TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.338679 %AT, 3796649 nt, 44854 terms. Intergenic: 0.393074 %AT, H2T: 366100 nt, 4528 terms; T2T: 121836 nt, 2619 terms; H2H: 159143 nt, 3360 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|83582730|ref|NC_007641.1| Rhodospirillum rubrum ATCC 11170 plasmid unnamed, complete sequence (length 53732) TERM 1 308 - 297 - g 77 -3.6 -4.72272 | overlap 277 281 GCGGGGTAGGAAAAA CCAC CCTC GCGG TTAATCTCGCCGTGG Rru_B0001 254 - 904 + | putative partition protein Rru_B0002 976 - 1224 + | hypothetical protein TERM 2 1288 - 1277 - f 85 -3 -5.4505 | opp_overlap 1277 TCCCTCAAGAAAAAA TTCA CCTT TGAA TTTATGGGACGAAAA TERM 3 1327 - 1305 - g 85 -7.8 -4.7373 | TTATGGGACGAAAAA GTGATAAGAA TTC TTCTTCTCAC TAAATATGATGAAAC TERM 4 2266 - 2246 - g 79 -3.2 -5.02074 | overlap 2247 2249 CGATTGCCTAAAAAA CGATCTCG GTCAA CGAGAGCA AATGGGACTTTTAGC Rru_B0003 1305 - 2369 + | glycosyl transferase, group 1 Rru_B0004 3008 - 2379 - | hypothetical protein TERM 5 2661 - 2638 - G 81 -7.5 -4.65895 | gap 1 GCCTGGAGGCAAAAA GGCGATGGCT GAATG AG-CATCGCC TCCTCGTCCATTCCT TERM 6 2868 - 2854 - G 71 -2.8 -4.66953 | overlap 2845 GGAAGAGCGGAAAAA TCCG TATAGAT CGGA GGGCTCTCCTCCTCC Rru_B0005 5189 - 3063 - | glycosyl transferase TERM 7 4053 - 4042 - G 76 -2.2 -4.91109 | CCGTTATGAGAAAAA CGCT CCGA AACG CGGCTTAAGCGGGAA TERM 8 4088 - 4074 - G 77 -7 -4.43877 | opp_overlap 4074 4077, overlap 4070 4075 TAAGCGGGAAAGAAA GGCCGG AAG CCGTCC TTCCGTCGTTACCTG Rru_B0006 6218 - 5259 - | NAD-dependent epimerase/dehydratase TERM 9 5673 - 5661 - G 86 -6.2 -5.06414 | opp_overlap 5663 5668, overlap 5663 GGCTTTGAACAAAAA GGCG CTCGC CGCC CCCTGCTGCTTTCGG Rru_B0007 9935 - 6225 - | glycosyl transferase, group 1 TERM 10 6599 - 6623 + g 74 -2.1 -4.77173 | gap 1, opp_overlap 6599 CAGGGTTTCTGATAA GC-GCCGATA CCGCTA TAGCGGCCGC TTTCTTTTCTCCACC TERM 11 7276 - 7260 - G 77 -5.1 -4.57569 | CGATGGCGTCAAAAA GCTCGCT TTG AACAAGC CGCTGGCAGAGATCT TERM 12 9351 - 9325 - G 83 -9.4 -4.37711 | opp_overlap 9333, overlap 9328 9334 TGATCAAATTCAAAA GATGGAAACCGC TCG GCGATTTCCGCC CAAAACCGCCAAACT TERM 13 10641 - 10596 - g 72 -8.2 -4.07568 | gap 1, overlap 10598 10628 CGGGCTGCTGGAAAA GAGCGCCGATGCCGATCTGCT GCGCG AGATGATCGGCTTCGCCGC-C GAGCGGCTGATGGCG TERM 14 10640 - 10598 - g 75 -11.9 -3.63744 | overlap 10596 10628 GGCTGCTGGAAAAGA GCGCCGATGCCGATCTGCT GCGCG AGATGATCGGCTTCGCCGC CGAGCGGCTGATGGC Rru_B0008 10555 - 10806 + | putative fragment of transposase protein Rru_B0009 10834 - 11760 + | transposase TERM 15 12490 - 12472 - T 100 -8.8 -5.28315 | AGAAAACCGAAAAAA TCGTACGC TAA GCGTGCGA GGAGGCTGGCACCCA Rru_B0010 13036 - 12479 - | resolvase Rru_B0011 13348 - 13049 - | hypothetical protein Rru_B0012 13675 - 13409 - | DNA polymerase, beta-like region Rru_B0013 13859 - 14095 + | hypothetical protein Rru_B0014 15022 - 14096 - | transposase Rru_B0015 15301 - 15050 - | putative fragment of transposase protein TERM 16 15215 - 15260 + g 72 -8.2 -4.07568 | gap 1, overlap 15213 15216 CGCCATCAGCCGCTC G-GCGGCGAAGCCGATCATCT CGCGC AGCAGATCGGCATCGGCGCTC TTTTCCAGCAGCCCG TERM 17 15216 - 15258 + g 75 -11.9 -3.63744 | overlap 15213 15215 GCCATCAGCCGCTCG GCGGCGAAGCCGATCATCT CGCGC AGCAGATCGGCATCGGCGC TCTTTTCCAGCAGCC TERM 18 15714 - 15704 - g 72 -4.6 -4.56597 | opp_overlap 15705, overlap 15705 15706 GCGCCGCCGCAAAAA CGGG CTG CCCA GCACCCATCCTCTGC Rru_B0016 15468 - 16091 + | Phage integrase Rru_B0017 16441 - 17346 + | LysR family transcriptional regulator Rru_B0018 17434 - 18111 + | hypothetical protein Rru_B0019 18229 - 18918 + | O-methyltransferase family protein Rru_B0020 18918 - 20465 + | major facilitator transporter TERM 19 20752 - 20773 + T 78 -5.2 -4.7268 | gap 1, overlap 20758 20763 GGATTATGTGAGACG CGGTTCGTT CGGAA AACGA-CCG TTTTCTTGACTGTTT Rru_B0021 21272 - 21078 - | DNA-binding protein Fis Rru_B0022 21717 - 21316 - | resolvase-like protein Rru_B0023 21900 - 22385 + | hypothetical protein TERM 20 22493 - 22513 + T 71 -5.4 -4.33053 | CAGCAAGAAGGCTCC TGCGGCTT CGGTA AAGCCCCA TCTTTTTTGATTTCT Rru_B0024 23734 - 22802 - | RepA-related protein TERM 21 23823 - 23874 + r 83 -2.3 -5.18355 | gap 2, opp_overlap 23832 23833 23836, overlap 23824 CCTGCAGACCGGCTT TTAAGTAAAGTGAGG--GCGGGACG TGAG CGTCCCGCATCCTCGATAGGCTTAG TTTTTGCTTTTTAGC Rru_B0025 24122 - 23871 - | hypothetical protein Rru_B0026 24461 - 25255 + | SapC TERM 22 25898 - 25914 + G 74 -2.1 -4.75309 | overlap 25891 25901 CCTTCATCCAGGGAT TCTGTGG CTT CCCCTGA TTTTGTTGCCTTTCG TERM 23 26121 - 26133 + G 90 -3.3 -5.43621 | opp_overlap 26097 26122, overlap 26122 TTCGTTATCGAACAA TCGCG GGC CGTGG TTTTTTATGGTTTGT Rru_B0027 25539 - 26258 + | hypothetical protein TERM 24 27303 - 27315 + G 75 -3.3 -4.72272 | overlap 27304 CGATGAGTTGCGCAG TCCGA TCA TCGGC TTTTTCGTGAAGGAC Rru_B0028 26248 - 27666 + | ABC transporter related Rru_B0029 28666 - 27680 - | plasmid encoded RepA protein TERM 25 28986 - 28942 - R 93 -17.1 -3.29461 | opp_overlap 28942 CAATTCTGTGGATAA CTTTTCCCGACTCGGAGTCCC CCC GCGACTCCGAGTCGGGCGACG TTCTAGCCGAGGACG TERM 26 28942 - 28986 + r 95 -19.3 -3.28712 | opp_overlap 28942 CAATTCTGTGGATAA CTTTTCCCGACTCGGAGTCCC CCC GCGACTCCGAGTCGGGCGACG TTCTAGCCGAGGACG TERM 27 29013 - 29037 + r 73 -10 -3.61398 | gap 1, opp_overlap 29004 29005 GACGAAGTCTCCGAT CGCCGGA-TCG ACGG CGGCTCCGGCG TTCTTGAGAACCCCG Rru_B0030 30377 - 28989 - | hemolysin-type calcium-binding region Rru_B0031 31993 - 30461 - | hypothetical protein TERM 28 31279 - 31221 - G 71 -13.9 -2.82193 | ACGACATCGATCAGA TCGGTGACATGGGCCGA-GGCGGCGAAGC TCA GCTTGGCCGCCGTCAGCTCACG-CACCAC ATCGGCGTGATAAAG TERM 29 31921 - 31910 - G 77 -7.2 -4.57353 | GCTGAGCAGACAAAA GCGC AGAT GCGC CGGTGTCAGCTCGCG Rru_B0032 32378 - 32076 - | hypothetical protein TERM 30 32464 - 32478 + r 71 -5.6 -4.34771 | opp_overlap 32465, overlap 32465 32465 CCCTCTTTCTTTAAA AGGGGT CAG ACCCCG TTTTACTCCGTTTTA TERM 31 32477 - 32465 - R 76 -9.1 -4.07568 | opp_overlap 32465 32464 32465 CCTCTTTCTTTAAAA GGGGT CAG ACCCC GTTTTACTCCGTTTT Rru_B0033 33188 - 32481 - | hypothetical protein TERM 32 33225 - 33237 + H 79 -9.1 -4.20696 | opp_overlap 33225 33220 TCGGTCAAAAGAGAA GGGGT CTG ACCCC TTTTAAGCTTAGTGG TERM 33 33237 - 33225 - H 73 -9.1 -3.95435 | opp_overlap 33225, overlap 33220 TCGGTCAAAAGAGAA GGGGT CTG ACCCC TTTTAAGCTTAGTGG Rru_B0034 33307 - 33534 + | hypothetical protein TERM 34 33762 - 33780 + G 72 -4.5 -4.50058 | gap 1, opp_overlap 33760 33756, overlap 33756 33764 GGCAACAAGCGAACG GCCTGGGT GGTC GCCC-GGC TTTTCCTTGTCGATA Rru_B0035 33531 - 33917 + | death-on-curing protein TERM 35 33941 - 33955 + T 71 -5.6 -4.30231 | opp_overlap 33942, overlap 33937 CTTATAAAGCTTAAA AGGGGT CAG ACCCCG TTTATCTTGGTTGTT TERM 36 33954 - 33942 - T 79 -9.1 -4.26189 | opp_overlap 33941 33937 TTATAAAGCTTAAAA GGGGT CAG ACCCC GTTTATCTTGGTTGT Rru_B0036 35112 - 33946 - | hypothetical protein TERM 37 35248 - 35260 + r 80 -3.3 -5.12971 | opp_overlap 35242 35249, overlap 35242 35238 35249 TTCATCGAATAAAAA AGGGT CAG ACCCC TTTTTATTCCCTCTT TERM 38 35259 - 35249 - R 95 -6.8 -5.4833 | opp_overlap 35248 35242 35238 35249, overlap 35242 TCATCGAATAAAAAA GGGT CAG ACCC CTTTTTATTCCCTCT TERM 39 35318 - 35289 - R 100 -20.9 -4.91109 | opp_overlap 35289 TTTCTATCATAAAAA TGGCAGGAGGTCT GTAT AGACCTCCTGCCA TTTTAAGAAAGTGGT TERM 40 35289 - 35318 + r 100 -20.9 -4.08945 | opp_overlap 35289 TTTCTATCATAAAAA TGGCAGGAGGTCT GTAT AGACCTCCTGCCA TTTTAAGAAAGTGGT Rru_B0037 37865 - 35373 - | hemolysin-type calcium-binding region TERM 41 38182 - 38240 + H 100 -21.3 -3.54195 | gap 1, opp_overlap 38184, overlap 38183 38184 38189 38194 AGCCGGCCGGATAAA -AAGGGGATAAAAGGGGTCTGACCCC TTAAATTT GGGGTCTGACCCCTTTTATCCCCCTG TCTTGCTTTTTATTG TERM 42 38183 - 38238 + H 100 -26.4 -3.31361 | opp_overlap 38184, overlap 38182 38184 38189 38194 GCCGGCCGGATAAAA AGGGGATAAAAGGGGTCTGACCCC TTAAATTT GGGGTCTGACCCCTTTTATCCCCC TGTCTTGCTTTTTAT TERM 43 38184 - 38237 + H 100 -29.9 -2.5719 | opp_overlap 38184, overlap 38183 38182 38189 38194 CCGGCCGGATAAAAA GGGGATAAAAGGGGTCTGACCCC TTAAATTT GGGGTCTGACCCCTTTTATCCCC CTGTCTTGCTTTTTA TERM 44 38237 - 38184 - H 100 -29.9 -4.82901 | opp_overlap 38184 38183 38182 38189 38194 CCGGCCGGATAAAAA GGGGATAAAAGGGGTCTGACCCC TTAAATTT GGGGTCTGACCCCTTTTATCCCC CTGTCTTGCTTTTTA TERM 45 38194 - 38227 + H 100 -15.3 -4.39426 | opp_overlap 38184, overlap 38189 38184 38183 38182 AAAAAGGGGATAAAA GGGGTCTGACCCC TTAAATTT GGGGTCTGACCCC TTTTATCCCCCTGTC Rru_B0038 38320 - 38886 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 46 39104 - 39047 - g 93 -11.1 -4.35926 | opp_overlap 39059 39060 39100, overlap 39080 ACCGCAAAGCCAAAA GGTCGTCACCGAACTGCAGGAGGCCTT GAAA AAGGCCCGCGGCGGCTTCGTGTCGACC ATGGCGTTCAGTTTC TERM 47 39090 - 39080 - g 70 -2.4 -4.57569 | opp_overlap 39060 39059, overlap 39047 GGAGGCCTTGAAAAA GGCC CGC GGCG GCTTCGTGTCGACCA TERM 48 39442 - 39462 + G 73 -13.9 -3.15574 | overlap 39440 39450 GGCTGATCGTGTTTT GCGACGCCC CCT GGGCGCCGC TGTTCATCGCCTTGG Rru_B0039 39009 - 40766 + | Type I secretion system ATPase, PrtD Rru_B0040 40773 - 42251 + | Type I secretion membrane fusion protein, HlyD TERM 49 42337 - 42352 + F 74 -11.8 -3.53012 | ATCCTAGTAATCTTG GGGCGC TCCG GCGCCC TTTCCCCCAAAAAAG Rru_B0041 42399 - 42710 + | XRE family transcriptional regulator TERM 50 43451 - 43434 - g 90 -2.5 -5.40072 | overlap 43435 CCTGGCCGAAAAAAA CCGCCGC CCCT GCCGCGC CGCCCAGCCAGGATC Rru_B0042 42745 - 43599 + | hypothetical protein Rru_B0043 43703 - 44356 + | hypothetical protein TERM 51 44506 - 44492 - g 75 -11.4 -3.72695 | AGGGGCTGGAGGAAA CCAGGC TGT GCCTGG AGAGCGTTCTGGCGA TERM 52 44759 - 44799 + G 72 -8.2 -4.13767 | gap 1, overlap 44760 TGGCGCGGCTGCGCG CGGCG-GCCTATGCCGATC GGCG GATCGGCACGGTCACGCCC TTTTCCAATAACGCG Rru_B0044 44416 - 46656 + | glycosyl transferase family protein TERM 53 47440 - 47388 - g 76 -14.7 -3.09492 | overlap 47407 47408 47409 GGTTCAACTGCAAGA GGCCGTCGCCAGCGAAAAAGCCGCC CTT GGCATCGCCTTCGACGGCGACGGCG ACCGCCTGGGCGTGG TERM 54 47442 - 47407 - g 81 -7.4 -4.65895 | overlap 47388 47408 47409 GTCGCCAGCGAAAAA GCCGCCCTTGGCATCG CCTT CGACGGCGACGGCGAC CGCCTGGGCGTGGTC Rru_B0045 46714 - 48117 + | phosphomannomutase TERM 55 48565 - 48589 + G 73 -14.2 -3.18681 | opp_overlap 48563 48564 CGCCATTGATCAAGC GGCGCCGGCG GCGCG CGCCGGAGCC TTGGTGACCTTCGGG TERM 56 48959 - 48948 - g 87 -7.2 -5.08824 | opp_overlap 48948 CCGTCATGGAAAAAA CGGC CAAT GCCG CCGTCTTTCCCGTCG Rru_B0046 48155 - 49639 + | mannose-1-phosphate guanylyltransferase (GDP) TERM 57 50549 - 50559 + G 83 -4.6 -5.00884 | CGAAAAATTGTCGTC GTCG ATC CGGC TTTTTTCCGCCCCAT TERM 58 50644 - 50609 - g 91 -9.7 -4.82901 | opp_overlap 50609, overlap 50640 GGGGTCGCAGAAAAA GCCCATTCCGTGCTG GGATGG CGGCAAAGAATGGGC TTTGAAGATCTCATT Rru_B0047 49682 - 50716 + | NAD-dependent epimerase/dehydratase Rru_B0048 51597 - 50713 - | glucose-1-phosphate thymidylyltransferase TERM 59 50956 - 50972 + g 100 -6.5 -5.80951 | opp_overlap 50934, overlap 50958 GAAGCCTCTTCCCAT GACTTCG ACG CGAAGGC TTTTTTCTTTTAGAT Rru_B0049 52526 - 51594 - | dTDP-4-dehydrorhamnose reductase TERM 60 51764 - 51782 + g 74 -10.2 -3.81146 | CCGTTGTGATCGGCA GGACGACG GGC CGTCGCCC TTCTTGCTTGGCCAG Rru_B0050 53584 - 52529 - | dTDP-glucose 4,6-dehydratase SEQUENCE gi|83591340|ref|NC_007643.1| Rhodospirillum rubrum ATCC 11170, complete genome (length 4352825) TERM 1 1539 - 1584 + G 70 -13.2 -3.05022 | gap 2 CTCGCCGATATGCAT TCGGC-CC-GCCGCGCCCGGGC GGTG GCCCGGCCCCGGCAGGTGGCGA TGTATCTCTGCAAGC dnaA 228 - 1757 + | chromosomal replication initiation protein Rru_A0002 1992 - 3110 + | DNA polymerase III subunit beta TERM 2 3588 - 3613 + G 74 -7.4 -4.17556 | overlap 3593 TGGACGGGTTGTTTC GCGGCGGGGC GAGCGA GCGCCGGCGC TTTCTTGACCGTCTG TERM 3 3805 - 3841 + G 95 -18.6 -3.53012 | overlap 3823 CCGCGATCTGGTCGA CCGCCTGGGGGCGGCG GTGCG CGCCGCCACCGGGCCG TTTCCCGGGGCGCGG recF 3170 - 4297 + | recombination protein F TERM 4 5006 - 4988 - g 75 -13.1 -3.35679 | GCTGTTGACCGACAA GCGCGGC ACCGA GCCGCGC ACCACCAAATTCCAC TERM 5 6774 - 6740 - g 85 -15.8 -3.68988 | opp_overlap 6749, overlap 6741 CTTTATCCAAGACAA CGCCCTGAACGTCCAG AAC CTGGACGTTTAAGGCA AATCCCGAGCGATCT TERM 6 6773 - 6741 - g 82 -17.1 -2.81072 | opp_overlap 6749, overlap 6740 TTTATCCAAGACAAC GCCCTGAACGTCCAG AAC CTGGACGTTTAAGGC AAATCCCGAGCGATC gyrB 4362 - 6770 + | DNA gyrase subunit B TERM 7 6749 - 6765 + F 79 -12.3 -3.53811 | opp_overlap 6741 6740 AGACAACGCCCTGAA CGTCCAG AAC CTGGACG TTTAAGGCAAATCCC TERM 8 6875 - 6828 - f 89 -17.2 -3.13403 | gap 1, overlap 6826 GCTTCGCGATCAAGA TCTTAGAGCGGTGTGCGGGGA CCATATT TCCCC-CACACCGCCCTAAGG GGACGCCCCCGCCCC TERM 9 6903 - 6938 + F 100 -19.8 -3.53091 | opp_overlap 6908, overlap 6908 CCCCTCCTGCCGACT AAAAACCCCCGCTGGC GCAA GCCGGCGGGGGTTTTG TTTGGGAAAAACCGT TERM 10 6933 - 6908 - f 100 -17.5 -4.72272 | opp_overlap 6908 6903 CCTGCCGACTAAAAA CCCCCGCTGGC GCAA GCCGGCGGGGG TTTTGTTTGGGAAAA TERM 11 6908 - 6933 + F 100 -19.7 -4.86731 | opp_overlap 6908, overlap 6903 CCTGCCGACTAAAAA CCCCCGCTGGC GCAA GCCGGCGGGGG TTTTGTTTGGGAAAA Rru_A0005 7184 - 7528 + | killer suppression protein HigA, putative TERM 12 8392 - 8376 - g 83 -3.5 -5.15117 | GAAAAGCTGAAAAAA GGGGAGG CGC CGACCCC GGAAAGCGCCCAGCG Rru_A0006 7515 - 8657 + | plasmid maintenance system antidote protein TERM 13 8714 - 8749 + T 100 -22 -3.54741 | opp_overlap 8719, overlap 8719 TAAACTCCCCCCACA GAAAACCCCCGCTGGC GCAA GCCAGCGGGGGTTTTG TTTGGCCGGGTCCTC TERM 14 8719 - 8744 + T 100 -21.9 -4.86731 | opp_overlap 8719, overlap 8714 TCCCCCCACAGAAAA CCCCCGCTGGC GCAA GCCAGCGGGGG TTTTGTTTGGCCGGG TERM 15 8744 - 8719 - T 100 -21.9 -4.52589 | opp_overlap 8719 8714 TCCCCCCACAGAAAA CCCCCGCTGGC GCAA GCCAGCGGGGG TTTTGTTTGGCCGGG Rru_A0007 9104 - 8763 - | hypothetical protein TERM 16 9119 - 9094 - G 70 -4.1 -4.45765 | gap 1, opp_overlap 9101, overlap 9090 GGCAAAAGGAATAAA GACTTT-CGC ATCTATG GCGGAAAGTC TCTAGATGCTTTTTT TERM 17 9101 - 9128 + g 79 -2 -5.00884 | opp_overlap 9094 9090 GGAATAAAGACTTTC GCATCTATGG CGGAAAGT CTCTAGATGC TTTTTTCACCCGGCT Rru_A0008 9414 - 9208 - | hypothetical protein TERM 18 9436 - 9448 + r 81 -4.8 -4.9645 | TCTCTTTCCCGTCTA GGTC GTAAA GACC TTTTGTTCTTCTGCT TERM 19 9530 - 9516 - R 81 -5.6 -4.74103 | overlap 9524 TCCTTAAGTTAAAAA GACCCA AAT CGGGCC CCCAAACGACCGAAG TERM 20 9578 - 9540 - R 81 -16.1 -2.90496 | gap 1, opp_overlap 9545, overlap 9537 9545 9566 9567 CGGGCCCCCAAACGA CCGAAGGGCGCCGCTTCC GACA AGAAG-GGCGCCCTTTGG GGATCTGTTGGGCCC TERM 21 9545 - 9573 + r 82 -12.5 -3.60948 | gap 1, opp_overlap 9540 9537 9545 9566 9567 CCCCAAACGACCGAA GGGCGCCGCTTC CGACAA GAAG-GGCGCCC TTTGGGGATCTGTTG TERM 22 9573 - 9545 - R 78 -13.2 -3.1634 | gap 1, opp_overlap 9545, overlap 9540 9537 9566 9567 CCCCAAACGACCGAA GGGCGCCGCTTCC GACA AGAAG-GGCGCCC TTTGGGGATCTGTTG Rru_A0009 10137 - 9673 - | PTS IIA-like nitrogen-regulatory protein PtsN TERM 23 10062 - 10072 + g 84 -6.8 -4.72272 | overlap 10054 GCTTCGCCAGTTCCT GCAG GGC CTGC TTTTTGCTGGACACG Rru_A0010 12029 - 10527 - | RNA polymerase factor sigma-54 TERM 24 11339 - 11281 - G 75 -15.3 -2.80307 | gap 1, opp_overlap 11307 CAAATCTTGAGCAGA CCGGCGATA-TCGCGCCGCCCGAGCATC TCGA GATGGTCAAGCAGCGCCTGCATCGCCGG GTCGAGTCGGTTGAG Rru_A0011 12913 - 12047 - | ABC transporter component TERM 25 12710 - 12725 + g 78 -6 -4.60924 | overlap 12723 CGACAGGCTGACATC GCGCAG CACC CGGCGC TTTTTGAAGCGTTTG Rru_A0012 13881 - 12910 - | hypothetical protein TERM 26 13217 - 13242 + g 82 -12.5 -3.9941 | gap 1, overlap 13218 13226 ATATTCGATCCCTCG GCCGGCGC-GGC CAA GCCGGCGCCGGA TTTGCTTGTCGCGGG TERM 27 13218 - 13241 + g 77 -16 -2.99325 | gap 1, overlap 13217 13226 TATTCGATCCCTCGG CCGGCGC-GGC CAA GCCGGCGCCGG ATTTGCTTGTCGCGG Rru_A0013 14702 - 13878 - | hypothetical protein Rru_A0014 15799 - 14699 - | KpsF/GutQ TERM 28 15451 - 15501 + g 78 -10.2 -4.11216 | opp_overlap 15443 15446 GGACGAAGAACGACG GCGTTCCGGTCGAGGCCAGGGTGG CGG CGATCTTGGCCGCGACATGGCCGC TTTTGCCCATGCCCG Rru_A0015 16852 - 16232 - | 3'-5' exonuclease TERM 29 16999 - 16946 - H 95 -12.5 -4.14392 | gap 3, opp_overlap 16994, overlap 16947 CGCCAACCGCCAAAA CGCGTCGC-GCCGCC-GCCGGATCCC TTGGG GGGATCCGGCCGTCGGCGGCTA-ACG ATACGGTAGTGTGAT TERM 30 17000 - 16947 - H 72 -12.5 -3.08314 | gap 3, opp_overlap 16994, overlap 16946 GCCAACCGCCAAAAC GCGTC-GC-GCCGCC-GCCGGATCCC TTGGG GGGATCCGGCCGTCGGCGGCTAACGA TACGGTAGTGTGATT Rru_A0016 17356 - 18378 + | 3-beta-hydroxy-delta(5)-steroid dehydrogenase TERM 31 18410 - 18427 + T 75 -8.3 -4.18018 | ACCGGCCGCTCCATT GCGGCGC CTCC GCTCCGC TTTTGCCTGAGCAGA Rru_A0017 19341 - 18493 - | undecaprenyl-diphosphatase TERM 32 18696 - 18646 - G 100 -13.3 -4.58283 | gap 2, overlap 18634 18648 GAAGGCCGCCAAAAA GGCCGTCACGGCGGCGATCAGCGCC GCC GGCGCC-ATCGCCGAC-TGACCGAC GCGAGCCAGATCAAG TERM 33 18694 - 18648 - G 71 -14.5 -2.60211 | gap 2, overlap 18634 18646 AGGCCGCCAAAAAGG CCGTCACGGCGGCGATCAGCGCC GCC GGCGCC-ATCGCCGAC-TGACCG ACGCGAGCCAGATCA TERM 34 19040 - 19029 - G 72 -5.8 -4.30576 | GGGCCAGCAGCAAAA CCGT GGCG ACGG CGGGCAGGGTGCCCA TERM 35 19168 - 19155 - G 84 -9.5 -4.55295 | CGCGCCAGAAATAAA GGGCG ACGG CGCCC AGGGTCCCCAGGTGG TERM 36 20435 - 20389 - g 72 -13.7 -3.04322 | gap 2 CGGAATTGCGCAAGA CCCACGACGCCGTGCTGATCGCC ACC GGCG-TCTACAAGGCG-CGCGGG CTGTCGATCCCCGGG Rru_A0018 19695 - 21152 + | putative oxidoreductase Rru_A0019 21176 - 25750 + | glutamate synthase (NADPH) large subunit TERM 37 25778 - 25810 + T 86 -18.5 -2.71011 | gap 1, opp_overlap 25764 ATCGCCGCCTTTCAA C-CCGGCCCGCCTC CTTCCC GAGGCGGGCCGGCG TCGTTCAGAGCAAAT Rru_A0020 26355 - 25849 - | glutathione peroxidase Rru_A0021 26888 - 26352 - | MarR family transcriptional regulator Rru_A0022 27098 - 27766 + | glutathione S-transferase-like protein Rru_A0023 27937 - 28329 + | hypothetical protein TERM 38 29375 - 29390 + G 70 -11.8 -3.40403 | opp_overlap 29364 29365 GAAAGCCTGGGCCTG CCCCGG GCGG CCGGGG TTATCATCGCCGCGG TERM 39 29449 - 29432 - g 71 -3.3 -4.58395 | gap 1, overlap 29434 TCGACCGCCGAAAAA GTCGG-GC TGC GCACCGGC GATGTGATCTTGGCG Rru_A0024 28454 - 29599 + | peptidase TERM 40 29648 - 29691 + F 73 -10.3 -3.61268 | gap 1, overlap 29654 29661 29689 CTTAAGATAGGGCCT CCGAAGGGGGAGCGGCCGGG GTTTG CCCAGCC-CTTTTCCTTTGG TTTGGCCATTCCCTC TERM 41 29661 - 29680 + F 73 -4.8 -4.64464 | overlap 29654 29648 CTCCGAAGGGGGAGC GGCCGGGG TTTG CCCAGCCC TTTTCCTTTGGTTTG TERM 42 29806 - 29824 + G 73 -12.4 -3.35679 | CATCGCATCCTGGCC CTGTCGCG CAG CGCGACGG TTCTCGATCGCCAGG TERM 43 30196 - 30184 - g 79 -4.7 -4.77036 | opp_overlap 30184, overlap 30185 CTGCACCAGCAAAAA GCCGC CGA GCGGA TCTTGAACGAGATTA Rru_A0025 29722 - 30261 + | hypothetical protein TERM 44 31574 - 31584 + G 72 -8.2 -4.14739 | opp_overlap 31537 31538, overlap 31572 GGATTTGCGCACCGT CGCC GGC GGCG TTTTCGAATCGCTCC Rru_A0026 30276 - 31619 + | hypothetical protein Rru_A0027 31626 - 32333 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 45 32509 - 32522 + T 95 -2.4 -5.64873 | opp_overlap 32509 GGTCCACCGGACAAA GGAA ATGATG TTCC TTTTTTGTTCTTAAG Rru_A0028 33752 - 32913 - | Beta-lactamase-like TERM 46 33457 - 33496 + g 85 -7.8 -4.72272 | gap 1, opp_overlap 33450, overlap 33458 GTCACCAAGATCGTG TCAATC-GCGGCAGGCTGG ATG CCAGCGAGCAGCAGATTGG TTTTTAATCGACCGC TERM 47 33698 - 33723 + g 70 -6.1 -4.18197 | opp_overlap 33687 33716, overlap 33689 33691 33700 GAGAGCCGTCGCTGA CTGCGGTGATT GTTA AATCACCGACG TTTTGGGTGGGAAAT Rru_A0029 34099 - 33773 - | hypothetical protein Rru_A0030 34651 - 34106 - | hypothetical protein Rru_A0031 34821 - 35720 + | LysR family transcriptional regulator Rru_A0032 37271 - 35787 - | TPR repeat-containing protein TERM 48 35990 - 36008 + g 72 -11.6 -3.53012 | opp_overlap 35987, overlap 35996 TCAGGGTGAAGACCG CCGGCGGC GGC GGCGCCGG TTTGGCCGGCGAGGG TERM 49 35996 - 36026 + g 74 -10.2 -3.83026 | opp_overlap 35987, overlap 35990 TGAAGACCGCCGGCG GCGGCGGCGCCGGT TTG GCCGGCGAGGGCGC TTTGGTCTGGGCGCC Rru_A0033 37780 - 37268 - | cytochrome C biogenesis protein Rru_A0034 38364 - 37777 - | periplasmic protein thiol-disulfide oxidoreductase DsbE TERM 50 38252 - 38232 - G 72 -8.3 -4.13767 | GCTGCGAGGGCAAAA GTCTGGG ATCATTG CCCAGAC CGAACAGGAACAGCC Rru_A0035 40405 - 38390 - | cytochrome c-type biogenesis protein CcmF TERM 51 38989 - 38975 - G 73 -4.2 -4.62471 | GGGAATGCGCAAAAA GCGGAT CCG ATCGGC CAGTTCGACCAGGGT TERM 52 40024 - 40001 - G 79 -3.8 -4.89233 | gap 1, overlap 39992 GATGAACAGCAAAAA GCCGCAGGTGA TCA TCGCCTG-GAC CGACAGGGTGCGGGC Rru_A0036 40952 - 40491 - | cytochrome c-type biogenesis protein CcmE Rru_A0037 41228 - 41073 - | Heme exporter protein D (CcmD) TERM 53 41252 - 41240 - R 71 -7.7 -4.12188 | CCATGACCTTCAAAA CCCTT TCC AAGGG CGGCTCAGCCGCCGG Rru_A0038 41976 - 41257 - | cytochrome c-type biogenesis protein CcmC TERM 54 41300 - 41312 + g 70 -10.5 -3.64703 | GCCCGCACCTTGGCG GCGGC GAT GCCGC TTTCCATACGAAGCA TERM 55 41371 - 41349 - G 72 -5.4 -4.41348 | CGGTGGCGAAATAAA GCTGGAAGGC GAC GCCCATCAGC AAAAGCGGCCACAAG TERM 56 42034 - 42054 + r 78 -6.7 -4.58466 | overlap 42036 GGCCGGGGTGGTTTC CACCCCGCG CCC CGCTGGGTC TTTTGTCCTTATGGG TERM 57 42036 - 42052 + r 73 -9.3 -3.89837 | overlap 42034 CCGGGGTGGTTTCCA CCCCGCG CCC CGCTGGG TCTTTTGTCCTTATG Rru_A0039 42810 - 42142 - | cytochrome c-type biogenesis protein CcmB TERM 58 42750 - 42727 - G 79 -4.4 -4.77036 | overlap 42703 GGTGACGACGAAAAA GGCCACCACC ATCA GGCTGTCGCC GCCCTGGCGCAGGGC Rru_A0040 43508 - 42807 - | cytochrome c biogenesis protein CcmA TERM 59 43341 - 43328 - G 70 -5.9 -4.20696 | overlap 43320 GCAGCAAGGCCAAAA GCCGC AAGA GCGAC GATTTGCCCGAGCCG TERM 60 43456 - 43408 - G 75 -9.6 -4.14056 | gap 2, overlap 43404 43401 43402 43447 AGGCGAAAGGACAAA CCGGCGAAGA-TCGCC-CGCTCGC CGC GCACGCACAGCAAGTCCTCGCCGG CGAAGATGGCCGGGG Rru_A0041 44293 - 43838 - | cytochrome c, class II TERM 61 44895 - 44925 + G 71 -3.1 -4.59414 | overlap 44904 CTTGCGGCCGGGGAT GATCTGCTGTCGG AGGGC CCGGCTCCCGATC TTTTCCTTCTTATCG Rru_A0042 44634 - 45131 + | hypothetical protein TERM 62 45190 - 45134 - f 74 -11.5 -3.54424 | gap 1, opp_overlap 45183, overlap 45135 GCGGACCGGCTGAAA CGCCGACGCCATCGGGGCGGGATC GCCCTTCCCG GTTCCCGCCCCGATGG-GGGGGCC CCCTCGTGTAGGCCG TERM 63 45189 - 45135 - f 77 -15 -2.72511 | gap 1, opp_overlap 45183, overlap 45134 CGGACCGGCTGAAAC GCCGACGCCATCGGGGCGGGATC GCCCTTCCCG GTTCCCGCCCCGATGG-GGGGGC CCCCTCGTGTAGGCC Rru_A0043 45342 - 46511 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase Rru_A0044 46548 - 46799 + | acyl carrier protein TERM 64 47578 - 47633 + G 83 -9.6 -4.30576 | opp_overlap 47577 CGTCGCCAAGGATAC CTGCCGGCCCTTCTGCAAGGATCG CAGCGGCA TGGTCCTGGCCGAAGGCGCGGCGG TTTTCGTGCTGGAAA Rru_A0045 46946 - 48160 + | 3-oxoacyl-[acyl-carrier-protein] synthase II Rru_A0046 48174 - 48683 + | hypothetical protein Rru_A0047 50377 - 48770 - | ABC transporter component Rru_A0048 51146 - 50520 - | lysine exporter protein LysE/YggA Rru_A0049 51629 - 51225 - | biotin/lipoyl attachment TERM 65 51522 - 51570 + g 74 -15.2 -3.03124 | gap 1 CGGACGGGCGCTCGC GCTCGGCGCGGCCGCGAGGGGGG CGGT CGCCCCTT-CGGGGGCGTCGAGC TCTTCCACCGTCACG Rru_A0050 52033 - 51626 - | hypothetical protein Rru_A0051 53599 - 52046 - | carboxyl transferase TERM 66 53862 - 53831 - R 100 -15.3 -5.48303 | opp_overlap 53835 53836, overlap 53836 ACAAGCCCAAAAAAA GAAAAGGCGCCTT TCCGTC AAGGCGCCCTTTC AAAAGGGTGGTCAAC TERM 67 53857 - 53836 - R 100 -11.6 -5.55855 | opp_overlap 53835 53836, overlap 53831 CCCAAAAAAAGAAAA GGCGCCTT TCCGTC AAGGCGCC CTTTCAAAAGGGTGG Rru_A0052 55893 - 53905 - | biotin carboxylase TERM 68 55051 - 55088 + g 89 -9.8 -4.46212 | gap 1 CAGGAAGTAGAAATT GCGCGCGGCGTCGACGA TGAAT TCGATGGTGCCG-GCGC TTTTGTAATCGACCA Rru_A0053 57479 - 55947 - | carboxyl transferase TERM 69 55972 - 55990 + g 70 -2.2 -4.63218 | ATGTTGCCGTGCTTG CGCCAGGG ATT CTCCAGCG TTTTGTTGCGCAGCA TERM 70 57522 - 57559 + H 85 -3.3 -5.40072 | gap 1, overlap 57525 CCCAAAGGCGGCGCC GGACGGGTGTTGCCCCGG TTT TCGGGG-ACCGTCCGTTA TTTTTTTAAAAAAGA TERM 71 57525 - 57556 + H 85 -7.2 -4.79949 | gap 1, overlap 57522 AAAGGCGGCGCCGGA CGGGTGTTGCCCCGG TTT TCGGGG-ACCGTCCG TTATTTTTTTAAAAA TERM 72 57583 - 57573 - H 88 -6.8 -5.0133 | opp_overlap 57573 TATTTTTTTAAAAAA GACG CGC CGTC TTCCCTCTTGTCCTT TERM 73 58079 - 58092 + H 75 -8.1 -4.25104 | CGGGGGTGTTTCCCC CCGTC AAGG GACGG TTTTCATACGAGGAG TERM 74 58999 - 58977 - g 72 -6.8 -4.18018 | overlap 58978 CGTGGTGACGCAAAA GGGCAAGGGC TAT GCCCCGGCCG AGAACGCGCCCGACA Rru_A0054 58117 - 60054 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 75 60115 - 60081 - T 100 -27.4 -3.18264 | opp_overlap 60086, overlap 60086 CGCTGTATTCATTAA GAAAAGGGCCGCATCC CGG GGATGCGGCCCTTTTC CAATTCAAGAAGGCT TERM 76 60110 - 60086 - T 100 -21.5 -4.72497 | opp_overlap 60086, overlap 60081 TATTCATTAAGAAAA GGGCCGCATCC CGG GGATGCGGCCC TTTTCCAATTCAAGA TERM 77 60086 - 60110 + T 100 -21.5 -4.19238 | opp_overlap 60086 60081 TATTCATTAAGAAAA GGGCCGCATCC CGG GGATGCGGCCC TTTTCCAATTCAAGA Rru_A0055 61011 - 60139 - | VacJ-like lipoprotein TERM 78 61168 - 61158 - H 71 -8.2 -4.10453 | overlap 61147 GAAACGGGGCCAAAA CGGC TTC GCCG GCCAAGATCGGCGCT TERM 79 61597 - 61642 + G 71 -12.5 -3.29324 | gap 1, overlap 61593 GGCCAAGACGCTTGG GGTGGCG-GGGCGATTCGATCG CAT CGATCCGGCCGCGCGCGCCACC TTCGATTTCGATCGG Rru_A0056 61427 - 62065 + | toluene tolerance Rru_A0057 64900 - 62231 - | hypothetical protein Rru_A0058 65955 - 64954 - | dihydrokaempferol 4-reductase TERM 80 66211 - 66251 + H 90 -15.3 -3.53761 | overlap 66245 TGTGCATCGCGGCCC GGCTGGCCGGCGCGGTTCC CAA GGAATCGCCCCTCCCGGCC TTTGGGGCCGGCTTC Rru_A0059 66362 - 67372 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 81 67468 - 67514 + F 85 -6.3 -5.13343 | gap 1, opp_overlap 67442 67433 67432, overlap 67469 CCAGATTTCGCGCTC CCTGCCCTAGGGCGCGGGCCCG CAGC CGGGCCC-CGGCGGACGGCGGC TTTTGTTTTCCGTTC TERM 82 67469 - 67513 + F 73 -9.8 -3.66379 | gap 1, opp_overlap 67433 67432, overlap 67468 CAGATTTCGCGCTCC CTGCCCTAGGGCGCGGGCCCG CAGC CGGGCCC-CGGCGGACGGCGG CTTTTGTTTTCCGTT TERM 83 67579 - 67545 - f 90 -14.3 -3.46647 | gap 1, overlap 67543 GCCACCCAGGAAAGA GCCGCCGTCCTCCAGC CAAG GCCGGAGCACGG-GGC GTGTAACAGGATTGT TERM 84 68783 - 68762 - g 79 -7.1 -4.59773 | GGCGACCGCCAAAAA GGCCAAGGC GGCG GCCGAGGCC CAGTCGTCAGCGGCC Rru_A0060 67641 - 68804 + | radical SAM family protein Rru_A0061 69518 - 68790 - | purine phosphorylases family protein 1 TERM 85 68944 - 68921 - G 77 -13.8 -3.41051 | opp_overlap 68922, overlap 68922 CCAGGGCCAGCAGAA TGGGCGCCAC CACC GTGGCGCCCT TTTCGTTGATGCCCT TERM 86 68943 - 68922 - G 80 -17.3 -2.64416 | opp_overlap 68922, overlap 68921 CAGGGCCAGCAGAAT GGGCGCCAC CACC GTGGCGCCC TTTTCGTTGATGCCC TERM 87 68922 - 68943 + g 100 -17.3 -4.45544 | opp_overlap 68922 68921 CAGGGCCAGCAGAAT GGGCGCCAC CACC GTGGCGCCC TTTTCGTTGATGCCC Rru_A0062 71530 - 69560 - | terpene synthase, squalene cyclase TERM 88 69793 - 69833 + g 76 -14.8 -3.14132 | gap 2, opp_overlap 69802, overlap 69802 CGCCGGCCGCCATCA GGCCAAGCACCGCCCAGGCG GTT TGACTGGGCG-TGC-TGGCC TTGCTGACCGAGCGC TERM 89 69884 - 69906 + g 83 -12.6 -4.08767 | opp_overlap 69863 GCAATCCTCGCCCCA GCCGCCGTCG TCG CGCTGGCGGC TTTTCAGCCAATCCA Rru_A0063 72931 - 71633 - | amine oxidase TERM 90 72127 - 72111 - G 83 -15.1 -3.72695 | AGGCCGGGCAGCAAA CCGGCGG CCA CCGCCGG CGGTACGGCCAGCAC TERM 91 72551 - 72531 - G 73 -12.5 -3.48395 | AGCCCTTCCAGATAA TCCCGGGCC CGC GTCCCGGGA ATGCGCCGGTCGGCC Rru_A0064 75003 - 72940 - | squalene-phytoene synthase Rru_A0065 75893 - 75000 - | squalene/phytoene synthase TERM 92 76326 - 76384 + G 77 -15.8 -3.03701 | gap 1, overlap 76330 76375 76377 CCTTTGACGTGTCGA TCGCCGACGCGGCGGC-GACGGCCGGC GGCCCG GCCAGCCCTCCGCCCTCGCGCCGGCGC TGTGCTTTCCTGCGC TERM 93 76516 - 76562 + G 72 -7.1 -4.2349 | gap 1, opp_overlap 76530, overlap 76517 CTGTCCGCTGCGCCG ACGGGCCGAAGC-GACGGTGCC CTGC GCCGCCGACCGCTTCCGCTCGC TTTTCGATCTGGCGC TERM 94 76710 - 76726 + G 73 -3.5 -4.59109 | TCCACCCCGAAGACC GCGGCCG TGA CGAACGC TTTTTCGCCAGTCTG TERM 95 77047 - 77011 - g 73 -14.4 -3.14344 | gap 2, opp_overlap 77016 CATCCGGGTCATCAA CCGCGCCG-GA-GCCCGG TTG CTGGGCACCACGGCGCGG GCGGCGGCGGGCCGC Rru_A0066 76073 - 78394 + | PAS/PAC sensor Signal transduction histidine kinase Rru_A0067 78397 - 78834 + | hypothetical protein Rru_A0068 79945 - 78818 - | Alpha/beta hydrolase fold Rru_A0069 80952 - 79942 - | ABC transporter component TERM 96 81190 - 81215 + r 71 -8.2 -4.04206 | overlap 81184 81192 CGTCTGCGACGGCGG TGGCGGGGCG CTCGGC CACCCCGCTA TTTATCTGCACATCA Rru_A0070 82311 - 81316 - | hypothetical protein TERM 97 82443 - 82410 - H 70 -13.1 -2.88861 | gap 1 TAGGATGGCCAGAGA TCCGCCCCAGGGCTCC AGC GGAGCCG-GTGGCGGA CTGGAAAACGGCTCG Rru_A0071 82639 - 82902 + | hypothetical protein TERM 98 82949 - 82977 + T 100 -21.7 -4.95758 | GCTGAGTGACACGCA CCCCGCCCCCCGA TGA TCGGAGGGCGGGG TTTTTGTCGTCTGGT Rru_A0072 84884 - 83004 - | heat shock protein 90 TERM 99 85425 - 85401 - g 77 -4.2 -4.84359 | opp_overlap 85406 GCAGTTTCATAAAAA CATAACCGCC TGCCG GGTGGTTGTG GAAATGCACCATAAA Rru_A0073 85297 - 85677 + | ribosomal subunit interface protein, putative TERM 100 87198 - 87188 - g 72 -6.8 -4.25104 | opp_overlap 87187 TGCTCTGCACGAAAA GCTG ACT CAGC GGTTTGTCGATAGAC TERM 101 87405 - 87395 - g 72 -8.2 -4.08692 | overlap 87396 CAACGCCGCCCAAAA GGCG CTG CGCC GGGAAATCGGCGAGC Rru_A0074 85794 - 88994 + | helicase-like TERM 102 89028 - 89057 + G 81 -15.1 -3.53444 | CCGGAGACGGGGCGG GCGGGCTATCG CCAGGGAT CGATAGCCCGC TTTCGCAGCGGATCG Rru_A0075 88991 - 89425 + | RNA-binding S4 TERM 103 89531 - 89558 + F 100 -9.7 -5.00616 | overlap 89533 CACCATCAGGACTCC GGCCCGGACCG GACCTG CGGCCCGGGGC TTTTTTCCAAAGCGG TERM 104 89631 - 89667 + G 86 -8.6 -4.77036 | gap 1 CGAGGCGGGCCAGCG GGCCACGACTCCGCAGA CCCT TCAGCGG-GCCCTGGCC TTTTTGCTGGTCGAG Rru_A0076 89581 - 90036 + | hypothetical protein Rru_A0077 90214 - 90552 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 105 90564 - 90608 + F 77 -11.5 -3.60473 | gap 2, overlap 90567 TTGAGCAACGCCCTT CCA-GTCT-TGGTCGGCGCCG CTTGA CGGCGCCGACGGCGGACTTGG TTACTTTGATCTGTC TERM 106 90567 - 90604 + F 74 -12 -3.51202 | gap 1, overlap 90564 AGCAACGCCCTTCCA GTCT-TGGTCGGCGCCG CTTGA CGGCGCCGACGGCGGAC TTGGTTACTTTGATC TERM 107 90656 - 90679 + G 83 -8.8 -4.68908 | GATATCAATCTCGAG TCCGTCGCAC AGTA GCGTGACGGA TTTCTTTTGCGTCGC Rru_A0078 90639 - 90914 + | hypothetical protein Rru_A0079 91210 - 91707 + | CarD family transcriptional regulator TERM 108 91740 - 91773 + T 78 -13.2 -3.21276 | overlap 91731 91743 CGTTGTCGCCGGTTT CAACGGAGGTCGTC GTTTCA GAGGGCCTCCGTTG TCTTATGGAGCGAGG TERM 109 91743 - 91770 + T 71 -9.1 -3.7511 | overlap 91731 91740 TGTCGCCGGTTTCAA CGGAGGTCGTC GTTTCA GAGGGCCTCCG TTGTCTTATGGAGCG Rru_A0080 92880 - 91792 - | chemotaxis sensory transducer Rru_A0081 94252 - 93164 - | chemotaxis sensory transducer Rru_A0082 96120 - 95041 - | chemotaxis sensory transducer TERM 110 95154 - 95171 + g 72 -8.4 -4.08394 | CAAGGCGGTAATGGC CCGAGG TCCGCC CCTCGG TTTTCAGGGGGATCT TERM 111 96513 - 96538 + G 71 -14 -2.90227 | gap 1, opp_overlap 96491, overlap 96518 96521 GGAAGCCGAGGGCGC CGCCC-GGGCC CAGGC GGCCCTGGGCG CTTTGGTGGTTGGCC TERM 112 96518 - 96539 + G 79 -11.5 -3.84246 | opp_overlap 96491, overlap 96513 96521 96538 CCGAGGGCGCCGCCC GGGCCCAGG CGGC CCTGGGCGC TTTGGTGGTTGGCCA Rru_A0083 96304 - 97128 + | nuclease, SNase-like TERM 113 97378 - 97396 + G 72 -5.8 -4.38154 | overlap 97389 97391 CGTCCATGGCGGGCC CGGGGCGG GAA CGGCGCCG TTTTGTCGGCGCTAT Rru_A0084 97229 - 98185 + | prolyl aminopeptidase Rru_A0085 98274 - 99635 + | response regulator receiver modulated diguanylate cyclase Rru_A0086 99635 - 100087 + | hypothetical protein TERM 114 101021 - 101071 + G 72 -11.8 -3.53811 | overlap 101024 GGCCGCCTTGCTGCG CGAGGGGGCGG-GGCCGGCGGATC TGGCC GATCCGGCGGCGATCGCCCGC-CG TTTGAAAGCCCTGCC Rru_A0087 100089 - 101330 + | hypothetical protein TERM 115 101364 - 101332 - f 82 -11.9 -3.85698 | TCCCGGCCGCATAAA CGCCTGCCCCACC CTTGGTC GGCGGGACCGGCG GCCCCAGGTTAGAGC TERM 116 102136 - 102174 + G 70 -10.8 -3.53779 | opp_overlap 102150 102151, overlap 102130 CATCGCGGCGATCTG GCCGAACAGATCAACGCC CTG GGCGTCGGCCCGGTCGGC TTCATCTTTTCGACC Rru_A0088 101509 - 102531 + | zinc-containing alcohol dehydrogenase superfamily protein TERM 117 102554 - 102567 + F 74 -5.9 -4.56597 | opp_overlap 102553 102554, overlap 102553 GTTCCGGCGGAAAAG GCGGT CGCG GCCGC TTTTTCCGCCAAGCC Rru_A0089 102652 - 104541 + | ATP-dependent DNA helicase RecQ Rru_A0090 104817 - 105059 + | prevent-host-death protein TERM 118 105312 - 105370 + G 75 -9.4 -4.08767 | opp_overlap 105310, overlap 105315 CCGTTCGACACGACC CTCGCGCGCCTGGCC-GGCGTGCTTTCC GACCG GGCGCGGGCGCAAGGCCAGGCGC-CGGG TTTTGCCGACATCGC Rru_A0091 105063 - 105497 + | PilT protein-like TERM 119 105770 - 105757 - f 84 -5.3 -5.00616 | opp_overlap 105757 TCTCGCGTGAAAAAA CCATA ACCC TATGG CTTTTTCTCGCAAAA Rru_A0092 105873 - 107150 + | extracellular solute-binding protein Rru_A0093 107196 - 108065 + | binding-protein dependent transport system inner membrane protein Rru_A0094 108062 - 109000 + | binding-protein dependent transport system inner membrane protein Rru_A0095 109007 - 110125 + | ABC transporter component Rru_A0096 111101 - 110136 - | secretion protein HlyD Rru_A0097 111680 - 111258 - | class I peptide chain release factor TERM 120 111735 - 111695 - R 88 -13.3 -3.59979 | opp_overlap 111698 111710, overlap 111710 TCGGCCCATCCTAAA GCGGTAAGCGGAAAACCGG TAT CCGATTTTCCGCCCACTTC TTTATGGGGCCAAAG TERM 121 111698 - 111732 + r 84 -11.4 -4.06419 | opp_overlap 111695 111710, overlap 111710 GCCCATCCTAAAGCG GTAAGCGGAAAACCGG TAT CCGATTTTCCGCCCAC TTCTTTATGGGGCCA Rru_A0098 112948 - 111737 - | cystathionine gamma-synthase TERM 122 112815 - 112775 - G 85 -6.1 -4.96848 | gap 1, opp_overlap 112811, overlap 112809 GCGCGTATACAAAAA CGG-CGTGTCCTCGGCCA TGTCAT TGGCCGAAAAGCCGACCG CCTCGGGCTTGGTGA TERM 123 113031 - 113009 - R 73 -4.8 -4.68593 | overlap 113012 GCTATCACGCAAAAA TCAGGGCG TAAACCG CGCCCTCA GCGTTGCTTGATGAC Rru_A0099 115020 - 113029 - | Serine phosphatase TERM 124 113973 - 114028 + g 70 -11.6 -3.36327 | overlap 113974 GGGCCATCGCCCCGA TCTCGTCGGCGGCCTCCTGGCCTTCG ACGG CGCGGTCGAGGGTGCCGCCGGCAAGG TTCTGCATCACCTCG Rru_A0100 115379 - 115035 - | hypothetical protein Rru_A0101 116010 - 115438 - | hypothetical protein Rru_A0102 116907 - 116071 - | diguanylate cyclase TERM 125 116342 - 116314 - G 71 -3.1 -4.66418 | gap 1, overlap 116315 GAAAAGAATAAGAAA CTCCTCGCCGCC GACACG GGCGG-GAAGAT CGGGGGGGCGGCGAC Rru_A0103 117072 - 117287 + | SlyX TERM 126 117574 - 117619 + F 78 -10.1 -3.86015 | ATTGGCCCCTGACCC GGGCCTTCCGGCCCCCCCCCT TGCC AAGGGGCGTCCCGGCCGGCCC TTTATCACGGGCCTA TERM 127 119276 - 119314 + G 78 -14.6 -3.32022 | gap 2 GATCTGTCCGATCGC GGCGTCG-GCGG-CCGCG AGGCC CCCGGTCCGCTCGACGCC TTCCTCTATACCGAG TERM 128 119345 - 119371 + G 77 -12.2 -3.63569 | CGCGGCATCTACCGG CCGGGCGAGACG GTT CATCTCGCCGGG TTGTTGCGCGATTCG TERM 129 119906 - 119869 - g 77 -14.1 -3.35813 | gap 1 GCCGACGCTAACCAA CGCCAAGGGCG-CGGCCA CCC TGGCCGTCGCCCTGGATG GCGCGCCCGATACCT TERM 130 120058 - 120079 + G 71 -9.4 -3.83026 | gap 1 CGAGGGGGACTCCCT GGCCGAGGG GGCGA CCC-CGGCC TTTGATCTGGCCGCC TERM 131 121098 - 121120 + G 81 -11.2 -4.07568 | CCGATTTCACCGGCC GGCTGCGGCT GAT GGCCGTGGCC TTTTCCGGCGCCGGC TERM 132 122126 - 122173 + G 76 -14.9 -3.14931 | gap 3, opp_overlap 122094 122095 CTGCTGGGCGACGGA CCGCGCGCCGTCGC-C-G-CCCTG AAA CAGGGGCTGGGCGACCGGGCGCGG TTGGTCAGCGATCGC Rru_A0104 117743 - 123022 + | Alpha-2-macroglobulin-like protein TERM 133 123218 - 123258 + G 77 -13.1 -3.60412 | TTCTGACCGCCGAGG GGGCTTGGCGGCTGCCCGG CGA CCCGGCGGCGGTCGATCCC TTCTATCTGGCCTTG TERM 134 123874 - 123823 - g 74 -15.1 -3.06796 | CCCCATCTGACCGAA CGTCTGGCCGCCGGGGCG-CCGGCG GGCG CGCCGATCGCCACGACGATC-GACG AGGGGCTGCAAAACC TERM 135 123903 - 123923 + G 72 -11.8 -3.53012 | CCGGCTGGAGCGGTT GGCGCGGC GGGTG GCCGTGCC TTTGGGCCCCGGGCA Rru_A0105 123031 - 125151 + | penicillin-binding protein 1C TERM 136 125183 - 125209 + F 74 -13 -3.1886 | opp_overlap 125183 125182 125185, overlap 125172 TTTCGGTATAGGAAT GAGCGTGGGGAG ACG TTCCCCAGGCTC TTCCTGGCCTTCCGT TERM 137 125791 - 125823 + G 100 -16.9 -4.08216 | opp_overlap 125790 CGGTTTACAGTTAAT GCGCCAGGGGCGTCC CTT GGCCGCGCTTGGCGC TTTTGAACAGGCTGC TERM 138 125951 - 126006 + G 77 -15.3 -3.06831 | gap 1 GCGGTGACGCTGCTG CGCGCCGGGGGCGAGACCGCCG-GAG TCGAT CTCGCGGCGCTGTCGCGGCGGGCGCG TTGGCTGGAAGTTCG Rru_A0106 125246 - 126043 + | TPR repeat-containing protein Rru_A0107 126040 - 126951 + | MSHA biogenesis protein MshM TERM 139 127434 - 127449 + G 77 -7.5 -4.30576 | overlap 127424 127423 GGAGTGGCGCTTGGC CCGGC CGAGGC GCCGG TTTTCCTGATGACGG Rru_A0108 126966 - 127592 + | peptidase A24A, prepilin type IV TERM 140 128453 - 128486 + G 82 -15.9 -3.48395 | GGCTGATCACCGTCG TCGGCCGCCGCGCCC AGCA GCGCGAGGTGGCCGA TTATCTGGCCGGGGT Rru_A0109 127711 - 129354 + | type II and III secretion system protein TERM 141 129835 - 129849 + G 77 -5.6 -4.57474 | overlap 129826 129836 GGCGGTCGCTGGCTA TCGGCG CGG CGCTGG TTTTCTATGCCTTCG TERM 142 129998 - 130054 + G 73 -14.5 -2.83894 | gap 3, overlap 130011 130015 ATCGGGCTGGCTGAT CGCGGCGCCTGGG-GGCG-GACC-GGCG ATGG CGCCCGGTCTCGTCTTTCAGGCGCTGGG TCTGATCCTGGTCGT Rru_A0110 129366 - 130115 + | hypothetical protein TERM 143 130119 - 130134 + G 72 -11.8 -3.53343 | GAGGGGCGGTGAGGG CGCCGC CAGC GCGGCG TTTCGCCCGGGCCTT Rru_A0111 130112 - 130702 + | hypothetical protein Rru_A0112 130699 - 131421 + | hypothetical protein TERM 144 131987 - 131974 - g 77 -5.2 -4.70169 | opp_overlap 131964 131962, overlap 131969 131976 CCATATCGAACAAAA GCGC TCCGGG GCGC CCTTGGGGCAGGTTC TERM 145 132481 - 132493 + G 75 -4.7 -4.59773 | overlap 132481 GGATCTGCATTTCGA GCCCC AAG GGGCC TTTTTGCGGGTGCGC Rru_A0113 131507 - 133573 + | type II secretion system protein E TERM 146 134395 - 134406 + G 72 -7.2 -4.27796 | overlap 134394 CTGATCCGGCGTATC GCGC TCTC GCGC TTTTGCCATTTCTTC Rru_A0114 133573 - 134808 + | type II secretion system protein TERM 147 134907 - 134950 + G 82 -16.6 -3.28712 | gap 1 GGGGGTGGCGAGGGC CCGGCGGCTGCCCCGGGCATC CCG GGCGCCTGGGGCTGCC-CTGG TTCTGGCCGAGGGGG TERM 148 135824 - 135813 - g 72 -7.2 -4.25104 | opp_overlap 135819 CCCGGCGCAGGAAAA GCCG GGGC CGGC CTTCGCCTCAAGCCG TERM 149 135819 - 135841 + G 78 -6.2 -4.65078 | opp_overlap 135813, overlap 135836 GCAGGAAAAGCCGGG GCCGGCCT TCGCCTC AAGCCGGC TTTTGTTGGCCGTCT TERM 150 136104 - 136142 + G 81 -10.8 -4.07568 | CGGGGGGGAACTGCG CGCCGCTCTTGGCCCGGG GAC CCTGGTCGAAGCGCTGCG TTTTGACGGCGAGGG TERM 151 136197 - 136242 + G 86 -16.7 -3.53444 | gap 1, overlap 136186 136204 136207 CAGCCTTGCGGCGTC GACGGCGCCGTCGCCGGGGGTG TTG CGCGCCCGGCTG-GGCGCCGCC TTTCCCGGCCGATCC Rru_A0115 134884 - 136362 + | hypothetical protein TERM 152 137000 - 136984 - g 81 -15.1 -3.57144 | TCGCCGATGGGGAAA GCGGGGC GCC GCCCCGC GCCCTGCTGCTCGGC Rru_A0116 136359 - 137330 + | hypothetical protein Rru_A0117 137327 - 138064 + | ABC transporter component Rru_A0118 139101 - 138055 - | type II secretion system protein E TERM 153 138273 - 138237 - G 78 -9.9 -4.12188 | overlap 138238 GCAGCAGGCTGAAAA GGCCGATCCGCCCGCCG CCC CGACGGGCGAGCAGGCG CTGGTAAACCACGGC TERM 154 138272 - 138238 - G 70 -13.4 -3.06991 | overlap 138237 CAGCAGGCTGAAAAG GCCGATCCGCCCGCCG CCC CGACGGGCGAGCAGGC GCTGGTAAACCACGG TERM 155 138697 - 138659 - G 75 -11.6 -3.72695 | gap 1, opp_overlap 138628 138663, overlap 138662 ATGGTGTCGATCAAA CAG-GCCGCCGTGGTGG TCTTGC CCGCCCCGGCGGCGCCG GCGATCAGGATCAAG TERM 156 139162 - 139134 - R 100 -21.1 -4.78839 | opp_overlap 139133, overlap 139153 AACGGCATAAGAAAA GGGCGCCCCGTTA GTA TAACGGGACGCCC CTGGAAAGCCAAACC Rru_A0119 139355 - 139185 - | hypothetical protein TERM 157 139551 - 139564 + H 73 -9.5 -3.90318 | AGTCCTGGGGCGGAA GGCCC TGAA GGGCC TTTGTACAATCATGA TERM 158 139719 - 139740 + H 85 -2.2 -5.38326 | TCAAAAAATCCGTTC TCCGGTAA GCCTTG TGGCCGGA TTTTTGTTTGATTCA TERM 159 139957 - 139975 + H 70 -3.3 -4.63592 | TAGTCATTCTTCTTT TATTTTT AAATA AAAAATA TTGTTTTTATTGAAA TERM 160 141022 - 140986 - g 72 -7.2 -4.16943 | gap 1, opp_overlap 140987 140988, overlap 140987 CGGGAGAGGTGAAAA GCCTCGCCCGTCAGACC TCTC GGGC-GACGGACGAGAT TTCGGCGCAGATCTC TERM 161 141144 - 141115 - g 74 -15 -2.94695 | overlap 141110 TCACCATCAACCAGA CCTCCACCGCCG TCGCCT CGGCCGTGGAGG AACAGCGGGCGGCGA Rru_A0120 140025 - 141362 + | chemotaxis sensory transducer Rru_A0121 142092 - 141370 - | hypothetical protein TERM 162 141868 - 141826 - G 71 -14.8 -2.51815 | gap 2, opp_overlap 141840 141864, overlap 141825 141823 GCCAACGACGAACAG GGCGCGGCCGGGGGCGGCGG GCCCA CAGGCGCCCCCGG-CGC-CC GGGGTCTGGGAGTTT Rru_A0122 142472 - 142110 - | hypothetical protein TERM 163 142259 - 142302 + g 72 -13.9 -3.03124 | gap 1 GGAAGGGGCCGTCGG TGGGATCGGGGGTGCCGCTG GGCAG CAGCGG-ACCGCCGATCCGG TCTTCCAGGCTCGCC Rru_A0123 143962 - 142472 - | D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase TERM 164 144114 - 144131 + H 100 -9.1 -4.83615 | gap 1 GCCTTGCGGGGGCGG CGCTCGGC GAG GCCG-GCG TTTTTATGGGCGATA TERM 165 144248 - 144224 - H 70 -12.1 -2.94924 | overlap 144223 GCGCGATCGACAAAG CCTTCGGCAAG CGC CCTGCCGATGG GATGGCAGTGATGCC TERM 166 145407 - 145419 + G 77 -3.3 -4.90266 | GCTCTGCGGGATTCG CCGCT TCC AGGGG TTTTTCGTTGATACC Rru_A0124 144259 - 145608 + | diguanylate phosphodiesterase TERM 167 146118 - 146089 - g 72 -13.5 -3.13522 | gap 1, overlap 146087 AGGCTTTGAGCAAGA CCGGCCCG-CTGGG GAC CCCGGGCGGACCGG AGATCGGCCTTGACG Rru_A0125 145605 - 146954 + | diguanylate phosphodiesterase Rru_A0126 146951 - 147766 + | ABC transporter component TERM 168 148228 - 148245 + G 70 -2.5 -4.59511 | overlap 148233 148241 AACATCTATGCCCTC GGGCTGC CGCT GCTGGCC TTTTTCGCCAATCTT TERM 169 148269 - 148299 + G 74 -2.4 -4.75404 | overlap 148295 CAATCTTCTGGTGAT GGGGTGGGCCATCG GCC TGATCGTCTGCGCC TTTTTGCTGCGCTTT Rru_A0127 147763 - 148611 + | ABC-2 transporter component Rru_A0128 149820 - 148621 - | Na+/H+ antiporter NhaA TERM 170 149625 - 149608 - G 75 -3.3 -4.78107 | overlap 149620 GACCAGCAGGAAAAA GACCGCC ATCA AGCCGTC GTTGATCCACAGCAG Rru_A0129 151015 - 149921 - | hypothetical protein Rru_A0130 152929 - 151454 - | chemotaxis sensory transducer TERM 171 151932 - 151959 + g 75 -11.4 -3.64703 | gap 1 CCGCTGGCGGCCTGG GCGGCATCGA-TC ACC GAGTCGATGTCGC TTTCAATGCCCGCCA TERM 172 153633 - 153605 - g 77 -5.3 -4.58395 | overlap 153606 153607 CTGACGGCGCAAAAA CTGCA-CACCGCC CTGGT GGCGGCGCTGC-G CGCCTATGACGACAT TERM 173 154004 - 154027 + G 77 -5.2 -4.65895 | CTTTACATGCCGACC GGCGATGGTC GCGA GACCGTGGTC TTTTTGCATGCCGCC Rru_A0131 153176 - 154189 + | response regulator receiver (CheY) and unknown domain-containing protein Rru_A0132 155795 - 154209 - | peptidase S13, D-Ala-D-Ala carboxypeptidase C TERM 174 155644 - 155687 + g 70 -6.4 -4.25056 | overlap 155645 TAATGGGCGATCAGT TCGGCGGTCGTCGCCGTCTT CGCC GGGCCGGCCGCCGCCGCCGC TTTCTTGGTGGCCTC Rru_A0133 156027 - 157061 + | glycosyl transferase, group 1 Rru_A0134 157179 - 158666 + | succinate semialdehyde dehydrogenase Rru_A0135 158726 - 159301 + | molybdenum ABC transporter ATP-binding protein TERM 175 159811 - 159799 - g 72 -5.5 -4.36914 | overlap 159800 159803 TTCTTGGCGAGAAAA CGACG GCG CGTCA GGGCCTGGGGCTGGT Rru_A0136 159420 - 160346 + | hypothetical protein TERM 176 161137 - 161101 - g 75 -9.4 -4.07568 | gap 1 GGGGCTTGGCGAAAA GGCGG-TGAAGGCCGAT TACG ATCCGCCCTCGGCCGCC GCCGACAAAGTGGCC TERM 177 161138 - 161170 + G 73 -6.1 -4.31587 | CCGCCCTCGGCCGCC GCCGACAAAGTGGCC GAT GGTCGCCTTGACGCC TTCTTCTTTTTCGGC Rru_A0137 160535 - 161587 + | TRAP transporter solute receptor TAXI family protein TERM 178 162393 - 162368 - g 85 -7.5 -4.72272 | opp_overlap 162371 162373, overlap 162369 162373 GCGGCTGATGAAAAA GGATATGGGCG GCGC CGCCCATGTTC TGGGGCTGGCCGCCC TERM 179 162657 - 162675 + G 87 -7.3 -5.0538 | overlap 162659 GCCCGCGTTGCCCTG GGGCCGG ATCTA CCGGCGC TTTTTTGCGATGACG Rru_A0138 161613 - 163004 + | leucyl aminopeptidase TERM 180 163080 - 163105 + F 70 -3.1 -4.61231 | overlap 163084 TGCAATTGTTTTGGT GCGGTGCGCGG AAGG CTGGGCATGGC TTTTTCCGGGTATCG Rru_A0139 163283 - 163636 + | MarR family transcriptional regulator TERM 181 163930 - 163961 + G 78 -15.8 -3.12449 | overlap 163928 163924 CGTCGAGCATCGCAT GCGAGCGCGGGGAG ATGT CTCTCTGCGCACGC TCTATATTCATCCCG Rru_A0140 163709 - 164479 + | AraC family transcriptional regulator Rru_A0141 165495 - 164512 - | delta-aminolevulinic acid dehydratase TERM 182 165801 - 165758 - R 93 -15.8 -3.57144 | opp_overlap 165760, overlap 165759 CTCTTGACCGGGAAA GCCCAGCGGCCGGACCCGCC GATC GATGGGGCCGGCCGCTGGTT ATCCGCCGCGGCGGT TERM 183 165800 - 165759 - R 88 -19.3 -2.74144 | opp_overlap 165760, overlap 165758 TCTTGACCGGGAAAG CCCAGCGGCCGGACCCGCC GATC GATGGGGCCGGCCGCTGGT TATCCGCCGCGGCGG TERM 184 165760 - 165799 + r 100 -22.8 -3.28712 | opp_overlap 165759 165758 CTTGACCGGGAAAGC CCAGCGGCCGGACCCGCC GATC GATGGGGCCGGCCGCTGG TTATCCGCCGCGGCG Rru_A0142 166781 - 165819 - | putative cyclase TERM 185 165923 - 165883 - G 70 -10.9 -3.53012 | overlap 165884 GGCTGTTGGGGCAAA GGGGCGCCCGGCGCCTCGA TCA CCGAGACGCCGTGGGGCCA ATCGGCCGGGGCGAT TERM 186 167504 - 167480 - g 95 -16.4 -4.09685 | opp_overlap 167480 GGTCATCGGGGAAAA GGGGGGCCCC GCGCA GGAGCCCCCC TTTGTGGTTAGACGA TERM 187 167480 - 167504 + G 85 -14.2 -4.05446 | opp_overlap 167480 GGTCATCGGGGAAAA GGGGGGCCCC GCGCA GGAGCCCCCC TTTGTGGTTAGACGA Rru_A0143 166860 - 167525 + | GCN5-related N-acetyltransferase Rru_A0144 168615 - 167512 - | NADH:flavin oxidoreductase/NADH oxidase Rru_A0145 169380 - 168772 - | TetR family transcriptional regulator TERM 188 169126 - 169087 - G 73 -12.3 -3.48276 | gap 3 TGTGGCGGCATAGAA GGT-GAGGGCGG-CGCGCAG GCG CT-CACGCCCGCCCTCGACC GTGTCGAGAACGGCG Rru_A0146 170029 - 169490 - | inorganic diphosphatase Rru_A0147 171778 - 170126 - | major facilitator transporter TERM 189 170647 - 170618 - G 72 -4.3 -4.53303 | gap 1, overlap 170622 170623 CATGTCGACATAAAA GACATTGGCGATCG CCC CCATCGCC-ACATC GGCCACCCGGTAGCT Rru_A0148 173680 - 171839 - | GTP-binding protein TypA Rru_A0149 174916 - 173693 - | PfkB TERM 190 173864 - 173837 - G 71 -3.3 -4.66535 | gap 1, opp_overlap 173837, overlap 173825 173838 173839 173853 AAGGCCGAAAAGAAA CCCGGC-GGCGA ACTGA TCGCCAGCCCCG GTGGTGTCGACGAGA TERM 191 173972 - 173995 + g 76 -14.6 -3.15544 | gap 1 GACGGCCAAGGCGCA GCGACCG-CGC AGC GCGGCGGTCGC TTGATCAAGATCGGC TERM 192 174248 - 174224 - G 71 -14.3 -2.87683 | opp_overlap 174216 ATAGCCCTCGATATA GGTGATGGCCG AAT CGGCGATCACC TCCGCGTCGATATCG TERM 193 175027 - 175051 + G 77 -9.9 -3.93216 | AAAGCCTTCGCCCAA CTTGGCGATCC GAA GGTTCGCCGGG TTCTTCTGATTTCGA Rru_A0150 174994 - 175677 + | hypothetical protein TERM 194 175819 - 175775 - g 73 -10.6 -3.6502 | opp_overlap 175797, overlap 175777 CAGCCCGGATCGAAA GATCCCGCCGTCGAGGCC GAATTCCGG GGCCCGGACGGCCGGAGC CAGGATTCCTCTGCG TERM 195 175817 - 175777 - g 70 -11.8 -3.40597 | opp_overlap 175797, overlap 175775 GCCCGGATCGAAAGA TCCCGCCGTCGAGGCC GAATTCCGG GGCCCGGACGGCCGGA GCCAGGATTCCTCTG TERM 196 176156 - 176128 - g 73 -13.2 -3.25823 | TTCGGGCGAGATCAA TGCCTGCGACCA TCTGG TGGTCGAAGGCA AGGTCGCGGCCAATC Rru_A0151 175739 - 176482 + | hypothetical protein TERM 197 176659 - 176674 + G 72 -11.8 -3.61398 | ATCGGCCGCGATGAT CGCGGC CTGC GCCGCG TTCTTGGCGAACCCG Rru_A0152 176479 - 176895 + | hypothetical protein TERM 198 176957 - 176969 + T 71 -5.5 -4.35742 | overlap 176955 AAAGGCTCCATCTCT CCTTC CGT GGAGG TTTTGATGATTGACT TERM 199 177057 - 177046 - T 85 -5.8 -5.03747 | opp_overlap 177054 AAAGGGGGCAAAAAA TCCG GTTC CGGA AGAAGCTCTTCTGTC TERM 200 177221 - 177205 - T 84 -9.5 -4.4634 | opp_overlap 177205 AATGGGAAGAAGAAA GGAATAC AAG GTATTCC TTATTAATAGTGAGA TERM 201 177205 - 177221 + T 71 -9.5 -3.75024 | opp_overlap 177205 AATGGGAAGAAGAAA GGAATAC AAG GTATTCC TTATTAATAGTGAGA TERM 202 177671 - 177683 + T 70 -3.3 -4.64861 | TTACAAATGACAAAA GGCTT TTA GGGCC TTTGTTTTCCGCCGG Rru_A0153 178582 - 177869 - | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III TERM 203 178537 - 178484 - G 100 -11.6 -4.58283 | gap 3 CAAGGTCGCGAAAAA CCGCTCGACATCCGCCGG-GGCCAAGG GAA CCGGGGCCGCCGG-GG-TGACGGGCGG AGTGCTCGACGGGCG Rru_A0154 179385 - 178588 - | dihydrodipicolinate reductase Rru_A0155 180251 - 179583 - | TetR family transcriptional regulator TERM 204 181566 - 181584 + G 72 -13.8 -3.01712 | TCTGGTCGGCACCGC CCTGGCCG GTT CGGCCGGG TCTTCCCCCACCCAC Rru_A0156 180433 - 181605 + | secretion protein HlyD TERM 205 182143 - 182154 + G 74 -2.2 -4.72986 | overlap 182141 ACCGAGGCCCTGTCC TGGC ACTG GCTA TTTTTGCTCAACCTG TERM 206 182340 - 182352 + G 70 -2.6 -4.57569 | CGACTGGTTCGACTC GGCG CCCAT CGTC TTTTTCACCGCCTGC Rru_A0157 181624 - 183198 + | EmrB/QacA family drug resistance transporter TERM 207 183261 - 183292 + T 82 -14.5 -3.14132 | gap 1, opp_overlap 183254 183273, overlap 183290 CATCAAAGGGGTGGA GCGGCGGTAAAGGG GGGCG CCCTT-GCCGCCGC TTGATCGAGGGCGAC Rru_A0158 184996 - 183311 - | methyl-accepting chemotaxis sensory transducer Rru_A0159 186748 - 185135 - | exodeoxyribonuclease VII large subunit TERM 208 185172 - 185223 + g 70 -10.7 -3.53343 | gap 2, overlap 185172 CCCTGGCGGCCTTCG C-CCGCAGATCGCGGCC-GCCGCGC GGGC GACCGGCCGGCGGCGGTCGGCGGAG TTTCCGGAGCGGGTT TERM 209 186817 - 186837 + r 74 -11.1 -3.53012 | opp_overlap 186816 186815, overlap 186769 CGCCTTTGCCAAAGC CGGGCTTCC TTG GGAAACCCG TTTGGGCGCGACGCC Rru_A0160 187168 - 186872 - | hypothetical protein TERM 210 187607 - 187577 - g 77 -7.5 -4.41494 | gap 1, opp_overlap 187589, overlap 187597 TACCGCCAAGGAAAA GCCGATGCGCGGCG AGAT CATCGC-CACCGGC CCCGGGGCCCGGGGG Rru_A0161 187476 - 187790 + | chaperonin Cpn10 TERM 211 189008 - 188986 - g 74 -9.8 -3.8917 | overlap 188989 GGTCAAGGAGAAGAA GGACCGCGTC GAC GACGCGATGC ACGCCACCCGCGCCG TERM 212 189427 - 189394 - g 77 -10.9 -3.79678 | gap 1 AATCCCCGAGAAGAA GCCGGCCCTGCCCGCC GGC GGCGG-CATGGGCGAC ATGGACTTCTAAGCC groEL 187808 - 189439 + | chaperonin GroEL TERM 213 189457 - 189492 + F 93 -17.6 -3.39908 | opp_overlap 189460, overlap 189461 CATCCTGGCTTGGAC CAAGGGGGCCGCTTCC GATC GGGGGTGGCCCCTTTG TCTATTTTGCCGCCG TERM 214 189461 - 189488 + F 100 -14.8 -4.33956 | opp_overlap 189460, overlap 189457 CTGGCTTGGACCAAG GGGGCCGCTTCC GATC GGGGGTGGCCCC TTTGTCTATTTTGCC Rru_A0163 189603 - 189860 + | XRE family transcriptional regulator Rru_A0164 189941 - 191668 + | Sulfate transporter/antisigma-factor antagonist TERM 215 196440 - 196427 - T 78 -4.5 -4.7254 | ACTGTTTACTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 216 197943 - 197971 + T 100 -15.4 -4.98531 | opp_overlap 197943 GCAACCAGATATCAA GCCGTTGATTCC AGACC GGAATCAGCGGC TTTTTGCTTTGGGGA TERM 217 197971 - 197943 - T 81 -13.9 -3.35278 | opp_overlap 197943 GCAACCAGATATCAA GCCGTTGATTCCA GAC CGGAATCAGCGGC TTTTTGCTTTGGGGA Rru_A0165 198455 - 198222 - | hypothetical protein TERM 218 198259 - 198287 + g 77 -15.3 -3.05596 | gap 1 GCCCTCAGCATTTCG GCCGCC-CGCGC CAGGAT GCGCGAGGCGGC TTCACTGCCAACCTC Rru_A0166 198628 - 199149 + | hypothetical protein Rru_A0167 199212 - 199511 + | hypothetical protein TERM 219 199953 - 199969 + T 100 -7.9 -5.19879 | TCTAGGTGCGATTTC GCGGCTC GGC GGGCTGC TTTTTGTCTTTGGCG Rru_A0168 200293 - 200012 - | hypothetical protein Rru_A0169 201227 - 200286 - | CRISPR-associated Cas1 family protein TERM 220 201179 - 201167 - G 79 -3.3 -5.06414 | CGCGCTGAAGAAAAA CGATC GAC GAGCG GTCCTTGATGGCGAT Rru_A0170 201895 - 201233 - | CRISPR-associated Cse3 family protein TERM 221 201387 - 201369 - G 78 -6.6 -4.68593 | overlap 201358 TCGATCACCGAAAAA GTGATGGC CTT GCCGCCAC GGGGAACGCGAACTT TERM 222 201815 - 201844 + g 77 -12.9 -3.53091 | TCCGCCATCGGTGCC GCCCTGATCGC GGAGCAAG GCGGTCAGGGC TTTGCGGGCGCCGGT Rru_A0171 202677 - 201892 - | CRISPR-associated Cas5e family protein Rru_A0172 203761 - 202682 - | CRISPR-associated Cse4 family protein Rru_A0173 204366 - 203764 - | CRISPR-associated Cse2 family protein Rru_A0174 206030 - 204363 - | CRISPR-associated Cse1 family protein TERM 223 204625 - 204640 + g 75 -9 -4.16016 | TCTTGAACATGCCGG CGGAAG GGGC CTTCCG TTTCTTGCCAAATCG TERM 224 205061 - 205080 + g 77 -3.4 -4.91109 | opp_overlap 205020 205019 CGCCGCCGTGGGGAT GGATGGGC AGAC GTCCGGCC TTTTTGTCGTCGCGA TERM 225 205789 - 205830 + g 82 -11.5 -4.07568 | gap 1 GCTTGCAAGGTGGCG GGC-GCGGGGGGGGTGAGGG AGC CCTTTACCCAGTCCGCAGCC TTTTGGCAGGGAAGG TERM 226 206227 - 206210 - R 76 -12.7 -3.30441 | TATGATTTTTTAGAA TCCCCGC TGGC GCGGGGA ACATCGGATTAGTAC Rru_A0175 209081 - 206319 - | CRISPR-associated helicase Cas3 family protein protein TERM 227 207202 - 207213 + g 72 -7.2 -4.25256 | opp_overlap 207202 CTGTTTTTTCCGAAA CGCC CAAG GGCG TTGTTTTCATGGGCC TERM 228 207732 - 207716 - G 74 -5.7 -4.56133 | overlap 207717 CGTCAACAACTAAAA CGCGCCG CGA CAGGGCG CAAATCCGCAGGGAT Rru_A0176 210102 - 209161 - | acetylornithine aminotransferase TERM 229 210326 - 210347 + r 70 -4.3 -4.53303 | gap 1 TCCTGTCAAAGGCTT GCGGGTCATG TGG CGAG-CCCGC TTTTATCTCGCCGTC Rru_A0177 211045 - 210683 - | lytic transglycosylase, catalytic TERM 230 211116 - 211103 - R 74 -5.9 -4.56597 | TCGGCCTTGGAAAAA CCGCG CTTG CGCAG GAACTCGTTACGATC TERM 231 211219 - 211250 + r 73 -10.1 -3.57144 | opp_overlap 211241, overlap 211221 CTCGTCGGTTGTGGT GCGGGGCGGGTTT TGAGAC AAACCGGCCCCTC TTTGAGGCTGGGAAG TERM 232 211221 - 211248 + r 72 -11.3 -3.36515 | opp_overlap 211241, overlap 211219 CGTCGGTTGTGGTGC GGGGCGGGTTT TGAGAC AAACCGGCCCC TCTTTGAGGCTGGGA Rru_A0178 211576 - 211268 - | CRISPR-associated Cas2 family protein Rru_A0179 213335 - 211593 - | CRISPR-associated Cas1/Cas4 family protein TERM 233 213564 - 213533 - R 76 -10.2 -3.76402 | opp_overlap 213543 213543, overlap 213543 AGCCGAGGCATCAAA GAGATAAAAAGGGG TCCG CCCCCTTTAATCCC GGCAAGGCGGAGATA TERM 234 213554 - 213543 - R 89 -7.2 -5.14985 | opp_overlap 213543 213543, overlap 213533 TCAAAGAGATAAAAA GGGG TCCG CCCC CTTTAATCCCGGCAA TERM 235 214266 - 214239 - R 85 -2.7 -5.40474 | overlap 214240 AGGGGTCGAAAAAAA TGGCTTGAAAA GGGCTG TCCTCAAGCCG GCCATTCGAGGGGCG Rru_A0180 215160 - 214303 - | hypothetical protein TERM 236 214926 - 214882 - G 74 -2 -4.7254 | gap 2, opp_overlap 214888, overlap 214885 ATCGGCCAGGAAAAA CAGGTGGTCATGGTGCCCCGGC CGC ACCGGGGCGCCATCGCT-C-TG ATGACCACAGAAGAA TERM 237 214888 - 214922 + g 75 -15.7 -2.78384 | opp_overlap 214885 214882 CAGGAAAAACAGGTG GTCATGGTGCCCCGG CCGCA CCGGGGCGCCATCGC TCTGATGACCACAGA TERM 238 215108 - 215118 + g 72 -8.2 -4.13767 | ATCGTCGCAGGGAGG GGCG TCA CGCC TTTTGCCGTCGGCGC Rru_A0181 215983 - 215189 - | hypothetical protein Rru_A0182 217629 - 215980 - | hypothetical protein TERM 239 216182 - 216196 + g 71 -2.8 -4.63218 | overlap 216167 TCCCAGGACGCCGCG GATTTC AAC GAGGTC TTTTCTTGAAGGACA TERM 240 216270 - 216255 - G 75 -9 -4.11692 | CATTCATTCCCAAAA TCCCTG CGAC CAGGGA CAGGGAAAGGCCGAT Rru_A0183 220433 - 217785 - | cold-shock DNA-binding protein family protein Rru_A0184 222079 - 220433 - | hypothetical protein TERM 241 220494 - 220469 - G 70 -11.1 -3.56862 | gap 1, opp_overlap 220487, overlap 220459 ATAAAGCCTGCGAAA CGCCGC-GACGG CCT CCCTCAGCGGCG AAGCCAGGGCGCTGT TERM 242 221837 - 221815 - G 78 -6.1 -4.65916 | CGCAGCCGAACAAAA GCCGGTCCC TCTCT GGGTCGGGC AGATAGGCATTCGCC Rru_A0185 224034 - 222076 - | hypothetical protein TERM 243 223478 - 223505 + g 70 -13.4 -3.01712 | gap 1, opp_overlap 223465 AACACCCGCCCGAAG CCCAGG-GTGCGC AGC GCGCCCACCTGGG TGTTCCAGGCCAGCG Rru_A0186 225704 - 224031 - | hypothetical protein TERM 244 225081 - 225104 + g 72 -8.8 -4.09685 | AAGGTCGGCCAACAG CGCGGTCTCT CCAG GGAGGTCGCG TTTTAGAACCTCGGC TERM 245 226290 - 226262 - H 81 -13.9 -3.35278 | opp_overlap 226262 GCAACCAGATATCAA GCCGTTGATTCCA GAC CGGAATCAGCGGC TTTTTGCTTTGTGGA TERM 246 226262 - 226290 + H 100 -15.4 -5.04601 | opp_overlap 226262 GCAACCAGATATCAA GCCGTTGATTCC AGACC GGAATCAGCGGC TTTTTGCTTTGTGGA Rru_A0187 226301 - 226591 + | hypothetical protein TERM 247 226997 - 226961 - T 83 -15.9 -3.04322 | GGGAACGGTGCAATA CCGCCCGACGAAAGAAG AGA CGTCTTTCATCGGGCGT CCAAGGTCGAGAAGG Rru_A0188 228815 - 227085 - | ABC transporter, transmembrane region Rru_A0189 230593 - 228812 - | ABC transporter, transmembrane region TERM 248 230418 - 230386 - G 100 -10.6 -5.18866 | gap 2, overlap 230390 230393 TTGAAAGAAATAAAA GCAACCAGCGCCCGCC CAT GGCGAGCGC-GGTC-C AGAAAACGACCGCGT TERM 249 230415 - 230390 - G 88 -14.7 -3.92097 | gap 1, overlap 230386 230393 AAGAAATAAAAGCAA CCAGCGCCCGCC CAT GGCGAGCGC-GG TCCAGAAAACGACCG TERM 250 230413 - 230393 - G 79 -16.1 -2.99031 | overlap 230390 230386 AAATAAAAGCAACCA GCGCCCGCC CAT GGCGAGCGC GGTCCAGAAAACGAC TERM 251 230687 - 230667 - R 72 -2.4 -4.7497 | overlap 230642 CGCACCGAGGAAAAA CCTGCGCT GTCGA AGCGATGG TGGGCCTGCGTCGAT Rru_A0190 232953 - 230821 - | TonB-dependent receptor TERM 252 233198 - 233215 + r 76 -6.2 -4.66609 | opp_overlap 233198, overlap 233182 CGACTCCTCAAGGGA GCTGCC GTGGGG GGCGGC TTTTTGGCTAAGGTC Rru_A0191 233728 - 233321 - | aspartate 1-decarboxylase-like TERM 253 233696 - 233708 + g 71 -9.1 -3.86346 | AAAGGGGCATCCGAC GGGTG GAA CACCC TTTGTCGAAGGCTCG TERM 254 234541 - 234569 + G 81 -8 -4.66833 | ACCGTCTGTCGGGCG CCGACCTGTCGC TCGCC GCGATCGGCCGG TTTTTACGGTTCGGC TERM 255 234688 - 234705 + G 77 -4.1 -4.73613 | opp_overlap 234688 GCGCTCATCAGATCA CCTTCAA TATA TTGATGG TTTTGTTGATGATGC Rru_A0192 233826 - 235253 + | multi anti extrusion protein MatE TERM 256 235666 - 235692 + T 93 -15 -3.86015 | GGATGCCGAGGTCCT GGGGGAGCGGGG GGA CCCCGGCCCCCC TTTCTGCACACCGTC Rru_A0193 237135 - 235912 - | Beta-ketoacyl synthase TERM 257 237329 - 237314 - H 100 -11.8 -4.90217 | opp_overlap 237312, overlap 237307 CAAAGACACCAAAAA CGGCCG TTTC CGGCCG GCTCCTTGCCCCATG TERM 258 237542 - 237528 - g 83 -3.4 -5.1675 | TGATCGAGGAAAAAA CCGGCC TTG AGCTGG AAAAGGATCCCTCGA Rru_A0194 237356 - 237643 + | hypothetical protein TERM 259 237837 - 237820 - f 71 -7.7 -4.07568 | gap 1, opp_overlap 237822, overlap 237822 GCCCTGTTTTTAAAA CA-GGCGG ATC CCGCCGTG GCGGGCCGTCTTTCA TERM 260 237834 - 237822 - f 73 -10.5 -3.63744 | opp_overlap 237822, overlap 237820 CCTGTTTTTAAAACA GGCGG ATC CCGCC GTGGCGGGCCGTCTT TERM 261 240567 - 240536 - g 73 -6.4 -4.41494 | overlap 240566 GATCGTCAATCAAAA CCGGCTGAAGACCA TCAA TGGCCAACAGCAGG CGTCGATGTCGGCGC TERM 262 242144 - 242108 - g 83 -8.5 -4.57569 | overlap 242110 TGACGTTTCGAAAAA CCCCTATGTCCGCGGCA GCG TGCCGCTGGCCCAGGTG GAAGGCGTGGTGACG Rru_A0195 237870 - 243644 + | hypothetical protein TERM 263 243649 - 243694 + F 100 -18.2 -3.55622 | gap 1, overlap 243650 TGGGAACCTGACGGG GGAC-GGACCCCACCCGGGCG CGGGT CGCCCGGGTGGGGCCCAGGCG TTTGGGAACGTTCAG TERM 264 243650 - 243693 + F 100 -21.7 -2.73159 | gap 1, overlap 243649 GGGAACCTGACGGGG GAC-GGACCCCACCCGGGCG CGGGT CGCCCGGGTGGGGCCCAGGC GTTTGGGAACGTTCA TERM 265 243917 - 243967 + G 95 -16.1 -4.07885 | gap 1, overlap 243903 GGCCTCGGGCTGGGT CAGGCCCTCGGCCTTGATGT-CGG CGGG CCGGACCCCAAGGCCGCGCGCCTG TTTTGGCAAACCATC Rru_A0196 243725 - 244675 + | hypothetical protein TERM 266 244671 - 244683 + F 74 -5.5 -4.56775 | overlap 244669 TGGTCGGAGAATTCG GCTGA CCG TCGGC TTTTTGACCCGCCCT Rru_A0197 244729 - 246138 + | hypothetical protein TERM 267 246942 - 246928 - g 72 -11.4 -3.55444 | opp_overlap 246911 246930 246932 GCCGGAGCGTTCAAA GGCGTC GGC GACGCC GATGTGCTTGCCGCG TERM 268 247674 - 247720 + G 71 -12.1 -3.25823 | gap 2, opp_overlap 247674, overlap 247677 247677 CGACCCGTGGACCAA GCTGGCCGAGGGGGCGGCGGCGC TTG GCGGCG-CGCCCCC-CGGCGCTC TTGATCTAGCGAAAA TERM 269 247718 - 247674 - g 72 -12.9 -3.14564 | gap 4, opp_overlap 247674 247677 247677 CGACCCGTGGACCAA GCTGGCCGAGGGGGCGGCGGCGC TTG GCGGCG-CGCCCCC-CGG-C-GC TCTTGATCTAGCGAA TERM 270 247677 - 247717 + G 79 -16.8 -2.51547 | gap 2, opp_overlap 247674, overlap 247674 247677 CCCGTGGACCAAGCT GGCCGAGGGGGCGGCGGCGC TTG GCGGCG-CGCCCCC-CGGCG CTCTTGATCTAGCGA TERM 271 247677 - 247718 + G 81 -16.6 -3.19602 | gap 3, opp_overlap 247674, overlap 247677 247674 CCCGTGGACCAAGCT G-GCCGAGGGGGCGGCGGCGC TTG GCGGCG-CGCCCCC-CGGCGC TCTTGATCTAGCGAA Rru_A0198 246145 - 248130 + | hypothetical protein Rru_A0199 248298 - 248104 - | hypothetical protein Rru_A0200 248466 - 249677 + | restriction endonuclease TERM 272 249811 - 249834 + T 76 -5.8 -4.62069 | opp_overlap 249805 249796 CCCGAACAACCTCAA GGCGGTCCGC GAAA GCCGGGCGCC TTTTTCGCATGCCCG Rru_A0201 250651 - 249857 - | endonuclease/exonuclease/phosphatase Rru_A0202 253059 - 250648 - | phospholipase D/transphosphatidylase TERM 273 253284 - 253244 - R 95 -12.6 -4.16943 | opp_overlap 253244 253261 253265 CGCCAGAGGCGAAAA CGGAGGCCTTCAGAAGTC GGTCT GCCTTGTGAAGGCTTCCG TTTCAAGGCGGTCGT TERM 274 253244 - 253284 + r 93 -15.5 -3.5393 | opp_overlap 253244, overlap 253261 253265 CGCCAGAGGCGAAAA CGGAGGCCTTCAGAAGTCG GTC TGCCTTGTGAAGGCTTCCG TTTCAAGGCGGTCGT Rru_A0203 253607 - 253299 - | hypothetical protein Rru_A0204 254201 - 253857 - | transcriptional regulator BolA TERM 275 254802 - 254755 - g 100 -12.5 -4.71426 | gap 1 GTTCGAGGAACAAAA CGGC-GAGGCCGCCCGCGCCCG GGTCT CGCGCGAGGGCGCCCGCTACCG CGAGGATGGGCCGCG Rru_A0205 254390 - 255001 + | heat shock protein DnaJ-like Rru_A0206 255074 - 256063 + | hydrogenobyrinic acid a,c-diamide cobaltochelatase TERM 276 256187 - 256172 - g 79 -6.8 -4.59853 | opp_overlap 256184 GGAAGCCTTGAAAAA CGTCAC CTCG GCGACG CTGCGCGCCGTGGCC Rru_A0207 256107 - 258008 + | cobalt chelatase, CobT subunit TERM 277 260867 - 260841 - g 100 -18.7 -4.18018 | opp_overlap 260844 CGGCCCGATCGAAAA GCGCGGCGACG GCCCG CGCCGCCGCGC CCTGGCGGTGCGGGT TERM 278 260844 - 260889 + G 76 -14.6 -3.21099 | gap 1, opp_overlap 260841 CCCGATCGAAAAGCG CGGCGACGGCCCGCGCCGCCG CGCCC TGGCGGTGCGGGT-GCGGCCG TTCATCCTGCGCCGG Rru_A0208 258034 - 261663 + | SNF2 helicase-related protein Rru_A0209 262486 - 261647 - | extradiol ring-cleavage dioxygenase III subunit B TERM 279 262682 - 262644 - R 86 -15.3 -3.39668 | gap 1, overlap 262636 262645 GCGCAAAGCCCAGAA CGCCAACGGCCCGCCGAT CAAG ACCGGCGGGCCGT-GGAA AGCGGAATACCGTGC TERM 280 262681 - 262645 - R 83 -16.6 -2.6348 | gap 1, overlap 262644 262636 CGCAAAGCCCAGAAC GCCAACGGCCCGCCGAT CAAG ACCGGCGGGCCGT-GGA AAGCGGAATACCGTG rpmB 263003 - 262704 - | 50S ribosomal protein L28 TERM 281 263127 - 263091 - R 82 -9.3 -4.4078 | overlap 263092 263120 263123 CTTCGTCAAGTAAAA TCGCCCCTTTTGGCGCA AGG CGCGGCAAACAGGGCGC CCGGGTCGTGGCGGA TERM 282 263126 - 263092 - R 74 -12.8 -3.24146 | overlap 263091 263120 263123 TTCGTCAAGTAAAAT CGCCCCTTTTGGCGCA AGG CGCGGCAAACAGGGCG CCCGGGTCGTGGCGG Rru_A0211 263912 - 263151 - | hypothetical protein Rru_A0212 264392 - 264006 - | hypothetical protein TERM 283 264208 - 264242 + g 79 -11.2 -3.90856 | AGGGCTTTTTCGCGC GCCGATCCCGCTTCGG CGA CCGGTGCGGCGGCGGC TTTGGTTCCGGCCTT TERM 284 264283 - 264301 + g 70 -2.3 -4.63218 | gap 1, overlap 264284 GGTTTTCCCTTGGTC GCGG-CGG GCGG CCGACCGG TTTTCTTCACCCCCC Rru_A0213 265736 - 264396 - | hypothetical protein TERM 285 265885 - 265854 - H 71 -8.6 -4.07687 | gap 1, overlap 265855 AGGGCGCCTGTAAAA CCCGGGATAGCGCCG AGT CGGCGAT-CCCCGGT CAAAACGCCGCCCCC TERM 286 265884 - 265855 - H 72 -12.1 -3.04398 | gap 1, overlap 265854 GGGCGCCTGTAAAAC CCGGGATAGCGCCG AGT CGGCGAT-CCCCGG TCAAAACGCCGCCCC TERM 287 265904 - 265891 - H 76 -9.5 -4.07885 | GATCCCCGGTCAAAA CGCCG CCCC CGGCG GTAAGGCGATGGGAC Rru_A0214 266139 - 267017 + | MutT/nudix family protein Rru_A0215 268052 - 267048 - | hypothetical protein TERM 288 267234 - 267213 - G 77 -3.7 -4.72272 | opp_overlap 267233, overlap 267224 CTCGCCCAGCAAAAA GATCGAC GACAGCAT GCCGATC ACCGGGACGCCCAGG Rru_A0216 268189 - 268683 + | AsnC family transcriptional regulator TERM 289 268677 - 268691 + F 73 -4.9 -4.66537 | overlap 268672 268674 CCATCTGAAGCGCAG CCCGT AGGGG GCGGG TTTTGTGTTGCGGCG Rru_A0217 268873 - 269850 + | citrate lyase TERM 290 269892 - 269879 - f 76 -5.9 -4.59773 | overlap 269854 269853 GTGGATCGCCAAAAA GGCGG CGAT CCACC CTTGGCGCGTGTCCA Rru_A0218 270069 - 271034 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha Rru_A0219 271269 - 271517 + | hypothetical protein Rru_A0220 272059 - 271583 - | hypothetical protein TERM 291 272078 - 272098 + r 88 -14 -3.61178 | AACGCCTTTTCTTAG CCGGTCGC TTCGT GCGACCGG TTTACGATAGATCGG TERM 292 272234 - 272210 - R 100 -17.2 -5.4833 | CGATCCAAGAAAAAA GAGCCGGCGT TGGCG ACGCCGGCTC GGTAGCGATCGCGGG pgk 273450 - 272257 - | phosphoglycerate kinase TERM 293 272418 - 272447 + g 72 -13.5 -3.13522 | overlap 272416 272411 GCAGCCGGCCCTCGG CGGTCGCCTGGGC GGCG GCCTGGGCCACCG TATTGGTGGCGGCGT TERM 294 273023 - 273011 - G 75 -3.3 -4.72272 | overlap 273012 TGGGCCGACGAAAAA GCGTC GTT GACGT AGAGATCGCACAGAT TERM 295 273521 - 273489 - R 100 -18.5 -4.07568 | opp_overlap 273478, overlap 273490 TGGTGCGCTCGAAAA CCCGGCCGCCCTT TTTGCGC AAGGGCGGCCGGA TAGCATGGTCGGGTG TERM 296 273520 - 273490 - R 90 -19.8 -3.04398 | opp_overlap 273478, overlap 273489 GGTGCGCTCGAAAAC CCGGCCGCCCTT TTTGCGC AAGGGCGGCCGG ATAGCATGGTCGGGT Rru_A0222 274552 - 273545 - | glyceraldehyde-3-phosphate dehydrogenase TERM 297 275924 - 275966 + G 83 -15.4 -3.54129 | ATGAGCGCGATCTGG CGGTCGAGCAGGGCCGGC TTGCCCT GCTGGCCCGGCGCGCCCG TTTGGCCGGAGTCTC Rru_A0223 274999 - 276603 + | polyphosphate:AMP phosphotransferase Rru_A0224 277595 - 276621 - | L-lysine 2,3-aminomutase Rru_A0225 278266 - 277592 - | metal dependent phosphohydrolase, HD region Rru_A0226 279630 - 278290 - | major facilitator transporter TERM 298 279164 - 279146 - G 91 -13.1 -4.26189 | GCATAAAGCCGAAAA CCGCCGG TTTCC CCGGCGG CGCTATCGCCAAAGG TERM 299 279697 - 279743 + r 78 -7.3 -4.58395 | gap 2, opp_overlap 279691, overlap 279699 279740 GCCGAGAAAGTCGGC TGGCGCCGTCGGCGCGT-C-AAT GGG ATTCGTGCACTCCGACGGCGCGA TTTTTAAAGAATCGG Rru_A0227 280085 - 279747 - | hypothetical protein Rru_A0228 280984 - 280082 - | twin-arginine translocation pathway signal Rru_A0229 282474 - 281044 - | glycosyl transferase, group 1 TERM 300 281425 - 281412 - G 71 -9.5 -3.86897 | CGCAGGCCGCATAAA GCGGC ACCA GCCGC TGCGGCCCCAGTTCC TERM 301 282035 - 282068 + g 88 -10.1 -4.37886 | overlap 282036 ACCCGGGGGCCAAGG GCGGCGAGGCGGGCC TGAC GGTCGGCGTCGCCGG TTTTATCGAAACTGC TERM 302 282036 - 282067 + g 73 -13.6 -3.2241 | overlap 282035 CCCGGGGGCCAAGGG CGGCGAGGCGGGCC TGAC GGTCGGCGTCGCCG GTTTTATCGAAACTG TERM 303 283819 - 283853 + G 84 -9.2 -4.56597 | gap 1 ACCGTCGGCCGCGAT CTCGGCG-CCGCGCT GATCGA GGCGCCGTCGCCGGG TTTTTGGCAGCGGGC TERM 304 284552 - 284531 - g 75 -9.3 -4.15833 | opp_overlap 284533 ATCACCACTGGAAAA GCGCCGGCG CCTT CACCGCCGC CTGATATCGCCGGGT Rru_A0230 282580 - 284556 + | asparagine synthase, glutamine-hydrolyzing Rru_A0231 285180 - 284572 - | hypothetical protein TERM 305 284655 - 284636 - G 86 -16.4 -3.53444 | GGATCGCCGCCTAAA GCCCCGCC TTCG GGCGGGGC GCAATAGGCGCCGTG TERM 306 284770 - 284731 - G 79 -7 -4.58283 | gap 1 CAAGGGGGCGAAAAA GGCGGC-GCAGGCCAGGGC CGG GCCGTGGGCTTCCACCACC TCGGCCGGGCCAAAG Rru_A0232 288021 - 285307 - | hypothetical protein TERM 307 285789 - 285847 + g 86 -16.6 -3.53811 | gap 2, opp_overlap 285776, overlap 285790 CATCGGCGACGGCCT CGCCGGCTTGCGGCGGTGGTGGCGCCGG GCTGG CCG-CGCCGCCGCCG-CGCGTGCCGACC TTTGGCCCCGGTCCG TERM 308 285790 - 285846 + g 95 -20.1 -2.72144 | gap 2, opp_overlap 285776, overlap 285789 ATCGGCGACGGCCTC GCCGGCTTGCGGCGGTGGTGGCGCCGG GCTGG CCG-CGCCGCCGCCG-CGCGTGCCGAC CTTTGGCCCCGGTCC TERM 309 286760 - 286746 - G 75 -9.2 -4.07568 | overlap 286749 CCCGGCGGGGCAAAA CGACGC GCA GCGCCG GTCCCTCGCCGCGCT TERM 310 287748 - 287732 - G 77 -3.5 -4.72272 | overlap 287733 GTCGGCCAGGAAAAA CGCCACG CCC CGAGGCC GAAGGCCACGCCAAG Rru_A0233 289485 - 288166 - | hypothetical protein TERM 311 288358 - 288342 - G 73 -6.6 -4.4017 | overlap 288356 CGAAGGGGCACAAAA GGCTTT GGGCG AAAGCC CGCTGGAACTTCTGG Rru_A0234 290006 - 289482 - | hypothetical protein TERM 312 291902 - 291877 - g 72 -8.2 -4.03888 | gap 1, opp_overlap 291877 CATCGAGAAGAAGAA GGCC-CAGGCC CTGGC GGCCGGCGGCC TTTACGTGATCGGCA Rru_A0235 290261 - 292951 + | preprotein translocase subunit SecA TERM 313 293162 - 293193 + F 100 -8.6 -5.60993 | gap 1, opp_overlap 293162 293182 GGGACCTTGTGACAA CCCGCC-ATGCCTGC CAA GCAGGAGGAGGCGGG TTTTTTTATGCCCGC Rru_A0236 293245 - 293634 + | camphor resistance protein CrcB Rru_A0237 293636 - 293992 + | hypothetical protein TERM 314 294003 - 294028 + F 73 -9 -3.92542 | gap 1, opp_overlap 293999 GCTAAGGAAACCGGG GCGCCGCCGTC CGCCT GACGGTGG-GC TTGTTTGCCGCTGGC Rru_A0238 294092 - 294277 + | hypothetical protein Rru_A0239 294339 - 294563 + | hypothetical protein Rru_A0240 294576 - 295127 + | NUDIX hydrolase TERM 315 295186 - 295219 + T 82 -12.3 -3.57144 | opp_overlap 295184 295185, overlap 295187 TCTGGACGATCAAGC TCTGAGAGCGGGGAC CGGA GTCCCCGCTCACCGC TTTAAACATCCACCG TERM 316 295187 - 295218 + T 79 -15.8 -2.74144 | opp_overlap 295184 295185, overlap 295186 CTGGACGATCAAGCT CTGAGAGCGGGGAC CGGA GTCCCCGCTCACCG CTTTAAACATCCACC Rru_A0241 298040 - 295221 - | DNA methylase N-4/N-6 TERM 317 295512 - 295532 + g 82 -12.6 -3.92324 | GATTTCGCCGGTGGA GGGGTGGA AGATA TCCACCCC TTTGATCTTGACCCG TERM 318 297351 - 297296 - G 73 -4.1 -4.59773 | gap 3, opp_overlap 297299 TTTCATCCCCAAAAA CCTCGTCC--ATCAGCATC-CGAACGCG ATG CACGTTCTCGTCGCCGATTTGGACGAAG ATCGAGCCGCTATCG Rru_A0242 301099 - 298055 - | Type III restriction enzyme, res subunit TERM 319 301466 - 301500 + r 76 -10.7 -3.73953 | gap 1 CCACTCTAACCGCCC CTGCCCCGATTACGCG TCTT CGGG-GATCGGGGCGG TTTCGTCGGGCTGGT Rru_A0243 302839 - 301475 - | tRNA/rRNA cytosine-C5-methylase TERM 320 301755 - 301797 + g 75 -11.9 -3.74747 | gap 1, opp_overlap 301750 301747, overlap 301756 GCATAGACCAGCCGG CCGCCCGGCTTGACCAGGGC GGCG GCGC-GGTCGAGCAGGGCGC TTTGCTCGGCGTTCA TERM 321 301756 - 301796 + g 76 -15.4 -2.84527 | gap 1, opp_overlap 301750 301747, overlap 301755 CATAGACCAGCCGGC CGCCCGGCTTGACCAGGGC GGCG GCGC-GGTCGAGCAGGGCG CTTTGCTCGGCGTTC Rru_A0244 304494 - 303031 - | inosine-5'-monophosphate dehydrogenase TERM 322 303071 - 303089 + g 70 -11 -3.53012 | overlap 303081 GCTTCCTTGGTGATG GTCACGTC GTG GACGTGGC TTTCGCGCCAGCCCG TERM 323 304588 - 304618 + r 80 -10.3 -4.07568 | gap 1, opp_overlap 304585 304586 AATTGCGCGAAAGCC CCGGCGGGCCACCG GTTC CGGCAGCCC-CCGG TTTTACCCGGCCCCC Rru_A0245 305452 - 304661 - | ribosomal RNA methyltransferase RrmJ/FtsJ Rru_A0246 306648 - 305449 - | Ppx/GppA phosphatase TERM 324 305725 - 305772 + g 80 -15.7 -3.34013 | gap 3, opp_overlap 305724 305723 GCGGCCGATACAAGG GTGGGCGGCCCGCGCCTGCGGGGT CAT ATCCAGCAGGCG-GG-C-GCCCAC TTCCTTGACGGCGTG TERM 325 306985 - 307024 + r 100 -21.8 -3.30159 | gap 1, opp_overlap 306990, overlap 306990 CCCCCAGCCAGCCTT TCAAAGGAGTTGTCAG-GC ATC GCTCTGACAACTCCTTTGA TTATGCGGCCCTTCC TERM 326 306990 - 307019 + r 95 -15.9 -3.9941 | gap 1, opp_overlap 306990, overlap 306985 AGCCAGCCTTTCAAA GGAGTTGTCAG-GC ATC GCTCTGACAACTCC TTTGATTATGCGGCC TERM 327 307019 - 306990 - R 93 -15.9 -3.54543 | gap 1, opp_overlap 306985 306990 AGCCAGCCTTTCAAA GGAGTTGTCAG-GC ATC GCTCTGACAACTCC TTTGATTATGCGGCC TERM 328 307271 - 307240 - R 100 -20.9 -4.4078 | opp_overlap 307240 TCGCTCCAACGAAAA CGCCCCCGCTCGC GGATCG GCGAACGGGGGCG TTTTTTAGTCAGTCT TERM 329 307240 - 307271 + r 100 -18.7 -5.17353 | opp_overlap 307240 TCGCTCCAACGAAAA CGCCCCCGCTCGC GGATCG GCGAACGGGGGCG TTTTTTAGTCAGTCT Rru_A0247 308303 - 307299 - | periplasmic binding protein/LacI transcriptional regulator TERM 330 307616 - 307630 + g 79 -11.4 -3.86944 | CCTTGATCGCCTCGA TGGCGC CGA GCGCCA TTTCATCGTTCTGGC TERM 331 308351 - 308371 + r 70 -3.2 -4.63932 | gap 1, opp_overlap 308351, overlap 308352 GCGTCACGGGAAGGA C-GGCCGGT TTCA ACCAGCCTG TTTTCTTGAGGGGTC Rru_A0248 309376 - 308360 - | inner-membrane translocator TERM 332 308546 - 308501 - G 77 -7.3 -4.57073 | gap 1, opp_overlap 308535, overlap 308505 CAGGGCCCCGAAAAA CGTACCCGTCAGCC-GGCCGAC GCC GCCGGCCAGGCTGGCGCCGCCG ATGACCACGGCGGCG TERM 333 308745 - 308757 + g 75 -4.7 -4.64676 | ACGGCATAGACGTAG CGGCC AAA GACCG TTTTATTGAGGATCA Rru_A0249 310932 - 309451 - | ABC transporter component TERM 334 309504 - 309520 + g 77 -3.5 -4.72986 | overlap 309505 CTTCCCGGGGGAATT CGGCGAC ATG GGCGCCC TTTTTGATGACGATG Rru_A0250 312441 - 310945 - | xylulokinase TERM 335 311614 - 311584 - G 100 -12.6 -4.63218 | gap 1, overlap 311563 GCTGCTTGAACAAAA CGCCG-CGACCCG GCCGCG CGGGTCGACGACG GGGGTGTCACTATAG TERM 336 312443 - 312464 + r 89 -4.4 -5.23316 | gap 1, overlap 312448 ATGCCAAGAAACATG GTCACGCGC CCCCC GCGC-TGGC TTTTTTGATCTGATG Rru_A0251 313373 - 312444 - | AraC family transcriptional regulator Rru_A0252 314578 - 313535 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 337 314604 - 314633 + H 73 -10.7 -3.64984 | gap 1, overlap 314602 314605 CCAAGGAATGTGATT TCAGCGGG-CAGAG ACG CTCTGGCCCGCAGG TGTTTTGCGAAGTGT Rru_A0253 314880 - 315950 + | GDP-mannose 4,6-dehydratase Rru_A0254 315943 - 316932 + | NAD-dependent epimerase/dehydratase TERM 338 317569 - 317595 + G 73 -9.3 -3.92659 | opp_overlap 317564 317565, overlap 317571 GATCGGCAAAGCGGC GCCCTGACCGG GGCCA CCGGTCCGCGC TTTGGCTTTTCCCAC Rru_A0255 317086 - 317742 + | hypothetical protein TERM 339 317973 - 318000 + G 75 -9 -4.07124 | CTTGACAGTTTGCTG GGCGGCCTGCCC GCCG GGGCGGATTGCC TTTATATCCATGATG Rru_A0256 317739 - 318245 + | GCN5-related N-acetyltransferase TERM 340 318361 - 318400 + G 81 -16.4 -3.11767 | gap 1, overlap 318361 CCTCCCGCTCCGTCC GGCGCGCCGCTTCCGGTGG TTT TCACCGGCA-CGGCGCGCG CTTATTTTCGCATCT TERM 341 318361 - 318401 + G 100 -16.2 -4.20817 | overlap 318361 CCTCCCGCTCCGTCC G-GCGCGCCGCTTCCGGTGG TTT TCACCGGCA-CGGCGCGCGC TTATTTTCGCATCTG Rru_A0257 318316 - 319392 + | hypothetical protein Rru_A0258 319389 - 320447 + | peptidase M48, Ste24p TERM 342 322205 - 322228 + G 78 -6 -4.64676 | AGATGCTGGCGGGCA TGGCGCTGAT CATG ATCACCGTCA TTTTGTTCAAGATGA Rru_A0259 320557 - 322602 + | carbon starvation protein CstA TERM 343 322765 - 322752 - g 71 -9.5 -3.84825 | GGGACCGACAGGAAA GCCGC TATG GCGGC GGCGACGGCGTGACG Rru_A0260 322595 - 322792 + | hypothetical protein TERM 344 322860 - 322825 - T 100 -20.4 -4.25283 | opp_overlap 322827, overlap 322811 322827 ACGCCGCGACCAAAA GACCGCCGGGCCCGGA GACA TCCGCGCCCGGCGGTT TTCGCATGCGGGCAC TERM 345 322858 - 322827 - T 100 -23 -3.73042 | opp_overlap 322827, overlap 322811 322825 GCCGCGACCAAAAGA CCGCCGGGCCCGGA GACA TCCGCGCCCGGCGG TTTTCGCATGCGGGC TERM 346 322827 - 322858 + T 100 -23 -4.13767 | opp_overlap 322811 322827 322825 GCCGCGACCAAAAGA CCGCCGGGCCCGGA GACA TCCGCGCCCGGCGG TTTTCGCATGCGGGC Rru_A0261 323807 - 322896 - | hypothetical protein TERM 347 323140 - 323153 + g 70 -2.4 -4.63592 | AACCGCACAGGCCTA TGGA TAATCC TCCA TTCTTTTTCTTCAGA TERM 348 323214 - 323228 + g 100 -10 -4.76041 | AGACAATAACATTTC TGCGCA TTC TGCGCA TTTTTGATCCATATC TERM 349 323515 - 323498 - G 77 -5.5 -4.66418 | TAAAACAAGAAGAAA CACTGGG CTTT CCAAGTG TAGCAAATTGATTTT TERM 350 323524 - 323538 + g 79 -3.6 -4.89966 | opp_overlap 323524 CCAAGTGTAGCAAAT TGATTT TCA GAATCA TTTGTTTTTACGTCT TERM 351 323803 - 323790 - G 79 -2.4 -5.08255 | opp_overlap 323790 ATTCGGAAAAGAAAA GTTG TTCCCG CAAC TCATTTCCAATCCCT TERM 352 323968 - 323958 - R 70 -3.2 -4.67982 | CCTGACCCAACAAAA GCAG GTC CTAC GGCAAAAATCCAAAA Rru_A0262 325601 - 324273 - | chemotaxis sensory transducer TERM 353 324575 - 324589 + g 83 -2.7 -5.1615 | opp_overlap 324573 324572, overlap 324572 324573 CGCCGATCGAAAGCG CCGCC TCGGC GACGG TTTTTTGGATATTGG TERM 354 325706 - 325682 - R 95 -7 -5.43866 | opp_overlap 325694, overlap 325683 CAACCGGGAAAAAAA TGAGGGCGCC CGACC GGCGCTCTCG GCCGGAGTTATGTCT TERM 355 325705 - 325683 - R 76 -10.5 -3.85235 | opp_overlap 325694, overlap 325682 AACCGGGAAAAAAAT GAGGGCGCC CGACC GGCGCTCTC GGCCGGAGTTATGTC TERM 356 326227 - 326212 - R 100 -9 -5.00616 | CGGCCTTTTAAAAAA GACGGA TCGG TCCGTC AAACCGCAAGCGCGG Rru_A0263 327140 - 326226 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 357 326426 - 326475 + g 73 -13.7 -3.16055 | gap 2, opp_overlap 326429, overlap 326429 326465 CCGCGAGGGTGCGCA AGACCTCGTCGATCACCGGCTCG ATCCGA CGGGCCGGT--TCGGCGAGGTCG TTGGTCCGCCGTTTG TERM 358 326494 - 326524 + g 83 -14.7 -3.64822 | gap 1, overlap 326496 GTCCGCCGTTTGAGC GCCTCGGCCAGGGC CTGG GCGCTGGCCG-GGC TTTCCGTCAACGGGT TERM 359 326496 - 326523 + g 72 -14.8 -2.78679 | overlap 326494 CCGCCGTTTGAGCGC CTCGGCCAGGGC CTGG GCGCTGGCCGGG CTTTCCGTCAACGGG TERM 360 327224 - 327178 - R 73 -10.8 -3.65353 | gap 2, overlap 327179 GCAAAGGATCCTAAA GGGCGGCG-AT-CGGCCCGGTC ACGGG GACGGGGCCGAAGGCGCCGCGC CTTAAGGGGTGGCGG Rru_A0264 329025 - 327226 - | TPR repeat-containing protein TERM 361 327527 - 327515 - G 71 -9.1 -3.84451 | TCGCCCAAACGGAAA TGGGC CCA GCCCA GGCTGTCGATGATGT TERM 362 327771 - 327747 - G 73 -6.3 -4.41348 | overlap 327748 CCCGGCCGAAATAAA CCGCCCAATGC CGG GGATCGGGCGC CCCCATGCGGGCGAT TERM 363 328454 - 328474 + g 71 -3.1 -4.57569 | opp_overlap 328437, overlap 328459 GCGCCATGCAAGGCG CGCAGGGTG GCA TAGCCGGCG TTTTTGGAAAGCTCG Rru_A0265 330782 - 329145 - | electron-transferring-flavoprotein dehydrogenase Rru_A0266 330933 - 331880 + | Phage SPO1 DNA polymerase-related protein TERM 364 332897 - 332908 + G 72 -7.2 -4.25104 | CTGCGCGCCCTTGGC CGGC CGAT GCCG TTTTCCTGGAACGCC TERM 365 333113 - 333160 + G 90 -17.7 -3.59979 | gap 1 GGCCTGCCCACTCTG GCGCTCGACATCGGCCGCACCG ATCCC CGGGCCGGC-GATGTCGCGCGC TTTCCCCTGCCGCCC TERM 366 333309 - 333359 + G 79 -6.7 -4.63218 | gap 2 TGATGCCGGCCACCG CCTCGCATGTCGCCGGCGACCGGGC TTT GGCCGAT-GCCGAAGGCG-GCGAGG TTTTGTTCCAGCCGA Rru_A0267 331970 - 333694 + | lytic transglycosylase, catalytic Rru_A0268 333734 - 334282 + | molybdopterin binding domain-containing protein TERM 367 334311 - 334284 - f 76 -10.6 -3.78775 | gap 1, opp_overlap 334292, overlap 334263 CGGCCGATCATTAAA TCCGCCCGCCCCA GGG TGGAGCGG-CGAA AAAGGCGTACCTTCC TERM 368 334292 - 334345 + F 100 -21.7 -3.04461 | opp_overlap 334263 334284 CATTAAATCCGCCCG CCCCAGGGTGGAGCGGCGAAAAAGG CGTA CCTTCCCTGCCGCTTCGCCCTGGGG TGTTGAGCGTCGATC TERM 369 335364 - 335330 - g 70 -9.9 -3.64822 | gap 1 ATCCGCCGACGCAAA CG-GGCAGCGACGCCG AGGA CGCCCTCGCCGCCACG CGGGAACGCCGGGTG Rru_A0269 334588 - 335469 + | hypothetical protein apaG 335633 - 336040 + | ApaG folE 336213 - 336917 + | GTP cyclohydrolase I TERM 370 336931 - 336962 + F 70 -4.2 -4.56597 | overlap 336933 GAGGCGAGACTTGTG TTCGTCAGGCGGGG ACGA CCCCGCTGGAGGTG TTTTTCAGGCGGGGA TERM 371 336933 - 336960 + F 73 -9 -3.90048 | overlap 336931 GGCGAGACTTGTGTT CGTCAGGCGGGG ACGA CCCCGCTGGAGG TGTTTTTCAGGCGGG TERM 372 336981 - 337019 + F 85 -6.1 -5.01535 | gap 2, overlap 336981 336985 TTCAGGCGGGGACGA CCC-CGCCATGGAT-CC AGAGGGA GGCATCCATGGCTTGGG TTTTTCTGGTTCTCG Rru_A0272 337010 - 337321 + | small multidrug resistance protein TERM 373 337335 - 337354 + T 82 -12.8 -3.57462 | opp_overlap 337335 GAGGCGATAAAAAAA GGGGGCCT TCGC GGGCCCCC TTTGCCGGTGGGATC TERM 374 337354 - 337335 - T 100 -12.1 -5.626 | opp_overlap 337335 GAGGCGATAAAAAAA GGGGGCC TTCGCG GGCCCCC TTTGCCGGTGGGATC Rru_A0273 338119 - 337391 - | 3-oxoacyl-[acyl-carrier-protein] reductase Rru_A0274 339475 - 338303 - | acetyl-CoA acetyltransferase TERM 375 339542 - 339565 + r 71 -5.9 -4.31433 | gap 1, opp_overlap 339543, overlap 339543 CTTCCCTGACAATTC ACG-GGGCGG TTGCT CCGCCCACGC TTTCTTCTGGAACTC Rru_A0275 340920 - 339676 - | Alpha/beta hydrolase fold TERM 376 340945 - 340971 + H 71 -6.5 -4.18018 | gap 1 CGGCGTTGACACGCT CTGCGGCC-TCG GTCA CGAAGGCCACGG TTTTGGATAACGCGG TERM 377 341666 - 341656 - g 75 -3.2 -4.72272 | CGGGGTGATGAAAAA CACC CTG GATG GCCTGTTCCCCTTCA Rru_A0276 341285 - 341890 + | polyhydroxyalkanoate synthesis repressor PhaR TERM 378 342112 - 342133 + G 84 -7.2 -4.72272 | GCGGAGTCCGCCCGT CGTCCCGC CGGTTC GCGTGACG TTTTTGGTGACCAGC Rru_A0277 342065 - 342571 + | hypothetical protein TERM 379 342603 - 342620 + F 77 -3.4 -5.0133 | GCGTGAGTCCGAAGT GTGGCA AGCGAG TGTCAC TTTTTTGCCACAATA TERM 380 342721 - 342733 + F 78 -4.7 -4.74103 | opp_overlap 342703 GGTGCCTGGCTCAAC CCGCG ATC CACGG TTTTTCGGTTCCGGC TERM 381 343163 - 343145 - g 70 -10.2 -3.68886 | overlap 343135 343139 ACGAAGCCAGCGAAA CGCTGTCG CCG CGTCAGCG GATGTGCCTGGAACT Rru_A0278 342868 - 343305 + | XRE family transcriptional regulator TERM 382 343356 - 343314 - T 89 -16.2 -3.32844 | opp_overlap 343314 343315 CGCCTGACCTGATAA CGGGCACGGCTGTCAGGCCC CTC GGGCCTGACAAACGCCGCCG CTTAATCCCATTCGG TERM 383 343373 - 343409 + T 85 -2.2 -5.41143 | gap 2 TTAATCCCATTCGGC CCGCACCTGCGGGTCGTC CTC GATGGCCAG-ACG-GCGG TTTTTTTCGCGCCTC Rru_A0279 344485 - 343358 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 384 344602 - 344552 - R 85 -15.8 -3.21099 | gap 1, opp_overlap 344539 344562, overlap 344555 344562 TTGCTTGACGATCAA GATCTTAGAACGATGTGCGGGAA TCAGAT TTCCCGCATATCGTTCTAA-ACC GGTTCGATATCACCC TERM 385 344600 - 344555 - R 85 -18.6 -2.50016 | opp_overlap 344562, overlap 344552 344562 CTTGACGATCAAGAT CTTAGAACGATGTGCGGGAA TCAGAT TTCCCGCATATCGTTCTAAA CCGGTTCGATATCAC TERM 386 344593 - 344562 - R 76 -13.1 -3.37028 | opp_overlap 344562, overlap 344555 344552 ATCAAGATCTTAGAA CGATGTGCGGGAA TCAGAT TTCCCGCATATCG TTCTAAACCGGTTCG TERM 387 344562 - 344593 + r 86 -15.3 -3.30159 | opp_overlap 344562 344555 344552 ATCAAGATCTTAGAA CGATGTGCGGGAA TCAGAT TTCCCGCATATCG TTCTAAACCGGTTCG Rru_A0280 345723 - 344596 - | queuine tRNA-ribosyltransferase Rru_A0281 346757 - 345720 - | queuosine biosynthesis protein TERM 388 346776 - 346799 + r 74 -7.3 -4.37067 | overlap 346779 TTTCAAGGTCGTTTT CTGGCCCCC GGAGAA GGGGGGCGG TTTTCCTGGTCTTTC TERM 389 346895 - 346862 - R 93 -11.6 -4.4267 | opp_overlap 346842 346841, overlap 346856 CGGCAAAAGGGAAAA CCCATATCCGCCGG CGTTTT CCGGCGGACGAGGG GACATCGGTCCGTCG Rru_A0282 347511 - 346930 - | hypothetical protein TERM 390 347589 - 347539 - H 85 -12.6 -3.70902 | gap 1, opp_overlap 347544 GGGGCCAGAGGTAAA GACGAGTGGCGCGA-CGGATCCC TGGCCT GGGATCGGGTCACGCCCCTGGTC TCGCCTGGCTGCCGG Rru_A0283 347792 - 348295 + | hypothetical protein TERM 391 348375 - 348359 - g 81 -5.1 -4.74706 | TCCAATATTCAAAAA CACAGTC GGG GAGTGTG CGCCGTGGTCCAGTC TERM 392 349647 - 349704 + G 100 -19.1 -4.0274 | gap 1 ATGGCCTGCCCGCCG CCATCGCC-GCCAAGGTCGTCGCCCCCC GGC GGGTGGTGGTGGCCTTCGCCGGCGACGG TTGTTTCCTGATGAA TERM 393 349914 - 349935 + G 72 -7.1 -4.25283 | GCTTGCGCGTGCGCC GCACGGCCG AATT CGGCCCGGC TTTTGATCAGGCCCT Rru_A0284 348329 - 350059 + | acetolactate synthase 2 catalytic subunit TERM 394 351198 - 351175 - g 73 -11 -3.6608 | opp_overlap 351140 351197 AGGAGGCCATGGAAA CGGCTTTGGC GCGG GCGAAAGCCG ATGGCGGGATCGTTC Rru_A0285 350136 - 351656 + | aldehyde dehydrogenase Rru_A0286 351666 - 352466 + | hypothetical protein TERM 395 352901 - 352942 + G 81 -11.4 -3.92869 | gap 1 CGGGGTCGCCGAGGC CCTGGCGCGGGGTCCGGCG GAAGG CGA-GGGCGCCGCGCCCGG TTTGTGGCTCGATCA TERM 396 353215 - 353167 - g 70 -11 -3.53012 | opp_overlap 353167 353165 353171 GGCGCTTGCGCGAAA TCCAGGGCGATCCCGA-AGCCGCC CAT GGCGCCTATCTGG-CCGCCCTTGA TCTTTACGAGGGGAT TERM 397 353540 - 353579 + G 72 -13.6 -3.14132 | gap 1, opp_overlap 353546 GGGGCGCGAGCGCCC CAACGAGG-CGCTCGCC CATTGGC GGCGGGCGACCTCGCTG TTGATCGAGGCCGGC Rru_A0287 352515 - 353675 + | hypothetical protein Rru_A0288 354522 - 353698 - | 2,5-didehydrogluconate reductase TERM 398 354571 - 354613 + r 79 -12.1 -3.44146 | gap 2, opp_overlap 354576, overlap 354576 AACCCTGACCCTTGA GCAAATC-CCG-AGCGCCCTG TTT CAGGGCGCGACGACGATTTGC TTCGTTATCAAGACC TERM 399 354713 - 354698 - R 71 -8.2 -4.13014 | TTCAGACTCCTAAAA CCGGCG GTCG CGCCAG CCTTCGACCAGATGG Rru_A0289 355840 - 354692 - | NUDIX hydrolase TERM 400 355267 - 355242 - G 71 -9.7 -3.794 | gap 1 TGCCAATTGAGCAAA GCCTGGGC-ATG GGC CATCGCCCCGGC CATGGCGTCCTCGAC TERM 401 355332 - 355315 - G 71 -3.3 -4.59853 | gap 1 GCAACTCGCGAAAAA CCG-GGGC GCT GCCATCGG CGAGACGCAGATCGG TERM 402 355880 - 355867 - H 77 -3.7 -5.00895 | CGCACCAGAGAAAAA GGGGC GCGC GCCGC AGGGGCAAGGACGAC Rru_A0290 356090 - 356974 + | auxin efflux carrier TERM 403 357039 - 357010 - T 100 -20.7 -4.72272 | overlap 357028 357029 CGCGGGCATGAAAAA GCCGGGGGCCGCT CGAA AGCGCCCCCCGGC CCTGACCGCCGAGGC Rru_A0291 357428 - 357093 - | hypothetical protein Rru_A0292 357876 - 357574 - | integration host factor, beta subunit TERM 404 357740 - 357728 - G 75 -4.7 -4.65895 | overlap 357736 CGTTTCACGGAAAAA GCGCC AAA GCCGC GCAATTCGACCCTGT TERM 405 358047 - 358022 - R 100 -23.3 -5.24129 | opp_overlap 358015 GCGGCGCACAAAAAA GGCGCCGCCGG AGAT CCGGCGGCGCC CCTCGCGTCCCTTGC rpsA 359799 - 358078 - | 30S ribosomal protein S1 TERM 406 359897 - 359876 - R 91 -4.3 -5.46698 | gap 1, overlap 359868 359877 TTGAAAACGAAAAAA TCCGTACCCC ACC GGGGC-CGGG TCGAGTCGCCATGGT TERM 407 359905 - 359924 + r 80 -10 -4.04719 | GGGCCGGGTCGAGTC GCCATGGT CACG GCCATGGC TTTGTGGTCTGTCGT TERM 408 360042 - 359990 - R 100 -17 -3.96216 | gap 1 TCGTTACGCAAACAA GCGCTCGGGCGTTCGCTCCCTCCGC CGGG GCGGATG-AGCGGACACCGGAACGC CAAGACGATCCGCCA Rru_A0294 360815 - 360174 - | cytidylate kinase TERM 409 360866 - 360842 - R 93 -15.7 -3.5936 | overlap 360843 TTGAAAGCGTCGAAA TCCCCCCTTGG AGG CCAAGGGGGGC GCCCGGTCCCGCCTG TERM 410 360865 - 360843 - R 88 -19.2 -2.75294 | overlap 360842 TGAAAGCGTCGAAAT CCCCCCTTGG AGG CCAAGGGGGG CGCCCGGTCCCGCCT Rru_A0295 362253 - 360898 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 411 362472 - 362502 + H 70 -10.2 -3.55071 | overlap 362473 362490 362493 AGCGCTTTTCCCGTG TCGGCGCCCTGGCG CCC CGCCGGCCCGCCGC TTTCGGGCGGTCTGG TERM 412 362473 - 362501 + H 73 -13.7 -2.72829 | overlap 362472 362490 362493 GCGCTTTTCCCGTGT CGGCGCCCTGGCG CCC CGCCGGCCCGCCG CTTTCGGGCGGTCTG Rru_A0296 362552 - 362881 + | hypothetical protein TERM 413 362935 - 362882 - T 91 -18.8 -3.23692 | gap 1, opp_overlap 362887 362888, overlap 362883 362917 362918 GACGAGGACGAGTAA GCGTCTGGCCCGCCGGCCGTTTCCT GGCGA AGGAA-CGGCCGGCGGGCCGCTGGC CAACCGGGGCGCCGC TERM 414 362933 - 362883 - T 88 -19.8 -2.53894 | gap 2, opp_overlap 362887 362888, overlap 362882 362917 362918 ACGAGGACGAGTAAG CGTCTGGCCCGCCGGCCGTTTCCT GGCGA AGGAA-CGGCCGGCGGGCC-GCTG GCCAACCGGGGCGCC TERM 415 363216 - 363193 - T 100 -15.2 -4.58663 | opp_overlap 363193 ACCAGTTCTTAAAAA CCCGTCGCGG GATC CCGCGGCGGG TTTTTTCTTTACCAA TERM 416 363193 - 363216 + T 100 -17.4 -5.63517 | opp_overlap 363193 ACCAGTTCTTAAAAA CCCGTCGCGG GATC CCGCGGCGGG TTTTTTCTTTACCAA TERM 417 363267 - 363247 - T 90 -5.5 -5.24129 | GCGCCCGATAAAAAA GAAAAAACC GCC GATTTTCTC TTGCCCGGAGGCGCG TERM 418 363494 - 363471 - T 100 -15.2 -4.58663 | opp_overlap 363471 ACCAGTTCTTAAAAA CCCGTCGCGG GATC CCGCGGCGGG TTTTTTCTTTAGAGC TERM 419 363471 - 363494 + T 100 -17.4 -5.63517 | opp_overlap 363471 ACCAGTTCTTAAAAA CCCGTCGCGG GATC CCGCGGCGGG TTTTTTCTTTAGAGC Rru_A0297 364531 - 363503 - | putative esterase TERM 420 364387 - 364363 - G 73 -10.6 -3.68351 | opp_overlap 364366, overlap 364366 CGTGCAGGAGGTAAA GCACCGGCCA GCCGG CGGCCGGGGC CGGTCCTTCGGGAAC Rru_A0298 366167 - 364668 - | aldehyde dehydrogenase (acceptor) TERM 421 365164 - 365201 + g 93 -9.8 -4.66609 | gap 2, opp_overlap 365184 365185, overlap 365166 GTCGCGGGGTCAAGC GGCG-GGCCGGGG-CGCC AGAA GGCGGCTTCGGCCACGAC TTTTTCGATCACCTC TERM 422 365322 - 365283 - G 73 -9 -4.00042 | opp_overlap 365286, overlap 365286 GCCCTGATTAAAGAA GATCGCCGAGGCCGCCGC CTGG GCGGCCGCCGTGGTGTTC TTGCACGAGGCCAGC TERM 423 365286 - 365319 + g 78 -13.7 -3.61398 | opp_overlap 365283 365286 CTGATTAAAGAAGAT CGCCGAGGCCGCCGC CTGG GCGGCCGCCGTGGTG TTCTTGCACGAGGCC TERM 424 365883 - 365910 + g 77 -7.1 -4.56597 | GTCGCGATGAGCCTC GATCC-GCTCGGC GAAG GCC-AGCAGGATC TTTTTGCGCGCCGCC Rru_A0299 366429 - 367151 + | glutamine amidotransferase class-I TERM 425 367127 - 367155 + F 91 -5.4 -5.42259 | overlap 367118 CATCGCCGACGCGCT GCGCC-GTTTCATC GCA GA-GAAATAGGCGC TTTTTTTACCCCTCC Rru_A0300 367184 - 368038 + | aminotransferase TERM 426 368112 - 368099 - f 70 -3.1 -4.70169 | gap 1, overlap 368100 TGATAGTGAAGAAAA TC-CCG AAC CGGAGA TCCGCCGATGGCCAC Rru_A0301 368120 - 368533 + | alkylhydroperoxidase AhpD core TERM 427 368544 - 368580 + F 100 -17.3 -4.91109 | opp_overlap 368544 368543 368541, overlap 368546 AATAGCGCGAAAGAC CCTTGGGGAGAGCCGGC GGC GTCGGTTCTCCCCGATG TTTTTGTGGTCGGCA TERM 428 368546 - 368578 + F 100 -18.5 -4.08042 | opp_overlap 368544 368543 368541, overlap 368544 TAGCGCGAAAGACCC TTGGGGAGAGCCGGC GGC GTCGGTTCTCCCCGA TGTTTTTGTGGTCGG Rru_A0302 368703 - 369593 + | hydrogenase accessory protein HypB TERM 429 369614 - 369654 + F 77 -14.6 -2.78216 | gap 1, opp_overlap 369610 369608 369628, overlap 369611 GGTCACTAAGACGGG GAGGCGCGCGGAAACC-CG GGAT CGAGGGGTCCGCGCGCCGC TGGTTCATCGGGCTA TERM 430 370912 - 370937 + G 71 -2.7 -4.65933 | gap 1, opp_overlap 370906, overlap 370898 370904 370912 370913 370915 GGGAAGCGAGTCGCA T-CATTGATGAG ACG CTTGTCAATGCA TTTATTTTGACGGTC TERM 431 371263 - 371234 - g 95 -2.7 -5.54894 | opp_overlap 371242, overlap 371235 AATCGATGAAAAAAA CCACTGGGTTAGG ATGC CCCATCCCGATGA TTGTCCATGTGGAAA Rru_A0303 370032 - 371339 + | hypothetical protein Rru_A0304 371964 - 371674 - | XRE family transcriptional regulator TERM 432 371970 - 371989 + r 76 -10 -3.72576 | AGCTGGCCATGATGT CTCTCCTC GGAT GGGGAGAG TTTACTCGAAAAGAG Rru_A0305 373040 - 372015 - | hydrogenase expression/formation protein HypE TERM 433 373108 - 373059 - R 74 -11.1 -3.53012 | gap 1 TGGGGTCTCCGTAAA GGCG-TGGCGGCGCGGCGACCGCC ATA GGCGTAAGCCGCGGCGCAGGCGCC CTCGGACGAAACCAT Rru_A0306 374197 - 373037 - | hydrogenase formation HypD protein Rru_A0307 374424 - 374194 - | hydrogenase expression/formation protein (HUPF/HYPC) Rru_A0308 376731 - 374425 - | hydrogenase maturation protein HypF TERM 434 374783 - 374823 + g 76 -14.8 -3.14344 | gap 2 TCGGCGGCGATGCGC GGGGAGGCGGCCA-G-GGCT TCC AGCCGCATCGCCGCTTCCCC TTCGTAGCGGACCTC Rru_A0309 377224 - 377862 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 435 379108 - 379089 - g 79 -10.6 -4.02132 | overlap 379081 CTGGAAACCGAGAAA CCGGCGCG CTAC CGCGCCCG GATCGAGAACCTGCC Rru_A0310 377880 - 379268 + | ferredoxin hydrogenase Rru_A0311 379347 - 380279 + | formate/nitrite transporter Rru_A0312 380440 - 380853 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 436 381488 - 381444 - g 81 -12.8 -3.8046 | gap 1, opp_overlap 381442, overlap 381438 381439 GCCAAAAACCTGAAA GGCATCGCCGTTCGCGGCACC CGGG GGTTCCGCGT-CGCCGATACC CATGGCTTCGTCGAA TERM 437 382008 - 382031 + G 78 -10.2 -4.03234 | overlap 381990 GCGGTGGCCGAGGCC GCCGGTCTGT GCCC GCTGACCGGC TTTGTCTGCGACGCC Rru_A0313 380853 - 382136 + | aldehyde ferredoxin oxidoreductase Rru_A0314 382129 - 383646 + | hydrogenase 4 subunit D Rru_A0315 383654 - 385678 + | NADH dehydrogenase (quinone) Rru_A0316 385692 - 387377 + | NADH-ubiquinone oxidoreductase Rru_A0317 387380 - 388282 + | respiratory-chain NADH dehydrogenase, subunit 1 Rru_A0318 388291 - 388818 + | 4Fe-4S ferredoxin, iron-sulfur binding Rru_A0319 388811 - 389476 + | NADH-ubiquinone oxidoreductase, chain 4L TERM 438 390900 - 390913 + G 75 -9.5 -4.09685 | ACTTTTGACGGCTCC GCCGG CACC CCGGC TTTTGACGGCTCCGC Rru_A0320 389490 - 391085 + | NADH dehydrogenase (quinone) Rru_A0321 391105 - 391626 + | NADH dehydrogenase (ubiquinone), 20 kDa subunit TERM 439 391929 - 391948 + G 70 -2 -4.65916 | opp_overlap 391932, overlap 391931 TGGCCATGCCGGAAC GCATCAGC TGCC GCTGACCC TTTTCTTCCAGTACC Rru_A0322 391636 - 392100 + | peptidase M52, hydrogen uptake protein Rru_A0323 392138 - 392668 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 440 393434 - 393421 - g 70 -2.4 -4.63218 | opp_overlap 393421 GCTGCTTGAAGAAAA CCTT TACGAC AAGG ATTTCGTGGCGAAGT Rru_A0324 392708 - 394849 + | formate dehydrogenase alpha subunit Rru_A0325 394969 - 395976 + | molybdenum cofactor biosynthesis protein TERM 441 397243 - 397263 + G 73 -11.1 -3.65351 | ACAATATCGGCTTGC TGGGCGAGG TCG CCTCGCGCA TTTGCATCGCCGTGG TERM 442 397646 - 397629 - g 100 -9.8 -4.72272 | TTCGGCCATGAAAAA GGCGCC TTCACC GGCGCC ATCGCCCAGAAGTCC Rru_A0326 396246 - 398447 + | NifA subfamily transcriptional regulator TERM 443 399294 - 399321 + G 70 -11.2 -3.55801 | overlap 399295 AGGTGCTGCGCGACG ACGGGCGGGTGC TGCT GCATCTGCCCGA TTTCGAACGCTTCAT TERM 444 399295 - 399320 + G 72 -14.7 -2.73159 | overlap 399294 GGTGCTGCGCGACGA CGGGCGGGTGC TGCT GCATCTGCCCG ATTTCGAACGCTTCA TERM 445 399350 - 399361 + G 73 -3.6 -4.59109 | ATGGGGGCGGCCCGC GGGC ACCA GTCC TTTTTCCGCGATGTC Rru_A0327 398582 - 400444 + | periplasmic sensor Signal transduction histidine kinase Rru_A0328 400635 - 401267 + | lysine exporter protein LysE/YggA TERM 446 401448 - 401408 - f 100 -13.9 -4.42619 | opp_overlap 401413, overlap 401410 401413 CAAGACGGCATAAAA GAGTACGGGGCGCGGTCCA ACA TGGATCGCGCCCCGTTTTT GAAGACCACCGGTCC TERM 447 401446 - 401410 - f 95 -16.5 -3.81279 | opp_overlap 401413, overlap 401408 401413 AGACGGCATAAAAGA GTACGGGGCGCGGTCCA ACA TGGATCGCGCCCCGTTT TTGAAGACCACCGGT TERM 448 401413 - 401443 + F 100 -24.8 -4.56597 | opp_overlap 401410 401408 401413 CGGCATAAAAGAGTA CGGGGCGCGGTCCA ACA TGGATCGCGCCCCG TTTTTGAAGACCACC TERM 449 401443 - 401413 - f 100 -22.6 -2.98387 | opp_overlap 401413, overlap 401410 401408 CGGCATAAAAGAGTA CGGGGCGCGGTCCA ACA TGGATCGCGCCCCG TTTTTGAAGACCACC Rru_A0329 401598 - 401993 + | hypothetical protein Rru_A0330 403063 - 402053 - | LysR family transcriptional regulator Rru_A0331 403118 - 404086 + | hypothetical protein TERM 450 404453 - 404505 + G 81 -14.7 -3.54424 | ACCGAAACCATGGTC TGGTTGTTCTGGCAGGTCGGCGGCC TGG GGCCGATGGCCGGTCAGGCCCACCA TTTCCGCCAATACGC Rru_A0332 404156 - 404845 + | glutathione S-transferase-like protein TERM 451 404972 - 404933 - T 100 -21.5 -3.53012 | gap 1, opp_overlap 404935 404936, overlap 404936 CCCTTTTGGCGGAAA CGACCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGG-CT TTGACACGCGGTGCT TERM 452 404935 - 404971 + T 100 -25.2 -3.53444 | opp_overlap 404933 404936, overlap 404936 CTTTTGGCGGAAACG ACCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGGC TTTGACACGCGGTGC TERM 453 404936 - 404970 + T 100 -28.7 -2.71924 | opp_overlap 404933 404936, overlap 404935 TTTTGGCGGAAACGA CCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGG CTTTGACACGCGGTG TERM 454 404970 - 404936 - T 100 -28.7 -2.90496 | opp_overlap 404936 404935, overlap 404933 TTTTGGCGGAAACGA CCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGG CTTTGACACGCGGTG Rru_A0333 405480 - 405004 - | Ferritin and Dps Rru_A0334 405956 - 406918 + | LysR family transcriptional regulator Rru_A0335 407067 - 407606 + | YbaK/prolyl-tRNA synthetase associated region TERM 455 407849 - 407835 - f 75 -8.5 -4.2349 | opp_overlap 407836 TTTTGACAGGCAAAA GCGGC GCTAG GCCGC CCTTGCCTGTGGCGG TERM 456 407836 - 407875 + F 79 -9.3 -4.21827 | gap 1, opp_overlap 407835 TTTGACAGGCAAAAG CGGCGC-TAGGCCGCC CTTGCCTGT GGCGGCTTGTGTGCCG TTTTCCCGTCTTTAA TERM 457 408361 - 408394 + G 93 -10.9 -4.42062 | gap 1, opp_overlap 408353, overlap 408373 408377 GGCAAATGGGCGCGC GCC-ATCGCCGGCGTG CTG CGCGTCGGCGGCCGGC TTTATTTCGCCGATA Rru_A0336 407932 - 408774 + | hypothetical protein TERM 458 408805 - 408831 + T 95 -5.1 -5.60993 | opp_overlap 408805 408811, overlap 408811 AACAGCATCAGAACA GCAAAAGCGGG TCTGC CCCCCTTTTTC TTTTTTTCTCGGGAC TERM 459 408811 - 408825 + T 100 -2.7 -5.89659 | opp_overlap 408811 408805, overlap 408805 ATCAGAACAGCAAAA GCGGG TCTGC CCCCC TTTTTCTTTTTTTCT Rru_A0337 409318 - 408932 - | transcriptional regulator TERM 460 409285 - 409297 + g 90 -4.1 -5.48787 | overlap 409274 AGCCCTTACCTTCGG GTGAG TAC CTTAC TTTTTTGTCTGTTCT Rru_A0338 409373 - 409699 + | hypothetical protein Rru_A0339 409696 - 410487 + | short chain dehydrogenase TERM 461 410608 - 410634 + F 86 -13.7 -3.53012 | opp_overlap 410601 GATCAAGATCTGAGA GCGATGAGCGG ATTCC CCGCTCACCGC TTTAGGGGAAAACGG TERM 462 410830 - 410875 + F 84 -11.2 -4.13767 | opp_overlap 410837, overlap 410831 AATGTCGGAGAGCGC CCAATTATCCCGTCAGAAGC TCTCGT GCTTCTGACGGGATAGGCGA TTTTGGGCTGAGACA TERM 463 410831 - 410874 + F 80 -14.7 -3.08046 | opp_overlap 410837, overlap 410830 ATGTCGGAGAGCGCC CAATTATCCCGTCAGAAGC TCTCGT GCTTCTGACGGGATAGGCG ATTTTGGGCTGAGAC TERM 464 410868 - 410837 - f 88 -18.9 -2.72049 | opp_overlap 410831 410830 GAGAGCGCCCAATTA TCCCGTCAGAAGC TCTCGT GCTTCTGACGGGA TAGGCGATTTTGGGC TERM 465 412075 - 412031 - g 85 -5.3 -5.01732 | opp_overlap 412053, overlap 412019 412033 AAGGCCCGCAAAAAA GCCGGCGCTGCGGTGGCGGCC ATT GGCCTCGATCCCCGCGCCCTC CAGCGTAAGGCGGCG Rru_A0340 411275 - 413932 + | CRISPR-associated helicase Cas3 family protein protein TERM 466 414018 - 414031 + F 70 -3.1 -4.59081 | gap 1, overlap 414028 GTGTCGAGACGGTCT TC-CGG TTG CCGCGA TTTTCTGTCGCTTTC TERM 467 414795 - 414768 - g 71 -3.3 -4.62471 | gap 1, opp_overlap 414769 414774, overlap 414769 CCGAAGTCGGAAAAA GCCATGGCCCCC CGGCC GGGGGCT-TGGT TTCGCAGGGATGTGG TERM 468 414774 - 414790 + G 70 -10.8 -3.51232 | opp_overlap 414769 414768, overlap 414769 TCGGAAAAAGCCATG GCCCCC CGGCC GGGGGC TTGGTTTCGCAGGGA Rru_A0341 414192 - 415475 + | CRISPR-associated Cse1 family protein TERM 469 415604 - 415618 + G 79 -4.9 -4.72486 | overlap 415591 GACGGCTTTGACCGG GTGGC CGATA GCCGC TTTTTCCCCTTTCTG TERM 470 415708 - 415726 + G 74 -5.2 -4.56597 | CTTCGCCAAGGAGCT GTTTTCGG CGG CCGAGGGC TTTTTCAAAGCGGCG Rru_A0342 415472 - 415879 + | hypothetical protein Rru_A0343 415869 - 416432 + | hypothetical protein Rru_A0344 416445 - 417590 + | CRISPR-associated Cse4 family protein TERM 471 417876 - 417929 + G 70 -11.6 -3.41051 | overlap 417877 GACGACCTGGGGCGA GCCCGAGGGGC-GCGATGGGGCCAGT TACG GCGCGCCCCATCGCCGCCGC-CGGGA TTATCATGGCGATGC TERM 472 417877 - 417928 + G 71 -15.1 -2.64416 | overlap 417876 ACGACCTGGGGCGAG CCCGAGGGGC-GCGATGGGGCCAGT TACG GCGCGCCCCATCGCCGCCGC-CGGG ATTATCATGGCGATG Rru_A0345 417583 - 418332 + | CRISPR-associated Cas5e family protein TERM 473 418477 - 418512 + G 89 -16.8 -3.59262 | TCCTTCAGCCGTTCC GCTTGATGGTGGCGCC CAAT GGCGCCACCGGCACGC TTTACGCCTATACCC TERM 474 418676 - 418689 + G 75 -9.5 -4.07568 | overlap 418671 TGACCTGCGGGCGCG GCCGG TTCG CCGGC TTTTGAAACCGGCCG Rru_A0346 418329 - 419060 + | CRISPR-associated Cse3 family protein Rru_A0347 419071 - 419952 + | CRISPR-associated Cas1 family protein Rru_A0348 419952 - 420275 + | CRISPR-associated Cas2 family protein TERM 475 422408 - 422396 - T 73 -10.5 -3.58365 | CAGGACAGCACATAA GCGGC CCC GCCGC GGTTCCCCCACACCC Rru_A0349 423035 - 422688 - | hypothetical protein Rru_A0350 423388 - 423032 - | helix-turn-helix protein, CopG TERM 476 424039 - 424027 - H 91 -4.9 -5.5943 | AAAGCACCAAAAAAA GAAAA CGG TTTTC AGCACAATCCCAACA TERM 477 424380 - 424369 - H 71 -7.2 -4.27259 | TATATAGAGTTAAAA CGCG CGCG CGCG TTACACTCTCAAAAA Rru_A0351 424643 - 425245 + | hypothetical protein Rru_A0352 426108 - 425278 - | hypothetical protein TERM 478 425506 - 425530 + g 71 -9.1 -3.78934 | opp_overlap 425481 425478 425503, overlap 425508 GTCTTCGCGAAAGTT GCGCAGCGGCG ATG CGCTGCCGCTC TTCTTGTGAAGCACC TERM 479 426193 - 426161 - R 100 -9.8 -5.14563 | opp_overlap 426154, overlap 426162 TCGGCTACGAAAAAA TCGCCCTGCGCC GTACGATCT GGCGCAAGGCGG GACGTTCTTTCACGC TERM 480 426192 - 426162 - R 88 -13.3 -3.68256 | opp_overlap 426154, overlap 426161 CGGCTACGAAAAAAT CGCCCTGCGCC GTACGATCT GGCGCAAGGCG GGACGTTCTTTCACG Rru_A0353 426539 - 426330 - | Phage transcriptional regulator, AlpA Rru_A0354 428680 - 427472 - | Phage integrase TERM 481 428402 - 428423 + g 79 -8.6 -4.4078 | overlap 428390 428388 428404 TGTCTCCGCATCCTT GACGCGGG CCTTGT CCCGCGCC TTTTCCTTGGCCGGA TERM 482 428910 - 428945 + r 71 -7.5 -4.2679 | opp_overlap 428919, overlap 428919 AGTGCCGGACGCAAT CACAAAAAAGCCCGC ATTTAC GCGGGCTTAGATGTG TTTTCGTGCCACTTG TERM 483 428936 - 428919 - R 100 -10.5 -5.37345 | opp_overlap 428919 428910 CGCAATCACAAAAAA GCCCGCA TTTA CGCGGGC TTAGATGTGTTTTCG guaA 430563 - 428986 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 484 430695 - 430664 - R 93 -16 -3.53012 | opp_overlap 430671 430681, overlap 430665 430671 GCGGCGGCTGGGAAA CGAAAAAGGACCCC GATC GGGGTCCTTTTCCA GGAAAATCGTCCTCG TERM 485 430694 - 430665 - R 84 -17.3 -2.71712 | opp_overlap 430671 430681, overlap 430664 430671 CGGCGGCTGGGAAAC GAAAAAGGACCCC GATC GGGGTCCTTTTCC AGGAAAATCGTCCTC TERM 486 430688 - 430671 - R 100 -12.7 -4.98531 | opp_overlap 430671 430681, overlap 430665 430664 CTGGGAAACGAAAAA GGACCCC GATC GGGGTCC TTTTCCAGGAAAATC TERM 487 430671 - 430688 + r 89 -12.7 -4.07885 | opp_overlap 430671 430665 430664, overlap 430681 CTGGGAAACGAAAAA GGACCCC GATC GGGGTCC TTTTCCAGGAAAATC Rru_A0356 431936 - 430719 - | isocitrate dehydrogenase TERM 488 432072 - 432125 + r 93 -16.2 -3.65812 | opp_overlap 432069, overlap 432075 CGGCGCAAGGGATCT G-ATGGGTGGAGCGGTGGGCGTGAAA CCTG TTTCGCGCCCACCACGCCA-CCATAC TTATCTTGAAGCAAA TERM 489 432075 - 432122 + r 95 -20.6 -2.94293 | opp_overlap 432069, overlap 432072 CGCAAGGGATCTGAT GGGTGGAGCGGTGGGCGTGAAA CCTG TTTCGCGCCCACCACGCCACCA TACTTATCTTGAAGC Rru_A0357 432777 - 432181 - | hypothetical protein TERM 490 432358 - 432385 + g 72 -7 -4.25104 | opp_overlap 432358 432373 432381 CAGCGGGTCCCAATA GCCGTTGATATT CAAG AAAATCACCGGC TTTTCATGCAGGCCC Rru_A0358 433519 - 432860 - | Heme oxygenase TERM 491 433364 - 433315 - G 78 -14.9 -3.28712 | overlap 433350 433352 CGGCGGGGGCGAGAA CCAGCCGCTCGGCCGCCCGGTGG AAGG CCAGGAAACAGCCGAGCAGCCGG CCATAGGCCTCGGCC TERM 492 433564 - 433539 - R 100 -16.9 -3.53224 | GAGTCTCCTTGGAAA GCCCGAGGCCT TGGC AAGCCTCGGGC TTGGGCAGGCGTCAG Rru_A0359 434241 - 433576 - | class II aldolase/adducin-like mtnA 435413 - 434241 - | methylthioribose-1-phosphate isomerase TERM 493 435454 - 435436 - R 76 -7.3 -4.57569 | opp_overlap 435440 TCATCCTTGTAAAAA CCGCCCC CAAGC GGGGTGG ATTAGCCCAGCACCC Rru_A0361 436340 - 435456 - | 5'-methylthioadenosine phosphorylase TERM 494 436489 - 436464 - R 100 -19 -5.4505 | opp_overlap 436464 GCGGCGAATAAAAAA CGGCCGCCGG TGGGGG CCGGCGGCCG TTTAGCGCAGGATGG TERM 495 436464 - 436489 + r 100 -19.7 -3.53444 | opp_overlap 436464 GCGGCGAATAAAAAA CGGCCGCCGGT GGGG GCCGGCGGCCG TTTAGCGCAGGATGG Rru_A0362 437339 - 436521 - | cytochrome c1 TERM 496 436939 - 436971 + g 77 -13.4 -3.50853 | gap 2, opp_overlap 436925, overlap 436939 AGCGACAGGTCGGGC GG-CGCCGCC-CCGCC ATT GGCCGCGGCGGCGGCC TTGTCGTTGGCGAAG TERM 497 437370 - 437417 + r 72 -11.8 -3.28712 | TCGTGCTGCCGTCAG GCCTGGGTCGTCACCGGGGAGC TGAT GCTCACCGGCAGCGGCTTGGGC TTCTCGAACCAACCC Rru_A0363 438583 - 437366 - | cytochrome b/b6-like Rru_A0364 439148 - 438597 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit Rru_A0365 439510 - 439992 + | tRNA/rRNA methyltransferase (SpoU) Rru_A0366 441571 - 439994 - | polynucleotide adenylyltransferase region TERM 498 440307 - 440268 - G 100 -20.8 -3.28712 | gap 1, overlap 440269 TCGGCCCGGGGATAA GGGCCCTTGCCGCGCTCGG CCG CCCAGCGCAGCAA-GGCCC TGTCGATCACCAGAT TERM 499 440307 - 440269 - G 100 -21 -2.57132 | overlap 440268 CGGCCCGGGGATAAG GGCCCTTGCCGCGCTCGG CCG CCCAGCGCAGCAAGGCCC TGTCGATCACCAGAT Rru_A0367 442495 - 441764 - | NUDIX hydrolase TERM 500 442441 - 442476 + g 82 -15.4 -3.36983 | gap 1, opp_overlap 442405, overlap 442430 GATCGGGCCCCTGGG CGGCGGATCGGGAAAGC CCC GCGC-CCCGATCCGCCG TTCCTTCGCCGTTTT Rru_A0368 443127 - 442528 - | hypothetical protein Rru_A0369 443155 - 444165 + | ATPase TERM 501 444591 - 444649 + G 78 -14.3 -3.57144 | opp_overlap 444610 GGCGGCGAACGCGTC GCCCTGGCCGGCCACGACAGCCGTCCC GGCCA GGGGCGGCCGGCGTTGTCGCGCATGGC TTTGGCCCTGGAACG Rru_A0370 444171 - 445109 + | hypothetical protein TERM 502 446014 - 446060 + G 70 -10.7 -3.53012 | gap 1, opp_overlap 446004 446005, overlap 446041 CGAAAGCGCCGTCGT GCTC-ACCCCGCCGGGCGGCGG CCAG TCGCCGCCCGCCCGCATCGAGC TTTCGCGCGACGGGG TERM 503 446358 - 446398 + G 71 -2.9 -4.62471 | overlap 446346 446352 446367 AGGGCGGCACGTTGA TCCGCTTTGCCGGTCCGCG CGG CGAGGCCGGGCTTGACGGA TTTTTGCCGGTTCGC TERM 504 446976 - 446962 - g 72 -11.4 -3.51708 | overlap 446958 GAGCGCGCAAACCAA GTGGCC CCC GGCCAC GCAAAGGCAGTCGCT Rru_A0371 445106 - 447889 + | double-transmembrane region-like Rru_A0372 447942 - 450014 + | hypothetical protein TERM 505 450033 - 450063 + F 78 -14.2 -3.17075 | overlap 450035 GGCCCTGTCTTCTGC GATCATTGTCTCTG TTT CAGAGACAATGATA TTCCATTCCGCGGGA TERM 506 450035 - 450061 + F 89 -16.8 -3.14878 | overlap 450033 CCCTGTCTTCTGCGA TCATTGTCTCTG TTT CAGAGACAATGA TATTCCATTCCGCGG Rru_A0373 450146 - 450754 + | flavodoxin/nitric oxide synthase Rru_A0374 450804 - 451733 + | hypothetical protein TERM 507 451726 - 451777 + F 95 -18.8 -3.36273 | overlap 451730 CCGCCCCTCACGGAC GGGGTTAGAGCGGCAAGCGTGAAC CTTT GTTCCCGCATGCCGCTCTAATATC TTGATATTGAAGCAA TERM 508 451730 - 451773 + F 100 -22.6 -3.18768 | overlap 451726 CCCTCACGGACGGGG TTAGAGCGGCAAGCGTGAAC CTTT GTTCCCGCATGCCGCTCTAA TATCTTGATATTGAA Rru_A0375 451848 - 452543 + | Pirin-like Rru_A0376 453287 - 452571 - | putative two-component response-regulatory protein YehT TERM 509 452640 - 452611 - G 70 -9.9 -3.72695 | gap 1, opp_overlap 452627, overlap 452587 AGCGCCGCCAGGAAA CGGC-GGCTGACCG GCA CGGTCTGCCCGGCG ATCGTCACGATCTCG TERM 510 452627 - 452664 + g 86 -17.1 -3.28712 | gap 1, opp_overlap 452611 GGCGGCTGACCGGCA CGGTCTGCCCGGCGATCG TCA CGATC-TCGGCCAGACCG TTGTCGGCGAAGGCG Rru_A0377 455014 - 453284 - | Signal transduction histidine kinase (STHK), LytS TERM 511 454752 - 454713 - G 83 -15 -3.67597 | gap 1, overlap 454714 CCGCCCATCGAATAA CGGTGCAGGCCGCCGGTCA GCC CGACCGCCAGCCCG-ACCG AGGGCCCGCCCAGCA TERM 512 454763 - 454714 - G 72 -14.9 -2.80344 | gap 1, overlap 454713 CGCCCATCGAATAAC GGTGCAGGCCGCCGGTCAGCCCGA CCG CCAGCCCGACCGAGGGCCCGC-CC AGCATTCCGCCGAGC Rru_A0378 457768 - 455135 - | hypothetical protein TERM 513 456991 - 457017 + g 72 -5 -4.56597 | opp_overlap 456983 CGGCAAAGCGATCGC CAGGGGCCGC CGTCCGC GCCGCCACTG TTTTTCGCCGCCCGA TERM 514 457785 - 457829 + H 86 -15 -3.35679 | gap 2, overlap 457786 CTCGCTACCGTGATT TTCCGCGACGCCCGGGTGGACC GCT GGTCCGGCCGGG-G-CGCGGAC TTATCAATGGGAGAG TERM 515 457786 - 457828 + H 85 -18.5 -2.61264 | gap 2, overlap 457785 TCGCTACCGTGATTT TCCGCGACGCCCGGGTGGACC GCT GGTCCGGCCGGG-G-CGCGGA CTTATCAATGGGAGA Rru_A0379 457849 - 458331 + | flavodoxin FldA TERM 516 458331 - 458379 + F 76 -12.3 -3.28712 | gap 1, opp_overlap 458332, overlap 458332 GGACCACCTGAAATA ACGCCGGCGCCCGAGGGAGGGA CCTTGA TCCGTCCCCCGGGCG-CGCCGA TTCTCGACCAGGCAA TERM 517 458332 - 458378 + F 78 -15.8 -2.57132 | gap 1, opp_overlap 458332, overlap 458331 GACCACCTGAAATAA CGCCGGCGCCCGAGGGAGGGA CCTTGA TCCGTCCCCCGGGCG-CGCCG ATTCTCGACCAGGCA TERM 518 458378 - 458332 - f 100 -18.7 -3.94634 | gap 1, opp_overlap 458332 458331 GACCACCTGAAATAA CGCCGGCGCCCGAGGGAGGGAC CTTG ATCCGTCCCCCGGGCG-CGCCG ATTCTCGACCAGGCA Rru_A0380 458408 - 458764 + | glyoxalase/bleomycin resistance protein/dioxygenase Rru_A0381 460051 - 458807 - | major facilitator transporter TERM 519 459113 - 459100 - G 70 -3.7 -4.56597 | TCGCGGCCTGAAAAA GCTGG TAGC CCGGC GTCAGGACGAGGATC TERM 520 459214 - 459182 - G 72 -8.4 -4.03888 | gap 2 GACCGACAACAAGAA GGC-CCCGGC-GGCCA GCA TGGCCAGCCCGATGCC GACAACCCGCCGCGC TERM 521 459565 - 459541 - G 79 -4.1 -4.91511 | overlap 459542 459543 ATTGGACCAGAAAAA TCCCCCGCCAG CCG CTGGCCGAGAG CAGCGCCCCGCCGAG TERM 522 460322 - 460290 - g 72 -4.7 -4.56597 | opp_overlap 460291 460299, overlap 460291 TCGCGCTGGGAAAAA CCGCCGGATTCTCGC TCG ACGAGATTTCCGCGA TGTTTGGCAAAACCG Rru_A0382 460121 - 460585 + | MerR family transcriptional regulator Rru_A0383 460721 - 461086 + | SH3 domain-containing protein TERM 523 461121 - 461092 - f 75 -8 -4.25104 | opp_overlap 461092 461090 461088 461102, overlap 461101 CGGCGCTTAGCAAAA TAGTAAAAAGGG GTCAGA CCCTATTTACTA TCTGTTTCCTCTCTT TERM 524 461113 - 461101 - f 77 -3.3 -4.98616 | opp_overlap 461092 461090 461088 461102, overlap 461092 GCAAAATAGTAAAAA GGGGT CAG ACCCT ATTTACTATCTGTTT TERM 525 461391 - 461427 + G 72 -7.1 -4.18018 | overlap 461394 GGGTACCGGGCGTTG CCCGCGGAGTGGCGG CCCGATC CCGCCTTTCCGCTGA TTTTGGGTACGGACG Rru_A0384 461217 - 462236 + | NADPH-quinone reductase TERM 526 462368 - 462341 - f 83 -2 -5.18355 | gap 1, opp_overlap 462347 462348, overlap 462348 CTTAAAAAGTAAAAA GTGAAAA-GGGGT CAG ACCCCGTTTTGTC GGCGCGCTTTACGGC TERM 527 462347 - 462361 + F 71 -5.6 -4.37092 | opp_overlap 462341 462348, overlap 462348 AAGTAAAAAGTGAAA AGGGGT CAG ACCCCG TTTTGTCGGCGCGCT TERM 528 462360 - 462348 - f 84 -9.1 -4.49644 | opp_overlap 462347 462348, overlap 462341 AGTAAAAAGTGAAAA GGGGT CAG ACCCC GTTTTGTCGGCGCGC TERM 529 463303 - 463278 - g 79 -2.4 -5.00616 | gap 1, opp_overlap 463278 463279, overlap 463279 463280 CGGTCGCCGAAAAAA TCTCGGCCGCC GTACA GGCGGCGG-GT GGGCTTATCACCCCC Rru_A0385 462542 - 464272 + | gamma-glutamyltransferase 1 TERM 530 464283 - 464317 + T 100 -15.7 -4.08216 | gap 1, overlap 464283 ATTGAGCGTTCGATC G-GCCCCCCGGCCCTT TGAG AGGGGCCGGCGGGCGC TTTTCCGCGAAGTCA TERM 531 464283 - 464316 + T 83 -15.9 -3.04715 | overlap 464283 ATTGAGCGTTCGATC GGCCCCCCGGCCCTT TGAG AGGGGCCGGCGGGCG CTTTTCCGCGAAGTC Rru_A0386 465022 - 464330 - | ArsR family transcriptional regulator TERM 532 465068 - 465095 + H 71 -7 -4.26076 | ATCAATGGCTTACGA CAGGGGCTTC AAGAAAAG GAGGTCCCTG TTTTGATCGCGGTCA TERM 533 465355 - 465374 + G 75 -11.4 -3.66028 | gap 1 TCTTTTCGCCGATTA CCGCCTGCG GGT CGC-GGCGG TTCTTCGCGATTATG Rru_A0387 465098 - 465487 + | antibiotic biosynthesis monooxygenase TERM 534 465851 - 465886 + GT 79 -8.8 -4.20696 | opp_overlap 465845 465843 465842 AACAAACGACCGACG CCGGATTGGCGGCGAT CCTG AACGCCACCACCCCGG TTTTCGCCTTCCTGA Rru_A0389 466756 - 466466 - | antibiotic biosynthesis monooxygenase Rru_A0388 465562 - 466524 + | hypothetical protein TERM 535 466890 - 466870 - fH 70 -3.2 -4.65895 | gap 1 GCCGCTATCTAAAAA GCCGCTGGC GATC GACA-CGGC GCCCGGCCGGAGCCG TERM 536 467363 - 467383 + G 72 -8.2 -4.07568 | opp_overlap 467374, overlap 467358 GCTCCCGGGTGGCGA CGGCTAGG CAAGC CCTTGCCG TTTTGACCACGGCCG Rru_A0390 466945 - 467925 + | hypothetical protein Rru_A0391 468458 - 468210 - | hypothetical protein Rru_A0392 469253 - 468486 - | molybdopterin binding domain-containing protein Rru_A0393 469723 - 469268 - | NUDIX hydrolase TERM 537 469607 - 469565 - G 77 -13.3 -3.53012 | gap 1 TTTGCCGCCGGGAAA CTCCCACAGCCCGGCCAGGG ATTT CCCCGGC-GGGCGTTGGGCG AGCAGCACCCGGCCG Rru_A0394 470972 - 469734 - | N-acetylglutamate synthase / glutamate N-acetyltransferase TERM 538 471167 - 471140 - R 100 -16.2 -4.64861 | overlap 471141 GCGGGGGAAAACAAA GCGGGGGGCGCC TTGC GGCACCCCCCGG GATGTCAGGCGGGCG TERM 539 471166 - 471141 - R 95 -19.7 -3.38435 | overlap 471140 CGGGGGAAAACAAAG CGGGGGGCGCC TTGC GGCACCCCCCG GGATGTCAGGCGGGC TERM 540 471236 - 471195 - R 100 -17.9 -3.60792 | gap 1, opp_overlap 471195 471197 471226 471230, overlap 471196 GCGGGAAGCGCCAAA GGCGCCCCCGGCGGCCGATC AGG GCTTGGCCGCCGGG-GCGGC GTCCTTGGCTCCGGC TERM 541 471195 - 471240 + r 83 -16.2 -3.06312 | gap 3, opp_overlap 471195 471196, overlap 471197 471226 471230 GCGGGAAGCGCCAAA GG-CGCC-C-CCGGCGGCCGATC AGG GCTTGGCCGCCGGGGCGGCGTCC TTGGCTCCGGCCTTT TERM 542 471236 - 471196 - R 86 -18.1 -2.76261 | opp_overlap 471195 471197 471226 471230, overlap 471195 CGGGAAGCGCCAAAG GCGCCCCCGGCGGCCGATC AGG GCTTGGCCGCCGGGGCGGC GTCCTTGGCTCCGGC TERM 543 471197 - 471237 + r 84 -17.6 -2.75064 | gap 2, opp_overlap 471195 471196, overlap 471195 471226 471230 GGGAAGCGCCAAAGG CGCC-C-CCGGCGGCCGATC AGG GCTTGGCCGCCGGGGCGGCG TCCTTGGCTCCGGCC TERM 544 471230 - 471252 + r 74 -6.8 -4.4261 | opp_overlap 471195 471196, overlap 471197 471195 471226 AGGGCTTGGCCGCCG GGGCGGCGTC CTT GGCTCCGGCC TTTTCCTGTTCGGCG Rru_A0395 472139 - 471213 - | PpiC-type peptidyl-prolyl cis-trans isomerase Rru_A0396 473587 - 472310 - | diaminopimelate decarboxylase TERM 545 474021 - 473975 - RH 90 -15.1 -3.44051 | gap 1, opp_overlap 474012 CCGCCAGCAGCACAA CGCCGACGGCGATCACCAGCAG GGCG CGGCCGGTCATCGCGG-CGGCG CCTTGGCGGCGTAGC Rru_A0397 475444 - 474008 - | argininosuccinate lyase TERM 546 474196 - 474206 + gH 74 -2.4 -4.83615 | overlap 474181 GGCTGAGGTCTTCCA GGCC CAC GCCC TTTTTCTCGGCCATC TERM 547 474815 - 474825 + gH 70 -8.2 -3.90112 | opp_overlap 474794 GGCCAGGGCGGCCGA GCCC AGC GGGC TTTCGTTGAGGCGGA Rru_A0398 475443 - 476114 + | Thiol-disulfide isomerase and thioredoxins-like Rru_A0399 476846 - 476109 - | phosphoesterase, PA-phosphatase related TERM 548 476765 - 476742 - G 77 -13.8 -3.40082 | GCAAAGATAGAGGAA CGGCGCCAGC AGCG GCCGACGCCG ACACCACGCGATATG Rru_A0400 476995 - 478437 + | hypothetical protein Rru_A0401 478564 - 479253 + | hypothetical protein Rru_A0402 479258 - 479857 + | hypothetical protein Rru_A0403 480604 - 479891 - | Short-chain dehydrogenase/reductase SDR Rru_A0404 482225 - 480759 - | amidophosphoribosyltransferase Rru_A0405 482981 - 482271 - | colicin V production protein Rru_A0406 484390 - 482981 - | DNA repair protein RadA Rru_A0407 485213 - 484440 - | ABC transporter component TERM 549 485162 - 485172 + g 81 -8.2 -4.56597 | opp_overlap 485150 485169 CAAGCACGACTTTCG GGCC AAA GGCC TTTTTCAGGCCGCGC Rru_A0408 485983 - 485210 - | hypothetical protein TERM 550 485975 - 485956 - G 89 -5.6 -5.17507 | overlap 485969 AAAAGGTAAGAAAAA CCCGTCCA ATAA TGGCCAGG AAATTCATTGGCCGC Rru_A0409 487104 - 485980 - | alanine racemase TERM 551 487144 - 487166 + r 86 -12.7 -3.85698 | opp_overlap 487137 487143 487142 GCGGCAAAGGAAAGG GCTCCGGCG CGAGT CGTCGGAGC TTTATAGGCCCGGCG Rru_A0410 488720 - 487197 - | DnaB helicase TERM 552 488032 - 488082 + g 77 -3.9 -4.84359 | gap 2, overlap 488034 488034 GCCGTTTTGCCCATC GACGGGCGGCCGGCCAGGATCAG AAGATCG CTG-TCGT-GCAGGCCGCCCAGC TTTTTGTCGAGATCG TERM 553 488861 - 488803 - R 84 -9.6 -4.56597 | gap 3, overlap 488804 488805 488851 GCGGGCCGGGAAAAA GCGGACGTCCCCACCCCCGTACCACCGGC ACAA GGCGGCGGCA-AGGGATGGGGACGG-C-C CCTGTCAGCGAACGG TERM 554 488862 - 488804 - R 95 -18.1 -3.33744 | gap 1, overlap 488803 488805 488851 CGGGCCGGGAAAAAG CGGACGTCCCCACCCCCGTACCACCGGC ACAA GGCGGCGGCA-AGGGATGGGGACGGCCC CTGTCAGCGAACGGT TERM 555 488861 - 488805 - R 100 -21.6 -2.60032 | gap 1, overlap 488803 488804 488851 GGGCCGGGAAAAAGC GGACGTCCCCACCCCCGTACCACCGGC ACAA GGCGGCGGCA-AGGGATGGGGACGGCC CCTGTCAGCGAACGG rplI 489480 - 488893 - | 50S ribosomal protein L9 Rru_A0412 490446 - 489520 - | hypothetical protein TERM 556 490474 - 490520 + r 95 -18.7 -3.34013 | gap 2, opp_overlap 490499, overlap 490474 TGGACGCGGGCCCAA GG-GGCGC-GGCCGGAGGCGGGG AAA CCCCGCTTCCGGCCAGGGACGCC TTACTTCAGCACGTA TERM 557 490474 - 490519 + r 88 -18.9 -2.60194 | gap 1, opp_overlap 490499, overlap 490474 TGGACGCGGGCCCAA GGGGCGC-GGCCGGAGGCGGGG AAA CCCCGCTTCCGGCCAGGGACGC CTTACTTCAGCACGT rpsR 490757 - 490521 - | 30S ribosomal protein S18 Rru_A0414 491236 - 490754 - | SSU ribosomal protein S6P Rru_A0415 491531 - 492469 + | [Acyl-carrier-protein] S-malonyltransferase TERM 558 492568 - 492530 - f 75 -8.3 -4.23732 | gap 2, opp_overlap 492540, overlap 492533 TAAAGATAAAGCAAA TCATGA-GAAAGGA-CGGC TGG GCCGATCCTTCCATCAGGA GATCACCGATGTTCG TERM 559 492617 - 492601 - g 80 -9.3 -4.16842 | opp_overlap 492600 CTGACCGGCAAGAAA GCCCTGG TGA CCGGGGC GTCTGGTGGGCTGGG TERM 560 493186 - 493171 - g 83 -3.9 -5.13016 | overlap 493164 AACGAAAAGCAAAAA GAGGC CATCTT GCCCC ATATCCCCGCCGGAC Rru_A0416 492577 - 493314 + | 3-oxoacyl-[acyl-carrier-protein] reductase Rru_A0417 493509 - 493742 + | Acyl carrier protein (ACP) TERM 561 494481 - 494523 + G 72 -11.8 -3.53012 | CCGATGTGATGGTGG CCGGTGGCGCCGAATCCGCG GTC TGCCGGATCGGCATCGCCGG TTTCGCCGCCGCCCG Rru_A0418 493901 - 495163 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 562 495152 - 495174 + F 89 -12 -4.19746 | TCGCTGATCTTCGGG GGAGCCCC CTAACCA GGGGCTCC TTCTTTTCAGGTAAG TERM 563 495814 - 495800 - g 82 -12.8 -3.9941 | overlap 495796 TCGTCGAGAAGGAAA CCGCCG TTC CGGCGG AGCGGGCGCGGGTGG Rru_A0419 495193 - 496179 + | aminodeoxychorismate lyase Rru_A0420 496593 - 496198 - | hypothetical protein TERM 564 496726 - 496701 - R 100 -20.5 -3.5936 | CGCAAACGCGCCAAA GGCCCCGCATG ATGC CATGCGGGGCC CAAGAAAGGCGATAG Rru_A0421 497075 - 496749 - | hypothetical protein TERM 565 497118 - 497147 + r 71 -7.7 -4.07568 | gap 1, overlap 497118 TGGCGCGTTAGGGGC GGGGG-GATGGCCC TGT GAGCCGCCGCCCCC TTTTGCAGGGGCCGG Rru_A0422 497557 - 497171 - | hypothetical protein TERM 566 497693 - 497679 - R 100 -8.5 -5.73339 | ATAAGCATAAAAAAA CCCCC GTAGA GGGGG GGACCGGGGCGGGCG Rru_A0423 498124 - 497720 - | hypothetical protein TERM 567 497804 - 497748 - G 82 -15.7 -3.37487 | gap 1, overlap 497746 GGATAGGTGTAAAGA CGCTGACGCGCCGCCGAGCCGCCGTC GGAGGG GACGACGGCCCGCAGGCGCGGC-GTG GTGGCCGGGCCCAGT TERM 568 498019 - 498006 - G 78 -5.9 -4.58242 | AAAAAAGTCAGAAAA GCCCC GAGC AGGGC GGCCACGACAATCGC Rru_A0424 498377 - 498153 - | hypothetical protein TERM 569 498435 - 498394 - R 76 -9.9 -3.72757 | gap 1, overlap 498389 498395 GATAAGTTAAGAGAA GGGGGCCCTCCCGGGACCCG TGT CGGGGCGGGAG-GGGCGCCC CGTGGCGGACGCCCC Rru_A0425 498828 - 498478 - | hypothetical protein TERM 570 498739 - 498711 - G 74 -7.4 -4.18018 | gap 2, overlap 498712 CGTGGCTATCGAAAA CCGGCGCGGACTGC CAG GC-GTCGGCGC-GG TCGGACGGACCATCG Rru_A0426 499318 - 498977 - | hypothetical protein TERM 571 499356 - 499345 - R 76 -7.2 -4.4767 | CGATCGAGGATAAAA GGCG ACGG CGCC CGAAAAAAACAGCGT TERM 572 499378 - 499366 - R 95 -6.9 -5.40072 | GGCGCCCGAAAAAAA CAGCG TGT CGCCG AAAGCGATAGGGCTG Rru_A0427 500362 - 499592 - | Short-chain dehydrogenase/reductase SDR Rru_A0428 500608 - 501495 + | hypothetical protein gmk 501508 - 502164 + | guanylate kinase TERM 573 502288 - 502325 + G 70 -6.4 -4.23892 | gap 1 AACTATTGAAGGGGG CGG-TGATCGGCC CGGCGCAACTGAT GGCCGATCAGCCG TTTTCGGTGATTCGC TERM 574 502385 - 502397 + G 95 -6.9 -5.48825 | overlap 502383 TGTTGGGGTGCTGGC CGCCG GGG TGGCG TTTTTTTCGCTGCTG Rru_A0430 502245 - 503186 + | ribonuclease BN TERM 575 503218 - 503188 - T 74 -11.1 -3.53012 | gap 1 TCGCCCGGGCTTAAA CCGACCCGG-CGGC ATCG ACCGCCCGGGCCAG GGCGGCGAAGCCCTC ksgA 504049 - 503183 - | dimethyladenosine transferase TERM 576 503540 - 503569 + g 71 -9.1 -3.86897 | GTAATCCTTGGTGCC GGGGCGGGCGGCC AGAC GGTCGACCACCTC TTTCTGGAACATCAG Rru_A0432 505080 - 504046 - | 4-hydroxythreonine-4-phosphate dehydrogenase Rru_A0433 506411 - 505077 - | PpiC-type peptidyl-prolyl cis-trans isomerase Rru_A0434 509112 - 506452 - | organic solvent tolerance protein OstA-like TERM 577 506938 - 506960 + g 72 -12 -3.55622 | TTTGGGGAACAGGTC GTTGTCGCGC TGG GCGCGATAGC TTTGGCCGACTTCGA TERM 578 508006 - 507976 - G 76 -8.9 -4.1673 | gap 1, opp_overlap 507972 CAAGGGGGGAAGAAA GCCCGAGCGC-CGG TAAA CCGTGGGGTCGGGC TGGCTGATATAGGGC TERM 579 509134 - 509093 - G 72 -13.8 -2.96452 | gap 2, overlap 509073 509088 ACCGGCATAAGCAGA GCCGTT-CCGGAAG-CGCCC ATGG GGGCGACTCCCGGGAACGGT GATCCAGGGGAGGTC Rru_A0435 511082 - 509313 - | Acyl-CoA dehydrogenase TERM 580 509772 - 509810 + g 90 -18.8 -3.12668 | CTCGTAGATCGAGGC GATGCGGGCGTCGCGCAG GAA CTGGGCGGCGCCGGCGTC TTCGATATAGCCCTG Rru_A0436 511373 - 511891 + | hypothetical protein TERM 581 511882 - 511898 + T 88 -6.5 -5.0133 | opp_overlap 511885 CACCCGCACGGCGCA GAAGCAG TAA CCGCTTC TTTTTTCGCGCGGTA TERM 582 511905 - 511963 + T 100 -22.5 -3.02144 | opp_overlap 511920, overlap 511904 511920 AACCGCTTCTTTTTT CGCGCGGTAAAAAAACCGCCCGCTTCC TTGAT GGAGGCGGGCGGTTTTTTATGCGCTCG TCTTAGGGCCAATCC TERM 583 511948 - 511920 - T 100 -17.4 -5.40072 | opp_overlap 511904 511905 511920 CGCGCGGTAAAAAAA CCGCCCGCTTCC TTGAT GGAGGCGGGCGG TTTTTTATGCGCTCG TERM 584 511920 - 511948 + T 100 -19.6 -5.26316 | opp_overlap 511920, overlap 511904 511905 CGCGCGGTAAAAAAA CCGCCCGCTTCC TTGAT GGAGGCGGGCGG TTTTTTATGCGCTCG TERM 585 512077 - 512049 - T 100 -18.2 -4.58395 | overlap 512053 GTGATGGCCCAAAAA GAAACCGGCGCC ATAAA GGCGCCGGTTCC AAATCCGAGAGGTGT TERM 586 512073 - 512053 - T 100 -15.4 -4.85782 | overlap 512049 TGGCCCAAAAAGAAA CCGGCGCC ATAAA GGCGCCGG TTCCAAATCCGAGAG Rru_A0437 513129 - 512107 - | OmpA family protein TERM 587 513375 - 513356 - R 91 -13.6 -3.84246 | opp_overlap 513352 TCCGCAACGAGCAAA CGCGCCAA TCCC TTGGCGCG AAAGTTTGCCGTCCT Rru_A0438 516138 - 513394 - | multi-sensor Signal transduction histidine kinase TERM 588 516876 - 516922 + G 84 -9.1 -4.45771 | opp_overlap 516874 516875, overlap 516839 516877 CTCTGCGTCCAAAGC GCGGCGACGGCGGCCCGGGTG CTTCC CGCCCGCATGGCCGCCGCCGG TTTGTCTTTTACCAT TERM 589 516877 - 516921 + G 71 -12.6 -3.26378 | opp_overlap 516874 516875, overlap 516839 516876 TCTGCGTCCAAAGCG CGGCGACGGCGGCCCGGGTG CTTCC CGCCCGCATGGCCGCCGCCG GTTTGTCTTTTACCA TERM 590 517412 - 517436 + G 100 -13.5 -5.04325 | overlap 517400 TGCCCTGCGGCGCGA CGGCGGGTTGA TGG TCGCCCCGCCG TTTTTCTAATTTCCC Rru_A0439 516351 - 517445 + | extracellular solute-binding protein Rru_A0440 518433 - 517462 - | xylose isomerase-like TIM barrel TERM 591 518511 - 518531 + H 95 -2.6 -5.60993 | gap 1, opp_overlap 518513 GAACGACCCCGAAGA GACCTCTTT GTTA GAAG-GGTC TTTTTTTATGCAACC Rru_A0441 518604 - 520565 + | chemotaxis sensory transducer Rru_A0442 522024 - 520588 - | FAD linked oxidase-like Rru_A0443 522768 - 522118 - | hypothetical protein TERM 592 522208 - 522228 + g 73 -4 -4.61868 | TTTTGGGGGGAAGGC GGCGTGAA TAACC TTTATGCC TTTTGTGTGTAAATA TERM 593 522829 - 522803 - R 73 -9.3 -3.9392 | overlap 522805 CGGTACCGGAAACAA TACAGGGGCGC ACAAG GCGCCCCTGGG GTCTCAATGCTCGCT TERM 594 522827 - 522805 - R 93 -16.3 -3.55946 | overlap 522803 GTACCGGAAACAATA CAGGGGCGC ACAAG GCGCCCCTG GGGTCTCAATGCTCG TERM 595 522992 - 522936 - R 74 -11.3 -3.53012 | opp_overlap 522975 522978, overlap 522971 TTTGGCTCTGCGAAA CACCGGGCCGCAGGGTTGGCGAACTCC AAA GGATACCTTCAACCGCGCGGCGCGGCG GCGCGGCGCAGGCGG Rru_A0444 523942 - 522974 - | translation factor SUA5 Rru_A0445 524721 - 523939 - | 3(2),5 -bisphosphate nucleotidase TERM 596 524065 - 524028 - G 70 -13.3 -3.04144 | gap 1, opp_overlap 524039, overlap 524007 CGTCCAGGGTGAAGA CGCCACCGCCGGCGGCGC GCA GCACCGCATG-GGCGGCG CAGGTGTCCCATTCA TERM 597 524809 - 524789 - R 75 -8.1 -4.25104 | CCCGGGTGACGAAAA CCGGGGACG GGC CGACGCCGG CCAAAGGTCGAACCC TERM 598 524869 - 524888 + r 84 -9.2 -4.54727 | overlap 524870 524871 GGCAAATGTCTTTTT CGCCGAGC GGTC GCTCGGCC TTTTGGTTTGCGGCG TERM 599 524870 - 524887 + r 76 -12.7 -3.32354 | overlap 524869 524871 GCAAATGTCTTTTTC GCCGAGC GGTC GCTCGGC CTTTTGGTTTGCGGC Rru_A0446 525354 - 524908 - | hypothetical protein Rru_A0447 526132 - 525368 - | AMMECR1 TERM 600 525712 - 525702 - G 83 -8.2 -4.58395 | overlap 525703 525704 GTGATCCGGGAAAAA CGCG GAT CGCG GGTCGCCGCCGCCCA TERM 601 525947 - 525976 + g 71 -12.1 -3.28924 | GGCGCCATGGTCGCG GGTGGCGCGGATC GCCA GATCCTCCCCACC TTCTGCCCCACCGTC TERM 602 525980 - 526034 + g 86 -9.7 -4.57569 | gap 1, overlap 525981 ATCCTCCCCACCTTC TGCC-CCACCGTCGGCCCCGTCGTCG GTTT CGCCGCCGGGGTCGGCCGGGATGGCG TTTTTCGCCGCGTCG Rru_A0448 526990 - 526142 - | hypothetical protein TERM 603 526946 - 526920 - G 75 -9.4 -4.03234 | overlap 526923 TCGCCGGGATAGAAA CGACCGGCCA CCGCCAT CGGCCGATCG GCCAGAAGCGGGCCG Rru_A0449 527207 - 528319 + | radical SAM family protein TERM 604 528393 - 528354 - f 100 -17.8 -4.07568 | overlap 528358 CGCCGGGGGCGAAAA CGCACTCAGGGGACCCGA TGCC TCGGGCCCCCTGGGCGAG AAAGAGCGTAATCGC TERM 605 528389 - 528358 - f 86 -18 -2.74605 | overlap 528354 GGGGGCGAAAACGCA CTCAGGGGACCCGA TGCC TCGGGCCCCCTGGG CGAGAAAGAGCGTAA TERM 606 528668 - 528712 + G 78 -10.5 -4.07568 | overlap 528669 528692 AGATTGATCTGCTGA TCGCCCAGGTCCCGGCGGTGA CCC TCACCGGCGATGCCTTGGCGC TTTTGGGGCGGGAAG TERM 607 528669 - 528711 + G 72 -14 -3.04398 | overlap 528668 528692 GATTGATCTGCTGAT CGCCCAGGTCCCGGCGGTGA CCC TCACCGGCGATGCCTTGGCG CTTTTGGGGCGGGAA TERM 608 528837 - 528858 + G 73 -12.9 -3.28924 | GGGCCAAGCGGCGAT GACGCCGCG CCGT CGCGGCGCC TTGTGGCGGCAAATC TERM 609 529020 - 529076 + G 75 -11.9 -3.67775 | gap 4, opp_overlap 529041, overlap 529041 CTATTGGCCGGTTCT GCTAGAGCGGCGA--GCG-GA-AAAGTGG GTA CCGCTTTTTCGCGCCATCGCCGCTCTAAC TTATTGAATCGAGAT TERM 610 529041 - 529051 + G 75 -4.6 -4.57569 | opp_overlap 529041, overlap 529020 GCGGCGAGCGGAAAA GTGG GTA CCGC TTTTTCGCGCCATCG Rru_A0450 528562 - 529083 + | hypothetical protein TERM 611 529100 - 529128 + F 100 -19.1 -3.83026 | opp_overlap 529097 529096 TCGAGATCAAAGTTT CTGCGTTAAATGG ATC CCATTTAACGCAG TTTGATCTAGGCGCG Rru_A0451 529180 - 529524 + | hypothetical protein TERM 612 529508 - 529564 + F 83 -16.3 -3.02144 | gap 3, opp_overlap 529516 529518, overlap 529513 529518 TCGAAGGCGGGCCGG CCA-G--ATTAGAGGGGTGAGCGTGAAC CATG GTTCACGCTCACCCCTCTAATATCCTGA TATTGAAGCAAATCG TERM 613 529513 - 529556 + F 100 -31.4 -2.86432 | opp_overlap 529516 529518, overlap 529508 529518 GGCGGGCCGGCCAGA TTAGAGGGGTGAGCGTGAAC CATG GTTCACGCTCACCCCTCTAA TATCCTGATATTGAA TERM 614 529553 - 529516 - f 100 -28.7 -2.62184 | opp_overlap 529513 529508 529518, overlap 529518 GGGCCGGCCAGATTA GAGGGGTGAGCGTGAAC CATG GTTCACGCTCACCCCTC TAATATCCTGATATT TERM 615 529518 - 529551 + F 100 -25.5 -2.87944 | opp_overlap 529516 529518, overlap 529513 529508 GCCGGCCAGATTAGA GGGGTGAGCGTGAAC CATG GTTCACGCTCACCCC TCTAATATCCTGATA TERM 616 529551 - 529518 - f 100 -25.5 -2.85351 | opp_overlap 529518 529513 529508, overlap 529516 GCCGGCCAGATTAGA GGGGTGAGCGTGAAC CATG GTTCACGCTCACCCC TCTAATATCCTGATA TERM 617 529572 - 529614 + F 80 -11.5 -3.70902 | gap 2, opp_overlap 529572 529577, overlap 529577 TATCCTGATATTGAA GCAAATCGTCGTCGCGATCTG CTT CAGATCGCT-CGG-GATTTGC TTTGGCTCTGCCCGA Rru_A0452 529650 - 529988 + | CRISPR-associated Cas2 family protein TERM 618 530050 - 530014 - T 100 -17.3 -5.14563 | CCCTGCACGAAAAAA CGCCCGAATCCTCAAGA AAA TCAAGAGGATCCGGGCG GTACAACTCTACCAT Rru_A0453 534255 - 530734 - | CRISPR-associated endonuclease Csn1 family protein TERM 619 531101 - 531084 - G 73 -12.7 -3.3785 | CGAAGCGAGTCAGAA CCCGGTG GGTC CACCGGG GCCGGCCCTTCACCT TERM 620 532524 - 532537 + g 70 -5.9 -4.19238 | TTTTGCGCAGTTCCA CGTCG ATCT CGGCG TTTTCGCGTTCGCGC TERM 621 533453 - 533405 - G 74 -10.2 -3.78775 | gap 2, opp_overlap 533423 TGGCGGATGATGAAA TCCTGCACCGTCGGCAGGGCGCGC AAG GCGCGGTCTTC-GCCGG-GCAGGA AGGCGCAAGGGCCCG TERM 622 533600 - 533621 + g 81 -11.5 -3.9941 | AGGGCGCGGGTGGGG GCGACCACG CCGT CGCGGTCGC TTTGGTTATAGCGCA Rru_A0454 534503 - 536005 + | leucyl aminopeptidase Rru_A0455 536043 - 536558 + | NUDIX hydrolase Rru_A0456 536856 - 536569 - | transcriptional regulator Rru_A0457 537154 - 536858 - | hypothetical protein TERM 623 537252 - 537264 + H 83 -4.7 -5.06414 | GATTGTCCGCTGCTA CCCGG GCA CAGGG TTTTTCTTGCCGGCG Rru_A0458 537511 - 538188 + | hypothetical protein TERM 624 538215 - 538246 + F 100 -25.2 -3.17194 | CATCCGTTTTCGTGT CCGGGGCGCGGAGG ATCT CTTCCGCGCCCCGG TTGCATTCCGGCCCT Rru_A0459 538980 - 539894 + | hypothetical protein Rru_A0460 540642 - 540016 - | NADP oxidoreductase, coenzyme F420-dependent Rru_A0461 540748 - 541641 + | LysR family transcriptional regulator TERM 625 542219 - 542237 + G 70 -10.2 -3.66178 | opp_overlap 542219 542218 542221 GGCGGTGATCGAAAG CAGCCCGC TCG GCGTGCTG TTTGGCGTTCAGCCG TERM 626 542862 - 542879 + G 74 -2.5 -4.72272 | overlap 542834 542833 GTGATGGGCGGCAAG CGCCTGG ATCG CCCGGGG TTTTTCATGGAGCCG Rru_A0462 541668 - 543248 + | aldehyde dehydrogenase TERM 627 543247 - 543297 + F 95 -19.1 -3.28712 | TCGACGCCGCCGCCT GACCGATCAGGCGCCGC-GCTAGCC AAG GGTT-GCGGCGCCGCCTGATCGGAC TTATCACGGCAAGAC TERM 628 543364 - 543376 + F 80 -10.5 -4.13995 | GCCTTGGCCCGTGTC CGCCC CCC GGGCG TTTCCTTTCTGACAG Rru_A0463 543399 - 544469 + | alanine racemase-like TERM 629 544674 - 544714 + G 77 -13.2 -3.53012 | gap 1, overlap 544670 544675 AGCATCGGCGACGCC CCGGTCAGCGACGCGCCGC GTCT GCTGCGCGCCG-TGACCGA TTTCAGCCAGGGCGG TERM 630 544675 - 544713 + G 77 -16.7 -2.71712 | gap 1, overlap 544670 544674 GCATCGGCGACGCCC CGGTCAGCGACGCGCCGC GTCT GCTGCGCGCCG-TGACCG ATTTCAGCCAGGGCG Rru_A0464 544527 - 545348 + | hypothetical protein Rru_A0465 546290 - 545391 - | phosphoserine phosphatase TERM 631 545801 - 545842 + g 75 -15.7 -2.78384 | gap 1, opp_overlap 545765 CGGCCATGGTGCGCA CCAGGGT-GCGCCCGCCCGG GGT CAGGGCGGTCGCCGCCCAGG TCTCCTCCAGGGCGC TERM 632 547014 - 547051 + G 75 -9 -4.12188 | gap 1 GCTGGTGATCGATCC GCCGCGCGCCGCGCAGC GGGCG GCC-TGTGACGCGCGGC TTTTGGCGATGGTCG Rru_A0466 546394 - 547374 + | tRNA isopentenyltransferase TERM 633 547919 - 547903 - g 81 -7.9 -4.57569 | TTATCTGGTGAAAAA GGGCGAG GAT CTGGCCC GGGTGATCCACGAGG Rru_A0467 547496 - 549256 + | acetolactate synthase, large subunit TERM 634 549351 - 549318 - f 83 -16.6 -2.53876 | opp_overlap 549322 TGTTATCCCAAGGGA GCCCCCCGGCGCCG GTTGAT CGGCGGCGGGGCGC GGCCTCCCAGCCATC ilvH 549384 - 549911 + | acetolactate synthase 3 regulatory subunit TERM 635 550689 - 550664 - g 70 -10.5 -3.7282 | CGAGCTGATCAAGAA CGGCTTCGA GACCCTGG TCGAAGCCG GCTACGCCCCCGAGA Rru_A0469 550038 - 551057 + | ketol-acid reductoisomerase TERM 636 551154 - 551195 + F 100 -17.4 -4.07687 | gap 1, overlap 551158 GCCCCCAGGGGCGTG CGACCCACCCCTCCGGAAG TGACC CTTCCGGGGGGGT-GGTCA TTTTGGGCACAAAGT TERM 637 551158 - 551192 + F 100 -23.7 -3.08032 | overlap 551154 CCAGGGGCGTGCGAC CCACCCCTCCGGAAG TGACC CTTCCGGGGGGGTGG TCATTTTGGGCACAA TERM 638 551494 - 551514 + F 85 -12.5 -3.82083 | GGCGGATGGTAAGGT CGGGGCCGG TCC TCGGCCTCG TTTGCATTGTGGTGG TERM 639 552266 - 552247 - g 72 -13.6 -3.18264 | TTCCTGATCGAGGAA CCGATGGC CGCG GCCATCGG CGCCGGCTTGCCGGT Rru_A0470 551839 - 552867 + | rod shape-determining protein MreB Rru_A0471 553019 - 553876 + | rod shape-determining protein MreC TERM 640 554042 - 554000 - f 85 -17.6 -2.88999 | GCGCGACACATTACA GCGCGCCCCGGGCGCGATAC TCC ATAGCGCGCCCCAGGCGCGA CCAACACAGGGGGAA Rru_A0472 554069 - 554623 + | hypothetical protein Rru_A0473 554626 - 556671 + | peptidoglycan glycosyltransferase Rru_A0474 557734 - 556712 - | zinc-containing alcohol dehydrogenase superfamily protein Rru_A0475 558843 - 557746 - | NADH:flavin oxidoreductase/NADH oxidase TERM 641 558143 - 558171 + g 79 -11.5 -3.85698 | opp_overlap 558140 TCGTTGAAGGGATTG GCCGGCGACAGCC GCA GGCCGACGCGGGC TTTGTCCCAGACGCC Rru_A0476 559610 - 559038 - | OsmC-like protein TERM 642 559586 - 559562 - G 81 -8.6 -4.57341 | AATTTCCCTGAAAAA CGGCGATCTC GGGAA AAAATCGCCG GTGGATGAAAAAAAC TERM 643 559764 - 559822 + H 79 -16.2 -2.74322 | gap 1, opp_overlap 559775 559784, overlap 559765 559784 GTTCGAATCCTACTG CGCCCACCAAATTCAAAAAACCCAGCC TTAACC GGCTGGGTTTTTTGCGATTCG-GGGCG CTTTCGCCGATTAGA TERM 644 559765 - 559823 + H 90 -14.8 -3.57561 | gap 1, opp_overlap 559775 559784, overlap 559764 559784 TTCGAATCCTACTGC GCCCACCAAATT-CAAAAAACCCAGCC TTAACC GGCTGGGTTTTTTGCGATTCGGGGCGC TTTCGCCGATTAGAG TERM 645 559812 - 559775 - H 80 -11.4 -3.72695 | opp_overlap 559764 559765 559784, overlap 559784 ACTGCGCCCACCAAA TTCAAAAAACCCAGCC TTAACC GGCTGGGTTTTTTGCG ATTCGGGGCGCTTTC TERM 646 559803 - 559784 - H 100 -10.7 -5.22943 | opp_overlap 559784 559764 559765, overlap 559775 ACCAAATTCAAAAAA CCCAGCC TTAACC GGCTGGG TTTTTTGCGATTCGG TERM 647 559784 - 559803 + H 100 -10.7 -5.09426 | opp_overlap 559775 559784, overlap 559764 559765 ACCAAATTCAAAAAA CCCAGCC TTAACC GGCTGGG TTTTTTGCGATTCGG TERM 648 559841 - 559851 + H 71 -8.2 -4.13648 | overlap 559840 TCGCCGATTAGAGGG GGCG TGG CGCC TTTCTATCTGAGCTT Rru_A0477 559913 - 560608 + | hypothetical protein TERM 649 560734 - 560697 - T 74 -11.4 -3.48276 | opp_overlap 560691 560706, overlap 560706 TTTTCTGGCACAGAA TTCAAAAAACCCAGCC TTAACC GGCTGGGTTTTTTGCG ATTCGGCTGATTGCA TERM 650 560706 - 560725 + T 100 -10.7 -5.09426 | opp_overlap 560697 560706, overlap 560691 ACAGAATTCAAAAAA CCCAGCC TTAACC GGCTGGG TTTTTTGCGATTCGG TERM 651 560725 - 560706 - T 100 -10.7 -5.20154 | opp_overlap 560706 560691, overlap 560697 ACAGAATTCAAAAAA CCCAGCC TTAACC GGCTGGG TTTTTTGCGATTCGG Rru_A0478 562100 - 560754 - | radical SAM family protein Rru_A0479 563694 - 562192 - | radical SAM family protein TERM 652 563713 - 563748 + r 100 -20.5 -3.31322 | CACCCCCTGTTTTAG GACGATGCCGTCGCG AATATG CGCGACGGCATCGCC TTCTGAGAGATTACC Rru_A0480 563947 - 563759 - | hypothetical protein Rru_A0481 565939 - 564071 - | hypothetical protein TERM 653 564894 - 564924 + g 81 -8.4 -4.54727 | gap 2, opp_overlap 564915 CGCGCCCGGGGGGCG TCCGCCTGC--TCG ATCAG CGAACGCAGGCGGA TTTTGGTTTGGGCGA TERM 654 565057 - 565043 - G 73 -3.5 -4.57569 | gap 1, opp_overlap 565047 CCATTGGGCGAAAAA GGC-GC TGGA GCAGCC GGTGATATCGCACAG Rru_A0482 566864 - 566184 - | hypothetical protein TERM 655 567111 - 567148 + r 79 -12.1 -3.54935 | gap 1, opp_overlap 567111, overlap 567106 567146 TGGCTTTGAAGGAAA GTC-CCCGCGTTAAAGGG ATT TCCTTTAACGCGGTCGGC TTTCAGGGCCCTTTG TERM 656 567148 - 567111 - R 73 -9.2 -3.90112 | gap 1, opp_overlap 567106 567111 567146 TGGCTTTGAAGGAAA GTC-CCCGCGTTAAAGG GATTT CCTTTAACGCGGTCGGC TTTCAGGGCCCTTTG Rru_A0483 567480 - 567220 - | hypothetical protein Rru_A0484 568483 - 567488 - | hypothetical protein Rru_A0485 568903 - 570087 + | protoporphyrin IX magnesium-chelatase bchD 570084 - 571901 + | magnesium chelatase subunit D TERM 657 572088 - 572108 + G 79 -8.9 -4.3129 | opp_overlap 572090 572091, overlap 572091 CCGGCGGCAATGGGA AAGGCGGCG ACG CGCCGCTTC TTTTGCTGGTCCATG TERM 658 572091 - 572105 + G 91 -12.8 -4.27443 | opp_overlap 572091 572090, overlap 572088 GCGGCAATGGGAAAG GCGGCG ACG CGCCGC TTCTTTTGCTGGTCC Rru_A0487 571949 - 572881 + | Alpha/beta hydrolase fold TERM 659 573149 - 573162 + F 74 -3.7 -4.83615 | opp_overlap 573134, overlap 573133 573150 CCCTGTGCGCGGGGC GCGCC ATGG GGCGG TTTTTCTCCGCAATG Rru_A0488 573218 - 575266 + | TonB-dependent receptor TERM 660 575321 - 575341 + G 88 -16.1 -3.71848 | GGCGGCTTCTGGGGG GGGCGGCGG TGA TCGCCGCCC TTCTTGGTCCGCCGG Rru_A0489 575278 - 576222 + | periplasmic binding protein TERM 661 577138 - 577168 + G 79 -4.7 -4.81551 | overlap 577139 GCGCGATCTCAAGCT TGGCGTCGTC-ACCG CCC TGGTCGGCG-CGCCG TTTTTCCTGTGGCTG Rru_A0490 576212 - 577213 + | transport system permease protein TERM 662 577605 - 577648 + G 85 -16.6 -3.40403 | gap 1 TCTGACCGAGATGCG CAAGCGCCCGGTCGCCAGCCT GTC GGGC-GGCGAGCGGGCGCGGG TTCTGCTGGCCCGGG Rru_A0491 577210 - 578013 + | ABC transporter component Rru_A0492 578740 - 577988 - | hypothetical protein TERM 663 579741 - 579695 - g 86 -7.8 -4.87665 | gap 1, opp_overlap 579725, overlap 579696 CGCCACCTATAAAAA CCTGCTGCCCGCCGC-CCATC GCCGCT GGTGGAGCGACCGGCGGCTGG CGTGGTCGCGCTATT Rru_A0493 578808 - 580331 + | phytoene desaturase Rru_A0494 580336 - 581364 + | phytoene synthase Rru_A0495 581371 - 581706 + | hypothetical protein Rru_A0496 581834 - 582223 + | cyclic nucleotide-binding domain-containing protein Rru_A0497 583369 - 582269 - | ABC transporter component TERM 664 583430 - 583442 + r 77 -4.1 -5.00616 | AGGGCGGTCGGGGTT TTCAG GGG CTGGA TTTTTTCGCCCGCGG Rru_A0498 584213 - 583431 - | binding-protein dependent transport system inner membrane protein TERM 665 584148 - 584136 - G 74 -7.7 -4.18494 | CATGCGCAGCGAAAA CTCGA TGG TCGAG ACCAGCGGCAAGATG Rru_A0499 585082 - 584210 - | binding-protein dependent transport system inner membrane protein TERM 666 584299 - 584315 + g 71 -9.3 -3.84406 | opp_overlap 584290 584285 AGATCATGCCCAGGG CCAGGGC ATA GCCCAGG TTCTTGTCGTGCAGA Rru_A0500 586297 - 585194 - | extracellular solute-binding protein Rru_A0502 591317 - 587340 - | hypothetical protein TERM 667 588143 - 588127 - G 70 -2.1 -4.65895 | opp_overlap 588139, overlap 588128 GGCGCGATCGAAAAA GGGACGA TGC TCGGTCC GGTAGGAGCTTTCGT TERM 668 589674 - 589657 - G 74 -5.5 -4.52589 | opp_overlap 589656, overlap 589659 TTGTCGGACACAAAA GGCTGCA AACC TGCAGGC AATTGTCCGCGGAGT TERM 669 591788 - 591805 + H 70 -9.8 -3.54543 | TGCGAAATTCTGTGC CCCGGC CGGTGA GCCGGG TTTGGGCCCGTGCCT lysK 591916 - 593568 + | lysyl-tRNA synthetase TERM 670 593594 - 593632 + F 80 -10.5 -4.08394 | gap 1, opp_overlap 593602, overlap 593595 593602 CCTCCTAAGTATCAG TGC-AAAAAGGCCGGA CGCCGAAA TCCGGCCTTTTTCGCG TTTTCAGCCCGGTAT TERM 671 593623 - 593602 - f 85 -9.4 -4.63527 | opp_overlap 593595 593594 593602 GTATCAGTGCAAAAA GGCCGGAC GCCGAA ATCCGGCC TTTTTCGCGTTTTCA TERM 672 593602 - 593623 + F 100 -8.7 -4.7416 | opp_overlap 593602, overlap 593595 593594 GTATCAGTGCAAAAA GGCCGGA CGCCGAAA TCCGGCC TTTTTCGCGTTTTCA TERM 673 594810 - 594793 - g 70 -8.3 -3.92522 | CCGCAATTCCACAAA GGCGTCG ATTT CGGCGCC CCCACCGGCACGCCG Rru_A0504 593863 - 595122 + | peptidase M23B TERM 674 597369 - 597349 - g 77 -13.3 -3.53811 | TCGAGTCTGCCCAAA GCGGATGGC GGG ACCATCCGC GCCCTGCCCGGGCGC Rru_A0505 595288 - 597432 + | glycogen debranching protein GlgX TERM 675 597577 - 597609 + G 73 -9 -3.97368 | gap 1, overlap 597586 GCGAGGGCTGGTTTG GCGCCATGGTCGGCG GCAT CGGCG-CCGGGGCGC TTTATCGCTTCCGCA TERM 676 597986 - 598005 + G 90 -6.4 -5.16841 | gap 1, overlap 597989 GTTGATCGACGCCGC CCA-CGGCC TGG GGCTGATGG TTTTTCTTGATGTCG TERM 677 598255 - 598300 + G 71 -13.9 -2.82516 | gap 1 ATATCCTGGGCGAGA TCGCCGTGGCCGTCCGCGAGGC CTT GCCG-GCGGACCGCCACGTCCA TCTGGTGCTGGAAAA TERM 678 598547 - 598595 + G 83 -13 -3.85698 | gap 2, opp_overlap 598518, overlap 598552 598559 CCATCGCGGCGGCAT GGCGCGCGGCGAGCCGACGACGGC GCT GCCGCCGACGGC-CTTCGT-CGCC TTTCTGCAGAACCAC TERM 679 598552 - 598594 + G 71 -14.1 -2.91276 | gap 2, opp_overlap 598518, overlap 598547 598559 GCGGCGGCATGGCGC GCGGCGA--GCCGACGACGGC GCT GCCGCCGACGGCCTTCGTCGC CTTTCTGCAGAACCA TERM 680 598559 - 598585 + G 71 -15 -2.52234 | opp_overlap 598518, overlap 598552 598547 CATGGCGCGCGGCGA GCCGACGACGGC GCT GCCGCCGACGGC CTTCGTCGCCTTTCT Rru_A0506 597429 - 599249 + | glycoside hydrolase TERM 681 601268 - 601320 + G 70 -11.2 -3.5525 | overlap 601269 ACCCTGGTTGGCATC TGGCCG-GCGGGGTTGGACGCCACGG CGC CGGTGCCG-CCGACCCTGCTCGACCG TTTGCGGGCCTATAT Rru_A0507 599246 - 602065 + | Alpha amylase, catalytic region Rru_A0508 603056 - 602172 - | aminotransferase TERM 682 603166 - 603132 - H 76 -14.3 -2.68259 | gap 1, overlap 603129 603121 AAGACTAGGAGAGTA GCCGTCCGCCGGGGGA TCTG TCCACCGGCAGA-GGC CCCCGGCAGAGAGAT Rru_A0509 603321 - 603644 + | hypothetical protein Rru_A0510 603951 - 603655 - | hypothetical protein Rru_A0511 606573 - 603964 - | DEAD/DEAH box helicase TERM 683 605347 - 605367 + g 70 -2.5 -4.6902 | opp_overlap 605347, overlap 605348 GGGTGCCGGCAGCAA CTGGCTGAT CAG ATCAGCAAC TTTTTCCGATTCTCC TERM 684 605822 - 605798 - G 93 -5 -5.31059 | overlap 605800 AGATCAATTAAAAAA TCCTTGCCGA GCACA TTGGCAAGAA GGTGCAGGCGCTCCT Rru_A0512 607532 - 606570 - | hypothetical protein Rru_A0513 607678 - 608043 + | hypothetical protein TERM 685 608493 - 608480 - g 71 -9.5 -3.78934 | opp_overlap 608486 608490 CGGTTTCGACAAGAA CGGCG AGGT CGCCG ACGCCCTGTTCGATC TERM 686 609339 - 609390 + G 72 -13.6 -3.21099 | overlap 609341 609342 GGCGCCGACCACCGC GATCCTAAGGGGGCAAGCGGGAAG CTTG CTCCCCGCTCGCCCCTCTAGGCTG TTGATCGTCAAGCAA TERM 687 609341 - 609388 + G 81 -16.2 -3.17051 | overlap 609339 609342 CGCCGACCACCGCGA TCCTAAGGGGGCAAGCGGGAAG CTTG CTCCCCGCTCGCCCCTCTAGGC TGTTGATCGTCAAGC TERM 688 609342 - 609387 + G 93 -19.7 -2.50016 | overlap 609341 609339 GCCGACCACCGCGAT CCTAAGGGGGCAAGCGGGAAG CTTG CTCCCCGCTCGCCCCTCTAGG CTGTTGATCGTCAAG Rru_A0514 608283 - 609386 + | dihydroorotate dehydrogenase 2 TERM 689 609410 - 609439 + F 71 -9.3 -3.76224 | gap 1 TCGTCAAGCAAATCG TCGTCG-CGCTCTG CTC CAGAGCGTCGGGGA TTTGCTCCATAAGGA TERM 690 609476 - 609488 + G 75 -4.7 -4.58663 | ACCGATGACCTCCCC CGTCG CCG CGCCG TTTTTCGCCCCTGGT TERM 691 609863 - 609885 + G 74 -5.5 -4.52589 | gap 1, overlap 609866 609867 CGTCGCCCTTGTCAC CG-ATCCGGC CAAG GCCGGCTTCG TTTTGTGTACCGGCC Rru_A0515 609465 - 610352 + | HAD family hydrolase TERM 692 610423 - 610445 + G 83 -12.6 -4.15788 | opp_overlap 610422 TGACCCTGATCAGAG CGGCGCGGCC CGG GGATGCGCCG TTTCTTCCCCAGATT Rru_A0516 610407 - 610919 + | GCN5-related N-acetyltransferase ppnK 611725 - 610916 - | inorganic polyphosphate/ATP-NAD kinase TERM 693 611134 - 611116 - G 75 -13.8 -3.30124 | CGGTATCGGGCAGAA CGGCGCCG CGC CAGCGCCG GGGGCGGAAGGCGCT Rru_A0518 612889 - 611792 - | GTP cyclohydrolase subunit MoaA Rru_A0519 613125 - 612937 - | hypothetical protein TERM 694 613312 - 613322 + G 70 -2.4 -4.58283 | overlap 613280 TGGAGCTCGACCGTG AGCG AGA CGCC TTTTTCGCCCCATTC TERM 695 613518 - 613489 - g 84 -14.3 -3.9461 | CTGCTGGAAGAAGAA GGCGAGGCCTTCG ATCC CGAAACCCTCGCC CTGCTCGCCGACAGC Rru_A0520 613309 - 613983 + | hypothetical protein TERM 696 614216 - 614232 + F 70 -4.4 -4.56597 | gap 1 GTGTCTTGACGGAAG CGGTCTC GAGC GAG-CCG TTTTTCCGAAAAACG TERM 697 614663 - 614702 + G 89 -17 -3.53091 | gap 1, opp_overlap 614644, overlap 614664 AGCGTGGCGGCGATG GCCCCGGCCCCG-GCCCGC GCC GCGGGCTCGGGTCCGGCGA TTTCGGAAGGCGGCT TERM 698 614664 - 614701 + G 95 -20.5 -2.71712 | gap 1, opp_overlap 614644, overlap 614663 GCGTGGCGGCGATGG CCCCGGCCCCG-GCCCGC GCC GCGGGCTCGGGTCCGGCG ATTTCGGAAGGCGGC Rru_A0521 614264 - 617092 + | CheA Signal transduction histidine Kinases (STHK) Rru_A0522 617272 - 617643 + | response regulator receiver domain-containing protein Rru_A0523 617675 - 618838 + | chemotaxis-specific methylesterase Rru_A0524 618843 - 619685 + | MCP methyltransferase, CheR-type Rru_A0525 620438 - 619719 - | two component transcriptional regulator / cell cycle transcriptional regulator CtrA TERM 699 620847 - 620869 + G 70 -10.6 -3.53012 | opp_overlap 620802 GCCCGCGACGGCCGG CCGATCACCT GCG AGGTCATCGG TTTCCGCGCCGCCCG TERM 700 621917 - 621929 + G 76 -6.2 -4.56597 | CATCCATTATCATCC GGCG CTCGA CGCC TTTTTGACCCAGGCC fliI 620682 - 622109 + | flagellum-specific ATP synthase Rru_A0527 622208 - 622660 + | hypothetical protein Rru_A0528 623867 - 622611 - | heat shock protein DnaJ-like Rru_A0529 624309 - 623878 - | hypothetical protein Rru_A0530 625209 - 624436 - | ferredoxin--NADP+ reductase Rru_A0531 627191 - 625425 - | hypothetical protein TERM 701 625677 - 625665 - G 70 -2.6 -4.66833 | GTCGAACTGCAAAAA GCCG AGCCG CGAC AGATCCACCTCGACC Rru_A0532 628057 - 627284 - | cobyrinic acid a,c-diamide synthase TERM 702 627793 - 627825 + g 73 -3.9 -4.63218 | opp_overlap 627790, overlap 627803 TCACATCGAAATTGC CCGCCGGATAGGCGG TCG CCGCCTGATTGAGGG TTTTCTTGCCCGACA Rru_A0533 629211 - 628105 - | GTP-binding signal recognition particle TERM 703 629778 - 629818 + G 75 -13.2 -3.4252 | GCTGATGGCCGCCCC CCTGCCGGTGGTCGCCCA GGTGG TGGGCGCCGATCCGCAGG TTCTGGTCAATGCCC Rru_A0534 629431 - 629958 + | hypothetical protein Rru_A0535 630982 - 630068 - | hypothetical protein TERM 704 631196 - 631216 + G 75 -13.9 -3.28712 | GCTTCGGCGCGCTTT GGCGACGGC GTG GCCGCCGCC TTATGGGAGCGCGAC TERM 705 631895 - 631848 - g 74 -12.1 -3.57263 | gap 3, opp_overlap 631848 631847 ATGCCTATGTGCAAA GCCGGCGGATCGAGCGCGC-CAAG ACC CTTCTGCGCGC-CGAT-CGCCTGC CTTTGGCCGAAATCG TERM 706 631960 - 632012 + G 78 -9.9 -4.08111 | gap 4, opp_overlap 631968, overlap 631972 CACCGCCCGCTTCCG CCAAGCCACCGGCCAGACGCCCGGGCG TTA CGCCCGGGAG---GGC-GGTGGTCTGG TTTCTGATGTATTTC Rru_A0536 631118 - 632032 + | AraC family transcriptional regulator TERM 707 632762 - 632772 + G 74 -2.4 -4.84363 | overlap 632748 TCGCCACTCGACGAT CAGC GAG GCGG TTTTTCGTGGTTTCA Rru_A0537 632163 - 633422 + | hypothetical protein Rru_A0538 633427 - 633912 + | hypothetical protein TERM 708 634024 - 634056 + T 79 -7.8 -4.53303 | gap 2, opp_overlap 634024, overlap 634015 634027 634028 TGATAGGGGAGCGAA TCCTCGTCGCGCTCTG GTT CAGAGGGCGA-G-GGA TTTTCTCTGCGCCTA flhA 636231 - 634069 - | flagellar biosynthesis protein FlhA Rru_A0540 637594 - 636257 - | two component, sigma54 specific, Fis family transcriptional regulator Rru_A0541 638462 - 637644 - | MotA/TolQ/ExbB proton channel TERM 709 638354 - 638331 - G 71 -3 -4.70659 | gap 1, overlap 638332 638333 GGGCAGATCGAAAAA GGCCCGGG-GG GAA CCGCCCAGAAC GAGAGCGGTGACGAT Rru_A0542 639019 - 638672 - | flagellar motor switch protein fliH 639766 - 639032 - | flagellar assembly protein H TERM 710 639105 - 639088 - G 78 -14.1 -3.53012 | CGGGGGCGTCGGAAA CCGGCGC GGCG GCGCCGG CCAGATGGCGGTCGA fliG 640803 - 639784 - | flagellar motor switch protein G TERM 711 640004 - 640020 + g 71 -2.9 -4.59773 | overlap 640006 GAGGCGCCTTTGAGG GCCAGAC CCA GTTTGTC TTTTTCGACGTGGCG fliF 642519 - 640864 - | flagellar MS-ring protein TERM 712 642846 - 642860 + r 90 -5.6 -5.24129 | CAATTCAGGCCATTT TGCTCG AAT CGCGCA TTTTTTATGAGGGGG TERM 713 643067 - 643042 - R 100 -14.7 -5.55769 | GGCTATAACAAAAAA CCCCTCCGGCC AGAA AACCGGAGGGG TGGGATGCGAAAAAC Rru_A0546 645090 - 643105 - | hypothetical protein TERM 714 645277 - 645297 + r 71 -6 -4.35885 | opp_overlap 645271, overlap 645273 GCCCTAAAAGCCGAA GCCCCGGC ATCAG GTCGAGGC TTTGTTCTCGTCGGT Rru_A0547 646023 - 645286 - | flagellar hook capping protein TERM 715 645766 - 645790 + g 73 -6.3 -4.30441 | overlap 645752 CGCCATGGCCGCCTG GCTGTTGCCCG AGA CGGCGAGCAGC TTTTCCATGTTGTCG Rru_A0548 647875 - 646052 - | flagellar hook-length control protein TERM 716 646865 - 646877 + g 72 -6.9 -4.25104 | overlap 646842 CGTCGGCTGGGCTGG CGCCG GTG TGGCG TTTTGCTGGCGGGCC TERM 717 646958 - 646993 + g 74 -7.5 -4.21194 | gap 1 GCCGGTCACGCTTTG GGCGCCCTGGGCCC CGGCCTGTT GGGCCT-GGGCGGC TTTTGGATCCTGGGA Rru_A0549 649259 - 648132 - | hypothetical protein Rru_A0550 651189 - 649402 - | TPR repeat-containing protein TERM 718 649666 - 649626 - G 78 -14.5 -3.30443 | overlap 649658 CGATCACCAGATCAA GGGCGGCGACGACGCGGGC GGT GGCGGCGAAATCGCCGCCC GGCGCTAGCGCCGCG TERM 719 651066 - 651030 - G 70 -10.8 -3.52539 | gap 1, overlap 651031 651041 CAAGGCCAAGCAGAA TGCGGCCA-AGACCGGC CAGG GCCGGTCCGTGGCCGGG GTGGCGGTCGAGCAC TERM 720 651940 - 651968 + Gr 72 -12.3 -3.02263 | overlap 651918 GGCGATGCCGCCGGC GCTTTGGCCTGCC AGC GGCGGGCCGTGGC TCTTGACCCCGATCT TERM 721 652524 - 652509 - gR 74 -7.5 -4.1899 | CGATTTCACCGAAAA CGCCG TACGCG CGGCG CCGCTGGCCGCCTTC Rru_A0552 653449 - 652820 - | GCN5-related N-acetyltransferase Rru_A0551 651316 - 652941 + | TPR domain-containing protein Rru_A0553 655036 - 653714 - | response regulator receiver Signal transduction histidine kinase TERM 722 655197 - 655159 - R 74 -11.7 -3.53012 | gap 1, opp_overlap 655158 655162, overlap 655138 655186 655188 CTCCCGCCCGGGAAA CG-CCGGCCCTGCCTTCC GCTA GGAAGACAGGGCTGTTCG ATTTCGAACGACGCC TERM 723 655162 - 655193 + r 93 -16.6 -3.27525 | opp_overlap 655159 655186 655188, overlap 655158 CCGCCCGGGAAACGC CGGCCCTGCCTTCC GCTA GGAAGACAGGGCTG TTCGATTTCGAACGA Rru_A0554 656531 - 655212 - | Rh-like protein/ammonium transporter Rru_A0555 656884 - 656546 - | nitrogen regulatory protein P-II TERM 724 656936 - 656959 + r 71 -5.8 -4.34488 | opp_overlap 656934 656935 ATGACTTCGGAAATC CCCCTGGGCG TCGC CGCCCGCCGG TTTCTTGTCGGTCTG TERM 725 657122 - 657092 - R 71 -8.3 -4.09685 | gap 1, opp_overlap 657092, overlap 657094 657095 CCGGAGTCTCGAAAA GA-TGTGGTCCCGC TAGC GCAGGACCACGGTC TTCGTGCCGTTGATC TERM 726 657119 - 657094 - R 77 -11.1 -3.64716 | opp_overlap 657092, overlap 657092 657095 GGAGTCTCGAAAAGA TGTGGTCCCGC TAGC GCAGGACCACG GTCTTCGTGCCGTTG TERM 727 657118 - 657095 - R 77 -14.6 -2.78508 | opp_overlap 657092, overlap 657094 657092 GAGTCTCGAAAAGAT GTGGTCCCGC TAGC GCAGGACCAC GGTCTTCGTGCCGTT Rru_A0556 657997 - 657104 - | formyltetrahydrofolate deformylase Rru_A0557 658159 - 659049 + | methenyltetrahydrofolate cyclohydrolase Rru_A0558 661115 - 659064 - | diguanylate cyclase/phosphodiesterase TERM 728 659986 - 659951 - G 70 -2.4 -4.59773 | opp_overlap 659981, overlap 659952 659953 CGTCATTGGGAAAAA GGGTGATGCCGATCGA ACTG CCGATCAGCACCTCGT GCCCGCCCTCCAGGG TERM 729 659981 - 660019 + g 77 -13 -3.55563 | opp_overlap 659953 659952 659951 AACTGCCGATCAGCA CCTCGTGCCCGCCCTCCA GGG TGAAGGGCCGGCGCAGGG TTTCAAGGATGCGGT TERM 730 661219 - 661206 - R 70 -4.5 -4.45664 | GGAATTTAATTAAAA TGCGC TGCA ACGCA ACCATTCCTCCATGA Rru_A0559 662003 - 661200 - | Alpha/beta hydrolase fold TERM 731 661961 - 661934 - G 80 -9 -4.2828 | opp_overlap 661955 CGCCATGGACGAAAA CCAGCGGTGGCC GGTC GGCCATCTCCGG ATCGGCGGTGGTTGG TERM 732 662495 - 662507 + G 74 -2.6 -4.72272 | overlap 662493 CTTGATGGGCTATGA GGTG CTGAC CGCC TTTTTCCTGGAGGCG TERM 733 663349 - 663377 + G 81 -11 -4.04318 | gap 1, overlap 663349 CCGTTCTCGCCGGCT GGG-TGACGACCG AGGT CGGTCGCCAGCCC TTTGTCGTCTATGGG Rru_A0560 662187 - 663617 + | cytochrome bd ubiquinol oxidase, subunit I TERM 734 663799 - 663819 + G 72 -11.8 -3.54638 | overlap 663796 TGGCTGGTTCTTGGC GGCGGCGG CCTGT TCGCCGCC TTTCCCGAAGCTTAT Rru_A0561 663607 - 664608 + | cytochrome bd ubiquinol oxidase, subunit II Rru_A0562 665590 - 664670 - | peptidase S1 and S6, chymotrypsin/Hap TERM 735 665449 - 665420 - G 72 -7 -4.26076 | opp_overlap 665419 CCATGGCCAGGAAAA GGCGTCGACGGC GCGGCG GTCATCGGCGCC CTTGATGCCGGGCTT Rru_A0563 666852 - 665587 - | twin-arginine translocation pathway signal TERM 736 666803 - 666813 + g 89 -8.2 -5.00884 | GCCCGTCGCCCCACC CCGG AGG CCGG TTTTTTCAAAGCCGT Rru_A0564 667041 - 668165 + | hypothetical protein TERM 737 668174 - 668219 + T 95 -14.5 -4.09511 | overlap 668177 GGTGTGACCGTCCAC CAGCGGCGAGCGGAGAGGGTC GGGG GGCCGGCTCCGCCCGCCGTCG TTTTGGAGAGGTCTT TERM 738 668177 - 668216 + T 87 -17 -3.08211 | overlap 668174 GTGACCGTCCACCAG CGGCGAGCGGAGAGGGTC GGGG GGCCGGCTCCGCCCGCCG TCGTTTTGGAGAGGT Rru_A0565 668568 - 668233 - | hypothetical protein TERM 739 668381 - 668408 + g 73 -4.1 -4.63486 | gap 1 ATCTTGCCGACGCCA TCGGCATTGGCC CTGGT GACCG-TGCCGA TTTTCTTGCCCGCCT TERM 740 668743 - 668705 - R 100 -23.2 -3.05384 | opp_overlap 668698 668697 CGGTGCGGGATTTAA GGCGCAGACGCCCGGC CGCTTTC GCCGGGCGTCTGCGCT GCAAGCGGTTTCAGG Rru_A0566 672314 - 668754 - | hypothetical protein TERM 741 668793 - 668816 + g 72 -11.6 -3.54424 | CCGGGCCTGGGGGGG CGGGGCGTCC GGGG GGGCGCCGCG TTTGCCCAGGTGGCG TERM 742 669806 - 669834 + g 85 -10.2 -4.18018 | gap 1 TCGCCGCCAGCAGGG CCGCGCCATCGCC CTTG GGCGGCGG-GCGG TTTTCCATCAGGGCG TERM 743 672634 - 672680 + G 72 -13.6 -3.14344 | opp_overlap 672657 CTTGTTCTTTGGGGC GGGCGGGCTTGACCGGGCGG AAACCGC CCGCATGGTCGATCACGCCC TTGATGGCAGCGATG Rru_A0567 672593 - 674035 + | microcin-processing peptidase 2 Rru_A0568 676118 - 674130 - | chemotaxis sensory transducer TERM 744 674455 - 674429 - G 74 -12.2 -3.56092 | opp_overlap 674431 674449 TGACGATCCCCGAAA TCGCCGCCACCG CTT CGTTGGTGGCGA GCTGGACGGCGCCGA TERM 745 675359 - 675382 + g 70 -10.2 -3.69323 | gap 1 CCTCGCGGGTGATCG CCGCCCCGGCG TCG CGCAGG-GCGG TTTCCATCGTGGTGA Rru_A0569 676723 - 676379 - | chorismate mutase Rru_A0570 678153 - 676783 - | glutamate--cysteine ligase TERM 746 676986 - 677018 + g 78 -10.5 -4.07885 | overlap 676945 CCAGGGCGCGCAGGG CGACGTCTTGCAAGG TGC CCTTGCGGAACGGCG TTTTGAGGGCCAGTC Rru_A0571 678989 - 678246 - | hypothetical protein TERM 747 679919 - 679960 + G 70 -11 -3.52073 | gap 2 CCGCCCATCTGGCTT GGCAGATCTGGCGGGTCGAT ATTC AT-GACTCGCCCG-TCTGCC TTATGATCTTCAAGA Rru_A0572 679120 - 680043 + | 4-hydroxybenzoate octaprenyltransferase Rru_A0573 680033 - 680683 + | hypothetical protein TERM 748 680953 - 680921 - g 82 -6.2 -4.72272 | overlap 680922 680923 680945 CTGCTCGACGAAAAA GGGCCGGCCGTTTT GTTCG AAAACGTCCGCCGC CCCGATGGCAGCGCC Rru_A0574 680792 - 682315 + | 3-octaprenyl-4hydroxybenzoate decarboxylase TERM 749 682376 - 682412 + F 95 -13.7 -4.12279 | gap 1, opp_overlap 682376 682377, overlap 682377 682378 GGCCCACCTAACTAA GG-GCACGGGCGCGAC GTCCCG GCCGCGCCCGTGCGTC TTTCGTTTCCCTTTC TERM 750 682411 - 682376 - f 81 -13.9 -3.37344 | opp_overlap 682376 682377 682378, overlap 682377 GGCCCACCTAACTAA GGGCACGGGCGCGAC GTCCCG GCCGCGCCCGTGCGT CTTTCGTTTCCCTTT TERM 751 682410 - 682377 - f 83 -17.4 -2.62192 | opp_overlap 682376 682377 682378, overlap 682376 GCCCACCTAACTAAG GGCACGGGCGCGAC GTCCCG GCCGCGCCCGTGCG TCTTTCGTTTCCCTT TERM 752 682377 - 682410 + F 90 -15.2 -3.64028 | opp_overlap 682377 682376, overlap 682376 682378 GCCCACCTAACTAAG GGCACGGGCGCGAC GTCCCG GCCGCGCCCGTGCG TCTTTCGTTTCCCTT TERM 753 682378 - 682409 + F 86 -18.7 -2.77332 | opp_overlap 682377 682376, overlap 682377 682376 CCCACCTAACTAAGG GCACGGGCGCGAC GTCCCG GCCGCGCCCGTGC GTCTTTCGTTTCCCT TERM 754 683155 - 683132 - g 72 -11.6 -3.53012 | opp_overlap 683139 683142 CGGCTTGGCGCCAAA CGGCTGGCGA CCGG CCGCCTGCCG GTGGTTTTCGATCCC TERM 755 683139 - 683159 + G 76 -8.2 -4.18018 | opp_overlap 683132, overlap 683142 GCGCCAAACGGCTGG CGACCGGC CGCCT GCCGGTGG TTTTCGATCCCCGGG TERM 756 683662 - 683644 - g 70 -5.9 -4.18018 | overlap 683645 CTTCCGCATCGAAAA GGGCGTG CTGAC CACGCCG GTCAACGAGATCACC Rru_A0575 682439 - 683797 + | microcin-processing peptidase 1 TERM 757 683807 - 683826 + F 79 -16.4 -2.78384 | GGCTGAGCCCGGCCG CCCCCGGC CGCT GCCGGGGG TGTCATAAAACCGCC TERM 758 683849 - 683837 - f 74 -6.9 -4.36914 | GGGGGTGTCATAAAA CCGCC AGC GACGG AGGGCGGAAGACCCG TERM 759 685859 - 685833 - g 71 -9.2 -3.76125 | GCAGCTTAAGTGAAA CCGCCCGGGGGG TCG CCGCCCGCTCGG CCGAGGGCGGCGAGG Rru_A0576 683909 - 685975 + | methyl-accepting chemotaxis sensory transducer Rru_A0577 686970 - 685999 - | hypothetical protein Rru_A0578 687205 - 688182 + | metallophosphoesterase Rru_A0579 688229 - 689302 + | glycosyl transferase, group 1 Rru_A0580 689394 - 689828 + | OsmC-like protein TERM 760 689851 - 689897 + F 72 -13 -3.09004 | gap 1, overlap 689851 CCAGGTCCATTTTTT GACGGGCACACCGTGGTCGGC CATCGT GCC-ACCACAGTGTGCCCGAA TGCTTTTGCCGGTGG TERM 761 690781 - 690759 - g 72 -5.4 -4.36914 | opp_overlap 690759 GGCGTTTGCACAAAA GCCTGAAGGC CAA GCATCCGGGC TTGCTGACCATCGTC TERM 762 691161 - 691217 + G 75 -13.7 -3.29144 | gap 3, opp_overlap 691212 691213, overlap 691162 691213 TGCTCACCGATGCCG TCGCCCGT-CGCCGCATGGCCCGC-GCC GCCC GGCTGTGGGCCGAG-GGCGAAAGGGCGG TTCTCGACCGCGTCC TERM 763 691162 - 691216 + G 71 -15 -2.57344 | gap 3, opp_overlap 691212 691213, overlap 691161 691213 GCTCACCGATGCCGT CGCCCGT-CGCCGCATGGCCCGC-GCC GCCC GGCTGTGGGCCGAG-GGCGAAAGGGCG GTTCTCGACCGCGTC Rru_A0581 690002 - 691318 + | three-deoxy-D-manno-octulosonic-acid transferase-like Rru_A0582 691305 - 692300 + | lipid-A-disaccharide synthase TERM 764 693224 - 693240 + G 100 -6.5 -5.61881 | CGACTTGGCCCGACT GATGGCC TGC GGCGATC TTTTTGTTTTTCCCA Rru_A0583 692316 - 693602 + | glycosyl transferase, group 1 TERM 765 693621 - 693606 - f 70 -3.9 -4.58395 | opp_overlap 693609 GTGAGCGCGTAAAAA GGGCG CTCAAC CACCC TGGGGCTTGCGCGGT TERM 766 693701 - 693724 + G 73 -3.8 -4.62069 | gap 1 CCTCGTCGCTGTTCC TGGTCG-CCGC CGG GCTGTCGATCA TTTTTGGCGTGACCC Rru_A0584 693637 - 695478 + | inner-membrane translocator Rru_A0585 695475 - 696254 + | ABC transporter component TERM 767 696488 - 696476 - g 73 -6.2 -4.41494 | CACCGCCAAGGAAAA GCCC ATGGA GGGC GAAGTTGTGGCGGTT Rru_A0586 696375 - 696662 + | chaperonin Cpn10 TERM 768 697942 - 697920 - g 72 -5.5 -4.33004 | opp_overlap 697936, overlap 697917 697921 697923 AGTGAAGGAAAAGAA GGACCGCGT GGACG ACGCGATGC ACGCCACCCGTGCCG groEL 696742 - 698388 + | chaperonin GroEL TERM 769 698452 - 698417 - T 100 -17.6 -3.60792 | opp_overlap 698417 698422, overlap 698422 TCGCCAAGCGCCAAA GGAAAGGGCCGTCTCC GCAA GGAGGCGGCCCTTTTC CATTGTGAGGGGGGG TERM 770 698417 - 698453 + T 88 -19.6 -2.57132 | gap 1, opp_overlap 698417 698422, overlap 698422 TCGCCAAGCGCCAAA GG-AAAGGGCCGTCTCC GCAA GGAGGCGGCCCTTTTCC ATTGTGAGGGGGGGG TERM 771 698447 - 698422 - T 100 -16.1 -4.06903 | opp_overlap 698417 698422, overlap 698417 AAGCGCCAAAGGAAA GGGCCGTCTCC GCAA GGAGGCGGCCC TTTTCCATTGTGAGG TERM 772 698422 - 698447 + T 100 -18.3 -4.3208 | opp_overlap 698422 698417, overlap 698417 AAGCGCCAAAGGAAA GGGCCGTCTCC GCAA GGAGGCGGCCC TTTTCCATTGTGAGG Rru_A0588 699661 - 698645 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like Rru_A0589 700650 - 699658 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 773 700206 - 700228 + g 75 -9 -4.09685 | AAAGGCCGATGCGGC GGGCGGCCTC GGG GATGCCGACC TTTTCCAGCATCCCG Rru_A0590 701558 - 700650 - | binding-protein dependent transport system inner membrane protein Rru_A0591 702481 - 701555 - | binding-protein dependent transport system inner membrane protein TERM 774 702088 - 702054 - G 71 -9.3 -3.78775 | overlap 702055 GGCGCCATGACGAAA TTGGGAATGACGATG CCGAC CATCGCCACCCCCAT CACCGCGAAATCGCC Rru_A0592 704298 - 702661 - | extracellular solute-binding protein TERM 775 702963 - 702988 + g 73 -6.1 -4.42238 | gap 1, overlap 702964 TGTAATCGGCGATCC AGCCTTCGCGGG CGA CCTG-GAAGGCC TTTTGCTTGAGGTCG Rru_A0593 704544 - 705452 + | putative sulfite oxidase subunit YedY TERM 776 705476 - 705505 + G 73 -14.3 -3.16881 | gap 1, opp_overlap 705478 GGCTCGGTTTTGAAG GACCGCGA-CCGCC TGG GGCGGATCGCCGTC TTCGTCGCCTGCCTG TERM 777 705658 - 705711 + G 90 -2.1 -5.4492 | gap 1, overlap 705634 705660 705664 CACCCCGGCGCGGCT GCTGTGGGGCTGGACCTTTCCGCTGC GCC GCCGCCGCATGGTCGGGCTCTTC-GC TTTTTTCTATGTCTG Rru_A0594 705452 - 706078 + | putative sulfite oxidase subunit YedZ Rru_A0595 706239 - 708221 + | transketolase Rru_A0596 708365 - 709429 + | fructose-1,6-bisphosphate aldolase TERM 778 709512 - 709491 - f 80 -14.4 -3.06696 | opp_overlap 709491 GCCGCCGCCAACACA GCCCCGCC CGATCC GGCGGGGC TTTTTCATGGGCATG TERM 779 709491 - 709512 + F 100 -14.4 -4.72986 | opp_overlap 709491 GCCGCCGCCAACACA GCCCCGCC CGATCC GGCGGGGC TTTTTCATGGGCATG TERM 780 709627 - 709611 - f 89 -5 -5.1764 | opp_overlap 709610 709611, overlap 709605 GAGAGAATAGAAAAA CTCCGC ACAAG GCGGGG CTTTTCATTCAACGA Rru_A0597 709725 - 710399 + | hypothetical protein TERM 781 710505 - 710495 - f 75 -8.2 -4.16943 | opp_overlap 710494 CGCCAGACCCCAAAA CCGC TTC GCGG GGCTTTTTCGTGGGT Rru_A0598 710794 - 711822 + | phosphate ABC transporter, periplasmic binding protein Rru_A0599 712017 - 713414 + | phosphate ABC transporter permease Rru_A0600 713486 - 714766 + | phosphate ABC transporter permease Rru_A0601 714844 - 715590 + | phosphate ABC transporter permease TERM 782 715602 - 715624 + F 75 -7.7 -4.21812 | gap 1, overlap 715602 CTGATCCCCCGCCGG CCC-CTCCCT TGCC GGGGAGCGGG TTGTTTTCGGTGGCC Rru_A0602 715656 - 716387 + | phosphate uptake regulator, PhoU Rru_A0603 716384 - 717085 + | two component transcriptional regulator Rru_A0604 717099 - 717278 + | hypothetical protein TERM 783 717325 - 717288 - f 73 -4.9 -4.62069 | opp_overlap 717288 717318, overlap 717292 717318 717323 GCCTGAGCTTAAAAA GGAATCGATAACTTCCA GTGA TCGAAGTTATCAGATCC ATTTGTTGGACTGAT TERM 784 717463 - 717505 + G 70 -11.9 -3.445 | overlap 717463 CGGGGATGTTCGCCG CCCTTCCCGGCCTTGGC TTGGCCTTT GCCGTGGCCGGGAGCGG GTTTTTGCTCCATCG TERM 785 717463 - 717506 + G 100 -11.7 -4.7497 | gap 1, overlap 717463 CGGGGATGTTCGCCG CCC-TTCCCGGCCTTGGC TTGGCCTTT GCCGTGGCCGGGAGCGGG TTTTTGCTCCATCGC TERM 786 717915 - 717862 - g 90 -19.1 -3.01712 | opp_overlap 717862 717896 717898 TGGTCGCGGCCAATA CGGTGACGCAGGCCGATGAC-GAGG ACGTGG CCTATGCCATC-GCCTGCGTCACCG TGTTCGGGACGCTGG TERM 787 717862 - 717915 + G 90 -19.1 -3.02144 | opp_overlap 717862, overlap 717896 717898 TGGTCGCGGCCAATA CGGTGACGCAGGCCGATGACG-AGG ACGTGG CCTATGCCATC-GCCTGCGTCACCG TGTTCGGGACGCTGG TERM 788 717898 - 717936 + G 75 -15.3 -2.71322 | gap 1, opp_overlap 717862, overlap 717862 717896 AGGACGTGGCCTATG CCATCGCCTGCGTCACCG TGTT CGG-GACGCTGGCGATGA TCCTCTATCCGTTGC Rru_A0605 717390 - 718445 + | hypothetical protein Rru_A0606 718445 - 719353 + | LysR family transcriptional regulator Rru_A0607 719907 - 719392 - | adenine phosphoribosyltransferase Rru_A0608 720126 - 721106 + | TRAP transporter solute receptor TAXI family protein Rru_A0609 721254 - 721682 + | hypothetical protein TERM 789 721925 - 721878 - g 85 -13.4 -4.08767 | opp_overlap 721878, overlap 721879 GTCACGGCCGGAAAA CTGGCCCGCCAGTTCGATGAGC ATCT GCTCACCGAACAGGAACGCCAA TTGGCCGAAGAGATT TERM 790 721924 - 721879 - g 74 -14.7 -3.05046 | opp_overlap 721878, overlap 721878 TCACGGCCGGAAAAC TGGCCCGCCAGTTCGATGAGC ATCT GCTCACCGAACAGGAACGCCA ATTGGCCGAAGAGAT Rru_A0610 721791 - 722924 + | hypothetical protein Rru_A0611 723147 - 723665 + | hypothetical protein TERM 791 723657 - 723696 + T 81 -16.5 -2.92175 | gap 1, opp_overlap 723656, overlap 723653 723650 CCGGCCTGGAACGAT CGC-GCCTAAGGCGCGTA AGATC TGCGCGCCTGAGGCGGCG TGTGGTCTGTTACCA TERM 792 723711 - 723739 + T 73 -13.2 -2.72144 | opp_overlap 723716, overlap 723716 GTGTGGTCTGTTACC AAAAAGGCGCCC GAACA GGGCGCCTTTTG CTTTGGGGGCACTAA TERM 793 723716 - 723734 + T 100 -13.1 -4.54727 | opp_overlap 723716, overlap 723711 GTCTGTTACCAAAAA GGCGCCC GAACA GGGCGCC TTTTGCTTTGGGGGC TERM 794 723734 - 723716 - T 100 -13.1 -4.72272 | opp_overlap 723716 723711 GTCTGTTACCAAAAA GGCGCCC GAACA GGGCGCC TTTTGCTTTGGGGGC TERM 795 723759 - 723775 + T 84 -9.3 -4.56597 | opp_overlap 723760, overlap 723760 GGGGGCACTAAAAAA ACGCCCG GAG CGGGCGA TTTTTCACAAGAAGG TERM 796 723760 - 723774 + T 76 -12.8 -3.33744 | opp_overlap 723760, overlap 723759 GGGGCACTAAAAAAA CGCCCG GAG CGGGCG ATTTTTCACAAGAAG TERM 797 723774 - 723760 - T 100 -12.8 -5.52384 | opp_overlap 723759 723760 GGGGCACTAAAAAAA CGCCCG GAG CGGGCG ATTTTTCACAAGAAG TERM 798 724596 - 724563 - T 84 -11.7 -4.02535 | gap 1, opp_overlap 724558 TGATAAGGAAGCAAA TCTCCGTCGCGCTCTG GTC CAGAGCGCT-CGGGGA TCCACTTTAATCTGT Rru_A0612 727912 - 724727 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 799 725854 - 725885 + g 75 -11.6 -3.66018 | gap 1 CTGTAAGCAGTTTAT CGCCAACGGCATGCC CCA GGC-TGTCGTTGACG TTCTTGAAGTGATCG TERM 800 726334 - 726366 + g 75 -11.9 -3.72576 | overlap 726335 CGTATTCGATGGTGC CCCGGGCATCGGTGA TGA TCACCGAGGCCGGGC TTTGCTCGACGGCGC TERM 801 726335 - 726365 + g 76 -15.4 -2.83403 | overlap 726334 GTATTCGATGGTGCC CCGGGCATCGGTGA TGA TCACCGAGGCCGGG CTTTGCTCGACGGCG TERM 802 727013 - 727001 - G 79 -4.7 -4.77036 | GGCGAGCAGCAAAAA CGCCG TGA CGGTG GCGCTGATGATCAGG TERM 803 727899 - 727887 - G 75 -3.3 -4.84492 | TCAAGGATAAGAAAA GCCAG GAC CCAGC GCTTCATGGGCATGC TERM 804 728016 - 728037 + r 76 -9.3 -4.0371 | overlap 728018 CCGCTCGCTTTTTTT GCCGCGGTG TTTT CGCCGCGTC TTTATCTCACCGGTA TERM 805 728018 - 728035 + r 73 -10.5 -3.61232 | overlap 728016 GCTCGCTTTTTTTGC CGCGGTG TTTT CGCCGCG TCTTTATCTCACCGG Rru_A0613 728883 - 728248 - | bacteriochlorophyll 4-vinyl reductase Rru_A0614 729809 - 728922 - | hypothetical protein Rru_A0615 730514 - 730047 - | photosynthetic complex assembly protein Rru_A0616 731229 - 730555 - | photosynthetic complex assembly protein TERM 806 731167 - 731119 - G 100 -19.6 -3.66654 | gap 2, opp_overlap 731121 CAGCCGAATGTGAAA CACCCGGAGGGCAAGGGCGCGCCG TGT CGGCGCGCCCT-G-CCACAGGATG AATTCGCCCGGCGGC Rru_A0617 732018 - 731245 - | photosynthetic reaction center, H-chain Rru_A0618 733486 - 732044 - | PUCC protein TERM 807 732198 - 732177 - G 74 -7.9 -4.18644 | opp_overlap 732180 ACCAGATAAACGAAA CCATAGCCC GTAT GGGCCGTGG TTAAGGCCTCGCCGA TERM 808 732287 - 732241 - G 79 -11.5 -3.84246 | opp_overlap 732280 CCGCCAACGAGGAAA CGCCATC-GCGCAAGCCGCCGCC AAG GGCAACGGCC-GCGCCGGTCGCG GTGGCCTGCACGGCG TERM 809 733099 - 733043 - G 100 -13.6 -4.77036 | gap 2 CCCGACCAGCAAAAA GGCGACGCCGGCGCACAGCTCGCCAACC ACG GGC-GGC-AGCGGCGCGGCGGTGTCCCC GGCCAGGACGAACAG TERM 810 733467 - 733433 - G 73 -9.1 -3.92522 | GGCGAAGGGCAGAAA CCGGGGCGCGACGCT TAGCC ATCGCCGCGCCAGGG AAGCGTTCAATCCGC Rru_A0619 734184 - 733474 - | Mg-protoporphyrin IX methyl transferase chlL 735071 - 734184 - | protochlorophyllide reductase iron-sulfur ATP-binding protein TERM 811 735120 - 735093 - R 76 -14.8 -2.62396 | overlap 735095 735097 TACTCCCTGACACGA GAGACCGCGGCC GTTA GGCCGCGACCCC TTCCGATACGTTTTC TERM 812 735118 - 735095 - R 75 -13.8 -2.85351 | overlap 735093 735097 CTCCCTGACACGAGA GACCGCGGCC GTTA GGCCGCGACC CCTTCCGATACGTTT TERM 813 735116 - 735097 - R 70 -12.8 -2.97747 | overlap 735095 735093 CCCTGACACGAGAGA CCGCGGCC GTTA GGCCGCGA CCCCTTCCGATACGT bchH 738834 - 735106 - | magnesium chelatase subunit H TERM 814 737574 - 737523 - GR 78 -6.6 -4.68103 | overlap 737526 737527 GGAAGTTGAACAAAA CGA-TGG-CGACCCGCCGCTCGGCCC GCTT GGCCCG-GCG-CAGGGCGACCAGTCG GGCGACGCGGGCGGC Rru_A0622 740449 - 738809 - | light-independent protochlorophyllide reductase subunit B TERM 815 740478 - 740468 - R 75 -8.2 -4.17089 | overlap 740469 CCTAAACTTTCAAAA GCGC GCG GCGC AGCAACGGGCGCGCG Rru_A0623 741776 - 740454 - | light-independent protochlorophyllide reductase subunit N TERM 816 741742 - 741704 - G 83 -15.3 -3.54741 | gap 1, overlap 741711 GACGATCCCCGCAAA CACCAAAGCTCGGGGACG AAGG CGTCCCCG-GCTCGGGCG GGTGGGAGTCGGACA TERM 817 741735 - 741711 - G 84 -13.6 -4.00532 | gap 1, overlap 741704 CCCGCAAACACCAAA GCTCGGGGACG AAGG CGTCCCCG-GC TCGGGCGGGTGGGAG Rru_A0624 742354 - 741773 - | 2-vinyl bacteriochlorophyllide hydratase TERM 818 742197 - 742174 - G 71 -12.4 -3.29144 | overlap 742157 742175 GCACCGGCGCCAGAA TGCCCTGGAC CACG GTCCAGGGCG AGCGGTCGCGGCGCG TERM 819 742196 - 742175 - G 74 -15.9 -2.57344 | overlap 742174 742157 CACCGGCGCCAGAAT GCCCTGGAC CACG GTCCAGGGC GAGCGGTCGCGGCGC TERM 820 742395 - 742381 - H 95 -12.8 -4.28774 | opp_overlap 742389 742390 TGAGCGAACCCAAAA GCCGGC CAA GCCGGC CCAGCGTAAGGGCAA TERM 821 743093 - 743142 + G 77 -12.9 -3.48924 | overlap 743071 GTCGGCGGAGTCGCG CGATGTCGAGGTCTTTGCCCGGA TGAT TTTGGGCGAGGATATCGACACCG TTCTGTCCGAGGTGG TERM 822 743361 - 743319 - g 90 -15.4 -3.83026 | opp_overlap 743345 GCGCGTGAGATTAAA CGCTGGATCGACGACGGGAC GAT GCCCCGCCGCCGGGTCAGCG ACGCCGCGATCGCCG Rru_A0625 742860 - 743405 + | hypothetical protein TERM 823 743505 - 743528 + F 74 -11 -3.54408 | gap 1, overlap 743498 743507 CCGTCTTTGCAGGTA G-GCCGCGGAG GGG CTCCGCGGTGC TTGATTTGGATAAGG TERM 824 743507 - 743525 + F 81 -16 -2.90283 | overlap 743505 743498 GTCTTTGCAGGTAGG CCGCGGAG GGG CTCCGCGG TGCTTGATTTGGATA TERM 825 743558 - 743542 - f 72 -10.9 -3.31144 | opp_overlap 743557, overlap 743556 743557 GCTTGATTTGGATAA GGCTTTC GGG GAAAGCC GTTGGCCGCGGGGGC TERM 826 743642 - 743620 - f 90 -19.2 -3.10164 | opp_overlap 743628, overlap 743624 CGAGCGACCACGGAA GGAACGGGCC TTG GGCCCGTTCC GGTTGCGGGTTCGGG TERM 827 743638 - 743624 - f 76 -12.8 -3.38316 | opp_overlap 743628, overlap 743620 CGACCACGGAAGGAA CGGGCC TTG GGCCCG TTCCGGTTGCGGGTT TERM 828 743628 - 743664 + F 72 -12.1 -3.10796 | opp_overlap 743624 743620 CACGGAAGGAACGGG CCTTGGGCCCGTTCCGG TTG CGGGTTCGGGTCCAGGG TGTTCCGTCGTGGCG TERM 829 743751 - 743771 + F 70 -3.9 -4.63172 | opp_overlap 743734, overlap 743738 743753 743755 GTACCACTGCGGCTT TGTACCCCG CAG CGGAGTGTA TTTTGTGGTTTCCTA TERM 830 743817 - 743832 + F 70 -10.4 -3.53012 | CAAAAGGGGAATTCG TCGCCC GTGA GGGCGA TTTCCAGACGAAGAC Rru_A0626 744088 - 745506 + | Fis family transcriptional regulator Rru_A0627 745590 - 746501 + | bacteriochlorophyll/chlorophyll a synthase TERM 831 746901 - 746948 + G 71 -14.8 -2.65264 | gap 1, overlap 746939 746940 CCTCGTTGTTGGCGA TGGTCGCCGGCGGCGT-TGACGA TCG TCGGCGCGCTCCGGCGGCGACCA TCGTCTGGATGATGA TERM 832 746939 - 746973 + G 70 -10.7 -3.57144 | overlap 746901 746940 746965 CGTCGGCGCGCTCCG GCGGCGACCATCGTC TGGAT GATGATGATCGCCGG TTTCGCCATCACCGC TERM 833 747621 - 747651 + G 72 -5.2 -4.36914 | TGGGGTTGTGGGGCG CCGCCCAGGCGATC GCC GGCGGTCTTGGCGG TTTTCTGGGAACGGC Rru_A0628 746498 - 747847 + | PUCC protein TERM 834 747917 - 747970 + G 78 -15.9 -3.14132 | gap 1, overlap 747920 TCGGTGGTGGTCCGG CCGGGGCGACGGCGGCGACCGATCTG GCG CGGGCCGGTCGGCG-TGTCGCCCTGC TTGATCCCGAAGGCC TERM 835 747920 - 747967 + G 87 -18.4 -2.77899 | gap 1, overlap 747917 GTGGTGGTCCGGCCG GGGCGACGGCGGCGACCGATCTG GCG CGGGCCGGTCGGCG-TGTCGCCC TGCTTGATCCCGAAG TERM 836 748122 - 748153 + G 72 -7.2 -4.19817 | gap 1, overlap 748093 CGATATGCCGATCAC CGGCGCGGTGGTGTC GAT GGT-CGATCGCGCCG TTTTCGATCCCTGGC Rru_A0629 747847 - 749088 + | geranylgeranyl reductase Rru_A0630 749111 - 749464 + | hypothetical protein TERM 837 749484 - 749468 - T 70 -4.3 -4.56597 | opp_overlap 749471 749474, overlap 749472 749477 CGCCTGCGCTAAAAA GAGAGGG AAG CCCCTTC TTGGGCGGGGCCGCC Rru_A0631 750855 - 749503 - | diguanylate cyclase TERM 838 750003 - 750031 + g 71 -2.9 -4.67982 | opp_overlap 749997, overlap 750004 750007 GCGGATCAAGCATGG CGATGCGCAACGC TTG GCGCTGGGCCTCC TTTTCTTCGGTGACC TERM 839 750963 - 750991 + H 74 -5.8 -4.43501 | opp_overlap 750950 AACGGCGGGCGGCGG CGGATCGCCCCT GCGGA AGGGACGCGCCG TTTTCTCCATCGCTT TERM 840 751329 - 751308 - g 95 -7.2 -5.28176 | opp_overlap 751308 GGTATGTAGAAAAAA GCCCTCCC TCCTCC GGGAGCGC TTGCCTTATCCCTTT TERM 841 751768 - 751788 + G 75 -4.6 -4.62069 | gap 1, overlap 751767 GAGATGGCCCGACTC GCCGTCAGC CAGG GCAG-CGGC TTTTTCGCCTACGAG Rru_A0632 751291 - 753501 + | chemotaxis sensory transducer TERM 842 753503 - 753546 + T 77 -11 -3.59979 | gap 3, overlap 753502 GCCGCAGCGCCTGAT C-CCG-GCCCGGGTCAG-CGC GACTG GCGGCCGGCCCGGGCGCGGAG TTTGAGATAAGCCAG Rru_A0633 754143 - 753514 - | DNA polymerase III subunit epsilon TERM 843 753851 - 753824 - G 70 -11.2 -3.54424 | overlap 753832 CGTGAGCCGGCGAAA CGCAAGAAGCGG GCGA CCGCCTCGCGCG GGGCCAGGCCGCGTT Rru_A0634 755969 - 754155 - | cyclic nucleotide-binding domain-containing protein TERM 844 754752 - 754762 + g 70 -8.2 -3.92659 | overlap 754752 GCCATAGACATCGTC GCGC AGG GCGC TTTCGCTTTTCGCCC TERM 845 755865 - 755831 - G 72 -5.4 -4.32034 | overlap 755833 TCATCACCACGAAAA GCGCATCCCCCGGCCG GTC CGGTCCGGTCAGGCGC TCGCCGGCGGTGAAA TERM 846 756045 - 756018 - R 100 -15.5 -4.63218 | CGCTCTTGAAGAAAA CCCCCCGGCGC GTCCTG GCGTCGGGGGG CTGAAACAGCAGGTA TERM 847 756066 - 756078 + r 93 -7.7 -5.00616 | ACAGCAGGTATCGTT GGATC GGG GATCC TTTTTTCGGGGGGCG TERM 848 756082 - 756133 + r 100 -18 -3.78775 | gap 1, overlap 756083 GATCGGGGATCCTTT TTTCGG-GGGGCGGCCGCCCTTC GGCTTGG GAAGGGCGGCCGCCGCGCCGCGG TTTAGTGGTCGGCCG TERM 849 756083 - 756132 + r 88 -19.3 -2.87051 | gap 1, overlap 756082 ATCGGGGATCCTTTT TTCGG-GGGGCGGCCGCCCTTC GGCTTGG GAAGGGCGGCCGCCGCGCCGCG GTTTAGTGGTCGGCC actP 757814 - 756135 - | acetate permease TERM 850 757788 - 757776 - G 85 -10.5 -4.17556 | overlap 757777 GAGAGGGGCAAGAAA GGCGG CGG CCGCC GCTCGGGAATGGCGC Rru_A0636 758126 - 757818 - | hypothetical protein TERM 851 758489 - 758466 - R 100 -11.7 -5.14563 | opp_overlap 758466 CCGCCCATGAAAAAA GGGACGCCC GGACTG GGGCATCCC TTTTTCATGACAAGA TERM 852 758466 - 758489 + r 85 -9.5 -4.72272 | opp_overlap 758466 CCGCCCATGAAAAAA GGGACGCCC GGACTG GGGCATCCC TTTTTCATGACAAGA TERM 853 758520 - 758533 + r 79 -9.5 -4.15565 | opp_overlap 758512 758513 758507 AACAAGACGCGGAAG GGGGG TGTT CCCCC TTTTCGGCTACTCGA Rru_A0637 758927 - 758541 - | hypothetical protein Rru_A0638 761065 - 759149 - | hypothetical protein Rru_A0639 761735 - 761139 - | regulatory protein RecX Rru_A0640 761873 - 762685 + | ABC-2 transporter component TERM 854 762907 - 762923 + G 74 -2.1 -4.82901 | TCGGTCTGCTTGGCG GCTGGTG GTA CACGCGC TTTTTGTCGCGGCGC TERM 855 763317 - 763367 + G 74 -8 -4.21462 | overlap 763319 CATGGCGGCCCTTTG CCGCGCCATCCCAGCCAGCTTTAC GAG GCGACGCTGGAGGGGCTGGTGCTG TTTTGCCTGCTCGGT TERM 856 763508 - 763536 + G 70 -11.1 -3.51924 | gap 1 CGCCCAGATCGGCTT TCTGGCCC-TGG GCGTGA CCATGGGCCAGA TTCTGTCGCTGCCGA Rru_A0641 762801 - 763625 + | prolipoprotein diacylglyceryl transferase TERM 857 764016 - 764004 - g 72 -4.8 -4.48987 | opp_overlap 764005, overlap 763998 CCGCCAGAAGCAAAA GCTG CGCGC CAGC GGCGTGACGGTTTTC TERM 858 764005 - 764026 + G 73 -6.5 -4.36914 | gap 1, opp_overlap 763998 764004 CGCCAGAAGCAAAAG CTG-CGCGCC AGC GGCGTGACGG TTTTCTGGCACGAGC TERM 859 764481 - 764512 + G 75 -15.8 -2.70932 | gap 1 GGCGATGGCCCGGGT GGCCG-CCGCCGCCG GGG CGGCGGTGGACGGCA TCGTTCAGCAAGGGC Rru_A0642 763615 - 764709 + | hypothetical protein TERM 860 764774 - 764784 + G 79 -2.4 -5.03314 | ACGCCCTGACCAATG TCCG GCA CGGC TTTTTTACCCGTAAC TERM 861 765410 - 765423 + G 73 -3.7 -4.64766 | overlap 765398 765409 CTTGCGACACCCTCC GCGAG GAGG CGCGC TTTTTCAGCTATCGC Rru_A0643 764737 - 765504 + | hypothetical protein Rru_A0644 765588 - 766616 + | hypothetical protein TERM 862 766686 - 766713 + F 91 -8.4 -4.7373 | opp_overlap 766675 AAGACTCCGGCCGTT CGCGCCGG GCCTCCTGACAG CCGGCGCG TTTTTCCTCCCGTCC Rru_A0645 766783 - 767715 + | ribose-phosphate pyrophosphokinase TERM 863 767719 - 767756 + F 100 -11.2 -6.28401 | gap 1, opp_overlap 767716, overlap 767723 767727 CTGTTCAACTAAGCC GACCGGCGGCGCCCGCC CCGCT GGCGGGCGCTTCCT-TC TTTTTTTGTTTTTTC TERM 864 767723 - 767753 + F 100 -17.5 -5.04908 | opp_overlap 767716, overlap 767719 767727 TCAACTAAGCCGACC GGCGGCGCCCGCC CCGCT GGCGGGCGCTTCC TTCTTTTTTTGTTTT TERM 865 767727 - 767749 + F 100 -17.7 -3.83403 | opp_overlap 767716, overlap 767723 767719 CTAAGCCGACCGGCG GCGCCCGCC CCGCT GGCGGGCGC TTCCTTCTTTTTTTG Rru_A0646 767803 - 769113 + | phosphoribosylamine--glycine ligase Rru_A0647 769110 - 770102 + | L-threonine ammonia-lyase Rru_A0648 770793 - 770155 - | hypothetical protein Rru_A0649 771291 - 770797 - | hypothetical protein Rru_A0650 771860 - 771381 - | tRNA-adenosine deaminase TERM 866 771986 - 772035 + H 100 -24.5 -3.09516 | opp_overlap 771968 772009 772010 GCGATGAGTCTATGA CGCCTAGATCCGTGTGCGTGA AACGTGCC TCGCGCCCACGGATCTAGGCG TTGGATAGTGAAGCG Rru_A0651 772117 - 772845 + | glutamine amidotransferase class-I TERM 867 773626 - 773610 - g 80 -9.3 -4.20918 | GCCAAGGGCAACAAA GGCGCCG CCC CGCCGCC CAAAGGAACGCTGAG Rru_A0652 772842 - 773723 + | pseudouridine synthase, Rsu TERM 868 773847 - 773857 + G 76 -8.2 -4.18018 | TTCACCGCTTCCAGG GCCG CGA CGGC TTTTCGCTGGAAGGC TERM 869 773936 - 773949 + G 73 -5.9 -4.36914 | overlap 773890 GCCCTGTCGCGCGGC GCCGC CCGG GTGGC TTTTCTCGAGCAGGC Rru_A0653 773723 - 774301 + | hypothetical protein Rru_A0654 775002 - 774349 - | multiple drug resistance protein MarC Rru_A0655 775728 - 775138 - | AsnC family transcriptional regulator Rru_A0656 775762 - 779472 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase Rru_A0657 780094 - 779483 - | lysine exporter protein LysE/YggA TERM 870 779656 - 779620 - G 89 -3.5 -5.26119 | gap 1, overlap 779624 779627 GCGCGAAAAAGAAAA GGAACG-ACGCCGCCA TGGCGC CGGCGGCGAACGAGCC CTGGCGATCGGGGAA TERM 871 779642 - 779624 - G 73 -9.5 -3.96867 | overlap 779620 779627 GAAAAAGAAAAGGAA CGACGCC GCCAT GGCGCCG GCGGCGAACGAGCCC Rru_A0659 783371 - 781071 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase Rru_A0658 780196 - 781128 + | chromosome replication initiation inhibitor protein TERM 872 781768 - 781742 - GT 82 -14.4 -3.13403 | overlap 781711 781740 CCGCCGGGATGAACA GCGACGGCGCGA TCA TCGTGCCATCGC CATCGCGCCAGCGGA Rru_A0660 785245 - 783368 - | periplasmic sensor Signal transduction histidine kinase Rru_A0661 786056 - 785418 - | Hly-III related proteins TERM 873 785581 - 785567 - G 74 -5.7 -4.44797 | CGATGAACACCAAAA CGATG GCTGG CATCG ACAGGGCGTCCGACA Rru_A0662 786358 - 786071 - | translation initiation factor 1 TERM 874 786479 - 786450 - R 73 -4.2 -4.62783 | gap 1 TACTTACCCGAAAAA TCCGCCGCCGTCC GCCGA GGAATGCG-CGGA TCGTCATTGGGCGTT TERM 875 786729 - 786706 - R 89 -7.4 -5.14965 | gap 1, overlap 786709 AGCCCGACGAAAAAA TAACCCGGACC CGG GGTCCGGGG-A GTCCAAACAGCCGGG TERM 876 786727 - 786709 - R 100 -16 -4.67552 | overlap 786706 CCGACGAAAAAATAA CCCGGACC CGG GGTCCGGG GAGTCCAAACAGCCG TERM 877 786760 - 786737 - R 73 -10.2 -3.59979 | overlap 786739 786740 TCCGGGGAGTCCAAA CAGCCGGGCC GAGA GGCCCGGATA GGGTTACGCCATCCG TERM 878 786757 - 786740 - R 72 -14.1 -2.62613 | overlap 786739 786737 GGGGAGTCCAAACAG CCGGGCC GAGA GGCCCGG ATAGGGTTACGCCAT Rru_A0663 786970 - 786764 - | cold-shock DNA-binding protein family protein TERM 879 787226 - 787215 - R 71 -7.2 -4.2349 | opp_overlap 787215 787214 GGGTCAGAGGGAAAA GCGC AGTT GCGC CTTTGTGCCTCGGGA Rru_A0664 788237 - 787203 - | Signal transduction histidine kinase Rru_A0665 788684 - 788238 - | response regulator receiver domain-containing protein Rru_A0666 790420 - 788681 - | multi-sensor Signal transduction histidine kinase TERM 880 789038 - 789062 + g 75 -2.7 -4.83615 | opp_overlap 789022 CTGGCTGAGCGCCAG CCGATCCGAGA CGA TTTCGGGCAGG TTTTTATCGACGCTG TERM 881 790445 - 790408 - G 75 -9.2 -4.07568 | gap 1, opp_overlap 790408, overlap 790409 TCCCGTCGCGCAAAA GCT-GCCGCGTCAAAGG GGCCT CCTTTGACGCGGTGAGG TCTAGTCGTGGTCGG Rru_A0667 791454 - 790447 - | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase TERM 882 790606 - 790578 - G 72 -14.5 -2.73364 | TGCCGATGTCAAGCA GCGGGTCGAGGCC GAG GGCCTTGACCAGC CGGCGGTGGCCGGGT TERM 883 791612 - 791632 + G 77 -10.4 -3.99374 | TGGACTGCCGACCGT GGTGCCGA TCTGC TCGGCGCC TTGTTCTTCCTGACC Rru_A0668 791573 - 792358 + | cobalamin-5'-phosphate synthase TERM 884 792585 - 792618 + G 95 -16.1 -4.15222 | gap 1, overlap 792580 CCTGGAACTGGCCGG GGCCCGC-CTTCTTCC CCC GGAAGAAGAGCCGGCC TTTCTTGAACAGGAT Rru_A0669 792355 - 792993 + | phosphoglycerate/bisphosphoglycerate mutase TERM 885 792990 - 793044 + F 79 -9.6 -4.23213 | gap 4 GAACGAGACCTTACC TTAGAGCGGC----GCGCGGAAAAGTGG GTG CCGGTTTTCCGCGCCATCGCCGCTCTAA TTTATTGAATCTAGA TERM 886 793069 - 793097 + F 93 -14.7 -3.83026 | opp_overlap 793066 TCTAGATCAAAGTTT CTGCGTTAAAGGG ATC CCGTTTAACGCAG TTTGATCTGAAGCGG TERM 887 793208 - 793192 - g 70 -10.8 -3.57144 | opp_overlap 793200 CCTTCGATCCCGAAA CGGCCC CCCCC GGGCCG CGGCTGACCCTGGTA Rru_A0670 793164 - 793736 + | adenosylcobinamide kinase Rru_A0671 793740 - 794792 + | cobalamin synthesis CobW protein TERM 888 794799 - 794856 + T 90 -19.2 -3.04398 | gap 3, overlap 794800 GGCCTGTAAGCGGCC GGGCCCGTCCCTCCGGGCTTGGTTCGGCC AGT GGTCG-GCCAAGCCCGG-GGG-CGGGAGC CTTTTACGAGACGGG TERM 889 794800 - 794857 + T 100 -20.5 -4.07568 | gap 1, overlap 794799 GCCTGTAAGCGGCCG GGCCCGTCCCTCCGGGCTTGGTTCGGCC AGT GGTCG-GCCAAGCCCGGGGGCGGGAGCC TTTTACGAGACGGGA Rru_A0672 795188 - 794877 - | hypothetical protein TERM 890 795145 - 795119 - G 72 -8.7 -4.14392 | gap 1 TTCCAAGGGCCAAAA CCGC-CTCGCCG GACG CGACGAGAACGG CCACGGTGAGCAGAA TERM 891 795371 - 795352 - H 77 -11.4 -3.57144 | overlap 795365 TCCGCGACCTGCAAA CGTCCGCC GCAA AGCGGACG TCCGAGTCCCCGCCA TERM 892 795729 - 795709 - g 72 -5.4 -4.36914 | overlap 795726 TCGCTGGCGACAAAA TCGCTCGA TGAAG CCAAGCGA CTGTCCCGCCCCCTT Rru_A0673 795541 - 795846 + | hypothetical protein Rru_A0674 795904 - 797064 + | Phage integrase TERM 893 797756 - 797775 + F 75 -2.1 -4.91109 | opp_overlap 797745, overlap 797758 AGGAGCCAAGGTCTT TAGCGTC ACTGAG GATGCTG TTTTTGTCGTGCGGG TERM 894 798679 - 798655 - g 70 -2.2 -4.59853 | gap 1, overlap 798657 798660 TCAATGCCGTAAAAA CATG-ATGGAG CCAT CTCCATGCACA AAGTTTCTTGTGGAT Rru_A0675 797870 - 798844 + | hypothetical protein TERM 895 798905 - 798925 + F 71 -5.4 -4.36914 | overlap 798896 AAGGGGGCGGGACAG TCGCTTGG CTTCA TCGAGCGA TTTTGTCGCCAGCGA TERM 896 800058 - 800034 - g 100 -19.3 -3.14931 | GCGACGCGGCATGAA GCGGGCCAAGG TGG CCCTGGCCCGC AAGTTGGCCACGGTG Rru_A0676 799105 - 800136 + | transposase IS116/IS110/IS902 Rru_A0677 800802 - 800257 - | hypothetical protein Rru_A0678 802190 - 800799 - | multi anti extrusion protein MatE Rru_A0679 803043 - 802420 - | TetR family transcriptional regulator Rru_A0680 803139 - 803831 + | hypothetical protein TERM 897 803882 - 803894 + F 74 -6.2 -4.54821 | overlap 803882 ACTATCGCGACTATC GGGG TCTGC CCCC TTTTATCATTAGACT TERM 898 803965 - 804009 + F 76 -13.3 -2.98823 | CCTTCGCCGTTCCTC TCCCCCCCCCCGGCCTTCGCC CTT GGCGAGGGGCGGGCTTGGGGC TATCTGTAGGGGAGG Rru_A0681 804033 - 804701 + | hypothetical protein Rru_A0682 804843 - 806222 + | NADPH-glutathione reductase TERM 899 806241 - 806294 + F 95 -7.4 -5.31275 | gap 3, opp_overlap 806236, overlap 806236 806242 806242 GCCCGTTAAAGCCCT TGG-GCCCTTT-CCGTTGGGCGGCCGG TGA CCAGC-GCCAAGCGGGGGAGGGCGCCG TTTTTTCTGGTCAGG TERM 900 806242 - 806293 + F 71 -8.7 -3.78042 | gap 3, opp_overlap 806236, overlap 806236 806242 806241 CCCGTTAAAGCCCTT GG-GCCCTTT-CCGTTGGGCGGCCGG TGA CCAGC-GCCAAGCGGGGGAGGGCGCC GTTTTTTCTGGTCAG Rru_A0683 806435 - 807820 + | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase TERM 901 808284 - 808294 + G 70 -2.4 -4.59773 | TGTGCATGGACCTGC CGCG CGT CGCC TTTTTGGCGATGGAC Rru_A0684 807839 - 809071 + | hypothetical protein TERM 902 809208 - 809225 + T 71 -8.4 -4.08394 | opp_overlap 809221 CCAAGGTCCCTCTGC GCGGCT AAATCC AGCCGC TTTTAAGCGCCGTCT Rru_A0685 809982 - 809212 - | hypothetical protein TERM 903 809577 - 809562 - G 72 -8.2 -4.0896 | AAAGCCCGGTCAAAA GGCCCG ATCC CAGGCC CCAGGTCAGCCGCCA TERM 904 809692 - 809661 - G 73 -13.7 -3.14795 | gap 1, opp_overlap 809661, overlap 809659 809649 AAAGCGCCAGCAACA GGCCGACCAGGGCG CTGGC CGCCCCG-CCGGCC TTATGGGCGGCCGTG Rru_A0686 810066 - 810950 + | LysR family transcriptional regulator nadE 811036 - 812712 + | NAD synthetase Rru_A0688 812746 - 814080 + | glutamyl-tRNA synthetase cysS 814140 - 815519 + | cysteinyl-tRNA synthetase TERM 905 818313 - 818325 + G 89 -10.5 -4.5442 | overlap 818283 GAGGAGGGCGGCAAG CGGCG GAT CGCCG TTTTGTCGTTCCGCA TERM 906 818395 - 818361 - g 71 -12.8 -3.34013 | GACGCCCTCAAGGAA GCCCAGCGCGAGGC GCTGCAG GCCTCGCGATTGGC CAGCGTCGGTCAGCT Rru_A0690 815613 - 819173 + | PAS/PAC sensor Signal transduction histidine kinase Rru_A0691 819287 - 820453 + | signal transduction protein Rru_A0692 820548 - 821720 + | response regulator receiver domain-containing protein Rru_A0693 822938 - 821736 - | Signal transduction histidine kinase Rru_A0694 823374 - 822931 - | response regulator TERM 907 823461 - 823448 - H 71 -6.7 -4.2828 | CGGGAGGTATCAAAA GAACC TCGT GGTTC TTCCAGGGTAGAAAG Rru_A0695 823804 - 825405 + | alpha-isopropylmalate/homocitrate synthase family transferase TERM 908 825429 - 825443 + G 81 -8.5 -4.56597 | opp_overlap 825420 CAGGAACGGATCGGA CCCGG ATGTC CCGGG TTTTTGGCGAGAACG TERM 909 825623 - 825633 + G 100 -8.2 -5.40072 | overlap 825592 825622 GCCGATGGCCTGCTG CGCG AGG CGCG TTTTTTTGAAACGAC Rru_A0696 825410 - 826249 + | RNA methyltransferase TrmH, group 1 TERM 910 826384 - 826440 + G 72 -11.4 -3.54741 | gap 2, overlap 826386 ACCACCGATCTTTTG CTGATCGGCAGCC-TGG-GGTCGCGGTC CCT GGCCGCCGCCGCCATGGCCGCCGGCCTG TTTCAGGCGCTGATG TERM 911 826386 - 826438 + G 71 -12.6 -3.35046 | gap 2, overlap 826384 CACCGATCTTTTGCT GATCGGCAGCC-TGG-GGTCGCGGTC CCT GGCCGCCGCCGCCATGGCCGCCGGCC TGTTTCAGGCGCTGA TERM 912 826654 - 826670 + G 71 -9.3 -3.76402 | overlap 826655 826662 CAGGAGCCCGCCCTG GCGGCCG AGG CGGCCGG TTTCATGCATACCCT Rru_A0697 826246 - 827652 + | multi anti extrusion protein MatE TERM 913 827705 - 827674 - T 72 -10.9 -3.28712 | opp_overlap 827676 827678, overlap 827688 GCTCCGGGGGTAGAA CAGAGAGCGTGAA ACAGGA TCCCCGCTCTCTG CTCTAAGATATTGAT Rru_A0698 828802 - 827771 - | lipolytic protein Rru_A0699 829515 - 829201 - | plasmid stabilization system protein Rru_A0700 829766 - 829524 - | transcription regulator rpsD 830110 - 830724 + | 30S ribosomal protein S4 TERM 914 830761 - 830786 + T 100 -18.3 -4.38774 | ACATGGTTTATGCGA CGGCTCCACCC TTTT GGGTGGGGCCG TTTTGCTATGATCTT Rru_A0702 831993 - 830881 - | molybdate ABC transporter ATP-binding protein TERM 915 831469 - 831454 - G 74 -7.5 -4.18494 | GATGGGGATGGAAAA CCGCC GGGGCA GGCGG GCGATGAAGGGCAGC Rru_A0703 832689 - 831997 - | molybdate ABC transporter permease TERM 916 832714 - 832750 + r 95 -18.8 -3.29511 | opp_overlap 832697 832715, overlap 832715 832742 CACCTCGTCGCGACA AGCCCAAGGCGGCGAA AGGCC TTCGCTGCCTTGGGCC TTGTAGCAGGATCAG TERM 917 832715 - 832749 + r 100 -22.3 -2.57564 | opp_overlap 832697 832715, overlap 832714 832742 ACCTCGTCGCGACAA GCCCAAGGCGGCGAA AGGCC TTCGCTGCCTTGGGC CTTGTAGCAGGATCA TERM 918 832749 - 832715 - R 100 -20.8 -3.28791 | opp_overlap 832715 832714 832742, overlap 832697 ACCTCGTCGCGACAA GCCCAAGGCGGCGAAA GGC CTTCGCTGCCTTGGGC CTTGTAGCAGGATCA Rru_A0704 833538 - 832762 - | molybdenum ABC transporter periplasmic-binding protein TERM 919 833318 - 833307 - G 75 -7.2 -4.34402 | CGGCCGACAGGAAAA CGCC GGCC GGCG CGCCTTGCTCGATCT TERM 920 833696 - 833674 - R 100 -10.5 -4.86731 | opp_overlap 833674 TCGGCTCAAACAAAA GGGCCGCCC GCCGG GGACGACCC TTTGATAGTCTTGGC TERM 921 833734 - 833755 + r 75 -2.2 -5.00616 | GACTGTTGTGATCAG GCGGCG GTGGTCGGGA TGCCGC TTTTTTCAAACAGGG Rru_A0705 834059 - 833730 - | glutaredoxin-like protein Rru_A0706 835077 - 834145 - | RarD protein TERM 922 835016 - 834967 - G 81 -8.3 -4.57073 | gap 1, overlap 834969 GACGGCTTTGAAAAA CAGCGGCGAGATGCCCCAGACGCC ATA GGCGCCAAGGGCGGC-CGCCACCC CCCGCGCCGAAGACC TERM 923 835014 - 834969 - G 84 -13.1 -3.90048 | gap 1, overlap 834967 CGGCTTTGAAAAACA GCGGCGAGATGCCCCAGACGCC ATA GGCGCCAAGGGCGGC-CGCCAC CCCCCGCGCCGAAGA TERM 924 835125 - 835099 - R 72 -11.5 -3.28712 | opp_overlap 835097 835115 GGCTGTGGGCCATAA GACCCCGGGCC GGGAT GTCCCGGGATC AGTCCTTGGGCTTGG Rru_A0707 835357 - 835124 - | BolA-like protein TERM 925 835317 - 835329 + g 72 -5.5 -4.34402 | overlap 835318 GCGTCGGGGAAAGCG TCCTG GAT CAGGG TTTTGATCTGACCGG TERM 926 835451 - 835393 - R 100 -2.4 -5.78622 | gap 2, opp_overlap 835444, overlap 835396 835398 835399 835401 GGAGGGGAAAAAAAA CAAGAGTAGAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTCT-CAAA-G AGGTCTGTCGGCTGG TERM 927 835449 - 835396 - R 100 -9.6 -4.96028 | gap 1, opp_overlap 835444, overlap 835393 835398 835399 835401 GGGGAAAAAAAACAA GAGTAGAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTCT-CAA AGAGGTCTGTCGGCT TERM 928 835447 - 835398 - R 100 -16.6 -4.07951 | gap 1, opp_overlap 835444, overlap 835396 835393 835399 835401 GGAAAAAAAACAAGA GTAGAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTCT-C AAAGAGGTCTGTCGG TERM 929 835447 - 835399 - R 87 -16.8 -3.0233 | opp_overlap 835444, overlap 835398 835396 835393 835401 GAAAAAAAACAAGAG TAGAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTCTC AAAGAGGTCTGTCGG TERM 930 835445 - 835401 - R 90 -19.4 -3.01402 | opp_overlap 835444, overlap 835398 835399 835396 835393 AAAAAAACAAGAGTA GAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTC TCAAAGAGGTCTGTC Rru_A0708 837698 - 835476 - | phosphoribosylformylglycinamidine synthase II TERM 931 835847 - 835883 + g 70 -10.6 -3.61398 | opp_overlap 835838 835837, overlap 835848 CGAAATCGCCAACCT TGCGCTCGGCCGCCAG ATCGA CGGGCGGCGGCGCGCC TTCTTCGCGGCCCAG Rru_A0709 838387 - 837695 - | phosphoribosylformylglycinamidine synthase I TERM 932 837756 - 837725 - G 75 -11.4 -3.67296 | opp_overlap 837754 837754 CACGATGGACTGAAA CAGCGCCCGGCCGC CGAT GCCGCCCAGCGCCG GTTCGACCAGGTTTT Rru_A0710 838677 - 838417 - | phosphoribosylformylglycinamidine synthetase PurS TERM 933 838751 - 838722 - R 100 -15.8 -5.055 | gap 1 GGAACCTGTAAAAAA CGAA-CGGGCGGC CTTAC GCCGCCCGCTTCG AGGTCACTGCATCAC Rru_A0711 839522 - 838755 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 934 839640 - 839589 - R 71 -6 -4.34402 | gap 4, opp_overlap 839595 CTGCTGACAGGAAAA CATCCGCCTCGGGG---TCTCC-GAG GTCT CTCTGGAGACCTCCCCCGGGCGGATG TGCGATCTTATAGCA Rru_A0712 840306 - 839713 - | XRE family transcriptional regulator Rru_A0713 841198 - 840422 - | hypothetical protein Rru_A0714 841394 - 841732 + | hypothetical protein Rru_A0715 842805 - 841765 - | Mg2+ transporter protein, CorA-like Rru_A0716 844156 - 842843 - | adenylosuccinate lyase TERM 935 843235 - 843260 + g 72 -6.8 -4.18018 | opp_overlap 843229 843228, overlap 843236 CCGAGGAATGCGAGA TGTCGCGCTC GTGCCA GAGGGCGACG TTTTCCATCGCCGGC TERM 936 844367 - 844309 - R 100 -26.8 -3.74693 | overlap 844310 GCGGAGGGGATCAAA GGGGAGCGGCGATGGCGCGGAAAACCAG TGC CCGCTTTTCCGCGCCATCGCCGCTCTAG AAAGAGCGCGCGGCC TERM 937 844366 - 844310 - R 100 -30.3 -2.84602 | overlap 844309 CGGAGGGGATCAAAG GGGAGCGGCGATGGCGCGGAAAACCAG TGC CCGCTTTTCCGCGCCATCGCCGCTCTA GAAAGAGCGCGCGGC Rru_A0717 845083 - 844364 - | phage repressor TERM 938 845166 - 845155 - H 89 -4.4 -5.1675 | GCACGGACGAAAAAA CACT TGAA AGTG AGCGTTTCATAGGAC TERM 939 845376 - 845396 + H 84 -6.1 -5.01042 | overlap 845377 GACGTCCGTGGTTCT CGTGAGTGC GGC GCATTCACC TTTTTACTTTGGATT TERM 940 847006 - 846984 - g 75 -6.8 -4.42238 | overlap 846953 846985 TGACGCCAAGCAAAA GGCCGAGGCG GAG CGCCGCGACG AAAGGGCCAAGAGGA Rru_A0718 845848 - 847857 + | chemotaxis sensory transducer TERM 941 848639 - 848654 + G 89 -2.5 -5.30616 | overlap 848630 TTCAGCCGGCGGGTT TTGGC GATCCG GCCGA TTTTTCTTTGCCTGC Rru_A0719 847991 - 848746 + | hypothetical protein Rru_A0720 849335 - 848841 - | MarR family transcriptional regulator Rru_A0721 850062 - 849388 - | anti-Sigm factor, ChrR Rru_A0722 850679 - 850059 - | RNA polymerase sigma factor RpoE TERM 942 850218 - 850186 - G 79 -3.4 -5.02476 | gap 1 AGATCTTCGAAAAAA GCCAGCCTGACCA CCTCGGCC TGATC-GGCGGGC AGGGATCGCAAAGCC TERM 943 852255 - 852227 - g 79 -8 -4.48987 | gap 1, overlap 852229 GGTGGAGAAGGAAAA CGCCCGCCTTGCC CCCT GGCC-GGCGGCCG GCGCCGGCTCGACCG Rru_A0723 850905 - 852290 + | amine oxidase Rru_A0724 852287 - 853108 + | hypothetical protein TERM 944 853139 - 853127 - g 84 -6.9 -4.72986 | CATGCTGACCAAAAA GACCG CTT CGGCC CTGGTTCTGGCCATG Rru_A0725 853113 - 854396 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 945 855310 - 855334 + G 83 -12.1 -4.0641 | TCGGGCGTGGTGCGT GGCGATGATCG TGG CGATCGCCGCC TTTGTCTGGGTGCCG TERM 946 855733 - 855722 - g 70 -3.6 -4.56597 | CTCGGCCGGCAAAAA GCGA TCCG CCGC CTGCTTGATCGCGCC Rru_A0726 854393 - 855799 + | major facilitator transporter Rru_A0727 855796 - 856410 + | hypothetical protein Rru_A0728 856843 - 856382 - | hypothetical protein TERM 947 856796 - 856778 - G 82 -6 -4.72497 | overlap 856788 856789 CATCGAGGAATAAAA GGCCAA ATAAGCG TTGGCC CCGGCTTCCAGGGCG Rru_A0729 857619 - 856840 - | Short-chain dehydrogenase/reductase SDR TERM 948 857442 - 857457 + g 75 -9 -4.09685 | TATCAAGGGCGAAGG GGTGGA TCGA TCCACC TTTTGAGCGGTCGGC Rru_A0730 858434 - 857616 - | hypothetical protein TERM 949 859044 - 859025 - g 74 -12.1 -3.57144 | TTGCCGACGCCGAAA GGGCGGC CGCTCC GCCGCCC GTGGCCGTCGCTCCC Rru_A0731 858601 - 859302 + | hypothetical protein Rru_A0732 860121 - 859390 - | DNA repair protein RadC Rru_A0733 860933 - 860118 - | methionine aminopeptidase, type I Rru_A0734 861503 - 861048 - | thioesterase superfamily protein Rru_A0735 862269 - 861532 - | sugar fermentation stimulation protein Rru_A0736 863219 - 862293 - | hypothetical protein Rru_A0737 863287 - 864027 + | phosphoribosyltransferase Rru_A0738 864115 - 864381 + | glutaredoxin GrxC Rru_A0739 864378 - 865217 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 950 865766 - 865812 + G 82 -11.5 -4.11484 | overlap 865767 TCGCCGTCGCCCTTC TGCCCTGGAGCCGCCGCGC-CGG CCA TTGAGCG-GGCGGCGCCACGGCG TTTTAGGCCGTTGGC Rru_A0740 865261 - 865794 + | hypothetical protein Rru_A0741 867311 - 865815 - | Signal transduction histidine kinase Rru_A0742 868317 - 867568 - | 3-demethylubiquinone-9 3-methyltransferase TERM 951 868344 - 868370 + H 74 -6.4 -4.3586 | TCTTTCATAAGCCGC GCGGGACCTC TGGACTT GCGGCCCCGC TTTTCGTATCCATAC Rru_A0743 868663 - 869883 + | aspartate kinase Rru_A0744 869898 - 870962 + | 2-nitropropane dioxygenase, NPD Rru_A0745 870988 - 873255 + | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 952 873296 - 873306 + F 73 -4.6 -4.68424 | GGAAACGAGCGTTGT TCCC AGA GGGG TTTTTCGCTAGGTTC TERM 953 874057 - 874033 - g 89 -14.9 -4.09685 | TCCGAGCGGTGAAAA CGCCCCCGCCG ATC CGGCGATGGCG GGATCGCCCGTCGAG TERM 954 874432 - 874377 - g 72 -8.8 -4.09685 | gap 1, overlap 874378 CCGCACCGCCGAAAA CGCCGGCCGAGCCCGC-CGTGAC CGTCGTTCAGC GCCCCGAGCCGGCGCGGCCGGCT CAGCCCACCCCCGAG Rru_A0746 873473 - 875005 + | hypothetical protein TERM 955 876255 - 876228 - g 82 -6.2 -4.82901 | gap 1 CCTGGTCGAGAAAAA GGCCGCCGAGATC GAA GCCCTCGA-GGCC GCCCGCAAGGCCAAG ispG 875140 - 876294 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 956 876332 - 876274 - f 72 -10.9 -3.37612 | gap 2, opp_overlap 876276 876288 876297, overlap 876275 876297 CGCAAGGCCAAGGAA CCGGCGACCGCCGCCGAAT-AG-GACCGG ACC CCGGCCGCTCATCCGGCCGGGGCCGCCTT TGCGTTCCTAGACAG TERM 957 876331 - 876275 - f 76 -14.4 -2.62246 | gap 2, opp_overlap 876276 876288 876297, overlap 876274 876297 GCAAGGCCAAGGAAC CGGCGACCGCCGCCGAAT-AG-GACCGG ACC CCGGCCGCTCATCCGGCCGGGGCCGCCT TTGCGTTCCTAGACA TERM 958 876276 - 876330 + F 80 -11.3 -3.78329 | gap 2, opp_overlap 876275 876274 876297, overlap 876288 876297 CAAGGCCAAGGAACC GGCGACCGCCGCCGAAT-AG-GACCGG ACC CCGGCCGCTCATCCGGCCGGGGCCGCC TTTGCGTTCCTAGAC TERM 959 876329 - 876297 - f 73 -14.1 -2.73875 | gap 1, opp_overlap 876276 876288 876297, overlap 876275 876274 CGCCGCCGAATAGGA CCGGACCCCGGCCG CTCATC CGGCCGGGG-CCGC CTTTGCGTTCCTAGA TERM 960 876297 - 876329 + F 75 -14.1 -2.86676 | gap 1, opp_overlap 876297 876275 876274, overlap 876276 876288 CGCCGCCGAATAGGA CCGGACCCCGGCCG CTCATC CGGCCGGGG-CCGC CTTTGCGTTCCTAGA hisS 876421 - 877668 + | histidyl-tRNA synthetase Rru_A0749 877689 - 879014 + | glutamyl-tRNA reductase Rru_A0750 879011 - 880075 + | peptide chain release factor 1 Rru_A0751 880072 - 881049 + | modification methylase HemK TERM 961 881570 - 881588 + F 85 -2.2 -5.40072 | opp_overlap 881560, overlap 881575 AACGAGTGCTCCAAG GGAGCGCT TGC GGCGGGCC TTTTTTTGGGCGCCA TERM 962 882470 - 882456 - g 72 -5.6 -4.30844 | overlap 882458 AGGCGACGAGGAAAA GCCCCG GGC CAAGGC CGAGCGGGCGCCGCG Rru_A0752 881635 - 882582 + | hypothetical protein TERM 963 882596 - 882608 + F 70 -4.7 -4.56775 | overlap 882593 GAGGCCTTTTCGGGC CAGCC AAA GGCCG TTTTTCCGGGGCCGT TERM 964 882612 - 882647 + F 100 -21.2 -4.2528 | AGCCAAAGGCCGTTT TTCCGGGGCCGTATCC GCAA GGGTGCGGCCCCGGGA TTTATTGGCTTCCCC TERM 965 883798 - 883814 + G 73 -6.5 -4.34402 | opp_overlap 883786, overlap 883784 883786 GGACGCGGCCCTGGC CCGGC GTTTCCA GCCGG TTTTCGTCTCCGAGC Rru_A0753 882809 - 885421 + | chaperone clpB TERM 966 885516 - 885553 + G 100 -19.2 -3.28712 | gap 1, opp_overlap 885537 CTTGTCGCAGACCTC GGTGGCG-GCGGCGGTG GATAA CGCCGCCGCCCGCTACC TTCTGCGCCGGCGCG Rru_A0754 885418 - 886488 + | hypothetical protein TERM 967 887316 - 887329 + G 75 -9.5 -4.07568 | opp_overlap 887315 GGTGGGCGAGATCAT CGGCG CCGT CGCCG TTTTCAAGCGCAACG Rru_A0755 886552 - 888255 + | chemotaxis sensory transducer TERM 968 888303 - 888331 + G 75 -9.5 -4.13014 | CGTGGAAATCGCCGT GATCGTTCTGCTG ATG CTGCTGAACGGTC TTTTCGCGATGTCGG TERM 969 888586 - 888615 + G 76 -2.1 -4.89339 | gap 1, overlap 888586 TGGGGGCGGTTTCTT GG-GGTCGGCGG GGTGCTG CTGCTGATCACC TTTTTGTCGATCGTT Rru_A0756 888280 - 889590 + | hypothetical protein TERM 970 889625 - 889637 + F 73 -10.5 -3.61398 | opp_overlap 889619, overlap 889606 889613 TCGGCCAAAGCGCGG CGGCG ATT CGCCG TTCTTCAGCACGACG Rru_A0757 889755 - 890321 + | isochorismatase hydrolase Rru_A0758 890318 - 891334 + | transcriptional regulator TERM 971 891570 - 891614 + F 71 -7.2 -4.14739 | gap 1, opp_overlap 891559 891566 891565, overlap 891559 891561 891560 891572 GAAAGGGAAAGGCAA TTCCCTTTCAAGGGGAATTGC GCTA GCG-TTCTCCTTGTAAGGGTG TTTTGGCGTGAATGA TERM 972 891572 - 891612 + F 77 -12 -3.67188 | gap 1, opp_overlap 891559 891566 891565, overlap 891559 891561 891560 891570 AAGGGAAAGGCAATT CCCTTTCAAGGGGAATTGC GCTA GCG-TTCTCCTTGTAAGGG TGTTTTGGCGTGAAT TERM 973 892414 - 892438 + G 71 -2.7 -4.67011 | overlap 892415 CCCTTGAGCCCTATC GCCGCCCGG GCGAAAG CTGGGTGGA TTTTTCGCTGCGCTT Rru_A0759 891666 - 892574 + | aldo/keto reductase TERM 974 893007 - 892972 - g 70 -11 -3.5393 | opp_overlap 892995 892998 ATGAGGCGGCCCAAA GTCCGCGCGGTCCC TTCGCGGT GAGCCCGCGCGGCC CCTTCGCCGTCAGCC TERM 975 893382 - 893437 + G 73 -15.8 -2.53263 | overlap 893358 893430 CCCTTCGCCGTCAGC CCGCGCGGTCCCTTCGCGGTGAGCCC GCGT GGTCCCTTCGCGGTGAGCCCGCGCGG TCCCTTCGCCGTGAG Rru_A0760 892620 - 893921 + | hypothetical protein TERM 976 894371 - 894396 + G 74 -12.5 -3.49135 | overlap 894368 CCGTGATCTGGAACG CTGGCGGCGTC AGGC GGTGCCGCCGG TTGATTGGTTCTATG TERM 977 894470 - 894481 + G 75 -7.2 -4.36914 | CAGCCGAACGCTCAA GCGC CCCC GCGC TTTTCTCAGCGAGGA TERM 978 894923 - 894949 + G 75 -11.4 -3.74693 | TGCCGAGGGGGGAAG CTCCGGCGGGCC GGT GGCCGGGCGGGG TTTGGTCGACTCACG Rru_A0761 893961 - 895472 + | radical SAM family protein TERM 979 895449 - 895477 + F 78 -13.7 -3.21695 | TGCCTTGGAACCCTG GCGCCCATGGCCG GTC CGGCTTAGGGCGC TTCCCTTCCTCGTCA Rru_A0762 895511 - 896965 + | Fe-S oxidoreductase Rru_A0763 896962 - 898026 + | radical SAM family protein Rru_A0764 898026 - 898340 + | HesB/YadR/YfhF TERM 980 898624 - 898609 - f 71 -7.6 -4.0641 | CGGCACTGACAGAAA TTTGGC CGGT GCCAAA CGGATCATTGGTTGG TERM 981 899732 - 899704 - g 71 -14.7 -2.6381 | AGAATTTTCATAGTA TTCCAAGCGGG TTGCGCG CCCGCTTGGAA GGAGTACGTCGGGGT TERM 982 901237 - 901252 + G 71 -3.2 -4.57516 | overlap 901239 CGGAGATGGCTGTTG GACGTG TCGA CACGTA TTTTCCTTTAGATAT TERM 983 901317 - 901301 - g 72 -4.3 -4.57073 | overlap 901311 GAGGGTGTTGAAAAA CGGCAAG CAA CTCGGCG AACTTGAACGCCGGG Rru_A0765 898719 - 902156 + | hypothetical protein Rru_A0766 904148 - 903144 - | adenosine deaminase Rru_A0767 905320 - 904247 - | ABC transporter component Rru_A0768 906993 - 905317 - | binding-protein dependent transport system inner membrane protein TERM 984 905560 - 905577 + g 75 -6.9 -4.36914 | opp_overlap 905550 905551 GAAAACCAGCAAGGC GGCGGTC AGCA GGCTGCC TTTTATCAGCGGCAG TERM 985 906788 - 906753 - G 70 -8.2 -4.02132 | gap 1, overlap 906754 CGGGAAAGCGATAAA GGGTGACCAGC-CAGGC GCA GCCGGTGCCGATCACCA GGGTGCCGAGGCCAA TERM 986 907101 - 907060 - R 70 -10.3 -3.53563 | gap 1, opp_overlap 907060 907061 907090, overlap 907087 907089 907090 AGACTCTTGGGGAAA GATGCGCGACGCAATCTCTT CAA AAAAGA-TGCGCGACGCATC TGGGGCCCTGATCCA TERM 987 907131 - 907087 - R 100 -17.1 -5.01732 | opp_overlap 907090, overlap 907060 907089 907090 AATCTCTTCAAAAAA GATGCGCGACGCATCTGGGGC CCT GATCCAGATGCGTCGCGCTTG GTCGAAGGCCCCGGG TERM 988 907129 - 907089 - R 100 -19.7 -4.13561 | opp_overlap 907090, overlap 907060 907087 907090 TCTCTTCAAAAAAGA TGCGCGACGCATCTGGGGC CCT GATCCAGATGCGTCGCGCT TGGTCGAAGGCCCCG TERM 989 907128 - 907090 - R 100 -23.2 -3.07655 | opp_overlap 907090, overlap 907060 907089 907087 CTCTTCAAAAAAGAT GCGCGACGCATCTGGGGC CCT GATCCAGATGCGTCGCGC TTGGTCGAAGGCCCC TERM 990 907090 - 907128 + r 100 -25.4 -3.14132 | opp_overlap 907060 907090 907089 907087 CTCTTCAAAAAAGAT GCGCGACGCATCTGGGGC CCT GATCCAGATGCGTCGCGC TTGGTCGAAGGCCCC Rru_A0769 908266 - 907223 - | extracellular solute-binding protein TERM 991 908416 - 908402 - R 81 -4.2 -5.00616 | TCGCCTTTGAAAAAA GCCG CCTTTTC CGGC CGCGGACAAAGAAAC TERM 992 908460 - 908431 - R 100 -20.7 -4.55295 | CCGCGGACAAAGAAA CCCCCCGGTCGGA GGGC TCCGGCCGGGGGG GGCAAGGCGGGGTGG TERM 993 908473 - 908517 + r 77 -11.4 -3.61328 | gap 2, overlap 908474 908514 908515 GGGGGCAAGGCGGGG TGGCGGGCGAGGGCGGCGAG CGCGAAA CCCGCC-CCC-CGTCCGCCG TTTCACGGTCTTGAT TERM 994 908539 - 908582 + r 85 -16.7 -2.90723 | gap 1, opp_overlap 908544 GGTCTTGATCGTCAG GCAAATCCCCG-GCGCGCTC CGCTT GGGCGCGCGCGGGGATCGGC TCTAATTGGCGCTGG TERM 995 908577 - 908544 - R 100 -16.8 -3.65351 | opp_overlap 908539 TGATCGTCAGGCAAA TCCCCG-GCGCGCTCC GCTT GG-GCGCGCGCGGGGA TCGGCTCTAATTGGC Rru_A0770 910185 - 908584 - | peptidase M23B TERM 996 910262 - 910274 + H 76 -6.9 -4.56597 | overlap 910237 910230 GGGCTTCCGACCGCA CCGGG TGT TCCGG TTTTTGAGGCCGGCG TERM 997 910570 - 910556 - H 100 -9.2 -5.1356 | overlap 910557 TGGGAGCAAGAAAAA CGCCGC AAT GCGGCA AAAGGTCGGGGTGTC TERM 998 910569 - 910557 - H 73 -10.5 -3.67413 | overlap 910556 GGGAGCAAGAAAAAC GCCGC AAT GCGGC AAAAGGTCGGGGTGT TERM 999 915307 - 915294 - H 78 -4.5 -4.7254 | ACTGTTTACTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 1000 916848 - 916802 - H 70 -12.5 -2.90075 | gap 1, opp_overlap 916814, overlap 916814 GCCCCCGCAACCAGA CAATACGAAAAAGGCGTTGGCT GAAA AGCTGACGCCTTTTTCGCAT-G ACTATAGACCGCCTG TERM 1001 916814 - 916837 + H 95 -11 -4.62783 | opp_overlap 916802 916814 AGACAATACGAAAAA GGCGTTGGCT GAAA AGCTGACGCC TTTTTCGCATGACTA TERM 1002 916837 - 916814 - H 88 -6.6 -4.9181 | opp_overlap 916814, overlap 916802 AGACAATACGAAAAA GGCGTTGGCT GAAA AGCTGACGCC TTTTTCGCATGACTA TERM 1003 919296 - 919307 + G 75 -4.4 -4.59773 | opp_overlap 919296 CGCCTACTGACCCAA GACA TATC TGTC TTTTTCGCCCTCGCA TERM 1004 919501 - 919483 - g 81 -3.8 -5.09225 | overlap 919484 ACCCCATTGAAAAAA TGGTCATA GGT TACGACCC GGCGGCGGACGGTGT Rru_A0771 917373 - 921860 + | hypothetical protein Rru_A0772 923418 - 922093 - | oxidoreductase/nitrogenase, component 1 Rru_A0773 924887 - 923424 - | nitrogenase Rru_A0774 926234 - 924918 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1005 927296 - 927316 + G 86 -7.5 -4.8622 | overlap 927291 927297 TCGCCACCCGCCGAC AGCGATCGG TTG TCGATCGCC TTTTTCCTTGGCGCC TERM 1006 927297 - 927315 + G 70 -11 -3.5125 | overlap 927291 927296 CGCCACCCGCCGACA GCGATCGG TTG TCGATCGC CTTTTTCCTTGGCGC Rru_A0775 926495 - 927526 + | 2OG-Fe(II) oxygenase Rru_A0776 927523 - 928698 + | hypothetical protein TERM 1007 929375 - 929399 + G 72 -11.4 -3.53012 | GCATCCGATCCCCGA GACGGCGATG ACCGC CATCGCCGCC TTTCCCACCCCCGAG TERM 1008 930112 - 930132 + G 70 -2.3 -4.66163 | overlap 930114 CCGATGCCGTCGATT CCCCCCGCG AGA CGAGGAGCG TTTTTCCATGAGGAT Rru_A0777 928695 - 930143 + | D-lactate dehydrogenase (cytochrome) Rru_A0778 930140 - 930946 + | lipoprotein YaeC TERM 1009 931269 - 931298 + G 100 -10 -4.76041 | gap 1, overlap 931272 TCTCCGGGCTTTTCG GCGCCTGACAGCG CCGGT CGCTGGCAGG-GC TTTTTCATCGATATC Rru_A0779 931092 - 932144 + | extracellular solute-binding protein TERM 1010 932549 - 932559 + G 84 -6.8 -4.77165 | CCGCAATACGCCGCT GCTG CTT CAGC TTTTCTTCTGGAGCG TERM 1011 932802 - 932785 - g 78 -9.8 -4.07687 | opp_overlap 932773 932754 AGCGGGCGGCCAAAA CCGCCC TTCTGG GGGCGG TGGCGGTCTTGCTGC Rru_A0780 932148 - 933311 + | binding-protein dependent transport system inner membrane protein Rru_A0781 933308 - 934411 + | amino acid ABC transporter permease Rru_A0782 934549 - 934887 + | hypothetical protein Rru_A0783 934895 - 935452 + | hypothetical protein TERM 1012 936240 - 936290 + G 72 -6.8 -4.20367 | gap 1, opp_overlap 936241, overlap 936241 936271 CGCTGATCGTTGATA ACACGGCCGCGCCGCTGATCG CCCGGCCCTT CGACCA-TGGCGCGGCGGTGG TTGTTTATTCGACGA Rru_A0784 935651 - 936979 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1013 937144 - 937181 + F 100 -10.6 -5.40474 | gap 1, opp_overlap 937143 937142 937146, overlap 937145 937146 CCGCCTCCGTAAACT CACTGCCCGATCCGGAC CCCAT GTC-GGATCGGGCAGCC TTTTTTTGGGGCGAT TERM 1014 937145 - 937180 + F 91 -14.1 -3.83561 | gap 1, opp_overlap 937143 937142 937146, overlap 937144 937146 CGCCTCCGTAAACTC ACTGCCCGATCCGGAC CCCAT GTC-GGATCGGGCAGC CTTTTTTTGGGGCGA TERM 1015 937179 - 937146 - f 83 -17.6 -2.64155 | gap 1, opp_overlap 937145 937144 937146, overlap 937143 937142 GCCTCCGTAAACTCA CTGCCCGATCCGGAC CCCAT GTC-GGATCGGGCAG CCTTTTTTTGGGGCG TERM 1016 937146 - 937179 + F 85 -17.6 -2.89655 | gap 1, opp_overlap 937146 937143 937142, overlap 937145 937144 GCCTCCGTAAACTCA CTGCCCGATCCGGAC CCCAT GTC-GGATCGGGCAG CCTTTTTTTGGGGCG Rru_A0785 937314 - 938249 + | LysR family transcriptional regulator TERM 1017 938260 - 938310 + T 90 -17.8 -3.14132 | gap 1, overlap 938254 938261 AATGATCCGCGCCGA GG-CCTAGACCGGCGTCCTTGAA ATCTGG TTCAGGCACGCCGGTCTAGGATC TTGATAGGGGAGCAA TERM 1018 938261 - 938308 + T 91 -19.3 -3.13403 | overlap 938254 938260 ATGATCCGCGCCGAG GCCTAGACCGGCGTCCTTGAA ATCTGG TTCAGGCACGCCGGTCTAGGA TCTTGATAGGGGAGC TERM 1019 938371 - 938409 + T 91 -19 -3.13403 | opp_overlap 938376, overlap 938376 GGGATTTGCCCTAAC GAAAAGCCCCCCGGGA GGATCGG TCCCGGGGGGCTTTTG TCTTGGTCGGGGAGG TERM 1020 938404 - 938376 - T 100 -18.9 -4.4078 | opp_overlap 938371 938376 TTGCCCTAACGAAAA GCCCCCCGGGA GGATCGG TCCCGGGGGGC TTTTGTCTTGGTCGG TERM 1021 938376 - 938404 + T 100 -18.9 -4.70583 | opp_overlap 938376, overlap 938371 TTGCCCTAACGAAAA GCCCCCCGGGA GGATCGG TCCCGGGGGGC TTTTGTCTTGGTCGG Rru_A0786 939598 - 938426 - | cystathionine gamma-lyase TERM 1022 938887 - 938897 + g 72 -8.2 -4.07568 | AGGGATCGAGCACGG CGCC GGT GGCG TTTTGCAGGAAGCCC Rru_A0787 940959 - 939595 - | cystathionine beta-synthase TERM 1023 940406 - 940393 - G 73 -3.7 -4.59109 | overlap 940394 940395 940403 GACACGGGCGAAAAA CCGCG ACAA CCCGG TCAGGGTGCCGCCCG TERM 1024 940721 - 940697 - G 74 -12.1 -3.58522 | ATGACCAGGGTCAAA TGGTAGCCGCG GCG CGCCGCCACCA GGGCCAGGGCAAGGC TERM 1025 941599 - 941619 + GH 74 -12.5 -3.14132 | CCTCGGTCCTGCTCT GCGACGAGG CGA CCTCGGCGC TTGATCCCGAAACCA Rru_A0788 941109 - 942164 + | ABC transporter component TERM 1026 942393 - 942438 + GF 74 -12.5 -3.16055 | gap 1, overlap 942393 CGTTGGCACCTCGAT CGGCACGGCGGCGGCCA-CAGT GCC GCTGGTCATCGCCGCCGTGCCC TTCGTCGCCCGTTTG Rru_A0789 942133 - 942810 + | binding-protein dependent transport system inner membrane protein TERM 1027 943570 - 943605 + G 70 -11.1 -3.6106 | gap 1 GCTCGATCCCCGAGA CCCGCGCCC-GCATCG AGGCG CTATGGGGGGCGCGGG TTTACGACTATTACG Rru_A0790 942837 - 944213 + | phenylacetate--CoA ligase Rru_A0791 944261 - 945049 + | NLPA lipoprotein TERM 1028 945073 - 945100 + T 100 -19.9 -4.05788 | opp_overlap 945073 CGGCCAAAAGGAAAA GGGCCCGGACG GGGTGG CGTCCGGGCCC TTTGATTTACCGGGA TERM 1029 945100 - 945073 - T 100 -19.9 -4.67038 | opp_overlap 945073 CGGCCAAAAGGAAAA GGGCCCGGACG GGGTGG CGTCCGGGCCC TTTGATTTACCGGGA TERM 1030 945337 - 945356 + T 73 -10.6 -3.63068 | GTGTGCGGCTCCTCA GCCGGAGC GGCC GCGCCGGC TTTCAGATGGTATAG Rru_A0792 946225 - 945359 - | Serine O-acetyltransferase TERM 1031 946422 - 946396 - R 79 -8.7 -4.19704 | gap 1, overlap 946397 TAAGGGTATTGAAAA TGGCGGCCTTCC GCCC GGATG-CCGCCA TTCCCCACAAAATAT Rru_A0793 947845 - 946445 - | nitrogenase TERM 1032 946978 - 946952 - G 73 -14.4 -3.14132 | TTCGGCGGTGATGAA GGCCTCGACCAC CGC GCTGTCGAGGCC GGCGAAAGCCGCCAC TERM 1033 947164 - 947126 - G 83 -13.1 -3.86916 | gap 1 GAGCACCAGATTAAA GCCGGCGC-GCGGGATGG CCTT CCATTCCGCCACCCCGGC CGATTGCGGGCCGAA Rru_A0794 949389 - 947854 - | nitrogenase Rru_A0795 950277 - 949402 - | nitrogenase iron protein TERM 1034 950240 - 950255 + g 74 -5.4 -4.4448 | overlap 950242 TTGCCGATGCCACCT TTGCCA TAGA TGGCGA TTTGTTTGGGACTTT Rru_A0796 951312 - 950317 - | radical SAM family protein TERM 1035 950543 - 950562 + g 74 -5.6 -4.56597 | gap 1, opp_overlap 950542 950543 950545, overlap 950545 ATGATGTTGAACAAC GAGGC-GCC GGC GGCCGCCAC TTTTTGGGCGACGGC TERM 1036 951290 - 951267 - G 77 -10.2 -3.93038 | gap 1, overlap 951268 CACCGCAAGATGAAA CTCCGCCGGCC GCA GGCTGGCGG-G AAGGATAAGCAGGAA TERM 1037 951375 - 951344 - R 83 -2.8 -5.19879 | opp_overlap 951347, overlap 951345 GCGGAAACAGAAAAA GCGGACTCACGGTC TTGT GAGGGTGTGTCCGT GATAGTCTGGCCTGG TERM 1038 951576 - 951566 - R 77 -3.2 -5.00616 | overlap 951573 951574 GCGCTTTGGAAAAAA GGAA AAA TCCC CGGGGCGGGGGGCGC TERM 1039 951587 - 951573 - R 93 -7 -5.25735 | overlap 951566 951574 GGAAAAAAGGAAAAA TCCCCG GGG CGGGGG GCGCGCCGGCTGGGC TERM 1040 951586 - 951574 - R 76 -10.5 -3.73001 | overlap 951566 951573 GAAAAAAGGAAAAAT CCCCG GGG CGGGG GGCGCGCCGGCTGGG Rru_A0797 952939 - 951704 - | major facilitator transporter TERM 1041 952712 - 952696 - G 78 -10.1 -4.11216 | CGCCGAGGGCGAAAA GCAGCGA TCG TCGCCGC CCCCATCCGCCGAGA Rru_A0798 953501 - 952944 - | 7-keto-8-aminopelargonate synthetase and related enzymes-like TERM 1042 953790 - 953803 + G 80 -9.5 -4.24342 | CGGTGGGTGTTGCTC GCGGC TTCG GCCGC TTTGTTGATGGCGCC TERM 1043 954543 - 954524 - g 75 -9.3 -4.07568 | GTTGCTGCTTGAAAA GGGCGAT GTCGAT ATCGCCC GCGACCTCACGCCCG TERM 1044 955318 - 955332 + G 71 -9.2 -3.86822 | opp_overlap 955318 TCGACTCGGGACCAA CCGGCG ATA CGCTGG TTTATGCCCGCATTC Rru_A0799 953763 - 955358 + | extracellular solute-binding protein TERM 1045 955389 - 955406 + G 80 -14.1 -3.64703 | TTCGATCAGGGGGGA GCCGCCG TCAC CGGCGGC TTTCCCTCGGCCCGG TERM 1046 955598 - 955629 + G 81 -12.2 -3.85698 | CCGCCAGCGGCTTGG CCTTGATCTGCCGC TCTG GCGGCAGTTCGCGG TTTATGCCGGCGAAA TERM 1047 955692 - 955709 + G 87 -6.9 -5.00616 | ACCGGGCAACCGGTG CTGGCCG ATAT CGCCCAG TTTTTTCCGGCGACG TERM 1048 955732 - 955746 + G 100 -10 -5.42259 | CGGCGACGTTTGAGC TGGCCA GTC TGGCCA TTTTTTTCGGGGTCG TERM 1049 956321 - 956364 + G 81 -3.7 -4.99043 | gap 1, overlap 956320 956321 CCAGTCGCTGTTCAA CGCCGATCTCACGGCGGTTC TGGGC GGGACGCTG-GTGGTTGGCG TTTTGTTTATCGGCC Rru_A0800 955362 - 956432 + | binding-protein dependent transport system inner membrane protein TERM 1050 956748 - 956794 + G 70 -3.7 -4.57073 | gap 2, overlap 956748 956750 956776 TCGTCACCATCGCCG CCC--TGACCGTGCTGCCGGTCA GCC TGATCATCGGCATGGTCGCTGGG TTTTTCGGCGGGATC Rru_A0801 956429 - 957319 + | binding-protein dependent transport system inner membrane protein TERM 1051 957585 - 957630 + G 74 -8.1 -4.28774 | opp_overlap 957579 CCAAGGCAAGGCGGG CGGGGCTTCTGGGCCGCCGTC TGTC GATGGTGCCGCAAGACCCCCG TTTTGGCTTGAATCC Rru_A0802 957326 - 958156 + | ABC transporter component Rru_A0803 958156 - 958914 + | ABC transporter component TERM 1052 959145 - 959171 + T 90 -4.5 -5.42514 | opp_overlap 959145 TAACTAGATATTAAG CCGTTGATT CCAGATCAA AATCAGCGG TTTTTTGCTTTGTGG Rru_A0804 960291 - 959326 - | LysR family transcriptional regulator Rru_A0805 961362 - 960586 - | conjugal transfer protein TERM 1053 961031 - 961009 - G 75 -3.3 -4.72986 | overlap 961010 961022 961023 GATGGTCAGGAAAAA GCGGCTTTC GAAAT GAATGCCGG CCTGCTCGAAGCCGT Rru_A0806 961635 - 961366 - | conjugal transfer protein Rru_A0807 961967 - 961635 - | conjugal transfer protein TrbC Rru_A0808 962944 - 961964 - | type II secretion system protein E TERM 1054 962339 - 962360 + g 80 -9.5 -4.18197 | gap 1 CGAGGCGATCCCTTC CTTGGTGCGC AAT GC-CACCAAG TTTTGGGTCCGACAT TERM 1055 963510 - 963491 - H 78 -4.3 -4.7373 | gap 1, overlap 963493 CCAGCTCACCAAAAA CG-TGCGA GCTGA TCGCAACG GCACTGCGACAGATC Rru_A0809 964687 - 966627 + | hypothetical protein Rru_A0810 966643 - 966933 + | hypothetical protein TERM 1056 966942 - 966956 + T 82 -12.8 -3.61178 | opp_overlap 966939, overlap 966946 TGTTTAACGGAACGG CCGGGC TGA GCCCGG TTTGGGCTGGCTAAA Rru_A0811 967687 - 967217 - | helix-turn-helix protein, CopG TERM 1057 968927 - 968944 + r 80 -4.1 -5.03715 | overlap 968931 968941 GCAGGATGGCGCCGA CCAGC AGCGCGTG GCTGG TTTTTTCCCAGTGGT TERM 1058 969115 - 969101 - R 74 -7 -4.4261 | opp_overlap 969113, overlap 969103 GGTCGAACAGCAAAA CCCGGC CGT GGCGGG CGCGGAAGCCGGCGG Rru_A0814 970436 - 969912 - | hypothetical protein Rru_A0815 970804 - 970433 - | hypothetical protein Rru_A0816 972742 - 970931 - | hypothetical protein TERM 1059 971109 - 971145 + g 95 -20.2 -2.78596 | opp_overlap 971098 AGCATCAGGCGCTGG CGGTAGAGGCCGGCTA CATGC TCGCCGGCCTCTGCCG TCTGGTAGGACAGTC TERM 1060 971928 - 971961 + g 70 -5.9 -4.19735 | gap 1 GCGGCGAAGCGGATC TCGACGTCGAG-GCGG GTC CAGCGCTCGGCGGTGA TTTCCTTTTCCAGGG TERM 1061 972815 - 972836 + H 70 -4.3 -4.53303 | gap 1, opp_overlap 972794, overlap 972793 972780 TCCTGTTAAGGACTT GCGGGTCATG TGG CGAG-CCCGC TTTTATCTCGCCGTC Rru_A0817 973250 - 973960 + | transposase Rru_A0818 974273 - 973938 - | hypothetical protein TERM 1062 974473 - 974438 - H 71 -6.1 -4.32048 | gap 1, overlap 974411 974408 GAAGAACATGGAAAA GGCCGCCAACCCGATG TCCGC CATCGTGT-AGCGCCC GTTACTGCCCGTCCG Rru_A0819 974936 - 976897 + | asparagine synthase Rru_A0820 977821 - 976916 - | Hpr(Ser) kinase/phosphatase TERM 1063 977242 - 977201 - G 73 -10.9 -3.74693 | gap 1, opp_overlap 977212 GGGGACGGGATCAAA GGCGGCCAGCATCGGCATAT GCC ATTTGCCGAT-CTTGCCTCC CACGGACTGCTGTCC Rru_A0821 978279 - 977821 - | hypothetical protein TERM 1064 978256 - 978241 - G 74 -10.4 -3.8211 | opp_overlap 978252 TTCCAGCCAGAACAA CCGGCT GCGC AGCCGG CGGAGGGAACCGGCC Rru_A0822 978554 - 978276 - | hypothetical protein Rru_A0823 978773 - 979678 + | cupin region TERM 1065 980512 - 980500 - g 71 -3.3 -4.58283 | opp_overlap 980503, overlap 980503 GAATGCCTGGAAAAA GGACC GGA AGCCC CTACTGGCTTTCTAC Rru_A0825 980281 - 980577 + | putative transposase Rru_A0826 980651 - 980821 + | hypothetical protein Rru_A0827 980826 - 981182 + | hypothetical protein TERM 1066 981403 - 981384 - f 77 -3.6 -4.98531 | TTGTTAAAGTAAAAA GAAAACTA CCAA TGGTTTTC TAGTCGTGTAAACGG TERM 1067 981572 - 981553 - g 81 -10.6 -4.07568 | opp_overlap 981553 981554 GTTTGGGGCGGAAAA GGCCGCCC GGCT GGCCGGCC TGCTTCATGATCTTG Rru_A0828 981431 - 983689 + | CRISPR-associated helicase Cas3 family protein protein Rru_A0829 983701 - 984366 + | CRISPR-associated RAMP Csd5d family protein TERM 1068 985040 - 985025 - g 71 -9 -3.7941 | GATCTCTTATAACAA GGAGTC CTTT GACTCC TATGGACACGAGCAG TERM 1069 985321 - 985346 + G 74 -2.4 -4.73682 | opp_overlap 985292 985291, overlap 985323 985323 CGCTAAGCGATGCCG CGCCACGCCT AGCCGA GGGCGTGAGG TTTTATGTTCTGGGG TERM 1070 986149 - 986133 - g 89 -3.5 -5.29846 | overlap 986134 986135 AAGGCCAAAGAAAAA GCCGCCG CGT CCGCCGC CGAAAACGCCTCCGC Rru_A0830 984363 - 986186 + | CRISPR-associated RAMP Csd1 family protein TERM 1071 986472 - 986459 - g 79 -3.7 -4.93365 | CCCGACAAGGAAAAA GCCGC CAAG GAGGC CAAGCTCAACCCGCA TERM 1072 986511 - 986532 + G 83 -2.9 -5.1287 | overlap 986506 986513 ACGAGGCCAAGGCCC TGCGCGC CTTCATGT GCGCGAA TTTTTTCGATGTGCG TERM 1073 986704 - 986694 - g 70 -8.2 -3.95369 | ACGAAAAGGAAAAGA CCGC CCA GCGG GAAGGGCAGGAGGGC Rru_A0831 986183 - 987136 + | CRISPR-associated Csd2 family protein TERM 1074 987528 - 987493 - g 85 -14 -4.12198 | opp_overlap 987498 987522, overlap 987483 TACAAGCGCGGAAAA GCCAAGCTTCACCCCG CCGA CGAGGTGCAGCTTTGC GCCCAGGGCTTGTGC TERM 1075 987796 - 987763 - g 74 -8.1 -4.25104 | gap 1, opp_overlap 987792 CTCTGCCGACCAAAA GCCACGGCCAA-ACCG GCG CGGTCCTGGCGGCAGC GAACCTTGGCGTCGC Rru_A0832 987157 - 987843 + | CRISPR-associated exonuclease Cas4 family protein TERM 1076 988138 - 988128 - g 72 -6.8 -4.1891 | opp_overlap 988131, overlap 988129 CGCGCCCAATACAAA GCCT CCG AGGC GCCCGAGGATATCGT TERM 1077 988334 - 988368 + G 71 -2.7 -4.59853 | overlap 988336 CGACCACCTGCGCGG CGCCGAAGGCGAGGC GGCCA GCCTTTATTTCGGGG TTTTTGGCCAGTTGA TERM 1078 988673 - 988689 + G 78 -10.1 -4.07568 | overlap 988652 988676 GGATTTCCAGCGCCT GGACGGC GGC GCCGTTC TTTTGACCGACGAGG TERM 1079 988676 - 988686 + G 76 -8.2 -4.17048 | overlap 988652 988673 TTTCCAGCGCCTGGA CGGC GGC GCCG TTCTTTTGACCGACG Rru_A0833 987840 - 988874 + | CRISPR-associated Cas1 family protein Rru_A0834 988890 - 989177 + | CRISPR-associated Cas2 family protein TERM 1080 989304 - 989281 - T 100 -9.6 -5.00467 | gap 1, overlap 989282 TCAATAACAACAAAA CGGGCGATGGT TTA ACC-TCGCCCA AAACACCCCCCTCCC TERM 1081 989303 - 989282 - T 77 -10.9 -3.58654 | gap 1, overlap 989281 CAATAACAACAAAAC GGGCGATGGT TTA ACC-TCGCCC AAAACACCCCCCTCC Rru_A0835 989657 - 989355 - | hypothetical protein TERM 1082 989866 - 989844 - R 76 -6.1 -4.59773 | overlap 989845 989846 GGCCAGCGCCAAAAA GTCGCCCCC TTCAC GGGGGCGTG GATCGAAACGGGAGA Rru_A0836 992809 - 992381 - | hypothetical protein Rru_A0837 996059 - 992802 - | leucine-rich repeat-containing protein TERM 1083 992884 - 992899 + g 77 -4 -4.75472 | gap 1, overlap 992887 AAAATCAGGATTTCG TCGGTGG TGG CCAC-GA TTTTCTTGATGTGCG TERM 1084 994051 - 994041 - G 70 -2.4 -4.58395 | overlap 994042 GTCATCGTCGAAAAA TCCG GCC CGGT GGAATAGGGTGCCGG TERM 1085 994934 - 994922 - G 70 -2.6 -4.59773 | overlap 994923 994924 CCGGACTGTCAAAAA GCCC ATCGG GGAC GGAGGTGATCCGACA Rru_A0838 998386 - 996371 - | TonB-dependent receptor TERM 1086 997087 - 997106 + g 76 -2.1 -4.91109 | gap 1, overlap 997085 997102 CGGCATGGGGGGTGA CGGC-CCA GAACG TGGCGTCG TTTTTATGATCGACG TERM 1087 998212 - 998242 + g 76 -6.1 -4.46233 | gap 1 TTGCGACACTGACGG CGCCGGCAACGTCG AATT CGGT-TTGGCGGCG TTTGTTTGCGGTTAC Rru_A0839 998548 - 999531 + | AraC family transcriptional regulator TERM 1088 999539 - 999519 - f 70 -12.5 -2.93623 | overlap 999514 999516 CTGGGCAAAACAGCA CGCCGACGC GTG ACGCCGGCG GAACCGGGGATGGCC Rru_A0840 999781 - 1001100 + | major facilitator transporter Rru_A0841 1001352 - 1002242 + | AraC family transcriptional regulator TERM 1089 1002248 - 1002296 + F 72 -11.7 -3.40299 | gap 3, opp_overlap 1002237, overlap 1002249 1002292 TATACGCTGACCTCG GTC-CGCGCCGC-CGGT-CGCGGG GCCG CCCGCGCACAGCGCGGCGCGCGGA TTATCGCTGTCGTCC TERM 1090 1002249 - 1002295 + F 76 -15.2 -2.63858 | gap 3, opp_overlap 1002237, overlap 1002248 1002292 ATACGCTGACCTCGG TC-CGCGCCGC-CGGT-CGCGGG GCCG CCCGCGCACAGCGCGGCGCGCGG ATTATCGCTGTCGTC Rru_A0842 1002441 - 1002698 + | hypothetical protein TERM 1091 1003163 - 1003175 + G 100 -6.9 -5.68438 | overlap 1003155 1003151 CTGGCTTGGCTGCAG CCGGC CTT GCTGG TTTTTTGTTTGGTGC Rru_A0843 1002695 - 1004428 + | ABC transporter component TERM 1092 1004513 - 1004480 - g 70 -10.1 -3.72695 | gap 1, opp_overlap 1004481 1004501, overlap 1004481 ACTGTCGTTATGAAA TCCGCCAAGCCG-CCC TGT GGGCCGGCGGGGCGGC GGTGTTGGACGCGGC TERM 1093 1004718 - 1004767 + G 85 -12.9 -4.07568 | gap 3 CTTGGTCAGCCATCT GCCCCGTCTGGCGCCGCCCGCCCT GCGCA AGGTC-G-CGGCGCCTGA-GGGGC TTTTGCGGGGGCCGG TERM 1094 1005135 - 1005149 + G 77 -5.6 -4.66163 | GCTGGCCCGAGGTTT GCCGGT GGG GCTGGC TTTTTCCCTCGCGGT TERM 1095 1005224 - 1005253 + G 73 -4.1 -4.63486 | overlap 1005225 TAACCCATCAGTCGC TCGACGGCGCCCG TCTG CTGGCCCTGTTGG TTTTATTGGCGCGCT Rru_A0844 1004425 - 1006134 + | ABC transporter component TERM 1096 1006154 - 1006139 - f 80 -3.2 -5.03314 | overlap 1006141 GCGAGGTGTAAAAAA CGTCTC AACC GACACG GCAGCGATAGTTGTA TERM 1097 1006580 - 1006567 - g 74 -2.3 -4.72497 | GATGGAGCAACAAAA CCTGA CGGA TCTGG ACGACGTCATGGAGA TERM 1098 1006941 - 1006924 - g 80 -9.1 -4.18197 | gap 1, opp_overlap 1006923 ACCGCTCATCGAAAA CGGC-GCG GTG CGCGGCCG GTTGGTCGGCGCCTA Rru_A0845 1006331 - 1008442 + | TonB-dependent siderophore receptor Rru_A0846 1008442 - 1008726 + | hypothetical protein TERM 1099 1009205 - 1009243 + G 70 -13.1 -3.06796 | overlap 1009189 GCTGGCGCCTGCCCT GGA-GCCCGCGACGGACCC ACG GGGCGCG-CGCGGGCGTCC TTGACTGGCATGGGG Rru_A0847 1008727 - 1010244 + | PepSY-associated TM helix TERM 1100 1011340 - 1011375 + G 86 -9.6 -4.63932 | gap 1, overlap 1011340 1011341 GGCCTCCTCCTCCCT G-GTCGCCGTGACCGCG CGG CTCGGCTACGGCGGCGC TTTTCTTGGGGGCTG Rru_A0848 1010237 - 1011478 + | major facilitator transporter TERM 1101 1011784 - 1011804 + G 90 -2.4 -5.40072 | overlap 1011785 CGGCGACTATGTGCT CGACGTCG TCCGC CGCCGTCA TTTTTTTGGACGAGC Rru_A0849 1011777 - 1012085 + | hypothetical protein TERM 1102 1012343 - 1012331 - T 100 -9.1 -5.32608 | AAAAAAGGCAAAAAA GGGGT CAG ACCCC AGATGGCCTCGAGCG TERM 1103 1013344 - 1013332 - T 70 -3.4 -4.6902 | CTATAAGTTTAAAAA CCAA TCAAT TTGG CTACATGAAGCGGCC Rru_A0850 1014220 - 1013873 - | hypothetical protein Rru_A0851 1015280 - 1014237 - | Hpr(Ser) kinase/phosphatase TERM 1104 1014917 - 1014888 - G 72 -13.5 -3.21099 | CCCGCCCAGCAGCAA GCCCAGGGTGACG GGGT CGGCACCCTCGGC GGCCTCGATCCCGAC Rru_A0852 1015898 - 1015611 - | hypothetical protein TERM 1105 1016232 - 1016242 + GH 79 -4.6 -4.84492 | overlap 1016229 1016228 GGGCATGTGGGTCGG TCCG AAC CGGG TTTTGTTCTCGTTCG TERM 1106 1016481 - 1016513 + GH 70 -9.8 -3.55563 | gap 1, opp_overlap 1016474 CGGGAAATCGACCCT GGCGGCCATGCTGCG GGAA CGCGG-GTGGCGGCC TTTGGCCGATGACGT TERM 1107 1016680 - 1016711 + GH 76 -10 -3.73953 | opp_overlap 1016680 1016679 AATCTGGTCGAAAAG GGCGGGGCGCCG TGGCAGGT CGGCCCCGCGCC TTTGGTCGCGGTGAT Rru_A0853 1015897 - 1016982 + | hypothetical protein Rru_A0854 1017082 - 1017981 + | sulfotransferase Rru_A0855 1019938 - 1018004 - | asparagine synthase TERM 1108 1019590 - 1019576 - G 100 -12.8 -4.3208 | overlap 1019578 GGCCAGAACCCAAAA GCCGGC GAG GCCGGC CAGGATCGCCGTGCC TERM 1109 1019943 - 1019931 - G 71 -3.3 -4.58663 | ACGACCCCGCAAAAA GCAGC CAT GCCAC CCTTTCCTCTCAAGG TERM 1110 1020962 - 1020984 + G 88 -7.7 -5.00884 | GGCGGGGGCCCTGAT CACCCTTCT GCGCG GGGAGGGTG TTTTTTAGCGCCGAT Rru_A0856 1020087 - 1020992 + | hypothetical protein Rru_A0857 1021921 - 1021052 - | sulfotransferase TERM 1111 1021187 - 1021173 - G 85 -5.6 -5.03314 | opp_overlap 1021183 1021186 CCGATGCGGAAAAAA CGCGAC AGG GTGGCG GGCCGCTCCACAAAG TERM 1112 1022077 - 1022091 + r 75 -2.8 -4.95167 | overlap 1022072 GGGTTCCCGAGCCAT CGCT GGGCGAG AGCG TTTTCTTGTTGGTTC Rru_A0858 1023947 - 1022400 - | EmrB/QacA family drug resistance transporter TERM 1113 1022829 - 1022814 - G 79 -4.6 -4.72986 | overlap 1022816 CAGGGCGATGAAAAA CGTCGC CATG GCGAAG CCTTGCAGCAAATGG Rru_A0859 1025182 - 1023974 - | secretion protein HlyD Rru_A0860 1026727 - 1025255 - | RND efflux system, outer membrane lipoprotein, NodT TERM 1114 1025831 - 1025786 - G 72 -5.1 -4.39426 | overlap 1025787 GACATTGGGATAAAA TCGGGCCTTGGCGGCGTCG ATGCTCCG CGTCGCCGCCTCGATCCGC CAGCGATGGGCGACG Rru_A0861 1027267 - 1026794 - | MarR family transcriptional regulator Rru_A0862 1027507 - 1028394 + | AraC family transcriptional regulator Rru_A0863 1030113 - 1028416 - | ABC transporter, transmembrane region TERM 1115 1029123 - 1029155 + g 77 -15.6 -3.05384 | gap 1 AGCTCACGTTCTGGA AGGCGAC-CTCGCCG GCGG CGGCGAGCGTCGCCG TTCCCTCGGGCAAAA TERM 1116 1029596 - 1029586 - G 74 -2.4 -4.72272 | overlap 1029587 CCTGGCCAGGAAAAA CCCC CTG GCGG CATTCAGGCCGATGA TERM 1117 1030059 - 1030078 + g 70 -10.6 -3.53224 | opp_overlap 1030047 GCACCCGCAAGCCCA GGCCGCGC CACA GCGCGCCC TTTGGCCGGCCGCTG Rru_A0864 1031929 - 1030118 - | ABC transporter, transmembrane region TERM 1118 1030928 - 1030895 - G 78 -13.7 -3.53224 | GATGGCGTCGGCAAA GGCGCTATCGGCCGC CGCC GCGGGCGCTGGCGCC ACGGCCGCCGGCGCG TERM 1119 1032243 - 1032196 - H 95 -19.3 -3.28712 | opp_overlap 1032191 1032236, overlap 1032197 GCTTGTCTGTCAGAA CCTTAGGTCAGTGAGCGGGGA GCGGAG TCCCCGCTCACCGCCCTAAAA GATCCCGTTTGGGGT TERM 1120 1032242 - 1032197 - H 95 -20.6 -2.57132 | opp_overlap 1032191 1032236, overlap 1032196 CTTGTCTGTCAGAAC CTTAGGTCAGTGAGCGGGGA GCGGAG TCCCCGCTCACCGCCCTAAA AGATCCCGTTTGGGG Rru_A0865 1032303 - 1034465 + | TonB-dependent receptor Rru_A0866 1034468 - 1035709 + | major facilitator transporter Rru_A0867 1037231 - 1035756 - | peptidase C14, caspase catalytic subunit p20 Rru_A0868 1040548 - 1037228 - | peptidase C14, caspase catalytic subunit p20 TERM 1121 1039412 - 1039370 - G 75 -4.7 -4.59773 | gap 1, overlap 1039371 1039372 1039392 1039393 GGTCACGGCGAAAAA GCCGGAGG-CGACATCGCGG AAAT CGGCGATGCCGGCCTCGTGG TGGATGGCCGGCAGC Rru_A0869 1041401 - 1040580 - | hypothetical protein TERM 1122 1040838 - 1040861 + g 73 -3.8 -4.62069 | CTGAACGCCTTTATT GATGTCCTTG GCGA CGGAGACATC TTTTTCCGCTCGGCG TERM 1123 1041370 - 1041384 + g 74 -2.1 -4.72986 | GAGGCGCAGGAGAGG GCTTT GAGTG AAGGC TTTTTAATAAAGATC Rru_A0870 1042230 - 1041568 - | OmpA/MotB TERM 1124 1041634 - 1041645 + g 72 -7.2 -4.21676 | opp_overlap 1041633 CGAGGGCCGCAAGAG GGCG CTTT CGCC TTTTCCCTCGGTTCT TERM 1125 1042015 - 1041994 - G 90 -18.7 -3.01712 | opp_overlap 1041992 1041991 TTTGCTTGTCGAAGA CGCCGCCGC CGGG GCGGCGGCG GGTGCCGTTTGCGGG Rru_A0871 1042922 - 1042302 - | hypothetical protein TERM 1126 1042671 - 1042637 - G 79 -13.6 -3.64703 | CGCCTTGGACGGAAA CATCGATGTCGGCGTT CCC ATCGGCGACACCGATG GAGGTGGTCGCCCGA Rru_A0872 1043574 - 1042948 - | hypothetical protein TERM 1127 1043358 - 1043386 + g 81 -15.2 -3.5394 | overlap 1043382 GATCGAGGGGCCCCA GCGGAGGGGGGC TTGCC GCCTCCCCCCGC TTTGAAAGCCGGTTT Rru_A0873 1045147 - 1043594 - | hypothetical protein TERM 1128 1043741 - 1043768 + g 81 -5.4 -4.72029 | opp_overlap 1043742, overlap 1043742 CTTTTTGTTTTGATA AGGCGACTGCGT GGCG ACGCAGGCGACG TTTTCTTCCGTTCCC TERM 1129 1044809 - 1044799 - G 86 -8.2 -4.80455 | opp_overlap 1044799 1044798 GATTGAAATAGAAAA CGGC GTC GCCG CTTCTTTCCACATCG Rru_A0874 1045488 - 1045186 - | hypothetical protein Rru_A0875 1045894 - 1045571 - | hypothetical protein TERM 1130 1045952 - 1045916 - R 74 -11.6 -3.53012 | gap 2, opp_overlap 1045918 1045920, overlap 1045917 CCCTTTTTTCTGAAA GCGGATCCCGGACGGCGA CGG TCGCCCCCCGGGA-C-GC TTTTTATTGGCAGGT TERM 1131 1045918 - 1045952 + r 100 -9.8 -5.06816 | opp_overlap 1045916 1045917, overlap 1045920 CTTTTTTCTGAAAGC GGATCCCGGACGGCGA CGG TCGCCCCCCGGGACGC TTTTTATTGGCAGGT Rru_A0876 1046273 - 1045956 - | hypothetical protein TERM 1132 1046033 - 1046050 + g 75 -6.9 -4.42653 | CGACGGCGGCGTTCA CCGCCGT TCCC ACGTCGG TTTTCTGGGTCAGGT TERM 1133 1046372 - 1046403 + r 93 -8.1 -4.99043 | overlap 1046375 1046388 TAGCGAGCGATGGCT GATCATGGGTCTT TTTCAT AAGACCTATGTTC TTTTGTTTCTACGGC TERM 1134 1046375 - 1046400 + r 81 -8.4 -4.58946 | overlap 1046372 1046388 CGAGCGATGGCTGAT CATGGGTCTT TTTCAT AAGACCTATG TTCTTTTGTTTCTAC TERM 1135 1046532 - 1046562 + r 73 -4.8 -4.63527 | opp_overlap 1046528, overlap 1046529 1046530 TATGGATCACACCAC CCATGGGGAT AATTTTATGAG ATCCCTATGG TTTTTAGGGTGCTCC Rru_A0877 1047863 - 1046826 - | hypothetical protein TERM 1136 1047633 - 1047614 - G 72 -5.6 -4.37092 | overlap 1047615 1047617 1047620 AGCCGTGGGACAAAA CGACAAGC GGGT GCGCGTCG CCGACCGGCTTGGCA TERM 1137 1049299 - 1049336 + G 80 -14.1 -3.69354 | gap 1, overlap 1049302 GAAAGCGCGTTCCCC CAGGCCGGCCAGGGGTCG CTG CGGGCGCTGGCCGG-CTG TTTCGGGTTCTCCGG TERM 1138 1049302 - 1049334 + G 87 -16.9 -3.4268 | overlap 1049299 AGCGCGTTCCCCCAG GCCGGCCAGGGGTCG CTG CGGGCGCTGGCCGGC TGTTTCGGGTTCTCC Rru_A0878 1048054 - 1049676 + | ABC transporter component TERM 1139 1050138 - 1050156 + G 82 -6.6 -4.72272 | opp_overlap 1050134 CCTGCAAGTCACCTC CTCTGCGG TGG TCGCCGAG TTTTTCATCCCCGCC Rru_A0879 1049803 - 1050846 + | AraC family transcriptional regulator Rru_A0880 1051001 - 1053043 + | TonB-dependent receptor TERM 1140 1053185 - 1053204 + G 74 -7.8 -4.20367 | overlap 1053171 1053172 TGGCCAGCCTGGGGG CGGCGC TTGGTCTT GCGCCG TTCTTTCTTGCGGCC TERM 1141 1053300 - 1053348 + G 73 -9.7 -4.01135 | CGCCTCTCTCGTGAC GGCGCC-TT-TGGCCCATGGGCTCG CCA CG-GCCC-TGGCCCATGATGGCGCC TTTGATGTTCTTGCC TERM 1142 1054329 - 1054350 + G 89 -3 -5.27335 | gap 2, overlap 1054329 1054336 GCTTTCCCGCCATGT CG-C-CCTGG TCTC CCAGGAGGCG TTTTTGTTTGACGAC TERM 1143 1054415 - 1054382 - g 70 -13.1 -3.01712 | gap 1, overlap 1054367 CGGTGGCGGCCAATA TCCGCGCCGGCCGACC CGA GG-CGACCGACGAGGA GGTGCGCGCCGCCGC TERM 1144 1054506 - 1054487 - g 71 -9.2 -3.82097 | CGGAAAGCTATGAAA CCCGCCTT GGCG AGGGCGGG CAGCGGTTGAGCGGC TERM 1145 1054707 - 1054717 + G 72 -5.4 -4.4078 | CTCTACCCGACAGGC CGAT CAC ATCG TTTTCGTTCAGGCCG Rru_A0881 1053088 - 1054857 + | ABC transporter component TERM 1146 1055288 - 1055313 + G 70 -10.3 -3.64703 | TCCCGGCCTTATTCT GCCCCGCTTGG TGTC CCTGGTGGGGC TTTCCCTCGCCGCGG TERM 1147 1055696 - 1055712 + G 89 -3 -5.3167 | gap 1, overlap 1055688 1055696 GTCCCTGGGATGGAT GG-ATCC TTTT GGATTCC TTTTCTTTGTTTTTG TERM 1148 1056109 - 1056129 + G 70 -6.1 -4.24602 | overlap 1056110 TTTCCAACCTTGTCG GCATCGTCT CGC AGACGGTGG TTCTTTTCAGTCTGT TERM 1149 1056183 - 1056230 + G 72 -13.2 -3.14344 | gap 1, opp_overlap 1056184 GTGCGGCCGCAGGCA ACCGACGCGG-AGGTGGAGCGGG CGG CCCGCGCCGCCCGCTGCGACGGG TTCATCAAGGCCATG TERM 1150 1056229 - 1056184 - g 74 -14.5 -3.05384 | gap 1, opp_overlap 1056183 TGCGGCCGCAGGCAA CCGACGC-GGAGGTGGAGCGGG CGG CCCGCGCCGCCCGCTGCGACGG GTTCATCAAGGCCAT Rru_A0882 1054854 - 1056632 + | ABC transporter, transmembrane region TERM 1151 1057125 - 1057145 + G 85 -10.4 -4.27316 | gap 1, overlap 1057144 GGCTTTGTCCGAACT GCCCGAGCG CAAT CGC-CGGGC TTTTGAGTTGCAGCG Rru_A0883 1056769 - 1057284 + | sigma-24 (FecI) Rru_A0884 1057291 - 1058247 + | putative FecR TERM 1152 1058638 - 1058598 - g 82 -11.8 -4.07687 | gap 1, opp_overlap 1058598 1058599, overlap 1058599 ATTCTGGCTGGAAAA TCCACCCCGGGTGTCA-GC GGTC GCATGACGCCCGAGGCGGC TTTGGCCCAACTCTT TERM 1153 1058637 - 1058599 - g 77 -15.3 -3.04398 | gap 1, opp_overlap 1058598 1058599, overlap 1058598 TTCTGGCTGGAAAAT CCACCCCGGGTGTCA-GC GGTC GCATGACGCCCGAGGCGG CTTTGGCCCAACTCT Rru_A0885 1058367 - 1060751 + | TonB-dependent siderophore receptor TERM 1154 1060808 - 1060761 - T 100 -16.1 -4.14392 | TTCTAAGCGCGAAAA GCCCAAGCCCGGCGCCGAGGC CTTGCC GCCTCGGAGCCGGGGGAGGAC GCTTAAACGTGATGG Rru_A0886 1063969 - 1060811 - | hydrophobe/amphiphile efflux-1 HAE1 Rru_A0887 1065204 - 1064008 - | secretion protein HlyD TERM 1155 1065323 - 1065307 - R 100 -7.9 -5.44119 | overlap 1065317 TTGAGGTCAAAAAAA GCCGCCA AAA CGGCGAC AACGACGGTGGTCCC Rru_A0888 1066032 - 1065421 - | TetR family transcriptional regulator TERM 1156 1066128 - 1066114 - H 72 -12.8 -3.02511 | opp_overlap 1066116, overlap 1066094 GGGAGGCCGGGAAGA GCGGCG CCT CGCCGC GCTGGCTACCCACGA TERM 1157 1066251 - 1066261 + G 79 -8.2 -4.30576 | CACCGCCGCCCTCGC CGCC CTA GGCG TTTTCCTGCTGGCCG Rru_A0889 1066225 - 1066587 + | hypothetical protein TERM 1158 1066640 - 1066623 - T 100 -12.7 -4.72272 | opp_overlap 1066623 GGCTGCCATGAAAAA GGCCACC CGAA GGTGGCC TTTTCCGTGCGATCA TERM 1159 1066623 - 1066640 + T 95 -12.7 -4.1899 | opp_overlap 1066623 GGCTGCCATGAAAAA GGCCACC CGAA GGTGGCC TTTTCCGTGCGATCA TERM 1160 1066659 - 1066683 + T 77 -3.4 -5.00196 | opp_overlap 1066658 TCCGTGCGATCACAG GGCCGAACGG GTCCG TCACTCGGCC TTTTCTTCTTTGGCC Rru_A0890 1067690 - 1066674 - | integral membrane protein TerC TERM 1161 1067812 - 1067757 - R 100 -22.6 -3.6106 | overlap 1067749 1067758 CGCAATACGCCCAAA CGG-GCGGCTCGCCGGTCGGCACGCC ACGGGG GGCG-GCCGGCCGGCGAGCCGGTCCA GGTCAATCGTTAAAG TERM 1162 1067810 - 1067758 - R 100 -24.1 -2.76315 | gap 1, overlap 1067749 1067757 GCAATACGCCCAAAC GGGCGGCTCGCCGGTCGGCACGCC ACGGGG GGCG-GCCGGCCGGCGAGCCGGTC CAGGTCAATCGTTAA Rru_A0891 1068282 - 1067830 - | tellurite resistance TerB Rru_A0892 1069571 - 1068315 - | stress protein Rru_A0893 1070207 - 1069623 - | stress protein TERM 1163 1070075 - 1070042 - G 76 -8.2 -4.21812 | gap 2, overlap 1070046 CGTCATCGAAAACAA GGCAG-GAGG-CATCG AGAT CGATGTCCCCACCGCC GCCGCCAAACAGGCC Rru_A0894 1070882 - 1070304 - | stress protein TERM 1164 1071147 - 1071137 - R 78 -2.4 -5.1361 | ACAAACGCTAAAAAA GCCG GGA CTGC CATCAAAGATCCTGC Rru_A0895 1071530 - 1071198 - | putative transcriptional regulator TERM 1165 1071827 - 1071846 + G 78 -6.3 -4.58773 | overlap 1071826 CTGACGATTATTCGC GCCGCCG ACCATG CGGGGGC TTTTGGTTTGCTGGC TERM 1166 1072441 - 1072460 + G 70 -10.6 -3.55444 | TGTTCTGGCCTGTCG CGGCACGC TGGT GCGCGCCG TTTCGCGGGTGAAGG Rru_A0896 1071767 - 1072774 + | hypothetical protein Rru_A0897 1072865 - 1073089 + | hypothetical protein Rru_A0898 1074049 - 1073120 - | ATP/GTP-binding protein Rru_A0899 1075140 - 1074046 - | hypothetical protein Rru_A0900 1075901 - 1075137 - | hypothetical protein TERM 1167 1075204 - 1075192 - G 79 -3.3 -5.00616 | GTCGTGTTCAAAAAA CCCAG GAT CTGCG AGCGCGACGGGGTGA TERM 1168 1075362 - 1075320 - G 82 -6 -4.72272 | overlap 1075347 1075358 GGTTTCCAGGAAAAA GGCGACGGCGGCGCGCTTGC CCA GGAAGGGCGGCAACAGCGCC ATGTTGGCGCCGTTG Rru_A0901 1077058 - 1075898 - | hypothetical protein TERM 1169 1075961 - 1075933 - G 100 -10.1 -5.47218 | opp_overlap 1075951 TGGCATTGAAAAAAA CCGGTTCGGCGCC CAG GGCGGCGATCAGG GCCGTTTGGGCGGTC TERM 1170 1076523 - 1076560 + g 73 -14.1 -3.21099 | ATCGCGGCGCGATTG GCTTCGACTAGGGCGAC GAAG GTCGCACCGGTCGAGGC TTCGTCATCGACGAG TERM 1171 1077388 - 1077432 + H 72 -12.8 -3.09933 | gap 2, opp_overlap 1077400 CGCCGCCGGGGTGAC GCCCGCCAG--AAATCCCCCGG TTC CCGGGGGATGGGGCCGGCGGGC TTGGGTGCGTTGCGA TERM 1172 1077418 - 1077400 - H 95 -16 -3.86015 | opp_overlap 1077388 GACGCCCGCCAGAAA TCCCCCGG TTC CCGGGGGA TGGGGCCGGCGGGCT TERM 1173 1078109 - 1078125 + G 71 -15.1 -2.57881 | overlap 1078108 1078098 CGACGTCGCCCGCTT GGCCGGG ACA CCCGGCC CTTCTGCGCGACTTC Rru_A0902 1077598 - 1078173 + | peptidase C56, PfpI TERM 1174 1080697 - 1080676 - g 70 -5.9 -4.19238 | gap 1, overlap 1080682 GCTTGAACCGGAAAA GCATAACGAC CTG GTCGTT-CGC GTCGCCGGCTACAGC Rru_A0903 1078241 - 1080781 + | pyruvate formate-lyase TERM 1175 1080832 - 1080789 - f 73 -10.8 -3.57144 | opp_overlap 1080782, overlap 1080790 CCCTCTAGCGGCAAA CCGGGTTTCGTCCCCCCGGA CCAG TCCGGGGGGACGGCCTCCAA GAAGCGGGGTTTTTC Rru_A0904 1080895 - 1082055 + | Iron-containing alcohol dehydrogenase Rru_A0905 1082129 - 1082425 + | microcompartments protein Rru_A0906 1082456 - 1083298 + | polyhedral shell protein, EutL/PduB type TERM 1176 1083832 - 1083789 - g 74 -10.1 -3.76224 | overlap 1083816 CGGTGATGGACGAAA CGCCGGCCCCGCCGGTG GTGAACGAGA CGCCGGCCCAGCCGGCG GTGGACGAGACGCCG TERM 1177 1083832 - 1083816 - g 73 -15.1 -2.90075 | overlap 1083789 CGGTGGTGAACGAGA CGCCGGC CCA GCCGGCG GTGGACGAGACGCCG Rru_A0907 1083320 - 1083982 + | microcompartments protein Rru_A0908 1083996 - 1084274 + | microcompartments protein TERM 1178 1084285 - 1084318 + F 100 -13.8 -4.47271 | GCTAAGGCGTTTGAA TCGGGCGGCCCGAC AAACCG GGCGGGCCGTCTGA TTTTCCTTGGGTTTC Rru_A0909 1084367 - 1085095 + | propanediol utilization protein TERM 1179 1085640 - 1085621 - g 70 -10 -3.63991 | opp_overlap 1085621 CAGTATCCTGAAGAA CGGCGAAG TCGT CTTCACCG ACGACGAGGCCACCG Rru_A0910 1085136 - 1085987 + | ethanolamine utilization protein eutJ Rru_A0911 1085984 - 1086826 + | hypothetical protein Rru_A0912 1086840 - 1087109 + | ethanolamine utilization protein EutN/carboxysome structural protein Ccml Rru_A0913 1087120 - 1087641 + | ATP:cob(I)alamin adenosyltransferase TERM 1180 1087718 - 1087770 + G 78 -14 -3.56092 | gap 2 CGACCCGTCTGCGGC CGCTCCCGCCCCGGCCGCGCCGGTCG CCC CGGCC-GCGCCGACGGC-CGGAAGCG TTTCCGAGATGATCG TERM 1181 1087868 - 1087923 + G 72 -8.9 -4.08216 | gap 3, opp_overlap 1087858 CTATAGTGCCCAGGC CGCCA-AGCCGGCCGTGGTC-CCG-GGC GCC GCCGCGTCGACCGAGGCCGGCGATGGGG TTTTCGACACCATGG Rru_A0914 1087641 - 1089230 + | aldehyde dehydrogenase TERM 1182 1089346 - 1089310 - f 70 -10.8 -3.53012 | gap 1, opp_overlap 1089329, overlap 1089274 1089319 GTCCGCCGCTCTAAA GAC-GATGAACCGGGGC CCCC GCCCCGGTCCCCCCGCC CGAGGGAGTCATCTC TERM 1183 1089336 - 1089319 - f 81 -14.1 -3.3062 | opp_overlap 1089329, overlap 1089310 TCTAAAGACGATGAA CCGGGGC CCCC GCCCCGG TCCCCCCGCCCGAGG Rru_A0915 1089413 - 1089712 + | hypothetical protein Rru_A0916 1089777 - 1090697 + | pyruvate-formate lyase-activating enzyme Rru_A0917 1090746 - 1091897 + | S-adenosylmethionine synthetase TERM 1184 1092735 - 1092719 - gf 70 -2.1 -4.63486 | overlap 1092720 1092721 ACGTGCTCAAGAAAA GCCGGTC GCA GATCGTC TCGCTGCAGACCGAG Rru_A0918 1091959 - 1093290 + | histidine kinase TERM 1185 1093862 - 1093874 + GF 75 -4.7 -4.60487 | CCAGACCGGCTATCA GGCGC TTG GCACC TTTTTGGGGGTCGTC TERM 1186 1094145 - 1094116 - gf 73 -9.3 -3.90291 | gap 1, opp_overlap 1094133 AGCTTGCCAAGGAAA CCCTGATC-GGCAC CGA GCGCCCGATCACGG CGATTTCCCAGGAAT TERM 1187 1094228 - 1094204 - gf 77 -5.5 -4.60924 | overlap 1094193 1094205 1094207 CAAATCCTTCAAAAA GGAGGTCGGCG TTT CGCCGACCGAA TACCGCCGGCAATCC TERM 1188 1094225 - 1094207 - gf 85 -16 -3.23975 | overlap 1094205 1094204 ATCCTTCAAAAAGGA GGTCGGCG TTT CGCCGACC GAATACCGCCGGCAA Rru_A0919 1093227 - 1094297 + | two component AraC family transcriptional regulator TERM 1189 1094360 - 1094327 - f 86 -13.9 -3.54129 | opp_overlap 1094330, overlap 1094330 GACACCGGGTTGAAA TCACCGCGTTAAGGG ACTC CCCTTAACGCGGTTT TATTTTGCGGCAAAG TERM 1190 1094357 - 1094330 - f 95 -20 -2.90615 | opp_overlap 1094330, overlap 1094327 ACCGGGTTGAAATCA CCGCGTTAAGGG ACTC CCCTTAACGCGG TTTTATTTTGCGGCA TERM 1191 1094330 - 1094357 + F 100 -20 -5.07652 | opp_overlap 1094327 1094330 ACCGGGTTGAAATCA CCGCGTTAAGGG ACTC CCCTTAACGCGG TTTTATTTTGCGGCA TERM 1192 1095832 - 1095854 + G 78 -10.5 -4.03234 | CCTGAGCGGCGGCCT CATCGGCCG CGACC CGGCCGAGG TTTATCTGGCCGCCG Rru_A0920 1094639 - 1095883 + | acetate kinase TERM 1193 1095967 - 1095941 - T 100 -23 -4.25104 | opp_overlap 1095941 CTCCCCTCACGAAAA GGGCGACCCGCC GAT GGCGGGCCGCCC TTTTTCATGGCACCG TERM 1194 1095941 - 1095967 + T 100 -20.8 -4.72272 | opp_overlap 1095941 CTCCCCTCACGAAAA GGGCGACCCGCC GAT GGCGGGCCGCCC TTTTTCATGGCACCG Rru_A0921 1096216 - 1095989 - | DNA-binding protein Rru_A0922 1096658 - 1096275 - | hypothetical protein TERM 1195 1096998 - 1096959 - R 100 -20.6 -5.80817 | overlap 1096961 GTGAAGACAAAAAAA GAGCGGCGCGGGGCGGCC GGGG GGCCGTCACGCGCCGCTT GGGAGGCTGAGGCGT TERM 1196 1096996 - 1096961 - R 100 -23.2 -4.53737 | overlap 1096959 GAAGACAAAAAAAGA GCGGCGCGGGGCGGCC GGGG GGCCGTCACGCGCCGC TTGGGAGGCTGAGGC Rru_A0923 1097930 - 1097019 - | hypothetical protein TERM 1197 1098753 - 1098772 + H 100 -7.8 -5.21709 | gap 1, overlap 1098730 CCGGGCATCAGGCCC GGGTCC-CC GGG GGAGGGCCC TTTTTTCCTCTCCCC TERM 1198 1098980 - 1098996 + G 70 -2.2 -4.62069 | opp_overlap 1098980 GCACCCCTTACCCAA GCTGTT GCTCA AACTGC TTTTTCCGATGGAGC TERM 1199 1099170 - 1099140 - g 88 -7.4 -5.08824 | overlap 1099141 CTGGGACTGAAAAAA CCGCTTCGGCCCGA GGC TCTGGGCGAGGCGA TCGCCGATGGCTCGA TERM 1200 1099554 - 1099581 + G 100 -9.8 -4.82901 | gap 1 GCCGCCACGGTCGGC GCGCTTGGCCTCG CCC CG-GGACAGGCGC TTTTTCTGGAAAACG Rru_A0924 1098816 - 1099739 + | mannose-6-phosphate isomerase TERM 1201 1101603 - 1101646 + G 74 -5.3 -4.57341 | gap 2, overlap 1101601 1101598 1101638 TCGAGGGCGGTCTGC GCTCGCT-GCGCTGGTTG-AT GACG ATCCAGACGGCGCCGGCGGGC TTTTTCCGGCCGGTT TERM 1202 1101918 - 1101907 - g 72 -5.8 -4.4078 | opp_overlap 1101910 1101912 TCGCCCCAATGAAAA TCGC GGCG GCGA GTCGGTGCTGTCCTA Rru_A0925 1099736 - 1102021 + | glycosyl transferase, group 1 TERM 1203 1102081 - 1102115 + F 82 -15 -3.15544 | overlap 1102083 TGAGAGGGACGCCAA TCGTCCTGGCGATCTG GTG CGGATCGCCAGGACTC TTGATCCAAGTCGAC TERM 1204 1102083 - 1102113 + F 100 -22 -3.14051 | overlap 1102081 AGAGGGACGCCAATC GTCCTGGCGATCTG GTG CGGATCGCCAGGAC TCTTGATCCAAGTCG TERM 1205 1102543 - 1102564 + G 71 -9.3 -3.79519 | overlap 1102544 1102546 ATCCCGACCAGTCGG GGGCGCCCG AGGG CGGGCGTCG TTTCATCATCAGCTT Rru_A0926 1102146 - 1103447 + | glycosidase Rru_A0927 1104445 - 1103444 - | luciferase-like TERM 1206 1104515 - 1104476 - R 91 -13.5 -3.75024 | gap 1, opp_overlap 1104475 CGCGACGAGGAACAA GACCGGCGCCCGATCCCG ATCAG CGGGA-CGGGCGGGGGCC CTTCCATATGGGGCG Rru_A0928 1104939 - 1104553 - | hydrogenase expression/synthesis, HypA TERM 1207 1104584 - 1104599 + g 70 -6 -4.27316 | overlap 1104576 1104590 1104591 GCGCTTTCCTCGACG CCCAGG TCTT CCAGGG TTTTGCCTTCGAAGG TERM 1208 1104590 - 1104614 + g 79 -3.5 -4.9725 | overlap 1104584 1104591 TCCTCGACGCCCAGG TCTTCCAGGGT TTT GCCTTCGAAGG TTTTTATGTGGAGCT TERM 1209 1104982 - 1104966 - H 71 -9.3 -3.74693 | CCTTATTCCAGCAAA GGCGCGG GCC CCTCGCC TAGGGGGGGCATGGC TERM 1210 1105667 - 1105642 - g 75 -4.5 -4.66535 | overlap 1105643 AAGGCCGAAAAGAAA GCGGCCAAGGC CCAG GCCATCGCCGA TCGCAAGGCGGCCGA Rru_A0929 1105426 - 1105827 + | hypothetical protein TERM 1211 1105883 - 1105920 + T 100 -19.9 -5.77853 | TCGCCTTATCGACCC CGCCGCCCGATCCGA GCCCGCTA TCGGAGCGGGCGGCG TTTTTTTTAAGCCTT TERM 1212 1105994 - 1105968 - T 100 -9.3 -5.75945 | overlap 1105969 ACGGGCTAAAAAAAA TCCCCGGGGCA GGAGG CACCCCGGGGC AGGTTGAGGGGATCG TERM 1213 1105993 - 1105969 - T 89 -12.8 -4.04482 | overlap 1105968 CGGGCTAAAAAAAAT CCCCGGGGCA GGAGG CACCCCGGGG CAGGTTGAGGGGATC Rru_A0930 1107172 - 1106021 - | Iron-containing alcohol dehydrogenase Rru_A0931 1108746 - 1107226 - | aldehyde dehydrogenase Rru_A0932 1109040 - 1111001 + | sigma54 specific transcriptional regulator TERM 1214 1111059 - 1111001 - f 79 -12.8 -3.44848 | opp_overlap 1111011, overlap 1110999 TCCCTGCATGAAATA GCCCGCCGCTCCGCCGGACCGGGGTG CGCCATC CCCCCCCGTCCGGCGGTTTGCCGCGC GCGGGTCCCCTGGGA TERM 1215 1111011 - 1111049 + F 100 -18.8 -3.53012 | opp_overlap 1110999 1111001 AAATAGCCCGCCGCT CCGCCGGACCGGGGTG CGCCATC CCCCCCCGTCCGGCGG TTTGCCGCGCGCGGG TERM 1216 1111155 - 1111137 - f 71 -8.8 -3.74693 | CTTTAGTGTATCAAA GCTCTCGC AAG GGGAGAGC GCGCGATGATTCCTC TERM 1217 1111692 - 1111724 + G 73 -6.1 -4.36914 | TGGAACGGCCAAAGG GCGGGAAGCTTCGGC GAT GCCAGCGCTTTCAGC TTTTATCCGACGAAG Rru_A0933 1111161 - 1112291 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1218 1112975 - 1112985 + G 79 -4.6 -4.72497 | CTGCGTGCTCTCCGA GGTC GAC GGCC TTTTGTTCCTCAATG Rru_A0934 1112304 - 1114025 + | hypothetical protein Rru_A0935 1114135 - 1115001 + | NAD-dependent epimerase/dehydratase Rru_A0936 1115015 - 1116124 + | hypothetical protein Rru_A0937 1117336 - 1116104 - | coenzyme F420 hydrogenase/dehydrogenase beta subunit-like TERM 1219 1116349 - 1116371 + g 73 -9 -3.90744 | overlap 1116333 TCGCCCGCACCGGCA TGCCGCCGGC GGC GCGGGCGACA TTCTTTAAGAAGCCA TERM 1220 1116924 - 1116954 + g 76 -16 -2.82623 | overlap 1116921 1116943 TGGCCCATGCGCATG CCCCGGCAGCGGGC CAT GTCCGCGGCCTGGG TGATTATCACCGGCA Rru_A0938 1118449 - 1117496 - | glycosyl transferase family protein TERM 1221 1118244 - 1118264 + g 78 -10.4 -4.07885 | gap 1 AGGACCCCCTTATGG CGCGCGGCG GCGG CGCCG-GCG TTTTCCGAGCGGATC TERM 1222 1118582 - 1118605 + r 78 -4.6 -4.82901 | gap 1 GCGGGCGAAGGCGGT GATCTTACACC TAA GG-GTAGGGTC TTTTTATCGCAAAGA TERM 1223 1118680 - 1118728 + r 100 -18.2 -3.89572 | gap 1, overlap 1118681 TCAGCCACCGCTCAT CGCCCG-GAACTCGGCCTCGCTG AGGA CGGTCAGGCCGAGTTCGCGGGCC TTCTTCTCCTTGGAT TERM 1224 1118681 - 1118727 + r 100 -21.7 -2.9302 | gap 1, overlap 1118680 CAGCCACCGCTCATC GCCCG-GAACTCGGCCTCGCTG AGGA CGGTCAGGCCGAGTTCGCGGGC CTTCTTCTCCTTGGA Rru_A0939 1120761 - 1118665 - | DNA ligase (NAD+) TERM 1225 1119006 - 1118992 - G 85 -5.6 -5.00616 | overlap 1118993 1119000 CTCTTCGCCAAAAAA GGCGAC AAG GTCGCG GGCGACCGAGGGGCC Rru_A0940 1122537 - 1120804 - | DNA repair protein RecN Rru_A0941 1123429 - 1122551 - | competence lipoprotein ComL, putative TERM 1226 1123656 - 1123710 + H 71 -6.4 -4.15833 | gap 3, overlap 1123659 CCTGCTCGCAGGCTT GAT--GCCCCGGGCCCGGTAGG-CGCG CGAT CGCGTTCTCCCCGGTTCGGGGCTTGTC TTTTCCCGTGCTCAT TERM 1227 1123659 - 1123705 + H 95 -16.5 -3.96506 | gap 1, overlap 1123656 GCTCGCAGGCTTGAT GCCCCGGGCCCGGTAGG-CGCG CGAT CGCGTTCTCCCCGGTTCGGGGC TTGTCTTTTCCCGTG Rru_A0942 1123777 - 1124187 + | nucleoside diphosphate kinase regulator lpxC 1125338 - 1124295 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 1228 1125539 - 1125551 + r 70 -10.5 -3.46602 | opp_overlap 1125517 TCTATCCCTGGGACG CGGCG GAA CGCCG TTATCCTCTCAGGCG TERM 1229 1125565 - 1125577 + r 70 -10.5 -3.46602 | CGTTATCCTCTCAGG CGGCG GAA CGCCG TTATCCTCTCAGACG TERM 1230 1125591 - 1125603 + r 70 -10.5 -3.46602 | CGTTATCCTCTCAGA CGGCG GAA CGCCG TTATCCTCTCAAGCG TERM 1231 1125645 - 1125703 + r 74 -7.4 -4.40552 | gap 4, overlap 1125644 1125647 CTATGCGCCAAGGCG CCCATGCGC--GCG-CGGCGC-CGCCCCTG GTC CAGGGGCGCGCGCCGGTACAAGAGCGTGCG TATTTTTTTGGTGAG Rru_A0944 1127841 - 1125844 - | cell division protein FtsZ TERM 1232 1126918 - 1126899 - G 70 -10 -3.68351 | TGGCGACGACGGAAA CCCGGATG TGGC CATCCAGG CTCGGATCCAGGCTG Rru_A0945 1129308 - 1127986 - | cell division protein FtsA TERM 1233 1129248 - 1129284 + g 77 -10.7 -3.79251 | overlap 1129252 GCGGGGCCGCCCTGT GATCCTTCCGCCGCGTC CGG GCCGCGGTGGGGGTGTC TTTGCTGATGGCGTC TERM 1234 1129252 - 1129280 + g 71 -12.3 -3.31162 | overlap 1129248 GGCCGCCCTGTGATC CTTCCGCCGCGTC CGG GCCGCGGTGGGGG TGTCTTTGCTGATGG Rru_A0946 1130296 - 1129301 - | cell division protein FtsQ TERM 1235 1129543 - 1129565 + g 85 -10.4 -4.22652 | CCGAGGGGTCCTCCT CGGGCAGGCG GAC CACCAGCCCG TTTTCGATGCTGTCC Rru_A0947 1131192 - 1130284 - | D-alanine--D-alanine ligase Rru_A0948 1132148 - 1131189 - | UDP-N-acetylmuramate dehydrogenase murC 1133590 - 1132145 - | UDP-N-acetylmuramate--L-alanine ligase murG 1134750 - 1133587 - | N-acetylglucosaminyl transferase TERM 1236 1134269 - 1134213 - G 70 -11.4 -3.36492 | overlap 1134217 CGCGCAAGGCCAGAA CCGAG-GGCCGCACCGGCATGCCGACGA CCA CCGGCCGGGCGCCG-CGCGGCCGCTCGG CCCGGGCGAAGGACA Rru_A0951 1135928 - 1134750 - | cell cycle protein TERM 1237 1135625 - 1135613 - G 88 -10.5 -4.4261 | overlap 1135599 1135615 GGGCGAACAGCAAAA CGGCG ATG CGCCG CACCCACAGCACCGG Rru_A0952 1137358 - 1135925 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 1238 1136078 - 1136056 - G 72 -5.4 -4.34402 | overlap 1136059 CCGGCGACAGCAAAA CGACGGCGCC GGG GATGGCGTCG CGCCAGGCGGCCTTG Rru_A0953 1138451 - 1137369 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1239 1137444 - 1137459 + g 70 -6.1 -4.18506 | CCGGATCACCACCGT GGGCT CGGCCC AGCCC TTCTTTTCGAAATGA Rru_A0954 1139951 - 1138485 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 1141429 - 1139948 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 1240 1140592 - 1140559 - G 70 -3.8 -4.56597 | opp_overlap 1140579 GGTGCCGGCCAAAAA GCTCGAGGTCCA-GGC TCTG GCCATGGGCCTTG-GC GCTGACGCCGGCAAG TERM 1241 1140992 - 1140979 - G 71 -9.5 -3.85698 | opp_overlap 1140969 CGGCCCGCCGATAAA CGCCG CTTT CGGCG CCGAGCGTCCCCAGG TERM 1242 1141399 - 1141350 - G 70 -11.2 -3.57144 | gap 1 CCGGCGATCGCCAAA CCAG-GATGGCCGCCCAGGCCAG GGTGG CCGCCCAGGGCGGCCCGCGCCGG AACGGCGCCGATCAG Rru_A0956 1143215 - 1141416 - | peptidoglycan glycosyltransferase Rru_A0957 1143682 - 1143212 - | secreted (periplasmic) protein-like Rru_A0958 1144659 - 1143679 - | methyltransferase Rru_A0959 1145123 - 1144656 - | MraZ protein TERM 1243 1145304 - 1145264 - R 95 -6.7 -5.46657 | opp_overlap 1145295, overlap 1145265 CAGCCGAACAAAAAA GTTGCGATTCGCCCGATAC CAA GTATTGGGCGCCTCGCGAA GGGCGGCTTGATGCA TERM 1244 1145303 - 1145265 - R 78 -10.2 -3.86909 | opp_overlap 1145295, overlap 1145264 AGCCGAACAAAAAAG TTGCGATTCGCCCGATAC CAA GTATTGGGCGCCTCGCGA AGGGCGGCTTGATGC Rru_A0960 1146607 - 1145882 - | AmpD (negative regulator of AmpC) Rru_A0961 1147387 - 1146614 - | hypothetical protein TERM 1245 1147020 - 1147038 + g 95 -5.2 -5.44721 | overlap 1146998 ATCTGCCGGGCATAG GCCTCG TAGCCGT CGGGGC TTTTTTTCGCCTCGT Rru_A0962 1148090 - 1147596 - | GCN5-related N-acetyltransferase Rru_A0963 1148602 - 1148144 - | MifU-like protein, Fe-S cluster formation TERM 1246 1148177 - 1148188 + g 73 -3.6 -4.58283 | GCTCTGTACCAGGGG GCCT CCGA GGGC TTTTTCAACGGCTTC TERM 1247 1148281 - 1148297 + g 85 -5.1 -5.07486 | GAGTAGCCCAGGGAG CACCC GGAGGGG GGGTG TTTTTCTTGAGCATC Rru_A0964 1148955 - 1148599 - | sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis Rru_A0965 1149198 - 1149695 + | (2Fe-2S)-binding protein TERM 1248 1150649 - 1150670 + G 82 -4.3 -4.85599 | opp_overlap 1150648 1150651, overlap 1150651 CAAGCCGATCAAATG GACCTCGGA CCGC TCGGAGGCC TTTTTGTCCGATGCC TERM 1249 1151441 - 1151420 - g 74 -10.1 -3.7732 | opp_overlap 1151409, overlap 1151401 TGGCGACACCAATAA GGTGCCCTT TGGC ATGGGCACC TATGGCTCGCGCTCG Rru_A0966 1149768 - 1152179 + | xanthine dehydrogenase, molybdenum binding subunit apoprotein Rru_A0967 1152216 - 1153013 + | carbon-monoxide dehydrogenase Rru_A0968 1153010 - 1153954 + | ATPase TERM 1250 1154716 - 1154736 + G 72 -5.3 -4.32857 | overlap 1154699 1154719 GTCGGGCTGGCTGGC GAGCGCCAG CGC CTGGGGGTC TTTCTGTTTGGCACC Rru_A0969 1153951 - 1155216 + | VWA containing CoxE-like TERM 1251 1155284 - 1155230 - f 85 -12.8 -3.71255 | opp_overlap 1155232 1155232, overlap 1155222 1155227 AGAACGACTGAACAA GGCGCGCGCCGCCAAGCGGC-CCGCC GTTCT GGTGACGGCGCTTGACGGCG-GTGCC CAGGCGCTGATCATC Rru_A0970 1155261 - 1155911 + | hypothetical protein Rru_A0972 1158396 - 1157443 - | prephenate dehydrogenase Rru_A0971 1155908 - 1157548 + | hypothetical protein TERM 1252 1158270 - 1158256 - Gf 72 -7 -4.18018 | GTGGGGCACGCAAAA GGCGCC GAA GGCCCC CAGGCCGATCAGCCC TERM 1253 1158476 - 1158445 - fH 76 -6.5 -4.56597 | overlap 1158446 1158447 GGGCCGGTCCAAAAA CGCGAGATGCCGC TCCGCG GCGGCATCTGGAA ACAACAAAGCTGGTT Rru_A0973 1158739 - 1159161 + | hypothetical protein Rru_A0974 1159249 - 1160091 + | Linocin_M18 bacteriocin protein TERM 1254 1160247 - 1160300 + F 100 -28.4 -3.28712 | opp_overlap 1160263, overlap 1160263 GACGCCAGTGCTTCC GGCTTCCAATGCAAAACCCCCGCC CTCCGT GGCGGGGGTTTTGCGTTGGAGGGC TTGTGACGGCCGGGG TERM 1255 1160263 - 1160284 + F 100 -14.4 -4.27316 | opp_overlap 1160263, overlap 1160247 GCTTCCAATGCAAAA CCCCCGCC CTCCGT GGCGGGGG TTTTGCGTTGGAGGG TERM 1256 1160284 - 1160263 - f 100 -14.4 -4.27316 | opp_overlap 1160263 1160247 GCTTCCAATGCAAAA CCCCCGCC CTCCGT GGCGGGGG TTTTGCGTTGGAGGG Rru_A0975 1160356 - 1160613 + | prevent-host-death protein TERM 1257 1160742 - 1160754 + T 100 -9.1 -5.37345 | opp_overlap 1160742, overlap 1160735 AGGGGTCCGAAAAAA GGGGT TAG ACCCC TTTTTTATGCTTCCG TERM 1258 1160754 - 1160742 - T 100 -9.1 -5.00884 | opp_overlap 1160742 1160735 AGGGGTCCGAAAAAA GGGGT TAG ACCCC TTTTTTATGCTTCCG TERM 1259 1160955 - 1160965 + T 78 -6.8 -4.59773 | ATATCATCGGTATCT CGTG GCC CACG TTTTTCGAGGTGAGG TERM 1260 1161654 - 1161630 - T 100 -10.1 -5.27938 | opp_overlap 1161636, overlap 1161636 ACTTTTAAAGAAAAA GAAAAAGGGGT CGG ACCCCTTTTTA TAGGACGGAACCTCT TERM 1261 1161648 - 1161636 - T 100 -9.1 -5.77734 | opp_overlap 1161636, overlap 1161630 AAAGAAAAAGAAAAA GGGGT CGG ACCCC TTTTTATAGGACGGA TERM 1262 1161636 - 1161648 + T 100 -9.1 -4.82901 | opp_overlap 1161636 1161630 AAAGAAAAAGAAAAA GGGGT CGG ACCCC TTTTTATAGGACGGA TERM 1263 1162314 - 1162324 + T 74 -3.2 -4.86621 | CTCTAATTGGAAATT CGAC GCA GTTG TTTTTCATTAGGGCT TERM 1264 1162553 - 1162566 + T 84 -5.3 -5.00642 | opp_overlap 1162553 TAGGTTTTAAAAAGG GCAAT CAGG ATTGC TTTTTCTGTCCGTTC TERM 1265 1162624 - 1162636 + T 70 -3.3 -4.58685 | opp_overlap 1162625, overlap 1162625 AAAAAGTAGAGGAAA AGGGT CTG ACCCC TTTTTGGACCCCTTT TERM 1266 1162635 - 1162625 - T 74 -6.8 -4.41797 | opp_overlap 1162625 1162624 AAAAGTAGAGGAAAA GGGT CTG ACCC CTTTTTGGACCCCTT Rru_A0976 1162995 - 1162666 - | transcriptional modulator of MazE/toxin, MazF Rru_A0977 1163294 - 1162992 - | hypothetical protein TERM 1267 1163459 - 1163485 + H 80 -10.2 -4.0371 | GCGGGGGGCTTTGTC TTGGCAAGAGGC GAT GTCTCTTGCGAA TTTATCTAAAAAATA TERM 1268 1163596 - 1163584 - H 84 -3.3 -5.252 | overlap 1163585 CACGCTGATAAAAAA GCGGA AAA TCCGT CGCCTGTTCTGGCAT Rru_A0978 1163653 - 1164162 + | MarR family transcriptional regulator Rru_A0979 1164259 - 1165851 + | extracellular solute-binding protein Rru_A0980 1165951 - 1166892 + | binding-protein dependent transport system inner membrane protein Rru_A0981 1166913 - 1167857 + | binding-protein dependent transport system inner membrane protein Rru_A0982 1167861 - 1169486 + | ABC transporter component TERM 1269 1170916 - 1170932 + G 88 -15.1 -3.90922 | CACCCGCTGGCCCGC CCGGCGG CCG CCGCCGG TTCTTTCCCCCGCGT Rru_A0983 1169495 - 1170952 + | amidase TERM 1270 1171353 - 1171363 + G 72 -4.6 -4.49756 | TACCCGGGCTTTCGC CGGC ACC GTCG TTTTCATCTTTCAGC TERM 1271 1171507 - 1171532 + G 74 -8.1 -4.23213 | opp_overlap 1171507 1171508, overlap 1171508 ACGGTGATGGTCAAA CCCGGCCCGGC GATG GCCGGATCGGA TTTCTTCGATATCCG Rru_A0984 1170967 - 1172160 + | peptidase M20D, amidohydrolase TERM 1272 1173541 - 1173519 - g 79 -16.2 -3.05384 | CCGCGCCCTATTGAA GCGCCCCGCC GAT GTCGGGGCGC GCTATGGCGGCGAGG Rru_A0985 1172317 - 1173843 + | diguanylate cyclase Rru_A0986 1173890 - 1174483 + | hypothetical protein Rru_A0987 1174513 - 1175127 + | glutathione S-transferase-like protein TERM 1273 1175149 - 1175137 - T 73 -4.7 -4.67234 | opp_overlap 1175136, overlap 1175128 AGCTAACGGCAAAAA GTGGC CTT GCCGC CTTACATCTTGTCGA TERM 1274 1175228 - 1175172 - T 75 -13.3 -2.94099 | overlap 1175170 CTTGTCGACCACATA GCCGGCGCCGACGCCAACGGCGCCGCC GAT GGCCGCGCCACAGGCCACGCAGCCGCC GGTCAGCGCCGTGCC Rru_A0988 1175369 - 1175151 - | outer membrane protein Rru_A0989 1176532 - 1175483 - | twin-arginine translocation pathway signal TERM 1275 1175920 - 1175965 + g 74 -12.6 -3.53224 | opp_overlap 1175920 1175921 1175923, overlap 1175928 TCATCTTTTCCAAAA CGATCGTGCCGCCGGCGC-CGC CATG GCGCGCGCCGGCGGTGT-ATCC TTTGCGGAAGCGCTC TERM 1276 1175928 - 1175958 + g 100 -21.9 -3.05769 | gap 1, opp_overlap 1175923 1175921 1175920, overlap 1175920 TCCAAAACGATCGTG CCGCCGGCGC-CGC CATG GCGCGCGCCGGCGG TGTATCCTTTGCGGA Rru_A0990 1179009 - 1176529 - | diguanylate cyclase/phosphodiesterase TERM 1277 1177998 - 1177962 - G 71 -9.4 -3.83998 | gap 2, overlap 1177963 GCATGCCATAGGAAA GCCGGTCGAGGCGGGCGA CGA TCGCCCGCC-CGA-CGTA GAGCCAGGCGATGAG TERM 1278 1179328 - 1179344 + G 75 -7.2 -4.36914 | overlap 1179329 GTTTTCCCCTTTGTT TCCCGC GGTGA GCGGGG TTTTCTGGAGCGCGG TERM 1279 1179640 - 1179660 + G 87 -6.7 -5.06451 | opp_overlap 1179627, overlap 1179642 AGGGCGCTGTTGTGG GCCGACGCC ATC GGCATCGCC TTTTTTACGGTGGTC Rru_A0991 1179289 - 1180005 + | hypothetical protein Rru_A0992 1180230 - 1180565 + | hypothetical protein TERM 1280 1180580 - 1180600 + F 80 -11.1 -3.71686 | GGGACGGGGGCGGGG GCCGCCC GGGCTTG GGGCGGC TTCTCTTGACTTCGG TERM 1281 1181593 - 1181608 + G 85 -10.4 -4.17048 | GTTCGCCAGATCGCC CCGTCG CGGG CGACGG TTCTTTTGCGCGGGG TERM 1282 1182049 - 1182087 + G 72 -8.8 -4.06419 | gap 1 ATCTTCCTGCCGGCC CTGCGCGAGC-GCCGCG AGGACG TGCCGCTGCTCGCCCAG TTCTTTCTGACCAAG Rru_A0993 1180876 - 1182678 + | transcriptional regulator NifA TERM 1283 1182968 - 1182937 - g 76 -15 -3.14132 | GCCTCCCGCGACCAA GTGCCGCCCCCGGC CGCC GCCGAGGGCTGCGC TTCGCAGGGGCGCTG TERM 1284 1183186 - 1183160 - g 70 -8.7 -3.90291 | gap 1 ATTGCGCCAATGAAA GCCGCCCCGGAG TCGT CTCCG-AACGGC TGACGCCCGAGCAGG Rru_A0994 1182865 - 1184376 + | nitrogenase cofactor biosynthesis protein NifB Rru_A0995 1184452 - 1184637 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1285 1184648 - 1184694 + F 95 -12.9 -4.15044 | gap 1, overlap 1184651 GCTGACCGGACGCGG GACCCGGGATCGGCCAG-CGCT TGGG GGAGACTGGCCGGTCCCGGTGC TTTCTTGACGACGGG TERM 1286 1184651 - 1184691 + F 87 -17.6 -3.10244 | gap 1, overlap 1184648 GACCGGACGCGGGAC CCGGGATCGGCCAG-CGCT TGGG GGAGACTGGCCGGTCCCGG TGCTTTCTTGACGAC Rru_A0996 1184734 - 1185558 + | leucine-rich repeat-containing protein Rru_A0997 1185564 - 1185857 + | NifZ Rru_A0998 1185854 - 1186069 + | NifT/FixU Rru_A0999 1186073 - 1186930 + | hypothetical protein TERM 1287 1187089 - 1187138 + G 71 -12.1 -3.34517 | gap 1, overlap 1187089 1187086 CGCCCTGGGCGGGTT G-GTCGGATCGCCGACGGCGGGAG TCT TTGCCGTCCTCGCCGATCCGGCGC TCTTTGCCCAGGCCT Rru_A1000 1186940 - 1187254 + | hypothetical protein TERM 1288 1187368 - 1187332 - T 100 -11.7 -4.91109 | opp_overlap 1187358, overlap 1187335 1187349 CTGCCACGACAAAAA GAATCGCGCCATTATAA GCC TCATAATGGCGCGATAA CCCCTTGCGCGCCAT TERM 1289 1187365 - 1187335 - T 100 -17.8 -4.56153 | opp_overlap 1187358, overlap 1187332 1187349 CCACGACAAAAAGAA TCGCGCCATTATAA GCC TCATAATGGCGCGA TAACCCCTTGCGCGC TERM 1290 1187411 - 1187369 - T 100 -21.5 -3.30338 | gap 1, opp_overlap 1187358 1187410, overlap 1187349 1187370 1187399 ATAATGGCGCGATAA CCCCTTGCGCGCCATTATGG TCGC CCA-AATGGCGCGCAAGGGC GGGGCGCCCGGTTAA TERM 1291 1187410 - 1187370 - T 100 -25 -2.57881 | gap 1, opp_overlap 1187358, overlap 1187349 1187369 1187399 TAATGGCGCGATAAC CCCTTGCGCGCCATTATGG TCGC CCA-AATGGCGCGCAAGGG CGGGGCGCCCGGTTA Rru_A1001 1188226 - 1187423 - | ABC transporter component Rru_A1002 1189326 - 1188229 - | amino acid ABC transporter permease Rru_A1003 1190526 - 1189330 - | amino acid ABC transporter permease TERM 1292 1190618 - 1190584 - R 83 -15.7 -3.06831 | gap 1 TCAATGCCCATGGAA GCCGGGCGACGGGAGA GAGG CCCCCCGCCGCCC-GC GGACAGGTTAGCGGA Rru_A1004 1191648 - 1190626 - | lysine-arginine-ornithine-binding periplasmic protein TERM 1293 1192902 - 1192921 + G 72 -7.1 -4.26344 | CATGATGTGCATCCT GCTTGGC CTCGTC GCCGAGC TTTTGGTGCGCATCT TERM 1294 1192988 - 1192958 - g 72 -4.7 -4.49344 | gap 1, opp_overlap 1192967 AAAGCCAGGACAAAA CCGCCTAT-ACGGT CAAA ACCGTGATTCGCGG CAAGGGCGGCAAGGG Rru_A1005 1191973 - 1193007 + | glycosyl transferase family protein TERM 1295 1193060 - 1193045 - f 84 -11.8 -4.13767 | opp_overlap 1193046, overlap 1193046 GGCCGTATTGGAAAA GGGGGG GCTT CCCCCC TTTTTTCATGGGGGC TERM 1296 1193046 - 1193060 + F 100 -12.8 -5.14563 | opp_overlap 1193045 1193046 GCCGTATTGGAAAAG GGGGGG CTT CCCCCC TTTTTTCATGGGGGC TERM 1297 1193060 - 1193046 - f 72 -12.8 -3.08046 | opp_overlap 1193046, overlap 1193045 GCCGTATTGGAAAAG GGGGGG CTT CCCCCC TTTTTTCATGGGGGC TERM 1298 1193685 - 1193716 + G 79 -2.2 -5.07652 | overlap 1193686 1193689 TTGGTCTCTTAGTTT TGAGGCCGCCTATT ACCT GATAAGTGGCATCG TTTTATTTTCAAGAC Rru_A1006 1193230 - 1194330 + | acyltransferase 3 Rru_A1007 1194822 - 1194391 - | nitrogenase-associated protein Rru_A1008 1195733 - 1194849 - | ADP-ribosyl-(dinitrogen reductase) hydrolase Rru_A1009 1196640 - 1195765 - | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase TERM 1299 1196067 - 1196037 - G 81 -11.1 -4.08557 | gap 1 CGCGGTAAAGAAGAA GCGCGGACTCGCCG GGGG CGGCGAAGC-GCGC CAGGGCCCACTGACA TERM 1300 1196662 - 1196680 + H 70 -3.1 -4.59853 | opp_overlap 1196665, overlap 1196665 ACCCTCCGTCCTGAC CAAGAAC TGTGC GTTCGTG TTTTTCGCCCATTCC nifH 1196999 - 1197886 + | nitrogenase reductase TERM 1301 1198132 - 1198105 - g 78 -6.2 -4.70626 | gap 1, overlap 1198096 1198108 GAAGAAGCGCAAAAA GCACCTTGGCACC ATC GTTGCCGAGG-GC GAGGGCAGCTCTTGC Rru_A1011 1198007 - 1199470 + | nitrogenase molybdenum-iron protein alpha chain TERM 1302 1200726 - 1200710 - g 74 -7.9 -4.27796 | CAAGAAATGGGAAAA GCAGGTC AAG GCCCTGC TCGCCACCAGCCCGT Rru_A1012 1199508 - 1201040 + | nitrogenase molybdenum-iron protein beta chain TERM 1303 1201110 - 1201147 + F 100 -14.7 -5.60993 | overlap 1201112 TGGTCGCGTCCCTCC TTCCGCCGTCCCCGGGG TCCA TCCCGTGGACGGCGGTC TTTTTTTGTCGAAGG TERM 1304 1201112 - 1201145 + F 100 -21.7 -4.45201 | overlap 1201110 GTCGCGTCCCTCCTT CCGCCGTCCCCGGGG TCCA TCCCGTGGACGGCGG TCTTTTTTTGTCGAA TERM 1305 1202829 - 1202801 - g 78 -10.1 -4.07687 | AGCCCTCGGCCAAAA GCCCGGCCAAGCC GGC GGCGCGGCCGACC AAGCTGTCTTACAAG Rru_A1013 1201234 - 1203066 + | ABC transporter component TERM 1306 1203446 - 1203420 - g 83 -15.1 -3.72576 | opp_overlap 1203411 1203421 GCCGCCCCGACCAAA CCGCCTGCGCC GCTTT GGCCCAGGCGG TGATCGATGATCTGG Rru_A1014 1203101 - 1203481 + | hypothetical protein TERM 1307 1203489 - 1203469 - T 78 -15.4 -2.62616 | overlap 1203481 TGATCTGGGACATGA CCCGCGCC AATAG GGCGCGGG CCGAAGTCCTGAGAG Rru_A1015 1204389 - 1203553 - | binding-protein dependent transport system inner membrane protein Rru_A1016 1205381 - 1204389 - | binding-protein dependent transport system inner membrane protein Rru_A1017 1206544 - 1205378 - | spermidine/putrescine ABC transporter ATP-binding subunit TERM 1308 1205559 - 1205587 + g 78 -6 -4.65895 | gap 2, opp_overlap 1205540 ATGTCCTTGACCTCG CCCG-CCG-CCC AGTTATA GGGCCGGTCGGG TTTTTCGGTGACCAG TERM 1309 1205944 - 1205963 + g 81 -5.6 -4.82901 | overlap 1205950 1205954 TGTTGACCAGATCGA GCTGGGTG CGTT CGCGCAGC TTTTTATCGAGCGCC TERM 1310 1206458 - 1206502 + g 74 -5.5 -4.56597 | opp_overlap 1206421, overlap 1206460 CTCGATCTCGATGAT CGGCGGCCCAAGTTTTTTGGT ACA GCCCGGAAGCTCGGGCGGCAG TTTTTGCGACCGCGC TERM 1311 1206608 - 1206576 - R 87 -17.1 -3.09452 | gap 1 ACGCGGGAAGACAGA CCCGGTACCCGTCG ACAGAG CG-CGGGTACCGGG CGAAAGCGGATGTGT Rru_A1018 1207752 - 1206643 - | extracellular solute-binding protein TERM 1312 1208991 - 1209031 + G 70 -11 -3.53811 | GGGCTGTCCCATGCC TGGGGCGGCCATGTGGCG ATCAC CGTCAACCGGCTGCCCCA TTTCGGGCGGATCGG Rru_A1019 1207986 - 1209260 + | FAD dependent oxidoreductase TERM 1313 1209357 - 1209322 - T 100 -25.6 -3.72678 | gap 1, opp_overlap 1209328, overlap 1209328 GAAAGACGATCCAAA CGAAAACCGCCGCCCGG GGT CCGGGCGGCGGTTT-CG CGGCACAGGGGCGGG TERM 1314 1209328 - 1209352 + T 100 -24.3 -3.53012 | opp_overlap 1209322 1209328 CGATCCAAACGAAAA CCGCCGCCCGG GGT CCGGGCGGCGG TTTCGCGGCACAGGG TERM 1315 1209352 - 1209328 - T 100 -24.3 -4.56914 | opp_overlap 1209328, overlap 1209322 CGATCCAAACGAAAA CCGCCGCCCGG GGT CCGGGCGGCGG TTTCGCGGCACAGGG Rru_A1020 1209801 - 1209394 - | cytochrome c, class I TERM 1316 1210032 - 1210050 + H 81 -5.2 -5.00616 | CATTTTAGCACCTTT GGCCTTTG GAA TAACGGCC TTTTTTCCACCCGGA Rru_A1021 1210454 - 1211374 + | RNA polymerase factor sigma-32 TERM 1317 1211434 - 1211459 + T 100 -16.9 -5.48825 | opp_overlap 1211434 TCGCCTTAAGAAAAA GGGTGGGGAGC AAAC GCTTCCCACCC TTTTTTTGACTGATC TERM 1318 1211459 - 1211434 - T 100 -14.7 -5.06414 | opp_overlap 1211434 TCGCCTTAAGAAAAA GGGTGGGGAGC AAAC GCTTCCCACCC TTTTTTTGACTGATC Rru_A1022 1212210 - 1211485 - | hypothetical protein TERM 1319 1212231 - 1212246 + r 77 -11.8 -3.63744 | opp_overlap 1212201, overlap 1212211 GGCTCTCCTGGGAAT CCGGGC CAGG GCCCGG TCTTTTCGACGCAAG Rru_A1023 1212678 - 1212409 - | hypothetical protein TERM 1320 1212907 - 1212888 - g 86 -9.2 -4.62336 | AGCTGACCGGAAAAA CGCCGACG GGCG CACCGGCG ATGGCCGGGCAGGCG TERM 1321 1213286 - 1213330 + G 71 -15 -2.5655 | opp_overlap 1213281, overlap 1213285 CTTTACGACACCGTC GCC-GCTGCGGCGCGGATGGGC GGC GGCCATCCGGGC-GCGGCCGGC CTTGATCTGCCTGAA Rru_A1024 1212863 - 1213660 + | phage repressor TERM 1322 1213987 - 1214002 + G 73 -6 -4.38712 | overlap 1213971 1213976 CCGCCCGATCGCGGC GCCTGC CTTG GCCGGC TTTTCTGGCCATCAC Rru_A1025 1213848 - 1214456 + | rare lipoprotein A Rru_A1026 1215140 - 1214718 - | MerR family transcriptional regulator TERM 1323 1215909 - 1215944 + G 83 -3.1 -5.15167 | gap 1, overlap 1215911 1215917 GCCCTTGGCGCCGTC GCCCTGGGC-GCGGTT GAGGA AGCCGCCGCCGTGGTC TTTTTGTTCCTGGTC TERM 1324 1216527 - 1216546 + G 77 -10.6 -3.85698 | CTGGTTATTTCAACG CCGGCGGC GATC GCGGCCGG TTTGTCGGCGGGGGC Rru_A1027 1215225 - 1217558 + | (Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Rru_A1028 1217621 - 1217887 + | hypothetical protein Rru_A1029 1218939 - 1217884 - | AraC family transcriptional regulator TERM 1325 1218994 - 1218958 - R 91 -13.6 -3.85698 | opp_overlap 1218947 1218967, overlap 1218959 GGCCTCGCCGATAAA GGCCAACGGCCCCGCG CCTGT CGCGGGGCCGTCGAAA CGGTCGGGGATATCT TERM 1326 1218993 - 1218959 - R 85 -17.1 -2.91276 | opp_overlap 1218947 1218967, overlap 1218958 GCCTCGCCGATAAAG GCCAACGGCCCCGCG CCTGT CGCGGGGCCGTCGAA ACGGTCGGGGATATC Rru_A1030 1220468 - 1219044 - | amino acid permease-associated region Rru_A1031 1221280 - 1220465 - | ethanolamine ammonia-lyase small subunit Rru_A1032 1222679 - 1221288 - | ethanolamine ammonia-lyase heavy chain TERM 1327 1221731 - 1221675 - G 72 -13 -3.08278 | gap 1, overlap 1221669 1221690 GGAATCATACAGATA TTCCGGGCCGATAAAGCCGACGACCGT ATTG ACGATCAGCGGCTTGAA-GGCCCGGCA GACCGCATAGGCGCG TERM 1328 1221717 - 1221690 - G 74 -9.8 -3.85698 | overlap 1221675 TTCCGGGCCGATAAA GCCGACGACCGT ATTG ACGATCAGCGGC TTGAAGGCCCGGCAG TERM 1329 1222893 - 1222864 - R 100 -19.3 -4.72272 | opp_overlap 1222852 GCTCCCCAGCAAAAA GGCCCCGGCTCGT TTCA AGGAGCCGGGGCC TTCCGCCAAGGGTTA TERM 1330 1222936 - 1222916 - R 100 -10.3 -5.25803 | opp_overlap 1222925 AAGGGTTATAAAAAA GCGGGCTAC TCT GCCGCCCGC AGGTTGATCGCGGAA Rru_A1033 1223427 - 1222921 - | hypothetical protein Rru_A1034 1223706 - 1225967 + | multi-sensor Signal transduction histidine kinase Rru_A1035 1228820 - 1226067 - | diguanylate cyclase/phosphodiesterase TERM 1331 1227833 - 1227848 + g 75 -4.6 -4.65219 | overlap 1227833 GTTCGTTGCTCTCAC GAAGCC GGGT GGCGTC TTCTTTTTGTCTTCT TERM 1332 1227833 - 1227851 + g 86 -4.5 -5.1523 | overlap 1227833 GTTCGTTGCTCTCAC GAAGCCG GGTGG CGTCTTC TTTTTGTCTTCTCCA TERM 1333 1228206 - 1228194 - G 75 -9.1 -4.08767 | GCGATCTTCCGAAAA CAGGC TGA GCCTG TCCCTCCCGCCCAGG TERM 1334 1228281 - 1228298 + g 77 -6.9 -4.54449 | opp_overlap 1228252, overlap 1228271 CATGGCGACGATGCC GCCGAAG GTTC CGTCGGC TTTTGTGTAGGATCT TERM 1335 1228365 - 1228389 + g 100 -10 -5.06451 | opp_overlap 1228358 1228359, overlap 1228359 GATCAGAACCGGGCT CGCCACCAAG CCGGT CTTGGTGCCG TTTTTTAAGCTAATG TERM 1336 1228454 - 1228472 + g 79 -2.4 -5.05505 | overlap 1228455 GAGTGTTTAGGCCTT CGTGAAAT ATT ATTTCGCC TTTTTCGTTTGTAAT TERM 1337 1228930 - 1228918 - R 71 -6.3 -4.3898 | AGTATCCGTACAAAA TGATC GTT GATCA GCCCGATTTGTCTAA Rru_A1036 1229604 - 1228942 - | hypothetical protein TERM 1338 1229670 - 1229633 - R 86 -14.1 -3.48276 | gap 1, overlap 1229634 1229654 TTGTCGGTCAGAGAA CCCGGC-GTCCGCCCCGC CAA ACGGCGCGGACCACCGGA AGGCCATCGCACAAA TERM 1339 1229669 - 1229634 - R 78 -15.4 -2.68823 | gap 1, overlap 1229633 1229654 TGTCGGTCAGAGAAC CCGGC-GTCCGCCCCGC CAA ACGGCGCGGACCACCGG AAGGCCATCGCACAA Rru_A1037 1230767 - 1229625 - | amidohydrolase Rru_A1038 1231844 - 1230813 - | patatin TERM 1340 1231970 - 1231932 - R 100 -9 -5.0538 | opp_overlap 1231935, overlap 1231935 1231960 CTGCACTGCAAAAAA CGACTGGTCGGTAT GGACAGCGATT ATACCGACCAGTTG ATTAGTCGACCGGGC TERM 1341 1231935 - 1231967 + r 81 -13.5 -3.39895 | opp_overlap 1231932 1231935 1231960 CACTGCAAAAAACGA CTGGTCGGTATGGAC AGC GATTATACCGACCAG TTGATTAGTCGACCG Rru_A1039 1232905 - 1232009 - | hypothetical protein TERM 1342 1232794 - 1232774 - G 73 -13.9 -3.14647 | opp_overlap 1232770 ATCGAGCAGACGGAA GCGGTCGGC CTT GCCGTCCGC CCCCTCTTCGGTCCG TERM 1343 1233067 - 1233038 - R 75 -8.5 -4.16943 | gap 1 CGGGAGAGGGGAAAA CGGCGGCGCGCTCA GCC CAAG-GCGCGGCCG GCCTGACGCCGGGGC Rru_A1040 1234149 - 1233049 - | leucine dehydrogenase TERM 1344 1233102 - 1233119 + g 74 -12.7 -3.53012 | CGGCGGCGGGCCGGG GGCTGGC GGCG GCCAGCC TTTCGCGGGCCAGGG TERM 1345 1233691 - 1233656 - G 77 -16.2 -2.52896 | gap 1 TCACGGCCCAAGCGA TGGCGGAC-GGCGGC GCGCATG GCCGCCAGCCCGCCA CGCGCCGTATAGGGC Rru_A1041 1234411 - 1235331 + | LysR family transcriptional regulator TERM 1346 1235468 - 1235495 + F 71 -5.5 -4.30576 | gap 1 GGGTGCTTGCGGCAA GGGCG-GCGCCT CGTTA AGGTGCGCGACC TTTTCATCATCCCCC TERM 1347 1235660 - 1235648 - g 77 -3.3 -4.89477 | overlap 1235650 CCTTGAAGAAGAAAA GGCCA ATA TCGCC AACGATATCAAGGAA Rru_A1042 1235532 - 1235813 + | hypothetical protein TERM 1348 1235824 - 1235847 + T 100 -17.4 -3.53012 | TCTGAGCGCGCATCA CGGGCCGGCC CCTC GGCCGGTCCG TTTCCACCAAACGCC TERM 1349 1235896 - 1235859 - T 100 -25 -3.72576 | gap 1, opp_overlap 1235859 TCCGTTTCCACCAAA CGCCAAGGCCCGCCTCC TATCC GG-GGCGGGCCTTGGCG TTTGGCGCTGACCGA TERM 1350 1235859 - 1235896 + T 100 -26.4 -3.57144 | opp_overlap 1235859 TCCGTTTCCACCAAA CGCCAAGGCCCGCCTC CTATCC GGGGCGGGCCTTGGCG TTTGGCGCTGACCGA TERM 1351 1235959 - 1235915 - T 71 -7.3 -4.18018 | gap 4, overlap 1235921 GGCGCTGACCGAAAA CACCAA-TACCGCCCTGACCGCG AAA CGCGG---GGGCGGTAATCGGCG GTGTCTAACGGAACC rpsU 1236342 - 1236100 - | 30S ribosomal protein S21 Rru_A1044 1236659 - 1237168 + | peptide deformylase TERM 1352 1237556 - 1237590 + G 73 -10.7 -3.74747 | gap 2, overlap 1237562 CGGCTGGAACGCTGG GCCGGCGACCGCGAGGC GGT GCGTCGCGG--GCTGGC TTTGCTCAGCCTTCC Rru_A1045 1237274 - 1237948 + | hypothetical protein TERM 1353 1237969 - 1238001 + T 79 -16.2 -2.71924 | overlap 1237969 TTGGCCTTGGACGAT CCCGGGGGAGGCCG CTTCA CAGCCTCCCCCGAG GTTTAAGGACGGATC TERM 1354 1237969 - 1238002 + T 93 -16 -3.53444 | gap 1, overlap 1237969 TTGGCCTTGGACGAT CC-CGGGGGAGGCCG CTTCA CAGCCTCCCCCGAGG TTTAAGGACGGATCA Rru_A1046 1239919 - 1238015 - | AMP-dependent synthetase and ligase TERM 1355 1239240 - 1239214 - G 78 -10 -4.12475 | opp_overlap 1239229 TATAGAGGATATAAA GCGGATCGGTGG CCG CCACCGGCACGC AGTCATGCGGCGTGG TERM 1356 1240201 - 1240176 - R 100 -14 -4.72272 | gap 1, overlap 1240193 CGCGGTCATGAAAAA CCCCGCCTCCC GAGAA GGG-GGCGGGG CGAGCGCCGCTAAGC TERM 1357 1240629 - 1240645 + r 95 -6.5 -5.52384 | opp_overlap 1240628, overlap 1240628 TGCATGACAAGTCAC CCCTTTC CCT GAGGGGG TTTTTTTAGTGGGGG TERM 1358 1240718 - 1240690 - R 100 -21.8 -4.64861 | opp_overlap 1240716 TTGGCCGAAAACAAA GGCGACCGCCGA GTTTT TCGGCGGTCGCC CCAACGACTCGGGCT Rru_A1047 1241870 - 1240770 - | 6-phosphofructokinase Rru_A1048 1242055 - 1242261 + | hypothetical protein Rru_A1049 1243084 - 1242251 - | GGDEF family protein Rru_A1050 1243289 - 1243792 + | phosphoribosylaminoimidazole carboxylase TERM 1359 1244138 - 1244154 + G 79 -2.2 -5.03747 | opp_overlap 1244153, overlap 1244143 1244153 GAAACCGCCCAGGAC CGCATT CTTGA AAAGCG TTTTTTCAACGATTT Rru_A1051 1243796 - 1244890 + | phosphoribosylaminoimidazole carboxylase ATPase subunit Rru_A1052 1244987 - 1245748 + | response regulator receiver domain-containing protein Rru_A1053 1247328 - 1245766 - | chemotaxis sensory transducer Rru_A1054 1247554 - 1248885 + | hypothetical protein TERM 1360 1248922 - 1248945 + T 100 -10.2 -4.87665 | opp_overlap 1248923, overlap 1248923 TTCGCCCATCAAAAA AGGGGGAGCC TCGC GGTTCCCCCC TTTTTATCGGTCGGC TERM 1361 1248944 - 1248923 - T 100 -11.5 -5.14563 | opp_overlap 1248922 1248923 TCGCCCATCAAAAAA GGGGGAGCC TCGC GGTTCCCCC CTTTTTATCGGTCGG TERM 1362 1248923 - 1248944 + T 86 -13.7 -3.52117 | opp_overlap 1248923, overlap 1248922 TCGCCCATCAAAAAA GGGGGAGCC TCGC GGTTCCCCC CTTTTTATCGGTCGG Rru_A1055 1249592 - 1248972 - | hypothetical protein TERM 1363 1249410 - 1249424 + g 72 -11.4 -3.53224 | opp_overlap 1249418 GCGGGCGATTTCATC GGCCAG AAG CTGGCC TTTGACCACCGGGTC Rru_A1056 1250835 - 1249831 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 1364 1251933 - 1251918 - g 72 -6.8 -4.18018 | gap 1, opp_overlap 1251918, overlap 1251921 TTTGCTCAGCGAAAA GCAGCCG ACG CGGC-GC TTCGTCACCCCCGAG Rru_A1057 1251265 - 1252044 + | 3-hydroxybutyrate dehydrogenase TERM 1365 1252291 - 1252311 + G 72 -8.9 -4.15222 | GCCCTTGATTTCGGG CGCTCCGGT CCG GCCGGATCG TTTCTTGACGGCGGT Rru_A1058 1252054 - 1252509 + | putative thioesterase Rru_A1059 1253496 - 1252513 - | aldo/keto reductase TERM 1366 1252729 - 1252704 - G 72 -8.9 -4.07568 | overlap 1252674 1252709 1252713 GGGGGCGCCCCAAAA GCCAAGCCAGG GCGA CCTGGGCCGGC GTCGCGCCGCGGGCG Rru_A1060 1253602 - 1254537 + | LysR family transcriptional regulator TERM 1367 1254559 - 1254571 + F 89 -4.7 -5.26119 | opp_overlap 1254559, overlap 1254560 TGCATCGGGTACCAA CGCCG AGG CGGCC TTTTCTTTTTCAGCG Rru_A1061 1254632 - 1254847 + | helix-turn-helix protein, CopG TERM 1368 1254993 - 1255003 + G 86 -8.2 -4.83169 | opp_overlap 1254993 CGCCGATCTGATAGA GCCG ACC CGGC TTTTTCTCGACGGCT Rru_A1062 1254841 - 1255206 + | PilT protein-like Rru_A1063 1255244 - 1255588 + | putative transcription regulator protein TERM 1369 1255788 - 1255798 + G 79 -4.6 -4.7254 | GATTTCGCGATGAAT GGCT GCG GGCC TTTTTCGTGGAGGAT TERM 1370 1255960 - 1255934 - g 70 -2.2 -4.60889 | opp_overlap 1255935, overlap 1255935 AATCATTTCGAAAAA CTACATGGCATC CTT GATGGCCTGTAT TCGATTCGCGTCAAC Rru_A1064 1255763 - 1256059 + | plasmid maintenance system killer Rru_A1065 1256071 - 1256376 + | plasmid maintenance system antidote protein TERM 1371 1257266 - 1257243 - g 80 -16.8 -2.78384 | CCCGCCTTGATGACA TGCTGTCGCG GTTG CGCGACAGCA TCCGCGGCGGCGAGC Rru_A1066 1256531 - 1257316 + | ABC transporter component Rru_A1067 1257313 - 1258014 + | cobalamin synthesis protein/P47K Rru_A1068 1258016 - 1259197 + | aminotransferase, class V Rru_A1069 1259241 - 1259966 + | putative Fe-S cluster TERM 1372 1260014 - 1259984 - T 100 -23.4 -5.29846 | AAGCCCAAATAAAAA GGGATGCGGGTCCG TGA CGAACCCGCATCCC CGACATCAAGGGATC Rru_A1070 1260540 - 1260070 - | heat shock protein Hsp20 TERM 1373 1260775 - 1260793 + r 91 -13.2 -3.90112 | opp_overlap 1260769 1260770 1260791 GCGGCCAAAGGCTAT CGCCTTGA GGA TCAAGGCG TTTCCTTGAAAGCGG Rru_A1071 1262828 - 1260786 - | adenylate/guanylate cyclase TERM 1374 1261899 - 1261923 + g 71 -3.3 -4.67038 | CTTCTCGGCGGCTTT GCGCGCTTCGG CCT CTTTCGCGCGC TTTTCCTTTTCGCGC TERM 1375 1261985 - 1262030 + g 78 -10.2 -4.15788 | gap 1 AATCCTGGTTCTCGC GCCGGCGTCGCTCG-GCCTCC TCCTC GGCGGCGCGGGCCTCGGCGGC TTTCTTCCGGGCCTT TERM 1376 1262220 - 1262241 + g 70 -11.6 -3.46509 | overlap 1262213 CATATCGGGGCGCTG GCCGATCG CCTCCT CGATCGGC TTGGTCTTCTTCGGC TERM 1377 1263108 - 1263130 + r 100 -14.8 -5.0133 | opp_overlap 1263108 CCTCAAACGCAAAAA CGGCAACCCC ATG GGGGTCGCCG TTTTTTGACGGGATC TERM 1378 1263130 - 1263108 - R 100 -17 -4.81249 | opp_overlap 1263108 CCTCAAACGCAAAAA CGGCAACCCC ATG GGGGTCGCCG TTTTTTGACGGGATC rpmE 1263387 - 1263169 - | 50S ribosomal protein L31 Rru_A1073 1264625 - 1263498 - | hypothetical protein Rru_A1074 1265969 - 1264641 - | MotA/TolQ/ExbB proton channel family protein Rru_A1075 1267626 - 1266121 - | hypothetical protein TERM 1379 1266566 - 1266603 + g 75 -11.8 -3.67775 | overlap 1266567 GCGGTCTGGGCAGCC GGGGCACTGGCGGCGC GCGGGG GCGCCGCCGGGGCCGG TTCTTCGGTGCGAAT TERM 1380 1266567 - 1266602 + g 75 -15.3 -2.80344 | overlap 1266566 CGGTCTGGGCAGCCG GGGCACTGGCGGCGC GCGGGG GCGCCGCCGGGGCCG GTTCTTCGGTGCGAA Rru_A1076 1268528 - 1267737 - | inositol monophosphatase TERM 1381 1268594 - 1268570 - R 81 -7.7 -4.58395 | overlap 1268572 GTCAGGCGCGAAAAA GGGGCGCGAAA CGG TCACGCGCCGC AAAGGGCGCAAAAAG TERM 1382 1268645 - 1268614 - R 74 -6.6 -4.32046 | gap 2, opp_overlap 1268617 1268635, overlap 1268617 GGCGCAAAAAGGAAA GAACCGGCCAACGC GCGTCG GCGC-GGCCGG-TC TTCGGTGGTCGCGAA TERM 1383 1268643 - 1268617 - R 79 -9.4 -4.26386 | gap 1, opp_overlap 1268617 1268635, overlap 1268614 GCAAAAAGGAAAGAA CCGGCCAACGC GCGTCG GCGC-GGCCGG TCTTCGGTGGTCGCG Rru_A1077 1269233 - 1268670 - | translation elongation factor P (EF-P) TERM 1384 1269069 - 1269082 + g 75 -4.5 -4.65078 | overlap 1269041 CGTATCGGCGGTCCG CCAGC GTTC GTTGG TTTTGTTGCCGCTGT Rru_A1078 1269339 - 1270415 + | tRNA synthetase, class II (D, K and N) Rru_A1079 1272255 - 1270423 - | potassium/proton antiporter TERM 1385 1271881 - 1271842 - G 86 -8.4 -4.72986 | overlap 1271845 GACGCGCAGCAAAAA GAAGACGGCCGCCGCGTC GGTC GATCCGACGACCGCCCCC ATCAACGCCGATTCC TERM 1386 1271878 - 1271845 - G 81 -8.7 -4.47707 | overlap 1271842 GCGCAGCAAAAAGAA GACGGCCGCCGCGTC GGTC GATCCGACGACCGCC CCCATCAACGCCGAT TERM 1387 1272576 - 1272538 - R 100 -18.3 -3.9392 | gap 1, opp_overlap 1272538 1272539 1272540 TTTCAGGCGAAACAA TGGCCCGGAAAGGCGCCT TTTC AGG-GCTTTTCCGGGCCA TTCATGGCAAAGCGG TERM 1388 1272538 - 1272576 + r 95 -20.5 -3.14132 | gap 1, opp_overlap 1272538, overlap 1272539 1272540 TTTCAGGCGAAACAA TGGCCCGGAAAGGCGCCT TTTC AGG-GCTTTTCCGGGCCA TTCATGGCAAAGCGG TERM 1389 1272540 - 1272564 + r 80 -10.7 -4.08692 | opp_overlap 1272538, overlap 1272539 1272538 TCAGGCGAAACAATG GCCCGGAAAGG CGC CTTTTCAGGGC TTTTCCGGGCCATTC Rru_A1080 1273320 - 1272670 - | thiamine-phosphate diphosphorylase TERM 1390 1272786 - 1272776 - G 79 -2.4 -5.04385 | overlap 1272777 CACACGGCCAAAAAA TCCG TGC CGGT TTCCACCAGGGGCGC Rru_A1081 1273898 - 1273377 - | hypothetical protein Rru_A1082 1273936 - 1274196 + | hypothetical protein Rru_A1083 1274272 - 1274625 + | hypothetical protein Rru_A1084 1274874 - 1275626 + | 5-formyltetrahydrofolate cyclo-ligase Rru_A1085 1275623 - 1276441 + | metallophosphoesterase TERM 1391 1276535 - 1276557 + F 84 -10.6 -4.2558 | overlap 1276525 1276525 CCCAGCCCCGGCAGG GGAACCCC TTGTGGC GGGGTTCC TTTTCCTGGGAAGTC Rru_A1086 1276715 - 1277464 + | hypothetical protein ruvC 1277461 - 1277970 + | Holliday junction resolvase Rru_A1088 1277967 - 1278605 + | DNA recombination protein RuvA ruvB 1278609 - 1279661 + | Holliday junction DNA helicase B Rru_A1090 1279658 - 1280107 + | 4-hydroxybenzoyl-CoA thioesterase TERM 1392 1280892 - 1280914 + G 72 -11.9 -3.58343 | overlap 1280880 GTGGCCCCCGGTATC GCCGAGGCG CTGTT CGCCACGGC TTTGGGACTGGTCGC Rru_A1091 1280130 - 1281056 + | MotA/TolQ/ExbB proton channel Rru_A1092 1281084 - 1281584 + | biopolymer transport protein ExbD/TolR TERM 1393 1282245 - 1282227 - g 73 -12.4 -3.41222 | overlap 1282225 GGGCAAGGGCAAACA GGCCGACG CGG CGTCGACC GAGGAGGAGGCGACT Rru_A1093 1281601 - 1282626 + | hypothetical protein TERM 1394 1282839 - 1282858 + F 93 -16.4 -3.5764 | overlap 1282845 CTCGGGTGTTTCCAG GCGGCCCC GCCC GGGGCCGC TTTGCCGGTGCGGTT tolB 1282972 - 1284303 + | translocation protein TolB Rru_A1095 1284456 - 1284941 + | OmpA/MotB TERM 1395 1285046 - 1285100 + F 82 -13.1 -3.65693 | gap 3, opp_overlap 1285035 1285042 1285046, overlap 1285082 1285086 AAAGGCATCAAGGGA GGCGTCGTCTTCCG-CTGTCACCGTC AAAAGG GGC-GTGATGGCCGGAAG-CGACGCC TTTCGCCTGTCTGGT TERM 1396 1285681 - 1285731 + G 91 -12.2 -4.19238 | opp_overlap 1285706, overlap 1285683 CGAGCGCCCGGCCGA CGGCCTCGGCCGGCGCCGGCAAGC AGG GCACTCCGGCCCCGGCCGAAGGGG TTTTGGGCTTCCCCG TERM 1397 1285683 - 1285730 + G 72 -13.2 -3.11222 | gap 1, opp_overlap 1285706, overlap 1285681 AGCGCCCGGCCGACG GCC-TCGGCCGGCGCCGGCAAGC AGG GCACTCCGGCCCCGGCCGAAGGG GTTTTGGGCTTCCCC TERM 1398 1285886 - 1285898 + G 71 -9.1 -3.85817 | opp_overlap 1285886 CCCGGCGGCCGAACA GGCCT TCA AGGCC TTTCTCGACCAGCAT Rru_A1096 1285359 - 1286198 + | hypothetical protein TERM 1399 1286663 - 1286639 - g 70 -11.3 -3.58522 | opp_overlap 1286656 ATGATCAGGCCGAAA CCGTGCTCCAG CGC CTGGGGCGCGG CAGCGGCGCCGACGG TERM 1400 1286712 - 1286733 + G 74 -10.1 -3.87815 | gap 1 CCTGTCGTCGCGGGG CGAGGCGCGG ATC CTGCGCC-CG TTTCTAGAGGTGCCG TERM 1401 1287386 - 1287342 - g 78 -15 -3.28791 | AGCGGGCTGGCAGAA GCTGGC-GCCGGCCCTGGCCGG GGA CCG-CCAAGGCCTGCCGCCACC TATCGCCCTGCCGGC TERM 1402 1287397 - 1287409 + G 86 -4.7 -5.24531 | overlap 1287398 CCACCTATCGCCCTG CCGGC CCT GCCGA TTTTTTATGGCGAGT Rru_A1097 1286212 - 1287600 + | PP-loop protein Rru_A1098 1287740 - 1289662 + | membrane protease FtsH catalytic subunit TERM 1403 1289719 - 1289744 + G 79 -16.2 -3.05384 | overlap 1289722 1289725 CGGTCCCGACCATCG GAAGCCCCGC TTTACC GCGGGGCTTC TTCCATGCGGAGGGG TERM 1404 1289722 - 1289741 + G 77 -12.1 -3.67597 | overlap 1289719 1289725 TCCCGACCATCGGAA GCCCCGC TTTACC GCGGGGC TTCTTCCATGCGGAG TERM 1405 1289827 - 1289875 + G 86 -6.6 -5.00895 | gap 1, overlap 1289828 AAGCCGCCGCCCAAG CCGTGGTCGAAG-GCTTGGCC CTGCCCTT GGCCGGGCGCGCCGACCACGC TTTTTGTCTGATCGC TERM 1406 1290862 - 1290814 - g 70 -11.1 -3.5393 | gap 3, opp_overlap 1290813 ACGACGTGGGCGAAA CCGTTC-AGGCGCTGCGCG-TCGC CGCG GCGATCGAG-AGCGCCTAGAGCGG CTTGCGTGACCCAAA Rru_A1099 1289667 - 1290857 + | dihydropteroate synthase TERM 1407 1291784 - 1291801 + G 73 -11.3 -3.63991 | opp_overlap 1291777 GACGAAAAGGGCGCC CTGGTCG ATGG CGACCAG TTGTTGGCGCTGATC Rru_A1100 1291010 - 1292368 + | phosphoglucosamine mutase TERM 1408 1292418 - 1292373 - T 86 -14.6 -3.40867 | overlap 1292374 CCAGCCAGTAAGCAA GGCGCCCTGGAGGGATGCGG GGTGTA CCGCCTCCCTCCAGGGGGTG CGCTTAAGGCAGGGT TERM 1409 1292417 - 1292374 - T 85 -18.1 -2.64199 | overlap 1292373 CAGCCAGTAAGCAAG GCGCCCTGGAGGGATGCGG GGTGTA CCGCCTCCCTCCAGGGGGT GCGCTTAAGGCAGGG Rru_A1101 1294488 - 1292422 - | hypothetical protein TERM 1410 1293480 - 1293518 + g 72 -8.6 -4.08216 | CCATCGCCTCGTCGG GCGCGGCGGGGGCGGCGG CCA TCGCCATCGGCGTTGCGC TTTTGGCGAAGCTGC TERM 1411 1294633 - 1294663 + H 71 -8.2 -4.14243 | overlap 1294634 CTTTGACCATCGGCA ACGTTCGGAACCCG CTA CCAGTTCCGAACGG TTTTCGGATGCGGTC TERM 1412 1295166 - 1295183 + G 70 -4.1 -4.52589 | overlap 1295172 CCCAATCTGCCCGAG GCCGA GGTGCTGG TCGGC TTTTCTATCGCCGAC Rru_A1102 1294737 - 1295552 + | phosphomethylpyrimidine kinase TERM 1413 1295806 - 1295822 + G 74 -7.9 -4.25104 | overlap 1295808 TTGCGGTCACGCCAC CCTGGCC AGC GGCCATG TTTTGCTGCGCGAAC Rru_A1103 1295549 - 1296382 + | phenazine biosynthesis PhzC/PhzF protein TERM 1414 1296453 - 1296482 + F 78 -9.9 -3.89346 | gap 1, overlap 1296470 AATGGGAGGGGCGCG CCGGG-GGGGCGTT GAC GGCGGCCCGCCCGG TTTCTACAGTCGGGC TERM 1415 1296470 - 1296500 + F 100 -11 -5.22006 | overlap 1296453 GGGGGGGCGTTGACG GCGGCCCGCCCG GTTTCTA CAGTCGGGCCGC TTTTTCTTGTCGTGA Rru_A1104 1296596 - 1297750 + | phosphoserine aminotransferase TERM 1416 1298470 - 1298517 + G 83 -15.4 -3.53444 | gap 1, overlap 1298471 AACAAAAGGATTTCA CCGCCGCCGCCGCCCTGGCCGGT GAC GCCG-CCGGGGCGCTGTCGGCGC TTTCGGGAACGGTCG TERM 1417 1298471 - 1298516 + G 87 -18.9 -2.71924 | gap 1, overlap 1298470 ACAAAAGGATTTCAC CGCCGCCGCCGCCCTGGCCGGT GAC GCCG-CCGGGGCGCTGTCGGCG CTTTCGGGAACGGTC TERM 1418 1298841 - 1298862 + G 75 -12.9 -3.41602 | CTTGATGGCATGGTC CGCCCGGCG CCGG CGCCGCGCG TTCTGGTGGCCTCGA Rru_A1105 1297869 - 1299023 + | tRNA synthetase, class II (G, H, P and S) TERM 1419 1299057 - 1299099 + F 81 -5.5 -4.85599 | gap 1, overlap 1299039 1299058 GGGCAGGGGCCGATC GTCGTGGGTGATCCACGGCC GGCC GCCCG-GGATTTCCCATGAA TTTTTCTCGAATACG Rru_A1106 1299126 - 1300415 + | adenylosuccinate synthetase TERM 1420 1302066 - 1302048 - g 72 -6.7 -4.2679 | opp_overlap 1302065 CAAGGCCGATCAAAA GCAATCG CCCGC CGATCGC CACGTCGTCGCCTTT Rru_A1107 1300534 - 1302567 + | hypothetical protein Rru_A1108 1302568 - 1303155 + | hypothetical protein Rru_A1109 1305169 - 1303469 - | chemotaxis sensory transducer TERM 1421 1304763 - 1304745 - G 95 -7.3 -5.40474 | ATGCTTTCAAAAAAA CCGCCGG TCGCC CCGGTGG TCGTCGCCAGGGAAA TERM 1422 1305335 - 1305303 - R 86 -13.6 -3.53811 | opp_overlap 1305309, overlap 1305309 CCGAGCGTTTTTAAA TATAAAGCCGCTTC GGGAA GAGGCGGCTTTATA AAAAGAGATCCTGTC TERM 1423 1305329 - 1305309 - R 77 -8.2 -4.32857 | opp_overlap 1305309, overlap 1305303 GTTTTTAAATATAAA GCCGCTTC GGGAA GAGGCGGC TTTATAAAAAGAGAT TERM 1424 1305309 - 1305329 + r 78 -10.4 -3.85817 | opp_overlap 1305303 1305309 GTTTTTAAATATAAA GCCGCTTC GGGAA GAGGCGGC TTTATAAAAAGAGAT TERM 1425 1305470 - 1305439 - R 100 -18.1 -4.07568 | GGGCGCCGGCCAAAA CGGTGAGCGGGAA ATCGCG TCCCCGCTCACCG CTCTAAAATCGTGAT TERM 1426 1305579 - 1305543 - R 76 -13.6 -3.02144 | GGATTTGCTCTAACA GGCGACCGCGGCGACG GCGGG CGCCGCCCCGGTCATC GCCCCGTGCATCCAT Rru_A1110 1306436 - 1305537 - | RNA polymerase factor sigma-32 Rru_A1111 1307687 - 1306656 - | ribosomal large subunit pseudouridine synthase D TERM 1427 1306807 - 1306829 + g 74 -5.5 -4.4572 | GTCAGTCGCGCGATC CTCTCGGAT AAATC ACCCGGGAG TTTCTTTGGAATATT TERM 1428 1307961 - 1308009 + G 70 -13.3 -3.06796 | gap 3 CGGACAGATCGCCGG GGGATGGGAGCGCGCGCCCGGC ATGGCCCC GCC-GGCGC-CGCTCC-GTCCC TTCGATACCCTCAGC Rru_A1112 1307770 - 1308183 + | hypothetical protein Rru_A1113 1308173 - 1308628 + | Mov34/MPN/PAD-1 Rru_A1114 1310119 - 1308659 - | major facilitator transporter TERM 1429 1309358 - 1309340 - G 71 -9.5 -3.89346 | overlap 1309341 1309351 TTCCCAGGCGAGAAA GGCGGCA AGCAG CGCCGCC GAAGCGGCGAAGCTG TERM 1430 1309766 - 1309727 - G 79 -10.7 -3.9122 | gap 1 GACCTGGGGAAACAA GATCGCC-CCCGCCGCCC CTTGC AGGAAGCGGGCGACGATC AGGCTCGCCGCATTG TERM 1431 1309879 - 1309840 - G 100 -13.5 -5.0925 | gap 1 GGCCAAAAGCAAAAA GCCGGCGGCGGCCATGGA TGTCG CCCA-GGCGGCCCCCGGC GATCAGCAATACCCC Rru_A1115 1310195 - 1311133 + | XRE family transcriptional regulator TERM 1432 1311249 - 1311238 - f 83 -4.4 -5.10077 | AAATATGGCAAAAAA GAAC GAAC GTTC GTATACCTAACCCAA Rru_A1116 1311278 - 1311832 + | TetR family transcriptional regulator TERM 1433 1312213 - 1312242 + G 79 -16.5 -3.05816 | gap 1 GATCGACGCCCGTCT G-TTCCGCGCTCGC GTC GCGAGCGCGGAGGC TTCGCTGGCGCGTGC Rru_A1117 1312016 - 1313119 + | secretion protein HlyD Rru_A1118 1313128 - 1316286 + | hydrophobe/amphiphile efflux-1 HAE1 TERM 1434 1316284 - 1316333 + T 80 -11.8 -3.76413 | gap 3, opp_overlap 1316296, overlap 1316296 GGGAAGCCCGTGGCC TGAGCTGAA--GAATGTCCCGCCTT CCC AAGGCGGGACATTCCATTCACC-CA TTTCCAGTTTTCCGC TERM 1435 1316296 - 1316320 + T 90 -18.7 -3.17571 | opp_overlap 1316296, overlap 1316284 GCCTGAGCTGAAGAA TGTCCCGCCTT CCC AAGGCGGGACA TTCCATTCACCCATT TERM 1436 1316320 - 1316296 - T 100 -18.7 -3.65046 | opp_overlap 1316296 1316284 GCCTGAGCTGAAGAA TGTCCCGCCTT CCC AAGGCGGGACA TTCCATTCACCCATT Rru_A1119 1317862 - 1316672 - | NnrS TERM 1437 1316898 - 1316842 - G 81 -10.7 -4.12188 | GCAGCAGGGCGAAAA GCGCCGTCGTC-GCCGGGCCGGCCCGC AGCGG GCGG-CCGGTATGGCCGAGGATGGCGC GGGTCATCACCGCCA TERM 1438 1317665 - 1317650 - G 86 -6 -5.06414 | overlap 1317608 1317652 CGCCGTCAACAAAAA GCCGGC CACC GCCGCC CCCGCATAGCCAAAG TERM 1439 1319220 - 1319262 + G 79 -8.3 -4.38116 | gap 1, opp_overlap 1319244, overlap 1319226 CACCCTGGCGGTGGT CGGCCACT-CGGGGGCGGGC AAAA GCACGCTCTCGCGGTTGCTG TTTCGTTTTTATGAC Rru_A1120 1318039 - 1319892 + | ABC transporter, transmembrane region TERM 1440 1323272 - 1323260 - g 88 -10.5 -4.3129 | CATCCAGCATGAAAA GGCCG ATC CGGCC AATCCCACCCATGTC Rru_A1121 1320030 - 1323491 + | pyruvate carboxylase TERM 1441 1323503 - 1323518 + F 95 -11.8 -4.56597 | CTGAGCCTGGGGCAA GGGGGC TTCG GCCCCC TTTTTCCCCCAAGGA TERM 1442 1323555 - 1323566 + G 79 -2.2 -5.08824 | gap 1 GATGTCCGATCACTT CGACG GAA CG-CG TTTTTTCAATCCGGG TERM 1443 1323865 - 1323825 - g 83 -15.9 -3.53012 | GTGGGTCGGGCCAAA GCGGGTGCGCGCCCCGGGC ATC GCCCTGGACGCCCTGCCGC CGATCCATGCCATTT Rru_A1122 1323541 - 1324518 + | Beta-lactamase-like Rru_A1123 1324576 - 1325091 + | Ala-tRNA(Pro) hydrolase TERM 1444 1325103 - 1325132 + G 76 -6.4 -4.49644 | overlap 1325102 1325103 1325104 CTGAGCCTTTCCCAT G-CGGGCCGCGTCT TTCG GGGCG-GGCCCGGC TTTTGCGTTTTTCCT Rru_A1124 1325101 - 1326567 + | D-lactate dehydrogenase (cytochrome) Rru_A1125 1326652 - 1326966 + | XRE family transcriptional regulator Rru_A1126 1327572 - 1328000 + | ISBm1, transposase orfA TERM 1445 1328060 - 1328050 - g 72 -6.8 -4.18018 | overlap 1328051 GGCGTTGATCGAAAA CCTC GGC GAGG GTGACATCCTGCTCG Rru_A1127 1328024 - 1328332 + | ISBm1, transposase orfB TERM 1446 1330044 - 1329996 - g 76 -6.6 -4.56775 | gap 1, overlap 1329997 ATTGCGCCGGAAAAA TGGAAGGGGCAGCCTTCCTCAGA AATG TC-GTGGAGGCCTTCCCCTACCA GATCCACATCGTGCT Rru_A1128 1329614 - 1330456 + | integrase catalytic subunit TERM 1447 1330463 - 1330488 + T 82 -12.5 -3.66378 | gap 1, opp_overlap 1330464, overlap 1330464 TCGTCCTGAAAAAAA AGGGGGCGC-CC CGC GGAGCGCCCCCG TTTCCATCGAATGTG TERM 1448 1330487 - 1330464 - T 100 -17.4 -5.75342 | opp_overlap 1330463 1330464 CGTCCTGAAAAAAAA GGGGGCGCCC CGCG GAGCGCCCCC GTTTCCATCGAATGT TERM 1449 1330464 - 1330487 + T 79 -16 -2.79505 | gap 1, opp_overlap 1330464, overlap 1330463 CGTCCTGAAAAAAAA GGGGGCGC-CC CGC GGAGCGCCCCC GTTTCCATCGAATGT Rru_A1129 1331808 - 1330513 - | ammonium transporter Rru_A1130 1332360 - 1332022 - | nitrogen regulatory protein P-II TERM 1450 1332523 - 1332509 - R 80 -3.4 -5.15969 | opp_overlap 1332509 1332510, overlap 1332510 CCGCAACGCAAAAAA GCCCGA TTT CCGGGA ATTTTTCGGGACGGT TERM 1451 1332677 - 1332644 - R 100 -10.1 -5.60993 | CGGGGCACAAAAAAA CGGCGACCGAACCCT TTTG AGGGAGTGGCCGCCG GGGCAAGTCATTGGC Rru_A1131 1333675 - 1332809 - | branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase TERM 1452 1332986 - 1332976 - G 86 -8.2 -4.82901 | TGTTGGCCAGAAAAA CGCC GTC GGCG GTCAAAAGATCGGCG Rru_A1132 1335096 - 1333672 - | aminodeoxychorismate synthase, subunit I TERM 1453 1334590 - 1334556 - G 79 -12 -3.81339 | overlap 1334526 1334551 CAGGGACAAGGGAAA CCGCGGCCAAGCGCCG TTC CAGGGCTTCGGCGCGG GCCAGGGCGCGGGCG Rru_A1133 1337314 - 1335113 - | excinuclease ABC subunit B TERM 1454 1337304 - 1337272 - G 70 -10.5 -3.65812 | gap 1, opp_overlap 1337297 TGGCCCTTAAGATAA GC-CGCCCGCCCGG GCTTGA CCAGGGGGGCGCGC CGTCCGTCATCGCTC TERM 1455 1337297 - 1337321 + g 70 -2.6 -4.58685 | opp_overlap 1337272 CGGGCTTGACCAGGG GGGCGCGCCG TCCGT CATCGCTCCC TTTTTCGACCCATTT TERM 1456 1337453 - 1337484 + H 100 -9.2 -5.0133 | overlap 1337453 GGGGTTCGCCCCCTA CGACCTCCGGCGCC GCGC GGCGCGGGGGGCGG TTTTTTCGCGCGGTC TERM 1457 1337453 - 1337483 + H 82 -12.5 -3.60316 | gap 1, overlap 1337453 GGGGTTCGCCCCCTA CGACCTCCGGCGCC GCGC GGCGCGGGGGG-CG GTTTTTTCGCGCGGT TERM 1458 1338539 - 1338559 + G 75 -6.8 -4.33997 | TCGGAGGATTACACC CTGTGGGG CGGCT TCCCGCAG TTGTTCTTTTTCATG Rru_A1134 1337522 - 1339018 + | cation transporter TERM 1459 1339329 - 1339314 - g 72 -11.8 -3.51778 | overlap 1339312 CGATCACATCAAACA GGCGGC GATC GCCGCC ATCGAGCGCGGCGAG Rru_A1135 1339162 - 1340364 + | aminotransferase TERM 1460 1340400 - 1340421 + F 100 -15.1 -5.58454 | opp_overlap 1340400 CGGATCTGATGGAAA GGGCGCCCT TCGC GGGGCGCCC TTTTTTTCGTCTGGG TERM 1461 1340421 - 1340400 - f 90 -14.4 -3.65902 | opp_overlap 1340400 CGGATCTGATGGAAA GGGCGCCC TTCGCG GGGCGCCC TTTTTTTCGTCTGGG Rru_A1136 1340976 - 1342007 + | periplasmic binding protein TERM 1462 1342723 - 1342736 + G 75 -9.5 -4.10164 | CGCCTCGCTCGGCAT CCCGG TGCG CCGGG TTTATATCATGATGA Rru_A1137 1342004 - 1343032 + | transport system permease protein Rru_A1138 1343029 - 1343829 + | ABC transporter component Rru_A1139 1343826 - 1344278 + | blue (type 1) copper subtype TERM 1463 1344291 - 1344308 + F 78 -9.8 -3.91028 | overlap 1344291 TGATCGGAGCGGGGA GGGGGG CGTTTC CCCCCC TTATTCCTTTGGCTT Rru_A1140 1344652 - 1346667 + | elongation factor G TERM 1464 1346717 - 1346689 - T 82 -12.3 -3.64703 | overlap 1346690 GCGCCCTCATCCAAA GCGGGAGGCCCCC AAA GCGGGCCTCCCAG TCCGTGATCGGAAGA TERM 1465 1346716 - 1346690 - T 79 -15.8 -2.78679 | overlap 1346689 CGCCCTCATCCAAAG CGGGAGGCCCCC AAA GCGGGCCTCCCA GTCCGTGATCGGAAG Rru_A1141 1347627 - 1346812 - | hypothetical protein TERM 1466 1347645 - 1347635 - R 77 -8.2 -4.34402 | TCTGTCATAGCAAAA CGGG CTC CCCG GGTGTGGTGGTCAGT glyA 1348960 - 1347656 - | serine hydroxymethyltransferase TERM 1467 1348914 - 1348896 - G 74 -10.2 -3.85698 | overlap 1348899 TCGGCGGCGGACAAA CAGGCGGC GTT GACGCCTG CGCAGGGGGCGTTCC Rru_A1143 1350665 - 1349175 - | GntR family transcriptional regulator TERM 1468 1351616 - 1351596 - g 74 -14.7 -3.02511 | CCCATGCCTTCAACA TCGCCGCCA TCA CGGCGGCGA TCGCCACGGGCAGGG Rru_A1144 1350779 - 1352005 + | benzoate membrane transport protein TERM 1469 1352106 - 1352056 - g 71 -12.4 -3.29324 | opp_overlap 1352073 TCGATCCAAAGCCAA GTCGTGCATGGGCATGTCGGCAAC AGC GCCGCCGTCTTGCCGATGCAGGGC CATGGGGTGACCGTC Rru_A1145 1352017 - 1352868 + | pyridoxal kinase Rru_A1146 1352865 - 1354130 + | 5-aminolevulinate synthase TERM 1470 1354617 - 1354658 + G 73 -12.1 -3.40403 | gap 1, opp_overlap 1354617, overlap 1354618 GCCCGCTTGAAGACA TCGAGGCGGTCCG-CGCCCG CGT CGGGCCACGGACCGCCGCCC TTATGATCGAACCCA TERM 1471 1354658 - 1354617 - g 72 -14.3 -3.06696 | gap 1, opp_overlap 1354617 1354618 GCCCGCTTGAAGACA TCGAGGCGGTCCGC-GCCCG CGT CGGGCCACGGACCGCCGCCC TTATGATCGAACCCA TERM 1472 1354618 - 1354657 + G 74 -15.6 -2.64099 | gap 1, opp_overlap 1354617, overlap 1354617 CCCGCTTGAAGACAT CGAGGCGGTCCG-CGCCCG CGT CGGGCCACGGACCGCCGCC CTTATGATCGAACCC Rru_A1147 1354127 - 1355311 + | acetylornithine aminotransferase Rru_A1148 1357784 - 1355394 - | hypothetical protein TERM 1473 1356631 - 1356642 + g 76 -2.2 -4.87665 | CGCCTCGCCTTGAGG GTTG GAAG CAGC TTTTTGTAAGTCCCG Rru_A1149 1359120 - 1357777 - | hypothetical protein TERM 1474 1358499 - 1358520 + g 70 -10.9 -3.53012 | gap 1 CATCCAGGCGCAGGC GGCCGAAGCC ATC GGCTT-GGCC TTTGCCCACAGGAAC Rru_A1150 1360987 - 1359113 - | hypothetical protein TERM 1475 1359435 - 1359425 - G 75 -4.6 -4.62069 | CTGGGAGGCGAAAAA GCCC TTG AGGC GGGCGCCGGGGACAT TERM 1476 1360143 - 1360162 + g 71 -12.8 -3.28712 | TCTCCGCCAATGTCG GGCGCGTC TTCC GGCGCGCC TTGTCCAAGGGCCAG TERM 1477 1360700 - 1360746 + g 100 -18.1 -4.07568 | gap 2, opp_overlap 1360693 1360696 GGTGAAATGGATGCG GCG-CCGGGCGGGC-AGGTTGGC CGC GCCAACTTCGTCCTCCCGGGCGC TTTTGCGGCCGAAGA TERM 1478 1360894 - 1360861 - G 74 -12.3 -3.61398 | gap 1 GGTCGCCGGGAATAA GCGGGCGCCCCGC-CG GAT CGCGCAGGGCGCTGGC GTCCAGTCCCAAGGC Rru_A1151 1362612 - 1360987 - | hypothetical protein Rru_A1152 1363687 - 1362782 - | hypothetical protein TERM 1479 1363817 - 1363829 + r 100 -9.1 -5.09225 | opp_overlap 1363817 1363816 TCAAAGGAGAGAAAG GGGGT CTG ACCCC TTTTTTACATCCCCT TERM 1480 1364267 - 1364319 + r 73 -10.6 -3.5936 | overlap 1364314 TTCAGTCCCCTCGAT GGCGGGG-CATAGGGTGCGAGGACCA GCT TGTTCTTCGC-CCCGATGATCCCGAC TTTCGCGGGTTTCAG TERM 1481 1364351 - 1364389 + r 76 -10.3 -3.72695 | gap 2, overlap 1364369 CCCCTCGATGGCGGG GCATAGGGTGCGAGACGTC CGG GGCG-CTCGCGCCC-AGGC TTTCCTGGAAGGGGT TERM 1482 1364531 - 1364547 + r 74 -6.6 -4.29656 | opp_overlap 1364531 1364530, overlap 1364518 AGGGGGCGAAAAGAC CCTTCT TAAGC AGAAGG TTTTCACATTTTATA Rru_A1153 1365022 - 1364648 - | CRISPR-associated Cas2 family protein Rru_A1154 1366166 - 1365051 - | hypothetical protein TERM 1483 1367022 - 1366998 - H 100 -17.9 -3.83844 | opp_overlap 1367000 TTTAGGAAGTAAGAA GAGCCCCCCTC TGG GAGGGGAGCTC TCTGGGCTACAACGT TERM 1484 1367000 - 1367020 + H 70 -12.5 -2.89564 | opp_overlap 1366998 TAGGAAGTAAGAAGA GCCCCCCTC TGG GAGGGGAGC TCTCTGGGCTACAAC TERM 1485 1367112 - 1367080 - H 71 -9.7 -3.78034 | opp_overlap 1367079 1367077 1367076, overlap 1367088 GAGCCAGATCAAGAA CGTAAGAAGGCGACG CCA CGTCGCCCGCTGTCG ATCATTCATTACCGT TERM 1486 1367104 - 1367088 - H 91 -13.7 -3.77953 | opp_overlap 1367079 1367077 1367076, overlap 1367080 TCAAGAACGTAAGAA GGCGACG CCA CGTCGCC CGCTGTCGATCATTC TERM 1487 1368011 - 1368023 + H 82 -9.1 -4.37886 | opp_overlap 1368011 CGGTGCCCCATAAAA GGGGT CTG ACCCC TTTTATCCCCAATCC TERM 1488 1368023 - 1368011 - H 82 -9.1 -4.36914 | opp_overlap 1368011 CGGTGCCCCATAAAA GGGGT CTG ACCCC TTTTATCCCCAATCC TERM 1489 1368165 - 1368179 + H 71 -6.4 -4.25104 | GGCGTTGGTTCTAAG GAAGGG GAT CCTTTC TTTTCGTGCGGGAGC Rru_A1155 1368444 - 1370153 + | potassium-transporting ATPase subunit A TERM 1490 1371453 - 1371439 - g 83 -12.8 -4.08064 | AACGCGTCGCCAAAA GCGGCG GCA CGCCGC TGGTCGTCGCCCGCG Rru_A1156 1370163 - 1372211 + | potassium-translocating P-type ATPase B subunit Rru_A1157 1372222 - 1372803 + | potassium-transporting ATPase TERM 1491 1372820 - 1372870 + F 86 -13.3 -3.55444 | overlap 1372822 1372822 GGTTTGATCTGGAGT TAG-GTCCGGCTCGGGGGGAGGGGG ACG CCCTTTCCGCCCGGGCCG-ACGCTC TTTCGAGGATACCCA TERM 1492 1372822 - 1372868 + F 89 -15.9 -3.35597 | overlap 1372820 1372822 TTTGATCTGGAGTTA G-GTCCGGCTCGGGGGGAGGGGG ACG CCCTTTCCGCCCGGGCCG-ACGC TCTTTCGAGGATACC TERM 1493 1372822 - 1372867 + F 78 -16.1 -2.61144 | gap 1, overlap 1372822 1372820 TTTGATCTGGAGTTA GGTCCGGCTCGGGGGGAGGGGG ACG CCCTTTCCGCCCGGGCCG-ACG CTCTTTCGAGGATAC Rru_A1158 1372885 - 1375578 + | osmosensitive K+ channel Signal transduction histidine kinase TERM 1494 1375771 - 1375812 + G 70 -10.1 -3.65902 | overlap 1375775 ATGGCCAGGACGCCA TCAGCATGATCCGCACGGC CAGC GCCGTGCCGATCATCGTGC TTTCGGTGCGCTCGG TERM 1495 1375775 - 1375809 + G 71 -13.7 -2.94322 | gap 1, overlap 1375771 CCAGGACGCCATCAG C-ATGATCCGCACGGC CAGC GCCGTGCCGATCATCG TGCTTTCGGTGCGCT Rru_A1159 1375578 - 1376270 + | two component transcriptional regulator Rru_A1160 1377988 - 1376309 - | chemotaxis sensory transducer TERM 1496 1377480 - 1377443 - G 73 -4.1 -4.67982 | gap 1, overlap 1377444 1377445 1377467 GGCGATGGAATAAAA GGCGTGATCGACATCGTC GAT GAAGATGCCGGTCAC-CA GAACCCAGTTCCAGG TERM 1497 1378306 - 1378322 + H 78 -4.3 -4.82678 | opp_overlap 1378306 GACCGGGGAAAGAAG CCCTTGG GAT CAGAGGG TTTTGCTTTTTCTCA Rru_A1161 1378441 - 1379526 + | Ni-Fe hydrogenase, small subunit Rru_A1162 1379541 - 1381331 + | nickel-dependent hydrogenase, large subunit Rru_A1163 1381364 - 1382083 + | nickel-dependent hydrogenase b-type cytochrome subunit TERM 1498 1382290 - 1382308 + G 75 -4.4 -4.57569 | overlap 1382285 1382294 GTGGGCGCCATCGCC CGGGCGGC GCG GCTGATCG TTTTTGACGCCATCG Rru_A1164 1382080 - 1382676 + | HyaD peptidase Rru_A1165 1382694 - 1383065 + | hydrogenase expression/formation protein (HUPF/HYPC) TERM 1499 1383800 - 1383764 - g 74 -12.3 -3.53811 | gap 1 TGCATGGCCTTGAAA TCGGCGATGTGCCCGC CGCCGT GCGCGC-CACCGCCGA GGATTGCGGCGACTC Rru_A1166 1383082 - 1383858 + | hydrogenase expression/formation protein hupH Rru_A1167 1383855 - 1385075 + | putative hydrogenase expression/formation protein HupK Rru_A1168 1385068 - 1385409 + | hydrogenase expression/synthesis, HypA Rru_A1169 1385409 - 1386215 + | hydrogenase accessory protein HypB TERM 1500 1386429 - 1386447 + G 75 -4.5 -4.66609 | gap 1, overlap 1386426 GTGCGATCAGACCCT GGCCGGCG GCGG CGT-GGCC TTTTTGCGTGGCGTG TERM 1501 1386988 - 1386969 - g 100 -12.1 -4.56597 | GTTCGGCTGCAAAAA GGGCGCC TATACC GGCGCCC ATGAGGATCGGGTCG TERM 1502 1387467 - 1387503 + G 77 -15.7 -3.05596 | GCTGACCGAGGATCT GGCCTCGCCCAAGGTCG GAG CGGCCAGGGCCGAGGCC TTGGGTGGCGGGGTG Rru_A1170 1386259 - 1387704 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1503 1387795 - 1387815 + F 70 -3.9 -4.62069 | opp_overlap 1387797, overlap 1387800 TAGACAATATAGACA AACAAGGGC GCG GCCCTTATG TTTTTCGCGTCGACG TERM 1504 1387813 - 1387797 - f 79 -8.7 -4.22949 | opp_overlap 1387795 1387800 GACAATATAGACAAA CAAGGGC GCG GCCCTTA TGTTTTTCGCGTCGA TERM 1505 1387800 - 1387810 + F 71 -8.2 -4.08349 | opp_overlap 1387797, overlap 1387795 AATATAGACAAACAA GGGC GCG GCCC TTATGTTTTTCGCGT TERM 1506 1388139 - 1388120 - f 90 -15 -3.54424 | opp_overlap 1388137, overlap 1388132 TCTGACGGCCTGAAA CGCCGAGG GAAA CCTCGGCG AGGCTGGAGAGGGGC TERM 1507 1388137 - 1388182 + F 86 -14 -3.53224 | opp_overlap 1388120 1388132 CCGAGGGAAACCTCG GCGAGGCTGGAGAGGGGC GCTGGTCACA GCCCTTCTCCAGCCGGGC TTTCCCCACCAGATC Rru_A1171 1388326 - 1388772 + | BadM/Rrf2 family transcriptional regulator Rru_A1172 1389233 - 1388775 - | AsnC family transcriptional regulator Rru_A1173 1390567 - 1389230 - | TPR repeat-containing protein Rru_A1174 1390698 - 1391042 + | endoribonuclease L-PSP TERM 1508 1391052 - 1391079 + T 100 -18.4 -4.72272 | opp_overlap 1391052 CGCTAATCATGGAAA CGGCCGGACCGC TTGC GCGATCCGGCCG TTTTTCGTCACGGCG TERM 1509 1391079 - 1391052 - T 100 -20.6 -3.71527 | opp_overlap 1391052 CGCTAATCATGGAAA CGGCCGGACCGC TTGC GCGATCCGGCCG TTTTTCGTCACGGCG TERM 1510 1391239 - 1391267 + T 95 -16.1 -3.86202 | opp_overlap 1391236 1391235 TCTAGATCAAAGTGT CCGCGTTAAAGAG TTC CCCTTTAACGCGG TTTGATCTAGTGGCG Rru_A1175 1391471 - 1391274 - | CsbD-like TERM 1511 1391634 - 1391646 + H 82 -9.1 -4.36914 | TCGGGGGCGGGGGAG GCGCA TTT TGCGC TTTTCTCCCCCCGCC TERM 1512 1392184 - 1392234 + G 73 -13.2 -3.22777 | gap 2, overlap 1392177 1392182 1392204 GCCCACTCGGCCTTC GCCCTCTGTC-GGCCGCCGG-GGC ATCAC GCCGCCCGCGCCCTGGCGGGGGGC TATTGCTATCTGAAC TERM 1513 1392291 - 1392252 - g 73 -10.6 -3.65046 | gap 1, opp_overlap 1392257 1392260 TTGCTATCTGAACAA CGCCGCCATCGCCGCCCAG ACC CTGCGCGACCAGGG-GGCG GGGCGGGTGGCGATC Rru_A1176 1391734 - 1392762 + | histone deacetylase superfamily protein TERM 1514 1393133 - 1393148 + G 70 -6.1 -4.1822 | GGATCTTGCCATTCT CGGAG ACCTCG CTCCG TTTATTCGCGTAGAA Rru_A1177 1392996 - 1394405 + | chemotaxis sensory transducer TERM 1515 1394578 - 1394557 - f 100 -12.9 -4.49958 | ACGCCACCAAACAAA CCCGCAGCC ATTG GGCGGCGGG CGGTGGGGCTGTGTC TERM 1516 1394664 - 1394627 - f 100 -8.4 -5.33848 | gap 1, opp_overlap 1394659, overlap 1394628 ACCATAACTAAAAAA CCCCACGGC-CCATCCG ACAGG CGGATGGCATCGTGGGC AGACTCCTCTCCCGC TERM 1517 1394663 - 1394628 - f 80 -11.9 -3.78682 | gap 1, opp_overlap 1394659, overlap 1394627 CCATAACTAAAAAAC CCCACGGC-CCATCCG ACAGG CGGATGGCATCGTGGG CAGACTCCTCTCCCG TERM 1518 1394796 - 1394817 + G 77 -7.9 -4.34402 | opp_overlap 1394810 GGGCGCGATCCCGTG GCCCTTGGC GAAA GCCAGGAGC TTTTCCTGTGGCGCG TERM 1519 1395011 - 1395042 + G 89 -15 -4.11216 | GCTGGTTCATGCCCT GGCGCGGCGGGCCG AGGA CGGGCCGCTGCGGC TTTTCGAACTGGGCG Rru_A1178 1394721 - 1395884 + | anticodon-binding Rru_A1179 1395992 - 1396756 + | DeoR family transcriptional regulator TERM 1520 1397525 - 1397537 + G 77 -6.9 -4.56597 | overlap 1397514 1397526 CGTTTTCGGCGGCGA TGGCC GTC GGCCG TTTTTCGGGCGACGC TERM 1521 1397586 - 1397615 + G 72 -11.4 -3.53091 | gap 1 CTCGGTGGTTCTGAC CCGG-GGCGGCGG AGTGA TCGCCGCCGTCGG TTTGGGGGCGGGGCT Rru_A1180 1396753 - 1397934 + | major facilitator transporter Rru_A1181 1399554 - 1398034 - | signal recognition particle-docking protein FtsY TERM 1522 1398304 - 1398328 + g 81 -5.6 -4.7629 | overlap 1398306 GGGAACCGCCGGATC GATCTTGCGC AGCAC GCGCACGACC TTTTTCAGTTCCTCC TERM 1523 1398531 - 1398557 + g 77 -4.2 -4.81212 | overlap 1398502 1398532 CGGCGGCGGCGCGGA AGGTGTCGCCGG CGG CCAGCAGCACCC TTTTGTTCTCGTGCA TERM 1524 1399499 - 1399519 + g 73 -9 -3.96068 | gap 1, overlap 1399499 CTTTCGAGGGACGTC GGG-ACCGC CACG GCGGTGCCC TTCTTCTTCCGCTGA Rru_A1182 1400876 - 1399551 - | MiaB-like tRNA modifying enzyme Rru_A1183 1401715 - 1400873 - | diaminopimelate epimerase TERM 1525 1401927 - 1401946 + H 80 -3.5 -5.10461 | gap 1, overlap 1401933 1401941 TTGCCGATCATCTCC CCTGCGCC GCCAA GGC-CGGG TTTTTCTTGACTCGG TERM 1526 1402063 - 1402098 + H 72 -12.6 -3.00525 | gap 1, opp_overlap 1402062, overlap 1402058 1402065 AATGCCTCCAAGGAG GT-CCGCCAGTCCGCGA GCA TCGCGCACTGGCGATAC TGTCGTTTGGCCGAA TERM 1527 1402065 - 1402095 + H 79 -15.4 -2.7314 | opp_overlap 1402062, overlap 1402063 1402058 TGCCTCCAAGGAGGT CCGCCAGTCCGCGA GCA TCGCGCACTGGCGA TACTGTCGTTTGGCC TERM 1528 1402917 - 1402905 - g 72 -4.8 -4.45664 | overlap 1402906 GGAATTCAACGAAAA GGTC GGCGT GACC GGCATCGTGCTGACC Rru_A1184 1402159 - 1403673 + | signal recognition particle subunit FFH/SRP54 (srp54) TERM 1529 1404117 - 1404084 - g 80 -9.3 -4.26076 | opp_overlap 1404085 1404114 CGAGGCCGAGGAAAA GGCCCGTGCCGCCGC CGAA GCCGCGGCGAGCGCC GAAGGCTGATGTCTT rpsP 1403752 - 1404126 + | 30S ribosomal protein S16 Rru_A1186 1404248 - 1404853 + | 16S rRNA processing protein RimM Rru_A1187 1404850 - 1405569 + | tRNA (Guanine37-N(1)-) methyltransferase rplS 1405566 - 1406057 + | 50S ribosomal protein L19 TERM 1530 1406110 - 1406138 + F 91 -13.2 -3.77489 | gap 2 CGCCGGGGTTTTCCC GGCGG-CAG-CCCC GGC GGGGACTGACCGCC TTTCCGTCTTGGATT TERM 1531 1406601 - 1406613 + G 70 -10.5 -3.66356 | ATACCTCGACCCATG GCGCC TTC GGCGC TTTGGCCTTCGGGAT Rru_A1189 1406192 - 1407610 + | isopropylmalate isomerase large subunit leuD 1407685 - 1408308 + | isopropylmalate isomerase small subunit TERM 1532 1408319 - 1408340 + F 100 -15.1 -4.74132 | TCTGATCCGTTCAAG GGGCGCGCC GCCG GGTGCGCCC TTTTTCATACCGTCT Rru_A1191 1408395 - 1409507 + | 3-isopropylmalate dehydrogenase TERM 1533 1409569 - 1409531 - T 100 -21.1 -4.07568 | gap 1, opp_overlap 1409531 1409533, overlap 1409533 TTTCCGCTCCGAAAA CA-CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTGGTG TTTCGGAAGCAAATC TERM 1534 1409531 - 1409569 + T 100 -23.3 -3.53224 | gap 1, opp_overlap 1409531 1409533, overlap 1409533 TTTCCGCTCCGAAAA CA-CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTGGTG TTTCGGAAGCAAATC TERM 1535 1409533 - 1409566 + T 100 -26.1 -2.60496 | opp_overlap 1409533 1409531, overlap 1409531 TCCGCTCCGAAAACA CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTG GTGTTTCGGAAGCAA TERM 1536 1409566 - 1409533 - T 100 -23.9 -3.63744 | opp_overlap 1409531 1409533, overlap 1409531 TCCGCTCCGAAAACA CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTG GTGTTTCGGAAGCAA Rru_A1192 1410206 - 1409640 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 1537 1410120 - 1410075 - G 88 -14.5 -3.93236 | opp_overlap 1410090 GAGGAAGTCGATAAA CGGCCAAGCGGCCAGGGCCGC CCCG GCGGCGCTGACCGCCAGGGTG CCGTAAATTAGGAAG Rru_A1193 1410705 - 1410283 - | dinitrogenase iron-molybdenum cofactor biosynthesis TERM 1538 1410730 - 1410756 + r 93 -15.9 -3.53012 | overlap 1410731 CCTTTTCGTTATCGG TCGGCGACGAG GGCGG CTCGTCGCCGG TTTGGCGGGCCAAGG TERM 1539 1410731 - 1410755 + r 84 -17.2 -2.71712 | overlap 1410730 CTTTTCGTTATCGGT CGGCGACGAG GGCGG CTCGTCGCCG GTTTGGCGGGCCAAG Rru_A1194 1411138 - 1410707 - | hypothetical protein TERM 1540 1411305 - 1411279 - H 100 -14.4 -5.21709 | TTGGACATGAAAAAA CCGGGCATCGAC GCT ATCGGTGCCCGG TGAAGTAGACCACAT TERM 1541 1411489 - 1411514 + H 77 -11.1 -3.61715 | overlap 1411470 1411490 GATGTTTCGTCATCG GCCTTGTGGCG CTCT CGCCACAGGGG TTCTTAAACGGGATA TERM 1542 1411490 - 1411513 + H 77 -14.6 -2.76815 | overlap 1411470 1411489 ATGTTTCGTCATCGG CCTTGTGGCG CTCT CGCCACAGGG GTTCTTAAACGGGAT TERM 1543 1411623 - 1411639 + H 83 -2.1 -5.22039 | opp_overlap 1411623 1411625, overlap 1411625 TCGCACTTGCGAAAA GAGGCTC GGC GAACCAC TTTTTTAGATTTCAC TERM 1544 1411853 - 1411821 - H 80 -10.6 -4.04206 | overlap 1411826 CCACTCGGACAGAAA CGAAAGGG-CCGTGCC ATC GGC-CGGACCCTCCCG ACACCGGGAGGTCCC TERM 1545 1411847 - 1411826 - H 75 -7.9 -4.18042 | gap 1, overlap 1411821 CGGACAGAAACGAAA GGGCCGTGCC ATC GGC-CGGACC CTCCCGACACCGGGA Rru_A1195 1411873 - 1412535 + | cell wall hydrolase, SleB Rru_A1196 1412623 - 1413660 + | aspartate-semialdehyde dehydrogenase TERM 1546 1413683 - 1413718 + T 100 -15.5 -5.055 | opp_overlap 1413683 GACCGGGTCCCAAAA CGCCCCCTTTCCG CCGTTTCAAT CGGGAAGGGGGCG TTTTTTCGCGCTTAC TERM 1547 1413718 - 1413683 - T 95 -14 -4.07885 | gap 1, opp_overlap 1413683 GACCGGGTCCCAAAA CGCCCCCTTTCCG-CCG TTT CAATCGGGAAGGGGGCG TTTTTTCGCGCTTAC Rru_A1197 1415796 - 1413730 - | chemotaxis sensory transducer TERM 1548 1414551 - 1414568 + g 88 -9.9 -4.37658 | opp_overlap 1414549 TCGAGCCGACGAACT CCGAAGT GACG ACTTCGG TTTTCTGGCGGCGTT Rru_A1198 1416574 - 1415969 - | lysine exporter protein LysE/YggA TERM 1549 1416096 - 1416066 - G 70 -11.1 -3.54129 | gap 1 CAGAGCGGGGTGAAA TGGCTGCGTACGGC GCCG GCCGC-CGCCGCCA GGGTCGCCCACCACA TERM 1550 1416710 - 1416685 - R 74 -3.2 -4.86731 | gap 1, opp_overlap 1416665, overlap 1416686 CGGGGGCAAATAAAA CCGGCCGGCTT TCTTC ATGCCAGC-GG CGCGATCGGCACGGG Rru_A1199 1417574 - 1416699 - | pyridoxal kinase TERM 1551 1417188 - 1417157 - G 91 -13.6 -4.25104 | overlap 1417158 1417176 1417178 CGTTGGGCATCAAAA TGTCGGCGCGCGGC ACCA ACAGCGCGCCGACC CGCCCGGGCAGGGCG TERM 1552 1417187 - 1417158 - G 84 -17.1 -3.14848 | overlap 1417157 1417176 1417178 GTTGGGCATCAAAAT GTCGGCGCGCGGC ACCA ACAGCGCGCCGAC CCGCCCGGGCAGGGC TERM 1553 1417905 - 1417890 - g 78 -10.4 -4.07568 | overlap 1417874 CCGGGCCCTTGAAAA GGCCAG GACC CTGGCC GCCGACGGGCTGATC TERM 1554 1418695 - 1418673 - g 75 -13.4 -3.4072 | CACGCTCGACGAGAA GATCGCCGCC CTT GGCGGGGATC TGGCGCAGGACCGGG Rru_A1200 1417819 - 1418730 + | citrate lyase Rru_A1201 1418730 - 1419791 + | MaoC-like dehydratase TERM 1555 1420141 - 1420160 + G 80 -9.2 -4.19817 | CTGTGGATCGTCGCC GCCGGCTC TGGC GAGCAGGC TTTTACCTCGGTCCA TERM 1556 1420298 - 1420342 + G 71 -15 -2.65264 | opp_overlap 1420313 TCGGCTTTGATATGC CGA-CGCTGCGCAAGACGGGGG CCG CCGCCGTCG-GCGCGGCGATCG TCCTGTCGCTACTGG Rru_A1202 1419991 - 1420389 + | succinate dehydrogenase subunit C Rru_A1203 1420403 - 1420789 + | succinate dehydrogenase subunit D sdhA 1420795 - 1422579 + | succinate dehydrogenase flavoprotein subunit sdhB 1422608 - 1423390 + | succinate dehydrogenase iron-sulfur subunit TERM 1557 1423420 - 1423443 + T 100 -13.8 -4.54727 | opp_overlap 1423416, overlap 1423428 GCGCATGAAAACCGG GGGCCGTTCC GCAA GGGGCGGCCC TTTTGGTTTGGGCGA TERM 1558 1423516 - 1423472 - T 78 -15.7 -2.55551 | opp_overlap 1423479, overlap 1423483 GACAAGGGGAAGCCA CGGCCAATCTAGCGCGCTCTG GTT CAGAGCGCGCCGGATTTGCTA GAGCGGCGGCAAGAT TERM 1559 1423479 - 1423509 + T 100 -17.6 -3.72576 | opp_overlap 1423472 1423483 GGAAGCCACGGCCAA TCTAGCGCGCTCTG GTT CAGAGCGCGCCGGA TTTGCTAGAGCGGCG TERM 1560 1423505 - 1423483 - T 88 -19.2 -2.53263 | opp_overlap 1423479, overlap 1423472 GCCACGGCCAATCTA GCGCGCTCTG GTT CAGAGCGCGC CGGATTTGCTAGAGC Rru_A1206 1424092 - 1423514 - | hypothetical protein TERM 1561 1424154 - 1424168 + H 77 -8.5 -4.30719 | GATAGACCTCCCTTT GGCCG GTTTG CGGCC TTTGTTGTACCCGCC Rru_A1207 1424333 - 1425262 + | exopolyphosphatase-related protein TERM 1562 1425475 - 1425486 + G 72 -7.2 -4.27886 | GCGTCGCCCCCGCCG GCCC CAAG GGGC TTTATATCTTTGGCG TERM 1563 1426047 - 1426033 - g 71 -9.2 -3.83026 | TGGCCGGAGAGGAAA CCCCGG CCC CCGAGG TGGTCACGGTCCATG TERM 1564 1426301 - 1426314 + G 71 -9.5 -3.88291 | CTGTTCGGCCGAGGC GCCGC CCCA GCGGC TTTATGACGATGGTC Rru_A1208 1425264 - 1426412 + | AFG1-like ATPase Rru_A1209 1427673 - 1426423 - | chromate transporter TERM 1565 1426715 - 1426701 - G 85 -10 -4.25283 | AGCCGGGCAGGAAAA TCGCCA GGA TGGCGA CGCCGGCGTAGCCCA TERM 1566 1427406 - 1427387 - G 82 -12.8 -3.95986 | GTGAAGCCAAGGAAA GCGGCCAG CCCC CCGGCCGC TCCCGCCCGCCGCAG TERM 1567 1427628 - 1427607 - G 78 -6.5 -4.59853 | gap 1, overlap 1427596 1427609 GGAAGGCGCCAAAAA CGCCAAGCGC CCG GCGC-CAGCG GGGCGGGGAGGCGGC TERM 1568 1427713 - 1427681 - H 73 -9.9 -3.57144 | gap 1, opp_overlap 1427647 1427681 1427680 1427681 GGTGTCATCGCCAAA GCCTGCCTGCCCGC GCCTTT GCGGGCAAG-AGAC GCTTTTGTGAGCCCT TERM 1569 1428852 - 1428840 - g 70 -6.2 -4.2679 | overlap 1428828 1428823 GAACGCCGACGAAAA GGCG GCGTT CGCC AAATCCGTCGACAGC Rru_A1210 1427956 - 1428912 + | malate dehydrogenase TERM 1570 1429144 - 1429194 + G 75 -11.7 -3.63744 | gap 1, opp_overlap 1429143 1429144 1429161, overlap 1429143 GTCACTTCAAGGAAC CCTCGGCCGGCGACAAAGGCGGCG TGCG CGTCGTCAA-GTCGACGGACGAGG TGTTTTCCAACGCCA Rru_A1211 1428960 - 1430159 + | succinyl-CoA synthetase (ADP-forming) beta subunit TERM 1571 1430857 - 1430845 - g 85 -6.2 -4.87626 | opp_overlap 1430845, overlap 1430847 CTCCAAGATCAAAAA GCCG ATGTG CGGC TTCATCGCCGGGGTC Rru_A1212 1430159 - 1431037 + | succinyl-CoA synthetase subunit alpha TERM 1572 1431045 - 1431085 + F 90 -14.7 -3.53012 | overlap 1431048 1431051 CCGCCTGACGCGTAA TGCGAGCCCCCCCAGGAAA ACC TTTCCCGGGGGGGTTCCTG TTTGGGGGCGGGGCG TERM 1573 1431048 - 1431082 + F 95 -20.8 -2.60496 | overlap 1431045 1431051 CCTGACGCGTAATGC GAGCCCCCCCAGGAAA ACC TTTCCCGGGGGGGTTC CTGTTTGGGGGCGGG TERM 1574 1431051 - 1431079 + F 100 -18.9 -3.45571 | overlap 1431048 1431045 GACGCGTAATGCGAG CCCCCCCAGGAAA ACC TTTCCCGGGGGGG TTCCTGTTTGGGGGC TERM 1575 1431193 - 1431180 - f 74 -3.1 -4.86862 | gap 1 GGTAAAAAACGAAAA CAGCGC CTA GCG-TG GAGCCGATGGCAGGC TERM 1576 1431279 - 1431292 + G 75 -6.7 -4.36914 | ACGGGAATGGGTGAC GACGT GGAA ACGTC TTTTCTGACCGGAGC TERM 1577 1431363 - 1431383 + G 81 -7.5 -4.58283 | overlap 1431365 GCCGATCCGTCCTCC GTCGATCCA AGC TGGGTCGCC TTTTTCGGCGAATTG TERM 1578 1431528 - 1431518 - g 83 -8.2 -4.58283 | overlap 1431519 CAAGGCCGGGAAAAA CGGC AAG GCCG CCGCCGCTCCGGTCC TERM 1579 1431891 - 1431880 - g 83 -2.2 -5.14965 | ATCCCGAGCAAAAAA GCTG GATC CAAC GCCGCATCGAGGGCG TERM 1580 1432426 - 1432456 + G 72 -11.8 -3.59262 | overlap 1432428 TCCACGGCGACGCCG CCTTCGCCGGCCAG GGG CTGGTCGCCGAATG TTTCGGCCTGTCCCA TERM 1581 1432428 - 1432454 + G 75 -13 -3.37487 | overlap 1432426 CACGGCGACGCCGCC TTCGCCGGCCAG GGG CTGGTCGCCGAA TGTTTCGGCCTGTCC TERM 1582 1433125 - 1433161 + G 78 -14.4 -3.55801 | gap 1, opp_overlap 1433123 1433122 AGATGCTGGAAACCG GCCAGGGCATCGACTGG GCGA CC-GCCGAGGCCCTGGC TTTCGGCACCTTGCT kgd 1431270 - 1434233 + | alpha-ketoglutarate decarboxylase TERM 1583 1434908 - 1434896 - g 74 -7.7 -4.25104 | TCCGCGCGAGGAAAA GGTCA AGA TGACC CGCTTGCGTCGGCGC Rru_A1214 1434288 - 1435583 + | 2-oxoglutarate dehydrogenase E2 component Rru_A1215 1435699 - 1437099 + | dihydrolipoamide dehydrogenase TERM 1584 1437121 - 1437164 + T 100 -16.6 -4.16016 | opp_overlap 1437126, overlap 1437123 1437125 1437126 GGCCAGCAGGCATAA AAAAACGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCGCTGTG TTTCTTGGCGGGTCG TERM 1585 1437123 - 1437162 + T 100 -19.2 -3.67877 | opp_overlap 1437126, overlap 1437121 1437125 1437126 CCAGCAGGCATAAAA AAACGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCGCTG TGTTTCTTGGCGGGT TERM 1586 1437125 - 1437160 + T 100 -21.8 -3.41738 | opp_overlap 1437126, overlap 1437123 1437121 1437126 AGCAGGCATAAAAAA ACGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCGC TGTGTTTCTTGGCGG TERM 1587 1437159 - 1437126 - T 100 -20.9 -5.64274 | opp_overlap 1437126 1437125 1437123 1437121 GCAGGCATAAAAAAA CGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCG CTGTGTTTCTTGGCG TERM 1588 1437126 - 1437159 + T 100 -25.3 -2.64561 | opp_overlap 1437126, overlap 1437125 1437123 1437121 GCAGGCATAAAAAAA CGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCG CTGTGTTTCTTGGCG Rru_A1216 1437679 - 1437194 - | hypothetical protein pspB 1437924 - 1437676 - | phage shock protein B TERM 1589 1437991 - 1438020 + r 90 -14.9 -3.59979 | AGGGCGAGGCGGGCG GGCGGCGTCCCCG CGAG CGGGGACGAAGCC TTTAAGATCAGGCCC Rru_A1218 1438708 - 1438028 - | phage shock protein A, PspA TERM 1590 1438743 - 1438733 - H 71 -8.2 -4.08216 | opp_overlap 1438733 1438733 1438733 1438735, overlap 1438734 CCATGCTTGGGAAAA GGGG GCG CCCC TGTCGTGGGGTGCTC TERM 1591 1439686 - 1439723 + G 80 -17 -2.71712 | gap 1, overlap 1439687 TTTGGCGGCCGCCCC CGCTGCGCCGCCGGCGA TCCTT TCGCCGGCGGA-CGGCG CTTTGCCGCCCGAGG TERM 1592 1439687 - 1439724 + G 81 -14.8 -3.53012 | gap 1, overlap 1439686 TTGGCGGCCGCCCCC GCTGCG-CCGCCGGCGA TCCTT TCGCCGGCGGACGGCGC TTTGCCGCCCGAGGG Rru_A1219 1438898 - 1439908 + | sigma54 specific transcriptional regulator xerC 1440935 - 1439943 - | site-specific tyrosine recombinase XerC TERM 1593 1440767 - 1440750 - G 77 -9.8 -3.95051 | CAAGAAGGTCAGAAA GGCCGC CAGATC GCGGCC ATAGGCGTCCAGGGT TERM 1594 1440907 - 1440867 - G 76 -14.6 -3.16683 | gap 1, overlap 1440869 AGCGCAGGGCAGGAA CAGCCCCGGCACCACGCCG GCCT CGTCGGGGTGC-GGGGCGG GGTCGGCTGGTAAAT TERM 1595 1440905 - 1440869 - G 78 -15.8 -3.14602 | gap 1, overlap 1440867 CGCAGGGCAGGAACA GCCCCGGCACCACGCCG GCCT CGTCGGGGTGC-GGGGC GGGGTCGGCTGGTAA Rru_A1221 1441924 - 1440938 - | hypothetical protein TERM 1596 1442238 - 1442253 + G 73 -6 -4.40358 | overlap 1442239 AGTGTCCGCCCCTGC CCGCGC CTTT GCGCGC TTTTATCGACTGGGT TERM 1597 1442343 - 1442367 + G 72 -14.9 -2.71364 | overlap 1442339 CCGCCCTGGAAGCGC CGCCGCCGGCC CTT GGCTGGCGCCG TCCTTCGGCGGGTCA Rru_A1222 1441961 - 1444396 + | primosome assembly protein PriA TERM 1598 1444848 - 1444864 + G 72 -7.2 -4.2717 | overlap 1444859 AAGGCATTGACCGCG CTGGCC GAAAA GGCCGG TTTTCATGAAATCGT Rru_A1223 1444641 - 1445201 + | F0F1 ATP synthase subunit delta Rru_A1224 1445201 - 1446733 + | ATP synthase F1, alpha subunit TERM 1599 1447226 - 1447250 + G 74 -9.9 -3.87075 | opp_overlap 1447217 1447218 ATCAAAGCTCGAAGG CGATCGGCTTC AGC GACGCCGACCG TTTCTCGCGGCTGAT Rru_A1225 1446784 - 1447683 + | F0F1 ATP synthase subunit gamma Rru_A1226 1447712 - 1449136 + | F0F1 ATP synthase subunit beta TERM 1600 1449181 - 1449207 + F 78 -4.2 -4.7254 | overlap 1449145 1449145 TCCGGGCCGCGAGGC CGCCCCTCCCGT TTT ACGGTGCGCGCG TTTTTCCTGGGGGCT Rru_A1227 1449277 - 1449681 + | H+-transporting two-sector ATPase, delta/epsilon subunit TERM 1601 1449765 - 1449794 + F 95 -5.5 -5.69473 | opp_overlap 1449764 1449765, overlap 1449766 GCCGCGCAACCAAAC GGGGGATCAGGTG GTTA CACCGGGACCCCG TTTTTTTGTGGTCTC TERM 1602 1449766 - 1449793 + F 76 -9 -4.00057 | opp_overlap 1449764 1449765, overlap 1449765 CCGCGCAACCAAACG GGGGATCAGGTG GTTA CACCGGGACCCC GTTTTTTTGTGGTCT Rru_A1228 1449837 - 1450646 + | hypothetical protein Rru_A1229 1452069 - 1450753 - | hypothetical protein TERM 1603 1451526 - 1451509 - G 72 -6.9 -4.18018 | CTCGGCCACCCAAAA CGAGCCA TCGG CGGCCCG CGCCACCGCCTCGAC TERM 1604 1452026 - 1451982 - G 75 -14.2 -3.25823 | gap 1 CCGCGCCCAGATCAA GGGCCGTGACCTCGGCCGCCC CGGC GGACGGC-GCGGTCAGGGCGC TTGCCGCCATGCCCG Rru_A1230 1452667 - 1452170 - | NUDIX hydrolase Rru_A1231 1454412 - 1452664 - | hypothetical protein TERM 1605 1453131 - 1453112 - G 74 -10 -3.86897 | gap 1 TCGATCTCGGACAAA CCGCTGAGC AGG GC-CAGCGG GCCGGGATCGATCGC TERM 1606 1454322 - 1454291 - G 74 -15.8 -2.63631 | opp_overlap 1454283 1454281 CCAACGTCGATATCA TCCTCGGCCGCGCT CGAG AGGGCGGCCGGGGA TCGGGAGGGCTTGTC Rru_A1232 1455769 - 1454447 - | C-terminal processing peptidase S41A TERM 1607 1455404 - 1455431 + g 72 -13.4 -3.14564 | TCCGGCCAGGGCGGC GGGGGTCTCGTC GATC GGCGAGACCACC TTGATAAACCCGTCC Rru_A1233 1457241 - 1455766 - | peptidase M23B TERM 1608 1456352 - 1456391 + g 79 -13.5 -3.66178 | gap 1, overlap 1456355 ACCTGCGAGGCGGGC GGCGCGGCCGGCTTGGCC TGGGC GGCCAGGGCGGCCA-GCC TTTCGGCTTCGGCGC TERM 1609 1456355 - 1456390 + g 72 -14.7 -2.79492 | gap 1, overlap 1456352 TGCGAGGCGGGCGGC GC-GGCCGGCTTGGCC TGGGC GGCCAGGGCGGCCAGC CTTTCGGCTTCGGCG TERM 1610 1456859 - 1456827 - G 100 -18.3 -4.63218 | overlap 1456781 1456828 CCGCGCGCAACAAAA TCGCCCCGCGCACCG TAT CGGCGGGCGGGGCGG GCTGAACCAGCAGCG TERM 1611 1456858 - 1456828 - G 100 -21.8 -3.3761 | overlap 1456781 1456827 CGCGCGCAACAAAAT CGCCCCGCGCACCG TAT CGGCGGGCGGGGCG GGCTGAACCAGCAGC TERM 1612 1457275 - 1457245 - R 88 -19 -2.72344 | opp_overlap 1457250 1457252, overlap 1457247 GCCCAGGGTCAACCA GACCGCAGCCCCGG CGC CCAGGGCTGTGGTC TGGAAAAGACGCGAG TERM 1613 1457273 - 1457247 - R 81 -15.8 -2.90723 | opp_overlap 1457250 1457252, overlap 1457245 CCAGGGTCAACCAGA CCGCAGCCCCGG CGC CCAGGGCTGTGG TCTGGAAAAGACGCG Rru_A1234 1458865 - 1457294 - | phosphoglyceromutase TERM 1614 1458929 - 1458915 - R 81 -8.5 -4.62069 | opp_overlap 1458919, overlap 1458917 GGCTCACCGGAAAAA GCGGG GGGAT CCCGC ACGCGGGCCAGCCCC Rru_A1235 1459477 - 1459019 - | hypothetical protein TERM 1615 1459447 - 1459413 - G 77 -14.3 -3.48395 | gap 1, opp_overlap 1459438 AGCCGGCCGACATAA TGGTCGAAGAGGGCCC GTTC GGGCCCTCCACG-CCA GCGGCCGACGGCCGC Rru_A1236 1459934 - 1459518 - | Iojap-related protein Rru_A1237 1460646 - 1459966 - | cytidylyltransferase Rru_A1238 1461954 - 1460671 - | glutamate-5-semialdehyde dehydrogenase TERM 1616 1461727 - 1461766 + g 77 -16.4 -2.78738 | gap 1, overlap 1461721 1461720 1461728 1461731 TTCCAGGCGGTCGAG CA-GGGCGTCGGTCAGGCC CTT GGCCCGGCCGGCGCTCATG TCCTTGGCGTTTTCC TERM 1617 1461728 - 1461764 + g 76 -15.7 -2.93361 | overlap 1461727 1461721 1461720 1461731 TCCAGGCGGTCGAGC AGGGCGTCGGTCAGGCC CTT GGCCCGGCCGGCGCTCA TGTCCTTGGCGTTTT TERM 1618 1461731 - 1461761 + g 85 -18.2 -2.70143 | overlap 1461728 1461727 1461721 1461720 AGGCGGTCGAGCAGG GCGTCGGTCAGGCC CTT GGCCCGGCCGGCGC TCATGTCCTTGGCGT Rru_A1239 1463078 - 1461951 - | gamma-glutamyl kinase TERM 1619 1462860 - 1462881 + g 72 -7.1 -4.25104 | overlap 1462859 1462857 GGCCAGTTCGATCTG GCCGGCGGC GGCG GCGGCCTGC TTTTCATCAAGCCGC TERM 1620 1463079 - 1463125 + r 85 -15.8 -3.17901 | gap 1 GCCGATCTTGATCAC CAGCCGCCGGGCGTTGCCGAG AATGGC CTCGGCATCGAC-GGCGGCGG TTGCGTTCAGCGTGT obgE 1464307 - 1463132 - | GTPase ObgE TERM 1621 1463867 - 1463913 + g 81 -8.4 -4.4648 | CACCCAGATCTCCTG GCCCGGCCAGCCGGGATCGGCG CGG CGCGGCGCCTGATTGGTCGAGC TTTTGTAATGGGCGT TERM 1622 1464396 - 1464418 + r 100 -17.8 -3.54424 | opp_overlap 1464396 CCGGGACAGCAAAAA GGGGGAATGG ACC CCATTCCCCC TTTCGCCGAATACCA TERM 1623 1464418 - 1464396 - R 100 -17.8 -4.8048 | opp_overlap 1464396 CCGGGACAGCAAAAA GGGGGAATGG ACC CCATTCCCCC TTTCGCCGAATACCA TERM 1624 1464462 - 1464434 - R 73 -13.7 -2.73875 | opp_overlap 1464433 1464461, overlap 1464431 TTTCGCCGAATACCA GGACCCGAGCGCC ATC GGCACGCGGGACC GTCCTTGCCGCCGCA rpmA 1464765 - 1464508 - | 50S ribosomal protein L27 TERM 1625 1464741 - 1464751 + g 74 -2.4 -4.83615 | GTCCGTTGCGGGAAC TGCC GCC GGCC TTTTTATGAGCCATG Rru_A1242 1465122 - 1464820 - | 50S ribosomal protein L21P TERM 1626 1465032 - 1465072 + g 71 -12.5 -3.29461 | overlap 1465062 1465066 CAAACTCCACGGTCG CGCCCTCGTCGGCCTCGAG CTT CTCGATGTCGATGACGTCG TTCTCGGCGACCTTG TERM 1627 1465529 - 1465506 - R 100 -12.4 -5.15969 | opp_overlap 1465506 CGCCAATTCAAAAAA GCCAAGTCCC GGAA GGGGCTTGGC TTTTTTGCTGTCGAG TERM 1628 1465506 - 1465529 + r 100 -14.6 -5.21709 | opp_overlap 1465506 CGCCAATTCAAAAAA GCCAAGTCCC GGAA GGGGCTTGGC TTTTTTGCTGTCGAG TERM 1629 1465618 - 1465568 - R 71 -8.2 -4.07568 | gap 3, opp_overlap 1465606 GTCGCCTTCGGAAAA GGGC-TATCGGCCGAGGG-GCG-CC GCCC GGTCGCTCCCTCGGCCGCCCCGTCC GGCCACGGCGCCGCC Rru_A1243 1466303 - 1465635 - | cytochrome B561 TERM 1630 1465886 - 1465905 + g 72 -7.1 -4.25104 | opp_overlap 1465886, overlap 1465862 TGACGCTGTAGAAAG GCGCCAG CGGTCC CTGGTGC TTTTGCTCGGCCAGG TERM 1631 1466431 - 1466459 + r 72 -11.7 -3.33696 | opp_overlap 1466431 1466442 CCGACCGCCGATGAA CCCGGCATGAATG CGC TGTTCACGCCGGG TTCATTGACCGGGGC TERM 1632 1466459 - 1466431 - R 74 -12.5 -3.14931 | opp_overlap 1466431, overlap 1466442 CCGACCGCCGATGAA CCCGGCATGAA TGCGCTG TTCACGCCGGG TTCATTGACCGGGGC Rru_A1244 1466798 - 1466607 - | hypothetical protein Rru_A1245 1467525 - 1466875 - | Crp/FNR family transcriptional regulator Rru_A1246 1468861 - 1467698 - | hypothetical protein TERM 1633 1468307 - 1468321 + g 72 -11.4 -3.53091 | overlap 1468296 GACTGCCGCGACAGT GAGGCC GGC GGCCTC TTTCGCCAGCCGCAT Rru_A1247 1469312 - 1468977 - | XRE family transcriptional regulator TERM 1634 1469112 - 1469153 + g 71 -2.9 -4.66609 | overlap 1469137 AATACCAACGAGATG GGCAGCCTCAAAGACGAGA CCAA TTTCCGCTTTCGGGCTTCC TTTTTCGATAAGCTG TERM 1635 1469271 - 1469289 + g 71 -14.6 -2.52896 | opp_overlap 1469264 CATGAGAACGAGCGC TTCCCGCG TCG CGCGGGAA TAGGTTCGAGGATGG TERM 1636 1469492 - 1469550 + r 80 -10.4 -4.08692 | gap 3, opp_overlap 1469499 1469500, overlap 1469492 GGTTTTCGCAAAGAC --CTTGAAAGCCGACAGGCCCGGA-CGCT GGGT GGCGATCCGGGCCTGTCGGAGATCAAGTC TTTTGACGGCGGTTC TERM 1637 1469492 - 1469548 + r 100 -22.4 -3.63922 | gap 1, opp_overlap 1469499 1469500, overlap 1469492 GGTTTTCGCAAAGAC CTTGAAAGCCGACAGGCCCGGA-CGCT GGGT GGCGATCCGGGCCTGTCGGAGATCAAG TCTTTTGACGGCGGT TERM 1638 1469541 - 1469499 - R 100 -21.4 -3.62518 | gap 1, opp_overlap 1469492 1469492, overlap 1469500 GCAAAGACCTTGAAA GCCGACAGGCCCGGA-CGC TGGGTG GCGATCCGGGCCTGTCGGA GATCAAGTCTTTTGA TERM 1639 1469540 - 1469500 - R 100 -24.9 -2.77029 | gap 1, opp_overlap 1469492 1469492, overlap 1469499 CAAAGACCTTGAAAG CCGACAGGCCCGGA-CGC TGGGTG GCGATCCGGGCCTGTCGG AGATCAAGTCTTTTG Rru_A1248 1469854 - 1469564 - | hypothetical protein Rru_A1249 1470573 - 1469986 - | kinase-like Rru_A1250 1470766 - 1471782 + | Beta-lactamase TERM 1640 1471954 - 1471975 + G 72 -13.7 -3.04144 | gap 1, overlap 1471961 GGTCAGGATCGGGCC GCCCGCC-CC CAG GGCGGCGGGC TCTTCCCGGTGCCGG Rru_A1251 1471873 - 1472349 + | hypothetical protein Rru_A1252 1473713 - 1472361 - | L-glutamine synthetase TERM 1641 1473820 - 1473795 - R 100 -10.4 -5.02074 | opp_overlap 1473798, overlap 1473798 GGAGCCGTCAAAAAA GAAGGGGCCC TACAAT GGGCCCCTTG ATGTCACAAATACCA TERM 1642 1473798 - 1473817 + r 74 -12.1 -3.2614 | opp_overlap 1473798 1473795 GCCGTCAAAAAAGAA GGGGCCC TACAAT GGGCCCC TTGATGTCACAAATA TERM 1643 1473817 - 1473798 - R 100 -12.1 -4.61482 | opp_overlap 1473798, overlap 1473795 GCCGTCAAAAAAGAA GGGGCCC TACAAT GGGCCCC TTGATGTCACAAATA Rru_A1253 1475188 - 1473824 - | glutamine synthetase, catalytic region TERM 1644 1474511 - 1474472 - G 72 -8.4 -4.07568 | gap 1, overlap 1474474 CGTTGCTCGGCAAAA CAGCGCCGACCAGTCGGCG GCG CGCAG-CGGATCGGCGCAA TGGGCGAAATTGATC TERM 1645 1474509 - 1474474 - G 79 -13.2 -3.63744 | gap 1, overlap 1474472 TTGCTCGGCAAAACA GCGCCGACCAGTCGGCG GCG CGCAG-CGGATCGGCGC AATGGGCGAAATTGA TERM 1646 1474634 - 1474622 - G 78 -10.5 -4.10161 | CAGCACGTCCGAAAA GCGGC TTA GCCGC TCGATATGCATGGCC TERM 1647 1474664 - 1474712 + g 70 -13 -3.01712 | gap 1 CGGATGCAGATCGGC CCGGCCCGACAG-CGGGTCGCGC GGCG GGGCGATCAGGCCGTCGGGGCGG TCTTGGGACAGCAGA Rru_A1254 1476579 - 1475185 - | putative aminotransferase TERM 1648 1476652 - 1476675 + r 85 -6.8 -4.84527 | CTGGCATGCCTCAAT TGTGATCACA AAAA TATGATCACA TTTTTGGTCTGTCAA Rru_A1255 1477421 - 1476687 - | GntR family transcriptional regulator TERM 1649 1477551 - 1477563 + H 84 -6.2 -5.00616 | opp_overlap 1477550 GTTTATAAAAGGGAC CGGC CCAGC GCCG TTTTTTCAGGAGGGG Rru_A1256 1477585 - 1478109 + | hypothetical protein Rru_A1257 1478417 - 1479505 + | hypothetical protein Rru_A1258 1480569 - 1479871 - | hypothetical protein Rru_A1259 1480865 - 1480566 - | hypothetical protein Rru_A1260 1482081 - 1480963 - | ABC transporter component Rru_A1261 1483063 - 1482167 - | binding-protein dependent transport system inner membrane protein TERM 1650 1483053 - 1483011 - G 70 -9.8 -3.64162 | gap 1, overlap 1483004 1483001 AGGAACCAGCCGAAA CGGCGGTCCGCCCGTTCGA GAGCCG TC-ATCGGACGATCCGCCG CCCCGCTCACTTTTG Rru_A1262 1484334 - 1483060 - | extracellular solute-binding protein TERM 1651 1484107 - 1484089 - G 77 -5.2 -4.67982 | overlap 1484071 1484090 GCCGACCCAATAAAA GTCGACGA CGA TCGCCGAA TAGCCGCCTTTGCGC Rru_A1263 1485186 - 1484377 - | binding-protein dependent transport system inner membrane protein Rru_A1264 1486073 - 1485291 - | Short-chain dehydrogenase/reductase SDR TERM 1652 1486863 - 1486873 + G 79 -3.2 -4.99435 | GTTGTCTGGGTGTGG TCCT GCC GGGA TTTTTGATTATTCCC Rru_A1265 1486267 - 1487124 + | DeoR family transcriptional regulator TERM 1653 1487137 - 1487154 + F 76 -10.5 -3.74077 | overlap 1487131 TGACCTTATCGCCGG CCGCCGG CCCG TCGGCGG TTTCCCTGTCTGGAG Rru_A1266 1487176 - 1487979 + | photosystem I assembly BtpA TERM 1654 1488466 - 1488494 + G 78 -6.5 -4.57569 | overlap 1488467 1488487 GGTCACCGCCAAGCT GCGCTGGATCGAG CGT CACGAGCCGGCGG TTTTTGGCGCCATCG Rru_A1267 1488038 - 1489543 + | carbohydrate kinase, FGGY Rru_A1268 1489540 - 1490187 + | HAD family hydrolase Rru_A1269 1490271 - 1490519 + | transcription factor Rru_A1270 1494174 - 1490629 - | hypothetical protein TERM 1655 1491855 - 1491899 + g 70 -9.8 -3.66178 | gap 1 CGATGGCGGGCATAT CGGCCGACCACGCCGCCTGCC AGTC GGCCAG-GGTTTGGGCGGCCG TTTCGCGTTCGGCGG TERM 1656 1493269 - 1493225 - G 70 -10.6 -3.55622 | opp_overlap 1493249 1493264, overlap 1493226 GCCAACCCCGGCAAA GGCCCGGCC-TCGCCCAGATCG GCA CGCTCCTGGCGGCGGCCGG-CC AAGGCGGTTTCGCGA Rru_A1271 1495421 - 1494186 - | metallophosphoesterase TERM 1657 1494427 - 1494443 + g 76 -6.5 -4.56597 | overlap 1494399 TCCTGGCGCGGCGGG GTGGTTG CCA CGGCCAC TTTTTCAAGCCAGAC TERM 1658 1495529 - 1495544 + H 74 -6 -4.57569 | CCCTTCGGGCGTTTT CCCCGG AGGT CCGCGG TTTTTCGCGAAATCG TERM 1659 1496014 - 1496035 + G 70 -8.7 -3.97947 | gap 1, overlap 1496016 GCGTCGTCACGCCAT CA-CGCCGTC TTT GGCGGCGCTG TTTCTGATCGGTGGC TERM 1660 1496128 - 1496152 + G 79 -4.4 -4.72272 | overlap 1496128 1496129 1496131 AGATTATTTCGCCTT C-CATCTGTCCA ATG TGGAC-GATGAG TTTTTCATCGGCGCG Rru_A1272 1495736 - 1497634 + | diguanylate cyclase Rru_A1273 1498438 - 1497662 - | Alpha/beta hydrolase fold TERM 1661 1498293 - 1498312 + g 89 -15 -4.06419 | ATGACCGCCCAGCCG TCGGCCGC CAGG GCGGCCGA TTGTTTATCCCAGGC Rru_A1274 1499282 - 1498584 - | radical SAM family protein Rru_A1275 1499484 - 1499308 - | hypothetical protein Rru_A1276 1501538 - 1499517 - | anaerobic ribonucleoside triphosphate reductase TERM 1662 1502181 - 1502199 + G 79 -11.6 -3.83026 | overlap 1502173 GATGGCACGCCGGCC GCGCCGCC GCG GGCGTCGC TTTCCTATACGGAAG TERM 1663 1502255 - 1502282 + G 71 -9 -3.88291 | gap 1, overlap 1502257 GACCGCCAATCGTCA CCGCGCCCG-GGG GAT CCCGCTGGCGCTG TTTCTCGGCCTGCTG TERM 1664 1503619 - 1503629 + G 70 -2.4 -4.58395 | overlap 1503616 1503598 1503597 ATACGGCCAATGGCC AGCC CCC GGCG TTTTTGGCCGATCGG Rru_A1277 1502001 - 1504436 + | Hpt sensor hybrid histidine kinase Rru_A1278 1504758 - 1505591 + | sulfotransferase Rru_A1279 1507531 - 1505603 - | asparagine synthase TERM 1665 1507416 - 1507392 - G 93 -5 -5.28176 | gap 1, opp_overlap 1507411, overlap 1507394 GGTACCGACAAAAAA CAGGCTTTGTC ATCC GACAGAGCC-G CGCCCTTATTCCGGC TERM 1666 1507415 - 1507394 - G 76 -8.7 -4.2748 | opp_overlap 1507411, overlap 1507392 TACCGACAAAAAACA GGCTTTGTC ATCC GACAGAGCC GCGCCCTTATTCCGG Rru_A1280 1509271 - 1508300 - | Hpr(Ser) kinase/phosphatase TERM 1667 1508919 - 1508902 - G 72 -5.5 -4.42062 | CACGCCGGAAACAAA GCACGGC CAAC ACCGTAC CGAAGAAAAACAATC Rru_A1281 1509355 - 1509630 + | hypothetical protein TERM 1668 1509725 - 1509690 - T 81 -13.2 -3.32727 | gap 1, opp_overlap 1509694 1509710, overlap 1509693 CGAAGACGACATCAA GCAGCCGGGGCGGGCGA GGA TCAGCCGCCCTGGC-GC GCGGCCGATTTCTCG TERM 1669 1509723 - 1509693 - T 77 -14.6 -2.82786 | opp_overlap 1509694 1509710, overlap 1509690 AGACGACATCAAGCA GCCGGGGCGGGCGA GGA TCAGCCGCCCTGGC GCGCGGCCGATTTCT Rru_A1282 1510459 - 1509710 - | two component transcriptional regulator Rru_A1283 1510692 - 1511870 + | membrane-bound tetrahaem cytochrome TorC/YecK Rru_A1284 1511881 - 1512492 + | cytoplasmic chaperone TorD TERM 1670 1512522 - 1512556 + F 100 -21.5 -3.17075 | opp_overlap 1512522, overlap 1512522 CGTCCCCCCCAAAAA CCAGCCCCGCCGG CTTTTGTCC CCGGCGGGGCTGG TTGCGTTCAAGGGGG TERM 1671 1512556 - 1512522 - f 100 -21.5 -4.56597 | opp_overlap 1512522 1512522 CGTCCCCCCCAAAAA CCAGCCCCGCCGG CTTTTGTCC CCGGCGGGGCTGG TTGCGTTCAAGGGGG TERM 1672 1512886 - 1512863 - f 76 -9.8 -3.72695 | opp_overlap 1512863 1512867, overlap 1512867 AGGCCGCGCATTAAA TAAACGAATA AATT TATTCGTTTA TAAGTTGAAATAATC TERM 1673 1512882 - 1512867 - f 74 -6.2 -4.49556 | opp_overlap 1512867 1512863, overlap 1512863 CGCGCATTAAATAAA CGAATA AATT TATTCG TTTATAAGTTGAAAT TERM 1674 1513622 - 1513639 + G 76 -6.3 -4.52949 | gap 1, overlap 1513625 GGGATTACCTTCCTT TGAGGCGT CTA ACGCC-CA TCTTTTTTTTGGCCG TERM 1675 1514314 - 1514335 + G 72 -8.8 -4.08064 | opp_overlap 1514332 GGCCGGCTCAAGTTT TTGGTGTC GAAACA GACACCAA TTTTGCCACCAACTT TERM 1676 1515628 - 1515646 + G 77 -7.4 -4.32034 | overlap 1515613 CAGGTTCAGTGCTTT CTGGCAGG GAA TCTGTCAG TTTTAGTCCTGATGG Rru_A1285 1512945 - 1517420 + | WD-40 repeat-containing protein Rru_A1286 1517461 - 1517793 + | hypothetical protein TERM 1677 1517918 - 1517964 + F 86 -12.5 -3.93369 | gap 1, opp_overlap 1517929, overlap 1517924 1517926 1517929 TTCGCTCGACGATTC CCGGGTAACAAGAGGTGTACAC TTAA GTGTACACCTCTTGT-GTTGGG TTTGGTTGAACTTGC TERM 1678 1517924 - 1517959 + F 95 -17.8 -3.33399 | opp_overlap 1517929, overlap 1517918 1517926 1517929 CGACGATTCCCGGGT AACAAGAGGTGTACAC TTAA GTGTACACCTCTTGTG TTGGGTTTGGTTGAA TERM 1679 1517926 - 1517957 + F 95 -20.4 -3.22878 | opp_overlap 1517929, overlap 1517924 1517918 1517929 ACGATTCCCGGGTAA CAAGAGGTGTACAC TTAA GTGTACACCTCTTG TGTTGGGTTTGGTTG TERM 1680 1517929 - 1517954 + F 95 -16.3 -3.73873 | opp_overlap 1517929, overlap 1517926 1517924 1517918 ATTCCCGGGTAACAA GAGGTGTACAC TTAA GTGTACACCTC TTGTGTTGGGTTTGG TERM 1681 1517954 - 1517929 - f 93 -16.3 -3.61517 | opp_overlap 1517929 1517926 1517924 1517918 ATTCCCGGGTAACAA GAGGTGTACAC TTAA GTGTACACCTC TTGTGTTGGGTTTGG TERM 1682 1519446 - 1519490 + G 74 -15 -3.05384 | gap 2 CGCCACCGGTCCCGT GCTGCCCGCCATCAGCGACGGC AGC GCCG-CGGTGAAGG-GGGCGGC TTGGCTGGCCGCCGG Rru_A1287 1518208 - 1520679 + | trimethylamine-N-oxide reductase (cytochrome c) TERM 1683 1520694 - 1520736 + F 86 -14.1 -3.494 | overlap 1520695 ACGCCTGAGCGCTCC ATGCTTCGGGACCGCCG CTTGCCTCC CGGCGGTCCCGGAGCCC TTCTCTCCGGCCTTC TERM 1684 1520695 - 1520735 + F 84 -17.6 -2.69319 | overlap 1520694 CGCCTGAGCGCTCCA TGCTTCGGGACCGCCG CTTGCCTCC CGGCGGTCCCGGAGCC CTTCTCTCCGGCCTT Rru_A1288 1520773 - 1521765 + | molybdenum cofactor synthesis protein TERM 1685 1521802 - 1521855 + F 71 -9.1 -3.73224 | gap 3, opp_overlap 1521812, overlap 1521812 GCTTTTTTGGTCGCT TGCTCA--AAAACGCCCGCGTATCCC GGAAA GGGAT-CGCGGGCGTTGTCGTGATCA TTTGATGACGAATAG TERM 1686 1521812 - 1521843 + F 100 -18.1 -3.46138 | gap 1, opp_overlap 1521812, overlap 1521802 TCGCTTGCTCAAAAA CGCCCGCGTATCCC GGAAA GGGAT-CGCGGGCG TTGTCGTGATCATTT TERM 1687 1521843 - 1521812 - f 100 -18.1 -4.56597 | gap 1, opp_overlap 1521812 1521802 TCGCTTGCTCAAAAA CGCCCGCGTATCCC GGAAA GGGAT-CGCGGGCG TTGTCGTGATCATTT Rru_A1289 1522107 - 1523849 + | alkaline phosphatase TERM 1688 1524137 - 1524167 + G 95 -5.2 -5.47159 | opp_overlap 1524118, overlap 1524139 GACCATGCGCGGCTT CATGGCGCCGCCCT TGA AGGCCGAGGCCAAG TTTTTTGTCTTAAGC Rru_A1290 1523931 - 1524395 + | hypothetical protein TERM 1689 1524956 - 1524978 + G 71 -9 -3.78775 | GATCTGCTGGTCAAT CTGGCCAAGG ATG CCGGGGCCAG TTTGATCGTCGCCAG Rru_A1291 1524398 - 1525063 + | ABC transporter component TERM 1690 1525342 - 1525372 + G 73 -11 -3.73224 | CGGCCGATCCCCGCG TCGCCTATGCCGCC CCC GTCGGCTTTGGCGA TTTCGTCGGCGATCA Rru_A1292 1525065 - 1526327 + | hypothetical protein TERM 1691 1526313 - 1526344 + T 100 -17.3 -4.1552 | overlap 1526315 CAGTCGCCGCTGGCG GCCCTGCGCGGCT AGAGCA AGCCGCGCAGGTC TTTCTTCACGCGCTG TERM 1692 1526315 - 1526342 + T 100 -18.5 -3.6761 | overlap 1526313 GTCGCCGCTGGCGGC CCTGCGCGGCT AGAGCA AGCCGCGCAGG TCTTTCTTCACGCGC Rru_A1293 1528084 - 1526396 - | methyl-accepting chemotaxis sensory transducer TERM 1693 1527519 - 1527553 + g 79 -2.6 -5.01732 | opp_overlap 1527515, overlap 1527517 1527519 ATGATCAAGACCTGG GCGTCGGAGTCGCTCT GAT AGGCCTCTTCCGCCGC TTTTTTGGCGCCCTT Rru_A1294 1528275 - 1529009 + | histidine utilization repressor TERM 1694 1529003 - 1529019 + F 83 -4.3 -5.03715 | opp_overlap 1528993 1528996 1528995, overlap 1529001 GGAAAGAGGGCGTCC CGCCTAA TAA TCGGGCG TTTTTTCAAAGTGCT Rru_A1295 1529210 - 1530088 + | extracellular solute-binding protein TERM 1695 1530088 - 1530103 + F 71 -6.8 -4.18018 | CGAGCCCTCCTTCTA GGACCG GTCC CGGTTC TTTTCCGTCGCGCCC TERM 1696 1530108 - 1530140 + F 79 -12.7 -3.53012 | gap 1, overlap 1530108 1530120 GGTCCCGGTTCTTTT CCG-TCGCGCCCCC CGCTCC GGGGGCGCGACCCG TTTGCCCGGACGCCG Rru_A1296 1530160 - 1530816 + | amino acid ABC transporter permease Rru_A1297 1530813 - 1531496 + | amino acid ABC transporter permease Rru_A1298 1531496 - 1532287 + | ABC transporter component Rru_A1299 1532308 - 1533678 + | FAD linked oxidase-like Rru_A1300 1534478 - 1533684 - | N-formylglutamate deformylase Rru_A1301 1536039 - 1534495 - | histidine ammonia-lyase Rru_A1302 1537403 - 1536036 - | N-formimino-L-glutamate deiminase TERM 1697 1536206 - 1536170 - G 79 -2.8 -5.0133 | gap 1, overlap 1536182 CATTGCCCGAAAAAA TCCAGGCATCAAGGGCG CCAT CGCCCGAG-CGCCCGCA CAGCACGGGCGCCTC TERM 1698 1537489 - 1537470 - H 73 -4.9 -4.64657 | opp_overlap 1537474, overlap 1537472 CGAAAGCCTGAAAAA CCGAGCC TTCGCG GGCTCTG ATCGGAGCGGGGACG TERM 1699 1538186 - 1538200 + G 77 -7 -4.56597 | TCGCCTTTTCCCTTG CCCAGG CCA CCCGGG TTTTTGAAGCGGCGC Rru_A1303 1537507 - 1538751 + | imidazolonepropionase Rru_A1304 1538781 - 1540451 + | urocanate hydratase Rru_A1305 1540757 - 1540461 - | transcriptional regulator TERM 1700 1540747 - 1540767 + g 71 -3.1 -4.62783 | TCGAAGGGCGCGGTG GGAAGCGTC ATG GGCGGATCC TTTTTCGCCTCACTC Rru_A1306 1541610 - 1540777 - | short chain dehydrogenase Rru_A1307 1542119 - 1541607 - | thioesterase superfamily protein Rru_A1308 1544018 - 1542228 - | Acyl-CoA dehydrogenase Rru_A1309 1546375 - 1544051 - | 3-hydroxyacyl-CoA dehydrogenase TERM 1701 1546168 - 1546206 + g 85 -5.8 -5.00884 | overlap 1546172 TGCCCGGCGTCACCC GCTTGGCCGCCGCCTT GCCCATG AAGGCGGAGGGCTCGC TTTTTTGCAGGCGCT Rru_A1310 1547531 - 1546389 - | Acetyl-CoA C-acyltransferase Rru_A1311 1547982 - 1547584 - | MerR family transcriptional regulator TERM 1702 1548108 - 1548083 - R 70 -9.8 -3.53444 | gap 1, overlap 1548085 TCAGGCGCGCGGAAA GATCGCGATGG CCCCC CCATCGCGA-C AAACTCAGGAGGCCT TERM 1703 1548107 - 1548085 - R 81 -13.5 -3.34517 | overlap 1548083 AGGCGCGCGGAAAGA TCGCGATGG CCCCC CCATCGCGA CAAACTCAGGAGGCC TERM 1704 1548120 - 1548142 + r 73 -9.8 -3.58037 | overlap 1548132 CGACAAACTCAGGAG GCCTTGTCTG CGC CGGCCAAGGC TTTGGCCCGTTCCTC Rru_A1312 1549807 - 1548113 - | AMP-dependent synthetase and ligase TERM 1705 1549847 - 1549884 + r 100 -13.4 -4.77157 | opp_overlap 1549847, overlap 1549849 1549851 GTTTGGCGGTGGAAA GCGGCGCTTCCGCTGG AGGGGG CCAACGGAAGCGTCCC TTTTTGATGGCTTAG TERM 1706 1549884 - 1549847 - R 86 -13.4 -3.53012 | opp_overlap 1549847 1549849 1549851 GTTTGGCGGTGGAAA GCGGCGCTTCCGCTGG AGGGGG CCAACGGAAGCGTCCC TTTTTGATGGCTTAG TERM 1707 1549849 - 1549882 + r 76 -14.6 -2.6662 | opp_overlap 1549847, overlap 1549847 1549851 TTGGCGGTGGAAAGC GGCGCTTCCGCTGG AGGGGG CCAACGGAAGCGTC CCTTTTTGATGGCTT TERM 1708 1549851 - 1549880 + r 75 -13.6 -2.86601 | opp_overlap 1549847, overlap 1549849 1549847 GGCGGTGGAAAGCGG CGCTTCCGCTGG AGGGGG CCAACGGAAGCG TCCCTTTTTGATGGC Rru_A1313 1551185 - 1549896 - | aromatic hydrocarbon degradation protein TERM 1709 1550877 - 1550847 - G 70 -11 -3.51365 | opp_overlap 1550856, overlap 1550848 1550850 GTATACGCCATAGAA TGACGGCACGGCCG CGT CGGCCACGGCGTCG CCGCCTTCGATGCTG TERM 1710 1550876 - 1550848 - G 72 -14.5 -2.70498 | opp_overlap 1550856, overlap 1550847 1550850 TATACGCCATAGAAT GACGGCACGGCCG CGT CGGCCACGGCGTC GCCGCCTTCGATGCT Rru_A1314 1551972 - 1551313 - | hypothetical protein TERM 1711 1551457 - 1551431 - G 77 -5.1 -4.65895 | gap 2, opp_overlap 1551453, overlap 1551432 CCCTTGAGGGAAAAA CGCTCGGCGTCAA TGG CCG-CGCCG-GCG ATCACCACCGTCTCC Rru_A1315 1552283 - 1551984 - | sterol-binding TERM 1712 1552931 - 1552941 + G 83 -2.4 -5.14163 | opp_overlap 1552930 TTATCATCAAAGACG CCGG CGA CCGC TTTTTGTTCGTCGAT TERM 1713 1554195 - 1554183 - g 70 -6.2 -4.24002 | CGGCAAACTTCAAAA GCGC GAGCT GCGC CAAGTCTATGGCGCC Rru_A1316 1552600 - 1554240 + | AMP-dependent synthetase and ligase TERM 1714 1554306 - 1554283 - f 91 -8.1 -4.72486 | overlap 1554270 1554285 CAGAAATTCTAAAAA TTCCCCCGG TCCAAC CCGGGGCAA GGCCGGCGACAAGGC TERM 1715 1554436 - 1554447 + G 74 -5.8 -4.49556 | TGAAGCAATTGCGCC CCGA CACC TCGG TTTGTTTGATCGAGA Rru_A1317 1554345 - 1555970 + | electron-transferring-flavoprotein dehydrogenase Rru_A1318 1556456 - 1556872 + | hypothetical protein Rru_A1319 1557388 - 1558311 + | triphosphoribosyl-dephospho-CoA synthase TERM 1716 1558349 - 1558308 - f 100 -16.7 -5.14563 | gap 1, overlap 1558310 1558312 TGCCCTAGGAAAAAA CTGATTTCGCCGG-CATCGG TCC CCGATGACCGACGAAACCCG CAGCGCATGAGGAAC TERM 1717 1558347 - 1558310 - f 86 -17.9 -2.80472 | gap 1, overlap 1558308 1558312 CCCTAGGAAAAAACT GATTTCGCCGG-CATCGG TCC CCGATGACCGACGAAACC CGCAGCGCATGAGGA TERM 1718 1558345 - 1558312 - f 85 -16.9 -2.94298 | gap 1, overlap 1558310 1558308 CTAGGAAAAAACTGA TTTCGCCGG-CATCGG TCC CCGATGACCGACGAAA CCCGCAGCGCATGAG Rru_A1320 1558503 - 1559714 + | Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Rru_A1321 1559816 - 1560649 + | biotin--acetyl-CoA-carboxylase ligase Rru_A1322 1560682 - 1562355 + | alpha subunit of malonate decarboxylase TERM 1719 1562681 - 1562627 - g 70 -8.3 -3.90241 | gap 1, overlap 1562619 1562628 GATCAACGACAACAA TGCCACCCCCGCCGTGGTCCTGCTGC GCTT GCGCCAGGCCCT-GGCGGAAGCGGCT GGCAAGTAAGGAGAG Rru_A1323 1562373 - 1562690 + | malonate decarboxylase delta subunit Rru_A1324 1562704 - 1563660 + | malonate decarboxylase subunit beta Rru_A1325 1563702 - 1564595 + | hypothetical protein TERM 1720 1564754 - 1564725 - g 74 -9.9 -3.85817 | opp_overlap 1564729 ACGCTGGCCGATAAA GGCATTGACGGCC CGAC GGCCGCCCATGTC ATCGAGGAGGTCCAT Rru_A1326 1564629 - 1565729 + | hypothetical protein Rru_A1327 1565732 - 1566484 + | hypothetical protein Rru_A1328 1566530 - 1566739 + | biotin/lipoyl attachment TERM 1721 1566743 - 1566779 + F 78 -5 -4.72846 | gap 1, overlap 1566751 GTTGTTGAGTGAGCT TGTGACTTCGGGGCGGC ATGG GCCGCCCCGTT-TCAAG TTTTTGCCTCTCTAG TERM 1722 1566751 - 1566772 + F 100 -18.7 -3.8046 | overlap 1566743 GTGAGCTTGTGACTT CGGGGCGGC ATGG GCCGCCCCG TTTCAAGTTTTTGCC TERM 1723 1567059 - 1567087 + G 70 -10.2 -3.72695 | opp_overlap 1567073 GCCCAGCAGAACGTG GTGAGCGCCATG AACGG CGGGGCGCTCGC TTTCGTCGCCGGCCT Rru_A1329 1566807 - 1567196 + | transporter Rru_A1330 1567199 - 1567972 + | malonate/sodium symporter MadM subunit Rru_A1331 1568227 - 1568907 + | ABC transporter component Rru_A1332 1568904 - 1569629 + | cobalt transport protein Rru_A1333 1569698 - 1570132 + | BioY protein TERM 1724 1570249 - 1570299 + T 95 -11.8 -4.54343 | opp_overlap 1570249, overlap 1570250 1570253 CAAAGCTTTGAGGAA TTGCTCTAGGGTCTGTCCGCTTGA TGC TGAAGCGGCCAGACCCTGGATCCC TTTGTTTGAGTTTGT TERM 1725 1570250 - 1570298 + T 86 -15.3 -3.30979 | opp_overlap 1570249, overlap 1570249 1570253 AAAGCTTTGAGGAAT TGCTCTAGGGTCTGTCCGCTTGA TGC TGAAGCGGCCAGACCCTGGATCC CTTTGTTTGAGTTTG TERM 1726 1570253 - 1570295 + T 95 -20 -2.80991 | opp_overlap 1570249, overlap 1570250 1570249 GCTTTGAGGAATTGC TCTAGGGTCTGTCCGCTTGA TGC TGAAGCGGCCAGACCCTGGA TCCCTTTGTTTGAGT Rru_A1334 1570801 - 1570355 - | ribose-5-phosphate isomerase TERM 1727 1570847 - 1570857 + H 71 -8.2 -4.07568 | overlap 1570836 TTGGCGCGACGGACC GGGC GTC GCCC TTTTGGCGGGGCCCC TERM 1728 1571474 - 1571487 + G 75 -9.5 -4.11216 | GATGGCGGCCCAGGT GCCCG AACT CGGGC TTTTGGCGATCGGCG TERM 1729 1571648 - 1571694 + G 71 -12.1 -3.33151 | opp_overlap 1571690, overlap 1571647 1571649 1571686 TACCCTGTCCTTCGC CGCCGTTGCCCTGGCCGTCGG CCTGA TCGGCGGCCTGATCAACGGCC TGTTGATTTCGCGGG TERM 1730 1571649 - 1571693 + G 74 -15.6 -2.59569 | opp_overlap 1571690, overlap 1571648 1571647 1571686 ACCCTGTCCTTCGCC GCCGTTGCCCTGGCCGTCGG CCTGA TCGGCGGCCTGATCAACGGC CTGTTGATTTCGCGG TERM 1731 1571827 - 1571841 + G 75 -4.9 -4.62069 | overlap 1571828 AGCCGCTCGATGATT TCGGC AATGC GCCGG TTTTTGGCGTGCCGA Rru_A1335 1571352 - 1572413 + | inner-membrane translocator Rru_A1336 1572476 - 1573477 + | periplasmic binding protein/LacI transcriptional regulator Rru_A1337 1573646 - 1575229 + | ABC transporter component TERM 1732 1575249 - 1575285 + G 70 -10.1 -3.65522 | gap 1, opp_overlap 1575219 1575265, overlap 1575249 TCTCGCGCTCGATCT GCCCGGCGCCG-CGAA ACGCCC TTCGACGGCGCGGGCC TTGTTGCGCTGGCTG TERM 1733 1575930 - 1575946 + G 74 -7.9 -4.21098 | opp_overlap 1575930, overlap 1575922 GAGGCTGGGCTACAA CCTGCGC AAG GTGCGGG TTTTCGCCTTCATGT Rru_A1338 1575226 - 1576257 + | inner-membrane translocator Rru_A1339 1577366 - 1576275 - | DeoR family transcriptional regulator TERM 1734 1577453 - 1577490 + H 76 -13.4 -3.08679 | gap 2 CCGCAGGTGTTTGGT TGGAGGGCC-CGG-GCCC GCCC GGGCGCCGCGGCCCGCCG TCTTCGATCCGCGAG Rru_A1340 1577909 - 1578913 + | Glycerone kinase Rru_A1341 1578910 - 1579551 + | Dak phosphatase TERM 1735 1579665 - 1579628 - f 89 -12.7 -4.10453 | opp_overlap 1579640, overlap 1579617 1579629 CAAAGGCCGGGAAAA CCGCCGGCCAAAGGTCC GATC GCACCTTTGGCCGACCA ACGGCTTGGGCCCGG TERM 1736 1579664 - 1579629 - f 76 -14 -3.0579 | opp_overlap 1579640, overlap 1579617 1579628 AAAGGCCGGGAAAAC CGCCGGCCAAAGGTCC GATC GCACCTTTGGCCGACC AACGGCTTGGGCCCG TERM 1737 1579782 - 1579813 + F 100 -20.9 -4.13767 | opp_overlap 1579771 CCTAGGGCGCGGCGC CACCCCCGGCGGG GCCCTG TCCGCCGGGGGTG TTTTCCCGTAGCGGC TERM 1738 1580369 - 1580396 + F 100 -14.1 -5.0538 | TAGGGCGAGGCGCTA CCCCCGGCGGG GCCCTG TCCGTCGGGGG TTTTTTCCCATCGCG TERM 1739 1580532 - 1580504 - f 75 -3 -5.00616 | gap 1, opp_overlap 1580520, overlap 1580506 GCGGGCGGGAAAAAA GGGACGGGGCCAC CGAG GTGGTCC-GCCAC CTTTCCCGCGCCGGG Rru_A1342 1580666 - 1581382 + | hypothetical protein Rru_A1343 1583757 - 1582246 - | hypothetical protein TERM 1740 1583073 - 1583045 - G 76 -14.5 -3.10715 | CCCATCATCAGCGAA GCCGTTGAGGCGC CGC GCGCCTCGAGGGC GGGCAGGCGGGCGTA TERM 1741 1583244 - 1583282 + g 72 -8.9 -4.11394 | gap 2, overlap 1583245 TGTCGACATGGGGGT AGGT-GCGATAGCCGA-GC AGG GCGTCGGCCATCGCCACCA TTTTCGGCGTCACAT TERM 1742 1584059 - 1584046 - g 73 -5.9 -4.36914 | CCGGCCTGGATAAAA GCGCC GCCC AGCGC TTCGCCCACACCTTT Rru_A1344 1583898 - 1584686 + | IclR family transcriptional regulator TERM 1743 1584866 - 1584852 - g 79 -7.1 -4.64861 | overlap 1584854 TGTTGGGAAAACAAA TCCGC CAGTC GCGGA TCATCGATCCGAAAA TERM 1744 1584892 - 1584882 - g 72 -8.2 -4.14739 | opp_overlap 1584882 1584885, overlap 1584854 TCATCGATCCGAAAA GCCG GCG CGGC TTCTGCATCGCCTTC Rru_A1345 1584827 - 1585681 + | fructose-bisphosphate aldolase Rru_A1346 1587285 - 1585705 - | pentulose kinase TERM 1745 1585769 - 1585755 - G 79 -8.5 -4.32034 | GCATCATCAGGAAAA CCCGG TAATC CCGGG TGAAGCGTTCAAAGG TERM 1746 1586842 - 1586803 - G 71 -2.8 -4.70659 | gap 1, overlap 1586806 1586807 1586835 GGCCAGATCGAAAAA GAAGCCGGCGCGCTCCC AGCGCTG GGGAAAATGCCG-CTTC AGCCACATCAGCTTG TERM 1747 1587021 - 1587000 - G 78 -13.7 -3.53012 | CGCCGGTGGTCGAAA CGCCAAGGG GCAG CCCCTGGCG GTCGCGCACCACCAG Rru_A1347 1588243 - 1587539 - | GntR family transcriptional regulator TERM 1748 1587827 - 1587792 - G 72 -6.8 -4.25283 | opp_overlap 1587812 1587813 AGCGCCTGATGAAAA CGGCCATTAAGCCG GGTATAGG CGGCCTGATCGCCG CGTTTGACCATGTCG TERM 1749 1588789 - 1588811 + G 79 -4.1 -4.9218 | gap 1, opp_overlap 1588773, overlap 1588792 GCCGCTCGCTGCAAG GCGCGATGTC GGCG GTCATCG-GC TTTTTCTCCTCGCTG Rru_A1348 1588338 - 1589168 + | hypothetical protein TERM 1750 1589706 - 1589732 + G 74 -7.8 -4.2558 | overlap 1589707 GCGAAGCCGCCCTGG TCGCCGGCGACT CCG GGGCGGCGGCGG TTTTCCTGCCCGATG Rru_A1349 1589219 - 1590805 + | gamma-glutamyltransferase 2 TERM 1751 1591885 - 1591932 + G 83 -15.5 -3.53012 | gap 1 GATCGCGCTGGTCGT GGTCCGCCCACTGACCGCCTGG ATCGG TCTGGCGGGCA-TGGGCGGCCC TTTGGCCGAAAGGGC Rru_A1350 1590893 - 1592158 + | Sodium/hydrogen exchanger Rru_A1351 1592585 - 1593955 + | hypothetical protein TERM 1752 1593974 - 1594004 + F 100 -18.3 -5.07652 | gap 1, overlap 1593946 AGACTGAGACCCTCG GGCCCGGTGCGCGC TTCT GCGC-CGCCGGGCC TTTTCTTTTGGCGAG TERM 1753 1594137 - 1594122 - g 70 -11.8 -3.41795 | opp_overlap 1594121 1594122, overlap 1594110 AAAGGCTCAGCAGAA GGCCGC CGGT GCGGCC CTTTCGGCCAAGCGG TERM 1754 1594184 - 1594169 - g 88 -8.2 -4.89562 | GCAAAACCAAGAAAA GCGCCC TGAA AGGCGC CTCGAAGGAGATGGT Rru_A1352 1594093 - 1594284 + | hypothetical protein TERM 1755 1594260 - 1594287 + F 76 -9.8 -3.85082 | overlap 1594253 GCTTAAGGGTAAGCC CGATCACGTCGC CAAA GCGACGTGAGGG TTTGCTGATCTCTTT Rru_A1353 1594401 - 1594910 + | hypothetical protein Rru_A1354 1595074 - 1595424 + | hypothetical protein TERM 1756 1595470 - 1595526 + T 100 -16.7 -4.19238 | gap 2, opp_overlap 1595453 1595484, overlap 1595484 GGGCGGGGGCGGTGA TCGCCACGCGAAAACGCCCGGACCCCG CTTGC CGAGGTCCGGGCGTTT-CGT-TGCCGG TTTTCGAGTTAGCGC TERM 1757 1595484 - 1595514 + T 100 -19.7 -3.922 | opp_overlap 1595453 1595484, overlap 1595470 ATCGCCACGCGAAAA CGCCCGGACCCCG CTTGC CGAGGTCCGGGCG TTTCGTTGCCGGTTT TERM 1758 1595514 - 1595484 - T 100 -21.9 -4.13945 | opp_overlap 1595484 1595470, overlap 1595453 ATCGCCACGCGAAAA CGCCCGGACCCCG CTTGC CGAGGTCCGGGCG TTTCGTTGCCGGTTT Rru_A1355 1596029 - 1595535 - | hypothetical protein Rru_A1356 1598317 - 1596203 - | catalase TERM 1759 1596625 - 1596611 - G 75 -9.2 -4.1552 | GATCTCGTCAAGAAA GGCGCC GTC GACGCC ATCGCTGACCAGCAC TERM 1760 1598591 - 1598564 - R 100 -19.8 -5.14563 | opp_overlap 1598557 CCGGGCATGAAAAAA CCGCCCGGCAGC GGAA GCGGCCGGGCGG TTGGGGGTGGTTAGA Rru_A1357 1599603 - 1598620 - | transaldolase B TERM 1761 1599635 - 1599657 + r 74 -12 -3.494 | overlap 1599636 TTTTGAGTCATCCAT GGCAAGGGGT GGC ACCCCTTGCG TTCTCTGCCGGGTTA TERM 1762 1599636 - 1599656 + r 79 -15.5 -2.69319 | overlap 1599635 TTTGAGTCATCCATG GCAAGGGGT GGC ACCCCTTGC GTTCTCTGCCGGGTT tpiA 1600545 - 1599769 - | triosephosphate isomerase TERM 1763 1599833 - 1599806 - G 70 -10.6 -3.53012 | TTGGCCCCGTGCAAA GCGGCCTCGA TCACCTCT TCGAAGCCGC GCGCCGTCCAGGCGG Rru_A1359 1601097 - 1600621 - | ribose-5-phosphate isomerase Rru_A1360 1601768 - 1601121 - | Dak phosphatase TERM 1764 1601344 - 1601323 - G 71 -15.1 -2.52543 | ACCTCGGGCAAGGGA GCGCCGGCG CTAA CGCCAGCGC GGGCGGCGAGGGCGG Rru_A1361 1602781 - 1601780 - | Glycerone kinase Rru_A1362 1603712 - 1602819 - | xylose isomerase-like TIM barrel Rru_A1363 1604779 - 1603781 - | inner-membrane translocator TERM 1765 1604034 - 1604008 - G 75 -13.7 -3.29144 | overlap 1604012 CGATCGGCGCCAGAA CCCAGCCCTCG CCGAT CGACGGCTGGG CGGTGCCCAGGCGGG TERM 1766 1604113 - 1604151 + g 70 -11.6 -3.39784 | overlap 1604111 AGACGCAGACCCGGA TGGCGTTGGTGCGGATGC CGA GCATGCGGGCCGCCGCCA TGTTATTGCCGATGG Rru_A1364 1606325 - 1604769 - | ABC transporter component TERM 1767 1605110 - 1605123 + g 73 -5.9 -4.3534 | TGCGCGCCATGGCGC GGCCG ATGA TGGCC TTTTGCTGATTGCCG TERM 1768 1606519 - 1606573 + r 76 -9.5 -4.09685 | gap 3 GGCGAGACTTTCCTT GGTGATGACGGCGATGCCGGTGTCGA TGTACT TCGGCGTCGGCAT-GCC--CATCGCC TTTTGCCAGGTGGCG Rru_A1365 1607436 - 1606498 - | ribose ABC transporter, periplasmic binding protein TERM 1769 1607181 - 1607191 + g 71 -3.2 -4.63218 | overlap 1607178 TGGCGATCGAGCGGG CGAT GAT GTCG TTTTGTTCGACCACA Rru_A1366 1608662 - 1607694 - | DeoR family transcriptional regulator TERM 1770 1608015 - 1607988 - G 74 -9.8 -3.7941 | gap 1 GACGGCCGAGAACAA CTGCGAGCGCCCC GAC AGGTCGC-CGCAG GCGACAAGGGCGACA Rru_A1367 1609285 - 1608728 - | hexulose-6-phosphate isomerase TERM 1771 1609180 - 1609165 - G 74 -10.4 -3.89346 | GGCCGACGCCATAAA GCGCGA TCTG TCGCGC CTTGACGAATTCCTC Rru_A1368 1611683 - 1609440 - | hypothetical protein Rru_A1369 1614103 - 1611725 - | hypothetical protein TERM 1772 1612132 - 1612099 - G 75 -9.5 -4.06419 | gap 1, overlap 1612101 1612102 CGTCGCTATAAAGAA GATCGGCGCGGTAGCT GTA AGCTCGCGCGCCG-CC ATCGATCAGCCGCTG TERM 1773 1612131 - 1612101 - G 73 -11 -3.62695 | overlap 1612099 1612102 TCGCTATAAAGAAGA TCGGCGCGGTAGCT GTA AGCTCGCGCGCCGC CATCGATCAGCCGCT TERM 1774 1612130 - 1612102 - G 72 -14.5 -2.77135 | overlap 1612101 1612099 CGCTATAAAGAAGAT CGGCGCGGTAGCT GTA AGCTCGCGCGCCG CCATCGATCAGCCGC TERM 1775 1612430 - 1612406 - G 74 -2.2 -4.72272 | gap 1, opp_overlap 1612397 1612396 GCTGGTCAGCAAAAA GCTGGTTTCAT AGGT AT-AATCCAGC GACTTGTTGCCCCCC Rru_A1370 1614836 - 1614171 - | hypothetical protein Rru_A1371 1615130 - 1614858 - | hypothetical protein Rru_A1372 1615981 - 1615127 - | hypothetical protein TERM 1776 1615309 - 1615276 - G 80 -15.3 -3.25823 | gap 1, overlap 1615279 CGGCCGCGACATCAA GAACGG-CGGCGGTGG TGA CCAGCGCCGGCCGCTC GCCCTCGGCATCGAA TERM 1777 1615306 - 1615279 - G 83 -13.4 -3.7732 | gap 1, overlap 1615276 CCGCGACATCAAGAA CGG-CGGCGGTGG TGA CCAGCGCCGGCCG CTCGCCCTCGGCATC Rru_A1373 1616905 - 1615988 - | peptidase C14, caspase catalytic subunit p20 TERM 1778 1616195 - 1616144 - G 71 -9.3 -3.86015 | opp_overlap 1616120 GAGCTCGGCGACAAA GGCGGTGTTCGAGATCGCTAGCC CGCTTT GGCGGACGATATCGACCATCGCC GTCATGAAGACCGAG TERM 1779 1616416 - 1616402 - G 79 -7 -4.67038 | overlap 1616404 GCGGCAAAAGGAAAA GCCGGC GGG GGCGGC GCCAAGAAATCCGCG Rru_A1374 1617840 - 1616935 - | peptidase C14, caspase catalytic subunit p20 TERM 1780 1617067 - 1617037 - G 73 -14.1 -3.14881 | opp_overlap 1617063 GAACTGGCTGACGAA GGCC-GCGACCTTGC CGC GCA-GGTCGCTGGCC AGCAGCCGGTTGGGC Rru_A1375 1620059 - 1617852 - | hypothetical protein Rru_A1376 1622358 - 1620088 - | hypothetical protein TERM 1781 1620846 - 1620862 + g 80 -9.3 -4.2828 | overlap 1620841 GGGTTTTGCGCCGCG CCGGGCC GCC GGCCGGG TTTTCGTGACTGGCC Rru_A1377 1624544 - 1622364 - | hypothetical protein TERM 1782 1622427 - 1622474 + g 100 -2.2 -5.75478 | gap 3, overlap 1622428 1622454 ACCATCTATCTTTTT TGTGTTCTGT-CCTTTCAGGGCG TAGTC CGCC-TGAAAGGAATAG-GCGCG TTTTTTTCTGTCCTT TERM 1783 1623780 - 1623800 + g 71 -3.3 -4.65263 | CAGCGACCAGCCCCA TTCAACGAT CTC GTCCTTGAA TTTCTTTTCCGAGCT TERM 1784 1625011 - 1624985 - R 100 -13 -5.41143 | GAGGGTTGAAAAAAA CCGCCACCCC ACGAGAG GGGATGGCGG GGAGGGAGGGCGGGA Rru_A1378 1626802 - 1625036 - | phosphotransacetylase TERM 1785 1625923 - 1625933 + g 81 -8.2 -4.57073 | overlap 1625917 CGAGCAGCAGGCAGC GGGC GAT GCCC TTTTTGGCGCAGATC Rru_A1379 1628028 - 1626802 - | acetate kinase Rru_A1380 1629300 - 1628125 - | acetyl-CoA acetyltransferase Rru_A1381 1630851 - 1629403 - | Short chain fatty acid transporter Rru_A1382 1631549 - 1630893 - | butyryl-CoA:acetate CoA transferase Rru_A1383 1632207 - 1631554 - | acetate CoA-transferase TERM 1786 1632965 - 1632985 + G 73 -12.5 -3.38991 | overlap 1632963 CGCATCGCCGGGATC GGCGACGGC ATC GCCGTCGGC TATTATTCCAAGCGT Rru_A1384 1632653 - 1634506 + | sensory histidine kinase AtoS TERM 1787 1635677 - 1635692 + G 82 -11.8 -4.06055 | opp_overlap 1635672, overlap 1635680 1635681 CCGAAAACATCATTT GCGGCG AGCG CGCCGC TTTCGTTTCCGAACT TERM 1788 1635803 - 1635850 + G 77 -10.6 -3.89346 | opp_overlap 1635764, overlap 1635806 CGCGCAACGGCGGCA ACCGGGCGCGCACGGC-GATTC AACTGG GGATCAGCCGT-CGCGCCCTGC TTTATAAGCTGCAGG TERM 1789 1635806 - 1635847 + G 77 -15.3 -3.01918 | opp_overlap 1635764, overlap 1635803 GCAACGGCGGCAACC GGGCGCGCACGGC-GATTC AACTGG GGATCAGCCGT-CGCGCCC TGCTTTATAAGCTGC Rru_A1385 1634500 - 1635882 + | acetoacetate metabolism regulatory protein AtoC TERM 1790 1636234 - 1636251 + G 71 -12.7 -3.28712 | opp_overlap 1636230 1636234, overlap 1636248 ACTACACCGAACCCA CCGCCGT GCAG ACGGCGG TTCTCGAACCCGGGG TERM 1791 1637187 - 1637143 - g 77 -12.8 -3.62591 | gap 2 CCCAGAACGCCCAAA CCCTGCAGCACCGCAGCGGCCG CAC CGGCCGCGCCGG-AC-GCAAGG GGATCAGCGTGCTTT Rru_A1386 1636167 - 1638200 + | DEAD/DEAH box helicase TERM 1792 1638222 - 1638191 - T 72 -11.6 -3.36273 | opp_overlap 1638201, overlap 1638198 1638201 CCGTCCCAAGACCAA GCAGAAATAAGCCG GGTT CGGCTTATCCCAGC GTGAACCGCGAAACA TERM 1793 1638215 - 1638198 - T 80 -9.9 -4.09818 | opp_overlap 1638201, overlap 1638191 1638201 AAGACCAAGCAGAAA TAAGCCG GGTT CGGCTTA TCCCAGCGTGAACCG TERM 1794 1638212 - 1638201 - T 71 -7.2 -4.15832 | opp_overlap 1638201, overlap 1638198 1638191 ACCAAGCAGAAATAA GCCG GGTT CGGC TTATCCCAGCGTGAA TERM 1795 1638264 - 1638236 - T 93 -15.4 -3.60792 | gap 1, opp_overlap 1638239, overlap 1638239 GCGTGAACCGCGAAA CATCGGCCGGCAT CTCG ATGCCGGCCG-TG TTGCGTGGGTCGGCT Rru_A1387 1638872 - 1638213 - | hypothetical protein TERM 1796 1638239 - 1638262 + g 86 -18.2 -3.09878 | opp_overlap 1638236 1638239 TGAACCGCGAAACAT CGGCCGGCAT CTCG ATGCCGGCCG TGTTGCGTGGGTCGG TERM 1797 1638262 - 1638239 - G 85 -18.2 -2.62667 | opp_overlap 1638239, overlap 1638236 TGAACCGCGAAACAT CGGCCGGCAT CTCG ATGCCGGCCG TGTTGCGTGGGTCGG TERM 1798 1638405 - 1638429 + g 73 -12.1 -3.40403 | overlap 1638399 GTCGAGCGGCAGCCA GGCGATCGCCG TGG CGGTGATCTCC TTGTCGTGGGCCGGG TERM 1799 1640270 - 1640253 - g 77 -9.8 -3.96148 | TTCGGTCACGAGAAA GGCGCC TTCACC GGCGCC ATCGCCCAGCGCAAG Rru_A1388 1639371 - 1640972 + | NifA subfamily transcriptional regulator TERM 1800 1641257 - 1641280 + G 75 -4.4 -4.62783 | gap 1, opp_overlap 1641261, overlap 1641272 CTGGCGCAGGCCGAA GGC-AGGGCGG ATG CCGCCGACGCC TTTTTGAAATACATG Rru_A1389 1641014 - 1641925 + | NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase Rru_A1390 1642479 - 1641922 - | hypothetical protein Rru_A1391 1643198 - 1642476 - | hypothetical protein TERM 1801 1643163 - 1643129 - G 73 -3.6 -4.58395 | gap 2, opp_overlap 1643107 1643132, overlap 1643155 CCGATCCTTCAAAAA GGCGGACCGGGCCCTT ATCGA AAAAGC-CGG-CCACC TGACCTTGATCGTTC Rru_A1392 1644675 - 1643287 - | nitrogenase TERM 1802 1644007 - 1644026 + g 72 -5.7 -4.37886 | gap 1, overlap 1644009 1644010 ATCGTCGATCGTCGT GCTGCCGT GCGAG ACGGC-GC TTTTATCGGGCATCA TERM 1803 1644131 - 1644178 + g 81 -8.4 -4.56597 | gap 1, overlap 1644138 TCCTTCACGTCGCCC GGATTGACCCAGCC-GGTGATCA GAT TGATCTTCAGGCTGGGTTTGCCC TTTTTGGCGAAGGCC TERM 1804 1644138 - 1644171 + g 81 -12.5 -3.8046 | gap 1, overlap 1644131 CGTCGCCCGGATTGA CCCAGCC-GGTGATCA GAT TGATCTTCAGGCTGGG TTTGCCCTTTTTGGC Rru_A1393 1645037 - 1644687 - | nitrogenase Rru_A1394 1646611 - 1645052 - | nitrogenase iron-iron protein, alpha chain nifH 1647487 - 1646660 - | nitrogenase reductase TERM 1805 1647696 - 1647659 - R 100 -13.5 -4.24338 | gap 1, overlap 1647651 AAAAAGACGCCAAAA GCCCCGG-CTTTTCGGGC GGA ACCGGAAAAGACCAGGGC TGGAAAAACATACGG TERM 1806 1647739 - 1647789 + r 70 -10.4 -3.53012 | gap 2, opp_overlap 1647720 1647752 CGGGGGGCGCGGTAC CGTTTGGTACGAAGCGCGGCGCCT CATCC AGGCGCGGCGC--CGTGCCGGCCG TTTAGGGGCGAAGGG TERM 1807 1647778 - 1647752 - R 82 -15.1 -3.14211 | opp_overlap 1647739, overlap 1647720 ACCGTTTGGTACGAA GCGCGGCGCCT CATCC AGGCGCGGCGC CGTGCCGGCCGTTTA Rru_A1396 1649576 - 1647825 - | methyl-accepting chemotaxis sensory transducer Rru_A1397 1650169 - 1650504 + | Sulfate transporter/antisigma-factor antagonist STAS Rru_A1398 1650501 - 1650872 + | response regulator receiver domain-containing protein TERM 1808 1652857 - 1652882 + G 72 -6.7 -4.2349 | overlap 1652858 1652860 TTCCGGCGCCACCAT CCTGGGCGATG GCGC CGTCGCCCTGA TTTTGGATATCGGCC Rru_A1399 1650869 - 1652950 + | CheA Signal transduction histidine Kinases (STHK) TERM 1809 1653385 - 1653361 - g 83 -12.2 -4.15044 | gap 1, opp_overlap 1653370 GCGCCCTGGAAGAAA CGCC-GCGCAT CGGC ATGCGCTGGCG ATCCGATTACATCAC Rru_A1400 1653015 - 1653527 + | CheW protein TERM 1810 1654049 - 1654018 - g 78 -5.9 -4.67038 | overlap 1654020 TGTCGAAAAGCAAAA TATGGATCTGGTC GACCTG AACCAGACCCAGA TGGAGCAGGCCCAGG TERM 1811 1654047 - 1654020 - g 70 -8.5 -3.94465 | overlap 1654018 TCGAAAAGCAAAATA TGGATCTGGTC GACCTG AACCAGACCCA GATGGAGCAGGCCCA TERM 1812 1655161 - 1655104 - g 100 -19.7 -4.56597 | gap 1 CGCCCTGGTCAAAAA GCCGGTGGCGCGCGGCGGGCGGGTCGCC CTC GGCAACCCCGCCGCCGGGCGCAAT-GGC GCCAAGCGCAATGGG Rru_A1401 1653542 - 1655251 + | chemotaxis sensory transducer Rru_A1402 1655260 - 1655799 + | CheW protein TERM 1813 1657373 - 1657346 - g 76 -2.6 -4.95155 | gap 1, overlap 1657347 1657370 CCGATATCAGAAAAA CCGCCGAACT-GG TTT CCGAGATCAGCGC CGCCTGCCGCGAGCA Rru_A1403 1655824 - 1657737 + | methyl-accepting chemotaxis sensory transducer TERM 1814 1657847 - 1657833 - g 72 -4.3 -4.48987 | opp_overlap 1657840 GTGTCACAATCAAAA TCAAG TTGGC CTTGA CCTTCGCGGTCATCG TERM 1815 1658142 - 1658119 - g 73 -3.8 -4.65747 | opp_overlap 1658134, overlap 1658120 1658121 GAAGCTTGAAGAAAA CGCTACCGAT GTTA ATCGGCAGAA CGTCGATATTTTCTC TERM 1816 1659246 - 1659219 - g 76 -2.6 -4.95155 | gap 1, overlap 1659220 1659243 CCGATATCAGAAAAA CCGCCGAACT-GG TTT CCGAGATCAGCGC CGCCTGTCGCGAGCA TERM 1817 1659548 - 1659534 - g 76 -6.4 -4.56597 | CCCCTGCGGGAAAAA CCAAGA CGG CCTTGG CTCGGAAAGTGCATA Rru_A1404 1657814 - 1659649 + | chemotaxis sensory transducer TERM 1818 1660488 - 1660498 + G 77 -6.8 -4.56775 | opp_overlap 1660483 1660484, overlap 1660483 1660485 GCCGCTGAAAGCGGT CGGT ACC ACCG TTTTTCAACGCGAGT Rru_A1405 1659661 - 1660515 + | MCP methyltransferase, CheR-type Rru_A1406 1660519 - 1661610 + | two component CheB methylesterase Rru_A1407 1661646 - 1662176 + | CheD, stimulates methylation of MCP proteins Rru_A1408 1663998 - 1662292 - | chemotaxis sensory transducer TERM 1819 1662670 - 1662726 + g 73 -14.2 -3.10012 | TTGATTGGCCAAGCC CTTGACCTCGCCGGCGACGACGGCGA ATCCC TTGCCGGCCTCGCCGGCGCGGGCGGC TTCGATGGTGGCGTT TERM 1820 1664161 - 1664207 + r 100 -18 -4.58663 | gap 1, overlap 1664162 1664162 CAAGGCCCGTCATCA CG-GTGGGCGGGCGGAAAGCC AATCCG GGCTTGCCGCCCGCCCGCGCC TTTTTAAGGAATCAT TERM 1821 1664162 - 1664205 + r 100 -21.7 -2.60508 | overlap 1664162 1664161 AAGGCCCGTCATCAC GGTGGGCGGGCGGAAAGCC AATCCG GGCTTGCCGCCCGCCCGCG CCTTTTTAAGGAATC TERM 1822 1664162 - 1664206 + r 100 -21.5 -3.34716 | gap 1, overlap 1664161 1664162 AAGGCCCGTCATCAC G-GTGGGCGGGCGGAAAGCC AATCCG GGCTTGCCGCCCGCCCGCGC CTTTTTAAGGAATCA Rru_A1409 1665854 - 1664211 - | L-lactate permease TERM 1823 1665603 - 1665591 - G 84 -5.5 -4.9792 | GACCTTATACAAAAA CACCG CGG CGATG ATGATCCAGGCGATT TERM 1824 1665790 - 1665779 - G 79 -3 -5.05116 | CGACAAAGAAGAAAA TGAT GGGA ATCA CCGCGACAAGCGATG TERM 1825 1665877 - 1665892 + r 95 -6.8 -5.42862 | overlap 1665878 CCCGATTTTCATGGA TGCCAG GGCG CTGGCG TTTTTTTAGGCCTGT Rru_A1410 1668780 - 1665898 - | 4Fe-4S ferredoxin TERM 1826 1666013 - 1665992 - G 85 -10.1 -4.24204 | opp_overlap 1665992 1665993, overlap 1665993 GAGCGATAGGGAAAA CCGGCCTGC TGCG ACAGGCCGA TTTCACAGGTTCGAT Rru_A1411 1669448 - 1668777 - | hypothetical protein TERM 1827 1669185 - 1669224 + g 74 -7.6 -4.25104 | gap 1, opp_overlap 1669208 1669211, overlap 1669211 GGCCAACTGGCGCCC GGCCGGCGT-CGTCGGCGC ATA GAGCAGCCGTGCGACGGCC TTTTGCTCCAGCAAC Rru_A1412 1670895 - 1669441 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1828 1670859 - 1670825 - G 77 -13.6 -3.55444 | CGCGGATCGTTCAAA GCCACCCTGGCCTT GCCGGTG AAGGCCAAGGGGGC GGTGGCGGCGGTGTC Rru_A1413 1671641 - 1670892 - | hypothetical protein TERM 1829 1671825 - 1671848 + H 73 -13.8 -2.78395 | opp_overlap 1671821 1671822, overlap 1671816 ATCCTCCCAAAGGCG GCGGCGCCTT GAGG ATGGCGCCGC TCGTTCCGATTTCTT Rru_A1414 1672026 - 1672802 + | GntR family transcriptional regulator Rru_A1415 1672902 - 1673366 + | hypothetical protein Rru_A1416 1673363 - 1673614 + | hypothetical protein TERM 1830 1673688 - 1673708 + T 88 -14 -3.64703 | opp_overlap 1673688 GTCTTCACACGAAAA CAGCCCGG AAGAA CCGGGCTG TTTCGCTGCGGGCAA TERM 1831 1673708 - 1673688 - T 100 -14 -4.34402 | opp_overlap 1673688 GTCTTCACACGAAAA CAGCCCGG AAGAA CCGGGCTG TTTCGCTGCGGGCAA Rru_A1417 1675318 - 1673738 - | thioredoxin-disulfide reductase TERM 1832 1674788 - 1674828 + g 72 -12 -3.59087 | gap 2, opp_overlap 1674802, overlap 1674825 CTGGGCGAAGGGCTC GCCGTTGAGGTAAATGGCCG GCA CGGCCA-TGACCT-GACGGC TTTCGACCTCGTCTT TERM 1833 1674816 - 1674802 - G 75 -11.4 -3.64703 | opp_overlap 1674788 CGCCGTTGAGGTAAA TGGCCG GCA CGGCCA TGACCTGACGGCTTT TERM 1834 1675404 - 1675445 + r 95 -20.1 -2.67501 | overlap 1675396 GACCCTGTTTCGTCT CGCTCCCCCTGGGCCCGAC CGGG GTCGGATCCAGGGGGGACG TGGTCTCGGTGTTTA Rru_A1418 1676021 - 1675458 - | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Rru_A1419 1677640 - 1676249 - | carboxylyase-like protein TERM 1835 1677935 - 1677978 + G 70 -13.2 -3.03124 | gap 1 TGCTTATCGGCGAGG GGTTGGCG-CTGCGCAACGTC CGC GACCTTGCGCGGATGCTGACC TATTCGACGATCGCC TERM 1836 1680385 - 1680371 - g 74 -7.8 -4.258 | TCATCCACGAAGAAA CCAAGG ACT CCCTGG ACGAGGGCACCAAGT Rru_A1420 1677877 - 1681674 + | NADH dehydrogenase (quinone) TERM 1837 1681876 - 1681891 + G 74 -2.5 -4.77036 | opp_overlap 1681876, overlap 1681876 CCTAGTGCCCGAGAA CGCCA ATCTGG TGGTG TTTTTGATGGTGCCG TERM 1838 1682453 - 1682465 + G 78 -10.5 -4.12188 | TTGTTCTTCCCCAAT GGCCC CGA GGGCC TTTTCGGGCTGGTGG TERM 1839 1682558 - 1682572 + G 72 -4.3 -4.54047 | overlap 1682542 1682554 GGCCGGATGCGCATC GATCA GGCGG TGATC TTTTATCTGAAATGG Rru_A1421 1681667 - 1682638 + | membrane bound hydrogenase subunit mbhM Rru_A1422 1682651 - 1683079 + | NADH ubiquinone oxidoreductase, 20 kDa subunit Rru_A1423 1683089 - 1683589 + | 4Fe-4S ferredoxin, iron-sulfur binding Rru_A1424 1683586 - 1684104 + | NADH dehydrogenase (ubiquinone), 30 kDa subunit Rru_A1425 1684101 - 1685186 + | ech hydrogenase subunit E TERM 1840 1685244 - 1685275 + F 84 -10.9 -4.10429 | gap 1, opp_overlap 1685244 GTTTTTCTTGATAAA TCCCCGCGATGGCG ATGAA CGCT-TCGTGGGGA TTTTGCCGAGTCCTT TERM 1841 1685401 - 1685347 - f 79 -14.9 -2.87344 | opp_overlap 1685335, overlap 1685391 CATCTGGCCGACAGA CGGGGCCGGGCTTTTTGTCGCTTAC TCGGC GCCAGGGGCAAAAGGCCCGGCCCGG TCTGAAGGGCGACGA Rru_A1426 1685637 - 1686209 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1842 1686722 - 1686765 + G 72 -13 -3.11634 | opp_overlap 1686718 ATTACGACAAACCTT GCGCTTGGCTTGCCGCGTCG CTGA CGCCGCGTCGGGTGAAGCGC TTGGGTGATCTGGGA Rru_A1427 1686229 - 1688148 + | carbon-monoxide dehydrogenase, catalytic subunit TERM 1843 1688163 - 1688190 + F 70 -10.5 -3.45784 | opp_overlap 1688160, overlap 1688157 1688161 1688164 AGACCTTAACGACCC CGGGGCGGGGA AGTTGA TCCTCGCCCCC TCTCTTTCTTATCGG TERM 1844 1688164 - 1688189 + F 72 -14 -2.66748 | opp_overlap 1688160, overlap 1688157 1688163 1688161 GACCTTAACGACCCC GGGGCGGGGA AGTTGA TCCTCGCCCC CTCTCTTTCTTATCG Rru_A1428 1688216 - 1689007 + | cobyrinic acid a,c-diamide synthase Rru_A1429 1689007 - 1689207 + | hypothetical protein Rru_A1430 1689204 - 1689551 + | hypothetical protein Rru_A1431 1689689 - 1690357 + | Crp/FNR family transcriptional regulator Rru_A1432 1691244 - 1690354 - | nicotinate-nucleotide pyrophosphorylase [carboxylating] TERM 1845 1691054 - 1691037 - G 71 -12.7 -3.21747 | TCACGGTATCATCAA GCAGCGC GAAG GCGCTGC GGGCGCAGCCGAGGC Rru_A1433 1692839 - 1691241 - | L-aspartate oxidase Rru_A1434 1693875 - 1692844 - | quinolinate synthetase TERM 1846 1695246 - 1695265 + r 77 -3.4 -5.00616 | opp_overlap 1695234, overlap 1695247 CCACGCCCCCGTGAG GGAGCGAC GCGC GTCGCCCA TTTTTTGGCCCAGGC Rru_A1435 1697498 - 1696161 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 1847 1696811 - 1696823 + g 79 -2.6 -5.00616 | opp_overlap 1696785 CATGGGCGTGCTCGA TGCG GCCGA CGCG TTTTTTCACCGCGCC TERM 1848 1696881 - 1696868 - G 70 -2.3 -4.59773 | CCTCATGGCCAAAAA GTTCG CTTT CGATC ACCGTTTCGGGCAGG TERM 1849 1697107 - 1697121 + g 72 -7 -4.19238 | overlap 1697105 GCCGCCTCGGCGGCG CGGCGC AAG GCGCGG TTTTCCAGTTGCAGG Rru_A1436 1699348 - 1697495 - | histidine kinase TERM 1850 1698865 - 1698835 - G 73 -11.1 -3.64703 | gap 1, opp_overlap 1698862 GTCGGGCGATGTAAA GCCCCGGGCGATGG CTGA CCGT-GCCCAGGGC GAAATGCTCGGTCGC Rru_A1437 1699627 - 1700970 + | C4-dicarboxylate transporter DctA TERM 1851 1700994 - 1701026 + F 100 -22.8 -4.25104 | opp_overlap 1700985 TAAGGAGTCGCGTCG CGCCGCCGTGGGGA TGCCC TCTCCACGGCGGCG TTTTCATAAGGGGCC Rru_A1438 1701111 - 1701632 + | sigma-24 (FecI) TERM 1852 1701659 - 1701642 - f 74 -3.3 -4.77173 | overlap 1701643 CCCTGAGAAAACAAA TCCACCC GGTG GGGTAGG GGATCGGGGGGTGCC TERM 1853 1702455 - 1702417 - g 85 -14.4 -4.07568 | opp_overlap 1702429, overlap 1702400 CGGTGGTGGGCAAAA CCGCCGTGGGGGCGATCG ACA CCTTCGACGCCACGGCGG TGACCGGCTGGCGGC TERM 1854 1702643 - 1702671 + G 76 -6.6 -4.51174 | overlap 1702633 CCTGACCGGCACCTT GCCCGTTCGCAT GACCA AGGTGGGCGGGC TTTTGGTTGTGCTGC Rru_A1439 1701705 - 1702691 + | putative FecR TERM 1855 1703792 - 1703773 - g 73 -10.6 -3.64703 | overlap 1703774 GCCCGCTGATCGAAA GCGGCCGC CTGC GCGGCCGG CTGGTCGCCGCCTAT TERM 1856 1703948 - 1703963 + G 70 -2.4 -4.65916 | CGATCACGCCTCGCG CGCCGG CATC CCGATG TTTTATTCCGATGGC Rru_A1440 1702830 - 1705313 + | TonB-dependent siderophore receptor Rru_A1441 1705853 - 1705410 - | MarR family transcriptional regulator TERM 1857 1705751 - 1705736 - G 81 -7.5 -4.65747 | CAAGGGCGAAGAAAA CCGGC AGATAG GCCGG AGCGATGCCATGCGG TERM 1858 1706211 - 1706221 + G 79 -4.6 -4.77157 | overlap 1706183 GCTTGCTGATCCTTG TGCC GGC GGCG TTTTTCCTGGCTTGG Rru_A1442 1705925 - 1706404 + | putative lipoprotein Rru_A1443 1707355 - 1706399 - | hypothetical protein TERM 1859 1709742 - 1709716 - g 70 -10.8 -3.55563 | overlap 1709702 1709703 AGCCGAGCGGGGAAA CGTCATCGGCCC CGC GCGCCGATTACG ATGAATGCCTAGCCT Rru_A1444 1707876 - 1709765 + | ribonucleotide-diphosphate reductase subunit alpha nrdF 1709777 - 1710853 + | ribonucleotide-diphosphate reductase subunit beta Rru_A1446 1710983 - 1711480 + | hypothetical protein TERM 1860 1711559 - 1711516 - T 100 -24.7 -4.28994 | gap 1, opp_overlap 1711531 GATGATCGATGAAAA CACCGCCCCCGCGAAGCGCC GACAA GGCGCTTT-CGGGGGCGGTG CCGTGACCGCCTTCC TERM 1861 1711570 - 1711607 + T 70 -10.6 -3.54424 | gap 1, opp_overlap 1711593 CGGTGCCGTGACCGC CTTC-CGCCTGCGGC CCGCTTAAA GCCGCCGGCGTGAAG TTTGGGGCGCTCAGG Rru_A1447 1713333 - 1711618 - | arsenite-transporting ATPase TERM 1862 1711699 - 1711681 - G 78 -16 -3.14344 | CACCCGGGCGATGAA CGGCGCCT CAT AGGCGCCG CGCTGGCGCAGCAGC TERM 1863 1712454 - 1712411 - G 81 -15 -3.61178 | opp_overlap 1712412, overlap 1712412 GGCAGGGACGGGAAA GCGGCGGCGGGGGCGGGGCC GGCG GGCGTGGCCTCCGCCGCCGT GTCTGCGGCGATCTG TERM 1864 1712453 - 1712412 - G 87 -18.5 -2.76492 | opp_overlap 1712412, overlap 1712411 GCAGGGACGGGAAAG CGGCGGCGGGGGCGGGGCC GGCG GGCGTGGCCTCCGCCGCCG TGTCTGCGGCGATCT TERM 1865 1712412 - 1712453 + g 100 -22.9 -2.87683 | opp_overlap 1712411 1712412 GCAGGGACGGGAAAG CGGCGGCGGGGGCGGGGCC GGCG GGCGTGGCCTCCGCCGCCG TGTCTGCGGCGATCT TERM 1866 1713201 - 1713221 + g 93 -15.5 -4.11484 | GATTGGAGGCCGGAT CGGTGCTGA CGA TCAGCACCG TTTTGCCGGCTTCGG Rru_A1448 1713886 - 1713344 - | arsenical resistance operon trans-acting repressor ArsD Rru_A1449 1714959 - 1713883 - | bile acid:sodium symporter TERM 1867 1714967 - 1715019 + r 100 -22 -3.74693 | gap 1, overlap 1714968 GACATCATCTCTCTC CCGCCAGATCCCCTCCGCCGCGTCG GGGG CGACG-GGCGGAAGGGGTCCGGCGA TTTGCTCGCATCGAA TERM 1868 1714968 - 1715018 + r 100 -25.5 -2.84602 | gap 1, overlap 1714967 ACATCATCTCTCTCC CGCCAGATCCCCTCCGCCGCGTCG GGGG CGACG-GGCGGAAGGGGTCCGGCG ATTTGCTCGCATCGA TERM 1869 1715062 - 1715039 - R 100 -13.8 -5.08824 | opp_overlap 1715052 CTCGCATCGAAAAAA GCGTCACCCG GGAC CGGGGGACGC GGGGATCAGAGCACG Rru_A1450 1716021 - 1715068 - | ArsR family transcriptional regulator TERM 1870 1715402 - 1715352 - G 72 -6.7 -4.18161 | gap 1, opp_overlap 1715368, overlap 1715343 CACAAACCGTGAAAA CGAAATCCAGGGTCG-GGGCGCCG GGAG CGGCGAATTCATCCCAGGATTTCG AACGCAGGGTTTCGG TERM 1871 1716121 - 1716111 - H 71 -8.2 -4.07568 | TCGCCGCTGTCAAAA CGCC AAG GGCG GCGATGGTGAACAGG TERM 1872 1716572 - 1716583 + G 77 -3.6 -4.72986 | overlap 1716564 CATGACGATCTTGGG CGCC AGGA GGTG TTTTTGGTGCCGATC Rru_A1451 1716317 - 1716646 + | hypothetical protein TERM 1873 1716661 - 1716719 + T 85 -16 -3.13589 | gap 2, opp_overlap 1716654 1716653, overlap 1716660 1716662 1716698 GAGACAATGCCCGTC GG-GGCCTTCGA-GCGGCGCGCGGGGCC CCCCT GGTCTCGCGCGCCGCATCAAAGCCGGCC GCTTTTTTTTTAAGT TERM 1874 1716662 - 1716720 + T 71 -7.5 -4.2536 | gap 4, opp_overlap 1716654 1716653, overlap 1716660 1716661 1716698 AGACAATGCCCGTCG GGGCC---TTCGA-GCGGCGCGCGGGGCC CCCCT GGTCTCGCGCGCCGCATCAAAGCCGGCCG CTTTTTTTTTAAGTC TERM 1875 1716698 - 1716721 + T 100 -3.1 -6.11644 | gap 1, overlap 1716661 1716662 GGCCCCCCTGGTCTC GCGCGCCG CATCAAAGC CGGC-CGC TTTTTTTTTAAGTCG Rru_A1452 1717361 - 1716729 - | GCN5-related N-acetyltransferase TERM 1876 1716806 - 1716792 - G 71 -12.8 -3.21747 | CCACCCCATCAGCAA GGCGCC GCT GGCGCC TTCAACGCCCATCGG Rru_A1453 1717934 - 1717371 - | Phage tail Collar Rru_A1454 1718493 - 1717957 - | Phage tail Collar TERM 1877 1718380 - 1718362 - G 74 -12.4 -3.53811 | opp_overlap 1718377 GCTATCGCCGCCAAA CACCGTGC CCA GCACGGCG AAAAGCGCCTCGTTC Rru_A1455 1719083 - 1718523 - | Phage tail Collar TERM 1878 1719101 - 1719143 + H 81 -6.3 -4.77157 | gap 1 GAAGGAACCAGATCC CTTGCCGTCGT-GCCTTGTG GGAT TGCGAGGCTACGACAGAAAG TTTTTACTCCATTAG TERM 1879 1719606 - 1719631 + G 74 -12.5 -3.53012 | overlap 1719613 GCACCTTGTGCTTCG GCCGGGCGGGC AGCA GCCTGTTCGGC TTTGGGACGGACCGG TERM 1880 1720109 - 1720127 + G 75 -4.5 -4.67353 | AACCGCTGTTTCCAT CGGGCTT ATGGC AAGACCG TTTTTGCCTGGCTGC Rru_A1456 1719350 - 1720312 + | AraC family transcriptional regulator TERM 1881 1720390 - 1720426 + T 70 -9.9 -3.55444 | GTCGCCTATGGCTTC CGCCTTCCGACCTCCAG GCG CAGGGGGCCGAACGGCG TTTCGACCGTGCGGC Rru_A1457 1721393 - 1720380 - | O-methyltransferase family protein TERM 1882 1721120 - 1721077 - G 84 -13 -4.02022 | gap 1 CGCAACCAGGACAAA CCGGCGAGCATC-GGCCGCAG GGA CAGCGGCCCGTCGCTGGCCAG ATAGGTCGCGCCTTC Rru_A1458 1723492 - 1721408 - | TonB-dependent receptor TERM 1883 1723189 - 1723160 - G 75 -2.7 -4.7497 | gap 1, opp_overlap 1723166 GTCATTGACGAAAAA GCCGAC-CGGGTCT TGT AGGGCCGTGTTGGC GCTGGTCATGCCGCG TERM 1884 1723466 - 1723453 - G 93 -9.5 -4.89477 | GGCCGAACAACAAAA CGCCG AGGG CGGCG ACGCGGGGAGAGCGG Rru_A1459 1724778 - 1723489 - | major facilitator transporter TERM 1885 1723663 - 1723633 - G 100 -14.7 -4.72986 | gap 1 CACCCCGAGCAAAAA CCCGGTGGCCGCCC CATA GGGC-GCCACGGGG GAGATCTGATGCAGG TERM 1886 1723713 - 1723729 + g 73 -13.7 -3.14132 | opp_overlap 1723704 1723707 CCAAAGCCAGCCCGG CGCCCTG GGC CAGGGCG TTGATCCCCGCGACC TERM 1887 1724524 - 1724509 - G 72 -11.8 -3.58037 | overlap 1724500 1724492 CAGCAAGGCGGGAAA GGCCGC CGCC GCGGCC AGGGCGATCAGGATC TERM 1888 1725612 - 1725629 + G 77 -5.5 -4.58308 | gap 1, overlap 1725611 GGTTGTGCCGGGATG GCGGATCG CAC CGG-CCGC TTTATTTCGTTCATC TERM 1889 1726703 - 1726744 + G 86 -7.9 -4.87665 | overlap 1726707 1726708 CGGCGGCTGGGCCTG GAACGCGGCGATCCGCTGG CCGA TCGGCGGATGGTCGATTTC TTTTTGTCGGTGCCG TERM 1890 1726707 - 1726740 + G 86 -7.3 -4.97405 | overlap 1726703 1726708 GGCTGGGCCTGGAAC GCGGCGATCCGCTGG CCGA TCGGCGGATGGTCGA TTTCTTTTTGTCGGT TERM 1891 1726708 - 1726739 + G 70 -10.8 -3.56816 | overlap 1726707 1726703 GCTGGGCCTGGAACG CGGCGATCCGCTGG CCGA TCGGCGGATGGTCG ATTTCTTTTTGTCGG Rru_A1460 1725203 - 1727107 + | asparagine synthase Rru_A1461 1728892 - 1727222 - | 2-isopropylmalate synthase TERM 1892 1727613 - 1727634 + g 72 -5.7 -4.37658 | opp_overlap 1727608, overlap 1727608 1727606 ATCGACCAGATCATC GCGGCGGTG ATCT CCTTGCCGC TTTTCTCGGAGAATT TERM 1893 1728733 - 1728723 - G 79 -6.8 -4.58663 | opp_overlap 1728713 1728730, overlap 1728724 1728727 AGCATGGCGTAAAAA CGCA TCT TGCG CTCGACATCCATCGG TERM 1894 1729743 - 1729761 + G 79 -3 -5.03314 | overlap 1729722 CATGCTCTATATGAG CCGCGCGA CCT TTATGCGG TTTTTTAAGCGTGAA Rru_A1462 1729210 - 1729953 + | AraC family transcriptional regulator Rru_A1463 1730797 - 1729955 - | sulfotransferase Rru_A1464 1731696 - 1730794 - | Hpr(Ser) kinase/phosphatase TERM 1895 1731309 - 1731271 - G 81 -16.7 -3.14132 | gap 1, opp_overlap 1731277 GCCTTTGGCCATCAA GGCTGCCGCCAGGGTCGA TTTG CCGACCCCGGCGGCC-CC GGCTAGCACCACCGC Rru_A1465 1732039 - 1731722 - | hypothetical protein TERM 1896 1732548 - 1732538 - g 75 -4.6 -4.63218 | TCCGCTTCAAGAAAA GCCA TCC CGGC ATCGTCGTGCGGGTG TERM 1897 1732780 - 1732798 + G 73 -3.9 -4.63486 | gap 1, overlap 1732776 TTGATCCTGACCGGA CGC-AACA GTAG TGTTCGCG TTTTGTTCGAGCGAT Rru_A1466 1732186 - 1733130 + | LysR family transcriptional regulator Rru_A1467 1734489 - 1733281 - | acetate kinase Rru_A1468 1735938 - 1734502 - | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase TERM 1898 1736018 - 1735978 - R 74 -6.6 -4.36993 | overlap 1735979 AAGGGCAAAAAAATA GCCTTGCGCTCCGTCGTC GCCAG GACGGCGGAGCGGGTGGG AGGGAAAACGAAAGA Rru_A1469 1737225 - 1736050 - | acetyl-CoA acetyltransferase TERM 1899 1736077 - 1736113 + g 71 -3.4 -4.62069 | overlap 1736077 GACGCAGAGCGCGAT GCCCATGCCGCCGCCG ATGCA CAGCGTCGCCAGGGCC TTTTTCGCGTCACGC TERM 1900 1736503 - 1736463 - G 73 -6 -4.30576 | gap 1, opp_overlap 1736466 1736502, overlap 1736465 CGCTCATCAGCAAAA CCCCGGCGGCGCCGTCG TTAAGCCC CGA-GGCGTTGCCGGCG GTGACCGTGCCATCC TERM 1901 1736663 - 1736673 + g 74 -2.4 -4.72272 | overlap 1736657 1736651 CGTCCCTCGCGCTGG GCGG CGG CGGC TTTTTGCTGCGAGGC Rru_A1470 1737510 - 1737229 - | hypothetical protein Rru_A1471 1738243 - 1737584 - | butyryl-CoA:acetate CoA transferase Rru_A1472 1738898 - 1738236 - | butyryl-CoA:acetoacetate CoA-transferase alpha subunit Rru_A1473 1739317 - 1739003 - | hypothetical protein Rru_A1474 1740658 - 1739321 - | hypothetical protein Rru_A1475 1742018 - 1740717 - | citrate transporter TERM 1902 1741399 - 1741419 + g 70 -2.5 -4.65747 | overlap 1741393 1741393 GCGCTCTCACCCTTG GCGCC GGTCAGGCCAA GGCGC TTTTCTTCACGCTTG Rru_A1476 1742389 - 1742739 + | PhnA protein TERM 1903 1743026 - 1743012 - g 70 -2.1 -4.59773 | overlap 1743013 CGGCAGGCTGAAAAA CTGAC CCGGT GTCAA ATCACCCATCTCGGT Rru_A1477 1742973 - 1743713 + | hypothetical protein Rru_A1478 1743710 - 1744702 + | Hpr(Ser) kinase/phosphatase TERM 1904 1745535 - 1745570 + G 80 -14 -3.64703 | opp_overlap 1745535, overlap 1745536 TCGCGCCCGAAGTCA TCGCCGTCTCCCCG CGACTGGC CGGTGAGACGGCGG TTTCCGTCACCCGGG TERM 1905 1745536 - 1745569 + G 75 -15.3 -2.78679 | opp_overlap 1745535, overlap 1745535 CGCGCCCGAAGTCAT CGCCGTCTCCCCG CGACTGGC CGGTGAGACGGCG GTTTCCGTCACCCGG TERM 1906 1745916 - 1745893 - g 74 -7.4 -4.28994 | gap 1, overlap 1745894 CATCACCGAGGAAAA CCCGCTGCTGC GTG GCAGC-GCGAA CTGAGGATGGGCCTG Rru_A1479 1744859 - 1745920 + | hypothetical protein TERM 1907 1746089 - 1746136 + G 73 -11 -3.65351 | gap 1 TTGGGCAAGCCCTGC GCCGCCACCGCGTCGCC-CTGGC CCT GCCCGTGGCGGGGCGGACGCCGC TTTCCCTGGCCCTGC Rru_A1480 1745923 - 1747107 + | hypothetical protein TERM 1908 1747544 - 1747566 + G 83 -13.4 -3.86897 | overlap 1747556 GTATGGCCAGGGCCG CGCTCAGGCC GCC GCCCTGAGCG TTTATGGGCGCTGGG TERM 1909 1747556 - 1747584 + G 85 -7.4 -4.74103 | gap 1, overlap 1747544 CCGCGCTCAGGCCGC CGCCCTGAGCGTT TATG GGCGCT-GGGGCG TTTTTGGCTTGGGCA TERM 1910 1747629 - 1747650 + G 79 -2.9 -5.00616 | overlap 1747630 1747630 1747633 ATCCTTGGTGTTCCC TCGGACTGG GCGG TCGGTCTGG TTTTTTCCGCCGGAA TERM 1911 1748047 - 1748081 + G 78 -6.3 -4.57569 | gap 1, overlap 1748045 1748044 CGATCCTGGCTTTGG CCGCGCCGATG-GCCG AGCG CGGCGCCTTGTCGTGG TTTTTGGCGGAATGG Rru_A1481 1747104 - 1748486 + | hypothetical protein TERM 1912 1748644 - 1748665 + G 75 -11.5 -3.66908 | GCCCGAACCCTATTG GGCGGCGCT GATC ATCGCCGCC TTCGTTTTCCAAGGC Rru_A1482 1748483 - 1749841 + | undecaprenyl-phosphate galactosephosphotransferase Rru_A1483 1751711 - 1749861 - | asparagine synthase (glutamine-hydrolysing) Rru_A1484 1753440 - 1751716 - | glycosyl transferase WecB/TagA/CpsF TERM 1913 1752179 - 1752163 - G 73 -15.1 -2.94099 | GGCCCCCAGGATATA GGGGCGG AAG CCGCCCC GGCCGGCGCGGGCGA TERM 1914 1753177 - 1753120 - G 80 -17 -2.58544 | gap 2, overlap 1753119 1753141 GCCGACTTCCAGAAC CGCC-CCGCCCAAGGGCAC-GAAGCCGC CAAG GCGGGCCCAGCGCCATTGGGCGATGGCG CGCAGGCGCAAGCTG Rru_A1485 1754894 - 1753437 - | parallel beta-helix repeat-containing protein Rru_A1486 1755856 - 1754891 - | UDP-glucose 4-epimerase TERM 1915 1755377 - 1755397 + g 71 -12.5 -3.25282 | overlap 1755388 1755389 GGCCCAGCGTCCGGG CTGGCGCGC CCA GAGCGCCAG TTGGTGCTCGTTGGT TERM 1916 1755834 - 1755822 - G 70 -10.5 -3.73224 | overlap 1755806 CGACTGCCGATGAAA CCGGC GCC GCCGG TCACCAGAACGCAGC Rru_A1487 1756475 - 1755894 - | polysaccharide export protein Rru_A1488 1756646 - 1757446 + | metallophosphoesterase Rru_A1489 1757528 - 1758883 + | hypothetical protein TERM 1917 1760356 - 1760368 + G 70 -10.5 -3.66018 | GCCCTGGTCGGTTTG CCGCC CTT GGCGG TTATTCCGGTCGTGC Rru_A1490 1758883 - 1761087 + | protein-tyrosine kinase Rru_A1491 1761077 - 1761784 + | hypothetical protein Rru_A1492 1763175 - 1761769 - | hypothetical protein Rru_A1493 1764326 - 1763172 - | UDP-N-acetylglucosamine 2-epimerase TERM 1918 1763984 - 1763998 + g 73 -12.8 -3.4678 | GGAAGCCGGCCAGGG CGGCGC CCA GCGCCG TTGTCGTGTCGCCCT TERM 1919 1764627 - 1764655 + G 72 -11.5 -3.54183 | overlap 1764641 TGTGGCTGCGCATCG CGCCGCCGCCCCC CCC GCCGACGGCGGCG GTTTTTCTGGTGGCG TERM 1920 1764641 - 1764656 + G 100 -11.8 -4.91109 | overlap 1764627 GCGCCGCCGCCCCCC CCGCCG ACGG CGGCGG TTTTTCTGGTGGCGA Rru_A1494 1764386 - 1765768 + | hypothetical protein TERM 1921 1766973 - 1766985 + G 73 -6.2 -4.4078 | CCTGATGTCGCTTTC GGGC ATGGC GCCC TTTTGGTTGGCGGCC Rru_A1495 1765765 - 1767090 + | hypothetical protein TERM 1922 1767273 - 1767306 + G 72 -14.5 -2.77899 | gap 1, overlap 1767286 1767302 CATGGGGCGCGGACC GCCTGCGTCGCCCGCG CCG CGCTGGTGGCGC-GGC TGCTTGATCGGCCGA Rru_A1496 1767087 - 1768106 + | glycosyl transferase, group 1 TERM 1923 1768131 - 1768091 - f 100 -20.3 -3.50393 | opp_overlap 1768088 1768109 1768111 GGCGATGGCACACAA GGCGGGGGGGCGATGACGG CGC CCGGCACGGCCCCCGCGCC CGCCTCTTCTTCGGC TERM 1924 1769338 - 1769387 + G 79 -2 -5.03747 | gap 2, overlap 1769380 CGCCGGGCGCGTTCT GCTTGATG-GC-CGACCCGTTCGC GCCG GCGAATGGGACGAGTACCGCCAGC TTTTTTCGGCGGTTT Rru_A1497 1768103 - 1769776 + | cyclic peptide transporter TERM 1925 1769771 - 1769758 - T 74 -5.9 -4.57073 | CATCGTTTTGAAAAA CGGCA AGCT CGCCG GCTAAGGCGCCCGTC Rru_A1498 1770048 - 1769785 - | hypothetical protein TERM 1926 1769914 - 1769938 + g 77 -11.3 -3.89346 | opp_overlap 1769900 ATCCACGCGGGCCCA GGCGCCGGGGG GAA CCCTGGGCGTC TTTCTCCGATCAAAA TERM 1927 1769971 - 1769955 - G 82 -6.5 -4.72272 | opp_overlap 1769954, overlap 1769958 TTCTCCGATCAAAAA GATCGCC TTC GGGGATC ATCGATTCCAGCACG Rru_A1499 1770608 - 1770045 - | Ferritin and Dps TERM 1928 1770285 - 1770267 - G 78 -16 -3.08133 | CAGGGAGTGACCGAA GGCCGCCA GAC TGGCGGCC ACGGCCAAAAGCTGC TERM 1929 1774795 - 1774853 + G 93 -19.6 -2.55253 | gap 2, opp_overlap 1774775, overlap 1774843 CGCCTGCTGCCCCCG CCGGTGGGGCC-GGCGGCGGC-GCGG CTGCCAGCC CCGCCGCCGTCGCCAGGCCCCGGTGG TCCGTTGCCCTTGAT TERM 1930 1775465 - 1775425 - g 72 -11.8 -3.5394 | gap 1 AAACTTGGCGTGAAA TCCCTGCCGGCCTTGGTCC GTCT GGCCCA-GGCCGCCAGCGA CGGTGAGGTCGGCGA Rru_A1500 1771039 - 1775490 + | Signal transduction histidine kinase (STHK) with CheB and CheR activity Rru_A1501 1776023 - 1776337 + | transport-associated protein TERM 1931 1776510 - 1776541 + G 87 -17.2 -3.38812 | opp_overlap 1776482, overlap 1776513 1776517 TTTGAGCGGCGGCGC GATCGGCGCCGGCG CCGG CGCCGGTGCCGGCC TGTTGTTCGGCGCGC TERM 1932 1776513 - 1776543 + G 81 -14.7 -3.61398 | gap 1, opp_overlap 1776482, overlap 1776510 1776517 GAGCGGCGGCGCGAT CGGCGCCGGCGCCG GCGC CGGTGCCGGC-CTG TTGTTCGGCGCGCCG TERM 1933 1776517 - 1776540 + G 80 -17.4 -2.63073 | opp_overlap 1776482, overlap 1776510 1776513 GGCGGCGCGATCGGC GCCGGCGCCG GCGC CGGTGCCGGC CTGTTGTTCGGCGCG Rru_A1502 1776412 - 1776654 + | hypothetical protein TERM 1934 1776716 - 1776685 - T 100 -18 -3.72576 | opp_overlap 1776686, overlap 1776669 1776686 GCTGCCCTCATGAAA GCGGGGCTGGTGGA TGAT CCCACCAGCCCCGT TTTGTCTTGCGCCGC TERM 1935 1776715 - 1776686 - T 100 -21.5 -2.83403 | opp_overlap 1776686, overlap 1776669 1776685 CTGCCCTCATGAAAG CGGGGCTGGTGGA TGAT CCCACCAGCCCCG TTTTGTCTTGCGCCG TERM 1936 1776686 - 1776715 + T 100 -20.8 -4.66537 | opp_overlap 1776669 1776686 1776685 CTGCCCTCATGAAAG CGGGGCTGGTGG ATGATC CCACCAGCCCCG TTTTGTCTTGCGCCG TERM 1937 1776747 - 1776803 + T 73 -10 -3.57406 | gap 1, overlap 1776749 GCGGCGTCGCTGTCT CTTTG-CCCTGCGCCGCGCAGCGTCGA TGCC TCTGCCCTGCGCCGCGCAGCGTCGATG TCTTTGTCATGCGCC TERM 1938 1776749 - 1776801 + T 72 -11.2 -3.36228 | gap 1, overlap 1776747 GGCGTCGCTGTCTCT TTG-CCCTGCGCCGCGCAGCGTCGA TGCC TCTGCCCTGCGCCGCGCAGCGTCGA TGTCTTTGTCATGCG Rru_A1503 1777892 - 1776810 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 1939 1777951 - 1777993 + r 70 -10.7 -3.44622 | gap 2, opp_overlap 1777951 1777956, overlap 1777956 TTATCAAGCGACAGA GCAAATC-CCG-AGCGCTCTG GAG CAGAGCGCGACGACGATTTGC TTGATTATCAAGATC TERM 1940 1777993 - 1777951 - R 70 -12.9 -2.95884 | gap 2, opp_overlap 1777951 1777956, overlap 1777956 TTATCAAGCGACAGA GCAAATC-CCG-AGCGCTCTG GAG CAGAGCGCGACGACGATTTGC TTGATTATCAAGATC TERM 1941 1778073 - 1778017 - R 87 -17.2 -3.0792 | opp_overlap 1778038 1778059, overlap 1778023 1778024 1778071 CAAGATCCTAGGCAA GCCAAAGCGGGGAGCG-CGGGACCGGGG GCC CCCCGGTCTCGTCGC-CCCCATATAGGC ATCGTCCCGGCGCGG TERM 1942 1778067 - 1778023 - R 95 -16.4 -3.76952 | opp_overlap 1778038 1778059, overlap 1778017 1778024 CCTAGGCAAGCCAAA GCGGGGAGCG-CGGGACCGGGG GCC CCCCGGTCTCGTCGC-CCCCAT ATAGGCATCGTCCCG TERM 1943 1778066 - 1778024 - R 95 -19.9 -2.8585 | opp_overlap 1778038 1778059, overlap 1778023 1778017 CTAGGCAAGCCAAAG CGGGGAGCG-CGGGACCGGGG GCC CCCCGGTCTCGTCGC-CCCCA TATAGGCATCGTCCC TERM 1944 1778059 - 1778117 + r 71 -7.3 -4.25104 | gap 2, opp_overlap 1778024 1778023 1778017 1778071, overlap 1778076 GCCCCCCGGTCTCGT CGCCCCCATATAG-GCATCGTC-CCGGCG CGG TGCCAGCGACGAGGCGTTTTCAGGGGGCG TTTTGCTCGCCAAGC TERM 1945 1778076 - 1778104 + r 71 -7.9 -4.08064 | opp_overlap 1778071, overlap 1778059 CCCCCATATAGGCAT CGTCCCGGCGCGG TGC CAGCGACGAGGCG TTTTCAGGGGGCGTT Rru_A1504 1778896 - 1778108 - | hypothetical protein Rru_A1505 1779989 - 1778928 - | allophanate hydrolase subunit 2 TERM 1946 1779729 - 1779689 - G 78 -10.1 -4.07568 | overlap 1779692 CGCCGCGCCGCAAAA GATGGCTGCGCCCGCCGGC CAA GCGTTCGGGCGCCGCCCCC GGACGATGGAGAAGC TERM 1947 1779757 - 1779743 - G 73 -12.8 -3.37796 | CCGGACGATGGAGAA GCGGCG CGC CGCCGC AAAAGGCCAGCCGCA Rru_A1506 1780717 - 1779986 - | hypothetical protein TERM 1948 1780614 - 1780586 - G 70 -10.9 -3.54741 | overlap 1780587 GATCAGCCCGGGAAA CTCGGCGGCCTGG GCG CGAAGCCGCCGAT GCAGGGCCTGGACCC Rru_A1507 1781570 - 1780803 - | short-chain dehydrogenase/reductase SDR Rru_A1508 1781723 - 1783369 + | FAD dependent oxidoreductase Rru_A1509 1783843 - 1783385 - | hypothetical protein TERM 1949 1783731 - 1783753 + g 72 -13.4 -3.1634 | overlap 1783717 1783725 ATGATTTCGCCGCGG GCGGCGATGA CAT TCTTCGCCGC TTCCATGGTTTCGCC Rru_A1510 1784020 - 1784673 + | PRC-barrel TERM 1950 1785043 - 1785007 - g 79 -4.9 -4.73613 | opp_overlap 1785010 1785029, overlap 1785010 1785012 CCATGACGAACAAAA GAACGGCATCGTCCGCA AGG CGCGGCCGCTGCGGCTG TTTCGCAACGATCCC TERM 1951 1785040 - 1785010 - g 81 -8.8 -4.46587 | opp_overlap 1785010 1785029, overlap 1785007 1785012 TGACGAACAAAAGAA CGGCATCGTCCGCA AGG CGCGGCCGCTGCGG CTGTTTCGCAACGAT TERM 1952 1785541 - 1785529 - g 70 -6.2 -4.17048 | GCTGCTGGAAAACAA GGCG TGCTT CGCC GAGGCCGGCGACCGA Rru_A1511 1784681 - 1785760 + | glycosyl transferase family protein Rru_A1512 1786025 - 1786315 + | ISSo9, nucleotidyltransferase domain-containing protein Rru_A1513 1786312 - 1786719 + | hypothetical protein TERM 1953 1786856 - 1786842 - T 83 -4.3 -5.02323 | opp_overlap 1786842 CCACTAGAAATAAAA GATGA TATAT TCATC GATTTTCTGGCGGAT TERM 1954 1787270 - 1787280 + T 77 -8.2 -4.3739 | AGTGCCCGGATGGCT CCGC AAA GCGG TTTTCTACAGAGATC TERM 1955 1787628 - 1787603 - T 72 -11.3 -3.33696 | gap 1, opp_overlap 1787591 1787603 CTTGGGCCTAACCAA GCTGCA-TGAGT TTC ACTCAATGCAGC TTGGTATAACACCTT TERM 1956 1788708 - 1788722 + T 72 -2.9 -4.77173 | opp_overlap 1788708 TCACCAACACAACAG CAATA GTAAA TATTG TTTCTTTTGTAAAAA TERM 1957 1788832 - 1788847 + T 91 -4.7 -5.54907 | opp_overlap 1788812, overlap 1788818 GGCGGTAGCAACCGC GGTAG CAACCT CTACC TTTTTGTTTTCTGGC Rru_A1515 1789652 - 1789275 - | IS4 family transposase Rru_A1516 1790116 - 1789649 - | transposase Rru_A1517 1790378 - 1791094 + | transposase of ISBst12-like element Rru_A1518 1791101 - 1791517 + | hypothetical protein Rru_A1519 1791529 - 1791729 + | hypothetical protein Rru_A1520 1791953 - 1792159 + | hypothetical protein Rru_A1521 1792689 - 1792483 - | cold-shock DNA-binding protein family protein Rru_A1522 1793609 - 1792965 - | Beta-lactamase-like Rru_A1523 1794496 - 1793708 - | hemerythrin TERM 1958 1794740 - 1794764 + H 100 -17.2 -3.44146 | GTATGGGATCGGACC GGCGAAGGGG GCGCG CCCCTTCGCC TTCCTTGTCGCCGAG TERM 1959 1794875 - 1794897 + G 95 -9 -5.00138 | opp_overlap 1794867 1794870, overlap 1794877 GATGAAAGAGCGCTG CGCCGCCCAG GGG CTGGTCGGGG TTTTTCCTTTGGATA Rru_A1524 1794786 - 1795316 + | nucleoside 2-deoxyribosyltransferase Rru_A1525 1795964 - 1795332 - | nucleoside diphosphate pyrophosphatase Rru_A1526 1796650 - 1796012 - | cobyrinic acid a,c-diamide synthase TERM 1960 1796247 - 1796236 - G 72 -5.8 -4.30576 | opp_overlap 1796235 1796236 GGTTCAGCACCAAAA GCAC CTCG GTGC GTTCCTTGCGGGCAA TERM 1961 1797761 - 1797751 - g 70 -2.4 -4.59414 | overlap 1797742 1797752 1797753 GGAGAACAAGCAAAA GCGC CTG GAGC AGGAATCCCGCGAGG Rru_A1527 1796981 - 1798660 + | putative ABC transporter ATP-binding protein TERM 1962 1798721 - 1798680 - T 100 -24.6 -3.53012 | opp_overlap 1798685, overlap 1798685 TGCGGCTTGGCCAAA GAAAAGGGGGGCGCCGAC GATCAG GTCGGCGCCCCCCTTTTT TGACGTGATCACCTT TERM 1963 1798716 - 1798685 - T 100 -24.5 -4.86731 | opp_overlap 1798685, overlap 1798680 CTTGGCCAAAGAAAA GGGGGGCGCCGAC GATCAG GTCGGCGCCCCCC TTTTTTGACGTGATC TERM 1964 1798685 - 1798716 + T 100 -24.5 -5.06451 | opp_overlap 1798685 1798680 CTTGGCCAAAGAAAA GGGGGGCGCCGAC GATCAG GTCGGCGCCCCCC TTTTTTGACGTGATC Rru_A1528 1799376 - 1798735 - | toluene tolerance TERM 1965 1799474 - 1799424 - H 76 -7.5 -4.53703 | gap 2 AAAATAAGATCAAAA CCAAACTGTTCCCGTCGCGCGCCGA CTG TCGG-GCGCC-CGGCGACGGTCTGG CGGAACCTGGGCAGT Rru_A1529 1799672 - 1800685 + | ArsR family transcriptional regulator Rru_A1530 1800682 - 1801641 + | 5,10-methylenetetrahydrofolate reductase TERM 1966 1804268 - 1804212 - g 85 -7.5 -4.72272 | overlap 1804213 1804214 GCGGTTCAGCAAAAA CGCGCCGGCCGGCCCTCGCGCCGGCCC AAG GCGCCGCCGCTGTGGCCGGCCAATGAT CCGTCCTCCAAAATC TERM 1967 1804266 - 1804214 - g 71 -14.5 -2.65504 | overlap 1804213 1804212 GGTTCAGCAAAAACG CGCCGGCCGGCCCTCGCGCCGGCCC AAG GCGCCGCCGCTGTGGCCGGCCAATG ATCCGTCCTCCAAAA Rru_A1531 1801638 - 1805186 + | methionine synthase (B12-dependent) TERM 1968 1805212 - 1805192 - T 72 -12.5 -3.06796 | opp_overlap 1805193 CCGCATTTGATCCAA GGGCGGGGA TGA TCCCCGCCT TTTGCTGGCGGAGCG TERM 1969 1805193 - 1805211 + T 100 -16 -4.25104 | opp_overlap 1805192 CGCATTTGATCCAAG GGCGGGGA TGA TCCCCGCC TTTTGCTGGCGGAGC Rru_A1532 1806150 - 1805239 - | TPR repeat-containing protein TERM 1970 1805821 - 1805848 + g 95 -6.8 -5.4477 | GGCCGACACCGCCTC CGCCCACAGGCG GTCG CGTTCGGGGGCG TTTTTTTCGGCGTTT TERM 1971 1806692 - 1806746 + G 88 -10.5 -4.37092 | gap 2, overlap 1806717 CGAGGCCGACTTCTC GCGCGCCCGGC-TTGA-CGGCGCGTCG CTG CGTGGCGCCGATCTGCGCCGCGCCCGC TTTTATGGCGCCGAT Rru_A1533 1806345 - 1806890 + | pentapeptide repeat-containing protein TERM 1972 1807882 - 1807895 + G 70 -2.3 -4.58663 | overlap 1807892 CTGCCTGGGCTTTGG CTTCG GCGG CGGGG TTTTTAGCCCCTCCT TERM 1973 1807981 - 1808012 + G 95 -19.5 -2.87564 | CCCGGTTTCGGCGTC GGGCGCCTATGCC CTGATC GGCATGGGCGCCC TGTCTGCGGCGGTGC Rru_A1534 1806881 - 1808464 + | Cl- channel, voltage gated Rru_A1535 1808901 - 1808530 - | plasmid maintenance system antidote protein Rru_A1536 1809079 - 1811385 + | ATP-dependent DNA helicase Rep TERM 1974 1811456 - 1811425 - T 76 -12.3 -3.29324 | gap 1, overlap 1811420 1811428 TTGAGCCAAAGCCAA CACCCCGCCGCCCG GCAAT CAGGCGGCG-GATG ACCATGGCTGGACGC TERM 1975 1811454 - 1811428 - T 76 -15.1 -2.52156 | overlap 1811425 1811420 AGCCAAAGCCAACAC CCCGCCGCCCG GCAAT CAGGCGGCGGA TGACCATGGCTGGAC Rru_A1537 1811913 - 1811569 - | hypothetical protein TERM 1976 1812205 - 1812231 + r 70 -3.7 -4.60255 | opp_overlap 1812194, overlap 1812196 1812199 1812224 AAAGGGTCCGCTTTA CTTCTGTAAAG AGAAG CTTTTCTGAAG TTTTTCAGGACTTGT Rru_A1538 1812721 - 1812236 - | hypothetical protein TERM 1977 1812366 - 1812385 + g 71 -3.4 -4.58395 | overlap 1812368 1812369 TCGACTAGATCGTCC TGGGCCCG GCGG CGGGCGTG TTTTTCACGGATGCG Rru_A1539 1813036 - 1812833 - | molybdenum-pterin binding protein Rru_A1540 1814207 - 1813203 - | LysR family transcriptional regulator TERM 1978 1813968 - 1813930 - G 79 -11.6 -3.78775 | gap 1, overlap 1813931 1813952 TCGGTCAGCAGGAAA CCGGCGCGGCC-GCGCC GACAGA GCCGCAGGCCAAGCCGG CGTTCCAGATCGGCC Rru_A1541 1814272 - 1815615 + | beta alanine--pyruvate transaminase Rru_A1542 1815634 - 1817133 + | methylmalonate-semialdehyde dehydrogenase [acylating] Rru_A1543 1818002 - 1817142 - | putative molybdenum utilization protein ModD TERM 1979 1817573 - 1817614 + g 71 -12.1 -3.29144 | gap 1 CGCCGGCCTGGGCGG CGCGCATGGCCAGAGCCCGG GTG CCGGGAAA-GGCCTTGCGCG TTGTCGCGACCATCG TERM 1980 1818746 - 1818764 + G 77 -13.8 -3.37796 | overlap 1818732 TGGCGATGACGCCGA GGGGGCGC CGG GCGCCCTC TTGTCGATGGTGACC TERM 1981 1819408 - 1819429 + G 72 -11.5 -3.53444 | overlap 1819409 TGGCGGCGGTGTTGC GGCCCCAGG ATAC CCTGGGGCG TTTGGGGGGCGATGA TERM 1982 1819409 - 1819428 + G 72 -15 -2.71924 | overlap 1819408 GGCGGCGGTGTTGCG GCCCCAGG ATAC CCTGGGGC GTTTGGGGGGCGATG TERM 1983 1820201 - 1820222 + G 74 -12.3 -3.61178 | overlap 1820185 1820184 CGGCACCGGCTATTC GGCGCTGAG TTAT CTCAGCGTC TTTCACGTCGATACC TERM 1984 1820504 - 1820535 + G 73 -10.8 -3.64703 | opp_overlap 1820493 CAAGGCCGCGCTGGG GACGGAGTTCGCCG AGGG CGGCGATCTTGGTC TTTCGGTGGGGGCCC Rru_A1544 1818261 - 1820555 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rru_A1545 1821230 - 1820592 - | diguanylate cyclase TERM 1985 1821315 - 1821293 - R 95 -7 -5.31275 | overlap 1821294 CCGCATGACAAAAAA GCGACCTTCT GGG AAAAGGTCGG CGCAGTGTATAGGCT TERM 1986 1821314 - 1821294 - R 76 -10.5 -3.78042 | overlap 1821293 CGCATGACAAAAAAG CGACCTTCT GGG AAAAGGTCG GCGCAGTGTATAGGC Rru_A1546 1822593 - 1821334 - | FAD dependent oxidoreductase TERM 1987 1822080 - 1822121 + g 88 -10 -4.42386 | gap 2, overlap 1822079 1822081 CCAGCTCCAGGCATC GCGCGGCC--GGGCAGGCGC TTTG GCGCAGGCCCCAGGCCGCGG TTTTCTCCATGGCCC TERM 1988 1822081 - 1822120 + g 73 -13.5 -3.2511 | gap 2, overlap 1822079 1822080 CAGCTCCAGGCATCG CGCGGCC--GGGCAGGCGC TTTG GCGCAGGCCCCAGGCCGCG GTTTTCTCCATGGCC TERM 1989 1822810 - 1822852 + G 80 -14.7 -3.44051 | gap 1 GGCGTTGCCGAGATG GCGGCGGCCGATCAGGCGGC GGCC GCCGCC-GGCCGGCCGGGGC TTGTCCTGATGGAGG TERM 1990 1822899 - 1822927 + G 71 -12.3 -3.31726 | overlap 1822898 GGTCCGCGAGATCGC CGCGCGCTGGTCG AAG CGGCCGGTCCGCG TGTTGTGTGGCCCCG TERM 1991 1823687 - 1823697 + G 86 -8.2 -4.72272 | TGCTGGACGATCCCC GGCG CAA CGCC TTTTTGCTGGGGCCG Rru_A1547 1822708 - 1824288 + | hypothetical protein Rru_A1548 1824302 - 1825738 + | malonyl-CoA decarboxylase tig 1826024 - 1827415 + | trigger factor TERM 1992 1827474 - 1827507 + F 100 -17.5 -4.63486 | gap 1, opp_overlap 1827474 GCCTCTGGACAGAGA CGGGGCCCAGGTCC TATGTAT GGACC-GGGCCCCG TTTTCTTGCCCGCCT TERM 1993 1827507 - 1827474 - f 87 -17.5 -2.98823 | gap 1, opp_overlap 1827474 GCCTCTGGACAGAGA CGGGGCCCAGGTCC TATGTAT GGACC-GGGCCCCG TTTTCTTGCCCGCCT Rru_A1550 1827648 - 1828298 + | ATP-dependent Clp protease proteolytic subunit ClpP TERM 1994 1828342 - 1828315 - f 77 -11.2 -3.60627 | CGACGGGACTTTAAA GGGGAAGGGGGC CAAG GTCCGCTTCCCC GGCCCGGCCAAAGGG clpX 1828668 - 1829936 + | ATP-dependent protease ATP-binding subunit TERM 1995 1829939 - 1829978 + F 89 -12.8 -4.07885 | opp_overlap 1829942 1829956, overlap 1829944 CGCCAGCGCCTGATA TCAGCCACCGGGGCAAAG GGCT CTTCGCCCCGGTGTTCGA TTTTGCCCGGCGGTC TERM 1996 1829944 - 1829973 + F 95 -17.9 -3.36823 | opp_overlap 1829942 1829956, overlap 1829939 GCGCCTGATATCAGC CACCGGGGCAAAG GGCT CTTCGCCCCGGTG TTCGATTTTGCCCGG Rru_A1552 1830342 - 1832762 + | Lon-A peptidase TERM 1997 1832864 - 1832899 + F 93 -16 -3.55622 | opp_overlap 1832884, overlap 1832883 GAATTGATTTCGGGG GTCAGGGGCCCGCCAC GCAA GCGGCGGGCCCCGAAC TTTGGGGGGCTTGGC Rru_A1553 1833133 - 1833408 + | histone-like DNA-binding protein TERM 1998 1833474 - 1833446 - T 100 -18.3 -3.72695 | opp_overlap 1833441 ATCCCCTGGATCAAA CCGCGTTAAAGGA GCC CCCTTTAACGCGG AAATGCTGATCTGGA TERM 1999 1833557 - 1833602 + T 100 -12.5 -5.4505 | overlap 1833536 TCGCCGCTCTAGATC TCGTGGGAGGCGGGAGGGATC GTTT GGTCGATCCCGTCTCCCGGGA TTTTTTCTTGCAAAG TERM 2000 1833691 - 1833662 - T 76 -12.9 -3.28712 | gap 1, opp_overlap 1833662 1833668 GCTTTTCGTTTAGAA CCG-CCACGCGATC GGC GATCGCGTGGTCTG CGGGCGGTTAGCTCA TERM 2001 1833779 - 1833808 + T 100 -18.5 -5.14563 | opp_overlap 1833779 CACCAGATAGAAAAA CCCGGCGCGGCCT TGGA GGGCGGCGCCGGG TTTTTTCATAAACCC TERM 2002 1833808 - 1833779 - T 100 -17.8 -5.05601 | opp_overlap 1833779 CACCAGATAGAAAAA CCCGGCGCGGCC TTGGAG GGCGGCGCCGGG TTTTTTCATAAACCC Rru_A1554 1835326 - 1833839 - | methyl-accepting chemotaxis sensory transducer TERM 2003 1835553 - 1835565 + H 74 -6.3 -4.57073 | GCGATGTATTGTATT TGGAA GCA TTCCA TTTTTCGCCCGAATC TERM 2004 1835887 - 1835901 + H 78 -7 -4.62069 | overlap 1835885 1835894 GGGCTGGTCCCAAGG GGCCGG TCG CCCGCC TTTTTCCGCTCGGGG Rru_A1555 1836200 - 1836565 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Rru_A1556 1836556 - 1837113 + | NADH dehydrogenase subunit B Rru_A1557 1837151 - 1837792 + | NADH dehydrogenase subunit C Rru_A1558 1837792 - 1838970 + | NADH dehydrogenase subunit D Rru_A1559 1838967 - 1839593 + | NADH dehydrogenase (ubiquinone) Rru_A1560 1839593 - 1840882 + | NADH dehydrogenase I subunit F TERM 2005 1842357 - 1842378 + G 72 -12.9 -3.10236 | TTAACGTTCTGCATA CCGCCGCCG CCCG CGTCGGCGG TCTTGACCTTGGCTT TERM 2006 1842613 - 1842599 - g 73 -3.5 -4.70659 | GCCTATACGGAAAAA GACGC CACCT ACGTC AATACCGAGGGCCGC Rru_A1561 1840907 - 1842976 + | NADH dehydrogenase subunit G Rru_A1562 1842969 - 1843982 + | respiratory-chain NADH dehydrogenase, subunit 1 Rru_A1563 1844002 - 1844490 + | NADH dehydrogenase subunit I TERM 2007 1844523 - 1844546 + F 89 -10.2 -4.57569 | gap 1, overlap 1844524 TGAACCAACCATGGT GCGGCTCCCCG CTT CGGGG-GCCGG TTTTTCGGGAACTCA TERM 2008 1844524 - 1844545 + F 81 -13.7 -3.3422 | gap 1, overlap 1844523 GAACCAACCATGGTG CGGCTCCCCG CTT CGGGG-GCCG GTTTTTCGGGAACTC Rru_A1564 1844616 - 1845233 + | NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 Rru_A1565 1845233 - 1845541 + | NADH-ubiquinone oxidoreductase, chain 4L TERM 2009 1846831 - 1846847 + G 73 -3.5 -4.63218 | GGCTGGGCATTCTGG CGGCGAC CCT GACGGCG TTTTATTCGACCCGC Rru_A1566 1845549 - 1847480 + | NADH dehydrogenase subunit L TERM 2010 1849012 - 1848963 - g 95 -19.4 -2.80816 | gap 3, overlap 1848965 TTTCCACCTACGAGA CAGCGCTCACCGCCGC--CGGGACC CCC GGTCCCGACGCGGCGGCGT-CGCTG GCCCAGCGCTAAAGG TERM 2011 1849007 - 1848965 - g 79 -16.3 -2.95298 | gap 2, overlap 1848963 TCCACCTACGAGACA GCGCTCACCGCCGCCGGGACC CCC GGTCCCGAC-GCGGCG-GCGT CGCTGGCCCAGCGCT Rru_A1567 1847492 - 1849024 + | NADH dehydrogenase subunit M Rru_A1568 1849045 - 1850508 + | NADH dehydrogenase subunit N TERM 2012 1850971 - 1850995 + G 77 -13.5 -3.54424 | opp_overlap 1850970, overlap 1850974 CGGCGTCAATATCAT CACCGCGCCGG TGA CCGGTGCGCTG TTTCCCGCCCTGGCC Rru_A1569 1850561 - 1851340 + | biotin--acetyl-CoA-carboxylase ligase Rru_A1570 1851460 - 1852233 + | pantothenate kinase Rru_A1571 1852294 - 1853976 + | metallo-beta-lactamase Rru_A1572 1854056 - 1854460 + | methylmalonyl-CoA epimerase Rru_A1573 1854518 - 1855051 + | DNA-3-methyladenine glycosylase I Rru_A1574 1855503 - 1855126 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 2013 1855680 - 1855654 - H 82 -10.9 -3.9941 | gap 1 TCGCCCATAAGGAAA GGGCGGG-TCTC TTGA AAGATCCCGCCC AGCCCCTCGTGCCTC TERM 2014 1855695 - 1855721 + H 72 -13.6 -2.62263 | CAGCCCCTCGTGCCT CGATACCCGGCC TTT GGCCGGGAAGCG TGGTATGAACCGGAT TERM 2015 1855869 - 1855885 + H 72 -12.3 -3.07816 | GGACTTCGCCTCGCA CCGTCGT TAA ACGACGG TTGCCTCCCTAAACC Rru_A1575 1856117 - 1856668 + | hypothetical protein TERM 2016 1856644 - 1856671 + F 70 -9.8 -3.55622 | overlap 1856623 CCAGGCCTGCCGCGA GCATGGGCGGGG TCGT TCCCGCTGATGC TTTGAGCGCCTTGGA TERM 2017 1857817 - 1857854 + G 83 -13.3 -3.88787 | opp_overlap 1857811 CGTGATCAACCTCAA GGTCGGCGACGCCGCCA CCGA TGGCGTCTGCGCCGATC TTTATGGCCGTCTGC Rru_A1576 1856768 - 1858075 + | prolyl-tRNA synthetase TERM 2018 1858102 - 1858114 + F 76 -6.2 -4.59109 | overlap 1858085 1858090 GCGCGGCGCGCGACA CCGG CGAGC CCGG TTTTTCGAAAGTGTG Rru_A1577 1858177 - 1858806 + | ThiJ/PfpI TERM 2019 1859353 - 1859373 + G 70 -8.2 -3.97622 | overlap 1859354 GCACCGTGCCCCGGG TGCGCGCC TATAC GGTGCGCG TTATCTTTTCCATCG Rru_A1578 1858803 - 1860056 + | LolC/E family lipoprotein releasing system, transmembrane protein Rru_A1579 1860049 - 1860807 + | ABC transporter component TERM 2020 1861187 - 1861175 - g 85 -10.5 -4.2018 | opp_overlap 1861138 1861175 AAACGGGCAAAACAA CCCGC GCG GCGGG TTTTTATCGCCACCT TERM 2021 1861175 - 1861187 + G 100 -10.5 -4.83169 | opp_overlap 1861175, overlap 1861138 AAACGGGCAAAACAA CCCGC GCG GCGGG TTTTTATCGCCACCT Rru_A1580 1860829 - 1861266 + | GCN5-related N-acetyltransferase Rru_A1581 1861313 - 1861765 + | GCN5-related N-acetyltransferase TERM 2022 1863411 - 1863398 - g 77 -3.8 -4.84359 | overlap 1863399 CGATCTGCAGAAAAA CGAC GAGATG GTCG CCCGCCTGCTTGATA TERM 2023 1864108 - 1864131 + G 83 -12.4 -4.08216 | CGGGCAAGCGCGGCA CCTCGGAGGC CAAG GCCTCGGAGG TTTTCGACCAGATCG TERM 2024 1864940 - 1864930 - g 72 -8.2 -4.11394 | opp_overlap 1864923 AGCGCATCGGCAAAA GCGG CAG CCGC TACGCCTTCGTCGAA TERM 2025 1865311 - 1865349 + G 72 -11.6 -3.53012 | CGGAAACCCTGGCCG CCTTGCGCAATGTGCCCG GCG TGGGCGAGGTGCGCGAGG TTTAGGCGGGGAAGG dnaE 1861842 - 1865354 + | DNA polymerase III subunit alpha TERM 2026 1867090 - 1867057 - g 79 -11.6 -3.84451 | opp_overlap 1867058 CCCGGGAAACCGAAA CCACCGCCGGCGCC TTGCGC GACACCGCCGGCGG GCTTGGTCAGGCGGC Rru_A1583 1865409 - 1867160 + | chemotaxis sensory transducer TERM 2027 1868270 - 1868246 - g 70 -6.3 -4.28994 | overlap 1868247 GACGATGGACGAAAA CGCCAGGACGA TGT TCAGCCTGGCC AATGTCACCCGGGAG Rru_A1584 1867326 - 1868996 + | chemotaxis sensory transducer TERM 2028 1869453 - 1869473 + G 74 -7.5 -4.2074 | CGATCGACGCCCTGG CCGGATTGC GCG GCGATCGGG TTTATCTGTTCACCG TERM 2029 1870019 - 1870039 + G 72 -8.2 -4.05788 | TATCCCCAGGCCCGG GCCATCGG CGCCA CCGAGGGC TTTCCTTTGACGGCG Rru_A1585 1869086 - 1870174 + | putative depolymerase TERM 2030 1870375 - 1870350 - f 71 -6.9 -4.19238 | gap 1, overlap 1870355 GGTTCAACCGGAAAA GGAAAGACGCCA CCA TGGC-TCTCCCC ACATTCTCCATGCGC rpsB 1870364 - 1871152 + | 30S ribosomal protein S2 TERM 2031 1871194 - 1871219 + F 100 -19.1 -4.87291 | opp_overlap 1871194 1871196 GCCCCCCCGAGACCA GATGGCGGCGT GCAG ACGCCGCCATC TTTTTGGTTCGGCTC TERM 2032 1871219 - 1871194 - f 88 -19.1 -2.62184 | opp_overlap 1871194, overlap 1871196 GCCCCCCCGAGACCA GATGGCGGCGT GCAG ACGCCGCCATC TTTTTGGTTCGGCTC TERM 2033 1871217 - 1871196 - f 81 -15.9 -2.85351 | opp_overlap 1871194, overlap 1871194 CCCCCCGAGACCAGA TGGCGGCGT GCAG ACGCCGCCA TCTTTTTGGTTCGGC tsf 1871368 - 1872297 + | elongation factor Ts TERM 2034 1872331 - 1872373 + F 83 -15.6 -3.07344 | gap 1, overlap 1872334 1872337 GCGTCAAACGCCTGT TGGCCGCCGGGTTCGGGTC TCTTAT GATCCGG-CCCGGCGGTCG TCTGTTCCCGCCTGG TERM 2035 1872334 - 1872370 + F 79 -15.9 -2.7535 | gap 1, overlap 1872331 1872337 TCAAACGCCTGTTGG CCGCCGGGTTCGGGTC TCTTAT GATCCGG-CCCGGCGG TCGTCTGTTCCCGCC TERM 2036 1872801 - 1872783 - g 77 -6.7 -4.57341 | gap 1 AACGCCCTGGAAAAA CGCGGCGT GCAA AC-CCGCG TCCAGTCGGCGATCC Rru_A1588 1872480 - 1873232 + | uridylate kinase Rru_A1589 1873238 - 1873813 + | ribosome recycling factor TERM 2037 1873988 - 1874005 + G 72 -5.5 -4.40173 | overlap 1873957 CCGCTCCCGAACTGG GCATCAG CCAT CTGACGC TTTTCGGTTTCTCCT Rru_A1590 1873813 - 1874547 + | undecaprenyl pyrophosphate synthetase Rru_A1591 1874596 - 1875402 + | phosphatidate cytidylyltransferase Rru_A1592 1875399 - 1876601 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 2038 1876598 - 1876621 + F 76 -6.6 -4.57063 | CCACGCCGCGGCCGC CTGACCGGGG ATTG CGTCGGTCGG TTTCTTATCTTTTCC Rru_A1593 1876785 - 1877888 + | peptidase RseP TERM 2039 1878085 - 1878032 - g 80 -17.3 -2.71144 | gap 1, overlap 1878037 1878068 1878069 CAGCCCTTTCAAGCA CCCAACCCGCCGCCGCCCAATCGGCC GGC GGCCAAA-GGGCAGCGGCGCAACGGG GCGGCGCCTTCACCG TERM 2040 1878080 - 1878037 - g 76 -15.2 -3.13164 | gap 1, overlap 1878032 1878068 1878069 CTTTCAAGCACCCAA CCCGCCGCCGCCCAATCGGCC GGC GGCCAAA-GGGCAGCGGCGCA ACGGGGCGGCGCCTT TERM 2041 1879630 - 1879599 - g 72 -4.4 -4.52781 | gap 1, overlap 1879593 1879600 TAACTACAACGAAAA TCTCGGCCATAC-CT TCA AGTACACGGCCGAGT TCAACGAGATCACCG Rru_A1594 1877971 - 1880328 + | surface antigen D15 Rru_A1595 1880333 - 1880929 + | Outer membrane chaperone Skp (OmpH) Rru_A1596 1881099 - 1881593 + | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase Rru_A1597 1881624 - 1882421 + | UDP-N-acetylglucosamine acyltransferase Rru_A1598 1882433 - 1883293 + | hypothetical protein TERM 2042 1883652 - 1883637 - g 76 -6 -4.56597 | opp_overlap 1883649 1883649, overlap 1883638 TGCTGGCCTGAAAAA GGCCGG CAAC CCGGCG GTGCGCCTCCATTAT TERM 2043 1883823 - 1883847 + G 70 -10.6 -3.53091 | opp_overlap 1883819 1883820 GGTGATCGAAACCCC GGCCGGGGCG GGCAA TGGCCCGGCC TTTCGCCAAGCCCAT TERM 2044 1883900 - 1883938 + G 86 -18 -3.01924 | opp_overlap 1883867 TGCTTGTCGTTCTGC CGGGCAGCCGGCGCGGCG AGG TGCGGCGCCTGCTGCCGG TCTTCGCCGCCGCTG Rru_A1599 1883290 - 1884513 + | Lipid-A-disaccharide synthase TERM 2045 1884571 - 1884531 - T 100 -24.4 -2.65815 | opp_overlap 1884531, overlap 1884503 1884556 TTTAGATTTAGATCA GGATTCAGATTTCAGGTC GATCA GACCTGAAATCTGAATCC TGATCTAAGGCGGTG TERM 2046 1884531 - 1884571 + T 100 -24.4 -2.62396 | opp_overlap 1884503 1884531 1884556 TTTAGATTTAGATCA GGATTCAGATTTCAGGTC GATCA GACCTGAAATCTGAATCC TGATCTAAGGCGGTG TERM 2047 1884614 - 1884638 + T 100 -15 -5.52384 | opp_overlap 1884614 GCGGGACGATAAAAA GGCGGTCTCC TTTGT GGAGGCCGCC TTTTTTTGATCGGGA TERM 2048 1884638 - 1884614 - T 100 -12.8 -4.91109 | opp_overlap 1884614 GCGGGACGATAAAAA GGCGGTCTCC TTTGT GGAGGCCGCC TTTTTTTGATCGGGA Rru_A1600 1885971 - 1884670 - | citrate synthase gltX 1887505 - 1886099 - | glutamyl-tRNA synthetase TERM 2049 1887848 - 1887858 + G 83 -8.2 -4.57482 | CGTCGCCCTGGGGCT GGGC ATC GCCC TTTATTTCTCCCTGA TERM 2050 1888214 - 1888165 - g 75 -9.1 -4.08767 | gap 1, opp_overlap 1888205, overlap 1888166 TGGAGGCGGCGAAAA CCCCGCGCCGGATCCGCCTGCG CCTCCAT CCCGGGCAGA-CCGGCGGGGTG GCGCCGCTCCCGGGC Rru_A1602 1887684 - 1889903 + | ComEC/Rec2-related protein Rru_A1603 1890621 - 1889914 - | PhoH-like protein TERM 2051 1890723 - 1890704 - H 100 -11.4 -5.1861 | GCGACCATGAAAAAA CGCCTCCC TCAG GGGAAGCG TTGGCGGAGCGGGCG TERM 2052 1891341 - 1891351 + G 70 -2.4 -4.59773 | CGAGGGCGTGGTGGT CAGC GCG GCGG TTTTTCGCGATGGCC Rru_A1604 1891159 - 1893225 + | Alpha amylase, catalytic region TERM 2053 1894286 - 1894298 + G 77 -10.5 -3.95584 | ACGTCGGCATCCGTC GGCGC CTG GCGCC TTTGCTTGATAACGA Rru_A1605 1893256 - 1896558 + | Alpha amylase, catalytic region TERM 2054 1897468 - 1897493 + G 72 -11.9 -3.54424 | GGTCATGCATGACGC CGGCATCGAGG TTAT CCTTGATGTCG TTTACAACCATACGG Rru_A1606 1896674 - 1898863 + | glycogen debranching protein GlgX Rru_A1607 1898895 - 1901081 + | 4-alpha-glucanotransferase TERM 2055 1901106 - 1901120 + G 73 -12.8 -3.44149 | overlap 1901104 1901104 TGCGGTGCGTATGGG CGGCGG TAG CCGCCG TGTTCTGTCTTGTCG TERM 2056 1902413 - 1902453 + G 89 -19.1 -2.83905 | overlap 1902404 CTGCTGCTGGTGCGT CTGGCCGTCATGCTGGTCA CCG TGGTCGGCATGATGGCCGG TCTGGTCGGTTATGG TERM 2057 1903674 - 1903651 - g 78 -5.9 -4.62069 | gap 1, opp_overlap 1903656, overlap 1903652 1903653 GGTCGAGGTGAAAAA GCCCG-CGGC TGGCG GCCGACCGGC CACGACCGGCGACAG Rru_A1608 1901090 - 1903696 + | MscS mechanosensitive ion channel Rru_A1609 1903783 - 1904085 + | hypothetical protein TERM 2058 1904666 - 1904709 + G 72 -15.2 -2.78596 | gap 1, opp_overlap 1904669 GGCCGAACCCTCGGA CAACGTGCGG-CGCTTCGCCT GCG AGGCGACGCGGCCGCGCGGCG TGTGGTGCGCCCATA TERM 2059 1904706 - 1904669 - g 89 -17.7 -3.30159 | gap 1, opp_overlap 1904666 CGAACCCTCGGACAA CGTGCGG-CGCTTCGCCT GCG AGGCGACGCGGCCGCGCG GCGTGTGGTGCGCCC TERM 2060 1904756 - 1904742 - g 85 -5.6 -5.00616 | GCCGCCTTGAAAAAA GCCCCG GAG CAAGGC TTGCCGATTCTGGAG Rru_A1610 1904172 - 1904954 + | hypothetical protein TERM 2061 1904936 - 1904986 + T 76 -14.2 -3.09933 | opp_overlap 1904947, overlap 1904940 1904947 CCGCGCCTCGCGCTC CCTAGATCAAACTGCGTGAAATGG CCC CCATTCAACGCAGTTTGATCTAAA TTCAATAGATTAGAG TERM 2062 1904940 - 1904982 + T 88 -19.4 -2.55392 | opp_overlap 1904947, overlap 1904936 1904947 GCCTCGCGCTCCCTA GATCAAACTGCGTGAAATGG CCC CCATTCAACGCAGTTTGATC TAAATTCAATAGATT TERM 2063 1904947 - 1904975 + T 78 -10.3 -3.86283 | opp_overlap 1904947, overlap 1904940 1904936 GCTCCCTAGATCAAA CTGCGTGAAATGG CCC CCATTCAACGCAG TTTGATCTAAATTCA TERM 2064 1904975 - 1904947 - T 85 -12.5 -3.83026 | opp_overlap 1904940 1904936 1904947 GCTCCCTAGATCAAA CTGCGTGAAATGG CCC CCATTCAACGCAG TTTGATCTAAATTCA Rru_A1611 1906144 - 1905044 - | cobalamin synthesis protein/P47K Rru_A1612 1906572 - 1906141 - | phosphoribosyl-AMP cyclohydrolase TERM 2065 1906524 - 1906544 + g 100 -19.7 -3.53012 | opp_overlap 1906508 1906504, overlap 1906522 CGGCGGTGAACCTCA CCGCCGCCC ATA GGGCGGCGG TTTCGGCGAGGGCGG Rru_A1613 1907747 - 1906569 - | cystathionine beta-lyase TERM 2066 1907203 - 1907192 - G 70 -2.2 -4.63486 | gap 1, overlap 1907193 AGGGCTCGAAGAAAA GCGGC GAG GCC-C AGGTGTTATCGAGCA TERM 2067 1908013 - 1907997 - H 74 -3.5 -4.84274 | overlap 1907998 CAACGAGAGCAAAAA GCGTCCG GAG CGGCGGC CAGGGGAAAGATTTT Rru_A1614 1908169 - 1908468 + | hypothetical protein TERM 2068 1908481 - 1908470 - T 71 -7.2 -4.15788 | overlap 1908471 AAGCCGCCCAATAAA CCGC CGTC GCGG CGCTGGGCGGGCCGT Rru_A1615 1909353 - 1908496 - | 3-mercaptopyruvate sulfurtransferase Rru_A1616 1910398 - 1909415 - | cysteine synthase A TERM 2069 1910077 - 1910090 + g 100 -4.5 -5.54894 | gap 1, overlap 1910067 1910071 1910077 GATCGGCCCCGCACA GG-CGC AGG GCGTCC TTTTTTTCCTGGCTT TERM 2070 1910475 - 1910422 - H 79 -8.1 -4.56367 | gap 1 GATCCCAGAAAGAAA GGGGTGAACGAAG-GACGCTCTTTCA AAT TGAAAGGGTGTCACGTCGCTCTCGCC GATCAAGGGAAAACA TERM 2071 1910668 - 1910695 + H 74 -5.5 -4.47611 | opp_overlap 1910672, overlap 1910669 1910672 GGGCGAGCCCCGGAC TGAAGGGGCGC CAAGGC GCGCCTTTCCA TGTTTTTTTATCCTG TERM 2072 1911290 - 1911320 + G 73 -9.6 -3.92075 | GCCGAGGAACCCTGT TCGACCTCGGGCTG GGC CTGCCCCATGTCGA TTTCTGCGTGCGCGT Rru_A1617 1910734 - 1911645 + | hypothetical protein Rru_A1618 1911965 - 1911711 - | hypothetical protein Rru_A1619 1912054 - 1912578 + | hypothetical protein TERM 2073 1913151 - 1913141 - g 79 -8.2 -4.32034 | opp_overlap 1913141 TTACCATGACGAAAA CGCC AAT GGCG TCTTCGATCGCGGCC TERM 2074 1913181 - 1913233 + G 95 -11.1 -4.56597 | overlap 1913182 CTGCTGGGTGTTCCC TTGGAGGGCTTCGGGTTTTCGCGCG ATG CCCGGGTGACCCTGAAGCCCCCCAG TTTTTCCGACGCCGC TERM 2075 1913182 - 1913232 + G 71 -12.4 -3.33744 | overlap 1913181 TGCTGGGTGTTCCCT TGGAGGGCTTCGGGTTTTCGCGCG ATG CCCGGGTGACCCTGAAGCCCCCCA GTTTTTCCGACGCCG Rru_A1620 1912788 - 1913303 + | hypothetical protein Rru_A1621 1914377 - 1913328 - | tRNA-dihydrouridine synthase A TERM 2076 1914419 - 1914404 - H 84 -6 -5.00616 | overlap 1914405 GTCCTTGCGAAAAAA CCGGCC CGAC GGCCGT GTGGGGGAGGAGTCC TERM 2077 1914917 - 1914931 + H 81 -5.6 -4.74103 | opp_overlap 1914917 CCTCTTGGATCAAAA CGATCC ACC GGAGCG TTTTTCCGTTGGCCC TERM 2078 1915547 - 1915561 + G 72 -7 -4.29738 | overlap 1915548 CCGGCAACGCCCGCG CCCGGG TCG CCCGGC TTTTGCTCCATCTCC Rru_A1622 1914994 - 1915773 + | Crp/FNR family transcriptional regulator TERM 2079 1916001 - 1916015 + T 79 -8.5 -4.57073 | AATCGTCGGTCCCAG GGCCG GGGTG CGGCC TTTTTGGCAAGGATA TERM 2080 1916135 - 1916145 + T 71 -6.8 -4.24342 | CATGTGTCGAGCGCC CCAC AGT GTGG TTTCTTCGTCACAAG TERM 2081 1916247 - 1916265 + T 84 -8.8 -4.56775 | opp_overlap 1916246 CGCTCCCCATATCAG GGCCCC CTATGTC GGGGCC TTTTTCACAGGCGCT Rru_A1623 1916794 - 1916270 - | amino acid-binding ACT TERM 2082 1916968 - 1916958 - H 81 -8.2 -4.59773 | CGGGAGCGGGAAAAA CGGC TCG GCCG ACACCGGGGACGGCG Rru_A1624 1917139 - 1917582 + | hypothetical protein TERM 2083 1917871 - 1917860 - g 77 -3.6 -4.8048 | CCGCCACAGGAAAAA CCGG CAAT CCAG ACTCTTTTTATCATA Rru_A1625 1917778 - 1918545 + | hypothetical protein Rru_A1626 1918564 - 1919172 + | methyltransferase Rru_A1627 1919618 - 1919283 - | hypothetical protein Rru_A1628 1919848 - 1919618 - | hypothetical protein Rru_A1629 1921839 - 1919938 - | hypothetical protein TERM 2084 1920502 - 1920486 - G 72 -11.5 -3.53091 | opp_overlap 1920491 AGGCCCCGGTCGAAA CCCGGCC GCC GGCCAGG GTCAGGCTGGCGGTT TERM 2085 1920491 - 1920515 + g 81 -14.9 -3.53012 | opp_overlap 1920486 CCGGTCGAAACCCGG CCGCCGGCCAG GGT CAGGCTGGCGG TTTCCACCCGCAAGG TERM 2086 1921529 - 1921479 - G 72 -14.4 -3.05384 | CGCCGCTCCAGCCAA GGTCCTCGGCCCGCGCCGATCCGC GCA GCGGCCCAACCCCGGCCGTGGGCC AGCCAAGGCTGGTCA Rru_A1630 1921939 - 1922547 + | hypothetical protein Rru_A1631 1922659 - 1923081 + | hypothetical protein Rru_A1632 1924791 - 1923094 - | putative monovalent cation/H+ antiporter subunit D TERM 2087 1923403 - 1923391 - G 84 -6.9 -4.78107 | CAGCAGCACGAAAAA CGCCA GAC CGGCG AACAGCAGCAATTGG Rru_A1633 1925020 - 1924781 - | hypothetical protein Rru_A1634 1926489 - 1925017 - | NADH dehydrogenase (quinone) Rru_A1635 1927994 - 1926486 - | putative monovalent cation/H+ antiporter subunit D TERM 2088 1927194 - 1927183 - G 70 -3.6 -4.56775 | overlap 1927184 1927185 AGGTTGGCCGAAAAA GCCG GGGC CAGC ACGCCCAGAAACAGC TERM 2089 1927248 - 1927227 - G 77 -5.8 -4.58424 | GACCATGACATAAAA GGCGACCT TGGTCG ACGTCGCC GCCAGAAAGGCGCCA Rru_A1636 1928356 - 1927991 - | NADH-ubiquinone oxidoreductase, chain 4L TERM 2090 1928337 - 1928320 - G 90 -4.1 -5.4593 | TCAAAACAATAAAAA GCCAATA GTTA TAGTGGC TTGCGATCTCATTCC Rru_A1637 1928772 - 1928356 - | putative monovalent cation/H+ antiporter subunit B TERM 2091 1928417 - 1928388 - G 70 -3.5 -4.5287 | overlap 1928389 CGAAACTAAGGAAAA GGGCGACCATC ACCGAACA GACGGTCATCC CCACGCCCAGTTCGA Rru_A1638 1929371 - 1928772 - | putative monovalent cation/H+ antiporter subunit B Rru_A1639 1929718 - 1929368 - | Na+/H+ antiporter subunit Rru_A1640 1930008 - 1929715 - | multiple resistance and pH regulation protein F Rru_A1641 1930493 - 1930008 - | cation antiporter Rru_A1642 1931647 - 1930640 - | putative sulfonate/nitrate transport system substrate-binding protein TERM 2092 1930726 - 1930712 - G 72 -7 -4.20516 | overlap 1930713 GCGGGACTGAAGAAA GCCGGC GAA GCGGGC ATAGCGCCGCTCGTC Rru_A1643 1932532 - 1931747 - | binding-protein dependent transport system inner membrane protein Rru_A1644 1933314 - 1932529 - | ABC transporter component TERM 2093 1932615 - 1932642 + g 86 -17.7 -3.05384 | TGACATCGCCGGCGG TCGGCGGGCGC GGCGGG GCGCCCGCCGG TTCGATCACCGCGCC Rru_A1645 1933506 - 1934138 + | hypothetical protein Rru_A1646 1934364 - 1934663 + | ETC complex I subunit region Rru_A1647 1939624 - 1935149 - | hypothetical protein TERM 2094 1938359 - 1938384 + g 76 -6 -4.5442 | overlap 1938355 1938366 GAGCAGCCCAGTCAG GCGCTCGGGC CAGATT GCCTGGCCGC TTTTCTCGTTGAGCG TERM 2095 1938600 - 1938556 - G 70 -11.3 -3.56325 | gap 1, overlap 1938557 CGCCGAGAACCATAA GCGCCGGACGCCCGGCCGCG AGCTGG CGCGCGCAGGCGTC-GGCGA GAAGGTGTGACTTGC TERM 2096 1938599 - 1938557 - G 72 -14.8 -2.73474 | gap 1, overlap 1938556 GCCGAGAACCATAAG CGCCGGACGCCCGGCCGCG AGCTGG CGCGCGCAGGCGTC-GGCG AGAAGGTGTGACTTG Rru_A1648 1940050 - 1940394 + | helix-turn-helix protein, CopG Rru_A1649 1940486 - 1940680 + | hypothetical protein Rru_A1650 1941794 - 1940652 - | hypothetical protein Rru_A1651 1943011 - 1941845 - | hypothetical protein TERM 2097 1942978 - 1942992 + g 75 -11.4 -3.72695 | CCAACACCAGGGCCG CGGCGA TTG TCGCCG TTTGGTCAGCCCGCT Rru_A1652 1943897 - 1942998 - | LysR family transcriptional regulator TERM 2098 1944079 - 1944097 + H 71 -5.8 -4.43189 | overlap 1944080 AGGCTCCGTTTCCCC CGCCGCCC CGG GGGCCGCC TTTTGTCCCATTCAT TERM 2099 1944738 - 1944775 + G 71 -9.1 -3.78775 | gap 1, opp_overlap 1944734, overlap 1944739 ACGCCATCGAACGCC AGC-GCTTTCGCCGCCAG TTG CTGATGGCGGAAGCGGCC TTTCGTCATACGGAC Rru_A1653 1944353 - 1945654 + | guanylate cyclase TERM 2100 1945855 - 1945872 + G 71 -2.7 -4.58395 | gap 1, overlap 1945855 CATGTGGTTCAAGAC GGT-ATCG AGG CGATGGCC TTTTTGCGCCGTGAA Rru_A1654 1945753 - 1946172 + | response regulator receiver domain-containing protein Rru_A1655 1946641 - 1946195 - | hemerythrin HHE cation binding region TERM 2101 1946655 - 1946670 + H 89 -10.4 -4.56775 | overlap 1946644 ATGCGGGTTCACCTT GGAGGG ATAC CCCTCC TTTTTGAGGCCGGAT TERM 2102 1946886 - 1946909 + H 100 -12.4 -5.41746 | overlap 1946887 TTTCCTCCCTGAACT TGGGCCGTAG GTAA CTACGGCCCC TTTTTTTCGGCGGTT TERM 2103 1946887 - 1946908 + H 95 -15.9 -3.83963 | overlap 1946886 TTCCTCCCTGAACTT GGGCCGTAG GTAA CTACGGCCC CTTTTTTTCGGCGGT TERM 2104 1946916 - 1946959 + H 73 -4.5 -4.58685 | gap 3, overlap 1946917 TACGGCCCCTTTTTT TCGGCG-GTTTCGCCGCGGGCT AAA AGCCCGC--CGATTCGCGCCGC TTTTTCCACCGGTTT Rru_A1656 1947172 - 1947540 + | hypothetical protein Rru_A1657 1948775 - 1947588 - | major facilitator transporter TERM 2105 1948040 - 1948068 + g 71 -12.3 -3.31144 | opp_overlap 1948040, overlap 1948041 CTTCGGCCCACAGCA GCCCGACCTGGGT TTC GCCCAGGCCGGCC TTGTGCCAATGCACG TERM 2106 1949171 - 1949121 - g 74 -12.3 -3.53563 | gap 1, opp_overlap 1949124, overlap 1949099 1949100 ATACCTGGGCCGAAA CGGCCCAGCGCGCCCGC-CGGCTG GCTT CGGCCCTGCGGGCGCGCGGCATCG GCCCCGAGGATACGG Rru_A1658 1948973 - 1950601 + | acyl-CoA synthetase TERM 2107 1950717 - 1950734 + F 70 -3.3 -4.63486 | opp_overlap 1950710 1950707, overlap 1950723 CGGAACGAGCGCGAC CGCTATG CCGC CCTGGCG TTTTGTTGGGCCGAT TERM 2108 1950773 - 1950783 + G 74 -5.4 -4.57073 | overlap 1950757 GCAGATCGACAGCCG CGAT CGC ATCG TTTTTGCCGCCGGTC TERM 2109 1950919 - 1950945 + G 77 -12.9 -3.59979 | opp_overlap 1950919 1950918 TGGTGCGGCGCAAAG GGCGGGCCTCC GGCGA GGTGGTCCGCC TTTACCGTCCCCGGG Rru_A1659 1950756 - 1952378 + | diguanylate phosphodiesterase Rru_A1660 1952389 - 1953435 + | peptidase M23B Rru_A1661 1954200 - 1953505 - | extensin-like Rru_A1662 1954707 - 1954240 - | SmpA/OmlA TERM 2110 1955315 - 1955289 - g 100 -12.2 -4.85545 | opp_overlap 1955289 AGGAAATCAAGAAAA TGGCCCGGGCCT TCT ATGGCCGGGCCA TGGCTTACGAAGCGG Rru_A1663 1954958 - 1955566 + | ubiquinol-cytochrome C chaperone Rru_A1664 1955568 - 1956149 + | hypothetical protein rpmF 1956259 - 1956444 + | 50S ribosomal protein L32 Rru_A1666 1956488 - 1957537 + | putative glycerol-3-phosphate acyltransferase PlsX Rru_A1667 1957629 - 1958603 + | 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 2111 1958634 - 1958616 - f 74 -3.1 -4.7657 | gap 1, opp_overlap 1958617, overlap 1958617 1958618 TAAAAAGGCCAAAAA CCCGA-CG GGGT CGATCGGA TTTAGTTTTTTCATC Rru_A1668 1958809 - 1959126 + | integration host factor, alpha subunit Rru_A1669 1959133 - 1959858 + | MerR family transcriptional regulator TERM 2112 1960139 - 1960157 + F 82 -13.1 -3.59262 | overlap 1960155 CCTAAACGGTTCCAA CGGCCCC CTCGT GGGGCCG TTTCCGCGTCTGGGG TERM 2113 1961003 - 1961024 + F 100 -15.9 -5.64304 | TCCGAATGGTTGACA GCCCTGCCT TCCG AGGCAGGGC TTTTTTATTATGTTG Rru_A1670 1961173 - 1961367 + | hypothetical protein Rru_A1671 1961364 - 1962509 + | hypothetical protein Rru_A1672 1962810 - 1962490 - | hypothetical protein TERM 2114 1963140 - 1963181 + G 88 -15.1 -3.89822 | TATCCCTATGAGCTA CCCTGCATCGTCGCCTTGC CGGT GCAAGCCGGCGATGGCGGG TTTCTCGACTGGATC Rru_A1673 1962855 - 1963220 + | CutA1 divalent ion tolerance protein TERM 2115 1963201 - 1963237 + T 100 -13.5 -4.85782 | opp_overlap 1963207, overlap 1963203 TCGACTGGATCACCG CGAACAGCCGGCCCGGG TGA CGCGGGCCGGCTGGAGG TTTGTTTTTAGAAGG TERM 2116 1963203 - 1963235 + T 77 -14.7 -2.69725 | opp_overlap 1963207, overlap 1963201 GACTGGATCACCGCG AACAGCCGGCCCGGG TGA CGCGGGCCGGCTGGA GGTTTGTTTTTAGAA TERM 2117 1963231 - 1963207 - T 89 -18.5 -3.04792 | opp_overlap 1963203 1963201 GGATCACCGCGAACA GCCGGCCCGGG TGA CGCGGGCCGGC TGGAGGTTTGTTTTT Rru_A1674 1964399 - 1963245 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Rru_A1675 1964444 - 1965322 + | cytochrome c assembly protein TERM 2118 1965472 - 1965450 - f 70 -10.6 -3.524 | opp_overlap 1965451, overlap 1965451 GAGCGATCCAGATAA GCCAAGTCCT TGA AGGACTTGGT TTTTTGCTTTTGTCC TERM 2119 1965471 - 1965451 - f 73 -14.1 -2.71119 | opp_overlap 1965451, overlap 1965450 AGCGATCCAGATAAG CCAAGTCCT TGA AGGACTTGG TTTTTTGCTTTTGTC TERM 2120 1965451 - 1965471 + F 100 -14.1 -5.50313 | opp_overlap 1965451 1965450 AGCGATCCAGATAAG CCAAGTCCT TGA AGGACTTGG TTTTTTGCTTTTGTC TERM 2121 1965891 - 1965919 + G 70 -11 -3.53563 | gap 1 GTGGTGGGCGGCTTG GGCGGGTCGGCGC TGAT GCGC-GATCTGCC TTTGGCCGCGCGTAT Rru_A1676 1965546 - 1966634 + | dihydrouridine synthase TIM-barrel protein nifR3 TERM 2122 1967447 - 1967419 - g 83 -15.2 -3.73534 | opp_overlap 1967409 CAATCTGATCAAGAA CGCCGCCGAGGC GATCG GCCCGGGCGGCG GCGAGATCGTGCTGT Rru_A1677 1966637 - 1967737 + | Signal transduction histidine kinase, nitrogen specific, NtrB TERM 2123 1968493 - 1968474 - g 73 -12.1 -3.40403 | GTTCGGCCACGAGAA GGGCGCC TTCACC GGCGCCC ATGCCCGCTCGGCCG Rru_A1678 1967836 - 1969281 + | nitrogen metabolism transcriptional regulator, NtrC, Fis family Rru_A1679 1969288 - 1971570 + | multi-sensor Signal transduction histidine kinase TERM 2124 1972194 - 1972227 + G 71 -12.4 -3.29649 | gap 1, opp_overlap 1972190, overlap 1972208 TGGAGATCGAACTGC TCGGCGCCG-AGCCG GGCAG TGGCGACGGCGCCGA TTCCTATCGTAAGAT TERM 2125 1972263 - 1972242 - g 74 -14.5 -3.05963 | opp_overlap 1972258, overlap 1972258 ATTCCTATCGTAAGA TCGGCCTGT TCGA ACAGGCCGA CGGCGGCACCTTGCT Rru_A1680 1971560 - 1972960 + | two component, sigma54 specific, Fis family transcriptional regulator trkA 1972992 - 1974368 + | potassium transporter peripheral membrane component Rru_A1682 1974564 - 1975439 + | D-amino acid aminotransferase TERM 2126 1975469 - 1975489 + G 85 -15.4 -3.67611 | opp_overlap 1975469 GTCTTTCCCTGGAAA CGGCGCGC CCCCC GCGCGCCG TTCTCTTCGACTGGG TERM 2127 1975489 - 1975469 - g 83 -15.4 -3.53012 | opp_overlap 1975469 GTCTTTCCCTGGAAA CGGCGCGC CCCCC GCGCGCCG TTCTCTTCGACTGGG Rru_A1683 1975429 - 1976124 + | HAD family hydrolase hfq 1976387 - 1976638 + | RNA-binding protein Hfq TERM 2128 1976667 - 1976708 + F 77 -8.1 -4.36914 | gap 3, opp_overlap 1976671 1976672, overlap 1976672 1976674 CGCTGATCACGATCA GGA--AGGC-CCGCCGTCCG CATCC CGGGCGGCGGTGCTTCATCC TTTTCTCCGCAAGGG TERM 2129 1976672 - 1976701 + F 86 -15 -3.3972 | gap 1, opp_overlap 1976671 1976672, overlap 1976667 1976674 ATCACGATCAGGAAG GC-CCGCCGTCCG CATCC CGGGCGGCGGTGC TTCATCCTTTTCTCC TERM 2130 1976674 - 1976698 + F 81 -16.4 -2.84344 | opp_overlap 1976671 1976672, overlap 1976672 1976667 CACGATCAGGAAGGC CCGCCGTCCG CATCC CGGGCGGCGG TGCTTCATCCTTTTC Rru_A1685 1976698 - 1977954 + | small GTP-binding protein domain-containing protein TERM 2131 1978007 - 1977968 - f 100 -22.8 -5.48825 | opp_overlap 1977968 GACCACCGAAAAAAA GCCCCCTCCGCGCCCCGC CAAA ACCGGGCGGGGAGGGGGC TTTTTCGTGCGAAAA TERM 2132 1977968 - 1978007 + F 100 -22.1 -4.72272 | opp_overlap 1977968 GACCACCGAAAAAAA GCCCCCTCCGCGCCCCG CCAAAA CCGGGCGGGGAGGGGGC TTTTTCGTGCGAAAA TERM 2133 1978542 - 1978575 + F 88 -18.9 -2.78384 | gap 1, opp_overlap 1978534 TGTCAAAGTCTTGGG GCGGGGGGCGGCGAGC GGA GTTCGC-GCTCCCCGC TCTAGTAGACGGGAA Rru_A1686 1978617 - 1978886 + | hypothetical protein TERM 2134 1978879 - 1978895 + F 80 -3.5 -5.06414 | ACCGCGATATCTATG CCCCCTG ACC CTGGCGG TTTTTCTTGCGCGGC Rru_A1687 1978937 - 1979755 + | inositol monophosphatase TERM 2135 1980205 - 1980257 + G 72 -5.4 -4.36914 | gap 2, opp_overlap 1980223, overlap 1980245 CACTTCGGCGGTTTT GCGCGATCTGGTCGAAGAGGCGGCCT CCC GGGACGGC-CTTCG-CCAGCGGGCGC TTTTATCGCGGGAGG Rru_A1688 1979831 - 1980457 + | hypothetical protein Rru_A1689 1981200 - 1980664 - | hypothetical protein Rru_A1690 1982207 - 1981368 - | hypothetical protein TERM 2136 1982004 - 1981985 - G 85 -10 -4.18197 | AGCGGGCATGGAAAA CGACCTGC AGCA GCAGATCG CCCAATTCGTCGCGC Rru_A1691 1983107 - 1982256 - | spermidine synthase TERM 2137 1983270 - 1983296 + H 72 -3 -4.80453 | gap 2 TATTTTCCCGTCCAC CGCACCAGTCCC GGCAA GGGG--GGTGCG TTTGTTTTATGGTAA Rru_A1692 1983381 - 1983893 + | S-adenosylmethionine decarboxylase related TERM 2138 1983934 - 1983895 - f 74 -10.9 -3.53012 | gap 1, opp_overlap 1983902 1983906 GCGGCGTGGTCTAAA GGACTGAGGAAG-AAGCG TCTTT CGCTTTCTTCCTTAATCC CTTGGCCTATCCGTC TERM 2139 1984667 - 1984651 - g 73 -13.7 -3.14564 | opp_overlap 1984655 1984657 CGATCTGCTGATCAA GGCCCAG GCC CTGGGCC TTGAAGCCCACGGCG TERM 2140 1984747 - 1984712 - g 77 -3.8 -4.72272 | GGCTCGCAGCAAAAA GACCTTGGCCAGTGGG ATGT CGCCCTGGAAAAGGCC GCCGAGCTGTTCCGC Rru_A1693 1984037 - 1985302 + | ornithine decarboxylase TERM 2141 1985323 - 1985354 + F 100 -18.7 -5.06414 | CCTTTGGTGATTGAC CGGCCCGGACCGC CTTGGC GCAGTCCGGGCCG TTTTTGTTGCGCCGG TERM 2142 1985526 - 1985560 + G 71 -14.3 -2.87564 | gap 1, overlap 1985545 1985557 CGAACCGGCCGAGGA G-GAGGGGGGCAGGGC GCTG GCCCTGCTCACCTCGC TGTATCGCCCGGTGA Rru_A1694 1985410 - 1986276 + | hypothetical protein TERM 2143 1986262 - 1986288 + T 100 -14.5 -4.57353 | gap 1 TTGCTGGGATCCCCA GACCGCGAGCGG TGAA CCG-TCGCGGTC TTTTCTCTCCTAGGA Rru_A1695 1987034 - 1986594 - | hypothetical protein Rru_A1696 1987596 - 1987054 - | permease Rru_A1697 1988042 - 1987683 - | hypothetical protein TERM 2144 1987764 - 1987721 - G 87 -18.8 -2.52464 | gap 1 GCGGCGGCCAAGTCA GGCGGTGCGGGCTTCGAACCG CGG CGGGGCGAAGCC-GCGCCGCC GCTTGCCCGATCGCC TERM 2145 1987898 - 1987853 - G 70 -10.1 -3.65046 | GCCCCACGGGAAGAA CCGGGGCGGCCGGGGCCGATG AGGG CGCAGGCCCCTGCCCCGCCAG CCCCTTCCCGGCCAG Rru_A1698 1988154 - 1989167 + | cation efflux protein Rru_A1699 1989988 - 1989185 - | Beta-lactamase-like Rru_A1700 1990801 - 1989989 - | TatD-related deoxyribonuclease Rru_A1701 1992428 - 1990869 - | methionyl-tRNA synthetase TERM 2146 1991244 - 1991273 + g 70 -13.5 -3.05384 | overlap 1991246 CTTGTCGAGCAGGGC GACGGCGGCGGCC AACA GGGCGTCGTCGTC TTCGCTGAAGGGCCC TERM 2147 1991490 - 1991451 - G 70 -11.4 -3.48292 | gap 1, overlap 1991449 1991465 ACGCAGCAGGAAATA GCGGAC-CGGATCAAGGCC ATA GGTCTCGATCAGCGCCCGC GGATCGATGACGTTG TERM 2148 1991585 - 1991561 - G 85 -13.5 -4.09864 | overlap 1991562 AGCCATGGGCGAAAA CCCGGCCCGGA ACC TCCAGGCCGGC GGCCATCAGGAAGGC TERM 2149 1991584 - 1991562 - G 82 -17 -3.05597 | overlap 1991561 GCCATGGGCGAAAAC CCGGCCCGGA ACC TCCAGGCCGG CGGCCATCAGGAAGG TERM 2150 1991954 - 1992001 + g 71 -14.9 -2.60512 | gap 2, overlap 1991950 1991980 GCTCCTCCACCCACT CCACCGGCGCGCCGGTGGGGGCT AGGC GGCTGCCATCGGCG-GCCG-TGG TCAGTTCGTCTTCGC TERM 2151 1992424 - 1992408 - G 70 -3.5 -4.52589 | overlap 1992410 CGTCGTTAGATAAAA CGGGGGC TTG GGCCCGG CCATGATCGGAAACT Rru_A1702 1993649 - 1992525 - | DNA polymerase III subunit delta' TERM 2152 1993469 - 1993422 - G 77 -9.9 -3.93256 | gap 3 CAGAGCGCCAAACAA TCCGCCCTCCCCGCCCTCTAGGCC GCC GGCC-A--GGGCGAAGCGGGCGAA ACGAAAGGCCAGGGT TERM 2153 1993488 - 1993476 - G 75 -9.1 -4.05788 | overlap 1993472 GCGGGCGAAACGAAA GGCCA GGG TGGCC TTGCCGATGCCGCGC Rru_A1703 1994293 - 1993649 - | thymidylate kinase TERM 2154 1993985 - 1993928 - G 79 -8.9 -4.41348 | gap 1, opp_overlap 1993968 GCCGCCGCAAACAAA GGCGT-GCAGGGCGTCGAGCTCGTCCTG GGG CAGGCCATGGCCGCCGCCCTGATAGGCC GAGGTTGAATCGGCG TERM 2155 1994284 - 1994298 + g 74 -12.8 -3.61764 | AGGTGATGAACCGTC CGCCGG TCA CCGGCG TTTCCCGCTTCATCG Rru_A1704 1995482 - 1994316 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 2156 1994788 - 1994809 + g 72 -8.7 -4.08767 | overlap 1994780 GCGGTCAGGCCGAAG CCGGCGATA TTGG TATGGCCGG TTTTCAGGCCATCGG TERM 2157 1995662 - 1995639 - R 100 -9.6 -4.95806 | AAATGAGGACAAAAA TGTCGGATTG GAGG CAATCCGTCA GTCCTCGATGAGTCG Rru_A1705 1996763 - 1995660 - | rare lipoprotein A TERM 2158 1995754 - 1995724 - G 70 -11 -3.55622 | CGCAAGGTGTTGAAA GCCTGGGTGCCGTC GGC GAAGGGCCCCAGGC GCACCCGGTACAAAA TERM 2159 1995918 - 1995879 - G 82 -17 -2.89742 | gap 1, opp_overlap 1995879 GCCAACCTGGACATA GGCGTC-GCCGCCGGCGGG GCC CCGGACGGCGGCTGGCGCC TTCGTGGCCGGCCCC TERM 2160 1995879 - 1995918 + g 100 -19.2 -3.14132 | gap 1, opp_overlap 1995879 GCCAACCTGGACATA GGCGTC-GCCGCCGGCGGG GCC CCGGACGGCGGCTGGCGCC TTCGTGGCCGGCCCC Rru_A1706 1998124 - 1996760 - | lytic murein transglycosylase TERM 2161 1998931 - 1998903 - R 80 -14.5 -3.10255 | opp_overlap 1998878 1998900, overlap 1998878 1998925 AGAAGATCTATGGAA CCGGTCGCTTGGC TCC GCAAAGCGGCCGG AGCGACTGGAACTCG Rru_A1707 1999929 - 1999261 - | hypothetical protein TERM 2162 2001146 - 2001188 + r 88 -19.3 -2.85351 | opp_overlap 2001126 2001144 2001145 2001176 2001178 TTCCCCGAGAGAATC TTCCTCCACTGTCGGTTCC TCAAT GGAACAGACGGTGGAGGGA TCTAATCTCCCGCCG Rru_A1708 2002648 - 2002553 - | hypothetical protein Rru_A1709 2003296 - 2002802 - | PilT protein-like Rru_A1710 2003555 - 2003283 - | prevent-host-death protein Rru_A1711 2003823 - 2004230 + | endoribonuclease L-PSP Rru_A1712 2005739 - 2004237 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 2163 2004891 - 2004906 + g 77 -6.8 -4.4874 | overlap 2004882 CTCGGCCGCCGCCGC CATGGC CTGC GCCGTG TTTTGCATTTTTCCC TERM 2164 2005314 - 2005334 + g 77 -3.8 -4.72986 | overlap 2005312 2005316 TTCGATGACGGCTTG GGAGCGGC TGATC GCCGCCAC TTTTTCCTGCAGCTC TERM 2165 2005540 - 2005578 + g 73 -3.7 -4.59773 | gap 1, opp_overlap 2005528, overlap 2005553 AAGGCGCGATACTCG GCGCTGTCGCGTTCGGCG GGTT CGACGAACA-GGCTGTGC TTTTTGCCCCTCACC Rru_A1713 2006678 - 2005872 - | NAD(P)H dehydrogenase (quinone) TERM 2166 2007064 - 2007035 - g 70 -11.3 -3.61715 | gap 1, opp_overlap 2007058, overlap 2007036 CAGGCGGGCGAAGAA GCCCG-CGCGGCGC GGG GCGCCCCGGCGGGA ACGATCCGCCTGTCC TERM 2167 2007063 - 2007036 - g 72 -14.8 -2.76815 | gap 1, opp_overlap 2007058, overlap 2007035 AGGCGGGCGAAGAAG CCCG-CGCGGCGC GGG GCGCCCCGGCGGG AACGATCCGCCTGTC Rru_A1714 2006777 - 2007697 + | LysR family transcriptional regulator Rru_A1715 2008143 - 2007706 - | twin-arginine translocation pathway signal TERM 2168 2007782 - 2007768 - G 72 -7.1 -4.25104 | TCGCCCCGACGAAAA TGGCG ACGGG CGCCA AACCCAGGCTCAGCC Rru_A1716 2008547 - 2008140 - | YeeE/YedE TERM 2169 2008345 - 2008295 - G 100 -22.7 -4.29432 | gap 1, overlap 2008284 CAAAGCCCACCAAAA GGCCGGCGATGACGATGACCGGCC AGGA GGC-GACGATCGTCACCGCCGGCC AAGCCCCGACGATCA Rru_A1717 2008912 - 2008544 - | ArsR family transcriptional regulator TERM 2170 2010584 - 2010560 - g 83 -9.3 -4.36914 | opp_overlap 2010580 TTTCGGTGCAGAAAA TGGCCGAAC TGGCCGT GCTCGGCCA GGCCTTGGCGCGGGG TERM 2171 2011461 - 2011492 + G 71 -13.8 -2.94144 | gap 1, opp_overlap 2011455 2011460 2011463, overlap 2011463 2011467 2011468 CGAATTCAACGACAT CATCGCCG-CCATCG GCG CGATGGACGCCGATG TCATTTCCATCGAGA Rru_A1718 2009449 - 2011794 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Rru_A1719 2011791 - 2012582 + | thioesterase superfamily protein TERM 2172 2012593 - 2012623 + F 74 -12.6 -3.1372 | gap 1, opp_overlap 2012588, overlap 2012591 CCTGATCGAAGCGCC G-CTCGGGGAGGC CTAGGC GCCTCCCCGGGAC TGTTCGTCAACCATC TERM 2173 2013094 - 2013082 - f 90 -4.9 -5.32944 | overlap 2013089 TGTAGAATCAAAAAA TGAAA GCT TTTCA AAAAAAATCATTCTG TERM 2174 2013707 - 2013722 + F 70 -4.7 -4.5448 | overlap 2013713 AAAAATGGAGATCCT GATGC GGAAGG GCATC TTCTTTTTCTACATA TERM 2175 2013713 - 2013725 + F 77 -4.1 -4.87665 | overlap 2013707 GGAGATCCTGATGCG GAAGG GCA TCTTC TTTTTCTACATAAAG Rru_A1720 2013986 - 2014300 + | carboxymuconolactone decarboxylase Rru_A1721 2014297 - 2014854 + | isochorismatase hydrolase TERM 2176 2015054 - 2015073 + G 95 -7.8 -5.18643 | overlap 2015031 ACCGGGCGGCTGCTT GCCGCC TGGGATAC GGCGGC TTTTCTTTTCCTTGG TERM 2177 2015397 - 2015363 - g 100 -20.8 -5.18371 | opp_overlap 2015354 2015363 TTCTATAAAACAAAA TCCGGCCTGGTCTTCC CGG GGGAGACCAGACCGGA TTACTGGGACTTCAT TERM 2178 2015363 - 2015397 + G 100 -20.8 -3.16921 | opp_overlap 2015363, overlap 2015354 TTCTATAAAACAAAA TCCGGCCTGGTCTTCC CGG GGGAGACCAGACCGGA TTACTGGGACTTCAT Rru_A1722 2014940 - 2015572 + | hypothetical protein Rru_A1723 2016985 - 2015591 - | hypothetical protein Rru_A1724 2017171 - 2017848 + | ThiJ/PfpI Rru_A1725 2018666 - 2017887 - | carbonate dehydratase TERM 2179 2018636 - 2018623 - G 72 -4.5 -4.46656 | overlap 2018624 2018627 CCGACAAGACCAAAA GCGAC CGCC ATCGC GGCGTGGGAAAAAGC TERM 2180 2018755 - 2018743 - R 74 -5.5 -4.44548 | CAGATCCAACCAAAA GGACA ATG CGTCC GCGCCTTTTGCTTTT Rru_A1726 2022317 - 2018784 - | transcription-repair coupling factor TERM 2181 2019453 - 2019469 + g 75 -9.3 -4.08216 | opp_overlap 2019451 GGTCTGCATTACATC CAGCCGC TTG GCGGCGG TTTTCGAGACCGTGC TERM 2182 2020284 - 2020266 - G 76 -14.6 -3.14132 | CTGGCGGGCGAGCAA GGTGGTGG GCA CCACCACC GCCACCTGCCGGCCG TERM 2183 2021310 - 2021349 + g 72 -7.1 -4.19704 | gap 2, opp_overlap 2021306, overlap 2021308 CTCCAGGAACATCCG GGGCGGCGGCAGGGCGTGA TAGA TCATGCC--GCCGCCGGGC TTTTCGCTGGCCTTG TERM 2184 2021359 - 2021380 + g 70 -10.1 -3.64703 | CCGGGCTTTTCGCTG GCCTTGGCG CCAT CGCCAACGC TTTCCATCAGCCGGC Rru_A1727 2022588 - 2022322 - | hypothetical protein TERM 2185 2022858 - 2022817 - g 89 -15.1 -4.07687 | gap 1, opp_overlap 2022812 2022809 2022828 AGGGCGCGGGCAAAA CCATGGCGCCGCTGATC-GC CCG GCTGATCGGCGGCGACAAGG TGGTCGATCTGTTGT TERM 2186 2023807 - 2023768 - g 70 -10.4 -3.727 | opp_overlap 2023767 GCCAGCACATCGAAA CCCTGGCGCCGCTCTGCG CCAG CGCCGGGGTGCGCCTGGG CTTGCTGACCGGGCG TERM 2187 2024115 - 2024102 - g 80 -9.5 -4.25104 | GCGGCTTGATGAAAA GCCGC CGGG GCGGC TTCCCGCCGATACCC Rru_A1728 2022753 - 2024864 + | ATP-dependent DNA helicase RecG Rru_A1729 2025637 - 2024861 - | hypothetical protein TERM 2188 2025551 - 2025590 + g 85 -6.3 -4.86773 | overlap 2025586 GAAATACGTGCGTAG GCGGGCGCCAAAGGTCA TGCGTC TGGCTTTCTCCGCCCGC TTTTTGCTGGTTTTG Rru_A1730 2025767 - 2026294 + | nuclease Rru_A1731 2026647 - 2026315 - | hypothetical protein Rru_A1732 2027199 - 2026738 - | hypothetical protein TERM 2189 2027089 - 2027100 + g 74 -5.8 -4.56775 | opp_overlap 2027088 GGCCAGCAGATAATC GACC AGAC GGTC TTTTTCAGCCAGGGT Rru_A1733 2028361 - 2027225 - | hypothetical protein Rru_A1734 2028663 - 2028394 - | hypothetical protein Rru_A1735 2029596 - 2028832 - | hypothetical protein TERM 2190 2030141 - 2030177 + G 75 -7.1 -4.36914 | overlap 2030142 ATAGCGGTGGTCTGC CCGAACTGGGCTTCGAC ACC GTCGGATCCCTGATCGC TTTTCTGGAAAAGCG Rru_A1736 2029960 - 2030223 + | hypothetical protein TERM 2191 2030464 - 2030454 - g 72 -6.8 -4.27117 | GCCGGAGAAGACAAA TGGG CCG CCCA GCTTGACAACCGCGT Rru_A1737 2030229 - 2030507 + | hypothetical protein Rru_A1738 2030933 - 2030547 - | hypothetical protein TERM 2192 2030891 - 2030877 - G 73 -4.2 -4.59511 | overlap 2030823 AAGATCGGGGAAAAA GGCG CTAAACC CGCC AAGGTCATCGGTTTC Rru_A1739 2031200 - 2031006 - | hypothetical protein Rru_A1740 2031665 - 2032000 + | hypothetical protein TERM 2193 2032012 - 2032060 + F 77 -11 -3.60627 | gap 2, opp_overlap 2032006 GTGATCGAAGCCTGG GCTGGTGACGCGCCGGTGGGCGCC ATC GGCGCCCAGCG-CGT-TCAGAAGC TTTACGATGGCATGC TERM 2194 2032412 - 2032388 - g 85 -5.6 -5.10933 | gap 1, overlap 2032389 2032390 TCACCCAAAACAAAA CGTCGGCCCGG GTCG CCGTGCCG-CA TTCGCCCTGGGTCCA TERM 2195 2032523 - 2032549 + G 70 -13.1 -3.02144 | gap 1, opp_overlap 2032521 2032518 ACTCCACCAACCAGC CGTGGCGGGAAG ATCA CTTCC-GCCACG TCTTCGCCGAGATCC Rru_A1741 2032027 - 2032863 + | Phage integrase TERM 2196 2032887 - 2032900 + T 78 -6.7 -4.62471 | opp_overlap 2032887 2032880 GCTAAGAACGAATGA GTTGG ATGT CCAAC TTTTTCAAAGTTGGA TERM 2197 2032980 - 2032952 - T 95 -15.4 -3.81146 | opp_overlap 2032955 TCGTTCAATTAAGAA GCCCCCGATATG GGTTT CATATCAGGGGC TTAGAGTGGTGAGCC Rru_A1742 2033755 - 2033249 - | peptidylprolyl isomerase Rru_A1743 2034370 - 2033852 - | coenzyme A biosynthesis protein TERM 2198 2034143 - 2034167 + g 72 -13.5 -3.14881 | opp_overlap 2034143, overlap 2034130 CAGCAGATTGGCAAA CGGGACGACGG TGA TCGTCGCCCCG TTGGTCGGCAGCTTG TERM 2199 2034167 - 2034143 - G 81 -15 -3.59738 | opp_overlap 2034143 2034130 CAGCAGATTGGCAAA CGGGACGACG GTGAT CGTCGCCCCG TTGGTCGGCAGCTTG Rru_A1744 2037188 - 2034357 - | DNA gyrase subunit A TERM 2200 2036492 - 2036434 - G 83 -15.3 -3.58329 | overlap 2036435 GAAATATCTTCGAAA TGGGTGCG-GCCGCGCATGATGACCGAGC CGC GCCCGGTCAG-ATGGGCGGCGCGCACGCC CGAGCGCCCGAGGAT TERM 2201 2036491 - 2036435 - G 87 -18.8 -2.74515 | overlap 2036434 AAATATCTTCGAAAT GGGTGCG-GCCGCGCATGATGACCGAGC CGC GCCCGGTCAG-ATGGGCGGCGCGCACGC CCGAGCGCCCGAGGA TERM 2202 2037340 - 2037303 - R 75 -14.2 -2.83822 | gap 2, opp_overlap 2037303, overlap 2037300 GGCATCGGATAATCA GGCCGATCAGCCGGCTGC GAAC GCAGCCGGCCG--CGACC TTTTCGCGCTGCGGC TERM 2203 2037303 - 2037340 + r 80 -9.8 -4.11216 | gap 2, opp_overlap 2037300 2037303 GGCATCGGATAATCA GGCCGATCAGCCGGCTGC GAAC GCAGCCGGCCG--CGACC TTTTCGCGCTGCGGC TERM 2204 2037412 - 2037431 + r 75 -2.8 -5.00616 | opp_overlap 2037427 2037428, overlap 2037395 CGGCCCCATAAAGGG CAAGGCTT TGAA GAACCTTG TTTTTTCGAGAACAA Rru_A1745 2038051 - 2037494 - | single-strand binding protein TERM 2205 2038203 - 2038162 - R 100 -18.8 -5.31275 | opp_overlap 2038168 2038170, overlap 2038164 TTTCACCAGAAAAAA GTCAAAAACCCGGCGAGG GGGATG CCCCGCCGGGTCTTTGGC AACCAAACCAGAGAG TERM 2206 2038201 - 2038164 - R 95 -20 -2.86102 | opp_overlap 2038168 2038170, overlap 2038162 TCACCAGAAAAAAGT CAAAAACCCGGCGAGG GGGATG CCCCGCCGGGTCTTTG GCAACCAAACCAGAG TERM 2207 2038168 - 2038197 + r 74 -11.4 -3.53012 | gap 1, opp_overlap 2038164 2038162, overlap 2038170 CAGAAAAAAGTCAAA AACCCGGCGAGGG GGATG CCC-CGCCGGGTC TTTGGCAACCAAACC TERM 2208 2038170 - 2038195 + r 81 -14 -3.34398 | gap 1, opp_overlap 2038164 2038162, overlap 2038168 GAAAAAAGTCAAAAA CCCGGCGAGGG GGATG CCC-CGCCGGG TCTTTGGCAACCAAA Rru_A1746 2039329 - 2038223 - | extracellular ligand-binding receptor TERM 2209 2039409 - 2039429 + r 72 -11.2 -3.29144 | GCCCGATCCCCAATC CGGGTATC CTTGC GATACCCG TTATGCCCCGGATCC Rru_A1747 2039994 - 2039653 - | hypothetical protein Rru_A1748 2040716 - 2039994 - | ABC transporter component Rru_A1749 2041653 - 2040709 - | ABC transporter component Rru_A1750 2043008 - 2041650 - | inner-membrane translocator TERM 2210 2042964 - 2042981 + g 80 -14.1 -3.66178 | GCCGATCTGCAACCC GCCGGCG CCAG CGCCGGC TTTGGCGTTGAGGGG Rru_A1751 2043922 - 2043008 - | inner-membrane translocator TERM 2211 2044085 - 2044112 + H 72 -2.8 -4.86731 | gap 1 ACAATAGGTCCATCC CTTTGCGCAATTC TTA GAATTCC-CGAAG TTTTGTTTGCAACCG TERM 2212 2044152 - 2044142 - H 90 -4.6 -5.31275 | opp_overlap 2044139 GGCGACCATAAAAAA GGCA ATC CGCC TTCTTGATGGGCAGC uvrA 2044331 - 2047183 + | excinuclease ABC subunit A Rru_A1753 2048201 - 2047212 - | high-affinity nickel-transporter TERM 2213 2047452 - 2047431 - G 74 -15.1 -2.94416 | CAGGGCCATGACATA GGCGGCGAG GATG CCCGCCGCC CATAGCCCCAGACCA Rru_A1754 2048848 - 2048198 - | hypothetical protein TERM 2214 2048360 - 2048374 + g 73 -9.2 -3.96148 | CAGGGCCGGGGTGAT CTGGGC GGC GCCCGG TTTGTCCTCGAGCAA Rru_A1755 2049074 - 2049508 + | hypothetical protein Rru_A1756 2049945 - 2049526 - | hypothetical protein TERM 2215 2049576 - 2049553 - G 77 -5.2 -4.58685 | AAAGCGTCCTAAAAA GTCGTCGATC TCGC GATCGCTGAC GATGTCATAGCGGTG TERM 2216 2049753 - 2049739 - G 77 -4.2 -4.81083 | GCCAACGACGAAAAA CGCC TTGCCCT GGCG GTCATCCTCGTTGCG TERM 2217 2050603 - 2050620 + G 74 -5.5 -4.57073 | ATCGCCGAGGCGACC GGCGAGA CCAG TCTGGCC TTTTTCGACGCCATC Rru_A1757 2050135 - 2051583 + | tRNA (uracil-5-)-methyltransferase Gid TERM 2218 2051647 - 2051628 - T 100 -15 -5.60993 | opp_overlap 2051630 TTCCTCACAAAAAAA CAGGCCCG GAAA CGGGCCTG TTGAGAGGGATAGGG TERM 2219 2051853 - 2051827 - T 86 -13.6 -3.53012 | CCTTCCGGGGGGAAA TCGGGCGTCCAC GAC GGGGGCGCCCGA AAGCGGCAGTGGATA TERM 2220 2051910 - 2051873 - T 93 -14.8 -3.80733 | GGCAGTGGATAAGAA CGCCCGCAGGCGAC GGTGTATGAT GACGCCCGCGGGCG GTCAGTGCATGCCCG Rru_A1758 2052130 - 2051912 - | hypothetical protein Rru_A1759 2053189 - 2052341 - | putative phytoene synthase protein TERM 2221 2052407 - 2052380 - G 80 -14.8 -3.43961 | opp_overlap 2052386 CCAGAACAGCGAGAA CGGCCGGCGGAC GATG GTCCACAGGCCG GGATCGGCCGGGTCG TERM 2222 2053594 - 2053609 + G 75 -3.2 -4.82901 | overlap 2053595 CAACAATGCCGCCCA GGTGTG GAAC CACACG TTTTTCTGGAACAGC TERM 2223 2053662 - 2053623 - g 70 -12.9 -3.01712 | gap 3 CGTTTTTCTGGAACA GCCTGTCGCCGACCGGC-GG CGG CCAGCCGACCGGCG-C-GGC CAAAGAGGCGATCGA Rru_A1760 2053286 - 2053969 + | superoxide dismutase TERM 2224 2054039 - 2054017 - f 70 -10.4 -3.53012 | overlap 2054018 TTTGGCCCCCGCAAA GGGGCCGGCG CGT CGCCGTCGCC GCCCGCCACGGTTGC TERM 2225 2054183 - 2054212 + G 76 -6.4 -4.44667 | overlap 2054167 TCCATCGCCCGGCTT TTCGTTCAGGCC GGGGAA GGCCTTTACGAA TTTCTTCTTGGCGGC Rru_A1761 2054120 - 2054704 + | GCN5-related N-acetyltransferase TERM 2226 2054719 - 2054752 + T 86 -18.1 -2.80077 | overlap 2054716 2054746 ACAAGGCCCCTCTTT CCGCCGCTCGCCGGA TCGC TTCGGCGGGCGACGG TCGCTTTTATAGGGC TERM 2227 2054746 - 2054756 + T 74 -6.8 -4.3739 | overlap 2054719 2054716 GGATCGCTTCGGCGG GCGA CGG TCGC TTTTATAGGGCGATC Rru_A1762 2055133 - 2054759 - | hypothetical protein TERM 2228 2055057 - 2055037 - G 71 -9 -3.78934 | gap 1 CGGGGGTGACAAGAA GCGAGC-CC AGAT GGCGCTCGC CGCTCACCCGGAAGC Rru_A1763 2056224 - 2055169 - | protein translocase subunit secF TERM 2229 2055237 - 2055247 + g 74 -2.4 -4.81249 | overlap 2055224 2055223 GTTTCCCGGCGGCGA CGGC GGG GGCG TTTTTGGCTTTGCCC Rru_A1764 2057706 - 2056240 - | SecD export membrane protein TERM 2230 2056740 - 2056689 - G 72 -12.9 -3.17051 | gap 1, opp_overlap 2056734 2056739, overlap 2056672 2056687 2056703 CGGCGATCAGGAAGA CG-GTCACCGCCAAAGCCCCCGCC GCGCT GGCCAAGGCGCCGGCGGCGACGCG ATCGGCGCCCAGGCT TERM 2231 2057671 - 2057641 - G 100 -16.2 -4.87133 | overlap 2057661 ATTGGCTAAAGAAAA GGTGATCCCGGCCA GAA CGACCAGGATCACC GGAATGGCTTTCCAC Rru_A1765 2058345 - 2057914 - | protein translocase subunit yajC TERM 2232 2058429 - 2058459 + H 81 -5.3 -4.77173 | gap 1, opp_overlap 2058403 2058429 2058427 2058430, overlap 2058430 CGCCGCTTGCAAACA CCCAG-GGCCGGGG ATTA TCCAGGCCGCTGGC TTTCTTTTATGAACA TERM 2233 2058475 - 2058490 + H 74 -6 -4.57073 | opp_overlap 2058475 2058473, overlap 2058476 TTTCTTTTATGAACA CCCGCG CCCG CGCGGC TTTTTCCCCGGAGTA Rru_A1766 2058514 - 2059404 + | hypothetical protein Rru_A1767 2060819 - 2059422 - | peptidase M23B Rru_A1768 2061475 - 2060816 - | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 2234 2061196 - 2061175 - G 71 -9.3 -3.89346 | GTTCGATCGTATAAA CCCGCCGGC ACAA GCGGGCGAG AACGGCGGTCTGGTA Rru_A1769 2062286 - 2061501 - | 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase TERM 2235 2062125 - 2062138 + g 70 -5.9 -4.29326 | ATGGATGGTCAGGGC GTGGC CGGC GCCGC TTTGTTCGGTTTCCG Rru_A1770 2063557 - 2062286 - | seryl-tRNA synthetase Rru_A1771 2064618 - 2063647 - | Sec-independent protein translocase TatC TERM 2236 2064531 - 2064563 + g 86 -7 -4.90381 | gap 1, opp_overlap 2064527, overlap 2064527 ACCATAAAAGACGGC TG-CGCAGTTCGATC AGAT GATCGATCAGCGGCA TTTTCTTGTCTTCAA TERM 2237 2064638 - 2064661 + r 93 -11.7 -4.4261 | gap 1, opp_overlap 2064638 2064635, overlap 2064638 TTCCTCGATAAACGA CC-GCCCCGG GGAAA CCGGGGCCGG TTTTAGTCTTGCGGC Rru_A1772 2065116 - 2064664 - | twin-arginine translocation protein TatB TERM 2238 2065178 - 2065140 - R 76 -13.9 -3.09831 | gap 1, overlap 2065137 GCCACTGCAAAACGA CCGTCTCCTCCCACACGC GGGC GCG-GCGGGAAGAGACTG GGAAGCGAAAGGCTT Rru_A1773 2065483 - 2065193 - | twin-arginine translocation protein TatA/E Rru_A1774 2066476 - 2065757 - | condensin subunit ScpB Rru_A1775 2067285 - 2066473 - | condensin subunit ScpA TERM 2239 2067092 - 2067059 - G 74 -12.3 -3.56273 | overlap 2067060 GCCATCACCAGATAA TCGCCGGCCAGTTCC AGGT GGATCTGGCGGGCGC GGGCGACGAAGGCCA TERM 2240 2067091 - 2067060 - G 75 -15.8 -2.73443 | overlap 2067059 CCATCACCAGATAAT CGCCGGCCAGTTCC AGGT GGATCTGGCGGGCG CGGGCGACGAAGGCC Rru_A1776 2067992 - 2067306 - | peptidase M50 TERM 2241 2067828 - 2067801 - G 70 -8.4 -3.96148 | gap 1, overlap 2067783 2067784 GGCGCCGACCAGAAA CAGCAGCCCCGGC AGC ACCAGGG-TGCCG AAGGGATCGACATGG Rru_A1777 2069020 - 2068001 - | Beta-N-acetylhexosaminidase Rru_A1778 2070080 - 2069010 - | hypothetical protein TERM 2242 2069277 - 2069249 - G 73 -12.3 -3.41527 | opp_overlap 2069252 CAAGCTGGACGACAA CCCCCGTCCCGCC GGC GGCCGGACGGATG GTGGGCAGCGAGGCG TERM 2243 2069654 - 2069679 + g 72 -6.7 -4.21194 | overlap 2069655 CCACGGGCGGCGTCA TCGGCTGCTCG GGAT CGGGCAGCAGC TTTTCGGTGGTCGCG Rru_A1779 2071858 - 2070080 - | arginyl-tRNA synthetase TERM 2244 2071812 - 2071830 + g 79 -4.4 -4.84146 | overlap 2071813 TCGGCCTGGAGGGCG GCGACCTG CGC CAGGACGG TTTCTTTTATGTCGT Rru_A1780 2073051 - 2071855 - | deoxyguanosinetriphosphate triphosphohydrolase TERM 2245 2073352 - 2073374 + G 88 -9.8 -4.36931 | opp_overlap 2073324 TGCTGCGGGTCACCG TCTCGGGCGG CGG CTGCTCGGGA TTTTCCTATGGCTTC Rru_A1781 2073213 - 2073587 + | HesB/YadR/YfhF Rru_A1782 2074176 - 2073706 - | copper/Zinc superoxide dismutase TERM 2246 2074279 - 2074238 - R 82 -12.9 -3.63569 | gap 1 CCAAGCGGTGAATAA GCGGGTGG-TCCGCCCATCC CGG GAGGGGGCGGAGCCACCGGC GTTCCCGGTGCGGCT Rru_A1783 2075217 - 2074516 - | hypothetical protein TERM 2247 2075857 - 2075882 + G 85 -10.4 -4.28049 | gap 1 CTATACCGATGCCCT GC-GCGCCCTG AACCC CGGGGCGCCGC TTTTCACCTTTTGGG Rru_A1784 2075264 - 2076064 + | exodeoxyribonuclease III Rru_A1785 2076106 - 2076492 + | membrane protein-like TERM 2248 2076514 - 2076554 + T 82 -11.2 -3.86015 | ACGCGAATTCTGCGC CGCCGGGACTGTTCGT GGGGGTGAA GCGGATAGTCCCGGTG TTTATGGCCACGATG TERM 2249 2076607 - 2076663 + T 91 -4.7 -5.49809 | gap 3, opp_overlap 2076619 2076624, overlap 2076624 GGGTTCTTTCTTCGA TGACCAGAATAACAAAACGCCCTCCGAA TCGC TTCGGAGGGCGTTTT-TTGTG--GGACG TTTTTTTAAGATTTA TERM 2250 2076654 - 2076619 - T 100 -19.2 -3.85864 | opp_overlap 2076607 2076624, overlap 2076624 CGATGACCAGAATAA CAAAACGCCCTCCGAA TCGC TTCGGAGGGCGTTTTT TGTGGGACGTTTTTT TERM 2251 2076649 - 2076624 - T 100 -19.1 -4.9645 | opp_overlap 2076624 2076607, overlap 2076619 ACCAGAATAACAAAA CGCCCTCCGAA TCGC TTCGGAGGGCG TTTTTTGTGGGACGT TERM 2252 2076624 - 2076649 + T 100 -19.1 -5.24531 | opp_overlap 2076619 2076624, overlap 2076607 ACCAGAATAACAAAA CGCCCTCCGAA TCGC TTCGGAGGGCG TTTTTTGTGGGACGT Rru_A1786 2078553 - 2076676 - | dihydroxyacid dehydratase TERM 2253 2078579 - 2078563 - R 100 -12.3 -5.06451 | opp_overlap 2078572 GATCACCCGAAAAAA TCCCCGA CCG TCGGGGA GGGCGACTCTACTCC Rru_A1787 2079428 - 2078637 - | cyclic nucleotide-binding domain-containing protein TERM 2254 2079358 - 2079381 + g 86 -6 -5.0133 | opp_overlap 2079358 2079361 2079363 CACGTTTCGCAAGAA GTAGATACGA AAGA TCGTATCGGC TTTTTTAGGGCGGTC TERM 2255 2079514 - 2079541 + H 78 -7 -4.64766 | GCATGGCTGACTTCT TCTTTGGATCCC TGTC GGCCTCCAAAGA TTTTTCCAGTCTCCA Rru_A1788 2079572 - 2080009 + | response regulator receiver domain-containing protein TERM 2256 2080320 - 2080333 + G 79 -6.7 -4.67982 | CCCGGCCCGCATCGA GCTTG GCCG CAAGC TTTTCTTCGATCCGC Rru_A1789 2080153 - 2081199 + | cytochrome-c peroxidase TERM 2257 2081274 - 2081223 - T 83 -17.5 -2.52464 | gap 2, opp_overlap 2081233, overlap 2081234 CCCGCTCTTAATCGA CGGATAGCA-AAGC-AAGGCGGCCC CCGT GGGCCGCCTTCGCCTATTCCATCCG ACGACGAAAGAGCCA TERM 2258 2081233 - 2081263 + T 76 -13.3 -3.08679 | gap 1, opp_overlap 2081223 2081234 ATCGACGGATAGCAA AGC-AAGGCGGCCC CCGT GGGCCGCCTTCGCC TATTCCATCCGACGA TERM 2259 2081262 - 2081234 - T 100 -16.8 -3.84825 | gap 1, opp_overlap 2081233, overlap 2081223 TCGACGGATAGCAAA GC-AAGGCGGCCC CCGT GGGCCGCCTTCGC CTATTCCATCCGACG Rru_A1790 2082378 - 2081263 - | ABC-2 transporter component TERM 2260 2082283 - 2082273 - G 77 -6.8 -4.56729 | AGGAAAAGACGAAAA GCTG GAG CAGC GGCGGGACGATCAGG Rru_A1791 2083510 - 2082380 - | ABC-2 transporter component TERM 2261 2083480 - 2083451 - G 70 -10.7 -3.62096 | overlap 2083479 GCGCAGGATCTGAAA CACCTCCTTGCGC ACCA GGGCAAGGAAGCG CCGGCGTCCCAGAGA Rru_A1792 2085249 - 2083507 - | ABC transporter component TERM 2262 2085297 - 2085284 - R 100 -9.5 -5.02074 | GCATCGGGTAAAAAA CGCGG ATCA CCGCG GGGACGGCGAGGAAC Rru_A1793 2086333 - 2085290 - | hypothetical protein Rru_A1794 2087019 - 2086330 - | TetR family transcriptional regulator TERM 2263 2087125 - 2087105 - R 70 -10.3 -3.53012 | TTTTTCGCCGCCAAA GCCAGAGGC GAA GCCGCCGGC AAACAGGCTCAGAGA Rru_A1795 2088048 - 2087134 - | HAD family hydrolase TERM 2264 2087840 - 2087814 - G 89 -14.5 -4.08706 | gap 1 TGGTCACCACACAAA CCGCCTTGCCGC GCGC GCG-CAAGGCGG CAAAAGCCTCCAGCG TERM 2265 2087948 - 2087915 - G 100 -23.3 -2.83715 | opp_overlap 2087920, overlap 2087920 TCGAGCACGATCAGA TCGAAGGCGTCGGCG ACGG CGCCAACGCCTTCGA TGCGACGACAGCCGC TERM 2266 2087920 - 2087943 + g 72 -13.8 -3.05384 | opp_overlap 2087915 2087920 CACGATCAGATCGAA GGCGTCGGCG ACGG CGCCAACGCC TTCGATGCGACGACA TERM 2267 2087943 - 2087920 - G 78 -16 -3.14944 | opp_overlap 2087920, overlap 2087915 CACGATCAGATCGAA GGCGTCGGCG ACGG CGCCAACGCC TTCGATGCGACGACA valS 2090700 - 2088061 - | valyl-tRNA synthetase Rru_A1797 2091439 - 2090813 - | hypothetical protein TERM 2268 2091381 - 2091350 - G 75 -7 -4.32857 | opp_overlap 2091344 2091338, overlap 2091351 CTCGGGAAAGACAAA GGGCTCGGGCTCCG GTTC CGGGGCCCGCTCCT CGGCCTTTTCCTCGT TERM 2269 2091577 - 2091606 + r 86 -18.7 -2.83715 | opp_overlap 2091577, overlap 2091579 CCTTGGAAACAAAAA CACCGGAAGAGTC GATC GGCTCTTCCGGTG TCTGATGATCATCAG TERM 2270 2091606 - 2091577 - R 100 -16.5 -5.27335 | opp_overlap 2091577 2091579 CCTTGGAAACAAAAA CACCGGAAGAGTC GATC GGCTCTTCCGGTG TCTGATGATCATCAG TERM 2271 2091579 - 2091604 + r 81 -15.5 -2.96692 | opp_overlap 2091577, overlap 2091577 TTGGAAACAAAAACA CCGGAAGAGTC GATC GGCTCTTCCGG TGTCTGATGATCATC Rru_A1798 2093252 - 2091636 - | Type I secretion outer membrane protein, TolC TERM 2272 2091699 - 2091709 + g 72 -8.2 -4.11394 | overlap 2091687 ACTGTCGCCGTCGAT CGGC GGC GCCG TTTTGACGATCAGAT TERM 2273 2092320 - 2092263 - G 76 -14.9 -3.18433 | overlap 2092292 ATGCGAAAAACTATA GGACACC-TCGGCGTTCAGCGTCGGCA GAAGCT TGCCG-CGCTGATCGCGGATGGCGGCC TGGGCCTGACGCCAG TERM 2274 2093305 - 2093256 - R 74 -12 -3.55453 | gap 1, overlap 2093252 AACGCAAAACACCAA CGCCGAGGCCCCCGACCGACGGC CGCCC GCCCCCGATCGGCGGCC-CACCG GACGGGATGGGATGG Rru_A1799 2093977 - 2093327 - | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 2275 2093888 - 2093840 - G 86 -18.1 -2.87211 | ATCCTCGTCGACATA GGCGACGCCGCGAAAGGCCTTGG GAA CGAAGATCTCCCGCGGCACCGCC GCCATCGCCTCGATG TERM 2276 2094535 - 2094510 - H 100 -17.7 -5.10461 | opp_overlap 2094510 CGGAGCCAATAAAAA CCCCTGAAACC GCAA GGTTTCAGGGG TTTTTTCGTTGAAAA TERM 2277 2094510 - 2094535 + H 100 -17.7 -5.26875 | opp_overlap 2094510 CGGAGCCAATAAAAA CCCCTGAAACC GCAA GGTTTCAGGGG TTTTTTCGTTGAAAA TERM 2278 2094609 - 2094580 - H 78 -6.9 -4.58395 | opp_overlap 2094581, overlap 2094581 TTGATTGGGGAAAAA TGCCGCGCCGCCC TCAT GGGCAGAGGGGCT TGTGAAGGGATCGAC Rru_A1800 2094653 - 2094916 + | prevent-host-death protein Rru_A1801 2094921 - 2095352 + | hypothetical protein Rru_A1802 2096729 - 2095413 - | chemotaxis sensory transducer TERM 2279 2095673 - 2095723 + g 74 -10.3 -3.78775 | overlap 2095711 AGGCATTCTCGCGAA CCTGCTCGATCGTCGCGGCTATT CCCTT GATCGCCTCGACGGTCTTGCGGG TTTCCTCCTGAACGG TERM 2280 2096964 - 2096952 - R 74 -4.1 -4.7923 | overlap 2096953 AGCCAAAGAAATAAA CTCTC TCT GAGAA ACAAGAGTTAGACTT TERM 2281 2097146 - 2097172 + r 80 -15.1 -3.05596 | overlap 2097127 CGTTCCGGGCGTCGG CGGGCGGGGAC TTCTC GTCCCCGCCCC TTCCCTCACGCGCTC Rru_A1803 2098002 - 2097178 - | undecaprenyl-diphosphatase TERM 2282 2097852 - 2097870 + g 83 -3.1 -5.1356 | gap 1, overlap 2097855 2097858 CGCCGAGCTGGATGA CGATGACG AAAA CGTCG-CG TTTTTGTTCATCAAG TERM 2283 2098050 - 2098031 - H 89 -10.6 -4.56597 | opp_overlap 2098039 2098041 TCCGCTTGTGAAAAA CGGCGCCC TCGC GGCCGCCG ACGGCCGGCATTCTT TERM 2284 2098843 - 2098856 + G 70 -5.9 -4.25074 | TCGATTGGGCCAAGG GCCGG GGCA TCGGC TTTTCCCATTTCGTG TERM 2285 2100783 - 2100766 - g 79 -11.3 -3.99678 | ATCCCGACAATGAAA CCACCGA GTTC TCGGTGG TGGTGCGCTCCGATC Rru_A1804 2098272 - 2101013 + | N-acetyltransferase Rru_A1805 2103654 - 2100994 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2286 2103774 - 2103728 - H 78 -5.1 -4.8622 | gap 1, overlap 2103729 2103742 GGGTCGAAGGAAAAA CGTCGCCCATATTACG-TGGCG ACCG CGCCAACGCAATCCCCACGACG CAAACGGCGGCGCAT TERM 2287 2103874 - 2103854 - H 79 -9.6 -4.208 | opp_overlap 2103854 2103850 2103856 GCGCAAAACGAGAAA GGGGGCGC TCGCG GCGCCCTC TCGTCTTTCCTCACG TERM 2288 2103854 - 2103874 + H 70 -12.5 -2.87501 | opp_overlap 2103854, overlap 2103850 2103856 GCGCAAAACGAGAAA GGGGGCGCT CGC GGCGCCCTC TCGTCTTTCCTCACG Rru_A1806 2104057 - 2104857 + | MotA/TolQ/ExbB proton channel Rru_A1807 2104864 - 2105553 + | OmpA/MotB Rru_A1808 2105931 - 2105578 - | hypothetical protein Rru_A1809 2106527 - 2105982 - | sigma-24 (FecI) Rru_A1810 2106966 - 2106532 - | hypothetical protein Rru_A1811 2108010 - 2107162 - | Beta-lactamase-like Rru_A1812 2108765 - 2108007 - | hypothetical protein TERM 2289 2108094 - 2108051 - G 70 -10.8 -3.50853 | gap 1, opp_overlap 2108087, overlap 2108052 CGGCTTGAACGAGAA CGGGCGAGCCGAGCTGCAGGC CCA GCC-GCTGATCGGCGCGGCCA CGACTGACGGCGATT TERM 2290 2108159 - 2108143 - G 100 -5.7 -5.93809 | opp_overlap 2108150 TTGGTATAAAAAAAA GCCGACC CGG GGGCGAC GTCGCCAAAGGTCCG TERM 2291 2109713 - 2109729 + G 70 -10.1 -3.72576 | opp_overlap 2109724 ACCGTGCGCTACTTC TCGTCGG AAA CCGGCGA TTTGGTGCGCAACCG Rru_A1813 2108933 - 2110099 + | peptidase M20D, amidohydrolase Rru_A1814 2110756 - 2110130 - | carbon monoxide dehydrogenase subunit G Rru_A1815 2110944 - 2111915 + | glycolate reductase TERM 2292 2113372 - 2113338 - g 77 -10.6 -3.8512 | overlap 2113341 GATGTACCAGAAGAA CAAGCTCGTCCAGCCC GGC GGCCTGACCGTGCTTG GCCATGCCCTCGACC Rru_A1816 2111959 - 2113761 + | Poly(R)-hydroxyalkanoic acid synthase, class I Rru_A1817 2116682 - 2113845 - | TPR repeat-containing protein TERM 2293 2115787 - 2115810 + g 70 -5.9 -4.2558 | opp_overlap 2115782 GGACCAACAAGCCGC CCTGGTGGC ATGTGA GCCGCTGGG TTTTCCTGGGCGGTA TERM 2294 2116302 - 2116292 - G 75 -4.6 -4.63592 | overlap 2116273 TCGCAATAAAAACAA CGCC GAG GACG TGATCAACGATATGC TERM 2295 2116865 - 2116905 + r 84 -11.1 -4.08767 | gap 1, opp_overlap 2116871, overlap 2116869 2116895 CCAGTCTTGGGCATA TGAAAACGGGGGCCCGGA TCACTC TCCGGGCCCCCGCGT-CG TTTTCCAGCGATCGC TERM 2296 2116869 - 2116902 + r 80 -15.2 -3.08211 | opp_overlap 2116871, overlap 2116865 2116895 TCTTGGGCATATGAA AACGGGGGCCCGGA TCACTC TCCGGGCCCCCGCG TCGTTTTCCAGCGAT TERM 2297 2116900 - 2116871 - R 100 -22.2 -4.34402 | opp_overlap 2116869 2116865 2116895 TTGGGCATATGAAAA CGGGGGCCCGGA TCACTC TCCGGGCCCCCG CGTCGTTTTCCAGCG hppA 2119034 - 2116926 - | membrane-bound proton-translocating pyrophosphatase TERM 2298 2119237 - 2119224 - R 85 -2.3 -5.41359 | AATGAAAGGAAAAAA CCCCA AATT TGGCG CGCTTTCGCCGCCCT Rru_A1819 2119745 - 2119260 - | hypothetical protein TERM 2299 2119619 - 2119562 - G 91 -12.5 -4.26076 | gap 1, overlap 2119563 TCATCGGCAGGAAAA CCGGTGGCGGCCCCAGCCGCTCGATC ACCGTCG GCTCGCGCG-CCGGGGCCTCCGCCGT CGGCGGGGCGGGAAA TERM 2300 2119618 - 2119563 - G 78 -16 -3.15324 | gap 1, overlap 2119562 CATCGGCAGGAAAAC CGGTGGCGGCCCCAGCCGCTCGATC ACCGTCG GCTCGCGCG-CCGGGGCCTCCGCCG TCGGCGGGGCGGGAA Rru_A1820 2120735 - 2119752 - | thiamine-monophosphate kinase TERM 2301 2120425 - 2120395 - G 74 -2.5 -4.74504 | gap 2, overlap 2120396 2120397 AGGCCAACGGAAAAA TCG-GCGAGGTC-GG CGC CCAGACCGCGGGCGA AGCCCTCCATCCAGG Rru_A1821 2121300 - 2120743 - | NusB antitermination factor TERM 2302 2121350 - 2121325 - R 70 -10.3 -3.54424 | opp_overlap 2121325 2121329, overlap 2121328 CTCCATCTCGGCAAA CCACGCCCGCC GGAC GGCGGGGGCAG GCTTATAACCCCATC Rru_A1822 2121814 - 2121353 - | 6,7-dimethyl-8-ribityllumazine synthase TERM 2303 2121533 - 2121548 + g 73 -6 -4.32034 | CTTGATGCCATCCAT CGCCAC CCGC GCGGCG TTTTCGTAATGGTCG Rru_A1823 2122955 - 2121822 - | GTP cyclohydrolase II Rru_A1824 2123538 - 2122948 - | riboflavin synthase subunit alpha Rru_A1825 2124664 - 2123561 - | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase Rru_A1826 2125166 - 2124708 - | transcriptional regulator NrdR TERM 2304 2125080 - 2125102 + g 82 -17 -2.80816 | opp_overlap 2125080, overlap 2125063 GCAAGCCGGGCAGAA GCGCCGCCGT CGA ATGGCGGCGC TGTCCTCCGTGGGGC TERM 2305 2125102 - 2125080 - G 78 -14.8 -3.30159 | opp_overlap 2125080 2125063 GCAAGCCGGGCAGAA GCGCCGCCGT CGA ATGGCGGCGC TGTCCTCCGTGGGGC Rru_A1827 2126502 - 2125210 - | serine hydroxymethyltransferase TERM 2306 2125770 - 2125790 + g 79 -8.1 -4.43844 | opp_overlap 2125764 2125762, overlap 2125772 2125772 TCGACAACACCATGC CGCCGCGCG GGC CGCGCAGGG TTTTATGGGTGGTGG Rru_A1828 2127049 - 2126561 - | ribose-5-phosphate isomerase TERM 2307 2127120 - 2127155 + H 82 -11 -3.86015 | overlap 2127114 2127121 CTTGGCCTGCCCGCT CGCCCGGGGTTTGGGT CATA GCACAACCCCCGGGCC TTTGTCGACGCCATG TERM 2308 2127121 - 2127154 + H 79 -14.5 -2.91395 | overlap 2127114 2127120 TTGGCCTGCCCGCTC GCCCGGGGTTTGGGT CATA GCACAACCCCCGGGC CTTTGTCGACGCCAT Rru_A1829 2127525 - 2127944 + | MucR family transcriptional regulator TERM 2309 2128088 - 2128112 + T 93 -8.5 -5.10933 | GGCGCGCGCGCCCTA CCCTCCCGG CATCGGC CCTGGAGGG TTTTCTTTTGCCTGA Rru_A1830 2128346 - 2128134 - | hypothetical protein Rru_A1831 2128980 - 2128405 - | hypothetical protein TERM 2310 2128693 - 2128665 - G 78 -13.8 -3.53091 | gap 1 ATCCCTGGGCTGAAA GCGCCGGCGCCGC CCGG GCGTCGC-GGCGC ACCGCCTGGGCCACC TERM 2311 2129026 - 2129012 - R 100 -12.8 -4.33907 | CAGAAAGATGGAAAA CGGCGC AAG GCGCCG CGTCGGTCAGGCGCG Rru_A1832 2129665 - 2129033 - | GTP cyclohydrolase Rru_A1833 2130801 - 2129911 - | 3-hydroxyisobutyrate dehydrogenase TERM 2312 2130454 - 2130406 - G 73 -13 -3.31817 | overlap 2130401 AACCATGAAAGTTAA GGTCGCCGCCGCCGCTCCGG CCACCCCAC CCGATACGGGGGCGTCGACC ATCGACAGCCCGGCC Rru_A1834 2131903 - 2130827 - | enoyl-CoA hydratase/isomerase TERM 2313 2131387 - 2131371 - G 75 -11.5 -3.69354 | overlap 2131375 GTGCACAACCCCAAA GCGACCG CGT CGGCCGC GCCGATCCGCGCTCC TERM 2314 2131660 - 2131673 + g 73 -3.7 -4.57569 | opp_overlap 2131661, overlap 2131661 AGAAGGCATCCAGAA AGGCG CTCG CGCCA TTTTTGCCGACCTCA TERM 2315 2131855 - 2131871 + g 80 -9.3 -4.25104 | overlap 2131856 GCCGGTTAAGGGTGA TGGCGCC CAA GGCGCCC TTTTGCTCAAACAGG Rru_A1835 2133078 - 2131939 - | butyryl-CoA dehydrogenase TERM 2316 2133114 - 2133139 + H 88 -6.7 -5.00884 | overlap 2133116 AGCCGGATCCGCTTG GCGCCCGGACC GTTT GGTCTTGGCTC TTTTTTAAGGGAAGT TERM 2317 2133116 - 2133137 + H 71 -7.9 -4.13561 | overlap 2133114 CCGGATCCGCTTGGC GCCCGGACC GTTT GGTCTTGGC TCTTTTTTAAGGGAA Rru_A1836 2133380 - 2134672 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 2318 2134816 - 2134868 + G 76 -15.7 -2.82516 | gap 2, opp_overlap 2134810 GTTATCGAAGGCCGC TCGGCGCGTCAGGCCGTCGACAGCC TGCCC GGC-GTCGACCGCCTGA-GCATCGA TCTGCTGGTCGAGGC Rru_A1837 2134669 - 2135679 + | delta-aminolevulinic acid dehydratase TERM 2319 2135687 - 2135731 + T 100 -15 -4.5442 | gap 1, overlap 2135687 2135688 CGCGCTGATTTTCGA G-AGCGATGGGGGACGGGGCG GAAC CGCCTTATCCCCCATCGCGGC TTTTCTGGTTAACGG TERM 2320 2135687 - 2135730 + T 86 -15.2 -3.3217 | overlap 2135687 2135688 CGCGCTGATTTTCGA GAGCGATGGGGGACGGGGCG GAAC CGCCTTATCCCCCATCGCGG CTTTTCTGGTTAACG TERM 2321 2135688 - 2135729 + T 85 -18.7 -2.5882 | overlap 2135687 2135687 GCGCTGATTTTCGAG AGCGATGGGGGACGGGGCG GAAC CGCCTTATCCCCCATCGCG GCTTTTCTGGTTAAC TERM 2322 2135744 - 2135761 + T 93 -8.4 -5.00884 | opp_overlap 2135757 GGCTTTTCTGGTTAA CGGCCT GGATCA AGGCCG TTTTTTAACGCCCCT Rru_A1838 2136636 - 2135776 - | Alpha/beta hydrolase fold Rru_A1839 2137709 - 2136648 - | TRAP-type C4-dicarboxylate transport system periplasmic component-like TERM 2323 2137048 - 2136993 - G 73 -13 -3.23274 | gap 1 CGGTTGATAATCGAA CCATG-CGCCCGCGCCTTCGGCAAGCA GAA CGCAGGCCGGCGGCGCGGGGGACAGGG TGGTCAGCACATCGA Rru_A1840 2137867 - 2140332 + | penicillin amidase Rru_A1841 2140842 - 2140357 - | flavin reductase-like, FMN-binding Rru_A1842 2141079 - 2141936 + | motA, chemotaxis (motility protein A TERM 2324 2142039 - 2142026 - g 91 -9.5 -4.74801 | CAAGCGGATCAAAAA GGGCG GTCA CGCCC ATCATGGCGGCGCCT TERM 2325 2142277 - 2142313 + G 70 -10.8 -3.53012 | overlap 2142278 CGGCCGTGCAGTTGA CCCTG-CCGCCGCCGACC ATC GG-CGCCGGCGGTCAGGA TTTCAGCGACGCCAA Rru_A1843 2141988 - 2143070 + | OmpA/MotB Rru_A1844 2143067 - 2143588 + | RDD Rru_A1845 2143643 - 2144383 + | arginyl-tRNA-protein transferase TERM 2326 2144867 - 2144829 - g 80 -13.9 -3.65351 | gap 1, opp_overlap 2144860, overlap 2144830 2144832 TGACGGCGATCGAAA CCAGCGCCTGGA-TCCAC CATG GCGGAGCCCAGGCGCTGT GGGACGCCTTGTCGG TERM 2327 2144866 - 2144830 - g 80 -17.4 -2.78996 | gap 1, opp_overlap 2144860, overlap 2144829 2144832 GACGGCGATCGAAAC CAGCGCCTGGA-TCCAC CATG GCGGAGCCCAGGCGCTG TGGGACGCCTTGTCG TERM 2328 2144864 - 2144832 - g 71 -14.2 -2.94144 | gap 1, opp_overlap 2144860, overlap 2144830 2144829 CGGCGATCGAAACCA GCGCCTGGA-TCCAC CATG GCGGAGCCCAGGCGC TGTGGGACGCCTTGT Rru_A1846 2144459 - 2145553 + | twin-arginine translocation pathway signal Rru_A1847 2145652 - 2146554 + | transglutaminase-like Rru_A1848 2148791 - 2146560 - | DNA topoisomerase IV subunit A TERM 2329 2146966 - 2146942 - G 77 -11.3 -3.78775 | overlap 2146943 TCCTCGACGACGAAA CCCCGGCCGCC GCT GGCCGCCAGGA TCAGGCGGCGCGCCG TERM 2330 2147730 - 2147718 - G 70 -6.2 -4.24342 | opp_overlap 2147718 CCGGTGATCAAGAAA GGCG ACCAG CGCC TCCTTCAAGCCCAGC TERM 2331 2148505 - 2148457 - G 72 -11.5 -3.56643 | opp_overlap 2148468 TCGATATTGCCGAAA TTGCCCTGGCCTTCGACCAGCGG ATA CCGCACGGCGAATTCCTGGGCAA GGCGAACCATCGCCT recO 2149586 - 2148828 - | DNA repair protein RecO TERM 2332 2149056 - 2149002 - G 91 -15.6 -4.0162 | gap 1, overlap 2148998 GGGCGACAGCAGAAA GGCCGGCAGGGCAAGCAGCCGCGCC TGCCAC GGCGCGCCCGCCT-CCCGCCCGACC GCCCGGCCGCTGCGC Rru_A1850 2149777 - 2149607 - | hypothetical protein era 2150719 - 2149790 - | GTP-binding protein Era TERM 2333 2150850 - 2150818 - R 87 -17 -3.01924 | opp_overlap 2150835 GATGGCCCCCGAAGA CGGCGATCCGCCCG GACCG CGGGCCGATCACCG CTCGGTCTCCCGTTC TERM 2334 2150907 - 2150879 - R 95 -13.2 -4.10672 | opp_overlap 2150879 2150878 TCAATCTAAATCAAA CCGCGTCCAATG GGGAT CATCGAACGCGG CTTTCACACCCCTGT Rru_A1852 2151597 - 2150932 - | RNAse III TERM 2335 2151634 - 2151621 - R 70 -3.7 -4.66264 | overlap 2151612 2151630 CAAAACCCGGAAAAA CCGAC AAAA GACGG GACAGGCCTTACGCC TERM 2336 2151657 - 2151630 - R 100 -13.5 -4.56887 | gap 1, overlap 2151621 GAAAAACCGACAAAA GACGGGACAGGC CTTAC GCC-GTCCCGTC AACAAAACAAACCAT Rru_A1853 2152428 - 2151691 - | signal peptidase I TERM 2337 2152404 - 2152414 + g 89 -2.4 -5.32882 | TGATCGTCTCGCCCA GGCC CCC GCCC TTTTTTCTGCTCATG Rru_A1854 2153311 - 2152562 - | pyridoxal phosphate biosynthetic protein PdxJ Rru_A1855 2153973 - 2153341 - | hypothetical protein Rru_A1856 2156125 - 2153978 - | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA TERM 2338 2155877 - 2155858 - G 75 -9.2 -4.10161 | CATCATTGCCGAAAA GCTGGCGG ACAT CCTCCAGC GTCGCCTCGGTGTCC TERM 2339 2155999 - 2155986 - G 70 -2.3 -4.62336 | ATGGGATGGGAAAAA TAGGG ATCG CCCGA GGCCCGCAATTGCGA Rru_A1857 2156697 - 2156281 - | RNA polymerase, omega subunit TERM 2340 2156460 - 2156479 + g 75 -9.2 -4.08216 | AATCGTCTTCCTCGG GCTCGTCG ATTT CGACGTGC TTTTGCAGCCCCTGG Rru_A1858 2157295 - 2156810 - | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase TERM 2341 2156947 - 2156928 - G 77 -7.8 -4.3295 | GGGAATAAAACGAAA CCGCGC TCGGCCAT GCGCGG ATGGGGCAGCAGCGG TERM 2342 2157566 - 2157580 + G 75 -3.4 -4.77165 | overlap 2157563 TTCGCCGCCAAGGGC CGGCTG ATC CGGGCG TTTTATTATACCGCC Rru_A1859 2157440 - 2158084 + | hypothetical protein Rru_A1860 2158112 - 2158756 + | uracil-DNA glycosylase superfamily protein Rru_A1861 2158994 - 2159905 + | hypothetical protein TERM 2343 2160317 - 2160294 - g 72 -4.4 -4.52143 | gap 1, overlap 2160298 TGCAAAGACAAGAAA GCGAGTCC-GC TGG GCTGGTCACGC TAACGAAGTGACCAC Rru_A1862 2160068 - 2160328 + | hypothetical protein Rru_A1863 2160992 - 2160405 - | glutathione peroxidase smpB 2161539 - 2161057 - | SsrA-binding protein Rru_A1865 2162464 - 2161583 - | dihydrodipicolinate synthase TERM 2344 2161885 - 2161859 - G 70 -13.6 -3.0094 | GGTGACCGAGATACA GCCCACCCCGCC CTG GGCGAGGAAGGC GGTCGCCGTGGCGTC TERM 2345 2163181 - 2163232 + G 74 -12.1 -3.53012 | gap 1, opp_overlap 2163194, overlap 2163182 CCTATCTGGCCTCGG GCGCCCGCGA-CAAGGCGGCGCGG CTGAT CCGCTCGGCCTGGGTCGCGGGGGA TTTCACCGCCAGCCA TERM 2346 2163182 - 2163231 + G 75 -15.6 -2.71712 | gap 1, opp_overlap 2163194, overlap 2163181 CTATCTGGCCTCGGG CGCCCGCGA-CAAGGCGGCGCGG CTGAT CCGCTCGGCCTGGGTCGCGGGGG ATTTCACCGCCAGCC Rru_A1866 2162763 - 2164757 + | lytic transglycosylase, catalytic Rru_A1867 2165365 - 2164886 - | hypothetical protein Rru_A1868 2166731 - 2165349 - | peptidase M23B Rru_A1869 2167040 - 2167600 + | phosphatidylglycerophosphatase Rru_A1870 2167617 - 2168228 + | CinA-like Rru_A1871 2168421 - 2170067 + | Na/Pi cotransporter II-related Rru_A1872 2170161 - 2170745 + | TetR family transcriptional regulator Rru_A1873 2171700 - 2170777 - | hypothetical protein Rru_A1874 2172034 - 2171705 - | hypothetical protein TERM 2347 2173267 - 2173285 + G 70 -11.7 -3.37487 | overlap 2173264 ACGGTTTTGGCCGAT CGCGGAC AGGTG GTCCGCG TCTTTCAGAATCTGA TERM 2348 2173676 - 2173641 - g 71 -12.4 -3.29325 | overlap 2173639 CCCCGACAACCAAGA CCGTCGCCGCCGCGAC CAAG GCCGGGGCGCTGACGG GAGGGGGCGCGATCA Rru_A1875 2172205 - 2173710 + | multi-sensor Signal transduction histidine kinase Rru_A1876 2174132 - 2173689 - | cyclase/dehydrase Rru_A1877 2175088 - 2174144 - | lipoyl synthase Rru_A1878 2176496 - 2175096 - | dihydrolipoamide dehydrogenase Rru_A1879 2177867 - 2176545 - | dihydrolipoamide acetyltransferase, long form Rru_A1880 2179296 - 2177890 - | pyruvate dehydrogenase subunit beta TERM 2349 2178685 - 2178661 - G 75 -9.1 -4.09685 | overlap 2178662 CCGCAGCCCGGAAAA CGCCGCGCCGG TGG CCAGACCGGCG AAGCCCATCTCGGTG TERM 2350 2178864 - 2178886 + g 72 -5.5 -4.30844 | CCTCGCGCACCGACA GCGTCACGA ATTTA TCGTAGCGC TTTTCCTCCTGGCGT TERM 2351 2178997 - 2179030 + g 71 -12.3 -3.31792 | opp_overlap 2178996 CGTCTCCAAGGAGAC GTCCTTGGCCGGGGC CGGG GCCGAGGCCGAGGGC TTGTGAACGTCGTCG TERM 2352 2179186 - 2179218 + g 100 -16.3 -4.61482 | opp_overlap 2179196, overlap 2179201 ATCGGTTTCGATCTC GGCGATCACATCGCC GGC GGCGATGGTATCGCC TTCTTTTTTCAGCCA TERM 2353 2179201 - 2179221 + g 88 -7.5 -5.03747 | opp_overlap 2179196, overlap 2179186 GGCGATCACATCGCC GGCGGCGAT GGT ATCGCCTTC TTTTTTCAGCCATTT Rru_A1881 2180329 - 2179319 - | pyruvate dehydrogenase (lipoamide) Rru_A1882 2181020 - 2180697 - | septum formation initiator TERM 2354 2180988 - 2181001 + g 72 -5.2 -4.42386 | opp_overlap 2180981 2180988 CAACGAACCGAGGAA GCCG CGCAGA CGGC TTTTATGGATCGAAG TERM 2355 2181749 - 2181738 - g 77 -7.2 -4.56775 | opp_overlap 2181736 2181738 ACGCGGGCCGAAAAA GCCG GGCT CGGC TGTTTCAGCGGCGAA TERM 2356 2182043 - 2182027 - g 70 -6.5 -4.28774 | overlap 2182039 CCACCGAACGCAAAA CCGGC AAGGACA GCCGG ACCCGCTTGCGCACC Rru_A1883 2181360 - 2182355 + | magnesium/cobalt transporter CorA TERM 2357 2182689 - 2182703 + G 81 -7.8 -4.63089 | overlap 2182651 TTTGCGGCGATCTTC GGCGGT TTC ATCGCC TTCTTTTTTGAAGTC TERM 2358 2183052 - 2183066 + G 73 -3.5 -4.61231 | CTGGATTTGCGCCCG GTCGA CATCC TCGGC TTTTTCGCCCTCTGC Rru_A1884 2182500 - 2183540 + | periplasmic sensor Signal transduction histidine kinase TERM 2359 2183543 - 2183573 + T 93 -6.6 -5.26316 | opp_overlap 2183545, overlap 2183544 2183545 CGTCGACGGATAAAA AAGGCCGCCATCCC AAG GGAACGGCGGCCCG TTTTTTGTCCAATCA TERM 2360 2183544 - 2183572 + T 76 -10.1 -3.75067 | opp_overlap 2183545, overlap 2183543 2183545 GTCGACGGATAAAAA AGGCCGCCATCCC AAG GGAACGGCGGCCC GTTTTTTGTCCAATC TERM 2361 2183545 - 2183571 + T 75 -13.6 -2.84317 | opp_overlap 2183545, overlap 2183544 2183543 TCGACGGATAAAAAA GGCCGCCATCCC AAG GGAACGGCGGCC CGTTTTTTGTCCAAT TERM 2362 2183571 - 2183545 - T 100 -18 -5.28176 | opp_overlap 2183544 2183543 2183545 TCGACGGATAAAAAA GGCCGCCATCCC AAG GGAACGGCGGCC CGTTTTTTGTCCAAT Rru_A1885 2184889 - 2183612 - | enolase Rru_A1886 2185749 - 2184907 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 2363 2185070 - 2185047 - G 85 -10.2 -4.25104 | overlap 2185048 GGGTTTCCAGGAAAA CCCCGGCCAC GCCG ACGGCCAGGG CGGCACGGGCGATGA TERM 2364 2185848 - 2185820 - R 73 -14 -2.78384 | gap 1 CGGGGGCGGATCAGA CCAGGCGG-GATT GGGT AATCGCCGCCTGG ACAAAGGATGTGAAC Rru_A1887 2187443 - 2185815 - | CTP synthetase TERM 2365 2187524 - 2187472 - R 80 -3.9 -5.14563 | opp_overlap 2187478 2187479, overlap 2187475 2187477 2187482 CCGCTGACCAAAAAA CAACATCAGACCCAGTCCGTCGACC CTT GGCCGACGGACCTGGACCCCTTTCA TTCCGCCGGACGAAG TERM 2366 2187522 - 2187475 - R 76 -6.2 -4.67552 | gap 1, opp_overlap 2187478 2187479, overlap 2187472 2187477 2187482 CTGACCAAAAAACAA CATCAGACCCAG-TCCGTCGACC CTT GGCCGACGGACCTGGACCCCTTT CATTCCGCCGGACGA TERM 2367 2187520 - 2187477 - R 73 -8.8 -3.93875 | gap 1, opp_overlap 2187478 2187479, overlap 2187475 2187472 2187482 GACCAAAAAACAACA TCAGACCCAG-TCCGTCGACC CTT GGCCGACGGACCTGGACCCCT TTCATTCCGCCGGAC TERM 2368 2187514 - 2187482 - R 89 -17.7 -3.02121 | opp_overlap 2187479 2187478, overlap 2187477 2187475 2187472 AAAAACAACATCAGA CCCAGTCCGTCGACC CTT GGCCGACGGACCTGG ACCCCTTTCATTCCG Rru_A1888 2188018 - 2187578 - | protein translocase subunit secG Rru_A1889 2189013 - 2188255 - | triosephosphate isomerase TERM 2369 2189079 - 2189051 - H 88 -13.7 -3.60805 | overlap 2189052 AGAGGCGACCGGAAA GCGGCCGGGCCCG CGC CGGGGCCGGCCAT CTCCCGGACTTGGGG TERM 2370 2189078 - 2189052 - H 84 -17.2 -2.76162 | overlap 2189051 GAGGCGACCGGAAAG CGGCCGGGCCCG CGC CGGGGCCGGCCA TCTCCCGGACTTGGG TERM 2371 2189180 - 2189154 - H 73 -13.6 -2.79302 | opp_overlap 2189177 ACCATGGGTACCACA GCGCCCGGGCGA ATG CCACCCGGGCGG GCAGAGGCTGCTCAG TERM 2372 2189317 - 2189330 + H 80 -3.7 -5.03314 | overlap 2189284 2189298 CGCGGGCCTTGCCGA GGCCG CTCC CGTCC TTTTTTCAAACTGCA TERM 2373 2190167 - 2190186 + G 75 -11.4 -3.63744 | gap 1, overlap 2190166 CGTTCAGCCGGCCTC GCGCC-GGG TCA CCCAGGCGC TGTTTTCCAGCCGCG TERM 2374 2191156 - 2191144 - g 75 -9.1 -4.16016 | opp_overlap 2191143 CCAGCGTCGAACAAA GCCTG CGT CAGGC CTATTCCGCCGATGT Rru_A1890 2189361 - 2191259 + | hypothetical protein TERM 2375 2191266 - 2191297 + F 100 -22.4 -4.19238 | opp_overlap 2191260 ACGAACTGATCACCG CCCGCGCCAAAGGG GGTG CCTTTTGGCGCGGG TTTTCGCCTTCCAAG TERM 2376 2191718 - 2191757 + G 73 -14.2 -3.12142 | gap 1, overlap 2191717 2191745 AAGCCGCATCGACCT GCCCGCCGGC-TTGCCGCC GAT GGCGGCGATGGTCGCGGGC TATCTTGGCTATGAC Rru_A1891 2191371 - 2192885 + | anthranilate synthase component I TERM 2377 2192929 - 2192891 - T 100 -13.1 -4.41348 | gap 1, overlap 2192892 2192893 CGCCGGCTAAACAAA TCCTCTCCCCGCCCCCTG GCTT CAAGGGGCGGGGGG-GCA GGCTTAGGCGGCCTT TERM 2378 2192927 - 2192892 - T 85 -15.5 -3.24488 | gap 2, overlap 2192891 2192893 GCCGGCTAAACAAAT CCTCTCCCCGCCCCCTG GCTT CAAGGGGCGGGG-G-GG CAGGCTTAGGCGGCC TERM 2379 2192927 - 2192893 - T 78 -15.7 -2.54371 | gap 1, overlap 2192892 2192891 CCGGCTAAACAAATC CTCTCCCCGCCCCCTG GCTT CAAGGGGCGGGGGG-G CAGGCTTAGGCGGCC TERM 2380 2192988 - 2192958 - T 87 -17.6 -3.05384 | opp_overlap 2192963, overlap 2192963 TTGGGGCCCAGGTAA TCGAAGCCGGCGCC ATC GACGGCGGCTTCGA TCGCCGCGTCATCGT Rru_A1892 2193148 - 2192933 - | heavy metal transport/detoxification protein Rru_A1893 2194464 - 2193166 - | hypothetical protein Rru_A1894 2196721 - 2194457 - | heavy metal translocating P-type ATPase TERM 2381 2194692 - 2194719 + g 77 -12.8 -3.64822 | gap 1, opp_overlap 2194684, overlap 2194693 GGCAACAGCCCGGGA TCGCCGCGCATCA GGG TGATGC-CGGCGG TTTCCATCGCCACAT TERM 2382 2196440 - 2196400 - G 73 -14.5 -2.85297 | opp_overlap 2196394 2196393, overlap 2196397 2196395 CCATCGCAAAGATCA GCCGGTCGCCGCGGTCCTC GGC GGGAACGGCGGCGGGCGGC GGGGCGCTTTGGCTG TERM 2383 2196888 - 2196869 - H 71 -5.6 -4.36595 | overlap 2196870 GATCCAAAGGGAAAA TCCGACCC ATGC GGATCGGG ATGGACAAGAAGGCC Rru_A1895 2197137 - 2197727 + | anthranilate synthase, component II Rru_A1896 2197727 - 2198770 + | anthranilate phosphoribosyltransferase TERM 2384 2198967 - 2198952 - g 79 -3.2 -4.98531 | opp_overlap 2198954 2198966, overlap 2198954 CGCCGAAATCAAAAA GGCC TCGCCCTC GGCC GGGTTGATCCGCCCC TERM 2385 2199387 - 2199359 - g 76 -8.9 -4.19506 | gap 1, overlap 2199360 ACCGTAATCTGAAAA CCCTGGTCACCG ATCTGG CGGTGACC-GAG CGTCTGGCCAAGATG Rru_A1897 2198767 - 2199558 + | indole-3-glycerol phosphate synthase TERM 2386 2199593 - 2199568 - f 86 -13.9 -3.55444 | opp_overlap 2199567 GGCTGATCCCGGAAA GGGCGCGGCCC GGGA AGGCCGCCCCC CTCCTCTCCCCCCGT Rru_A1898 2199791 - 2200546 + | LexA repressor TERM 2387 2200572 - 2200598 + T 100 -18 -4.11216 | opp_overlap 2200572 TCTTCGCAAAAAAAA GATCCCCGCCGC TCG GCGCCGGGGATC TTTTGGCGATCAGGC TERM 2388 2200598 - 2200572 - T 100 -18 -5.75342 | opp_overlap 2200572 TCTTCGCAAAAAAAA GATCCCCGCCGC TCG GCGCCGGGGATC TTTTGGCGATCAGGC Rru_A1899 2201576 - 2200608 - | nucleoside recognition TERM 2389 2202199 - 2202143 - g 77 -10.3 -3.91897 | gap 3, overlap 2202144 2202187 2202190 CTGGCGACCTATAAA TCGGAAACGGCGATC---GGGGTCGACG AGCC CGCCGACCCCTAAGATCACGGTTTCCGC GTGAAAGACCGCTCA TERM 2390 2202198 - 2202144 - g 72 -13.8 -2.94924 | gap 3, overlap 2202143 2202187 2202190 TGGCGACCTATAAAT CGGAAACGGCGATC---GGGGTCGACG AGCC CGCCGACCCCTAAGATCACGGTTTCCG CGTGAAAGACCGCTC Rru_A1900 2201714 - 2202184 + | AsnC family transcriptional regulator Rru_A1901 2204298 - 2202238 - | chemotaxis sensory transducer TERM 2391 2202345 - 2202392 + g 100 -19.8 -3.59979 | gap 1, overlap 2202346 CGCCGGCCTTTTCCT GGGCGGTG-GCGGCGACCGAGCG CAC CGCTTGGGCGCTGCTCGCCGCCG TTTGCGCTCCCCCGG TERM 2392 2202346 - 2202391 + g 100 -23.3 -2.75844 | gap 1, overlap 2202345 GCCGGCCTTTTCCTG GGCGGTG-GCGGCGACCGAGCG CAC CGCTTGGGCGCTGCTCGCCGCC GTTTGCGCTCCCCCG TERM 2393 2203464 - 2203474 + g 72 -6.8 -4.18494 | overlap 2203461 CCTTGCGTTGAACCG GGAC CAG GTCC TTTTCGATGGCGCTC TERM 2394 2203696 - 2203684 - G 85 -6.2 -4.8622 | overlap 2203686 GGGGCGAACGAAAAA CGCC TGGGC GGCG GTGCGCGCCGCGACC TERM 2395 2204162 - 2204142 - G 75 -4.5 -4.59773 | overlap 2204144 TCTTAGCGTCAAAAA GCCCCCAGG TTC CCCCGGCGC CAAGCACCATCAAAA TERM 2396 2204436 - 2204416 - R 78 -6.7 -4.62336 | ACCCTATTGGAAAAA GGCAGGGGC GAG ACCCACGCC TAAGAAATGGGCGGG TERM 2397 2204508 - 2204483 - R 100 -16.9 -3.69256 | ACGGACTCAAGACAA TCGGCGGTCCC GTCA GGAACCGCCGA TCCGTATCACTCGAA Rru_A1902 2205673 - 2204594 - | basic membrane lipoprotein Rru_A1903 2206652 - 2205726 - | inner-membrane translocator Rru_A1904 2207748 - 2206654 - | inner-membrane translocator Rru_A1905 2209337 - 2207745 - | ABC transporter component TERM 2398 2208749 - 2208722 - G 70 -10.4 -3.75295 | opp_overlap 2208724, overlap 2208716 2208713 2208723 TATAAAGGATCGAAA CCCCCTCGCCGG CCAG CCGGCGCAGGGT TTCAAACAGGGTATC TERM 2399 2208748 - 2208723 - G 71 -13.9 -2.84454 | opp_overlap 2208724, overlap 2208722 2208716 2208713 ATAAAGGATCGAAAC CCCCTCGCCGG CCAG CCGGCGCAGGG TTTCAAACAGGGTAT TERM 2400 2208724 - 2208748 + g 77 -13.6 -3.53563 | gap 1, opp_overlap 2208723 2208722 2208716 2208713 TAAAGGATCGAAACC CCCT-CGCCGG CCAG CCGGCGCAGGG TTTCAAACAGGGTAT TERM 2401 2209618 - 2209650 + H 85 -12.6 -3.72576 | opp_overlap 2209616 GGGCCGACAGACACC GCCCTCCCCGCCTG GACGG CGGCCGGGGAAGGC TTTGATCGACGCGGG TERM 2402 2210228 - 2210263 + G 72 -5.3 -4.36914 | gap 2, opp_overlap 2210220, overlap 2210225 CCACCAACCCGGCGG CGGCC--GGCCTGGGCG CCCT CACCCTGGCCCTGGTCG TTTTGTGGCCCAAGG TERM 2403 2211011 - 2210993 - g 81 -14.6 -3.53012 | TGGCGCTTGGCCAAA GCGAGCAG GCC CTGCTCGC CCGCGCCGGATCGGC Rru_A1906 2209723 - 2211411 + | Sulfate transporter/antisigma-factor antagonist TERM 2404 2211596 - 2211616 + G 72 -8.9 -4.14243 | CTGGCGCCTTTCTCT GTGCCGCCT GTC AGGCGCCGC TTTTCGCGTCGGATG Rru_A1907 2211415 - 2211888 + | protein-methionine-S-oxide reductase TERM 2405 2211912 - 2211950 + T 82 -12.4 -3.66784 | overlap 2211913 2211915 AAAAGCGGCTCTCTC CCAGGGCGTCGGTCCC CCTTTCA GGGGCTGACGTCCTGA TTGTCTTCAGAGTCA TERM 2406 2211913 - 2211949 + T 79 -15.9 -2.79749 | overlap 2211912 2211915 AAAGCGGCTCTCTCC CAGGGCGTCGGTCCC CCTTTCA GGGGCTGACGTCCTG ATTGTCTTCAGAGTC TERM 2407 2211915 - 2211947 + T 70 -12.7 -2.94293 | overlap 2211913 2211912 AGCGGCTCTCTCCCA GGGCGTCGGTCCC CCTTTCA GGGGCTGACGTCC TGATTGTCTTCAGAG Rru_A1908 2213491 - 2211932 - | response regulator receiver modulated diguanylate cyclase TERM 2408 2212805 - 2212777 - G 70 -2.4 -4.63527 | gap 2, opp_overlap 2212785 2212786, overlap 2212781 CCAGGATCGGAAAAA CCGA-GGCG-TCGA GGA TCGAGCGCAGCCGG GCCTCGCTTTCGCGC TERM 2409 2213257 - 2213237 - G 75 -4.5 -4.64861 | overlap 2213238 CCCGGCGAAAACAAA TCCCGACAG CAC CAGCCGGGT CACCGTGAAGACTTC TERM 2410 2213530 - 2213543 + H 70 -3.7 -4.61527 | opp_overlap 2213524, overlap 2213538 GGGGTTAAAGACCCT GCGCC GCTT GGCCC TTTTTGGGCCATTTT TERM 2411 2213538 - 2213554 + H 84 -9.4 -4.56775 | opp_overlap 2213524, overlap 2213530 AGACCCTGCGCCGCT TGGCCC TTTTT GGGCCA TTTTTGCCGCCCCAT Rru_A1909 2213635 - 2214567 + | hypothetical protein TERM 2412 2214600 - 2214631 + F 72 -13.6 -2.57463 | opp_overlap 2214602, overlap 2214599 AGCGTCGTTTTTCAA AAGCGCCCCCCGTC CCGC GATGGGGGGCGCGG CTTATGAGCACGGTT TERM 2413 2214629 - 2214602 - f 100 -18.4 -4.07568 | opp_overlap 2214600 2214599 CGTCGTTTTTCAAAA GCGCCCCCCGTC CCGC GATGGGGGGCGC GGCTTATGAGCACGG TERM 2414 2215441 - 2215410 - g 77 -12.8 -3.71848 | opp_overlap 2215430 TTGTCGCAGGAACAA GCCGCCCTCGCCCG CGAG CGGGTGCGCGCGGC CGGCCTGCAAGACCG TERM 2415 2215565 - 2215579 + G 75 -11.4 -3.72576 | overlap 2215552 ATTGGCGGACTATTT CCGCCA TGT TGGCGG TTTGCTGAGCGACGA Rru_A1910 2214789 - 2216051 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 2416 2216064 - 2216052 - T 73 -10.5 -3.61398 | GCGGCGGCCGAATAA CGGGG AGG CCCCG GCCCTCGGGCGGCAG Rru_A1911 2216619 - 2216086 - | ferric uptake regulator family protein TERM 2417 2216491 - 2216454 - G 81 -7.5 -4.63218 | gap 1, overlap 2216463 2216464 CCTCGCGCAATAAAA CGTCCAG-AACCCGCCGC CGG GCGGCGGTCAGCCGGGCG CCCAGGTCAAGGCAA TERM 2418 2216481 - 2216463 - G 70 -11.6 -3.36919 | overlap 2216454 2216464 ATAAAACGTCCAGAA CCCGCCGC CGG GCGGCGGT CAGCCGGGCGCCCAG TERM 2419 2216480 - 2216464 - G 71 -15.1 -2.61429 | overlap 2216463 2216454 TAAAACGTCCAGAAC CCGCCGC CGG GCGGCGG TCAGCCGGGCGCCCA Rru_A1912 2216803 - 2217549 + | Short-chain dehydrogenase/reductase SDR Rru_A1913 2218470 - 2217571 - | hypothetical protein TERM 2420 2218685 - 2218673 - H 76 -6.9 -4.56597 | overlap 2218674 GCCCGGCGGGAAAAA CCGGC AAA GCCGA GTGAAGGATGGGCCG Rru_A1914 2218884 - 2219090 + | cold-shock DNA-binding protein family protein TERM 2421 2219169 - 2219184 + F 73 -9 -3.89346 | overlap 2219150 CCGTTCTCTGGCAGA TCGGTC CATT GACCGA TTTGTCCCATGAGAA TERM 2422 2220233 - 2220260 + G 73 -11.2 -3.70902 | gap 1 CGCATCGGCCGCACG GCGCGG-GCCGGC GCC GCGGGCATCGCGC TTTCGCTCTGCGCCC Rru_A1915 2219219 - 2220400 + | DEAD/DEAH box helicase TERM 2423 2220475 - 2220423 - f 73 -14.1 -2.70932 | gap 1, opp_overlap 2220433 GCGCCTTTCCAACTA GGCATCCGAAGCGGGGCGCCCTCC TTGACG GGAGGGCGCCCCGCTTTTT-TGAC GATTCCGTACTTTTC TERM 2424 2220433 - 2220466 + F 100 -27.5 -5.055 | opp_overlap 2220423 AACTAGGCATCCGAA GCGGGGCGCCCTCCT TGAC GGGAGGGCGCCCCGC TTTTTTGACGATTCC Rru_A1916 2220631 - 2221014 + | ferredoxin TERM 2425 2221033 - 2221065 + F 77 -14.9 -2.71924 | gap 1, opp_overlap 2221031 2221030, overlap 2221034 TCGGATGTGAAAGGC CGCTGCGGGCGCCC GCCTTG GGGCGCCCGTA-CG CTTTGGCGGGGCATC TERM 2426 2221034 - 2221066 + F 90 -14.9 -3.53444 | gap 1, opp_overlap 2221031 2221030, overlap 2221033 CGGATGTGAAAGGCC GC-TGCGGGCGCCC GCCTTG GGGCGCCCGTACGC TTTGGCGGGGCATCG TERM 2427 2222163 - 2222153 - g 70 -2.4 -4.66833 | CCTCAACGTGAAAAA CCCG ATC CTGG CCAAGCCCGAAGTGC Rru_A1917 2221272 - 2222828 + | extracellular solute-binding protein TERM 2428 2222839 - 2222863 + F 100 -18.6 -4.87892 | opp_overlap 2222829 2222832 2222831 AGTAAGACCCGAAGC CTCCGGCCGG CATCC CCGGCCGGAG TTTCTTTTGTTCAGG Rru_A1918 2222931 - 2223932 + | binding-protein dependent transport system inner membrane protein TERM 2429 2224085 - 2224096 + G 79 -2.2 -5.05601 | CCCTTGGCGGTCATC GGTC TGGC GATC TTTTTATGTCTGGTG Rru_A1919 2223932 - 2224864 + | binding-protein dependent transport system inner membrane protein Rru_A1920 2224868 - 2225698 + | ABC transporter component Rru_A1921 2225698 - 2226486 + | ABC transporter component Rru_A1922 2227208 - 2226552 - | DSBA oxidoreductase TERM 2430 2226675 - 2226708 + g 77 -13.9 -3.35679 | gap 1, opp_overlap 2226665 2226669, overlap 2226677 2226677 GAAGATGAAGCCGGG AACCC-CGCTCATGCC GAT GGCATGGGCGCGGGTG TTCTCGCTGACCACC TERM 2431 2226677 - 2226706 + g 82 -16.5 -3.24924 | gap 1, opp_overlap 2226665 2226669, overlap 2226675 2226677 AGATGAAGCCGGGAA CCC-CGCTCATGCC GAT GGCATGGGCGCGGG TGTTCTCGCTGACCA TERM 2432 2226677 - 2226705 + g 77 -16.7 -2.5474 | opp_overlap 2226665 2226669, overlap 2226677 2226675 AGATGAAGCCGGGAA CCCCGCTCATGCC GAT GGCATGGGCGCGG GTGTTCTCGCTGACC TERM 2433 2226878 - 2226864 - G 72 -11.4 -3.55815 | overlap 2226854 2226852 AAACAGCGCGTCAAA CAGCGC CTC GCGCTG GCTGGTCGAACGCCC TERM 2434 2227113 - 2227092 - G 86 -8.6 -4.72272 | overlap 2227094 CGGGTTGAGCAAAAA GGGCCGCC AGCGCG GGCGGACC ACGACCTCGGGCCGC TERM 2435 2227336 - 2227360 + H 80 -10 -4.13767 | gap 2 GGGTATGGTGCGGCC GGGCAGGAGGCC TGG GGCC-CC-GCCC TTTTGCCATCGGCCA TERM 2436 2227540 - 2227550 + G 72 -4.6 -4.53036 | CGCGGAAATCGGTGA TGCC GGT GGCG TTTTGGTATTTCTCC Rru_A1923 2227407 - 2227715 + | Lipid A biosynthesis-like TERM 2437 2228057 - 2228114 + G 78 -14.8 -3.29144 | gap 3, overlap 2228061 2228061 2228111 CTCTTCGTCTGGCTG GGCACCCGCGCCGCC-GC-CGGGGGCGAC CGC GTCGCCGCCGGGCTGGCCGTGCTGG-GTC TTCTGGCCAGCGTCA TERM 2438 2228061 - 2228112 + G 84 -17.3 -3.21395 | gap 3, overlap 2228061 2228057 2228111 TCGTCTGGCTGGGCA CCC-GCGCCGCC-GC-CGGGGGCGAC CGC GTCGCCGCCGGGCTGGCCGTGCTGGG TCTTCTGGCCAGCGT TERM 2439 2228061 - 2228111 + G 79 -17.5 -2.52623 | gap 2, overlap 2228057 2228061 TCGTCTGGCTGGGCA CCCGCGCCGCC-GC-CGGGGGCGAC CGC GTCGCCGCCGGGCTGGCCGTGCTGG GTCTTCTGGCCAGCG Rru_A1924 2227721 - 2229307 + | glycosyltransferase Rru_A1925 2230770 - 2229304 - | GntR family transcriptional regulator TERM 2440 2231056 - 2231066 + G 77 -5.4 -4.60797 | GACCTGCTATGGCCG CATC GAT GATG TTTTGTATATCCACG TERM 2441 2231113 - 2231132 + G 75 -9.2 -4.0492 | overlap 2231114 GCTGATGGCCGGCGG ACGCCAGG GCGG CCTGGCGG TTTGTCTAACCGTTA Rru_A1926 2230898 - 2231557 + | hypothetical protein TERM 2442 2231599 - 2231561 - T 95 -18.8 -3.28712 | opp_overlap 2231592 CCCGCCCCCTGATAA TTCCGGCGGGGCCCCCCA TGC CGGAAGGCCCCGCCGACA AGGCGTTTGTCAGTC Rru_A1927 2233114 - 2231609 - | Acetyl-CoA hydrolase TERM 2443 2232429 - 2232454 + g 93 -10.3 -4.68908 | overlap 2232430 CGGGTATCGGCATCG GGCGGCGCCAC GGTG GCGGCGCTGTC TTTCTTTTCGGTGAC TERM 2444 2232430 - 2232450 + g 74 -12.5 -3.54954 | overlap 2232429 GGGTATCGGCATCGG GCGGCGCCA CGG TGGCGGCGC TGTCTTTCTTTTCGG Rru_A1928 2233751 - 2235427 + | 2-isopropylmalate synthase TERM 2445 2235555 - 2235502 - T 74 -12.6 -3.17051 | gap 3, opp_overlap 2235509, overlap 2235500 2235503 GCCTGACGATCAAGA TCTGA-G-AGCGGCGGACCCACCTTCC ACG GGAAG-CGGGTCCGCCGGTTCGTCAGC AGCCGCCGGCGCGGC TERM 2446 2235554 - 2235503 - T 78 -16.1 -2.50016 | gap 3, opp_overlap 2235509, overlap 2235500 2235502 CCTGACGATCAAGAT CTGA-G-AGCGGCGGACCCACCTTCC ACG GGAAG-CGGGTCCGCCGGTTCGTCAG CAGCCGCCGGCGCGG TERM 2447 2235509 - 2235546 + T 85 -16.3 -3.14132 | gap 1, opp_overlap 2235500 2235503 2235502 GATCAAGATCTGAGA GCGGCGGACCCACCTTCC ACG GGAAGC-GGGTCCGCCGG TTCGTCAGCAGCCGC Rru_A1929 2236279 - 2235551 - | phosphoadenosine phosphosulfate reductase TERM 2448 2235720 - 2235698 - G 70 -9.8 -3.6682 | GCCGACCGAGGGAAA GCCATCCTCC CAC AGCGGATGGC GCGGCAGGTCGTGGG TERM 2449 2235820 - 2235801 - G 83 -3.4 -5.14965 | overlap 2235805 ATTTTCACCAAAAAA CCATCGGC CTCG GCCACCGG CATCTGCGCCCGCCC Rru_A1930 2236812 - 2236276 - | hypothetical protein Rru_A1931 2238463 - 2236793 - | ferredoxin--nitrite reductase Rru_A1932 2238798 - 2238466 - | hypothetical protein Rru_A1933 2240330 - 2238831 - | uroporphyrinogen-III C-methyltransferase TERM 2450 2238920 - 2238905 - G 86 -6 -5.00616 | overlap 2238906 2238907 GCGGGGTGGAAAAAA CCGGGG CGAT CGCCGG CAGGCGGCCGGCCTT TERM 2451 2239865 - 2239842 - G 78 -13.8 -3.53224 | GACCGTGCCGCGAAA GCCCTCGGCC AGCC GGGCGAGGGC TCCCAGCCGGGCGGG TERM 2452 2240803 - 2240822 + H 80 -3.7 -5.04987 | opp_overlap 2240790 AACACAAAGAATATG TGTTAAA ATTTAA TTTAACA TTTTTTAAAAGTATT Rru_A1934 2240956 - 2241564 + | TetR family transcriptional regulator Rru_A1935 2242416 - 2241652 - | LuxR family transcriptional regulator Rru_A1936 2244469 - 2242670 - | ErfK/YbiS/YcfS/YnhG TERM 2453 2244002 - 2243969 - G 79 -2.2 -5.0925 | overlap 2243970 2243971 GGCGAAAAGCAAAAA TGCCCGGCCCATCA GCAGAT CGGCGGTCTGGGCA TCGGCGGGGGTGGTG Rru_A1937 2245953 - 2244769 - | hypothetical protein TERM 2454 2245110 - 2245071 - G 77 -16.4 -2.75481 | gap 1, overlap 2245052 2245105 CGCGAATGTGAACGA CGGCGGCGC-TGACCCCGG CGC CCGGGGTCAGGAACAGCCG TTCACCGGGCGGCGC TERM 2455 2246213 - 2246199 - g 75 -7 -4.38712 | CGGAGGCGGAGAAAA CCGGCG AGG CGCGGG GCGGCATCTTCCGCC Rru_A1938 2246030 - 2246893 + | hypothetical protein Rru_A1939 2246881 - 2247480 + | ribosomal large subunit pseudouridine synthase E Rru_A1940 2248391 - 2247477 - | hydroxymethylglutaryl-CoA lyase TERM 2456 2248045 - 2248059 + g 79 -2.1 -5.0133 | AGGCTTTCCGCGATC GAGCA GTTGA TGTTC TTTTTTGAAAAGGTC Rru_A1941 2250448 - 2248388 - | 3-methylcrotonoyl-CoA carboxylase, alpha subunit TERM 2457 2250151 - 2250185 + g 71 -12.1 -3.28712 | gap 1, opp_overlap 2250147 2250146 GACCGATGAAGGTCA CGCCGGCTTCG-GCGC AGGC GCGGGCGAAGGCGGCG TTCTCGGACAGGAAG Rru_A1942 2251257 - 2250430 - | methylglutaconyl-CoA hydratase Rru_A1943 2252878 - 2251271 - | propionyl-CoA carboxylase TERM 2458 2252496 - 2252507 + g 73 -3.6 -4.59773 | overlap 2252491 2252489 CCGGCGATCTCCTGG GCGC GCAG GTGC TTTTTGACGGTCAGC Rru_A1944 2253592 - 2252990 - | DSBA oxidoreductase TERM 2459 2253342 - 2253311 - G 75 -14.4 -3.32647 | gap 1, opp_overlap 2253311 2253310 GCTCAACCACAGGAA TCCCCGCGCCG-CCG CGG CGGTCGGCACCGGGA ATTTCGCCGGTAGAT TERM 2460 2253440 - 2253450 + g 70 -8.2 -3.90112 | CTGGTTGATCAGGGG GCGG TTG CCGC TTTCCTTGAACAGCG TERM 2461 2253513 - 2253478 - G 71 -9.6 -3.78934 | gap 1, overlap 2253479 GCGGCCCGAGAAGAA TCGCCCGCCAGCGGACA TCG CGGCCG-TAGCGGGCGG CCAGATCGCCGATCC Rru_A1945 2254432 - 2253749 - | Short-chain dehydrogenase/reductase SDR Rru_A1946 2255741 - 2254521 - | Acetyl-CoA C-acetyltransferase TERM 2462 2255681 - 2255655 - G 73 -13.7 -3.16881 | opp_overlap 2255655 2255657 CAGCGATCCCATGAA GGCGCCAAGCG GCGTG CGTTTGGCGCC GACAATCACCACCGG TERM 2463 2255779 - 2255765 - R 85 -7 -4.82901 | CTTGCGTCAGAAAAA CGCGGC TCA GCGGCG GGCGGGCGCTGCGAA Rru_A1947 2256607 - 2255771 - | nucleotidyltransferase-like TERM 2464 2255996 - 2256020 + g 70 -10.6 -3.61715 | opp_overlap 2255954 GCCGGCGCGCAACCG CGCCCAGTCG GGGGG CGGCGGGGCG TTCTTGCCCAGGATC Rru_A1948 2257811 - 2256648 - | isovaleryl-CoA dehydrogenase TERM 2465 2256853 - 2256839 - G 71 -2.7 -4.63218 | opp_overlap 2256840, overlap 2256840 CGGCGGCGAACAAAA TCGCC CCGGC GGCGT CCTTGCTGGTAGCCT Rru_A1949 2258135 - 2259520 + | hypothetical protein TERM 2466 2259649 - 2259664 + G 79 -11.8 -3.83026 | TCGATCTCGGCCGCC GCCCGG CGCA CCGGGC TTTCCTATCGCAAGG Rru_A1950 2259517 - 2259930 + | ModE family transcriptional regulator Rru_A1951 2260886 - 2260062 - | AraC family transcriptional regulator TERM 2467 2262908 - 2262935 + G 73 -11.2 -3.72893 | opp_overlap 2262907 2262906 CTTCAGCGCCAAAGC CCCGAGGGGACC GGTC GATCCCCTCGAG TTTGATCGGCGCATC Rru_A1952 2260962 - 2263076 + | fusaric acid resistance protein region Rru_A1953 2263073 - 2263282 + | hypothetical protein TERM 2468 2263850 - 2263811 - g 71 -15 -2.66316 | gap 1, opp_overlap 2263811 2263810, overlap 2263808 2263813 CCGGCGACTACACGA CAGCCGGCGT-GACGACGG TCG CCGTCCTCGACGCCGCCCG ATTCTGGATCACCGG TERM 2469 2263848 - 2263813 - g 71 -14 -2.87468 | gap 1, opp_overlap 2263811 2263810, overlap 2263808 2263811 GGCGACTACACGACA GCCGGCGT-GACGACGG TCG CCGTCCTCGACGCCGCC CGATTCTGGATCACC TERM 2470 2263918 - 2263895 - g 84 -13.8 -3.92602 | opp_overlap 2263882 CCAAGATCGGACAAA TCCGCGTCGG CAGT CCGGCGCGGA TCAGGCTGATGGGCT TERM 2471 2264170 - 2264141 - g 71 -14.9 -2.65264 | CGACCATCGAGATCA TCCCGGCGGCCGG CGAG CCGGCCGTGGGGA ACCGGCGCTGAAAAA Rru_A1954 2263279 - 2264181 + | secretion protein HlyD Rru_A1955 2264373 - 2264927 + | phosphoribosyltransferase TERM 2472 2265196 - 2265218 + G 73 -12.6 -3.44051 | CCAGGGATTGCGCCG GGCCCGGGCC GAT GGCCTGCGCC TTATCCTGGTCAGCG Rru_A1956 2264924 - 2265610 + | haloacid dehalogenase-like hydrolase Rru_A1957 2265645 - 2266370 + | ExsB Rru_A1958 2266376 - 2267533 + | GMP reductase Rru_A1959 2267536 - 2268243 + | radical SAM family protein Rru_A1960 2268983 - 2268315 - | O-methyltransferase family protein Rru_A1961 2269075 - 2269716 + | TetR family transcriptional regulator TERM 2473 2269742 - 2269711 - f 78 -10.8 -3.86194 | opp_overlap 2269700, overlap 2269737 AACGGTCGCGACAAA GGCTGATCTGTCCC ACAG GGAACAGAGCGGCC CCTTCGCGCCTCTAT Rru_A1962 2269776 - 2270072 + | hypothetical protein Rru_A1963 2271386 - 2270085 - | adenylosuccinate lyase TERM 2474 2270747 - 2270729 - G 79 -7.3 -4.64676 | opp_overlap 2270741 GGACGGCGAAGAAAA CCGCGTG GCGAT CGCGCGG CACCACCTGGGTGGC TERM 2475 2271260 - 2271304 + g 75 -12 -3.70902 | gap 1 CGGCCAGGGCGGCCT CGGCCG-GCACCACGCCCAGG GCCG CCTGGGCGTCCAGCACGGCGG TTTCGATCTCCAGCC Rru_A1964 2272396 - 2271383 - | adenylosuccinate synthetase Rru_A1965 2272567 - 2272806 + | hypothetical protein TERM 2476 2273122 - 2273151 + G 81 -7.7 -4.66609 | gap 1, overlap 2273123 CCGGCCTATCACCAC TGGCGC-CCGCAGG GGA CCGGGGGCGCGCCG TTTTTGGATGGCCTG Rru_A1966 2272897 - 2274360 + | coenzyme F390 synthetase-like TERM 2477 2274396 - 2274417 + F 73 -4.3 -4.58283 | overlap 2274414 CCGCCCTCGGGAGAC GCTGCGATG GCCC CATCCCTGC TTTTTGAAGCCGTTC TERM 2478 2275594 - 2275635 + G 75 -14.3 -3.28712 | gap 1, overlap 2275586 2275589 TCCTCGCCCTGCTGC GCGCCCGCGCTCCCGGCTTG TCC CAGGAACGG-GCGCGGGCGC TTCTGGCCAAAACGG Rru_A1967 2274402 - 2275793 + | peptidase S8 and S53, subtilisin, kexin, sedolisin Rru_A1968 2275853 - 2276281 + | transcription regulator TERM 2479 2276915 - 2276881 - g 73 -12.8 -3.47227 | overlap 2276855 GTTCAATGACGAGAA CCAGCATCGCGGCC AGGGCGA GGCCGCCCTGCTGG CCGAGCTGACCCGGG Rru_A1969 2276369 - 2277490 + | esterase, PHB depolymerase Rru_A1970 2279214 - 2277487 - | PTS fructose IIC component TERM 2480 2278123 - 2278081 - G 71 -12.6 -3.24456 | overlap 2278042 2278039 2278041 ATAGATCATCAGCAA GCCGGTCACGACGGTGCCCA GCA CGGGCAGGATCAGGACCGGC TTCAACCCTTCAAGA Rru_A1971 2280241 - 2279258 - | PfkB Rru_A1972 2282748 - 2280241 - | phosphoenolpyruvate--protein phosphotransferase TERM 2481 2282839 - 2282826 - H 76 -9.5 -4.07568 | opp_overlap 2282826 TTGGCTTCCGCAAAA CCGGC GAAA GCCGG TTTCATTCCCTGGCC TERM 2482 2282826 - 2282839 + H 73 -9.5 -3.93288 | opp_overlap 2282826 TTGGCTTCCGCAAAA CCGGC GAAA GCCGG TTTCATTCCCTGGCC TERM 2483 2283908 - 2283865 - g 72 -13.9 -3.0792 | gap 1, overlap 2283855 2283853 GAACAGCCGATCGAA GCCAT-CGGCCGCGCCGC CATGTCCCT GCTGCGCGACCGCATGGC CGATCCCACCCTGCC Rru_A1973 2282977 - 2284002 + | LacI family transcription regulator Rru_A1974 2285459 - 2284227 - | hypothetical protein TERM 2484 2284416 - 2284398 - G 70 -2.2 -4.62471 | overlap 2284399 GGGAATCTCGAAAAA CGCGCAGG CTT CCAGTGCA AGGTTGATCGACCGA Rru_A1975 2285836 - 2285459 - | XRE family transcriptional regulator TERM 2485 2285772 - 2285748 - G 70 -13.5 -3.05844 | opp_overlap 2285748 GCGCGCACGGCAAGA TCCGCCACGGC GAT GCCGCGCCGGA GACGCGCGTTGCGGA TERM 2486 2285986 - 2285970 - R 72 -11.5 -3.29263 | overlap 2285980 ATATCTGGGGCAGAA GGAGGGC AAA GCCCCCC TGTGGCTGAGCCACA Rru_A1976 2287344 - 2286031 - | phenylacetate-CoA ligase TERM 2487 2286819 - 2286829 + g 72 -6.8 -4.28254 | CGAAATCCTTGAGCA GCAG GAT CTGC TTTTCCGTATTGCCC TERM 2488 2286971 - 2286944 - G 78 -15.6 -3.10344 | gap 1 GCGTTATGCAAGATA TCGCCCG-GCCGG CCA CCGGCGCAGGCGA TGCAGCGCGCCATCA TERM 2489 2287437 - 2287397 - R 74 -5.4 -4.56597 | CGCCGCCCGCAAAAA GCTCACTCGGCCGC-CGC ATCCTCG GCGCGCGCCCGA-TGGGC GGCCGCCCGTCCGGC Rru_A1977 2288016 - 2287399 - | indolepyruvate oxidoreductase subunit B Rru_A1978 2289882 - 2288020 - | indolepyruvate ferredoxin oxidoreductase TERM 2490 2290153 - 2290116 - R 100 -22.8 -5.52384 | gap 1, opp_overlap 2290112 2290111 GTCTTATGAAAAAAA GCCCCCCGGGAGCCGCC GATCA AG-GGCTCCCGGGGGGC GAGGCTTTCACGCCG Rru_A1979 2291543 - 2290185 - | tryptophan synthase subunit beta TERM 2491 2292651 - 2292637 - g 77 -12.8 -3.72576 | CGCCGTTGGATGAAA CGGCGC GCT GCGCCG CCATCGTCCGCACCC Rru_A1980 2291703 - 2292707 + | hypothetical protein Rru_A1981 2293830 - 2292697 - | succinylglutamate desuccinylase/aspartoacylase Rru_A1982 2294389 - 2293889 - | SEC-C domain-containing protein TERM 2492 2294442 - 2294414 - R 74 -5.9 -4.56597 | gap 1, opp_overlap 2294416, overlap 2294415 CCTCTCTTGGAAAAA CCGTCGCGAGCG GACAGG CGC-CGCGCCGA AGCCGGCTTGGGCGC Rru_A1983 2294701 - 2294495 - | hypothetical protein TERM 2493 2295109 - 2295130 + G 79 -11.5 -3.83205 | ACCTGGATGTCGTGG TGACCGCCG GGGC CGGCGGACA TTTCGTCTCGCGCAT Rru_A1984 2294913 - 2295272 + | nitrogen fixation-related protein Rru_A1985 2295269 - 2295700 + | hypothetical protein Rru_A1986 2296550 - 2295831 - | hypothetical protein TERM 2494 2296589 - 2296608 + r 83 -4.2 -5.03314 | gap 1, overlap 2296592 2296600 2296601 TCGCCTCTGCCATTG GCATGCGCC CGG GGCTCA-GC TTTTTTAGGGCTGAG TERM 2495 2296758 - 2296747 - R 71 -5.8 -4.3739 | CACCGCCCCACAAAA GCGT CTTG ACGC CCCACGTCACGCAAG Rru_A1987 2297928 - 2296765 - | peptidase M42 TERM 2496 2297593 - 2297571 - G 75 -9 -4.11216 | CCTTCAGCGGCAAAA TCGTGCCGCG AAC CGCGCCGCGA TCGGTGAACACCGTG Rru_A1988 2299700 - 2298012 - | GCN5-related N-acetyltransferase Rru_A1989 2301481 - 2299706 - | asparagine synthase, glutamine-hydrolyzing TERM 2497 2299852 - 2299829 - G 72 -11.6 -3.53563 | ATAGTCCTCGCGAAA CAGGCCGCGC TGGC GCGCCGCCCG GCTTGACAGGCCATC TERM 2498 2301220 - 2301200 - G 75 -3.1 -4.83169 | overlap 2301201 2301202 ACCGCCCGAGAAAAA CCGGTAGCC AAG GGCCTCCAA CTCGGAGCGCAGCGC TERM 2499 2301629 - 2301641 + r 84 -3.3 -5.25803 | ACGCCCATAATCCAC CAAGG TTC CCCTG TTTTTTATGGAAATT Rru_A1990 2302085 - 2301681 - | hypothetical protein Rru_A1991 2302939 - 2302097 - | hypothetical protein Rru_A1992 2303435 - 2303016 - | arsenate reductase Rru_A1993 2303897 - 2303460 - | hypothetical protein TERM 2500 2303765 - 2303722 - G 82 -17.4 -3.01712 | TGGCGGGCGGGAAGA CCGATCTCGGCGGCGACCGC CAGC ACGGTGGCCAGCGAGACCGG ATCGCCGGTGAAGCC Rru_A1994 2304319 - 2303912 - | MerR family transcriptional regulator Rru_A1995 2305834 - 2304404 - | divalent cation transporter TERM 2501 2304462 - 2304450 - G 85 -5.5 -5.10029 | overlap 2304451 AGGAAGGCGAAAAAA CCGAC CAC ATCGG TGATCGTCGTCAGGA TERM 2502 2305868 - 2305918 + H 100 -15.7 -4.25056 | gap 4, overlap 2305877 TACATCGCGATCCCG GACGTGAC--AGGGGCCCG-CCGGC ATTGC GCCGGACGGGCCCCTTGGTCA-GTC TTTATTGGTGCGGTC TERM 2503 2305877 - 2305908 + H 95 -20.9 -3.2404 | gap 1, overlap 2305868 ATCCCGGACGTGACA GGGGCCCG-CCGGC ATTGC GCCGGACGGGCCCC TTGGTCAGTCTTTAT TERM 2504 2306044 - 2306074 + H 70 -3.8 -4.70879 | opp_overlap 2306036, overlap 2306048 GTAGAAAGGGACATC CCCTTGAGGTCGGG AGC CCTGGTCTCGCTGG TTTTTGGCGTTTCGC lipB 2306189 - 2306839 + | lipoyltransferase Rru_A1997 2306872 - 2307765 + | carboxylesterase family protein TERM 2505 2308143 - 2308162 + G 71 -12.2 -3.28912 | overlap 2308147 TGGCAACACCTCGCT GCAAGACG ACAC CGTCTTGC TTGATATCGATCTGC TERM 2506 2308697 - 2308711 + G 71 -3.4 -4.62471 | overlap 2308698 TGTTCCGCCTGCTTG GCGCCG ATG CGGTGA TTTTTCCCAATTCGG Rru_A1998 2307874 - 2308998 + | ribulose 1,5-bisphosphate carboxylase large subunit TERM 2507 2309081 - 2309066 - T 78 -4.7 -4.85599 | opp_overlap 2309071 TCCACGCTAGAAAAA GGTCA GCGTTT TGACC TCAACTCGCTTTCCA Rru_A1999 2309382 - 2309068 - | hypothetical protein Rru_A2000 2309933 - 2310403 + | hypothetical protein TERM 2508 2310441 - 2310404 - T 86 -14.8 -3.28712 | gap 1, overlap 2310425 GGGCTGGCGGGATAA GGGGCTCCGGCCGG-GA GACGA TCGCCGGCCGGGGCGCC CGGAGGGTTAGAGCG Rru_A2001 2311606 - 2310554 - | hypothetical protein TERM 2509 2311337 - 2311322 - G 73 -9 -3.90922 | ATTGGTCGGAAAGAA CGGCAA GGCG TTGCCG ACTTCCTGGGCCCAG TERM 2510 2312772 - 2312800 + G 74 -14.6 -3.01924 | gap 1, opp_overlap 2312771 2312769 2312772 AGCGCGGCGAAACAC CCCCCGGTC-TGG TCGC CCGTGACCGGGGG TATTAAAAAACGCTC Rru_A2002 2311883 - 2312806 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 2511 2312844 - 2312811 - T 100 -9.6 -5.14563 | gap 2 GGGGGTATTAAAAAA CGCTCCCTCAGCGCCC GGTC GAGCGCCG-GGGA-CG GCCCCGGCCGGGCTT Rru_A2003 2314941 - 2312818 - | radical SAM family protein Rru_A2004 2316015 - 2315101 - | LysR family transcriptional regulator Rru_A2005 2316143 - 2317330 + | glutaryl-CoA dehydrogenase TERM 2512 2318025 - 2318067 + G 77 -16.3 -2.80443 | gap 1 CGGCCAACGCCCTGG TTGGCGAGCG-CGTGCCCGG CCGC CTGGGCACGGCGCACCCCAA TATCGTGCCCTATCA Rru_A2006 2317343 - 2318566 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 2513 2318643 - 2318671 + T 100 -8.8 -5.12617 | overlap 2318639 2318644 ATGTCACCATCGGCG CCCCCCCTGTTC AAGAC GGATAGGGGGGC TTTTTTGGGTCATTC TERM 2514 2318644 - 2318670 + T 82 -12.3 -3.66486 | overlap 2318639 2318643 TGTCACCATCGGCGC CCCCCCTGTTC AAGAC GGATAGGGGGG CTTTTTTGGGTCATT Rru_A2007 2319718 - 2318681 - | hypothetical protein TERM 2515 2318953 - 2318936 - G 71 -12.7 -3.34962 | CCGGATATTGCAGAA CTGGCCC AGCA GGGCCAG CGGCCCGAAGGCGAT TERM 2516 2319346 - 2319321 - G 87 -19.1 -2.78463 | overlap 2319305 ACGCCGTCCAGCAGA CCGATGGCCGA GGCC TCGGCCATCGG CAGCAAGGTCACCCC TERM 2517 2320918 - 2320896 - g 83 -12.6 -4.08216 | opp_overlap 2320896 2320914 TCAGGCTTTGGAAAA GGTGGGCGGC GAC GCCACCCGCC TTGACTGGGCGGTGT Rru_A2008 2320063 - 2321928 + | thiamine biosynthesis protein ThiC TERM 2518 2322031 - 2321996 - f 89 -12.4 -4.07568 | overlap 2321997 GCGTTCTTTTGAAAA TGGGGGAGGCGGCGGA TCAT CCCGCCGCTTCCCCGC CCCGGATCAGGACCG TERM 2519 2322030 - 2321997 - f 83 -15.9 -3.04398 | overlap 2321996 CGTTCTTTTGAAAAT GGGGGAGGCGGCGGA TCAT CCCGCCGCTTCCCCG CCCCGGATCAGGACC TERM 2520 2323376 - 2323356 - g 70 -10.3 -3.64703 | opp_overlap 2323371, overlap 2323359 CGCGGGTGATCGAAA CCACGGCGC TGG GCGCCGCCG CCCTGGCCGGCCTGG Rru_A2009 2322053 - 2323540 + | glycerol kinase TERM 2521 2323567 - 2323579 + T 70 -10.5 -3.53012 | opp_overlap 2323553 ATGCCGTCGATCACG GCGCG AAC CGCGC TTTCGCCCGCCGGCC Rru_A2010 2324714 - 2323548 - | aminotransferase, class V TERM 2522 2324255 - 2324229 - G 79 -13.6 -3.75292 | ATCGACGATCAACAA GGCGCCGTGGGC GGC GACCACCGCGCC GATGTCGGCCAGCGG Rru_A2011 2326404 - 2324722 - | ABC transporter component Rru_A2012 2327231 - 2326401 - | binding-protein dependent transport system inner membrane protein Rru_A2013 2328216 - 2327236 - | binding-protein dependent transport system inner membrane protein TERM 2523 2328164 - 2328144 - G 86 -6.1 -4.98436 | overlap 2328145 GCAACAGCAGAAAAA CGCCGACCA GAA TGATCAGCA AACTGGGGATGCTTG Rru_A2014 2329886 - 2328282 - | twin-arginine translocation pathway signal TERM 2524 2329800 - 2329775 - G 72 -14 -3.01924 | gap 1 GATGGGCGGTCAACA CGCCGCCGGCG ACCGG CGCCGG-GGCG CCCTGCGCCCAGGAG TERM 2525 2330089 - 2330068 - H 88 -7.1 -4.87318 | overlap 2330070 TTCAAAATGCAAAAA CGTCGGGGG CGTT CCCCCGGGG ACGCCGCCTTGACAG TERM 2526 2330436 - 2330471 + G 71 -14.6 -2.63073 | gap 1, overlap 2330435 2330437 CGAGCGGCCCTCCTC CGCGCCAGGGGGGCCGG GTT CCGGCGCCTC-GTCGCG CTATTATTACCGCGA TERM 2527 2330437 - 2330472 + G 75 -13.2 -3.38991 | gap 1, overlap 2330436 2330435 GAGCGGCCCTCCTCC GCGCCA-GGGGGGCCGG GTT CCGGCGCCTCGTCGCGC TATTATTACCGCGAT Rru_A2015 2330185 - 2331186 + | chaperone DnaJ Rru_A2016 2331183 - 2331521 + | hypothetical protein TERM 2528 2331716 - 2331689 - T 76 -14.1 -3.06087 | opp_overlap 2331690 AATACAGTGTGAAGA GCCTCGCCCGG TTTACG CCGGGCGAGGT TTACTATTTGGGCCA TERM 2529 2331690 - 2331715 + T 100 -18.3 -4.00532 | opp_overlap 2331689 ATACAGTGTGAAGAG CCTCGCCCGGT TTAC GCCGGGCGAGG TTTACTATTTGGGCC Rru_A2017 2332040 - 2331798 - | hypothetical protein Rru_A2018 2332122 - 2332511 + | hypothetical protein Rru_A2019 2332999 - 2332700 - | plasmid maintenance system antidote protein Rru_A2020 2333294 - 2333013 - | plasmid maintenance system killer TERM 2530 2333216 - 2333271 + g 75 -13.3 -3.48395 | gap 1 GCTGGGCGATGCGTT GGATATCGTGGGGCAGCTT-ACGGGC AAAAC GCCCGTGAAAAAGCCCCTCGGTATCC TTGTCTGCGAACGAT TERM 2531 2333734 - 2333711 - R 90 -6 -5.27335 | gap 1, opp_overlap 2333711, overlap 2333712 GGGGTCAAAGAAAAA GGGGTC-AGAC CCG GTTTAGACCCC TTTTCATTCGGTCCA TERM 2532 2333711 - 2333734 + r 79 -8.2 -4.43477 | gap 1, opp_overlap 2333711 2333712 GGGGTCAAAGAAAAA GGGGTC-AGAC CCG GTTTAGACCCC TTTTCATTCGGTCCA Rru_A2021 2334478 - 2333738 - | endonuclease/exonuclease/phosphatase TERM 2533 2334824 - 2334788 - g 71 -9.3 -3.77196 | overlap 2334790 CTATCAGGGACCAAA GACCTTGACGGTCGAGG TGG CGCCGACGGCCAAGGGC GATCACGTGCTGATC Rru_A2022 2334684 - 2334896 + | hypothetical protein TERM 2534 2335211 - 2335182 - f 71 -7.1 -4.16016 | gap 1, opp_overlap 2335174 GCATTTTGCAAGAAA GCTTGCTTTCGGCG AGG CGCCGAAAGGG-GC GCGCTGAGTACCGCT TERM 2535 2336010 - 2336029 + G 75 -9.2 -4.08216 | overlap 2336011 CGCCACCATGTCGGT TCCCGTCG TCGT CGGCGGGG TTTTCCAAGGCGTCG TERM 2536 2336098 - 2336148 + G 78 -15.7 -3.21099 | opp_overlap 2336121 GCGGTCAGCGTCTCG GCC-TCGCTCTTTGACGATCATAAC GAT GTGATGATCGTCAATG-GCGACGGC TTGGTCGTCGCCCAC TERM 2537 2337320 - 2337298 - g 77 -6.9 -4.56597 | gap 1, overlap 2337299 CGCGGCCTGGAAAAA GCCGCCGCCG ATAT CGGC-GCGGT GATCGCCCTGATCAC TERM 2538 2337764 - 2337736 - g 75 -11.6 -3.74872 | overlap 2337722 ACCCAGGGCATCAAA GCCGCCGCCGAC GACCT GTCGGCCTCGGC CCGCCAGTTGGAAAA Rru_A2023 2335348 - 2337819 + | methyl-accepting chemotaxis sensory transducer Rru_A2024 2338974 - 2337841 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2539 2338452 - 2338464 + g 84 -9.1 -4.46212 | AGGGAAACAGCAGGC GGCCA AGC TGGCC TTTTGTCGTGGCGAA Rru_A2025 2339728 - 2339030 - | TenA family transcription regulator Rru_A2026 2340069 - 2339740 - | ferredoxin Rru_A2027 2341256 - 2340150 - | aminotransferase, class V Rru_A2028 2341717 - 2341253 - | BadM/Rrf2 family transcriptional regulator Rru_A2029 2342560 - 2341796 - | Serine O-acetyltransferase TERM 2540 2341851 - 2341887 + g 75 -15.7 -2.78384 | ACCAGGGCCGGGCCC CGGCGTTCGGCGGGGGG GTC CCCCACCCCGGACCCCG TCTCGTCAAGCCGGC TERM 2541 2343045 - 2343057 + G 79 -6.9 -4.68593 | overlap 2343046 CGCTCTATCACACCT TCGCG CGA CGCGG TTTTTCCGTGATGCG TERM 2542 2343192 - 2343205 + G 73 -5.9 -4.4078 | CAAGCGCCTCGGAAT GCTGG GTCT CCGGC TTTTCCTTCGGCGCC Rru_A2030 2342888 - 2343550 + | hypothetical protein anmK 2344629 - 2343502 - | anhydro-N-acetylmuramic acid kinase TERM 2543 2343663 - 2343634 - G 78 -6.3 -4.59773 | overlap 2343642 GCGCACGGCCAAAAA GGCGAAAGCCTGG GCTT CCAGGGCGTCACC GTCCCATCCCACCGC Rru_A2032 2344729 - 2345985 + | tyrosyl-tRNA synthetase TERM 2544 2346853 - 2346875 + G 74 -9.8 -3.85698 | TGCTTTACGCCAATG CCTCGGCC CGACTGC GGCCGGGG TTTCTGGACGGCGAG Rru_A2033 2346075 - 2348675 + | PAS/PAC sensor hybrid histidine kinase TERM 2545 2348657 - 2348692 + F 75 -2.5 -4.97312 | overlap 2348658 CGGTCCCGGAGCGAC GGTC-TCGACGACGGGG TAAT CCTCGGCG-CGATGACA TTTTTACTTCATTTT TERM 2546 2348821 - 2348808 - g 86 -8.1 -4.93316 | overlap 2348799 GAAGAATATGAAAAA GCTCC ATAA GGAGC TCAAACGCTTCTCGG TERM 2547 2348971 - 2348988 + G 71 -14.1 -2.88544 | ACCTTTCTCGTCCTC GCCGCCG TCGT CGGCGGC TATATGGCGCTCAAC Rru_A2034 2348773 - 2350269 + | phosphate transporter TERM 2548 2350795 - 2350805 + G 72 -6.8 -4.18018 | GGGCCTGCCCGCCGT TCCG ATC CGGA TTTTCGGTCCGCCGC Rru_A2035 2350274 - 2351290 + | phosphate binding protein, putative Rru_A2036 2351699 - 2351313 - | hypothetical protein TERM 2549 2351647 - 2351624 - G 74 -5.2 -4.56597 | gap 1 CGGCGGCCTCAAAAA CCAGCCAGCGC TTG GC-CTGTCCGG CATGGCCGGCGACCA Rru_A2037 2354978 - 2351712 - | hypothetical protein TERM 2550 2352837 - 2352821 - G 74 -12.3 -3.53761 | CAAGCCTTGCCGAAA CCTTGGC GGC GCCAAGG CTGCCGGCGGGCTTG TERM 2551 2353074 - 2353062 - G 75 -4.7 -4.57569 | GTAGCGGCTCAAAAA CGGCG CAT CGACG AAGTTCTCGCGCCAG TERM 2552 2354750 - 2354712 - G 100 -21 -3.14344 | CAGCCGGGCGATCAA CCGGTGGTCGGCGTCGCG CAC CACCACGCCGACCACCCG CAAATTCAGCGGACG TERM 2553 2356979 - 2357000 + G 72 -7.1 -4.18762 | CCTTGATCTGGTGCG GCGCTGGGC CAAC GACCTGCGC TTTTCCATCGGCGTT TERM 2554 2357665 - 2357628 - g 74 -10.5 -3.87994 | opp_overlap 2357632 2357661, overlap 2357658 ATGGAGCGCGACAAA CCCGCCGCCAGCCCC TGGGACGT GAAGCTAGCGCCGGG CGGGTTGGTCGATAT Rru_A2038 2355066 - 2358533 + | glutamate-ammonia-ligase adenylyltransferase Rru_A2039 2359369 - 2358530 - | hypothetical protein Rru_A2040 2360358 - 2359390 - | peptide chain release factor 2 TERM 2555 2360686 - 2360711 + r 100 -11.7 -5.24129 | opp_overlap 2360686 GATGCCACGATCAAA GGGCGGGCCCC TGGC GAAGCCCGCCC TTTTTTATCGAAAGC TERM 2556 2360711 - 2360686 - R 95 -16.1 -3.79251 | opp_overlap 2360686 GATGCCACGATCAAA GGGCGGGCCCC TGGC GAAGCCCGCCC TTTTTTATCGAAAGC Rru_A2041 2362199 - 2360832 - | aminotransferase Rru_A2042 2362440 - 2363006 + | transcriptional regulator Rru_A2043 2364065 - 2363022 - | hypothetical protein TERM 2557 2364275 - 2364252 - R 82 -11.7 -3.8646 | gap 1 CACGAACAAGCCAAA GGC-CGCCCG TTCCT CGGGCGTGCC CTCATCAAGACGTTC Rru_A2044 2364754 - 2364320 - | hypothetical protein Rru_A2045 2365677 - 2364850 - | binding-protein dependent transport system inner membrane protein TERM 2558 2365324 - 2365300 - G 71 -9.2 -3.78699 | overlap 2365293 GAAAAACAGATAGAA GCCGACGGCG GTGAT CACCACCGGC ACGATCATCGGCGAC Rru_A2046 2366947 - 2365727 - | binding-protein dependent transport system inner membrane protein TERM 2559 2366487 - 2366477 - G 79 -4.6 -4.77036 | overlap 2366478 CTGCATCAGGAAAAA CGCC GTA AGCG GTCCCGAGGCCCGGT TERM 2560 2366674 - 2366641 - G 74 -15.9 -2.56046 | TGAAATCGTAATTGA GACGCCGCGCCGCCG TCGC CAGCGTCGCCGCGTC GCGGCTGGCCCGCAG TERM 2561 2367023 - 2366971 - R 100 -15.7 -4.36914 | gap 3, opp_overlap 2367010 2367011 2367019, overlap 2366977 2366978 CCCCTTCCTAGAAAA CCCAAACCGTGCGCCCGGGAACACCT CCCC AGG-GTTCCCGGGCGC-CGAGC-GGG CGCGTCCTTACTGGA TERM 2562 2367018 - 2366977 - R 100 -19.6 -3.96705 | gap 2, opp_overlap 2367010 2367011, overlap 2366971 2366978 CCTAGAAAACCCAAA CCGTGCGCCCGGGAACACCT CCCC AGG-GTTCCCGGGCGC-CGA GCGGGCGCGTCCTTA TERM 2563 2367017 - 2366978 - R 95 -20.9 -2.973 | gap 2, opp_overlap 2367010 2367011, overlap 2366977 2366971 CTAGAAAACCCAAAC CGTGCGCCCGGGAACACCT CCCC AGG-GTTCCCGGGCGC-CG AGCGGGCGCGTCCTT Rru_A2047 2368083 - 2367031 - | extracellular solute-binding protein TERM 2564 2367658 - 2367638 - G 77 -6.8 -4.49556 | opp_overlap 2367637 2367638 TTGGTATCAAAGAAA TCGGCCCA GCTTT TGGGCGGA GTCTTCAGTTTGTCC Rru_A2048 2369236 - 2368145 - | ABC transporter component Rru_A2049 2370037 - 2369441 - | TetR family transcriptional regulator TERM 2565 2369612 - 2369600 - G 76 -2.6 -4.88736 | GACCATCGACAAAAA CACC TCGGC GGCG ATTCTCGGGTTGTCG TERM 2566 2369728 - 2369712 - G 88 -7.9 -5.00616 | overlap 2369713 CCGCGTTCTAAAAAA GCCTCGG CGA CCGAGGG AAACTTCTGCGCCGC TERM 2567 2369727 - 2369713 - G 72 -11.4 -3.60048 | overlap 2369712 CGCGTTCTAAAAAAG CCTCGG CGA CCGAGG GAAACTTCTGCGCCG TERM 2568 2370049 - 2370078 + H 77 -4.1 -5.00884 | opp_overlap 2370017 2370034, overlap 2370051 GCATGGCAGCCCGCC GCGCGTCTCCCCG CCCG CAGGGAGATCCCC TTTTTTCCAACGCCT Rru_A2050 2370148 - 2371428 + | secretion protein HlyD TERM 2569 2372787 - 2372813 + G 85 -5.8 -5.0133 | opp_overlap 2372759, overlap 2372756 2372775 CGGCATCGCCCTGGT GCTGTCGGCG GTGTTCG TGCCGATGGC TTTTTTCAGCGGCTC TERM 2570 2373113 - 2373148 + G 71 -3.3 -4.63218 | gap 1, opp_overlap 2373138, overlap 2373139 TGTTGTTCGTGCGCC TGCCCTCGTCGTTCCT GCCCA ACGAG-GACCAGGGCA TTTTGTTCGCCCAGG TERM 2571 2373540 - 2373520 - g 85 -7.5 -4.72986 | opp_overlap 2373520 CAGGGCCACGAAAAA CTGATGGCG GCG CGCAACCAG TTGCTGGGCATGGCG Rru_A2051 2371444 - 2374596 + | hydrophobe/amphiphile efflux-1 HAE1 TERM 2572 2375423 - 2375440 + G 79 -6.9 -4.59511 | CTGGCCGGCACGCCG CCGCTCG ATCT TGGGCGG TTTTTCCCCAATGTT TERM 2573 2375629 - 2375677 + G 81 -10.8 -4.13995 | gap 1 CGGCGATCTGTTTAG CAGCGGCTCCCTG-GCCTGGAGC GTCG GCCCCTCGCTCAGCGTGCCGCTG TTTGATTTCTGGCGC Rru_A2052 2374586 - 2376085 + | RND efflux system, outer membrane lipoprotein, NodT TERM 2574 2376717 - 2376760 + G 70 -11.6 -3.38046 | opp_overlap 2376716 2376717, overlap 2376716 TCACCGTCCCAAAAC GCTCGAGGACATGGTCGACC ACAC GGTCGGCCGGGCCCTTGACC TGTTTGGCATCGACA Rru_A2053 2376244 - 2376855 + | phenylacrylic acid decarboxylase Rru_A2054 2377343 - 2376945 - | Hpt domain-containing protein Rru_A2055 2377508 - 2378302 + | peptidase S49 TERM 2575 2378349 - 2378337 - f 74 -6.9 -4.40561 | overlap 2378338 GGCGCGCAAAAAGAA GCCGC TGG ACGGC GGACGAAGAGCGGTC Rru_A2056 2378407 - 2379048 + | carbonate dehydratase TERM 2576 2379145 - 2379167 + G 77 -13.4 -3.57561 | overlap 2379146 TGCGCTCATCCCGCT TCTGCAGGCC CGC GGCCTGCGGG TTTCGACGGTTAAGC TERM 2577 2379146 - 2379166 + G 72 -14.7 -2.74322 | overlap 2379145 GCGCTCATCCCGCTT CTGCAGGCC CGC GGCCTGCGG GTTTCGACGGTTAAG Rru_A2057 2379074 - 2379592 + | molybdopterin-guanine dinucleotide biosynthesis MobB region TERM 2578 2379654 - 2379666 + F 84 -10.5 -4.21319 | CGCCCCGAACTCGGG GGCCG GTG CGGCC TTTGTTGGACTTGCT TERM 2579 2379747 - 2379726 - g 81 -3.7 -5.02231 | gap 1, overlap 2379742 CAAAAAGATGAAAAA GCCGATCTTC CCA AAAG-CCGGC CCGTCGCCGGCTGGA TERM 2580 2379758 - 2379742 - g 81 -10.8 -4.08767 | opp_overlap 2379751 2379752, overlap 2379726 CCGATCTTCCCAAAA GCCGGC CCGTC GCCGGC TGGATGACCCGGCGC TERM 2581 2380710 - 2380737 + G 78 -10.5 -4.15106 | overlap 2380711 ATCTCCAAACTCGAT TGCGGGGCGGT TGAGCC GCTGCCCCGCG TTTTCGCCCTTGGTC Rru_A2058 2379699 - 2381198 + | histidine kinase Rru_A2060 2384776 - 2381840 - | FAD linked oxidase Rru_A2059 2381188 - 2381943 + | metal dependent phosphohydrolase, HD region TERM 2582 2382585 - 2382541 - GT 100 -12.9 -4.3534 | overlap 2382542 CTTGAATGACGAAAA CGCCGCGCGG-CGCCGGCC GAGCCGAGG GGCCGGCGACCAC-CGGCA CCCGCATGCGCCTCA TERM 2583 2382584 - 2382542 - GT 78 -14.2 -3.20722 | overlap 2382541 TTGAATGACGAAAAC GCCGCGCGG-CGCCGGCC GAGCCGAGG GGCCGGCGACCAC-CGGC ACCCGCATGCGCCTC TERM 2584 2384703 - 2384733 + gT 76 -14 -3.04322 | opp_overlap 2384697 2384696 CCGCGAAATCCGGCC TCGGCCAGGGCC GTTCCCA GGCCCTCGCCGA TCTTCGCCCATTCCG TERM 2585 2385036 - 2385004 - TR 100 -19.2 -3.95584 | TGTCGACCAACGAAA TTGGGGCGGCCCCC TTCGC GGAAGCCGCCCCAA TCCACAAAACGACCG TERM 2586 2385044 - 2385059 + Tr 80 -3.2 -5.13137 | opp_overlap 2385046, overlap 2385046 CGCCCCAATCCACAA AACGAC CGAG GTCGTC TTTTTAGTTTATTTC TERM 2587 2385057 - 2385046 - TR 74 -5.8 -4.4715 | opp_overlap 2385044 2385046 CCCCAATCCACAAAA CGAC CGAG GTCG TCTTTTTAGTTTATT Rru_A2061 2385682 - 2385068 - | hypothetical protein TERM 2588 2385921 - 2385886 - R 100 -23.4 -3.54424 | gap 1, overlap 2385863 2385862 2385887 GGGGACGGCGGGAAA GC-CCCCGGTCCCGACC AGC GGTCGGGACCGGGAAGC GCTAGCGGGGATCAC TERM 2589 2385919 - 2385887 - R 100 -23.5 -2.72511 | overlap 2385863 2385862 2385886 GGGACGGCGGGAAAG CCCCCGGTCCCGACC AGC GGTCGGGACCGGGAA GCGCTAGCGGGGATC Rru_A2062 2386310 - 2385933 - | hypothetical protein Rru_A2063 2386572 - 2387240 + | GntR family transcriptional regulator TERM 2590 2387340 - 2387312 - f 73 -4.5 -4.68545 | ATCCAATATACAAAA TGGCTTTCGTCCC TGG AGGCCAAAACCCA TGCCCTCGCCCGCCG TERM 2591 2388558 - 2388515 - g 72 -13 -3.14132 | gap 1, opp_overlap 2388525 TCTTGGCCTGACCAA TGCCCCGGG-CACGGCGGCGA TGA TCGCCGCCCTGGCCTGTGGCG AGACGGCGCCGATCG TERM 2592 2388563 - 2388584 + G 85 -10.1 -4.2349 | overlap 2388525 GGCCTGTGGCGAGAC GGCGCCG ATCGACGC CGGCGCC TTTTCCCTCTCCCGC Rru_A2064 2387340 - 2388608 + | FAD dependent oxidoreductase TERM 2593 2389328 - 2389340 + G 72 -4.7 -4.52589 | overlap 2389329 GATGCCCTGGCCCAG GGGCG CAA CGCCG TTTTCTATGGCGAGC Rru_A2065 2388620 - 2389621 + | proline racemase TERM 2594 2389958 - 2389942 - g 70 -3.6 -4.56597 | opp_overlap 2389914, overlap 2389943 CGCCTTCGCCAAAAA GGCCGA GGAGA TCGGCG CCGATGGCTTCATGA Rru_A2066 2389661 - 2390575 + | dihydrodipicolinate synthetase TERM 2595 2390624 - 2390587 - T 79 -12.6 -3.55071 | opp_overlap 2390590, overlap 2390588 GTAGAGCCCGCCAAA GCCCTGGCGGAGCCGC CCGTTC GCTCCTCCGCCAGGGA CCTGCCCCTTATTCC TERM 2596 2390623 - 2390588 - T 79 -16.1 -2.72829 | opp_overlap 2390590, overlap 2390587 TAGAGCCCGCCAAAG CCCTGGCGGAGCCGC CCGTTC GCTCCTCCGCCAGGG ACCTGCCCCTTATTC Rru_A2067 2391835 - 2390633 - | acyltransferase 3 TERM 2597 2391216 - 2391189 - G 70 -6.2 -4.29621 | gap 1, overlap 2391214 CAGAAATAAAGGAAA CCGTCCA-CCGCC AAC GGCGGATAATCGG CCAGCCCCTTCAAGG mgsA 2392223 - 2392690 + | methylglyoxal synthase TERM 2598 2393332 - 2393311 - T 82 -14.5 -3.23452 | opp_overlap 2393311, overlap 2393306 ATTTCTATAATTCAA CACGGCATC GTAA GATGCCGTG TTCTCTTCGGAATAA TERM 2599 2393311 - 2393332 + T 90 -14.5 -3.66784 | opp_overlap 2393311 2393306 ATTTCTATAATTCAA CACGGCATC GTAA GATGCCGTG TTCTCTTCGGAATAA Rru_A2069 2394367 - 2393516 - | hypothetical protein TERM 2600 2394563 - 2394585 + G 84 -13.4 -4.02719 | CGTGGTGATTATTGG TGGCGGTGTC ATC GGCGCCGCCA TTTCCTATTTCCTGG Rru_A2070 2394528 - 2395706 + | FAD dependent oxidoreductase TERM 2601 2395760 - 2395712 - f 91 -13.8 -3.75169 | gap 1, overlap 2395713 CATCATCTGATCAAA GGGGCTTCGCCAA-GCCCCGCGG CGGG CCGGGGGGCCTTGGCGAAGACTG ACCACTCACACCACT TERM 2602 2395759 - 2395713 - f 85 -17.3 -2.8478 | gap 1, overlap 2395712 ATCATCTGATCAAAG GGGCTTCGCCAA-GCCCCGCGG CGGG CCGGGGGGCCTTGGCGAAGACT GACCACTCACACCAC TERM 2603 2396252 - 2396264 + G 70 -6.2 -4.19735 | overlap 2396241 CTTGGGCGTGGTCGC CGGC ATCAC GCCG TTTAATTTTCCGGCG Rru_A2071 2395812 - 2397317 + | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 2604 2397360 - 2397334 - T 100 -19.5 -5.1356 | CCTGACCAAGAAAAA CCCCGCCCCTT TTTCC AAGGGGCGGGG GTGAGAGCGGGGCGG aspS 2399215 - 2397395 - | aspartyl-tRNA synthetase Rru_A2073 2399339 - 2400499 + | ribonuclease D TERM 2605 2400527 - 2400503 - T 91 -13.5 -3.83844 | opp_overlap 2400519, overlap 2400519 2400520 CTCAGCAACTAATAA GCCGCCCGCTC CCA AAGCGGCCGGC CGCCTTTCGCGGCCT TERM 2606 2400538 - 2400590 + T 100 -29.3 -3.21099 | opp_overlap 2400520, overlap 2400541 CCGGCCGCCTTTCGC GGCCTGAGAGCGGTGAGCGGGGAAC TCT GGTTCCCGCTCACCGCTCTCAGATC TTGATGGTCAAGCAA TERM 2607 2400541 - 2400587 + T 100 -31.8 -2.50016 | opp_overlap 2400520, overlap 2400538 GCCGCCTTTCGCGGC CTGAGAGCGGTGAGCGGGGAAC TCT GGTTCCCGCTCACCGCTCTCAG ATCTTGATGGTCAAG Rru_A2074 2401740 - 2400646 - | thiosulphate-binding protein TERM 2608 2401905 - 2401882 - g 70 -11 -3.53444 | GCATTCTTGGCGAAA CCCGGACCAT CGCC ATGGTCGGGG CCTCGGCCAATTGGA TERM 2609 2403308 - 2403291 - g 83 -2.5 -5.15117 | overlap 2403293 GAAAACGCCAAAAAA GTCGCGG CCTT CCTCGCC GCCCATCCCAAGGTG Rru_A2075 2401827 - 2403665 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 2610 2403677 - 2403718 + F 100 -23.2 -2.62184 | GTGACTCCTCAGCCA TGAGGGGGAAGGGGAAAG TCTTCT CGTTCCCCTTCCCCCTCA TGGTATACCAGAAAA Rru_A2076 2403936 - 2405621 + | chemotaxis sensory transducer Rru_A2077 2405947 - 2405747 - | hypothetical protein TERM 2611 2405978 - 2406016 + H 88 -7.4 -4.89567 | opp_overlap 2405971 2405978, overlap 2405981 AAACAAGACAAGGCA TTCCCCTGGTGGGCGA CATCCCT TCGTCCACTAGGGTCA TTTTATCTTTTAAAA TERM 2612 2405981 - 2406013 + H 81 -13.5 -3.31831 | opp_overlap 2405971 2405978, overlap 2405978 CAAGACAAGGCATTC CCCTGGTGGGCGA CATCCCT TCGTCCACTAGGG TCATTTTATCTTTTA Rru_A2078 2406209 - 2407894 + | chemotaxis sensory transducer Rru_A2079 2409321 - 2407957 - | L-glutamine synthetase Rru_A2080 2409450 - 2410055 + | hypothetical protein Rru_A2081 2410058 - 2410426 + | hypothetical protein Rru_A2082 2410569 - 2411198 + | hemerythrin HHE cation binding region TERM 2613 2411231 - 2411280 + T 91 -19.5 -3.21099 | gap 2, opp_overlap 2411207 2411238 CGCGTCGCCAAGACG GC-C-GAAAGCGGCGAGCGGGAA ATCCGG TTCCCGCTCGCCGCTCTCAGAGC TTGATCGTCACGCAA TERM 2614 2411271 - 2411238 - T 100 -24 -3.57615 | opp_overlap 2411231 CCAAGACGGCCGAAA GCGGCGAGCGGGAA ATCCGG TTCCCGCTCGCCGC TCTCAGAGCTTGATC Rru_A2083 2411804 - 2411337 - | CreA TERM 2615 2411889 - 2411864 - R 100 -11.2 -4.75472 | GGTAGACGAACAAAA GGCCGGATTC ACGGCG GAATCCAGCC CGTCCCACATTCAAT TERM 2616 2411975 - 2411937 - R 100 -14.8 -4.41348 | gap 2, overlap 2411939 TTTGGGGGAAACAAA TC-GGGGCTTTCGGG-GA GGAAA TCACCCGAAAGCCCCTGA TCAGCCAAGGCTCGG TERM 2617 2411972 - 2411939 - R 83 -17.6 -2.54371 | gap 1, overlap 2411937 TGGGGGAAACAAATC GGGGCTTTCGGG-GA GGAAA TCACCCGAAAGCCCC TGATCAGCCAAGGCT Rru_A2084 2413343 - 2412159 - | hypothetical protein TERM 2618 2412317 - 2412292 - G 79 -4.6 -4.82901 | opp_overlap 2412316, overlap 2412294 CCGGGCTGATAAAAA GCGCTGACCG GCACGG CGGTCACCCC GGCCTCGCAGGTGAT TERM 2619 2412910 - 2412879 - G 78 -10 -4.07568 | gap 1 GGTGCGCGGCGAAAA GGCCGCGGCCAGGGC CTC GCGC-GGCAGCGACC AGCGCGGCGGCTCCA TERM 2620 2413722 - 2413710 - g 85 -7.7 -4.7373 | overlap 2413721 GGATTTCATGAAAAA GATCG AAG CGATC ATCAAGCCCTTCAAG Rru_A2085 2413702 - 2414040 + | nitrogen regulatory protein P-II (GlnB, GlnK) TERM 2621 2414233 - 2414217 - g 74 -5.1 -4.47217 | opp_overlap 2414217, overlap 2414211 AATGATTAAGGAAAA CGACG TTAAGTT CGTCG ATTTCCGCTTCACCG Rru_A2086 2414176 - 2415585 + | L-glutamine synthetase TERM 2622 2415651 - 2415685 + F 100 -21.6 -4.9218 | opp_overlap 2415655, overlap 2415655 CCCGACCTTTTTTGA TAAAGCCCCGTCGGCA GCC TGTCGGCGGGGCTTTA TTTTTGTCATCGATC TERM 2623 2415681 - 2415655 - f 91 -13.6 -3.85817 | opp_overlap 2415655 2415651 ACCTTTTTTGATAAA GCCCCGTCGGCA GCC TGTCGGCGGGGC TTTATTTTTGTCATC TERM 2624 2415655 - 2415681 + F 100 -18 -4.98911 | opp_overlap 2415655, overlap 2415651 ACCTTTTTTGATAAA GCCCCGTCGGCA GCC TGTCGGCGGGGC TTTATTTTTGTCATC Rru_A2087 2415762 - 2416679 + | extracellular solute-binding protein TERM 2625 2417016 - 2417029 + G 81 -8.1 -4.59376 | GTTTCGCAATATCCC GCTGC TGGT GCAGC TTTTCCTTTGGTACT Rru_A2088 2416789 - 2417520 + | amino acid ABC transporter permease TERM 2626 2417639 - 2417688 + G 73 -11.3 -3.64487 | gap 1, overlap 2417633 CGGCACCCTGGCCGG CGGGCTGCTTGGCACGGCCTTGGC CAT GCTGCGGCTGT-CCAGCCTGCCCG TTCTTCCCCATCTGG Rru_A2089 2417532 - 2418224 + | amino acid ABC transporter permease TERM 2627 2418685 - 2418715 + G 72 -11.8 -3.53012 | overlap 2418690 CGTGGCGATCGCCCG CGCCCTGGCGATGG ACC CCATCGCCATGCTG TTTGACGAGCCGACC TERM 2628 2418690 - 2418710 + G 76 -15.5 -2.84325 | overlap 2418685 CGATCGCCCGCGCCC TGGCGATGG ACC CCATCGCCA TGCTGTTTGACGAGC Rru_A2090 2418224 - 2418967 + | ABC transporter component TERM 2629 2419021 - 2419054 + F 100 -20.4 -5.47431 | gap 1, opp_overlap 2419013 GAACCGATTACCACG CGGGCGCC-AAGGGG ATACC CCCCTTCGGCGCCCG TTTTTTATGTCTTCA Rru_A2091 2419224 - 2419481 + | hypothetical protein TERM 2630 2419510 - 2419491 - f 86 -15 -3.31144 | opp_overlap 2419491 GGCTGACGCGGATAA GGCCGGAC CCCC GTCCGGCC TTTCCCCCACGCTCA TERM 2631 2419491 - 2419510 + F 90 -15 -3.53444 | opp_overlap 2419491 GGCTGACGCGGATAA GGCCGGAC CCCC GTCCGGCC TTTCCCCCACGCTCA Rru_A2092 2419544 - 2419960 + | hypothetical protein TERM 2632 2419983 - 2420030 + F 80 -14.6 -3.01712 | CCGGCGGGTTTTATA GGGAGCGGCGGGCGGAGACCGG GATG CCGGGGTCCGCCCGCTTACCCC TGTTCAGCCACCGCA Rru_A2093 2420215 - 2420973 + | methyltransferase FkbM TERM 2633 2420996 - 2420978 - T 100 -8.8 -5.00884 | opp_overlap 2420960 AGTTTTTCTAAAAAA GCCGGC TTATTCC GCCGGC TTGCCCGCGCCCTCG Rru_A2094 2424097 - 2420984 - | acriflavin resistance protein TERM 2634 2421545 - 2421533 - G 79 -4.8 -4.72986 | overlap 2421544 CAGGGCCATCAAAAA GGTG AACAG CACC CCCCCCGAGGTTTCC TERM 2635 2421942 - 2421998 + g 83 -8.6 -4.64676 | gap 1, overlap 2421947 CCGATGGCCTCCACC CCGACCCCCAGATCATCGGCGCGGTCG CGGT CGATGCCGACGCTGAGCTGGGG-TTGG TTTTGTTCGAAATCG TERM 2636 2421947 - 2421994 + g 74 -10.4 -3.82261 | overlap 2421942 GGCCTCCACCCCGAC CCCCAGATCATCGGCGCGGTCG CGGT CGATGCCGACGCTGAGCTGGGG TTGGTTTTGTTCGAA TERM 2637 2423004 - 2422972 - G 73 -6.2 -4.30844 | overlap 2422959 2422974 2422982 AGCCCAGCAGCAAAA TGCCGATGAAGGTG CCGAT CACCGCCACCGGGA TGGTCACCGTCGGCA TERM 2638 2423878 - 2423891 + g 80 -9.5 -4.1899 | TGCGAATGCCCGAGA CGCCG GCGA CGGCG TTTTCAATGACCTCG Rru_A2095 2425293 - 2424229 - | secretion protein HlyD Rru_A2096 2427628 - 2425448 - | cell divisionFtsK/SpoIIIE Rru_A2097 2428071 - 2427628 - | hypothetical protein Rru_A2098 2432686 - 2428184 - | hypothetical protein TERM 2639 2428467 - 2428483 + g 73 -13.7 -3.09933 | overlap 2428474 ACACCGGCCAATTGG CTGGCCG CCT CGGCCAG TTGGATGGCTTCGAA TERM 2640 2428622 - 2428580 - G 78 -6.3 -4.63218 | gap 2, opp_overlap 2428589 CGGTTCGGAAGAAAA GCCGATTTGCGGGTCCGAGGC GGT GCCGCTGAC-CG-AAACCAGC GCCACCACCTCGCCC TERM 2641 2428727 - 2428694 - G 79 -13.2 -3.72893 | gap 1, overlap 2428666 2428663 2428721 2428722 CATGCCGCCATCAAA CCGCACCT-CGCCCT TGCGC AGGGAGAAGGTGCGG CCAAGCACATCGGCC Rru_A2099 2434586 - 2432688 - | surface antigen TERM 2642 2434183 - 2434142 - G 77 -10.7 -3.89346 | gap 1 TGGCGACCTGATAAA CCGGGCCGG-GATCGGCGCG AAC CTCGACCATGGCCGGCCCGG GCGCGGAGTCGCGGA Rru_A2100 2435635 - 2434712 - | hypothetical protein TERM 2643 2435210 - 2435238 + g 72 -11.7 -3.53444 | gap 1, opp_overlap 2435169 GGGCACGCCGGGCGA GCGCCGCCG-GC GGATCA GCACGGTGGCGC TTTCCACGAACATCA TERM 2644 2435532 - 2435512 - G 79 -8.2 -4.34345 | overlap 2435513 2435514 CATAGAGGATCAAAA GCGGCGTC AGCAG GAAGCCGC CGCCAACCCCGAACA Rru_A2101 2437178 - 2435742 - | two component, sigma54 specific, Fis family transcriptional regulator Rru_A2102 2437701 - 2437438 - | hypothetical protein TERM 2645 2437665 - 2437641 - G 79 -7.1 -4.62475 | overlap 2437659 ATCCATAAAGGAAAA CGCAGGGTT GGTCGAT AACCCGGCG CCGGTGGACAGTATG Rru_A2103 2438923 - 2437805 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 2646 2437924 - 2437912 - G 75 -3.3 -4.71776 | overlap 2437921 GAATAGGCAACAAAA GGTCT ATA AGTCC ATCCGTTCCGCTATG Rru_A2104 2439745 - 2438951 - | ABC transporter component TERM 2647 2438990 - 2439017 + g 72 -8.5 -4.10161 | GTCGATCTCTTCGCC GC-GCTGGCGCGA GAAT TCG-GCCAGCAGC TTTTCCACCGTCATC Rru_A2105 2440680 - 2439742 - | inner-membrane translocator TERM 2648 2440475 - 2440449 - G 81 -12.2 -3.7732 | GCTTGACATTAAGAA GAGCGGTGACCG CCC CGGCCATCGCCC CGGCGACGATGGCGA Rru_A2106 2441787 - 2440816 - | hypothetical protein TERM 2649 2441363 - 2441392 + g 72 -8.5 -4.07568 | gap 1 GGCAAGGGCAGCATG TCGCTGC-TGCCGG TGA CCGGCACGCCGGGA TTTTCCAGCGAGCGC TERM 2650 2442563 - 2442577 + G 75 -7 -4.36914 | GATGGAGCACCTGCG CCGCGC CCT GCCCGG TTTTCTGGCCCCGGC Rru_A2107 2442015 - 2443412 + | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 2651 2443525 - 2443541 + T 74 -5.8 -4.56597 | gap 1 GGGGATTTGCTTTAC CG-GGCC TCGC GGCCGCG TTTTTCGCCCGGGGC Rru_A2108 2446295 - 2443521 - | Hpt sensor hybrid histidine kinase TERM 2652 2445566 - 2445527 - G 91 -14.4 -4.18018 | gap 1, overlap 2445528 GCCGCTCATTGAAAA TGCG-CATCACCCCATCCA GGC TGGATCGGGTGATGCCGCT GCGCCGCTCGACGAC TERM 2653 2445565 - 2445528 - G 86 -17.9 -3.10597 | gap 1, overlap 2445527 CCGCTCATTGAAAAT GCG-CATCACCCCATCCA GGC TGGATCGGGTGATGCCGC TGCGCCGCTCGACGA TERM 2654 2446423 - 2446396 - R 100 -16.4 -4.36914 | gap 1, overlap 2446418 CCTTCGCGCACAAAA GGCCCG-TTCTCC TTA GGAGAAACGGGCC TCTCGCAAGTTCAAG Rru_A2109 2448813 - 2446474 - | ATP-dependent Clp protease ATP-binding subunit ClpA TERM 2655 2448204 - 2448241 + g 73 -11.3 -3.64703 | overlap 2448206 GGATCTGGATCGTCC GCTCGACTTCCTGATCG CGAC CGATCAGCGGGTCGATC TTTCCCTCGGCGGCC TERM 2656 2448206 - 2448239 + g 73 -12.5 -3.40597 | overlap 2448204 ATCTGGATCGTCCGC TCGACTTCCTGATCG CGAC CGATCAGCGGGTCGA TCTTTCCCTCGGCGG clpS 2449465 - 2449052 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2657 2449620 - 2449580 - R 100 -13.4 -4.42386 | gap 1, opp_overlap 2449586, overlap 2449586 GCGGGAGCGAGAAAA GGGAAAGGCTTCCCACAGG AGGC CCTG-GGGAAGCCTTTTTC GACCGAAGGTCGTGC TERM 2658 2449586 - 2449614 + r 100 -15.4 -4.56597 | gap 1, opp_overlap 2449580 2449586 GCGAGAAAAGGGAAA GGCTTCCCACAGG AGGC CCTG-GGGAAGCC TTTTTCGACCGAAGG TERM 2659 2449614 - 2449586 - R 95 -15.4 -3.96705 | gap 1, opp_overlap 2449586, overlap 2449580 GCGAGAAAAGGGAAA GGCTTCCCACAGG AGGC CCTG-GGGAAGCC TTTTTCGACCGAAGG Rru_A2111 2450588 - 2449671 - | hypothetical protein TERM 2660 2450538 - 2450564 + g 90 -3.7 -5.4505 | gap 1, opp_overlap 2450548, overlap 2450539 2450549 GACCGACGACGGGTC GTCGG-GAAGAT CCGG ATCGTCTCCGGC TTTTTTCTTAGGGGG TERM 2661 2450838 - 2450810 - R 95 -12.3 -4.26076 | GCAGGGCGATCAAAA GCCCTGCCCCAGG CCG CCCAGGGCCGGAC CATCGATCAACCCGG Rru_A2112 2451517 - 2450804 - | hypothetical protein TERM 2662 2452719 - 2452685 - g 78 -15.1 -3.28712 | gap 2 GCCCCCGGCCTACAA GCCCGGCTCGCTGACCG CCT CGGTCAGCG-GC-GGAC GGACCCAGCAGATGG TERM 2663 2452936 - 2452884 - g 78 -14.1 -3.59979 | opp_overlap 2452898 2452913 2452919, overlap 2452913 2452914 GGCGCCTATGCCAAA TCGGCGGCGGCGACGGC-GGCGGCC AATAA GGCCATCGGCCTTCTC-GCCGCCGA GGCCCGCAGGCAGGT Rru_A2113 2451696 - 2453102 + | Serine-type D-Ala-D-Ala carboxypeptidase Rru_A2114 2454402 - 2453128 - | O-antigen polymerase TERM 2664 2454452 - 2454438 - R 70 -10 -3.54424 | overlap 2454448 GGCGACCTTGCCAAA GATCCC AAA GGGATC AAATCAAGATCCGAA Rru_A2115 2456107 - 2454473 - | phosphoglucomutase Rru_A2116 2457465 - 2456149 - | UDP-glucose 6-dehydrogenase TERM 2665 2457513 - 2457491 - R 100 -22 -3.76373 | CCTTGAACAGCGAAA CGGGCGGCGG AAC CCGCCGCCCG GAAGAGAGATCAGAT Rru_A2117 2458401 - 2457523 - | UDP-glucose pyrophosphorylase TERM 2666 2457858 - 2457886 + g 75 -11.7 -3.72374 | overlap 2457855 CCCGGGCCAGGGTGC CGTTGTCCTCGAC GAC GTCGAGGATGCCG TATTTGTTGGTGCGC TERM 2667 2458460 - 2458441 - R 78 -7 -4.67755 | overlap 2458443 ATACGGATCGAAAAA CACCCCCG GAAC CGGGGGAA AAGACCTGAAAGCCG TERM 2668 2458458 - 2458443 - R 82 -11.8 -3.95214 | overlap 2458441 ACGGATCGAAAAACA CCCCCG GAAC CGGGGG AAAAGACCTGAAAGC Rru_A2118 2459448 - 2458621 - | ATPase Rru_A2119 2461666 - 2459597 - | molybdopterin oxidoreductase TERM 2669 2460554 - 2460523 - G 91 -14.4 -4.25104 | gap 1, overlap 2460524 TGTTTTGGATCAAAA GCGCCTTGACCGGCG GCC CGCCGGCCAGGGC-C TCGGCATCGCCGGTC TERM 2670 2460554 - 2460524 - G 76 -14.6 -3.14848 | overlap 2460523 GTTTTGGATCAAAAG CGCCTTGACCGGCG GCC CGCCGGCCAGGGCC TCGGCATCGCCGGTC TERM 2671 2461903 - 2461878 - g 95 -19.1 -3.60627 | opp_overlap 2461882 CCACTCCATGGCAAA CAGACTGCCCG ATAT CGGGCAGTCTG TCGACAGGGCGACCG TERM 2672 2462579 - 2462589 + G 82 -4.6 -4.9218 | CCCGCCCCTGCGCCC CCGG CTA TCGG TTTTTCTCCTCGGTC Rru_A2120 2461858 - 2462910 + | Acyl transferase region TERM 2673 2463186 - 2463199 + GT 79 -4.5 -4.72846 | TCTGCGCTGTCCGCC CCATG ACGC CGTGG TTTTTGGCTATCTCG TERM 2674 2463442 - 2463472 + GT 70 -6.1 -4.25104 | gap 1, opp_overlap 2463438, overlap 2463444 CTGCTGGAAGACGCC TATGGCCTG-CCGC TGGC GCGCTCGGGCCATG TTTTCGTCGGCGCGG Rru_A2122 2464989 - 2464039 - | hypothetical protein Rru_A2121 2462962 - 2464158 + | hypothetical protein TERM 2675 2464295 - 2464263 - GT 80 -9 -4.20696 | opp_overlap 2464272, overlap 2464281 GGAGGAAGCCCAAAA CCCAGGCGACGGCG AAGAG CGTCGTGGTCTGGG CCAGCGGTGGAAAGG Rru_A2123 2465780 - 2464986 - | hypothetical protein TERM 2676 2465643 - 2465609 - G 72 -11.5 -3.55563 | AGCCCAGGCGCGAAA GATCGGCCAGCAG-GGC GCC GCCGCCGC-AGCCGATC TCCAGCAGCCGCCCC Rru_A2124 2466851 - 2465829 - | glycosyl transferase family protein TERM 2677 2466233 - 2466247 + g 72 -7 -4.20696 | opp_overlap 2466231 2466233 2466234, overlap 2466234 2466245 GGATGCTGCGAAACA GCCGGG AGT CCCGGG TTTTGGGGTTGGTGC Rru_A2125 2468585 - 2466930 - | glycosyltransferase TERM 2678 2468367 - 2468352 - G 83 -3.2 -5.24449 | GACAAAGGGAAAAAA CGGC GGTCGATA GCCG ATGCTCAAAGCCGGG Rru_A2126 2469660 - 2468818 - | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase TERM 2679 2469872 - 2469887 + G 82 -11.8 -4.08692 | opp_overlap 2469860 ACACGGTTTTCATCA CCGGCG CCAC CGCCGG TTTTGGCGAGGCTTG Rru_A2127 2469850 - 2470617 + | Serine 3-dehydrogenase TERM 2680 2470724 - 2470678 - g 71 -12.2 -3.28712 | gap 2, opp_overlap 2470680, overlap 2470679 CTCGCCTCTTCACAA CCGGCC-GCCGGGC-GACGGGC GCTTG GCCTGTCGGCCCGGCTGGCCTT TGCCGCTCTCGCCGG TERM 2681 2470723 - 2470679 - g 74 -15.7 -2.57132 | gap 2, opp_overlap 2470680, overlap 2470678 TCGCCTCTTCACAAC CGGCC-GCCGGGC-GACGGGC GCTTG GCCTGTCGGCCCGGCTGGCCT TTGCCGCTCTCGCCG TERM 2682 2470680 - 2470722 + G 100 -21.4 -3.59262 | gap 2, opp_overlap 2470679 2470678 CGCCTCTTCACAACC GGCC-GCCGGG-CGACGGGC GCTTG GCCTGTCGGCCCGGCTGGCC TTTGCCGCTCTCGCC Rru_A2128 2470645 - 2471568 + | LytR/AlgR family transcriptional regulator fumC 2471638 - 2473101 + | fumarate hydratase TERM 2683 2473389 - 2473415 + G 85 -7.9 -4.77036 | overlap 2473391 GCCGCCGGAATGGCC GCCCTCGCCGA AACCA TGGGCGAGGCC TTTTTGGTCATCAAG Rru_A2130 2473203 - 2473811 + | lysine exporter protein LysE/YggA TERM 2684 2474584 - 2474550 - T 75 -7.8 -4.2204 | gap 1, opp_overlap 2474562 AAGCGCAAGAAATAA CCGTGAGTCCCGGCG TGCCGC CGTCGGGT-TCACGG ACTGCGCTCGCGCTT TERM 2685 2474762 - 2474752 - T 72 -2.4 -4.8543 | CAATGCTTATAAAAA TCGG GAG CCGG CTCGTTTTGACTTGT Rru_A2131 2475743 - 2475492 - | hypothetical protein TERM 2686 2476502 - 2476468 - R 100 -23 -3.94746 | opp_overlap 2476465 TGATAGTGAAGCAAA TCGTCGTCGCGCTGTG GAC CAGAGCGCGACGACGA CAGTCTAATCAAAAA Rru_A2132 2477244 - 2476507 - | hypothetical protein TERM 2687 2476794 - 2476764 - G 81 -7.4 -4.62441 | CGTTATAGAAATAAA CCGGCGGCGGCGGT CGC ACGATCACCACCGG ATAGCCCGGCCGCGG Rru_A2133 2479488 - 2477446 - | glucosyltransferase MdoH TERM 2688 2477745 - 2477698 - G 75 -9.2 -4.10161 | gap 4, opp_overlap 2477709 GATGACGCGCGAAAA GCGCGATTCCGG-CGCCTCGGCCG TCGG CGGCCG-GGCGGCCAGA--CGCTC TTCCATGCGGGTCAG TERM 2689 2477953 - 2477929 - G 72 -5.7 -4.38927 | gap 1 CGCCCACAGAACAAA GGCGA-CGGC GGCTAT GCCGATCACC ATCACGTCCTTATAG TERM 2690 2479581 - 2479535 - R 87 -16.7 -3.01712 | gap 2, opp_overlap 2479537, overlap 2479521 GCCCGGCCGTTAATA GTCGGGGAGCGGTGTCGCGCCGA ACC CCGG-GCGACACCGCT-CCCAAT GTATCATCCACTATC TERM 2691 2479537 - 2479580 + r 88 -18.9 -2.94925 | gap 1, opp_overlap 2479521 2479535 CCGGCCGTTAATAGT CGGGGAGCGGTGTCGCGCCG AACCC CGG-GCGACACCGCTCCCAA TGTATCATCCACTAT TERM 2692 2479685 - 2479673 - R 78 -10.5 -3.99678 | ACCGTCAGAAGGAAA GCCCG GGG CGGGC AAGGAAGGTCACGGC Rru_A2134 2480141 - 2479662 - | hypothetical protein TERM 2693 2480067 - 2480039 - G 74 -5.1 -4.43877 | overlap 2480040 2480041 CAACCCGCAAATAAA GGGCGGCGCGC GACGCCA GCACGCCTTCC AATCCGCCCGATACC mdoG 2481917 - 2480331 - | glucan biosynthesis protein G TERM 2694 2481895 - 2481874 - G 73 -6.5 -4.38712 | gap 1, overlap 2481876 CTCATCCCCAGAAAA CCGCGCCGGT TCA ACAGGC-CGG CCCCCACGAAACCAC TERM 2695 2482044 - 2482030 - R 70 -4.2 -4.56597 | GCCGCCTTTTAAAAA GGCC GTCGACT GGCC CCTGGACCCCGTCGG Rru_A2136 2482911 - 2482339 - | hypothetical protein Rru_A2137 2483514 - 2482912 - | hypothetical protein TERM 2696 2483055 - 2483041 - G 82 -12.8 -3.96148 | opp_overlap 2483043 GGCGTTGACCAGAAA GCCGCC CAA GGCGGC CTCGGCGATTTCGGC Rru_A2138 2483726 - 2483511 - | hypothetical protein Rru_A2139 2483974 - 2483723 - | hypothetical protein TERM 2697 2484026 - 2484038 + H 80 -3.4 -5.03314 | opp_overlap 2484026 2484033 CCCTATCTCATTAAA TGTC AAATC GACA TTTTTTCGACCTAGA Rru_A2140 2484186 - 2484776 + | XRE family transcriptional regulator Rru_A2141 2485735 - 2484773 - | hypothetical protein TERM 2698 2485841 - 2485862 + H 79 -15.9 -2.81471 | overlap 2485833 2485843 2485845 GCCCCCATGGTATGG GACAGGGGG AAGA CCCCCTGTC TCTCATGGAATTGTC TERM 2699 2485843 - 2485860 + H 70 -12.7 -2.95223 | overlap 2485841 2485833 2485845 CCCCATGGTATGGGA CAGGGGG AAGA CCCCCTG TCTCTCATGGAATTG TERM 2700 2485939 - 2485995 + H 86 -15.1 -3.32727 | gap 3, overlap 2485956 2485969 ACGCCCTGGGCCTTG GCGCGCGCCCCCTGCCGGCCCGGGTGGC CTTC GCCGCCCCCGCCG--AGGGGGC-CGCCC TTACTCTGGTCTTCC TERM 2701 2487154 - 2487130 - g 80 -9.1 -4.18018 | GCGGGCGACGGAAAA GGTCGCGGCGC TGA GCACGGCGGCC GAGCGGATCGGCGAG Rru_A2142 2486210 - 2487667 + | chemotaxis sensory transducer TERM 2702 2487729 - 2487701 - T 89 -18.3 -3.12351 | CGCCCGCAGAGCGAA CCGCGTTAAAGGA CCC CCCTTTAACGCGG CGGCTCTAGCGGCGG Rru_A2143 2488501 - 2487755 - | methyltransferase Rru_A2144 2488860 - 2488624 - | hypothetical protein TERM 2703 2488952 - 2488926 - H 81 -4.2 -5.00884 | opp_overlap 2488928, overlap 2488927 2488928 ACGGGCGTGAAAAAA CCGCCGAGAGGC CTA GCCTCCCCGCTT TTCTTAAGATCACGC TERM 2704 2488928 - 2488950 + H 85 -9 -4.65916 | opp_overlap 2488927 2488926 2488928 GGGCGTGAAAAAACC GCCGAGAGGC CTA GCCTCCCCGC TTTTCTTAAGATCAC Rru_A2145 2489203 - 2489571 + | hypothetical protein TERM 2705 2490512 - 2490488 - g 80 -9.1 -4.18197 | ACGGGCGACGGAAAA GGTCGCGGCGC TGA GCACGGCGGCC GAGCGGATCGGCGAG Rru_A2146 2489568 - 2491025 + | methyl-accepting chemotaxis sensory transducer TERM 2706 2491099 - 2491042 - T 73 -13.7 -2.71712 | gap 2, opp_overlap 2491046, overlap 2491041 2491044 CCCGGCCCGCCAAAG GAGCGGTCTGAGAGCGGGAGGCGTAAA ATCGGG TTCACGCCCCCCGCTCT-AAAC-GTTC ACTCTCGGGGCGTTG TERM 2707 2491149 - 2491125 - T 95 -12.7 -4.15044 | CGTTGGTCTAATAAA GGCCGCCCGCC TGG GGCGGGGCGCC ACCGGCGCCGAAGCC Rru_A2147 2493612 - 2491117 - | penicillin-binding protein 1A TERM 2708 2493172 - 2493151 - G 72 -8.7 -4.08767 | gap 1, opp_overlap 2493170 GTGATCCTTGGAAAA GGCCTCCTCG ATG CG-GAAGGCC AAGATGGCTTCCTTG TERM 2709 2493765 - 2493788 + r 76 -15.2 -2.63702 | overlap 2493768 TCTCGTCGACCGGTT CCCCGCCCCG CTCT CGGTGCGGGG CGTTTTCTTGCCTGC TERM 2710 2493768 - 2493790 + r 100 -16.2 -4.67982 | overlap 2493765 CGTCGACCGGTTCCC CGCCCCGCTC TCG GTGCGGGGCG TTTTCTTGCCTGCGG Rru_A2148 2495455 - 2493887 - | N-acetylmuramoyl-L-alanine amidase TERM 2711 2496112 - 2496083 - H 80 -11.4 -3.71848 | CTCCGGCATCAAGAA GGCCCGCCGATC CCATCT GATCGACCGGCC ACCCGTGGCGAAAAG TERM 2712 2497976 - 2497920 - g 72 -8.4 -4.16251 | gap 1, overlap 2497911 AGAGAACGGCCAAAA CGGCGCCGATGCCGATGGACAGGGCCG CAAG CGCCGCCG-CCGTCGCCGCCGTCGCCG CAAGGATCAGGACGG TERM 2713 2498745 - 2498778 + G 70 -13 -3.01712 | opp_overlap 2498735 CAAGACCCCCGACCC CGCGGCCGCCGCCG CCCCGC CGGCCGCGGTCCCG TCTTCCGACCAACCC Rru_A2149 2496163 - 2498832 + | RNAse E TERM 2714 2498870 - 2498895 + F 100 -20.5 -4.4078 | TCACCCGATGACGGA GGGGGACCGGA GCAA TCCGGTCCCCC TTTTAGTTGACGGCC TERM 2715 2499174 - 2499188 + G 77 -5.6 -4.58395 | overlap 2499167 CCCTTCTTGCGGGCA TCCCCC TTT GGCGGA TTTTTCCCCGCTGCG Rru_A2150 2499015 - 2499413 + | hypothetical protein TERM 2716 2499451 - 2499468 + T 100 -14.1 -4.19258 | opp_overlap 2499451 CCCCCCATGCAAAAA GGCCCGC TTGC GCGGGCC TTTTCGCTGCGATCT TERM 2717 2499468 - 2499451 - T 100 -14.1 -4.65895 | opp_overlap 2499451 CCCCCCATGCAAAAA GGCCCGC TTGC GCGGGCC TTTTCGCTGCGATCT TERM 2718 2500004 - 2500021 + T 100 -14.1 -4.19258 | opp_overlap 2500004 CCCCCCATGCAAAAA GGCCCGC TTGC GCGGGCC TTTTCGCTGCGATCT TERM 2719 2500021 - 2500004 - T 100 -14.1 -4.65895 | opp_overlap 2500004 CCCCCCATGCAAAAA GGCCCGC TTGC GCGGGCC TTTTCGCTGCGATCT rpsI 2500529 - 2500053 - | 30S ribosomal protein S9 rplM 2500997 - 2500533 - | 50S ribosomal protein L13 TERM 2720 2500944 - 2500928 - G 75 -13.7 -3.31248 | opp_overlap 2500918 2500917 CAAGACGCCCGAGAA CGACGCC TTC GGCGTCG ATCACGTACCATTTC TERM 2721 2501342 - 2501300 - R 100 -15.5 -4.56597 | gap 1, overlap 2501305 TTTGGGCGCTAAAAA GCCAACGGCCAGGA-GGCGC CGTG GCGCCATCCTGGCCGAAGGG AAAAGAGCGGAGACT TERM 2722 2501337 - 2501305 - R 100 -21.4 -3.45031 | gap 1, overlap 2501300 GCGCTAAAAAGCCAA CGGCCAGGA-GGCGC CGTG GCGCCATCCTGGCCG AAGGGAAAAGAGCGG TERM 2723 2501382 - 2501366 - R 78 -10.8 -3.94746 | GGAGACTTAAGCAAA CGGCGG GAACG CCGCCG ACCGTCAGCGCAAGG Rru_A2153 2502217 - 2501387 - | TonB-like TERM 2724 2502193 - 2502165 - G 76 -14.5 -3.11291 | overlap 2502157 GCGACAACGCCAAGA TGGAGCGCCGCCG ATC CGGCGATGCCCCA AGTCCGCCCCGAAGG Rru_A2154 2502681 - 2502214 - | biopolymer transport protein ExbD/TolR TERM 2725 2502592 - 2502616 + g 78 -15.1 -3.2614 | opp_overlap 2502579 2502577 2502576, overlap 2502601 2502603 GATCAGCAGCACCAG CATCACGTCGA CCA TCGGCGTGATG TTGATCTCGGCGATC Rru_A2155 2503571 - 2502681 - | MotA/TolQ/ExbB proton channel TERM 2726 2503842 - 2503805 - H 70 -10.6 -3.53091 | overlap 2503806 ATTGCGTTCCCCAAA CCCGGATC-GCGCCCCGA CGGA CCGGGGTGCCGATC-GGG CCCGCGGACAAGGGG TERM 2727 2503995 - 2503958 - H 70 -9.8 -3.45032 | gap 1, overlap 2503960 GAACAATATCGACAA CACGGCTCCGGCCAGGA TTTCC CCCTGGCCG-ACCCGGG CGCAAGGATCGGACA TERM 2728 2503993 - 2503960 - H 72 -11 -3.28582 | gap 1, overlap 2503958 ACAATATCGACAACA CGGCTCCGGCCAGGA TTTCC CCCTGGCCG-ACCCG GGCGCAAGGATCGGA Rru_A2156 2504014 - 2504799 + | enoyl-CoA hydratase Rru_A2157 2504796 - 2505389 + | CHAP TERM 2729 2505393 - 2505423 + T 70 -3.8 -4.72007 | opp_overlap 2505393 2505396 2505400 2505414, overlap 2505414 GCCTCTCGCTAGAGA TCACGAACGCTGCG GAC CACAGGGCTCGGGA TTTGTTTTAATGCCG Rru_A2158 2506965 - 2505430 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2730 2505526 - 2505552 + g 74 -5.8 -4.56597 | gap 1, opp_overlap 2505515 2505495, overlap 2505527 AATATTGCCGCCGCA GGCGCCGATCG CCCGCT CGA-CGGCGCG TTTTTCCACAACCCA TERM 2731 2507090 - 2507106 + H 80 -10.8 -4.00532 | GGGTTATCCGCGTTT GGGGCG CCTGT CGCCCC TTTGATCTTTCAGGA Rru_A2159 2507131 - 2507874 + | creatininase TERM 2732 2507925 - 2507877 - T 79 -8.7 -4.17089 | gap 2, overlap 2507869 2507868 2507878 CCTAAAGGGCTAAAA GCCGCCCGATCGGCCGCGCCGGC CTTAC GCCTGCGCGGCCGG--GGGCAAG AGGGCGAGTTTGGGC TERM 2733 2507924 - 2507878 - T 72 -12.2 -3.09772 | gap 2, overlap 2507869 2507868 2507877 CTAAAGGGCTAAAAG CCGCCCGATCGGCCGCGCCGGC CTTAC GCCTGCGCGGCCGG--GGGCAA GAGGGCGAGTTTGGG Rru_A2160 2509430 - 2507901 - | Ppx/GppA phosphatase TERM 2734 2509245 - 2509283 + g 85 -5.9 -4.8622 | overlap 2509250 TTCGGGATTGAGCAC GCCGGTCT-CGCCCAGGCC CTT GCCCAGGGCGCAGG-TGGC TTTTTCGTTGAACAG Rru_A2161 2511735 - 2509471 - | polyphosphate kinase TERM 2735 2511376 - 2511397 + g 72 -11.6 -3.61398 | CAGCTGCTGGGCCGG GGTCAGCC CATCCT GGCTGACC TTGTTCACCCCGGCC TERM 2736 2511723 - 2511749 + g 84 -5.8 -4.87291 | overlap 2511727 CGGCGGGGGGCGGCG GAGCGGAGGTCA TGC TGGCTTCCCTTC TTTTTCCTTGAGATG Rru_A2162 2511878 - 2512390 + | phosphohistidine phosphatase, SixA Rru_A2163 2513051 - 2512365 - | regulatory inactivation of DnaA Hda protein Rru_A2164 2514157 - 2513048 - | hypothetical protein Rru_A2165 2514777 - 2514154 - | CDP-alcohol phosphatidyltransferase TERM 2737 2514833 - 2514801 - R 100 -17 -3.75153 | gap 1 CGCCCTCAATTCAAA CCCGGG-GTGGCGCC GACC GGCGCCAGTCCCGGG GTCGCCCCACCCATG Rru_A2166 2516128 - 2514791 - | hypothetical protein Rru_A2167 2516259 - 2517425 + | phosphoribosylformylglycinamidine cyclo-ligase Rru_A2168 2517422 - 2518096 + | phosphoribosylglycinamide formyltransferase TERM 2738 2518143 - 2518114 - T 100 -20.1 -4.07568 | opp_overlap 2518119, overlap 2518119 GCCGGCGGCCCAAAA CAAAACCCGCCCC TTTC GGGGCGGGTTTCG CAGTGACACAAATCG TERM 2739 2518119 - 2518138 + T 93 -16.4 -3.57144 | opp_overlap 2518119 2518114 CGGCCCAAAACAAAA CCCGCCCC TTTC GGGGCGGG TTTCGCAGTGACACA TERM 2740 2518138 - 2518119 - T 100 -16.4 -5.07652 | opp_overlap 2518119, overlap 2518114 CGGCCCAAAACAAAA CCCGCCCC TTTC GGGGCGGG TTTCGCAGTGACACA Rru_A2169 2518618 - 2518196 - | nucleoside diphosphate kinase TERM 2741 2518759 - 2518733 - H 84 -11.5 -4.13767 | gap 1, opp_overlap 2518740, overlap 2518735 CCGGTGACTGGAAAA CAGGCTCCGCCG GCCA CGGCGG-GCCGG CCATCGGAGCGGGCG TERM 2742 2518757 - 2518735 - H 82 -12.7 -3.6692 | gap 1, opp_overlap 2518740, overlap 2518733 GGTGACTGGAAAACA GGCTCCGCCG GCCA CGGCGG-GCC GGCCATCGGAGCGGG TERM 2743 2518999 - 2518952 - H 100 -15.5 -4.57569 | opp_overlap 2518951 2518950 2518948 CGACTTTCTTAAAAA GACGCGCGGCGGCGCGTCCCT CTCTAT AGAAACGCGCGGTGGCGCGTC GGTGTTTAGGATCGC TERM 2744 2519462 - 2519497 + G 76 -8.3 -4.17048 | gap 3, overlap 2519460 GTCGGCGAATTCTCC GGCGGCTGGCGCA-TGCG CGT CGCCCTG-GCC-GCCGCC TTGTTTTCCCGCCCG Rru_A2170 2519018 - 2520955 + | ABC transporter component TERM 2745 2522228 - 2522262 + G 70 -4 -4.55287 | overlap 2522232 2522246 CGGTCCGATGGATTT CGACGCCAAGGGCGAT CTG ACCGCCCCGGCCTTCG TTTTCTATCAGTGGA Rru_A2171 2521197 - 2522309 + | extracellular ligand-binding receptor TERM 2746 2522365 - 2522338 - T 100 -15.5 -4.04206 | opp_overlap 2522338, overlap 2522312 TTACGGTCACAGAAA GGCCCCGTCGG CGCGAT CCGGCGGGGCC TTTTCTTTAACTGGT TERM 2747 2522338 - 2522365 + T 100 -17.7 -4.9138 | opp_overlap 2522312 2522338 TTACGGTCACAGAAA GGCCCCGTCGG CGCGAT CCGGCGGGGCC TTTTCTTTAACTGGT Rru_A2172 2523420 - 2522383 - | hypothetical protein TERM 2748 2523124 - 2523114 - G 70 -8.2 -3.99324 | overlap 2523115 CGCGATGACGATAAA CGCC ATA GGCG AAAAACGCCCCGGCG TERM 2749 2523148 - 2523130 - G 100 -13.8 -4.64766 | overlap 2523115 GCCATAGGCGAAAAA CGCCCCGG CGG CCAGGGCG AAGCCGAGGAAGCGC Rru_A2173 2524906 - 2523497 - | leucyl aminopeptidase Rru_A2174 2525940 - 2524960 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like Rru_A2175 2526971 - 2525937 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 2750 2526312 - 2526287 - G 75 -6.7 -4.34345 | overlap 2526289 CATACATCACCAAAA CCCGGTCGGCG ACCT CGGCGACCACG CCCAGATCATGGGTG TERM 2751 2526575 - 2526597 + g 82 -16.2 -3.28924 | CCAGCGCCTTGTCGC GGGCGGCGCG GCG CGAGCCGCCC TTATGGGCCAGGATC Rru_A2176 2527935 - 2526961 - | binding-protein dependent transport system inner membrane protein Rru_A2177 2529032 - 2527941 - | binding-protein dependent transport system inner membrane protein TERM 2752 2528958 - 2528939 - G 77 -16.4 -2.52464 | opp_overlap 2528939 GCGGTTCGGAAGTGA GGGGGGGC GCCC GCCCCCCC TTGTCGTCTGGTTGG TERM 2753 2528939 - 2528958 + g 86 -16.4 -3.49858 | opp_overlap 2528939 GCGGTTCGGAAGTGA GGGGGGGC GCCC GCCCCCCC TTGTCGTCTGGTTGG Rru_A2178 2530714 - 2529029 - | extracellular solute-binding protein TERM 2754 2530889 - 2530875 - H 85 -5.7 -5.13016 | opp_overlap 2530874 AAGCAAAACTAAAAA GGGAA AGATA TTCCC ACTATTCTTTTAAAG Rru_A2179 2531057 - 2531776 + | LuxR family transcriptional regulator Rru_A2180 2531866 - 2532765 + | peptidase S33, tricorn interacting factor 1 TERM 2755 2532799 - 2532824 + T 100 -21.9 -4.77438 | opp_overlap 2532799 GCCTAATCGCGCAAA GGGCGGGACCG CTGC CGGTCCCGCCC TTTTTCGTAATCAAT TERM 2756 2532824 - 2532799 - T 100 -21.9 -3.57561 | opp_overlap 2532799 GCCTAATCGCGCAAA GGGCGGGACCG CTGC CGGTCCCGCCC TTTTTCGTAATCAAT TERM 2757 2532858 - 2532839 - T 76 -12.2 -3.33696 | opp_overlap 2532838 CTTTTTCGTAATCAA TGACCGCT CTCA AGCGGTCA GTTCATCGCCTGGAC Rru_A2181 2534250 - 2532856 - | NAD(P) transhydrogenase, beta subunit Rru_A2182 2534683 - 2534264 - | NAD(P)(+) transhydrogenase (AB-specific) Rru_A2183 2535841 - 2534687 - | NAD(P)(+) transhydrogenase (AB-specific) TERM 2758 2535344 - 2535311 - G 77 -13.1 -3.60296 | gap 1 GACGCCGACGCCAAA CACCAGCACGCGGGCC GGC GGCACG-GTGCCGGCG GCGGTCATCATCATC TERM 2759 2535402 - 2535384 - G 70 -11.7 -3.41878 | CGGGCGAATTCATAA GCGCCGT CGATC ACGGCGC GATAGCCCGCGAGGT Rru_A2184 2536699 - 2536082 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Rru_A2185 2540419 - 2536913 - | indolepyruvate ferredoxin oxidoreductase TERM 2760 2537871 - 2537841 - G 100 -11.9 -5.1675 | gap 1, overlap 2537842 GCATCGAGGAAAAAA GCGCGGCGCGTG GTGGCGCT CA-GCGCCGCGC GCACCTCGGCCTCGG TERM 2761 2537879 - 2537842 - G 73 -11.1 -3.69327 | gap 1, overlap 2537841 CATCGAGGAAAAAAG CGCGGCGCGTGGTGGCGC TCA GCGCCGCG-CGCACCTCG GCCTCGGGATAGCGG TERM 2762 2538511 - 2538499 - G 85 -6.2 -4.88736 | overlap 2538500 GATCATTGATAAAAA CCCG GCGAT CGGG ATCGGCCAGCAGCCC TERM 2763 2540989 - 2541021 + H 84 -16.9 -2.78384 | AGCGCTGCCAGGATG GCCCCTTAGGGCGGC GTA GCCGACCGGAGGGGC TGTCCTGGCGGGGGC Rru_A2186 2541070 - 2541345 + | putative transposase Rru_A2187 2542799 - 2541462 - | Serine/threonine protein kinase TERM 2764 2541605 - 2541615 + g 70 -2.6 -4.62708 | opp_overlap 2541599 2541605, overlap 2541594 TATCTATAATATATA TTAT ATC ATAA TTGTTTTTATGTCTT TERM 2765 2542711 - 2542724 + g 95 -3.9 -5.62219 | overlap 2542687 CGATCTTCTGTGCTC GTATT GCGT AATAC TTTTTTTACTGTCTT Rru_A2188 2543178 - 2543116 - | hypothetical protein Rru_A2189 2543534 - 2543364 - | TRm3 transposase Rru_A2190 2543964 - 2543686 - | TRm3 transposase Rru_A2191 2545933 - 2544116 - | AMP-dependent synthetase and ligase TERM 2766 2547316 - 2547340 + G 70 -11.3 -3.54741 | GTCGGATACGCCGCT GACCCTGGCCG AGA CGGCCTCGGTC TTTGGCGAGATGCTG Rru_A2192 2546081 - 2547874 + | peptidase M3B, oligoendopeptidase-related clade 3 TERM 2767 2547932 - 2547889 - f 86 -14 -3.53091 | gap 1, opp_overlap 2547889 2547894, overlap 2547894 AGCCCCCTCCCTAAA GCAAATCCCCG-AGCGATCTG GAC CAGATCGCGACGACGATTTGC TTCGATATCAGCATT TERM 2768 2548014 - 2547993 - f 100 -17.3 -3.5525 | ACATACCGCTCTAAA GGCGGTGGC ATCA GCCACCGCC TTGGCCGTAACGGGA TERM 2769 2548340 - 2548325 - g 72 -11.8 -3.53012 | TGGCCCTTCGTCAAA CGGCGG ATGA CCGCCG AACTGGGTCCCAACT TERM 2770 2549359 - 2549397 + G 100 -11.7 -5.14563 | gap 1, overlap 2549360 CGAAGCCCTGACCGG CGTCGGCCTCGTGCCCAG TGAC CTGGGCGTG-GGCTGACC TTTTTTCATCCCGGG TERM 2771 2549360 - 2549396 + G 83 -15.2 -3.68256 | gap 1, overlap 2549359 GAAGCCCTGACCGGC GTCGGCCTCGTGCCCAG TGAC CTGGGCGTG-GGCTGAC CTTTTTTCATCCCGG Rru_A2193 2548037 - 2549395 + | Abc1 protein TERM 2772 2549459 - 2549471 + G 83 -4.7 -5.06414 | opp_overlap 2549439 2549451, overlap 2549453 2549460 CAGCAGACCCCGCTC CCCCG GGC CGGGC TTTTTCTTGAAGACC Rru_A2194 2549426 - 2549905 + | MaoC-like dehydratase TERM 2773 2549897 - 2549947 + T 100 -14 -4.54343 | overlap 2549898 GTGGTGGTCTTCCGC CGGCCTTAGGGTCTGTCCGCTTGA TGC TGAAGCGGACAGACCCTGGATCCC TTTGTTTGAGTTTGT TERM 2774 2549898 - 2549946 + T 93 -17.5 -3.30979 | overlap 2549897 TGGTGGTCTTCCGCC GGCCTTAGGGTCTGTCCGCTTGA TGC TGAAGCGGACAGACCCTGGATCC CTTTGTTTGAGTTTG TERM 2775 2550050 - 2550088 + T 100 -18.1 -3.65812 | overlap 2550051 TTCACTACTCCAAGC TTCCGCCAGCCCTGCCC GACAA GGGGGGGGCTGGCGGAC TTCTGTTGGACCGGA TERM 2776 2550051 - 2550087 + T 100 -21.6 -2.79273 | overlap 2550050 TCACTACTCCAAGCT TCCGCCAGCCCTGCCC GACAA GGGGGGGGCTGGCGGA CTTCTGTTGGACCGG TERM 2777 2550107 - 2550120 + T 100 -5.2 -5.82388 | TGTTGGACCGGAGGG CGCC GGTCTG GGCG TTTTTTTTCAGCTTT Rru_A2195 2550607 - 2550128 - | bacterioferritin Rru_A2196 2550985 - 2550773 - | BFD-like (2Fe-2S)-binding region Rru_A2197 2551477 - 2552121 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 2778 2552176 - 2552227 + T 90 -18.1 -3.21099 | overlap 2552161 2552177 GGCGCCGCCGCCGGT TTTCCTAGAGCGGTGAGCGGGGA CTAGAT TTCACGCTCACCGCTCTAGGACC TTGATAGTCAAGCAA TERM 2779 2552177 - 2552226 + T 100 -21.6 -2.52516 | overlap 2552161 2552176 GCGCCGCCGCCGGTT TTCCTAGAGCGGTGAGCGGGGA CTAGAT TTCACGCTCACCGCTCTAGGAC CTTGATAGTCAAGCA TERM 2780 2552273 - 2552248 - T 88 -13.3 -3.6187 | gap 1, opp_overlap 2552244, overlap 2552244 AGTCAAGCAAATCAA CGCCGCGCCCTG GTT CAGAGCGCG-CG GAATTGGCTTTAGGG Rru_A2198 2552774 - 2552283 - | hypothetical protein TERM 2781 2552761 - 2552740 - G 75 -11.5 -3.65902 | opp_overlap 2552739, overlap 2552741 GTGACGGGATCGAAA TCGAGGGCG ATTT CGCCCTCGC GTCTGTCGTCCATGG TERM 2782 2552760 - 2552741 - G 72 -15 -2.79327 | opp_overlap 2552739, overlap 2552740 TGACGGGATCGAAAT CGAGGGCG ATTT CGCCCTCG CGTCTGTCGTCCATG Rru_A2199 2554577 - 2552871 - | hypothetical protein TERM 2783 2554723 - 2554748 + r 81 -8.1 -4.63218 | overlap 2554725 TTTAGCTTTTAGACG GTCCCGGATCG GCGG CGGCCCGGGCC TTTTCTTCCCAGCCC Rru_A2200 2555191 - 2554709 - | DNA polymerase III subunit chi TERM 2784 2555197 - 2555183 - G 76 -8.5 -4.18644 | opp_overlap 2555182 ATGATAGAAATCAAA GCGGC TCATC GCCGC AGTTTATCCCAGGCG TERM 2785 2555265 - 2555236 - R 100 -18.6 -5.4756 | opp_overlap 2555234 2555233 AACGGGAACAAAAAA GCGCCGGCTCCC TGGTGG GGGAACCGGCGC CCGTTCTCCGGGAAA Rru_A2201 2556819 - 2555293 - | peptidase S1C, Do TERM 2786 2557142 - 2557101 - R 80 -15.1 -3.01712 | opp_overlap 2557095 2557104 2557107 TTTTCCGGCCGAAGA CGCCAACGGCGGCCCGAAC CCTG GTTCGAACCGCCGTCGTCT GATCGTTTCGCGTGC TERM 2787 2557104 - 2557139 + r 75 -13.2 -2.8934 | opp_overlap 2557101, overlap 2557095 2557107 TCCGGCCGAAGACGC CAACGGCGGCCCGAAC CCTG GTTCGAACCGCCGTCG TCTGATCGTTTCGCG TERM 2788 2557107 - 2557136 + r 73 -13.5 -2.69202 | opp_overlap 2557101, overlap 2557104 2557095 GGCCGAAGACGCCAA CGGCGGCCCGAAC CCTG GTTCGAACCGCCG TCGTCTGATCGTTTC Rru_A2202 2558054 - 2557173 - | hypothetical protein Rru_A2203 2559274 - 2558051 - | HflK TERM 2789 2559808 - 2559775 - g 75 -2.9 -4.84359 | gap 1, overlap 2559776 2559777 CCAGGCGGAGAAAAA GCCGCAGCC-GGGCGC CGG GGGCCATGGCCACGCC ACGTCGCAGGCCCGC Rru_A2204 2559473 - 2560621 + | hypothetical protein TERM 2790 2561022 - 2561004 - f 81 -13.8 -3.29511 | opp_overlap 2561004 CCCACTTCCCTACAA GGCGGCCC GAC AGGCCGCC TTTTGTTTGAACGGC TERM 2791 2561004 - 2561022 + F 100 -13.1 -4.86731 | opp_overlap 2561004 CCCACTTCCCTACAA GGCGGCC CGACA GGCCGCC TTTTGTTTGAACGGC Rru_A2205 2561126 - 2561716 + | hypothetical protein TERM 2792 2561877 - 2561844 - f 76 -10.1 -3.72324 | overlap 2561845 CACGCCCATGAATAA GGGGTGGGGCATGGC GAAC GTCCCGCCCCACCCA CCAAGGCCCATCCAA TERM 2793 2561876 - 2561845 - f 73 -13.6 -2.83073 | overlap 2561844 ACGCCCATGAATAAG GGGTGGGGCATGGC GAAC GTCCCGCCCCACCC ACCAAGGCCCATCCA Rru_A2206 2561938 - 2563584 + | fumarase Rru_A2207 2563659 - 2564024 + | hypothetical protein Rru_A2208 2564197 - 2564457 + | hypothetical protein TERM 2794 2564482 - 2564520 + T 70 -10.8 -3.53224 | opp_overlap 2564476 GCCGATAACGCTCGC GCCCGGGCTCACGTCGTC CCT GTCGGCTTGAGCACGCGC TTTGCCCCCGCCCTC TERM 2795 2564580 - 2564551 - T 100 -10.1 -4.93877 | gap 1, opp_overlap 2564550 2564576, overlap 2564570 GGCGATCAAAGAAAA TCCCCAGCGATCTG AAC CAGATCGC-GAAGA CGATTTTCTTGGCTA Rru_A2209 2567877 - 2564644 - | AsmA TERM 2796 2565503 - 2565460 - G 70 -11.7 -3.46534 | gap 2, overlap 2565458 CAAGGGCAGCAAAGA GGGCGGCGCGACACTGCCGCC GCCC AGCATCAG-GCCG-GCCGCCC GAACCGCCCTCGGCC TERM 2797 2565818 - 2565772 - G 75 -13.1 -3.36289 | gap 2, overlap 2565796 GACCATGGCAAGGAA CGACGCC--GCATCGGGATGGGC AAA GCCGATCCCCATGCTCAGCGTCG GAACGCCGGCAAAGG TERM 2798 2567196 - 2567172 - G 73 -4.2 -4.62069 | gap 1, opp_overlap 2567151 2567173 2567178, overlap 2567151 2567173 2567176 CGGTCAGTTCAAAAA CCGAGGGCTGG TTCT CAAGCCC-CAG CTTTATGCCGACCTG TERM 2799 2567951 - 2567907 - R 88 -3.4 -5.45652 | overlap 2567908 2567910 ATCGTTAAGAAAAAA GGAGCGGACCCTCTGCGATA AAGCG TACCTCACAGGGTCCGCGGG AAGTCGAGTGGTGGA TERM 2800 2567948 - 2567910 - R 86 -13.9 -3.5087 | overlap 2567908 2567907 GTTAAGAAAAAAGGA GCGGACCCTCTGCGATA AAGCG TACCTCACAGGGTCCGC GGGAAGTCGAGTGGT Rru_A2210 2568606 - 2568031 - | phosphoglycerate/bisphosphoglycerate mutase TERM 2801 2568778 - 2568759 - R 100 -15 -4.4261 | CCCGCAATAGCAAAA GGGCGGTC CGAA GACCGCCC CCCGCCAAACAAAAC TERM 2802 2568825 - 2568793 - R 74 -3.5 -4.86731 | gap 2 CCCCGCCAAACAAAA CGTCTTGGTTCGTTC GATTA GAACG--CCAGGACG ATACCGGTGACGGCG Rru_A2211 2569898 - 2568810 - | porin TERM 2803 2570072 - 2570045 - R 100 -18.4 -4.27316 | CGTCGGAATGGAAAA GGGGGCGGCCCC CGCA AGGACCGCCCCC CACCCTCAAACCCAC Rru_A2212 2571146 - 2570100 - | hypothetical protein TERM 2804 2570126 - 2570169 + g 75 -13.8 -3.31144 | gap 1, opp_overlap 2570106 2570119 2570107 GCACGATACCGGTGA CGGCGCCAACGCCTTCGCGCG AGC CG-GCGGCGGTGTTGGAGTCG TTCTCACCGTAGAAG Rru_A2213 2573272 - 2571302 - | sulfotransferase TERM 2805 2572053 - 2572039 - G 75 -7 -4.30576 | overlap 2572041 GGCCGACCACCAAAA CCGGCG TCT CGCTGG GCGACCCCAGGCCGG TERM 2806 2572691 - 2572669 - G 77 -6.9 -4.48987 | opp_overlap 2572682, overlap 2572672 CGTTCAGAACCAAAA CATCGCCCG GGGCG CGGGCCACG CAGTCTTCCCAGGCA TERM 2807 2573082 - 2573068 - G 75 -4.9 -4.68384 | overlap 2573069 2573070 ACCCACGCAACAAAA GCGCC TCGGC GGCAC GCGGCCGCAGGGCCA Rru_A2214 2574268 - 2573342 - | LysR family transcriptional regulator Rru_A2215 2575218 - 2574265 - | LysR family transcriptional regulator Rru_A2216 2575364 - 2575714 + | hypothetical protein TERM 2808 2576056 - 2576092 + G 81 -15 -3.61715 | opp_overlap 2576048 2576053 2576052 2576075 2576077, overlap 2576058 GGACAGACTAAGCCG ATGCGGCCTGCTGCCC AAACA GGGCAGCCGGCCGCTG TTCTTCCAGGCCCTG TERM 2809 2576058 - 2576090 + G 100 -22 -3.38812 | opp_overlap 2576048 2576053 2576052 2576075 2576077, overlap 2576056 ACAGACTAAGCCGAT GCGGCCTGCTGCCC AAACA GGGCAGCCGGCCGC TGTTCTTCCAGGCCC Rru_A2217 2575844 - 2576596 + | hypothetical protein Rru_A2218 2576756 - 2577562 + | short chain dehydrogenase TERM 2810 2578100 - 2578086 - g 70 -2.1 -4.65895 | overlap 2578087 GTGCGGATCGAAAAA CTCGA CGTTT TCGAA GATACCCACTCTGTT Rru_A2219 2577732 - 2578151 + | dihydroneopterin aldolase family protein TERM 2811 2578314 - 2578304 - f 70 -4 -4.67038 | GTCGCAAAACGAAAA CAAT CTT ATTG AGTAAATTCAGTATG TERM 2812 2578363 - 2578351 - f 81 -4.8 -5.00616 | overlap 2578336 2578337 TGTCTGCCTAAAAAA CAGG CAGCC CCTG TAGACCTCCGGGTTT TERM 2813 2579386 - 2579407 + G 71 -2.9 -4.65895 | overlap 2579389 CCATCAGGCCGGCGG CCAGACCTG CGTC CAGGTCTTC TTTTTCCGTGGCGGC TERM 2814 2579389 - 2579404 + G 84 -9 -4.44608 | overlap 2579386 TCAGGCCGGCGGCCA GACCTG CGTC CAGGTC TTCTTTTTCCGTGGC uvrC 2578520 - 2580439 + | excinuclease ABC subunit C Rru_A2221 2580511 - 2581104 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Rru_A2222 2581148 - 2582434 + | molybdopterin molybdochelatase TERM 2815 2582478 - 2582437 - T 100 -22.3 -4.08216 | CGAGCTGTTTTAAAA GCCAAACCCCCGGCCGC TTCTTCTC GCGGCCGGGGGCTGGGC CCGTCAGGCCGCCGA TERM 2816 2582500 - 2582512 + T 70 -10.5 -3.4252 | overlap 2582481 GGCCGCCGAAGCGGA GGCGG AGG CCGCC TTGTCGTGGGTCCGC Rru_A2223 2583393 - 2582482 - | branched-chain amino acid aminotransferase TERM 2817 2583621 - 2583634 + G 77 -3.7 -4.82901 | GAGCGAGGTCAAATC GGGCG TGAA CCCCC TTTTTCTGCGCGAGG Rru_A2224 2583604 - 2584143 + | MarR family transcriptional regulator TERM 2818 2584597 - 2584611 + G 72 -7 -4.18018 | overlap 2584587 CCGAGGGCCCCTTGC CGCTGG GAG CCTGCG TTTTCGATCCGCACC Rru_A2225 2584140 - 2584880 + | two component transcriptional regulator Rru_A2226 2584937 - 2586343 + | periplasmic sensor Signal transduction histidine kinase Rru_A2227 2586494 - 2587024 + | GCN5-related N-acetyltransferase Rru_A2228 2588706 - 2587054 - | response regulator receiver modulated diguanylate cyclase TERM 2819 2588338 - 2588309 - G 74 -12.7 -3.54424 | overlap 2588310 GGCGAGCCGGCCAAA CCCGGCGCCGGCG TCAT CGCCGCCGCCAGC AGATCGGAGCCGCCG TERM 2820 2588337 - 2588310 - G 77 -16.2 -2.72511 | overlap 2588309 GCGAGCCGGCCAAAC CCGGCGCCGGCG TCAT CGCCGCCGCCAG CAGATCGGAGCCGCC Rru_A2229 2589092 - 2588703 - | response regulator receiver domain-containing protein TERM 2821 2589282 - 2589270 - H 71 -9.1 -3.83816 | AGAAAGGAAGGCAAA TCCGC GTC GCGGA TCCTCGCCAGGGCAT TERM 2822 2590044 - 2590071 + G 77 -12.6 -3.7282 | GCGGTGGTGGCCGGT CCGGATGAGCGG ACGG CCGCCCAACCGG TTCTTGATGCCCTGC Rru_A2230 2589471 - 2590463 + | glycosyl transferase family protein Rru_A2231 2591221 - 2590454 - | glycosyl transferase family protein TERM 2823 2590892 - 2590870 - G 74 -12.7 -3.56092 | gap 1, overlap 2590854 GCACCACCTGCCAAA GGCG-CGCCG CCGG CGGCGTCGCC ATCAGGGCGTCGAGG TERM 2824 2591374 - 2591427 + r 100 -10.2 -5.63103 | gap 1, opp_overlap 2591374 CTCTTCATGAAAAAA CCGGCACTCACCTTGATCCGCCACG CGAGA CGAG-CGGAGAAAGAGGAGTGCCGG TTTTTTTCGTTGCCC TERM 2825 2591427 - 2591374 - R 100 -15.3 -5.14563 | gap 1, opp_overlap 2591374 CTCTTCATGAAAAAA CCGGCACTCACCTTGATCCGCCACGC GAG ACG-AGCGGAGAAAGAGGAGTGCCGG TTTTTTTCGTTGCCC Rru_A2232 2592146 - 2591508 - | two component LuxR family transcriptional regulator TERM 2826 2592141 - 2592153 + g 71 -9.1 -3.83724 | opp_overlap 2592140 2592141, overlap 2592140 GTCTACAATCATAAC GCGCA TGG TGCGC TTTCCCTTCTCTGCT TERM 2827 2592298 - 2592275 - H 100 -10.2 -5.02074 | CCAGCCTGGAAAAAA GCCACACCCG AGTC CGAGTGGGGC CGGCTGGCAACAACC TERM 2828 2592582 - 2592605 + H 83 -3 -5.26316 | opp_overlap 2592573, overlap 2592584 ATCACACCCCCATCC CTCCGGGG GGTACCGA TCCCGGCG TTTTTTGTGCCATCC Rru_A2233 2592759 - 2593214 + | transcriptional regulatory protein TERM 2829 2593317 - 2593275 - T 86 -12.9 -3.86822 | gap 2, opp_overlap 2593280 2593280, overlap 2593280 CAACGTGCCGACAAA GCAAATC-CCG-CGCGGTCTG CAG CAGACTGCGGCGATGATTTGC GACGATTTTCTTGGT TERM 2830 2593345 - 2593392 + T 100 -18.5 -3.7941 | opp_overlap 2593341, overlap 2593346 GGTTCTCAAGATGTT AGAGCGGCGAGTGGAAAAGCC AATTCC GGTTTTTCCGCTCGCCGCCCG TTCTTATCGGCCGTC TERM 2831 2593346 - 2593391 + T 100 -22 -2.87325 | opp_overlap 2593341, overlap 2593345 GTTCTCAAGATGTTA GAGCGGCGAGTGGAAAAGCC AATTCC GGTTTTTCCGCTCGCCGCCC GTTCTTATCGGCCGT Rru_A2234 2593833 - 2593441 - | response regulator receiver domain-containing protein Rru_A2235 2596447 - 2593850 - | multi-sensor Signal transduction histidine kinase TERM 2832 2596375 - 2596352 - G 73 -6.6 -4.36554 | gap 1, overlap 2596339 GAGCACGACAAGAAA CCCGTGC-GGC TGC ACCAGCCCGGG GACGTGGATAGGTTC TERM 2833 2596582 - 2596596 + H 70 -4.9 -4.56775 | TTTTCGAAAGGGGGG CTCGC TTTGT GCGGG TTTTTGGAAAAAAAT Rru_A2236 2596824 - 2597645 + | hypothetical protein Rru_A2237 2598982 - 2597699 - | TRAP dicarboxylate transporter, DctM subunit TERM 2834 2598055 - 2598038 - G 70 -9.9 -3.75024 | GTTGAGCATCAACAA GACAACG ACTT CGTTGTC CGTCGCCTGCAGCGC TERM 2835 2598264 - 2598250 - G 84 -9.2 -4.54449 | opp_overlap 2598249, overlap 2598252 ACAGCCCATAGAAAA CGGCGA CCA CCGCCG CTTCGGTCGGGGTGA Rru_A2238 2599485 - 2598982 - | tripartite ATP-independent periplasmic transporter DctQ TERM 2836 2599540 - 2599511 - R 70 -12.7 -2.90075 | TTGCTGGCAAGGACA GGGGGGCGCCTAG CGCG CCTGGCGCCCCCG GAAGGGTCAACGACC Rru_A2239 2600575 - 2599547 - | TRAP dicarboxylate transporter- DctP subunit TERM 2837 2600052 - 2600035 - G 79 -4 -4.88067 | overlap 2600036 AGGTATCGAGAAAAA GCGGCG AGCCGA CGACGC GGATCTTCAGCCCCT Rru_A2240 2601478 - 2600660 - | enoyl-CoA hydratase TERM 2838 2601173 - 2601131 - G 70 -6.1 -4.22346 | gap 1, overlap 2601120 2601132 2601135 CAAAGCCAGCGAAAA CCCAGCGCCGGCCGCCGATC CCTC GA-CGGCGGCGATCACCGGC AGCGGCAAGGCGCGG Rru_A2241 2601875 - 2601570 - | hypothetical protein Rru_A2242 2602430 - 2601945 - | glutathione-dependent formaldehyde-activating, GFA Rru_A2243 2603639 - 2602476 - | hypothetical protein TERM 2839 2603690 - 2603665 - R 79 -14.7 -2.89971 | opp_overlap 2603665, overlap 2603662 2603658 CCGAACAATGAAGGA GGGGCGACCCA AAGC CGGATCGCCCC TTTTCGCACAGTCTT TERM 2840 2603665 - 2603690 + r 84 -11.8 -4.09511 | opp_overlap 2603662 2603658 2603665 CCGAACAATGAAGGA GGGGCGACCC AAAGCC GGATCGCCCC TTTTCGCACAGTCTT Rru_A2244 2606197 - 2603717 - | glycogen/starch/alpha-glucan phosphorylase Rru_A2245 2607831 - 2606374 - | glycogen/starch synthases, ADP-glucose type TERM 2841 2607368 - 2607349 - G 95 -7.8 -5.20333 | gap 1, overlap 2607350 GATCGAGAACAAAAA GGGCGGACG GCG CGCCC-CCC AGGCATTCAGATAGG Rru_A2246 2608135 - 2609406 + | glucose-1-phosphate adenylyltransferase TERM 2842 2609469 - 2609443 - T 95 -20.2 -3.05384 | opp_overlap 2609433, overlap 2609462 TGTTTTGGCATCCAA GGACGCCCTGCC TTA AGCAGGGCGTCC GTGAGTACGACCATC TERM 2843 2609494 - 2609510 + T 100 -2.1 -5.82388 | ACCATCTTTCGCATG GTAGCGG TTA CGGCGAC TTTTTTTTAAGCTTT Rru_A2247 2610095 - 2609598 - | hypothetical protein Rru_A2248 2611081 - 2610524 - | hypothetical protein TERM 2844 2610829 - 2610812 - G 79 -2.5 -5.08601 | overlap 2610814 GCACCGGAACAAAAA GTCCGCC GTGT GGCCGCC GACCTTGACCCGGTA TERM 2845 2611368 - 2611321 - R 90 -17.8 -3.17051 | gap 1, overlap 2611319 2611322 GCTTGACTATCAAGA CCTTAGGACGGCGTGCGGGG-AC CAA GCGCCCCGCACGCCGCCTTAAAA ATATCAGTCCGGGGG TERM 2846 2611367 - 2611322 - R 88 -19.1 -2.50016 | gap 1, overlap 2611321 2611319 CTTGACTATCAAGAC CTTAGGACGGCGTGCGGGG-AC CAA GCGCCCCGCACGCCGCCTTAAA AATATCAGTCCGGGG TERM 2847 2611397 - 2611375 - R 83 -16.2 -3.01831 | opp_overlap 2611379 2611379 2611380, overlap 2611372 GCCTTAAAAATATCA GTCCGGGGGG ACG CCCCCCGGCC CCCGCTTTTTCAACG TERM 2848 2611379 - 2611402 + r 74 -5.9 -4.56597 | gap 1, opp_overlap 2611375 2611372, overlap 2611379 2611380 TAAAAATATCAGTCC G-GGGGGACG CCCCC CGGCCCCCGC TTTTTCAACGCCCGG Rru_A2249 2612456 - 2611407 - | L-threonine aldolase TERM 2849 2611593 - 2611581 - G 73 -9.1 -3.92522 | GTCGAAGGCGACAAA GGCCA TAT TGGCC TCGACCGGGGCGACC TERM 2850 2612001 - 2611959 - G 85 -9.9 -4.18494 | CAGCCCCAGCGAAAA CG-TCCGGCAGACATCGGCGA TGG CCGC-GACATCGGCCGGAGCG TACAGGGTGCCGCCC TERM 2851 2612313 - 2612297 - G 70 -2.1 -4.62069 | overlap 2612300 TGGCGACGGGAAAAA CCATCGC CGG GCGCTCG AAAATCTCGGCCACC Rru_A2250 2612703 - 2613479 + | ABC transporter component Rru_A2251 2613579 - 2614370 + | extracellular solute-binding protein Rru_A2252 2614498 - 2615196 + | amino acid ABC transporter permease TERM 2852 2615295 - 2615305 + G 76 -8.2 -4.26076 | overlap 2615290 GGTGACCCTGGCCGT CGCC ATC GGCG TTTTCATCGCCATCC Rru_A2253 2615209 - 2615928 + | amino acid ABC transporter permease Rru_A2254 2615941 - 2616486 + | hypothetical protein TERM 2853 2616592 - 2616542 - T 100 -16.2 -4.54343 | overlap 2616546 ACAAACTCAAACAAA GGGATCCAGGGTCTGTCCGCTTCA GCA TCAAGCGGACAGACCCTAAGCGCC GATCGCGCGGCCCTT TERM 2854 2616588 - 2616546 - T 79 -16.4 -2.80991 | overlap 2616542 ACTCAAACAAAGGGA TCCAGGGTCTGTCCGCTTCA GCA TCAAGCGGACAGACCCTAAG CGCCGATCGCGCGGC upp 2617289 - 2616633 - | uracil phosphoribosyltransferase Rru_A2256 2617532 - 2617975 + | cytochrome c, class II TERM 2855 2618105 - 2618123 + F 100 -14.6 -5.14563 | opp_overlap 2618105 CGCATCGGTTGATAA GGGGGAAG GAT CTTCCCCC TTTTTTCATGGGGCG TERM 2856 2618123 - 2618105 - f 86 -14.6 -3.29511 | opp_overlap 2618105 CGCATCGGTTGATAA GGGGGAAG GAT CTTCCCCC TTTTTTCATGGGGCG TERM 2857 2618713 - 2618684 - g 73 -14.3 -3.18582 | gap 1, opp_overlap 2618672 GATCTGATCGAGGAA GGCGTCGATGTCGC CGT GCG-CATCGGCGCC CTGCGCGATTCCAGT Rru_A2257 2618273 - 2619187 + | LysR family transcriptional regulator TERM 2858 2619233 - 2619190 - T 100 -23.2 -4.11216 | overlap 2619191 2619194 TTGGGAGCGCTAAAA CCCACGAAGGCCCCCCGGTC GGCA AACCGGGGGGCCTTCGCGTA AGGCTATGGGCGTAA TERM 2859 2619232 - 2619191 - T 100 -24.5 -3.06515 | overlap 2619190 2619194 TGGGAGCGCTAAAAC CCACGAAGGCCCCCCGGTC GGCA AACCGGGGGGCCTTCGCGT AAGGCTATGGGCGTA TERM 2860 2619229 - 2619194 - T 100 -27 -2.75081 | overlap 2619191 2619190 GAGCGCTAAAACCCA CGAAGGCCCCCCGGTC GGCA AACCGGGGGGCCTTCG CGTAAGGCTATGGGC Rru_A2258 2620078 - 2619251 - | hypothetical protein TERM 2861 2619279 - 2619327 + g 74 -12.4 -3.54459 | gap 1, opp_overlap 2619254, overlap 2619259 CGTTCCATCTTGGTC GCGGCCTTCATG-CCCCGGCGAA CCCC TTCGCCGGCTTCATGCAGACCGC TTTCCACGGCGTTGC Rru_A2259 2620611 - 2620132 - | hypothetical protein TERM 2862 2620317 - 2620300 - G 70 -10.5 -3.69354 | overlap 2620301 GGCGAGAACCCCAAA GCCGCCG CCAA CGGCGAC GAACCCCGCCCAGGC Rru_A2260 2621215 - 2620694 - | hypothetical protein TERM 2863 2620732 - 2620785 + g 90 -18.2 -3.58343 | gap 3 CCCAATCGGCGTAGC CGCC-CGGCG-GCGGCGGAGGCGT-GG TGG CCGACGCCTTGGCCGGGCGCCGGGGCG TTTCGGGATCATCGA Rru_A2261 2621435 - 2621629 + | hypothetical protein Rru_A2262 2622080 - 2621652 - | hypothetical protein Rru_A2263 2624646 - 2622121 - | ATPase, E1-E2 type TERM 2864 2622885 - 2622917 + g 71 -12.6 -3.28791 | gap 1, overlap 2622864 CGACCTCGGCATGGT CCAGGGCGGC-GGCG TCTT CGCCTGCCGCGCCGG TTATGCCAACCCGGT Rru_A2264 2625239 - 2624949 - | ferredoxin Rru_A2265 2626531 - 2625230 - | electron transfer flavoprotein-ubiquinone oxidoreductase Rru_A2266 2627647 - 2626550 - | electron transfer flavoprotein Rru_A2267 2628515 - 2627664 - | electron transfer flavoprotein subunit beta Rru_A2268 2629075 - 2628713 - | nitrogen fixation protein NifW Rru_A2269 2630277 - 2629099 - | pyruvate carboxyltransferase Rru_A2270 2630603 - 2630304 - | nitrogen-fixing NifU-like Rru_A2271 2630984 - 2630652 - | HesB/YadR/YfhF TERM 2865 2631125 - 2631173 + H 71 -8 -4.07687 | gap 1, opp_overlap 2631151, overlap 2631094 TTTGCGTGACATCCC GGGCAGGCGCCGTACTTTGTCGG AAAG CCGACAGGGT-CGGCCCCAGGGC TTTTCCCGCACCGAT TERM 2866 2631165 - 2631151 - H 74 -11.4 -3.53444 | opp_overlap 2631125 GTACTTTGTCGGAAA GCCGAC AGG GTCGGC CCCAGGGCTTTTCCC Rru_A2272 2631496 - 2632062 + | TspO and MBR related proteins TERM 2867 2632108 - 2632079 - T 80 -14.3 -3.01712 | overlap 2632083 GCGCCGCGCCTAACA GGAAGGGGGGC GCCACCTA GCCCCCCTCCC CGCCCCTCGCCTCAC nikE 2632953 - 2632120 - | nickel transporter ATP-binding protein TERM 2868 2632734 - 2632693 - G 90 -18 -3.53343 | gap 1, overlap 2632717 AACCGCGCCGCGAAA GGCCCGCCACTCGGCGCGC GAAAA GC-CGCCAAGCGGCCGGCC GCGAAAGGCGATCGT TERM 2869 2632729 - 2632717 - G 78 -10.5 -4.07568 | overlap 2632693 CTCGGCGCGCGAAAA GCCGC CAA GCGGC CGGCCGCGAAAGGCG nikD 2633735 - 2632950 - | nickel transporter ATP-binding protein nikC 2634631 - 2633732 - | nickel transporter permease NikC Rru_A2276 2635572 - 2634628 - | nickel transporter permease NikB TERM 2870 2635411 - 2635377 - G 76 -15 -3.20637 | overlap 2635372 AAACCCAATACTGAA CCGCCAGCGGCTGA TCGAGCC CCAGCCTCTGGCGG GTCTCGGCCAGGGCC Rru_A2277 2637239 - 2635578 - | nickel ABC transporter, periplasmic nickel-binding TERM 2871 2637351 - 2637363 + H 77 -4.1 -4.91109 | opp_overlap 2637348, overlap 2637348 CGTTTCAAATAATGA CGATG GGT CATTG TTTTTGTCATGAAAA TERM 2872 2637480 - 2637490 + H 100 -8.2 -5.63517 | overlap 2637475 GGATTCGTACGACTT CGGC GAA GCCG TTTTTTCTTTCGCAG TERM 2873 2637957 - 2637941 - g 86 -9.3 -4.58395 | overlap 2637945 TGCATTGCGGAAAAA CCACGCC CGA GGCGGGG CAGCGTTGCCGCCAT Rru_A2278 2637634 - 2638983 + | transposase IS66 Rru_A2279 2640155 - 2639313 - | ATP-binding region, ATPase-like TERM 2874 2639819 - 2639806 - G 85 -5.3 -5.0916 | TCTGGAACAGAAAAA TGGTT GGAT AACCA AGGAGTCAAATCCAT Rru_A2280 2640497 - 2640270 - | hypothetical protein TERM 2875 2640411 - 2640429 + g 77 -10.2 -4.015 | AAACTTACCGATAGT GCCCAGCG AAA CGCTGGCC TTCTTTGATAAATCA TERM 2876 2640988 - 2640998 + r 72 -2.4 -4.72986 | overlap 2640979 TGGATAGGGCCTCGA GCGG AGC CCAC TTTTTCCTACAGGTG TERM 2877 2641066 - 2641053 - R 76 -9.5 -4.13014 | CGGAGAGGCGTAAAA CCGCG TCGG CGCGG CACAGAACTTAGACT Rru_A2281 2641825 - 2641157 - | NifQ TERM 2878 2641261 - 2641205 - G 77 -16.6 -2.71731 | gap 2, overlap 2641252 TTCACCGCCGAAGCA GTGGGCGTGATCGT-CGCA-GGCGGCGC AGT GCGGCGCCTTGCACACCACCACGCCCTC GCGGCGGCAGAGTTC TERM 2879 2641886 - 2641918 + r 77 -11.1 -3.61764 | overlap 2641911 AGCCGCCGCCTTTGG CTCAGGCCAGGGCCG GTT CGGCCGGGGCGTGGG TTTGCGCCTTGGTGC Rru_A2282 2642192 - 2641887 - | 4Fe-4S ferredoxin, iron-sulfur binding Rru_A2283 2642738 - 2642265 - | hypothetical protein TERM 2880 2642474 - 2642484 + g 76 -8.2 -4.21194 | TCGGCGAGGCGACGC GGCC GGT GGCC TTTTCAATGGTCAGG Rru_A2284 2643226 - 2642738 - | dinitrogenase iron-molybdenum cofactor biosynthesis Rru_A2285 2644616 - 2643219 - | nitrogenase molybdenum-iron cofactor biosynthesis protein TERM 2881 2643591 - 2643564 - G 74 -5.4 -4.57073 | overlap 2643566 CAGCCCGGCCAAAAA GGGGGCGTCGAC GCTG GTCACCACCGCC TGCAGACGGGCGCCA Rru_A2286 2646061 - 2644613 - | nitrogenase MoFe cofactor biosynthesis protein NifE TERM 2882 2646213 - 2646227 + r 74 -11.4 -3.53012 | opp_overlap 2646221 GTCGGGCCGTTGAAC CCCGAC AAT GTCGGG TTTACGACAGGGCCA Rru_A2287 2646616 - 2646281 - | hypothetical protein Rru_A2288 2646939 - 2646649 - | DNA polymerase, beta-like region Rru_A2289 2647248 - 2648138 + | sulfate adenylyltransferase subunit 2 Rru_A2290 2648138 - 2650063 + | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein TERM 2883 2650078 - 2650044 - f 70 -9.8 -3.53091 | overlap 2650045 2650048 ATCTGTCGGCCGAAA GCGAGGGCTCGGGGAT CTG ATCCCCGGCCCCAAGC CGAAGAGAGAAAACC TERM 2884 2650073 - 2650048 - f 78 -15.5 -2.64155 | gap 1, overlap 2650045 2650044 GTCGGCCGAAAGCGA GGGCTCGGGGAT CTG ATCCCCG-GCCC CAAGCCGAAGAGAGA Rru_A2291 2650188 - 2652353 + | DNA/RNA non-specific endonuclease Rru_A2292 2652774 - 2652379 - | hypothetical protein Rru_A2293 2653424 - 2652771 - | hypothetical protein TERM 2885 2654776 - 2654752 - g 75 -6.9 -4.30576 | overlap 2654753 CGGCGACTACGAAAA GGCCCTGCCCC GGG GCGGCTGGCCC AATTGGGTGATGGGC Rru_A2294 2653823 - 2655451 + | Alpha amylase, catalytic region TERM 2886 2656744 - 2656756 + G 86 -9.1 -4.58395 | overlap 2656729 CGCCATTCCCGGGCG GGCGA TGG TCGCC TTTTTGCAAAATCAC Rru_A2295 2655467 - 2657485 + | malto-oligosyltrehalose trehalohydrolase TERM 2887 2657743 - 2657777 + G 82 -12 -4.06491 | opp_overlap 2657737 2657736 2657743 GACCGAAATCACCAA CCGCCTGCTGGGTCCG GTG CGGGCCCGCCAAGTGG TTTATGTCGGCTTCG Rru_A2296 2657600 - 2658145 + | hypothetical protein Rru_A2297 2659129 - 2658200 - | ribokinase TERM 2888 2658283 - 2658329 + g 91 -11.5 -4.24948 | gap 1, opp_overlap 2658282, overlap 2658306 TGCGGGTGATCGAAT CGGCGGCATAGCGCACCGCCTT GCGC AGGGCGGCG-GCGATATCGCCG TTTTGCGTATAGTAA TERM 2889 2658392 - 2658428 + g 76 -8.5 -4.25104 | CCCGGTGGTGTCCTT GGGGGTCACGCGGACCG GCG CGATGCGGGTGGCGCCC TTTTCCTCGACCAGC Rru_A2298 2660233 - 2659133 - | hypothetical protein Rru_A2299 2661270 - 2660263 - | inner-membrane translocator TERM 2890 2661002 - 2660948 - G 70 -10.6 -3.53811 | GCCACGGTCGGCAAA CCGGCTCCGGCCACC-CCGCCCGACT GGTCG AG-CAGGCGGTGGAAGACGATGCCGG CCAGGATCCCCGACA Rru_A2300 2662262 - 2661285 - | inner-membrane translocator Rru_A2301 2663840 - 2662275 - | ABC transporter component TERM 2891 2663857 - 2663813 - G 100 -19.4 -3.72576 | gap 2, overlap 2663814 2663842 2663843 CGGCGGGGGAGGAAA GCCGGGGCGAGAGC-C-TTGCC GAT GGCAAAGCGCTCCCGCCCCGGG GCCGAAAGCGAAGGA TERM 2892 2663856 - 2663814 - G 100 -22.9 -2.83403 | gap 2, overlap 2663813 2663842 2663843 GGCGGGGGAGGAAAG CCGGGGCGAGAGC-C-TTGCC GAT GGCAAAGCGCTCCCGCCCCGG GGCCGAAAGCGAAGG Rru_A2302 2664937 - 2663888 - | periplasmic binding protein/LacI transcriptional regulator Rru_A2303 2665798 - 2665082 - | deoxyribose-phosphate aldolase Rru_A2304 2666101 - 2666880 + | DeoR family transcriptional regulator TERM 2893 2667231 - 2667218 - g 72 -6.7 -4.17355 | CAACCTGAAAAAATA TGGCT ATGG AGCCA AGGGGTTCGCCCTGT Rru_A2305 2666952 - 2667758 + | haloacid dehalogenase-like hydrolase TERM 2894 2667754 - 2667740 - T 76 -9.2 -4.07568 | GGCCTTCCTGGAAAA CGGCGA GAA CCGCCG CTAGCCCCCCCGATC TERM 2895 2667813 - 2667825 + T 76 -6.2 -4.63179 | opp_overlap 2667813, overlap 2667813 AAAGGGATTTTAAAA GGGG TCCGC CCCC TTTTCCTTCTTCTTT TERM 2896 2667824 - 2667813 - T 71 -7.2 -4.15854 | opp_overlap 2667813 2667813 AAAGGGATTTTAAAA GGGG TCCG CCCC CTTTTCCTTCTTCTT TERM 2897 2668021 - 2668005 - T 74 -6.6 -4.29656 | opp_overlap 2668004, overlap 2668020 TAGAAAATGTGAAAA CCTTCT GCTTA AGAAGG GTCATTTCGCCCCCA TERM 2898 2668060 - 2668042 - T 75 -2.3 -5.00616 | overlap 2668044 TTCGCCCCCAAAAAA CACCCCG CCCGC CGAGGTT ACGACAAACCACCTT TERM 2899 2669284 - 2669300 + T 70 -10.8 -3.53012 | opp_overlap 2669277 2669276 ACTGAAACCTCCCAA GCCGCC ACCAG GGCGGC TTTGGCGCGGGCGGC TERM 2900 2669549 - 2669530 - T 75 -8.6 -4.1899 | gap 1 CCACCGTACTGAAAA GCGAGG-TG GCG CATCCTCGC AGCCCATGCCCCGCC TERM 2901 2669702 - 2669730 + T 91 -4.5 -5.56263 | opp_overlap 2669710, overlap 2669705 2669710 CGCGCCGCGACTCGC GCTAAAAAGGGGT CTG ACCCCTTTTATCC TTTTTCTTTTATCCT TERM 2902 2669710 - 2669722 + T 100 -9.1 -4.73912 | opp_overlap 2669710, overlap 2669705 2669702 GACTCGCGCTAAAAA GGGGT CTG ACCCC TTTTATCCTTTTTCT TERM 2903 2669722 - 2669710 - T 84 -9.1 -4.57073 | opp_overlap 2669705 2669702 2669710 GACTCGCGCTAAAAA GGGGT CTG ACCCC TTTTATCCTTTTTCT TERM 2904 2669804 - 2669781 - T 100 -18.2 -3.97947 | GCGACCGATCAGAAA GGCGTTGCGC CGGG GCGCAACGCC TTGAGGGATCGCAAG Rru_A2306 2670212 - 2669862 - | hypothetical protein TERM 2905 2670138 - 2670108 - G 78 -10.3 -4.0498 | gap 1, overlap 2670102 GAGAAAAACGAACAA GGCGC-CGCCCAGC CCAA GCAGGGCGAGGGCC AGCAGGATCCACAAC Rru_A2307 2671585 - 2670230 - | twin-arginine translocation pathway signal TERM 2906 2671381 - 2671432 + g 75 -7.1 -4.37658 | gap 2, overlap 2671385 GCATCTGCGACAGCC GCGCCGCGCTCGCCAACCCCGCCGC CCCG GCGCCGGCGATGACGATC-C-GCGC TTTTGTCGGAAGCTT TERM 2907 2671585 - 2671603 + g 86 -4.4 -5.13354 | overlap 2671586 TACCTCCCGGGATCA TGCCGCTG CTT TGGCGGCC TTTGTTTTTTCTGAG Rru_A2308 2672080 - 2671748 - | ArsR family transcriptional regulator Rru_A2309 2672193 - 2673857 + | NADH peroxidase Rru_A2310 2673943 - 2674521 + | cytochrome c family protein Rru_A2311 2675358 - 2674570 - | IclR family transcriptional regulator TERM 2908 2675931 - 2675907 - g 71 -3.4 -4.66938 | gap 1, overlap 2675908 2675909 ATCTGGAAGACAAAA GCGGC-GCCGC GAGC GTGGCCGACGC CATCGCCGACGTGCC Rru_A2312 2675615 - 2677774 + | TonB-dependent receptor TERM 2909 2677847 - 2677814 - f 100 -20.3 -4.13767 | gap 1, opp_overlap 2677803 2677802 GCGCCGAGGCCAAAA CCGGTCGCCGTCGGCC CCA GGCCGGCG-CGACCGG TGGCGCCGAAGATTT Rru_A2313 2677888 - 2678223 + | hypothetical protein Rru_A2314 2678210 - 2678500 + | hypothetical protein TERM 2910 2678669 - 2678697 + G 70 -10.1 -3.63655 | overlap 2678665 CCCGCCGATGACGAC GCCCGTCGCCCCG TCC CTGGACGACGCGC TTCCTTTGATTATCA TERM 2911 2678717 - 2678747 + G 70 -6 -4.20531 | TTTGATTATCAGCAC CTTGCGGGCCTC GCCGGAA GCGGCCCGGGAG TTTTCGCTGCATCTG Rru_A2315 2678520 - 2680187 + | PepSY-associated TM helix Rru_A2316 2681689 - 2680265 - | XRE family transcriptional regulator TERM 2912 2680733 - 2680715 - G 85 -13.8 -4.15703 | GCGGATAAAGAAGAA CGGGACGC CGC GCGCCCCG GAGCGTTGCAGGGTC TERM 2913 2681197 - 2681185 - G 100 -10.5 -4.87665 | CGGCATCGAGAAAAA GCCGC TCG GCGGC CTCGTCGAGTTCGGC TERM 2914 2681539 - 2681504 - G 83 -14 -3.78934 | opp_overlap 2681515 GTCTTCCGAGAACAA CTGCACATCGACGCCG AAGG CGGCGTTGATCCGCAG CAGCACCGGCACGGT TERM 2915 2681850 - 2681820 - H 84 -11.8 -4.11484 | opp_overlap 2681820 GGCAAGCCCGGAAAA GGCGGGCGGAGT CCGGCTC ACCCCGCCCCCC TTCTCCGTCCCGCTC TERM 2916 2682036 - 2682046 + G 81 -8.2 -4.56597 | CAATCGTTCGGAGAT CGCG ATC CGCG TTTTTCGGGCGGCGG TERM 2917 2683876 - 2683921 + G 79 -4 -4.87807 | gap 2, overlap 2683877 AATTATCCCGATAAC G-TCG-TCCGCTTTTTCGTCGC CCGG GCGGCGGAGGGGGGGATCGATC TTTTTCGTATCTTCG Rru_A2317 2681989 - 2685429 + | pyruvate carboxylase Rru_A2318 2685597 - 2687096 + | 2-methylcitrate dehydratase Rru_A2319 2687112 - 2688272 + | methylcitrate synthase TERM 2918 2688325 - 2688342 + G 72 -8.3 -4.07568 | opp_overlap 2688319 2688314 2688315 CAAAGGAAAGCGCGG GCACCCG CTTC CGGGCGC TTTTGAACCGCCCGG TERM 2919 2688388 - 2688435 + G 72 -12 -3.53012 | gap 1, opp_overlap 2688386 2688390, overlap 2688394 CCGGCGCCCATAACG GACATGCCGCCTTGCAGGCCCGC GCG GCGGGCTT-CGAGGGGGTGTATC TTTCGGGCGCGGCGA TERM 2920 2688394 - 2688429 + G 73 -14 -3.18571 | gap 1, opp_overlap 2688386 2688390, overlap 2688388 CCCATAACGGACATG CCGCCTTGCAGGCCCGC GCG GCGGGCTT-CGAGGGGG TGTATCTTTCGGGCG Rru_A2320 2688282 - 2689202 + | 2,3-dimethylmalate lyase TERM 2921 2689286 - 2689243 - f 72 -13.1 -3.01712 | gap 1 TCCCGTTCCCCAACA GGGGCGGGCA-TGGCCGG CCGTCCTCC CCGGCCCCTCCCCGCCCC GGCATCGGCATCGGC TERM 2922 2690019 - 2689986 - g 89 -14.5 -4.09685 | opp_overlap 2689985 2689984 CCGCATCCGCTAAAA CGGCCACCACCGATG ATGT CAGTGGTGGCGGCCG GCTTCTCGCCGAGGC TERM 2923 2690051 - 2690041 - g 72 -8.2 -4.11216 | opp_overlap 2690020, overlap 2690042 CGCCGAGGCGCAAAA GCGC AAG GCGC GAACCTTTGCCCGCC TERM 2924 2690097 - 2690075 - g 85 -7.7 -4.72272 | gap 2, overlap 2690077 GCCCGCCAGCAAAAA GCGGCCGAGCG TGT CGC-CG-CCGC CACCTCGCAGCTTGC TERM 2925 2691031 - 2690986 - g 73 -13.9 -3.12884 | opp_overlap 2690987, overlap 2690977 2690974 2690984 AAAGAGCAGCGAAGA GGTCGCCTCGGCGGCCGAGGA ACTG TCCTCGGCGGTCGAGGAAATC AACCGCGCCGCCACC TERM 2926 2691201 - 2691189 - g 79 -2.6 -5.02074 | CCACGGTGGAAAAAA GCGA GACGA CCGC CCAACTGCTCCTTTC Rru_A2321 2689937 - 2691865 + | methyl-accepting chemotaxis sensory transducer Rru_A2322 2691896 - 2693497 + | CheW protein TERM 2927 2693572 - 2693587 + F 73 -4.6 -4.62069 | opp_overlap 2693572, overlap 2693574 GTTACAGCGGGAAAA TCGCCG ACAC CGGCTA TTTTTCCGCTCGCCC Rru_A2323 2693636 - 2694748 + | two component CheB methylesterase Rru_A2324 2694801 - 2695349 + | HEAT repeat-containing PBS lyase TERM 2928 2695869 - 2695889 + G 77 -5.3 -4.6759 | overlap 2695872 TCGGGGCCCGTTCGC TCGCGCGGG TCC CTCCTGCGA TTTTATTGAAGTATT Rru_A2325 2695385 - 2696215 + | MCP methyltransferase, CheR-type Rru_A2326 2696221 - 2696619 + | response regulator receiver domain-containing protein Rru_A2327 2696616 - 2699204 + | CheA Signal transduction histidine Kinases (STHK) Rru_A2328 2699206 - 2699451 + | hypothetical protein TERM 2929 2700136 - 2700166 + G 93 -15.5 -4.04927 | gap 1, opp_overlap 2700125 2700126 GAAAGCCGGCCCGGG TTCA-CGCGCCGCG ATCG CGCGGCGCGATGGA TTATTTCCTCCTTGC Rru_A2329 2699448 - 2700227 + | cobyrinic acid a,c-diamide synthase Rru_A2330 2700242 - 2700616 + | response regulator receiver domain-containing protein TERM 2930 2700762 - 2700774 + G 82 -4.7 -4.85599 | overlap 2700722 2700763 GTGCGCCGGGATCGC CGCGG CCG CCGCC TTTTTCTACGCTCAC TERM 2931 2700981 - 2700924 - g 74 -7.4 -4.22652 | overlap 2700959 GGACATGACCGAAAA GGCGGCCCTGACCCTGGGGTCCGGCC TGCAGG AGATGGACGCCGGGGTGAGCGCGGCC CTCGCCGGGATCGAG Rru_A2331 2700628 - 2701341 + | hypothetical protein Rru_A2332 2701338 - 2701718 + | response regulator receiver domain-containing protein TERM 2932 2701802 - 2701790 - f 70 -3.3 -4.64861 | CCTCGCCAAAAGAAA GACCC CGC GGGTA TGGAGGAAGCGATGA Rru_A2333 2701814 - 2703199 + | chemotaxis sensory transducer Rru_A2334 2704267 - 2703329 - | nucleoside-diphosphate-sugar epimerase TERM 2933 2703544 - 2703554 + g 72 -6.8 -4.26622 | GCGTACCGAACCGGG CGAG ATA CTCG TTTTCGATCTCCTTT Rru_A2335 2704345 - 2705181 + | AraC family transcriptional regulator Rru_A2336 2706599 - 2705325 - | major facilitator transporter TERM 2934 2706330 - 2706318 - G 71 -3.3 -4.60487 | GATCACGTCCAAAAA GCCCA TGG CGAGC AGCACCAGCGCCAGA Rru_A2337 2708865 - 2706640 - | TonB-dependent receptor TERM 2935 2706693 - 2706670 - G 74 -10.2 -3.87956 | gap 1, opp_overlap 2706669 2706667 2706670, overlap 2706659 AAAACCGAGACCAAA GGCGCGGCCGG GCG CCGGA-GCGCC GTATTTCGTCGCCGA TERM 2936 2708043 - 2708023 - G 70 -6.2 -4.1899 | gap 1, opp_overlap 2708027, overlap 2708026 GTATTCGACGGAAAA CAACGCGGA TGTT TCCG-GTTG GATATCCCAAAGCAG TERM 2937 2709270 - 2709256 - R 95 -2.7 -5.60993 | opp_overlap 2709258, overlap 2709258 TTCGGTATAAAAAAA CACCC CCATC GGGAG CTTCTGAAGGCGGGG TERM 2938 2709270 - 2709258 - R 76 -6.9 -4.45201 | opp_overlap 2709258, overlap 2709256 CGGTATAAAAAAACA CCCCC ATC GGGAG CTTCTGAAGGCGGGG TERM 2939 2709401 - 2709380 - R 71 -6.5 -4.19974 | overlap 2709381 AAAACCGGGAAGAAA GCCCATGGA CATC CCCATGGGA GGGCCGTCGGGACCG Rru_A2338 2710404 - 2709472 - | AraC family transcriptional regulator TERM 2940 2709618 - 2709603 - G 72 -6.8 -4.18494 | overlap 2709606 TATGCGTACGCAAAA GAGCGC AGGC ACGCTC CATGCGGTGCCGTTG TERM 2941 2709782 - 2709756 - G 76 -8.6 -4.29738 | opp_overlap 2709758, overlap 2709758 TCAGATCGAGCAAAA GACGGTCGCGCG CGG CGAGCAACCGTT GTCGTTCGCGCGGGG TERM 2942 2709780 - 2709758 - G 73 -11.2 -3.74902 | opp_overlap 2709758, overlap 2709756 AGATCGAGCAAAAGA CGGTCGCGCG CGG CGAGCAACCG TTGTCGTTCGCGCGG TERM 2943 2710027 - 2710004 - G 72 -11.8 -3.53811 | gap 1, overlap 2710007 CGGATTTGGTCGAAA TCATCGCCGAC GAG GTCGGCGA-GA ACGTCCGGCGCCACC TERM 2944 2710025 - 2710007 - G 73 -14.6 -2.90615 | overlap 2710004 ATTTGGTCGAAATCA TCGCCGAC GAG GTCGGCGA GAACGTCCGGCGCCA Rru_A2339 2712305 - 2710557 - | ABC transporter component Rru_A2340 2714113 - 2712302 - | ABC transporter, transmembrane region TERM 2945 2712350 - 2712333 - G 78 -14.1 -3.53012 | GCCGCGCCCTGGAAA CCGGCGG CCGC CCGCCGG GCAGAGCCCGCCGGA Rru_A2341 2714551 - 2714949 + | hypothetical protein TERM 2946 2715147 - 2715196 + G 87 -6.9 -5.01497 | gap 1, overlap 2715148 GTCGGGCGGTGATGG CGCGGGTGCGCGATACCCTGGGGC TAG GCCCCCAGG-ATGGCCTGCCCGCC TTTTTCTGTGGTCAT TERM 2947 2715212 - 2715256 + G 74 -2 -4.7254 | gap 2, opp_overlap 2715216, overlap 2715214 TTTTTCTGTGGTCAT CA-G-AGCGATGGCGCCCCGGT GCG GCCGGGGCACCATGACCACCTG TTTTTCCTGGCCGAT TERM 2948 2715250 - 2715216 - g 75 -15.7 -2.78384 | opp_overlap 2715214 2715212 TCTGTGGTCATCAGA GCGATGGCGCCCCGG TGCGG CCGGGGCACCATGAC CACCTGTTTTTCCTG Rru_A2342 2714978 - 2715835 + | hypothetical protein TERM 2949 2715872 - 2715899 + F 85 -2.7 -5.40474 | overlap 2715873 CGCCCCTCGAATGGC CGGCTTGAGGA CAGCCC TTTTCAAGCCA TTTTTTTCGACCCCT TERM 2950 2716334 - 2716365 + F 71 -9.6 -3.76402 | gap 1, opp_overlap 2716343, overlap 2716343 TGTCTCCGCCTTGCC GAGATTAAA-GGGGT TAA ACCCCTTTTTATCTC TTTGATGCCTCGGCT TERM 2951 2716355 - 2716343 - f 71 -9.1 -3.83026 | opp_overlap 2716343 2716334 CTTGCCGAGATTAAA GGGGT TAA ACCCC TTTTTATCTCTTTGA TERM 2952 2716343 - 2716355 + F 100 -9.1 -5.14985 | opp_overlap 2716343, overlap 2716334 CTTGCCGAGATTAAA GGGGT TAA ACCCC TTTTTATCTCTTTGA TERM 2953 2716440 - 2716451 + F 83 -2.2 -5.1861 | CGCCGTTAAAAGCTC TCCT TTCC GGGA TTTTTTACTCATGGG TERM 2954 2717360 - 2717343 - g 74 -7.7 -4.16842 | opp_overlap 2717343 2717345, overlap 2717345 CGCATCGGCAAGAAA GACAGAG GAGG CTCCGTC TGTTTGGACAGAATG Rru_A2343 2716563 - 2717564 + | hypothetical protein TERM 2955 2717637 - 2717663 + T 72 -13.7 -2.64155 | gap 1, overlap 2717635 2717635 2717653 2717654 GGGGAACGGGGTACG GCC-GCTCCGGC TTCG GCCGGGGCCGGC TCAGTTTCAGCCGCA Rru_A2344 2718615 - 2717731 - | hypothetical protein TERM 2956 2718049 - 2718029 - G 83 -2.4 -5.24129 | overlap 2718030 CTCGTCCAGAAAAAA TGACGGCG GCGGA CGACGTCG AGCACATAATCGCCG TERM 2957 2718630 - 2718603 - G 70 -2.6 -4.67353 | opp_overlap 2718603, overlap 2718604 CGAGGGAGCCAAAAA CGAAGGGGGTCA CGGA TGACGACCTTCC TTGATAGGGGCGGCT TERM 2958 2718641 - 2718652 + r 71 -7.2 -4.15565 | overlap 2718639 CTTCCTTGATAGGGG CGGC TGCG GCCG TTTTCGCCTCGTCGC Rru_A2345 2719698 - 2718667 - | glycosyl transferase, group 1 TERM 2959 2718818 - 2718801 - G 83 -9.1 -4.42806 | gap 1, overlap 2718802 TGATGTCGAAATAAA GCC-GGCG GAG CGCCTGGC TCCACTGGTCGGGCG Rru_A2346 2720619 - 2719717 - | hypothetical protein TERM 2960 2720343 - 2720330 - G 70 -2.3 -4.63527 | overlap 2720332 GGATCATGGGAAAAA CTGTC AAGG GTCAG GCTGGACCCCGGGCC Rru_A2347 2722044 - 2720668 - | hypothetical protein TERM 2961 2722405 - 2722426 + G 78 -6.5 -4.57837 | gap 1, opp_overlap 2722404 2722405, overlap 2722407 CCGCTGCCCCGAAAC CCCTCC-CCC GCC GGGCGGAGCG TTTTTGCCAAGCTAT TERM 2962 2723712 - 2723736 + G 70 -11.3 -3.57144 | opp_overlap 2723710 TCGCGCCAACCGACT GCGACGCCCTG CGC CATGGCGCCGC TTTGGAACTGGAGGC TERM 2963 2725011 - 2725025 + G 76 -8.5 -4.22652 | GGTTTGGCGGTTGGG GGCCG GGAAG CGGCC TTTTCGATGGTCTGA Rru_A2348 2722265 - 2727778 + | glycosyl transferase TERM 2964 2728062 - 2728037 - g 74 -12.5 -3.53563 | opp_overlap 2728056 AGATCGGCGTTGAAA GCGGGCTTAGC CTGG GCCTAGCCCGC GCCGAGACCCGCTGC Rru_A2349 2727775 - 2728638 + | hypothetical protein Rru_A2350 2729564 - 2728599 - | methylase involved in ubiquinone/menaquinone biosynthesis-like Rru_A2351 2729598 - 2731271 + | macrocin-O-methyltransferase TERM 2965 2731546 - 2731558 + T 73 -9.1 -3.86897 | opp_overlap 2731539 2731536 ACGAATCAGGGATAG CCAGC TAT GCTGG TTTATGCCGGATGGG TERM 2966 2731712 - 2731684 - T 100 -15.4 -5.54907 | opp_overlap 2731684 TCGACAAAACAAAAA GCCGCTGATTCC GGTCT GGAATCAACGGC TTGATATCTGGTTGC TERM 2967 2731684 - 2731712 + T 81 -13.9 -3.35278 | opp_overlap 2731684 TCGACAAAACAAAAA GCCGCTGATTCCG GTC TGGAATCAACGGC TTGATATCTGGTTGC TERM 2968 2733214 - 2733227 + T 78 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTAGTAAACAGT Rru_A2352 2738110 - 2737733 - | hypothetical protein TERM 2969 2737861 - 2737851 - G 90 -3.2 -5.40072 | TTCCCTTGAAAAAAA CCGT CAA ACAG ATCGGACCGGAAGAC TERM 2970 2738045 - 2738057 + g 79 -3.4 -5.02074 | GTAAGAGCTTCTTAG CCTT ATCGC AAGG TTTTTTGGCCGATGC Rru_A2353 2739718 - 2738117 - | tetratricopeptide TPR_4 TERM 2971 2738315 - 2738331 + g 72 -5.8 -4.38712 | gap 1, overlap 2738312 GGCCGCCCATCCGGC GCG-GGC ATCG GCCTCGC TTTTGTAGGAATCGA TERM 2972 2738367 - 2738382 + g 73 -6 -4.35524 | overlap 2738369 ACGCCATTGGCGGCC GAGCGG CCCG CCGCGC TTTTGCCTTTGGCGG TERM 2973 2739144 - 2739160 + g 78 -13.7 -3.53811 | overlap 2739134 2739158 GTGGTCGTGACCGTG CGCACGG TCA CCGTGCG TTTCCCCGAGGTCCG TERM 2974 2741472 - 2741442 - g 77 -6.7 -4.56597 | gap 1, opp_overlap 2741463, overlap 2741443 2741444 GTCGCCCGCGAAAAA CTGCGCCG-CGCCG CCGC CAGCGCCGGCCCCG GCCACCCTGATCTGG Rru_A2354 2739972 - 2741603 + | adenylate cyclase TERM 2975 2741644 - 2741599 - T 95 -14.7 -4.10007 | overlap 2741600 ACAAGGTTTGGAAAA GCTAGGGCGATGCGCGGGGAC GAGG ATTCCCGCAGATCGCCCTAGT CGGGCCCGTCGTCCC TERM 2976 2741643 - 2741600 - T 89 -18.2 -3.05522 | overlap 2741599 CAAGGTTTGGAAAAG CTAGGGCGATGCGCGGGGAC GAGG ATTCCCGCAGATCGCCCTAG TCGGGCCCGTCGTCC Rru_A2355 2741885 - 2741640 - | hypothetical protein TERM 2977 2742380 - 2742413 + G 77 -7.3 -4.56597 | gap 1, opp_overlap 2742392, overlap 2742382 2742383 2742392 AGACGCTGGTCTATT GCTCGGAAGGCAGCCC CGA GGGCTTCAATCCG-GC TTTTTACACCACCGG Rru_A2356 2742295 - 2743884 + | extracellular solute-binding protein TERM 2978 2743898 - 2743922 + F 100 -21.5 -4.93365 | opp_overlap 2743882 2743894 2743893 AGCCGACAAAGCCGG CGGGGGAAGGC GAT GCCTTCCCCCG TTTTTCATTGTGCGG Rru_A2357 2744061 - 2745071 + | binding-protein dependent transport system inner membrane protein Rru_A2358 2745077 - 2746054 + | binding-protein dependent transport system inner membrane protein TERM 2979 2746810 - 2746768 - g 70 -10.4 -3.65902 | overlap 2746769 GTCAGGTGATGGAAA CCGGGGCGGTGCCGGCGATC TTC GATCGTCCCCACCACCCCTA TACCGCCGCCCTGCT Rru_A2359 2746065 - 2747093 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like dppF 2747090 - 2748124 + | dipeptide transporter ATP-binding subunit Rru_A2361 2752823 - 2748141 - | multi-sensor hybrid histidine kinase TERM 2980 2749116 - 2749104 - G 74 -10.5 -3.79021 | opp_overlap 2749104 2749103, overlap 2749094 CAAAACCGCATCAAA CGGCG CAT CGCCG GTTTGCTCGGCCAAA TERM 2981 2750563 - 2750618 + g 85 -10.5 -4.18488 | opp_overlap 2750576 2750579 ATCGAAAACTCCCGC GCCGAGGC-CAGAACACTGCGCAGCAA GGTG TTGCTGCG-ATTGCGCTCCGCCTCGGC TTTCTTGCGATCGGT TERM 2982 2750703 - 2750688 - G 72 -4.6 -4.56597 | overlap 2750690 GTCCTCGCCGAAAAA CGGCGT CAGA ACGCTG TCCAACCAATAAAGG TERM 2983 2751379 - 2751389 + g 70 -2.4 -4.66833 | AGCTCCGCGGTCCGG CTGG CGA CCTG TTTTTCCAATTGGGC TERM 2984 2751947 - 2751979 + g 74 -7.5 -4.25283 | CCGTGACCGAGATTT CCCAGACCCGCCCGA AAA TCGAGCGGGTCAACG TTTTCGTCACACACT TERM 2985 2752984 - 2752937 - R 100 -18.3 -3.92869 | overlap 2752909 2752938 TGAGCGACGGATAAA CCGGCGCCCGCCGCGCGCCGC AATCGG GCGGCGAACGGCGAACGGCGA ACGGGCAGGAGTTAA TERM 2986 2752983 - 2752938 - R 88 -19.6 -2.954 | overlap 2752909 2752937 GAGCGACGGATAAAC CGGCGCCCGCCGCGCGCCGC AATCGG GCGGCGAACGGCGAACGGCG AACGGGCAGGAGTTA Rru_A2362 2753478 - 2752996 - | protein-methionine-S-oxide reductase Rru_A2363 2754301 - 2753534 - | endonuclease/exonuclease/phosphatase Rru_A2364 2754742 - 2754413 - | hemimethylated DNA-binding region TERM 2987 2756544 - 2756560 + G 79 -5 -4.82667 | overlap 2756545 TCGCCCAGGCCCGTC CCGGCC AGCCC GGCCGC TTTTTGCTGTCCTCG TERM 2988 2756753 - 2756809 + G 77 -13.6 -3.53012 | GAAACCGTCACCTGG GACCCGCGCGCCGAGGCCGTCG-TCGCC CGC GTCGAGCGCCG-CCTGGGCGCCCTGGTC TTTGAAAGCCGCGAC Rru_A2365 2754881 - 2757463 + | ATP-dependent helicase HrpB TERM 2989 2758431 - 2758477 + G 70 -10.8 -3.53012 | gap 2, opp_overlap 2758429 GCGAGGCCGAACAGC GGCGGCGCGCCGAGGAGGCCGA ACGCA TCGGCGCCCT-GGCCCG-CGCC TTTGACGCCGCCACC Rru_A2366 2757614 - 2759296 + | methyl-accepting chemotaxis sensory transducer TERM 2990 2759335 - 2759378 + F 80 -10.3 -4.05033 | overlap 2759335 TGCACCGGTTTTAGG CC-CTTGGGCAGGACGACCGC CGCC GCGGACGTCCT-CCCAGCCGG TTTCTCTGGCATCAC Rru_A2367 2759476 - 2759877 + | response regulator receiver domain-containing protein Rru_A2369 2761843 - 2760689 - | hypothetical protein Rru_A2368 2759874 - 2760743 + | transcriptional regulator TERM 2991 2762473 - 2762497 + G 76 -15.7 -2.88231 | overlap 2762465 TGCGCCACGCCATCG TCGAAGCCGCC GCT GGCGGCGTCGA TATGATCGTTCTGGT TERM 2992 2762643 - 2762588 - g 70 -6.5 -4.2558 | gap 1 CATGCCCGAGGAAAA CGCCGCGC-GGGTTCAGGCCCTGCCG CTGAC CGCCCGGGCCAATGCCTTGCGCGACG GCGGGCTGGTGCTGC Rru_A2370 2762139 - 2762711 + | GCN5-related N-acetyltransferase TERM 2993 2763088 - 2763119 + G 77 -10.8 -3.8647 | gap 1 CGCGCGCCCGTCTGG GC-CTGGGCGTCGCC TAT GGCGATGCCCGCAGC TTTCATCTGCTCAAT Rru_A2371 2762928 - 2764355 + | hydroxyacylglutathione hydrolase Rru_A2372 2764423 - 2765067 + | sigma-24 (FecI) Rru_A2373 2765104 - 2766093 + | putative FecR TERM 2994 2766248 - 2766281 + G 74 -7.4 -4.27316 | overlap 2766249 CGCGGGACCACGATG ACGGGGCGCAG-GGGC GCGC GCCCGCTG-GCCTCGC TTTTGGCTTCGACCA TERM 2995 2766541 - 2766581 + G 81 -5.1 -4.79223 | overlap 2766566 CCTTGTCAGCGGCAC GGGCCTTGCGGTCCGCCTC ACC GGAGCGGACGCCGCCGCCC TTTTTGATCCTCTGC TERM 2996 2766806 - 2766760 - g 77 -5.1 -4.62783 | gap 1, overlap 2766805 TACGGACCTGAAAAA GGTCCCCCAATCCATCGCCGTG GTGT CACGCC-AGGAGTTGGAAGACC GCGACGCGCAAAGCT TERM 2997 2767730 - 2767711 - g 72 -11.4 -3.5812 | gap 1, overlap 2767709 CAGCGATTACAAATA CGGG-GCGG GAA CCGCGCCCG ACCTGAACCTGATCA TERM 2998 2767826 - 2767806 - g 74 -14.7 -3.04263 | ACCTCATCCGCAATA CCGTCCGCC AGC GGCAGACGG GCCTCTACCTTCAAG TERM 2999 2768064 - 2768052 - g 70 -10.5 -3.66018 | opp_overlap 2768054 CGACCACCGGAACAA GCGCC AGC GGCGC GGCCTTTGAACCGAC Rru_A2374 2766206 - 2768674 + | TonB-dependent siderophore receptor Rru_A2375 2768744 - 2769004 + | hypothetical protein Rru_A2376 2769370 - 2769104 - | hypothetical protein Rru_A2377 2769660 - 2769409 - | transcription regulator Rru_A2378 2770398 - 2769874 - | transcriptional regulator TERM 3000 2769940 - 2769924 - G 72 -8.7 -4.07568 | CGGTTTTTGCCAAAA GATCCTC GAC GAGGACC ATGGCGGCGGCCATA TERM 3001 2770590 - 2770603 + r 71 -5.3 -4.37886 | AAAGCGAATCCTTCG GGTAA CCGC TTACC TTTTGTCCGGACTCG TERM 3002 2770761 - 2770795 + r 95 -20.3 -2.65815 | opp_overlap 2770761, overlap 2770752 2770793 TATGGCCCTAGATCA GGATGATTTCAGGTC TGATC GACCTGAAATCATCC TGATCTAAATCTAAA TERM 3003 2770795 - 2770761 - R 95 -20.3 -2.62396 | opp_overlap 2770752 2770761 2770793 TATGGCCCTAGATCA GGATGATTTCAGGTC TGATC GACCTGAAATCATCC TGATCTAAATCTAAA Rru_A2379 2771876 - 2770863 - | rubrerythrin TERM 3004 2771941 - 2771902 - R 72 -14.2 -2.64155 | overlap 2771898 2771899 2771922 GCTCGCGGAAACGGA TGGCGGAGGGCCCCCTCA AAGA TGGGACGGCCCTCCCCCA ACGCAACCGGAGTAT Rru_A2380 2773221 - 2772010 - | major facilitator transporter Rru_A2381 2773874 - 2773269 - | lipocalin-like protein TERM 3005 2773331 - 2773341 + g 72 -8.2 -4.07885 | opp_overlap 2773323 GGATCAACTCGTCAA CGGC GAA GCCG TTTTCGCGGGCGATA Rru_A2382 2774696 - 2773914 - | binding-protein dependent transport system inner membrane protein Rru_A2383 2775694 - 2774693 - | ABC transporter component TERM 3006 2774927 - 2774892 - G 74 -12.4 -3.53012 | GCGCCCGCCGCCAAA GGCGGCCCCTCGGCCG ATCC CGGCTCAAGGGCGGCC TCCACCGACAGCAGA TERM 3007 2774983 - 2774957 - G 74 -10 -3.8647 | overlap 2774958 ATCGAGCAGACGAAA GGGCCGGTCGGC GCC GCCGATCAGCCG CTCGACGAAGGCATC TERM 3008 2775235 - 2775255 + g 74 -8.1 -4.24342 | CCGGTTCGGCGGCCA GGGCGCGGG CCA CCCCCACCC TTTGTTGCTCGCCGC Rru_A2384 2776872 - 2775694 - | binding-protein dependent transport system inner membrane protein Rru_A2385 2777909 - 2776995 - | substrate-binding region of ABC-type glycine betaine transport system Rru_A2386 2778448 - 2778047 - | hypothetical protein Rru_A2387 2779476 - 2778535 - | ABC transporter, periplasmic substrate-binding protein, putative TERM 3009 2779128 - 2779073 - G 74 -12.2 -3.57144 | GCCGGGATGCCCAAA GCCGCTCCCAGGGCCCCGGCCGAGGG CGCG CGCACGGCGGCGACCCCGGGCAAGGC GCCATCGACCGGCCG TERM 3010 2779320 - 2779292 - G 80 -13.9 -3.72576 | gap 1 CGCCCGGCCAGGAAA GCCG-CCTGCCG GCCCAT CGGCAGGGCGGC CGGCACCACCACCCG Rru_A2388 2780363 - 2779473 - | ABC-3 transporter component TERM 3011 2779539 - 2779529 - G 79 -8.2 -4.32402 | overlap 2779530 CCCCAAGGAAAAGAA GGCC GGC GGCC AGGATGATGGCGCCG TERM 3012 2779676 - 2779644 - G 81 -5.3 -4.77036 | overlap 2779645 2779648 GCTGAGCAGGAAAAA TCCACGCAGGGAGCG TGC CGCCACCCGCGCCGC CGCCGCCGGAATGAC Rru_A2389 2781091 - 2780360 - | ABC transporter component TERM 3013 2780552 - 2780533 - G 77 -7.8 -4.42386 | gap 1 GCTCCACCCATAAAA CCGTGACGC CGC GCGCC-CGG AACCCGGCCAGAACA Rru_A2390 2782008 - 2781088 - | twin-arginine translocation pathway signal Rru_A2391 2782529 - 2782005 - | hypothetical protein Rru_A2392 2782876 - 2782541 - | hypothetical protein Rru_A2393 2783376 - 2782876 - | hypothetical protein TERM 3014 2783170 - 2783156 - G 82 -12.8 -3.95022 | TTGACCAAGATGAAA CGGCGC AGG GCGCCG TCGGCCCCGGGTTCC TERM 3015 2783255 - 2783235 - G 73 -13.9 -3.17194 | ACGGCCCCAAGGCAA CGGCGGCGG GGG CCGTCGCCG GCATGGCGCCGACGG Rru_A2394 2784550 - 2783369 - | PepSY-associated TM helix TERM 3016 2783588 - 2783606 + g 74 -2.2 -4.8048 | overlap 2783592 CGAGGCCAAGCCCAG GGGCCCGG AGT CTCCGCCC TTTTTGCTATAAAGC TERM 3017 2783740 - 2783725 - G 73 -6 -4.41348 | overlap 2783727 TGCCGGGGAAATAAA GCGCGG TAAC CCGCCC ACCCGCATGGGTGGC Rru_A2395 2786997 - 2784559 - | TonB-dependent siderophore receptor TERM 3018 2786571 - 2786549 - G 73 -11.2 -3.72576 | overlap 2786550 CGTTCGGCGACGAAA CCGGCGACCG GCC CGGTCGGCGA TTGGCGCAAGGGGGC TERM 3019 2786623 - 2786638 + g 82 -11.8 -4.07568 | GGCCACGGTCACCCC GCCGGC CGCC GCCGGC TTTTCCAGCACAACC TERM 3020 2786729 - 2786771 + g 77 -13.4 -3.53563 | opp_overlap 2786701 TCCTCGGGCGCCATG GCGCCGCTGACCGCC-GGCG CCGCC CGCCCGGCGACCA-CGGCGC TTTCGGCGGCGATCT Rru_A2396 2788128 - 2787133 - | putative FecR Rru_A2397 2788763 - 2788224 - | sigma-24 (FecI) TERM 3021 2788800 - 2788814 + H 71 -7.1 -4.21194 | overlap 2788796 2788794 CTCCCCCGACAGGGG GCGAG CCCCC CTCGC TTTTGAATAATGGGC TERM 3022 2788868 - 2788886 + H 70 -3.1 -4.58283 | gap 2, overlap 2788867 2788868 GAACGACTATCATTT CG-GG-CCG CTT CGGTCCACG TTTTTCAGACACTTA TERM 3023 2788995 - 2789013 + H 74 -5.8 -4.53303 | overlap 2788997 TCCCGGGAATGGCGG CGGCCGAG AGT CGCGGCGG TTTTATGTCCCACTA TERM 3024 2789032 - 2789044 + H 73 -4.9 -4.71708 | TATGTCCCACTAATT TAGTA ATA TACTA TTTTGATTTATTATT TERM 3025 2789319 - 2789293 - H 73 -8.7 -3.96216 | gap 1 TTCCGACCCAAACAA CGACGCCCGGCC GATG AGCC-GGCATCG ATCGAAGGAGGAGCG TERM 3026 2789646 - 2789661 + G 74 -7.5 -4.20531 | opp_overlap 2789640 2789643 TATGTACAAGATCGC CGGCG AGCTGA CGCCG TTTTGCATGCATGTC Rru_A2398 2789356 - 2792916 + | pyruvate-ferredoxin (flavodoxin) oxidoreductase TERM 3027 2792949 - 2792977 + F 100 -21 -5.31275 | GCCGCTTCGCCGATG GCCCCGCCCCCT GTCCG GGGGGGCGGGGC TTTTTTGTGGTAACC TERM 3028 2793065 - 2793081 + F 77 -11.5 -3.69621 | overlap 2793067 ATCGCTTTCCCGGGC CGGGGGG AAC CCCCCTG TTTCCCCTTCTCGGT TERM 3029 2793308 - 2793336 + G 75 -3.1 -4.75288 | TGTTGAACCATTCTT CCCTTGGATAT GTTCAGG ATGCCCAGGGG TTTGTTTTCATCTCC TERM 3030 2794366 - 2794353 - g 70 -2.3 -4.70319 | overlap 2794361 TGAGCAAAAGCAAAA GGCCA AAAC TGCCC AAAGGGCCGCCGCCC TERM 3031 2794375 - 2794361 - g 72 -7 -4.28651 | overlap 2794353 2794370 AGCAAAAGGCCAAAA CTGCCC AAA GGGCCG CCGCCCGCACCTGAC Rru_A2399 2793292 - 2794389 + | hypothetical protein TERM 3032 2794460 - 2794435 - T 100 -16.2 -5.51165 | opp_overlap 2794435 AAAAGCTCAAAAAAA GACGCGGAGG GGAGAG CCTCCGCGTC TTCTGCTTTGACCGG TERM 3033 2794435 - 2794460 + T 93 -16.2 -3.60151 | opp_overlap 2794435 AAAAGCTCAAAAAAA GACGCGGAGG GGAGAG CCTCCGCGTC TTCTGCTTTGACCGG Rru_A2400 2795907 - 2794507 - | ribulose bisphosphate carboxylase Rru_A2401 2796979 - 2796032 - | LysR family transcriptional regulator TERM 3034 2796402 - 2796370 - G 73 -13.3 -3.29144 | opp_overlap 2796364, overlap 2796371 2796373 TCAGCTTTTCCATAA GGATGCGCGTGCCCG ACC CCGGCTCGCGCATCA GAAAGGTTTCCCCCG TERM 3035 2796401 - 2796371 - G 80 -16.8 -2.57344 | opp_overlap 2796364, overlap 2796370 2796373 CAGCTTTTCCATAAG GATGCGCGTGCCCG ACC CCGGCTCGCGCATC AGAAAGGTTTCCCCC Rru_A2402 2797138 - 2797824 + | ribulose-5-phosphate 3-epimerase TERM 3036 2798715 - 2798730 + G 74 -2.4 -4.72272 | opp_overlap 2798716, overlap 2798716 GCGCCTGCTCTATGA AGCCGC CCCG GTGGCC TTTTTGATGGAACAG Rru_A2403 2797825 - 2798934 + | D-fructose 1,6-bisphosphatase Rru_A2404 2799037 - 2799915 + | phosphoribulokinase TERM 3037 2800129 - 2800094 - g 79 -11.8 -3.76413 | gap 1, overlap 2800087 2800095 GTGGAAAAGGCCAAA TCCGGCCAT-CCCGGCG CGC CGCTGGGCATGGCCGAT ATCGCGGTGGCGCTA TERM 3038 2800128 - 2800095 - g 76 -15.3 -2.85366 | gap 1, overlap 2800094 2800087 TGGAAAAGGCCAAAT CCGGCCAT-CCCGGCG CGC CGCTGGGCATGGCCGA TATCGCGGTGGCGCT TERM 3039 2801250 - 2801282 + G 73 -13.4 -3.29144 | gap 1, overlap 2801275 CCGGGCGCTATCTGT CGGCGGGCGTGCGCG AGTT CG-GCATGGCCGCCG TTCTCAACGGCATGG Rru_A2405 2799977 - 2802025 + | transketolase TERM 3040 2802104 - 2802135 + F 100 -5.6 -6.06723 | overlap 2802107 GACCCACCGCAACCT TACCCCCCCAGGCC TCTC GCCCAGGGGGGTTC TTTTTTTTTAAAAAA TERM 3041 2802107 - 2802132 + F 100 -11.7 -5.09685 | overlap 2802104 CCACCGCAACCTTAC CCCCCCAGGCC TCTC GCCCAGGGGGG TTCTTTTTTTTTAAA TERM 3042 2805027 - 2805055 + G 100 -19.6 -4.07535 | opp_overlap 2805023 ACGCGATCGAACGGG CGCGGCGCACCG GCGGG CGGTGCGCCGTG TTGTTTCTCGACCTT Rru_A2406 2802329 - 2806234 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Rru_A2407 2806336 - 2806923 + | GCN5-related N-acetyltransferase TERM 3043 2806946 - 2806935 - T 74 -3.6 -4.84918 | overlap 2806930 CTGAGAAAGAGAAAA CCCG TTTT CAGG AGCAGGGGGCGACGT Rru_A2408 2808762 - 2806942 - | RecJ exonuclease TERM 3044 2807811 - 2807757 - G 72 -12.9 -3.21276 | gap 3, overlap 2807755 CCTCGCTCGACAACA GGGCCGCG-CCCA-TGCCGGCCTGCC CCACCC GGCCG-CCGGCATTGACCCGCGGCCC CAGCATGAATCCCAG glpX 2809929 - 2808922 - | fructose 1,6-bisphosphatase II TERM 3045 2808987 - 2808971 - G 77 -7.9 -4.36914 | overlap 2808975 CGGGTGTCGATAAAA CGCAGCG TTC CGGTGCG CGATCGCATCACCAG TERM 3046 2809141 - 2809159 + g 73 -13.1 -3.31144 | GGGATCGGTGATGCC GGCCGCC CGCAC GGCGGCC TTCTCGGAGTCGCCG TERM 3047 2810168 - 2810113 - R 73 -13.7 -2.78384 | gap 3, opp_overlap 2810112, overlap 2810116 2810118 2810128 2810130 TCTCGTTTCACCAGA TC-AGAGCGGCGAA--GAGACGGAAA ATCGCTG TTTCCGTCTCCGCTCGCCGCTCTAGA ACTGTTCGATGCGGA TERM 3048 2810164 - 2810116 - R 78 -15.6 -2.66316 | gap 2, opp_overlap 2810112, overlap 2810113 2810118 2810128 2810130 CGTTTCACCAGATCA GAGCGGCGAA--GAGACGGAAA ATCGCTG TTTCCGTCTCCGCTCGCCGCTC TAGAACTGTTCGATG TERM 3049 2810162 - 2810118 - R 70 -12.4 -2.87468 | gap 2, opp_overlap 2810112, overlap 2810116 2810113 2810128 2810130 TTTCACCAGATCAGA GCGGCGAA--GAGACGGAAA ATCGCTG TTTCCGTCTCCGCTCGCCGC TCTAGAACTGTTCGA Rru_A2410 2811456 - 2810164 - | homoserine dehydrogenase Rru_A2411 2812694 - 2811453 - | aminotransferase TERM 3050 2811548 - 2811570 + g 71 -9.1 -3.78934 | AGGCCTTGATATTGC GCACCGCCT GACGG ATGCGGTGC TTGTTCTCGACCAGG Rru_A2412 2813901 - 2812858 - | OmpA/MotB TERM 3051 2812994 - 2812971 - G 75 -13.8 -3.34715 | overlap 2812969 TATTGGCCGGAAACA CCCCGGCGCT CATC AGCGCCTGGG CCACCGCGTCGGCGC TERM 3052 2813252 - 2813266 + g 73 -6.4 -4.30576 | AGCCTGCGCACCGCG CTTCCT TGC AGGGAG TTTTCCTGGTGGACG TERM 3053 2813327 - 2813295 - G 73 -15.5 -2.52464 | CGCCGGCGGAATCGA TGACCACCGTTCCCG ATC CGGGGACGGCGGGCA TCGCCGGTGCCTCGG Rru_A2413 2814198 - 2815994 + | Poly(R)-hydroxyalkanoic acid synthase, class I TERM 3054 2816039 - 2816069 + F 100 -18.3 -5.06414 | ATGAGTCACACTCGG CGCCCGGATGGCT GACAA GGCCGTCCGGGCG TTTTTCTTAAACGGG Rru_A2414 2816096 - 2816422 + | hypothetical protein TERM 3055 2816450 - 2816434 - f 78 -6.5 -4.58395 | opp_overlap 2816440, overlap 2816437 2816438 CTGAGCGTCTAAAAA GAACCGG CCG CCGTTTC GGTCGACTCCTTGAA Rru_A2415 2816564 - 2816734 + | hypothetical protein Rru_A2416 2816727 - 2817098 + | hypothetical protein TERM 3056 2817107 - 2817130 + T 100 -12.4 -5.83822 | opp_overlap 2817107 CCGTTGATAGCAAAA GGCCCCCG AAGATCCC CGGGGGCC TTTTTTTTCAGTATC TERM 3057 2817130 - 2817107 - T 100 -13.8 -4.34402 | opp_overlap 2817107 CCGTTGATAGCAAAA GGCCCCCGAA GATC CCCGGGGGCC TTTTTTTTCAGTATC Rru_A2417 2817947 - 2817159 - | lipoprotein YaeC Rru_A2418 2818674 - 2818003 - | binding-protein dependent transport system inner membrane protein Rru_A2419 2819443 - 2818667 - | ABC transporter component TERM 3058 2819495 - 2819472 - R 100 -10.9 -5.74122 | opp_overlap 2819471 2819489 CACGACACAAAAAAA CCGCCACGG CTGTTT CCGAGGCGG TCGTGCGGGAAGGAA Rru_A2420 2820236 - 2819667 - | hexapaptide repeat-containing transferase TERM 3059 2820284 - 2820264 - R 100 -16.1 -4.8622 | opp_overlap 2820264 TTCTTCAATGAAAAA GGGGCGCCC GAC GGACGCCCC TTATGTCGCTCAGGG TERM 3060 2820264 - 2820284 + r 86 -13.9 -3.51924 | opp_overlap 2820264 TTCTTCAATGAAAAA GGGGCGCCC GAC GGACGCCCC TTATGTCGCTCAGGG Rru_A2421 2821352 - 2820294 - | N-acetyl-gamma-glutamyl-phosphate reductase Rru_A2422 2821552 - 2822670 + | hypothetical protein Rru_A2423 2823912 - 2822725 - | aminotransferase TERM 3061 2823864 - 2823844 - G 70 -8.2 -3.99324 | opp_overlap 2823853 2823854, overlap 2823855 GTCCATCACGATAAA CGGCGGAA TAAGG CCCCGCCG GGCCACTTTCAAAGC Rru_A2424 2825175 - 2823946 - | gamma-glutamyltranspeptidase TERM 3062 2824404 - 2824366 - G 70 -8.7 -3.96148 | gap 2, opp_overlap 2824380, overlap 2824335 2824333 GTCGGCCACGACAAA GCCGGTGG--CGCCCGGCG CCG CGCCGCCCGATCCCCCGGC GGCGCCCGGGGTGGT TERM 3063 2825232 - 2825207 - H 72 -13.9 -2.50252 | opp_overlap 2825212, overlap 2825193 2825206 2825204 2825202 ACGGCCAGAACAGAC CGGCGGGCGCG TTGA CGGACCCGCCG CCGCCCCTTAGCTTG TERM 3064 2825434 - 2825410 - g 75 -7.1 -4.35524 | overlap 2825412 2825413 2825415 CGCGGAAATCGAAAA TACCATCGCGA TGA TCGCGACGCCA CTGTTGCGCGCGGCG TERM 3065 2825463 - 2825412 - g 71 -9.5 -3.78026 | gap 2, overlap 2825410 2825413 2825415 CGGAAATCGAAAATA CCATCG-CGATGATCGCGACGC-CA CTGT TGCGCGCGGCGAGCATCGGCGATCG GGCCATCACCTTCCG Rru_A2425 2825285 - 2826658 + | peptidase M48 TERM 3066 2826786 - 2826823 + G 83 -14 -3.85864 | AGAGCTGATCGTGCG GGCCCTGCACCTGCCC ATTCCC GGGCCGGTGCTCGGCC TTCTTCTGCTGCTCG Rru_A2426 2826694 - 2827110 + | LrgA TERM 3067 2827249 - 2827263 + G 81 -5.6 -4.81852 | ATCCGCTGGTCAATC CGGTGG CCA TCGCCG TTTTGTTGCTTGTCG Rru_A2427 2827107 - 2827832 + | LrgB-like protein Rru_A2428 2827930 - 2828697 + | DSBA oxidoreductase TERM 3068 2828695 - 2828752 + F 100 -14.2 -4.66163 | gap 2, opp_overlap 2828698 2828699, overlap 2828699 2828703 GCCCGCAGCGGGAAA TAAGGCGACGCTCCACCGTCCGCACCCC TCAT GGGGA-CGGACGGTGG-GCGTTCCTTGA TTTTTCCCTAAACGT TERM 3069 2828748 - 2828698 - f 100 -17 -3.92542 | gap 3, opp_overlap 2828695 2828699 2828703, overlap 2828699 CGCAGCGGGAAATAA GGCGACGCTCCACCGTCCGCACCCC TCAT GGGG-ACGGACGGTGG-GCGTT-CC TTGATTTTTCCCTAA TERM 3070 2828748 - 2828699 - f 85 -17.2 -2.95204 | gap 2, opp_overlap 2828695 2828699 2828703, overlap 2828698 GCAGCGGGAAATAAG GCGACGCTCCACCGTCCGCACCCC TCAT GGGG-ACGGACGGTGG-GCGTTCC TTGATTTTTCCCTAA TERM 3071 2828699 - 2828748 + F 100 -17.2 -3.83042 | gap 2, opp_overlap 2828698 2828699, overlap 2828695 2828703 GCAGCGGGAAATAAG GCGACGCTCCACCGTCCGCACCCC TCAT GGGGA-CGGACGGTGG-GCGTTCC TTGATTTTTCCCTAA TERM 3072 2828703 - 2828744 + F 100 -18.8 -3.57457 | gap 2, opp_overlap 2828698 2828699, overlap 2828699 2828695 CGGGAAATAAGGCGA CGCTCCACCGTCCGCACCCC TCAT GGGGA-CGGACGGTGG-GCG TTCCTTGATTTTTCC Rru_A2429 2828855 - 2829139 + | plasmid maintenance system killer TERM 3073 2829439 - 2829408 - g 78 -15.2 -3.24747 | GTCGCAGATCATCAA CGGCCATGTCGG CATCACCC CCGACACGGCCG TGCGCCTTGGCGAAG Rru_A2430 2829268 - 2829594 + | plasmid maintenance system antidote protein Rru_A2431 2830937 - 2829609 - | hypothetical protein TERM 3074 2830990 - 2830964 - R 78 -13.6 -3.24365 | overlap 2830962 2830965 CGACATGTCACAAGA CCCCGCCCGCCG GAG CGGCGCGCGGAA CAGCCTTGGAAATGG TERM 3075 2830989 - 2830965 - R 76 -14.9 -2.54298 | overlap 2830964 2830962 GACATGTCACAAGAC CCCGCCCGCCG GAG CGGCGCGCGGA ACAGCCTTGGAAATG TERM 3076 2831126 - 2831091 - R 100 -22 -4.30576 | gap 1, overlap 2831092 2831093 2831110 TCGTCAGGATCAAAA CGCCGATGGGGCGGCAA AAC CTGCCGCCCCATCGG-G TAAAAACGACCGGCT TERM 3077 2831126 - 2831092 - R 100 -22.2 -3.18024 | overlap 2831091 2831093 2831110 CGTCAGGATCAAAAC GCCGATGGGGCGGCAA AAC CTGCCGCCCCATCGGG TAAAAACGACCGGCT TERM 3078 2831125 - 2831093 - R 100 -25.7 -2.50493 | overlap 2831091 2831092 2831110 GTCAGGATCAAAACG CCGATGGGGCGGCAA AAC CTGCCGCCCCATCGG GTAAAAACGACCGGC TERM 3079 2831186 - 2831133 - R 73 -5 -4.58395 | gap 1, overlap 2831110 2831136 CCCATCGGGTAAAAA CGA-CCGGCTTGGCGGCGGGCCTAG ATCAG CCCGGCCAGCGGCGAGGACGGATCG GCGTAGAGTTTGCGC Rru_A2432 2832142 - 2831153 - | bifunctional sulfur carrier protein/thiazole synthase protein TERM 3080 2832171 - 2832215 + H 74 -4.1 -4.82901 | gap 1 ATGGCTGTTTGTTGG GCGGGCTCTCAATC-CGGGG CGGCCC CTCCGCGAAAGCGATCCCGC TTTTTCTGGGCGGAG Rru_A2433 2832397 - 2832846 + | 3-dehydroquinate dehydratase Rru_A2434 2832904 - 2833344 + | biotin carboxyl carrier protein Rru_A2435 2833362 - 2834699 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 3081 2834733 - 2834773 + F 100 -24.8 -4.15044 | TTGATCCTATCTCCT TTGGGGACGGCCTCCCGC CGCGC GCGGGAAGCCGTCCCCGA TTTCTTGAGCGGAGC aat 2834821 - 2835462 + | leucyl/phenylalanyl-tRNA--protein transferase Rru_A2437 2835982 - 2835491 - | cellulase-like protein TERM 3082 2835796 - 2835822 + g 70 -10.9 -3.53012 | gap 1, overlap 2835806 2835808 TCAGCGACCCCAGCC GCAG-GTCGCCG CCCA CGGCGATGCTGC TTTCGCCCACCCGCG Rru_A2438 2836446 - 2835991 - | hypothetical protein Rru_A2439 2837263 - 2836448 - | hypothetical protein TERM 3083 2836712 - 2836768 + g 91 -9.2 -4.77036 | gap 1, overlap 2836708 ACCGCCGAAGGGGTC GCCGGGATCACCGG-CACCGCCGGGCG GCGG CGCCTGAGGGTGGCTGGCGGCCTTGGC TTTTTGCTGCTCGGC Rru_A2440 2837659 - 2837303 - | NADH dehydrogenase TERM 3084 2837341 - 2837359 + g 84 -17.4 -3.15544 | opp_overlap 2837326 2837325 CGCCCGTCGCCGCCG CGCGCCGG CCG CCGGCGCG TTCATCGCCATCGGG TERM 3085 2839004 - 2838994 - g 74 -2.4 -4.71426 | opp_overlap 2838994 GCGCGAGGAACAAAA GGTC GCC GCCC TGGTTTCGGGCTCCA TERM 3086 2841128 - 2841112 - g 73 -12.3 -3.39803 | overlap 2841116 CATCGATATGCACAA GGAAGGC GCC GCCTTCC GCAGCCTGATGAACA Rru_A2441 2838086 - 2841781 + | ribonucleotide-diphosphate reductase subunit alpha TERM 3087 2841834 - 2841816 - f 100 -13.1 -4.34737 | opp_overlap 2841816 GGATCAATGAAGAAA GGGCGCC GAAGG GGCGCCC TTTTTTGTAGGGGGA TERM 3088 2841816 - 2841834 + F 100 -13.1 -5.24129 | opp_overlap 2841816 GGATCAATGAAGAAA GGGCGCC GAAGG GGCGCCC TTTTTTGTAGGGGGA Rru_A2442 2841918 - 2842178 + | XRE family transcriptional regulator TERM 3089 2842199 - 2842211 + G 70 -6.2 -4.25104 | opp_overlap 2842196 2842198 CGTCCGCACCAAGAG CCGC CGCTC GCGG TTTTCCTGAACAGCC Rru_A2443 2842178 - 2843485 + | HipA protein Rru_A2444 2843626 - 2844279 + | TetR family transcriptional regulator TERM 3090 2844542 - 2844577 + G 77 -13.2 -3.54741 | gap 1, overlap 2844543 TTGCGCTACGATGTC AGCGGCCTGGGCCGCTG GGA CAGCG-CCCTGGTCGCC TTTGCCCGGATGATG TERM 3091 2844543 - 2844576 + G 77 -16.7 -2.7263 | gap 1, overlap 2844542 TGCGCTACGATGTCA GCGGCCTGGGCCGCTG GGA CAGCG-CCCTGGTCGC CTTTGCCCGGATGAT Rru_A2445 2844353 - 2845522 + | hypothetical protein TERM 3092 2845978 - 2845955 - g 70 -6.6 -4.18018 | overlap 2845956 CGGCGGGACCCAAAA TGCCCGCCGA GCTG TCGGGCGGCA TGCGCAAACGGGCGG Rru_A2446 2845525 - 2846319 + | ABC transporter component TERM 3093 2846411 - 2846435 + G 75 -11.4 -3.68569 | CGGCCAGCGCCTGTT CACCTCCACC CGCGA GGTGGTGGTG TTCTTCAATGAATCG Rru_A2447 2846316 - 2847287 + | hypothetical protein Rru_A2448 2847284 - 2847889 + | hypothetical protein Rru_A2449 2848123 - 2847893 - | hypothetical protein TERM 3094 2848451 - 2848437 - g 86 -8.5 -4.80167 | CATCAAAAAGGAAAA GCCGG TTCTG CCGGC CGGCAACGCCTATAC TERM 3095 2848848 - 2848864 + G 86 -6.5 -5.08824 | overlap 2848849 CACCCACGAATCCGA AGCCGAT GAG ATCGGCC TTTTTTACATGGCGC TERM 3096 2848849 - 2848863 + G 70 -10 -3.64812 | overlap 2848848 ACCCACGAATCCGAA GCCGAT GAG ATCGGC CTTTTTTACATGGCG Rru_A2450 2848264 - 2849058 + | peptidase M48, Ste24p TERM 3097 2849132 - 2849122 - f 76 -6.8 -4.56597 | TTTTTCTCTGAAAAA GGGT GCG ACCC GTCAGAATCTGGGGG TERM 3098 2849972 - 2849936 - g 72 -7.1 -4.19506 | AGCGCAACCGCAAAA CCGTGAGCCATCCCGGC GCG GCAGGCATGACCCCCAG AGCCTTCCATGGCGG Rru_A2451 2849230 - 2850093 + | diguanylate cyclase TERM 3099 2850232 - 2850288 + F 79 -15.3 -2.87132 | gap 1, opp_overlap 2850221 2850246, overlap 2850246 TCAATTCCGACGCCC GCCCGCGGGAACAAGCCATCAAGGTG TTTCGT CGC-TTGATGGCTTGTTCCCGGGGAA TCTCTCGAGAAACGC Rru_A2452 2850270 - 2851226 + | hypothetical protein TERM 3100 2851260 - 2851310 + F 100 -21.9 -3.0806 | gap 1 CAAGGACGCCAATCT TC-CCTCACCCCTTCCCCTCCGCC TTCG GGCGGCGGGGAATGGGGGAGGCGA TGTTGGCGGTTTGCA Rru_A2453 2851537 - 2852778 + | membrane anion transport protein TERM 3101 2852837 - 2852849 + F 80 -3.3 -5.0538 | overlap 2852838 CCTTTTTCACGGACC ATCCG GGG CGGAG TTTTTTCAGATGACG Rru_A2454 2852859 - 2853830 + | hypothetical protein TERM 3102 2854204 - 2854187 - f 91 -7.7 -4.72846 | gap 1, overlap 2854188 2854189 2854191 GCAGACAGGCAAAAA CGGACCGG AAA CCGGTC-G AGGAGGATTTCATGA Rru_A2455 2854216 - 2854377 + | hypothetical protein TERM 3103 2854429 - 2854466 + T 100 -14.1 -5.02476 | opp_overlap 2854436, overlap 2854432 CCTCCGCGCTGGACG CCTGAAAGCCCCGGAAC CCAA GCTCCGGGGCTTTCTTG TTTTTTCAAGGCTCT TERM 3104 2854432 - 2854463 + T 100 -18.8 -4.61482 | opp_overlap 2854436, overlap 2854429 CCGCGCTGGACGCCT GAAAGCCCCGGAAC CCAA GCTCCGGGGCTTTC TTGTTTTTTCAAGGC TERM 3105 2854459 - 2854436 - T 93 -16 -3.55444 | opp_overlap 2854432 2854429 GCTGGACGCCTGAAA GCCCCGGAAC CCAA GCTCCGGGGC TTTCTTGTTTTTTCA Rru_A2456 2855735 - 2854500 - | D-3-phosphoglycerate dehydrogenase Rru_A2457 2855844 - 2856305 + | endoribonuclease L-PSP TERM 3106 2857487 - 2857499 + G 74 -10.5 -3.85698 | TACCGGTTTTCGCCG GGCGG TGG CCGCC TTTGTCGAGCGCGAG Rru_A2458 2856318 - 2857589 + | hypothetical protein TERM 3107 2857810 - 2857829 + G 73 -12.8 -3.44998 | opp_overlap 2857806 2857807, overlap 2857808 CTTGATCGAAACGCC CCGGGGCG CCCT CGCCCTGG TCTTGTTGCTCGATC Rru_A2459 2857586 - 2858191 + | hypothetical protein TERM 3108 2858253 - 2858220 - f 77 -14.5 -2.78384 | overlap 2858199 2858198 2858237 GCGCTCTGCATCAGA GCGCAGTGCGGGGAC AAGG GTCCCCCCACCCCGC CCTAACCGACTTCGC TERM 3109 2858357 - 2858386 + F 89 -16.6 -3.25823 | opp_overlap 2858361, overlap 2858361 2858378 CCGCCTTCGGCCGAA GAAACCGCCTTG CCGTTA CAAGGCGGTTTC TTCCTATGGGGAGAA TERM 3110 2858382 - 2858361 - f 95 -12.3 -4.15044 | opp_overlap 2858357 2858361 2858378 CTTCGGCCGAAGAAA CCGCCTTGC CGTT ACAAGGCGG TTTCTTCCTATGGGG TERM 3111 2858361 - 2858382 + F 93 -11.6 -4.29106 | opp_overlap 2858361, overlap 2858357 2858378 CTTCGGCCGAAGAAA CCGCCTTG CCGTTA CAAGGCGG TTTCTTCCTATGGGG Rru_A2460 2858694 - 2860391 + | chemotaxis sensory transducer TERM 3112 2860465 - 2860429 - f 72 -11.6 -3.29324 | gap 2, overlap 2860424 TGCATGGAAATCCAA CCTCAGGGTGACCGTCCC CCC GGG-CGGTCACCCCC-GG ATCCGCACCCGAAAA Rru_A2461 2860519 - 2861190 + | CHAP TERM 3113 2861221 - 2861239 + T 100 -13.1 -4.48987 | CGATCCCACTGCCAA GGCGCCG TTTTT CGGCGCC TTTTGCTTATCAAGG Rru_A2462 2862418 - 2861249 - | carboxylate-amine ligase TERM 3114 2861463 - 2861449 - G 72 -7 -4.16943 | overlap 2861450 CCTGACAGCCGAAAA CCGCCG CAT CGGGGG CGATCAGCTCAAGCA Rru_A2463 2863288 - 2862473 - | N-formylglutamate amidohydrolase TERM 3115 2862772 - 2862758 - G 74 -5.6 -4.55295 | opp_overlap 2862759 GTGGTTATAAAGAAA CCCCAG ATG CCAGGG TCGTTCCACGCCGCC TERM 3116 2863365 - 2863380 + H 75 -8.2 -4.14392 | overlap 2863366 CGAAAAGCCACCCTT TGCCCG GACT CGGGCG TTTTGGCGCTTGAAC Rru_A2464 2863425 - 2864690 + | hydroxypyruvate reductase Rru_A2465 2864811 - 2866247 + | pyruvate kinase Rru_A2466 2866351 - 2866791 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3117 2866885 - 2866827 - T 100 -30.7 -2.71712 | gap 1, opp_overlap 2866835, overlap 2866835 TCGCCGGGGGGAAAC GCCA-AAAAGCCGCGTCCGGATCTTTCC TTGG GGGAAGATCCGGACGCGGCTTTTATAGC ATAAGCTCAGAGGCG TERM 3118 2866876 - 2866835 - T 100 -28.9 -4.70879 | opp_overlap 2866835, overlap 2866827 GGGAAACGCCAAAAA GCCGCGTCCGGATCTTTCC TTGG GGGAAGATCCGGACGCGGC TTTTATAGCATAAGC TERM 3119 2866835 - 2866876 + T 100 -31.1 -4.4009 | opp_overlap 2866827 2866835 GGGAAACGCCAAAAA GCCGCGTCCGGATCTTTCC TTGG GGGAAGATCCGGACGCGGC TTTTATAGCATAAGC Rru_A2467 2867100 - 2866924 - | 50S ribosomal protein L36P Rru_A2468 2867356 - 2867643 + | hypothetical protein TERM 3120 2867681 - 2867655 - f 75 -2.3 -4.91712 | gap 1, overlap 2867679 TTGAACGGATAAAAA CGATGCTTCTTG GTGA CATGAAG-ACCG GCGACCAGGGACGCG Rru_A2469 2867657 - 2867902 + | hypothetical protein TERM 3121 2867918 - 2867937 + F 76 -12.1 -3.28712 | CCCGATCGCGCACCG GGGGCCC CTTCCC GGGCCCC TTGTCCCGACCCCGC TERM 3122 2868119 - 2868106 - g 74 -2.3 -4.83615 | overlap 2868107 2868108 CACCGTTGAGAAAAA GGTCG GCGC CTACC GCCACGGCGGCGAAG Rru_A2470 2867984 - 2870344 + | ferrous iron transport protein B Rru_A2471 2870412 - 2870693 + | hypothetical protein TERM 3123 2870753 - 2870709 - T 100 -15.9 -4.56597 | opp_overlap 2870713 2870718 2870741, overlap 2870713 2870718 TGCGGGCGTTAAAAA GAGAGCAAACGGCGTTAAAGG ATC CCTTTAACGCCGTTTTCTTTA GGGATCGGCTTATTT TERM 3124 2870749 - 2870713 - T 100 -21.1 -3.53855 | opp_overlap 2870713 2870718 2870741, overlap 2870709 2870718 GGCGTTAAAAAGAGA GCAAACGGCGTTAAAGG ATC CCTTTAACGCCGTTTTC TTTAGGGATCGGCTT TERM 3125 2870713 - 2870749 + T 100 -21.1 -3.5764 | opp_overlap 2870713 2870709 2870718, overlap 2870718 2870741 GGCGTTAAAAAGAGA GCAAACGGCGTTAAAGG ATC CCTTTAACGCCGTTTTC TTTAGGGATCGGCTT TERM 3126 2870744 - 2870718 - T 100 -19.6 -4.02999 | opp_overlap 2870713 2870718 2870741, overlap 2870713 2870709 TAAAAAGAGAGCAAA CGGCGTTAAAGG ATC CCTTTAACGCCG TTTTCTTTAGGGATC TERM 3127 2870718 - 2870744 + T 100 -19.6 -4.87803 | opp_overlap 2870718 2870713 2870709, overlap 2870713 2870741 TAAAAAGAGAGCAAA CGGCGTTAAAGG ATC CCTTTAACGCCG TTTTCTTTAGGGATC Rru_A2472 2871395 - 2870763 - | hypothetical protein TERM 3128 2872360 - 2872370 + G 85 -5.4 -5.00616 | overlap 2872336 GTTCTGGGATCGGAT CGAA GGC TTCG TTTTTTCGCCCGGAA TERM 3129 2873200 - 2873233 + G 74 -2.1 -4.72986 | opp_overlap 2873184, overlap 2873203 2873224 2873224 CCTGGGGGGAAGCTT GGCCGTGCACAGCCC CCCC GGTCAGGGCGCGATC TTTTTGATAAGGGTC Rru_A2473 2871629 - 2873281 + | PAS/PAC sensor Signal transduction histidine kinase Rru_A2474 2873323 - 2874900 + | extracellular solute-binding protein TERM 3130 2874990 - 2875017 + F 75 -8.2 -4.19177 | opp_overlap 2874967, overlap 2874991 2875002 TCGCCGACCCCAGCG GCGCCCGCCCGG GAAA CCGGGAAGGCGG TTTATCTTCGCCAAT TERM 3131 2875271 - 2875281 + G 77 -5.4 -4.59773 | GATTGCCGTCAAAGG CCTT TAC AAGG TTTTTGGCGATACCC Rru_A2475 2875245 - 2876444 + | glycine betaine/L-proline transport ATP-binding subunit TERM 3132 2876496 - 2876538 + G 72 -13.2 -3.17075 | opp_overlap 2876492, overlap 2876479 CCCCGCCGAAACGCC GGCCGGCGATTGGCTGGGGG GCG CCTCCGCTCCGCCGCCGGCC TTCGATTGGGCCGAC Rru_A2476 2876437 - 2877510 + | binding-protein dependent transport system inner membrane protein proX 2877507 - 2878538 + | glycine betaine transporter periplasmic subunit TERM 3133 2878549 - 2878602 + T 74 -12.6 -3.21099 | gap 3, opp_overlap 2878561 2878601, overlap 2878551 ATTAAGCCCAGGCCA GCCCTTTAGATACGGTGCGC-GGGACC CAT GGTCCCCGCGTACCGC-TCTAA-GAGC TTGATCGTGAAGCAA TERM 3134 2878592 - 2878561 - T 85 -16.6 -2.87564 | gap 1, opp_overlap 2878551 2878549 CCAGCCCTTTAGATA CGGTGCGC-GGGACC CAT GGTCCCCGCGTACCG CTCTAAGAGCTTGAT TERM 3135 2878653 - 2878619 - T 100 -25.2 -3.91084 | opp_overlap 2878619 TGATCGTGAAGCAAA TCGTCGCCGCACTCTG GAC CAGAATGCGGCGACGA TTTTATTTAGTCCGC TERM 3136 2878619 - 2878653 + T 100 -23 -4.93877 | opp_overlap 2878619 TGATCGTGAAGCAAA TCGTCGCCGCACTCTG GAC CAGAATGCGGCGACGA TTTTATTTAGTCCGC Rru_A2478 2879661 - 2878660 - | arginine/ornithine transport system ATPase TERM 3137 2878848 - 2878896 + g 71 -12.4 -3.28785 | gap 2, overlap 2878844 2878849 2878882 CTACCTGTTGGGCGC G-GCGGCGCTCGGCCA-GGGCGCC ATT GGCGTCCATGATCGAGCGGTGCTC TTCGATCTTTTGCCA TERM 3138 2878849 - 2878894 + g 81 -16.1 -3.20387 | gap 1, overlap 2878848 2878844 2878882 TACCTGTTGGGCGCG GCGGCGCTCGGCCA-GGGCGCC ATT GGCGTCCATGATCGAGCGGTGC TCTTCGATCTTTTGC TERM 3139 2879189 - 2879153 - G 79 -7.2 -4.59944 | gap 1, opp_overlap 2879178, overlap 2879154 AGCACCAGAAAGAAA TCGACCATGCCGGCGAC CAGG GTCTCCGAC-TGGCCGG TGCCGACGGTTTCCA TERM 3140 2879730 - 2879688 - R 77 -11.8 -3.59627 | opp_overlap 2879679 2879678 2879710 2879721, overlap 2879679 2879690 ACCAAAGGGGGGAAA GATCCCGCCCGTTCCTTTCG CTG CGCGCGGAACGGGCGGGAAA CGACGGTTACGCGGC TERM 3141 2879728 - 2879690 - R 95 -18.8 -3.37283 | opp_overlap 2879679 2879678 2879710 2879721, overlap 2879679 2879688 CAAAGGGGGGAAAGA TCCCGCCCGTTCCTTTCG CTG CGCGCGGAACGGGCGGGA AACGACGGTTACGCG Rru_A2479 2881935 - 2879737 - | methylmalonyl-CoA mutase TERM 3142 2880954 - 2880971 + g 77 -7.7 -4.35926 | overlap 2880950 GGCAATGGGTGCGCA GCGACAG CGAT TTGTCGC TTTTGGGTTTGAAGT Rru_A2480 2884028 - 2881932 - | methylmalonyl-CoA mutase Rru_A2481 2884349 - 2884642 + | hypothetical protein Rru_A2482 2884644 - 2885027 + | transcription regulator Rru_A2483 2885144 - 2886682 + | 5'-nucleotidase TERM 3143 2886660 - 2886688 + F 76 -10.3 -3.74178 | overlap 2886644 2886649 2886652 GCGCCCAGATCGAGG GGCGGCTGGTTTT GCG AAAGTAAGCCGCC TTTGGCCTTTGGTTA TERM 3144 2887217 - 2887173 - g 85 -5.8 -5.00616 | gap 3, overlap 2887174 2887176 CCGCCGCCGAAAAAA CCATCGCC-ACCGCCCGCGCC AATCAG GGCGC-AACGATTGGCGA-GG CGCAACGCCAGATCT TERM 3145 2887764 - 2887731 - g 81 -12.3 -3.84451 | overlap 2887732 2887734 GCGCCGAAATGGAAA CGACCGCCGGCGGCC TCTC GGCCACCGCCGACCA GACCAATATCCAGGC Rru_A2484 2886794 - 2888485 + | chemotaxis sensory transducer TERM 3146 2888492 - 2888526 + F 76 -15 -2.52464 | GCCGCCTGATCCCCC CGGGGGGGCGCT CCCTGAGCCTT GGCGCCCCCCCG TCGCTTCCGCCCGAC TERM 3147 2889455 - 2889472 + G 78 -6.3 -4.58663 | gap 1 TTATTCCAAGGGCCT GCC-CGAA CGC TTCGAGGC TTTTTCGCGCCTGCT Rru_A2485 2888640 - 2890022 + | Alpha,alpha-trehalose-phosphate synthase (UDP-forming) Rru_A2486 2890015 - 2890989 + | glucokinase Rru_A2487 2892236 - 2890986 - | BsuBIPstI restriction endonuclease-like TERM 3148 2891535 - 2891493 - G 77 -13.2 -3.53012 | CTCGCCGCTGGGAAA GCGCACCAGCACCCCCTCGG CCC CGGCGGTGGCGCCAGCGCGC ATGATCGCCACGCGG Rru_A2488 2894053 - 2892239 - | putative RNA methylase TERM 3149 2892564 - 2892531 - G 77 -7.9 -4.36914 | opp_overlap 2892529 2892532 2892558, overlap 2892532 TGGCCGGCGACAAAA GCCGCGGGCAGTTCG GCGG CGATCAGCCGGCGGT GCTGTTCCTTGGCGG TERM 3150 2892697 - 2892686 - G 79 -7.2 -4.64861 | overlap 2892687 2892688 GGCGCGGAAAACAAA GCGG CCGT CCGC CGTGACCGCCTCGGC TERM 3151 2893669 - 2893655 - G 83 -12.8 -4.07885 | GATCGGCGTGTAAAA GGCGCC CAG GGCGCC GCGCTCGCGGGCGGG TERM 3152 2894493 - 2894460 - g 95 -10.9 -4.48987 | gap 1 CGCCGATAATCAAAA CAGC-CTGACCGCCGG ACC CCGGGGGCCGGTGCTG CTGCAGGATTATCAG Rru_A2489 2894407 - 2895861 + | catalase TERM 3153 2895892 - 2895915 + T 100 -13.8 -4.63218 | opp_overlap 2895895 CACCACCATCTCAAG GGAGCGACCC GCCC GGGCCGCTCC TTTTCTTAGCGGAAA Rru_A2490 2896664 - 2895921 - | AraC family transcriptional regulator TERM 3154 2896102 - 2896157 + g 72 -13 -3.14132 | AAGGTCAGCCCGCAG TCGGCGCGGAAGGTCCGGGCCAGGGT GCGG GCCGAGGCCCCGGCCTCGCGCGCCCA TTCCTCAAGCGGCCG TERM 3155 2896841 - 2896852 + G 77 -3.6 -4.79223 | GGTATCGATCCGCGC GGTC CCGA GGCC TTTTTGCTGCTGTCG TERM 3156 2896860 - 2896888 + G 74 -7.4 -4.19238 | gap 1, overlap 2896861 CCGAGGCCTTTTTGC TGCTGTCGGC-GG CGGC CCAGCCGGTAGCG TTTTCCACTTGGCAG TERM 3157 2897644 - 2897660 + G 72 -7.2 -4.27617 | opp_overlap 2897644 TTTGAGCCTGGAATA CGCCGG GCTGA TCGGCG TTTTCGTCGCCTATG Rru_A2491 2896793 - 2898010 + | major facilitator transporter Rru_A2492 2899133 - 2898018 - | glycosyl transferase, group 1 TERM 3158 2898153 - 2898180 + g 79 -16.2 -3.01712 | GCTCAGCAGGCGCCA CAGTCCGGCCGC CAGG GCGGCCGGGCGG TCTTCGCCGCCAACC TERM 3159 2898287 - 2898252 - G 72 -13.2 -3.17763 | gap 1 GGGACAGTCGATGAA GCCGA-TCGCCGGCCGC CCG GCGGCCATCGCCTCGGC GATCACCAGACCGAA TERM 3160 2898561 - 2898537 - G 72 -11.4 -3.53012 | overlap 2898552 CTTGGCCTCGTCAAA GCGGCCGATC GACAA GATCCGCCGC GCCGGCCGCCCGGGC Rru_A2493 2900191 - 2899130 - | glycosyl transferase, group 1 Rru_A2494 2901245 - 2900277 - | glycosyl transferase family protein TERM 3161 2900969 - 2900955 - G 77 -5.6 -4.58395 | overlap 2900965 2900966 GTCATCGTCGAAAAA GGCGAT GAA AGCGCC CTTGGCGGCGCTCAG Rru_A2495 2902219 - 2901242 - | glycosyl transferase family protein TERM 3162 2901949 - 2901935 - G 79 -7.1 -4.68593 | opp_overlap 2901935 GTCATCATCGAAAAA GGCGA TCACC TCGCC TTTGGCTTCGGCGAG TERM 3163 2901969 - 2901995 + g 85 -7.9 -4.82901 | gap 1, overlap 2901968 GCTTCGGCGAGCAAG CGGTTGCG-CGC CTGG GCGACGCCGCCG TTTTTATCAAGGGCG Rru_A2496 2903487 - 2902216 - | polysaccharide biosynthesis protein TERM 3164 2903431 - 2903452 + g 70 -2.2 -4.64861 | gap 1, overlap 2903409 GACGCTGATCGCCGT CGCGC-CGT AATTG ACGAGCACG TTTCTTTTGAAGCGC TERM 3165 2903554 - 2903507 - R 100 -13.2 -4.62069 | opp_overlap 2903507 2903505 2903513 2903519, overlap 2903516 TGCGGATCCGAAAAA GGGAAGGAACGCGGCGGGGACC GGCG GGCCCCCGCCCCGTCACACCGC CTGTTCTTTGGTCTT TERM 3166 2903545 - 2903516 - R 100 -18.5 -3.47011 | opp_overlap 2903507 2903505 2903513 2903519, overlap 2903507 GAAAAAGGGAAGGAA CGCGGCGGGGACC GGCG GGCCCCCGCCCCG TCACACCGCCTGTTC Rru_A2497 2905138 - 2903546 - | peptide chain release factor 3 TERM 3167 2903797 - 2903761 - G 77 -5.7 -4.65916 | TCGATTCGAACAAAA CCGGCACATCGAATTCG GTG CGGATGCGATCGGCCAG AACCTCGAACTGCAA TERM 3168 2905781 - 2905741 - g 81 -11.1 -4.07568 | gap 1, opp_overlap 2905747 GTCGGTGGCCGAAAA CCTCGCCCTGCATGGCCG GCTTTA CGGCC-TGTCGGGCAAGG CCCTGGCCGCCCGAC TERM 3169 2905949 - 2905969 + G 77 -10.3 -3.92373 | CCGACCAGCGGTCTT GATCCGGCG GCG CGCCGGGCC TTTCTCGATGCCCTG TERM 3170 2906315 - 2906344 + G 72 -13.5 -3.15544 | opp_overlap 2906310 2906311 2906313, overlap 2906317 GATATCCAAAGCATC GCCGTCCGCCAGC CGAC GCTGGAGGACGTC TTCATCCACATCACC TERM 3171 2906317 - 2906342 + G 76 -14.7 -3.14051 | opp_overlap 2906310 2906311 2906313, overlap 2906315 TATCCAAAGCATCGC CGTCCGCCAGC CGAC GCTGGAGGACG TCTTCATCCACATCA Rru_A2498 2905442 - 2906425 + | ABC transporter component TERM 3172 2906530 - 2906556 + G 70 -11.5 -3.42459 | overlap 2906531 2906551 GTGCGCCAGCCCGCC CGGCTGGCCGG CTCGA TCGGCCAGCCC TTGCTGTTCTGGCTG TERM 3173 2906531 - 2906555 + G 71 -15 -2.64993 | overlap 2906530 2906551 TGCGCCAGCCCGCCC GGCTGGCCGG CTCGA TCGGCCAGCC CTTGCTGTTCTGGCT Rru_A2499 2906422 - 2907252 + | ABC-2 transporter component Rru_A2500 2907417 - 2907977 + | rhodanese-like protein TERM 3174 2908120 - 2908103 - f 76 -10.5 -3.79906 | TTAGTTCTATAAGAA GGCCCCC TAAA GGGGACC CGATGGGAGAGACCG Rru_A2501 2908139 - 2908660 + | hypothetical protein Rru_A2502 2908807 - 2909265 + | hypothetical protein Rru_A2503 2910040 - 2909246 - | hydroxypyruvate isomerase Rru_A2504 2910313 - 2911722 + | coproporphyrinogen III oxidase TERM 3175 2911720 - 2911772 + F 79 -8.5 -4.48902 | gap 3, opp_overlap 2911750, overlap 2911721 2911727 CATTCCCGCGCCGTC T-GATCCCTGATGCCCCTCGGCCCGG GAAA CCGGGCCGA-GGG-AGCCGCGATCTA TTTCTTTCGATATAT TERM 3176 2911721 - 2911770 + F 91 -13.6 -3.84346 | gap 2, opp_overlap 2911750, overlap 2911720 2911727 ATTCCCGCGCCGTCT GATCCCTGATGCCCCTCGGCCCGG GAAA CCGGGCCGA-GGG-AGCCGCGATC TATTTCTTTCGATAT TERM 3177 2911727 - 2911767 + F 83 -16.8 -2.68607 | gap 1, opp_overlap 2911750, overlap 2911721 2911720 GCGCCGTCTGATCCC TGATGC-CCCTCGGCCCGG GAAA CCGGGCCGAGGGAGCCGCG ATCTATTTCTTTCGA TERM 3178 2912042 - 2912098 + G 91 -11.4 -4.183 | opp_overlap 2912036 TGCCATCAAGCCGGC CTGCTTG-CCGCGGGCGTCGACCGCGGC GAC GGCGCGG-CGATGGCGGCGGGCGCGCGG TTTCTTCAGGATTAC Rru_A2505 2911919 - 2912869 + | response regulator receiver domain-containing protein Rru_A2506 2913648 - 2912866 - | enoyl-CoA hydratase / short chain enoyl-CoA hydratase Rru_A2507 2913867 - 2914550 + | orotate phosphoribosyltransferase TERM 3179 2914646 - 2914614 - f 93 -15.6 -3.53343 | gap 1, opp_overlap 2914609 2914617 2914627, overlap 2914602 2914615 AATCCGCTCCGCAAA CCG-GGCGACTCGGC GGCG GCCGAGTCGCCGCCG CCCCTCGCGCTAGCC TERM 3180 2914643 - 2914615 - f 84 -16.8 -2.71791 | gap 1, opp_overlap 2914609 2914617 2914627, overlap 2914602 2914614 ATCCGCTCCGCAAAC CGGGCGACTCGGC GGCG GCCGAGTCGC-CG CCGCCCCTCGCGCTA Rru_A2508 2915085 - 2916299 + | 5-aminolevulinate synthase TERM 3181 2916374 - 2916346 - f 79 -16 -2.70932 | opp_overlap 2916347 CCCGCTTGCCAAGCA CCCCCTCCTCCC CTTGT GGGAGGAGGGGT TTTTCTTTGCCTGGA TERM 3182 2916347 - 2916373 + F 100 -19.5 -5.30616 | opp_overlap 2916346 CCGCTTGCCAAGCAC CCCCTCCTCCC CTTGT GGGAGGAGGGG TTTTTCTTTGCCTGG TERM 3183 2916420 - 2916410 - f 73 -4.6 -4.72272 | overlap 2916411 CGGTCCGAGCAAAAA CGGG GTC CCCA TCGCCCCACCGGCCC Rru_A2509 2916494 - 2917426 + | fructose-bisphosphate aldolase TERM 3184 2917431 - 2917417 - f 81 -5 -4.89852 | CGACATTTACAAAAA GAAACC CTG AGTTTC GTATCCTCACGCCGT TERM 3185 2918069 - 2918039 - g 79 -11.2 -3.89614 | opp_overlap 2918030 2918055 TGCAATGGCTAGAAA GCCTCGCCTCG-CG TATGG CGACG-GGCGAGGC GGCCTGACCTTTTCC Rru_A2510 2917522 - 2918076 + | hypothetical protein TERM 3186 2918105 - 2918132 + F 100 -12 -5.93809 | gap 1 CGTCTTTTGGTGAAT GCGGCCGGCGG CTCCCCT CC-CCGGCCGC TTTTTTTTGTCGCCC TERM 3187 2919544 - 2919566 + G 80 -9.2 -4.2828 | CATGCGCCACTGGGT GATCGACAAA CCC TTTGCCGATC TTTTCGTCGATCCCG Rru_A2511 2918246 - 2920306 + | diguanylate cyclase Rru_A2512 2921056 - 2920328 - | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 3188 2920733 - 2920721 - G 70 -4.1 -4.57073 | overlap 2920723 CAGGGGGGCGAAAAA GTTCA GCT CGAAC ACCTCGCGCCAGCGG Rru_A2513 2922642 - 2921203 - | Acetyl-CoA hydrolase/transferase TERM 3189 2922670 - 2922650 - R 71 -8.9 -3.84451 | overlap 2922628 2922651 GCCCGCAAAGGGAAA CCCCCACCG TCC CGGCGGAGA AAAGCCGCAAAATAA TERM 3190 2922704 - 2922691 - R 100 -9.5 -6.09196 | opp_overlap 2922691 2922691 CGCAAAATAAAAAAA GGGCC CAAG GGCCC CTTGTCGTCCGTCGC Rru_A2514 2923344 - 2922781 - | twin-arginine translocation pathway signal TERM 3191 2923498 - 2923474 - H 75 -2.7 -4.87318 | opp_overlap 2923488 2923492, overlap 2923466 CCCAAAACGGAAAAA TCCCGGTCGTA ATT CACCCCCAGGA TGGGTTTTTCCGGGT TERM 3192 2923492 - 2923502 + H 78 -6.8 -4.64144 | opp_overlap 2923474, overlap 2923488 CGGTCGTAATTCACC CCCA GGA TGGG TTTTTCCGGGTTATT TERM 3193 2923578 - 2923591 + H 77 -3.7 -5.0133 | CGACGGAGTCCTCGT CCCCG ATTG CGGCG TTTTTTCAGCCGATG TERM 3194 2924619 - 2924629 + G 74 -2.4 -4.82901 | CGCCGACTTGTCTTC CGAG GAT CGCG TTTTTGTCGGGGGCC Rru_A2515 2923708 - 2924829 + | extracellular solute-binding protein Rru_A2516 2924856 - 2927273 + | multi-sensor Signal transduction histidine kinase TERM 3195 2927311 - 2927254 - T 95 -20.7 -2.93901 | gap 2, opp_overlap 2927254 2927295 2927296, overlap 2927252 2927294 AGCCGATCAAGGACA GCGGAGC-GGCGA-CGGCCTGACCGCC TTATCG GGCGATCAAGCCGGCCGCCAGCTCGGC CAGGGCCCGGCGGTC Rru_A2517 2928658 - 2927279 - | AMP-dependent synthetase and ligase TERM 3196 2928883 - 2928913 + G 100 -19.8 -3.23216 | GGCCTATCGCCGTCA GGTGGCGATCAAGG GTA CCTTGCTCGCCACC TTCGTGCTCGTCGCC Rru_A2518 2928767 - 2929402 + | multiple antibiotic resistance (MarC)-related proteins Rru_A2519 2929591 - 2929433 - | hypothetical protein TERM 3197 2929555 - 2929541 - G 73 -3.5 -4.59773 | gap 1, overlap 2929543 TCCGACTTGCAAAAA CACGCC AAGC GGCG-G AAGGAGGATGGCGAT TERM 3198 2931524 - 2931504 - g 71 -9 -3.82031 | overlap 2931496 GCAATGACGACGAAA CGCCGATG ACCGG CATCAGCG GCGGCGGCCTGCCGG Rru_A2520 2929751 - 2932003 + | penicillin-binding protein 1A TERM 3199 2933259 - 2933272 + G 81 -3.7 -5.03314 | GGCGACCGCACCTTG CCGGC CGTC GACGG TTTTTTGCGCATCAC TERM 3200 2933514 - 2933540 + G 77 -13.6 -3.54424 | overlap 2933515 CGGGCCCTCAGCCGC AGCCTCGCCCCC GGG GCGGGCGAGGCC TTTCAGGGCGTCCGG TERM 3201 2933515 - 2933539 + G 80 -17.1 -2.72511 | overlap 2933514 GGGCCCTCAGCCGCA GCCTCGCCCCC GGG GCGGGCGAGGC CTTTCAGGGCGTCCG TERM 3202 2933948 - 2933928 - g 83 -8.9 -4.59109 | overlap 2933912 GAGATCCGGGAAAAA CAGGCCCGC ATC GCCAGCCTG CGCGAGACCATCGCC TERM 3203 2937097 - 2937077 - g 79 -4.5 -4.82901 | overlap 2937080 CTTCCTGCACAAAAA GGACGCCGG AAC CCGGCCCGC AAACGGCGTGGCCGT Rru_A2521 2932302 - 2937395 + | DNA helicase, putative Rru_A2522 2938040 - 2937429 - | hypothetical protein Rru_A2523 2938191 - 2938598 + | transcriptional regulator TERM 3204 2938640 - 2938603 - T 100 -21.3 -4.72272 | overlap 2938553 GGCGGCCATGAAAAA GGACCGGACGGCGCTCC GTTG GGAACGCCCTCCGGCCC TTACCGTCAGGTGCG Rru_A2524 2939558 - 2938656 - | peptidase U32 Rru_A2525 2940577 - 2939573 - | peptidase U32 TERM 3205 2940187 - 2940159 - G 85 -8 -4.82901 | GCCTCGCGATAAAAA GCCACCGCTTCC GGGTT GGAGGCAGAGGC CTGGACCGACAGATG Rru_A2526 2941253 - 2940570 - | hypothetical protein TERM 3206 2940905 - 2940894 - G 84 -7.2 -4.82901 | opp_overlap 2940899, overlap 2940895 GGCGCGCGAGAAAAA GGCG CCGT CGCC ATCGGGGCCGTCCTT TERM 3207 2941069 - 2941046 - G 72 -4.5 -4.56597 | CGTCCGCCGGAAAAA GGCTGATCT CGACGC AGACCGGCC AGCCAACCGGGCGGA TERM 3208 2941202 - 2941191 - G 72 -7.2 -4.21194 | opp_overlap 2941190 CTGCACCACGGAAAA CGGC AGCG GCCG CGTTAATTGCCCAGC TERM 3209 2942138 - 2942104 - g 70 -6.2 -4.25104 | opp_overlap 2942126 2942133 CCGCGTGCACGAAAA CGCCCGGCCGCGCC CGCCCTT GCCGCTGCTAGGCG CCTGGACGGCGGTGT Rru_A2527 2941541 - 2942506 + | hypothetical protein flgL 2943448 - 2942558 - | flagellar hook-associated protein FlgL Rru_A2529 2944819 - 2943461 - | hypothetical protein TERM 3210 2943537 - 2943552 + g 80 -9 -4.17491 | opp_overlap 2943536 2943548 GTCATCTGGAACGAC TGCTGG AAAA CCAGCA TTTTCGCCGTTTCCT TERM 3211 2944454 - 2944499 + g 77 -16.1 -2.71791 | overlap 2944454 2944488 GTCACTGTCCGCCCC GGCCGTCACCGCGTTGCTGAC GGCG GTCTGCAAGGCGGTGGTGGCG CTTTCCAAGGGCGAT TERM 3212 2944454 - 2944500 + g 83 -15.9 -3.53224 | gap 1, overlap 2944454 2944488 GTCACTGTCCGCCCC G-GCCGTCACCGCGTTGCTGAC GGCG GTCTGCAAGGCGGTGGTGGCGC TTTCCAAGGGCGATC TERM 3213 2944862 - 2944897 + r 74 -12.5 -3.14344 | gap 1, overlap 2944869 CTGAAGCGTCGACGA GGCGCCGCGCGCCGGC CGGTC GCCGG-GCGTCGCGTC TTCCTCGCCAAGATC Rru_A2530 2945350 - 2944838 - | hypothetical protein TERM 3214 2944869 - 2944895 + g 76 -15 -3.13403 | overlap 2944862 GTCGACGAGGCGCCG CGCGCCGGCCGG TCG CCGGGCGTCGCG TCTTCCTCGCCAAGA TERM 3215 2944991 - 2945021 + g 100 -20.4 -3.14564 | overlap 2944993 2944997 CCGCATCACCACCTC CACCCGCAGGGCGG TGG CCGCCTTGCGGGCG TTCATCAGCCGCTGG Rru_A2531 2945634 - 2945347 - | hypothetical protein flgE 2947028 - 2945646 - | flagellar hook protein FlgE TERM 3216 2946137 - 2946163 + g 70 -10.2 -3.65812 | gap 1 TTTCGCTGATAGCCG CTCCCG-TGCC GTTGGA GGCATCGGGAG TTATCTTCAAAGCCA TERM 3217 2946541 - 2946566 + g 74 -15.5 -2.54634 | gap 1, overlap 2946540 ATCTCCGAGGTGGCC TTGGC-GGCGCC CGT GGCGCCCGCCAA ATTAATCGTCTCAAG Rru_A2533 2947769 - 2947080 - | flagellar hook capping protein Rru_A2534 2948086 - 2948982 + | flagellin-like TERM 3218 2948998 - 2949044 + F 100 -7.3 -5.71712 | gap 1 CGGTTAGCCTTAAGG GGATGAGGGGGGT-GGAG CCCACGACCAAC CACCCACCCCCCTCAGCC TTTTTTTATGTCGGG Rru_A2535 2949070 - 2950725 + | flagellar hook-associated protein 2 (FliD, filament cap protein) Rru_A2536 2950750 - 2951169 + | hypothetical protein TERM 3219 2951198 - 2951222 + F 82 -9.2 -4.34402 | opp_overlap 2951197 2951198 AGAGCGTAAAGAAAG GGGGGTGGTT CGCTT GGCCGCCCCC TTTTGATATCGAAAC Rru_A2537 2951466 - 2952047 + | RNA polymerase sigma factor TERM 3220 2952077 - 2952089 + F 76 -9.1 -4.067 | opp_overlap 2952076 2952077 ACGCATTCCGAGAAC GACCG CTC CGGTC TTCTTATTGATTTGG Rru_A2538 2952221 - 2952718 + | hypothetical protein Rru_A2539 2952817 - 2953326 + | hypothetical protein Rru_A2540 2953394 - 2954560 + | major facilitator superfamily protein MFS_1 Rru_A2541 2955148 - 2954561 - | hypothetical protein TERM 3221 2955368 - 2955358 - H 73 -4.6 -4.58663 | overlap 2955347 2955345 AGGACGTGTCAAAAA CACG TTG CGCG GTATCCGATCGCGAC TERM 3222 2955426 - 2955448 + H 75 -8.5 -4.17089 | TTGGCAGGAGGTTTT TCTTTTCGG CAATA CCGGAAAGA TTTTACCCCTTTACC TERM 3223 2955609 - 2955581 - g 72 -4.6 -4.46212 | gap 2, opp_overlap 2955587, overlap 2955584 GCTGGCATTAGAAAA TCA-CGCA-CCGGC ATT GCCGGCTTCGATGA ACTCACGCTTGGCGG TERM 3224 2955761 - 2955728 - g 76 -14.7 -3.16039 | gap 1, opp_overlap 2955722 2955723, overlap 2955754 AAGGATTTCGACGAA CCGGGCG-TCTTCG TCAGCTT CGAAGAGCGCCCGG TCGATATCATCGACA TERM 3225 2956063 - 2956042 - g 79 -8.7 -4.4078 | CTGGCTCAAGGAAAA GGGGATGAC CACC GTCATCACC GGCGAGCGCGGCGAA TERM 3226 2956792 - 2956829 + G 70 -6.3 -4.2828 | gap 1, opp_overlap 2956793 2956795, overlap 2956793 CAACCTTATAAAAAC CGATGCCGGGCTTTCATC GTT GATGGACGCCTGG-ATCC TTTTGCTGAATCGGG Rru_A2542 2955554 - 2957236 + | circadian clock protein KaiC Rru_A2543 2957312 - 2957602 + | KaiB Rru_A2544 2957617 - 2959086 + | Signal transduction histidine kinase TERM 3227 2959099 - 2959129 + F 78 -14 -3.14132 | overlap 2959089 TGACAGGTCACCGTT TCCGCGGTAAAGGG GGG CCCTTTAACGCGGC TTGATCCAGGCCCCG TERM 3228 2959606 - 2959616 + G 76 -8.2 -4.29227 | overlap 2959584 TCGGCCATCGTCGCC CGGG GCG CCCG TTTCTTCATCCTTGC Rru_A2545 2959168 - 2959755 + | hypothetical protein Rru_A2546 2961874 - 2959802 - | chemotaxis sensory transducer TERM 3229 2961477 - 2961501 + g 75 -9.1 -4.15565 | opp_overlap 2961477 2961476 GCATAGATCAGGAAC CGGCCCGTGTC ATC GCCGAGGGCCG TTTTGGCATGATCGG TERM 3230 2962152 - 2962130 - H 77 -8.4 -4.33739 | GAAAAAAGGGGAAAA GCGCCTGC GCGGAAG GCAAGCGC AAGTCAAATCCCGGG TERM 3231 2962227 - 2962198 - H 95 -20.9 -2.90813 | opp_overlap 2962203, overlap 2962203 CAGCCCCGGAAATGA CGAAACCCCAAGG TTTC CCTTGGGGTTTCG ATGGTGGGCGGTACT TERM 3232 2962203 - 2962222 + H 88 -13.6 -3.68351 | opp_overlap 2962198 2962203 CCGGAAATGACGAAA CCCCAAGG TTTC CCTTGGGG TTTCGATGGTGGGCG TERM 3233 2962222 - 2962203 - H 91 -13.6 -3.8901 | opp_overlap 2962203, overlap 2962198 CCGGAAATGACGAAA CCCCAAGG TTTC CCTTGGGG TTTCGATGGTGGGCG TERM 3234 2962343 - 2962377 + H 88 -2.6 -5.52384 | overlap 2962352 GGAGGAGCTTTTAGC CTCGCTGCGGGGGCAT TGC AAGCCCCTTTTTCGAG TTTTTTTCATGAAAC TERM 3235 2962352 - 2962368 + H 91 -7.9 -4.77925 | overlap 2962343 TTTAGCCTCGCTGCG GGGGCAT TGC AAGCCCC TTTTTCGAGTTTTTT Rru_A2547 2962427 - 2963359 + | N-formylglutamate amidohydrolase TERM 3236 2963413 - 2963389 - f 100 -12.8 -4.96848 | opp_overlap 2963388 2963387, overlap 2963390 2963405 CGGCGGACAGAAAAA GGGGCCGTGG AAAAA CCACGGCCCG AGTTTAGGGAGGAAA TERM 3237 2963412 - 2963390 - f 93 -16.3 -3.57627 | opp_overlap 2963388 2963387, overlap 2963389 2963405 GGCGGACAGAAAAAG GGGCCGTGG AAAAA CCACGGCCC GAGTTTAGGGAGGAA Rru_A2548 2963848 - 2964756 + | hypothetical protein TERM 3238 2964933 - 2964920 - g 71 -3.1 -4.57569 | gap 1, overlap 2964923 CCAGGCGCCGAAAAA TCAGGC CAA GCC-GA TCGAGCAGCTTATCC TERM 3239 2965160 - 2965110 - g 70 -11.1 -3.53343 | gap 1, overlap 2965157 AAGCTGGCGGGCAAA CTGCCCGTCGCCATCGTCAGCGGC CGCG ACCGC-GCCGATGTCGAAAAGCAG GTCGGCCTGCCCGGT Rru_A2549 2964879 - 2965772 + | HAD family hydrolase Rru_A2550 2967016 - 2965790 - | L-carnitine dehydratase/bile acid-inducible protein F Rru_A2551 2967633 - 2967013 - | hypothetical protein Rru_A2552 2967727 - 2968581 + | hypothetical protein Rru_A2553 2968578 - 2969267 + | methylase involved in ubiquinone/menaquinone biosynthesis-like Rru_A2554 2971211 - 2969277 - | methyl-accepting chemotaxis sensory transducer Rru_A2555 2972344 - 2971307 - | diguanylate cyclase TERM 3240 2971370 - 2971383 + g 78 -5.9 -4.68705 | overlap 2971361 2971378 CCCCATGGTCACCAC CCGGT CGCG GCCGG TTTTCTTGGCCTTGT TERM 3241 2972262 - 2972216 - G 72 -11.5 -3.57144 | gap 2 TTCGGTATTGCGAAA GCCGCAGGCCAGACCGGCGAAGG CCG CCGTCGCCG-TC-AGCCGGAGGC CGGTCAGCACCCCCG Rru_A2556 2973624 - 2972623 - | mandelate racemase/muconate lactonizing protein TERM 3242 2972767 - 2972728 - G 84 -13.4 -3.9534 | gap 1 ATCCAGATCGACAAA GGCGGC-GCGGCCGCCCAG CAA CAGGGCGGGCGCCATCGCC AGCGAGGTGGCCAGC Rru_A2557 2974636 - 2973629 - | hypothetical protein TERM 3243 2976007 - 2976017 + G 81 -8.2 -4.51363 | GCGCCAAAGCTACGC GCCC GCC GGGC TTTTGCTGTTTGGTC TERM 3244 2976637 - 2976655 + G 70 -11.7 -3.35679 | opp_overlap 2976625, overlap 2976652 GGACTCGCGCTCGGA CGCCGTG GTGCG CACGGCG TTGTGCGTCGAGGCC TERM 3245 2976853 - 2976829 - g 73 -14.3 -3.21099 | GCTGCGCATGATCAA GATCACCCCCG ACC CCGGGGTGATC GAGGTCAATGTCCAC TERM 3246 2977144 - 2977172 + G 77 -15.9 -2.94912 | GACCAGTCAGGCGCC GCGCGTCGACGAG GGC CGCGACGACGCGC TGTATGAATTGGCGA TERM 3247 2978046 - 2978062 + G 75 -9.3 -4.05026 | opp_overlap 2978046 CCAATGAGGCGGAAA GCCGGCG CCT CGCCCGC TTCTTTCCCTTTGGC Rru_A2558 2974895 - 2978167 + | transglutaminase-like TERM 3248 2979136 - 2979122 - g 72 -11.4 -3.53343 | overlap 2979125 AATTGCGTGGCGAAA GCACCC TCG GGGTGC CGGGACTGGTGGAAG TERM 3249 2979745 - 2979717 - g 73 -13.2 -3.28712 | CTTGTTGCGCGACAA CGC-CGAGCCGCCG CGC CGG-GGCTCGCGCG ACCTGCCCTCGCGGG Rru_A2559 2978191 - 2980914 + | hypothetical protein Rru_A2560 2980911 - 2981870 + | transglutaminase-like TERM 3250 2981898 - 2981921 + G 77 -12.4 -3.64703 | overlap 2981874 GCGTAAGCCTTTTGA CCGCCACGGT TCTT ACCCTGGCGG TTTCCCTGGGGGCGC TERM 3251 2981952 - 2981975 + G 72 -8.8 -4.08706 | gap 1 CCGCGTCCCTGACCT GGGGGACGGGC CTC GCCC-TCGCCC TTTATATCCTGAGCG TERM 3252 2982489 - 2982526 + G 78 -15.5 -3.15663 | gap 1, overlap 2982491 2982519 CCTCGCTATCGTGGA GCGCGGCGGCGCCGGCCA TGC TCGCCGCCGCCGCTG-GC TTCGTCGCCATCGGT TERM 3253 2982491 - 2982522 + G 93 -19.4 -2.56715 | gap 1, overlap 2982489 2982519 TCGCTATCGTGGAGC GCGGCGGCGCCG-GC CAT GCTCGCCGCCGCCGC TGGCTTCGTCGCCAT TERM 3254 2983168 - 2983212 + G 70 -10.6 -3.53012 | gap 2 GGCGGTGGCGCTTTC GGCGCGGGTCGCCACCGCGCCG GGC CGGC-CGGTGGGGGCG-GCGGC TTTCGGGGCGCGCGA Rru_A2561 2981867 - 2983303 + | hypothetical protein Rru_A2562 2983435 - 2983938 + | CheW protein TERM 3255 2984053 - 2984067 + T 71 -6.4 -4.26076 | opp_overlap 2984046 GGAAGGGACGAGCCA TTCGCA CGC TGCGGA TTTTGGTCGGACTAG Rru_A2566 2986620 - 2986366 - | hypothetical protein TERM 3256 2986586 - 2986606 + g 75 -3.3 -4.72272 | GGGGGCTTCAATTCT CCCAAGA AAAACAC TTTTGGG TTTTTGATGGCCAAC Rru_A2567 2987817 - 2986624 - | diguanylate cyclase TERM 3257 2987898 - 2987949 + r 82 -11 -3.90464 | opp_overlap 2987888, overlap 2987892 AAAGCTCTCGCCGCA GCCGCAGCG-CGCCTTCTCGTTGG GATTGG CAAACGAGAAGGTGGCGCT-CAGC TTGTCTTGTTTAAAG Rru_A2568 2988215 - 2987874 - | HesB/YadR/YfhF Rru_A2569 2988643 - 2988245 - | hypothetical protein Rru_A2570 2989965 - 2988697 - | cysteine desulfurase Rru_A2571 2991319 - 2989976 - | FeS assembly protein SufD Rru_A2572 2992191 - 2991370 - | FeS assembly ATPase SufC Rru_A2573 2993673 - 2992219 - | cysteine desulfurase activator complex subunit SufB Rru_A2574 2994188 - 2993724 - | BadM/Rrf2 family transcriptional regulator Rru_A2575 2994566 - 2994973 + | hypothetical protein Rru_A2576 2995103 - 2997325 + | glycogen branching enzyme Rru_A2577 2997333 - 2999354 + | glycogen debranching protein GlgX Rru_A2578 3000868 - 2999351 - | hypothetical protein TERM 3258 3000124 - 3000086 - G 78 -15.3 -3.14132 | CTCGCCGGCGACGAA GCCGCTGGCCGGCA-GGCG CAG CACCGTGCCGGCCTG-GGC CTTGAGCAGGCAGCC TERM 3259 3000612 - 3000567 - G 89 -3 -5.28778 | overlap 3000568 3000569 ACCACGCAGAAAAAA CTGCCCCCCATCCGCGCGAC CACATC GCCGCGCGCATAGGCCGCCC CCGTCGCCCAGGCGC TERM 3260 3000884 - 3000931 + r 72 -14 -2.66316 | overlap 3000880 CGGTGGCTCCTTGCG GTCCGGGCGAATCGCCCGAACT CGTC GGTCCGGACGGATCGCCCGAAC TCATCTGGTGAAGAC Rru_A2579 3001258 - 3000932 - | hypothetical protein TERM 3261 3001180 - 3001154 - G 81 -10.8 -4.07568 | opp_overlap 3001155, overlap 3001155 GGCGCCGGCGCAAAA GCCGCCGGCA TCGGCAT TGACGGCGGC GGTGCGTTCGGGCTC Rru_A2580 3002517 - 3001264 - | hypothetical protein TERM 3262 3001530 - 3001504 - G 76 -6.5 -4.56597 | gap 2, overlap 3001506 CGGGGCGGCGAAAAA GGCGGGC-G-CCG GCG CGGTCTGCGCGCC GATAACCAACACGCC Rru_A2581 3004486 - 3002510 - | hypothetical protein TERM 3263 3003256 - 3003212 - G 70 -2.1 -4.65895 | opp_overlap 3003229 3003229 CGGCGTATGGAAAAA GCTGGCATGGAGCGG-ATC-GCC GAT GGCCGTTTCCGCCCC--GCCCGC CGACAAGCCGGTCGG TERM 3264 3003341 - 3003366 + g 70 -11.1 -3.53091 | gap 1 CGCGCAATCGCAAGG CGCGGG-GTCGG CGG CCGGCACCTGCG TTTCGGCGCCGACAT TERM 3265 3003425 - 3003395 - G 70 -11.1 -3.60098 | gap 1 ATCGCGCAGGCCAAA GCTCAGGCGCTCGC CCTC GCCAGCGCCCG-GC CAGTCAACCGCCAGA TERM 3266 3004527 - 3004510 - R 74 -12.7 -3.13403 | overlap 3004508 CCTCCTCGAGCAACA GGCGCCA GGGG TGGCGCC CCTCCCATTCCAGCA Rru_A2582 3005017 - 3004490 - | hypothetical protein TERM 3267 3004817 - 3004846 + g 70 -8.6 -3.90112 | gap 1, overlap 3004819 GAAGGCGGGCGGGCG AACGTCGCTTGCC GAAAG GGCAAGCG-CGTA TTTCGTTCCGGGCAG TERM 3268 3004819 - 3004844 + g 70 -11.2 -3.54146 | gap 1, overlap 3004817 AGGCGGGCGGGCGAA CGTCGCTTGCC GAAAG GGCAAGCG-CG TATTTCGTTCCGGGC TERM 3269 3005188 - 3005166 - R 72 -11.2 -3.31461 | CAGTCATTTGGACAA GCGCGCCGAC CGG ATCGGCGCTC GACTCATCATCGGCG Rru_A2583 3005594 - 3005211 - | hypothetical protein TERM 3270 3005307 - 3005262 - G 75 -9.7 -4.09685 | overlap 3005297 3005298 GCTCACCGTCCAAAA GGCG-CCCGCGCCCTGGCCGC CGCCGC GCAGC-AGAACGCCGGTCGCC ACCACGGCGGTAGCG Rru_A2584 3005986 - 3005591 - | hypothetical protein Rru_A2585 3006510 - 3005983 - | hypothetical protein Rru_A2586 3006983 - 3006507 - | hypothetical protein Rru_A2587 3008003 - 3006990 - | hypothetical protein TERM 3271 3007760 - 3007780 + g 70 -11.1 -3.58343 | CGCGCCCGGCGATCA GCTTGGCCG GGG CGGCGAAGC TTTCGGGATCGTCCG Rru_A2588 3008549 - 3008046 - | hypothetical protein TERM 3272 3008082 - 3008106 + g 76 -15 -3.09327 | GCGGGCGGCCAGGTC GGGCTGGCTG CGCAA CAGCCGGCCC TGTTCGGTCAGATCC TERM 3273 3008473 - 3008503 + g 77 -12.4 -3.72576 | GCCACCTCGGCCTCG CGCTCGGCCAGGGC GGC GCGCAGGTCGGGCG TTTCATCGGGCGGCG Rru_A2589 3009942 - 3008584 - | hypothetical protein Rru_A2590 3011465 - 3009948 - | hypothetical protein TERM 3274 3010221 - 3010184 - G 100 -19.7 -3.48924 | CCATCCCGGAGAGAA GGCCGGCGGCTGACCCG GAAG CGGGACCGCCGCCGGGC CCGGCGAAGACCGGG TERM 3275 3011162 - 3011133 - G 77 -12.1 -3.64487 | gap 1, opp_overlap 3011153 CGACACCGCGAACAA GGCCT-CCAGCCGC AGG GCCGCCGGCAGGCC GGTGCCTTGCGCCCG Rru_A2591 3012225 - 3011509 - | hypothetical protein TERM 3276 3012959 - 3012971 + G 71 -9.1 -3.85698 | CGAGGTCGGCCAACC GGCGA TCC TCGCC TTTCTGGAACAGAAC Rru_A2592 3012477 - 3013172 + | hypothetical protein Rru_A2593 3014857 - 3013148 - | diguanylate cyclase TERM 3277 3013816 - 3013800 - G 74 -5.1 -4.4648 | overlap 3013786 3013784 3013801 3013814 ACGCCGACGACAAAA CCGTCGA CGA TCAACGA CTGAACCCCGATCAG TERM 3278 3014102 - 3014084 - G 83 -3.9 -5.24003 | gap 1 AATAAAAACCAAAAA TCC-CTTC ATAA GAAGCGGA TGAGGCTTATAGGGT TERM 3279 3014649 - 3014622 - G 79 -8.5 -4.38154 | gap 1, overlap 3014639 3014641 3014642 ACATCGTTGAGAAAA CTCGGACTGATC AGCAA GACC-GTCCGAG CGCCCGCTTCAGGCG Rru_A2594 3016865 - 3015117 - | diguanylate cyclase TERM 3280 3015542 - 3015530 - G 75 -6.9 -4.3129 | opp_overlap 3015539, overlap 3015539 TATCGATCATCAAAA CAGCC AAA GGCCG CCCAAAGCGGATTGA TERM 3281 3016531 - 3016509 - G 75 -9 -4.08945 | ATCACGCTCGGAAAA GGGATAGCGG TTT CCGCTCACCC GCGTCGCCCATCCAT Rru_A2595 3017606 - 3017142 - | hypothetical protein TERM 3282 3017553 - 3017540 - G 73 -3.7 -4.70169 | overlap 3017541 3017548 3017549 GGATATTGAACAAAA CGCCG AAAC CGGCC GCCGCCAACCCGCCG Rru_A2596 3018448 - 3017603 - | hypothetical protein TERM 3283 3018474 - 3018458 - H 100 -3.5 -5.86061 | overlap 3018459 TGCCATCAAAAAAAA GGGGGGG GAA CCCGGCC CGCGGGTCGCGGCCA TERM 3284 3018626 - 3018637 + H 74 -3.6 -4.83722 | AATCCGGGGACCCGT GGTG CTGG CGCC TTTTCTTATCATGTT Rru_A2597 3018627 - 3019499 + | Iron permease FTR1 Rru_A2598 3019502 - 3020689 + | hypothetical protein TERM 3285 3022010 - 3022026 + G 70 -10.8 -3.57144 | CGGCAGCACGCTTGT CGCCGC CGCGC GCGGCG TTTCGCCGTAAAGAG Rru_A2599 3020694 - 3022037 + | Tat-translocated enzyme TERM 3286 3022146 - 3022097 - f 100 -25.2 -4.34402 | gap 1 TCTTCGATATCAAAA GCTTGAGAGCGGCGCGCTGGAAG CAGAT CTCCC-GCACGCCGCCCTCAAGC CTTCCCCGACAAGGA TERM 3287 3022490 - 3022480 - g 75 -6.8 -4.32034 | CGATGATTACGAAAA TGGC GAG GCCA ATCCCGATTTCCCGG Rru_A2600 3022172 - 3022990 + | hypothetical protein Rru_A2601 3024088 - 3023081 - | hypothetical protein TERM 3288 3023980 - 3023951 - G 71 -14.3 -2.94144 | gap 1, overlap 3023948 TCCCGATGGAAAGGA GTCGTCGTCCCGAC CAG GACGGG-CGACGAC CAACACCCGGGGATC TERM 3289 3024555 - 3024530 - g 70 -2.4 -4.59853 | overlap 3024531 GGAAGGGGCGAAAAA CGCCCAGAGC CATTTC GCCCTGGTCC TCACCCCCAAGGGGC TERM 3290 3024904 - 3024962 + G 76 -14.5 -3.14132 | gap 1, opp_overlap 3024896 CGGAAAACGTGCGGC GGCTGCTGGC-CGCCGATGGCCCCGATC TGGA GATCGACGGCATCGGCGAGCCAACGTCC TTGGTCACCGCCGGC TERM 3291 3026330 - 3026349 + G 70 -11.4 -3.43492 | gap 1, opp_overlap 3026294 CTGGCCCGACGGGCT GGCCG-GCC TTG GGCTCGGCC TTGTCATCGATGTCG Rru_A2602 3024243 - 3026708 + | periplasmic sensor diguanylate cyclase/phosphodiesterase Rru_A2603 3026976 - 3027656 + | two component LuxR family transcriptional regulator Rru_A2604 3029714 - 3027678 - | diguanylate cyclase/phosphodiesterase TERM 3292 3029318 - 3029286 - G 74 -12.7 -3.50335 | overlap 3029282 3029280 3029287 GGTGATAAAGACGAA GCCGACGACCATCCC CTG GTAATGGTCGTCGGT CGGGCTCGAAAAGCG TERM 3293 3029317 - 3029287 - G 77 -16.2 -2.69719 | overlap 3029286 3029282 3029280 GTGATAAAGACGAAG CCGACGACCATCCC CTG GTAATGGTCGTCGG TCGGGCTCGAAAAGC TERM 3294 3029599 - 3029626 + g 70 -9.9 -3.64703 | gap 2 AAGATCAGATAATCG CGGTC-GGC-GGC GCTG GCCAGCCAGACCG TTTGCATGCCCAGAA Rru_A2605 3030449 - 3029883 - | phosphoheptose isomerase Rru_A2606 3032540 - 3030546 - | periplasmic sensor Signal transduction histidine kinase TERM 3295 3030942 - 3030905 - G 81 -7.5 -4.63932 | GATGGGTGAACAAAA GCCGCAATTGGCCGCGG TCGG CCGAGACCACCGGCAGC ACCTCCACCCGCACA TERM 3296 3032470 - 3032456 - G 95 -4.2 -5.55664 | GCATGAGCAAAAAAA TCAGCG AGG CGCCAA CGGTGGTCAGGCTGA TERM 3297 3032655 - 3032675 + H 79 -12.5 -3.55444 | opp_overlap 3032649 TGTCGGAAATTCGCC CGCCCCCTG ACT CAAGGGGCG TTTGAAAAATCGACC Rru_A2607 3032781 - 3033320 + | hypothetical protein Rru_A2608 3033329 - 3033616 + | hypothetical protein TERM 3298 3033728 - 3033678 - f 100 -21.8 -5.86061 | opp_overlap 3033679, overlap 3033679 CGCCACCAAAAAAAA TCGGGGCTCCCGCAGACTCCGCCC ATC AGGCCGAGCCCGCGGAAACCCCGT TTCTTGGACGTTTCC TERM 3299 3033679 - 3033727 + F 100 -15.8 -4.19371 | opp_overlap 3033679 3033678 GCCACCAAAAAAAAT CGGGGCTCCCGCAGACTCCGCC CATCA GGCCGAGCCCGCGGAAACCCCG TTTCTTGGACGTTTC TERM 3300 3033727 - 3033679 - f 100 -25.3 -4.10552 | opp_overlap 3033679, overlap 3033678 GCCACCAAAAAAAAT CGGGGCTCCCGCAGACTCCGCCC ATC AGGCCGAGCCCGCGGAAACCCCG TTTCTTGGACGTTTC TERM 3301 3033902 - 3033935 + F 90 -14.6 -3.55548 | TCCCGCCGCGTTCGA GCGGTGAGCGGGAA ATCCGC TCCCCGTTCACCGC TTTAACAGGCTGTTA TERM 3302 3034314 - 3034262 - g 74 -12.1 -3.57039 | gap 3, overlap 3034256 CATGGAGAACCACAA CG-GCTTGGTGGT--CGGCGCCCTGG TCAC CCAGGCCACCGGCACCGCCAAGCGCG AAGCGGCCCTGGTCG TERM 3303 3034511 - 3034556 + G 77 -12.5 -3.6682 | overlap 3034514 CACCCCCCGCCATCC CGGCTACGCCATCCGCTTGCG CATC CGCAAGCGGATCGAGGAGGTG TTTGGCTGGATCAAG TERM 3304 3034514 - 3034553 + G 71 -15 -2.6462 | overlap 3034511 CCCCCGCCATCCCGG CTACGCCATCCGCTTGCG CATC CGCAAGCGGATCGAGGAG GTGTTTGGCTGGATC Rru_A2609 3034017 - 3034637 + | hypothetical protein Rru_A2610 3034864 - 3038805 + | hypothetical protein TERM 3305 3039188 - 3039136 - g 74 -12.1 -3.57039 | gap 3, overlap 3039130 CATGGAGAACCACAA CG-GCTTGGTGGT--CGGCGCCCTGG TCAC CCAGGCCACCGGCACCGCCAAGCGCG AAGCGGCCCTGGTCG Rru_A2611 3038891 - 3039337 + | hypothetical protein TERM 3306 3039398 - 3039381 - T 79 -8.3 -4.57569 | overlap 3039382 GGATTCCGGCAAAAA CGGCCGC AAAC GCGGCCC GTAACCCCACGCCAG TERM 3307 3039397 - 3039382 - T 72 -11.8 -3.3422 | overlap 3039381 GATTCCGGCAAAAAC GGCCGC AAAC GCGGCC CGTAACCCCACGCCA Rru_A2612 3040352 - 3039477 - | hypothetical protein Rru_A2613 3041973 - 3040435 - | hypothetical protein TERM 3308 3042792 - 3042771 - R 78 -2.9 -5.15969 | overlap 3042772 CCGCAATCGAAAAAA CCAATGGCG CAGC CGCAATCGA AAGAACCAATGGCGC TERM 3309 3042881 - 3042864 - R 74 -3.4 -4.74103 | overlap 3042865 TGCGCAACCGAAAAA CTGCGT ATGCGG ACGCAA GCCAGCCTTTTCAGG Rru_A2614 3043665 - 3042919 - | transcriptional regulator Rru_A2615 3044363 - 3044004 - | ArsR family transcriptional regulator Rru_A2616 3044654 - 3045583 + | histone deacetylase superfamily protein TERM 3310 3045630 - 3045665 + F 85 -16.9 -2.91274 | gap 2, overlap 3045638 3045638 AACGCGGTTTCGGTG GGCGGTGTGCGCGGGGC GGTT GCTCCGCGC-C-CCGCC TGTCGTTACAATCCC Rru_A2617 3045636 - 3046004 + | exodeoxyribonuclease VII small subunit Rru_A2618 3046037 - 3046954 + | farnesyl-diphosphate synthase TERM 3311 3046977 - 3046990 + F 75 -8.1 -4.25104 | CGGGGGTGTTTCCCC CCGTC AAGG GACGG TTTTCATACGAGGAG TERM 3312 3047897 - 3047875 - g 72 -6.8 -4.18018 | overlap 3047876 CGTGGTGACGCAAAA GGGCAAGGGC TAT GCCCCGGCCG AGAACGCGCCCGACA Rru_A2619 3047015 - 3048952 + | 1-deoxy-D-xylulose-5-phosphate synthase Rru_A2620 3048958 - 3049752 + | hemolysin A TERM 3313 3049792 - 3049758 - T 76 -9.9 -3.72576 | gap 1, opp_overlap 3049757 3049781 CGGGGTGTGAGCAAA CCGGCCG-CCCTTCGG CATG CCAACGGCCCGGCCGG GATTGTCCCGCCGGG TERM 3314 3049781 - 3049810 + T 100 -21.5 -4.35483 | gap 1, opp_overlap 3049758, overlap 3049757 CCTTCGGCATGCCAA CGGCCCGGCCGGGA TTG TCCCG-CCGGGCCG TTTCTTATGATCAGC Rru_A2621 3051602 - 3049821 - | peptidase S49 TERM 3315 3051696 - 3051660 - H 74 -11.6 -3.48924 | gap 1, opp_overlap 3051686, overlap 3051661 CCACCCCCGAGACAA GCCGGCCGCGCCG GGATCGGCCTAT CGGCGCGGCCG-C GTCCCCGGACGCCCC Rru_A2622 3051894 - 3052136 + | hypothetical protein Rru_A2623 3053261 - 3052161 - | chorismate synthase Rru_A2624 3054107 - 3053268 - | enoyl-[acyl-carrier-protein] reductase [NADH] TERM 3316 3054158 - 3054139 - H 76 -12.1 -3.39784 | opp_overlap 3054155, overlap 3054137 GTATTGGTAATAAGA CCGGCCC GTCTGA GGGCCGG TGAAAATCGGTTGAA TERM 3317 3054281 - 3054254 - g 72 -5.4 -4.30576 | opp_overlap 3054254, overlap 3054255 GGTGGACGACGAAAA CCGGCGGCGC GGGCTTTT GGGCCGCCGT TCGCACGCCCGCTCA TERM 3318 3054902 - 3054915 + G 73 -3.7 -4.57569 | overlap 3054903 TATGCTGGTGCCCAA CCGGC CGGT GCCGC TTTTTCACGCCCTGG TERM 3319 3055167 - 3055126 - g 74 -8 -4.19238 | gap 3, overlap 3055127 3055161 TCCCCAATTGGAAAA TGGCCCG-TC-GCCTGACCCG GGC CGGG-CAGGATGAACGGGCCG CCCGTCTGCGCATCG Rru_A2625 3054237 - 3055559 + | tRNA-processing RNAse BN Rru_A2626 3056552 - 3055572 - | chaperone DnaJ TERM 3320 3056236 - 3056215 - G 72 -8.7 -4.07568 | opp_overlap 3056233, overlap 3056228 3056232 TCGTCCTCGCCAAAA GTCGATTCG AAAT CGAATCGGC CGAAACCGCCGCTGC TERM 3321 3056649 - 3056680 + H 72 -12.2 -2.98545 | gap 1, overlap 3056647 3056649 CCGCTTGCCGACCCG CCGGGGCCGGAAGCG GAT CG-TACCTGCCCCGG TCCTTGTTATCCAGC TERM 3322 3056754 - 3056724 - H 72 -13.3 -2.52464 | gap 2, opp_overlap 3056713 3056712 TGCTGGCTGAATTGA CGA-GCCG-CGGCGG ACC CCGCCGGCGGCGCCG TCGACAAGGCCCTTT TERM 3323 3056968 - 3056987 + G 79 -7.8 -4.53705 | overlap 3056958 CGTGATCGCCCAGGC TGACGCCG AGGG CGGCTTCA TTTTCTATACCAATT Rru_A2627 3056801 - 3057406 + | pyridoxamine 5'-phosphate oxidase TERM 3324 3057724 - 3057760 + G 72 -5.7 -4.32034 | gap 1, overlap 3057720 3057725 3057727 GCCGAACCCTTGGCC GGCCTCGGGCAGGCGG CCTTCA TCGCCGGCTCG-GGCA TTTTCCTGGTGATCG Rru_A2628 3057457 - 3058434 + | cation efflux protein Rru_A2629 3059474 - 3058446 - | Beta-lactamase-like TERM 3325 3059088 - 3059076 - G 72 -5.5 -4.36914 | opp_overlap 3059082 GGCCCGGTGATAAAA GGCCT TCG AGACC GCCCCCACCGTTTCG Rru_A2630 3059652 - 3060584 + | N-acetylglucosamine kinase Rru_A2631 3060577 - 3061185 + | hypothetical protein Rru_A2632 3061553 - 3061203 - | peptidoglycan binding domain-containing protein TERM 3326 3061287 - 3061322 + g 78 -15.4 -3.14848 | gap 1, overlap 3061287 CTTGGCGGCGAGCGC GGCGGTGGCCTCGCCGG TCA CCGGC-AGGCCGGCGTC CTTTTGATAGCCGCG TERM 3327 3061287 - 3061323 + g 91 -13 -4.25104 | overlap 3061287 CTTGGCGGCGAGCGC GG-CGGTGGCCTCGCCGG TCA CCGGC-AGGCCGGCGTCC TTTTGATAGCCGCGG TERM 3328 3061623 - 3061639 + r 71 -7.9 -4.07885 | opp_overlap 3061591 3061588 3061587 CGTTCCCCTGCCGCT CGCCGCT CCA AGCGCCG TTTTAACCGAGGCTG Rru_A2633 3062298 - 3061642 - | ABC transporter component Rru_A2634 3063238 - 3062291 - | cobalt transport protein TERM 3329 3062826 - 3062863 + g 70 -11.3 -3.57144 | overlap 3062827 AAGGGGATCAGCACC AGCATGGCGACGATGAA GCCG TCCATCATCGCCATGCG TTTCAGGGTGCGCCC TERM 3330 3062827 - 3062862 + g 72 -14.8 -2.74144 | overlap 3062826 AGGGGATCAGCACCA GCATGGCGACGATGAA GCCG TCCATCATCGCCATGC GTTTCAGGGTGCGCC TERM 3331 3063159 - 3063117 - G 79 -6.8 -4.70772 | gap 1, overlap 3063118 ACAGATGGAACAAAA GGGGCGACAGCGGG-GACG GCCGAT CGCCGCCCGCCGACGACGC ACGATAGCCCAAGCC Rru_A2635 3063366 - 3064124 + | Crp/FNR family transcriptional regulator Rru_A2636 3064121 - 3064825 + | Crp/FNR family transcriptional regulator TERM 3332 3065083 - 3065096 + G 77 -3.1 -4.89009 | gap 1, opp_overlap 3065071, overlap 3065083 3065084 ACATGTCCCGGATCC G-GACG ACT CGTCGC TTTTTCCTTCGATGT TERM 3333 3065627 - 3065610 - g 73 -4.1 -4.62069 | gap 1, overlap 3065613 TCGCTATTTGAAAAA GCAGGGCT GGA AGCCC-AC AACCGTTGCCCATAT TERM 3334 3065855 - 3065875 + G 70 -10.4 -3.68351 | TGATCCCCCATCCCT CGCCCATG GCCCG CGTGGGCG TTTCGGTGCTCGGAC TERM 3335 3066132 - 3066144 + G 78 -6.2 -4.59853 | overlap 3066116 CCTGGTTGACGAGGC GGCG ATCAG CGCC TTTTTGAAGCATTCC Rru_A2637 3065038 - 3067479 + | hypothetical protein TERM 3336 3068270 - 3068284 + G 77 -3.5 -4.8048 | overlap 3068271 TGAACTTTGTCGACA TGGCA CTTTA TGCCG TTTTTGGTCTCGACC TERM 3337 3068388 - 3068404 + G 72 -8.7 -4.11216 | overlap 3068389 TTACTTCATGCCGAA TGAACCC GAA GGGTTCG TTTTGCCCATGAACC Rru_A2638 3067639 - 3068487 + | hypothetical protein Rru_A2639 3069602 - 3068646 - | hypothetical protein TERM 3338 3068799 - 3068822 + g 83 -8.2 -4.69664 | gap 1, opp_overlap 3068798 ACGGATCGCACTAAT CTTGCGTCGAC AGA GTCGA-GCGAG TTTTTCCGTCATCTC Rru_A2640 3070711 - 3069599 - | hypothetical protein TERM 3339 3070153 - 3070180 + g 80 -9 -4.19735 | CCGGACGCAACGGCT GCCGCAGGGGTG GCTC CATCCAGGCGGC TTTGCTTTTGAGCAA Rru_A2641 3071400 - 3070831 - | hypothetical protein Rru_A2642 3072645 - 3071728 - | Alpha/beta hydrolase fold TERM 3340 3072142 - 3072124 - G 91 -11.6 -4.16921 | TAACAAGTCGCAAAA GGCCGCCC GAT GGGCGGTC AGCCCGGCTTGGCCG TERM 3341 3073369 - 3073343 - g 70 -6.4 -4.27316 | overlap 3073358 TGGCCGAATTCAAAA CGCTGTCGGGCA AGA TGGACGCCAGCG ATCCGACGGCGACCA Rru_A2643 3072850 - 3074097 + | glycerophosphoryl diester phosphodiesterase TERM 3342 3074190 - 3074158 - f 85 -15.6 -3.14132 | opp_overlap 3074158, overlap 3074123 CCCCGCCCGGACCAA GGTCGCCCTCACAG CCATT CCCTGAGGGCGACC TTTTGATGGACGACG TERM 3343 3074158 - 3074190 + F 100 -13.4 -4.25104 | opp_overlap 3074123 3074158 CCCCGCCCGGACCAA GGTCGCCCTCACAG CCATT CCCTGAGGGCGACC TTTTGATGGACGACG TERM 3344 3074353 - 3074409 + G 70 -3.5 -4.56597 | overlap 3074363 3074374 TTGAAGAACTCGAAC GCCGGGGCTGGGACGCCGAT-GTGCTG TCGGT CGGCCTTGATGGCG-CCCGGCTGCGGC TTTTTCCCGCGCGCA Rru_A2644 3074196 - 3074432 + | hypothetical protein TERM 3345 3075112 - 3075163 + G 81 -8.4 -4.52589 | gap 1, overlap 3075096 3075118 CGCCGCCACCCGCCC GGCCCTGCTGCTCGGCGCCCTGGCG GTG CTTCTGGCCGCCG-GCGGCTTGGTC TTTTCTGTGCCCGCC TERM 3346 3075319 - 3075356 + G 71 -13.9 -2.91144 | overlap 3075334 3075341 TTGGGGGCTGCTGCC CGCCGCCCTGGTCGCCG GAGC CGGCGCCCTGGCCGGCA TCGTTTCCCCGCTGG Rru_A2645 3074429 - 3075733 + | hypothetical protein Rru_A2646 3075739 - 3076245 + | hemerythrin HHE cation binding region TERM 3347 3076228 - 3076267 + T 95 -17.9 -3.32844 | gap 1, overlap 3076211 CTGGCCGCCCTTCGC GGCGCGGCGCGGGGTTAG CTTCC CCAATCCCG-GCCGCGCC TTCTGCCCTAACCCC Rru_A2647 3077426 - 3076296 - | hypothetical protein TERM 3348 3076417 - 3076435 + g 82 -11.6 -4.11216 | opp_overlap 3076415, overlap 3076397 CGGCGCGAGACGATG GCCCCGCC CAC GGCGTGGC TTTTGGCGATCAGCG TERM 3349 3077233 - 3077253 + g 73 -14.7 -2.84098 | overlap 3077231 TAGGGGACCTTGGTA CTCGACGCG TCC CGCGTCGGG TCATTCATTGACGCG Rru_A2648 3077550 - 3078680 + | FAD dependent oxidoreductase TERM 3350 3079154 - 3079174 + G 72 -4.7 -4.50988 | gap 1, opp_overlap 3079152 ACCACCGACGAGATC GCCCT-GC TCAAGC GCGAGGGC TTCTTTTTCATATCC Rru_A2649 3078671 - 3079795 + | extracellular endo alpha-1 4 polygalactosaminidase or related polysaccharide hydrolase-like TERM 3351 3079834 - 3079801 - T 100 -13.2 -5.00616 | gap 2, overlap 3079802 3079804 GCCCTTGTGAAAAAA CTACTCCCGGGGGACG GATC CGCCCCCCGGGAG--G TCAAGAAAGACGATG TERM 3352 3079835 - 3079802 - T 93 -15.9 -3.60048 | overlap 3079801 3079804 CCCTTGTGAAAAAAC TACTCCCGGGGGACG GATC CGCCCCCCGGGAGGT CAAGAAAGACGATGT TERM 3353 3079833 - 3079804 - T 100 -22.9 -3.37655 | overlap 3079801 3079802 CTTGTGAAAAAACTA CTCCCGGGGGACG GATC CGCCCCCCGGGAG GTCAAGAAAGACGAT Rru_A2650 3080170 - 3079907 - | hypothetical protein TERM 3354 3080129 - 3080151 + g 70 -10.4 -3.73783 | GAAACGCGTTCCCTG CGGCCGGGTC AAA GCCCCGCCCG TTGTTCCGTTGCCTG Rru_A2651 3081643 - 3080618 - | aminotransferase TERM 3355 3080998 - 3080950 - G 74 -12.4 -3.53012 | gap 2, overlap 3080903 3080902 GCGCCGGGCCGGAAA CCGCCC-AGG-GGCCGAGACGCCG GGC CAAGGGCTCGACCACCTCGGGCGG CCCGGCCAGCCATCC TERM 3356 3081182 - 3081136 - G 75 -15.7 -2.71011 | gap 1 ACGCCTCGTCAACGA TCAGCCAGCCGCCCGCCGCCGC CTGG GCCGCGGCGG-CGGCCAGCAGC GACTCCGCCGACCAG Rru_A2652 3082073 - 3081648 - | hypothetical protein TERM 3357 3082036 - 3082054 + g 88 -10.2 -4.30719 | overlap 3082038 ACGGCCTCGATCACC CCGTCGCC GTC GGCGACCG TTTCTTGTCGCGACC Rru_A2653 3082986 - 3082336 - | hypothetical protein Rru_A2654 3083458 - 3083183 - | acylphosphatase Rru_A2655 3083510 - 3084082 + | intracellular septation protein A Rru_A2656 3084880 - 3084107 - | ATP12 ATPase TERM 3358 3084956 - 3084917 - R 100 -7.7 -5.31275 | overlap 3084918 3084919 GGTCAGGATAAAAAA GGGCCGGCATCCGTGGC GCGGCG GCGACGGATGCCGGGTA TAAGGTCTTGCCCGC TERM 3359 3084955 - 3084918 - R 80 -11.2 -3.78042 | overlap 3084917 3084919 GTCAGGATAAAAAAG GGCCGGCATCCGTGGC GCGGCG GCGACGGATGCCGGGT ATAAGGTCTTGCCCG TERM 3360 3084954 - 3084919 - R 79 -14.7 -2.86102 | overlap 3084918 3084917 TCAGGATAAAAAAGG GCCGGCATCCGTGGC GCGGCG GCGACGGATGCCGGG TATAAGGTCTTGCCC Rru_A2657 3087191 - 3084978 - | AsmA TERM 3361 3085400 - 3085382 - G 78 -16 -3.17075 | opp_overlap 3085388 3085388 CGGTTTCCAAGCCAA CCCCGTCC CGG GGACGGGG ACGCACCCCGACATC Rru_A2658 3087915 - 3087205 - | haloacid dehalogenase-like hydrolase TERM 3362 3087897 - 3087876 - G 74 -7.9 -4.2349 | gap 1, overlap 3087877 CGTCGACATCGAAAA TCGCCAGCCG CAG CGGC-GGCGC GGAAAGAATCGCGGT Rru_A2659 3088911 - 3087919 - | ribosomal large subunit pseudouridine synthase C TERM 3363 3088957 - 3088973 + r 76 -12.3 -3.31415 | overlap 3088953 GGATTAGCTTTGCTC TTCCGCC ACA GGCGGAA TTAGCTTTGATCGTC Rru_A2660 3090293 - 3088974 - | recombination factor protein RarA TERM 3364 3089493 - 3089465 - G 70 -13.1 -3.02471 | GGCGCAGCAGATACA GCGGATCCTCGCC GCC GGCCAGCATCCGC CCCATCCAATAGAGC Rru_A2661 3092290 - 3090356 - | diguanylate cyclase TERM 3365 3091502 - 3091466 - G 100 -11.4 -4.72272 | overlap 3091467 GGCGCCCAGCAAAAA GCTGCTGGCCCCCGGC GGATG GTCGGAGGCCAGCCGG TTGAGCATGGCGTTG TERM 3366 3091501 - 3091467 - G 80 -14.9 -3.43042 | overlap 3091466 GCGCCCAGCAAAAAG CTGCTGGCCCCCGGC GGATG GTCGGAGGCCAGCCG GTTGAGCATGGCGTT Rru_A2662 3093864 - 3092389 - | peptidase S1C, Do TERM 3367 3093975 - 3093946 - R 100 -17.1 -4.05788 | opp_overlap 3093943 3093946, overlap 3093930 3093941 3093928 CTCGCCCAAAGGAAA GGGGCGCCTCTCC TCGC GGAAGGGCGCCCC TCGTGTCGTTGGCGA TERM 3368 3093946 - 3093975 + r 84 -17.1 -2.69964 | opp_overlap 3093930 3093941 3093928 3093946, overlap 3093943 CTCGCCCAAAGGAAA GGGGCGCCTCTCC TCGC GGAAGGGCGCCCC TCGTGTCGTTGGCGA Rru_A2663 3094429 - 3094007 - | 50S ribosomal protein L17P Rru_A2664 3095619 - 3094597 - | DNA-directed RNA polymerase subunit alpha TERM 3369 3095720 - 3095682 - R 83 -16.8 -2.53876 | gap 1, overlap 3095660 3095686 CCTGATCTCAAGGGA CGAACCGCC-GAACCCC TTCGGT GGGGTTCCGGCGGCCCG GAAACGGGTGTGGAG TERM 3370 3095716 - 3095686 - R 82 -14.8 -3.22091 | gap 1, overlap 3095682 ATCTCAAGGGACGAA CCGCC-GAACCCC TTCGGT GGGGTTCCGGCGG CCCGGAAACGGGTGT Rru_A2665 3096165 - 3095776 - | 30S ribosomal protein S11 TERM 3371 3096237 - 3096258 + r 73 -10.1 -3.62255 | overlap 3096232 3096238 CGTCCGCGAGGTGGT CTCGACCCC GGGC GGGGTCGAC TTACTTCTTCTTGCC TERM 3372 3096238 - 3096257 + r 73 -13.6 -2.7663 | overlap 3096237 3096232 GTCCGCGAGGTGGTC TCGACCCC GGGC GGGGTCGA CTTACTTCTTCTTGC rpsM 3096627 - 3096259 - | 30S ribosomal protein S13 TERM 3373 3096697 - 3096679 - R 100 -11 -6.21477 | AACACTAAAAAAAAA CGCGAAAC GCG GTCTCGCG CAGCCTTGGCCCGTA Rru_A2667 3097362 - 3096775 - | adenylate kinase secY 3098702 - 3097359 - | preprotein translocase subunit SecY TERM 3374 3098860 - 3098806 - R 100 -22.5 -4.42238 | gap 2, overlap 3098853 TCATCCCAATGAAAA TCTGAAGCGGTTTTCAGGCAGGGTCGG CGG CCGACCCTCCCTGAAAAC-GCCTC-GA AGCGGAAGAATGGCC TERM 3375 3098865 - 3098917 + r 76 -9.5 -4.07568 | opp_overlap 3098871 3098872, overlap 3098868 AAACGCCTCGAAGCG GAAGAATGGCCCGGGGGAGACGGCG CGA CGCCCCCTCCCCCAGGCCGGAAATC TTTTAGACGGCGGCC TERM 3376 3098911 - 3098871 - R 100 -22.5 -3.68222 | opp_overlap 3098868 3098865, overlap 3098872 CTCGAAGCGGAAGAA TGGCCCGGGGGAGACGGCG CGA CGCCCCCTCCCCCAGGCCG GAAATCTTTTAGACG TERM 3377 3098910 - 3098872 - R 100 -26 -2.80612 | opp_overlap 3098868 3098865, overlap 3098871 TCGAAGCGGAAGAAT GGCCCGGGGGAGACGGCG CGA CGCCCCCTCCCCCAGGCC GGAAATCTTTTAGAC Rru_A2669 3099408 - 3098920 - | 50S ribosomal protein L15P TERM 3378 3099097 - 3099112 + g 70 -6.1 -4.21194 | opp_overlap 3099096 ACGACGGACCAAACC GGCCT CGATCA AGGCC TTTTCGGTGATCACG TERM 3379 3099127 - 3099160 + g 85 -16.1 -3.36327 | gap 1, opp_overlap 3099096 CTTTTCGGTGATCAC GGCCGTCG-CGTCAAG CTT CTTGGCGTCGATGGCC TTCTGGATACGATCC TERM 3380 3099344 - 3099364 + g 82 -6 -4.72272 | overlap 3099354 TTGCCCGACCCGATG CCGCGGCC AACGC GGATGCGG TTTTTCGTCGCACCC rpmD 3099617 - 3099426 - | 50S ribosomal protein L30 rpsE 3100228 - 3099629 - | 30S ribosomal protein S5 TERM 3381 3100176 - 3100211 + g 73 -14 -3.1355 | gap 1 CGGGGAGACCGGTTG CGCTGGTCGTCGCC-GC CGC GCTGGCGACGATCCGTG TTGGGTGTACGTGCC TERM 3382 3100264 - 3100252 - R 73 -10.5 -3.5891 | overlap 3100250 3100253 CCCTAGAACGAAAGA CCCGC CTC GCGGG CGGCATCCGCGAGAG Rru_A2672 3100601 - 3100239 - | 50S ribosomal protein L18P rplF 3101144 - 3100611 - | 50S ribosomal protein L6 rpsH 3101559 - 3101161 - | 30S ribosomal protein S8 rpsN 3101881 - 3101576 - | 30S ribosomal protein S14 rplE 3102438 - 3101899 - | 50S ribosomal protein L5 Rru_A2677 3102767 - 3102447 - | 50S ribosomal protein L24P TERM 3383 3102725 - 3102744 + g 82 -4.9 -4.87626 | overlap 3102717 TGTCCTTGCCGGCGA GGACGAC CACCTT GTCGCCC TTTTTGATCTTGGCG Rru_A2678 3103135 - 3102767 - | 50S ribosomal protein L14P Rru_A2679 3103440 - 3103201 - | SSU ribosomal protein S17P TERM 3384 3103299 - 3103339 + g 79 -4.6 -4.82901 | overlap 3103301 TCTTGAACTGGTTCA GCTCGTCATGCGCCGCAA ATTTC TTGGTGCGCTTGATGAAC TTTTTGTAGACGGCG TERM 3385 3103467 - 3103504 + r 80 -11.1 -3.72695 | overlap 3103488 CTTCCCGCGCCTTAT TTCGCCTGGGGAGCGCG GTTG CGCTCGCCCCGGACGGA TTTGATGCGGGCGAT Rru_A2680 3103669 - 3103463 - | 50S ribosomal protein L29P rplP 3104088 - 3103672 - | 50S ribosomal protein L16 rpsC 3104779 - 3104108 - | 30S ribosomal protein S3 rplV 3105159 - 3104779 - | 50S ribosomal protein L22 Rru_A2684 3105440 - 3105162 - | SSU ribosomal protein S19P rplB 3106292 - 3105453 - | 50S ribosomal protein L2 TERM 3386 3105666 - 3105681 + g 77 -6.8 -4.52781 | gap 1, overlap 3105654 CATCCAGCGCGAGCG GC-CGGC CTT GCCGAGC TTTTCGTTCTGGTTG rplW 3106610 - 3106296 - | 50S ribosomal protein L23 Rru_A2687 3107227 - 3106607 - | 50S ribosomal protein L4P TERM 3387 3106883 - 3106919 + g 70 -8.6 -3.96068 | gap 1, overlap 3106883 GCCGGCCTGGGCCTT GG-CCGACAGCGCGGTC TTCA GACCGAGCTTGCGGACC TTCTTATTCAGATCA rplC 3107941 - 3107234 - | 50S ribosomal protein L3 rpsJ 3108277 - 3107969 - | 30S ribosomal protein S10 TERM 3388 3108363 - 3108319 - R 71 -9.2 -3.75863 | gap 2, opp_overlap 3108320 3108321 3108323, overlap 3108321 3108324 AAAACGTTCATCAAA TACGATGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCG--GTA GGTTTTTTCTTACTG TERM 3389 3108320 - 3108365 + r 95 -7.3 -5.5112 | gap 1, opp_overlap 3108319 3108321 3108324, overlap 3108321 3108323 AAACGTTCATCAAAT ACGA-TGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCGGTAGG TTTTTTCTTACTGAA TERM 3390 3108364 - 3108321 - R 70 -10.8 -3.45592 | gap 1, opp_overlap 3108320 3108321 3108323, overlap 3108319 3108324 AACGTTCATCAAATA CGA-TGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCGGTAG GTTTTTTCTTACTGA TERM 3391 3108321 - 3108364 + r 78 -10.8 -3.89587 | gap 1, opp_overlap 3108319 3108321 3108324, overlap 3108320 3108323 AACGTTCATCAAATA CGA-TGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCGGTAG GTTTTTTCTTACTGA TERM 3392 3108323 - 3108361 + r 76 -13.6 -2.99438 | opp_overlap 3108319 3108321 3108324, overlap 3108321 3108320 CGTTCATCAAATACG ATGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCGG TAGGTTTTTTCTTAC TERM 3393 3108360 - 3108324 - R 85 -17.1 -2.87501 | opp_overlap 3108323 3108321 3108320, overlap 3108319 3108321 GTTCATCAAATACGA TGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCG GTAGGTTTTTTCTTA TERM 3394 3108406 - 3108381 - R 72 -12.5 -3.05384 | TTTTTTCTTACTGAA CGATGCTGGCG ACGA CGCCGGCACCG ACGGTACGGCCACCC Rru_A2690 3109563 - 3108373 - | elongation factor Tu Rru_A2691 3111672 - 3109594 - | translation elongation factor 2 (EF-2/EF-G) TERM 3395 3111418 - 3111360 - G 72 -13.1 -3.1585 | overlap 3111378 CCACCGAATCGAACA CGGCGATCGCACCATCAAGGACGCGCA AGGAG CGCTCGACCTCGATGGTGAAATCAACG TGGCCCGGGGTGTCG TERM 3396 3111680 - 3111695 + r 72 -2.5 -4.75372 | overlap 3111657 3111677 CGTTTCATGACGCTG GACTC TCTTCC GGGTC TTTTTACTGGATACT Rru_A2692 3112179 - 3111709 - | 30S ribosomal protein S7 rpsL 3112566 - 3112195 - | 30S ribosomal protein S12 TERM 3397 3112661 - 3112606 - R 93 -6.1 -5.53288 | gap 2, opp_overlap 3112610 3112611, overlap 3112607 CGGAACTCAAAAAAA TTTGCCGTCACGACGACCCGTCGGGCG CTTT CGCCCGACAGGCGACCGTT-CG-CAAC GATGCGAAGTTAAAA TERM 3398 3112660 - 3112607 - R 73 -9.6 -3.90888 | gap 2, opp_overlap 3112610 3112611, overlap 3112606 GGAACTCAAAAAAAT TTGCCGTCACGACGACCCGTCGGGCG CTTT CGCCCGACAGGCGACCGTT-CG-CAA CGATGCGAAGTTAAA TERM 3399 3112896 - 3112865 - R 88 -7.2 -4.98255 | overlap 3112867 3112890 3112892 CGTCAAGGACAAAAA GCCCCCGTTCCCCT AGGA AGCGAAACAGGGCC GACAGTCCTCGCGGA TERM 3400 3112924 - 3112890 - R 85 -12.9 -3.78329 | gap 1, overlap 3112867 3112865 3112892 CCCTAGGAAGCGAAA CAGGGCCGACAG-TCC TCGC GGATCCGTCGGCCCCA TCCTCGAATTCTCGC TERM 3401 3112922 - 3112892 - R 93 -15.5 -3.47526 | gap 1, overlap 3112867 3112865 3112890 CTAGGAAGCGAAACA GGGCCGACAG-TCC TCGC GGATCCGTCGGCCC CATCCTCGAATTCTC Rru_A2694 3117161 - 3112980 - | DNA-directed RNA polymerase TERM 3402 3113303 - 3113316 + g 73 -5.9 -4.41494 | overlap 3113304 GAACCGGGATGGAAT TGGCC GGGC GGCCG TTTTCCTTCAGGGTC TERM 3403 3116218 - 3116232 + g 71 -12.8 -3.28712 | GCCCCGGTGATCGCC CGGCCG CGA CGGCCG TTGTCGAACAAGGCG TERM 3404 3117304 - 3117256 - R 70 -10.2 -3.55444 | gap 1, opp_overlap 3117256, overlap 3117257 CCCGGACCGCCCAAA TGCCTAAGGGCCCGCGCGCCGGA GTCA TCCGGGACGCGGG-CCTGAAACG ACTATTTAGAAGCTG TERM 3405 3117303 - 3117257 - R 73 -13.7 -2.73124 | gap 1, opp_overlap 3117256, overlap 3117256 CCGGACCGCCCAAAT GCCTAAGGGCCCGCGCGCCGGA GTCA TCCGGGACGCGGG-CCTGAAAC GACTATTTAGAAGCT rpoB 3121491 - 3117310 - | DNA-directed RNA polymerase subunit beta TERM 3406 3121677 - 3121620 - R 100 -16.9 -3.58731 | gap 1, opp_overlap 3121639, overlap 3121612 3121611 3121621 AAAATACTCGGGAAA GCCCG-AAGGCCGGTCGACAGACACACC AAC GGAGTGCCTGCCTTCCGGCCCTGCGGGA CGCCTCGGAACCCCG TERM 3407 3121676 - 3121621 - R 95 -20.4 -2.74515 | gap 1, opp_overlap 3121639, overlap 3121612 3121611 3121620 AAATACTCGGGAAAG CCCG-AAGGCCGGTCGACAGACACACC AAC GGAGTGCCTGCCTTCCGGCCCTGCGGG ACGCCTCGGAACCCC rplL 3122067 - 3121696 - | 50S ribosomal protein L7/L12 Rru_A2697 3122644 - 3122126 - | 50S ribosomal protein L10P TERM 3408 3122220 - 3122164 - G 85 -13.4 -4.09243 | CATACGCGTTGAAAA CCCGGGCAAGCTGGGCCGCGGGCGCC TGGGT GACGCCAGCGATCCGGGTAGCCGGGG TGGTGATCATGCCGA TERM 3409 3122605 - 3122624 + g 79 -2.8 -5.0916 | gap 1, opp_overlap 3122608, overlap 3122606 CTCCGAACAGGGAAT TGAGCTCGG ATA CC-AGCTCC TTTTTCTCTTCCCGG TERM 3410 3122790 - 3122835 + r 71 -5.4 -4.42639 | overlap 3122792 GCCCCGGAAGTCGAA CCCTTTCTAACCGG-GACGTGC CAGG GCACGGCGCCGGA-GGAAAGTG TTTTCCTTCCCGTCT rplA 3123716 - 3123015 - | 50S ribosomal protein L1 TERM 3411 3123415 - 3123458 + g 72 -13.1 -3.16742 | gap 1, overlap 3123419 TTCTGAATGTCGGCG GCCA-GTTCGTCGGCCCCGA CCAGA TCGGCGCCGGCGGCCTTGGC TTCCTCGGCCTTGGC rplK 3124149 - 3123721 - | 50S ribosomal protein L11 nusG 3124831 - 3124301 - | transcription antitermination protein NusG secE 3125033 - 3124836 - | preprotein translocase subunit SecE TERM 3412 3124923 - 3124902 - G 82 -4.3 -4.89233 | GACCAACAGGAAAAA CACAGCCGC CAGC GAGGCCATG ATGAAAACCATGACC TERM 3413 3125058 - 3125072 + r 77 -11.4 -3.61398 | opp_overlap 3125049 3125048 CCAAACTGCGGGACT TCGCCG GAT CGGCGA TTGTTCCGAAAAGGG TERM 3414 3125105 - 3125085 - R 76 -8.9 -4.08216 | overlap 3125086 CGATTGTTCCGAAAA GGGCCTGCC CTT GGCAAGCCG TGGCGCCGAAGGACG TERM 3415 3125104 - 3125086 - R 72 -12.4 -3.04715 | overlap 3125085 GATTGTTCCGAAAAG GGCCTGCC CTT GGCAAGCC GTGGCGCCGAAGGAC TERM 3416 3125294 - 3125276 - R 95 -14.6 -4.08216 | opp_overlap 3125273 CCAGCGGCCGGAAAA CCCGGATG GAT CATCCGGG TGGTCCATTCCAAAG TERM 3417 3125321 - 3125309 - R 73 -10.5 -3.59979 | GTGGTCCATTCCAAA GGCGC GAG GCGCC TTGGGAACATCGAAA TERM 3418 3125381 - 3125361 - R 72 -11.8 -3.33151 | overlap 3125359 CTTCCGAAACCAACA CGGGGACG ATGAG CGCCCCCG AAACCCTAAAGAAGC TERM 3419 3125464 - 3125441 - R 93 -7.3 -5.24129 | GGCCCCGATAAAAAA CCCCCGGAC GGTCTT GGCCGGGAG AGCTGGGTCATATAC TERM 3420 3125597 - 3125554 - R 72 -13.8 -2.53263 | opp_overlap 3125550 3125548 3125561 CCCAGCCCCAAGGCA CGCGCCATCCAGCCAGACCC GACA AGGACTGGCTGGATGGCTTA GGCGTCTTACTGAAC TERM 3421 3125561 - 3125590 + r 72 -13.6 -2.53759 | opp_overlap 3125554, overlap 3125550 3125548 CCAAGGCACGCGCCA TCCAGCCAGACC CGACAA GGACTGGCTGGA TGGCTTAGGCGTCTT TERM 3422 3125637 - 3125612 - R 72 -12.5 -3.05463 | AGGCGTCTTACTGAA CGATGCTGGCG ACGA CGCCGGCACCG ACGGTACGGCCACCC Rru_A2702 3126794 - 3125604 - | elongation factor Tu TERM 3423 3127879 - 3127841 - g 74 -12.4 -3.53811 | gap 1, overlap 3127825 3127824 3127842 GGCACCCTGGCCAAA TCGG-CCAGCGGCACCC TGGAAC GCGTGCCGCTGGTCCGC GCCATCAACCTGTCC TERM 3424 3127878 - 3127842 - g 75 -15.9 -2.72144 | gap 1, overlap 3127825 3127824 3127841 GCACCCTGGCCAAAT CGG-CCAGCGGCACCC TGGAAC GCGTGCCGCTGGTCCG CGCCATCAACCTGTC Rru_A2703 3127112 - 3128158 + | RNA methyltransferase TrmH, group 3 TERM 3425 3128328 - 3128303 - f 100 -8.3 -5.25699 | gap 1, opp_overlap 3128303 ACCAGATAAGAAAAA GGACGGTGTCTT GAA AAG-CGCCGTCC TTTTTTACATCCTAA TERM 3426 3128303 - 3128328 + F 100 -10.5 -5.1101 | gap 1, opp_overlap 3128303 ACCAGATAAGAAAAA GGACGGTGTCTT GAA AAG-CGCCGTCC TTTTTTACATCCTAA Rru_A2704 3128419 - 3128652 + | hypothetical protein TERM 3427 3128854 - 3128889 + F 76 -14 -3.05844 | gap 1, opp_overlap 3128877, overlap 3128851 TCCCTTTTCCGTTCG CCG-CCCTGGCGATCCT TAG AGGAGCGCAAGGGGCGG TCTTGACATCGCCAG TERM 3428 3128898 - 3128916 + F 89 -4.4 -5.28176 | GGGGCGGTCTTGACA TCGCCAGG GCT CAGGGCGA TTTTTTGTCCATGAG Rru_A2705 3128927 - 3129172 + | hypothetical protein Rru_A2706 3129215 - 3130003 + | ankyrin Rru_A2707 3130794 - 3130000 - | Alpha/beta hydrolase fold TERM 3429 3130231 - 3130216 - G 72 -11.8 -3.53811 | opp_overlap 3130227 3130228, overlap 3130226 CCGATCGGCGGGAAA GGCCGG AAAG CCGGCC AGGGTGGCCATTTCA TERM 3430 3130337 - 3130322 - G 73 -6 -4.36914 | overlap 3130324 TTTTGCGCCAGAAAA CGCCGG ATGC CCGGGG AAGGGATGCTGTCGG TERM 3431 3130772 - 3130803 + g 83 -4.4 -5.08011 | gap 1, overlap 3130774 CCCTCTCCCAGGCAT TGGGCGGCGA-GATC CAC GGTCATCGGCGTCTA TTTTTTGCCGGTTTT Rru_A2708 3131172 - 3130801 - | hypothetical protein Rru_A2709 3131851 - 3131399 - | thioesterase superfamily protein TERM 3432 3131480 - 3131467 - G 72 -6.7 -4.26076 | CCAGGGCGACGAAAA CGAAG ACGC CTTCG GTCACCTTGATCTTG TERM 3433 3131907 - 3131882 - H 90 -5.9 -5.30575 | overlap 3131883 GAAAAATCGAAAAAA GCCGGGGTCGG ATGA CCGGCGCCGGA ACGCTTTATCACCGG TERM 3434 3131906 - 3131883 - H 71 -9.4 -3.75905 | overlap 3131882 AAAAATCGAAAAAAG CCGGGGTCGG ATGA CCGGCGCCGG AACGCTTTATCACCG TERM 3435 3132969 - 3132956 - g 95 -9.5 -5.06414 | opp_overlap 3132959 3132964, overlap 3132958 GTCGGGCAATAAAAA GGGCG CGGC CGCCC TGACCGCCGAGGATG TERM 3436 3133089 - 3133059 - g 86 -6.8 -4.95957 | gap 1, opp_overlap 3133087, overlap 3133060 3133061 CAAACCAAGGAAAAA CTGGCCAGCCAGG AAGCCA CCCGGCTGGTC-G AACAGGCGCTGCGCG Rru_A2710 3131976 - 3133973 + | DNA topoisomerase IV subunit B Rru_A2711 3134505 - 3133993 - | GCN5-related N-acetyltransferase Rru_A2712 3135110 - 3134490 - | TetR family transcriptional regulator Rru_A2713 3135128 - 3135394 + | hypothetical protein TERM 3437 3135845 - 3135833 - f 84 -9.1 -4.48664 | overlap 3135835 TAAAGAGAGAATAAA GGGGT CAG ACCCC AAAGCGCTTGACCCC Rru_A2714 3136049 - 3137098 + | hypothetical protein Rru_A2715 3137965 - 3139068 + | acyltransferase 3 TERM 3438 3139266 - 3139277 + F 74 -5.8 -4.57569 | overlap 3139263 AGTGGCCTTGATCGT CAGC GGGC GCTG TTTTTACGGGGATGG TERM 3439 3139407 - 3139369 - f 78 -15.4 -2.50016 | overlap 3139368 3139366 CTTGACTATCAAGAT CTTAGAGCGAGGAGCG GATTTCA CGCTCACCGCTCTAAG GGGGCGGCCGATGAC TERM 3440 3140098 - 3140127 + G 72 -15 -2.72379 | overlap 3140088 TAGCCGCCGCCCGCT CCCAGGGTTGGC TAACGC GCCATCCCTGGG TGATTGGAGGATTGG Rru_A2716 3139485 - 3140588 + | acyltransferase 3 TERM 3441 3140615 - 3140594 - T 83 -15.9 -3.05384 | overlap 3140596 CCCCTCCTGATCCAA GACGGGGAG TCCC CTCCCCGTC ATCACCGCAAAAGAA TERM 3442 3140613 - 3140596 - T 72 -12.7 -3.08679 | overlap 3140594 CCTCCTGATCCAAGA CGGGGAG TCCC CTCCCCG TCATCACCGCAAAAG TERM 3443 3140654 - 3140632 - T 73 -4.8 -4.67048 | opp_overlap 3140637, overlap 3140637 TCACCGCAAAAGAAA GGAAAGGGGT CTG ACCCCTTTTA AAGAGAGCGGGTATA TERM 3444 3140637 - 3140649 + T 76 -9.1 -4.07568 | opp_overlap 3140632 3140637 GCAAAAGAAAGGAAA GGGGT CTG ACCCC TTTTAAAGAGAGCGG TERM 3445 3140649 - 3140637 - T 82 -9.1 -4.32131 | opp_overlap 3140637, overlap 3140632 GCAAAAGAAAGGAAA GGGGT CTG ACCCC TTTTAAAGAGAGCGG TERM 3446 3140702 - 3140672 - T 72 -13.3 -2.58249 | gap 1, overlap 3140671 GAGAGCGGGTATAAG GGGGCCGAAGGAGC TCTT GC-CCTTCGGCCTC ACAGGCCCCCAAGGC Rru_A2717 3141327 - 3140758 - | isochorismatase hydrolase TERM 3447 3143815 - 3143803 - g 75 -4.7 -4.58395 | overlap 3143804 CGCACCGCGCAAAAA GGCCG AAG CGGCG GAAACCGTGACCAAC TERM 3448 3144004 - 3143992 - g 72 -4.7 -4.56597 | overlap 3143994 CGCCCCGCGCAAAAA GGCCG AAG CCGCC CAGGCGGACGCCGAG Rru_A2718 3141659 - 3144058 + | DEAD/DEAH box helicase TERM 3449 3145544 - 3145572 + G 73 -13.7 -3.16742 | opp_overlap 3145523 GGCCGATTGGCGATT CGCCGATCTGGCC GCC GGCCTGGGCGGCG TTGGTCACCGTTGCC TERM 3450 3145739 - 3145719 - g 91 -16.1 -3.80573 | GTCACCACGATGAAA GGCCGCCAC GCC GCGGCGGCC GATGCCTGAAGCCCC Rru_A2719 3144087 - 3145748 + | phenylpyruvate decarboxylase Rru_A2720 3145992 - 3145804 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 3451 3146801 - 3146776 - g 70 -8.2 -3.90744 | gap 1, opp_overlap 3146797, overlap 3146777 GTCGCCTTGAAAGAA CTGGCCGCCGG CGTTC CCGGCGGGC-G CGTCAACATGGTCGC Rru_A2721 3146392 - 3148179 + | 2-oxoglutarate synthase, alpha subunit Rru_A2722 3148182 - 3149012 + | 2-oxoglutarate synthase, beta subunit TERM 3452 3149060 - 3149028 - f 78 -9.9 -3.96216 | gap 1, opp_overlap 3149027 3149026, overlap 3149029 GGCGCAGCTAAACAA TGCCGCGGTGAGGG GAAGAT CCCTCATCGCGG-A GACTTTGATCTGGCA Rru_A2723 3149133 - 3149636 + | rubrerythrin Rru_A2724 3149718 - 3150431 + | phospholipase/carboxylesterase TERM 3453 3152851 - 3152864 + G 71 -9.5 -3.86346 | GGTAATGCCCGAGCT GGGCG GTCT CGCCC TTTATGACCGCCTGC Rru_A2725 3150536 - 3153040 + | multi-sensor hybrid histidine kinase TERM 3454 3154384 - 3154398 + G 71 -12.8 -3.33696 | CGGGTGCTTGATCTG GCCGCC GAT GGCGGC TTCGTTCCCGGACGA TERM 3455 3154891 - 3154921 + G 72 -5.3 -4.31859 | GCCTATATCGCCAAG CCCTTTCCCCCCG AACAA CTGGAGGAAAAGG TTCTTGTTTTGTTCA Rru_A2726 3153037 - 3154980 + | response regulator receiver domain-containing protein TERM 3456 3155025 - 3155001 - T 85 -12.7 -3.79787 | opp_overlap 3154995 CGATAGCAAGGCAAA GCGTCGGCGCG CCC CGCTCCGGCGC GCCCGGATTCGCCTT Rru_A2727 3155838 - 3155047 - | hypothetical protein TERM 3457 3155712 - 3155683 - G 72 -8.6 -4.10161 | gap 2 GATCAGGCTGTAAAA GCCCCC-AG-CCAG CAGG CTGGGCCCGGGGGC GCGGCGGAAATCGGC Rru_A2728 3156641 - 3155961 - | NnrU Rru_A2729 3156824 - 3157387 + | hypothetical protein TERM 3458 3157454 - 3157424 - T 81 -8.2 -4.62069 | gap 1, overlap 3157425 3157427 3157428 CGCCTAGGCCAAAAA CCATCGCCGCCGG GCTCAG CCGGCG-CGGCGG ACGCGGCTCAGGTGA Rru_A2730 3157753 - 3157439 - | hypothetical protein TERM 3459 3158122 - 3158065 - g 72 -14.7 -2.78384 | gap 2 CTTCCCCGGACGACA CCCGCGCCCTCGGCCGCCCGGACGCTG GCCGGT CTGCGA-CGG-CTGCCGGGAGCGCGGG GGCCGACCTTGGGCG TERM 3460 3158317 - 3158294 - g 70 -10.9 -3.53012 | TCCGCCCCGGGGAAA GCCGGCCGG CCCTGC CCGGCTGGC TGTCGCGCAAACCCC TERM 3461 3158622 - 3158670 + G 74 -12.4 -3.55444 | gap 1, overlap 3158615 3158623 CGCCATCTTGGCCGG AGTCGGCCGTTGGCTGGCCGG GGCGCTGG CCGGCGAGCCGGCGG-CGACC TTTGGGCAATAGGCG TERM 3462 3158623 - 3158669 + G 75 -15.9 -2.73124 | gap 1, overlap 3158615 3158622 GCCATCTTGGCCGGA GTCGGCCGTTGGCTGGCCGG GGCGCTGG CCGGCGAGCCGGCGG-CGAC CTTTGGGCAATAGGC Rru_A2731 3158038 - 3158682 + | exopolysaccharide synthesis, ExoD TERM 3463 3159755 - 3159726 - g 76 -15.7 -2.90075 | gap 1 CGGCCGCCAATGATA GCGGCGCGCCGGTC GAG GAC-GGCGCCCCGC CCGTCGCCGCCGTGG TERM 3464 3160105 - 3160143 + G 79 -16.6 -2.97166 | overlap 3160101 3160118 CGATCTGGCCATCGC CCGCGCCCGGGGCTCG CGCTCGC CGCGTCGCGGGCGCGG TCTGCTTGATTACCT Rru_A2732 3158768 - 3160300 + | hypothetical protein TERM 3465 3160767 - 3160713 - g 74 -12.2 -3.57561 | gap 3 GCCTAAGCGGGCAAA GCCTGCCCGTCGCCTCGATCGCC-CTG GTCA CGGCGACGACCGAGGCG-CGCG-AGGC GGTATCGCTGTGGGC TERM 3466 3161072 - 3161093 + G 100 -13.7 -4.57569 | opp_overlap 3161060 GAAGCCGCCGGCCCG GCTTGGGCG GCGA CGCCCAGGC TTTTTGAGACAATCA Rru_A2733 3160457 - 3162208 + | glycosyl transferase family protein Rru_A2734 3162319 - 3163224 + | dTDP-4-dehydrorhamnose reductase Rru_A2735 3163221 - 3163853 + | hypothetical protein TERM 3467 3165589 - 3165629 + G 77 -13.3 -3.62046 | GGGCGACTGGCTGCG GGCGATGGAGATCGCCG AGTCCGC CGATGAGCTCCATCGCC TTGTTCGGCGGCTGG TERM 3468 3166308 - 3166322 + G 70 -4.2 -4.56597 | GCTTGTTCCGGCGCA CCGG GCCCTTG CCGG TTTTTCCGGCGACGG Rru_A2736 3163850 - 3166456 + | hypothetical protein Rru_A2737 3167910 - 3166462 - | glycosyl transferase family protein TERM 3469 3167614 - 3167597 - G 81 -5.5 -4.71426 | gap 1 GGGCCATCAAGAAAA GCCAG-GG CCA CCGCCGGC GAGTCCGCATCGATC TERM 3470 3167756 - 3167738 - G 72 -11.7 -3.53224 | GACGCCTTCGCCAAA GCGCCCT CGATC AGGGCGC GCCCCGCCTCATCGC Rru_A2738 3169529 - 3167907 - | glycosyl transferase, group 1 TERM 3471 3168378 - 3168343 - G 73 -3.8 -4.65895 | gap 1 CCGCGCACGGAAAAA CCCAGGCC-GGCGAACC TTT GGGCCACATGGCCCGAG CCGCAGCCGCAATCA TERM 3472 3169031 - 3169041 + g 83 -2.4 -5.1356 | overlap 3169015 CGATGATCTGCAGGG CCAG CAT CGGG TTTTTCTTCATCGCC Rru_A2739 3171988 - 3169526 - | hypothetical protein TERM 3473 3170838 - 3170824 - G 77 -7 -4.4767 | overlap 3170826 TGATCGACCAGAAAA CGGCCG TAC CGGCGG GGTGACGGGAGCCTT TERM 3474 3171532 - 3171493 - G 93 -11.2 -4.30844 | overlap 3171494 AGGCGATCAGCAAAA CCCCCGCCGCTCCCCCCT GCGA AGGCGGCGGCGGCAGGGC TGGCAACAGCCAGCG TERM 3475 3171531 - 3171494 - G 76 -14.7 -3.18024 | overlap 3171493 GGCGATCAGCAAAAC CCCCGCCGCTCCCCCCT GCGA AGGCGGCGGCGGCAGGG CTGGCAACAGCCAGC TERM 3476 3171885 - 3171844 - G 83 -8.5 -4.57569 | overlap 3171847 3171848 CCATCTGGCGAAAAA TCAGCCGCGCCGTGATCGG CGGC CCGACCTCGCCGCCGTCGA GCGCCCGGCCATAGA Rru_A2740 3173082 - 3171985 - | UDP-N-acetylglucosamine 2-epimerase TERM 3477 3172223 - 3172266 + g 74 -5.8 -4.56597 | CCAAGGATCGCCCCC TCCTCCTGCACCGTGCCG CTATCGCT CAGCACGCAGCGGGCGGA TTTTTCCAGGGCGAC TERM 3478 3172764 - 3172752 - G 84 -6.9 -4.8048 | CCTCCATATGAAAAA CCGGG ATG CCCAG GCGCTTGGCGACATA Rru_A2741 3174146 - 3173079 - | polysaccharide biosynthesis protein CapD TERM 3479 3174249 - 3174263 + r 84 -9.2 -4.56597 | GAACAGCTTTTTAGG GTGGCG CCT CGCCGC TTTTTAAAAGAGCGA Rru_A2742 3175823 - 3174279 - | O-linked N-acetylglucosamine transferase TERM 3480 3175279 - 3175236 - G 72 -11.7 -3.55444 | gap 2, overlap 3175237 GGCCGACTCCTCAAA GGCGCGCTGGTCGGCGTCGGC GATC GCC-ACGCCGACCT-CGCAGC GGCTGGCGTCATGAT Rru_A2743 3176834 - 3175827 - | radical SAM family protein TERM 3481 3176659 - 3176671 + g 75 -4.8 -4.65916 | opp_overlap 3176651 3176653, overlap 3176653 TCAAGCATACGTCCG GCGT AATGG ACGC TTTTCTTGAACTGGG Rru_A2744 3177580 - 3176831 - | hypothetical protein TERM 3482 3177390 - 3177431 + g 73 -10.8 -3.67517 | overlap 3177423 CAGATCCGCTGCGGT GGGCCGGTGCGCGC-GATCG GCAC CG-TCAGCCAGCGCCGGCCC TTTGGCGTCTTGATG TERM 3483 3177525 - 3177510 - G 79 -3.2 -5.02421 | AAAATCAAAAACAAA TCAACG CTGG CGATGA AATCGAAATAGCCGC Rru_A2745 3178707 - 3177571 - | hypothetical protein TERM 3484 3178073 - 3178059 - G 71 -2.7 -4.61868 | overlap 3178060 GATCGACACATAAAA CCGCC CCGGT GGCGT AATGGCGGGCCAGGA TERM 3485 3178282 - 3178258 - G 74 -12.7 -3.61517 | ATGCTCGGGCAACAA GGCCGCCGGTG TTC CGCTGGCGGCC AGGGCGCCCGGATGA TERM 3486 3178688 - 3178648 - G 71 -14.6 -2.5742 | gap 1, overlap 3178647 3178645 3178641 GGGAAAGATCAAGAT CGCCGC-CCCCCGGGTCAG CGGC CTGCCCCCCGGGCGCGGCG CCGCGCAAGGCGGCG Rru_A2746 3179894 - 3178704 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 3487 3179578 - 3179559 - G 91 -12.8 -4.1721 | ATCGACATCGCAAAA GGCCGGGC GGGC GCCCAGCC ACAAGCTGGCATTGG Rru_A2747 3180823 - 3180062 - | gluconate 5-dehydrogenase TERM 3488 3180768 - 3180789 + g 72 -4.3 -4.56775 | gap 1 AACCCCAGCCCCCGG CTGCTCCCGG TCA CCAGG-GCGG TTTTTCCGGCGAGAT Rru_A2748 3181680 - 3180985 - | ABC transporter component Rru_A2749 3182906 - 3181677 - | hypothetical protein TERM 3489 3182155 - 3182189 + g 87 -15.1 -3.8594 | gap 2 GCCGCCCCCAGATGG CTGGCCACGACCTCGGC GTC GTCGAGG-CG-GGCCAG TTTGATCTCGATCTT TERM 3490 3182835 - 3182816 - G 78 -6.4 -4.70319 | gap 1, overlap 3182819 TGATGAAAACGAAAA CGATCACCC CGA GGGCGA-CG CCGGCGATCAGCAGC Rru_A2750 3184110 - 3182911 - | secretion protein HlyD TERM 3491 3182967 - 3183001 + g 73 -14.8 -2.88544 | CGGTCAGGCCAAGGG GGGCCAGGGCCACGGC CTC GCCGGCGCTCAGGCCC TCTGTGACGATCACC Rru_A2751 3184819 - 3184292 - | hypothetical protein Rru_A2752 3186001 - 3184877 - | Signal transduction histidine kinase TERM 3492 3185079 - 3185094 + g 75 -11.8 -3.72576 | opp_overlap 3185071 ACCGAAAGCCGCCAA GCGCCG TCGG CGGCGC TTTCATAGGCGACCA Rru_A2753 3186952 - 3186086 - | transglutaminase-like Rru_A2755 3187777 - 3187409 - | hypothetical protein Rru_A2754 3187318 - 3187530 + | cold-shock DNA-binding protein family protein TERM 3493 3188010 - 3187999 - TfRH 76 -5.8 -4.58283 | GAAGGTTCTGAAAAA TGCC CCTC GGCA AATATGGACCTATGA Rru_A2756 3188671 - 3188162 - | hypothetical protein TERM 3494 3188510 - 3188479 - GfH 72 -11.6 -3.35679 | opp_overlap 3188485 CCGGGCGATTTATAA TGACGTGAAGGACG CCAT CTCCCTTCACGCCA GCCAGTTCGACGGGT TERM 3495 3188776 - 3188766 - gH 79 -6.8 -4.62471 | GCCAATGCGGAAAAA GCCA AGG TGGC GATGGTCAACGCCGT TERM 3496 3189056 - 3189075 + GH 76 -9.2 -4.08216 | CGTGCTCGCCCTGCT CGCCGCCA TCCT TGGCGTCG TTTTCGCCGCCGTGA Rru_A2757 3188670 - 3190445 + | chemotaxis sensory transducer TERM 3497 3190717 - 3190764 + G 72 -11.8 -3.53012 | opp_overlap 3190727 TTCAACTGGGCGCCA TGCCCAACCATCCGCCGGTGAT CGCC ATTTCCGGCGGCGGGGCGGGCA TTTCGGCCGAAACGG Rru_A2758 3190509 - 3190877 + | response regulator receiver domain-containing protein TERM 3498 3190909 - 3190890 - T 90 -15 -3.53761 | opp_overlap 3190883, overlap 3190879 TAAGGGGGGCCGAAA GACGGCCC TTGC GGGCCGTC CCGGCTTATGACCCC Rru_A2759 3192580 - 3190931 - | hydroxylamine reductase TERM 3499 3192223 - 3192204 - G 75 -11.4 -3.73224 | gap 1 CCAGTGCCGACCAAA CCGGCC-CG CGT CGAGGCCGG CTGCCACAGGGCGGG TERM 3500 3192808 - 3192855 + r 100 -19.3 -4.30576 | opp_overlap 3192830, overlap 3192810 GCCCGGGTCTTGCGC TGTTAGCGCGGTGTGCGGGAA ATCCGG TCCCCGCATACCGCGCTAAGA TTTTCATGGTCAAGC TERM 3501 3192810 - 3192853 + r 100 -21.9 -2.50493 | opp_overlap 3192830, overlap 3192808 CCGGGTCTTGCGCTG TTAGCGCGGTGTGCGGGAA ATCCGG TCCCCGCATACCGCGCTAA GATTTTCATGGTCAA Rru_A2760 3193140 - 3192913 - | hypothetical protein TERM 3502 3192942 - 3192959 + g 81 -4 -5.00616 | CGTTCGCCACGTAGC CGCGGG CGCATT CCGGCG TTTTTTCAACGGCGG Rru_A2761 3194507 - 3193350 - | acyltransferase 3 TERM 3503 3193851 - 3193833 - G 79 -3.9 -4.87665 | gap 1 TTTTATCCACAAAAA TGC-GGAA CACA TTCCAGCA ACAAACTCAAATAGC TERM 3504 3193999 - 3193988 - G 79 -3 -5.01422 | CGACAGAAAAAGAAA TGAA AACT TTCA ACAACCATGTTTTTT TERM 3505 3195122 - 3195090 - R 85 -3.9 -5.41746 | AACTCTTCAAAAAAA CGCACATCGCCCCCC GCA GGGCGGAAATCAGCG AAAACCGAACCAATT Rru_A2762 3195635 - 3195117 - | hypothetical protein TERM 3506 3195375 - 3195363 - G 80 -9.1 -4.2243 | opp_overlap 3195369 ATAAAGATCGGAAAA CACCG TGC CGGTG GCGATGCCTTGGCTT Rru_A2763 3198094 - 3195632 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3507 3197128 - 3197084 - G 91 -16.3 -3.89212 | opp_overlap 3197094 GAGCGACAGATGAAA GGCCGCGCCATCGGCCCGCCG CGC CGGCAGATCGATTTCACGGCC GCGCAAGGCCAAAAG Rru_A2764 3199852 - 3198383 - | hypothetical protein TERM 3508 3198483 - 3198515 + g 72 -4.9 -4.45261 | gap 1, overlap 3198460 CCGGTATCGATATTG GGGTTGTC-GTTGA CCTCGA TCACCAGACAGCCC TTTTCGGTTTGTTTG Rru_A2765 3200985 - 3199864 - | GCN5-related N-acetyltransferase TERM 3509 3200986 - 3201001 + r 80 -11.8 -3.8046 | overlap 3200993 TCGCAGGGTCATCAT CCGGCC TCCT GGCCGG TTTCAGGTTTTTCGA Rru_A2766 3201266 - 3201030 - | hypothetical protein TERM 3510 3201196 - 3201209 + g 70 -3.8 -4.56597 | opp_overlap 3201196 GTGACCCGCACCAAA TCCG GACTGG CGGA TTTTTCGCCGGGGGG TERM 3511 3201316 - 3201303 - R 75 -2.3 -5.00616 | overlap 3201304 3201305 GCCCGCCCCAAAAAA GTCGC CAAC GCCAC CCGGGGGCGCTTCGA Rru_A2767 3202999 - 3201617 - | ribonuclease G (RNase G) TERM 3512 3202759 - 3202730 - G 70 -10.5 -3.66803 | opp_overlap 3202747 GCGCAACACCTGAAA GGCCAGCAGGGCG CCTT CGCCGGGCAGGCC GCGCGGCGTGTCCTC TERM 3513 3202854 - 3202872 + g 72 -11.6 -3.53811 | GCGGCGGTCACCCGA CCGGCGAC GAT GGCGCCGG TTTCCACCGCATGGG Rru_A2768 3203624 - 3202992 - | Maf-like protein TERM 3514 3203113 - 3203101 - G 73 -6.2 -4.40358 | AGCCAGCGCACAAAA GCCG CCGCC CGGC CCTGGATGGCATAGC TERM 3515 3203422 - 3203381 - G 73 -12.9 -3.28924 | gap 1, opp_overlap 3203408 TATCCCCCGCCAGAA CCCAGGCGCCCG-GGTGGCG TGG CGCCACCGCCAGGGCCTTGG CCCGGGCGACGCGCT TERM 3516 3203693 - 3203679 - R 72 -11.4 -3.39505 | opp_overlap 3203676 3203674 AGGCCAGATCCATAA GGAGCC TCA GGCTCC TAAATGTTTCGGCGA TERM 3517 3203742 - 3203767 + r 78 -14 -3.14132 | gap 1, opp_overlap 3203729 AATCGGCTCACGCCC GCCGGCGCCGG AGGGC CCGGCGC-GGC TTGCTACCCCGAGGG Rru_A2769 3204220 - 3203771 - | protein tyrosine phosphatase Rru_A2770 3204711 - 3204226 - | hypothetical protein hisD 3206018 - 3204714 - | histidinol dehydrogenase TERM 3518 3204898 - 3204886 - G 77 -10.5 -3.96327 | AGCCCCGACGAGAAA CGCGC CGT GCGCG AGGTTGGCAGCACAT TERM 3519 3205660 - 3205634 - G 75 -11.4 -3.64703 | overlap 3205650 CGCCCGGCACGTAAA GCCCGGCGGCGG AAA CCGCCGTCCAGC GCTGGCCCAGCCGCA hisG 3206685 - 3206002 - | ATP phosphoribosyltransferase catalytic subunit TERM 3520 3206397 - 3206344 - G 89 -14.6 -4.07687 | gap 2 ATCCTCGGCCGAAAA CCGCTCGGCCTCGGCCACCGACAGCC GGCA GGC-GCCGATGCCC-AGGTCAAGCGG GGCGTAAAGCTCGGG TERM 3521 3206983 - 3206970 - g 83 -3.8 -5.17353 | ACAGCCATGAAAAAA GCCA TCGCCC TGGC CACCCTTCTCTCGGG Rru_A2773 3206961 - 3207605 + | hypothetical protein Rru_A2774 3209822 - 3207633 - | chemotaxis sensory transducer TERM 3522 3207918 - 3207930 + g 78 -10.5 -4.11216 | GGTCAGCCGGCCGGT CGCCG AAA CGGCG TTTTCCACATCGGCG TERM 3523 3208020 - 3208077 + g 86 -18.3 -3.14132 | gap 1, overlap 3208018 3208071 GTTCTTGACCTCGCT CGCCACCA-CGGCGAATCCCTTGCCGGC GTT GCCGGCATGGGCGGCTTCGATGGTGGCG TTCATCGCCAGAAGA TERM 3524 3209792 - 3209749 - G 88 -10.3 -4.38712 | opp_overlap 3209791, overlap 3209751 GCCACCGCCAGAAAA GACGTCAGGATCCGCTT GCCGATACCA AAGCGGATCCCGCCGGC CGTCGCCGACCGCTT TERM 3525 3209790 - 3209751 - G 79 -11.5 -3.80133 | overlap 3209749 CACCGCCAGAAAAGA CGTCAGGATCCGCTT GCCGATACCA AAGCGGATCCCGCCG GCCGTCGCCGACCGC Rru_A2775 3210829 - 3210020 - | dienelactone hydrolase TERM 3526 3210412 - 3210381 - G 100 -13.7 -5.27335 | CCGCCGAAACAAAAA CCGATGGCGGCGA CCTTGC CCGTCGCCATCGG CGCGCCGCCGGCCTG Rru_A2776 3211678 - 3210902 - | ChaC-like protein TERM 3527 3212154 - 3212171 + G 74 -7.7 -4.25104 | overlap 3212155 TCTATCCGCTGCTGG TGATGGC CATG GCCATCG TTTTGCTGGGCGAGC TERM 3528 3212335 - 3212368 + G 76 -2.4 -4.96848 | gap 2, overlap 3212337 CACGGTGCTCACCCG CATGGT--CAGCGCTG ATGA CAGCGCCGGCACCACG TTTTTGTATACGGGA Rru_A2777 3211736 - 3212698 + | hypothetical protein TERM 3529 3213046 - 3213028 - g 71 -9.6 -3.87149 | overlap 3213023 TCGACCAAAGCGAAA TCGAGATC ATC GACCTCGA CTATGAAGATTATCA Rru_A2778 3212775 - 3213065 + | plasmid maintenance system killer Rru_A2779 3213075 - 3213407 + | plasmid maintenance system antidote protein TERM 3530 3213504 - 3213453 - T 100 -19.4 -4.56597 | gap 1, overlap 3213454 GGGTCGCTTTAAAAA CGGCAAGCCGCGAGCGGAGGGACCG CAA CGG-CCGTCCGCTCGCGACATCCCA TCCCGCAAGGATTAG TERM 3531 3213503 - 3213454 - T 100 -20.7 -3.33744 | gap 1, overlap 3213453 GGTCGCTTTAAAAAC GGCAAGCCGCGAGCGGAGGGACCG CAA CGG-CCGTCCGCTCGCGACATCCC ATCCCGCAAGGATTA Rru_A2780 3214346 - 3213516 - | hypothetical protein Rru_A2781 3215579 - 3214359 - | hypothetical protein TERM 3532 3215609 - 3215639 + r 72 -12.6 -3.10409 | overlap 3215600 GGTCGTCCCACCTCA CCGCCAGGGCGA GGAATAA TCGTCTTGGCGG TTAGATGAATTAATC Rru_A2782 3216616 - 3215711 - | LysR family transcriptional regulator TERM 3533 3217002 - 3217016 + G 83 -12.8 -4.05747 | CGCGAGACCCGTCCG GCCGCC TCG GGCGGC TTTCTGTCGGGTCTG Rru_A2783 3216771 - 3217331 + | periplasmic ligand-binding sensor protein TERM 3534 3217440 - 3217393 - f 100 -16.4 -4.07687 | gap 2, overlap 3217395 ACCTCGCCCTGAAAA CAGCCACAGCGGACGGAGCCGG TTCCCC CCGGACCCGTCCGCT-TGGC-G CTGGCCCTCGCCCTG TERM 3535 3217439 - 3217395 - f 100 -20.1 -3.63744 | gap 1, overlap 3217393 CTCGCCCTGAAAACA GCCACAGCGGACGGAGCCGG TTCCCC CCGGACCCGTCCGCT-TGGC GCTGGCCCTCGCCCT TERM 3536 3217863 - 3217853 - g 72 -8.2 -4.14472 | opp_overlap 3217862, overlap 3217854 CGAATACGCCGAAAA GGGC AAC GCCC TGGTCATCGGCGAGG Rru_A2784 3217605 - 3218594 + | basic membrane lipoprotein TERM 3537 3219498 - 3219548 + G 77 -13.1 -3.56092 | overlap 3219540 3219540 ATCGCCACGAGATTG TCGGCATCGCCGGGGTGTCGGGC AATGG GCAAGCCACCCTGGCGGCGCTGA TTTCCGGGCTGGTCG Rru_A2785 3218636 - 3220171 + | ABC transporter component TERM 3538 3221038 - 3221076 + G 91 -13.8 -4.25104 | opp_overlap 3221036 TGGCCCAATTGAACC CGCTGGGCGTCATCGCCG CGG CGGTGATGGTGGCCGGTG TTTTCGTCGGCGCCG Rru_A2786 3220161 - 3221210 + | inner-membrane translocator TERM 3539 3221795 - 3221773 - g 75 -9 -4.07885 | overlap 3221774 CATGGTCGGCGAAAA CCCGGCCGCC GCC GACGCCCAGG GCATCAGCGTCACCG Rru_A2787 3221228 - 3222169 + | inner-membrane translocator TERM 3540 3222622 - 3222606 - g 75 -4.4 -4.58283 | gap 1, opp_overlap 3222617 GAAGTCCGCGAAAAA GTC-GCC CCCT GGCTGAC CTTGCAGCTTGTCGC Rru_A2788 3222171 - 3223493 + | cytosine deaminase Rru_A2789 3225155 - 3223449 - | major facilitator superfamily protein MFS_1 Rru_A2790 3225309 - 3225821 + | MarR family transcriptional regulator Rru_A2791 3225908 - 3226372 + | deoxyuridine 5'-triphosphate nucleotidohydrolase thyX 3226427 - 3227284 + | FAD-dependent thymidylate synthase TERM 3541 3227659 - 3227690 + G 75 -14.4 -3.29144 | overlap 3227660 TGGTTTGGCGCGCTT TGCCGTCGAGCGCC GGGC GGTGATCGACGGCG TTCTGGCGGCGCTGG TERM 3542 3227660 - 3227689 + G 74 -15.7 -2.57344 | overlap 3227659 GGTTTGGCGCGCTTT GCCGTCGAGCGCC GGGC GGTGATCGACGGC GTTCTGGCGGCGCTG TERM 3543 3227763 - 3227752 - g 75 -7.2 -4.37886 | TGATCCCGGACAAAA GCGC AATG GCGC CTGGTGGGGCTGGGG Rru_A2793 3227291 - 3228472 + | hypothetical protein TERM 3544 3229165 - 3229111 - g 73 -12.9 -3.33605 | gap 2 AAATACAAGGACCAA CTCGCCCCCCTGCCCAGCCGACTGGCC AGC GACCAATCGGC-ATA-AGGGCGGCGAG ACAGCATCGCTCTAA Rru_A2794 3228568 - 3229155 + | dCTP deaminase Rru_A2795 3229581 - 3229177 - | hypothetical protein Rru_A2796 3231861 - 3229705 - | heavy metal translocatin P-type ATPase TERM 3545 3229889 - 3229851 - G 95 -16.7 -4.07568 | gap 1, opp_overlap 3229882 3229884, overlap 3229824 TGCCGTTGTGCAAAA GCGCCGTCGCCA-CCGGC GACA GCCAGCCGGCCACGGCGC CGAACATCACCGCCG TERM 3546 3231601 - 3231562 - G 100 -21.4 -3.21416 | overlap 3231543 CAGGGCGAGGATCAA GGCACCGCCCGCCAGCAG GCGG CTGCCATCGGGCGGCGCC CCCCCCTGATCGGCC Rru_A2797 3232541 - 3231909 - | hypothetical protein TERM 3547 3232042 - 3232053 + g 76 -2.2 -4.87665 | overlap 3232037 CAAAGCGAGACCAGC GACT GCAG GGTC TTTTTCTGGATCGAC TERM 3548 3232496 - 3232524 + g 73 -11 -3.71284 | gap 2, overlap 3232496 TGGCCGGACCTTGGG CGCC-C-GGCGCCG AAG CGGCGCCAGCGGTG TTCTGTTCGTGCGAC Rru_A2798 3232906 - 3232541 - | hypothetical protein TERM 3549 3232841 - 3232885 + g 100 -13.5 -4.40804 | gap 1, opp_overlap 3232839 3232840, overlap 3232840 CCGCACCAGCAAATC GGCCGGCGCCGTTGGTCCGC CGACCC GCAGGCCGACGGC-CCGCCC TTTTGTCCAGTCCTC TERM 3550 3233020 - 3232979 - R 78 -10.8 -3.89614 | gap 1, overlap 3232980 TTGAAGTCTTACAAA GGCCGCAGGACCCGCGCGA CCATC TCGCGCAGATCC-GCGTCG GCAAGGGTCAAACAC TERM 3551 3233019 - 3232980 - R 79 -14.3 -2.93447 | gap 1, overlap 3232979 TGAAGTCTTACAAAG GCCGCAGGACCCGCGCGA CCATC TCGCGCAGATCC-GCGTC GGCAAGGGTCAAACA Rru_A2799 3233301 - 3232972 - | hypothetical protein TERM 3552 3233404 - 3233427 + H 76 -12.4 -3.31269 | AATTCCGCTCAAGCC CGCCCGCC ACCCCACC GGCGGGCG TTCATATCCTCTCGG Rru_A2800 3233551 - 3234003 + | hypothetical protein TERM 3553 3234034 - 3234060 + T 100 -17.3 -4.18018 | GGCCCGCCCTCGCCA GGGCGGCTTCC CCAGC GGAGGCCGCCC TTTTCCATGCCCGGG Rru_A2801 3234539 - 3234078 - | thiol-disulfide interchange protein TERM 3554 3234483 - 3234497 + g 77 -12.8 -3.65314 | ATCGGGAGCCTTGGC GCCGGC GCG GCCGGC TTCTTCCGGCTTGCA Rru_A2802 3234736 - 3234984 + | cytochrome c, class I Rru_A2803 3235499 - 3234981 - | putative thioredoxin Rru_A2804 3236211 - 3235480 - | ABC transporter component Rru_A2805 3237397 - 3236216 - | hypothetical protein TERM 3555 3236474 - 3236486 + g 78 -10.5 -4.07885 | overlap 3236446 GATGGCCCGGTTATC GGCGC CCA GCGCC TTTTGCAGGCCGATC Rru_A2806 3238673 - 3237384 - | hypothetical protein Rru_A2807 3240144 - 3238675 - | YHS TERM 3556 3238904 - 3238894 - G 70 -8.2 -3.90762 | overlap 3238895 CACTTCCGAAAAATA GCGG GCG CCGC GTTCCAATTCGGATT TERM 3557 3239366 - 3239318 - G 79 -13.1 -3.72576 | gap 1, overlap 3239298 3239301 3239319 3239364 3239365 GCCGCGCCCAGGAAA GCC-GCCGAGCCGACGGCGGTG CGCAGC CAGCGCCGTCGGGTCAGAAGGC GGGCGCGGTCCTTGC TERM 3558 3240224 - 3240182 - R 100 -24.2 -4.59853 | CCAATCCTTGAAAAA GCGATGCGACCGGATCGGGC CTT GCCTGATCCGGTCGCGTCAC CCCAGGTGAAGTCCG Rru_A2808 3240775 - 3240245 - | hypothetical protein TERM 3559 3240870 - 3240880 + r 95 -6.8 -5.40072 | overlap 3240859 TTAACGGGCTCCTCC GACC CGT GGTC TTTTTTTGCCCGACG Rru_A2809 3242920 - 3240938 - | Iron permease FTR1 TERM 3560 3241270 - 3241250 - G 79 -16.1 -2.88544 | opp_overlap 3241266 GCCCAGCCCTACACA GCCGACGGC GAA GCCGCCGGC GATGGCGAACAGCCC TERM 3561 3243065 - 3243051 - H 80 -11.4 -3.78312 | overlap 3243055 AAACCACCCATGAAA CCGACG GTT CGTCGG AAAAACCGCCGGTCT TERM 3562 3243085 - 3243071 - H 70 -4.9 -4.56597 | overlap 3243055 3243072 GGTTCGTCGGAAAAA CCGCC GGTCT GGCGA CGTTCCATGGCGTTC Rru_A2810 3243162 - 3244304 + | saccharopine dehydrogenase Rru_A2811 3244402 - 3245727 + | hypothetical protein Rru_A2812 3245711 - 3246382 + | molybdenum cofactor guanylyltransferase TERM 3563 3246625 - 3246603 - g 76 -6.2 -4.56597 | GCGCGGCCTGAAAAA GGGCGACG TGCTGAG CGTGGCCC AGTTGGCCGGCATCA Rru_A2813 3246427 - 3246927 + | GTP cyclohydrolase subunit MoaC Rru_A2814 3247036 - 3247287 + | molybdopterin synthase subunit MoaD TERM 3564 3247689 - 3247679 - g 79 -2.4 -5.00616 | overlap 3247686 CCCTTCTGGAAAAAA GAGG AAA CCGC CGAGGGACCGCGGTG Rru_A2815 3247292 - 3247780 + | molybdopterin synthase subunit MoaE Rru_A2816 3247917 - 3248495 + | TetR family transcriptional regulator TERM 3565 3248622 - 3248584 - T 100 -17.5 -4.08767 | gap 1, opp_overlap 3248578, overlap 3248585 3248588 3248611 TCCATGCCGCCAAAA GCGATCGGGCCGCCCTTC TTGC GAAAGGCGGCCCGAA-GC GGACGGTTCGATGAG TERM 3566 3248623 - 3248585 - T 87 -17.5 -3.05046 | gap 1, opp_overlap 3248578, overlap 3248584 3248588 3248611 CCATGCCGCCAAAAG CG-ATCGGGCCGCCCTTC TTGC GAAAGGCGGCCCGAAGCG GACGGTTCGATGAGA TERM 3567 3248619 - 3248588 - T 100 -22.4 -2.74605 | opp_overlap 3248578, overlap 3248584 3248585 3248611 TGCCGCCAAAAGCGA TCGGGCCGCCCTTC TTGC GAAAGGCGGCCCGA AGCGGACGGTTCGAT Rru_A2817 3248997 - 3248647 - | phasin TERM 3568 3249163 - 3249215 + r 85 -9 -4.64861 | gap 1, opp_overlap 3249170 3249171 3249172, overlap 3249173 AGTCCAAAGGGGGGC GCAAAAAGTCCGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCGT-TTTCAAGC TTTCTTTTCGACCGC TERM 3569 3249209 - 3249170 - R 100 -15.6 -4.56775 | opp_overlap 3249163 3249173, overlap 3249171 3249172 AGGGGGGCGCAAAAA GTCCGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCGTTT TCAAGCTTTCTTTTC TERM 3570 3249208 - 3249171 - R 95 -19.1 -3.33744 | opp_overlap 3249163 3249173, overlap 3249170 3249172 GGGGGGCGCAAAAAG TCCGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCGTT TTCAAGCTTTCTTTT TERM 3571 3249207 - 3249172 - R 100 -22.6 -2.60032 | opp_overlap 3249163 3249173, overlap 3249171 3249170 GGGGGCGCAAAAAGT CCGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCGT TTTCAAGCTTTCTTT TERM 3572 3249173 - 3249206 + r 100 -23.9 -4.18763 | opp_overlap 3249172 3249171 3249170, overlap 3249163 GGGGCGCAAAAAGTC CGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCG TTTTCAAGCTTTCTT TERM 3573 3249308 - 3249257 - R 70 -10.6 -3.54741 | gap 1 GATCAGCCGGCCAAA GCCGCCTCGATCGCCGCCAGGGCCG CGC CGGCCTGGGCGCC-ATCGGGGCCCC CGGCCTGGGCCATGT alaS 3251895 - 3249244 - | alanyl-tRNA synthetase TERM 3574 3252178 - 3252148 - R 70 -4.6 -4.49937 | gap 1 GGAAGAACACGAAAA GCGGGCGTCAGGC TTCGTC GCC-GACTCCGGC GGCGCCACCGGCGTC Rru_A2819 3253255 - 3252155 - | RecA protein Rru_A2820 3255854 - 3253365 - | multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA TERM 3575 3254953 - 3254921 - G 70 -13.3 -3.01712 | GGGCGCCGTCGAACA GCCAGGGCCGCCGAC GCA GCCAGCCGCCCTCGC CCGCCGTCGGCGCGG TERM 3576 3255670 - 3255633 - G 70 -12 -3.43071 | gap 3, overlap 3255634 TTCGATATCAAGCAA GGCGGCGGCGGCC-CCGCC GCG GGCGGCGGCCTC-GCC-CC ATTGGGCGAAGCGGC flhB 3256926 - 3255856 - | flagellar biosynthesis protein FlhB TERM 3577 3256328 - 3256304 - G 73 -11.3 -3.71649 | overlap 3256297 TTCTGAAAGGCGAAA TCGGCGGCGGC GAT GGCGCCGACGA TGGTGACCACCGAGA TERM 3578 3256369 - 3256353 - G 88 -10.1 -4.33274 | opp_overlap 3256352 3256353, overlap 3256347 CCGAGATCAGCAAAA CCACCAG AAG CCGGTGG ATTTGCCCCAGGGTG TERM 3579 3256751 - 3256740 - G 81 -3.6 -5.06414 | GTTGCTCAAGAAAAA CGCG GACC CGCA GCGCCACCTTGTCGG fliR 3257749 - 3256988 - | flagellar biosynthesis protein FliR TERM 3580 3257899 - 3257842 - R 95 -20.2 -3.12142 | opp_overlap 3257845 3257847, overlap 3257840 3257845 3257847 TCTAGATTCAATAGA TTAGAGCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGCTCTGT GGTCGGCCCCGGCCG TERM 3581 3257845 - 3257896 + r 100 -26.3 -2.78384 | opp_overlap 3257840 3257842 3257845 3257847, overlap 3257847 AGATTCAATAGATTA GAGCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGCTC TGTGGTCGGCCCCGG TERM 3582 3257896 - 3257845 - R 100 -26.3 -2.76589 | opp_overlap 3257845 3257847, overlap 3257840 3257842 3257847 AGATTCAATAGATTA GAGCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGCTC TGTGGTCGGCCCCGG TERM 3583 3257847 - 3257894 + r 100 -23.1 -2.94099 | opp_overlap 3257845 3257840 3257842 3257847, overlap 3257845 ATTCAATAGATTAGA GCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGC TCTGTGGTCGGCCCC TERM 3584 3257894 - 3257847 - R 100 -23.1 -2.92442 | opp_overlap 3257847 3257845, overlap 3257845 3257840 3257842 ATTCAATAGATTAGA GCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGC TCTGTGGTCGGCCCC Rru_A2823 3258180 - 3257926 - | flagellar biosynthesis protein FliQ fliE 3258588 - 3258268 - | flagellar hook-basal body protein FliE flgC 3259049 - 3258636 - | flagellar basal body rod protein FlgC Rru_A2826 3259541 - 3259083 - | flagellar basal-body rod protein FlgB TERM 3585 3259778 - 3259731 - g 78 -6.6 -4.57755 | overlap 3259777 AGCGATCAGACAAAA GGGGGCGGCCGGCCCGCGGGCG GAAG CGACCGCGAGAGGGGCAAACCC GACGAATCGCTGGCC Rru_A2827 3259707 - 3260078 + | hypothetical protein TERM 3586 3260163 - 3260151 - g 75 -9.1 -4.11692 | opp_overlap 3260162 CAGCGACCTGGAAAA GACCG CTT CGGTC GTGGCGACGGCGCTG TERM 3587 3260252 - 3260283 + G 70 -8.6 -3.94409 | gap 1, opp_overlap 3260229, overlap 3260253 TGCTGTGCAAGGCGA TCGCCG-CCCTGCCC CGC GATCAGGGACGGCGG TTTCTCGATCCTCTG Rru_A2828 3260101 - 3260610 + | hypothetical protein Rru_A2829 3260615 - 3261046 + | hypothetical protein fliP 3261043 - 3261837 + | flagellar biosynthesis protein FliP Rru_A2831 3263058 - 3261853 - | acyltransferase 3 TERM 3588 3262711 - 3262699 - G 73 -6.2 -4.38116 | overlap 3262700 CTGAGAAAAATCAAA GCCG CTGGC CGGC GGATCAAAAACAAAA TERM 3589 3262767 - 3262727 - G 100 -8.3 -5.3104 | opp_overlap 3262734 3262735, overlap 3262731 GGATCAAAAACAAAA TAAAGAAGCGCCCCCGTAT AAT ACATGGGAGCGATTCTTAA GAATCGTCGAATCAT TERM 3590 3262763 - 3262731 - G 95 -9.1 -5.098 | opp_overlap 3262734 3262735, overlap 3262727 CAAAAACAAAATAAA GAAGCGCCCCCGTAT AAT ACATGGGAGCGATTC TTAAGAATCGTCGAA TERM 3591 3262981 - 3262995 + g 72 -8.6 -4.07885 | overlap 3262969 CCATCCGCGCACGGC GTCGAT ATA ATCGAC TTTTACCGGACCGTC Rru_A2832 3266667 - 3263272 - | hypothetical protein TERM 3592 3264324 - 3264366 + g 100 -19.2 -3.72324 | overlap 3264332 GCTCCAGGCGCTTGC GCCGGGCATGGGGGGTCCAT TTC ATCGACCCCTCATCCTCGGC TTGTTGATAAGCCTG Rru_A2833 3267317 - 3266664 - | hypothetical protein TERM 3593 3267035 - 3267079 + g 80 -14.1 -3.73072 | opp_overlap 3267029 3267026 3267039, overlap 3267007 3267068 3267069 GCAACACCACGGCCA GATATTCGGTGGCCGCGCCGC GCG GCGGCACGGTCGCCGGACGGC TTTCCTCGGGCGGTT TERM 3594 3267075 - 3267039 - G 76 -15.7 -2.88861 | opp_overlap 3267035 3267068 3267069, overlap 3267029 3267026 CACCACGGCCAGATA TTCGGTGGCCGCGCCGC GCG GCGGCACGGTCGCCGGA CGGCTTTCCTCGGGC Rru_A2834 3267565 - 3267314 - | hypothetical protein Rru_A2835 3268088 - 3267582 - | hypothetical protein Rru_A2836 3269052 - 3268273 - | hypothetical protein TERM 3595 3269033 - 3269003 - G 77 -13.3 -3.53012 | gap 1, opp_overlap 3269000 TCCTGGCTGCGCAAA TGCGCGAGCGCCCT GTCC AGGGCGC-CGCGTA AGGTGGTGTCGATGG TERM 3596 3269116 - 3269084 - R 82 -8.9 -4.37886 | TCAGGTCCGACAAAA TCCGGGGCCGCCGGC GCT GGCGGCCTGCCCGGA AGCAGCCTCCCCACG Rru_A2837 3269726 - 3269337 - | response regulator receiver domain-containing protein Rru_A2838 3270610 - 3269894 - | hypothetical protein Rru_A2839 3271381 - 3270629 - | hypothetical protein fliM 3272532 - 3271378 - | flagellar motor switch protein FliM Rru_A2841 3273165 - 3272575 - | flagellar basal body-associated protein FliL TERM 3597 3272881 - 3272901 + g 77 -5.4 -4.66833 | gap 2, opp_overlap 3272872 3272875 3272874, overlap 3272875 3272874 GTAGAACACCGGCCC GGCGGCCACC GGA GG-GGC-GCC TTTTTCGCCTTCGCC Rru_A2842 3273501 - 3274238 + | hypothetical protein TERM 3598 3274252 - 3274240 - f 70 -4.7 -4.56702 | overlap 3274241 CGGGAACCAAATAAA GGCCG GAT CGGCG ACGCGATATAAGGAC TERM 3599 3274549 - 3274578 + G 77 -14.3 -3.36515 | opp_overlap 3274548 3274549, overlap 3274547 ACCAGCACTAATAAC GCCCTTGATCTGG CGAT CCAGGGCAAGGGC TATTTCCAGATCGAC flgG 3274276 - 3275061 + | flagellar basal body rod protein FlgG flgA 3275093 - 3276175 + | flagellar basal body P-ring biosynthesis protein FlgA TERM 3600 3276815 - 3276827 + G 70 -6.2 -4.18506 | opp_overlap 3276804 GAAACCGTCAGCATG CGGC TGGCC GCCG TTGTTTTGCAGATCC flgH 3276308 - 3277075 + | flagellar basal body L-ring protein TERM 3601 3277498 - 3277480 - g 83 -4.4 -5.02476 | overlap 3277468 ACACCGCCCAAAAAA CCTTCGAG CTG CACGACGG CGTGGACGAGGATAC Rru_A2846 3277230 - 3277586 + | hypothetical protein Rru_A2847 3278103 - 3277687 - | TraR/DksA family transcriptional regulator TERM 3602 3277955 - 3277973 + g 77 -11 -3.76492 | overlap 3277956 TCCTGCATGCCGCCT TCCTGGAG ACT CTCCAGGG TTTCCTCGGCTTCCC TERM 3603 3278149 - 3278137 - R 85 -2.6 -5.42265 | overlap 3278138 GGAAAGGACAAAAAA GCGA TGCAT CCGC TCGGGTTTGGCAACC TERM 3604 3278304 - 3278286 - R 72 -2.2 -4.82901 | opp_overlap 3278286 CTCCGTCGACAAAAA CCGGGCGC TTA ACGACTGG TTAACTTGGCGAGTT fliX 3278740 - 3278294 - | flagellar assembly regulator FliX TERM 3605 3278865 - 3278882 + H 70 -4 -4.59773 | opp_overlap 3278835 3278864 3278865, overlap 3278867 CGAAAGGGGAAAAAG CCGCCC CCCACC GGGCAG TTTTTGCCGATCGCC TERM 3606 3278977 - 3279033 + H 77 -3.4 -5.00616 | overlap 3278985 3278986 GCTGGCACGACATTA GCATGGTGATCGTCGCGTCCGTCCGC CCAGC GCGGCCCGACGCGGCGAATTTTAGTC TTTTTTGAACCACCG TERM 3607 3278985 - 3279025 + H 100 -14.6 -4.64361 | overlap 3278977 3278986 GACATTAGCATGGTG ATCGTCGCGTCCGTCCGC CCAGC GCGGCCCGACGCGGCGAA TTTTAGTCTTTTTTG TERM 3608 3278986 - 3279024 + H 95 -18.1 -3.36177 | overlap 3278985 3278977 ACATTAGCATGGTGA TCGTCGCGTCCGTCCGC CCAGC GCGGCCCGACGCGGCGA ATTTTAGTCTTTTTT TERM 3609 3279126 - 3279146 + G 100 -11.1 -5.52384 | overlap 3279127 GCGTCGGCCGCTTGA TCGCGGTCG CGC TGACCGCGG TTTTTTTGCTCGCGC TERM 3610 3279127 - 3279145 + G 82 -12.4 -3.90707 | overlap 3279126 CGTCGGCCGCTTGAT CGCGGTCG CGC TGACCGCG GTTTTTTTGCTCGCG flgI 3279071 - 3280222 + | flagellar basal body P-ring protein Rru_A2850 3280222 - 3280551 + | hypothetical protein TERM 3611 3281023 - 3280995 - g 73 -6 -4.3534 | gap 1 TCTGAACGAGGAAAA CGACGCCCTCGAT CGCC AT-GACGGCGCCG CCGTTCGCGCCCTGA Rru_A2851 3280555 - 3281361 + | hypothetical protein TERM 3612 3281397 - 3281368 - f 85 -12.1 -3.83205 | gap 1, opp_overlap 3281368 3281365 3281363 ACGCTTTAGAGCAAA TC-CCGCGCACGCC GTT GGCGAGCGCGACGA TGATTTGCTTGCTTA TERM 3613 3281467 - 3281418 - f 84 -17.2 -2.78384 | overlap 3281466 TGCTTGCTTATCAGA CTTTCGGAGCGGTGTGCGGGGA CAAGGT TTCCCGCACACCGCTCTAAACG ACGACGGACTAGCCG Rru_A2852 3281526 - 3283709 + | hypothetical protein TERM 3614 3284123 - 3284095 - g 100 -18.3 -4.44915 | opp_overlap 3284093 CAAGGACTTACAAAA CCGTGCCTTTGAG GCT CTCAAAAGCACGG AGTATTACCTCAACA TERM 3615 3284925 - 3284915 - g 81 -8.2 -4.56597 | opp_overlap 3284915 3284916, overlap 3284916 CCGGCTTTTGAAAAA GCCC TAC GGGC GATGGCGATCATCGC Rru_A2853 3283724 - 3285271 + | hypothetical protein TERM 3616 3285323 - 3285295 - T 93 -14.6 -3.75169 | CATCACTCTATGAAA GCGGCCAGCCTT GGGCG AAGGCTCGCCGC ACCGCATCAAAGGCC Rru_A2854 3287044 - 3285287 - | hypothetical protein TERM 3617 3285363 - 3285335 - G 79 -13.1 -3.74693 | overlap 3285336 CCGCACCGCATCAAA GGCCCCATCCCAA TCG CCGGGATGGGGCT GGCGGAACAGGCGGA TERM 3618 3285362 - 3285336 - G 79 -16.6 -2.84602 | overlap 3285335 CGCACCGCATCAAAG GCCCCATCCCAA TCG CCGGGATGGGGC TGGCGGAACAGGCGG TERM 3619 3285773 - 3285727 - G 71 -14.9 -2.62184 | TGCCGGCCCAGACCA GCCCCAGCCGACCCCGCCCCC CCGGC GGCAGCGGGGGCGCCAAGGGC GGCACCGGCGGCCGA Rru_A2855 3289854 - 3287041 - | hypothetical protein TERM 3620 3287787 - 3287777 - G 89 -3.2 -5.32699 | opp_overlap 3287777, overlap 3287769 3287779 TCAAACAGCAAAAAA CTGC GTG GCAA CCGCCACAGGGTTTC TERM 3621 3288374 - 3288393 + g 79 -7.8 -4.56597 | opp_overlap 3288374 TTGCTGTAATGGAAA GGCGGC ACCCGCTC GCCGCC TTTTTCCACGGCGAG TERM 3622 3288431 - 3288417 - G 74 -7.8 -4.2349 | opp_overlap 3288416 CGGCGAGATCGAAAA CCTCCA GGG CGGAGG CGTTTTCCATCAGGT TERM 3623 3289215 - 3289234 + g 86 -9.3 -4.57569 | overlap 3289202 AGGCCATCGGCGCGG CGCCATC GCGCAG GATGGCG TTTTTGAAGGCCTCC TERM 3624 3289920 - 3289878 - R 70 -4.5 -4.4648 | opp_overlap 3289891 3289894, overlap 3289880 ATCCTGACCAGAAAA GCGCGGATGGGGGCGGGCG GCTAT CGGCCGCTCCGTTCAGCCC GCCGTCGATTGCTGT Rru_A2856 3290228 - 3289914 - | putative flagellar protein FlaF Rru_A2857 3290685 - 3290239 - | flagellar FlbT TERM 3625 3290870 - 3290913 + r 85 -16 -3.17051 | opp_overlap 3290880, overlap 3290871 3290874 3290875 TATGCTTGATCCCTT TGAAGGAAAACGGCGGTCGG ACAC CCGACCGCCGTTCCCGTTCG TCTTCGTCGTCGGCG TERM 3626 3290871 - 3290912 + r 83 -17.3 -2.50016 | opp_overlap 3290880, overlap 3290870 3290874 3290875 ATGCTTGATCCCTTT GAAGGAAAACGGCGGTCGG ACAC CCGACCGCCGTTCCCGTTC GTCTTCGTCGTCGGC TERM 3627 3290874 - 3290909 + r 81 -13.2 -3.40163 | opp_overlap 3290880, overlap 3290871 3290870 3290875 CTTGATCCCTTTGAA GGAAAACGGCGGTCGG ACAC CCGACCGCCGTTCCCG TTCGTCTTCGTCGTC TERM 3628 3290875 - 3290908 + r 83 -16.7 -2.63616 | opp_overlap 3290880, overlap 3290874 3290871 3290870 TTGATCCCTTTGAAG GAAAACGGCGGTCGG ACAC CCGACCGCCGTTCCC GTTCGTCTTCGTCGT TERM 3629 3290903 - 3290880 - R 100 -19.6 -4.4078 | opp_overlap 3290875 3290874 3290871 3290870 CCCTTTGAAGGAAAA CGGCGGTCGG ACAC CCGACCGCCG TTCCCGTTCGTCTTC Rru_A2858 3291804 - 3290935 - | flagellin-like TERM 3630 3292141 - 3292156 + G 76 -2.4 -4.9218 | overlap 3292137 3292142 CCCTCCCCTTCCCGT CGCTGC GCGG GCGGCC TTTTTATGGTGCCTG TERM 3631 3293291 - 3293326 + G 70 -8.3 -3.90922 | gap 1, overlap 3293284 3293280 CACAGCGGCCCGCGC GGCGATGACCGCAAGC GGGTG GCTTTCG-TCAGCGCC TTCTTTCGCGCCCAT TERM 3632 3293725 - 3293755 + G 91 -12.5 -4.18018 | opp_overlap 3293681 ACGCCTCGTCCGCCT GCCCGGGCTGTCG ATCCG CTACAGCCCGGCC TTTTCGGTGGACGAC Rru_A2859 3292091 - 3294445 + | hypothetical protein Rru_A2860 3294481 - 3295125 + | hypothetical protein TERM 3633 3295332 - 3295365 + G 72 -6.8 -4.2558 | gap 2 ATCATGAGCGAGCTT TGGCGGATCTGCCGCC CAGG GGCG-CAGATCA-CCA TTTTCGTCCCCCATC Rru_A2861 3295122 - 3295700 + | hypothetical protein Rru_A2862 3295697 - 3296512 + | Alpha/beta hydrolase fold Rru_A2863 3297265 - 3296615 - | TetR family transcriptional regulator TERM 3634 3297363 - 3297381 + H 72 -13.2 -2.52464 | GCATGGTCCGGGGTG CCCGATGA CCG TCATCGGG TCCGTTCCCGGCGAC TERM 3635 3297383 - 3297404 + H 100 -13.7 -4.63218 | TGACCGTCATCGGGT CCGTTCCCG GCGA CGGGAGCGG TTTTCTTGCACCCAC TERM 3636 3298130 - 3298073 - g 74 -7.6 -4.25104 | opp_overlap 3298061 GTCGGCGGACCAAAA CGCCTCTTCGACTACCGC-CCAGGCGGC AACC ACCGCCCAGAGCG-CGGCCGATGACGCG GTGGCGACCGAAAAA Rru_A2864 3297432 - 3298244 + | signal transduction protein TERM 3637 3298286 - 3298251 - T 93 -16.1 -3.64703 | gap 1, opp_overlap 3298254, overlap 3298254 TTCGCCTGATCCAAA GAC-GGCGGGCTCCGG TCTCC CCGGGGCCCGCCTGCC TTGGCAAAGCGCTTA TERM 3638 3298254 - 3298282 + T 100 -21 -2.52464 | opp_overlap 3298251 3298254 GCCTGATCCAAAGAC GGCGGGCTCCGG TCTCC CCGGGGCCCGCC TGCCTTGGCAAAGCG TERM 3639 3298282 - 3298254 - T 88 -18.8 -2.64144 | opp_overlap 3298254, overlap 3298251 GCCTGATCCAAAGAC GGCGGGCTCCGG TCTCC CCGGGGCCCGCC TGCCTTGGCAAAGCG Rru_A2865 3300332 - 3298299 - | peptidase M24 TERM 3640 3299160 - 3299128 - G 75 -11.4 -3.74872 | opp_overlap 3299132, overlap 3299146 AGCCAGTGCAGGAAA CGCACCATCGCCA-GA CCA TCGCGGCGATGG-GCG GCGCGGCTACCTTCC TERM 3641 3299546 - 3299507 - G 91 -13.6 -4.28254 | gap 1, opp_overlap 3299508, overlap 3299508 3299511 CGCGAATATTGAAAA GCCA-GGCGATGCTGTCGG GGG CCGACAGCACCACCGCGTC TTGCCCGTCCTTGGT TERM 3642 3299544 - 3299508 - G 76 -15.1 -3.1647 | opp_overlap 3299508, overlap 3299507 3299511 GCGAATATTGAAAAG CCAGGCGATGCTGTCGG GGG CCGACAGCACCACCGCG TCTTGCCCGTCCTTG TERM 3643 3299541 - 3299511 - G 93 -19.8 -2.77519 | opp_overlap 3299508, overlap 3299508 3299507 AATATTGAAAAGCCA GGCGATGCTGTCGG GGG CCGACAGCACCACC GCGTCTTGCCCGTCC TERM 3644 3300245 - 3300191 - G 82 -16.4 -3.29471 | overlap 3300195 CGCCGATCAGATCAA GCCAGCCCTCGCCGCCCGC-CGCCGG AGCGG CCGCCGCGCCGGCGACCAGGG-TGGC GAGATCCCCAGGCGA TERM 3645 3300251 - 3300195 - G 100 -20.8 -2.5919 | gap 2, overlap 3300191 GATCAGATCAAGCCA GCCCTCGCCGCCC-G-CCGCCGGAGCGG CCG CCGCGCCGGCGACCAGGGTGGCGAGATC CCCAGGCGACAGGGC Rru_A2866 3301328 - 3300435 - | 50S ribosomal protein L11P methyltransferase TERM 3646 3301541 - 3301521 - H 71 -7.5 -4.25104 | opp_overlap 3301535 3301538 CGGGTCGTACCAAAA GACCAGACC TAT AGTCCGGCC GTGATTGGCAGATCC Rru_A2867 3301858 - 3302820 + | ornithine cyclodeaminase Rru_A2868 3302940 - 3304607 + | diguanylate cyclase Rru_A2869 3304764 - 3305426 + | exopolysaccharide synthesis, ExoD TERM 3647 3305996 - 3306007 + G 70 -3.6 -4.52589 | overlap 3305987 GATGGCCGCCTCCAA GCCG TTGA TGGC TTTTGTGTCGCGCCA Rru_A2870 3305472 - 3307040 + | integral membrane protein TerC TERM 3648 3307057 - 3307019 - T 100 -22.4 -3.31144 | opp_overlap 3307045, overlap 3306998 3307021 3307022 TCTCCACTTCGAGAA CACCGACGGCGAGGGGGC CTA ACCCCCTCGCCGCCGAGG CTCGCGAGAAGCCTA TERM 3649 3307055 - 3307021 - T 100 -23.6 -3.22475 | opp_overlap 3307045, overlap 3306998 3307019 3307022 TCCACTTCGAGAACA CCGACGGCGAGGGGGC CTA ACCCCCTCGCCGCCGA GGCTCGCGAGAAGCC TERM 3650 3307054 - 3307022 - T 100 -24.9 -2.53271 | opp_overlap 3307045, overlap 3307021 3307019 CCACTTCGAGAACAC CGACGGCGAGGGGGC CTA ACCCCCTCGCCGCCG AGGCTCGCGAGAAGC Rru_A2871 3308245 - 3307070 - | peptidase M20D, amidohydrolase Rru_A2872 3308733 - 3308242 - | L-2-amino-thiazoline-4-carboxylic acid hydrolase TERM 3651 3308689 - 3308679 - G 72 -8.2 -4.08216 | CCATTTCGTCGAAAA CGCC CTT GGCG AAAGCGGCTTCTATG Rru_A2873 3309976 - 3308792 - | extracellular ligand-binding receptor TERM 3652 3310272 - 3310320 + G 76 -15.9 -2.87211 | CAACCCGGACCCTGG CCGGTGAGACCCGCGCCGACC TGGCGGT GATCGGCGCCGGCGTCACCGG TCTGTCCACGGCGCT TERM 3653 3311349 - 3311362 + G 75 -9.5 -4.11484 | AACTGGCCCGGGCGG CGGCG GGAA CGCCG TTTTCCCAGCTTGCC Rru_A2874 3310175 - 3311482 + | FAD dependent oxidoreductase TERM 3654 3311484 - 3311505 + T 75 -13.7 -2.92924 | gap 1, opp_overlap 3311470 3311467 3311468 3311483, overlap 3311488 ACGGCCGCGACTAAG GCCG-CGCCG CCT CGGCGGCGGC GTTTCCTGGTTTCGC TERM 3655 3311488 - 3311506 + T 86 -13.1 -3.8901 | opp_overlap 3311470 3311467 3311468 3311483, overlap 3311484 CCGCGACTAAGGCCG CGCCGCC TCGGC GGCGGCG TTTCCTGGTTTCGCA TERM 3656 3311523 - 3311579 + T 79 -9.6 -4.208 | gap 3, opp_overlap 3311535 TTCCTGGTTTCGCAA CGCCAGCCAAATCGTTCA-CT-CCCCG CATTGC CGGGGAACCTGAACGGA-TGGCTGGCG TTTGTGCTTTTACGA TERM 3657 3311856 - 3311894 + T 100 -18.9 -3.55761 | gap 1, overlap 3311857 3311860 CGCCCCTGCCCCTCT G-CGACCACCCCCGGCGC CCAC GTGCCGGGGGTGGTGGTC TTTAGGCCCTGGGTG TERM 3658 3311857 - 3311892 + T 100 -22.6 -3.35597 | overlap 3311856 3311860 GCCCCTGCCCCTCTG CGACCACCCCCGGCGC CCAC GTGCCGGGGGTGGTGG TCTTTAGGCCCTGGG TERM 3659 3311860 - 3311889 + T 100 -22.9 -2.84504 | overlap 3311857 3311856 CCTGCCCCTCTGCGA CCACCCCCGGCGC CCAC GTGCCGGGGGTGG TGGTCTTTAGGCCCT Rru_A2875 3312813 - 3311896 - | LysR family transcriptional regulator TERM 3660 3312286 - 3312253 - G 72 -13.1 -3.14132 | gap 1, opp_overlap 3312258 GGCGTGGTCGACCAA GGCGC-GCGGGGTG GCGGGAA CGCCCCGCCGCGCC AGATAACTTGGGGCG TERM 3661 3312628 - 3312592 - G 70 -10.9 -3.54424 | overlap 3312603 GGCGATCTCGCCAAA GGCCGGACCAA-GCCGG TCGAG CAGGCGTTGG-CCGGCC TCGGTCGGCGTCACG Rru_A2876 3312945 - 3313940 + | aldo/keto reductase TERM 3662 3313979 - 3313946 - f 100 -15.4 -5.60993 | gap 1 GCGGCCATAAAAAAA GACGGGACGCCC-CA GTGTT TGAGGACGTCCCGTC CAATGATGCCTCTCC TERM 3663 3314328 - 3314296 - f 100 -18.5 -5.93809 | overlap 3314320 CCCGGACAAAAAAAA GGCGGGACGTCCC ATTGAGA GAGACGTCCCGCC CGATTAAAGCCTTTC TERM 3664 3314827 - 3314862 + G 76 -8.3 -4.28361 | gap 2 ATACCCCGCTGCTCC CCTCGCGCACCCTGTCG CGGC TGACCGGG-GC-CGAGG TTTTCATCAAATTCG TERM 3665 3314942 - 3314909 - g 77 -16.7 -2.70932 | overlap 3314885 3314882 CGCCTCGTTCAAGGA GCGCGGCGCGCTCAA CCGG TTGAGCGCGCTGAGC GAGACCGAGCGGGCG TERM 3666 3315580 - 3315600 + G 77 -15.4 -3.01712 | opp_overlap 3315563 TGGCCGAGGGGGCGG GGGCGGCG TCGCT CGCCGCCC TGTTGACCGAGCCCC Rru_A2877 3314712 - 3315980 + | threonine dehydratase TERM 3667 3316032 - 3315981 - f 85 -16.4 -3.14132 | gap 1 GCCGCCGGCGATTAA GCCTCTCG-CCGATGGCCGGGGGGC GCG GCCCTCCGGCCATCGGGCGGCTTGC CGGGAAGAACGCGAA TERM 3668 3316550 - 3316532 - g 72 -11.6 -3.62096 | opp_overlap 3316522 CTTTACGACGCCAAA GCCGCCGG CGA CCGGCCGC TTGCCGAGGTTCTGC Rru_A2878 3316058 - 3316705 + | hypothetical protein TERM 3669 3316747 - 3316761 + T 74 -5.6 -4.56597 | overlap 3316749 TGATCCGGATCACCC GCCGCT TTG AGCGTC TTTTTCCCGGGCGGC Rru_A2879 3317760 - 3316741 - | hypothetical protein TERM 3670 3317080 - 3317032 - G 72 -11.6 -3.53224 | gap 1 GATGGCCGGCGGAAA CACCAGGGCGATCTGC-CACAGG GTGG CCGGCGAGCCGATGGCCCCGGCG AACAGCCAGACGACG TERM 3671 3318364 - 3318377 + G 95 -6.7 -5.28176 | overlap 3318361 GGATGGGCCGTTCTG CTGAC GGCG GTCAG TTTTTTGTCGCTAAG TERM 3672 3318443 - 3318462 + G 75 -2.8 -4.75472 | gap 1, overlap 3318445 3318447 ATAAGGTGCCCTATC CGGTGGTCG CCC TGACC-TCG TTTTGTTCCTATGCG TERM 3673 3318837 - 3318862 + G 71 -9.7 -3.77831 | overlap 3318826 CGCCGCCACGGCCGT GGATATCGTCG CCTG CGCCGGTATCC TTTGGGTGTTGCTGC TERM 3674 3319971 - 3320001 + G 100 -11.8 -4.40804 | gap 1, overlap 3319968 3319973 CTGGCGTTTCGTGGA GACCGCCCGCGCC TCGGGC GG-GCGGGCGGCC TTTTATCAGGTGGTC TERM 3675 3320132 - 3320169 + G 76 -8.4 -4.28254 | overlap 3320133 AGCGCTATGGCCTGC G-CCAGACCGTCAGCCGC TGCA GCCGC-GACGGGCTGGTC TTTTCCCTGTTAAGC TERM 3676 3320133 - 3320167 + G 77 -12.1 -3.741 | gap 1, overlap 3320132 GCGCTATGGCCTGCG CCAGACCGTCAGCCGC TGCA GCCGC-GACGGGCTGG TCTTTTCCCTGTTAA Rru_A2880 3318121 - 3320748 + | hypothetical protein Rru_A2881 3320745 - 3322115 + | virulence protein TERM 3677 3322208 - 3322150 - T 100 -22 -2.66873 | gap 1, opp_overlap 3322170, overlap 3322170 ATGGTTAGGAAACAG CCTCCAACCCCATGAAAAAAGCCAGCC CAAACC GGCTGGCTTTTTTCATGGGGA-AGTGG TGGGCCCGGCAGGAC TERM 3678 3322189 - 3322170 - T 100 -10.7 -5.16237 | opp_overlap 3322170, overlap 3322150 AACCCCATGAAAAAA GCCAGCC CAAACC GGCTGGC TTTTTTCATGGGGAA TERM 3679 3322170 - 3322189 + T 100 -10.7 -5.14563 | opp_overlap 3322170 3322150 AACCCCATGAAAAAA GCCAGCC CAAACC GGCTGGC TTTTTTCATGGGGAA Rru_A2882 3324432 - 3322342 - | RNA polymerase sigma factor RpoD TERM 3680 3322516 - 3322498 - G 74 -12.4 -3.60296 | opp_overlap 3322512 CATGCCGATGCCAAA GCGCATGC GCA GCACGCGC TCCTCGCGTGGTGTC TERM 3681 3324584 - 3324561 - R 85 -3 -5.40072 | overlap 3324562 3324563 3324565 CCGTTCCCAAAAAAA TCCACGGACC CTCA AGTCCGCGAC CTCCAAGGGAAAACT TERM 3682 3324673 - 3324702 + r 76 -9.1 -4.0044 | overlap 3324674 TCATCCCTCGGGGAC CGGGCCATCGAGC ACCG GCTCGTCGGCCCA TTTGTCCTGCTGCTT TERM 3683 3324674 - 3324701 + r 72 -12.6 -2.99541 | overlap 3324673 CATCCCTCGGGGACC GGGCCATCGAGC ACCG GCTCGTCGGCCC ATTTGTCCTGCTGCT Rru_A2883 3326520 - 3324658 - | DNA primase Rru_A2884 3327173 - 3326715 - | hypothetical protein TERM 3684 3327353 - 3327378 + H 86 -14 -3.53012 | gap 1, opp_overlap 3327329, overlap 3327337 3327353 CCGCACGCCGGTCGC G-GCGGGCGGC TTCGT GCCGCCCGCAC TTTCAAGACCCGGGC TERM 3685 3327353 - 3327377 + H 73 -14.2 -2.71712 | opp_overlap 3327329, overlap 3327337 3327353 CCGCACGCCGGTCGC GGCGGGCGGC TTCGT GCCGCCCGCA CTTTCAAGACCCGGG TERM 3686 3327928 - 3327938 + G 72 -8.2 -4.11216 | overlap 3327926 GGTGATCGCCCATGC CGCC GAC GGCG TTTTCGACATCCCCG TERM 3687 3328394 - 3328378 - g 73 -12.3 -3.37796 | GGCGACGACCTATAA GATGGCC ACC GGCCATC GCGGGGCCAACCACC Rru_A2885 3327494 - 3328663 + | carbamoyl-phosphate synthase small subunit carB 3328748 - 3331996 + | carbamoyl phosphate synthase large subunit Rru_A2887 3332082 - 3332555 + | GreA/GreB family elongation factor TERM 3688 3332586 - 3332604 + F 100 -13.8 -5.27335 | CCCTTCCCGCTCTCA CCCCCGCT TCC GGCGGGGG TTTTTCTTTGCCCGC Rru_A2888 3332775 - 3333467 + | hypothetical protein TERM 3689 3333656 - 3333676 + G 71 -13.9 -2.90219 | overlap 3333674 GAAATATTGGTTCAT GCGGGGTCC GCC GGCCCCCGC TATCTCAGCGTTATC Rru_A2889 3333467 - 3333988 + | hypothetical protein Rru_A2890 3334110 - 3334556 + | hypothetical protein Rru_A2891 3334553 - 3335254 + | hypothetical protein Rru_A2892 3336139 - 3335282 - | ABC-3 transporter component TERM 3690 3335506 - 3335495 - G 87 -7.2 -5.06414 | CCGGGTGAACAAAAA GGCG ATGG CGCC CGGCCCGATCAGCAA Rru_A2893 3336996 - 3336136 - | ABC-3 transporter component TERM 3691 3336259 - 3336211 - G 79 -2.9 -5.06414 | overlap 3336213 3336223 GGGGGCGAACAAAAA GGCGAGCAGGAAGACCAGGGTCT GCA AAACCACGATCACCCCGCCGGTC GCCCCATCCAGGAAG TERM 3692 3336921 - 3336910 - G 86 -7.2 -4.94902 | GAAGCACGACAAAAA GGCG CAGA CGCC GCCGACCAGGGCGCT Rru_A2894 3337895 - 3336993 - | ABC transporter component TERM 3693 3337407 - 3337425 + g 82 -4.5 -4.96848 | opp_overlap 3337382 GTCCTGGGCTAGGGC GCGGG CCAGGAACA CCCGC TTTTTCTGTCCGCCC Rru_A2895 3338875 - 3337943 - | twin-arginine translocation pathway signal Rru_A2896 3339468 - 3338974 - | AsnC family transcriptional regulator TERM 3694 3339651 - 3339669 + H 78 -4.4 -4.82901 | overlap 3339632 CCCCTGTGGGCGGGG GTGGCTCG TAT CGGGGCGC TTTTTATGGAGCCCC Rru_A2897 3339713 - 3340327 + | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3695 3340363 - 3340386 + F 100 -12.4 -4.54727 | CCTTCCGCCCCGGGC GCGGTACCCG GGCG CGGTTACCGC TTTTGCTTTACCCCG Rru_A2898 3340463 - 3341407 + | thioredoxin reductase TERM 3696 3341425 - 3341456 + F 88 -13.8 -3.62096 | gap 1, opp_overlap 3341411 3341414 3341413, overlap 3341433 AGACCGGCAAGCCGA CCG-CGAAGGGGCGT TCC ACGCCCTTTTGGCGG TTTGGCCTGCTGACA TERM 3697 3341433 - 3341447 + F 89 -11.4 -4.17089 | opp_overlap 3341414 3341413, overlap 3341425 AAGCCGACCGCGAAG GGGCGT TCC ACGCCC TTTTGGCGGTTTGGC TERM 3698 3342398 - 3342413 + G 89 -10.4 -4.46212 | GCCACAGCAAGCGGG TCGCGG TCTT CCGCGA TTTTCTGATCAAGGA Rru_A2899 3341485 - 3342453 + | LysR family transcriptional regulator TERM 3699 3342679 - 3342705 + T 85 -9.2 -4.7173 | overlap 3342681 3342688 TGCCGCCATTTTGCC GGGGCGACCCGG CAC CCAGGGCGCCGC TTTTTCGGTGTCCTA TERM 3700 3342758 - 3342778 + T 100 -14 -4.85782 | CCTGTTCCGACTTTA CCCCCGGA CTTGC TCCGGGGG TTTCTTTTTGGCCAG Rru_A2900 3343732 - 3342806 - | hypothetical protein TERM 3701 3343022 - 3343010 - G 84 -9.1 -4.48987 | GTTCCAGAAGTAAAA GGCGA AGA TCGCC GGGAAAATCGCCGTA Rru_A2901 3344052 - 3344492 + | histidine triad (HIT) protein Rru_A2902 3344489 - 3345139 + | hypothetical protein TERM 3702 3345913 - 3345928 + G 79 -3.2 -5.00616 | gap 1, overlap 3345908 GGAAGCCGGCGCCCA GGCC-CG CCT TGAGGCC TTTTTTAACGGACCG TERM 3703 3346048 - 3346087 + G 81 -7.7 -4.58283 | gap 1 CCGTCAGGTGTGGAC GGCGGCC-CGCCATCACC CCCCC GGTGGCGGCATGGACGCC TTTTTGCGCGAATTG TERM 3704 3346447 - 3346465 + G 75 -11.6 -3.65201 | opp_overlap 3346417 ATGGGTGGCGGGCTG CGGCGCCG ATG CCGCGCCG TTCTTCCGCATCTTC Rru_A2903 3345275 - 3346711 + | deoxyribodipyrimidine photo-lyase type I Rru_A2904 3348701 - 3348294 - | transposase TERM 3705 3348740 - 3348751 + r 74 -3.6 -4.81212 | GGTCATCGTGGTCAC CCTC GGTT GGGG TTTTGTTGTGGTGAC TERM 3706 3349218 - 3349181 - R 75 -8.5 -4.26881 | gap 1, overlap 3349182 TTGCATAAAACCAAA CGGGGCGAACCCTTCTTG TTT CAAGAAAGAT-CGCCCAA AAGCAACTTAAGATT Rru_A2905 3350306 - 3349329 - | hypothetical protein TERM 3707 3350797 - 3350750 - g 77 -10.7 -3.86897 | gap 3, opp_overlap 3350762, overlap 3350721 3350752 3350762 GTCACCCTCGACAAA CA-CGACGACAAAGCGCTCGACCG CTT CGG-CGA-CGCCCTGTCGGCGATG CCGGAAGTGCTGGAA TERM 3708 3350794 - 3350752 - g 77 -13.5 -3.5241 | gap 2, opp_overlap 3350762, overlap 3350721 3350750 3350762 CACCCTCGACAAACA CGACGACAAAGCGCTCGACCG CTT CGG-CGA-CGCCCTGTCGGCG ATGCCGGAAGTGCTG Rru_A2906 3350495 - 3351001 + | AsnC family transcriptional regulator TERM 3709 3351041 - 3351008 - f 71 -5.9 -4.42062 | gap 1, opp_overlap 3351037 TACCCTTGAAAGAAA GCCGGCCG-TTGTTGC GGC GCAAGGATCGGCCTGC CATCGCAGGTTTATC TERM 3710 3351037 - 3351050 + F 71 -8.1 -4.05446 | opp_overlap 3351008 CGGCGCAAGGATCGG CCTGC CATC GCAGG TTTATCGTTGCGAAA TERM 3711 3351173 - 3351143 - f 71 -6.1 -4.41616 | gap 1, overlap 3351144 3351145 ATTTTCCCAAAGAAA GGGTGGAGA-GGCG CGGT CGCCCTCTCCACAT GATCCGAGGGACGAT TERM 3712 3351352 - 3351402 + F 95 -16.1 -3.95584 | GGGGGATGCGTCTAT GGTGAGGCCGCGCCCGCT-TGACGA CCC TCGTCCCGGCGGGCCCGGCC-CTCC TTTCATTGATGACCG Rru_A2907 3351545 - 3351880 + | anti-sigma-factor antagonist domain-containing protein TERM 3713 3351930 - 3351910 - g 79 -6.7 -4.66938 | overlap 3351911 3351912 AGCCCCAAGACAAAA CCCGGCCTG TCC CAGGCCCTG CTCAAGGCCGTGGAA Rru_A2908 3351889 - 3352716 + | hypothetical protein Rru_A2909 3352722 - 3353555 + | ABC transporter component Rru_A2910 3353608 - 3354561 + | hypothetical protein TERM 3714 3354961 - 3354996 + G 81 -16.1 -3.09492 | TGGTCACCCCGGAAT TGCGGGCGCGGACCG ATCTGA CGATCCGCGGCCGCA TCTTGCGCTTCGAGC Rru_A2911 3354609 - 3355220 + | ABC-type uncharacterized transport system auxiliary component-like Rru_A2912 3355303 - 3356112 + | peptidase Rru_A2913 3356164 - 3356847 + | two component transcriptional regulator Rru_A2914 3356837 - 3358438 + | periplasmic sensor Signal transduction histidine kinase Rru_A2915 3358531 - 3358908 + | hypothetical protein TERM 3715 3359011 - 3359033 + G 74 -12.6 -3.57144 | TCTTGCTTGACGCGG GCGAGCGGGC GAG GCTCGCGCGC TTTCACCATGCCCAC TERM 3716 3359081 - 3359132 + G 79 -11.4 -3.85698 | gap 1 CGCCGCCCATGGCCT GTGCCGGGTGATGCTGTCGCGGGCC GCC GGCCTGCCACCGCG-CGACTGGCGC TTTGTCGCCACGGCC TERM 3717 3359171 - 3359192 + G 100 -17.3 -4.41047 | overlap 3359147 GCCGATGGTCGACCC GGCCAGCGG TCCG CCGCTGGCC TTTTCCTTGAGCCAT TERM 3718 3359337 - 3359357 + G 79 -6.7 -4.65895 | overlap 3359338 GACCGCGCGCCCGAT TCGTTGGGC TTG GCCCGGCGC TTTTTCCATCCCCAC Rru_A2916 3358998 - 3359723 + | 4'-phosphopantetheinyl transferase Rru_A2917 3359979 - 3359725 - | hypothetical protein TERM 3719 3360142 - 3360164 + H 78 -2.6 -5.04987 | overlap 3360144 3360144 GCATATGAGTGGGGT CAGCGGTAAC TGC GTTATGGCGG TTTTTTCCAACTCTT Rru_A2918 3360246 - 3360761 + | hypothetical protein Rru_A2919 3361457 - 3360918 - | hypothetical protein TERM 3720 3361311 - 3361275 - G 100 -16.6 -4.54047 | gap 1, overlap 3361278 CCACCCGACATAAAA CAACGGCCCGG-CTCCC TGGG GGGAGACCGGGCCGCTC GGGGCACGTTGGGAA TERM 3721 3361308 - 3361278 - G 100 -20.5 -4.38141 | gap 1, overlap 3361275 CCCGACATAAAACAA CGGCCCGG-CTCCC TGGG GGGAGACCGGGCCG CTCGGGGCACGTTGG Rru_A2920 3363551 - 3361461 - | hypothetical protein TERM 3722 3361728 - 3361686 - G 75 -13.3 -3.40403 | gap 1, overlap 3361672 3361727 GGCGGCGCACCAGAA GGCGGCCCGGC-GGTCGCGC ATCA GGGCGCCCTGCCAAGCCACC ACCGGGGTGCCCAGG TERM 3723 3362517 - 3362540 + g 74 -12.4 -3.59262 | gap 1 AGCCAGCACGCCGAT GCGCCGTCGCC CCC GGTG-CGGCGC TTTGCCGATATGGCG TERM 3724 3363143 - 3363184 + g 90 -17.9 -3.53012 | CGGGTTGCTGGCGCA GCAGGCTGGCCGCGCCCGG CCCG TCGCCGGCGGCCAGCCTGC TTTCGGCCAGGGCCA Rru_A2921 3364717 - 3363548 - | TPR repeat-containing protein TERM 3725 3363831 - 3363818 - G 74 -5.2 -4.56597 | overlap 3363820 CGCCGTTCCCAAAAA GGCG TCGCGG CGCC AATCGGCGTCGGGCT TERM 3726 3364557 - 3364531 - G 70 -10.2 -3.68738 | gap 1, opp_overlap 3364534 GGTCGAATAAATCAA TG-GCCTGGGC CGGCTC GCCCAGGCGCA GGGCGATGGCGCCCA Rru_A2922 3365075 - 3364761 - | hypothetical protein TERM 3727 3365382 - 3365399 + G 73 -12.7 -3.35679 | GCTTTGGCCCGCCAG GGGCACC GGCC GGTGCCC TTATCGCTGGCCCAG TERM 3728 3365568 - 3365606 + G 100 -11.5 -4.62069 | overlap 3365570 AGCTTCAGCAGCTTC GCCGACCGCGTCCACGG ATCGC CCGAGGTCGGGGTCGCC TTTTTCGAATCCGCC TERM 3729 3366409 - 3366383 - g 80 -9.2 -4.26076 | opp_overlap 3366382 CGACCGCGACGAAAA CCGCCGCCGGGG AAG CGCCGGCGCCCG CTTCATGGCCGGCTG Rru_A2923 3365295 - 3366488 + | hypothetical protein Rru_A2924 3367281 - 3366493 - | glycosyl transferase family protein TERM 3730 3366655 - 3366641 - G 76 -8.5 -4.25104 | CGCTGGCCATCAAAA GCGCC GCCGG GGCGC AGGGTATGGCGCACG TERM 3731 3366750 - 3366727 - G 70 -2.4 -4.66987 | gap 1, overlap 3366729 CAGATCGCAATAAAA CACGTCCT-CG CAG CGCAGAACGCA CAGCTCGGGATCCTC TERM 3732 3366963 - 3366952 - G 77 -7.2 -4.56775 | ATGGGGCGGCAAAAA GCCG TCAT CGGC ATCAAGGTAAAACAA TERM 3733 3367337 - 3367313 - R 76 -5.6 -4.66833 | gap 1, opp_overlap 3367313 3367311, overlap 3367316 3367317 CGGCAAGCGGAAAAA GGAGCGC-CGG CGTT CCGCGCGTCCC TGTATTTGGACCAAA Rru_A2925 3368732 - 3367455 - | major facilitator transporter TERM 3734 3368024 - 3368007 - G 81 -5.5 -4.77036 | gap 1, overlap 3368009 GGCGAGCAGCAAAAA CAGGTGCC TCA GGC-CCCG CGACCGCCGTACCAG Rru_A2926 3370147 - 3368729 - | RND efflux system, outer membrane lipoprotein, NodT TERM 3735 3369026 - 3369041 + g 75 -6.8 -4.30576 | opp_overlap 3369006 3369026 GGCGACTTCGCGAAA GGCGGT CTGG ATCGCC TTTTCGTAGTGGGCG Rru_A2927 3373347 - 3370318 - | acriflavin resistance protein TERM 3736 3371593 - 3371607 + g 81 -4.2 -5.04385 | opp_overlap 3371593 GCTGGTCAGCACATA CATCAC CTC GGGATG TTTTTTCAGGATGTC TERM 3737 3371958 - 3371935 - G 81 -11 -4.05193 | gap 1 CATCAAAGAGAAGAA GGCGGCGACCG ACA CGGTCAC-GCC GAATTGAATGAAGAA TERM 3738 3372051 - 3371999 - G 73 -11.2 -3.72576 | gap 1 GCGCCGCCCATGAAA CTGACGGGCATGAAGACGGCG-CAG ATCA CCGCCGTCGTCGCCACGACCGCCAG ACCGATCTCGTCGGC Rru_A2928 3374393 - 3373350 - | secretion protein HlyD TERM 3739 3373498 - 3373469 - G 75 -14.3 -3.28924 | gap 1, opp_overlap 3373485 CATCGCGTTCGAGAA GCGGCGTCAC-CGC CAA GCGGGCGACACCGC CGTCCCCTTTCACCG Rru_A2929 3374529 - 3375281 + | two component transcriptional regulator Rru_A2930 3375287 - 3376345 + | periplasmic sensor Signal transduction histidine kinase Rru_A2931 3377741 - 3376464 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 3740 3377205 - 3377217 + g 70 -6.2 -4.18018 | CTCGGCCAGGGTCGC CGCC ATCAG GGCG TTTTCGGTGCCGCCG TERM 3741 3377947 - 3377986 + r 71 -7.8 -4.07568 | gap 1 CTAATCCGCGGACGG CTTGGCGCGGGCGCGGG CCTGATC CTTGCGCCGGCGC-AGG TTTTCGCGCAAGGCG Rru_A2932 3378114 - 3377932 - | hypothetical protein TERM 3742 3378338 - 3378351 + H 84 -3.7 -5.27335 | overlap 3378335 GGCACCAGTTTCCCG GTCCG CTAT CGGCC TTTTTCTTTGGAAAA TERM 3743 3378612 - 3378623 + H 84 -5.8 -4.89477 | opp_overlap 3378598, overlap 3378598 ACGCTCCCTTCACGG GACC GTTT GGTC TTTTCTTCTTGACAA TERM 3744 3378654 - 3378642 - H 74 -3.3 -4.82901 | TCTTCTTGACAAAAA TCCCG AGT CGCGA AAAACCCGCCCTTGC TERM 3745 3378675 - 3378659 - H 73 -5 -4.58395 | opp_overlap 3378669, overlap 3378660 3378661 CCGAGTCGCGAAAAA CCCGCC CTTGC GGCGCG AGTCAGGCCGTTCTC Rru_A2933 3378807 - 3379370 + | hypothetical protein TERM 3746 3379445 - 3379471 + T 100 -21.6 -4.91109 | TTTCTCCGTTTTTAG CCCCTCGCGCGA ACT TCGCGCGGGGGG TTTTTATCATCGGGC TERM 3747 3379549 - 3379535 - T 100 -6.4 -5.60993 | opp_overlap 3379535 CCCCCGATAAAAAAA TGCGAT AAG ACCGCA TTTCTTGCTTGCGCC TERM 3748 3379714 - 3379697 - T 73 -14.1 -2.80699 | opp_overlap 3379697, overlap 3379692 TCCGAAGGAAGATCA GGCCCCC TCAC GGGGGCC TTTCTTTTGCGCGTT TERM 3749 3379697 - 3379714 + T 100 -14.1 -4.66535 | opp_overlap 3379697 3379692 TCCGAAGGAAGATCA GGCCCCC TCAC GGGGGCC TTTCTTTTGCGCGTT Rru_A2934 3380517 - 3379759 - | diguanylate phosphodiesterase TERM 3750 3380599 - 3380575 - R 87 -9.9 -4.36914 | overlap 3380576 GGGGCTCTGACAAAA GCGGGGCGC GACTCAG GCGCCCCGG CGCTGGGGCGGAATC TERM 3751 3380598 - 3380576 - R 78 -13.4 -3.21934 | overlap 3380575 GGGCTCTGACAAAAG CGGGGCGC GACTCAG GCGCCCCG GCGCTGGGGCGGAAT Rru_A2935 3383040 - 3380587 - | PAS/PAC sensor hybrid histidine kinase TERM 3752 3382421 - 3382411 - G 70 -8.2 -3.91897 | overlap 3382412 GGCGGTATTGATAAA GCCG ATA CGGC CATCGGGCTCGATGC Rru_A2936 3384467 - 3383106 - | dihydroorotase TERM 3753 3383198 - 3383155 - G 100 -21 -4.26903 | gap 1 GGCAGGGGATGAAAA CGCACCGGCGCCCC-CAAGGG ACG CCCCTGAAGGGCGCCGTCGCG CATGACGATGGCCCC TERM 3754 3383493 - 3383503 + g 72 -8.2 -4.13767 | opp_overlap 3383459 3383474 3383455, overlap 3383481 CTGCACTCCGGGCAT GCCC GAG GGGC TTTTGGGATAGGGAA Rru_A2937 3386330 - 3384570 - | asparagine synthase, glutamine-hydrolyzing TERM 3755 3385755 - 3385718 - G 72 -14.1 -3.01712 | gap 1, overlap 3385739 GGGCGTCTTCGAAGA CCAGGGTTTCC-CCGGGC AAA ACCCGGCGGATCCCCTGG AAGATCGTCCGCGCC Rru_A2938 3387407 - 3386352 - | glycosyl transferase, group 1 TERM 3756 3387470 - 3387444 - R 100 -9.3 -4.78029 | overlap 3387447 GGAAGAAAAGGAAAA TCAGGCGACCC GGCAG GGGGCGCCGGA GGAGAAAACTCAGGC Rru_A2939 3388535 - 3387480 - | hypothetical protein TERM 3757 3388088 - 3388069 - G 74 -12.8 -3.53091 | ATCCGCGGCCGGAAA GCGCCCGA AACG CCGGGCGC GATCACCGTCGAATG TERM 3758 3389276 - 3389234 - g 75 -11.8 -3.72576 | overlap 3389235 CCCTCGGCGAGGAAA GCCTGTGGCAGGCCCATCGC TTA GCCCTGGGCCTGCCCGAGGG CAGCGACGACCTTGA TERM 3759 3389275 - 3389235 - g 76 -15.3 -2.83403 | overlap 3389234 CCTCGGCGAGGAAAG CCTGTGGCAGGCCCATCGC TTA GCCCTGGGCCTGCCCGAGG GCAGCGACGACCTTG Rru_A2940 3388714 - 3389652 + | glycine cleavage T protein (aminomethyl transferase) Rru_A2941 3389829 - 3390122 + | putative DNA-binding protein Rru_A2942 3392080 - 3390263 - | ABC transporter, transmembrane region TERM 3760 3390357 - 3390336 - G 72 -8.7 -4.03413 | AGGTCGGCATACAAA CCGCCCT CGGCCAGC AGGGCGG CGTGGGAGCCCGATT TERM 3761 3391334 - 3391297 - G 73 -11.3 -3.69323 | gap 1 CGACCACCATCGAAA TCGCCGCGCCGATGCGTT CCG AGCGCATCAG-GTGGCGA TAGATGCGATCGACC Rru_A2943 3393270 - 3392080 - | permease YjgP/YjgQ TERM 3762 3393312 - 3393302 - R 75 -2.4 -4.87133 | AGGGCCCAAACAAAA GTCC CGG GGCC ATCATCCCGGCGCGT Rru_A2944 3394317 - 3393358 - | ArgK protein Rru_A2945 3394854 - 3394360 - | hypothetical protein mutL 3396828 - 3394939 - | DNA mismatch repair protein TERM 3763 3396696 - 3396730 + g 73 -12.9 -3.30159 | overlap 3396687 3396697 CGCCGTCGGTCATGG TGATATCGATGCGGG AGGCC CCCGCATCGATGGCG TTCTCGACCAGTTCC Rru_A2947 3398506 - 3396863 - | glucose-6-phosphate isomerase Rru_A2948 3399217 - 3398648 - | hypothetical protein TERM 3764 3398686 - 3398674 - G 73 -6.2 -4.38141 | overlap 3398656 3398676 CCCGATAGAAAAGAA CCCG TCCGG CGGG GGCGATCTGCGCCAT TERM 3765 3398726 - 3398743 + g 74 -5.6 -4.57073 | overlap 3398723 GTCTTGCAGGTTCCG GGTCAA CACGGT TTGACC TTTTTCCAGGGCGTG TERM 3766 3399142 - 3399162 + g 71 -9.6 -3.80733 | ACGGCAGATCGGCAT CGGCGCGG CGGGT CGGCGCCG TTGTTATCCGGTCGG Rru_A2949 3399494 - 3399207 - | hypothetical protein TERM 3767 3399755 - 3399717 - R 84 -11.9 -4.0896 | gap 1, opp_overlap 3399722, overlap 3399722 AAATTCCGGGCAAAA GAAAACCCCAGATAAGCC GTTA GGCC-ATCTGGGGTTTTT TTGGTCGGAGTGAGA TERM 3768 3399750 - 3399722 - R 100 -11.8 -5.07652 | gap 1, opp_overlap 3399722, overlap 3399717 CCGGGCAAAAGAAAA CCCCAGATAAGCC GTTA GGCC-ATCTGGGG TTTTTTTGGTCGGAG TERM 3769 3399722 - 3399750 + r 100 -9.6 -5.52384 | gap 1, opp_overlap 3399722 3399717 CCGGGCAAAAGAAAA CCCCAGATAAGCC GTTA GGCC-ATCTGGGG TTTTTTTGGTCGGAG TERM 3770 3399957 - 3399915 - R 78 -10.7 -3.91897 | gap 2, overlap 3399923 CGTTCGATGCAGAAA TCGACAAT-G-CCGGCCAAAG CCG CCTTGGCCGGGCCATCGGCGA AGATGTCCAGGGCCG Rru_A2950 3400972 - 3399890 - | farnesyltranstransferase Rru_A2951 3401119 - 3401331 + | hypothetical protein TERM 3771 3401821 - 3401837 + G 73 -3.5 -4.59773 | overlap 3401813 3401822 GCTGTCTGGCCCTTC TCCGCCC CAA GGGCCGC TTTTTCGCCGTCCAC TERM 3772 3401997 - 3401976 - g 77 -12.9 -3.53012 | GTCGCCGCCCGCAAA GGCGTGCGC GGCG GCGCCCGCC TGCTGCCCGGCCTCG Rru_A2952 3401328 - 3402110 + | methyltransferase small TERM 3773 3402360 - 3402325 - g 77 -13.8 -3.35679 | CGGCGCGACGCACAA CGCGGGCCCGCGCCTC CGGC GCCACGCGCGCCCGCG CTTCCGGCGAGACGG TERM 3774 3402403 - 3402418 + G 81 -11.8 -3.90112 | TCGATCTGGTGCGCT GCCCCG ACTG CGGGGC TTTCGTTCCCCAGGG Rru_A2953 3402180 - 3402467 + | hypothetical protein glyQ 3402562 - 3403449 + | glycyl-tRNA synthetase subunit alpha TERM 3775 3405443 - 3405497 + G 93 -10 -4.66609 | gap 3, overlap 3405443 CTCCCTCGCCGCCGA GG-ATC-ACGCGGCCGC-CATGCGGGC TCTC GCCCGCCTGCGCGGTCCCGTCGACGCC TTTTTCGATCGGGTG Rru_A2955 3403455 - 3405620 + | glycine--tRNA ligase TERM 3776 3407174 - 3407127 - g 72 -14.2 -3.01712 | gap 1, opp_overlap 3407137 CCGTTGGCGGCAAGA CCGTGCGCGAGGGCGACATCA TCACCCT TGATGGCGCCGCCG-GCACGG TGATGCTGGGCGCGG Rru_A2956 3405623 - 3408307 + | pyruvate phosphate dikinase Rru_A2957 3408512 - 3408285 - | hypothetical protein TERM 3777 3408361 - 3408385 + g 77 -13.6 -3.58343 | gap 1 TCACCAGCGTCCTGA CGCC-CGCCTC TGTC GAGGCGCGGCG TTTGGGCGTGGTGGC TERM 3778 3409582 - 3409592 + G 87 -6.8 -5.07053 | overlap 3409589 GACCATCCTGCCGAC GCTG GAA CAGC TTTTTTCGGCTGATT Rru_A2959 3409475 - 3410995 + | major facilitator transporter TERM 3779 3411043 - 3411077 + F 100 -12.7 -4.31835 | opp_overlap 3411031 3411032 AAAGGGGCACCTTAT GCGGCCCCCTGGCGA GAGGA TCGCGCGGGGGCGGC TTTCTTATCCCGGTT TERM 3780 3411358 - 3411382 + G 77 -13.6 -3.58343 | gap 1 TCACCAGCGTCCTGA CGCC-CGCCTC TTTT GAGGCGCGGCG TTTGGGCGTGGTGGC Rru_A2961 3411327 - 3412124 + | hypothetical protein Rru_A2962 3412212 - 3413195 + | zinc-containing alcohol dehydrogenase superfamily protein Rru_A2963 3413746 - 3413261 - | hypothetical protein TERM 3781 3413888 - 3413860 - H 73 -10.3 -3.57144 | overlap 3413881 GGTTTTACGGGGAAA GCCGCGCCT GAAACCACCAT AGGCGCGGC CCCCATCAAACATCG TERM 3782 3414503 - 3414457 - g 71 -3 -4.64861 | overlap 3414458 GTTCCCGAAAAGAAA TTCGTCACCTT-CCGCACCACC TGCAC GGTGGC-CGGCAAGGTGGTGAT CGAGGGCGAGGCGAC Rru_A2964 3414109 - 3414543 + | MaoC-like dehydratase TERM 3783 3414566 - 3414595 + F 89 -17.9 -3.04248 | overlap 3414561 3414564 3414562 3414590 GCCGACTTTTCGCGC CCCGGCGGGTC CTTGTCGC GACCCGCCGGG TCTTCCCCGCTGTTG Rru_A2965 3414677 - 3415630 + | FMN adenylyltransferase / riboflavin kinase TERM 3784 3415891 - 3415874 - g 70 -10.5 -3.66908 | CTGGCCGAAAAGGAA CCGGGCA TTCT CGCCCGG TGGGAGAAGCTGGAC ileS 3415796 - 3418618 + | isoleucyl-tRNA synthetase Rru_A2967 3418623 - 3419105 + | signal peptidase II TERM 3785 3419542 - 3419522 - g 81 -14.7 -3.60792 | TGGTCAACCGCGAAA CCTCGGCGC TCA GCGCCGAAG AACGCACCTTCACCG Rru_A2968 3419170 - 3419727 + | hypothetical protein TERM 3786 3419832 - 3419801 - g 74 -12.2 -3.57263 | gap 1, overlap 3419802 ACCCCTATCGCCAAA CCCTCGACACCCGCG TCA CCCGGGTGGCG-GGG CCCGAGGTCATGGTC TERM 3787 3420198 - 3420234 + G 75 -9.3 -4.07568 | opp_overlap 3420194 GCTCGAATCGAGCGG GGCGGTGATCGCCCGCG ACC TGCCGATCATCACCGCC TTTTCCGACGAGGCC Rru_A2969 3419761 - 3420405 + | alanyl-tRNA synthetase related protein Rru_A2970 3420434 - 3421207 + | precorrin 6A synthase Rru_A2971 3422436 - 3421204 - | Bcr/CflA subfamily drug resistance transporter TERM 3788 3421473 - 3421462 - G 72 -5.8 -4.32402 | overlap 3421463 GCCGAAGCAAAAGAA CTGG ATGC CCAG GGCCGCCATGAACAG TERM 3789 3422544 - 3422582 + H 72 -11.4 -3.31792 | overlap 3422545 AAAGAGCCGGGGAAT GGGGGGGGGCGGCCGGCG GAT CGCCGGCAGGCGGCCCCA TTGTGGCCGTGATCG TERM 3790 3422545 - 3422581 + H 76 -14.9 -2.58861 | overlap 3422544 AAGAGCCGGGGAATG GGGGGGGGCGGCCGGCG GAT CGCCGGCAGGCGGCCCC ATTGTGGCCGTGATC Rru_A2972 3422648 - 3424027 + | peptidase M16-like Rru_A2973 3424033 - 3425376 + | peptidase M16-like TERM 3791 3425515 - 3425553 + T 93 -16.2 -3.53012 | opp_overlap 3425521, overlap 3425521 TCCTCCAGCCCTTGA TCAAAACGCGCCAGAG ACGATTC CTCTGGCGCGTTTTTA TTTGGAAACAAGGCC TERM 3792 3425521 - 3425547 + T 100 -15.2 -5.27335 | opp_overlap 3425521, overlap 3425515 AGCCCTTGATCAAAA CGCGCCAGAG ACGATTC CTCTGGCGCG TTTTTATTTGGAAAC TERM 3793 3425547 - 3425521 - T 100 -15.9 -4.25283 | opp_overlap 3425521 3425515 AGCCCTTGATCAAAA CGCGCCAGAGA CGATT CCTCTGGCGCG TTTTTATTTGGAAAC TERM 3794 3425902 - 3425851 - T 76 -12.6 -3.35996 | gap 3, overlap 3425852 3425854 GACCGCTACCCAGAA CGATCTTT--GGCCGGGGC-TCCTT TGCCC AAGGATGCCCCGGCCGTAAAGATCC CCGCGTAGCAAGCCC TERM 3795 3425901 - 3425852 - T 78 -16.1 -2.61383 | gap 3, overlap 3425851 3425854 ACCGCTACCCAGAAC GATCTTT--GGCCGGGGC-TCCTT TGCCC AAGGATGCCCCGGCCGTAAAGATC CCCGCGTAGCAAGCC TERM 3796 3425899 - 3425854 - T 70 -12.9 -2.8474 | gap 3, overlap 3425852 3425851 CGCTACCCAGAACGA TCTTT--GGCCGGGGC-TCCTT TGCCC AAGGATGCCCCGGCCGTAAAGA TCCCCGCGTAGCAAG TERM 3797 3425996 - 3425952 - T 95 -15 -4.11484 | opp_overlap 3425952 3425949, overlap 3425956 CGCAAGCCGCCAAAA GCAACAGGGCGAGAACGGTC TGTTC GACCATTCCCGCCCCGTAGG TCCTGTTCCGCCGCG TERM 3798 3425992 - 3425956 - T 100 -18.8 -3.67175 | opp_overlap 3425952 3425949, overlap 3425952 AGCCGCCAAAAGCAA CAGGGCGAGAACGGTC TGTTC GACCATTCCCGCCCCG TAGGTCCTGTTCCGC Rru_A2974 3426972 - 3426052 - | photosynthetic reaction centre M subunit Rru_A2975 3427815 - 3426985 - | photosynthetic reaction centre protein L subunit TERM 3799 3427646 - 3427634 - G 75 -4.8 -4.58395 | CTGATCTGCCAAAAA GTCC ACGAG GGAC CAAGAGCGGCCCCCC TERM 3800 3427739 - 3427729 - G 72 -4.6 -4.55118 | overlap 3427717 GAAGCCCACATAAAA GGGC CCC ACCC AGAAGTCGAACAGAT Rru_A2976 3428120 - 3427932 - | antenna complex, alpha/beta subunit Rru_A2977 3428342 - 3428133 - | antenna complex, alpha/beta subunit TERM 3801 3428402 - 3428374 - R 77 -8.2 -4.36914 | gap 1, overlap 3428400 TTCTTGCCCAGAAAA CCATTCCACTGCA TCCG CGCAG-GGAACGG CTGCTCTACCGCGGT TERM 3802 3428461 - 3428436 - R 77 -11.9 -3.62522 | gap 1, opp_overlap 3428436 3428435 3428446, overlap 3428400 GAACCGCGGTAAGAA GTCCA-CCCGAC CAG GTCGGGACGGAC CTTGTTATCCGGCGT Rru_A2978 3430001 - 3428559 - | chlorophyllide reductase subunit Z TERM 3803 3429975 - 3429956 - G 72 -7 -4.27886 | overlap 3429969 CCCCAAACACATAAA CGGCGCCC CAAT AGCCGCCG GCGCGGTCGTGGTCG Rru_A2979 3431404 - 3429998 - | chlorophyllide reductase subunit Y Rru_A2980 3432476 - 3431508 - | chlorophyllide reductase iron protein subunit X TERM 3804 3431847 - 3431790 - G 71 -15 -2.52464 | gap 3, opp_overlap 3431790 GTCGGCGGGAATGGA CGCCAGGACCGGCAAG-CCC--GCCTTCG CGG CGAAGGCCTGAGCCTCGCCGGTCCCGTCA TCCTTGTTGATGACC Rru_A2981 3433426 - 3432473 - | 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide TERM 3805 3433482 - 3433457 - R 73 -8.9 -3.9392 | TTCGAGCCGAAACAA CTGCTGTCAGG TTAG CCTGACTGCCG TGAATGTCAATCTTT Rru_A2982 3434686 - 3433496 - | hydroxyneurosporene-O-methyltransferase TERM 3806 3434872 - 3434834 - R 71 -8.1 -4.07568 | gap 2, opp_overlap 3434869, overlap 3434819 CCGGGCTCGGGAAAA CCGGA-C-CTCCGGCGCCA GGG CGGCGTCGGAGCGATCAGG CGGCGTAGCGCGCCA Rru_A2983 3435737 - 3434868 - | farnesyl-diphosphate synthase TERM 3807 3435055 - 3435032 - G 75 -13.8 -3.24747 | overlap 3435028 TTCCCAGATGACCAA CGGCGTTGGG CCGT CCCAGCGCCG CGTCGCGACCCACCG TERM 3808 3436076 - 3436111 + G 75 -9 -4.11394 | gap 2, overlap 3436083 AGATGCGCGAGATCG CCGTCGG--CGGCGCC CGGCTC GACGCCGGGCCGACGG TTTTCACCATGCGCT TERM 3809 3436779 - 3436808 + G 70 -10.7 -3.55563 | gap 1, opp_overlap 3436779 CATCGTTCTCATCAA CGGCGACGCGGC GGCCCTG GCCGCG-CGCTG TTTCGGACCTCAGGT Rru_A2984 3435940 - 3437451 + | CrtD protein Rru_A2985 3437589 - 3438350 + | hydroxyneurosporene synthase Rru_A2986 3438410 - 3439843 + | tricarballylate dehydrogenase TERM 3810 3439869 - 3439905 + G 71 -12.3 -3.32343 | gap 2, overlap 3439883 CCACCCGCGCCGGCG CCCGGC--GCCTCCGCC GCCGA GGCCGAGGCCCGCCGGG TTCTCGCCCTATGCA Rru_A2987 3439827 - 3440996 + | hypothetical protein TERM 3811 3441739 - 3441684 - g 83 -16 -3.53012 | gap 1 CGCCGCCGCCCCAAA CGCCCCCCCCTGCCCACCGCCGCCACC CCG GACGA-GGCGGTGACCTGGGTGGAGCG CTTGCGGGGAGAGGA Rru_A2988 3441006 - 3441761 + | precorrin-6A reductase Rru_A2989 3442547 - 3441771 - | precorrin-6Y C5,15-methyltransferase (decarboxylating) / precorrin-3 methyltransferase TERM 3812 3441990 - 3442041 + g 75 -14.4 -3.28712 | CGGCAGGTAACGGCG CAGGATCTCGAAGGCGCGGCCC AATTGCCA GGGCCGGGCCTTGGAGATCGGG TTGTAGAAGGCCAGC Rru_A2990 3443278 - 3442544 - | precorrin-2 C(20)-methyltransferase Rru_A2991 3443901 - 3443275 - | precorrin-8X methylmutase TERM 3813 3443457 - 3443437 - G 75 -13.9 -3.22491 | opp_overlap 3443430, overlap 3443425 AAAGCCCAGGATCAA GGCCGGGCG CGG CGCCCCGCC ATCAAGCATTTCCAA TERM 3814 3444062 - 3444051 - H 71 -7.2 -4.18018 | overlap 3444052 CGCGGTGATCGAAAA GCCG CAGG CGGC GAAAGCCCGCGTTCC Rru_A2992 3444154 - 3445380 + | precorrin-6Y C5,15-methyltransferase (decarboxylating) Rru_A2993 3446841 - 3445396 - | hypothetical protein TERM 3815 3445959 - 3445947 - G 75 -4.8 -4.58283 | opp_overlap 3445947 CAAGCCTTTCAAAAA GCTC TCTTT GAGC TTTTCCTTCGCGTTT TERM 3816 3445947 - 3445959 + g 72 -4.8 -4.43911 | opp_overlap 3445947 CAAGCCTTTCAAAAA GCTC TCTTT GAGC TTTTCCTTCGCGTTT Rru_A2994 3448145 - 3446838 - | hypothetical protein TERM 3817 3447930 - 3447917 - G 74 -8.1 -4.20868 | TTTCGAAAAGAACAA TCCGC TCTG GCGGA AAACCATGCGCCCCA Rru_A2995 3448555 - 3448142 - | hypothetical protein TERM 3818 3448531 - 3448521 - G 72 -5.4 -4.30576 | TCCGCATCATCAAAA TGTC GCA GACA TGCATCGTGAAAATC cbiD 3449755 - 3448682 - | cobalt-precorrin-6A synthase TERM 3819 3449556 - 3449580 + g 74 -12.7 -3.55444 | GCGTCCTTGATCACC CCAGCCCGGGC CCA GCCGGGGCCGG TTTCCCGCGTCGCCA Rru_A2997 3451943 - 3449832 - | phosphate acetyltransferase TERM 3820 3450789 - 3450811 + g 70 -10.5 -3.64822 | opp_overlap 3450788 3450785 CTCGGGCAAAACGAT GCGCTTGGC CGCCC GCCGGGCGC TTTGGATCAAGCGGT TERM 3821 3451952 - 3451994 + r 74 -12.1 -3.14132 | gap 2, opp_overlap 3451931, overlap 3451956 CGGGCATCAGGGTCC CCCTGTCC-CGGCCG-AAAGC AGG GCTTTACGGCCGGGGGTATGG TTAGTGAACGACCAG TERM 3822 3451956 - 3451989 + r 75 -13.9 -2.93723 | gap 1, opp_overlap 3451931, overlap 3451952 CATCAGGGTCCCCCT GTCCCGGCCG-AAAGC AGG GCTTTACGGCCGGGGG TATGGTTAGTGAACG TERM 3823 3452090 - 3452132 + r 74 -11.5 -3.53012 | gap 2, opp_overlap 3452090 3452095, overlap 3452095 CAGGCTGATAGTCAA GCAAATCGTCGTCGCGATCTG GTT CAGATCGCT-CGG-GATTTGC TTTAGGCGACGCAGG Rru_A2998 3453351 - 3452134 - | acetate kinase TERM 3824 3452259 - 3452235 - G 74 -5.5 -4.56597 | CGGCGGCGGGAAAAA GCCCCTGGCTG ATG CGGCCCGAGAC GCCGCGCACGCAGCG Rru_A2999 3454195 - 3453398 - | radical SAM family protein TERM 3825 3454281 - 3454257 - R 100 -18.6 -3.54424 | TCGCACCGTTCGAAA TCCCGGGCCG ACCGG CGGCCCGGGA AAGGGGATGGATCAC Rru_A3000 3456551 - 3454293 - | formate acetyltransferase TERM 3826 3454758 - 3454800 + g 70 -6 -4.18762 | opp_overlap 3454751 3454782 3454783, overlap 3454799 GGTCAGAACCGATTG GGTCGGCATCGCGTCGCGGT AGA AGCGCGGCTGGGCGCGGACC TTTTCCATGAAGGTT TERM 3827 3456425 - 3456447 + g 84 -5.5 -4.87665 | opp_overlap 3456420 CGGCCAGGAAGGCGC CGTCACCCT GATAG GGGGTCACG TTTTTCTGGATGAAA TERM 3828 3456611 - 3456631 + r 91 -13.9 -3.86524 | TTCCTGGTCGGGGAA GGCGCCACC GGC GGCGGCGCC TTTGTCACAAGGTGT Rru_A3001 3458474 - 3456663 - | carbon starvation protein CstA TERM 3829 3458648 - 3458638 - H 70 -4.6 -4.50988 | CCACATGAAAAACAA GGCG ACT CACC CCCGGCCATGGCTTG TERM 3830 3458787 - 3458768 - H 77 -11.4 -3.64703 | gap 1 CCGGCCGGATCGAAA GGGC-GGCC TAG GGCCAGCCC GGCGCATCGGCGAAC TERM 3831 3458847 - 3458865 + H 85 -2.2 -5.40072 | overlap 3458837 3458840 GTGACCGCGTCCGCC GGAGCGCG TTC CGTGGGCC TTTTTTTACCGGCCC TERM 3832 3459656 - 3459623 - g 83 -14.6 -3.70546 | gap 1, opp_overlap 3459631, overlap 3459617 CCAGGAAAACGACAA GCGCACCAGCACCGG TCTGG CCGG-GCTGTTGCGC GAACGCGGCATCGAG Rru_A3002 3459252 - 3459857 + | nicotinamidase Rru_A3003 3459992 - 3460642 + | GntR family transcriptional regulator Rru_A3004 3461944 - 3460709 - | aminotransferase, class I and II TERM 3833 3460889 - 3460844 - G 79 -3.2 -5.10461 | gap 2 GCCATCGAAGAAAAA GGCGCCGCCG-GGAACGAA-GG CCAC CCGCTCGTCGCGCAGCGACTCC GCCAACAACTCGGCG Rru_A3005 3462241 - 3462564 + | rubredoxin-type Fe(Cys)4 protein TERM 3834 3462585 - 3462618 + T 83 -17.5 -2.62735 | gap 1, opp_overlap 3462590, overlap 3462590 CCCCGACGCGAACGG CGAAAGGGGCGC-CCC TGC GGGAGCGCCCCTTTCC TGGTGTCGGGAGTCT TERM 3835 3462613 - 3462590 - T 100 -17.4 -3.60971 | opp_overlap 3462590 3462585 ACGCGAACGGCGAAA GGGGCGCCCC TGCG GGAGCGCCCC TTTCCTGGTGTCGGG TERM 3836 3462590 - 3462613 + T 95 -16 -3.81951 | gap 1, opp_overlap 3462590, overlap 3462585 ACGCGAACGGCGAAA GGGGCGC-CCC TGC GGGAGCGCCCC TTTCCTGGTGTCGGG Rru_A3006 3464708 - 3462645 - | hypothetical protein TERM 3837 3465331 - 3465354 + G 78 -10.3 -4.14392 | overlap 3465329 CTGCGCGACATCGCC GCCCAGGAC ATGGCG GTTCTGGGC TTTTCGGGGTTCCGC TERM 3838 3465449 - 3465413 - g 86 -16.5 -3.53811 | opp_overlap 3465407 3465406 3465404 CGCAGCTGCGCCAAA GCCTGACCGCCAGCGGC TGG ACCGCCAGCGGCGAGGC GGTGGCCTATTTCTA Rru_A3007 3464938 - 3465531 + | SOUL heme-binding protein Rru_A3008 3465844 - 3465533 - | hypothetical protein TERM 3839 3465898 - 3465878 - H 74 -12.7 -3.18582 | opp_overlap 3465869 3465868 GATCCCATGGACCAA TCTTCCCTT AAA AAGGGAAGA TGCGGCCCAAATTTC TERM 3840 3466086 - 3466098 + H 100 -9.1 -5.10461 | opp_overlap 3466085 3466084 3466080, overlap 3466080 TCGACAGGACAAAGG CGCGA TCC TCGCG TTTTTGTTCCATGCC TERM 3841 3466150 - 3466121 - H 86 -12.8 -3.86897 | gap 1 TCCATGCCTTAGAAA CGCGGCGCCGCGG CTCGT CCGCCGC-CCGCG ACGGCCGCAAAGCGG Rru_A3009 3466179 - 3467510 + | aminotransferase Rru_A3010 3468315 - 3467521 - | DeoR family transcriptional regulator TERM 3842 3468114 - 3468100 - G 74 -12.8 -3.53012 | opp_overlap 3468108 CGGCTCGGGGCCAAA GGGGCG GAC CGCCCC GCCATAGGTGCGGTT Rru_A3011 3468426 - 3469133 + | isochorismatase hydrolase Rru_A3012 3469961 - 3469158 - | binding-protein dependent transport system inner membrane protein Rru_A3013 3470839 - 3469973 - | binding-protein dependent transport system inner membrane protein Rru_A3014 3471939 - 3470845 - | ABC transporter component TERM 3843 3472026 - 3471980 - R 100 -21.6 -4.66987 | gap 1, opp_overlap 3471998, overlap 3471985 GAGACGTGAAGAAAA GAGCACGGCGCGGCGGGACGG GTGGGG CCGTCCCGCCGCGCGG-GATC AGCCGCGAACCCGTT TERM 3844 3472022 - 3471985 - R 100 -25.6 -3.02434 | opp_overlap 3471998, overlap 3471980 GTGAAGAAAAGAGCA CGGCGCGGCGGGACGG GTGGGG CCGTCCCGCCGCGCGG GATCAGCCGCGAACC Rru_A3015 3473173 - 3472025 - | twin-arginine translocation pathway signal Rru_A3016 3473381 - 3474382 + | aminoglycoside phosphotransferase TERM 3845 3474531 - 3474541 + G 79 -8.2 -4.30576 | overlap 3474500 GCGCTTCGCCGAGGT CGGC TGC GCCG TTTTGGTGGTGGCGC fabG 3474442 - 3475233 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 3846 3475261 - 3475283 + F 79 -8.5 -4.56597 | gap 1 AAATGACGGGGGCGG CGGACTATCG AGCC CGATAG-CCG TTTTTACGCGAGGCC Rru_A3018 3475582 - 3475932 + | hypothetical protein TERM 3847 3475998 - 3476029 + F 81 -13.7 -3.28791 | opp_overlap 3475995, overlap 3476023 CTCCCTATATTAGGG CGGCGGGCCTGAG TAAAAT TTCAGGCACGCCG TTCTAAACCGCGCGT TERM 3848 3476184 - 3476172 - f 80 -10.5 -4.07687 | ATCTTGCCGGGAAAA GGCGC GCC GCGCC ACCCGGACTTTCAGG TERM 3849 3476420 - 3476399 - g 74 -2.3 -4.72272 | gap 1, overlap 3476416 GTCCCCGATGAAAAA CGC-AGCTTT TCC AAAGATCGCG ATCTGGCCGTTCAGG Rru_A3019 3476219 - 3476482 + | hypothetical protein TERM 3850 3476916 - 3476904 - g 93 -10.5 -4.60041 | opp_overlap 3476907 ACCGATCTGCAAAAA GCCCG CGA CGGGC TGGTCGGCGTGCTGT Rru_A3020 3476556 - 3477002 + | hypothetical protein Rru_A3021 3479663 - 3477618 - | hypothetical protein TERM 3851 3477917 - 3477902 - G 77 -10.4 -3.89617 | overlap 3477896 AGTCAGAAATGTAAA CCCCCT CAAT AGGGGG CCTCGAATATGTCAA Rru_A3022 3480560 - 3481333 + | hypothetical protein TERM 3852 3481496 - 3481540 + G 71 -9.7 -3.78934 | opp_overlap 3481520, overlap 3481493 3481499 ACCGCGGGACCGGGA GGATGGGGGGCGAGGCCGAGG AAA CCCCGGCGACGCCCAGCGTTC TTCTTGTCGGCGCCG Rru_A3023 3481330 - 3481788 + | hypothetical protein Rru_A3024 3481785 - 3482411 + | prolyl 4-hydroxylase, alpha subunit Rru_A3025 3482478 - 3482792 + | hypothetical protein Rru_A3026 3482863 - 3483885 + | Hpr(Ser) kinase/phosphatase Rru_A3027 3483878 - 3484744 + | sulfotransferase Rru_A3028 3485131 - 3486909 + | asparagine synthase Rru_A3029 3488770 - 3486947 - | D-fructose-6-phosphate amidotransferase TERM 3853 3488587 - 3488603 + g 75 -9.4 -4.14392 | TGATGCCGGCCAGCG GCGCCT CGACT AGGCGC TTTTCCAGATTGCCC Rru_A3030 3490254 - 3488824 - | glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase TERM 3854 3489915 - 3489893 - G 75 -9 -4.07687 | overlap 3489894 ACGGTGCCGTCAAAA CCGGCCAAGG CTT CCCCGGCCTG GGCCACCGCATGGGC Rru_A3031 3490378 - 3491148 + | 2-phosphoglycolate phosphatase TERM 3855 3491342 - 3491324 - f 72 -11.6 -3.41203 | opp_overlap 3491325, overlap 3491318 3491325 AAAACCCAAGACCAA GGCCCCCG TTT CGGGGGCT TTTCGTTTTTCCGGG TERM 3856 3491325 - 3491341 + F 100 -15.1 -4.77757 | opp_overlap 3491324 3491318 3491325 AAACCCAAGACCAAG GCCCCCG TTT CGGGGGC TTTTCGTTTTTCCGG TERM 3857 3491341 - 3491325 - f 76 -15.1 -2.63637 | opp_overlap 3491325, overlap 3491324 3491318 AAACCCAAGACCAAG GCCCCCG TTT CGGGGGC TTTTCGTTTTTCCGG Rru_A3032 3491715 - 3492080 + | hypothetical protein Rru_A3033 3492134 - 3492685 + | hypothetical protein TERM 3858 3492712 - 3492724 + F 85 -3.3 -5.34555 | opp_overlap 3492712 GAAAAGGGGGGTAAA GGGAT CCG ACCCC TTTTTTATCCTCTGC Rru_A3034 3492944 - 3493843 + | hypothetical protein Rru_A3035 3494054 - 3494485 + | nuclease (SNase-like) Rru_A3036 3494534 - 3497317 + | helicase c2 TERM 3859 3498708 - 3498667 - g 72 -11.6 -3.53012 | TCGGCGGCCTGCAAA CGGCAACCGACGCCATCA GCGAGG TGATGGCGCTGATCACCG CCATCGCCGCCCAAA Rru_A3037 3497481 - 3499187 + | chemotaxis sensory transducer TERM 3860 3499303 - 3499313 + F 70 -3.2 -4.6902 | opp_overlap 3499282, overlap 3499292 CGGATGCCCGGACGG CGGT TAT ACTG TTTTTCCCCTTCTAG Rru_A3038 3499385 - 3499783 + | hypothetical protein TERM 3861 3499828 - 3499805 - f 79 -15.2 -2.9675 | overlap 3499800 GATCGGATAAGCAGA GGGGGGGGGC GCCC GCCGCCCCCC GTCCCCCGGTCTCCA TERM 3862 3501797 - 3501768 - g 79 -2 -5.02074 | overlap 3501769 CGATCGGCGAAAAAA TCGCCCTCGACA CCCGGC TGTCGATGGTGC CGGTCGGCGTGCTCG TERM 3863 3501959 - 3501944 - g 73 -3.9 -4.58395 | overlap 3501945 3501946 3501956 CCGACCGCCGAAAAA CGCCC GGCAAA GGGCA ATCCCGCCGGCGCTC Rru_A3039 3499877 - 3503080 + | PAS/PAC sensor hybrid histidine kinase TERM 3864 3503118 - 3503143 + T 78 -10.3 -3.96148 | TTTATTCCCTGGAGT GGGAGAGCCGG TTTC CCGACCCTCCC TTTATCCTACAGACG TERM 3865 3503165 - 3503200 + T 93 -11.1 -4.39166 | opp_overlap 3503157 3503177 CTACAGACGAAGTTC GACCCGGAGAATGAC CGCCAA GCCGTGCTCCGGGTC TTTTCGTATCTGCAG TERM 3866 3503479 - 3503504 + T 78 -10.3 -3.96148 | opp_overlap 3503457 3503456, overlap 3503474 TTCAATCCCTGGAGC GGGAGAGCCGG TTTC CCGACCCTCCC TTTATCCTACAGACG TERM 3867 3503526 - 3503561 + T 87 -10.3 -4.41353 | opp_overlap 3503538 3503540 CTACAGACGACGTTC GACCCGGAGAGAGAC CGCCAA GCCGCGCTCCGGGTC TTTTCGTCTGTCTGG Rru_A3040 3504769 - 3503624 - | aminotransferase, class V TERM 3868 3504569 - 3504541 - G 72 -13.1 -3.09193 | opp_overlap 3504563 AGGACACTGAGGGAA CGACGGCGATGCC CTC GACATCGGCGCCG GTCAGCCCGGCATAC Rru_A3041 3504895 - 3506298 + | GntR family transcriptional regulator TERM 3869 3506934 - 3506981 + G 73 -11.3 -3.64283 | gap 3, overlap 3506936 3506964 ATGCCATCGGCGGCA CACGTCCC-GGCCG-CGCCGTGCC TTT GGC-CGGCGGTGGGCAGGGACGTC TTGTTCGCAGCTTTC TERM 3870 3506936 - 3506979 + G 77 -13.9 -3.39556 | gap 3, overlap 3506934 3506964 GCCATCGGCGGCACA CGTCCC-GGCCG-CGCCGTGCC TTT GGC-CGGCGGTGGGCAGGGACG TCTTGTTCGCAGCTT TERM 3871 3507241 - 3507263 + G 83 -12.6 -4.03234 | GGCCCTGGTGCGCGC GGCCGGCGGC GAG GCCGTGGGCC TTTATCTCGGCAGCG Rru_A3042 3506414 - 3507370 + | hypothetical protein Rru_A3043 3507382 - 3507729 + | hypothetical protein TERM 3872 3507860 - 3507835 - g 72 -11.7 -3.56643 | opp_overlap 3507848 CCCAGACTTCCCAAA CGGCCAGGCGC CCCG GCGCCGCGCCG TCACCGTCTTCTTTG TERM 3873 3508242 - 3508253 + G 86 -7.2 -4.93365 | overlap 3508241 TTCGGCATGAGCTTC GCCG GCGC CGGC TTTTTCGTTGTCGGC Rru_A3044 3507807 - 3508547 + | hypothetical protein Rru_A3045 3508544 - 3509131 + | hypothetical protein TERM 3874 3509125 - 3509175 + T 100 -22.2 -3.21099 | gap 1, overlap 3509126 CTACGAGATCCTGCC G-CCTTAGAGCGGTGAGCGTGAA ATCGGG TTCACGCTCACCACTCTAAGGTC TTGATAGTCAAGCAA TERM 3875 3509126 - 3509173 + T 100 -25.9 -3.17051 | overlap 3509125 TACGAGATCCTGCCG CCTTAGAGCGGTGAGCGTGAA ATCGGG TTCACGCTCACCACTCTAAGG TCTTGATAGTCAAGC Rru_A3046 3510112 - 3509231 - | radical SAM family protein TERM 3876 3509475 - 3509451 - G 82 -4.9 -4.8622 | overlap 3509453 3509463 3509464 TCCTGGAAGGAAAAA CTCCCCTGGAA ACG CTCCAGGAACG ACTCCTTGCGCTCGT TERM 3877 3509926 - 3509911 - G 82 -6.1 -4.83615 | CATCGCCCAGAAAAA CCCGA TGGGCC TCGGG CCACAGGCGGGCGGC Rru_A3047 3510245 - 3510682 + | hypothetical protein TERM 3878 3510721 - 3510685 - T 95 -13.5 -4.07568 | opp_overlap 3510704 3510704, overlap 3510686 3510704 GCCGCCCGGCTAAAA CGCCCCCCGGCCGCACA ACG CGCGCGGTCGGGGGGAT CGGCGCTCTTATTCG TERM 3879 3510720 - 3510686 - T 87 -17 -3.04398 | opp_overlap 3510704 3510704, overlap 3510685 3510704 CCGCCCGGCTAAAAC GCCCCCCGGCCGCACA ACG CGCGCGGTCGGGGGGA TCGGCGCTCTTATTC Rru_A3048 3512244 - 3510730 - | glycine dehydrogenase subunit 2 TERM 3880 3510835 - 3510804 - G 76 -15 -3.14564 | opp_overlap 3510826 CCAGGGTTTCATCAA GGCGACGGCGCGGC GTCA GCTGCGGCGCCGCC TTGAAGGCTTCGGCG TERM 3881 3510826 - 3510853 + g 72 -8.4 -4.07568 | opp_overlap 3510804 GCGCGGCGTCAGCTG CGGCGCCG CCTTGAAGGCTT CGGCGCCG TTTTCGCGGGCGCGC Rru_A3049 3513591 - 3512245 - | glycine dehydrogenase subunit 1 TERM 3882 3513629 - 3513616 - R 80 -3.7 -5.02074 | opp_overlap 3513624, overlap 3513617 3513618 TCAGCCTCGAAAAAA TGCCC GGAC GGGCC GGTGGCGGCGCCGCT Rru_A3050 3514028 - 3513648 - | glycine cleavage H-protein Rru_A3051 3515234 - 3514107 - | glycine cleavage system aminomethyltransferase T Rru_A3052 3516212 - 3515601 - | hypothetical protein TERM 3883 3515678 - 3515688 + g 81 -8.2 -4.46404 | overlap 3515685 CGGCATAGACCTGTT CGCC GGC GGCG TTTTCGTCTTCCTTG Rru_A3053 3516320 - 3517285 + | homoserine kinase TERM 3884 3517446 - 3517407 - g 70 -6.5 -4.2349 | gap 3, overlap 3517410 GGGCGACACCGAAAA GGAGTTGT-GG-GG-CGGCG AAA CGCCGACCACCAACAACCGC ATGGAATTGATGGCG Rru_A3054 3517282 - 3517782 + | ribonuclease H Rru_A3055 3518698 - 3517793 - | hypothetical protein Rru_A3056 3520256 - 3518796 - | major facilitator transporter TERM 3885 3519625 - 3519600 - G 79 -8.9 -4.30987 | overlap 3519615 ACCGCTGAGAACAAA GCCCAGGCC ATCGAAGG GGCCGGGGC TATCACGGCGGCCGC TERM 3886 3520182 - 3520146 - G 75 -2.7 -4.72272 | overlap 3520148 3520170 3520171 GGCTTCCATGAAAAA GGCGCCGGCCACCAGAT AGG ACAAGGCGGCCGAGGTC GGCGCGGATCGGGGG TERM 3887 3520310 - 3520277 - R 82 -14.5 -3.1994 | overlap 3520278 GACACGATCCATGAA CCCGGCCGCCCCCTT CTCC AAGGACGCGGCCGGT GACGATGAGCAAAAC TERM 3888 3520309 - 3520278 - R 85 -18 -2.51642 | overlap 3520277 ACACGATCCATGAAC CCGGCCGCCCCCTT CTCC AAGGACGCGGCCGG TGACGATGAGCAAAA Rru_A3057 3520806 - 3520327 - | Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3889 3520589 - 3520571 - G 77 -3.8 -4.77165 | overlap 3520572 GCGGCGAGAACAAAA GCGTCA TTGACGG CGACGC AGGCGACCTTGGTCA TERM 3890 3520852 - 3520871 + r 71 -7.8 -4.07568 | overlap 3520852 CATATGGGAGCGCCC GGGGGG ACCGACAC CCCCCC TTTTCAGGACGAAGG Rru_A3058 3523022 - 3520875 - | putative suppressor for copper-sensitivity B precursor TERM 3891 3521201 - 3521230 + g 77 -12.1 -3.72695 | CCACCAGCCGCGCCA CCGCCTCGGGC GACCAGCG GCCCCAGGCGG TTTCCTCAAGGGCCT TERM 3892 3521870 - 3521884 + g 72 -8.5 -4.08216 | opp_overlap 3521840 GAATGCCCCAGCCCA CCGCC ATGCC GGCGG TTTTCAGGCCGATGG Rru_A3059 3523094 - 3523753 + | hypothetical protein Rru_A3060 3523910 - 3524125 + | hypothetical protein TERM 3893 3524405 - 3524389 - T 74 -6.6 -4.29656 | opp_overlap 3524389 3524388, overlap 3524404 GATAAAATGTGAAAA CCTTCT GCTTA AGAAGG GTCTTTTCGCCCCTA TERM 3894 3525446 - 3525414 - T 71 -6.4 -4.2558 | gap 2, opp_overlap 3525415, overlap 3525415 GAGTCTCGATCAAAA GTTCTGCGTTAAAGGG GTT CCCTTTAACGC-GG-C GTGATCTACCGCCGG TERM 3895 3525415 - 3525447 + T 72 -13.5 -2.62184 | opp_overlap 3525414 3525415 AGTCTCGATCAAAAG TTCTGCGTTAAAGGG GTT CCCTTTAACGCGGCG TGATCTACCGCCGGG Rru_A3061 3526372 - 3525452 - | hypothetical protein TERM 3896 3526311 - 3526294 - G 75 -3.3 -4.82901 | gap 1, overlap 3526295 GCGGGGTCAGAAAAA TCCG-GCC AAC GGCGCGGC GGTAGCGGGCCTCGG TERM 3897 3526458 - 3526435 - R 82 -12.4 -3.66178 | TTGGCGAATGGGAAA CGGCCGGC CCCGCGCC GCCGGCCG CCCTCTCGAGAAGAC Rru_A3062 3528489 - 3526474 - | methylmalonyl-CoA mutase TERM 3898 3526929 - 3526987 + g 74 -15.2 -3.01712 | gap 3, opp_overlap 3526907 GAAGGCGCACCTCGG CCAGCCGGCCG-CCGGCTTCGGGCTGGGC CGCC GCCC-GCCCGACTCCGGTCGG-CGCCCGG TATTCGCCAAACACC TERM 3899 3527847 - 3527815 - G 77 -4 -4.72272 | GGCGTTGACGAAAAA GCTGATGCGCCCGA CCACC TCGGGGAAATCGGC TTCGGGTACCTGACC TERM 3900 3527900 - 3527940 + g 73 -13.2 -3.28416 | gap 1 ACGGCGATCGCCGTG GCCAGGGCGAAGGCC-AGC TCCT GCTCGGGCGTCGCCCCGGC TTCCTGTAGGTGATA TERM 3901 3528550 - 3528538 - H 78 -4.7 -4.86033 | AAATTCGGACAAAAA CGGGG ATT CCGCG CAACTATGTTGTTCA Rru_A3063 3528708 - 3529991 + | crotonyl-CoA reductase TERM 3902 3530959 - 3530929 - g 75 -3.2 -4.77438 | overlap 3530930 ACCGAGGAGCAAAAA CGCCAGTGGC TGCCCCGGTTG GCCAGCGGCG AGATCCTGCCCACCG Rru_A3064 3530089 - 3531780 + | isovaleryl-CoA dehydrogenase TERM 3903 3531828 - 3531850 + F 100 -20.6 -5.75342 | CGCGACCCGCCTTGG GGCCGGGGAG ATC CTCCCCGGCC TTTTTTTTGCGCGCC Rru_A3065 3531969 - 3532265 + | XRE family transcriptional regulator Rru_A3066 3532429 - 3533025 + | NAD(P)H dehydrogenase (quinone) Rru_A3067 3533037 - 3533636 + | TetR family transcriptional regulator Rru_A3068 3533999 - 3533712 - | plasmid maintenance system antidote protein Rru_A3069 3534282 - 3534004 - | plasmid maintenance system killer TERM 3904 3534229 - 3534272 + g 76 -2.4 -4.93296 | CTGGAAGTCCGATAC CCGCTGTCCGGTAAG-GAAC TTGGCC GTGCGCTTGTCGG-CTGCGG TTTTTATCATCCTCC TERM 3905 3534586 - 3534537 - R 89 -12.1 -4.11484 | gap 1, overlap 3534539 GCCAATGTGCCAAAA TAGGGCGTCATCGGCCTCTCCCTC GGG GAAGGTGAAGCCGATC-CGCCCCG CCCGATCACGCTGCG TERM 3906 3534584 - 3534539 - R 100 -16.9 -3.6543 | gap 1, overlap 3534537 CAATGTGCCAAAATA GGGCGTCATCGGCCTCTCCCTC GGG GAAGGTGAAGCCGATC-CGCCC CGCCCGATCACGCTG Rru_A3070 3535068 - 3534592 - | AsnC family transcriptional regulator Rru_A3071 3535202 - 3536137 + | hypothetical protein TERM 3907 3536692 - 3536655 - g 77 -5.5 -4.58395 | gap 1, overlap 3536638 3536657 3536686 GCCAGCGGGCAAAAA GCC-GCGTGGCTGACC TTCCTGT GGCAAGCCACCCTGGC GCTCGGCGCCGGTAT TERM 3908 3537216 - 3537202 - g 74 -7.8 -4.17089 | overlap 3537203 TGCAAAGCCGCAAAA CCGTCG CCT CGACGA TCCGCCTGCGCATCC TERM 3909 3538344 - 3538312 - g 81 -16.4 -3.13522 | gap 1, overlap 3538310 AGGCGCGGATCAAGA CGCGGCCGATCAAAC AGTG GTTCG-TCGGCCGCG AATTCAACCGCATGA TERM 3910 3538397 - 3538365 - g 74 -10.5 -3.79519 | AACCGCATGATGAAA CAGGCCTTCGATGCC GCC GGCATCGAGATCCCG TTCCCCCATACCACC Rru_A3072 3536238 - 3538559 + | MscS mechanosensitive ion channel Rru_A3073 3539238 - 3538519 - | phosphoesterase, PA-phosphatase related Rru_A3074 3540776 - 3539235 - | glycosyltransferase TERM 3911 3539935 - 3539880 - G 91 -14 -4.18421 | gap 3 GAACGACAGAAAGAA CCGGATG-CGATAGCCGCGCCGC-GCC CGCTC GTCGGCGGCGCGGCGCTCGTCA-CCGG GCCCGTATCCGCCGA TERM 3912 3540453 - 3540421 - G 72 -4.8 -4.56775 | gap 2, overlap 3540404 3540440 3540443 ACGGCGGCCCAAAAA GCCACCCGGGC-G-TC ATA GAGCAGCCCGGCCAGC CGCCAGACGGCGATG Rru_A3075 3541885 - 3540785 - | permease YjgP/YjgQ Rru_A3076 3542168 - 3542863 + | ATP:cob(I)alamin adenosyltransferase TERM 3913 3543159 - 3543144 - g 70 -6.1 -4.22338 | overlap 3543145 ACTATAACGTGAAAA TCCGC GTTAAA GCGGA TAACACGGGGGTCGA TERM 3914 3543729 - 3543685 - g 81 -3.6 -5.10208 | gap 2, overlap 3543687 GAAGGCCAAGAAAAA GCCG-ATCGAGACCCTG-TC TCCGGCC GATCTGGGCGTCGATCCGGC CCCCCGGCTGACCAC Rru_A3077 3543095 - 3543844 + | electron transfer flavoprotein subunit beta TERM 3915 3544526 - 3544502 - g 73 -13.6 -3.28791 | gap 1, opp_overlap 3544509 AGCCCTGGCCGACAA GCTGGGCGCCG CCGT CGGCGCC-AGC CGCGCCGCCGTCGAT TERM 3916 3544509 - 3544547 + G 71 -14.4 -2.87132 | opp_overlap 3544502 GCCGACAAGCTGGGC GCCGCCGTCGGCGCCAGC CGC GCCGCCGTCGATGCCGGC TATGTGCCCAACGAC TERM 3917 3544707 - 3544739 + G 78 -14.2 -3.54424 | opp_overlap 3544686 GAAGCTCCCATCTTC CAGGTCGCCGACTA CGGGC TGGTCGCCGACCTG TTTCAGGCCGTGCCC Rru_A3078 3543846 - 3544781 + | electron transfer flavoprotein Rru_A3079 3544824 - 3545696 + | 3-hydroxybutyryl-CoA dehydrogenase TERM 3918 3545717 - 3545762 + F 100 -18.9 -3.53012 | opp_overlap 3545717 3545720, overlap 3545721 3545723 GCGATCATCAGGAGA CCACGACCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGGTGTTCG TTTGGGCGCCCAAGG TERM 3919 3545762 - 3545717 - f 88 -18.9 -2.83715 | opp_overlap 3545717 3545721 3545723, overlap 3545720 GCGATCATCAGGAGA CCACGACCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGGTGTTCG TTTGGGCGCCCAAGG TERM 3920 3545758 - 3545720 - f 100 -22.5 -2.67694 | gap 1, opp_overlap 3545717 3545721 3545723, overlap 3545717 ATCATCAGGAGACCA CGACCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGGT-G TTCGTTTGGGCGCCC TERM 3921 3545721 - 3545758 + F 100 -22.7 -3.51232 | opp_overlap 3545720 3545717, overlap 3545717 3545723 TCATCAGGAGACCAC GACCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGGTG TTCGTTTGGGCGCCC TERM 3922 3545723 - 3545756 + F 100 -25.3 -3.33151 | opp_overlap 3545720 3545717, overlap 3545721 3545717 ATCAGGAGACCACGA CCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGG TGTTCGTTTGGGCGC Rru_A3080 3545804 - 3547000 + | hypothetical protein TERM 3923 3547295 - 3547249 - g 80 -9.3 -4.25104 | gap 1, opp_overlap 3547249 CTTGGCCGATGAAAA GGCCGGCGCGCGCATCGCTCAA CGCA TCGTGCGACT-GCGCAACGGCC TGTTCGGCGATGTGA Rru_A3081 3547187 - 3547483 + | hypothetical protein Rru_A3082 3547484 - 3547765 + | transcriptional regulator TERM 3924 3547791 - 3547831 + T 91 -14 -3.72576 | overlap 3547792 GGACAGTCCGTGTCG ACCCCGCGCCCGCT CCGTCTACCAAAA AGCGGGCGCGGGGG TTTGATCAGGGGGCG TERM 3925 3547792 - 3547830 + T 84 -17.5 -2.83403 | overlap 3547791 GACAGTCCGTGTCGA CCCCGCGCCCGCT CCGTCTACCAAAA AGCGGGCGCGGGG GTTTGATCAGGGGGC Rru_A3083 3548391 - 3547837 - | NADPH-dependent FMN reductase TERM 3926 3547993 - 3547965 - G 78 -15.3 -3.08278 | TGAACGAGATATAGA CCTCGCCACCCAT GAC ATGGGCGCCGAGG ATTCCCAGGATCTGG TERM 3927 3548444 - 3548413 - R 100 -9.4 -5.00616 | opp_overlap 3548412 3548413 3548418 3548419, overlap 3548419 CCCCCTTTCAAAAAA GAAAAAGACCCCGG TGAT CTGGGGCCGTTTTC CTTCTCTGCCAAGGA TERM 3928 3548438 - 3548419 - R 100 -7 -5.75538 | opp_overlap 3548418 3548413 3548412 3548419, overlap 3548413 TTCAAAAAAGAAAAA GACCCCGG TGAT CTGGGGCC GTTTTCCTTCTCTGC engA 3549984 - 3548482 - | GTP-binding protein EngA Rru_A3085 3551446 - 3550079 - | Pyrrolo-quinoline quinone Rru_A3086 3552197 - 3551436 - | hypothetical protein TERM 3929 3551533 - 3551490 - G 79 -16.6 -3.01791 | overlap 3551493 AGCCGGGCCCGAAGA CGAGCTCTCGCCCGACTCCG CCGG CGGAGTCGGGCTGGCGCCCA GGGCGGCCAGCAGAC TERM 3930 3551530 - 3551493 - G 80 -16.9 -2.73875 | overlap 3551490 CGGGCCCGAAGACGA GCTCTCGCCCGACTCCG CCGG CGGAGTCGGGCTGGCGC CCAGGGCGGCCAGCA Rru_A3087 3552438 - 3552899 + | hypothetical protein Rru_A3088 3552944 - 3553288 + | hypothetical protein Rru_A3089 3553443 - 3553634 + | hypothetical protein TERM 3931 3553690 - 3553635 - T 74 -13.1 -3.23296 | gap 1, overlap 3553628 AAGAATATCGAGTAA CCCGCCCCATCCCCGCC-CGGGTCAG CCGTT CCGCCCCAAGGCGGAGCGGAGACGGG CGCGTGCCAGGAATA Rru_A3090 3554588 - 3553656 - | glycosyl transferase family protein TERM 3932 3553824 - 3553790 - G 82 -11.5 -4.07124 | overlap 3553792 GACCATCCAGATAAA CACTCCGCG-CCATCCG CCA CAGACGGGCGCGGAG-G ATGGCATCGCGTTCC TERM 3933 3553823 - 3553792 - G 83 -15.2 -3.6269 | gap 1, overlap 3553790 CCATCCAGATAAACA CTCCGCG-CCATCCG CCA CAGACGGGCGCGGAG GATGGCATCGCGTTC Rru_A3091 3556897 - 3554585 - | glycosyl transferase, group 1 Rru_A3092 3558387 - 3556912 - | parallel beta-helix repeat-containing protein TERM 3934 3557700 - 3557725 + g 77 -6.7 -4.51174 | gap 1, overlap 3557707 3557713 TCAGAATATTCGCCC CGGCCCGCGAGG TGG CCA-GCAGGCCG TTTTCGTTATCGTGG TERM 3935 3558345 - 3558334 - G 83 -3.6 -5.16472 | overlap 3558342 AAAAAGGCGAAAAAA CCGA CAAG CCGG GCCGATCTCGGATAA Rru_A3093 3559922 - 3558399 - | O-antigen and teichoic acid-like export protein TERM 3936 3558495 - 3558482 - G 75 -3.1 -4.75309 | gap 1, overlap 3558483 3558486 CGAAACGGAACAAAA CCATGC CCA GCA-GG CCGTAACAGACCAGG TERM 3937 3559944 - 3559986 + r 76 -9.7 -4.12942 | gap 1, overlap 3559931 GCATCCCTCGGCGGC GGCAAGGCGGCGCGGCGCGG CCGG CCGCGCCCCGG-GACTTGGC TTTTCACCGGTTTCG Rru_A3094 3561253 - 3559919 - | O-antigen polymerase TERM 3938 3560595 - 3560582 - G 82 -4.5 -4.88736 | overlap 3560584 3560585 CAGCATCCAGAAAAA CATCG CCAC CGACG CCAGCAGGGCGCCGC Rru_A3095 3561820 - 3562800 + | hypothetical protein TERM 3939 3562832 - 3562856 + F 100 -19.3 -3.93288 | opp_overlap 3562832 GACGAGCACTAAGAA CGCCGACGTCC CCA GGGCGTCGGCG TTTCGTTGGATCAAA TERM 3940 3562856 - 3562832 - f 100 -17.1 -3.75738 | opp_overlap 3562832 GACGAGCACTAAGAA CGCCGACGTCC CCA GGGCGTCGGCG TTTCGTTGGATCAAA TERM 3941 3563116 - 3563087 - g 100 -12.1 -5.00616 | gap 1, overlap 3563089 CCGCCGCCGAAAAAA CGCCCGCCCTCCGC CCG GCGGAGAG-GGGAG ATCGCGCGCGGCCGC TERM 3942 3563698 - 3563669 - g 70 -8.5 -4.00532 | gap 1, opp_overlap 3563664 3563663, overlap 3563664 CGTTGAAAGACGAAA TGGTCGCTATCGGC ATC GCCGAGGGCG-CCA TCACGGTTTTGCGCA Rru_A3096 3563053 - 3564372 + | glycosyl transferase, group 1 TERM 3943 3565781 - 3565759 - g 85 -7.6 -4.82901 | overlap 3565771 GTTGCTGCAGAAAAA GGACTTCGAC AAG GCCGAGGCCC TGGCCGGGGACACCA TERM 3944 3566687 - 3566674 - g 70 -3.7 -4.48987 | overlap 3566675 GGCCTATAATGAAAA GGGCG ATGG CGCCA AGGCAAGCAGCCTGC Rru_A3097 3564389 - 3567190 + | hypothetical protein TERM 3945 3567362 - 3567387 + G 72 -13.2 -3.15544 | overlap 3567370 CCACCGTCCCGCCGG GCGCCGGCGC CCTATC GCGCCGACGC TTCGTCGGCGTCGCC Rru_A3098 3567256 - 3567927 + | hypothetical protein Rru_A3099 3567936 - 3568259 + | hypothetical protein TERM 3946 3568669 - 3568655 - g 84 -9.2 -4.56597 | opp_overlap 3568658, overlap 3568657 GCCGTGCTGGAAAAA GACGGC CGG GCCGCC CTGTTGCCGGCCCCC TERM 3947 3568687 - 3568657 - g 73 -9.5 -3.90048 | opp_overlap 3568658, overlap 3568655 CGTGCTGGAAAAAGA CGGCCGGGCCGCC CTGTT GCCGGCCCCCCCG GGCTCGGGCAAAAGC Rru_A3100 3568310 - 3569191 + | Hpr(Ser) kinase/phosphatase Rru_A3101 3569188 - 3570336 + | hypothetical protein TERM 3948 3571142 - 3571105 - g 100 -12.2 -4.56597 | gap 2, opp_overlap 3571103 3571105, overlap 3571137 CCCCTTGGCGAAAAA TGGCGGGTCTTCGACCGC AATT GCA-TCGAA-ACCCGCCA CGATCTTCTGAAGAT Rru_A3102 3570541 - 3571992 + | sugar transferase TERM 3949 3572133 - 3572190 + G 84 -17 -3.21099 | overlap 3572134 GCCTTTGGTCGCCGG CGCCCTGT-GGGCGGGGGTGACCGCGGC CCGC GCCGTGGTT-CCCCTGCCCGATTGGGCC TTCGTCCTGGCCGAG TERM 3950 3572134 - 3572189 + G 95 -20.5 -2.52516 | overlap 3572133 CCTTTGGTCGCCGGC GCCCTGT-GGGCGGGGGTGACCGCGGC CCGC GCCGTGGTT-CCCCTGCCCGATTGGGC CTTCGTCCTGGCCGA TERM 3951 3572557 - 3572576 + G 77 -7.8 -4.3898 | gap 1, overlap 3572560 ATCGATCTGTTGACG GCGCGCGGC TAC GTCGCG-GC TTTTCTGGCGCTGAT TERM 3952 3573484 - 3573468 - g 73 -3.6 -4.59773 | opp_overlap 3573467 CCTGATGGCCAAAAA CGCCGA GCGCT TTGGCG ACAACCCGGATTTCC Rru_A3103 3572008 - 3574074 + | multi-sensor Signal transduction histidine kinase Rru_A3104 3574071 - 3575417 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 3953 3575769 - 3575789 + G 78 -13.9 -3.55966 | overlap 3575765 3575766 GTCGACGGGGTGCTG GCCCGCCGC CCG GCGGCGGCC TTCCTGTTTTCCTCG TERM 3954 3576077 - 3576090 + G 70 -2.3 -4.67982 | CCACCCCCTGTCCAA CGGCA TCGA TACCG TTTTCTTCGATCCGA Rru_A3105 3575460 - 3576659 + | glycosyl transferases group 1 Rru_A3106 3577141 - 3576692 - | hypothetical protein Rru_A3107 3577151 - 3578578 + | glycosyl transferase, group 1 Rru_A3108 3578642 - 3579628 + | NAD-dependent epimerase/dehydratase TERM 3955 3579740 - 3579767 + G 75 -13.6 -3.47751 | gap 1, overlap 3579734 CCATGCTTCTCGATC GCGCAGCTTCTCT TGA AGA-AAGCTGCGC TTATCGCTTCTTGCA TERM 3956 3579995 - 3580012 + G 71 -12.7 -3.31322 | CCGGAACGCGCGGCT TGCCGCG CATC CGCGGCA TTCTCGCCGATTGCG TERM 3957 3580291 - 3580310 + G 79 -16.4 -2.87647 | opp_overlap 3580284 3580283 CAAAAATCCGGCATG CGCGCCCC CGAT GGGGCGCG TCTGGTGTCGTGGCT TERM 3958 3581148 - 3581094 - g 91 -11.9 -4.24948 | gap 1, opp_overlap 3581130 3581133 CGACGATATCGAAAA CGCGGCCCTGGTCTC-GCCGATCCAG GTGG CGGGATCGGCCGTCGCCCTGGCCGCG CCCGACGAGGGCGGC TERM 3959 3582852 - 3582898 + G 89 -18.1 -3.26471 | TCCCCAGGAGGGCGA GGC-GGCGCTTGCCCTGACCTTC GTC GAAGG-CGGGGGAGGCGCCCGCC TTGATCTGGCCATCG TERM 3960 3583115 - 3583064 - g 70 -9.9 -3.66178 | gap 1, opp_overlap 3583064 3583065 TGGGTCAATGGGAAA GCGGCCCGCGCGCCGCCCTCGCCC TGCGC GAG-GAGGGCTGGTCGCTGGGCGC GCTGTTCGTCCGCGC TERM 3961 3584997 - 3585018 + G 72 -11.5 -3.61398 | overlap 3584993 GGCCGACGCCCTGGG CCCCCGGGC CAAT GTCTGGGGG TTGTTCCCCCCCGCC TERM 3962 3585321 - 3585339 + G 70 -10.2 -3.71848 | GATGCGCTTCGCCTT CGGCCGCA GGC TGCGGCGG TTCTTCATGGACGAG Rru_A3109 3579694 - 3585639 + | aspartate racemase Rru_A3110 3587908 - 3585662 - | cyclic nucleotide-binding domain-containing protein TERM 3963 3585805 - 3585815 + g 70 -2.4 -4.62069 | TCAGGTCGGTTTTCC GGCG CAG CACC TTTTTGCGCTGGGCG TERM 3964 3587973 - 3587947 - R 71 -8.7 -3.73775 | overlap 3587970 TTCACGCTGAGGAAA CGCCGTTCCGA GCCTT CCAGAACGACG CAGGTAAGCATCCCC Rru_A3111 3588704 - 3587922 - | metallophosphoesterase TERM 3965 3588667 - 3588614 - G 72 -11.6 -3.55444 | gap 1, overlap 3588666 CGCCCACCGCGTAAA GCCGGGTCGAGGGCGGCGTCCGCCA GCGCT TGGCCGA-GACGCCGCCGAACCAGC CGCGCAGCAGGGCAA Rru_A3112 3590299 - 3588701 - | 4-cresol dehydrogenase (hydroxylating) TERM 3966 3589928 - 3589898 - G 71 -9 -3.84915 | gap 1 CACATCAAGGAAGAA GGCCGA-GCCCCG CGCCGC CAGAGCGTCGGCC AGGGCGGCCTGCGTC TERM 3967 3590212 - 3590202 - G 76 -2.4 -4.93877 | GTCGAGGAAAGAAAA GGGG TCA CCGC CTCGCCGAAAAGAAT TERM 3968 3590335 - 3590304 - R 70 -4.3 -4.46212 | overlap 3590307 3590308 TCCTCCAGCATAAAA CGACGATCAGCCG ACTTGG CGGCTGATCCAAG GGCCAAGCGTATTGG Rru_A3113 3591347 - 3590310 - | hypothetical protein TERM 3969 3590392 - 3590378 - G 72 -11.4 -3.53444 | opp_overlap 3590377 3590376 3590390 3590391 GCAGTCGCCGCCAAA GGGCGA TCA TCGCCC GATATTTCGGATTGG TERM 3970 3590467 - 3590484 + g 70 -8.3 -3.9461 | opp_overlap 3590451 TCGTGGATCACCGGC CGGGGGG TGAA CCCCCAG TTCTTCTTGAAAGCG TERM 3971 3590831 - 3590818 - G 76 -2.3 -4.93318 | overlap 3590820 TATAACTCATAAAAA GTCGA AGGA TCGTC GTCAAAGCGCCCTTG TERM 3972 3591245 - 3591213 - G 76 -2.5 -4.96848 | TTCGGCATACAAAAA GTGGTTGGTCTGACC AAA GGCCTGATCGATCAC CCGCTGCCAGCCGGC Rru_A3114 3592261 - 3591344 - | polysaccharide deacetylase Rru_A3115 3593335 - 3592310 - | ATPase Rru_A3116 3594980 - 3593349 - | hypothetical protein TERM 3973 3593612 - 3593571 - G 73 -12.2 -3.38812 | gap 1, overlap 3593569 3593573 3593574 CCGGGTCGAATAAGA CACCCGCACGCCGGCGCCG GTCAG CGGCGACAGGGTGCGG-CG ATAAGACCCGGAGAC TERM 3974 3593611 - 3593573 - G 75 -13.7 -3.26444 | overlap 3593571 3593569 3593574 GGGTCGAATAAGACA CCCGCACGCCGGCGCCG GTCAG CGGCGACAGGGTGCGGC GATAAGACCCGGAGA TERM 3975 3593610 - 3593574 - G 80 -17.2 -2.55545 | overlap 3593573 3593571 3593569 GGTCGAATAAGACAC CCGCACGCCGGCGCCG GTCAG CGGCGACAGGGTGCGG CGATAAGACCCGGAG TERM 3976 3594609 - 3594594 - G 70 -2.5 -4.60041 | overlap 3594597 ATTGACCCCCAAAAA CGACT GCTGAT AGCCG TTCAACTCGGAATGG TERM 3977 3594921 - 3594959 + g 79 -17.3 -2.50622 | overlap 3594921 3594928 AACCGCCCCCCCTTG CCGGTCGCCGGCGGAGC GCGAG GCCCCGCCGCCGACCGC GTTCATCCGGTGTGT TERM 3978 3594921 - 3594960 + g 84 -17.1 -3.18239 | gap 1, overlap 3594921 3594928 AACCGCCCCCCCTTG C-CGGTCGCCGGCGGAGC GCGAG GCCCCGCCGCCGACCGCG TTCATCCGGTGTGTC Rru_A3117 3595646 - 3595017 - | polysaccharide export protein Rru_A3118 3595958 - 3597556 + | lipopolysaccharide biosynthesis Rru_A3119 3597561 - 3598568 + | ATPases involved in chromosome partitioning-like TERM 3979 3599248 - 3599287 + G 100 -15.9 -4.87807 | gap 3 CTTCGGGGCGGTGAT CAGCG-CCGTCGTCCACCGC TCG GCG-TGG-CGACGGGCGCTG TTTTTGCTCTCTTGC Rru_A3120 3598607 - 3600178 + | hypothetical protein Rru_A3121 3600181 - 3602106 + | asparagine synthase, glutamine-hydrolyzing Rru_A3122 3602103 - 3602387 + | hypothetical protein Rru_A3123 3602390 - 3603160 + | esterase/lipase/thioesterase family protein Rru_A3124 3603157 - 3603999 + | Alpha/beta hydrolase fold Rru_A3125 3605216 - 3603996 - | glycosyl transferase, group 1 TERM 3980 3605248 - 3605221 - H 80 -11.2 -3.76167 | gap 1, overlap 3605212 3605219 GCACAAGGCAAAAGA CGCCGCCCCCCGC CCG GCGGAGCG-GGCG ATGAGCCTGATCAAG TERM 3981 3605387 - 3605410 + G 78 -14.6 -3.22298 | gap 1, overlap 3605389 GGCCTGGAACCCGCC GA-CGCCGGGG CGA CCCCGGCGATC TTCGTCCTCGATCAG TERM 3982 3605389 - 3605407 + G 79 -17.4 -2.50195 | overlap 3605387 CCTGGAACCCGCCGA CGCCGGGG CGA CCCCGGCG ATCTTCGTCCTCGAT TERM 3983 3605848 - 3605800 - g 81 -8.8 -4.56597 | opp_overlap 3605844 CCTGGCCCGCAAAAA GGCGAGGCTGGA-GCGCCAGGGCA CGA TGACCCTGCGCCTCCA-CCGCACC GCCGATGCCGGGGCT Rru_A3126 3605249 - 3606325 + | hypothetical protein Rru_A3127 3606941 - 3606306 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Rru_A3128 3607050 - 3607835 + | AraC family transcriptional regulator Rru_A3129 3608968 - 3607832 - | ABC-2 transporter component TERM 3984 3608610 - 3608621 + g 72 -7.2 -4.20354 | overlap 3608616 TCCATCAGCACCACC GGGC GGTT GCCC TTTTGCAATTCGCTT Rru_A3130 3609915 - 3608965 - | ABC transporter component Rru_A3131 3610946 - 3609912 - | secretion protein HlyD TERM 3985 3610652 - 3610627 - G 75 -11.8 -3.6707 | overlap 3610620 AGCGAATAGGCCAAA GCCGCCTTCG CCTCGT CGACGGCGGC GCTCAACATGGCCAG TERM 3986 3612601 - 3612591 - g 70 -2.4 -4.64861 | CTGCTGGAAAACAAA CCGG GAT CGGG CACGCTGCTTGTGAT TERM 3987 3612743 - 3612759 + G 85 -10.1 -4.18506 | GATCGGTCGGCTCGG CGGCGAG GAA TTCGCCG TTCTTTTGCAAATGG Rru_A3132 3611580 - 3613061 + | diguanylate cyclase with GAF sensor Rru_A3133 3613122 - 3613337 + | hypothetical protein TERM 3988 3613579 - 3613595 + G 73 -6.5 -4.42238 | overlap 3613574 GGCGATGTTTGCCGT CGCCC ATGCCGG GGGCG TTTTCGTTCCGATCA TERM 3989 3614038 - 3614063 + G 72 -6.7 -4.19817 | opp_overlap 3614034 CAGTCAACTGACCAC CGCCTTCGCCG TCGG CGCCGAGGCCG TTTTGCATGACTACC Rru_A3134 3613334 - 3614950 + | AMP-dependent synthetase and ligase TERM 3990 3615081 - 3615129 + G 78 -16 -3.08679 | gap 2 GGGCGCGGTGAGCGC GCGCATCGCCGCCCTGCGCGCGGC GCT GCCG-GC-CGGGATGGCGATCCGC TATTCCCTCAAGGCC Rru_A3135 3614947 - 3616161 + | Orn/DAP/Arg decarboxylase 2 TERM 3991 3616194 - 3616215 + T 70 -10.1 -3.54408 | GCCGGGTTATTCCCC CGGCCTCGA TGGG TCGAGACCG TTCATTTCACTGCCC Rru_A3136 3617030 - 3616401 - | putative partition-related protein TERM 3992 3616476 - 3616437 - G 72 -12 -3.51202 | gap 1, opp_overlap 3616460, overlap 3616433 3616459 3616460 GATGAAATCAAGCAA CGGCGTCCATTCCGCGCGA TAA TCG-GCGGCGCGGCCGCCG GGCAGATCGAACAGG TERM 3993 3616476 - 3616460 - G 71 -15.1 -2.57211 | opp_overlap 3616460, overlap 3616437 3616459 3616433 ATTCCGCGCGATAAT CGGCGGC GCG GCCGCCG GGCAGATCGAACAGG TERM 3994 3616863 - 3616883 + g 78 -10.3 -4.07568 | overlap 3616867 GATCCCCTGGATCGG CGCCGCTCC CTC GGGCCGGCG TTTTAGCCAGCCCAG TERM 3995 3616867 - 3616903 + g 72 -5.7 -4.38712 | gap 1, overlap 3616863 CCCTGGATCGGCGCC GCTCCCTCGGGCCGGC GTTTTA GCCAGCCC-AGCGCGC TTTTCTGGCGGTCAA TERM 3996 3617309 - 3617342 + G 77 -15.9 -3.06492 | overlap 3617287 3617304 GCGGGCGACGGGCCC GCGCCGTCGATCGCC GAGG GGCTTTCGGCGGCGC TGTTCCAATCCGTGG TERM 3997 3617777 - 3617740 - g 72 -8.4 -4.09685 | overlap 3617723 3617741 GGCGATTTTCGAAAA CGCCGTCGAGGGCA TCTATCAATC CACCCCCGACGGCA CCTATCTCGATGTCA TERM 3998 3618799 - 3618815 + G 70 -3.6 -4.47551 | overlap 3618801 GTCGGAGCCCTTTCC CATCGG CGGCA CCGAGG TTTTCTGCATTCCCT Rru_A3137 3617225 - 3619792 + | diguanylate cyclase/phosphodiesterase Rru_A3138 3621070 - 3619811 - | hypothetical protein TERM 3999 3620258 - 3620228 - G 72 -14.7 -2.73364 | GGCCGAGGTGAACCA GCCGCCGCGCAAG CTGGC CTCGCGCGACAGC GGCCTTGGGCCCTCC Rru_A3139 3622108 - 3621254 - | GntR family transcriptional regulator TERM 4000 3621363 - 3621325 - G 79 -16.7 -3.01924 | gap 1, opp_overlap 3621322 3621319 CATGGGCGCGCAACA GCGCGCCCAGCGCCTCGG CCGC CCG-GGCGCTGAGCAGGC GGATGATCTCCTCGT TERM 4001 3622204 - 3622191 - H 89 -5.2 -5.28826 | AAACCCCATAAAAAA GCCG GATATT CGGC AGGAGGAAACCACAA Rru_A3140 3622458 - 3623816 + | gluconate transporter Rru_A3141 3623848 - 3625215 + | homoserine dehydrogenase, NAD-binding Rru_A3142 3625313 - 3626581 + | Type III effector Hrp-dependent outers Rru_A3143 3626603 - 3627232 + | putative aldolase Rru_A3144 3628611 - 3627241 - | sulfite reductase TERM 4002 3628857 - 3628840 - H 70 -10.5 -3.55071 | CCAGATCCGGCGAAA CGGGCAG CGGC CCGCCCG CCCCCTGGGCGCACA TERM 4003 3629177 - 3629188 + G 89 -2.2 -5.37593 | GATAATAGTTGGTCT CGTT AAAA AGCG TTTTTTCCTTTCGCC mdoD 3629170 - 3630933 + | glucan biosynthesis protein D TERM 4004 3630931 - 3630977 + T 100 -19.7 -3.53811 | gap 2, opp_overlap 3630937 3630939 3630940, overlap 3630934 3630939 3630940 CAGTACCATCCGTTT TAAGAACAGCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C-GATCTTA TTTCGCCAGGATCGA TERM 4005 3630934 - 3630974 + T 100 -17 -3.90922 | gap 2, opp_overlap 3630937 3630939 3630940, overlap 3630931 3630939 3630940 TACCATCCGTTTTAA GAACAGCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C-GATC TTATTTCGCCAGGAT TERM 4006 3630971 - 3630937 - T 100 -17.3 -3.61715 | gap 2, opp_overlap 3630934 3630931 3630939 3630940, overlap 3630939 3630940 CATCCGTTTTAAGAA CAGCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C-G ATCTTATTTCGCCAG TERM 4007 3630939 - 3630972 + T 100 -17.5 -3.54488 | gap 1, opp_overlap 3630937 3630939 3630940, overlap 3630934 3630931 3630940 TCCGTTTTAAGAACA GC-GCCTTGGGGAGCG TGA CGCTCCCCAAGGCCGA TCTTATTTCGCCAGG TERM 4008 3630970 - 3630939 - T 100 -21 -3.38812 | gap 1, opp_overlap 3630939 3630934 3630931 3630940, overlap 3630937 3630940 TCCGTTTTAAGAACA GCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C GATCTTATTTCGCCA TERM 4009 3630940 - 3630971 + T 100 -21 -2.72371 | gap 1, opp_overlap 3630939 3630937 3630940, overlap 3630939 3630934 3630931 CCGTTTTAAGAACAG C-GCCTTGGGGAGCG TGA CGCTCCCCAAGGCCG ATCTTATTTCGCCAG TERM 4010 3630970 - 3630940 - T 100 -21.2 -2.63073 | opp_overlap 3630940 3630939 3630934 3630931, overlap 3630939 3630937 CCGTTTTAAGAACAG CGCCTTGGGGAGCG TGA CGCTCCCCAAGGCC GATCTTATTTCGCCA Rru_A3146 3631454 - 3630975 - | hypothetical protein Rru_A3147 3632269 - 3631505 - | hypothetical protein TERM 4011 3631720 - 3631730 + g 71 -3.2 -4.62069 | overlap 3631699 GATTGCGCTTGGCGC GATC CTC GGTC TTTTTGGCCTGGACG TERM 4012 3631744 - 3631760 + g 77 -5.1 -4.64598 | TCTTTTTGGCCTGGA CGGCA TTGATCT TGCCG TTTTTGAAGTCCTTG TERM 4013 3631957 - 3631994 + g 77 -12.5 -3.65046 | opp_overlap 3631956 GACCACCGACCAGAC CGCCGCCGACCGCGCCG ACCC CGGCGTAGATCGCGGCG TTCTTGGCATCGCCG Rru_A3148 3633952 - 3632405 - | hypothetical protein TERM 4014 3632518 - 3632483 - G 73 -6.2 -4.4009 | gap 1, overlap 3632495 3632515 CTTCAGGTCAGAAAA GACATGATCAAC-CCGA CCC TCGGCGTCAAGCATGCC CTGGGCGTGAAGGTC TERM 4015 3633773 - 3633745 - G 72 -8.8 -4.09685 | overlap 3633746 TCTGATCGGCGAAAA CCGCCCCGCC CGGCACATC GACGGGGCGA AAGACCATGGTGCCG Rru_A3149 3635174 - 3633942 - | hypothetical protein TERM 4016 3634492 - 3634519 + g 89 -9.8 -4.56597 | gap 1, opp_overlap 3634492 3634483 3634493, overlap 3634493 3634494 CGGAAATCGGGATAA TGGGCAC-GCGGC TTG GCCGCCGTGCCGG TTTTTCCCAACAAGG TERM 4017 3634494 - 3634517 + g 71 -14.6 -2.60032 | gap 1, opp_overlap 3634493 3634492 3634483, overlap 3634493 3634492 GAAATCGGGATAATG GGCAC-GCGGC TTG GCCGCCGTGCC GGTTTTTCCCAACAA Rru_A3150 3635893 - 3635171 - | ABC transporter component TERM 4018 3635489 - 3635455 - G 73 -11.2 -3.64703 | opp_overlap 3635459 GCTCGCCCACCGAAA CGTCGCGGGGCAGCCG TCG CGCCAGCCCGGCGATG CCCAGCTTTTCCATC TERM 4019 3635459 - 3635495 + g 70 -6.4 -4.1899 | gap 1, opp_overlap 3635455 GCCCACCGAAACGTC GCGGGGCAGCCGTCGCG CCAG CCCGGCGA-TGCCCAGC TTTTCCATCAGATGG Rru_A3151 3637894 - 3635897 - | serine/threonine protein kinase Rru_A3152 3638922 - 3637891 - | hypothetical protein TERM 4020 3638207 - 3638256 + g 82 -16.3 -3.34013 | gap 1, opp_overlap 3638179 3638221 GCTCCATCGGCGACC CCCGCCGC-GTCAAAGCGCTTGGC CTC GCCCAGGGCATCGGCGGCGGCGGG TTGCTTGCGCAGATA TERM 4021 3638497 - 3638526 + g 70 -8.5 -3.90744 | gap 1, opp_overlap 3638493 GTCATCAATCACCGG GGCCTCGGGCGTCG GCT CGACGAC-GGGGTC TTCTTTGGCGGGGGC Rru_A3153 3641653 - 3638948 - | virulence factor protein Rru_A3154 3644638 - 3641657 - | hypothetical protein TERM 4022 3641915 - 3641902 - G 70 -5.9 -4.21631 | AATCGATGGAATAAA GCCGG GTTC CCGAC CACCAATCGACGGCG TERM 4023 3644596 - 3644573 - G 74 -7.4 -4.29106 | gap 1 GCCCAGATCAAGAAA CTGAATGCCGC TGC GCGGCGT-CAG CCAGACGACCGGGGG Rru_A3155 3646263 - 3644722 - | hypothetical protein Rru_A3156 3648049 - 3646322 - | von Willebrand factor, type A TERM 4024 3646973 - 3646989 + g 78 -15.1 -3.32294 | overlap 3646984 GGGCGCGACCTTGGC CGGCGGC TTG GCCGCCG TTATCGGCGGTTTGG TERM 4025 3646984 - 3646999 + g 75 -11.8 -3.6715 | overlap 3646973 TGGCCGGCGGCTTGG CCGCCG TTAT CGGCGG TTTGGGCTTGGCTGG TERM 4026 3647563 - 3647526 - G 70 -12 -3.36515 | overlap 3647524 3647560 3647561 GCGGATCCCGAAACA GCGCTC-GCGGCGGCGGC CCGC GCCG-CGCCGGAAAGCGC GCCCACCGCACCGGC TERM 4027 3648278 - 3648258 - g 83 -9.6 -4.42639 | opp_overlap 3648246 3648244, overlap 3648247 ACATCCGAAGGAAAA CGGCGCCG TTCTC CGGCGGCG TCTGCCCTGTGGATC TERM 4028 3648552 - 3648526 - g 71 -9.3 -3.82097 | opp_overlap 3648549, overlap 3648518 3648521 CCCAAATCGACGAAA GCCGCCTGCGC CTTTT GCGCCAGCAGC GCGGCGACGCCCTGT TERM 4029 3648807 - 3648761 - g 85 -13.8 -4.08216 | CGATCGGCTGGAAAA GGCC-TCGGTCATCGTCCTTGG CCTGC CCAAGGGCGAGG-CCGACGGCC TGATGACCGGCACCG TERM 4030 3649380 - 3649370 - g 95 -4.6 -5.40072 | opp_overlap 3649377 3649378 CTTCCTGCAAAAAAA GGGC ATC ACCC CGGCCCTCGACAGCC TERM 4031 3649377 - 3649430 + G 80 -9.5 -4.25283 | gap 2, opp_overlap 3649370, overlap 3649378 CAAAAAAAGGGCATC AC-CCCGGCCCTCGA-CAGCCGCGC CTGTCA GCCCGGCTGATCGACGGCCCGGAGC TTTTCCTCAGGCGAT TERM 4032 3649378 - 3649429 + G 72 -13 -3.14848 | gap 2, opp_overlap 3649370, overlap 3649377 AAAAAAAGGGCATCA C-CCCGGCCCTCGA-CAGCCGCGC CTGTCA GCCCGGCTGATCGACGGCCCGGAG CTTTTCCTCAGGCGA Rru_A3157 3648198 - 3649415 + | hypothetical protein Rru_A3158 3649598 - 3650047 + | hypothetical protein TERM 4033 3650090 - 3650064 - T 100 -17.2 -4.92757 | CCATCAATAACAAAA CGGGCGCCAGCC TTA AGCGGGCGCCCG TCGGTGATCCAAGCG Rru_A3159 3651400 - 3650114 - | general substrate transporter TERM 4034 3651260 - 3651227 - G 79 -2.2 -5.04987 | overlap 3651229 3651230 AAGATGGCCAAAAAA CACCGCGCCAAGCG GCCGAG CGCCCATCGCCGCG CCGAACACCGCGAAA TERM 4035 3651422 - 3651437 + H 74 -11.8 -3.55444 | GCGCGACCGTGGATT GGCCGG AACG CCGGCC TTTGACGGCTCAAGG TERM 4036 3651667 - 3651710 + H 73 -5.2 -4.68994 | gap 1, overlap 3651668 GAACGCGGGGCCGAT CGCCCTGATGGCAACGCTGAT ACC ATTAGCGCCGCCA-CACGGCC TTTTTCGGTAATAAT TERM 4037 3651886 - 3651868 - H 82 -8.8 -4.37886 | overlap 3651869 3651873 CCACGCCTTAGAAAA CCTAAGCC CCA GGCTTCGG GAAAGGCGTTTGCCA TERM 4038 3652289 - 3652305 + G 85 -7.9 -4.82901 | opp_overlap 3652286, overlap 3652287 3652296 3652298 TGTCCTACACCACCG CGGCGCG CAG CGTGCTG TTTTTGTACACCGCG TERM 4039 3652296 - 3652323 + G 75 -3.3 -4.72986 | opp_overlap 3652286, overlap 3652287 3652289 3652298 CACCACCGCGGCGCG CAGCGTGCTGT TTTTGT ACACCGCGCCG TTTTTCGTCGCCCTC Rru_A3160 3651997 - 3652905 + | hypothetical protein Rru_A3161 3653791 - 3652931 - | hypothetical protein TERM 4040 3653445 - 3653409 - G 70 -10.8 -3.53012 | gap 2 GTGGCGGCGGGCAAA TCGGCGCCACGGATCGCC ACC GGCGG-CCG-GGCGGCGA ACGGCTCGGCCAGCC TERM 4041 3653780 - 3653752 - G 70 -5.9 -4.2803 | gap 1, opp_overlap 3653757, overlap 3653739 3653753 GACCGCAAGCCAAAA TCGCGGC-GGCG GCCTTG CGCCAGCCACGG CGCCCGCTCATTCCG Rru_A3162 3654654 - 3653788 - | prephenate dehydratase Rru_A3163 3655505 - 3654705 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 4042 3655566 - 3655540 - H 78 -2.2 -5.0538 | opp_overlap 3655547, overlap 3655542 3655544 3655545 3655547 CGCCAGTTCAAAAAA CACACGATCGAC TCT ATCGATCTTAGG AACCGCAATTTTCCT TERM 4043 3655796 - 3655820 + G 79 -7.2 -4.60889 | gap 2, overlap 3655794 GCCGGCGGGCGATGC GGCG-C-GCCAA GCT TTGGCCGACGCC TTTTTGACGGTCGTT TERM 4044 3655992 - 3656015 + G 72 -5.1 -4.42062 | overlap 3655955 GTGCTGGCCTTGGGT GTCGCCGCC GGCCTG GGCGGAGCC TTTCTTTCCCACCTC Rru_A3164 3655665 - 3656663 + | hypothetical protein Rru_A3165 3656736 - 3657527 + | histidinol-phosphate phosphatase, putative, inositol monophosphatase Rru_A3166 3657615 - 3659462 + | extracellular solute-binding protein Rru_A3167 3659493 - 3660596 + | binding-protein dependent transport system inner membrane protein TERM 4045 3661156 - 3661176 + G 81 -8.9 -4.51174 | overlap 3661145 3661144 3661150 3661157 AACGCGTCCTGGAGA TCTGGGGCG GTT TGCCCCAGC TTTTCGTTCTGATCA TERM 4046 3661157 - 3661175 + G 71 -12.4 -3.29981 | overlap 3661145 3661144 3661156 3661150 ACGCGTCCTGGAGAT CTGGGGCG GTT TGCCCCAG CTTTTCGTTCTGATC Rru_A3168 3660603 - 3661643 + | binding-protein dependent transport system inner membrane protein Rru_A3169 3661640 - 3663301 + | ABC transporter component Rru_A3170 3663394 - 3663675 + | surface presentation of antigens (SPOA) protein TERM 4047 3663799 - 3663816 + T 76 -10.5 -3.77464 | ACGCCTTCTTGGCGT CCTGGGC ATTG GCCCGGG TTTCGTCGATGATCT Rru_A3171 3664111 - 3663776 - | hypothetical protein Rru_A3172 3664819 - 3664184 - | lysine exporter protein LysE/YggA Rru_A3173 3665457 - 3664816 - | TetR family transcriptional regulator TERM 4048 3665757 - 3665771 + G 79 -11.4 -3.85698 | overlap 3665744 CCTCGCTGACTTTGA CGGCGA TCT TCGCCG TTTATGCCGGGGCCC TERM 4049 3666211 - 3666241 + G 86 -8.9 -4.77036 | gap 1, overlap 3666209 CTCGCTGAAGCCCTC GGTCGGCC-TGCCG CGGG CGGCTCGGCGGACC TTTTTGCTGGTCGCC Rru_A3174 3665615 - 3666853 + | major facilitator transporter gatB 3668276 - 3666819 - | aspartyl/glutamyl-tRNA amidotransferase subunit B Rru_A3176 3669778 - 3668276 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A Rru_A3177 3670074 - 3669787 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C Rru_A3178 3670243 - 3670728 + | Holliday junction resolvase YqgF Rru_A3179 3671351 - 3670725 - | GCN5-related N-acetyltransferase TERM 4050 3671077 - 3671088 + g 72 -5.8 -4.30576 | AGAACATAGCCGACA TCGC CCTG GCGA TTTTCCTCGTCGCGC TERM 4051 3671306 - 3671266 - G 71 -9 -3.76759 | gap 1 AGGAAGCGGATGAAA TCGGGCGCGGTGG-CAT AGGCGATG ATGGCCGCCGCGTCCGA GAATCGGAACGGCCT Rru_A3180 3671580 - 3672764 + | metal dependent phosphohydrolase Rru_A3181 3673134 - 3672793 - | hypothetical protein TERM 4052 3673083 - 3673071 - G 75 -4.7 -4.64766 | opp_overlap 3673071 3673072, overlap 3673072 TCCATAGCGTAAAAA GGGCG ATC CGCCA TTTCCCCCTGGCCTT TERM 4053 3673366 - 3673389 + G 70 -8.2 -3.91897 | CGGATTTTTGTTGCG CCGTTGGAAA GTCC TTTCCGATGG TTTCTGGCTACCGGC Rru_A3182 3673301 - 3674227 + | auxin efflux carrier Rru_A3183 3674718 - 3674230 - | diheme cytochrome c TERM 4054 3674787 - 3674748 - R 70 -3.4 -4.72272 | gap 1, opp_overlap 3674750, overlap 3674749 3674750 TCTCTCGATCAAAAA GCGGGCGTA-ATCGCCCTG TTC CAGGGCGGTGCAAGCGCGG CCGAGAACGGCCTTG Rru_A3184 3675626 - 3674730 - | hypothetical protein TERM 4055 3675036 - 3675012 - G 70 -9.9 -3.72576 | overlap 3674987 GCGCCGGCTATCAAA GCCGGCAAAGG CCC CCTCCGCCGCC CGCGCCCGCTCGGCA TERM 4056 3675116 - 3675065 - G 89 -17.8 -3.32268 | overlap 3675056 3675066 CAAGCACGGCCAGAA CCGCGTCTTGGGGCGGGCCGGCCC AGGC GGGCCGGCTTGCCGCCAGACCCGA TGCCAAACCCGTCGC TERM 4057 3675115 - 3675066 - G 87 -19.1 -2.59039 | overlap 3675056 3675065 AAGCACGGCCAGAAC CGCGTCTTGGGGCGGGCCGGCCC AGGC GGGCCGGCTTGCCGCCAGACCCG ATGCCAAACCCGTCG Rru_A3185 3675934 - 3675623 - | hypothetical protein Rru_A3186 3676053 - 3676460 + | hypothetical protein TERM 4058 3676652 - 3676692 + G 72 -13.9 -3.01712 | overlap 3676655 CGGCATCGGCGTGCT GCGGCGCTGGCGCGCCG CCGGCAT CGGCGTGCCGGTGCTGA TCTTGACGGCGCGCG TERM 4059 3676655 - 3676689 + G 77 -16.4 -2.73875 | overlap 3676652 CATCGGCGTGCTGCG GCGCTGGCGCGCCG CCGGCAT CGGCGTGCCGGTGC TGATCTTGACGGCGC Rru_A3187 3676464 - 3677153 + | two component transcriptional regulator TERM 4060 3677175 - 3677197 + F 86 -14.1 -3.50853 | CGCGCTCGCTGCGCC GCCGCCTGC TGGTC GCGGGCGGC TTGTGGTTGGCCGGC TERM 4061 3678204 - 3678159 - g 74 -15.3 -2.62184 | opp_overlap 3678167 3678170 GGCCGCTCGACATCA CCATCGACGGCGCCGAGGACG CGGC CTTTCCCGGCGCCGGCGACGA CCTGCTCGAGATCCT Rru_A3188 3677198 - 3678568 + | histidine kinase TERM 4062 3678715 - 3678703 - g 71 -3.3 -4.62069 | CCGCGATGTCAAAAA GAGCC CTT GGATC GGCCGCCCTTGTTAC Rru_A3189 3678675 - 3679205 + | hypothetical protein TERM 4063 3679238 - 3679260 + F 100 -16.3 -4.4078 | opp_overlap 3679233 3679232 GTCAAAAGACCTTGG CGACGGCCC CTTGC GGGCCGTCG TTTTGATTGCCCGCG Rru_A3190 3679306 - 3680265 + | aspartate carbamoyltransferase Rru_A3191 3680265 - 3681563 + | dihydroorotase Rru_A3192 3681556 - 3682206 + | acyl-phosphate glycerol-3-phosphate acyltransferase Rru_A3193 3682303 - 3682971 + | glutathione S-transferase-like protein TERM 4064 3683820 - 3683792 - g 70 -10.2 -3.71848 | opp_overlap 3683791, overlap 3683813 CGGCCTGATCAAGAA CGGCGCCGCCCT GATCG AAGACGCCGCCG ATGTGCTGCGCATCC Rru_A3194 3682974 - 3684098 + | SMF protein TERM 4065 3684250 - 3684229 - g 79 -12.9 -3.66178 | CCGCCGAATTGGAAA CGCGCCTGG AGGC CCTGGCGCG CGCCACCGGCCGAAC Rru_A3195 3684195 - 3684419 + | helix-turn-helix protein, CopG Rru_A3196 3684403 - 3684672 + | plasmid stabilization system protein Rru_A3197 3685028 - 3684708 - | HicB TERM 4066 3684766 - 3684782 + g 100 -13.7 -4.55118 | CTAAGCCCTTCACGC GCGGCGA CCA TCGCCGC TTTTCTGTGCAATTC Rru_A3198 3685364 - 3685083 - | HicA protein Rru_A3199 3685617 - 3686633 + | extracellular solute-binding protein TERM 4067 3686802 - 3686852 + G 83 -12.5 -4.14243 | gap 2 GCCGACACCGGCGGC GGCTGGCAGATGGTCGTCCGGGTGC TCG GCGCCCGGGCGACGA-CCACC-GCC TTTTGGAATACCCTG TERM 4068 3687281 - 3687299 + G 75 -13.8 -3.2614 | GCGCCCGGCGCTGCT GGCCGGGG CGG CCCTGGCC TTCGTCTCGGCGATC Rru_A3200 3686649 - 3688373 + | binding-protein dependent transport system inner membrane protein Rru_A3201 3688361 - 3689440 + | ABC transporter component TERM 4069 3689549 - 3689568 + F 81 -4.8 -5.00616 | overlap 3689554 CGTCCAAGGGGTCCA GGCCCCGG CTAG CCGCCGCC TTTTTTAGGCACCCA TERM 4070 3689913 - 3689903 - g 72 -8.2 -4.08216 | opp_overlap 3689903 CGATGTTTTGGAAAA GCGC AAG GCGC TGGTTGGCAAGCAGG TERM 4071 3691580 - 3691551 - g 87 -17.1 -3.39895 | CTGGTCACCAAGGAA GGCGAAGGCGGCG ACGG CGCCGCCCTGGCC GAGGATGGCACCAAG TERM 4072 3692227 - 3692217 - g 79 -2.4 -5.00616 | overlap 3692218 GCTCCGGTCAAAAAA GCGG CGG CCGA GAAAAAGGCGCCGGC TERM 4073 3692254 - 3692234 - g 74 -2.3 -4.82901 | overlap 3692218 3692236 3692248 GGCGGCCGAGAAAAA GGCGCCGGC GAA GACCGCGAC CAAGAAAGCCGCGCC TERM 4074 3692318 - 3692276 - g 84 -9.6 -4.56775 | overlap 3692262 3692277 AGCCGCGCCGAAAAA GGCCGCCGACTCGGCCGAAG ACG CCCCGGCCAAGGCGCCGCGC AAGAGCAAGGCCAAA TERM 4075 3692318 - 3692277 - g 73 -12.9 -3.33744 | gap 1, overlap 3692262 3692276 GCCGCGCCGAAAAAG GC-CGCCGACTCGGCCGAAG ACG CCCCGGCCAAGGCGCCGCGC AAGAGCAAGGCCAAA Rru_A3202 3689610 - 3692357 + | DNA topoisomerase I TERM 4076 3692410 - 3692452 + G 84 -9.7 -4.56597 | gap 1, overlap 3692409 CTGGCTCCTCTCTGG CATGATGG-CGCGGACCCCG GGAA CGGGATCCGCGCCCGCCGCG TTTTTCCCCAAGACA TERM 4077 3694754 - 3694733 - g 74 -5.1 -4.56597 | gap 1, overlap 3694734 GCTTCTCTGGAAAAA CCAAAGGTCG CGA CGGCCTT-GG CAAGACCCGCTTGAA TERM 4078 3694836 - 3694801 - g 70 -6.6 -4.20918 | gap 1, overlap 3694802 GCGAAGCTCAAGAAA GGGGCGCGCGGCAAGCC CAA GGCG-GCCGGGCGCGAC GCCTTGGCCGGCGAG Rru_A3203 3692386 - 3694914 + | RNAse R TERM 4079 3696576 - 3696531 - g 86 -16.2 -3.58343 | overlap 3696532 3696561 3696565 GCGACCAGTCGGAAA TCGCCGCGCATGTCGCCTTG TGGCGC CAAACCGACATGCGCGACGC CAGCCGCCGTCTGGC TERM 4080 3696575 - 3696532 - g 93 -19.7 -2.74792 | overlap 3696531 3696561 3696565 CGACCAGTCGGAAAT CGCCGCGCATGTCGCCTTG TGGCGC CAAACCGACATGCGCGACG CCAGCCGCCGTCTGG Rru_A3204 3695033 - 3696733 + | C-terminal processing peptidase Rru_A3205 3696846 - 3697013 + | 50S ribosomal protein L33P TERM 4081 3697124 - 3697180 + T 100 -19.1 -3.53012 | gap 2, opp_overlap 3697141, overlap 3697126 3697141 CGATGGCGTGGGGAT GCCCGACAAAACAAAAAGGCCGCTCCC GGCAA GGGA-CGGCCTTTTTGTTT-GTTCGGC TTTCAGAGAGGCGGC TERM 4082 3697126 - 3697179 + T 95 -20.6 -2.71712 | gap 1, opp_overlap 3697141, overlap 3697124 3697141 ATGGCGTGGGGATGC CCGACAAAACAAAAAGGCCGCTCCC GGCAA GGGA-CGGCCTTTTTGTTTGTTCGG CTTTCAGAGAGGCGG TERM 4083 3697141 - 3697164 + T 100 -10.3 -5.47159 | gap 1, opp_overlap 3697141, overlap 3697126 3697124 CCGACAAAACAAAAA GGCCGCTCCC GGCAA GGGA-CGGCC TTTTTGTTTGTTCGG TERM 4084 3697164 - 3697141 - T 100 -10.3 -5.54907 | gap 1, opp_overlap 3697126 3697124 3697141 CCGACAAAACAAAAA GGCCGCTCCC GGCAA GGGA-CGGCC TTTTTGTTTGTTCGG Rru_A3206 3697587 - 3697207 - | response regulator receiver protein TERM 4085 3697282 - 3697295 + g 70 -3.7 -4.4891 | opp_overlap 3697273, overlap 3697283 GACATAGCCGTCACA GCCGC CCTC GCGGA TTTTCTCCTCGTCCC TERM 4086 3697443 - 3697477 + g 75 -14.2 -3.32498 | overlap 3697444 3697446 TCAGATCGGGTCGAT GGGCGCGCGCGAGGTC AAC GACCTTGCGCCCGTCA TTAGTCTGTACGGTA TERM 4087 3697444 - 3697476 + g 85 -17.7 -2.59177 | overlap 3697443 3697446 CAGATCGGGTCGATG GGCGCGCGCGAGGTC AAC GACCTTGCGCCCGTC ATTAGTCTGTACGGT TERM 4088 3697446 - 3697474 + g 79 -16.7 -2.83345 | overlap 3697444 3697443 GATCGGGTCGATGGG CGCGCGCGAGGTC AAC GACCTTGCGCCCG TCATTAGTCTGTACG Rru_A3207 3698059 - 3697676 - | hypothetical protein TERM 4089 3698051 - 3698018 - G 82 -4.3 -4.87665 | overlap 3698041 GGCGATGGACAAAAA GGCGTTGAGGCCGGC CAAA GCCAGCCAGGACCCC CAGCGCATGAAGGAT TERM 4090 3698186 - 3698162 - R 100 -13.5 -4.8048 | overlap 3698163 GCGGCACACGAAAAA GGGCGGTGCCC AAG GGACACCGCCA AAGTACGCGCTCTTG TERM 4091 3698185 - 3698163 - R 100 -17 -3.47806 | overlap 3698162 CGGCACACGAAAAAG GGCGGTGCCC AAG GGACACCGCC AAAGTACGCGCTCTT Rru_A3208 3699534 - 3699043 - | hypothetical protein Rru_A3209 3699820 - 3700476 + | ribonuclease H TERM 4092 3700527 - 3700538 + F 71 -7.2 -4.18693 | opp_overlap 3700486, overlap 3700509 CGGACACCACATCCT GGGC TCCG GCCC TTTGGTTTGTCGTTT TERM 4093 3701474 - 3701500 + G 77 -12.2 -3.66178 | GCACCGTGGTCGAAC GCGGCCTGCTCG CCC CGGGCAGCCTGC TTTGCGATTCCCAGC Rru_A3210 3700630 - 3701733 + | DNA methylase N-4/N-6 TERM 4094 3701730 - 3701772 + T 72 -13.6 -2.64144 | gap 1, overlap 3701727 3701736 GGAAGCCTGCGCCCT TTAGCGCGGGG-GCGTGAA ACCCGC TTCACGCTCCCCGTTCTAA GTCTTTGGCTGCGCC TERM 4095 3701736 - 3701766 + T 86 -13.4 -3.452 | gap 1, overlap 3701730 3701727 CTGCGCCCTTTAGCG CGGGG-GCGTGAA ACCCGC TTCACGCTCCCCG TTCTAAGTCTTTGGC Rru_A3211 3702299 - 3701769 - | hemerythrin HHE cation binding region Rru_A3212 3703130 - 3702360 - | hypothetical protein TERM 4096 3703217 - 3703230 + H 78 -2.3 -5.05606 | overlap 3703208 TTCGCTTGGGTATAC CCATC CTTG GTTGG TTTCTTTTTCTTAAA TERM 4097 3703571 - 3703547 - g 72 -11.4 -3.56836 | AAAGGATGGTCGAAA TCCTGCGCGA TTTGG TCGCGCCGGA CACCGGGGAGGAGAA TERM 4098 3704293 - 3704305 + G 70 -6.2 -4.16943 | opp_overlap 3704268 GAATCGTTCAATCCC GCCG CCGAA CGGC TTTTCGGCTATCGGG Rru_A3213 3703369 - 3705705 + | PAS/PAC sensor Signal transduction histidine kinase Rru_A3214 3706985 - 3705744 - | O-succinylhomoserine sulfhydrylase TERM 4099 3706857 - 3706845 - G 73 -9.1 -3.97368 | opp_overlap 3706845 3706844 GCCGGAATTGAGAAA CAGCG CTT CGCTG GTTTCATTCAAACCA TERM 4100 3707038 - 3707022 - H 100 -5.8 -5.79595 | gap 1, opp_overlap 3707022 3707022, overlap 3707023 GTCCAAAAGAAAAAA GCC-CGG CGAT CCGAGGC CGGGACTTTCGTCAC TERM 4101 3707042 - 3707023 - H 71 -7.8 -4.0613 | opp_overlap 3707022 3707022, overlap 3707022 TCCAAAAGAAAAAAG CCCGGC GATCCGAG GCCGGG ACTTTCGTCACACGA TERM 4102 3707365 - 3707349 - H 75 -2.9 -4.89339 | AAGGATCGATAAAAA TCCTGGT CGA ACCGAGA CTAAAGCGTATACCG TERM 4103 3707423 - 3707398 - H 74 -11.1 -3.53091 | overlap 3707401 ACCCCGCGGTTCAAA GACCCGTCGCC TTGG GGCGACGATTC GGAACGGAAAGACCC Rru_A3215 3707518 - 3707919 + | hypothetical protein TERM 4104 3708473 - 3708417 - g 78 -15 -3.28712 | overlap 3708421 CCTTGCCGGCGACAA CGGAGCGC-GGCGAGCGCGCCGGCCG TGGCGAG CGGGGGGCGCGC-CGCCCGCGCAGCG AACGCCTGCGGCGCA TERM 4105 3708469 - 3708421 - g 80 -17.4 -2.59431 | overlap 3708417 GCCGGCGACAACGGA GCGC-GGCGAGCGCGCCGGCCG TGGCGAG CGGGGGGCGCGC-CGCCCGCGC AGCGAACGCCTGCGG TERM 4106 3709282 - 3709267 - g 70 -11.8 -3.41051 | CTATGGCGATCAGAA CCGGGC TCTG GCCCGG GCCAGCGAACAATTG TERM 4107 3710215 - 3710203 - g 75 -9.1 -4.11484 | overlap 3710205 GCTAACCGTCGAAAA GACGC TGA GCGTC GCCGCCGAGAAGTTC Rru_A3216 3708101 - 3711400 + | hypothetical protein Rru_A3217 3711495 - 3711995 + | hypothetical protein TERM 4108 3712037 - 3712027 - f 79 -8.2 -4.56597 | opp_overlap 3712033 3712034, overlap 3712012 3712011 3712028 3712029 CGCTTCTCCCAAAAA GCGC CAA GCGC CGCGCGCTTTCGCCC Rru_A3218 3712278 - 3712589 + | hypothetical protein TERM 4109 3712691 - 3712654 - f 83 -17 -2.62983 | overlap 3712656 GCTATCCCTAGAGGA GAGCGGCGCGCCTGAA GCGAAT TTCGGGCACGCCGCCC TAACCCTATCCCCGC TERM 4110 3712689 - 3712656 - f 81 -16 -2.85668 | overlap 3712654 TATCCCTAGAGGAGA GCGGCGCGCCTGAA GCGAAT TTCGGGCACGCCGC CCTAACCCTATCCCC TERM 4111 3713593 - 3713619 + G 72 -11.5 -3.55444 | gap 1, opp_overlap 3713593, overlap 3713595 AGCCCCGGTGGCAAA GCCTGCCCGCCG TGCG CGCCGGGC-GGC TTTACAAGGTGCCCG TERM 4112 3713619 - 3713593 - g 72 -11.5 -3.53091 | gap 1, opp_overlap 3713593 3713595 AGCCCCGGTGGCAAA GCCTGCCCGCCG TGCG CGCCGGGC-GGC TTTACAAGGTGCCCG Rru_A3219 3712764 - 3713828 + | twin-arginine translocation pathway signal TERM 4113 3713844 - 3713822 - T 87 -17 -3.01712 | CCTGGCCGGCGAAGA CCGGTAGGGG AAG CCCCCACCGG CCTTGGGCAAGCGTC Rru_A3220 3715822 - 3713858 - | TonB-dependent receptor TERM 4114 3715882 - 3715865 - R 91 -14.1 -3.86524 | ATAGCGCTGGATAAA CGGCCCC GTCG GGGGCCG CGAGTCTGGGGGGGG Rru_A3221 3716499 - 3715972 - | hypothetical protein TERM 4115 3717089 - 3717128 + G 100 -20 -4.2679 | gap 1 TCGCCCGATCTGCTG GGCGCGGCGGCGGGGGC TGGGTGC GCCGCCGCCGCCG-GCC TTTTGCTGGGGCTTG TERM 4116 3717242 - 3717218 - g 70 -11.3 -3.57144 | opp_overlap 3717217 3717227 TGCTTGATCGCCAAA GGCCGTGGCGG TGC CGGCGACGGCC CCTTGATGATGGTGT Rru_A3222 3716735 - 3717811 + | transport system permease protein TERM 4117 3718477 - 3718509 + G 85 -15.6 -3.67597 | gap 1 GATGGCCGGCTGGCC GTCGGCGCTC-CCAC CGAG GTGGTGAGCGCCGCC TTCTTGCGTGAGACC Rru_A3223 3717808 - 3718632 + | ABC transporter component Rru_A3224 3719305 - 3718643 - | hypothetical protein Rru_A3225 3719753 - 3719367 - | hypothetical protein Rru_A3226 3720859 - 3720086 - | enoyl-(acyl carrier protein) reductase TERM 4118 3720904 - 3720887 - R 89 -11.3 -4.24002 | TTGCAAAGTGGAAAA CGGCAAG CCCC CTTGCCG CCCACCGTCGGAAAA Rru_A3227 3721901 - 3721137 - | methyltransferase Rru_A3228 3722711 - 3722247 - | cyclase/dehydrase TERM 4119 3722771 - 3722754 - R 95 -11.3 -4.43911 | AAAGGGGAATGAAAA GAACGGG CCCT CCCGTTC CAAGATCTTGATTAG TERM 4120 3722838 - 3722796 - R 80 -11.9 -3.75169 | gap 1, opp_overlap 3722797 3722799, overlap 3722797 3722799 GATTAGGGGAGTAAA TCATCGCCGCCCCCCGGTCG GGAT CG-CCAGGGGGAGGGGATGT AATCTAGCCGGTCAG TERM 4121 3722837 - 3722797 - R 81 -15.4 -2.8478 | gap 1, opp_overlap 3722797 3722799, overlap 3722796 3722799 ATTAGGGGAGTAAAT CATCGCCGCCCCCCGGTCG GGAT CG-CCAGGGGGAGGGGATG TAATCTAGCCGGTCA TERM 4122 3722797 - 3722837 + r 72 -13.2 -2.62616 | gap 1, opp_overlap 3722796 3722797 3722799, overlap 3722799 ATTAGGGGAGTAAAT CATCGCCGCCCCCCGGTCG GGAT CG-CCAGGGGGAGGGGATG TAATCTAGCCGGTCA TERM 4123 3722835 - 3722799 - R 70 -12.2 -2.97171 | gap 1, opp_overlap 3722797 3722799, overlap 3722797 3722796 TAGGGGAGTAAATCA TCGCCGCCCCCCGGTCG GGAT CG-CCAGGGGGAGGGGA TGTAATCTAGCCGGT Rru_A3229 3723516 - 3722842 - | two component LuxR family transcriptional regulator Rru_A3230 3725437 - 3723653 - | diguanylate cyclase/phosphodiesterase TERM 4124 3724000 - 3723986 - G 77 -5.6 -4.59109 | overlap 3723988 CAGAGCGGCGAAAAA GTCGTC GCC GCCGAC ATGACCGATGAAGAA TERM 4125 3724409 - 3724429 + g 72 -6.7 -4.16842 | opp_overlap 3724406 GCGCGTGAGAAAGGC GCTCAGGGT GCG GCCCAGGGC TTTGTTGCCGATCAG TERM 4126 3725219 - 3725201 - G 80 -9.5 -4.21319 | ATCAAGGCCAAGAAA CAGGCGC TGGTC GCGCCCG GCCGATACGGCGGCG Rru_A3231 3726259 - 3725576 - | isoprenoid biosynthesis protein TERM 4127 3725726 - 3725738 + g 73 -6.2 -4.30576 | overlap 3725725 GTCAACAACCACCTC GGCG TGCGT CGCC TTTTGGTGGTGCGCC Rru_A3232 3726337 - 3727875 + | thermostable carboxypeptidase 1 TERM 4128 3729214 - 3729266 + G 72 -8.4 -4.07568 | opp_overlap 3729224 3729228, overlap 3729224 3729234 CAAATTCGCCGATGT GGTTGAACAAGC-CACCGGCCAGCGC CCG GCCCTGCCCGGCGCGCTT-TCCGACC TTTTGACCCGACCCG TERM 4129 3729257 - 3729224 - g 70 -10.9 -3.61715 | gap 1, opp_overlap 3729224 3729214 3729234, overlap 3729228 GATGTGGTTGAACAA GC-CACCGGCCAGCGC CCG GCCCTGCCCGGCGCGC TTTCCGACCTTTTGA Rru_A3233 3727955 - 3729367 + | threonine synthase Rru_A3234 3729364 - 3730629 + | processing peptidase TERM 4130 3730658 - 3730709 + F 100 -15.9 -4.05446 | opp_overlap 3730664 3730665, overlap 3730658 CGCCTGAAGCCGTGA TGGAAAGGCGGGGAGGAAATGGC CCGAGC GCCGTTTCCTCCCCGCTTACCGA TTTGTAATTCCCCGC TERM 4131 3730658 - 3730708 + F 90 -19.2 -3.02946 | gap 1, opp_overlap 3730664 3730665, overlap 3730658 CGCCTGAAGCCGTGA TGGAAAGGCGGGGAGGAAATGGC CCGAGC GCCGTTTCCTCCCCGC-TTACCG ATTTGTAATTCCCCG TERM 4132 3730703 - 3730664 - f 100 -17.9 -3.65199 | opp_overlap 3730658 3730658, overlap 3730665 AAGCCGTGATGGAAA GGCGGGGAGGAAATGGC CCGAGC GCCGTTTCCTCCCCGCT TACCGATTTGTAATT TERM 4133 3730702 - 3730665 - f 100 -21.4 -2.78798 | opp_overlap 3730658 3730658, overlap 3730664 AGCCGTGATGGAAAG GCGGGGAGGAAATGGC CCGAGC GCCGTTTCCTCCCCGC TTACCGATTTGTAAT TERM 4134 3731715 - 3731727 + G 79 -4.8 -4.72272 | opp_overlap 3731717 GCTGATGACCGACAT GACC GCCCA GGTC TTTTTCCTCAAGGAC TERM 4135 3731945 - 3731977 + G 79 -13.3 -3.65199 | overlap 3731946 3731948 GCGCCACCCCGGGCG CCACCGCCGGCGGCT TCA AGCCGCCGCCGATGC TTTAGATCCCACCTT TERM 4136 3731946 - 3731976 + G 80 -16.8 -2.78798 | overlap 3731945 3731948 CGCCACCCCGGGCGC CACCGCCGGCGGCT TCA AGCCGCCGCCGATG CTTTAGATCCCACCT Rru_A3235 3730807 - 3731982 + | secretion protein HlyD TERM 4137 3732759 - 3732708 - g 75 -15.6 -2.78384 | gap 1, opp_overlap 3732750, overlap 3732688 GGGTGGTTGAGGACA GCGGCCGGCCGGCCCCCGTGGGCAG CGA CCGCCCGCTCG-GCCGGCCGCCCGG CGGGGCGGCCTATCT TERM 4138 3732750 - 3732769 + G 79 -16.4 -2.88544 | opp_overlap 3732708 ACCGCCCGCTCGGCC GGCCGCCC GGCG GGGCGGCC TATCTGGGCATGGCC TERM 4139 3733150 - 3733195 + G 70 -3.8 -4.56597 | gap 1, opp_overlap 3733142 3733174 CATCAATGGCACCTG GCCGGCCTATGCGG-CGGCCA AGGAC TGGCCGATGGCCTGGGGCAGC TTTTTCGACGCCACC TERM 4140 3733806 - 3733755 - g 72 -12.9 -3.14878 | gap 2, overlap 3733753 TGCTGCAATTCAACA CCGAGGCCGTCGCCGTCT-G-CGGC GTCG GCGGTCTAGCCGGCGTCGGCCTGGG GCTGGGGGCGGCGCT Rru_A3236 3732023 - 3733975 + | hypothetical protein Rru_A3237 3733988 - 3735373 + | RND efflux system, outer membrane lipoprotein, NodT Rru_A3238 3735599 - 3735357 - | hypothetical protein Rru_A3239 3736048 - 3735758 - | plasmid stabilization system protein Rru_A3240 3736314 - 3736051 - | transcription regulator TERM 4141 3737743 - 3737716 - g 72 -14.2 -3.03124 | gap 1 CCGCAGCGTGCAACA GGTGGCGCAGAGC AGC GCCCT-CGCCACC AAGGGAATGACCACG Rru_A3241 3736556 - 3737893 + | chemotaxis sensory transducer TERM 4142 3737952 - 3737980 + T 70 -10.4 -3.55563 | gap 1, opp_overlap 3737949 3737952 3737979 CTAATCCTCAAAGGA GCT-CATCGCCTT GAGA AGGGCGATGAAGC TTTGGCGCATCCCGT Rru_A3242 3738386 - 3737937 - | XRE family transcriptional regulator TERM 4143 3738016 - 3738034 + g 77 -12.4 -3.64703 | opp_overlap 3738015 3738016 GGCAGCGCCCAAAAG GCCTGGGC CAG GTCCAGGC TTTGGGTCAGGCGCA TERM 4144 3738497 - 3738518 + r 79 -8.7 -4.20368 | opp_overlap 3738497 3738500, overlap 3738500 AAAAATACCGAGAAA CGAGCACTC CGTC GAGTGCTGG TTTATATTCCGATAA TERM 4145 3738518 - 3738497 - R 76 -8.7 -4.02468 | opp_overlap 3738497 3738500, overlap 3738500 AAAAATACCGAGAAA CGAGCACTC CGTC GAGTGCTGG TTTATATTCCGATAA TERM 4146 3738604 - 3738577 - R 100 -14.9 -5.27938 | opp_overlap 3738577 ACCGGCAAATAAAAA CGGGACTCCGC GGTTTG GCGAAGTCCCG TTGGGAAAAGGTTCG TERM 4147 3738736 - 3738693 - R 95 -19.6 -3.27406 | opp_overlap 3738698, overlap 3738698 GCGCGATGATAAAAT CAAAAGCGGCGCGCGGTGAC CAAG GTCTCCACACGCCGCTTTAG CATCTTGATCGGGAA TERM 4148 3738731 - 3738698 - R 100 -18.1 -4.74012 | opp_overlap 3738698, overlap 3738693 ATGATAAAATCAAAA GCGGCGCGCGGTGAC CAAG GTCTCCACACGCCGC TTTAGCATCTTGATC TERM 4149 3738698 - 3738731 + r 88 -13.7 -3.67517 | opp_overlap 3738698 3738693 ATGATAAAATCAAAA GCGGCGCGCGGTGAC CAAG GTCTCCACACGCCGC TTTAGCATCTTGATC Rru_A3243 3739344 - 3738796 - | H+-transporting two-sector ATPase, B/B' subunit Rru_A3244 3739835 - 3739350 - | H+-transporting two-sector ATPase, B/B' subunit Rru_A3245 3740280 - 3740053 - | H+-transporting two-sector ATPase, C subunit TERM 4150 3740351 - 3740379 + r 71 -8.7 -3.7948 | opp_overlap 3740359 CACCGACAGCATTTC GGAAGACAGCGCC GGG GGCGCTATCGGCC TTTAGTGCATGTTGA Rru_A3246 3741106 - 3740381 - | F0F1 ATP synthase subunit A Rru_A3247 3741470 - 3741099 - | hypothetical protein TERM 4151 3741254 - 3741236 - G 70 -6.6 -4.29049 | overlap 3741233 3741237 GAACGAGGAAAACAA CCATCGCC AGC GGCGACGT TCCCAGCCACGAGTC TERM 4152 3741667 - 3741651 - R 79 -8.7 -4.25104 | overlap 3741652 GCGCCCGGAGCAAAA CGCCTGA ATT TCAGGCA GTTAGGCCAAAACGG Rru_A3248 3745172 - 3741669 - | condensin subunit Smc TERM 4153 3742664 - 3742648 - G 73 -10.8 -3.72695 | opp_overlap 3742613 AGGGCCTCGACCAAA GCCGCC TTCTC GGCGGC GATCGCCTCGGGTCG TERM 4154 3743767 - 3743750 - G 75 -14.1 -3.25823 | opp_overlap 3743761 CTTGGGCCAGATCAA CCGCCGC CTGG GCGGCGG TGCGGGCGGCCTCGC TERM 4155 3743761 - 3743785 + g 70 -10.6 -3.55622 | opp_overlap 3743750 TCAACCGCCGCCTGG GCGGCGGTGC GGGCG GCCTCGCCGC TTTCCACCCGTTCCC TERM 4156 3744653 - 3744672 + g 79 -16.4 -3.01712 | GGCGGCGGCTGTACA GGCCGCCG ATGC CGGCGGCC TCTTCCAGCAGGGCC TERM 4157 3744982 - 3744926 - G 81 -8.7 -4.45544 | overlap 3744927 GGTTATCAAGCAAAA GCGTGA-CTTCGGCGACATTGCGCGGC GGACG GCTG-GCGGTGCCGCCGAAGATCACGT CATCCATGTCCTCGC TERM 4158 3744981 - 3744927 - G 71 -12.2 -3.26844 | overlap 3744926 GTTATCAAGCAAAAG CGTGA-CTTCGGCGACATTGCGCGGC GGACG GCTG-GCGGTGCCGCCGAAGATCACG TCATCCATGTCCTCG Rru_A3249 3745837 - 3745184 - | DSBA oxidoreductase TERM 4159 3745880 - 3745846 - R 100 -20.6 -4.08706 | overlap 3745866 3745867 TGGGCACTATATAAA GCCGCGCTCCCGCGCC ACA AGCGCCGGCGCGCGGC CGCCTTGCCGCCCCT TERM 4160 3745925 - 3745867 - R 76 -14.5 -2.57132 | gap 3, overlap 3745846 3745866 CTCCCGCGCCACAAG CGCCGGCGCGCGGCCGCCTTGCCGCCCC TTAGCC GGGACGGC--GCCGGCTGCGC-CCGGCC TCCAGCCGGCCGACG Rru_A3250 3746467 - 3745895 - | hypothetical protein TERM 4161 3746513 - 3746491 - H 78 -13.4 -3.14132 | TCCTTTCGTGATGAA GGGCGGCC TTGACCC GGCCGCCC GCCCCGATGATAGGG TERM 4162 3747096 - 3747084 - g 79 -6.9 -4.62069 | GCCCCAGGGCAAAAA GGCGC TCT ACGCC CGCGCCGCCCAATTG Rru_A3251 3746569 - 3747648 + | A/G-specific DNA-adenine glycosylase TERM 4163 3748029 - 3748039 + T 77 -3.2 -4.88222 | CCACCCTGCGTCTCT GAGC CTC GTTC TTTTTAGGTTTTAGT TERM 4164 3748068 - 3748097 + T 100 -15 -4.4078 | overlap 3748069 GTCATTGCCAAGGTT GGGCCACGCTCC GCAAAG GGAGCGTGGCCG TTTTGGTTGGCGCCC TERM 4165 3748069 - 3748096 + T 90 -18.5 -3.24146 | overlap 3748068 TCATTGCCAAGGTTG GGCCACGCTCC GCAAAG GGAGCGTGGCC GTTTTGGTTGGCGCC Rru_A3252 3749061 - 3748117 - | dTDP-glucose 4,6-dehydratase TERM 4166 3748284 - 3748295 + g 79 -3 -5.00616 | CCGAGGCCGAGCCGG TCAT GGCG ATGA TTTTTTCGGCCAGGG Rru_A3253 3750229 - 3749144 - | hypothetical protein TERM 4167 3749965 - 3749941 - G 89 -10.7 -4.18018 | gap 1 GGGCCGCATCGAAAA CCGG-CGCCG AGGGCG CGGCGGCCGG ACGGGGCGGGTTTGG TERM 4168 3750106 - 3750096 - G 74 -2.4 -4.74103 | overlap 3750101 TCGTCAATGGAAAAA GACG ACG CGGC ACCCTCGGCCTTCGC Rru_A3254 3750400 - 3751176 + | ABC transporter component Rru_A3255 3751173 - 3752069 + | hypothetical protein TERM 4169 3752615 - 3752642 + G 81 -7.6 -4.58395 | TTCCGCGCCGCCATG CCCGATGTGCGG ATCA TCGCCCATCCGG TTTTTCCCGGCTCGG Rru_A3256 3752174 - 3752854 + | hypothetical protein Rru_A3257 3752851 - 3753618 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 4170 3754036 - 3754088 + G 73 -14.9 -2.93723 | gap 3, opp_overlap 3754005 3754004, overlap 3754048 CGATTTCTCGACGCT GCGGCCGCG-CGGCGCCAAGGTCCGG CGCA CCGGATC--GGTGTCGTCGGGGCCGC TGTCGTTCATGGAGA TERM 4171 3755496 - 3755470 - g 73 -12.9 -3.28712 | opp_overlap 3755457, overlap 3755471 CGCCCCGGTCCAGAA GGCGCCGGCGC CGCGC ACCCCGGCGCC GCCGATGCGGCCGGA TERM 4172 3755936 - 3755883 - g 100 -17.9 -3.78775 | overlap 3755884 CCCCCGAGGAGGAAA CCGCCCCGGCCGCGCCATCGGCCGA TGCC TCGGCCCCTGCCTCGGCGGGGGCGC CGATCGGCGACCGCT TERM 4173 3755935 - 3755884 - g 100 -21.4 -2.87051 | overlap 3755883 CCCCGAGGAGGAAAC CGCCCCGGCCGCGCCATCGGCCGA TGCC TCGGCCCCTGCCTCGGCGGGGGCG CCGATCGGCGACCGC Rru_A3258 3753674 - 3756034 + | ribonucleotide reductase large subunit Rru_A3259 3756638 - 3756096 - | ChaC-like protein TERM 4174 3756422 - 3756396 - G 71 -13.7 -2.87132 | GCGCGCCCGCAGATA GGCGACGACCG TCTCG CGGTCGTCGTC GCTCACGCGGAAGGC Rru_A3260 3756719 - 3758002 + | hypothetical protein TERM 4175 3758086 - 3758096 + T 71 -8.2 -4.13767 | opp_overlap 3758086, overlap 3758071 CGGTGACGCGGAAAA CCGG CCC CCGG TTTTCCGCTCGCCAC TERM 4176 3758096 - 3758086 - T 71 -8.2 -4.11216 | opp_overlap 3758071 3758086 CGGTGACGCGGAAAA CCGG CCC CCGG TTTTCCGCTCGCCAC Rru_A3261 3758825 - 3758427 - | hypothetical protein TERM 4177 3758653 - 3758611 - G 77 -13.2 -3.53091 | ATCCGCTCGCCCAAA CGGGCGCGCTGGGCGAGATC AAG GGTCGCGACCAGGGCGCCGG GAATTGCCAGCACCA Rru_A3262 3761884 - 3758822 - | hypothetical protein TERM 4178 3760732 - 3760675 - G 72 -13.4 -3.13403 | gap 3, opp_overlap 3760693 3760710, overlap 3760673 3760677 TTCCCTGGATCAACA CACCGGCACTGCCGGCGCTCCAGGC-GCG CAG CGCCGCCTGGAGCG--GGCGGCGACGGCC GACGAATTGGTCGGC TERM 4179 3760730 - 3760677 - G 86 -18.2 -3.12895 | gap 3, opp_overlap 3760693 3760710, overlap 3760673 3760675 CCCTGGATCAACACA CCGGCACTGCCGGCGCTCCAGGC-GCG CAG CGCCGCCTGGAGCG--GGCGGCGACGG CCGACGAATTGGTCG Rru_A3263 3762918 - 3762022 - | cyclohexadienyl dehydrogenase TERM 4180 3762230 - 3762191 - G 71 -12.2 -3.26444 | gap 1, overlap 3762189 3762187 TTGTTCAAGAACACA TCGCGCCACATCACCGGAT CGG ACCCGGCGATGCGG-GTGA AATCGCGGAAGCCGC TERM 4181 3762491 - 3762512 + g 88 -7.9 -5.08824 | gap 1, opp_overlap 3762488 CCTTCGAACAATTCG GCGAACCCCG ACT CGGGGC-CGC TTTTTTCGGTGCCGG Rru_A3264 3764021 - 3762915 - | histidinol-phosphate aminotransferase TERM 4182 3764108 - 3764080 - R 80 -11.8 -3.72576 | CGCGCCTCGATCAAA CCGCGTTAAATG CTACC CCTTTAACGCGG AAACTTTGATCTCGA Rru_A3265 3765049 - 3764189 - | chorismate mutase TERM 4183 3765299 - 3765278 - g 79 -10.9 -3.90856 | gap 1 AACCGCTCAATCAAA GCGTC-ACGC TGT GCGTCGACGC GCCCATGCGCCTGGA TERM 4184 3765586 - 3765606 + G 70 -11.1 -3.62096 | opp_overlap 3765577 3765576 ATCAACCCGGCGACC GGCAAGCCC TGG GGGCTTGGC TTTCCCGTCATCACC TERM 4185 3766375 - 3766390 + G 87 -6.8 -5.02074 | gap 1 GCGGCCGACATGTTC GGCCTGC CGC GC-GGCC TTTTTTCGGGGATCC metX 3765238 - 3766413 + | homoserine O-acetyltransferase Rru_A3267 3766410 - 3767045 + | methionine biosynthesis MetW Rru_A3268 3767042 - 3767668 + | hypothetical protein Rru_A3269 3768440 - 3767646 - | hypothetical protein TERM 4186 3769079 - 3769089 + G 75 -6.8 -4.3739 | GCGCGCCCTGCCGGC CCAG ACC CTGG TTTTCTGCGGCCATG Rru_A3270 3768588 - 3769358 + | hydroxyacylglutathione hydrolase TERM 4187 3769781 - 3769748 - g 82 -12.5 -3.96327 | gap 1, opp_overlap 3769746 ACCCGCGACGATAAA TGGATC-GACCGCCAG AAG CTGGCGATCCGCTCCA CCCTTGATGTCTTGG Rru_A3271 3769361 - 3769999 + | glutathione S-transferase family protein TERM 4188 3770044 - 3770011 - T 74 -12.4 -3.27022 | gap 2, overlap 3769964 CTGAGGCGATAGGAA GGGGGGGGCG--CCCG CCGA CGGGTTCGCCCCTCCC GCCCCCGGTTGGCAG Rru_A3272 3771016 - 3770072 - | hypothetical protein TERM 4189 3770457 - 3770446 - G 70 -2.2 -4.67038 | CGGTGAAAACGAAAA CCGA TTTA TCGA ATTTGTGTTTCTTCG TERM 4190 3771115 - 3771094 - R 70 -4.5 -4.56597 | opp_overlap 3771094 GGCTCGCTCTAAAAA CCATATAAA CCGG TTAATATGG TTTTGTAAAGAAGCC TERM 4191 3771165 - 3771128 - R 73 -8.9 -3.90744 | gap 1, opp_overlap 3771155 TGGTTTTGTAAAGAA GCCGGGGAACCGCC-GCG ACC CGCAGGCGGAGCGCGGGC AGACGGGCGCCTTTG TERM 4192 3771310 - 3771288 - R 70 -10.4 -3.54741 | CAGGAGTGTTGGAAA GCCGCTGGAG CGT CGCCCGCGGC CTCAGGGGTCCCGGT Rru_A3273 3771983 - 3771312 - | hypothetical protein TERM 4193 3771971 - 3771954 - G 100 -10.5 -4.72272 | opp_overlap 3771954 TGGCCCCATGAAAAA GGGGAGC GAAA GCCCCCC TTTGTCGCCCATGGA Rru_A3274 3772631 - 3771999 - | hypothetical protein Rru_A3275 3773624 - 3772689 - | Hsp33 protein Rru_A3276 3774617 - 3773691 - | ornithine carbamoyltransferase Rru_A3277 3775810 - 3774620 - | acetylornithine aminotransferase TERM 4194 3775881 - 3775854 - R 100 -14.2 -5.0538 | gap 1, opp_overlap 3775879, overlap 3775857 TTGGAGTTGAAAAAA CGA-GGGCGGCAC CGA ATGCCGCCCGTCG CAGGAAAGCGAGTGT TERM 4195 3775877 - 3775857 - R 86 -14.7 -3.38726 | overlap 3775854 GAGTTGAAAAAACGA GGGCGGCAC CGA ATGCCGCCC GTCGCAGGAAAGCGA Rru_A3278 3777023 - 3776040 - | ADP-glyceromanno-heptose 6-epimerase precursor Rru_A3279 3777288 - 3777656 + | hypothetical protein TERM 4196 3777697 - 3777658 - f 88 -13.5 -3.57144 | gap 1, opp_overlap 3777694, overlap 3777641 3777662 CGTCCGACCTCTAAA GCGACCGGCGA-CGGGGC CGATC GCCCGGCTCCCCGGCCGC CTCCGCCACGCGCCC TERM 4197 3777708 - 3777759 + F 86 -13.8 -3.53012 | gap 3, opp_overlap 3777662, overlap 3777694 3777709 GCCGCCTCCGCCACG CGCCCGTGCC--CGGCGA-CGGTCC CTTGC GGACCGGTCGCCGGCGGCACGGCCC TTTCCGCGCCCGCAC TERM 4198 3777709 - 3777758 + F 84 -17.3 -2.71712 | gap 3, opp_overlap 3777662, overlap 3777694 3777708 CCGCCTCCGCCACGC GCCCGTGCC--CGGCGA-CGGTCC CTTGC GGACCGGTCGCCGGCGGCACGGCC CTTTCCGCGCCCGCA TERM 4199 3778369 - 3778389 + G 75 -9.6 -4.07885 | GCGGCAAAAGCGCGC GGGAGGCC GTGGA GGCCGCCC TTTTGGAAACCGCTG Rru_A3280 3777915 - 3778415 + | hypothetical protein TERM 4200 3778814 - 3778793 - g 90 -18.7 -3.04461 | opp_overlap 3778786 GAGCGATGCCCAACA CCCCGGCCG CCGT CGGCCGGGG CGCCAGCGTGCTCTG Rru_A3281 3778417 - 3779241 + | pyrroline-5-carboxylate reductase TERM 4201 3779408 - 3779433 + G 88 -16.2 -3.6502 | overlap 3779416 3779418 GTCGCGGGGCACCCT GGCCGGCATC GCCGCG GATGCCGGCC TTTCCCTGGCCGATC TERM 4202 3779535 - 3779565 + G 76 -8.2 -4.20696 | opp_overlap 3779530, overlap 3779536 3779561 GCCGAAGGGACGGCG ACCGATCCCGGG GAAAGCG CCCGCGATCGGC TTTTCGAATTGCTGA Rru_A3282 3779328 - 3779972 + | hypothetical protein Rru_A3283 3780097 - 3780573 + | phasin TERM 4203 3780694 - 3780734 + F 86 -13.5 -3.53012 | opp_overlap 3780694 3780710 GAAGCGAATCCCAAA GCGAACCGCGTTAAA CGCCCCTCTTC TTTGACGCGGTTCGC TTTACAGCGAGAGGC TERM 4204 3780734 - 3780694 - f 77 -11.3 -3.67864 | opp_overlap 3780694, overlap 3780710 GAAGCGAATCCCAAA GCGAACCGCGTTAAA CGCCCCTCTTC TTTGACGCGGTTCGC TTTACAGCGAGAGGC Rru_A3284 3780755 - 3781090 + | secretion chaperone CsaA TERM 4205 3781154 - 3781120 - T 100 -18.7 -4.07687 | opp_overlap 3781120, overlap 3781128 ACCCGCCCGTGAAAA CCCAAAAAGGGGAGC GCGAG GCTCCCCCTTTCGGG TTTTTTTCGTTCCAG TERM 4206 3781120 - 3781154 + T 100 -14.3 -5.63103 | opp_overlap 3781120 3781128 ACCCGCCCGTGAAAA CCCAAAAAGGGGAGC GCGAG GCTCCCCCTTTCGGG TTTTTTTCGTTCCAG TERM 4207 3781146 - 3781128 - T 100 -11.7 -4.87318 | opp_overlap 3781120, overlap 3781120 GTGAAAACCCAAAAA GGGGAGC GCGAG GCTCCCC CTTTCGGGTTTTTTT Rru_A3285 3782007 - 3781210 - | two-component response regulator Rru_A3286 3782459 - 3782908 + | hypothetical protein Rru_A3287 3782923 - 3783759 + | sigma-24 (FecI) Rru_A3288 3783855 - 3785843 + | Signal transduction histidine kinase Rru_A3289 3785905 - 3786972 + | diacylglycerol kinase, catalytic region TERM 4208 3787519 - 3787544 + G 78 -14.7 -3.32727 | gap 1 CAACGCCGCCGGGGC CCTGCG-CGCGC TTG GCGCGGCGCGGG TTGATCTGATGTTGA Rru_A3290 3786977 - 3787846 + | metallophosphoesterase TERM 4209 3787882 - 3787852 - f 78 -10.3 -3.93369 | gap 1 GCAATCGTAAGCAAA GGCCGCCCCTTGGC TTCG GCCC-GGGGCGCCC CATGTCAGACCCACA TERM 4210 3787958 - 3787936 - f 77 -3.3 -4.93296 | overlap 3787937 3787938 TGAGGACTATAAAAA GGGGATCGG TCGAT CCGATCCGT CACATCAAGGGGATA Rru_A3291 3787981 - 3788169 + | hypothetical protein TERM 4211 3788165 - 3788211 + T 82 -14.6 -3.17051 | gap 1, overlap 3788150 3788161 3788166 GCCCGCGCTCGGCCC GC-TAGAGCGCCGAGCGTGAA ATCTGG TTCACGCTCGGCACTCTAAGA TCTTGATCGTCAAGC TERM 4212 3788166 - 3788210 + T 85 -18.1 -2.50016 | gap 1, overlap 3788150 3788165 3788161 CCCGCGCTCGGCCCG C-TAGAGCGCCGAGCGTGAA ATCTGG TTCACGCTCGGCACTCTAAG ATCTTGATCGTCAAG Rru_A3292 3789099 - 3788317 - | hypothetical protein TERM 4213 3788456 - 3788444 - G 70 -10.5 -3.72576 | opp_overlap 3788444 TCGCTTTCGACCAAA CCGGC CGC GCCGG TTTCCAGGGTGTCGC TERM 4214 3788517 - 3788489 - G 72 -8.8 -4.07687 | gap 1 AGGGTCTGGGTAAAA TCGGCCCGGGTCG AGAG CG-CCGAGGCCGA AGTGCCGAAGCTGGC TERM 4215 3788976 - 3789001 + g 70 -11.1 -3.55444 | gap 1, opp_overlap 3788964 3788976 AGATCTGGGCGAACA CGGCCAGACGCG TAT CGCG-CTGCCCG TTTGCCAGCTCGACC Rru_A3293 3789275 - 3790102 + | NarL family two-component response regulator Rru_A3294 3790103 - 3790411 + | KaiB Rru_A3295 3790408 - 3791922 + | circadian clock protein KaiC TERM 4216 3792701 - 3792717 + G 85 -7.9 -4.82901 | TGACCTCGAGTCCCT GCGTCCG GCC CCGACGC TTTTTCTCGACGCCC Rru_A3296 3791931 - 3793883 + | PAS/PAC sensor Signal transduction histidine kinase Rru_A3297 3794061 - 3794816 + | hypothetical protein TERM 4217 3795024 - 3795069 + G 72 -8.2 -4.0942 | CCTGTTCACCGGCAC GCCGGTCGCCGGTGC-GAGCTG GGCG CTGCTCTGCGTCGGCG-TCGCC TTTCTGTGGTCGCTG Rru_A3298 3794809 - 3795162 + | hypothetical protein TERM 4218 3795156 - 3795205 + T 76 -14.4 -2.53255 | opp_overlap 3795168 3795179, overlap 3795155 3795168 3795201 3795201 CGGCGTGGTCTTTCC CGGCTAGAGCAATTGGCGTGAA ACGCGG TTCACGCCAATTGCTCCGGGGG CTTGCTCCCTCTTCT Rru_A3299 3797370 - 3795220 - | glycoside hydrolase family protein TERM 4219 3795763 - 3795712 - G 70 -10.9 -3.61517 | gap 3, overlap 3795747 ACGCGCCCCGAAGAA CAGC-GGCACCTGCCCGACA--TGGC GCG GCCAACTGACCGGCAGGCGCCCGCCG GGATCGCTCAGCCCG TERM 4220 3796300 - 3796290 - G 75 -4.6 -4.63932 | overlap 3796291 3796293 GATTGCTCAATAAAA CCAC GCT GCGG CTGGCCGCCTTGCGG TERM 4221 3797730 - 3797745 + G 72 -4.6 -4.55491 | CCAGATGTGGCTGAA CGCCTG GAAC CAGCCG TTTTATGATTCGCTG TERM 4222 3798305 - 3798287 - g 76 -14.6 -3.10344 | GGGTCAGCGAACATA TGGAGGGC ATC GCCCTCCA CGGCGGCGAGGCCGA Rru_A3300 3797539 - 3799428 + | ABC transporter component TERM 4223 3799490 - 3799505 + G 74 -5.4 -4.56597 | gap 1 GCTTGATCTCGTCCA GCGCCAG AGC CTG-CGC TTTTTCGACGAGGGC Rru_A3301 3799425 - 3800699 + | hypothetical protein TERM 4224 3800859 - 3800833 - g 78 -13.7 -3.53012 | CGCTGTTTGGTCAAA GGATCGTGCCG CTGCC CGGCTCGATCC TGGCCTCGCCGGTCG TERM 4225 3801264 - 3801290 + G 86 -18 -3.14881 | opp_overlap 3801268 CGCTGGGATGCCCAA GGGACGGTCGAC GAG GCCGACCGTCCC TTGCTCCAGGCCTTG Rru_A3302 3800703 - 3802073 + | glucan 1,4-alpha-glucosidase TERM 4226 3802189 - 3802176 - f 79 -9.5 -4.2828 | GGCGACGGAGGAAAA CCGGC CAAA GCCGG ACATCGGACCTGTGG TERM 4227 3803280 - 3803264 - g 82 -11.5 -4.07885 | opp_overlap 3803274 CATGTTCGCCGAAAA CGGCACG GTC CGCGCCG ACGGCCGTATGGTCC Rru_A3303 3802218 - 3803432 + | amide-urea binding protein TERM 4228 3803452 - 3803480 + F 89 -16 -3.27475 | gap 1, overlap 3803450 CCTAAGCGCCCCTCC CCCGGGGTGTCGG CCAA CCGGC-CCCCGGG TCTTGTCCTACCCCC TERM 4229 3803838 - 3803850 + G 71 -9.1 -3.80625 | opp_overlap 3803814 3803838 CGCCCTGCAACGCAA GCTGG GCA CCAGC TTTCACTTCTGGCGC Rru_A3304 3803515 - 3804267 + | ABC transporter component TERM 4230 3804842 - 3804862 + G 72 -5.4 -4.4078 | ACCCGCGGCTTCACC GTACTGCT GGTCG AGCAGAAC TTTTCCTTCGCCAGC Rru_A3305 3804260 - 3804988 + | ABC transporter component TERM 4231 3805539 - 3805492 - g 79 -3.2 -5.08824 | overlap 3805529 TTCTGATCGAAAAAA CCAGGGCCGGGGCGGTGATG CGGGCGGC CACCGAGAACCCGACCCTGG TCAAGGCCTTCGGCA TERM 4232 3805595 - 3805610 + G 72 -11.8 -3.54741 | overlap 3805596 3805597 CACCTATGGCCTGGG GGCGGC GCTC GCCGCC TTTGCCGGGGTGCTG TERM 4233 3805824 - 3805848 + G 100 -12.1 -4.56597 | GTCATCATGGCCCTG GTCCTGCTGGT CAA ACCGGCCGGAC TTTTTGGAAGGACGC Rru_A3306 3804981 - 3805868 + | inner-membrane translocator Rru_A3307 3805869 - 3806813 + | inner-membrane translocator TERM 4234 3806867 - 3806827 - f 100 -22.8 -4.15788 | gap 1, opp_overlap 3806833, overlap 3806828 3806833 AACGGCCTGAACAAA CGAAAACCCCGCCGGACCC GAAA GGGTC-GGCGGGGTTTTCA ATGCGCAAAGACATT TERM 4235 3806866 - 3806828 - f 100 -24.1 -3.08991 | gap 1, opp_overlap 3806833, overlap 3806827 3806833 ACGGCCTGAACAAAC GAAAACCCCGCCGGACCC GAAA GGGTC-GGCGGGGTTTTC AATGCGCAAAGACAT TERM 4236 3806833 - 3806861 + F 100 -18.2 -4.18018 | gap 1, opp_overlap 3806833 3806828 3806827 CTGAACAAACGAAAA CCCCGCCGGACCC GAAA GGGTC-GGCGGGG TTTTCAATGCGCAAA TERM 4237 3806861 - 3806833 - f 100 -18.2 -4.67942 | gap 1, opp_overlap 3806833, overlap 3806828 3806827 CTGAACAAACGAAAA CCCCGCCGGACCC GAAA GGGTC-GGCGGGG TTTTCAATGCGCAAA TERM 4238 3808262 - 3808275 + F 78 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTAGTAAACAGT TERM 4239 3813022 - 3812997 - f 85 -2.3 -5.37865 | overlap 3812998 3813001 GGAAGAACCAAAAAA CGGAGTCCCCA AGCG CGGGCCCGCCG CAGCTTGCGCGCACG Rru_A3308 3813402 - 3814118 + | putative transposase TERM 4240 3814678 - 3814695 + G 95 -6.3 -5.47159 | opp_overlap 3814657 3814678, overlap 3814657 TTGCGATATTTAAAG CTGTTTC CAAT GAAGCAG TTTTTATTTATTACG Rru_A3309 3814171 - 3814932 + | sulfotransferase Rru_A3310 3815637 - 3815179 - | ISMca6, transposase, OrfB TERM 4241 3816149 - 3816118 - R 86 -18.1 -2.69151 | overlap 3816122 GGGCCGCAGATAGCA GAAAGGCCGGAGC TTTGTT GCTCCGGCCTTCC AGTGGTGCGCCCGAA TERM 4242 3816145 - 3816122 - R 95 -15.3 -4.04318 | overlap 3816118 CGCAGATAGCAGAAA GGCCGGAGC TTTGTT GCTCCGGCC TTCCAGTGGTGCGCC Rru_A3311 3816618 - 3816283 - | plasmid maintenance system antidote protein Rru_A3312 3817620 - 3816901 - | resolvase-like protein TERM 4243 3818531 - 3818508 - R 100 -8.8 -5.76633 | TTATAGATAAAAAAA GGGGAACACC CGAA GGCATCCCCC AATGTTTCCCATGAC Rru_A3313 3819504 - 3818575 - | minor capsid protein 10 TERM 4244 3821907 - 3821887 - R 72 -11.1 -3.36175 | opp_overlap 3821887 AATTCCCATGGATAA CCCGCTCCA CCA TGGAGCGCG TTTCTGTCTTCCTGA TERM 4245 3821887 - 3821907 + r 89 -11.1 -4.22927 | opp_overlap 3821887 AATTCCCATGGATAA CCCGCTCCA CCA TGGAGCGCG TTTCTGTCTTCCTGA Rru_A3314 3822866 - 3822138 - | phage-encoded protein-like TERM 4246 3823766 - 3823755 - R 85 -3 -5.40873 | overlap 3823765 AATACAAAAATAAAA CATT CCAC AATG CATTGCGTAAAGCGC Rru_A3316 3825854 - 3824154 - | Phage integrase TERM 4247 3826304 - 3826290 - H 72 -2.1 -4.77173 | TGGGCATAAAATAAA GCTCA AGTAA TAAGC CCAGCACCATCGGGA Rru_A3317 3826395 - 3827531 + | hypothetical protein TERM 4248 3827575 - 3827596 + T 100 -15.9 -5.60993 | TTGCCGCCATGAGCC TCCCCGGAC CCGC GTCCGGGGA TTTTTTTATGCCGCC Rru_A3318 3829229 - 3827625 - | gamma-glutamyltransferase TERM 4249 3828552 - 3828591 + g 75 -9.1 -4.08216 | GGCGAGATCGCCCGC GGTCACCGGCGCGCCCA CCGCCT TGAGGGCGGCGGCGACC TTTTGGCCGACCTCG Rru_A3319 3829379 - 3829936 + | xanthine-guanine phosphoribosyltransferase Rru_A3320 3830924 - 3830052 - | pantothenate synthetase panB 3831780 - 3830944 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 4250 3831283 - 3831229 - G 70 -12 -3.38272 | gap 2, opp_overlap 3831231, overlap 3831205 GACGACGATCGAGAA GGCCCCGGCCTCGGCGATGG-C-CCG GGTTT CGGCGACCACCGCCTCGGCCTCGGCC TCGTCGCGGCCCTGG Rru_A3322 3832735 - 3831947 - | Crp/FNR family transcriptional regulator TERM 4251 3832291 - 3832264 - G 74 -12.6 -3.61398 | GGGTCCGCTGAAGAA CCGAGCGCGCCA GCAC CGGGGCGCCCGG GAAAAGCTGCTCGAG Rru_A3323 3833105 - 3832890 - | cytochrome oxidase maturation protein cbb3-type Rru_A3324 3835564 - 3833135 - | copper-translocating P-type ATPase Rru_A3325 3836084 - 3835575 - | integral membrane protein linked to a cation pump-like Rru_A3326 3837755 - 3836235 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 4252 3837474 - 3837454 - G 79 -6.7 -4.63048 | overlap 3837456 3837457 TCGATAAAGAAGAAA TAGGCCCGG CGC CCGGGCATG TCGATGAAGATGGCC TERM 4253 3837472 - 3837456 - G 73 -9.3 -3.91443 | overlap 3837454 3837457 GATAAAGAAGAAATA GGCCCGG CGC CCGGGCA TGTCGATGAAGATGG TERM 4254 3837805 - 3837779 - H 83 -2.8 -5.27923 | overlap 3837780 3837800 CAAGGCGATAAAAAA CCGGCGCTTCCC GTA GGATAACCCCGA AGGGCCCCTTAAGCG TERM 4255 3838126 - 3838116 - H 83 -4.6 -5.02476 | ATACTTCGCAAAAAA GCGA TCG CCGC CATGCGCAGTGGGAA TERM 4256 3838350 - 3838311 - g 72 -14.1 -3.07935 | ACGCCACCCACCGAA CGGCCCCCGGCGGGACG CGAGGC CGGCCCACGGGGGGCGG GCGCCGCTCGCCCCG TERM 4257 3838402 - 3838454 + G 74 -12.6 -3.53012 | gap 2 CGGGCGCGGGCGATG GGCCAAGCCG-G-GGCGATCCGGCCG GGA CGGCCCCGCCGCCGCGCGGCTTCGCC TTTGACGAGCCCGCC TERM 4258 3838860 - 3838847 - g 72 -4.5 -4.45544 | overlap 3838849 GGCGATGAAGGAAAA GACCG TGGT CGATC ACCCGACCGAGGGCA Rru_A3327 3838254 - 3839444 + | hypothetical protein TERM 4259 3839487 - 3839518 + T 73 -13.6 -2.77899 | opp_overlap 3839488, overlap 3839484 3839489 TTGCTCGAATTGAAA ACGGCGCGCCTCCT TTGG GGGAGACGCGCCGC TGATTCATAAACCAC TERM 4260 3839517 - 3839488 - T 100 -18.6 -4.27316 | opp_overlap 3839487 3839484 3839489 TGCTCGAATTGAAAA CGGCGCGCCTCC TTTGGG GGAGACGCGCCG CTGATTCATAAACCA Rru_A3328 3840377 - 3839556 - | OmpA/MotB TERM 4261 3840144 - 3840177 + g 71 -9.6 -3.78778 | gap 2 GGCCATCGCCGTGGG GGCAGGGGTCTGGCCG GCGG CGGCCAG-CTTC-GCC TTGTTGGTGTAATAG TERM 4262 3840992 - 3841022 + G 70 -11.1 -3.54475 | CGCTCTCTGTGTGTC CTCGCAGGTCGGC TGCAC GCTGACCTGCCGG TTCTGTCATACGGGC Rru_A3329 3840540 - 3841826 + | hypothetical protein TERM 4263 3841888 - 3841858 - T 100 -23.4 -4.72272 | opp_overlap 3841858 CGCCTCCACGAAAAA CCGCCCGGCTCCTT CGC AAGGAACCGGGCGG TTTTTTTATCGGGAT TERM 4264 3841858 - 3841888 + T 100 -21.2 -5.61596 | opp_overlap 3841858 CGCCTCCACGAAAAA CCGCCCGGCTCCTT CGC AAGGAACCGGGCGG TTTTTTTATCGGGAT Rru_A3330 3842801 - 3841926 - | cytochrome c oxidase cbb3-type, subunit III Rru_A3331 3843780 - 3843037 - | cytochrome C oxidase, mono-heme subunit/FixO TERM 4265 3843734 - 3843720 - G 70 -6.4 -4.26076 | opp_overlap 3843693 3843690 3843689 TCACCGTGAGGAAAA TCCCCA CGG TGAGGA ACAGGGCGTTGGTTT Rru_A3332 3845285 - 3843795 - | cytochrome c oxidase cbb3-type, subunit I TERM 4266 3845795 - 3845812 + G 75 -6.9 -4.36914 | overlap 3845796 ACTCGAAGCGGCTCC GCCAGGG CCAT CCCTGGG TTTTCTCCAACGAGA TERM 4267 3846281 - 3846257 - g 74 -9.9 -3.76224 | overlap 3846258 GGCTGACCCAGGAAA CCGCCCTGGCC CGG GGCCAGATCGA CGGCCCGGTGCCGGT TERM 4268 3846561 - 3846525 - g 70 -13.6 -3.01712 | gap 1 GCTGCTGGCCCAACA GGCCGCCGCCACCGCCG GACT CGGCGG-GGCGCTGACC ACCCACAAGGCCGAG TERM 4269 3846715 - 3846738 + G 76 -8.8 -4.23674 | gap 1 GTCGCCCGCCTCGCC GCCGCCCTGGT CGA ACCCG-GCGGC TTTCTGTTCGTCGCC Rru_A3333 3845680 - 3846930 + | SAM-dependent methyltransferase TERM 4270 3846955 - 3847003 + F 100 -16.8 -3.56244 | gap 2, opp_overlap 3846931, overlap 3846945 3846956 TCTGATCGGCCTCGC CGATCCTTCCGCCGGCTCCCTCTT TCA AAG-GGGGGCCGGCGGGAGCG-CG CTTTTCTTCTTGTCC TERM 4271 3846956 - 3847004 + F 100 -14.6 -4.95547 | opp_overlap 3846931, overlap 3846945 3846955 CTGATCGGCCTCGCC GATC-CTTCCGCCGGCTCCCTCTT TCA AAG-GGGGGCCGGCGGGAGCGCGC TTTTCTTCTTGTCCC Rru_A3334 3847038 - 3848126 + | putative ammonia monooxygenase Rru_A3335 3849163 - 3848123 - | periplasmic sensor Signal transduction histidine kinase TERM 4272 3848818 - 3848783 - G 78 -10.3 -4.08216 | overlap 3848784 3848791 3848792 CGACTCGGCGGAAAA GGCCAGAACCCGGCG GGCCGG CGCCCGGCCCTGGCG CAAGAGCACCAGAAA TERM 4273 3848817 - 3848784 - G 72 -13.8 -3.04715 | overlap 3848783 3848791 3848792 GACTCGGCGGAAAAG GCCAGAACCCGGCG GGCCGG CGCCCGGCCCTGGC GCAAGAGCACCAGAA TERM 4274 3848877 - 3848842 - G 79 -4.6 -4.82678 | gap 1, overlap 3848843 3848844 3848872 CCAGAAAAACCAAAA CCCCGGTTCCCGCCGCC AAG GGCAGCGA-AAGCGGCA AAATCCCGCGCGCCG TERM 4275 3848926 - 3848872 - G 73 -10.7 -3.66874 | opp_overlap 3848905, overlap 3848844 3848843 3848842 3848881 CCAAGGGCAGCGAAA GC-GGCAAAATCCCGCGCGCCGTATCC AGC AGAT-CGGCGCGCGCCGCTTCGCCCGC ATCGCCCGAGGCGGT TERM 4276 3848916 - 3848881 - G 70 -6 -4.17089 | gap 1, opp_overlap 3848905, overlap 3848872 GCGAAAGCGGCAAAA TCCCGCGCGCCGTATCC AGC AGAT-CGGCGCGCGCCG CTTCGCCCGCATCGC TERM 4277 3849075 - 3849061 - G 71 -9.2 -3.79906 | overlap 3849062 CCAGCGCCACAAGAA CGGCGC AGA GCGCCA GCAGGCGGATGGCGA TERM 4278 3849276 - 3849261 - H 71 -6.8 -4.24342 | gap 1, opp_overlap 3849265, overlap 3849257 3849262 GGCGGCAGGAACAAA GGACGCC CCC GGCG-CC GCCTTGGACTATGAT TERM 4279 3849383 - 3849359 - H 89 -9.9 -4.59853 | opp_overlap 3849358 3849357 CCAAGGGTGGAAAAA CCCGGGCAACG GAC CGTTGACCTGG GCCTTTCCCGCCGCT Rru_A3336 3849462 - 3849596 + | 50S ribosomal protein L34P TERM 4280 3849788 - 3849812 + G 85 -5.6 -5.03314 | GCAGCGCGCTTGCCG TCGGCCGCCT TAAAC AGCGGGCCGA TTTTTTGCGCGTCGC Rru_A3337 3849628 - 3850152 + | ribonuclease P protein Rru_A3338 3850149 - 3850496 + | hypothetical protein TERM 4281 3850791 - 3850758 - g 77 -10.9 -3.85817 | gap 1, overlap 3850737 AGGCGCCGGGACAAA GCCCGGTCGCGGCACC GCA GGTGCC-CGCCCAGCC GGGCGCGGCGGTTCC TERM 4282 3851868 - 3851835 - g 74 -14.7 -3.04144 | overlap 3851839 GGTCGATGTCGAAGA TGAAGCTGCTCCAGC CCGA GCTGAAGAAGCTTCA GGAGCGCTTCAAGGA Rru_A3339 3850574 - 3852361 + | putative inner membrane protein translocase component YidC TERM 4283 3852869 - 3852833 - g 76 -6.4 -4.45544 | gap 1, overlap 3852836 TGGCATCAAGGAAAA CGACCGCGACGTCATGC GCAT GCTCGACGAGGCGG-CG GTCAGCTATCAGATC Rru_A3340 3852366 - 3853061 + | GTPase EngB TERM 4284 3853085 - 3853105 + F 93 -11.1 -4.3739 | CGCCCCTCCGCCCAG CGGCCGG CGGATGC CCGGCCG TTTTCTCCGAAAGTC Rru_A3341 3853155 - 3854087 + | acetylglutamate kinase TERM 4285 3854084 - 3854138 + F 73 -9.6 -3.91144 | gap 4, opp_overlap 3854104, overlap 3854085 3854087 3854087 3854104 GATCCGGGCGAGCCG CTAGAGCGGCGA--G--CGGAAAAGTGG GTC CCGCTTTTCCGCGCCGTCGCCGCTCTAA TTTATAGACTCTCGA TERM 4286 3854085 - 3854137 + F 70 -13.1 -2.94365 | gap 4, opp_overlap 3854104, overlap 3854084 3854087 3854087 3854104 ATCCGGGCGAGCCGC TAGAGCGGCGA--G--CGGAAAAGTGG GTC CCGCTTTTCCGCGCCGTCGCCGCTCTA ATTTATAGACTCTCG Rru_A3342 3854287 - 3855165 + | dihydrodipicolinate synthase Rru_A3343 3855304 - 3856020 + | pyrimidine 5-nucleotidase TERM 4287 3856015 - 3856065 + T 100 -23.7 -3.06261 | opp_overlap 3856022, overlap 3856017 3856022 CCGGAAGTCTGCTTA GATTAAAGTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGACTTTGATC TATTCCCCCTTGCCG TERM 4288 3856017 - 3856063 + T 95 -20.5 -3.08867 | opp_overlap 3856022, overlap 3856015 3856022 GGAAGTCTGCTTAGA TTAAAGTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGACTTTGA TCTATTCCCCCTTGC TERM 4289 3856058 - 3856022 - T 100 -20.4 -3.83026 | opp_overlap 3856017 3856015 3856022 TCTGCTTAGATTAAA GTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGAC TTTGATCTATTCCCC TERM 4290 3856022 - 3856058 + T 100 -18.2 -3.93262 | opp_overlap 3856022, overlap 3856017 3856015 TCTGCTTAGATTAAA GTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGAC TTTGATCTATTCCCC Rru_A3344 3856442 - 3856065 - | XRE family transcriptional regulator TERM 4291 3858208 - 3858254 + G 75 -11.5 -3.66803 | opp_overlap 3858201, overlap 3858209 3858211 CAACGACACCCTGGG GCAGGCGACAGGCGATGCCCT GCTCA AGCGCATCGCCCATCGTCTGG TTTCCAGTCTTCCCG TERM 4292 3858209 - 3858253 + G 72 -15 -2.7976 | opp_overlap 3858201, overlap 3858208 3858211 AACGACACCCTGGGG CAGGCGACAGGCGATGCCCT GCTCA AGCGCATCGCCCATCGTCTG GTTTCCAGTCTTCCC TERM 4293 3858973 - 3858962 - g 74 -2.2 -4.72386 | opp_overlap 3858964 3858965, overlap 3858963 3858966 GAAATCACCGAAAAA GTCA CCCT CGAC CGCGACGAGGGCATT Rru_A3345 3857249 - 3859366 + | diguanylate cyclase/phosphodiesterase TERM 4294 3859375 - 3859394 + F 84 -11.4 -4.07568 | gap 1 CGCCTGACCGCCGGA GGCG-CCCC CCC GGGGTCGCC TTTTGGCCGGGCGGG TERM 4295 3859422 - 3859437 + F 78 -10.4 -3.85909 | overlap 3859425 GGGGGAAAGGATCGG GGAGCG AGGG CGCTCC TTTCGCTTTCGATAC TERM 4296 3859462 - 3859491 + F 81 -16.5 -2.97613 | opp_overlap 3859455, overlap 3859457 CGATACGACCTTCCA CGCTCCCTTGAAC GCCC GATCAAGGGAGCG TATCGTTGGTTGATC TERM 4297 3859889 - 3859876 - g 70 -5.9 -4.2828 | opp_overlap 3859881, overlap 3859879 TCTGATCCAGGAAAA GGAGC TGAC GCCCC AGCGCATCCGTTCGG TERM 4298 3860672 - 3860694 + G 74 -7.7 -4.24342 | gap 1, overlap 3860653 3860656 3860650 GCGGCGATGATCTCG GTGCCG-TGG TTTC CCGGCGGCAC TTTGTTGCTGGCCAC Rru_A3346 3859709 - 3861127 + | polysaccharide biosynthesis protein TERM 4299 3861440 - 3861466 + G 70 -5.9 -4.25104 | gap 1, overlap 3861441 GCCTTGAACGGGTGA TCACC-GACGAG GCCA TTCGTCTGGTGG TTTTCATGAGCGCCC TERM 4300 3861881 - 3861903 + G 93 -4.6 -5.38054 | opp_overlap 3861880 3861879, overlap 3861882 GCGCCGTCAAAGACG CCCGCCCGGC CTT GCCGATCGGC TTTTTCTTTGTCGGC Rru_A3347 3861157 - 3862359 + | glycosyl transferase, group 1 Rru_A3348 3863534 - 3862356 - | hypothetical protein Rru_A3349 3863698 - 3864180 + | transcription activator, effector binding Rru_A3350 3864323 - 3864841 + | peptide deformylase TERM 4301 3864965 - 3864909 - g 83 -14.2 -3.78934 | gap 1, opp_overlap 3864917 CGCCTTGCATAACAA CCCCGACCTGACGCTGCGCGCCGTCTA TTGC CAGCCGCCGCGCGCCGCC-GGACGGGG CAAGAAGCCAAGGCC Rru_A3351 3864838 - 3865767 + | methionyl-tRNA formyltransferase Rru_A3352 3865771 - 3866607 + | pseudouridylate synthase Rru_A3353 3866604 - 3866924 + | small multidrug resistance protein Rru_A3354 3867768 - 3866971 - | hypothetical protein Rru_A3355 3868163 - 3867765 - | hypothetical protein Rru_A3356 3869472 - 3868216 - | polyhydroxyalkanoate depolymerase TERM 4302 3870312 - 3870342 + G 74 -7.5 -4.24123 | gap 1, overlap 3870290 3870340 CCGGTGCTGCGTCTG GCCGCCCGCCAACC CTTC GATTGGCCGG-GGC TTTTGGCCTTCTTCC TERM 4303 3870812 - 3870755 - g 81 -16.1 -3.14564 | gap 1, opp_overlap 3870755 3870756 3870762 CGAGCCCTTGACCAA CGCCCC-GCCGGCCGGGCCGTCGCGG CTGTTCC CCACGGCGGCGCGGCTGGCCGAGGCC GATTTGGGCGGCCTG TERM 4304 3870755 - 3870813 + G 75 -15.9 -2.72144 | gap 2, opp_overlap 3870755, overlap 3870756 3870762 CGAGCCCTTGACCAA CG-CCCCG-CCGGCCGGGCCGTCGCGG CTGTTCC CCACGGCGGCGCGGCTGGCCGAGGCCG ATTTGGGCGGCCTGG Rru_A3357 3869691 - 3871151 + | transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase Rru_A3359 3873038 - 3871656 - | cobyrinic acid a,c-diamide synthase TERM 4305 3871729 - 3871696 - Gg 77 -7.3 -4.45485 | overlap 3871698 ATCAGATGTAGAAAA CTGCCGGCCACCG ATCCCCGG CGCTGGCCGACCG ACCCCAGCGCCGTTC Rru_A3358 3871151 - 3871759 + | methylated-DNA--(protein)-cysteine S-methyltransferase TERM 4306 3871815 - 3871770 - GT 77 -10.9 -3.65314 | CGTAACGGCGAACAA CCGCCCCGCCTCGTCCCCCGC CTCG GCGATGATCGAGGCGTAGTGG AATTCATGGGCGGAA TERM 4307 3871868 - 3871915 + gT 72 -14 -2.62184 | gap 1 GCCAGCCCGCCGACA GCTGCCGCGCCCGCCGATAGCCA AGA TGGCGG-CGGCGGGCGGCGAAGC TGGTATCGACGGGCA TERM 4308 3872077 - 3872059 - GT 71 -8.8 -3.72695 | AGGCTGGGCAGGAAA GTCCGACC GGC GGCCAGAC GCCCGGCATGAAGCT TERM 4309 3872288 - 3872298 + gT 75 -4.6 -4.59853 | overlap 3872239 3872279 GCCGGGGGGCCGCAT CGGT CGG GCCG TTTTTGAGCGGTTGG TERM 4310 3872413 - 3872380 - GT 70 -2.3 -4.63218 | gap 1, overlap 3872381 CTGGCGTCAAGAAAA CGCTCCAGG-TCGGGA TGC TCGCGGGCCTGGACCA GCCCAAGGTGGCGTT Rru_A3360 3873667 - 3873035 - | electron transport protein SCO1/SenC Rru_A3361 3874469 - 3873702 - | hypothetical protein TERM 4311 3873794 - 3873759 - G 71 -9 -3.8591 | gap 1, overlap 3873738 3873737 3873782 GTTGATAATCAACAA CACCGGCGCGACCGT GTCCATA ACG-CCGCGCCAGCG CGCGGTGGCGATCTG Rru_A3362 3875363 - 3874488 - | uroporphyrinogen-III C-methyltransferase Rru_A3363 3876966 - 3875419 - | PAS/PAC sensor Signal transduction histidine kinase Rru_A3364 3878199 - 3876970 - | hypothetical protein TERM 4312 3877477 - 3877491 + g 84 -9.2 -4.57073 | GAGCGTGGTCTCGAT GCCGTC ATG GGCGGC TTTTTCCAGAAGATC TERM 4313 3878077 - 3878064 - G 79 -3.1 -5.00616 | gap 1, overlap 3878065 CCCGGGCCGAAAAAA GGTCGA CCA TCG-CC TCGGCGAGACGGTTG TERM 4314 3879288 - 3879261 - g 72 -7 -4.25104 | gap 1 TGGCCGGCATCAAAA GCGTGGCCGA-CT GCC AGATCGGCGACAC CATCACCGATGACCG TERM 4315 3880172 - 3880159 - g 79 -2.3 -5.07486 | overlap 3880160 CACCCGCAAGAAAAA GCTGC TGGA GAAGC AGAAAGAGGGCAAGA Rru_A3365 3878399 - 3880264 + | GTP-binding protein LepA TERM 4316 3880894 - 3880942 + G 87 -6.7 -5.00616 | gap 3, overlap 3880899 3880900 3880929 CCGGTGGCCGGCCTT CTGGGCGACGAGCCCGATGCCGCC GATG GGCGG-AGCGGGGTCG-C-CCTGG TTTTTTACCGCGCCC TERM 4317 3880978 - 3881035 + G 70 -13.4 -3.06815 | gap 3, overlap 3881017 CAGGCGGGGGATCTG GCGCCGATCACCGCGCTGCGGGCGGCGCT GGA GGCGC-GCGGGCTGCG-GGTGGTCG-CGC TCTATTGCACCAGCT TERM 4318 3881794 - 3881811 + G 70 -10.5 -3.67622 | overlap 3881790 GAGGATCCCTTCTAT GTCGCCG GGCG CGGCGGC TTCGTTTTGCCGCTG TERM 4319 3882396 - 3882421 + G 77 -5.5 -4.58395 | gap 1, opp_overlap 3882398, overlap 3882398 GTGCGATCTCAAGGA AATGCAGATCCG CGA CGGAT-TGCATG TTTTTGGCGACTCGC TERM 4320 3883867 - 3883829 - g 74 -12.5 -3.53091 | gap 1, overlap 3883816 AGGGCGCCTTCGAAA TGGCGGCGACGGTCGA TTACCTGT TCG-CCTTCGCCGCCA CCGCCCGCGTGGTCA cobN 3880363 - 3884085 + | cobaltochelatase TERM 4321 3884503 - 3884459 - g 70 -10.7 -3.55444 | gap 2 GCTTCACCTGGGAAA CCCAGGACC-GCGAGCGC-GA TATCG CCAGCGCCCGCAAGGCCTGGG AGGTCGCCAAGGGCT Rru_A3367 3884119 - 3884766 + | cob(I)yrinic acid a,c-diamide adenosyltransferase Rru_A3368 3885686 - 3884763 - | LysR family transcriptional regulator Rru_A3369 3885819 - 3886025 + | hypothetical protein TERM 4322 3886275 - 3886295 + G 72 -6.7 -4.18197 | overlap 3886261 GTTGCCTGGGCGCTG GCGCGCGGG CAG TCCTTGCGC TTTTCCCTGCGCGAT TERM 4323 3886372 - 3886407 + G 72 -13.2 -3.1855 | ATCTGCTGATCTATA CGGCCACCGGCCTGCT GCGA AGCGGACTGGTCGCCG TTGCCTGTTCGACCA TERM 4324 3886982 - 3887015 + G 85 -18.2 -2.52464 | CAATCTGTTGATCCT GCGCCGCC-CCGGCGC CGCC GCGCCGGGGGCGG-GC TCGCTTACCACAAGC Rru_A3370 3886203 - 3887057 + | hypothetical protein Rru_A3371 3888044 - 3887067 - | zinc-containing alcohol dehydrogenase superfamily protein TERM 4325 3888649 - 3888691 + G 73 -4 -4.57569 | gap 2 CCCGGTTCGGTCGGG CGGACCGACCGAGGCCCTGG ATACC CCGGTGCAT-GG-CGGACCG TTTTTCCGGGCCTCG Rru_A3372 3888170 - 3888781 + | tRNA/rRNA methyltransferase (SpoU) Rru_A3373 3888915 - 3889436 + | hypothetical protein TERM 4326 3889438 - 3889419 - T 78 -10 -3.93695 | gap 1 GGCACCATTGATAAA GCCT-GCGG GTC CCGCTAGGC GGTGATAAAGCCTGC TERM 4327 3889525 - 3889506 - T 78 -10 -3.87869 | gap 1, opp_overlap 3889516 3889517, overlap 3889507 CTAAGCGGCGATAAA GCC-AGCGG ATC CCGCTAGGC GGCGATCACCCGGTT Rru_A3374 3890998 - 3889520 - | diguanylate cyclase Rru_A3375 3892009 - 3891056 - | glycosyl transferase family protein Rru_A3376 3893321 - 3892023 - | glycosyl transferase, group 1 TERM 4328 3894015 - 3894005 - g 81 -8.2 -4.56597 | overlap 3893985 CTGCGCCTGCAAAAA GCCC TGC GGGC GAGCGATGTGAGCGT Rru_A3377 3893354 - 3894124 + | Alpha/beta hydrolase fold TERM 4329 3894182 - 3894224 + T 73 -10.1 -3.57144 | gap 2, opp_overlap 3894169 3894182 3894187, overlap 3894187 GAGCTTGATAGTCAA GAAAATCGTCGTCGCGATCTG GTC CAGATCGCT-CGG-GATTTTC TTTAGCAGTCCGAGG TERM 4330 3894187 - 3894219 + T 81 -4.2 -4.87803 | gap 2, opp_overlap 3894187 3894182, overlap 3894182 TGATAGTCAAGAAAA TCGTCGTCGCGATCTG GTC CAGATCGCT-CGG-GA TTTTCTTTAGCAGTC Rru_A3378 3895152 - 3894226 - | hypothetical protein TERM 4331 3894695 - 3894657 - G 70 -5.9 -4.1899 | gap 1, overlap 3894658 GCAGCTGATCGAAAA CGCTGCGGCCGG-GGCCA TAGA TGCCGGCCAGCCGCAACA GGTGAACGGGCAGAT Rru_A3379 3895299 - 3896153 + | TPR repeat-containing protein TERM 4332 3896241 - 3896261 + F 70 -3.2 -4.67038 | gap 1, overlap 3896222 3896241 3896242 3896257 CGGGCTTTTCCTTTT G-CCCAGGG CTTT CCCTCGGAC TTTTCGTTTTGCCAA Rru_A3380 3896362 - 3897345 + | hypothetical protein TERM 4333 3897543 - 3897506 - g 81 -12.5 -3.77553 | overlap 3897494 3897507 GAACATGAGCAACAA CGCCGCCGTCACCGCCG ATGG CGGCGAGATCGGCCGCG CCCAGGCCTTGCAGG Rru_A3381 3897342 - 3898832 + | cobyric acid synthase Rru_A3382 3899861 - 3898851 - | adenosylcobinamide-phosphate synthase TERM 4334 3901129 - 3901143 + G 74 -12.8 -3.53091 | CCGCAAGGCCGGAGC GCCCGC GGT GCGGGC TTTGGCGCGCCGCCT TERM 4335 3901367 - 3901377 + G 77 -6.8 -4.56597 | GCCCGCACGCCGCTC GACG CCC CGTC TTTTTCGGGGACGCC Rru_A3383 3900020 - 3901414 + | cobalamin (vitamin B12) biosynthesis CbiG protein Rru_A3384 3901411 - 3902172 + | precorrin-4 C11-methyltransferase TERM 4336 3902244 - 3902271 + F 70 -10.6 -3.53224 | gap 1, overlap 3902246 3902248 GGCGGCGGGGTGAGG TC-GGCGGCCAAG GGG CTTGGCCGTCTGG TTTCGCGGGAGCGTG TERM 4337 3902246 - 3902268 + F 81 -15.6 -2.90496 | overlap 3902244 3902248 CGGCGGGGTGAGGTC GGCGGCCAAG GGG CTTGGCCGTC TGGTTTCGCGGGAGC TERM 4338 3902248 - 3902266 + F 80 -14.6 -3.00525 | overlap 3902246 3902244 GCGGGGTGAGGTCGG CGGCCAAG GGG CTTGGCCG TCTGGTTTCGCGGGA Rru_A3385 3902293 - 3903021 + | OmpA/MotB TERM 4339 3903229 - 3903239 + F 85 -2.4 -5.3104 | CGACGGACCATGATG CCGG GCG CCGC TTTTCTTTTTCCTGC Rru_A3386 3903275 - 3903823 + | BioY protein TERM 4340 3903881 - 3903915 + G 74 -14.9 -3.01712 | gap 1 TGCGGTGATCATCGC CGCCCGCCGAACCGCC GTGG GGCGGA-CGGCGGGCC TGTTCCGGGCGCGCA Rru_A3387 3903858 - 3905018 + | Acetyl-CoA C-acetyltransferase Rru_A3388 3905015 - 3905938 + | 1,4-dihydroxy-2-naphtoate prenyltransferase Rru_A3389 3907000 - 3905963 - | hypothetical protein TERM 4341 3906702 - 3906716 + g 75 -9.2 -4.07568 | opp_overlap 3906701 3906702 TGGGGCAGCACGAAG CGCTCG GCC CGGGCG TTTTCGCGCGCGGCG Rru_A3390 3908420 - 3907005 - | hypothetical protein Rru_A3391 3909714 - 3908632 - | diguanylate cyclase Rru_A3392 3910165 - 3909794 - | hypothetical protein TERM 4342 3910005 - 3910031 + g 82 -17.3 -3.07192 | overlap 3910021 GGGCAAACCCTTTCG GCCTTCGGCGC CTCTT GCGCCGGAGGC TCTCTTCCGGCACTT TERM 4343 3910021 - 3910044 + g 70 -10.2 -3.70037 | overlap 3910005 CCTTCGGCGCCTCTT GCGCCGGAGG CTCT CTTCCGGCAC TTTCCCTACTCCTTG Rru_A3393 3910206 - 3912161 + | penicillin-binding protein 1A Rru_A3394 3912512 - 3912183 - | hypothetical protein TERM 4344 3912524 - 3912510 - G 75 -3.4 -4.7497 | overlap 3912512 TCCACCTAGTAAAAA CACCGG GAT CTGGCG TTCCCCGCATCAAAG TERM 4345 3913035 - 3913021 - g 77 -12.8 -3.62597 | GTGATCCCCGAACAA GGCGGC GAC GCCGCC CGCCGGCTGATCGGC TERM 4346 3913069 - 3913059 - g 72 -6.8 -4.2558 | opp_overlap 3913058 3913049 GATCGGCGAGCAAAA GCAC CTT GTGC ATCTGTTGGCGCTTT Rru_A3395 3912592 - 3913374 + | LuxR family transcriptional regulator TERM 4347 3913443 - 3913433 - f 71 -8.2 -4.08216 | opp_overlap 3913434, overlap 3913434 GTACCCCTGGGAAAA CCCC GGG GGGG ACAATCCCCGGACGT Rru_A3396 3913528 - 3914148 + | autoinducer synthesis protein Rru_A3397 3914148 - 3914399 + | hypothetical protein TERM 4348 3914466 - 3914441 - T 100 -16.1 -4.87133 | ATCGGGTAAAGAAAA GGCCCGGCCTC GCAA GAGGTCGGGCC TTACACAACGTCGAC Rru_A3398 3915040 - 3914498 - | XRE family transcriptional regulator Rru_A3399 3915285 - 3915767 + | BadM/Rrf2 family transcriptional regulator TERM 4349 3916374 - 3916362 - g 70 -2.6 -4.59773 | CCCGATTGGCAAAAA CGCC TGCCC GACG CCTCGTCGCCCTATA Rru_A3400 3915990 - 3917054 + | thiosulphate-binding protein Rru_A3401 3917059 - 3917910 + | sulfate ABC transporter, permease protein CysT Rru_A3402 3917914 - 3918807 + | sulfate ABC transporter, permease protein CysW TERM 4350 3919853 - 3919843 - g 72 -8.2 -4.07568 | opp_overlap 3919825, overlap 3919844 GGCGGGCCTGGAAAA CGGG AAG CCCG GTTGCCCTGGTGCCC Rru_A3403 3918825 - 3919895 + | sulphate transport system permease protein 1 TERM 4351 3920156 - 3920194 + G 74 -12.3 -3.58522 | CCTTGGCCTGCTGGA GGGGTTGGCCCGCCGTC TGGCC GATGGCGGGCGCACGCC TTTGGGACTGATCGT TERM 4352 3920298 - 3920328 + G 71 -12.4 -3.25093 | opp_overlap 3920305, overlap 3920296 GTCGCCCTGGTCGCC GGCACAAGGCGGGG GAT CGCCGCCTCGCGCC TATTGCTTCCCCTCT TERM 4353 3920704 - 3920740 + G 72 -13 -3.14693 | gap 1, overlap 3920702 3920700 GCGGTCTGCGGGTCT TCGCCCGTCCCGCCGAT ATCG ATCTGCGGGCCGG-CGA TGTCTTGCTGCTGGA TERM 4354 3921514 - 3921529 + G 86 -6.1 -5.01732 | overlap 3921503 TGATCGCCGTGGCCA TCGGC GCCTCG GCCGA TTTTTTCACGCCCTT Rru_A3404 3919926 - 3921680 + | TrkA domain-containing protein Rru_A3405 3921784 - 3922902 + | formaldehyde dehydrogenase (glutathione) TERM 4355 3923355 - 3923365 + G 70 -2.4 -4.62471 | overlap 3923354 TTTCCCGATCGATGG GCGC CGG GCGG TTTTTGGGCATTCCA Rru_A3406 3922927 - 3923775 + | carboxylesterase Rru_A3407 3924018 - 3925232 + | 6-phosphofructokinase Rru_A3408 3926280 - 3925222 - | glycosyl transferase family protein TERM 4356 3925843 - 3925823 - G 70 -2.5 -4.66537 | opp_overlap 3925836 3925837, overlap 3925837 3925838 GTGCTCAACAGAAAA GGCGG ATGGATCAAGG CCGCC CAGGCCATTTCGCCA Rru_A3409 3926470 - 3927348 + | hypothetical protein TERM 4357 3927432 - 3927385 - f 85 -15.6 -3.17051 | overlap 3927383 3927386 GCTTGACTATCAATA GCTTAGAGCGGCGTGCCCGA CCCAAATT TCCGGCACGCCGCGCTAAGA CGGGACCAGCCACCC TERM 4358 3927431 - 3927386 - f 88 -19.1 -2.50016 | overlap 3927385 3927383 CTTGACTATCAATAG CTTAGAGCGGCGTGCCCGA CCCAAATT TCCGGCACGCCGCGCTAAG ACGGGACCAGCCACC TERM 4359 3927486 - 3927433 - f 72 -12.9 -3.01924 | opp_overlap 3927435, overlap 3927383 CACGCCGCGCTAAGA CGGGACCAGCCACCCAGGCGGGAAC CCGC GCCCCCGCCCGGGTGGGTGGGGCTC TTCAAGTCACCGCGA TERM 4360 3927435 - 3927484 + F 76 -13.3 -3.05844 | opp_overlap 3927433 CGCCGCGCTAAGACG GGACCAGCCACCCAGGCGGGAAC CCGC GCCCCCGCCCGGGTGGGTGGGGC TCTTCAAGTCACCGC Rru_A3410 3927542 - 3927928 + | hypothetical protein Rru_A3411 3927925 - 3928218 + | XRE family transcriptional regulator TERM 4361 3928272 - 3928319 + T 100 -18.7 -4.49756 | opp_overlap 3928279, overlap 3928273 3928274 GCATCCGTATCGGTT TATTAGAGCATCGAGCGTGAA ATCGGG TTCACGCTCGATGCTCTAAGC TTTTGGTATTTAAGC TERM 4362 3928273 - 3928318 + T 100 -22.2 -3.2913 | opp_overlap 3928279, overlap 3928272 3928274 CATCCGTATCGGTTT ATTAGAGCATCGAGCGTGAA ATCGGG TTCACGCTCGATGCTCTAAG CTTTTGGTATTTAAG TERM 4363 3928274 - 3928317 + T 100 -25.7 -2.56755 | opp_overlap 3928279, overlap 3928273 3928272 ATCCGTATCGGTTTA TTAGAGCATCGAGCGTGAA ATCGGG TTCACGCTCGATGCTCTAA GCTTTTGGTATTTAA TERM 4364 3928312 - 3928279 - T 88 -19.8 -2.78596 | opp_overlap 3928274 3928273 3928272 TATCGGTTTATTAGA GCATCGAGCGTGAA ATCGGG TTCACGCTCGATGC TCTAAGCTTTTGGTA Rru_A3412 3929606 - 3928377 - | amidohydrolase Rru_A3413 3930350 - 3929649 - | ABC transporter component Rru_A3414 3931114 - 3930347 - | ABC transporter component Rru_A3415 3931998 - 3931111 - | inner-membrane translocator TERM 4365 3931427 - 3931401 - G 70 -8.6 -3.89614 | overlap 3931402 TGTAATGGGCATAAA GCGCGCCGGC GAGGCCG GCCGAGGCGC TGCCCAGCACGAAAA Rru_A3416 3932892 - 3932020 - | inner-membrane translocator TERM 4366 3932611 - 3932581 - G 100 -13.2 -4.72272 | GGCGCGCAGGAAAAA GGCCATGCCGATCG AGG CGATCAGCGAGGCC ACCGGCGAGCGTTTG TERM 4367 3932771 - 3932738 - G 73 -15.2 -2.90194 | ACCGGGCCAAGCAGA CCGGCGAAGGCGCC GGCGGT GGCGACATCGCCGG TGGCGGCGTTGGGAA TERM 4368 3932953 - 3932922 - R 83 -15.8 -3.0806 | gap 1 CCCAAAGGTGGAAGA GGCGGGGCGGCCCGC TCG GCG-GCCGCCCCAAC TAAAGGATCAAAGCC Rru_A3417 3934205 - 3932976 - | extracellular ligand-binding receptor TERM 4369 3934005 - 3934050 + g 74 -8.1 -4.18018 | gap 1, opp_overlap 3933993, overlap 3933999 3933998 CAAGGAGGTGCCGCA GGCGCCACCGG-CGGCGTTGAT GTC GTCGACGCCGACCTGAAGGGCC TTTTGCATGCCCGAG Rru_A3418 3934906 - 3934202 - | TetR family transcriptional regulator TERM 4370 3934421 - 3934405 - G 75 -9.3 -4.11216 | GCGTCAGGTTCAAAA CGGTGGC GAT GCCGCCG GGGGCGAGGCTGGTG TERM 4371 3935058 - 3935034 - R 100 -18.6 -4.86731 | TCCGGTCAAAGAAAA GGCCGGCTCC TTGGG GGAGCCGGCC GGCAGGCGATGAAGG Rru_A3419 3936955 - 3935093 - | phosphoenolpyruvate carboxykinase TERM 4372 3935839 - 3935870 + g 77 -2.9 -4.88736 | gap 1, overlap 3935840 AATCGGGGGTCCAGT CCTGGCCC-TTCCA GTCGA TGGCATGGGCCGGC TTTTTCTCGGTCATG TERM 4373 3936182 - 3936192 + g 72 -8.2 -4.07568 | overlap 3936179 GACATAGCGCTTCTC GCCC GTC GGGC TTTTCACGCCAAGGA TERM 4374 3936890 - 3936910 + g 70 -3.9 -4.45068 | opp_overlap 3936880, overlap 3936891 ACACAGGGCCGTCAT GTCCTCGAC CCA GTCGAGAAG TTTCTTGTTGCGGGT TERM 4375 3937026 - 3937043 + r 100 -9.1 -5.14163 | gap 1 AGCGGGATTTGCATC GGGCG-GC ATG GCTCGCCC TTTTTCTTAGTCCCT Rru_A3420 3937862 - 3937050 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TERM 4376 3937923 - 3937935 + H 80 -3.3 -5.10601 | overlap 3937909 CCCGAGGGGGTGTCC CCGGT TGT AACGG TTTTTGTAATTTTGT Rru_A3421 3938560 - 3939135 + | hypothetical protein TERM 4377 3939248 - 3939190 - f 75 -8 -4.1822 | gap 1, opp_overlap 3939195 3939206, overlap 3939191 CGTCAGGTGAAGAAA GGGAC-GGGACCGTTTCGCGGTCGC TGCTATGATG GCGACCGCGTTCCCGTCCCCGTCCG GTGGCAGCTAGAGGA Rru_A3422 3939274 - 3939999 + | two component transcriptional regulator TERM 4378 3940065 - 3940099 + G 75 -9.1 -4.13945 | gap 1, overlap 3940088 CGATTCCACCCAGGA GCCCAAGCGGC-GCCG GCAT CGGCGGCCGCGCGGAC TTTTACGCTCGCCCT TERM 4379 3941139 - 3941128 - g 84 -7.2 -4.81083 | overlap 3941129 CCCAATCAGCAAAAA CGCC TGAT GGCG GTGATCGTCGATGAC Rru_A3423 3940024 - 3941718 + | periplasmic sensor Signal transduction histidine kinase Rru_A3424 3941818 - 3942561 + | orotidine-5'-phosphate decarboxylase TERM 4380 3942626 - 3942648 + G 77 -5.5 -4.63486 | TGCCGCCGTCGAAGC CGGGGTCGA CATGA TCGGCTTCG TTTTCTTCGAGCCCT TERM 4381 3942904 - 3942930 + G 74 -10.1 -3.86346 | gap 1, opp_overlap 3942887 CCCTGCCGATCGCCA GCGCCG-CCGAT CTGG AGCGGGCGGCGC TTTATGCCGAGGTCG Rru_A3425 3942558 - 3943214 + | N-(5'-phosphoribosyl)anthranilate isomerase Rru_A3426 3943221 - 3944513 + | hypothetical protein TERM 4382 3944631 - 3944621 - f 74 -6.8 -4.36914 | opp_overlap 3944582, overlap 3944578 3944623 3944624 CGGGGCCGCATAAAA GAGC GGC GCTC TTGGCGCCGGGTGAT Rru_A3427 3944688 - 3945914 + | tryptophan synthase subunit beta Rru_A3428 3945911 - 3946726 + | tryptophan synthase, alpha chain TERM 4383 3946784 - 3946733 - T 84 -10.9 -4.05788 | gap 3, opp_overlap 3946734 3946737 3946761, overlap 3946729 3946728 3946734 3946736 GCGGGGTAAATCAAA TCACCC-GCGCCCGGAGAGCG-GC TGTTTTG GCTCG-TCCCCGGGCGCCGGGCGC GATGCCTGATCTAGG TERM 4384 3946783 - 3946734 - T 80 -14.4 -3.03151 | gap 3, opp_overlap 3946734 3946737 3946761, overlap 3946729 3946728 3946733 3946736 CGGGGTAAATCAAAT CACCC-GCGCCCGGAGAGCG-GC TGTTTTG GCTCG-TCCCCGGGCGCCGGGCG CGATGCCTGATCTAG TERM 4385 3946780 - 3946736 - T 76 -13.6 -3.0693 | opp_overlap 3946734 3946737 3946761, overlap 3946729 3946728 3946734 3946733 GGGTAAATCAAATCA CCCGCGCCCGGAGAGCG-GC TGTTTTG GCTCG-TCCCCGGGCGCCGG GCGCGATGCCTGATC TERM 4386 3946794 - 3946840 + T 100 -20.5 -4.30576 | GGGCGCGATGCCTGA TC-TAGGGCGGGGAGCGTGCAAT CAG ATT-CACGCTCCCCGTCCTACGA TTTTGATAGTCAAGC Rru_A3429 3947471 - 3946899 - | hypothetical protein TERM 4387 3947594 - 3947610 + H 100 -13.7 -4.58395 | opp_overlap 3947594 TAAGGGGGGCCGAAA CTGCCCG GTG CGGGCAG TTTTTGCCCGGTCAG TERM 4388 3947610 - 3947594 - H 86 -13.7 -3.53761 | opp_overlap 3947594 TAAGGGGGGCCGAAA CTGCCCG GTG CGGGCAG TTTTTGCCCGGTCAG TERM 4389 3948062 - 3948048 - g 71 -2.8 -4.61527 | overlap 3948050 AAAACCGGCGAAAAA GACG CGATCAT CGTC GGTCATGGCAAGCTG Rru_A3430 3947643 - 3948767 + | acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha TERM 4390 3949835 - 3949850 + G 72 -11.8 -3.61178 | opp_overlap 3949809 3949807 TCCTTGGCGCCCTGG CGCCGC TGGT GCGGCG TTTGCGGTGCGTGGC Rru_A3431 3948781 - 3950088 + | folylpolyglutamate synthetase Rru_A3432 3951616 - 3950093 - | hypothetical protein TERM 4391 3951741 - 3951760 + r 78 -13.6 -3.14132 | opp_overlap 3951741 TTGCCCAAACGAAAA CGGCCCTT CGCA AAGGGCCG TTCGTCAGGCGGGGA TERM 4392 3951760 - 3951741 - R 100 -13.6 -4.54727 | opp_overlap 3951741 TTGCCCAAACGAAAA CGGCCCTT CGCA AAGGGCCG TTCGTCAGGCGGGGA Rru_A3433 3952102 - 3951788 - | thioredoxin Rru_A3434 3955835 - 3952272 - | UvrD/REP helicase TERM 4393 3952439 - 3952470 + g 73 -12.2 -3.4072 | opp_overlap 3952441, overlap 3952445 AGGCGATGTCGACCA GATCCACCGCGCGC GGCG GCGGGCGGTTGGTC TTGTAATCGACGATC TERM 4394 3953274 - 3953247 - G 70 -12 -3.40403 | gap 1, opp_overlap 3953211 3953252 GCTTGGGCACCAGAA CGGC-AGGGCGTC GGC GACGCCCTTGTCG GCGGTCCACAGCAAC TERM 4395 3953252 - 3953268 + g 75 -13.7 -3.30124 | opp_overlap 3953247, overlap 3953211 GGCACCAGAACGGCA GGGCGTC GGC GACGCCC TTGTCGGCGGTCCAC TERM 4396 3953465 - 3953452 - G 93 -4.5 -5.31877 | gap 1, overlap 3953453 AGCCACGACAAAAAA CCCTGC AGG GC-GGG CGGACCGACGCGTTC TERM 4397 3955042 - 3955030 - G 70 -10.5 -3.6502 | GACGGCCCATCGAAA GCGCC CTC GGCGC AGCCGTCGGCCAGAA TERM 4398 3955170 - 3955135 - G 85 -13.2 -4.07568 | gap 1, overlap 3955136 TCGGCGCCGCCAAAA TGGTCGAGCGCGGCCAG CAG CCGGCCGCGCT-GCCCG CCCAGGGCCGCCATC TERM 4399 3955169 - 3955136 - G 79 -16.7 -3.04398 | gap 1, overlap 3955135 CGGCGCCGCCAAAAT GGTCGAGCGCGGCCAG CAG CCGGCCGCGCT-GCCC GCCCAGGGCCGCCAT Rru_A3435 3958888 - 3955832 - | hypothetical protein TERM 4400 3958041 - 3958013 - G 90 -2.3 -5.40072 | gap 1, opp_overlap 3958019 3958020, overlap 3958014 3958015 GGTTTCGGAAAAAAA CCTCACGGCCTG GCGCGA CAGGCCCAG-GG TGTCGAGCAGGCGTT Rru_A3436 3959714 - 3958953 - | nucleotidyl transferase TERM 4401 3959766 - 3959743 - R 100 -10.2 -5.0538 | gap 1, overlap 3959744 CGTTATCTTAAAAAA GCCCGCGC-CC TCA GGCGAGCGGGC GGGAAAGCGGGTGGG TERM 4402 3959769 - 3959744 - R 73 -10.3 -3.62746 | overlap 3959743 GTTATCTTAAAAAAG CCCGCGCCCTC AGGC GAGCGGGCGGG AAAGCGGGTGGGGAT Rru_A3437 3960835 - 3959753 - | aminoglycoside phosphotransferase TERM 4403 3960397 - 3960408 + g 75 -7.2 -4.3467 | overlap 3960388 3960380 GGTCGGCGGGCAGGC CCCG CGCC CGGG TTTTGGTGTGAAGCT Rru_A3438 3961329 - 3960832 - | hypothetical protein TERM 4404 3962350 - 3962378 + G 72 -11.7 -3.53224 | GATGTGGCGAGCTAT CCGGGCAAGCTCA AGC TGATCTTGACCGG TTTCGCCGAAGCCTC Rru_A3439 3961453 - 3962490 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Rru_A3440 3962698 - 3962516 - | hypothetical protein TERM 4405 3962617 - 3962588 - G 73 -11.3 -3.64703 | gap 1 TTGGCGCCAGCGAAA GCTCGCCGTCGCCG GGG CGGCTTCGGCG-GC GGGCGGCGGCGGGCC Rru_A3441 3963327 - 3962713 - | PadR family transcriptional regulator Rru_A3442 3964728 - 3963697 - | transposase IS116/IS110/IS902 TERM 4406 3963775 - 3963799 + g 100 -19.3 -3.14931 | CACCGTGGCCAACTT GCGGGCCAGGG CCA CCTTGGCCCGC TTCATGCCGCGTCGC TERM 4407 3964900 - 3964861 - R 84 -12 -4.08216 | gap 1, opp_overlap 3964884, overlap 3964862 3964864 TGACCCCTTTTAAAA GGAGGGCGGCGGC-CGCCG CCG CTTCACGCCGCCGCCCTCA GCCCGAGGTGGGGAT TERM 4408 3964899 - 3964862 - R 83 -15.5 -3.04715 | gap 1, opp_overlap 3964884, overlap 3964861 3964864 GACCCCTTTTAAAAG GAGGGCGGCGGC-CGCCG CCG CTTCACGCCGCCGCCCTC AGCCCGAGGTGGGGA TERM 4409 3964897 - 3964864 - R 72 -12.3 -3.08032 | gap 1, opp_overlap 3964884, overlap 3964862 3964861 CCCCTTTTAAAAGGA GGGCGGCGGC-CGCCG CCG CTTCACGCCGCCGCCC TCAGCCCGAGGTGGG Rru_A3443 3967303 - 3964898 - | PAS/PAC sensor Signal transduction histidine kinase TERM 4410 3966172 - 3966137 - G 71 -12.6 -3.34894 | gap 1, opp_overlap 3966169, overlap 3966135 3966169 AAGCTTGGTGAAATA GCCCAGTTCGCCGGCCT TAT AGGCCGG-GAAATCGGC GACCTCGGGCAGGCG TERM 4411 3966965 - 3966907 - G 70 -10.1 -3.73106 | GCAAAAGGTCAAGAA CGAAGCCCCGGCCCTCGCGGCGCA-GCAC GGC GATCATGC-CTTCGAGGGCCTGGGCGTCG CCTTCGGCGAAAACG TERM 4412 3967459 - 3967421 - R 100 -19.7 -3.53012 | gap 1, opp_overlap 3967421, overlap 3967370 3967422 CCCCCGCCGGCGAAA GCGCCAACGGCCCCTTCC TTGC GGAAGGGGCCGTCAGC-C AAGCGGAGTCGGGCG TERM 4413 3967459 - 3967422 - R 95 -19.9 -2.71712 | opp_overlap 3967421, overlap 3967370 3967421 CCCCGCCGGCGAAAG CGCCAACGGCCCCTTCC TTGC GGAAGGGGCCGTCAGCC AAGCGGAGTCGGGCG TERM 4414 3967491 - 3967481 - R 81 -4.6 -5.00884 | AGTCGGGCGAAAAAA GGCC CGG AGCC GTATGAGGTCCTAGT Rru_A3444 3968905 - 3967502 - | S-adenosyl-L-homocysteine hydrolase TERM 4415 3967768 - 3967743 - G 73 -15.5 -2.52516 | gap 1, overlap 3967742 GCGCTCATGACGAAG CTGGGGTG-GCC GGT GGCGCACCCCAG GTTCACCAGCCGGCC TERM 4416 3968992 - 3969023 + r 81 -8 -4.65895 | gap 1, opp_overlap 3968988 3968985 3968990 CTTATCAAGTAGATT TTAGCC-GAGGGCGA AAG TCTCCCTCAGGCCAA TTTTTCGCTGACGCG Rru_A3445 3970838 - 3969015 - | phosphoenolpyruvate--protein phosphotransferase TERM 4417 3969138 - 3969150 + g 77 -3.3 -4.86731 | GACATCGATCATCGA CAGCC GGC GGATG TTTTGTTTGACCCGC TERM 4418 3970657 - 3970678 + g 75 -4.3 -4.66537 | overlap 3970644 AGCCGGGCGCATTCG TCTTCGACG CGGG CGGCGGGGA TTTTGTATTCGGGAA Rru_A3446 3971166 - 3970828 - | HPrNtr TERM 4419 3971341 - 3971362 + r 76 -10.1 -3.74792 | CCCGCAAGCCCTTTT GGTCGCGAT TCCC ATCGCGTCC TTTGGATATATGGTC Rru_A3447 3971829 - 3971425 - | PTS system fructose subfamily IIA component Rru_A3448 3972886 - 3971870 - | hypothetical protein Rru_A3449 3973428 - 3972943 - | Hpr(Ser) kinase/phosphatase TERM 4420 3973357 - 3973333 - G 70 -10 -3.62597 | gap 1, opp_overlap 3973340 CGGACCGCGCAATAA CACCGCCCAGC CATC GC-GGGCGATG GCGGTTCCATGAACC TERM 4421 3973551 - 3973571 + G 83 -8.9 -4.63218 | overlap 3973534 TGGCAGGGGTTTGCT CGGCCGGGG TTT TCTTGGCCG TTTTCTTGGGGCGGG TERM 4422 3973580 - 3973609 + G 76 -15.7 -2.87564 | gap 1 TTGGCCGTTTTCTTG GGGCGGG-GTGGCT GCT GGCCGCGCCCGCCC TCTCTCCCGCCCTGG Rru_A3450 3973519 - 3974589 + | ribonuclease T2 Rru_A3451 3974778 - 3975164 + | hypothetical protein TERM 4423 3976470 - 3976486 + G 71 -9.3 -3.76224 | CAGCGCCGGCTTGGC CGACCGG GTT CCGGCCG TTTCCTCGATGGGGA Rru_A3452 3975253 - 3977352 + | TonB-dependent receptor TERM 4424 3977557 - 3977503 - f 75 -7.6 -4.17048 | opp_overlap 3977522, overlap 3977522 CCCCGCGCAAAAGAA GGCCAAGGGGGCCGGAAAACGCCCGA TCC TCCGGCGTTTCCCGGATCCGCCCCCC TTGCCTGCTTGAAAC TERM 4425 3977538 - 3977522 - f 71 -7.9 -4.08064 | opp_overlap 3977522, overlap 3977503 AAGGGGGCCGGAAAA CGCCCGA TCC TCCGGCG TTTCCCGGATCCGCC TERM 4426 3977592 - 3977622 + F 78 -16.2 -2.52464 | gap 1 TTCCCGCCCGCGTGG GCG-CGCTCCCCG CCTCCT CGGGGAGCGTCGC TCCCTTCGCCCGAAA TERM 4427 3977725 - 3977737 + F 73 -10.5 -3.64716 | overlap 3977723 CACTGCCGTTAATTT GGGCG ATA CGCCC TCTTTTCCCCAATCC Rru_A3453 3977768 - 3978595 + | ABC transporter component Rru_A3454 3978585 - 3979481 + | binding-protein dependent transport system inner membrane protein TERM 4428 3979925 - 3979952 + G 75 -9 -4.11216 | CTGGCCCTGGCCTGT GATCGCGTGCCG TTCC TGGCGCGCGGCC TTTTGCCGATCGCCA TERM 4429 3980148 - 3980200 + G 91 -12.5 -4.1891 | gap 1 TGATGCGCAGCTATG CGGC-GGGCTGGGGGCGGACCCTG GTGCTG CTGCGCCTGCCCGCGGCCCTGCCG TTTCTGTTCAACGGC Rru_A3455 3979478 - 3980446 + | binding-protein dependent transport system inner membrane protein TERM 4430 3980433 - 3980457 + F 95 -15 -4.09685 | gap 1, opp_overlap 3980408 ATTGGCATCCATCGG CCGGCG-GGCG CTGA CGCCGCGCCGG TTTTCCCAGATCAAC Rru_A3456 3980536 - 3981546 + | hypothetical protein TERM 4431 3981578 - 3981603 + F 100 -15.5 -5.252 | gap 1 GCCTTGACTTCGCCA CGGACCGGC-TC GAC GATGCCGGTCCG TTTTTTATCACGATC TERM 4432 3982071 - 3982097 + G 70 -2.1 -4.58395 | gap 1, opp_overlap 3982063, overlap 3982073 3982073 GATGAAGGGGGCTGC GACCCTGGC-CG ATAT CGAGCCGGCGGC TTTTTCCGCCCTCGA Rru_A3457 3981631 - 3983094 + | hypothetical protein Rru_A3458 3983091 - 3983552 + | GCN5-related N-acetyltransferase Rru_A3459 3983616 - 3983879 + | hypothetical protein TERM 4433 3985134 - 3985156 + G 70 -13.4 -3.01712 | opp_overlap 3985123 CAAGGTGGCGGTCGA GGCCTATGGC GGC GCCATCGGCC TGTTGCCGCGCGAGG TERM 4434 3985278 - 3985310 + G 71 -12.7 -3.28924 | gap 1 GGCGATCGAGGCCTA TCGGG-CGGCGCTG GAAGCG CTGCGCCGTCCCGA TTGTCCGCGCGAATG Rru_A3460 3983992 - 3985926 + | cyclic nucleotide-binding domain-containing protein TERM 4435 3986591 - 3986613 + G 71 -3.4 -4.59773 | gap 1, overlap 3986555 CTGGCAGATGATGCC CG-AGGTGC GCGACA GCGCCTGCG TTTTTGGCCATACGG Rru_A3461 3985923 - 3987440 + | carbohydrate kinase, FGGY TERM 4436 3988306 - 3988294 - g 83 -4.7 -5.03314 | overlap 3988295 CGCATGGGCAAAAAA GGGCC GAT GGCCG GTAGTCTCGAACTGA Rru_A3462 3987694 - 3988326 + | cold-shock DNA-binding protein family protein TERM 4437 3988340 - 3988390 + F 75 -8.4 -4.2558 | gap 1, overlap 3988347 GACGCTTTCCCCTGG TT-TTTGACCCTATGGGTGGTGC CGGCGC GCGCCACCCATAGGGTTGTCCAA TTTTGATCACGGCTG TERM 4438 3988347 - 3988382 + F 100 -21.3 -3.42768 | overlap 3988340 TCCCCTGGTTTTTGA CCCTATGGGTGGTGC CGGCGC GCGCCACCCATAGGG TTGTCCAATTTTGAT TERM 4439 3988592 - 3988634 + F 78 -2.7 -5.10461 | opp_overlap 3988592 GGTCTTGATAGGCAA GCGAATCGTCATCGC GATATGGTCCGGG GCGCTGGAGATTCGC TTTTTATTCAATAGG Rru_A3463 3988728 - 3989015 + | AsnC family transcriptional regulator Rru_A3464 3989302 - 3989826 + | transcriptional regulator Rru_A3465 3989843 - 3991102 + | methyl-accepting chemotaxis sensory transducer TERM 4440 3991156 - 3991132 - T 100 -15.7 -4.70659 | TCGCACAGCGAAAAA CCCCCCGGC ATGGGGG GCCGGGGGG TAAGGAGTCTTTGGT rocD 3992444 - 3991197 - | ornithine--oxo-acid transaminase Rru_A3467 3993342 - 3992458 - | amidinotransferase TERM 4441 3993460 - 3993440 - H 76 -7.5 -4.56969 | AATGCCAGAAATAAA GCAGTATGC TAG GCATCCCGC GCAAACTGTCAGAGC Rru_A3468 3993521 - 3993946 + | AsnC family transcriptional regulator Rru_A3469 3994775 - 3994065 - | hypothetical protein Rru_A3470 3995530 - 3994913 - | hypothetical protein Rru_A3471 3996211 - 3995618 - | RecR protein Rru_A3472 3996563 - 3996240 - | hypothetical protein Rru_A3473 3998539 - 3996560 - | DNA polymerase III subunits gamma and tau Rru_A3474 3999287 - 3998802 - | bacterioferritin Rru_A3475 3999485 - 3999910 + | cysteine desulfuration protein SufE Rru_A3476 4000803 - 3999922 - | LysR family transcriptional regulator Rru_A3477 4000911 - 4002128 + | major facilitator transporter Rru_A3478 4003848 - 4002091 - | diguanylate cyclase TERM 4442 4002648 - 4002610 - G 77 -6.7 -4.57073 | gap 2 CATGTCGTCGAAAAA CGC-CCGGC-GGTTGAGCA GGC CGGTCAACCCGTCGGTGCG CGACATGGAGATGAT TERM 4443 4003408 - 4003389 - G 74 -5.6 -4.54727 | opp_overlap 4003394, overlap 4003384 CGGGGGAAACGAAAA CGAAGCGG CCGT CCGGTCCG GTTTCCCAGGTGAAG dapD 4004094 - 4004945 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase Rru_A3480 4004973 - 4006187 + | succinyl-diaminopimelate desuccinylase Rru_A3481 4006181 - 4006780 + | hypothetical protein Rru_A3482 4006938 - 4007453 + | MarR family transcriptional regulator Rru_A3483 4007437 - 4009071 + | major facilitator transporter TERM 4444 4009605 - 4009589 - g 72 -4.4 -4.52589 | opp_overlap 4009589 4009596 CCCTGGTACACAAAA GCCAAG CCGCC CTTGAC GTTTCCCGCGAGGAT Rru_A3484 4009075 - 4010139 + | secretion protein HlyD Rru_A3485 4011627 - 4010182 - | hypothetical protein TERM 4445 4011680 - 4011690 + H 89 -6.8 -5.13521 | AAAATTTTACTGACC GGGT CAG ACCC TTTTTTAGCTGATTT Rru_A3486 4011827 - 4012207 + | hypothetical protein Rru_A3487 4012361 - 4014292 + | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase Rru_A3488 4014437 - 4014958 + | translation initiation factor 3 TERM 4446 4015070 - 4015031 - T 100 -18 -4.09243 | gap 1, opp_overlap 4015038, overlap 4015035 4015038 TACACGTGCCTAAAA TACAC-GAGGGGCCGTCCC GCC AGGACGGCCCCTTGGTGTA TCGGCAGCGACCGCC TERM 4447 4015065 - 4015035 - T 95 -19 -3.39908 | opp_overlap 4015038, overlap 4015031 4015038 CGTGCCTAAAATACA CGAGGGGCCGTCCC GCC AGGACGGCCCCTTG GTGTATCGGCAGCGA TERM 4448 4015062 - 4015038 - T 88 -19.3 -2.85585 | opp_overlap 4015038, overlap 4015035 4015031 GCCTAAAATACACGA GGGGCCGTCCC GCC AGGACGGCCCC TTGGTGTATCGGCAG TERM 4449 4015038 - 4015062 + T 95 -18.6 -3.32022 | opp_overlap 4015038 4015035 4015031 GCCTAAAATACACGA GGGGCCGTCC CGCCA GGACGGCCCC TTGGTGTATCGGCAG Rru_A3489 4016529 - 4015087 - | hypothetical protein TERM 4450 4016249 - 4016261 + g 95 -6.9 -5.47159 | opp_overlap 4016236, overlap 4016250 AACTTGGGCCACTCG TCGCC GAA GGCGG TTTTTATTTCTTCCA TERM 4451 4016477 - 4016453 - G 70 -10.7 -3.54459 | opp_overlap 4016476 GCAAGGCGGCGCAAA GCCTCGGCC ACCCACA GGCCGAAGC GGCTTGGCCGGCGTC Rru_A3490 4017432 - 4016581 - | metallophosphoesterase TERM 4452 4017624 - 4017603 - R 100 -15.9 -4.48987 | TCTCTACAATTAAAA GGGGATCGC AGAG GCGATCCCC CAAAATACCTCATCC Rru_A3491 4017987 - 4017769 - | hypothetical protein Rru_A3492 4021258 - 4018133 - | Cache sensor hybrid histidine kinase TERM 4453 4019933 - 4019910 - G 70 -5.9 -4.17048 | GCGGTCTGAAAATAA GACCCGGAG GCGATG CGCCGGATC ATGGCGTTCAGCGCC TERM 4454 4020840 - 4020817 - G 75 -4.4 -4.66537 | opp_overlap 4020831, overlap 4020818 4020819 TTCCGGAATAGAAAA GCGCGGCGGA CCCC TCGGGCGCAC CGGTGCTGTACAACA TERM 4455 4021829 - 4021845 + G 75 -9.3 -4.07568 | opp_overlap 4021828 4021827 CGCCCGGGCACAAGC GCACGGG CTT CCCGAGC TTTTGGAGCGGACGG Rru_A3493 4021545 - 4021904 + | Hpt domain-containing protein Rru_A3494 4021982 - 4023163 + | diguanylate phosphodiesterase TERM 4456 4023395 - 4023373 - f 71 -6.8 -4.26076 | opp_overlap 4023381, overlap 4023374 CTATCTGCATCAAAA GCGCCCGATC CCT GGCCGGGCGG GGGGCTTTGCCACAA Rru_A3495 4023502 - 4023855 + | hypothetical protein TERM 4457 4023877 - 4023862 - T 77 -3.2 -4.87133 | overlap 4023864 AGGCGCTAAAGAAAA TCCCGA GCGA TCTGGA CCGGAGTCCAGACAC TERM 4458 4023919 - 4023956 + T 78 -13.4 -3.15861 | opp_overlap 4023914, overlap 4023921 CCTATCAAGACGGTG GCGCGCCGAGCGGGAA CCAAGC TTCCCGCTCGCTGCTC TTGATCACAATCCTG TERM 4459 4023921 - 4023954 + T 82 -14.6 -3.14051 | opp_overlap 4023914, overlap 4023919 TATCAAGACGGTGGC GCGCCGAGCGGGAA CCAAGC TTCCCGCTCGCTGC TCTTGATCACAATCC Rru_A3496 4026214 - 4024109 - | chemotaxis sensory transducer TERM 4460 4024803 - 4024830 + g 70 -11.2 -3.5393 | opp_overlap 4024803, overlap 4024804 GCGGCGGCGATCAGA TCGGCGACGCCG CGTC CGGCCTCGTCGG TTTCGCCGGCCTCGT TERM 4461 4025049 - 4025064 + g 70 -10.4 -3.72576 | AAAACGGCGACCGCC TCGGCC ATGC GGCCGA TTTCATCGCGACGCC TERM 4462 4025834 - 4025863 + g 74 -14.9 -3.06796 | opp_overlap 4025794 CGCGGCTTCGGCCAG CGCGCGGAAGCGG GCCA CCGCCTCGGCGCG TTCGGTGGCGTAGGA TERM 4463 4026274 - 4026246 - H 75 -8.2 -4.21408 | gap 2 AACGGGAAAATGAAA CGACGCGCCCAGCG ATA CGCTGG-C-CATCG GGTTGGCGCGGACCG Rru_A3497 4026475 - 4027008 + | disulphide bond formation protein DsbB TERM 4464 4027459 - 4027435 - g 82 -11.4 -4.07568 | CCTGCTTGGCGAAAA GGCGGCGATG GCCTG CACCACCGCC ATCGAAGAGGCGATC Rru_A3498 4027043 - 4027681 + | ubiquinone biosynthesis protein COQ7 Rru_A3499 4028227 - 4027700 - | hypothetical protein Rru_A3500 4028931 - 4028296 - | cobalt transport protein CbiM Rru_A3501 4029768 - 4028971 - | putative lipoprotein Rru_A3502 4030033 - 4030488 + | hypothetical protein Rru_A3503 4030546 - 4031010 + | glyoxalase/bleomycin resistance protein/dioxygenase Rru_A3504 4032260 - 4031019 - | putative phenylacetate-CoA ligase Rru_A3505 4033149 - 4032304 - | ABC transporter component TERM 4465 4032472 - 4032493 + g 79 -7.2 -4.63218 | opp_overlap 4032469 ATAGCCGTAAGAGGC CGCCCCCA GCGCCA TGCGGGCG TTTTGTTCGACGACC TERM 4466 4032758 - 4032787 + g 70 -6.4 -4.18494 | gap 2, opp_overlap 4032737, overlap 4032759 ACGGCGGGCGCCCCG TC-GCGGC-GGGTG AAGG CGCCCAGCCGCAGG TTTTCGATCACCGTC TERM 4467 4033171 - 4033218 + r 76 -9.7 -4.11183 | gap 1, opp_overlap 4033196 CTCCTCGTCGCCAAG CGGGGGAGGC-CGGCGGGGG ATAAAAGCG CCCCCGCCGGGTCGCGGCCG TTGTTTCTAATAACC TERM 4468 4033213 - 4033196 - R 77 -8.3 -4.36914 | opp_overlap 4033171 CGGCGGGGGATAAAA GCGCCCC CGCC GGGTCGC GGCCGTTGTTTCTAA Rru_A3506 4034451 - 4033225 - | putative branched-chain amino acid transport system substrate-binding protein TERM 4469 4034474 - 4034488 + r 76 -7 -4.5187 | GTAACCTCCCGGAAC GGACCC TTC GGGCCC TTTGGTTTTTTTAAA Rru_A3507 4035648 - 4034527 - | inner-membrane translocator Rru_A3508 4036546 - 4035653 - | inner-membrane translocator TERM 4470 4036100 - 4036079 - G 70 -3.7 -4.55446 | overlap 4036080 4036081 GAAGAAATAGTAAAA GCCGATCAT GATA ATGATCGAG ATGGCGAAGCTCATC TERM 4471 4036579 - 4036591 + r 83 -4.7 -5.10029 | overlap 4036561 4036567 4036580 TGCGCGCCTTGCGGC GGCGC CCG GAGCC TTTTTTCGGCTTCCT Rru_A3509 4038600 - 4036633 - | AMP-dependent synthetase and ligase TERM 4472 4037560 - 4037503 - G 75 -3.1 -4.78661 | gap 1, overlap 4037505 4037559 ATGGAAAAACGAAAA GGTCTCCGGCCCCATCGCC-GCGCCGCC GGT GGCGGCGCTGGTCAGGAAGGAAAAGCCC AAGCGGTCGCGCAAG TERM 4473 4038041 - 4038097 + g 72 -14.2 -3.03124 | opp_overlap 4038051 CCCGCCGCCACCTCG CGCTCGTAAAGCCCGGGGTCGCGGGC GTCGA GGGCGCGGCCCCGGGCCTTGAGGTCG TCTTGCGAAATCAGC TERM 4474 4038087 - 4038051 - G 86 -16.4 -3.53012 | opp_overlap 4038041 CCTCGCGCTCGTAAA GCCCGGGGTCGCGGGC GTCGA GGGCGCGGCCCCGGGC CTTGAGGTCGTCTTG Rru_A3510 4039424 - 4038600 - | ABC transporter component TERM 4475 4039459 - 4039481 + H 71 -5.4 -4.3534 | CGGCCGCTCTTCCCC CCGGACTCGT TAG ACCGGACCGG TTTTGGTGGTTGAGC TERM 4476 4040027 - 4040015 - g 75 -9.1 -4.11216 | overlap 4040018 TGTCGACTGGCAAAA GGACC GCC GGTCC GACCGCGAAATCGCC Rru_A3511 4039803 - 4042478 + | aconitate hydratase TERM 4477 4042492 - 4042527 + F 100 -10.4 -5.42259 | opp_overlap 4042499, overlap 4042494 4042495 GAGACGACGACCCGC TAACGAAGGGCCCC CTGAGCGC GGGGCCCTTCGCTC TTTTTTTCCCGCTGG TERM 4478 4042494 - 4042525 + F 100 -13 -4.35085 | opp_overlap 4042499, overlap 4042492 4042495 GACGACGACCCGCTA ACGAAGGGCCCC CTGAGCGC GGGGCCCTTCGC TCTTTTTTTCCCGCT TERM 4479 4042495 - 4042524 + F 85 -16.5 -3.19966 | opp_overlap 4042499, overlap 4042494 4042492 ACGACGACCCGCTAA CGAAGGGCCCC CTGAGCGC GGGGCCCTTCG CTCTTTTTTTCCCGC TERM 4480 4042865 - 4042885 + G 71 -13.9 -2.91264 | GGGCTCAGTTGATCG CCCGCGCCC TTG GCGCGCGGG TGTATCCCTCCGGGA TERM 4481 4042929 - 4042905 - g 73 -14.4 -3.14132 | opp_overlap 4042910, overlap 4042910 TCCCTCCGGGATCAA GGAAATCGGC GTCTT GCCGATTTCC TTAAGCGCCGCCGGG TERM 4482 4043049 - 4043067 + G 74 -7.4 -4.18018 | GCTGGCCTCGACCCC GGCCTG CGCCCAT CAGGCC TTTTCCCTAGGCCGC Rru_A3512 4042588 - 4043313 + | glutamine amidotransferase Rru_A3513 4045097 - 4043340 - | chemotaxis sensory transducer TERM 4483 4043911 - 4043923 + g 74 -10.5 -3.77241 | overlap 4043914 TCGGCCTGACGCACG GCGCC GCG GGCGC TTTCGCTTGAGGTTT TERM 4484 4047045 - 4047002 - g 79 -6.7 -4.63218 | overlap 4047011 CCGGGGGCAAGAAAA GCCGCAAGACCGGGGCGT-GG TCGA CCGACGCCCAGGTGCTG-GAC CAATTGGCCGCCGAG Rru_A3514 4045237 - 4048011 + | DNA polymerase A Rru_A3515 4048032 - 4048742 + | LytR/AlgR family transcriptional regulator Rru_A3516 4048865 - 4049170 + | hypothetical protein Rru_A3517 4050473 - 4049187 - | major facilitator transporter Rru_A3518 4051434 - 4050517 - | 2-dehydropantoate 2-reductase TERM 4485 4051400 - 4051355 - G 81 -8.9 -4.5442 | gap 1 GGGCGAACCAGAAAA GTGAC-ATCGCGGCCGGCGGCC AGC AGCCGTCCGCCGAAATAGCCAC CAATGCCCCCCGCAC TERM 4486 4051495 - 4051475 - R 76 -10.4 -3.73775 | gap 1 GCCATGGTTAGGAAA CGGCCGCCG AGGA CGG-GGCCG CAGGAGGGGGCCGAG Rru_A3519 4051958 - 4051467 - | MarR family transcriptional regulator Rru_A3520 4053367 - 4052063 - | hypothetical protein TERM 4487 4052106 - 4052093 - G 75 -9.5 -4.14243 | overlap 4052094 GACCTGATCGGAAAA CGGCC GGCG GGCCG AGAGGAACTCGCCGA Rru_A3521 4053441 - 4053638 + | 50S ribosomal protein L35P rplT 4053693 - 4054070 + | 50S ribosomal protein L20 TERM 4488 4054146 - 4054121 - f 100 -17.5 -3.794 | opp_overlap 4054121 CGCTAACGGACCAAA CGGGGGTCGCC ACGG GGCGGCCCCCG TTTTTCTTGCGCCCG TERM 4489 4054121 - 4054146 + F 100 -19.7 -5.06414 | opp_overlap 4054121 CGCTAACGGACCAAA CGGGGGTCGCC ACGG GGCGGCCCCCG TTTTTCTTGCGCCCG TERM 4490 4054684 - 4054705 + G 74 -2.1 -4.72272 | gap 1 TCCGCCCGGCCATCC GGCG-CGCGC CAT GCACGACACC TTTTTCCTGCCGACC Rru_A3523 4054235 - 4055311 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 4491 4055471 - 4055522 + G 70 -10 -3.6581 | gap 1, opp_overlap 4055464, overlap 4055469 4055472 TCATCGAAGCCGGCC CCCATCCCGATGCCGAC-CGGCTGA AGC TCTGCCGGGTCGATAGCGGGACGGA TATTTTGCAGATCGT TERM 4492 4056497 - 4056511 + G 74 -12.8 -3.53012 | GCGAGCTGGTGATCG CCGGCG CCC CGCCGG TTTGGCGGCGCACCA Rru_A3524 4055308 - 4057710 + | phenylalanyl-tRNA synthetase beta subunit TERM 4493 4057740 - 4057785 + T 100 -16.9 -4.07568 | overlap 4057745 CCGGATCGGAGAGGC CCTTAGAGGGGTGTGGGTGAC CTAT GTCGCTCACACCCCTCTTGGA TTTTCACAGGGGAGC TERM 4494 4057745 - 4057780 + T 100 -22 -3.36823 | overlap 4057740 TCGGAGAGGCCCTTA GAGGGGTGTGGGTGAC CTAT GTCGCTCACACCCCTC TTGGATTTTCACAGG Rru_A3525 4058458 - 4057820 - | hypothetical protein Rru_A3526 4058807 - 4058466 - | hypothetical protein Rru_A3527 4059117 - 4058818 - | hypothetical protein TERM 4495 4059424 - 4059461 + r 100 -14.9 -4.83169 | gap 1, opp_overlap 4059426 4059431, overlap 4059425 4059426 4059431 GTGTTCCGATAATTA AAGAAAACCCGCC-CCGG GAT CCGGTGGCGGGTTTTCCG TTTTTATCCGACCGT TERM 4496 4059425 - 4059460 + r 100 -18.4 -3.49419 | gap 1, opp_overlap 4059426 4059431, overlap 4059424 4059426 4059431 TGTTCCGATAATTAA AGAAAACCCGCC-CCGG GAT CCGGTGGCGGGTTTTCC GTTTTTATCCGACCG TERM 4497 4059459 - 4059426 - R 100 -21.9 -3.9941 | gap 1, opp_overlap 4059426 4059425 4059424 4059431, overlap 4059431 GTTCCGATAATTAAA GAAAACCCGCC-CCGG GAT CCGGTGGCGGGTTTTC CGTTTTTATCCGACC TERM 4498 4059426 - 4059459 + r 100 -21.9 -2.6933 | gap 1, opp_overlap 4059426 4059431, overlap 4059425 4059424 4059431 GTTCCGATAATTAAA GAAAACCCGCC-CCGG GAT CCGGTGGCGGGTTTTC CGTTTTTATCCGACC TERM 4499 4059431 - 4059454 + r 100 -16 -4.5115 | gap 1, opp_overlap 4059426 4059431, overlap 4059426 4059425 4059424 GATAATTAAAGAAAA CCCGCC-CCGG GAT CCGGTGGCGGG TTTTCCGTTTTTATC TERM 4500 4059454 - 4059431 - R 100 -16 -5.02357 | gap 1, opp_overlap 4059431 4059426 4059425 4059424, overlap 4059426 GATAATTAAAGAAAA CCCGCC-CCGG GAT CCGGTGGCGGG TTTTCCGTTTTTATC Rru_A3528 4060126 - 4059560 - | hypothetical protein TERM 4501 4059608 - 4059629 + g 75 -13.1 -3.41051 | TTCATCGACCCGCCC GCTGGTGAA GATC TTCACCAGC TTGTCGTCGCGCTGG Rru_A3529 4061621 - 4060257 - | inner-membrane translocator TERM 4502 4061505 - 4061460 - G 75 -9 -4.07687 | gap 3, overlap 4061434 4061461 ATCGGCGGTGGAAAA GCTGGCGC-GGTCGAGGATCGCC ACC GGCG--CCTCGGCCGGCACCAGG GCGAGCAGGGCGCGC TERM 4503 4062568 - 4062521 - g 70 -13.2 -3.01712 | CCCGCTTTGGTAAGA TCGGCCGGGCGCTGCACGCCCA CGCC TGGGGGCGGGGCGGCCGGACGA TCAGCCCCGATCGCG TERM 4504 4062804 - 4062821 + G 77 -9.8 -3.90112 | overlap 4062809 CCGGGCCGAGGTGAT CGCCGG CGCCGC CCGGCG TTTGCTTGAACGCGA Rru_A3530 4061767 - 4063032 + | DNA polymerase IV Rru_A3531 4063544 - 4062993 - | nitrogen-fixing NifU-like Rru_A3532 4064205 - 4063648 - | hypothetical protein TERM 4505 4064159 - 4064139 - G 71 -12.5 -3.21747 | CGACGCCATCATGAA CCCCCTCGG CGA CGGAGGGGG GGGAGGCAAGGGGGG Rru_A3533 4065228 - 4064242 - | hypothetical protein TERM 4506 4064611 - 4064584 - G 78 -6.1 -4.59773 | overlap 4064586 CTTCAGCCGCAAAAA GGCGTCGCGGA ACACCG CCCGCGTCGGC GCGTCATAGAAATCG TERM 4507 4065009 - 4064984 - G 89 -10.3 -4.46212 | overlap 4064986 CCCCCCAGCAGAAAA GTCGCCAGGGC GCAG ACCCCGGCGGC GCGGCGGGCAAGGCG Rru_A3534 4066174 - 4065221 - | hypothetical protein TERM 4508 4066201 - 4066234 + r 72 -13.3 -2.52464 | gap 1, opp_overlap 4066201 4066205, overlap 4066205 CCCCGCTGGAAGCGA TGAAGTCTGG-CGAAG CAA CGTCGGCCAGACTTCA TCGGTTCCGGAGAGC TERM 4509 4066234 - 4066201 - R 72 -13.3 -2.52464 | gap 1, opp_overlap 4066201 4066205, overlap 4066205 CCCCGCTGGAAGCGA TGAAGTCTGG-CGAAG CAA CGTCGGCCAGACTTCA TCGGTTCCGGAGAGC Rru_A3535 4067269 - 4066271 - | tryptophanyl-tRNA synthetase TERM 4510 4067889 - 4067903 + G 71 -9.2 -3.75933 | overlap 4067901 CGCCGCCCTGGACGT GCCCGC CGA GTGGGC TTTCGTGGCCTATCT Rru_A3536 4067377 - 4068012 + | cob(II)yrinic acid a,c-diamide reductase Rru_A3537 4068264 - 4068560 + | transcription regulator Rru_A3538 4070098 - 4068557 - | virulence factor MVIN-like TERM 4511 4069505 - 4069489 - G 70 -6.5 -4.2772 | overlap 4069499 GGCAATGAACATAAA GCCACAG GAA CTGCAGC ACGCCGGCCAGCGAC Rru_A3539 4073003 - 4070193 - | PII uridylyl-transferase TERM 4512 4072377 - 4072412 + g 76 -8.8 -4.20806 | opp_overlap 4072378, overlap 4072378 CTTGGCCTCGACGAA ATCGGGGCCGGTGCCG GTGA CGACGCCGGTCCAGAA TTTGGTTTTAAGCTG TERM 4513 4072411 - 4072378 - G 70 -10.1 -3.72576 | opp_overlap 4072377 4072378 TTGGCCTCGACGAAA TCGGGGCCGGTGCCG GTGA CGACGCCGGTCCAGA ATTTGGTTTTAAGCT TERM 4514 4073099 - 4073067 - H 70 -3.1 -4.60797 | overlap 4073069 CCCCCACATATAAAA CCCCCGCCCCCAAGG TTC CACAGGGATCGGGCG GTTGGCTTGGTTTAG Rru_A3540 4073211 - 4073651 + | hypothetical protein Rru_A3541 4076546 - 4073757 - | DNA mismatch repair protein TERM 4515 4075755 - 4075770 + g 70 -6 -4.2349 | CCCGAACAGGCCCTC CACCCG CTTG CGGGCG TTTTCGCTATCGAAG Rru_A3542 4076906 - 4079167 + | malic enzyme TERM 4516 4080482 - 4080523 + G 70 -10.8 -3.57263 | opp_overlap 4080494 4080495 GACCGAACGCTTCTA CCGG-GTCGACAAGGCGCGC TCGC GCGCGC-TCGGCGGCACCGG TTTGGGGCTGGCCAT Rru_A3543 4079235 - 4080671 + | periplasmic sensor Signal transduction histidine kinase Rru_A3544 4080716 - 4081486 + | phosphate uptake regulator, PhoU TERM 4517 4082036 - 4082056 + G 73 -6.1 -4.4078 | gap 1, overlap 4082029 4082028 CTGCGCTTCGCCGTG GCCG-CGG CGCTGA CCGGCGGC TTTTCGTTGACGGAC TERM 4518 4082514 - 4082524 + G 88 -8.2 -4.89852 | TCTGCCTGGGGCTGG CCGC CTT GCGG TTTTTGTGGGTCTGG Rru_A3545 4081538 - 4083178 + | Na+/H+ antiporter Rru_A3546 4083456 - 4085642 + | anthranilate synthase Rru_A3547 4085730 - 4086077 + | hypothetical protein TERM 4519 4086278 - 4086232 - f 72 -2.7 -4.84527 | opp_overlap 4086248 TGGAGACACGAAAAA CGCTTGCCCCGCCCCCTTTCC TCGCC GGGAACGCGGCGGGAGATCCG TTGCGCGGGAGCCCT Rru_A3548 4086296 - 4087903 + | magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase TERM 4520 4087962 - 4087904 - f 89 -17.4 -3.19293 | gap 2, opp_overlap 4087910, overlap 4087907 AAGGTGAAGATCTAA GGACGGTCCCCGCCCCCCCGGCCTCGCC AAAAA AGCG-GGCCGGGGGGGCGGGAATT-TGC ATGATCGCTTTTTCC TERM 4521 4087960 - 4087907 - f 95 -20.2 -2.7898 | gap 1, opp_overlap 4087910, overlap 4087904 GTGAAGATCTAAGGA CGGTCCCCGCCCCCCCGGCCTCGCC AAAAA AGCG-GGCCGGGGGGGCGGGAATTT GCATGATCGCTTTTT TERM 4522 4087910 - 4087957 + F 100 -27.8 -3.69094 | gap 1, opp_overlap 4087907 4087904 AAGATCTAAGGACGG TCCCCGCCCCCCCGGCCTCGC CAAAAAA GCG-GGCCGGGGGGGCGGGAA TTTGCATGATCGCTT Rru_A3549 4088074 - 4089624 + | cobyric acid synthase TERM 4523 4089702 - 4089678 - g 71 -3.3 -4.57569 | overlap 4089679 TCAGCGGCTGAAAAA CCCCCACCCCC TCC GGGCGCGCGGC CTGATGCTGCAGGGC TERM 4524 4089868 - 4089825 - g 71 -9.5 -3.77553 | gap 1, overlap 4089818 GAACATGAGCAACAA CGCCGCCGTGACCCTTGATG GCGAG CATCC-GGGCCAGCGCGGCG AAATCGGCCGGGCCC Rru_A3550 4089637 - 4091178 + | cobyric acid synthase Rru_A3551 4091243 - 4092145 + | aldo/keto reductase Rru_A3552 4092326 - 4092189 - | hypothetical protein Rru_A3553 4092580 - 4092326 - | hypothetical protein TERM 4525 4092770 - 4092732 - R 90 -14.6 -3.64822 | gap 1, opp_overlap 4092733 4092734 4092737, overlap 4092733 ACCGCCTGATCGAAA CGCGACCGGCCCTCGCC TGGGCG GGCGAGAGCCGGTTG-G TTTTATCAAAAAGGC TERM 4526 4092733 - 4092770 + r 100 -15.5 -4.36914 | opp_overlap 4092732 4092733, overlap 4092734 4092737 CCGCCTGATCGAAAC GCGACCGGCCCTCGCCT GGGC GGGCGAGAGCCGGTTGG TTTTATCAAAAAGGC TERM 4527 4092770 - 4092733 - R 77 -14.8 -2.78679 | opp_overlap 4092733 4092734 4092737, overlap 4092732 CCGCCTGATCGAAAC GCGACCGGCCCTCGCC TGGGCG GGCGAGAGCCGGTTGG TTTTATCAAAAAGGC TERM 4528 4092734 - 4092769 + r 91 -19 -3.21934 | opp_overlap 4092732 4092733, overlap 4092733 4092737 CGCCTGATCGAAACG CGACCGGCCCTCGCCT GGGC GGGCGAGAGCCGGTTG GTTTTATCAAAAAGG TERM 4529 4092737 - 4092766 + r 100 -17.1 -3.75115 | opp_overlap 4092732 4092733, overlap 4092734 4092733 CTGATCGAAACGCGA CCGGCCCTCGCCT GGGC GGGCGAGAGCCGG TTGGTTTTATCAAAA TERM 4530 4092797 - 4092783 - R 73 -4.9 -4.72272 | overlap 4092784 TGGTTTTATCAAAAA GGCCG GGGAT CAGCC GGCGATGTCTTCCCA Rru_A3554 4093958 - 4092792 - | heat shock protein DnaJ TERM 4531 4093830 - 4093860 + g 82 -6.1 -4.82667 | GGGATTGCGGTCCGG GTGATACCGCATG GCGAG CGTGCGGTAGGAC TTTTTGATCTCGTCG TERM 4532 4094011 - 4093994 - R 77 -4.1 -4.88217 | overlap 4093996 AGGAAAAAACGAAAA GTCGG CGGGGGGT CCGAC GGCATCAAAGAAAGG TERM 4533 4094073 - 4094025 - R 76 -7.2 -4.49958 | opp_overlap 4094025 4094033 4094072, overlap 4094035 ACGGCATCAAAGAAA GGCGGAGAAACGGGGACCGGAG GAAAG CTCCGGTCCCCGCCTGATATCC CCTTAGTGGCCTTTT TERM 4534 4094033 - 4094065 + r 76 -14.8 -2.64973 | opp_overlap 4094025 4094035, overlap 4094025 AAAGAAAGGCGGAGA AACGGGGACCGGAG GAAAG CTCCGGTCCCCGCC TGATATCCCCTTAGT TERM 4535 4094063 - 4094035 - R 100 -21.8 -3.91473 | opp_overlap 4094033 4094025, overlap 4094025 AGAAAGGCGGAGAAA CGGGGACCGGAG GAAAG CTCCGGTCCCCG CCTGATATCCCCTTA Rru_A3555 4095995 - 4094076 - | molecular chaperone DnaK TERM 4536 4096169 - 4096141 - H 75 -8 -4.18197 | overlap 4096142 AGGGGCGATGGAAAA CCTCGCAACGGG GCGAT CCCGCCGCGCGA TCGGGGATTGACACC Rru_A3556 4096343 - 4096594 + | hypothetical protein TERM 4537 4096711 - 4096736 + G 77 -11.2 -3.7941 | gap 1 CTTCGGCCCGTGGTT CCTCGCCCGTC TGGCC GA-GGGCGAGG TTGTTGTACCCAATC Rru_A3557 4096655 - 4097560 + | hypothetical protein Rru_A3558 4097786 - 4098538 + | hypothetical protein TERM 4538 4098568 - 4098588 + T 100 -18.3 -5.33405 | opp_overlap 4098565 ACCTTTCAAGGATCA GGCCCGGGA CCC TCCCGGGCC TTTTTCTTTGGTCGC Rru_A3559 4099319 - 4098609 - | heat shock protein DnaJ-like TERM 4539 4099469 - 4099459 - R 71 -6.8 -4.18018 | CGCGTGTAGCCAAAA GTCG AGA CGAC GTCAACGGGGATTGG Rru_A3560 4102326 - 4099471 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4540 4100541 - 4100525 - G 72 -5 -4.49311 | AGCAGCACCAGAAAA CGGTCC CCCCC GGCCCG ACAGACGATCGACCC TERM 4541 4101027 - 4101013 - G 75 -11.4 -3.71848 | opp_overlap 4101000 4100999 4101021 GGCGCCGAGGAACAA CTCGCC ATC GGCGAG AAGGGCCTCGGGGGT TERM 4542 4101095 - 4101085 - G 86 -4.6 -5.1356 | opp_overlap 4101092, overlap 4101093 GCTGACGAACAAAAA GCGC AAG ACGC CTTCGGCGGTCAATT TERM 4543 4101702 - 4101737 + g 70 -11.2 -3.57144 | gap 1, overlap 4101702 4101705 CCGAACAGATGGCCA G-GGTTTGCGCCGACTG GCG CAGTCGGCGCAGATAGC TTTCGCGATCGGCCC TERM 4544 4101705 - 4101733 + g 93 -19.7 -2.64803 | overlap 4101702 4101702 AACAGATGGCCAGGG TTTGCGCCGACTG GCG CAGTCGGCGCAGA TAGCTTTCGCGATCG Rru_A3561 4104205 - 4102466 - | ABC transporter, transmembrane region TERM 4545 4103252 - 4103228 - G 70 -11.3 -3.59262 | GGTCACATCGTCAAA GCGCACGGTTC CCG GACCCGGGCGC AGCGGCGGCGCCCCG Rru_A3562 4104480 - 4105529 + | hypothetical protein TERM 4546 4105561 - 4105587 + T 100 -15.2 -4.39571 | overlap 4105544 4105544 GAGGGCGCGGCGGCG GGGCTCTTCCCT TAT AGGAAAGAGCCC TTTTGCGTTTGTGCC Rru_A3563 4107317 - 4105626 - | chemotaxis sensory transducer TERM 4547 4107858 - 4107841 - H 77 -3.5 -5.00616 | gap 1, opp_overlap 4107841, overlap 4107853 TTGTTTTTGAAAAAA TACACACT AAT AG-GTGTA TTTTTCACCGGGGTT TERM 4548 4108025 - 4107986 - H 72 -11.4 -3.33696 | opp_overlap 4107989 4107993, overlap 4107961 4107989 4107993 CTTTTTGCCAACCAA CGACGAAGGGCCCTTCCC TGTG GGGAAGAGCCCTTTGTTT TTGCTTAGGAAACTG TERM 4549 4107989 - 4108022 + H 100 -17.5 -4.8622 | opp_overlap 4107961 4107986 4107989 4107993, overlap 4107993 TTTGCCAACCAACGA CGAAGGGCCCTTCCC TGTG GGGAAGAGCCCTTTG TTTTTGCTTAGGAAA TERM 4550 4108022 - 4107989 - H 85 -17.5 -2.84098 | opp_overlap 4107989 4107993, overlap 4107961 4107986 4107993 TTTGCCAACCAACGA CGAAGGGCCCTTCCC TGTG GGGAAGAGCCCTTTG TTTTTGCTTAGGAAA TERM 4551 4107993 - 4108018 + H 100 -14.7 -4.96773 | opp_overlap 4107989 4107986 4107993, overlap 4107989 CCAACCAACGACGAA GGGCCCTTCCC TGTG GGGAAGAGCCC TTTGTTTTTGCTTAG TERM 4552 4108018 - 4107993 - H 93 -16.9 -3.30554 | opp_overlap 4107993 4107989, overlap 4107989 4107986 CCAACCAACGACGAA GGGCCCTTCCC TGTG GGGAAGAGCCC TTTGTTTTTGCTTAG Rru_A3564 4108262 - 4108843 + | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase TERM 4553 4108893 - 4108934 + T 95 -18.9 -3.41229 | gap 1, opp_overlap 4108879 4108897, overlap 4108897 ATGCTGATCGTCACG CAAATCGCCGTCGCCCTCTG GGT CAGAGGGCT-CGGTGATTTG TTCTCATCGGCCTAT TERM 4554 4108930 - 4108897 - T 77 -11.7 -3.65351 | gap 1, opp_overlap 4108893 4108897 TGATCGTCACGCAAA TCGCCGTCGCCCTCTG GGT CAGAGGGCT-CGGTGA TTTGTTCTCATCGGC TERM 4555 4108897 - 4108930 + T 100 -13.9 -4.35483 | gap 1, opp_overlap 4108897, overlap 4108893 TGATCGTCACGCAAA TCGCCGTCGCCCTCTG GGT CAGAGGGCT-CGGTGA TTTGTTCTCATCGGC Rru_A3565 4109704 - 4108946 - | rhomboid-like protein TERM 4556 4109570 - 4109548 - G 71 -3.2 -4.58283 | overlap 4109550 CAAGGCCGTGAAAAA GATCGGCGGG AAT CGCCCCGAAC ATCAGCACGAAGGCC TERM 4557 4109641 - 4109673 + g 85 -16.3 -3.38559 | opp_overlap 4109641, overlap 4109633 4109644 CGGCGAGGCATAAAA CAATCAGGCCGATGG TGA CCACCGGCCTGATCG TTGTCGGATTATCAT TERM 4558 4109673 - 4109641 - G 100 -20.7 -4.42386 | opp_overlap 4109633 4109641 4109644 CGGCGAGGCATAAAA CAATCAGGCCGATGG TGA CCACCGGCCTGATCG TTGTCGGATTATCAT TERM 4559 4109644 - 4109670 + g 79 -16.6 -2.85061 | opp_overlap 4109641, overlap 4109641 4109633 CGAGGCATAAAACAA TCAGGCCGATGG TGA CCACCGGCCTGA TCGTTGTCGGATTAT Rru_A3566 4111101 - 4109800 - | HemY-like TERM 4560 4110559 - 4110529 - G 77 -12.4 -3.70773 | opp_overlap 4110556 CTGCAGACGGAACAA CGTCGCCGTCGCCC AGG GGGCATCGACGCCG GTCGCCACCGCCTCG Rru_A3567 4113310 - 4111106 - | uroporphyrinogen III synthase HEM4 TERM 4561 4112275 - 4112298 + g 83 -13.2 -3.78022 | gap 1 CGCCGGCCTCGCCCG CCGAT-CCGCC ATA GGCGGCATCGG TTTCGTCGGTCTCGA TERM 4562 4112835 - 4112806 - G 78 -6.3 -4.58236 | overlap 4112801 4112800 GAGAAAACAGGAAAA CCGCCGGCATCGA TCGT TCGACGAAAGCGG TTTTCAACTCTTTGG TERM 4563 4112873 - 4112856 - G 81 -8.3 -4.57341 | overlap 4112857 AACTCTTTGGAAAAA GCCGCGG CCGG CCGCGCC TCGTAAAGGCGCTCC TERM 4564 4113091 - 4113050 - G 89 -17.3 -3.54424 | gap 1 GCGCACGTCGGGAAA GCCATAGGCCGAGGCCACCG TGC CGGTGGTCTCG-CCAACGGC ATAGACCGGCAGCCG TERM 4565 4113278 - 4113235 - G 85 -5.1 -5.06816 | opp_overlap 4113262 4113277, overlap 4113259 AGGGTTCAAGAAAAA CGTCG-GCACCCCGCGCGCGC AAGA GCGCGC-CGATGCGATCGGCG TCTTCCAAAGGACGT Rru_A3568 4114310 - 4113345 - | porphobilinogen deaminase TERM 4566 4113798 - 4113812 + g 79 -11.4 -3.85817 | CATGGTGGCATCGGC CTCGCC GCG GGCGAG TTTGTCCAGCCGGGT TERM 4567 4114454 - 4114415 - H 80 -11.2 -3.737 | gap 1, opp_overlap 4114409 CAAGTTGTGACGAAA CCGCCGCCG-CGGTGGTCG AAC CGGCCGCCGACGGGCGCGG TGGGCGAATTATGGC TERM 4568 4115434 - 4115386 - g 81 -15.2 -3.61356 | gap 1 ACCATGGACTTCAAA CCCCGCCCGCGCTGGCCGC-TCG ACCC CGACGCGCCCAAGGCGGCCGGAG CCGGAGGCGTAAAAG Rru_A3569 4114465 - 4115454 + | O-sialoglycoprotein endopeptidase Rru_A3570 4115518 - 4115961 + | hypothetical protein gpsA 4116028 - 4117077 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 4569 4117223 - 4117238 + F 72 -11.8 -3.32727 | overlap 4117219 CTGCCGCTCTCCCCT CCCGCC GCCC GGCGGG TTGGTATGCTGTTCC Rru_A3572 4117341 - 4117631 + | YciI-like protein Rru_A3573 4117656 - 4118063 + | hypothetical protein TERM 4570 4118082 - 4118110 + G 70 -10.9 -3.55444 | overlap 4118084 ATGGCCGCCGCCCGG TCCGTCCAGGCGC TGT GCGCCTTGGCCGA TTTGGGCGATCCGGG Rru_A3574 4118067 - 4118420 + | Rieske (2Fe-2S) region TERM 4571 4118478 - 4118462 - f 72 -10.9 -3.27774 | TACGCCAACGATCAA TTCCGCT GAA AGCGGAA ACATTAGTGAAAAAA TERM 4572 4118944 - 4118979 + G 87 -16.8 -3.38584 | overlap 4118975 TGATCCCCGAGGCGG CGGTGGCGATGCTGGC CTGC GCCCGCATCGGCGCCG TTCATTCCATCGTGT Rru_A3575 4118508 - 4120448 + | acetyl-coenzyme A synthetase TERM 4573 4120480 - 4120503 + F 100 -17.4 -4.18197 | opp_overlap 4120474 4120471 ACCCAAGCAGGCGAG GGGCCGGGCG GCAA CGTCCGGCCC TTTTCGCTGACGGCT TERM 4574 4120615 - 4120627 + G 70 -10.5 -3.72576 | TGACCACTCTCGTTA CCGGC ACC GCCGG TTTCATCGGCAGCCA TERM 4575 4121122 - 4121132 + G 70 -2.4 -4.61633 | ACCAGTTGCCGTCAA CCGC ACT GCGC TTTTTCACCGTCTAT Rru_A3576 4120599 - 4121606 + | UDP-glucuronate 5'-epimerase Rru_A3577 4122465 - 4121611 - | hypothetical protein Rru_A3578 4122675 - 4122478 - | hypothetical protein TERM 4576 4123131 - 4123113 - g 85 -13.8 -4.14392 | CCGCAATCCGCAAAA CGCCGCCG TGG CGGCGACG ACCGGGCTGATGCGG TERM 4577 4123263 - 4123275 + G 75 -9.1 -4.08557 | overlap 4123247 CGCCATCTCGATGCT GGCGA ATT TCGCC TTCTTCTTTGGCGGC Rru_A3579 4122796 - 4123677 + | heat shock protein HtpX TERM 4578 4123681 - 4123703 + T 76 -10.4 -3.83026 | overlap 4123666 CCCTGGGGCTGAGCG GCGGGCGGGC TCA GCCCCCGCGC TTTGATCTGGCGAGC Rru_A3580 4124575 - 4123691 - | hypothetical protein TERM 4579 4123939 - 4123974 + g 89 -16.9 -3.55563 | CCAGGGCCAGCACCG CCAGCCATTGGCCCG CCCCCT CGGGCCAGTGGGTGG TTTCAAAGATCAGGT TERM 4580 4124468 - 4124447 - G 84 -7.3 -4.77036 | CGCCATCAGCAAAAA GGCGATG GTGAAGCT CATCGCC GTCAACTGGAAGGGC Rru_A3581 4124976 - 4124686 - | pterin-4-alpha-carbinolamine dehydratase Rru_A3582 4125076 - 4125483 + | hypothetical protein TERM 4581 4125490 - 4125512 + F 89 -9.8 -4.62203 | opp_overlap 4125488 GACGACTAAATGACT GGGCGGTGAT AGG GTCACCTCCC TTTTCCTTATTTCAG TERM 4582 4125845 - 4125878 + G 100 -21.1 -3.34192 | gap 1 TCCCCTGCGCCCGAC CCCCTTGCGCCTGCCC GCC GGGCGGGC-CAAGGGG TTCCTTGCGGCCGTT TERM 4583 4127315 - 4127331 + G 80 -9.4 -4.18161 | overlap 4127307 CGACGAGGTGGTCGA GGCCTG CGACA CAGGCC TTTTCCACGTTTATC Rru_A3583 4125543 - 4127525 + | ATP-dependent protease-like Rru_A3584 4128370 - 4127543 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 4584 4127736 - 4127716 - G 75 -9 -4.10453 | overlap 4127705 GAAAGGCGGCCAAAA CGCCGATG GCCAG CATCAGCG GCAGCACATAGACGT TERM 4585 4127930 - 4127894 - G 70 -10 -3.63991 | GATCATCGGCAACAA CACCAGACCGGCCGCC GCCGG GGCGGGCACCCCGGTG AAATAGTTATAGGCC TERM 4586 4128096 - 4128079 - G 93 -9.1 -4.84918 | TCCATAAATACAAAA GCATCGC CGGG GCGACGC CGAAGCAGACGAAAT Rru_A3585 4129080 - 4128370 - | phosphatidylserine decarboxylase-related protein TERM 4587 4129244 - 4129227 - R 74 -6.2 -4.56597 | overlap 4129229 CGGGTCCGGCAAAAA CGCCCC TTTAGG GGGACG AGGTGGCCGGGGGGC Rru_A3586 4130292 - 4129234 - | peptidoglycan-binding LysM TERM 4588 4129624 - 4129673 + g 71 -9.1 -3.80573 | gap 1, opp_overlap 4129617 GTTATCAAGATAGGC GCGCACGCT-GTCGCCGGGCGCCG CCG TGCCGCCCACCGACAATCGTCCGC TTTCATCGTAATCGA TERM 4589 4130021 - 4129986 - G 90 -19 -3.01712 | gap 1, opp_overlap 4129976 4130014 4130014 GCTCGTCGCGCAAGA TCACCGCCGCCCCGGGC TCG GCCCGGC-CGGCGGCGA CCAGGGCGCCATCCT TERM 4590 4130138 - 4130181 + g 78 -14.4 -3.57561 | gap 1 GGACCAGGGGCGGGG CCGGGG-GTGGCGCCAGGGCC CGG GGCCAGGGCGCCGGACCTCGG TTTGGGGGCTTCGGG Rru_A3587 4131249 - 4130407 - | hypothetical protein Rru_A3588 4131714 - 4132463 + | cytochrome B561 TERM 4591 4132948 - 4133000 + G 75 -14.2 -3.28712 | gap 3, overlap 4132949 CAGCGATCGCGGGCT GGTCTGCCCG--GCCGCCCAGGGCG GCGAGG CGGCCTGGGCGGCTTCGGGC-GACG TTCTGGCCCCGGCCG TERM 4592 4132949 - 4132999 + G 85 -17.7 -2.57132 | gap 3, overlap 4132948 AGCGATCGCGGGCTG GTCTGCCCG--GCCGCCCAGGGCG GCGAGG CGGCCTGGGCGGCTTCGGGC-GAC GTTCTGGCCCCGGCC Rru_A3589 4132544 - 4134064 + | Mg chelatase-related protein Rru_A3590 4134121 - 4134765 + | hypothetical protein TERM 4593 4134755 - 4134770 + T 71 -7.5 -4.18506 | opp_overlap 4134765 GCCCGGCCAACGCGG GCGCC AAATAG GGCGC TTGTTTTAGAAATAC Rru_A3591 4135495 - 4134776 - | hypothetical protein Rru_A3592 4135965 - 4135603 - | histidine triad (HIT) protein Rru_A3593 4136343 - 4135990 - | phosphoribosyl-ATP pyrophosphatase Rru_A3594 4137175 - 4136417 - | imidazole glycerol phosphate synthase subunit HisF Rru_A3595 4137917 - 4137192 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Rru_A3596 4138623 - 4137979 - | imidazole glycerol phosphate synthase subunit hisH TERM 4594 4138017 - 4138031 + g 75 -7 -4.38712 | overlap 4138003 4138015 TGGCGATCAGGCGCA GCCCGG CGG CCTGGC TTTTCTCGGGATGGA TERM 4595 4138750 - 4138760 + r 71 -8.2 -4.11484 | CGTCTTCCGGCTGGC CCGC GCA GCGG TTTTAGCAGGTTGGC Rru_A3597 4139531 - 4138932 - | imidazoleglycerol-phosphate dehydratase TERM 4596 4139568 - 4139551 - H 80 -9.9 -4.08945 | AGTATTTCTCCAAAA GCATCCT AGTC AGGATGC GGTAAATGGGCGGAA TERM 4597 4139932 - 4139953 + G 79 -2.9 -5.06816 | gap 1 ATACGATATTTCGAA GGTT-CTGGG CGT CCCGGTGGCC TTTTTCTTCGAAGAT TERM 4598 4139987 - 4140005 + G 75 -11.7 -3.62522 | opp_overlap 4139970 4139985 GGCGACGAAGTGACT TCGGCGC GACTG GCGCCGA TTGTTCCCGACATTA Rru_A3598 4139711 - 4140181 + | XRE family transcriptional regulator TERM 4599 4140237 - 4140182 - f 74 -12.5 -3.14132 | opp_overlap 4140168, overlap 4140232 TCCGGGCGGGACTAA CCCGGTCTTGCCGGCCGG-CCCGGGCT CCCA AGCCCCGGTCCGGCCGATAAG-CCGCC GCACCCCCCCCCGGT TERM 4600 4140316 - 4140345 + F 89 -9.9 -4.67556 | GTGTTTTCACCCGCC CCTCCGACGCC CCTTGACC GGCGACGGGGG TTTTTCCCATGTTGT TERM 4601 4140639 - 4140609 - g 72 -13.2 -3.16668 | CAATACGGTGATGAA GGCCAATGCCCGCA AGG TGCGGCCGCTGGCC GGCGGCTCGGTGATC Rru_A3599 4140475 - 4141038 + | ATP-dependent protease peptidase subunit TERM 4602 4141819 - 4141792 - g 71 -12.6 -3.31199 | overlap 4141790 4141783 4141793 ATGAAATCGACAAGA TCGCCACGGCGT CGGA ACGCCGGGGCGG CGACGTCAGCCGCGA TERM 4603 4141818 - 4141793 - g 77 -16.1 -2.57996 | overlap 4141792 4141790 4141783 TGAAATCGACAAGAT CGCCACGGCGT CGGA ACGCCGGGGCG GCGACGTCAGCCGCG hslU 4141035 - 4142342 + | ATP-dependent protease ATP-binding subunit Rru_A3601 4142739 - 4142365 - | XRE family transcriptional regulator Rru_A3602 4143326 - 4142736 - | Smr protein/MutS2-like Rru_A3603 4143987 - 4143313 - | hypothetical protein TERM 4604 4143943 - 4143905 - G 74 -12.3 -3.5394 | gap 1, overlap 4143893 AAACGGGCGCGCAAA GCCTCGGCCGCCGCCCCC GTCA GGGGGCCACGGC-GCAGC CCGCGGCGGATCGAG TERM 4605 4144073 - 4144127 + r 72 -12.7 -3.01712 | gap 1, opp_overlap 4144047 TGCGGGAACCCTGGT CGCCGCTCG-CCGCTCCCCGACTCAC CGCG GTCCGTCGGTGAACGGTCGGGCGTCG TGTTCACCGACCCCC Rru_A3604 4144705 - 4144094 - | hypothetical protein TERM 4606 4144364 - 4144354 - G 73 -4 -4.67038 | GCCGCAAAAGGAAAA GATA GGC TATC GACGTGAAGATCAAA Rru_A3605 4146120 - 4144702 - | Iron-sulfur cluster binding protein Rru_A3606 4146945 - 4146133 - | hypothetical protein TERM 4607 4147089 - 4147104 + r 74 -11.8 -3.53444 | opp_overlap 4147088 4147089 CCCATTGGGCAGAAT GGCCCG ATGG CGGGCC TTTGACAAGAAATCC Rru_A3607 4148321 - 4147125 - | murein degrading transglycosylase protein Rru_A3608 4148991 - 4148332 - | hypothetical protein TERM 4608 4149050 - 4149064 + H 88 -2.1 -5.47399 | gap 1 CTATCCGCCGCGTAC CACCGG CCAT CCG-TG TTTTTTTGGCCTTAG Rru_A3609 4149201 - 4149764 + | FxsA cytoplasmic membrane protein TERM 4609 4149805 - 4149767 - f 71 -6.4 -4.17523 | AAAGAAGTCCTAAAA GGGGCCCGACAGCTTCCC CCC GGCGGGCGGTTGAGCCCC CGGGTCCATCGTGAT Rru_A3610 4149880 - 4150362 + | preprotein translocase subunit SecB TERM 4610 4150379 - 4150424 + T 76 -14.7 -2.50016 | overlap 4150378 4150377 CTTCTCCTCTCCCGG GTTGGAGCGGTGCGTGGGA CATCTGGT TCCCCCACACCGCTCCACC ATCTTGATCGTCAAG Rru_A3611 4151209 - 4150517 - | DNA polymerase III, epsilon subunit Rru_A3612 4151891 - 4151202 - | dephospho-CoA kinase TERM 4611 4151938 - 4151926 - R 71 -6.9 -4.18762 | overlap 4151927 AAGGTTTACCCAAAA CCGCG GCG CGCAG CGCGTCGTCAACCTC Rru_A3613 4152760 - 4151909 - | shikimate 5-dehydrogenase Rru_A3614 4153365 - 4152757 - | Maf-like protein TERM 4612 4152977 - 4152940 - G 79 -6.9 -4.59853 | opp_overlap 4152952 4152953, overlap 4152941 GTAATCTTCCAAAAA GGCGTCGGAAAAGGACC GCAT GGTCATTTTCGGCCGCG CCAGATGGTGCCAGA Rru_A3615 4154189 - 4153362 - | hypothetical protein Rru_A3616 4154681 - 4155727 + | uroporphyrinogen decarboxylase TERM 4613 4155767 - 4155823 + F 77 -8 -4.4267 | gap 2, overlap 4155762 4155768 4155775 GGCCTCGGGTCCGAG AGGTAT-A-TCGGTCGTTTTCCAGCCCC TGG GGGGCTGGAAGGCGGCCGTCTTGGACCC TTTTCGCTTTTGGCC TERM 4614 4155775 - 4155813 + F 100 -25.4 -3.06009 | overlap 4155762 4155768 4155767 GTCCGAGAGGTATAT CGGTCGTTTTCCAGCCCC TGG GGGGCTGGAAGGCGGCCG TCTTGGACCCTTTTC TERM 4615 4156637 - 4156662 + G 79 -8.9 -4.41616 | CCGGACGCGAGGGGC GGCCGCTGGTG GTGG TGCCGGTGGCC TTTGTTTCGGAGCAT Rru_A3617 4155853 - 4156941 + | ferrochelatase TERM 4616 4157156 - 4157169 + G 73 -5.9 -4.38141 | overlap 4157147 4157154 TGATCGCCGTCATCA CCTGG ATGG CCGGG TTGTTTTATCTGCCG Rru_A3618 4157083 - 4157529 + | hypothetical protein TERM 4617 4157531 - 4157547 + F 74 -3.5 -4.8622 | TAAAGCCGTTTTAAC CCCGGGG TTT CACAGGG TTTTTCGTTACCAAA TERM 4618 4157793 - 4157809 + F 70 -4.3 -4.48877 | overlap 4157795 ACCGCTCCGCCTCGG GCCGGAT CCA GTCCGCC TTTTCTGGCTATTTG rho 4157912 - 4159168 + | transcription termination factor Rho TERM 4619 4159154 - 4159184 + T 71 -6.8 -4.24002 | overlap 4159145 GACGATTTCTTCGAC GCGATGAATTCCTG ATT CAGGCGCTTATCGC TTTTAAAATTTGGGG TERM 4620 4159231 - 4159193 - T 89 -13 -4.08216 | opp_overlap 4159196, overlap 4159194 TTATCGCTTTTAAAA TTTGGGGCTCCCTGCAGA CTG TCTGCAGGGGGCCCCTTT TTTTGTTTCACGTGA TERM 4621 4159230 - 4159194 - T 83 -16.5 -3.04715 | opp_overlap 4159196, overlap 4159193 TATCGCTTTTAAAAT TTGGGGCTCCCTGCAGA CTG TCTGCAGGGGGCCCCTT TTTTTGTTTCACGTG TERM 4622 4159196 - 4159228 + T 100 -25.7 -5.95539 | opp_overlap 4159194 4159193 TCGCTTTTAAAATTT GGGGCTCCCTGCAGA CTG TCTGCAGGGGGCCCC TTTTTTTGTTTCACG Rru_A3620 4160245 - 4159271 - | zinc-containing alcohol dehydrogenase superfamily protein Rru_A3621 4160766 - 4160269 - | methylated-DNA-(protein)-cysteine S-methyltransferase Rru_A3622 4162839 - 4160797 - | hypothetical protein TERM 4623 4160982 - 4160966 - G 71 -9.3 -3.84246 | CGGGTAACCACCAAA GTGGCGC TCG GCGCCTC GGCAAGGACGCGGCC TERM 4624 4162326 - 4162273 - G 78 -15.4 -3.1994 | gap 3, opp_overlap 4162317, overlap 4162274 4162310 GATATGACTGAGCAA GGCGCGGGCGGCGTCA-TC-GAG-CTG GGG CAGGCTAAGAGCGACGCCGCCCGCGCG ATCGCCGGCGTTCAT TERM 4625 4162325 - 4162274 - G 87 -18.9 -2.51642 | gap 3, opp_overlap 4162317, overlap 4162273 4162310 ATATGACTGAGCAAG GCGCGGGCGGCGTCA-TC-GAG-CTG GGG CAGGCTAAGAGCGACGCCGCCCGCGC GATCGCCGGCGTTCA TERM 4626 4162970 - 4162939 - H 71 -8.6 -4.07568 | opp_overlap 4162968 4162969, overlap 4162942 GGGCGGCGGCGAAAA GAACCGGGCGCGAC GATT GCCTAACCCGGTTC CATGCCCTAACTTCG Rru_A3623 4163040 - 4163315 + | hypothetical protein TERM 4627 4163494 - 4163552 + G 100 -19.3 -3.71848 | gap 1, overlap 4163495 GACCCGCGCGGCGCT GCGCTCCCCCC-CCAGCGGCCCAGGGCC CACC GGCCCGGGGCCGGAGGAGGGGGGCGAGG TTCTTGATGACGCCC TERM 4628 4163495 - 4163551 + G 100 -22.8 -2.82895 | gap 1, overlap 4163494 ACCCGCGCGGCGCTG CGCTCCCCCC-CCAGCGGCCCAGGGCC CACC GGCCCGGGGCCGGAGGAGGGGGGCGAG GTTCTTGATGACGCC TERM 4629 4164329 - 4164307 - g 75 -9.1 -4.09685 | gap 1, opp_overlap 4164307 4164306 TGGCACGGTGGAAAA CGG-GGCCGA TGAT CCGGCCGCCG ATTTGACCGGAGAAG TERM 4630 4164477 - 4164489 + G 83 -4.7 -5.00616 | opp_overlap 4164477, overlap 4164464 AGGCGGCCCTGGAAA GCCGG GCC CGGGC TTTTTTCGAGGGCGA trmE 4163345 - 4164712 + | tRNA modification GTPase TrmE TERM 4631 4165425 - 4165446 + G 72 -5 -4.45544 | opp_overlap 4165418 4165422, overlap 4165424 CCTGGAAAGCCAGCC CGGCGATG AGCCGC CGCCGCCG TTTTCCTTCCTGACC Rru_A3625 4164772 - 4166661 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4632 4166658 - 4166685 + F 84 -3.4 -5.243 | gap 1, opp_overlap 4166649 4166666 GGAAGAGTGTTTCAC GTGAAACAGTTGG CCG CCGAC-GTTGCGC TTTTTTCCTGGTTTG Rru_A3626 4166725 - 4167330 + | glucose inhibited division protein Rru_A3627 4167323 - 4168153 + | chromosome segregation ATPase TERM 4633 4168597 - 4168569 - g 70 -6.5 -4.18018 | opp_overlap 4168569 CGCGCTGATCGAAAA CCTGCAGCGCCAG GAT CTTTCGCCGCTGG AAGAAGCCGAGGGCT TERM 4634 4168864 - 4168854 - g 72 -6.8 -4.2349 | GCGGCAGACCGAAAA GCTG GTG CAGC AGGCGGCGGCGGCGG Rru_A3628 4168150 - 4169130 + | chromosome segregation DNA-binding protein holA 4170473 - 4169445 - | DNA polymerase III subunit delta Rru_A3630 4171045 - 4170482 - | twin-arginine translocation pathway signal Rru_A3631 4173620 - 4171032 - | leucyl-tRNA synthetase Rru_A3632 4174320 - 4173715 - | hypothetical protein TERM 4635 4174208 - 4174185 - G 74 -14.6 -3.01712 | CCTGCTCGGGGAAGA CGGCCTGCGA GCCT TCGCAAGCCG TCAGCCCAAGGGTGA Rru_A3633 4175190 - 4174372 - | thiamine monophosphate synthase TERM 4636 4174397 - 4174412 + g 70 -2.4 -4.65895 | opp_overlap 4174383 4174384 4174398, overlap 4174398 AGCGGCGACAAACAT ACCGGT GGCC GCCGGC TTTTTCCATCCCCGG TERM 4637 4175361 - 4175318 - g 72 -8.7 -4.08216 | CGACGTGGTCGAAAA CCTGCGCGCCGTGCG-CGGCG CCAT CGCCGACGC-CTGCAAGCCGG TGGGCCGCGACGCCG TERM 4638 4175714 - 4175734 + G 79 -2.3 -5.09895 | opp_overlap 4175706, overlap 4175718 GCAGAAAGCCGGGAT CCTGCCGCG CGA CGCCGATGG TTTTTTGCGTGAATG Rru_A3634 4175262 - 4175990 + | hypothetical protein Rru_A3635 4176490 - 4175987 - | hypothetical protein TERM 4639 4176316 - 4176286 - G 72 -13.3 -3.18912 | gap 2, overlap 4176287 CCATCGAGGGATCAA GCGCGCGGACCGGCA GGC CGCCGG-CCG-GCGC TTCGCCCCGGTCGGG Rru_A3636 4177910 - 4176516 - | hypothetical protein TERM 4640 4176683 - 4176719 + g 83 -8.5 -4.58663 | overlap 4176684 CGGGGGAGGTCGTCA AGCCGTTTGGCGGCGTC GCC GAAGCCGTCGGTCGGCC TTTTTCGGGAATGCT Rru_A3637 4179329 - 4178175 - | GTP cyclohydrolase II Rru_A3638 4179419 - 4180231 + | two component transcriptional regulator Rru_A3639 4181457 - 4180213 - | coproporphyrinogen III oxidase TERM 4641 4180805 - 4180795 - G 81 -8.2 -4.56597 | GTGTTCGGCGAAAAA CCGG GTG CCGG CCTCGATGGTTAATT Rru_A3640 4182047 - 4181442 - | putative deoxyribonucleotide triphosphate pyrophosphatase Rru_A3641 4182800 - 4182078 - | RNAse PH hrcA 4183002 - 4184060 + | heat-inducible transcription repressor Rru_A3643 4184109 - 4184774 + | GrpE protein TERM 4642 4184814 - 4184781 - T 83 -2.3 -5.24531 | gap 1, opp_overlap 4184781 ACCGTCTAGAAAAAA TCTCCG-AGCGCTCTG GAC CAGAGTGCGACGACGA TTTTCTTCACCATCC TERM 4643 4184864 - 4184891 + T 100 -17.7 -5.03314 | opp_overlap 4184879 TCGGCTTGATCGACA GCGGCGGGCGC AAACCA GCGTCCGCCGC TTTTTTCGCCCTCAG Rru_A3644 4185502 - 4184903 - | uracil-DNA glycosylase superfamily protein TERM 4644 4185128 - 4185084 - G 77 -5.7 -4.65895 | gap 2, overlap 4185085 CGCCCCAGGTAAAAA CCCTGGGCATAGCCGCCGACC AGCAG GGTCAG-GGCGAT-CCCTGGA AGGACGGCGCGGAAG Rru_A3645 4186230 - 4185499 - | NAD-dependent deacetylase TERM 4645 4186077 - 4186063 - G 72 -5.6 -4.36914 | overlap 4186065 GCGGTCGTTATAAAA GGCCTG GAC CAGGGC GGGGTCGCGGGCGAA Rru_A3646 4186316 - 4186807 + | protein tyrosine phosphatase Rru_A3647 4187435 - 4186821 - | hypothetical protein TERM 4646 4187842 - 4187881 + G 71 -3.4 -4.70879 | gap 1, overlap 4187878 GGCCCAAGAAGATCT CGCCCGGGTGCTGGCCG CCCTCCA TGCCCAGC-CCCAGCCG TTTTTCGGCTTTGAA TERM 4647 4188329 - 4188378 + G 70 -6.4 -4.16943 | gap 3 CTGCTTGTCCATGTC CGGCTG-TTTGGCGG-CGGCTATGG TTC CCA-GGTCGACCGCCTGCTCAGCCG TTTTGGCCTGTGAGC Rru_A3648 4187537 - 4188391 + | aminoglycoside phosphotransferase TERM 4648 4188477 - 4188505 + T 100 -19.1 -3.83205 | opp_overlap 4188474 4188473 4188461 TCTAGATCAAAGTTT CTGCGTTAAAGGA GAC TCCTTTAACGCAG TTTGATCTAGGGCCT Rru_A3649 4189067 - 4188468 - | 2',5' RNA ligase Rru_A3650 4189700 - 4189095 - | lipolytic protein Rru_A3651 4189816 - 4190529 + | ABC transporter component Rru_A3652 4190526 - 4191257 + | hypothetical protein TERM 4649 4191299 - 4191323 + G 80 -14.2 -3.63968 | overlap 4191317 GTGGCCCTGCGCTTC GCCCTGCGCG AATTG CGCGCCGGGC TTTCCGGCTTTCGCG TERM 4650 4191891 - 4191873 - g 78 -10.2 -4.08216 | CGACGGTGGCGAAAA CCGGGCTG ATC CAGCCGGG CAGCCTGGTGGAATA Rru_A3653 4191254 - 4193797 + | hypothetical protein TERM 4651 4193822 - 4193798 - T 100 -20 -3.81146 | opp_overlap 4193790 4193789 4193818 CTGCGCAACGAATAA CCCCCCCGGG GGAGA CCCGGGGGGG CGAAGCGCATTCTCT Rru_A3654 4194274 - 4193939 - | hypothetical protein purH 4196000 - 4194420 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Rru_A3656 4198018 - 4196060 - | polysaccharide biosynthesis protein CapD TERM 4652 4197647 - 4197635 - G 79 -4.7 -4.83615 | overlap 4197636 4197637 CAGCCGGTACAAAAA GCGCG GGC CGCCC AGCAGGGCCATCAGC TERM 4653 4197999 - 4197976 - G 70 -13.2 -3.01712 | gap 1, overlap 4197946 4197941 CGTCGTGGGCGAAGA CGATGCGCGCC CGG GGCG-GCATCG GGGTAAACAGCGACC Rru_A3657 4199034 - 4198021 - | glycosyl transferase family protein TERM 4654 4198413 - 4198367 - G 74 -12.1 -3.53012 | CCCTCGGCCGCCAAA GCCGCCAGCAGGGCGCCGAGC AGATA GCCCAGCGGCACGCTGCCGAC ATCGCCGAGGAAGAT TERM 4655 4198476 - 4198459 - G 85 -6.2 -4.91109 | opp_overlap 4198473 GTTCCACCACAAAAA GCCGAG CGCCGC CCCGGC CAGGATCGGCCCGGC TERM 4656 4198711 - 4198653 - G 80 -17.4 -2.70932 | overlap 4198635 4198638 GCGGCCCGCCAAGGA CCTCGGGC-AGCAGCCCACCCAGGCCAA GCGCG CCGGCC-GGGAGGGCGGCTAGCCCCAGG CCGACGCACAGCGCC TERM 4657 4198917 - 4198859 - G 86 -18.2 -3.09878 | gap 2, overlap 4198857 4198887 GCCAGCCAGCCAACA GCGCAGAGCGCCAGCGCGACGGCGAG AACCGCCAG CCCGCCGCCGCGC-GGCG-TCGGCAC GGAATGGCTGGAGCG Rru_A3658 4200256 - 4199096 - | glycosyl transferase, group 1 TERM 4658 4199650 - 4199636 - G 79 -2.7 -5.03994 | CCCGACATAGAAAAA GCTGG GGCGG CCGGC GGGTTCGGGGGCGGG Rru_A3659 4201857 - 4200253 - | hypothetical protein TERM 4659 4201874 - 4201831 - G 74 -12.2 -3.53224 | gap 1 CAGCGCGCCGGTAAA CCCGGGCCCGCGACGGCGGCG GCT CACCGCGG-CGCGTCCCCGCG AACCAGCCGGGCGAT Rru_A3660 4203170 - 4201854 - | tRNA and rRNA cytosine-C5-methylase Rru_A3661 4204526 - 4203246 - | major facilitator transporter TERM 4660 4203313 - 4203302 - G 72 -5.8 -4.30576 | overlap 4203303 CGGCGACCAGGAAAA CCAC CACG GTGG CCATGCCGAGGCGCT TERM 4661 4203575 - 4203559 - G 77 -5.1 -4.66163 | overlap 4203563 ACGGCGACGCAAAAA CCGATCA GGC CGATCAG GCCGACAACGATGGT TERM 4662 4204533 - 4204483 - G 100 -23.3 -4.77438 | gap 2, opp_overlap 4204517, overlap 4204469 4204484 AGGCACCACGAAAAA GCCGCGCCGCGACCGGGCGGCGCAG CGG CGGCGCC-CCCGGTCACGG-GCCGC GGTCGGGCTGTCGTC TERM 4663 4204535 - 4204484 - G 100 -23.1 -3.4574 | gap 3, opp_overlap 4204517, overlap 4204469 4204483 GGCACCACGAAAAAG CCGCG-CC-GCGACCGGGCGGCGCAG CGG CGGCGCC-CCCGGTCACGGGCCGCGG TCGGGCTGTCGTCAA Rru_A3662 4204906 - 4204547 - | hypothetical protein Rru_A3663 4209788 - 4204911 - | glutamate dehydrogenase (NAD) TERM 4664 4207382 - 4207364 - G 72 -5.8 -4.40237 | overlap 4207358 GACTATAGACGAAAA CCTCGACC CAG GGGCGCGG CGCCGGCAGCTCATC TERM 4665 4208874 - 4208899 + g 72 -5.3 -4.32034 | opp_overlap 4208842, overlap 4208851 4208875 GTCCATCGCCACCGG CCGGTGGACGC GGGC GCGTTCGCTGC TTTTGGTGATGATCA Rru_A3664 4209914 - 4210606 + | ABC transporter component TERM 4666 4210802 - 4210816 + G 89 -2.7 -5.28683 | overlap 4210803 CCTGTCGATCTCGAT CCGCC TGCGC GGCGC TTTTTTGGTGTTGAT Rru_A3665 4210752 - 4212455 + | chemotaxis sensory transducer Rru_A3666 4213675 - 4212446 - | hypothetical protein Rru_A3667 4213824 - 4214678 + | Short-chain dehydrogenase/reductase SDR TERM 4667 4215011 - 4214986 - g 100 -10.3 -4.77036 | opp_overlap 4214966 4214988, overlap 4214987 GGTCAGCATGAAAAA GCTGGCCGCCG TGTT CGGCGGCAAGG CGGCCCATATGATGA TERM 4668 4215010 - 4214987 - g 77 -13.8 -3.4574 | opp_overlap 4214966 4214988, overlap 4214986 GTCAGCATGAAAAAG CTGGCCGCCG TGTT CGGCGGCAAG GCGGCCCATATGATG Rru_A3668 4214765 - 4215238 + | hypothetical protein Rru_A3669 4215798 - 4215298 - | hypothetical protein Rru_A3670 4216008 - 4217738 + | potassium efflux system protein TERM 4669 4217752 - 4217787 + T 100 -23.4 -3.01712 | opp_overlap 4217752 4217757, overlap 4217757 AAGGGTCCCCCACAA GAAAACGGCCGGCGGG ATGC CCCACCGGCCGTTTTC TGTTCAAGGAAGGCG TERM 4670 4217787 - 4217752 - T 100 -25.6 -3.29043 | opp_overlap 4217752 4217757, overlap 4217757 AAGGGTCCCCCACAA GAAAACGGCCGGCGGG ATGC CCCACCGGCCGTTTTC TGTTCAAGGAAGGCG TERM 4671 4217782 - 4217757 - T 100 -19.7 -4.77165 | opp_overlap 4217752 4217757, overlap 4217752 TCCCCCACAAGAAAA CGGCCGGCGGG ATGC CCCACCGGCCG TTTTCTGTTCAAGGA TERM 4672 4217757 - 4217782 + T 100 -17.5 -4.66537 | opp_overlap 4217757 4217752, overlap 4217752 TCCCCCACAAGAAAA CGGCCGGCGGG ATGC CCCACCGGCCG TTTTCTGTTCAAGGA Rru_A3671 4220368 - 4217807 - | bifunctional preprotein translocase subunit SecD/SecF TERM 4673 4219023 - 4219040 + g 73 -4 -4.66953 | overlap 4219020 4219019 CCGGTTTCCATCGAC GCGGCG ACGCCC CGCCCC TTTTTGGCCTCTTCG Rru_A3672 4220837 - 4220478 - | hypothetical protein TERM 4674 4220921 - 4220882 - R 76 -9.3 -4.07568 | gap 1, opp_overlap 4220881 4220914, overlap 4220883 4220907 GCGGCGGCCGGAAAA GCCGATCGG-CGGACTAT AAGGG AAAGCCCGGCCGATCGGG ATCGCTTATTTGACC TERM 4675 4220920 - 4220883 - R 72 -12.8 -3.04398 | gap 1, opp_overlap 4220881 4220914, overlap 4220882 4220907 CGGCGGCCGGAAAAG CCGATCGG-CGGACTAT AAGGG AAAGCCCGGCCGATCGG GATCGCTTATTTGAC Rru_A3673 4222057 - 4220927 - | glutaconyl-CoA decarboxylase TERM 4676 4221922 - 4221900 - G 75 -3.3 -4.75372 | opp_overlap 4221907, overlap 4221919 ATGATGCACGAAAAA CCGATGCCG ACCAG CAACAGCGG CTCGTATTTCTTCGA Rru_A3674 4222409 - 4222248 - | hypothetical protein TERM 4677 4222580 - 4222549 - R 86 -15.2 -3.28712 | gap 1, opp_overlap 4222535 4222573 4222574 4222575, overlap 4222523 GGGCCCGGCGCATAA GGCCCGATC-TCCGA CCC TCGGTTGATCGGGCC CGGCGACGCGGCCTG Rru_A3675 4223261 - 4222599 - | glutathione S-transferase-like protein TERM 4678 4223359 - 4223332 - R 100 -17 -5.00616 | GGCGGGCGGAAAAAA GGGGACACCGGC CTTC GCCCGTGTCCCC CTGATGGTGGCGGTT Rru_A3676 4224673 - 4223390 - | TRAP dicarboxylate transporter, DctM subunit Rru_A3677 4225395 - 4224670 - | tripartite ATP-independent periplasmic transporter DctQ TERM 4679 4225307 - 4225289 - G 83 -12.4 -4.06502 | TAGGGGTAAAGGAAA GCCACGCC GGA GGCGTAGC GATGGACCACGGCGA TERM 4680 4225445 - 4225417 - R 76 -15.3 -2.50816 | gap 1, overlap 4225416 4225435 GCTCCACCGACGAAC GGGCCGGTCGCG AAACCA CGCG-CCGGCCC TGCGGGCAAGGCCCC Rru_A3678 4226520 - 4225525 - | TRAP dicarboxylate transporter- DctP subunit Rru_A3679 4227839 - 4226709 - | rod shape-determining protein RodA TERM 4681 4227552 - 4227542 - G 70 -2.4 -4.61231 | CGACATGGCCAAAAA CCGC CAC GCCG ACCAGGGCCAGCAGG TERM 4682 4227807 - 4227827 + g 85 -5.3 -5.00616 | opp_overlap 4227809, overlap 4227809 ATGCCAGGGCGTAAC CAGCGGCTC GTC GAGCAGCTC TTTTTTCGCCACGCG Rru_A3680 4228893 - 4227901 - | integral membrane protein TerC TERM 4683 4228260 - 4228277 + g 73 -12.7 -3.43919 | opp_overlap 4228257 4228255, overlap 4228259 GGGCCAGGAACAGCG GCGTCGC CCAG GCGACGC TCTTTCCGGTTTCGG TERM 4684 4228754 - 4228734 - G 77 -5.3 -4.60797 | CGGCGATATAGAAAA CCGACAGCC GCA GGCTTTGGG CGATCGAAATGTCGT TERM 4685 4229036 - 4229052 + H 83 -4.3 -5.08011 | opp_overlap 4229039 GGTCTTTTCGGCAAG GGAGGCG GCG CGGCTTC TTTTTTGGGCGTTTT Rru_A3681 4229220 - 4229825 + | YceI TERM 4686 4230128 - 4230144 + G 71 -9.3 -3.86346 | ACGGGTGATGGCCAA GGCCGCC CAT GTCGGCC TTTATGCCGGCCTGC Rru_A3682 4229853 - 4230419 + | cytochrome B561 Rru_A3683 4230432 - 4231010 + | YceI Rru_A3684 4232646 - 4231018 - | sulfotransferase TERM 4687 4232739 - 4232711 - R 88 -13.7 -3.60098 | ATCCCCCAGGGGAAA GCCGGCGCGCCGC GAG ACGGTGCGCAGGC TGAAGGCCGAGCGGA Rru_A3685 4233217 - 4232693 - | AsnC family transcriptional regulator Rru_A3686 4233317 - 4234435 + | L-alanine dehydrogenase Rru_A3687 4235117 - 4234485 - | cobalt transport protein TERM 4688 4234945 - 4234909 - G 70 -6.5 -4.27441 | gap 1 AGCACCAGGAAGAAA GCCAG-GGCGCGCAGT TGACCG ACCGCCCGCCGCCAGC CCAGGCCGCAGGCCG TERM 4689 4235126 - 4235105 - G 80 -9.3 -4.1891 | GCCCGGGAACATAAA GGGCGGCGA TCAT CCGCCGTCC CGCGCGCTGATCAGG Rru_A3688 4235815 - 4235114 - | ABC transporter component Rru_A3689 4236264 - 4235812 - | MaoC-like dehydratase Rru_A3690 4237217 - 4236261 - | glutathione synthetase Rru_A3691 4238036 - 4237401 - | transport-associated protein TERM 4690 4237995 - 4237970 - G 81 -11.7 -3.91357 | CCAGAAGGAGAAGAA CCGCCCACGGC CAGG GCCGGCGGCGG GCTGGGCAAACCCTT Rru_A3692 4238443 - 4238066 - | hypothetical protein Rru_A3693 4239363 - 4238440 - | hypothetical protein TERM 4691 4238515 - 4238531 + g 70 -10.8 -3.53012 | opp_overlap 4238511 GCGTCGATAGAGCGC GCGGCG GGCGA CGCCGC TTTCCGCCGCCAGAC TERM 4692 4239745 - 4239727 - g 80 -17.4 -2.79183 | TCCAGCCCTATGACA CCGCCGGC AGC GCCGGCGG CGCCGCCCAGGCGGC TERM 4693 4240336 - 4240324 - g 70 -10.5 -3.72576 | CCGCCCCCGATGAAA GCGGC GCC GCCGC CTTCAAGGCCCAGTA TERM 4694 4240472 - 4240500 + G 70 -5.9 -4.19238 | CGATGGCGTGCGCAA TCCCAACGGCTTC GCC GGAGTCGATGGCA TTTTCCGCTTCCGCC Rru_A3694 4239393 - 4240619 + | hypothetical protein TERM 4695 4240646 - 4240624 - f 93 -7 -5.21709 | gap 1, opp_overlap 4240622 4240625, overlap 4240625 4240626 TCGGATACTAAAAAA GCCCTGGGG ATAAAA CCCCAGG-C TGTATTGCATTCACG TERM 4696 4240726 - 4240676 - f 93 -15.4 -3.48593 | gap 1, overlap 4240677 GACGGGGCGATACAA TCTCCCTGACGGGGATGGCGCGG GTCGGG CCGCCCC-CCACCGTCAGGGAGG AGCGAACGTGACAGA TERM 4697 4240725 - 4240677 - f 88 -18.9 -2.68942 | gap 1, overlap 4240676 ACGGGGCGATACAAT CTCCCTGACGGGGATGGCGCGG GTCGGG CCGCCCC-CCACCGTCAGGGAG GAGCGAACGTGACAG TERM 4698 4240929 - 4240948 + G 71 -2.8 -4.58663 | overlap 4240931 GATGCCCCGGCCGCC TTCTGGAC CGAG GTCTGGGA TTTTTGCGGGGTCAT Rru_A3695 4240734 - 4242740 + | acetoacetyl-CoA synthetase TERM 4699 4242740 - 4242750 + T 75 -8.2 -4.16016 | CGAACTGGCGGGATA GGGC TTA GCCC TTTGTTGGCGGGTCG Rru_A3696 4243493 - 4242744 - | exodeoxyribonuclease III xth Rru_A3697 4244269 - 4243568 - | fumarylacetoacetate (FAA) hydrolase TERM 4700 4244441 - 4244406 - R 100 -16.1 -5.00616 | opp_overlap 4244409, overlap 4244408 CGGCCCCTTAAAAAA CGTGACGCCCGGCAG GGGGGG CTGCCGGGCGTCTTG TCTTCACCGATCGGT TERM 4701 4244439 - 4244408 - R 84 -17.3 -2.75708 | opp_overlap 4244409, overlap 4244406 GCCCCTTAAAAAACG TGACGCCCGGCAG GGGGGG CTGCCGGGCGTCT TGTCTTCACCGATCG TERM 4702 4244409 - 4244438 + r 100 -20.8 -3.66288 | opp_overlap 4244408 4244406 CCCCTTAAAAAACGT GACGCCCGGCAG GGGGGG CTGCCGGGCGTC TTGTCTTCACCGATC TERM 4703 4244600 - 4244616 + r 78 -6.6 -4.62783 | opp_overlap 4244600 TTCCAATGCAATCGA CGCATA GCAGA TATGCG TTTTTAAGATGCCTA Rru_A3698 4245323 - 4244658 - | Outer membrane lipoprotein carrier protein LolA TERM 4704 4244847 - 4244822 - G 78 -10.3 -4.07885 | opp_overlap 4244822 4244834 GATCGGTGGTGAAAA CCAGGGTCAGG GTGC CCTGCCCCGGG TCATTGGTCTGAACC Rru_A3699 4248633 - 4245544 - | acriflavin resistance protein TERM 4705 4245725 - 4245709 - G 70 -6.5 -4.18494 | CACGGCGATGGAAAA CCGGC TGTTGGC GCCGG CGCCGCTGGCGAACA Rru_A3700 4249775 - 4248630 - | secretion protein HlyD TERM 4706 4249181 - 4249165 - G 70 -8.7 -4.02132 | overlap 4249157 TGGGAAACCGAGAAA TCGGCGA GGA TCACCGA CAGGTCCTGAAGGTC Rru_A3701 4250346 - 4249810 - | TetR family transcriptional regulator TERM 4707 4251185 - 4251198 + G 77 -8.1 -4.4078 | overlap 4251167 CCGCCTGCTGCTCCA GGACG CCCG CGTCC TTTTGCTTGACGAAC Rru_A3702 4250676 - 4251452 + | ABC transporter component TERM 4708 4251793 - 4251824 + G 70 -6.6 -4.26622 | gap 1 GTCGTTGGGCGTGCT GATCG-TCTCGCTGC GCG GCAGCAACATCGATC TTTTGCATGTGCTTT Rru_A3703 4251449 - 4252321 + | ABC-3 transporter component Rru_A3704 4252386 - 4253336 + | periplasmic solute binding protein TERM 4709 4253360 - 4253390 + T 100 -15.4 -5.07486 | GGACGGTGCGTTTTC CCCCGCGTCTGG CAAGCCT CCGGGCGCGGGG TTTTTCTTACAGATC Rru_A3705 4255946 - 4253397 - | DNA translocase FtsK TERM 4710 4255434 - 4255419 - G 89 -8.2 -4.98255 | overlap 4255428 4255429 CTGGAAGCACAAAAA GGCCAG CAAG CCGGCC AGCCCGCCGATCAGC Rru_A3706 4257352 - 4255970 - | aminotransferase TERM 4711 4256214 - 4256195 - G 71 -9.2 -3.78034 | overlap 4256196 CAGCCACAGGAAGAA CCCGCCGG GCGG CCGGCGAA ACCCCAGCATGCCCT TERM 4712 4258277 - 4258297 + G 73 -6 -4.35116 | GATCATCTGGGCTGG GTGCGTCC GGTCG GGCCGCGC TTTTCCTATCGGCTG Rru_A3707 4257437 - 4258726 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase Rru_A3708 4259945 - 4258788 - | hypothetical protein TERM 4713 4259617 - 4259598 - G 100 -7.8 -5.53436 | overlap 4259601 4259609 ATACAACACAAAAAA GAACGCCA GAAG CGGCGCTC CGAGCCGCAACAGAC TERM 4714 4259633 - 4259601 - G 84 -6.7 -4.80737 | overlap 4259598 4259609 CAACACAAAAAAGAA CGCCAGAAGCGGCGC TCC GAGCCGCAACAGACG ATCAGCCAGATAGCG TERM 4715 4259726 - 4259706 - G 79 -7.6 -4.47707 | opp_overlap 4259705 4259706 CGCGAGCAAAAAGAA CAAGCCCA TGAAG TAGGCTTG GTTGATGGTGTTGAA Rru_A3709 4260329 - 4260135 - | hypothetical protein Rru_A3710 4261041 - 4260385 - | peptidase S16, lon-like TERM 4716 4261056 - 4261092 + r 93 -14.4 -3.96148 | gap 2, overlap 4261057 TCGCATACCCCTCCA ACCGGGGT--CCGGCGGC CCA GCCGCCGGTCGCCCCGGA TTTCTGATCAGGAAA TERM 4717 4261057 - 4261091 + r 86 -17.9 -2.97475 | gap 2, overlap 4261056 CGCATACCCCTCCAA CCGGGGT--CCGGCGGC CCA GCCGCCGGTCGCCCCGG ATTTCTGATCAGGAA Rru_A3711 4262038 - 4261100 - | thioredoxin-related TERM 4718 4262408 - 4262437 + H 100 -16.5 -4.2361 | opp_overlap 4262408 4262409 4262414, overlap 4262409 4262414 CGATACCAAAGAATA CCAAAAGGCGCCC TCCG GGGCGCCTTTTGC TTTTGGGCTTATCTT TERM 4719 4262437 - 4262408 - H 93 -16.5 -3.61438 | opp_overlap 4262408 4262409 4262414, overlap 4262409 4262414 CGATACCAAAGAATA CCAAAAGGCGCCC TCCG GGGCGCCTTTTGC TTTTGGGCTTATCTT TERM 4720 4262436 - 4262409 - H 95 -20 -2.7614 | opp_overlap 4262408 4262409 4262414, overlap 4262408 4262414 GATACCAAAGAATAC CAAAAGGCGCCC TCCG GGGCGCCTTTTG CTTTTGGGCTTATCT TERM 4721 4262409 - 4262436 + H 95 -20 -3.13081 | opp_overlap 4262409 4262408 4262414, overlap 4262408 4262414 GATACCAAAGAATAC CAAAAGGCGCCC TCCG GGGCGCCTTTTG CTTTTGGGCTTATCT TERM 4722 4262431 - 4262414 - H 100 -14.1 -4.52347 | opp_overlap 4262409 4262408 4262414, overlap 4262409 4262408 CAAAGAATACCAAAA GGCGCCC TCCG GGGCGCC TTTTGCTTTTGGGCT TERM 4723 4262414 - 4262431 + H 100 -14.1 -4.67641 | opp_overlap 4262414 4262409 4262408, overlap 4262409 4262408 CAAAGAATACCAAAA GGCGCCC TCCG GGGCGCC TTTTGCTTTTGGGCT TERM 4724 4262813 - 4262845 + G 78 -14.7 -3.22223 | overlap 4262805 GCCATTCCGGCGGCG GGAGCCGCCGTGGTC TCC GCCCCCGGCCGCTCC TTCGTCCTGGCCTTC TERM 4725 4262904 - 4262886 - g 70 -5.9 -4.20696 | opp_overlap 4262887 4262900, overlap 4262887 TCAGCAATCCGAAAA CCGCCGT CGTCT ACGCCGG CATCTTCGCCGCCCT Rru_A3712 4262501 - 4263136 + | lysine exporter protein LysE/YggA TERM 4726 4263152 - 4263173 + F 78 -4.4 -4.76312 | gap 1, overlap 4263141 ATGCGCCGAAGGCGC GCGGTCACG CGCCC CG-GATCGC TTTTTCCGTGTTATC TERM 4727 4263587 - 4263602 + G 72 -5.4 -4.4078 | gap 1, opp_overlap 4263584, overlap 4263584 4263589 CTATCTTATCAAGCC GAGCGCC GGC GGC-CTC TTTTCCTTCGCCGGG Rru_A3713 4263225 - 4263899 + | hypothetical protein TERM 4728 4264190 - 4264176 - g 70 -6.4 -4.21275 | overlap 4264179 CCAACTCATGCAAAA GGATCA GGG CGATCC CCGCTATGTCGTGCG Rru_A3714 4264066 - 4264443 + | hypothetical protein TERM 4729 4264611 - 4264621 + G 100 -5.4 -5.54885 | opp_overlap 4264609 4264611, overlap 4264617 TCCATAAGAAAATCA TCCT CAT AGGA TTTTTTATTCCTATT TERM 4730 4265826 - 4265870 + G 72 -13.6 -3.14229 | overlap 4265824 4265858 4265860 4265864 CCTCGGCCTATGCCT CGCCGACCGGCCA-TAGCATGG TTC CCAGCCTGCTGGCCGG-CGGCG TGTTCCTCGGCCTGT Rru_A3715 4264520 - 4266658 + | lipopolysaccharide biosynthesis TERM 4731 4267220 - 4267252 + G 78 -9.8 -4.03234 | gap 1, overlap 4267242 AGGGCTTCCTCGAGG GCGGCACCAGCGCCG AGAC CGCCGATG-TGCCGC TTTATGTCGGCGACA TERM 4732 4267242 - 4267270 + G 72 -6.8 -4.25104 | gap 1, overlap 4267220 CAGCGCCGAGACCGC CGATGT-GCCG CTTTATGT CGGCGACATCG TTTTCGTGCCGCGCA Rru_A3716 4266649 - 4267374 + | polysaccharide export protein TERM 4733 4267457 - 4267502 + G 100 -23.2 -2.94099 | GCTGACCCTGGAGCA GGCGGCGGCGGCGCTGGCCG CCCGCC CGGCCGGGGCCGCCTTCGCC TATGTGGTGACGCCC Rru_A3717 4267371 - 4268156 + | glycosyl transferase WecB/TagA/CpsF TERM 4734 4268406 - 4268440 + G 70 -10.7 -3.60818 | gap 1 ACCTGTCCAAAATCT GGCCTTT-GGCCCTGC TGCC GCTGGGCCTGAAGGTC TTTCGCGAGTTTTCC TERM 4735 4269354 - 4269381 + G 85 -13.4 -4.08064 | gap 1 CCCTGCGCTCGGGCA TCGCCCCGCCGGG CAG CCCAGCGGG-CGA TTTTCGCGGGGCCTT Rru_A3718 4268153 - 4269541 + | hypothetical protein TERM 4736 4269643 - 4269671 + G 78 -10.1 -4.11216 | overlap 4269647 4269648 CTGCGCGGCGCTTCT CGGCCGGGTGGCC CTT GGCCGCCCCTTCG TTTTCAGCCTGACGC TERM 4737 4269647 - 4269667 + G 70 -10.3 -3.67622 | overlap 4269643 4269648 GCGGCGCTTCTCGGC CGGGTGGCC CTT GGCCGCCCC TTCGTTTTCAGCCTG Rru_A3719 4269548 - 4270414 + | methyltransferase FkbM TERM 4738 4270582 - 4270600 + G 77 -3.8 -4.75472 | gap 1, overlap 4270582 GTCGCCCGCTTCCTT GGC-GCC AGCGAG GGCGGCC TTTTCTTCCTGTGCC TERM 4739 4271606 - 4271579 - g 70 -6.2 -4.16943 | opp_overlap 4271597, overlap 4271580 CGGGACATGGGAAAA TGCTGCGCCAGA TCAA TCTGGTGCAACT CGGCGTCTGCGTGGT TERM 4740 4271658 - 4271703 + G 78 -14.6 -3.31144 | GCCCTTTGGCATGAT GGGCGCGGCGATCGCCAGCG CCCTGC CCCTGGCGATCGGCGCCACC TTGTCGGCCTCGGCC Rru_A3720 4270426 - 4271838 + | polysaccharide biosynthesis protein TERM 4741 4272107 - 4272142 + G 71 -9.1 -3.80174 | gap 2, overlap 4272107 AGGGCCTGAGCGGCC T-GCG-CGACCTTGCCG AGGC CGGCAAGATCGACGCCA TTCTTCTGACGCTCT Rru_A3721 4271848 - 4272936 + | sugar transferase TERM 4742 4273818 - 4273772 - g 73 -10.6 -3.64703 | opp_overlap 4273770 CGCCGCGGATCGAAA GGCCGGGATGATGCTCTATGCC TTT GGCATCCCGCCGCAGCCCGGCC AGCTTTCAGCCAATG Rru_A3722 4272966 - 4273880 + | hypothetical protein TERM 4743 4274198 - 4274217 + G 81 -4.2 -5.03994 | GCCATAAATGGCAAT GCGTCG AACTGGCG CGGCGC TTTTTGTATCTGACC Rru_A3723 4274023 - 4275951 + | bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase Rru_A3724 4276384 - 4277166 + | ABC transporter component Rru_A3725 4277159 - 4277899 + | ABC transporter component Rru_A3726 4277896 - 4278798 + | inner-membrane translocator Rru_A3727 4278795 - 4279799 + | inner-membrane translocator Rru_A3728 4279834 - 4281012 + | extracellular ligand-binding receptor TERM 4744 4281033 - 4281071 + F 95 -15.9 -3.71527 | gap 1, overlap 4281036 CGGGCTTCGCCCGTC GTCGCGCCCCGGGCCGGG ATGG TCCGACCCGGGGCG-GCC TTTCCGTCGTTGCGC TERM 4745 4281036 - 4281070 + F 84 -17.1 -2.82595 | gap 1, overlap 4281033 GCTTCGCCCGTCGTC GC-GCCCCGGGCCGGG ATGG TCCGACCCGGGGCGGC CTTTCCGTCGTTGCG Rru_A3729 4281139 - 4281891 + | creatininase Rru_A3730 4281965 - 4282483 + | asparaginase Rru_A3731 4282564 - 4283253 + | GntR family transcriptional regulator Rru_A3732 4283630 - 4283265 - | hypothetical protein Rru_A3733 4284328 - 4283765 - | HNH endonuclease TERM 4746 4283835 - 4283802 - G 100 -10.4 -5.09762 | gap 1, opp_overlap 4283832 TCCCAATAAAGAAAA TCCCGCCAGCTT-TC ATGAA GATAACCTGGCGGGA AAGAGCGTCCCTCGT TERM 4747 4284771 - 4284804 + G 70 -11 -3.60431 | overlap 4284768 TGGGCCGATTACCGC GCCGCCCTGGCC-CGT TTGG ACGAGGCC-GGGCTGC TTTACCGCTGCTTTT Rru_A3734 4284486 - 4285367 + | glutamyl-tRNA synthetase, class Ic TERM 4748 4285383 - 4285399 + F 76 -13.7 -3.05498 | GGGGGGGGCTTGCCG GGCGGCA AGA TGCCGCC TATCTATATGGCATG TERM 4749 4285767 - 4285744 - g 70 -5.9 -4.25104 | gap 1, opp_overlap 4285744 TGGCGGTGAGGAAAA GGCCGGTCGC TGGCT GCGTC-GGCC TTTGACGGAACTGGG Rru_A3735 4285412 - 4285876 + | hypothetical protein Rru_A3736 4285876 - 4286337 + | hypothetical protein TERM 4750 4287017 - 4286986 - g 83 -2.2 -5.18357 | overlap 4286990 GAAGTTATTAAAAAA TTTAGGGAATGCCT TGAA AAGCTTTCCCGAGA ATTGGCTAATTCAGG Rru_A3737 4286428 - 4287762 + | KAP P-loop Rru_A3738 4288758 - 4287772 - | tyrosine recombinase XerD subunit TERM 4751 4288110 - 4288078 - G 77 -10.3 -3.96068 | overlap 4288075 GGAGGGGAACAAGAA GCGGTCGGCCCGGCG CCG CGCCGCGCCGCTTGC GGGCAGGGTCGTCGG Rru_A3739 4290449 - 4288755 - | hypothetical protein TERM 4752 4290312 - 4290264 - G 70 -12.9 -3.05384 | GCGGGCCGCACCGAA GGGCCCGGCGAGCGGCGGCGC CCCGGCC GAGCGGCTTCCCGCCGAGCCC GGCGTCAACGGATAG Rru_A3740 4290807 - 4291373 + | shikimate kinase TERM 4753 4291702 - 4291746 + G 73 -15 -2.80994 | gap 2, overlap 4291721 4291726 GGCGGCGCGGTTCGA GCGCTCGACCACCCTGCTCGCC CTC GGCG-GCGGGGTGATCG-GCGA TCTGGTCGGCTTCGC Rru_A3741 4291370 - 4292527 + | 3-dehydroquinate synthase Rru_A3742 4292553 - 4293284 + | CBS Rru_A3743 4293281 - 4293442 + | hypothetical protein Rru_A3744 4293572 - 4294018 + | signal transduction protein TERM 4754 4294043 - 4294078 + F 95 -11.2 -4.56597 | gap 1, overlap 4294047 TTGTTTCTTTTTTGG CACGGGCAAGTCGGGGC GGC GCTTCGGCTTGCCT-TG TTTTTGGAGCACCCC TERM 4755 4294047 - 4294075 + F 100 -15.3 -4.40561 | overlap 4294043 TTCTTTTTTGGCACG GGCAAGTCGGGGC GGC GCTTCGGCTTGCC TTGTTTTTGGAGCAC Rru_A3745 4294099 - 4294671 + | hypothetical protein TERM 4756 4295174 - 4295164 - g 70 -8.2 -3.95852 | ACTTCATCAATGAAA CGGC CTC GCCG GGTCTGAAGCGCGGC Rru_A3746 4294818 - 4295450 + | 50S ribosomal protein L25P Rru_A3747 4295478 - 4296209 + | peptidyl-tRNA hydrolase TERM 4757 4297028 - 4297067 + G 82 -11.4 -4.0825 | opp_overlap 4297015 AACCGGCCTGACCCG GGTGATCCGCGCCGGC TATGACCT GCTGGAGCTGATCACC TTCTTTACTTGCGGC TERM 4758 4297142 - 4297092 - g 78 -14.8 -3.33696 | gap 4 TGCGGCCCCAAGGAA GCCCGC-GCCTGGACGGTGCGGCGCG GGT CGCGC-GC-CC-CCCAGGCCGCCGGC GTCATCCATAGCGAT Rru_A3748 4296213 - 4297316 + | translation-associated GTPase TERM 4759 4297676 - 4297661 - g 82 -6 -4.72272 | GTCTTCGACGAAAAA GGCCCC TTGA GCGGCC TGCGGTATGCCCTGC Rru_A3749 4297400 - 4298584 + | hypothetical protein Rru_A3750 4298578 - 4299216 + | hypothetical protein TERM 4760 4299223 - 4299238 + F 88 -2.4 -5.54079 | CCCCGATGACCTTGT CCGGCG CGTT CCTCGG TTTTTTGCTTTTTCC Rru_A3751 4299276 - 4300535 + | argininosuccinate synthase TERM 4761 4300567 - 4300586 + F 93 -15 -3.83026 | opp_overlap 4300567 CCAGACTTAAGCAAA GGCCCCTC TCGC GAGGGGCC TTTCGTCTGACCGGG TERM 4762 4300586 - 4300567 - f 93 -15 -3.94746 | opp_overlap 4300567 CCAGACTTAAGCAAA GGCCCCTC TCGC GAGGGGCC TTTCGTCTGACCGGG Rru_A3752 4300668 - 4301099 + | hypothetical protein Rru_A3753 4305737 - 4301226 - | hypothetical protein Rru_A3754 4306215 - 4305961 - | hypothetical protein Rru_A3755 4306905 - 4306357 - | heat shock protein Hsp20 TERM 4763 4308540 - 4308578 + G 71 -14.5 -2.61695 | gap 1, overlap 4308539 4308537 4308542 GGCCCTGCTGCTGGG GGCCCGCGTCGGGGT-GC GGTC GCTGCCCGGGCGCGGGTC GTGTTTCACCATCCG Rru_A3756 4307116 - 4309134 + | PAS/PAC sensor hybrid histidine kinase TERM 4764 4309121 - 4309145 + F 85 -9.2 -4.62772 | gap 1, overlap 4309124 CGGGAGGGGGGGCGG GCGGCGGGCCG TGAG CGGCCC-CCTC TTTGTTTGATTTCCG TERM 4765 4309124 - 4309143 + F 78 -10.6 -3.91294 | overlap 4309121 GAGGGGGGGCGGGCG GCGGGCCG TGAG CGGCCCCC TCTTTGTTTGATTTC Rru_A3757 4309293 - 4309469 + | excisionase/Xis, DNA-binding Rru_A3758 4309595 - 4309491 - | hypothetical protein Rru_A3759 4310132 - 4309608 - | hypothetical protein TERM 4766 4309799 - 4309785 - G 84 -9.2 -4.56597 | opp_overlap 4309787 4309793, overlap 4309787 GGCGGCCTGCAAAAA GCCCAG GGG CCGGGC CCTGGCTTTCGCCTT TERM 4767 4311309 - 4311355 + G 70 -10.7 -3.53563 | gap 1, opp_overlap 4311340, overlap 4311346 4311348 CCCAGCGGCCGCGAG GCCGCCGCCATCCGGG-CGATC CAGG GAACAACCTGGACGGCGGCGCC TTTGGCCGCCGCTGT TERM 4768 4311375 - 4311340 - g 73 -11 -3.68569 | gap 1, opp_overlap 4311309 4311346 4311348 CGATCCAGGGAACAA CCTGGACGGCGGC-GCC TTT GGCCGCCGCTGTCCTTG GCCAATGGCTGGGCG TERM 4769 4311453 - 4311474 + G 74 -12.3 -3.53091 | gap 1, overlap 4311451 TCGCGCATCGCCATC GCCCGGGCGA TCT TC-CCCGGGC TTTGCCCGCAGGGCT Rru_A3760 4310337 - 4311725 + | GntR family transcriptional regulator TERM 4770 4312563 - 4312508 - g 81 -14.6 -3.54459 | gap 1, opp_overlap 4312541 TCAACCGCCCGGAAA GC-GCCATCCTCGGCACCGCCGGCGTC GGC AATGCCGGCGACGCCCTGGATCGCCGC ATCGTCGAGCAGGCC Rru_A3761 4311862 - 4313154 + | hypothetical protein Rru_A3762 4313290 - 4313862 + | D-alanyl-D-alanine dipeptidase TERM 4771 4313881 - 4313901 + G 75 -13.9 -3.31144 | TGTCGGCCGCCAAGC CCGACGGCG GGC CGCCGACGG TTCTGGCCATCGACA TERM 4772 4314377 - 4314425 + G 85 -16.6 -3.36452 | gap 1 CGAAGGGCCGACGAC CCTGGCCGGCGATGGCGCCGCCC TGCT GGGCTGCGCGGTCGCCC-CCGGG TTGATCTTCGCCGAT TERM 4773 4314469 - 4314498 + G 75 -12 -3.64703 | CCGATCTGGCGGCGC GCGGCCTGGGCG AGCGTC CGCCACGGCCGC TTTACCTGCGCCCCC Rru_A3763 4313859 - 4314557 + | peptidase M22, glycoprotease Rru_A3764 4314554 - 4315063 + | GCN5-related N-acetyltransferase TERM 4774 4315066 - 4315093 + T 70 -4.3 -4.52857 | opp_overlap 4315066, overlap 4315068 GCAAGGGGCGTAAAA GGCC-GAAAACAC CTCG GT-TTTTCAGGCC TTTTGTATGACCAAT Rru_A3765 4315344 - 4315087 - | hypothetical protein TERM 4775 4315175 - 4315192 + g 70 -8.3 -3.94402 | overlap 4315191 TGATGACCCAGCGCG CGAGCCG ATCG CGGCACG TTCTTTAGCGGTTCT Rru_A3766 4315439 - 4315861 + | MucR family transcriptional regulator TERM 4776 4315892 - 4315918 + F 95 -14.4 -4.07568 | opp_overlap 4315876 CTATCGTTTCCGCAA GGCGTCGTGGTG CCA TGCCGCGACGCC TTTTCAACACGACCG Rru_A3767 4315983 - 4316405 + | ferric uptake regulator family protein Rru_A3768 4316467 - 4317267 + | ornithine-acyl[acyl carrier protein] N-acyltransferase TERM 4777 4317664 - 4317693 + G 75 -12.9 -3.38812 | gap 1, overlap 4317662 4317668 CGCGGGCGGAGATCC TCAAGCGGCTGGCC GGC GGCGAGCCGCT-GA TCTTGTTCCCCGAAG TERM 4778 4317668 - 4317690 + G 73 -14.8 -2.85545 | overlap 4317664 4317662 GGCGGAGATCCTCAA GCGGCTGGCC GGC GGCGAGCCGC TGATCTTGTTCCCCG Rru_A3769 4317264 - 4318223 + | lyso-ornithine lipid acyltransferase TERM 4779 4319345 - 4319317 - g 75 -13.7 -3.24411 | overlap 4319315 4319313 ATTCGTTCAAATATA GCCCGCGACCGGG AAC CCCGGCCGCCGCC CTGTCCGCGCAACTG Rru_A3770 4318290 - 4319693 + | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 4780 4320020 - 4319988 - g 70 -6.2 -4.25104 | opp_overlap 4320008, overlap 4319989 4320007 4320008 TGGTGGCGATCAAAA CCCGCAAGCGCG AGATCAAGG CGCGCTCGCCGA TGCAGGCCCGCTATC Rru_A3771 4319690 - 4320658 + | PhoH-like protein Rru_A3772 4320648 - 4321250 + | hypothetical protein Rru_A3773 4321247 - 4322203 + | CBS domain-containing protein TERM 4781 4322258 - 4322280 + G 72 -14.8 -2.74012 | overlap 4322269 CGGGCTGAGCGGCTG GCGCGGTCGC GGC GCGGCCGTGC TGCTTGGCCTGCTGG TERM 4782 4322269 - 4322316 + G 72 -11.9 -3.57561 | gap 2, overlap 4322258 GCTGGCGCGGTCGCG GC-GCGGCCGTGCTGC-TTGGCC TGCT GGCCAGCGCCGCCCTGCCGCCGC TTTACGCCCTTCCCC TERM 4783 4322812 - 4322868 + G 75 -9.3 -4.07568 | gap 3, opp_overlap 4322807, overlap 4322813 ACGACGACAAGCCGA TGGCGCGCCGCC-GCCTG-CTGGCCGGC CTTG GCCTGCCGCTCGGGCTGGTGG-GCGCCC TTTTCGCGGCGGGAA TERM 4784 4323176 - 4323134 - g 70 -11 -3.53444 | CGAGGCGGCGCCAAA GGCCGGGGCGCTGATCACCG GGG CGCCACGCCGCACCCCGGCC GACGAACCGCTACAA Rru_A3774 4322205 - 4323800 + | apolipoprotein N-acyltransferase TERM 4785 4324017 - 4324043 + G 91 -13.6 -4.29227 | ATCGATCCTCTTCGA CCACGCCCGGCC CTG GGCCCGTCGTGG TTTCTTCGTCCTTCC TERM 4786 4324055 - 4324087 + G 70 -10.6 -3.53444 | gap 1 GTGGTTTCTTCGTCC TTCCGG-CCGTCCCT GGGT GGGGATGGGCCGGGA TTTCCCACCGGCTCC Rru_A3775 4323959 - 4324591 + | XRE family transcriptional regulator TERM 4787 4324725 - 4324667 - f 78 -2.4 -5.07567 | gap 2, opp_overlap 4324689, overlap 4324668 4324669 CGACATGCCAAAAAA CCCCCTTCAATCGTTGGGAGAAGGACGC CGTCC GCGCCCTTCTCCCAAT--CCGATCCGGG GTTGGAGGAAACAGT Rru_A3776 4324739 - 4325908 + | S-adenosylmethionine synthetase trmB 4325901 - 4326668 + | tRNA (guanine-N(7))-methyltransferase TERM 4788 4326737 - 4326755 + G 100 -16 -5.79595 | GTGGGGCTGGCGGGG GGTGGGCC GTC GGCCCACC TTTTTTGTTTTCGCC Rru_A3778 4326714 - 4327391 + | hypothetical protein TERM 4789 4328171 - 4328138 - g 91 -16.1 -3.85092 | gap 1 ATCATCGAGATCAAA TCGGTGGCGCGCGATC CCG GATCGCGCGCCAA-GA TCGCCGTGCTGTCCA nusA 4327448 - 4328998 + | transcription elongation factor NusA TERM 4790 4329292 - 4329253 - g 74 -9.9 -3.86897 | opp_overlap 4329260 4329275 4329278 4329279 GCGATGTGGTAGAAA CG-GCGGCGGCCAAGGGCG TCTT CGCCCG-GGCCGCCAAGCG GGCCGTCGTTTTGCC Rru_A3780 4328991 - 4329782 + | hypothetical protein TERM 4791 4329856 - 4329874 + F 75 -8 -4.25104 | ACAGGCGATGCGAAG CCGCGGCG AGA TGCCCCGG TTTTGGTCGCGAAGG TERM 4792 4329949 - 4329934 - f 73 -10.4 -3.59979 | overlap 4329938 CCGTGGTAGCGGAAA CGGACC GGCC GGTCCG GATGAATGGGAGCAA TERM 4793 4330492 - 4330514 + G 72 -14.9 -2.71364 | CCGGCGCCGACCCGC TCGGGTCCG CGCCC CGGACCCGA TGCTTCGGCCCGTCC TERM 4794 4330815 - 4330782 - g 75 -3 -4.72729 | gap 1, overlap 4330783 CAAGCAAAAGGAAAA GCGCAAGGCCG-AGA TGATG TCTCCGGCCGAGCGG GTGGTGCGCGAGGTC infB 4329955 - 4332576 + | translation initiation factor IF-2 TERM 4795 4332552 - 4332598 + F 84 -10.1 -4.20918 | gap 2, opp_overlap 4332556, overlap 4332553 CGAGTGCTTCGAGAT G-GAAGAGG-TGGCCGCCGTCCT TTA AGGGCGGCGACCCTCCCCTTCTC TTTCTTCCCCTTGCG TERM 4796 4332553 - 4332596 + F 88 -13.8 -3.70139 | gap 1, opp_overlap 4332556, overlap 4332552 GAGTGCTTCGAGATG GAAGAGG-TGGCCGCCGTCCT TTA AGGGCGGCGACCCTCCCCTTC TCTTTCTTCCCCTTG TERM 4797 4332592 - 4332556 - f 72 -12.1 -3.12351 | opp_overlap 4332553 4332552 TGCTTCGAGATGGAA GAGGTGGCCGCCGTCCT TTA AGGGCGGCGACCCTCCC CTTCTCTTTCTTCCC TERM 4798 4332622 - 4332677 + F 100 -19.1 -4.07885 | gap 3, opp_overlap 4332624 CCTTGCGGGGTGGAA CAGGTCCGCCGGC-CGGAA-G-CGGGGC ATC GCCCTGGCCTTCCGCGCCGGCGGAACAG TTTTAACAAGAGGTC TERM 4799 4332675 - 4332624 - f 89 -18.1 -3.01712 | gap 3, opp_overlap 4332622 TTGCGGGGTGGAACA GGTCCGCCGGC-CGGAA-G-CGGGGC ATC GCCCTGGCCTTCCGCGCCGGCGGAAC AGTTTTAACAAGAGG TERM 4800 4333043 - 4333063 + G 81 -16.1 -3.14132 | GACGAGGTGCTGACC GGCCTGCGC AAG GCGCGGGCC TTCCTGCGCCGGGAA TERM 4801 4333300 - 4333255 - g 77 -16.7 -2.78495 | gap 1, overlap 4333250 4333252 4333270 GGACGATGAAGACGA CGACGGCGGCGAAGAGGGCCCC GGC GCGGCCGCCC-CGCCGCCGGCG GACGAGGGACGATGA rbfA 4332821 - 4333315 + | ribosome-binding factor A truB 4333312 - 4334238 + | tRNA pseudouridine synthase B Rru_A3784 4334285 - 4334554 + | SSU ribosomal protein S15P TERM 4802 4334564 - 4334594 + F 100 -15.5 -4.27316 | gap 1, opp_overlap 4334556 AAGTAAGTCGGGTCA CCGGGCAG-GACGT CAAG GCGTCGCTGCCCGG TTTTCCATTCAGGCC TERM 4803 4334988 - 4334998 + G 74 -5.4 -4.44046 | opp_overlap 4334983 4334988, overlap 4334983 4334984 GGCGCGAAGACGAAG TCGA AGT TCGA TTTCTTTCCGCTGAC TERM 4804 4336659 - 4336604 - g 90 -19.1 -3.12803 | gap 2, opp_overlap 4336603, overlap 4336619 GATCGATATCGAAGA CGACGGCACGATCAAGATCGCCTCGGC CGAT GCCGAAGCGACCCAG--CGCGCCGTCG ATTGGATCAAGGGCA TERM 4805 4336646 - 4336619 - g 80 -15.6 -3.21747 | opp_overlap 4336603, overlap 4336604 CGACGGCACGATCAA GATCGCCTCGGC CGAT GCCGAAGCGACC CAGCGCGCCGTCGAT Rru_A3785 4334832 - 4336958 + | polynucleotide phosphorylase/polyadenylase TERM 4806 4337502 - 4337481 - g 78 -13.7 -3.53012 | gap 1, opp_overlap 4337452 4337453 4337476 4337472 TGGCCGTCGCCCAAA GGCGCTGGCC CCA GGCC-GCGCC GCCCTTGGTGATTTC Rru_A3786 4337009 - 4337884 + | glycerophosphodiester phosphodiesterase Rru_A3787 4337976 - 4339373 + | 2-nitropropane dioxygenase, NPD TERM 4807 4339585 - 4339544 - g 84 -5.5 -4.93177 | opp_overlap 4339544 4339545, overlap 4339545 GAAAAATTAAGAAAA GCGGGTCTGCGCCCGACGC GTCA GCGTCTGGCCTTGGCCCGG TTAATGTTCGATGCC Rru_A3788 4339496 - 4339909 + | ferric uptake regulator family protein TERM 4808 4339963 - 4339988 + T 71 -8.2 -4.02132 | overlap 4339983 GGCTTTAGAGCCCGA GGTGCGGCGG CCAATC CCGCCGGATC TTTATCCGTTTCCGG Rru_A3789 4340688 - 4340128 - | hypothetical protein TERM 4809 4340536 - 4340572 + g 80 -9.1 -4.28361 | opp_overlap 4340521, overlap 4340548 GGCGAATCGGGGAAG CGGCAGGCCGCTGGGCG CCT CGCCCCCCGACCCGGCG TTTTCGTCGGCTTCG Rru_A3790 4340984 - 4341970 + | glycolate reductase Rru_A3791 4342381 - 4342070 - | hypothetical protein TERM 4810 4342529 - 4342486 - R 70 -3.1 -4.64598 | gap 1, opp_overlap 4342488 4342492, overlap 4342488 CAATGAGCGTAAAAA GA-GGGTGAACCACGCCT GTTACGTGT AGGCGTGGCCCTCTCATC CCCAGCCTCATACCA Rru_A3792 4343039 - 4342551 - | hypothetical protein Rru_A3793 4343844 - 4343029 - | molybdopterin biosynthesis protein TERM 4811 4343912 - 4343877 - R 100 -26.2 -4.35926 | ACGGCAAAGGGAAAA CGGCGCGGACCCCCGG GTTA CCGGGAATCCGCGCCG AGTTCAACAGCCACC TERM 4812 4343971 - 4343922 - R 72 -12.6 -3.05844 | GCGCCGAGTTCAACA GCCACCGCCCCGCCTGGGGCGA GAGCCA CCGCCCCGCCCGGGGCGAGAGC CACCACCCCGCCCGG Rru_A3794 4345019 - 4344000 - | cysteine synthase Rru_A3795 4345609 - 4345154 - | BadM/Rrf2 family transcriptional regulator Rru_A3796 4346880 - 4345606 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 4813 4345975 - 4346005 + g 87 -14.6 -3.76186 | overlap 4345971 4345978 ATTGGGGCTGAGGGC GAGGACCGGCGGCG GCG CGCCGGCGGCCTTC TTGGTTTTATGGGTC TERM 4814 4345978 - 4346002 + g 82 -12.7 -3.9978 | overlap 4345975 4345971 GGGGCTGAGGGCGAG GACCGGCGGCG GCG CGCCGGCGGCC TTCTTGGTTTTATGG Rru_A3797 4348771 - 4347212 - | 2-octaprenylphenol hydroxylase TERM 4815 4347971 - 4347944 - G 70 -9.8 -3.63991 | gap 1 GACCATGCTGAAGAA GGCGTTGG-CGGC GTT GCCGACCAGCACC CGGGGATCGAGGCCG Rru_A3798 4349585 - 4348773 - | 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase TERM 4816 4349010 - 4348976 - G 75 -7 -4.3255 | opp_overlap 4348976, overlap 4348985 TCTTGAAGGAATAAA GGTCGTAAAGCTGGTC AAG GACCGGCACCACCACC TTGCTGAATTCCAGG TERM 4817 4349895 - 4349947 + G 71 -3.1 -4.63218 | overlap 4349897 TGGCATGTCGGGCAG CATGACCGTTGGGCCGCTGGCCGGT CAT GCCGAACCGGGGCCCCATGATCATA TTTTGTTCGAAACCG TERM 4818 4350275 - 4350289 + G 72 -8.5 -4.07568 | overlap 4350258 4350283 CCGAGGCGCTGGTGG CGGCG ATTCG CGCCG TTTTGGGCGAAGCCA TERM 4819 4350439 - 4350477 + G 75 -3.1 -4.83169 | opp_overlap 4350451 GATGTGGCGCGGACC GGCGGCATCGAACGGA-TG GTC CAGTCCGGGCGAT-CCACC TTTTTCTGCGGGCGT Rru_A3799 4349659 - 4350504 + | DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase TERM 4820 4350563 - 4350587 + G 72 -8.5 -4.08945 | AGCCCCCGAGCCGCC GCTACCTTTCG ACT CGATCGGTAGC TTTTGCCCCCATGCT Rru_A3800 4350523 - 4350984 + | hypothetical protein TERM 4821 4350979 - 4351004 + F 74 -11.1 -3.53012 | TCCCTGGCCCCCGAC GGCTGAGCCGC GCCA GCGGCTTACCC TTTGGCGGCGGCCCC Rru_A3801 4351096 - 4351872 + | short chain enoyl-CoA hydratase TERM 4822 4351938 - 4351983 + F 78 -2.4 -5.09204 | gap 1, overlap 4351939 4351940 CATCCTATAAAGCCG CCCTTCCG-CGCGCTCTGGCT GTCCG GGCCGGAACGCGGCGGAACCC TTTTTCTTGAGATGT Rru_A3802 4352015 - 4352281 + | SSU ribosomal protein S20P