733808 - 734884 + | late control D family protein Rpal_0699 734897 - 735313 + | rare lipoprotein A TERM 561 735473 - 735418 - g 74 -12.4 -3.53811 | gap 1, opp_overlap 735418 TTGATCTGCGGCAAA TGCTTCCGCAGCCTGCCGCAGCCGGTC CGC GACCAGC-ACCGCCGGCTGTGGCGGCA TTTGCGGAAGTGGCG TERM 562 735418 - 735473 + G 74 -12.4 -3.54424 | gap 1, opp_overlap 735418 TTGATCTGCGGCAAA TGCTTCCGCAGCCTGCCGCAGCCGGTC CGC GACCAGCACCGCC-GGCTGTGGCGGCA TTTGCGGAAGTGGCG Rpal_0700 735313 - 735660 + | hypothetical protein TERM 563 736526 - 736492 - g 72 -12.9 -3.21099 | gap 1 GGTGCCGAGGATCAA GCACCACGTCG-CCGG CAAG CCGGTCGACCTGATGC TGGGGCTGATGGGCG Rpal_0701 735980 - 736696 + | DNA methylase N-4/N-6 domain protein Rpal_0702 736760 - 737029 + | hypothetical protein Rpal_0703 737615 - 737106 - | hypothetical protein Rpal_0704 738970 - 737642 - | hypothetical protein Rpal_0705 741449 - 739047 - | hypothetical protein TERM 564 740340 - 740323 - G 95 -4.7 -5.41143 | overlap 740324 CAGTGCGCAAAAAAA TCCGCCA GGGC CGGCGGC AAGATTTTGAGCATG TERM 565 741738 - 741779 + H 76 -11.5 -3.72695 | gap 1, overlap 741734 741744 741748 CGATGCCGTCGTGGT CGCGCGCGGCCCGTTTCGCG TTG CGCGGAGCGG-CTGTTTGCG TTTCGTCGCCGCGCT TERM 566 741744 - 741773 + H 79 -10.7 -3.87149 | gap 1, overlap 741734 741738 741748 CGTCGTGGTCGCGCG CGGCCCGTTTCGCG TTG CGCGGAGCGG-CTG TTTGCGTTTCGTCGC TERM 567 741748 - 741770 + H 72 -13.4 -2.70419 | overlap 741734 741744 741738 GTGGTCGCGCGCGGC CCGTTTCGCG TTG CGCGGAGCGG CTGTTTGCGTTTCGT TERM 568 741827 - 741808 - H 72 -7.9 -4.11484 | opp_overlap 741808 CTCAAGGCGGCAAAA TTTGCCC GCTGGT GGGCAAA TTGTTCCGCATAAGT TERM 569 742448 - 742486 + G 76 -15.3 -2.9062 | gap 1, opp_overlap 742438, overlap 742445 GCAATCTGCTCGAAG CGGCGATGCAGCGGCTGC CCGA GCAGCAGCGG-ATCGCCG TGATTCTGTCGTACC Rpal_0706 741952 - 742650 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_0707 742793 - 743617 + | flagellin domain protein TERM 570 743626 - 743656 + F 74 -14.7 -2.56271 | gap 1, overlap 743625 743622 743627 CGGCTGATGACGTCT GA-TCCGGGCCGGC ACCG GCCGGCCCGGCCTC CTCTTGTGATCGGAC TERM 571 743627 - 743654 + F 72 -14 -2.81872 | overlap 743626 743625 743622 GGCTGATGACGTCTG ATCCGGGCCGGC ACCG GCCGGCCCGGCC TCCTCTTGTGATCGG Rpal_0708 743679 - 745394 + | flagellar hook-associated 2 domain protein Rpal_0709 745394 - 745786 + | putative flagellar protein FliS Rpal_0710 745882 - 746181 + | hypothetical protein TERM 572 746214 - 746235 + F 75 -12.3 -3.57144 | GCCAGCGATTCTGGC GCGACGCGT TCCA ACGCGTTGC TTTCCGGATCAGCCA Rpal_0711 746559 - 747227 + | flagellar hook capping protein Rpal_0712 747247 - 748512 + | flagellar basal body FlaE domain protein Rpal_0713 748518 - 748775 + | hypothetical protein Rpal_0714 748800 - 749252 + | hypothetical protein TERM 573 749422 - 749392 - g 75 -13.2 -3.46982 | overlap 749390 GCTACACCAAGAAGA CCGCCGGTCAGGCC AGC AGCGTCACCGGCGG GGTCGGCACCGGCGT Rpal_0715 749274 - 751037 + | flagellar hook-associated protein FlgK Rpal_0716 751053 - 751964 + | flagellar hook-associated protein FlgL Rpal_0717 752760 - 751984 - | Enoyl-CoA hydratase/isomerase Rpal_0718 754431 - 752788 - | cyclohexanecarboxylate-CoA ligase Rpal_0719 755639 - 754488 - | cyclohexanecarboxyl-CoA dehydrogenase TERM 574 754758 - 754736 - G 73 -11.2 -3.64703 | overlap 754756 GGTCCTTTAGCCAAA GCGCCTGCAG GCA CAGCAGACGC GCGGCCTCGACCTGG TERM 575 755019 - 755007 - G 72 -4.7 -4.57341 | overlap 755009 AACGTTCTCGAAAAA CAGCG AGC CGCGG CCGATCGCACGCTGG Rpal_0720 756486 - 755704 - | 2-ketocyclohexanecarboxyl-CoA hydrolase TERM 576 755953 - 755973 + g 70 -8.2 -3.9122 | opp_overlap 755951, overlap 755951 755956 CGGCACGCAGAGATT GGCGAGGC CCATT GCCTCGGC TTCTTTGCCCGAGTA TERM 577 756313 - 756360 + g 71 -14.8 -2.6006 | gap 1, opp_overlap 756304 756305, overlap 756309 756312 GCAGAAGGCGCGGTC GCCGGCGCCGGCGAGCACGATCG CGC CGA-CGTCCTTGTCGTAGCCGGC CTTGTACAGTGCCTT Rpal_0721 757282 - 756515 - | 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase TERM 578 756754 - 756780 + g 78 -10.1 -4.07568 | gap 1 CGTTGACGGTGATGC CG-TGGCGGGCG TGCT CGCGCGCCAGCG TTTTCGAAAACGCGA Rpal_0722 757405 - 757932 + | transcriptional regulator, MarR family Rpal_0723 758021 - 759025 + | Alcohol dehydrogenase zinc-binding domain protein TERM 579 759178 - 759144 - f 81 -9.8 -4.13767 | overlap 759129 CGCCGGACCGGAAAA TGGCCGGCAGCGCGAC CCG GCAGAGCCGCCGGGCA GGGAGGACGACCGGC Rpal_0724 759194 - 760378 + | benzoyl-CoA reductase, subunit C TERM 580 760527 - 760491 - g 77 -16.5 -2.72344 | opp_overlap 760503, overlap 760503 CGCCAGCGCCAAGGA GCGCGGCGAGAAGGTCG CTG CGACCTTCGTGCCGGGC AATCTCAACGAGCTG TERM 581 761678 - 761658 - g 70 -10.4 -3.69702 | gap 1 GATGATCGAACAGAA GCGC-GCGG GCTT CCGCGGCGC CGCCTGAGGAGCGGA Rpal_0725 760375 - 761685 + | benzoyl-CoA reductase, subunit B Rpal_0726 761697 - 763010 + | benzoyl-CoA reductase, subunit A Rpal_0727 763104 - 763937 + | benzoyl-CoA reductase, subunit D TERM 582 764268 - 764289 + G 71 -9.4 -3.86015 | GCTGCTGATGCTCGA CGGCACCG ATTGGC CGGTGTCG TTTCTGGGCGCAATC Rpal_0728 764053 - 765627 + | benzoate-CoA ligase family Rpal_0729 765644 - 765889 + | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpal_0730 766408 - 765938 - | transcriptional regulator, BadM/Rrf2 family Rpal_0731 766942 - 766463 - | GCN5-related N-acetyltransferase Rpal_0732 767763 - 767041 - | ABC transporter related Rpal_0733 769553 - 767760 - | ABC transporter related TERM 583 768102 - 768149 + g 100 -21.2 -3.62046 | gap 1 GCCGGCGATGGTGTC GCCGCGATCGG-CGAGCCCAGCG ACC CGCAGGGCGCGGTCGACCGCGGC TTGTTCGCGCGCTCG Rpal_0734 770410 - 769550 - | inner-membrane translocator Rpal_0735 771674 - 770496 - | Extracellular ligand-binding receptor TERM 584 771700 - 771720 + r 85 -3.2 -5.2853 | overlap 771702 771703 CCCTCGATCTTCCCT TCGCGAGC GATCA GCTCGTCA TTTTGTTTTTCGGTA TERM 585 771772 - 771813 + r 75 -14.5 -2.75074 | gap 1, opp_overlap 771769, overlap 771769 771784 GAGCCAGATCAATTT GCGAGAC-GCCAATGAGGCC GAT GGTCGCATTGTCAGTCTCGC TGATATTGCGCTGCA Rpal_0736 773470 - 771851 - | benzoate-CoA ligase family TERM 586 772839 - 772829 - G 79 -4.6 -4.74103 | overlap 772832 CCCGTAAGCGAAAAA CAGC TTG GCCG CCGAGAACACCACGT TERM 587 773068 - 773046 - G 81 -14.8 -3.57144 | TCGGCCAGTTGCAAA GTCGGTGGCG GAG CGCCGCCGAC AGCGATCATCGTACG TERM 588 773422 - 773450 + g 73 -12.4 -3.41602 | opp_overlap 773443 CCCGGCCTTCCGCCA CGTTGCGGTCGA CGAAA TCGACCGCCGCG TTGTAGTCGCGTAGC Rpal_0737 773637 - 774128 + | 4-hydroxybenzoyl-CoA reductase, gamma subunit Rpal_0738 774125 - 776458 + | 4-hydroxybenzoyl-CoA reductase, alpha subunit TERM 589 777063 - 777036 - g 70 -13.4 -3.04144 | gap 1 GCTGTATGTCGAAGA CGGCCG-GGCGCA TCT TGCGCTGCGGCCG GGCGAGGTCGTGGTC Rpal_0739 776455 - 777438 + | 4-hydroxybenzoyl-CoA reductase, beta subunit Rpal_0740 778188 - 777421 - | transcriptional regulator, Crp/Fnr family Rpal_0741 778380 - 779492 + | Alcohol dehydrogenase GroES domain protein Rpal_0742 779528 - 780349 + | alpha/beta hydrolase fold TERM 590 780411 - 780398 - f 72 -3.7 -4.54477 | TTAAAATGCATAAAA GTCGC ATTT GCGGC TGGACTTCACGGCGA Rpal_0743 780478 - 782172 + | benzoyl-CoA-dihydrodiol lyase Rpal_0744 782343 - 783794 + | benzoyl-CoA oxygenase, B subunit TERM 591 783798 - 783817 + F 71 -12.8 -3.01745 | overlap 783792 ATCGAGACCTGAGGC GCGCCGCG CTGT CGCGGTGC TCTCGTTATTAGACC TERM 592 783842 - 783868 + F 91 -16.5 -3.60296 | opp_overlap 783831 TAGACCTATGTCTAA GGCCGCCCCGC CGAAA GCGGGGCAGCC TTTCGCATGCCGGTC TERM 593 785045 - 784994 - g 79 -11.4 -3.8917 | gap 1, overlap 784991 GCGCAACTACAAGAA GCTGGCGACGCTGCCGCCGCATCAG ACC CCGATGCCGGAGC-GCGACGCCCAC GAGCGCGCCACCAAC TERM 594 786911 - 786891 - g 77 -13.3 -3.53091 | opp_overlap 786892 786902 ATGGCCGGCGTCAAA GGCCGGATC GGC GATCCGACC ACGCTGTTCGAAGCC Rpal_0745 784122 - 787106 + | glutamate synthase (NADPH), homotetrameric Rpal_0746 789163 - 787130 - | Radical SAM domain protein TERM 595 787181 - 787213 + g 77 -13.4 -3.57144 | gap 1, opp_overlap 787165 787164 CTGCGGCTTCGGTCC GTCGCCGCGCACCGG GCGG CGGGTGC-CGGCGGC TTTGCCGGTCCCAGG TERM 596 787406 - 787437 + g 71 -14.4 -2.80816 | gap 1 CGGCTCGCTGGCGCC GTGGCG-CACCCCGC GCA GCGGGTTGACGCCGC TGTGATACATCGCAG Rpal_0747 789793 - 789230 - | putative transcriptional regulator, TetR family Rpal_0748 789992 - 791023 + | secretion protein HlyD family protein Rpal_0749 791020 - 793734 + | ABC transporter related Rpal_0750 793737 - 794864 + | ABC-2 type transporter Rpal_0751 795051 - 794872 - | hypothetical protein Rpal_0752 795194 - 796069 + | transcriptional regulator, IclR family TERM 597 796181 - 796141 - T 76 -9.1 -4.0641 | gap 3 CCGCAGGGAGAGAAA CCTGAACGGCGCGCCGC-GC GGGA GCTGCGGC-CGC-GTTCACG CTTGGACTGACGTCG Rpal_0754 797899 - 797252 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding TERM 598 797693 - 797675 - G 74 -8 -4.29508 | ATGCACACGAATAAA GCCCGGCA CGT CGCCGCGC GGCGAACAGTCGAGC Rpal_0755 798464 - 797880 - | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN TERM 599 798336 - 798323 - G 77 -6.7 -4.56597 | overlap 798327 CGCGGCGCGCAAAAA CGATC GCCG GATCG TCGGCACAGAGCGTG Rpal_0756 799639 - 798461 - | phosphonate metabolism protein PhnM Rpal_0757 800346 - 799636 - | phosphonate C-P lyase system protein PhnL Rpal_0758 801164 - 800346 - | phosphonate C-P lyase system protein PhnK Rpal_0759 802035 - 801157 - | phosphonate metabolism PhnJ Rpal_0760 803129 - 802032 - | phosphonate metabolism Rpal_0761 803735 - 803133 - | phosphonate C-P lyase system protein PhnH Rpal_0762 804211 - 803738 - | phosphonate C-P lyase system protein PhnG TERM 600 803780 - 803798 + g 85 -13.1 -4.08767 | opp_overlap 803770 GAAATCGACCTTGGT GGCCGCC GTCTG GGCGGCC TTTTCGGCGCGTGCG TERM 601 804028 - 804011 - G 73 -14.1 -3.12351 | CTCGCCGACATTGAA GGCGGCG CCAT CGCCGCC GATCCGGCCGCGCAG TERM 602 804145 - 804177 + g 93 -15.6 -4.15222 | gap 1, opp_overlap 804145 CCGACGCAGCCAAGA CCGCCATCGCGGCGC GGCG GCGC-GCGATCGCGG TTTGTTCGGGGAGGT TERM 603 804177 - 804145 - G 78 -15.6 -3.09878 | gap 1, opp_overlap 804145 CCGACGCAGCCAAGA CCGCCATCGCGGCGC GGCG GCGC-GCGATCGCGG TTTGTTCGGGGAGGT Rpal_0763 804323 - 805051 + | transcriptional regulator, GntR family Rpal_0764 805228 - 805073 - | hypothetical protein Rpal_0765 806241 - 805375 - | phosphonate ABC transporter, inner membrane subunit Rpal_0766 807119 - 806238 - | phosphonate ABC transporter, inner membrane subunit TERM 604 806319 - 806289 - G 70 -9.8 -3.63744 | overlap 806287 GCCTTCGGTAAAATA GTCGATCATCATCA CGG TGACGATGATCAGC AACAGGATGGCACTG TERM 605 806631 - 806579 - G 70 -13.5 -3.02144 | gap 2 CGACTTCGGCGAACA GCTTGCCGAGCGCACCGGCGGTATG AATCG CA-ATCGCCAGCACGCCCGGCA-GC GGTCCGAGCCCGAAC TERM 606 807168 - 807137 - R 86 -18 -2.62184 | GGGTGTCCGACATGA CGACGTGGGCGACC GGTC GGCCGCCCACGTCC GATGAAGTGCGAGGA Rpal_0767 808096 - 807188 - | phosphonate ABC transporter, periplasmic phosphonate binding protein TERM 607 808173 - 808135 - R 77 -13.2 -3.58037 | gap 2, overlap 808126 808137 GATGAACGGTCGAAA CACGGCAACCGCACGCGG GCGCG CCGCACGCGG-TGCCG-G ATAGGGGAGACGGCG TERM 608 808172 - 808137 - R 91 -16.9 -3.36569 | gap 1, overlap 808126 808135 TGAACGGTCGAAACA CGGCAACCGCACGCGG GCGCG CCGCACGCGG-TGCCG GATAGGGGAGACGGC Rpal_0768 809018 - 808206 - | phosphonate ABC transporter, ATPase subunit Rpal_0769 809198 - 809875 + | phosphonate metabolim protein, transferase hexapeptide repeat family Rpal_0770 809872 - 811065 + | phosphonate metabolism protein PhnM Rpal_0771 811088 - 811792 + | phosphonate metabolism protein Rpal_0772 812769 - 811789 - | hypothetical protein TERM 609 812996 - 812968 - H 83 -13.2 -3.89695 | GTCCGATAAAGATAA GCGA-CCGGCGCCG ACG CGGC-CCGGATCGC ACCATGAGGAAACTG Rpal_0773 813014 - 813208 + | hypothetical protein Rpal_0774 814244 - 813501 - | hypothetical protein TERM 610 814591 - 814618 + H 81 -13.4 -3.62096 | gap 1 TGTCACGATCGAGGC GGCGCGAACCGGC GAG GCCGG-TCGCGGC TTTGCGGTGGTCGGC Rpal_0776 815154 - 815630 + | protein of unknown function DUF123 Rpal_0777 815931 - 815608 - | CutA1 divalent ion tolerance protein Rpal_0778 816031 - 816246 + | regulatory protein, FmdB family TERM 611 816696 - 816668 - g 71 -9.4 -3.78934 | overlap 816649 816669 CGGCTGCCACAACAA CCGCCGCGCCGG CGCGC CCGGCACTGCCG CAGGAGCGTCGCGAG Rpal_0779 816352 - 816864 + | hypothetical protein TERM 612 817464 - 817422 - g 75 -9.6 -4.11216 | opp_overlap 817422 GGTCGATGTCGAAAA GCTGCCGAACGCCGGCGCCA CCG CGATGCCGGCGCTGGTCGGC TTCGATCTCAACTTC Rpal_0780 817036 - 817524 + | PEBP family protein Rpal_0781 817567 - 817827 + | hypothetical protein TERM 613 818059 - 818035 - T 70 -9.9 -3.55824 | opp_overlap 818002, overlap 818033 818036 GACGATCGACAAACA GCGCGGGCG GTTAGTA CGCCCGCGG ACAGTGATGAGAGTT TERM 614 818058 - 818036 - T 72 -13.4 -2.73012 | opp_overlap 818002, overlap 818033 818035 ACGATCGACAAACAG CGCGGGCG GTTAGTA CGCCCGCG GACAGTGATGAGAGT Rpal_0782 818775 - 818074 - | cob(II)yrinic acid a,c-diamide reductase TERM 615 818717 - 818754 + g 70 -10.5 -3.72576 | gap 1, overlap 818715 GGCGGATTGGCGTTG GCGGCGGCGAT-CTCGGC CGG GTCGGTCATCGCCGCCAC TTTGGTCAGCGCCGA Rpal_0783 819827 - 818772 - | nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase TERM 616 819918 - 819870 - H 74 -10.2 -3.68619 | gap 1 CGCAACTGACTCAAA CGCGGAAGCCCGGTCAACACCAC CTTC GCGTTGTTGACCCG-CAACCGCG TCGCAGCTAGCGTGC TERM 617 820436 - 820477 + G 85 -10 -4.22009 | opp_overlap 820435, overlap 820432 820430 CTGTCCGCATGCAAG CGCGCCGCCACCGTCGCT GTGTCG AGCGAAGGTGGCTACACG TTTGTGTTCGGTGAT Rpal_0784 820232 - 820663 + | protein of unknown function DUF1636 Rpal_0785 820660 - 821190 + | Adenosylcobinamide-phosphate guanylyltransferase Rpal_0786 821194 - 822198 + | cobalamin biosynthesis protein CobW TERM 618 822830 - 822863 + G 75 -9.5 -4.07568 | gap 1, overlap 822830 CCTGCGCGACGATTG CCC-GCCGCCGGCG CGGCCGA TGCCGGCCGCAGGG TTTTGGCCGGCCGAG TERM 619 823867 - 823886 + G 70 -10 -3.64912 | ATCCGGAGCTGCCGC CGCCGCAT CACT ATGTGGCG TTCTATCTATGGCTG TERM 620 825401 - 825365 - g 100 -10.6 -4.57569 | overlap 825366 CGAGCTGGCGAAAAA GCAGGCCGGCGCGCGG GTGTT CGGCGCGCGGCCCGGC AGTTACGGAGCCGGG TERM 621 825399 - 825366 - g 75 -13.8 -3.3422 | gap 1, overlap 825365 GAGCTGGCGAAAAAG CAGGCCGGCGCGCGG GTGTT CGGCGCGC-GGCCCG GCAGTTACGGAGCCG Rpal_0787 822333 - 826082 + | cobaltochelatase, CobN subunit TERM 622 826597 - 826564 - g 74 -8.1 -4.25283 | gap 1, overlap 826565 ACTGCTCGATGAAAA GCCGGCCGACAAGCAC GTT GTGATCACCGGCCG-C AATGCCCACCCGGCG Rpal_0788 826079 - 826705 + | cob(I)alamin adenosyltransferase TERM 623 827236 - 827182 - g 77 -4.2 -4.82901 | gap 3, overlap 827183 CTTTCTCGATAAAAA GGCGGCGC-TG-ATGCCGCACG-TGCT GGAC AGCTTCGCGCAGCTCGCACGCGACGCC GATATCGTGTTGGTC TERM 624 827918 - 827868 - g 72 -14.8 -2.78384 | gap 1 GTGGCGGCTACCAGA TGCTCGGGCGCAGCATCGCCG ATCCGGACGG CGTCGATGGTGCGCCCG-GCA CAGTCGAGGGGCTCG Rpal_0789 826853 - 828337 + | cobyric acid synthase CobQ Rpal_0790 829281 - 828310 - | cobalamin biosynthesis protein CobD Rpal_0791 830092 - 829283 - | periplasmic binding protein Rpal_0792 830159 - 831148 + | L-threonine-O-3-phosphate decarboxylase Rpal_0793 831939 - 831160 - | ABC transporter related Rpal_0794 832961 - 831936 - | transport system permease protein TERM 625 832340 - 832308 - G 72 -12 -3.54424 | gap 1, overlap 832309 832331 GCTGAGGGCGCGAAA TGCGGCGCGCTGGCT GAAC AGC-AGCACGCCGCC GGCGACGATGAACGG TERM 626 832339 - 832309 - G 75 -15.5 -2.72511 | gap 1, overlap 832308 832331 CTGAGGGCGCGAAAT GCGGCGCGCTGGCT GAAC AGC-AGCACGCCGC CGGCGACGATGAACG Rpal_0795 834027 - 832969 - | high-affinity nickel-transporter TERM 627 833642 - 833629 - G 70 -5.9 -4.19624 | overlap 833631 833632 GATCGCGAACAGAAA CAGCG CCGA CGCCG AGGTGCCGATCACCC Rpal_0796 834683 - 834360 - | small multidrug resistance protein Rpal_0797 835417 - 834680 - | Methyltransferase type 12 Rpal_0798 835570 - 836793 + | S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase TERM 628 837260 - 837279 + F 75 -4.2 -4.73682 | CTGCTGCAAAACGTA GCAGAGAG AGCG CTCGTTGC TTTTCTCTTCTCGGC Rpal_0799 837348 - 838754 + | hypothetical protein TERM 629 839043 - 838998 - g 80 -15.3 -3.31144 | overlap 838999 GGTTCAGGCGCAGAA TGTCAGCCTGACGCCGGCGGC GTCG GCCGCCGCCTTCAAGCAGACC GTCTGCACCAATGCC TERM 630 839042 - 838999 - g 87 -18.8 -2.58544 | overlap 838998 GTTCAGGCGCAGAAT GTCAGCCTGACGCCGGCGGC GTCG GCCGCCGCCTTCAAGCAGAC CGTCTGCACCAATGC Rpal_0800 838765 - 839343 + | TadE family protein Rpal_0801 839356 - 840045 + | hypothetical protein TERM 631 840433 - 840466 + F 93 -14.6 -4.02817 | gap 1 CTCTCCCCAGACTGG CCCCGCGCTCCCGAT ACGCA ACCGGGAG-GCGGGG TTATTGTTGTCCGGC Rpal_0802 840576 - 841469 + | transcriptional regulator, LysR family Rpal_0803 841734 - 842204 + | NADH dehydrogenase (ubiquinone) 24 kDa subunit Rpal_0804 842201 - 843757 + | NADH dehydrogenase (quinone) TERM 632 846259 - 846231 - g 70 -10.1 -3.65812 | CCTGTCGCAATACAA TGTCGGGGCGCAG ACG CGGCGCACCGCCA ATACGGTGTGGCACG Rpal_0805 843769 - 846615 + | formate dehydrogenase, alpha subunit Rpal_0806 846615 - 847445 + | formate dehydrogenase family accessory protein FdhD Rpal_0807 847435 - 847650 + | putative NAD-dependent formate dehydrogenase TERM 633 847742 - 847762 + G 84 -6.8 -4.72272 | overlap 847744 847745 ATGGGGCCGGACGGC TGTCCGGC GCACG GCCGGGTA TTTTTGATCGCGAAC TERM 634 847813 - 847828 + G 70 -10.4 -3.65529 | TTCAATCGTTGGCTG GTGCCG CCGG CGGCAC TTTGCATCCACCTCT Rpal_0808 847714 - 849363 + | major facilitator superfamily MFS_1 TERM 635 849376 - 849408 + F 95 -17.8 -3.48593 | gap 1, overlap 849379 849396 TGATCTCGACCGATG TTG-CGGGACGGCGG CGTG CCGCCGTCCCGTCGA TTCTCTGACGAGATG TERM 636 849379 - 849404 + F 100 -21.9 -2.63079 | overlap 849376 849396 TCTCGACCGATGTTG CGGGACGGCGG CGTG CCGCCGTCCCG TCGATTCTCTGACGA TERM 637 849396 - 849425 + F 71 -9.3 -3.737 | gap 1, overlap 849379 849376 GGACGGCGGCGTGCC GCCGTCCCGTC-GA TTC TCTGACGAGATGGC TTTGCTACGCGCTTC TERM 638 849609 - 849593 - f 84 -10.8 -4.14945 | CTAATAAGAATCAAA GCGGCC GGAAT GGCCGC CGAGGGAGTGAACGC Rpal_0809 849626 - 850879 + | putative glucose/sorbosone dehydrogenase Rpal_0810 851024 - 851620 + | putative cytochrome c4 precursor Rpal_0811 851695 - 852804 + | acyl-CoA dehydrogenase domain protein Rpal_0812 852801 - 853748 + | AAA ATPase Rpal_0813 853748 - 855139 + | VWA containing CoxE family protein Rpal_0814 855316 - 856842 + | AMP-dependent synthetase and ligase TERM 639 856969 - 856923 - T 91 -18 -3.21099 | overlap 856926 GGCTTGCACCAGCAA TGACGCAAGCTCCAGCTCCGAC TGT ATCGGACCCGGAGCTTGCGACC GCTGCGCCGCTCGTC TERM 640 856966 - 856926 - T 100 -22.7 -2.80016 | overlap 856923 TTGCACCAGCAATGA CGCAAGCTCCAGCTCCGAC TGT ATCGGACCCGGAGCTTGCG ACCGCTGCGCCGCTC Rpal_0815 857301 - 857017 - | putative iron oxidase precursor oxidoreductase protein Rpal_0816 859873 - 857441 - | hypothetical protein TERM 641 859651 - 859675 + g 85 -15.7 -3.6502 | CGCCGGTCGGATTGG TCGGCGACACC CAG GGCGTCGCCGA TTTCGGTGGGCGCTG Rpal_0817 861594 - 859972 - | cytochrome C family protein TERM 642 861583 - 861531 - G 71 -14 -2.82987 | gap 1, opp_overlap 861538 861540, overlap 861522 CGAACAGCGACGAGA TCCAGCTCCGGCGGCCGCGC-CGAC TTTG GTCGCGCGCAGCCGCCGCCCCCCGA GAGCCCCCCATTCCG Rpal_0818 863382 - 862336 - | sulfate ABC transporter, ATPase subunit TERM 643 862987 - 863038 + g 85 -7.8 -4.80882 | gap 1, opp_overlap 863003 CAGCTGGTTGGGGTA GC-GGTCGGCGAGCCAACCGAGCTG CAC CAGGTCGAGCAGATCGCCGACCCGC TTTTTGATCTCCGCT Rpal_0819 864286 - 863372 - | sulfate ABC transporter, inner membrane subunit CysW Rpal_0820 865127 - 864291 - | sulfate ABC transporter, inner membrane subunit CysT TERM 644 865253 - 865202 - R 71 -12.6 -3.09635 | gap 3, opp_overlap 865205 865210 865214, overlap 865206 865210 865214 ATTGCGAGGAGCGAA GCGA--CGAAGCAATCCAGTACCGC ATGCG GCGCT-CTGGATTGCTTCGCTTCGC TGGCAATGACGGGAG TERM 645 865205 - 865248 + r 71 -13.3 -3.06183 | gap 1, opp_overlap 865202 865206 865210 865214, overlap 865210 865214 GCGAGGAGCGAAGCG ACGAAGCAATCCAGTACCGC ATGCG GCGCT-CTGGATTGCTTCGC TTCGCTGGCAATGAC TERM 646 865247 - 865206 - R 80 -16.8 -2.55544 | gap 1, opp_overlap 865205 865210 865214, overlap 865202 865210 865214 CGAGGAGCGAAGCGA CGAAGCAATCCAGTACCGC ATGCG GCGCT-CTGGATTGCTTCG CTTCGCTGGCAATGA Rpal_0821 866409 - 865420 - | sulfate ABC transporter, periplasmic sulfate-binding protein Rpal_0822 867274 - 866534 - | phosphoadenosine phosphosulfate reductase TERM 647 866668 - 866658 - G 72 -4.6 -4.55287 | CCGACGGAGAGAAAA CCCG ACG CGAG TAACGGATGCTGCGG Rpal_0823 867573 - 868442 + | phosphoadenosine phosphosulfate reductase Rpal_0824 868464 - 870374 + | sulfate adenylyltransferase, large subunit Rpal_0825 871748 - 870381 - | signal transduction histidine kinase TERM 648 871090 - 871074 - G 79 -4.3 -4.82901 | opp_overlap 871075 871088, overlap 871075 CGCGCGCGACAAAAA CCAGCGA TAC TCGCCGT CTCTGCCACGCAGCG Rpal_0826 872857 - 871880 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Rpal_0827 874270 - 872858 - | Amidase TERM 649 873783 - 873761 - G 70 -11.2 -3.54424 | GCCGAGCGCCGCAAA CGTCAGCCGC GCG GCGACTGCCG AGCCGGAACCGGACG TERM 650 874031 - 874057 + g 77 -13.6 -3.60475 | ATACATGTCCTTGTG GGCCAGCGGCAC GCC GTGCAGCGGGCC TTTGCGCTCGCCCTT Rpal_0828 874461 - 874267 - | hypothetical protein Rpal_0829 875533 - 874475 - | oligopeptide/dipeptide ABC transporter, ATPase subunit Rpal_0830 876428 - 875538 - | binding-protein-dependent transport systems inner membrane component Rpal_0831 877401 - 876448 - | binding-protein-dependent transport systems inner membrane component Rpal_0832 879260 - 877599 - | 4-phytase TERM 651 878816 - 878864 + g 91 -11.8 -4.20367 | opp_overlap 878810, overlap 878820 878860 CCGAGACCAGCGTCG GCATCCGCGATGCGGTCAC-GCCG ATC TGGCTGGGATCGTATTGCGG-TGC TTCTTTGTTGAGCAC Rpal_0833 879448 - 881046 + | extracellular solute-binding protein family 5 TERM 652 881117 - 881060 - f 71 -9.2 -3.69338 | gap 2, opp_overlap 881075, overlap 881062 881073 881074 AACCAAGCGCAACAA CAGCGATC-ACAAA-GCGGGCTGCGTAC GAAA GTGCGCAGCCCTTTTTTGTCGCCCGCTG CACAAACTTATCGCT TERM 653 881102 - 881073 - f 70 -7.7 -3.99062 | opp_overlap 881075, overlap 881062 881060 881074 AACAGCGATCACAAA GCGGGCTGCGTAC GAAA GTGCGCAGCCCTT TTTTGTCGCCCGCTG TERM 654 881075 - 881100 + F 100 -16.9 -5.24129 | opp_overlap 881074 881073 881062 881060 CAGCGATCACAAAGC GGGCTGCGTAC GAAA GTGCGCAGCCC TTTTTTGTCGCCCGC Rpal_0834 881377 - 881994 + | Methyltransferase type 12 TERM 655 881997 - 882049 + T 89 -17 -3.14344 | overlap 881999 CAAGCCGGCATGAGC TACTTTGGCGATCGTCCCGGCGAG GCTCG CAAGCCGGGACGATCGCAAGGGTG TTAGTCCGGGAAGTC TERM 656 881999 - 882047 + T 89 -17.4 -3.13403 | overlap 881997 AGCCGGCATGAGCTA CTTTGGCGATCGTCCCGGCGAG GCTCG CAAGCCGGGACGATCGCAAGGG TGTTAGTCCGGGAAG Rpal_0835 882484 - 882050 - | EF hand domain protein Rpal_0836 884868 - 882505 - | TonB-dependent receptor TERM 657 884973 - 884949 - H 74 -9.2 -3.90112 | overlap 884950 TCCTTGCGAATGAAA GGTCGCGCCC ATGCG GGACGCGACA GCAGGTACACAGGCC TERM 658 884972 - 884950 - H 70 -12.7 -2.93853 | overlap 884949 CCTTGCGAATGAAAG GTCGCGCCC ATGCG GGACGCGAC AGCAGGTACACAGGC TERM 659 885126 - 885107 - H 82 -11.4 -4.00042 | gap 1, overlap 885104 885108 CTTTCGAGCAAACAA CGCCG-GCC GCG GGCGCGGCG GCCCCCTAGAAAAGC Rpal_0837 885268 - 885972 + | transcriptional regulator, Crp/Fnr family Rpal_0838 886078 - 887019 + | diguanylate cyclase with PAS/PAC sensor Rpal_0839 889186 - 887327 - | hypothetical protein TERM 660 888907 - 888925 + g 76 -8.2 -4.26076 | opp_overlap 888907 888906, overlap 888911 ATGAAAAATAATAAT CAGACGAT GTG ATCGTTTG TTTTGGTGCCCGTCG TERM 661 888911 - 888921 + g 81 -5.4 -4.72007 | opp_overlap 888907 888906, overlap 888907 AAAATAATAATCAGA CGAT GTG ATCG TTTGTTTTGGTGCCC Rpal_0840 889629 - 889183 - | hypothetical protein TERM 662 889480 - 889469 - G 72 -4.4 -4.44974 | TCAAAGCTGACAAAA TGGA ATCT TCCA TCTGCAAGCTTTTTG Rpal_0841 890840 - 889626 - | hypothetical protein Rpal_0842 891994 - 891569 - | protein of unknown function DUF307 Rpal_0843 892203 - 892526 + | hypothetical protein TERM 663 892578 - 892596 + T 70 -7.4 -4.03234 | overlap 892588 CTTTCTGCCACGGCG TCGCCC CACGGCT GGGCGA TTTCTGTCGCGCCGC Rpal_0844 894151 - 892559 - | Gamma-glutamyltransferase TERM 664 892878 - 892834 - G 87 -18.4 -2.70936 | opp_overlap 892873, overlap 892826 892831 TCACGAACGACAGGA TCTGCGCCACCGCCGGCAGG ATGCG CCGGCCGCCGGAGGCGCCGA GTGCTAAGCGGCGGC TERM 665 894229 - 894173 - R 71 -10.7 -3.53012 | overlap 894181 894184 GCTTTCGCTGGCAAA GGGGACAACAC-GCGGCGGGGCCGGCG GACTA CGCCGGCGCCG-CGCAGTGTAGGGCCT GCTGCGAGCCGCTGC TERM 666 894221 - 894181 - R 93 -16.9 -3.39668 | overlap 894173 894184 TGGCAAAGGGGACAA CAC-GCGGCGGGGCCGGCG GACTA CGCCGGCGCCG-CGCAGTG TAGGGCCTGCTGCGA TERM 667 894217 - 894184 - R 83 -17.4 -2.55508 | gap 1, overlap 894181 894173 CAAAGGGGACAACAC GCGGCGGGGCCGGCG GACTA CGCCGGCGCCG-CGC AGTGTAGGGCCTGCT Rpal_0845 896909 - 894270 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 668 897160 - 897185 + r 100 -21.9 -3.32844 | opp_overlap 897136 897160 TCCACACAAAGCAAA GGGCCGGCGGA TCGC TCCGCCGGCCC TTCTGAAATACGAGC TERM 669 897185 - 897160 - R 100 -21.9 -4.18042 | opp_overlap 897160, overlap 897136 TCCACACAAAGCAAA GGGCCGGCGGA TCGC TCCGCCGGCCC TTCTGAAATACGAGC Rpal_0846 897634 - 897233 - | hypothetical protein TERM 670 897960 - 897971 + H 81 -7.2 -4.42619 | overlap 897939 897958 GCGAAGCTCCCCTGC GGCG TATT CGCC TTTTGTCGGGTGTTG Rpal_0847 898066 - 898260 + | hypothetical protein Rpal_0848 899526 - 898261 - | acyl-CoA dehydrogenase domain protein Rpal_0849 899951 - 899607 - | putative cytochrome c precursor (cytochrome c552)(CycB) Rpal_0850 900394 - 899960 - | hypothetical protein Rpal_0851 902400 - 900583 - | diguanylate cyclase/phosphodiesterase TERM 671 902866 - 902838 - g 86 -16.7 -3.61398 | CTGCCTGTTCAACAA TGCCGGCGGTCCG GCG CAGACCGGCGGCA TCGAAGGCCTCGAGG Rpal_0852 902578 - 903420 + | short-chain dehydrogenase/reductase SDR TERM 672 903503 - 903457 - T 81 -15.3 -3.06183 | gap 1, opp_overlap 903452 903458 903462 903466 903472, overlap 903463 903466 GTCATTGCGAGCGAA GCGAAACAATCCAG-AGCGCCG AGCA CGGGGCTTCTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 673 903458 - 903502 + T 80 -16.6 -2.55544 | gap 1, opp_overlap 903457 903463 903466, overlap 903452 903462 903466 903472 TCATTGCGAGCGAAG CGAAACAATCCAG-AGCGCCG AGCA CGGGGCTTCTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 674 903497 - 903463 - T 84 -13.7 -3.76952 | gap 1, opp_overlap 903462 903458 903452 903466 903472, overlap 903457 903466 GCGAGCGAAGCGAAA CAATCCAG-AGCGCCG AGCA CGGGGCTTCTGGATTG CTTCGTCGCTTCGCT TERM 675 903494 - 903466 - T 76 -9.6 -4.01381 | gap 1, opp_overlap 903462 903458 903452 903466 903472, overlap 903463 903457 AGCGAAGCGAAACAA TCCAG-AGCGCCG AGCA CGGGGCTTCTGGA TTGCTTCGTCGCTTC Rpal_0853 904924 - 903545 - | cytochrome P450 Rpal_0854 906439 - 905045 - | adenylate/guanylate cyclase Rpal_0855 906496 - 907470 + | peptidase M48 Ste24p TERM 676 907498 - 907517 + F 100 -16.4 -5.65496 | GATGGATGTTTCGAA GGCCCCGG TTCG CCGGGGCC TTTTTGTTTTTGCTG TERM 677 907773 - 907755 - g 70 -11.6 -3.39595 | CGCAACGATCGATAA CTCCCGCC GCT GGCGGGTG CTGGCCATCGTGGTC Rpal_0856 907723 - 909138 + | major facilitator superfamily MFS_1 Rpal_0857 910322 - 909135 - | aminotransferase class V Rpal_0858 911232 - 910378 - | hypothetical protein TERM 678 910448 - 910486 + g 70 -10.3 -3.63569 | overlap 910447 910476 TCCTTGATCTCGGTC GCG-AGCGGACTCGGCAGA ATC TCGGCCGGG-CTGCTGCGC TTCTTGCAGCCTTCC TERM 679 910812 - 910822 + g 72 -8.2 -4.07568 | overlap 910797 GCCGGTCGGCGCTTC GCCC GTC GGGC TTTTCGAACGCAAGA Rpal_0859 911997 - 911266 - | nuclease (SNase domain protein) Rpal_0860 913850 - 912111 - | hypothetical protein TERM 680 912194 - 912217 + g 75 -13.8 -3.29958 | opp_overlap 912175, overlap 912192 AGGTCACTTCCGGTC CGCCGACCAG AATG CGGGTCGGCG TCTTCATCTTGTTCC TERM 681 912861 - 912839 - G 73 -9.2 -3.98661 | overlap 912841 GATAGGCACGATAAA GATCGATCAG CGG CTGATCGATG ATCGGATCGGACGAG TERM 682 912859 - 912841 - G 72 -11.8 -3.5812 | overlap 912839 TAGGCACGATAAAGA TCGATCAG CGG CTGATCGA TGATCGGATCGGACG TERM 683 912992 - 912981 - G 72 -7.2 -4.16921 | overlap 912973 912972 GAAGAACCGCGAAAA CCGC GAAT GCGG CGGCGGGGCTAGTGC Rpal_0861 914305 - 915171 + | peptidase C14 caspase catalytic subunit p20 TERM 684 915241 - 915202 - T 100 -26 -3.28712 | gap 1, opp_overlap 915208, overlap 915208 GTCTTTTTCTGAGAA CGA-AAAGGCCTGACGCGG TGC CCGCGTCAGGCCTTTGTCG TTGACAGCGTGTGGT TERM 685 915208 - 915234 + T 100 -23.8 -4.05446 | opp_overlap 915202 915208 TTCTGAGAACGAAAA GGCCTGACGCGG TGC CCGCGTCAGGCC TTTGTCGTTGACAGC TERM 686 915234 - 915208 - T 100 -23.8 -4.48987 | opp_overlap 915208, overlap 915202 TTCTGAGAACGAAAA GGCCTGACGCGG TGC CCGCGTCAGGCC TTTGTCGTTGACAGC Rpal_0862 916020 - 915262 - | Carbonate dehydratase Rpal_0863 916739 - 916107 - | putative phage repressor Rpal_0864 917070 - 917414 + | protein of unknown function DUF952 TERM 687 917971 - 917937 - g 70 -12.9 -3.01712 | gap 2, opp_overlap 917927 TCTCGTCGCCGAACA CGCCG-GGCCTGC-GCA ATC TGCAGCAGGCGGCGGCG CTCGACGATCTGCTG Rpal_0865 917411 - 918505 + | Dihydroorotate oxidase TERM 688 918624 - 918595 - T 77 -14.3 -2.85351 | gap 1, opp_overlap 918592 918591, overlap 918557 918553 CTTGGGCACATGAGA TTCCGGGTTCGCGC TGC GCGCGC-CCCGGAA TGATGCCTTGTAGTT Rpal_0866 919376 - 918642 - | beta-lactamase domain protein Rpal_0867 920227 - 919520 - | carbonic anhydrase Rpal_0868 921687 - 920365 - | MATE efflux family protein Rpal_0869 922008 - 921706 - | hypothetical protein Rpal_0870 923948 - 922080 - | ATP dependent DNA ligase TERM 689 923766 - 923735 - G 72 -15.2 -2.79183 | gap 1, opp_overlap 923737, overlap 923744 CGTAGTCGTAGGACA GGCCGAACAGCACCG GGT CGGTGC-GTTCGGCG ATCAGGGCGCGGATC Rpal_0871 924991 - 923945 - | putative metallo-hydrolase/oxidoreductase Rpal_0872 925050 - 925985 + | Methyltransferase type 11 TERM 690 926078 - 926119 + T 74 -12.9 -3.25823 | opp_overlap 926084 926089, overlap 926088 CAATGACGAGGATGC CGCAAACAAAACCCCGGCC GCTA GGCCGGGGCTCTGTGTCCG TTGCTGTGAGGCAAA TERM 691 926113 - 926084 - T 100 -17.9 -3.56092 | opp_overlap 926078 926088, overlap 926089 CGAGGATGCCGCAAA CAAAACCCCGGCC GCTA GGCCGGGGCTCTG TGTCCGTTGCTGTGA TERM 692 926088 - 926109 + T 71 -12.9 -3.03006 | opp_overlap 926084 926089, overlap 926078 GATGCCGCAAACAAA ACCCCGGCC GCTA GGCCGGGGC TCTGTGTCCGTTGCT TERM 693 926108 - 926089 - T 100 -16.4 -4.87133 | opp_overlap 926088 926078, overlap 926084 ATGCCGCAAACAAAA CCCCGGCC GCTA GGCCGGGG CTCTGTGTCCGTTGC Rpal_0873 927486 - 926137 - | porin Rpal_0874 927830 - 929050 + | putative amino-acid ABC transport system, periplasmic binding protein TERM 694 929113 - 929145 + F 82 -11.2 -4.08216 | overlap 929114 ATCCCGACACGTGGT TGCGTATGGCCGGG CTCGT CCCGGCCATTCACG TTTTAGGGCGGCTCC TERM 695 929114 - 929144 + F 71 -12.5 -3.04715 | overlap 929113 TCCCGACACGTGGTT GCGTATGGCCGGG CTCGT CCCGGCCATTCAC GTTTTAGGGCGGCTC TERM 696 929461 - 929438 - g 86 -18.2 -3.05384 | opp_overlap 929433 CGGGGCGGCACCTAA CCTCTCCCCG TTCG CGGGGAGAGG TCGACTTGCTGGCGT TERM 697 929761 - 929734 - g 77 -13.4 -3.53444 | gap 1, overlap 929715 CGATCCGCGTCGAAA CCCG-CACCGGCG ATA CGCCGGTGTCGCG GCGGACACGGCAGCG TERM 698 930033 - 930081 + G 84 -16.9 -3.14132 | gap 2 CGCTTTCTGGTGCCG CAGCCCT-TTGTC-CCCTCTCCC GCAAG GGGAGAGGGAGACGAGAGGGCCG TTGATCAAGCCGACA Rpal_0875 929226 - 931952 + | DEAD/H associated domain protein Rpal_0876 932017 - 932739 + | metallophosphoesterase TERM 699 932773 - 932806 + T 83 -16.1 -2.94747 | gap 1, opp_overlap 932769 932800 CCTTTCAACGAGTCA TTCCGGG-GCGCTCAC GCA GTGAGCGAACCCGGAA TCTCTGGTGCGCTAG TERM 700 932874 - 932824 - T 77 -14.1 -3.28712 | overlap 932800 932869 TCTGGTGCGCTAGAA TC-TCGGGATTCCGGGTTCGCGAGC TGC GCTCGCGC-CCCGGAATGACGACGA GAAGAATCCTCACGC Rpal_0877 933747 - 932884 - | transcriptional regulator, LysR family Rpal_0878 933846 - 934766 + | protein of unknown function DUF6 transmembrane Rpal_0879 934852 - 936198 + | putative manganese transport protein Rpal_0880 937163 - 936363 - | hypothetical protein Rpal_0881 938122 - 937160 - | protein of unknown function DUF81 TERM 701 938332 - 938294 - R 73 -10.9 -3.54475 | gap 1, opp_overlap 938294 GCCGGGATTACAGAA TCGGTCGCAGTCGGGGCT TTTT AGGCCCGGCAGCG-CCGA TCTCGTCCATCTGAT Rpal_0882 941691 - 938359 - | Sel1 domain protein repeat-containing protein TERM 702 940680 - 940690 + g 72 -8.2 -4.12188 | opp_overlap 940668, overlap 940654 CGATGCCGCGCAGCG CGCC GAT GGCG TTTTCGAGCTGCTGC Rpal_0883 942502 - 941945 - | transcriptional regulator, TetR family TERM 703 942790 - 942804 + H 85 -5.6 -4.99035 | ACATCCGCCCCGCCT TGCGTC TTC GTCGCA TTTTTATCTCGCTCA Rpal_0884 942835 - 943221 + | hypothetical protein Rpal_0885 943315 - 945105 + | acyl-CoA dehydrogenase domain protein Rpal_0886 945276 - 946484 + | acetyl-CoA acetyltransferase TERM 704 946588 - 946560 - f 72 -11.7 -3.27022 | overlap 946563 946566 946567 GGGAGGGGAGACGAA CAACAACCGCCGC GCC GCAACGGCTGCTG GCATCGAAGGAGCTA TERM 705 946585 - 946563 - f 74 -9.8 -3.77588 | overlap 946560 946566 946567 AGGGGAGACGAACAA CAACCGCCGC GCC GCAACGGCTG CTGGCATCGAAGGAG TERM 706 946582 - 946566 - f 70 -7.9 -4.0156 | overlap 946563 946560 946567 GGAGACGAACAACAA CCGCCGC GCC GCAACGG CTGCTGGCATCGAAG Rpal_0887 946609 - 948825 + | 3-hydroxyacyl-CoA dehydrogenase NAD-binding TERM 707 949152 - 949128 - T 100 -17.9 -4.17309 | opp_overlap 949128 CAGTACAAATAACAA GGGCCGGATCA TCG CGATCCGGCCC TTTGTCTTTCCCCGC TERM 708 949128 - 949152 + T 100 -17.2 -4.32857 | opp_overlap 949128 CAGTACAAATAACAA GGGCCGGATC ATCGC GATCCGGCCC TTTGTCTTTCCCCGC TERM 709 949190 - 949239 + T 75 -13.8 -3.09635 | gap 2, opp_overlap 949195 949200 949204, overlap 949196 949200 949209 ACTCCGTCATTGCGA GCGAAGCGAAGCAATCCAGTTCAG TGCA CCGCACTGGATTGCTTCG--TCGC TTCGCTCCTCGCAAT TERM 710 949236 - 949195 - T 84 -16.7 -3.06183 | opp_overlap 949190 949196 949200 949209, overlap 949200 949204 GTCATTGCGAGCGAA GCGAAGCAATCCAGTTCAG TGCA CCGCACTGGATTGCTTCGT CGCTTCGCTCCTCGC TERM 711 949196 - 949235 + T 86 -18 -2.55544 | opp_overlap 949195 949200 949204, overlap 949190 949200 949209 TCATTGCGAGCGAAG CGAAGCAATCCAGTTCAG TGCA CCGCACTGGATTGCTTCG TCGCTTCGCTCCTCG TERM 712 949231 - 949200 - T 76 -13.8 -3.19192 | opp_overlap 949196 949190 949200 949209, overlap 949195 949204 TGCGAGCGAAGCGAA GCAATCCAGTTCAG TGCA CCGCACTGGATTGC TTCGTCGCTTCGCTC TERM 713 949200 - 949231 + T 70 -11.6 -3.22388 | opp_overlap 949200 949195 949204, overlap 949196 949190 949209 TGCGAGCGAAGCGAA GCAATCCAGTTCAG TGCA CCGCACTGGATTGC TTCGTCGCTTCGCTC Rpal_0888 949891 - 949277 - | Glutathione S-transferase domain Rpal_0889 950013 - 950504 + | transcriptional regulator, MarR family TERM 714 951210 - 951185 - g 79 -6.8 -4.61231 | gap 1, opp_overlap 951194 951207 CGACATGGTCAAAAA GCTGC-GCGTC TCGGT GGCGCTGCAGC CGGTCGCGACCGCGC Rpal_0890 950598 - 951968 + | glutamate/cysteine ligase Rpal_0891 952114 - 952665 + | Apple TERM 715 952732 - 952720 - T 70 -10.5 -3.61715 | overlap 952707 CACCGCGGTGAAGAA CCGCG CGA CGCGG AAGCCTGAGAACCAA Rpal_0892 953469 - 952699 - | signal peptidase I TERM 716 953194 - 953231 + g 70 -11.2 -3.53012 | gap 1, opp_overlap 953190 953185 953188 953187 953223 GCGAAACACCACCAC GTCGCCGCG-GTGCGGC GTAGA GCCGAACACGCGGCCGC TTTCCGGCACCGAGA Rpal_0893 954893 - 953466 - | peptidase U62 modulator of DNA gyrase Rpal_0894 955015 - 955236 + | protein of unknown function DUF433 Rpal_0895 955236 - 955565 + | hypothetical protein Rpal_0896 955648 - 956118 + | transcriptional regulator, MarR family Rpal_0897 956233 - 956658 + | OsmC family protein Rpal_0898 957439 - 956891 - | Invasion associated locus B family protein TERM 717 957828 - 957786 - H 74 -4.7 -4.65916 | opp_overlap 957793, overlap 957788 957809 CCGAGCGCAATAAAA CT-GCACGGCCGGTCACGCCG AAA CGGCGGGCTCG-CTGTGCTAG TCATAGGGAGCGCGG Rpal_0899 957848 - 958705 + | cytochrome c oxidase, subunit II Rpal_0900 958773 - 960398 + | cytochrome c oxidase, subunit I Rpal_0901 960471 - 961409 + | protoheme IX farnesyltransferase TERM 718 961514 - 961477 - g 80 -9 -4.18506 | opp_overlap 961477 961476, overlap 961478 CGATGCGCAAAAGAA GCGCCAGCGCGAACGC TCGATC GCGATCGCAGTCGCGC TCGGCGTGCTGGTGG Rpal_0902 961421 - 961588 + | CoxF protein Rpal_0903 961603 - 962229 + | cytochrome c oxidase assembly protein CtaG/Cox11 Rpal_0904 962301 - 963155 + | cytochrome c oxidase subunit III Rpal_0905 963318 - 963713 + | protein of unknown function DUF983 Rpal_0906 963710 - 964513 + | Surfeit locus 1 family protein Rpal_0907 964660 - 966078 + | threonine synthase Rpal_0908 966075 - 967364 + | peptidase M16 domain protein Rpal_0909 967426 - 968013 + | GCN5-related N-acetyltransferase TERM 719 968149 - 968129 - f 73 -12.5 -3.14468 | GCTCAGGAGATTGAA CGGGTGCCG TCG CGGCACCGG ATCGCACGCGCGGCG Rpal_0910 968132 - 968764 + | hypothetical protein TERM 720 968846 - 968871 + T 100 -21.9 -4.13995 | opp_overlap 968846 TAAACAAAACAAAAA GGCCGGCGCGA TCGC TCGCGCCGGCC TTTGATTTGTAACAG TERM 721 968871 - 968846 - T 100 -21.9 -5.67711 | opp_overlap 968846 TAAACAAAACAAAAA GGCCGGCGCGA TCGC TCGCGCCGGCC TTTGATTTGTAACAG Rpal_0911 969386 - 968895 - | H+transporting two-sector ATPase B/B' subunit Rpal_0912 969949 - 969392 - | H+transporting two-sector ATPase B/B' subunit TERM 722 969966 - 969997 + r 71 -5.7 -4.28254 | overlap 969967 GGCTTCTCCTGTTCG GCCGGTCGCGACC CCGGAA GGTCAGGACCGGA TTTTGGATCTTAGAG Rpal_0913 970234 - 970007 - | H+transporting two-sector ATPase C subunit Rpal_0914 971029 - 970283 - | ATP synthase F0, A subunit Rpal_0915 971485 - 971099 - | FoF1 ATP synthase, subunit I Rpal_0916 971788 - 972411 + | DSBA oxidoreductase Rpal_0917 972457 - 973041 + | hypothetical protein Rpal_0918 973065 - 973538 + | protein of unknown function UPF0047 TERM 723 973693 - 973668 - T 100 -16.1 -4.64861 | opp_overlap 973664 973669, overlap 973669 GTCTCCTAAAACAAA GCGGCCGCGGA TTGC TCCGCGGCCGT TGCTATTTGGTCGGT TERM 724 973692 - 973669 - T 95 -19.6 -3.38435 | opp_overlap 973669 973664, overlap 973668 TCTCCTAAAACAAAG CGGCCGCGGA TTGC TCCGCGGCCG TTGCTATTTGGTCGG TERM 725 973669 - 973692 + T 100 -19.6 -3.48269 | opp_overlap 973668 973669, overlap 973664 TCTCCTAAAACAAAG CGGCCGCGGA TTGC TCCGCGGCCG TTGCTATTTGGTCGG Rpal_0919 975400 - 973736 - | General substrate transporter TERM 726 974051 - 974021 - G 70 -10.4 -3.75738 | overlap 974018 974024 CACCAGGACGAACAA CAGTCCGATCACCG CTG CGGTGCTCGAATTG AACACGTCGAACGGG TERM 727 975908 - 975939 + G 70 -2.2 -4.58663 | gap 1, overlap 975931 GACGTCGACCTGGTG CTGCTCGACCTCAAG ATG CCTGGGATC-AGCGG TTTTTCCGGGCTGAT Rpal_0920 975737 - 976414 + | two component transcriptional regulator, LuxR family TERM 728 976511 - 976467 - T 100 -23.1 -3.73775 | opp_overlap 976472 976476, overlap 976468 GTCATTGCGAGCAAA GCGAAGCAATCCAGAGGCC ATGCGTG GGCCTCTGGATTGCTTCGT CGACTTCGTCTCCTC TERM 729 976510 - 976468 - T 100 -26.6 -2.84051 | opp_overlap 976472 976476, overlap 976467 TCATTGCGAGCAAAG CGAAGCAATCCAGAGGCC ATGCGTG GGCCTCTGGATTGCTTCG TCGACTTCGTCTCCT TERM 730 976472 - 976506 + T 95 -20.2 -3.19157 | opp_overlap 976468 976467, overlap 976476 TGCGAGCAAAGCGAA GCAATCCAGAGGCC ATGCGTG GGCCTCTGGATTGC TTCGTCGACTTCGTC TERM 731 976476 - 976502 + T 79 -13.8 -3.40639 | opp_overlap 976468 976467, overlap 976472 AGCAAAGCGAAGCAA TCCAGAGGCC ATGCGTG GGCCTCTGGA TTGCTTCGTCGACTT Rpal_0921 980085 - 976576 - | integral membrane sensor hybrid histidine kinase TERM 732 980239 - 980189 - R 100 -24.6 -4.28361 | opp_overlap 980185 980199, overlap 980194 GCAAGTCTACCAAAA CAGAAGGGGCGCCTGCGACAGGGA TTT TCCCAGCCGCGGGCGCCCCCGCCG AAAATCATTACCGCG TERM 733 980234 - 980194 - R 100 -26.1 -3.99481 | opp_overlap 980185 980199, overlap 980189 TCTACCAAAACAGAA GGGGCGCCTGCGACAGGGA TTT TCCCAGCCGCGGGCGCCCC CGCCGAAAATCATTA Rpal_0922 981502 - 980273 - | 5-aminolevulinic acid synthase Rpal_0923 982787 - 981723 - | beta-lactamase domain protein TERM 734 982259 - 982284 + g 70 -2.6 -4.63527 | gap 2, opp_overlap 982263, overlap 982263 982265 982268 CCTTGGCGAGCCGAC GATACGCTGCCG GCAG CGGCA-CG-GTC TTTTTCAGATAGTCC TERM 735 982859 - 982847 - R 74 -4.7 -4.62069 | GCGCCAGCCGAAAAA CCGTC AGG GGCGG CTGCAGTCCTCACAG TERM 736 982905 - 982930 + r 100 -21.9 -3.98683 | opp_overlap 982905 ATCTGGACGCAAAAA GGGCCGGTGGC GCGC GCCACCGGCCC TTTCCTTCATATCGT TERM 737 982930 - 982905 - R 100 -21.9 -4.66163 | opp_overlap 982905 ATCTGGACGCAAAAA GGGCCGGTGGC GCGC GCCACCGGCCC TTTCCTTCATATCGT Rpal_0924 985091 - 982953 - | methyl-accepting chemotaxis sensory transducer TERM 738 985274 - 985254 - R 100 -15.4 -5.0925 | TTCGAAAATGAAAAA GGGCCGGC GCGAG GCCGGCCC TTCCAACTTCCGAAG Rpal_0925 986038 - 985307 - | porin Rpal_0926 986608 - 987357 + | ABC transporter related TERM 739 987438 - 987469 + G 79 -10.8 -3.99324 | gap 1, overlap 987441 987442 TCGCCGGTATCGTGG CGCTGTCGCTCGGCG GCG CGCCGATCGGC-GTG TTTCTGATGCTGCGA TERM 740 987441 - 987467 + G 74 -12.2 -3.58864 | overlap 987438 987442 CCGGTATCGTGGCGC TGTCGCTCGGCG GCG CGCCGATCGGCG TGTTTCTGATGCTGC Rpal_0927 987362 - 988234 + | ABC-3 protein TERM 741 988479 - 988447 - g 70 -6.1 -4.18488 | ACCGACGCCAAGAAA GTCGCCGACGCCAAG CTG CTGGTCGTCAACGGC CTCGGCCTCGAAGGC Rpal_0928 988240 - 989157 + | periplasmic solute binding protein Rpal_0929 989304 - 990353 + | cobalamin synthesis protein P47K TERM 742 991269 - 991246 - g 72 -14.6 -2.77899 | gap 1, overlap 991243 GGTGCGCATGAACGA CGGCGC-CGAG ATC CTCGCGCGCCG CAACGACACCCCGCC Rpal_0930 990350 - 991369 + | WD-40 repeat protein TERM 743 991577 - 991622 + G 74 -14.7 -2.97747 | gap 1, overlap 991620 CGCCTTCGTCGACCT GGCGATGCATCTGGCCGGTGCC GAC GGCGCGGTCCGGGTG-ATCGCC TATGTGGTCTCCGGC Rpal_0931 991404 - 992126 + | MgtC/SapB transporter Rpal_0932 992187 - 992585 + | conserved hypothetical protein; putative signal peptide TERM 744 992620 - 992645 + T 100 -13.3 -5.18726 | gap 1, opp_overlap 992612 GGAAGATCGACTTTG GCCGGGCTGCGT TCA GCG-AGCCCGGC TTTTTCTTGTGCCGC TERM 745 992722 - 992693 - T 77 -14.3 -2.87132 | gap 1 GCTGTTGGCGAGAGA TTCCGGGTTCGCGC TGC GCGCGC-CCCGGAA TGACTCGTGGAGGAG TERM 746 992794 - 992751 - T 84 -16 -3.05463 | gap 1, opp_overlap 992748 AGGCTCGCCACTCAA CGTCATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATCCCG CGGTGTTCGGGCAGG Rpal_0933 994285 - 992855 - | Homospermidine synthase TERM 747 993196 - 993224 + g 77 -13.9 -3.4072 | overlap 993170 CGTAGACCAGTACGC CGAGTTCGTCGAT GCC GTCGACGATCTCG TTCTCGTCGAGGATG TERM 748 994125 - 994166 + g 71 -9.5 -3.85864 | gap 1 ACGCCGTGCTTCTTG GCGAGTTCGCCATCCTCG TGCGGAT CGATGATGACGAAC-CGC TTCTTGTCGTACTCG Rpal_0934 994799 - 994395 - | GreA/GreB family elongation factor Rpal_0935 995480 - 995094 - | Endoribonuclease L-PSP Rpal_0936 995736 - 995578 - | hypothetical protein Rpal_0937 996334 - 995747 - | GCN5-related N-acetyltransferase TERM 749 996096 - 996048 - G 84 -16.9 -3.21099 | gap 3, overlap 996049 TCGCGGCAGGACGAA TCGACGGCGAGGGGGCCGAGCACG AGTG CG-GCCCGGCCCCCT-GC-GTCAA CGTGCCAGAGCCGCA TERM 750 996098 - 996049 - G 77 -16.4 -2.52516 | overlap 996048 CGCGGCAGGACGAAT CGACGGCG-AGGGGGCCGAGCACG AGTG CG-GCCCGGCCCCCTGCGTCAACG TGCCAGAGCCGCACC TERM 751 996406 - 996431 + r 81 -10.3 -4.19678 | CTTCACATGTGACAG GGAGAGGCCGG CAAG CCGGCCTCGAC TTTATTGACGTCTCC Rpal_0938 997619 - 996477 - | Ornithine decarboxylase TERM 752 997691 - 997658 - R 70 -11.7 -3.14211 | gap 1 ACGGGCGCTTACCAA CGATGGCGCTG-ATCC GAC GGCTTCAGCGCCGTCG CGCGATGGAGGCGCG Rpal_0939 998543 - 998283 - | putative exported protein of unknown function Rpal_0940 998752 - 1000842 + | Peptidyl-dipeptidase Dcp Rpal_0941 1000847 - 1001500 + | protein of unknown function DUF1007 Rpal_0942 1001656 - 1002810 + | high-affinity nickel-transporter TERM 753 1002826 - 1002842 + F 70 -7.9 -4.07568 | opp_overlap 1002814 1002826 1002827, overlap 1002820 1002827 1002832 1002834 CCAGCAGCCTGCAAA TCTGCGC TTT GCGCGGG TTTTGGCAAAACCCC TERM 754 1003811 - 1003797 - g 74 -5.6 -4.45083 | overlap 1003801 CTTACACTGACAAAA CCATCG AGG CGCTGG CCCGCAAGGGCGTGC Rpal_0943 1002986 - 1004023 + | Ferrochelatase Rpal_0944 1004180 - 1005175 + | band 7 protein Rpal_0945 1005192 - 1005641 + | protein of unknown function DUF107 Rpal_0946 1006605 - 1005745 - | transcriptional regulator, AraC family TERM 755 1005967 - 1005999 + g 70 -10.6 -3.53012 | ATAGTCGCCCCCGGC GATCTCGATGCGCT CGACC GGCGGATCGAGGTC TTTGCCGCCCGGCGC TERM 756 1006871 - 1006901 + r 73 -3.2 -4.67982 | gap 1, opp_overlap 1006866, overlap 1006874 1006875 1006890 GGGTATCGAACCCAG GCATGG-CGCGGG GAAGAG CCTGCGACCGTCC TTTTGTTCGGTCGAG Rpal_0947 1007968 - 1006955 - | KpsF/GutQ family protein TERM 757 1009641 - 1009668 + G 70 -13.4 -3.05463 | TCACCCGCACCTATA CGGCCGAGGTCG ACCA CGACTTCCGCCG TTGGCTGACGGCGAT Rpal_0948 1008173 - 1009888 + | hypothetical protein Rpal_0949 1010001 - 1011017 + | putative membrane protein of unknown function Rpal_0950 1011858 - 1011007 - | binding-protein-dependent transport systems inner membrane component Rpal_0951 1012762 - 1011968 - | ABC transporter related TERM 758 1012429 - 1012458 + g 71 -12.8 -3.23274 | opp_overlap 1012448 CTTCGGCGTCCGCCT TGGCTGCGCCGC GAAACA GCGGCCCGGCCA TTACATTGTGCAGCA TERM 759 1012559 - 1012508 - G 74 -12.2 -3.53012 | gap 1, overlap 1012490 1012514 1012515 CGCGTCCTGCTGAAA CACGAAG-CCGACGCGGCGATCGAC GCC GTCGACCGGCGCGTCGAACAAGGTG ACCTTGCCCGCCTGC TERM 760 1012552 - 1012514 - G 87 -17.4 -3.45571 | overlap 1012490 1012508 1012515 CTGCTGAAACACGAA GCCGACGCGGCGATCGAC GCC GTCGACCGGCGCGTCGAA CAAGGTGACCTTGCC TERM 761 1012551 - 1012515 - G 100 -20.9 -2.67021 | overlap 1012490 1012514 1012508 TGCTGAAACACGAAG CCGACGCGGCGATCGAC GCC GTCGACCGGCGCGTCGA ACAAGGTGACCTTGC Rpal_0952 1014009 - 1013011 - | putative substrate-binding component of ABC transporter TERM 762 1014132 - 1014163 + r 71 -9.2 -3.72576 | overlap 1014133 CTGCAGCGTCGCGGA ACCGCTCAGCCGCG CCGA CGCGGCCGGTCGGC TTTCATCCGCCGGAA TERM 763 1014133 - 1014162 + r 70 -12.7 -2.83403 | overlap 1014132 TGCAGCGTCGCGGAA CCGCTCAGCCGCG CCGA CGCGGCCGGTCGG CTTTCATCCGCCGGA Rpal_0953 1014409 - 1014137 - | hypothetical protein TERM 764 1015007 - 1014996 - g 81 -3.6 -4.99043 | CCCGCAGAAAGAAAA CCGC GCGA GCGA GCCGTTCTTCACGGT Rpal_0954 1014577 - 1016085 + | diguanylate cyclase Rpal_0955 1016991 - 1016116 - | UTP-glucose-1-phosphate uridylyltransferase Rpal_0956 1018059 - 1017115 - | alpha/beta hydrolase fold Rpal_0957 1018280 - 1018756 + | heat shock protein Hsp20 TERM 765 1018771 - 1018738 - T 80 -16.7 -2.5474 | gap 1, opp_overlap 1018736 1018735, overlap 1018744 GGTCACCGACAACAC CGAGAAGGCGGCCGCG TAA CGC-GCCGCCCGCTCG CGAACTTTCTTTCGC TERM 766 1018765 - 1018744 - T 79 -13.7 -3.43961 | gap 1, opp_overlap 1018736 1018735, overlap 1018738 CGACAACACCGAGAA GGCGGCCGCG TAA CGC-GCCGCC CGCTCGCGAACTTTC TERM 767 1018836 - 1018806 - T 93 -20.5 -3.06501 | gap 1, opp_overlap 1018809, overlap 1018809 TAGACCCCTAGCCAA GC-AGGCGCCCCGG GCAA CCGGGGCGCCTTGC TGTTGGGAATATCAT TERM 768 1018832 - 1018809 - T 91 -21 -2.75183 | opp_overlap 1018809, overlap 1018806 ACCCCTAGCCAAGCA GGCGCCCCGG GCAA CCGGGGCGCC TTGCTGTTGGGAATA TERM 769 1018809 - 1018832 + T 95 -21 -3.36749 | opp_overlap 1018809 1018806 ACCCCTAGCCAAGCA GGCGCCCCGG GCAA CCGGGGCGCC TTGCTGTTGGGAATA Rpal_0958 1019674 - 1018898 - | hypothetical protein TERM 770 1021559 - 1021503 - g 70 -6.5 -4.24342 | gap 2, overlap 1021507 TTCCGGACGAAGAAA TCAAGGCGCAGCTCGCCGCCAGCCAGC CCTAT GCCGACTGGCTGC-ATC-GCACCCAGA TCGTGCTGGAAGAGC TERM 771 1022232 - 1022274 + G 95 -18.4 -3.53012 | GTCTGGTGATCGAGT CCGGCGAGCCGCGCGAAGTG CAT CACTTCGCCTGCCTGGCCGG TTTCGGCGCCGAAGC TERM 772 1024055 - 1024036 - g 71 -9.2 -3.78034 | GATCGAGATCAACAA CACCGACC GCTC GGCCGGCG CGATGCTGTCCGGCA Rpal_0959 1020134 - 1024861 + | Glutamate synthase (ferredoxin) TERM 773 1024932 - 1024877 - f 91 -12 -4.36914 | GCCCTCGTCACAAAA CGGTCCGC-CACCCTGAGACGCCGG-TG TTAC CAGCCGGCCTCGCAGGGTGAGC-G-CCG CGGGGACAGCAACAG TERM 774 1026410 - 1026455 + G 74 -2.4 -4.72272 | gap 2, overlap 1026411 1026412 CCAGTCCCTGGTCGT GTGGGCGATCCGCGAAGGGCGC CTCT GCGCCCAG-GCG-ATCGACCGG TTTTTGATGGGCGCG Rpal_0960 1025034 - 1026488 + | glutamate synthase, NADH/NADPH, small subunit TERM 775 1026754 - 1026714 - f 78 -14.5 -3.05816 | overlap 1026702 CTACCCTCCATGGAA GGTGAGCAGGCCGCCGCCG AGC CGGCAGCGGCTGGCGCACG GCACGCGCGAATCTT Rpal_0961 1026846 - 1027250 + | protein of unknown function DUF559 Rpal_0962 1029184 - 1027700 - | hypothetical protein TERM 776 1030190 - 1030135 - R 93 -18.2 -3.29511 | gap 1, opp_overlap 1030103, overlap 1030105 CTCAGGGCGGCAGAA CGCTTCGGGGTTCCGGGTTCGCGTAGC TGT GCTACGCGC-CCCGGAACGACGGTGCG GTGGGGGCGAGGAAC Rpal_0963 1031000 - 1030224 - | short-chain dehydrogenase/reductase SDR TERM 777 1030347 - 1030370 + g 73 -6 -4.41609 | gap 1, overlap 1030348 1030349 GTCGCCGTAGCGGTG TA-GCGCGGTG CGA CGTCGCGCGTA TTTCTGTTTGTGCTC Rpal_0964 1031140 - 1031874 + | short-chain dehydrogenase/reductase SDR TERM 778 1031904 - 1031940 + T 71 -13.2 -3.05384 | gap 2, overlap 1031904 CGTTGCGGTCATTGC GA-T-GAGGTGCGCGGGA TGG TCCCGCGCATCTCGAATC TTGCGTCAGCGGAAG TERM 779 1031904 - 1031938 + T 71 -12.8 -3.08679 | overlap 1031904 CGTTGCGGTCATTGC GATGAGGTGCGCGGGA TGG TCCCGCGCATCTCGAA TCTTGCGTCAGCGGA TERM 780 1031999 - 1031967 - T 76 -10.3 -3.84639 | opp_overlap 1031967 GAAGATCGAGAAGAA GCCCGACGCGCTCGG CGG CGGGGCGCGGCGGCC TTGTTGCTGCGGCGG TERM 781 1031967 - 1031999 + T 81 -12.5 -3.71848 | opp_overlap 1031967 GAAGATCGAGAAGAA GCCCGACGCGCTCGG CGG CGGGGCGCGGCGGCC TTGTTGCTGCGGCGG Rpal_0965 1033631 - 1031946 - | protein of unknown function DUF459 TERM 782 1032429 - 1032374 - G 86 -16.7 -3.55304 | gap 1, opp_overlap 1032407 1032409, overlap 1032370 1032377 ACACCGAAGAAGCAA CCAGCGGCAGGATCGGACCGGCGGCG GGACG CGGCGCCGGTCCGG-CCGGCGGCTTG GCGGCCGTGTCGGGC TERM 783 1032426 - 1032377 - G 82 -17 -2.89971 | gap 1, opp_overlap 1032407 1032409, overlap 1032370 1032374 CCGAAGAAGCAACCA GCGGCAGGATCGGACCGGCGGCG GGACG CGGCGCCGGTCCGG-CCGGCGGC TTGGCGGCCGTGTCG TERM 784 1032409 - 1032449 + g 76 -15.4 -2.88822 | gap 2, opp_overlap 1032377 1032374, overlap 1032407 GCGGCGGGACGCGGC GCCG-GTCCGGC-CGGCGGC TTG GCGGCCGTGTCGGGCGCGGC TGGTTCTGTCGGCAG Rpal_0966 1034695 - 1033778 - | dihydrodipicolinate synthase TERM 785 1034744 - 1034763 + r 71 -12.8 -3.08133 | opp_overlap 1034744 AGCTGCAACAAAAAA CCCCGTCG AAAC CGGCGGGG TTGGGTGCATGCGTG TERM 786 1034763 - 1034744 - R 100 -10.6 -5.45652 | opp_overlap 1034744 AGCTGCAACAAAAAA CCCCGTCG AAAC CGGCGGGG TTGGGTGCATGCGTG Rpal_0967 1035106 - 1034963 - | hypothetical protein Rpal_0968 1036615 - 1035230 - | lytic murein transglycosylase Rpal_0969 1036790 - 1037446 + | Lysine exporter protein (LYSE/YGGA) Rpal_0970 1038215 - 1037463 - | protein of unknown function DUF81 Rpal_0972 1038757 - 1039341 + | transcriptional regulator, TetR family Rpal_0973 1040139 - 1039357 - | histidinol-phosphate phosphatase TERM 787 1040565 - 1040590 + r 100 -20.5 -5.79595 | TTCCTCCCTAGACTT GGGCCGCTTGC CATC GCAAGCGGCCC TTTTTTCTTTTCGGA TERM 788 1040785 - 1040797 + r 100 -4.7 -5.41143 | opp_overlap 1040783 ACGCCGTCCAGAAGG CCGTG GAG CCCGG TTTTTTTAAGAGGTG Rpal_0974 1041008 - 1040838 - | Flp/Fap pilin component Rpal_0975 1042046 - 1041159 - | N-formylglutamate amidohydrolase Rpal_0976 1042357 - 1042716 + | response regulator receiver protein Rpal_0977 1043108 - 1043233 + | hypothetical protein Rpal_0978 1043527 - 1043378 - | hypothetical protein TERM 789 1043685 - 1043634 - R 100 -15.8 -4.26076 | gap 1, overlap 1043635 GCATCTGCATTAAAA TTGACCGGAGGGCGGCGGGGCGC GGTCTAG GCGCCCCGCCGTTC-CCGATCAG CCGTGCAGCTTGATG TERM 790 1043684 - 1043635 - R 93 -19.3 -3.15324 | gap 1, overlap 1043634 CATCTGCATTAAAAT TGACCGGAGGGCGGCGGGGCGC GGTCTAG GCGCCCCGCCGTTC-CCGATCA GCCGTGCAGCTTGAT Rpal_0979 1044281 - 1043682 - | flavoprotein WrbA Rpal_0980 1045145 - 1044447 - | Pirin domain protein Rpal_0981 1045278 - 1046201 + | transcriptional regulator, LysR family Rpal_0982 1047049 - 1046216 - | hypothetical protein TERM 791 1046342 - 1046354 + g 73 -6.2 -4.32402 | overlap 1046330 1046332 GAAGCGGCGCAGGCC GGGC TGCGC GCCC TTGTTTTCCTTCGGC TERM 792 1046881 - 1046853 - G 70 -11 -3.61398 | GGCGTCCGCCAATAA GTCTTCCAGCCG GGTTG CAGCTGGAAGGC AATGCCACCCAGCAG Rpal_0983 1047184 - 1047837 + | protein of unknown function DUF179 Rpal_0984 1050938 - 1048059 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpal_0985 1052059 - 1051061 - | NAD(P)H quinone oxidoreductase, PIG3 family TERM 793 1051487 - 1051510 + g 73 -9.6 -3.96148 | gap 1 GATGGCGCGGCTGGC GCCGA-GCTTG AGG CAGGCGTCGGC TTTGTCCTGCGAGCC Rpal_0986 1052173 - 1052364 + | protein of unknown function DUF1192 TERM 794 1052562 - 1052583 + F 100 -11.5 -5.05782 | opp_overlap 1052564, overlap 1052564 CTGTTATCAACTTAA AAGCCGCCG GAAA CGGCGGCTC TTTTTTGGCCTCGGT TERM 795 1052581 - 1052564 - f 100 -14.1 -4.30014 | opp_overlap 1052562 1052564 GTTATCAACTTAAAA GCCGCCG GAAA CGGCGGC TCTTTTTTGGCCTCG TERM 796 1052564 - 1052581 + F 93 -14.1 -4.15748 | opp_overlap 1052564, overlap 1052562 GTTATCAACTTAAAA GCCGCCG GAAA CGGCGGC TCTTTTTTGGCCTCG Rpal_0987 1052785 - 1053294 + | protein of unknown function DUF1465 TERM 797 1053371 - 1053337 - T 80 -5.5 -4.81212 | opp_overlap 1053338, overlap 1053338 TGGACCACAATAAAA GTGGCTGTGGCCGGG CTCGC CCCGGCCATTGGCAT TTTTGGGGGACCGGC TERM 798 1053338 - 1053370 + T 95 -11.2 -4.56597 | opp_overlap 1053338 1053337 GGACCACAATAAAAG TGGCTGTGGCCGGG CTCGC CCCGGCCATTGGCA TTTTTGGGGGACCGG TERM 799 1053431 - 1053464 + T 86 -16.7 -3.12327 | opp_overlap 1053438, overlap 1053438 GATTTGATCTGCCAA CGCAAAACGCCCCGC GCGA GCGGGGCGTTTGTCG TATTGGGTCTCGAAA TERM 800 1053438 - 1053457 + T 100 -16.4 -4.06786 | opp_overlap 1053438, overlap 1053431 TCTGCCAACGCAAAA CGCCCCGC GCGA GCGGGGCG TTTGTCGTATTGGGT TERM 801 1053457 - 1053438 - T 100 -16.4 -4.27316 | opp_overlap 1053431 1053438 TCTGCCAACGCAAAA CGCCCCGC GCGA GCGGGGCG TTTGTCGTATTGGGT TERM 802 1053515 - 1053504 - T 70 -7.2 -4.08945 | AGCAGCCGGCGAAAA GCCG GCGC CGGC TCAATCCTTCTTGAG Rpal_0988 1053743 - 1053516 - | ribosomal protein L31 Rpal_0989 1053941 - 1055845 + | lipid A ABC exporter family, fused ATPase and inner membrane subunits Rpal_0990 1056435 - 1055989 - | GCN5-related N-acetyltransferase Rpal_0991 1057597 - 1056572 - | OmpA/MotB domain protein Rpal_0992 1058616 - 1057597 - | hypothetical protein Rpal_0993 1058796 - 1059623 + | protein of unknown function DUF1295 Rpal_0994 1059620 - 1060645 + | Cyclopropane-fatty-acyl-phospholipid synthase Rpal_0995 1060928 - 1061122 + | hypothetical protein Rpal_0996 1061207 - 1061401 + | hypothetical protein TERM 803 1061453 - 1061483 + T 100 -19 -4.91084 | opp_overlap 1061448 1061447 ACTTGAAAATTCGAA GGCCGGCACCTGCG CCC TGCAGCTGCCGGCC TTTTCTTATTCGCTG Rpal_0997 1061708 - 1061499 - | transcriptional regulator, XRE family Rpal_0998 1062287 - 1061712 - | hypothetical protein TERM 804 1062336 - 1062320 - H 71 -8.1 -3.83502 | opp_overlap 1062320, overlap 1062331 1062332 TATTTCGAGATGAAA TTATCGT AAA ACGATAA TTTATCATCGTCAAG TERM 805 1062320 - 1062336 + H 73 -8.1 -3.99324 | opp_overlap 1062320 1062331 1062332 TATTTCGAGATGAAA TTATCGT AAA ACGATAA TTTATCATCGTCAAG Rpal_0999 1062366 - 1062944 + | hypothetical protein Rpal_1000 1063770 - 1063168 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rpal_1001 1065305 - 1063767 - | UbiD family decarboxylase Rpal_1002 1065421 - 1065966 + | hypothetical protein TERM 806 1066120 - 1066064 - g 83 -14.3 -3.84246 | overlap 1066065 1066109 GTTTCAACGACGAAA CCAACGCGCGCAACTTCCCGGGGCTGA ACT TCAGCCGCGAGGAGATGCGTGAGTCGA TCGCGCACGCGCATC TERM 807 1066119 - 1066065 - g 76 -15.6 -2.90227 | overlap 1066064 1066109 TTTCAACGACGAAAC CAACGCGCGCAACTTCCCGGGGCTGA ACT TCAGCCGCGAGGAGATGCGTGAGTCG ATCGCGCACGCGCAT Rpal_1003 1065970 - 1066947 + | peptidase U32 TERM 808 1066934 - 1066981 + F 100 -12 -4.56597 | gap 1, opp_overlap 1066935 1066937, overlap 1066935 1066937 CCGGCGCCTACAAGA AGACTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAGTGA TTTTTCGCGAACCAC TERM 809 1066935 - 1066980 + F 84 -15.5 -3.33744 | gap 1, opp_overlap 1066935 1066937, overlap 1066934 1066937 CGGCGCCTACAAGAA GACTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAGTG ATTTTTCGCGAACCA TERM 810 1066980 - 1066935 - f 76 -11.1 -3.78934 | gap 1, opp_overlap 1066935 1066934 1066937, overlap 1066937 CGGCGCCTACAAGAA GACTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAGTG ATTTTTCGCGAACCA TERM 811 1066937 - 1066978 + F 91 -18.1 -3.23708 | gap 1, opp_overlap 1066935 1066937, overlap 1066935 1066934 GCGCCTACAAGAAGA CTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAG TGATTTTTCGCGAAC TERM 812 1066978 - 1066937 - f 79 -13.7 -3.4811 | gap 1, opp_overlap 1066937 1066935 1066934, overlap 1066935 GCGCCTACAAGAAGA CTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAG TGATTTTTCGCGAAC Rpal_1004 1067016 - 1067936 + | peptidase U32 TERM 813 1068010 - 1067980 - T 72 -7.5 -4.14627 | gap 1 TCTCTACACAAACAA CCGTCACCCTCCGC GCAA GCGGAGGGCC-CAG TACGGCCGTGCGCTG Rpal_1005 1069654 - 1068350 - | dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein TERM 814 1070192 - 1070209 + G 77 -9.9 -3.96148 | GAACGCGCGCTCGCC GTCGATG ACGT CATCGAC TTTCTGCTCGCCCCG Rpal_1006 1069736 - 1070308 + | transcriptional regulator, TetR family Rpal_1007 1071125 - 1070337 - | Inositol-phosphate phosphatase Rpal_1008 1072321 - 1071230 - | Sel1 domain protein repeat-containing protein TERM 815 1072161 - 1072193 + g 72 -8.9 -4.11216 | GCCTCGGTGGCGGGT GCCTTGGCCGGGGCC GGC GGCCTGGGCTTCGGC TTTTCCGGCTCCAGC Rpal_1009 1072997 - 1072338 - | thiamine monophosphate synthase Rpal_1010 1074037 - 1073003 - | Fructose-bisphosphate aldolase TERM 816 1073273 - 1073255 - G 71 -12.4 -3.25823 | GCCGCCGGACAGGAA GGCGATGC CCG GCACCGCC GACGGCACGCAGGCC Rpal_1011 1074415 - 1074092 - | transcriptional modulator of MazE/toxin, MazF TERM 817 1074409 - 1074386 - G 73 -5.9 -4.37886 | opp_overlap 1074386 1074387, overlap 1074387 GTAGTCTCCAGAAAA CGCGACGGT GACCAG ATCGCCGCG CTTCATGCTTTCCAA Rpal_1012 1074696 - 1074412 - | hypothetical protein Rpal_1013 1075991 - 1074795 - | Phosphoglycerate kinase TERM 818 1075435 - 1075449 + g 72 -11.4 -3.61398 | ATCACCGGCTTCACC GGCGCT TCC AGCGCC TTGTTCAGCGCGACG Rpal_1014 1077220 - 1076213 - | glyceraldehyde-3-phosphate dehydrogenase, type I Rpal_1015 1079421 - 1077436 - | transketolase Rpal_1016 1079749 - 1080093 + | hypothetical protein Rpal_1017 1080090 - 1080500 + | protein of unknown function DUF710 Rpal_1018 1081876 - 1080635 - | (Uracil-5)-methyltransferase Rpal_1019 1083347 - 1081923 - | MATE efflux family protein Rpal_1020 1084150 - 1083410 - | hemolysin A TERM 819 1083563 - 1083593 + g 86 -17.6 -3.14132 | GGCGTCGCGGACGAT GCCGCGCTTCGAGG GCG CCTCGAACTGCGGC TTGATCAGCGCCAGC Rpal_1021 1084716 - 1084153 - | nucleoside 2-deoxyribosyltransferase TERM 820 1084758 - 1084738 - R 71 -14 -2.64155 | overlap 1084735 1084734 GTGGGTGCAAATTCA CCCTCCCC TGGAG GGGGAGGG TCGCTCGCGGAGCGA Rpal_1022 1086864 - 1084939 - | deoxyxylulose-5-phosphate synthase TERM 821 1087012 - 1086975 - R 76 -9.3 -3.9712 | gap 1, opp_overlap 1087009 CTACGTCAGGAGAAA TCAACGATC-GAAGCG TGATGTG CGCTCCCGATCGTCGA AGTGACCTCGATCAC Rpal_1023 1087530 - 1087279 - | exodeoxyribonuclease VII, small subunit TERM 822 1087485 - 1087498 + g 75 -4.5 -4.62783 | GTTCCTCGAGGGCGC GCTCG AAGC TGAGC TTTTTCACATCGGTG TERM 823 1087541 - 1087572 + r 72 -3.7 -4.61824 | overlap 1087541 1087543 1087545 GCCATTTCGCATTCC CAGCTGC-ACCGCGC GGGG GCGCGGCAGCA-TTG TTTTGGTTGTTGTTC TERM 824 1087545 - 1087569 + r 76 -7.8 -4.38092 | gap 1, overlap 1087541 1087543 1087541 TTTCGCATTCCCAGC TGC-ACCGCGC GGGG GCGCGGCAGCA TTGTTTTGGTTGTTG Rpal_1024 1088542 - 1087613 - | histone deacetylase superfamily Rpal_1025 1090330 - 1088648 - | 5'-Nucleotidase domain protein TERM 825 1089244 - 1089271 + g 82 -12.6 -3.96148 | CGGTCACCGAGCCGG CTGGCCGCGCCG CGAT CGGGCCGGCCAG TTTGTCGTAGGCGGC Rpal_1026 1090550 - 1091026 + | conserved hypothetical protein; putative signal peptide TERM 826 1091071 - 1091023 - T 83 -7.4 -4.58395 | gap 2, opp_overlap 1091023 1091027, overlap 1091027 1091030 CGCACCGGGGAAAAA GTAATCAGCTCGGCTGCGGCACCC GGC GGGTGCCGCA-CAG-GCTCATGCC TTCTTCCGCTGGAAG TERM 827 1091067 - 1091027 - T 76 -11.2 -3.80855 | gap 2, opp_overlap 1091023 1091027, overlap 1091023 1091030 CCGGGGAAAAAGTAA TCAGCTCGGCTGCGGCACCC GGC GGGTGCCGCA-CAG-GCTCA TGCCTTCTTCCGCTG TERM 828 1091064 - 1091030 - T 71 -12.9 -2.9838 | gap 2, opp_overlap 1091027 1091023, overlap 1091027 1091023 GGGAAAAAGTAATCA GCTCGGCTGCGGCACCC GGC GGGTGCCGCA-CAG-GC TCATGCCTTCTTCCG Rpal_1027 1091859 - 1091065 - | Enoyl-CoA hydratase/isomerase TERM 829 1092003 - 1091981 - R 100 -19.2 -4.83243 | opp_overlap 1091977 1091976 TGCACACAAAATAAA GGGTGGCTGC GAC GCAGCCACCC CGGAGTTCTTCGTAA Rpal_1028 1093814 - 1092033 - | acyl-CoA dehydrogenase domain protein TERM 830 1092954 - 1092966 + g 70 -2.6 -4.63932 | overlap 1092942 CATCGTGAACATGCA CTGC ATGCC GCGG TTTTCTTCGCCGATC TERM 831 1093885 - 1093933 + H 75 -11.6 -3.57561 | CCTCAACCGTCCGTC GCGTCGCGC-CGGCTCTGCAGCCG GAC CGGCCACAC-GCCGCGCACGACGC TTTCGGCGGTTGAAA TERM 832 1094959 - 1094941 - g 85 -7.4 -4.72007 | CGCGAGCAAAATAAA GTTTCGCG ATC CGAGAAAC AAGAAAGTCCGGCGA TERM 833 1094979 - 1094966 - g 73 -3.7 -4.63048 | opp_overlap 1094966, overlap 1094962 CCGAGAAACAAGAAA GTCCG GCGA CGGCC TTTGCAATGGCGGAC Rpal_1029 1094206 - 1096179 + | integrase family protein TERM 834 1096679 - 1096648 - g 71 -12.2 -3.26471 | gap 1 CTACCTGGACACCAA GTTCGCCCGGCGGCC CGC GGTCGCCGG-CGAGC CGGCTCGGGTCGTCG Rpal_1030 1096397 - 1097671 + | integrase family protein Rpal_1031 1097689 - 1098066 + | hypothetical protein TERM 835 1098091 - 1098106 + G 85 -10.4 -4.25104 | TCTCGAAGCCTTCAT GCCGGA TTTT TCCGGC TTTTCGTCGCCGGGC Rpal_1032 1098059 - 1098727 + | hypothetical protein Rpal_1033 1098751 - 1099458 + | hypothetical protein Rpal_1034 1099505 - 1100218 + | hypothetical protein Rpal_1035 1100215 - 1101009 + | hypothetical protein Rpal_1036 1101009 - 1101302 + | hypothetical protein TERM 836 1101654 - 1101673 + G 71 -2.8 -4.67697 | gap 1, overlap 1101656 GGTCGGGCCCGGTTC GA-CGGGCT ATG AGCGCGATC TTTATTCTTTTCCCG Rpal_1037 1101523 - 1102431 + | hypothetical protein Rpal_1038 1103274 - 1102411 - | IstB domain protein ATP-binding protein TERM 837 1102906 - 1102885 - G 75 -13.7 -3.30441 | gap 1 GACCACGTTGTAGAA CCGGGCTCGG GCG CCG-GCCCGG ATGCAGTTCCGGGCG Rpal_1039 1104764 - 1103274 - | Integrase catalytic region TERM 838 1104312 - 1104288 - G 73 -10.7 -3.71848 | GGCCCGCACGAACAA CATCCGGCTGT GGC AGAGCCGGACG TGGGCGACCTTCACG Rpal_1040 1106854 - 1105025 - | multicopper oxidase type 3 TERM 839 1108422 - 1108432 + G 75 -3.2 -4.77173 | GGCTATCTGTTTAGC GTTG GCT CGAC TTTCTTTTATGGCGG TERM 840 1108680 - 1108666 - g 71 -2.8 -4.63932 | opp_overlap 1108653, overlap 1108653 GACCGGGCAACAAAA TCCC GGTTGAT GGGA CCGTGCTAGAAGGAT TERM 841 1108778 - 1108751 - g 71 -2.8 -4.68593 | gap 2, overlap 1108753 GCCAGTAGTCAAAAA GGTCG-GC-GAT GCCGTG ATCGGCGCGACC ATCAACAAGAGCGGT Rpal_1042 1107714 - 1110155 + | copper-translocating P-type ATPase Rpal_1044 1111556 - 1110610 - | Transposase and inactivated derivatives-like protein TERM 842 1110907 - 1110936 + g 80 -9.3 -4.258 | overlap 1110903 CAGTGTGGGAACGAG GATGCTTTCGACG TAAG CTTCGAGAGCGTC TTTGTTGATCGGTCC TERM 843 1111195 - 1111210 + g 90 -2.4 -5.42259 | overlap 1111194 GGGACGGTTCTGCTC GGCGGC ATGC GCAGTC TTTTTTTGAAAGTGA Rpal_1045 1115313 - 1112164 - | heavy metal efflux pump, CzcA family TERM 844 1113700 - 1113690 - G 72 -8.2 -4.08216 | CGACGGTGGCGAAAA CGGC GAC GCCG ACCATGACGTAGCGC TERM 845 1113949 - 1113928 - G 70 -10.1 -3.66178 | GTCCTGAAGGGCAAA CACCGGCAG AAAG CTGACGGTG ATAATGAGCAGCGAG Rpal_1046 1116626 - 1115328 - | efflux transporter, RND family, MFP subunit TERM 846 1115402 - 1115420 + g 77 -8 -4.3953 | ACATCCCCTTGACGT CCTGCGGC CGG GCTGCCGG TTTGTTCTCGTTGGC Rpal_1047 1118127 - 1116652 - | outer membrane efflux protein TERM 847 1117165 - 1117201 + g 70 -10 -3.65812 | gap 1, overlap 1117183 GATAGCGTCCTTTCG CCCGGCCACCTGCCGGG CAAG CCCGGCCAGTT-CCGGG TTCTGTTCAACCGCC TERM 848 1117864 - 1117828 - G 81 -11.6 -3.90744 | gap 2, overlap 1117844 TCCGTTGGCAAAGAA CGCGC-GGCGCAA-GACA TCG CGCCATCGCGCCGGCGCG GGCACGAGCGGCAAC TERM 849 1118547 - 1118585 + r 71 -5.9 -4.37092 | overlap 1118540 TGTCGCGGCCGAGGT GTCGGTAATCTCTCGGT GCCGA ACGGAGAGGGGACCGGC TTTTGTCCAGGACGT Rpal_1048 1119114 - 1118653 - | protein of unknown function DUF411 Rpal_1049 1120195 - 1119323 - | H+transporting two-sector ATPase gamma subunit TERM 850 1119687 - 1119659 - G 72 -8.7 -4.05208 | overlap 1119656 1119679 1119680 ATCGAGAGGAAACAA GCGGCGGCGCTCG ACA CGAACGCCATGGC CGGGCCGCCACTGGC Rpal_1050 1121745 - 1120192 - | ATP synthase F1, alpha subunit TERM 851 1120765 - 1120809 + g 93 -9.2 -4.8622 | gap 2 GGCGCTGAGGTTGCC GGCGTCGGTCTCGGCGATCGGT AGC GCCG-TCAGCGAG-CCGCCGCC TTTTTCCTTGGACAG Rpal_1051 1122472 - 1121726 - | H+transporting two-sector ATPase B/B' subunit Rpal_1052 1122722 - 1122477 - | ATP synthase F0, C subunit Rpal_1053 1123417 - 1122719 - | ATP synthase F0, A subunit Rpal_1054 1123719 - 1123414 - | hypothetical protein Rpal_1055 1124033 - 1123716 - | F0F1-ATPase subunit Rpal_1056 1124449 - 1124030 - | alternate F1F0 ATPase, F1 subunit epsilon TERM 852 1124369 - 1124404 + g 78 -15.4 -3.14132 | opp_overlap 1124356, overlap 1124365 TATCCCGAAGCTGCC GGTGGCGTCTTCGGCG CGCA CGACGAGGACGCCGTC TTCCTCGACGACGAC Rpal_1057 1125870 - 1124446 - | ATP synthase F1, beta subunit TERM 853 1126303 - 1126289 - H 71 -8.6 -3.89346 | overlap 1126292 1126293 1126299 GCCCTACTTTAGAAA CAACGT CAA ACGTTG ACAGCAGCGCTATGA Rpal_1058 1126447 - 1126995 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_1059 1126992 - 1127630 + | protein of unknown function DUF1109 Rpal_1060 1127760 - 1127996 + | hypothetical protein Rpal_1062 1128648 - 1128911 + | putative exported protein of unknown function TERM 854 1128933 - 1128908 - T 100 -6.2 -5.41143 | CATGGGCGAAAAAAA GTAGTAACGC TCCCAG GCACTACTAC CGACTAGGCAAGCCG TERM 855 1129307 - 1129275 - T 74 -9.9 -3.68827 | gap 1, overlap 1129276 CATGCAGCAGGCAAA GCGTTCGGCGTTGC GGAAGT GCAACGCCGAT-GC GGCAAACAAGCAGGA Rpal_1064 1131289 - 1130069 - | putative membrane protein of unknown function TERM 856 1130176 - 1130190 + g 71 -2.8 -4.64861 | GTTTCGCCGTGGTAA TTGGCG CCT TGTCAA TTTGTTTTGACCAGG TERM 857 1130713 - 1130699 - G 77 -5.6 -4.68424 | overlap 1130702 GAATGGATTGAAAAA CCACCC CCC GGACGG ATATGAGGGGAGATT TERM 858 1131408 - 1131420 + H 74 -9.1 -3.92832 | opp_overlap 1131404 GTTCGACCCAACGGC CGCGA GCG TCGCG TTCTTTGCCGCATTT TERM 859 1133157 - 1133144 - H 74 -2.4 -4.87807 | overlap 1133135 1133148 GGAAGAGATGAAAAA GCAT CCTCAC ATGC AGCACGATGAGCCGA TERM 860 1133470 - 1133487 + H 85 -5.6 -5.08601 | ACGGGGTGGTGTTGA GCTTGA CTAGCA TCAAGC TTTTTCTTCAGCTGC Rpal_1066 1133573 - 1133953 + | putative exported protein of unknown function TERM 861 1134719 - 1134701 - g 71 -12.4 -3.29144 | opp_overlap 1134692 1134690 GCAGGCTCGCCAGAA TCGGCCGC AGC GCGACCGA GGCTGAGGATCTTGT Rpal_1068 1134574 - 1135125 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_1069 1135122 - 1135760 + | protein of unknown function DUF1109 Rpal_1070 1135900 - 1136130 + | hypothetical protein Rpal_1071 1136163 - 1136405 + | hypothetical protein TERM 862 1136450 - 1136406 - f 76 -11.3 -3.68798 | opp_overlap 1136410, overlap 1136402 1136399 1136409 GGCGAAAAGAAGTAA TCACCGGAGCACGGAGGCCGA ACG TCGACTTCCGCGCTCCGTTTG GCGTTTCAACCTGTT TERM 863 1136447 - 1136409 - f 87 -17.4 -2.93765 | opp_overlap 1136410, overlap 1136406 1136402 1136399 GAAAAGAAGTAATCA CCGGAGCACGGAGGCCGA ACG TCGACTTCCGCGCTCCGT TTGGCGTTTCAACCT TERM 864 1136410 - 1136446 + F 100 -18.7 -3.71649 | opp_overlap 1136409 1136406 1136402 1136399 AAAAGAAGTAATCAC CGGAGCACGGAGGCCGA ACG TCGACTTCCGCGCTCCG TTTGGCGTTTCAACC Rpal_1072 1136895 - 1139162 + | heavy metal translocating P-type ATPase Rpal_1073 1139184 - 1139429 + | hypothetical protein TERM 865 1139442 - 1139417 - T 72 -11.8 -3.28712 | opp_overlap 1139416 1139400, overlap 1139391 1139418 TCGCGCGCCGGAGAA GCGCTCGCCG TGATGC CGGCGAGCGA AGTTGTTGATCATCG TERM 866 1139441 - 1139418 - T 77 -15.3 -2.57132 | opp_overlap 1139416 1139400, overlap 1139391 1139417 CGCGCGCCGGAGAAG CGCTCGCCG TGATGC CGGCGAGCG AAGTTGTTGATCATC TERM 867 1139554 - 1139542 - T 76 -10.5 -3.84406 | CTGGTAGCAGAAGAA CCGCC CAA GGCGG ACTAAAGTCGGGAAT Rpal_1074 1140531 - 1139704 - | transposase IS4 family protein Rpal_1077 1143300 - 1142470 - | hypothetical protein TERM 868 1143684 - 1143701 + G 70 -10.5 -3.65812 | GATTCCCGGTGGAGC CGGCCGG CATC TCGGCCG TTATCTTGACCCACG Rpal_1078 1143527 - 1144891 + | beta-lactamase domain protein TERM 869 1144940 - 1144910 - T 84 -15.6 -3.27298 | opp_overlap 1144901 1144900 1144899 1144910 CCGCCGAAGGAGGAA GTGATCCGACGA TGTTAGT TCGTCGGATCAC TGCTTCACAATCATT TERM 870 1144910 - 1144940 + T 78 -15.6 -2.72839 | opp_overlap 1144910, overlap 1144901 1144900 1144899 CCGCCGAAGGAGGAA GTGATCCGACGA TGTTAGT TCGTCGGATCAC TGCTTCACAATCATT Rpal_1079 1145205 - 1144951 - | putative exported protein of unknown function Rpal_1080 1145535 - 1145864 + | putative exported protein of unknown function Rpal_1082 1147384 - 1147797 + | protein of unknown function DUF1622 Rpal_1083 1149566 - 1147782 - | hypothetical protein Rpal_1084 1149739 - 1150434 + | protein of unknown function DUF1520 Rpal_1085 1150461 - 1152569 + | Oxidoreductase FAD-binding domain protein Rpal_1086 1152571 - 1153266 + | hypothetical protein Rpal_1087 1153263 - 1154039 + | hypothetical protein Rpal_1088 1155670 - 1155293 - | hypothetical protein Rpal_1089 1155910 - 1156200 + | hypothetical protein Rpal_1090 1156204 - 1157655 + | outer membrane efflux protein Rpal_1091 1157668 - 1159050 + | multicopper oxidase type 3 Rpal_1092 1159047 - 1159544 + | blue (type 1) copper domain protein Rpal_1093 1159574 - 1159879 + | hypothetical protein Rpal_1094 1159954 - 1160619 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 871 1160754 - 1160732 - f 76 -6.2 -4.56597 | opp_overlap 1160732 TTCGGCGTGCAAAAA TTGGACGCCG ATA CGGGGTCAAA TTTGCGCACGATGAC Rpal_1095 1160849 - 1161877 + | transposase IS116/IS110/IS902 family protein Rpal_1096 1162681 - 1162499 - | hypothetical protein Rpal_1097 1163192 - 1164082 + | hypothetical protein Rpal_1098 1164063 - 1164425 + | hypothetical protein Rpal_1099 1164974 - 1166158 + | putative membrane protein of unknown function with acyltransferase family protein domain Rpal_1100 1166775 - 1166311 - | hypothetical protein TERM 872 1166397 - 1166407 + g 72 -8.2 -4.07868 | GCCCGCTTCCGAGAT CGCC GGC GGCG TTTATGTCGATATGC Rpal_1101 1167986 - 1166772 - | hypothetical protein Rpal_1102 1168858 - 1168088 - | hypothetical protein Rpal_1103 1169991 - 1169446 - | putative cytochrome c class I protein Rpal_1104 1171399 - 1170221 - | hypothetical protein TERM 873 1170414 - 1170402 - G 78 -10.5 -4.10552 | overlap 1170381 GCGCAGCAAAGGAAA GCCGG ACG CCGGC GCAATAGATTACGAG Rpal_1105 1171765 - 1171598 - | hypothetical protein TERM 874 1171771 - 1171785 + r 71 -11.4 -3.42256 | overlap 1171769 GCGCCTGCATGTTAA GCCTCC GAT GGAGGC TATTCTTCGGTCCGT Rpal_1106 1174284 - 1172683 - | filamentation induced by cAMP protein Fic TERM 875 1176684 - 1176703 + G 70 -10.6 -3.61715 | CCCGCAATTGCATCC GCGCCGGC GCCC GCGGGCGC TTCTTCACCACCGTC Rpal_1108 1176314 - 1177042 + | IstB domain protein ATP-binding protein TERM 876 1177516 - 1177556 + T 71 -9.5 -3.68222 | opp_overlap 1177510 1177506, overlap 1177515 GCGAAGCAATGACGG CCCAGTGTTCGCCGCCGCC GTC GGAGCCGGCGAACAGGGCG TTCTTGCGGTTCAGC Rpal_1111 1179303 - 1178947 - | IS66 Orf2 family protein Rpal_1112 1179749 - 1179300 - | transposase IS3/IS911 family protein TERM 877 1179350 - 1179381 + g 73 -13.6 -3.27994 | gap 1 CAACCGTCGCAGCAT CCGCGCCGCGG-CCG ACC CGGACCGCGACGCCG TTGATCTCCAGTTCG TERM 878 1179966 - 1179993 + r 70 -9.8 -3.57615 | gap 1, opp_overlap 1179966 1179964, overlap 1179968 CGGTTGCGATAAAGA TC-CGCGCGCCCG CCG CGAGTGCGCGTGA TTTGGGAAATGTTCG TERM 879 1179968 - 1179990 + r 70 -12.6 -2.91322 | opp_overlap 1179966 1179964, overlap 1179966 GTTGCGATAAAGATC CGCGCGCCCG CCG CGAGTGCGCG TGATTTGGGAAATGT Rpal_1114 1183502 - 1180059 - | TPR repeat-containing protein TERM 880 1182099 - 1182157 + g 84 -9.7 -4.46112 | gap 1, opp_overlap 1182110 GTCTTCTCGAGGATC TTGAGACG-ATATCGCGCGTTGGATTTC CGAT GAAATCCGACGTGCGAGATTCAACCCAA TTTCTTTCAATCCCA TERM 881 1182145 - 1182110 - G 73 -14.8 -2.85668 | opp_overlap 1182099 GATCTTGAGACGATA TCGCGCGTTGGATTTC CGAT GAAATCCGACGTGCGA GATTCAACCCAATTT Rpal_1116 1185056 - 1184889 - | hypothetical protein Rpal_1117 1185300 - 1185058 - | hypothetical protein Rpal_1118 1185577 - 1185251 - | hypothetical protein TERM 882 1185546 - 1185513 - GH 76 -6.5 -4.41348 | overlap 1185514 GGCCCGGCAAAGAAA GCCGGCAGGACTGAC GTCA GCTGGTCCCGCCGGT CGTCACGCTGCAGCA TERM 883 1185928 - 1185894 - g 72 -6.9 -4.18197 | overlap 1185895 ATGGCGGATCGAAAA CCGGCCACCAGGGGC AGAAA GCCTCCGGAGGGCGA AAAGAAGCAATTTCT Rpal_1119 1185879 - 1186073 + | hypothetical protein Rpal_1120 1186082 - 1186660 + | hypothetical protein Rpal_1121 1186657 - 1187427 + | hypothetical protein TERM 884 1187825 - 1187807 - g 71 -3.1 -4.62069 | opp_overlap 1187817 1187819 1187823 TCCGGACCCGAAAAA GGACATC GTGCT GATCTCC CGCACCGGGGCTCTG Rpal_1122 1187424 - 1187999 + | hypothetical protein Rpal_1123 1188010 - 1191543 + | hypothetical protein TERM 885 1195112 - 1195090 - g 78 -9.9 -4.07885 | gap 1, opp_overlap 1195090 GAGTTTCTCTGAAAA TCTCG-CCCG GTTT CGGGACGAGA TTGTGAAGGTGGCAC Rpal_1124 1191554 - 1195534 + | hypothetical protein TERM 886 1198054 - 1198026 - g 77 -13.9 -3.37487 | opp_overlap 1198047, overlap 1198016 1198024 CGACACGGTCAAACA TGTCCGCATCCAG GTG CTGGACGCGGAAA CCGACGCGCTTCTTT Rpal_1125 1195540 - 1198110 + | PglZ domain protein TERM 887 1198569 - 1198581 + G 70 -6.2 -4.18018 | CGACGAGGAGGGCAA GGGG AAAAA CCCC TTTTGGATCGAGAAG Rpal_1126 1198114 - 1200150 + | hypothetical protein Rpal_1127 1200150 - 1201118 + | hypothetical protein Rpal_1128 1201933 - 1201130 - | hypothetical protein Rpal_1129 1203074 - 1201926 - | hypothetical protein Rpal_1130 1203415 - 1203053 - | hypothetical protein Rpal_1131 1203986 - 1203420 - | hypothetical protein Rpal_1133 1204534 - 1204983 + | hypothetical protein Rpal_1134 1204986 - 1205711 + | protein of unknown function DUF159 Rpal_1135 1205849 - 1206736 + | hypothetical protein TERM 888 1206844 - 1206877 + G 77 -15.3 -3.01712 | gap 1, overlap 1206846 CTGATGCAGTTCGGG TC-GCCCTTCCGCGCC AAC GGCGCGGAGCGGCTGA TGTTCGACAAGACGG TERM 889 1206846 - 1206874 + G 85 -18.1 -2.73875 | overlap 1206844 GATGCAGTTCGGGTC GCCCTTCCGCGCC AAC GGCGCGGAGCGGC TGATGTTCGACAAGA Rpal_1136 1206736 - 1207035 + | hypothetical protein Rpal_1137 1207067 - 1207864 + | hypothetical protein TERM 890 1208718 - 1208688 - g 83 -4.6 -5.0133 | GACTCGCTCAAAAAA CGGGGCTACCGT TGGAATG ACGGCAGCGACG GCAGACCCAATTCCT TERM 891 1208833 - 1208846 + G 75 -9.5 -4.07885 | overlap 1208844 GCGTGCAGCGGCTTA CCGCG TTCA CGCGG TTTTCGAGCCGGGTC Rpal_1138 1208034 - 1208864 + | Exonuclease RNase T and DNA polymerase III Rpal_1139 1209818 - 1208874 - | hypothetical protein Rpal_1140 1210180 - 1211601 + | hypothetical protein Rpal_1141 1211795 - 1212379 + | hypothetical protein TERM 892 1212456 - 1212426 - g 75 -4.5 -4.63527 | gap 1, overlap 1212430 CGAGGATCTGAAAAA GGGACGCGCCGAGC TCGC GC-CGGCGCTACGC AAGTCGAAGGCCGCC TERM 893 1212537 - 1212568 + G 75 -9.6 -4.14472 | gap 1, overlap 1212537 CGGCCTGTGTCGGCG CC-TGTCGACCAT GACGCAG ATGGTCGACACGG TTTTCGAGATATTGC Rpal_1142 1212385 - 1213146 + | hypothetical protein Rpal_1143 1213672 - 1213175 - | hypothetical protein TERM 894 1214125 - 1214141 + r 74 -2.2 -4.8622 | opp_overlap 1214125 CCGTTCAGAAGATAG GCCTAT GTCAG AGAGGC TTTTTCATTCCCGGC Rpal_1145 1215051 - 1214422 - | hypothetical protein Rpal_1146 1215361 - 1215555 + | hypothetical protein TERM 895 1215627 - 1215672 + F 72 -13.9 -2.78384 | gap 1, opp_overlap 1215625 CACCGCCAGCCAAGC GGCCCGTCGCCCGTG-CCCGCG CAC CGCGGGGCATGGATGACAGACC TGTGCTGCCGGCGCC Rpal_1147 1215731 - 1216693 + | hypothetical protein Rpal_1148 1216690 - 1217358 + | hypothetical protein Rpal_1149 1217355 - 1217561 + | metallophosphoesterase Rpal_1150 1217551 - 1219122 + | ATPase associated with various cellular activities AAA_5 TERM 896 1219218 - 1219207 - f 85 -5.8 -5.00884 | ATGCTGTCGAAAAAA GGCT TCAG AGCC TCGGCGAACACTGAT Rpal_1152 1221959 - 1222960 + | NADH ubiquinone oxidoreductase 20 kDa subunit Rpal_1153 1222957 - 1224402 + | nickel-dependent hydrogenase large subunit Rpal_1154 1224638 - 1225750 + | hydrogenase (NiFe) small subunit HydA Rpal_1155 1225769 - 1227562 + | nickel-dependent hydrogenase large subunit Rpal_1156 1227579 - 1228307 + | Ni/Fe-hydrogenase, b-type cytochrome subunit Rpal_1157 1228435 - 1229022 + | hydrogenase expression/formation protein Rpal_1158 1229036 - 1229629 + | HupE/UreJ protein TERM 897 1229743 - 1229774 + G 78 -14.4 -3.53531 | TAGCGTCTCGACCAT GCTGATCGGCGAGG TCGT CCCCGGCGATCAGC TTCTGGTGTTCATCG Rpal_1159 1229651 - 1229953 + | hydrogenase assembly chaperone hypC/hupF Rpal_1160 1230174 - 1230575 + | hydrogenase-1 expression HyaE Rpal_1161 1230572 - 1231438 + | HupH hydrogenase expression protein Rpal_1162 1231435 - 1231647 + | Rubredoxin-type Fe(Cys)4 protein Rpal_1163 1231637 - 1232161 + | HupJ protein TERM 898 1232276 - 1232237 - g 71 -14.8 -2.62184 | TTCGGCTCGACATCA CCGCGCGCCGGCCGATCG GCAT CGGCCGGCTGGCGCAAGG CAAATCCGGCGAGAT Rpal_1164 1232158 - 1233267 + | hydrogenase expression/formation Rpal_1165 1233260 - 1233601 + | hydrogenase nickel insertion protein HypA Rpal_1166 1233601 - 1234557 + | hydrogenase accessory protein HypB TERM 899 1234931 - 1234942 + G 79 -7.2 -4.60797 | overlap 1234911 GACGATCTGTTCGAT CCGG CGAG CCGG TTTTATCTCTACCCG TERM 900 1235725 - 1235676 - g 75 -15.8 -2.78384 | gap 2, opp_overlap 1235658 1235692 TGCGCGCCGACGACA GCGT-CGC-GCGGGTGATCGACGG TGCA CCGTCATTCATCCGCCGCGCACGC GGCTTCACGCCGCGG TERM 901 1235825 - 1235800 - g 70 -2.4 -4.62069 | opp_overlap 1235812 CGCCTACTTGAAAAA CACCATCACG CTGACC CGCGGCGGCG AGGCGTTCGTGTCGC TERM 902 1236055 - 1236095 + G 86 -17.6 -3.03124 | gap 1 CCATGTCGCCTCGAT CGCGGCCGAGCA-CGGCAT CGAC ACGCCGCTGCTCGGCCTCG TATTCGACGGTCACG TERM 903 1236480 - 1236537 + G 70 -10.8 -3.54424 | gap 4, opp_overlap 1236469, overlap 1236470 1236536 AAATCCCGCGCGTGC TGGGCG-GCGGC--TGGGAGATCG-GCG CCGGCA CGCTCGATCTCTCGTCGCTGCTCGCCCA TTTGGCGACGTCGCG Rpal_1167 1234562 - 1236835 + | (NiFe) hydrogenase maturation protein HypF Rpal_1168 1236835 - 1237068 + | hydrogenase assembly chaperone hypC/hupF Rpal_1169 1237065 - 1238207 + | hydrogenase expression/formation protein HypD Rpal_1170 1238204 - 1239250 + | hydrogenase expression/formation protein HypE TERM 904 1240029 - 1240041 + G 86 -9.1 -4.62069 | ACCGGCGCCTATCAG GACCG CAT CGGTC TTTTTGAAGTGGCCG Rpal_1171 1239291 - 1240739 + | two component, sigma54 specific, transcriptional regulator, Fis family Rpal_1172 1240729 - 1242081 + | PAS/PAC sensor signal transduction histidine kinase Rpal_1173 1242187 - 1244574 + | PAS/PAC sensor hybrid histidine kinase Rpal_1174 1245389 - 1244598 - | transcriptional regulator, IclR family TERM 905 1246157 - 1246175 + G 72 -11.6 -3.54543 | GTGGGCCTATCTCGG CGCGGGCG AAC CGCCGGCG TTTCCGGAGATCGAT Rpal_1175 1245750 - 1247108 + | Phthalate 4,5-dioxygenase TERM 906 1247208 - 1247178 - g 71 -14 -2.82516 | GGTCCGAGGAGCAGA TCGATGCGGCGG CGCGCGT CCGCCGCATCGC CGAAGAGCAGGGGCT Rpal_1176 1247105 - 1248565 + | glutamine synthetase catalytic region Rpal_1177 1248612 - 1249784 + | Extracellular ligand-binding receptor Rpal_1178 1249996 - 1250862 + | inner-membrane translocator Rpal_1179 1250865 - 1251863 + | inner-membrane translocator Rpal_1180 1251860 - 1252624 + | ABC transporter related Rpal_1181 1252605 - 1253318 + | ABC transporter related Rpal_1182 1255872 - 1253332 - | response regulator receiver modulated GAF sensor protein TERM 907 1253815 - 1253786 - G 70 -13.5 -3.02043 | gap 1, opp_overlap 1253780, overlap 1253773 AATTGGCCCGGAATA CCGAGCCGGGCGAC GAC GCCGCCCGGCA-GG TAGTCGACTTCGCTC TERM 908 1255709 - 1255691 - G 79 -11 -3.90744 | opp_overlap 1255691 1255704 GTCTCGCCGAAATAA TCGGCGAG TAG CTCACCGA CCCGCGGAGTTTCGC TERM 909 1256795 - 1256771 - g 71 -12.8 -3.31792 | CGATGATGCCGACAA GCTGCGGCAG CGGGC CTGCCGCTGC AACGAGGCGATCAAG Rpal_1183 1256130 - 1256873 + | putative transcriptional regulator, Crp/Fnr family Rpal_1184 1257626 - 1256895 - | transcriptional regulator, Crp/Fnr family TERM 910 1257986 - 1258013 + G 70 -11.3 -3.53012 | opp_overlap 1257976, overlap 1257972 ACACAGCCGCGGCGC TCCGGCTCGAG CCGCAT CTCGATCCGGA TTTCCGCGAGCAGGA Rpal_1185 1257793 - 1258368 + | Phosphoglycerate mutase Rpal_1186 1258811 - 1259146 + | hypothetical protein TERM 911 1259153 - 1259136 - T 70 -9.8 -3.55622 | opp_overlap 1259136 1259150, overlap 1259148 GCGAAGTGTCGGAAA GCGGCG ACTGAA CGCCGC CACCGGCGCCTCCGC TERM 912 1259150 - 1259208 + T 81 -15.3 -3.01712 | gap 3, opp_overlap 1259136 1259148 1259186, overlap 1259136 1259186 AGCGGCGACTGAACG CCGC-CACCGGCGCCTCCGCGTCGCTGG CTTGAA CCAGC-A-GCGGTGGCGCCGGCGCGCCG TGTTACAGCGAGCGG Rpal_1187 1260356 - 1259211 - | acyl-CoA dehydrogenase domain protein Rpal_1188 1261604 - 1260735 - | alpha/beta hydrolase fold TERM 913 1261068 - 1261079 + g 75 -7.2 -4.30719 | GTGCAGCGCAAGGTC CGGC GTCA GCCG TTTGTTGTGGGCGCG Rpal_1189 1261803 - 1262231 + | transcriptional regulator, ArsR family Rpal_1190 1262625 - 1262245 - | Rhodanese domain protein TERM 914 1262769 - 1262811 + H 81 -15.4 -3.01712 | CGGAGGCGGGCATTG CGCGGCGCTCGTGCGGCCGC CAA GCTGGCGCACAAGTGCGGCG TGTTGGAAGGAGAAC Rpal_1191 1262834 - 1263448 + | Methyltransferase type 12 Rpal_1192 1263851 - 1263456 - | nitrogenase-associated protein Rpal_1193 1264455 - 1263865 - | molybdenum ABC transporter ATP-binding protein TERM 915 1265133 - 1265097 - g 71 -2.8 -4.59773 | overlap 1265113 1265114 CTGCACCCGTAAAAA CACGCCGGGTACCAAA CGGTT TGCGGTCGCCGCCGTG AAAGCCGGCGGCGCC TERM 916 1265148 - 1265187 + G 74 -15.1 -3.05384 | gap 1, opp_overlap 1265114 1265113, overlap 1265150 1265178 GAAAGCCGGCGGCGC CACCATGCATCGGCTCGG CCTGT CCGAGACGGTGC-TGGTG TTCGGTGAGCACCGC Rpal_1194 1264702 - 1265544 + | modD protein Rpal_1195 1267309 - 1265675 - | AMP-dependent synthetase and ligase TERM 917 1266560 - 1266544 - G 70 -11.5 -3.44051 | opp_overlap 1266543 1266541 GCCGCATCAGCACAA CGCAGCC GCC GGCCGCG ATCGTTGCATAGGAT Rpal_1196 1267553 - 1267759 + | hypothetical protein TERM 918 1267750 - 1267778 + F 89 -11 -4.32046 | gap 1, overlap 1267739 GGTGGCGCCGCCGCC CGCGCCGT-AAGC GCAT GCTGGACGGCGCG TTTGATTTTTCGAAG Rpal_1197 1267838 - 1268488 + | NUDIX hydrolase Rpal_1198 1268628 - 1269002 + | Extradiol ring-cleavage dioxygenase LigAB LigA subunit Rpal_1199 1269018 - 1269875 + | Protocatechuate 4,5-dioxygenase Rpal_1200 1270902 - 1270012 - | transcriptional regulator, AraC family Rpal_1201 1271054 - 1272241 + | cytochrome P450 TERM 919 1272264 - 1272294 + T 100 -17.6 -4.27316 | opp_overlap 1272255 GCGAAAGTCCGATTG GAGCGGCCGTGGTC TCA GGTCACGGCTGCTC TTTTAGGTTCGACGA Rpal_1202 1274224 - 1272278 - | beta-lactamase domain protein TERM 920 1272644 - 1272684 + g 78 -6.1 -4.62336 | gap 1, overlap 1272645 TTGCGAGGTCTTCAG CGCCGACAGCGTCTCG CGCGGCATTC CGGGGCGC-GTCGGCA TTTTTGGCATGCCGT TERM 921 1273604 - 1273628 + g 75 -14.3 -3.28712 | opp_overlap 1273590 1273609, overlap 1273607 ATACTGCGCGCGCCG CAACATCGCCG GCC CGGCGATGATG TTCTCGGAGACGGCG TERM 922 1273607 - 1273625 + g 71 -14.6 -2.52623 | opp_overlap 1273590 1273609, overlap 1273604 CTGCGCGCGCCGCAA CATCGCCG GCC CGGCGATG ATGTTCTCGGAGACG TERM 923 1273684 - 1273657 - G 73 -14.2 -3.13403 | gap 1, overlap 1273655 CGTGCTCCATGAACA GGTCGGGCG-CGA TGA TCGGCACCCGACC ACTCGCGAGCGTGGC TERM 924 1273793 - 1273756 - G 85 -9.8 -4.18018 | gap 1, overlap 1273759 GGGTGTGAGTGAAAA TCACCGCCACCACCGGC CTGTC GCCG-CGGTGGCGGGCA TAGAGCTGCATTGCC TERM 925 1273790 - 1273759 - G 78 -15.9 -3.11208 | gap 1, overlap 1273756 TGTGAGTGAAAATCA CCGCCACCACCGGC CTGTC GCCG-CGGTGGCGG GCATAGAGCTGCATT Rpal_1203 1274485 - 1275138 + | DSBA oxidoreductase Rpal_1204 1275271 - 1276035 + | protein of unknown function DUF81 TERM 926 1276016 - 1276056 + T 95 -18.4 -3.45366 | gap 1, overlap 1276017 AGGGACTGTCTCACC TGGTGCGCGGGGCGACG TAACCGAT CGTCGCCCCGC-CACCG TTGCTTAGTTCGAGG TERM 927 1276017 - 1276055 + T 90 -19.7 -2.66899 | gap 1, overlap 1276016 GGGACTGTCTCACCT GGTGCGCGGGGCGACG TAACCGAT CGTCGCCCCGC-CACC GTTGCTTAGTTCGAG Rpal_1205 1277503 - 1276061 - | cytochrome c oxidase accessory protein CcoG TERM 928 1277319 - 1277295 - G 76 -6.3 -4.48713 | overlap 1277297 1277300 TCGATGAAGAAGAAA TAGAACCGCCG CGC CGGCAGATCGA TCAGCACCGCCTGAT TERM 929 1277354 - 1277300 - G 81 -12 -4.02532 | gap 1, overlap 1277297 1277295 GAAGAAGAAATAGAA CCGCCGCGCCGG-CAGATCGATCAG CACCGC CTGATCGGGCAGGCCGGGGCCGCGG TTCCAACGTAGGAAC Rpal_1206 1277822 - 1277622 - | hypothetical protein Rpal_1207 1278127 - 1278717 + | transcriptional regulator, PadR-like family Rpal_1208 1278806 - 1279339 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Rpal_1209 1279589 - 1279981 + | hypothetical protein TERM 930 1280037 - 1280072 + T 84 -14 -3.74693 | opp_overlap 1280037 1280041, overlap 1280038 GAGTGCCGCGACGAA CCAATCCAGGGCCCCG TGCT CGGTGCTCTGGATTGC TTTGCTACGCTCGCA TERM 931 1280072 - 1280037 - T 70 -11.8 -3.14344 | opp_overlap 1280037 1280038, overlap 1280041 GAGTGCCGCGACGAA CCAATCCAGGGCCCCG TGCT CGGTGCTCTGGATTGC TTTGCTACGCTCGCA TERM 932 1280038 - 1280071 + T 87 -17.5 -2.84602 | opp_overlap 1280037 1280041, overlap 1280037 AGTGCCGCGACGAAC CAATCCAGGGCCCCG TGCT CGGTGCTCTGGATTG CTTTGCTACGCTCGC TERM 933 1280068 - 1280041 - T 71 -11.2 -3.39895 | opp_overlap 1280038 1280037, overlap 1280037 GCCGCGACGAACCAA TCCAGGGCCCCG TGCT CGGTGCTCTGGA TTGCTTTGCTACGCT TERM 934 1280175 - 1280193 + T 86 -8.1 -4.57073 | gap 1 TTATCAAAACGCATT GC-CGGCC GGAC GGCCGAGC TTTTTGAACACGATC Rpal_1210 1280363 - 1280163 - | conserved hypothetical protein; putative secreted protein Rpal_1211 1280444 - 1280785 + | transcriptional regulator, ArsR family Rpal_1212 1280787 - 1281782 + | efflux transporter, RND family, MFP subunit Rpal_1213 1281779 - 1285003 + | acriflavin resistance protein Rpal_1214 1285065 - 1285718 + | DSBA oxidoreductase Rpal_1215 1285927 - 1286238 + | hypothetical protein TERM 935 1287176 - 1287186 + G 72 -8.2 -4.04997 | overlap 1287168 GTGGCAGGCGGGATC GGCG TCA CGCC TTTCGTTGCTTTGCT Rpal_1216 1286243 - 1287505 + | Ferric reductase domain protein transmembrane component domain Rpal_1217 1287502 - 1287867 + | cytochrome b5 TERM 936 1287956 - 1287922 - T 81 -10 -4.12902 | opp_overlap 1287922 1287922, overlap 1287924 1287925 CAACCACGGCCAAAA GAGCTCCGGTTCTGAT TGG ATCAGAACCGGAGAAA CTTATTTGCGTCAGG TERM 937 1287922 - 1287957 + T 76 -9.8 -3.96216 | gap 1, opp_overlap 1287922 1287924 1287925, overlap 1287922 CAACCACGGCCAAAA G-AGCTCCGGTTCTGAT TGG ATCAGAACCGGAGAAAC TTATTTGCGTCAGGC TERM 938 1287954 - 1287924 - T 100 -17 -3.6581 | opp_overlap 1287922 1287922, overlap 1287922 1287925 ACCACGGCCAAAAGA GCTCCGGTTCTGAT TGG ATCAGAACCGGAGA AACTTATTTGCGTCA TERM 939 1287953 - 1287925 - T 91 -20.5 -2.79004 | opp_overlap 1287922 1287922, overlap 1287924 1287922 CCACGGCCAAAAGAG CTCCGGTTCTGAT TGG ATCAGAACCGGAG AAACTTATTTGCGTC Rpal_1218 1289097 - 1287967 - | DNA methylase N-4/N-6 domain protein TERM 940 1288130 - 1288162 + g 73 -11.2 -3.65224 | gap 1 TCGCCGAGCATGATG GCGCCGTCGGCGCGC ACCA GTGCGCCG-TGCCGC TTCTTCGAATCGACT Rpal_1219 1289477 - 1290394 + | protein of unknown function zinc metallopeptidase putative TERM 941 1290425 - 1290456 + F 84 -10.9 -4.16943 | gap 1, overlap 1290451 CTGCAGATATTCATT CGT-CATGCCCGGC CTTGT GCCGGGCATCCACG TTTTGCGGTATGCCG Rpal_1220 1290533 - 1291081 + | molybdenum cofactor biosynthesis protein B Rpal_1221 1291194 - 1292012 + | coenzyme A transferase Rpal_1222 1292009 - 1292761 + | coenzyme A transferase Rpal_1223 1293859 - 1292921 - | transcriptional regulator, MarR family with acetyltransferase activity Rpal_1224 1294593 - 1294027 - | hypothetical protein TERM 942 1294799 - 1294839 + G 73 -13.9 -3.12668 | gap 1, overlap 1294806 1294809 CATCCAATGCCCTCA AGCGCCCGCCGGTCACGG CGCCCT CCGAG-CCGGTGGGCGCG TCTTCCCCTTTCCCC Rpal_1225 1294774 - 1295934 + | Radical SAM domain protein Rpal_1226 1296031 - 1296876 + | Ribonuclease H TERM 943 1298197 - 1298218 + G 72 -7.1 -4.24342 | overlap 1298198 TCGCCAGCCTGATCG CGCTGGCGC CGTC GCGCCCGCA TTTGTTCCTCGACGC Rpal_1227 1296948 - 1298456 + | hypothetical protein Rpal_1228 1299345 - 1298515 - | phage SPO1 DNA polymerase-related protein Rpal_1229 1299547 - 1301205 + | Electron-transferring-flavoprotein dehydrogenase TERM 944 1301415 - 1301439 + F 89 -11.3 -4.26076 | CGACGCGATGCTGCC GGCTCGGCGGC CGG GCCAACGAGCC TTTTCCTGGAGCTAG Rpal_1230 1301464 - 1303248 + | Tetratricopeptide TPR_2 repeat protein Rpal_1231 1303353 - 1304252 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 945 1304371 - 1304319 - T 72 -12 -3.32844 | gap 2, opp_overlap 1304292 1304287 1304321 1304324, overlap 1304321 1304322 TCTCGCAGTTCAGAA CATCTCGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGAC--GTTG CTTGTTTGAGGAAGA TERM 946 1304321 - 1304372 + T 86 -13.6 -3.90744 | gap 1, opp_overlap 1304319 1304321 1304322, overlap 1304292 1304287 1304324 TCGCAGTTCAGAACA TC-TCGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACGTTGC TTGTTTGAGGAAGAG TERM 947 1304371 - 1304321 - T 76 -13.8 -3.23393 | opp_overlap 1304292 1304287 1304321 1304324, overlap 1304319 1304322 TCGCAGTTCAGAACA TCTCGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACGTTG CTTGTTTGAGGAAGA TERM 948 1304370 - 1304322 - T 83 -17.3 -2.53822 | opp_overlap 1304292 1304287 1304321 1304324, overlap 1304319 1304321 CGCAGTTCAGAACAT CTCGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACGTT GCTTGTTTGAGGAAG TERM 949 1304324 - 1304368 + T 100 -24.3 -3.61652 | opp_overlap 1304322 1304319 1304321, overlap 1304292 1304287 1304321 CAGTTCAGAACATCT CGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACG TTGCTTGTTTGAGGA Rpal_1232 1305408 - 1304398 - | Polyprenyl synthetase Rpal_1233 1305616 - 1305843 + | hypothetical protein Rpal_1234 1305836 - 1306615 + | methyltransferase small TERM 950 1307337 - 1307321 - g 77 -7.9 -4.31692 | overlap 1307322 AACTGATCAGGAAAA TCGGCGT CGA ACGCCGG CTCTACACCGCCGGC Rpal_1235 1306861 - 1307763 + | peptidase S49 Rpal_1236 1307882 - 1308070 + | hypothetical protein TERM 951 1308440 - 1308461 + F 78 -10.1 -4.07687 | TTGATTTGCCGGGGC GCGGCCG ATACGGTC CGGCCGC TTTTCCAAAAACCCT Rpal_1237 1308496 - 1309440 + | glycyl-tRNA synthetase, alpha subunit Rpal_1238 1309522 - 1309956 + | protein of unknown function DUF559 Rpal_1239 1309956 - 1312238 + | glycyl-tRNA synthetase, beta subunit Rpal_1240 1312697 - 1313800 + | hypothetical protein Rpal_1241 1315100 - 1313814 - | membrane protein-like protein TERM 952 1314646 - 1314636 - G 74 -2.4 -4.77036 | GCTGAGGATCAAAAA CTGC GCC GCTG TGGTGATCTCGCGCG Rpal_1242 1315575 - 1315730 + | hypothetical protein TERM 953 1315770 - 1315787 + F 72 -2.5 -4.73094 | opp_overlap 1315770, overlap 1315765 TTGAGACCGCCAAAA CGTGGTC TAAA GCCCCCG TTTTCTGTTCCTCTT TERM 954 1316175 - 1316139 - g 77 -12.1 -3.6279 | AAAGCCCGCCAAGAA GCCCACCGCCAACGCGG TTG CCGCGCCGAAGGCCGGC AAGTGGGTCTACACC TERM 955 1316609 - 1316630 + G 73 -14.5 -2.90615 | overlap 1316607 CGATGTACTCGGACG TGGTGCTCG GCTT CGAGCACCA TCATTTCGAGGAAAT TERM 956 1316788 - 1316737 - g 73 -12.1 -3.47322 | gap 1, overlap 1316733 GGCCAGTACAAGGAA GCCGTGGCGCGCGAGACCGGCGAG GACTT CCCGCAGGATCCGCACGCC-CAGC TGTGGGGCGCGATCG Rpal_1243 1315822 - 1318848 + | pyruvate, phosphate dikinase TERM 957 1318872 - 1318905 + F 77 -13.2 -3.63336 | opp_overlap 1318871, overlap 1318874 1318878 CGCAATTGATCAGAT TTCGAATGGCCGGG CTTCGT CCCGGCCATTTGTA TTTGGGCTGGTATCT TERM 958 1318874 - 1318903 + F 84 -15.8 -3.39286 | opp_overlap 1318871, overlap 1318872 1318878 CAATTGATCAGATTT CGAATGGCCGGG CTTCGT CCCGGCCATTTG TATTTGGGCTGGTAT TERM 959 1318878 - 1318899 + F 95 -13 -4.33928 | opp_overlap 1318871, overlap 1318874 1318872 TGATCAGATTTCGAA TGGCCGGG CTTCGT CCCGGCCA TTTGTATTTGGGCTG Rpal_1244 1319165 - 1320595 + | cell wall hydrolase SleB TERM 960 1320601 - 1320631 + T 76 -9.1 -4.0825 | opp_overlap 1320596, overlap 1320608 GGGCAACTAAGCGGG CAGCGC-GCACAGGC CTG GCCTGTGTTGC-CTG TTGTTTCCTTGACAG TERM 961 1320608 - 1320624 + T 72 -12.3 -3.2661 | overlap 1320601 TAAGCGGGCAGCGCG CACAGGC CTG GCCTGTG TTGCCTGTTGTTTCC Rpal_1245 1322028 - 1321153 - | nicotinate-nucleotide pyrophosphorylase TERM 962 1321291 - 1321314 + g 70 -5.9 -4.17556 | gap 1, overlap 1321257 AGCTTCGAGCACGAC GCGGCCGGCG CTCAT CGCCA-CCGC TTTCTTCAGCGTGTC Rpal_1246 1323661 - 1322045 - | L-aspartate oxidase Rpal_1247 1324867 - 1323755 - | quinolinate synthetase complex, A subunit TERM 963 1325682 - 1325704 + G 71 -14.8 -2.54896 | opp_overlap 1325670, overlap 1325687 GGACGGCCCGGTGGT CGTCGCCGGC GCG GCTGGCGGCG TCGGTTCGGTAGCGA Rpal_1248 1325221 - 1326207 + | quinone oxidoreductase, YhdH/YhfP family TERM 964 1326244 - 1326263 + F 70 -7.8 -4.08706 | opp_overlap 1326244 1326243 1326240 1326239, overlap 1326240 ACTTTACCAACCAAG CTGCGCCA TTCT TGCCGCAG TTTGTATGGTAAGGA Rpal_1249 1326322 - 1326906 + | hypothetical protein Rpal_1250 1329621 - 1326940 - | hypothetical protein TERM 965 1328507 - 1328450 - G 79 -11.2 -3.96093 | gap 3, overlap 1328454 1328458 GACAGGAACACCAAA CCGACCAAGCCTGCCGCAGC-GCCGACCG CAG CGGT-GGCGGCCGCGGCGCGCCAGG-CGA TGCCGAGCGTTGCGG TERM 966 1328505 - 1328458 - G 78 -14.8 -3.25802 | gap 1, overlap 1328454 1328450 CACCAAACCGACCAA GCCTGCCGCAGCGCCGACCGC AGCGGTG GCGGCCG-CGGCGCGCCAGGC GATGCCGAGCGTTGC TERM 967 1328952 - 1328921 - G 72 -8.7 -4.07687 | gap 2, overlap 1328907 1328905 1328922 ACGGGCGTCGCAAAA CCGGCGACGACGCCG AGCC CGGCGA-GT-GCCGG TCCGTGGAGCAGTGC TERM 968 1329110 - 1329140 + g 70 -8.3 -3.90112 | overlap 1329133 ATCGCCGGGATGTTG GCGATCG-GCAGCGC GGC GAGCTGCGCGA-CGC TTTCCTTGCGGCGCG TERM 969 1329704 - 1329676 - R 74 -13.8 -2.88822 | gap 1, opp_overlap 1329680, overlap 1329673 GCTTTGACAGAATTA CCGCCGGCC-GCG CACG CGCAGGCCGGGGG CGGGCCGTTCCTGCA Rpal_1251 1330668 - 1329673 - | hypothetical protein Rpal_1252 1331171 - 1330665 - | hypothetical protein Rpal_1253 1331855 - 1331238 - | metal dependent phosphohydrolase TERM 970 1331488 - 1331502 + g 72 -8.5 -4.08692 | AATCGGATGTGGATC GCGCC GAGCA GGCGC TTTTCGACCCGCTTG TERM 971 1331822 - 1331779 - G 74 -10.3 -3.767 | gap 2 GAGGGATCGAGCAAA TCGAGCCTGCGGCCGGACAGC ATCC GCTG-CCAGACGC-GGCTGGA GGCTTGCGACGATTT Rpal_1254 1332033 - 1332203 + | hypothetical protein Rpal_1255 1332866 - 1332210 - | DNA-3-methyladenine glycosylase I TERM 972 1332239 - 1332263 + g 100 -14.2 -5.21709 | opp_overlap 1332209 1332229 1332254 ACGAAGCCCTCTTCG CCGGCGCCGC AGAAC GCCGCGCCGG TTTTTTCATCTGCCC Rpal_1256 1333744 - 1332863 - | folate-binding protein YgfZ TERM 973 1334856 - 1334833 - g 71 -3.1 -4.63932 | gap 1, overlap 1334834 TACGCTGGAAGAAAA GGCCAAGACC TATCC GGCCTCG-CC ATCGGGCATGACTGG TERM 974 1334947 - 1334971 + G 70 -11.3 -3.60627 | overlap 1334950 1334955 ACGCTTCGTTGATCT CACCAGCGCCG GCC CGGCGCGGCTG TTTGGCATCGCCTGC Rpal_1257 1333892 - 1335226 + | dihydroorotase, multifunctional complex type TERM 975 1335685 - 1335655 - f 71 -8.2 -3.92324 | GTGGTTAACAGGAAA GCAACGCAACAGGC GCA GCATTTCGCGTCGC ACGATCGCCGGGATC Rpal_1258 1335735 - 1335890 + | hypothetical protein Rpal_1259 1336174 - 1335911 - | hypothetical protein Rpal_1260 1336682 - 1336305 - | hypothetical protein TERM 976 1336686 - 1336700 + r 76 -11.4 -3.72576 | ACGCTTCAGCATGGC CGGCCT GAT AGGCCG TTTCATCGGCCGCAG Rpal_1261 1337188 - 1336745 - | NUDIX hydrolase Rpal_1262 1337691 - 1337185 - | hypothetical protein TERM 977 1337674 - 1337690 + g 89 -3.5 -5.27335 | overlap 1337675 AGCTGTGGATTCACT CGACGCC ATC GGCGGCA TTTTTGTTTACCGAA TERM 978 1337919 - 1337944 + G 70 -4 -4.46615 | gap 1, opp_overlap 1337935 1337936 GCTGGGGGCTGATCC CGTCC-TGGGT GAAAG ATCCGCGGACG TTTTCATTGCTGATC Rpal_1263 1337744 - 1338517 + | protein of unknown function DUF159 Rpal_1264 1338543 - 1338773 + | hypothetical protein Rpal_1265 1338770 - 1339066 + | plasmid stabilization system Rpal_1266 1340496 - 1339069 - | FAD linked oxidase domain protein Rpal_1267 1341595 - 1340615 - | Sua5/YciO/YrdC/YwlC family protein TERM 979 1341525 - 1341546 + g 71 -13.7 -2.92475 | gap 1, overlap 1341527 AACGCGACCAGCCCA CCGC-CGCGC AGC GCGCGCGCGG CTTTGTCCGCATCCG TERM 980 1341527 - 1341547 + g 77 -11.1 -3.87815 | overlap 1341525 CGCGACCAGCCCACC GCCGCGC AGCGCGC GCGCGGC TTTGTCCGCATCCGC TERM 981 1342014 - 1342027 + G 74 -8.1 -4.25104 | GATCACGCTGTACGA CGTGC GCCG GCACG TTTTGATGGAAAACG Rpal_1268 1341841 - 1342743 + | transcriptional regulator, AraC family Rpal_1269 1342869 - 1344155 + | major facilitator superfamily MFS_1 TERM 982 1344199 - 1344175 - g 77 -14.2 -3.35371 | opp_overlap 1344177 GATACGTCCAAGGAA CCGGCTCCGG CATGT CCGGGGCCGG ATCCGGCCCCGCGAC Rpal_1270 1344148 - 1345050 + | amidohydrolase 2 TERM 983 1345066 - 1345092 + T 75 -13.7 -3.06302 | gap 1 GTTTTGTGCGTTCAA CCGCCGCCC-CT AACC GGAGGGCGGCGG TTGGATAAAAATCCT Rpal_1271 1346001 - 1345348 - | hypothetical protein Rpal_1272 1346352 - 1347686 + | Curlin associated repeat protein TERM 984 1347734 - 1347777 + F 78 -15.2 -2.75064 | overlap 1347742 1347771 CGCCTCGCTCTCTTC CGGGAATTGCAGCGACCGGA CGCG TCCGGTCGCCGATCTTCCCG TGGTTGCGTCGCGGA Rpal_1273 1347801 - 1348121 + | hypothetical protein TERM 985 1348194 - 1348233 + G 78 -6.4 -4.61633 | gap 1, overlap 1348195 GCGGTGTGGCGTTTG CCGGTGTGGCG-TCGGC GCAGTCG GCCGATCTCTACACCGA TTTTTCCGGCTATCT Rpal_1274 1348118 - 1348609 + | hypothetical protein Rpal_1275 1348606 - 1349022 + | hypothetical protein Rpal_1276 1349074 - 1350015 + | curli production assembly/transport component CsgG Rpal_1277 1350018 - 1350812 + | Lytic transglycosylase catalytic TERM 986 1350842 - 1350815 - T 71 -9 -3.71378 | opp_overlap 1350815 1350827, overlap 1350819 1350831 GACGGCATATTGAAA CCGACGTGCCGA CGAA CCGGCACGGCCG ATCACGGCAGGCGGT Rpal_1278 1351125 - 1350844 - | hypothetical protein Rpal_1279 1351400 - 1351660 + | hypothetical protein TERM 987 1351714 - 1351733 + F 86 -16.4 -3.20723 | overlap 1351717 AGTCGTCCCCGCGTG CGCGGCGG TTCG CCGCCGCG TTCGGTTGATCAAGA TERM 988 1351717 - 1351773 + F 93 -20.2 -3.00298 | gap 1, opp_overlap 1351755, overlap 1351714 CGTCCCCGCGTGCGC GGCGGTTCGCCGCCGCGTTCGGTTGAT CAAG ATCAACAGGACGCTGCGGCGC-TCGCC TCTATCCTTCGCAGG TERM 989 1352272 - 1352248 - g 85 -9.9 -4.18018 | opp_overlap 1352269 1352270 GGCGGTGATCCAAAA CGTCGCGTTCG CCT CGATCGAGACG CGGCTGGCCTCGCGC Rpal_1280 1351814 - 1352485 + | transcriptional regulator, Crp/Fnr family TERM 990 1352717 - 1352735 + G 73 -6.6 -4.4017 | CGGCGTCGTCCCGCT GCTGACCG CGG CGATCGGC TTTTGTCCGGCTTAC Rpal_1281 1352601 - 1352789 + | conserved hypothetical secreted protein TERM 991 1352805 - 1352845 + F 72 -7.5 -4.2123 | gap 1, overlap 1352810 CGTCCACTACCCAAG TGTGGCTCTCGGG-GCGG CGCAGC CCGCTCCCGGGAGTTGCC TTTGTTGAATAGGTG TERM 992 1352810 - 1352840 + F 74 -12.6 -3.38162 | gap 1, overlap 1352805 ACTACCCAAGTGTGG CTCTCGGG-GCGG CGCAGC CCGCTCCCGGGAG TTGCCTTTGTTGAAT Rpal_1282 1352866 - 1353237 + | alkylhydroperoxidase like protein, AhpD family Rpal_1283 1353373 - 1354452 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 993 1355473 - 1355424 - g 77 -11.3 -3.78934 | opp_overlap 1355457 GCTGGTGCAGAAGAA GCTCGCCGACATGGAGACCGAGA TCAC CCTCGGTCTGCAGGCCAGCTTGC GCGTCGGCCGGCTGA Rpal_1284 1354513 - 1355727 + | acyl-CoA dehydrogenase domain protein TERM 994 1356731 - 1356754 + G 78 -15.2 -3.2218 | CTATATCGGCATCGA CCCGCGGCTC GTCG GCGCCGCGGG TTACTCGGTGTTGGC Rpal_1285 1355922 - 1356854 + | beta-lactamase domain protein Rpal_1286 1358619 - 1356868 - | methyl-accepting chemotaxis sensory transducer Rpal_1287 1358816 - 1359562 + | protein of unknown function DUF28 Rpal_1288 1359913 - 1359608 - | hypothetical protein TERM 995 1360504 - 1360470 - g 77 -5.7 -4.63486 | gap 2 ATCTCGTCAAGAAAA CCGTGGTCGGTGCCGGC CAT GCCGACAA-GACC-CAG ATCCAGATGATGCTG Rpal_1289 1360115 - 1360639 + | crossover junction endodeoxyribonuclease RuvC Rpal_1290 1360824 - 1361441 + | Holliday junction DNA helicase RuvA Rpal_1291 1361438 - 1361863 + | CMP/dCMP deaminase zinc-binding Rpal_1292 1362042 - 1363091 + | Holliday junction DNA helicase RuvB Rpal_1293 1363099 - 1363563 + | tol-pal system-associated acyl-CoA thioesterase TERM 996 1364344 - 1364317 - g 70 -13.4 -3.05463 | gap 1, opp_overlap 1364318 1364319 1364333 1364335 1364335 ATCGTGCTGATCGAA GCCGCGCCGCGCA TTC TGC-CGGCGCTGC CGCCGCGTATTTCGG Rpal_1294 1363663 - 1364973 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rpal_1295 1365083 - 1366333 + | OpgC protein-like protein Rpal_1296 1366391 - 1366858 + | protein of unknown function DUF1348 Rpal_1297 1366875 - 1367423 + | transcriptional regulator, TetR family Rpal_1298 1367573 - 1367944 + | DGPFAETKE family protein Rpal_1299 1367941 - 1369209 + | putative RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_1300 1370018 - 1369230 - | short-chain dehydrogenase/reductase SDR Rpal_1301 1370259 - 1370435 + | hypothetical protein TERM 997 1370447 - 1370482 + T 74 -13.3 -3.34895 | gap 1, opp_overlap 1370431 1370451, overlap 1370426 1370448 1370451 1370480 CTGATCGTCGCTTAC GGAAGCGCCGCCTGCG TTGTT TGC-GGCGGCGCTTCG TTCGTTGGCACTAAC TERM 998 1370448 - 1370481 + T 80 -16.8 -2.60723 | gap 1, opp_overlap 1370431 1370451, overlap 1370426 1370447 1370451 1370480 TGATCGTCGCTTACG GAAGCGCCGCCTGCG TTGTT TGC-GGCGGCGCTTC GTTCGTTGGCACTAA TERM 999 1370451 - 1370478 + T 76 -12.7 -3.45366 | gap 1, opp_overlap 1370431 1370451, overlap 1370426 1370448 1370447 TCGTCGCTTACGGAA GCGCCGCCTGCG TTGTT TGC-GGCGGCGC TTCGTTCGTTGGCAC Rpal_1302 1370612 - 1370511 - | hypothetical protein Rpal_1303 1370940 - 1371356 + | DGPFAETKE family protein TERM 1000 1371576 - 1371558 - g 70 -11.7 -3.37612 | GGCAATCTCAAGGAA GCGCTGC TGCAG GCAGCGC TTGGGCTGATCGCGG Rpal_1304 1371495 - 1372199 + | transcriptional regulator, TetR family Rpal_1305 1372342 - 1372809 + | hypothetical protein TERM 1001 1372840 - 1372875 + F 100 -11.7 -5.25803 | overlap 1372843 GACCCTCCAGCGCCA ACCGCCGCCCGCCTG AGCCCC CAGGCGGGCGGCTTC TTTTTTGTCGCGCTT TERM 1002 1372843 - 1372872 + F 100 -22.2 -4.72201 | overlap 1372840 CCTCCAGCGCCAACC GCCGCCCGCCTG AGCCCC CAGGCGGGCGGC TTCTTTTTTGTCGCG Rpal_1306 1372959 - 1373426 + | alkylhydroperoxidase like protein, AhpD family Rpal_1307 1373410 - 1374315 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_1308 1374623 - 1375333 + | protein TolQ Rpal_1309 1375431 - 1375838 + | Biopolymer transport protein ExbD/TolR Rpal_1310 1375887 - 1376870 + | protein TolA Rpal_1311 1376943 - 1378277 + | Tol-Pal system beta propeller repeat protein TolB TERM 1003 1378284 - 1378336 + F 84 -17.1 -2.80935 | opp_overlap 1378297 CTGTCCTGACCACTG AGCGTTGAACTCACCGTAAGTTCCG AGC CGAGATTTACGGTGAGTTCCGCGCG TGTCGTCGGTGCCGT TERM 1004 1380191 - 1380209 + G 72 -11.8 -3.53012 | opp_overlap 1380191 TGGATTCTGCGCAAA GCATGCAT GGA ATGCATGC TTTGGCCGGAGCCGG TERM 1005 1380209 - 1380191 - g 72 -11.8 -3.53811 | opp_overlap 1380191 TGGATTCTGCGCAAA GCATGCAT GGA ATGCATGC TTTGGCCGGAGCCGG TERM 1006 1380762 - 1380737 - g 84 -9 -4.56597 | opp_overlap 1380737, overlap 1380739 GGGGTGCGCCAAAAA GACGGCAAAG TGCTTT CTTTGCCGAC GCGATCGATCGCCTA TERM 1007 1380760 - 1380739 - g 77 -10.2 -3.90048 | opp_overlap 1380737, overlap 1380737 GGTGCGCCAAAAAGA CGGCAAAG TGCTTT CTTTGCCG ACGCGATCGATCGCC Rpal_1312 1378448 - 1380778 + | diguanylate cyclase/phosphodiesterase TERM 1008 1381543 - 1381533 - g 83 -8.2 -4.68593 | overlap 1381535 TCCAGGATTGAAAAA GCCC ATC GGGC TAATGGAGATCGACT Rpal_1313 1380973 - 1381722 + | hypothetical protein TERM 1009 1382321 - 1382282 - g 73 -13.6 -3.30124 | overlap 1382285 CGCGACCCTCGACAA GCAGGTGCAGTGGCTGCA GACT TACAGCCGCTACACCTTC ACCATCGAAGGCCAC TERM 1010 1382318 - 1382285 - g 71 -13.9 -2.8294 | overlap 1382282 GACCCTCGACAAGCA GGTGCAGTGGCTGCA GACT TACAGCCGCTACACC TTCACCATCGAAGGC Rpal_1314 1382049 - 1382546 + | peptidoglycan-associated lipoprotein TERM 1011 1382574 - 1382591 + F 100 -14.1 -5.65496 | opp_overlap 1382574 ATCGAAGTCGCAAAA CGGCGCC GCGG GGCGCCG TTTTTGTTTTTGGTG TERM 1012 1382591 - 1382574 - f 93 -14.1 -4.1466 | opp_overlap 1382574 ATCGAAGTCGCAAAA CGGCGCC GCGG GGCGCCG TTTTTGTTTTTGGTG TERM 1013 1383082 - 1383115 + G 74 -14.5 -3.07816 | gap 1 TCAGCCGCAACCGGC CGCGCCGC-AGGGCGG AGG CCGCCGTGGCGACGCG TTCGATCCGTCGCGC TERM 1014 1383330 - 1383308 - g 78 -14.8 -3.33696 | opp_overlap 1383304 1383313 1383319 TCCGCCGCTAAGCAA CCGCCCGCTG CCG CAGCCGGCGG CGCTTTGACGACGCA Rpal_1315 1382702 - 1383739 + | tol-pal system protein YbgF TERM 1015 1383863 - 1383911 + G 74 -16 -2.64616 | gap 2 GCCGACTGGAAGGCG GCGCCGGCGA-TCGTGC-TGGCGG TCT CCGGCGGGCCCGACTCGCTGGCGC TGATGTGGCTCGCCG Rpal_1316 1383794 - 1384834 + | tRNA(Ile)-lysidine synthetase Rpal_1317 1385066 - 1386982 + | ATP-dependent metalloprotease FtsH TERM 1016 1387004 - 1387035 + F 95 -19.6 -3.12351 | opp_overlap 1387011, overlap 1387011 CGGCCAACCTGACTT CGAAAAACGCGGCG GCGA CGCCGCGTTTTTTG TTGCGTGTCGCCCGC TERM 1017 1387011 - 1387028 + F 100 -14.1 -5.49234 | opp_overlap 1387011, overlap 1387004 CCTGACTTCGAAAAA CGCGGCG GCGA CGCCGCG TTTTTTGTTGCGTGT TERM 1018 1387028 - 1387011 - f 100 -14.1 -4.59773 | opp_overlap 1387004 1387011 CCTGACTTCGAAAAA CGCGGCG GCGA CGCCGCG TTTTTTGTTGCGTGT Rpal_1318 1387115 - 1387864 + | AzlC family protein Rpal_1319 1387861 - 1388178 + | branched-chain amino acid transport Rpal_1320 1388365 - 1389039 + | transcriptional regulator, TetR family TERM 1019 1390334 - 1390285 - g 77 -10.7 -3.87373 | gap 1, opp_overlap 1390329, overlap 1390287 GAGATGTCCGAGAAA TACGGCCTGCGCGTCGCCAACGTA TTC CACGCCGGCGACG-GCAATCTGCA TCCGCTGATCCTGTA TERM 1020 1390332 - 1390287 - g 70 -11.1 -3.5241 | gap 1, opp_overlap 1390329, overlap 1390285 GATGTCCGAGAAATA CGGCCTGCGCGTCGCCAACGTA TTC CACGCCGGCGACG-GCAATCTG CATCCGCTGATCCTG Rpal_1321 1389163 - 1390656 + | FAD linked oxidase domain protein Rpal_1322 1390819 - 1392060 + | FAD linked oxidase domain protein Rpal_1323 1392057 - 1393370 + | protein of unknown function DUF224 cysteine-rich region domain protein Rpal_1324 1393445 - 1394380 + | hypothetical protein TERM 1021 1394412 - 1394434 + F 95 -20.6 -3.21747 | ATCCTGGTTTGCAGA GGCCGCGGTC CTG GACCGCGGCC TTCGTCGTCACGTCC Rpal_1325 1394801 - 1395772 + | hypothetical protein TERM 1022 1395799 - 1395822 + T 100 -19.6 -5.69262 | opp_overlap 1395780 TTCTGGGGGGCTGAA GGGCGGCAGG GTGA CCTGCCGCCC TTTTTGTTTTTCTGC Rpal_1326 1397794 - 1396034 - | ABC transporter domain protein TERM 1023 1397747 - 1397775 + g 77 -13.2 -3.61589 | opp_overlap 1397744 1397742 1397745, overlap 1397745 GGCACTGAAATACGG CGC-GGCGATCCGC CAG GCGG-TCGCCAGCG TTCCTTTGATGTTGC Rpal_1327 1398065 - 1399729 + | L-lactate transport TERM 1024 1399780 - 1399757 - f 100 -21 -3.55622 | opp_overlap 1399757 CTGAATTGCGCCAAA GCCCCGCGGC CTCG GCCGCGGGGC TTTTCGTTGCAGGCT TERM 1025 1399757 - 1399780 + F 100 -21 -4.41047 | opp_overlap 1399757 CTGAATTGCGCCAAA GCCCCGCGGC CTCG GCCGCGGGGC TTTTCGTTGCAGGCT Rpal_1328 1399874 - 1400290 + | hypothetical protein Rpal_1329 1401798 - 1400293 - | FAD dependent oxidoreductase Rpal_1330 1403104 - 1401911 - | putative exported protein of unknown function TERM 1026 1403287 - 1403262 - R 100 -20.5 -4.56597 | opp_overlap 1403266 GTGCGGCGCCAAAAA GCAAGGCCGCC CGGA GGCGGCCTTGC ATGATCGATCTTCAG TERM 1027 1403266 - 1403283 + r 75 -14.1 -3.10343 | opp_overlap 1403262 GGCGCCAAAAAGCAA GGCCGCC CGGA GGCGGCC TTGCATGATCGATCT Rpal_1331 1404962 - 1403319 - | chaperonin GroEL Rpal_1332 1405298 - 1405002 - | chaperonin Cpn10 Rpal_1333 1405596 - 1406111 + | hypothetical protein TERM 1028 1407299 - 1407321 + G 79 -11.2 -3.99324 | AGGTCGGGATGGTCT GCGCCCTGGC GGC GCTGGGGTGC TTTCTGGTGCTGCAG Rpal_1334 1406155 - 1407363 + | major facilitator superfamily MFS_1 Rpal_1335 1408170 - 1407379 - | putative chemotaxis phosphatase, CheZ TERM 1029 1408382 - 1408401 + H 70 -7.2 -3.99405 | gap 1, overlap 1408382 TGCTGTTCGCGTTTA CC-AAACCG ATC CGGTTTTGG TTTCTGATCCGTTGC Rpal_1336 1408471 - 1409259 + | ErfK/YbiS/YcfS/YnhG family protein TERM 1030 1409319 - 1409295 - T 85 -15.7 -3.40403 | overlap 1409274 GCCGTCTTACGACAA CGGCCGCCC TTTTTGG GGGCGGCCG TTGCGCGTTGGCGGA Rpal_1337 1410201 - 1409347 - | putative periplasmic ligand-binding sensor protein TERM 1031 1409693 - 1409672 - G 71 -13.7 -2.81133 | gap 1, overlap 1409652 GAGCCACCGACCACA CCGGCGGCGG CTG CCGCCGC-GG TGCCGAGGAACGAAC TERM 1032 1409985 - 1409963 - G 74 -5.5 -4.47551 | gap 1, overlap 1409958 1409964 ATCGAATCGAGAAAA CCGCCA-CGC TCCT GCGATTGCGG CGCCTGGTCGGCTTC Rpal_1338 1411210 - 1410317 - | YdjC family protein TERM 1033 1410630 - 1410585 - G 73 -12.6 -3.43676 | opp_overlap 1410586, overlap 1410586 CGCAGGAAGTCATAA GCGCCGGCG-AAGCCGGAATTG AATG CGATGCCGGCCTGCGCCG-CGC GGCTGCGGAACGGCG Rpal_1339 1412250 - 1411207 - | glycosyl transferase family 2 TERM 1034 1411554 - 1411612 + g 89 -14.5 -4.07568 | gap 1, opp_overlap 1411567 ACAGCCCGATCAGCC GCGCGGTCGAGAACGTGCTGAAGCCGTG CGAG CGCGGCTCCGGTTCGTAGTCGACC-CGC TTTTGGCGGAAGCCG TERM 1035 1412312 - 1412332 + r 75 -13.9 -3.0701 | overlap 1412311 ATGGTGGTTCCACCC GCCGGCGCC ACC GGCGCCGGG TTGCCTCGGCATTAT Rpal_1340 1413321 - 1412344 - | ATP phosphoribosyltransferase TERM 1036 1413192 - 1413166 - G 72 -14.4 -2.98823 | opp_overlap 1413187 GCTGGCCGACAGATA GGCGACCTCGAC ATT GTCGAGGCCGGC GATCGTGCCGCGATA Rpal_1341 1414466 - 1413318 - | tRNA synthetase class II (G H P and S) TERM 1037 1413700 - 1413721 + g 85 -12.9 -4.1196 | opp_overlap 1413681, overlap 1413715 1413719 TTGATCTTGTCGAGC GCGTCGCGC GGCA GCGCGCCGC TTTTCAGCGTCGATT TERM 1038 1414020 - 1414046 + g 72 -11.4 -3.5393 | GAACAGCGCGACGTC GCCGGTGCGGAC CTC GACCTCGCCGGC TTTGAGCGCCGTGGT TERM 1039 1414410 - 1414458 + g 82 -12.1 -3.99592 | overlap 1414412 1414413 CGCGAAGGATTGCAG CAGCGCCTCCGCCCACGCGGCGG ATC CGGTCGCGCGAGCGGCGGCGGTC TTTGTCATGATCGGT TERM 1040 1414412 - 1414456 + g 81 -14.7 -3.58864 | overlap 1414410 1414413 CGAAGGATTGCAGCA GCGCCTCCGCCCACGCGGCGG ATC CGGTCGCGCGAGCGGCGGCGG TCTTTGTCATGATCG TERM 1041 1414413 - 1414455 + g 85 -18.2 -2.74836 | overlap 1414412 1414410 GAAGGATTGCAGCAG CGCCTCCGCCCACGCGGCGG ATC CGGTCGCGCGAGCGGCGGCG GTCTTTGTCATGATC Rpal_1342 1415366 - 1414611 - | protein of unknown function DUF558 TERM 1042 1415024 - 1415053 + g 70 -11.3 -3.55203 | overlap 1415012 CCTGGGTGTGCTGGG TGAGCACCGGCTG CAGC CGGCCGGCGCCCA TTTCCACAGCCTTTT Rpal_1343 1415558 - 1416274 + | hypothetical protein Rpal_1344 1416271 - 1417221 + | 4-hydroxybenzoate polyprenyl transferase TERM 1043 1417223 - 1417239 + T 79 -15.1 -2.94747 | overlap 1417204 GTAGTATGGCGTGAG GCCGGGC GAG GCCCGGC TCTCTCATCCAATCG Rpal_1345 1417782 - 1417258 - | hypothetical protein TERM 1044 1417743 - 1417715 - G 100 -24.7 -2.91383 | opp_overlap 1417742 ATCGGCAGTGAGAGA GGGTCGAGCCGCA AGT TGCGGCTCGACCC GGCGAGGTTGGCCCC Rpal_1346 1418082 - 1419479 + | peptidase U62 modulator of DNA gyrase Rpal_1347 1419466 - 1420281 + | inositol monophosphatase Rpal_1348 1420319 - 1420567 + | hypothetical protein TERM 1045 1420559 - 1420547 - f 74 -4.7 -4.5448 | GATCCAGAAAAAGAA GCCCG GTC CGCGC AGCACTGATCGCGCG Rpal_1349 1420655 - 1421941 + | Three-deoxy-D-manno-octulosonic-acid transferase domain protein TERM 1046 1422815 - 1422801 - g 73 -4.2 -4.68593 | opp_overlap 1422806, overlap 1422803 1422804 GTCACGACCGAAAAA GATCTG GCG CGGATC GGCCGCGCGCAGCAG Rpal_1350 1421934 - 1422956 + | tetraacyldisaccharide 4'-kinase TERM 1047 1422952 - 1422970 + T 71 -13.2 -3.05844 | AGCTCGCCGGGCGGC GCTGAGAC GCG GTCTCAGC TCTTGGGCTGAAACG Rpal_1351 1423193 - 1422966 - | hypothetical protein TERM 1048 1423242 - 1423212 - R 78 -9.8 -4.08216 | gap 1 CGATCTCCTGGAAAA CCGCAG-GTTGCG GAACGA CGCAACGCTGCAG GTCGATACACCTGAC Rpal_1352 1424953 - 1423340 - | exodeoxyribonuclease VII, large subunit Rpal_1353 1425191 - 1426474 + | phosphoribosylamine/glycine ligase Rpal_1354 1426638 - 1427546 + | alpha/beta hydrolase fold Rpal_1355 1427976 - 1427530 - | CMP/dCMP deaminase zinc-binding TERM 1049 1428339 - 1428319 - g 72 -5.4 -4.30719 | GGGCCGGAGAAGAAA TTCGCCAA GCGCG CCGGCGAA GGTGCCGGCGAGGGA TERM 1050 1428918 - 1428936 + G 70 -13.1 -3.05384 | opp_overlap 1428915 1428930 CCGGTTCGACAAGCC CCGCGGC GACAA GCCGCGG TTCGATCGCGGCGAG Rpal_1356 1428142 - 1430352 + | RNA-binding S4 domain protein TERM 1051 1430389 - 1430432 + F 72 -13.9 -2.71791 | gap 2, overlap 1430388 TTGGCCTTGCAGCGC GCACGGCTGAACCTCTCCCCG CGTG CGGGGAGAGGT-C-GACGCGC ATTTGCGCGGCGGGT Rpal_1357 1430591 - 1431157 + | methyltransferase Rpal_1358 1432383 - 1431361 - | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific TERM 1052 1432316 - 1432365 + g 100 -9.9 -5.27476 | overlap 1432302 GCGGGTTTCGCCTTC GCGACAGCCGTCTTCGCAGCT TTCGGCCT AGCTGCCTTGGCGGCTTTCGC TTTTGTTTTCTTCGC Rpal_1359 1432850 - 1432383 - | molybdopterin biosynthesis MoaE protein Rpal_1360 1433128 - 1432877 - | molybdopterin converting factor, subunit 1 TERM 1053 1433042 - 1433075 + g 73 -13.9 -3.13403 | gap 1, opp_overlap 1433035 1433032, overlap 1433015 1433017 1433040 GCCAATCAGGTCGGC GACGGTTGTCACCGCC GGC GGCGGTT-CGACCGTC TCTTCGTCGACGCCG Rpal_1361 1433751 - 1433125 - | CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase Rpal_1362 1436005 - 1433891 - | excinuclease ABC, C subunit TERM 1054 1435631 - 1435655 + g 73 -11.3 -3.70751 | CAGCACCTGGCCTGT GGGGCGGGCGT AGG ACGCCAGCCGC TTCTTCACATTCTTG Rpal_1363 1436316 - 1436939 + | putative outer-membrane immunogenic protein precursor TERM 1055 1437023 - 1437046 + T 100 -19.6 -5.0065 | AACTTGGATCATCAC TCCCGGCCGG TTTT CCGGCCGGGA TTTTCTTTGTCGGTG Rpal_1364 1437573 - 1437358 - | cold-shock DNA-binding domain protein Rpal_1365 1438704 - 1437847 - | protein of unknown function DUF519 TERM 1056 1438293 - 1438321 + g 72 -14.5 -2.70932 | CCACCACCCGGCCCT GCGGGTCGTGGCG CAG CGCCGCGATCAGC TGCTTGCGCGCCACC Rpal_1366 1438998 - 1439393 + | response regulator receiver protein TERM 1057 1439430 - 1439452 + T 100 -17 -4.85782 | opp_overlap 1439430 CGCACGGGTTTAGAA CGCGCTCCTC ATC GAGGGGCGCG TTTGTTTTTGCAGCA TERM 1058 1439452 - 1439430 - T 82 -14.8 -3.29511 | opp_overlap 1439430 CGCACGGGTTTAGAA CGCGCTCCTC ATC GAGGGGCGCG TTTGTTTTTGCAGCA Rpal_1367 1439873 - 1439478 - | hypothetical protein Rpal_1368 1440245 - 1440042 - | 4-oxalocrotonate tautomerase Rpal_1369 1441913 - 1440384 - | histidyl-tRNA synthetase TERM 1059 1441878 - 1441892 + g 89 -5.6 -5.24449 | overlap 1441853 1441879 CCGCGGCAGCCGGGC GCGCAG TTT CTGCGG TTTTTTCGGTTTCTC Rpal_1370 1442128 - 1443474 + | Beta-alanine--pyruvate transaminase TERM 1060 1443815 - 1443767 - g 93 -19.5 -2.78463 | AGGCCGGCGATCAGA TCGCCGACCTGTCGCGCGGTACC GCC GATCTCGCCCGCCAGGTCGGCGA ATTCGGCCGGCGGCT Rpal_1371 1443571 - 1445136 + | diguanylate phosphodiesterase Rpal_1372 1445149 - 1446003 + | HAD-superfamily hydrolase, subfamily IIA Rpal_1373 1448098 - 1446035 - | hypothetical protein TERM 1061 1447098 - 1447147 + g 83 -13.5 -3.85698 | TGCTGGAACAGTTCG CGGGTCGGGAAGGCGATCAGCGA CAAT TCGTTGATCGGCGTGCCGTCCTG TTTCTCCGGCGGCCG Rpal_1374 1451090 - 1448265 - | hypothetical protein TERM 1062 1448488 - 1448506 + g 71 -13.8 -2.83715 | GACACGCCGTCGCCG CCGCGCGC CGG GCGCGTGG TGTCGTCATCGTCGG TERM 1063 1449803 - 1449827 + g 74 -12.7 -3.55622 | GCTTCTCCCAGGTGA GGCTGCCGCCG AGG CTGCGGCCGCC TTTGCGCAGCTTCAC TERM 1064 1450634 - 1450675 + g 83 -13.8 -3.85698 | overlap 1450634 GCTGGCGCAGTGACA CC-CGCGCGGTACCGGCC GGCATCAG GGCCGG-ATCGCGCGCGG TTTCTGACAGCGGCG TERM 1065 1450634 - 1450674 + g 71 -14 -2.91276 | gap 1, overlap 1450634 GCTGGCGCAGTGACA CCCGCGCGGTACCGGCC GGCATCAG GGCCGG-ATCGCGCGCG GTTTCTGACAGCGGC Rpal_1375 1452019 - 1451087 - | hypothetical protein Rpal_1376 1453023 - 1452019 - | ATPase associated with various cellular activities AAA_3 TERM 1066 1453043 - 1453061 + H 76 -8.8 -4.17048 | TCTCTCCTGTCCACA CCGGCC GCCGCCG GGCCGG TTGTTTTCACCGGGA TERM 1067 1453341 - 1453289 - g 82 -16.2 -3.33162 | gap 1, opp_overlap 1453340, overlap 1453290 GAGTTCACCGCACAA TCTCGACGGC-CTCACCGAGGCCGC GCGG GAGGCCGCGGCGAGCGCCGCCAAGG GCAAGGGCTTGCCGC TERM 1068 1453340 - 1453290 - g 93 -19.7 -2.59683 | gap 1, overlap 1453289 AGTTCACCGCACAAT CTCGACGGC-CTCACCGAGGCCGC GCGG GAGGCCGCGGCGAGCGCCGCCAAG GGCAAGGGCTTGCCG Rpal_1377 1453257 - 1453868 + | protein of unknown function DUF1285 Rpal_1378 1453865 - 1454542 + | NUDIX hydrolase Rpal_1379 1454539 - 1454802 + | hypothetical protein Rpal_1380 1454799 - 1456055 + | Polynucleotide adenylyltransferase region TERM 1069 1456158 - 1456127 - T 82 -10.8 -4.07568 | opp_overlap 1456129 1456141, overlap 1456129 GGCTCGTCCGGAAAA TACGCGACCGCG TGCTGATC CGCGGCCGCGTC AGTTATGGCGAAGAC TERM 1070 1456156 - 1456129 - T 81 -13.4 -3.63744 | opp_overlap 1456129 1456141, overlap 1456127 CTCGTCCGGAAAATA CGCGACCGCG TGCTGATC CGCGGCCGCG TCAGTTATGGCGAAG Rpal_1381 1456412 - 1456185 - | hypothetical protein Rpal_1382 1457122 - 1456490 - | hypothetical protein TERM 1071 1456633 - 1456616 - G 72 -6.9 -4.18018 | overlap 1456617 CGGTTGCAGCGAAAA CCGCTCG AACT CGAGCGC CGCAAACTCTTCCGG Rpal_1383 1457588 - 1457133 - | tRNA/rRNA methyltransferase (SpoU) Rpal_1384 1457865 - 1458392 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Rpal_1385 1458433 - 1460499 + | cytochrome c1 TERM 1072 1460526 - 1460553 + F 77 -12.8 -3.551 | opp_overlap 1460533, overlap 1460533 ACCAACACAACGAGA CAGGAAAGCCCC TTCG GGGGCTTTTTTG TTGTCTGCATTCCGG TERM 1073 1460546 - 1460533 - f 74 -9.5 -3.91027 | opp_overlap 1460526 1460533 CAACGAGACAGGAAA GCCCC TTCG GGGGC TTTTTTGTTGTCTGC TERM 1074 1460533 - 1460546 + F 100 -9.5 -5.60689 | opp_overlap 1460533, overlap 1460526 CAACGAGACAGGAAA GCCCC TTCG GGGGC TTTTTTGTTGTCTGC Rpal_1386 1460658 - 1461332 + | Carboxymethylenebutenolidase Rpal_1387 1461423 - 1461641 + | hypothetical protein TERM 1075 1461710 - 1461750 + T 100 -23.5 -3.63922 | overlap 1461710 1461711 CCGATGCGATCGTCT GCAACGCCCCGTTTCCGAT GCG ATCGGAAATGGGGCGTTGG TCTTTTCGGGGGCAT TERM 1076 1461710 - 1461752 + T 100 -17.3 -4.0896 | gap 2, overlap 1461710 1461711 CCGATGCGATCGTCT G--CAACGCCCCGTTTCCGAT GCG ATCGGAAATGGGGCGTTGGTC TTTTCGGGGGCATTT TERM 1077 1461711 - 1461749 + T 100 -27 -2.78032 | overlap 1461710 1461710 CGATGCGATCGTCTG CAACGCCCCGTTTCCGAT GCG ATCGGAAATGGGGCGTTG GTCTTTTCGGGGGCA Rpal_1388 1462591 - 1461815 - | short-chain dehydrogenase/reductase SDR Rpal_1389 1463226 - 1462588 - | pyridoxamine 5'-phosphate oxidase Rpal_1390 1463350 - 1463760 + | hypothetical protein Rpal_1391 1463880 - 1464848 + | heat shock protein DnaJ domain protein TERM 1078 1464927 - 1464876 - f 71 -12.8 -3.07994 | gap 1, opp_overlap 1464879, overlap 1464879 CGGAATTTGACGCAA GTAGCGGCCTCGGTGCGGGGGATCA GCG CGCAACCCCGC-CCGAGGCCGCTTG CGTCGATCGGCGGAT TERM 1079 1464879 - 1464924 + F 90 -18.4 -3.07816 | gap 1, opp_overlap 1464876 1464879 AATTTGACGCAAGTA GCGGCCTCGGTGCGGGG GATCAGCGCGCAA CCCCGC-CCGAGGCCGC TTGCGTCGATCGGCG TERM 1080 1464924 - 1464879 - f 87 -18.9 -2.7556 | gap 1, opp_overlap 1464879, overlap 1464876 AATTTGACGCAAGTA GCGGCCTCGGTGCGGGGGATCA GCG CGCAACCCCGC-CCGAGGCCGC TTGCGTCGATCGGCG Rpal_1392 1465247 - 1466068 + | short-chain dehydrogenase/reductase SDR Rpal_1393 1466177 - 1466770 + | Phosphoglycerate mutase Rpal_1394 1466905 - 1467993 + | Chorismate synthase Rpal_1395 1468097 - 1469296 + | adenylate/guanylate cyclase Rpal_1396 1469783 - 1469472 - | ATP-dependent Clp protease adaptor protein ClpS TERM 1081 1470484 - 1470472 - g 80 -9.1 -4.25104 | GCTGTTCGAGCAAAA CCCGT ATC ACGGG CTGCGACGGGTGATC Rpal_1397 1470029 - 1470865 + | protein of unknown function DUF1194 Rpal_1398 1472141 - 1470990 - | iron-containing alcohol dehydrogenase TERM 1082 1472254 - 1472280 + r 86 -16.6 -3.13403 | opp_overlap 1472245, overlap 1472253 GCAATACCCTGCTGT CCGGACGGCG CAGGAAA CGCCGTCCGG TATTGCTGCGAGCGA Rpal_1399 1473851 - 1472331 - | Aldehyde Dehydrogenase TERM 1083 1473031 - 1473053 + g 70 -10.6 -3.53761 | opp_overlap 1473045 1473046 TCTTCGGCAGTGACG TCGCCGAAGA AAA TGTTCGGCGA TTTGCCGCCGAGTTC TERM 1084 1474527 - 1474488 - g 76 -15.1 -3.16191 | gap 1 CGACACCGGCACCAA TGCGATCGGCACGGCGCT GGTCG AGCGCCA-GCCGATTGCA GTGCACGGCGCCGAA Rpal_1400 1474090 - 1475979 + | GAF modulated sigma54 specific transcriptional regulator, Fis family Rpal_1401 1477423 - 1476020 - | Carotenoid oxygenase TERM 1085 1476866 - 1476884 + g 71 -12.4 -3.28712 | GAACGACATCGTACG CGTCAGCG GGC CGCTGGCG TTGTAGCCGAAGAAC Rpal_1402 1478844 - 1477465 - | hypothetical protein TERM 1086 1477803 - 1477789 - G 72 -11.4 -3.53224 | GATCTCGTTGGCAAA GCGCTG CAC CAGCGC GTCGTCGATCGAGCC TERM 1087 1478110 - 1478146 + g 72 -11.5 -3.53444 | CCATTCGCGCGCGCG TTCGGCCTCGTGCTCGG GTG CCGACTGCGAGTCCGGA TTTGGCACCAGGTCG Rpal_1403 1479946 - 1478837 - | hypothetical protein Rpal_1404 1481017 - 1479965 - | hypothetical protein TERM 1088 1480238 - 1480253 + g 75 -6.8 -4.30576 | gap 1, opp_overlap 1480206, overlap 1480236 GAAGGTGACGGTCCA GC-GCGC ACC GCGCAGC TTTTCGTAATACGCG TERM 1089 1480281 - 1480265 - G 74 -15.1 -3.01924 | opp_overlap 1480259 CAGCTTTTCGTAATA CGCGGCC GGA GGCCGCG TGAGGGTGCGTTCCA Rpal_1405 1482186 - 1481191 - | alpha/beta hydrolase fold Rpal_1406 1483911 - 1482406 - | MlrC domain protein Rpal_1407 1485699 - 1484047 - | ABC transporter related Rpal_1408 1486698 - 1485808 - | binding-protein-dependent transport systems inner membrane component TERM 1090 1486664 - 1486634 - G 74 -10.2 -3.81951 | overlap 1486638 GTCGACAGCAGGAAA CCGAGCCGCGGACG CAT CGGGCGCGGCACAG GAAGGGTCGGTTCGG Rpal_1409 1487653 - 1486712 - | binding-protein-dependent transport systems inner membrane component TERM 1091 1486947 - 1486983 + g 79 -10.8 -3.95852 | opp_overlap 1486916 1486909 GTGATTACCGGGACC GCCGCATTGC-GCAGCGC GTG GCGCAGCAGC-ACGCGGC TTTCGTTGATGCCCT Rpal_1410 1488948 - 1487818 - | peptidase M20 Rpal_1411 1489200 - 1490813 + | extracellular solute-binding protein family 5 TERM 1092 1490887 - 1490845 - T 81 -14 -3.54741 | opp_overlap 1490852, overlap 1490848 CATCATTCGTCGAAA CATCATCGCGCCGTCCTGCC TCC AGCAGGGCGGCGCTTTGCTG TGCGGAGCTTGCGCC TERM 1093 1490884 - 1490848 - T 74 -14.3 -2.60813 | opp_overlap 1490852, overlap 1490845 CATTCGTCGAAACAT CATCGCGCCGTCCTGCC TCC AGCAGGGCGGCGCTTTG CTGTGCGGAGCTTGC TERM 1094 1490852 - 1490880 + T 100 -19.6 -3.83026 | opp_overlap 1490848 1490845 CGTCGAAACATCATC GCGCCGTCCTGC CTCCA GCAGGGCGGCGC TTTGCTGTGCGGAGC TERM 1095 1491305 - 1491287 - T 100 -13.1 -5.06414 | opp_overlap 1491287 TCCGCCCAACAAAAA GCCCGGC GCGAA GCCGGGC TCGATTGGCGGGGTG Rpal_1412 1491988 - 1491353 - | hypothetical protein TERM 1096 1491667 - 1491714 + g 70 -11 -3.53012 | overlap 1491670 CGGGCGCCGCGGCTT CGGGGGCCGGCGTCGCGGCGGT CTCG ACCGCCGCCGGGGCGGCGCTGG TTTCCACGGCGGCCG Rpal_1413 1492473 - 1493489 + | putative signal-transduction protein with CBS domains Rpal_1414 1494331 - 1493540 - | hypothetical protein TERM 1097 1493648 - 1493633 - G 86 -9 -4.57569 | CCAGCCGTCGAAAAA CACCAC GATG GTGGTG ATCAGTCCGGTGATC Rpal_1415 1495292 - 1494360 - | CHAD domain containing protein TERM 1098 1494393 - 1494414 + g 70 -11.5 -3.40191 | ATCCTCTGCAAGCTT GGCGGCTGC CTTG GCGGCTGCC TTCATCTGTTGTCGG TERM 1099 1495237 - 1495272 + g 75 -11.8 -3.62597 | gap 1, opp_overlap 1495237, overlap 1495238 TGCGACAGAACGATA TCGTG-GGCCGGGCCGG TGC CCGGCTTGGCCGTACGC TTCTTGAGAACTCGA TERM 1100 1495238 - 1495271 + g 75 -15.3 -2.77344 | gap 1, opp_overlap 1495237, overlap 1495237 GCGACAGAACGATAT CGTG-GGCCGGGCCGG TGC CCGGCTTGGCCGTACG CTTCTTGAGAACTCG Rpal_1416 1495722 - 1495399 - | hypothetical protein TERM 1101 1495658 - 1495690 + g 71 -12.6 -3.34233 | overlap 1495650 TGTTTGTCCGGCCCG CGCTCCGGCGCCGG TTTGC TCGGAGCCGGGGTG TTCTGGACGTTGTCC Rpal_1417 1495991 - 1497814 + | indolepyruvate ferredoxin oxidoreductase, alpha subunit Rpal_1418 1497811 - 1498755 + | pyruvate ferredoxin/flavodoxin oxidoreductase TERM 1102 1498907 - 1498931 + G 78 -15.7 -3.15544 | opp_overlap 1498889 GGAGCGGCTGTCGAC CATGCTGCCGG CCG CCGGCGGCGTG TTCATCCAGATGGAA Rpal_1419 1498752 - 1499915 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein TERM 1103 1500740 - 1500690 - g 71 -9.5 -3.78934 | gap 2, overlap 1500687 1500702 TCTGGCTCAGAACAA CCGGC-CGGAATACGGC-GCGGCCC TGC GCGCCGCTGCCGCCGCACGCGCCGG CAAGTGACGGGGAGA Rpal_1420 1499917 - 1500747 + | thiamine pyrophosphate domain protein TPP-binding Rpal_1421 1500762 - 1501322 + | pyruvate ferredoxin/flavodoxin oxidoreductase Rpal_1422 1501346 - 1502680 + | Phenylacetate--CoA ligase TERM 1104 1502723 - 1502772 + F 83 -15.4 -3.1364 | gap 2, opp_overlap 1502728 1502732, overlap 1502728 1502728 1502730 CTTTGCGATGCAGCA TAAAAG-TA-ATCGACACGCGCCT TGAC AGGCGCGTGTCGATCTAACTTTAA TTAACTGATTGAGTA TERM 1105 1502728 - 1502766 + F 79 -15.5 -2.95919 | gap 1, opp_overlap 1502728 1502732, overlap 1502728 1502723 1502730 CGATGCAGCATAAAA GTA-ATCGACACGCGCCT TGAC AGGCGCGTGTCGATCTAA CTTTAATTAACTGAT TERM 1106 1502766 - 1502728 - f 100 -15.5 -4.4767 | gap 1, opp_overlap 1502728 1502723 1502728 1502730, overlap 1502732 CGATGCAGCATAAAA GTA-ATCGACACGCGCCT TGAC AGGCGCGTGTCGATCTAA CTTTAATTAACTGAT TERM 1107 1502728 - 1502767 + F 91 -15.3 -3.94404 | gap 2, opp_overlap 1502728 1502732, overlap 1502723 1502728 1502730 CGATGCAGCATAAAA G-TA-ATCGACACGCGCCT TGAC AGGCGCGTGTCGATCTAAC TTTAATTAACTGATT TERM 1108 1502730 - 1502763 + F 90 -19.7 -2.71246 | opp_overlap 1502728 1502732, overlap 1502728 1502728 1502723 ATGCAGCATAAAAGT AATCGACACGCGCCT TGAC AGGCGCGTGTCGATC TAACTTTAATTAACT TERM 1109 1502761 - 1502732 - f 100 -22.3 -3.77302 | opp_overlap 1502730 1502728 1502728 1502723, overlap 1502728 GCAGCATAAAAGTAA TCGACACGCGCCT TGAC AGGCGCGTGTCGA TCTAACTTTAATTAA Rpal_1423 1502890 - 1503762 + | inner-membrane translocator TERM 1110 1503849 - 1503871 + G 72 -11.9 -3.54951 | opp_overlap 1503824 TGGTACGCCGTCTTG GTCGCGGCG CTGAT CGCCGCGCC TTATGTGCTGGAATC Rpal_1424 1503765 - 1504910 + | inner-membrane translocator Rpal_1425 1504907 - 1505668 + | ABC transporter related Rpal_1426 1505672 - 1506421 + | ABC transporter related TERM 1111 1506440 - 1506480 + G 82 -17.5 -3.05844 | opp_overlap 1506427 GACCACGCTGGCGGG CCGCGTCATCGCGGCGCTG CGC CAGCACGGCGATGCCGTGG TGTTGCGCTGGAAGC Rpal_1427 1506405 - 1508105 + | AMP-dependent synthetase and ligase TERM 1112 1509099 - 1509074 - g 81 -3.9 -4.98436 | overlap 1509076 1509098 CGAAGACTACAAAAA GATGTTCGGCA TCGA TGCCAACCAGC AGTCGACCGCCGGCT Rpal_1428 1508145 - 1509350 + | Extracellular ligand-binding receptor TERM 1113 1509377 - 1509397 + T 100 -14 -5.38054 | opp_overlap 1509377 TGTCTCAAACCCAAA TGCCCGGC CTCGC GCCGGGCA TTTTTCTTTCTAGGA TERM 1114 1509397 - 1509377 - T 86 -14 -3.84451 | opp_overlap 1509377 TGTCTCAAACCCAAA TGCCCGGC CTCGC GCCGGGCA TTTTTCTTTCTAGGA Rpal_1429 1510730 - 1509534 - | acyl-CoA dehydrogenase domain protein Rpal_1430 1511885 - 1510749 - | acyl-CoA dehydrogenase domain protein TERM 1115 1511034 - 1511090 + g 76 -8.6 -4.17491 | overlap 1511037 1511037 GTCGACCTGCACCGA CATGTCGGTCAGCCGAT-GCCGCACCAC CTG GTTG-GCGGCGAGCGGCCGGCCGAACTG TTTTCGAACTTTGGT Rpal_1431 1512737 - 1511889 - | Enoyl-CoA hydratase/isomerase TERM 1116 1513678 - 1513734 + G 74 -15.8 -2.63301 | TGGTGGCACCGGGCA TCGCCG-AGGCGCTGCTGGCGACCGCGC TCG GCCTGGTCGCC-GCGGTGCCGGCGGTGG TGATCTACAACTATC Rpal_1432 1513089 - 1513862 + | tonB-system energizer ExbB Rpal_1433 1513867 - 1514304 + | TonB system transport protein ExbD TERM 1117 1515140 - 1515158 + G 70 -6.6 -4.1899 | CCAATCGTCGCTCAG CTTCACCG TGC CGGTGCGG TTTTCGCTGCAGTGA Rpal_1434 1514301 - 1515173 + | TonB family protein TERM 1118 1515178 - 1515210 + T 75 -14 -3.10344 | CGCTGCAGTGAGTGA GCGCGCAGGCCGGC GTCAG GCCTGCCCGTGCGC TGTCTTCACTGCGGC Rpal_1435 1516704 - 1515193 - | AMP-dependent synthetase and ligase TERM 1119 1515322 - 1515351 + g 71 -14.3 -2.94144 | overlap 1515320 1515329 CGATGCGACGAATTC GGCGAGGGCGTCG GCGG CGATGCTTTCGCC TGGTTTGCATACGCA Rpal_1436 1517035 - 1518222 + | hypothetical protein TERM 1120 1518561 - 1518516 - g 73 -11.1 -3.71284 | gap 1, overlap 1518519 CGCCTATGAAGAGAA GCAGGCTGGCGCCGACTACGTC GCC AACATCGCCGACGCCATCC-GC CGCGCTTCGCGCGAG Rpal_1437 1518238 - 1518843 + | hypothetical protein Rpal_1438 1518830 - 1519222 + | protein of unknown function DUF1469 Rpal_1439 1519219 - 1519920 + | hypothetical protein TERM 1121 1520256 - 1520272 + G 75 -4.4 -4.59342 | gap 1, overlap 1520231 GGCGGCACTTATAGG CGGATCG GCGA CGA-CCG TTTGTTTCTGGTCGC Rpal_1440 1520112 - 1521065 + | ribonuclease BN Rpal_1441 1521988 - 1521062 - | two component transcriptional regulator, LuxR family Rpal_1442 1525346 - 1521978 - | integral membrane sensor hybrid histidine kinase TERM 1122 1522574 - 1522524 - G 78 -14.7 -3.23692 | GACCAGCACGATGAA GCCGAGC-GGCGCCAGCGCATCCTG CAG CAGGCCGCGCTG-CGCCGGATCGTC GTCAGTCACCAGGAT TERM 1123 1524325 - 1524306 - G 79 -4.3 -4.83615 | CAGCCGCGAGAAAAA GTTCGAC CAGGCT ATCGAAC CCGCATAGGCGTTGG TERM 1124 1525387 - 1525402 + H 86 -11.8 -4.13767 | opp_overlap 1525376 ACTAGCGCCGATCCG CCGGCG ACGT CGCCGG TTTTGCCGTCACGGC Rpal_1443 1525603 - 1526865 + | urea ABC transporter, urea binding protein TERM 1125 1527061 - 1527103 + G 72 -6.8 -4.24204 | overlap 1527067 TTCGATTGGTGATCT CGGGGCGATCTTCGCGATGC AGG GCTTCGCGGGGCTCATTCTG TTTTCCGTCTACGTG Rpal_1444 1527032 - 1527958 + | urea ABC transporter, permease protein UrtB Rpal_1445 1527973 - 1529124 + | urea ABC transporter, permease protein UrtC Rpal_1446 1529135 - 1529890 + | urea ABC transporter, ATP-binding protein UrtD Rpal_1447 1529901 - 1530590 + | urea ABC transporter, ATP-binding protein UrtE TERM 1126 1530827 - 1530791 - g 73 -9.4 -3.99374 | gap 1 TTTCATCAAGAACAA CGACTCGGCCGATGACG TTCG CGACATCGACCT-GTCG ATCGTGCACTTCCTG Rpal_1448 1530627 - 1531856 + | Formamidase TERM 1127 1531896 - 1531862 - f 70 -7.2 -4.02535 | gap 2, opp_overlap 1531865, overlap 1531863 GGATAAGTAACCAAA CGTCGTCATGGCCGGG CTTGT CCCGGCCATC-C-ACG TCTTAACTGCTGAGC TERM 1128 1532370 - 1532360 - g 86 -8.2 -4.72272 | overlap 1532361 TTCGGGCATCAAAAA GCCG GCC CGGC TGCAGACCCGCACCA Rpal_1449 1532094 - 1532438 + | regulatory protein, FmdB family Rpal_1450 1533350 - 1532553 - | cobalamin 5'-phosphate synthase TERM 1129 1533621 - 1533678 + H 73 -8.9 -4.0251 | gap 1 AACGACATAGCGACG GC-CGGACGATGTCCGCTGCATTGCGCC TGT GGCTCAAGGCGGCGATCTGCGTCTGCGC TTTCGTTGTGCTGGT Rpal_1451 1533629 - 1533952 + | hypothetical protein TERM 1130 1534162 - 1534178 + F 70 -7.9 -4.03234 | overlap 1534163 CGAGGGAGGCGTTCC GGCTGCG GGC CGCAGCG TTTCTGTCGAGCCGA TERM 1131 1534260 - 1534243 - g 71 -9.1 -3.84712 | overlap 1534254 CAAGCCGACATCAAA GGCCCGA ACGA TCAGGCC TCCGACGAGATGTGG TERM 1132 1534278 - 1534297 + G 73 -13.6 -3.29144 | opp_overlap 1534271 CGACGAGATGTGGCA CGCGATCG ATGC CGATCGCG TTCTCACCGGCCTCG TERM 1133 1534398 - 1534408 + G 72 -6.8 -4.26792 | overlap 1534391 GCCAGAGCCGCCGCG TCGC TCG GCGA TTTTGCGGTTTCTGT TERM 1134 1535603 - 1535649 + G 71 -15.1 -2.59191 | gap 1, overlap 1535602 CGACCCGCCACGCCA CCGACTCCGGCGCGCAGGTGAT CTTC GTCAAGGGCGCGCCGGAG-CGG CTTCTGGCGATGTGC TERM 1135 1536729 - 1536766 + G 82 -15.5 -3.45023 | gap 1, opp_overlap 1536716 CAGCTCGATCTCGCT GCGCGGCGCGC-TCGGCA CCA TGCCGGTGCTGGCCGCGC TTGTCGTGGTGATCG Rpal_1452 1534213 - 1536957 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC Rpal_1453 1537046 - 1537951 + | UspA domain protein TERM 1136 1538833 - 1538881 + G 81 -14.6 -3.57144 | gap 1, opp_overlap 1538832 CGGCTCCGAAGGCAT CCT-GGGCGTGATTTCGGCAGCG TGGA TGCGGCTGCAATCGCGCCCCAGG TTTCGCGCTGGCGCC Rpal_1454 1538048 - 1539643 + | FAD linked oxidase domain protein Rpal_1455 1540079 - 1539615 - | hypothetical protein Rpal_1456 1540311 - 1540586 + | protein of unknown function DUF1153 TERM 1137 1540614 - 1540654 + F 84 -11.2 -4.14615 | gap 2, opp_overlap 1540622 CAGGTTTTGACGTTT TGACGAAAGCCGGC--CCCG TTT CGGGAAGCCGGCTTTCAGCA TTTTCAAGGGTTTTT TERM 1138 1540646 - 1540622 - f 74 -10 -3.72893 | gap 2, opp_overlap 1540614 GACGTTTTGACGAAA GCCGGC--CCCG TTT CGGGAAGCCGGC TTTCAGCATTTTCAA TERM 1139 1541672 - 1541650 - g 75 -12 -3.63073 | CAGACCCGCGAAGAA TCCGCCGC GACTTCG GCGGCGGA CGGCCAGGTCACCGT Rpal_1457 1540786 - 1542402 + | flagellar M-ring protein FliF Rpal_1458 1542409 - 1543497 + | flagellar motor switch protein FliG TERM 1140 1543823 - 1543797 - g 78 -13.7 -3.53012 | opp_overlap 1543813, overlap 1543813 GCCGCGGCGCGCAAA CTCTGCGGCGA ACTGA TCGCCGCCGAG CCGCTGGCCGAGATC Rpal_1459 1543497 - 1544123 + | flagellar assembly protein H Rpal_1460 1544141 - 1544488 + | flagellar motor switch protein FliN TERM 1141 1544502 - 1544490 - f 74 -10.5 -3.74345 | AGGCAGACACCTAAA CGCGC AGC GCGCG GGACTCGCGCGGCAG Rpal_1461 1544536 - 1545915 + | two component, sigma54 specific, transcriptional regulator, Fis family TERM 1142 1545972 - 1546019 + T 100 -25 -3.01712 | gap 1 GGCCCCCTCTGGAAG GTCTCTCCTCCGCCCCTCCTCCT GAA AGGAGGTGGGGCGGAG-AGGGGC TATTAGGCAGCAAAG Rpal_1462 1546442 - 1546287 - | putative exported protein of unknown function Rpal_1463 1546775 - 1546497 - | hypothetical protein Rpal_1464 1547081 - 1546812 - | hypothetical protein Rpal_1465 1547310 - 1548137 + | transglutaminase domain protein TERM 1143 1548177 - 1548203 + F 79 -9.4 -4.10672 | opp_overlap 1548176, overlap 1548166 1548178 GCCGTCGGCACCAAG CCCGGTTCCGAT TCA ATCGGAGTCGGA TTTGCTTTAGCTTGC TERM 1144 1548178 - 1548202 + F 71 -12.9 -3.0568 | opp_overlap 1548176, overlap 1548166 1548177 CCGTCGGCACCAAGC CCGGTTCCGAT TCA ATCGGAGTCGG ATTTGCTTTAGCTTG TERM 1145 1548349 - 1548308 - g 70 -10.7 -3.54741 | opp_overlap 1548336 GACGAGGCGCTGAAA GCCGTCGGCGCCTGGCTCA AGGC CAAGCCCGGCCGCAACGGC ACGCCGCTGGTGTTC TERM 1146 1548697 - 1548721 + G 82 -12.1 -3.92542 | CGGCGATCCGGCGCA GCTGCCGCC AATCCAG GGCGGCGGC TTCTTTACCAATGCC Rpal_1466 1548269 - 1549378 + | exodeoxyribonuclease V Rpal_1467 1550163 - 1549468 - | Methyltransferase type 11 Rpal_1468 1550446 - 1550973 + | Ferritin Dps family protein Rpal_1469 1551757 - 1551233 - | hypothetical protein TERM 1147 1552002 - 1551979 - R 84 -15.2 -3.25986 | opp_overlap 1551980, overlap 1551965 1551980 AGATGATATGAGTAA GGCCGCCGCG ACTA CGCGGCGGCT TTCTTCGCGCGCATC TERM 1148 1551980 - 1552001 + r 100 -18.7 -4.15222 | opp_overlap 1551979 1551965 1551980 GATGATATGAGTAAG GCCGCCGCG ACTA CGCGGCGGC TTTCTTCGCGCGCAT TERM 1149 1552001 - 1551980 - R 87 -18.7 -2.5511 | opp_overlap 1551980, overlap 1551979 1551965 GATGATATGAGTAAG GCCGCCGCG ACTA CGCGGCGGC TTTCTTCGCGCGCAT Rpal_1470 1553183 - 1551990 - | carbamoyl-phosphate synthase, small subunit Rpal_1471 1553332 - 1554036 + | alpha/beta hydrolase fold Rpal_1472 1554194 - 1554649 + | GatB/YqeY TERM 1150 1554818 - 1554787 - f 83 -15.9 -3.15768 | ACGAAAACTGCAAGA TTCCGGGATCGCG GTCGCT CGCGAACCCGGAA TGACTGATCAAACTC Rpal_1473 1555234 - 1556082 + | hypothetical protein Rpal_1474 1556669 - 1556196 - | Activator of Hsp90 ATPase 1 family protein Rpal_1475 1556976 - 1556662 - | transcriptional regulator, ArsR family TERM 1151 1557416 - 1557434 + G 75 -11.6 -3.71848 | GACCGATCAGCCGCC GCCTCCGC CGC GCGGTGGC TTCTTCCTGCAGGGC Rpal_1476 1557105 - 1557722 + | Lysine exporter protein (LYSE/YGGA) Rpal_1477 1558645 - 1557848 - | N-formylglutamate amidohydrolase Rpal_1478 1558807 - 1559214 + | AIG2 family protein Rpal_1479 1559473 - 1559231 - | hypothetical protein Rpal_1480 1559930 - 1561939 + | DNA primase TERM 1152 1562095 - 1562118 + F 86 -13.1 -3.96531 | overlap 1562114 GAGCGGGATCGTGCG GGGTGGCGC AGGCGG GCGCCGCCC TTTGTGCGTCTCTCC Rpal_1481 1562199 - 1564295 + | RNA polymerase, sigma 70 subunit, RpoD family TERM 1153 1564305 - 1564336 + F 86 -15.2 -3.56092 | gap 1, opp_overlap 1564301 1564296 AACTAACGAGAGTGA GGTGGGCACATGCGC GAA GCGCCT-TGCCCACC TTTCACGCCTGATGA Rpal_1482 1564368 - 1564646 + | hypothetical protein TERM 1154 1564700 - 1564712 + T 74 -4.7 -4.64676 | overlap 1564671 1564701 CGCTTGCCGACCTGA ACCGC TTT GCGGC TTTTCTTCAGGATCA Rpal_1484 1565370 - 1565047 - | plasmid maintenance system antidote protein, XRE family Rpal_1485 1565670 - 1565380 - | plasmid maintenance system killer Rpal_1487 1569014 - 1570777 + | diguanylate cyclase Rpal_1488 1571880 - 1571029 - | short-chain dehydrogenase/reductase SDR Rpal_1489 1573184 - 1572069 - | Beta-ketoacyl-acyl-carrier-protein synthase I Rpal_1490 1573482 - 1573823 + | hypothetical protein Rpal_1491 1574095 - 1574658 + | intracellular protease, PfpI family TERM 1155 1574761 - 1574726 - T 73 -12.6 -3.23274 | gap 1, opp_overlap 1574732, overlap 1574729 1574732 GTTCCGATAAGCGAA CAACGACCGCGCCGGTG GCT CATCGGCGCGGTT-TTG ATGCGAGAGGAGCCG TERM 1156 1574759 - 1574729 - T 76 -11 -3.75766 | opp_overlap 1574732, overlap 1574726 1574732 CCGATAAGCGAACAA CGACCGCGCCGGTG GCT CATCGGCGCGGTTT TGATGCGAGAGGAGC TERM 1157 1574732 - 1574756 + T 100 -19.3 -4.25104 | opp_overlap 1574732 1574729 1574726 ATAAGCGAACAACGA CCGCGCCGGTG GCT CATCGGCGCGG TTTTGATGCGAGAGG TERM 1158 1574756 - 1574732 - T 87 -17.1 -2.96731 | opp_overlap 1574732, overlap 1574729 1574726 ATAAGCGAACAACGA CCGCGCCGGTG GCT CATCGGCGCGG TTTTGATGCGAGAGG Rpal_1492 1575219 - 1574848 - | hypothetical protein Rpal_1493 1575446 - 1576264 + | lytic murein transglycosylase TERM 1159 1576285 - 1576265 - T 83 -15.4 -3.22298 | opp_overlap 1576273 1576273, overlap 1576227 CTGATCGAGCAGTAA GCGCCCGG CTAAT CCGGGCGC GCGGCACCGTCACAT TERM 1160 1576273 - 1576330 + T 83 -16.2 -2.86785 | opp_overlap 1576265, overlap 1576273 1576289 GCAGTAAGCGCCCGG CTAATCCGGGCGCGCGGCACCGTCAC ATCGAG GTGGCGGTGCTGTTGGCCCGGACCAG CTTGTTGATCTGGTC TERM 1161 1576273 - 1576331 + T 74 -10.2 -3.78778 | gap 1, opp_overlap 1576265, overlap 1576273 1576289 GCAGTAAGCGCCCGG -CTAATCCGGGCGCGCGGCACCGTCAC ATCGAG GTGGCGGTGCTGTTGGCCCGGACCAGC TTGTTGATCTGGTCG TERM 1162 1576289 - 1576314 + T 71 -12.6 -3.01712 | overlap 1576273 1576273 TAATCCGGGCGCGCG GCACCGTCAC ATCGAG GTGGCGGTGC TGTTGGCCCGGACCA Rpal_1494 1577008 - 1576295 - | flagellar hook capping protein Rpal_1495 1578619 - 1577021 - | flagellar hook-length control protein TERM 1163 1578743 - 1578761 + H 77 -13.2 -3.54424 | CGTTTGCCACGCTAT TTCTGCCG CAG CGGCAGAA TTTGCCGCGGTCGCG Rpal_1496 1578920 - 1580125 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Rpal_1497 1580145 - 1580783 + | Phosphatidylethanolamine N-methyltransferase TERM 1164 1580800 - 1580818 + F 82 -14.6 -3.2963 | CTCGTGCCGCCGGAA CGTGGCGA GCC TCGCCACG TTGTCCGGGCATGAT Rpal_1498 1580829 - 1581167 + | conserved hypothetical protein; putative signal peptide Rpal_1499 1581839 - 1581477 - | hypothetical protein TERM 1165 1582283 - 1582270 - g 73 -9.5 -3.92324 | CGCTTGAACATCAAA GGCCG TCGC CGGCC CAAAAGAGAGCAAAG TERM 1166 1582591 - 1582620 + G 71 -15.1 -2.64243 | gap 1, opp_overlap 1582606 TCGTGCAGACGCGCG CGCTGGTCGATGCA AGC TGCATCGGCC-GCG TGCTCTCGCGTATGA Rpal_1500 1581951 - 1582931 + | integrase family protein TERM 1167 1584517 - 1584481 - g 78 -14.4 -3.53012 | gap 1, overlap 1584454 1584453 GCCGCGCGCTGGAAA CAGCGCGCGGGC-ACCG AGCG CGACCGCCCGCGCACCG CTCAGAGCTTCTGCG Rpal_1501 1583161 - 1584702 + | N-6 DNA methylase Rpal_1502 1584699 - 1585880 + | restriction modification system DNA specificity domain TERM 1168 1586200 - 1586190 - g 70 -2.4 -4.5774 | overlap 1586191 GATCAAGAACCAAAA TGCG CTT CGCC AGCACCTCTGCAAAA Rpal_1503 1585990 - 1586523 + | hypothetical protein TERM 1169 1587004 - 1586989 - T 71 -8.2 -3.84825 | TTCAGCCATATCAAA GCGCAG CAGG CCGCGC TCGACGCCAAGAACG Rpal_1506 1590229 - 1589993 - | transcriptional regulator, XRE family TERM 1170 1590061 - 1590050 - G 89 -2.2 -5.34309 | ACCATCAAACAAAAA CTCA ATTC CGAG TTGCTCCAGCGCCGC TERM 1171 1590192 - 1590214 + g 89 -11.2 -4.20768 | overlap 1590195 TGCGACAGATTCAGC CAGGCCCGCG CCG CGCGGACTTG TTCTTTGTTAACCAT TERM 1172 1590195 - 1590211 + g 80 -9.3 -4.21772 | overlap 1590192 GACAGATTCAGCCAG GCCCGCG CCG CGCGGAC TTGTTCTTTGTTAAC Rpal_1507 1590314 - 1591204 + | hypothetical protein Rpal_1508 1591305 - 1591862 + | hypothetical protein Rpal_1509 1591862 - 1592746 + | metallophosphoesterase Rpal_1510 1592780 - 1593634 + | ATPase associated with various cellular activities, AAA_5 Rpal_1511 1593627 - 1594304 + | ATPase associated with various cellular activities AAA_5 TERM 1173 1594734 - 1594761 + F 75 -14.9 -2.71263 | opp_overlap 1594733 1594731 1594734, overlap 1594721 1594755 CGACGTCTGAAATAC CCGGGCAGAGC GGACCA GTTCTGCCCGG TCCTTCCGGCGCATT Rpal_1514 1595621 - 1596736 + | NADH:flavin oxidoreductase/NADH oxidase TERM 1174 1597055 - 1597043 - g 77 -6.9 -4.56914 | opp_overlap 1597048, overlap 1597045 CCACCGAAATGAAAA GCCCC CGC GAGGC CGCCCGCGCGTTTAC Rpal_1515 1597021 - 1597353 + | Carboxymuconolactone decarboxylase Rpal_1516 1597583 - 1598125 + | hypothetical protein Rpal_1517 1598526 - 1600424 + | multi-sensor signal transduction histidine kinase Rpal_1518 1600480 - 1600911 + | response regulator receiver protein Rpal_1519 1600908 - 1601594 + | two component transcriptional regulator, LuxR family TERM 1175 1602027 - 1602040 + G 70 -5.9 -4.18197 | opp_overlap 1602016, overlap 1602026 CAAGGATTGGGGCAG CGGCC AGCC GGTCG TTTTCAGTCACGGCT TERM 1176 1602530 - 1602551 + G 70 -2.2 -4.65895 | gap 1, overlap 1602519 1602531 GGCTGCAGGGCATGA T-GGCCGGC TTTCC GGCGGCCTA TTTTTGCATCAAGGC Rpal_1520 1601971 - 1602792 + | alpha/beta hydrolase fold Rpal_1521 1602954 - 1603475 + | Ferritin Dps family protein Rpal_1522 1603490 - 1604092 + | hypothetical protein TERM 1177 1604278 - 1604239 - T 76 -10.6 -3.85539 | gap 1, opp_overlap 1604273 CACATCGAGATGAAA CGAGAGCGTGCTGCCGATC CCA GGCCGGGAGCGCGC-CTCG AGCTTGCCGCCATGC Rpal_1523 1605057 - 1604215 - | histidine kinase Rpal_1524 1606108 - 1605203 - | transcriptional regulator, AraC family Rpal_1525 1607219 - 1606239 - | RNA polymerase, sigma 32 subunit, RpoH Rpal_1526 1609511 - 1607535 - | bicupin, oxalate decarboxylase family TERM 1178 1608362 - 1608317 - G 87 -17 -3.41051 | gap 1, overlap 1608321 GCACTCGGACGAGAA CCAAC-GATGCTTGCGCGCGA TTATT TCGCACGCAGGCATCAGTCGG GCTCGCCCGGTGCCA TERM 1179 1608357 - 1608321 - G 80 -15.2 -3.47322 | overlap 1608317 TCGGACGAGAACCAA CGATGCTTGCGCGCGA TTATT TCGCACGCAGGCATCA GTCGGGCTCGCCCGG Rpal_1527 1610135 - 1609692 - | Camphor resistance CrcB protein Rpal_1528 1610539 - 1610138 - | Camphor resistance CrcB protein Rpal_1529 1613702 - 1610550 - | acriflavin resistance protein Rpal_1530 1614874 - 1613699 - | efflux transporter, RND family, MFP subunit Rpal_1531 1615272 - 1617002 + | thiamine pyrophosphate protein TPP binding domain protein TERM 1180 1617192 - 1617174 - f 72 -3.9 -4.564 | gap 1, overlap 1617176 AATGCGAAATGAAAA TG-CATCG GTCC CGATGTCA CCACCTGAGAGAGGC Rpal_1532 1617248 - 1619644 + | oxidoreductase alpha (molybdopterin) subunit Rpal_1533 1619663 - 1621060 + | cytochrome bd ubiquinol oxidase subunit I Rpal_1534 1621057 - 1622082 + | cytochrome bd ubiquinol oxidase subunit II Rpal_1535 1622166 - 1622474 + | hypothetical protein Rpal_1536 1622590 - 1622946 + | hypothetical protein Rpal_1537 1623132 - 1623980 + | transcriptional regulator, AraC family Rpal_1538 1624174 - 1624872 + | signal transduction histidine kinase TERM 1181 1625220 - 1625185 - T 77 -12.6 -3.63515 | gap 1, opp_overlap 1625189, overlap 1625189 CGCTATGCCGAACAA CGAAGGGAGCGCCG-CA ATG TGTCGGCGCTCCCTTTT GGTTCGATCTGCCGT TERM 1182 1625216 - 1625189 - T 95 -17.8 -3.53712 | gap 1, opp_overlap 1625189, overlap 1625185 ATGCCGAACAACGAA GGGAGCGCCG-CA ATG TGTCGGCGCTCCC TTTTGGTTCGATCTG TERM 1183 1625189 - 1625216 + T 100 -17.8 -4.44548 | gap 1, opp_overlap 1625189 1625185 ATGCCGAACAACGAA GGGAGCGCCG-CA ATG TGTCGGCGCTCCC TTTTGGTTCGATCTG Rpal_1539 1625468 - 1625238 - | conserved hypothetical protein; putative signal peptide TERM 1184 1625763 - 1625777 + G 100 -12.8 -4.37092 | opp_overlap 1625760 TATTCGACCACAGCG GCCGCG AGG CGCGGC TTTTCTGGCACGGCT Rpal_1540 1625741 - 1627792 + | Fusaric acid resistance protein conserved region Rpal_1541 1627806 - 1628012 + | protein of unknown function DUF1656 TERM 1185 1628419 - 1628446 + G 86 -17.7 -3.05596 | opp_overlap 1628412 1628435 GCAGCAGATCTATGC GGCCGCGGCCG ACATAG CGGCTGCGGCC TTGCGTCAGGCGCTC Rpal_1542 1628009 - 1628950 + | secretion protein HlyD family protein Rpal_1543 1629888 - 1628986 - | transcriptional regulator, AraC family Rpal_1544 1630069 - 1635201 + | ATP-binding region ATPase domain protein TERM 1186 1635577 - 1635544 - g 72 -7.3 -4.1822 | gap 1, overlap 1635564 GGCTACGTCAAGAAA GCCTGCGCGCTG-GTG AAT CACGCGGCGGGGAGGC TGCCGGCGTGGAAGA Rpal_1545 1635331 - 1636788 + | fumarate hydratase, class II Rpal_1546 1636790 - 1638070 + | protein of unknown function DUF1212 Rpal_1547 1638067 - 1638468 + | hypothetical protein Rpal_1548 1638465 - 1639958 + | malate/quinone oxidoreductase TERM 1187 1641308 - 1641320 + G 88 -10.5 -4.36914 | AGCTTTATCTACGCA CCGGC GAC GCCGG TTTTCTCGACGCGGC Rpal_1549 1641010 - 1642047 + | glycosyl hydrolase family 88 Rpal_1550 1642044 - 1643195 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 1188 1643816 - 1643802 - g 79 -2.1 -5.07652 | gap 1, overlap 1643803 1643804 CGCGGGAAAAGAAAA TGG-GC ATGC GCGCCA GCCCGACCTCCGACG Rpal_1551 1643222 - 1644346 + | acyl-CoA dehydrogenase domain protein Rpal_1552 1644355 - 1645530 + | L-carnitine dehydratase/bile acid-inducible protein F Rpal_1553 1645543 - 1647183 + | AMP-dependent synthetase and ligase TERM 1189 1649264 - 1649250 - g 83 -12.8 -4.09739 | GCAAGCCCGTCAAAA CCGCGC CGC GCGCGG CGACGACCGAAACGC Rpal_1554 1647176 - 1650643 + | Indolepyruvate ferredoxin oxidoreductase TERM 1190 1650806 - 1650852 + G 73 -12.9 -3.21595 | gap 2, overlap 1650843 1650845 CGGCGTCGTTCGCGG CGCCGCTCGGCATCGCGCTCGGC ATC GCCGCG-GCGGTGGCG-GCGTCG TTGGTCGTCGCCGTT Rpal_1555 1650640 - 1651494 + | inner-membrane translocator Rpal_1556 1651491 - 1652429 + | inner-membrane translocator Rpal_1557 1652419 - 1653198 + | ABC transporter related Rpal_1558 1653195 - 1653905 + | ABC transporter related TERM 1191 1654549 - 1654525 - g 70 -11.4 -3.40403 | GCTGGCGCAGGAGAA GGGGGTCGAG GTGAT CTCGACCGCC AGCGCGCCTGGCAAC Rpal_1559 1653935 - 1655095 + | Extracellular ligand-binding receptor TERM 1192 1655228 - 1655215 - g 83 -3.7 -5.14563 | opp_overlap 1655216, overlap 1655216 1655217 GCCCTGATCAAAAAA TGCGC GATC GCGCT GTTCGCGGCAAAGGG Rpal_1560 1655152 - 1655817 + | transcriptional regulator, TetR family TERM 1193 1656268 - 1656257 - T 76 -7.2 -4.27117 | GTCCGACAACAGAAA CCGG ACAT CCGG TCAAATTCGAATTGA TERM 1194 1656627 - 1656654 + T 83 -12.7 -3.90744 | opp_overlap 1656626 1656624 1656627 CAACGTCTGAAATAC CCGGGCAGAGC GGACCA GCTCTGCACGG TTCTTTCGGCGCAAA Rpal_1562 1658116 - 1656794 - | type I secretion membrane fusion protein, HlyD family Rpal_1563 1659938 - 1658127 - | type I secretion system ATPase TERM 1195 1658361 - 1658324 - G 71 -14.7 -2.56271 | overlap 1658323 1658321 GCGCGATGATAATAG CGATGCCGCCCCGCGCG CGAA CGCGCCGGATGGCGTCG GTCAGCGCAGCGTCG TERM 1196 1661192 - 1661223 + G 77 -8 -4.36914 | gap 1, overlap 1661209 GTGACATTCTCCGGC TCGATCGCATCGAGT CAG GC-CGATGCGGCCGA TTTTGTCGGCGGCAA TERM 1197 1661591 - 1661627 + G 73 -5.9 -4.34402 | gap 1, overlap 1661594 CTCCAGGAAGAGGTC TCGGATTCCGACGGCA ACGTGC TGACGTCGGAAGC-GA TTTTCGTCTACGGAA TERM 1198 1662158 - 1662124 - g 80 -17.2 -2.72661 | opp_overlap 1662129, overlap 1662126 CACCACTCCGAACTA CAGCACCGCCAATGCG ATC CGCATGGGCGATACTG TCACCGGGCTCACCG TERM 1199 1662156 - 1662126 - g 71 -14 -2.90723 | opp_overlap 1662129, overlap 1662124 CCACTCCGAACTACA GCACCGCCAATGCG ATC CGCATGGGCGATAC TGTCACCGGGCTCAC TERM 1200 1663921 - 1663891 - g 72 -8.2 -4.09739 | GGAAGGCGGCGAAAA GATCGGCGTGGTCG GTG CGACTACCCAGATC GTCCAGAGCATCTCA TERM 1201 1668236 - 1668208 - g 75 -15.3 -2.70932 | overlap 1668190 1668235 CGGCGGCGGCAACGA CGTCATCGCCGGC GGC GCCGGCAACGACA AGCTGCTCGGTGGTG Rpal_1564 1660415 - 1668742 + | 5'-Nucleotidase domain protein Rpal_1565 1669157 - 1669957 + | transcriptional regulator, DeoR family TERM 1202 1670004 - 1669978 - f 90 -15.8 -3.72576 | overlap 1669981 CGCGTCCCGACGAAA CGACCGCGCTCC TAT GGAGCGCGGCTG ACCAACATCCCTTCA TERM 1203 1670001 - 1669981 - f 90 -18.3 -2.96695 | overlap 1669978 GTCCCGACGAAACGA CCGCGCTCC TAT GGAGCGCGG CTGACCAACATCCCT TERM 1204 1674125 - 1674078 - g 73 -14 -3.21416 | gap 1, opp_overlap 1674106, overlap 1674103 GAGGGCGACGACGAA GTCTTCGGCGTCGCCGGCAA-CG ACA CGATCGACGGCGGCGCCGGTGAC GACCGGATCGATGGC TERM 1205 1674295 - 1674346 + G 73 -15.3 -2.52543 | gap 1, opp_overlap 1674277 CCGACAGCGCCGGCT TCGTGGCCGACCT-GTCGTCGG GACAGGCCG CCGGCGACGAGATCGGCTACGA TAGCTTGCGCAACAT TERM 1206 1674483 - 1674521 + G 72 -13.7 -3.06796 | opp_overlap 1674502 1674505 GACGACGTCCTGCGC GGTGGCGCCGGCGACGA CACCA TCGACGGCGGCGCCGGC TTCGATACGCTCGAC TERM 1207 1674738 - 1674710 - g 75 -15.3 -2.70932 | overlap 1674692 CGGTGGCGGCAACGA CGTCATCGCCGGC GGC GCCGGCAACGACA AGCTGTTCGGTGGTG Rpal_1566 1670106 - 1675244 + | outer membrane adhesin like proteiin Rpal_1567 1676320 - 1675391 - | Integrase catalytic region TERM 1208 1676697 - 1676717 + r 71 -5.3 -4.41895 | overlap 1676699 TATGTCTTCAATATG GTCAGCTCG CCA CGATCTGCC TTTTGCTTGGCACTT Rpal_1569 1677721 - 1676675 - | hypothetical protein Rpal_1570 1678484 - 1677684 - | hypothetical protein TERM 1209 1677764 - 1677742 - GH 100 -5.5 -5.40072 | overlap 1677743 GGTCTTTGAAAAAAA TCGATCGCG AACTG CACGATCGG CTTGGCCTCTGGGCG TERM 1210 1677763 - 1677743 - GH 74 -9 -3.83561 | overlap 1677742 GTCTTTGAAAAAAAT CGATCGCG AACTG CACGATCG GCTTGGCCTCTGGGC TERM 1211 1678611 - 1678643 + H 95 -9.9 -4.58283 | opp_overlap 1678612, overlap 1678612 1678614 GGCGGGCCTTAGAGA ATGTGGTAGCGGG TCCCTCT CCCGCTACCATAG TTTTTCAAGCGCTTA TERM 1212 1678642 - 1678612 - H 71 -11.2 -3.48276 | opp_overlap 1678611 1678612 1678614 GCGGGCCTTAGAGAA TGTGGTAGCGGG TCCCTCT CCCGCTACCATA GTTTTTCAAGCGCTT TERM 1213 1678612 - 1678642 + H 77 -13.4 -3.34488 | opp_overlap 1678612, overlap 1678611 1678614 GCGGGCCTTAGAGAA TGTGGTAGCGGG TCCCTCT CCCGCTACCATA GTTTTTCAAGCGCTT TERM 1214 1678614 - 1678640 + H 76 -13.8 -3.23708 | opp_overlap 1678612, overlap 1678612 1678611 GGGCCTTAGAGAATG TGGTAGCGGG TCCCTCT CCCGCTACCA TAGTTTTTCAAGCGC Rpal_1571 1679823 - 1680887 + | putative sulfate ester transporter, periplasmic binding component TERM 1215 1681479 - 1681498 + G 79 -11.4 -3.86015 | overlap 1681480 TGGGCAGCGTGATCC TGCCGGCA GCGC TGCCGGCG TTTCTCACCGGGCTG Rpal_1572 1680884 - 1682500 + | binding-protein-dependent transport systems inner membrane component Rpal_1573 1682497 - 1683306 + | ABC transporter related Rpal_1574 1683348 - 1685012 + | sulfatase TERM 1216 1685038 - 1685064 + T 79 -11.4 -3.82946 | opp_overlap 1685009 AGGTCAAGCCTGACC GGCGCCTGGCGC AGC GCGTCCGGAGCC TTCTATTTCACGTCC Rpal_1575 1685402 - 1685067 - | Sulphur oxidation protein SoxZ Rpal_1576 1685869 - 1685399 - | hypothetical protein Rpal_1577 1687161 - 1685869 - | Flavocytochrome c sulphide dehydrogenase flavin-binding TERM 1217 1686052 - 1686024 - G 82 -17.5 -3.01712 | CGCTCGGCCGGAACA CGCCGACTACGGA GAT TCCGTAGTCGTCG CCGACATGACTGTAG Rpal_1578 1687513 - 1687172 - | cytochrome c, class I Rpal_1579 1688731 - 1687532 - | protein of unknown function DUF395 YeeE/YedE TERM 1218 1689669 - 1689654 - H 71 -4.6 -4.4009 | overlap 1689656 CTCGAGCGGACAAAA CGCCTT GGGA AGGGCG TCGCGCTCGCCGCGT Rpal_1583 1690466 - 1691281 + | ABC transporter related Rpal_1584 1691278 - 1692144 + | binding-protein-dependent transport systems inner membrane component Rpal_1585 1692141 - 1693703 + | AMP-dependent synthetase and ligase TERM 1219 1693857 - 1693898 + G 73 -9.3 -3.90112 | gap 1, opp_overlap 1693833 CGCGCGTCTACGACT GCCAGTCCTGGT-CGCGCCG ATG CTGCGCATATCAGGGCCGGC TTTGGTTGCAGCGAG Rpal_1586 1693816 - 1694811 + | 2-nitropropane dioxygenase NPD TERM 1220 1695217 - 1695238 + T 76 -7.2 -4.34402 | opp_overlap 1695203 AGGAGGCCGTCTCGC GCCTCGCC TTACCC GGCAAGGC TTTTGATGTAGGCCC Rpal_1587 1697048 - 1695225 - | allophanate hydrolase Rpal_1588 1700596 - 1697048 - | urea carboxylase TERM 1221 1697680 - 1697699 + g 81 -10.6 -4.09685 | opp_overlap 1697676 1697678 AGATGCACATATAGG CGCCGCCG ATGC CGACGGCG TTTTCGGGCGTCCAG TERM 1222 1700023 - 1700076 + g 71 -14.5 -2.52516 | gap 1, opp_overlap 1700011 1700009, overlap 1700022 ACACCCGCGCGTCGC CGAAGCTGGCGCGGGCGGTGCGCTGC ACG GTGGCGAAGCGCTCGCGT-AGCGTCG CTTCGTCATGGCAGA TERM 1223 1700329 - 1700294 - G 76 -14.6 -3.18383 | opp_overlap 1700317 1700318, overlap 1700328 ACGCGGACCGATGAA GGCTATGCCGTGCTGC TTCA GCCGCTCGGCAAAGCC GCGGTTCTCCGACAG Rpal_1589 1701234 - 1700599 - | urea carboxylase-associated protein 1 Rpal_1590 1702076 - 1701237 - | urea carboxylase-associated protein 2 TERM 1224 1701964 - 1702011 + g 75 -13.5 -3.45023 | gap 3 GGCGCGCCGTCGCGC GGCG-TCGG-CGGCGGCAGG-GCC TTC GGCGCCTGCTGCTGGCCCAGCGCC TTGTGCTGCTCGTAG TERM 1225 1702147 - 1702098 - R 79 -9 -4.16842 | gap 1, opp_overlap 1702121, overlap 1702099 CTCACGGTGAACAAA CGCCGGGTCGTCCCGGCTCATGC TCCCT GTGCG-GCCGGGTCGTCCCGGCC GGAGCGGATTGGATG TERM 1226 1702146 - 1702099 - R 71 -12.5 -3.09784 | gap 1, opp_overlap 1702121, overlap 1702098 TCACGGTGAACAAAC GCCGGGTCGTCCCGGCTCATGC TCCCT GTGCG-GCCGGGTCGTCCCGGC CGGAGCGGATTGGAT Rpal_1591 1702906 - 1702115 - | ABC transporter related Rpal_1592 1703721 - 1702903 - | binding-protein-dependent transport systems inner membrane component Rpal_1593 1704825 - 1703755 - | ABC transporter periplasmic binding protein, urea carboxylase region Rpal_1594 1705990 - 1705199 - | Enoyl-CoA hydratase/isomerase TERM 1227 1705970 - 1705954 - G 72 -13.7 -3.01924 | opp_overlap 1705966 1705969 TATGGCGTTCGAACA CGACGGC ATC GCCGTCG GCTGCGCTGCGTGCA TERM 1228 1706849 - 1706824 - g 75 -15.5 -2.70932 | GTTCTCGCCGAACGA CGTGCTGGCTG CGAT CAGCCAGCACA AGGTGACGGTAGCGA TERM 1229 1707636 - 1707619 - g 71 -9.1 -3.85878 | gap 1, opp_overlap 1707621, overlap 1707613 CAACAAGATCAACAA GGCG-GCG CTC CGCGCGCC GTATTGGAGCGACAA Rpal_1595 1706111 - 1707670 + | AMP-dependent synthetase and ligase Rpal_1596 1708765 - 1707827 - | transcriptional regulator, IclR family TERM 1230 1708048 - 1708063 + g 77 -4 -4.77986 | overlap 1708058 TGGCCATCTCGCGCA TCGATT TGGT GATCGA TTTTTCGATCTTTGG Rpal_1597 1708885 - 1709745 + | 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase TERM 1231 1709787 - 1709777 - f 73 -6.8 -4.25104 | CCGCGTGCAGGAAAA CGGT GCG ACCG GCCTGCGGAGAGTGA TERM 1232 1710206 - 1710185 - g 93 -10.1 -4.69053 | GATCACCGAAGAAAA GGTGCCGCT GCTG ACCGGCACC ATCCTCAGCGCACAG Rpal_1598 1709871 - 1711115 + | Extracellular ligand-binding receptor TERM 1233 1711240 - 1711275 + G 71 -12.7 -3.34344 | gap 2, opp_overlap 1711185 1711250, overlap 1711238 1711230 ATCGGCCCCAACGGC GCCGGCAAGACGACGCT GTTC GGCGTCGTC-T-CCGGC TTCATTGCGCCGTCG Rpal_1599 1711123 - 1711842 + | ABC transporter related Rpal_1600 1711835 - 1712539 + | ABC transporter related TERM 1234 1712662 - 1712674 + G 71 -9.1 -3.84825 | CCGGCATCGTCAACT TCGCC CAT GGCGA TTTCATCTCGCTGGC Rpal_1601 1712553 - 1713416 + | inner-membrane translocator Rpal_1602 1713413 - 1714423 + | inner-membrane translocator Rpal_1603 1717608 - 1714450 - | heavy metal efflux pump, CzcA family Rpal_1604 1718999 - 1717605 - | efflux transporter, RND family, MFP subunit TERM 1235 1719050 - 1719089 + r 75 -12.1 -3.55622 | gap 2, opp_overlap 1719052 1719055, overlap 1719052 AATTCGGGAGATAGG AAGGAC-G-GCGGCGCCGC GGCT GCGGCGCCGCGCTGGCCTA TTTGAACGCCTTGAC TERM 1236 1719052 - 1719087 + r 82 -14.7 -3.35522 | gap 2, opp_overlap 1719052 1719055, overlap 1719050 TTCGGGAGATAGGAA GGAC-G-GCGGCGCCGC GGCT GCGGCGCCGCGCTGGCC TATTTGAACGCCTTG TERM 1237 1719087 - 1719052 - R 82 -14.7 -3.32022 | gap 2, opp_overlap 1719052 1719050, overlap 1719055 TTCGGGAGATAGGAA GGAC-G-GCGGCGCCGC GGCT GCGGCGCCGCGCTGGCC TATTTGAACGCCTTG TERM 1238 1719081 - 1719055 - R 87 -17.3 -2.83345 | gap 1, opp_overlap 1719052 1719050, overlap 1719052 GGGAGATAGGAAGGA CGGCGGCGCCGC GGCT GCGGCGCCG-CG CTGGCCTATTTGAAC Rpal_1605 1719482 - 1719087 - | putative exported protein of unknown function TERM 1239 1719305 - 1719322 + g 71 -12.7 -3.24924 | overlap 1719303 AAATCACCGCGCCTT CCACCGG CTTA CCGGTGG TCTTGTGGGTGAGGC Rpal_1606 1719989 - 1719579 - | putative exported protein of unknown function Rpal_1607 1720533 - 1721477 + | SRPI protein TERM 1240 1721621 - 1721679 + G 87 -14.5 -3.85698 | gap 2, overlap 1721623 CGAATGCGTTCTTCT TGGCGCTGCCGA-CCGGG-GCGGTTCCGG AGC CCGGCGCCGCGCTTGGGTCGGCGCCGCTG TTTGTGGCCGAGCCG TERM 1241 1721623 - 1721677 + G 89 -17.1 -3.51934 | gap 2, overlap 1721621 AATGCGTTCTTCTTG GCGCTGCCGA-CCGGG-GCGGTTCCGG AGC CCGGCGCCGCGCTTGGGTCGGCGCCGC TGTTTGTGGCCGAGC TERM 1242 1722644 - 1722622 - g 81 -12.7 -3.85698 | gap 1, overlap 1722606 CTCGCCGCCGAGAAA GGCGCG-CGC TTGC GCGTCGCGCC GGTCGACGATCACGG TERM 1243 1722839 - 1722863 + G 82 -11.5 -4.10179 | TCTGCCACATGCCGG TCGACGTCCAG GAG TTGGATGTCGA TTTCTATGCGTTCTC Rpal_1608 1721464 - 1723437 + | cysteine desulfurase, SufS subfamily Rpal_1609 1723602 - 1724549 + | Serine O-acetyltransferase TERM 1244 1724624 - 1724636 + F 72 -2.6 -4.68512 | overlap 1724615 GTGATATGCCGTCGT TGCG ACTGG CGCG TTGTTTTTATTCTCC Rpal_1610 1724739 - 1725845 + | ABC transporter related Rpal_1611 1725835 - 1726503 + | binding-protein-dependent transport systems inner membrane component Rpal_1612 1726532 - 1727305 + | lipoprotein, YaeC family TERM 1245 1727363 - 1727345 - T 100 -17.4 -4.0162 | opp_overlap 1727345 GTCCGACACGACAAA GCCCGCGC ATC GCGCGGGC TTTTCTTTTCGCCAA TERM 1246 1727345 - 1727363 + T 100 -17.4 -5.07652 | opp_overlap 1727345 GTCCGACACGACAAA GCCCGCGC ATC GCGCGGGC TTTTCTTTTCGCCAA TERM 1247 1727614 - 1727641 + T 76 -12.6 -3.42996 | opp_overlap 1727612, overlap 1727615 GACGATGTGAAGAGC TGCGGCGGAACG CTGA CGCTCCGCCGCC TTGTCCTCAGTCCTC TERM 1248 1727615 - 1727640 + T 80 -16.1 -2.65476 | opp_overlap 1727612, overlap 1727614 ACGATGTGAAGAGCT GCGGCGGAACG CTGA CGCTCCGCCGC CTTGTCCTCAGTCCT Rpal_1613 1728998 - 1727661 - | Phenylacetate--CoA ligase Rpal_1614 1729879 - 1729094 - | NLPA lipoprotein TERM 1249 1729371 - 1729317 - G 71 -2.7 -4.58395 | gap 1 TTGACCGCCGAAAAA TCGAGATCGTTCAGCGAG-CGCGGCA GCTG CGCGGCGTCAAGCTCGACGATCTTGA GATGCTTGGGATTCT Rpal_1615 1730318 - 1730127 - | hypothetical protein TERM 1250 1730989 - 1730977 - H 71 -9.1 -3.72893 | GATGTCTCGATCAAA TGCCG CGT CGGCA CTCCGATCTCGCAGC Rpal_1616 1731010 - 1731843 + | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase Rpal_1617 1732482 - 1731952 - | 5-nitroimidazole antibiotic resistance protein Rpal_1618 1733130 - 1732540 - | hypothetical protein Rpal_1619 1733819 - 1733127 - | Fe-only nitrogenase accessory protein AnfO TERM 1251 1733886 - 1733850 - R 89 -13.1 -4.11183 | gap 1, opp_overlap 1733848 1733880, overlap 1733852 CGTCAGGAGAAAGAA GAGTCCGGCGACGG ACATGGCAAA CCGTCGCCGGAC-C AGATCTTGAGCGTGG TERM 1252 1733885 - 1733852 - R 91 -16.8 -3.64882 | opp_overlap 1733848 1733880, overlap 1733850 TCAGGAGAAAGAAGA GTCCGGCGACGG ACATGGCAAA CCGTCGCCGGAC CAGATCTTGAGCGTG Rpal_1620 1735287 - 1733902 - | Fe-only nitrogenase, beta subunit TERM 1253 1734932 - 1734962 + g 77 -14 -3.37344 | AGCTCTTCCTGCAGC TTGGTGACGACGCC GTC GACGTCGTCGCCGA TTACTTCGGTCGAGC Rpal_1621 1735741 - 1735301 - | Fe-only nitrogenase, delta subunit TERM 1254 1735580 - 1735598 + g 73 -13.2 -3.21747 | overlap 1735583 CCACGCCCGCGAGTG GAACTGCC AAA GGCAGTTC TTCATGATCCAGTCG Rpal_1622 1737321 - 1735753 - | nitrogenase alpha chain TERM 1255 1736309 - 1736332 + g 70 -2.2 -4.66833 | overlap 1736311 1736311 CAGTGCCACAGCTTG GAGCCGCCTG GCCA CAGGCAGACC TTTTTGCCCTTCAGC Rpal_1623 1738198 - 1737371 - | nitrogenase iron protein TERM 1256 1738689 - 1738668 - R 100 -17.3 -4.27316 | TCCGCCAACGCAAAA CGGCGGCTC GTAA GAGCCGCCG TCTGAGATTCCGAAG Rpal_1624 1740407 - 1738722 - | transcriptional regulator, NifA subfamily, Fis Family TERM 1257 1739613 - 1739634 + g 71 -12.3 -3.30124 | GCCGAGCAGCAGCAC GGTGGCCTT GGTC GAGGCCACC TTGTGCACCATGGCG TERM 1258 1739901 - 1739858 - G 86 -18.2 -3.0094 | gap 1, opp_overlap 1739859 1739874 GCTGATTCATATAGA CGCGCTCGGCGCAGATGGTGC CGA GCACCTTCTGGGC-GAGCACG ATCGGCACGCAGAAG Rpal_1625 1740935 - 1740411 - | hypothetical protein TERM 1259 1740669 - 1740651 - G 79 -7.3 -4.62471 | opp_overlap 1740665 1740666 1740668, overlap 1740653 CTTAACTCGGAAAAA GCCGGCG AAGCG CTCCGGC GCGGAGCTACGTCCG Rpal_1626 1741939 - 1741118 - | aspartate/glutamate/uridylate kinase Rpal_1627 1742761 - 1741949 - | aspartate/glutamate/uridylate kinase Rpal_1628 1743868 - 1743053 - | transcriptional regulator, GntR family Rpal_1629 1744056 - 1744196 + | hypothetical protein Rpal_1630 1744243 - 1745244 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1260 1745635 - 1745670 + G 75 -13.3 -3.35197 | gap 2 AGGGGGATGCGGCCT CACGC-CG-TCGCCGCG GTAT CGCGGCGCTCGAGCGTG TTGGTCTGTCTCCGG Rpal_1631 1745241 - 1746290 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 1261 1746785 - 1746763 - g 70 -2 -4.66833 | gap 1, opp_overlap 1746774, overlap 1746764 1746765 GCTGAAGCTGAAAAA TC-CCGACA CGGCGC TGCCGGCGA TCTTGTCGGATCGCG Rpal_1632 1746281 - 1747834 + | extracellular solute-binding protein family 5 TERM 1262 1747843 - 1747862 + F 82 -15 -3.29947 | opp_overlap 1747821 1747841 1747840 CGCCTGATCAAACGG CGCCGCGA GAGA TCGCGGCG TTCCTCTGCTGGATG Rpal_1633 1747887 - 1748843 + | binding-protein-dependent transport systems inner membrane component Rpal_1634 1748840 - 1749724 + | binding-protein-dependent transport systems inner membrane component Rpal_1635 1749750 - 1751465 + | AMP-dependent synthetase and ligase TERM 1263 1751502 - 1751473 - f 71 -12.7 -3.00525 | CGCTGTGAAACGAGA CGGCCGGCGACGC AAAG GCGCTGCCGGCCC AAAGCTACCTGCCGA TERM 1264 1753361 - 1753340 - g 73 -12.3 -3.4072 | gap 1, overlap 1753327 TACGCTCGACGAGAA CCGCCCCGAC TCG GTCGGG-CGG CGGCGCAAGACCAAT Rpal_1636 1751529 - 1754840 + | Carbamoyl-phosphate synthase L chain ATP-binding Rpal_1637 1754878 - 1755831 + | hypothetical protein Rpal_1638 1755993 - 1755838 - | conserved hypothetical protein; putative signal peptide Rpal_1639 1756131 - 1756739 + | cytochrome c oxidase subunit III TERM 1265 1756828 - 1756838 + G 72 -8.2 -4.07568 | overlap 1756818 CTCCTCAGTCGCGGT GCCG TGG CGGC TTTTGCCGGCGGCGC Rpal_1640 1756744 - 1757013 + | hypothetical protein Rpal_1641 1757124 - 1757576 + | nitric-oxide reductase, small subunit Rpal_1642 1757614 - 1758960 + | Nitric-oxide reductase TERM 1266 1758966 - 1758995 + F 100 -20.7 -3.75153 | opp_overlap 1758960, overlap 1758967 GGCCGAATAGGCCTC CCGGCGGCCACGG CAAT CCGTGGCCGCCGC TTTCCATTGACGGAG TERM 1267 1758967 - 1758994 + F 100 -24.2 -2.84878 | opp_overlap 1758960, overlap 1758966 GCCGAATAGGCCTCC CGGCGGCCACGG CAAT CCGTGGCCGCCG CTTTCCATTGACGGA Rpal_1643 1759017 - 1759829 + | ATPase associated with various cellular activities AAA_5 TERM 1268 1759848 - 1759879 + F 83 -16.6 -2.92192 | gap 1, overlap 1759843 GCCTCTCTTCAGTCA TTCCGGG-GCGCCGC GCA GCGGCGAACCCGGAA TCTCCTTCGATAACA Rpal_1644 1759970 - 1761880 + | von Willebrand factor type A Rpal_1645 1762764 - 1761892 - | hypothetical protein Rpal_1646 1763900 - 1762884 - | hypothetical protein Rpal_1647 1765200 - 1763992 - | cobalamin synthesis protein P47K TERM 1269 1764456 - 1764466 + g 70 -8.2 -4.00348 | TTTCCGGCACGTGGT CGGC GAA GCCG TTTAGTTCCTTGAAC TERM 1270 1764990 - 1765010 + g 70 -9.8 -3.72576 | TGCAGCAGATGCAGC CATTGGTC ATCTC GACCAATG TTTCCTCCGACCGCG Rpal_1648 1765529 - 1767385 + | dihydroxy-acid dehydratase TERM 1271 1767484 - 1767449 - T 76 -8.3 -4.16016 | gap 1, overlap 1767451 CGAGGTCGCAACAAA GACGTGGATGGCCGGG ACAAG CCCGGCCATG-ACGTA GCTCAGGAACGAACT TERM 1272 1767482 - 1767451 - T 73 -10.9 -3.67877 | gap 1, overlap 1767449 AGGTCGCAACAAAGA CGTGGATGGCCGGG ACAAG CCCGGCCATG-ACG TAGCTCAGGAACGAA Rpal_1649 1768314 - 1767511 - | peptidase C26 Rpal_1650 1768560 - 1770374 + | Chloride channel core Rpal_1651 1772193 - 1770388 - | allophanate hydrolase Rpal_1652 1772936 - 1772190 - | transcriptional regulator, GntR family Rpal_1653 1773328 - 1772933 - | hypothetical protein Rpal_1654 1774707 - 1773331 - | amidohydrolase, AtzE family Rpal_1655 1774927 - 1774736 - | hypothetical protein TERM 1273 1774999 - 1774954 - R 81 -15.5 -3.05715 | gap 1 AAGCTTGGCATTTAA GTTCGTCATTCCGGGCTCACGC TTC GCGTGC-CCCGGAATGACGAGT GGAGGGTGGCAAAGC Rpal_1656 1776861 - 1775020 - | ABC transporter related TERM 1274 1775371 - 1775412 + g 72 -13 -3.14132 | gap 1, opp_overlap 1775371 1775384 GAGCTGATGCGGAAA CCGGTCGAGCAGATCGAGC GGCAG GC-CGACCTGCTCGGCCAG TTCCTCGCAGCGCAC TERM 1275 1775412 - 1775371 - G 81 -15.2 -3.57462 | gap 1, opp_overlap 1775371, overlap 1775384 GAGCTGATGCGGAAA CCGGTCGAGCAGATCGAGC GGCAG GC-CGACCTGCTCGGCCAG TTCCTCGCAGCGCAC Rpal_1658 1777928 - 1777017 - | binding-protein-dependent transport systems inner membrane component Rpal_1659 1778952 - 1777939 - | binding-protein-dependent transport systems inner membrane component Rpal_1660 1780742 - 1779123 - | extracellular solute-binding protein family 5 TERM 1276 1780136 - 1780148 + g 86 -9.1 -4.67011 | GCTTGGTGTATTCGA GACCC CAC GGGTC TTTTTCGGTCGCGTT TERM 1277 1781082 - 1781061 - R 100 -18.7 -5.07652 | GCGGCCAAAACAAAA GCGGCGGGG AAAT CCCCGCCGC CTGCGTCGTCAGTGG Rpal_1661 1781585 - 1781121 - | hypothetical protein TERM 1278 1781799 - 1781766 - R 72 -13.9 -2.72344 | gap 1, opp_overlap 1781759 1781794 CCTGACGTGGAACGA TCGTCGGGT-GCGACA GCC TGCCGCGACCCGGCGA TCAGGCGCTGATTAT Rpal_1662 1782078 - 1781839 - | hypothetical protein Rpal_1663 1782403 - 1783410 + | extracellular solute-binding protein family 1 TERM 1279 1783421 - 1783446 + F 74 -14.7 -2.65264 | GTTGAGTCGATCGGC TGTCCCGGCTG GCGA CGGCCGGGACG TCGTCTGAATCATGA Rpal_1664 1783458 - 1784273 + | binding-protein-dependent transport systems inner membrane component TERM 1280 1784771 - 1784802 + G 72 -13.6 -3.20858 | gap 1, opp_overlap 1784767 CCCTCGACGAAGGCG CGGCCTCGCTCGGCG CAT CGCCG-GCGCGGCGG TTCATAAATGTCATC Rpal_1665 1784278 - 1785063 + | binding-protein-dependent transport systems inner membrane component Rpal_1666 1785060 - 1786121 + | ABC transporter related Rpal_1667 1786121 - 1786975 + | metallophosphoesterase Rpal_1668 1787079 - 1787474 + | response regulator receiver protein TERM 1281 1787644 - 1787661 + G 77 -7.7 -4.41047 | gap 1, overlap 1787646 TGCCTGCTGAGCGTG GT-CGCCG CCG CGGCGTAC TTTTCATTCAGCCAT Rpal_1669 1787605 - 1788450 + | hypothetical protein Rpal_1670 1789696 - 1788461 - | FAD dependent oxidoreductase TERM 1282 1789231 - 1789211 - G 91 -9.6 -4.78149 | opp_overlap 1789211 1789212, overlap 1789212 GCGATAACCCAAAAA GGCGCCGG GCAGG CCGGCGCG TTTGCGAAGTTCGTG TERM 1283 1789230 - 1789212 - G 75 -13.1 -3.46167 | opp_overlap 1789212 1789211, overlap 1789211 CGATAACCCAAAAAG GCGCCGG GCAGG CCGGCGC GTTTGCGAAGTTCGT TERM 1284 1789772 - 1789744 - H 91 -9.6 -4.59773 | gap 1, opp_overlap 1789744, overlap 1789726 GCCGATCGTGAAAAA GGTCTCGCACCGC CGAC ACGGC-CGAGACC TTTTCCGATTGCTGA Rpal_1671 1790046 - 1791698 + | phosphoglucomutase, alpha-D-glucose phosphate-specific TERM 1285 1791969 - 1791989 + G 82 -12.5 -3.9712 | CGGGCGAGACTGGTT GGCGCGCTC GGT GAGCGCGGC TTTCTGATCGCCTAC Rpal_1672 1791876 - 1792568 + | NnrUfamily protein TERM 1286 1792635 - 1792604 - f 83 -15.2 -3.19192 | opp_overlap 1792604, overlap 1792608 TGCGAGCGAAGCGAA GCAATCCAGCTCCG TGCC CTGAGCCGGATTGC TTTTTCGGCAGCGTC TERM 1287 1792604 - 1792635 + F 100 -13 -4.57073 | opp_overlap 1792604 1792608 TGCGAGCGAAGCGAA GCAATCCAGCTCCG TGCC CTGAGCCGGATTGC TTTTTCGGCAGCGTC Rpal_1673 1792785 - 1794011 + | NnrS family protein Rpal_1674 1794050 - 1794298 + | hypothetical protein Rpal_1675 1795504 - 1794302 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1288 1794369 - 1794407 + g 74 -12.5 -3.53224 | gap 2 AGCACCGCCTTGGTG TGC-TCGCCGAG-CCGCGC CAC GCGCGGGTTCGGCGACGGA TTTGCCGCCGACATC TERM 1289 1795250 - 1795262 + g 81 -7.7 -4.58283 | GGGCGATTTCAGGTC GAGCA CGA TGCTC TTTTTGCCGACGTTG Rpal_1676 1796325 - 1795639 - | two component transcriptional regulator, LuxR family Rpal_1677 1798642 - 1796330 - | GAF sensor signal transduction histidine kinase TERM 1290 1796763 - 1796790 + g 76 -14.8 -3.19602 | overlap 1796762 CAGGCGAGGCGGTTG GCCTGGCGGCCG ACGT CGGCGGTCAGGC TCTTCATCTCGGCGA TERM 1291 1798459 - 1798415 - G 70 -6.2 -4.25104 | gap 1, overlap 1798416 1798445 CTGGTCGGACGAAAA GGCCGTGGAGGCGGCGGTGCC AGGC AACAACTCCGCCGCCGCG-CC GAGCAGCGATGCGGT TERM 1292 1798487 - 1798445 - G 75 -11.9 -3.67597 | gap 2, overlap 1798415 1798416 GGTGCCAGGCAACAA CTCCGCCGCCGCG-CCG-AGC AGC GATGCGGTCGCGCCGGCGGCG TGGACGATGGTCAAA Rpal_1678 1798988 - 1799143 + | antenna complex alpha/beta subunit Rpal_1679 1799156 - 1799335 + | antenna complex alpha/beta subunit TERM 1293 1799364 - 1799390 + F 73 -10.9 -3.6053 | gap 1, overlap 1799361 1799364 1799367 GAAGCTGTCGTGGCT G-GACCGGGATC CAAG GGTCCCGGTCGC TTGCTTTGTAGCCCG TERM 1294 1800116 - 1800136 + G 81 -11.1 -4.07568 | GCGAGCGCCATCATC TTCGGCGTG CTG CTCGCCGAA TTTTCACCGGGACGC Rpal_1680 1799522 - 1800958 + | PUCC protein Rpal_1681 1800977 - 1801627 + | hypothetical protein Rpal_1682 1801643 - 1801936 + | hypothetical protein TERM 1295 1801957 - 1801994 + F 100 -15.5 -4.27316 | overlap 1801958 CCGGCCCTACAGGTC CCATGACGCCGCGGGCA GTAA TGTCCGCGGCGCCGTGC TTTTGGGTTGCAAGA TERM 1296 1801958 - 1801993 + F 93 -19 -3.16068 | overlap 1801957 CGGCCCTACAGGTCC CATGACGCCGCGGGCA GTAA TGTCCGCGGCGCCGTG CTTTTGGGTTGCAAG TERM 1297 1802036 - 1802013 - f 76 -5.9 -4.63218 | overlap 1802014 TGGGTTGCAAGAAAA TGCTGGGCA AACGCG CGCCCAGCG GTCAATCTGTTTCCA TERM 1298 1802109 - 1802127 + G 72 -11.6 -3.53091 | CGCTGCGTCCAGCAG CGCCGCGG CGT CCGCGCCG TTTAGCGGCCCCGCT Rpal_1683 1802077 - 1803618 + | FAD dependent oxidoreductase TERM 1299 1803630 - 1803674 + F 83 -14.2 -3.51234 | overlap 1803627 1803628 GTAGCGGCGTGTCTT CGAGCGCCTGCGGGGGGGCG GCGCA CGTGGTCTTGCAGGCGCTCG TCTTTAACTTTCGAT TERM 1300 1804636 - 1804654 + G 81 -11.6 -3.91911 | overlap 1804637 GCCGGTGTCCGAGAT GGCGCGGC TGC GCCGCGCG TTTGATTCCGGTGAG TERM 1301 1804637 - 1804653 + G 74 -15.1 -2.94825 | overlap 1804636 CCGGTGTCCGAGATG GCGCGGC TGC GCCGCGC GTTTGATTCCGGTGA Rpal_1684 1803968 - 1805167 + | efflux transporter, RND family, MFP subunit TERM 1302 1805155 - 1805186 + F 88 -6.4 -5.24129 | gap 1, overlap 1805142 CACGGGTTCGGCGGA CGCGGTGCGATAGGC GCC GCCCGATGC-CCGCG TTTTTTATCGACCGG TERM 1303 1806200 - 1806161 - g 73 -13.6 -3.30771 | overlap 1806164 1806194 CGAGATCCCCTACAA CATCACCCCGGTGGTCGA GGCC TCGATCACCAAGGTGCTG CACACCCTGGTCGAA Rpal_1685 1805178 - 1808345 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family TERM 1304 1808500 - 1808515 + G 81 -7.6 -4.66833 | opp_overlap 1808502 GAACGGAGACCAACC CATCAG CTGG CTGATG TTTTTCACATTGGCG Rpal_1686 1808483 - 1808935 + | hypothetical protein TERM 1305 1808991 - 1808952 - T 70 -10.6 -3.63068 | opp_overlap 1808959, overlap 1808953 TCACATCAGTCTAAA CGTCGAAGGCCCCGGTTC TCAA GAACCGGGGCCTTTTGCT GTCGTGAGGCGCCGC TERM 1306 1808990 - 1808953 - T 72 -14.1 -2.7752 | opp_overlap 1808959, overlap 1808952 CACATCAGTCTAAAC GTCGAAGGCCCCGGTTC TCAA GAACCGGGGCCTTTTGC TGTCGTGAGGCGCCG TERM 1307 1808959 - 1808984 + T 100 -20.5 -4.371 | opp_overlap 1808953 1808952 AGTCTAAACGTCGAA GGCCCCGGTTC TCAA GAACCGGGGCC TTTTGCTGTCGTGAG TERM 1308 1809093 - 1809073 - T 81 -14 -3.60151 | opp_overlap 1809067 1809066 CGCCGGAAACGAGAA TGGCCGGG ACAAG CCCGGCCA TCATGGAATTTTGAT Rpal_1687 1809641 - 1809192 - | hypothetical protein Rpal_1688 1810985 - 1809756 - | coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein TERM 1309 1811006 - 1811028 + r 72 -12 -3.36766 | opp_overlap 1811004 CGTCTTGTAGGAACC GGCCAATGGC CTC GCCATTCGCC TTAAGTTTCTCTCTC Rpal_1689 1811534 - 1811046 - | NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 TERM 1310 1811349 - 1811331 - G 70 -13.1 -3.05384 | overlap 1811294 GCCGCCGGCATCGAA GGCGCCG CCGTC CGGCGCC AGGTCCATCGCGATC Rpal_1690 1813138 - 1811534 - | dienelactone hydrolase TERM 1311 1812877 - 1812915 + g 74 -15.5 -2.56596 | gap 2, overlap 1812873 CGAAGGTCACCGCGA TGTAGCCGTTGCGCGCCAG CGT CTG-CGCG-AACGGCTGCA TCAATTGCTGCGAGC Rpal_1691 1814451 - 1813138 - | hypothetical protein TERM 1312 1815020 - 1814973 - g 77 -7.7 -4.3255 | gap 3 CGGCCAACGAAGAAA CGCCTGGCCTGATCGTCGCTGCCA CGT TGGC-GCG-CGATCCTGCCTG-CG ACTCGCTGGTGCTGC Rpal_1692 1814702 - 1815682 + | porphobilinogen deaminase Rpal_1693 1815688 - 1816710 + | magnesium chelatase ATPase subunit I TERM 1313 1817156 - 1817183 + G 76 -14.9 -3.14026 | gap 1, opp_overlap 1817136 CGAGGACGAGTTCTC GCCG-GCCGGTC TGCGC GACCGGCTCGGC TTCCATCTCGATCTC Rpal_1694 1816707 - 1818479 + | magnesium chelatase ATPase subunit D Rpal_1695 1819253 - 1818522 - | type IV pilus assembly PilZ TERM 1314 1819576 - 1819600 + r 90 -17.9 -3.06796 | opp_overlap 1819576, overlap 1819578 ATCCGCAAAACAAAA GAGCCGGTGCG GGC TGCACCGGCTC TTCGATCAGGTCGGA TERM 1315 1819600 - 1819576 - R 100 -17.2 -5.08255 | opp_overlap 1819576 1819578 ATCCGCAAAACAAAA GAGCCGGTGC GGGCT GCACCGGCTC TTCGATCAGGTCGGA TERM 1316 1819578 - 1819598 + r 78 -14.7 -3.09327 | opp_overlap 1819576, overlap 1819576 CCGCAAAACAAAAGA GCCGGTGCG GGC TGCACCGGC TCTTCGATCAGGTCG Rpal_1696 1820652 - 1819636 - | uroporphyrinogen decarboxylase TERM 1317 1819936 - 1819915 - G 73 -13.7 -3.14132 | gap 1 GGTGCGTTCGACGAA CGCCGGCAGC AGC GC-GCCGGCG CCGCGCGGGAAGCCG TERM 1318 1821301 - 1821278 - g 74 -10.3 -3.80733 | opp_overlap 1821292, overlap 1821281 1821282 CGGATTCGACAAGAA GAACCAGCG CTGGAC CGCCGGTTC GCGGGCGATTCCATG Rpal_1697 1820793 - 1821746 + | alpha/beta hydrolase fold TERM 1319 1821856 - 1821886 + G 75 -15.4 -2.70932 | opp_overlap 1821857 TGGCATGTGCAACGC ATGGGATCGCCGGC CGC GCCGGCGATCCTGC TGATTCACGGCACCG TERM 1320 1821885 - 1821857 - g 71 -14.5 -2.53263 | opp_overlap 1821856 GGCATGTGCAACGCA TGGGATCGCCGGC CGC GCCGGCGATCCTG CTGATTCACGGCACC Rpal_1698 1821757 - 1822644 + | magnesium chelatase accessory protein Rpal_1699 1822720 - 1824255 + | phytoene desaturase TERM 1321 1824512 - 1824539 + G 91 -12.6 -4.27316 | TGCCTATCCGTCCGA CCGCGCCTTCGC TGAT GTGGTGGCGCGG TTTTCGATTCCGCCG TERM 1322 1824960 - 1824972 + G 75 -9.1 -4.07568 | AACCTGCCGCGCTCC TGCCG TCC CGGCA TTTTCGCAGCGCGCG Rpal_1700 1824252 - 1825319 + | Squalene/phytoene synthase TERM 1323 1825332 - 1825362 + F 91 -20.4 -2.72839 | TAGTTGCTGCCTGCT GCGTCGGCGTACGC GTG GCGCGCGCCGACGC TCGTTGCCCATGGTT TERM 1324 1825730 - 1825672 - g 75 -9.6 -4.07568 | gap 3, opp_overlap 1825681 TGCTTCCTCTGAAAA TCCCGTCGAG--GCCCGCCGGACTCAGGC GCGG GCCTG-GTTCGAGGGGCTGCGCGACAGGA TCTGCGCCGAGATCG Rpal_1701 1825622 - 1826533 + | Coproporphyrinogen oxidase Rpal_1702 1827418 - 1826582 - | UspA domain protein TERM 1325 1826652 - 1826666 + g 75 -11.4 -3.64703 | opp_overlap 1826647 GAGCCGAACAGCGCT TCGCGG AAT CCGCGA TTTCCGTACGCGCCC Rpal_1703 1827719 - 1827853 + | hypothetical protein Rpal_1704 1827889 - 1828002 + | hypothetical protein Rpal_1705 1828982 - 1828029 - | hydroxyneurosporene synthase Rpal_1706 1830546 - 1828987 - | phytoene desaturase Rpal_1707 1830668 - 1831534 + | Polyprenyl synthetase TERM 1326 1831622 - 1831649 + G 75 -11.4 -3.66666 | gap 1, overlap 1831647 CCGGCTGCTCGGCTG GCGCG-ATTCGAT CTT GTCGAATCCGCGC TTTCAGCGTTTTGCA TERM 1327 1832578 - 1832597 + G 74 -15 -3.06796 | ACCTTTACGCCATGG GCTCCGGG AAAG CCCGGAGC TTCCCTCGACTGCAG Rpal_1708 1831584 - 1832705 + | O-methyltransferase family 2 TERM 1328 1832807 - 1832791 - f 70 -12.3 -3.16742 | CGGAATTTGGAGTAA GCGATGG ACA CCATCGC GGTCGTACTCAAGCA Rpal_1709 1832794 - 1833732 + | chlorophyll synthesis pathway, BchC Rpal_1710 1833732 - 1834730 + | chlorophyllide reductase iron protein subunit X TERM 1329 1834924 - 1834903 - g 73 -12.9 -3.25823 | TGCCGCGCAGATGAA GGCGGCGGC GGAA GCCGCCGGC AAGAGCGACGTGCTC Rpal_1711 1834754 - 1836340 + | chlorophyllide reductase subunit Y TERM 1330 1837411 - 1837370 - g 79 -10.9 -4.00868 | gap 1, opp_overlap 1837365, overlap 1837373 GCAGCTACAACGAAA GAATGTACTTGGCCGAGACC GGT GGTCGCG-CCGTGTACATTC CGGCGTCATTCCCGG TERM 1331 1837648 - 1837617 - g 73 -13.8 -3.21199 | opp_overlap 1837641 GAGCGATGAAGCCAA GGCGCTGCTCGA CGAAGTGC TCGAGCAGCACC CGGTGCTGGTGCGGA Rpal_1712 1836340 - 1837788 + | chlorophyllide reductase subunit Z Rpal_1713 1837866 - 1838090 + | hypothetical protein Rpal_1714 1838244 - 1838441 + | antenna complex alpha/beta subunit Rpal_1715 1838457 - 1838648 + | antenna complex alpha/beta subunit Rpal_1716 1838780 - 1839613 + | photosynthetic reaction center L subunit Rpal_1717 1839641 - 1840564 + | photosynthetic reaction center, M subunit TERM 1332 1840596 - 1840631 + F 91 -17.6 -3.33037 | opp_overlap 1840594 1840591, overlap 1840588 TCTGAGCGAATGATG CGCGCGCCTGATGGTA TAAA TCCAATCAGGCGCGCG TTGCTGCTTTCGGCT TERM 1333 1840769 - 1840758 - f 72 -2.2 -4.68209 | AGGCCAACAAACAAA GCCT GAGA AGAC TTCAACAATAGGGCT Rpal_1718 1840849 - 1842282 + | transcriptional regulator, Fis family Rpal_1719 1842275 - 1843168 + | bacteriochlorophyll/chlorophyll synthetase TERM 1334 1843599 - 1843585 - g 82 -12.8 -3.97947 | opp_overlap 1843589 CGCACTGACGAGAAA CGCCGC GCG GCGGCG GCCACGATCGTCTGG TERM 1335 1844356 - 1844390 + G 70 -2.6 -4.60949 | overlap 1844351 1844357 1844359 1844360 CTGGGGGCGCCCGCT TTGTCCTACGCGGCGG TGT TCGCCGCGGAAGCTGG TTTGTTTGTGGTGTC Rpal_1720 1843171 - 1844487 + | PUCC protein Rpal_1721 1844489 - 1845694 + | geranylgeranyl reductase Rpal_1722 1845714 - 1846178 + | TspO and MBR like protein Rpal_1723 1846215 - 1846487 + | hypothetical protein TERM 1336 1846543 - 1846583 + T 90 -13.4 -4.09864 | gap 1, opp_overlap 1846550, overlap 1846544 1846547 CAGAGAGCTTCCCAA ACACAAAGGGCTTCGGTTC TTGC GAACCGAAGCCCTC-GTGA TTTTCACGCGTCAGT TERM 1337 1846544 - 1846582 + T 88 -16.9 -3.05597 | gap 1, opp_overlap 1846550, overlap 1846543 1846547 AGAGAGCTTCCCAAA CACAAAGGGCTTCGGTTC TTGC GAACCGAAGCCCTC-GTG ATTTTCACGCGTCAG TERM 1338 1846547 - 1846580 + T 75 -13.9 -3.08508 | opp_overlap 1846550, overlap 1846544 1846543 GAGCTTCCCAAACAC AAAGGGCTTCGGTTC TTGC GAACCGAAGCCCTCG TGATTTTCACGCGTC TERM 1339 1846577 - 1846550 - T 100 -20 -4.32857 | opp_overlap 1846547 1846544 1846543 CTTCCCAAACACAAA GGGCTTCGGTTC TTGC GAACCGAAGCCC TCGTGATTTTCACGC Rpal_1724 1847031 - 1846612 - | cytochrome c class I Rpal_1725 1847353 - 1848747 + | transcriptional regulator, Fis family Rpal_1726 1848748 - 1850943 + | putative PAS/PAC sensor protein Rpal_1727 1851737 - 1851075 - | Heme oxygenase Rpal_1728 1852679 - 1851798 - | cobalamin B12-binding domain protein TERM 1340 1853090 - 1853056 - g 70 -2.2 -4.67982 | gap 3, opp_overlap 1853055 1853051 1853048 1853044, overlap 1853051 CGGGACGCAACAAAA TGGACGCTGGTG-CAGG GCAT CCTGGCGCC-G-GTCCA ATTTGTGGTCTTCCT TERM 1341 1853457 - 1853499 + G 75 -14.1 -3.26319 | CGACGAACGTCTGGC CGG-CCTGCGCGAGCCCTCGG TGT CCGGGAGC-CGCGCATGACCG TTCATGTCACAGGTT Rpal_1729 1852957 - 1853496 + | 2-vinyl bacteriochlorophyllide hydratase Rpal_1730 1853493 - 1854782 + | light-independent protochlorophyllide reductase, N subunit Rpal_1731 1854785 - 1856407 + | light-independent protochlorophyllide reductase, B subunit Rpal_1732 1856382 - 1860128 + | magnesium chelatase, H subunit Rpal_1733 1860125 - 1861063 + | light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein TERM 1342 1861695 - 1861725 + G 70 -11 -3.51924 | overlap 1861697 GCTGGCGCAATGGCA GCCCGGCCGCACCC ATC GGGTGTCGTCCGGC TTCTATACCTCGCAG Rpal_1734 1861063 - 1861764 + | magnesium protoporphyrin O-methyltransferase TERM 1343 1862252 - 1862297 + G 85 -9.9 -4.18367 | opp_overlap 1862236 1862276, overlap 1862269 1862271 CGCCGGTCTTGCGCT CGCCACCGACATCGC-GCCG-GA AGAC TCGCGGCCGCGG-GTC-GTGGCG TTTCTGTATGTGATG TERM 1344 1862564 - 1862579 + G 72 -6.8 -4.18018 | gap 1, overlap 1862566 GCTGGTAGCGGTGGC GCTCGGC ACA GCCG-GC TTTTCGATGCAGGAC TERM 1345 1862986 - 1862953 - g 72 -13.9 -3.06796 | gap 2, opp_overlap 1862960 1862980 GCGCAGTGCAGGCAA CCGCCGCCG-GC-GG CGGAAT CCTGCTCGGCGGCGG CATTCGCGACGCCGT TERM 1346 1863087 - 1863105 + G 70 -10.3 -3.65522 | TACTACATCGAGATC GCGTTGC TGTTT GCAACGC TTGTTGCGGTCGGTC TERM 1347 1863182 - 1863168 - g 70 -10 -3.6502 | opp_overlap 1863168 CAGTCGTCAGCCAAA TTCGGC CTT GCCGAA TTTCCAGGTTAACTA Rpal_1735 1861761 - 1863194 + | PUCC protein Rpal_1736 1863217 - 1863984 + | photosynthetic reaction center H subunit Rpal_1737 1863981 - 1864643 + | putative photosynthetic complex assembly protein Rpal_1738 1864659 - 1865165 + | photosynthetic complex assembly protein Rpal_1739 1865168 - 1865467 + | hypothetical protein Rpal_1740 1865464 - 1866561 + | magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Rpal_1741 1866575 - 1867639 + | photosynthetic complex assembly protein 2 TERM 1348 1868815 - 1868852 + G 73 -13.4 -3.24747 | gap 1, opp_overlap 1868814 1868813, overlap 1868816 GCGCTCTCTGAAATC TGGGCACGGGTCGGCCT CGCCA AGGCCG-CCTGAGCCCG TTCCTGATCTACCCG TERM 1349 1868816 - 1868851 + G 71 -14.7 -2.54634 | gap 1, opp_overlap 1868814 1868813, overlap 1868815 CGCTCTCTGAAATCT GGGCACGGGTCGGCCT CGCCA AGGCCG-CCTGAGCCC GTTCCTGATCTACCC Rpal_1742 1867636 - 1868847 + | 5-aminolevulinic acid synthase TERM 1350 1868902 - 1868875 - T 76 -14 -3.14602 | opp_overlap 1868877 1868898, overlap 1868873 TCTACCCGAGCAAGA CTGGCGCGCGCC CTCC GGCGCGCGCCTT TGTCTTTGAAGGGCT TERM 1351 1868877 - 1868900 + T 100 -21 -4.32857 | opp_overlap 1868875 1868873, overlap 1868898 TACCCGAGCAAGACT GGCGCGCGCC CTCC GGCGCGCGCC TTTGTCTTTGAAGGG Rpal_1743 1870157 - 1869189 - | transcriptional regulator, LysR family Rpal_1744 1870751 - 1871440 + | response regulator receiver protein Rpal_1745 1871462 - 1872298 + | response regulator receiver protein Rpal_1746 1872314 - 1875025 + | multi-sensor hybrid histidine kinase Rpal_1747 1875226 - 1876683 + | Ribulose-bisphosphate carboxylase Rpal_1748 1876697 - 1877119 + | Ribulose-bisphosphate carboxylase Rpal_1749 1877122 - 1878048 + | CbbX protein TERM 1352 1878067 - 1878031 - T 74 -13 -3.33696 | gap 1, opp_overlap 1878044 GTGTTCGGGAAGGAA GACG-GTCGCGACCGGT GAGC ATCGGTCGCGCCACGTC ACGCTGATGCTCGTC Rpal_1750 1879080 - 1878106 - | transcriptional regulator, LysR family TERM 1353 1880137 - 1880176 + G 78 -15.6 -3.15249 | CCGGTTCGATGTTTT CGCCGTCAGCATCAGCCG TCAC CGGCTGACGCCGGCGACG TTCATCGACGATCTG Rpal_1751 1879217 - 1880266 + | Nitrilase Rpal_1752 1880342 - 1881658 + | putative UreA/short-chain amide transport system substrate-binding protein Rpal_1753 1881667 - 1882542 + | inner-membrane translocator Rpal_1754 1882539 - 1884404 + | ABC transporter related TERM 1354 1884477 - 1884530 + G 73 -14 -3.09635 | gap 3, opp_overlap 1884518, overlap 1884480 CCGGGTCGAGCAGGG CG-AG-GTGGTGGCCTTGCTGG-GCCG CAA CGGCGCCGGCAAGACGACCACGCTGCG TTCGATCATGGGCGT TERM 1355 1884480 - 1884526 + G 71 -14.5 -2.55544 | gap 2, opp_overlap 1884518, overlap 1884477 GGTCGAGCAGGGCGA G-GTGGTGGCCTTGCTGG-GCCG CAA CGGCGCCGGCAAGACGACCACGC TGCGTTCGATCATGG Rpal_1755 1884391 - 1885095 + | ABC transporter related TERM 1356 1885093 - 1885147 + T 100 -22.3 -3.14463 | gap 2 CTCGGCGTCGCGTCC TGA-CGCGG-GGCCGGTGCGGCAAGGT TTC GTCTCGCCGCACCGGCCGTCGCGATCA TTGCTGCAGCGCCTT Rpal_1756 1885927 - 1885145 - | alpha/beta hydrolase fold TERM 1357 1885243 - 1885259 + g 70 -10.1 -3.72324 | overlap 1885230 ATCCCGCGATCGCGG CGGCGAG GGT CTTGCCG TTCTTGGTCGGGGTC Rpal_1757 1887226 - 1885931 - | O-acetylhomoserine/O-acetylserine sulfhydrylase Rpal_1758 1889495 - 1887378 - | Oligopeptidase B Rpal_1759 1889626 - 1890501 + | dihydrodipicolinate synthetase Rpal_1760 1890772 - 1893102 + | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 1358 1893164 - 1893130 - f 76 -9.3 -3.9777 | gap 2, overlap 1893132 1893136 CGCAATACCGACAAA GACACACCGGCGCATGC TAT GC-TGCGCCGGTTCG-C GCGCGGGAGAGATCG TERM 1359 1893163 - 1893132 - f 77 -13 -3.57639 | gap 1, overlap 1893130 1893136 CAATACCGACAAAGA CACACCGGCGCATGC TAT GC-TGCGCCGGTTCG CGCGCGGGAGAGATC TERM 1360 1893159 - 1893136 - f 80 -14.6 -3.23737 | gap 1, overlap 1893132 1893130 ACCGACAAAGACACA CCGGCGCATGC TAT GC-TGCGCCGG TTCGCGCGCGGGAGA Rpal_1761 1893180 - 1893794 + | LemA family protein TERM 1361 1894440 - 1894426 - g 72 -8.5 -4.08064 | AATGGCTTCTTAAAA GCGGC GCTCG GCCGC GTTGCGGCCTCGGGG Rpal_1762 1893799 - 1894722 + | protein of unknown function DUF477 TERM 1362 1894778 - 1894795 + G 72 -8.3 -4.08767 | overlap 1894779 1894785 CTGTTCACCAGCCGC GGCGCGG TGCA CCGCGCG TTTTCGCCGGATGCG Rpal_1763 1894736 - 1895233 + | protein of unknown function DUF477 TERM 1363 1895287 - 1895239 - T 86 -16 -3.13522 | gap 1, overlap 1895237 AGTCGTGTAGTAACA CGGCGGCATCCCACCTCTCCCCG CAAG CGGGGAGAGG-GAGAAAGCACCG ACGCCTGGCCTTCGA Rpal_1764 1895926 - 1895315 - | Glutathione S-transferase domain TERM 1364 1896195 - 1896175 - g 71 -13.9 -2.9155 | overlap 1896170 TCGGTGAACAGCAGA CCGGCGCGG CCG CCGCGACGG ACGGAGCGCAGGCGA Rpal_1765 1896135 - 1897106 + | hypothetical protein TERM 1365 1897168 - 1897129 - T 81 -13.6 -3.55444 | gap 1, opp_overlap 1897135, overlap 1897130 GCCTCATTCTTGAAA CTTTAACGGCGCCGGCTAT GAG ACAGCCGGCGCCGTTTT-G ATTTGGCTTTGCCGC TERM 1366 1897168 - 1897130 - T 72 -13.8 -2.73124 | opp_overlap 1897135, overlap 1897129 CCTCATTCTTGAAAC TTTAACGGCGCCGGCTAT GAG ACAGCCGGCGCCGTTTTG ATTTGGCTTTGCCGC TERM 1367 1897135 - 1897163 + T 100 -20.3 -4.59424 | opp_overlap 1897129 1897130 TTCTTGAAACTTTAA CGGCGCCGGCTAT GAG ACAGCCGGCGCCG TTTTGATTTGGCTTT TERM 1368 1897206 - 1897247 + T 71 -10.8 -3.53012 | gap 1, opp_overlap 1897223, overlap 1897207 TGCAGAGTTGTGCAG GCGCCCGCCGGACGATAGC GATTA GTTGTCG-CCGGCGCGCGA TTTCCGAACGGCGCG TERM 1369 1897207 - 1897246 + T 75 -14.3 -2.71712 | gap 1, opp_overlap 1897223, overlap 1897206 GCAGAGTTGTGCAGG CGCCCGCCGGACGATAGC GATTA GTTGTCG-CCGGCGCGCG ATTTCCGAACGGCGC Rpal_1766 1898036 - 1897263 - | oxidoreductase FAD/NAD(P)-binding domain protein Rpal_1767 1899563 - 1898355 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1370 1898446 - 1898467 + g 72 -12.9 -3.17794 | overlap 1898445 CTGTGCTCGCCGACG CCCGGCGGC TTGC GCGGCCGGG TCTTGGTGCTGCCTT Rpal_1768 1902736 - 1899728 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 1371 1899754 - 1899776 + g 78 -15.6 -3.14344 | opp_overlap 1899750, overlap 1899770 CTGTCAGCAGAGCGG CATTGCCGCC GGC GGCGGCAGTG TTGATCGACACCGTC TERM 1372 1900641 - 1900608 - G 100 -23.3 -2.78384 | gap 1 TCGCCTTGCACCAGA TGCAGCGCAGCCGGCG GCA CGCCGGCTGCG-TGCA ACAGGCGCACCGCGA TERM 1373 1901103 - 1901130 + g 70 -10.4 -3.70902 | TCCGGCGTGGTGGAC GCGACCGTCGGC AGCG GCCGGCGTGCGC TTTCGATGTCGCCGA Rpal_1769 1902881 - 1903528 + | hypothetical protein Rpal_1770 1905322 - 1903553 - | adenylate/guanylate cyclase TERM 1374 1903907 - 1903962 + g 74 -12.6 -3.53012 | gap 3 ATTGAGTTCATCGAT CGCCGCGCCGATGGCC-GCGGCAGCGC GAACG GCGTTACGGCAGGCC-TC-GCGCGGTG TTTCGGCAAGCCCGA TERM 1375 1905280 - 1905292 + g 95 -6.3 -5.4756 | overlap 1905265 GCTTTTTCCCGCGGG CAGAA GCG TTCTG TTTTTTGTTCGGCTT Rpal_1771 1906636 - 1905527 - | hypothetical protein TERM 1376 1906482 - 1906519 + g 72 -12 -3.5394 | gap 3, overlap 1906488 1906513 GGCGGGGGGGGCGGT GCGG-CGCC-GGCC-GCAG ACG CGGCAGGCCTGGCGTCCGC TTTCGCGGACGGTTT Rpal_1772 1908102 - 1906633 - | protein of unknown function DUF463 YcjX family protein TERM 1377 1908494 - 1908514 + G 70 -13.3 -3.05844 | TGATCGCCGCCACCG CGCTGGTCA CGC TGACCGGCG TGTTCGCATCCACGC Rpal_1773 1908346 - 1909041 + | Hly-III family protein TERM 1378 1909238 - 1909260 + G 78 -14.1 -3.60098 | CGCGCCGAAGCGGTC GCCGCGTCG ATCGG CGGCGCGGC TTTCAAGTGCGACGT TERM 1379 1909528 - 1909561 + G 77 -15.9 -3.01712 | CAACACCATCTCGGC GGCGGGGCTGCTGTC GCAG GTCGGCAGCCCGGCC TATTCGGCCACCAAG Rpal_1774 1909100 - 1909900 + | short-chain dehydrogenase/reductase SDR TERM 1380 1910042 - 1910066 + F 90 -13.6 -4.02817 | GCGTCTGTTATGCGA TCGCACCGTC GTCCG GGCGGTGCGA TTCTTGTTATCGGCA Rpal_1775 1910098 - 1910382 + | hypothetical protein TERM 1381 1910396 - 1910423 + T 71 -9 -3.77464 | overlap 1910417 AAAGGTCAGGCTGCC CGCACGATCTCG CGGA CGTGGTCGAGCG TTTGCTCGATCATGT Rpal_1776 1911468 - 1910386 - | aromatic amino acid beta-eliminating lyase/threonine aldolase TERM 1382 1911742 - 1911723 - R 100 -16.4 -5.28942 | opp_overlap 1911723 CAGCGCAAACAAAAA GGCCCCGG CGAA CCGGGGCC TTAATGCATCGGACT TERM 1383 1911723 - 1911742 + r 86 -16.4 -3.18383 | opp_overlap 1911723 CAGCGCAAACAAAAA GGCCCCGG CGAA CCGGGGCC TTAATGCATCGGACT Rpal_1777 1912398 - 1911781 - | RNA-binding S4 domain protein TERM 1384 1912277 - 1912303 + g 70 -13.6 -3.02461 | GACAGCTTGCCCTTG CGGCGCTGGCCG TGC TGGCCGGGGCCG TATTCGCGGCGGTTG TERM 1385 1912542 - 1912512 - R 89 -16.1 -3.53444 | gap 1, opp_overlap 1912532, overlap 1912517 1912529 CCACGGGTCGCGAAA CGCAACGCGGGCCG AAAC CGGCCCGCGA-GCG GGGGCTTTCTAGGGG TERM 1386 1912538 - 1912517 - R 93 -18.7 -3.27525 | opp_overlap 1912532, overlap 1912512 1912529 GGTCGCGAAACGCAA CGCGGGCCG AAAC CGGCCCGCG AGCGGGGGCTTTCTA Rpal_1778 1913364 - 1912588 - | hypothetical protein Rpal_1779 1913759 - 1913364 - | Cupin 2 conserved barrel domain protein Rpal_1780 1914605 - 1913811 - | glutamate racemase Rpal_1781 1915176 - 1914688 - | thioesterase superfamily protein TERM 1387 1915954 - 1915930 - g 75 -2.8 -4.83615 | gap 1, overlap 1915931 CATTCTGGAGAAAAA TCCGAAC-AGC CCCG GCTCGCTCGGC ATCGCGATCTCCGAA Rpal_1782 1915331 - 1916695 + | pyridoxal-phosphate dependent TrpB-like enzyme TERM 1388 1916764 - 1916715 - f 100 -17.2 -3.6715 | gap 1, overlap 1916727 GTAGCCAACCGCAAA GCACTGACCCAACCTCTCCCCGC CCTGT GCGGGGAGAGGCCGGATT-GCGC AGCAATCCGGTGAGG TERM 1389 1916753 - 1916727 - f 93 -19.5 -3.09208 | overlap 1916715 AAAGCACTGACCCAA CCTCTCCCCGC CCTGT GCGGGGAGAGG CCGGATTGCGCAGCA TERM 1390 1917000 - 1917016 + F 78 -2.9 -5.00616 | overlap 1916993 GCTAAGTTCTCTAAC TGCTGCA GTT TGCGTCA TTTTTTGGGGAGCGG TERM 1391 1917447 - 1917463 + G 74 -7.9 -4.26188 | overlap 1917457 GTGGCAAGGGCGGTC CGCTCCG TGG CTGAGCG TTTTGGCTCTGTCGC Rpal_1783 1917033 - 1917983 + | TIR protein Rpal_1784 1917986 - 1918447 + | hypothetical protein TERM 1392 1918801 - 1918775 - f 93 -19.5 -3.08312 | AAGGCACTGACCCAA CCTCTCCCCGC TCTGT GCGGGGAGAGG TCGGATTGCGCAGCA Rpal_1786 1919146 - 1921356 + | phosphoribosylformylglycinamidine synthase II TERM 1393 1921586 - 1921552 - T 86 -16.5 -3.14132 | gap 1 TTGGGTGGCTACTAA TTCCGGGCTCGCGAGC TGAC GCTCGCGC-CCCGGAA TGACGGAGGAAGGGT Rpal_1787 1922783 - 1921602 - | acyltransferase 3 TERM 1394 1921849 - 1921835 - G 74 -7.8 -4.28361 | overlap 1921836 GGAAGCGCAGGAAAA CCGCCA GGA TGGCGA AGATGATCGCGGCGC TERM 1395 1922365 - 1922340 - G 70 -10.3 -3.67102 | opp_overlap 1922338 1922340 1922341 1922343, overlap 1922334 1922341 CCACAGAAACCACAA CGGTCCGCTCG GCCA CGGGCCGACCG TGATCATGTTCTCGT Rpal_1788 1923220 - 1922858 - | protein of unknown function DUF427 Rpal_1789 1923383 - 1923619 + | BolA family protein Rpal_1790 1924218 - 1923694 - | transcriptional regulator, MarR family Rpal_1791 1924773 - 1924402 - | hypothetical protein TERM 1396 1925213 - 1925198 - g 70 -2.4 -4.59773 | overlap 1925200 CCGTATCGGGAAAAA GCCCAC CAGC GCGGTC CCGGTTTCTGCTGCG Rpal_1792 1924892 - 1925614 + | hypothetical protein TERM 1397 1925621 - 1925653 + T 74 -10.6 -3.80841 | overlap 1925622 CACGCCTGAGCCCGA C-GCACCTGCGTCGCG GCG CGCGACGC-GCTGCTG TTTACTCGTAGTCCT TERM 1398 1925622 - 1925651 + T 83 -14.3 -3.48738 | gap 1, overlap 1925621 ACGCCTGAGCCCGAC GCACCTGCGTCGCG GCG CGCGACGC-GCTGC TGTTTACTCGTAGTC Rpal_1793 1926743 - 1925670 - | fatty acid desaturase Rpal_1794 1928078 - 1927098 - | methyltransferase TERM 1399 1928096 - 1928108 + r 74 -10.5 -3.76641 | GCGATCCTCCGGCCG CGCGC TTG GCGCG TTTAGATGTTCAAAT Rpal_1795 1929376 - 1928123 - | protein of unknown function DUF323 TERM 1400 1928680 - 1928707 + g 77 -3.4 -4.93365 | gap 1 GCCGGGCCAGTCTGA CCGGTCCCACC AGCGCGC GGTGC-ACCGG TTTTTCGTTGTCGAA Rpal_1796 1929667 - 1929993 + | glutaredoxin-like protein Rpal_1797 1929990 - 1930532 + | Appr-1-p processing domain protein Rpal_1798 1930592 - 1931872 + | beta-lactamase Rpal_1799 1933511 - 1931883 - | thiamine pyrophosphate domain protein TPP-binding TERM 1401 1933727 - 1933777 + r 70 -10.6 -3.55444 | gap 3, overlap 1933727 1933751 CCCCCTCACCCGACC G-GCTACGCCGGTCGACCTCTCCCC GCGC GGGGAGAGGTTAAC-G-CGTGGCGC TTTACCAGCTCGCCG Rpal_1800 1934636 - 1933779 - | hypothetical protein Rpal_1801 1935743 - 1934649 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 1402 1935908 - 1935857 - R 91 -18 -3.14931 | gap 1, opp_overlap 1935860 CCGATGCCGGATCAA CAGCTCGGGATTCCGGGTTCGCCGC TAC GCGGCGC-CCCGGAATGACGAGTTG ATGTTACCGGGTGCA TERM 1403 1935860 - 1935905 + r 93 -18.3 -3.36452 | gap 1, opp_overlap 1935857 ATGCCGGATCAACAG CTCGGGATTCCGGGTTCGCCGC TAC GCGGCGC-CCCGGAATGACGAG TTGATGTTACCGGGT Rpal_1802 1937116 - 1935944 - | acyl-CoA dehydrogenase domain protein Rpal_1803 1938416 - 1937151 - | cytochrome P450 TERM 1404 1938366 - 1938389 + g 70 -5.9 -4.1721 | gap 1, overlap 1938365 CGCATAGGCTTCCTC GC-GCGCCGC CCGCA GCCGCGCCGC TTTTCCGGTCTCGAT Rpal_1804 1938764 - 1939936 + | acyl-CoA dehydrogenase domain protein TERM 1405 1939930 - 1939947 + F 71 -11.3 -3.53091 | opp_overlap 1939929 1939927 GCTGTTCACCAAGAC GGCGTGA GGCG TCACGCC TTTCAAGGGCGCCAT TERM 1406 1939950 - 1939976 + F 91 -16.6 -3.63627 | overlap 1939951 GAGGCGTCACGCCTT TCAAGGGCGCCA TCT TGGCGCCCTTGC TTTGACATCTGCGGC TERM 1407 1939951 - 1939975 + F 90 -20.1 -2.77962 | overlap 1939950 AGGCGTCACGCCTTT CAAGGGCGCCA TCT TGGCGCCCTTG CTTTGACATCTGCGG TERM 1408 1940775 - 1940787 + G 77 -5.5 -4.62302 | overlap 1940773 CGTCGCGGACACCCG GGTCG CTC CGATC TTTTTGCACGTGTTG Rpal_1805 1940032 - 1940826 + | Methyltransferase type 11 Rpal_1806 1941647 - 1940823 - | putative exported protein of unknown function TERM 1409 1941241 - 1941279 + g 73 -12.5 -3.37796 | gap 1 TTGCCGAGGTTGCGG TCGCGGACGAGGTGGACG GTGA CGTTGGCCTCGTCCG-GA TTGTCGGTCATCGCG Rpal_1807 1942297 - 1941716 - | ErfK/YbiS/YcfS/YnhG family protein TERM 1410 1942393 - 1942342 - H 71 -13.5 -2.58579 | opp_overlap 1942375, overlap 1942341 CGAACTGGCCATAAT CGCGGCGATTGCGCAAGCCGGCG GCTGTA CGTCGGCGCACGCGTTCGCCGCA GTCCTGCCGCGCGCC Rpal_1808 1942478 - 1944022 + | thiamine pyrophosphate domain protein TPP-binding TERM 1411 1944028 - 1944046 + F 83 -17.4 -2.56046 | opp_overlap 1944023, overlap 1944018 1944017 GCAGATGTAATGCCA CGGGCGGC CCT GCCGCCCG TCCGTTCCCGTTTCG Rpal_1809 1944135 - 1944566 + | hypothetical protein TERM 1412 1944598 - 1944626 + T 74 -5.9 -4.4009 | overlap 1944599 CTAACGCCCCCCGTA GGATGGGTTGAGC GCA GCGAAACCCATCG TTTTGTCGGATGCAG Rpal_1810 1945052 - 1944732 - | hypothetical protein Rpal_1812 1947559 - 1946279 - | hypothetical protein TERM 1413 1946332 - 1946372 + g 70 -10.3 -3.73534 | gap 1, overlap 1946330 GCGCGCGGATACGGT CGGCGAGCGTCCCGCCGG CCACCA CCGGGGTGACGC-CGGCG TTCTTGGTGCCGTTG TERM 1414 1946723 - 1946753 + g 77 -15.3 -2.98813 | overlap 1946716 1946725 1946726 1946749 1946752 CAGCTCGCCGACGGT GCGCAGCGCCGCC TCGTT GGCGGCGCGGAGC TGGTTGTTCTCGAAT Rpal_1813 1948393 - 1947800 - | hypothetical protein TERM 1415 1948936 - 1948920 - g 80 -9.4 -4.26076 | CGACCGCGAGGAAAA CCGCGA TGCCT TCGCGG CCAATCCGGAGCGTT Rpal_1814 1948501 - 1949007 + | hypothetical protein Rpal_1815 1949843 - 1949016 - | inositol monophosphatase TERM 1416 1949261 - 1949236 - G 76 -14.7 -3.1876 | AATTTCAGCGACGAA CCCAGCGTCGT GCGC ACGGCGCTGGG GCGGGCGTCGATGAA TERM 1417 1949867 - 1949888 + H 70 -10.1 -3.66784 | overlap 1949860 1949863 1949868 GTCATCCTCGGTCGG TGGTCCGGT TTGT GCCGGACCG TTGTGTTGGCACTGC Rpal_1816 1949977 - 1950633 + | hypothetical protein TERM 1418 1951524 - 1951502 - g 70 -11.2 -3.55622 | overlap 1951503 GCCAAGCCCGCCAAA CCCGCCGCCA AGC CGGCGGCGAA GAAGTCCGGCGGCGA Rpal_1817 1950824 - 1953637 + | CheA signal transduction histidine kinase TERM 1419 1953797 - 1953823 + G 73 -12.9 -3.31144 | GGCTGACCCGGGTGC CGCTGGCGCCG GATGA CGTCGCCGGCG TTCTGAACCTGCGCG Rpal_1818 1953634 - 1954134 + | CheW protein Rpal_1819 1954202 - 1954567 + | response regulator receiver protein Rpal_1820 1954709 - 1955821 + | response regulator receiver modulated CheB methylesterase TERM 1420 1956428 - 1956466 + G 76 -6.1 -4.46112 | gap 1 ACGACTTCTCGTCGC TCGGCACGTT-CGACA TCGTGTTC TGCCGCAACGTGCTGA TTTATTTCGATCAGA Rpal_1821 1955818 - 1956696 + | MCP methyltransferase, CheR-type TERM 1421 1956943 - 1956924 - T 100 -12.8 -5.75538 | CCCAAAAAACAAAAA CCCCGCCA TTTG CGGCGGGG TCAAGGACCACTCGG Rpal_1822 1957698 - 1956997 - | two component transcriptional regulator, winged helix family Rpal_1823 1958066 - 1959391 + | flagellar protein export ATPase FliI TERM 1422 1959818 - 1959804 - g 70 -6.4 -4.30177 | GACGAGATGAAGAAA GTCGAA TTG CTCGAC GAGCGCGACCAGGCG Rpal_1824 1959501 - 1959929 + | flagellar export protein FliJ TERM 1423 1959977 - 1959953 - f 71 -11.3 -3.53343 | opp_overlap 1959955, overlap 1959955 AACTTTGCGTCGAAA CAGCCCGGGCC CTC GGTCCGGGCTT TCGTTTGCGGTATCC TERM 1424 1959955 - 1959975 + F 100 -16.1 -4.07647 | opp_overlap 1959953 1959955 CTTTGCGTCGAAACA GCCCGGGCC CTC GGTCCGGGC TTTCGTTTGCGGTAT TERM 1425 1959975 - 1959955 - f 77 -13.9 -3.34398 | opp_overlap 1959955, overlap 1959953 CTTTGCGTCGAAACA GCCCGGGCC CTC GGTCCGGGC TTTCGTTTGCGGTAT Rpal_1825 1960105 - 1960653 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_1826 1960653 - 1961600 + | hypothetical protein TERM 1426 1961715 - 1961675 - T 74 -14.9 -2.57795 | opp_overlap 1961680 1961686, overlap 1961680 1961686 CTCATCATCAACGCA CAAAAGAAAAACGCCCG TGGGGAG CGGGCGTTTTCCTTTGG GTCTCCACCTGGGGT TERM 1427 1961680 - 1961710 + T 78 -11.9 -3.7108 | opp_overlap 1961675 1961680 1961686, overlap 1961686 CATCAACGCACAAAA GAAAAACGCCCGT GGGGA GCGGGCGTTTTCC TTTGGGTCTCCACCT TERM 1428 1961710 - 1961680 - T 100 -13.4 -4.48221 | opp_overlap 1961680 1961686, overlap 1961675 1961686 CATCAACGCACAAAA GAAAAACGCCCG TGGGGAG CGGGCGTTTTCC TTTGGGTCTCCACCT TERM 1429 1961686 - 1961704 + T 91 -9.5 -4.57516 | opp_overlap 1961680 1961675 1961686, overlap 1961680 CGCACAAAAGAAAAA CGCCCGT GGGGA GCGGGCG TTTTCCTTTGGGTCT TERM 1430 1961704 - 1961686 - T 100 -8.8 -5.54907 | opp_overlap 1961686 1961680, overlap 1961680 1961675 CGCACAAAAGAAAAA CGCCCG TGGGGAG CGGGCG TTTTCCTTTGGGTCT Rpal_1827 1961998 - 1961798 - | putative exported protein of unknown function Rpal_1828 1964462 - 1962330 - | flagellar biosynthesis protein FlhA Rpal_1829 1964725 - 1965969 + | major facilitator superfamily MFS_1 TERM 1431 1966000 - 1966029 + T 84 -16.4 -3.01712 | opp_overlap 1966001, overlap 1966003 GCTCACCAGAACGAA AGAGCCGCGCGG CTGACA CCGCGCGGCTCG TGTTCACAAGGCGAG TERM 1432 1966028 - 1966001 - T 100 -20.6 -4.02108 | opp_overlap 1966000 1966003 CTCACCAGAACGAAA GAGCCGCGCGGC TGAC ACCGCGCGGCTC GTGTTCACAAGGCGA TERM 1433 1966003 - 1966026 + T 81 -16.7 -2.73875 | opp_overlap 1966001, overlap 1966000 CACCAGAACGAAAGA GCCGCGCGG CTGACA CCGCGCGGC TCGTGTTCACAAGGC Rpal_1830 1967752 - 1966061 - | methyl-accepting chemotaxis sensory transducer TERM 1434 1966880 - 1966914 + g 73 -3.5 -4.66938 | GGAGGCTTCGAATTG TCGGGTCGCGGC-GTCG ATG CGATGGCCACG-CGCGA TTTTGTCTTCGGAAT TERM 1435 1967541 - 1967583 + g 70 -10.6 -3.53012 | gap 1, opp_overlap 1967566 GTGGCTTCGAGCAGA TGCGCGCGCAGCGTGTTGC GATACA GCGCCACGTTG-GTGCGCA TTTCGCCGAGAACGC TERM 1436 1967995 - 1968011 + H 76 -8 -4.30576 | AGTGGACGCTGAGTC CGATCG ATGCA CGATCG TTTTCGTAGTCGCCA Rpal_1831 1968531 - 1969589 + | transcriptional regulator, AraC family TERM 1437 1969935 - 1969916 - f 70 -10.6 -3.58343 | TTCAGCACCGGGAAA GCGGCCGC CTTT GCGGCCTC CGTGCGCTGACAGAA Rpal_1832 1969970 - 1971484 + | diguanylate cyclase Rpal_1833 1971636 - 1971517 - | hypothetical protein Rpal_1834 1971681 - 1972547 + | iron permease FTR1 Rpal_1835 1973248 - 1972538 - | transglutaminase domain protein Rpal_1836 1973504 - 1973277 - | hypothetical protein TERM 1438 1973413 - 1973470 + g 82 -12 -4.09511 | gap 1, overlap 1973414 TTGCACTGGTTGTGC GCGCCGCCGTCCTCTTCGGAGACGATC TCGAT GGCCGTCTTC-AACAGGGCGGTGGCGA TTTTGCGGACGTCTT TERM 1439 1973414 - 1973469 + g 77 -15.5 -3.05224 | gap 1, overlap 1973413 TGCACTGGTTGTGCG CGCCGCCGTCCTCTTCGGAGACGATC TCGAT GGCCGTCTTC-AACAGGGCGGTGGCG ATTTTGCGGACGTCT Rpal_1837 1973872 - 1973603 - | hypothetical protein TERM 1440 1973902 - 1973939 + r 75 -11.9 -3.65224 | opp_overlap 1973898 1973902 GTTCCGGAAAAGGAA CGTTCCCGACGCGCTGA GGTT TCATCGCGCCGCGGACG TTGTTGGCGTCAGCT TERM 1441 1973939 - 1973902 - R 75 -11.9 -3.66908 | opp_overlap 1973902, overlap 1973898 GTTCCGGAAAAGGAA CGTTCCCGACGCGCTGA GGTT TCATCGCGCCGCGGACG TTGTTGGCGTCAGCT Rpal_1838 1974950 - 1973949 - | alpha/beta hydrolase fold Rpal_1839 1975103 - 1976365 + | efflux transporter, RND family, MFP subunit Rpal_1840 1976362 - 1977588 + | protein of unknown function DUF214 Rpal_1841 1977581 - 1978261 + | ABC transporter related TERM 1442 1978342 - 1978305 - T 84 -11.2 -4.15833 | overlap 1978306 AGCATCATCCCAAAA GCTGATGCGCGGGCCC GCTTCA GAACCCGCGCATCCGT CAATCGCTGCAGTGC TERM 1443 1978341 - 1978306 - T 78 -14.7 -3.09018 | overlap 1978305 GCATCATCCCAAAAG CTGATGCGCGGGCCC GCTTCA GAACCCGCGCATCCG TCAATCGCTGCAGTG Rpal_1842 1979578 - 1978361 - | hypothetical protein Rpal_1843 1980183 - 1981004 + | protein of unknown function DUF1078 domain protein Rpal_1844 1981876 - 1981136 - | hypothetical protein Rpal_1845 1982223 - 1983188 + | hypothetical protein Rpal_1846 1983232 - 1985118 + | D-tyrosyl-tRNA(Tyr) deacylase Rpal_1847 1985212 - 1985598 + | putative rhizosphere induced protein TERM 1444 1985602 - 1985650 + T 73 -11 -3.66666 | gap 2, opp_overlap 1985606 1985607, overlap 1985603 GTGCAGCGCTGAGCA TCAAGTGCAGGTTGGCGGTCCACC CGT GG-GGATCGCCAACCTGC-CGCGC TTTGAGAATTTTACC TERM 1445 1985603 - 1985649 + T 75 -14.5 -2.79518 | gap 2, opp_overlap 1985606 1985607, overlap 1985602 TGCAGCGCTGAGCAT CAAGTGCAGGTTGGCGGTCCACC CGT GG-GGATCGCCAACCTGC-CGCG CTTTGAGAATTTTAC TERM 1446 1985646 - 1985606 - T 89 -17 -3.21218 | gap 2, opp_overlap 1985603 1985602, overlap 1985607 AGCGCTGAGCATCAA GTGCAGGTTGGCGGTCCACC CGT GG-GGATCGCCAACCTGC-C GCGCTTTGAGAATTT TERM 1447 1985646 - 1985607 - T 83 -17.2 -2.52516 | gap 1, opp_overlap 1985603 1985602, overlap 1985606 GCGCTGAGCATCAAG TGCAGGTTGGCGGTCCACC CGT GG-GGATCGCCAACCTGCC GCGCTTTGAGAATTT Rpal_1848 1986063 - 1985602 - | hypothetical protein Rpal_1849 1987211 - 1986198 - | aldo/keto reductase Rpal_1850 1988580 - 1987372 - | putative ABC transporter, substrate binding protein Rpal_1851 1988683 - 1989378 + | high-affinity nickel-transporter Rpal_1852 1990623 - 1989409 - | diguanylate cyclase Rpal_1853 1990996 - 1991193 + | putative histon H1 TERM 1448 1991237 - 1991190 - f 78 -11.9 -3.74713 | gap 1, overlap 1991194 CAAAAAGGCTAAGAA GTAACTGCCA-CGGAGGCGCCC CGCGC GGGCGCCTCCGCTGGCCGCCGG CGAGGATCGGCGGCG TERM 1449 1991233 - 1991194 - f 100 -21.5 -3.5456 | gap 1, overlap 1991190 AAGGCTAAGAAGTAA CTGCCA-CGGAGGCGCCC CGCGC GGGCGCCTCCGCTGGCCG CCGGCGAGGATCGGC Rpal_1854 1991402 - 1991764 + | queuosine biosynthesis protein QueD Rpal_1855 1992421 - 1991831 - | Hemerythrin HHE cation binding domain protein Rpal_1856 1995484 - 1992563 - | heavy metal translocating P-type ATPase TERM 1450 1995579 - 1995569 - g 81 -8.2 -4.56597 | GCGTCGTGTCAAAAA CGGC TGG GCCG GATCGAAGGGCAGGT Rpal_1857 1995536 - 1995811 + | protein of unknown function DUF156 Rpal_1858 1996522 - 1995842 - | hypothetical protein Rpal_1859 1997481 - 1996630 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase Rpal_1860 1998051 - 1997509 - | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 1451 1998181 - 1998152 - R 70 -12.9 -2.87132 | gap 1, overlap 1998131 CGCTGGCGTTAGAGA CGCCTGCCGGCG AGCATGG CGCCGGCAG-CG GCCGGCGCAAGGCAG Rpal_1861 1998509 - 1998207 - | hypothetical protein TERM 1452 1998739 - 1998709 - R 100 -16.3 -4.26076 | gap 1, opp_overlap 1998716, overlap 1998710 1998712 TGAGCTGTATCAAAA CGACAAACGCGCGC CGAA GCGCGCGTTTGT-G TAGCTGGTAAAATTG TERM 1453 1998739 - 1998710 - R 86 -16.5 -3.15324 | opp_overlap 1998716, overlap 1998709 1998712 GAGCTGTATCAAAAC GACAAACGCGCGC CGAA GCGCGCGTTTGTG TAGCTGGTAAAATTG TERM 1454 1998737 - 1998712 - R 93 -19.1 -3.13504 | opp_overlap 1998716, overlap 1998709 1998710 GCTGTATCAAAACGA CAAACGCGCGC CGAA GCGCGCGTTTG TGTAGCTGGTAAAAT TERM 1455 1998716 - 1998733 + r 90 -14.1 -4.07124 | opp_overlap 1998712 1998709 1998710 TATCAAAACGACAAA CGCGCGC CGAA GCGCGCG TTTGTGTAGCTGGTA Rpal_1862 2000113 - 1998764 - | oxygen-independent coproporphyrinogen III oxidase TERM 1456 1999997 - 1999975 - G 71 -9 -3.76607 | overlap 1999969 GAAGATACAGCGAAA CCGGCTCGTC GGT GTCGAGCTGG GCGAGCCAGCCGCGA Rpal_1863 2000852 - 2000142 - | bacteriochlorophyll 4-vinyl reductase TERM 1457 2000667 - 2000724 + gr 77 -13.5 -3.34398 | gap 3, opp_overlap 2000680 2000721 2000723, overlap 2000670 2000716 GACCGGGCGTTCGTC GACCATCACCGAAGGCGGAGCGGCGAGC CAGTC GCTCGCCGC-C-GCCT-CGGAGAAGATC TCTTTCGCGGCCGGC TERM 1458 2000670 - 2000721 + gr 71 -13.8 -2.54325 | gap 3, opp_overlap 2000680, overlap 2000667 2000716 CGGGCGTTCGTCGAC CATCACCGAAGGCGGAGCGGCGAGC CAGTC GCTCGCCGC-C-GCCT-CGGAGAAG ATCTCTTTCGCGGCC TERM 1459 2000712 - 2000680 - GR 75 -13.5 -3.10715 | gap 2, opp_overlap 2000670 2000667 TCGACCATCACCGAA GGCGGAGCGGCGAGC CAGTC GCTCGCCGC-C-GCC TCGGAGAAGATCTCT Rpal_1864 2002521 - 2000824 - | magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase TERM 1460 2001513 - 2001523 + gr 73 -8.2 -4.02817 | CGGCTTCGCGGAGCA GGCG GAT CGCC TTCTTGTTGTCGGAG Rpal_1865 2003107 - 2002679 - | hypothetical protein TERM 1461 2003036 - 2003079 + g 76 -2.3 -4.87786 | gap 2, overlap 2003047 2003048 TCCTGCAATCTCTTC CCACTCTCG-GAC-GACGTCG GCGA CGGCTTCTGTCACGGGCGCGG TTTTTGTCGGCTTGC Rpal_1866 2003329 - 2004069 + | metallophosphoesterase Rpal_1867 2004073 - 2005512 + | serine/threonine protein kinase Rpal_1868 2006208 - 2005558 - | transport-associated TERM 1462 2006050 - 2006071 + g 80 -15.9 -3.31461 | GCCTTTGACGCGGCG GGTCGCAGC GATC GCTGCGACC TTGTCCGCATAGCTC TERM 1463 2008118 - 2008089 - g 79 -13.5 -3.63968 | opp_overlap 2008090, overlap 2008071 CGCCAAATGGCTAAA GGCGTGCGCCACG ATTC CGTGGCGGAAGCC GATCGCGTCGCTGAA Rpal_1869 2006587 - 2008938 + | Phosphoketolase Rpal_1870 2009116 - 2009619 + | response regulator receiver protein TERM 1464 2011560 - 2011538 - g 79 -4.7 -4.71426 | overlap 2011539 2011541 CCGCGAGGAAGAAAA GGACGCCGC CCAGC GCACCGCCC TGCAGCGCAAGCTGG TERM 1465 2011982 - 2012009 + G 70 -11.2 -3.62096 | gap 1, opp_overlap 2011952 CGCCACCATCGAGGC GGCGCGGGCCGGC GAA GCCGGTC-GCGGC TTTGCGGTGGTCGCG Rpal_1871 2010264 - 2012414 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Rpal_1872 2012593 - 2015406 + | CheA signal transduction histidine kinase TERM 1466 2015566 - 2015592 + G 73 -12.9 -3.31144 | GGCTGACCCGGGTGC CGCTGGCGCCG GACGA CGTCGCCGGCG TTCTCAACCTGCGCG Rpal_1873 2015403 - 2015903 + | CheW protein Rpal_1874 2015957 - 2016832 + | MCP methyltransferase, CheR-type Rpal_1875 2016844 - 2017158 + | hypothetical protein Rpal_1876 2017387 - 2018637 + | response regulator receiver modulated diguanylate phosphodiesterase Rpal_1877 2021259 - 2018668 - | multi-sensor hybrid histidine kinase TERM 1467 2021369 - 2021383 + H 71 -5.6 -4.2679 | overlap 2021351 2021354 GGACGGGGTTTATCC CCGCGG CCT TTGCGG TTTTGATAGCGCTTG Rpal_1878 2021682 - 2022308 + | two component transcriptional regulator, LuxR family TERM 1468 2022315 - 2022339 + T 88 -14.3 -3.78775 | opp_overlap 2022310 2022309 2022317, overlap 2022335 CCGAAGTAAGCTGAA GACCGGCGG CATCGCA CCGCCGGTC TTTCGTCGTCGGGCG TERM 1469 2022337 - 2022317 - T 73 -12.5 -3.11178 | opp_overlap 2022315 2022335, overlap 2022310 2022309 GAAGTAAGCTGAAGA CCGGCGGCA TCG CACCGCCGG TCTTTCGTCGTCGGG Rpal_1879 2023141 - 2022359 - | short-chain dehydrogenase/reductase SDR TERM 1470 2022462 - 2022488 + g 100 -11.4 -4.56133 | opp_overlap 2022440 2022462, overlap 2022463 GCGGCGCCGAATTCA TCCGGCGTGCCG AAG CGTCCCGCCGGG TTTTCATTCTTCCGC TERM 1471 2022463 - 2022487 + g 71 -12.7 -3.32957 | opp_overlap 2022440 2022462, overlap 2022462 CGGCGCCGAATTCAT CCGGCGTGCCG AAG CGTCCCGCCGG GTTTTCATTCTTCCG TERM 1472 2023940 - 2023996 + G 79 -4.4 -4.7373 | gap 2, opp_overlap 2023968 GGCGCCATCCTCCTG CTCGCC-TCGAACG-CATCGCGCTAC ATGACCG GCAGCGTGGTGACGGTGGATGGCGGG TTTTTGCTGGGGTAG Rpal_1880 2023250 - 2024011 + | short-chain dehydrogenase/reductase SDR TERM 1473 2024917 - 2024867 - g 76 -14.7 -3.18735 | gap 2 GCAAGACGGCAGCAA TGGCACGACGGCGGCCTCCCCCAGC GGA GGTGGAGGAGGC-GCCGGCG-GCAA CAATGGCAACGTGGC Rpal_1881 2024496 - 2029094 + | outer membrane autotransporter barrel domain protein Rpal_1882 2030851 - 2029247 - | glucose-methanol-choline oxidoreductase TERM 1474 2030827 - 2030786 - G 80 -15.7 -3.28712 | GGTGTCTTCCGACAA GCGACCGGCGACGGCGCAG CCGC CGGAGCCGCCGCCGACCAC GACGAAATCCACTGT Rpal_1883 2032355 - 2030922 - | Aldehyde Dehydrogenase TERM 1475 2032750 - 2032766 + H 100 -15.1 -4.85129 | CAGATCAGTGATTAG GCCCGCC TCT GGCGGGC TTTTTCGTGTCTCGT Rpal_1884 2032940 - 2033461 + | GCN5-related N-acetyltransferase Rpal_1885 2033582 - 2033716 + | hypothetical protein TERM 1476 2034880 - 2034917 + G 77 -13.3 -3.53811 | gap 1, overlap 2034884 CACGTCCACTTCATC GACGGGGCGGGCGGGGGC TAT GCGTCCGCC-GCCCTGGC TTTGAAGGCGATGCC Rpal_1886 2033788 - 2034951 + | hypothetical protein Rpal_1887 2035388 - 2034948 - | hypothetical protein Rpal_1888 2036893 - 2035520 - | MATE efflux family protein TERM 1477 2036204 - 2036165 - G 83 -13.4 -3.83205 | ACGCTGCAGACGAAA CGACCGCAGTTGCAGCCG CAGC CGGCTGCGGCCGCTGCCG AGATAGATCAGCAGG Rpal_1889 2037168 - 2038403 + | major facilitator superfamily MFS_1 TERM 1478 2038872 - 2038814 - g 77 -13.1 -3.61398 | gap 1 CCCGTTGTTCAATAA CGCCGCCCAGC-ACTTCAACCACATCCA CTTC TGGAAGTGGATGAAGCCGAACGGCGGCG GCAGCAAGCTGCCGG Rpal_1890 2038605 - 2039201 + | Superoxide dismutase TERM 1479 2039259 - 2039227 - f 81 -16.3 -2.69319 | opp_overlap 2039228 2039233, overlap 2039233 AAGCTCGCACAGAAG CGAAAAGGCGGTCGC GGC GCGGCCGCCTTTTCT TTTGGCATCGAGCCC TERM 1480 2039228 - 2039258 + F 100 -22 -4.13767 | opp_overlap 2039227 2039233, overlap 2039233 AGCTCGCACAGAAGC GAAAAGGCGGTCGC GGC GCGGCCGCCTTTTC TTTTGGCATCGAGCC TERM 1481 2039253 - 2039233 - f 100 -13.9 -4.34267 | opp_overlap 2039228 2039233, overlap 2039227 GCACAGAAGCGAAAA GGCGGTCGC GGC GCGGCCGCC TTTTCTTTTGGCATC TERM 1482 2039233 - 2039253 + F 100 -16.1 -5.09259 | opp_overlap 2039233 2039227, overlap 2039228 GCACAGAAGCGAAAA GGCGGTCGC GGC GCGGCCGCC TTTTCTTTTGGCATC Rpal_1891 2039354 - 2039728 + | CrcB protein Rpal_1892 2040656 - 2039796 - | transcriptional regulator, AraC family TERM 1483 2040439 - 2040424 - G 71 -9 -3.78775 | opp_overlap 2040407 GGCGGCACCACGAAA TGACCG CGTT CGGTCA TCATGGCGGTTACAC TERM 1484 2041181 - 2041171 - g 81 -5.4 -4.82901 | GCTCGCGGAGAAAAA GGTT CTC AACC ATCTCGACAAGTTTT Rpal_1894 2041076 - 2041711 + | pyridoxamine 5'-phosphate oxidase-related FMN-binding Rpal_1897 2043015 - 2042527 - | CinA domain protein TERM 1485 2042578 - 2042560 - G 74 -2.3 -4.72986 | gap 1, opp_overlap 2042565, overlap 2042562 CATTCGCAGCAAAAA CGTCAGCG CGGT CGCGG-CG AACACGTGCATGTTC Rpal_1898 2043876 - 2043133 - | protein of unknown function DUF81 TERM 1486 2044092 - 2044040 - g 72 -4.5 -4.49556 | overlap 2044041 2044047 TTGGCAGGAAACAAA CGAGATACCGTGCTCGCGGCGAAGC CCG GCAACGCCGCGAACCTGATCGCTCC CGATACGACCGGACT Rpal_1899 2044022 - 2045809 + | acyl-CoA dehydrogenase domain protein TERM 1487 2045895 - 2045862 - T 73 -8.2 -3.98083 | opp_overlap 2045862 2045866, overlap 2045858 GAGCGAAGCGACAAA GCAATCCAGCGC TGTGCCCGGG GCTCTGGATTGC TTCGCTTCGCTCGCA Rpal_1900 2047416 - 2045944 - | Amidase TERM 1488 2047764 - 2047782 + r 100 -11.7 -4.62441 | opp_overlap 2047764 CTCCCTTGACTTAAA GCTCCGG CGGTT CCGGAGC TTTCTTTATCTCGGG TERM 1489 2047782 - 2047764 - R 75 -11.7 -3.64703 | opp_overlap 2047764 CTCCCTTGACTTAAA GCTCCGG CGGTT CCGGAGC TTTCTTTATCTCGGG Rpal_1901 2048682 - 2047828 - | hypothetical protein Rpal_1902 2050343 - 2048787 - | AMP-dependent synthetase and ligase TERM 1490 2050440 - 2050428 - R 80 -4.7 -4.93296 | overlap 2050430 GGAGCACGACAAAAA CCGCG CGC CTCGG AGGCCAGCTGGGATT Rpal_1903 2051797 - 2050622 - | acetyl-CoA acetyltransferase TERM 1491 2051047 - 2051090 + g 74 -5.8 -4.45544 | gap 1 CCACGCCGGAGGCGC CGTCGCAGATCTGGCTGGCGG TCG CCGCC-GTCAGCTTGCCGCCG TTTTCGTTGATCAGC TERM 1492 2052382 - 2052396 + G 72 -11.4 -3.54543 | overlap 2052384 2052387 CTGCTTGCGGAGGGT GTCGCC ACC GGCGAC TTTCGCGAAGTCGAT Rpal_1904 2051929 - 2052606 + | transcriptional regulator, TetR family TERM 1493 2052875 - 2052896 + F 82 -11.5 -4.07568 | ACCTCGAACCGGATC GGTAGCGGC CCAA GCCGCGACC TTTTGCCGGCCACAA Rpal_1905 2053063 - 2053821 + | short-chain dehydrogenase/reductase SDR TERM 1494 2053831 - 2053862 + F 83 -15.3 -3.12327 | opp_overlap 2053824, overlap 2053829 CGCTAAACGCGCACT TCTCACCCTTTCC GTTTCG GGAGAGGGTGAGA TCTTCGATCTCCGCC Rpal_1906 2054045 - 2054851 + | Enoyl-CoA hydratase/isomerase TERM 1495 2055264 - 2055309 + G 86 -18.3 -3.10796 | gap 1 TGCGCTGATCATGAT GGC-GGCGATGCAGGCGCGG ATTCCGA CCGCGCCGGTGTCGCCGGCC TATTCGCTGATGAGC Rpal_1907 2054902 - 2056776 + | AMP-dependent synthetase and ligase Rpal_1908 2056943 - 2058070 + | acyl-CoA dehydrogenase domain protein TERM 1496 2058180 - 2058135 - f 70 -12 -3.18023 | gap 2, opp_overlap 2058151, overlap 2058133 2058136 GGATGAGGATGAACA GCTCATGGTTTGAGACGCGCGC GAGA GCGCGCTTCTC--ACCATGAGG CCCCGTCAGGACAAA TERM 1497 2058179 - 2058136 - f 76 -15.5 -2.50492 | gap 2, opp_overlap 2058151, overlap 2058135 2058133 GATGAGGATGAACAG CTCATGGTTTGAGACGCGCGC GAGA GCGCGCTTCTC--ACCATGAG GCCCCGTCAGGACAA TERM 1498 2058151 - 2058166 + F 72 -11.8 -3.31144 | opp_overlap 2058136 2058135 2058133 CTCATGGTTTGAGAC GCGCGC GAGA GCGCGC TTCTCACCATGAGGC Rpal_1909 2058207 - 2059454 + | acyl-CoA dehydrogenase domain protein TERM 1499 2059758 - 2059736 - g 75 -12 -3.63991 | CATCAGCCTGAAGAA TGCCGACATC GTC GAGGTCGGCA AGGCGTGGCAGAAGA Rpal_1910 2059605 - 2060849 + | acyl-CoA dehydrogenase domain protein Rpal_1911 2061016 - 2061714 + | nitroreductase TERM 1500 2061733 - 2061763 + T 70 -13.3 -2.86343 | gap 1, opp_overlap 2061729 CTTCTCAACGAGTCA TTCCGGG-GCGCGC GTCA GCGCGAACCCGGAA TCTGATGCTTGCACT Rpal_1912 2062672 - 2061890 - | Enoyl-CoA hydratase/isomerase TERM 1501 2062784 - 2062765 - H 70 -10 -3.6692 | gap 1, overlap 2062763 2062766 2062776 2062777 GCGGATGGGAAAATA GGCCGGGCA AAC TGCCCG-CC GGCCGGGCGCCCGTC Rpal_1913 2062973 - 2063647 + | cyclic nucleotide-binding protein Rpal_1914 2063659 - 2064543 + | hypothetical protein Rpal_1915 2064794 - 2065198 + | hypothetical protein Rpal_1916 2065472 - 2067682 + | diguanylate cyclase Rpal_1917 2068273 - 2067887 - | hypothetical protein TERM 1502 2068809 - 2068789 - g 72 -6.7 -4.25104 | overlap 2068790 CCTGGCCCATGAAAA GCGCTCGCC GCG GGTGAGCGG TTACACACAGCGCAA Rpal_1918 2068520 - 2068927 + | hypothetical protein Rpal_1919 2069266 - 2068934 - | protein of unknown function UPF0153 Rpal_1920 2069950 - 2069330 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding Rpal_1921 2070052 - 2070969 + | transcriptional regulator, LysR family TERM 1503 2071493 - 2071466 - g 70 -12 -3.35679 | opp_overlap 2071464 2071459 GGCCCGCAGCGACAA GCCGCGACGC TATGAGCT GCGTCACGGC GATGTGCTGGTGTGG Rpal_1922 2070966 - 2071616 + | 2OG-Fe(II) oxygenase Rpal_1923 2072954 - 2071623 - | phenylacetate-CoA ligase Rpal_1924 2073442 - 2072969 - | phenylacetic acid degradation protein PaaD TERM 1504 2074279 - 2074319 + G 73 -11 -3.72695 | overlap 2074272 2074280 GAGTCGAAGCTGCTG CCGCAAGGCGCGCTGCAG CTCGT CTGCGGCGGGCTTGGCGA TTTGCTGGACCACCT TERM 1505 2074280 - 2074318 + G 73 -14.5 -2.83403 | overlap 2074272 2074279 AGTCGAAGCTGCTGC CGCAAGGCGCGCTGCAG CTCGT CTGCGGCGGGCTTGGCG ATTTGCTGGACCACC TERM 1506 2074416 - 2074386 - g 70 -6.1 -4.22652 | gap 1 GGAGACCAGCGAAAA GCTGCGCGC-ACAT CCGA ACGTCGCGCGCCAC AGCATTCGCTTCATC TERM 1507 2075110 - 2075066 - g 73 -15.6 -2.52543 | gap 1 ATGCGGCGGAATCCA CCGGCCACGGCACGCCGCTGC CGGC GCTGCTGCATGGCG-GGCCGG GCCGCGCCGGTGGGG Rpal_1925 2073667 - 2075706 + | phenylacetic acid degradation protein paaN Rpal_1926 2075763 - 2076779 + | Alcohol dehydrogenase zinc-binding domain protein Rpal_1927 2077021 - 2077758 + | hypothetical protein Rpal_1928 2079488 - 2078244 - | RES domain protein TERM 1508 2080169 - 2080181 + r 81 -10.5 -4.11692 | CGCCGCTGGTGGGCG CGCCG TGA CGGCG TTTTCGCGATGGATC Rpal_1929 2081412 - 2080450 - | fatty acid desaturase Rpal_1930 2082688 - 2081465 - | OsmC family protein TERM 1509 2082708 - 2082750 + r 71 -13.7 -2.6574 | AGGCCTCCATGTTGT TGTCATTCCGGA-TTGCGAGC GAA GCTCGCAAGTCCGGAATC-CA TACTCTCCGTCCTTG Rpal_1931 2083532 - 2082867 - | oxidoreductase molybdopterin binding TERM 1510 2083421 - 2083458 + g 82 -16.4 -3.23274 | gap 1, overlap 2083414 GGCCCGGCGGCAGCC GTTGCTCATCCGGCCGG ACATG CCGGCCGG-TGAGAAAC TTGCCTTCTGCCGCC Rpal_1932 2084754 - 2083555 - | cytochrome P450 TERM 1511 2083586 - 2083623 + g 82 -6.1 -4.83615 | gap 1, opp_overlap 2083579, overlap 2083587 AACAACAACGGCAGG CTGCGC-GGTCCACGGAC TGT GCCCTCGGACCAGCGCAC TTTTTGTGACGGGTC TERM 1512 2084079 - 2084100 + g 73 -9.3 -3.96148 | opp_overlap 2084078 GCGAGCCGAGCACAT GGGCGTCCG ACAG CGGTTGCCC TTTATCGTCCCGGGC Rpal_1933 2085050 - 2084823 - | putative ferredoxin Rpal_1934 2086584 - 2085151 - | Amidase TERM 1513 2086350 - 2086389 + g 70 -6.3 -4.25056 | gap 2, opp_overlap 2086371, overlap 2086351 TGAGATCCTTGATCG GCACCGGCAGA-C-CGGCC AGAA GGCCGCGCTCGGCCGGCGG TTTCTTCATCAGCTC Rpal_1935 2086723 - 2087835 + | SbmABacA family protein Rpal_1936 2089227 - 2087851 - | beta-galactosidase TERM 1514 2089265 - 2089283 + r 73 -13.1 -3.19192 | GTCATTTGATACGCC GCGGCGC AGACG GCGCCGC TTGCGTTGAATCAAA Rpal_1937 2090192 - 2089413 - | short-chain dehydrogenase/reductase SDR TERM 1515 2089499 - 2089548 + g 100 -11.9 -4.84359 | opp_overlap 2089497 CGGAGGCCAGATAGG CCATCAGGTCGGCGATCTCGCGC GGTT GCGCGGGGCGGCCGAGCGGAAGG TTTTTCTGCAGCTCG Rpal_1938 2091719 - 2090235 - | ABC transporter related Rpal_1939 2092642 - 2091719 - | inner-membrane translocator TERM 1516 2091909 - 2091862 - G 73 -14 -3.18023 | gap 1, overlap 2091860 CGACGATCAGGAACA CCGCGCCCAGCGCCGCGCCGATC ACG GTTCGCCGCC-CGCCGAGCACGG CTGCCACGATCACGT Rpal_1940 2093519 - 2092644 - | inner-membrane translocator TERM 1517 2093544 - 2093599 + r 82 -14.6 -3.36492 | gap 1, opp_overlap 2093542 2093543 TCAGTTGGCCAAATC CGGGACGTCATTCCGGG-ATGCGCGCC GCC GGCGCGCAGACCCGGAATCCCGAGCTG TTCTGAGATTCCGGG TERM 1518 2093702 - 2093677 - R 100 -11.2 -4.72986 | gap 1, opp_overlap 2093677 CAGCCGGACGAAAAA TGCTCCCGTCC TTGGC GG-CGGGAGCA TTCGCTGAAGCGGTC TERM 1519 2093677 - 2093702 + r 71 -12.6 -3.05596 | opp_overlap 2093677 CAGCCGGACGAAAAA TGCTCCCGTC CTTGGC GGCGGGAGCA TTCGCTGAAGCGGTC Rpal_1941 2094966 - 2093716 - | Extracellular ligand-binding receptor TERM 1520 2095156 - 2095140 - H 77 -13.7 -3.25823 | TTTGGGCCAGATGAA GTCGCGC CAT GCGCGAC ACAAAGGGGAACCGA Rpal_1942 2095173 - 2096252 + | tartrate dehydrogenase Rpal_1943 2097125 - 2096286 - | hypothetical protein Rpal_1944 2098180 - 2097266 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Rpal_1945 2099465 - 2098215 - | amidase, hydantoinase/carbamoylase family TERM 1521 2099181 - 2099229 + g 71 -12.5 -3.24747 | GATGCCGTCAAACTT GCCGCCGGTCGG-CTGGGTATCG AGATG CGA-GCCGAGGCCGATCGGTGGC TTGGTCATGTCGCGG Rpal_1946 2100485 - 2099535 - | transcriptional regulator, LysR family Rpal_1947 2100601 - 2101419 + | protein of unknown function DUF1445 TERM 1522 2101508 - 2101526 + G 83 -13.1 -3.76492 | opp_overlap 2101489 GTAACCTCGTTCTCG GCGGCGC GGCCA GCGCCGC TTTGCTGCCGTTCGC Rpal_1948 2101477 - 2102724 + | Extracellular ligand-binding receptor TERM 1523 2102740 - 2102761 + F 100 -17.3 -4.03234 | opp_overlap 2102740 CGCAGGAAGTTAAAA CGGGCGCAC CATG GTGCGCCCG TTTGTGTGAGGGGCG TERM 1524 2102761 - 2102740 - f 100 -17.3 -4.30014 | opp_overlap 2102740 CGCAGGAAGTTAAAA CGGGCGCAC CATG GTGCGCCCG TTTGTGTGAGGGGCG TERM 1525 2103039 - 2103077 + G 86 -18.1 -3.02144 | overlap 2103043 2103045 TCTTCGCGATCGATC CGATCCTCGCCGCTCCG CTCGT CGGGGCGGCGATGTTCG TGTTCGGCGCGGTGA TERM 1526 2103043 - 2103073 + G 85 -16.1 -3.36273 | overlap 2103039 2103045 CGCGATCGATCCGAT CCTCGCCGCTCCG CTCGT CGGGGCGGCGATG TTCGTGTTCGGCGCG TERM 1527 2103045 - 2103071 + G 86 -17.3 -3.25073 | overlap 2103043 2103039 CGATCGATCCGATCC TCGCCGCTCCG CTCGT CGGGGCGGCGA TGTTCGTGTTCGGCG Rpal_1949 2102852 - 2103730 + | inner-membrane translocator Rpal_1950 2103730 - 2104716 + | inner-membrane translocator Rpal_1951 2104713 - 2105447 + | ABC transporter related Rpal_1952 2105431 - 2106135 + | ABC transporter related TERM 1528 2106380 - 2106427 + G 75 -7 -4.35044 | gap 1, overlap 2106371 2106377 ACCGAGCACGCCTTT CTCGACCGCTTC-GATGCGGC GCGGGCG GCGGGATTTGATGCGGTCGAG TTTCTGTTTCCCTAC TERM 1529 2106646 - 2106685 + G 72 -12 -3.56568 | gap 1, opp_overlap 2106652, overlap 2106647 2106655 2106656 2106658 GCTACATCTGCTGGC AGGCAATGCCGACCGCCGC GAC GCGGCGG-CGGCGCTGGCG TTTCGGCGGTCCTTG TERM 1530 2106647 - 2106684 + G 75 -15.5 -2.73619 | gap 1, opp_overlap 2106652, overlap 2106646 2106655 2106656 2106658 CTACATCTGCTGGCA GGCAATGCCGACCGCCGC GAC GCGGCGG-CGGCGCTGGC GTTTCGGCGGTCCTT TERM 1531 2106679 - 2106652 - g 74 -14.8 -3.05384 | gap 1, opp_overlap 2106647 2106646 2106655 2106656 2106658 TCTGCTGGCAGGCAA TGCCGACCGCCGC GAC GCGGCGG-CGGCG CTGGCGTTTCGGCGG TERM 1532 2106655 - 2106697 + G 75 -14.1 -3.27298 | gap 1, opp_overlap 2106652, overlap 2106647 2106646 2106656 2106658 GCTGGCAGGCAATGC CGACCGCCGCGACGC-GGCG GCGG CGCTGGCGTTTCGGCGGTCC TTGGTGGTTGCCGCG TERM 1533 2106656 - 2106696 + G 85 -17.6 -2.56164 | gap 1, opp_overlap 2106652, overlap 2106647 2106646 2106655 2106658 CTGGCAGGCAATGCC GACCGCCGCGACGC-GGCG GCGG CGCTGGCGTTTCGGCGGTC CTTGGTGGTTGCCGC TERM 1534 2106658 - 2106694 + G 71 -14.4 -2.81815 | gap 1, opp_overlap 2106652, overlap 2106647 2106646 2106656 2106655 GGCAGGCAATGCCGA CCGCCGCGACGC-GGCG GCGG CGCTGGCGTTTCGGCGG TCCTTGGTGGTTGCC TERM 1535 2106776 - 2106760 - g 71 -9.3 -3.767 | opp_overlap 2106759 2106756 2106760 GATCGAGCCACTAAA CCGGCGC GAT GCGCCCG GCTATTTCCTCGACG Rpal_1953 2106329 - 2107108 + | Hydroxypyruvate isomerase TERM 1536 2110489 - 2110465 - g 72 -5.8 -4.30987 | gap 2, overlap 2110467 ATGGTTCACAAGAAA CA-GC-CGGCAT CCG ATGCCGCGCCTG CTCCGGAGATGTCGC Rpal_1954 2107321 - 2110515 + | acriflavin resistance protein Rpal_1955 2110505 - 2111707 + | efflux transporter, RND family, MFP subunit TERM 1537 2111773 - 2111820 + T 81 -15.7 -3.06183 | gap 1, opp_overlap 2111778 2111782, overlap 2111778 2111782 GGGGAGCCGAAGGCG ACGAAGCAATCCAGGAGCTCCG TGCAC CGCGGC-CCTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 1538 2111778 - 2111815 + T 73 -12.8 -3.19192 | gap 1, opp_overlap 2111778 2111782, overlap 2111773 2111782 GCCGAAGGCGACGAA GCAATCCAGGAGCTCCG TGCAC CGCGGC-CCTGGATTGC TTCGCTTCGCTCGCA Rpal_1956 2113389 - 2111875 - | acetyl-CoA acetyltransferase Rpal_1957 2114208 - 2113429 - | short-chain dehydrogenase/reductase SDR Rpal_1958 2114376 - 2115176 + | Enoyl-CoA hydratase/isomerase Rpal_1959 2115184 - 2116179 + | aminoglycoside phosphotransferase Rpal_1960 2116198 - 2116578 + | hypothetical protein Rpal_1961 2116946 - 2116605 - | hypothetical protein Rpal_1962 2117847 - 2117068 - | Enoyl-CoA hydratase/isomerase TERM 1539 2117837 - 2117857 + g 89 -3.1 -5.26875 | overlap 2117842 GTGACGGTGGAGAAT TGCAGCGCC ATC GGCGTTTCC TTTTTTCGTTGAGCA TERM 1540 2117842 - 2117852 + g 81 -8.2 -4.46531 | overlap 2117837 GGTGGAGAATTGCAG CGCC ATC GGCG TTTCCTTTTTTCGTT TERM 1541 2118061 - 2118078 + G 73 -11.3 -3.69395 | opp_overlap 2118048 AAGCCGCTCGAGCAG GCGGATG ACAA CATCCGC TTCTTCGATCATCGC TERM 1542 2118408 - 2118381 - g 73 -10.6 -3.65812 | CTCGCCCGAACAGAA GGCGATGATCGA CGGT TCGATCACCGGC AAGTACCGCATCACG TERM 1543 2118496 - 2118473 - g 73 -10.9 -3.71873 | CCACGCACATGGAAA CGCGCGCCG AAGAAG CGGTGCGCG ACGGCAAGAAGGGCT TERM 1544 2118809 - 2118834 + G 79 -7.5 -4.52589 | gap 1, opp_overlap 2118795, overlap 2118795 2118812 ACCGCATCCGCCAAG CAGCGTCGTCGC TCG GCG-CGGCGGTG TTTTGTATCAACGAG Rpal_1963 2117974 - 2119248 + | acyl-CoA dehydrogenase domain protein TERM 1545 2119268 - 2119317 + T 80 -14.4 -3.17229 | gap 3, opp_overlap 2119244 2119254, overlap 2119242 2119267 AGACCGCTGCCTCTC GC-CGGTCATTCCGGG-GCACGCGC GAA GCGCGTGAACCCGGAATC-CCGAGC TGTTGATCGTCGGGT TERM 1546 2119340 - 2119383 + T 78 -10.2 -4.05788 | gap 1 CGTCGGGTGTGCCAC CTCGAGATTCC-GGGTTCGCG CTA CGCGTGCCCCGGAATGACGGG TTTGGTTTAGCGCGC Rpal_1964 2121199 - 2119622 - | AMP-dependent synthetase and ligase TERM 1547 2121454 - 2121479 + r 71 -11.2 -3.53343 | gap 1, overlap 2121456 GGCCTTACGGCCGGC CA-CCCTCCCC GCAAG GGGGAGGGATG TTTCGGCGAGCGCTT TERM 1548 2121456 - 2121476 + r 71 -14 -2.60496 | overlap 2121454 CCTTACGGCCGGCCA CCCTCCCC GCAAG GGGGAGGG ATGTTTCGGCGAGCG Rpal_1965 2122369 - 2121497 - | short-chain dehydrogenase/reductase SDR Rpal_1966 2122477 - 2123289 + | Enoyl-CoA hydratase/isomerase TERM 1549 2123358 - 2123311 - f 72 -13.4 -2.80821 | gap 1, opp_overlap 2123317 2123322, overlap 2123308 2123306 GCGGCAAATACATGA CTTAT-CGAGGGGACGCCGCGCG CAT CGCGCGGCGTCTTCGCTTATAAG CGTCGCATCAACGCG TERM 1550 2123317 - 2123351 + F 100 -21.4 -3.31263 | opp_overlap 2123311 2123308 2123306, overlap 2123322 AATACATGACTTATC GAGGGGACGCCGCGCG CAT CGCGCGGCGTCTTCGC TTATAAGCGTCGCAT TERM 1551 2123322 - 2123346 + F 100 -22.9 -3.23452 | opp_overlap 2123311 2123308 2123306, overlap 2123317 ATGACTTATCGAGGG GACGCCGCGCG CAT CGCGCGGCGTC TTCGCTTATAAGCGT Rpal_1967 2123438 - 2124982 + | AMP-dependent synthetase and ligase Rpal_1968 2127780 - 2124979 - | signal transduction histidine kinase, nitrogen specific, NtrB TERM 1552 2126546 - 2126564 + g 73 -13.8 -3.21395 | overlap 2126544 2126547 TCGAAGATCTCCTTC TCGCGGCG GAG CGCCGCGG TCTTCTCGCGCGACT TERM 1553 2126547 - 2126563 + g 71 -15.1 -2.52623 | overlap 2126546 2126544 CGAAGATCTCCTTCT CGCGGCG GAG CGCCGCG GTCTTCTCGCGCGAC Rpal_1969 2128831 - 2127941 - | transcriptional regulator, LysR family TERM 1554 2128706 - 2128744 + g 76 -14.5 -3.07994 | gap 1, opp_overlap 2128693, overlap 2128696 2128728 CAGCTTGACGCCGTG ACGCGCTTCCAGCGCGGC GATC GCCGCGCTGGTGGC-CGA TTGGGTGAGGTTCAG Rpal_1970 2129892 - 2128828 - | hypothetical protein TERM 1555 2130353 - 2130396 + G 79 -7.5 -4.52345 | gap 3 CATCGGCCTCGTTTG CGTGGTG-TCGCGCTG-GCGCG AGG CGCGCGCGGT-CGATCAGCACG TTTATTTGGTGGTGT Rpal_1971 2130171 - 2130953 + | hypothetical protein TERM 1556 2131048 - 2131018 - f 79 -8.2 -4.36914 | opp_overlap 2131017 2131020, overlap 2131020 GTGCGGTGCACAAAA TACTCCAGGATGCC GGT GGTGTCCTGGAGTG CTGTCATGTCGTCGC TERM 1557 2131046 - 2131020 - f 76 -10.8 -3.79419 | opp_overlap 2131017 2131020, overlap 2131018 GCGGTGCACAAAATA CTCCAGGATGCC GGT GGTGTCCTGGAG TGCTGTCATGTCGTC TERM 1558 2131020 - 2131046 + F 78 -15.2 -2.6891 | opp_overlap 2131020 2131018, overlap 2131017 GCGGTGCACAAAATA CTCCAGGATGCC GGT GGTGTCCTGGAG TGCTGTCATGTCGTC TERM 1559 2132116 - 2132100 - g 77 -13.7 -3.38046 | overlap 2132098 GCCGCATCGCAAATA CGAGCCG TAT CGGCTCG CGGTGTCCGGCATCT Rpal_1972 2131054 - 2133864 + | Phosphoenolpyruvate carboxylase Rpal_1973 2134002 - 2134331 + | small multidrug resistance protein TERM 1560 2134618 - 2134641 + F 71 -5.3 -4.42653 | GCCGTTATCCATCCG TCTGCGGCA TCATTT TGTTGCAGA TTTTATGCATCAAAT Rpal_1974 2134713 - 2135375 + | hypothetical protein Rpal_1975 2135399 - 2135809 + | hypothetical protein TERM 1561 2136890 - 2136863 - g 70 -11.2 -3.54459 | overlap 2136870 2136881 CGAAGCGGCCGCAAA GGAAGCAGCCGC CAAG GAGGCTGCTGCC AAGGCGGCCAAGGAC TERM 1562 2136991 - 2136972 - g 70 -10.6 -3.53761 | overlap 2136961 GAAGTCGCCGCGAAA GCCGCTGC TGAA GCCGCGGC CAAGGAAGCTGCTGC Rpal_1976 2136231 - 2137556 + | OmpA/MotB domain protein TERM 1563 2137574 - 2137622 + T 100 -19.8 -3.7282 | gap 1, opp_overlap 2137590, overlap 2137580 2137590 CCCCCTCCAAGGTGC TTCACCCGACGGAAAAGCCCGCC GCGA GGCGGGCTTTTCTGT-GCGTGGA TTCTTGGTCGAGTCA TERM 1564 2137580 - 2137618 + T 91 -20.5 -2.67428 | gap 1, opp_overlap 2137590, overlap 2137574 2137590 CCAAGGTGCTTCACC CG-ACGGAAAAGCCCGCC GCGA GGCGGGCTTTTCTGTGCG TGGATTCTTGGTCGA TERM 1565 2137607 - 2137590 - T 93 -14.1 -4.1899 | opp_overlap 2137590 2137580 2137574 TCACCCGACGGAAAA GCCCGCC GCGA GGCGGGC TTTTCTGTGCGTGGA TERM 1566 2137590 - 2137607 + T 100 -14.1 -4.55287 | opp_overlap 2137590, overlap 2137580 2137574 TCACCCGACGGAAAA GCCCGCC GCGA GGCGGGC TTTTCTGTGCGTGGA Rpal_1977 2138628 - 2137714 - | short-chain dehydrogenase/reductase SDR TERM 1567 2138623 - 2138637 + g 95 -4.2 -5.52807 | GCCGTCCAGTGCCTT GGCCAT GTG ATGTCC TTTTTGTTTGTTGTT TERM 1568 2138718 - 2138770 + r 100 -14.8 -4.20148 | gap 1, opp_overlap 2138696, overlap 2138719 CTCGCGGTGTTCTGC TGAGCGAGACTCCGGGTTCGCGAGC TGGC GCTCGCGC-CCCGGAATGACGCTCG TTGTTTTGCCGTCAT TERM 1569 2138719 - 2138769 + r 86 -16.1 -3.11366 | gap 1, opp_overlap 2138696, overlap 2138718 TCGCGGTGTTCTGCT GAGCGAGACTCCGGGTTCGCGAGC TGGC GCTCGCGC-CCCGGAATGACGCTC GTTGTTTTGCCGTCA Rpal_1978 2140055 - 2138916 - | hypothetical protein TERM 1570 2138992 - 2139037 + g 83 -14.7 -3.72695 | gap 1 CAGACCGAGATCTTC GCGTTCGGCACCTGTGCGGGCG CGA TGCC-GCGCATCTGCCGGACGC TTTCCTGCAACGCGT Rpal_1979 2140474 - 2140061 - | protein of unknown function DUF35 TERM 1571 2141252 - 2141199 - g 70 -10.8 -3.57462 | gap 1 TACGGCACGCCGAAA GCCGCCTATCGCCGAGACG-TCGGC TACGT GCCGGGCGGCTCGTCGTCAGGCGCC GCGGTCTCGGTCGCC TERM 1572 2141368 - 2141394 + G 85 -10.1 -4.21922 | gap 1, opp_overlap 2141366 2141354, overlap 2141367 AGCCGTCGCAATATC GC-GTGCCGCGC GACG GCGCGGTGCCGC TTTCGTTTTCGCTCG Rpal_1980 2140770 - 2142119 + | Amidase TERM 1573 2142249 - 2142282 + G 70 -13.2 -3.03124 | gap 1, opp_overlap 2142233 2142251, overlap 2142251 CGCTGAACTCGAAGC GATCGGCATCG-CGC GGCCG GCGTCGACGCCGATC TATTACCGCGTCGCC Rpal_1981 2142112 - 2142798 + | hypothetical protein TERM 1574 2142826 - 2142875 + T 100 -25.9 -3.28924 | gap 1, overlap 2142827 CGCGCCATCACCACC GCTCGTCATTCCGGG-GCACGCGC GAA GCGCGTGAACCCGGAATGACGAGG TTGTGACGCAAGCTG TERM 1575 2142827 - 2142874 + T 100 -29.4 -2.57211 | gap 1, overlap 2142826 GCGCCATCACCACCG CTCGTCATTCCGGG-GCACGCGC GAA GCGCGTGAACCCGGAATGACGAG GTTGTGACGCAAGCT Rpal_1982 2143422 - 2142973 - | thioesterase superfamily protein Rpal_1983 2144933 - 2143761 - | 4-hydroxybenzoate 3-monooxygenase Rpal_1984 2145102 - 2146112 + | TRAP dicarboxylate transporter- DctP subunit TERM 1576 2146128 - 2146161 + F 87 -17.5 -2.87211 | gap 1, overlap 2146155 GCTTCTCCGCGGTCA TTCCGGG-ATGCGCGC ATC GCGCGCAGACCCGGAA TCTCTGACCCAAGAT TERM 1577 2146155 - 2146188 + F 78 -14.7 -3.07816 | gap 1, opp_overlap 2146176, overlap 2146128 2146177 CGCATCGCGCGCAGA CCCGGAATCTCTGACC CAA GATC-GAGATTCCGGG TTCGCTCGCTGCGCG TERM 1578 2146351 - 2146375 + G 75 -11.4 -3.72324 | CATGGACCGCTTCAT CGACGCGATC GAATG GATCGCGGCG TTCTTCGTCGGCATC Rpal_1985 2146259 - 2146831 + | Tripartite ATP-independent periplasmic transporter DctQ component TERM 1579 2147602 - 2147582 - g 72 -13.9 -3.06183 | opp_overlap 2147585 2147586 TTCATTCCGACCGAA GCCGGCGCC GTC GGCGCCGTC GGCGCGTTCCTGATC Rpal_1986 2146838 - 2148145 + | TRAP dicarboxylate transporter, DctM subunit Rpal_1987 2148312 - 2148773 + | hypothetical protein TERM 1580 2149836 - 2149825 - g 75 -7.2 -4.30416 | opp_overlap 2149824 2149825 ACCAGGAAGCCAAAA CGCG GATA CGCG CTTTTCTCGATCACA Rpal_1988 2149071 - 2149877 + | Enoyl-CoA hydratase/isomerase Rpal_1989 2149889 - 2151784 + | AMP-dependent synthetase and ligase Rpal_1990 2152023 - 2152442 + | thioesterase superfamily protein Rpal_1991 2152522 - 2153679 + | Extracellular ligand-binding receptor TERM 1581 2153719 - 2153741 + TF 100 -16.3 -4.72272 | CCTGCGCCTTGCGAA GCCGGCCTC CCCGT GAGGCCGGC TTTTTGCTGAGCGCA Rpal_1993 2155506 - 2154787 - | ABC transporter related Rpal_1992 2153995 - 2154849 + | diguanylate cyclase Rpal_1994 2157275 - 2155503 - | ABC transporter related TERM 1582 2155690 - 2155704 + g 91 -11.4 -4.2349 | overlap 2155676 AGCTGCCGCAGCAGC GCAGCG AGC CGCTGC TTTTCCATGTGGCGC Rpal_1995 2158321 - 2157281 - | inner-membrane translocator TERM 1583 2158546 - 2158502 - g 89 -10.6 -4.1899 | gap 2, overlap 2158503 TGACCGCATCGAAAA CCGCCGCCGT-CGCCAAGC-CG ACG CGAGCCGGGCGCAAGGCGCCGG CGGTCGAGACAGCCC TERM 1584 2158595 - 2158634 + G 74 -15 -3.07192 | gap 1 AGATGGGCGAGCTGT CGGAGCTGCTCG-GCTACG CGC TGAAGCGCGCGCAGCTCCG TGTGTTCGAAGACTT TERM 1585 2158896 - 2158873 - g 71 -14.6 -2.61383 | gap 1, overlap 2158872 ATGCTCACCGACAAG GGC-CGCGCCA CAC TGGCGCGCGCC AAGAAGCTGGTGGCG Rpal_1996 2158486 - 2159004 + | transcriptional regulator, MarR family Rpal_1997 2160871 - 2159141 - | sodium/hydrogen exchanger Rpal_1998 2160920 - 2161504 + | hypothetical protein Rpal_1999 2161624 - 2163198 + | adenylate/guanylate cyclase TERM 1586 2163373 - 2163335 - T 70 -10.3 -3.63991 | gap 2, opp_overlap 2163325 CATGACGGGGAATAA GGCCCCGTCGTTACGAGCG AAG CGC-CGCAATG-CAGGGCC CTGTGCACTGTGGCT Rpal_2000 2164720 - 2163440 - | Hydroxypyruvate reductase TERM 1587 2163486 - 2163507 + g 78 -10.1 -4.07568 | overlap 2163499 TTGGTCAGTGTCGGG CCGGTGATC AGCA GGTCGCCGG TTTTGGCGAAGAAGC TERM 1588 2163827 - 2163884 + g 71 -13.9 -2.83403 | gap 1, opp_overlap 2163784, overlap 2163827 CTCGCGCGCAAGCTG CG-CGTGCGCGGCGGCGACCTCGCGGGC CTC GCCTTCGAGATCGGCGCCGAGATCGGCG ATTTCGTAGCCGGCC TERM 1589 2164863 - 2164893 + r 73 -13.2 -3.14132 | opp_overlap 2164866, overlap 2164866 GGCATCCTGAACGAA AAAGCCCTCCGCGG TGA TCGCGGAGGGCTCG TTCGTCCAGACGAAC TERM 1590 2164890 - 2164866 - R 100 -18.6 -4.86621 | opp_overlap 2164863 2164866 ATCCTGAACGAAAAA GCCCTCCGCG GTGAT CGCGGAGGGC TCGTTCGTCCAGACG TERM 1591 2164866 - 2164890 + r 87 -19.3 -2.77899 | opp_overlap 2164866, overlap 2164863 ATCCTGAACGAAAAA GCCCTCCGCGG TGA TCGCGGAGGGC TCGTTCGTCCAGACG TERM 1592 2164952 - 2164911 - R 72 -13.7 -2.81547 | gap 1, opp_overlap 2164914, overlap 2164908 2164913 CGTCCAGACGAACGA GAGGGCGAACTAGCCGCCGC TCG GCG-CGGCGACTTCGCCTTC GATCACGTCGCCGAA TERM 1593 2164914 - 2164949 + r 75 -14 -3.06796 | gap 1, opp_overlap 2164913 2164911 2164908 CCAGACGAACGAGAG GGCGAACTAGCCGCCGC TCG GCG-CGGCGACTTCGCC TTCGATCACGTCGCC Rpal_2001 2166155 - 2164920 - | Extracellular ligand-binding receptor TERM 1594 2166326 - 2166310 - R 77 -13.7 -3.30106 | overlap 2166308 2166306 TCGAATGGAAATAGA TCCGCGC GCT GCGCGGA AATGTCGCGCGGATG Rpal_2002 2167885 - 2166398 - | phage SPO1 DNA polymerase-related protein TERM 1595 2166542 - 2166567 + g 82 -6 -4.71426 | overlap 2166543 2166544 CACTTGCGGACCGTC GTCGCGGTCG ATCAGG CGGCCGCGGG TTTTGTTGATGGGGG Rpal_2003 2169232 - 2167982 - | Radical SAM domain protein TERM 1596 2169414 - 2169389 - H 75 -3.9 -4.74504 | gap 1, overlap 2169392 ACGGCAACGGAAAAA GGAGCGGCGC ATGGACA GCGCC-CGCC ACGGCATGCTTGCGC Rpal_2004 2169399 - 2170184 + | hypothetical protein TERM 1597 2170211 - 2170243 + F 74 -14.2 -2.53876 | gap 1 CGCCGCCACGTGTCG TCGCCGCCAAGCGCG ACAA CGCGC-TGGTGGTGA TCGCTTGCGATGCGC TERM 1598 2171331 - 2171377 + G 89 -15.1 -4.07568 | gap 2 AGATGTCGGCGATGC GCCGTGGCCGGCGCGCGCCGACG AGC CGCCGCTGCG-GCC-GCTACGGC TTTTGCAACAGCCCG Rpal_2005 2170237 - 2171673 + | hypothetical protein TERM 1599 2171780 - 2171730 - f 73 -12.7 -3.20723 | gap 1, opp_overlap 2171734 2171739 2171743, overlap 2171739 2171743 TTGCGAGGAAGCGAA GCCGA-CGAAGCAATCCAGTCCCG CGTA CTGAACTGGATTGCTTCGCTTCGC TCGCAATGACGAATC TERM 1600 2171734 - 2171775 + F 78 -14.5 -3.06183 | opp_overlap 2171730 2171739 2171743, overlap 2171739 2171743 GAGGAAGCGAAGCCG ACGAAGCAATCCAGTCCCG CGTA CTGAACTGGATTGCTTCGC TTCGCTCGCAATGAC TERM 1601 2171739 - 2171770 + F 70 -11.6 -3.19192 | opp_overlap 2171739 2171730 2171743, overlap 2171734 2171743 AGCGAAGCCGACGAA GCAATCCAGTCCCG CGTA CTGAACTGGATTGC TTCGCTTCGCTCGCA TERM 1602 2171770 - 2171739 - f 76 -13.8 -3.1886 | opp_overlap 2171734 2171739 2171743, overlap 2171730 2171743 AGCGAAGCCGACGAA GCAATCCAGTCCCG CGTA CTGAACTGGATTGC TTCGCTTCGCTCGCA TERM 1603 2173111 - 2173133 + G 71 -3.4 -4.63486 | overlap 2173112 GCTCGGCATCACCTG CGTCGATC CGACCGA GATCGACC TTTTGTTCGAGCGCT Rpal_2006 2171825 - 2175412 + | DNA polymerase III, alpha subunit TERM 1604 2175438 - 2175414 - T 78 -12.1 -3.73775 | GGGATTTCCACTAAA GCGATCACGCC GCC AGCGTGCTCGC CTGGTCGCGGAACGA Rpal_2007 2176371 - 2175418 - | NAD-dependent epimerase/dehydratase Rpal_2008 2176448 - 2177398 + | transcriptional regulator, LysR family TERM 1605 2178032 - 2178015 - g 79 -8.4 -4.39386 | overlap 2178006 TCGAAATCACCAAAA TCGGCG AGGGGG CGCCGA AGCCGTGGCCGGAAG Rpal_2009 2177447 - 2178844 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 1606 2178955 - 2178970 + F 73 -3.2 -4.7416 | overlap 2178957 GCGCTGGTGTCATCA TTCGCT GCTA AGCGCA TTTTTGCCGTTTTCA TERM 1607 2180258 - 2180303 + G 73 -14.7 -2.85351 | gap 1, opp_overlap 2180255 2180254, overlap 2180236 2180264 CCGGGCGAAAAGGTC ATCACCCGG-GGCAGCCTGTTC ATT GATCGGGCTGCCACCGGGTAAC TCTGGTCTCCACACG Rpal_2010 2179064 - 2180302 + | efflux transporter, RND family, MFP subunit Rpal_2011 2180459 - 2183581 + | heavy metal efflux pump, CzcA family Rpal_2012 2183781 - 2184098 + | hypothetical protein Rpal_2013 2185613 - 2184195 - | type I secretion outer membrane protein, TolC family Rpal_2014 2186591 - 2185812 - | Enoyl-CoA hydratase/isomerase Rpal_2015 2187412 - 2186675 - | hypothetical protein TERM 1608 2187239 - 2187257 + g 79 -3.1 -5.06414 | gap 1, overlap 2187239 GGCCTTGGCCGGCTT GG-CGTGG TGCT TCACGGCC TTTTTCTTCGGCGCC TERM 1609 2187458 - 2187448 - H 71 -8.2 -3.96148 | GCCCGCGACCAGAAA CCGC GGG GCGG TGGCGTCAGCGGGGC Rpal_2016 2187667 - 2188212 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 1610 2188271 - 2188239 - g 70 -13.3 -3.05596 | overlap 2188223 2188222 GATCGCCTGATCCAA GCGCTCGCCGCCGAC GGC GCCAGCCGCGACCGC CCAGTTGGGCAGGTG TERM 1611 2188685 - 2188734 + G 95 -19.9 -2.87463 | gap 1, overlap 2188700 GCCGTCGCGTCCGGC GCTCGCCGGCGCGCTC-GCCGGCA TGC TGTCGGCCGGGCTCGCCGGCACGC TGTATGCCGCGCATT Rpal_2017 2188215 - 2188853 + | protein of unknown function DUF1109 Rpal_2018 2188970 - 2189314 + | hypothetical protein Rpal_2019 2189375 - 2191603 + | TonB-dependent receptor TERM 1612 2191641 - 2191614 - T 71 -14 -2.53263 | opp_overlap 2191612 2191608 GGTAGGTGGAACGCA GTCGCCGGCCGC TCAG GCGGCCGGCGGT GCGGCGACGGTGGAT Rpal_2020 2192735 - 2191626 - | hypothetical protein Rpal_2021 2193918 - 2192773 - | diguanylate cyclase Rpal_2022 2194307 - 2194876 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 1613 2195131 - 2195180 + G 75 -7.1 -4.42464 | gap 3, overlap 2195136 2195137 2195137 2195177 GCGATCGACGCCGAG CCGGT-A--CGGGCGCCGGGCGCC GGGCA GGGGCTCGGCGCGCGCTTTGCCGG TTTCTTTGCCGGGTT TERM 1614 2195136 - 2195172 + G 77 -12.8 -3.671 | overlap 2195131 2195137 2195137 CGACGCCGAGCCGGT ACGGGCGCCGGGCGCC GGGCA GGGGCTCGGCGCGCGC TTTGCCGGTTTCTTT TERM 1615 2195137 - 2195171 + G 77 -16.3 -2.79175 | overlap 2195136 2195131 2195137 GACGCCGAGCCGGTA CGGGCGCCGGGCGCC GGGCA GGGGCTCGGCGCGCG CTTTGCCGGTTTCTT Rpal_2023 2194873 - 2195706 + | hypothetical protein TERM 1616 2195848 - 2195837 - f 87 -5.8 -5.24129 | GCGCGCGAGAAAAAA TCCG CAAC CGGA TTGAACGTCTGGGCG TERM 1617 2195960 - 2195989 + F 100 -17.9 -4.20136 | GCTGATATGGCTTTT GACCCGCCCGG TTGTCCCC CCGGGCGGGTC TTTCGTTTTCCGGCT TERM 1618 2196050 - 2196106 + F 78 -3.6 -5.06414 | gap 1, overlap 2196051 CCAATTCACCGCAGT ATTACGAGGTTCGGTCGCAGCGGCGCC CCGA GTTACCGCTGCG-CTGGACATGGTAAA TTTTTGTTAACAACA TERM 1619 2196448 - 2196461 + G 73 -5.9 -4.4078 | opp_overlap 2196446, overlap 2196446 ACAACAAGAAAGTCC CGCCG CGGC TGGCG TTTTACTTCGACGGC Rpal_2024 2196192 - 2196710 + | hypothetical protein TERM 1620 2197170 - 2197195 + G 76 -6 -4.56133 | overlap 2197172 GTGCTCAATCGTCGC CTGTCCCGCA CAGTTC TGCGGGCCTG TTTTCGTTCTTCACC Rpal_2025 2197148 - 2199214 + | methyl-accepting chemotaxis sensory transducer TERM 1621 2199245 - 2199278 + F 73 -13 -3.15249 | opp_overlap 2199236 2199247, overlap 2199235 2199233 AAATAACTTGCAACT AACGTGCGCCCGGG CCTTGT CCCGGGCGCGCGCG TTGATGCGACCTGTG TERM 1622 2199276 - 2199247 - f 93 -17.8 -3.36135 | opp_overlap 2199245 2199235 2199233, overlap 2199236 ATAACTTGCAACTAA CGTGCGCCCGGG CCTTGT CCCGGGCGCGCG CGTTGATGCGACCTG Rpal_2026 2199525 - 2199866 + | hypothetical protein Rpal_2027 2200020 - 2202329 + | TonB-dependent receptor Rpal_2028 2202497 - 2202940 + | hypothetical protein Rpal_2029 2203271 - 2203032 - | type IV pilus assembly PilZ TERM 1623 2203240 - 2203252 + g 83 -4.7 -5.01497 | overlap 2203237 GCAGCCTTCAGGACG CGCCG ACG CGGAG TTTTTCTCTGCTCAT Rpal_2030 2204762 - 2203404 - | hypothetical protein Rpal_2031 2205128 - 2204868 - | hypothetical protein Rpal_2032 2205845 - 2205195 - | peptidase C15 pyroglutamyl peptidase I Rpal_2033 2206831 - 2205842 - | LAO/AO transport system ATPase TERM 1624 2206868 - 2206904 + r 70 -12.4 -3.14527 | gap 2, overlap 2206866 GGCGCCAGGAGCGAG GGGAG-TCCG-GCGCG GAATGAG CGCGCGCGGATCTCCC TGTTGATGACGCTTC Rpal_2034 2207247 - 2206918 - | carbonic anhydrase Rpal_2035 2207510 - 2207238 - | carbonic anhydrase Rpal_2036 2208494 - 2207709 - | hypothetical protein TERM 1625 2208084 - 2208063 - G 72 -4.3 -4.57073 | opp_overlap 2208082, overlap 2208065 CAGGTCGGTGAAAAA CGGGCGGAT GCTG ATGCGCCTG CTGAGCTGCTTGTCC TERM 1626 2208576 - 2208593 + r 76 -8.3 -4.16943 | overlap 2208575 2208586 AGGAAGGATTTCAAC GCCGCGC TGGC GCGCCGC TTTTCGCATCTGGCC Rpal_2037 2208965 - 2208555 - | PilT protein domain protein Rpal_2038 2209219 - 2208962 - | prevent-host-death family protein TERM 1627 2209246 - 2209229 - R 73 -8.5 -4.0641 | opp_overlap 2209229 2209225 CTTCATGCAGACAAA CTAGTCT GGTT AGACTAG TTCGTCAATTAAGCC Rpal_2039 2211442 - 2209283 - | methylmalonyl-CoA mutase, large subunit Rpal_2040 2211969 - 2211505 - | glutathione-dependent formaldehyde-activating GFA Rpal_2041 2213837 - 2211966 - | Methylmalonyl-CoA mutase TERM 1628 2212624 - 2212648 + g 80 -17.1 -2.79183 | CCGGCCTGCAGCGCG GCGAGCGCGCC GCC GGCGCGCTCGA TCTCCTGGAACTGGG Rpal_2042 2214486 - 2213995 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Rpal_2043 2214853 - 2214488 - | dihydroneopterin aldolase Rpal_2044 2215707 - 2214850 - | dihydropteroate synthase Rpal_2045 2216180 - 2215773 - | hypothetical protein Rpal_2046 2216566 - 2216198 - | hypothetical protein Rpal_2047 2216903 - 2218513 + | protein of unknown function DUF853 NPT hydrolase putative TERM 1629 2218532 - 2218553 + F 74 -14.5 -2.62616 | overlap 2218524 2218522 2218522 GGCCATGCGCGGCGA CGACGCGTA TTGA TACGCGTCG TCCTCTAACGCATGG Rpal_2048 2218811 - 2220217 + | peptidase M20 TERM 1630 2220262 - 2220295 + F 78 -15.4 -2.72463 | opp_overlap 2220289 ATTGCGCGAGGCCTG CTCCGGATTTGCGC CACTGC GCGCAAATCCGGAA TCCTTCCAAATCGGT Rpal_2049 2220561 - 2222855 + | TonB-dependent siderophore receptor Rpal_2050 2222969 - 2223703 + | hypothetical protein Rpal_2051 2223700 - 2223981 + | hypothetical protein Rpal_2052 2223995 - 2225617 + | PepSY-associated TM helix domain protein Rpal_2053 2225614 - 2225901 + | hypothetical protein Rpal_2054 2227938 - 2225941 - | methyl-accepting chemotaxis sensory transducer TERM 1631 2227473 - 2227500 + g 77 -12.8 -3.64703 | gap 1 GTTTGCCCTGCAATC CGTCGTGATCGGT GAG GCCGATCACG-CG TTTGGCTGACAGCAG TERM 1632 2228231 - 2228210 - R 100 -14.4 -4.65895 | opp_overlap 2228210 GTGCCCACGCAAAAA CGCCGCCC GGAATT GGGCGGCG TTTGAATTCCAATAG TERM 1633 2228210 - 2228231 + r 90 -15.1 -3.76125 | opp_overlap 2228210 GTGCCCACGCAAAAA CGCCGCCCG GAAT TGGGCGGCG TTTGAATTCCAATAG Rpal_2055 2229177 - 2228395 - | class II aldolase/adducin family protein TERM 1634 2229861 - 2229821 - g 86 -17.6 -3.21099 | CCCTGGCAGGACGAA GCCGCAG-CGCGCGACCGGC TGC GCCAG-CGCGCGGCTGCGCC GCTCGAGATCAAGCC Rpal_2056 2229443 - 2230321 + | hypothetical protein TERM 1635 2230455 - 2230481 + F 93 -17.3 -3.53012 | gap 1, opp_overlap 2230446 2230455 GGACAATTTGACGAA CGCGCC-CGCGG CCTG CCGCGCGGCGCG TTTCGAACCGACGAC TERM 1636 2230481 - 2230455 - f 89 -17.3 -3.19653 | gap 1, opp_overlap 2230455, overlap 2230446 GGACAATTTGACGAA CGCGCC-CGCGG CCTG CCGCGCGGCGCG TTTCGAACCGACGAC Rpal_2057 2230509 - 2230925 + | transcriptional regulator, MucR family Rpal_2058 2231673 - 2230933 - | short-chain dehydrogenase/reductase SDR Rpal_2059 2231751 - 2232386 + | transcriptional regulator, TetR family Rpal_2060 2232508 - 2233119 + | ATPase involved in DNA replication initiation Rpal_2061 2233577 - 2233149 - | Fe-S metabolism associated SufE Rpal_2062 2234115 - 2233693 - | hypothetical protein TERM 1637 2233797 - 2233855 + g 100 -19.8 -3.38272 | overlap 2233847 TCAGCGTGTCGCGCG GCGCGAGCGA-CGGATCGG-GCGCATCGGC GGC GCCGAT-CGCACCGGTCGGCTCGC-CGCGC TTCTCGGTGATGATC TERM 1638 2234577 - 2234614 + G 73 -13.3 -3.33815 | overlap 2234554 TGCTGCATCCGTCGG CGCGCTATGACGCGCTG ACGA CTGCGCGGCATCGTGCG TTCCTTGCGCCGCGT TERM 1639 2234644 - 2234659 + G 79 -11.8 -3.84394 | overlap 2234621 TCTGCTTGGAAGCCT CGCCGC TTTC GCGGCG TTTCCATTGTATCTG TERM 1640 2235263 - 2235226 - g 73 -13.3 -3.32844 | opp_overlap 2235244 CCCGGCAGCCGAGAA CCTGCTCGGAACGCCGG TGGC CCGGCTCGCCGAGCACG GCCTGTTCGATCGAG Rpal_2063 2234522 - 2236354 + | multi-sensor signal transduction histidine kinase TERM 1641 2236394 - 2236367 - f 70 -12.6 -2.94299 | overlap 2236364 TAAGACGCGAAAGGA CGATGCACCGCG GCGT CGCGGTGCGGCG GCAGCCGTTGCGGAG Rpal_2064 2236431 - 2237132 + | Peptidoglycan-binding domain 1 protein Rpal_2065 2237285 - 2237626 + | protein of unknown function DUF1491 TERM 1642 2237695 - 2237722 + T 79 -8.5 -4.25283 | gap 2 CCGTGCGATGCGATC CCGTGGCGTCATC CGTC GA-GACGCC-CGG TTTTGCTGGGCGCGT Rpal_2066 2238775 - 2237801 - | hypothetical protein TERM 1643 2238874 - 2238892 + r 70 -13.1 -2.88663 | opp_overlap 2238874 CCAGAGACGCAAGAA CGGGCGC TTGGC GCGCCCG TCTGTCGAAGTCACT TERM 1644 2238892 - 2238874 - R 81 -13.1 -3.72231 | opp_overlap 2238874 CCAGAGACGCAAGAA CGGGCGC TTGGC GCGCCCG TCTGTCGAAGTCACT Rpal_2067 2239997 - 2238927 - | polysaccharide deacetylase Rpal_2068 2240607 - 2240077 - | hypothetical protein Rpal_2069 2240787 - 2240987 + | hypothetical protein Rpal_2070 2241005 - 2241787 + | putative exported protein of unknown function Rpal_2071 2242360 - 2241794 - | conserved hypothetical protein; putative signal peptide Rpal_2072 2242935 - 2242357 - | protein of unknown function DUF1214 Rpal_2073 2245255 - 2242979 - | penicillin-binding protein, 1A family TERM 1645 2243149 - 2243184 + g 70 -13.3 -3.03151 | overlap 2243173 CCCGTACCAGGATCT CGGCGCCG-CGCCGCGT CAGC AC-CGGCGGCGGGGCCG CTTTCATTTCGGCGC TERM 1646 2243173 - 2243185 + g 78 -10.5 -4.06055 | overlap 2243149 GCCGCGTCAGCACCG GCGGC GGG GCCGC TTTCATTTCGGCGCT TERM 1647 2243198 - 2243240 + g 73 -13.3 -3.30124 | gap 1, overlap 2243218 CGCTTTCATTTCGGC GCTCTCGGCGCCCGCCGCGC GTTC GCCCGGCGT-CGCCGGCAGC TTCTCGCCCATGCCG TERM 1648 2245546 - 2245562 + G 72 -5.1 -4.30719 | opp_overlap 2245545 2245546, overlap 2245542 GCGCGCCCCAAGAAG CCGTC CCCCCAA GACGG TTTCTTCTGGAAGAC Rpal_2074 2245525 - 2246037 + | protein of unknown function UPF0153 TERM 1649 2246490 - 2246457 - g 70 -10.9 -3.53091 | gap 1, opp_overlap 2246487 AGCTTCGGCCGTAAA CCGAGTGCGCAGGCGC GGC ACGTCGGCGCAC-CGG TGCTGATCGGGATTC Rpal_2075 2246091 - 2246834 + | protein of unknown function DUF81 Rpal_2076 2247645 - 2247130 - | transcriptional regulator, MarR family Rpal_2077 2247725 - 2248963 + | cytochrome P450 Rpal_2078 2248973 - 2249293 + | ferredoxin TERM 1650 2249633 - 2249605 - g 74 -10.1 -3.85864 | CGATCACCAGAACAA GGCCGACGTCGGC AAC GCCATCGCCCGCC GCTGGCTCGACAACG Rpal_2079 2249369 - 2250583 + | branched chain amino acid transport system substrate binding protein Rpal_2080 2251079 - 2250873 - | hypothetical protein Rpal_2081 2252221 - 2251076 - | PepSY-associated TM helix domain protein TERM 1651 2251105 - 2251135 + g 70 -8.8 -3.90744 | CGTCGGATGGCGCCG CGGTGCGGCTGCGG ACG CTGCCGCCGAAGCG TTGTTTGGCGACCCA Rpal_2082 2254533 - 2252218 - | TonB-dependent siderophore receptor TERM 1652 2256184 - 2256214 + r 100 -16.1 -4.62622 | gap 1, overlap 2256185 TTCCTCCCTAGACTT G-GGCCCGGGCGCC GAAT GGCGACCGGGCCTC TTTATTTGTCCTTCA TERM 1653 2256185 - 2256212 + r 100 -19.8 -3.91213 | overlap 2256184 TCCTCCCTAGACTTG GGCCCGGGCGCC GAAT GGCGACCGGGCC TCTTTATTTGTCCTT TERM 1654 2256340 - 2256309 - R 72 -7.2 -4.11692 | gap 1 GAGGCAGCGGCAAAA CTCCGGCAGTG-CGC GAT GCGTCACTGCCCAGG CCGCATTGTCGACCG Rpal_2084 2257460 - 2256285 - | 6-aminohexanoate-dimer hydrolase Rpal_2085 2258643 - 2257576 - | Choloylglycine hydrolase TERM 1655 2260047 - 2260061 + G 71 -3.4 -4.60487 | overlap 2260043 GCGCTGTTGACGCCG CTGCCG CTG TGGCTG TTTTTGACCCTGCTA TERM 1656 2260166 - 2260136 - g 73 -12.6 -3.35679 | GGTGTCGATCCAGAA CGCGGTGCCG CGGCCGCAGAT CGGCACCGCG ACCGGCGCGATGAAC Rpal_2086 2258799 - 2260442 + | major facilitator superfamily MFS_1 TERM 1657 2261558 - 2261519 - g 82 -15.6 -3.39327 | gap 1, opp_overlap 2261522, overlap 2261497 2261502 2261522 GCCGGACACCGAGAA GGACGCGGCGCTGCCGGCG CAT CGC-GGCGCCGCCGCGTTC ATCGACGGCACCGAC TERM 1658 2261522 - 2261555 + G 86 -18.1 -3.14132 | gap 1, opp_overlap 2261497 2261502 2261519 2261522 GGACACCGAGAAGGA CGCGGCGCTGCCGGCG CAT CGC-GGCGCCGCCGCG TTCATCGACGGCACC TERM 1659 2261555 - 2261522 - g 76 -15.9 -2.85712 | gap 1, opp_overlap 2261522, overlap 2261497 2261502 2261519 GGACACCGAGAAGGA CGCGGCGCTGCCGGCG CAT CGC-GGCGCCGCCGCG TTCATCGACGGCACC Rpal_2087 2260566 - 2261966 + | hypothetical protein Rpal_2088 2262078 - 2262242 + | Flp/Fap pilin component TERM 1660 2262277 - 2262298 + F 72 -7.3 -4.1721 | gap 1 TTGGTCGGCGGGAAG TTGGG-GGCC GCC GGCCGTCCAA TTTTCGAGTGTCGGT Rpal_2089 2262535 - 2264088 + | hypothetical protein Rpal_2090 2264366 - 2264512 + | hypothetical protein TERM 1661 2266138 - 2266161 + G 73 -6.6 -4.39287 | gap 1, overlap 2266139 2266144 2266146 GACGATCGAGTCGGC GCGCG-CCGGC GAG GCTGGTCGCGG TTTTGCTGTGGTTGC Rpal_2091 2264750 - 2266429 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 1662 2266450 - 2266497 + F 100 -16.2 -4.57569 | gap 1, overlap 2266452 CGTCTGAGCTTTTGG AGCGGAGGCCCTGCGCCGCGCGG ACA TCGCGCGAC-CGGGGCCTTCGTG TTTTTGGCCGCGTCG TERM 1663 2266452 - 2266495 + F 100 -21 -3.90316 | gap 1, overlap 2266450 TCTGAGCTTTTGGAG CGGAGGCCCTGCGCCGCGCGG ACA TCGCGCGAC-CGGGGCCTTCG TGTTTTTGGCCGCGT TERM 1664 2267715 - 2267693 - g 88 -10.5 -4.41895 | AACCCTGAACGAAAA GCGCGAAGC GGTCG GCTACGCGC CGATCGAAGGCGGGG Rpal_2092 2266569 - 2267744 + | phage portal protein, HK97 family Rpal_2093 2267770 - 2267970 + | hypothetical protein Rpal_2094 2267975 - 2268151 + | hypothetical protein Rpal_2095 2268276 - 2269022 + | phage prohead protease, HK97 family Rpal_2096 2269153 - 2270409 + | phage major capsid protein, HK97 family Rpal_2097 2270689 - 2271582 + | hypothetical protein TERM 1665 2271905 - 2271891 - g 71 -12.8 -3.2964 | opp_overlap 2271888 2271884 AAATGGTTTCCACAA GCCGGC GAC GCCGGC ATGTGCCTTGACTTG Rpal_2098 2271579 - 2271950 + | hypothetical protein Rpal_2099 2273175 - 2272138 - | Appr-1-p processing domain protein TERM 1666 2272236 - 2272259 + g 79 -3.2 -5.04175 | gap 1 AGCTATGAACAGCTT CGAC-GATC CGGTTTA GATCTGTCG TTTTTGTCTCGTTCG Rpal_2100 2273858 - 2273187 - | hypothetical protein TERM 1667 2273264 - 2273275 + g 73 -3.6 -4.58685 | GTTCGACTTGCGCAG CTGC TTGG GCGG TTTTTACGCCAATTT TERM 1668 2273490 - 2273475 - G 70 -2.5 -4.69664 | opp_overlap 2273485, overlap 2273430 GAGATCACTGAAAAA CCTAG CGTAAT CCAGG GCCGCGTGGATGTCT TERM 1669 2274060 - 2274087 + H 70 -12.6 -2.89742 | GCGTCTGGTCGGTGA CCGCAGCGGAGC GTTT GCTCCTCAGCGG TATCTGGAAATTGGC TERM 1670 2274219 - 2274243 + G 78 -14.2 -3.57144 | overlap 2274234 GTCCGACGATCCTCC GCCGCGCCGC TACCT GCCGCGCGGC TTTCCGCCTGAGGGG Rpal_2101 2274202 - 2275128 + | hypothetical protein Rpal_2102 2275205 - 2276365 + | protein of unknown function DUF264 Rpal_2103 2276463 - 2276747 + | conserved hypothetical protein; putative signal peptide Rpal_2104 2277075 - 2276767 - | hypothetical protein Rpal_2105 2277925 - 2277158 - | peptidase S1 and S6 chymotrypsin/Hap TERM 1671 2277429 - 2277462 + g 89 -14.5 -4.13767 | gap 1 CCGGGGCGGCCGGTC GCGGTCAGCGTCGCGC TGC GCGCGGTGCCG-CCGC TTTTGCCGTCGCCGC Rpal_2106 2277990 - 2278550 + | phage conserved hypothetical protein, phiE125 gp8 Rpal_2107 2278547 - 2278867 + | phage head-tail adaptor TERM 1672 2278967 - 2278983 + G 77 -10.8 -3.78329 | overlap 2278929 GGATCTATGACGAGC CGCCGC GCGAG GCGGCG TTTCCGTTCGTCACG Rpal_2108 2278864 - 2279274 + | gene transfer agent (GTA) like protein Rpal_2109 2279287 - 2279694 + | phage major tail protein, TP901-1 family Rpal_2110 2279704 - 2280021 + | gene transfer agent (GTA) like protein TERM 1673 2280014 - 2280026 + F 70 -10.5 -3.64703 | CGTTTGGCGAGGCGG CGGCG TGA CGCCG TTTCCGTGGGCGGAG Rpal_2111 2280018 - 2280221 + | hypothetical protein Rpal_2112 2280218 - 2280811 + | gene transfer agent (GTA) like protein Rpal_2113 2280950 - 2281588 + | hypothetical protein Rpal_2114 2281834 - 2283228 + | hypothetical protein Rpal_2115 2283582 - 2284493 + | hypothetical protein Rpal_2116 2284533 - 2284985 + | phage cell wall peptidase, NlpC/P60 family Rpal_2117 2285050 - 2285475 + | glutathione-dependent formaldehyde-activating GFA Rpal_2118 2285981 - 2285514 - | hypothetical protein TERM 1674 2286125 - 2286111 - H 71 -8.6 -3.84825 | opp_overlap 2286111, overlap 2286120 GGTATTGACAGCAAA CTGTCA AAA TGACAG TATACTGTCATGATG TERM 1675 2286135 - 2286120 - H 72 -7.6 -4.17491 | opp_overlap 2286111, overlap 2286111 AGCAAACTGTCAAAA TGACAG TATA CTGTCA TGATGCAAGCCGATG Rpal_2119 2286135 - 2286608 + | transcriptional regulator, MarR family Rpal_2120 2286610 - 2287062 + | hypothetical protein Rpal_2121 2287089 - 2287634 + | cytochrome B561 TERM 1676 2291127 - 2291184 + G 100 -19.7 -3.39717 | gap 1, overlap 2291128 2291158 CTTGTCGCATCTACT GCGCGGGCAGGCCGGCAGCGATGCCGCG ATA CGCGATCTCG-TGCCGGCCGGCGCGCGG TTCGTGTTGCTCGAT TERM 1677 2291128 - 2291183 + G 100 -23.2 -2.63348 | gap 1, overlap 2291127 2291158 TTGTCGCATCTACTG CGCGGGCAGGCCGGCAGCGATGCCGCG ATA CGCGATCTCG-TGCCGGCCGGCGCGCG GTTCGTGTTGCTCGA TERM 1678 2291533 - 2291519 - g 70 -10 -3.64703 | overlap 2291522 TGCGGTCGATCCAAA CTAGCG TGC CGCTAG CGCTGTACGCCGCCG Rpal_2122 2287789 - 2291661 + | gene transfer agent (GTA) orfg15, like protein Rpal_2123 2291671 - 2293038 + | hypothetical protein Rpal_2124 2293254 - 2294015 + | chitinase-like protein TERM 1679 2294544 - 2294515 - g 78 -9.9 -4.09685 | TCGGACCCGCGAAAA GGTCTGCGCTGCC ACCG GGCAGGACAGCCC GGGCGTGATCGACAG Rpal_2125 2294018 - 2294590 + | hypothetical protein Rpal_2126 2294702 - 2295376 + | two component transcriptional regulator, winged helix family Rpal_2127 2295392 - 2296783 + | integral membrane sensor signal transduction histidine kinase Rpal_2128 2296880 - 2297344 + | LipA a lipoprotein TERM 1680 2298361 - 2298328 - g 71 -12.3 -3.30443 | GGACGACGAGATCAA GGTCGCGGCCACGCC TTAC GGCGTTGCCGTCACC ATGGCGATCCAGGAT Rpal_2129 2297567 - 2298970 + | hypothetical protein Rpal_2130 2299133 - 2300239 + | cytochrome c-type biogenesis protein CcmI Rpal_2131 2300353 - 2300856 + | CcmE/CycJ protein Rpal_2132 2300853 - 2302835 + | cytochrome c-type biogenesis protein CcmF Rpal_2133 2302849 - 2303346 + | cytochrome C biogenesis protein TERM 1681 2303629 - 2303602 - T 71 -12.6 -3.05384 | opp_overlap 2303603, overlap 2303605 CCGCTCCTCACTCAA GGACCCGGTCGC CGTG GCGGCCGGGTCT CCCTTGGGATGACGA TERM 1682 2303603 - 2303628 + T 86 -18.3 -2.53876 | opp_overlap 2303602 2303605 CGCTCCTCACTCAAG GACCCGGTCGC CGTG GCGGCCGGGTC TCCCTTGGGATGACG Rpal_2134 2304679 - 2303657 - | Formamidase TERM 1683 2305217 - 2305272 + r 78 -11.7 -3.71848 | gap 1, overlap 2305219 2305251 GGGCGTCGGGATTGA GCGCGTGGATGATG-GCCCGCGCCGC CTCGC GCTGCGCGGGCGTGGCGTCCACGACC TTGTTCATGACGACG TERM 1684 2305219 - 2305271 + r 70 -12.7 -2.82895 | gap 2, overlap 2305217 2305251 GCGTCGGGATTGAGC G-CGTGGATGATG-GCCCGCGCCGC CTCGC GCTGCGCGGGCGTGGCGTCCACGAC CTTGTTCATGACGAC Rpal_2136 2306999 - 2305533 - | major facilitator superfamily MFS_1 TERM 1685 2305769 - 2305752 - G 72 -5.5 -4.42062 | CATGGTGGAAATAAA GCCGG CCGCCATT CCGGC ATGACTTTCCTCGAC Rpal_2137 2307074 - 2307925 + | helix-turn-helix domain protein TERM 1686 2308018 - 2308047 + T 89 -17.1 -3.17392 | opp_overlap 2308002 2307998 2308016, overlap 2308021 CCGACGCAGAGCAGC CGGCGCGAGGCCG TGAC CGGCCTCGCGTGG TTGGGTTCGGGAGTG TERM 1687 2308021 - 2308044 + T 90 -19.6 -2.78712 | opp_overlap 2307998 2308016, overlap 2308018 ACGCAGAGCAGCCGG CGCGAGGCCG TGAC CGGCCTCGCG TGGTTGGGTTCGGGA Rpal_2138 2308577 - 2308089 - | hypothetical protein Rpal_2139 2309539 - 2308631 - | ferredoxin Rpal_2140 2309908 - 2311479 + | protease Do Rpal_2141 2311711 - 2312436 + | two component transcriptional regulator, winged helix family TERM 1688 2312559 - 2312574 + F 76 -7.6 -4.31293 | CGGTCTACCGACTTG CACTAC CTCC GTAGTG TTTCTTGGTATCTAA Rpal_2142 2312671 - 2313957 + | methyl-accepting chemotaxis sensory transducer TERM 1689 2313998 - 2314027 + F 100 -21.5 -4.65722 | AGCTATCACTCAGAC CGAGGCGTCGTCC CACA GGACGGCGCCTCG TTTCTTTATGTCTGG Rpal_2143 2314169 - 2315617 + | integral membrane sensor signal transduction histidine kinase Rpal_2144 2315614 - 2318586 + | (Glutamate--ammonia-ligase) adenylyltransferase Rpal_2145 2318896 - 2318645 - | hypothetical protein Rpal_2146 2320019 - 2318997 - | transcriptional regulator, AraC family TERM 1690 2320091 - 2320101 + H 77 -2.4 -5.00616 | GCGGCCAAGTGCTTT CAGC TTA GCGG TTTTTTCCGAGAAAG Rpal_2147 2320493 - 2323897 + | outer membrane autotransporter barrel domain protein TERM 1691 2323919 - 2323954 + T 100 -24.2 -4.59773 | CTCTCACAGCTCCAG CGAGCCCCGGTTCTGA GCGA TCAGAACCGGGGCTTG TTTTTGCGCGTGGGG TERM 1692 2324007 - 2324051 + T 80 -15 -3.24613 | gap 1, opp_overlap 2324001 2324004, overlap 2324003 TTGACCAGAGCAGCT CGGGATTCCGGGTTCGCGAGC TCTC GCTCGCGC-CCCGGAATGACG TTGCATTGATTGCTC Rpal_2148 2326513 - 2324204 - | PAS/PAC sensor signal transduction histidine kinase Rpal_2149 2328111 - 2326729 - | cation diffusion facilitator family transporter TERM 1693 2327407 - 2327464 + g 82 -16.3 -3.28791 | gap 2, opp_overlap 2327435, overlap 2327406 CGGTCCGACCATGCG GGCGCGC-AGCCGCTCGACGCCG-ACC ACACCC GGTACGGCGCCGATCGCTTCGCGCGCC TTCTCCGACACGCCT TERM 1694 2328153 - 2328183 + r 73 -11.1 -3.61178 | opp_overlap 2328149, overlap 2328154 ACGCCGGAAAGGCGC GCGACCCGTTACC CTGGT GGTAACGGGCCGG TTTGCAGTAGCTGCG TERM 1695 2328154 - 2328182 + r 75 -14.6 -2.76492 | opp_overlap 2328149, overlap 2328153 CGCCGGAAAGGCGCG CGACCCGTTACC CTGGT GGTAACGGGCCG GTTTGCAGTAGCTGC Rpal_2150 2329210 - 2328242 - | Alcohol dehydrogenase zinc-binding domain protein TERM 1696 2329229 - 2329250 + r 76 -13.7 -3.13403 | gap 1, overlap 2329227 AAGCTCGTCCTGTTT CGCTGCGCCG ATC CGGCGC-GCG TCTTACTCCGCGGCC Rpal_2151 2330251 - 2329253 - | 2-nitropropane dioxygenase NPD TERM 1697 2330375 - 2330409 + r 83 -16.5 -2.87931 | gap 1, opp_overlap 2330403 GCATTTCCGGCGTCA TTCCGGG-GCGCTCGC GTCA GCGAGCGAACCCGGAA TCTCTGCGAGATGAA Rpal_2152 2331274 - 2330489 - | fumarylacetoacetate (FAA) hydrolase TERM 1698 2331413 - 2331363 - R 91 -16.1 -3.61715 | gap 1, opp_overlap 2331364 2331383 TAGGCGTGCTAACAA CCTCGGGATTCCGGGTTCGCTCGC TGGC GCGAGCGC-CCCGGAATGACGGGG CGGGGAGCGCGGGTG Rpal_2153 2332410 - 2331430 - | 2-dehydropantoate 2-reductase TERM 1699 2332463 - 2332439 - R 77 -13.6 -3.3251 | gap 1, overlap 2332437 2332441 AGACAGACGACAAGA CAGGCGTGGCC ATTC GGCCACGCC-G CGGTGAGACCAGATT TERM 1700 2332462 - 2332441 - R 89 -17.3 -3.22182 | overlap 2332439 2332437 ACAGACGACAAGACA GGCGTGGCC ATTC GGCCACGCC GCGGTGAGACCAGAT Rpal_2154 2333803 - 2332511 - | major facilitator superfamily MFS_1 Rpal_2155 2335249 - 2333972 - | formyl-CoA transferase TERM 1701 2335300 - 2335333 + r 81 -12.3 -3.88946 | overlap 2335303 GCATCTCTCCCATCG GTACGTCCGCCGCGG CGAT CCGCGACGAACGTCC TTGTTATGTCGCGTC TERM 1702 2335303 - 2335330 + r 71 -12.6 -3.01243 | overlap 2335300 TCTCTCCCATCGGTA CGTCCGCCGCGG CGAT CCGCGACGAACG TCCTTGTTATGTCGC Rpal_2156 2336097 - 2335366 - | transcriptional regulator, GntR family TERM 1703 2336261 - 2336283 + r 74 -6.1 -4.41348 | opp_overlap 2336244 2336243 2336260, overlap 2336267 2336272 CGACCGCCAAGGCAG CGGCCCCAG CTGTC CGGGGGACG TTTGTTTGAAGGGCC Rpal_2157 2336619 - 2336407 - | hypothetical protein Rpal_2158 2336649 - 2337575 + | coenzyme PQQ biosynthesis protein B TERM 1704 2337826 - 2337782 - g 73 -10.6 -3.73775 | gap 1 TCGATCCCGATCAAA GACGC-GGTGGTGATCTCGCG GTTT CGCGACCGCGCCACCCGCGTC GAGTGGCGGCACCGC Rpal_2159 2337572 - 2338336 + | coenzyme PQQ biosynthesis protein C Rpal_2160 2338341 - 2338649 + | coenzyme PQQ synthesis D Rpal_2161 2338646 - 2339824 + | coenzyme PQQ biosynthesis protein E Rpal_2162 2340881 - 2340006 - | secretion protein HlyD family protein Rpal_2163 2341105 - 2340893 - | protein of unknown function DUF1656 Rpal_2164 2343114 - 2341102 - | Fusaric acid resistance protein conserved region TERM 1705 2343204 - 2343217 + H 76 -6.7 -4.53303 | opp_overlap 2343204 CGACCTTTACATAAA TGACC ATGG GGTCA TTTTATGTCAAGATG Rpal_2165 2343280 - 2343966 + | transcriptional regulator, TetR family TERM 1706 2344006 - 2343980 - T 72 -11.6 -3.26366 | opp_overlap 2343980, overlap 2343978 GAGATGTAACGAACA GCCTAGCCAC TTTGGTC GTGGCCAGGC TTGTACCGGCCATCC TERM 1707 2344049 - 2344086 + T 71 -6.2 -4.254 | gap 1, opp_overlap 2344052, overlap 2344050 GCCATATCTGCCGTA AGACGTCGATGCCCGGC ACGAG GCCGGGCAT-GACGGAG TTTGTTGGGTATTGG TERM 1708 2344083 - 2344052 - T 84 -16.7 -3.02263 | gap 1, opp_overlap 2344050 2344049 ATATCTGCCGTAAGA CGTCGATGCCCGGC ACGAG GCCGGGCAT-GACG GAGTTTGTTGGGTAT Rpal_2166 2345212 - 2344103 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 1709 2344545 - 2344572 + g 79 -8.4 -4.36914 | overlap 2344547 CGGCCCCATTCTTCC TTGTCGTCGTTG ATGT CGACGCCGACGA TTTTATCGGCACCGA Rpal_2167 2346834 - 2345311 - | AAA ATPase TERM 1710 2346495 - 2346481 - G 81 -12.8 -3.86015 | opp_overlap 2346477 2346474 CATGCCGTCGAGAAA CGCCGC GGC GCGGCG CATCTGGTTCTCGGC Rpal_2168 2347977 - 2346961 - | Luciferase-like monooxygenase Rpal_2169 2348712 - 2348089 - | transcriptional regulator, TetR family Rpal_2170 2348792 - 2349880 + | efflux transporter, RND family, MFP subunit Rpal_2171 2349877 - 2350950 + | efflux transporter, RND family, MFP subunit Rpal_2172 2350947 - 2353997 + | acriflavin resistance protein Rpal_2173 2353999 - 2354280 + | hypothetical protein Rpal_2174 2354312 - 2355502 + | Patatin Rpal_2175 2355561 - 2356118 + | hypothetical protein Rpal_2176 2358132 - 2356144 - | adenylate/guanylate cyclase with integral membrane sensor Rpal_2177 2359031 - 2358399 - | transcriptional regulator, TetR family Rpal_2178 2359195 - 2360310 + | efflux transporter, RND family, MFP subunit Rpal_2179 2360310 - 2363465 + | acriflavin resistance protein Rpal_2180 2363576 - 2364568 + | TIM-barrel protein, yjbN family Rpal_2181 2364921 - 2364598 - | transcriptional regulator, XRE family Rpal_2182 2365292 - 2364918 - | protein of unknown function DUF1044 Rpal_2183 2366016 - 2365480 - | putative exported protein of unknown function Rpal_2184 2366263 - 2366039 - | protein of unknown function DUF1289 Rpal_2185 2367903 - 2366308 - | integral membrane sensor signal transduction histidine kinase TERM 1711 2366912 - 2366936 + g 70 -8.5 -3.95852 | overlap 2366913 2366931 AACTCGTAGCGGCCG GCCTCGATCCG CGA CAGATCGAGGA TTTCGTTGATCAGGT TERM 1712 2367550 - 2367526 - G 70 -8.4 -3.99324 | opp_overlap 2367531, overlap 2367510 GTCGAGCAGCACAAA GCGCCGCCGC CAGGT GCGGGTGCGC GGCACCGAGGCCGGC Rpal_2186 2368941 - 2368072 - | 6-phosphogluconate dehydrogenase NAD-binding TERM 1713 2369488 - 2369533 + G 76 -15.4 -2.87564 | gap 2, opp_overlap 2369464 TCGCGTTGACTGCCG AGCGTCA-GCCGGGCAGC-GCG CCGG CGCAGCGGCCCGGCGTGGCGCC TGTGTCGGCGCATCG Rpal_2187 2369250 - 2370362 + | putative multidrug-resistance related protein TERM 1714 2370544 - 2370554 + F 90 -2.4 -5.52384 | opp_overlap 2370538, overlap 2370534 CGCCACCAACGGCTC CGCG GTT CGCC TTTTTTTGGTCGGGC Rpal_2188 2370613 - 2371704 + | TRAP dicarboxylate transporter- DctP subunit TERM 1715 2371714 - 2371765 + T 100 -24.6 -3.21099 | opp_overlap 2371720 2371726 2371727, overlap 2371727 GGCTGATCTGAACGC CTGAAACGAAAAGGCCCGGCCTCC GCGA GGAGGCCGGGCTTTTTTGTTGCCG TTCGTCATAGGGAGG TERM 1716 2371759 - 2371720 - T 100 -20.8 -3.57561 | opp_overlap 2371714 2371727, overlap 2371726 2371727 TCTGAACGCCTGAAA CGAAAAGGCCCGGCCTCC GCGA GGAGGCCGGGCTTTTTTG TTGCCGTTCGTCATA TERM 1717 2371753 - 2371726 - T 100 -18.4 -4.54727 | opp_overlap 2371714 2371727, overlap 2371720 2371727 CGCCTGAAACGAAAA GGCCCGGCCTCC GCGA GGAGGCCGGGCT TTTTTGTTGCCGTTC TERM 1718 2371727 - 2371752 + T 100 -21.9 -5.4756 | opp_overlap 2371726 2371720 2371727, overlap 2371714 GCCTGAAACGAAAAG GCCCGGCCTCC GCGA GGAGGCCGGGC TTTTTTGTTGCCGTT TERM 1719 2371752 - 2371727 - T 100 -21.9 -3.32354 | opp_overlap 2371727 2371714, overlap 2371726 2371720 GCCTGAAACGAAAAG GCCCGGCCTCC GCGA GGAGGCCGGGC TTTTTTGTTGCCGTT TERM 1720 2371856 - 2371815 - T 93 -21.1 -3.06183 | opp_overlap 2371820 2371824, overlap 2371793 2371820 2371824 GTCACTGCGAGCGAA GCGAAGCAATCCAGCTCAG GGCA CTGAACTGGATTGCTTCGT CGCTGCGCTCCTCGC TERM 1721 2371851 - 2371820 - T 91 -18.2 -3.19192 | opp_overlap 2371820 2371824, overlap 2371815 2371824 TGCGAGCGAAGCGAA GCAATCCAGCTCAG GGCA CTGAACTGGATTGC TTCGTCGCTGCGCTC TERM 1722 2371820 - 2371851 + T 86 -16 -3.18582 | opp_overlap 2371815 2371820 2371824, overlap 2371824 TGCGAGCGAAGCGAA GCAATCCAGCTCAG GGCA CTGAACTGGATTGC TTCGTCGCTGCGCTC TERM 1723 2371847 - 2371824 - T 74 -11.8 -3.40788 | opp_overlap 2371824 2371820, overlap 2371820 2371815 AGCGAAGCGAAGCAA TCCAGCTCAG GGCA CTGAACTGGA TTGCTTCGTCGCTGC Rpal_2189 2373734 - 2371893 - | TRAP dicarboxylate transporter, DctM subunit Rpal_2190 2374368 - 2373772 - | Tripartite ATP-independent periplasmic transporter DctQ component TERM 1724 2374566 - 2374584 + r 72 -12.4 -3.29144 | GGTGACGCTCATGTG CCGGCTGA CGC TCGGCCGG TTATGGCGGCGGTCG Rpal_2191 2375576 - 2374542 - | molybdenum cofactor biosynthesis protein A TERM 1725 2375762 - 2375707 - R 81 -15.2 -3.09516 | gap 1 TGCCGGAGCAGGGAA CGGCG-AGCCCGCGGCCGGAGCGTCGG CGG CCGGCGCCGCAGCGGCGGGCTTCGGCT TGCGCGGCTTGCGGA Rpal_2192 2376132 - 2375683 - | hypothetical protein Rpal_2193 2376973 - 2376296 - | phosphoglycolate phosphatase TERM 1726 2376593 - 2376575 - G 72 -11.6 -3.55071 | GCAGATCGCCGCAAA GCGCGGGC TGA GCCCGAGC CGGTCGAGCAGCAGC Rpal_2194 2377124 - 2377822 + | ribose 5-phosphate isomerase Rpal_2195 2377849 - 2378358 + | hypothetical protein Rpal_2196 2378376 - 2379761 + | glutathione-disulfide reductase TERM 1727 2380129 - 2380102 - g 70 -10.4 -3.68222 | opp_overlap 2380101 2380102 GCGCAACCTGAAGAA GGCGCTGGCCAC GGTG GCGGCCGGCGAC GCTTTCCTGCTCCAG Rpal_2197 2379950 - 2381338 + | phospho-2-dehydro-3-deoxyheptonate aldolase Rpal_2198 2381469 - 2381822 + | diacylglycerol kinase TERM 1728 2382270 - 2382255 - g 74 -7.5 -4.25104 | CGTGTTCGATGAAAA GCGGG TGTTCG CCCGC GGCCCGGTTTCGGGC Rpal_2199 2381869 - 2383632 + | NAD+ synthetase TERM 1729 2383845 - 2383889 + T 73 -2.8 -4.72272 | gap 2, overlap 2383852 CACGCCTCAGTGATT TCGGTCAGCGAGTGTCGTCGCC TCT GTCGACG-CGCTCACTT-CTGA TTTTTGATGACGAAG Rpal_2200 2384209 - 2383880 - | hypothetical protein Rpal_2201 2385444 - 2384437 - | transcriptional regulator, AraC family TERM 1730 2384582 - 2384568 - G 77 -12.8 -3.65902 | overlap 2384547 CCGATGTCACCGAAA GCGCCG GAT CGGCGC CGGCCAGCATCTGGC TERM 1731 2386534 - 2386546 + G 71 -9.1 -3.87815 | opp_overlap 2386519 2386525 CAACACCGCACTGGG GTCGC GCC GCGAC TTTCTCGGCCTCGCG Rpal_2202 2386502 - 2388292 + | sulfatase Rpal_2203 2388328 - 2389377 + | hypothetical protein TERM 1732 2389561 - 2389575 + T 83 -7 -4.86939 | overlap 2389562 TCGCGTTTGGCCCTT AGCGGC CGT GCCGCG TTTTTGGATTTGTTG Rpal_2204 2390042 - 2389632 - | PilT protein domain protein Rpal_2205 2390483 - 2390908 + | Cupin 2 conserved barrel domain protein TERM 1733 2390945 - 2390923 - T 100 -20.6 -4.19258 | opp_overlap 2390923 AGACCTCACGCAAAA GAGGCCGCCG TTT CGGCGGCCTC TTTTGGCTCGGAGAA TERM 1734 2390923 - 2390945 + T 100 -20.6 -4.18018 | opp_overlap 2390923 AGACCTCACGCAAAA GAGGCCGCCG TTT CGGCGGCCTC TTTTGGCTCGGAGAA Rpal_2206 2392174 - 2391005 - | hypothetical protein Rpal_2207 2392668 - 2392360 - | hypothetical protein Rpal_2208 2393070 - 2394545 + | cysteinyl-tRNA synthetase TERM 1735 2394690 - 2394723 + F 87 -18.9 -2.80935 | gap 1 GGCCTCACCCCGTCA TTCCGGG-GCGCCCGC GCA GCGGGCGAACCCGGAA TCTCGTCGCTACAAT TERM 1736 2394790 - 2394738 - f 84 -15.6 -3.28791 | gap 1, overlap 2394739 ATCTCGTCGCTACAA TCTCGGGATTCCGGGTCTGCGCTGC TGGC GCAGCGCAT-CCCGGAATGACGAGC GATAGGGTCCTTGCG TERM 1737 2394789 - 2394739 - f 87 -19.1 -2.57132 | gap 1, overlap 2394738 TCTCGTCGCTACAAT CTCGGGATTCCGGGTCTGCGCTGC TGGC GCAGCGCAT-CCCGGAATGACGAG CGATAGGGTCCTTGC Rpal_2209 2394829 - 2394960 + | hypothetical protein TERM 1738 2395444 - 2395421 - g 77 -10.2 -4.00038 | gap 1, opp_overlap 2395436 2395440 CACCACGATGACAAA GTCGCTGGCGG ATT CCGCC-GCGCC CGGAGCTTCCTCATG Rpal_2210 2394960 - 2395460 + | GCN5-related N-acetyltransferase Rpal_2211 2395457 - 2397055 + | 2-isopropylmalate synthase/homocitrate synthase family protein TERM 1739 2397103 - 2397133 + F 100 -21.9 -4.41348 | GACAGTTCTGCGTAA GGGCGTACCGCCG AGATC CGGCGGTGCGCCC TTTGTTTGCGCGGCG TERM 1740 2398045 - 2398076 + G 77 -5.1 -4.65168 | gap 1, overlap 2398046 2398050 AAGACGTCGAGCAAC TGATCCTGGTCGGC GCCAA GCCG-CCAGTGTCG TTTTTCGCCTATCCT Rpal_2212 2397237 - 2398793 + | thiamine pyrophosphate domain protein TPP-binding Rpal_2213 2398805 - 2400214 + | FAD linked oxidase domain protein Rpal_2214 2402308 - 2400239 - | Gluconate 2-dehydrogenase (acceptor) TERM 1741 2400344 - 2400379 + g 83 -9.7 -4.33417 | CGCGACGTCGACCGC TTCCTGATCGGACAG CTCACC CTGGCCGAGCGGGAA TTTGTTGTGGCTCGC Rpal_2215 2403126 - 2402491 - | hypothetical protein Rpal_2216 2403285 - 2405240 + | ABC transporter related Rpal_2217 2405289 - 2405987 + | phosphatidylserine decarboxylase related protein Rpal_2218 2406062 - 2406934 + | CDP-diacylglycerol/serine O-phosphatidyltransferase Rpal_2219 2407085 - 2407804 + | hypothetical protein Rpal_2220 2408036 - 2408809 + | MotA/TolQ/ExbB proton channel TERM 1742 2409652 - 2409633 - g 70 -10.6 -3.55444 | opp_overlap 2409645 CGCTGATGCGTGAAA GCCCGGCG CTGC CGCCCGGC ATGAAGCCGTAGGCG Rpal_2221 2408840 - 2409664 + | OmpA/MotB domain protein TERM 1743 2410803 - 2410842 + G 80 -15 -3.37796 | gap 1, opp_overlap 2410825, overlap 2410804 GCTGATGGCGACGGC GGCGACGGTGATCGCCAGC CAA GC-GGTGATCACCGGCGCG TTCTCGCTGATCAGC TERM 1744 2410804 - 2410841 + G 87 -18.5 -2.62463 | gap 1, opp_overlap 2410825, overlap 2410803 CTGATGGCGACGGCG GCGACGGTGATCGCCAGC CAA GC-GGTGATCACCGGCGC GTTCTCGCTGATCAG Rpal_2222 2409898 - 2411787 + | K potassium transporter Rpal_2223 2411997 - 2412323 + | Rhodanese domain protein TERM 1745 2413307 - 2413338 + G 78 -15.2 -3.28924 | gap 1 TCACCGTCGATCTGT CGCCGC-TCGGTCTC AAC GAGACCGACGAGGCG TTCTGCAAGCGGATC TERM 1746 2413482 - 2413446 - g 74 -5.2 -4.56597 | gap 1, overlap 2413447 2413450 CTGTTTCGCCAAAAA GGATCAGACGCTCGA CACTGCCC TCGAGCGCCTG-TCG GATGCGGTTCACGGG Rpal_2224 2412346 - 2413503 + | aminotransferase class I and II Rpal_2225 2413511 - 2414626 + | extracellular solute-binding protein family 1 TERM 1747 2415177 - 2415148 - g 73 -4.1 -4.59853 | TGAAGGCGTCAAAAA GCGTTGGTCCCGA GACG CCGGGACAATGGC TGGTGATGAAAGCGC Rpal_2226 2414739 - 2415878 + | protein of unknown function DUF1551 Rpal_2227 2417852 - 2415894 - | Radical SAM domain protein Rpal_2228 2419070 - 2418138 - | lipid A biosynthesis acyltransferase Rpal_2229 2420092 - 2419070 - | Alcohol dehydrogenase zinc-binding domain protein Rpal_2230 2421469 - 2420189 - | Beta-ketoacyl synthase Rpal_2231 2422688 - 2421480 - | Beta-ketoacyl synthase Rpal_2232 2423151 - 2422681 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ Rpal_2233 2423458 - 2423177 - | phosphopantetheine-binding TERM 1748 2423576 - 2423592 + r 78 -10.1 -4.07568 | opp_overlap 2423576 2423577, overlap 2423577 TCAATGGCGGGCAAA TCCACGC ATT GCGTGGG TTTTGAGCAACCGAC Rpal_2234 2423978 - 2423625 - | hypothetical protein Rpal_2235 2424175 - 2424798 + | Putative ParB-like nuclease Rpal_2236 2425286 - 2424807 - | MgtC/SapB transporter TERM 1749 2425733 - 2425752 + G 82 -11.4 -4.04206 | AGGACCTGAATTTCC CGGCAGCG GGAG CGCTGTCG TTTGTCTGCGCGTCG TERM 1750 2426816 - 2426797 - g 74 -5.7 -4.5032 | gap 1 GACAGCAACAACAAA TCGGC-CG CCATC CGTGCCGA GTACGATCTGACCGA TERM 1751 2427026 - 2427002 - g 70 -11.3 -3.57144 | overlap 2427018 GCGGCCAGTTCGAAA CCGGACCGGTG AAG CACCGGGTCGG CGTTGCGGCGTCCGG Rpal_2237 2425702 - 2428035 + | TonB-dependent siderophore receptor Rpal_2238 2429791 - 2428040 - | protein of unknown function DUF87 Rpal_2239 2430124 - 2430705 + | hypothetical protein Rpal_2240 2431623 - 2430730 - | phosphoserine phosphatase SerB TERM 1752 2431645 - 2431670 + H 88 -16.1 -3.28712 | GGAAGGTCCGGAACG GCACGGCCGGC GGCC GGCGGCCGTGC TTATCGCAGGGCCGA Rpal_2241 2431667 - 2432572 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1753 2432833 - 2432849 + F 100 -7.2 -5.60689 | CGGACGGTGCGCTGA GGGCCT TCGAC GGGCCC TTTTTTATTGTCTGA Rpal_2242 2432938 - 2434716 + | acetolactate synthase, large subunit, biosynthetic type TERM 1754 2434774 - 2434739 - f 77 -12.6 -3.61398 | gap 1, opp_overlap 2434739 2434738 CGCTTGCTTCAAGAA CGACGTCATGCGCGGGC GTG ACCCGCGCATC-CATCG ATTTCCGCTCATTGC Rpal_2243 2434848 - 2435390 + | acetolactate synthase, small subunit Rpal_2244 2435792 - 2435394 - | hypothetical protein Rpal_2245 2435977 - 2436879 + | protein of unknown function DUF6 transmembrane Rpal_2246 2437074 - 2438093 + | ketol-acid reductoisomerase TERM 1755 2438281 - 2438304 + F 100 -16 -5.01811 | TACAGCCAATGCGAA CGGGATCGCG GTGA CGCGGTCCCG TTTTTCGTTTGGTGC TERM 1756 2438960 - 2438977 + G 74 -2.6 -4.71828 | overlap 2438963 GATCCGCCGCCGGTC GCTCGA CGATCA TCGCGC TTTTGTTGCTGCGAT Rpal_2247 2438382 - 2439110 + | GntR domain protein Rpal_2248 2439209 - 2440441 + | Extracellular ligand-binding receptor TERM 1757 2440489 - 2440445 - f 73 -11.2 -3.61398 | opp_overlap 2440446, overlap 2440414 2440446 GCGGGGCGGTAACAA CGCTTCGGCACGCCGCGCGG TTCGG CCGCGCGGCAGGCCCGATCA ACTGTCATGCAACGG TERM 1758 2440502 - 2440525 + F 100 -16 -4.82667 | opp_overlap 2440502 TCAACTGTCATGCAA CGGGATCGCG GTGA CGCGGTCCCG TTTTTGCTGTGATAG TERM 1759 2440525 - 2440502 - f 75 -13.8 -3.06831 | opp_overlap 2440502 TCAACTGTCATGCAA CGGGATCGCG GTGA CGCGGTCCCG TTTTTGCTGTGATAG Rpal_2249 2440568 - 2441422 + | short-chain dehydrogenase/reductase SDR Rpal_2250 2442009 - 2443073 + | hypothetical protein Rpal_2251 2444772 - 2443225 - | Substrate-binding region of ABC-type glycine betaine transport system TERM 1760 2444331 - 2444283 - G 73 -11 -3.68351 | gap 2 TGCCGATCACCCAAA CCGCCGCCGTGCGGATGCCGGCCA TGA TCACCGGCATT-GC-CAGCGGCAG CTCGACCATGGTGAG Rpal_2252 2445542 - 2444769 - | ABC transporter related Rpal_2253 2445611 - 2446471 + | ABC transporter related TERM 1761 2446787 - 2446811 + G 70 -8.5 -4.02817 | overlap 2446779 2446778 GACCACTGTGCCGAT CGCCGGCAG GTTGCTG CTGCCGCCG TTCTTCTTCTCGACG Rpal_2254 2446701 - 2447495 + | binding-protein-dependent transport systems inner membrane component Rpal_2255 2447554 - 2448576 + | NMT1/THI5 like domain protein Rpal_2256 2448584 - 2449300 + | hypothetical protein TERM 1762 2449311 - 2449347 + T 100 -20.2 -4.42639 | opp_overlap 2449304, overlap 2449313 2449314 ACTGATAACTTGCCG GCTCGTCATGGCCGGG ATGAA CCCGGCCATGACGGTC TTTTGGTTCGCGTCT TERM 1763 2449313 - 2449345 + T 100 -21.4 -3.81651 | opp_overlap 2449304, overlap 2449311 2449314 TGATAACTTGCCGGC TCGTCATGGCCGGG ATGAA CCCGGCCATGACGG TCTTTTGGTTCGCGT TERM 1764 2449314 - 2449344 + T 100 -22.7 -2.88268 | opp_overlap 2449304, overlap 2449313 2449311 GATAACTTGCCGGCT CGTCATGGCCGGG ATGAA CCCGGCCATGACG GTCTTTTGGTTCGCG Rpal_2257 2450372 - 2449362 - | biotin synthase TERM 1765 2450693 - 2450679 - g 73 -12.8 -3.37344 | TCGGGATGGAAGGAA CGGCGG TTA CCGCCG CGTCCACGATTCCGG Rpal_2258 2450642 - 2450791 + | hypothetical protein Rpal_2259 2450888 - 2452462 + | 2-isopropylmalate synthase TERM 1766 2452544 - 2452521 - f 81 -13.9 -3.55622 | opp_overlap 2452521 2452532 TGGAACGGTTCGAAA GGGCGATGC CGCTGT GCATCGCCC TTTTTCCGCGCTGCA TERM 1767 2452521 - 2452544 + F 100 -13.9 -4.58395 | opp_overlap 2452521, overlap 2452532 TGGAACGGTTCGAAA GGGCGATGC CGCTGT GCATCGCCC TTTTTCCGCGCTGCA TERM 1768 2453523 - 2453510 - g 70 -3.7 -4.48987 | GTCGCAGAAGGAAAA CGCGG AAGC CCTCG AGGAGATGAAGAAGT Rpal_2260 2452686 - 2453690 + | TRAP dicarboxylate transporter, DctP subunit TERM 1769 2453739 - 2453691 - f 74 -11.6 -3.39895 | gap 1, opp_overlap 2453696 2453702, overlap 2453694 GGCCCGACCAAGTAA CATTTGCGAACGGGCGCCCGCGT TCCG ACGCGGGCGCCCTCT-GCTTTTG CCGGACCGCAGGGGC TERM 1770 2453696 - 2453734 + F 100 -18.9 -4.07568 | gap 1, opp_overlap 2453694 2453691, overlap 2453702 GACCAAGTAACATTT GCGAACGGGCGCCCGCGT TCCG ACGCGGGCGCCC-TCTGC TTTTGCCGGACCGCA TERM 1771 2453702 - 2453729 + F 100 -24.2 -3.09823 | opp_overlap 2453694 2453691, overlap 2453696 GTAACATTTGCGAAC GGGCGCCCGCGT TCCG ACGCGGGCGCCC TCTGCTTTTGCCGGA TERM 1772 2453879 - 2453903 + G 73 -14.3 -3.15861 | TCTGATTGCCACGAT GATCGGCGGCG CCA CGCTGCTGATC TTCATCGCGGTGATG Rpal_2261 2453829 - 2454413 + | Tripartite ATP-independent periplasmic transporter DctQ component TERM 1773 2455362 - 2455339 - g 72 -5.2 -4.41494 | overlap 2455342 GATGGCCAACGAAAA CATCCCGCAA CAGA TCGCGAGCTG GATGTCGACTGCGGG Rpal_2262 2454410 - 2455735 + | TRAP dicarboxylate transporter, DctM subunit TERM 1774 2455834 - 2455877 + F 74 -11.8 -3.40403 | overlap 2455820 2455835 CGACGGGCAGGGCGC TCATCTTCATGGCTACCTTT TGAA GGAGGTTGCCATGAAGAAGG TTCTGCTCGCCGGCG Rpal_2263 2455868 - 2456467 + | putative exported protein of unknown function TERM 1775 2456756 - 2456735 - T 78 -2.9 -5.08169 | gap 1, overlap 2456737 ACAGATCCGAAAAAA GTCGTCC-GC ATT GCTGGACATC CCCGGTGGGCTTTGC Rpal_2264 2457260 - 2456985 - | hypothetical protein Rpal_2265 2457307 - 2457483 + | hypothetical protein Rpal_2266 2457635 - 2457504 - | hypothetical protein Rpal_2267 2458128 - 2457778 - | hypothetical protein Rpal_2268 2458355 - 2458128 - | hypothetical protein Rpal_2269 2458677 - 2458366 - | hypothetical protein Rpal_2270 2459120 - 2458668 - | hypothetical protein Rpal_2271 2459561 - 2459253 - | hypothetical protein Rpal_2272 2461594 - 2459573 - | ATPase associated with various cellular activities AAA_5 Rpal_2273 2461677 - 2462114 + | hypothetical protein TERM 1776 2462503 - 2462481 - f 74 -10.5 -3.78329 | opp_overlap 2462480, overlap 2462482 CGCCACGAAGCCAAA GCGTCCGCG CCCGC CGCGGATGC GGCCGATGCATGCGC Rpal_2274 2462509 - 2462652 + | hypothetical protein Rpal_2275 2462645 - 2463049 + | hypothetical protein TERM 1777 2463139 - 2463181 + F 88 -14.8 -3.74792 | opp_overlap 2463139, overlap 2463154 CGATCTCCGGCACAA CGCCCATCGCGGTTCCGC AAGGAGA GCCCCACCGCGATGGGCG TTTCCATGTGTGCTA TERM 1778 2463181 - 2463139 - f 82 -14.8 -3.29144 | opp_overlap 2463139 2463154 CGATCTCCGGCACAA CGCCCATCGCGGTTCCGC AAGGAGA GCCCCACCGCGATGGGCG TTTCCATGTGTGCTA Rpal_2277 2463449 - 2464042 + | DEAD/DEAH box helicase-like protein TERM 1779 2464218 - 2464254 + F 93 -18 -3.39327 | opp_overlap 2464219, overlap 2464219 CGTGGCATGTACCTA AGCGCTCCGAAGCCGT GCCCG ACGGCATCGGAGCGCA TTATAGCTCTCGGAA TERM 1780 2464219 - 2464253 + F 100 -21.5 -2.63382 | opp_overlap 2464219, overlap 2464218 GTGGCATGTACCTAA GCGCTCCGAAGCCGT GCCCG ACGGCATCGGAGCGC ATTATAGCTCTCGGA TERM 1781 2464253 - 2464219 - f 100 -21.5 -3.07816 | opp_overlap 2464219 2464218 GTGGCATGTACCTAA GCGCTCCGAAGCCGT GCCCG ACGGCATCGGAGCGC ATTATAGCTCTCGGA TERM 1782 2464662 - 2464623 - g 77 -16.6 -2.78596 | opp_overlap 2464623 CAGGGCTTGAGGACA TTCGCGCAACCTTTCCAA AGCA TTGGAAGGGCTACGCGAA TTTCGTCATGCGCCA TERM 1783 2464623 - 2464662 + G 83 -14.4 -3.78775 | opp_overlap 2464623 CAGGGCTTGAGGACA TTCGCGCAACCTTTCCAA AGCA TTGGAAGGGCTACGCGAA TTTCGTCATGCGCCA Rpal_2278 2464559 - 2469316 + | NERD domain protein TERM 1784 2469643 - 2469621 - g 71 -12.1 -3.28712 | GCCGTTGTCCGACAA GCTCGATCT GTTTG AGATCGAGC AGATCACCCCCACAG Rpal_2279 2469313 - 2470791 + | hypothetical protein TERM 1785 2471981 - 2472004 + F 93 -9.5 -4.71061 | opp_overlap 2471946 2471983, overlap 2471983 TCGGTGTTCACGAAA AACCCCGCC AGCAAC GGCGGGGTC TTTTTCACTATCGCT TERM 1786 2472002 - 2471983 - f 100 -12.8 -4.72272 | opp_overlap 2471981 2471983, overlap 2471946 GGTGTTCACGAAAAA CCCCGCCA GCAA CGGCGGGG TCTTTTTCACTATCG TERM 1787 2471983 - 2472002 + F 83 -12.1 -3.96999 | opp_overlap 2471946 2471983, overlap 2471981 GGTGTTCACGAAAAA CCCCGCC AGCAAC GGCGGGG TCTTTTTCACTATCG Rpal_2281 2472192 - 2472608 + | histidine kinase Rpal_2282 2472874 - 2472605 - | transcriptional regulator, XRE family Rpal_2283 2473021 - 2473557 + | hypothetical protein Rpal_2285 2474801 - 2474118 - | hypothetical protein Rpal_2286 2475251 - 2476168 + | cation diffusion facilitator family transporter TERM 1788 2477140 - 2477116 - g 78 -9.9 -4.15222 | overlap 2477117 ACCCCTCTTAAGAAA GGGGCGCATCA GAC TGAAGCGCCCG CAGAAATTGCACCCA TERM 1789 2477139 - 2477117 - g 72 -13.4 -3.08812 | overlap 2477116 CCCCTCTTAAGAAAG GGGCGCATCA GAC TGAAGCGCCC GCAGAAATTGCACCC Rpal_2287 2476693 - 2477169 + | MgtC/SapB transporter Rpal_2288 2477558 - 2479060 + | hypothetical protein TERM 1790 2479135 - 2479108 - T 89 -12.6 -4.18018 | GGTGGTTAGTGAAAA CAGGGAGTGGCC AGTT GGCCTCACCCTG TCCCGACGTTGCGTC Rpal_2289 2480004 - 2479753 - | hypothetical protein Rpal_2290 2480741 - 2480211 - | transcriptional regulator, MarR family Rpal_2291 2481522 - 2480914 - | SNARE associated Golgi protein TERM 1791 2481025 - 2481011 - G 71 -2.7 -4.63486 | opp_overlap 2481011 ACTGGCTCAACAAAA CGTCC GATCA GGGCG TAGTTCTGTCCCATC TERM 1792 2481478 - 2481490 + g 75 -4.7 -4.67608 | opp_overlap 2481472 2481468 TAGAAGGAAGACGCC GACGG CTC CCGCC TTTTCTATTCCACTC Rpal_2292 2481923 - 2481624 - | hypothetical protein Rpal_2293 2484563 - 2482002 - | heavy metal translocating P-type ATPase TERM 1793 2482480 - 2482493 + g 74 -2.3 -4.77036 | overlap 2482475 2482481 2482485 CCAACCTCCCCGGCG ATCGC TTCG GCGAC TTTTTGATGATCGCC TERM 1794 2483250 - 2483264 + g 75 -3.4 -4.84529 | overlap 2483251 AAATCTGTCGGTGAA CCGCTG CGT CGGCGA TTTTTGGGTTTCTGC Rpal_2294 2485463 - 2484729 - | flagellar basal body rod protein Rpal_2295 2486365 - 2485784 - | hypothetical protein TERM 1795 2487348 - 2487362 + G 75 -7.2 -4.41348 | CCGCTCTGCTCGATG TAAAGG GTT CCTTTA TTTCTTTCCAAGCAA Rpal_2296 2487098 - 2487619 + | transcriptional regulator, MarR family Rpal_2297 2487759 - 2488145 + | hypothetical protein Rpal_2298 2488205 - 2489476 + | outer membrane efflux protein Rpal_2299 2489473 - 2490465 + | efflux transporter, RND family, MFP subunit TERM 1796 2490746 - 2490734 - g 70 -10.5 -3.75629 | CATTTCCAATCGAAA CCGCC ATG GGCGG GCTGCCGAACCTCGT TERM 1797 2492099 - 2492070 - g 77 -5.7 -4.67038 | gap 1, overlap 2492072 CTCTGAAAAGGAAAA TTGGTTC-ATGCGC CTC GCGCATCGGACCTA CGTGCCACTGCTCGA TERM 1798 2492676 - 2492698 + G 77 -11.2 -3.7732 | opp_overlap 2492675 TGCCGATGTCAAGAC CGAGCAGGTC GCG GGCCTGCCCG TTCTTACTGTGAAGC Rpal_2300 2490523 - 2493735 + | heavy metal efflux pump, CzcA family TERM 1799 2493877 - 2493891 + G 81 -8.6 -4.56597 | opp_overlap 2493875 2493877, overlap 2493865 TGGCGTCCGGAAAGA CGTTGA CTT TCAACG TTTTTGACGAAGCCA Rpal_2301 2493735 - 2494103 + | hypothetical protein TERM 1800 2494159 - 2494127 - f 70 -12.8 -2.8655 | gap 1 TTTAGTCATACGACA GCG-CGAAGCGCC TACCCACC GGCGCTTCGACGC TACCGAAGATGATAG Rpal_2302 2494175 - 2495341 + | putative OpgC protein TERM 1801 2497267 - 2497297 + G 91 -16.2 -3.8211 | gap 1, overlap 2497267 CGACAGCCCGCGGGT GG-CCGCTGCGGC CGGGAC GCCGCAGCGGACC TTCTTCTCGATGCCG TERM 1802 2497267 - 2497296 + G 79 -16.4 -2.88945 | overlap 2497267 CGACAGCCCGCGGGT GGCCGCTGCGGC CGGGAC GCCGCAGCGGAC CTTCTTCTCGATGCC Rpal_2303 2497057 - 2497431 + | hypothetical protein Rpal_2304 2497442 - 2497792 + | hypothetical protein Rpal_2305 2497792 - 2498040 + | hypothetical protein Rpal_2306 2498644 - 2498405 - | hypothetical protein Rpal_2307 2499031 - 2498699 - | hypothetical protein Rpal_2308 2499213 - 2499040 - | hypothetical protein TERM 1803 2499358 - 2499320 - R 81 -6.4 -4.77165 | opp_overlap 2499320 2499337, overlap 2499321 2499342 GCTCCTAGAACAAAA TGCGCCCGCACCGGCGGC AGA ACCGGCCTTGCCGGCGCC GTGTTTCCGGATCCC Rpal_2309 2499941 - 2499654 - | hypothetical protein TERM 1804 2499912 - 2499881 - G 70 -10 -3.64703 | gap 1 GCTGCTCGACGTAAA GGGCGGCCAGCTCCG CAT CGGCGC-GGCCATCC CACTCCTTCCAGTTA TERM 1805 2500093 - 2500073 - H 71 -13.9 -2.66316 | overlap 2500070 GCTTCGACGAGATCA CGCCGCGGC GCC GCCCCGGCG AGCCACAGGTGGAGC Rpal_2310 2500353 - 2500859 + | hypothetical protein Rpal_2311 2501148 - 2500831 - | hypothetical protein TERM 1806 2501237 - 2501267 + H 73 -11.2 -3.59979 | gap 1, opp_overlap 2501236 TATCGTGGAGTTAAG TCCGT-CGGTCGC ATTTTA GCGACCGGGCGGA TTTCAGATCGCCAGC TERM 1807 2501583 - 2501609 + G 73 -6.5 -4.36914 | gap 1, opp_overlap 2501583 2501584 2501586, overlap 2501583 2501584 2501586 CCATCTTCTCCAGAA CG-ACGCCGTCG AGAT CGGCTGCGTCCG TTTTGTCGGCGGCAC Rpal_2312 2501293 - 2502141 + | metallophosphoesterase Rpal_2313 2502141 - 2502623 + | VRR-NUC domain protein Rpal_2314 2502620 - 2503195 + | hypothetical protein Rpal_2315 2503192 - 2503536 + | hypothetical protein Rpal_2316 2504509 - 2503568 - | DNA polymerase LigD, ligase domain protein Rpal_2317 2504647 - 2504940 + | hypothetical protein TERM 1808 2504958 - 2504917 - gf 89 -5.8 -5.19261 | gap 3 AAAGTCAGCAAAAAA GCG-CGTCCCGGCGCC-CGCC GCT GATGAGGCGTCG-GACGTCGC GCATCCGGCGCTCGA Rpal_2318 2504894 - 2505142 + | hypothetical protein Rpal_2319 2505146 - 2506021 + | hypothetical protein TERM 1809 2506345 - 2506326 - g 85 -10 -4.1891 | gap 1 GGCGCTGAAGATAAA CGACGCGCG TGT CGC-CGTCG TCCATGGAAGCTGGA Rpal_2320 2506018 - 2506560 + | hypothetical protein TERM 1810 2506601 - 2506643 + F 91 -16.5 -3.63627 | opp_overlap 2506599 2506598 2506610 2506634 2506635 AAGATCGACCAACTT TCCCTCAAACTTTCCCTCA ACGAA TGAGTGAAAGTCTGAGGGA TTTAGGCTCTGCAAA TERM 1811 2506681 - 2506723 + F 100 -26.7 -3.72324 | ACAATCGGCCGACTT TCCCTCAGACTTTCACTCA CCGTT TGAGTGAAAGTCTGAGGGA TTATTGATAACGCTC Rpal_2321 2507151 - 2507495 + | hypothetical protein Rpal_2322 2507566 - 2508195 + | hypothetical protein Rpal_2323 2508206 - 2508478 + | hypothetical protein Rpal_2324 2509047 - 2508562 - | hypothetical protein Rpal_2325 2509855 - 2509550 - | hypothetical protein TERM 1812 2510046 - 2510016 - H 81 -15.4 -3.01712 | overlap 2510029 CGTCGGGGGGCAAGA CCGTCGGCAGCAAC TCG GTCGCTGCCGTCAG GCTCGCGACCGCGCT TERM 1813 2510240 - 2510199 - H 73 -10.7 -3.55548 | overlap 2510201 GAAGATGGTCTTAAA GATGTCGCTCATCAGCGCG ACGG CGCGCCGAGCAGCGTCAGC CCGAAGCCGCCGCGA TERM 1814 2510238 - 2510201 - H 72 -11.9 -3.35224 | overlap 2510199 AGATGGTCTTAAAGA TGTCGCTCATCAGCGCG ACGG CGCGCCGAGCAGCGTCA GCCCGAAGCCGCCGC Rpal_2326 2510751 - 2510909 + | hypothetical protein Rpal_2327 2510995 - 2511282 + | hypothetical protein Rpal_2328 2511745 - 2512023 + | hypothetical protein Rpal_2329 2513784 - 2512768 - | hypothetical protein Rpal_2330 2514112 - 2514834 + | transcriptional regulator, LuxR family Rpal_2331 2514924 - 2515562 + | autoinducer synthesis protein TERM 1815 2516443 - 2516488 + F 74 -2.5 -4.89852 | gap 2, overlap 2516445 2516448 CCGCACCGTTGTTTG TGGTAGCCCCGCCGGGAGGCG CCTGCA CGT-TCTCCGCGGCGCT-CCG TTTTTCTGCCTGTCG Rpal_2334 2518491 - 2518646 + | hypothetical protein Rpal_2335 2520261 - 2518798 - | hypothetical protein TERM 1816 2519265 - 2519280 + g 73 -6.1 -4.30719 | GGGGGGTTACCGAGG GGCTG TCATAC CAGCC TTTGTTGTGGAGCCA TERM 1817 2519461 - 2519449 - G 70 -6.3 -4.21908 | GAGCAGCATCGAAAA CACTA TCA TAGTG AAGAAGAAAATTTGG Rpal_2336 2520410 - 2522182 + | hypothetical protein Rpal_2338 2522689 - 2522961 + | hypothetical protein Rpal_2339 2524444 - 2522993 - | hypothetical protein TERM 1818 2524731 - 2524719 - H 73 -3.3 -4.67942 | CCGAAGAAATCAAAA CGGTT TCT ATCCG GCTAGGTGGCACCAG Rpal_2340 2524882 - 2525508 + | hypothetical protein Rpal_2341 2525654 - 2528011 + | Ornithine decarboxylase Rpal_2342 2528034 - 2528576 + | GCN5-related N-acetyltransferase TERM 1819 2529020 - 2528997 - g 76 -14.6 -3.1372 | overlap 2528995 GATGCGGTATGAAGA CGCCGAACGC TGCA GCGTTCAGCG TGGAATCGAACCTCC Rpal_2343 2528698 - 2529057 + | hypothetical protein Rpal_2344 2529112 - 2530383 + | outer membrane efflux protein TERM 1820 2530403 - 2530440 + G 75 -11.9 -3.66178 | gap 1, overlap 2530402 2530405 ACCGTTGATGTTGAT CTGCGGTGCCG-CCGCGA TGT TTGCGCTCGGCGCCGCTG TTTCCGCTTACGCGC TERM 1821 2530405 - 2530438 + G 75 -13.1 -3.41222 | gap 1, overlap 2530402 2530403 CGTTGATGTTGATCT GCGGTGCCG-CCGCGA TGT TTGCGCTCGGCGCCGC TGTTTCCGCTTACGC Rpal_2345 2530380 - 2531375 + | efflux transporter, RND family, MFP subunit Rpal_2346 2531405 - 2534620 + | heavy metal efflux pump, CzcA family Rpal_2347 2534617 - 2534985 + | hypothetical protein Rpal_2348 2535315 - 2535046 - | hypothetical protein Rpal_2349 2536288 - 2535389 - | hypothetical protein Rpal_2350 2536429 - 2538723 + | FMN-binding domain protein Rpal_2351 2538742 - 2540679 + | Nitrous-oxide reductase TERM 1822 2541854 - 2541833 - g 73 -10.9 -3.65046 | gap 1, opp_overlap 2541851, overlap 2541836 CTTCGACCTCAACAA CGACGGCATC GCT GATGCCG-CG TATCGGCCGAACGAT Rpal_2352 2540682 - 2542046 + | periplasmic copper-binding Rpal_2353 2542043 - 2542948 + | ABC transporter related TERM 1823 2543106 - 2543133 + G 82 -12.8 -3.96624 | overlap 2543087 GGCGCTCGACGTGGT GATCGTCAGCCT GTCG AGCCTGACGATC TTTCTGCTGCCGCTG Rpal_2354 2542945 - 2543772 + | nitrous oxide metabolic protein TERM 1824 2544062 - 2544112 + G 72 -6.8 -4.2704 | opp_overlap 2544088 2544089 GGACATGGGGCGGGC GCCGAATTGGGATCAGCCCGGT GAAACCA ACTGGGTTGATGCCAAGAAGGC TTTCTTCGTGATCGA Rpal_2355 2543769 - 2544320 + | NosL family protein TERM 1825 2545053 - 2545027 - g 70 -10.9 -3.57144 | gap 1, opp_overlap 2545026 TGGCCGATCCGGAAA CGACGAGTGCCA ACCT CGGCAC-CGTCG ATCTGGTTGACCGCG Rpal_2356 2544333 - 2545331 + | ApbE family lipoprotein Rpal_2357 2545367 - 2545837 + | hypothetical protein Rpal_2358 2545924 - 2546214 + | hypothetical protein TERM 1826 2546233 - 2546279 + G 75 -2.7 -4.72272 | gap 1, opp_overlap 2546248, overlap 2546234 GCGCCAGCGGATTTC TCGGGTCAGC-CAAAAGCCGGC TGTT GCCGGCCTCGGTGCCGTTCCGG TTTTTCGTCGCCGCG TERM 1827 2546263 - 2546248 - g 91 -11.8 -4.18018 | opp_overlap 2546234 2546233 TCGGGTCAGCCAAAA GCCGGC TGTT GCCGGC CTCGGTGCCGTTCCG TERM 1828 2547378 - 2547427 + G 74 -12.7 -3.5774 | gap 1, overlap 2547380 ATCGTGCTCGACAGT GCTCAGCTCGCCGCCGGCGCCG CCGTGAT CGGCGCCGTCGGGGCTCTG-GC TTTCGCCGCTTACCT Rpal_2359 2546211 - 2547488 + | hypothetical protein Rpal_2360 2547508 - 2548017 + | Hemerythrin HHE cation binding domain protein TERM 1829 2548107 - 2548158 + T 73 -11.4 -3.57128 | opp_overlap 2548099, overlap 2548109 GTAACGACGGCGTTG CTGGGCGTTCCGACGGACGCCTCG CGAA CGAGCCGTCCGTCACAACTCACCG TTCTGGTTCGTTAGT Rpal_2361 2548420 - 2548169 - | protein of unknown function DUF378 Rpal_2362 2549385 - 2548525 - | short-chain dehydrogenase/reductase SDR TERM 1830 2549467 - 2549498 + r 72 -7.2 -4.13767 | gap 1, opp_overlap 2549467 GTCAGGTCTGGAACA GCGCGCTGATCACCG TTT CGG-GATCGGCCGGC TTTTCGCATCGGACG Rpal_2363 2549821 - 2549453 - | response regulator receiver protein Rpal_2364 2551719 - 2549818 - | signal transduction histidine kinase TERM 1831 2550966 - 2550992 + g 70 -4.2 -4.44046 | overlap 2550966 2550962 2550967 AGCGGATGTTGGGAG CCGAGCCGTCGC GGC GCGCTGTCTCGA TTTCTTTGACGTCCG Rpal_2365 2552004 - 2551807 - | hypothetical protein Rpal_2366 2552824 - 2552147 - | signal transduction histidine kinase Rpal_2367 2553595 - 2552828 - | putative transcriptional regulator, Crp/Fnr family Rpal_2368 2553883 - 2554005 + | hypothetical protein TERM 1832 2554342 - 2554362 + T 81 -12.5 -3.71917 | overlap 2554343 2554352 2554354 TCGATTGCAAGACGG TGGCCGGGT TCA GCCCGGCCG TTTGCGGTTTGGGCT TERM 1833 2554343 - 2554361 + T 72 -13.8 -2.82668 | overlap 2554342 2554352 2554354 CGATTGCAAGACGGT GGCCGGGT TCA GCCCGGCC GTTTGCGGTTTGGGC Rpal_2370 2555706 - 2554537 - | Alcohol dehydrogenase GroES domain protein Rpal_2371 2556153 - 2557085 + | periplasmic binding protein Rpal_2372 2557871 - 2557122 - | uroporphyrin-III C-methyltransferase Rpal_2373 2559232 - 2557871 - | cobyrinic acid a,c-diamide synthase TERM 1834 2558254 - 2558244 - G 72 -8.2 -4.07568 | overlap 2558245 CGTGTCTCGGCAAAA GCGC CGA GCGC CGCCTTGAACCGCGT Rpal_2374 2559998 - 2559219 - | precorrin-4 C11-methyltransferase Rpal_2375 2560387 - 2559995 - | putative CobE protein Rpal_2376 2561607 - 2560384 - | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit TERM 1835 2561994 - 2562019 + G 70 -6 -4.1822 | opp_overlap 2561984, overlap 2561985 2561992 ATCAAGCCGTCGGCG CGCTCGGCGC TGCGCC GCGACGGGTG TTTCTTGGCATCGGC Rpal_2377 2561639 - 2562388 + | Precorrin-6A reductase Rpal_2378 2563116 - 2562355 - | precorrin-3B C17-methyltransferase TERM 1836 2562670 - 2562644 - G 72 -4.3 -4.4648 | gap 1, opp_overlap 2562644 2562645, overlap 2562645 AGCGCGATCACAAAA TCGGCTTCG-GC CGCC GCGCGCAGCCGC TTCTCGACGGTCTCC Rpal_2379 2563841 - 2563113 - | precorrin-2 C20-methyltransferase Rpal_2380 2564467 - 2563838 - | Precorrin-8X methylmutase Rpal_2381 2565027 - 2564464 - | hypothetical protein Rpal_2382 2566564 - 2565428 - | CitB domain protein Rpal_2383 2567855 - 2566551 - | precorrin 3B synthase CobZ TERM 1837 2569218 - 2569269 + G 75 -13.7 -3.22894 | gap 3, overlap 2569231 2569232 2569263 TGATCGATGGTTTCA TCGCCAGCGCGGCGGCGCTGCTCGCG GTG CGGCTGCAGC-CCGCCGCGC-G-CGA TTACTGCGTGTTCTC Rpal_2384 2568419 - 2569483 + | nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase Rpal_2385 2569480 - 2570250 + | cobalamin-5-phosphate synthase CobS TERM 1838 2570407 - 2570380 - g 71 -14.8 -2.54896 | overlap 2570376 CCCGGATCCAATTCA CGCCGCGCACCA CCAC CGGTCCGCGGCG CGCCCGCTCGCTGAT TERM 1839 2571414 - 2571426 + G 70 -10.5 -3.66844 | CACGCCCATGTCCGC CGCGG CGG CCGCG TTGTTGGCCTGTGCG Rpal_2386 2570334 - 2571908 + | cobyric acid synthase CobQ Rpal_2387 2571940 - 2572704 + | precorrin-6A synthase (deacetylating) Rpal_2388 2572824 - 2573588 + | glutamine amidotransferase class-I Rpal_2389 2575242 - 2573593 - | protein of unknown function DUF894 DitE TERM 1840 2573799 - 2573782 - G 74 -10.5 -3.86822 | GAAGGTCTCGACAAA GCGGCCA GGAT CGGCCGC ATCCTCGAATACGCC TERM 1841 2574249 - 2574215 - G 70 -9.9 -3.64236 | overlap 2574207 2574240 ACCGAAACGTTCAAA CTCGCCAGCACAGCG ATCCA CGAGATGCCGGCGAG CAGACACGCGGCCAC Rpal_2390 2575569 - 2576219 + | isochorismatase hydrolase Rpal_2391 2576244 - 2576534 + | protein of unknown function DUF1427 Rpal_2392 2576531 - 2578411 + | Amidohydrolase 3 Rpal_2393 2578413 - 2578838 + | DoxX family protein Rpal_2394 2578858 - 2579778 + | hypothetical protein Rpal_2395 2579775 - 2581208 + | hypothetical protein TERM 1842 2581264 - 2581222 - T 89 -12.5 -4.21462 | opp_overlap 2581224 2581227, overlap 2581223 AGGCATCAGGCAAAA CGCGACGGCCCGGCGCGAC GATCT GTCGGGCCGGGCCGCTGTT TGGATACTGCGGAGT TERM 1843 2581263 - 2581223 - T 86 -16 -3.12395 | opp_overlap 2581224 2581227, overlap 2581222 GGCATCAGGCAAAAC GCGACGGCCCGGCGCGAC GATCT GTCGGGCCGGGCCGCTGT TTGGATACTGCGGAG TERM 1844 2581224 - 2581262 + T 100 -20.2 -3.68351 | opp_overlap 2581223 2581222, overlap 2581227 GCATCAGGCAAAACG CGACGGCCCGGCGCGACG ATC TGTCGGGCCGGGCCGCTG TTTGGATACTGCGGA TERM 1845 2581227 - 2581259 + T 100 -22.7 -2.65116 | opp_overlap 2581223 2581222, overlap 2581224 TCAGGCAAAACGCGA CGGCCCGGCGCGACG ATC TGTCGGGCCGGGCCG CTGTTTGGATACTGC Rpal_2396 2582297 - 2581281 - | alpha/beta hydrolase fold Rpal_2397 2583054 - 2582338 - | hypothetical protein Rpal_2398 2588344 - 2583206 - | ATP-binding region ATPase domain protein Rpal_2399 2588717 - 2588331 - | response regulator receiver protein Rpal_2400 2589438 - 2588806 - | two component transcriptional regulator, LuxR family Rpal_2401 2589677 - 2590285 + | transcriptional regulator, AraC family Rpal_2402 2592250 - 2590325 - | transcriptional regulator, Fis family TERM 1846 2591347 - 2591393 + g 74 -7.9 -4.26076 | AGTCGTTTTCGAGCT GCAGC-CGCTCGCGCAGGCGG TCGACTT CGGCCAGCGC-AGCGTGCAGC TTTTCGTCGGCCTCG TERM 1847 2591465 - 2591434 - G 70 -11.4 -3.37487 | opp_overlap 2591435 2591437, overlap 2591432 TGACATCGCGAAACA CCACGACGGCGCCG ACCA CGCCGCCGCTGCGG TCGTGGATCGGTGTG TERM 1848 2591833 - 2591789 - G 74 -12.8 -3.54424 | opp_overlap 2591793 TTCGATGTCCTGAAA TACCCGCTCGACGCGCTGCC ATGCA GGCAACCCGTCGCGCATGTA ATCGTCGGCGACGGC TERM 1849 2591972 - 2591950 - G 72 -13.4 -3.18274 | CGTATTCCAATCGAA GCTGCGTGCC ATC GGCATGCAGC GGCGTCAGCGCGTGC TERM 1850 2592349 - 2592372 + H 76 -13.2 -3.41222 | gap 1, overlap 2592348 ATATCGTCGCATCTG GCG-GCCAACC GGT GGTTGGCACGC TCTTTGCGATTAGGA TERM 1851 2592639 - 2592672 + G 81 -7.9 -4.59773 | overlap 2592641 CTTTCTGAAGTCGGT CGGCGCTGCCACGGC ACTC GCCGCGGTGTCGCAG TTTTTCCCCCTGCAG TERM 1852 2592746 - 2592731 - g 70 -10.4 -3.63744 | opp_overlap 2592731, overlap 2592729 GTCCGCTGGAAAAGA CCGACC TCAA GGTCGG TTTCATTCCGATCAC TERM 1853 2592731 - 2592746 + G 77 -10.4 -3.91911 | opp_overlap 2592731 2592729 GTCCGCTGGAAAAGA CCGACC TCAA GGTCGG TTTCATTCCGATCAC Rpal_2403 2592412 - 2593800 + | ABC transporter nitrate-binding protein TERM 1854 2593850 - 2593807 - f 76 -10.8 -3.75153 | gap 1, overlap 2593808 GCCTCGTAACGGAAA GGGGACCGGCGGCGGCATGTT TGG ATCTCTCCGCCGCCGG-CCGC GTCCCCCGAACGATG TERM 1855 2593850 - 2593808 - f 70 -13.2 -2.84878 | overlap 2593807 CCTCGTAACGGAAAG GGGACCGGCGGCGGCATGTT TGG ATCTCTCCGCCGCCGGCCGC GTCCCCCGAACGATG Rpal_2404 2593948 - 2594787 + | nitrate ABC transporter, inner membrane subunit Rpal_2405 2594793 - 2595680 + | nitrate ABC transporter, ATPase subunits C and D Rpal_2406 2595723 - 2596211 + | cyanate lyase Rpal_2407 2596734 - 2596318 - | hypothetical protein Rpal_2408 2597195 - 2596713 - | flavodoxin TERM 1856 2596776 - 2596814 + g 70 -11 -3.54129 | gap 1, overlap 2596811 TGATTGGCCGTCCTC GTCGAGCGCGA-GGCCG ACGAAG CGGCCGTCGCGTTCCGC TTTGGAGGCGGTGTA TERM 1857 2597348 - 2597331 - R 76 -9.1 -4.09739 | gap 1, opp_overlap 2597330 2597328 2597331 TGAACCGGTCCAAAA CCG-CCCG CGT CGGGACGG CTGTTACTTAGAATG Rpal_2409 2598205 - 2597399 - | ABC transporter related Rpal_2410 2599284 - 2598202 - | transport system permease protein TERM 1858 2598941 - 2598917 - G 76 -14.9 -3.10894 | overlap 2598931 AGCAGGACGATCGAA GCGGCCGCACC AAA GGCGCCGCCGC TCGCGACGCCGACCA TERM 1859 2598951 - 2598931 - G 75 -11.8 -3.72695 | overlap 2598917 AGCGGCCGCACCAAA GGCGCCGC CGCTC GCGACGCC GACCAGCGCCGGGTC Rpal_2411 2600252 - 2599281 - | periplasmic binding protein Rpal_2412 2600452 - 2600249 - | hypothetical protein Rpal_2413 2600786 - 2602246 + | Coproporphyrinogen dehydrogenase Rpal_2414 2602234 - 2602905 + | NAD-dependent epimerase/dehydratase TERM 1860 2603059 - 2603028 - f 73 -3.1 -4.72272 | gap 2, opp_overlap 2603033, overlap 2603033 CTCGGTTACCAAAAA TGCAAGCCGTTAGCA GTTG TGCTGACGGC-TG-A TTGCCAGCCAGCCGC TERM 1861 2603056 - 2603033 - f 71 -11 -3.47218 | opp_overlap 2603033, overlap 2603028 TTACCAAAAATGCAA GCCGTTAGCA GTTG TGCTGACGGC TGATTGCCAGCCAGC Rpal_2415 2603123 - 2605462 + | TonB-dependent heme/hemoglobin receptor family protein Rpal_2416 2605540 - 2605872 + | Antibiotic biosynthesis monooxygenase Rpal_2417 2605889 - 2606425 + | protein of unknown function DUF1008 Rpal_2418 2606418 - 2607215 + | tonB-system energizer ExbB Rpal_2419 2607221 - 2607658 + | TonB system transport protein ExbD Rpal_2420 2607655 - 2608512 + | TonB family protein TERM 1862 2608849 - 2608791 - T 74 -5.7 -4.50976 | opp_overlap 2608831 2608833, overlap 2608794 2608795 GCCCAGACCACAAAA CTACCGCCGCGGCTCGCGCGAACTA TGCATGTAG TTGCGCGCACGGGGCTCGGCGGGAG TCGAGCCTCCGATGA Rpal_2421 2609311 - 2609090 - | hypothetical protein Rpal_2422 2610266 - 2609478 - | protein of unknown function DUF81 TERM 1863 2609528 - 2609516 - G 71 -3.3 -4.67982 | opp_overlap 2609518, overlap 2609517 2609518 CCGCAGCGAACAAAA CCGCT GCC AGCGC GATCTGCAGCTTTCG TERM 1864 2611736 - 2611769 + G 75 -2.9 -4.80882 | overlap 2611741 2611743 GCGGCGGGCTCGATC GCTTCGCCGGCGATG CCGT CTTCGTCGGCCCAAC TTTTTCCTATGCGAT Rpal_2423 2610898 - 2611917 + | hypothetical protein Rpal_2424 2612047 - 2613432 + | putative membrane protein of unknown function Rpal_2425 2613437 - 2614228 + | hypothetical protein TERM 1865 2614232 - 2614252 + F 82 -11.1 -4.09739 | GCGAAACCCTAGGCT CCTCGCAGC CGC GCTGCGACG TTTTGGCGGAATTCA Rpal_2426 2614389 - 2614832 + | hypothetical protein Rpal_2427 2617028 - 2614905 - | integral membrane sensor hybrid histidine kinase Rpal_2428 2617249 - 2617563 + | cytochrome c class I TERM 1866 2617723 - 2617689 - g 71 -12.8 -3.34043 | opp_overlap 2617689 2617690, overlap 2617690 CTCACCATTCTACAA TGCGGACCACATCGCG TTT CGCGACGTGATCCGGC GTTTCGTCCAGAATG TERM 1867 2617689 - 2617724 + G 70 -10.4 -3.73224 | gap 1, opp_overlap 2617689 2617690, overlap 2617690 CTCACCATTCTACAA TG-CGGACCACATCGCG TTT CGCGACGTGATCCGGCG TTTCGTCCAGAATGA TERM 1868 2617722 - 2617690 - g 77 -16.3 -2.60212 | opp_overlap 2617689 2617690, overlap 2617689 TCACCATTCTACAAT GCGGACCACATCGCG TTT CGCGACGTGATCCGG CGTTTCGTCCAGAAT Rpal_2429 2617657 - 2618805 + | acyl-CoA dehydrogenase domain protein TERM 1869 2618931 - 2618882 - f 84 -11.3 -4.12554 | gap 1, overlap 2618883 GAAAGATAACAACAA GCCGAGATTCCGGGGTCGCCCGCC TGC GGCGTGCG-CCCCAGAATGACGAG GGGAAGAAACCAGAT TERM 1870 2618930 - 2618883 - f 78 -14.8 -3.05906 | gap 1, overlap 2618882 AAAGATAACAACAAG CCGAGATTCCGGGGTCGCCCGCC TGC GGCGTGCG-CCCCAGAATGACGA GGGGAAGAAACCAGA Rpal_2430 2618945 - 2620099 + | acyl-CoA dehydrogenase domain protein Rpal_2431 2620339 - 2620989 + | Glutathione S-transferase domain Rpal_2432 2621154 - 2621978 + | transcriptional regulator, AraC family Rpal_2433 2622099 - 2622965 + | protein of unknown function DUF849 TERM 1871 2623592 - 2623607 + G 70 -10.4 -3.75169 | opp_overlap 2623571, overlap 2623577 CGGCAAGGCCGCCGA CACCGG ATTG CCGGTG TTTGATCAGCTGATC Rpal_2434 2623131 - 2624735 + | AMP-dependent synthetase and ligase TERM 1872 2625142 - 2625121 - g 71 -12.3 -3.29144 | gap 1 CGAGCGCTTCCACAA GCGCGGTCAG CTG CTG-CCGCGC GAGCGCGTCGCGCTG Rpal_2435 2624975 - 2626597 + | Propionyl-CoA carboxylase TERM 1873 2627177 - 2627142 - g 72 -14.6 -2.70932 | gap 1, opp_overlap 2627145 GCGGCTGGTGAAGGA CGC-CGCCGCGCTGCCC GAC GCGCTGCGCAGCGCGCG TTCGGAGGCGCAAAG Rpal_2436 2626609 - 2628576 + | Carbamoyl-phosphate synthase L chain ATP-binding TERM 1874 2628626 - 2628657 + F 78 -14.5 -3.05384 | opp_overlap 2628626, overlap 2628630 GAGCGAAGCGAACAA GCAATCCAGCGCC ATGCAC GCCGCTGGATTGC TTCGCTGCGCCCGCA TERM 1875 2628657 - 2628626 - f 90 -15.2 -3.73783 | opp_overlap 2628626 2628630 GAGCGAAGCGAACAA GCAATCCAGCGCCA TGCA CGCCGCTGGATTGC TTCGCTGCGCCCGCA Rpal_2437 2628698 - 2629477 + | Enoyl-CoA hydratase/isomerase TERM 1876 2629508 - 2629561 + F 83 -15.9 -3.14132 | overlap 2629486 2629512 2629517 2629542 ATTCCGGGGCGCGCG GAGCGCGAACCCGGAATCCCGAGGT TGTG GCGGCGAGATTCCGGGTTCGCTCAC TTCGTGAGCGCCCCG TERM 1877 2629512 - 2629557 + F 86 -18.3 -2.56596 | overlap 2629486 2629508 2629517 2629542 CGGGGCGCGCGGAGC GCGAACCCGGAATCCCGAGGT TGTG GCGGCGAGATTCCGGGTTCGC TCACTTCGTGAGCGC Rpal_2438 2629656 - 2631194 + | AMP-dependent synthetase and ligase Rpal_2439 2631298 - 2632734 + | hypothetical protein Rpal_2440 2634098 - 2632830 - | beta-lactamase TERM 1878 2633868 - 2633882 + g 75 -11.4 -3.75629 | opp_overlap 2633850 GCGGAAGATGGTGTC GTCGCG CAC CGCGAC TTTGCGTTCGACATC TERM 1879 2634679 - 2634658 - g 70 -11.5 -3.40403 | overlap 2634624 CGTCGGCGAGCACAA GCCGACGCC GCAA GGCGCCGAC ATCTCCGAAGGCGTC TERM 1880 2634826 - 2634812 - g 71 -9.2 -3.88291 | TACGATTCTCAGAAA CCCGGC TAT GCCGAG CAGGGCCCGTCGCTG TERM 1881 2634945 - 2634984 + G 70 -4 -4.46212 | gap 1 TCGGTGACCTGATCC TGGCGGCCCGCCGGCACCC GAT GCG-GCCGGCGCACGTCCA TTTTCTGGTCAGCGC Rpal_2441 2634329 - 2635234 + | intradiol ring-cleavage dioxygenase TERM 1882 2635888 - 2635930 + G 100 -19.1 -4.56597 | gap 1, opp_overlap 2635887 GCTGCTGCAGAGCAT CGCCGGCGCC-CATGGCGCG ACGC CGCGGCAGGTGGCGCTGGCG TTTTTGACCCGGCGG Rpal_2442 2635253 - 2636098 + | aldo/keto reductase TERM 1883 2636333 - 2636389 + G 95 -17.3 -3.90318 | gap 1, opp_overlap 2636335 GTGCGCCGGCTCACA CACCGTCATGCCGACCATCCGCTGCG CGGCAT CGC-GCTGATCGTCGGCTCGACGGTG TTTCTCGCCTGCTCG TERM 1884 2636387 - 2636335 - g 79 -16.3 -2.87132 | gap 1, opp_overlap 2636333 GCGCCGGCTCACACA CCGTCATGCCGACCATCCGCTGCG CGGCAT CGC-GCTGATCGTCGGCTCGACGG TGTTTCTCGCCTGCT Rpal_2443 2636288 - 2637232 + | protein of unknown function DUF6 transmembrane Rpal_2444 2637435 - 2639456 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpal_2445 2639703 - 2641133 + | Aldehyde Dehydrogenase TERM 1885 2641138 - 2641182 + F 88 -16.4 -3.29096 | gap 1, overlap 2641139 ACGCCGCGTAACTGC AACCGCG-CGATGCCGGGGCC GTCC GGTTCCGGCATCGCCGCGGGG TTAATGATTAATACG TERM 1886 2641139 - 2641181 + F 90 -19.9 -2.57136 | gap 1, overlap 2641138 CGCCGCGTAACTGCA ACCGCG-CGATGCCGGGGCC GTCC GGTTCCGGCATCGCCGCGGG GTTAATGATTAATAC Rpal_2446 2641242 - 2642456 + | acyltransferase 3 Rpal_2447 2642562 - 2642717 + | hypothetical protein Rpal_2448 2642783 - 2644489 + | Dihydroxy-acid dehydratase Rpal_2449 2644772 - 2644494 - | hypothetical protein Rpal_2450 2645171 - 2646367 + | hypothetical protein Rpal_2451 2646503 - 2646832 + | hypothetical protein TERM 1887 2646863 - 2646886 + T 81 -16.8 -2.80074 | opp_overlap 2646857 2646865, overlap 2646860 2646859 2646865 CCTCCGAAATGCGAA GAGGGCGGAT GGAG ATCCGCCCTC TGATGTTGTGGCGGA TERM 1888 2646884 - 2646865 - T 76 -13.6 -3.12668 | opp_overlap 2646865 2646863 2646860 2646859, overlap 2646857 TCCGAAATGCGAAGA GGGCGGAT GGAG ATCCGCCC TCTGATGTTGTGGCG TERM 1889 2646865 - 2646884 + T 74 -13.6 -2.94726 | opp_overlap 2646857 2646865, overlap 2646863 2646860 2646859 TCCGAAATGCGAAGA GGGCGGAT GGAG ATCCGCCC TCTGATGTTGTGGCG Rpal_2452 2647195 - 2646941 - | hypothetical protein TERM 1890 2647364 - 2647341 - R 79 -13.8 -3.53012 | opp_overlap 2647342, overlap 2647342 CCGTGCGGCGGGAAA GGCTCCGGCG CCGC CGCCGGAGCT TTGAGCGCAGCCGCG TERM 1891 2647363 - 2647342 - R 84 -17.3 -2.71712 | opp_overlap 2647342, overlap 2647341 CGTGCGGCGGGAAAG GCTCCGGCG CCGC CGCCGGAGC TTTGAGCGCAGCCGC TERM 1892 2647342 - 2647363 + r 93 -17.3 -3.53012 | opp_overlap 2647341 2647342 CGTGCGGCGGGAAAG GCTCCGGCG CCGC CGCCGGAGC TTTGAGCGCAGCCGC Rpal_2453 2648130 - 2647381 - | short-chain dehydrogenase/reductase SDR Rpal_2454 2648243 - 2648557 + | transcriptional regulator, ArsR family TERM 1893 2649029 - 2649064 + F 76 -9 -4.09685 | gap 1 CGAACGACACATTGG GCGGTCGAGCGAAC-GC TTA GCAGTTCGCTTCAACGC TTTTCCGACATCCGG TERM 1894 2649163 - 2649182 + F 78 -15 -3.01712 | CCTTCTGTTTGCTGA CGGCGTCG CCCA CGACGCCG TGTTGAGGCCGCAGC TERM 1895 2650864 - 2650885 + G 70 -10.1 -3.69702 | CACCTACGTCCTGAC CGGCGACAC CAGC GTGTCGGCG TTCTATTCGCTGATC Rpal_2455 2649251 - 2652010 + | outer membrane autotransporter barrel domain protein Rpal_2456 2652754 - 2652068 - | yecA family protein TERM 1896 2652865 - 2652890 + r 84 -16.1 -3.09015 | CGAGATCGTCATTCC GGGACGCGAGC GAAA GCTCGCGGCCC TTGAATCCATATCCG TERM 1897 2653039 - 2653066 + r 73 -11.2 -3.59202 | opp_overlap 2653043, overlap 2653043 TGCTTGCGCCAACAA AAAAGCCCGGCG TTTC CGCCGGGCTTCG TTGTCTGTGGCGATG TERM 1898 2653043 - 2653062 + r 89 -16.4 -3.52316 | opp_overlap 2653043, overlap 2653039 TGCGCCAACAAAAAA GCCCGGCG TTTC CGCCGGGC TTCGTTGTCTGTGGC TERM 1899 2653062 - 2653043 - R 100 -16.4 -5.4505 | opp_overlap 2653039 2653043 TGCGCCAACAAAAAA GCCCGGCG TTTC CGCCGGGC TTCGTTGTCTGTGGC Rpal_2457 2654729 - 2653092 - | chaperonin GroEL Rpal_2458 2655209 - 2654895 - | chaperonin Cpn10 TERM 1900 2655096 - 2655108 + g 83 -9.1 -4.41494 | overlap 2655092 GACGGCGACGATCTC GCCCT GCG AGGGC TTTTCCTTGGCCGTG Rpal_2459 2655652 - 2655936 + | Usg family protein Rpal_2460 2657762 - 2656077 - | hypothetical protein Rpal_2461 2659259 - 2658009 - | Na+ dependent nucleoside transporter domain protein TERM 1901 2659654 - 2659676 + G 76 -14.8 -3.15861 | GCCTAGCGAGCGCGA CTGCGCCGGC CGA GCCGGGGCAG TTGCTCAACATGCTG Rpal_2462 2659440 - 2660540 + | RuBisCO-like protein Rpal_2463 2660530 - 2661027 + | Cupin 2 conserved barrel domain protein Rpal_2464 2661454 - 2661035 - | hypothetical protein Rpal_2465 2661549 - 2662337 + | hypothetical protein Rpal_2466 2663115 - 2662357 - | short-chain dehydrogenase/reductase SDR TERM 1902 2662818 - 2662849 + g 74 -12.2 -3.61398 | gap 1 CCAGCGGCAGATCCT CGAACGGCACCGGCG GCG CGCCGATGCCGG-CG TTGTTGAACAGCACG Rpal_2467 2663648 - 2663148 - | GCN5-related N-acetyltransferase TERM 1903 2663371 - 2663336 - G 74 -15.4 -2.60212 | opp_overlap 2663336, overlap 2663335 TGATCACCGCAGAAG CCGCGCCGCCGCCG CGCGCTTC CGGCAGCAGCGCGA TGTCGTGCAGATAAT Rpal_2468 2664413 - 2663667 - | 20S proteasome A and B subunits TERM 1904 2664479 - 2664525 + r 100 -28.4 -4.21773 | opp_overlap 2664482 2664484 2664511 ATCGGCTGCGGGACA CTAGAGCATTTCCGGTTCTGAT AGA ATCAGAACCGGAAATGCTCCAG TTGTTTGTCTTGACG TERM 1905 2664522 - 2664482 - R 100 -28.7 -2.62184 | opp_overlap 2664479, overlap 2664484 2664511 GGCTGCGGGACACTA GAGCATTTCCGGTTCTGAT AGA ATCAGAACCGGAAATGCTC CAGTTGTTTGTCTTG TERM 1906 2664520 - 2664484 - R 100 -25.5 -2.85351 | opp_overlap 2664479, overlap 2664482 2664511 CTGCGGGACACTAGA GCATTTCCGGTTCTGAT AGA ATCAGAACCGGAAATGC TCCAGTTGTTTGTCT Rpal_2469 2665454 - 2664627 - | transglutaminase domain protein TERM 1907 2664921 - 2664897 - G 86 -17.1 -3.25823 | overlap 2664882 GTGCCCGGACACGAA CCGGGCCGGCA CGC CACCGGCCCGG GCGCAGGCGATGAAC Rpal_2470 2666448 - 2665504 - | protein of unknown function DUF403 Rpal_2471 2668013 - 2666595 - | protein of unknown function DUF404 TERM 1908 2667270 - 2667248 - G 72 -13.5 -3.13403 | overlap 2667246 TGGTGCGCATGAACA CCTCGTCGT TCTTG ACGACGAGG TCCCGGCCTTCGACC TERM 1909 2667456 - 2667498 + g 72 -8.4 -4.10657 | gap 1, opp_overlap 2667467 CGGCGCAATGCGGTG CCGCGCGAACA-GATCCGG AAACAG CCGCATCATGATCTCGCGG TTTTCCAGCATATAC Rpal_2472 2668237 - 2668974 + | molybdopterin binding domain TERM 1910 2669052 - 2669018 - f 100 -13.7 -4.26903 | opp_overlap 2669021 GGGAGCGGAGCAAAA CAATCCAGAAGCACG TACAC CGTGGCTCTGGATTG CCTTGCGGAGCCTGT Rpal_2473 2669128 - 2669649 + | Xanthine phosphoribosyltransferase TERM 1911 2669702 - 2669734 + F 84 -16.4 -3.06183 | gap 1 GACACGCGCCGCAGC TTCG-CCTCTCCCCG CGCG CGGGGAGAGGTCGGA TTGCGTAGCAATCCG TERM 1912 2670217 - 2670231 + G 71 -12.8 -3.27923 | GGCGACCGCGCTCGC GGCCGG GCA CCGGCC TTGCTACTATTGCCG Rpal_2474 2669978 - 2670652 + | hypothetical protein Rpal_2475 2671869 - 2670847 - | Methionine synthase vitamin-B12 independent TERM 1913 2672198 - 2672225 + G 77 -15.6 -3.01712 | gap 1, opp_overlap 2672176 2672175, overlap 2672210 ATCGTCGATCATGCG CCGATCGGCGGCG GTG CGCCGCTG-TCGG TGTTCGAGAGCGGGG TERM 1914 2672291 - 2672267 - g 70 -4.2 -4.57073 | gap 1, overlap 2672268 2672269 TATCTGGCGGAAAAA TC-CGGGCAGC TGAT GCCGACCGAGA CGAGGGCCCGGTTCG Rpal_2476 2672021 - 2672740 + | Glutathione S-transferase domain TERM 1915 2673374 - 2673414 + G 74 -12.6 -3.59979 | gap 1, opp_overlap 2673399, overlap 2673402 ATTTGTCGGATTGGA CACGCTCGGCGG-GCCTTG CGAT CAAGATGCCGCCCAGCGTG TTTCCGGTGAACAGC Rpal_2477 2673160 - 2673780 + | DSBA oxidoreductase TERM 1916 2674666 - 2674705 + G 71 -9.2 -3.84246 | overlap 2674651 2674647 2674694 TGCGCCCCAACGTGT CGCATCGCTTGCCTCTGT CGCA ATGGGCGCCGGCGATGCG TTTGCTGATTGACCG Rpal_2478 2673780 - 2674754 + | Alcohol dehydrogenase zinc-binding domain protein TERM 1917 2674771 - 2674803 + F 100 -19.9 -3.59262 | opp_overlap 2674757 2674762 ACGGAATTTCACGCA CCCGCGGCGAGCGAA GAT TTCGCTTGGCGCGGG TTTCGCGATGTGGAA Rpal_2479 2674846 - 2675313 + | MaoC domain protein dehydratase Rpal_2480 2675332 - 2676249 + | short-chain dehydrogenase/reductase SDR TERM 1918 2676336 - 2676281 - f 95 -19.9 -3.31144 | opp_overlap 2676285, overlap 2676284 GGTCGAGTCGCAGAA CAACTCCG-GATTCCGGGTTCGCTCGC TGGC GCGAGCGC-CCCGGAATGACGGAGCTG GGACAAGGTCTCTCC TERM 1919 2676333 - 2676284 - f 100 -18 -3.79906 | opp_overlap 2676285, overlap 2676281 CGAGTCGCAGAACAA CTCCG-GATTCCGGGTTCGCTCGC TGGC GCGAGCGC-CCCGGAATGACGGAG CTGGGACAAGGTCTC TERM 1920 2676360 - 2676391 + F 93 -19.6 -2.91912 | gap 1, overlap 2676386 TCTCTCCACGATTCA TTCCGGGT-CACGCC GAA GGCGTGAACCCGGAA TCTCTGCATCGATCC Rpal_2481 2676453 - 2677688 + | HI0933 family protein Rpal_2482 2678006 - 2677695 - | hypothetical protein Rpal_2483 2678674 - 2678018 - | transcriptional regulator, TetR family Rpal_2484 2680595 - 2678778 - | ABC transporter related Rpal_2485 2681082 - 2680606 - | protein of unknown function DUF188 Rpal_2486 2681186 - 2681986 + | hypothetical protein TERM 1921 2682495 - 2682468 - g 74 -5.6 -4.51174 | gap 1, overlap 2682469 GTACGAGAATGAAAA CGTCGACATGATC GTC GATC-TGCCGACC TCGGCCACCGCGCTC Rpal_2487 2682181 - 2683395 + | Extracellular ligand-binding receptor TERM 1922 2683471 - 2683438 - T 70 -11.7 -3.21924 | gap 1, opp_overlap 2683438 2683442, overlap 2683436 GTACTCCGCACAACA GACGTCGTCGCCGGGC TCG ACCCGGCGACC-CATC TTCTTCGTAGAATGA TERM 1923 2683561 - 2683578 + T 71 -5.5 -4.30576 | overlap 2683516 2683554 CGGCCGCGCAGGCGG GTCAAGC CCGC GCATGAC TTTTCGTAGTAAGGC Rpal_2488 2686004 - 2683629 - | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding TERM 1924 2685073 - 2685027 - G 77 -5.7 -4.59773 | gap 2, opp_overlap 2685040, overlap 2685028 GCGGATCGCCAAAAA GCGTCCGCCGGCATCCAGCGCCA GTT CGGCGC-GGAT-CTGCTGGCCGC GGCCCTGGCTGTCAG TERM 1925 2686061 - 2686047 - H 86 -8.5 -4.62069 | opp_overlap 2686046 2686047 GCGGGACGGGAAAAA GCCGC GTGGG GCGGC GTTTCTGCGCGGGGG Rpal_2489 2686246 - 2687313 + | Ppx/GppA phosphatase Rpal_2490 2687915 - 2687340 - | hypothetical protein TERM 1926 2688036 - 2688056 + H 72 -4.5 -4.56775 | overlap 2687997 CGTTCCGACGGCCGG CCGGCGCCG GTT CCGCACTGG TTTTTCCGGGCCCGT Rpal_2491 2688113 - 2688826 + | ribosomal RNA methyltransferase RrmJ/FtsJ Rpal_2492 2688989 - 2689168 + | hypothetical protein Rpal_2493 2690660 - 2689185 - | major facilitator superfamily MFS_1 Rpal_2494 2690852 - 2691100 + | putative exported protein of unknown function TERM 1927 2691282 - 2691306 + F 90 -13.5 -3.97444 | GAATGCCTGGGGAGC GGGGCGGGGCT GTC GGCCTTGCCCC TTTGATTCGTCATAT TERM 1928 2691973 - 2691954 - g 70 -6.4 -4.28994 | gap 1 GATGACGCACGAAAA CCTCGTCAC CGT GCG-CGAGG GCGTCAGCCAGGGCG Rpal_2495 2691454 - 2692950 + | inosine-5'-monophosphate dehydrogenase TERM 1929 2692941 - 2692925 - f 70 -10.1 -3.56092 | CCATCACCCGCGAAA GCCCGAA CTA TCCGGGC GGGGTGTGAGGCGTC Rpal_2496 2693248 - 2694273 + | Alcohol dehydrogenase zinc-binding domain protein TERM 1930 2694275 - 2694331 + F 71 -10.8 -3.40403 | gap 2, overlap 2694280 2694283 CGGAGCGCGCCTGAT CCCAAGCGCCGCA--GCGGAGCCCCGGC GTG GCCGGGACTCTGCGTTGCGGTGGTTCGA TTGTCATCGGCGGGG TERM 1931 2694280 - 2694326 + F 76 -13.7 -3.25072 | gap 2, overlap 2694275 2694283 CGCGCCTGATCCCAA GCGCCGCA--GCGGAGCCCCGGC GTG GCCGGGACTCTGCGTTGCGGTGG TTCGATTGTCATCGG TERM 1932 2694283 - 2694323 + F 81 -16.2 -2.80779 | gap 2, overlap 2694280 2694275 GCCTGATCCCAAGCG CCGCA--GCGGAGCCCCGGC GTG GCCGGGACTCTGCGTTGCGG TGGTTCGATTGTCAT TERM 1933 2695710 - 2695734 + G 75 -3.4 -4.72986 | gap 1, overlap 2695721 AGGCCTGCTGATGAC CCCG-CGCCGC ACCG GCACCGACGGG TTTTTCGTCAGCGTG Rpal_2497 2694466 - 2695767 + | Fmu (Sun) domain protein TERM 1934 2695975 - 2696030 + F 76 -5.9 -4.62471 | gap 2, opp_overlap 2695989 2695990 GGGGAGAGGTGAGGA CGGCG-CGGGGAGAAGCGC-GCTGACG CATG CGGCGGTTGCGCCGGTCCCCATCGCCG TTTTTCCCCGTTGCG Rpal_2498 2696001 - 2697698 + | GMP synthase, large subunit Rpal_2499 2697845 - 2699236 + | hypothetical protein Rpal_2501 2700620 - 2699712 - | hypothetical protein TERM 1935 2700417 - 2700437 + g 70 -11.9 -3.38046 | overlap 2700415 GTCAGCAACGCCGAG GATGACGCG CAA TGCGTCATC TGTTTCGAATAGGGG Rpal_2502 2702410 - 2701196 - | hypothetical protein TERM 1936 2701606 - 2701592 - G 77 -12.8 -3.68351 | CCGCGACGACGCAAA GCGCCC CAT GGGCGC GGCTGTGACATCAGC Rpal_2503 2703029 - 2702700 - | hypothetical protein Rpal_2504 2704553 - 2703357 - | sodium/glutamate symporter TERM 1937 2704031 - 2704014 - G 73 -14.1 -3.21218 | ACGCTTCATCAGGAA GGCGGCC ACGG GGCCGCC GATCATGCAGGCCGC Rpal_2505 2705159 - 2704731 - | PilT protein domain protein Rpal_2506 2705458 - 2705159 - | hypothetical protein TERM 1938 2705236 - 2705255 + g 71 -3.4 -4.57569 | overlap 2705233 2705240 AGGGCGAGCGCCGGA GCGCGGCA ACGA TGCCTCCC TTTTTCGGCGGCTCG Rpal_2507 2706615 - 2705650 - | Helix-turn-helix type 11 domain protein TERM 1939 2706670 - 2706642 - H 88 -16.9 -3.08464 | GCATGATGGATTGAA CCATACCTGACAC AGG ATGTCAGGTATGG GCTGCTAGGACGGTG Rpal_2508 2706714 - 2707358 + | Glutathione S-transferase domain TERM 1940 2707493 - 2707468 - f 71 -13.9 -2.68434 | opp_overlap 2707487 2707488, overlap 2707465 GCCGACATCAGACCA CGCGGCGCCGC TGAT GTGGCGCCGCA ATCCGCTGCGGCTGT TERM 1941 2707529 - 2707518 - f 70 -7.2 -4.07568 | opp_overlap 2707518 2707520 2707525 GGCTGTTTGCGAAAA CGGC CGTC GCCG GGATGGCACGTGCGT Rpal_2509 2707587 - 2708030 + | hypothetical protein Rpal_2510 2708105 - 2708665 + | flavin reductase domain protein FMN-binding TERM 1942 2708663 - 2708695 + T 71 -9 -3.74693 | opp_overlap 2708679 2708680 CGGCCGGGGATGCTG TGAGCGGACGCCGA AACGA TCGGCGCCCGCAGA TTTGATCGCGTGCCC Rpal_2511 2710515 - 2708713 - | putative monooxygenase protein TERM 1943 2710556 - 2710573 + r 72 -4 -4.60487 | overlap 2710556 TTGACAGCATTGTTG CGCCGC ATTTGG GCGTCG TTTTTCGCGATGATA Rpal_2512 2711674 - 2710703 - | hypothetical protein Rpal_2513 2713266 - 2711788 - | Pyruvate kinase Rpal_2514 2713450 - 2713797 + | arsenate reductase and related Rpal_2515 2713836 - 2714012 + | hypothetical protein Rpal_2516 2713993 - 2714640 + | hypothetical protein TERM 1944 2714762 - 2714727 - f 74 -9.7 -3.86015 | gap 3, overlap 2714729 TAGTCGGGCCAGAAA GACGG-GC-CGG-GCGCC AAC GGCGCTCCGAGCACCGGC TCCAAAAAAGAAGAC TERM 1945 2714760 - 2714729 - f 71 -10.9 -3.51934 | gap 3, overlap 2714727 GTCGGGCCAGAAAGA CGG-GC-CGG-GCGCC AAC GGCGCTCCGAGCACCG GCTCCAAAAAAGAAG TERM 1946 2714790 - 2714772 - f 81 -3.8 -5.00884 | overlap 2714775 2714777 2714780 ACCGGCTCCAAAAAA GAAGACAT CGG ACGTCTGC GCCGGCACCGCCTGC TERM 1947 2714787 - 2714775 - f 72 -4.1 -4.61482 | overlap 2714772 2714777 2714780 GGCTCCAAAAAAGAA GACAT CGG ACGTC TGCGCCGGCACCGCC Rpal_2517 2714811 - 2715581 + | ABC transporter related Rpal_2518 2715574 - 2716320 + | ABC transporter related Rpal_2519 2716359 - 2717234 + | inner-membrane translocator TERM 1948 2717504 - 2717547 + G 80 -13.8 -3.64103 | gap 1, overlap 2717505 CGCTGAAGGTGTGGG GGCTGCCGCCGGAACTGGCGA TCA TCGTCGGTACCG-CGGCGGCG TTTGCGCTCTCGGTG TERM 1949 2717505 - 2717546 + G 80 -17.3 -2.7814 | gap 1, overlap 2717504 GCTGAAGGTGTGGGG GCTGCCGCCGGAACTGGCGA TCA TCGTCGGTACCG-CGGCGGC GTTTGCGCTCTCGGT Rpal_2520 2717236 - 2718207 + | inner-membrane translocator TERM 1950 2718254 - 2718232 - T 79 -16.2 -2.52676 | GAGGGGCTGAAGGGA GGCCGCGCCG CCA CGGCGCTGCC TCCACCCGCACAGAC TERM 1951 2718331 - 2718292 - T 100 -17.2 -4.37092 | gap 1, opp_overlap 2718298, overlap 2718295 2718298 AGCGTTGTCAGAAAA CA-AGAACCGCCGCGTGGC TGA GCCGCGCGGCGGTTTTCTG TTTTGGTAGGTCTGA TERM 1952 2718327 - 2718295 - T 100 -19.1 -4.30995 | opp_overlap 2718298, overlap 2718292 2718298 GTTGTCAGAAAACAA GAACCGCCGCGTGGC TGA GCCGCGCGGCGGTTT TCTGTTTTGGTAGGT TERM 1953 2718324 - 2718298 - T 100 -20.8 -4.26938 | opp_overlap 2718298, overlap 2718295 2718292 GTCAGAAAACAAGAA CCGCCGCGTGGC TGA GCCGCGCGGCGG TTTTCTGTTTTGGTA TERM 1954 2718298 - 2718324 + T 100 -23 -4.91977 | opp_overlap 2718298 2718295 2718292 GTCAGAAAACAAGAA CCGCCGCGTGGC TGA GCCGCGCGGCGG TTTTCTGTTTTGGTA Rpal_2521 2720970 - 2718358 - | hypothetical protein TERM 1955 2718731 - 2718780 + g 75 -14.1 -3.28712 | opp_overlap 2718746 2718747 GGAGTGGAGGTCGCC GAGGCCGCGACAGAAGCCGTGGC CGTG GCCGCGGGTTCGGTCGCGACAGC TTCTGAAACCACGGG TERM 1956 2720959 - 2720979 + g 70 -8.2 -3.9941 | CATGGCCGCCCAGTT CTGCGGTG ACATG CGCCGCGG TTTGGTTGTGACAGG Rpal_2522 2721547 - 2722191 + | protein of unknown function DUF47 Rpal_2523 2722206 - 2723222 + | phosphate transporter Rpal_2524 2723551 - 2723240 - | putative plasmid maintenance system antidote protein, XRE family Rpal_2525 2723869 - 2723594 - | plasmid maintenance system killer Rpal_2526 2724272 - 2723958 - | small multidrug resistance protein Rpal_2527 2724503 - 2726128 + | peptide chain release factor 3 TERM 1957 2726367 - 2726345 - f 75 -13.4 -3.01791 | overlap 2726356 2726357 2726360 AGCTTTGCCCGAAGA GCCGCCCC AAAGTGA GGGGCGGC GGCGCGCCGCAAGAC TERM 1958 2728966 - 2728938 - g 76 -6.5 -4.4767 | CGATCGACGAGAAAA CGCTGGGGCCGGA GCA TCCATCCCTCGCG ACGACGCTTGCCAAC TERM 1959 2729344 - 2729316 - g 76 -6.5 -4.4767 | CGATCTACGAGAAAA CGCTGGGGCCGGA GCA TCCATCCCTCGCG ACGACGCTTGCCAAC Rpal_2528 2727164 - 2730139 + | Tetratricopeptide TPR_2 repeat protein Rpal_2529 2730463 - 2730323 - | hypothetical protein Rpal_2530 2732286 - 2730460 - | TPR repeat-containing protein Rpal_2531 2733017 - 2732559 - | hypothetical protein Rpal_2532 2733298 - 2734626 + | tetratricopeptide TPR_2 Rpal_2533 2734638 - 2736359 + | hypothetical protein Rpal_2534 2736495 - 2738789 + | adenylate/guanylate cyclase with Chase sensor Rpal_2535 2740222 - 2738804 - | multi-sensor signal transduction histidine kinase TERM 1960 2740045 - 2740013 - G 70 -8.3 -3.96327 | ACCTGTCAGCAGAAA GCCGCGCTCGCTG GTCTCGG CTTCGAGCACGGC CTGCTGGATCGCGGA Rpal_2536 2741012 - 2740416 - | hypothetical protein Rpal_2537 2741232 - 2741927 + | transcriptional regulator, TetR family TERM 1961 2742294 - 2742345 + F 81 -7.9 -4.4078 | overlap 2742297 2742300 CCGCCACCGTCGAGG GGCCACGCGCGACCGATCACCTG CCGCCC CATGTGATCGGTCGCGCTTCTTG TTTTCGTTGCGGCGG TERM 1962 2742297 - 2742342 + F 100 -16.2 -4.32402 | overlap 2742294 2742300 CCACCGTCGAGGGGC CACGCGCGACCGATCACCTG CCGCCC CATGTGATCGGTCGCGCTTC TTGTTTTCGTTGCGG TERM 1963 2742300 - 2742339 + F 100 -22.3 -4.26559 | overlap 2742297 2742294 CCGTCGAGGGGCCAC GCGCGACCGATCACCTG CCGCCC CATGTGATCGGTCGCGC TTCTTGTTTTCGTTG Rpal_2538 2742400 - 2743056 + | hypothetical protein Rpal_2539 2743053 - 2743529 + | hypothetical protein TERM 1964 2743772 - 2743806 + F 70 -10 -3.60792 | AGCTTACCGCCTGCA CGTCCGAATGGGCG AGGGCGA CGTCCATCTGGACG TTTGGCGGTTCAACG TERM 1965 2744679 - 2744635 - g 79 -16.6 -2.93991 | gap 1, overlap 2744630 2744672 2744674 CCGAAGGCAACTACA CGATCGGCCTCGATCAGGACC TGAC GGCCCTGACCAAGACC-ATCG ATGCGATGAACAACA Rpal_2540 2743908 - 2746586 + | protein of unknown function DUF1522 TERM 1966 2746630 - 2746593 - f 93 -16.9 -3.50853 | opp_overlap 2746594 2746597, overlap 2746594 CTGCGCTAACGACAA CGAACGGGCCGGCGGCG GAAA CGTCGCCGGCCTGTTCT TCTTCTAAATCCAGG TERM 1967 2746629 - 2746594 - f 91 -20.4 -2.70298 | opp_overlap 2746594 2746597, overlap 2746593 TGCGCTAACGACAAC GAACGGGCCGGCGGCG GAAA CGTCGCCGGCCTGTTC TTCTTCTAAATCCAG TERM 1968 2746594 - 2746629 + F 100 -24.8 -3.8211 | opp_overlap 2746593 2746594, overlap 2746597 TGCGCTAACGACAAC GAACGGGCCGGCGGCG GAAA CGTCGCCGGCCTGTTC TTCTTCTAAATCCAG TERM 1969 2746597 - 2746626 + F 100 -20.7 -4.03888 | opp_overlap 2746594 2746593, overlap 2746594 GCTAACGACAACGAA CGGGCCGGCGGCG GAAA CGTCGCCGGCCTG TTCTTCTTCTAAATC Rpal_2541 2746655 - 2747209 + | hypothetical protein Rpal_2542 2747338 - 2748084 + | transcriptional regulator, LuxR family Rpal_2543 2748358 - 2748963 + | transcriptional regulator, LuxR family Rpal_2544 2749986 - 2748994 - | transcriptional regulator, AraC family TERM 1970 2749084 - 2749114 + g 76 -6.1 -4.48987 | gap 2 GCTGGGTTCGGCGAA GCCGAGATCGGCCGC GAT GTCGCCGA-C-CGGC TTTTCGTTCTCGGCG Rpal_2545 2750140 - 2751831 + | AMP-dependent synthetase and ligase TERM 1971 2751964 - 2752011 + G 83 -14.1 -3.85698 | opp_overlap 2751946 2751990 2751993 GGCCTCGATCTCAAC GCCGAGGCTGGCGCCAAGCTC GAACAG GAGCTCGGTGCGAGCTTCCGC TTTCTCGCCACCGAC Rpal_2546 2751850 - 2752617 + | short-chain dehydrogenase/reductase SDR TERM 1972 2752606 - 2752627 + F 89 -12.9 -4.16301 | overlap 2752607 GGTGCACTGCGGATG GCGCCGCGC TGAG GCGCGGCGG TTTCTCTATCGTCTC TERM 1973 2752607 - 2752626 + F 84 -16.4 -3.09058 | overlap 2752606 GTGCACTGCGGATGG CGCCGCGC TGAG GCGCGGCG GTTTCTCTATCGTCT Rpal_2547 2752676 - 2753863 + | acetyl-CoA acetyltransferase TERM 1974 2753923 - 2753972 + G 72 -11.4 -3.53012 | gap 3, overlap 2753924 CCGCCCGCGACTTCG CGCGTGAGCGGC-TCGC-C-CCGAC TGC GGCGGCGCGCGATGCCGCGCACGCC TTTCCGCGCGCCGAA TERM 1975 2753924 - 2753971 + G 72 -14.9 -2.71712 | gap 3, overlap 2753923 CGCCCGCGACTTCGC GCGTGAGCGGC-TCGC-C-CCGAC TGC GGCGGCGCGCGATGCCGCGCACGC CTTTCCGCGCGCCGA TERM 1976 2753982 - 2754011 + G 71 -9.2 -3.88291 | opp_overlap 2753992 CACGCCTTTCCGCGC GCCGAACTGACC GAAATG GGCCAGCTCGGC TTTCTCGGCATGCTG Rpal_2548 2753871 - 2754998 + | acyl-CoA dehydrogenase domain protein TERM 1977 2755345 - 2755308 - f 100 -21.7 -3.53224 | opp_overlap 2755310 2755313, overlap 2755313 CAGGCCCGCGCTAAA CACAATATCAATACCGT ACGT ACGGTATTGATATTGTG TGATAGATGAGGGCC TERM 1978 2755310 - 2755343 + F 86 -18.5 -2.80816 | opp_overlap 2755308 2755313, overlap 2755313 GGCCCGCGCTAAACA CAATATCAATACCGT ACGT ACGGTATTGATATTG TGTGATAGATGAGGG TERM 1979 2755313 - 2755340 + F 85 -14.4 -3.55447 | opp_overlap 2755313 2755308, overlap 2755310 CCGCGCTAAACACAA TATCAATACCGT ACGT ACGGTATTGATA TTGTGTGATAGATGA TERM 1980 2755340 - 2755313 - f 88 -14.4 -3.81488 | opp_overlap 2755310 2755313, overlap 2755308 CCGCGCTAAACACAA TATCAATACCGT ACGT ACGGTATTGATA TTGTGTGATAGATGA Rpal_2549 2755364 - 2755912 + | cytochrome B561 Rpal_2550 2758308 - 2755981 - | TonB-dependent receptor plug Rpal_2551 2758637 - 2759722 + | periplasmic binding protein Rpal_2552 2759719 - 2760810 + | transport system permease protein Rpal_2553 2760807 - 2761571 + | ABC transporter related Rpal_2554 2762202 - 2761573 - | hypothetical protein Rpal_2555 2762804 - 2762199 - | hypothetical protein TERM 1981 2762430 - 2762413 - G 74 -9.8 -3.86346 | GCATGGCCGTAGAAA CCGGCG ACGCCG CGCCGG AAGATGAGGTCGTCG Rpal_2556 2763318 - 2762818 - | hypothetical protein Rpal_2557 2763945 - 2764385 + | cytochrome c prime Rpal_2558 2764389 - 2765063 + | cytochrome B561 Rpal_2559 2765880 - 2765095 - | Enoyl-CoA hydratase/isomerase TERM 1982 2765124 - 2765155 + g 77 -16 -3.04144 | opp_overlap 2765112 2765134, overlap 2765134 ACACCGGCTGGCGCT TCCCAAGGAAGGCA TCGA TGCCTTCCTTGGCA TCTTCGGCCTGAAGG Rpal_2560 2766699 - 2765905 - | coenzyme A transferase Rpal_2561 2767691 - 2766696 - | coenzyme A transferase Rpal_2562 2768811 - 2767819 - | hypothetical protein TERM 1983 2768532 - 2768590 + g 87 -15.1 -3.78934 | gap 2, overlap 2768533 2768551 CCAGCGACAGCGTGT AGCCGTCG--GGCGCCGCCTTGGCGGCCG CGT CGGCCGCGATCGCGGTGCCGGCGCCGGCC TTGTTCTCGACCACC TERM 1984 2768533 - 2768589 + g 89 -18.6 -2.87146 | gap 2, overlap 2768532 2768551 CAGCGACAGCGTGTA GCCGTCG--GGCGCCGCCTTGGCGGCCG CGT CGGCCGCGATCGCGGTGCCGGCGCCGGC CTTGTTCTCGACCAC Rpal_2563 2770391 - 2768889 - | protein of unknown function DUF112 transmembrane Rpal_2564 2770867 - 2770391 - | protein of unknown function DUF1468 Rpal_2565 2770951 - 2771478 + | hypothetical protein TERM 1985 2771702 - 2771722 + G 73 -9.7 -3.89614 | ACCGTCGTCTTGCGC CATCTGCAG AAC CTGCAGAAG TTTCTCGGCGTTGCG Rpal_2566 2771582 - 2772475 + | transcriptional regulator, LysR family TERM 1986 2772479 - 2772522 + F 74 -9.1 -3.87346 | gap 3, overlap 2772482 2772483 GAACTCGAGTGATGG CGTGTGGCTGCA-TGTTGAGCG GAT CGCTCAACAATGC-GCCA-GTG TTTGCTCGTTATGGT TERM 1987 2772482 - 2772520 + F 74 -11.9 -3.51793 | overlap 2772479 2772483 CTCGAGTGATGGCGT GTGGCTGCA-TGTTGAGCG GAT CGCTCAACAATGC-GCCAG TGTTTGCTCGTTATG TERM 1988 2772483 - 2772519 + F 78 -15.4 -2.70353 | overlap 2772482 2772479 TCGAGTGATGGCGTG TGGCTGCA-TGTTGAGCG GAT CGCTCAACAATGC-GCCA GTGTTTGCTCGTTAT Rpal_2567 2772643 - 2773917 + | 4-aminobutyrate aminotransferase TERM 1989 2774476 - 2774447 - g 72 -11.4 -3.58522 | gap 1 ATGATCACCCGCAAA GTTGC-GCCGGCG CTTGC CGCCGGCTGCACC GTGGTGATCAAGCCG TERM 1990 2774536 - 2774502 - g 77 -13.5 -3.53091 | gap 1, opp_overlap 2774511 2774523 2774530, overlap 2774488 AGCCGGCGCCGGAAA CGCC-GCTCACCGCGC TGGC GCTCGGTGTGCTGGCG CAGCGTGCCGGCTTT TERM 1991 2774594 - 2774574 - g 72 -14.7 -2.73875 | overlap 2774571 GCGTGCTCAACATCA TCACCGGCG ATG CGCCGGCGA TCGGCAAGGCGTGGA Rpal_2568 2773946 - 2775406 + | succinic semialdehyde dehydrogenase Rpal_2569 2775456 - 2776754 + | acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Rpal_2570 2776754 - 2778343 + | thiamine pyrophosphate domain protein TPP-binding Rpal_2571 2778422 - 2780011 + | extracellular solute-binding protein family 5 Rpal_2572 2780008 - 2781030 + | binding-protein-dependent transport systems inner membrane component Rpal_2573 2781043 - 2781882 + | binding-protein-dependent transport systems inner membrane component Rpal_2574 2781879 - 2783537 + | ABC transporter related TERM 1992 2784216 - 2784226 + G 72 -8.2 -4.07568 | overlap 2784183 AGATCGCACGCGAGG GCCG CGC CGGC TTTTACGAAGGCGAA Rpal_2575 2783612 - 2785189 + | gamma-glutamyltransferase TERM 1993 2785250 - 2785209 - f 100 -16.6 -4.14392 | opp_overlap 2785222 GTCGAAGGCGGAAAA CACGGTCGATCGAGCCGG ACAGTG CCGGCTTGATCGACTGCG CCGAAGGATTGCGAT Rpal_2576 2785561 - 2786637 + | nuclease (SNase domain protein) TERM 1994 2786717 - 2786748 + T 73 -10.8 -3.61715 | gap 1, overlap 2786717 2786742 2786743 CAGGTCCGGTGGCGT C-CGTCGTTCGCGGG ATG CCCGCCGACGGCGAG TTCTTGCACGAACTC TERM 1995 2786788 - 2786815 + T 100 -13.4 -4.49556 | ATCGATCGTGACGGA TGGCGCAGGCGG GGTG CTGCCTGAGCCA TTTCTTTGATGCGAA Rpal_2577 2788932 - 2786836 - | heavy metal translocating P-type ATPase Rpal_2578 2789267 - 2788929 - | hypothetical protein Rpal_2579 2789601 - 2789260 - | hypothetical protein Rpal_2580 2789911 - 2789588 - | hypothetical protein Rpal_2581 2790261 - 2789929 - | hypothetical protein Rpal_2582 2790769 - 2790269 - | hypothetical protein TERM 1996 2791210 - 2791229 + H 71 -10.8 -3.48036 | overlap 2791213 AGATTTGACTGCGGT CAATTCGC AAAA GCGAATTG TTCCTTATGGTCGTC TERM 1997 2791243 - 2791257 + H 70 -10 -3.5594 | TGTTCCTTATGGTCG TCCTCG AAA CGAGGA TTTCCAGAGTGAATT Rpal_2583 2791266 - 2791757 + | ferric uptake regulator, Fur family TERM 1998 2791843 - 2791863 + T 71 -9.7 -3.70902 | opp_overlap 2791843 CTCGCCAGCACGACA CGCGAGC ACGAATG GCTCGCG TTTCGATATCACCGA Rpal_2584 2793256 - 2791883 - | FAD dependent oxidoreductase Rpal_2585 2794990 - 2793311 - | Dihydroxy-acid dehydratase TERM 1999 2794132 - 2794173 + g 70 -12.9 -3.01712 | CCACGACGTCCATTT CGATGCGGCTTTCGATGGC GATC GCCGTCAGATGCCGCACCG TGTTGACCGAAAGCC TERM 2000 2795051 - 2795019 - R 76 -14.1 -3.15427 | opp_overlap 2795013 2795022, overlap 2795022 AAGATGCGGGAGCAA TGAGCGTTCCGACTC GGC GCGCCGGAACGCTCT TCCACTTATCCGAGT TERM 2001 2795048 - 2795022 - R 75 -14.4 -2.78018 | opp_overlap 2795013 2795022, overlap 2795019 ATGCGGGAGCAATGA GCGTTCCGACTC GGC GCGCCGGAACGC TCTTCCACTTATCCG TERM 2002 2795022 - 2795048 + r 70 -12.2 -3.11291 | opp_overlap 2795022 2795019, overlap 2795013 ATGCGGGAGCAATGA GCGTTCCGACTC GGC GCGCCGGAACGC TCTTCCACTTATCCG Rpal_2586 2796364 - 2795057 - | major facilitator superfamily MFS_1 Rpal_2587 2796773 - 2797450 + | transcriptional regulator, GntR family Rpal_2588 2798109 - 2797489 - | hypothetical protein Rpal_2589 2799120 - 2798110 - | hypothetical protein TERM 2003 2799187 - 2799171 - R 73 -11.5 -3.61268 | GACCGAATGGGCAAA GCGGCAC CAC GCGCCGC GTCGCTGACAGTCGT Rpal_2590 2800543 - 2799365 - | hypothetical protein Rpal_2591 2801976 - 2800585 - | Nitrogenase Rpal_2592 2803511 - 2801976 - | Nitrogenase Rpal_2593 2804929 - 2803736 - | Cys/Met metabolism pyridoxal-phosphate-dependent protein Rpal_2594 2805221 - 2806522 + | O-acetylhomoserine aminocarboxypropyltransferase TERM 2004 2806584 - 2806620 + T 73 -10.7 -3.60792 | overlap 2806617 AACTTGATTGGGAGG CGGCGAAGCGTTCGGGG ACT TCTGGATCGCCTCGCCG TTTCGCCCTTCGCAA Rpal_2595 2807175 - 2806687 - | transcriptional regulator, AsnC family Rpal_2596 2807954 - 2807457 - | Acireductone dioxygenase ARD TERM 2005 2807793 - 2807836 + g 72 -11.6 -3.54424 | gap 1, opp_overlap 2807766 2807795, overlap 2807768 CGGCAGTGCGTCAAG CACGGTCGCGGCCGCGGTGTC GTC GA-GCAGCGGTCGCGCCAGTG TTTCCGCCAGTGCCG Rpal_2597 2808866 - 2807997 - | nitrogenase iron protein Rpal_2598 2809835 - 2808912 - | Radical SAM domain protein Rpal_2599 2810215 - 2809832 - | Dinitrogenase iron-molybdenum cofactor biosynthesis protein Rpal_2600 2810685 - 2812082 + | Pyridoxal-5'-phosphate-dependent protein beta subunit TERM 2006 2812314 - 2812257 - g 73 -13.3 -3.28712 | gap 1, opp_overlap 2812258 2812265 2812271 2812275, overlap 2812230 2812231 2812242 2812240 2812258 CGCGCGCTCGCAGAA CCCGACGCGCGCCGCGTTCGAGGCCG CGATCGC CGACGCCGAGCGCGGC-CACGCCGGT TTCGCTTTCGCCTCC TERM 2007 2812313 - 2812258 - g 80 -16.8 -2.57132 | gap 1, opp_overlap 2812258 2812265 2812271 2812275, overlap 2812230 2812231 2812242 2812240 2812257 GCGCGCTCGCAGAAC CCGACGCGCGCCGCGTTCGAGGCCG CGATCGC CGACGCCGAGCGCGGC-CACGCCGG TTTCGCTTTCGCCTC TERM 2008 2812258 - 2812313 + G 74 -10.2 -3.85165 | gap 1, opp_overlap 2812230 2812231 2812242 2812240 2812258 2812257, overlap 2812265 2812271 2812275 GCGCGCTCGCAGAAC CCGACGCGCGCCGCGTTCGAGGCCG CGATCGC CGACGCCGAGCGCGGC-CACGCCGG TTTCGCTTTCGCCTC Rpal_2601 2812084 - 2813256 + | Cystathionine gamma-synthase TERM 2009 2813292 - 2813315 + T 100 -18.2 -4.67697 | TTCTGAGCTATCTTC GATGCCCGGC ATGT GCCGGGCATC TTTATTGTTTTAGAA Rpal_2602 2814404 - 2813358 - | 2OG-Fe(II) oxygenase Rpal_2603 2814897 - 2815679 + | lipoprotein, YaeC family TERM 2010 2816104 - 2816120 + GF 78 -15.1 -2.74012 | GCGTGCGGAGATTGC GCGGCGG ATT CCGCCGC TGCTTGAGCTGGTCG Rpal_2604 2815757 - 2816821 + | ABC transporter related Rpal_2605 2816775 - 2817476 + | binding-protein-dependent transport systems inner membrane component Rpal_2606 2817512 - 2818825 + | O-acetylhomoserine/O-acetylserine sulfhydrylase Rpal_2607 2818854 - 2820359 + | Nitrogenase Rpal_2608 2820372 - 2821751 + | Nitrogenase Rpal_2609 2822868 - 2821768 - | Threonine aldolase Rpal_2610 2823169 - 2823420 + | hypothetical protein Rpal_2611 2824643 - 2823540 - | integral membrane sensor signal transduction histidine kinase TERM 2011 2823851 - 2823873 + g 75 -9 -4.07568 | GGATCACGATCATGC CGGGCGTTGC GTA GCGGCGCGCG TTTTCCAAAAGCGCG Rpal_2612 2825326 - 2824640 - | two component transcriptional regulator, winged helix family Rpal_2613 2825726 - 2825400 - | hypothetical protein TERM 2012 2825554 - 2825532 - G 100 -13.4 -4.30576 | CGGCCACGATGAAAA CCGATAGCCG AGG CGGCGATCGG GACGACATGTGCCCC Rpal_2614 2826038 - 2827255 + | efflux transporter, RND family, MFP subunit TERM 2013 2828893 - 2828905 + F 74 -10.5 -3.72324 | CGTGCTCGTCATCGT CGCCG CCG CGGCG TTGTTCATCCGCCTG TERM 2014 2829392 - 2829369 - f 91 -9.5 -4.56597 | GCTCCGTTGGAAAAA GCCGGCTCC TGAGCG GGACCCGGC CCAATGGGCAGGACG TERM 2015 2830193 - 2830239 + F 81 -15.1 -3.06183 | gap 2 GCGTTCATCCTCGGC GTC-GCGCCGCTG-GTCGTCGCC AGC GGCGCCGGCTCGGCGGCGCAGAA TTCGATCGGCATCGG Rpal_2616 2830651 - 2832156 + | RND efflux system, outer membrane lipoprotein, NodT family Rpal_2617 2832329 - 2833936 + | putative membrane protein of unknown function TERM 2016 2834824 - 2834795 - T 70 -7.9 -4.06502 | gap 1, opp_overlap 2834800 CACCCCCAAACGAAA CGAAGCTCTTCACG GAA CGCGAAGCG-TTCG ATGTGGCTGATGACG Rpal_2619 2835081 - 2834779 - | hypothetical protein TERM 2017 2835112 - 2835148 + r 100 -18.8 -4.18018 | gap 1, opp_overlap 2835116, overlap 2835112 TGGCATCTATTGTGA C-GAATGGCGCTGGCGG GATA CCGCCTGCGCCATTCCG TTTTGCGTGGACAGC TERM 2018 2835112 - 2835147 + r 91 -19 -3.10597 | opp_overlap 2835116, overlap 2835112 TGGCATCTATTGTGA CGAATGGCGCTGGCGG GATA CCGCCTGCGCCATTCC GTTTTGCGTGGACAG TERM 2019 2835143 - 2835116 - R 91 -18.4 -3.15663 | opp_overlap 2835112 2835112 ATCTATTGTGACGAA TGGCGCTGGCGG GATA CCGCCTGCGCCA TTCCGTTTTGCGTGG Rpal_2620 2837508 - 2835196 - | TonB-dependent siderophore receptor Rpal_2621 2838156 - 2837659 - | GCN5-related N-acetyltransferase Rpal_2622 2840401 - 2838170 - | TonB-dependent receptor plug TERM 2020 2838654 - 2838606 - G 80 -14 -3.66018 | gap 1, overlap 2838609 CCATCATCCCAATAA TAGGTGCCGCCGACGTG-AAAGC CTTG GCTCTGCACGTCGAAGGCACGTA GCGCCATGTCGGCGG TERM 2021 2838651 - 2838609 - G 74 -15.7 -2.64045 | gap 1, overlap 2838606 TCATCCCAATAATAG GTGCCGCCGACGTG-AAAGC CTTG GCTCTGCACGTCGAAGGCAC GTAGCGCCATGTCGG Rpal_2623 2841489 - 2840500 - | anti-FecI sigma factor, FecR Rpal_2624 2842369 - 2841611 - | ABC transporter related Rpal_2625 2843316 - 2842366 - | transport system permease protein Rpal_2626 2844286 - 2843309 - | transport system permease protein TERM 2022 2843884 - 2843864 - G 73 -9.7 -3.97834 | CAACGGCACCAGAAA CGGCTGC GTCGGCG GCAGCCG ATGGGCGATCGCCAG TERM 2023 2844251 - 2844218 - G 72 -13.1 -3.21416 | gap 1, opp_overlap 2844250, overlap 2844229 2844230 GATGCTGACGACGAA CAGGGCGACAAGCGCC AGC AGCGCG-GTCGCCCCG GCGGAGCGCGACGCC Rpal_2627 2845188 - 2844283 - | periplasmic binding protein Rpal_2628 2846067 - 2845198 - | Xylose isomerase domain protein TIM barrel Rpal_2629 2847377 - 2846067 - | hypothetical protein Rpal_2630 2848639 - 2847374 - | AMP-dependent synthetase and ligase Rpal_2631 2850369 - 2848636 - | IucA/IucC family protein Rpal_2632 2852134 - 2850353 - | IucA/IucC family protein Rpal_2633 2852399 - 2852920 + | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_2634 2854798 - 2853107 - | ABC transporter domain protein TERM 2024 2853995 - 2853978 - G 73 -4.1 -4.65933 | opp_overlap 2853978 GATTCGGAAAACAAA CCGAC CAATTGCT GTCGG TTCATCAATCGAAAC TERM 2025 2854158 - 2854128 - G 70 -6 -4.27584 | overlap 2854129 2854156 AGCGCGAATCGAAAA TCGGCTTCGCGCCG CTC CTGCTCGAAATCGA TCTGGATCAGTCGGC Rpal_2635 2855559 - 2854795 - | ferric iron reductase TERM 2026 2854861 - 2854825 - G 72 -5 -4.46212 | gap 1 TGTCGGATGAGAAAA CTGTGGC-CGCGCCTCG GGAA CGGGGCATGCGCTACAG AACCGGCGGTCGGGA Rpal_2636 2857913 - 2855583 - | TonB-dependent siderophore receptor TERM 2027 2858052 - 2858038 - R 71 -11.4 -3.4439 | CAGATGAACTGACAA CGAGGC TTA GCCTCG CGGCAAGGTGACACG Rpal_2637 2859137 - 2858517 - | hypothetical protein Rpal_2638 2860511 - 2859390 - | Ribonucleoside-diphosphate reductase TERM 2028 2860401 - 2860456 + g 77 -15.5 -3.03159 | gap 3 GTCGTCGACGCGCAC GCGCGC-GGCGCCGCGAT-CGATCGTGC CGA GCCCGGTCGTATC-CGGCGCTTGCGCGG TGTTGGCGAGATTCG Rpal_2639 2863456 - 2860532 - | ribonucleoside-diphosphate reductase, alpha subunit Rpal_2640 2864477 - 2863776 - | anaerobic ribonucleoside-triphosphate reductase activating protein Rpal_2641 2864625 - 2864434 - | hypothetical protein Rpal_2642 2866664 - 2864643 - | anaerobic ribonucleoside-triphosphate reductase Rpal_2643 2867535 - 2866999 - | hypothetical protein Rpal_2644 2869011 - 2867587 - | transcriptional regulator, XRE family Rpal_2645 2869155 - 2869580 + | thioesterase superfamily protein TERM 2029 2869744 - 2869726 - g 82 -16 -3.37796 | CCGGATCATCGACAA CGCAGCCG TGG CGGCTGCG TCGATCGCACGGCGT Rpal_2646 2869577 - 2871109 + | 2-methylcitrate dehydratase Rpal_2647 2871145 - 2872329 + | 2-methylcitrate synthase/citrate synthase II Rpal_2648 2872340 - 2873257 + | methylisocitrate lyase Rpal_2649 2873290 - 2873886 + | protein of unknown function DUF208 Rpal_2650 2874236 - 2876602 + | 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase Rpal_2651 2877460 - 2879862 + | TonB-dependent receptor TERM 2030 2879889 - 2879919 + G 70 -4 -4.45664 | opp_overlap 2879892, overlap 2879893 CAGATTGCCCTCAAC CTACGCAGC-GCGC TGATT GCGCTGCTGC-TCG TTTTCGTTCCGTTGG Rpal_2652 2879871 - 2883773 + | Cobaltochelatase Rpal_2653 2883770 - 2884246 + | hypothetical protein Rpal_2654 2884246 - 2884581 + | hypothetical protein TERM 2031 2884984 - 2884942 - f 81 -2.1 -5.1675 | overlap 2884943 TGAGCGACCAAAAAA TCGTGC-GTCCGTTCAAGGCA AGC CACCTTGAA-GAACTACACGT TGAAAGACGAAGTCA TERM 2032 2886156 - 2886133 - f 71 -13.2 -3.05844 | gap 1, opp_overlap 2886133 GGCTGCATCGTAACA GCGTCGATGCC GGT GGC-TCGACGC TGATTCAGGATGCGG TERM 2033 2887547 - 2887596 + G 70 -2 -4.59773 | gap 1, overlap 2887535 2887548 ATCCGGCGGCTCCGG TGATGCCTCC-GTTCATGCTGCG CGAGA TGCAGCAGGCGCTGGTGGTGTCG TTTTTGAGCGTGACG Rpal_2656 2886979 - 2887983 + | transcriptional regulator, AraC family TERM 2034 2888268 - 2888310 + G 71 -14.1 -2.87344 | gap 1, opp_overlap 2888262 GTTCGAAATGCTCGG GCAAGCGCGCGACCTCGCCG AAGC CGGTGAGG-CGTTCGCCTGC TATATGACGGCGCTG TERM 2035 2888348 - 2888376 + G 75 -13.7 -3.21962 | opp_overlap 2888318 2888337, overlap 2888340 TCGATGCCGAGCAGC GTGTCCGCGGCCG CGA CGGCCGCCGCCGC TTCCGTTCGTCCTAT Rpal_2657 2888056 - 2888928 + | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase Rpal_2658 2888940 - 2889830 + | ADP-ribosyl-(dinitrogen reductase) hydrolase TERM 2036 2889892 - 2889858 - T 83 -14.3 -3.53563 | opp_overlap 2889865, overlap 2889865 AGAGGTTGTCGCAAA TGGGAAAGGCCCCGC ATGCG GCGGAGCCTCTCTCA CGAACACATCGAATT TERM 2037 2889885 - 2889865 - T 78 -11.8 -3.71649 | opp_overlap 2889865, overlap 2889858 GTCGCAAATGGGAAA GGCCCCGC ATGCG GCGGAGCC TCTCTCACGAACACA Rpal_2659 2890078 - 2889959 - | hypothetical protein Rpal_2660 2890661 - 2890326 - | hypothetical protein TERM 2038 2891007 - 2891035 + H 100 -14.6 -5.61881 | gap 1, opp_overlap 2891007 TGGTTGGTGGCGAAA GCGCCC-TCGGCT CGAC AGCCGGTGGGCGC TTTTTGTTTTTGGAC TERM 2039 2891035 - 2891007 - H 74 -12.4 -3.53012 | gap 1, opp_overlap 2891007 TGGTTGGTGGCGAAA GCGCCC-TCGGCT CGAC AGCCGGTGGGCGC TTTTTGTTTTTGGAC TERM 2040 2891532 - 2891565 + G 72 -13.9 -3.05844 | gap 1, overlap 2891534 TCCGCGAAGCGTTGA TAGCGCGCGGC-GGCA CGG TGCTGGCCGAGCGCTA TCTTCCGGTCGGGGA Rpal_2661 2891057 - 2892214 + | putative aliphatic amidase expression-regulating protein, AmiC Rpal_2662 2892211 - 2892876 + | response regulator receiver and ANTAR domain protein TERM 2041 2894113 - 2894081 - g 70 -10.5 -3.7282 | overlap 2894101 CGACCTGACCAAGAA GGATCCGATGGCGCA ATA CACGCCGTCGAACCC GCCGCCCAAGTAAGT Rpal_2663 2892888 - 2894126 + | putative UreA/short-chain amide transport system substrate-binding protein precursor TERM 2042 2894150 - 2894127 - f 72 -12.4 -3.33696 | opp_overlap 2894137, overlap 2894101 CCGCCGCCCAAGTAA GTGCGGCGGA CCGC TCCGGCGCAC CCTGACGCGCCGGAG TERM 2043 2894137 - 2894168 + F 95 -20.2 -3.27022 | opp_overlap 2894101 2894127 AGTAAGTGCGGCGGA CCGCTCCGGCGC ACCCTGAC GCGCCGGAGCGG TTGCTCTCCCCTCAA Rpal_2664 2894245 - 2895117 + | inner-membrane translocator Rpal_2665 2895129 - 2896193 + | inner-membrane translocator TERM 2044 2896350 - 2896370 + G 81 -8.1 -4.63218 | opp_overlap 2896351, overlap 2896351 TGATCCTCGGCGAAT ACGCGCCCG GCT CGGGCGAGA TTTTCTTCGCCGGCG TERM 2045 2896351 - 2896369 + G 70 -11.6 -3.3761 | opp_overlap 2896351, overlap 2896350 GATCCTCGGCGAATA CGCGCCCG GCT CGGGCGAG ATTTTCTTCGCCGGC TERM 2046 2896408 - 2896430 + G 70 -10.5 -3.67588 | opp_overlap 2896395 CACCGCGCTCAAGTC GTTCGCGCG GATCG CGCGCGGGC TTTCGGTGAAGTTTC Rpal_2666 2896193 - 2896915 + | ABC transporter related Rpal_2667 2896908 - 2897621 + | ABC transporter related Rpal_2668 2897647 - 2898636 + | Acetamidase/Formamidase Rpal_2669 2898652 - 2900391 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Rpal_2670 2900407 - 2901168 + | short-chain dehydrogenase/reductase SDR Rpal_2671 2902416 - 2901472 - | ABC transporter related TERM 2047 2903102 - 2903064 - g 71 -15.2 -2.50816 | opp_overlap 2903064, overlap 2903063 GCCGGATTCATCAAC GCCACCGATGCGATCGGC GCG GCCGGCAACATCGGCGGC TATGTCGCGGTCGAC Rpal_2672 2902521 - 2903246 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Rpal_2673 2903250 - 2903945 + | molybdate ABC transporter, inner membrane subunit Rpal_2674 2904187 - 2903966 - | hypothetical protein Rpal_2675 2905344 - 2904310 - | transcriptional regulator, AraC family Rpal_2676 2905450 - 2905998 + | isochorismatase hydrolase TERM 2048 2906286 - 2906304 + GT 73 -3.8 -4.59511 | overlap 2906290 GATGATTGGGGGCAT CATGTCGA ACG TCGATCTG TTTTTGAAACCTGTT TERM 2049 2906640 - 2906654 + GT 84 -5.6 -4.91109 | opp_overlap 2906630, overlap 2906642 2906644 GAACACGCCGACCAG TGCCGC TTG GCGGGA TTTTTATAATCCGGC Rpal_2678 2907362 - 2907129 - | hypothetical protein Rpal_2677 2906272 - 2907225 + | hypothetical protein TERM 2050 2907209 - 2907231 + gT 73 -6.2 -4.37092 | overlap 2907210 CGGCGCCACGTCGGC CGCTGATCAC GAA GTGATCTGCA TTTTGTAAGGCCGGT Rpal_2679 2908079 - 2907414 - | Protein of unknown function DUF1847 TERM 2051 2908111 - 2908169 + r 100 -15.1 -4.14764 | gap 1, overlap 2908113 GTGATGGTTCTAAGT TCCGCGTAGCCGGCCGGCGCCGGTCGCG CAAT CGCGTAAGGCGTCAGCCGGCT-TGCGTA TTTGGTTATTTGCGC TERM 2052 2908113 - 2908167 + r 100 -17.7 -3.66237 | gap 1, overlap 2908111 GATGGTTCTAAGTTC CGCGTAGCCGGCCGGCGCCGGTCGCG CAAT CGCGTAAGGCGTCAGCCGGCT-TGCG TATTTGGTTATTTGC Rpal_2680 2908831 - 2908175 - | binding-protein-dependent transport systems inner membrane component Rpal_2681 2909930 - 2908812 - | ABC transporter related TERM 2053 2909409 - 2909454 + g 75 -9 -4.07568 | gap 2, opp_overlap 2909392, overlap 2909392 2909390 GCGCGCAATGCCGAC GCGCTGCTTCTGTCC-GC-CGG ACAG CCGCGCCGGATAGACGTCGCGC TTTTCCGACAACCCC Rpal_2682 2910745 - 2909930 - | NLPA lipoprotein TERM 2054 2912654 - 2912601 - g 72 -13.8 -3.01712 | gap 1, opp_overlap 2912601 2912603 GCTTCGCCCGCAAGA TCGCGGCGCAGCCTGCGCTCGCTGA TATCG TCAGCGAGCGTCTGCCGGGC-GCGA ATGGCGGCAGCGACG Rpal_2683 2911316 - 2912926 + | glucose-methanol-choline oxidoreductase Rpal_2684 2912923 - 2914305 + | phenylacetate--CoA ligase Rpal_2685 2914327 - 2915064 + | Enoyl-CoA hydratase/isomerase TERM 2055 2915438 - 2915419 - g 83 -4.2 -5.20534 | gap 1, opp_overlap 2915419, overlap 2915420 AGCAACCAAGAAAAA GGCCGG-TG GAT CAGCCGGCG TTCCGTGCTGCTGGG TERM 2056 2915695 - 2915682 - g 74 -2.3 -4.77757 | overlap 2915683 2915684 CTTCAAAAAGCAAAA TCTCG ACGT CGAGC TGGTGAATTTCTCCG Rpal_2686 2915401 - 2916489 + | ABC transporter substrate-binding protein TERM 2057 2916697 - 2916712 + G 70 -6 -4.25104 | overlap 2916656 CGGCGCGATCGCGAT CGCGGC GGTG GCCGGG TTTTGGTCGCAGCGG Rpal_2687 2916467 - 2917495 + | binding-protein-dependent transport systems inner membrane component TERM 2058 2918219 - 2918183 - g 95 -19.3 -2.86343 | opp_overlap 2918179 AGCTCAAGGACGACA TCGCCGTGGAGGCGCCG TAT CCGCGCCACCGCGGCGA TCCATACTTGGCCGA Rpal_2688 2917489 - 2918283 + | ABC transporter related TERM 2059 2918332 - 2918309 - T 70 -11.6 -3.20348 | opp_overlap 2918325 GCGACGAATAGCCAA CGGCGCGTCG TAAC CAGCGCGCCG CGATCTCTCTCCCTC TERM 2060 2918350 - 2918380 + T 100 -21.2 -5.00616 | ATCTCTCTCCCTCCT GACGCCGTTCCGGT TCT GCCGGAGCGGCGTC TTTTTTACGGGGCCG Rpal_2689 2920081 - 2918441 - | phosphate transporter TERM 2061 2920745 - 2920715 - g 70 -11.1 -3.53012 | gap 1, opp_overlap 2920714 2920735 TCGTCTCCTCGCAAA GGCGTATGCCGGCA CGGA TGCCGGC-CGCGCC AGTTTAAAAGGGAGC Rpal_2690 2920251 - 2920778 + | transcriptional regulator, MarR family Rpal_2691 2920765 - 2921502 + | hypothetical protein Rpal_2692 2921522 - 2921896 + | hypothetical protein Rpal_2694 2924341 - 2922611 - | periplasmic protein-like protein Rpal_2695 2924887 - 2924402 - | hypothetical protein TERM 2062 2925316 - 2925294 - H 78 -14.9 -3.06696 | overlap 2925275 CCTGCGTCCAACAGA CTGGCGGAC ACCAA GTCCGCCAG TGGAGCATTGAAGTA Rpal_2696 2926196 - 2927650 + | porin TERM 2063 2927676 - 2927709 + T 87 -18.9 -2.69319 | opp_overlap 2927682, overlap 2927682 TCGAAGCGCGAATCT GACGAACCCCGGCGG GCAA CCGCCGGGGTTTTTC GTTGTCTCCCGAATT TERM 2064 2927682 - 2927703 + T 100 -18.7 -4.96646 | opp_overlap 2927682, overlap 2927676 CGCGAATCTGACGAA CCCCGGCGG GCAA CCGCCGGGG TTTTTCGTTGTCTCC TERM 2065 2927703 - 2927682 - T 93 -18.7 -3.18681 | opp_overlap 2927682 2927676 CGCGAATCTGACGAA CCCCGGCGG GCAA CCGCCGGGG TTTTTCGTTGTCTCC Rpal_2697 2930188 - 2927951 - | Lytic transglycosylase catalytic TERM 2066 2928229 - 2928257 + g 73 -12.3 -3.36327 | AGTCCTCGATCAGGC CGCCGAGTTCGGC GGC GCCGAGCGCTGCG TTGTAAATCGAATCG TERM 2067 2929770 - 2929800 + g 73 -3.8 -4.63218 | overlap 2929784 2929784 2929790 ACGGGATCGGAGATG GTGTTGGCGACCTC GGT GGCTTCGCCAGCCC TTTTCTTGCGGGCGA TERM 2068 2930400 - 2930379 - R 100 -14.4 -5.07652 | GCGTGCAAAACAAAA GCGGCGCC GGTGAG GGCGCCGC TCGCGAAACAACCAA Rpal_2698 2931058 - 2930429 - | putative exported protein of unknown function Rpal_2699 2931305 - 2931715 + | NADH:ubiquinone oxidoreductase 17.2 kD subunit TERM 2069 2931729 - 2931754 + T 86 -15.4 -3.54424 | GAGTTTTCTCGCTCC CGCGGCGGCC CCGACA GGCCGTCGCG TTTAACCGCGTAGCA Rpal_2700 2932445 - 2931756 - | ThiJ/PfpI domain protein TERM 2070 2932303 - 2932346 + g 70 -10.2 -3.66178 | overlap 2932301 GGCAGCATCAGCGCG GTGTCGCTGGTGACCGGGGC CATC GTCTTGGCCACCAGATACAC TTTCGCGTTCGGCAG TERM 2071 2932856 - 2932836 - g 78 -13.9 -3.53224 | opp_overlap 2932836 2932851 CAGGCCTTTCTGAAA GCCGCCGCG AAG CGCGGCTGC CGCATCGCCAGCGTC Rpal_2701 2932569 - 2933507 + | transcriptional regulator, AraC family Rpal_2702 2934953 - 2933526 - | Beta-agarase TERM 2072 2934602 - 2934644 + g 72 -11.9 -3.57144 | gap 1, overlap 2934604 AGCCCCAGGAGGTGA GGCGGTCCGCCGCGACGCGT CGCC ACGCTTCGCGGCTG-CCGTA TTTACGCGTGCAGGC TERM 2073 2934604 - 2934642 + g 85 -16.7 -3.36515 | gap 1, overlap 2934602 CCCCAGGAGGTGAGG CGGTCCGCCGCGACGCGT CGCC ACGCTTCGCGGCTG-CCG TATTTACGCGTGCAG TERM 2074 2934840 - 2934799 - G 85 -13 -4.15044 | gap 1, overlap 2934770 2934800 TCGGTCCGGAAGAAA CCGCTGGCGTCGACCTTGC GATCG GCAAGGCCGCC-CCAGCGC GTGCGTGCAAGTTCA TERM 2075 2934839 - 2934800 - G 81 -16.5 -3.08812 | gap 1, overlap 2934770 2934799 CGGTCCGGAAGAAAC CGCTGGCGTCGACCTTGC GATCG GCAAGGCCGCC-CCAGCG CGTGCGTGCAAGTTC Rpal_2703 2935917 - 2934967 - | Alpha/beta hydrolase fold-3 domain protein TERM 2076 2936674 - 2936662 - g 75 -9.1 -4.09628 | GATCGTAAACAAGAA GGCGA GCT TCGCC GGCCTCGACAAGATC Rpal_2704 2936150 - 2937139 + | hypothetical protein Rpal_2705 2938584 - 2937340 - | peptidase S1 and S6 chymotrypsin/Hap Rpal_2706 2938968 - 2938648 - | hypothetical protein Rpal_2707 2939769 - 2939092 - | leucyl/phenylalanyl-tRNA/protein transferase Rpal_2708 2941046 - 2939829 - | hypothetical protein Rpal_2709 2941960 - 2941289 - | hypothetical protein Rpal_2710 2943184 - 2942093 - | signal transduction histidine kinase TERM 2077 2942878 - 2942915 + g 77 -11.3 -3.76373 | gap 1, opp_overlap 2942880, overlap 2942880 TGTCCTTGACCAGAT AATCGTCGGCACCG-GCT TTC AGCGCGGTGACGGCGATC TTTGAATCTTGCGAG TERM 2078 2942913 - 2942880 - G 72 -11.7 -3.54475 | gap 1, opp_overlap 2942878 2942880 TCCTTGACCAGATAA TCGTCGGCACCG-GCT TTC AGCGCGGTGACGGCGA TCTTTGAATCTTGCG TERM 2079 2942880 - 2942913 + g 77 -13.9 -3.4647 | gap 1, opp_overlap 2942880, overlap 2942878 TCCTTGACCAGATAA TCGTCGGCACCG-GCT TTC AGCGCGGTGACGGCGA TCTTTGAATCTTGCG Rpal_2711 2943624 - 2943181 - | response regulator receiver protein Rpal_2712 2945153 - 2943621 - | multi-sensor signal transduction histidine kinase Rpal_2713 2946694 - 2945342 - | acetyl-CoA carboxylase, biotin carboxylase TERM 2080 2946194 - 2946220 + g 72 -11.4 -3.53012 | overlap 2946204 GTGGGCGACCTTCAT GCCGCGGCCGCC GCC GCCCGCTGCGGC TTTGACCAGCACCGG Rpal_2714 2947306 - 2946812 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 2081 2947249 - 2947281 + g 95 -11.1 -4.52857 | overlap 2947251 TCAGGCTGCTGTCGT CGGTCGCCGGGGCGG TGG TCGGCTCGGCGGCGG TTTTCTCTGCAGGCT Rpal_2715 2947800 - 2947345 - | 3-dehydroquinate dehydratase, type II TERM 2082 2948075 - 2948050 - R 74 -14.7 -2.57192 | opp_overlap 2948052, overlap 2948046 ACCTAACGGAATGCA CAGGGGACGGC CGTA ACCGCCCCCTG TATCCGAGTGCCTTG Rpal_2716 2948763 - 2948092 - | protein of unknown function DUF1236 Rpal_2717 2949030 - 2949242 + | hypothetical protein Rpal_2718 2949580 - 2950533 + | cation efflux protein Rpal_2719 2950530 - 2951213 + | transcriptional regulator, TetR family Rpal_2720 2952065 - 2951298 - | DSBA oxidoreductase TERM 2083 2952238 - 2952202 - R 100 -25.2 -3.05384 | overlap 2952178 2952223 2952228 GCCGGTGCGACGCAA CGACGCCGGCGCCCGG GAGAA CCGAACGCCGGCGTCG TCAGATCGCGTGCCG Rpal_2721 2952885 - 2952256 - | Peroxidase TERM 2084 2953018 - 2953068 + r 100 -22.8 -2.91912 | opp_overlap 2953024 2953025, overlap 2953021 2953023 2953024 TCGCAAAAGCATCTG CAAAAAGCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGAATGTTG TGTCTCGGTACGTCG TERM 2085 2953021 - 2953065 + r 100 -18.7 -3.60525 | opp_overlap 2953024 2953025, overlap 2953018 2953023 2953024 CAAAAGCATCTGCAA AAAGCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGAATG TTGTGTCTCGGTACG TERM 2086 2953023 - 2953063 + r 100 -21.3 -3.37912 | opp_overlap 2953024 2953025, overlap 2953021 2953018 2953024 AAAGCATCTGCAAAA AGCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGAA TGTTGTGTCTCGGTA TERM 2087 2953024 - 2953062 + r 100 -24.8 -2.62265 | opp_overlap 2953024 2953025, overlap 2953023 2953021 2953018 AAGCATCTGCAAAAA GCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGA ATGTTGTGTCTCGGT TERM 2088 2953062 - 2953024 - R 100 -24.8 -4.60889 | opp_overlap 2953024 2953023 2953021 2953018, overlap 2953025 AAGCATCTGCAAAAA GCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGA ATGTTGTGTCTCGGT TERM 2089 2953061 - 2953025 - R 100 -28.3 -3.3581 | opp_overlap 2953024 2953023 2953021 2953018, overlap 2953024 AGCATCTGCAAAAAG CATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATG AATGTTGTGTCTCGG Rpal_2722 2953486 - 2953097 - | hypothetical protein Rpal_2723 2955100 - 2953673 - | peptidase M48 Ste24p TERM 2090 2954563 - 2954589 + g 70 -12.9 -3.01712 | overlap 2954563 GCCGGATCACTTCCT GCGGCGCGGTG ATCGC CGCCGCGCCGA TATTGGCCGCGCCGC Rpal_2724 2955208 - 2956398 + | aminotransferase class I and II Rpal_2725 2956527 - 2957114 + | BioY protein Rpal_2726 2957213 - 2958550 + | sodium:dicarboxylate symporter TERM 2091 2958578 - 2958611 + T 82 -11 -4.07687 | gap 1 AATACTCGCTCTGAT CGTGAGATGCCCGCG CTCGT CGCGGGCATCG-GCG TTTTGGGGGGGGCGT Rpal_2727 2959674 - 2958655 - | hypothetical protein TERM 2092 2959432 - 2959457 + g 72 -4.7 -4.5442 | overlap 2959433 2959435 CTGAGACGACAGTGC GTGGTTGGCAT GGCG GTGCCAACTAA TTTTGTACTTGGAGA TERM 2093 2959764 - 2959734 - R 100 -14.1 -4.56597 | opp_overlap 2959739, overlap 2959739 TCGGCGGCTGAAAAA GAAAATGCCCGCG GCGTG CGCGGGCATTTTG GAGGCTGTTGTCTTG TERM 2094 2959759 - 2959739 - R 100 -14 -5.26119 | opp_overlap 2959739, overlap 2959734 GGCTGAAAAAGAAAA TGCCCGCG GCGTG CGCGGGCA TTTTGGAGGCTGTTG TERM 2095 2959739 - 2959759 + r 93 -14 -4.11371 | opp_overlap 2959739 2959734 GGCTGAAAAAGAAAA TGCCCGCG GCGTG CGCGGGCA TTTTGGAGGCTGTTG Rpal_2728 2962949 - 2959788 - | ribonuclease, Rne/Rng family TERM 2096 2960332 - 2960379 + g 73 -13.2 -3.31792 | gap 1 TCAGCATTGCCGCGA CGGCG-ACGGCCACCGCGACGAC CGC GGCGGCGCGGACGGCGTTCGCCG TTCTCGCCCTGGTCG TERM 2097 2960530 - 2960576 + g 73 -12.9 -3.31853 | overlap 2960556 TCGGCGGCTTCACGC GGCT-CACCCGACCGCCGACGCC GGC GGCGACGGCGG-CGCTTGCGGCC TTCGCTTTCGCTTTC TERM 2098 2960556 - 2960581 + g 74 -10.3 -3.84451 | overlap 2960530 CCGCCGACGCCGGCG GCGACGGCGGC GCTT GCGGCCTTCGC TTTCGCTTTCGCCGG TERM 2099 2961879 - 2961905 + g 71 -12.2 -3.34013 | overlap 2961873 CGACAGGTAGGTGGT GAGCGCAGCACC CTT GTTGCCGCGCTC TTCCTTGACGACCTG TERM 2100 2962603 - 2962638 + g 79 -3.9 -4.90079 | overlap 2962617 2962627 CGGCGGCGATGGCTG CGATGCCGCG-ACCGGC GGCG GCTGGAGCGCTGC-TCG TTTTCTTCTTCGGCT TERM 2101 2963006 - 2962983 - H 74 -11.7 -3.53761 | gap 1, overlap 2962998 GAAGCGCGCGCGAAA CGGCTCGCGC AAGCA GCGCG-GCCG GCAGACGCGACGGTC Rpal_2729 2963650 - 2964960 + | N-acetylmuramoyl-L-alanine amidase Rpal_2730 2965180 - 2967678 + | penicillin-binding protein, 1A family Rpal_2731 2967797 - 2968928 + | hypothetical protein TERM 2102 2969128 - 2969112 - g 72 -15.1 -2.71011 | AGCCCGGCTGAAGCA GCGCGCG ACG CGCGCGC CATCCTCACAATGGT Rpal_2732 2968935 - 2969828 + | 6-phosphogluconate dehydrogenase NAD-binding Rpal_2733 2971325 - 2969955 - | Peptidase M23 TERM 2103 2969998 - 2970028 + g 71 -9.6 -3.78953 | overlap 2969999 GCGCGCAGGAATTTC TGCGGGTCGACGGC TTC GCCGTCGATGCGGG TTTCGTAGTGCAGAT TERM 2104 2970503 - 2970483 - G 73 -13.9 -3.15544 | opp_overlap 2970495 TTTCACCGGCACGAA CGGGCCGCC AAC GGCGGCGCG CGGCGCGGAGGCTTC Rpal_2734 2972137 - 2971421 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 2105 2972003 - 2972057 + g 75 -14 -3.22223 | overlap 2971959 2972005 TGCAGCGGGTGACTT GGCGGCGGCCTTCTTCACGGCCGTGG TTT TCGCGGCGGTGGTCTTGGCTGCCGCC TTCGTCGTCACCTTG TERM 2106 2976048 - 2976021 - g 83 -9 -4.3739 | overlap 2976024 CACCGGCCGACAAAA TAACGGCGCCGA TTTC CCGGCGCCGCCC AACTAATCAGATAAC TERM 2107 2976045 - 2976024 - g 100 -15.1 -4.30995 | overlap 2976021 CGGCCGACAAAATAA CGGCGCCGA TTTC CCGGCGCCG CCCAACTAATCAGAT Rpal_2735 2972332 - 2976054 + | hypothetical protein TERM 2108 2976123 - 2976171 + T 76 -11 -3.68351 | gap 1, opp_overlap 2976135, overlap 2976124 2976131 GGCCCGATGACAGGC TCCG-CTAAGCAATCCAGCTCGG TGCA CGGCGCTGGATTGCTTCGTCGGC TTTGCCTCCTCGCAA TERM 2109 2976124 - 2976170 + T 75 -14.5 -2.80796 | gap 1, opp_overlap 2976135, overlap 2976123 2976131 GCCCGATGACAGGCT CCG-CTAAGCAATCCAGCTCGG TGCA CGGCGCTGGATTGCTTCGTCGG CTTTGCCTCCTCGCA TERM 2110 2976131 - 2976162 + T 73 -13 -3.2048 | opp_overlap 2976135, overlap 2976124 2976123 GACAGGCTCCGCTAA GCAATCCAGCTCGG TGCA CGGCGCTGGATTGC TTCGTCGGCTTTGCC Rpal_2736 2976762 - 2976202 - | cytochrome B561 TERM 2111 2976820 - 2976798 - R 76 -6.1 -4.62069 | overlap 2976782 2976781 2976799 GCGGCACGTCAAAAA CCGCCGCGC GAGCA GCCCGCCGG ATGATGCCCGGCAGA Rpal_2737 2978200 - 2976983 - | major facilitator superfamily MFS_1 Rpal_2738 2979541 - 2978285 - | tyrosyl-tRNA synthetase Rpal_2739 2979699 - 2980802 + | protein of unknown function UPF0075 Rpal_2740 2981503 - 2980856 - | hypothetical protein TERM 2112 2981611 - 2981572 - H 70 -11.9 -3.14132 | GGGTCCTGCCAGCAA CGGCCGCCGGCTGCCGC AACGCG GAGGGGGCAGGCGGCCG GCGGAAACGGGGAGC Rpal_2741 2981740 - 2982912 + | aminotransferase class V TERM 2113 2984293 - 2984266 - g 70 -9.9 -3.73783 | gap 1 CATCGAAGCCAAGAA CGCCTCGACGCT GTTCG AGCA-CGAGGCG ACCACGTCGAAGATC Rpal_2742 2982995 - 2984476 + | FeS assembly protein SufB Rpal_2743 2984609 - 2985367 + | FeS assembly ATPase SufC TERM 2114 2985909 - 2985939 + G 89 -16.8 -3.55444 | GCTGCACATCCTTCA CATCGCCTCCGGCG GTG CGCCGGCCGCGATG TTTACCCGGTCGCGG Rpal_2744 2985391 - 2986704 + | FeS assembly protein SufD TERM 2115 2987350 - 2987380 + G 83 -12.6 -4.1523 | overlap 2987367 AGGCAGCGGTGCATC TCGCCATCGACGTC CAG GACATCGATTGCGA TTTCTATGTGATGAC Rpal_2745 2986701 - 2987948 + | cysteine desulfurase, SufS subfamily Rpal_2746 2987945 - 2988313 + | FeS assembly SUF system protein Rpal_2747 2988321 - 2988737 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpal_2748 2988867 - 2989238 + | iron-sulfur cluster assembly accessory protein TERM 2116 2989284 - 2989304 + F 74 -14.7 -2.55712 | overlap 2989283 2989281 TCCCAACGTGTAGAG CGCGCGGTG CGC TACCGCGCG ATATTGTGCATGTCC Rpal_2749 2989392 - 2991356 + | hypothetical protein TERM 2117 2991760 - 2991788 + G 79 -17.5 -2.52464 | overlap 2991752 2991748 GCTCGAACTCGGCGA TGGCCGCGTCG TGTTCGC CGACGCGGCCA TCGATTGCAGCGGCC Rpal_2750 2991362 - 2992462 + | Dehydrogenase (flavoprotein)-like protein TERM 2118 2992561 - 2992535 - g 70 -10.8 -3.53012 | overlap 2992536 2992538 TCGCGGCCGCCGAAA CCAGCGCGGTGA AGA TCATCGCGCCGA CCGACAAGACGATCA TERM 2119 2992746 - 2992710 - g 71 -12.1 -3.30124 | overlap 2992712 GCGGATGTTCGACAA CATGCTGGCTGCGGCCG AAG CGGCCGGCGCCACCAAG GCCGATGCGGTGCGG TERM 2120 2992744 - 2992712 - g 73 -13.3 -3.21924 | overlap 2992710 GGATGTTCGACAACA TGCTGGCTGCGGCCG AAG CGGCCGGCGCCACCA AGGCCGATGCGGTGC Rpal_2751 2992459 - 2992932 + | Endoribonuclease L-PSP Rpal_2752 2993018 - 2994688 + | TPR repeat-containing protein Rpal_2753 2994803 - 2995309 + | TfoX domain protein TERM 2121 2995304 - 2995288 - T 75 -13.7 -3.10715 | overlap 2995273 GGCAGCAGCAGCGAA GCGCAGC CGG GCTGCGC GCTGACGCCGACGTC Rpal_2754 2996385 - 2995318 - | diguanylate cyclase TERM 2122 2995481 - 2995510 + g 70 -8.5 -3.96068 | gap 1 ACGCCGGCCGATAGC GTCACCCGGCCGAG GAT CTCG-CCGGTCGAC TTCTTCTTCAGCTCC TERM 2123 2996055 - 2996090 + g 71 -14.8 -2.67143 | gap 1, overlap 2996045 2996045 GATCGTCGCCGAAGC TGGCGGTGTT-GCCGAG CGT CTCGGCGAGCAGCGCCA TGATGTCGTCGATCT Rpal_2755 2997902 - 2996484 - | DEAD/DEAH box helicase domain protein TERM 2124 2997698 - 2997708 + g 72 -8.2 -4.10161 | overlap 2997694 GGGGCATGCGAGCCC GGGC GCG GCCC TTTTCCAGCATCGTC Rpal_2756 2999198 - 2998176 - | transcriptional regulator, AraC family TERM 2125 2999859 - 2999836 - g 79 -3 -5.0538 | gap 1, opp_overlap 2999819 2999837, overlap 2999837 GCGCAGGCGAAAAAA GGCCTGCCGCA ATT TGCCGC-GGAC TTCGATCGGATCGAT Rpal_2757 2999524 - 3001209 + | methyl-accepting chemotaxis sensory transducer TERM 2126 3001343 - 3001372 + F 73 -11.4 -3.54424 | gap 1 TTCTGACCGACTATG GCGCAGGCGGACG CGATC CGGCCGCCT-CGC TTTGAGGGACTGGAA Rpal_2758 3001387 - 3002892 + | peptidase C14 caspase catalytic subunit p20 Rpal_2759 3003783 - 3002947 - | transcriptional regulator, XRE family Rpal_2760 3003882 - 3004787 + | NAD-dependent epimerase/dehydratase Rpal_2761 3005009 - 3004821 - | hypothetical protein TERM 2127 3005123 - 3005094 - R 75 -14.5 -2.78384 | gap 1, opp_overlap 3005090 3005086 GCGCGTGCGAGCAGA TTGCTGCAGC-ATC GAT GATTGCTGCAGCAA AGAGTTCGTCATTGC TERM 2128 3005146 - 3005187 + r 71 -12.5 -3.07994 | opp_overlap 3005146, overlap 3005151 GTCATTGCGAGCGAA GCGAAGCAATTCATCTC AGTGCAGG GACATGGATTGCTTCGC TTCACTCGCATTGAC Rpal_2762 3005699 - 3005229 - | conserved hypothetical protein; putative signal peptide TERM 2129 3005550 - 3005517 - G 78 -15.1 -3.25823 | GTCGGCCGAGACGAA CCGCCGGCCGGGGCC GTCC GGCGCCGGCCCGCCG TCCTCACTGAAGATC TERM 2130 3005602 - 3005564 - G 72 -13.1 -3.08679 | opp_overlap 3005563 3005565 CGTCCTCACTGAAGA TCG-CGCGCGGCACGTCGG CGG CCGCCGAGCC-CGCGGCGA CGTTGTAGCGCTGCC Rpal_2763 3005841 - 3006128 + | plasmid maintenance system killer Rpal_2764 3006142 - 3006429 + | plasmid maintenance system antidote protein, XRE family Rpal_2765 3008493 - 3006442 - | DNA topoisomerase IV, B subunit Rpal_2766 3008951 - 3009481 + | SNARE associated Golgi protein TERM 2131 3010055 - 3010028 - g 73 -13.4 -3.29471 | opp_overlap 3010025 CGGCGACCACATCAA CGGCCTGCTCGA TGCG TCGGGCAAGCCG GCGTTTCCGAACGCC TERM 2132 3010539 - 3010507 - g 70 -9.8 -3.71913 | gap 1, overlap 3010505 3010508 GCCACATCGAAAAGA CCGCCGACGGCTACC GCAT GGT-GCCGTCGCCGT GGAATCCGGTGATCT Rpal_2767 3009567 - 3010556 + | beta-lactamase domain protein Rpal_2768 3011247 - 3010702 - | hypothetical protein Rpal_2769 3011698 - 3012363 + | FMN-binding negative transcriptional regulator Rpal_2770 3012378 - 3013373 + | N-acetyl-gamma-glutamyl-phosphate reductase Rpal_2771 3013443 - 3014042 + | Methyltransferase type 12 Rpal_2772 3014297 - 3016093 + | Radical SAM domain protein TERM 2133 3016198 - 3016175 - f 73 -8.8 -4.05714 | gap 1, overlap 3016171 ACCCGGAATCAGAAA CG-GGCACCGC TTG GCAGCGCCGCG CAGAGCAACTTCGAG Rpal_2773 3016340 - 3016702 + | hypothetical protein Rpal_2774 3017105 - 3016707 - | Endoribonuclease L-PSP Rpal_2775 3018153 - 3017455 - | transcriptional regulator, GntR family Rpal_2776 3018464 - 3019252 + | ABC transporter related Rpal_2777 3019252 - 3020130 + | binding-protein-dependent transport systems inner membrane component Rpal_2778 3020196 - 3021173 + | NMT1/THI5 like domain protein TERM 2134 3021185 - 3021212 + F 100 -19.2 -3.75824 | gap 1, opp_overlap 3021177 3021174 GTAACCAGGCCGAGA CGCCGGCGATCCG AGA CGG-TCGCCGGCG TTGTCTTCTCAAGTC TERM 2135 3021658 - 3021680 + G 72 -14.8 -2.79183 | opp_overlap 3021625 3021624, overlap 3021658 GGCTCGTCGAGCGGG TCGGCCGCCG CGG TGGCGGCCGG TATCGTGCCGATGGC Rpal_2779 3021244 - 3022521 + | Amidase TERM 2136 3022567 - 3022522 - T 82 -14.6 -3.33696 | opp_overlap 3022516 3022516 3022531 GCGCTGGCGAACTAA CTTGAGCGACGTGCGGCTGC TGCTTC GCCGCCGCGCGTCGTTCAGG ATCGCACTTTGACGT Rpal_2780 3024368 - 3022563 - | poly(R)-hydroxyalkanoic acid synthase, class I Rpal_2781 3024695 - 3025000 + | hypothetical protein TERM 2137 3025172 - 3025147 - f 71 -9.1 -3.71848 | gap 1 CCCTCCGATCAAGAA CGCGGTAACGAT CCC ACCGTTACC-CG GAGTCGAGGACCATG Rpal_2782 3025185 - 3026405 + | aminotransferase class I and II TERM 2138 3027437 - 3027464 + G 70 -11.2 -3.53224 | gap 1 GGCGGATATCGCCGA CGTCGCC-CGCGG CAT CCGCGCGGTGCCG TTTGGCCGGCCGGTG Rpal_2783 3026484 - 3027809 + | Homoserine dehydrogenase Rpal_2784 3027872 - 3028876 + | fructose-1,6-bisphosphatase, class II TERM 2139 3028872 - 3028908 + F 100 -9.5 -4.96848 | opp_overlap 3028877 3028884, overlap 3028873 3028874 3028877 AGAAGTTCCACCTCG ATTAAGTCGAAACCGAT TTC ATCGGGTTCGACTTACG TTTTTCTGTAACGCG TERM 2140 3028873 - 3028907 + F 77 -13 -3.57627 | opp_overlap 3028877 3028884, overlap 3028872 3028874 3028877 GAAGTTCCACCTCGA TTAAGTCGAAACCGAT TTC ATCGGGTTCGACTTAC GTTTTTCTGTAACGC TERM 2141 3028874 - 3028906 + F 81 -16.5 -2.74094 | opp_overlap 3028877 3028884, overlap 3028873 3028872 3028877 AAGTTCCACCTCGAT TAAGTCGAAACCGAT TTC ATCGGGTTCGACTTA CGTTTTTCTGTAACG TERM 2142 3028903 - 3028877 - f 76 -13.8 -3.15544 | opp_overlap 3028877 3028874 3028873 3028872, overlap 3028884 TTCCACCTCGATTAA GTCGAAACCGAT TTC ATCGGGTTCGAC TTACGTTTTTCTGTA TERM 2143 3028877 - 3028903 + F 79 -13.8 -3.50684 | opp_overlap 3028877 3028884, overlap 3028874 3028873 3028872 TTCCACCTCGATTAA GTCGAAACCGAT TTC ATCGGGTTCGAC TTACGTTTTTCTGTA TERM 2144 3029190 - 3029216 + G 73 -13.1 -3.26545 | CGTGCAGTTCATCTA TCACCGATCGT GCTGG ACGGTCGGTGA TTACTGCTATCTGCA Rpal_2785 3028984 - 3029427 + | GCN5-related N-acetyltransferase Rpal_2786 3029493 - 3030218 + | haloacid dehalogenase, type II TERM 2145 3030253 - 3030294 + F 93 -20.3 -3.06183 | opp_overlap 3030258 3030262, overlap 3030258 3030262 TCTCCGTCATTGCGA GCGAAGCAATCCAGCTCCG TGCA CTGAGCTCGATTGCTTCGC TTCGCTCGCAATGAC TERM 2146 3030258 - 3030289 + F 70 -11.6 -3.19192 | opp_overlap 3030258 3030262, overlap 3030253 3030262 GTCATTGCGAGCGAA GCAATCCAGCTCCG TGCA CTGAGCTCGATTGC TTCGCTTCGCTCGCA TERM 2147 3030404 - 3030426 + G 71 -9.1 -3.87815 | gap 1, overlap 3030405 CTCCCATCTCCGTTT TGCCGGC-CG AGAC CGTGCCGGCG TTTCTCGGCGTGACC Rpal_2787 3030382 - 3032223 + | single-stranded-DNA-specific exonuclease RecJ Rpal_2788 3032677 - 3032387 - | hypothetical protein Rpal_2789 3033880 - 3032762 - | hypothetical protein TERM 2148 3033752 - 3033731 - G 73 -12.3 -3.41073 | overlap 3033729 GAGGTGATCGAAATA CGCGCCGAT CAGC ATCGGCACG CCCGCGGCGAGTGCG Rpal_2790 3035127 - 3033898 - | lytic murein transglycosylase TERM 2149 3035073 - 3035017 - G 74 -15.1 -3.07816 | gap 2 GCGCCATTCATCGAA GCCGGCCGGCGCCGCGGCGGAAGCTGC GGCCG GCAGCATC-ATGGCGGCGCCGAC-GGC CGTCTGCAGCAGGCG Rpal_2791 3035350 - 3036330 + | diacylglycerol kinase catalytic region TERM 2150 3036359 - 3036379 + T 86 -15.4 -3.54424 | opp_overlap 3036359 CATGCCCACGAAAAA GCCCGCCG GGATG CGGCGGGC TTTGCGGGAGTCAGC TERM 2151 3036379 - 3036359 - T 100 -15.4 -4.72986 | opp_overlap 3036359 CATGCCCACGAAAAA GCCCGCCG GGATG CGGCGGGC TTTGCGGGAGTCAGC Rpal_2792 3036975 - 3036409 - | translation elongation factor P TERM 2152 3038001 - 3038033 + G 71 -9 -3.86015 | opp_overlap 3037994 GACGAGAAGGAGCGG CGCTACGGTGAGCG CTATC CGCTCGACGAGGCG TTTCTCGCGGCAGTC Rpal_2793 3037113 - 3038168 + | tRNA synthetase class II (D K and N) TERM 2153 3038749 - 3038769 + G 77 -12.5 -3.72695 | TCTTCCGGTGGCCGA TCCGGCGCG GAT CACGCCGGA TTTGGTGCGCGCGCT Rpal_2794 3038165 - 3039256 + | lysine 2,3-aminomutase YodO family protein Rpal_2795 3039417 - 3039677 + | hypothetical protein TERM 2154 3039697 - 3039656 - T 82 -14.6 -3.37245 | opp_overlap 3039663, overlap 3039659 3039661 CGACCGCAAGATCAA GAGCATCTGCCGCGGCT-GC TGAC GCGAACCGCGGCAGACG-TC GCGCGATTAGCTGCT TERM 2155 3039695 - 3039659 - T 83 -17.4 -2.54723 | gap 1, opp_overlap 3039663, overlap 3039656 3039661 CCGCAAGATCAAGAG CATCTGCCGCGGCT-GC TGAC GCGAACCGCGGCAGACG TCGCGCGATTAGCTG TERM 2156 3039693 - 3039661 - T 81 -16.4 -2.80779 | gap 1, opp_overlap 3039663, overlap 3039659 3039656 GCAAGATCAAGAGCA TCTGCCGCGGCT-GC TGAC GCGAACCGCGGCAGA CGTCGCGCGATTAGC Rpal_2796 3040294 - 3039704 - | hypothetical protein Rpal_2797 3040801 - 3041028 + | hypothetical protein TERM 2157 3041330 - 3041351 + F 84 -8.7 -4.45544 | gap 1 ACCCGATGGTGGCGC TGGC-GGGCG GCT CGTCCGGCCA TTTTCGTTGCTACAG TERM 2158 3041919 - 3041936 + F 77 -2.7 -5.0538 | gap 1, overlap 3041920 3041921 CTCAATCCGGTAATC GTCGCTTG GCT CAAG-GGC TTTTTTCAGCTGAGC TERM 2159 3042634 - 3042624 - g 70 -8.2 -3.98762 | AAGGACAAGACCAAA CGCG AGC CGCG CAAATCGGTGCGGCA Rpal_2798 3042603 - 3042860 + | type IV pilus assembly PilZ TERM 2160 3042905 - 3042933 + T 85 -15.4 -3.51329 | opp_overlap 3042905 3042909, overlap 3042909 CGCCGAGGCAGAAAA GAAAGGCTTCGC TGCTC GCGGAGCCTTTC TTGTGATTGACGATG TERM 2161 3042933 - 3042905 - T 100 -13.2 -4.42386 | opp_overlap 3042905 3042909, overlap 3042909 CGCCGAGGCAGAAAA GAAAGGCTTCGC TGCTC GCGGAGCCTTTC TTGTGATTGACGATG TERM 2162 3042929 - 3042909 - T 88 -8.2 -4.7878 | opp_overlap 3042905 3042909, overlap 3042905 GAGGCAGAAAAGAAA GGCTTCGC TGCTC GCGGAGCC TTTCTTGTGATTGAC TERM 2163 3042909 - 3042929 + T 95 -10.4 -4.3953 | opp_overlap 3042909 3042905, overlap 3042905 GAGGCAGAAAAGAAA GGCTTCGC TGCTC GCGGAGCC TTTCTTGTGATTGAC Rpal_2799 3043623 - 3043174 - | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 2164 3043224 - 3043234 + g 72 -8.2 -4.08216 | overlap 3043217 GCTCCTGCGGCGGCA GGGC TTC GCCC TTTTGCAGCAGCTCG TERM 2165 3043779 - 3043750 - H 100 -19.5 -4.18506 | opp_overlap 3043753, overlap 3043753 GGAGGTTCAAAACAA TAAGGTCTGGAGC CGGG GCTCCAGACCTTA TGCTCGCTCGGGGGA TERM 2166 3043776 - 3043753 - H 100 -16.8 -4.20868 | opp_overlap 3043753, overlap 3043750 GGTTCAAAACAATAA GGTCTGGAGC CGGG GCTCCAGACC TTATGCTCGCTCGGG TERM 2167 3043753 - 3043776 + H 89 -16.8 -3.4252 | opp_overlap 3043753 3043750 GGTTCAAAACAATAA GGTCTGGAGC CGGG GCTCCAGACC TTATGCTCGCTCGGG TERM 2168 3043817 - 3043835 + H 71 -8.1 -3.91911 | gap 1, opp_overlap 3043806, overlap 3043806 3043817 CGAACGGGACGCAGC GGC-GCCG AGCA CGGCGGCC TTTGCTTCCCATCGC TERM 2169 3043901 - 3043872 - H 93 -9.3 -4.74132 | opp_overlap 3043872 ACAGCCGACGAAAAA GAGCCCCGC CTTGGAGGTCGC GCGGGGCTC TTTCAGAGGAGGTCA Rpal_2800 3044116 - 3044877 + | Silent information regulator protein Sir2 TERM 2170 3045032 - 3045051 + F 76 -7.8 -4.25056 | opp_overlap 3045030, overlap 3045033 GCTCGGCGAATCATC CTCGTCGC GGAA GCGACGAA TTTGTTGATGACGTG Rpal_2801 3045081 - 3045788 + | cold-shock DNA-binding domain protein TERM 2171 3045828 - 3045809 - f 91 -16.4 -3.63627 | opp_overlap 3045809, overlap 3045790 CGCCCAGAGGGCAAA CGGCGCGC ACAC GCGCGCCG TTCTTGATCGCGCCA TERM 2172 3045809 - 3045828 + F 93 -16.4 -3.71848 | opp_overlap 3045790 3045809 CGCCCAGAGGGCAAA CGGCGCGC ACAC GCGCGCCG TTCTTGATCGCGCCA Rpal_2802 3045986 - 3046456 + | protein of unknown function DUF192 TERM 2173 3046789 - 3046769 - f 83 -9.1 -4.28994 | opp_overlap 3046768 3046769 CAGCATTGACGAAAA TCGACATAG GGT CTATATCGA CTTTCAATAGAGGCC TERM 2174 3046924 - 3046907 - g 76 -8.3 -4.18197 | overlap 3046908 ATGGCTGACGTAAAA CGCGCCC GATC GGGCGCC GAAATACATCTCGAG Rpal_2803 3046841 - 3047146 + | transcriptional regulator, PadR-like family Rpal_2804 3047134 - 3047676 + | hypothetical protein TERM 2175 3047703 - 3047682 - Tf 78 -15.9 -2.8092 | overlap 3047672 3047670 GAAGATCTGACCAGA TGTCGCGGG CTTG CCCGCGACA TCACTCCGACGGAAT TERM 2176 3048064 - 3048048 - Tf 74 -9.4 -3.92641 | AATCGCAGGGACAAA TGGGCG GGACT CGCCCA GGCTGTGGGCGGATG Rpal_2806 3050562 - 3049288 - | hypothetical protein Rpal_2805 3048236 - 3049354 + | glycosyl transferase group 1 Rpal_2807 3050805 - 3051110 + | ETC complex I subunit conserved region TERM 2177 3051480 - 3051453 - g 71 -14.8 -2.54325 | overlap 3051452 3051448 GCGCGCCAAACATAC CGCGCGCGGCAA GCTG CTGCCGCGCGAG CGCGTCGATCTGCTG TERM 2178 3052578 - 3052602 + G 86 -7.1 -4.89852 | gap 1, opp_overlap 3052572 CGGCAATTACGGCAT GTGCGGC-CG GGCGTA CGCGCCGCGC TTTTTGTGGATGTGG Rpal_2808 3051310 - 3052914 + | Propionyl-CoA carboxylase TERM 2179 3054076 - 3054094 + G 74 -14.6 -3.01924 | TGCCGGCTATCGCAG CGGCGACA GCG TGTCGCCG TATTACGACGCGATG Rpal_2809 3052931 - 3054943 + | Carbamoyl-phosphate synthase L chain ATP-binding Rpal_2810 3055064 - 3055969 + | pyruvate carboxyltransferase Rpal_2811 3057424 - 3056066 - | TRAP dicarboxylate transporter, DctM subunit TERM 2180 3056631 - 3056646 + g 72 -11.8 -3.53444 | AGCAGCGCCAGCAGG CCGCCG AGGC CGGCGG TTTCGGACGGCGTCG Rpal_2812 3057972 - 3057421 - | Tripartite ATP-independent periplasmic transporter DctQ component Rpal_2813 3058988 - 3057969 - | TRAP dicarboxylate transporter- DctP subunit Rpal_2814 3059259 - 3059498 + | pentapeptide MXKDX repeat protein TERM 2181 3061417 - 3061454 + G 72 -13.3 -3.13403 | gap 1, opp_overlap 3061405, overlap 3061403 TTATCGGCTCGGCTC G-GGCGCGCCGACGCTCG GCG CGGGCGGCGACGTGCCGC TGTTCGTCAAGGCCG Rpal_2815 3060023 - 3063016 + | outer membrane insertion C-terminal signal Rpal_2816 3063193 - 3063651 + | peptidylprolyl isomerase FKBP-type TERM 2182 3063666 - 3063687 + T 78 -15.1 -2.71681 | opp_overlap 3063652 AGGCCCATGACGCGA TGGCCCGGC ACGA GCCGGGCCG TCGTTGCCGCGGTTA Rpal_2817 3064041 - 3063700 - | hypothetical protein Rpal_2818 3064262 - 3065068 + | protein of unknown function DUF1212 Rpal_2819 3065065 - 3065544 + | hypothetical protein Rpal_2820 3065898 - 3065545 - | hypothetical protein TERM 2183 3065670 - 3065658 - G 70 -10.5 -3.68351 | overlap 3065659 CCTGGATCAGCGAAA CCCGG CCG CCGGG ATCGATGCGGAATTT TERM 2184 3066133 - 3066090 - H 71 -11 -3.53012 | gap 1, opp_overlap 3066093 CGCGGCGGCTTGAAA TCCCCCTGAAACACGGTGCTC TGG GGGCATCG-GTATCAGAGGGA TTGCGATGCGGTCAT Rpal_2821 3066139 - 3066591 + | hypothetical protein Rpal_2822 3066862 - 3068145 + | FRG domain protein TERM 2185 3070081 - 3070109 + G 78 -14.6 -3.32022 | gap 1, overlap 3070090 ACCGCGGCGTCTCCG GGCGTGCGGTGCC GGCC GGCGCCG-ACGCC TTCGTCTATGCCGAG TERM 2186 3071667 - 3071624 - g 73 -12.9 -3.30124 | opp_overlap 3071619 3071626 3071666, overlap 3071625 TCTCACCGGCTACAA GCCGCCGGCGCCGGACGTG TATTAT CTCGGCCAGCGCCGGCTGA GCGCGGAGATCCGCG TERM 2187 3071666 - 3071625 - g 77 -16.4 -2.57931 | opp_overlap 3071619 3071626, overlap 3071624 CTCACCGGCTACAAG CCGCCGGCGCCGGACGTG TATTAT CTCGGCCAGCGCCGGCTG AGCGCGGAGATCCGC Rpal_2823 3068568 - 3073781 + | alpha-2-macroglobulin domain protein TERM 2188 3074759 - 3074710 - g 78 -15 -3.28712 | GGTGGCGGCCGACAA GGACGCGCCGCTGATCCGGC-TCA CCCT CGATGCCGG-CCTGCAGCGCGCCC TCGAAACGCTGGCGC Rpal_2824 3073931 - 3075973 + | penicillin-binding protein 1C Rpal_2825 3076024 - 3077769 + | glycosyl transferase family 39 Rpal_2826 3077771 - 3078619 + | phosphoesterase PA-phosphatase related Rpal_2827 3078683 - 3079435 + | glycosyl transferase family 2 Rpal_2828 3079435 - 3079773 + | lipid A biosynthesis domain protein TERM 2189 3080120 - 3080103 - f 77 -12.7 -3.58343 | CTCATGATGTTCAAA GCGCTGC TGCT GCAGCGC TGGTACGGGTTGTCA TERM 2190 3081077 - 3081087 + F 71 -5.4 -4.49981 | TACCTTAATTATGGA CAAG TGC CTTG TTTTCTCGTGCTCTG Rpal_2830 3081136 - 3082335 + | hypothetical protein Rpal_2831 3083612 - 3082416 - | cystathionine beta-lyase TERM 2191 3084099 - 3084112 + G 70 -3.7 -4.56597 | overlap 3084095 TCCTGCGGCGTCAGC CAGGG ACTG CCCGG TTTTTCGGCGCCCGA Rpal_2832 3083934 - 3084995 + | extracellular solute-binding protein family 3 TERM 2192 3085711 - 3085750 + G 72 -7.1 -4.18494 | ACTCGGTCTGCTGAT CGGATTGCCGCTGATCG CATTCC TGATTGTCGGCAAGCCG TTTTCGCTGGAAGTG Rpal_2833 3085016 - 3086221 + | polar amino acid ABC transporter, inner membrane subunit Rpal_2834 3086218 - 3087723 + | polar amino acid ABC transporter, inner membrane subunit Rpal_2835 3087739 - 3088479 + | ABC transporter related Rpal_2836 3088773 - 3088504 - | hypothetical protein Rpal_2837 3089956 - 3088919 - | Pyridoxal-5'-phosphate-dependent protein beta subunit Rpal_2838 3091295 - 3090066 - | Cyclopropane-fatty-acyl-phospholipid synthase Rpal_2839 3092200 - 3091355 - | protein of unknown function DUF1365 Rpal_2840 3093516 - 3092203 - | amine oxidase Rpal_2841 3093951 - 3095399 + | RND efflux system, outer membrane lipoprotein, NodT family TERM 2193 3095448 - 3095481 + G 76 -14.5 -3.21416 | CGGGCGTAAAGGATG GGGCGGGCTGCTGCG GCGA CGCAGCGTCTCGCTC TTACTGGTCGCGCTG TERM 2194 3095576 - 3095544 - g 80 -15.6 -3.25823 | gap 1, overlap 3095547 CGCGGTCCAGACCAA GC-AGGCCGAGCGGC GGAT GCCGCCCGACCTTGC GGTGCCGGTGCTGGC TERM 2195 3095572 - 3095547 - g 79 -16.1 -2.81547 | overlap 3095544 GGTCCAGACCAAGCA GGCCGAGCGGC GGAT GCCGCCCGACC TTGCGGTGCCGGTGC Rpal_2842 3095389 - 3096756 + | efflux transporter, RND family, MFP subunit Rpal_2843 3096827 - 3099958 + | acriflavin resistance protein Rpal_2844 3099958 - 3103065 + | acriflavin resistance protein Rpal_2845 3103073 - 3103804 + | DTW domain containing protein TERM 2196 3103817 - 3103838 + F 71 -13 -3.02043 | opp_overlap 3103796 TGAGGGCGCGAGCCC TCGCCGCG GCCTGA CGCGGCGA TCTTGGCACAGGGTT Rpal_2846 3104217 - 3105686 + | membrane bound O-acyl transferase MBOAT family protein Rpal_2847 3105689 - 3106822 + | alginate O-acetyltransferase AlgJ Rpal_2848 3107019 - 3106843 - | hypothetical protein TERM 2197 3107178 - 3107157 - R 100 -15.1 -5.14563 | opp_overlap 3107157 CTGCCCATGAAAAAA GCCGCCCCA GATG CGGGGCGGC TCAATTCAACGACAT TERM 2198 3107157 - 3107178 + r 74 -14.4 -2.52543 | opp_overlap 3107157 CTGCCCATGAAAAAA GCCGCCCC AGATGC GGGGCGGC TCAATTCAACGACAT Rpal_2849 3107619 - 3107215 - | conserved hypothetical protein; putative signal peptide TERM 2199 3107974 - 3107940 - H 72 -7.9 -4.11216 | gap 1, opp_overlap 3107948 3107967, overlap 3107922 3107943 3107948 GTTCGACGTTGAAAA GCAGAAAACGGTCGAT CCAC ACCGGCCGTTT-CCGC CGCAACGTCGCGGCC TERM 2200 3107967 - 3107948 - H 80 -5.6 -4.67635 | opp_overlap 3107948, overlap 3107943 3107940 TTGAAAAGCAGAAAA CGGTCGAT CCAC ACCGGCCG TTTCCGCCGCAACGT Rpal_2850 3108137 - 3108802 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 2201 3109591 - 3109543 - g 75 -13.8 -3.25823 | gap 1, overlap 3109527 GTTGCGGCAGACCAA CGACCGCTTCAACGTCGGCGAGG TCAC CCGCACCGACGTGGC-GCAGTCG CAGGCGCAGCTTGCC Rpal_2851 3109013 - 3110404 + | type I secretion outer membrane protein, TolC family TERM 2202 3110418 - 3110443 + F 91 -15.4 -3.90112 | overlap 3110405 3110419 GATTGCGGCCGCGAC TGCGCCCGGG ATTCTG CCCGGGCGCG TTTGCTTGCAAACAA TERM 2203 3110419 - 3110442 + F 83 -16.7 -2.93853 | overlap 3110405 3110418 ATTGCGGCCGCGACT GCGCCCGGG ATTCTG CCCGGGCGC GTTTGCTTGCAAACA Rpal_2852 3110697 - 3111473 + | hypothetical protein TERM 2204 3111571 - 3111595 + F 71 -9.3 -3.75402 | gap 1, opp_overlap 3111571, overlap 3111586 AGCGTCGTCCAACGA GCGCGTTCGC GGCCCG GCGA-CGCGC CTTTTTTGATTGCAG TERM 2205 3111586 - 3111596 + F 100 -8.2 -5.26875 | opp_overlap 3111571, overlap 3111571 GCGCGTTCGCGGCCC GGCG ACG CGCC TTTTTTGATTGCAGC Rpal_2853 3111615 - 3114488 + | valyl-tRNA synthetase TERM 2206 3114693 - 3114666 - g 77 -13.4 -3.57144 | opp_overlap 3114675 TTGTCGATCCGCAAA GGCGACAGGCCG GAGC CGGCCTATGGCC GGCACTGGTGCTTCA TERM 2207 3114675 - 3114701 + G 80 -17.2 -2.70932 | opp_overlap 3114666 CGCAAAGGCGACAGG CCGGAGCCGGCC TAT GGCCGGCACTGG TGCTTCAAGGCGACC Rpal_2854 3114492 - 3114878 + | Glyoxalase/bleomycin resistance protein/dioxygenase Rpal_2855 3115074 - 3115640 + | hypothetical protein Rpal_2856 3116485 - 3115865 - | DNA-3-methyladenine glycosylase TERM 2208 3117359 - 3117383 + G 88 -9.9 -4.38712 | overlap 3117360 TGCTGCAGGTGATGG ACGACCTGCGC TCG GCGGAGGTCGA TTTTCTCACCATCGG TERM 2209 3117360 - 3117382 + G 73 -13.4 -3.22906 | overlap 3117359 GCTGCAGGTGATGGA CGACCTGCGC TCG GCGGAGGTCG ATTTTCTCACCATCG Rpal_2857 3116635 - 3117594 + | lipoic acid synthetase Rpal_2858 3117621 - 3118094 + | cyclase/dehydrase TERM 2210 3118150 - 3118191 + T 88 -17.5 -3.06183 | opp_overlap 3118155 3118159, overlap 3118155 3118159 GCGAGGAGCGCAGCG ACGAAGCAATCCAGCTC GATGCACG GAGCTGGATTGCTTCGC TTCCCTCGCAATGAC TERM 2211 3118155 - 3118186 + T 80 -14.6 -3.19192 | opp_overlap 3118155 3118159, overlap 3118150 3118159 GAGCGCAGCGACGAA GCAATCCAGCTC GATGCACG GAGCTGGATTGC TTCGCTTCCCTCGCA TERM 2212 3118186 - 3118155 - T 80 -14.6 -3.18582 | opp_overlap 3118155 3118150 3118159, overlap 3118159 GAGCGCAGCGACGAA GCAATCCAGCTC GATGCACG GAGCTGGATTGC TTCGCTTCCCTCGCA Rpal_2859 3119014 - 3118394 - | CinA domain protein Rpal_2860 3120213 - 3119017 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Rpal_2861 3120487 - 3121488 + | TIM-barrel protein, nifR3 family Rpal_2862 3121485 - 3122657 + | signal transduction histidine kinase, nitrogen specific, NtrB TERM 2213 3123618 - 3123638 + G 81 -3.9 -5.0538 | overlap 3123619 GAGCACATCGAGGAC CTGCCGGAT CTG GTTCGGCAC TTTTTTGCGCTGGCC Rpal_2863 3122667 - 3124109 + | nitrogen metabolism transcriptional regulator, NtrC, Fis Family TERM 2214 3126309 - 3126298 - g 75 -7.2 -4.41348 | GTCTGCCCAAAGAAA GCCG TTCG CGGC TGCTCGAACCCTACG Rpal_2864 3124269 - 3126560 + | multi-sensor signal transduction histidine kinase Rpal_2865 3126577 - 3127944 + | two component, sigma54 specific, transcriptional regulator, Fis family TERM 2215 3128669 - 3128710 + G 74 -9.9 -3.86346 | gap 1 GTGCGGTTCGAGGAG CGAC-CGTTCACGCCGGCCG AAG CGGCCGGCGCCGCCGAGGCG TTTGTGACGGCGTCC Rpal_2866 3127985 - 3128842 + | aminotransferase class IV TERM 2216 3128819 - 3128833 + F 81 -7.1 -4.6971 | CTAAGAGAGCAGTTT CACCG ATTTG CGGTG TTTTCTTAAGCTTTG TERM 2217 3129041 - 3129025 - g 86 -4.4 -5.24129 | gap 1, overlap 3129027 TTGCGGGATAAAAAA TG-GCGG CAGA CCGCGCA CAAAACCTTCAAGAC Rpal_2867 3129024 - 3129272 + | RNA chaperone Hfq Rpal_2868 3129284 - 3130651 + | GTP-binding proten HflX Rpal_2869 3130854 - 3133595 + | DNA gyrase, A subunit TERM 2218 3133721 - 3133686 - T 77 -15.6 -2.63382 | gap 1, opp_overlap 3133691 3133693, overlap 3133691 TCCGACAGCCAGAAT CGAAAGACCCCCGAG GGGGCAA CTCGGGGGTCTT-CG GTACAGAGCGCCCTT TERM 2219 3133717 - 3133691 - T 90 -15.2 -3.81339 | opp_overlap 3133691 3133693, overlap 3133686 CAGCCAGAATCGAAA GACCCCCGAG GGGGCAA CTCGGGGGTC TTCGGTACAGAGCGC TERM 2220 3133691 - 3133717 + T 81 -15.2 -3.05384 | opp_overlap 3133686 3133691, overlap 3133693 CAGCCAGAATCGAAA GACCCCCGAG GGGGCAA CTCGGGGGTC TTCGGTACAGAGCGC Rpal_2870 3134041 - 3133784 - | hypothetical protein TERM 2221 3134165 - 3134179 + H 86 -7.8 -4.70117 | CGGGCAATTCAGGTT TCGTCG CGT CGGCGA TTTGTTTCTTGGCTT Rpal_2871 3134380 - 3134889 + | pantetheine-phosphate adenylyltransferase Rpal_2872 3134906 - 3135469 + | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 2222 3135481 - 3135513 + G 75 -6.8 -4.36914 | ATAGGCGATCCCAAT GCTGCCGCGCCGAC TGAAT GCAGTCGCGGTAGC TTTTCTCGCAGGGGC TERM 2223 3135689 - 3135714 + G 72 -8.9 -4.07568 | TTCACGCGCAGCGGT GAGATCCTCGG CAAG CCGCGGATCAC TTTTGAAAGCCCGGA Rpal_2873 3135479 - 3135922 + | hypothetical protein Rpal_2874 3135898 - 3136365 + | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 2224 3137098 - 3137121 + G 78 -13.8 -3.53091 | opp_overlap 3137089, overlap 3137099 CAACGAGGGCGCAGT CGCAGCCCCG ACCG CGGGGCTGCA TTTCACCGCCGAACT TERM 2225 3137099 - 3137120 + G 80 -17.3 -2.71712 | opp_overlap 3137089, overlap 3137098 AACGAGGGCGCAGTC GCAGCCCCG ACCG CGGGGCTGC ATTTCACCGCCGAAC Rpal_2875 3136535 - 3137617 + | S-adenosylmethionine/tRNA-ribosyltransferase-isomerase Rpal_2876 3137614 - 3138747 + | queuine tRNA-ribosyltransferase TERM 2226 3139725 - 3139695 - T 71 -13.9 -2.62263 | opp_overlap 3139702 ATCTTCTGCAGATCA GCCCGGAGCCGGC CAAGT GCCGGCTCCTTGC CGTTGAGCCACAGAT Rpal_2877 3140448 - 3139825 - | transcriptional regulator, XRE family Rpal_2878 3140771 - 3140445 - | hypothetical protein TERM 2227 3140987 - 3140949 - R 93 -17.4 -3.48276 | overlap 3140951 TGGCTCTCGATACAA GACGTCCGGCATTGCACG AGC CGTGCGATGCCGGACGAG GTGGTCCAACGGGAG TERM 2228 3140985 - 3140951 - R 100 -24.4 -3.31726 | overlap 3140949 GCTCTCGATACAAGA CGTCCGGCATTGCACG AGC CGTGCGATGCCGGACG AGGTGGTCCAACGGG Rpal_2879 3141965 - 3141012 - | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein TERM 2229 3141456 - 3141504 + g 81 -11.1 -4.09685 | gap 3, opp_overlap 3141442 3141443 AGCCGCGGTGCCATC GGCAGG-CGGCAGGTACACCG-CG GTCA CGTCGGTGAAC-TGCAGGCCTGCC TTTTCGAGAATGGCG Rpal_2880 3142696 - 3142127 - | flavin reductase domain protein FMN-binding Rpal_2881 3143549 - 3142707 - | ABC transporter related Rpal_2882 3144363 - 3143557 - | binding-protein-dependent transport systems inner membrane component Rpal_2883 3145535 - 3144360 - | Alkanesulfonate monooxygenase Rpal_2884 3146527 - 3145580 - | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Rpal_2885 3146974 - 3148191 + | Radical SAM domain protein Rpal_2886 3148233 - 3149105 + | Nitrogenase Rpal_2887 3149107 - 3150465 + | oxidoreductase/nitrogenase component 1 Rpal_2888 3150465 - 3151712 + | oxidoreductase/nitrogenase component 1 Rpal_2889 3152860 - 3151874 - | extracellular solute-binding protein family 3 TERM 2230 3152393 - 3152380 - G 75 -9.5 -4.05788 | opp_overlap 3152379 3152382 TGTCGTTAAAGGAAA GGCCG GCTT CGGCC AGTTGCTTGTAGAGA Rpal_2890 3153193 - 3154797 + | glucose-methanol-choline oxidoreductase Rpal_2891 3155213 - 3154887 - | hypothetical protein Rpal_2892 3155754 - 3155245 - | OsmC family protein Rpal_2893 3156562 - 3155783 - | ABC transporter related TERM 2231 3156298 - 3156284 - G 79 -11.4 -3.83026 | CTGTTCGAGACCAAA GCCGAC GTT GTCGGC GACGCTCAGCCATGG TERM 2232 3156432 - 3156388 - G 70 -11.4 -3.40403 | gap 1 CGCCGTCCAGCACAA TGGTGCCGGCGGTCGCCCGAT CGAG ACCGG-CGATCGCCCGCAGCA AGGTCGACTTGCCGC Rpal_2894 3157404 - 3156562 - | binding-protein-dependent transport systems inner membrane component Rpal_2895 3158502 - 3157528 - | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Rpal_2896 3160260 - 3159052 - | Cystathionine gamma-synthase TERM 2233 3159229 - 3159276 + g 73 -14 -3.14564 | opp_overlap 3159255 3159258 CAGCAGGCTCTTGGT CTTGCCGAGCGAGACCGCGTAG GAGA CGACGCGCATCCGCTCGGCGAG TTGCTCGGCCAATGC Rpal_2897 3161534 - 3160500 - | alpha/beta hydrolase fold Rpal_2898 3161953 - 3163614 + | Carboxylesterase type B Rpal_2899 3163646 - 3164668 + | extracellular solute-binding protein family 3 Rpal_2900 3164687 - 3165856 + | binding-protein-dependent transport systems inner membrane component Rpal_2901 3165853 - 3166941 + | polar amino acid ABC transporter, inner membrane subunit Rpal_2902 3167488 - 3168516 + | ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein Rpal_2903 3168527 - 3169525 + | binding-protein-dependent transport systems inner membrane component Rpal_2904 3169525 - 3170337 + | ABC transporter related Rpal_2905 3170384 - 3170626 + | hypothetical protein Rpal_2906 3171186 - 3172076 + | Radical SAM domain protein Rpal_2907 3172115 - 3172984 + | nitrogenase iron protein Rpal_2908 3173050 - 3174558 + | Nitrogenase Rpal_2909 3174570 - 3175952 + | Nitrogenase Rpal_2910 3176247 - 3177551 + | FAD dependent oxidoreductase TERM 2234 3177582 - 3177598 + T 76 -13.7 -3.24021 | opp_overlap 3177544 3177577, overlap 3177577 3177575 3177565 CGCGGAAGAACCTCT TCGGCCG CGC CGGCCGA TTACGTCTTTGCGAC Rpal_2911 3178084 - 3177599 - | L-2-amino-thiazoline-4-carboxylic acid hydrolase Rpal_2912 3178803 - 3178081 - | isochorismatase hydrolase TERM 2235 3178151 - 3178166 + g 82 -6 -4.71426 | GGACTCTCGGCGACC GCGCCG AACA CGCCGC TTTTCTTGATCAGCA Rpal_2913 3180401 - 3178800 - | extracellular solute-binding protein family 5 TERM 2236 3179195 - 3179172 - G 75 -3 -4.83615 | gap 1, overlap 3179173 3179174 CACGTCGGACAAAAA GCCG-GCCGCA TCA CGCGGCACGAT CTCGACCTGAATGCC Rpal_2914 3180627 - 3181517 + | transcriptional regulator, LysR family Rpal_2915 3183200 - 3181578 - | ABC transporter related TERM 2237 3183138 - 3183167 + g 83 -13.6 -3.86897 | gap 1, overlap 3183135 CACGGCATGGCTGCG GTCGGCG-CCGGC GGGCA GCCGGACGCTGAC TTTGTCGAGCGTGAG Rpal_2916 3184027 - 3183197 - | binding-protein-dependent transport systems inner membrane component Rpal_2917 3185008 - 3184031 - | binding-protein-dependent transport systems inner membrane component Rpal_2918 3186649 - 3185033 - | extracellular solute-binding protein family 5 Rpal_2919 3187985 - 3186819 - | amidohydrolase TERM 2238 3188034 - 3188080 + r 75 -12.4 -3.53811 | gap 3 CCGATGAATTCGAGC GGCGCGCCG-TG-CGACAGCTTG ATAT CGAGC-GTCGTCGGTGGCGCGCC TTTCAGACCGATCGC Rpal_2920 3188797 - 3188015 - | hypothetical protein Rpal_2921 3189467 - 3189252 - | hypothetical protein Rpal_2922 3189894 - 3190139 + | hypothetical protein Rpal_2923 3191026 - 3190136 - | protein of unknown function DUF6 transmembrane Rpal_2924 3191216 - 3191617 + | Endoribonuclease L-PSP Rpal_2925 3191708 - 3191911 + | hypothetical protein TERM 2239 3191992 - 3191971 - T 100 -15.1 -4.54727 | TCCCCCAAACGAAAA CCGGGCCCC TTTC GGAGCCCGG TTCGGCAATACAGCT Rpal_2926 3192204 - 3192025 - | antenna complex alpha/beta subunit Rpal_2927 3192373 - 3192230 - | antenna complex alpha/beta subunit Rpal_2928 3195796 - 3192962 - | glycosyl transferase family 2 TERM 2240 3193881 - 3193910 + g 79 -11.5 -3.76048 | gap 1, overlap 3193882 GCTGCGCGGCGGATC AGGCA-CATCGTGC CGT GCACGATGATGCCG TTGTATTCGTTGCGC TERM 2241 3193882 - 3193909 + g 73 -15 -2.85147 | gap 1, overlap 3193881 CTGCGCGGCGGATCA GGCA-CATCGTGC CGT GCACGATGATGCC GTTGTATTCGTTGCG Rpal_2929 3196562 - 3195984 - | hypothetical protein Rpal_2930 3196849 - 3198459 + | putative beta (1-6) glucans synthase, NdvC-like protein Rpal_2931 3198799 - 3198419 - | hypothetical protein TERM 2242 3198778 - 3198788 + g 83 -2.4 -5.1356 | opp_overlap 3198778, overlap 3198772 CCTGATACGGAGTAA GGCG GAA CGGC TTTTTCTTCATAGCG Rpal_2932 3200264 - 3198873 - | Sporulation domain protein TERM 2243 3199143 - 3199179 + g 81 -8.6 -4.46615 | gap 1 GGCGGCGTCCGCGAT CGGCCCCGCGA-CCAGC CGCA GCTGGGTGGCGTTGCCG TTTTCCTTGATCATG Rpal_2933 3200432 - 3201790 + | UDP-N-acetylglucosamine pyrophosphorylase Rpal_2934 3201917 - 3203743 + | glucosamine/fructose-6-phosphate aminotransferase, isomerizing TERM 2244 3203889 - 3203920 + F 74 -11.6 -3.40403 | gap 1 GAACGCCGAAGTGGC GCGATCGAACCTGGC CGG GTC-GGATCGATCGC TTATCCTCAGGGCGG Rpal_2935 3204001 - 3204804 + | protein of unknown function DUF502 Rpal_2936 3206937 - 3204835 - | DEAD/DEAH box helicase domain protein TERM 2245 3205179 - 3205237 + g 70 -6.5 -4.18494 | overlap 3205180 AGGTGGAGGCTTCGC TGCCGCGACCGATCCGCC-CGCGCAGCTG ATG CAACTGCGCCAGGCCGAACCG-CTCGGCG TTTTCGATCACCATG TERM 2246 3207050 - 3207066 + H 84 -10.8 -4.19506 | opp_overlap 3207047 GGCTATATCAAACGC GCCCGG CACGT CCGGGC TTTTGGCGTTGAGGT Rpal_2937 3207092 - 3207382 + | protein of unknown function DUF339 Rpal_2938 3207379 - 3210897 + | transcription-repair coupling factor TERM 2247 3210952 - 3210999 + T 79 -13.6 -3.41051 | opp_overlap 3210958 3210962, overlap 3210958 CGAGGAGGCGAAGCC GACGAAGCAATCCAGAGACT GTGTATGG AGCCTCTGGATTGCTTTGCC TTCTGCTCGCAATGA TERM 2248 3210958 - 3210993 + T 78 -12 -3.82083 | opp_overlap 3210958 3210962, overlap 3210952 GGCGAAGCCGACGAA GCAATCCAGAGACT GTGTATGG AGCCTCTGGATTGC TTTGCCTTCTGCTCG TERM 2249 3210993 - 3210958 - T 80 -14.2 -3.18681 | opp_overlap 3210958 3210952, overlap 3210962 GGCGAAGCCGACGAA GCAATCCAGAGACT GTGTATGG AGCCTCTGGATTGC TTTGCCTTCTGCTCG Rpal_2939 3212273 - 3211041 - | putative diguanylate cyclase Rpal_2940 3213857 - 3212322 - | putative acid-CoA ligase Rpal_2941 3215742 - 3213862 - | extracellular solute-binding protein family 5 TERM 2250 3216159 - 3216114 - g 70 -10.9 -3.53343 | opp_overlap 3216114, overlap 3216117 AAGGCGGCGCCGAAA GCAGCCCCGGCGCCGGCGC AGCAGCAG GCTCCTGCGCCCGAGCAGC AGCAGGTTCAGTTGA Rpal_2942 3215961 - 3216707 + | Invasion associated locus B family protein TERM 2251 3216729 - 3216759 + T 70 -13.3 -2.95896 | opp_overlap 3216735, overlap 3216735 ACCGCGATCGCGAAA CGCAAAGGGCGCC CCAGT GGCGCCCTTTCTG CTTTCTGCATACTCG TERM 2252 3216735 - 3216753 + T 89 -13.1 -4.17701 | opp_overlap 3216735, overlap 3216729 ATCGCGAAACGCAAA GGGCGCC CCAGT GGCGCCC TTTCTGCTTTCTGCA TERM 2253 3216753 - 3216735 - T 83 -13.1 -3.84719 | opp_overlap 3216729 3216735 ATCGCGAAACGCAAA GGGCGCC CCAGT GGCGCCC TTTCTGCTTTCTGCA Rpal_2943 3217362 - 3216793 - | hypothetical protein Rpal_2944 3217843 - 3217511 - | hemimethylated DNA binding protein TERM 2254 3218858 - 3218878 + G 74 -15.5 -2.65264 | TCGGCACCTTCGTGT CGGTGGTGA CGC TCACCACCG TGATGTGGCTGATCC Rpal_2945 3217966 - 3218922 + | Auxin Efflux Carrier Rpal_2946 3220125 - 3218929 - | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Rpal_2947 3220259 - 3220993 + | Phosphatidylcholine synthase Rpal_2948 3220990 - 3221712 + | Integral membrane protein TerC TERM 2255 3221996 - 3221957 - g 71 -12.8 -3.28924 | opp_overlap 3221948 3221962, overlap 3221958 CACCGGCCTCTACAA GGCGCCGTCGCTGCCG TTCGTCGC CGGCAACGAGGGCGCG GGTGAGGTGGTGTCG TERM 2256 3221995 - 3221958 - g 77 -16.3 -2.57211 | opp_overlap 3221948 3221962, overlap 3221957 ACCGGCCTCTACAAG GCGCCGTCGCTGCCG TTCGTCGC CGGCAACGAGGGCGC GGGTGAGGTGGTGTC Rpal_2949 3221799 - 3222773 + | Alcohol dehydrogenase zinc-binding domain protein Rpal_2950 3224277 - 3222952 - | MiaB-like tRNA modifying enzyme YliG Rpal_2951 3225590 - 3224676 - | transcriptional regulator, LysR family Rpal_2952 3225692 - 3226648 + | NMT1/THI5 like domain protein TERM 2257 3226736 - 3226713 - g 74 -15.3 -2.56164 | overlap 3226712 CCCGCAATCACCAAG GCTGCCGCG ACCGTA CGCGGCAGC ACCAGACAGTTCGCC Rpal_2953 3226656 - 3227540 + | binding-protein-dependent transport systems inner membrane component Rpal_2954 3227533 - 3228351 + | ABC transporter related Rpal_2955 3228353 - 3229204 + | hypothetical protein Rpal_2956 3229985 - 3229221 - | LamB/YcsF family protein TERM 2258 3229317 - 3229341 + g 73 -14.3 -3.18681 | TTTGGTGTCGCCGTG GATGCACACCG TGT CGGTGCGCATC TTGATCACCTTGCCG Rpal_2957 3231023 - 3230013 - | urea amidolyase related protein Rpal_2958 3231748 - 3231020 - | Allophanate hydrolase subunit 1 Rpal_2959 3231969 - 3232682 + | Dimethylmenaquinone methyltransferase Rpal_2960 3232695 - 3233102 + | Cupin 2 conserved barrel domain protein Rpal_2961 3233234 - 3234124 + | dihydrodipicolinate synthase Rpal_2962 3234135 - 3234614 + | large conductance mechanosensitive channel protein TERM 2259 3234635 - 3234593 - f 100 -15.5 -4.57569 | gap 1, overlap 3234594 GGATTTGTTGAAAAA GGGCGCCG-GCCCGTCGCCA TAGG CGGCGACGAGCACCGCGCCG ACAGGAATCGCCACC TERM 2260 3234634 - 3234594 - f 93 -19 -3.3422 | gap 1, overlap 3234593 GATTTGTTGAAAAAG GGCGCCG-GCCCGTCGCCA TAGG CGGCGACGAGCACCGCGCC GACAGGAATCGCCAC Rpal_2963 3234652 - 3235125 + | SsrA-binding protein Rpal_2964 3235148 - 3235726 + | Redoxin domain protein TERM 2261 3235763 - 3235802 + T 74 -14.4 -2.60723 | opp_overlap 3235767, overlap 3235762 CGACGAGCGTCGCGA CGAAGCAATCCATGCTTT ACGT ATGGCCTGGATTGCTTCG CTTCGTTCGCAATGA Rpal_2965 3236513 - 3235839 - | Uracil-DNA glycosylase superfamily Rpal_2966 3237169 - 3236519 - | protein of unknown function DUF88 TERM 2262 3237303 - 3237313 + H 81 -4 -4.99043 | ACGAAGCATCAGCCG GTAT TCT ATAC TTTTCTTTCTGAAAA Rpal_2967 3237516 - 3237908 + | DNA-directed RNA polymerase, omega subunit TERM 2263 3237951 - 3237973 + F 100 -12.7 -5.93252 | opp_overlap 3237951 TGATGCTCTGCAAAA CGGCTCGGA TCACT TCCGGGCCG TTTTTTGTTTTTGGA TERM 2264 3237973 - 3237951 - f 78 -10.5 -4.08216 | opp_overlap 3237951 TGATGCTCTGCAAAA CGGCTCGGA TCACT TCCGGGCCG TTTTTTGTTTTTGGA TERM 2265 3238139 - 3238124 - f 76 -10.4 -3.90112 | GCGGGCGCAATTAAA GCTCCG ATGG CGGAGC CATCGCCTCGCTGCA Rpal_2968 3238174 - 3240456 + | (p)ppGpp synthetase I, SpoT/RelA Rpal_2969 3240606 - 3241370 + | pyridoxal phosphate biosynthetic protein PdxJ Rpal_2970 3241367 - 3241807 + | holo-acyl-carrier-protein synthase Rpal_2971 3242049 - 3242807 + | signal peptidase I Rpal_2972 3242804 - 3243622 + | Ribonuclease III TERM 2266 3243640 - 3243658 + G 81 -11.6 -3.92178 | opp_overlap 3243632 3243630 ATGAAGACGCGGCGA CCGCCGCG ACC CGCTGCGG TTTCGTTGCGCTGAT Rpal_2973 3243615 - 3244538 + | GTP-binding protein Era Rpal_2974 3244535 - 3244936 + | hypothetical protein Rpal_2975 3244979 - 3245731 + | DNA repair protein RecO Rpal_2976 3246640 - 3245771 - | NmrA family protein Rpal_2977 3246723 - 3247235 + | transcriptional regulator, HxlR family Rpal_2978 3247245 - 3249506 + | DNA topoisomerase IV, A subunit TERM 2267 3249507 - 3249547 + F 71 -8.2 -3.86311 | opp_overlap 3249485 3249486, overlap 3249511 3249511 CGTAGCATCGCATGA TGCTCG-CCCGCCTGCGCGC TAT GT-CGCAGGCGGGCCGTTCG TTTGGCTTTGCGTCT TERM 2268 3249511 - 3249542 + F 75 -14.4 -2.74853 | gap 1, opp_overlap 3249485 3249486, overlap 3249511 3249507 GCATCGCATGATGCT CGCCCGCCTGCGCGC TAT GT-CGCAGGCGGGCC GTTCGTTTGGCTTTG TERM 2269 3249511 - 3249543 + F 85 -14.2 -3.59293 | opp_overlap 3249485 3249486, overlap 3249507 3249511 GCATCGCATGATGCT CG-CCCGCCTGCGCGC TAT GT-CGCAGGCGGGCCG TTCGTTTGGCTTTGC TERM 2270 3250905 - 3250926 + G 70 -10.1 -3.65046 | opp_overlap 3250917 CGCCATCGCCACCGA GCGCGGCAT CAAG ATGCCGGGC TTCTTCGGCTACGCG Rpal_2979 3249592 - 3251022 + | Citrate transporter Rpal_2980 3251233 - 3251036 - | hypothetical protein TERM 2271 3251301 - 3251277 - H 84 -10.8 -4.1466 | gap 1, overlap 3251268 ACGCAAGCCGGAAAA TCGCGGCAGGA CCGA TCCTG-CGCGA GAAACCGTACGGTCG Rpal_2981 3251507 - 3252859 + | Mn2+/Fe2+ transporter, NRAMP family Rpal_2982 3253740 - 3252919 - | transcriptional regulator, AraC family Rpal_2983 3253847 - 3255940 + | Fusaric acid resistance protein conserved region Rpal_2984 3255930 - 3256145 + | protein of unknown function DUF1656 Rpal_2985 3256142 - 3257044 + | secretion protein HlyD family protein Rpal_2986 3257912 - 3257136 - | Arginyltransferase Rpal_2987 3258508 - 3257981 - | RDD domain containing protein TERM 2272 3258642 - 3258602 - R 100 -26.3 -4.0162 | GCGCGACATTACAAA CCCTCCATTGATCCGCCGG AGA CCGGCGAATCGATGGAGGG TTGAAACAAGCGAGG Rpal_2988 3259718 - 3258666 - | Porphobilinogen synthase Rpal_2989 3259912 - 3260376 + | putative membrane protein of unknown function Rpal_2990 3260454 - 3262019 + | AMP-dependent synthetase and ligase TERM 2273 3262084 - 3262044 - f 76 -11.1 -3.74693 | opp_overlap 3262071 3262078 CGGCATTTTACGAAA CGCGGTCCGGATAGGGT TGTGAAG ACCTTAACCGGATCGCG GACGGTCCGGCGGAT Rpal_2991 3262372 - 3262890 + | transcriptional regulator, MarR family TERM 2274 3262991 - 3263015 + F 100 -17.2 -4.41348 | CAGACCTGTCGTCCT TCGGCCTCCC CACAA GGGAGGCCGA TTTGTTTGCGCCGCC Rpal_2992 3263104 - 3263331 + | hypothetical protein Rpal_2993 3263348 - 3263563 + | hypothetical protein TERM 2275 3264012 - 3264039 + G 79 -11.3 -3.97947 | opp_overlap 3264011 3264010 GCAGATCAAGGAATT CCGCCGCATGA TCGCGC TGATGCGGCGG TTTATGCTGCATCCG Rpal_2994 3263578 - 3264144 + | hypothetical protein Rpal_2995 3264200 - 3264601 + | globin Rpal_2996 3265621 - 3264749 - | Glutathione S-transferase domain Rpal_2997 3265888 - 3266094 + | hypothetical protein Rpal_2998 3266280 - 3267332 + | hypothetical protein Rpal_2999 3267335 - 3268054 + | Methyltransferase type 11 TERM 2276 3268572 - 3268586 + T 73 -7.1 -4.30014 | overlap 3268573 GCGTCAGCTCTAGCA TCGCG CCGGA CGCGA TTTTCACTTGCTCCG Rpal_3002 3269862 - 3269581 - | plasmid stabilization system Rpal_3003 3270146 - 3269859 - | hypothetical protein TERM 2277 3271242 - 3271218 - g 73 -12.7 -3.38272 | GACGACGACTCACAA GTCGCTGCGCG GCC CGCGCGGCGGC CTGATCCTCACCAAC Rpal_3004 3270499 - 3271797 + | Glycine hydroxymethyltransferase TERM 2278 3271978 - 3271946 - g 100 -21.3 -2.91274 | CCCAGGTGAAGGATA GCCGGCCCACCGAGG ATT CCTCGGTGATCCGGC GCCGGCGGGTGTGCA Rpal_3005 3271900 - 3272382 + | ATP-cone domain protein Rpal_3006 3272379 - 3273548 + | riboflavin biosynthesis protein RibD Rpal_3007 3273559 - 3274167 + | riboflavin synthase, alpha subunit Rpal_3008 3274297 - 3274788 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 2279 3274895 - 3274854 - g 70 -10.7 -3.59087 | gap 1, overlap 3274846 AAGATGACGCCGAAA GGCGAGCGCAAGGCGAACCG GCG CGGCGCGGCGCG-GCTCGCC GCTGTGCAGGCGCTG Rpal_3009 3274794 - 3275318 + | NusB antitermination factor Rpal_3010 3275433 - 3276176 + | hypothetical protein Rpal_3011 3276298 - 3277269 + | thiamine-monophosphate kinase Rpal_3012 3277500 - 3279620 + | V-type H(+)-translocating pyrophosphatase TERM 2280 3279649 - 3279672 + F 100 -21 -4.54727 | opp_overlap 3279649 TTGGTCCAACACAAA GCCCCGCGGC GTAA GCCGCGGGGC TTTTGCTTTGAAACC TERM 2281 3279672 - 3279649 - f 100 -21 -4.1891 | opp_overlap 3279649 TTGGTCCAACACAAA GCCCCGCGGC GTAA GCCGCGGGGC TTTTGCTTTGAAACC Rpal_3013 3279783 - 3280025 + | hypothetical protein TERM 2282 3280059 - 3280078 + F 100 -16.4 -4.56597 | opp_overlap 3280059 TTGACCGCCCAAAAA GCCCGCGG CAGG CCGCGGGC TTTTTGCAGCAAGCA TERM 2283 3280078 - 3280059 - f 100 -16.4 -4.58395 | opp_overlap 3280059 TTGACCGCCCAAAAA GCCCGCGG CAGG CCGCGGGC TTTTTGCAGCAAGCA Rpal_3014 3280300 - 3280458 + | hypothetical protein TERM 2284 3280465 - 3280453 - f 76 -6.3 -4.46976 | ATCAACAAAGACAAA TCCTA GTG TAGGA TCGGCCATCGCATGG Rpal_3015 3280494 - 3281357 + | alpha/beta hydrolase fold Rpal_3016 3281913 - 3281428 - | SmpA/OmlA domain protein TERM 2285 3281874 - 3281864 - G 70 -2.4 -4.65895 | CGCGGCAGCGAAAAA CGGC TTC GCAG CGCGTTGGCGCGCCC TERM 2286 3282488 - 3282537 + G 81 -14.9 -3.53012 | gap 1, opp_overlap 3282516 TCGGGCAGGTGATCG CGGC-GCTCGACGCGGTGCCGC CAGCCAA GCTGCGCAGCGGCGAGCTGCCG TTTCCGCAGCCGACC Rpal_3017 3282022 - 3282558 + | Ubiquinol-cytochrome C chaperone Rpal_3018 3282576 - 3283142 + | hypothetical protein TERM 2287 3283163 - 3283137 - f 84 -10.8 -4.20918 | CGGAAGCCGAAGAAA GGCTGAGCGTAC AGC GTCCGCCCAACC GCCGCGGACGCGGCC TERM 2288 3283284 - 3283301 + F 70 -7.7 -4.07568 | opp_overlap 3283282 TGTCCGGCCAAATCG GTGTGCA GCGC TGCACGC TTTTCACCGCCCCGA TERM 2289 3283310 - 3283322 + F 100 -10.5 -5.47218 | TGCACGCTTTTCACC GCCCC GAC GGGGC TTTTTTTGAGTCCAC Rpal_3019 3283383 - 3284444 + | fatty acid/phospholipid synthesis protein PlsX Rpal_3020 3284441 - 3285418 + | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 2290 3285915 - 3285881 - g 74 -7.6 -4.28762 | overlap 3285883 AGAATCTGACGAAAA CACCGCGCAATCCGCC TCC GGCGGCTGACGGGGAG CTGGCCTTTGGACAA Rpal_3021 3285552 - 3285908 + | integration host factor, alpha subunit Rpal_3022 3285923 - 3286675 + | transcriptional regulator, MerR family Rpal_3023 3287328 - 3287119 - | hypothetical protein Rpal_3024 3287492 - 3287325 - | hypothetical protein Rpal_3025 3288544 - 3287489 - | integrase family protein TERM 2291 3288491 - 3288529 + gr 79 -6.8 -4.63486 | gap 1, opp_overlap 3288477 3288474, overlap 3288492 ATCAGCGAGCTTCAT TGCAACCCGCTTGATGC CTTTGA GC-TTAAGCGGCTTGCG TTTTATTCGCGGCAT Rpal_3026 3288761 - 3288516 - | hypothetical protein Rpal_3027 3289210 - 3288758 - | hypothetical protein Rpal_3028 3289610 - 3289212 - | hypothetical protein TERM 2292 3289261 - 3289282 + g 76 -6.5 -4.46656 | gap 1, overlap 3289275 GCCCTGCGCTGCGGG GCGGCCGGCT CGA AGCCG-CGGC TTTTGATCTTCTGGC Rpal_3029 3289858 - 3289607 - | hypothetical protein Rpal_3030 3290271 - 3289855 - | NinB family protein Rpal_3031 3290873 - 3290268 - | heat shock protein DnaJ domain protein Rpal_3032 3291714 - 3291088 - | Exonuclease, phage-type TERM 2293 3291280 - 3291294 + g 72 -7 -4.23674 | CGTTAGCCAAAGTGC GCCCTG AAC CTGGGC TTTGTGTTCCTCCGG Rpal_3033 3292738 - 3291725 - | hypothetical protein TERM 2294 3292435 - 3292452 + g 70 -2.5 -4.66163 | overlap 3292427 3292426 CTCCCTTGAGGGCGT CCAGGCG GTCG CGCACGG TTTTTCGCTCGGCGT Rpal_3034 3293534 - 3292743 - | ERF family protein Rpal_3035 3293662 - 3293534 - | hypothetical protein Rpal_3036 3294084 - 3293782 - | hypothetical protein Rpal_3037 3294194 - 3294081 - | hypothetical protein Rpal_3038 3294376 - 3294191 - | hypothetical protein Rpal_3039 3294498 - 3294373 - | hypothetical protein Rpal_3040 3294725 - 3294504 - | hypothetical protein Rpal_3041 3294838 - 3294722 - | hypothetical protein Rpal_3042 3295150 - 3294854 - | hypothetical protein TERM 2295 3295236 - 3295211 - R 82 -5.5 -4.89477 | gap 1 CTGTCAATAAGAAAA GTTATCG-CGCA CGA CGCGGCAATAAC CACGGCCAGGGGGCG Rpal_3043 3295378 - 3295280 - | hypothetical protein Rpal_3044 3296187 - 3295393 - | putative phage repressor Rpal_3045 3296316 - 3296417 + | hypothetical protein Rpal_3046 3296414 - 3296788 + | hypothetical protein Rpal_3047 3296936 - 3297316 + | hypothetical protein TERM 2296 3297347 - 3297322 - f 78 -4.6 -4.67982 | overlap 3297323 CGGCATCTAACAAAA GTCCTGCACG TGGGGG CGTGCGGGAT GCTGACTGAAACTCA TERM 2297 3297429 - 3297486 + G 72 -13.4 -3.14564 | gap 3, opp_overlap 3297415 AGCCGCGGCGCTCGC GCCGGCCGTCGCCGCTG-CGGCGC--CGA CGA TCGATGCGCCGGCAGTGGTGCCGGCGGCC TTGCTCCCCGCGTCG TERM 2298 3297712 - 3297728 + G 86 -6.5 -5.02074 | TGTCCGCATTTGAGC CTGCCGG CCA TCGGTAG TTTTTTCGGCGGTCG Rpal_3048 3297346 - 3298215 + | Chromosomal replication initiator DnaA domain Rpal_3049 3298216 - 3298410 + | hypothetical protein Rpal_3050 3298410 - 3299045 + | hypothetical protein Rpal_3051 3299042 - 3299242 + | hypothetical protein Rpal_3052 3299297 - 3300208 + | hypothetical protein TERM 2299 3300382 - 3300422 + F 100 -24.1 -3.14564 | GGGGTGGGGGCTCGG CGAGGCCCGGTGCAGCG TTCACGC CGCTGTGCCGGGCCTCG TTCGTAAAGGGGTGA Rpal_3053 3300656 - 3301144 + | hypothetical protein Rpal_3054 3301147 - 3301314 + | hypothetical protein Rpal_3055 3301321 - 3301824 + | bacteriophage packaging protein GP3-like protein TERM 2300 3302986 - 3302968 - g 73 -6 -4.30576 | overlap 3302977 CTGGTACCACGAAAA GCGATC GAACGAT GATCGC AACATCGGCCTCGGC Rpal_3056 3301883 - 3303148 + | phage terminase, large subunit, PBSX family Rpal_3057 3303145 - 3303765 + | hypothetical protein TERM 2301 3303999 - 3303973 - g 70 -6.4 -4.19177 | opp_overlap 3303987 3303994 ACTGCGGAAGACAAA CAGGCGCTGCAA GAT CTTCGGCGCCCG GTGGTGATCTTTAAC TERM 2302 3305274 - 3305254 - g 70 -11.1 -3.59979 | opp_overlap 3305240 3305259 CGGCGCTATCGGAAA GAGCAGGGC CGC GTCCTGCTC TACCTGATCGAGAAC Rpal_3058 3303769 - 3305973 + | hypothetical protein Rpal_3059 3305977 - 3306396 + | hypothetical protein Rpal_3060 3306403 - 3307422 + | hypothetical protein TERM 2303 3308047 - 3308000 - g 75 -9 -4.11751 | gap 1, opp_overlap 3308014, overlap 3308003 AGCAACTCGCCAAAA TCACGCGCACCGTTCCGCCGCCC GTC GATCGGCG-AACGGCGCCGGTGT TGCGGCCCCTGGCGC TERM 2304 3308154 - 3308116 - g 70 -2.3 -4.65895 | gap 2, overlap 3308119 3308120 GCGGCCATCCAAAAA CAACGCACGGACGCCGCTG TGG CCGCGGCG-C-GTGCAGCA CGAAAGAGGCGGGAC TERM 2305 3308151 - 3308119 - g 81 -8.4 -4.44608 | gap 2, overlap 3308116 3308120 GCCATCCAAAAACAA CGCACGGACGCCGCTG TGG CCGCGGCG-C-GTGCA GCACGAAAGAGGCGG Rpal_3061 3307423 - 3308199 + | hypothetical protein Rpal_3062 3308274 - 3309239 + | hypothetical protein Rpal_3063 3309418 - 3310485 + | hypothetical protein TERM 2306 3310493 - 3310519 + F 84 -17.3 -2.82023 | overlap 3310485 3310491 CCCACTGAGGCGTCG TGGCGGCGCCA TGATC TGGCGCCGCCG TCCTTCCTCTCGCTC Rpal_3064 3310558 - 3310959 + | hypothetical protein TERM 2307 3310989 - 3311030 + F 85 -14.4 -3.54741 | gap 1, overlap 3310989 CTTGGCTCCACTTCG C-GTGGGCGGCTGCTGTTC TGAGC GATCAGCCGCCGCCCGCAG TTTCAACCCATCCTG TERM 2308 3310989 - 3311029 + F 75 -14.6 -2.7263 | overlap 3310989 CTTGGCTCCACTTCG CGTGGGCGGCTGCTGTTC TGAGC GATCAGCCGCCGCCCGCA GTTTCAACCCATCCT Rpal_3065 3311064 - 3311702 + | hypothetical protein TERM 2309 3312104 - 3312151 + G 72 -5.5 -4.35483 | gap 1, overlap 3312135 3312148 TCTGCTTTCGCCGAT CTGGCCGGCAATCCGCCGCA GGCGCGATA TGCGG-GCGTCGTCGGCCGG TTTGTTGTGCTGACC TERM 2310 3312973 - 3312941 - g 70 -8.4 -3.91897 | gap 2, opp_overlap 3312940 CGGGTGAGCGAGAAA CGCGGTGTGCGTCCGG TGT CCG-ACGCGC-CCACG ATCTATGCCTCTGCA Rpal_3066 3311702 - 3313180 + | hypothetical protein Rpal_3067 3313177 - 3313491 + | hypothetical protein Rpal_3068 3313484 - 3313885 + | hypothetical protein Rpal_3069 3313885 - 3314754 + | hypothetical protein TERM 2311 3316067 - 3316049 - g 77 -5.3 -4.62069 | gap 1, overlap 3316034 3316050 TCCTCACCGGAAAAA TGCCGCGT GAGG ACGCG-CA GCCGCTTACCGCTAC Rpal_3070 3314758 - 3316623 + | hypothetical protein Rpal_3071 3316623 - 3318791 + | hypothetical protein TERM 2312 3319516 - 3319478 - f 100 -14.6 -4.60949 | overlap 3319481 GATACCAGAAATAAA TCAGGCCGCCAAGGTGCT TCC AACACCCTGACGGCCCTA ACCCGAACCAAGGAT TERM 2313 3319513 - 3319481 - f 91 -18.5 -3.23101 | overlap 3319478 ACCAGAAATAAATCA GGCCGCCAAGGTGCT TCC AACACCCTGACGGCC CTAACCCGAACCAAG TERM 2314 3319612 - 3319594 - g 71 -3 -4.68593 | overlap 3319595 TCCAGCACGGAAAAA GCTTCCGG GAT CTGGAAGG CGACATTTACGACCT Rpal_3072 3319539 - 3319793 + | hypothetical protein TERM 2315 3320195 - 3320173 - g 89 -10.6 -4.26076 | GGACGTGGATGAAAA GGGTATGTGC CCT GTACATACCC CTGGCGGCGAGCAGG Rpal_3073 3320015 - 3320827 + | prophage antirepressor Rpal_3074 3320836 - 3321549 + | hypothetical protein Rpal_3075 3321546 - 3322526 + | putative phage tail collar domain Rpal_3076 3322561 - 3322779 + | hypothetical protein Rpal_3077 3322779 - 3323312 + | glycoside hydrolase family 24 TERM 2316 3323426 - 3323460 + G 85 -17.9 -2.64933 | gap 1, opp_overlap 3323423 GCTGGTGAAGTATCT GCCG-GCGATCGGGGC TTAC GTCCCGGTCGCTCGGC TCGTCTCGATCGCTC Rpal_3078 3323316 - 3323783 + | hypothetical protein Rpal_3079 3323788 - 3323979 + | hypothetical protein Rpal_3080 3323976 - 3324392 + | hypothetical protein TERM 2317 3324416 - 3324446 + T 91 -12 -4.30719 | gap 1, overlap 3324417 CCCTTCCTCCCTGAC T-GGCCGTCGATC ATGGCC GATCGACGGCCTA TTTCTTGTCAGCGCC TERM 2318 3324417 - 3324444 + T 100 -17.1 -3.75817 | overlap 3324416 CCTTCCTCCCTGACT GGCCGTCGATC ATGGCC GATCGACGGCC TATTTCTTGTCAGCG TERM 2319 3324459 - 3324488 + T 79 -11.4 -3.92659 | gap 1, overlap 3324452 3324460 CTATTTCTTGTCAGC G-CCCCGCCGCTC TCGCC GAGCCGCGGGGTC TTTGCGTTTTCAGGC TERM 2320 3324460 - 3324486 + T 86 -15.1 -3.54879 | overlap 3324459 3324452 TATTTCTTGTCAGCG CCCCGCCGCTC TCGCC GAGCCGCGGGG TCTTTGCGTTTTCAG Rpal_3081 3324632 - 3324498 - | hypothetical protein TERM 2321 3324675 - 3324658 - R 71 -12.7 -3.01712 | opp_overlap 3324659 CCCTTCGGTGCAATA CGCTGCC GGAT GGCAGCG CCCGCAGCTTGTGGG Rpal_3082 3324990 - 3324727 - | hypothetical protein TERM 2322 3325564 - 3325574 + H 72 -2.4 -4.71426 | CTCCGACCATTCATC GGCC TTC GGCA TTTTGTTCATGACGG TERM 2323 3325588 - 3325612 + H 73 -6.4 -4.2828 | gap 1, overlap 3325590 3325591 CATTTTGTTCATGAC GGGCGCGCGAG TTCG CT-GCGCGTTC TTTTGCTGCATCAGA TERM 2324 3325591 - 3325609 + H 73 -6.7 -4.26327 | gap 1, overlap 3325590 3325588 TTTGTTCATGACGGG CGCGCGAG TTCG CT-GCGCG TTCTTTTGCTGCATC Rpal_3083 3325713 - 3325940 + | hypothetical protein TERM 2325 3326484 - 3326510 + G 70 -11.4 -3.48593 | overlap 3326488 ACGCCGTGATGCACG GCCGCCTGCGCC GGT GGCGCCGGTGCC TTATGTGACGCCGTC TERM 2326 3326564 - 3326594 + G 73 -6.6 -4.37886 | overlap 3326565 CGGCAAGCTATGCGG GCGGCCAGGTCGCC AAT GGCGGGCAGGTCGG TTTTCTCGGCAATCG Rpal_3084 3326257 - 3328551 + | TonB-dependent siderophore receptor TERM 2327 3328722 - 3328739 + G 75 -6.9 -4.36914 | GACGATGCGACTGCG TGTGCGG AAGG CCGCCCA TTTTCTCGAACGGAC TERM 2328 3328851 - 3328875 + G 74 -12.1 -3.59202 | CGGCTTCCTGCTTGG CATGATCGCGC TCG GCGCGATCGGG TTCTATCTCGGCATC Rpal_3085 3328711 - 3329148 + | putative membrane protein of unknown function TERM 2329 3329198 - 3329171 - T 93 -14.2 -4.03234 | opp_overlap 3329177, overlap 3329172 3329177 GTCTTCCCACACAAA CGAAAACCGCCC CGAA GGGCGGTTTTCC AGCATCGTGGCGAGC TERM 2330 3329197 - 3329172 - T 90 -17.7 -3.01726 | opp_overlap 3329177, overlap 3329171 3329177 TCTTCCCACACAAAC GAAAACCGCCC CGAA GGGCGGTTTTC CAGCATCGTGGCGAG TERM 2331 3329177 - 3329192 + T 83 -11.8 -4.10161 | opp_overlap 3329172 3329171 3329177 CCACACAAACGAAAA CCGCCC CGAA GGGCGG TTTTCCAGCATCGTG TERM 2332 3329192 - 3329177 - T 100 -11.8 -4.65153 | opp_overlap 3329177, overlap 3329172 3329171 CCACACAAACGAAAA CCGCCC CGAA GGGCGG TTTTCCAGCATCGTG Rpal_3086 3329580 - 3329263 - | hypothetical protein Rpal_3087 3329804 - 3330772 + | short-chain dehydrogenase/reductase SDR Rpal_3088 3330811 - 3331596 + | protein of unknown function DUF169 TERM 2333 3331609 - 3331655 + T 78 -15.9 -2.78384 | gap 1, opp_overlap 3331604 TAACAACCTATCATG TCGTCATTCCGGG-GCGCGAGC GAAA GCTCGCGAGCCCGGAATCTCGA TGTGGTGAGGCACGG Rpal_3089 3333312 - 3331756 - | Undecaprenyl-phosphate glucose phosphotransferase Rpal_3090 3334565 - 3333423 - | glycosyl transferase group 1 TERM 2334 3335072 - 3335019 - g 80 -9.4 -4.18018 | gap 2 CGTTCCGATCGAAAA GCCGGCACCGCTGCCGCCGGACGGCG ATAT CGACGTGCGGCTG-ATCGG-GCAGGC ACTCGCCCGCAAGAA Rpal_3091 3334834 - 3337188 + | lipopolysaccharide biosynthesis protein TERM 2335 3337234 - 3337214 - T 100 -15.4 -4.3851 | CACATCAAACAGAAA CGCCCGGG CGGGC CCCGGGCG TTGACGGTCGGGTAA Rpal_3092 3338461 - 3337268 - | conserved hypothetical protein; putative acyl-CoA N-acyltransferase related protein Rpal_3093 3338592 - 3339644 + | polysaccharide deacetylase TERM 2336 3339687 - 3339659 - T 100 -22.5 -3.04144 | GCGGGACTCGCAAGA GCGGCCCGAAGAC GGC GTCTCCGGGCCGC GCGTATCAGCAAACT Rpal_3094 3340192 - 3339710 - | Ferritin Dps family protein Rpal_3095 3340548 - 3341480 + | conserved hypothetical protein; putative signal peptide TERM 2337 3341508 - 3341546 + T 85 -10.3 -4.30014 | gap 2, opp_overlap 3341512, overlap 3341508 3341511 TCGTCGCCGAAACAA CA--AACGCCGCCACCGTG ATC CCCGGTGGCGGCGCTCCTG TTTTAGATTGCTGCC TERM 2338 3341508 - 3341544 + T 78 -12.1 -3.75051 | opp_overlap 3341512, overlap 3341508 3341511 TCGTCGCCGAAACAA CAAACGCCGCCACCGTG ATC CCCGGTGGCGGCGCTCC TGTTTTAGATTGCTG TERM 2339 3341511 - 3341541 + T 90 -18.2 -2.96152 | opp_overlap 3341512, overlap 3341508 3341508 TCGCCGAAACAACAA ACGCCGCCACCGTG ATC CCCGGTGGCGGCGC TCCTGTTTTAGATTG TERM 2340 3341540 - 3341512 - T 100 -21.7 -4.56978 | opp_overlap 3341511 3341508 3341508 CGCCGAAACAACAAA CGCCGCCACCGTG ATC CCCGGTGGCGGCG CTCCTGTTTTAGATT Rpal_3096 3341780 - 3341568 - | hypothetical protein Rpal_3097 3341877 - 3342989 + | cytochrome oxidase assembly Rpal_3098 3343680 - 3343003 - | transcriptional regulator, TetR family TERM 2341 3343082 - 3343094 + g 80 -9.1 -4.25104 | opp_overlap 3343073 3343080 3343077 AATTCAGCAACAATC CGGCT GCG AGCCG TTTTGGTGACGACGC TERM 2342 3343605 - 3343591 - G 80 -9.2 -4.23892 | overlap 3343592 CTGAATCATCGAAAA CCCGGC ACC GCCGGA TTCGCGGATCAAGGC TERM 2343 3343649 - 3343618 - G 76 -14.5 -3.14564 | GGATTCGCGGATCAA GGCGTGCGC-GGCTG TCAC CAGCCCGCGC-CGCC GGGATTCCAGAGTGC Rpal_3099 3345421 - 3343682 - | thiamine pyrophosphate domain protein TPP-binding Rpal_3100 3345505 - 3345921 + | hypothetical protein Rpal_3101 3346583 - 3346011 - | protein of unknown function DUF1211 Rpal_3102 3347891 - 3346611 - | O-acetylhomoserine/O-acetylserine sulfhydrylase Rpal_3103 3348570 - 3347986 - | hypothetical protein Rpal_3104 3349547 - 3348720 - | Enoyl-CoA hydratase/isomerase Rpal_3105 3349638 - 3350066 + | thioesterase superfamily protein Rpal_3106 3350222 - 3350686 + | ribosomal protein L13 Rpal_3107 3350688 - 3351170 + | ribosomal protein S9 TERM 2344 3351197 - 3351216 + F 100 -16.4 -5.7946 | opp_overlap 3351197 ACCCGGTCGACAAAA GGGCGCCC CGCG GGGCGCCC TTTTTTTGTTGCGCG TERM 2345 3351216 - 3351197 - f 100 -16.4 -4.37092 | opp_overlap 3351197 ACCCGGTCGACAAAA GGGCGCCC CGCG GGGCGCCC TTTTTTTGTTGCGCG Rpal_3108 3351445 - 3352680 + | diguanylate cyclase TERM 2346 3352669 - 3352688 + F 85 -15 -3.55622 | AGCGAGGTTGGGCAG GCGGTGGC CTGA GCCACCGC TTTCGACCGCTTCAA Rpal_3109 3352759 - 3353061 + | Antibiotic biosynthesis monooxygenase TERM 2347 3353120 - 3353062 - T 70 -12.3 -3.1247 | ACGTCTCAGACGTAA TCGCGAGCGGCGCGGTGCCGGCGG-GC GAGATCA GCTCGGCCGGCTCCTCGCCGCGCA-GA TGGTCGAGCACGACC Rpal_3110 3354196 - 3353045 - | protein of unknown function UPF0118 Rpal_3111 3354458 - 3355405 + | rare lipoprotein A Rpal_3112 3356381 - 3355434 - | alpha/beta hydrolase fold TERM 2348 3355962 - 3355988 + g 77 -13.6 -3.53444 | GTTGGTGATTCCGGC GGCGCGCAGCTG ATC CAGCGGCGGGCC TTTGCCGCGCCATGG Rpal_3113 3356526 - 3357767 + | Serine-type D-Ala-D-Ala carboxypeptidase Rpal_3114 3357770 - 3358462 + | dTMP kinase Rpal_3115 3358459 - 3359514 + | DNA polymerase III subunit delta' Rpal_3116 3359595 - 3361139 + | methionyl-tRNA synthetase Rpal_3117 3361143 - 3361931 + | hydrolase, TatD family Rpal_3118 3361957 - 3362760 + | hypothetical protein TERM 2349 3362949 - 3362904 - T 76 -11.1 -3.73534 | gap 1, overlap 3362905 TAACGTCACTAACAA CCTCGAGATTCCGGGTTCGCGC TTC GCGCGC-CCCGGAATGACGAAA ACCAATTACTCCAAA Rpal_3119 3364604 - 3362955 - | AMP-dependent synthetase and ligase Rpal_3120 3366542 - 3364659 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 2350 3365607 - 3365559 - G 70 -10.7 -3.54424 | overlap 3365564 CTTCATCTCCGGAAA CAGCACCGGCGCGACCGCGGCCA TGT CGGCGGCCTTCGAGCCGGAGATG CCGGACACCAGGTAC Rpal_3121 3367574 - 3366555 - | TRAP dicarboxylate transporter, DctP subunit Rpal_3122 3368852 - 3369547 + | protein of unknown function DUF125 transmembrane Rpal_3123 3370977 - 3369640 - | Ferric reductase domain protein transmembrane component domain TERM 2351 3370803 - 3370788 - G 70 -8.2 -3.90112 | GCGTTTCGAACCAAA CCGGCC GGGC GGCCAG GATCACGCCGACGGA TERM 2352 3371044 - 3371005 - R 75 -3.7 -4.72272 | gap 3, opp_overlap 3371014, overlap 3371006 3371008 3371012 TCGCCGCATCAAAAA GGACGAATAGCGGGCCATCC AGA GGAC-GCCCGCTATT-G-CG AAACTGCTCGAGCGA TERM 2353 3371044 - 3371008 - R 74 -13.2 -3.28472 | opp_overlap 3371014, overlap 3371006 3371005 3371012 CCGCATCAAAAAGGA CG-AATAGCGGGCCATCC AGA GGAC-GCCCGCTATTGCG AAACTGCTCGAGCGA TERM 2354 3371039 - 3371012 - R 76 -12.8 -3.42182 | gap 1, opp_overlap 3371014, overlap 3371006 3371005 3371008 ATCAAAAAGGACGAA TAGCGGGCCATCC AGA GGAC-GCCCGCTA TTGCGAAACTGCTCG Rpal_3124 3371535 - 3371068 - | hypothetical protein Rpal_3125 3371789 - 3371625 - | hypothetical protein Rpal_3126 3372094 - 3373152 + | signal transduction histidine kinase Rpal_3127 3373929 - 3373183 - | Methyltransferase type 11 TERM 2355 3374109 - 3374097 - H 76 -9.1 -4.09739 | GGAAGTGGGGTAAAA CGTCG CAC CGACG ACCGACCGTCACAGC TERM 2356 3374868 - 3374838 - g 70 -11.8 -3.41051 | gap 1 CTACTGGCACCACAA CGCCGCG-GCGCG TGAGGG CGCGCGCGTGGCG CTGACCATCACCGGC Rpal_3128 3374371 - 3377298 + | NADH dehydrogenase (quinone) Rpal_3129 3377289 - 3377630 + | NADH-ubiquinone oxidoreductase chain 4L TERM 2357 3378611 - 3378650 + G 77 -14.2 -3.38656 | gap 1, overlap 3378610 3378622 ACGGTCCTGGCGGTC GCGGCCGCTGCTGGCACGG CCG CCGTGACAGCCTCGGC-GC TGTTCTATCTGGTCA Rpal_3130 3377627 - 3379261 + | NADH/Ubiquinone/plastoquinone (complex I) Rpal_3131 3379258 - 3379746 + | cation antiporter Rpal_3132 3379743 - 3380024 + | multiple resistance and pH regulation protein F Rpal_3133 3380021 - 3380392 + | monovalent cation/proton antiporter, MnhG/PhaG subunit Rpal_3134 3381198 - 3380410 - | alanine racemase domain protein Rpal_3135 3382523 - 3381219 - | Glycine hydroxymethyltransferase Rpal_3136 3384167 - 3382677 - | transcriptional regulator, GntR family with aminotransferase domain Rpal_3137 3384275 - 3385507 + | benzoate transporter Rpal_3138 3385504 - 3386370 + | pyridoxal kinase TERM 2358 3386465 - 3386427 - T 74 -9.5 -3.92324 | gap 1, overlap 3386454 CGCTCGAACACTAAA GCCCCGGCGCGACCCACG CGGT CG-AAATCGCGCCGCGAC CATCGAGGCCGATCC TERM 2359 3387178 - 3387205 + T 75 -12 -3.64703 | gap 1 GGCTTTTGGCTTGAT GGCC-TCGCGCAG CGT CTGCGCCATGGCC TTTGCGTCGCGGAAA TERM 2360 3387416 - 3387469 + T 70 -11.8 -3.11619 | gap 3, overlap 3387426 CAAACGTTGGCGTAG C-CTCGCACGATCGCGGCCGCGCGGCG CGA TGCCGCG-GGCCG-GATCGTATCAGCG TTCGGTCAGTTCTTC TERM 2361 3387426 - 3387458 + T 74 -14.2 -2.63631 | gap 2, overlap 3387416 CGTAGCCTCGCACGA TCGCGGCCGCGCGGCG CGA TGCCGCG-GGCCG-GA TCGTATCAGCGTTCG Rpal_3141 3387972 - 3387475 - | Collagen triple helix repeat Rpal_3142 3388219 - 3390282 + | UvrD/REP helicase Rpal_3143 3390612 - 3390289 - | hypothetical protein Rpal_3144 3391422 - 3390685 - | hypothetical protein Rpal_3145 3391486 - 3392124 + | nitrile hydratase, alpha subunit Rpal_3146 3392121 - 3392777 + | Nitrile hydratase Rpal_3147 3392777 - 3393199 + | hypothetical protein TERM 2362 3393673 - 3393702 + G 74 -12.7 -3.53343 | GCTCGGCCCTGCTGC GCCGTCGACGCCG GAAG CGGCTGCGGCGGC TTTCGAAGCCGCGTT TERM 2363 3394343 - 3394318 - g 79 -11.9 -3.85864 | gap 1, opp_overlap 3394312 3394323 3394324 CTACGACTACAAGAA GCAGCT-CGGCT GCG AGCCGCAGCCGC TTATGGTTTTGGAGA TERM 2364 3394323 - 3394343 + G 77 -12.5 -3.68359 | opp_overlap 3394318, overlap 3394312 3394324 ACTACAAGAAGCAGC TCGGCTGCG AGC CGCAGCCGC TTATGGTTTTGGAGA TERM 2365 3394324 - 3394342 + G 75 -16 -2.80533 | opp_overlap 3394318, overlap 3394323 3394312 CTACAAGAAGCAGCT CGGCTGCG AGC CGCAGCCG CTTATGGTTTTGGAG Rpal_3148 3393323 - 3394456 + | Protein involved in cellulose biosynthesis (CelD)-like protein Rpal_3149 3395721 - 3394429 - | beta-lactamase TERM 2366 3395538 - 3395499 - G 75 -11.4 -3.6608 | gap 1, overlap 3395488 AGCACTGCAGGTAAA CCGGCCTGCCGTGCTGCTG GAT CAGCACTACGGCAC-CCGG CAGCTTCCCCGCAGC Rpal_3150 3396516 - 3395803 - | exsB protein TERM 2367 3396541 - 3396563 + H 76 -8.3 -4.1899 | CTGTAGCACCACGCG CTGCGCAGG CCAAT CCGGCGCGG TTTTCGCTGGGATGG Rpal_3151 3396633 - 3397457 + | MazG family protein TERM 2368 3398071 - 3398059 - g 70 -4.1 -4.47328 | AACCTGAGGACAAAA TCTCC GAA GAAGA AATCCATAGCCTGGT Rpal_3152 3397536 - 3398831 + | protein of unknown function DUF21 Rpal_3153 3398828 - 3399190 + | hypothetical protein TERM 2369 3399250 - 3399211 - T 100 -26.5 -4.07568 | opp_overlap 3399212 3399214, overlap 3399212 3399214 TCGCCGGCCCCAAAA CGACGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCGTCT CGTATCCCGTCCCAG TERM 2370 3399249 - 3399212 - T 100 -30 -3.04398 | opp_overlap 3399212 3399214, overlap 3399211 3399214 CGCCGGCCCCAAAAC GACGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCGTC TCGTATCCCGTCCCA TERM 2371 3399212 - 3399249 + T 100 -30 -2.63596 | opp_overlap 3399212 3399211 3399214, overlap 3399214 CGCCGGCCCCAAAAC GACGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCGTC TCGTATCCCGTCCCA TERM 2372 3399247 - 3399214 - T 100 -26.8 -3.08032 | opp_overlap 3399212 3399214, overlap 3399212 3399211 CCGGCCCCAAAACGA CGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCG TCTCGTATCCCGTCC TERM 2373 3399214 - 3399247 + T 100 -26.8 -2.85999 | opp_overlap 3399214 3399212 3399211, overlap 3399212 CCGGCCCCAAAACGA CGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCG TCTCGTATCCCGTCC Rpal_3154 3399809 - 3399306 - | single-strand binding protein Rpal_3155 3400347 - 3401087 + | OmpA domain protein transmembrane region-containing protein TERM 2374 3401124 - 3401142 + F 100 -13.1 -4.81249 | GCCCCGCTTGCGGAA GGCCGGC CTCGC GCCGGCC TTTTTGCGTTTCGGA TERM 2375 3401356 - 3401373 + F 70 -9.8 -3.55071 | CCGGAAGCTCCGGCG CGCGCC CCAACC GGCGCG TTTCCGCGCGTCTGG TERM 2376 3402239 - 3402221 - g 89 -2.4 -5.34365 | gap 1, overlap 3402222 CGACAAGAAGAAAAA GGCCGAC AAGAAG GTCG-CC AAGATCCACGACAAG Rpal_3156 3401397 - 3404414 + | excinuclease ABC, A subunit Rpal_3157 3404526 - 3405446 + | hypothetical protein Rpal_3158 3405906 - 3406280 + | hypothetical protein Rpal_3159 3407245 - 3406325 - | methionine sulfoxide reductase A Rpal_3160 3407503 - 3407255 - | protein of unknown function DUF433 Rpal_3161 3407648 - 3408424 + | Ion transport 2 domain protein Rpal_3162 3408462 - 3409016 + | hypothetical protein TERM 2377 3409269 - 3409242 - f 89 -17 -3.12999 | opp_overlap 3409240 3409258 TCACCTGACAGCCAA CGGCACACCGGC TCTC GCCGGCGTACCG GACTTTGAAATTGAG Rpal_3163 3409293 - 3409583 + | hypothetical protein Rpal_3164 3409716 - 3410123 + | thioesterase superfamily protein Rpal_3165 3410818 - 3410426 - | hypothetical protein TERM 2378 3411857 - 3411893 + G 76 -15.2 -3.18023 | gap 2, overlap 3411855 GTAGTGGCGGTCAAT CCGCTGCCGATCGCCGCC TGG GGC-GCGATCGTC-GCGG TGTTGCTGGTGATGG Rpal_3166 3411200 - 3412096 + | hypothetical protein TERM 2379 3412124 - 3412156 + F 100 -17.7 -4.4715 | overlap 3412123 GCAAGCTCCCCACCT CGGCCGCCGATCGTT CTC AGAGGTCGGCGGCCG TTTTGTGCATTGCGG Rpal_3167 3412596 - 3412748 + | protein of unknown function DUF1127 TERM 2380 3412775 - 3412807 + F 100 -17.8 -3.8709 | gap 1, overlap 3412779 TGTTTCTGCCTTCTA CGGCCAACGCCCGCC TCCT GGCGGGCGTT-GTCG TTTATGCGAGGCTTT TERM 2381 3412779 - 3412804 + F 93 -20.5 -3.00946 | overlap 3412775 TCTGCCTTCTACGGC CAACGCCCGCC TCCT GGCGGGCGTTG TCGTTTATGCGAGGC TERM 2382 3413796 - 3413809 + G 80 -9.5 -4.23723 | CAAGTTGAAGCACGG CGCGC AACT GCGCG TTTTCCGTACTATTC Rpal_3168 3412885 - 3414321 + | gid protein Rpal_3169 3415223 - 3414351 - | putative phytoene synthase Rpal_3170 3415603 - 3415220 - | protein of unknown function DUF498 Rpal_3171 3416882 - 3415764 - | protein-export membrane protein SecF Rpal_3172 3418509 - 3416908 - | protein-export membrane protein SecD Rpal_3173 3418994 - 3418554 - | preprotein translocase, YajC subunit TERM 2383 3419287 - 3419268 - g 74 -12.8 -3.53811 | CGCACCGGCGGCAAA GCGCCGCC CGCC GGCGACGC CTCCCGGCGCATCCC Rpal_3174 3419185 - 3420174 + | protein of unknown function DUF815 TERM 2384 3421903 - 3421883 - g 74 -15.5 -2.66964 | overlap 3421880 3421896 TGACTTACGATATCA CGCCGACAT TCA ATGTCGGCG TCGGCGGCCGCTACT Rpal_3175 3420343 - 3422043 + | hypothetical protein Rpal_3176 3422890 - 3422090 - | hypothetical protein Rpal_3177 3423035 - 3424615 + | transcriptional regulator, SARP family TERM 2385 3424681 - 3424659 - T 100 -16.3 -5.27335 | opp_overlap 3424659 GCGTCCAAACAAAAA TGCCCGGCC TTTCG GGCCGGGCA TTTCTTCTTCCCCAG TERM 2386 3424659 - 3424681 + T 100 -17 -4.44667 | opp_overlap 3424659 GCGTCCAAACAAAAA TGCCCGGCCT TTC GGGCCGGGCA TTTCTTCTTCCCCAG Rpal_3178 3426131 - 3424716 - | Peptidase M23 Rpal_3179 3426905 - 3426252 - | protein-L-isoaspartate O-methyltransferase Rpal_3180 3427127 - 3427501 + | response regulator receiver protein TERM 2387 3427478 - 3427522 + T 72 -13.4 -2.72379 | gap 1, opp_overlap 3427468 AAGCAGGCCCTCGAC GCGACGCTGCGCGGCGCGGCG TAGC TGCCGCGTCACTCCGCG-CGC TCATTCCCGCGTTCA Rpal_3181 3428037 - 3427510 - | protein of unknown function UPF0157 TERM 2388 3427723 - 3427689 - G 79 -7 -4.64657 | overlap 3427691 CGAAACGGTGAAAAA CGTCGAACTCTCCGCC TTT GACGGTGAGCTGGATG CCGAGATGGGGCATG TERM 2389 3428073 - 3428063 - R 100 -8.2 -5.28176 | overlap 3428064 CGCAGGTAGAAAAAA GCGC TTA GCGC CATGCCTACGCGTCC Rpal_3182 3429016 - 3428249 - | stationary-phase survival protein SurE TERM 2390 3429454 - 3429436 - R 72 -2.3 -4.72029 | gap 1 TGTAATCCAAGAAAA CCGCCGCC TGCT GG-GTCGG AACACCGATCGGCAC TERM 2391 3431359 - 3431385 + r 71 -9.5 -3.7108 | opp_overlap 3431355 3431356, overlap 3431359 AATCAACAAACTGCA G-CTCGCGAGCGC AAC GCG-TCGCGAGAC TTTCCATCTCGGCAT TERM 2392 3431606 - 3431586 - R 70 -10.4 -3.6608 | ACGATTCCAGTTAAA CGTCGCGC GGATA GCACGACG GCCACACGATCAAGT Rpal_3184 3432304 - 3431648 - | SCP-like extracellular Rpal_3185 3433614 - 3432310 - | seryl-tRNA synthetase Rpal_3186 3434162 - 3433725 - | putative autotransporter Rpal_3187 3434995 - 3434186 - | Sec-independent protein translocase, TatC subunit Rpal_3188 3435501 - 3434992 - | putative sec-independent protein translocase protein Rpal_3189 3435954 - 3435718 - | twin-arginine translocation protein, TatA/E family subunit Rpal_3190 3437399 - 3436101 - | segregation and condensation protein B Rpal_3191 3438253 - 3437420 - | chromosome segregation and condensation protein ScpA TERM 2393 3437506 - 3437493 - G 72 -4.5 -4.48449 | gap 1, overlap 3437494 TTACGAAAATACAAA GGCGCC AAG GG-GCC CGACTGATGCAGCTC TERM 2394 3438194 - 3438225 + g 83 -15.2 -3.66178 | GACGAGCGCTTCGTC CTGGTCGGCCTG CTGCTCGA CAGGCCGGCCAG TTTCGAATTGCAGAA Rpal_3192 3439275 - 3438250 - | Beta-N-acetylhexosaminidase TERM 2395 3439235 - 3439186 - G 81 -14.9 -3.54382 | overlap 3439182 CTTGAACAGAATGAA GCCCCAGGGACGAGATTCGCGGA GAAA TCCGCGCTCATCGTCGCTGAGGC TAAGGCCGGCAATAC Rpal_3193 3440961 - 3439324 - | Sporulation domain protein Rpal_3194 3442824 - 3441046 - | arginyl-tRNA synthetase Rpal_3195 3444093 - 3442891 - | deoxyguanosinetriphosphate triphosphohydrolase TERM 2396 3442939 - 3442920 - G 73 -4.2 -4.65895 | gap 1, overlap 3442921 3442922 GGGTCGAGTCAAAAA GC-CGCTGA TGT TCGGCGAGC GCATAGCGGTCGGTC Rpal_3196 3444212 - 3444544 + | iron-sulfur cluster assembly accessory protein TERM 2397 3445045 - 3445010 - g 80 -17.4 -2.62983 | CCCAGGCGGAGACCA CGGCGCGGCAGCGCGC CGTC GCGCGCGCCCTCGCCG CCGGGGACCGCGCCG Rpal_3197 3444775 - 3445788 + | putative methyl accepting chemotaxis protein Rpal_3198 3445785 - 3446849 + | hypothetical protein Rpal_3199 3447613 - 3446876 - | hypothetical protein TERM 2398 3447336 - 3447392 + g 70 -10.8 -3.53224 | gap 2 ATCGGCGCGCCTTGC GCCGGCGTCAGCTCGATCGCGCGGAGAG CAC CTGCCTGCCCGACCG-GTTGAC-CCGGC TTTGGCGGAGCAATC Rpal_3200 3448694 - 3447735 - | hypothetical protein Rpal_3201 3449195 - 3448857 - | helix-turn-helix domain protein Rpal_3202 3449378 - 3450169 + | exodeoxyribonuclease III Xth Rpal_3203 3451157 - 3450336 - | Sel1 domain protein repeat-containing protein TERM 2399 3450477 - 3450512 + g 100 -12.4 -4.62471 | opp_overlap 3450488, overlap 3450479 ATCGCGGGCCAGCGT CAGCCACATCAGGCCG CGAG CGGCCTGGCGCGGCAG TTTTTCGCCGTTGAA Rpal_3204 3451587 - 3451144 - | hypothetical protein TERM 2400 3451178 - 3451205 + g 70 -9.8 -3.64703 | gap 1, overlap 3451179 ATCTCGCGGGTCACC CCCGGTGCGGTCG CAA CGACCG-GCCGGC TTTCCATCCAACACG TERM 2401 3451771 - 3451790 + r 72 -7.8 -4.14511 | opp_overlap 3451771 GCGACACAGCAACAA GAGTGTCC TGGC GGACACCC TTTTCAGGTGCACTT TERM 2402 3451790 - 3451771 - R 74 -10 -3.80018 | opp_overlap 3451771 GCGACACAGCAACAA GAGTGTCC TGGC GGACACCC TTTTCAGGTGCACTT Rpal_3205 3453241 - 3451820 - | dihydrolipoamide dehydrogenase Rpal_3206 3454723 - 3453317 - | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase Rpal_3207 3455032 - 3454736 - | hypothetical protein Rpal_3208 3456867 - 3455458 - | Transketolase central region TERM 2403 3456248 - 3456199 - G 78 -15.8 -3.18681 | gap 3, opp_overlap 3456219 3456233, overlap 3456200 3456226 GTTGAAGGTCATGAA CTCGACGATCGGCTTCAGC-CCGGC AAA GCCGGCGCCGACGCCGA-CGCCG-G CAAAACCGTGTTCGG TERM 2404 3456248 - 3456200 - G 73 -16 -2.50994 | opp_overlap 3456219 3456233, overlap 3456199 3456226 TTGAAGGTCATGAAC TCGACGATCGGCTTCAGC-CCGGC AAA GCCGGCGCCGACGCCGA-CGCCGG CAAAACCGTGTTCGG TERM 2405 3456249 - 3456226 - G 89 -17.4 -3.54424 | opp_overlap 3456219 3456233, overlap 3456199 3456200 CTTCAGCCCGGCAAA GCCGGCGCCG ACGC CGACGCCGGC AAAACCGTGTTCGGT Rpal_3209 3457960 - 3456926 - | pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit Rpal_3210 3458430 - 3458113 - | Septum formation initiator TERM 2406 3458466 - 3458521 + r 86 -12.7 -3.99324 | gap 2, overlap 3458469 CGGTTAACGCGCGGC TAACG--CGGCAGCTGTCCCGCCAGCT TTAC AACCGGCGGGACAGGTGTCGGGCGTTA TTTGTACTGCTGGGC TERM 2407 3458469 - 3458518 + r 81 -10 -4.12254 | gap 2, overlap 3458466 TTAACGCGCGGCTAA CG--CGGCAGCTGTCCCGCCAGCT TTAC AACCGGCGGGACAGGTGTCGGGCG TTATTTGTACTGCTG Rpal_3211 3459079 - 3458519 - | NADPH-dependent FMN reductase Rpal_3212 3460360 - 3459218 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 2408 3461006 - 3461024 + G 77 -8 -4.38712 | overlap 3460997 3460997 TCATGACCTGGCTCC GCCGCGGT TTC GCCGCAGC TTTTGTGGCGCTCGG Rpal_3213 3460453 - 3461067 + | Lysine exporter protein (LYSE/YGGA) TERM 2409 3461189 - 3461154 - T 91 -9.7 -4.55295 | gap 1, overlap 3461156 GGCTCGACAAACAAA GACGTGGATGGCCGGG ACGAG CCCGGCCAT-CACGAA GGATAGCACCTCCGC TERM 2410 3461187 - 3461156 - T 95 -16.7 -3.88703 | gap 1, overlap 3461154 CTCGACAAACAAAGA CGTGGATGGCCGGG ACGAG CCCGGCCAT-CACG AAGGATAGCACCTCC Rpal_3214 3462024 - 3461221 - | hypothetical protein TERM 2411 3462038 - 3462087 + r 75 -11.6 -3.55444 | gap 1, opp_overlap 3462061, overlap 3462040 ATGCTGTTTTTCCTG CTTGCCG-CTCCGGTTGAGAGTA ACTCC TATTTTCAACCGGAGCCAGCATG TTTCGCAGGTGAACG TERM 2412 3462040 - 3462085 + r 74 -12.8 -3.35597 | gap 1, opp_overlap 3462061, overlap 3462038 GCTGTTTTTCCTGCT TGCCG-CTCCGGTTGAGAGTA ACTCC TATTTTCAACCGGAGCCAGCA TGTTTCGCAGGTGAA Rpal_3215 3463242 - 3462109 - | Alcohol dehydrogenase GroES domain protein TERM 2413 3463342 - 3463314 - R 83 -15.3 -3.13432 | overlap 3463306 TTCAAGACGAGGCAA CGGCCGCGACGAT CAC ATCATCGCGGCCC AAGGATGCGTTCAGC Rpal_3216 3464636 - 3463353 - | Phosphopyruvate hydratase Rpal_3217 3464823 - 3465299 + | 7-cyano-7-deazaguanine reductase Rpal_3218 3465422 - 3465766 + | hypothetical protein Rpal_3220 3466007 - 3467518 + | periplasmic glucan biosynthesis protein MdoG Rpal_3221 3467506 - 3469671 + | glycosyl transferase family 2 Rpal_3222 3470894 - 3469668 - | major facilitator superfamily MFS_1 TERM 2414 3470264 - 3470311 + g 70 -13.3 -3.01712 | TGAAGATAGTTCGAT AGCCGCGGCGTAGCGCCGGCA GGTCCA TCTCGGCGCTGCGTGGCGGCA TATTGGCGCCGCGCG TERM 2415 3470757 - 3470709 - G 75 -11.5 -3.69354 | CTGCACAACCGCAAA GGTGAAGGCCGTAACCGCGGCGA GAC CCGCCGCGGTGGTGATCGTCACC GAGAACTCGTCGGCG Rpal_3223 3471757 - 3470894 - | 2-dehydro-3-deoxyphosphooctonate aldolase Rpal_3224 3472647 - 3471754 - | hypothetical protein TERM 2416 3472434 - 3472417 - G 73 -6.3 -4.4078 | gap 1, opp_overlap 3472420, overlap 3472419 3472421 TGCCCCGAACGAAAA CA-CACCG TCG CGGTGCTG CGGGATCTTGTCGGG TERM 2417 3472431 - 3472419 - G 71 -9.1 -3.8125 | opp_overlap 3472420, overlap 3472417 3472421 CCCCGAACGAAAACA CACCG TCG CGGTG CTGCGGGATCTTGTC Rpal_3225 3473096 - 3472770 - | NIPSNAP family containing protein Rpal_3226 3473173 - 3473460 + | protein of unknown function DUF497 Rpal_3227 3473450 - 3473725 + | hypothetical protein Rpal_3228 3474620 - 3473763 - | hypothetical protein Rpal_3229 3474751 - 3475128 + | PAAR repeat-containing protein TERM 2418 3475364 - 3475336 - g 73 -9.5 -3.93038 | opp_overlap 3475336 3475335 CACCGCAAGATCAAA GCCGCCCAAGC TCTGTCT GTCTGGGCGGC GTTCGTGCTGTTCGA Rpal_3230 3475240 - 3475386 + | hypothetical protein Rpal_3231 3477031 - 3475400 - | CTP synthase TERM 2419 3477176 - 3477150 - R 91 -16.6 -3.5882 | CAGACGATTGCTAAA GGGACCTCAGGC TAG GCGTGAGGTCCC GTCAGCGCATATCGG Rpal_3232 3477602 - 3477198 - | preprotein translocase, SecG subunit Rpal_3233 3478554 - 3477778 - | Triose-phosphate isomerase TERM 2420 3478760 - 3478786 + H 75 -13.6 -3.09516 | GGCGACGCTAGTTTG CCCCCCGCGCTG ACA CAGCGCGGCCGG TTCCCTCCTGACAAA Rpal_3234 3478824 - 3480713 + | PpiC-type peptidyl-prolyl cis-trans isomerase Rpal_3235 3480750 - 3481766 + | anthranilate phosphoribosyltransferase Rpal_3236 3481897 - 3482694 + | Indole-3-glycerol-phosphate synthase TERM 2421 3482838 - 3482810 - g 74 -5.2 -4.57073 | overlap 3482811 GACGTGTCGGAAAAA CCGGCCACCG AACGCGTCG CGGTCGCCGA AGGCCGCGTGGTGAT TERM 2422 3482929 - 3482900 - g 89 -10.6 -4.1822 | opp_overlap 3482910 GGCGACGCCAAGAAA GGCGACGTGCTC GGCACT GCGCGCGTCGCC GGGATCATGGCGGCG Rpal_3237 3482705 - 3483235 + | molybdenum cofactor biosynthesis protein C TERM 2423 3484367 - 3484414 + G 74 -12.6 -3.53444 | gap 1, overlap 3484356 3484352 CGAGACCGGCCTGCT CGCAGCTGCGCCGGATCCGTTCG ATC CGA-TGGATCAGGCGCTGCACCG TTTGGCCGGCGATCA Rpal_3238 3483273 - 3485831 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 2424 3485848 - 3485812 - T 75 -13.7 -3.01712 | opp_overlap 3485835, overlap 3485815 3485832 3485835 CGCTGTGGCGGAAGA TGATGCGGCAACCGG GATAACA CCGGCCGCCGCATCG CGGGATGCGCCTGGC TERM 2425 3485845 - 3485815 - T 72 -14 -2.73875 | opp_overlap 3485835, overlap 3485812 3485832 3485835 TGTGGCGGAAGATGA TGCGGCAACCGG GATAACA CCGGCCGCCGCA TCGCGGGATGCGCCT Rpal_3239 3486005 - 3485868 - | hypothetical protein Rpal_3240 3486435 - 3485959 - | hypothetical protein TERM 2426 3486140 - 3486107 - GH 83 -16.7 -2.87564 | opp_overlap 3486118, overlap 3486110 TCATCTTCGGACAGA TCATGCTGAGCGGCG CGGT CGCCGCTCAGCCGGA TCGAGGCCCCGCCTT TERM 2427 3486137 - 3486110 - GH 84 -17 -2.69151 | opp_overlap 3486118, overlap 3486107 TCTTCGGACAGATCA TGCTGAGCGGCG CGGT CGCCGCTCAGCC GGATCGAGGCCCCGC Rpal_3241 3486674 - 3487174 + | heat shock protein Hsp20 TERM 2428 3487198 - 3487233 + F 93 -18.9 -3.33696 | opp_overlap 3487192 CGTTAATCATCCCTC GCCGTGCCCCGGCCG CGAAAC CGTCCGGGGCTCGGC TTAGTTGCAAGCAAG Rpal_3242 3487343 - 3487591 + | type IV pilus assembly PilZ Rpal_3243 3488488 - 3487631 - | OmpA/MotB domain protein Rpal_3244 3488748 - 3489374 + | HAD-superfamily hydrolase, subfamily IA, variant 3 Rpal_3245 3489405 - 3489893 + | thioesterase superfamily; K07107 TERM 2429 3489960 - 3489946 - f 71 -8.5 -3.90112 | CTGGGGCGAAGGAAA CCGCG ACGCA CGCGG TATCAGCCCCAAGCC Rpal_3246 3490041 - 3490454 + | rifampin ADP-ribosylating transferase Rpal_3247 3490840 - 3490499 - | hypothetical protein Rpal_3248 3491040 - 3492251 + | molybdenum cofactor synthesis domain protein TERM 2430 3492974 - 3492949 - g 95 -16.9 -3.8211 | CCTGATCCAGAAGAA CGACGTCGCCG ACAC CGGCGACATCG TGGTGGCGCTGATCG Rpal_3249 3492428 - 3493138 + | transcriptional repressor, LexA family Rpal_3250 3495477 - 3493210 - | ComEC/Rec2-related protein TERM 2431 3494452 - 3494488 + g 77 -10.6 -3.81146 | opp_overlap 3494455 CGACAGCGCCAGATA GAACGCCGCGGCGAGC AGCGC GCCCGCCGCCGCGACC TTCTTGATTGGAAAC TERM 2432 3494485 - 3494455 - G 90 -18.2 -3.59202 | opp_overlap 3494452 CAGCGCCAGATAGAA CGCCGCGGCGAGCA GCG CGCCCGCCGCCGCG ACCTTCTTGATTGGA TERM 2433 3495550 - 3495520 - R 74 -11.9 -3.42346 | gap 1, overlap 3495509 3495507 AACAGTGGAGCAGAA TGCG-TCCGCCAGC AATC ACCGGCGGAGCGCA ATCAGGATCAGTGGT Rpal_3251 3497251 - 3495569 - | glutaminyl-tRNA synthetase TERM 2434 3496354 - 3496313 - G 73 -14.3 -3.14344 | gap 1 GATCCGCTTGACGAA GTCGCGCAGCGCCGCCGGCG GCA CGCCG-CGACGCCGCATGCC CGCGATCGTCGGCAT TERM 2435 3497372 - 3497388 + H 83 -15.1 -3.19192 | CTGCTATACACCCTG CGCGCCG CTC CGGCGCG TTCCCTTCCCTGCAA TERM 2436 3497772 - 3497751 - g 75 -13.7 -3.30124 | gap 1 GGCGATGCGCGACAA GGCGCGCGCC GAG GGC-CGCGCC AAGCTGTACGATGGA Rpal_3252 3497413 - 3498834 + | glutamyl-tRNA synthetase TERM 2437 3499020 - 3499010 - g 76 -2.4 -4.92757 | CGACCAACAACAAAA CGGC AAC GCTG ACGGTTGGAAACAAG Rpal_3253 3498985 - 3500289 + | citrate synthase I TERM 2438 3500345 - 3500310 - T 91 -17.6 -3.31461 | opp_overlap 3500312 3500315, overlap 3500311 3500315 GACCCAGCTCGATAA TCGAACGGCGAACCGC TCCA GCGGTTCGCCGTTCTG CTTTGGGGCCGCAGC TERM 2439 3500344 - 3500311 - T 91 -21.1 -2.58663 | opp_overlap 3500312 3500315, overlap 3500310 3500315 ACCCAGCTCGATAAT CGAACGGCGAACCGC TCCA GCGGTTCGCCGTTCT GCTTTGGGGCCGCAG TERM 2440 3500312 - 3500343 + T 100 -24.6 -2.90496 | opp_overlap 3500311 3500310 3500315, overlap 3500315 CCCAGCTCGATAATC GAACGGCGAACCGC TCCA GCGGTTCGCCGTTC TGCTTTGGGGCCGCA TERM 2441 3500315 - 3500340 + T 100 -20.5 -3.60151 | opp_overlap 3500315 3500311 3500310, overlap 3500312 AGCTCGATAATCGAA CGGCGAACCGC TCCA GCGGTTCGCCG TTCTGCTTTGGGGCC TERM 2442 3500340 - 3500315 - T 95 -20.5 -3.23452 | opp_overlap 3500312 3500315, overlap 3500311 3500310 AGCTCGATAATCGAA CGGCGAACCGC TCCA GCGGTTCGCCG TTCTGCTTTGGGGCC Rpal_3254 3501028 - 3500384 - | CMP/dCMP deaminase zinc-binding TERM 2443 3500998 - 3501012 + g 81 -5.7 -4.78029 | ACAGCGTATCAAGCG TCGAG GCAGA CTCGA TTTTGGTTTTCTTCA Rpal_3255 3502349 - 3501168 - | lipid-A-disaccharide synthase Rpal_3256 3503203 - 3502346 - | protein of unknown function DUF1009 Rpal_3257 3504061 - 3503219 - | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase TERM 2444 3503283 - 3503303 + g 75 -13.9 -3.29947 | overlap 3503284 CACAGCGCGACACGC TGGCCGCGG CCG CCGCGGCCC TTGATGTCGTCGATG TERM 2445 3503284 - 3503302 + g 80 -17.4 -2.57647 | overlap 3503283 ACAGCGCGACACGCT GGCCGCGG CCG CCGCGGCC CTTGATGTCGTCGAT Rpal_3258 3504525 - 3504070 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Rpal_3259 3505607 - 3504525 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TERM 2446 3505509 - 3505455 - G 71 -2.8 -4.59109 | overlap 3505457 GAGATTCTCGAAAAA GC-TCAAGTGCATTGGGCCGGCCTCG TCGAG CGAGGCCAGTCCAGTG-ATGCGATGC TCCGCGTACGAAGCA Rpal_3260 3508162 - 3505637 - | outer membrane protein assembly complex, YaeT protein TERM 2447 3506852 - 3506864 + g 75 -4.8 -4.65747 | opp_overlap 3506852 ACCCGACACCGAGAA GTCG CCGGT CGAC TTTTCTTCGAGGTTG Rpal_3261 3509486 - 3508335 - | membrane-associated zinc metalloprotease Rpal_3262 3510755 - 3509532 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2448 3509604 - 3509631 + g 75 -15.6 -2.70932 | gap 1, overlap 3509619 TTGGTCGAGAGCGAT GGCGTCG-TCGGC GGA GCCGAGCGGCGCC TGGTTGCCGGCGCGG TERM 2449 3510686 - 3510732 + g 76 -6.4 -4.56597 | opp_overlap 3510679 3510659 CGATCGAACCGGTGG CGCCGAGCACGCTTACGGTG CGGACGC CGCTATGGGCACGCTCGGCG TTTTTCAAAGGAACA Rpal_3263 3511608 - 3510760 - | phosphatidate cytidylyltransferase Rpal_3264 3512372 - 3511614 - | undecaprenyl diphosphate synthase TERM 2450 3512541 - 3512510 - R 95 -15.9 -4.07568 | GGCCGGGTCCGAAAA CGACGGCGATCCG TTCGGC CGGATCACCGCCG GGACGCGACCGGCGA Rpal_3265 3513144 - 3512584 - | ribosome recycling factor TERM 2451 3512730 - 3512782 + g 74 -12.7 -3.51934 | overlap 3512728 3512731 CCAGCTTCTTGATGG TGTCGAGGCCG-TCGCGGCGGACGT GGCGA ACGGC-GACGCGGGCGGCCTCGGCG TATTTGTGCGCGACC TERM 2452 3513202 - 3513181 - R 72 -12.3 -3.34267 | gap 1, overlap 3513179 AATCTCAAATCAATA TCGC-CGCGC CCT GCGCGCGCGA CCGCCTGTTAGCCCG Rpal_3266 3513926 - 3513210 - | uridylate kinase TERM 2453 3513951 - 3513976 + r 70 -10.3 -3.59979 | opp_overlap 3513949, overlap 3513952 GCTCCCTTGAAGACT GGCTCCCGGCC CGAA GGCCGGGAGGA TTTCGCGTAAACCGC TERM 2454 3513952 - 3513975 + r 72 -13.8 -2.75844 | opp_overlap 3513949, overlap 3513951 CTCCCTTGAAGACTG GCTCCCGGCC CGAA GGCCGGGAGG ATTTCGCGTAAACCG TERM 2455 3514016 - 3514037 + r 75 -14.5 -2.71763 | overlap 3514013 3514010 TGGCCGGAAGCGGCG GCGACTTCG GCGG CGAAGTCGC TGGTCTGCTTCTCGA Rpal_3267 3514920 - 3513994 - | translation elongation factor Ts TERM 2456 3515004 - 3515044 + r 89 -17.5 -3.15544 | opp_overlap 3515011, overlap 3515006 ATCTCAGATTTTGAC GACGGAACGATGCGGCCGG ATT CCGGCCGCATCGCCTCGTA TTACTCCGCCTCGGC TERM 2457 3515006 - 3515042 + r 95 -20.1 -3.14051 | opp_overlap 3515011, overlap 3515004 CTCAGATTTTGACGA CGGAACGATGCGGCCGG ATT CCGGCCGCATCGCCTCG TATTACTCCGCCTCG TERM 2458 3515037 - 3515011 - R 100 -23.8 -3.09635 | opp_overlap 3515006 3515004 ATTTTGACGACGGAA CGATGCGGCCGG ATT CCGGCCGCATCG CCTCGTATTACTCCG Rpal_3268 3516040 - 3515045 - | ribosomal protein S2 TERM 2459 3516223 - 3516253 + r 76 -8.1 -4.1899 | overlap 3516224 AGATCGCTCCTGAAG GCGGCGGACCGCG TATGC CGCGATCCGCCAA TTTTACCTGCCCTCA Rpal_3269 3518761 - 3516275 - | peptidase C14 caspase catalytic subunit p20 Rpal_3270 3522378 - 3518923 - | DNA polymerase III, alpha subunit TERM 2460 3520149 - 3520171 + g 74 -12.6 -3.61517 | GGTCGAAGATGGTAT CGGCGGCGTC CTT GGCGACGCCG TTCTTCACCGCGCCT TERM 2461 3520226 - 3520197 - G 75 -2.9 -4.82901 | gap 1, opp_overlap 3520197 CGCCTTCGACAAAAA TCGCGCGCTG CTTGTCCATCT CAGCGCG-GA TCTTCTTACCCATCG Rpal_3271 3522649 - 3522551 - | hypothetical protein TERM 2462 3522847 - 3522821 - H 78 -14.4 -3.07816 | overlap 3522839 GGCGCACGGATCGAA GGCGCGCGGCTT GTG AAACCGCGCGCG GCAGCTAGCGGAGAC Rpal_3272 3522867 - 3523109 + | hypothetical protein Rpal_3273 3523215 - 3523469 + | hypothetical protein Rpal_3274 3524364 - 3523666 - | ABC transporter related Rpal_3275 3525644 - 3524376 - | lipoprotein releasing system, transmembrane protein, LolC/E family Rpal_3276 3527052 - 3525736 - | prolyl-tRNA synthetase Rpal_3277 3528814 - 3527228 - | copper resistance protein CopC TERM 2463 3528685 - 3528732 + g 77 -15.4 -3.05384 | opp_overlap 3528681 3528711 3528714 GCGAGAAAGTAGTAG GCGACGTCGCCAGCGCCGCTTC AGAA GCAGGGTCGCTGGCGACGAGGC TTGCATGCGCCGCCG Rpal_3278 3529362 - 3528832 - | nuclear export factor GLE1 Rpal_3279 3529898 - 3529359 - | protein of unknown function DUF461 TERM 2464 3529709 - 3529725 + g 71 -9.3 -3.82824 | opp_overlap 3529708, overlap 3529686 3529682 TGCCGGACACCAGAC GGTCGGC GCT GCCGCCC TTGTTCTCGATGGTG Rpal_3280 3530440 - 3530027 - | hypothetical protein TERM 2465 3530334 - 3530324 - G 72 -8.2 -4.15044 | overlap 3530325 CGCGTTGGCAATAAA GCGC ACG GCGC CGATCGGCGCCAGCA TERM 2466 3530754 - 3530772 + r 100 -16 -5.61881 | TCGACAAGTTTTTCA GCAGGGCG CCG CGCCCTGC TTTTTCTTTTTAAGC Rpal_3281 3531334 - 3531053 - | protein of unknown function DUF1467 Rpal_3282 3531742 - 3531338 - | methylmalonyl-CoA epimerase Rpal_3283 3533454 - 3531784 - | beta-lactamase domain protein Rpal_3284 3534260 - 3533454 - | biotin/acetyl-CoA-carboxylase ligase TERM 2467 3534227 - 3534205 - G 91 -17 -3.75153 | opp_overlap 3534199 3534198 CCCGTGGAATCGAAA GCGGCGAGCT TAT AGCCCGCCGC TGCCGCCTTTGATCC Rpal_3285 3535700 - 3534261 - | proton-translocating NADH-quinone oxidoreductase, chain N TERM 2468 3534598 - 3534588 - G 70 -8.2 -3.95324 | overlap 3534575 3534572 3534589 CATGGCGAAGAAGAA CGCC AGC GGCG GATTGGTGCGCGACA TERM 2469 3534801 - 3534816 + g 77 -4 -4.83615 | opp_overlap 3534798, overlap 3534798 3534797 GATCGCCGAATACGC CATCAG GCGC TTGATG TTTTTCTGGCCGATC TERM 2470 3535726 - 3535765 + r 75 -12 -3.63569 | overlap 3535722 3535729 CCTTGCCGGTCACGG CAGCGCCGCTGCCTTCAC GGCA GTCACGGCGGCGGCGTAG TTGTTGACGAGTTGC TERM 2471 3535729 - 3535762 + r 77 -14.5 -2.93252 | overlap 3535722 3535726 TGCCGGTCACGGCAG CGCCGCTGCCTTCAC GGCA GTCACGGCGGCGGCG TAGTTGTTGACGAGT Rpal_3286 3537237 - 3535720 - | proton-translocating NADH-quinone oxidoreductase, chain M Rpal_3287 3539331 - 3537238 - | proton-translocating NADH-quinone oxidoreductase, chain L Rpal_3288 3539702 - 3539391 - | NADH-ubiquinone oxidoreductase chain 4L TERM 2472 3539496 - 3539448 - G 70 -11.1 -3.61398 | gap 3 GCGGTTGCGGAAGAA CACCACCAGCA-CCGC-CAGGCCG ATCG CGGCCTCCGCGGCTGC-GACGGTG AGCACCAGCAGCGCG Rpal_3289 3540337 - 3539699 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Rpal_3290 3540835 - 3540347 - | NADH-quinone oxidoreductase, chain I TERM 2473 3540683 - 3540716 + g 74 -10.1 -3.78934 | opp_overlap 3540675 GGGATAACGGCGCAG CGCGTGCTCGCCGCG GAAC CGCGGTGAGATCGGG TTCTTCTCGAAAGGA Rpal_3291 3541868 - 3540843 - | NADH dehydrogenase (quinone) Rpal_3292 3543953 - 3541878 - | NADH-quinone oxidoreductase, chain G Rpal_3293 3545284 - 3543959 - | NADH-quinone oxidoreductase, F subunit Rpal_3294 3545518 - 3545303 - | hypothetical protein TERM 2474 3545496 - 3545524 + g 87 -14.5 -3.8211 | TCCGCGACGGCGCGC CCCGCCGGGGCGA TCG TCGTCATGGCGGG TTCTTCTCGGTGGCG Rpal_3295 3546264 - 3545515 - | NADH-quinone oxidoreductase, E subunit Rpal_3296 3547238 - 3546267 - | methyltransferase FkbM family Rpal_3297 3548443 - 3547235 - | NADH dehydrogenase I, D subunit TERM 2475 3547513 - 3547539 + g 75 -14.4 -3.29273 | overlap 3547511 CTTCCATCGAGCGCT TCATCTCGCCGC GGC GCGGCGGGAAGA TCTTGTGGTCGTCGA Rpal_3298 3549109 - 3548495 - | NADH (or F420H2) dehydrogenase, subunit C TERM 2476 3549138 - 3549151 + r 75 -3.7 -4.77165 | overlap 3549139 TCAGCGTTCGATAGT GCCGG TCCG CCGGA TTTTCTTCTGCAGCA Rpal_3299 3549719 - 3549123 - | NADH-quinone oxidoreductase, B subunit Rpal_3300 3550096 - 3549731 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Rpal_3301 3550409 - 3550603 + | hypothetical protein TERM 2477 3550649 - 3550667 + F 81 -10.2 -4.20084 | ACAGAGGATTGAGAG GGCCGCCA CTT TGGCTGCC TTTTGCATAGCTGAT Rpal_3302 3551412 - 3551723 + | histone family protein DNA-binding protein TERM 2478 3551856 - 3551886 + F 100 -14.7 -4.85782 | gap 1, opp_overlap 3551856 GTTCAGATTGAAGAA CGGCAGGCTTGGGC ATCC GCCCC-GCCTGCCG TTTCTTTTTGGCAAC TERM 2479 3551886 - 3551856 - f 88 -14.7 -3.70773 | gap 1, opp_overlap 3551856 GTTCAGATTGAAGAA CGGCAGGCTTGGGC ATCC GCCCC-GCCTGCCG TTTCTTTTTGGCAAC Rpal_3303 3552021 - 3553274 + | peptidase T TERM 2480 3553318 - 3553329 + F 76 -5.8 -4.55689 | opp_overlap 3553306, overlap 3553304 GCACGATGGCGCGCA TCGC CGCC GCGA TTTTGTCTCAATCGT Rpal_3304 3553423 - 3554667 + | efflux transporter, RND family, MFP subunit TERM 2481 3555820 - 3555844 + G 78 -14.3 -3.55071 | GGTCCCCGCCACCAC CGTGCCGGTGA CGA TCATCGGCGCG TTTGCGGCGATGTCG Rpal_3305 3554696 - 3557836 + | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family TERM 2482 3560286 - 3560326 + G 71 -12.6 -3.25823 | gap 1 CCGGCACGATCGCCG GCTGCGAAGC-GCTGCTGC GCTG GCAGCATCCGGTTCGCGGC TTCGTCTCGCCAGCC TERM 2483 3560971 - 3560952 - g 91 -16.4 -3.84719 | ACGCCGAAACGCAAA CGGCGCCC CGAA GGGCGCCG TCGATGTCGATGTAG Rpal_3306 3558335 - 3560986 + | diguanylate cyclase/phosphodiesterase Rpal_3307 3563431 - 3560999 - | ATP-dependent protease La TERM 2484 3561041 - 3561062 + g 78 -13.7 -3.61589 | overlap 3561037 TTCGTCGGCTTCGGC GCTGTCCGG GGTG CCGGGCAGC TTGGTTTCCTCTTCC TERM 2485 3561224 - 3561251 + g 77 -13.4 -3.50853 | gap 1 GATCAGCACCGTCTT GATGC-CGCCGCG GGC CGCGGCGAGCAGC TTCTCCTTGAGGCCG Rpal_3308 3565026 - 3563752 - | ATP-dependent Clp protease, ATP-binding subunit ClpX Rpal_3309 3566057 - 3565419 - | Endopeptidase Clp TERM 2486 3566117 - 3566107 - R 90 -8.2 -4.87665 | overlap 3566108 CGGGAGCGACAAAAA CGGC TCC GCCG CAGGCGTTCGCCCCG TERM 2487 3566343 - 3566315 - R 100 -22.5 -4.09685 | opp_overlap 3566309 3566305 3566304 3566339 CCTGACGGCGCAAAA CGGCCGCCGTGAC GGT ATCACGGCGGCCG CAGCGATGATTCTCA Rpal_3310 3567728 - 3566370 - | trigger factor TERM 2488 3567018 - 3567036 + g 75 -16 -2.70932 | CTCGGCCGGCTTACC CGCCAGCG TCT CGCTGGCG TAGTTGGCCGGGAAC Rpal_3311 3568592 - 3568119 - | hypothetical protein TERM 2489 3568757 - 3568778 + G 75 -9.3 -4.11216 | overlap 3568758 GTGCTGAAGCCGGGC GCGGCTGCG GTTG CGCGGCCGA TTTTGAGCCTCGAGG TERM 2490 3568915 - 3568945 + G 71 -12.4 -3.23984 | opp_overlap 3568914, overlap 3568940 GCCACTGGTGAAGAT GCAGCCGGTGCCGC CCG GCGGCAGCGACAGC TTCCTGCTGACTTTG Rpal_3312 3568598 - 3569920 + | multicopper oxidase type 2 Rpal_3313 3571468 - 3569969 - | carbohydrate kinase, YjeF related protein TERM 2491 3570702 - 3570675 - G 72 -14.8 -2.79183 | gap 1, opp_overlap 3570676 GCCACCGTCACCAGA CCCGCGCCGGCGC GGA GCG-CGCCGCGGG CGGCCAGCCGCGCCG TERM 2492 3570676 - 3570723 + g 81 -14.6 -3.53811 | gap 1, opp_overlap 3570675 CCACCGTCACCAGAC CCGCGCCGGCGCGG-AGCGCGCC GCG GGCGGCCAGCCGCGCCGCCCCGG TTTGCGACAGCTCGC TERM 2493 3570988 - 3571004 + g 76 -15.1 -3.16742 | TTGCCGCGCCCATCA CGGCGCC GGT GGCGCCG TTGATGCCGCTTGGC Rpal_3314 3571880 - 3572218 + | nitrogen regulatory protein P-II TERM 2494 3572256 - 3572276 + F 95 -18.3 -3.53012 | CCTGATCGCATCACC TGGCGGCCG ATC CGGCCGCCA TTTCACGACGACCCG TERM 2495 3572665 - 3572706 + G 81 -12.1 -3.82084 | overlap 3572681 GCCCAGGTCAAGGCG CTCGGCATCGGCGACAGCG TGTT CGTCGGCCCCGAAGCCGAG TTCTTCGTGTTCGAC Rpal_3315 3572308 - 3573717 + | glutamine synthetase, type I TERM 2496 3573739 - 3573770 + F 100 -15.2 -4.65895 | opp_overlap 3573745, overlap 3573745 CGGCGACAACATTCA GGGAAAGGCGCTCC TCGC GGGGCGCCTTTTTC TTTTTGGATCGAACA TERM 2497 3573745 - 3573764 + F 100 -12.8 -5.63236 | opp_overlap 3573745, overlap 3573739 CAACATTCAGGGAAA GGCGCTCC TCGC GGGGCGCC TTTTTCTTTTTGGAT TERM 2498 3573764 - 3573745 - f 74 -10.6 -3.68506 | opp_overlap 3573745 3573739 CAACATTCAGGGAAA GGCGCTCC TCGC GGGGCGCC TTTTTCTTTTTGGAT Rpal_3316 3574002 - 3574751 + | transcriptional regulator, TetR family Rpal_3317 3574764 - 3575375 + | hypothetical protein Rpal_3318 3576795 - 3575518 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Rpal_3319 3577430 - 3576792 - | dethiobiotin synthase Rpal_3320 3578557 - 3577427 - | 8-amino-7-oxononanoate synthase TERM 2499 3578253 - 3578229 - G 71 -14.3 -2.84634 | opp_overlap 3578249 TCGTACAGTACGAGA TCGCCACGCTG CGG CAGCGTCGCGA AGATCGCGTGATTGG Rpal_3321 3579261 - 3578698 - | hypothetical protein TERM 2500 3578914 - 3578900 - G 70 -8.5 -4.00042 | opp_overlap 3578912 3578913 TCGTCGACGAAATAA CCGCG GTCGT CGCGG CGCATGCGCCATTTG Rpal_3322 3580780 - 3579350 - | Amidase TERM 2501 3580319 - 3580297 - G 81 -11.3 -4.11216 | gap 1 GGGCCACCGGCAAAA TGCGCGCCGC CACC GCGGC-CGCA GCGCCGCCCGACGAG TERM 2502 3580482 - 3580441 - G 70 -13.5 -3.01712 | overlap 3580463 3580464 CGCTCTTGCCGAAGA TCGTCACGCCGGCGGCGAG AAAC CGCCCCGCCAGCGTGCCGG TGTGGGGCGCAACGA Rpal_3323 3581969 - 3580980 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 2503 3582001 - 3582026 + r 95 -2.4 -5.71712 | overlap 3581999 CTTGTTCGTTGTCCG CGCCGCTCGT GAGATG GCGGGCGATG TTTTTTTGTATCAGG Rpal_3324 3582977 - 3582078 - | protein of unknown function DUF6 transmembrane TERM 2504 3583109 - 3583150 + H 83 -7 -4.93696 | opp_overlap 3583102 3583101 3583116, overlap 3583117 AAAAATACCTGCCCT GTGAACAGCGGGCGCAGG CGCGAT CCAGCGCCCGCCGCCGAC TTTTTCGTCTTTGGA TERM 2505 3583143 - 3583116 - H 81 -15.5 -3.01712 | opp_overlap 3583109 3583117, overlap 3583101 CCTGCCCTGTGAACA GCGGGCGCAGG CGCGAT CCAGCGCCCGC CGCCGACTTTTTCGT TERM 2506 3584680 - 3584664 - g 71 -9.3 -3.79906 | CGATCCGGAGAAGAA CCCGGCG CTG CGCCGCG AGGTCAAGCTGGCGC TERM 2507 3587266 - 3587220 - g 85 -10.1 -4.18018 | GTCGCCGACCGAAAA GCTGGAAGCGCTGCAGTGG-AGC AAA GCCACCACCGCCGCGA-CCCAGC CCGCCCCGAGCAAGG Rpal_3325 3583642 - 3587415 + | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent TERM 2508 3587422 - 3587458 + F 100 -26.9 -4.47551 | opp_overlap 3587422 3587427, overlap 3587427 TGCTCGTAAACTAAA GAAAAGGGCTTCCCGAT CTC ATCGGGAAGCCCTTTTC TTTTCTGAATTAAAT TERM 2509 3587458 - 3587422 - f 100 -26.9 -4.05788 | opp_overlap 3587422 3587427, overlap 3587427 TGCTCGTAAACTAAA GAAAAGGGCTTCCCGAT CTC ATCGGGAAGCCCTTTTC TTTTCTGAATTAAAT TERM 2510 3587427 - 3587453 + F 100 -21 -5.19275 | opp_overlap 3587427 3587422, overlap 3587422 GTAAACTAAAGAAAA GGGCTTCCCGAT CTC ATCGGGAAGCCC TTTTCTTTTCTGAAT TERM 2511 3587453 - 3587427 - f 100 -21 -5.04868 | opp_overlap 3587422 3587427, overlap 3587422 GTAAACTAAAGAAAA GGGCTTCCCGAT CTC ATCGGGAAGCCC TTTTCTTTTCTGAAT TERM 2512 3587527 - 3587541 + F 71 -5.6 -4.25256 | overlap 3587528 TTGGCCTCCAACACC TCGGTC GAT GACCGC TTATTTTGATCGCAA TERM 2513 3588997 - 3588942 - g 74 -2.1 -4.71061 | gap 3, overlap 3588943 3588955 AGCCATACCCAAAAA GCCTCGCATCAG-ACCTTC-ACTCAGAT TCC ATCCGAATCGAAGGTGCAGATA-GAGGA CATTATCAAAAATTC Rpal_3326 3587744 - 3589258 + | CMP/dCMP deaminase zinc-binding Rpal_3327 3589422 - 3589670 + | hypothetical protein Rpal_3328 3590044 - 3589772 - | hypothetical protein TERM 2514 3590473 - 3590490 + H 77 -4 -4.8622 | overlap 3590475 AACGCTGATCGTCGG CACGGC CCCTCC GCCGCG TTTTTCCTTGCCACG Rpal_3329 3590570 - 3591151 + | hypothetical protein TERM 2515 3592240 - 3592205 - g 83 -9.7 -4.35524 | gap 1, overlap 3592198 TGGGCAAAGGCAAAA GCGAGCCGCTGAGC GTCGCGCTG GC-CAGCGGCACGC AATCCGTCACGTTGA Rpal_3330 3591985 - 3592464 + | hypothetical protein TERM 2516 3593199 - 3593179 - g 70 -3.9 -4.44667 | CTGCCTAAGAACAAA CGCGGAG TTCTTTG CCCCACG CGGCCCTCTAGGTGC Rpal_3331 3592769 - 3593377 + | hypothetical protein TERM 2517 3593562 - 3593537 - T 77 -14.7 -2.88544 | opp_overlap 3593535 3593534 GTTGAGCGGGACAGA TCATCGGCCGG GAGA CCGGCCGGTGA GGGTTTGGCGAAGCT Rpal_3332 3595571 - 3594354 - | hypothetical protein Rpal_3333 3596422 - 3595583 - | hypothetical protein Rpal_3334 3596777 - 3596427 - | hypothetical protein Rpal_3335 3597217 - 3596774 - | hypothetical protein Rpal_3336 3598210 - 3597233 - | hypothetical protein TERM 2518 3597291 - 3597329 + g 82 -6.1 -4.7254 | gap 2, overlap 3597284 3597281 3597292 GTAATGCCGGCGCAG C-TCTCGACGA-CGAGTTG CAG CGCCTCGCTTGTCGAGATG TTTTTCGTCCAACCT TERM 2519 3597292 - 3597327 + g 77 -9.8 -3.98256 | gap 1, overlap 3597284 3597281 3597291 TAATGCCGGCGCAGC TCTCGACGA-CGAGTTG CAG CGCCTCGCTTGTCGAGA TGTTTTTCGTCCAAC Rpal_3337 3598554 - 3598204 - | peptidase M23B Rpal_3338 3598991 - 3598554 - | hypothetical protein Rpal_3339 3599433 - 3598996 - | hypothetical protein Rpal_3340 3599846 - 3599430 - | hypothetical protein Rpal_3341 3600244 - 3599855 - | hypothetical protein Rpal_3342 3602790 - 3600241 - | hypothetical protein Rpal_3343 3603265 - 3602792 - | GCN5-related N-acetyltransferase Rpal_3344 3603915 - 3603265 - | hypothetical protein Rpal_3345 3604535 - 3603912 - | hypothetical protein Rpal_3346 3606580 - 3604532 - | hypothetical protein TERM 2520 3604663 - 3604674 + g 72 -5.8 -4.35926 | TTCCCTTCGCGACGT CCGT CACC ACGG TTTTCAGTTTGCCGT Rpal_3347 3606924 - 3606583 - | hypothetical protein Rpal_3348 3607346 - 3607017 - | hypothetical protein Rpal_3349 3608300 - 3607359 - | hypothetical protein TERM 2521 3608324 - 3608348 + r 70 -10.6 -3.57406 | overlap 3608311 3608322 CTCCGTCTTCGCTTT GCGCGCCGGC TTGGT GTCGGCGGGC TGTTTGTCGTCAGGC Rpal_3350 3608473 - 3608303 - | hypothetical protein Rpal_3351 3608916 - 3608470 - | hypothetical protein TERM 2522 3608605 - 3608547 - G 71 -14.5 -2.64616 | opp_overlap 3608596, overlap 3608565 3608568 TGGTCACCGACACCA GCCGGCC-GCGGCGGAACATCAGGACGCC GCT GGCGTCCTCGGGTCCC-CAGCCGGCCAGC GCGGCGGTGACGGCA Rpal_3352 3609473 - 3608913 - | phage virion morphogenesis protein Rpal_3353 3609901 - 3609473 - | protein of unknown function DUF1320 Rpal_3354 3610232 - 3609906 - | hypothetical protein Rpal_3355 3610875 - 3610414 - | hypothetical protein TERM 2523 3610553 - 3610537 - G 79 -11.5 -3.84451 | opp_overlap 3610537 3610538 GCGCGTAAAGGCAAA GCCGGCA CGG CGCCGGC CGCGATCGGATTTCG TERM 2524 3610705 - 3610747 + g 85 -18.2 -2.62184 | CTTGGTGACAGTGGT GGCGGCCGGCTCGGCGACGG AGC CGGCCGCCGGAGCGGCCGCC TGGTCTGCGGCGGCG Rpal_3356 3611777 - 3610887 - | Mu-like prophage major head subunit gpT-like protein Rpal_3357 3612606 - 3611830 - | hypothetical protein TERM 2525 3611900 - 3611952 + g 71 -14.7 -2.57132 | overlap 3611899 3611902 3611930 CCGCCGACAGTGAGC GACAGCTCGTCGCCGACTGCGGTGA CGT TGGCGGCGGTCGGCGTGGCGCTGTC CTTGTCGCCGGCGGC Rpal_3358 3613868 - 3612762 - | Mu-like prophage I protein-like protein TERM 2526 3614111 - 3614090 - R 72 -7.9 -4.13767 | gap 1, overlap 3614067 3614066 GTCGCCAGTCCAAAA CCGGGGACCG CAC CGG-CGCCGG CGGAAATCGCCCCAG TERM 2527 3614112 - 3614170 + r 72 -3.7 -4.56914 | gap 2, opp_overlap 3614118 3614119, overlap 3614119 CCGCACCGGCGCCGG CGGAAATCGCCCCAGCCCCGAGGGCTGGG ATG CCCAGCGC-CGGGCTTCAGGCG-TTTCAA TTTTAGTTTAAATAA TERM 2528 3614119 - 3614164 + r 83 -11.7 -3.97356 | gap 1, opp_overlap 3614119 3614118, overlap 3614112 GGCGCCGGCGGAAAT CGCCCCAGCCCCGAGGGCTGGG ATG CCCAGCGC-CGGGCTTCAGGCG TTTCAATTTTAGTTT TERM 2529 3614143 - 3614119 - R 72 -13.5 -2.71712 | opp_overlap 3614112 3614119, overlap 3614118 GGCGCCGGCGGAAAT CGCCCCAGCCC CGA GGGCTGGGATG CCCAGCGCCGGGCTT TERM 2530 3614214 - 3614188 - R 83 -6.4 -4.88918 | overlap 3614189 TTAGTTTAAATAAAA TCCCGCTCCCTT CGC AGGGGACCGGGC CCGAAAAGCGTCTCT Rpal_3359 3614708 - 3614253 - | hypothetical protein TERM 2531 3614549 - 3614578 + g 85 -9.9 -4.18197 | CCGCAGCTTCAATCC GGCGATAGCTCGA TGGA TCGAGCAGCCGCC TTTTGAGTGAGGCCT Rpal_3360 3615367 - 3614723 - | putative phage repressor TERM 2532 3615185 - 3615207 + g 74 -14.9 -3.06815 | overlap 3615192 GATTACGTGGTTCGC GCGGGCTTG CGGGA CAAGCCCGC TCTCTTCGGCCAGAT Rpal_3361 3615468 - 3615728 + | hypothetical protein TERM 2533 3615759 - 3615793 + G 73 -10.6 -3.73936 | opp_overlap 3615759, overlap 3615760 3615787 CCGCGCCTGAGAAAT TCGCGGTCGCCCGC ATGATCG GTGGGCGGCCGAGG TTCTTCCTCGGCTTT TERM 2534 3615787 - 3615805 + G 72 -11.7 -3.53012 | opp_overlap 3615759, overlap 3615760 3615759 CATGATCGGTGGGCG GCCGAGG TTCTT CCTCGGC TTTGCCGAACAGACA Rpal_3362 3615725 - 3615997 + | hypothetical protein Rpal_3363 3615994 - 3616449 + | hypothetical protein Rpal_3364 3616446 - 3616775 + | hypothetical protein Rpal_3365 3616795 - 3618951 + | Integrase catalytic region Rpal_3366 3618984 - 3619421 + | hypothetical protein Rpal_3367 3619450 - 3620244 + | transposase protein B TERM 2535 3620444 - 3620412 - g 79 -11.2 -3.93695 | gap 1, opp_overlap 3620412 GTGATCATCGATAAA GCGCAGGCGGC-GCG CTAT CTCTGCCGGCTGCGC GAGGCAGGCATCCTG Rpal_3368 3620241 - 3620621 + | hypothetical protein Rpal_3369 3620618 - 3621013 + | putative transcriptional regulator Rpal_3370 3621003 - 3621290 + | hypothetical protein Rpal_3371 3621287 - 3621640 + | hypothetical protein Rpal_3372 3621642 - 3622190 + | Mu Gam family protein Rpal_3373 3622187 - 3622582 + | transcriptional repressor, LexA family TERM 2536 3622653 - 3622631 - g 76 -14.8 -3.14051 | overlap 3622629 GGACGGTGAGGAAGA CACCGCCGGC AGC GCCGGCCGTG CGCATCGCGATCACC Rpal_3374 3622579 - 3623076 + | Chromosomal replication initiator DnaA domain Rpal_3375 3623073 - 3623774 + | protein of unknown function DUF1018 Rpal_3376 3623776 - 3624174 + | hypothetical protein TERM 2537 3624465 - 3624419 - g 72 -11.6 -3.53012 | gap 3, overlap 3624423 CGGGTGTGGTCGAAA CTCAGCGCGCGGCCAAGACCGCG ACGC CGCGG-C--GGCCGCGCAACGAG GCCGTGATCCGCACC Rpal_3377 3624178 - 3624759 + | GcrA cell cycle regulator Rpal_3378 3624746 - 3624925 + | hypothetical protein Rpal_3379 3624922 - 3625134 + | phage-related hypothetical protein Rpal_3380 3625131 - 3625370 + | hypothetical protein TERM 2538 3625394 - 3625443 + G 77 -12.8 -3.68351 | CTGCCCGGCGTGCTG GCTGAGATCGCCGAGGTTGCGG GTGAAA CCGCTGCCTTGAAGATCTCGGC TTTGCATGGTGGGCA Rpal_3381 3625367 - 3625762 + | hypothetical protein TERM 2539 3626100 - 3626138 + G 80 -9.4 -4.1891 | opp_overlap 3626093 3626102 3626104, overlap 3626096 CTGCAATACTGGAAT CAGATCCGCGGCGACGAG CTA CCCGCCGGCGTCGATCTG TTTCTGTTCGACAGC Rpal_3382 3625869 - 3626783 + | protein of unknown function DUF847 TERM 2540 3627131 - 3627096 - gf 76 -8.3 -4.14511 | gap 2 AATTCCAGCTCAAAA GC-GCCGC-CGACACCG CGGC CGATGCCGAGCAGCTGC GACGGGCGGCCGAGG TERM 2541 3627223 - 3627193 - gf 75 -4.6 -4.63527 | gap 1, overlap 3627194 3627195 TGATTACTGCAAAAA GTTCGGC-TGCGG AGACGA CCGCAAGCCGCCC GCGCCGGAAATGGGC Rpal_3383 3626780 - 3627328 + | hypothetical protein Rpal_3384 3627276 - 3627518 + | hypothetical protein Rpal_3385 3627521 - 3627901 + | hypothetical protein Rpal_3386 3627898 - 3628194 + | hypothetical protein Rpal_3387 3628199 - 3628819 + | Mu-like prophage FluMu protein GP27 TERM 2542 3628847 - 3628893 + G 71 -9.3 -3.85698 | gap 1, opp_overlap 3628873 TCGTGGTCTATCTCG CT-GGCAGCAGCGGGACCGTCA ACAA TGGCGGGCCAGCTACCGCCGAG TTTGTCACCCGCGAA Rpal_3388 3628816 - 3629028 + | hypothetical protein Rpal_3389 3629051 - 3629548 + | hypothetical protein Rpal_3390 3629545 - 3629889 + | hypothetical protein TERM 2543 3630068 - 3630011 - g 73 -12.8 -3.4072 | gap 3, overlap 3629990 3629988 3630062 GATCGGCTATCAGAA GCGCCTGCTCGCCTCG-ACGGCGCTGCAC CAG GT-CA-CGCTGTGCGAGAAGAGCCGGCGC ATCGGTGCGACCTGG Rpal_3391 3629886 - 3631520 + | Mu-like prophage FluMu protein GP28 TERM 2544 3631663 - 3631648 - g 71 -3.2 -4.65895 | CGCCGGATCGAAAAA GCCGGT CTGC ACCAAC ATGCTCGCGGCGGCA Rpal_3392 3631517 - 3631744 + | hypothetical protein Rpal_3393 3631744 - 3633375 + | protein of unknown function DUF935 Rpal_3394 3633368 - 3634132 + | phage head morphogenesis protein, SPP1 gp7 family Rpal_3395 3635310 - 3634966 - | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 2545 3635056 - 3635086 + g 82 -15.4 -3.4072 | opp_overlap 3635048 GCAATGATCGACCAG GGTCTGGCGCAGCG CGA CGCTGAGCGAGACC TTCTGCTCCGGCGTG Rpal_3396 3635504 - 3636349 + | hypothetical protein TERM 2546 3636972 - 3636987 + G 75 -11.8 -3.68222 | CGAGCCGGACGGCCT GCCGCC GGAC GGCGGC TTCTTCCGGTTCGAA Rpal_3397 3636475 - 3637014 + | GCN5-related N-acetyltransferase Rpal_3398 3637076 - 3638056 + | Alcohol dehydrogenase zinc-binding domain protein Rpal_3399 3638670 - 3638191 - | hypothetical protein TERM 2547 3638761 - 3638800 + r 75 -12.1 -3.61398 | gap 1 TGTGAGGCGATCTGC CGCGGTCAAGGCCGCTCC TTGAC GGAGCGGCCTCCGC-GCG TTGTTACCAGCCGCG Rpal_3400 3639100 - 3638804 - | hypothetical protein TERM 2548 3639437 - 3639467 + r 74 -12.4 -3.53012 | opp_overlap 3639425, overlap 3639461 CGATCACTTCGGCGC GGGCGACGAGCCGA CTG TCGGCGCGCCGGCC TTTGCCGGGCCGAGC Rpal_3401 3639997 - 3639425 - | hypothetical protein Rpal_3402 3640792 - 3640139 - | protein of unknown function UPF0126 Rpal_3403 3641803 - 3640925 - | transcriptional regulator, LysR family Rpal_3404 3641912 - 3643483 + | NADH/Ubiquinone/plastoquinone (complex I) TERM 2549 3643655 - 3643713 + G 73 -14.4 -3.14132 | gap 1 ATCGGCGAGCCGCTC GCG-GTCGCGGCCGCACGGCTGCGCCG CGTCGC CGGCGCCGCCGTGACGATGCCACGCGC TTGGTACGCCGAGCG Rpal_3405 3643505 - 3645931 + | hypothetical protein TERM 2550 3646121 - 3646100 - f 100 -3.7 -5.5112 | overlap 3646102 TCGATGAATAAAAAA CACATAGGA CCTC TCCCATGCA AAACATCGAACCTCC TERM 2551 3646119 - 3646102 - f 73 -6.3 -4.39002 | overlap 3646100 GATGAATAAAAAACA CATAGGA CCTC TCCCATG CAAAACATCGAACCT Rpal_3406 3646117 - 3646377 + | hypothetical protein Rpal_3407 3646381 - 3647304 + | dihydrodipicolinate synthase Rpal_3408 3647782 - 3647336 - | putative PTS IIA-like nitrogen-regulatory protein PtsN Rpal_3409 3648489 - 3647806 - | two component transcriptional regulator, winged helix family Rpal_3410 3651218 - 3648495 - | osmosensitive K+ channel signal transduction histidine kinase Rpal_3411 3651869 - 3651264 - | potassium-transporting ATPase, C subunit TERM 2552 3651368 - 3651310 - G 75 -15.3 -2.79183 | TTGAGCTTCAGCACA TTGACCCGCGACTCG-CCGAGCACGCCGC CGA GCGGC-TGCTCGATCGAGGCGCCGACCAG CTTCCGGATCTGCTC Rpal_3412 3654002 - 3651882 - | K+-transporting ATPase, B subunit Rpal_3413 3655724 - 3654021 - | potassium-transporting ATPase, A subunit Rpal_3414 3655883 - 3655764 - | K+-transporting ATPase, F subunit Rpal_3415 3656655 - 3657215 + | hypothetical protein Rpal_3416 3657253 - 3657963 + | hypothetical protein Rpal_3417 3659857 - 3657953 - | K potassium transporter TERM 2553 3660404 - 3660383 - g 77 -5.7 -4.63527 | overlap 3660384 CGACGATTCGAAAAA GGTCTGGCC CACG GGCCTGACG ATTGCGGAATCCGAG Rpal_3418 3660363 - 3660518 + | antenna complex alpha/beta subunit Rpal_3419 3660531 - 3660728 + | antenna complex alpha/beta subunit Rpal_3420 3661888 - 3661250 - | hypothetical protein TERM 2554 3661331 - 3661307 - G 72 -8.5 -4.08394 | opp_overlap 3661313 3661321 AGACGTGCCGGAAAA CGAACTGTAGG CGT CCTTCTGTTCG ATCAACAAAGGTGTT TERM 2555 3662028 - 3661973 - R 76 -14.1 -3.2218 | gap 2, opp_overlap 3662024, overlap 3661965 3661963 3661955 3662024 3662026 GGGAAGAGCCAGGAA GCCTGGCTGACCGCGGTAGCCGGGATC CTCG GACCCCAGCCACCGCAG-CAAC-AGTC AGCGACTGTCTTAGA Rpal_3421 3662218 - 3662039 - | antenna complex alpha/beta subunit Rpal_3422 3662386 - 3662231 - | antenna complex alpha/beta subunit TERM 2556 3662725 - 3662742 + H 74 -5.5 -4.42386 | overlap 3662728 TGTGCCAACCGACCA CGACACC GCCA GGTGTAG TTTTCTCCGTGAAGA Rpal_3423 3662806 - 3663513 + | two component transcriptional regulator, LuxR family TERM 2557 3663915 - 3663933 + G 78 -16 -3.08813 | opp_overlap 3663891 CGATCGGTGACCTGA TCGGCCGC TCT GCGGCCGA TGTCTTCGACTCGGA Rpal_3424 3663737 - 3666013 + | GAF sensor signal transduction histidine kinase Rpal_3425 3666017 - 3668344 + | GAF sensor signal transduction histidine kinase Rpal_3426 3668345 - 3668809 + | response regulator receiver protein Rpal_3427 3668806 - 3669942 + | response regulator receiver sensor signal transduction histidine kinase TERM 2558 3669975 - 3669949 - T 80 -14.4 -3.18274 | opp_overlap 3669950 CCGAGCTGAAGCGAA GCGGCGCCGAGT AAG ACTCGACGCCGT TTCGGCCGCTCATCC TERM 2559 3669950 - 3669974 + T 86 -15.7 -3.54741 | opp_overlap 3669949 CGAGCTGAAGCGAAG CGGCGCCGAGT AAG ACTCGACGCCG TTTCGGCCGCTCATC Rpal_3428 3673279 - 3670049 - | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family TERM 2560 3673430 - 3673466 + r 83 -15.1 -3.21099 | CTGCGCGACCGTCTT GCTCGAGGCGGCGGC ATCCATC GCCACCGTCTCGGGC TTGATGGTGACGCCG Rpal_3429 3674608 - 3673409 - | efflux transporter, RND family, MFP subunit TERM 2561 3673870 - 3673880 + g 72 -6.8 -4.25104 | GAATCCGTTCGATCG CACC CGG GGTG TTTTCGTCCGCGAGG TERM 2562 3674476 - 3674464 - G 70 -10.5 -3.65351 | opp_overlap 3674467 3674468 3674470, overlap 3674465 CGAGCGCCACCGAAA CCGGC ACC GCCGG CGGAGGCGCCGCGGT Rpal_3430 3674806 - 3675393 + | transcriptional regulator, TetR family TERM 2563 3676342 - 3676369 + F 71 -13.4 -2.53715 | gap 1, overlap 3676341 GCGTCGGCGCCGACG GCGTCGCCGCACG GTT CG-GCGGCGACGA GTTCATGCTGCTGAA Rpal_3432 3676823 - 3677809 + | aldo/keto reductase TERM 2564 3677840 - 3677870 + T 84 -15.4 -3.28712 | overlap 3677835 GTGGTATTAGGTCTT CGGCTTTGCCGCCG GCT TGTCGGCGAAGCCG TTGTAGCAGGCGAGC Rpal_3433 3678229 - 3677831 - | hypothetical protein Rpal_3434 3678468 - 3678704 + | hypothetical protein Rpal_3435 3678750 - 3679400 + | Abortive infection protein Rpal_3436 3681272 - 3679410 - | K potassium transporter TERM 2565 3680145 - 3680127 - G 72 -13.2 -3.14881 | overlap 3680115 CAATGCGGCGACGAA CGACACCA GGA TGGTGTCG ATCATCATCGTGCCG Rpal_3437 3682369 - 3681533 - | Sel1 domain protein repeat-containing protein TERM 2566 3681603 - 3681641 + g 73 -5.9 -4.33274 | gap 2, overlap 3681604 CAATCGCTCCGCTTC AGC-GCCGC-CTTGGCGTC GGC GTTGCCGAGCGCGGCAGCC TTTTCGTAGTATGCC TERM 2567 3681722 - 3681749 + g 83 -12.6 -4.07687 | opp_overlap 3681704 3681722 CCCCATCTGCATCAA GGCGCCGGGGTG GCCC TGCCCCGCCGCC TTTTCAAACAGAGCT Rpal_3438 3682670 - 3682843 + | protein of unknown function DUF1328 Rpal_3439 3683019 - 3683315 + | hypothetical protein TERM 2568 3683367 - 3683391 + T 100 -17.1 -4.21471 | opp_overlap 3683367 TTTGACCAAAAAAAA CGCCGCGGGCT GTT AGCACGCGGCG TTGTTGTTTTGCGGT TERM 2569 3683391 - 3683367 - T 100 -17.1 -5.86061 | opp_overlap 3683367 TTTGACCAAAAAAAA CGCCGCGGGCT GTT AGCACGCGGCG TTGTTGTTTTGCGGT Rpal_3440 3684039 - 3683416 - | GCN5-related N-acetyltransferase Rpal_3441 3684692 - 3684294 - | thioesterase superfamily protein Rpal_3442 3686120 - 3684840 - | acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Rpal_3443 3686253 - 3686516 + | hypothetical protein Rpal_3444 3686940 - 3686545 - | hypothetical protein Rpal_3445 3687321 - 3687073 - | hypothetical protein TERM 2570 3687264 - 3687234 - G 84 -17 -3.18264 | CGTCCCACCCACGAA TTGTTTCGTCGGAC CTC GGCCGACGAAACAA TTCGGAGAAAAGCAT Rpal_3446 3687777 - 3688037 + | hypothetical protein TERM 2571 3688132 - 3688181 + T 87 -18.8 -2.71783 | gap 1, overlap 3688139 TAACGGCAGCTCTTG GATCACGTCGGCGCTTC-GCTGT TGATC GCAGCCGAAGCGCCGATTTGATC GTTACTTGATTTTGA TERM 2572 3688139 - 3688174 + T 95 -16.3 -3.86776 | gap 1, overlap 3688132 AGCTCTTGGATCACG TCGGCGCTTC-GCTGT TGATC GCAGCCGAAGCGCCGA TTTGATCGTTACTTG Rpal_3447 3688748 - 3688200 - | CreA family protein Rpal_3448 3688960 - 3690573 + | ErfK/YbiS/YcfS/YnhG family protein Rpal_3449 3690727 - 3691665 + | polysaccharide deacetylase Rpal_3450 3691703 - 3692266 + | hypothetical protein Rpal_3451 3692711 - 3692274 - | DoxX family protein TERM 2573 3692696 - 3692685 - G 72 -7.2 -4.28188 | GATGGAGAACAGAAA GCGC CCGA GCGC AATCAAGGCCGGCAT Rpal_3452 3695126 - 3692817 - | Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase TERM 2574 3695026 - 3695005 - G 72 -11.5 -3.61517 | opp_overlap 3695009, overlap 3695006 ACGCCGGGGGAATAA GCCAGCGCG AGGT CGCGCTGGT TGGCGAGAGGCTTCG TERM 2575 3695025 - 3695006 - G 72 -15 -2.76696 | opp_overlap 3695009, overlap 3695005 CGCCGGGGGAATAAG CCAGCGCG AGGT CGCGCTGG TTGGCGAGAGGCTTC Rpal_3453 3696947 - 3695172 - | aspartyl-tRNA synthetase TERM 2576 3698625 - 3698613 - g 70 -6.2 -4.25104 | overlap 3698614 CCCCTTCGAGGAAAA GGCG GAATT CGCC CGCTATGCGGAGCCG Rpal_3454 3697207 - 3698685 + | protein of unknown function UPF0061 Rpal_3455 3698789 - 3699967 + | ribonuclease D TERM 2577 3700499 - 3700451 - g 73 -15.3 -2.52543 | gap 1 ACGCGCCCGAAGTGA TCCTCGCGGCGATGCAG-GCCG AGCTGG CGGCGCTGCATCGCAGCGGCGA GCTGCGCGACATCCC Rpal_3456 3699964 - 3700887 + | protein of unknown function UPF0187 Rpal_3457 3702414 - 3700909 - | Ppx/GppA phosphatase TERM 2578 3701153 - 3701173 + g 70 -10.3 -3.68988 | TCGGTCACCAGCTCG CGGGCCGAC ATC GGCGGCTCG TTCTGTTCGCTGAAG TERM 2579 3702102 - 3702127 + g 75 -11.8 -3.65046 | CGCCGCAGATCCGTT CGGCCTCGGC GATGAA GTCGGGGCCG TTCTTGGCGTCGCGG TERM 2580 3702452 - 3702486 + r 73 -12.7 -3.14463 | TGCTGGGACTGCTGG CGCTCGGCCCGCCGG GTAAG CCGGCGGGGCGAGGA TTCCTGGAGCGACTT Rpal_3458 3704637 - 3702427 - | Polyphosphate kinase TERM 2581 3704559 - 3704591 + g 95 -16.9 -3.84644 | opp_overlap 3704555 3704554, overlap 3704554 3704563 GATTGATGAATCGCT CGGGGCCGGCGGCGA TCA TCGACGCCGGCTCGG TTTCGCCTTTTTTCT TERM 2582 3704563 - 3704587 + g 80 -17.1 -2.67441 | opp_overlap 3704555 3704554, overlap 3704559 3704554 GATGAATCGCTCGGG GCCGGCGGCGA TCA TCGACGCCGGC TCGGTTTCGCCTTTT Rpal_3459 3705465 - 3704788 - | hypothetical protein Rpal_3460 3706137 - 3705508 - | CDP-alcohol phosphatidyltransferase TERM 2583 3706106 - 3706092 - G 73 -4.2 -4.58685 | overlap 3706081 3706080 AAATCCGCCGAAAAA CCTCGA CTT TCGACG GTTGAGCGGGCTGGT Rpal_3461 3706320 - 3707393 + | phosphoribosylformylglycinamidine cyclo-ligase TERM 2584 3707906 - 3707957 + G 89 -10.9 -4.21462 | gap 3, opp_overlap 3707892, overlap 3707948 3707953 ACGCCGGACACGCTG GCCGCGCGCGTGCTCGCGGTCGA-GC ATC GCATCTACCCCGAG-GCGC-TGCGGC TTTTGGCTGCTGGCT Rpal_3462 3707402 - 3708055 + | phosphoribosylglycinamide formyltransferase TERM 2585 3708142 - 3708158 + T 70 -7.9 -4.08216 | TCTTCAGGTTCTCCG CCGAGGT ACG ACCGCGG TTTTCAACCAGATCG Rpal_3463 3708322 - 3708119 - | cold-shock DNA-binding domain protein TERM 2586 3708380 - 3708351 - H 100 -13.6 -5.04597 | gap 1, overlap 3708352 ATCTAGATACAAAAA GGACGCGGCACGC TGCCC GCGTGCCACG-CC ACAAACGGCGAACCC TERM 2587 3708380 - 3708352 - H 91 -16 -3.61674 | overlap 3708351 TCTAGATACAAAAAG GACGCGGCACGC TGCCC GCGTGCCACGCC ACAAACGGCGAACCC Rpal_3464 3708814 - 3709587 + | putative transcriptional regulator, Crp/Fnr family TERM 2588 3709618 - 3709635 + T 100 -12.7 -5.55769 | opp_overlap 3709612 3709618 ACGTTCAAAGATGAA GCGAGCC ACCC GGCTCGC TTTTTTCTTGTCCGG TERM 2589 3709635 - 3709618 - T 76 -12.7 -3.45839 | opp_overlap 3709618, overlap 3709612 ACGTTCAAAGATGAA GCGAGCC ACCC GGCTCGC TTTTTTCTTGTCCGG Rpal_3465 3710493 - 3709672 - | hypothetical protein Rpal_3466 3710988 - 3710566 - | Nucleoside-diphosphate kinase TERM 2590 3712080 - 3712048 - g 100 -11.4 -4.36914 | overlap 3712079 CGGCGCCCGAGAAAA CGCTGTCG-CCGCCGA TCA TCG-CGGTCGACAACG TCGCGGTCGGCTACG TERM 2591 3712811 - 3712784 - g 81 -8.4 -4.56775 | gap 1, overlap 3712807 ATCGCGGCCGAAAAA GGCGGTTCCGCTG AAG CAGCAG-ATCGCC GATGCCGAAGCCGAG TERM 2592 3713004 - 3712984 - g 78 -14.7 -3.33815 | AGTGGTTGGAAGCAA GTGCGGCGC AGG ACGCCGCAC AAGGCTGAGAGTTAC Rpal_3467 3711135 - 3713012 + | ABC transporter related Rpal_3468 3713555 - 3713016 - | hypothetical protein Rpal_3469 3714138 - 3713686 - | DNA polymerase III chi subunit HolC Rpal_3470 3715651 - 3714149 - | Leucyl aminopeptidase TERM 2593 3715157 - 3715199 + g 70 -11.8 -3.45737 | overlap 3715168 CTTCTTGGCTGCCGC CGGATCGGCCACTGCGAGCG TGA CGCTGGCATTCGCCGCGCCG TTCTCGTCGTCCTTC TERM 2594 3716549 - 3716576 + G 76 -8.4 -4.25104 | gap 1, opp_overlap 3716525, overlap 3716548 3716544 ATCCGGGTCCGCGAA CGCCAGCCGGGCG GTC TGCT-GGTTGGCG TTTTCATCGACGACG TERM 2595 3716988 - 3717027 + G 72 -6.8 -4.1721 | overlap 3716983 GCAACTTCTCGATGG CCGGCGCGGTGCTGGTCG CCTT CGTCGTGCGACTCGCCGG TTTTGCGCTGTCGGT Rpal_3471 3716060 - 3717226 + | permease YjgP/YjgQ family protein TERM 2596 3718072 - 3718082 + G 79 -4.6 -4.72272 | overlap 3718044 AGTATCACAAGCTGC TGGC AAA GCCG TTTTTGCTGGCCGCG Rpal_3472 3717237 - 3718325 + | permease YjgP/YjgQ family protein TERM 2597 3718625 - 3718600 - g 83 -12.5 -4.05004 | opp_overlap 3718594 3718614, overlap 3718597 CGACTACAACAACAA GCGCGTCGCCG CGGT CGGCAACGTGC AGATGTATTACAACG TERM 2598 3718937 - 3718924 - g 73 -3.7 -4.63527 | overlap 3718925 GGACGATCCGAAAAA GCCGC CGCT GTGGC AGGTCAAGGGTGCGC Rpal_3473 3718325 - 3720838 + | Organic solvent tolerance protein Rpal_3474 3720917 - 3721843 + | SurA domain Rpal_3475 3721904 - 3722917 + | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 2599 3723709 - 3723719 + G 83 -8.2 -4.65916 | overlap 3723668 CGTGCCGAGACCGTG CCGG TGT CCGG TTTTGTTGCCATGGC Rpal_3476 3722914 - 3723777 + | dimethyladenosine transferase Rpal_3477 3723794 - 3724852 + | Alcohol dehydrogenase GroES domain protein TERM 2600 3724991 - 3724966 - f 100 -9.1 -5.00616 | gap 1 TTGTCGCGGAAAAAA CGGACGAACAGA AGT TCCGTT-GTCCG CGTCAGAATGGGGAA TERM 2601 3725205 - 3725184 - g 70 -10.2 -3.66018 | TGACCACGCCAACAA GCGCAAGT GCTGGT ACTTGCGC AAGGCGGACGCCGGG TERM 2602 3725541 - 3725517 - g 82 -17.1 -2.89564 | CGGCGAGGCGACACA GGCGGCGGCAG CGC CTGCCCCCGCC TCCGAGCAGTCGAAC Rpal_3478 3725011 - 3726189 + | hypothetical protein Rpal_3479 3726855 - 3726193 - | Guanylate kinase Rpal_3480 3727745 - 3726858 - | domain of unknown function DUF1732 Rpal_3481 3729104 - 3727848 - | aminodeoxychorismate lyase TERM 2603 3727952 - 3727993 + g 80 -14.4 -3.72695 | CGGCTGCCGCAGGAT CGCCCGCCGGCT-CTGCCGC CGGA GCGGCTGTGGTCGGCGG-CG TTTCCTCCGGCGGCT Rpal_3482 3730572 - 3729307 - | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 2604 3730649 - 3730611 - R 100 -16.8 -4.17048 | gap 1, opp_overlap 3730614, overlap 3730614 CGCGGTGCAAAACAA GAAGCCGG-TGGACCGC TTTTGT GCGGTCCGTCCGGCTTC CATCACACCGCGCGG TERM 2605 3730646 - 3730614 - R 89 -12.7 -4.20868 | gap 1, opp_overlap 3730614, overlap 3730611 GGTGCAAAACAAGAA GCCGG-TGGACCGC TTTTGT GCGGTCCGTCCGGC TTCCATCACACCGCG TERM 2606 3730614 - 3730646 + r 78 -14.9 -3.05384 | gap 1, opp_overlap 3730614 3730611 GGTGCAAAACAAGAA GCCGG-TGGACCGC TTTTGT GCGGTCCGTCCGGC TTCCATCACACCGCG Rpal_3483 3730908 - 3730669 - | acyl carrier protein Rpal_3484 3731950 - 3731213 - | 3-oxoacyl-(acyl-carrier-protein) reductase Rpal_3485 3732929 - 3731970 - | malonyl CoA-acyl carrier protein transacylase Rpal_3486 3733195 - 3734544 + | diguanylate cyclase Rpal_3487 3734716 - 3735192 + | ribosomal protein S6 TERM 2607 3735380 - 3735403 + G 77 -10.9 -3.7829 | opp_overlap 3735371 3735368 GAAGCAGCGCGAGCT CGCGCGCGC CATCAA GCGCGCCCG TTTCCTCGGTCTGCT Rpal_3488 3735198 - 3735437 + | ribosomal protein S18 TERM 2608 3735441 - 3735475 + F 100 -17.9 -4.05245 | gap 1, opp_overlap 3735443 3735446, overlap 3735444 3735446 GTGATCCGCTAATCG AAGTAGCCCCGCGGCG TCCG CGCCGCGGGGCT-CTC TTTACTTCTCTCATA TERM 2609 3735473 - 3735443 - f 95 -20.5 -3.17392 | gap 1, opp_overlap 3735441 3735444 3735446, overlap 3735446 GATCCGCTAATCGAA GTAGCCCCGCGGCG TCCG CGCCGCGGGGCT-C TCTTTACTTCTCTCA TERM 2610 3735444 - 3735473 + F 100 -20.7 -3.61097 | opp_overlap 3735443 3735446, overlap 3735441 3735446 ATCCGCTAATCGAAG TAGCCCCGCGGCG TCCG CGCCGCGGGGCTC TCTTTACTTCTCTCA TERM 2611 3735471 - 3735446 - f 100 -23.3 -2.78712 | opp_overlap 3735444 3735441 3735446, overlap 3735443 CCGCTAATCGAAGTA GCCCCGCGGCG TCCG CGCCGCGGGGC TCTCTTTACTTCTCT TERM 2612 3735446 - 3735471 + F 100 -23.3 -3.37257 | opp_overlap 3735446 3735443, overlap 3735444 3735441 CCGCTAATCGAAGTA GCCCCGCGGCG TCCG CGCCGCGGGGC TCTCTTTACTTCTCT Rpal_3489 3735565 - 3736515 + | hypothetical protein Rpal_3490 3736551 - 3737138 + | ribosomal protein L9 TERM 2613 3737166 - 3737191 + T 100 -20.5 -5.15634 | opp_overlap 3737166 GCAGCCATCGACGAA GCCCGGCCTGA GTGA TCAGGCCGGGC TTTTTTGCTGCCGTC TERM 2614 3737191 - 3737166 - T 95 -20.5 -3.18912 | opp_overlap 3737166 GCAGCCATCGACGAA GCCCGGCCTGA GTGA TCAGGCCGGGC TTTTTTGCTGCCGTC TERM 2615 3737277 - 3737257 - T 100 -19.7 -4.72272 | opp_overlap 3737257 TCGCCCCATGAAAAA GGGCCGCGC ATC GCGCGGCCC TTTCAATGTCAGCAG TERM 2616 3737257 - 3737277 + T 100 -19.7 -3.70902 | opp_overlap 3737257 TCGCCCCATGAAAAA GGGCCGCGC ATC GCGCGGCCC TTTCAATGTCAGCAG Rpal_3491 3738274 - 3737303 - | hypothetical protein TERM 2617 3738115 - 3738086 - G 71 -9.2 -3.85698 | gap 1 GTGCTGTCTCAGAAA CGCCCCG-ACCGC ATTCG GCGGCACGGTGCG GAGCAGACCGCGGGG TERM 2618 3738313 - 3738296 - H 93 -8.3 -5.08824 | opp_overlap 3738295, overlap 3738297 CTCCGATGCAAAAAA TCGCCGC AGCA GCGGCGG TGACCTTTTAGCGAA TERM 2619 3738312 - 3738297 - H 75 -11.8 -3.64812 | opp_overlap 3738295, overlap 3738296 TCCGATGCAAAAAAT CGCCGC AGCA GCGGCG GTGACCTTTTAGCGA Rpal_3492 3738533 - 3739783 + | Cyclopropane-fatty-acyl-phospholipid synthase Rpal_3493 3740002 - 3739805 - | hypothetical protein TERM 2620 3740471 - 3740431 - g 72 -11.8 -3.57561 | gap 1 TTCGAACGTTCTAAA GCTCGCTCCGGAA-CCCGG CGCG CCGGCCTTCCGGACCGCGC CGCACAACATCGAGG Rpal_3494 3740402 - 3741898 + | replicative DNA helicase TERM 2621 3742284 - 3742248 - g 72 -14.4 -3.06831 | gap 1, opp_overlap 3742251, overlap 3742251 GCAACGCTGAGCGAA GCA-CGCGTCGTGCGCG AAGC CGCGCCCAACGCGACGC TCTACGTGCTCGACG TERM 2622 3742280 - 3742251 - g 80 -17.1 -2.75183 | opp_overlap 3742251, overlap 3742248 ACGCTGAGCGAAGCA CGCGTCGTGCGCG AAGC CGCGCCCAACGCG ACGCTCTACGTGCTC Rpal_3495 3741966 - 3743207 + | alanine racemase TERM 2623 3743303 - 3743254 - T 90 -18.2 -3.09635 | gap 2, opp_overlap 3743266, overlap 3743258 3743262 3743266 ATTGCGAGGAGCGAA GCGACG--AAGCAATCCAGCACAG TGAA CTGCGCTGAATTGCTTCGCGTCGC TCGGAATGACGGATA TERM 2624 3743297 - 3743258 - T 100 -22.4 -2.55544 | opp_overlap 3743266, overlap 3743254 3743262 3743266 CGAGGAGCGAAGCGA CGAAGCAATCCAGCACAG TGAA CTGCGCTGAATTGCTTCG CGTCGCTCGGAATGA TERM 2625 3743293 - 3743262 - T 86 -16 -3.22388 | opp_overlap 3743266, overlap 3743258 3743254 3743266 GAGCGAAGCGACGAA GCAATCCAGCACAG TGAA CTGCGCTGAATTGC TTCGCGTCGCTCGGA Rpal_3496 3743591 - 3743334 - | putative exported protein of unknown function Rpal_3497 3745225 - 3743588 - | putative membrane protein of unknown function TERM 2626 3744363 - 3744311 - G 73 -9.5 -3.99324 | overlap 3744275 3744338 CGGCACGATCACAAA GCCCGCCGCCAGCACCAGCAGAGTC AAC GGCAACGCCGGCGCCAGCCGCGCGC CGCGGATCGCCAGCC Rpal_3498 3746076 - 3745684 - | hypothetical protein Rpal_3499 3746223 - 3747680 + | DNA repair protein RadA Rpal_3500 3747894 - 3748529 + | Colicin V production protein Rpal_3501 3748553 - 3750082 + | amidophosphoribosyltransferase Rpal_3502 3750212 - 3750955 + | short-chain dehydrogenase/reductase SDR TERM 2627 3751770 - 3751812 + G 72 -13.3 -3.14344 | opp_overlap 3751755 3751758, overlap 3751780 GCAGGCCGCCGAGTT CGGCATCACCGCGGGCGGC CAGAA GCTGGCCGCGCTGCTGCTG TTCATCAACGACGTG TERM 2628 3751780 - 3751807 + G 75 -15.6 -2.77523 | gap 1, opp_overlap 3751755 3751758, overlap 3751770 GAGTTCGGCATCACC GCGG-GCGGCCAG AAG CTGGCCGCGCTGC TGCTGTTCATCAACG Rpal_3503 3751039 - 3752265 + | putative ABC transporter, substrate binding protein TERM 2629 3752294 - 3752315 + T 100 -17.3 -3.83026 | CATCCGTTCAGCTTT CAGGCGCCG CTTG CGGCGCCTG TTTGCTGTCGGCGGC Rpal_3504 3753572 - 3752286 - | major facilitator superfamily MFS_1 Rpal_3505 3754948 - 3753569 - | small GTP-binding protein TERM 2630 3754992 - 3755017 + r 76 -8.3 -4.16842 | gap 1, overlap 3754992 CTGTCAATGTCGCAC GGG-TCAGACCT TCG AGGTCGGAGCCC TTTATTAGCGCTGGA Rpal_3506 3755573 - 3755022 - | putative exported protein of unknown function Rpal_3507 3756275 - 3755619 - | hypothetical protein TERM 2631 3756090 - 3756120 + g 77 -12.4 -3.66018 | opp_overlap 3756085 3756099 3756100 GGCGAGATCAGCGGC GGCGGCAAACGCCG CGC CGGCTTCAGCCGCC TTCTTGGCCTCGTAA TERM 2632 3756422 - 3756387 - R 81 -13.3 -3.75153 | gap 1 CGCTGGCAAGGCAAA GCGAGCCGGATCAAGG GGATA CCTCGA-CCGGCGCGC ACGCCTCCCGTGACC Rpal_3508 3757262 - 3756438 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase Rpal_3509 3757849 - 3757265 - | NnrUfamily protein TERM 2633 3757345 - 3757361 + g 72 -4.3 -4.56597 | opp_overlap 3757328 GCACCACGCCGGCGA CGATGGC GAT GACGTCG TTTTTAACGCCGCCG Rpal_3510 3757993 - 3758991 + | hypothetical protein TERM 2634 3759025 - 3758992 - T 80 -14.5 -3.16921 | gap 1 ATCAAGGTGCAGTAA GATCCGGCGGCGG-GC AAC GCACCGCCGCCGTCTC GCTGCCCGAAGGGGT Rpal_3511 3759486 - 3759040 - | hypothetical protein Rpal_3512 3759895 - 3759629 - | Sel1 domain protein repeat-containing protein Rpal_3513 3760707 - 3760570 - | hypothetical protein Rpal_3514 3762793 - 3761231 - | glutamyl-tRNA(Gln) amidotransferase, B subunit Rpal_3515 3764274 - 3762889 - | Patatin Rpal_3516 3765522 - 3764416 - | signal transduction histidine kinase Rpal_3517 3767077 - 3765599 - | glutamyl-tRNA(Gln) amidotransferase, A subunit TERM 2635 3767125 - 3767102 - H 71 -5.9 -4.3739 | overlap 3767103 CACGCCTGGATAAAA GCCGGCGAC AGGCCG GTCACGGGC GCCGCGGATCGTGCG Rpal_3519 3767490 - 3767774 + | hypothetical protein Rpal_3520 3767984 - 3767778 - | hypothetical protein Rpal_3521 3768283 - 3767996 - | glutamyl-tRNA(Gln) amidotransferase, C subunit Rpal_3522 3769446 - 3768370 - | 2-nitropropane dioxygenase NPD TERM 2636 3769130 - 3769105 - G 74 -14.7 -3.05596 | opp_overlap 3769110 CATCGCCGCATCGAA CGGCGCCCG GCTCGCCG CGGGCGCCG GCATCGCCGGGTCGA Rpal_3523 3769605 - 3770087 + | Holliday junction resolvase YqgF Rpal_3524 3770109 - 3770495 + | SEC-C motif domain protein Rpal_3525 3772271 - 3770622 - | acyl-CoA dehydrogenase domain protein TERM 2637 3772340 - 3772321 - R 76 -7 -4.42653 | opp_overlap 3772326, overlap 3772322 3772335 ATGTTACGCAGAAAA CCGCCGCG ATGA CATGGCGG ATCGCCACGCCCTCA Rpal_3526 3773984 - 3772353 - | indolepyruvate/phenylpyruvate decarboxylase TERM 2638 3772507 - 3772452 - G 73 -12.6 -3.37796 | gap 4, overlap 3772455 TTCGATCAGTGAGAA CACCCCGCGCCG--CTCGACCGC-GCGC TGCA GCGCCGCGG-CGAGTTCGGCGCGCGTCG TCACCCGCTCGCCGA TERM 2639 3772504 - 3772455 - G 71 -15.1 -2.55216 | gap 4, overlap 3772452 GATCAGTGAGAACAC CCCGCGCCG--CTCGACCGC-GCGC TGCA GCGCCGCGG-CGAGTTCGGCGCGCG TCGTCACCCGCTCGC TERM 2640 3773709 - 3773658 - G 74 -14.5 -2.95476 | gap 3 ATGATGCAGCAGATA GCCGCTGGT-GCGCTCG-C-GCGCGC CCG GCGCGCCGGCGATCACCACCACCGGC GAGCGCTCCGCATAG TERM 2641 3774330 - 3774315 - g 82 -6.1 -4.84359 | overlap 3774316 GCAGGTCGACAAAAA GCGCA CCAGTT TGCGC GGCCGCACCCAGGTC Rpal_3527 3774175 - 3775128 + | aspartate carbamoyltransferase Rpal_3528 3775148 - 3776458 + | dihydroorotase, multifunctional complex type Rpal_3529 3776602 - 3777213 + | protein of unknown function DUF205 Rpal_3530 3777392 - 3778171 + | hypothetical protein Rpal_3531 3778243 - 3779379 + | DNA protecting protein DprA TERM 2642 3779472 - 3779488 + G 85 -6.5 -4.84761 | GAATCACCTGCCAAT GCTGTTC TAC GAACCGC TTTTTCTGACAGTCT TERM 2643 3780019 - 3780054 + G 73 -12.4 -3.35996 | opp_overlap 3779985 3779983 3779982 3779980 GCCGCGCCGCCATCG CCGCGCTGGCGCGACG CACG CGACGGGCTGGTGCGG TTCTGCATGGGGCTG Rpal_3532 3779470 - 3780882 + | membrane bound O-acyl transferase MBOAT family protein TERM 2644 3781523 - 3781549 + G 86 -16.6 -3.53811 | GCGCTGGTCTATGCG CAGCGGCATGTC CAG GCCATGCCGCTG TTTCCCCGCGATGGC Rpal_3533 3780887 - 3782077 + | hypothetical protein TERM 2645 3782138 - 3782102 - T 100 -15.2 -5.00616 | opp_overlap 3782107 3782108, overlap 3782104 GCCGGCTCCAAAAAA GCCAACGGCCCGAAGC GGTGA GCTTCGAGCCATTGTC CAGGAGCGGACGTAC TERM 2646 3782136 - 3782104 - T 81 -16.4 -2.75708 | opp_overlap 3782107 3782108, overlap 3782102 CGGCTCCAAAAAAGC CAACGGCCCGAAGC GGTGA GCTTCGAGCCATTG TCCAGGAGCGGACGT Rpal_3534 3782554 - 3782339 - | hypothetical protein TERM 2647 3782744 - 3782770 + H 100 -10.9 -5.13344 | gap 2 TGTTCCGGGCAATCT GGCCGG-C-GCGA GTC TCGCAGACCGGCC TTTTTCTCTTCATCT TERM 2648 3783538 - 3783505 - g 75 -4.5 -4.66953 | gap 1 GGAAGACTTCAAAAA GGCGATCGAAGCGG CGAACTT CCGCGTCG-CCACC GTCGAAGCCAAGCCG TERM 2649 3785168 - 3785203 + G 71 -13.9 -2.87132 | opp_overlap 3785188 GATCACCCGACGCTC GGCGCGGTCGCGGTC AAGAAG GGCCGCTACGGCGCC TATGTCACCGCCGGC TERM 2650 3785496 - 3785485 - g 70 -3.6 -4.57073 | overlap 3785473 GACCGCGGCGAAAAA GGCC GCCA AGCC TAAAGACGCGGCCAA Rpal_3535 3782801 - 3785536 + | DNA topoisomerase I TERM 2651 3786237 - 3786219 - g 74 -7.4 -4.18018 | overlap 3786220 GCTCGCCAGCGAAAA GGCGATCA GCC TGATCGCG ATCCACACCCACGAC TERM 2652 3786450 - 3786427 - g 70 -3.7 -4.45738 | overlap 3786428 GATCCGAACAACAAA GGCGGCGTG ATCCTG CACGTCGCG ATCGCCGACGTCGCC Rpal_3536 3785539 - 3787884 + | ribonuclease R Rpal_3537 3787884 - 3788312 + | protein of unknown function DUF983 Rpal_3538 3788382 - 3789137 + | NUDIX hydrolase TERM 2653 3789205 - 3789165 - T 93 -16.2 -3.72324 | opp_overlap 3789176, overlap 3789166 CATTTGCACGAACAA GCTCGAACTAACGGCGGG ACCAA CGCGCCGTCAGTTCGAGT AGCAAGGCGATTGCC TERM 2654 3789204 - 3789166 - T 93 -19.7 -2.83073 | opp_overlap 3789176, overlap 3789165 ATTTGCACGAACAAG CTCGAACTAACGGCGGG ACCAA CGCGCCGTCAGTTCGAG TAGCAAGGCGATTGC Rpal_3539 3790419 - 3789172 - | major facilitator superfamily MFS_1 TERM 2655 3789896 - 3789880 - G 75 -9.3 -4.15222 | overlap 3789849 ATGGCCGGCAACAAA GCCGGCC ACC GTCCGGC TGAGCAGGATGCCGC TERM 2656 3790327 - 3790380 + g 72 -11.5 -3.61398 | gap 1, overlap 3790328 GGCGCCCATTGCGGG CCCCGGCACCGAGGCGCCGCCCGGGC CGG GCTTCGGCGGCGGTTCGG-GTCGAGA TTCTTCCGCGACGCG TERM 2657 3790328 - 3790379 + g 72 -15 -2.76696 | gap 1, overlap 3790327 GCGCCCATTGCGGGC CCCGGCACCGAGGCGCCGCCCGGGC CGG GCTTCGGCGGCGGTTCGG-GTCGAG ATTCTTCCGCGACGC Rpal_3540 3790718 - 3790885 + | ribosomal protein L33 TERM 2658 3790919 - 3790936 + T 100 -14.1 -4.45168 | ACGGCATTCCTTCCG CGGGGCC TTCG GGCCCCG TTTCTATTTTGGGCA TERM 2659 3791011 - 3790982 - T 100 -23.7 -2.87132 | CGCTTCGCCCACAGA TGGCATCGCCCGC GCAG GCGGGCGATGCCA TATCCCAGAGCCTCC Rpal_3541 3792494 - 3791121 - | response regulator receiver modulated diguanylate cyclase TERM 2660 3791759 - 3791775 + g 71 -9.3 -3.79906 | CACCGATCTCAAGCC CGCGCAG CAG CCGCGCG TTGTTCTCGGCCTCC Rpal_3542 3792870 - 3792505 - | response regulator receiver protein TERM 2661 3792946 - 3792897 - H 89 -11.4 -4.26076 | gap 2, opp_overlap 3792897 3792898 CTACTCGCACTAAAA TGCCCG-GGCCGGCGGCCCG-CGA TCGT TCGACAAGCCGCAAGACTCGGGCA TGATTGAATAAAATA Rpal_3543 3792996 - 3793295 + | hypothetical protein Rpal_3544 3793292 - 3794587 + | DNA-directed DNA polymerase Rpal_3545 3795578 - 3794712 - | Domain of unknown function DUF1849 Rpal_3546 3795849 - 3796316 + | Endoribonuclease L-PSP Rpal_3547 3796336 - 3797082 + | glycerophosphoryl diester phosphodiesterase Rpal_3548 3797175 - 3798404 + | protein of unknown function DUF482 Rpal_3549 3798454 - 3798882 + | histidine triad (HIT) protein Rpal_3550 3799349 - 3798888 - | protein of unknown function UPF0066 TERM 2662 3798988 - 3798955 - G 72 -13.9 -3.05384 | gap 1 GTGCCGTCGAGGCAA TCGAGGCCGCGCACCA ACA CGGT-CGCGCCCTCGA TCCCGACCACCGCCA Rpal_3551 3799742 - 3799398 - | putative membrane protein of unknown function Rpal_3552 3800482 - 3799739 - | AzlC family protein TERM 2663 3800451 - 3800432 - G 80 -9.2 -4.26871 | overlap 3800436 CAAGCCACGAAGAAA GGCACGGC CGGG GCTGTGCC ACTGCGGCGAAGTCG Rpal_3553 3800635 - 3800994 + | type IV pilus assembly PilZ Rpal_3554 3802042 - 3801011 - | Lytic transglycosylase catalytic TERM 2664 3801231 - 3801289 + g 70 -10.2 -3.63515 | opp_overlap 3801239 GCCAGCGCCCGGTTG CGATTGAAGC-CGGCGGCGAGCTGCACG CCCCA CG-GCCGATCGGCGCCGAGCTTCACGCG TTGTTCGAGCTCGGC TERM 2665 3804483 - 3804454 - g 79 -8.4 -4.42386 | overlap 3804455 GGCCGAGCCAGAAAA GCCGGAAGCGCC CGTCCC GGCGCCACCGGA CGAGCAACCGTCGCC Rpal_3555 3802754 - 3804532 + | hypothetical protein TERM 2666 3804586 - 3804552 - T 74 -9.3 -3.88787 | gap 1, opp_overlap 3804552 3804556, overlap 3804555 TGATAGCTCGACAAA CG-ACGAGGCCGGCAA TCGC TCGCCGGCCTCTTTCA TTTTGATCGCTGAAG TERM 2667 3804582 - 3804555 - T 75 -13.4 -3.01422 | opp_overlap 3804552 3804556, overlap 3804552 TAGCTCGACAAACGA CGAGGCCGGCAA TCGC TCGCCGGCCTCT TTCATTTTGATCGCT TERM 2668 3804556 - 3804581 + T 100 -14.7 -4.23781 | opp_overlap 3804555 3804552, overlap 3804552 AGCTCGACAAACGAC GAGGCCGGCAA TCGC TCGCCGGCCTC TTTCATTTTGATCGC Rpal_3556 3806991 - 3804607 - | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 2669 3804735 - 3804754 + g 72 -15 -2.70932 | CGATCTTCTCCAGCT CGACGCCG GCGA CGGCGTCG TCCTTGACCAGCACG Rpal_3557 3807532 - 3807185 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2670 3807767 - 3807807 + H 76 -14 -3.15579 | gap 2, opp_overlap 3807750 CGGAGGCGCGCCCTA GCCT-C-GCCGCAGGCGGAG GAC CGCCGCCTGCGGCTGCAGGG TTAATCGGGCGTTAG Rpal_3558 3807987 - 3809354 + | hypothetical protein Rpal_3559 3809710 - 3811467 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 2671 3811495 - 3811517 + T 100 -22 -4.87291 | opp_overlap 3811495 CTCGAACGAGACCAA CGCGGCCGGG CTC CCCGGCCGCG TTTTTCGTTGGCCTC TERM 2672 3811517 - 3811495 - T 100 -22 -3.32647 | opp_overlap 3811495 CTCGAACGAGACCAA CGCGGCCGGG CTC CCCGGCCGCG TTTTTCGTTGGCCTC TERM 2673 3811708 - 3811698 - T 71 -5.4 -4.431 | GATTGATCGATAAAA GTTG AAT CAAC AGCCACGCCGAAGCG Rpal_3560 3812523 - 3811795 - | heat shock protein DnaJ domain protein TERM 2674 3812506 - 3812493 - G 83 -9.5 -4.33274 | TGTAGAGCACGAAAA CGGCG ATGG CGCCG GCAATCAACGTAGGC TERM 2675 3812567 - 3812555 - R 78 -6.9 -4.65895 | overlap 3812556 3812558 3812559 GGTCGCACCGAAAAA GCACC GGC GGCGC CTCGCTGGCGGCTAC TERM 2676 3812615 - 3812559 - R 74 -14.2 -2.55361 | gap 1, overlap 3812555 3812556 3812558 GCACCGAAAAAGCAC CGGCGGCGCCTCGCTGGCGGCTACCGC ATCT GCCCGAGCAG-CAGCGCCGCGCCGCCG CCGCTGGCGGCCAGC Rpal_3561 3813319 - 3812579 - | hypothetical protein Rpal_3562 3814225 - 3813398 - | hypothetical protein Rpal_3563 3815423 - 3814500 - | ATPase MipZ Rpal_3564 3815691 - 3816542 + | pantoate/beta-alanine ligase Rpal_3565 3816998 - 3816579 - | hypothetical protein Rpal_3566 3818077 - 3817037 - | hypothetical protein Rpal_3567 3818448 - 3818257 - | hypothetical protein Rpal_3568 3819317 - 3818661 - | Glutathione S-transferase domain Rpal_3569 3819435 - 3819719 + | hypothetical protein Rpal_3570 3820520 - 3819726 - | protein of unknown function DUF218 Rpal_3571 3821428 - 3820595 - | aldo/keto reductase Rpal_3572 3821848 - 3821483 - | transcriptional regulator, XRE family Rpal_3573 3823314 - 3821893 - | magnesium transporter Rpal_3574 3823477 - 3824280 + | polysaccharide deacetylase TERM 2677 3824897 - 3824921 + G 79 -13.5 -3.7347 | CCTCGCCGCCCTCGA CGGTGACCGCG CCG CGCTGTCGCCG TTCTTCCGTATTCCC Rpal_3575 3824418 - 3825737 + | polysaccharide deacetylase Rpal_3576 3825823 - 3826254 + | hypothetical protein Rpal_3577 3826254 - 3826715 + | RES domain protein TERM 2678 3826993 - 3826964 - T 72 -2.7 -4.67982 | overlap 3826967 3826982 3826991 GCCCATTTAACAAAA CAATGATGAGGCC ACAA GGCCAGATCAGCG TCGATCTGGGGATCG TERM 2679 3826990 - 3826967 - T 71 -5.2 -4.44914 | overlap 3826964 3826982 CATTTAACAAAACAA TGATGAGGCC ACAA GGCCAGATCA GCGTCGATCTGGGGA Rpal_3578 3827230 - 3826988 - | surface presentation of antigens (SPOA) protein Rpal_3579 3827297 - 3828034 + | lipoate-protein ligase B Rpal_3580 3828305 - 3830926 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Rpal_3581 3831382 - 3830951 - | 4-oxalocrotonate tautomerase TERM 2680 3831670 - 3831685 + G 77 -10.4 -3.91897 | ATCGGTCGGACTGAC CGCCGA AGGC TCGGCG TTTCTGGATCGGGCC Rpal_3582 3831488 - 3832336 + | transcriptional regulator, LysR family TERM 2681 3832334 - 3832357 + T 71 -13.2 -3.05463 | gap 1 AGGCAGATCGCAGGC TGAG-CCGGCG TCG CGCCGGTCTCA TTGCGTCGACAGGAT Rpal_3583 3832654 - 3832355 - | acylphosphatase Rpal_3584 3833520 - 3832654 - | putative carboxy-phosphonoenolpyruvate mutase TERM 2682 3833019 - 3832974 - G 70 -12 -3.38812 | gap 3, opp_overlap 3832983, overlap 3832972 3832975 CGCCGGTGAAGAACA GCGCATCGA-CGCCCGC-GGCCT GAT AGGCCAACGCGCGTTCGAT-CGC GTCGTCGAGCGACGT Rpal_3585 3835542 - 3833527 - | Carbamoyl-phosphate synthase L chain ATP-binding Rpal_3586 3835696 - 3837546 + | type I phosphodiesterase/nucleotide pyrophosphatase TERM 2683 3837555 - 3837532 - T 100 -16.7 -5.34309 | ACCACCAAACAAAAA GCGGCGGGG AAATAA CCCCGCCGC CCGAATTGAAGACGT Rpal_3587 3838158 - 3837583 - | hypothetical protein TERM 2684 3837824 - 3837846 + g 74 -12.6 -3.53224 | GGCAGGCCCGAGGCG GCCGCGGCGT GAT GCGCCACGGC TTTGGCGAACAGATC TERM 2685 3838038 - 3838019 - G 71 -3.4 -4.57837 | overlap 3838020 3838021 3838023 AGAGTTCGGGAAAAA TGCACCCG ACCG CGGGTGGT CGGGCCTTCGCCGGT TERM 2686 3838378 - 3838402 + r 75 -15 -2.7185 | gap 1, opp_overlap 3838370 3838369, overlap 3838375 GGCAAAGCGGCTTTG CCGG-GCGGCC ATTT GGCCGCACCGG TCATTCAGCAGTCCT Rpal_3588 3838850 - 3838452 - | hypothetical protein TERM 2687 3840151 - 3840173 + G 70 -11.2 -3.6106 | overlap 3840153 CAGTGGGTGGCGGGC TGCGGCGCCG ATG CGGCACCGTA TTTCCGCGTGTTCAA TERM 2688 3840153 - 3840171 + G 70 -11.6 -3.38201 | overlap 3840151 GTGGGTGGCGGGCTG CGGCGCCG ATG CGGCACCG TATTTCCGCGTGTTC Rpal_3589 3838969 - 3840420 + | Deoxyribodipyrimidine photo-lyase TERM 2689 3840768 - 3840750 - g 86 -9.5 -4.70626 | overlap 3840741 CAAGAAGGCCAAAAA GGCCGCC AAGAA GGCAGCC AAGAAAACCGTGAAG Rpal_3590 3840499 - 3840840 + | putative histon H1 TERM 2690 3840892 - 3840868 - T 93 -17.1 -3.53224 | opp_overlap 3840868 GATCGGCCGGCGAAA GCCTCCGGAGC ACG GCTCCGGGGGC TTTTTGCTGTCCGCT TERM 2691 3840868 - 3840892 + T 100 -19.3 -4.80882 | opp_overlap 3840868 GATCGGCCGGCGAAA GCCTCCGGAGC ACG GCTCCGGGGGC TTTTTGCTGTCCGCT Rpal_3591 3841822 - 3840947 - | protein of unknown function DUF6 transmembrane Rpal_3592 3841976 - 3842884 + | phenazine biosynthesis protein PhzF family Rpal_3593 3843385 - 3842939 - | hypothetical protein Rpal_3594 3845320 - 3844529 - | hypothetical protein Rpal_3595 3845785 - 3845324 - | hypothetical protein TERM 2692 3847067 - 3847099 + r 85 -15 -3.64703 | gap 1, opp_overlap 3847067 3847065, overlap 3847076 AGAGGGCCCACAACA CCG-GAGCAACCAGC CCGC GCTGGTTGTTCTCGG TTTCGGTGAGAGAGC TERM 2693 3847099 - 3847067 - R 73 -12.8 -3.22102 | gap 1, opp_overlap 3847067 3847076, overlap 3847065 AGAGGGCCCACAACA CCG-GAGCAACCAGC CCGC GCTGGTTGTTCTCGG TTTCGGTGAGAGAGC TERM 2694 3847076 - 3847089 + r 71 -8.1 -3.86995 | opp_overlap 3847067 3847065, overlap 3847067 ACAACACCGGAGCAA CCAGC CCGC GCTGG TTGTTCTCGGTTTCG Rpal_3596 3848309 - 3848049 - | hypothetical protein Rpal_3597 3848758 - 3848522 - | hypothetical protein Rpal_3598 3849672 - 3851690 + | methyl-accepting chemotaxis sensory transducer TERM 2695 3851697 - 3851721 + F 91 -18.6 -3.08996 | GCCGCCTGATCATCG CCCCGGCTCG CCCCC CGAGCCGGGG TCTTCCCTCGCAATC Rpal_3599 3851855 - 3852205 + | hypothetical protein Rpal_3600 3854939 - 3852237 - | multi-sensor signal transduction histidine kinase TERM 2696 3855115 - 3855080 - R 71 -9.5 -3.72893 | opp_overlap 3855102 3855106 3855108, overlap 3855084 3855085 CAGCTTGTGATGAAA GCAAGCGCCGCCCGG GATGAG CCGGGCGGCGGCAGG TCGTCGGCCGCTATT TERM 2697 3855111 - 3855084 - R 86 -15.5 -3.56704 | opp_overlap 3855102 3855106 3855108, overlap 3855080 3855085 TTGTGATGAAAGCAA GCGCCGCCCGG GATGAG CCGGGCGGCGG CAGGTCGTCGGCCGC TERM 2698 3855110 - 3855085 - R 87 -19 -2.73701 | opp_overlap 3855102 3855106 3855108, overlap 3855084 3855080 TGTGATGAAAGCAAG CGCCGCCCGG GATGAG CCGGGCGGCG GCAGGTCGTCGGCCG Rpal_3601 3857300 - 3855126 - | PQQ-dependent dehydrogenase, methanol/ethanol family Rpal_3602 3858245 - 3857454 - | NUDIX hydrolase Rpal_3603 3859203 - 3858250 - | dihydrodipicolinate synthetase Rpal_3604 3860184 - 3859306 - | short-chain dehydrogenase/reductase SDR TERM 2699 3859585 - 3859627 + g 74 -10.4 -3.81488 | overlap 3859609 CGGCAAGTCTTCGGT CATCCGGGTCAGCGCACCGG GCG CCAGCGTCCAGATCCGGATG TTGTATTTGCGGCCC Rpal_3605 3861190 - 3860330 - | 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase TERM 2700 3861413 - 3861395 - R 81 -13.8 -3.63515 | opp_overlap 3861394 3861395, overlap 3861380 GGCCACCGTGAAGAA CGGCAGCG GCG CGCCGCCG TCGGTTGGCTTGAAC Rpal_3606 3861769 - 3861377 - | protein of unknown function DUF35 Rpal_3607 3862917 - 3861769 - | acetyl-CoA acetyltransferase TERM 2701 3862927 - 3862948 + r 74 -2.2 -4.83615 | gap 1, overlap 3862925 TGTCAACGCAGTTCT CCG-CTGGC GTTTG GTCGGGCGG TTTTTGTGACCGCTC TERM 2702 3863087 - 3863122 + r 89 -17 -3.14211 | gap 1, opp_overlap 3863087 3863091, overlap 3863091 3863097 3863120 TGCGAGCGAAGTGAA GCAATCCAGG-GCCCGG TCA CTGGGCTTCTGGATTGC TTCGTCACGGAGCCT TERM 2703 3863122 - 3863087 - R 73 -12.6 -3.19192 | gap 1, opp_overlap 3863087 3863091 3863097 3863120, overlap 3863091 TGCGAGCGAAGTGAA GCAATCCAG-GGCCCGG TCA CTGGGCTTCTGGATTGC TTCGTCACGGAGCCT Rpal_3608 3866691 - 3863206 - | pyruvate ferredoxin/flavodoxin oxidoreductase TERM 2704 3863924 - 3863975 + g 71 -12.1 -3.26531 | gap 1, overlap 3863922 3863925 CCGTGCAGCAGCGAG GCCAGCCGCGCCGGATCGG-CGGC GGCGA GCCGGCCGAGCCGGAACGCCTGGG TGTTCATCTTGATCG TERM 2705 3863925 - 3863974 + g 74 -15.6 -2.55437 | gap 1, overlap 3863924 3863922 CGTGCAGCAGCGAGG CCAGCCGCGCCGGATCGG-CGGC GGCGA GCCGGCCGAGCCGGAACGCCTGG GTGTTCATCTTGATC TERM 2706 3866758 - 3866771 + H 72 -4.5 -4.59773 | GGTCTCTGTTTCGAA CCAGT CTAA GCTGG TTTTTCCGCCTCGCG TERM 2707 3866820 - 3866798 - H 75 -3.3 -4.91109 | gap 1, opp_overlap 3866801 3866808 CGCGCACCACAAAAA GCCGGCGCGC GCGA GCA-GCCCGC CTATTCGCATTTTGA Rpal_3609 3867022 - 3867423 + | hypothetical protein TERM 2708 3867455 - 3867492 + F 70 -12.7 -2.87211 | opp_overlap 3867459 CAGTTGCAGACCTTA CAGATGCGGTGAACGGC GCAA GTCGTTCGCCGCATCAC TGTGTCGGGCAGCGT Rpal_3610 3867668 - 3867955 + | hypothetical protein TERM 2709 3867980 - 3867997 + T 100 -14.1 -5.64274 | opp_overlap 3867980 CGCGATCGATGAAAA GCCCCGC TCGC GCGGGGC TTTTTTTGTACGTCG TERM 2710 3867997 - 3867980 - T 100 -14.1 -4.2828 | opp_overlap 3867980 CGCGATCGATGAAAA GCCCCGC TCGC GCGGGGC TTTTTTTGTACGTCG Rpal_3611 3868830 - 3868021 - | protein of unknown function DUF1295 Rpal_3612 3869484 - 3868936 - | hypothetical protein Rpal_3613 3871306 - 3869573 - | serine/threonine protein kinase TERM 2711 3869753 - 3869806 + g 70 -10.2 -3.70068 | overlap 3869753 CGCCGGATAGCGCTT G-GCCGGGTCGAGGCTGACCGCGCGT TGCA GCGCGGGGTCAACCCAGACC-GGCAC TTTCGCATTGTGGTC TERM 2712 3870946 - 3870933 - G 70 -3.7 -4.44046 | opp_overlap 3870933 3870934, overlap 3870929 CCGATGTGAAACAAA TGCGC TGCC GCGCC TTTGATCACCAGCGC TERM 2713 3871362 - 3871328 - R 100 -17.9 -4.44667 | overlap 3871329 TGCTGCAACAAGAAA GCGGGAGCTTCACCC TGGGC GGGCGAAGCTCCCGA ATGCCATCAGCTTAC TERM 2714 3871361 - 3871329 - R 100 -21.4 -3.26318 | overlap 3871328 GCTGCAACAAGAAAG CGGGAGCTTCACCC TGGGC GGGCGAAGCTCCCG AATGCCATCAGCTTA Rpal_3614 3872213 - 3871374 - | formate/nitrite transporter TERM 2715 3872649 - 3872682 + G 81 -12.3 -3.77196 | opp_overlap 3872660, overlap 3872650 CTCGGGCGATTTTGC ACGACCGGAAAGCCC CCAA GGGCCTTCCGGCCGA TTTGCTCGGTACTGC TERM 2716 3872650 - 3872681 + G 76 -15.8 -2.85996 | opp_overlap 3872660, overlap 3872649 TCGGGCGATTTTGCA CGACCGGAAAGCCC CCAA GGGCCTTCCGGCCG ATTTGCTCGGTACTG Rpal_3615 3872606 - 3872890 + | plasmid maintenance system killer Rpal_3616 3872903 - 3873205 + | plasmid maintenance system antidote protein, XRE family Rpal_3617 3874245 - 3873388 - | NAD-dependent epimerase/dehydratase TERM 2717 3873836 - 3873870 + g 73 -3.5 -4.62471 | gap 1, overlap 3873838 TCTAACGCCAGCCAG CGCTGCTCGGCGGC GATCCGGA GCTGC-GAGCGGGG TTTTTCCGACTTCGC TERM 2718 3874422 - 3874382 - R 100 -16.2 -4.62069 | opp_overlap 3874388, overlap 3874384 3874385 GCGTCAGCTCAAAAA CACGAAGGGCGGTGATCG TGTCG CGATCACCGCCCTTCTCC AACTCGAACGAGCCG TERM 2719 3874420 - 3874384 - R 100 -21 -3.92746 | opp_overlap 3874388, overlap 3874382 3874385 GTCAGCTCAAAAACA CGAAGGGCGGTGATCG TGTCG CGATCACCGCCCTTCT CCAACTCGAACGAGC TERM 2720 3874419 - 3874385 - R 100 -24.5 -2.95166 | opp_overlap 3874388, overlap 3874384 3874382 TCAGCTCAAAAACAC GAAGGGCGGTGATCG TGTCG CGATCACCGCCCTTC TCCAACTCGAACGAG TERM 2721 3874388 - 3874416 + r 95 -21.1 -3.31144 | opp_overlap 3874385 3874384 3874382 GCTCAAAAACACGAA GGGCGGTGATCGT GTC GCGATCACCGCCC TTCTCCAACTCGAAC Rpal_3618 3875976 - 3874444 - | carboxyl transferase Rpal_3619 3876256 - 3876672 + | hypothetical protein Rpal_3620 3876949 - 3876674 - | type III secretion protein Rpal_3621 3878748 - 3876946 - | putative exported protein of unknown function TERM 2722 3878326 - 3878347 + g 74 -15.1 -3.03124 | opp_overlap 3878284 CACCGCCGTTGCCGC GGCGGTCGC CACC GCGGCCGCC TGTTGCGGCGTCAGC Rpal_3622 3879603 - 3878818 - | ATP12 ATPase TERM 2723 3879410 - 3879439 + g 72 -13.5 -3.14564 | gap 1 GCGAGCGTCCGATCC GGCGCCGCCAGCGC GTG GCGC-GACGGCGTC TTGATCGGGCGATCG Rpal_3623 3879947 - 3879618 - | hypothetical protein TERM 2724 3879986 - 3880014 + r 74 -13.8 -2.93073 | gap 1, opp_overlap 3879932, overlap 3879983 TGATGTCGGCATCGC CGCGCGCCGCCGC AAGC GGGGCGGC-CGCG TCATTCTTCCGGCGC Rpal_3624 3881382 - 3880015 - | pseudouridine synthase, RluA family TERM 2725 3881503 - 3881489 - R 74 -9.2 -3.83323 | CGCAGAGAAGCCAAA GCCCCG GAC CGAGGC ACAGCGCCTGACGCT Rpal_3625 3882195 - 3881614 - | hypothetical protein Rpal_3626 3883590 - 3882685 - | dienelactone hydrolase TERM 2726 3884184 - 3884173 - g 72 -7.2 -4.2349 | TCTCGACAGCGAAAA GCCG AACG CGGC CAAGATCGCCGAGGT TERM 2727 3885065 - 3885037 - g 78 -14.5 -3.25823 | CTGCCTCGAGATCAA CGCCACCGTCGGC GTC GCCGACGACGCCG TCACCCACCTACAGC TERM 2728 3885296 - 3885253 - g 77 -13.8 -3.39327 | gap 1 GGGCCAGATCGACAA GGGCGTCGCTGCCGCCGAACA GCT CGTGCAGCGGCAG-ATCGCCC GCGTCGGCGAGACGC TERM 2729 3886887 - 3886866 - g 72 -13.7 -3.01712 | gap 1, opp_overlap 3886870 3886881 3886885 TGTCGGCCTGCAACA CCGGCG-CGG GTG CCGGCGCCGG TGCCGAGGCCGCCTC TERM 2730 3886870 - 3886918 + G 100 -12.2 -4.30995 | gap 1, opp_overlap 3886866, overlap 3886881 3886885 GGCCTGCAACACCGG CGCGGGTGCCGGCGCCGGTGCCG AGGC CGCCTCCGGTCTCGGC-CGCGCG TTCTTTTATGCCGGC TERM 2731 3886881 - 3886921 + G 77 -7.4 -4.36914 | gap 1, opp_overlap 3886866, overlap 3886870 3886885 CCGGCGCGGGTGCCG GCGC-CGGTGCCGAGGCCG CCTC CGGTCTCGGCCGCGCGTTC TTTTATGCCGGCACG Rpal_3627 3883772 - 3887179 + | Tetratricopeptide TPR_2 repeat protein Rpal_3628 3887207 - 3887653 + | hypothetical protein Rpal_3629 3887663 - 3887869 + | hypothetical protein Rpal_3630 3887869 - 3888636 + | hypothetical protein Rpal_3631 3888774 - 3889451 + | nitroreductase TERM 2732 3889499 - 3889467 - f 71 -12.6 -3.07113 | opp_overlap 3889463, overlap 3889469 CACGACCTGATGCAA CATCGCTCCGCGGC CCTGC GCCGCGGAGTGCCG CGCGTGTCAAGCTGC Rpal_3632 3889656 - 3891716 + | PAS/PAC sensor hybrid histidine kinase TERM 2733 3891806 - 3891758 - T 84 -16.1 -3.07816 | overlap 3891764 CCCGGATGCAGCGAA GCGAAATCCGGGGACCGAACT GGTGAGA AGTCCGATCCCCGCATATCGC TGCGCTCATGCGAGC TERM 2734 3891800 - 3891764 - T 76 -10.9 -3.76952 | overlap 3891758 TGCAGCGAAGCGAAA TCCGGGGACCGAACT GGTGAGA AGTCCGATCCCCGCA TATCGCTGCGCTCAT Rpal_3633 3893053 - 3891845 - | Extracellular ligand-binding receptor TERM 2735 3893078 - 3893093 + r 91 -4.7 -5.26119 | CCCTGTTGTTTTGTT GCGAT GCGGTG ATCGC TTTTGTTTTTCAGGG Rpal_3634 3893578 - 3893159 - | protein of unknown function UPF0047 Rpal_3635 3895618 - 3893648 - | diguanylate cyclase/phosphodiesterase TERM 2736 3894662 - 3894619 - G 72 -13.8 -3.01712 | gap 1, overlap 3894598 GCGGCTGGCCCAAGA CCTGCAGCGGCCGCGTCAGCG CGC CGCTGA-GCCGCCGCGCCAGA GACAGCGCGCGCGCC TERM 2737 3894758 - 3894710 - G 73 -13.3 -3.23692 | gap 2 CAGCACCACGATGAA CTCGTCGCCGCCGAGCCGCAC CGGCAGATC GTGCGGCCCG-C-ACGACGAG CGCAGCAGATCGGCG Rpal_3636 3897250 - 3895919 - | AAA ATPase central domain protein Rpal_3637 3898867 - 3897476 - | protease Do Rpal_3638 3899339 - 3898950 - | transcriptional regulator, HxlR family TERM 2738 3899506 - 3899482 - g 72 -14.3 -3.05844 | opp_overlap 3899475, overlap 3899463 TCGGCTACTCCAAGA GCCTCCCGATC GAC GATCCGGAGGC ACTGCTCGATCTTGA Rpal_3639 3899457 - 3900473 + | zinc-binding alcohol dehydrogenase family protein TERM 2739 3900530 - 3900563 + T 81 -16.1 -2.82015 | gap 1 CTCTCTCCCGAGTCA TTCCGGG-GCGCGAAC GAA GTTCGCGAACCCGGAA TCTCCTGCGTGTCGC Rpal_3640 3901490 - 3900696 - | short-chain dehydrogenase/reductase SDR TERM 2740 3901723 - 3901744 + r 77 -12.9 -3.54424 | opp_overlap 3901723 TGCCGCAACGAAAAA GGCGGCGCC TTAC GGCACCGCC TTTCGAAACGTCAGA TERM 2741 3901744 - 3901723 - R 100 -15.1 -4.8622 | opp_overlap 3901723 TGCCGCAACGAAAAA GGCGGCGCC TTAC GGCACCGCC TTTCGAAACGTCAGA Rpal_3641 3902194 - 3901775 - | ribosomal protein L17 TERM 2742 3902298 - 3902288 - R 71 -8.2 -3.87815 | CCTCATCCTGAGAAA CGGC TGG GCCG CTCCGCGCGATGAGG TERM 2743 3902344 - 3902317 - R 90 -15.6 -3.78775 | opp_overlap 3902312, overlap 3902318 CGCGCGATGAGGAAA GCGGCCTCATGG CGAG CCATGAGGCCGA TCGGCTTAGTAGTGA TERM 2744 3902343 - 3902318 - R 91 -19.1 -2.87051 | opp_overlap 3902312, overlap 3902317 GCGCGATGAGGAAAG CGGCCTCATGG CGAG CCATGAGGCCG ATCGGCTTAGTAGTG Rpal_3642 3903369 - 3902350 - | DNA-directed RNA polymerase, alpha subunit TERM 2745 3903495 - 3903469 - R 100 -20.2 -3.80745 | overlap 3903460 AAACAACGAATAGAA TCACCGGCGGCC TGG GACCGCCGGTGA ACAAAACTCAGACGC Rpal_3643 3903892 - 3903503 - | ribosomal protein S11 TERM 2746 3904013 - 3903956 - R 93 -19.3 -3.33483 | overlap 3903966 3903969 CACCGAAACGACGAA TGGCGAACAACAAGTGGCGAATAGGGG AAGT CCCCTACTCGCCATTCGCCATTCGCAA CTCGCAAACTTACTT TERM 2747 3904003 - 3903966 - R 100 -17.1 -3.65581 | overlap 3903956 3903969 ACGAATGGCGAACAA CAAGTGGCGAATAGGGG AAGT CCCCTACTCGCCATTCG CCATTCGCAACTCGC TERM 2748 3904000 - 3903969 - R 91 -15.2 -3.95725 | overlap 3903966 3903956 AATGGCGAACAACAA GTGGCGAATAGGGG AAGT CCCCTACTCGCCAT TCGCCATTCGCAACT Rpal_3644 3904391 - 3904023 - | ribosomal protein S13 Rpal_3645 3904501 - 3904406 - | hypothetical protein Rpal_3646 3905679 - 3904576 - | adenylate kinase TERM 2749 3904654 - 3904666 + g 84 -6.9 -4.75404 | opp_overlap 3904638, overlap 3904638 3904637 3904660 CGCCTTGGCCTTCGA GGTCG CGG CGGCC TTTTTGGTCGCCTTT TERM 2750 3904660 - 3904678 + g 84 -9.5 -4.56597 | opp_overlap 3904638, overlap 3904638 3904637 3904654 GGCCTTCGAGGTCGC GGCGGCC TTTTT GGTCGCC TTTTTGCCAGCCGCC TERM 2751 3904738 - 3904753 + g 83 -8.2 -4.58685 | overlap 3904747 CTTGGCGGCCTTCAC GGCTGC CTTG GCGGCC TTTTTGCCAGCCTTT Rpal_3647 3907007 - 3905676 - | preprotein translocase, SecY subunit TERM 2752 3907120 - 3907104 - R 78 -6.5 -4.57073 | overlap 3907106 3907108 GAGCGCGTCGAAAAA TCCACCG TAC CGGCGAA GCCGGGCGCCCGCTA Rpal_3648 3907645 - 3907160 - | ribosomal protein L15 Rpal_3649 3907852 - 3907658 - | ribosomal protein L30 TERM 2753 3907910 - 3907885 - R 73 -13.3 -3.21276 | opp_overlap 3907885 3907887, overlap 3907883 CGTCTTGTCAGAAGA CCGCGTGATCG CCCT CGATCACGCTG TTATTCGGCCACCAC TERM 2754 3907885 - 3907910 + r 77 -13.3 -3.61398 | opp_overlap 3907883 3907885, overlap 3907887 CGTCTTGTCAGAAGA CCGCGTGATCG CCCT CGATCACGCTG TTATTCGGCCACCAC TERM 2755 3907887 - 3907908 + r 82 -14.5 -3.38812 | opp_overlap 3907885 3907883, overlap 3907885 TCTTGTCAGAAGACC GCGTGATCG CCCT CGATCACGC TGTTATTCGGCCACC Rpal_3650 3908486 - 3907911 - | ribosomal protein S5 Rpal_3651 3908909 - 3908547 - | ribosomal protein L18 TERM 2756 3908694 - 3908733 + g 71 -12.8 -3.28712 | gap 1, overlap 3908677 3908689 3908696 GACGGCCTTGGCGGC GTCGATGTTCG-CGCCGGT GTT GCCGGCGTCGCGCATCGTC TTCTCCAGCGACGAG TERM 2757 3908696 - 3908731 + g 73 -14 -3.21276 | gap 1, overlap 3908677 3908689 3908694 CGGCCTTGGCGGCGT CGATGTTCG-CGCCGGT GTT GCCGGCGTCGCGCATCG TCTTCTCCAGCGACG TERM 2758 3908844 - 3908817 - G 73 -11.2 -3.68351 | CTTGGACGAGCGAAA CACCGACAGCCG CGGA CGGCCGTTGGCG GTGCGCCGCAGCGCA Rpal_3652 3909454 - 3908921 - | ribosomal protein L6 TERM 2759 3909527 - 3909560 + r 88 -14.5 -3.75153 | gap 1 AATTTCCGCTCTTTC GCGCGCCCGGGCCGGA CTG TCCGGCC-GTTCGCGC TTTCGATTAGAACAC Rpal_3653 3909965 - 3909567 - | ribosomal protein S8 Rpal_3654 3910286 - 3909981 - | ribosomal protein S14 Rpal_3655 3910887 - 3910330 - | ribosomal protein L5 Rpal_3656 3911194 - 3910880 - | ribosomal protein L24 Rpal_3657 3911562 - 3911194 - | ribosomal protein L14 Rpal_3658 3911874 - 3911626 - | ribosomal protein S17 Rpal_3659 3912096 - 3911887 - | ribosomal protein L29 Rpal_3660 3912515 - 3912102 - | ribosomal protein L16 Rpal_3661 3913255 - 3912548 - | ribosomal protein S3 Rpal_3662 3913661 - 3913278 - | ribosomal protein L22 Rpal_3663 3913950 - 3913672 - | ribosomal protein S19 Rpal_3664 3914798 - 3913962 - | ribosomal protein L2 Rpal_3665 3915111 - 3914812 - | Ribosomal protein L25/L23 Rpal_3666 3915728 - 3915108 - | ribosomal protein L4/L1e Rpal_3667 3916455 - 3915730 - | ribosomal protein L3 Rpal_3668 3916814 - 3916506 - | ribosomal protein S10 TERM 2760 3916845 - 3916891 + r 91 -19.4 -3.04501 | overlap 3916850 TTCGTGTCGCGAATG GTGAGTAGTGAGCAGCGGACGG ACA CCGTCCGCCGCCCTCTATTCGC TATTCCCCGCTTACT TERM 2761 3916850 - 3916886 + r 86 -16.5 -3.1855 | overlap 3916845 GTCGCGAATGGTGAG TAGTGAGCAGCGGACGG ACA CCGTCCGCCGCCCTCTA TTCGCTATTCCCCGC Rpal_3669 3918092 - 3916902 - | translation elongation factor Tu TERM 2762 3916944 - 3916971 + g 81 -7.7 -4.67982 | gap 1, overlap 3916960 GGCGCCCACCGTGCG GCCGC-CTTCGC GGATG GCGAAGCGCAGC TTTTCTTCCATCGCG Rpal_3670 3920203 - 3918131 - | translation elongation factor G Rpal_3671 3920704 - 3920234 - | ribosomal protein S7 Rpal_3672 3921091 - 3920720 - | ribosomal protein S12 TERM 2763 3921300 - 3921279 - H 71 -11.5 -3.4582 | opp_overlap 3921279, overlap 3921277 GGACCGCAGCAAAGA CCGGGCAGC TTCC GCTGACCGG TTCCTACCGAGGTCA Rpal_3673 3921956 - 3922939 + | hypothetical protein Rpal_3674 3923859 - 3923038 - | transcriptional regulator, AraC family Rpal_3675 3923995 - 3924690 + | O-methyltransferase family 3 Rpal_3676 3925303 - 3926505 + | HNH endonuclease Rpal_3677 3927534 - 3926656 - | transcriptional regulator, LysR family Rpal_3678 3927634 - 3928851 + | protein of unknown function DUF1228 Rpal_3679 3930975 - 3928846 - | heavy metal translocating P-type ATPase TERM 2764 3930586 - 3930542 - G 77 -16.3 -2.53263 | overlap 3930565 TCGATGCTGAAGGGA GATCCCGAACGCGTGCCGATC AAG GCCCGGCGGGCGATCGGGATC AGACAAATCGCGGCC TERM 2765 3930680 - 3930669 - G 77 -3.6 -4.80882 | overlap 3930670 ACGCCAGAGCAAAAA CCGC CGCT GCGA TCATGACCGATTGCA Rpal_3680 3931041 - 3931442 + | transcriptional regulator, MerR family Rpal_3681 3932693 - 3931485 - | major facilitator superfamily MFS_1 TERM 2766 3932791 - 3932744 - R 93 -20 -3.09635 | opp_overlap 3932752 3932756, overlap 3932748 3932752 3932756 3932760 ATTGCGAGGAGCGAA GCTACGAAGCAATCCAGCTCAG TGCG CGAAGCTGGATTGCTTCGCTGC GCTCGCAATGGCGTT TERM 2767 3932787 - 3932748 - R 90 -20.2 -2.55544 | opp_overlap 3932752 3932756, overlap 3932744 3932752 3932756 3932760 CGAGGAGCGAAGCTA CGAAGCAATCCAGCTCAG TGCG CGAAGCTGGATTGCTTCG CTGCGCTCGCAATGG TERM 2768 3932783 - 3932752 - R 76 -13.8 -3.22388 | opp_overlap 3932752 3932756, overlap 3932748 3932744 3932756 3932760 GAGCGAAGCTACGAA GCAATCCAGCTCAG TGCG CGAAGCTGGATTGC TTCGCTGCGCTCGCA Rpal_3682 3933337 - 3932909 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpal_3683 3933482 - 3933943 + | transcriptional regulator, MarR family Rpal_3684 3936152 - 3934008 - | ABC transporter related TERM 2769 3936230 - 3936196 - R 81 -12.1 -3.85864 | opp_overlap 3936195, overlap 3936197 GCAGGACTACAATAA GCGACGCCGTGACTC GTTCA AAGCCACGGCGCCGG ATCTGCTGAAGCGAA TERM 2770 3936229 - 3936197 - R 79 -15.6 -2.91036 | opp_overlap 3936195, overlap 3936196 CAGGACTACAATAAG CGACGCCGTGACTC GTTCA AAGCCACGGCGCCG GATCTGCTGAAGCGA Rpal_3685 3938335 - 3936272 - | amine oxidase TERM 2771 3938614 - 3938582 - R 90 -17.8 -2.87463 | opp_overlap 3938579, overlap 3938589 AATGCGGCCCAGATA TGAGAAAGGCCGGC ACAAG GCCGGCCCTTCCCA GGATTGAATGGCAGA TERM 2772 3938607 - 3938589 - R 86 -13.1 -4.04318 | opp_overlap 3938579, overlap 3938582 CCCAGATATGAGAAA GGCCGGC ACAAG GCCGGCC CTTCCCAGGATTGAA Rpal_3686 3942840 - 3938638 - | DNA-directed RNA polymerase, beta' subunit TERM 2773 3938953 - 3938965 + g 70 -10.5 -3.66018 | opp_overlap 3938951 GAGCAGCACAGGATT GCCGG TTG CCGGC TTCTTGCCCTCCTCG TERM 2774 3942222 - 3942247 + g 72 -6.7 -4.19238 | overlap 3942224 AGTCGGTCTCGGCCA TCTCGGCGCGC AGCT GCGCGTCGATC TTTTCGAGTTCGAGC TERM 2775 3942224 - 3942245 + g 80 -13.7 -3.69618 | overlap 3942222 TCGGTCTCGGCCATC TCGGCGCGC AGCT GCGCGTCGA TCTTTTCGAGTTCGA TERM 2776 3942968 - 3942935 - R 93 -20.9 -2.87211 | opp_overlap 3942927, overlap 3942954 AGCGCGGCGGAGACA CCCGGCGGCCGGCGC AAAA GCGCACGCCGCCGGG CTTGACGCGTTGAGT Rpal_3687 3947107 - 3942983 - | DNA-directed RNA polymerase, beta subunit TERM 2777 3947290 - 3947258 - R 76 -7.6 -4.27584 | gap 1, overlap 3947261 ATTCCGAACGCAAAA TAACGCGCGGG-GCG CTGC CGCACCCGCCCGTCG AAAACCTCATCGTCA TERM 2778 3947287 - 3947261 - R 89 -11.5 -4.25859 | gap 1, overlap 3947258 CCGAACGCAAAATAA CGCGCGGG-GCG CTGC CGCACCCGCCCG TCGAAAACCTCATCG Rpal_3688 3947950 - 3947573 - | ribosomal protein L7/L12 TERM 2779 3947998 - 3948019 + r 70 -8 -4.08767 | CAGGGTTGATTGGGA GTGAAGCG TCAGGC CGCTTCGC TTTTGGAGGCATAGG Rpal_3689 3948524 - 3948006 - | ribosomal protein L10 TERM 2780 3948448 - 3948503 + g 100 -9.6 -5.42862 | gap 1, overlap 3948445 3948450 3948452 AGGCCGGAATAGTGA GCGACGATCGCGACGCTGG-TGGTCTG GAA CAGACCATTCAGCGATTCGACCGCCTC TTTTTTTGCCGCTCT TERM 2781 3948450 - 3948501 + g 93 -10.8 -4.35085 | gap 1, overlap 3948445 3948448 3948452 GCCGGAATAGTGAGC GACGATCGCGACGCTGG-TGGTCTG GAA CAGACCATTCAGCGATTCGACCGCC TCTTTTTTTGCCGCT Rpal_3690 3950377 - 3949427 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 2782 3950420 - 3950445 + r 84 -16.1 -3.07222 | opp_overlap 3950420 ACGAGCAAACAAAAA GGGCGAACGGG TTGC CCCGTCCGCCC TCTTCAAATCATCAT TERM 2783 3950445 - 3950420 - R 100 -18.3 -5.34309 | opp_overlap 3950420 ACGAGCAAACAAAAA GGGCGAACGGG TTGC CCCGTCCGCCC TCTTCAAATCATCAT Rpal_3691 3951166 - 3950477 - | ribosomal protein L1 Rpal_3692 3951602 - 3951174 - | ribosomal protein L11 Rpal_3693 3952355 - 3951825 - | NusG antitermination factor Rpal_3694 3952560 - 3952372 - | preprotein translocase, SecE subunit TERM 2784 3952644 - 3952624 - R 73 -12.5 -3.17075 | overlap 3952608 3952606 CCCCGGTGAACCCAA CCCTGGCGA TCC TCGCCGGGG ATGAGCCGACAACGG TERM 2785 3952952 - 3952904 - R 70 -8 -4.04206 | gap 2 CTAGTCCGAGACAAA TCCGACCGGCACCGTCAGGCTCCG GCT CGCA-CCGGGCGGCGGCGG-CGGA ACCGGAGATGCGCGC Rpal_3695 3953737 - 3952889 - | TonB family protein Rpal_3696 3954183 - 3953734 - | Biopolymer transport protein ExbD/TolR Rpal_3697 3955148 - 3954198 - | tonB-system energizer ExbB Rpal_3698 3955828 - 3955145 - | Haem oxygenase-like protein Rpal_3699 3959490 - 3955930 - | TonB-dependent heme/hemoglobin receptor family protein Rpal_3700 3960531 - 3959566 - | anti-FecI sigma factor, FecR Rpal_3701 3961204 - 3960674 - | RNA polymerase, sigma-24 subunit, ECF subfamily Rpal_3702 3962039 - 3961713 - | hypothetical protein TERM 2786 3961798 - 3961814 + g 71 -15.1 -2.57132 | overlap 3961797 GCGCATTCCCGGTTG GCGCCGG TGC CCGGCGC GTTCTCGAAGACGCA TERM 2787 3962029 - 3961991 - G 100 -14 -4.55128 | gap 1, opp_overlap 3961996, overlap 3961994 3961996 ATGCGCAAACGAAAA GAATAGCCGCGCATACG GCAAAG CGTACGCGCGGCT-TCC TTAAGCTCATCACGT TERM 2788 3962027 - 3961994 - G 100 -14.6 -4.38472 | opp_overlap 3961996, overlap 3961991 3961996 CGCAAACGAAAAGAA TAGCCGCGCATACG GCAAAG CGTACGCGCGGCTT CCTTAAGCTCATCAC TERM 2789 3961996 - 3962025 + g 80 -15 -3.36289 | opp_overlap 3961996 3961994 3961991 CAAACGAAAAGAATA GCCGCGCATACG GCAAAG CGTACGCGCGGC TTCCTTAAGCTCATC TERM 2790 3962025 - 3961996 - G 95 -17.2 -3.78172 | opp_overlap 3961996, overlap 3961994 3961991 CAAACGAAAAGAATA GCCGCGCATACG GCAAAG CGTACGCGCGGC TTCCTTAAGCTCATC Rpal_3703 3963246 - 3962056 - | translation elongation factor Tu TERM 2791 3962098 - 3962125 + g 81 -7.7 -4.67982 | gap 1, overlap 3962114 GGCGCCCACCGTGCG GCCGC-CTTCGC GGATG GCGAAGCGCAGC TTTTCTTCCATCGCG Rpal_3704 3963432 - 3964655 + | beta-lactamase TERM 2792 3964672 - 3964713 + T 93 -13.7 -4.12296 | gap 1, overlap 3964674 3964676 CGCCGTTCTCTCCGA GTCATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATCTC TTCTTTGCTTATAAC TERM 2793 3964674 - 3964711 + T 85 -14.9 -3.64905 | gap 1, overlap 3964672 3964676 CCGTTCTCTCCGAGT CATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATC TCTTCTTTGCTTATA TERM 2794 3964676 - 3964709 + T 91 -17.5 -3.38446 | gap 1, overlap 3964674 3964672 GTTCTCTCCGAGTCA TTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAA TCTCTTCTTTGCTTA TERM 2795 3964731 - 3964770 + T 70 -12.8 -2.93585 | gap 1, opp_overlap 3964729 3964728, overlap 3964728 CTTTGCTTATAACTT CGGGATTCCGGGTTCGCGC TTC GCGCGC-CCCGGAATGACG TCCTTTGAGGTCTAG Rpal_3705 3965576 - 3964809 - | short-chain dehydrogenase/reductase SDR Rpal_3706 3966515 - 3965760 - | Phosphoglycerate mutase Rpal_3707 3966672 - 3967457 + | short-chain dehydrogenase/reductase SDR TERM 2796 3967507 - 3967466 - f 77 -13.7 -3.32498 | gap 1, opp_overlap 3967465 3967470, overlap 3967470 GATCTGAGAGACCAA GTCATTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAATCTC ATCTTACCAATCTCG TERM 2797 3967503 - 3967470 - f 83 -17.5 -2.59686 | gap 1, opp_overlap 3967465 3967470, overlap 3967466 TGAGAGACCAAGTCA TTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAA TCTCATCTTACCAAT TERM 2798 3967470 - 3967503 + F 87 -17.5 -2.91728 | gap 1, opp_overlap 3967470 3967466, overlap 3967465 TGAGAGACCAAGTCA TTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAA TCTCATCTTACCAAT Rpal_3708 3967699 - 3968658 + | transposase IS116/IS110/IS902 family protein TERM 2799 3968711 - 3968742 + T 79 -10.8 -3.9392 | gap 1, opp_overlap 3968715, overlap 3968715 ATGACCGGATGATAG AAAAGGCGCGG-CCG TTT CGGACCGCGCCTTCA TTGTTTGGAATAGAA TERM 2800 3968715 - 3968738 + T 91 -16 -3.62054 | gap 1, opp_overlap 3968715, overlap 3968711 CCGGATGATAGAAAA GGCGCGG-CCG TTT CGGACCGCGCC TTCATTGTTTGGAAT TERM 2801 3968738 - 3968715 - T 100 -16 -4.57353 | gap 1, opp_overlap 3968711 3968715 CCGGATGATAGAAAA GGCGCGG-CCG TTT CGGACCGCGCC TTCATTGTTTGGAAT Rpal_3709 3969827 - 3968769 - | aminoglycoside phosphotransferase TERM 2802 3969931 - 3969959 + r 83 -6.8 -4.83615 | gap 2, opp_overlap 3969930 3969928, overlap 3969931 3969931 ATCTTTTCAAGAGAT GG--ATCGCCGGAT CAA GTCCGGCGATGACC TTTTTATGCGGCCTA Rpal_3710 3971211 - 3969979 - | acyl-CoA dehydrogenase domain protein Rpal_3711 3971456 - 3972118 + | transcriptional regulator, TetR family Rpal_3712 3973809 - 3972148 - | putative membrane transport protein Rpal_3713 3974285 - 3974019 - | hypothetical protein TERM 2803 3974142 - 3974193 + g 74 -12.8 -3.51825 | gap 1, opp_overlap 3974151, overlap 3974141 3974166 GGCCGAGCTGATATG CCAACGCAACGC-CAGCGCCGGACG CGG CGTCCGGCGCGGCGTGCTGCGGACG TTGTCGTTGGCGTGG TERM 2804 3974182 - 3974151 - G 100 -23.8 -3.1875 | gap 1, opp_overlap 3974141 3974142 3974166 GATATGCCAACGCAA CGCCAGCGCCGGACG CGG CGTCCGGCGC-GGCG TGCTGCGGACGTTGT TERM 2805 3974325 - 3974288 - R 71 -14.1 -2.64735 | gap 1 AGTTGATCGACATCA CTCACCTCCACGGCCGCG GAA CGCGGCGG-GACGGTGAG ATCAGGCGGCTAGCA Rpal_3714 3975363 - 3974611 - | ABC transporter related Rpal_3715 3976130 - 3975360 - | ABC transporter related Rpal_3716 3977350 - 3976127 - | inner-membrane translocator Rpal_3717 3978362 - 3977355 - | inner-membrane translocator TERM 2806 3978522 - 3978566 + r 95 -18.6 -3.40403 | gap 1, opp_overlap 3978523, overlap 3978523 TGCTGCTCAAGAGAC ACGTGGC-GGTCGGCTGCGCC CCAC GGCTCAGCCGACCGGTCACGA TTGTGCTCGCCGGGC TERM 2807 3978565 - 3978523 - R 93 -19.9 -3.09273 | gap 1, opp_overlap 3978523 3978522 GCTGCTCAAGAGACA CGTGGC-GGTCGGCTGCGCC CCAC GGCTCAGCCGACCGGTCACG ATTGTGCTCGCCGGG TERM 2808 3978523 - 3978565 + r 100 -22.1 -2.64099 | gap 1, opp_overlap 3978523, overlap 3978522 GCTGCTCAAGAGACA CGTGGC-GGTCGGCTGCGCC CCAC GGCTCAGCCGACCGGTCACG ATTGTGCTCGCCGGG Rpal_3718 3979961 - 3978609 - | branched-chain amino acid ABC transporter, periplasmic binding protein, putative Rpal_3719 3981792 - 3980407 - | hypothetical protein TERM 2809 3981545 - 3981526 - G 74 -15 -3.05384 | GGTCGCTGCATCGAA CGCCGGCA GGAT TGCCGGCG CGTTGAACAGCGGGA TERM 2810 3981926 - 3981884 - R 100 -14.9 -4.89521 | gap 2, opp_overlap 3981880, overlap 3981872 AGAGCGCAAAGAAAA CGCCGCGCAGGAAAACGCCTC GAT AAGGCGAT--CCCGCGCGGCG CTGATGATGTGTGGC Rpal_3720 3983512 - 3981956 - | AMP-dependent synthetase and ligase Rpal_3721 3984212 - 3983430 - | transcriptional regulator, TetR family Rpal_3722 3984339 - 3985523 + | Propanoyl-CoA C-acyltransferase TERM 2811 3985585 - 3985608 + G 77 -7.4 -4.37092 | overlap 3985587 3985588 GCCGGTGACCGCCCA TGTCGAAGCC GGCC GGCTTCGCTA TTTTCTCGACACCCT Rpal_3723 3985535 - 3985981 + | hypothetical protein Rpal_3724 3985978 - 3986403 + | MaoC domain protein dehydratase Rpal_3725 3986427 - 3987254 + | short-chain dehydrogenase/reductase SDR Rpal_3726 3987269 - 3988045 + | Enoyl-CoA hydratase/isomerase Rpal_3727 3988307 - 3989416 + | nitrite reductase, copper-containing Rpal_3728 3990216 - 3989446 - | exodeoxyribonuclease III Xth Rpal_3729 3991235 - 3990366 - | hypothetical protein Rpal_3730 3991661 - 3992170 + | protein of unknown function DUF892 Rpal_3731 3992185 - 3992751 + | hypothetical protein TERM 2812 3992776 - 3992803 + F 100 -24.2 -4.77165 | TTACGTATGACGGCC CGGCCCGGCGGA GCAA TCCGCCGGGCCG TTTTGTTGTGAGGCG TERM 2813 3994187 - 3994163 - g 77 -9.9 -3.98113 | overlap 3994164 CAACTATCAACCAAA CTCGCACGGCC TCG GTCCGCGCGAA TCTCCGCAGCGCGGC Rpal_3732 3992895 - 3995012 + | Catalase TERM 2814 3995290 - 3995247 - g 70 -10.2 -3.70149 | overlap 3995282 CCGACACCACCGAAA CGCTGGAGCTGCCGCCGG AGACCAAG CCGGCAGAACCTGCAGCG AAGCCGCAGGCGGTC TERM 2815 3995300 - 3995282 - g 71 -12.4 -3.31501 | overlap 3995247 ACCAAGCCGGCAGAA CCTGCAGC GAA GCCGCAGG CGGTCCCCGGGTACA Rpal_3733 3995228 - 3997429 + | glycogen debranching enzyme GlgX Rpal_3734 3997589 - 3998437 + | transglutaminase domain protein TERM 2816 3998466 - 3998497 + T 84 -15.4 -3.38316 | gap 1, opp_overlap 3998465 3998470 3998474, overlap 3998470 3998474 AGGTTGCGAGTACAG CGAAGCAATCCA-AG CCT CTCTGGATTGCTTCG TTGCTTCGCTCCTCG TERM 2817 3998600 - 3998571 - T 81 -7.7 -4.52345 | overlap 3998572 3998574 AGAGCACCAAAGAAA GCAGCGGCCGGGC TTGC ACCCGACCGCTTG AGACCAAGACCAAAA TERM 2818 3998597 - 3998574 - T 76 -13.8 -3.20639 | overlap 3998572 3998571 GCACCAAAGAAAGCA GCGGCCGGGC TTGC ACCCGACCGC TTGAGACCAAGACCA Rpal_3735 3998831 - 3998619 - | hypothetical protein Rpal_3736 4000101 - 3998902 - | 2-alkenal reductase TERM 2819 3999655 - 3999682 + g 70 -12 -3.36327 | opp_overlap 3999646 GACGAATTCGCCCGA CGCCAGCCGG ACGCCCAG CTGGCTGGCG TTCTGGATGACATGG TERM 2820 4000163 - 4000119 - H 75 -12 -3.61398 | overlap 4000121 GCGTGTCTCGAAGAA CAGCAGGTTGGCCCGACGGA CCGGT TCCGTCGCGCCGGCCAGCTA ATGCGCCAAGTTCCG TERM 2821 4000161 - 4000121 - H 72 -12.4 -3.38812 | overlap 4000119 GTGTCTCGAAGAACA GCAGGTTGGCCCGACGGA CCGGT TCCGTCGCGCCGGCCAGC TAATGCGCCAAGTTC Rpal_3737 4000402 - 4001076 + | peptidase M50 Rpal_3738 4001981 - 4001763 - | hypothetical protein TERM 2822 4003064 - 4003028 - g 72 -4.3 -4.48987 | opp_overlap 4003031, overlap 4003030 CGGCTACAAGCAAAA CACCCTCATCCGCCG AATTCAG CGCCGGATGCAGGTT CTTCAGATCGAGTCG TERM 2823 4003736 - 4003718 - g 81 -5.2 -4.83615 | CATCGTCGACAAAAA GCACCGCA TCC TGCAACGC CGAGACGGCGCCAGA TERM 2824 4004088 - 4004063 - g 77 -3.1 -4.89477 | opp_overlap 4004085 4004086, overlap 4004081 GGTTGAAGAAGAAAA CCTGAGACTCG AAGG CAAGCCGCCGG TCGACCTCGTCGTCG Rpal_3739 4002282 - 4005419 + | MCP methyltransferase, CheR-type Rpal_3740 4005886 - 4005488 - | hypothetical protein Rpal_3741 4006626 - 4005898 - | transcriptional regulator, Crp/Fnr family TERM 2825 4006577 - 4006553 - G 70 -6.3 -4.16842 | GCCACTCCGAACAAA GCCCGCTGATC TGA GATCGGCAGTC CCCCCCGAAACAGCA Rpal_3743 4007763 - 4008443 + | hypothetical protein Rpal_3744 4010067 - 4008571 - | phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II Rpal_3745 4011550 - 4010114 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Rpal_3746 4013558 - 4011786 - | hypothetical protein Rpal_3747 4014768 - 4013899 - | hypothetical protein TERM 2826 4014881 - 4014859 - H 71 -8.3 -3.85698 | overlap 4014860 GCCCTCGCTCACAAA TGGCGGCAG GTCGT CCGCCGCCT CCAGATCGGCAGCGC TERM 2827 4015471 - 4015437 - H 79 -8.1 -4.37711 | gap 2, opp_overlap 4015445, overlap 4015439 4015445 GGACGAAAGCGAAAA TGGCAAAATTCGGCCAC GAC GTGACCGAA-TTTGC-A CGGGAATCTGGTCAG TERM 2828 4015465 - 4015445 - H 91 -11.9 -4.28049 | opp_overlap 4015445, overlap 4015439 4015437 GCGAAAATGGCAAAA TTCGGCCAC GAC GTGACCGAA TTTGCACGGGAATCT TERM 2829 4015658 - 4015674 + H 74 -13.7 -2.87132 | TCTCGGAGCAGGCGC GCAGCCG GCG CGGCTGC TGTATGGCACCCCAA Rpal_3748 4016464 - 4016949 + | hypothetical protein Rpal_3749 4017970 - 4017554 - | helix-turn-helix domain protein TERM 2830 4018338 - 4018313 - R 100 -20.5 -4.63218 | opp_overlap 4018333 GCCGCCTGAAGAAAA GACGGCGGGAC CGAG GTCCCGCCGTC CGAAGGCATCTTAGT Rpal_3750 4020106 - 4018349 - | Curlin associated repeat protein TERM 2831 4021000 - 4020988 - g 72 -5.5 -4.30576 | TCGCCAGCAGCAAAA GCTCG GTC CGAAC TAACGATAAGATCCA Rpal_3751 4020664 - 4021047 + | hypothetical protein Rpal_3752 4021032 - 4021562 + | hypothetical protein Rpal_3753 4021595 - 4021879 + | hypothetical protein TERM 2832 4022173 - 4022203 + G 71 -12.6 -3.3095 | gap 1 AACTTCGCGGAGTTC TCGCGC-GCCGTC ACGCAA GGCGGCAGCGCGA TTCTCACCGATGTGT Rpal_3754 4021936 - 4022811 + | Curli production assembly/transport component CsgG Rpal_3755 4023453 - 4023064 - | hypothetical protein TERM 2833 4023478 - 4023496 + r 71 -11 -3.52102 | overlap 4023466 CCTCGCGATGGGAGA TCGTCCGT CCC GCGGACGA TTCTCTCGATCCCGT Rpal_3756 4023929 - 4023588 - | hypothetical protein Rpal_3757 4024289 - 4024104 - | hypothetical protein TERM 2834 4024202 - 4024223 + g 73 -12.9 -3.23042 | overlap 4024215 4024217 ACTGGAGTTCAGCCA GCGGGCCCG ATGA CGGGCCGGC TTCGTCGTCCGTATT Rpal_3758 4025202 - 4024495 - | 4'-phosphopantetheinyl transferase Rpal_3759 4026246 - 4025218 - | Platelet-activating factor acetylhydrolase plasma/intracellular isoform II Rpal_3760 4028697 - 4026388 - | condensation domain protein Rpal_3761 4036742 - 4028694 - | amino acid adenylation domain protein TERM 2835 4031101 - 4031074 - G 74 -9.8 -3.76224 | overlap 4031075 TGCCGATCCAGCAAA GCCTGACCGCCC ATCG GGACGGTCAAGA CAACGCGCTCGTTGT TERM 2836 4032436 - 4032412 - G 70 -9.9 -3.72695 | overlap 4032387 AGCGCGTCCATGAAA TCCGCGCGGCC GGC GACCACGCCGA TTGGCATTCCTCCGC TERM 2837 4036476 - 4036463 - G 74 -8.1 -4.26344 | AGATCTCGAGGAAAA TCCGC TGCT GCGGA TCGGTCAAATCCGCT Rpal_3762 4038678 - 4036765 - | amino acid adenylation domain protein TERM 2838 4038336 - 4038324 - G 70 -6.2 -4.17048 | opp_overlap 4038327 GCTCCGTCAAAACAA GCGC CGGCT GCGC ATCCTGGATGGCGCC TERM 2839 4039299 - 4039333 + G 70 -8.4 -3.91858 | GCTATGGGCAGGCAG CGGACGCAGCGATGTG GGA TACGCCGGCGCGTCCG TTTCTACGATCTGTG TERM 2840 4040022 - 4040043 + G 76 -14.5 -3.21218 | overlap 4040012 CCACGCCGCGGCGCC TCGCGATCG TTCG CGATCGCGA TTACTCATACGGGAT Rpal_3763 4039166 - 4040305 + | acyltransferase 3 TERM 2841 4042162 - 4042174 + G 73 -9.1 -3.96148 | CATCAACGCGATTGC CTCGC CCA GCGAG TTTCTGATCAAGGAC Rpal_3764 4040396 - 4042213 + | hypothetical protein Rpal_3765 4042276 - 4043397 + | glycosyl transferase group 1 TERM 2842 4043729 - 4043704 - g 73 -9.1 -3.90112 | gap 1, overlap 4043708 4043727 GGCTCCTCAAGCAAA CGA-ACTCTCCA CGC TGGAGAGCATCG GCGAGCCGAACGCCC TERM 2843 4043724 - 4043708 - g 70 -10.9 -3.61468 | overlap 4043704 CCTCAAGCAAACGAA CTCTCCA CGC TGGAGAG CATCGGCGAGCCGAA Rpal_3766 4043534 - 4045282 + | GMC oxidoreductase Rpal_3767 4046719 - 4045277 - | putative membrane protein of unknown function TERM 2844 4047783 - 4047807 + G 85 -9.9 -4.1822 | overlap 4047778 4047783 GAGCGTCTTTCGCTT GCGCGGCGGCG CTT TGTTGTCGCGC TTTCTTCCACTCAGG TERM 2845 4047783 - 4047794 + G 75 -7.2 -4.31835 | overlap 4047778 4047783 GAGCGTCTTTCGCTT GCGC GGCG GCGC TTTGTTGTCGCGCTT Rpal_3768 4047213 - 4048313 + | glycosyl transferase group 1 TERM 2846 4048534 - 4048552 + G 71 -12.4 -3.26428 | overlap 4048529 4048536 AATCCGGGACTTCCC GTGCAGCG CAA CGCTGCGC TTGAGTTGCTTCTTG Rpal_3769 4048336 - 4049226 + | glycosyl transferase group 1 Rpal_3770 4050824 - 4049331 - | polysaccharide biosynthesis protein Rpal_3771 4052102 - 4050966 - | acyltransferase 3 TERM 2847 4051166 - 4051135 - G 72 -11.6 -3.6106 | GGCAACATTCCGAAA CCAAGGTGGGACAT CACG ATGCCCCACATCGG CAGCGCGAACACCTG TERM 2848 4053605 - 4053593 - g 71 -3.4 -4.66953 | overlap 4053584 GGAAGACGCCAAAAA GTTC GCGCA GAAC CGGGGTGTCGATCGG Rpal_3772 4052712 - 4053857 + | DegT/DnrJ/EryC1/StrS aminotransferase Rpal_3773 4053933 - 4054739 + | glycosyl transferase family 25 TERM 2849 4055874 - 4055859 - g 76 -8.2 -4.25104 | TTGTTGGCAGCAAAA GCGCAG GCCA CCGCGC GCAACAGAGGCTAGC Rpal_3774 4054770 - 4055888 + | glycosyl transferase group 1 Rpal_3775 4056661 - 4055885 - | metallophosphoesterase TERM 2850 4056890 - 4056877 - H 72 -2.5 -4.72556 | CTAAAAACTACAAAA TTTAT ATTC ATAAA CAGTACCTTGGAGTC Rpal_3776 4056911 - 4057549 + | putative exported protein of unknown function Rpal_3777 4057608 - 4059956 + | capsular exopolysaccharide family Rpal_3778 4060013 - 4060669 + | putative exported protein of unknown function TERM 2851 4061675 - 4061688 + G 73 -3.7 -4.68645 | CCTTGATCTTCTCTT GGCGC TTTC GGGCC TTTTGATTTTGGCTC Rpal_3779 4061574 - 4062248 + | Undecaprenyl-phosphate galactose phosphotransferase Rpal_3780 4063029 - 4063691 + | transglutaminase family protein cysteine peptidase BTLCP Rpal_3781 4065185 - 4063752 - | O-antigen polymerase Rpal_3782 4066390 - 4065182 - | polysaccharide export protein Rpal_3783 4067152 - 4067403 + | conserved hypothetical protein, putative membrane protein Rpal_3784 4067632 - 4067913 + | putative exported protein of unknown function Rpal_3785 4068807 - 4068532 - | hypothetical protein TERM 2852 4069141 - 4069176 + H 84 -11.3 -4.12942 | overlap 4069145 GCTCCGGGTTCCACT CCTATGGGAAGCTAA CTCAAC TTAGCTTCCCATGAG TTTTCAGCCATTTAC TERM 2853 4069265 - 4069294 + H 71 -5.5 -4.37092 | opp_overlap 4069242, overlap 4069267 CGCGAGCGTGCCCCA GATGGGACCCAGT TTCG GCCGGGACCCAGC TTTTCTGGAGACGCT TERM 2854 4070218 - 4070238 + G 70 -8.9 -3.9122 | CGAGGTCAATTCGGA GTCGGCATG GTA CGTGCCGCC TTATTTCAGGAAGTC TERM 2855 4070469 - 4070481 + G 74 -7.7 -4.21194 | GCTGGTCGCCGCACG GCGTA AGG TACGC TTTTGCATCGTACGG Rpal_3786 4069313 - 4070770 + | hypothetical protein Rpal_3787 4071070 - 4070798 - | hypothetical protein Rpal_3788 4071710 - 4071081 - | hypothetical protein TERM 2856 4071556 - 4071500 - G 77 -13.6 -3.54459 | CGAAGGCCCGCCAAA CGACCG-CCCCGGCGGCGTCGGACAGCG CGA CGCGATG-GACGCCGTCTGGGTCGGCCG GCCAGACGTCGATCA Rpal_3789 4072152 - 4071781 - | hypothetical protein TERM 2857 4072083 - 4072107 + g 73 -10.8 -3.73224 | gap 1, overlap 4072086 TGAGCAGCTCGTCCT TAGCGTCGCCG TCTG CGGCGACG-TA TTTGATCGAGCGTCC TERM 2858 4072086 - 4072105 + g 80 -15 -3.45027 | overlap 4072083 GCAGCTCGTCCTTAG CGTCGCCG TCTG CGGCGACG TATTTGATCGAGCGT Rpal_3790 4072636 - 4073016 + | hypothetical protein Rpal_3791 4073099 - 4073884 + | hypothetical protein Rpal_3792 4074260 - 4073916 - | hypothetical protein Rpal_3793 4074742 - 4074257 - | VRR-NUC domain protein Rpal_3794 4075620 - 4074742 - | metallophosphoesterase Rpal_3795 4075975 - 4075610 - | hypothetical protein TERM 2859 4075890 - 4075909 + g 77 -3.6 -4.72272 | gap 1 AGTTCGTTCTGGATG TCCAACTTG ATG CGAG-TGGA TTTTTCGTGAGCGCA Rpal_3796 4076122 - 4076439 + | hypothetical protein Rpal_3797 4076917 - 4076411 - | hypothetical protein Rpal_3798 4077035 - 4077343 + | hypothetical protein Rpal_3799 4077327 - 4077614 + | hypothetical protein Rpal_3800 4077614 - 4078201 + | hypothetical protein Rpal_3801 4078185 - 4078844 + | hypothetical protein Rpal_3802 4082080 - 4079396 - | type III restriction protein res subunit TERM 2860 4080387 - 4080400 + g 85 -5.2 -5.06414 | opp_overlap 4080387 ACCTTCGCAACAGTA GCCG CAACAT CGGC TTTTTGTTCGGAAAG Rpal_3803 4083780 - 4082080 - | Site-specific DNA-methyltransferase (adenine-specific) Rpal_3804 4086662 - 4083777 - | SNF2-related protein Rpal_3805 4087240 - 4086788 - | hypothetical protein TERM 2861 4087735 - 4087748 + H 78 -3.1 -5.01823 | gap 1, overlap 4087735 4087736 GGGCGCTGAACTGCA G-CGAG AGA CTCGAC TTTTGTTCTTCTTAT Rpal_3806 4087804 - 4088181 + | hypothetical protein Rpal_3807 4088192 - 4088641 + | hypothetical protein TERM 2862 4088729 - 4088743 + GF 86 -8.5 -4.58395 | opp_overlap 4088715 ACGTCGGCAACCTCG CGCCG ATGCC CGGCG TTTTTCCGGACTACA TERM 2863 4089087 - 4089036 - gf 71 -9.6 -3.73783 | gap 4, opp_overlap 4089037, overlap 4089037 CAGTGAATTCAACAA GGCCGAGGGCGGCGACATCTGGTTCG CGCT CGA-CGAGA-GCCGCC-CCCTCG-CC TGCTTCGCCGGCATC Rpal_3808 4088641 - 4089381 + | protein of unknown function DUF159 TERM 2864 4090563 - 4090549 - gT 72 -7 -4.21439 | opp_overlap 4090549 4090550, overlap 4090550 CAACTCGAACAGAAA GGGCGC CTC GCGCAC GGCGCGCCATTTGGA Rpal_3809 4089353 - 4090591 + | DNA-directed DNA polymerase TERM 2865 4091166 - 4091146 - T 100 -9 -5.05782 | opp_overlap 4091157 AGGCATGTCAAAAAA CATCCGGA CTATC TCCGGACG CCGTCGATTACTTAC Rpal_3810 4091731 - 4091174 - | hypothetical protein TERM 2866 4091694 - 4091705 + g 72 -5.8 -4.3129 | opp_overlap 4091670, overlap 4091686 ACCTCACGGATCTCT GCGA TCCT TCGC TTTTCGTCGTCCGTC Rpal_3811 4094613 - 4092091 - | hypothetical protein TERM 2867 4093824 - 4093860 + g 70 -6.3 -4.27192 | GCCTGGATCCGACCT TCGGCGTCGCCGCTACG ATG CGCATCGTCATCGCCGA TTTTGATGACCGTTT TERM 2868 4094035 - 4094011 - G 77 -4.2 -4.72272 | opp_overlap 4094011, overlap 4094026 4094028 TCCGCTCATGAAAAA GCGGACCG GAACAGACA CGGTCGGC TTTCCGGAGGCGTCC Rpal_3812 4095419 - 4094973 - | hypothetical protein Rpal_3813 4095502 - 4097526 + | AAA ATPase central domain protein Rpal_3814 4097538 - 4097846 + | hypothetical protein Rpal_3815 4097849 - 4098031 + | hypothetical protein TERM 2869 4098719 - 4098686 - T 71 -10.9 -3.42503 | gap 1, opp_overlap 4098703 GTGCAAGATCGACAA CCCGGCGAGCGGC-GG ATG CCTGCCGCTCATCGCG CCGAGCTTTGAGTGA Rpal_3816 4099521 - 4098748 - | alpha/beta hydrolase fold TERM 2870 4099452 - 4099440 - G 85 -7.7 -4.7373 | TGAGCGCATCAAAAA TCGTG CTC CACGA TCGCCAACTTCCGCC TERM 2871 4100129 - 4100158 + r 82 -14.3 -3.35597 | opp_overlap 4100112, overlap 4100127 4100130 CAATCCGGCTAAGGG GCTGGGCAGAGTG CGTC CGCTCTGCCCAGG TATTTCAGACGTCGA TERM 2872 4100130 - 4100157 + r 86 -17.8 -2.61144 | opp_overlap 4100112, overlap 4100129 4100127 AATCCGGCTAAGGGG CTGGGCAGAGTG CGTC CGCTCTGCCCAG GTATTTCAGACGTCG Rpal_3817 4100795 - 4100163 - | integrase family protein Rpal_3818 4101741 - 4102538 + | transcriptional regulator, Crp/Fnr family Rpal_3819 4103547 - 4102591 - | signal transduction histidine kinase Rpal_3820 4104112 - 4103597 - | hypothetical protein Rpal_3821 4104341 - 4104514 + | protein of unknown function DUF1328 Rpal_3822 4104651 - 4105955 + | hypothetical protein Rpal_3823 4106218 - 4107471 + | sodium/hydrogen exchanger Rpal_3824 4107587 - 4108438 + | cation diffusion facilitator family transporter TERM 2873 4108935 - 4108969 + G 91 -12.2 -4.1964 | gap 1, overlap 4108908 4108904 4108937 GGCGCTGCGATCGTC GCTGCCGCCTGCC TGGTCTTGGT GGCAGGCGGC-GC TTTTGCGATCTTCGG TERM 2874 4109151 - 4109135 - g 71 -12.3 -3.29471 | overlap 4109145 GCTCGATCAGATCAA TCGCGAC AAC GTCGCGA AGCTGACCAAGGTCT TERM 2875 4109222 - 4109208 - g 75 -11.4 -3.75437 | AACGAGCGCACCAAA GGCACC TAT GGTGCC GAGACCACTCCCCTC Rpal_3825 4108566 - 4110968 + | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Rpal_3826 4111724 - 4110972 - | ABC transporter related TERM 2876 4111086 - 4111098 + g 70 -10.5 -3.66288 | opp_overlap 4111081, overlap 4111083 GTCGGACAATTCGAG CGCCG CGA CGGCG TTCTGTTCGACGATG Rpal_3827 4112491 - 4111721 - | ABC transporter related Rpal_3828 4113708 - 4112488 - | inner-membrane translocator Rpal_3829 4114720 - 4113713 - | inner-membrane translocator TERM 2877 4114499 - 4114515 + g 73 -12.3 -3.41602 | CTTGATCTCCATCGG TGACCCC CAA GGGGTCA TTCTGGTCGGATCAA TERM 2878 4114901 - 4114861 - R 91 -18.9 -2.87132 | opp_overlap 4114863, overlap 4114895 TGTCCTCGCGAGACA CGGCCGGTCGGCTGCGCCC CAG GGGCGCAACCGACCGGATT CAATCAGGCTTGCCG TERM 2879 4114863 - 4114899 + r 100 -23.7 -3.06831 | opp_overlap 4114861 4114895 TCCTCGCGAGACACG GCCGGTCGGCTGCGCCC CAG GGGCGCAACCGACCGGA TTCAATCAGGCTTGC Rpal_3830 4116298 - 4114946 - | branched-chain amino acid ABC transporter, periplasmic binding protein, putative TERM 2880 4116356 - 4116332 - H 79 -11.5 -3.95073 | TTCGATACCGACAAA TCTGCACCC CGTGTGC GGGTGCAGA TAGATGGCGCTTCCG TERM 2881 4116445 - 4116460 + H 74 -9 -3.94438 | AACTTCGCTACAGGC GGTACG AAAC CGTACC TATTTTCTTCGGGTC TERM 2882 4116533 - 4116553 + H 90 -13.9 -4.07568 | opp_overlap 4116524 TACAATGCGCAGATT GGGCGGCGC GGG GCGCCGCAC TTTTCGAAAGCACAC TERM 2883 4116582 - 4116601 + H 75 -2.8 -4.83169 | overlap 4116584 ACATACCGAAAAGGG TTAGTACG ACTT CGTACCGA TTTTTGTACCGGCAT Rpal_3831 4116931 - 4117440 + | PRC-barrel domain protein TERM 2884 4117495 - 4117464 - f 93 -18.8 -3.15544 | TCGCACGCGGATCAA TGCTCTGGACGGCA CCCT TGCCGACCAGAGCA GGGTCGCAGCGGCAA Rpal_3832 4117739 - 4118857 + | protein of unknown function UPF0118 Rpal_3833 4118842 - 4119774 + | ribonuclease BN Rpal_3834 4120611 - 4119931 - | Peptidoglycan-binding LysM Rpal_3835 4120902 - 4120774 - | hypothetical protein TERM 2885 4121673 - 4121707 + G 77 -7.7 -4.32034 | gap 1 CCTCGCCGTGTTGTT CGGGGTCGCCG-TCGT GATG GCGGGCGGCGCCACCG TTTTCGTGCTGGTGA Rpal_3836 4121170 - 4123395 + | Alpha,alpha-trehalose-phosphate synthase (UDP-forming) Rpal_3837 4125382 - 4123784 - | ABC transporter related TERM 2886 4124373 - 4124319 - G 71 -14.3 -2.9356 | gap 2 ATCGACAGCGACAGA TCGCTCAGGACCG-GCCAGC-CCGGCT GAT AGCCGACGCTGACACGGTCGAGCGCGA GCACCGTCTTGCCGG Rpal_3838 4125646 - 4126389 + | short-chain dehydrogenase/reductase SDR Rpal_3839 4127042 - 4126410 - | two component transcriptional regulator, LuxR family Rpal_3840 4129318 - 4127039 - | multi-sensor signal transduction histidine kinase TERM 2887 4129405 - 4129372 - R 81 -3.9 -5.00884 | gap 1 AGCCCGGGGAAAAAA GCCCATGAGCAAAACA TAC CATCTTAC-CACGGGC GGTCCCGACGACCAG Rpal_3841 4129990 - 4129463 - | putative cytochrome P460 Rpal_3842 4131101 - 4130058 - | alpha/beta hydrolase fold TERM 2888 4131074 - 4131033 - G 75 -15.3 -2.72344 | gap 3 CGCGATTCCGAACGA CGCCGCC-GC-GAGCG-TGC CGGCC GCAACGCTCAGCAGGCGGCG GCGGGAATGAACAAG Rpal_3844 4133799 - 4134626 + | RNA methyltransferase, TrmH family, group 3 TERM 2889 4134678 - 4134636 - T 100 -20.7 -3.42503 | opp_overlap 4134643, overlap 4134637 4134643 CGCTAAGATCCAGAA CGCAAAACGCCCGCCCGCA TCGGC TGCGGACGGGCGTTTTTCA GCCGGCGAGATGCCG TERM 2890 4134677 - 4134637 - T 100 -22 -2.6518 | opp_overlap 4134643, overlap 4134636 4134643 GCTAAGATCCAGAAC GCAAAACGCCCGCCCGCA TCGGC TGCGGACGGGCGTTTTTC AGCCGGCGAGATGCC TERM 2891 4134671 - 4134643 - T 100 -19.6 -4.32482 | opp_overlap 4134643, overlap 4134637 4134636 ATCCAGAACGCAAAA CGCCCGCCCGCA TCGGC TGCGGACGGGCG TTTTTCAGCCGGCGA TERM 2892 4134643 - 4134671 + T 100 -17.4 -4.56597 | opp_overlap 4134643 4134637 4134636 ATCCAGAACGCAAAA CGCCCGCCCGCA TCGGC TGCGGACGGGCG TTTTTCAGCCGGCGA Rpal_3845 4135199 - 4134699 - | hypothetical protein Rpal_3846 4135730 - 4135257 - | hypothetical protein TERM 2893 4135918 - 4135974 + H 71 -5.9 -4.36914 | gap 3, overlap 4135920 GGTCTTGTCGATCCG CGGCGGCGCTGCTAGCTGT-CTGC-CCG ATGC CGGCGTAGCACAGC-GGTAGTGCAGCGG TTTTGTAAACCGAAG TERM 2894 4136107 - 4136093 - H 95 -11.4 -4.47183 | GATTACGGAAACAAA CCGCGA TCA TCGCGG GCGCGAAACCAGGCA Rpal_3847 4137446 - 4137832 + | hypothetical protein Rpal_3848 4138487 - 4138041 - | BLUF domain protein Rpal_3849 4139218 - 4138637 - | hypothetical protein Rpal_3850 4139638 - 4139850 + | hypothetical protein TERM 2895 4140161 - 4140181 + T 71 -9.6 -3.81488 | opp_overlap 4140158 4140155, overlap 4140162 GGCAGCCAATCACCA CCGGCACC CGCGT GGCGCCGG TTCTGTTTCAGAGCC Rpal_3851 4140342 - 4140229 - | hypothetical protein Rpal_3852 4140625 - 4140500 - | hypothetical protein TERM 2896 4140760 - 4140741 - R 100 -12.1 -4.56597 | opp_overlap 4140730 CGGCTGGCGCAAAAA GGCCGGC GCTGAG GCCGGCC TTGAAGCTGCGATTC Rpal_3853 4141531 - 4140809 - | porin TERM 2897 4141681 - 4141722 + r 74 -5.1 -4.66833 | gap 1, opp_overlap 4141683, overlap 4141683 AGGCCGGCATCAGAT TAGTCGCGGCAGATTGCGAT CCG GTCGGGATCAG-CGCGACAA TTTTTCCAGTTCGGG Rpal_3854 4142148 - 4141711 - | hypothetical protein TERM 2898 4142075 - 4142025 - G 73 -15.2 -2.90075 | overlap 4141996 CGGTGTCGAACGACA TCGAGCCGCCGATCGCGCAGGCGC CGA GCAGCGCCGCGAGCGGCAGCGCGA AGGCGGCGCGAAGCG TERM 2899 4142228 - 4142180 - R 100 -19.6 -3.53012 | gap 1, overlap 4142162 4142181 4142184 4142185 CGCCGGGCGGCGAAA TCAATCGCCCGCCGTGCCGCG AGGGGAAG CGCGGCGCGGCGGGCG-TTGG GACGGCTGAAGATCA TERM 2900 4142227 - 4142181 - R 100 -23.1 -2.71712 | gap 1, overlap 4142162 4142180 4142184 4142185 GCCGGGCGGCGAAAT CAATCGCCCGCCGTGCCGCG AGGGGAAG CGCGGCGCGGCGGGCG-TTG GGACGGCTGAAGATC TERM 2901 4142225 - 4142184 - R 100 -21.5 -3.51232 | overlap 4142162 4142181 4142180 4142185 GGGCGGCGAAATCAA TCGCCCGCCGTGCCGCG AGGGGAAG CGCGGCGCGGCGGGCGT TGGGACGGCTGAAGA TERM 2902 4142224 - 4142185 - R 100 -25 -2.70525 | overlap 4142162 4142184 4142181 4142180 GGCGGCGAAATCAAT CGCCCGCCGTGCCGCG AGGGGAAG CGCGGCGCGGCGGGCG TTGGGACGGCTGAAG Rpal_3855 4142537 - 4142241 - | hypothetical protein Rpal_3856 4142844 - 4143668 + | NAD(+) kinase TERM 2903 4143946 - 4143931 - g 73 -6 -4.41895 | opp_overlap 4143930 4143931, overlap 4143918 AAGGCGCAACCAAAA CCGGCG GCGG CGACGG CTTTGCGGACGTCTG Rpal_3857 4143765 - 4146686 + | hypothetical protein TERM 2904 4146770 - 4146737 - T 84 -17.5 -2.79796 | gap 1 CCCCATGTTACGAGA TTCCGGGTTCGCGAGC TTT GCTCGCGC-CCCGGAA TGACGTGGGGAGAGG Rpal_3858 4147548 - 4146844 - | short-chain dehydrogenase/reductase SDR TERM 2905 4147283 - 4147304 + g 72 -13.7 -3.01791 | gap 1 ATCTCGAGGATCGGC GCGCGCGGCC CGT GGCCG-GCGC TGTTGACCAGCACGT Rpal_3859 4147988 - 4147812 - | hypothetical protein Rpal_3860 4148536 - 4148351 - | hypothetical protein TERM 2906 4149061 - 4149042 - g 82 -11.4 -4.11216 | gap 1, opp_overlap 4149044 CGCGCATTCGGAAAA GCGCC-GCG TGA CGCTGGCGC GCGATGCCGGCGTCA Rpal_3861 4148752 - 4149297 + | response regulator receiver protein Rpal_3862 4149315 - 4149905 + | putative CheA signal transduction histidine kinase Rpal_3863 4151361 - 4150192 - | hypothetical protein Rpal_3864 4151802 - 4152587 + | binding-protein-dependent transport systems inner membrane component Rpal_3865 4152623 - 4153615 + | ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Rpal_3866 4153612 - 4154448 + | ABC transporter related TERM 2907 4154475 - 4154446 - f 85 -9.9 -4.26351 | gap 1, overlap 4154449 CAGGAAGTGAAGAAA TAACGGGCGCCGGC TGA GCCGG-GCCCGAAA GATCCGAACCACCCC TERM 2908 4154472 - 4154449 - f 100 -16 -4.2416 | gap 1, overlap 4154446 GAAGTGAAGAAATAA CGGGCGCCGGC TGA GCCGG-GCCCG AAAGATCCGAACCAC Rpal_3867 4154509 - 4156182 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 2909 4156243 - 4156211 - f 82 -11.2 -4.03234 | gap 1, overlap 4156216 CTGTCCGGACACAAA CGGAA-GGTCGGCGC ATCG GCGCCGGCCGTGCCG GGGAGACGGCAGCGG TERM 2910 4156237 - 4156216 - f 74 -12.9 -3.35695 | overlap 4156211 CGGACACAAACGGAA GGTCGGCGC ATCG GCGCCGGCC GTGCCGGGGAGACGG TERM 2911 4156563 - 4156596 + G 74 -5.1 -4.52589 | overlap 4156544 4156565 CGATGCCGGCGGCGC GGTGCGGATCGCCGC GATG GAGGGGATCGGCAGC TTTTATCTCACGCGC Rpal_3868 4156261 - 4157208 + | transcriptional regulator, LysR family Rpal_3869 4158255 - 4157215 - | hypothetical protein TERM 2912 4158950 - 4158937 - g 77 -5.2 -4.59414 | overlap 4158939 CTACAACAAGGAAAA GGGC TCCAGC GCCC AGGGCAGCAAGCAGC Rpal_3870 4158452 - 4159159 + | hypothetical protein Rpal_3871 4159624 - 4159169 - | Phosphoribosyl-AMP cyclohydrolase Rpal_3872 4160342 - 4159653 - | GTP cyclohydrolase I Rpal_3873 4160610 - 4161062 + | nitrogen-fixing NifU domain protein TERM 2913 4161199 - 4161149 - T 71 -8.9 -3.83226 | gap 1, opp_overlap 4161111 4161185, overlap 4161150 4161195 AACGACGCACAACAA TCTCGGGATTCCGGGTTCGCTCGC TGTC GCGAGCGC-CCCGGAATGACGACC GGGTCGTGTCGGCGG Rpal_3874 4162107 - 4161217 - | hypothetical protein Rpal_3875 4162348 - 4162737 + | protein of unknown function DUF37 Rpal_3876 4163497 - 4162724 - | conserved hypothetical protein; putative signal peptide Rpal_3877 4164833 - 4163580 - | Arsenical pump membrane protein TERM 2914 4164450 - 4164412 - G 72 -7.3 -4.29106 | gap 1, overlap 4164414 GCGCAGACGAACAAA TACGGCAGCG-GTGCAGC GCCC GCCGCGCGCGTCGCCGCA TAGACCGCCGGCGTC TERM 2915 4164560 - 4164540 - G 70 -10.4 -3.75738 | gap 1 CACCAGCAGGAACAA GCGCTGCGG CGAA CCGC-GCGC GTGCTCGACGGCGTA Rpal_3878 4165111 - 4165320 + | cold-shock DNA-binding domain protein TERM 2916 4165364 - 4165390 + F 93 -14.5 -4.08216 | GAAACGGCAGATGGG CCCGTTCGATC TTAGC GATCGAGCGGG TTTTGCCGCGCGTCC Rpal_3879 4165421 - 4165669 + | hypothetical protein TERM 2917 4165759 - 4165776 + G 75 -9.1 -4.13767 | gap 1, opp_overlap 4165759, overlap 4165759 GCGACATTCACAGCA CC-GGCGG TCG CCGCCAGG TTTTCGGCTCGCGCG Rpal_3880 4165713 - 4165910 + | hypothetical protein Rpal_3881 4166322 - 4165900 - | hypothetical protein Rpal_3882 4166959 - 4166327 - | transcriptional regulator, TetR family Rpal_3883 4167056 - 4167706 + | O-methyltransferase family 3 Rpal_3885 4169216 - 4168068 - | major facilitator superfamily MFS_1 Rpal_3884 4167851 - 4168132 + | hypothetical protein Rpal_3886 4169409 - 4171472 + | threonyl-tRNA synthetase TERM 2918 4171619 - 4171630 + T 86 -7.2 -4.7254 | overlap 4171600 4171599 TGCCCGGGCTGGTCC CGGG CATT CCCG TTTTTGGTAGGCCGT Rpal_3887 4172332 - 4171754 - | hypothetical protein Rpal_3888 4172669 - 4173178 + | nitroreductase Rpal_3889 4175104 - 4173230 - | Amidohydrolase 3 Rpal_3890 4177673 - 4175199 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpal_3891 4178945 - 4177884 - | hypothetical protein TERM 2919 4178895 - 4178838 - G 83 -14.8 -3.62597 | overlap 4178885 CCGATCGCTGAACAA TTGCGCGGCGGCGGGCTG-AGCGAGCGC CAGC GCGCACGCCACAACCAGC-GCCGCACGA GCGGTCCCCCACGGC TERM 2920 4179032 - 4179048 + H 72 -7.3 -4.15565 | GTATGGGCGTGCTGT TCGTGAT TGC GTCACGA TTTTCCCCTAGTCCC Rpal_3892 4179175 - 4180206 + | Patatin Rpal_3893 4180441 - 4180226 - | putative membrane protein of unknown function Rpal_3894 4181553 - 4180438 - | PepSY-associated TM helix domain protein TERM 2921 4180540 - 4180521 - G 72 -7.2 -4.2558 | gap 1 GACCGCTGATCAAAA CGACGATCG TCG CGAT-GTCG AGCAGCGCCCAGATG TERM 2922 4181146 - 4181128 - G 70 -6.6 -4.26351 | overlap 4181130 CATGAAGCCAAGAAA CAGCGTGC CCG GCACGCCC CCGAAAAGGTCGAGA TERM 2923 4181144 - 4181130 - G 75 -11.4 -3.72494 | overlap 4181128 TGAAGCCAAGAAACA GCGTGC CCG GCACGC CCCCGAAAAGGTCGA TERM 2924 4181538 - 4181566 + g 85 -13.1 -4.13767 | opp_overlap 4181538 4181533, overlap 4181539 ACACCCACAATCGAA TGGCACGCCGC GTCATCG GCGGCGTGCCC TTTTCAGGTCGAACG TERM 2925 4181566 - 4181538 - G 73 -13.1 -3.24513 | opp_overlap 4181538 4181539, overlap 4181533 ACACCCACAATCGAA TGGCACGCCGC GTCATCG GCGGCGTGCCC TTTTCAGGTCGAACG TERM 2926 4181539 - 4181565 + g 81 -16.6 -3.08046 | opp_overlap 4181538 4181533, overlap 4181538 CACCCACAATCGAAT GGCACGCCGC GTCATCG GCGGCGTGCC CTTTTCAGGTCGAAC Rpal_3895 4183843 - 4181582 - | TonB-dependent siderophore receptor TERM 2927 4183911 - 4183889 - H 81 -7.6 -4.41348 | overlap 4183885 4183891 CGGGCGGGAAATAAA CGGGACGGGA CCG TCCTGTCCAG ACAGATTGCCAAGCG TERM 2928 4184456 - 4184481 + G 77 -11.1 -3.85698 | gap 1, opp_overlap 4184452 4184451 AGGCGCAGAAGGCCG GCGC-CCTCGCC CGC GGCGACGTGCGC TTTCTCGCGAGCCAG Rpal_3896 4183993 - 4184628 + | transcriptional regulator, TetR family Rpal_3897 4185078 - 4184650 - | CBS domain containing protein Rpal_3898 4186086 - 4185316 - | Rhomboid family protein TERM 2929 4186233 - 4186209 - H 100 -14.3 -4.3208 | CCCCAGAACGGAAAA GGGAGGGCCCT GAG AAAGCCCTCCC CCGGTCCGTGCCGGC Rpal_3899 4186571 - 4187140 + | protein of unknown function DUF1457 Rpal_3900 4187874 - 4187110 - | putative transcriptional regulator, Crp/Fnr family TERM 2930 4188342 - 4188363 + G 85 -13.7 -4.08767 | opp_overlap 4188340 ACCCCAAAAGCCAGC CGGCGACGC TCGA GCGTCGTCG TTTTCAGCGGGTGAA Rpal_3901 4188314 - 4188925 + | type IV pilus assembly PilZ Rpal_3902 4189257 - 4189877 + | transglutaminase family protein cysteine peptidase BTLCP TERM 2931 4189944 - 4189982 + T 75 -12.4 -3.57561 | gap 1, overlap 4189944 CGTCCCAGACCGGAT CGTG-CGCGGCCAGCCT CCCCCA AGGCTGGCCGCACCCCG TTTGGAGCCTTAGAA Rpal_3903 4192369 - 4192091 - | hypothetical protein Rpal_3904 4192626 - 4192369 - | hypothetical protein Rpal_3905 4193204 - 4193082 - | hypothetical protein Rpal_3906 4193646 - 4194314 + | hypothetical protein Rpal_3907 4194669 - 4194884 + | hypothetical protein TERM 2932 4194883 - 4194862 - T 93 -2.3 -5.54894 | gap 1, opp_overlap 4194867, overlap 4194867 AACTGATGAAAAAAA CACAAGAACG GCG CGATCTT-TG ATAACGAGATTGGAA Rpal_3908 4196842 - 4196255 - | transcriptional regulator, MarR family TERM 2933 4196902 - 4196930 + H 79 -15.3 -2.87463 | opp_overlap 4196908 TCGACTCGGACGGAC CCGAAATCGCGGC GCA GCCGTGATTGCGG TATGTACCCAAACTT Rpal_3909 4197367 - 4198866 + | porin TERM 2934 4198898 - 4198931 + F 100 -9.7 -5.41746 | gap 2, opp_overlap 4198891 4198902, overlap 4198902 CTTGTAAACCTCCAA GGA--ACCTCCGGCG ATGCCC CGCCGGAGGTTTTCC TTTTTTTGGAGGCTT TERM 2935 4198925 - 4198902 - f 88 -16 -3.36581 | opp_overlap 4198898 4198902, overlap 4198891 TAAACCTCCAAGGAA CCTCCGGCGA TGCC CCGCCGGAGG TTTTCCTTTTTTTGG TERM 2936 4198902 - 4198925 + F 100 -15.3 -4.94243 | opp_overlap 4198891 4198902, overlap 4198898 TAAACCTCCAAGGAA CCTCCGGCG ATGCCC CGCCGGAGG TTTTCCTTTTTTTGG TERM 2937 4199231 - 4199261 + F 83 -14.7 -3.48276 | gap 1, opp_overlap 4199211 GCCGATCGACTTGAG GGAC-GCGCTGCGC AAGA GCGCAGCGCCGGCC TTGTATCGCAAAGGC Rpal_3911 4199302 - 4199469 + | hypothetical protein Rpal_3912 4200029 - 4199499 - | hypothetical protein Rpal_3913 4200421 - 4200089 - | hypothetical protein Rpal_3914 4200588 - 4201319 + | conserved hypothetical protein; putative exported protein Rpal_3915 4201554 - 4201336 - | hypothetical protein Rpal_3916 4202550 - 4201723 - | serine O-acetyltransferase TERM 2938 4202632 - 4202580 - R 76 -9 -4.07568 | gap 1, opp_overlap 4202604 4202605, overlap 4202587 4202590 TCGGGTCGCTCAAAA CACTATAC-CACGTCAGCCGCGGCG CTGT CGCGGCGCCTGACGTGTGCGCCGCG GCACTTTCCAAGACT TERM 2939 4202624 - 4202587 - R 81 -15.5 -3.01785 | opp_overlap 4202604 4202605, overlap 4202580 4202590 GCTCAAAACACTATA CCACGTCAGCCGCGGCG CTGT CGCGGCGCCTGACGTGT GCGCCGCGGCACTTT TERM 2940 4202621 - 4202590 - R 78 -15.8 -2.72761 | opp_overlap 4202604 4202605, overlap 4202587 4202580 CAAAACACTATACCA CGTCAGCCGCGGCG CTGT CGCGGCGCCTGACG TGTGCGCCGCGGCAC TERM 2941 4202604 - 4202636 + r 70 -9.8 -3.54919 | opp_overlap 4202590 4202587 4202580, overlap 4202605 ACGTCAGCCGCGGCG CTGTCGCGGCGC CTGACGTGT GCGCCGCGGCAC TTTCCAAGACTCGTT Rpal_3917 4203526 - 4202771 - | alpha/beta hydrolase fold Rpal_3918 4204844 - 4203696 - | putative exported protein of unknown function Rpal_3919 4205050 - 4205295 + | hypothetical protein TERM 2942 4205907 - 4205923 + G 70 -10.1 -3.64703 | overlap 4205918 GCCGGATGGGGAGAG GCTGCGC GGA GTGCAGC TTTGGCTGGGGCCGG Rpal_3920 4205314 - 4206507 + | monooxygenase FAD-binding Rpal_3921 4206952 - 4206548 - | conserved hypothetical protein; putative signal peptide TERM 2943 4207019 - 4207044 + H 76 -6.7 -4.41616 | overlap 4207023 TGACCGCAGTGTGGC CGGCGGTGGCG TCCC CGCAACCCTCG TTTGTTTCGACGCGT Rpal_3922 4207116 - 4207544 + | UspA domain protein Rpal_3923 4207641 - 4208501 + | protein of unknown function DUF23 Rpal_3924 4209018 - 4208560 - | DNA mismatch endonuclease Vsr TERM 2944 4208856 - 4208838 - G 77 -3 -4.88067 | overlap 4208821 4208841 AGCCATTTACAAAAA TAACGGCA CGG TGCCGCCG CAACACAATATCTGG TERM 2945 4208853 - 4208841 - G 84 -9.1 -4.5448 | overlap 4208821 4208838 CATTTACAAAAATAA CGGCA CGG TGCCG CCGCAACACAATATC Rpal_3925 4210763 - 4209018 - | protein of unknown function DUF87 Rpal_3926 4212726 - 4210777 - | hypothetical protein Rpal_3927 4214225 - 4212723 - | DNA-cytosine methyltransferase TERM 2946 4212900 - 4212882 - G 73 -5.9 -4.31164 | overlap 4212883 4212894 CCCAGAGAATACAAA GCCGTCG GGAAA CGACTGC AGACGCGCCGCTTCC TERM 2947 4213227 - 4213214 - G 89 -3.7 -5.31456 | GCAAGCGAGAAAAAA GCTCG TAGT CGCGC GGCAGATAACGAATT TERM 2948 4213644 - 4213629 - G 75 -3.2 -4.74132 | overlap 4213631 4213632 ATACGCGATCAAAAA CATGCG CTCC CGCATC TGCGGTACGCCATAG TERM 2949 4214832 - 4214808 - H 71 -12.7 -3.01712 | opp_overlap 4214814 4214820 TTGTCGGCTGGAATA CGCACGGCGCC TGC GGCGTCGGGCG CGGCGATCTCTCTCA TERM 2950 4215496 - 4215520 + G 80 -9.2 -4.16842 | gap 1, opp_overlap 4215458 4215459, overlap 4215497 AGATCGCGATCCGGC CCGGC-CCGGC GATG GCCGGCGCCGA TTTCTTCGACATCAC Rpal_3928 4214967 - 4216154 + | amidohydrolase TERM 2951 4216487 - 4216522 + G 77 -13.8 -3.48276 | overlap 4216488 CGGCGACGGCCGATG CGCCGCCCGCCGCGCG GCTG CGCGAGGCCGGTGGCA TTCTGTGGAGCAAGA TERM 2952 4216488 - 4216521 + G 80 -17.3 -2.68823 | overlap 4216487 GGCGACGGCCGATGC GCCGCCCGCCGCGCG GCTG CGCGAGGCCGGTGGC ATTCTGTGGAGCAAG TERM 2953 4217300 - 4217326 + G 73 -12.2 -3.37612 | TGATCTCGCCGGTGG CGCCGGTGGTGA GCT TCGCCGCCGACG TTGCTTCGCCTTGGA Rpal_3929 4216147 - 4217562 + | Amidase TERM 2954 4218369 - 4218337 - g 73 -9.7 -3.90112 | overlap 4218338 4218349 CGCTCGCCAAGGAAA TCGCCGCCAAAACCG CGC CGGTGTCGGTGGCGC TGATCCGGCAGATGA TERM 2955 4218513 - 4218503 - g 72 -8.2 -4.07568 | overlap 4218480 CTCGTTCCTGGAAAA GCGC CCG GCGC AGTTCAAGAACAAGG Rpal_3930 4217694 - 4218584 + | Enoyl-CoA hydratase/isomerase Rpal_3932 4220401 - 4219412 - | fumarylacetoacetate (FAA) hydrolase TERM 2956 4220473 - 4220463 - H 100 -8.2 -5.30686 | overlap 4220464 AATATCGATAAAAAA GCCG ACC CGGC TGCCGCGTGCGAAAA Rpal_3933 4220529 - 4221239 + | transcriptional regulator, GntR family Rpal_3934 4222985 - 4221264 - | AMP-dependent synthetase and ligase Rpal_3935 4224033 - 4223146 - | 3-hydroxyisobutyrate dehydrogenase Rpal_3936 4225140 - 4224067 - | Enoyl-CoA hydratase/isomerase TERM 2957 4224729 - 4224706 - G 73 -3.8 -4.59109 | gap 1, opp_overlap 4224707, overlap 4224707 4224708 GACATCGGGGAAAAA GCCGATGCCGA CTT CCGGCATTG-C GATCTTGGTCTTGTC Rpal_3937 4226294 - 4225137 - | acyl-CoA dehydrogenase domain protein Rpal_3938 4226711 - 4226316 - | PilT protein domain protein Rpal_3939 4226940 - 4226713 - | hypothetical protein Rpal_3940 4228486 - 4226990 - | methylmalonate-semialdehyde dehydrogenase TERM 2958 4228668 - 4228688 + r 78 -6.8 -4.66833 | gap 1, overlap 4228658 4228669 TGCACGGCCGATCGT G-CCGCGGC CTTG GCTGCGGTC TTTTTCGGCTTGGCC TERM 2959 4228669 - 4228686 + r 76 -10.5 -3.94933 | overlap 4228658 4228668 GCACGGCCGATCGTG CCGCGGC CTTG GCTGCGG TCTTTTTCGGCTTGG Rpal_3941 4229314 - 4228646 - | transcriptional regulator, TetR family Rpal_3942 4229963 - 4229388 - | thioesterase superfamily protein Rpal_3943 4230106 - 4230876 + | Enoyl-CoA hydratase/isomerase Rpal_3944 4231001 - 4232287 + | major facilitator superfamily MFS_1 Rpal_3945 4233895 - 4232336 - | Propionyl-CoA carboxylase TERM 2960 4233440 - 4233466 + gT 74 -9.3 -3.85092 | CCAGCGGGTGCCATC GACGCCGCCGG GCAGA TTGGCGGCGCC TTTGCTCTCGATCGT Rpal_3946 4234769 - 4233804 - | transcriptional regulator, IclR family TERM 2961 4234190 - 4234145 - GH 71 -13.3 -3.01924 | gap 1, opp_overlap 4234165 4234168, overlap 4234147 TATGCGGGCTGAACA GACCGCACGACACCACG-TAGC CGC GCTCGCGCAGCATCGCGCGGTC GGTTTCGATCCGCTC Rpal_3947 4235049 - 4235270 + | biotin/lipoyl attachment domain-containing protein TERM 2962 4235438 - 4235419 - f 79 -8.6 -4.30719 | gap 1, opp_overlap 4235423, overlap 4235423 TCGCCCGATAACAAA GCAATCCGC AAA GCGGA-TGC GTTCGGGAGAGAAAC TERM 2963 4235435 - 4235423 - f 71 -9.1 -3.72784 | opp_overlap 4235423, overlap 4235419 CCGATAACAAAGCAA TCCGC AAA GCGGA TGCGTTCGGGAGAGA Rpal_3948 4235454 - 4236614 + | TRAP transporter solute receptor, TAXI family TERM 2964 4236772 - 4236795 + G 89 -18.2 -3.47573 | TCTGGCGCTGGGCAC TGGTGGCCGC CGCT GCGGCCACCA TTCTGCTGTGCATCA TERM 2965 4238656 - 4238686 + G 74 -12.6 -3.55563 | gap 1, overlap 4238657 4238667 TGGCGATCGCGTTGC TGCTGGTCCGCCG GGGCGA CGGCGG-CCAGCG TTTGGCGCGTCCCGT Rpal_3949 4236642 - 4238708 + | TRAP transporter, 4TM/12TM fusion protein TERM 2966 4238708 - 4238760 + F 81 -14.1 -3.54408 | gap 1, overlap 4238706 4238711 4238713 GCGTCCCGTCGTGTA GC-ACTTCCCGCTGCGGCGCCGGT ATCAGC ACCGGCGCCGCAGCGGCATCTTGG TTGATTTCCCTAGAC TERM 2967 4238711 - 4238756 + F 100 -20.4 -3.50532 | overlap 4238708 4238706 4238713 TCCCGTCGTGTAGCA CTTCCCGCTGCGGCGCCGGT ATCAGC ACCGGCGCCGCAGCGGCATC TTGGTTGATTTCCCT TERM 2968 4238713 - 4238754 + F 100 -27.4 -3.31914 | overlap 4238711 4238708 4238706 CCGTCGTGTAGCACT TCCCGCTGCGGCGCCGGT ATCAGC ACCGGCGCCGCAGCGGCA TCTTGGTTGATTTCC Rpal_3950 4238829 - 4239383 + | hypothetical protein TERM 2969 4239403 - 4239428 + T 93 -14.7 -3.99324 | CCGCGACGTCCGAGC GCGGCGGGC GCTGAATG GCCCGCCGC TTTCTGATGATCAGC Rpal_3951 4239804 - 4239439 - | hypothetical protein Rpal_3952 4240937 - 4239801 - | putative thiolase Rpal_3953 4242321 - 4241119 - | L-carnitine dehydratase/bile acid-inducible protein F Rpal_3954 4242529 - 4243410 + | dehydratase Rpal_3955 4245156 - 4243630 - | AMP-dependent synthetase and ligase TERM 2970 4245007 - 4244986 - G 80 -13.7 -3.62775 | gap 1, overlap 4244987 ATTATGCGCGAACAA CGCGACCCGG TCG CCGGG-CGCG ATGCCGTAATCGCGC Rpal_3956 4246347 - 4245178 - | Thiolase Rpal_3957 4247591 - 4246605 - | NAD-dependent epimerase/dehydratase Rpal_3958 4248694 - 4247768 - | binding-protein-dependent transport systems inner membrane component TERM 2971 4248309 - 4248269 - G 75 -4.6 -4.65838 | gap 1, overlap 4248272 4248303 CAGATAGGCCAAAAA GATTGCGCCGCCCACGGTG TCGG CGCCGCGGA-AACGCAGTC GCACGATCGCGTAGG Rpal_3959 4249634 - 4248687 - | binding-protein-dependent transport systems inner membrane component TERM 2972 4249827 - 4249855 + r 81 -10.2 -4.14392 | opp_overlap 4249830, overlap 4249830 GCCTTTGTCGGCTGA GAAGGGTCGGCG CATGT CACCGCCCCTTC TTTTCCCCGTTACGC Rpal_3960 4251190 - 4249865 - | extracellular solute-binding protein family 1 TERM 2973 4250039 - 4250057 + g 70 -2.3 -4.62069 | overlap 4250041 CGAGGCGGTGCGGGC GACGTCG CGATA CGGCGTG TTTTTCGGGTCCGCG Rpal_3961 4252331 - 4251267 - | ABC transporter related Rpal_3962 4252568 - 4254376 + | Dihydroxy-acid dehydratase Rpal_3963 4254558 - 4255292 + | short-chain dehydrogenase/reductase SDR Rpal_3964 4255375 - 4256124 + | short-chain dehydrogenase/reductase SDR Rpal_3965 4257244 - 4256450 - | TonB family protein Rpal_3966 4257798 - 4257349 - | TonB system transport protein ExbD Rpal_3967 4258713 - 4257802 - | tonB-system energizer ExbB TERM 2974 4257897 - 4257865 - G 78 -14.7 -3.25942 | ATCGCGCGACAGCAA CCGGCCGGCGGCGCC GGA GGCGCGGGCGACCAG TTCGAGATACAGCTT Rpal_3968 4259399 - 4258710 - | 2OG-Fe(II) oxygenase TERM 2975 4258895 - 4258879 - G 89 -2.9 -5.28176 | overlap 4258881 4258882 TGCAGCCAGAAAAAA GACGC CACCCGT GCGCC GCGCGTGACCGGAGT Rpal_3969 4261806 - 4259425 - | TonB-dependent siderophore receptor TERM 2976 4261327 - 4261351 + g 100 -17.9 -3.9644 | ACCGGCGGTCGAGCG CGCGACTTCGC GCA GCGAGGTCGCG TTCTTGTCTTCGAGC Rpal_3970 4262332 - 4262090 - | hypothetical protein TERM 2977 4263389 - 4263362 - g 73 -14.2 -3.1247 | gap 1, opp_overlap 4263350 4263348 4263382 ATCGCGCAGATCGAA CCGATCGCGGTGA TCT TCACCGCG-CCGG AAGAGCGCGTGTTCG Rpal_3971 4262669 - 4263892 + | efflux transporter, RND family, MFP subunit Rpal_3972 4263895 - 4267032 + | acriflavin resistance protein Rpal_3973 4267479 - 4267075 - | PilT protein domain protein Rpal_3974 4267730 - 4267476 - | transcriptional regulator/antitoxin, MazE TERM 2978 4268382 - 4268365 - g 80 -9.1 -4.17048 | gap 1 CGGCCTCGAAAAGAA GGC-CGGC ATT GCCGCGCC CGAACCATGGCTGTT Rpal_3975 4268318 - 4269514 + | phage portal protein, HK97 family Rpal_3976 4269511 - 4270215 + | putative phage HK022 GP20-related protein Rpal_3977 4270215 - 4270541 + | hypothetical protein Rpal_3978 4270538 - 4270735 + | hypothetical protein TERM 2979 4270767 - 4270755 - g 75 -9.1 -4.0492 | opp_overlap 4270764 CAAGGTTGAGATAAA GGCGA CGC TCGCC GTCGACGATGCCGGC Rpal_3979 4270735 - 4271232 + | phage prohead protease, HK97 family Rpal_3980 4271235 - 4272383 + | phage major capsid protein, HK97 family Rpal_3981 4272389 - 4272958 + | hypothetical protein Rpal_3982 4272949 - 4273296 + | HNH endonuclease Rpal_3983 4273298 - 4273720 + | hypothetical protein Rpal_3984 4273735 - 4274016 + | hypothetical protein Rpal_3985 4274018 - 4274434 + | hypothetical protein Rpal_3986 4274434 - 4274754 + | phage head-tail adaptor Rpal_3987 4274733 - 4275137 + | hypothetical protein Rpal_3988 4275134 - 4275511 + | phage terminase, small subunit, , P27 family TERM 2980 4275535 - 4275571 + G 73 -10.7 -3.73953 | TCGACGGCTCACCGA TCGACGACCCGCTCGGC TAT GGCGAGCGCGCCGTCAA TTTCCTGCGCCTACT TERM 2981 4276064 - 4276046 - g 75 -11.6 -3.64487 | GCACATTTGGAAGAA CGCGGACC TCT GGACCGCG ATCAAGTCGGGCCTG Rpal_3989 4275486 - 4277108 + | Terminase Rpal_3990 4277108 - 4277503 + | phage protein, HK97 gp10 family Rpal_3991 4277500 - 4277832 + | hypothetical protein Rpal_3992 4277832 - 4280048 + | hypothetical protein TERM 2982 4280133 - 4280098 - f 81 -10.4 -4.13014 | opp_overlap 4280102, overlap 4280102 CGGATAGGTCGAAAA TTAAGGCCACCAGCCC GGCG AGACTGGTGGCCTTGG ATCAAGGGAGTGCCC TERM 2983 4280102 - 4280129 + F 71 -12.7 -3.05463 | opp_overlap 4280102 4280098 TAGGTCGAAAATTAA GGCCACCAGCC CGGCGA GACTGGTGGCC TTGGATCAAGGGAGT TERM 2984 4280129 - 4280102 - f 86 -15.6 -3.67622 | opp_overlap 4280102, overlap 4280098 TAGGTCGAAAATTAA GGCCACCAGCCC GGCG AGACTGGTGGCC TTGGATCAAGGGAGT Rpal_3993 4280153 - 4281001 + | hypothetical protein Rpal_3994 4281200 - 4281391 + | hypothetical protein TERM 2985 4281555 - 4281534 - f 74 -10.2 -3.68351 | CTCGGACCACGCAAA CGCGGAAA GCTTCA TTTCCGCG AACGATAAACCGTGT Rpal_3995 4281607 - 4282083 + | hypothetical protein TERM 2986 4282139 - 4282092 - T 70 -12 -3.1855 | gap 1, overlap 4282105 CGCCTGAATATTGAA GCTTGGCAGC-GAATGCGCGGGC ATC ACCCGCGCATTCGGCAACTAATC CCTCTCAACTCTTCT TERM 2987 4282125 - 4282105 - T 78 -14.7 -3.05715 | overlap 4282092 AAGCTTGGCAGCGAA TGCGCGGGC ATC ACCCGCGCA TTCGGCAACTAATCC Rpal_3996 4283451 - 4282672 - | hypothetical protein Rpal_3997 4285205 - 4283460 - | integrase family protein TERM 2988 4284086 - 4284111 + g 78 -6.1 -4.57569 | gap 1, overlap 4284089 AGATGCGGCGCATCT GATCGGCGCTGT AGG GCAGCACCG-TC TTTTTCCGGCGATCG TERM 2989 4284089 - 4284109 + g 70 -8.9 -3.90316 | overlap 4284086 TGCGGCGCATCTGAT CGGCGCTGT AGG GCAGCACCG TCTTTTTCCGGCGAT Rpal_3998 4285428 - 4285559 + | hypothetical protein Rpal_3999 4286762 - 4285569 - | L-carnitine dehydratase/bile acid-inducible protein F Rpal_4000 4288083 - 4286872 - | Extracellular ligand-binding receptor Rpal_4001 4288931 - 4288317 - | protein of unknown function DUF548 TERM 2990 4288873 - 4288921 + g 72 -11.7 -3.58533 | gap 3, opp_overlap 4288873, overlap 4288874 4288916 4288917 TGGGTGCGGAAGCGA TAGC-CG-ACCGCGCC-GCCGACG AAAT CGACGGCAGGCGCGGTCCGGGCCG TTTCGGCCATTGTGC Rpal_4002 4290442 - 4288937 - | protease Do TERM 2991 4290498 - 4290476 - R 76 -6.3 -4.41348 | gap 1, overlap 4290493 CGTGCGCGAAAGAAA GCGCAGTCGC GTGA AC-ACTGCGC CCGATCCTGGGATCG Rpal_4003 4290857 - 4290657 - | hypothetical protein TERM 2992 4291078 - 4291057 - R 100 -17.3 -4.55128 | opp_overlap 4291052 AGGCCGAAAGCAAAA CGGGCCGCT TGTG AGCGGCCCG TTGCAGTGTCGTGGT Rpal_4004 4292026 - 4291100 - | HflC protein Rpal_4005 4293174 - 4292023 - | HflK protein Rpal_4006 4293861 - 4293319 - | Dihydrofolate reductase TERM 2993 4293575 - 4293550 - G 77 -13.3 -3.53224 | gap 1, opp_overlap 4293548 GATCTCGGTGGCAAA TCGC-CGCAGCG CAT CGCCGCGCGCGA CCTGTTCGGCCGCCG Rpal_4007 4294652 - 4293858 - | Thymidylate synthase Rpal_4008 4295832 - 4294825 - | hypothetical protein Rpal_4009 4297448 - 4295934 - | protein of unknown function DUF112 transmembrane TERM 2994 4296552 - 4296591 + g 77 -10.8 -3.7941 | gap 1 CGCCGCGACGCCTTC GATCGCGCCGCGGCC AAACCGTTTCG GGTCGCG-CGCGATC TTCTTCTCCAGCGTG Rpal_4010 4297959 - 4297459 - | protein of unknown function DUF1468 TERM 2995 4297658 - 4297615 - G 74 -8.1 -4.25074 | gap 1 CAGGAAACTCGAAAA CGT-CGCGATGACGAGGCCG AGCGG CCGAATCGTCACCGCGAACG ACAGGATCGCGAGGC Rpal_4011 4298562 - 4298032 - | Chromate transporter Rpal_4012 4299155 - 4298559 - | Chromate transporter Rpal_4013 4299883 - 4300419 + | protein of unknown function DUF1321 Rpal_4014 4300530 - 4301957 + | fumarate hydratase, class II Rpal_4015 4302222 - 4302410 + | hypothetical protein Rpal_4016 4302407 - 4302685 + | hypothetical protein Rpal_4017 4306530 - 4302706 - | AsmA family protein TERM 2996 4303023 - 4303040 + g 75 -9.1 -4.08394 | gap 1 GAGCACTTGGCTGCG GCGCAGCC TCG GGC-GCGC TTTTGGGCACGGTCT TERM 2997 4303686 - 4303727 + g 75 -14.3 -3.33696 | gap 1 CGCCGCCGGACAGCG CGCCGGCGAGCGCCGAGGCG CTG CGAC-CGCTGCTCGCCAGCG TTCCTTGCAGCGACA TERM 2998 4305900 - 4305871 - G 78 -15.7 -3.18681 | opp_overlap 4305896 CCCGAACCTCACCAA GCCGTCGAGATCG GCCG CGATCCCGCCGGC GCCCTGGTTGATCCC TERM 2999 4306661 - 4306620 - R 76 -15.2 -2.52543 | opp_overlap 4306620 4306622, overlap 4306606 4306626 ACTGTGGCGAACTCA CAGCAACTTCAAGCGGCG GATTCA CGCCGCCCAAAGTGGCTG TGGTTCAAATCCCTT Rpal_4018 4308093 - 4306666 - | FAD linked oxidase domain protein TERM 3000 4308112 - 4308102 - H 75 -3.2 -4.91109 | overlap 4308103 GGCCCACGACAAAAA CTCC TTC GGAA CGGGGCGACCGTGGC TERM 3001 4308414 - 4308436 + G 83 -14.8 -3.68351 | GCGTGAGATCCATCT CGGCGACCCG GTG CGGGTCGCGG TTTACATCGTCGAGG TERM 3002 4308549 - 4308528 - g 72 -8.8 -4.09685 | GGCGACTTCGGAAAA CATGTCGA TGCATG TCGACATG GCGAGCCGCAAAGTG Rpal_4019 4308160 - 4308693 + | conserved hypothetical protein; putative thioesterase superfamily Rpal_4020 4308863 - 4308690 - | protein of unknown function DUF1328 TERM 3003 4308895 - 4308927 + H 75 -12 -3.59979 | gap 1, overlap 4308887 CGCTTCAGGCATCCG CTGGCGGCTGCCTTG TCGG TGAGGC-GCCGCCGG TTTCGACTGCGCCGC TERM 3004 4310088 - 4310041 - g 81 -12.1 -3.79113 | gap 3, overlap 4310044 ATCTCTTCACAAGAA GATG-GATCACCGGGTCTCGCCGC TTC GCGGCG-G-CCCGGTGATGACGTC GAGACGAGTGGCAAC Rpal_4021 4309177 - 4311723 + | UvrD/REP helicase Rpal_4022 4311723 - 4312007 + | protein of unknown function UPF0150 TERM 3005 4312382 - 4312403 + F 75 -4.3 -4.74801 | opp_overlap 4312381 GTCTACGTAGGACAG GCCGGAC AAGGCAAC GCCCGGC TTTTTAATAGGCTTC Rpal_4023 4312791 - 4313072 + | protein of unknown function UPF0150 TERM 3006 4313128 - 4313105 - f 84 -16 -3.05463 | gap 1 ATCGTTGCGAGCCAA CGGGTCGGCGC GCA GCGCCG-CCCG ATGACAGGCGCCGCG Rpal_4024 4313367 - 4314287 + | ABC transporter related Rpal_4025 4314290 - 4315051 + | ABC-2 type transporter TERM 3007 4315076 - 4315098 + T 100 -17.7 -4.00532 | opp_overlap 4315076 GAGTGAAAACAAAAA GGCGCGGCC TGATT GGCCGCGCC TTTGATGTTTCAGGA TERM 3008 4315098 - 4315076 - T 100 -17.7 -5.48213 | opp_overlap 4315076 GAGTGAAAACAAAAA GGCGCGGCC TGATT GGCCGCGCC TTTGATGTTTCAGGA Rpal_4026 4315469 - 4315122 - | hypothetical protein Rpal_4027 4315720 - 4316502 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3009 4316553 - 4316529 - T 93 -20 -3.06796 | opp_overlap 4316529 TTTGATCGGATCGAA CGCGCGGCCC TCCAC GGGCCGCGCG TTTTGTTTTGCCTAG TERM 3010 4316529 - 4316553 + T 100 -20 -5.10933 | opp_overlap 4316529 TTTGATCGGATCGAA CGCGCGGCCC TCCAC GGGCCGCGCG TTTTGTTTTGCCTAG Rpal_4028 4318844 - 4316565 - | hypothetical protein TERM 3011 4318639 - 4318608 - G 70 -10.8 -3.53012 | overlap 4318593 GCGGCGGTCGGCAAA CCGGCTCAGCCCAT GCGC ATAGGCATAGCCGG CCAGCAGCAGCGACT Rpal_4029 4319005 - 4320615 + | FAD dependent oxidoreductase Rpal_4030 4320987 - 4320685 - | hypothetical protein Rpal_4031 4321431 - 4322321 + | ribosomal L11 methyltransferase Rpal_4032 4322540 - 4322346 - | hypothetical protein TERM 3012 4323713 - 4323752 + G 72 -12.9 -3.19157 | gap 3, opp_overlap 4323692 CGAGATCGACGGCAC CCGCG-CGGCGCATCGCCGC GAC GCGGTG--GCGCTGGCGCGG TTCCTGGCGTTCATC Rpal_4033 4322736 - 4324565 + | peptidase M24 TERM 3013 4324886 - 4324851 - f 76 -5.5 -4.59773 | gap 2, overlap 4324852 CCTTATGCCGAAAAA CCGCCTGTTAGCGCTGC CCCG GCAG-GCTA-CAGTCGA GCCACCAGCTCACAT Rpal_4034 4324939 - 4326225 + | drug resistance transporter, Bcr/CflA subfamily TERM 3014 4326308 - 4326365 + T 70 -10.5 -3.59979 | gap 1, opp_overlap 4326316 4326347, overlap 4326312 TTCACATCGAAGCGT CCCAACGAGTCATTCCGGG-GCGCTCAC GAA GTGAGCGAACCCGGAATGACGGGGTCAG TTTCCGATCAGCGCC TERM 3015 4326312 - 4326361 + T 74 -14.3 -2.65354 | gap 1, opp_overlap 4326316 4326347, overlap 4326308 CATCGAAGCGTCCCA ACGAGTCATTCCGGG-GCGCTCAC GAA GTGAGCGAACCCGGAATGACGGGG TCAGTTTCCGATCAG TERM 3016 4326357 - 4326316 - T 100 -22.5 -2.71681 | gap 1, opp_overlap 4326312 4326308, overlap 4326347 GAAGCGTCCCAACGA GTCATTCCGGG-GCGCTCAC GAA GTGAGCGAACCCGGAATGAC GGGGTCAGTTTCCGA Rpal_4035 4328509 - 4326362 - | DNA ligase, NAD-dependent Rpal_4036 4328704 - 4328943 + | hypothetical protein TERM 3017 4329039 - 4329073 + T 83 -16.5 -2.88544 | gap 1 CCCCTCAGCGAGTCA TTCCGGG-GCGCGAGC GCAA GCTCGCGAACCCGGAA TCTCTGCCACTGGGA Rpal_4037 4330786 - 4329098 - | DNA repair protein RecN TERM 3018 4330331 - 4330300 - G 85 -10.2 -4.1891 | gap 1 GCGCCTCAAGAGAAA CGACGTCCTTCTCAA GGC CTGCGAAGG-CGTCG AGCAGCCGGCGATGG Rpal_4038 4331707 - 4330799 - | outer membrane assembly lipoprotein YfiO TERM 3019 4331837 - 4331826 - R 76 -5.8 -4.62069 | TGTTTAGCCGAAAAA GGTG ACTT CACC AACCGGGTACGCAGC Rpal_4039 4332896 - 4331934 - | UDP-3-0-acyl N-acetylglucosamine deacetylase TERM 3020 4332693 - 4332735 + g 71 -12.6 -3.26471 | GTCGCTGTCGCCGAG GACGGTGGCCAGCTCGGTGG CGA CCACCGACTTGGACGTCGCC TTGATCTCGCGATCG TERM 3021 4332803 - 4332784 - G 95 -6.4 -5.35224 | CGGACAAAAAGAAAA CCCGCA TCGATATC TGCGGG TCCCAGCGTCAGATT TERM 3022 4333214 - 4333190 - R 100 -20.7 -5.24129 | GCTTGCCACAAAAAA GGGCCCCGGCG GAT CGCCGAGGCCC TGAGCATCGTCAGAT Rpal_4040 4335018 - 4333243 - | cell division protein FtsZ TERM 3023 4333962 - 4333991 + g 70 -13.6 -3.00525 | overlap 4333956 GCTGATTGTCGGCCC GCAGCTTGGCTG TCAGCT CAGCCAAGCGGC TATCGTTTCCCACCG Rpal_4041 4336434 - 4335112 - | cell division protein FtsA TERM 3024 4336162 - 4336189 + g 70 -12 -3.36492 | gap 1 CTTGGCCATGCGTTC GGCGA-GCGCCAC CGC GTGGCGGATCGCC TTCTCGCATTCGGCC Rpal_4042 4337420 - 4336431 - | Polypeptide-transport-associated domain protein FtsQ-type Rpal_4043 4338728 - 4337739 - | D-alanine--D-alanine ligase TERM 3025 4338795 - 4338770 - R 78 -5.3 -4.68103 | gap 1, opp_overlap 4338772 4338775 4338791 TGAAGTCGAAGAAAA GCTGCTGCGTCC CGC GGACCCGGC-GC GCGGCGTCATTTTGC Rpal_4044 4340166 - 4338838 - | hypothetical protein TERM 3026 4339151 - 4339125 - G 71 -15.1 -2.62184 | opp_overlap 4339121 4339120, overlap 4339101 GCGCCGCGCACACCA GCGCGCCGCCG ATCAG CAGCGACGCGC CGAGCGGCGGCTGCG TERM 3027 4339510 - 4339477 - G 86 -4.6 -5.15167 | gap 2 CACCACGAACAAAAA CACCGCGCTGAAGCCA AAGG TGGCG--AGCACGGTG CGGAGATCGCGGCGT TERM 3028 4340343 - 4340361 + H 74 -10.2 -3.76492 | GCACCGTGATTCCGG CGGTCCCG TGT CGGTACCG TTTCGTGCCGTTGCG Rpal_4045 4340396 - 4341217 + | hypothetical protein Rpal_4046 4342204 - 4341275 - | UDP-N-acetylenolpyruvoylglucosamine reductase Rpal_4047 4343693 - 4342290 - | UDP-N-acetylmuramate/alanine ligase Rpal_4048 4344930 - 4343830 - | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase TERM 3029 4344909 - 4344877 - G 86 -16.2 -3.53012 | overlap 4344879 CGCTTCGGCCGGAAA CAGGTGGCCGCCGG TGCCG CCGGCGGCCAGCAG GATCAAGGGAGCGTC TERM 3030 4344907 - 4344879 - G 86 -17.4 -3.34398 | overlap 4344877 CTTCGGCCGGAAACA GGTGGCCGCCGG TGCCG CCGGCGGCCAGC AGGATCAAGGGAGCG Rpal_4049 4346077 - 4344935 - | cell division protein FtsW Rpal_4050 4347632 - 4346223 - | UDP-N-acetylmuramoylalanine/D-glutamate ligase TERM 3031 4346764 - 4346720 - G 77 -13.6 -3.53444 | opp_overlap 4346733 4346734 GCACCTCTGGCGAAA CGCCGAGCGCCAGCA-CCGCAG CCG CTGCGGCTGC-GGCATTCTGCG CGTTGTGCAGCCCGC TERM 3032 4346734 - 4346756 + g 71 -14.8 -2.60219 | opp_overlap 4346720, overlap 4346733 ACGCCGAGCGCCAGC ACCGCAGCCG CTG CGGCTGCGGC ATTCTGCGCGTTGTG Rpal_4051 4348905 - 4347820 - | phospho-N-acetylmuramoyl-pentapeptide-transferase Rpal_4052 4350355 - 4348916 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase Rpal_4053 4351809 - 4350352 - | UDP-N-acetylmuramyl-tripeptide synthetase Rpal_4054 4353676 - 4351922 - | Peptidoglycan glycosyltransferase TERM 3033 4352536 - 4352552 + g 74 -5.1 -4.56597 | overlap 4352514 4352533 GCTCGGTGCGCAGCC GGTCG AGCTGAC CGACC TTTTTCAGAAACGCC Rpal_4055 4354056 - 4353673 - | hypothetical protein Rpal_4056 4355051 - 4354053 - | S-adenosyl-methyltransferase MraW TERM 3034 4356346 - 4356321 - g 74 -10.5 -3.85698 | gap 1 TTCCGCCCGGAGAAA GTCGACGGCATC GCC GACGCC-TCGAC GCTGGCGACGCTGCA Rpal_4057 4355550 - 4356416 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 3035 4356697 - 4356679 - T 76 -8.8 -4.15106 | overlap 4356691 CAGTAAGGGTGAAAA GGTGCGGT AAG AGCGCACC GCGTCGCCGGCAACG TERM 3036 4356939 - 4356977 + T 70 -10.3 -3.54424 | gap 1, opp_overlap 4356943 4356944 4356947 CCGGCTGATACTTAA TGAATGAAGGGCTCGGCG GAAA CGTCGGGCCCTTCGC-CA TTTCGCAAGGTCACA TERM 3037 4356973 - 4356944 - T 71 -13.5 -2.63164 | opp_overlap 4356939, overlap 4356943 4356947 TGATACTTAATGAAT GAAGGGCTCGGCG GAAA CGTCGGGCCCTTC GCCATTTCGCAAGGT Rpal_4058 4357557 - 4356988 - | filamentation induced by cAMP protein Fic Rpal_4059 4357759 - 4357559 - | hypothetical protein Rpal_4060 4359400 - 4357808 - | drug resistance transporter, EmrB/QacA subfamily Rpal_4061 4360819 - 4359551 - | secretion protein HlyD family protein TERM 3038 4359633 - 4359592 - G 70 -13 -2.99471 | gap 1 CGACGTCGACATAGA CCGACATGCCGGCGCGCAG CAGCC CTTCGCG-CGCCACGTCGG CGGGCACGCGAATCC TERM 3039 4359953 - 4359935 - G 75 -13.8 -3.28924 | opp_overlap 4359929 CAGGCGGTTGGAGAA CACGCCGG TCA CCGGCGCG CGCACATTGGTGAAA Rpal_4062 4361000 - 4361650 + | transcriptional regulator, TetR family Rpal_4063 4362903 - 4361662 - | Extensin family protein TERM 3040 4362454 - 4362511 + g 72 -14.8 -2.70932 | overlap 4362432 4362447 CGCGTTCAGCGACAC CGGCGCTTTGCCGTA-GCCGCCCTGCGG CGCG CCGTAGC-CGGCCTGCGGCTGTGCGCCG TAGTTCGGCGCGCGC TERM 3041 4362588 - 4362602 + g 72 -11.4 -3.53012 | overlap 4362570 4362567 GCGGCTGGCCGCCCG GCCAGC GCG GCTGGC TTTGGCCGGCACCGC TERM 3042 4363005 - 4362972 - R 89 -16.8 -3.50853 | gap 1 TTTTCTTAACCATAA GAGGCGC-GCGGAAC GTCGT GTCCCGCAGCGCCTC ACTGTCGCCGTCGTC Rpal_4064 4364982 - 4363027 - | methyl-accepting chemotaxis sensory transducer Rpal_4065 4365176 - 4365415 + | hypothetical protein Rpal_4066 4368693 - 4365448 - | outer membrane autotransporter barrel domain protein TERM 3043 4368819 - 4368797 - H 76 -7.6 -4.2803 | overlap 4368778 4368798 4368809 TATTGGAACCCAAAA TCGGCGATCA GAC TGGTCGCCGC CGCGAGCGCGTGATA Rpal_4067 4368871 - 4369509 + | HAD-superfamily hydrolase, phosphatase TERM 3044 4370518 - 4370554 + G 73 -13 -3.30124 | gap 2 CAAGCCTTTCGCCAC GGTGCTGGCCGCGCGCGG CTG CCGCGCCCG-CT-GCACC TTCTGCACGGTGCGC Rpal_4068 4369742 - 4371643 + | Radical SAM domain protein Rpal_4069 4371640 - 4372359 + | short-chain dehydrogenase/reductase SDR TERM 3045 4372666 - 4372640 - g 72 -11.4 -3.61715 | overlap 4372641 TATCCTGGTCAACAA CGCCGCGCCGAC GCA GCGGGCGCGGCC GCCATTCGCCGAGCA TERM 3046 4372665 - 4372641 - g 72 -14.9 -2.76815 | overlap 4372640 ATCCTGGTCAACAAC GCCGCGCCGAC GCA GCGGGCGCGGC CGCCATTCGCCGAGC Rpal_4070 4372356 - 4373183 + | short-chain dehydrogenase/reductase SDR Rpal_4071 4374247 - 4373195 - | arsenical-resistance protein TERM 3047 4374188 - 4374161 - G 70 -10.6 -3.54543 | gap 1 ACCGATCGCCTGAAA CGCACCC-GGCAT CAG ATGCCCGAGCGCG ATCCCGACGACGATG Rpal_4072 4374799 - 4374374 - | arsenate reductase Rpal_4073 4375326 - 4374799 - | protein tyrosine phosphatase Rpal_4074 4375675 - 4375319 - | transcriptional regulator, ArsR family Rpal_4075 4375966 - 4375730 - | thiol-disulfide isomerase and thioredoxin Rpal_4076 4377027 - 4375978 - | permease Rpal_4077 4377323 - 4377024 - | transcriptional regulator, ArsR family Rpal_4078 4377489 - 4378274 + | protein of unknown function DUF81 Rpal_4079 4378512 - 4378868 + | transcriptional regulator, MarR family Rpal_4080 4378858 - 4379709 + | Methyltransferase type 11 Rpal_4081 4380128 - 4379928 - | hypothetical protein TERM 3048 4380062 - 4380100 + g 77 -3.7 -4.731 | gap 1, overlap 4380053 4380065 4380067 AGTCCTGGCCGCCGG CGACACGCGCCCGGTC CTGCTTGC GTCCGCGCGCG-GTGG TTTTCTTGGTGGCTT Rpal_4082 4380759 - 4380361 - | hypothetical protein TERM 3049 4380979 - 4380957 - R 100 -20.6 -3.84719 | AGCCCCAAACGCAAA GCGCCCGGCT GAC AGCCGGGCGC TTGAGAGGATCGCGC Rpal_4083 4382458 - 4381010 - | Tryptophanase TERM 3050 4381816 - 4381844 + g 75 -13.9 -3.28712 | GCGGAACGCCGTGCT CCTTGCAGACGTT GCT GACGTCGGCAAGG TTCTGCAGCGACACC Rpal_4084 4382729 - 4383448 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3051 4383510 - 4383485 - f 85 -10.3 -4.28774 | opp_overlap 4383480 4383485 TTAGTTAATTCAAAA CGCGCGGTCTC ATCG GAGGCAGCGCG TTGCTGTTTCAGGCC TERM 3052 4383485 - 4383510 + F 76 -12.5 -3.45571 | opp_overlap 4383485, overlap 4383480 TTAGTTAATTCAAAA CGCGCGGTCTC ATCG GAGGCAGCGCG TTGCTGTTTCAGGCC Rpal_4085 4383638 - 4383976 + | hypothetical protein TERM 3053 4384106 - 4384127 + F 74 -10.1 -3.70076 | gap 1, overlap 4384107 CCCCGGCCTGTATTG TCCC-GGCCG TTC CGGCCCGGGG TTTCGATGCGTTTCG TERM 3054 4384164 - 4384178 + G 77 -10 -3.91084 | TTGGATTGGTAGCAC TCGCGA TCG TCGCGA TTTCATTCACGGTCA Rpal_4086 4384133 - 4385695 + | hypothetical protein TERM 3055 4385734 - 4385769 + T 93 -20.4 -3.02829 | opp_overlap 4385740, overlap 4385761 ACTGATCTCGACACG CACAAACGCCGCCGGG GAAG CCCGGCGGCGTTCGCG TCTTCAGAAGATCTG TERM 3056 4385763 - 4385740 - T 100 -21 -3.95073 | opp_overlap 4385734 4385761 CTCGACACGCACAAA CGCCGCCGGG GAAG CCCGGCGGCG TTCGCGTCTTCAGAA Rpal_4087 4386329 - 4385790 - | PRC-barrel domain protein TERM 3057 4386571 - 4386533 - R 100 -16.9 -5.06414 | gap 1 GGTCCGGAATAAAAA GAGCGCATCCCCTTGCAC CGCA GCG-AAGGGAATGCGCTC GAACCGACGGCGTCA Rpal_4088 4387159 - 4386617 - | hypothetical protein TERM 3058 4387017 - 4387054 + g 70 -11.2 -3.57144 | opp_overlap 4387036, overlap 4387021 AGCGACGAGTCGATG TCTTGCAGCGCCGACG ACAGCG CGTCGGCGTCGCTGGA TTTCACGGTACCGGA Rpal_4089 4387327 - 4388049 + | two component transcriptional regulator, winged helix family Rpal_4090 4388046 - 4389380 + | integral membrane sensor signal transduction histidine kinase Rpal_4091 4390877 - 4389399 - | hypothetical protein Rpal_4092 4391200 - 4392306 + | FAD dependent oxidoreductase Rpal_4093 4392297 - 4392494 + | thiamine biosynthesis protein ThiS Rpal_4094 4392747 - 4393529 + | thiazole biosynthesis family protein Rpal_4095 4393516 - 4394124 + | Thiamine-phosphate diphosphorylase Rpal_4096 4394348 - 4396273 + | thiamine biosynthesis protein ThiC TERM 3059 4396360 - 4396338 - f 71 -12.6 -3.1082 | opp_overlap 4396339 CATCCATCTAAGACA TGGCCGGGCC AAA AGCCCGGCCT TTTAGTTTTACGACG TERM 3060 4396339 - 4396359 + F 100 -15.4 -4.67038 | opp_overlap 4396338 ATCCATCTAAGACAT GGCCGGGC CAAAA GCCCGGCC TTTTAGTTTTACGAC TERM 3061 4396505 - 4396481 - f 79 -8.6 -4.28049 | gap 1, overlap 4396474 CTGAAAATGCGAAAA GCCGCCATTGG TTTC CCAA-GACGGC CTCCGTATTCAGATC Rpal_4097 4396622 - 4397551 + | hypothetical protein TERM 3062 4397596 - 4397577 - f 83 -15 -3.39717 | opp_overlap 4397577, overlap 4397563 AGCCATCAACACGAA GCCCGGCA GCGC TGCCGGGC TTTTCGTTAGCACCT TERM 3063 4397577 - 4397596 + F 100 -15 -4.41047 | opp_overlap 4397577 4397563 AGCCATCAACACGAA GCCCGGCA GCGC TGCCGGGC TTTTCGTTAGCACCT TERM 3064 4398474 - 4398456 - g 77 -5.3 -4.57837 | overlap 4398457 ACACTTGGTCAAAAA CCGACAA ACCAA TTGTCGA CCAGATAAGGTCCGC TERM 3065 4398780 - 4398764 - g 76 -2.2 -4.96848 | GCCGTCATAGAAAAA GCGG AACGACTGG CCGC ATTGCGAGGCCCCGC Rpal_4098 4397819 - 4398862 + | hypothetical protein Rpal_4099 4399413 - 4399015 - | protein of unknown function DUF1486 Rpal_4100 4399836 - 4399603 - | hypothetical protein Rpal_4101 4400487 - 4399957 - | hypothetical protein Rpal_4102 4400813 - 4400475 - | Protein of unknown function DUF1778 TERM 3066 4401117 - 4401127 + G 79 -2.4 -5.06414 | AGGCAGCCGCTCGGC CCTG ACT CCGG TTTTTCTTCCGACGA Rpal_4103 4400991 - 4401770 + | hypothetical protein Rpal_4104 4402464 - 4401952 - | hypothetical protein Rpal_4105 4403238 - 4402774 - | hypothetical protein Rpal_4106 4404448 - 4404732 + | hypothetical protein Rpal_4107 4404894 - 4405082 + | hypothetical protein Rpal_4108 4406392 - 4405100 - | monooxygenase FAD-binding TERM 3067 4406008 - 4406051 + g 83 -15.8 -3.50853 | opp_overlap 4406000 GATAGGAGGTGACGC GGCGGCCGAGCTGCACGGCG TCGG CGCCGAGCCGCTCGATCACC TTCTCGTTCAGCAAC Rpal_4109 4406689 - 4407243 + | hypothetical protein Rpal_4110 4407664 - 4407236 - | hypothetical protein TERM 3068 4407362 - 4407419 + g 73 -14.2 -3.14132 | gap 3, overlap 4407363 TGCGCCGACACCGAT CG-CCGCTC-CCGCGCCGACAGCGCCG TACACGC CGGCGACGTCG-CGCGGCGAGCGGATG TTGCTGACGCGGCCG TERM 3069 4407363 - 4407417 + g 78 -15.7 -3.13403 | overlap 4407362 GCGCCGACACCGATC GCCGCTC-CCGCGCCGACAGCGCCG TACACGC CGGCGACGTCG-CGCGGCGAGCGGA TGTTGCTGACGCGGC Rpal_4111 4407867 - 4408250 + | Endoribonuclease L-PSP Rpal_4112 4408470 - 4409561 + | hypothetical protein TERM 3070 4410118 - 4410108 - g 72 -8.2 -4.07455 | overlap 4410109 TACGAAGATTACAAA GCGC AGC GCGC CCGCGAAGCCCGCGA Rpal_4113 4409667 - 4410305 + | Collagen triple helix repeat TERM 3071 4410314 - 4410284 - T 74 -5.4 -4.63592 | opp_overlap 4410300, overlap 4410287 4410296 4410299 4410300 4410302 CGGCAAGAAAAAGAA GAAGCGCAAGCA CAAGGAC TGATCGCGCTCC GCGCGATTAGTCTTG TERM 3072 4410339 - 4410287 - T 81 -7.8 -4.40123 | opp_overlap 4410300 4410332, overlap 4410284 4410296 4410299 4410300 4410302 4410338 CAAGAAAAAGAAGAA GCGCA-AGCACAAGGACTGATCGCGC TCC GCGCGATTAGTC-TTGTTCAATGAGC CCGCGCGATCAGCCG TERM 3073 4410327 - 4410299 - T 74 -11.7 -3.52539 | opp_overlap 4410300, overlap 4410284 4410296 4410287 4410300 4410302 GAAGCGCAAGCACAA GGACTGATCGCGC TCC GCGCGATTAGTCT TGTTCAATGAGCCCG TERM 3074 4410300 - 4410326 + T 100 -17.4 -3.67597 | opp_overlap 4410284 4410299 4410296 4410287 4410300 4410302 AAGCGCAAGCACAAG GACTGATCGCGC TCC GCGCGATTAGTC TTGTTCAATGAGCCC TERM 3075 4410326 - 4410300 - T 78 -15.2 -2.71041 | opp_overlap 4410300, overlap 4410284 4410299 4410296 4410287 4410302 AAGCGCAAGCACAAG GACTGATCGCGC TCC GCGCGATTAGTC TTGTTCAATGAGCCC Rpal_4114 4410614 - 4410348 - | hypothetical protein Rpal_4115 4410769 - 4411398 + | SOUL heme-binding protein Rpal_4116 4412618 - 4411413 - | protein of unknown function DUF1501 Rpal_4117 4414185 - 4412605 - | Protein of unknown function DUF1800 Rpal_4118 4414532 - 4416235 + | methyl-accepting chemotaxis sensory transducer TERM 3076 4416295 - 4416258 - f 83 -17.2 -2.52464 | gap 2, opp_overlap 4416259 CTCGCCTCCAACTTA GCCTGAAGGCCCGGCTTC ACCC GAAGCCGGGCCTTC--GC GTTTCTACCGCTCGC TERM 3077 4416259 - 4416296 + F 100 -22.1 -3.87815 | opp_overlap 4416258 TCGCCTCCAACTTAG CCTGAAGGCCCGGCTTC ACCC GAAGCCGGGCCTTCGCG TTTCTACCGCTCGCG Rpal_4119 4416372 - 4416914 + | hypothetical protein TERM 3078 4416926 - 4416897 - T 70 -9.9 -3.61398 | TCGCCGGCGCAAGAA CCGCGCCGGAC GACGTGAG GACCAGCGCGG CCGTCGGCCGAACCG Rpal_4120 4417451 - 4416969 - | bacterioferritin TERM 3079 4417476 - 4417493 + r 77 -12.7 -3.66654 | TCACTCCTGCAATCG GCGGCCA GGGC TGGCCGC TTTAGAATTAGAATA TERM 3080 4417605 - 4417581 - R 74 -10.6 -3.77264 | opp_overlap 4417590 4417599, overlap 4417582 CAAAACACTTAAGAA CCGGCGCGAC GCTCT GCCGCGCCGC ACAGCGCTTCGTTCA TERM 3081 4417604 - 4417582 - R 74 -14.1 -2.85274 | opp_overlap 4417590 4417599, overlap 4417581 AAAACACTTAAGAAC CGGCGCGAC GCTCT GCCGCGCCG CACAGCGCTTCGTTC Rpal_4121 4417774 - 4417574 - | putative bacterioferritin Rpal_4122 4418173 - 4418532 + | hypothetical protein Rpal_4123 4418753 - 4419037 + | hypothetical protein TERM 3082 4419079 - 4419100 + T 100 -17.3 -5.28942 | CGTCTGAATGCCGAA CCCGGCCGA GCGA TCGGCCGGG TTTTTGTTTGCCCTC Rpal_4124 4420358 - 4419114 - | lytic murein transglycosylase TERM 3083 4419503 - 4419555 + g 78 -14.9 -3.21912 | GCTCCGCCGCACTCA GCCGATCCGGCCG-GGCGAGCGTGA AGCCC TCACGCA-GCCACTGCCCGATCGGC TTGGTGACTTCCGGC Rpal_4125 4420948 - 4420358 - | hypothetical protein Rpal_4126 4421893 - 4421123 - | Trans-aconitate 2-methyltransferase Rpal_4127 4421993 - 4422292 + | protein of unknown function DUF497 Rpal_4128 4422279 - 4422536 + | hypothetical protein TERM 3084 4422742 - 4422765 + T 100 -18.2 -3.8917 | CCTCAAACTGGCTTA GCTGACGCGC CTCA GCGCGTCAGC TTCTTGTACTTCGCG Rpal_4129 4424402 - 4422753 - | ABC transporter related TERM 3085 4424636 - 4424599 - H 70 -11.9 -3.15249 | gap 1 CATAGCGGCGACGAA TGCGCCGCCGAGTCGGCG CGG CGCCGACCCA-CGGGGCG ATAAGCATGGCGAGC TERM 3086 4424836 - 4424785 - g 71 -13.7 -2.82015 | gap 2, overlap 4424828 CGGAGATGTACTACA TGCG-CGGCCCGGGACCG-GCCTGG CACG CCAAGCACGGTCACAAGCCGACGCG CCACTAAACCTCGAA Rpal_4130 4424643 - 4424843 + | hypothetical protein TERM 3087 4424903 - 4424867 - T 100 -21.7 -3.08046 | opp_overlap 4424872, overlap 4424872 TTGTCATCTGAAAAG CAAAACGCCCGCAGGTG AGC CACCGGCGGGCGTTTTA AAGCTGAGATTGGCC TERM 3088 4424872 - 4424898 + T 100 -19.4 -4.11394 | opp_overlap 4424867 4424872 ATCTGAAAAGCAAAA CGCCCGCAGGTG AGC CACCGGCGGGCG TTTTAAAGCTGAGAT TERM 3089 4424898 - 4424872 - T 100 -19.4 -4.67641 | opp_overlap 4424872, overlap 4424867 ATCTGAAAAGCAAAA CGCCCGCAGGTG AGC CACCGGCGGGCG TTTTAAAGCTGAGAT Rpal_4131 4426188 - 4424923 - | ErfK/YbiS/YcfS/YnhG family protein TERM 3090 4426431 - 4426461 + H 81 -10.4 -4.20712 | overlap 4426423 4426432 4426447 CGGCAATCGAGTCGC TGAGTCGTTTCGCG GCG CGTGATGCGACTCG TTTTGCGCTATTCTC TERM 3091 4426432 - 4426460 + H 70 -11.7 -3.11704 | overlap 4426423 4426431 4426447 GGCAATCGAGTCGCT GAGTCGTTTCGCG GCG CGTGATGCGACTC GTTTTGCGCTATTCT TERM 3092 4426605 - 4426615 + G 89 -8.2 -5.06414 | CATCCGAAATGCTTC CCGG TTT CCGG TTTTTGTTCGCGGCG TERM 3093 4427267 - 4427214 - g 77 -12.3 -3.64703 | gap 1, overlap 4427186 4427229 CTGCGCCCACGCAAA CCGCCGCAACCGAAAC-GGCGGCGCC TGC GACACCGGCTGCTCCGGTAGCGACCG CCCCTTCTGCCGAGG TERM 3094 4427548 - 4427524 - g 73 -9.1 -3.90744 | overlap 4427521 GCGTCCGCTAAAGAA GCGCCGCCAGG TGG CACGCCGGCGC ACACCGCGCGCCGAG Rpal_4132 4426598 - 4427596 + | conserved hypothetical protein, conserved Rpal_4133 4428469 - 4427609 - | Rhodanese domain protein Rpal_4134 4429003 - 4428587 - | Rhodanese domain protein Rpal_4135 4430325 - 4429150 - | hypothetical protein TERM 3095 4432348 - 4432360 + G 77 -10.5 -3.91897 | CGACTGTTGCGTCAC CGCGG CCA CCGCG TTTGTCGATGACGCC Rpal_4136 4430534 - 4432426 + | diguanylate cyclase with PAS/PAC sensor Rpal_4137 4432596 - 4432850 + | Transglycosylase-associated protein TERM 3096 4432943 - 4432930 - f 79 -9.5 -4.19799 | AACAAACAACAACAA CGGCG CGCG CGCCG GATCAGACGAGGCTG Rpal_4138 4432965 - 4433807 + | ATPase associated with various cellular activities AAA_5 TERM 3097 4433971 - 4433927 - f 74 -14.4 -2.62735 | opp_overlap 4433923 4433962 AGAGTTCGGAGAGTA TG-GATTCCGGGTCTGCGCCGC TAC GCGGCGCAT-CCCGGAATGACA AAAGTTAGCTTGTTG TERM 3098 4434203 - 4434222 + F 100 -10.7 -4.69549 | TCAGAATTTGCGTCA TGGCCGG CTTGTC CCGGCCA TTTTCGTTTTGGGTT Rpal_4139 4434412 - 4435455 + | Vanillate monooxygenase Rpal_4140 4435459 - 4436214 + | transcriptional regulator, GntR family Rpal_4141 4436245 - 4437237 + | oxidoreductase FAD/NAD(P)-binding domain protein Rpal_4142 4437623 - 4437339 - | hypothetical protein Rpal_4143 4438360 - 4437764 - | GCN5-related N-acetyltransferase Rpal_4144 4439438 - 4438509 - | SMP-30/Gluconolaconase/LRE domain protein TERM 3099 4439464 - 4439486 + r 71 -8.4 -3.88232 | gap 1 CGAGATGTTTGTTGT GCG-CGGGC GACGAG GCCCGGCGC TTATTGTCTCGGGGA Rpal_4145 4439958 - 4439590 - | putative exported protein of unknown function Rpal_4146 4440074 - 4440418 + | Excinuclease ABC C subunit domain protein TERM 3100 4441160 - 4441195 + T 70 -11.9 -3.14931 | gap 2, opp_overlap 4441152, overlap 4441162 GACCAGACGCGCGAA TG-CG-CGCCGGTGCGC ACGA GCGCACCAGCGACGTCA TTGCTGCAAGATGGG TERM 3101 4441162 - 4441192 + T 75 -14.7 -2.78018 | gap 1, opp_overlap 4441152, overlap 4441160 CCAGACGCGCGAATG CG-CGCCGGTGCGC ACGA GCGCACCAGCGACG TCATTGCTGCAAGAT TERM 3102 4441241 - 4441229 - T 70 -10.5 -3.55548 | overlap 4441220 4441230 GAACAGGCCGGCAAA GCGCC TCT GGCGC CGCCGGCAGGCGAAG Rpal_4147 4441512 - 4441258 - | hypothetical protein Rpal_4148 4441985 - 4441509 - | Glutathione peroxidase Rpal_4149 4443401 - 4442004 - | Amidase Rpal_4150 4443730 - 4443473 - | hypothetical protein Rpal_4151 4443867 - 4444856 + | proline iminopeptidase Rpal_4152 4445639 - 4444866 - | short-chain dehydrogenase/reductase SDR Rpal_4153 4445737 - 4446219 + | transcriptional regulator, HxlR family Rpal_4154 4446239 - 4446913 + | hypothetical protein TERM 3103 4447192 - 4447156 - g 77 -5.1 -4.58685 | gap 1, opp_overlap 4447155 4447157 4447160, overlap 4447158 4447159 AAAGCGCTCGAAAAA CAC-GGCCAGGCGATC TGGCTG GATTTCCTGGCCCGCG GCTTTATCGCCAAGG TERM 3104 4448034 - 4448019 - g 75 -9 -4.09685 | overlap 4448022 GCTGATCGGTCAAAA CACCGT CAAC ACGGTG CCGCCGGCGACGCTC TERM 3105 4448623 - 4448656 + G 72 -13.2 -3.19117 | gap 1, opp_overlap 4448636, overlap 4448634 CCGGCCCAGGTGCGC GCGCTCGAAGCCAGC GTCAA GCTGGCCTCGA-CGC TGTTCATCGTCTCGT TERM 3106 4449464 - 4449448 - g 72 -5 -4.56597 | overlap 4449449 4449450 GCGGCGTTCGAAAAA TCCGGC GCACT GCCGGC GGAGACGCCAGCGCT TERM 3107 4449711 - 4449665 - g 75 -15.3 -2.78463 | gap 2, opp_overlap 4449704 AGGCGCTGCAGGATA TTCGGCTGAAGGTTCGCGACCAT CGC AAGGTCGCG-ACCTGC-GCCGAA TTCGGCCCGCGCTTC Rpal_4155 4447129 - 4449981 + | transaldolase TERM 3108 4450043 - 4450077 + F 70 -7.9 -4.07246 | gap 1, opp_overlap 4450043 4450039 4450047, overlap 4450039 GAGCGAAGCGACGAA GCAATCCAGAG-TCTG TTTA CTGAGCCCTGGATTGC TTTGCTTTCGGCTCG TERM 3109 4450145 - 4450118 - f 91 -9.2 -4.59853 | gap 1, overlap 4450122 GTAACCGCCTAAAAA CGTAGCCTCGC ACATCAA GCGAGGC-ACG GCTCAACAGTGGAGA TERM 3110 4450523 - 4450499 - g 79 -10.7 -3.91352 | AGACGCTGAAGGAAA CCAGCATCGAC TAC GTCGATGTCGG CACCTCCGGTGGCAT Rpal_4156 4450168 - 4451208 + | 6-phosphogluconate dehydrogenase, decarboxylating Rpal_4157 4451205 - 4452719 + | glucose-6-phosphate 1-dehydrogenase TERM 3111 4453347 - 4453374 + G 77 -13.4 -3.60098 | CTTCCAAGCGCGACA TCCTTGCCCGCG TGTT CGCCGGCGAGGA TTTGCCGTCCGCGCT Rpal_4158 4452722 - 4453462 + | 6-phosphogluconolactonase Rpal_4159 4453446 - 4453994 + | carbohydrate kinase, thermoresistant glucokinase family Rpal_4160 4454118 - 4454936 + | Cof-like hydrolase Rpal_4161 4456741 - 4454933 - | glycoside hydrolase 15-related Rpal_4162 4458698 - 4456746 - | 4-alpha-glucanotransferase TERM 3112 4457976 - 4457956 - G 74 -12.5 -3.56099 | opp_overlap 4457956 CAGAATTTGTCGAAA GCGGCGCGC AAG GCACGCCAC TTCATCGTCGCCACC Rpal_4163 4458907 - 4460862 + | alpha amylase catalytic region Rpal_4164 4460873 - 4464175 + | trehalose synthase TERM 3113 4464973 - 4464993 + G 72 -11.9 -3.54424 | overlap 4464957 4464982 GCCGAGCAACTGCCG GCCTATGTC CGC GACATGGGC TTTACCCACGTCGAA Rpal_4165 4464172 - 4466322 + | 1,4-alpha-glucan branching enzyme TERM 3114 4466425 - 4466448 + F 90 -13.9 -4.07568 | AATGTGACGGTTTGG CGATGCCCG CGCGAT CGGGCATCG TTTTGCACAAAGCCA TERM 3115 4467007 - 4466949 - g 72 -11.9 -3.48924 | gap 5, overlap 4466987 CGACCGCCGAGACAA CGCGCGCGGC-A-TGCCGAAGG-C-CGTCG TGGT CGACGAGACCGTCGGCAGCGGCCGC-CGCG AGACGCGGCCCGGCG Rpal_4166 4466560 - 4468641 + | glycogen debranching enzyme GlgX Rpal_4167 4468638 - 4470404 + | malto-oligosyltrehalose trehalohydrolase Rpal_4168 4470404 - 4473190 + | malto-oligosyltrehalose synthase TERM 3116 4473179 - 4473201 + T 71 -11.3 -3.48593 | gap 1 GGCGCGAAGCGAGTC CGGCGGGGCT GAGC AGCCC-GCCG TTGTCTGCAGAGCTG TERM 3117 4473454 - 4473415 - T 74 -9.3 -3.89346 | gap 1, opp_overlap 4473415, overlap 4473418 CGCGCACCCCACAAA CACCGAGGCCGCCCGG GAGCTGGAG CCGGACGGCCT-GACG GGGTTTGTGCCGAGC Rpal_4169 4473899 - 4473591 - | hypothetical protein Rpal_4170 4474076 - 4474240 + | hypothetical protein Rpal_4171 4477123 - 4474379 - | DNA ligase D TERM 3118 4475279 - 4475312 + g 74 -12.3 -3.53761 | gap 1 GCCCATCACCTCGGA GCGGGCGGCATCG-GC CCG GCGCGGCGCCGCGCGC TTTGCGGCCGGCTTG TERM 3119 4475771 - 4475801 + g 70 -2.5 -4.66609 | gap 2 CTTGGTCCAGCCATC GCTGCGACCGGAGCG ATA CGCGGCG-TCG-AGC TTTTTCGATACGATC TERM 3120 4476604 - 4476647 + g 73 -14.4 -3.14132 | AGCGGTCGTCGTCGA GCACGGTGTTGGCGCCGCCC TCGC GGGCGTCGTCGTCGCGGTGC TTGATCAGCAGCCAA Rpal_4172 4477257 - 4478138 + | Ku protein Rpal_4173 4478758 - 4478366 - | hypothetical protein Rpal_4174 4479079 - 4478822 - | SirA family protein Rpal_4175 4479207 - 4479827 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 3121 4479863 - 4479904 + T 81 -15.9 -3.06183 | opp_overlap 4479827 4479868 4479872, overlap 4479868 4479872 GCGAGGAGCGTAGCG ACGAAGCAATCCAGCACCG AGCA CTGGGCTGGATTGCTTCGC TTCACTCGCAATGAC TERM 3122 4479868 - 4479899 + T 73 -13 -3.19192 | opp_overlap 4479868 4479872, overlap 4479863 4479872 GAGCGTAGCGACGAA GCAATCCAGCACCG AGCA CTGGGCTGGATTGC TTCGCTTCACTCGCA TERM 3123 4479899 - 4479868 - T 73 -13 -3.18582 | opp_overlap 4479868 4479863 4479872, overlap 4479872 GAGCGTAGCGACGAA GCAATCCAGCACCG AGCA CTGGGCTGGATTGC TTCGCTTCACTCGCA Rpal_4176 4480989 - 4479937 - | Alcohol dehydrogenase GroES domain protein TERM 3124 4480159 - 4480135 - G 76 -14.9 -3.15663 | ACGCATCGGGATGAA CGGCAGCGCCC ATG GTGCGCCGCCG CCGAACAGACCGACG TERM 3125 4480288 - 4480336 + g 83 -12.2 -4.08216 | gap 1, overlap 4480289 GATGGCCGCGATCTG CGCCAGCGCGTCCGGCGCGG-CG CCAT CGACCGTGCCAAGCGCGCCGGCC TTTTGGGCCGCATCG TERM 3126 4480289 - 4480335 + g 77 -15.7 -3.04715 | gap 1, overlap 4480288 ATGGCCGCGATCTGC GCCAGCGCGTCCGGCGCGG-CG CCAT CGACCGTGCCAAGCGCGCCGGC CTTTTGGGCCGCATC Rpal_4177 4482030 - 4481068 - | 2-nitropropane dioxygenase NPD Rpal_4178 4482142 - 4483704 + | AMP-dependent synthetase and ligase TERM 3127 4483717 - 4483767 + T 71 -12.7 -3.01712 | gap 2, overlap 4483720 4483721 TAGTTCGCAATTCCG TCAA-TGGTCATTCCGGG-GCGCGC GCA GCGCGAACCCGGAGTGACGACTTGG TATTACGACCGAAAC TERM 3128 4483720 - 4483763 + T 72 -12.4 -3.36273 | gap 1, overlap 4483717 4483721 TTCGCAATTCCGTCA ATGGTCATTCCGGG-GCGCGC GCA GCGCGAACCCGGAGTGACGAC TTGGTATTACGACCG TERM 3129 4483721 - 4483762 + T 77 -15.9 -2.6155 | gap 1, overlap 4483720 4483717 TCGCAATTCCGTCAA TGGTCATTCCGGG-GCGCGC GCA GCGCGAACCCGGAGTGACGA CTTGGTATTACGACC Rpal_4179 4484492 - 4483770 - | Urease accessory protein UreF Rpal_4180 4485138 - 4484482 - | UreE urease accessory domain protein Rpal_4181 4485446 - 4485147 - | Antibiotic biosynthesis monooxygenase Rpal_4182 4487362 - 4485650 - | urease, alpha subunit TERM 3130 4486192 - 4486208 + g 83 -13.7 -3.84271 | GCGCCGAGTCCTGCG GCAGCGC GCC GCGCTGC TTCTTCATCTTGTCG Rpal_4183 4487895 - 4487359 - | metal dependent phosphohydrolase TERM 3131 4487419 - 4487442 + g 71 -9.4 -3.86015 | TTCCAGATGGTCGTT GACGCCGCGG CAGC CCGCAGCGAC TTTCTCGGCCCAATC Rpal_4184 4488200 - 4487895 - | urease, beta subunit Rpal_4185 4488664 - 4488362 - | urease, gamma subunit TERM 3132 4488758 - 4488715 - R 83 -15.3 -3.14931 | opp_overlap 4488751 GTGACGCGGGATCAA CTCAGCCACAGCCGC-GGCAG CGCG CGGCCGGCGGC-GCGGCCGAG GACGGTCATCATGTC Rpal_4186 4489628 - 4488711 - | Urease accessory protein UreD Rpal_4187 4490522 - 4489827 - | urea ABC transporter, ATP-binding protein UrtE Rpal_4188 4491488 - 4490724 - | urea ABC transporter, ATP-binding protein UrtD Rpal_4189 4492660 - 4491485 - | urea ABC transporter, permease protein UrtC Rpal_4190 4494446 - 4492833 - | urea ABC transporter, permease protein UrtB TERM 3133 4493764 - 4493794 + g 76 -16 -2.90075 | TCGATCGCCGCCTTG GCGCCGGCGATGCC GCT GGCGACGGCGGCGC TCTGGTTCGAAGGCG TERM 3134 4494485 - 4494522 + r 82 -14.2 -3.30124 | gap 2, opp_overlap 4494490, overlap 4494488 GGTGCGTCGGAGGAT G-GAAAGGGCGGCG-CGC ACCG GCGTCGCCGCCCTCTCGC TTGTCGGACGTCAGC TERM 3135 4494488 - 4494518 + r 74 -14.7 -2.5955 | gap 1, opp_overlap 4494490, overlap 4494485 GCGTCGGAGGATGGA AAGGGCGGCG-CGC ACCG GCGTCGCCGCCCTC TCGCTTGTCGGACGT TERM 3136 4494516 - 4494490 - R 100 -17.3 -3.68351 | gap 1, opp_overlap 4494488 4494485 GTCGGAGGATGGAAA GGGCGGCG-CGC ACCG GCGTCGCCGCCC TCTCGCTTGTCGGAC Rpal_4191 4495878 - 4494556 - | urea ABC transporter, urea binding protein TERM 3137 4495726 - 4495681 - G 73 -9.6 -3.96148 | CTCGTCGATCAGAAA CAGCACCGTGTCCTTCAGCG TGGTCT CGCTGATCGCCATGGTGCCG GACAGCGAATGCAGC TERM 3138 4495826 - 4495806 - G 77 -16.1 -2.64981 | opp_overlap 4495806 4495805 4495824, overlap 4495802 4495803 ACAGGCCCAAAGCCA GGCCGGCCG CCG CGGCCAGCC ATTTGCGGCGGCTGA TERM 3139 4496334 - 4496356 + H 100 -14.8 -4.11623 | CAGAGTTTCCAAGCG CTCCCGACGG GCT CCGTCGGGCG TTTGCTTTCATGATG TERM 3140 4497768 - 4497748 - g 75 -4.5 -4.62069 | overlap 4497749 TTTGCAGCGCAAAAA CCGTCCGGC GCA GCCGACCGC TCAGCACCGACCGCA Rpal_4192 4496366 - 4497790 + | DEAD/DEAH box helicase domain protein Rpal_4193 4497815 - 4498093 + | translation initiation factor IF-1 TERM 3141 4498141 - 4498115 - f 100 -22.4 -3.9461 | overlap 4498137 GCTGCCTAATAACAA GGCGCTTTGCCG ACC CGGCAAAGCGCC CGACGCCCCCTACTT Rpal_4194 4498375 - 4498587 + | cold-shock DNA-binding domain protein TERM 3142 4498608 - 4498640 + T 88 -17 -3.06991 | opp_overlap 4498593 4498611, overlap 4498612 TTTCGGTTCTGAACC GAATGGGGCCGCGC CAACA GCGCGGCCTCTTTC ATTTTGGGCATGCTC TERM 3143 4498612 - 4498636 + T 100 -16.4 -4.20136 | opp_overlap 4498611, overlap 4498608 GGTTCTGAACCGAAT GGGGCCGCGC CAACA GCGCGGCCTC TTTCATTTTGGGCAT Rpal_4195 4499327 - 4498701 - | TadE family protein Rpal_4196 4499873 - 4499340 - | TadE family protein TERM 3144 4499754 - 4499733 - G 79 -7.4 -4.56597 | overlap 4499753 CTGGCTGGCGAAAAA GATCATTG CCACTT CAATGATC GCGAACAACAACGCG Rpal_4197 4500781 - 4500945 + | Flp/Fap pilin component TERM 3145 4500993 - 4500966 - f 73 -11.2 -3.61517 | opp_overlap 4500970, overlap 4500970 AGGTTGGCCGAACAA TCAAGGCCCCGG CGTT CCGGGGCCTTTT TTGTTCATCGTCCCT TERM 3146 4500989 - 4500970 - f 89 -16.4 -3.53444 | opp_overlap 4500970, overlap 4500966 TGGCCGAACAATCAA GGCCCCGG CGTT CCGGGGCC TTTTTTGTTCATCGT TERM 3147 4500970 - 4500989 + F 100 -16.4 -5.52023 | opp_overlap 4500970 4500966 TGGCCGAACAATCAA GGCCCCGG CGTT CCGGGGCC TTTTTTGTTCATCGT TERM 3148 4501224 - 4501244 + F 76 -6.1 -4.58283 | overlap 4501225 GCCATCTAGTTTGGT TTCGAGCCG CAA TGGTTCGAG TTTTTCGCAGAGTTC Rpal_4198 4501273 - 4501797 + | peptidase A24A prepilin type IV Rpal_4199 4501904 - 4502485 + | Flp pilus assembly protein CpaB Rpal_4200 4502500 - 4503942 + | type II and III secretion system protein TERM 3149 4503992 - 4504015 + G 75 -13.8 -3.26546 | opp_overlap 4503986 TCCGCCAAAGTGGCG CGCGGCCTCG GTCT TGGGGCCGCG TTGATCGGTTTCTCG Rpal_4201 4503962 - 4504690 + | pilus (Caulobacter type) biogenesis lipoprotein CpaD Rpal_4202 4504687 - 4505958 + | putative pilus assembly protein CpaE TERM 3150 4506042 - 4506024 - g 83 -16 -3.53811 | GTCAGGGCCCCGAAA CCGGCGAG CTT CTCGCCGG AGCCGGCGATGCGCG Rpal_4203 4505979 - 4507433 + | type II secretion system protein E Rpal_4204 4507446 - 4508420 + | type II secretion system protein TERM 3151 4508786 - 4508844 + G 70 -10.8 -3.53091 | overlap 4508787 4508800 TTCCTGTTCTTCCGC ATGGTGATGCCGATCGCGTTCGGCGCGG CCT CGGCGCTGTACGTGTTCGTCATCGCGAA TTTCGACCAGCCGCT TERM 3152 4509309 - 4509292 - g 74 -9.8 -3.79906 | overlap 4509293 CGAGGCCGAGAAGAA GGCGGC GGCGCT GCCGCC CAAGCTCACCGTGCC Rpal_4205 4508429 - 4509403 + | type II secretion system protein Rpal_4206 4510221 - 4509427 - | Tetratricopeptide TPR_2 repeat protein TERM 3153 4509886 - 4509919 + g 70 -10.1 -3.73534 | gap 1, opp_overlap 4509875, overlap 4509917 GAAATTGCCGTTGTC GGC-GAGCGCGCGGCC GTA GGCAGCCCGCACCGCC TTGTTGCTGGGATTG TERM 3154 4511113 - 4511088 - g 73 -11.1 -3.75024 | GCTGATCATGAAGAA GGACATGGGCG GCGC CGCCAACGTCC TGGCGCTGGCCTCGA TERM 3155 4511448 - 4511414 - g 71 -9.1 -3.86106 | ACACCAACGATGAAA CGCTCGCGCTCGACG TCGCG CGTCACGCTCGCGCG GAGAACGATCCGCTA Rpal_4207 4510339 - 4511721 + | Leucyl aminopeptidase TERM 3156 4512100 - 4512062 - g 77 -12.3 -3.72576 | gap 1 GGTCCCTCGATCAAA CTGCCGCCGGCCGAGACG CTGC CG-CTCGGCGCGCGGCTG GCGATCGTGCGCGAG Rpal_4208 4511714 - 4512559 + | NLP/P60 protein Rpal_4209 4513181 - 4512543 - | NUDIX hydrolase TERM 3157 4513105 - 4513162 + g 83 -14.1 -3.78022 | gap 1, opp_overlap 4513098 GCCATGAACCCCTGC CCGATCAGTTCAGGGGCCGACACGGTGA CGT TCGCCGCG-CGGTCCGCGAGCTGATCAG TTTGGTCACTCTCGC Rpal_4210 4514826 - 4513189 - | ABC transporter related Rpal_4211 4516010 - 4514832 - | binding-protein-dependent transport systems inner membrane component Rpal_4212 4517119 - 4516010 - | binding-protein-dependent transport systems inner membrane component TERM 3158 4516349 - 4516364 + g 79 -4.7 -4.72272 | GTATTGCTTACGGAT CTCGT CCAGGA ACGAG TTTTTGGTCAGCAGC Rpal_4213 4518986 - 4517121 - | extracellular solute-binding protein family 5 Rpal_4214 4520896 - 4519001 - | extracellular solute-binding protein family 5 TERM 3159 4520431 - 4520420 - G 72 -5.8 -4.43477 | opp_overlap 4520428, overlap 4520422 4520425 CGCATCGAACGAAAA GACG ACGT CGTC GGCCGTGACCGGCTT TERM 3160 4520526 - 4520499 - G 77 -4 -4.75372 | gap 1, opp_overlap 4520521 ATCACCCAGGAAAAA TCGTCGGGATGCG CAG CGC-CCTCGGCGA GCAAGCCGTATTCGG TERM 3161 4521082 - 4521062 - R 100 -18.3 -5.07652 | overlap 4521075 TTTCGCAAAACAAAA CGGCCGGGA AAA TCCCGGCCG TTCAACGTCCCAGTC Rpal_4215 4521663 - 4521109 - | cytochrome c class I Rpal_4216 4521863 - 4522600 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase Rpal_4217 4522672 - 4523514 + | Prephenate dehydratase TERM 3162 4523537 - 4523573 + T 75 -13.9 -3.06183 | opp_overlap 4523541, overlap 4523541 TCTCGGCGTTTGTGA CGAAGATCATCGACC GATCACA GGTCGATGATCTTCA TTCGCTCAAGATAGC TERM 3163 4523541 - 4523569 + T 74 -13.3 -3.37344 | opp_overlap 4523541, overlap 4523537 GGCGTTTGTGACGAA GATCATCGACC GATCACA GGTCGATGATC TTCATTCGCTCAAGA TERM 3164 4523569 - 4523541 - T 73 -13.3 -3.14132 | opp_overlap 4523537 4523541 GGCGTTTGTGACGAA GATCATCGACC GATCACA GGTCGATGATC TTCATTCGCTCAAGA Rpal_4218 4524180 - 4523554 - | transcriptional regulator, TetR family Rpal_4219 4524325 - 4525485 + | secretion protein HlyD family protein Rpal_4220 4525482 - 4527014 + | drug resistance transporter, EmrB/QacA subfamily Rpal_4221 4527031 - 4527759 + | Siderophore-interacting protein Rpal_4222 4528843 - 4527827 - | Luciferase-like monooxygenase TERM 3165 4529482 - 4529452 - g 72 -5.4 -4.42806 | GCATCCTGAAAGAAA CAGATCTGACGC CAGCGGC GCATCTGACCTG CGTCGATGCCCCCTG Rpal_4223 4529253 - 4530140 + | 5,10-methylenetetrahydrofolate reductase Rpal_4224 4530153 - 4534034 + | methionine synthase Rpal_4225 4535169 - 4535456 + | Excinuclease ABC C subunit domain protein Rpal_4226 4537285 - 4535783 - | glycerol kinase TERM 3166 4536820 - 4536851 + g 73 -12.9 -3.28712 | opp_overlap 4536809 CGAATTTCAGCTCGC CGCGCTCGGCGCG AGCGCG TGCGCCGGGCACG TTGTCGAGCAGCCAG Rpal_4227 4537494 - 4538078 + | response regulator receiver and ANTAR domain protein Rpal_4228 4538075 - 4539235 + | putative nitrate transport protein Rpal_4229 4539256 - 4539696 + | globin TERM 3167 4539912 - 4539953 + F 100 -12.4 -5.54894 | gap 3, opp_overlap 4539912 4539911 AACTCCGACAGCAAC GCCGCTGTCCTGG--CCTCGC TCC GCGAGCAACCAGG-CAGCGGC TTTTTTTCGTCGGTT TERM 3168 4539953 - 4539912 - f 74 -14.6 -2.55847 | gap 3, opp_overlap 4539912, overlap 4539911 AACTCCGACAGCAAC GCCGCTGTCCTGG-C-CTCGC TCC GCGAGCAACCAGG-CAGCGGC TTTTTTTCGTCGGTT Rpal_4230 4540054 - 4540476 + | globin Rpal_4231 4540519 - 4542291 + | precorrin-3B synthase TERM 3169 4543581 - 4543591 + G 75 -6.8 -4.30719 | TTCGGCCATCAGCGC TCGG CCT CCGA TTTCTTCTACGAGGA Rpal_4232 4542288 - 4543907 + | oxidoreductase FAD/NAD(P)-binding domain protein TERM 3170 4543958 - 4544009 + T 83 -17.5 -2.56596 | gap 2, opp_overlap 4543992 4543994 4543996 4543998, overlap 4543929 4543928 4543955 4543959 4543963 GCGCGCGCCTTACGC GCGAACCCGGAATC-C-CGAGCTTG TTTC CAAGCAAGAGAGATTCCGGGTTCGC TCACTTCGTGAGCGC TERM 3171 4544035 - 4543994 - T 70 -12.3 -3.23853 | gap 1, opp_overlap 4543963 4543958 4543955, overlap 4543992 4543996 4543998 TGTTTCCAAGCAAGA GAGATTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAATGAC GACGGAGAGGTTGAT TERM 3172 4544033 - 4543996 - T 76 -13.5 -3.18366 | gap 1, opp_overlap 4543963 4543958 4543955, overlap 4543994 4543992 4543998 TTTCCAAGCAAGAGA GATTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAATG ACGACGGAGAGGTTG TERM 3173 4544031 - 4543998 - T 86 -16.1 -3.15147 | gap 1, opp_overlap 4543963 4543958 4543955, overlap 4543996 4543994 4543992 TCCAAGCAAGAGAGA TTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAA TGACGACGGAGAGGT TERM 3174 4544072 - 4544105 + T 91 -19.1 -2.87931 | gap 1 TCCCTCCACGCGTCA TTCCGGA-TTGCGAGC GCA GCTCGCAAGTCCGGAA TCTATAACCCCTGCA Rpal_4233 4545000 - 4544227 - | short-chain dehydrogenase/reductase SDR TERM 3175 4545225 - 4545248 + r 91 -18.2 -3.14564 | CGCTCCGCCGGACGA CCTCTCCCCG CGCG CGGGGAGAGG TTAGTCCGAACGTGC Rpal_4234 4546411 - 4545269 - | pimeloyl-CoA dehydrogenase, small subunit TERM 3176 4546488 - 4546545 + r 100 -21.3 -3.14132 | overlap 4546492 GGGATGCGCCCTCTT GGGCGCAGGCCCGGAATCCATACTCCC AGCA GGGGTTATGGATTCCGGGCTCGCTCAC TTCGTGAGCGCCCCG TERM 3177 4546492 - 4546541 + r 100 -23.7 -2.56596 | overlap 4546488 TGCGCCCTCTTGGGC GCAGGCCCGGAATCCATACTCCC AGCA GGGGTTATGGATTCCGGGCTCGC TCACTTCGTGAGCGC Rpal_4235 4547770 - 4546580 - | pimeloyl-CoA dehydrogenase, large subunit TERM 3178 4547941 - 4547964 + r 91 -18.2 -3.20382 | CGGCTTGCCGGTCGA CCTCTCCCCG CGCG CGGGGAGAGG TTACTCAGTGTCCGC Rpal_4236 4549171 - 4547984 - | acetyl-CoA acetyltransferase Rpal_4237 4550861 - 4549203 - | dicarboxylate/CoA ligase PimA TERM 3179 4550783 - 4550736 - G 77 -10.6 -3.78775 | gap 1 CTGCCGATCACGAAA CT-CCAGCGCCGGCCGCGA GCTGTACTCCT TCGCGGCCTGCGCCAGCAG CTCCGGCAATGTCCC Rpal_4238 4553139 - 4551040 - | 3-hydroxyacyl-CoA dehydrogenase NAD-binding Rpal_4239 4553272 - 4554138 + | transcriptional regulator, IclR family Rpal_4240 4554169 - 4554969 + | ABC transporter related Rpal_4241 4554966 - 4555679 + | ABC transporter related Rpal_4242 4555690 - 4556568 + | inner-membrane translocator Rpal_4243 4556571 - 4557590 + | inner-membrane translocator TERM 3180 4557615 - 4557641 + F 100 -19.5 -5.27335 | CACCGACCACTGCCA GCCCCTCGCGA CCCGT TCGCGAGGGGC TTTTTCTTTGGCCGC Rpal_4244 4557789 - 4559024 + | Extracellular ligand-binding receptor Rpal_4245 4559205 - 4560437 + | ABC transporter substrate-binding protein TERM 3181 4560471 - 4560496 + F 100 -19.1 -4.86731 | TCCGATTCTCACCCC TCCCCCGGCAA GCGA TTGCCGGGGGA TTTTCTTTGCGCCGA Rpal_4246 4560785 - 4562014 + | Extracellular ligand-binding receptor TERM 3182 4562049 - 4562085 + T 100 -17.9 -3.64822 | opp_overlap 4562050 4562053 4562056, overlap 4562052 4562056 CAGCACTCAACAACA AGCAGAAGCCCCGGGCG TCA CGCCCGGGGCTTCGTCG TTTCGATCCGCCGAT TERM 3183 4562084 - 4562050 - T 100 -21.4 -3.97709 | opp_overlap 4562049 4562052 4562056, overlap 4562053 4562056 AGCACTCAACAACAA GCAGAAGCCCCGGGCG TCA CGCCCGGGGCTTCGTC GTTTCGATCCGCCGA TERM 3184 4562052 - 4562082 + T 100 -22.6 -2.94144 | opp_overlap 4562050 4562053 4562056, overlap 4562049 4562056 CACTCAACAACAAGC AGAAGCCCCGGGCG TCA CGCCCGGGGCTTCG TCGTTTCGATCCGCC TERM 3185 4562081 - 4562053 - T 100 -26.1 -3.0371 | opp_overlap 4562052 4562049 4562056, overlap 4562050 4562056 ACTCAACAACAAGCA GAAGCCCCGGGCG TCA CGCCCGGGGCTTC GTCGTTTCGATCCGC TERM 3186 4562078 - 4562056 - T 100 -22 -3.64882 | opp_overlap 4562056 4562052 4562049, overlap 4562053 4562050 CAACAACAAGCAGAA GCCCCGGGCG TCA CGCCCGGGGC TTCGTCGTTTCGATC TERM 3187 4562056 - 4562078 + T 100 -22 -3.33483 | opp_overlap 4562053 4562050 4562056, overlap 4562052 4562049 CAACAACAAGCAGAA GCCCCGGGCG TCA CGCCCGGGGC TTCGTCGTTTCGATC Rpal_4247 4562639 - 4562139 - | protein of unknown function DUF892 Rpal_4248 4562884 - 4563930 + | Mg2 transporter protein CorA family protein TERM 3188 4564192 - 4564224 + G 77 -15.6 -3.05844 | gap 2, overlap 4564215 CCGGTGCGGCCGATC TCGCGCGCAAGGCGCC GGA GGCGCC--GCGCGCGG TGTTCGACTGGAGCG TERM 3189 4565169 - 4565183 + G 73 -12.8 -3.44848 | overlap 4565166 GCCAACTATCCGTAT GCGCGG GTG CCGCGC TATTTCGTCCGCCAG Rpal_4249 4564119 - 4566131 + | Carbohydrate-selective porin OprB TERM 3190 4566239 - 4566208 - T 76 -10.9 -3.7398 | gap 1, overlap 4566206 TTGCAAGGGAAAAGA CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG AGGGTCTCGCACGGG Rpal_4250 4567564 - 4566392 - | amidohydrolase TERM 3191 4568275 - 4568300 + G 77 -11.1 -3.85698 | gap 1, opp_overlap 4568270 4568271, overlap 4568270 TCAACCAGAAGCGCG GCCG-GCGCTGG TCG TCGGCGCGCGGC TTTCTCAAGCCCGCG Rpal_4251 4567689 - 4569308 + | glucose-methanol-choline oxidoreductase Rpal_4252 4569308 - 4570210 + | alpha/beta hydrolase fold Rpal_4253 4571626 - 4570235 - | aminotransferase class-III TERM 3192 4571670 - 4571693 + r 72 -3.8 -4.66535 | gap 1 CCGTCAACACAAAAG GCTGGCGGTGC GTC GCACT-CGAGC TTTCTTTTCAGAGTT TERM 3193 4571907 - 4571895 - R 76 -6.2 -4.56597 | overlap 4571878 4571897 CCGGTGCGGGAAAAA CGCC TCCCC GGCG AAGTCCCGCCCGGGG Rpal_4254 4574563 - 4571957 - | hopanoid biosynthesis associated RND transporter like protein HpnN TERM 3194 4572201 - 4572148 - G 71 -3 -4.63218 | gap 3, overlap 4572149 GGGCGCTGAAGAAAA TCGCCCGGGTCAGCGCCGACTGCAGCA GGT TGGTGCGGCCGGAGC-G-CC-AGGCGG TCACGTAATAGATCT TERM 3195 4574245 - 4574228 - G 89 -10.5 -4.56597 | overlap 4574206 GCTGCGGTCGAAAAA CGGCCCG CCGC CGAGCCG CTTCACCGAGTCGAA Rpal_4255 4574876 - 4575820 + | hydroxymethylbutenyl pyrophosphate reductase Rpal_4256 4575860 - 4577020 + | hopanoid biosynthesis associated radical SAM protein HpnH TERM 3196 4577070 - 4577051 - T 100 -16.4 -4.16943 | opp_overlap 4577051 TTCCACATTTCAAAA GCGCGGCC CGCG GGCCGCGC TTTTTTGTTGAGTAC TERM 3197 4577051 - 4577070 + T 100 -16.4 -5.4833 | opp_overlap 4577051 TTCCACATTTCAAAA GCGCGGCC CGCG GGCCGCGC TTTTTTGTTGAGTAC Rpal_4257 4578100 - 4577096 - | phosphate ABC transporter, periplasmic phosphate-binding protein Rpal_4258 4579378 - 4578134 - | phosphonoacetate hydrolase Rpal_4259 4579536 - 4580426 + | transcriptional regulator, LysR family TERM 3198 4580516 - 4580478 - T 76 -10.9 -3.82083 | gap 1, overlap 4580479 4580481 CGATGACAACGGAAA TCACGTC-CGCGCCGCCC TCAC AGGCGGCGCGTGATGCGC TCAGATCTCGGCGAC TERM 3199 4580515 - 4580479 - T 77 -14.4 -2.88768 | gap 1, overlap 4580478 4580481 GATGACAACGGAAAT CACGTC-CGCGCCGCCC TCAC AGGCGGCGCGTGATGCG CTCAGATCTCGGCGA TERM 3200 4580513 - 4580481 - T 75 -13.4 -2.98778 | gap 1, overlap 4580479 4580478 TGACAACGGAAATCA CGTC-CGCGCCGCCC TCAC AGGCGGCGCGTGATG CGCTCAGATCTCGGC Rpal_4260 4581260 - 4580517 - | hopanoid-associated phosphorylase Rpal_4261 4583218 - 4581257 - | squalene-hopene cyclase Rpal_4262 4584508 - 4583252 - | squalene-associated FAD-dependent desaturase TERM 3201 4583427 - 4583481 + g 80 -9.1 -4.17089 | opp_overlap 4583446, overlap 4583428 GTAGCGGCGAACGTG GCGCGGCGCTCGCGGACAATTTGCC ACGGC GGCAGATTGGCCGAGATCCCCGCAA TTTTACAGATTTCGC Rpal_4263 4585347 - 4584508 - | squalene synthase HpnD TERM 3202 4584740 - 4584698 - G 75 -9.1 -4.07568 | gap 2 TCGGCGGCGGCAAAA TGCGCGAGCGCACGCTCGACC AGC GG-CGCGCAGACGCTCG-GCA GCGCAGAATCCGCCG Rpal_4264 4586222 - 4585344 - | squalene synthase HpnC TERM 3203 4586300 - 4586261 - R 100 -24.4 -5.58454 | gap 1 TGGAGACGAAAAAAA GCGAACGGCCGCACCCGGC CGG GCCGGGCGCA-CCGTTCGC GACGCCATATAAGGG TERM 3204 4586415 - 4586396 - R 74 -12.1 -3.53012 | overlap 4586410 GCCGCGGCCTCCAAA CCGGGCC GAAACA GGCCCGG CGGACGCCGCCTCAC Rpal_4265 4586666 - 4586427 - | hypothetical protein Rpal_4266 4587056 - 4587559 + | hypothetical protein TERM 3205 4587623 - 4587586 - T 100 -21.5 -2.64099 | opp_overlap 4587591, overlap 4587566 4587591 TGCTCGCATCACAAT CAAAAGCCCTCCGGATC GGCC GATCCGGAGGGCTTTTT GTTTTCACAAGCGGA TERM 3206 4587618 - 4587591 - T 100 -21.4 -4.51174 | opp_overlap 4587591, overlap 4587566 4587586 GCATCACAATCAAAA GCCCTCCGGATC GGCC GATCCGGAGGGC TTTTTGTTTTCACAA TERM 3207 4587591 - 4587618 + T 100 -21.4 -5.45802 | opp_overlap 4587566 4587591 4587586 GCATCACAATCAAAA GCCCTCCGGATC GGCC GATCCGGAGGGC TTTTTGTTTTCACAA Rpal_4267 4590024 - 4587655 - | putative RND superfamily transporter Rpal_4268 4590999 - 4590232 - | Ethanolamine ammonia-lyase TERM 3208 4590648 - 4590682 + g 81 -12.1 -3.86346 | gap 1 CCGCAACCGGCGACA GGCCGTCGCCGATCAC CAGC GCGA-CGTCGACGGCC TTTATCGCCCCGTCC Rpal_4269 4592590 - 4591007 - | Radical SAM domain protein Rpal_4270 4594200 - 4592818 - | Ethanolamine ammonia lyase large subunit Rpal_4271 4595965 - 4594262 - | methyl-accepting chemotaxis sensory transducer Rpal_4272 4596473 - 4596018 - | Cache type 2 domain protein TERM 3209 4596456 - 4596429 - G 81 -16.2 -3.09516 | opp_overlap 4596428 4596426 4596425 4596424 CGGGGCAGCAGCGAA CGCCAGCGCGGC GGCA GCCGCGACGGCG ATCATCTTATGGCTC Rpal_4273 4597554 - 4596676 - | transglutaminase domain protein Rpal_4274 4600052 - 4597551 - | protein of unknown function DUF404 TERM 3210 4598007 - 4597962 - G 77 -14 -3.40403 | opp_overlap 4597965 4597991 GCCGTCGCAGGAGAA CTGCCG-GGCGAACCGCGCGGT GTTG ACCGCGCG-CTCGACACGGCGG CCGATCCGCAGGAAG TERM 3211 4599060 - 4599021 - G 73 -14.2 -3.14344 | gap 1, opp_overlap 4599026 4599047 CAGCGGCGGCAGGAA GCCGAGCAGCGAGCGCGCT TCG AGCACGC-CGGAGCCCGGC ATGTTGGCAACCACG Rpal_4275 4603419 - 4600078 - | transglutaminase domain protein TERM 3212 4601866 - 4601884 + g 74 -10.2 -3.78934 | overlap 4601876 GCGCCGCAGCTTCCA GCGCTCGC TGC GCCAGCGC TTCTTCTGCGCCGGC TERM 3213 4603621 - 4603655 + r 83 -16.5 -2.94099 | gap 1 ATCTCTCGTTCGTCA TTCCGGG-ATGCGCCC TCTT GGGCGCAGGCCCGGAA TCTATACTCCCGGCG Rpal_4276 4604501 - 4603725 - | HpcH/HpaI aldolase Rpal_4277 4605770 - 4604685 - | Malate/L-lactate dehydrogenase Rpal_4278 4606350 - 4605811 - | transcriptional regulator, MarR family Rpal_4279 4606596 - 4607402 + | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase Rpal_4280 4607423 - 4607821 + | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 3214 4608946 - 4608915 - g 72 -8.6 -4.07885 | gap 1, opp_overlap 4608930 GACGTCGCCCGAAAA GACGGCGCCACCATC GCG GTCGGCGGCGC-GCC CTTCGACGGCCCAGG Rpal_4281 4607814 - 4609355 + | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase TERM 3215 4609446 - 4609488 + F 76 -14.1 -3.19425 | gap 1 CCGTTTCCACGATCT CGGGATTCCGGGTTCGCGCC TAAC GGCGCGC-CCCGGAATGACG TTGCTGAACTTACTT TERM 3216 4610218 - 4610275 + G 74 -9.8 -3.81089 | gap 3 TCTCTGCGACGTGAT GGCGTCG-AGTGGCC-TGGCG-CTGGAGC GCG GCCCCGGTCGCCACGGCATCTCCAACGCC TTCTTCCTCTATGTC Rpal_4282 4609586 - 4610506 + | 3,4-dihydroxyphenylacetate 2,3-dioxygenase Rpal_4283 4610657 - 4611529 + | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase TERM 3217 4612586 - 4612554 - g 70 -8.9 -4.01603 | overlap 4612532 4612547 4612555 TATTCAAAGACGAAA GGCCGCCGCGAGGCG ATC CGCGCCGCCACGGCG AAGACGCAGCAGGAC TERM 3218 4613119 - 4613088 - g 81 -8.6 -4.56597 | gap 1 CCCGCGCTGGAAAAA GCGCTC-GCCGCCGG CGG CCCGCAGCTGATCGC GATCGACGTCCCGCG Rpal_4284 4611558 - 4613183 + | thiamine pyrophosphate domain protein TPP-binding Rpal_4285 4614462 - 4613374 - | phenylacetate-CoA oxygenase/reductase, PaaK subunit Rpal_4286 4614974 - 4614471 - | phenylacetate-CoA oxygenase, PaaJ subunit Rpal_4287 4615744 - 4614968 - | phenylacetate-CoA oxygenase, PaaI subunit TERM 3219 4615799 - 4615822 + r 93 -18.2 -3.3382 | opp_overlap 4615775 4615777 GCGGCGGGCGGTCTC CCTCTCCCCG CGCG CGGGGAGAGG TTAGTCTGTGCTCGG TERM 3220 4615885 - 4615867 - R 77 -14.6 -2.94099 | opp_overlap 4615866 GCCGCTCACTACATA TGCCCGAC TTC GTCGGGCA CTTCGTAGAACGTCG Rpal_4288 4616147 - 4615860 - | phenylacetate-CoA oxygenase, PaaH subunit Rpal_4289 4617307 - 4616321 - | phenylacetate-CoA oxygenase, PaaG subunit Rpal_4290 4617430 - 4618110 + | transcriptional regulator, TetR family TERM 3221 4618168 - 4618131 - T 70 -10.5 -3.54543 | gap 1, overlap 4618135 ACGGACTTTCCCAAA GTCATTCCGGG-GCGCGC GCA GCGCGAACCCGGAATCTC AGCAACGCAAAACAA TERM 3222 4618164 - 4618135 - T 74 -14.3 -2.64274 | gap 1, overlap 4618131 ACTTTCCCAAAGTCA TTCCGGG-GCGCGC GCA GCGCGAACCCGGAA TCTCAGCAACGCAAA TERM 3223 4618237 - 4618181 - T 100 -13.8 -4.30014 | opp_overlap 4618185, overlap 4618184 CTCAGCAACGCAAAA CAACCT-CGGGATTCCGGGTTCGCTCGC TAT GCGAGCGC-CCCGGAATGACGGAGGCTA TGCCGATGGGTTACC TERM 3224 4618234 - 4618184 - T 100 -15.5 -4.26461 | opp_overlap 4618185, overlap 4618181 AGCAACGCAAAACAA CCT-CGGGATTCCGGGTTCGCTCGC TAT GCGAGCGC-CCCGGAATGACGGAGG CTATGCCGATGGGTT TERM 3225 4618283 - 4618266 - T 100 -14.1 -5.20328 | CCCCAAAAAAAGAAA GGCCCGC GCGA GCGGGCC GAGGTCGGGAGGAAC Rpal_4291 4618847 - 4618344 - | phasin TERM 3226 4619058 - 4619022 - R 75 -11.7 -3.59023 | overlap 4619019 4619017 4619057 CGGACACAATCATAA CGTGCTGAATGTCAG CTATACC CCGACATTCAGAACG TCACGCCGATCCCTT Rpal_4292 4619379 - 4619059 - | hypothetical protein Rpal_4293 4620219 - 4619428 - | PGAP1 family protein TERM 3227 4619518 - 4619490 - G 77 -15.9 -3.03159 | overlap 4619479 CGAACGGTGTGAAGA CGCCCTCCGGCTG CGC CAGCCGGTCGGCG ATCGCCCACAGCACC TERM 3228 4620157 - 4620136 - G 75 -11.5 -3.68222 | opp_overlap 4620146 GTTGAATTCGAAGAA GCTGCGCGC CTCG GCGAGCAGC AGCGCGACGCTCGGC Rpal_4294 4620492 - 4620238 - | hypothetical protein Rpal_4295 4621836 - 4620583 - | FAD dependent oxidoreductase TERM 3229 4622092 - 4622059 - R 83 -5.1 -5.03314 | opp_overlap 4622065, overlap 4622065 CGCACGCGCAAAAAA TGAAAATGGCGGGCC GATC GGCCCGCCATTGGTT GGTCGGAATGTCCCT TERM 3230 4622086 - 4622065 - R 100 -17.3 -4.86862 | opp_overlap 4622065, overlap 4622059 CGCAAAAAATGAAAA TGGCGGGCC GATC GGCCCGCCA TTGGTTGGTCGGAAT TERM 3231 4622065 - 4622086 + r 93 -17.3 -3.40073 | opp_overlap 4622065 4622059 CGCAAAAAATGAAAA TGGCGGGCC GATC GGCCCGCCA TTGGTTGGTCGGAAT Rpal_4296 4625220 - 4622116 - | acriflavin resistance protein TERM 3232 4622348 - 4622299 - G 85 -16.3 -3.37354 | gap 1, overlap 4622288 GAGACCGATCGAGAA CCGGCTTGCCGCGCCTGCGC-CCG AAG CGGTGAGCAGCGGCAGCAGGCCGG TCACCATCGCGGCCG TERM 3233 4625357 - 4625318 - R 71 -12.6 -3.07816 | opp_overlap 4625344 4625346 GCCGGACCTATTCAA TGGCGAGCGGGCCGCGCC GAAG GGCGCAGCCGGCGCTCCG GCTATTAGTAACGCG Rpal_4297 4626555 - 4625362 - | efflux transporter, RND family, MFP subunit TERM 3234 4626348 - 4626369 + g 84 -9.3 -4.44667 | TCTTCGCCTCGGCGA CCGTCACCG TGAT CGGCGGCGG TTTGTTGTTGGCGAA TERM 3235 4626477 - 4626505 + g 77 -13.7 -3.35996 | opp_overlap 4626472 4626475 CGATGATGAACCAGC GCACCGTCCGCAC CGG GCGCGGGCGGGGC TTCTCGCTGGAGCTC Rpal_4298 4627258 - 4626557 - | transcriptional regulator, TetR family Rpal_4299 4627478 - 4628698 + | cytochrome P450 TERM 3236 4629809 - 4629799 - g 72 -8.2 -4.15222 | overlap 4629806 4629807 ACCGCGGCGAAGAAA GCGG AAA CCGC GAAGCTCGCGACCGA Rpal_4300 4628869 - 4630428 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3237 4630421 - 4630448 + T 70 -12.1 -3.14881 | gap 1, opp_overlap 4630395, overlap 4630410 AGGAGCAGCCGGGCT GGTG-GTAGCGC CTGCC GCGCTACGCACC TTCCTCCGCCGCTTC Rpal_4301 4631312 - 4630440 - | Glyoxalase/bleomycin resistance protein/dioxygenase Rpal_4302 4631647 - 4632540 + | PfkB domain protein Rpal_4303 4633861 - 4632644 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3238 4632928 - 4632974 + g 93 -18.6 -3.29144 | CGTCATACGGTTTGG CGTCGCCGGTGAGACGCGCAGC GAC GCAGCGCGCCTGATCGGTGGCG TTCTGCACCGACTCC Rpal_4304 4635470 - 4633986 - | hypothetical protein TERM 3239 4634410 - 4634366 - G 80 -15.8 -3.25823 | gap 2, opp_overlap 4634401 TCTGCGGCACACCAA CGCCGACCGAGCGTACCGTCGC GTC GCGGCGATA-GC-CGGTCAGCG CACCGGTGTTCACCT Rpal_4305 4636650 - 4635490 - | glycosyl transferase family 2 TERM 3240 4636216 - 4636239 + g 71 -14.6 -2.55351 | opp_overlap 4636213, overlap 4636215 GCCTTCGATATAGCG GCTGCCGATC ACGA GATCGGCGGC GTTGCTCTCCAGCAG Rpal_4306 4636877 - 4637683 + | protein of unknown function DUF72 Rpal_4307 4637829 - 4638086 + | hypothetical protein Rpal_4308 4638184 - 4639086 + | hypothetical protein Rpal_4309 4639699 - 4639097 - | hypothetical protein Rpal_4310 4641197 - 4640025 - | ABC-2 type transporter Rpal_4311 4642147 - 4641194 - | ABC transporter related Rpal_4312 4642947 - 4642144 - | hypothetical protein TERM 3241 4642640 - 4642677 + g 70 -9.8 -3.66178 | overlap 4642642 4642645 GCCTGAGTGCCGGAA CCGGTCTTCGACAGCG ATTGAG CGCGGTCGAAGGTCTG TTTGGCGTTGGCGAG Rpal_4313 4643660 - 4642944 - | transcriptional regulator, TetR family Rpal_4314 4644870 - 4643731 - | diguanylate cyclase Rpal_4315 4645076 - 4645252 + | hypothetical protein Rpal_4316 4645668 - 4645258 - | hypothetical protein Rpal_4317 4646113 - 4645730 - | hypothetical protein Rpal_4318 4646975 - 4646223 - | Enoyl-CoA hydratase/isomerase TERM 3242 4647874 - 4647849 - g 70 -8.9 -3.92542 | overlap 4647850 CTGATCTGGAAACAA CCTGCCGGCGC CAAG GCGGCGGCAAA GCTCGCGACGCGGCT Rpal_4319 4647075 - 4647905 + | transcriptional regulator, LysR family Rpal_4320 4649518 - 4647917 - | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase Rpal_4321 4650216 - 4649515 - | hypothetical protein TERM 3243 4650167 - 4650187 + g 73 -13.9 -3.20723 | opp_overlap 4650161 ACCACGATAGCCGGG CGCCGCGCG GCG CGCTCGGCG TTGAGTTGCTGCAGG Rpal_4322 4650573 - 4650247 - | protein of unknown function DUF182 Rpal_4323 4651829 - 4650612 - | VWA containing CoxE family protein TERM 3244 4651459 - 4651506 + g 100 -13.2 -5.06414 | gap 1, overlap 4651452 GGCATGTCGCGCGTC GCCGCCGGCGACATCGCTTCCTG CAC CCGGC-GCGAGGCCGGCGGCGGC TTTTTCTTGGCGGCG Rpal_4324 4653056 - 4652154 - | ATPase associated with various cellular activities AAA_5 Rpal_4325 4653882 - 4653076 - | molybdopterin dehydrogenase FAD-binding Rpal_4326 4654443 - 4653958 - | (2Fe-2S)-binding domain protein TERM 3245 4654380 - 4654369 - G 74 -5.8 -4.56597 | overlap 4654371 GTTCTCGCGCAAAAA CTGC ACCA GCAG CGTGCGCGGATCGAC Rpal_4327 4655083 - 4654619 - | carbon monoxide dehydrogenase subunit G TERM 3246 4655246 - 4655222 - R 74 -13.5 -2.87132 | GCGGCGGCTGAGATA GGTAGCGCCCG GGC CGGGCGCCAGC GTCAAGCCATCACGA Rpal_4328 4655803 - 4655276 - | hypothetical protein TERM 3247 4656049 - 4656014 - R 100 -14.6 -4.22652 | opp_overlap 4656018, overlap 4656015 4656022 CGACACCATCGAAAA TGCCGAAAGCCCCGCC GTGG GGCGGGGCTCCCTGCT GTCGCTTCGCGACGC TERM 3248 4656048 - 4656015 - R 91 -18.1 -3.13109 | opp_overlap 4656018, overlap 4656014 4656022 GACACCATCGAAAAT GCCGAAAGCCCCGCC GTGG GGCGGGGCTCCCTGC TGTCGCTTCGCGACG TERM 3249 4656041 - 4656022 - R 91 -16.4 -3.66666 | opp_overlap 4656018, overlap 4656015 4656014 TCGAAAATGCCGAAA GCCCCGCC GTGG GGCGGGGC TCCCTGCTGTCGCTT Rpal_4329 4656297 - 4656103 - | hypothetical protein Rpal_4330 4656637 - 4657554 + | inner-membrane translocator TERM 3250 4657597 - 4657625 + G 79 -11 -3.92324 | overlap 4657602 CACGCCGCTGCTGCC CCGGTCGCCG-CCG CCA CGGTCGGCG-TCGG TTTCATCTTCAAGAA TERM 3251 4657649 - 4657669 + G 100 -10.4 -5.10933 | opp_overlap 4657642, overlap 4657650 TCAAGAAAGCCCTGA TCAGCGCC CTCGT GGCGCTGG TTTTATTTTCGCTGA TERM 3252 4657650 - 4657668 + G 75 -11.7 -3.65475 | opp_overlap 4657642, overlap 4657649 CAAGAAAGCCCTGAT CAGCGCC CTCGT GGCGCTG GTTTTATTTTCGCTG Rpal_4331 4657567 - 4658898 + | inner-membrane translocator Rpal_4332 4658895 - 4659731 + | ABC transporter related TERM 3253 4660006 - 4660024 + G 72 -8.2 -4.07568 | overlap 4659974 AATGGCGCCGGCAAG TCGACATT GAT GATGTCGA TTTTCGGCAAGCCGC Rpal_4333 4659868 - 4660608 + | ABC transporter related Rpal_4334 4660787 - 4661893 + | Extracellular ligand-binding receptor TERM 3254 4661966 - 4661937 - T 86 -15.8 -3.64487 | gap 1 TCACACCGGCAACAA CGGCATGCGCGGG CTCGC CCCGCGCAT-CCG CTCACGGACAAAGAA TERM 3255 4662105 - 4662076 - T 73 -7.1 -4.27117 | gap 1, overlap 4662077 CCTCCACAAGACAAA CGTCATGCGCGGGC TTG ACCCGCGCATC-CA TCAACGAATGATTTC Rpal_4335 4662393 - 4662106 - | Excinuclease ABC C subunit domain protein Rpal_4336 4663633 - 4662464 - | Integrase catalytic region TERM 3256 4662678 - 4662697 + g 76 -8.6 -4.27117 | gap 1 TTGGTTTTCGGGACG GAGCG-GAC GAT GTCGCGCTC TTTGTATTCTGGAGC Rpal_4337 4664672 - 4663938 - | cytochrome c biogenesis protein transmembrane region Rpal_4338 4664819 - 4665823 + | peptidase S58 DmpA Rpal_4339 4666734 - 4665964 - | putative signal transduction protein with EFhand domain TERM 3257 4667678 - 4667651 - g 70 -11.4 -3.42013 | gap 1, overlap 4667654 AGCTTACAAGACCAA CATCGCCGGCATC CGC AATGCC-GCGATG CAGGCGCGGGGGGAA Rpal_4340 4667004 - 4667702 + | Ribulose-phosphate 3-epimerase TERM 3258 4667713 - 4667742 + T 86 -17.9 -2.52464 | overlap 4667716 CTTAAGTTGGTCTGA CGAGCCGCAAGCC CGGC GGCTTTCGGCTCG TGGGTTCGAGGCCAA Rpal_4341 4668337 - 4667699 - | hypothetical protein TERM 3259 4668991 - 4668960 - g 72 -13 -3.14564 | gap 1, overlap 4668935 GCACGGCCGGATCAA GCC-TGCCGCCGGCG GTC CACCGGCGACACAGC GGTTCGAGATGCCGG Rpal_4342 4668607 - 4669776 + | Integrase catalytic region Rpal_4343 4670249 - 4671556 + | adenylosuccinate lyase TERM 3260 4671609 - 4671591 - T 100 -13.1 -5.06414 | opp_overlap 4671591 GTCGCTCAACAAAAA GCCCCCG GTTCG CGGGGGC TTTTTTCATGGCTGC TERM 3261 4671591 - 4671609 + T 100 -13.1 -5.1675 | opp_overlap 4671591 GTCGCTCAACAAAAA GCCCCCG GTTCG CGGGGGC TTTTTTCATGGCTGC TERM 3262 4671664 - 4671647 - T 78 -9.8 -3.98282 | CTGATACGAACGAAA CCGGCC GCGGAT GGCCGG GACAAAGCCCGGCCA Rpal_4344 4672408 - 4671707 - | phosphoribosylformylglycinamidine synthase I TERM 3263 4672273 - 4672256 - G 75 -6.9 -4.3467 | ATCGCCATAGGAAAA GCCGCCG GGCA CGACGAC GAGGTCGGTACCCTT Rpal_4345 4672704 - 4672465 - | hypothetical protein Rpal_4346 4672973 - 4672728 - | phosphoribosylformylglycinamidine synthase, purS TERM 3264 4673020 - 4673072 + r 73 -11.2 -3.56558 | gap 1, opp_overlap 4673052 4673057, overlap 4673001 GCGCAAGCCTCGCCC CGTTGGTCATTCCGGG-GCGCTCGC GCAA GCGAGCGAACCCGGAATCTCGATCG TTCTATAACTTCTGG TERM 3265 4673100 - 4673052 - R 71 -14 -2.52464 | gap 1, opp_overlap 4673020, overlap 4673057 4673081 CGCTCGCGCAAGCGA GCGAACCCGGAATCTCGATCGTT CTAT AACT-TCTGGATTCCGGGTTCGC CGCTGCGCGGCGCCC Rpal_4347 4673953 - 4673156 - | phosphoribosylaminoimidazole-succinocarboxamide synthase Rpal_4348 4674222 - 4674545 + | protein of unknown function DUF1476 TERM 3266 4674596 - 4674628 + F 100 -14.2 -4.13945 | opp_overlap 4674602, overlap 4674598 4674602 TTGCCTGATCGAATT TTCAAATGCCCGGG CCTGT CCCGGGCATTTGTG TTTTCCGCTGCAGGT TERM 3267 4674598 - 4674626 + F 100 -19 -3.6692 | opp_overlap 4674602, overlap 4674596 4674602 GCCTGATCGAATTTT CAAATGCCCGGG CCTGT CCCGGGCATTTG TGTTTTCCGCTGCAG TERM 3268 4674622 - 4674602 - f 81 -14 -3.61268 | opp_overlap 4674598 4674596 4674602 GATCGAATTTTCAAA TGCCCGGG CCTGT CCCGGGCA TTTGTGTTTTCCGCT TERM 3269 4674602 - 4674622 + F 100 -14 -4.45771 | opp_overlap 4674602, overlap 4674598 4674596 GATCGAATTTTCAAA TGCCCGGG CCTGT CCCGGGCA TTTGTGTTTTCCGCT TERM 3270 4675506 - 4675465 - g 71 -9.3 -3.78953 | gap 1 ATGCTCAGCAGCAAA CTGCAGCAGCTCGCCGAACG CTA CGC-CGACGAGCTGTGGCGG GCGCCGTCGGTCGAT TERM 3271 4675592 - 4675579 - g 73 -9.5 -3.91897 | overlap 4675560 4675559 CGGCTCACCCAGAAA GGGCG CGGC CGCCC TGGCAAACCCGGCCC Rpal_4349 4675117 - 4675791 + | hypothetical protein Rpal_4350 4676495 - 4676145 - | transcriptional regulator TERM 3272 4676173 - 4676190 + g 93 -10.5 -4.60487 | overlap 4676167 ACGCTGATCCGCGCC GCCGCGC GCGA GCGTGGC TTTTTGCGGATGATA Rpal_4351 4676859 - 4676476 - | protein of unknown function DUF891 Rpal_4352 4677786 - 4676968 - | hypothetical protein Rpal_4353 4678486 - 4678103 - | hypothetical protein Rpal_4354 4678782 - 4679021 + | hypothetical protein Rpal_4355 4680234 - 4679620 - | hypothetical protein Rpal_4356 4680996 - 4680442 - | hypothetical protein Rpal_4357 4681549 - 4681067 - | GreA/GreB family elongation factor Rpal_4358 4682143 - 4681610 - | uracil-DNA glycosylase superfamily Rpal_4359 4682545 - 4682144 - | hypothetical protein TERM 3273 4682273 - 4682303 + g 73 -13.3 -3.25942 | opp_overlap 4682270 CTCCGGATTGAAGGC GCTG-CCGGCCCAGG CAT CC-GGGCCGGTCGGC TTCATGTCGAAGAAT TERM 3274 4682521 - 4682544 + g 75 -3 -4.72272 | overlap 4682522 CAGCGCCGAACGCGC GGCGACGGAT CGAG AGCTGTCGCA TTTTTCCTCCCCCCA Rpal_4360 4683633 - 4682617 - | diguanylate cyclase with PAS/PAC sensor Rpal_4361 4685013 - 4683814 - | RNA methyltransferase, TrmH family, group 1 TERM 3275 4685062 - 4685033 - H 74 -5 -4.57341 | gap 2, overlap 4685034 4685035 AAGGTCTTTCAAAAA CGGGCGCCCTCGGA GTGA TCCGAGG-CGGC-G CTGGAGGATCGGGGG Rpal_4362 4685404 - 4686627 + | isocitrate dehydrogenase, NADP-dependent TERM 3276 4686656 - 4686678 + F 100 -16.3 -5.33405 | opp_overlap 4686656 ACTGAACGAACGAAA GGCGCGGGA TCACT TCCCGCGCC TTTTTCTTTGCTGCC TERM 3277 4686678 - 4686656 - f 100 -16.3 -4.0075 | opp_overlap 4686656 ACTGAACGAACGAAA GGCGCGGGA TCACT TCCCGCGCC TTTTTCTTTGCTGCC Rpal_4363 4686758 - 4687090 + | protein of unknown function UPF0060 Rpal_4364 4687260 - 4688099 + | transcriptional regulator, AraC family Rpal_4365 4688240 - 4690549 + | TonB-dependent siderophore receptor Rpal_4366 4690570 - 4691100 + | hypothetical protein TERM 3278 4691391 - 4691437 + G 79 -16.5 -3.07787 | gap 1, opp_overlap 4691372, overlap 4691373 4691399 4691428 CCGGGTGCGGGATTC CTGCCCGGCGACGCGGCGATCG TATT CGGTCGCC-TGCCGCCGGGCGA TCTTGGCGTGGTGTT Rpal_4367 4691097 - 4692209 + | PepSY-associated TM helix domain protein Rpal_4368 4693990 - 4692239 - | potassium efflux system protein TERM 3279 4692918 - 4692867 - G 86 -18 -2.82516 | gap 1 CCGGCCAGCACCAGA TCGCGGCCGCGCTCCGGCATCAGCC CGA GGCTGACGCC-GAGCCCGGCGAGGA TGAAAGAGAACTCGC TERM 3280 4693936 - 4693920 - G 72 -7.2 -4.29176 | ACACCGAAGGCAAAA GCCAGC ACCAA GCCGGC CACGATGGTGGAAAT TERM 3281 4694722 - 4694762 + G 74 -10.1 -3.76125 | overlap 4694735 GTTCGGCAAGGCGGC CGGCGATGCGGCGGGCGGC GGC GCGGCCAGCACCGGCGCCG TTTGGCTTGGGCTCG Rpal_4369 4694156 - 4695934 + | sodium/hydrogen exchanger TERM 3282 4697443 - 4697409 - g 70 -8.4 -3.9243 | overlap 4697410 CAATTTCTCAAAGAA CGGTCGCTGTCGTCGT ATT ACGACGACGTCGCCCT GAAAGGCCTGCAACT Rpal_4370 4696164 - 4698122 + | protein of unknown function UPF0118 Rpal_4371 4698980 - 4698219 - | GCN5-related N-acetyltransferase Rpal_4372 4701651 - 4698982 - | alanyl-tRNA synthetase TERM 3283 4703162 - 4703172 + G 79 -6.8 -4.57569 | CGCGCTGACTGCGCG CGAC ACC GTCG TTTTTGCCGAAGTAC Rpal_4373 4702104 - 4703252 + | glycine cleavage system T protein Rpal_4374 4703262 - 4703627 + | glycine cleavage system H protein Rpal_4375 4703795 - 4706701 + | glycine dehydrogenase TERM 3284 4706766 - 4706732 - T 81 -13.4 -3.57263 | opp_overlap 4706745, overlap 4706734 ACGTCGACGCTTAAA GACTGCGGCAGCCTGC GCG GCGGACTGCCGCCGGC AGCATCTCTGCAACG TERM 3285 4706764 - 4706734 - T 82 -14.6 -3.36515 | opp_overlap 4706745, overlap 4706732 GTCGACGCTTAAAGA CTGCGGCAGCCTGC GCG GCGGACTGCCGCCG GCAGCATCTCTGCAA Rpal_4376 4708238 - 4707147 - | recA protein Rpal_4377 4710422 - 4708497 - | outer membrane autotransporter barrel domain protein TERM 3286 4709790 - 4709745 - G 70 -10.9 -3.53563 | gap 1, opp_overlap 4709780, overlap 4709733 4709731 ATAGGTGTGGGCAAA GGCGTC-GCGGGCGGCGTCGCC GAT GGCCCCACCGCCCTCCGGCACC GGGAAGTACTTGGAA Rpal_4378 4710940 - 4711170 + | hypothetical protein Rpal_4379 4711376 - 4711188 - | hypothetical protein Rpal_4380 4711670 - 4711816 + | hypothetical protein TERM 3287 4711920 - 4711956 + F 100 -10.2 -5.28176 | gap 1, overlap 4711912 4711922 GAGTTTCGACCGTGA C-CGGAGCCCCGAAC ACGGCCTC GTTCGGGGCTCCTTG TTTTTTGTGGGTGGA TERM 3288 4711922 - 4711953 + F 100 -17.4 -4.73105 | overlap 4711912 4711920 GTTTCGACCGTGACC GGAGCCCCGAAC ACGGCCTC GTTCGGGGCTCC TTGTTTTTTGTGGGT Rpal_4381 4712199 - 4712585 + | hypothetical protein TERM 3289 4712648 - 4712606 - f 84 -14 -3.7791 | opp_overlap 4712615, overlap 4712607 4712609 CAAGGATTGAGCAAA CCAGCACAGGCCGCCGGCGT CCG ACGTCGGCGGCTTTTGCCGT TCAGGATCAGCGGCT TERM 3290 4712647 - 4712607 - f 87 -17.5 -2.86264 | opp_overlap 4712615, overlap 4712606 4712609 AAGGATTGAGCAAAC CAGCACAGGCCGCCGGCGT CCG ACGTCGGCGGCTTTTGCCG TTCAGGATCAGCGGC TERM 3291 4712645 - 4712609 - f 84 -16.5 -2.97667 | opp_overlap 4712615, overlap 4712607 4712606 GGATTGAGCAAACCA GCACAGGCCGCCGGCGT CCG ACGTCGGCGGCTTTTGC CGTTCAGGATCAGCG TERM 3292 4712615 - 4712639 + F 100 -19.3 -4.19238 | opp_overlap 4712609 4712607 4712606 AGCAAACCAGCACAG GCCGCCGGCGT CCG ACGTCGGCGGC TTTTGCCGTTCAGGA Rpal_4382 4712843 - 4713019 + | hypothetical protein TERM 3293 4713044 - 4713017 - T 85 -6.1 -4.96501 | opp_overlap 4713018, overlap 4713019 GGCGACAAAAAGAAA TAGCCGGCGCG CAAGCT CGCGCCGCCCT GTTGGGCGTCGCGCA TERM 3294 4713042 - 4713019 - T 82 -10.9 -4.09508 | opp_overlap 4713018, overlap 4713017 CGACAAAAAGAAATA GCCGGCGCG CAAGCT CGCGCCGCC CTGTTGGGCGTCGCG Rpal_4383 4713760 - 4713095 - | transcriptional regulator, Crp/Fnr family TERM 3295 4713437 - 4713485 + g 82 -17.5 -3.01924 | CATCGCCGGCTCGCG CTGCAGCGTCGCCATCATCGTCG CAT TGGTGATGCTGGTGACGGTGCAG TCTTCGAGCGCAATC Rpal_4384 4714187 - 4713921 - | hypothetical protein Rpal_4385 4714356 - 4714228 - | hypothetical protein Rpal_4386 4714485 - 4714946 + | thioesterase superfamily protein Rpal_4387 4716458 - 4715001 - | peptidase C14 caspase catalytic subunit p20 Rpal_4388 4716682 - 4717842 + | hypothetical protein Rpal_4389 4718508 - 4717843 - | DSBA oxidoreductase Rpal_4390 4719402 - 4718581 - | transcriptional regulator, XRE family TERM 3296 4718786 - 4718743 - G 77 -11.1 -3.8377 | gap 3, opp_overlap 4718762 AAGCCGCAGACGAAA CGGCACCGCAACCGCATCCGGT GCA ATCGG-TGCGG-CGCG-TGCCG GCACCGGATAGGTCC TERM 3297 4719836 - 4719859 + G 82 -4.5 -4.93296 | overlap 4719839 TGCTCAGCGGCATGG TCGCGCCGA ATGCGC TCGGCGTTA TTTTTGTGCTGATAC TERM 3298 4719839 - 4719856 + G 81 -8.4 -4.56153 | overlap 4719836 TCAGCGGCATGGTCG CGCCGA ATGCGC TCGGCG TTATTTTTGTGCTGA Rpal_4391 4719538 - 4719951 + | putative integral membrane protein Rpal_4392 4720811 - 4720074 - | nuclear protein SET Rpal_4393 4720953 - 4721582 + | hypothetical protein Rpal_4394 4721732 - 4722325 + | hypothetical protein Rpal_4395 4723043 - 4722333 - | NHL repeat containing protein Rpal_4396 4723303 - 4723599 + | putative exported protein of unknown function TERM 3299 4723632 - 4723686 + T 71 -10.8 -3.41878 | gap 3, overlap 4723606 4723634 GCAGCGCACCTGCCC CA-AGCGGTGATTCCGGG-GCGCTCGC GTCA GCGAGCGAGCCCGGAATC-CCGAGATG TTCTGCGTTGAACCG TERM 3300 4723634 - 4723683 + T 71 -13.6 -2.56539 | overlap 4723606 4723632 AGCGCACCTGCCCCA AGCGGTGATTCCGGG-GCGCTCGC GTCA GCGAGCGAGCCCGGAATC-CCGAG ATGTTCTGCGTTGAA Rpal_4397 4725446 - 4723791 - | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit Rpal_4398 4725837 - 4725553 - | addiction module toxin, RelE/StbE family Rpal_4399 4726067 - 4725834 - | hypothetical protein Rpal_4400 4726192 - 4726686 + | hypothetical protein TERM 3301 4726768 - 4726741 - f 85 -15 -3.55444 | gap 1 GTCCCACGGTCCAAA GC-CCGGCATTTG AAG CAAATGCCGGCGC AGGGGTGCGCGCAAA Rpal_4401 4726903 - 4727073 + | hypothetical protein TERM 3302 4727108 - 4727126 + F 81 -13.1 -3.74749 | opp_overlap 4727102, overlap 4727102 TCCGAACGACGACTG GCCCCGC CTTGC GCGGGGC TTTGGCGTTTGTGCT Rpal_4402 4727217 - 4727576 + | glutathione-dependent formaldehyde-activating GFA TERM 3303 4727676 - 4727621 - T 93 -17 -3.53012 | gap 1, opp_overlap 4727594 4727591 4727621, overlap 4727594 4727589 4727662 GGGGCGCGCGTGAAA CGCGCGAACCCGGAATCTCGAAGTG GTGTGCT CGGATC-AGATTCCGGGTTCGCGCG TTTCACGCGCGCCCC TERM 3304 4727621 - 4727676 + T 100 -19.9 -3.53012 | gap 1, opp_overlap 4727594 4727589 4727621 4727662, overlap 4727594 4727591 GGGGCGCGCGTGAAA CGCGCGAACCCGGAATCTCGAAGTGG TGTGC TCGGATC-AGATTCCGGGTTCGCGCG TTTCACGCGCGCCCC TERM 3305 4727695 - 4727662 - T 84 -17.5 -2.78384 | gap 1, opp_overlap 4727621, overlap 4727621 TGTGCTCGGATCAGA TTCCGGGTTCGCGCGT TTC ACGCGCGC-CCCGGAA TGACCTCGCAGAGAG Rpal_4403 4728444 - 4727734 - | Glutathione S-transferase domain TERM 3306 4728513 - 4728535 + r 93 -20.6 -3.10164 | opp_overlap 4728513 GAGCCTAACAAAAAA GCGCCGCGGA AGG TCCGCGGCGC TTCGATGCTGGATCG TERM 3307 4728535 - 4728513 - R 100 -20.6 -5.46657 | opp_overlap 4728513 GAGCCTAACAAAAAA GCGCCGCGGA AGG TCCGCGGCGC TTCGATGCTGGATCG Rpal_4404 4729578 - 4728565 - | import inner membrane translocase subunit Tim44 Rpal_4405 4732559 - 4729917 - | multi-sensor hybrid histidine kinase TERM 3308 4730225 - 4730252 + g 77 -11.2 -3.82084 | gap 1 AGCCGCGCGAGCGCA GGCC-GCGGGCGT TGA GCGACCGCAGGCC TTCTTCGTCTTCGAC TERM 3309 4730888 - 4730940 + g 75 -14.3 -3.28416 | gap 3, opp_overlap 4730895, overlap 4730892 4730895 GCAGTGTTTGTTTGC GCGAGAACGCCAGCAGCTGCCGC-AC CAAG GTCGCGGC-GCGGGTGGCGTTCT-GC TTGATCTGCATGATG TERM 3310 4730892 - 4730937 + g 73 -14.8 -2.82023 | opp_overlap 4730895, overlap 4730888 4730895 TGTTTGTTTGCGCGA GAACGCCAGCAGCTGCCGC-AC CAAG GTCGCGGC-GCGGGTGGCGTTC TGCTTGATCTGCATG TERM 3311 4730895 - 4730934 + g 70 -10.7 -3.55487 | opp_overlap 4730895, overlap 4730892 4730888 TTGTTTGCGCGAGAA CGCCAGCAGCTGCCGC-AC CAAG GTCGCGGC-GCGGGTGGCG TTCTGCTTGATCTGC TERM 3312 4731578 - 4731597 + g 71 -2.7 -4.62783 | opp_overlap 4731569, overlap 4731571 GATACAGCCGCACCG GCACGGT CTGGCC GCCGCGC TTTTTCAGGTCGATG TERM 3313 4732413 - 4732460 + g 71 -9.6 -3.78124 | gap 1, opp_overlap 4732408, overlap 4732412 CAGCGCAATACTGCC GCCGCGGC-GGGCCGGCTCCGGC GAC GCCGGACGCGGCTCGGGCGAAGC TTGTTGATCGTTGAT Rpal_4406 4733742 - 4732669 - | flagellar biosynthetic protein FlhB TERM 3314 4733453 - 4733421 - G 80 -17.1 -2.70932 | GCCGGTGCTGAATCA TGTTGCTGGCGATCG CCA CGATCACCAGCATCA ACAGCGGAATGCCGA Rpal_4407 4734536 - 4733769 - | flagellar biosynthetic protein FliR Rpal_4408 4734906 - 4734643 - | export protein FliQ family 3 Rpal_4409 4735372 - 4735067 - | flagellar hook-basal body complex protein FliE Rpal_4410 4735833 - 4735408 - | flagellar basal-body rod protein FlgC Rpal_4411 4736262 - 4735855 - | flagellar basal body rod protein FlgB Rpal_4412 4736582 - 4737739 + | putative exported protein of unknown function Rpal_4413 4737736 - 4738500 + | flagellar biosynthetic protein FliP Rpal_4414 4742398 - 4738670 - | tetratricopeptide TPR_4 protein TERM 3315 4739459 - 4739418 - G 70 -8.5 -3.91911 | gap 1 TCGACGGCAACCAAA CGGTCGGCAAGCCGGCG-GA TCA TCTCGTCGCCGCGCCGGCCG ATCGGCGTCAGCTCG TERM 3316 4742572 - 4742540 - H 76 -6.9 -4.40804 | opp_overlap 4742567 CACTAGGGCACAAAA GCCGTTAACGGTGGT TTA ACCATCGTCGACTGC GGCAGGCTTGCATGC Rpal_4415 4742875 - 4743204 + | hypothetical protein Rpal_4416 4744757 - 4743234 - | Carboxylesterase type B TERM 3317 4744442 - 4744413 - G 74 -7.8 -4.20084 | opp_overlap 4744440, overlap 4744414 ACCACCGACCGAAAA GCCGCCGCCGTA GATCCA TACGACGACGGG GCGAAGGTTGCCGCT Rpal_4417 4745406 - 4744783 - | transcriptional regulator, TetR family TERM 3318 4745455 - 4745480 + r 72 -13.5 -2.71712 | opp_overlap 4745459, overlap 4745454 GTAACAGATCAGCCA TTAATGCAACG ACAC CGTTGCATTAA ATTTCGACAAACCAA Rpal_4418 4746348 - 4745584 - | conserved hypothetical protein; putative signal peptide TERM 3319 4745658 - 4745672 + g 72 -11.4 -3.55563 | CCGACGCCTTCCCGG TGGCGC GCC GCGCCA TTTCAACGGTGAGCT Rpal_4419 4746773 - 4746345 - | hypothetical protein TERM 3320 4746533 - 4746558 + g 73 -5.9 -4.42238 | overlap 4746534 GGTCGGAGAGCGCGG ACGCGGCGGCG ATGT CGCGGCCGAGG TTTTCGTTGACCTCG Rpal_4420 4747972 - 4746770 - | flagellar motor switch protein FliM TERM 3321 4747612 - 4747644 + g 72 -12 -3.55444 | opp_overlap 4747622 AGTTGCGCAAGCTGG TCGTCATCAACCGC ACCAG GCGGTCGAAGACGA TTTCGAGCATCGGCA Rpal_4421 4748479 - 4747979 - | flagellar basal body-associated protein FliL TERM 3322 4748397 - 4748352 - G 72 -5.1 -4.33153 | overlap 4748355 4748356 GCGAACAGGAAGAAA TAAGCGCCACCGCCGCCCAGC AGCA GCACGGCCGCCGCGGCGATGA TGATGATCAGCTTCT TERM 3323 4748394 - 4748355 - G 72 -6.8 -4.26924 | overlap 4748352 4748356 AACAGGAAGAAATAA GCGCCACCGCCGCCCAGC AGCA GCACGGCCGCCGCGGCGA TGATGATGATCAGCT Rpal_4422 4748844 - 4749605 + | flagellar basal body rod protein Rpal_4423 4749618 - 4750406 + | flagellar basal-body rod protein FlgG Rpal_4424 4750419 - 4751447 + | flagella basal body P-ring formation protein FlgA Rpal_4425 4751453 - 4752211 + | flagellar L-ring protein TERM 3324 4752374 - 4752342 - T 100 -19.2 -4.28548 | AGCGACTTACCAAAA CGTGGATGCCCGGG ACGAG CCCGGGCATCCAGG AGCTCACAGCACCTA Rpal_4426 4755539 - 4752387 - | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family Rpal_4427 4756736 - 4755552 - | efflux transporter, RND family, MFP subunit TERM 3325 4757322 - 4757311 - g 79 -2.2 -4.99861 | gap 1, overlap 4757313 GACGAAGTATAAAAA GACCG ACT CGG-C GCCGGCATTGGAGAT Rpal_4428 4756892 - 4757455 + | transcriptional regulator, TetR family Rpal_4429 4757651 - 4757932 + | hypothetical protein TERM 3326 4758020 - 4757985 - T 100 -17.6 -4.7497 | opp_overlap 4757982, overlap 4757988 GCCAGCTACCAAAAA CAACGGCGCCGCTTCC TCTC GGAAGCGACGCCGTAA AACTTCGATCAGGCC TERM 3327 4758017 - 4757988 - T 100 -21.5 -4.4831 | opp_overlap 4757982, overlap 4757985 AGCTACCAAAAACAA CGGCGCCGCTTCC TCTC GGAAGCGACGCCG TAAAACTTCGATCAG Rpal_4430 4758470 - 4758042 - | transcriptional regulator, TraR/DksA family Rpal_4431 4759001 - 4758591 - | flagellar assembly regulator FliX TERM 3328 4759693 - 4759671 - g 73 -11.2 -3.65046 | GGGCGACGCCAAGAA CCTGCAGGGC GGC ACCCTGCTGG TCACCCCCCTCCTCG Rpal_4432 4759300 - 4760421 + | flagellar P-ring protein Rpal_4433 4760421 - 4760756 + | chemotactic signal-response protein CheL Rpal_4434 4760774 - 4761265 + | hypothetical protein Rpal_4435 4761446 - 4761817 + | hypothetical protein Rpal_4436 4762302 - 4761934 - | flagellar FlaF family protein Rpal_4437 4762686 - 4762306 - | flagellar FlbT family protein Rpal_4438 4765562 - 4762902 - | protein of unknown function DUF1522 TERM 3329 4764024 - 4764063 + g 70 -9.8 -3.63991 | opp_overlap 4764019 CTCGACATGACCACT CACGCCGGTGTGGGTCGC CGAG GCGAGCGGCACCGGGGCG TTCTTGAAGGTGATA TERM 3330 4767495 - 4767521 + G 73 -5.9 -4.36914 | CTGCTCGGAGACCCG GTGGCGATC CCGGTCGAA GATCGTCAC TTTTATGCCGAAGCG Rpal_4439 4766085 - 4768232 + | Tetratricopeptide TPR_4 Rpal_4440 4770048 - 4768246 - | thiamine pyrophosphate protein TPP binding domain protein Rpal_4441 4770878 - 4770072 - | short-chain dehydrogenase/reductase SDR Rpal_4442 4771795 - 4770875 - | Nucleotidyl transferase Rpal_4443 4773276 - 4771792 - | cytidyltransferase-related domain protein TERM 3331 4773216 - 4773228 + g 100 -10.5 -5.45726 | opp_overlap 4773208, overlap 4773207 CGAAAACGATGCTGC GCCGG CGT CCGGC TTTTTTTCGGATATC Rpal_4444 4774337 - 4773282 - | Alcohol dehydrogenase zinc-binding domain protein TERM 3332 4773707 - 4773727 + g 80 -9 -4.19238 | gap 1 CGTCGATCACCGTCG TGGCG-CCG AGCT CGGTCGCCA TTTTCAGCTTGGCGG TERM 3333 4774436 - 4774389 - R 100 -27.2 -3.06183 | opp_overlap 4774394 4774398, overlap 4774394 4774398 GTCACTGCGAGCGAA GCGAAGCAATCCAGGGGCTCCG TGCA CTGAGCCCCTGGATTGCTTCGT CGGCTTCGCCTCCTC TERM 3334 4774431 - 4774394 - R 100 -24.3 -3.19192 | opp_overlap 4774394 4774398, overlap 4774389 4774398 TGCGAGCGAAGCGAA GCAATCCAGGGGCTCCG TGCA CTGAGCCCCTGGATTGC TTCGTCGGCTTCGCC TERM 3335 4774394 - 4774431 + r 100 -24.3 -3.18681 | opp_overlap 4774389 4774394 4774398, overlap 4774398 TGCGAGCGAAGCGAA GCAATCCAGGGGCTCCG TGCA CTGAGCCCCTGGATTGC TTCGTCGGCTTCGCC TERM 3336 4774398 - 4774427 + r 95 -17.9 -3.40639 | opp_overlap 4774394 4774389 4774398, overlap 4774394 AGCGAAGCGAAGCAA TCCAGGGGCTCCG TGCA CTGAGCCCCTGGA TTGCTTCGTCGGCTT TERM 3337 4774427 - 4774398 - R 95 -17.9 -3.40788 | opp_overlap 4774398 4774394, overlap 4774394 4774389 AGCGAAGCGAAGCAA TCCAGGGGCTCCG TGCA CTGAGCCCCTGGA TTGCTTCGTCGGCTT Rpal_4445 4775540 - 4774488 - | Transketolase central region Rpal_4446 4776528 - 4775551 - | dehydrogenase E1 component Rpal_4447 4777184 - 4776525 - | Methyltransferase type 11 Rpal_4448 4778230 - 4777193 - | NAD-dependent epimerase/dehydratase Rpal_4449 4779165 - 4778227 - | NAD-dependent epimerase/dehydratase Rpal_4450 4779975 - 4779307 - | sugar isomerase (SIS) Rpal_4451 4781018 - 4780098 - | methyltransferase FkbM family TERM 3338 4780189 - 4780206 + g 76 -8.3 -4.18197 | opp_overlap 4780164, overlap 4780191 TCGGCCAGCGTCTCC GCCCGGC GCCA GCCGGTC TTTTGGGTGAACAGT TERM 3339 4780515 - 4780557 + g 70 -13.3 -3.0792 | gap 1, overlap 4780513 CGCCTCACCCGCTTG CGCCGACACCGCCG-CCTCG TTGA CGCGGACGGTGGTGACGCCG TTGGCTCGCATATTG TERM 3340 4780663 - 4780701 + g 78 -15.2 -3.31144 | overlap 4780664 CTGTGCAGACCGATA TTGCCGCCGATGTCGGCG ACG CGCCGATACCGGCCGCGG TTCTGCCAGTAGAAC TERM 3341 4780664 - 4780700 + g 77 -16.5 -2.58544 | overlap 4780663 TGTGCAGACCGATAT TGCCGCCGATGTCGGCG ACG CGCCGATACCGGCCGCG GTTCTGCCAGTAGAA TERM 3342 4781114 - 4781153 + r 78 -12 -3.74693 | opp_overlap 4781118 4781122, overlap 4781122 GCAGCAGCCGGAGCA GAAAGAAAGGCGGCGGGG TCGC CCCCGCCGCCTTCCGTCG TTTGATCAGCTACGC TERM 3343 4781149 - 4781118 - R 100 -23.8 -3.96624 | opp_overlap 4781114 4781122, overlap 4781122 CAGCCGGAGCAGAAA GAAAGGCGGCGGGG TCGC CCCCGCCGCCTTCC GTCGTTTGATCAGCT TERM 3344 4781122 - 4781145 + r 95 -21 -3.17054 | opp_overlap 4781118 4781122, overlap 4781114 CGGAGCAGAAAGAAA GGCGGCGGGG TCGC CCCCGCCGCC TTCCGTCGTTTGATC TERM 3345 4781145 - 4781122 - R 100 -21 -4.59342 | opp_overlap 4781122 4781114, overlap 4781118 CGGAGCAGAAAGAAA GGCGGCGGGG TCGC CCCCGCCGCC TTCCGTCGTTTGATC Rpal_4452 4783840 - 4781174 - | protein of unknown function DUF1522 Rpal_4453 4785755 - 4784148 - | hypothetical protein TERM 3346 4784578 - 4784613 + g 73 -13.3 -3.28924 | gap 1 TTGGCAACCGCGGTG CCGCGGGCCGGA-TCG CTCGC CGAGTCCGGCTCGCCG TTGTACCAGAAGATC TERM 3347 4785275 - 4785297 + g 78 -14.8 -3.29381 | TCACCTGCTTCAGCC CGGCGACCGC CGC GCCGTCGCCG TTCATGATCTTGTCG Rpal_4454 4787635 - 4785764 - | flagellar hook-associated protein FlgK TERM 3348 4786289 - 4786265 - G 70 -13.5 -3.05384 | overlap 4786267 GCCGTTGTCATTGAA CAGCGGTACCG ATG CGGTGCCGCCG GTCAGCGACGTCTCG Rpal_4455 4789470 - 4787674 - | protein of unknown function DUF1078 domain protein TERM 3349 4792426 - 4792416 - g 79 -8.2 -4.35885 | ACCGAGCAGAAGAAA GCCG AGG CGGC GCTACGCGACATCAA Rpal_4456 4789740 - 4793987 + | PAS/PAC sensor hybrid histidine kinase Rpal_4457 4794177 - 4794449 + | hypothetical protein Rpal_4458 4795979 - 4794486 - | hypothetical protein Rpal_4459 4796628 - 4796131 - | methionine-R-sulfoxide reductase TERM 3350 4796782 - 4796745 - R 74 -13.3 -3.29263 | overlap 4796766 ACATTGTCGCGAGAA CGCCGACGCTGCCGGAA GCTA TTCCGGCGAGGGCGGCG GCACCGGACGGCGCG Rpal_4460 4798223 - 4796763 - | FAD dependent oxidoreductase Rpal_4461 4798364 - 4798894 + | putative phosphohistidine phosphatase, SixA Rpal_4462 4798938 - 4799369 + | UspA domain protein Rpal_4463 4800021 - 4799392 - | hypothetical protein TERM 3351 4800058 - 4800103 + H 100 -15.4 -4.4009 | gap 2 CAATGCGGTTTCAGC CCGCGACCTGAGCCGGACGGGG TTCA CCTTG-CCGGC-CGGGGCGCGG TTTTCTACAATCCGA Rpal_4464 4800137 - 4800577 + | hypothetical protein TERM 3352 4800645 - 4800608 - T 100 -17.7 -4.08216 | opp_overlap 4800608 4800605 4800615, overlap 4800610 GCACGCTGTTGAAAA CACCAAAGGCCGCCCGG AAAT CCGCGCGGCCTTTGGCC TCATTGTTGCGTCAC TERM 3353 4800608 - 4800645 + T 79 -15.5 -2.94872 | opp_overlap 4800608 4800610, overlap 4800605 4800615 GCACGCTGTTGAAAA CACCAAAGGCCGCCCGG AAAT CCGCGCGGCCTTTGGCC TCATTGTTGCGTCAC TERM 3354 4800643 - 4800610 - T 100 -22.5 -3.63922 | opp_overlap 4800608 4800605 4800615, overlap 4800608 ACGCTGTTGAAAACA CCAAAGGCCGCCCGG AAAT CCGCGCGGCCTTTGG CCTCATTGTTGCGTC TERM 3355 4800615 - 4800638 + T 86 -15.2 -3.6501 | opp_overlap 4800610 4800608, overlap 4800608 4800605 GTTGAAAACACCAAA GGCCGCCCGG AAAT CCGCGCGGCC TTTGGCCTCATTGTT Rpal_4465 4801184 - 4800678 - | protein of unknown function DUF892 Rpal_4466 4801591 - 4802682 + | hypothetical protein Rpal_4467 4802776 - 4804848 + | putative exported protein of unknown function TERM 3356 4804905 - 4804878 - T 70 -9.8 -3.54741 | GATCATTTCTGGAAA CGGGAGTAGTCG GCCT CGACCAACCCCG CCCGCCCAGGCAAAT TERM 3357 4804956 - 4804920 - T 86 -15.4 -3.64703 | gap 1, opp_overlap 4804926, overlap 4804926 GCCCGCCCAGGCAAA TG-AAAAGAGCGCCCTC CGTG GAGAGCGCTCTTTTGCA AGCTCAAAAACTCTG TERM 3358 4804949 - 4804926 - T 100 -14.6 -4.56914 | opp_overlap 4804926, overlap 4804920 CCAGGCAAATGAAAA GAGCGCCCTC CGTG GAGAGCGCTC TTTTGCAAGCTCAAA TERM 3359 4804926 - 4804949 + T 83 -12.4 -4.09685 | opp_overlap 4804926 4804920 CCAGGCAAATGAAAA GAGCGCCCTC CGTG GAGAGCGCTC TTTTGCAAGCTCAAA Rpal_4468 4805651 - 4804995 - | hypothetical protein TERM 3360 4805055 - 4805085 + g 81 -14.6 -3.55444 | CGGAGCCTTAGCCTT GCCGGCGGTTCCCG GCG CGGCGGCCGCTGGC TTTCCGGCCTGCGCC TERM 3361 4805568 - 4805540 - G 72 -11.7 -3.53012 | gap 1, opp_overlap 4805525 CCGTGCGTTGCCAAA GGCCGGCCGCGG TCGGTT CCGCGGC-GACC GATGGGGCGGCCGCG Rpal_4469 4807009 - 4805741 - | hypothetical protein Rpal_4470 4808342 - 4807017 - | glycosyl transferase group 1 Rpal_4471 4808495 - 4809556 + | glycosyl transferase family 2 TERM 3362 4809987 - 4809951 - g 74 -12.4 -3.53012 | gap 2, opp_overlap 4809977, overlap 4809986 GCTCGGTGCCGTAAA CGCTCTCGAAGCAGTGCG GAT CGC-CTGC-CCGAAAGCG CGCTTCTATCAAGCG Rpal_4472 4809625 - 4810611 + | GDP-mannose 4,6-dehydratase Rpal_4473 4810611 - 4811594 + | NAD-dependent epimerase/dehydratase Rpal_4474 4812890 - 4811616 - | Chloride channel core TERM 3363 4813037 - 4813005 - R 95 -15.6 -4.07568 | opp_overlap 4813012, overlap 4813007 4813010 CCGCGCCCCCCAAAA CAGAAGAGCGCGCC GACTG GGCGCGCTCTTCAA GGACCAAATAGCCGG TERM 3364 4813035 - 4813007 - R 100 -20.4 -3.63744 | opp_overlap 4813012, overlap 4813005 4813010 GCGCCCCCCAAAACA GAAGAGCGCGCC GACTG GGCGCGCTCTTC AAGGACCAAATAGCC TERM 3365 4813032 - 4813010 - R 95 -16.3 -3.95435 | opp_overlap 4813012, overlap 4813007 4813005 CCCCCCAAAACAGAA GAGCGCGCC GACTG GGCGCGCTC TTCAAGGACCAAATA TERM 3366 4813012 - 4813030 + r 71 -13.1 -3.01712 | opp_overlap 4813010 4813007 4813005 CCCCAAAACAGAAGA GCGCGCC GACTG GGCGCGC TCTTCAAGGACCAAA Rpal_4475 4814086 - 4813058 - | Thioredoxin-disulfide reductase Rpal_4476 4814276 - 4814704 + | thioesterase superfamily protein TERM 3367 4814784 - 4814773 - T 93 -7.2 -5.09895 | opp_overlap 4814780 GAGCGACCCAAAAAA GCGG GCAG CCGC CGTCTGAGCTCGGCA TERM 3368 4814870 - 4814821 - T 74 -5.3 -4.55295 | gap 4, opp_overlap 4814832 4814834, overlap 4814832 4814834 GTTCTGAGAAACAAA CTCATACGAGAGAC-TGTCGCGCTG CAGA CCGCGCGACACGTCT-TCG-AT-AG CAATAGCGGAAATCA Rpal_4477 4815203 - 4814883 - | ferredoxin TERM 3369 4815263 - 4815297 + r 73 -11.2 -3.53811 | overlap 4815264 ACGCGCCAGTCCTAT AGCGTCTCGGCCGGCG TTC CGCCAGCCGTTACGCC TTTCAAAAGCCTGGA TERM 3370 4815264 - 4815296 + r 75 -14.7 -2.72144 | overlap 4815263 CGCGCCAGTCCTATA GCGTCTCGGCCGGCG TTC CGCCAGCCGTTACGC CTTTCAAAAGCCTGG Rpal_4478 4815659 - 4815300 - | Hpt protein TERM 3371 4815777 - 4815792 + H 78 -10.4 -4.07885 | TTAACGCATCCTTGC CGGTGC AGGC GCACCG TTTTGGCACAACATC Rpal_4479 4815964 - 4816116 + | hypothetical protein TERM 3372 4818460 - 4818415 - g 72 -8.9 -4.08216 | gap 1, overlap 4818439 CGACGGCCTGGAAAA CCGCGTCACTGCGGTCATCAAC GAC GTCGACCTCCGC-GTGTCGCAG TTCGAGGATCTGCTC TERM 3373 4819696 - 4819657 - g 73 -12.8 -3.36492 | overlap 4819660 4819682 4819693 GCGTGAAGCGCAGAA CACCCTGGTGGCGACCTC GACC GAAGCCGCCAACCAGGTG AAGTCGCTGGCCAGC TERM 3374 4819694 - 4819660 - g 71 -15.1 -2.54794 | gap 1, overlap 4819657 4819682 4819693 TGAAGCGCAGAACAC CCTGGT-GGCGACCTC GACC GAAGCCGCCAACCAGG TGAAGTCGCTGGCCA TERM 3375 4820601 - 4820561 - g 70 -6 -4.25458 | AACGCGATCAACAAA TCGCTCAAGGACCTCGAC CTCGC GTCGCGGTCGGCGATCGA ACAGTCGCGGCAGGT Rpal_4480 4816100 - 4822177 + | conserved hypothetical protein; putative methyl-accepting chemotaxis protein TERM 3376 4822220 - 4822240 + F 100 -14 -4.8622 | opp_overlap 4822212 4822220 GCCATAACGATCCAA GCGGAGGC CTCGC GCCTCCGC TTTTTCATTGCCCGA TERM 3377 4822240 - 4822220 - f 76 -14 -3.14963 | opp_overlap 4822220, overlap 4822212 GCCATAACGATCCAA GCGGAGGC CTCGC GCCTCCGC TTTTTCATTGCCCGA TERM 3378 4822543 - 4822518 - f 73 -12.5 -3.16683 | opp_overlap 4822541 AGCCGAGGTGACCAA GCGACCCGCAG CATT CCGCCGGTCGC TCGACATCGACGCGT Rpal_4481 4822603 - 4824087 + | Amidase Rpal_4482 4824332 - 4825135 + | hypothetical protein Rpal_4483 4826213 - 4825320 - | Mammalian cell entry related domain protein TERM 3379 4826325 - 4826305 - R 95 -10.3 -4.41047 | ATTGCGGAAGCAAAA CGACGCACC GGC GGCGCGACG ACCGAAATCTTCCCA Rpal_4484 4827124 - 4826351 - | ABC transporter related Rpal_4485 4828278 - 4827127 - | protein of unknown function DUF140 TERM 3380 4828523 - 4828476 - g 71 -12.6 -3.25479 | gap 1, overlap 4828469 4828471 GGAGCAAAGACCGAA GCGATCGTCGTGGTGGCCG-AGC TGC GCTGCGGCGACCATGTCGGCCGC GGCGAATGCGTCCCC Rpal_4486 4828383 - 4829378 + | Mandelate racemase/muconate lactonizing protein Rpal_4487 4830556 - 4829348 - | major facilitator superfamily MFS_1 TERM 3381 4829923 - 4829965 + g 70 -11.3 -3.53224 | gap 2, opp_overlap 4829908 4829921, overlap 4829939 CGATCGTCAGGAACG TCGGATTACGCAGCAGCGACG CGC CG-CGCTGCGGCGTCG-CCGA TTTCGCCGGCGCATC Rpal_4488 4830633 - 4832090 + | hypothetical protein Rpal_4489 4833115 - 4832120 - | Pyridoxal-5'-phosphate-dependent protein beta subunit Rpal_4490 4834220 - 4833165 - | glycosyl transferase group 1 Rpal_4491 4835017 - 4834220 - | metallophosphoesterase Rpal_4492 4835727 - 4835071 - | Phosphatidylethanolamine N-methyltransferase Rpal_4493 4836620 - 4835820 - | phosphomethylpyrimidine kinase Rpal_4494 4836758 - 4837003 + | transcriptional regulator, AsnC family Rpal_4495 4837940 - 4837011 - | Gluconate 2-dehydrogenase (acceptor) TERM 3382 4837908 - 4837884 - G 73 -12.1 -3.37796 | overlap 4837892 GGTGAGCAGCCAGAA CGCAGCAACCG CAA CGATCGCCGCG ACCAGAGTTACGGCT Rpal_4496 4838423 - 4837974 - | cytochrome c prime Rpal_4497 4840856 - 4838535 - | Carbon-monoxide dehydrogenase (acceptor) TERM 3383 4841025 - 4841052 + r 85 -14.2 -3.55444 | opp_overlap 4841025 CGGCGCAAAAAGAAA CAGGTGCATCGG TTGC CCGATACACCTG TTTGGAAGGTCGCGC TERM 3384 4841052 - 4841025 - R 100 -16.4 -4.85782 | opp_overlap 4841025 CGGCGCAAAAAGAAA CAGGTGCATCGG TTGC CCGATACACCTG TTTGGAAGGTCGCGC Rpal_4498 4841395 - 4841102 - | hypothetical protein TERM 3385 4841219 - 4841166 - G 80 -15.9 -3.29947 | overlap 4841162 4841169 4841189 TAGCCACGATAGTAA CCACGGCCACGGCCGCGGTAATAGC CAGG GCCCCAACCGCGGCCACGACCGTAA TAGCCGCGCCCACGG TERM 3386 4841216 - 4841169 - G 86 -17.6 -2.82519 | overlap 4841162 4841166 4841189 CCACGATAGTAACCA CGGCCACGGCCGCGGTAATAGC CAGG GCCCCAACCGCGGCCACGACCG TAATAGCCGCGCCCA Rpal_4499 4841622 - 4843631 + | Carbamoyltransferase Rpal_4500 4845161 - 4843632 - | integral membrane protein MviN TERM 3387 4844159 - 4844149 - G 72 -8.2 -4.07568 | opp_overlap 4844153 TCGGCGCGGGTAAAA GCGC CGC GCGC GAACATCGCCCGCAT TERM 3388 4845336 - 4845286 - R 70 -10.3 -3.54424 | gap 1, overlap 4845294 4845332 CCCGATGTGGGTAAA GGCAGAGATTCCGGGTTCGCTCGC TCAC GCGAGCGC-CCCGGAATGACGGCG GCCAACGGCCTTACC TERM 3389 4845328 - 4845294 - R 84 -16.5 -2.98088 | gap 1, overlap 4845286 GGGTAAAGGCAGAGA TTCCGGGTTCGCTCGC TCAC GCGAGCGC-CCCGGAA TGACGGCGGCCAACG Rpal_4501 4846498 - 4845347 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 3390 4845692 - 4845658 - G 71 -12.8 -3.33261 | opp_overlap 4845691, overlap 4845680 GCGGAACGGTGACAA CATCGGCGAGCGCCTT CGA ATAGCGCTCGGCGACG ACGTTGCGCGCCGCG Rpal_4502 4847551 - 4846556 - | oxidoreductase domain protein Rpal_4503 4848684 - 4847692 - | NAD-dependent epimerase/dehydratase TERM 3391 4848162 - 4848142 - G 83 -4.5 -5.07567 | GTAGATCGTAAAAAA CCGCAGGCC AGT GGTCGGCAG CCGGTACAGATGGCT TERM 3392 4848188 - 4848204 + g 83 -3.6 -5.14563 | TGGCTGTAGCAATGC GCCATC AACTC GTTGGC TTTTTTGGTCGCCGC TERM 3393 4849217 - 4849265 + G 77 -10.9 -3.87815 | overlap 4849208 4849243 CGCCGCCACCTATTC GGTGTTCGTCGATCGGGCGACCG GAT TGATCGCCTTGTCGGCGATCATC TTTGTGACACTGCCG TERM 3394 4849243 - 4849263 + G 70 -11.2 -3.52906 | overlap 4849217 ATCGGGCGACCGGAT TGATCGCC TTGTC GGCGATCA TCTTTGTGACACTGC TERM 3395 4849476 - 4849495 + G 77 -7.8 -4.38322 | opp_overlap 4849475 4849474, overlap 4849478 TCGTCTCCGAAAAGC GCGGCGAT CCTG ATCGCCAC TTCTTTTATCATTCC Rpal_4504 4848867 - 4849826 + | hypothetical protein Rpal_4505 4849884 - 4850900 + | glycosyl transferase family 4 Rpal_4506 4852838 - 4850913 - | polysaccharide biosynthesis protein CapD Rpal_4507 4854351 - 4852879 - | rfaE bifunctional protein TERM 3396 4854116 - 4854103 - G 73 -3.7 -4.62069 | overlap 4854104 4854105 TTCGGATTCCAAAAA TCGCC CGGT GGCGT CATCACCGATCAGGC Rpal_4508 4855356 - 4854376 - | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 3397 4854720 - 4854697 - G 70 -5.9 -4.17296 | gap 1, opp_overlap 4854708 4854710 GTCGACATAGATAAA GTCG-CGGCG CTGGT CGCCGTCGGC GATGCCTTCTCGGTG Rpal_4509 4855540 - 4856616 + | lipopolysaccharide heptosyltransferase II Rpal_4510 4856687 - 4857274 + | phosphoheptose isomerase TERM 3398 4857707 - 4857731 + G 70 -6.3 -4.27316 | CAAGCGACGTTGAAG CCGCGAAGGCT GCC GGCATTCCCGG TTTTCGCTTCGAGGG Rpal_4511 4857271 - 4857813 + | histidinol-phosphate phosphatase family protein Rpal_4512 4858754 - 4857810 - | lipopolysaccharide heptosyltransferase I Rpal_4513 4858937 - 4859950 + | UDP-glucose 4-epimerase Rpal_4514 4860072 - 4861874 + | ABC transporter related Rpal_4515 4861936 - 4862637 + | fumarylacetoacetate (FAA) hydrolase TERM 3399 4864963 - 4864985 + G 72 -5.5 -4.32857 | CCGGGCTTCGAAGTC GTCGACGAC ATTGC GCTGTCGAC TTTCTCTTTCGCCAA TERM 3400 4865831 - 4865787 - g 91 -12 -4.25104 | gap 1 TGCCTGGCAGGAAAA GCTGCTGACGGCAGCACGGGC TCTC GCGCGGGCCGCCA-CTGCAGC GCGTACGGCGCTAGC TERM 3401 4866868 - 4866828 - g 73 -5.9 -4.34402 | opp_overlap 4866804, overlap 4866829 CTTTGCACACGAAAA TGCGGTCGAGGATTTCAAC GCG GTCGATGACCTCGTCCGCG CCCACGCCAGCGATA Rpal_4517 4863121 - 4869081 + | conserved hypothetical protein, putative DNA helicase Rpal_4518 4870125 - 4869088 - | diguanylate cyclase TERM 3402 4870740 - 4870759 + G 74 -10 -3.85909 | gap 1 CGCCGTGCTCGTCAT CGGCGCGGA CCC TCCG-GCCG TTTGGCTTTCCCTGC TERM 3403 4870842 - 4870867 + G 80 -15.5 -3.28712 | GGCGCGCTATGGTGA CGTTCGATCGC CTCG GCGGTCGAACG TTGTGGCGCCGGCCC Rpal_4519 4870444 - 4870902 + | hypothetical protein Rpal_4520 4871652 - 4870942 - | transcriptional regulator, Crp/Fnr family Rpal_4521 4872335 - 4871799 - | hypothetical protein Rpal_4522 4872571 - 4872338 - | hypothetical protein TERM 3404 4872554 - 4872532 - G 88 -9.8 -4.3129 | GATTCAGCATGAAAA GCTTCGGCGG ATC CGGCCGAAAC ACCACGCAGCTCTTC Rpal_4523 4873619 - 4872576 - | Radical SAM domain protein TERM 3405 4873400 - 4873383 - G 83 -8.3 -4.62069 | GGCCGACGCCAAAAA CGGCAGG AAGT CCGGCCG ATGAAACGGCTCACC Rpal_4524 4873742 - 4877059 + | adenylate/guanylate cyclase TERM 3406 4878163 - 4878115 - g 70 -11.6 -3.45945 | gap 2, overlap 4878116 4878119 CTCACCCAGAACGAA CGCACCGGCGCGCTCAA-CG-CGC TGC GCGACGGCCGCGCGCGCGTGTGCG TCGCCACCGACGTCG Rpal_4525 4877272 - 4879347 + | DEAD/DEAH box helicase domain protein TERM 3407 4879400 - 4879436 + T 71 -8.7 -3.85698 | gap 1, overlap 4879402 4879433 CCACTCCGATCGTTC CTCGTC-ATGGCCGGG CTCTAT CCCGGCCATCGACGTC TTTGTCGCGCGGCGC TERM 3408 4879402 - 4879434 + T 85 -15.7 -3.51934 | gap 1, overlap 4879400 4879433 ACTCCGATCGTTCCT CGTC-ATGGCCGGG CTCTAT CCCGGCCATCGACG TCTTTGTCGCGCGGC TERM 3409 4879493 - 4879462 - T 100 -16.7 -4.07568 | gap 1, opp_overlap 4879433 GGCGCCGCTGCAAAA CGTCTATGCCCGGC ACAAG GCCGGGCAT-GACG CGTTGCGAATGGTGG Rpal_4526 4880829 - 4879558 - | acyl-CoA dehydrogenase domain protein Rpal_4527 4881477 - 4881614 + | hypothetical protein TERM 3410 4881700 - 4881753 + F 86 -18.4 -2.79574 | gap 3, opp_overlap 4881703, overlap 4881698 ATCAAGCCTTTGAGG ACATTCAGTCGCCAGCCGTGACGGGCG CCT CGCCCG-CACGG-TGGCGA-TGGATGA TGATTGGTGGCTCTG TERM 3411 4881750 - 4881703 - f 81 -16.5 -2.78715 | gap 3, opp_overlap 4881700 4881698 AAGCCTTTGAGGACA TTCAGTCGCCAGCCGTGACGGGCG CCT CGCCCG-CACGG-TGGCGA-TGGA TGATGATTGGTGGCT Rpal_4528 4882138 - 4882269 + | hypothetical protein TERM 3412 4882364 - 4882345 - T 71 -5.6 -4.26903 | gap 1, overlap 4882330 GGCACGCGATGAAAA CCAC-GCGC GCT GCGCTGAGG AAAACCCGGCGATGG TERM 3413 4882413 - 4882369 - T 76 -7.9 -4.25104 | gap 3, opp_overlap 4882395 4882397 4882398, overlap 4882370 CTGCGCTGAGGAAAA CCCGGCGATGGCCAC--CGACC TGCT GGTCGCCGCGGCCACCGC-GGT CTATTTCGTCGCACT TERM 3414 4882398 - 4882412 + T 74 -12.8 -3.29704 | opp_overlap 4882370 4882369, overlap 4882397 4882395 CCGACCTGCTGGTCG CCGCGG CCA CCGCGG TCTATTTCGTCGCAC Rpal_4529 4882756 - 4882481 - | ribosomal protein S21 Rpal_4530 4883398 - 4883033 - | hypothetical protein TERM 3415 4883314 - 4883334 + g 77 -10.4 -3.98683 | opp_overlap 4883308 TCGAGAGCAGGCGGC CTCGCGAC AGATA GTCGCGGG TTTCCTTCATATCCT Rpal_4531 4883601 - 4883428 - | hypothetical protein Rpal_4532 4883900 - 4884169 + | hypothetical protein Rpal_4533 4884156 - 4884254 + | hypothetical protein TERM 3416 4884278 - 4884296 + F 74 -10.2 -3.71527 | CAGGCTCGGCTGTAT GGCTGGGC GGC GTCCGGCC TTTAGATAATTGCGA Rpal_4534 4884370 - 4884633 + | hypothetical protein Rpal_4535 4884703 - 4885458 + | putative GAF sensor protein Rpal_4536 4885459 - 4886751 + | signal transduction histidine kinase Rpal_4537 4886748 - 4887125 + | response regulator receiver protein TERM 3417 4887432 - 4887419 - f 71 -5.3 -4.49556 | GGCCCACGAAACAAA GAATG CCTG CATTC CGCGCCAGCCATGCG TERM 3418 4887552 - 4887538 - g 72 -7.1 -4.16681 | opp_overlap 4887531 4887538 4887540, overlap 4887528 4887525 4887530 4887539 AACACGACCGCAAAA CTGCG TCTTG CGCAG AGCAGTTCTCTGCTC TERM 3419 4888256 - 4888274 + G 70 -10.2 -3.64822 | CCAAGGCGTGGTGCC TCGCCGCC CCG GGCGGAGA TTTCAATCCCGGCAT Rpal_4538 4887472 - 4889604 + | outer membrane autotransporter barrel domain protein Rpal_4539 4890222 - 4889767 - | thioesterase superfamily protein Rpal_4540 4890340 - 4891026 + | Helix-turn-helix type 11 domain protein TERM 3420 4891518 - 4891500 - f 79 -8.8 -4.36903 | overlap 4891502 CCCACGAAACAGAAA CCGCGC CAACGCC GCGCGG CAGGCGTTGAGGTCC TERM 3421 4891830 - 4891808 - f 72 -12 -3.31144 | overlap 4891828 GGTCGAGCGCGAGAA CCGTCTTGCC GGC GGCAAGACCG GTCGGCGCGAGCGCG Rpal_4542 4893575 - 4893832 + | prevent-host-death family protein Rpal_4543 4893832 - 4894242 + | PilT protein domain protein TERM 3422 4894495 - 4894509 + G 73 -3.5 -4.59773 | gap 1 TGTTTTCTGTAGTGA CG-GCG TCTG CGCACG TTTTTAAGCCTACCG Rpal_4544 4894362 - 4895021 + | hypothetical protein TERM 3423 4895193 - 4895138 - T 100 -27 -3.09516 | gap 1, overlap 4895184 GGCCGCATCATCCAA CTCCCGTCCGTCATTCCGGGGCGCGCG CAT CGCGAACCC-GGAATGACGGACGAGGG CCGGAATCGAACGAT TERM 3424 4895266 - 4895208 - T 100 -32.9 -2.78712 | gap 1, opp_overlap 4895214 4895222 4895228, overlap 4895219 4895222 4895228 GCCGGAATCGAACGA TCGCCACCAGACAACGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCGTTGTCTGGTTG-GA TGGCCGCTGTTCGGC TERM 3425 4895214 - 4895261 + T 100 -36 -3.05935 | opp_overlap 4895208 4895219 4895222 4895228, overlap 4895222 4895228 ATCGAACGATCGCCA CCAGACAACGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCGTTGTCTGG TTGGATGGCCGCTGT TERM 3426 4895256 - 4895219 - T 100 -27.3 -2.79302 | opp_overlap 4895214 4895222 4895228, overlap 4895208 4895222 4895228 ACGATCGCCACCAGA CAACGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCGTTG TCTGGTTGGATGGCC TERM 3427 4895253 - 4895222 - T 100 -23.2 -3.54653 | opp_overlap 4895214 4895222 4895228, overlap 4895219 4895208 4895228 ATCGCCACCAGACAA CGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCG TTGTCTGGTTGGATG TERM 3428 4895222 - 4895253 + T 100 -23.2 -3.60661 | opp_overlap 4895222 4895219 4895208 4895228, overlap 4895214 4895228 ATCGCCACCAGACAA CGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCG TTGTCTGGTTGGATG TERM 3429 4895247 - 4895228 - T 100 -15 -4.53636 | opp_overlap 4895222 4895214 4895228, overlap 4895222 4895219 4895208 ACCAGACAACGAAAA GCCCCGGA TCGC TCCGGGGC TTTTCGTTGTCTGGT TERM 3430 4895228 - 4895247 + T 100 -15 -4.53636 | opp_overlap 4895228 4895222 4895219 4895208, overlap 4895222 4895214 ACCAGACAACGAAAA GCCCCGGA TCGC TCCGGGGC TTTTCGTTGTCTGGT TERM 3431 4895354 - 4895388 + T 70 -12.3 -3.16881 | gap 2, opp_overlap 4895329 GGGCGTGCTTCGCGC GCGATGCATACGCGGGT CGA GCCCGCGTATG-A-CGC TTGGTGGGATCAATA Rpal_4545 4896807 - 4895398 - | adenosylhomocysteinase Rpal_4546 4898264 - 4897068 - | Methionine adenosyltransferase TERM 3432 4898277 - 4898297 + r 79 -8.1 -4.2558 | overlap 4898279 CATCACCAACCCCTT GTCCGCCGG ACC CCGGCGGTG TTTTCGTGAAAGATA TERM 3433 4898279 - 4898295 + r 90 -15.1 -3.73042 | overlap 4898277 TCACCAACCCCTTGT CCGCCGG ACC CCGGCGG TGTTTTCGTGAAAGA Rpal_4547 4899680 - 4898328 - | hypothetical protein TERM 3434 4900872 - 4900833 - g 75 -15.8 -2.73875 | gap 1, overlap 4900830 TGCGCGGCAAGACCA TCG-CGGTGCTCGGCCTGA CCT TCAAGCCGGACACCGACGA CATGCGCGAGGCGCC Rpal_4548 4899887 - 4901197 + | nucleotide sugar dehydrogenase TERM 3435 4901498 - 4901514 + G 78 -13.7 -3.59262 | overlap 4901505 GTCCTGCGCAGCGTC GCCGTCG GCG CGACGGC TTTGGCGCTGTCGAG TERM 3436 4901505 - 4901530 + G 76 -8.2 -4.21194 | overlap 4901498 GCAGCGTCGCCGTCG GCGCGACGGC TTTGGC GCTGTCGAGC TTTTCGCTGATGCAC TERM 3437 4901679 - 4901658 - g 71 -12.3 -3.22475 | overlap 4901662 TGTATGTCGACAAGA TCAACGCCG CGGG CGGCGTCGA CGGCAAGAAGATCGA Rpal_4549 4901465 - 4902646 + | Extracellular ligand-binding receptor TERM 3438 4902728 - 4902777 + F 86 -6.4 -5.06414 | gap 2 CATACTCCCTGCGGT GGTTATGGATTCCGGGCTCGCGCC TAGC GGCGCGC-CCCGGAATG-ACGGCC TTTTTGTTGAGAGCG Rpal_4550 4902795 - 4903667 + | inner-membrane translocator TERM 3439 4904443 - 4904499 + G 75 -12.9 -3.36073 | overlap 4904409 4904444 GCGGCCTCGGCTCCA TCGTCGGCAGTATCGTCGGCGCCGC GGTGCTG GTGGTGCTGCCGCAACTGCTGACGG TGTTTCAGGACTATG Rpal_4551 4903671 - 4904615 + | inner-membrane translocator Rpal_4552 4904612 - 4905394 + | ABC transporter related Rpal_4553 4905387 - 4906091 + | ABC transporter related TERM 3440 4906289 - 4906268 - T 100 -17.3 -3.84451 | GCGTTGAAACGCAAA TGGCCGGGG TGAG CCCCGGCCA TCACGCAGATACAAC Rpal_4554 4907445 - 4906324 - | Methionine synthase vitamin-B12 independent TERM 3441 4906598 - 4906573 - G 72 -13.3 -3.14132 | gap 1 GCCCTTGGGCAGGAA GCG-CAGCGGCT CGA AGCCGCCGGCGC GCTCGGAATCGTATT TERM 3442 4907398 - 4907428 + g 71 -3.1 -4.58585 | gap 1 CTGCGGTCGCAGCAG GCTGCCG-ACCTCG TCGG CGCGGAACGGTGGC TTTGTTCTTTGCGTC Rpal_4555 4908178 - 4907462 - | ABC transporter related Rpal_4556 4908951 - 4908199 - | ABC transporter related Rpal_4557 4909973 - 4908948 - | inner-membrane translocator Rpal_4558 4910839 - 4909973 - | inner-membrane translocator Rpal_4559 4912168 - 4910990 - | Extracellular ligand-binding receptor TERM 3443 4911183 - 4911201 + g 70 -11.6 -3.38991 | overlap 4911182 GCGATCAGCGAATCG CCGTCGGC CTT GCCGCCGG TCTTCTTCAGCGCCT Rpal_4560 4912509 - 4912805 + | hypothetical protein TERM 3444 4913268 - 4913256 - g 89 -3.3 -5.38047 | CATCGACACAAAAAA CGTGG TGG CGACG CTCGGCCGGTTCCGC Rpal_4561 4912861 - 4913448 + | hypothetical protein Rpal_4562 4914319 - 4913456 - | formyltetrahydrofolate deformylase Rpal_4563 4914451 - 4915296 + | Uroporphyrinogen III synthase HEM4 TERM 3445 4915977 - 4915962 - g 70 -4 -4.45544 | gap 1 GCTGACCAACGAAAA GTG-CAG CTT CTGGCAC TTCCGCTGGGACGCC TERM 3446 4916715 - 4916691 - g 75 -2.8 -4.71426 | overlap 4916693 GTTCGATGAAGAAAA GACCGGCT GGGGCTGGA AGCAGGTC GCCAAGATCGACACC Rpal_4564 4915543 - 4916775 + | extracellular ligand-binding receptor Rpal_4565 4916904 - 4917851 + | inner-membrane translocator Rpal_4566 4917848 - 4919149 + | inner-membrane translocator Rpal_4567 4919146 - 4919895 + | ABC transporter related Rpal_4568 4919895 - 4920593 + | ABC transporter related Rpal_4569 4920759 - 4921337 + | hypothetical protein TERM 3447 4921922 - 4921966 + G 79 -16.4 -3.01712 | gap 1, overlap 4921947 TCGCGCGGCGGCTGT TCGTCGACCGCTGCAGCGGCC TGCT GGCCGCCGCGGTGG-CGGTGA TCTTCACCGCCGCAA TERM 3448 4921947 - 4921989 + G 71 -12.7 -3.23216 | overlap 4921922 CTGCAGCGGCCTGCT GGCCGCCGC-GGTGGCGGTGA TCT TCACCGCCGCAAGCC-CGGCC TTCCTCCTGGTCAGC Rpal_4570 4921459 - 4923411 + | hypothetical protein TERM 3449 4924073 - 4924021 - g 73 -4 -4.57569 | gap 1, opp_overlap 4924030, overlap 4924024 4924025 4924026 4924069 CCACCTGCTCAAAAA CAACTTCTTCACCG-GGGCGCTGTA TTGG TTCGGCGCCCGCCGCGAAGAGCTCG CCCACCGCGAGAAGG TERM 3450 4924069 - 4924024 - g 72 -5.4 -4.40561 | opp_overlap 4924030, overlap 4924021 4924025 4924026 CCTGCTCAAAAACAA CTTCTTCACCG-GGGCGCTGTA TTGG TTCGGCGCCCGCCGCGAAG-AG CTCGCCCACCGCGAG Rpal_4571 4923629 - 4924519 + | ABC transporter related Rpal_4572 4924516 - 4926447 + | AMP-dependent synthetase and ligase Rpal_4573 4926548 - 4927453 + | inner-membrane translocator Rpal_4574 4927559 - 4928632 + | inner-membrane translocator TERM 3451 4929528 - 4929507 - g 74 -15.1 -3.03338 | opp_overlap 4929501 4929520, overlap 4929496 AGAACGCCGCCAAGA CCGCCGGCG ATGC CGCCGACGG CGTGATCTTCCCGCT Rpal_4575 4928690 - 4929970 + | ABC transporter substrate-binding protein TERM 3452 4930104 - 4930074 - f 72 -7.5 -4.21773 | gap 1, opp_overlap 4930083 CCTCAACACAAACAA CCGTCATCCCCCGC GCAT GCGGGGGACC-CAG TACGCCGCAGCGTCG Rpal_4576 4930240 - 4931082 + | ABC transporter related TERM 3453 4931349 - 4931375 + F 78 -2.8 -5.00616 | overlap 4931353 ACGACCCACCTCAAG CGCTTATGCCTG CTT CAGGCAAGTACG TTTTTTGGGGAAGAG Rpal_4577 4932263 - 4933522 + | glycosyl transferase group 1 Rpal_4578 4934708 - 4933560 - | UDP-N-acetylglucosamine 2-epimerase TERM 3454 4934804 - 4934772 - H 71 -8.4 -3.86372 | gap 2, overlap 4934769 4934767 CCAAGGCAAACACAA GCGACC-GCC-GAGCG ATG CGCTTAGGCCGGCCGC CAAAACGGTTGATCC TERM 3455 4935015 - 4934985 - g 70 -11.9 -3.35679 | gap 1 GCTGCCGATGTACAA TCGTCACCATGGGG CCGA CCCCATGGGG-CGA CGAGTTCGGCCGGGC Rpal_4579 4934873 - 4936003 + | glycosyl transferase group 1 TERM 3456 4936498 - 4936488 - g 72 -8.2 -4.07568 | overlap 4936489 CGCCCGGCTTCAAAA CGCG CAT CGCG CTGCGGATAAATCGA Rpal_4580 4936168 - 4936527 + | hypothetical protein Rpal_4581 4937204 - 4938454 + | glycosyl transferase group 1 Rpal_4582 4938494 - 4939867 + | glycosyl transferase group 1 TERM 3457 4940539 - 4940502 - g 73 -13.4 -3.31461 | opp_overlap 4940495 4940509 4940526, overlap 4940503 CATCGATCTGCAGAA GTTCGCGCCCG-GCGACG CTGC CGCCGCGCGGGCGCGG-C TCGGGATTCTGCCGG TERM 3458 4940526 - 4940580 + G 100 -24.2 -3.61178 | opp_overlap 4940502 4940503, overlap 4940509 4940495 CGGCGACGCTGCCGC CGCGCGGGCGCGGCTCGGGATTCTGC CGG GCCGGATCGCGATCGGCGTCCGCGCG TTTCCGCTCAGTCCC TERM 3459 4941016 - 4940973 - g 71 -9.5 -3.78934 | opp_overlap 4940998 GCTTGTCGAGAACAA GGTTCAGCGCGAGCGCC-GCG GGCT CGCCGGC-CGTGCGCTGAGCC AAGAACTCTACGATG Rpal_4583 4939864 - 4941114 + | glycosyl transferase group 1 Rpal_4584 4941111 - 4942319 + | hypothetical protein TERM 3460 4942590 - 4942555 - g 82 -11.9 -4.10007 | gap 1, overlap 4942544 4942556 ATAACCGCGCCAAAA TCGTCGTCGGCGTCGA CGCCC TCGACACCGACG-CGC TGATCCAGGTCGTCG TERM 3461 4942589 - 4942556 - g 77 -15.4 -3.05522 | gap 1, overlap 4942544 4942555 TAACCGCGCCAAAAT CGTCGTCGGCGTCGA CGCCC TCGACACCGACG-CG CTGATCCAGGTCGTC Rpal_4585 4942410 - 4943267 + | dTDP-4-dehydrorhamnose reductase Rpal_4586 4943318 - 4944364 + | polysaccharide biosynthesis protein CapD TERM 3462 4944700 - 4944718 + G 77 -7.3 -4.46514 | opp_overlap 4944679, overlap 4944702 CGTCTGCGCCGACCG CGCCGCC GCCCA GGCGGAG TTTGTTTAGCTGGAT Rpal_4587 4944435 - 4945724 + | glycosyl transferase group 1 TERM 3463 4945971 - 4945983 + G 71 -9.1 -3.85817 | opp_overlap 4945958 4945960 ATCAGCCGATCGTCG TCGGC AAC GCCGA TTTCTACGGCGCGAT Rpal_4588 4945721 - 4947094 + | Methyltransferase type 12 TERM 3464 4947784 - 4947810 + G 86 -7.9 -4.88067 | gap 1, overlap 4947784 4947786 4947788 TCTACACCATCGATA CC-GTGCCCGCG AAGC TGCGGGCTCTGG TTTTTCTCAATCCGT Rpal_4589 4947141 - 4947983 + | ABC-2 type transporter TERM 3465 4948432 - 4948444 + G 70 -6.2 -4.1899 | CTCGAGCGGCATGAT CGCC CGGCT GGCG TTTTCGGTGGCGTCG Rpal_4590 4947980 - 4949230 + | ABC transporter related Rpal_4591 4949330 - 4949806 + | methyltransferase TERM 3466 4951033 - 4951052 + G 81 -11.4 -3.92373 | gap 1, overlap 4951033 CCCGGCCGCACTCCG CC-GCGCGG CAG CCGCGCAGG TTTCTCGGTCGACTG Rpal_4592 4949859 - 4951796 + | asparagine synthase (glutamine-hydrolyzing) Rpal_4593 4951807 - 4954905 + | glycosyl transferase family 2 Rpal_4594 4954968 - 4956158 + | hypothetical protein Rpal_4596 4957143 - 4957409 + | transposase IS3/IS911 family protein Rpal_4597 4957403 - 4958326 + | Integrase catalytic region TERM 3467 4958462 - 4958441 - T 81 -10.1 -4.17048 | TGCGCTTCAAAAGAA CGCTGCTCG CTCT CGAGCAGGG ATACGCTGACACCGC TERM 3468 4959158 - 4959140 - T 76 -9.6 -4.00468 | overlap 4959133 4959132 AGCAGAAGGCAGAAA GATCTGCG CTA CGCAAATC CGCGACCCGTCAAAT Rpal_4599 4960258 - 4959221 - | acyltransferase 3 TERM 3469 4959864 - 4959839 - G 79 -3.3 -4.99568 | gap 1 GAACATGAAATAAAA CGTCATCTC-GT AAA ACAGAGACCACG TAACGTTATTGAAGA TERM 3470 4959952 - 4959922 - G 86 -9.1 -4.69053 | gap 1 CACCATTTAAGAAAA CCAAATTGGCCGCG ATTA CGCG-CAAATTTGG AAGCGGAATATGCAA Rpal_4601 4961650 - 4961994 + | hypothetical protein Rpal_4602 4962273 - 4962028 - | hypothetical protein TERM 3471 4962473 - 4962455 - R 100 -11.6 -5.07011 | GACACAAAGGAAAAA GCGGGCGC CGA GGGCCCGC TTCCGCAAATCAATC Rpal_4603 4962923 - 4962507 - | methionine-R-sulfoxide reductase Rpal_4604 4963664 - 4962954 - | peptide methionine sulfoxide reductase TERM 3472 4964000 - 4964015 + H 75 -3.9 -4.81083 | GGAAGATTAACGCGG GGGCG GTGCAA CGCTC TTTTTCCTGGTTCAA TERM 3473 4964162 - 4964181 + H 100 -10.6 -5.60993 | opp_overlap 4964161 4964158 GCTTGAAGAACTGAG GGACGCGC GGCT GCGCGCCC TTTTTTTGTGCCCGC Rpal_4605 4964224 - 4967553 + | carbamoyl-phosphate synthase, large subunit Rpal_4606 4967777 - 4968253 + | transcription elongation factor GreA TERM 3474 4968297 - 4968280 - f 100 -9.8 -4.7373 | opp_overlap 4968280 CGACGGGACGAAAAA GCCGCG CTTCGC CGCGGC TTTTTTGTTGCCCGA TERM 3475 4968280 - 4968297 + F 100 -9.8 -5.4505 | opp_overlap 4968280 CGACGGGACGAAAAA GCCGCG CTTCGC CGCGGC TTTTTTGTTGCCCGA Rpal_4607 4968432 - 4968842 + | DoxX family protein TERM 3476 4968867 - 4968893 + T 81 -13.6 -3.59979 | opp_overlap 4968866 4968863 AGCACTGAAAAGATT GCAGCGGCGGCC TCA GGTCGTCGCGGC TTTCAACTCCAGCGG Rpal_4608 4969361 - 4968879 - | transcriptional regulator, AsnC family Rpal_4609 4969618 - 4970583 + | thioredoxin reductase Rpal_4610 4970592 - 4971515 + | transcriptional regulator, LysR family TERM 3477 4971706 - 4971726 + T 100 -11.8 -5.60993 | GCCAAAGACCTTAGA CCGGGCTC TTCGT GGGCCCGG TTTTTTTCTGCGCAA TERM 3478 4971809 - 4971792 - T 100 -14.1 -5.15634 | CAGCTCATGAAAAAA CGCGCGG GTGG CCGCGCG CTGCAGTGATGTTGG Rpal_4611 4972506 - 4971832 - | Cobyrinic acid ac-diamide synthase Rpal_4612 4973095 - 4972718 - | hypothetical protein Rpal_4613 4973524 - 4973189 - | hypothetical protein Rpal_4614 4973895 - 4973665 - | hypothetical protein Rpal_4615 4974926 - 4974114 - | Flp pilus assembly protein CpaB TERM 3479 4975385 - 4975365 - R 100 -15.4 -4.72272 | CCTTCCGACGAAAAA GCCCGGGC GGATG GCCCGGGC CCTGAAAACGTTGAA Rpal_4616 4975844 - 4975413 - | phasin TERM 3480 4976044 - 4976056 + r 70 -10.5 -3.54459 | overlap 4976054 GGTGGTGGGGCTCGT GGCCC GCC GGGCC TTTGAGGAGGCTTAG Rpal_4617 4976451 - 4976068 - | phasin TERM 3481 4977656 - 4977627 - g 70 -6.3 -4.18018 | gap 1 GCGCCGGATGCAAAA GACGAG-TCCAGCG AAC CGCAGGCGCCCGTC GAGTCGGAGAGCATT Rpal_4618 4976775 - 4980350 + | PAS/PAC sensor signal transduction histidine kinase Rpal_4619 4980898 - 4981149 + | Rv0623 family protein transcription factor Rpal_4620 4981146 - 4981550 + | PilT protein domain protein Rpal_4621 4981634 - 4982344 + | transcriptional regulator, Crp/Fnr family Rpal_4622 4982541 - 4982317 - | hypothetical protein TERM 3482 4982564 - 4982586 + H 78 -10.4 -4.06419 | TCCGTTGACCCGCCA CGCTGACGCC CGG GGCGACTGCG TTCTTTGTCGCGCAA Rpal_4623 4982779 - 4983891 + | nitrite reductase, copper-containing TERM 3483 4983998 - 4983961 - f 89 -14.4 -3.94002 | gap 1, opp_overlap 4983964 4983973, overlap 4983964 GAGGAGCGAAGCAAA GAAGCAATCCAG-TCCA GCGCT CGGAGCTGGATTGCTTC GCTTCGCTCGCGATG TERM 3484 4983995 - 4983964 - f 78 -10.3 -4.09321 | gap 1, opp_overlap 4983964 4983973, overlap 4983961 GAGCGAAGCAAAGAA GCAATCCAG-TCCA GCGCT CGGAGCTGGATTGC TTCGCTTCGCTCGCG Rpal_4624 4984067 - 4984948 + | protein of unknown function DUF323 TERM 3485 4986217 - 4986199 - g 74 -5.8 -4.57073 | opp_overlap 4986199, overlap 4986200 GACTTGCGCGAAAAA TCGCTGCG GCT CGCTGCGC ATCTGCTTGAATACG Rpal_4625 4985098 - 4986642 + | thymidine phosphorylase TERM 3486 4987263 - 4987240 - g 74 -12.4 -3.53091 | opp_overlap 4987215 ATCGGTCGGTCGAAA TCGCGTTCGC TGAT GCGAGCGCGA TCGCGGGACGGCCGA Rpal_4626 4986639 - 4987550 + | ribose-phosphate pyrophosphokinase Rpal_4627 4987547 - 4989175 + | beta-lactamase domain protein TERM 3487 4989263 - 4989249 - f 74 -12.8 -3.27475 | opp_overlap 4989254, overlap 4989247 CTCGGCATTAGAACA CCGCCG CGC CGGCGG ATCGCGCGATTCGCT Rpal_4628 4989314 - 4989565 + | hypothetical protein Rpal_4629 4989987 - 4989589 - | 4-oxalocrotonate tautomerase Rpal_4630 4990090 - 4990962 + | transcriptional regulator, LysR family Rpal_4631 4991082 - 4992092 + | extracellular solute-binding protein family 1 TERM 3488 4992246 - 4992193 - f 90 -18.4 -3.07227 | gap 3, opp_overlap 4992238, overlap 4992196 GGATGAAACCACAGA TCACGTCCTCATGGGTCGAGACGGCGC TAC GCGCCGCCTC-ACC-ATGAGGACG-GC GCCTGGTGCGTCCGA TERM 3489 4992244 - 4992196 - f 100 -25.6 -2.74525 | gap 2, opp_overlap 4992238, overlap 4992193 TGAAACCACAGATCA CGTCCTCATGGGTCGAGACGGCGC TAC GCGCCGCCTC-ACC-ATGAGGACG GCGCCTGGTGCGTCC Rpal_4632 4992236 - 4993882 + | binding-protein-dependent transport systems inner membrane component Rpal_4633 4993999 - 4994637 + | hypothetical protein Rpal_4634 4995454 - 4994804 - | 3-oxoacid CoA-transferase, B subunit Rpal_4635 4996182 - 4995466 - | 3-oxoacid CoA-transferase, A subunit TERM 3490 4995847 - 4995832 - G 72 -11.8 -3.61398 | GGTCTTGGTGAAGAA CGCCGG AATG CCGGCG CCGCCGGCGCGGATC TERM 3491 4997164 - 4997117 - g 75 -4.7 -4.64676 | gap 1, overlap 4997118 CCATCGCCAACAAAA CCAGCCTGTCGCTGATCGGCAC GGTGA GTGCCGA-CAGCGCGTCGCTGC GCAACGCGCTGCGCT Rpal_4636 4996390 - 4998336 + | AsmA family protein Rpal_4637 4999294 - 4998494 - | Ornithine carbamoyltransferase TERM 3492 4999068 - 4999026 - G 72 -11.9 -3.53012 | gap 1, overlap 4999009 4999007 GTGCGGCCTTTGAAA TGGCCGGCGCGC-GACAGCG CCAC CGCCGCCAGCGTGCCGAGCA CAGCCGCTGCCGTAG Rpal_4638 5000516 - 4999602 - | binding-protein-dependent transport systems inner membrane component Rpal_4639 5001655 - 5000513 - | spermidine/putrescine ABC transporter ATPase subunit Rpal_4640 5002562 - 5001756 - | transcriptional regulator, TrmB TERM 3493 5001944 - 5001979 + g 73 -15.4 -2.50816 | gap 1, overlap 5001943 ACGTCATCGACAGCG TGTG-CGCGTGCGGCGC GTA GCGCAGCTCGCGGCACA GTTCCTGGCTGGACG TERM 3494 5002587 - 5002606 + H 79 -8.6 -4.31433 | overlap 5002589 CGGCCGCAACGTCTA TTGTCGGA TTTT TCCGACGA TTTCTTGTCGAAATC Rpal_4641 5002793 - 5003626 + | binding-protein-dependent transport systems inner membrane component Rpal_4642 5003638 - 5004492 + | ABC transporter related Rpal_4643 5004496 - 5005551 + | ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Rpal_4644 5005608 - 5006303 + | hypothetical protein Rpal_4645 5006315 - 5007268 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 3495 5007299 - 5007284 - T 72 -11.8 -3.33696 | overlap 5007285 GCGGCTCCGAACTAA GCGCGG CGCG CCGCGC GGAGTGGGTGATCAG Rpal_4646 5009941 - 5007311 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rpal_4647 5010160 - 5011260 + | FAD dependent oxidoreductase TERM 3496 5011325 - 5011282 - f 71 -13.4 -2.52896 | gap 1, opp_overlap 5011277 5011298, overlap 5011270 5011266 5011296 5011298 TCACGTCGCAACCGA CGGC-GTCAACAAAATATCGA AAA TCGATTTTTTGTTGACGGGCG GCGCCTCTTGCGATT TERM 3497 5011298 - 5011308 + F 100 -5.4 -5.4505 | opp_overlap 5011296 5011282 5011298, overlap 5011277 GGCGTCAACAAAATA TCGA AAA TCGA TTTTTTGTTGACGGG Rpal_4648 5011351 - 5011659 + | transcriptional regulator, GntR family TERM 3498 5011972 - 5011999 + G 77 -13.4 -3.5394 | gap 1 TCGAGGCGGTGATCA GGCGCGA-CGCCG AGG CGGCGATCGCGGC TTTGGCCAAACATTT Rpal_4649 5011659 - 5012081 + | GntR domain protein Rpal_4650 5012356 - 5013558 + | putative ABC transporter (substrate-binding protein); putative branched-chain amino acid transporter Rpal_4651 5014168 - 5013986 - | hypothetical protein Rpal_4652 5014527 - 5014733 + | protein of unknown function DUF465 Rpal_4653 5015451 - 5014723 - | diguanylate cyclase Rpal_4654 5015604 - 5016092 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit Rpal_4655 5016089 - 5017189 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit Rpal_4656 5017346 - 5017609 + | ribosomal protein S21 TERM 3499 5017600 - 5017616 + T 71 -10.8 -3.53012 | CCGTCCGAGCGCGGC GGCGCG CTGAT CGCGCC TTTCGGCGACGAAAC TERM 3500 5017642 - 5017674 + T 100 -17.1 -3.93237 | opp_overlap 5017649, overlap 5017643 5017649 GAAACGAACTGAGTT TGAAGAACGCGGGCC CCG GGCTCGCGTTTTTCG TTGTTGCTTATTTCG TERM 3501 5017643 - 5017673 + T 90 -18.4 -2.94858 | opp_overlap 5017649, overlap 5017642 5017649 AAACGAACTGAGTTT GAAGAACGCGGGCC CCG GGCTCGCGTTTTTC GTTGTTGCTTATTTC TERM 3502 5017649 - 5017667 + T 100 -13.8 -5.00339 | opp_overlap 5017649, overlap 5017643 5017642 ACTGAGTTTGAAGAA CGCGGGCC CCG GGCTCGCG TTTTTCGTTGTTGCT TERM 3503 5017667 - 5017649 - T 75 -11.6 -3.63694 | opp_overlap 5017649 5017643 5017642 ACTGAGTTTGAAGAA CGCGGGCC CCG GGCTCGCG TTTTTCGTTGTTGCT TERM 3504 5017736 - 5017757 + T 76 -13.7 -3.18383 | opp_overlap 5017736 CCCCACACAACAAAA TGCCCGGGT CGAA GCCCGGGCA TTCATGACTGCGGAT TERM 3505 5017757 - 5017736 - T 100 -13 -4.84311 | opp_overlap 5017736 CCCCACACAACAAAA TGCCCGGG TCGAAG CCCGGGCA TTCATGACTGCGGAT Rpal_4657 5018661 - 5017786 - | hypothetical protein TERM 3506 5018626 - 5018637 + g 77 -5.8 -4.68593 | opp_overlap 5018626 5018625 CACCGACGGCAGAAT CTGC CCGA GCAG TTTTTCGGTGATGAA Rpal_4658 5019098 - 5018811 - | hypothetical protein Rpal_4659 5019302 - 5019676 + | Glyoxalase/bleomycin resistance protein/dioxygenase TERM 3507 5019807 - 5019828 + T 100 -18.7 -4.13995 | opp_overlap 5019807, overlap 5019818 GCCGAAAAACAAAAA CGCCCGGCC TTGC GGCCGGGCG TTTCGTTTCTGGCAA TERM 3508 5019828 - 5019807 - T 100 -18.7 -5.61881 | opp_overlap 5019807 5019818 GCCGAAAAACAAAAA CGCCCGGCC TTGC GGCCGGGCG TTTCGTTTCTGGCAA Rpal_4660 5021258 - 5019855 - | NAD(P)(+) transhydrogenase (AB-specific) Rpal_4661 5021595 - 5021272 - | NAD(P) transhydrogenase subunit alpha part Rpal_4662 5022748 - 5021621 - | NAD(P)(+) transhydrogenase (AB-specific) TERM 3509 5022671 - 5022724 + g 70 -8.7 -3.90744 | gap 1, overlap 5022674 5022676 GGCGCCGAGAGCTTT CAGCTTCTTGACCGTGTCGGGCGTCG CCG CGACGCGCGGCTCGG-CGGGATCTTG TTCTTTGGCAACAGC TERM 3510 5022676 - 5022719 + g 80 -13.8 -3.63464 | gap 1, overlap 5022674 5022671 CGAGAGCTTTCAGCT TCTTGACCGTGTCGGGCGTCG CCG CGACGCGCGGCTCGG-CGGGA TCTTGTTCTTTGGCA Rpal_4663 5023096 - 5022944 - | aa3 type cytochrome c oxidase subunit IV Rpal_4664 5023523 - 5023383 - | putative death on curing protein Rpal_4665 5025498 - 5023582 - | oligoendopeptidase, pepF/M3 family TERM 3511 5024037 - 5024065 + g 79 -16.7 -2.82023 | overlap 5024034 TGTCCTCGACCTTGC CGGCGAGCAGCGC CTG GCGCTGCTTGCGG TCCTTGGTCTGGGTC TERM 3512 5024135 - 5024115 - G 74 -14.7 -3.02144 | GCATTTCGCCGAACA CGCTGGCAG TCT CCGCCAGCG TCAGCGGCGTCGGCG TERM 3513 5024316 - 5024293 - G 82 -11.7 -4.13767 | gap 1 GGTCGGATGCGAAAA CGCGCCGGGC GCCTT GCCCGGC-CG GACCGGGGCATCGAT Rpal_4666 5025864 - 5026499 + | Integral membrane protein TerC Rpal_4667 5026595 - 5028082 + | two component, sigma54 specific, transcriptional regulator, Fis family TERM 3514 5028238 - 5028201 - f 100 -19.9 -3.61239 | overlap 5028222 5028226 GATAGTGACAGACAA CCAAGGCGGCCCGTGGC ACAA GCCACTGACCGCCTTAG CCAATAGCAACTGGG TERM 3515 5029047 - 5029023 - g 73 -14.2 -3.14211 | ACCGGTGTGGACCAA GGCCGGCGCG CTGAC CGCGCAGGCC AAGGGCGTGATCGCG TERM 3516 5030489 - 5030517 + G 74 -12.3 -3.54029 | opp_overlap 5030489 TCGCCGGCGACTACA CCGGCTCGTCGGG CGC CTCGTCGAGCCCG TTCTCGTTCCTGGAG Rpal_4668 5028430 - 5030604 + | Peptidoglycan-binding domain 1 protein TERM 3517 5030677 - 5030656 - f 73 -12.9 -3.1886 | opp_overlap 5030656 ATTGAATGTTATCAA GGGCTCGCC GCGA GGCGGGCCC TTATTGTTAACTTAG TERM 3518 5030656 - 5030677 + F 95 -15.1 -3.99494 | opp_overlap 5030656 ATTGAATGTTATCAA GGGCTCGCC GCGA GGCGGGCCC TTATTGTTAACTTAG TERM 3519 5031593 - 5031576 - g 72 -6.9 -4.2349 | GGCGGACATCGAAAA GCGCCGC GACG GCAGCAC TGTCGCACCGGCCAA TERM 3520 5031747 - 5031714 - g 100 -20.3 -3.2614 | gap 1 GATGGCCGACATCAA GGCCGCGGCCGCCGAC GCG GTCG-CGGCTGCGGCC GGCGTGAAGCCGGCC Rpal_4669 5030926 - 5032548 + | protein of unknown function DUF882 TERM 3521 5032598 - 5032578 - T 100 -11.8 -5.47218 | opp_overlap 5032578 5032579, overlap 5032579 TCCGATCCAAAAAAA CGCCCGGG CTGGT CCCGGGCA TTTTTATTTTTAGCG TERM 3522 5032578 - 5032598 + T 100 -9.6 -5.61881 | opp_overlap 5032578 5032579, overlap 5032579 TCCGATCCAAAAAAA CGCCCGGG CTGGT CCCGGGCA TTTTTATTTTTAGCG TERM 3523 5032579 - 5032597 + T 83 -13.1 -3.95502 | opp_overlap 5032578 5032579, overlap 5032578 CCGATCCAAAAAAAC GCCCGGG CTGGT CCCGGGC ATTTTTATTTTTAGC TERM 3524 5032597 - 5032579 - T 83 -13.1 -3.87608 | opp_overlap 5032579 5032578, overlap 5032578 CCGATCCAAAAAAAC GCCCGGG CTGGT CCCGGGC ATTTTTATTTTTAGC Rpal_4670 5032946 - 5032674 - | hypothetical protein TERM 3525 5033004 - 5032980 - R 79 -9.2 -4.12902 | gap 1 TAATGATTGGGAAAA GCG-GCGGGGC GGTC GCCTCGCGCGC CGCATCTGCGCCGGA Rpal_4671 5033433 - 5033134 - | protein of unknown function DUF1244 TERM 3526 5033836 - 5033870 + G 70 -9.8 -3.737 | overlap 5033837 5033839 5033863 GGCTGGTGGAACGTG TCGTCGCGAAGCTGCG AGA CGCTGCTGCGCGGTGC TTTGGTGGCGCGTTA Rpal_4672 5033626 - 5034210 + | protein of unknown function DUF1036 Rpal_4673 5034207 - 5035640 + | pyruvate kinase Rpal_4674 5036295 - 5035867 - | OsmC family protein Rpal_4675 5037296 - 5036292 - | alpha/beta hydrolase fold Rpal_4676 5038029 - 5037367 - | Tetratricopeptide TPR_2 repeat protein TERM 3527 5037850 - 5037833 - G 70 -2.5 -4.68724 | opp_overlap 5037842, overlap 5037834 GCACCGAACAGAAAA TCGAGCC CCTT GGCGCGG TCGGTCGGCACCCGC TERM 3528 5038073 - 5038053 - R 100 -18.3 -4.04318 | overlap 5038065 TGTAGACACGACAAA GCGCGCTGC AAA GCAGCGCGC GCGTCACACCGGCGT TERM 3529 5038123 - 5038099 - R 76 -11.4 -3.70902 | gap 1, overlap 5038065 GGCGTGAGATGGAAA GCG-CGAGCCG CGAG CGGCCCGGCGC AAATCAGCCCTGGCG Rpal_4677 5038252 - 5038127 - | ribosomal protein L36 TERM 3530 5038340 - 5038310 - H 100 -11.9 -4.47679 | gap 2, opp_overlap 5038309 5038307 5038310 AATGCAAAACATAAA CGTCCCGCCGGCGAG GAG CCCGCC--CGGGACG CTGTTTATCTATCCA Rpal_4678 5038563 - 5039432 + | amidohydrolase 2 Rpal_4679 5039698 - 5040438 + | haloacid dehalogenase, type II Rpal_4680 5040515 - 5040997 + | YbaK/prolyl-tRNA synthetase associated region TERM 3531 5041007 - 5041024 + T 74 -14.1 -2.8507 | opp_overlap 5041007, overlap 5041004 CCGTGAACATGACAA CGGGGCC CGCG GGCCCCG TCATTGCTTGCATCA TERM 3532 5041024 - 5041007 - T 79 -14.1 -3.52073 | opp_overlap 5041007 5041004 CCGTGAACATGACAA CGGGGCC CGCG GGCCCCG TCATTGCTTGCATCA Rpal_4681 5041361 - 5041071 - | hypothetical protein Rpal_4682 5042860 - 5041535 - | methyl-accepting chemotaxis sensory transducer TERM 3533 5041990 - 5041964 - GR 76 -8.7 -4.21194 | CGCCACCACCGAAAA GC-CGCGGCCGGC GTC ACCGG-CGCGTGC CGCCTCGATCGTGGC Rpal_4683 5043356 - 5042835 - | putative PAS/PAC sensor protein TERM 3534 5043270 - 5043286 + gr 78 -10.1 -4.08216 | GTTGGCGTAGGTGAT CCGGCCT TTC AGGTCGG TTTTGGACACGATGA Rpal_4684 5043810 - 5043586 - | hypothetical protein Rpal_4685 5044067 - 5045428 + | polysaccharide biosynthesis protein Rpal_4686 5045484 - 5045717 + | hypothetical protein Rpal_4687 5046661 - 5045873 - | 3-hydroxybutyrate dehydrogenase Rpal_4688 5047849 - 5046710 - | Patatin Rpal_4689 5048459 - 5047944 - | SCP-like extracellular TERM 3535 5048689 - 5048653 - R 91 -12.2 -4.26903 | gap 1, overlap 5048654 TTGAGGGCATCAAAA CGGC-AACGGCCCGGAC TTGC GTCCGGGCCGCGAGCAG TCGCCGTGGAGGTTC TERM 3536 5048687 - 5048654 - R 70 -12.3 -3.1582 | overlap 5048653 TGAGGGCATCAAAAC GGCAACGGCCCGGAC TTGC GTCCGGGCCGCGAGC AGTCGCCGTGGAGGT Rpal_4690 5049740 - 5048703 - | Glutamate--ammonia ligase TERM 3537 5049934 - 5049906 - H 76 -6.6 -4.4648 | gap 1, opp_overlap 5049923 5049924, overlap 5049907 ACTTCGACGAGAAAA CCGGCGGC-GCAC CATC GTGCAGCCGTCCG CAAAAACGCCCACGG Rpal_4691 5050235 - 5050417 + | hypothetical protein TERM 3538 5050469 - 5050491 + T 100 -9.1 -5.06414 | gap 1, opp_overlap 5050469 AGAGCGACTGACGAA GGGCCG-GCG CACG CGTTCGGCCC TTTTTGTTGCGCCGA Rpal_4692 5051454 - 5050519 - | Glutaminase TERM 3539 5051539 - 5051499 - R 79 -8.2 -4.32951 | opp_overlap 5051534, overlap 5051503 5051534 AGGTCAATCAACAAA GACAGCCCCGTCATTGCG AGGAG CGCAGCGACGAAGCAATC CATGCCGCACGCGGG Rpal_4693 5052109 - 5051600 - | hypothetical protein Rpal_4694 5053751 - 5052096 - | nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein TERM 3540 5052808 - 5052852 + g 70 -6.3 -4.25104 | gap 2, overlap 5052804 5052812 CACGCTTCGAACCGC GCATCGCCGGCCGCGGCGCGC AGTTC GTCCGGCTCGGCCGGC-A-GC TTTTCATAGGCCGGA Rpal_4695 5054076 - 5053762 - | hypothetical protein TERM 3541 5054045 - 5053995 - G 70 -11.1 -3.53012 | gap 1, opp_overlap 5053993 5053995 TCGCGGTTCGGTAAA TCACCACGCCGTCGGTGGTG-CGG TTCG CAGTCACCACCGAAGGACCGGTGA TCTTGATCTTCTGTT Rpal_4696 5055509 - 5054073 - | uroporphyrin-III C-methyltransferase TERM 3542 5054295 - 5054264 - G 70 -13 -3.02144 | gap 1 TCACCCGCGCGAACA CGCCGACCG-GCG TATCGGC CGCGCGGCCGGCG GCGAGCAGCCCGTCA TERM 3543 5055740 - 5055690 - H 74 -9.8 -3.72576 | gap 2, overlap 5055691 GCTGGGTGGAGCAAA CGCCGTGCCGCCATTCCGGC TCCCGCGACTCCC GCCGGA-TGGCGGC-CGGCT AGAGTGACAGCCGGC TERM 3544 5055739 - 5055691 - H 70 -13.3 -2.83403 | gap 2, overlap 5055690 CTGGGTGGAGCAAAC GCCGTGCCGCCATTCCGGC TCCCGCGACTCCC GCCGGA-TGGCGGC-CGGC TAGAGTGACAGCCGG TERM 3545 5055870 - 5055885 + H 71 -6 -4.36914 | opp_overlap 5055871, overlap 5055871 ATTTGACCCCTGAAA AGGCGC CAGC GCGCCG TTTTCTCGCGAGACA TERM 3546 5055884 - 5055871 - H 76 -9.5 -4.09685 | opp_overlap 5055870 5055871 TTTGACCCCTGAAAA GGCGC CAGC GCGCC GTTTTCTCGCGAGAC Rpal_4697 5055908 - 5058082 + | malate synthase G TERM 3547 5058105 - 5058140 + F 90 -13.5 -4.08216 | gap 2, opp_overlap 5058114, overlap 5058111 5058114 CACGCCTGTTACTTC GCTACAGAACCTCCCCC ACAA GGGGGAGGTTCT-T-GC TTTTGGAGCGCATGA TERM 3548 5058111 - 5058136 + F 100 -19.1 -3.66908 | opp_overlap 5058114, overlap 5058105 5058114 TGTTACTTCGCTACA GAACCTCCCCC ACAA GGGGGAGGTTC TTGCTTTTGGAGCGC TERM 3549 5058114 - 5058133 + F 93 -15 -3.965 | opp_overlap 5058114, overlap 5058111 5058105 TACTTCGCTACAGAA CCTCCCCC ACAA GGGGGAGG TTCTTGCTTTTGGAG TERM 3550 5058133 - 5058114 - f 83 -15 -3.48593 | opp_overlap 5058111 5058105 5058114 TACTTCGCTACAGAA CCTCCCCC ACAA GGGGGAGG TTCTTGCTTTTGGAG Rpal_4698 5058273 - 5058473 + | CsbD family protein TERM 3551 5058497 - 5058516 + T 100 -12.1 -5.63517 | opp_overlap 5058497 GCAGTGAATCGAAAA GCCCCGG CACGCA CCGGGGC TTTTTTGTTTGAGCA TERM 3552 5058516 - 5058497 - T 95 -12.8 -4.28774 | opp_overlap 5058497 GCAGTGAATCGAAAA GCCCCGGC ACGC ACCGGGGC TTTTTTGTTTGAGCA TERM 3553 5058600 - 5058580 - T 100 -18.3 -5.26119 | opp_overlap 5058578 5058577 TGCCGAAAAACAAAA GGCCGGGCA GAT TGCCCGGCC GGATTGCTGGCTTAG Rpal_4699 5058773 - 5058612 - | hypothetical protein Rpal_4700 5059589 - 5058930 - | hypothetical protein Rpal_4701 5060382 - 5059615 - | ErfK/YbiS/YcfS/YnhG family protein TERM 3554 5060754 - 5060776 + G 72 -6.9 -4.2461 | overlap 5060747 GTGATCTTGCTGGTC GGCCTGCTG TATGT CGGCAAGCC TTTCTTCCTGCCGAT Rpal_4702 5060604 - 5061719 + | protein of unknown function UPF0118 TERM 3555 5061809 - 5061788 - T 75 -12.3 -3.65351 | CCACTCTTACGCAAA CATCCGCCC TGCG AGGCGGATG TCGGTATCAGCTTGA Rpal_4703 5062230 - 5061835 - | hypothetical protein TERM 3556 5062460 - 5062493 + r 100 -21.1 -3.81488 | gap 1, opp_overlap 5062462 CCGAAGCCGGCGATA CAGGGCGCGGCTGTGT GAT GC-CAGCCGCGCCCTG TTCTATTTGAGGCAA TERM 3557 5062491 - 5062462 - R 90 -17.9 -2.87881 | opp_overlap 5062460 GAAGCCGGCGATACA GGGCGCGGCTG TGTGATGC CAGCCGCGCCC TGTTCTATTTGAGGC TERM 3558 5062543 - 5062577 + r 72 -12 -3.29144 | opp_overlap 5062545 5062548, overlap 5062545 5062548 5062574 GCCGATCTCTAAATA AATAACGCCGCCCGGC GGA GCCGGACGGCGTCGTC TTCTCAGGGACGTAA TERM 3559 5062545 - 5062575 + r 80 -14.6 -3.21395 | opp_overlap 5062545 5062548, overlap 5062543 5062548 5062574 CGATCTCTAAATAAA TAACGCCGCCCGGC GGA GCCGGACGGCGTCG TCTTCTCAGGGACGT TERM 3560 5062575 - 5062545 - R 100 -16.8 -4.42806 | opp_overlap 5062545 5062543 5062548 5062574, overlap 5062548 CGATCTCTAAATAAA TAACGCCGCCCGGC GGA GCCGGACGGCGTCG TCTTCTCAGGGACGT TERM 3561 5062572 - 5062548 - R 100 -20.7 -4.32678 | opp_overlap 5062548 5062545 5062543, overlap 5062545 TCTCTAAATAAATAA CGCCGCCCGGC GGA GCCGGACGGCG TCGTCTTCTCAGGGA TERM 3562 5062548 - 5062572 + r 86 -18.5 -2.80074 | opp_overlap 5062545 5062548, overlap 5062545 5062543 TCTCTAAATAAATAA CGCCGCCCGGC GGA GCCGGACGGCG TCGTCTTCTCAGGGA Rpal_4704 5063411 - 5062605 - | response regulator receiver and unknown domain protein TERM 3563 5063170 - 5063124 - G 79 -10.8 -4.00782 | gap 3 CGACAGCAGCAGAAA CGCCTG-GC-GCGGCAG-CGGCG TGAT CGCCGACAGCCGCCGCTCCGACG GCATCGGCAGGGTTC TERM 3564 5063266 - 5063246 - G 72 -4.5 -4.45261 | overlap 5063239 5063249 TAAACAAACGGAAAA GACCCGGAC GGG GACCGTGCC GCTCGTCGAGCAGGG TERM 3565 5063582 - 5063566 - H 75 -4.3 -4.77079 | GACAGATCAAGAAAA CCCTCGA AGT TCAGGGG ACTTGACCATGGGGA Rpal_4705 5063614 - 5063826 + | hypothetical protein Rpal_4706 5063826 - 5064371 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 3566 5064481 - 5064509 + T 100 -19.7 -4.00532 | opp_overlap 5064477 TCGCGAGCAGATCGA GATCTGGCCGAGC GTC GTTCGGCCAGATC TTTGCTGTTTGCGCG Rpal_4707 5066199 - 5064529 - | signal transduction histidine kinase TERM 3567 5066450 - 5066477 + r 73 -3.2 -4.67982 | gap 1, overlap 5066461 5066463 CCCAGCGATGGCTCA GGCCGACC-GCCG CGG CGTCAGGCCGCCC TTTTCTTCGATAAAG Rpal_4708 5067076 - 5066447 - | urease accessory protein UreG TERM 3568 5066503 - 5066519 + g 71 -2.9 -4.67904 | opp_overlap 5066501, overlap 5066501 5066506 TAAAGCCGATAATGC GATCGAG GCC TTCGCTC TTTTTCAGATTGGTC TERM 3569 5068254 - 5068239 - H 91 -11.8 -4.386 | opp_overlap 5068239 5068241 CAATTTGCGAGAAAA CCCGGC ACTT GCCGGG GCGGGTGTAGTGATT Rpal_4709 5068481 - 5068765 + | hypothetical protein Rpal_4710 5070945 - 5068834 - | molybdopterin oxidoreductase TERM 3570 5068913 - 5068894 - G 81 -15 -3.58343 | opp_overlap 5068893 5068892 5068896 TTTATTATCGTGAAA CGCCGCAC CGCC GTGCGGCG CGATGGATTCTGCGC TERM 3571 5069742 - 5069710 - G 89 -11.1 -4.18488 | overlap 5069712 ATGCACCGCAACAAA CAGGTCCTCGCGGGC GAA GCCGGCACGGACCAG CTCCTGCTCCGGCGC TERM 3572 5069740 - 5069712 - G 77 -12.3 -3.69068 | overlap 5069710 GCACCGCAACAAACA GGTCCTCGCGGGC GAA GCCGGCACGGACC AGCTCCTGCTCCGGC Rpal_4711 5071080 - 5071406 + | hypothetical protein Rpal_4712 5072658 - 5071420 - | cyclic nucleotide-binding protein Rpal_4713 5073430 - 5072711 - | transcriptional regulator, Crp/Fnr family TERM 3573 5073583 - 5073604 + H 83 -7.3 -4.56597 | overlap 5073569 CCGTCATGCATGGTG CAAGTCGTT GTTT GGCGACTTG TTTTTACCGACGGGC Rpal_4714 5073625 - 5073942 + | conserved hypothetical protein; putative cytochrome c Rpal_4715 5075098 - 5073902 - | Mammalian cell entry related domain protein Rpal_4716 5075889 - 5075110 - | ABC transporter related Rpal_4717 5077040 - 5075892 - | protein of unknown function DUF140 TERM 3574 5077426 - 5077368 - g 70 -6 -4.19371 | gap 3, opp_overlap 5077373 5077377, overlap 5077370 5077371 GAAATCTGGAAGAAA CACCGCGAAGCCTG-CCGGGTGGCGCGGC AGCG GCCGCACCAGCCGGACAGCCTT-G-GTCA TCTGGTGCACCGTCC TERM 3575 5077426 - 5077370 - g 70 -10 -3.68725 | gap 1, opp_overlap 5077373 5077377, overlap 5077368 5077371 AATCTGGAAGAAACA CCGCGAAGCCTG-CCGGGTGGCGCGGC AGCG GCCGCACCAGCCGGACAGCCTTGGTCA TCTGGTGCACCGTCC TERM 3576 5077373 - 5077423 + G 77 -16.1 -2.66316 | gap 1, opp_overlap 5077368 5077370 5077371, overlap 5077377 CTGGAAGAAACACCG CGAAGCCTG-CCGGGTGGCGCGGC AGCG GCCGCACCAGCCGGACAGCCTTGG TCATCTGGTGCACCG TERM 3577 5077377 - 5077419 + G 80 -15.5 -3.25719 | gap 1, opp_overlap 5077368 5077370 5077371, overlap 5077373 AAGAAACACCGCGAA GCCTG-CCGGGTGGCGCGGC AGCG GCCGCACCAGCCGGACAGCC TTGGTCATCTGGTGC Rpal_4718 5077191 - 5077601 + | hypothetical protein Rpal_4719 5080353 - 5077630 - | GCN5-related N-acetyltransferase TERM 3578 5078877 - 5078861 - G 88 -10.1 -4.42062 | TAGGCCGCAAACAAA CCGCTGA TCT CCAGCGG ATCGAGCCAGGTGCG TERM 3579 5079465 - 5079491 + g 72 -11.5 -3.53811 | gap 1, opp_overlap 5079451 5079450 TCGCGACCCGCTTGC CGCGCGG-CGCG CTGA CGCGGCCGAGCG TTTCGGCACAGTCGA Rpal_4720 5080885 - 5080493 - | CBS domain containing membrane protein TERM 3580 5081762 - 5081802 + G 89 -17.6 -3.38316 | gap 1, opp_overlap 5081742, overlap 5081760 GCCGCAATGCGCTCG GCCGGCTGCGCC-CGTTGC TGGA GCAGCGCGGTGTGGCCGGC TTCGTTCGCTGGTGC Rpal_4721 5081176 - 5082735 + | hypothetical protein Rpal_4722 5084480 - 5082717 - | Poly-beta-hydroxybutyrate polymerase domain protein Rpal_4723 5085586 - 5084750 - | UspA domain protein Rpal_4724 5085776 - 5086609 + | UspA domain protein TERM 3581 5087143 - 5087109 - g 75 -4.4 -4.59773 | CGTCACCCGCAAAAA CCTGCTGCGCGCC-G-TC GCC GATCTGGCGCGC--CAGG CGCCCGAACCGAATG Rpal_4725 5086696 - 5087427 + | putative signal transduction protein with CBS domains TERM 3582 5087461 - 5087489 + F 71 -10.9 -3.52787 | overlap 5087462 5087464 GTTTATGTGGCCCTG ACAGCGGTGGGCG CTC TGCCTGCCGCTGG TTGTGATGTTGCGTC TERM 3583 5087462 - 5087488 + F 75 -14.4 -2.7119 | overlap 5087461 5087464 TTTATGTGGCCCTGA CAGCGGTGGGCG CTC TGCCTGCCGCTG GTTGTGATGTTGCGT TERM 3584 5088051 - 5088063 + G 75 -3.3 -4.82901 | CCTGATCGACGGTCG CGGCA TCA TGCGG TTTTTCTCGCGCGCG Rpal_4726 5087572 - 5089098 + | PAS/PAC sensor signal transduction histidine kinase Rpal_4727 5089091 - 5089702 + | two component transcriptional regulator, LuxR family Rpal_4728 5089788 - 5090180 + | response regulator receiver protein Rpal_4729 5090379 - 5091071 + | transcriptional regulator, Crp/Fnr family TERM 3585 5091121 - 5091153 + F 71 -11.4 -3.53012 | gap 1, opp_overlap 5091127, overlap 5091125 5091127 TTTCATCGGATCGGA CAGA-CAGGCCACCA GCAA TGGTGGCCTCTTCTG TTTGGGCCCGAGCCA TERM 3586 5091125 - 5091148 + F 76 -11 -3.81488 | opp_overlap 5091127, overlap 5091121 5091127 ATCGGATCGGACAGA CAGGCCACCA GCAA TGGTGGCCTC TTCTGTTTGGGCCCG TERM 3587 5091146 - 5091127 - f 75 -13.6 -3.00022 | opp_overlap 5091127 5091125 5091121 CGGATCGGACAGACA GGCCACCA GCAA TGGTGGCC TCTTCTGTTTGGGCC TERM 3588 5091127 - 5091146 + F 79 -13.6 -3.49232 | opp_overlap 5091127, overlap 5091125 5091121 CGGATCGGACAGACA GGCCACCA GCAA TGGTGGCC TCTTCTGTTTGGGCC TERM 3589 5091998 - 5091954 - g 71 -12.1 -3.21924 | gap 1, opp_overlap 5091952 5091949 5091991, overlap 5091952 5091955 TGATCGTCGACAACA CCGCAGCGCCGCTGCTGGTG AAGCCG CTCGAGCA-CGGCGCCGCGA TCGTGGTGTATTCGG Rpal_4730 5091401 - 5092708 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 3590 5092852 - 5092829 - T 90 -18.2 -3.09516 | GGCTGCACCATCTAA CCTCTCCCCG CGCG CGGGGAGAGG AGAGCGCGGCTACGG Rpal_4731 5094226 - 5092862 - | NADH dehydrogenase (quinone) TERM 3591 5093152 - 5093129 - G 76 -14.6 -3.14344 | gap 1, overlap 5093114 CAGCTTGGCGATGAA GCC-GCCTGCC GCC GGCAGGCCGGC GAGCGACAACAGCGA TERM 3592 5093904 - 5093867 - G 79 -12 -3.87815 | overlap 5093869 5093870 TTCGATGCCGAGAAA CAGCGTCGC-GGCGTGGC CGGC GCCA-GCCAGCGTCGCCG CACCGATCGCCACCA TERM 3593 5093910 - 5093869 - G 70 -11.3 -3.52906 | overlap 5093867 5093870 CGATGCCGAGAAACA GCGTCGCGGCGTGGCCGGC GCCA GCCAGCGTCGCCGCACCGA TCGCCACCAGCACCA TERM 3594 5093909 - 5093870 - G 72 -14.8 -2.71422 | overlap 5093867 5093869 GATGCCGAGAAACAG CGTCGCGGCGTGGCCGGC GCCA GCCAGCGTCGCCGCACCG ATCGCCACCAGCACC TERM 3595 5094066 - 5094040 - G 82 -17.2 -3.01712 | CGTCGTCGGTGAACA GCGCGCCCATCG GTG CGGCGGGCGCGC CGCCGCGCAGCAGCA Rpal_4732 5095679 - 5094237 - | proton-translocating NADH-quinone oxidoreductase, chain M TERM 3596 5095179 - 5095217 + g 83 -12.5 -4.07133 | gap 1, opp_overlap 5095170 5095171 CAACAAGCCGAAGCC GGCGACCGCGTTGAAGAT CAGG AATTTCAGCGCGG-CGCC TTCTTTGTCGCCATG Rpal_4733 5097739 - 5095670 - | proton-translocating NADH-quinone oxidoreductase, chain L TERM 3597 5096684 - 5096637 - G 71 -14 -2.86271 | opp_overlap 5096640, overlap 5096634 5096639 GGCTGACGATAACGA GAGCCGCGCAGCGCTTCGATCG CGGT CGAGCCACCCGCTGCGTGGCTC ATCACGCCGGCGCTG TERM 3598 5097405 - 5097387 - G 70 -6.6 -4.1711 | ATCACCGCGAAGAAA CGGCGCAG ATC CTGCAGCG GCTCGGATGCCATGT Rpal_4734 5098050 - 5097742 - | NADH-ubiquinone oxidoreductase chain 4L Rpal_4735 5098553 - 5098047 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Rpal_4736 5099071 - 5098550 - | NADH-quinone oxidoreductase, chain I Rpal_4737 5100027 - 5099068 - | NADH dehydrogenase (quinone) Rpal_4738 5102657 - 5100024 - | NADH-quinone oxidoreductase, chain G Rpal_4739 5103940 - 5102654 - | NADH dehydrogenase (quinone) Rpal_4740 5104425 - 5103937 - | NADH dehydrogenase (ubiquinone) 24 kDa subunit Rpal_4741 5106167 - 5104422 - | NADH dehydrogenase I, D subunit Rpal_4742 5106790 - 5106164 - | NADH-quinone oxidoreductase, B subunit TERM 3599 5106395 - 5106370 - G 75 -11.9 -3.64822 | overlap 5106387 AGCCGGGGATGTAAA CGTCGACCG GAATGAAG CGGTCGACG CCCTGCACCACCGAA Rpal_4743 5107176 - 5106787 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 Rpal_4744 5107621 - 5109420 + | ABC transporter related TERM 3600 5110799 - 5110765 - g 79 -2.9 -5.06414 | gap 2, overlap 5110794 GGTCGCGAAGAAAAA CGACACCG-CTT-CAGA AGG TCAGGAAGCCAGCGTCG ACCAGGCCGCGCCGA TERM 3601 5110875 - 5110858 - g 71 -9.1 -3.7732 | overlap 5110871 CGTCGATACCAACAA GCCGGCT ACCA AACCGGC CGCTGGCGCCAAGCC Rpal_4745 5109590 - 5111041 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 3602 5111098 - 5111123 + F 70 -11.8 -3.18199 | overlap 5111097 TTGATTCCATTGACC GCCGCCGCAC TGCGGC GTGCGGCCGC TTGCGTTCGGAGTTG Rpal_4746 5111313 - 5113004 + | AMP-dependent synthetase and ligase Rpal_4747 5113249 - 5113734 + | Redoxin domain protein TERM 3603 5114830 - 5114811 - g 76 -8.6 -4.27117 | gap 1 GCTCCAGAATACAAA GAGCGCGAC ATC GTC-CGCTC CGTCCCGAAAACCAA Rpal_4748 5113875 - 5115044 + | Integrase catalytic region Rpal_4749 5115618 - 5115151 - | Ribonuclease H TERM 3604 5115479 - 5115507 + g 70 -2.2 -4.59773 | overlap 5115475 TCCATCCGATTGTTG GTGGTGTGGGGC TCCCC GCCCTTCAGCTC TTTTTCGACGTCGCC Rpal_4750 5116598 - 5115615 - | homoserine kinase TERM 3605 5115788 - 5115772 - G 79 -11.5 -3.78775 | overlap 5115773 5115776 CGGGTCAGCAGGAAA CGCAGCG CGG CGCCGCG GGCGAGCAGCGGCAG TERM 3606 5116328 - 5116291 - G 73 -10.6 -3.72695 | ACCCCGTCGAGGAAA CTGATGATCGC-CGCCGG ACGG CCGGCGAGCG-TCGCCAG CGTACGGCCTTCGCG TERM 3607 5116685 - 5116663 - R 81 -12.6 -3.72576 | opp_overlap 5116670 5116684, overlap 5116649 5116648 CGGGGCGCGATGAAA GGGCGCCCCC GGG GGAGGCCCCC GGGTCTTGCCGGTTA TERM 3608 5116670 - 5116688 + r 88 -17.4 -3.07947 | opp_overlap 5116649 5116648 5116663, overlap 5116684 CGATGAAAGGGCGCC CCCGGGGG AGG CCCCCGGG TCTTGCCGGTTATTC TERM 3609 5116695 - 5116746 + r 83 -7.3 -4.63218 | gap 3, overlap 5116684 5116697 GCCCCCGGGTCTTGC CG-GTTATTCCGCGGCGTCG-GGGCG CAG CACCCGCGGCACCG-GGAAGAACTCG TTTTCTTCCGCCGCC Rpal_4751 5117660 - 5116698 - | hydroxymethylbutenyl pyrophosphate reductase TERM 3610 5117496 - 5117480 - G 80 -9.3 -4.25104 | overlap 5117481 GCTCCTCGACGAAAA TCGCGCC CTT GGCGCGC AGGCTGTCGACCACG TERM 3611 5117735 - 5117707 - H 70 -7.4 -4.10007 | gap 2 AGAACCGGCGGAAAA CG-GGCGCA-CGCC AAC GGCGTTGCGCAGCG GTCGAACGGGGTACG Rpal_4752 5117920 - 5118636 + | protein of unknown function DUF1013 TERM 3612 5118642 - 5118625 - T 81 -12.7 -3.75738 | opp_overlap 5118633 GACGAGGACGAAGAA GGCGGCT TCTG AGCCGCC GACCCTCACGGTCAT TERM 3613 5118681 - 5118724 + T 80 -14.6 -3.21416 | CAGGCGGGCGACCCA GTATTCCAGAGCGCGCGTTG CTGA CCGCGAGCTCTCTGGAATAC TTGATCCTCCGCCTG Rpal_4753 5119193 - 5118816 - | hypothetical protein TERM 3614 5119340 - 5119390 + r 71 -13.9 -2.61144 | gap 1, opp_overlap 5119327, overlap 5119339 5119337 GACGCGCCTTTGGTA GTACCCGCGGC-CTCATGCCTCGG ATCG CCGAAGCGCGAGCGCCGCGGAAAC GTCTTTCGACGCTCC Rpal_4754 5121070 - 5119688 - | hypothetical protein TERM 3615 5120350 - 5120334 - G 71 -9.3 -3.86015 | opp_overlap 5120349, overlap 5120321 CAGCCTTCGCAGAAA GCGTCCC GTA GGGGCGC GAGAAAAACGCTCGC TERM 3616 5120751 - 5120736 - G 90 -2.5 -5.40474 | AGGGCCTCAAAAAAA CTGAC TACATC GCCAG CAGGCTTCGATCCAT Rpal_4755 5122190 - 5122855 + | hypothetical protein Rpal_4756 5123207 - 5123836 + | hypothetical protein Rpal_4757 5124042 - 5124467 + | hypothetical protein Rpal_4758 5124761 - 5125225 + | hypothetical protein Rpal_4759 5126239 - 5125241 - | transcriptional regulator, AraC family Rpal_4760 5126757 - 5127929 + | hypothetical protein Rpal_4761 5128116 - 5128589 + | BLUF domain protein Rpal_4762 5129507 - 5128602 - | transcriptional regulator, LysR family Rpal_4763 5129600 - 5130241 + | YceI family protein Rpal_4764 5130317 - 5130907 + | nitroreductase Rpal_4765 5130950 - 5131753 + | Extradiol ring-cleavage dioxygenase class III protein subunit B Rpal_4766 5132760 - 5132128 - | Methyltransferase type 11 Rpal_4767 5132844 - 5133671 + | type III effector HopAG1 Rpal_4768 5133671 - 5134228 + | dual specificity protein phosphatase TERM 3617 5134249 - 5134261 + F 95 -10.5 -4.56597 | overlap 5134248 AGCGTGGACGCGATC CGCCG CAG CGGCG TTTTTCCGCAGCGCG Rpal_4769 5134361 - 5134810 + | phosphate-starvation-inducible E Rpal_4770 5135146 - 5135301 + | antenna complex alpha/beta subunit Rpal_4771 5135314 - 5135514 + | antenna complex alpha/beta subunit TERM 3618 5135536 - 5135588 + F 86 -15.6 -3.55548 | opp_overlap 5135541 5135543, overlap 5135538 5135543 TACTTCTTCGAAGCT GACAAGACGCCCGTCGTGGCCTCT CGTGC GGAGGTCCCGGCGGGTGTTTTGTA TTTGGCGGCATCTTG TERM 3619 5135538 - 5135586 + F 93 -18.2 -3.35224 | opp_overlap 5135541 5135543, overlap 5135536 5135543 CTTCTTCGAAGCTGA CAAGACGCCCGTCGTGGCCTCT CGTGC GGAGGTCCCGGCGGGTGTTTTG TATTTGGCGGCATCT TERM 3620 5135543 - 5135581 + F 100 -14.5 -4.78848 | opp_overlap 5135541 5135543, overlap 5135538 5135536 TCGAAGCTGACAAGA CGCCCGTCGTGGCCTCT CGTGC GGAGGTCCCGGCGGGTG TTTTGTATTTGGCGG Rpal_4772 5135983 - 5136201 + | hypothetical protein TERM 3621 5136226 - 5136248 + T 100 -18.4 -4.4078 | CACGCTTCATCGCCA CGCGCCGCGG CCT TCGCGGCGCG TTTTGATTCGGAGGA TERM 3622 5136612 - 5136646 + T 79 -16.5 -2.52676 | gap 1 AATGCGACGTCGAGA TTCCGGGTTCACGCGC TGAT GCGCGTGC-CCCGGAA TGACTTGGGAAGGTC Rpal_4773 5138338 - 5136734 - | hypothetical protein TERM 3623 5136767 - 5136787 + g 71 -3.2 -4.66163 | gap 1, overlap 5136739 5136775 GAACGCGTCGTTGAA GGCGCGTTC GCCG GGGC-CGCC TTTTTCGATGGCGAT Rpal_4774 5139668 - 5138376 - | Adenylosuccinate synthase Rpal_4775 5140275 - 5139964 - | type IV pilus assembly PilZ Rpal_4776 5140669 - 5141493 + | aldo/keto reductase Rpal_4777 5141940 - 5142416 + | ybaK/ebsC protein TERM 3624 5143342 - 5143363 + G 100 -11.5 -4.7173 | opp_overlap 5143324 CGGCGTCCGGCTGAT CGGCGCCAA CCGC TCGGCGCCG TTTTTCCATCTGGTG TERM 3625 5143472 - 5143517 + G 72 -14.5 -2.71144 | opp_overlap 5143497 GTGCTGACCGGCGTG GTGATCGCGGCGCGCAAGCCG AAGA CGGCGTGAGCGCCGAGGGCGC TACTTGACCGGGATG Rpal_4778 5142575 - 5143504 + | protein of unknown function DUF6 transmembrane Rpal_4779 5143930 - 5143517 - | hypothetical protein Rpal_4780 5144163 - 5145068 + | protein of unknown function DUF6 transmembrane TERM 3626 5145175 - 5145217 + F 81 -15.4 -2.99471 | GCGGCATGCAGCACT TCACCGGCCGCGGCTCCGGT GCC GCTGGCGCCGTAGCCGGCGA TGTCTCTCAAGATCC TERM 3627 5145457 - 5145414 - g 100 -23.2 -3.14132 | gap 1 GCGCGGGCTCAGCAA CGCGGCGCTCAACGGACCGCA ACC TGCGGACC-CCGAGCGCCGCG CCGACATCGCCAAGG Rpal_4782 5145217 - 5145567 + | methyl-accepting chemotaxis protein TERM 3628 5145774 - 5145737 - T 100 -15.6 -4.13014 | gap 1, overlap 5145739 5145742 CTTACACCCTCAAAA TACTACGGCGCCGCCGT GCAAG ACGGCGGCGCCG-AGCG CGTAACCGCAACTGA TERM 3629 5145772 - 5145739 - T 100 -20.4 -3.66256 | gap 1, overlap 5145737 5145742 TACACCCTCAAAATA CTACGGCGCCGCCGT GCAAG ACGGCGGCGCCG-AG CGCGTAACCGCAACT TERM 3630 5145770 - 5145742 - T 100 -23.2 -2.93891 | overlap 5145739 5145737 ACCCTCAAAATACTA CGGCGCCGCCGT GCAAG ACGGCGGCGCCG AGCGCGTAACCGCAA Rpal_4783 5147993 - 5145801 - | methyl-accepting chemotaxis sensory transducer TERM 3631 5146232 - 5146207 - G 74 -12.5 -3.58343 | gap 1, opp_overlap 5146219, overlap 5146208 GCCACCACCGCGAAA CCGCG-GCCGGC TTC GCCGGCGCGCGC CGCCTCGATGGTGGC TERM 3632 5146231 - 5146208 - G 75 -16 -2.74792 | gap 1, opp_overlap 5146219, overlap 5146207 CCACCACCGCGAAAC CGCG-GCCGGC TTC GCCGGCGCGCG CCGCCTCGATGGTGG Rpal_4784 5149094 - 5148123 - | Rubrerythrin Rpal_4785 5149275 - 5150630 + | conserved hypothetical protein; putative signal peptide Rpal_4786 5151163 - 5150825 - | hypothetical protein Rpal_4787 5152932 - 5151247 - | methyl-accepting chemotaxis sensory transducer TERM 3633 5153104 - 5153065 - R 100 -16.4 -4.06419 | overlap 5153068 CGCCCTTAGAAACAA CGACGCCCCTGGCAGACC GTCG GATCTGCCAGGGGCGAAA ATAACGTTGGCGGGA TERM 3634 5153101 - 5153068 - R 100 -24.7 -3.07135 | overlap 5153065 CCTTAGAAACAACGA CGCCCCTGGCAGACC GTCG GATCTGCCAGGGGCG AAAATAACGTTGGCG Rpal_4788 5154820 - 5153135 - | methyl-accepting chemotaxis sensory transducer TERM 3635 5154966 - 5154993 + r 93 -18.4 -3.30443 | opp_overlap 5154966 AGCGTGCAAACAAAA GCCCTCCCCCCG TTAC CGGGGAGAGGGC TTGATGTCGTCGTGC TERM 3636 5154993 - 5154966 - R 100 -20.6 -4.87133 | opp_overlap 5154966 AGCGTGCAAACAAAA GCCCTCCCCCCG TTAC CGGGGAGAGGGC TTGATGTCGTCGTGC TERM 3637 5155045 - 5155020 - R 71 -9 -3.72576 | GTGCTTGGGATCAAA CGCTGCGG CTGGGCTGCT CCGCAGCG GTTGCGATCCGACGG Rpal_4789 5156654 - 5155065 - | D-3-phosphoglycerate dehydrogenase Rpal_4790 5157996 - 5156824 - | phosphoserine aminotransferase TERM 3638 5158207 - 5158173 - R 95 -18.6 -3.41961 | opp_overlap 5158205, overlap 5158176 ACGAGCAGGAACGAA CAACGCGCGCCGGC TGGAATG GCCGACGCGCGCTG GAGATCAGTAAGTTC TERM 3639 5158204 - 5158176 - R 95 -16.7 -3.84246 | overlap 5158173 AGCAGGAACGAACAA CGCGCGCCGGC TGGAATG GCCGACGCGCG CTGGAGATCAGTAAG Rpal_4791 5160026 - 5158722 - | methyl-accepting chemotaxis sensory transducer Rpal_4792 5160525 - 5160001 - | putative PAS/PAC sensor protein Rpal_4793 5161168 - 5160698 - | GCN5-related N-acetyltransferase Rpal_4794 5161773 - 5161180 - | Glutathione S-transferase domain Rpal_4795 5162628 - 5161837 - | outer membrane insertion C-terminal signal TERM 3640 5162127 - 5162102 - G 77 -5.3 -4.63932 | overlap 5162108 GAGGCGCCAATAAAA GCATAAGGCAG GAAG CTGCCGAACGC ATAGCCGGCGCGCAG TERM 3641 5162743 - 5162721 - R 100 -20.6 -5.03994 | opp_overlap 5162715 5162715 TCCGACACAGAAAAA CGGCGCGGGA AGC TCCCGCGCCG TTAAGACTTGTAAAC Rpal_4796 5163649 - 5162774 - | hypothetical protein TERM 3642 5163888 - 5163916 + r 79 -15.3 -2.9462 | opp_overlap 5163888 5163889, overlap 5163885 GCGCACCAAAAAAAA TGGCTCCAGTTCC ATC GGAACCGGAGCCG TGATTTGAGTGGATC TERM 3643 5163916 - 5163888 - R 100 -15.3 -5.86061 | opp_overlap 5163888 5163885, overlap 5163889 GCGCACCAAAAAAAA TGGCTCCAGTTCC ATC GGAACCGGAGCCG TGATTTGAGTGGATC TERM 3644 5163915 - 5163889 - R 100 -18.8 -4.10552 | opp_overlap 5163888 5163885, overlap 5163888 CGCACCAAAAAAAAT GGCTCCAGTTCC ATC GGAACCGGAGCC GTGATTTGAGTGGAT Rpal_4797 5165224 - 5163959 - | major facilitator superfamily MFS_1 Rpal_4798 5166748 - 5165396 - | phosphoglucosamine mutase TERM 3645 5166311 - 5166335 + g 71 -12.1 -3.29144 | overlap 5166314 GCGGCGGGCGCGGCC GAGGCTGGCGC TCT GGGCCAGCTTC TTGTCGAGCGACTCG TERM 3646 5166314 - 5166332 + g 74 -10.2 -3.78934 | overlap 5166311 GCGGGCGCGGCCGAG GCTGGCGC TCT GGGCCAGC TTCTTGTCGAGCGAC TERM 3647 5166835 - 5166821 - R 73 -11.4 -3.57144 | opp_overlap 5166807 TGCCGTACGGCGAAA CGGCCT TAT AGGCCG AAATCGGTTACGGGG TERM 3648 5166916 - 5166862 - R 100 -12.3 -5.0538 | gap 1, opp_overlap 5166874 5166907, overlap 5166872 GGGGACTTCAAAAAA TGTAATCAA-AGATTACGCCGCCGAC CTCG GCCGGCGGCGTAATCTGCTGAAAATA CAGCCTTATCCGACC TERM 3649 5166905 - 5166872 - R 100 -23.3 -4.00683 | opp_overlap 5166874, overlap 5166862 AAAAATGTAATCAAA GATTACGCCGCCGAC CTCG GCCGGCGGCGTAATC TGCTGAAAATACAGC TERM 3650 5166874 - 5166903 + r 86 -17.9 -2.79183 | opp_overlap 5166872 5166862 AAATGTAATCAAAGA TTACGCCGCCGAC CTCG GCCGGCGGCGTAA TCTGCTGAAAATACA Rpal_4799 5167111 - 5166950 - | hypothetical protein TERM 3651 5167051 - 5167064 + g 89 -3.8 -5.33331 | CCAACCCCTCATTGA GCTG TTCTTC CAGC TTTTTCTTCTCTTTG TERM 3652 5167169 - 5167151 - H 81 -10.2 -4.18494 | GACTTGGACGGAAAA CGCGCTGC AAC GCAGCGAG TTCCAGGCTTCGCCG Rpal_4800 5167276 - 5168415 + | L-lactate dehydrogenase (cytochrome) Rpal_4801 5168606 - 5169421 + | Enoyl-CoA hydratase/isomerase TERM 3653 5169493 - 5169537 + F 100 -23 -3.60296 | gap 2 GGCGACACTGTGGGG CGACGCGCAGGCCGACTGCAGC CCT GCTGCAGACGG-CTGCGCG-CG TTTGCCATCGCAGTC TERM 3654 5169730 - 5169682 - g 72 -13.8 -3.04792 | CGATCATCTGCAAGA TCGCGGTACGCGCCGGATTCGA ACCGG TCGAAGCCGGCACGCTCGACGA GGTCGTCGAGCTGAC Rpal_4802 5169570 - 5170022 + | response regulator receiver protein Rpal_4803 5170870 - 5170034 - | shikimate 5-dehydrogenase TERM 3655 5170991 - 5170944 - R 79 -9.1 -4.19238 | gap 3, overlap 5170945 GCGTCAATCGCAAAA CGC-G-CCGCCGCGACG-GAAGTC GGT GGCCTCACGCCGAGGCGGGCTGCG GCGCGGTCGCCTCCT Rpal_4804 5172723 - 5170972 - | sulphate transporter Rpal_4805 5173034 - 5172765 - | transcriptional regulator, XRE family TERM 3656 5173141 - 5173105 - R 100 -23.9 -5.38326 | opp_overlap 5173095 TCAAGCAAATAAAAA GCGGCTGGAGTGATGTC TGA GACATCAGTCCAGCCGC TTCGCAGCAGTCATA Rpal_4806 5175256 - 5173205 - | small GTP-binding protein TERM 3657 5174604 - 5174632 + g 70 -11.7 -3.44622 | opp_overlap 5174627, overlap 5174589 GCGTCGTCGTGATCG GCGAGCTTCTCGA GCA TCGAGAACCGCGC TTCCTTCTCGCGGTC TERM 3658 5174879 - 5174864 - G 83 -3.2 -5.1356 | opp_overlap 5174864, overlap 5174858 GTTCAGGAACAAAAA TCTGGG AATG CCGAGA TCTTCGAGTTCGCGC TERM 3659 5175429 - 5175396 - R 100 -17.5 -4.84274 | opp_overlap 5175397, overlap 5175397 CAAGGACACCAAAAA TTTGCGCTGCGACGC GTTT GCATCGCAGCGCAAT GTTGCAAAACAGGAA TERM 3660 5175397 - 5175428 + r 91 -18.8 -3.01712 | opp_overlap 5175397 5175396 AAGGACACCAAAAAT TTGCGCTGCGACGC GTTT GCATCGCAGCGCAA TGTTGCAAAACAGGA TERM 3661 5175428 - 5175397 - R 100 -21 -3.4948 | opp_overlap 5175397, overlap 5175396 AAGGACACCAAAAAT TTGCGCTGCGACGC GTTT GCATCGCAGCGCAA TGTTGCAAAACAGGA Rpal_4807 5175941 - 5175468 - | protein of unknown function DUF992 TERM 3662 5176142 - 5176123 - R 100 -16.4 -4.70659 | opp_overlap 5176123 GTCCAGACGCAAAAA GGGCCCGC GCTG GCGGGCCC TTTTCGTTACGACGC TERM 3663 5176123 - 5176142 + r 100 -16.4 -4.4078 | opp_overlap 5176123 GTCCAGACGCAAAAA GGGCCCGC GCTG GCGGGCCC TTTTCGTTACGACGC Rpal_4808 5176696 - 5176181 - | protein of unknown function DUF992 TERM 3664 5176771 - 5176741 - R 100 -9 -4.84359 | opp_overlap 5176745 CGACGGCGACAAAAA GGAAGCGTCTTGTC CAA AACAAGGCGCTTTC GCAGTTTTGGAACGA TERM 3665 5176745 - 5176767 + r 70 -9.9 -3.66666 | opp_overlap 5176741 GGCGACAAAAAGGAA GCGTCTTGT CCAAA ACAAGGCGC TTTCGCAGTTTTGGA Rpal_4809 5178023 - 5176821 - | aminotransferase class I and II TERM 3666 5176982 - 5176995 + g 72 -4.5 -4.56597 | CGGTGACGAAGTCCT GGTCG GTCT CGATC TTTTTGCCCGACGGC TERM 3667 5177071 - 5177055 - G 70 -11.5 -3.41125 | overlap 5177059 CGGATAGACGTAGAA CGCACCC TCG GGGCGCG GGCAGTCGATCCCGG TERM 3668 5178736 - 5178765 + G 79 -10.7 -3.9534 | gap 1, overlap 5178738 GTTCTTCGAGCAGCA CGCGCTCGAGCCGA ATA TCGGCTCG-GCGTA TTTCTGGCTGTGCCT TERM 3669 5178738 - 5178763 + G 83 -15.5 -3.56568 | gap 1, overlap 5178736 TCTTCGAGCAGCACG CGCTCGAGCCGA ATA TCGGCTCG-GCG TATTTCTGGCTGTGC Rpal_4810 5178437 - 5179090 + | Glutathione S-transferase domain TERM 3670 5179186 - 5179204 + F 76 -10.2 -3.90856 | opp_overlap 5179186 5179182 5179187, overlap 5179187 ACGACAATCCACAAA TGCCGGTG ATT CGCCGGCG TTTGGTTCGAGGATT Rpal_4811 5179227 - 5179418 + | hypothetical protein Rpal_4812 5179509 - 5180672 + | glucose sorbosone dehydrogenase TERM 3671 5180817 - 5180859 + F 91 -9.6 -4.56597 | overlap 5180818 5180819 CGCCGATCAACGTCC CCAGCGGTCCCCGTCAGTCG CCG CGTCTGACCGGGGCCGCACC TTTTTGAGCGGCGCA TERM 3672 5180818 - 5180858 + F 74 -13.1 -3.33744 | overlap 5180817 5180819 GCCGATCAACGTCCC CAGCGGTCCCCGTCAGTCG CCG CGTCTGACCGGGGCCGCAC CTTTTTGAGCGGCGC TERM 3673 5180819 - 5180857 + F 80 -16.6 -2.60032 | overlap 5180818 5180817 CCGATCAACGTCCCC AGCGGTCCCCGTCAGTCG CCG CGTCTGACCGGGGCCGCA CCTTTTTGAGCGGCG TERM 3674 5181179 - 5181207 + G 76 -14.5 -3.1552 | overlap 5181177 GACCTGGCCGGTGTT CGGCGCGCTGGCA CGC TGGCAGCGCACCG TGTTCATCGATCGCC Rpal_4813 5180886 - 5181734 + | phospholipid/glycerol acyltransferase Rpal_4814 5182460 - 5181741 - | DnaB domain protein helicase domain protein Rpal_4815 5182741 - 5183682 + | aldo/keto reductase TERM 3675 5183703 - 5183754 + F 84 -15.8 -3.35197 | gap 1 GGCGGCGCCTCCTCA CCCCGTCATTCCGGG-GCGCGCAGT GAA GCTGCGCGAACCCGGAATCTCGAGG TTAGTATGTATGGAG TERM 3676 5183999 - 5184040 + G 74 -8 -4.2558 | gap 2, overlap 5184004 5184018 TCCGACACGCCTGCG CT-GCCGCCGC-GTCGGC TGATCTGC GCCGGCTGCGGCGCCGAG TTTTCGTGCACGATG Rpal_4816 5183963 - 5184172 + | hypothetical protein Rpal_4817 5184169 - 5184876 + | HAD-superfamily hydrolase, subfamily IA, variant 3 TERM 3677 5186015 - 5185981 - g 86 -17.3 -3.26947 | gap 2, opp_overlap 5186000 CAAGCCGGAGATCAA GCTGGCGATGCCGCCGA CCT TCGGCGGCA-C-CCAGC GGCTGCCGCGCCTCG Rpal_4819 5185565 - 5186356 + | Enoyl-CoA hydratase/isomerase Rpal_4820 5187039 - 5186344 - | Glutathione S-transferase domain TERM 3678 5187215 - 5187246 + r 83 -16.6 -2.91274 | gap 1 ATGCATCGACCGTCA TTCCGGG-GCGCCGC GCA GCGGCGAACCCGGAA TCTCGTTGGACTACC Rpal_4821 5189322 - 5187337 - | beta-lactamase domain protein Rpal_4822 5189478 - 5189347 - | hypothetical protein TERM 3679 5189624 - 5189581 - g 73 -12.2 -3.42503 | opp_overlap 5189622 GCCGAAGATCTACAA GCCGCGGCCCAGGCCGGCGT GATC ACCCCGGCGCAGGAGGCGGC GCTCCGCGCCTTCCT TERM 3680 5190200 - 5190239 + G 75 -12 -3.69621 | GCGCCGTCATGGTGA TCGCCGCCGTGATCGTGC ATCT GCGCCAGCGCAGCGGCGA TTTCGCATTCTGGCT Rpal_4823 5189554 - 5190606 + | putative membrane protein of unknown function TERM 3681 5193317 - 5193300 - g 74 -10.5 -3.86194 | AAGGTCGCCGACAAA GCCGGCA GCTA CGCCGGC AACAAGCGCTATGGC Rpal_4824 5190666 - 5193701 + | excinuclease ABC, B subunit Rpal_4825 5193792 - 5194025 + | Domain of unknown function DUF1902 Rpal_4826 5194026 - 5194220 + | YcfA family protein TERM 3682 5194600 - 5194622 + F 91 -16.4 -3.66018 | overlap 5194578 CGGCATTCCGCTTGC GCTATTCCCC AAT GGGGAATAGC TTGTTCCGATGATCC Rpal_4827 5194631 - 5194909 + | plasmid maintenance system killer Rpal_4828 5194921 - 5195226 + | plasmid maintenance system antidote protein, XRE family TERM 3683 5195216 - 5195235 + T 78 -3.4 -5.03314 | overlap 5195223 GCGTCCGCGTGCTCG CCGCAGAG TAGA CGCTACGG TTTTTTGGCCATGCG Rpal_4829 5195654 - 5195340 - | hypothetical protein TERM 3684 5195989 - 5196011 + r 100 -17.7 -4.28774 | opp_overlap 5195989 GGCCGCAACAAAAAA GGGCGGCGC ATGCG GCGCCGCCC TTTTCAATTAGCTCG TERM 3685 5196011 - 5195989 - R 100 -17.7 -5.4505 | opp_overlap 5195989 GGCCGCAACAAAAAA GGGCGGCGC ATGCG GCGCCGCCC TTTTCAATTAGCTCG Rpal_4830 5197335 - 5196082 - | acetyl-CoA acetyltransferase Rpal_4831 5197549 - 5197983 + | hypothetical protein TERM 3686 5198276 - 5198248 - f 95 -13.1 -4.38154 | opp_overlap 5198266, overlap 5198258 AGAGGCTGCAGAAAA GCCGGCAAAACCA TGG CGGCTTGGCCGGC TGGATGCCTGACAAT TERM 3687 5198334 - 5198318 - f 71 -9.5 -3.75153 | GCCTGCGAATCTAAA TTTGTGC AAT GCACAAA AGACGATTGCAATTA Rpal_4832 5198467 - 5198898 + | hypothetical protein TERM 3688 5199345 - 5199318 - g 70 -10.6 -3.61517 | gap 1 AGCTGCGGTCAACAA CGTCAACTCGCTG ATC CAGCGCGTTG-CG GGCACCTCGCTCGGC Rpal_4833 5199106 - 5199546 + | hypothetical protein TERM 3689 5199605 - 5199626 + T 100 -12.3 -5.11613 | opp_overlap 5199600 5199605 CTTGAAACGACAAAA GCAGCCATC GCGA GGTGGCTGC TTTTTTGCGTGCTAT TERM 3690 5199626 - 5199605 - T 95 -10.1 -4.61566 | opp_overlap 5199605, overlap 5199600 CTTGAAACGACAAAA GCAGCCATC GCGA GGTGGCTGC TTTTTTGCGTGCTAT Rpal_4834 5199842 - 5199696 - | conserved hypothetical protein; putative signal peptide Rpal_4835 5200473 - 5199991 - | MaoC domain protein dehydratase Rpal_4836 5200964 - 5200482 - | MaoC domain protein dehydratase Rpal_4837 5201050 - 5201343 + | hypothetical protein TERM 3691 5201355 - 5201405 + T 82 -14.2 -3.28712 | opp_overlap 5201383 5201384 GTGACGACAGCCACC TCATCGTCATTCCGGGG-CGCGAA CATAA TTCGCGACCCCGGAATCCCGA-GA TTGTAGCGCACAGAG TERM 3692 5201451 - 5201422 - T 78 -14.3 -3.00022 | gap 1, overlap 5201384 5201383 TGTAGCGCACAGAGA TTCCGGGTTCGCGC TTC GCGCGC-CCCGGAA TGACTCGCTGAAAGG Rpal_4838 5202593 - 5201496 - | GTP-binding protein YchF TERM 3693 5202058 - 5202025 - G 77 -16.7 -2.53382 | overlap 5202011 5202054 AGCATCCTGAACGCA CGCTCTTCCTCGGGC TTGC GCTCGAGGAAGCGCG CCGGCTTGCCGTCGC TERM 3694 5202075 - 5202054 - G 72 -12.9 -3.14132 | overlap 5202011 5202025 CTTGCGCTCGAGGAA GCGCGCCGG CTTG CCGTCGCGC AGCAGGGTGAGCGCG Rpal_4839 5203341 - 5202721 - | Aminoacyl-tRNA hydrolase TERM 3695 5203253 - 5203220 - G 100 -16.8 -4.07568 | gap 1, opp_overlap 5203219 5203220, overlap 5203223 GTCTCGCCCTGAAAA CGACGGCGCCATGGC GAGAA GCCATGACGCCG-CG CGATTTCGTCGATGA TERM 3696 5203251 - 5203223 - G 86 -18.2 -3.08032 | opp_overlap 5203220 5203219, overlap 5203220 TCGCCCTGAAAACGA CGGCGCCATGGC GAGAA GCCATGACGCCG CGCGATTTCGTCGAT Rpal_4840 5204055 - 5203363 - | ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 TERM 3697 5203457 - 5203477 + g 74 -10.4 -3.78235 | gap 1, overlap 5203457 GCAGCAGCGGCAGCA GG-CGCGGC ACCC GCCGCGGCC TTGTCTTCGTTGTAG TERM 3698 5204108 - 5204082 - R 72 -4.2 -4.59773 | overlap 5204088 5204097 CTTGATCTGTAAAAA GTTAAAGGCCGC AAA GCGGCCCATTGC ACACGTCGCGGCAAG TERM 3699 5204102 - 5204088 - R 86 -12.8 -3.99805 | overlap 5204082 5204097 CTGTAAAAAGTTAAA GGCCGC AAA GCGGCC CATTGCACACGTCGC Rpal_4841 5204632 - 5204354 - | protein of unknown function DUF526 TERM 3700 5205483 - 5205535 + G 77 -16.3 -2.51471 | gap 1, overlap 5205482 CTGTTCGTCATCCTG GCGCTGATGATCCGCGCCGG-CGC CCTCAA GCGGCCGGGCCTGATCATCGGCGC GTTCCTGACCTTCTA Rpal_4842 5204886 - 5205746 + | prolipoprotein diacylglyceryl transferase Rpal_4843 5205743 - 5206882 + | protein of unknown function DUF185 Rpal_4844 5206879 - 5207652 + | protein of unknown function DUF152 Rpal_4845 5207885 - 5208493 + | hypothetical protein Rpal_4846 5208662 - 5209615 + | ribose-phosphate pyrophosphokinase TERM 3701 5209799 - 5209770 - T 78 -14.3 -3.00498 | gap 1 CACAGGGGATATAGA TTCC-GGGCTCGCG CTT CGCGCGCCCCGGAA TGACGGAATAGTTCG Rpal_4847 5210349 - 5209816 - | 67-dimethyl-8-ribityllumazine synthase TERM 3702 5210462 - 5210490 + H 75 -4.5 -4.77165 | opp_overlap 5210452, overlap 5210444 GCGAATTCCGCGCCC CGGACTCGGCT GGCGCGA ATCCGATTCCG TTTTGTTCTCGCGCC Rpal_4848 5210705 - 5211205 + | Protein of unknown function DUF1790 Rpal_4849 5211202 - 5211630 + | GCN5-related N-acetyltransferase TERM 3703 5211638 - 5211653 + F 72 -11.8 -3.30124 | CCTTCTGATCGCTGC GCGCGG GGCA CCGCGC TTGTGACCCCTGCGA TERM 3704 5212133 - 5212112 - g 70 -12.9 -3.04144 | opp_overlap 5212114 GGGCGATGCCGAACA CCCCGGCCG CGAT CGGCCGCGG CATTACCGTCGCGGT TERM 3705 5212114 - 5212157 + G 95 -20.3 -2.62184 | gap 1, opp_overlap 5212112 GCGATGCCGAACACC CCGGCCGCGATCGGCCGCGG CATTA CCGTCGC-GGTCGCGGCCGG TAATGTGACGGCCGC Rpal_4850 5211727 - 5212560 + | pyrroline-5-carboxylate reductase Rpal_4851 5214114 - 5212726 - | integral membrane sensor signal transduction histidine kinase TERM 3706 5214319 - 5214345 + r 93 -19.5 -3.10164 | GCCGAAGCGCGGCAA CCTCTCCCCGC GCAGG GCGGGGAGAGG TTGCGTCGTGCATGG Rpal_4852 5215115 - 5214393 - | two component transcriptional regulator, winged helix family Rpal_4853 5215663 - 5215112 - | transcriptional regulator, MarR family Rpal_4854 5215946 - 5217058 + | branched-chain amino acid aminotransferase TERM 3707 5217152 - 5217096 - T 89 -17.3 -3.14132 | overlap 5217100 5217127 5217129 5217131 5217132 CGGGGCGCTGACGAA GTCAGCGAACCCGGAATCTCGCTCCGC AGA ACATATCGAGATTCCGGGTTCGCGAGC TCCGCTCGCACCCCG TERM 3708 5217148 - 5217100 - T 100 -23.3 -2.56596 | overlap 5217096 5217127 5217129 5217131 5217132 GCGCTGACGAAGTCA GCGAACCCGGAATCTCGCTCCGC AGA ACATATCGAGATTCCGGGTTCGC GAGCTCCGCTCGCAC TERM 3709 5217175 - 5217132 - T 74 -14.6 -2.50074 | gap 1, overlap 5217100 5217096 5217131 5217129 5217127 CTCCGCAGAACATAT CGAGATTCCGGGTTCGCGAGC TCC GCTCGC-ACCCCGGAATGACG GCGGGTGCGCTACCT Rpal_4855 5218972 - 5217185 - | DNA mismatch repair protein MutL Rpal_4856 5219626 - 5219207 - | Class I peptide chain release factor TERM 3710 5219702 - 5219725 + r 90 -18.2 -3.10715 | GAGACGCGTGCGCCC CCTCTCCCCG CGCG CGGGGAGAGG TTCGGTCGTGCTCGG Rpal_4857 5221210 - 5219777 - | peptidase M16 domain protein TERM 3711 5221192 - 5221149 - G 72 -7.2 -4.25283 | overlap 5221150 AGCCGCTGAGCAAAA CCGGCGCGGGTCACGACGAC AGCA GCGGTCACACGCCGCGCCGA CAACAGATCGATGCT Rpal_4858 5222598 - 5221207 - | peptidase M16 domain protein Rpal_4859 5223485 - 5222769 - | putative exported protein of unknown function TERM 3712 5223088 - 5223120 + g 73 -14.1 -3.18274 | TGCGACGGCGTCAGC GGCTGGGCCGATTCC CAC GGATTCGGCTTGGCC TTGGCTTCGGCTGCC Rpal_4860 5224060 - 5223566 - | lipoprotein signal peptidase Rpal_4861 5227233 - 5224219 - | isoleucyl-tRNA synthetase TERM 3713 5226212 - 5226164 - G 74 -15.4 -2.60075 | opp_overlap 5226137, overlap 5226163 GCGGTGTGAACGAAG CCGGTGCCGGTG-TCGTCGGTGAC GTG ATCACCGTCGAGCAGCGGCA-CGG TGAACTCATAGCCGC Rpal_4862 5227988 - 5227416 - | transferase hexapeptide repeat containing protein TERM 3714 5227930 - 5227965 + g 70 -4 -4.50058 | opp_overlap 5227949, overlap 5227931 5227932 TCGGCGGCGAGCTCC GG-GCTGCCGGGGCGA TACAGC TCGCCC-GCCAGCATC TTTTCCTTCTCGGTC Rpal_4863 5228953 - 5227985 - | riboflavin biosynthesis protein RibF Rpal_4864 5229771 - 5229076 - | ribonuclease T2 Rpal_4865 5230337 - 5229876 - | putative exported protein of unknown function Rpal_4866 5230504 - 5230794 + | hypothetical protein Rpal_4867 5230804 - 5231337 + | conserved hypothetical protein; putative signal peptide TERM 3715 5231377 - 5231335 - f 89 -14.8 -3.92324 | overlap 5231338 CTGCCCAAGAGCAAA TGAGGCGGACTTGCTCGGCC AAT GGCCGAGCAAGTCGTGCGCA AAAGCCACACCCGGG TERM 3716 5231374 - 5231338 - f 81 -15.1 -3.02568 | overlap 5231335 CCCAAGAGCAAATGA GGCGGACTTGCTCGGCC AAT GGCCGAGCAAGTCGTGC GCAAAAGCCACACCC Rpal_4868 5231479 - 5231859 + | hypothetical protein TERM 3717 5232314 - 5232295 - g 77 -10.6 -3.84246 | overlap 5232296 TGCCGAATGAGGAAA TCCGCCGC AGCG GCGGCGGC ACGCTCGGCGACCTG TERM 3718 5232313 - 5232296 - g 71 -14.1 -2.90227 | overlap 5232295 GCCGAATGAGGAAAT CCGCCGC AGCG GCGGCGG CACGCTCGGCGACCT Rpal_4869 5231979 - 5234333 + | TonB-dependent receptor TERM 3719 5234493 - 5234523 + F 74 -10.3 -3.78597 | opp_overlap 5234485 5234482, overlap 5234494 CGAACGAGACGCTGA GTGGCGTCGCCGG ATTTG TCGGCGGCGCCGG TTTCGATTACTGACT TERM 3720 5234494 - 5234522 + F 74 -13.8 -2.86676 | opp_overlap 5234485 5234482, overlap 5234493 GAACGAGACGCTGAG TGGCGTCGCCGG ATTTG TCGGCGGCGCCG GTTTCGATTACTGAC Rpal_4870 5234582 - 5234938 + | hypothetical protein TERM 3721 5235294 - 5235273 - g 71 -9.3 -3.81137 | overlap 5235274 GCCCAAAGACTCAAA CCGCAGCCC GGGC GCGCCGCGG GGCAGCGACAGCCTC Rpal_4871 5235086 - 5237359 + | TonB-dependent receptor TERM 3722 5237395 - 5237372 - T 90 -18.2 -2.88579 | opp_overlap 5237376, overlap 5237376 TGAAGTCGCCACACA GCAAGGCGCG TCAG CGCGCCTTGC TCCAATCCGGGCGGA TERM 3723 5237391 - 5237376 - T 72 -11.8 -3.32022 | opp_overlap 5237376, overlap 5237372 GTCGCCACACAGCAA GGCGCG TCAG CGCGCC TTGCTCCAATCCGGG TERM 3724 5237376 - 5237391 + T 70 -11.8 -3.16564 | opp_overlap 5237376 5237372 GTCGCCACACAGCAA GGCGCG TCAG CGCGCC TTGCTCCAATCCGGG Rpal_4872 5237924 - 5237382 - | GCN5-related N-acetyltransferase Rpal_4873 5239644 - 5237941 - | MscS Mechanosensitive ion channel TERM 3725 5238518 - 5238491 - G 79 -11.2 -3.89614 | opp_overlap 5238496 5238505 CCGAACTTGCAGAAA TCGCCGACCCGC ATCG GCTGGTCGGTGA CCAGAGTCAGGCTGC TERM 3726 5239372 - 5239392 + g 86 -8.9 -4.7497 | CTGGAGCTGCTGTGC GACGCTCGG GCC CCAGGCGTC TTTTTCCTGGCTGAG Rpal_4874 5240361 - 5239873 - | NUDIX hydrolase Rpal_4875 5240496 - 5241377 + | metallophosphoesterase Rpal_4876 5241974 - 5241423 - | hypothetical protein TERM 3727 5242174 - 5242127 - R 100 -19.8 -4.07687 | opp_overlap 5242130, overlap 5242128 5242130 AGGGCCCCCCGAAAA CGACGATGGCGGCCCTGCCGGG TTGC CCCGACAGGACCGCCAAAGTCC TTGGACGTCTTCTAT TERM 3728 5242173 - 5242128 - R 100 -23.3 -3.04398 | opp_overlap 5242130, overlap 5242127 5242130 GGGCCCCCCGAAAAC GACGATGGCGGCCCTGCCGGG TTGC CCCGACAGGACCGCCAAAGTC CTTGGACGTCTTCTA TERM 3729 5242171 - 5242130 - R 93 -20.1 -3.08032 | opp_overlap 5242130, overlap 5242128 5242127 GCCCCCCGAAAACGA CGATGGCGGCCCTGCCGGG TTGC CCCGACAGGACCGCCAAAG TCCTTGGACGTCTTC TERM 3730 5242130 - 5242171 + r 78 -15.7 -2.73468 | opp_overlap 5242130 5242128 5242127 GCCCCCCGAAAACGA CGATGGCGGCCCTGCCGGG TTGC CCCGACAGGACCGCCAAAG TCCTTGGACGTCTTC Rpal_4877 5242454 - 5242239 - | hypothetical protein Rpal_4878 5244113 - 5242479 - | isocitrate lyase and phosphorylmutase Rpal_4879 5244327 - 5245769 + | transcriptional regulator, XRE family Rpal_4880 5246048 - 5246947 + | hypothetical protein TERM 3731 5247166 - 5247156 - g 79 -8.2 -4.32857 | overlap 5247157 5247158 GGCCTGAAACAGAAA GCCG TTG CGGC CGGGGTGTCGCAAGG Rpal_4881 5247003 - 5248331 + | lytic murein transglycosylase Rpal_4882 5248413 - 5249597 + | Extracellular ligand-binding receptor Rpal_4883 5249857 - 5250621 + | ABC transporter related TERM 3732 5251369 - 5251331 - g 72 -5.3 -4.41494 | gap 2 CACCGTGAAGGAAAA CCTG-ATCC-TCGCGGCGC GCG ACGGCGAGATGGATGCAGG GCGCCTCGACTGGAT Rpal_4884 5251035 - 5251757 + | ABC transporter related Rpal_4885 5251754 - 5252779 + | inner-membrane translocator Rpal_4886 5252776 - 5253843 + | inner-membrane translocator Rpal_4887 5254215 - 5254523 + | hypothetical protein TERM 3733 5254585 - 5254552 - f 86 -14 -3.83205 | gap 2, opp_overlap 5254583 5254584, overlap 5254554 5254557 ACGCGCGATAGCAAA GACAGGTTCGGCGGCG CTCC CGCCGCCGAA-CTG-C GGACCGGCAGGAATC TERM 3734 5254584 - 5254554 - f 95 -17.7 -3.5032 | gap 1, opp_overlap 5254583, overlap 5254552 5254557 GCGCGATAGCAAAGA CAGGTTCGGCGGCG CTCC CGCCGCCGAA-CTG CGGACCGGCAGGAAT TERM 3735 5254582 - 5254557 - f 91 -20.5 -2.58959 | overlap 5254554 5254552 CGATAGCAAAGACAG GTTCGGCGGCG CTCC CGCCGCCGAAC TGCGGACCGGCAGGA Rpal_4888 5254767 - 5255867 + | NADH:flavin oxidoreductase/NADH oxidase TERM 3736 5255969 - 5255936 - T 84 -17.5 -2.78463 | gap 1, opp_overlap 5255907 ATTGGTGCGACGAGA TTCCGGGTTCGCTCGC TCC GCGAGCGC-CCCGGAA TGACTCTGGGAGAGA TERM 3737 5256002 - 5256059 + T 70 -12.7 -2.87136 | gap 1, opp_overlap 5256056 5256057 TTACTGACCACCTCT CCACTCGT-CATTCCGGTCCTGCGCCGC GCA GCGGCGCAGGACCGGAATCCATAAGCCC TGTGCTCGTTACTGG TERM 3738 5256175 - 5256208 + T 81 -11.7 -3.84246 | opp_overlap 5256182, overlap 5256182 GTGCCAAGGACGCAA TGAAAAAGGCCGGGA TCGC TCCCGGCCTTTCGCG TTCTTGGTTGCTGGT TERM 3739 5256201 - 5256182 - T 100 -15 -4.88407 | opp_overlap 5256175 5256182 GGACGCAATGAAAAA GGCCGGGA TCGC TCCCGGCC TTTCGCGTTCTTGGT TERM 3740 5256182 - 5256201 + T 88 -15 -3.72453 | opp_overlap 5256182, overlap 5256175 GGACGCAATGAAAAA GGCCGGGA TCGC TCCCGGCC TTTCGCGTTCTTGGT Rpal_4889 5258024 - 5256234 - | putative periplasmic binding ABC transporter protein, putative sugar binding precursor TERM 3741 5258055 - 5258079 + r 79 -13.6 -3.45571 | opp_overlap 5258053 TTGAGCGACACCATT CAGGTCCGGG TTGAT CCCGGATCTG TTCCTCTTTCGCCGG Rpal_4890 5258426 - 5258097 - | hypothetical protein TERM 3742 5258322 - 5258267 - G 70 -10.2 -3.6269 | gap 1, overlap 5258265 5258268 TCAGCGACAGAAACA GCCGGTCGCCGCGCGTCGTCGGAATCC GCA GGATGCCGACG-CGCTCGACCTCGGGA TCAACCACCGCGAGC Rpal_4891 5259240 - 5258434 - | binding-protein-dependent transport systems inner membrane component Rpal_4892 5260142 - 5259240 - | binding-protein-dependent transport systems inner membrane component Rpal_4893 5261242 - 5260142 - | ABC transporter related Rpal_4894 5262334 - 5261255 - | ABC transporter related Rpal_4895 5263866 - 5262331 - | FAD dependent oxidoreductase Rpal_4896 5264859 - 5264062 - | transcriptional regulator, DeoR family TERM 3743 5264587 - 5264620 + g 73 -6.5 -4.43307 | CAGCGAGCAGCCGTT GGGAATCTGCGCCGC TGCA GCTGCGCCGATCGCC TTCTTTTCTTCGGCG TERM 3744 5264786 - 5264828 + g 72 -11.4 -3.57263 | opp_overlap 5264786 AAGCGCCGCACCAGA TCCTCGACCATCACCCG-GC CCGAA GCGCGGGCGA-GGTTGAGGA TTTCAGACTGGCGAT TERM 3745 5265204 - 5265173 - g 100 -10 -5.0065 | opp_overlap 5265172 5265170, overlap 5265174 GAGCCAGAAAGAAAA GGCCGCCGGGCGAA TGAC CTCGTCCGACGGCA ATGTTGATCAGACCA TERM 3746 5265203 - 5265174 - g 77 -13.5 -3.59305 | opp_overlap 5265172 5265170, overlap 5265173 AGCCAGAAAGAAAAG GCCGCCGGGCGAA TGAC CTCGTCCGACGGC AATGTTGATCAGACC Rpal_4897 5264958 - 5265278 + | hypothetical protein TERM 3747 5265563 - 5265545 - T 100 -13.1 -4.8622 | opp_overlap 5265545 TCCTTGAATGAAAAA GCCCGGC ACAAG GCCGGGC TTTTGGGAAACTAGC TERM 3748 5265545 - 5265563 + T 86 -13.1 -4.08767 | opp_overlap 5265545 TCCTTGAATGAAAAA GCCCGGC ACAAG GCCGGGC TTTTGGGAAACTAGC Rpal_4898 5266153 - 5265995 - | hypothetical protein Rpal_4899 5267291 - 5266674 - | hypothetical protein Rpal_4900 5267923 - 5267309 - | transcriptional regulator, TetR family Rpal_4901 5271078 - 5267941 - | acriflavin resistance protein Rpal_4902 5272206 - 5271100 - | efflux transporter, RND family, MFP subunit Rpal_4903 5272805 - 5272326 - | 3-demethylubiquinone-9 3-methyltransferase Rpal_4904 5275533 - 5272912 - | multi-sensor hybrid histidine kinase TERM 3749 5274274 - 5274312 + g 76 -14.6 -3.21416 | GTTGAGGATGCGCAG CAGGTCGTCACCGGAATC GCG GATCGTGGTGACGGCCTG TTGCTGCTCGGGATC Rpal_4905 5275925 - 5276140 + | CsbD family protein TERM 3750 5276180 - 5276210 + T 83 -16.3 -2.87132 | gap 1, opp_overlap 5276187, overlap 5276167 5276187 GCGGTCGTCAGTAGG TGC-AAGACCGGCC CTCG GGCCGGTCTTCGCA TGTCTGGAAGAGCCC Rpal_4906 5277831 - 5276245 - | gamma-glutamyltransferase Rpal_4907 5278079 - 5278294 + | SlyX family protein TERM 3751 5278437 - 5278387 - T 76 -8.3 -4.17048 | opp_overlap 5278363 5278390 5278429 CCGTCGTGAAAACAA TCTCGG-GATTCCGGGTTCGCTCAC TGC GTGAGCGC-CCCGGAATGACCGTTA GGTCGTAGTTACGAC TERM 3752 5278390 - 5278434 + T 80 -14.4 -3.11687 | opp_overlap 5278387, overlap 5278363 5278429 TCGTGAAAACAATCT CGG-GATTCCGGGTTCGCTCAC TGC GTGAGCGC-CCCGGAATGACCG TTAGGTCGTAGTTAC Rpal_4908 5279984 - 5278446 - | AMP-dependent synthetase and ligase TERM 3753 5278568 - 5278585 + g 72 -6.9 -4.27316 | overlap 5278536 5278527 GCTGGGTCTTGCCGA CCTGGCC GTTT GTCCAGG TTTTCAGTTCGGCCG Rpal_4909 5280996 - 5280331 - | transcriptional regulator, Crp/Fnr family Rpal_4910 5281588 - 5281175 - | hypothetical protein Rpal_4911 5281729 - 5282577 + | beta-lactamase domain protein Rpal_4912 5282687 - 5283529 + | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase TERM 3754 5283549 - 5283600 + F 83 -17.4 -2.52543 | gap 1 CTGATACACGCCTCT CCTTC-GTCATTCCGGGATGCGCAC TTC GTTCGCGCCCCGGAATGACAGAAGA TAGATTGACCAGGCT Rpal_4913 5283648 - 5284265 + | Glutathione S-transferase domain Rpal_4914 5284835 - 5284284 - | methylated-DNA/protein-cysteine methyltransferase Rpal_4915 5285427 - 5284879 - | hypothetical protein TERM 3755 5285356 - 5285376 + g 79 -11.1 -3.93256 | ACCGGCGAGATGGCG CGCGATAGC GAT GCAATCGCG TTCTTTGCCGCTCTG Rpal_4916 5286684 - 5285539 - | PepSY-associated TM helix domain protein Rpal_4917 5289025 - 5286689 - | TonB-dependent siderophore receptor TERM 3756 5289156 - 5289181 + r 80 -14.7 -3.14132 | opp_overlap 5289156 GGCCACCACGGCAAA CGCCGCCTCTC AATC GAAAGGCGGCG TTGCTGGAAAGACCG TERM 3757 5289181 - 5289156 - R 100 -16.9 -3.62096 | opp_overlap 5289156 GGCCACCACGGCAAA CGCCGCCTCTC AATC GAAAGGCGGCG TTGCTGGAAAGACCG Rpal_4918 5289795 - 5289211 - | hypothetical protein TERM 3758 5289988 - 5290023 + H 100 -20.6 -3.53444 | opp_overlap 5289993, overlap 5289993 GTGTAGGCCGAAAAC AAAAACACGCCGCCTC TTGT GAGGCGGCGTGTTTTG TTTGAGCGGACATCG TERM 3759 5289993 - 5290018 + H 100 -20.5 -4.86731 | opp_overlap 5289993, overlap 5289988 GGCCGAAAACAAAAA CACGCCGCCTC TTGT GAGGCGGCGTG TTTTGTTTGAGCGGA TERM 3760 5290018 - 5289993 - H 100 -20.5 -5.45802 | opp_overlap 5289993 5289988 GGCCGAAAACAAAAA CACGCCGCCTC TTGT GAGGCGGCGTG TTTTGTTTGAGCGGA TERM 3761 5291334 - 5291347 + H 81 -4.5 -5.06816 | GTCATCTTGCGATTT CGCAG AGCC CTGTG TTTTTGTTAAACAGT TERM 3762 5292931 - 5292878 - H 93 -18.3 -3.28791 | overlap 5292885 5292891 ACCTTCTCTTGATAA CCGGAAATCCAAACCCTCACGTCTC TTTC GAAACGCAAGGCCTTGGAGTTCCGG CTATCGAAGGTGGGT TERM 3763 5292924 - 5292885 - H 76 -10.8 -3.69354 | overlap 5292878 5292891 CTTGATAACCGGAAA TCCAAACCCTCACGTCTC TTTC GAAACGCAAGGCCTTGGA GTTCCGGCTATCGAA TERM 3764 5293399 - 5293367 - H 95 -10.6 -4.40804 | overlap 5293368 5293369 CACGATGTCAGAAAA CCCGCCAGGCTG-CGC GTT GCGCCAGCC-GGCGAA TACAAGTTGCGGACG TERM 3765 5293398 - 5293368 - H 70 -11.9 -3.24 | overlap 5293367 5293369 ACGATGTCAGAAAAC CCGCCAGGCTG-CGC GTT GCGCCAGCC-GGCGA ATACAAGTTGCGGAC TERM 3766 5296089 - 5296102 + H 71 -9.5 -3.75153 | opp_overlap 5296089 5296087 GGAGCCTGCAGAACA GCGGC AGTT GCCGC TTTCGATTGACGCAA Rpal_4919 5296343 - 5298373 + | Peptidase M23 Rpal_4920 5298520 - 5300148 + | NHL repeat containing protein Rpal_4921 5303065 - 5300426 - | ATP-dependent chaperone ClpB TERM 3767 5303450 - 5303429 - g 80 -9.4 -4.18018 | GTTCGCCATCGAAAA CGGGCCGA TCGGAT TCGACCCG GCCAATCCCCGCTAC Rpal_4922 5303292 - 5304080 + | MOSC domain containing protein Rpal_4923 5305030 - 5304287 - | putative exported protein of unknown function TERM 3768 5305276 - 5305287 + r 82 -3.6 -5.24129 | TACGTAGTCGGCGGC CTGC AGCG GCGG TTTTTTCTGCGCGCG Rpal_4924 5305947 - 5305252 - | methionine biosynthesis protein MetW Rpal_4925 5307149 - 5305950 - | homoserine O-acetyltransferase TERM 3769 5307253 - 5307227 - H 100 -14.5 -5.07486 | gap 1, opp_overlap 5307246 5307247, overlap 5307210 CAGGGCGAATAAAAA CCCGGCCTGAAC ATTG GTTC-GGCCGGG ATCGAAACTGTCCCC Rpal_4926 5307505 - 5308350 + | Chorismate mutase TERM 3770 5309016 - 5308986 - g 70 -10.5 -3.7282 | gap 1, opp_overlap 5308995 CTACGTGATGAAGAA CGACTACGAGCTCG GCAT CGAGCTGGT-GTCG ACCACCGAGAACACC TERM 3771 5309501 - 5309463 - g 75 -9 -4.07568 | opp_overlap 5309463 5309464 5309464, overlap 5309464 5309492 GCTGGTGCTGGAAAA CTTGCGC-GAGTTCATGG GACAG CCATGAACTCTGCGCC-G ATGTTTCGCAAAGTC Rpal_4927 5308393 - 5309490 + | histidinol-phosphate aminotransferase Rpal_4928 5309487 - 5310428 + | Prephenate dehydrogenase Rpal_4929 5310881 - 5311159 + | protein of unknown function DUF497 TERM 3772 5311284 - 5311259 - gT 76 -13.9 -3.18681 | overlap 5311275 5311276 CGGCAAGCTCATCAA GCGCGGCCGCC CGAA AGCGGCGGCGC CGAAGCAACTGGTAT Rpal_4930 5311113 - 5311424 + | hypothetical protein Rpal_4931 5312483 - 5311503 - | Mg2 transporter protein CorA family protein Rpal_4932 5312830 - 5313513 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3773 5313566 - 5313549 - T 93 -14.1 -4.10657 | opp_overlap 5313549 CCAGAGTTTCGAAAA GCGCCGG TTCG CCGGCGC TTTTTTTATTGGGCG TERM 3774 5313549 - 5313566 + T 100 -14.1 -5.7946 | opp_overlap 5313549 CCAGAGTTTCGAAAA GCGCCGG TTCG CCGGCGC TTTTTTTATTGGGCG Rpal_4933 5314924 - 5313845 - | Extensin family protein Rpal_4934 5315045 - 5316673 + | AMP-dependent synthetase and ligase TERM 3775 5316831 - 5316860 + F 91 -16.5 -3.66288 | opp_overlap 5316829 CTCCCCGAGGACAGC GCAACCTCTCCCG CTTG CGGGAGAGGTTAC TTATCTTCCAAACTA TERM 3776 5316894 - 5316946 + F 93 -19.7 -3.06796 | AAGTGACTACTCGAC CGCAGCGTCCCAACCTCTCCCCGCT CTT GGCGGGGAGAGGTCGGATCGCATCG TTAGATGCGATCCGG Rpal_4935 5316977 - 5317345 + | protein of unknown function DUF559 TERM 3777 5317378 - 5317427 + F 86 -16.4 -3.1505 | gap 1 GGCTGTGCCCAGCCC CTCACCCCAC-CCCTCTCCCCGC CAAGA GCGGGGAGAGGGCGCGCGCTGGG TTCGTGACAACTACT Rpal_4936 5317639 - 5318484 + | hypothetical protein Rpal_4937 5318864 - 5318565 - | hypothetical protein Rpal_4938 5319386 - 5318943 - | hypothetical protein Rpal_4939 5319802 - 5319383 - | hypothetical protein Rpal_4940 5320548 - 5319799 - | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 3778 5320605 - 5320641 + H 71 -11.4 -3.53012 | gap 1, opp_overlap 5320586 5320584 CAGCCGGGGTACACC CCGACGCC-GCGCCAGC CGCC GCGGACGCAGGCGACGG TTTCGACCGGCAGCG TERM 3779 5321240 - 5321215 - H 80 -14.7 -3.23492 | overlap 5321213 GACGACAGAGCAAGA CACAGGGCGCG ACAA CGCGGCCTGTG AGTACCCATCGGAAA TERM 3780 5321521 - 5321505 - g 72 -15.1 -2.79209 | overlap 5321464 5321502 5321500 CAAGGACGAATACGA CGCCGCG CAG CGCGGCG AGATCAGCACTGACG Rpal_4941 5321317 - 5323008 + | methyl-accepting chemotaxis sensory transducer TERM 3781 5323030 - 5323056 + F 100 -22.3 -3.84451 | CAGACCCCATTGTCG CGGCCGGCGCC CCCCA GGCGCCGGCCG TTTGCATTTCAGGGC Rpal_4942 5323217 - 5324812 + | hypothetical protein Rpal_4943 5324802 - 5326037 + | hypothetical protein TERM 3782 5326404 - 5326362 - g 70 -11.3 -3.53444 | gap 1 GGATGCTGGCCGAAA TGCTGGCGGCCGGCCTCAAT GCCA ATTGCGGC-GGCCGCGATCA CATCGGCATCGAGGT Rpal_4944 5326034 - 5327494 + | Pyridoxal-dependent decarboxylase TERM 3783 5327740 - 5327707 - T 71 -12.5 -2.96984 | gap 1, opp_overlap 5327707 GAAAGGCAGTAGAGA TTCCGGATTCGCTCAC TGC GTGAGCGC-CCCGGAA TGACTTCGGAAAAGG Rpal_4945 5328600 - 5327773 - | metallophosphoesterase Rpal_4946 5329195 - 5328602 - | 5-formyltetrahydrofolate cyclo-ligase TERM 3784 5329370 - 5329347 - H 75 -14.6 -2.78596 | TAGGTGGGCACCATA TGACCGGGTC CACG GACCCGGCCA GGGACAGTTCCCGAA Rpal_4947 5329550 - 5330068 + | hypothetical protein Rpal_4948 5330261 - 5330082 - | hypothetical protein Rpal_4949 5330342 - 5330881 + | valyl-tRNA synthetase TERM 3785 5330910 - 5330957 + T 75 -14.2 -2.75992 | gap 1, opp_overlap 5330919 5330923, overlap 5330908 5330923 TAGTTCGACGTCATT GCGAGCGAAGCAATCCAGCATCT CGC ACGCGCTGGATTGCTCCGC-CGC TGATATTACATGCCG Rpal_4950 5331352 - 5330963 - | Rhodanese domain protein Rpal_4951 5331852 - 5331376 - | Isoprenylcysteine carboxyl methyltransferase Rpal_4952 5333169 - 5331877 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3786 5332308 - 5332256 - G 82 -11.9 -4.05033 | gap 1, opp_overlap 5332276 TCCACCGGACAGAAA CCGCTG-GCATCGGCAAGCCCGGC GGCGCG GCCGAGCTTGCCGGCAATCTGCGG CGGGATGACGTTGAC Rpal_4953 5334474 - 5333209 - | Flavocytochrome c sulphide dehydrogenase flavin-binding Rpal_4954 5334921 - 5334502 - | Cytochrome c553-like protein Rpal_4955 5336073 - 5334961 - | protein of unknown function DUF395 YeeE/YedE Rpal_4956 5337040 - 5336285 - | putative sulfite oxidase cytochrome subunit (SoxD) TERM 3787 5336877 - 5336914 + g 90 -15.5 -3.81027 | gap 1, overlap 5336881 CCGAGCTTCACCGGC GCGGGCGGCGCAGCCGGC ACG GCAGGCTGCGCCGGT-GC TTTGGCTTCCTTCAC TERM 3788 5336881 - 5336911 + g 86 -18.2 -2.98436 | overlap 5336877 GCTTCACCGGCGCGG GCGGCGCAGCCGGC ACG GCAGGCTGCGCCGG TGCTTTGGCTTCCTT Rpal_4957 5338319 - 5337024 - | oxidoreductase molybdopterin binding Rpal_4958 5340086 - 5338389 - | 5'-Nucleotidase domain protein TERM 3789 5339253 - 5339297 + g 77 -10 -3.95787 | opp_overlap 5339255 GCCGTTGTGCGACAG CAGCACCACGATCGCG-GCGCC CTC GGCGCGCGC-ATCGTCGACCTG TTTCTGCATGTCCTC TERM 3790 5340166 - 5340188 + r 91 -20.6 -2.62263 | overlap 5340147 CCGCAGATCCTCGTT CCGGGAGCCG ATC CGGCTCCCGG TGGTCTACGGCGGAT Rpal_4959 5340558 - 5340229 - | Sulphur oxidation protein SoxZ Rpal_4960 5341061 - 5340597 - | hypothetical protein Rpal_4961 5341248 - 5342069 + | hypothetical protein Rpal_4962 5342083 - 5342826 + | hypothetical protein TERM 3791 5343347 - 5343310 - g 74 -9.8 -3.84648 | overlap 5343305 GCCAACATGACCAAA CCGGGCATGCCGCA ATCCGGCCTG CGCGACCTGCCCGG CGTCGTCGTGCTCGG Rpal_4963 5342998 - 5343495 + | protein of unknown function DUF336 TERM 3792 5343761 - 5343732 - T 74 -14.3 -2.61106 | gap 1, overlap 5343728 5343729 CATATTCACAATGGA TTCC-GGGCTCGCG CTT CGCGCGCCCCGGAA TGACGAGTTGCTACA Rpal_4964 5344365 - 5343772 - | putative thioredoxin Rpal_4965 5345137 - 5344394 - | cytochrome c biogenesis protein transmembrane region Rpal_4966 5345178 - 5345582 + | hypothetical protein Rpal_4967 5345621 - 5345995 + | transcriptional regulator, ArsR family TERM 3793 5346118 - 5346133 + GT 76 -8.2 -4.2461 | overlap 5346119 TGGCCGGCCTGTGCG TCGGCG TCAC CGCCGG TTTCTTCGTGCGGCT TERM 3794 5346965 - 5346943 - gT 77 -11.2 -3.80841 | ACGACGACCATGAAA TGCGCCGTCA CGT CGCCGGCGCA GCGCTGATGGGGTTC Rpal_4969 5347641 - 5347189 - | Domain of unknown function DUF1791 Rpal_4968 5346072 - 5347274 + | protein of unknown function DUF395 YeeE/YedE TERM 3795 5347763 - 5347804 + Tr 77 -13.7 -3.28924 | gap 1, opp_overlap 5347750 5347755, overlap 5347765 5347767 5347786 GAGATGACTTGGGTC GTCATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATCTC TTGTCAAGCAACCTC TERM 3796 5347765 - 5347802 + Tr 80 -14.9 -3.21276 | gap 1, opp_overlap 5347755, overlap 5347763 5347767 5347786 GATGACTTGGGTCGT CATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATC TCTTGTCAAGCAACC TERM 3797 5347767 - 5347800 + Tr 89 -17.5 -3.17146 | gap 1, opp_overlap 5347755, overlap 5347765 5347763 5347786 TGACTTGGGTCGTCA TTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAA TCTCTTGTCAAGCAA TERM 3798 5347786 - 5347838 + Tr 95 -17.8 -3.53012 | opp_overlap 5347755 5347816 5347817, overlap 5347767 5347765 5347763 GGGGCGCGAGCGCAG CTCGCGAACCCGGAATCTCTTG TCAAGCAAC CTCGAGATTCCGGGTTCGCGCG TTTCACGCGCGCCCC Rpal_4970 5348928 - 5347873 - | protein of unknown function DUF395 YeeE/YedE TERM 3799 5349184 - 5349133 - R 78 -12 -3.72576 | gap 1, opp_overlap 5349160 5349181, overlap 5349134 GGCCTCTCGATCAAA GCGTCCCGACGGCCGGCGCCGCCAC GAT GCGCCAGCGCAGGCCG-CGGCCGGC GAATTCATCGCCGAT TERM 3800 5349182 - 5349134 - R 70 -13 -2.83403 | gap 2, opp_overlap 5349160 5349181, overlap 5349133 GCCTCTCGATCAAAG CGTCCCGACGGCCGGCGCCGCCAC GAT GCGCCAGCGCAGGCCG-CG-GCCG GCGAATTCATCGCCG Rpal_4971 5349433 - 5349128 - | hypothetical protein Rpal_4972 5352525 - 5349430 - | heavy metal efflux pump, CzcA family TERM 3801 5351442 - 5351405 - G 71 -9.2 -3.80573 | gap 2, overlap 5351406 CGCATCAGCACGAAA GTGGCGAGCGCCGACAGC GGCA GC-GTCAACGC-CACCAC AAGCGCGGCGCGCCA TERM 3802 5352347 - 5352369 + g 71 -9 -3.81689 | overlap 5352348 ACCCGGGTCTCGACC TCCTCGGGCG TCA TGCCCGGGGC TTTCATGATGATCTT Rpal_4973 5353632 - 5352526 - | efflux transporter, RND family, MFP subunit TERM 3803 5353027 - 5353043 + g 72 -11.5 -3.53012 | opp_overlap 5353002 CGCCTCGACGGTCTG GCCCGGC GTG GTCGGGC TTTCCAGCACCACGC Rpal_4974 5355150 - 5353828 - | methyl-accepting chemotaxis sensory transducer TERM 3804 5354280 - 5354254 - GR 75 -12.3 -3.62096 | opp_overlap 5354237 GGCGACCACCGCAAA GC-CGCGACCGGC CTC GCCGG-CGCGCGC CGCTTCGATCGTGGC Rpal_4975 5355649 - 5355113 - | putative PAS/PAC sensor protein TERM 3805 5355783 - 5355813 + r 71 -12.5 -3.05463 | opp_overlap 5355777 TCAATGGAACCCGGC GCATGGCCGACGA TCAGT TCGCCGGCCACGC TTAGCTCACGCGGCT Rpal_4976 5357141 - 5355819 - | methyl-accepting chemotaxis sensory transducer Rpal_4977 5357637 - 5357104 - | putative PAS/PAC sensor protein TERM 3806 5357534 - 5357559 + gr 71 -8.9 -3.8594 | opp_overlap 5357533 5357535, overlap 5357535 GCGACATCGCAGAAC AGGCGGTTGGC GTAA GTCAGCCGCCC TTTGGTGTCGGTCTT Rpal_4978 5358863 - 5357814 - | A/G-specific adenine glycosylase TERM 3807 5358169 - 5358187 + g 70 -11.6 -3.38991 | opp_overlap 5358162 5358163, overlap 5358167 ACCACGAAGGCGGCA CCGCGGCG CAG CGCCCCGG TCTTCTTCGGCGCCT Rpal_4979 5358970 - 5359449 + | protein of unknown function DUF1159 Rpal_4980 5359592 - 5360266 + | DSBA oxidoreductase Rpal_4981 5360576 - 5360809 + | hypothetical protein Rpal_4982 5360806 - 5361021 + | hypothetical protein TERM 3808 5361553 - 5361526 - f 81 -15.6 -3.05816 | opp_overlap 5361527 TCAGCCGCTACCGAA CTCATCGGCCGG TCTC CCGGCCGATGAT CTGTCCCGCTTCCAA TERM 3809 5361527 - 5361552 + F 91 -19.1 -2.89742 | opp_overlap 5361526 CAGCCGCTACCGAAC TCATCGGCCGG TCTC CCGGCCGATGA TCTGTCCCGCTTCCA TERM 3810 5363734 - 5363705 - g 100 -13.5 -4.73388 | overlap 5363707 AAGGGCTATGAAAAA GCGATCGGCGCCG TGCT CGGCGACGATCTC GACGCGCCGGTCGAT TERM 3811 5363732 - 5363707 - g 71 -14.7 -2.65504 | overlap 5363705 GGGCTATGAAAAAGC GATCGGCGCCG TGCT CGGCGACGATC TCGACGCGCCGGTCG TERM 3812 5364971 - 5364941 - g 74 -10.3 -3.87373 | gap 1 GAGAGCCTGGACAAA CTGCGCCGCGACCG CGAG CGG-CTCGGCGCCG TCAACCTGCGCGCCG Rpal_4983 5362130 - 5365594 + | chromosome segregation protein SMC TERM 3813 5365611 - 5365585 - f 74 -12.2 -3.4072 | TATTCTGGATCAGAA CGTGGCGTGAGC GGC GCTCGCGCCAAG GCAGTGACGCGGCGC TERM 3814 5366781 - 5366733 - g 70 -10.8 -3.58343 | gap 1 GCGATCACCGCCAAA CTCTGCACGCCG-GCCGGCAAGC TTGA GCTCGCCGTCGCCGCGCGCCGCG ACAAGCCGGCCTATG Rpal_4984 5365869 - 5366837 + | Ribosomal small subunit Rsm22 Rpal_4985 5366953 - 5367504 + | LemA family protein TERM 3815 5368786 - 5368729 - g 100 -21.9 -3.60098 | gap 1 ACGGTCGATGGTAAA GCGCCAGCCTCCGACGCGCCGCCGCACG GGC CGTGGAGCGACGCGGCGGCA-CCGGCGC CCAAGCCGTCGCTGC Rpal_4986 5367640 - 5368830 + | peptidase M48 Ste24p Rpal_4987 5369011 - 5369784 + | hypothetical protein TERM 3816 5369843 - 5369802 - f 89 -17.4 -3.14931 | opp_overlap 5369805 CGCATTGCTGAGGAA TCCGGCTATATCGGACGG CCTCCC CCGACCGATATAGCCTGA TGTCGCGCACTCCGG TERM 3817 5369805 - 5369840 + F 86 -17.7 -2.62396 | opp_overlap 5369802 ATTGCTGAGGAATCC GGCTATATCGGACGG CCTCCC CCGACCGATATAGCC TGATGTCGCGCACTC Rpal_4988 5369843 - 5370508 + | hypothetical protein Rpal_4989 5370706 - 5371668 + | transposase IS4 family protein Rpal_4990 5372481 - 5371936 - | adenine phosphoribosyltransferase Rpal_4991 5374791 - 5372632 - | anthranilate synthase TERM 3818 5374860 - 5374843 - H 81 -9.8 -4.16785 | overlap 5374822 ACAGGACAAACGAAA GCCGCC TCGCGT GGCGGC CTCAGGACGATCGGA Rpal_4992 5375882 - 5376058 + | hypothetical protein Rpal_4993 5376313 - 5376095 - | PhnA protein TERM 3819 5376425 - 5376398 - R 100 -20.6 -4.56914 | opp_overlap 5376396 GCATCCAAATGAAAA GCGCGAGGCGGA TCGC TCCGCCCCGCGC CGTGTCTTGAAGCCA TERM 3820 5376477 - 5376445 - R 75 -4 -4.74103 | overlap 5376447 TCTTGAAGCCAAAAA GCTCAGAACCGGTA GGTGA TGCCGGTGCCGATC AGCCACGGATCGAGA Rpal_4994 5377136 - 5376447 - | OmpW family protein Rpal_4995 5377629 - 5377369 - | hypothetical protein TERM 3821 5377654 - 5377687 + r 72 -13.9 -2.78384 | gap 1, opp_overlap 5377647 5377676 5377681 CCAGAGCACGAGTCA TTCCGGG-GCGCTCGC GAA GCGAGTGAACCCGGAA TCTCGTAGCGACAAC TERM 3822 5377721 - 5377676 - R 83 -16.9 -2.52464 | opp_overlap 5377654 5377710, overlap 5377647 5377681 5377702 5377705 GCGCTCGCGAAGCGA GTGAACCCGGAATCTCGTAGC GACA ACGACGGGATTCCGGGTTCGC GCGTTGCACGCGCGC TERM 3823 5377716 - 5377681 - R 75 -14 -3.09933 | opp_overlap 5377654 5377710, overlap 5377647 5377676 5377702 5377705 CGCGAAGCGAGTGAA CCCGGAATCTCGTAGC GACA ACGACGGGATTCCGGG TTCGCGCGTTGCACG TERM 3824 5377751 - 5377702 - R 84 -15.7 -3.35798 | gap 1, opp_overlap 5377710 5377735, overlap 5377681 5377676 5377705 ATCTCGTAGCGACAA CGACGGGATTCCGGGTTCGCGCGT TGC ACGCGCGC-CCCGGAATTACGTTG CGAGGCTTTGTCTAA TERM 3825 5377748 - 5377705 - R 83 -16 -2.8474 | gap 1, opp_overlap 5377710 5377735, overlap 5377681 5377676 5377702 TCGTAGCGACAACGA CGGGATTCCGGGTTCGCGCGT TGC ACGCGCGC-CCCGGAATTACG TTGCGAGGCTTTGTC TERM 3826 5377710 - 5377743 + r 89 -17.5 -3.17194 | gap 1, opp_overlap 5377681 5377676 5377705 5377702, overlap 5377735 GCGACAACGACGGGA TTCCGGGTTCGCGCGT TGC ACGCGCGC-CCCGGAA TTACGTTGCGAGGCT Rpal_4996 5379718 - 5377808 - | AMP-dependent synthetase and ligase TERM 3827 5379773 - 5379793 + r 79 -8.2 -4.2704 | CATGTCCGGCTTTTA GGCGCGGT ACGCA ACCCCGCC TTTGTTCCTAATCAA Rpal_4997 5380645 - 5379899 - | Tetratricopeptide TPR_2 repeat protein TERM 3828 5380812 - 5380794 - R 74 -12.4 -3.48924 | opp_overlap 5380794, overlap 5380798 TGACGTTGGAGAGAA GGAAGCGC TTC GCGCCTCC TTATCATGAGCGTCG Rpal_4998 5381634 - 5380831 - | short-chain dehydrogenase/reductase SDR Rpal_4999 5383509 - 5381734 - | Radical SAM domain protein Rpal_5000 5384019 - 5383657 - | Domain of unknown function DUF1850 Rpal_5001 5386148 - 5384028 - | TRAP transporter, 4TM/12TM fusion protein TERM 3829 5386275 - 5386246 - R 86 -8.6 -4.63218 | gap 1, opp_overlap 5386244, overlap 5386250 GTCTCCCTAAGAAAA TG-GATGGCCGGG TCGAG CCCGGCCATGACA CCTGACTTGGGGCTC TERM 3830 5386270 - 5386250 - R 74 -14 -2.84841 | opp_overlap 5386244, overlap 5386246 CCCTAAGAAAATGGA TGGCCGGG TCGAG CCCGGCCA TGACACCTGACTTGG Rpal_5002 5387242 - 5386295 - | TRAP transporter solute receptor, TAXI family TERM 3831 5387345 - 5387313 - H 70 -10.6 -3.57561 | overlap 5387282 GGTCAACCCGTCAAA TCGGCGGTCCG-GGCC GAG GGCCGCGGAAC-CCGA AGGCGGCGGCGCGAA Rpal_5003 5387398 - 5388663 + | major facilitator superfamily MFS_1 Rpal_5004 5389037 - 5388681 - | response regulator receiver protein Rpal_5005 5390051 - 5389047 - | signal transduction histidine kinase TERM 3832 5389948 - 5389923 - G 71 -3.2 -4.58283 | gap 1, overlap 5389924 GAAGGTTTCGAAAAA CGACCG-GCTG GCATT CTGCACGGTCA GGCTGGCGTCCAGTA Rpal_5006 5390273 - 5391832 + | Alkaline phosphatase Rpal_5007 5391968 - 5392975 + | hypothetical protein Rpal_5008 5393217 - 5394431 + | diguanylate phosphodiesterase Rpal_5009 5394936 - 5394448 - | putative exported protein of unknown function Rpal_5010 5395182 - 5395484 + | hypothetical protein Rpal_5011 5396714 - 5395503 - | hypothetical protein Rpal_5012 5397476 - 5396850 - | NUDIX hydrolase TERM 3833 5397437 - 5397421 - G 89 -15.1 -4.07568 | TCGTGGCGCGGAAAA GCCGCGC AGC GCGCGGC GATCAGGGCTCGGGT Rpal_5013 5397556 - 5397981 + | thioesterase superfamily protein Rpal_5014 5398743 - 5397997 - | HAD-superfamily hydrolase, subfamily IA, variant 3 Rpal_5015 5399408 - 5399019 - | response regulator receiver protein TERM 3834 5399476 - 5399460 - R 72 -2.1 -4.68908 | opp_overlap 5399467, overlap 5399462 GCGACGCAAAACAAA GACCGGC TGT GACGGTG TCAGATTGCTGCAGT Rpal_5016 5400450 - 5399701 - | hypothetical protein Rpal_5017 5401221 - 5401039 - | protein of unknown function DUF329 Rpal_5018 5401834 - 5401211 - | maf protein Rpal_5019 5403097 - 5401931 - | ATPase, RecF-like protein TERM 3835 5403336 - 5403290 - R 71 -13.7 -2.57132 | gap 1, overlap 5403253 5403289 GCCGCGCTCCACAAG CTCGGGATTCCGGGTTCGCGCC TGGC GGCGCGC-CCCGGAATGACGAA TGTGGAGGCCAGTAC Rpal_5020 5404143 - 5403676 - | protein tyrosine phosphatase Rpal_5021 5404693 - 5404202 - | hypothetical protein TERM 3836 5404531 - 5404559 + g 70 -6.6 -4.17048 | gap 1 GCAGGGTGAACGGTC CCTCGCCCGCGCC TTCG GGCGCGAAC-AGG TTCTTTTCGACCAGA Rpal_5022 5405985 - 5404690 - | Histidinol dehydrogenase TERM 3837 5405742 - 5405698 - G 71 -3.4 -4.65895 | gap 1, opp_overlap 5405708, overlap 5405700 CCGGCGATGGAAAAA TTCGATGCGGTCG-CGCGCCA GCTT CAGCGCGTCGATCGTCTCGGA ATCGCACGCCTTCAC Rpal_5023 5406564 - 5406109 - | hypothetical protein Rpal_5024 5407873 - 5406584 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase Rpal_5025 5408323 - 5408033 - | putative exported protein of unknown function TERM 3838 5408514 - 5408495 - H 72 -13.6 -2.70932 | overlap 5408499 TCCCTCCCGGAACGA CCAACGGG CCCG CCCGTTGG CCTGCATCGGTGCGA Rpal_5026 5408557 - 5408844 + | putative exported protein of unknown function TERM 3839 5408872 - 5408895 + T 100 -19.6 -5.27335 | ATCGGACTTACTCGA GAGCCCCGGC TTCA GCCGGGGCTC TTTTTGTTTCGCGGA Rpal_5027 5410605 - 5408914 - | cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3840 5409800 - 5409746 - G 70 -11.2 -3.52192 | opp_overlap 5409795 GGGAAGCCGAGATAA TTCTCAATCCGCGCGCTGGCGCCGGC CTG GCCGCCGAAAGCGCGCTGATCGCATA CCGCCACGGTGAGCC Rpal_5028 5410846 - 5410637 - | hypothetical protein TERM 3841 5411050 - 5411087 + G 81 -12.5 -3.88015 | overlap 5411052 GTCGTGCTGCACTCC CCGGTGGTGCGGTCGCC GATC GCCGGCCGCCCCGCCTG TTTGCTGGTTCTGTG TERM 3842 5411052 - 5411085 + G 78 -13.7 -3.51793 | overlap 5411050 CGTGCTGCACTCCCC GGTGGTGCGGTCGCC GATC GCCGGCCGCCCCGCC TGTTTGCTGGTTCTG Rpal_5029 5410921 - 5411367 + | protein of unknown function DUF1486 Rpal_5030 5411830 - 5412219 + | hypothetical protein TERM 3843 5412743 - 5412733 - g 79 -6.8 -4.57569 | overlap 5412734 5412736 5412737 GGAGTTTGTGAAAAA GCAG CGG CTGC TCGAGGACGAGAAGC TERM 3844 5413289 - 5413253 - g 72 -13.8 -3.05384 | GTCTGGGTCACCGAA GCGCGCTGCGCGATT-CC GGT GGCAATCGCGCTGCG-GC AGTCGCTGATCGAGC Rpal_5031 5412344 - 5413633 + | hypothetical protein Rpal_5032 5414911 - 5413670 - | putative 4-hydroxybutyrate CoA transferase Rpal_5033 5416104 - 5414938 - | acyl-CoA dehydrogenase domain protein Rpal_5034 5417446 - 5416157 - | TRAP dicarboxylate transporter, DctM subunit TERM 3845 5416848 - 5416809 - G 74 -9.8 -3.81287 | gap 1, overlap 5416801 CACAGCAGCACGAAA CGCTCGCGCCACGGCACCG ACG CGAC-CCGAGGCGCGCGTG ACGGATCGAGCCAGA Rpal_5035 5418009 - 5417458 - | Tripartite ATP-independent periplasmic transporter DctQ component TERM 3846 5417915 - 5417881 - G 83 -15.9 -3.51825 | gap 2 GTAGGTGAAGGAGAA CGGACG-GTTCA-GCGC GTA GCGCATGAACACGTCCG CCACGACCAGCACCA Rpal_5036 5419068 - 5418043 - | TRAP dicarboxylate transporter- DctP subunit TERM 3847 5419110 - 5419123 + H 71 -9.5 -3.72893 | overlap 5419079 5419078 AGCAGCGGGTGGAAC GCGGC TTGT GCCGC TTTGATGGAGGGATC Rpal_5037 5419272 - 5420468 + | L-carnitine dehydratase/bile acid-inducible protein F Rpal_5038 5420512 - 5420964 + | MaoC domain protein dehydratase TERM 3848 5421032 - 5421014 - g 70 -11.6 -3.39668 | GCGCAAATTCGAGAA GGCGTCGC AAG GCGGCGCC GACGCACTGATCATC Rpal_5039 5420964 - 5421812 + | Citryl-CoA lyase TERM 3849 5422378 - 5422344 - g 71 -9.3 -3.76048 | gap 1, overlap 5422349 GTTCAAGCAATACAA CCAC-ACCACCCCGAT CAGC ATCGAGGCGGTCGAGG CCGAGCTGCGCAAGT Rpal_5040 5421853 - 5422584 + | transcriptional regulator, IclR family Rpal_5041 5423753 - 5422710 - | IMP dehydrogenase/GMP reductase TERM 3850 5422805 - 5422828 + g 70 -10.3 -3.64716 | gap 1, opp_overlap 5422800, overlap 5422803 CGCCGATATAGGTCA TCGCCGAGCG CAGGC CGC-CGGCGA TCTTTTCGACCGTGG Rpal_5042 5423841 - 5424746 + | 2-dehydropantoate 2-reductase Rpal_5043 5425497 - 5424748 - | nuclease (SNase domain protein) Rpal_5044 5425625 - 5426539 + | thioesterase superfamily protein Rpal_5045 5426717 - 5427919 + | diguanylate cyclase Rpal_5046 5429116 - 5427920 - | acetate kinase Rpal_5047 5430528 - 5429113 - | Phosphate butyryltransferase Rpal_5048 5431313 - 5430552 - | short-chain dehydrogenase/reductase SDR Rpal_5049 5432265 - 5431396 - | protein of unknown function DUF344 TERM 3851 5432306 - 5432320 + H 71 -12.8 -3.09492 | opp_overlap 5432291 CGGGCTCCGGCCGGC CCGCCG CCC CGGCGG TCTTCCCGTTCAGGG TERM 3852 5432702 - 5432718 + G 81 -11.5 -3.96624 | opp_overlap 5432700 CGCGCCGGAGCAACG CGGCGCG GAT CGCGCTG TTTGTACTGCCACTG Rpal_5050 5432647 - 5434029 + | putative membrane protein of unknown function TERM 3853 5434083 - 5434060 - T 100 -19.6 -4.71426 | opp_overlap 5434060 TCGCTACGAACAAAA GCCGCGCGGA GCGA TCCGCGCGGC TTTGTCGTTTCAGAT TERM 3854 5434060 - 5434083 + T 100 -19.6 -4.14056 | opp_overlap 5434060 TCGCTACGAACAAAA GCCGCGCGGA GCGA TCCGCGCGGC TTTGTCGTTTCAGAT Rpal_5051 5434513 - 5434109 - | hypothetical protein TERM 3855 5434716 - 5434683 - R 85 -15.4 -3.53224 | gap 1, opp_overlap 5434694, overlap 5434687 5434690 GATGCCCCTCTCAAA CGAACAAGGGACGGC GCGAA GCCGTCCCTTGC-CG GAACTCACCGGATGG TERM 3856 5434713 - 5434687 - R 95 -18.1 -3.51232 | opp_overlap 5434694, overlap 5434683 5434690 CCCCTCTCAAACGAA CAAGGGACGGC GCGAA GCCGTCCCTTG CCGGAACTCACCGGA TERM 3857 5434710 - 5434690 - R 86 -14 -3.89354 | opp_overlap 5434694, overlap 5434687 5434683 CTCTCAAACGAACAA GGGACGGC GCGAA GCCGTCCC TTGCCGGAACTCACC Rpal_5052 5436306 - 5434744 - | protease Do TERM 3858 5435690 - 5435663 - G 72 -13.4 -3.10343 | ACAGCGATCACCCAA TCGCCGACCCGC GCCG GCGCATCGGCGA AGTTGACGTGCGGAA TERM 3859 5436099 - 5436118 + g 75 -9.2 -4.08216 | opp_overlap 5436089 CCAGATCGCCGAACC CGGCGGGC GCCG GCTTGCCG TTTTCAGCCGCATAG Rpal_5053 5437055 - 5436567 - | hypothetical protein Rpal_5054 5437448 - 5437164 - | hypothetical protein TERM 3860 5438639 - 5438613 - g 72 -13.6 -3.14463 | opp_overlap 5438616, overlap 5438616 AAGCCTCTCGATCAA CCAGCGGCGCCG GCT CGGCGCCGCTTT CGTGCCAGAACAACG TERM 3861 5438616 - 5438636 + G 100 -19.7 -3.72576 | opp_overlap 5438613 5438616 CCTCTCGATCAACCA GCGGCGCCG GCT CGGCGCCGC TTTCGTGCCAGAACA TERM 3862 5438636 - 5438616 - g 93 -19.7 -2.77899 | opp_overlap 5438616, overlap 5438613 CCTCTCGATCAACCA GCGGCGCCG GCT CGGCGCCGC TTTCGTGCCAGAACA Rpal_5055 5437606 - 5439171 + | ABC transporter related TERM 3863 5439851 - 5439865 + G 74 -12.8 -3.5774 | GTGGTCGGCACCGCC CCGCGC GCG GCGCGG TTTGCCGGCTTCAAT Rpal_5056 5439155 - 5440246 + | inner-membrane translocator TERM 3864 5441097 - 5441132 + G 72 -13.2 -3.14132 | gap 1 TCGCGCGTCCGCCGG GGCGGGTCGGTGGCGCC GGC GGCGCT-CGGAACCGCC TTCGTGCCGGAGCGC Rpal_5057 5440233 - 5441150 + | inner-membrane translocator TERM 3865 5442184 - 5442150 - g 70 -6.3 -4.18934 | gap 1, opp_overlap 5442182, overlap 5442151 GACGACGTGAAGAAA CTCGCCGCCGACACCG AGGC CGGCATCGCCGCCG-G CACCATCAAGCCGTT Rpal_5058 5441232 - 5442329 + | basic membrane lipoprotein Rpal_5059 5443490 - 5442525 - | PDZ/DHR/GLGF domain protein Rpal_5060 5444605 - 5443610 - | hypothetical protein TERM 3866 5445170 - 5445184 + G 71 -3.4 -4.64676 | overlap 5445171 5445172 TGACCTCGTGGTACA TGGCGG TGA CCGCGG TTTTCTTCGCGATGG TERM 3867 5445344 - 5445381 + G 78 -10 -4.1043 | gap 2, opp_overlap 5445361, overlap 5445343 5445361 CCTATGTCGGGCGGG CGCG-CG-GCACGTTC AAAGATCC GAACGTGCTCGGCGCG TTTCTGATCTTTCCG Rpal_5061 5444863 - 5446119 + | hypothetical protein TERM 3868 5447015 - 5446995 - g 81 -16.1 -3.20435 | CGAAGTACGGATCAA GGGCCGCCG CGC CGGCGACCC TGCGGCGCTGATCGC Rpal_5062 5446150 - 5447133 + | UDP-glucose 4-epimerase TERM 3869 5447430 - 5447444 + G 72 -7.1 -4.29845 | CGGCGCAAGTCGGAC CGCAG GAAAG CTGCG TTTTGGATTCCGTTC TERM 3870 5447992 - 5447977 - g 70 -10.4 -3.73953 | ACGAGGCCGAGGAAA TCGCGG TGTG CCGCGA AATCGGCGCCCTGGC Rpal_5063 5447361 - 5448278 + | glycosyl transferase, WecB/TagA/CpsF family Rpal_5064 5449430 - 5448294 - | glycoside hydrolase family 5 Rpal_5065 5451602 - 5449446 - | lipopolysaccharide biosynthesis protein Rpal_5066 5451978 - 5453105 + | glycosyl transferase group 1 Rpal_5067 5453127 - 5454656 + | hypothetical protein Rpal_5068 5455039 - 5454674 - | hypothetical protein TERM 3871 5455616 - 5455640 + G 75 -9.2 -4.03888 | overlap 5455628 GCTCGCCTGCTTTGC CGGCAGCGTG CTGGT CGGGCTGCCG TTCTTCTTCTGGGTA Rpal_5069 5455182 - 5456651 + | Membrane protein involved in the export of O-antigen and teichoic acid-like protein Rpal_5070 5457721 - 5456720 - | Homoserine O-succinyltransferase Rpal_5071 5459038 - 5457734 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 3872 5460900 - 5460929 + G 74 -7.7 -4.1822 | overlap 5460897 CATCGCCATCTCGCC GAGCGGCTGCCGG CTTA CTCACGGCCGCTC TTTCTTCGGCTCCGG TERM 3873 5460983 - 5461032 + G 81 -10.8 -4.03234 | gap 2, opp_overlap 5460988 GTTCAAGCAGGCCAA GCAGA-CGCTGATCACCGA-GGGT TTTG ACCCGTCGGTCGTCGGCGATCCGC TTTATGTCGCCGACA Rpal_5072 5459304 - 5461121 + | AMP-dependent synthetase and ligase Rpal_5073 5461136 - 5462059 + | aminotransferase class IV Rpal_5074 5462909 - 5462025 - | hypothetical protein Rpal_5075 5463010 - 5463255 + | conserved hypothetical protein; putative acyl carrier domain TERM 3874 5463362 - 5463388 + G 73 -13.7 -3.12482 | overlap 5463361 5463352 CGTGGGACCTGTTTC GCCGGCAAGCT GCCTG AGCTCGCCGGC TGTTCAGTGCTGTTG Rpal_5076 5463242 - 5464621 + | AMP-dependent synthetase and ligase Rpal_5077 5464614 - 5465345 + | short-chain dehydrogenase/reductase SDR Rpal_5078 5466520 - 5465579 - | tRNA synthetase class II (G H P and S) Rpal_5079 5467784 - 5466555 - | Acyl-CoA dehydrogenase type 2 domain Rpal_5080 5468151 - 5468423 + | hypothetical protein Rpal_5081 5468497 - 5468952 + | protein of unknown function DUF861 cupin_3 TERM 3875 5469024 - 5468990 - f 71 -8.4 -3.87869 | opp_overlap 5468995, overlap 5468995 GCAAGGCCGCACAAA TCAGACGGCGGATCGC GCG GCGGTCCGCCGTTTTC GTTCGCCAGCCCTAC TERM 3876 5469019 - 5468995 - f 88 -17.1 -3.05997 | opp_overlap 5468995, overlap 5468990 GCCGCACAAATCAGA CGGCGGATCGC GCG GCGGTCCGCCG TTTTCGTTCGCCAGC TERM 3877 5468995 - 5469019 + F 100 -19.3 -4.4078 | opp_overlap 5468995 5468990 GCCGCACAAATCAGA CGGCGGATCGC GCG GCGGTCCGCCG TTTTCGTTCGCCAGC Rpal_5082 5469129 - 5469716 + | 3-dehydroquinate dehydratase TERM 3878 5469879 - 5469848 - T 70 -7.8 -4.00532 | overlap 5469850 CTGCGAAAGATCAAA GACGTGGATGGCCC GGTC GAGCCGGCCACGAC AAGTGGAGAAGGGAT TERM 3879 5469976 - 5469943 - T 83 -13.2 -3.85698 | gap 1, opp_overlap 5469943 5469946 5469949 CCCTCGTCTTAGAAA CGC-CAATGCCCGGG ACAAG CCCGGGCATTGTGTG TTGTGTCATGAAGCA TERM 3880 5469943 - 5469976 + T 86 -15.4 -3.54475 | gap 1, opp_overlap 5469943, overlap 5469946 5469949 CCCTCGTCTTAGAAA CGC-CAATGCCCGGG ACAAG CCCGGGCATTGTGTG TTGTGTCATGAAGCA TERM 3881 5469946 - 5469972 + T 91 -18.1 -3.24076 | opp_overlap 5469943, overlap 5469943 5469949 TCGTCTTAGAAACGC CAATGCCCGGG ACAAG CCCGGGCATTG TGTGTTGTGTCATGA TERM 3882 5469949 - 5469969 + T 84 -14 -3.74975 | opp_overlap 5469943, overlap 5469946 5469943 TCTTAGAAACGCCAA TGCCCGGG ACAAG CCCGGGCA TTGTGTGTTGTGTCA Rpal_5083 5470365 - 5470069 - | putative ferredoxin protein, FixX Rpal_5084 5471706 - 5470399 - | Electron-transferring-flavoprotein dehydrogenase Rpal_5085 5472825 - 5471719 - | Electron transfer flavoprotein alpha/beta-subunit Rpal_5086 5473695 - 5472850 - | Electron transfer flavoprotein alpha/beta-subunit TERM 3883 5473967 - 5473951 - R 95 -10.1 -4.40358 | ATGGATGTGAGAAAA TGCGGCG GCC CACCGCA GCAAAACGGCCCGCC TERM 3884 5473999 - 5473974 - R 100 -19.7 -4.26903 | CCCACCGCAGCAAAA CGGCCCGCCGC GAAC GCGACGGGCCG TCGATAGCAGGGCGC Rpal_5087 5474378 - 5474028 - | nitrogen fixation protein NifW TERM 3885 5474194 - 5474173 - G 73 -12.9 -3.2963 | AGCACCGCCTTACAA CGGGCGGCG GCTT CGTCGCCCG GCAGGTGCTCGAGAT TERM 3886 5474316 - 5474288 - G 82 -17.5 -3.06796 | overlap 5474297 TCGGATCGTAGGCAA CGCCGAGAAGCTC GAA GAACTCCTCGGCG GATCCGGCAATCTGC Rpal_5088 5475600 - 5474407 - | homocitrate synthase Rpal_5089 5476825 - 5475593 - | cysteine desulfurase NifS Rpal_5090 5477808 - 5476822 - | Fe-S cluster assembly protein NifU TERM 3887 5477067 - 5477091 + g 70 -10.6 -3.57144 | CGACCAGTCCAGCCG GCGGCGTCGC CGGAC GCGGCGCAGC TTTGGCAATCGGGCG TERM 3888 5477160 - 5477215 + g 74 -14.6 -3.01924 | gap 1, opp_overlap 5477140 CGGCCGGAGCCGGCG CGCCATGGGGCTTCAGCTCGGTGGCGC GCG GCGTCGCCGAGCCGATGCGGTA-GGCG TCTTCGGCCGGGATC Rpal_5091 5478156 - 5477836 - | iron-sulfur cluster assembly accessory protein TERM 3889 5478218 - 5478192 - R 78 -12.2 -3.7732 | GTCCGACATGAACAA GTGCAACCGCTG TGC CAGCGGAGGCAC AGCGGCAAACTACTG Rpal_5092 5479148 - 5478438 - | NifQ family protein Rpal_5093 5479477 - 5479166 - | ferredoxin III, nif-specific TERM 3890 5479504 - 5479546 + r 71 -9.1 -3.75629 | TCGCGCGGCCAATGG GCCGCGCAGTTCG-GGCTGAG GCG TTCGGCCGCGATCAG-GCGGC TTTCGCTTCCAGCTC Rpal_5094 5479744 - 5479538 - | protein of unknown function DUF683 Rpal_5095 5480227 - 5479763 - | nitrogen fixation protein Rpal_5096 5480627 - 5480229 - | nitrogen fixation protein NifX Rpal_5097 5482056 - 5480683 - | nitrogenase molybdenum-iron cofactor biosynthesis protein NifN Rpal_5098 5483530 - 5482067 - | nitrogenase MoFe cofactor biosynthesis protein NifE TERM 3891 5483417 - 5483441 + g 77 -12.1 -3.75598 | overlap 5483381 5483404 5483418 5483435 ACCGGCTGCGCCCCC CGGCTGCAGCG GTT TGCTGCAGCCC TTCTTGCGTTGCTTG TERM 3892 5483418 - 5483440 + g 76 -15.6 -2.84636 | overlap 5483381 5483404 5483417 5483435 CCGGCTGCGCCCCCC GGCTGCAGCG GTT TGCTGCAGCC CTTCTTGCGTTGCTT Rpal_5099 5485129 - 5483570 - | nitrogenase molybdenum-iron protein beta chain TERM 3893 5485157 - 5485194 + r 74 -13.4 -2.86343 | gap 1 CCCAAGAATTCGGTG ACACGGCGCTTCCGGCG GCTGA CGCCGGAAG-GCCGGGG TGTGATGGTTCAGCT Rpal_5100 5486681 - 5485218 - | nitrogenase molybdenum-iron protein alpha chain Rpal_5101 5487649 - 5486753 - | nitrogenase iron protein Rpal_5102 5489128 - 5488226 - | hypothetical protein Rpal_5103 5489422 - 5489144 - | hypothetical protein Rpal_5104 5489625 - 5489425 - | nitrogen fixation protein FixT Rpal_5105 5489896 - 5489663 - | NifZ family protein Rpal_5106 5490195 - 5489896 - | NifZ family protein Rpal_5107 5490977 - 5490192 - | LRV FeS4 cluster domain protein Rpal_5108 5491506 - 5490967 - | Tetratricopeptide TPR_2 repeat protein Rpal_5109 5491866 - 5491510 - | HesB/YadR/YfhF-family protein Rpal_5110 5492098 - 5491877 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein Rpal_5111 5493678 - 5492122 - | nitrogenase cofactor biosynthesis protein NifB TERM 3894 5493553 - 5493578 + g 79 -8.9 -4.30576 | gap 1, overlap 5493522 GGGGCCAGCGGCCGA GCCGCAGCCGGT CTT GCCGGC-GCCGC TTTTGCTGCTGCAGC Rpal_5112 5494031 - 5493837 - | 4Fe-4S ferredoxin iron-sulfur binding domain protein TERM 3895 5494041 - 5494066 + r 71 -9.7 -3.81488 | GGCCATGGTCGGCTC CTGGTTCGCAG AGGG CTGCTGACCAG TTGTCTTTCAAGCCG TERM 3896 5494239 - 5494287 + r 100 -20.4 -3.53012 | gap 1, opp_overlap 5494244 5494246 5494248 5494251, overlap 5494243 5494251 TGCTTCGAAGCGCCC ACAGACAGACAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTGTCTGA-TGA TTTCAAGCGGGAAGG TERM 3897 5494243 - 5494284 + r 100 -26.7 -2.90496 | opp_overlap 5494244 5494246 5494248 5494251, overlap 5494239 5494251 TCGAAGCGCCCACAG ACAGACAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTGTCTGA TGATTTCAAGCGGGA TERM 3898 5494283 - 5494244 - R 100 -28 -2.88579 | opp_overlap 5494243 5494239 5494251, overlap 5494246 5494248 5494251 CGAAGCGCCCACAGA CAGACAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTGTCTG ATGATTTCAAGCGGG TERM 3899 5494281 - 5494246 - R 100 -24.8 -2.99319 | opp_overlap 5494243 5494239 5494251, overlap 5494244 5494248 5494251 AAGCGCCCACAGACA GACAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTGTC TGATGATTTCAAGCG TERM 3900 5494279 - 5494248 - R 100 -21.6 -3.05022 | opp_overlap 5494243 5494239 5494251, overlap 5494246 5494244 5494251 GCGCCCACAGACAGA CAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTG TCTGATGATTTCAAG TERM 3901 5494251 - 5494276 + r 100 -19.7 -3.58802 | opp_overlap 5494248 5494246 5494244 5494251, overlap 5494243 5494239 CCCACAGACAGACAA GGCGCGGCGCC AGGG GGCGTCGCGCC TTGTCTGATGATTTC TERM 3902 5494276 - 5494251 - R 100 -17.5 -3.66896 | opp_overlap 5494251 5494243 5494239, overlap 5494248 5494246 5494244 CCCACAGACAGACAA GGCGCGGCGCC AGGG GGCGTCGCGCC TTGTCTGATGATTTC Rpal_5113 5496058 - 5494304 - | transcriptional regulator, NifA, Fis Family Rpal_5114 5497192 - 5496371 - | short-chain dehydrogenase/reductase SDR TERM 3903 5496877 - 5496890 + g 70 -3.7 -4.45664 | overlap 5496874 TCAGCGCATGCAGCG GCCCG CCGC CGAGC TTTTCCTTCAATTCG TERM 3904 5498031 - 5498057 + G 83 -13.6 -3.76373 | overlap 5498032 GACGGTGTCGCCAGC CCGCTCGGCGGC GTC GGCGCCGAGCGC TTTGAGTATTCCCAG TERM 3905 5498032 - 5498056 + G 82 -17.1 -2.85503 | overlap 5498031 ACGGTGTCGCCAGCC CGCTCGGCGGC GTC GGCGCCGAGCG CTTTGAGTATTCCCA Rpal_5115 5497524 - 5498378 + | hypothetical protein TERM 3906 5498393 - 5498424 + T 72 -12.3 -3.34894 | gap 1, overlap 5498390 5498394 AGAACTCATCACGTT GGTCG-TGGCCGGG CTTGT CCCGGCCATCGACG TCTTTGCCGCAACTT TERM 3907 5498394 - 5498423 + T 77 -15.8 -2.60615 | gap 1, overlap 5498393 5498390 GAACTCATCACGTTG GTCG-TGGCCGGG CTTGT CCCGGCCATCGAC GTCTTTGCCGCAACT Rpal_5116 5500406 - 5498526 - | ferrous iron transport protein B Rpal_5117 5500734 - 5500444 - | FeoA family protein Rpal_5118 5501096 - 5501257 + | hypothetical protein TERM 3908 5501398 - 5501367 - T 100 -16.7 -4.56597 | gap 1 CCCTCCCCCTAAAAA CGTCGATGCCCGGC ACGAG GCCGGGCAT-GACG CGGAGTCGAAGGGGG Rpal_5119 5503119 - 5501428 - | methyl-accepting chemotaxis sensory transducer TERM 3909 5502551 - 5502531 - G 83 -9.7 -4.30576 | overlap 5502532 CCGCCAGCACCAAAA TGGTGACGA CGA TCGTCACCG CCGAACTGTAAGTCG TERM 3910 5502550 - 5502532 - G 72 -13.2 -3.18024 | overlap 5502531 CGCCAGCACCAAAAT GGTGACGA CGA TCGTCACC GCCGAACTGTAAGTC TERM 3911 5503210 - 5503159 - R 74 -13.2 -3.31022 | gap 3, opp_overlap 5503159 5503159 ATCAAATATCAGGAA TCGG-T-ACGACACCGCACGACCGC ACGGA GCGGCCG-GCGGTGTCGCGATCCAA TTCTGGAACCAACTT TERM 3912 5503436 - 5503405 - R 89 -13.1 -4.13014 | gap 1, opp_overlap 5503405 CTCAGACGGTGAAAA CGTCAATGGCCGGG GCGAG CCCGGCCAT-AACG TGGTTGAGAGAAAGA TERM 3913 5503486 - 5503520 + r 73 -11.2 -3.56594 | opp_overlap 5503484 CGCCGATGATACAGC CCGCACGGCCGGCGGA AGT TACGCCGCCCGCACGG TTTCGAGGAATTTGG Rpal_5120 5505195 - 5503504 - | methyl-accepting chemotaxis sensory transducer TERM 3914 5505237 - 5505219 - R 82 -3 -5.24129 | opp_overlap 5505221, overlap 5505204 5505221 5505222 TCCTGTGAGAAAAAA CAGGACGC GCG GCGTCGTT CGATAACAGAGCCGG TERM 3915 5505235 - 5505221 - R 71 -5.6 -4.25873 | opp_overlap 5505221, overlap 5505204 5505219 5505222 CTGTGAGAAAAAACA GGACGC GCG GCGTCG TTCGATAACAGAGCC Rpal_5121 5505787 - 5505401 - | hypothetical protein TERM 3916 5505894 - 5505917 + r 72 -2.3 -4.72188 | overlap 5505891 AGGAAACGCAAGCAG CGACCACCG AACCGG CGCTGATCG TTTCTTTTCCGTTGC TERM 3917 5506054 - 5506032 - R 100 -22 -4.20806 | opp_overlap 5506026 5506023 GAGGCCAAAAGCAAA CGGCCCGCGC AGG GCGCGGGCCG TGAGAGTAATTCGTG Rpal_5122 5507469 - 5506084 - | Ribulose-bisphosphate carboxylase Rpal_5123 5508613 - 5507528 - | fructose-bisphosphate aldolase, class II, Calvin cycle subtype Rpal_5124 5510690 - 5508675 - | transketolase TERM 3918 5509953 - 5509971 + g 70 -10.3 -3.66018 | GGTGCGGCAGGCGAT CAGCGAC GGACG GTCGCTG TTCTTGGCCTGCTCG Rpal_5125 5511600 - 5510725 - | Phosphoribulokinase Rpal_5126 5512669 - 5511638 - | Inositol phosphatase/fructose-16-bisphosphatase TERM 3919 5512578 - 5512606 + g 90 -6.6 -5.252 | gap 1, overlap 5512568 TCGATCGATCCCGCG GCGATCGC-GCCG ACCG CGGCGGCGACAGC TTTTTTCTGCGGATC TERM 3920 5512765 - 5512786 + H 86 -6.7 -4.96848 | gap 1 AAGAGAAATTGCATT TTCC-TTGGT ACC ACCAAAGGAA TTTTTATATAGAGCG Rpal_5127 5513141 - 5513890 + | alpha/beta hydrolase fold TERM 3921 5514013 - 5513974 - T 70 -7.9 -4.08216 | gap 1, overlap 5513977 5514012 TGAGTGCTCCGAAAA CCAGTCGCTCCGCTCGTC CTTGT AAGGAGCGGAGCAAC-GA AGCCCTTACTTCACA TERM 3922 5514011 - 5513977 - T 71 -12.9 -3.08032 | overlap 5513974 GTGCTCCGAAAACCA GTCGCTCCGCTCGTC CTTGT AAGGAGCGGAGCAAC GAAGCCCTTACTTCA Rpal_5128 5514774 - 5514019 - | transcriptional regulator, IclR family TERM 3923 5514807 - 5514838 + r 71 -10.8 -3.53012 | opp_overlap 5514778 5514807 5514809 5514810, overlap 5514808 ATCTCTTTGTTGAAA TAGCGACCGGCAGT CGTA ACTGCCGGTCGAAG TTTGCGACGCGCCGG TERM 3924 5514836 - 5514809 - R 84 -15.6 -3.34398 | opp_overlap 5514808 5514807, overlap 5514778 5514807 5514810 CTCTTTGTTGAAATA GCGACCGGCAGT CGTA ACTGCCGGTCGA AGTTTGCGACGCGCC TERM 3925 5514835 - 5514810 - R 87 -19.1 -2.60496 | opp_overlap 5514808 5514807, overlap 5514778 5514809 5514807 TCTTTGTTGAAATAG CGACCGGCAGT CGTA ACTGCCGGTCG AAGTTTGCGACGCGC Rpal_5129 5515943 - 5514855 - | extracellular solute-binding protein family 1 Rpal_5130 5517767 - 5515977 - | binding-protein-dependent transport systems inner membrane component TERM 3926 5517694 - 5517669 - G 70 -8.9 -3.93236 | opp_overlap 5517676 5517677 GATGAAGCCCAGAAA CGCCACCGCCG GCAG CAGCAGCAGCG CCGGGTTCTTCAGCT Rpal_5131 5518909 - 5517764 - | spermidine/putrescine ABC transporter ATPase subunit Rpal_5132 5519165 - 5519971 + | coenzyme A transferase Rpal_5133 5519971 - 5520738 + | coenzyme A transferase TERM 3927 5521048 - 5521032 - f 70 -12.3 -3.14931 | overlap 5521036 GTCAGCTGGGACGAA GCGACCA CGC TGGTCGC GGATGAAATCCGCCG Rpal_5135 5523095 - 5523664 + | uncharacterized peroxidase-related enzyme Rpal_5136 5523746 - 5524432 + | L-fuculose-phosphate aldolase Rpal_5137 5524463 - 5525422 + | PfkB domain protein Rpal_5138 5525469 - 5526215 + | short-chain dehydrogenase/reductase SDR Rpal_5139 5526248 - 5527234 + | quinone oxidoreductase, YhdH/YhfP family TERM 3928 5527263 - 5527284 + F 100 -17.3 -4.54727 | opp_overlap 5527260 GGATGGACGACATTG TGCCCGCGC TTCG GCGCGGGCA TTTTCGTTTGGGAGG Rpal_5140 5527311 - 5527814 + | GCN5-related N-acetyltransferase TERM 3929 5527975 - 5528000 + T 100 -14.7 -4.86731 | opp_overlap 5527977, overlap 5527977 CGCCTCAAACGCGAA AACGCCGCCTC TTGT GAGGCGGCGTG TTTTGTTTGAGCGGA TERM 3930 5527998 - 5527977 - T 100 -17.3 -4.24002 | opp_overlap 5527977 5527975 CCTCAAACGCGAAAA CGCCGCCTC TTGT GAGGCGGCG TGTTTTGTTTGAGCG TERM 3931 5527977 - 5527998 + T 100 -17.3 -4.05678 | opp_overlap 5527977, overlap 5527975 CCTCAAACGCGAAAA CGCCGCCTC TTGT GAGGCGGCG TGTTTTGTTTGAGCG TERM 3932 5529315 - 5529328 + T 81 -4.5 -5.06816 | GTCATCTTGCGATTT CGCAG AGCC CTGTG TTTTTGTTAAACAGT TERM 3933 5530912 - 5530859 - T 93 -18.3 -3.28791 | overlap 5530866 5530872 ACCTTCTCTTGATAA CCGGAAATCCAAACCCTCACGTCTC TTTC GAAACGCAAGGCCTTGGAGTTCCGG CTATCGAAGGTGGGT TERM 3934 5530905 - 5530866 - T 76 -10.8 -3.69354 | overlap 5530859 5530872 CTTGATAACCGGAAA TCCAAACCCTCACGTCTC TTTC GAAACGCAAGGCCTTGGA GTTCCGGCTATCGAA TERM 3935 5531380 - 5531348 - T 95 -10.6 -4.40804 | overlap 5531349 5531350 CACGATGTCAGAAAA CCCGCCAGGCTG-CGC GTT GCGCCAGCC-GGCGAA TACAAGTTGCGGACG TERM 3936 5531379 - 5531349 - T 70 -11.9 -3.24 | overlap 5531348 5531350 ACGATGTCAGAAAAC CCGCCAGGCTG-CGC GTT GCGCCAGCC-GGCGA ATACAAGTTGCGGAC TERM 3937 5533866 - 5533856 - T 75 -4 -4.74504 | ACCGCAAGCGAAAAA TGAA GGT TTCA CGAATTTCAGATTCC TERM 3938 5534213 - 5534200 - T 74 -5.2 -4.57073 | GATGGGGGTGAAAAA CGGC ACTCGG GCCG AAATGGCGGAGAGAG Rpal_5141 5535999 - 5534515 - | alpha,alpha-trehalose-phosphate synthase (UDP-forming) TERM 3939 5535641 - 5535616 - G 74 -7.6 -4.27584 | gap 1, overlap 5535617 ATCCTGAATCCAAAA CGCGGTATCCG GCTTG CGGA-ACCGCA GCAGCGCGCGCGCCA Rpal_5142 5536953 - 5536156 - | HAD-superfamily hydrolase, subfamily IIB Rpal_5143 5538437 - 5536950 - | major facilitator superfamily MFS_1 TERM 3940 5537160 - 5537124 - G 72 -14.4 -3.07113 | gap 1, overlap 5537126 GATCAGTGCACCGAA CAGCGCCGG-ACCGGCG ACAC CGCCGATGCCGGTGCCG ATCGCGTAAAAGATT TERM 3941 5537158 - 5537126 - G 72 -13.4 -3.09327 | gap 1, overlap 5537124 TCAGTGCACCGAACA GCGCCGG-ACCGGCG ACAC CGCCGATGCCGGTGC CGATCGCGTAAAAGA TERM 3942 5538347 - 5538322 - G 74 -7.5 -4.26344 | ACACGGGTATGAAAA CGGCTCCACAA CAGA CCGTCGAGCCG TGCCGGAATATCGGT TERM 3943 5538487 - 5538511 + r 78 -10 -4.08216 | CAGCGCCGAACGTGG CGATCCATCG GCAAG CGATGGACCG TTTTGCGGAAGGTCA TERM 3944 5538586 - 5538566 - R 81 -14 -3.55563 | opp_overlap 5538563 5538560 5538566 AGCGCACGCGCCAAA CCTGCGGC TGGGC GCCGCAGG TCGTCTTATTGCGCG TERM 3945 5538566 - 5538586 + r 74 -14 -2.85545 | opp_overlap 5538566, overlap 5538563 5538560 AGCGCACGCGCCAAA CCTGCGGC TGGGC GCCGCAGG TCGTCTTATTGCGCG Rpal_5144 5540679 - 5538619 - | methyl-accepting chemotaxis sensory transducer TERM 3946 5540623 - 5540603 - G 72 -6.7 -4.25283 | opp_overlap 5540605 5540609, overlap 5540607 ACCTTGCCACGAAAA CGCAGAGCC GGT AGCGCCGCG GACTTATCCCGCGCT Rpal_5145 5541526 - 5540780 - | transcriptional regulator, AraC family Rpal_5146 5541865 - 5543526 + | 2-isopropylmalate synthase TERM 3947 5543585 - 5543545 - f 100 -14.1 -4.66163 | gap 1, opp_overlap 5543542 5543546, overlap 5543548 ATTGCTACCCAAAAA GCAGGGATGCACCGGCTG ACGTCG CAGCCGGTGCATCGC-AC AGTTCCTTTTCGCTG TERM 3948 5543546 - 5543587 + F 78 -11.7 -3.69605 | gap 2, opp_overlap 5543545 5543548, overlap 5543542 TTGCTACCCAAAAAG CAG-G-GATGCACCGGCTG ACGTCG CAGCCGGTGCATCGCACAG TTCCTTTTCGCTGCA TERM 3949 5543583 - 5543548 - f 93 -19.1 -3.26405 | opp_overlap 5543546 5543542, overlap 5543545 GCTACCCAAAAAGCA GGGATGCACCGGCTG ACGTCG CAGCCGGTGCATCGC ACAGTTCCTTTTCGC Rpal_5147 5543831 - 5544316 + | (2Fe-2S)-binding domain protein TERM 3950 5544817 - 5544795 - g 71 -9 -3.89354 | opp_overlap 5544795 5544801 5544807, overlap 5544788 CGCCGAAAGCAAGAA CCTCGCCCGC GAC GCCGCCGAGG CCGTGGTGGTTCATT TERM 3951 5545264 - 5545253 - g 79 -7.2 -4.63218 | overlap 5545254 GGGCCTCGAAGAAAA CCGG CCGC CCGG TGAAATGGACCGGTG Rpal_5148 5544427 - 5546781 + | aldehyde oxidase and xanthine dehydrogenase molybdopterin binding Rpal_5149 5546890 - 5547690 + | Carbon-monoxide dehydrogenase (acceptor) TERM 3952 5547711 - 5547733 + F 100 -22 -4.39329 | opp_overlap 5547696 5547695 TCCACTTCACGGCAA GCGGCGCGCG GTT CGCGCGCCGC TTTGTTGTGTGCGGT Rpal_5150 5547875 - 5548990 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 3953 5549081 - 5549026 - T 74 -10.4 -3.72576 | gap 1, opp_overlap 5549000 5549000, overlap 5549027 5549030 GGGGCGCTCACGAAA GTGAGCGAACCCGGAAGCCAGACGTTA TGA TCACCTCGAGATTCCGGGTTCGCGC-C TGGCGGCGCGCCCCG TERM 3954 5549078 - 5549030 - T 77 -15.3 -2.67803 | opp_overlap 5549000 5549000, overlap 5549026 5549027 CGCTCACGAAAGTGA GCGAACCCGGAAGCCAGACGTTA TGA TCACCTCGAGATTCCGGGTTCGC GCCTGGCGGCGCGCC Rpal_5151 5550383 - 5549115 - | fumarylacetoacetase Rpal_5152 5551332 - 5550676 - | maleylacetoacetate isomerase Rpal_5153 5552675 - 5551329 - | homogentisate 1,2-dioxygenase TERM 3955 5552001 - 5552028 + g 75 -9 -4.08216 | overlap 5552004 GCCGATCGGGCCGCG CTCCGGCAGCGT GAAG GCGCCGCCGTAG TTTTCGCACAGATAG Rpal_5154 5553685 - 5552732 - | beta-lactamase domain protein TERM 3956 5553739 - 5553792 + r 93 -18.9 -3.28712 | gap 1, opp_overlap 5553776, overlap 5553776 GCGCGCTGATCATTC CAGGTCGTCATTCCGGG-GCGCTCGC GCA GCGAGCGAACCCGGAATCCCGAGCTG TTCTGCGACCGCCGC Rpal_5155 5554130 - 5553912 - | hypothetical protein TERM 3957 5554272 - 5554248 - R 83 -15.7 -3.16564 | GGGCGACGCGAGCAA GGCGTCTCGGC CTC GTCGAGACGCC CCCTCACCCGGTCCG TERM 3958 5554308 - 5554331 + r 90 -18.2 -3.10164 | CGCGATCCTGACCGA CCTCTCCCCG CACG CGGGGAGAGG TTAGGTCGTGCGTGC Rpal_5156 5556027 - 5554420 - | monooxygenase FAD-binding Rpal_5157 5556154 - 5556651 + | transcriptional regulator, MarR family TERM 3959 5557514 - 5557562 + G 70 -6.6 -4.1891 | gap 2, overlap 5557515 CGCCGTCACCCGCGC CTCGCGCGGCGAGCAGGTGCCGTG GAT CTCGTCATC-GCTCGCCGAG-GAC TTTGTGTTCACCCCC Rpal_5158 5556822 - 5558246 + | peptidase C14 caspase catalytic subunit p20 Rpal_5159 5558351 - 5559001 + | OmpA/MotB domain protein Rpal_5160 5559160 - 5560047 + | secretion protein HlyD TERM 3960 5561852 - 5561803 - g 72 -8.5 -4.13767 | gap 1, overlap 5561847 GGCCCGAGGTGAAAA GCGTA-TTCGTCGATGGCGGCCGG GTG CCGCCCGGCATCCAGGAAGTGCGC CGCGCCTCGCTGATC Rpal_5161 5560047 - 5563199 + | acriflavin resistance protein TERM 3961 5563207 - 5563179 - f 81 -4.3 -5.00616 | CCGCCTGCCAAAAAA CCGTCGTTCTGGC GCG GCTAGGTCGGCGG ATCAACGAGCAGCCG Rpal_5162 5563241 - 5565049 + | AsmA family protein Rpal_5163 5565131 - 5566027 + | efflux transporter, RND family, MFP subunit TERM 3962 5566004 - 5566046 + T 77 -12.6 -3.57144 | gap 1 GTGCGCCCGGTGCTG GCCGCC-GGCGCCTCGGCG AAATAA CACCGAGACGCCTGGCTGC TTTAGCCGTAACCGA Rpal_5164 5566343 - 5566089 - | hypothetical protein Rpal_5165 5566901 - 5568580 + | methyl-accepting chemotaxis sensory transducer Rpal_5166 5570259 - 5568622 - | lysyl-tRNA synthetase Rpal_5167 5571249 - 5570293 - | extracellular solute-binding protein family 3 TERM 3963 5571569 - 5571607 + G 73 -14.6 -2.91239 | opp_overlap 5571568 GACATCGGAGCAGAC CGCGTCCTGATCCAGCAG GGT CTGATCGATGAGGACGCG TATCTCCGCTATCTC Rpal_5168 5571290 - 5573341 + | glycosyl transferase family 2 Rpal_5169 5573942 - 5573343 - | electron transport protein SCO1/SenC Rpal_5170 5574576 - 5574118 - | hypothetical protein TERM 3964 5574861 - 5574916 + G 72 -4.4 -4.44046 | gap 1, opp_overlap 5574859, overlap 5574863 GACCGTGACCAGACG CGGCACGCG-CGAGATGGGCTGACGTG CGG CACGACGGCCAATCCAGACGGGCGCAG TTTCTTTCACCTGCA TERM 3965 5574957 - 5574941 - g 73 -9.3 -4.02817 | opp_overlap 5574952, overlap 5574942 CCTGCACAAGAAGAA CGGGCCG GAT CGGCCCC CCGCGCCTTTGTTAG Rpal_5171 5574789 - 5575127 + | hypothetical protein TERM 3966 5576949 - 5576917 - g 70 -11.2 -3.60948 | overlap 5576909 5576930 GAACAGACCGCCAAA GCCACCGACCAGAT CAGCC AGCAGGTCGGCGGC ATCCAGAGCGCCACC Rpal_5172 5575300 - 5577270 + | methyl-accepting chemotaxis sensory transducer Rpal_5173 5577419 - 5577796 + | hypothetical protein TERM 3967 5577929 - 5577961 + T 83 -7.7 -4.56597 | gap 1, overlap 5577929 5577928 5577948 CGCTTCGAACGGATT CGT-CATGGCCGGG CTTCGT CCCGGCCATCCGCG TTTTTCGGACGGCGC Rpal_5174 5579150 - 5577987 - | NADH:flavin oxidoreductase/NADH oxidase Rpal_5175 5579317 - 5580315 + | hypothetical protein Rpal_5176 5580337 - 5581239 + | transcriptional regulator, LysR family TERM 3968 5581243 - 5581293 + F 77 -14 -3.28712 | CTGCCGACCTGATTC CAGCTCACGGTTTTCGGCACGG GCGCTTG CCATGCCGGAAGCCGATAGCTG TTATAGACCACCCGC Rpal_5177 5581366 - 5582484 + | protein of unknown function DUF453 Rpal_5178 5582692 - 5583720 + | amidohydrolase 2 Rpal_5179 5583723 - 5584418 + | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase TERM 3969 5584601 - 5584629 + G 74 -10.4 -3.81951 | gap 2 GTTGTACTGACGACG TCGCATGCGGAGCT TGC AGC-CCGCA-GCGA TTTCATCATCTCGGC Rpal_5180 5584418 - 5585347 + | Phosphogluconate dehydrogenase, NAD-binding, putative-like protein Rpal_5181 5585596 - 5586510 + | amidohydrolase 2 TERM 3970 5586528 - 5586580 + F 100 -20.6 -3.76224 | gap 2, opp_overlap 5586509 CGATCGCCCGCGCGG CATGC-GCGGAC-CTCCCTCTCCCCG CCG CGGGGAGAGGGAGCGGCCGCCGCCCG TTTCGTAACTAACAA Rpal_5182 5586616 - 5587005 + | protocatechuate 4,5-dioxygenase, alpha subunit Rpal_5183 5587005 - 5587859 + | Protocatechuate 4,5-dioxygenase Rpal_5184 5587861 - 5588820 + | oxidoreductase domain protein TERM 3971 5588856 - 5588877 + F 100 -13 -4.71426 | opp_overlap 5588856 TCGCATTGGTTCAAA TGGCCGGG CACCGT CCCGGCCA TTTTCTTGATCGCGC TERM 3972 5588877 - 5588856 - f 77 -13 -3.54424 | opp_overlap 5588856 TCGCATTGGTTCAAA TGGCCGGG CACCGT CCCGGCCA TTTTCTTGATCGCGC Rpal_5185 5589013 - 5589411 + | hypothetical protein TERM 3973 5589424 - 5589478 + F 73 -11.5 -3.54424 | opp_overlap 5589425, overlap 5589428 TGACCGCTGGAATTC AGC-CCTCAGGCGCGATTGTCCTGCCT CTA AGGTCGGA-GATCGCGCCTGAGTTGCG TTTACACGACTGACA TERM 3974 5589428 - 5589473 + F 95 -19.9 -3.27525 | gap 1, opp_overlap 5589425, overlap 5589424 CGCTGGAATTCAGCC CTCAGGCGCGATTGTCCTGCCT CTA AGGTCGGA-GATCGCGCCTGAG TTGCGTTTACACGAC Rpal_5186 5589517 - 5589912 + | phosphoribosyl-ATP diphosphatase Rpal_5187 5590014 - 5590595 + | DedA Rpal_5188 5590648 - 5591319 + | putative exported protein of unknown function Rpal_5189 5591465 - 5592433 + | 2-nitropropane dioxygenase NPD Rpal_5190 5592590 - 5593363 + | hypothetical protein TERM 3975 5593496 - 5593475 - f 76 -13.7 -3.19602 | gap 1, opp_overlap 5593487, overlap 5593473 CTCGGCACATCAATA GGGCCGCCGC GAT GCGG-GGCCC GTTCGACGACCGATC Rpal_5191 5593553 - 5593807 + | hypothetical protein Rpal_5192 5593933 - 5594661 + | putative exported protein of unknown function Rpal_5193 5596463 - 5594715 - | Tetratricopeptide TPR_2 repeat protein Rpal_5194 5596708 - 5597679 + | putative peptidase PatA-like protein Rpal_5195 5598242 - 5597652 - | hypothetical protein Rpal_5196 5599511 - 5598390 - | molybdate ABC transporter, ATPase subunit Rpal_5197 5600194 - 5599508 - | molybdate ABC transporter, inner membrane subunit TERM 3976 5600018 - 5600003 - G 82 -6.1 -4.75289 | overlap 5600005 CACCAGAAGATAAAA GCCGA GCACGG TCGGC GGCAGCACCAGCGGC TERM 3977 5600255 - 5600232 - R 91 -18.2 -3.14132 | GGTGCGCCGGACGAA CCTCTCCCCG CGTG CGGGGAGAGG TCGACGCGCATCGCA Rpal_5198 5601213 - 5600440 - | molybdenum ABC transporter, periplasmic molybdate-binding protein Rpal_5199 5602149 - 5601358 - | transcriptional regulator, ModE family Rpal_5200 5602248 - 5602457 + | TOBE domain protein TERM 3978 5602545 - 5602487 - T 74 -12.5 -3.28368 | gap 2, overlap 5602478 5602488 ATCCAAGCGACAACA GGTCGCGCCCACCCATTACTTCAGCGCCT CGC AGATGCTGACGTGA-GGGTGGGCGGGA-C GGCGAAAGCTGCGAC TERM 3979 5602545 - 5602488 - T 86 -18.5 -2.56539 | gap 1, overlap 5602478 5602487 TCCAAGCGACAACAG GTCGCGCCCACCCATTACTTCAGCGCCT CGC AGATGCTGACGTGA-GGGTGGGCGGGAC GGCGAAAGCTGCGAC Rpal_5201 5603071 - 5602502 - | hypothetical protein TERM 3980 5604915 - 5604882 - g 80 -15.3 -3.29461 | gap 1 CAAGGCGCGCGAGAA CGGCGACGCCGGCGTG CGT CATGCCGGCATC-CCG GCGCTGACCAAGCTG TERM 3981 5608278 - 5608245 - g 76 -15.1 -3.14132 | CGGCGCGCTGATGAA CGGCTTCGCGGCAGC TCCG GCGGCCGCGGCGCCG ACCAACGGTGCCAAG Rpal_5202 5603554 - 5608542 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein Rpal_5203 5608539 - 5611373 + | oxidoreductase FAD/NAD(P)-binding domain protein TERM 3982 5611517 - 5611534 + F 100 -14.1 -4.87291 | ATGGTGTCTTCGAGT GGCCGGG TTCG CCCGGCC TTTTTCGTTGGCGTC TERM 3983 5613355 - 5613336 - g 70 -2 -4.59773 | overlap 5613339 CGGCACCGGCAAAAA CAAGATCG GCTT CGATCAGG TGCCGGTCGACCGTG TERM 3984 5613352 - 5613339 - g 75 -6.7 -4.41633 | overlap 5613336 CACCGGCAAAAACAA GATCG GCTT CGATC AGGTGCCGGTCGACC Rpal_5204 5611612 - 5614689 + | DNA polymerase I Rpal_5205 5615008 - 5615571 + | orotate phosphoribosyltransferase TERM 3985 5615659 - 5615620 - f 85 -14.2 -3.60627 | gap 1 CCATCCCATCCTAAA GTCGCGACCA-ACAGCGGC CTA GCCGCAGGGTGGTCGCGTC GGTGGAGTGGGCGTT TERM 3986 5615934 - 5615889 - g 73 -5.9 -4.3534 | gap 1, opp_overlap 5615908, overlap 5615892 CCTCAATCAGCAAAA CCAGCAGCCGCAACCGCAACGC CAG GCGTC-CGCCGGCGGCGGCCCG GCGTTCTGCGTACGC Rpal_5206 5615731 - 5616477 + | hypothetical protein TERM 3987 5616642 - 5616591 - T 73 -8.1 -4.06419 | gap 3, overlap 5616592 GCCTCGGACAAATAA CCGCGAG--ATTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAATGACTCCCGT AAAGGCTTCGCTCGC Rpal_5207 5617182 - 5616751 - | hypothetical protein TERM 3988 5617234 - 5617220 - H 71 -12.8 -3.08912 | GACCATACATATAGA CGGCGC ACC GCGCCG AATCGCAATGATAAC TERM 3989 5617419 - 5617405 - H 73 -7 -4.36914 | overlap 5617407 CGTTTTTGCACAAAA GCCGGG CAT CCCGCC GCAACGATGCCCTCG Rpal_5208 5617466 - 5620012 + | glycogen/starch/alpha-glucan phosphorylase TERM 3990 5620128 - 5620169 + F 83 -15.9 -3.12351 | gap 1, overlap 5620132 TTTTCCGACACCTGC GATATTCCGGGTTCGCGCGT TTC ACGCGCGC-CCCGGAATGAC TTGCGTGTGGGCGCG TERM 3991 5620132 - 5620165 + F 83 -17.5 -2.56095 | gap 1, overlap 5620128 CCGACACCTGCGATA TTCCGGGTTCGCGCGT TTC ACGCGCGC-CCCGGAA TGACTTGCGTGTGGG Rpal_5209 5620293 - 5621126 + | hypothetical protein TERM 3992 5621143 - 5621161 + F 74 -11.6 -3.53444 | overlap 5621144 TTGGCGCAGCGCTCC GGCGCGCG TCG CGCGCGCA TTTGAAGGGGCGTCA TERM 3993 5621144 - 5621160 + F 78 -15.1 -2.71924 | overlap 5621143 TGGCGCAGCGCTCCG GCGCGCG TCG CGCGCGC ATTTGAAGGGGCGTC TERM 3994 5621628 - 5621658 + G 80 -15.4 -3.25823 | opp_overlap 5621613 CCCGGCCACCACGCT CACCGCCAACATGC ACG GCATGTCGGCGGCG TTCCTGTGCGGCGAG TERM 3995 5621713 - 5621735 + G 74 -7.6 -4.16842 | overlap 5621721 GACGAGCCGCGGGTG TCGATCCCGC CGA GCCGGCTCGA TTTGTTCGGCATCCG Rpal_5210 5621182 - 5622165 + | arginase Rpal_5211 5622436 - 5623395 + | transposase IS116/IS110/IS902 family protein Rpal_5212 5623522 - 5625141 + | ABC transporter related Rpal_5213 5626482 - 5625289 - | hypothetical protein Rpal_5214 5626643 - 5627221 + | ChaC family protein Rpal_5215 5628047 - 5627238 - | phospholipid/glycerol acyltransferase Rpal_5216 5628786 - 5628061 - | protein of unknown function DUF218 Rpal_5217 5629928 - 5628942 - | protein of unknown function DUF214 Rpal_5218 5630580 - 5629921 - | cell division ATP-binding protein FtsE TERM 3996 5631569 - 5631535 - g 75 -14.3 -3.28712 | opp_overlap 5631563, overlap 5631501 TCGCCTGGTTCAGAA CGCGCCTCGCCTC-GCC GCC GGCGGAGGCGCG-CGCG ATCGACGTGCGCTTC Rpal_5219 5630724 - 5631620 + | MJ0042 family finger-like protein Rpal_5220 5631680 - 5632060 + | response regulator receiver protein Rpal_5221 5634811 - 5632259 - | hypothetical protein Rpal_5222 5634971 - 5635351 + | Carboxymuconolactone decarboxylase Rpal_5223 5636852 - 5635587 - | diaminopimelate decarboxylase Rpal_5224 5637142 - 5636861 - | hypothetical protein Rpal_5225 5638594 - 5637197 - | argininosuccinate lyase TERM 3997 5637225 - 5637257 + g 95 -10.6 -4.57073 | gap 1 GTGTCCTTGGCGAGC CGCTTG-AGCCAGGC CTTG GCCTGGCTGCGAACG TTTTTCGGCGCGGTG TERM 3998 5638642 - 5638674 + H 91 -9.1 -4.61747 | gap 1 ATCACATCTCATCAC CGGCAG-CCGCCCG CGAACC TGCGCGGCCTGCCG TTTTCTGATTGTTCG Rpal_5226 5638690 - 5639376 + | Redoxin domain protein Rpal_5227 5639709 - 5639521 - | putative exported protein of unknown function Rpal_5228 5640636 - 5639818 - | Ribosyldihydronicotinamide dehydrogenase (quinone) Rpal_5229 5640713 - 5641627 + | transcriptional regulator, LysR family Rpal_5230 5642523 - 5641642 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 3999 5642666 - 5642649 - R 77 -14.1 -3.33696 | opp_overlap 5642649 GGCTTCTGCAACGAA CCCGGCC CGAG GGCCGGG TTCGTCCGCCGCGAG TERM 4000 5642649 - 5642666 + r 76 -14.1 -3.14132 | opp_overlap 5642649 GGCTTCTGCAACGAA CCCGGCC CGAG GGCCGGG TTCGTCCGCCGCGAG Rpal_5231 5643633 - 5642689 - | Electron transfer flavoprotein alpha subunit Rpal_5232 5644382 - 5643633 - | Electron transfer flavoprotein alpha/beta-subunit TERM 4001 5643765 - 5643792 + g 70 -8.3 -3.97139 | opp_overlap 5643753, overlap 5643742 5643754 AACGTCGACGCCGTA GTCGGCCGCGG TCTTCT CCGCGATCGGC TTCTTCTTGGCCTTC TERM 4002 5644036 - 5644055 + g 74 -2 -4.77036 | TCGATCGCCTGCTTA CCGAGAAT GATC AGTCCCGG TTTTTCCTCGTCGGC TERM 4003 5644494 - 5644476 - R 72 -2.2 -4.81249 | overlap 5644468 CGGCAAAGCCAAAAA CCGCCTTG TTC CCTAGCGG TTCTGGCCCGGCACC Rpal_5233 5645060 - 5644488 - | ATP/cobalamin adenosyltransferase Rpal_5234 5645307 - 5645113 - | hypothetical protein TERM 4004 5645985 - 5646022 + Gr 70 -9.9 -3.57406 | gap 1, opp_overlap 5646007, overlap 5646005 GCTGCTGACGTTCGC GCGCTACGGT-ATCGC GATCACA GCGCTGACCGTGGCGC TGTTTCTGCTGCACG Rpal_5236 5647483 - 5646266 - | histidine kinase Rpal_5235 5645446 - 5646339 + | ribonuclease BN TERM 4005 5646874 - 5646860 - GT 76 -9.2 -4.07687 | opp_overlap 5646860 5646859 ATTGGCCTGGGAAAA CGGCCG AAA CAGCCG CTTGATCTCGGTGAG Rpal_5237 5648464 - 5647583 - | glutamyl-tRNA synthetase class Ic TERM 4006 5647620 - 5647675 + g 74 -12.6 -3.55622 | gap 3, opp_overlap 5647590 ACCATCGTCCGGATT TCGGCGGGCGTGACGCCGGCC-GCGCG CAGCT CGCGCAGGCCGG--TCGAGCCGGTCGA TTTCGACAGCTTGCG TERM 4007 5649156 - 5649174 + G 77 -16 -2.94416 | opp_overlap 5649126 5649124 AACCCTGGCGCCCGC TGCGCGGC GCC GCCGCGCA TCTGTGGTGGGCCTA Rpal_5238 5648585 - 5649304 + | HhH-GPD family protein TERM 4008 5649376 - 5649339 - T 70 -12.1 -3.18582 | opp_overlap 5649343, overlap 5649343 GAGCGGAGCGACGAA GCAATCCAGGGGCTC GGTGCAGG AAGCCTCTGGATTGC TTCGCCTTCGGCTCG Rpal_5239 5649883 - 5649440 - | putative transcriptional regulator, CopG family TERM 4009 5649815 - 5649839 + g 89 -11.3 -4.1899 | GCGGTTCTGGTAGCC GCGCGCCGCGA TGA TCGCGTCGAGC TTTTCCATCAGGTCG Rpal_5240 5650070 - 5652241 + | TonB-dependent receptor TERM 4010 5652359 - 5652318 - f 93 -13.8 -4.1196 | gap 2, overlap 5652325 AAGGGAGCCCCAAAA CGACGAACGCGCGCCGACGT GTGA ACGCCGACGCGCGC-C-TCG TAACTCGCTGGTTCC TERM 4011 5652354 - 5652325 - f 93 -19.3 -3.37533 | overlap 5652318 CCCCAAAACGACGAA CGCGCGCCGACGT GTGA ACGCCGACGCGCG CCTCGTAACTCGCTG Rpal_5241 5652657 - 5653010 + | PRC-barrel domain protein Rpal_5242 5654673 - 5653057 - | alpha amylase catalytic region TERM 4012 5653470 - 5653525 + g 87 -14.7 -3.78934 | gap 2 CGGCGTTGTCCGACG CGTCCCACTGCATCGGCGTGCGGCAGC CATC GCGGCCG-ACACCGATGCCG-GGCACG TTCTTCTCGAACGGA Rpal_5244 5655187 - 5655720 + | hypothetical protein TERM 4013 5655753 - 5655777 + F 100 -17.2 -5.00884 | opp_overlap 5655756, overlap 5655764 5655767 CTTATTGAGTTGTTA GAAGCGCCGG CTTGT CCGGCGCTTC TTTTTTGCGCCGCAT TERM 4014 5655774 - 5655756 - f 74 -13.1 -3.30243 | opp_overlap 5655753 5655764 5655767 ATTGAGTTGTTAGAA GCGCCGG CTTGT CCGGCGC TTCTTTTTTGCGCCG Rpal_5245 5656000 - 5656524 + | hypothetical protein TERM 4015 5656535 - 5656506 - T 76 -13.6 -3.17212 | overlap 5656491 GCACGACCTGAGCAA CGCGGTCGGC AAGCCCTGAG GCCGACCGCG AAACGCATCGTGCCG Rpal_5246 5656691 - 5656554 - | hypothetical protein TERM 4016 5657350 - 5657367 + G 74 -12.7 -3.53012 | GCGAGATCGACACCC GCCGCAG GCTG CTGCGGC TTTGCCCGGACGCCC Rpal_5247 5657223 - 5657816 + | methylated-DNA/protein-cysteine methyltransferase Rpal_5248 5659249 - 5657813 - | multi antimicrobial extrusion protein MatE TERM 4017 5658581 - 5658560 - G 74 -7.9 -4.18197 | overlap 5658561 AGCGCCGATCGAAAA TGCCGTCAG CGTG CCGGCGGCA ACGCCGGGCATGCCG TERM 4018 5660532 - 5660558 + G 74 -12.3 -3.54741 | gap 1 CATGATCGGCTCGTT CCCGGTCGACGG CGAT CCGTCG-CTGGG TTTCCGCGCGTCCTA Rpal_5249 5659759 - 5661738 + | metallophosphoesterase Rpal_5250 5662904 - 5661798 - | 2-deoxycytidine 5-triphosphate deaminase TERM 4019 5663102 - 5663074 - H 70 -10.3 -3.59649 | gap 1, opp_overlap 5663095 AAACAAGTCGCTAAA CAGGCCGGGGAC GTTGTG GTCC-CGGCCCG AGGGTTGAGCCCCAG TERM 4020 5663095 - 5663122 + H 100 -11.2 -5.60993 | gap 1, opp_overlap 5663074 GGGGACGTTGTGGTC CCGGCCCGAGGGT TGA GCCC-CAGGCCGG TTTTTTTGTGCCCGC Rpal_5251 5663168 - 5664379 + | O-succinylhomoserine sulfhydrylase TERM 4021 5664438 - 5664414 - T 85 -15.7 -3.45945 | opp_overlap 5664410 GTGAGCGAGAAGTAA CGGGACGACGC ATC GCGTCGTCCGG GGACTGCTTCAGAGA Rpal_5252 5665495 - 5664527 - | lipolytic protein G-D-S-L family TERM 4022 5665466 - 5665454 - G 89 -10.5 -4.56597 | opp_overlap 5665454 5665453, overlap 5665439 5665455 CGCCGTCGCCAAAAA CGCCG CGA CGGCG GCAGGTTTCAAAGGG Rpal_5253 5666274 - 5665495 - | hypothetical protein Rpal_5254 5667536 - 5666271 - | hypothetical protein TERM 4023 5668145 - 5668117 - g 77 -5.1 -4.58283 | opp_overlap 5668125, overlap 5668118 5668119 GAAGCGGGCGAAAAA TTCGAGATCGACG TCC CGCCGTTCTCGCT CGACAGCCCAGAAGG Rpal_5255 5667787 - 5668179 + | ApaG domain protein Rpal_5256 5669285 - 5668239 - | hypothetical protein TERM 4024 5668603 - 5668629 + g 79 -8.7 -4.30576 | gap 1, overlap 5668603 GCGACGCCTTCGAAC GG-CGCGGTGAA ATCC TTCCCCGCGGCC TTTTCCTCATCGACA TERM 4025 5669796 - 5669785 - R 88 -7.2 -4.87803 | opp_overlap 5669785, overlap 5669786 TACTTCGAAACAAAA CGCG CAAT CGCG TTTGCACGAAATACC Rpal_5257 5671325 - 5670270 - | Hsp33 protein TERM 4026 5671465 - 5671516 + r 81 -15.9 -3.05384 | gap 3, opp_overlap 5671447 GCGGACGCAGCTCAC GCCGGATGAG-GGGCCGACTGGAGCG CTG TGCCCC-G-CGGCCCTCTCACCCGGC TTCGCTACGCGAAGC Rpal_5258 5672526 - 5671597 - | ornithine carbamoyltransferase Rpal_5259 5673737 - 5672526 - | acetylornithine and succinylornithine aminotransferase TERM 4027 5673770 - 5673758 - H 74 -4.7 -4.62336 | overlap 5673759 ATCCGATCGGAAAAA GCGGG CCG CCGGC CGGACGCGTCACGCG TERM 4028 5673853 - 5673830 - H 100 -18.2 -4.06055 | opp_overlap 5673826 5673825 ACCCCGGAAACGAAA CGTGCCGCCT TTCC AGGCGGCACG TGGGATTATTCTAGA Rpal_5260 5674213 - 5674722 + | GcrA cell cycle regulator TERM 4029 5674924 - 5674887 - T 100 -22.9 -4.07568 | gap 1, overlap 5674891 GTGGTCGCCCGAAAA TTCAGGAGCCCGCACAGC AAG GCTGCGCGGGCTCC-GAA CTAATCACAGTCGTT TERM 4030 5674921 - 5674891 - T 100 -24.8 -2.74605 | overlap 5674887 TCGCCCGAAAATTCA GGAGCCCGCACAGC AAG GCTGCGCGGGCTCC GAACTAATCACAGTC Rpal_5261 5675676 - 5674963 - | two component transcriptional regulator, winged helix family TERM 4031 5675209 - 5675185 - G 75 -2.7 -4.7254 | overlap 5675186 5675187 5675194 5675195 ATGCTCCAGGAAAAA CTCGAGCAAGC GAT ACTCGGTCGGG CCGAGATCGATCGGC Rpal_5262 5676470 - 5675754 - | phosphate uptake regulator, PhoU Rpal_5263 5677315 - 5676494 - | phosphate ABC transporter, ATPase subunit Rpal_5264 5678175 - 5677312 - | phosphate ABC transporter, inner membrane subunit PstA Rpal_5265 5679178 - 5678177 - | phosphate ABC transporter, inner membrane subunit PstC TERM 4032 5678867 - 5678834 - G 73 -13.2 -3.34013 | CAGCTCGGTAAGGAA GATCGCGATGCCGA GGCCGA CCGGGATCGCGATC ATCATCGCGATCAGC TERM 4033 5679226 - 5679214 - R 70 -10.5 -3.54424 | CTGCAGGGCCCGAAA CCGCG CCT CGCGG CTGGAGATCTGAATT Rpal_5266 5680402 - 5679392 - | phosphate ABC transporter, periplasmic phosphate-binding protein TERM 4034 5680473 - 5680484 + r 74 -5.8 -4.41241 | overlap 5680457 5680483 CGCCCGTCTACGAGC GGTC GGTT GACC TTTTATGAGGGTTTG Rpal_5267 5681897 - 5680551 - | PAS/PAC sensor signal transduction histidine kinase Rpal_5268 5682935 - 5681901 - | hypothetical protein Rpal_5269 5683479 - 5683183 - | hypothetical protein TERM 4035 5683333 - 5683278 - G 100 -18.2 -4.32034 | gap 1, overlap 5683313 CCATGACGAGGAAAA GGTCGAGCCAGTAGCCGGCCCGGCCGG GAA CCAGACGGGCGAGCGAC-AGCCCGACC AGCACCGCTGCGACC Rpal_5270 5684877 - 5683483 - | OmpA/MotB domain protein TERM 4036 5684667 - 5684720 + g 100 -14.4 -4.36914 | opp_overlap 5684615 5684674 CGCGGCGCCCTTCCT CGGAGAACGCCTCGGCGGTCAGCG TGATGT CGCGGCCCGCTGCGGTGATCTTCG TTTTGTCGAGGACGG TERM 4037 5685098 - 5685114 + G 70 -10.1 -3.64716 | opp_overlap 5685088, overlap 5685096 TTACACCGGCGCGCA TCGGGTG CTG CGCCCGA TCTTTTCCGGAATCG TERM 4038 5685344 - 5685358 + G 78 -10 -4.13945 | GCTGGATGACGGCTA TCGCGA CAA TCGCGA TTTTGCCCTGCCGGT Rpal_5271 5685033 - 5686091 + | polysaccharide deacetylase TERM 4039 5686796 - 5686766 - g 74 -10.3 -3.7732 | gap 1 CTCCGACATGAACAA GGCGGCGCGCGACG AATC CGACGCG-GTCGCC AAGCGCGTCCCTGCG TERM 4040 5686864 - 5686914 + G 76 -14.7 -3.17075 | CCGTGTTCCTCGCCT CGCGCGCCGGCGACT-ACGTGGTCG GCT CGACCGTGACGGTCGACGGCG-GCG TTGCCTTCGCCAACC Rpal_5272 5686152 - 5686958 + | short-chain dehydrogenase/reductase SDR TERM 4041 5687028 - 5687062 + F 100 -18.5 -4.18197 | opp_overlap 5687019, overlap 5687029 CATGAATTGCCCACC GCGCAGCCCGCGCCC CCAAA GCGCGCGGGCTGCGG TTTTGCGTCCCACCT TERM 4042 5687029 - 5687061 + F 100 -22 -3.10597 | opp_overlap 5687019, overlap 5687028 ATGAATTGCCCACCG CGCAGCCCGCGCCC CCAAA GCGCGCGGGCTGCG GTTTTGCGTCCCACC TERM 4043 5687106 - 5687124 + F 73 -13.2 -3.18429 | opp_overlap 5687103 5687102 5687106 TTGAATTATAATGCA TCGAACGG CAT CCGTTCGA TTGCTGGCGATTTTG Rpal_5273 5687181 - 5688098 + | transcriptional regulator, XRE family with shikimate kinase activity TERM 4044 5688111 - 5688101 - T 73 -8.2 -4.09685 | opp_overlap 5688101 5688088 GGCCACGCCGTAAAA GCCG TTA CGGC TTGGTGCGTTCGAAC Rpal_5274 5689433 - 5688105 - | extracellular solute-binding protein family 1 TERM 4045 5691681 - 5691639 - gH 89 -12.7 -4.12188 | gap 1, overlap 5691612 TTATCATGCCGAAAA CCGCC-ACCGGTGGAACGGC ATCC GCCGCCCCACCCATCGACGG AAACCTGCAATGGCC Rpal_5275 5689640 - 5691721 + | integral membrane sensor signal transduction histidine kinase TERM 4046 5691801 - 5691771 - gf 72 -11.9 -3.29324 | gap 1, overlap 5691766 5691774 CGCACGGAAATGGAA GATCGCGGTGATCG ACGA CGA-CACCGCGGTC CACGACGGCACCCGC Rpal_5276 5691691 - 5693430 + | response regulator receiver sensor signal transduction histidine kinase Rpal_5277 5693427 - 5694167 + | two component transcriptional regulator, winged helix family TERM 4047 5694228 - 5694258 + F 84 -15.6 -3.27525 | overlap 5694223 CGCTTTTTCGTCCGA GTGTTTCGTCGC GGCTCTG GCGACGAAACAC TTCCATTTCGCCACG Rpal_5278 5694372 - 5694983 + | RNA polymerase, sigma-24 subunit, ECF subfamily TERM 4048 5695253 - 5695279 + F 100 -15.2 -4.36127 | opp_overlap 5695253 TAGGCCTCCAAGGGA CCCGGACGAG ATGCCCC CTCGTCCGGG TTTTCGCTTGTTCGA TERM 4049 5695279 - 5695253 - f 76 -15.9 -2.52676 | opp_overlap 5695253 TAGGCCTCCAAGGGA CCCGGACGAGA TGCCC CCTCGTCCGGG TTTTCGCTTGTTCGA Rpal_5279 5695490 - 5696896 + | cytochrome bd ubiquinol oxidase subunit I Rpal_5280 5696916 - 5697920 + | cytochrome d ubiquinol oxidase, subunit II Rpal_5281 5697917 - 5698048 + | hypothetical protein Rpal_5282 5698090 - 5698683 + | ErfK/YbiS/YcfS/YnhG family protein Rpal_5283 5698729 - 5699763 + | extracellular solute-binding protein family 3 Rpal_5284 5701301 - 5700162 - | acyl-CoA dehydrogenase domain protein Rpal_5285 5702653 - 5701469 - | acyl-CoA dehydrogenase domain protein Rpal_5286 5702818 - 5703363 + | Carboxymuconolactone decarboxylase Rpal_5287 5704635 - 5703418 - | major facilitator superfamily MFS_1 TERM 4050 5704111 - 5704081 - G 72 -13.2 -3.21416 | opp_overlap 5704086, overlap 5704083 CAGCGGCATCAGCAA CACCACCGCGGCGA TCG CCGCCGCCGTGGTT GCCCCGGTGAAACCG TERM 4051 5704109 - 5704083 - G 78 -15.8 -3.17051 | opp_overlap 5704086, overlap 5704081 GCGGCATCAGCAACA CCACCGCGGCGA TCG CCGCCGCCGTGG TTGCCCCGGTGAAAC Rpal_5288 5705968 - 5704721 - | major facilitator superfamily MFS_1 Rpal_5289 5706760 - 5706044 - | protein of unknown function DUF938 TERM 4052 5706429 - 5706388 - G 73 -12.9 -3.31726 | gap 1, overlap 5706386 CGTTGGCACAGAATA TCGCCAGCAGCGGCCCGGGC GCC GCCCGGTCGGCCGGTG-CGA CCGACCAGGCGGGAT TERM 4053 5708436 - 5708448 + G 75 -3.4 -4.79223 | CGAACTGCAGTCGGA GTTC ACCAA GAAC TTTTTCCTGGTCTCC Rpal_5290 5707204 - 5709225 + | TonB-dependent receptor plug TERM 4054 5709277 - 5709225 - f 75 -15 -2.77899 | gap 2, overlap 5709222 GCGCGTCACCAACTA GGATCG--CTCTGTTCCGCCGCCGTA GGC TTCGTCGGCGGAACAGAGCCCGATGC GACGTTGCGGCGAGC TERM 4055 5709354 - 5709324 - f 71 -13.3 -3.07005 | gap 1, opp_overlap 5709324, overlap 5709315 AACCAACGTCGAACA GCCTCCGAGC-GCC GAAA GGCTGTTCGGAGGC TTTTTTCGTGCTATC TERM 4056 5709324 - 5709354 + F 100 -15.5 -5.20216 | gap 1, opp_overlap 5709315 5709324 AACCAACGTCGAACA GCCTCCGAGC-GCC GAAA GGCTGTTCGGAGGC TTTTTTCGTGCTATC TERM 4057 5709524 - 5709503 - g 80 -15.9 -3.2963 | AGCAGTCCTCGACAA CATGGCGCG CCTG CGCGCCATG CGGCTCGCCCGTGAA Rpal_5291 5709408 - 5709695 + | hypothetical protein Rpal_5292 5709869 - 5710063 + | hypothetical protein Rpal_5294 5711582 - 5712802 + | putative ABC-type branched-chain amino acid transporter, periplasmic binding protein TERM 4058 5712829 - 5712861 + T 100 -17 -3.76492 | opp_overlap 5712829, overlap 5712835 CACCACGACCTCAAA CGCGCATGGCCGGG CTCGT CCCGGCCATTTGCG TTTGGTGGAGTTGAA TERM 4059 5712861 - 5712829 - T 85 -14.8 -3.62572 | opp_overlap 5712829 5712835 CACCACGACCTCAAA CGCGCATGGCCGGG CTCGT CCCGGCCATTTGCG TTTGGTGGAGTTGAA TERM 4060 5712835 - 5712855 + T 86 -14 -3.87149 | opp_overlap 5712829, overlap 5712829 GACCTCAAACGCGCA TGGCCGGG CTCGT CCCGGCCA TTTGCGTTTGGTGGA Rpal_5295 5714205 - 5712919 - | major facilitator superfamily MFS_1 Rpal_5296 5714478 - 5715131 + | ABC transporter related Rpal_5297 5715128 - 5717593 + | protein of unknown function DUF214 Rpal_5298 5717583 - 5718668 + | hypothetical protein Rpal_5299 5718735 - 5719127 + | membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) TERM 4061 5719363 - 5719339 - T 74 -10.6 -3.76952 | opp_overlap 5719338 CCTACTCAAGGCAAA GCCGGTGCCC TTGCG GAGCGCCGGC CTTCACTTCAGATGC Rpal_5300 5720584 - 5719391 - | putative periplasmic substrate binding protein Rpal_5301 5722355 - 5720670 - | hypothetical protein TERM 4062 5722355 - 5722403 + g 100 -24.1 -2.52464 | gap 1, opp_overlap 5722380 5722383 CAAGGATTCGACTCA TGGCATCGCACTCTGCTCGGCA CAACGA TGCCGAGCAGAGTGCGC-GCCA TGGATTAAAAAAGCG Rpal_5302 5724329 - 5722443 - | heat shock protein Hsp90 TERM 4063 5722766 - 5722788 + g 72 -13.4 -3.14344 | overlap 5722769 5722772 AGGCTTTGACGTCGG AGACGCGCTC ACC GAGCGCGTCC TTGATCACCGCGATC Rpal_5303 5725793 - 5724417 - | integral membrane sensor signal transduction histidine kinase TERM 4064 5725759 - 5725717 - G 78 -14.1 -3.57263 | gap 1, opp_overlap 5725740 ATGGTGAGCGCGAAA CCGGCGACGCTGAGCGCGAT CAGG ATCGC-CGCGGCACCGCCGG CGATCAACCGCAGCC Rpal_5304 5726455 - 5725790 - | two component transcriptional regulator, winged helix family Rpal_5305 5726793 - 5726455 - | Propeptide PepSY amd peptidase M4 Rpal_5306 5727199 - 5726891 - | hypothetical protein TERM 4065 5727062 - 5727047 - G 74 -2.4 -4.72986 | overlap 5727049 CAGCGCCATCAAAAA CAGGCC AAGC GGACCG ACTTTGCCGACAAAG Rpal_5307 5728507 - 5727383 - | translation initiation factor, aIF-2BI family Rpal_5308 5729557 - 5728682 - | methylthioadenosine phosphorylase Rpal_5309 5729840 - 5730979 + | iron-containing alcohol dehydrogenase Rpal_5310 5731145 - 5732695 + | AMP-dependent synthetase and ligase Rpal_5311 5733114 - 5732740 - | Ethyl tert-butyl ether degradation EthD Rpal_5312 5733186 - 5733539 + | transcriptional regulator, MerR family Rpal_5313 5733615 - 5735465 + | ATP-dependent DNA helicase RecQ TERM 4066 5735719 - 5735691 - g 71 -9.4 -3.77607 | opp_overlap 5735690 5735691, overlap 5735692 AAGAACGTGATGAAA GCCGCGCGCGCC CAGGC GGCGCGCGAAGG ACATTTGTCGAATTT Rpal_5314 5735532 - 5735759 + | regulatory protein, FmdB family Rpal_5315 5736061 - 5735783 - | hypothetical protein TERM 4067 5736320 - 5736305 - H 70 -7.5 -3.97139 | GAACGCCAACAACAA CGCGC CAGCAC GCGCG GGACAAGGGGAGGAC Rpal_5316 5736341 - 5737927 + | AMP-dependent synthetase and ligase Rpal_5317 5739138 - 5738035 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 4068 5739101 - 5739089 - G 85 -10.5 -4.25056 | opp_overlap 5739078, overlap 5739040 GACGCCAGCAACAAA CGCCG GCG CGGCG CAGGGTTGGACGCAG Rpal_5318 5739356 - 5739724 + | hypothetical protein TERM 4069 5740098 - 5740124 + G 71 -3 -4.66537 | gap 2, overlap 5740081 ATCGACGCGGTGCAG GCCG-TGG-GCC CGGTC GGCATCATCGGC TTTTGTCTTGGCGGC Rpal_5319 5739780 - 5740451 + | Carboxymethylenebutenolidase Rpal_5320 5741119 - 5740478 - | polysaccharide export protein TERM 4070 5740768 - 5740751 - G 71 -9.1 -3.85698 | gap 1, opp_overlap 5740752, overlap 5740715 5740736 5740752 GGGCTCGCGGATAAA GCCGCGGC GCA GCCGCG-C GGTGATCTCGGCGGC Rpal_5321 5741910 - 5741254 - | peptide methionine sulfoxide reductase Rpal_5322 5742395 - 5742078 - | hypothetical protein Rpal_5323 5742761 - 5743027 + | ribosomal protein S20