TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.671606 %AT, 1288493 nt, 6865 terms. Intergenic: 0.68868 %AT, H2T: 266985 nt, 1880 terms; T2T: 58053 nt, 917 terms; H2H: 55913 nt, 965 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|67458392|ref|NC_007109.1| Rickettsia felis URRWXCal2, complete genome (length 1485148) RF_0001 1 - 822 + | hypothetical protein trxA 914 - 1375 + | thioredoxin rfbE 1381 - 2124 + | O-antigen export system ATP-binding protein RfbE TERM 1 2293 - 2272 - g 80 -7.5 -4.18303 | ATCATAAATGATAAA GTATTTTTT TTCT AAAAAATAC TGGCGGGCAATAGCA TERM 2 2627 - 2640 + G 72 -2.4 -5.33124 | overlap 2614 ATTTGCTCATTTTCA GCAA TGTATT TTGC TTTTATTTTATTATT rfbA 2264 - 3040 + | O-antigen export system permease protein RfbA TERM 3 3626 - 3590 - g 79 -10.2 -2.78992 | overlap 3589 AGCGACTGCAAGAAG CGTGGCAATCTCATAA AAATG TCCTGAGATTGCCGCG TCGAGGCTTCGCCTC TERM 4 3661 - 3692 + G 76 -8.8 -3.39908 | gap 1, opp_overlap 3661, overlap 3660 3657 3657 3682 3684 CGCAATGACGGGAAA GT-TGATCCTGTGGC GAG GCCACGGGATGACAC TCTGTTTTCACAGGA TERM 5 3684 - 3715 + G 73 -8 -3.38522 | opp_overlap 3661, overlap 3660 3661 3657 3657 3682 TGTGGCGAGGCCACG GGATGACACTCTGT TTTC ACAGGATGACATCC TATTTAACCTCCCTC TERM 6 3943 - 3983 + G 71 -8.5 -2.79327 | gap 1, opp_overlap 3941 3945, overlap 3941 3944 TGCGAGGAGCGAAGC GA-CGTGGCAATCTCG TCAAATCTCC TGAGATTGCCACGCTC CTTTCAGTCGCGTAG TERM 7 3980 - 3945 - g 79 -10.6 -2.55544 | opp_overlap 3944 3943 3941, overlap 3941 CGAGGAGCGAAGCGA CGTGGCAATCTC GTCAAATCTCCT GAGATTGCCACG CTCCTTTCAGTCGCG gltD 3037 - 6264 + | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase lpxA 7220 - 6426 - | UDP-N-acetylglucosamine acyltransferase fabZ 7666 - 7229 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 8 7540 - 7553 + g 74 -5.3 -4.79667 | CTGTAAATTGTGGTT CGTTA ACAG TAACG TTTTTAATACCTTTT lpxD 8937 - 7897 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 9 9168 - 9132 - H 74 -5.4 -4.84359 | CTAGGTCCATAAAAA CAATAAAAAATACTAA TAATT TTAGCATTTTTAACTG GATCCCGTGGTCAAG RF_0009 9700 - 10440 + | alpha-beta hydrolase family esterase TERM 10 10528 - 10512 - f 71 -8.1 -3.31144 | overlap 10515 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 11 10541 - 10576 + F 80 -6.5 -4.91712 | gap 1, opp_overlap 10551, overlap 10551 TTCGACGAAGCAATC CAGTAA-AAAATTCTG ATTTA CAGAATTTTTTTATTG TTTTTCTGAATTGCA TERM 12 10565 - 10551 - f 77 -4.3 -5.18357 | opp_overlap 10541 10551 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTGTTTT TERM 13 10551 - 10565 + F 91 -4.3 -6.04419 | opp_overlap 10551, overlap 10541 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTGTTTT TERM 14 10838 - 10815 - f 82 -11.2 -2.59793 | opp_overlap 10809, overlap 10814 10812 10830 TTAGCTATACAATAG GGTTTAAAGT GCAA ACTTTAAACC TAAAGGCTATTATGA RF_0010 10946 - 11248 + | hypothetical protein TERM 15 11389 - 11404 + T 73 -8.2 -3.42256 | overlap 11386 11390 CACGCTCGATGTCAT TCCCGC AAAA GCGGGG TGTTGTTGCATGGCT TERM 16 11390 - 11403 + T 74 -9.5 -2.64872 | overlap 11389 11386 ACGCTCGATGTCATT CCCGC AAAA GCGGG GTGTTGTTGCATGGC TERM 17 11479 - 11493 + T 77 -4.3 -5.31456 | opp_overlap 11479 11471, overlap 11472 11487 AAATAATTAAAAAAA TTCTG ATTTA CAGAA TTTTTTCTGGATTGC TERM 18 11493 - 11479 - T 87 -4.3 -5.73672 | opp_overlap 11472 11479 11487, overlap 11471 AAATAATTAAAAAAA TTCTG ATTTA CAGAA TTTTTTCTGGATTGC TERM 19 11515 - 11531 + T 71 -8.1 -3.31144 | overlap 11518 CTGGATTGCTTCGTC GAATTAC TAT GTAATTC TTCTCGCAATGACGA RF_0011 12578 - 11601 - | ankyrin repeat-containing protein TERM 20 11840 - 11870 + g 100 -8.4 -5.61277 | opp_overlap 11845 CATTATTTTGTTCTT GTAAATAAGATGCT AAT AGCTCCTTATTTAC TTTTATTTTTTTATA TERM 21 11941 - 11957 + g 79 -6.7 -4.57482 | CCCTTTTTTACGTGA TCTTTTT TTA AAAAAGA TTTATTTATAAATGA TERM 22 12649 - 12635 - H 71 -2.9 -5.30199 | AAAAATCAACAAAAA TATGA ATATA TCATA ATAAAGGGCTTTAAG TERM 23 12879 - 12863 - H 71 -8.1 -3.31144 | overlap 12866 TCGTCATTGCGAGAA GAATTAC GCA GTAATTC GACGAAGCAATCCAG TERM 24 12902 - 12916 + H 87 -4.3 -5.89827 | opp_overlap 12902 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTTAATCCTT nifR3 13117 - 14094 + | nifR3 family TIM-barrel protein TERM 25 14185 - 14171 - f 87 -4.3 -5.73672 | opp_overlap 14171 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG RF_0013 14243 - 14626 + | hypothetical protein RF_0014 15208 - 15083 - | hypothetical protein RF_0015 15303 - 15551 + | antitoxin of toxin-antitoxin system StbD RF_0016 15554 - 15832 + | toxin of toxin-antitoxin system RF_0017 16355 - 15840 - | hypothetical protein znuA 17356 - 16343 - | Zinc/manganese ABC transporter substrate binding protein pcnB 18510 - 17353 - | Poly(A) polymerase RF_0020 19708 - 18494 - | ComEC/Rec2-related protein RF_0021 20513 - 19611 - | ComEC/Rec2-related protein TERM 26 20908 - 20882 - g 75 -8 -3.75738 | CAGTAGGAGCAATAA TCGCAATACCAT TTG AGGGTATGGCGA GCAGCAAACAAAAAG TERM 27 21718 - 21708 - g 76 -5.4 -4.93968 | ATCGACAATTAAAAA TACC CAA GGTA AAGAAAATAAAAAAC TERM 28 21744 - 21733 - g 81 -2.2 -5.95449 | AAAGAAAATAAAAAA CCGT TACA ACAG CTAAAAAAACAGATA TERM 29 22440 - 22429 - g 74 -2.2 -5.59564 | ACAAAGCTAAAAAAA CTGC AAGA GCAA ATGGACAATCATGTT TERM 30 22510 - 22498 - g 88 -3.4 -5.9362 | GAAAATATAAAAAAA CTAG AGGGA CTAG CTCTTACTCCGTCAA TERM 31 23027 - 23017 - g 71 -5.4 -4.67943 | TCGGAAGATATAAAA GCAT ATA ATGC AGAAGCAGAAAAAAG TERM 32 23417 - 23382 - g 100 -11.4 -5.62219 | opp_overlap 23393 AATACAGCAAAAAAA GCCCCTGATAATAACA AATA TGTTATTATCAGAAAC ATCAGCATTAAGTGA sca1 20794 - 25905 + | cell surface antigen Sca1 TERM 33 26049 - 26022 - f 100 -8 -5.64274 | opp_overlap 26029, overlap 26023 GTATCCAGAAAAAAA CTAAAAATACTA ATAT TAGTATTTTTAA CTAGATTCCGTGAAT TERM 34 26048 - 26023 - f 85 -9.3 -3.9748 | opp_overlap 26029, overlap 26022 TATCCAGAAAAAAAC TAAAAATACTA ATAT TAGTATTTTTA ACTAGATTCCGTGAA TERM 35 26075 - 26055 - f 75 -9.8 -2.90723 | GTATTTTTAACTAGA TTCCGTGA ATAAA TCACGGAA TGACAACAAAAAAAC RF_0023 26398 - 26718 + | hypothetical protein RF_0024 26886 - 28085 + | hypothetical protein TERM 36 28453 - 28467 + G 74 -5.8 -4.7373 | opp_overlap 28452 TTGCTAATTTAAATT CAAATA CAT TATTTG TTTTTGATAACGTAG RF_0025 28185 - 28883 + | hypothetical protein RF_0026 28998 - 30647 + | TPR repeat-containing protein atpF 31134 - 30640 - | F0F1 ATP synthase subunit B atpX 31749 - 31240 - | F0F1 ATP synthase subunit B' TERM 37 31317 - 31328 + g 73 -4.4 -5.11613 | TATCCATATCTGCTT TAGC TCCG GCTA TTTTTTCAATAATAT atpE 31992 - 31768 - | F0F1 ATP synthase subunit C TERM 38 32237 - 32183 - R 71 -6.9 -4.09108 | opp_overlap 32200, overlap 32193 32194 CTCAAGGTATATAAA TTATTACTAAC-CGAATAGCGAATTAT GTA ATAATCCGCTATTCGCATCAGTG-TAA ATTAATAGCATCATT TERM 39 32227 - 32193 - R 100 -13.8 -3.26874 | opp_overlap 32200, overlap 32183 32194 ATAAATTATTACTAA CCGAATAGCGAATTAT GTA ATAATCCGCTATTCGC ATCAGTGTAAATTAA TERM 40 32226 - 32194 - R 100 -17.3 -2.55402 | opp_overlap 32200, overlap 32193 32183 TAAATTATTACTAAC CGAATAGCGAATTAT GTA ATAATCCGCTATTCG CATCAGTGTAAATTA atpB 32957 - 32229 - | F0F1 ATP synthase subunit A TERM 41 32385 - 32375 - G 71 -6.8 -3.98716 | opp_overlap 32374 AAATCATTAATGAAA CGGT AAA ACCG GCTATTACTTTTAAT TERM 42 32905 - 32918 + g 74 -3.9 -5.21709 | overlap 32888 TCAAAACCGAACATT TTGAT GTCT ATCAA TTTTTTGATATCAAA RF_0031 33291 - 32962 - | hypothetical protein dsbG 34252 - 33416 - | protein-disulfide isomerase TERM 43 34238 - 34226 - G 88 -6.3 -5.51353 | CAAAAATAATAAAAA TATCG GCA CGATA AAAATACTTCGCATA RF_0033 34413 - 34946 + | transcriptional regulator RF_0034 36698 - 35094 - | hypothetical protein TERM 44 35543 - 35555 + g 70 -6.3 -4.29049 | opp_overlap 35543, overlap 35540 ATTGATATTTACCAA GCTTT TTA AAAGC TTCTTTTGCTACTTG TERM 45 36843 - 36808 - R 77 -9.2 -3.23598 | opp_overlap 36833 36835, overlap 36800 36812 36840 GAAGTAATTGACGAA GCAATCTCAGGAAT TTGTTACT ATTCATGAGATTGC CACGCAGTCTACGAC recF 38165 - 36903 - | recombination protein F TERM 46 37488 - 37498 + gr 70 -4 -5.06016 | ATCATCTCTTATATC TTCT GCT AGAA TTTTATTTCTCTCAT RF_0036 38823 - 38035 - | pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C RF_0037 39018 - 38833 - | dihydrofolate reductase FolA RF_0038 39458 - 39114 - | dihydrofolate reductase FolA folKP 40836 - 39448 - | folate synthesis bifunctional protein TERM 47 40690 - 40671 - G 91 -9.4 -4.40561 | overlap 40668 GTGTTTCAAAAATAA TAGATTGC TTAA GCAATCTA AAATCACAGCTTTTT RF_0040 42043 - 41384 - | hypothetical protein RF_0041 44391 - 42136 - | hypothetical protein RF_0042 44831 - 44367 - | hypothetical protein RF_0043 45059 - 45655 + | Sco2 protein precursor RF_0044 46235 - 45666 - | hypothetical protein cvpA 46470 - 47138 + | hypothetical protein TERM 48 47734 - 47706 - g 93 -9.9 -4.43309 | opp_overlap 47706 47712, overlap 47712 TAATTTTAATCAAAA CATAAATATTAAT GAT ATTAATATTTACG GTTATAGTGCAAGTA TERM 49 47945 - 47934 - g 80 -5.8 -5.09204 | opp_overlap 47933 ATATGGTAATAAAAA CGCA AAAG TGCG GGTTGATCTTTTAGA RF_0046 47449 - 48687 + | cell surface antigen-like protein Sca10 RF_0047 49122 - 50600 + | cell surface antigen-like protein Sca10 TERM 50 50739 - 50751 + GF 73 -9.1 -2.8655 | TACAAGTAGTAGCAC GCCGA AAG TCGGC TATAATGTAGGTGCA RF_0048 50536 - 50859 + | cell surface antigen-like protein Sca10 TERM 51 51003 - 50989 - f 91 -4.3 -6.04419 | opp_overlap 50989 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG RF_0049 51062 - 51643 + | transposase RF_0050 52461 - 51661 - | transposase/IS protein TERM 52 52002 - 52015 + g 73 -8.1 -3.53761 | TTTTGAATATGGAGT CCAGG TTTC CCTGG TTTAGCCCAGCATTA RF_0051 52901 - 52458 - | transposase RF_0052 53487 - 52876 - | transposase TERM 53 53610 - 53620 + r 75 -2.6 -5.53288 | opp_overlap 53610 ATTTAAAGCATGTAA TATT GTA AATA TTTTTTTAAATTAGG TERM 54 53673 - 53707 + r 74 -9.5 -2.64155 | opp_overlap 53673, overlap 53679 TCTTTAAATAATAAT TTAGAAGCGGTTGCA TATCT TGTAACTGCTTTTAA TCCATTTACAAAGGA TERM 55 53679 - 53701 + r 70 -6.3 -4.33165 | opp_overlap 53673, overlap 53673 AATAATAATTTAGAA GCGGTTGCA TATCT TGTAACTGC TTTTAATCCATTTAC TERM 56 53800 - 53786 - R 76 -3.6 -5.4593 | overlap 53798 TTAAAATAATAAAAA TCATAT ATC ACATGA TTACTATATATTATG TERM 57 54439 - 54407 - R 70 -6.5 -4.30978 | opp_overlap 54407, overlap 54408 TGGAATCCAGTAAAA CCTAAAAAATCTTTA AAA TCAAGATTTTTTAGC TTGGATCCCTGCTTT TERM 58 54438 - 54408 - R 82 -10 -3.18105 | opp_overlap 54407, overlap 54407 GGAATCCAGTAAAAC CTAAAAAATCTTTA AAA TCAAGATTTTTTAG CTTGGATCCCTGCTT RF_0053 55866 - 54547 - | putative surface antigen TERM 59 55118 - 55136 + g 70 -7.4 -3.70139 | overlap 55117 ATAGTCATAGTTTCG CCGTTTCC TAA GGAAACCG TCTTTATTCCGGTTC TERM 60 56437 - 56415 - g 74 -9.2 -3.07113 | opp_overlap 56410 56409, overlap 56417 TATTATTCCACCTAA TAGTTTTGCC CTT GGCAGAACTA TAGAATATTTTAAAA dcd 56155 - 56721 + | deoxycytidine triphosphate deaminase TERM 61 56712 - 56722 + F 77 -4 -5.36441 | AGGCGTAACTTTACC GTTA ACA TAAC TTTTTTATGTAAGAA secB 56930 - 57388 + | preprotein translocase subunit SecB czcR 57613 - 58326 + | transcriptional activator protein CzcR queF 58330 - 59151 + | 7-cyano-7-deazaguanine reductase TERM 62 59245 - 59229 - T 71 -8.1 -3.31144 | overlap 59232 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 63 59268 - 59282 + T 91 -4.3 -6.04419 | opp_overlap 59268 CAATCCAGTTAAAAA TTCTG TAAAT CAGAA TTTTTTTATTATTTT RF_0058 60017 - 59457 - | hypothetical protein pntB 61469 - 60072 - | NAD(p) transhydrogenase subunit beta TERM 64 60785 - 60774 - G 70 -7.2 -3.66356 | ATTGCTAAGCGTAAA GCCG ATAC CGGC TGCTGCAAAACCTGA ompW 62331 - 61597 - | OmpW family outer-membrane protein sam 62487 - 63371 + | S-adenosylmethionine transporter TERM 65 63435 - 63459 + G 80 -5.7 -5.03715 | TGTATTATTCGGTTA TTTTGCACCCA TAA TAGGAGCAAAA TTTTTTCCGAATGAT proP1 63358 - 64614 + | proline/betaine transporter TERM 66 64631 - 64621 - f 81 -4 -5.69023 | AAAATATGAAAAAAA TTAC AAA GTAA ATGAATTTTCAAAAT RF_0063 65057 - 65761 + | ankyrin repeat-containing protein RF_0064 65712 - 66605 + | hypothetical protein TERM 67 66638 - 66610 - f 91 -11.7 -3.47896 | opp_overlap 66606 66610, overlap 66606 CAATTAATTAAGTAA GGACAGAGGCAGG CAA CTTGCCTCTACCC TTTAATTTTTATGCT TERM 68 66610 - 66638 + F 91 -9.5 -4.3902 | opp_overlap 66610 66606, overlap 66606 CAATTAATTAAGTAA GGACAGAGGCAGG CAA CTTGCCTCTACCC TTTAATTTTTATGCT TERM 69 67586 - 67574 - g 72 -3.3 -5.20216 | overlap 67563 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAACA RF_0065 66725 - 67645 + | transposase RF_0066 67629 - 68300 + | hypothetical protein sca2 73145 - 68331 - | cell surface antigen Sca2 TERM 70 70599 - 70609 + g 74 -4 -5.26918 | ATTTGCGATTAATTG TTGA ATT TCAA TTTTTTCTAAAATAT TERM 71 72612 - 72623 + g 74 -2.2 -5.69068 | TGAGTGAATATACAG GTCT AGTA AGGC TTTTTTATCTTTTTC cysS 73318 - 74697 + | cysteinyl-tRNA synthetase TERM 72 74840 - 74813 - f 73 -9.2 -2.80443 | gap 1, opp_overlap 74808 74807 GGATATTGGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTATTCAAA rpsB 75045 - 75932 + | 30S ribosomal protein S2 TERM 73 77007 - 76994 - g 79 -2.4 -5.85737 | overlap 76982 ACACGAAGAAAAAAA CTTC GCCGAT GAAG TAGCAGCCATCACAC tsf 76101 - 77030 + | elongation factor Ts TERM 74 77092 - 77050 - f 77 -8.9 -3.27704 | gap 1, opp_overlap 77050 77054 77056 77074, overlap 77054 ACCTTTCAAAGTCAA TAAATGCGAATTTAG-ATAA GTGC TTATTCTAAATTCGTATTTA TAATATCTCTCTAAC TERM 75 77050 - 77092 + F 82 -11.1 -2.74597 | gap 1, opp_overlap 77050 77054, overlap 77054 77056 77074 ACCTTTCAAAGTCAA TAAATGCGAATTTAG-ATAA GTGC TTATTCTAAATTCGTATTTA TAATATCTCTCTAAC TERM 76 77054 - 77088 + F 77 -7.5 -4.05389 | gap 1, opp_overlap 77054 77050, overlap 77050 77056 77074 TTCAAAGTCAATAAA TGCGAATTTAG-ATAA GTGC TTATTCTAAATTCGTA TTTATAATATCTCTC TERM 77 77056 - 77086 + F 73 -7.9 -3.61175 | gap 1, opp_overlap 77054 77050, overlap 77054 77050 77074 CAAAGTCAATAAATG CGAATTTAG-ATAA GTGC TTATTCTAAATTCG TATTTATAATATCTC RF_0071 77233 - 78243 + | hypothetical protein kdtA 79658 - 78264 - | 3-deoxy-D-manno-octulosonic-acid transferase RF_0073 80311 - 79655 - | hypothetical protein TERM 78 80374 - 80358 - R 71 -8.1 -3.31144 | overlap 80361 80368 80372 80373 GCGTCATTGCGAGAA GAATTAC AAA GTAATTC GACGAAGCAATCTCA TERM 79 80416 - 80373 - R 74 -9.7 -2.78526 | overlap 80358 80372 80368 GAATTACAAAGTAAT TCGACGAAGCAATCTCA GAATATTTGA CGAGATTGCCACGTCGA TGCTACGCATCTCCT aatA 81648 - 80419 - | aspartate aminotransferase TERM 80 81242 - 81231 - G 78 -5.8 -4.91712 | CGCAATTTACAAAAA CAGG AGTT CCTG TGCTAAGTGCAACCA RF_0075 81916 - 82920 + | hypothetical protein vacJ 82925 - 83680 + | VacJ lipoprotein precursor RF_0077 83700 - 84299 + | hypothetical protein TERM 81 84387 - 84356 - f 76 -9.6 -3.15579 | gap 1, overlap 84360 84384 GTAAGTTTTGACGAA GCAATCTCA-GGAGT ATT ACTTCATGAGATTGC CGTGCAGCCTACGGC TERM 82 84411 - 84384 - f 81 -10.6 -2.80113 | gap 1, overlap 84356 TATTACTTCATGAGA TTGCCGTGCAGCC TAC GGCTGCTCG-CAA TGACGATTAGGTGTC prs 84478 - 85359 + | ribose-phosphate pyrophosphokinase TERM 83 85626 - 85610 - g 71 -8.1 -3.31144 | overlap 85613 CCGTCATTGCGAGAA GAATTAC ACA GTAATTC GACGAAGCAATCCAG TERM 84 85663 - 85649 - g 77 -4.3 -5.18357 | opp_overlap 85642 85649 CAATCCAGTAAAAAA TTCTG TAAGT CAGAA TTTTTTTAATTATTT TERM 85 85649 - 85663 + G 87 -4.3 -5.73672 | opp_overlap 85649, overlap 85642 CAATCCAGTAAAAAA TTCTG TAAGT CAGAA TTTTTTTAATTATTT alr 85356 - 86744 + | alanine racemase RF_0080 86878 - 87657 + | ABC transporter permease protein TERM 86 88026 - 88016 - g 91 -4.6 -6.08342 | opp_overlap 88019, overlap 88019 TAAGAAAGAAAAAAA CGAC CTT GCCG GTGCAAAGCTTAATT TERM 87 88302 - 88285 - g 70 -4.2 -5.02074 | opp_overlap 88285 88287 TTAGTGCCGAAAAAA TAGCTA AAGAAG TAGCTA TGATTTATCAAGGAA mkl 87660 - 88418 + | ribonucleotide ABC transporter ATP-binding protein TERM 88 88523 - 88543 + G 80 -6.3 -4.80167 | opp_overlap 88523 88527 ATATAATAAAAATAG TAATTATTC TTG GAATAGTTA TTTTAATTTTTAGTC RF_0082 88420 - 88668 + | hypothetical protein rpmB 88742 - 89035 + | 50S ribosomal protein L28 rpmE 89032 - 89268 + | 50S ribosomal protein L31 TERM 89 89875 - 89861 - f 95 -4.3 -6.25741 | opp_overlap 89861 AAATAATAAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 90 89861 - 89875 + F 77 -4.3 -5.18357 | opp_overlap 89861 AAATAATAAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG RF_0085 89980 - 90618 + | GTPase EngB argB 90566 - 91489 + | acetylglutamate kinase virB3 91502 - 91789 + | Type IV secretory pathway, VirB3-like protein virB4_1 91953 - 94370 + | type IV secretion/conjugal transfer ATPase TERM 91 94593 - 94608 + G 72 -9 -2.77899 | opp_overlap 94589, overlap 94590 TTAGTATTAAGCTTT GCCCTA AATT TAGGGC TAGTTACTAAAACCC TERM 92 95065 - 95051 - g 100 -7.2 -6.34616 | opp_overlap 95050 GGAAAATAAAAAAAA GGAATA TCA TATTCC ATATAGTGGTAAGCC virB6_1 94545 - 97961 + | TrbL/VirB6 plasmid conjugative transfer protein virB6_2 97948 - 99966 + | TrbL/VirB6 plasmid conjugative transfer protein virB6_3 99973 - 102906 + | TrbL/VirB6 plasmid conjugative transfer protein TERM 93 102990 - 102976 - f 87 -4.3 -5.73672 | opp_overlap 102976, overlap 102968 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 94 102976 - 102990 + F 77 -4.3 -5.18357 | opp_overlap 102976 102968 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 95 103013 - 103029 + F 71 -8.1 -3.31144 | overlap 103016 CTGGATTGCTTCGTC GAATTAC TGT GTAATTC TTCTCGCAATGACGG virB6_4 103135 - 105807 + | TrbL/VirB6 plasmid conjugative transfer protein virB6_5 105951 - 109418 + | TrbL/VirB6 plasmid conjugative transfer protein vapB2 109503 - 109739 + | antitoxin of toxin-antitoxin system VapB TERM 96 109858 - 109828 - g 89 -7.8 -5.03715 | opp_overlap 109839 ATTACTGGCAAAAAA TAATACTATTGCTA TTT CATCAATAGTATTA GCAGAACTTCAATAT vapC2 109736 - 110140 + | toxin of toxin-antitoxin system pta 110265 - 111314 + | phosphate acetyltransferase ackA 111250 - 112473 + | acetate kinase RF_0098 112672 - 112956 + | hypothetical protein trmD 113044 - 113748 + | tRNA (guanine-N(1)-)-methyltransferase rplS 113767 - 114183 + | 50S ribosomal protein L19 RF_0101 114492 - 115244 + | transposase RF_0102 115319 - 115480 + | transposase TERM 97 115501 - 115489 - T 72 -3.3 -5.20216 | opp_overlap 115493, overlap 115478 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAATG RF_0103 116431 - 115583 - | transposase TERM 98 116626 - 116612 - R 95 -4.3 -6.15536 | opp_overlap 116604 116612 AAGGAAGAAAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT TERM 99 116612 - 116626 + r 87 -4.3 -5.73672 | opp_overlap 116612, overlap 116604 AAGGAAGAAAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT secG 117232 - 116930 - | preprotein translocase subunit SecG RF_0105 117729 - 117487 - | transposase TERM 100 117558 - 117518 - G 79 -4.8 -5.16237 | gap 2, opp_overlap 117521 117546 117553, overlap 117522 AATTTTATTAAAAAA TGAGCCATAGCCGCATTCCA ATT TGGTATG-GGC-ATGGACCA TTTTTTGGTCATGTA TERM 101 117546 - 117558 + g 72 -3.3 -5.20216 | opp_overlap 117522 117518, overlap 117521 117553 CATTCCAATTTGGTA TGGGC ATG GACCA TTTTTTGGTCATGTA RF_0106 118757 - 117804 - | transposase parC 120992 - 118779 - | DNA topoisomerase IV subunit A TERM 102 121084 - 121068 - R 71 -8.1 -3.31144 | overlap 121071 121074 CCGTCATTGCGAGAA GAATTAC GAA GTAATTC GACGAAGCAATCTCA TERM 103 121119 - 121091 - R 71 -8.1 -3.19425 | overlap 121116 AAGTAATTCGACGAA GCAATCTCAGGAC TTT GGCACGAGATTGC CACGCAGCCTATGGC TERM 104 121143 - 121116 - R 72 -9.2 -2.78596 | gap 1, overlap 121091 GACTTTGGCACGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGACTGTGTATC RF_0108 122006 - 121332 - | hypothetical protein TERM 105 122122 - 122095 - R 73 -9.2 -2.80113 | gap 1, overlap 122067 TATTACTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATGAAAACCT argS 123870 - 122140 - | arginyl-tRNA synthetase dgt 125027 - 123876 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein iscA1 125133 - 125585 + | Iron-sulfur cluster assembly accessory protein TERM 106 125678 - 125664 - T 87 -4.3 -5.73672 | opp_overlap 125664 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG TERM 107 125793 - 125776 - T 77 -9.9 -2.78596 | GAGCTGGGTACTAGA TTCCTGC TTTC GCAGGAA TGACATCGCAACGTC RF_0112 129921 - 125851 - | hypothetical protein TERM 108 126472 - 126490 + g 74 -3.2 -5.40625 | GAATTTATTTTTGTC TATATTTG CTT CTAATATA TTTTTTATATCATCT TERM 109 129365 - 129350 - G 70 -4 -5.00616 | opp_overlap 129359, overlap 129357 TGTCCGCTTAAAAAA CAACTA AGAG TAGTCG CTCCTACTCCGTTCA TERM 110 129470 - 129486 + g 75 -8 -3.67634 | overlap 129468 TTTAAAAGCTTATTA CCGTTC TTTAT GAACGG TCTTTTCAACTCATG TERM 111 129566 - 129589 + g 74 -4 -5.28942 | TTTCGAGCTTTTGTT TTCTTTAAAT ATGT ATTTACAGAA TTTTTATTTAAAATA TERM 112 130584 - 130598 + r 90 -5.8 -5.56263 | opp_overlap 130584, overlap 130577 ACATTTATTTACAGA TAATCT CTA AGATTA TTTTTCTTTTGTAAT kdsA 131420 - 130596 - | 2-dehydro-3-deoxyphosphooctonate aldolase RF_0114 131773 - 131456 - | hypothetical protein TERM 113 131564 - 131586 + g 78 -2 -5.81412 | opp_overlap 131568, overlap 131565 131568 ATCATAATTACCATG ATAATAACCT TCT AGGTTAATAA TTTTTTTTAAATAAA abcT1 133443 - 131776 - | putative ABC transporter ATP-binding protein RF_0116 134495 - 133635 - | ParB-like partition proteins soj 135249 - 134482 - | ATPase involved in chromosome partitioning gidB 135824 - 135246 - | glucose-inhibited division protein B gidA 137673 - 135805 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 114 136063 - 136045 - G 71 -7.5 -3.40597 | opp_overlap 136043 136037, overlap 136043 136052 TTGTCTAGTTAAATA TGAAGCA TATTT TGCTTCA ATATAGAGTAATTGC TERM 115 136076 - 136097 + g 89 -8.9 -4.42806 | opp_overlap 136075 136076 TCAATATAGAGTAAT TGCAAAATA TTAT TATTTTGCA TTTCTTTAAGCATAG TERM 116 136097 - 136076 - G 72 -8.9 -2.62255 | opp_overlap 136076, overlap 136075 TCAATATAGAGTAAT TGCAAAATA TTAT TATTTTGCA TTTCTTTAAGCATAG TERM 117 136280 - 136292 + g 79 -3.5 -5.63857 | overlap 136285 136286 TCTATATCTTCACAT TTTTT TGT AAAAA TTTTTTTACGTTTTT ndk 138099 - 137677 - | nucleoside diphosphate kinase uhpC 139418 - 138129 - | sugar phosphate permease TERM 118 138683 - 138663 - G 71 -5.5 -4.64048 | overlap 138659 138665 TATTATATAAACAAA CATGTTTGC TAA ACAAACATA CCATATTAGCTTATT TERM 119 139446 - 139466 + r 100 -12.7 -5.79595 | opp_overlap 139446 CCGACTATAAAAAAA GCAAGTTTC TGA GAAACTTGC TTTTTTATTTTAACA TERM 120 139466 - 139446 - R 100 -12.7 -5.67063 | opp_overlap 139446 CCGACTATAAAAAAA GCAAGTTTC TGA GAAACTTGC TTTTTTATTTTAACA tlc1 140982 - 139486 - | ADP,ATP carrier protein TERM 121 140897 - 140887 - G 71 -6.8 -4.09173 | ACAGAACATCATAAA TGCC ATA GGCA AAAACTTCTTATTTT TERM 122 141530 - 141516 - g 70 -7.2 -3.61268 | GACGGAATCCTTAAA CCATTT ATA AAATGG GCAGGGGGAAAAAGA dam 141399 - 142298 + | site-specific DNA adenine methylase TERM 123 142776 - 142766 - f 72 -2.6 -5.48028 | TAAATAAAAAGAAAA TATA GGT TATA CAAATATATAATTCC def3 142802 - 143476 + | polypeptide deformylase RF_0125 143921 - 143745 - | hypothetical protein RF_0126 144648 - 143902 - | hypothetical protein RF_0127 145563 - 144931 - | tellurite resistance protein-related protein TERM 124 145717 - 145731 + H 95 -4.3 -6.15536 | opp_overlap 145709 145717 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTTTCTTCCTT TERM 125 145731 - 145717 - H 87 -4.3 -5.73672 | opp_overlap 145717, overlap 145709 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTTTCTTCCTT TERM 126 145755 - 145771 + H 75 -8.1 -3.67597 | overlap 145758 CTTCCTTGCTTCGTC GAATTAC TGC GTAATTC TTCTTAGCTCAGACG RF_0128 145799 - 146224 + | hypothetical protein TERM 127 146309 - 146279 - T 79 -8.6 -3.8512 | opp_overlap 146286, overlap 146286 TATCCAGGAGAATAA TAAAAAATACTAAT ATT ATTAGTATTTTTAA CTGGATTCCGTGAAT TERM 128 146302 - 146286 - T 100 -6.7 -5.68489 | opp_overlap 146286, overlap 146279 GAGAATAATAAAAAA TACTAAT ATT ATTAGTA TTTTTAACTGGATTC TERM 129 146286 - 146302 + T 79 -6.7 -4.68424 | opp_overlap 146286 146279 GAGAATAATAAAAAA TACTAAT ATT ATTAGTA TTTTTAACTGGATTC RF_0129 146906 - 146328 - | hypothetical protein pgsA 147467 - 146922 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase yidC 149153 - 147471 - | putative inner membrane protein translocase component YidC TERM 130 147786 - 147774 - G 71 -9.1 -2.53213 | opp_overlap 147782, overlap 147783 TAAGTCTTTAATCCA GCCGT AAA ACGGC ACTTGCCGCATTTCA TERM 131 147794 - 147783 - G 74 -7.2 -4.1196 | opp_overlap 147782, overlap 147774 AATCCAGCCGTAAAA CGGC ACTT GCCG CATTTCAATAGTTAC TERM 132 148211 - 148228 + g 70 -7.1 -3.70546 | CAAGCAAATCTACTT TTTTTGC TCCT GCAAAAA TTCTGCTTTTAATGG TERM 133 149200 - 149184 - R 75 -8.1 -3.59262 | opp_overlap 149184 149183 TTTCATATTTTTAAA GCTTTAA GTT TTAAAGC ATTTAGAGAAAATAA TERM 134 149290 - 149257 - R 89 -11.9 -3.19038 | opp_overlap 149253 149271, overlap 149264 TTCAAAAGTAGTGAA TATCCAAGATGAAGG GTGG CTTCCATCTTGGATA CAAATTTAACTTCAG RF_0132 150477 - 149311 - | hypothetical protein lgt 150719 - 151498 + | prolipoprotein diacylglyceryl transferase TERM 135 152191 - 152173 - g 77 -3.8 -5.48825 | opp_overlap 152177, overlap 152174 CAGCATCTAAAAAAA CTAAGCGG CAG CTGCTTAA TAATAGATTACGGCT RF_0134 151477 - 152700 + | hypothetical protein RF_0135 153113 - 152697 - | hypothetical protein sdhB 153932 - 153147 - | succinate dehydrogenase iron-sulfur subunit TERM 136 153353 - 153335 - G 74 -9.6 -2.62389 | overlap 153334 CAATCCATCGATAAG CCTGCAAT AAA ATCGCAGG ACCCAAATATTTATC TERM 137 153717 - 153729 + g 72 -3.4 -5.13016 | CCTGAACGTTAGAGT CGAA TCGAT TTCG TTTTTGATTTTAATT RF_0137 154766 - 154251 - | site-specific DNA methylase RF_0138 155178 - 154861 - | site-specific DNA methylase ftsH 157111 - 155204 - | ATP-dependent metalloprotease FtsH TERM 138 156454 - 156444 - G 71 -5.4 -4.6759 | opp_overlap 156444 AACATTTCAACAAAA TCAG AGC CTGA TATGCTAAAAAACGG tilS 158625 - 157333 - | tRNA(Ile)-lysidine synthetase TilS TERM 139 158847 - 158833 - R 91 -4.3 -6.04419 | opp_overlap 158833 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTAGATTG TERM 140 158922 - 158903 - R 81 -4.4 -5.39721 | gap 1, opp_overlap 158903 TGACGATAGAAAAAA TTTATGCTG ACT CAGC-TAAA TCTTCTGAAGTTTCA rplI 159419 - 158904 - | 50S ribosomal protein L9 rpsR 159718 - 159431 - | 30S ribosomal protein S18 TERM 141 159639 - 159663 + g 80 -7.3 -4.57755 | GGGCATCCTTTACGT CTTCTAAAAAA CAC TTTTTTAGCAG TTTTATCTCCTACCT rpsF 160108 - 159743 - | 30S ribosomal protein S6 RF_0144 160292 - 160660 + | hypothetical protein TERM 142 161002 - 161015 + F 74 -3.9 -5.13648 | opp_overlap 161002 AGATAGCGACTAGAA TTTTG TTGT CAAAA TTTTCTTTGTATTTA TERM 143 162332 - 162302 - g 82 -10 -3.34233 | opp_overlap 162311, overlap 162306 162311 TTATAAGCTGTATAA TCAATTAAATACCT TAA AGGTATCTAATTAA GCATTATTAAATAAA TERM 144 162328 - 162306 - g 76 -8.6 -3.4489 | opp_overlap 162311, overlap 162302 162311 AAGCTGTATAATCAA TTAAATACCT TAA AGGTATCTAA TTAAGCATTATTAAA aco1 161139 - 162332 + | Acyl-CoA desaturase 1 TERM 145 163445 - 163457 + G 82 -7.7 -4.66163 | CTACCCGCAAAATTC GCTTG GAT CAAGC TTTTTAAATGACGCT gcp 162528 - 163697 + | O-sialoglycoprotein endopeptidase TERM 146 163738 - 163762 + F 100 -13.1 -2.98823 | opp_overlap 163741, overlap 163741 TAGTAGTATGATATG TAATTACCATG TTT CATGGTAATTA TCTATATAAAAAAGA TERM 147 163759 - 163741 - f 83 -10.4 -3.14944 | opp_overlap 163738 163741 TAGTATGATATGTAA TTACCATG TTT CATGGTAA TTATCTATATAAAAA TERM 148 163741 - 163759 + F 87 -10.4 -3.64198 | opp_overlap 163741, overlap 163738 TAGTATGATATGTAA TTACCATG TTT CATGGTAA TTATCTATATAAAAA RF_0147 163787 - 164278 + | hypothetical protein TERM 149 164327 - 164286 - T 80 -9.2 -3.67976 | gap 2, opp_overlap 164282 164282 164296, overlap 164287 164290 GTTATTAACTCTAAA TTGACCCGAATTATGGATAA ATCT TTATCCATAATTCG-GT-AA GTAATATTTCTTTTT TERM 150 164327 - 164287 - T 83 -10.8 -2.80464 | gap 1, opp_overlap 164282 164282 164296, overlap 164286 164290 TTATTAACTCTAAAT TGACCCGAATTATGGATAA ATCT TTATCCATAATTCG-GTAA GTAATATTTCTTTTT TERM 151 164325 - 164290 - T 100 -15 -2.66326 | opp_overlap 164282 164282 164296, overlap 164286 164287 TTAACTCTAAATTGA CCCGAATTATGGATAA ATCT TTATCCATAATTCGGT AAGTAATATTTCTTT TERM 152 164296 - 164319 + T 76 -9.8 -3.08642 | opp_overlap 164290 164286 164287, overlap 164282 164282 CTAAATTGACCCGAA TTATGGATAA ATCT TTATCCATAA TTCGGTAAGTAATAT RF_0148 165120 - 164347 - | hypothetical protein RF_0149 165633 - 165277 - | ClpB protein RF_0150 167853 - 165727 - | ClpB protein RF_0151 167966 - 169132 + | hypothetical protein RF_0152 169613 - 169948 + | hypothetical protein TERM 153 170029 - 170019 - g 77 -4 -5.32944 | TTTAGAATTAAAAAA TAAG GGT CTTA CGGTAGTTGCTAATT phbB 169948 - 170673 + | acetoacetyl-CoA reductase RF_0154 170700 - 172304 + | hypothetical protein TERM 154 172404 - 172394 - gf 91 -5.4 -5.72616 | ACTGATAGAAAAAAA GCAT TAG ATGC AATAAAGTTAGAGTC RF_0155 172226 - 172612 + | hypothetical protein TERM 155 173250 - 173265 + G 74 -9 -3.07487 | overlap 173249 CTTCAGATTATCGCA GCCCAA GAGC TTGGGC ATTTTGCCGATATAA RF_0156 172626 - 173948 + | hypothetical protein RF_0157 174157 - 174444 + | hypothetical protein TERM 156 174515 - 174505 - f 71 -5.4 -4.62872 | overlap 174508 ATGAAGTTGGAAAAA TACG TCC CGTA AGGCACTGTCCAAAT RF_0158 174533 - 175486 + | transposase TERM 157 175732 - 175772 + G 79 -4.8 -5.16237 | gap 2, opp_overlap 175721 175732 175734, overlap 175736 TACATGACCAAAAAA TGGTCCAT-GCC-CATACCA AAT TGGAATGCGGCTATGGCTCA TTTTTTAATAAAATT TERM 158 175744 - 175732 - g 72 -3.3 -5.20216 | opp_overlap 175732 175736, overlap 175721 175734 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAATG RF_0159 175561 - 175803 + | transposase TERM 159 175830 - 175843 + F 81 -4.5 -5.45726 | opp_overlap 175830 AGTTTACACACTTAA TCGGG AAGA CTCGA TTTTTTTGAAATATG RF_0160 176012 - 176338 + | hypothetical protein TERM 160 176503 - 176476 - T 73 -9.2 -2.8001 | gap 1, opp_overlap 176471 ATAAGGTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTTAATATC tlc5 178065 - 176566 - | ADP,ATP carrier protein TERM 161 177368 - 177354 - G 76 -7.2 -4.31697 | overlap 177351 177356 177357 177360 ACACACAACAAACAA TAGCAA CAA TTGCTA CAATTGTCGTGGATA TERM 162 177377 - 177357 - G 73 -9.1 -2.82788 | overlap 177351 177354 177356 177360 CACAACAAACAATAG CAACAATTG CTA CAATTGTCG TGGATACTTGAACTA TERM 163 178154 - 178101 - H 81 -10.7 -2.89283 | gap 1, opp_overlap 178102 178102 178103 AAAAAAACTTAAGCA CTTTAGGTTCTGTATACTTTATAATC ATT AATAATAAAGTACACAGAACCTCA-G ATTTTATGAAAATAT TERM 164 178102 - 178154 + H 82 -10.2 -3.23174 | opp_overlap 178101, overlap 178102 178103 AAAAAACTTAAGCAC TTTAGGTTCTGTATACTTTATAAT CATTA ATAATAAAGTACACAGAACCTCAG ATTTTATGAAAATAT TERM 165 178102 - 178155 + H 88 -8.6 -4.39426 | gap 1, opp_overlap 178101, overlap 178102 178103 AAAAAACTTAAGCAC TTT-AGGTTCTGTATACTTTATAAT CATTA ATAATAAAGTACACAGAACCTCAGA TTTTATGAAAATATA TERM 166 178103 - 178153 + H 86 -11.5 -2.53422 | opp_overlap 178101, overlap 178102 178102 AAAAACTTAAGCACT TTAGGTTCTGTATACTTTATAAT CATTA ATAATAAAGTACACAGAACCTCA GATTTTATGAAAATA TERM 167 178829 - 178842 + G 74 -3.1 -5.4251 | TTACTTACCTGTCCG TGGGA TTTT TCTCA TTTTTTCTATATAAG phbC 178289 - 179338 + | Poly-beta-hydroxybutyrate polymerase paaJ 179335 - 180513 + | acetyl-CoA acetyltransferase TERM 168 180526 - 180551 + T 73 -9.1 -2.86636 | overlap 180525 180523 TAAATGTGCATTTGA TTATGAGACTG TTAA CAGTCTCATAC CTATTTTCGTAATTT RF_0164 181243 - 180581 - | hypothetical protein TERM 169 180773 - 180791 + g 73 -4.6 -5.0133 | opp_overlap 180771 180773 CTTTTGACCAAAATA TTTAGGAA TAT TCCCTAAA TTTTTTGCCCAACTC RF_0165 181625 - 184711 + | superfamily I DNA/RNA helicase RF_0166 185701 - 184769 - | sugar kinase TERM 170 186157 - 186192 + H 93 -8.6 -4.84359 | opp_overlap 186167, overlap 186167 CTTGACCACGGGATC CAGTTAAAAATACTAA AATA TTAGTATTTTTTATTG TTTTTATGGACCTAG TERM 171 186167 - 186182 + H 90 -4.8 -5.80727 | opp_overlap 186167, overlap 186157 GGATCCAGTTAAAAA TACTAA AATA TTAGTA TTTTTTATTGTTTTT TERM 172 186433 - 186461 + H 100 -7.3 -5.5208 | opp_overlap 186433 CCAATGAGCTGAAGA GGTCGTTTACTGC GTA GCGGGACACGGCC TTTTTTATGTTATGA TERM 173 187342 - 187326 - g 75 -9.5 -2.89413 | overlap 187325 187323 ATAAAACAGAAACAC TTGAGCT TAT AGCTCAA TATGAGCAAACCTAT RF_0167 186920 - 187402 + | hypothetical protein RF_0168 187685 - 187969 + | hypothetical protein RF_0169 187908 - 188189 + | hypothetical protein TERM 174 188256 - 188242 - T 74 -8.6 -3.31792 | opp_overlap 188234, overlap 188254 188255 GTATGACCCGTATAA CGGTTT AGC AAACCG CCGCCTTCGGCCACT TERM 175 188323 - 188341 + T 84 -5.4 -5.3321 | opp_overlap 188323 188317 188314, overlap 188317 TCTAAATTATAAAAT TTCTAGAA TTA TTTTAGAA TTTTTATTATTGATT RF_0170 189682 - 188363 - | hypothetical protein TERM 176 189157 - 189172 + g 74 -6.2 -4.5265 | TTGATAATTCTGCTA CTAGAT CGGT ATCTAG TTTTCTAATATCATT fabD 190796 - 189855 - | acyl-carrier-protein S-malonyltransferase TERM 177 190422 - 190448 + g 74 -8.8 -3.18991 | overlap 190420 190419 190446 TTCGGGACATGCTTC CTGCATAGATGT ACT ACGTATATGCAG TAGTTTTGCTGTTGT RF_0172 191256 - 191573 + | hypothetical protein TERM 178 191954 - 191968 + G 80 -5.8 -5.02476 | opp_overlap 191954 AAGCCCTAGAACTGA GAATTA TGC TAATTC TTTTTTAGAAAATAT RF_0173 191748 - 192215 + | hypothetical protein RF_0174 195653 - 193206 - | ATP-dependent helicase TERM 179 194087 - 194113 + g 90 -8.9 -4.55093 | opp_overlap 194093 ATATTCTGCTTGCGG TAGAAGGCAAA ATTTC TTTGCTTTCTA TTTGTTCTTGTATAA TERM 180 194895 - 194912 + g 74 -2.1 -5.54264 | gap 1, overlap 194898 TCTTATTAATTCTTT CGATAAAA AGC TTTTA-CG TTTTTTTCCGTCTTT TERM 181 195694 - 195721 + r 73 -9.2 -2.80443 | gap 1, opp_overlap 195684, overlap 195684 195718 ATCAATTTTTCGTCA TTGCGA-GCAGCC GCA GGCTGCGTGGCAA TCTCGTCAAATATCC surf1 196473 - 195793 - | Surfeit locus protein 1 TERM 182 196573 - 196524 - R 91 -10.3 -3.99405 | gap 1, opp_overlap 196566, overlap 196527 CTAAGCGACTACAAA GAGCGTGGCAATCTCATGAA ACAATATAAAA TTCCTGAGATTGCCACG-TC GAGGCTTTGCCTCTC TERM 183 196571 - 196527 - R 100 -13.1 -2.7439 | opp_overlap 196566, overlap 196524 AGCGACTACAAAGAG CGTGGCAATCTCATGAA ACAATATAAAA TTCCTGAGATTGCCACG TCGAGGCTTTGCCTC dnaQ 197295 - 196606 - | DNA polymerase III subunit epsilon TERM 184 197452 - 197468 + r 71 -8.1 -3.31144 | overlap 197455 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGA coaE 198116 - 197541 - | dephospho-CoA kinase TERM 185 197618 - 197638 + g 78 -7 -4.44819 | overlap 197620 CAACGCCGCTATTTA TAGCAAAA TCTGC TTTTGCTA TTTTGCTCTCTTGTG RF_0178 198922 - 198110 - | hypothetical protein TERM 186 199700 - 199678 - g 71 -2 -5.41746 | overlap 199658 199657 199690 AATTTGTGAAAAAAA TTCTAACTAA GAT TCAGCTTGAA AATTTATATTGGGAT RF_0179 199563 - 200099 + | hypothetical protein TERM 187 200526 - 200514 - g 74 -7.7 -3.85817 | ATTGCTGCCGATAAA CTTGC AGT GCAAG GAAGAGAAACTGCTA rnhA 200109 - 200567 + | ribonuclease H TERM 188 200623 - 200649 + G 74 -7.5 -3.91716 | AGATGAGTTTTTGAA TCAATATTATG AAAGC CGTAATATTGA TTATTTAGGGCGTCC RF_0181 200555 - 200854 + | hypothetical protein RF_0182 200880 - 201329 + | ABC transporter substrate binding protein TERM 189 201363 - 201384 + F 100 -6.7 -6.01369 | gap 1, opp_overlap 201362 AATCATTAAATTTAG CCG-AATCTA AAC TAGATTTCGG TTTTTTTATTGTTTA RF_0183 201491 - 201775 + | hypothetical protein RF_0184 201784 - 202236 + | hypothetical protein TERM 190 202246 - 202273 + T 80 -9.2 -3.6806 | opp_overlap 202240 202236, overlap 202247 AAGTAGTAATTTATT TCTCGGTTTAGG TAAT TCTAAACCGAGC TTTAAATAACTCTGT TERM 191 202247 - 202272 + T 100 -12.7 -2.80354 | opp_overlap 202240 202236, overlap 202246 AGTAGTAATTTATTT CTCGGTTTAGG TAAT TCTAAACCGAG CTTTAAATAACTCTG RF_0185 203118 - 202588 - | hypothetical protein TERM 192 203340 - 203363 + rH 82 -6.1 -5.05116 | opp_overlap 203340 ATCTTATTCAATCCA TGAAGTGTA TTAAGT TGCACTTCA TTTTCTTATTTATCG TERM 193 203781 - 203800 + Gr 70 -6.5 -4.28045 | ATTATGGCGAATGCT CCTACTT ATGAAC AAGTAGG TTATTTTGCTGCTGT RF_0187 205218 - 204700 - | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4 proP10 203457 - 204767 + | proline/betaine transporter RF_0188 205431 - 205261 - | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein SpoT4 RF_0189 205795 - 205556 - | hypothetical protein TERM 194 205893 - 205920 + H 85 -8 -4.51799 | opp_overlap 205886 205893 205915, overlap 205886 205915 AAAATAAGTCAATAA CTATAATTATTG ATTG TAATAATTATAG TTTTATAAATTTAAT TERM 195 205920 - 205893 - H 72 -7.3 -3.80464 | opp_overlap 205886 205893 205915, overlap 205886 205915 AAAATAAGTCAATAA CTATAATTATT GATTGT AATAATTATAG TTTTATAAATTTAAT RF_0190 206476 - 206877 + | hypothetical protein tgt 206923 - 208008 + | queuine tRNA-ribosyltransferase ligA 208171 - 210291 + | NAD-dependent DNA ligase LigA TERM 196 210325 - 210297 - f 100 -14.8 -4.27192 | overlap 210321 AAATGTTTAGGAAAA GTAACTGTTGCA TTTTT TGCAACAGTTAC CACCGATGGTAAAGC TERM 197 210581 - 210551 - g 100 -15.6 -3.63046 | overlap 210552 AGGAGAACTAGATAA TGCAGTATGTGCAA ATT TTGCACATACTGCC GCTGACGGTAAAATA TERM 198 210580 - 210552 - g 100 -19.1 -2.77104 | overlap 210551 GGAGAACTAGATAAT GCAGTATGTGCAA ATT TTGCACATACTGC CGCTGACGGTAAAAT RF_0193 210363 - 210773 + | hypothetical protein RF_0194 211237 - 212007 + | hypothetical protein RF_0195 212154 - 213008 + | periplasmic protein TERM 199 214129 - 214119 - g 72 -2.6 -5.40004 | TATTAAATGAAAAAA TTTT TAA AAAA GCTCAGATATTTAAT lpxK 213170 - 214147 + | tetraacyldisaccharide 4'-kinase htrB 214110 - 214982 + | lipid A biosynthesis lauroyl acyltransferase bcp 215592 - 215125 - | bacterioferritin comigratory protein RF_0199 215882 - 216166 + | hypothetical protein RF_0200 216217 - 216678 + | hypothetical protein himA 216818 - 217105 + | integration host factor alpha-subunit RF_0202 217095 - 217541 + | hypothetical protein RF_0203 217545 - 218528 + | Beta-glucosidase spoT11 218905 - 219510 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein TERM 200 219618 - 219584 - f 100 -19 -2.52896 | opp_overlap 219589 219594, overlap 219589 219594 GTAGGCGGGAATCCA GTAAAGTAAAGCTTTT TTT AAAAGCTTTACTTTAC AAAAACTATGTAATA TERM 201 219589 - 219613 + F 100 -13.1 -3.54129 | opp_overlap 219589 219584 219594, overlap 219594 CGGGAATCCAGTAAA GTAAAGCTTTT TTT AAAAGCTTTAC TTTACAAAAACTATG TERM 202 219613 - 219589 - f 100 -13.1 -3.794 | opp_overlap 219589 219594, overlap 219584 219594 CGGGAATCCAGTAAA GTAAAGCTTTT TTT AAAAGCTTTAC TTTACAAAAACTATG TERM 203 219608 - 219594 - f 74 -7.2 -4.10953 | opp_overlap 219589 219594, overlap 219589 219584 ATCCAGTAAAGTAAA GCTTTT TTT AAAAGC TTTACTTTACAAAAA TERM 204 219594 - 219608 + F 74 -7.2 -4.05788 | opp_overlap 219594 219589 219584, overlap 219589 ATCCAGTAAAGTAAA GCTTTT TTT AAAAGC TTTACTTTACAAAAA TERM 205 219661 - 219632 - f 85 -11.1 -3.21827 | opp_overlap 219639, overlap 219639 ACAAAAACTATGTAA TAAAAAATCTTTA ATTT TAAAGATTTTTTA GTCTGGATCCCCGCT TERM 206 219654 - 219639 - f 82 -4.8 -5.4833 | opp_overlap 219639, overlap 219632 CTATGTAATAAAAAA TCTTTA ATTT TAAAGA TTTTTTAGTCTGGAT TERM 207 219639 - 219654 + F 79 -4.8 -5.22312 | opp_overlap 219639 219632 CTATGTAATAAAAAA TCTTTA ATTT TAAAGA TTTTTTAGTCTGGAT TERM 208 219885 - 219923 + F 71 -5.4 -4.73614 | ATATTAGGTTATTTC CTTATCAAATGCGGGATA TAT TGACTTGTGTTTGATAAG TTTGTTTTAATACTA TERM 209 220126 - 220100 - g 87 -10.2 -3.78879 | overlap 220103 CACAGCAGAATAGAA CAACAGTCGGAG CTG CTACAACTGTTG ACGGTGCGGGATTTG TERM 210 220157 - 220171 + G 72 -8.6 -3.15544 | opp_overlap 220149 220165, overlap 220166 220167 ACCAAACTGCCGCTC CTGCAA ATC TTGCAG TTGCTCCAAATGCAG rompB 219976 - 224940 + | Outer membrane protein B TERM 211 224930 - 224962 + F 77 -10.2 -2.70354 | gap 1, opp_overlap 224934, overlap 224934 224937 CTTTAAAAGTACGTG TAAACTT-CTAATCG CTCC CGATTAGTAAGTTTA TAACTTTCTAAAGAA TERM 212 224934 - 224958 + F 71 -6.6 -4.04319 | gap 1, opp_overlap 224934, overlap 224930 224937 AAAAGTACGTGTAAA CTT-CTAATCG CTCC CGATTAGTAAG TTTATAACTTTCTAA TERM 213 224984 - 225005 + F 100 -7.3 -6.25741 | opp_overlap 224984 TCTAAAGAAAAAAGA GCTCTCTTT GAAA AAAGGGGGC TTTTTTTTATTCTTT TERM 214 225150 - 225178 + F 73 -7.7 -3.75803 | AGCGGGGATCCAGGC TAAAAAATCTTAA TTT TAAAGATTTTTTA TTATATCGTTTTTTT TERM 215 225358 - 225342 - f 71 -8.1 -3.32844 | overlap 225345 225348 TCGCCTATGCGAGAA GAATTAC GAA GTAATTC GACGAAGCAATCCAG TERM 216 225381 - 225395 + F 91 -4.3 -6.04419 | opp_overlap 225381, overlap 225374 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 217 225395 - 225381 - f 77 -4.3 -5.18357 | opp_overlap 225381 225374 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT RF_0206 225597 - 227831 + | hypothetical protein ccmF 229849 - 227828 - | cytochrome c-type biogenesis protein CcmF TERM 218 228695 - 228722 + g 78 -9.3 -3.41961 | gap 1, opp_overlap 228663, overlap 228663 228660 228699 ACGAAAGTGGCTGCG GCAATCTC-GGA TAGTT TCCTGAGATTGC TTCGTTAATGCTGAT RF_0208 231116 - 229842 - | hemolysin-like protein RF_0209 233237 - 231378 - | hypothetical protein TERM 219 232175 - 232196 + g 76 -9.5 -3.1485 | opp_overlap 232174, overlap 232178 GTTGAGTTATAGGAG GGACAGCAA CTAC TTGCTGTTC TTGCGTCATTGCTTC TERM 220 232178 - 232193 + g 73 -7.6 -3.70853 | opp_overlap 232174, overlap 232175 GAGTTATAGGAGGGA CAGCAA CTAC TTGCTG TTCTTGCGTCATTGC TERM 221 233055 - 233069 + g 74 -5.6 -4.89393 | overlap 233056 AAAAATCGGTGTTTT GCCCTC TTT GAGGGA TTTTTCTAAGATTTC TERM 222 233056 - 233068 + g 78 -9.1 -3.52551 | overlap 233055 AAAATCGGTGTTTTG CCCTC TTT GAGGG ATTTTTCTAAGATTT lolD 233967 - 233302 - | lipoprotein releasing system ATP-binding protein LolD RF_0211 235207 - 233960 - | lipoprotein releasing system, transmembrane protein TERM 223 234202 - 234186 - G 76 -7.3 -4.29907 | ATATTATAAGAGAAA GTAACCC CAA GGATTAC ACCTAGTGTTGTGCC TERM 224 234269 - 234253 - G 76 -5.2 -5.03994 | opp_overlap 234256 CGTTATAGATAAAAA TAAGCA TTATT TGCTTA GTGCTTGCTCCCATA bcr2 236509 - 235334 - | bicyclomycin resistance protein TERM 225 236651 - 236667 + r 74 -5.2 -4.91712 | opp_overlap 236651, overlap 236636 AAAAAAATGTTAAAA TTAGCA TTTTT TGCTAA TTTTTCTGGATTGCC RF_0213 237342 - 237094 - | hypothetical protein TERM 226 237412 - 237424 + r 79 -3.5 -5.67063 | opp_overlap 237412, overlap 237403 TCAAGCTAAATTATA TTTAA TAT TTAAA TTTTTTTATACTACG TERM 227 237591 - 237607 + r 71 -8.1 -3.31144 | overlap 237594 TGAGATCGCTTCGTC GAATTAC CTT GTAATTC TTCTCGCAATGACGG msbA2 239415 - 237670 - | multidrug resistance protein TERM 228 239477 - 239532 + H 74 -8.6 -3.19157 | opp_overlap 239491 239494, overlap 239502 GAGCGAAGCGACGTG GCAATCTAGAAAAATAATAAAAAAGT ACTA ACTTTAGTATTTTTTTACTGGATTGC TTCGTCAAATTACTA TERM 229 239523 - 239494 - H 79 -6.7 -4.55383 | opp_overlap 239477 239502, overlap 239491 AATCTAGAAAAATAA TAAAAAAGTACTA ACTT TAGTATTTTTTTA CTGGATTGCTTCGTC TERM 230 239502 - 239515 + H 81 -3.9 -5.54894 | opp_overlap 239494 239491, overlap 239477 AAAATAATAAAAAAG TACTA ACTT TAGTA TTTTTTTACTGGATT RF_0215 239786 - 240031 + | hypothetical protein TERM 231 240039 - 240025 - gf 79 -7.2 -4.47307 | opp_overlap 240024 AAATGAAGATGAAAA CAAATG ACG CATTTG ATGGGTTTACTATAG RF_0216 240012 - 240383 + | hypothetical protein exsB 240358 - 241032 + | trans-regulatory protein ExsB TERM 232 241350 - 241360 + G 71 -5.4 -4.62069 | opp_overlap 241343 GAAATAAGCTATGAT CTAG ATC CTAG TTTTTGGGGTCAAGG rimJ 241029 - 241580 + | ribosomal-protein-alanine acetyltransferase TERM 233 241984 - 241968 - g 71 -8.1 -3.36273 | GTTGGTCAAGACCAA GCTAAAA AGA TTTTAGC AGTAGCGGTTTATAA TERM 234 242414 - 242374 - g 71 -7.6 -3.39432 | gap 1, overlap 242363 AAATTATGGAAGGAA CAGTTGCTTCCGTACCTCC TCAA GGCGGTA-GGAAACACCCG CAACAAGATTTCGTA clpX 241731 - 243008 + | ATP-dependent protease ATP-binding subunit TERM 235 243148 - 243132 - T 71 -8.1 -3.31144 | overlap 243135 CCGTCATTGCGAGAA GAATTAC ATA GTAATTC GACGAAGCAATCCAG TERM 236 243355 - 243315 - T 100 -13.7 -2.66316 | opp_overlap 243318 243321, overlap 243318 243336 GGCTTGACTATAGGA CAACACTAATTTAGGATAA AAT TTATCCTAAACTAATGTTA TAACGGTTTAAATAC TERM 237 243352 - 243318 - T 100 -13.2 -3.484 | opp_overlap 243318 243321, overlap 243315 243336 TTGACTATAGGACAA CACTAATTTAGGATAA AAT TTATCCTAAACTAATG TTATAACGGTTTAAA TERM 238 243318 - 243352 + T 74 -8.8 -3.3506 | opp_overlap 243318 243315 243336, overlap 243321 TTGACTATAGGACAA CACTAATTTAGGATAA AAT TTATCCTAAACTAATG TTATAACGGTTTAAA TERM 239 243321 - 243349 + T 71 -9.1 -2.54015 | opp_overlap 243318 243315 243336, overlap 243318 ACTATAGGACAACAC TAATTTAGGATAA AAT TTATCCTAAACTA ATGTTATAACGGTTT RF_0220 243817 - 243353 - | hypothetical protein RF_0221 245112 - 243817 - | putative oxidoreductase protein TERM 240 245352 - 245338 - H 100 -7.2 -5.53436 | opp_overlap 245344 ATAGAAGATAAAAAA GGATAT GTT ATATCC ATAACTATTGTTTTT TERM 241 245407 - 245433 + H 72 -5.8 -4.48263 | opp_overlap 245414 TACTCTTCTCTCTTA TCATAAACCGGC GTT GCCCGTGTGTGA TTTTAATATTATCTC TERM 242 247008 - 247020 + G 72 -2.7 -5.50723 | TAGCCACACTGATTT TAGAT TAT ATCTG TTTTTATTTTCGTAA RF_0222 245558 - 247486 + | hypothetical protein RF_0223 247570 - 248766 + | hypothetical protein RF_0224 248777 - 249691 + | hypothetical protein RF_0225 250993 - 249707 - | hypothetical protein TERM 243 251110 - 251127 + H 77 -9.9 -2.6342 | overlap 251105 ACAGACTCTGTGTCA TTCCTGC GAAA GCAGGAA TCCATTACTTTAAAG RF_0226 251243 - 252448 + | ATPase RF_0227 253239 - 252508 - | hypothetical protein RF_0228 254149 - 253385 - | hypothetical protein valS 256685 - 254106 - | valyl-tRNA synthetase TERM 244 256780 - 256802 + r 88 -11.4 -3.29973 | opp_overlap 256779 256780, overlap 256773 ATGGATATTTAGAAT TTGTGCAAGT GGT ACTTGCACGA TTAATGACTTTTTAC TERM 245 256802 - 256780 - R 72 -9.2 -2.6356 | opp_overlap 256780 256773, overlap 256779 ATGGATATTTAGAAT TTGTGCAAGT GGT ACTTGCACGA TTAATGACTTTTTAC RF_0230 257744 - 256803 - | transposase ubiA 257835 - 258677 + | prenyltransferase RF_0232 258743 - 259204 + | hypothetical protein proP4 260595 - 259201 - | proline/betaine transporter TERM 246 259827 - 259865 + g 100 -11 -4.26327 | opp_overlap 259836, overlap 259822 259824 AAACCGTAGGTTTTG GCGAAGCAATCTTAGGCA AAA TTCCTGAGATTGCCACGC TTCTTTTAGTCGCTC TERM 247 260620 - 260604 - H 71 -8.1 -3.31144 | overlap 260607 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 248 260657 - 260643 - H 77 -4.3 -5.18357 | opp_overlap 260636 260643 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 249 260643 - 260657 + H 91 -4.3 -6.04419 | opp_overlap 260643, overlap 260636 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT tdk 260929 - 261549 + | thymidylate kinase TERM 250 262792 - 262802 + G 71 -6.8 -3.9941 | opp_overlap 262791, overlap 262793 TATAAGAATAATGAC GGCA AAG TGCC TTTGCTTATGCAAGG TERM 251 262793 - 262807 + G 74 -8.6 -3.30771 | opp_overlap 262791, overlap 262792 262802 ATAAGAATAATGACG GCAAAG TGC CTTTGC TTATGCAAGGTATCA metG 261691 - 263229 + | methionyl-tRNA synthetase TERM 252 263260 - 263286 + F 90 -5.9 -5.54894 | gap 1, overlap 263265 TTCCAATTCCTTCTA TGTCATTCCCGC AAAA GCGGGAATC-CA TTTTTTTAATAAATT TERM 253 263265 - 263282 + F 87 -11.3 -3.00863 | overlap 263260 ATTCCTTCTATGTCA TTCCCGC AAAA GCGGGAA TCCATTTTTTTAATA tatD 263371 - 264243 + | putative deoxyribonuclease, hydrolase RF_0237 264478 - 265485 + | hypothetical protein TERM 254 265495 - 265483 - f 79 -3.5 -5.70522 | opp_overlap 265483, overlap 265492 AACAAGAAGAAAAAA TAAAT ATT ATTTA TATTAAAGCTATTTT RF_0238 265649 - 266926 + | Poly-beta-hydroxyalkanoate depolymerase TERM 255 267043 - 267087 + T 100 -12.2 -4.08216 | gap 1, opp_overlap 267043 267045 267046, overlap 267044 267046 GACAGTTTTTGAAAA GAC-CTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAGTGGG TTTTGCGAGCCATAC TERM 256 267085 - 267043 - T 100 -16.5 -4.09243 | gap 1, opp_overlap 267043 267044 267046, overlap 267045 267046 GACAGTTTTTGAAAA GACCTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAG-TG GGTTTTGCGAGCCAT TERM 257 267044 - 267086 + T 100 -15.7 -3.04715 | gap 1, opp_overlap 267043 267045 267046, overlap 267043 267046 ACAGTTTTTGAAAAG AC-CTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAGTGG GTTTTGCGAGCCATA TERM 258 267084 - 267045 - T 100 -21.6 -3.6422 | opp_overlap 267044 267043 267046, overlap 267043 267046 CAGTTTTTGAAAAGA CCTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAGT GGGTTTTGCGAGCCA TERM 259 267046 - 267083 + T 100 -22.9 -2.74605 | opp_overlap 267046 267045 267043, overlap 267044 267043 AGTTTTTGAAAAGAC CTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAG TGGGTTTTGCGAGCC TERM 260 267083 - 267046 - T 100 -25.1 -2.78211 | opp_overlap 267044 267043 267046, overlap 267045 267043 AGTTTTTGAAAAGAC CTCGATGTCATCCCCGC TTTC GCGGGAATGACATCGAG TGGGTTTTGCGAGCC RF_0239 267482 - 267222 - | hypothetical protein RF_0240 268354 - 267971 - | hypothetical protein manC 269393 - 268356 - | mannose-1-phosphate guanylyltransferase mutM 270287 - 269457 - | formamidopyrimidine-DNA glycosidase TERM 261 270173 - 270199 + g 85 -8.2 -4.71061 | CGGAAGCTAAAAGCG GAGATAGTTTAT AAC GTAAATTATCTC TTTTTAACTCTACAT ubiE 270316 - 271062 + | ubiquinone/menaquinone biosynthesis methyltransferase ubiB 271059 - 272495 + | 2-polyprenylphenol 6-hydroxylase RF_0245 272876 - 273322 + | hypothetical protein TERM 262 273992 - 274008 + G 83 -9.5 -3.88498 | opp_overlap 273989 273992 TTTGTCAGAGAATTA TCTACTC TAG GAGTAGA TTTAATATCTAAAGC TERM 263 274008 - 273992 - g 75 -9.5 -2.88822 | opp_overlap 273992, overlap 273989 TTTGTCAGAGAATTA TCTACTC TAG GAGTAGA TTTAATATCTAAAGC TERM 264 274095 - 274084 - g 81 -2.2 -5.99154 | opp_overlap 274089 TATTAAACAAAAAAA CGAG TCAT CTCA AGGTGTTATATTAAA RF_0246 273434 - 275215 + | hypothetical protein TERM 265 275715 - 275728 + G 71 -8.1 -3.30701 | opp_overlap 275715 GCCGTATTGAATATA CGGAG CTTA CTCCG TTCAATTTAATAGAG TERM 266 275728 - 275715 - g 70 -8.1 -3.10344 | opp_overlap 275715 GCCGTATTGAATATA CGGAG CTTA CTCCG TTCAATTTAATAGAG TERM 267 275922 - 275941 + G 89 -10.8 -3.75766 | AGTTATGGTTGATGC TTGCCCAT AACC ATGGGCAA TTATTAAATTATAGC RF_0247 275336 - 276478 + | ATPase engA 277965 - 276622 - | GTP-binding protein EngA TERM 268 277663 - 277651 - G 80 -7.7 -4.16284 | opp_overlap 277651 ATATTTTCTAACAAA GCTAC CAA GTAGC TTATCATCGGGCAAT TERM 269 277651 - 277663 + g 71 -7.7 -3.40522 | opp_overlap 277651 ATATTTTCTAACAAA GCTAC CAA GTAGC TTATCATCGGGCAAT RF_0249 278381 - 277968 - | hypothetical protein TERM 270 278191 - 278173 - G 80 -6 -4.95843 | opp_overlap 278173 278174 278177, overlap 278174 ACATAAAACATAAAA TTGCCGAT TGT ACCGACAA TCGTCATATATTTTT TERM 271 278174 - 278197 + g 75 -8.2 -3.57901 | opp_overlap 278173 278174, overlap 278173 278177 CATAAAACATAAAAT TGCCGATTGT ACCG ACAATCGTCA TATATTTTTCGTAAA TERM 272 278197 - 278174 - G 73 -8.2 -3.55066 | opp_overlap 278174 278173 278177, overlap 278173 CATAAAACATAAAAT TGCCGATTGT ACCG ACAATCGTCA TATATTTTTCGTAAA TERM 273 278177 - 278194 + g 71 -8.5 -2.90234 | opp_overlap 278173 278174, overlap 278174 278173 AAAACATAAAATTGC CGATTGT ACCG ACAATCG TCATATATTTTTCGT TERM 274 278317 - 278290 - G 87 -11.4 -3.15579 | overlap 278294 GTAAGTTTCGACGAA GCAATCTCAGGA TATT TCATGAGATTGC CGTGCAGCCTACGGC xth2 279167 - 278385 - | exodeoxyribonuclease III RF_0251 280246 - 279164 - | hypothetical protein RF_0252 280735 - 280301 - | hypothetical protein xseA 282245 - 280857 - | exodeoxyribonuclease VII large subunit TERM 275 281342 - 281356 + g 77 -4.4 -5.16237 | TAATTAACCTGCTAG TATTAT TCA ATAATA TTTTTTCATAAGATT TERM 276 282415 - 282430 + H 79 -4.8 -5.27779 | TATTTGATATATTAC TAATAG CTTG CTATTA TTTTTTACTATTAAA TERM 277 283244 - 283260 + G 91 -9.5 -4.36914 | opp_overlap 283242 283253 283256, overlap 283253 AATTTTCAAGGTAGT TACGGTA AAT TACCGTA TTTTCTAAAAAAAGA ostA 282464 - 284605 + | organic solvent tolerance protein TERM 278 284696 - 284685 - f 83 -4.4 -5.61689 | opp_overlap 284685, overlap 284678 AAAAGTAATAAAAAA TGCT ATTT AGCA TTTTTAACTGGATTA TERM 279 285006 - 284992 - g 71 -8.6 -2.94293 | TGCTCAAGATAAGCA GCTAAG TGA CTTAGC AATCAAGAGCTTAAT RF_0255 284807 - 285697 + | hypothetical protein TERM 280 285994 - 285982 - g 74 -6.3 -4.386 | TAACCTTGCAGAAAA TAGCA GAG TGCTA GAAATAGGACCAGGC ksgA 285842 - 286573 + | dimethyladenosine transferase RF_0257 287164 - 286922 - | hypothetical protein TERM 281 287022 - 287010 - G 75 -4.9 -5.0666 | TAGTTAAAAAAGAAA TAACA AAA TGTTA AAAAGCTAGTTAAAA RF_0258 288056 - 287526 - | hypothetical protein RF_0259 288352 - 289113 + | protein phosphatase RF_0260 290131 - 289490 - | TPR repeat-containing protein TERM 282 290060 - 290073 + g 71 -5.3 -4.60041 | AGAATCATATTCAAT TGCTT TATC AAGCA TTTTTAAGGCTAAAT RF_0261 291140 - 291012 - | hypothetical protein cspA 291256 - 291468 + | cold shock-like protein TERM 283 291538 - 291556 + F 79 -4.7 -5.16133 | CCTAGTCATCTTTAT CAAAATA GTAAA TATTTTG TTTTTGTCTTATAAT TERM 284 292228 - 292211 - gf 74 -5.5 -4.80455 | GACTGAAATACAAAA GCAATCG ATTC CGGTTGC AATGACGGGGTCGGA RF_0263 292119 - 292355 + | ATP-dependent RNA helicase RhlE TERM 285 292815 - 292798 - gf 72 -2.8 -5.38054 | TCTGATAAAGAAAAA TTTAGT GAATTA ACTAAA CAACTTGGTAACAGG RF_0264 292303 - 293364 + | ATP-dependent RNA helicase RhlE ampG2 293766 - 294725 + | AmpG protein TERM 286 294758 - 294778 + T 83 -11.2 -2.90723 | GGCTCGGCTCCATCA TCCCGTGA TTTAT TCACGGGA TCTAGTTAAAAATAC TERM 287 294781 - 294817 + T 88 -9.1 -4.28994 | opp_overlap 294791, overlap 294784 294785 294791 TTTATTCACGGGATC TAGTTAAAAATACTAAT ATT ATTAGTATTTTTAGTTG TTTTACTGGATACTG TERM 288 294784 - 294814 + T 100 -10.8 -4.26327 | opp_overlap 294791, overlap 294781 294785 294791 ATTCACGGGATCTAG TTAAAAATACTAAT ATT ATTAGTATTTTTAG TTGTTTTACTGGATA TERM 289 294785 - 294813 + T 89 -12.1 -3.15073 | opp_overlap 294791, overlap 294784 294781 294791 TTCACGGGATCTAGT TAAAAATACTAAT ATT ATTAGTATTTTTA GTTGTTTTACTGGAT TERM 290 294791 - 294807 + T 85 -6.7 -5.07971 | opp_overlap 294791, overlap 294785 294784 294781 GGATCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAGTTGTTTTA TERM 291 294807 - 294791 - T 79 -6.7 -4.67353 | opp_overlap 294785 294784 294781 294791 GGATCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAGTTGTTTTA RF_0266 296111 - 294891 - | ankyrin repeat-containing protein TERM 292 296242 - 296184 - H 76 -5.2 -5.05505 | gap 3, overlap 296185 ACGATAAATTAAAAA GTTGCTATGGTACTGTTAACAAAATAGCT TTAA AATTATTTTGTTAACAGTACCATA-CA-- ACAATCTCCAAGATA TERM 293 296243 - 296185 - H 100 -18.1 -3.61676 | gap 1, overlap 296184 CGATAAATTAAAAAG TTGCTATGGTACTGTTAACAAAATAGCT TTAA AATTATTTTGTTAACAGTACCATA-CAA CAATCTCCAAGATAA RF_0267 296481 - 297053 + | NifU-like domain-containing protein TERM 294 297102 - 297149 + T 71 -8.6 -2.79133 | gap 1, opp_overlap 297139 TTTCTATGTCGTTCC CGCATTCTATGTCATTCCTAGCT AGA AGC-GGGAATGACATAGAAGCCA TGTAATAACAACTTC ecoT 297682 - 297194 - | ecotin precursor RF_0269 298611 - 297700 - | hypothetical protein ftsZ 299978 - 298620 - | cell division protein FtsZ TERM 295 299638 - 299624 - G 70 -7.1 -3.65201 | overlap 299635 299636 CAATACGTGCAATAA CCGGT GCAGA ACCGG TACCTGTACCGCCGC TERM 296 300214 - 300192 - R 80 -7.2 -4.59109 | opp_overlap 300184 300192 300202, overlap 300202 CACACGGTCTAAAAA TTTCCATAAA CTT TTTATGAAAA GTTTAAGATAAGTTT RF_0271 300642 - 300217 - | toxin of toxin-antitoxin system RF_0272 300887 - 300639 - | antitoxin of toxin-antitoxin system Phd TERM 297 300927 - 300905 - R 72 -5.7 -4.46675 | opp_overlap 300905 AGGTAATATAATAAA TAGACTAAT TTAAT ATTAGCCTA TTTCTAAGATTTTAT fumC 302376 - 300991 - | fumarate hydratase TERM 298 302207 - 302217 + g 84 -5.4 -5.44119 | AACTCATAATTAACC TGTG CTG CACA TTTTTTTAAAATAGC RF_0274 302825 - 302373 - | hypothetical protein RF_0275 303658 - 302936 - | tRNA/rRNA methyltransferase TERM 299 304625 - 304662 + G 70 -7.1 -3.68073 | opp_overlap 304636 CTAGAGAGCATATAT TACTAGCAAAACAGGTA GGTG TACCTGCTATGGTAGTA TTCTTAAATAAAGTA TERM 300 304651 - 304636 - g 80 -7.6 -4.32436 | opp_overlap 304625 ATATTACTAGCAAAA CAGGTA GGTG TACCTG CTATGGTAGTATTCT tuf 304264 - 305448 + | elongation factor Tu TERM 301 305456 - 305493 + F 100 -16.1 -4.18401 | opp_overlap 305462, overlap 305462 ATAATTAATTGATTT TATAAATACCTATTATT TTTT AATAATAGGTATTTATA TTTTAAGATGTCTGA TERM 302 305462 - 305487 + F 95 -10.7 -4.45771 | opp_overlap 305462, overlap 305456 AATTGATTTTATAAA TACCTATTATT TTTT AATAATAGGTA TTTATATTTTAAGAT TERM 303 305487 - 305462 - f 89 -10.7 -3.9009 | opp_overlap 305462 305456 AATTGATTTTATAAA TACCTATTATT TTTT AATAATAGGTA TTTATATTTTAAGAT rpsJ 305544 - 305861 + | 30S ribosomal protein S10 rplC 305862 - 306509 + | 50S ribosomal protein L3 TERM 304 306987 - 306971 - g 91 -5.2 -5.71983 | GGAACCACAAAAAAA CCTTTT AAGCA AAAAGG TACAGGTAATGCAAG rplD 306782 - 307405 + | 50S ribosomal protein L4 rplW 307402 - 307698 + | 50S ribosomal protein L23 rplB 307699 - 308520 + | 50S ribosomal protein L2 rpsS 308545 - 308823 + | 30S ribosomal protein S19 TERM 305 308867 - 308852 - g 93 -6.2 -5.52079 | ACAGGAAAATAAAAA TTTTGC TACG GCAAAA GCTAAATCTATTAGA rplV 308832 - 309191 + | 50S ribosomal protein L22 TERM 306 309482 - 309496 + G 74 -7.2 -4.08939 | opp_overlap 309482 309480 CTATCGAGAAAATGA CTTCTT TAA AAGAAG TTTATATAAATATTC rpsC 309193 - 309846 + | 30S ribosomal protein S3 rplP 309861 - 310271 + | 50S ribosomal protein L16 rpmC 310264 - 310479 + | 50S ribosomal protein L29 rpsQ 310466 - 310714 + | 30S ribosomal protein S17 rplN 310789 - 311157 + | 50S ribosomal protein L14 rplX 311158 - 311487 + | 50S ribosomal protein L24 rplE 311487 - 312026 + | 50S ribosomal protein L5 rpsN 312044 - 312349 + | 30S ribosomal protein S14 rpsH 312369 - 312767 + | 30S ribosomal protein S8 rplF 312777 - 313310 + | 50S ribosomal protein L6 TERM 307 313585 - 313575 - g 75 -2.4 -5.66989 | GAAATAGCAAAAAAA GCTG ATT CTGC AGGGATAAAAGAAGT TERM 308 313666 - 313644 - g 91 -10.6 -4.07885 | overlap 313645 CACGGTGTTGTAAAA GCTCTAGCTG ATG CAGCTAGAGA GAAAATAAAATTTTA TERM 309 313665 - 313645 - g 100 -14.1 -3.04517 | overlap 313644 ACGGTGTTGTAAAAG CTCTAGCTG ATG CAGCTAGAG AGAAAATAAAATTTT rplR 313326 - 313682 + | 50S ribosomal protein L18 rpsE 313700 - 314230 + | 30S ribosomal protein S5 rpmD 314223 - 314447 + | 50S ribosomal protein L30 rplO 314461 - 314922 + | 50S ribosomal protein L15 TERM 310 315126 - 315136 + G 70 -4 -4.98531 | CGGAGGATCGCTAGG TAGA ATG TCTA TTTTTGCTTTAGCAA secY 314926 - 316227 + | preprotein translocase subunit SecY adk 316243 - 316881 + | adenylate kinase rpsM 316940 - 317317 + | 30S ribosomal protein S13 rpsK 317342 - 317725 + | 30S ribosomal protein S11 rpoA 317744 - 318766 + | DNA-directed RNA polymerase subunit alpha rplQ 318779 - 319159 + | 50S ribosomal protein L17 TERM 311 319306 - 319296 - g 70 -4 -5.08601 | CTAGTGCAATAAAAA CTTT TAT AAAG AAAGTTGCACATGAA rpsT 319208 - 319480 + | 30S ribosomal protein S20 TERM 312 319869 - 319905 + F 100 -12 -4.82901 | opp_overlap 319868 319871 319879, overlap 319879 ATTGCTAAGACAATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTAATTG TTTTTATGGACCCCG TERM 313 319879 - 319895 + F 70 -3.8 -5.10004 | opp_overlap 319879 319871 319868, overlap 319869 CAATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTAATTGTTTTT TERM 314 319994 - 320022 + F 73 -7.7 -3.75803 | opp_overlap 319994 AGCGGGGATCCAGAA TAAAAAATCTTAA TTT TAAAGATTTTTTA TTATATCGTTTTTTT TERM 315 320062 - 320042 - f 84 -9.9 -3.53091 | opp_overlap 320042 320046, overlap 320046 ATCGTTTTTTTCAAA TAAAGCTTT AAA AAAGCTTTA TTTGACTGGACTCCC TERM 316 320042 - 320062 + F 86 -9.9 -3.65902 | opp_overlap 320042 320046, overlap 320046 ATCGTTTTTTTCAAA TAAAGCTTT AAA AAAGCTTTA TTTGACTGGACTCCC TERM 317 320046 - 320058 + F 74 -6.3 -4.46112 | opp_overlap 320046 320042, overlap 320042 TTTTTTTCAAATAAA GCTTT AAA AAAGC TTTATTTGACTGGAC TERM 318 320058 - 320046 - f 74 -6.3 -4.41348 | opp_overlap 320042 320046, overlap 320042 TTTTTTTCAAATAAA GCTTT AAA AAAGC TTTATTTGACTGGAC spoT5 320871 - 321293 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0306 322111 - 321311 - | transposase/IS protein TERM 319 321652 - 321665 + g 73 -8.1 -3.53761 | TTTTGAATATGGAGT CCAGG TTTC CCTGG TTTAGCCCAGCATTA RF_0307 322551 - 322108 - | transposase RF_0308 323137 - 322526 - | transposase RF_0309 323763 - 325040 + | MFS type sugar transporter TERM 320 325298 - 325275 - T 71 -8.3 -3.29837 | overlap 325273 CGGTAAATATTAATA CCTTTTTAG AAAGTG CTAAAAAGG AATGGAAAAAATTAG TERM 321 325421 - 325402 - T 79 -8.6 -3.92005 | opp_overlap 325401 325404, overlap 325405 ATATAGAAATTGAAA CAACTAGG AACG CCTAGCTG AATTTAATAACTCCT TERM 322 325418 - 325405 - T 71 -6.7 -4.06633 | opp_overlap 325404 325401, overlap 325402 TAGAAATTGAAACAA CTAGG AACG CCTAG CTGAATTTAATAACT RF_0310 327525 - 325405 - | TPR repeat-containing protein TERM 323 327483 - 327493 + g 70 -4 -5.06585 | CAAGACATAATAAGG CTTT GTC AAAG TTTTTATCTAGTTTG RF_0311 327859 - 328122 + | hypothetical protein RF_0312 328129 - 328413 + | hypothetical protein RF_0313 328733 - 328455 - | hypothetical protein TERM 324 329078 - 329088 + r 79 -8.2 -4.13728 | GCTAAATCATAATTG CCGG CTA CCGG TTTTGGCAATATATC TERM 325 329227 - 329213 - R 100 -10 -4.88405 | opp_overlap 329211 AATTTTTAAAGAAAA GGGACA ATT TGTCCC TATAAGTTGTAGAAA RF_0314 330196 - 329513 - | ankyrin repeat-containing protein TERM 326 330168 - 330198 + g 77 -8.5 -3.58133 | opp_overlap 330168 330170 TTTACTGGGAACATA GAGTGCTTATA TTTATTTTT TATAAGCACTC TTATATACTAATTAT TERM 327 330198 - 330168 - G 72 -8.5 -3.07895 | opp_overlap 330168, overlap 330170 TTTACTGGGAACATA GAGTGCTTATA TTTATTTTT TATAAGCACTC TTATATACTAATTAT TERM 328 330463 - 330479 + H 76 -8.7 -3.53444 | AGGTATGGGGTGGGG CGTTACC CAC GGTAGCG TTTCGCAGGAAGTAC RF_0315 330585 - 330965 + | hypothetical protein TERM 329 331369 - 331381 + F 77 -4.1 -5.44119 | AAAACCTATTGTGAA CTGTT GGT AACGG TTTTTTTGAACTCCC RF_0316 331551 - 331808 + | hypothetical protein TERM 330 332168 - 332184 + F 78 -6.7 -4.45083 | GGTTCTGTGAACATT TCTAAAA AGC TTTTAGA TTTTATAAATGTAAC TERM 331 332230 - 332220 - f 71 -5.4 -4.66163 | ATGCGTATGGAAAAA GGTA TAG TACC GGACAATTTTCGTTT TERM 332 333065 - 333055 - f 75 -2.6 -5.68438 | TTATTAAAGAAAAAA TATT ATG AATA AAAATTTGAAACGTC RF_0317 333059 - 333709 + | hypothetical protein RF_0318 333654 - 334712 + | hypothetical protein TERM 333 334971 - 334958 - f 75 -8.1 -3.67175 | overlap 334945 AGGCTTGAAAATGAA GCTGC GGAA GCAGC AATTGCTGAAGCTAT TERM 334 335682 - 335672 - g 70 -4 -5.1101 | GTAGCAGCCAAAAAA CATA ATT TATG GAGCAGTGTTTTAGG sca11 335000 - 336001 + | cell surface antigen-like protein Sca11 RF_0320 336125 - 337078 + | transposase TERM 335 337336 - 337324 - g 72 -3.3 -5.20216 | overlap 337313 TACATGACCAAAAAA TGGTC CAT GTCCA TACCAAATTGGAACA RF_0321 337153 - 337395 + | transposase RF_0322 337867 - 339015 + | transporter RF_0323 339315 - 339500 + | hypothetical protein def 339942 - 340469 + | peptide deformylase TERM 336 340799 - 340827 + G 75 -9.5 -2.80074 | opp_overlap 340808 CCATCCGATTTGCCT CGTCACAGAGGAG CGG CTCCTCTGCAGCG TACTATTATAGAGGG fmt 340466 - 341377 + | methionyl-tRNA formyltransferase TERM 337 344569 - 344585 + F 79 -10.1 -2.8806 | opp_overlap 344563 GCTAATAATGTTATA CCGTGGT CCC GCCACGG TATCTAGAAAAATTT RF_0326 346352 - 346606 + | hypothetical protein RF_0327 346617 - 346991 + | hypothetical protein n2B 348407 - 347355 - | putative ATPase n2B TERM 338 348335 - 348368 + g 80 -7.6 -4.2535 | overlap 348329 TATTAAGTTCTGCTG CAAGCTGTTTTAAT TCTTCT AGTAAAGCAGCTTG TTTTGAATCTAGTAT RF_0329 349108 - 348404 - | nucleotidyltransferase domain-containing protein queA 350208 - 349105 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 339 349144 - 349161 + g 72 -5.7 -4.43221 | TGCATCGCCATAGCT GAAAAAA CGCA TTTTTTC TTTTATAGCATATTT abcT3 352350 - 350581 - | multidrug ABC transporter ATP-binding protein TERM 340 351212 - 351185 - G 72 -4.9 -4.85545 | overlap 351186 AGCAAACTAATAAAA GTGGTTTTCCC TGAACC GGAAAAACCAA CTAGTCCCACTTTTT TERM 341 351211 - 351186 - G 73 -8.4 -3.497 | overlap 351185 GCAAACTAATAAAAG TGGTTTTCCC TGAACC GGAAAAACCA ACTAGTCCCACTTTT TERM 342 351850 - 351840 - G 74 -5.4 -4.74132 | ATATCGTAGCAAAAA CGTA ATG TACG GAATATAAAGCAATT RF_0332 352534 - 352806 + | hypothetical protein TERM 343 352864 - 352876 + F 80 -10.5 -2.78816 | TTTCGTCATTGCAAG CGGGC ATT GCCCG TGTGATACCAAATCG TERM 344 352895 - 352922 + F 73 -9.2 -2.81464 | gap 1, opp_overlap 352890, overlap 352919 GATACCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAATAATAA TERM 345 352919 - 352954 + F 77 -9.2 -3.18429 | opp_overlap 352890, overlap 352895 352923 GCCGTAGGCTGCGTG GCAATCTCATGAAT AATAAGAA ATTCCTGAGATTGC TTCGTCAAAATTTTC cydA 353016 - 354386 + | cytochrome d ubiquinol oxidase subunit I RF_0334 354664 - 354395 - | hypothetical protein relB1 354928 - 354668 - | DNA-damage-inducible protein J cydB 355088 - 356107 + | cytochrome d ubiquinol oxidase subunit II TERM 346 356885 - 356869 - g 100 -8.1 -5.55769 | TTGTATAATAAAAAA TTTGCAA GTT TTGCAAA TACCGTAAATAGTAC lgtF 356452 - 357303 + | Beta 1,4 glucosyltransferase mpp 357382 - 358620 + | Zn-dependent peptidase TERM 347 359478 - 359492 + G 71 -8.6 -2.90496 | opp_overlap 359478 359465, overlap 359475 AGCTTTTGAATCATA TCAGCT AAT AGCTGA TCGTTTAAAAGAAAA TERM 348 359492 - 359478 - g 71 -8.6 -2.90194 | opp_overlap 359475 359478, overlap 359465 AGCTTTTGAATCATA TCAGCT AAT AGCTGA TCGTTTAAAAGAAAA purC 358801 - 359511 + | phosphoribosylaminoimidazole-succinocarboxamide synthase RF_0340 359753 - 361354 + | hypothetical protein RF_0341 362054 - 361731 - | integrase-like protein RF_0342 362753 - 363364 + | transposase RF_0343 363339 - 363782 + | transposase TERM 349 364238 - 364225 - g 73 -8.1 -3.53761 | TAATGCTGGGCTAAA CCAGG GAAA CCTGG ACTCCATATTCAAAA RF_0344 363779 - 364579 + | transposase/IS protein RF_0345 364624 - 365790 + | hypothetical protein TERM 350 365840 - 365816 - f 100 -13.1 -2.77182 | opp_overlap 365816, overlap 365813 365822 TTTTATACTCAACTA GGATAAGATTT TTT AAATCTTATCC TTTCTCGCTTTATTT TERM 351 365816 - 365840 + F 100 -13.1 -4.0683 | opp_overlap 365816 365813 365822 TTTTATACTCAACTA GGATAAGATTT TTT AAATCTTATCC TTTCTCGCTTTATTT RF_0346 365976 - 367403 + | hypothetical protein TERM 352 367550 - 367536 - T 91 -4.3 -6.04419 | opp_overlap 367536, overlap 367528 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 353 367536 - 367550 + T 77 -4.3 -5.18357 | opp_overlap 367536 367528 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 354 367573 - 367589 + T 73 -8.1 -3.44051 | overlap 367576 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGTAATGACGG TERM 355 367700 - 367643 - T 74 -9.4 -2.77895 | gap 1, opp_overlap 367648, overlap 367642 367645 367661 CCCACTCGCAATAAC GATTTTTGAGCCATGCAACAAAGCC GCGACTAAA GGCTTTGTTGCATGGATCAATT-TC GCTTCTGTCCATCCC TERM 356 367699 - 367645 - T 71 -8.7 -2.93549 | opp_overlap 367648, overlap 367642 367643 367661 CACTCGCAATAACGA TTTTTGAGCCATGCAACAAAGCC GCGACTAAA GGCTTTGTTGCATGGATCAATTT CGCTTCTGTCCATCC TERM 357 367648 - 367696 + T 100 -19.2 -3.83323 | opp_overlap 367645 367642 367643 367661 TCGCAATAACGATTT TTGAGCCATGCAACAAAGCC GCGACTAAA GGCTTTGTTGCATGGATCAA TTTCGCTTCTGTCCA rnpA 368255 - 367899 - | ribonuclease P rpmH 368409 - 368275 - | 50S ribosomal protein L34 rplT 368915 - 368562 - | 50S ribosomal protein L20 rpmI 369142 - 368936 - | 50S ribosomal protein L35 TERM 358 369441 - 369458 + G 70 -4.1 -5.10208 | overlap 369443 AAGGTGAGGGTATTT TTGTAGG TTGC CCTGCGA TTTTTATTAGGCTTG nrdG 369344 - 370021 + | organic radical activating protein TERM 359 370155 - 370119 - f 80 -7.6 -4.2828 | opp_overlap 370129, overlap 370129 CGGTATCCAGTAAAA CAACCAAAAATACTAA AATTA TTAGTATTTTTAACTG GATCCCGTGAATAAA TERM 360 370145 - 370129 - f 70 -3.8 -5.07971 | opp_overlap 370129, overlap 370119 TAAAACAACCAAAAA TACTAA AATTA TTAGTA TTTTTAACTGGATCC TERM 361 370262 - 370237 - f 74 -9.3 -3.17319 | opp_overlap 370237 370241 370256, overlap 370235 GGGAATCTAGTAAGA CATATAAAAAA TTTA TTTTTTATATG TTTGTTTTATCAAAT TERM 362 370237 - 370262 + F 93 -9.3 -4.77775 | opp_overlap 370237 370235, overlap 370241 370256 GGGAATCTAGTAAGA CATATAAAAAA TTTA TTTTTTATATG TTTGTTTTATCAAAT TERM 363 370241 - 370251 + F 72 -2.6 -5.51046 | opp_overlap 370237 370235, overlap 370237 ATCTAGTAAGACATA TAAA AAA TTTA TTTTTTATATGTTTG TERM 364 370487 - 370464 - g 79 -8.8 -3.76839 | GAACTTGAAGCGAAA TCCCGCACGG AATT CGGTACGGGA GCGTCAAGAGCATTA rplY 370434 - 371045 + | 50S ribosomal protein L25/general stress protein Ctc pth 371329 - 371886 + | peptidyl-tRNA hydrolase RF_0354 372019 - 372447 + | acetyltransferase TERM 365 372464 - 372494 + G 77 -7.6 -4.02571 | overlap 372465 ACTAAAACTAGGAAT TGTTGGGTTGCCGA ATG TCGGTAAGTCAACG TTATTTAATGCCTTA TERM 366 372465 - 372493 + G 74 -8.9 -3.0082 | overlap 372464 CTAAAACTAGGAATT GTTGGGTTGCCGA ATG TCGGTAAGTCAAC GTTATTTAATGCCTT TERM 367 373340 - 373365 + G 80 -10.5 -2.66249 | gap 1, opp_overlap 373340, overlap 373339 373337 373363 373364 TTGGACTTTTAAAGA CGGCA-CGCTTG CAC CAAGTGCTGCCG GTATTATTCATACCG TERM 368 373365 - 373340 - g 71 -8.3 -3.36515 | gap 1, opp_overlap 373340 373339 373337 373363 373364 TTGGACTTTTAAAGA CGGCA-CGCTTG CAC CAAGTGCTGCCG GTATTATTCATACCG ychF 372444 - 373541 + | translation-associated GTPase RF_0356 373713 - 373967 + | hypothetical protein RF_0357 374148 - 374489 + | hypothetical protein TERM 369 374672 - 374656 - f 71 -8.1 -3.31144 | overlap 374659 TCGTTATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 370 374708 - 374694 - f 70 -4.3 -4.77157 | opp_overlap 374694 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 371 374694 - 374708 + F 91 -4.3 -6.04419 | opp_overlap 374694 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 372 374864 - 374854 - f 70 -4 -5.05079 | AGAATGACATAAAAA TGTA GTT TACA ACACTTATGAAAATA TERM 373 374895 - 374912 + G 74 -6.3 -4.48317 | ATCGCTAAAATCCCG GCATGGA TGCT TCTATGC TTATTTATTTTATCA TERM 374 375556 - 375570 + G 72 -3.6 -5.1356 | overlap 375565 ATTATGGTTTTTTCA TAGAAG CTC CTTTTA TTTTTATTGATAAAA bcr1 374871 - 376088 + | bicyclomycin resistance protein RF_0359 376272 - 377855 + | site-specific recombinase pat1 379613 - 377964 - | patatin-like phospholipase RF_0361 379803 - 380123 + | hypothetical protein RF_0362 380508 - 381962 + | hypothetical protein RF_0363 382596 - 381949 - | hypothetical protein TERM 375 382303 - 382291 - G 74 -7.7 -3.92075 | opp_overlap 382290 382291 AGCGTCATTCACAAA GCTTG ATA CAAGC AAATTTTTTGAGTCA TERM 376 382574 - 382591 + g 77 -9.9 -2.57244 | overlap 382569 TTGCTGTTTATGTCA TTCCTGC AAAA GCAGGAA TCCATTAGTCAATAA dnaA 384074 - 382683 - | chromosomal replication initiation protein TERM 377 383307 - 383291 - G 72 -5.9 -4.35885 | opp_overlap 383291 ACCTATCACAAGAAA TAACCAT TTG ACGGTTA TTATCAATCAATGTA pspE 384446 - 384075 - | rhodanese-related sulfurtransferase TERM 378 384722 - 384708 - g 76 -3.6 -5.41941 | overlap 384709 TAAATTAAATAAAAA CTCTTT ACA AAAGAA ACTTTTTTACCGTAG RF_0366 384688 - 384951 + | hypothetical protein TERM 379 385953 - 385940 - g 79 -2.5 -5.89921 | opp_overlap 385940 ACTAGAACAAAAAAA TAATA TATT TATTA GTTATGAAAATTCTG TERM 380 386866 - 386883 + G 80 -7.1 -4.57353 | TACCTCAAGTAGCTG TAGTTGT ACCG ACAACTA TTTTATGTAGTCAAC mfd 384963 - 388391 + | transcription-repair coupling factor TERM 381 388841 - 388827 - g 77 -4.2 -5.42259 | opp_overlap 388827, overlap 388828 TTACTTGGAAAAAAA GCCG CATCTAT CGGC ACGATAGGTGTAGAG murE 388467 - 390059 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase murF 390179 - 391528 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase mraY 391722 - 392807 + | phospho-N-acetylmuramoyl-pentapeptide-transferase rickA 393024 - 394613 + | Actin polymerization protein RickA RF_0372 395455 - 394865 - | tryptophan repressor binding protein TERM 382 395480 - 395507 + r 73 -9.2 -2.80113 | gap 1 ACAACTAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTGATGAAATAATA scoB 396247 - 395612 - | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B scoA 396949 - 396251 - | succinyl-CoA:3-ketoacid-coenzyme A transferase TERM 383 396418 - 396438 + g 72 -4.7 -4.79352 | CGGCACCTGCCATGG CTGCATTAA AAT TTCGTGCAG TTTTATTGTAAATCA RF_0375 397107 - 397949 + | hypothetical protein TERM 384 397954 - 397968 + F 70 -4.3 -4.92757 | ATATGGTTTAGAGCG TGGTT TAGTT AACCA TTTTGTTGTTGATAA RF_0376 398123 - 398311 + | hypothetical protein TERM 385 398395 - 398423 + T 85 -11.1 -3.24 | overlap 398399 AACGTAGGGAGCGTG GCAATCTCAGG AGTTTTG CCTGAGGTTGC TTCGTCAATTACTTT RF_0377 399109 - 398471 - | hypothetical protein TERM 386 399227 - 399237 + G 72 -2.6 -5.34309 | TGTATATGCTCTCTA TTTT AGA AAAA TTTTTATTTGCTCCT TERM 387 399901 - 399872 - g 95 -8.6 -5.055 | gap 1, overlap 399876 GGAATCCGGAAAAAA TG-GATCCCGCGG TCTGG CCGCGGGATGACA CCGTGGCTGCCAAAA TERM 388 399896 - 399876 - g 100 -14 -2.92111 | overlap 399872 TCCGGAAAAAATGGA TCCCGCGG TCTGG CCGCGGGA TGACACCGTGGCTGC TERM 389 400006 - 399994 - g 70 -6.3 -4.17316 | overlap 400001 ATTGCCGGAAAACAA GGTAA TAT TTACC CTAAAGCTGCCGGCA recG 399211 - 401334 + | ATP-dependent DNA helicase RecG TERM 390 401447 - 401433 - f 91 -4.3 -6.04419 | opp_overlap 401433, overlap 401425 AAAATAATAAAAAAA TTCTG ATTTA CAGAA TTTTTTACTGGATTG TERM 391 401433 - 401447 + F 77 -4.3 -5.18357 | opp_overlap 401433 401425 AAAATAATAAAAAAA TTCTG ATTTA CAGAA TTTTTTACTGGATTG TERM 392 401528 - 401507 - f 75 -5.1 -5.04175 | gap 1, opp_overlap 401511, overlap 401508 401511 401520 GCAATGACAGAAAAA CCGAGCCATG CAA CAAGGCT-GG CTTGACCACGATATC TERM 393 402548 - 402567 + F 72 -5.8 -4.37886 | gap 1, opp_overlap 402547 CATAATGAAAATATG CCGG-TATT TTT AATAACCGG TTTTATAAAAAGTAA RF_0379 402914 - 403759 + | transposase spoT6 403887 - 404390 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein TERM 394 405105 - 405084 - g 73 -7.5 -3.6445 | ACAACAATTCGGAAA TATATTTAG AAAA CTAAATATA AAAGCAAGCCTAAGC TERM 395 407775 - 407757 - g 72 -6 -4.44355 | overlap 407754 407760 CAATGCTAAAAATAA TAGTGGTG AAA CACCATTA CACTATGCTGTTATA spoT13 404476 - 408015 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0382 408615 - 408980 + | transposase RF_0383 409021 - 409488 + | transposase spoT15 409542 - 410249 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0385 410706 - 410278 - | hypothetical protein RF_0386 411367 - 410918 - | hypothetical protein RF_0387 412245 - 412009 - | transposase RF_0388 413124 - 412324 - | transposase/IS protein TERM 396 412665 - 412678 + g 73 -8.1 -3.53761 | TTTTGAATATGGAGT CCAGG TTTC CCTGG TTTAGCCCAGCATTA RF_0389 413564 - 413121 - | transposase RF_0390 414150 - 413539 - | transposase proP 415761 - 414568 - | major facilitator superfamily permease RF_0392 415778 - 416731 + | transposase TERM 397 416989 - 416977 - g 72 -3.3 -5.20216 | overlap 416966 TACATGACCAAAAAA TGGTC CAT GTCCA TACCAAATTGGAACA RF_0393 416806 - 417048 + | transposase RF_0394 417208 - 417071 - | major facilitator transporter TERM 398 417142 - 417131 - G 71 -3 -5.19916 | opp_overlap 417131 AAAATACTCAAAAAA TGTT CCAA AACA TATTAATCCTATTGC TERM 399 417203 - 417248 + g 74 -6.5 -4.53303 | opp_overlap 417211, overlap 417205 417208 TTCTTTCTCATAGCC GAGCATAATTTCTTTACAA AAGTTAAA TTGTAAAGAAATTATACTG TTTTATATAAAAGTC TERM 400 417205 - 417246 + g 81 -9.1 -3.87627 | opp_overlap 417211, overlap 417203 417208 CTTTCTCATAGCCGA GCATAATTTCTTTACAA AAGTTAAA TTGTAAAGAAATTATAC TGTTTTATATAAAAG TERM 401 417208 - 417243 + r 76 -9.4 -3.00574 | opp_overlap 417211, overlap 417205 417203 TCTCATAGCCGAGCA TAATTTCTTTACAA AAGTTAAA TTGTAAAGAAATTA TACTGTTTTATATAA RF_0395 418850 - 417504 - | hypothetical protein TERM 402 419033 - 419072 + H 100 -12.7 -3.23899 | opp_overlap 419038 419040 419043, overlap 419028 419043 CTGTTTTAGGGTGCA TTATAGATAATTATTAA AATTTG TTAATAATTATCTATAA TTAAATTACTTAAAA RF_0396 419230 - 419463 + | hypothetical protein TERM 403 419464 - 419518 + T 89 -10.6 -3.84514 | gap 1, opp_overlap 419455 419464 419470 419481, overlap 419455 419474 419481 AAATTATATAACTAA TTATAATTGA-TATAAAAGGTGAAA GCCGCA TTTCGCCTTTTATATTCAATAATAA TTTCCTGCTTCAACT TERM 404 419518 - 419464 - T 73 -8.4 -3.5275 | gap 1, opp_overlap 419455 419464 419474 419481, overlap 419455 419470 419481 AAATTATATAACTAA TTATAATTGA-TATAAAAGGTGAAA GCCGCA TTTCGCCTTTTATATTCAATAATAA TTTCCTGCTTCAACT TERM 405 419512 - 419470 - T 70 -7.4 -3.57798 | gap 1, opp_overlap 419464 419474 419481, overlap 419464 419481 TATAACTAATTATAA TTGA-TATAAAAGGTGAAA GCCGCA TTTCGCCTTTTATATTCAA TAATAATTTCCTGCT TERM 406 419474 - 419507 + T 83 -10.6 -3.12402 | opp_overlap 419470 419464 419481, overlap 419464 419481 ACTAATTATAATTGA TATAAAAGGTGAAA GCCGCA TTTCGCCTTTTATA TTCAATAATAATTTC RF_0397 420339 - 419509 - | MFS type sugar transporter TERM 407 419931 - 419896 - G 80 -9.2 -3.74693 | TTTTAGTGGATGAAA TTTATAGCATAAACAC GTAA GTGCTAATGCTACAAA AAATTCTACTATAGA TERM 408 419947 - 419935 - G 79 -4.9 -5.27923 | opp_overlap 419935 TAATGCTACAAAAAA TTCTA CTA TAGAA ATAGTGAAATTTTGA RF_0398 420532 - 420329 - | MFS type sugar transporter RF_0399 420823 - 420584 - | MFS type sugar transporter RF_0400 421557 - 420889 - | hypothetical protein TERM 409 421719 - 421695 - R 70 -4.4 -4.79683 | opp_overlap 421695 AATTCATAAAATAAA CCTAAAAAAA CAAGT TTTTTATAGG TTTGACTGGATTCCC perM 422846 - 421791 - | permease PerM-like protein TERM 410 422655 - 422692 + g 79 -7.4 -4.44277 | gap 1, opp_overlap 422655 AAATATGCTCAAAAA TATCAGATAAATTATGC TTGAT GCA-AATTTATTTGATA TTTTAAATTTTGATG TERM 411 422692 - 422655 - G 71 -5.2 -4.62904 | gap 1, opp_overlap 422655 AAATATGCTCAAAAA TATCAGATAAATTATGC TTGAT GCA-AATTTATTTGATA TTTTAAATTTTGATG grpE 423397 - 422858 - | GrpE protein TERM 412 423504 - 423546 + H 75 -8 -3.65425 | opp_overlap 423513 GCGGCGTCACTTTTC GCTTATAATCCTCA-CGTAG TATAC CTACGCTGCGG-TTATAAGC TTTAAAGTGTCTGGC rph 423624 - 424343 + | ribonuclease PH TERM 413 424422 - 424449 + T 73 -9.2 -2.80113 | gap 1, overlap 424446 GACACCACCCCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA RF_0404 424807 - 424532 - | hypothetical protein RF_0405 424949 - 425257 + | hypothetical protein TERM 414 425370 - 425394 + G 74 -8.7 -3.36515 | overlap 425369 AACATAAGCACGGAT GCTTCTATTTA CTA TAAATTGAAGC TATTTGAAGATAAAG RF_0406 425322 - 425858 + | hypothetical protein TERM 415 426462 - 426487 + G 100 -10.7 -4.77173 | opp_overlap 426462 GGGAATCCAGTCAAA CCTATAAAAAA CAAG TTTTTTATAGG TTTATTTTATCAAGA TERM 416 426487 - 426462 - g 87 -10.7 -3.68619 | opp_overlap 426462 GGGAATCCAGTCAAA CCTATAAAAAA CAAG TTTTTTATAGG TTTATTTTATCAAGA RF_0407 425843 - 427777 + | glycosyltransferase groES 427906 - 428193 + | co-chaperonin GroES TERM 417 428494 - 428460 - g 72 -5.8 -4.37886 | gap 1, overlap 428448 428445 TCAGCTGCTACAAAA GCTGCAGAAGTAGCC GGTGAT GG-TACTACTACAGC TACGGTACTTGCTAG TERM 418 429225 - 429206 - g 72 -5 -4.88405 | AATTTCTAAAGAAAA TACCGTAA TTGT TGACGGTA ACGGTGATAAGAAAA TERM 419 429510 - 429493 - g 72 -7.1 -3.86897 | TTCACGCTTCACAAA CTTTAAG AAAT CTTAAAG TAGATAACAAGGATC groEL 428223 - 429866 + | chaperonin GroEL TERM 420 430123 - 430137 + F 83 -4.3 -5.69023 | opp_overlap 430123 CAAACCAGTTAAAAA TTCTG TGAAT CAGAA TTTTTTTAATCTTTT TERM 421 430272 - 430302 + F 70 -6.4 -4.26327 | opp_overlap 430279 430281, overlap 430269 430273 430279 GACCACAGGGTCTAG TTAAAAACACTAAT AAT ATTAGTATTTTTAG TTGTTTTACTGGGTA TERM 422 430659 - 430681 + F 72 -2.8 -5.44119 | AAAGCTCATTAAATT CTTTTTAATT ACA AATTATAAGG TTTTTTTAAAATAAG TERM 423 431043 - 431033 - f 81 -4 -5.61824 | TAAAACTTAAAAAAA TTAG GTT CTAA AAGATAAAAATAATA spoT12 431261 - 431665 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0411 431595 - 432923 + | chitinase TERM 424 433021 - 432992 - T 85 -8.1 -4.37092 | ACGGTGTCCAGAAAA CAACTAAAAATAC ATTA GTATTTTTAACTG GATTCCGTGAATAAA RF_0412 433627 - 433091 - | hypothetical protein TERM 425 433523 - 433541 + g 91 -9.6 -4.53765 | TCCGTACTTTTTTGG TGCTGATG AAG CATCGGCA TTTTCTACTCTGTAT gltX 435015 - 433624 - | glutamyl-tRNA synthetase TERM 426 434990 - 434974 - G 93 -10.1 -4.71061 | ACCTATATGTAAAAA CCCCGTC GGT GACGGAG CAAATCTAGTGATTA TERM 427 435316 - 435301 - R 80 -10.4 -2.64872 | overlap 435300 435298 GCCATGCAACAAGAC CGCAGC CATG GCTGCG TGGCAATCTCAGGAT ubiG 436089 - 435355 - | 3-demethylubiquinone-9 3-methyltransferase TERM 428 436038 - 436056 + g 73 -4.6 -5.05301 | opp_overlap 436037 436040, overlap 436040 436041 CCTTATTCCACCAAT TATGAGAA ATT TTCTCAAA TTTTTCTAATTCTTT TERM 429 436115 - 436133 + H 89 -11.7 -3.19513 | TCTTTCCAATGTCAT CCCGTGG CTTGA CCACGGG TTCCATTAAAGTTCT TERM 430 436185 - 436167 - H 89 -11.7 -3.07816 | GCTGTATTTATGGAA CCCGTGG TCAAG CCACGGG ATGACAAGAGGCCAT znuB 436227 - 436988 + | Zinc/manganese ABC transporter permease protein RF_0416 436985 - 437320 + | hypothetical protein TERM 431 437432 - 437404 - T 74 -9 -3.14683 | opp_overlap 437399, overlap 437408 ATAGGGGTCGACGAA GCAATCTCAG GCAAGATTT CTGAGATTGC CACGCTCCTTCCAGT aas 440884 - 437462 - | acylglycerophosphoethanolamine acyltransferase TERM 432 439095 - 439079 - G 70 -8.1 -3.11812 | ATCCATATTAGCGAA TTTTACC GGC GGTAAAA CGGTTATAGTAATTT TERM 433 439202 - 439192 - G 74 -6.8 -4.28254 | opp_overlap 439191 TTCTAACAGGTAAAA CGGT AGC ACCG GCTTTATCGGCAATC TERM 434 440428 - 440444 + g 70 -8 -3.06302 | opp_overlap 440425 TACCGATAAAAGTTC CGGCTT CAACA AAGCCG TTAGCTCCAAGTAGT pccB 441542 - 443086 + | propionyl-CoA carboxylase beta chain precursor TERM 435 444184 - 444172 - g 75 -4.8 -4.97666 | AAGAGATGATAAAAA TCGC AGCCG GCGA GAAATTATCATTTAC TERM 436 444619 - 444630 + G 81 -4.4 -5.4433 | TAACTACCGTATTTT TAGC AACG GCTA TTTTTATTTATATAT accC 443217 - 445214 + | Acetyl-CoA carboxylase, biotin carboxylase RF_0420 445453 - 445328 - | hypothetical protein RF_0421 446104 - 445577 - | hypothetical protein TERM 437 446027 - 446044 + g 76 -7.1 -4.30253 | ACTTTTATCTATTTT GCTATAA GCTT TTATAGC TTCTTTATATTTCTC TERM 438 446191 - 446143 - R 100 -10.7 -5.24129 | opp_overlap 446144 446146 446148 446150, overlap 446144 TTTTTTTATAAAAAA GTATATATTACCATGAAATATAA TTC CCATGTTTCATGGTAATATATAT ATCTAATAAATGTGC TERM 439 446144 - 446190 + r 100 -15 -2.95774 | opp_overlap 446143 446144, overlap 446146 446148 446150 TTTTTTATAAAAAAG TATATATTACCATGAAATAT AATTCCC ATGTTTCATGGTAATATATA TATCTAATAAATGTG TERM 440 446190 - 446144 - R 100 -14.2 -3.73995 | opp_overlap 446144 446146 446148 446150, overlap 446143 TTTTTTATAAAAAAG TATATATTACCATGAAATATAA TTC CCATGTTTCATGGTAATATATA TATCTAATAAATGTG TERM 441 446146 - 446188 + r 100 -13.2 -3.02947 | opp_overlap 446144 446143, overlap 446144 446148 446150 TTTTATAAAAAAGTA TATATTACCATGAAATAT AATTCCC ATGTTTCATGGTAATATA TATATCTAATAAATG TERM 442 446148 - 446186 + r 87 -11.4 -3.0682 | opp_overlap 446144 446143, overlap 446146 446144 446150 TTATAAAAAAGTATA TATTACCATGAAATAT AATTCCC ATGTTTCATGGTAATA TATATATCTAATAAA TERM 443 446150 - 446184 + r 76 -9.6 -3.08912 | opp_overlap 446144 446143, overlap 446148 446146 446144 ATAAAAAAGTATATA TTACCATGAAATAT AATTCCC ATGTTTCATGGTAA TATATATATCTAATA TERM 444 446296 - 446260 - R 100 -10.5 -4.92314 | opp_overlap 446270, overlap 446263 AGTAATCCAGAAAAA CACCTAAAAATACTAAT TTT ATTAGTATTTTTAACTG GATTCTGTGAATAAA TERM 445 446293 - 446263 - R 84 -10.8 -3.03589 | opp_overlap 446270, overlap 446260 AATCCAGAAAAACAC CTAAAAATACTAAT TTT ATTAGTATTTTTAA CTGGATTCTGTGAAT TERM 446 446270 - 446286 + r 79 -6.7 -4.68424 | opp_overlap 446263 446260 AAAAACACCTAAAAA TACTAAT TTT ATTAGTA TTTTTAACTGGATTC TERM 447 446536 - 446550 + r 77 -4.3 -5.18357 | opp_overlap 446528 446536 AAATAATTAAAAAAA TTCTG ATTTA CAGAA TTTTTTACTGGATTG TERM 448 446550 - 446536 - R 87 -4.3 -5.73672 | opp_overlap 446536, overlap 446528 AAATAATTAAAAAAA TTCTG ATTTA CAGAA TTTTTTACTGGATTG RF_0422 447890 - 446652 - | hypothetical protein TERM 449 447537 - 447582 + g 100 -18.1 -3.52102 | overlap 447538 CTTAATATCTTGTAT GCTTCTATGTTTTTCTATTAA AAAT TTAATAGAAAAACATAGAAGG TTATCTGAATAAAAT TERM 450 447538 - 447581 + g 100 -21.6 -2.7094 | overlap 447537 TTAATATCTTGTATG CTTCTATGTTTTTCTATTAA AAAT TTAATAGAAAAACATAGAAG GTTATCTGAATAAAA TERM 451 447628 - 447659 + g 74 -5.5 -4.84311 | gap 1 TTGATTTCTTTTATA TCT-TTGTTTTTTT CTATT AAAAAAACAAGAGA TTTTATTGTATCAGC ileS 451258 - 447974 - | isoleucyl-tRNA synthetase TERM 452 448773 - 448801 + g 84 -11.1 -3.15579 | opp_overlap 448744 448766 448765, overlap 448749 448777 ACTGAAAGTGCCGTG GCAATCTCATGAG AAT TTCCTGAGATTGC TTCGTCAAGACTTAA RF_0424 451474 - 451746 + | excinuclease ABC subunit C RF_0425 452686 - 452057 - | hypothetical protein rpsU 452748 - 452948 + | 30S ribosomal protein S21 TERM 453 452980 - 453003 + F 100 -11.2 -5.60689 | opp_overlap 452980 AATACTAAATAAAAA GCTAGAAATA TTAA TATTTCTAGC TTTTTTGTTATGTAG TERM 454 453003 - 452980 - f 100 -11.2 -5.37171 | opp_overlap 452980 AATACTAAATAAAAA GCTAGAAATA TTAA TATTTCTAGC TTTTTTGTTATGTAG TERM 455 453124 - 453097 - f 73 -9.2 -2.80443 | gap 1 GGATATTTGATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGATTAGGTGTC ntrY 453241 - 455040 + | nitrogen regulation protein NtrY RF_0428 455163 - 456038 + | acetyltransferase TERM 456 456418 - 456381 - f 79 -6.6 -4.54727 | gap 2, overlap 456359 456358 456382 456385 456390 TTTTTTAAAGTAAAA CTGA--CAGAATCAAACT TGAG AGTTTGATCCTGGCTCAG AACGAACGCTATCGG TERM 457 456412 - 456385 - f 90 -12.2 -2.82666 | overlap 456359 456358 456382 456381 456390 TTAAAGTAAAACTGA CAGAATCAAACT TGAG AGTTTGATCCTG GCTCAGAACGAACGC TERM 458 456407 - 456390 - f 70 -7.1 -3.59984 | overlap 456385 456382 456381 GTAAAACTGACAGAA TCAAACT TGAG AGTTTGA TCCTGGCTCAGAACG TERM 459 456462 - 456485 + F 83 -10.4 -3.14132 | opp_overlap 456466, overlap 456466 TGCAAGTCGGACGGA CTAATTGGGG CTTG CTCCAATTAG TTAGTGGCAGACGGG TERM 460 457875 - 457856 - f 72 -9.2 -2.65808 | opp_overlap 457852 457856, overlap 457853 AGTCGTAACAAGGTA GCCGTAGG GGAA CCTGCGGC TGGATTACCTCCTTA TERM 461 457856 - 457875 + F 86 -11.4 -2.5602 | opp_overlap 457856 457853, overlap 457852 AGTCGTAACAAGGTA GCCGTAGG GGAA CCTGCGGC TGGATTACCTCCTTA TERM 462 458224 - 458234 + G 70 -4 -5.0538 | CATAATCTTGAGCGG TTGT GCT ACAA TTTTTTCCGGTACGA RF_0429 458171 - 458587 + | putative lipoprotein RF_0430 458899 - 459291 + | hypothetical protein RF_0431 459340 - 459939 + | hypothetical protein RF_0432 460218 - 460367 + | hypothetical protein TERM 463 460470 - 460454 - f 75 -8.1 -3.67597 | overlap 460457 CGTCTGAGCTAAGAA GAATTAC GTA GTAATTC GACGAAGCAAGAAAG TERM 464 460482 - 460518 + F 74 -5.4 -4.92314 | opp_overlap 460485 460493, overlap 460485 460493 ATTCGACGAAGCAAG AAAGAAAAAAATTCTG ATTTA CAGAATTTTTTTATTA TTTTTCTGGATTGCT TERM 465 460485 - 460515 + F 80 -7.1 -4.55383 | opp_overlap 460485 460493, overlap 460482 460493 CGACGAAGCAAGAAA GAAAAAAATTCTG ATTTA CAGAATTTTTTTA TTATTTTTCTGGATT TERM 466 460515 - 460485 - f 76 -7.1 -4.34737 | opp_overlap 460482 460485 460493, overlap 460493 CGACGAAGCAAGAAA GAAAAAAATTCTG ATTTA CAGAATTTTTTTA TTATTTTTCTGGATT TERM 467 460493 - 460507 + F 91 -4.3 -6.04419 | opp_overlap 460485 460493, overlap 460485 460482 CAAGAAAGAAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 468 460507 - 460493 - f 91 -4.3 -6.08342 | opp_overlap 460493 460485 460482, overlap 460485 CAAGAAAGAAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 469 460649 - 460633 - f 86 -3.8 -5.80727 | opp_overlap 460633 AAAAACAATAAAAAA TACTAA TAATT TTAGTA TTTTTAGCTGGATCC corA 460940 - 461899 + | magnesium/cobalt transporter CorA RF_0434 462082 - 462639 + | hypothetical protein RF_0435 462691 - 463302 + | transposase RF_0436 463277 - 463720 + | transposase TERM 470 464176 - 464163 - g 73 -8.1 -3.53761 | TAATGCTGGGCTAAA CCAGG GAAA CCTGG ACTCCATATTCAAAA RF_0437 463717 - 464517 + | transposase/IS protein TERM 471 465948 - 465931 - gT 72 -2.8 -5.47914 | AAAAAGCACAAAAAA TTATAG AAGAAA CTATAA CGGATTTTTTAGTTG RF_0439 467361 - 466054 - | MFS type sugar transporter spoT7 465405 - 466136 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein TERM 472 466334 - 466324 - GTf 82 -2.6 -5.95449 | AAATAAAAGAAAAAA TAAT TGA ATTA ACATTATATAAGGAA TERM 473 467766 - 467752 - gTR 72 -3.5 -5.17576 | GAGGAAGTTAAAAAA GGCAT CTATT ACGCC CGTAAATATCATGGA RF_0441 469591 - 468284 - | MFS type sugar transporter spoT8 467626 - 468342 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein TERM 474 469549 - 469563 + gT 87 -4.3 -5.74288 | CTATTGCTTCTTTTT GCTTA CGTGT TAAGC TTTTTTGTTCTTTCT TERM 475 469816 - 469830 + Tr 91 -4.3 -6.04419 | opp_overlap 469816 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 476 469830 - 469816 - TR 70 -4.3 -4.77157 | opp_overlap 469816 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT RF_0442 470950 - 470276 - | hypothetical protein TERM 477 470982 - 470996 + r 72 -2.8 -5.50723 | AGTTGTTATTATCTA GTATGA CCT TCATTC TTTTTATTTTGCTGA RF_0443 472313 - 471342 - | hypothetical protein TERM 478 472086 - 472096 + g 83 -6.8 -4.84182 | TTTAGAAGAGATATT CTGC TCG GCAG TTTCTTCTTTTTTGC RF_0444 473719 - 472670 - | TPR repeat-containing protein TERM 479 473115 - 473126 + g 81 -3 -5.73563 | CTAAAAAATCTTTCT GATT CTTC AATC TTTTTTTCATTTAGT TERM 480 473997 - 473981 - H 80 -5.3 -5.28481 | opp_overlap 473936 473981 TAGCTAACTAAAAAA TTAATAA ATA TTATTAA TTAGTTGTATTTTTG RF_0445 474106 - 474516 + | hypothetical protein RF_0446 474604 - 475086 + | hypothetical protein TERM 481 475909 - 475924 + G 79 -4.7 -5.24129 | TATTACTCCTTGACG GCTAC GATGAA GTAGC TTTTTTATCCCAAAA TERM 482 476521 - 476541 + G 71 -8.5 -2.82668 | opp_overlap 476520 476521, overlap 476520 TATTAAAAAGAGAAG GAATAAATT ATC AATTTATTC ATTTAACATTTCAAG TERM 483 476541 - 476521 - g 72 -8.5 -3.05531 | opp_overlap 476521 476520, overlap 476520 TATTAAAAAGAGAAG GAATAAATT ATC AATTTATTC ATTTAACATTTCAAG TERM 484 476911 - 476899 - g 71 -7.7 -3.44672 | overlap 476897 TTGTACTAAAAGATA TCCCA ATT TGGGA ACAACATATAATAGA RF_0447 475188 - 477050 + | NACHT domain-containing protein RF_0448 477280 - 478701 + | hypothetical protein TERM 485 479189 - 479169 - g 73 -7.7 -3.59649 | opp_overlap 479162, overlap 479160 AAATAAGGTTGGAAA CCAGTAATT TTA AATTACTAG ATGCTGGAGCAAATA RF_0449 478898 - 479896 + | hypothetical protein TERM 486 480232 - 480208 - gT 77 -2.9 -5.59502 | overlap 480210 GAAAAAATTAAAAAA GGTATTTACTA CGC TCGTAAATATC ACGGCTTACAAATGC RF_0451 481147 - 480716 - | MFS type sugar transporter spoT1 480073 - 480774 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0452 482022 - 481300 - | MFS type sugar transporter rodA 483328 - 482156 - | rod shape-determining protein RodA TERM 487 483329 - 483357 + r 83 -10.9 -2.80113 | opp_overlap 483323, overlap 483354 ATAACTAATCGTCAT GAGCTACGCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA TERM 488 483354 - 483390 + r 71 -8.1 -3.23152 | opp_overlap 483323, overlap 483329 GCCGTAGGCTGCGTG GCAATCTCATGAAATAA TAA TAAATTCCTGAGATTGC TTCGTCAATTGCTAT ptrB 485522 - 483444 - | protease II TERM 489 484246 - 484273 + g 70 -6.4 -4.27007 | gap 1, overlap 484249 484250 ATTCTCTTTACTTGA TACTCTTCAGGAT TAA AGCCTGAAG-GTA TTTCTTGGGTCTTTA TERM 490 485574 - 485609 + r 70 -8.4 -3.05963 | gap 1 AATAATTTTTTATTT TTCTG-GATACCGTGGT CAA GCCACGGTATGACAGAG TGTTAAAATCAAACT nuoL3 487121 - 485589 - | putative monovalent cation/H+ antiporter subunit D TERM 491 486533 - 486519 - G 75 -5 -5.07567 | TGATATTCCAAAAAA CTTAAG TAT CTCAAG ACCGCTAAATAATTT vapC1 487527 - 487123 - | toxin of toxin-antitoxin system VapC vapB1 487829 - 487518 - | antitoxin of toxin-antitoxin system VapB nuoL2 489337 - 487874 - | putative monovalent cation/H+ antiporter subunit D RF_0459 489559 - 489437 - | hypothetical protein nuoN2 490910 - 489624 - | putative monovalent cation/H+ antiporter subunit D mnhC 491412 - 491050 - | putative monovalent cation/H+ antiporter subunit C TERM 492 491421 - 491390 - G 83 -11 -2.86743 | gap 1, opp_overlap 491385 AAATGTGACATTACA TTGTCATACCGTGGC CTC GCCACGGTATC-CAA AAAAAATTTAAAAAA virB9_1 492225 - 491473 - | VirB9 protein virB8_1 492925 - 492227 - | VirB8 protein RF_0464 493387 - 493566 + | hypothetical protein virB8_2 493616 - 494347 + | VirB8 protein virB9_2 494334 - 494810 + | VirB9 protein precursor virB10 494905 - 496350 + | VirB10 protein virB11 496347 - 497351 + | VirB11 protein TERM 493 497603 - 497586 - f 79 -9.9 -2.8934 | CTTTAAAGTACTAGA TTCCTGC TTTC GCAGGAA TGACATAGGCAGTTT virD4 497672 - 499447 + | VirD4 protein TERM 494 499929 - 499941 + G 74 -6.3 -4.35461 | opp_overlap 499927 499929 TCGGTACAAAAATTA TTGCT AGT AGCAA TTTTGGTGATGTTGG gppA 499457 - 500869 + | guanosine pentaphosphate phosphohydrolase TERM 495 500960 - 500989 + F 85 -11.1 -3.21827 | opp_overlap 500967, overlap 500967 AGCGGGGATCCAGAC TAAAAAATCTTTA ATTT TAAAGATTTTTTA TTACATAGTTTTTGT TERM 496 500982 - 500967 - f 79 -4.8 -5.22312 | opp_overlap 500960 500967 ATCCAGACTAAAAAA TCTTTA ATTT TAAAGA TTTTTTATTACATAG TERM 497 500967 - 500982 + F 82 -4.8 -5.4833 | opp_overlap 500967, overlap 500960 ATCCAGACTAAAAAA TCTTTA ATTT TAAAGA TTTTTTATTACATAG TERM 498 501003 - 501037 + F 100 -17.6 -2.52896 | opp_overlap 501009 501013, overlap 501009 501013 TATTACATAGTTTTT GTAAAATAAAGCTTTT TTT AAAAGCTTTATTTTAC TGGATTCCCGCCTAC TERM 499 501009 - 501031 + F 100 -10.8 -4.30978 | opp_overlap 501009 501013, overlap 501003 501013 ATAGTTTTTGTAAAA TAAAGCTTTT TTT AAAAGCTTTA TTTTACTGGATTCCC TERM 500 501031 - 501009 - f 93 -10.8 -4.08394 | opp_overlap 501009 501003 501013, overlap 501013 ATAGTTTTTGTAAAA TAAAGCTTTT TTT AAAAGCTTTA TTTTACTGGATTCCC TERM 501 501027 - 501013 - f 80 -7.2 -4.64861 | opp_overlap 501009 501003 501013, overlap 501009 TTTTTGTAAAATAAA GCTTTT TTT AAAAGC TTTATTTTACTGGAT TERM 502 501013 - 501027 + F 80 -7.2 -4.7261 | opp_overlap 501013 501009, overlap 501009 501003 TTTTTGTAAAATAAA GCTTTT TTT AAAAGC TTTATTTTACTGGAT TERM 503 501165 - 501140 - f 100 -11.9 -3.88232 | overlap 501142 CGGTCTACACAACAA GACATTCCTGC TTTC GCAGGAATGAC ATCGAAATCTTTTTA TERM 504 501163 - 501142 - f 100 -13.1 -3.52874 | overlap 501140 GTCTACACAACAAGA CATTCCTGC TTTC GCAGGAATG ACATCGAAATCTTTT RF_0471 501268 - 502425 + | Phage portal protein RF_0472 502422 - 502709 + | hypothetical protein RF_0473 502901 - 503401 + | cell surface antigen-like protein Sca7 RF_0474 503398 - 506040 + | cell surface antigen-like protein Sca7 TERM 505 506061 - 506082 + GF 72 -7.3 -3.95022 | TCGGTAGTGTTACTA GTACCGG AGGTGTGG CCGGTAC TTTAGTGTTCATAGG RF_0475 506009 - 507535 + | cell surface antigen-like protein Sca7 TERM 506 508687 - 508677 - g 71 -5.4 -4.71426 | TGCTGATGAAGAAAA TAGC TCT GCTA CTATAAATATCCAAG TERM 507 509805 - 509795 - g 70 -4 -5.1244 | overlap 509804 TTACTAATATAAAAA TGTT AAA AACA GGTAACGGTAATGTA RF_0476 507532 - 509940 + | cell surface antigen-like protein Sca7 TERM 508 511466 - 511454 - g 77 -7.7 -4.14392 | CGGTAATCCCGAAAA TCCTG ATC CAGGA GGCGGTGATCCAGAG TERM 509 511942 - 511926 - g 71 -7.9 -3.53712 | overlap 511922 511927 AGTCTTAATAATCAA GCGGCAG TAG CTGCCGG TGATGAGGATAATAT TERM 510 511941 - 511927 - g 86 -11.4 -2.71745 | overlap 511926 511922 GTCTTAATAATCAAG CGGCAG TAG CTGCCG GTGATGAGGATAATA RF_0477 510075 - 512240 + | cell surface antigen-like protein Sca7 RF_0478 512396 - 512707 + | cell surface antigen-like protein Sca7 RF_0479 513810 - 512704 - | hypothetical protein RF_0480 513992 - 514876 + | hypothetical protein TERM 511 514887 - 514870 - g 78 -5.7 -4.91109 | opp_overlap 514869 TCCTTATGATAAAAA TCAATAA AGTT TTATTGA GCTTACTTTGCTTAG RF_0481 514860 - 515705 + | hypothetical protein TERM 512 515769 - 515779 + F 73 -8.2 -3.38002 | overlap 515772 GCTAAAAGTGGTGTT GCCC GTA GGGC TCTTATGTCATTCCT cysQ 515934 - 516710 + | 3'(2'),5'-bisphosphate nucleotidase TERM 513 516819 - 516835 + T 71 -8.1 -3.31144 | overlap 516822 TGAGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGA mutS 519546 - 516886 - | DNA mismatch repair protein TERM 514 518838 - 518861 + g 74 -4 -5.1361 | TTCCTTTAATATCTT TCATTTTATA AAAG TCTAAAATGA TTTTTTCGCATTTAT TERM 515 518905 - 518891 - G 100 -7.2 -5.47399 | TTAATCGCAAAAAAA CTATCA ACC TGATAG GTAATACGAAAATTT RF_0484 519857 - 519606 - | hypothetical protein RF_0485 520630 - 519809 - | hypothetical protein lacA 521134 - 520697 - | ribose-5-phosphate isomerase B TERM 516 521538 - 521528 - g 71 -6.8 -4.09739 | overlap 521529 TCAAGCTTTGTAAAA CCGT TAA ACGG GGTAATTATTACCGA nlpD1 521186 - 521854 + | membrane proteins related to metalloendopeptidase RF_0488 521855 - 522544 + | metal-dependent hydrolase RF_0489 522563 - 522802 + | antitoxin of toxin-antitoxin stability system RF_0490 522808 - 523074 + | toxin of toxin-antitoxin system TERM 517 523916 - 523902 - g 74 -5.7 -4.65512 | AAAAGAATGATAAAA GGTGA AAAAG TCACC CATGAGAGTAGTGGT thyX 523092 - 523976 + | FAD-dependent thymidylate synthase TERM 518 524652 - 524634 - g 77 -4.5 -5.19261 | opp_overlap 524634 524637, overlap 524637 AAATTTATGAAAAAA TTACCGG TGATG CCGGTTA TTTTGATACTAAAAT TERM 519 524637 - 524649 + G 74 -6.9 -4.27443 | opp_overlap 524637 524634, overlap 524634 TTTATGAAAAAATTA CCGGT GAT GCCGG TTATTTTGATACTAA tolB 524171 - 525505 + | translocation protein TolB TERM 520 525666 - 525652 - T 91 -4.3 -6.04419 | opp_overlap 525652 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG TERM 521 525689 - 525705 + T 71 -8.1 -3.31144 | overlap 525692 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGG TERM 522 525925 - 525937 + T 93 -4.9 -6.04324 | CACTTGACCACTATG GTTTA AGA TAAAC TTTTTTATTTTTTCA rpoH 526785 - 525904 - | RNA polymerase factor sigma-32 cox11 526871 - 527434 + | cytochrome C oxidase assembly protein TERM 523 527499 - 527472 - T 73 -9.2 -2.79796 | gap 1, overlap 527439 TGTTATTTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGGCACGGTATC RF_0495 528511 - 527459 - | hypothetical protein trmU 528722 - 529819 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 524 529927 - 529900 - f 73 -9.2 -2.80113 | gap 1, overlap 529872 TATTATTTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGAAAAAATTAT atrC1 529988 - 531385 + | cationic amino acid transporter-1 hisS 531673 - 532920 + | histidyl-tRNA synthetase RF_0499 532984 - 533715 + | ABC transporter ATP-binding protein RF_0500 533782 - 534606 + | ABC transporter ATP-binding protein RF_0501 536156 - 535407 - | hypothetical protein TERM 525 535798 - 535817 + g 72 -3.6 -5.31059 | GCTAACAATGCGTTA TTTGAAGA ATTA TCTTCCAA TTTTTTAGTTAATGT RF_0502 537058 - 536300 - | hypothetical protein TERM 526 537444 - 537460 + r 71 -8.1 -3.31263 | overlap 537401 537447 TGAGATTGCTTCGTC GAATTAC TGC GTAATTC TTCTCGCAATGACGT RF_0503 538403 - 537798 - | hypothetical protein TERM 527 538493 - 538520 + H 73 -9.2 -2.80113 | gap 1, overlap 538517 TAATGTGTCTCGTCA TTGCGA-GCAGCC GTA GGCTGCGTAGCAA TCTCATGAAATAATA tolQ 538786 - 539514 + | TolQ protein tolR 539514 - 539945 + | TolR protein RF_0506 539935 - 540918 + | periplasmic protein TonB TERM 528 541019 - 541055 + T 87 -7.6 -4.84359 | opp_overlap 541029, overlap 541029 CTTGACCACGGGATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTATGGACCTAG TERM 529 541029 - 541045 + T 86 -3.8 -5.80727 | opp_overlap 541029, overlap 541019 GGATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT RF_0507 542299 - 541448 - | hypothetical protein spoT2 542439 - 543158 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein proP2 544425 - 543109 - | proline/betaine transporter aprE 546100 - 544565 - | alkaline protease secretion protein AprE TERM 530 546197 - 546185 - R 91 -3.4 -6.15828 | opp_overlap 546185 TCCAGTAAAAAAAAA TCTG TAAAT CAGA ATTTTTTTTAATTAT aprD 548056 - 546302 - | alkaline protease secretion ATP-binding protein AprD asd 549083 - 548067 - | aspartate-semialdehyde dehydrogenase TERM 531 548912 - 548926 + g 91 -7.2 -5.28176 | opp_overlap 548903 548911 548912 548914 TTAAATTAGTTAAAC TACTGA TTT TCAGTA TTTTTTCTCCATAAC pkcI 549439 - 549080 - | protein kinase C inhibitor 1 RF_0514 549927 - 549574 - | hypothetical protein hslV 550319 - 550867 + | ATP-dependent protease peptidase subunit TERM 532 550906 - 550894 - g 79 -4.7 -5.28778 | opp_overlap 550902 ACTACTTATAAAAAA GACCC TAT GGGGC TTACCCCTTCTCAAA TERM 533 551447 - 551434 - g 71 -8.1 -3.36569 | opp_overlap 551442, overlap 551432 GGAAGTTTTGAAATA CCAGG CATG CCTGG AGCATCTATGGGCGT hslU 550864 - 552216 + | ATP-dependent protease ATP-binding subunit TERM 534 552309 - 552325 + F 71 -8.1 -3.31144 | overlap 552312 TGAGATTGCTTCGTC GAATTAC TAT GTAATTC TTCTCGCAATGACAA RF_0517 552379 - 552519 + | hypothetical protein RF_0518 552665 - 553915 + | Mg chelatase-related protein TERM 535 553975 - 553965 - f 71 -8.2 -3.22475 | overlap 553963 GTCATTGCGAGAAGA CGCC ATA GGCG TTGACGAAGCAATCT TERM 536 553978 - 554019 + F 75 -9.5 -2.79878 | gap 1, opp_overlap 553984 553988, overlap 553977 553979 GACGCCATAGGCGTT GA-CGAAGCAATCTCAGGCA AAG TTCCTGAGATTGCCACGCTC CTTTCAGTCGCTCGC TERM 537 553979 - 554017 + F 71 -8.8 -2.9462 | opp_overlap 553984 553988, overlap 553978 553977 ACGCCATAGGCGTTG ACGAAGCAATCTCAGGCA AAG TTCCTGAGATTGCCACGC TCCTTTCAGTCGCTC TERM 538 554012 - 553984 - f 100 -14.7 -3.14683 | opp_overlap 553979 553978 553977, overlap 553988 ATAGGCGTTGACGAA GCAATCTCAGGCA AAG TTCCTGAGATTGC CACGCTCCTTTCAGT TERM 539 554008 - 553988 - f 73 -8.3 -3.39895 | opp_overlap 553979 553978 553977, overlap 553984 GCGTTGACGAAGCAA TCTCAGGCA AAG TTCCTGAGA TTGCCACGCTCCTTT TERM 540 554957 - 554980 + G 81 -4 -5.55769 | overlap 554955 ACTCCTATGATTGTA GCTTATAA AGTTAATC TTATAAGC TTTTTTATTATCAGG lpxB 554105 - 555277 + | lipid-A-disaccharide synthase RF_0520 555545 - 555246 - | hypothetical protein TERM 541 555329 - 555376 + g 75 -2.4 -5.63103 | opp_overlap 555327 TAATAAACATTAATA TTAATATAATAACAAAATATAT TTCC ATATTTTTTCTTATAGTATTAA TTTTTTTCATTAAAA TERM 542 555392 - 555409 + g 84 -3.5 -5.82172 | TTTTTTTCATTAAAA TTTCTAA ATCA TTGGAAA TTTTTTTGTATTCCT TERM 543 555600 - 555617 + H 78 -2.1 -5.73978 | TATAGTAATATGAAC TATGAAT AAAG ATTTATA TTTTTTGTTTGTAAT RF_0521 555904 - 556923 + | hypothetical protein cyaY 557063 - 557368 + | frataxin-like protein TERM 544 557558 - 557544 - g 83 -4.4 -5.56372 | AAAGGAAAATAAAAA TAATTA TGA TAATTA TGAAGAAATTGTCAG RF_0523 557365 - 558114 + | hypothetical protein RF_0524 558373 - 559140 + | hypothetical protein RF_0525 559127 - 560029 + | hypothetical protein TERM 545 560332 - 560353 + G 78 -6.7 -4.51174 | gap 1, overlap 560320 CAATTACGATGCATA GCG-TAATAC TTT GTATTATCGC TTTTACTTATAGTCC bioY1 560157 - 560741 + | BioY family protein TERM 546 560775 - 560792 + G 89 -8.5 -4.61873 | TGGACTTTTGACGAG GCTAAAG AAAT CTTTAGC TTTTCGTTTATGGAG bioB 560751 - 561680 + | biotin synthase TERM 547 562161 - 562148 - g 70 -3.8 -4.98917 | opp_overlap 562157 GAAAATACAATAAAA GCAG GGATAG CTGC AGGATATGTAGCTTG RF_0528 561893 - 562288 + | hypothetical protein gltX 564077 - 562734 - | glutamyl-tRNA synthetase TERM 548 563879 - 563897 + g 74 -7.6 -3.88946 | opp_overlap 563879 TCTGATCCCAATTAA GATTTAAA AAT TTTAAATC TTCTTCTATAGCGTC TERM 549 564254 - 564242 - R 71 -7.7 -3.44186 | AATGACATTAACTAA GTCAC GGG GTGAC ACTAAACCATTTACG topA 566595 - 564265 - | DNA topoisomerase I TERM 550 566695 - 566709 + r 74 -5.8 -4.73388 | opp_overlap 566695 TCCAGCGTAAAGCGA GATTTT CAA AAAATC TTTTTGATCAAGATT TERM 551 566754 - 566734 - R 86 -9.9 -3.66646 | opp_overlap 566738 566740, overlap 566738 AAGATTTTATTCAAA TAAAGCTTT TAA AAAGCTTTA AAGTATTGGATTCCC TERM 552 566750 - 566738 - R 74 -6.3 -4.46112 | opp_overlap 566738 566740, overlap 566734 TTTTATTCAAATAAA GCTTT TAA AAAGC TTTAAAGTATTGGAT dprA 567943 - 566795 - | putative DNA processing protein DprA TERM 553 567172 - 567161 - G 74 -7.2 -4.08485 | TGGATCTAAAGGAAA GCCG GGAA CGGC AAATATTTCCCTATT tdpX1 568722 - 568114 - | thioredoxin peroxidase 1 hflC1 569733 - 568798 - | membrane protease subunit stomatin/prohibitin-like protein TERM 554 569436 - 569422 - G 77 -10 -2.63596 | opp_overlap 569414 CGTTATGGCATAGTA GGGGTT ATT AACCCC GTAAGATGCTGCTAT RF_0534 571672 - 570104 - | hypothetical protein TERM 555 571622 - 571610 - G 87 -7.7 -4.82212 | opp_overlap 571606 CAAACAATAAATAAA GGCTA AAA TAGCC GATAATTTAATTAAT RF_0535 571708 - 572172 + | Holliday junction resolvase-like protein TERM 556 572277 - 572257 - f 71 -5.5 -4.5448 | opp_overlap 572257 572254, overlap 572254 GATCCAGAAAAATAA CTTCAATAT CCG ATATAGAAG TTGTATATTCAACAA TERM 557 572326 - 572295 - f 95 -10.4 -4.70169 | opp_overlap 572298, overlap 572298 GTATATTCAACAAAA TAAGCCTATAAAAA CTTG TTTTTATAGGCTTT ACTGGATTCCCGCCT TERM 558 572298 - 572323 + F 100 -12.1 -3.794 | opp_overlap 572295 572298 TATTCAACAAAATAA GCCTATAAAAA CTTG TTTTTATAGGC TTTACTGGATTCCCG TERM 559 572323 - 572298 - f 100 -12.1 -4.44914 | opp_overlap 572298, overlap 572295 TATTCAACAAAATAA GCCTATAAAAA CTTG TTTTTATAGGC TTTACTGGATTCCCG RF_0536 572451 - 572612 + | plasmid maintenance system antidote protein RF_0537 572700 - 572939 + | AbrB family transcriptional regulator RF_0538 573036 - 573893 + | dTDP-4-dehydrorhamnose reductase TERM 560 573965 - 573949 - f 71 -8.1 -3.31144 | opp_overlap 573964, overlap 573952 TCGTCATTGTGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCTCA capD 574092 - 575117 + | CapD protein rffE 575110 - 576243 + | UDP-N-acetylglucosamine 2-epimerase TERM 561 576301 - 576317 + GF 79 -3.7 -5.55664 | opp_overlap 576301 ATTAATAAAACCTAA CACTTTA TTT TTAAGTG TTTTTTTACTAATAA RF_0541 576203 - 576955 + | hypothetical protein TERM 562 576983 - 576947 - f 100 -13.1 -4.87273 | opp_overlap 576946 576945, overlap 576952 AACATTGGAGAAAAA CCAAACTAGGAAACCAT TTT ATGGCTTCCTAGATGGG AATTATCATTTAAAA TERM 563 576978 - 576952 - f 100 -14.6 -4.38116 | opp_overlap 576946 576945, overlap 576947 TGGAGAAAAACCAAA CTAGGAAACCAT TTT ATGGCTTCCTAG ATGGGAATTATCATT RF_0542 577562 - 578230 + | hypothetical protein RF_0543 578677 - 580485 + | glycosyltransferase RF_0544 581485 - 580490 - | RND family efflux transporter MFP subunit TERM 564 581395 - 581406 + g 77 -3 -5.66229 | GTACTTTAGTTGCTT TTAC TCCT GTAA TTTTTTCTTCTTCCT TERM 565 581662 - 581674 + r 74 -6.3 -4.41348 | opp_overlap 581644 581662 AGCGAGATAAATCGA GCTTT AAA AAAGC TTTATTTGAAAAAAA TERM 566 581702 - 581692 - R 82 -2.6 -6.09133 | overlap 581700 TATTTGAAAAAAAAA TTAT CTA ATAA AAAAATCTTTGAAAT TERM 567 581709 - 581722 + r 74 -3.1 -5.44119 | opp_overlap 581700 ATCTAATAAAAAAAT CTTTG AAAT CAAGG TTTTTTTAGCATGGA TERM 568 581811 - 581847 + r 87 -7.6 -4.82901 | opp_overlap 581821, overlap 581821 CTTGACCACGGGATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTATGGACCCCG TERM 569 581821 - 581837 + r 86 -3.8 -5.80727 | opp_overlap 581821, overlap 581811 GGATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT TERM 570 581852 - 581885 + r 85 -11.1 -3.28001 | gap 1 ATTTTTTATTGTTTT TATG-GACCCCGTGGT CAA GCCACGGGGTGACATA TTGGATTTACCGCTC RF_0545 582688 - 581921 - | hypothetical protein RF_0546 583456 - 582698 - | hydrolase or acyltransferase RF_0547 583489 - 584661 + | glycosyltransferase RF_0548 585495 - 584707 - | ABC transporter, ATP-binding protein TERM 571 585526 - 585492 - G 78 -9.6 -3.31515 | opp_overlap 585497 585499, overlap 585493 585497 AAACATTTGTTATAA CCATATTTCTAATAAT TGG ATTATTAGAAATGTGA TAAAATCCTTGAGTT TERM 572 585525 - 585493 - G 82 -10.9 -2.58427 | opp_overlap 585497 585499, overlap 585492 585497 AACATTTGTTATAAC CATATTTCTAATAAT TGG ATTATTAGAAATGTG ATAAAATCCTTGAGT TERM 573 585497 - 585521 + r 81 -10.3 -2.80291 | opp_overlap 585493 585492 585497, overlap 585499 TTTGTTATAACCATA TTTCTAATAAT TGG ATTATTAGAAA TGTGATAAAATCCTT TERM 574 585521 - 585497 - R 81 -10.3 -2.96274 | opp_overlap 585497 585499, overlap 585493 585492 TTTGTTATAACCATA TTTCTAATAAT TGG ATTATTAGAAA TGTGATAAAATCCTT TERM 575 585613 - 585591 - R 74 -9.3 -3.0169 | opp_overlap 585593, overlap 585588 585593 585606 AATTGTTAGAAAGTA TATTAGGGT CAATT ACCCTAATA TTAGGAGTTAAGTTT TERM 576 586352 - 586342 - R 82 -2.6 -6.09133 | CACTTGAAAAAAAAA TTAT CTA ATAA AAAAATCTTTGAAAT TERM 577 586691 - 586671 - R 75 -4.7 -5.09521 | opp_overlap 586671 586665, overlap 586665 GGAAGAAAGTAAAAA GGCAGAT AAATAAA ACCTGCC TTTTTGTAATTATTA rpsD 587321 - 586704 - | 30S ribosomal protein S4 cyoB 587439 - 588356 + | protoheme IX farnesyltransferase RF_0551 589358 - 588483 - | putative lyase RF_0552 589474 - 589953 + | hypothetical protein TERM 578 590395 - 590385 - T 81 -4 -5.67283 | AATCCAAATAAAAAA TCAT TAT ATGA AGATTTTATTATTTT TERM 579 590648 - 590658 + T 72 -2.4 -5.43414 | CATTCTTAGCAACGG CAGG AAT CCAG TTTTTTCTCTGTCAT TERM 580 590731 - 590712 - T 78 -2 -5.77571 | overlap 590713 590714 AGGAAAAAATAAAAA CCTGGACC CCGT GGTCAAGC CACGGGGTGACATTA TERM 581 590743 - 590714 - T 72 -8.6 -2.99289 | gap 1, overlap 590713 590712 GAAAAAATAAAAACC TG-GACCCCGTGG TCAAG CCACGGGGTGACA TTAAGGACTACTGGA asmA 593390 - 590865 - | Outer membrane assembly protein TERM 582 591277 - 591289 + g 71 -7.7 -3.45031 | overlap 591272 TTGCCTTGCGTTATA TTGCC GCC GGCAA TTAAATTTTTGAAAG RF_0554 593667 - 594611 + | transposase rimM 595114 - 594617 - | 16S rRNA-processing protein TERM 583 597793 - 597779 - g 77 -4.2 -5.40464 | TACCACAAACAAAAA CAGAAG AAG CTGCTG ATTCAGTTAACCATT RF_0556 595177 - 597810 + | hypothetical protein xseB 597824 - 598066 + | exodeoxyribonuclease VII small subunit TERM 584 598196 - 598224 + G 72 -4.7 -4.83615 | overlap 598197 CCTAATATTGTTTTA TTCATCATAATAA ATA TTGTTTTGATGAG TTTTTGTGCGGGATG RF_0558 598139 - 598486 + | hypothetical protein TERM 585 598779 - 598792 + G 78 -6.7 -4.46112 | AATTTTTGTCTGTAT GCTTG GAAC CAAGC TTTATTTACATAAGA RF_0559 598513 - 598947 + | hypothetical protein mpg 599609 - 599076 - | 3-methyladenine DNA glycosylase RF_0561 599904 - 599602 - | hypothetical protein RF_0562 600156 - 599908 - | hypothetical protein TERM 586 600097 - 600083 - G 79 -10 -2.84527 | overlap 600082 CAAGTGGGATGAAAG CGGCAA TTA TTGCCG AGTAGCGGGGAAATG nuoE 600768 - 600265 - | NADH dehydrogenase subunit E nuoD 602119 - 600944 - | NADH dehydrogenase subunit D TERM 587 602175 - 602159 - R 71 -8.1 -3.31263 | overlap 602162 ACGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCTCA TERM 588 602237 - 602210 - R 73 -9.2 -2.80113 | gap 1, opp_overlap 602206 602205, overlap 602182 TATTATTTCATGAGA TTGCCACGCAGCC TAA GGCTGC-TCGCAA TGACGGTTTTGATGT nuoC 602880 - 602257 - | NADH dehydrogenase subunit C nuoB 603382 - 602858 - | NADH dehydrogenase subunit B nuoA 603758 - 603387 - | NADH dehydrogenase subunit A TERM 589 603864 - 603837 - R 72 -9.2 -2.78816 | gap 1, opp_overlap 603832 603830, overlap 603813 GGATGTTTGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGTATGTTTAAT RF_0568 605133 - 603910 - | hypothetical protein RF_0569 605607 - 605134 - | hypothetical protein TERM 590 605713 - 605697 - H 71 -8.1 -3.31263 | overlap 605700 ACGTCATTGCGAGAA GAATTAC ATA GTAATTC GACGAAGCAATCTTA RF_0570 605932 - 607191 + | Phage uncharacterized protein xerD 607594 - 608514 + | site-specific tyrosine recombinase XerD TERM 591 608735 - 608757 + G 95 -12.2 -3.59627 | opp_overlap 608735 TTAGAAAGAGAAGAA TTATGTGATG AAG CATCACATAA TTTAGCAAATTTAGT TERM 592 608757 - 608735 - g 100 -12.2 -4.06866 | opp_overlap 608735 TTAGAAAGAGAAGAA TTATGTGATG AAG CATCACATAA TTTAGCAAATTTAGT RF_0572 608597 - 609667 + | hypothetical protein TERM 593 609815 - 609804 - g 77 -4.4 -5.29208 | AAAATAAAAAAGAAA CAGT GAAT ACTG AAACAAAAAATTTAG RF_0573 609779 - 609943 + | hypothetical protein TERM 594 610222 - 610210 - g 72 -3.5 -5.19328 | ATTTTACAAGAAAAA TTTTA TCC TAAAA GAAATTCTAAAGATT RF_0574 610000 - 610821 + | hypothetical protein TERM 595 611069 - 611052 - T 86 -11.3 -2.86164 | opp_overlap 611050 TTTTTAATGACTAGA TTCCCGC CTAC GCGGGAA AGCATTGTTGCATGA TERM 596 611147 - 611161 + T 87 -4.3 -5.73672 | opp_overlap 611147 GCAATCCAGTAAAAA TTCTG TATAT CAGAA TTTTTTTAATTATTT TERM 597 611161 - 611147 - T 70 -4.3 -4.77157 | opp_overlap 611147 GCAATCCAGTAAAAA TTCTG TATAT CAGAA TTTTTTTAATTATTT fabI 612070 - 611288 - | enoyl-(acyl carrier protein) reductase TERM 598 611911 - 611926 + g 75 -4.7 -4.94902 | AACCTATTTCCTCAG CGAGT GGTTTA ACTCG TTTTTCTAGTACTTC lnt 612146 - 613636 + | apolipoprotein N-acyltransferase TERM 599 614055 - 614040 - g 72 -4.8 -4.89477 | overlap 614047 CTTCTAATAATAAAA TTGAAT ATCT ATTCAA AGAAATAGAAAGTGA RF_0577 613769 - 614260 + | hypothetical protein TERM 600 614561 - 614547 - f 91 -4.3 -6.04419 | opp_overlap 614547 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG TERM 601 615162 - 615174 + F 76 -6.3 -4.7268 | TTATTTACAGATAGC CTCTA AGG TAGAG TTTTCTTGACTATTT TERM 602 615401 - 615411 + F 85 -2.6 -6.17669 | opp_overlap 615401 ATGTTATCTCTAATA TTTT TCA AAAA TTTTTTTCTTTTCTT RF_0578 615504 - 616301 + | hypothetical protein RF_0579 616306 - 617139 + | ABC transporter permease protein RF_0580 618223 - 617306 - | ankyrin repeat-containing protein TERM 603 618347 - 618370 + r 74 -4 -5.18561 | opp_overlap 618364 TTATATACAATATTT TTAATTTTTG CAAG CAATAATTAA TTTTTTAACTATTTA dsbB 618925 - 618383 - | disulfide bond formation protein DsbB lysK 619107 - 620684 + | lysyl-tRNA synthetase RF_0583 620962 - 621894 + | permease TERM 604 622540 - 622528 - g 72 -3.5 -5.25699 | ATTATAGAAGAAAAA TTAAA ATC TTTAA TGAATATACCGGTCT TERM 605 622594 - 622577 - g 74 -9.1 -3.10894 | ACGATCAGCATGGAA CGGCGAT TATT ACCGCCG CAGGGCTAATAAATG TERM 606 623011 - 623029 + G 77 -9 -3.29381 | opp_overlap 623022, overlap 623003 ATAGCAACAGGGCGA TCTGATTA TAA TAATCAGA TTAATAATGTTATGG TERM 607 623957 - 623940 - g 79 -6.9 -4.6526 | opp_overlap 623939 623954, overlap 623942 AGAAATTGCTAAAAA CATGGGG ATTA CCCCAAG AGTTGCTCTTCTTTC TERM 608 623955 - 623942 - g 77 -8.1 -3.9318 | opp_overlap 623939 623954, overlap 623940 AAATTGCTAAAAACA TGGGG ATTA CCCCA AGAGTTGCTCTTCTT tme 622072 - 624375 + | malic enzyme RF_0585 624596 - 626545 + | hypothetical protein proP3 626797 - 628017 + | proline/betaine transporter TERM 609 628225 - 628209 - T 71 -8.1 -3.31144 | overlap 628212 TCGTCATTGCGAGAA GAATTAC ACA GTAATTC GACGAAGCAAGGAAG TERM 610 628258 - 628247 - T 79 -3.6 -5.5604 | overlap 628236 GCAAGGAAGAAAAAA CGAG TCTT CCCG ATTAAGTGTGTAAAC RF_0587 628528 - 628286 - | transposase TERM 611 628345 - 628357 + g 72 -3.3 -5.20216 | overlap 628352 TGTTCCAATTTGGTA TGGAC ATG GACCA TTTTTTGGTCATGTA RF_0588 629556 - 628603 - | transposase TERM 612 629595 - 629581 - R 81 -4.3 -5.45726 | opp_overlap 629573 629581 CAGAGCCGAAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTACTT TERM 613 629581 - 629595 + r 83 -4.3 -5.66868 | opp_overlap 629581, overlap 629573 CAGAGCCGAAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTACTT RF_0589 632983 - 629738 - | hypothetical protein TERM 614 630422 - 630433 + g 73 -4.4 -5.10064 | opp_overlap 630422 TTCTAAACGAGATAA GTTC TTTT GAAC TTTTTCTATATTGGA TERM 615 631059 - 631047 - G 73 -7.7 -3.60627 | opp_overlap 631047 TCATCCCACTCTAAA GCGAT ATT ATCGC TTCTACGCTCCTCAC TERM 616 631836 - 631847 + g 74 -3 -5.34309 | CTTGAATTATTAGTA TTAC GGAA GTAA TTTTTATTTACTGAT mdh 634060 - 633116 - | malate dehydrogenase TERM 617 633193 - 633205 + g 74 -6.3 -4.386 | CTTCTTTAGTTAGCT GTAGT TCT ACTAC TTTTATGACGCCTTC TERM 618 634232 - 634220 - H 73 -7.7 -3.6692 | opp_overlap 634218, overlap 634218 GCCGAGTCGAAAATA CCATG AAA CATGG AATTTTAATAAAATA RF_0591 634352 - 635077 + | ankyrin repeat-containing protein TERM 619 635252 - 635266 + T 95 -4.3 -6.25741 | opp_overlap 635252 CAATCCAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTTATTATTT TERM 620 635266 - 635252 - T 77 -4.3 -5.18357 | opp_overlap 635252 CAATCCAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTTATTATTT tlc2 636891 - 635368 - | ADP,ATP carrier protein TERM 621 637031 - 637004 - R 73 -9.2 -2.80113 | gap 1, overlap 636976 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGGAAAAACCGT pyrG 638943 - 637330 - | CTP synthetase TERM 622 637515 - 637533 + g 71 -7.6 -3.56576 | overlap 637511 ATACTACTCCGTTTT TTTCAAAA ATA TTTTGAAA TTCATTATTAAATTT kdsB 639690 - 638950 - | 3-deoxy-manno-octulosonate cytidylyltransferase mutT 640560 - 640135 - | ADP-ribose pyrophosphatase MutT TERM 623 640275 - 640293 + g 71 -7.5 -3.54459 | opp_overlap 640274 GATTCTGTAATTCAT GCTCATT TAAAC AATGAGC TTTAAGGAAAATTGA RF_0596 640761 - 641504 + | hypothetical protein RF_0597 641501 - 642067 + | alkylated DNA repair protein TERM 624 643132 - 643159 + G 88 -11.4 -3.23152 | opp_overlap 643127 643125 643124, overlap 643136 ACTATAAGGAGCGTG GCAATCTCAGGA TGTT TACTGAGATTGC TTCGTCAATTGCTAT TERM 625 643432 - 643444 + G 71 -9.1 -2.51464 | opp_overlap 643424, overlap 643431 AAAAATTCCCGAGAT TGCCG CGT CGGCA CTTCGTGCCTACTCG RF_0598 642132 - 643712 + | hypothetical protein TERM 626 644203 - 644187 - g 75 -8.1 -3.69256 | opp_overlap 644187 AGTGATGCAAGATAA TAGTGTT ATG AACACTA TGCATTATACAGGGA folE 643705 - 644277 + | GTP cyclohydrolase I proS 644449 - 645732 + | prolyl-tRNA synthetase RF_0601 645796 - 646023 + | antitoxin of toxin-antitoxin system StbD RF_0602 646166 - 646294 + | cytotoxic translational repressor of toxin-antitoxin system RelE RF_0603 646319 - 646558 + | hypothetical protein TERM 627 647197 - 647221 + G 77 -8.7 -3.57144 | opp_overlap 647196 647197 647206 TGAAGTAATAAAAGC TCTAGTAAATC TAG GATTTTCTAGA TTTGAAGCTCAAAAC ruvA 646715 - 647326 + | Holliday junction DNA helicase motor protein RF_0605 647425 - 648297 + | hypothetical protein ruvB 648360 - 649388 + | Holliday junction DNA helicase B TERM 628 650137 - 650123 - g 100 -7.2 -5.61596 | AGTTTTACAAAAAAA CATCTA AGC TAGATG CGATGGTTTCACCGA msbA1 649381 - 651144 + | multidrug resistance protein TERM 629 651632 - 651648 + G 71 -5.2 -4.64992 | AGCAAGGAAAATCCT GAAGTT TCTTT AACTTC TTTATATTTTTTGAC TERM 630 652130 - 652116 - g 72 -7.2 -3.79203 | ATACAAAAGGCGAAA TAGCAA TAA TTGCTA AACTTTACGGGTTGA ampG4 651320 - 652564 + | AmpG protein TERM 631 653440 - 653419 - g 72 -8.9 -2.59921 | overlap 653418 ATCAAGGTGCAGAAG GTATGAAAA CAGG TTTTCATAC ACCGGCAGGTTATAA dacF 652755 - 653675 + | penicillin-binding protein DacF precursor RF_0610 653990 - 653865 - | hypothetical protein TERM 632 654010 - 654023 + r 74 -6.7 -4.19577 | CAACACTTTCAGTTG CTCGT AATG ACGAG TTATTTTAAGGATTC rlpA 654721 - 654029 - | rare lipoprotein A precursor RF_0612 655313 - 654699 - | hypothetical protein TERM 633 655644 - 655622 - R 80 -6.4 -4.86133 | GATATAGAGTAAAAA TAGTAAGGTA TTA TATCTTACTA TCCGGTAATTTATTC ispZ 656174 - 655632 - | intracellular septation protein A RF_0614 657052 - 656204 - | FTR1 family protein RF_0615 657442 - 657062 - | hypothetical protein RF_0616 658648 - 657653 - | hypothetical protein RF_0617 658847 - 659473 + | protocatechuate-3,4-dioxygenase, beta subunit TERM 634 659727 - 659742 + G 72 -3.4 -5.1356 | TATATTATAGTGTTT TTATTA TCTA TAATAA TTTTTATTCCTAAAA tlpA 659679 - 660326 + | Thiol:disulfide interchange protein TlpA sppA1 660474 - 661388 + | Signal peptide peptidase SppA dut 661390 - 661836 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 635 661968 - 661984 + F 71 -8.1 -3.31144 | overlap 661971 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGG mltE1 661993 - 664068 + | soluble lytic murein transglycosylase precursor RF_0622 664144 - 664869 + | hypothetical protein TERM 636 665309 - 665289 - f 70 -8.3 -3.04416 | AAAATAAAGACTAGA TGCCGTG GTCAAGT CACGGCA TGACATAGTAGGGTT mccF 665371 - 666324 + | microcin C7 self-immunity protein RF_0624 669016 - 666446 - | hypothetical protein TERM 637 667033 - 667020 - G 84 -5.3 -5.34857 | TCAAATAAAATAAAA GCTTT GCTG AAAGC CGTGAGTTTTATTTG TERM 638 667811 - 667801 - G 82 -2.6 -6.04324 | opp_overlap 667801 GTAAAAAAGAAAAAA TTTT AGG AAAA TCCTTTTTATCCATT RF_0625 669168 - 669434 + | hypothetical protein RF_0626 670451 - 669573 - | glutamine amidotransferase TERM 639 670499 - 670547 + r 74 -3.8 -5.20154 | gap 1, opp_overlap 670499 670500, overlap 670500 670528 670531 ATGTTGTTCATAAAA GTCCCGTCATTGCGA-GCCAGCA TTTA TGCTGGCGTGGCAATCTCAGGAG TTTTTTAAATTATCT TERM 640 670547 - 670499 - R 72 -6 -4.37092 | gap 1, opp_overlap 670499 670500 670528 670531, overlap 670500 ATGTTGTTCATAAAA GTCCCGTCATTGCGA-GCCAGCA TTTA TGCTGGCGTGGCAATCTCAGGAG TTTTTTAAATTATCT TERM 641 670500 - 670546 + r 70 -7.3 -3.70465 | gap 1, opp_overlap 670499 670500, overlap 670499 670528 670531 TGTTGTTCATAAAAG TCCCGTCATTGCGA-GCCAGCA TTTA TGCTGGCGTGGCAATCTCAGGA GTTTTTTAAATTATC TERM 642 670546 - 670500 - R 78 -9.5 -3.21934 | gap 1, opp_overlap 670500 670499 670528 670531, overlap 670499 TGTTGTTCATAAAAG TCCCGTCATTGCGA-GCCAGCA TTTA TGCTGGCGTGGCAATCTCAGGA GTTTTTTAAATTATC coxA 672234 - 670636 - | cytochrome c oxidase polypeptide I TERM 643 670728 - 670743 + g 74 -6.2 -4.35581 | opp_overlap 670730 CACCATCACCCCAAG GATTGT TAGG ACAATC TTTTCCGTATTTTAG TERM 644 670938 - 670949 + g 70 -4.4 -4.75404 | opp_overlap 670938 CACCAATAAATGTAA TCCA AAAA TGGA TTTTTCCTAAAATTT RF_0628 673203 - 672484 - | hypothetical protein TERM 645 673549 - 673526 - R 71 -9 -2.58236 | opp_overlap 673525 673526 673540, overlap 673525 673529 TAAAGCGAGATTAAT CGAGCTTTTA ATTT TAAAAGCTCA CTGCTTTTATGTTTG TERM 646 673540 - 673558 + r 70 -6.1 -4.17307 | opp_overlap 673529 673526 673525, overlap 673526 673525 TCGAGCTTTTAATTT TAAAAGC TCACT GCTTTTA TGTTTGTTTTTTCTG coxB 674601 - 673654 - | cytochrome c oxidase polypeptide II tagD 675239 - 674685 - | glycerol-3-phosphate cytidyltransferase TagD TERM 647 675245 - 675284 + H 74 -6.8 -4.23781 | opp_overlap 675257, overlap 675278 GTCTAGGCATAATCT TTCTCTATATAAGTTAAT GAAA ATTAACTTATATAAAAAA TTTAATTTTAATCAA nlpD2 675424 - 676788 + | membrane proteins related to metalloendopeptidase TERM 648 676822 - 676850 + G 70 -8.1 -3.15579 | GAGCGAAGCATTGTT GCAATCTCGTGCC AAA GTCCTGAGATTGC TTCGTCGAAACTTGC TERM 649 677155 - 677165 + G 87 -5.4 -5.53991 | opp_overlap 677153 677155 TGAATATTATCAATA TAGC AAT GCTA TTTTTTTAATAACTA lspA 676817 - 677533 + | lipoprotein signal peptidase TERM 650 677654 - 677642 - f 72 -3.5 -5.15969 | opp_overlap 677642, overlap 677645 GTCCAAGTTAAAAAA TTATA AAA TATAA TTTTAATTAAAGGTG RF_0633 677676 - 677924 + | hypothetical protein murD 678060 - 679409 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 651 679445 - 679418 - f 82 -9.9 -3.24 | opp_overlap 679410, overlap 679422 AAAGTAATTGACGAA GCAATCTCGGG CGAATT CCTGAGATTGC CACGCGGTCTTCGAC TERM 652 680266 - 680277 + G 71 -2.2 -5.32396 | GCAGGTACTACCCGA TTCG CATA CGGA TTTTATTTTTGCTGT ftsW 679469 - 680623 + | cell division protein FtsW TERM 653 680912 - 680932 + G 72 -2.5 -5.42259 | overlap 680914 GCGGTTATCCTGTTA TAGCTCCAA TGT TTGCAGCAA TTTTTTTAAGAGTAC TERM 654 681017 - 680995 - g 70 -6.4 -4.32607 | opp_overlap 681010 GGAAAAGTTAATAAA TTTTTTGCAA GCT TTGCTAAAAA GATAGCTATTTCTTA TERM 655 681149 - 681114 - g 100 -17.8 -4.08571 | overlap 681118 GGAGAATATTAGAAA TGTATGTCATTCCCGC GAAA GCGGGAATGACATAAA GAGAAGCAAAGATAA TERM 656 681145 - 681118 - g 100 -18.6 -2.73268 | overlap 681114 AATATTAGAAATGTA TGTCATTCCCGC GAAA GCGGGAATGACA TAAAGAGAAGCAAAG murG 680620 - 681702 + | N-acetylglucosaminyl transferase RF_0637 681951 - 682607 + | hypothetical protein TERM 657 682703 - 682689 - f 91 -4.3 -6.04419 | opp_overlap 682689 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG RF_0638 683055 - 683519 + | hypothetical protein TERM 658 683554 - 683590 + T 100 -11.3 -4.87665 | opp_overlap 683564, overlap 683557 683564 TTTGTCCACGGGGTC TAGTTAAAAATACTAAT ATT ATTAGTATTTTTAATTG TTTTTATGGATACCG TERM 659 683557 - 683587 + T 100 -13 -4.5448 | opp_overlap 683564, overlap 683554 683564 GTCCACGGGGTCTAG TTAAAAATACTAAT ATT ATTAGTATTTTTAA TTGTTTTTATGGATA TERM 660 683564 - 683580 + T 85 -6.7 -5.10004 | opp_overlap 683564, overlap 683557 683554 GGGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAATTGTTTTT TERM 661 683580 - 683564 - T 79 -6.7 -4.65895 | opp_overlap 683564 683557 683554 GGGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAATTGTTTTT RF_0639 685118 - 683658 - | RND family efflux transporter RF_0640 685813 - 685088 - | RND family efflux transporter RF_0641 686826 - 685831 - | RND family efflux transporter TERM 662 686910 - 686879 - R 74 -6.9 -4.33182 | opp_overlap 686886, overlap 686876 686880 686886 GGATCCAGAAAATAA CTAAAAATACTAA TAATAT TTAGTATTTTTAA CTGGATTCCGTGAAT TERM 663 686909 - 686880 - R 71 -8.2 -3.19186 | opp_overlap 686886, overlap 686879 686876 686886 GATCCAGAAAATAAC TAAAAATACTAA TAATAT TTAGTATTTTTA ACTGGATTCCGTGAA mfp 688232 - 686973 - | RND family transporter membrane-fusion protein TERM 664 688281 - 688308 + r 73 -9.2 -2.80113 | gap 1, opp_overlap 688276 GATACCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA RF_0643 689780 - 688389 - | RND efflux system, outer membrane protein RF_0644 691007 - 689991 - | glycosyltransferase TERM 665 690103 - 690121 + g 71 -3.2 -5.31877 | overlap 690101 TTTGCTTTTATAGGG TTATCTAT TAG ATAGACAA TTTTTTCTGCTAAAT dapF 691091 - 691903 + | diaminopimelate epimerase RF_0646 691878 - 693143 + | MiaB-like tRNA modifying enzyme TERM 666 693131 - 693151 + F 74 -9.7 -2.70932 | opp_overlap 693129 693128 693147 GAATAATATGAAGTG CGAGTTGGT TTA ACCACCTCG TCATTGCGAGGAGAG TERM 667 693313 - 693344 + F 76 -9.5 -3.05844 | gap 1 CTGTATTTTTTATTA CTG-GATCCCGTGG ACAAG CCACGGGATGACAG TGTTAACATAAAACA pheS 693373 - 694422 + | phenylalanyl-tRNA synthetase subunit alpha TERM 668 695114 - 695100 - g 70 -4.2 -5.08015 | AATTTAAAAAATAAA CCAAGC CCT GATTGG TTACGGAAATTATTA TERM 669 695336 - 695301 - g 88 -6.8 -5.22006 | gap 1, opp_overlap 695307, overlap 695303 695305 TCAGGACAACAAAAA GAGATTGCCGCGGCTGC TTT GCAGCCTCG-CAATGAC GTAGCTAAATTCCAC TERM 670 695334 - 695303 - g 83 -8 -4.2328 | gap 1, opp_overlap 695307, overlap 695301 695305 AGGACAACAAAAAGA GATTGCCGCGGCTGC TTT GCAGCCTCG-CAATG ACGTAGCTAAATTCC TERM 671 695332 - 695305 - g 87 -10.6 -3.69481 | gap 1, opp_overlap 695307, overlap 695303 695301 GACAACAAAAAGAGA TTGCCGCGGCTGC TTT GCAGCCTCG-CAA TGACGTAGCTAAATT pheT 694419 - 696875 + | phenylalanyl-tRNA synthetase subunit beta dnaN 696880 - 698019 + | DNA polymerase III subunit beta RF_0650 698212 - 698718 + | hypothetical protein TERM 672 701076 - 701100 + G 74 -8.7 -3.33214 | opp_overlap 701082, overlap 701074 701081 AAGAAGTGGTTGATG TTAAAACCGTA AGA TACGGCTTTAA TGTTATAGTTCAGCT TERM 673 701094 - 701082 - g 77 -7.7 -4.13767 | opp_overlap 701081 701076 701074 TGGTTGATGTTAAAA CCGTA AGA TACGG CTTTAATGTTATAGT TERM 674 701333 - 701314 - g 74 -5.8 -4.56883 | CGAAGATGAAATAAA GCAAATTA CCGT CAATTTGC CAAAAGTACAAAAAT leuS 698909 - 701416 + | leucyl-tRNA synthetase RF_0652 702119 - 701601 - | hypothetical protein rnd2 702888 - 702277 - | ribonuclease D RF_0654 703418 - 703095 - | hypothetical protein TERM 675 703520 - 703493 - R 73 -9.2 -2.80443 | gap 1, overlap 703469 GGATATTTGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTAGAGTAT cdsA 704210 - 703527 - | phosphatidate cytidylyltransferase TERM 676 703726 - 703710 - GR 71 -6.7 -4.10934 | opp_overlap 703720 ACAACTAATTATAAA CAAATAA ATT TTATTTG AAAAATAGTAATTTT TERM 677 703843 - 703859 + gr 89 -10.9 -3.66666 | TTAGGACTGATTTTT GGAGCAA GTT TTGCTCC TTTAAAAGTTTTGCC uppS 704877 - 704170 - | undecaprenyl pyrophosphate synthetase envZ 706304 - 704991 - | osmolarity sensor protein EnvZ ompR 706959 - 706279 - | PetR protein TERM 678 707084 - 707100 + H 71 -8.1 -3.31144 | overlap 707087 TGAGATTGCTTCGCC GAATTAC TAC GTAATTC TTCTCGCAATGACGG ilvE 707170 - 708042 + | branched-chain amino acid aminotransferase dapA 708190 - 709074 + | dihydrodipicolinate synthase smpB 709071 - 709529 + | SsrA-binding protein TERM 679 709575 - 709559 - f 71 -8.1 -3.31144 | overlap 709562 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCTAG dsbA 709684 - 710478 + | Thiol:disulfide interchange protein DsbA TERM 680 710562 - 710576 + T 91 -4.3 -6.04419 | opp_overlap 710562, overlap 710555 CAATCCAGTAAAAAA TGCTA ATTTA TAGCA TTTTTTTATTATTTT TERM 681 710576 - 710562 - T 77 -4.3 -5.18357 | opp_overlap 710562 710555 CAATCCAGTAAAAAA TGCTA ATTTA TAGCA TTTTTTTATTATTTT RF_0663 711078 - 710644 - | hypothetical protein sucD 712644 - 711766 - | succinyl-CoA synthetase subunit alpha sucC 714018 - 712858 - | succinyl-CoA synthetase subunit beta RF_0666 714858 - 714256 - | hypothetical protein TERM 682 714487 - 714475 - G 84 -6.2 -5.29782 | GATAGTCATAAAAAA GCCG CTTAT CGGC ATTAACAACATTAAA RF_0667 716997 - 714961 - | acylamino-acid-releasing protein TERM 683 716167 - 716178 + g 76 -7.2 -4.28254 | opp_overlap 716167 ATGAACTGTAAATAA GCCG ATAT CGGC TTTTGCATCTTCGGC TERM 684 716178 - 716167 - G 74 -7.2 -3.97019 | opp_overlap 716167 ATGAACTGTAAATAA GCCG ATAT CGGC TTTTGCATCTTCGGC TERM 685 716480 - 716494 + g 74 -7.2 -4.15066 | TAAATTAATTCTTTT TCTAGA GTA TCTAGA TTTAATTTGTAAATA RF_0668 717763 - 717128 - | hypothetical protein TERM 686 717340 - 717324 - G 77 -2.9 -5.55698 | opp_overlap 717325, overlap 717325 GATAAGTCAAAAAAA TCACCAT AGG ACGGTGT TATTTTTTCAAATTC rbfA 718458 - 718096 - | ribosome-binding factor A RF_0670 718887 - 718462 - | hypothetical protein TERM 687 718602 - 718624 + g 71 -8 -3.18634 | opp_overlap 718602, overlap 718600 718598 718619 AAGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAATTTTGTTAAA TERM 688 718624 - 718602 - G 85 -8 -4.731 | opp_overlap 718602 718600 718598 718619 AAGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAATTTTGTTAAA RF_0671 719069 - 719590 + | hypothetical protein recR 719650 - 720273 + | recombination protein RecR RF_0674 720895 - 720572 - | hypothetical protein RF_0673 720357 - 720635 + | hypothetical protein TERM 689 720906 - 720924 + Tr 85 -9 -4.08692 | overlap 720909 ATCACCAACAAGCGG TAACCATA AAA TATGGTTA TTTTCAGAAAAGTTA TERM 690 720909 - 720921 + Tr 70 -6.3 -4.17048 | overlap 720906 ACCAACAAGCGGTAA CCATA AAA TATGG TTATTTTCAGAAAAG TERM 691 720958 - 721003 + Tr 85 -9.3 -4.09805 | opp_overlap 720966 720969, overlap 720962 720966 GAAGACTTTTTTGAT TTCATATATAATGCCTAGTTA TTTT TAACAAGGCATTATACATTAA TTTAATTCTTAGTCA TERM 692 720962 - 720999 + Tr 86 -10.1 -3.65261 | opp_overlap 720966 720969, overlap 720958 720966 ACTTTTTTGATTTCA TATATAATGCCTAGTTA TTTT TAACAAGGCATTATACA TTAATTTAATTCTTA TERM 693 720966 - 720995 + Tr 82 -10.9 -2.64536 | opp_overlap 720966 720969, overlap 720962 720958 TTTTGATTTCATATA TAATGCCTAGTTA TTTT TAACAAGGCATTA TACATTAATTTAATT TERM 694 720995 - 720966 - TR 83 -10.9 -2.89564 | opp_overlap 720966 720962 720958, overlap 720969 TTTTGATTTCATATA TAATGCCTAGTTA TTTT TAACAAGGCATTA TACATTAATTTAATT TERM 695 720992 - 720969 - TR 75 -8.2 -3.59698 | opp_overlap 720966 720962 720958, overlap 720966 TGATTTCATATATAA TGCCTAGTTA TTTT TAACAAGGCA TTATACATTAATTTA TERM 696 721149 - 721113 - TR 83 -6.9 -4.87665 | opp_overlap 721123, overlap 721116 721117 721123 CGGTATCCAGAAAAA TAACTAAAAATATCAAT ATT ATTGATATTTTTAACTG GATCCCGTGAATAAA TERM 697 721146 - 721116 - TR 100 -10.8 -4.5448 | opp_overlap 721123, overlap 721113 721117 721123 TATCCAGAAAAATAA CTAAAAATATCAAT ATT ATTGATATTTTTAA CTGGATCCCGTGAAT TERM 698 721145 - 721117 - TR 89 -12.1 -3.31603 | opp_overlap 721123, overlap 721116 721113 721123 ATCCAGAAAAATAAC TAAAAATATCAAT ATT ATTGATATTTTTA ACTGGATCCCGTGAA TERM 699 721139 - 721123 - TR 85 -6.7 -5.10004 | opp_overlap 721123, overlap 721117 721116 721113 AAAAATAACTAAAAA TATCAAT ATT ATTGATA TTTTTAACTGGATCC TERM 700 721123 - 721139 + Tr 79 -6.7 -4.67353 | opp_overlap 721117 721116 721113 721123 AAAAATAACTAAAAA TATCAAT ATT ATTGATA TTTTTAACTGGATCC ppnK 721984 - 721217 - | inorganic polyphosphate/ATP-NAD kinase TERM 701 721980 - 721992 + g 75 -4.9 -5.10526 | GCTATTTTATTTATA TTCAT TAT ATGAA TTTCTTTTTTAATAT TERM 702 722450 - 722438 - g 72 -2.7 -5.36364 | CTAAAAATATAAAAA TTCAC GAA GTAAA ACCGGGTAGTAAAAT TERM 703 723523 - 723505 - g 83 -4.5 -5.5604 | GTAATTAATAAAAAA GGGTTGC TTGTT GCAAACC CAATGCTGTCTATGC RF_0676 722071 - 723753 + | hypothetical protein gpsA 723908 - 724873 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 704 724961 - 724977 + T 71 -8.1 -3.31144 | overlap 724964 CGAGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGG RF_0678 725479 - 725021 - | hypothetical protein RF_0679 725627 - 726556 + | permease RF_0680 726615 - 727487 + | hydrolase or acyltransferase TERM 705 728360 - 728349 - g 74 -5.8 -4.62475 | AGCGATAAACCAAAA TCCG TTAC CGGA GTTAAAATTCAAAAT trxB1 727707 - 728639 + | thioredoxin reductase TERM 706 729185 - 729174 - g 73 -4.4 -4.98103 | CAATAAAACATAAAA TGGA TGAA TCCA AACTCGAGACACTAC RF_0682 728762 - 729658 + | hypothetical protein RF_0683 729716 - 730300 + | hypothetical protein gabD 730466 - 731737 + | succinate semialdehyde dehydrogenase TERM 707 731801 - 731783 - f 85 -10.4 -3.53811 | CCCATTGCCCGGAAA TGCAAAAG CAC CTTTTGCA GGGCGTAAAGCTTCA TERM 708 732027 - 731994 - f 82 -7.6 -4.35405 | opp_overlap 731998, overlap 731998 GAAAAAAAGTATAAA TACAGCAAGCTTTT GAAATT AAAAGCTCGCTTTA TGCTGGATTCCTGCT TERM 709 731998 - 732023 + F 71 -6.9 -3.99405 | opp_overlap 731998 731994 AAAAGTATAAATACA GCAAGCTTTTG AAAT TAAAAGCTCGC TTTATGCTGGATTCC TERM 710 732023 - 731998 - f 73 -8.4 -3.40925 | opp_overlap 731998, overlap 731994 AAAAGTATAAATACA GCAAGCTTTT GAAATT AAAAGCTCGC TTTATGCTGGATTCC RF_0685 732138 - 732500 + | hypothetical protein lgtD 732490 - 733335 + | glycosyltransferase TERM 711 733443 - 733416 - f 77 -9.2 -3.24365 | gap 1, overlap 733414 GGATACTTGACAAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTCGTTGCT TERM 712 733590 - 733566 - g 78 -5.7 -4.90906 | opp_overlap 733561 733566 CCACAACAGCAAAAA GCAGTTCTTCA TAC TAAAGGACCGC TTTTATTGCTTGCAG TERM 713 735037 - 735022 - g 85 -4.7 -5.64873 | overlap 735033 TTCAAGAAGAAAAAA CCGAA GAAGCA TTCGG TAGAATCGAAAATAT uvrD 733515 - 735479 + | DNA helicase II RF_0688 735570 - 736886 + | hypothetical protein RF_0689 736974 - 737522 + | hypothetical protein TERM 714 737741 - 737731 - f 75 -2.6 -5.69473 | TAGATTAGAAAAAAA TAAT AAA ATTA GTAAGCAATTAGAAG RF_0690 737971 - 738327 + | hypothetical protein TERM 715 738396 - 738423 + T 73 -9.2 -2.80443 | gap 1, opp_overlap 738391 738390, overlap 738420 GATACCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCGTCAAATATCC tdcB 739494 - 738493 - | threonine dehydratase lon 739580 - 741916 + | ATP-dependent protease La TERM 716 742139 - 742158 + F 72 -8.6 -3.07935 | opp_overlap 742129 742139 742136 742134 AACCATGCAATAGTA CCGCAATC TTTC GATTGTGG TTCAATCCATAAAAT TERM 717 745701 - 745678 - g 78 -6.8 -4.43681 | gap 1 GAGTTAATAGTAAAA GGT-GTAACCG GCT CAGTTACGACC TCTGCAAATAATCAA TERM 718 750408 - 750445 + G 100 -10.5 -4.76041 | overlap 750410 AGGAGGTGGCTCCGG TGGAGGCGGCAATTCCG GCGG CGGTGGTGCCGTCTCTA TTTTTGATCCATCTC TERM 719 750410 - 750443 + G 93 -10.9 -3.99327 | overlap 750408 GAGGTGGCTCCGGTG GAGGCGGCAATTCCG GCGG CGGTGGTGCCGTCTC TATTTTTGATCCATC sca3 742351 - 751719 + | cell surface antigen Sca3 RF_0694 752069 - 752485 + | hypothetical protein TERM 720 752513 - 752536 + T 74 -3.1 -5.34055 | overlap 752516 TAGCCATATGCAGGA GGGTAGGGC AAATAG GTCCTATTC TTTTTTAATCTTTCT TERM 721 752590 - 752578 - T 77 -7.7 -4.00468 | opp_overlap 752589, overlap 752589 AGTATAATTCAGAAA GCTTG ATA CAAGC GAATTTTGCAAGATT RF_0695 753402 - 752794 - | hypothetical protein TERM 722 754573 - 754602 + H 71 -6.7 -4.15044 | gap 1, overlap 754573 TCACTATTAGTTGAA G-CCTTGAAAATTA TTA TAATTTTTAAGGAC TTTGTTAAAAAAGAA RF_0696 754682 - 754990 + | hypothetical protein TERM 723 755083 - 755043 - f 100 -23.1 -4.33928 | opp_overlap 755043 TACTCTAAATATAAA TTAATTGTATAGGTGTTAC TTA GTAACACCTATACAATTAA TTATTTCAGATTATA TERM 724 755043 - 755083 + F 100 -23.1 -3.97689 | opp_overlap 755043 TACTCTAAATATAAA TTAATTGTATAGGTGTTAC TTA GTAACACCTATACAATTAA TTATTTCAGATTATA TERM 725 755643 - 755664 + G 74 -6.7 -4.21631 | CGTATCAATATAGTT TATTATCGT AAAG ACGGTAATA TTTCTTGGGTAGATT yhbH 755109 - 755687 + | sigma(54) modulation protein paaY 755687 - 756196 + | carbonic anhydrase folD 757226 - 756333 - | methylenetetrahydrofolate dehydrogenase trxB2 758360 - 757353 - | thioredoxin reductase RF_0701 758837 - 758412 - | toxin of toxin-antitoxin system TERM 726 758442 - 758456 + g 71 -8.6 -2.83261 | overlap 758441 TTTAATATGTCCTAA CTTAGC CCA GCTAAG AATTTTTTGATCTCT RF_0702 759054 - 758824 - | antitoxin of toxin-antitoxin system Phd RF_0703 759261 - 759761 + | hypothetical protein RF_0704 759766 - 760203 + | hypothetical protein RF_0705 760315 - 761169 + | P pilus assembly protein FimD RF_0706 761214 - 762746 + | P pilus assembly protein FimD TERM 727 762828 - 762864 + G 71 -7.9 -3.54676 | opp_overlap 762832 762836 AATTGAAAATTTTGA CGAAGCAATCTCATGCC AAA GTCCTGAGATTGCCACG TTCCTTTCAGTCGCT TERM 728 762860 - 762832 - g 83 -10.3 -3.18429 | opp_overlap 762828, overlap 762836 GAAAATTTTGACGAA GCAATCTCATGCC AAA GTCCTGAGATTGC CACGTTCCTTTCAGT RF_0707 762737 - 763318 + | hypothetical protein RF_0708 763715 - 764383 + | chitin binding domain-containing protein TERM 729 764491 - 764455 - f 74 -5.4 -4.84359 | opp_overlap 764465, overlap 764465 CTAGGTCCATAAAAA CAACAAAAAATACTAA TAATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 730 764481 - 764465 - f 86 -3.8 -5.80727 | opp_overlap 764465, overlap 764455 AAAAACAACAAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATCC TERM 731 765225 - 765237 + G 80 -7.7 -4.18934 | TAAAGGTCATTCATC CGGTA TTA TACCG TTTATTAAAGTAATG TERM 732 765931 - 765919 - g 71 -7.7 -3.47392 | opp_overlap 765919, overlap 765917 CAAATGAAAAAAGTA CCGAT AGA ATCGG TTATGGCAAAAGTTT TERM 733 766326 - 766314 - g 70 -6.3 -4.27297 | overlap 766306 766312 CGAAGAAGAAAAACA GGTTT TCA AAACC GCTTACGAAATTGAT nrdA 764806 - 766629 + | ribonucleotide-diphosphate reductase subunit alpha nrdF 766795 - 767778 + | ribonucleotide-diphosphate reductase subunit beta TERM 734 768051 - 768038 - g 74 -6.7 -4.29326 | TCTAAAGCTAATAAA GCACT AAAG AGTGC AATTAAGGACTTATC TERM 735 770143 - 770131 - g 79 -4.9 -5.20735 | CGAAGAAAAAAGAAA TTTAC TTA GTAAA AAAGAATTTGCTCAA RF_0711 767966 - 770815 + | hypothetical protein TERM 736 771623 - 771611 - g 70 -4.1 -4.96762 | GATATATTACAAAAA CCTCA GGG TAAGG ATACATATGCAAAAG RF_0712 771038 - 772294 + | hypothetical protein RF_0713 772373 - 772951 + | hypothetical protein TERM 737 773020 - 773035 + T 90 -4.8 -5.8187 | opp_overlap 773020, overlap 773012 773013 ATCCATGCTAAAAAA TCTTTA GTTT TAAAGA TTTTTTTATTAGATA TERM 738 773035 - 773020 - T 75 -4.8 -5.05782 | opp_overlap 773012 773020 773013 ATCCATGCTAAAAAA TCTTTA GTTT TAAAGA TTTTTTTATTAGATA TERM 739 773041 - 773051 + T 72 -2.6 -5.44119 | overlap 773013 GTTTTAAAGATTTTT TTAT TAG ATAA TTTTTTTCAAATAAA TERM 740 773082 - 773063 - T 73 -8 -3.54638 | opp_overlap 773063 773067, overlap 773067 ATAATTTTTTTCAAA TAAAGCTT CAAA AAGCTTTA TTTGAGCGGATTCCT TERM 741 773063 - 773082 + T 73 -8 -3.55801 | opp_overlap 773063 773067, overlap 773067 ATAATTTTTTTCAAA TAAAGCTT CAAA AAGCTTTA TTTGAGCGGATTCCT miaA 774067 - 773138 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 742 774216 - 774230 + r 93 -11.4 -3.57144 | TGAGATTGCTTCGTC GACGCC TAT GGCGTC TTTCGCAATGACGAA TERM 743 774263 - 774251 - R 75 -2.6 -5.58074 | CAATGACGAAAAAAA CCGC CCCAT GCGA CAACACCTCGCAGGA RF_0715 774621 - 774280 - | hypothetical protein exoC 776142 - 774700 - | phosphomannomutase abcT2 777015 - 776284 - | ABC transporter ATP-binding protein RF_0718 777613 - 777176 - | hypothetical protein RF_0719 778178 - 777579 - | hypothetical protein kpsF 779143 - 778184 - | KpsF protein TERM 744 779218 - 779198 - R 83 -11.2 -2.8789 | overlap 779200 TTAAATATTATTAGA TACCGCGA TCAAG TCGCGGTA TGACACCCGATATAC TERM 745 779216 - 779200 - R 75 -9.4 -2.98304 | overlap 779198 AAATATTATTAGATA CCGCGA TCAAG TCGCGG TATGACACCCGATAT pnp 781487 - 779244 - | polynucleotide phosphorylase/polyadenylase TERM 746 780962 - 780973 + g 70 -4.4 -4.81083 | opp_overlap 780962 CTGCAACTACTAAAT CAAG CTGA CTTG TTTTTAATAATTCAA TERM 747 781260 - 781270 + g 71 -6.8 -4.11394 | opp_overlap 781260 CTCACGTTTAAAAAA TCCC CCG GGGA TTTTACCGGTAGCAT TERM 748 781270 - 781260 - G 85 -6.8 -5.03314 | opp_overlap 781260 CTCACGTTTAAAAAA TCCC CCG GGGA TTTTACCGGTAGCAT rpsO 781904 - 781629 - | 30S ribosomal protein S15 truB 782996 - 781926 - | tRNA pseudouridine synthase B TERM 749 782276 - 782289 + g 74 -5.3 -4.84363 | CTATCTTTATGCTTT TTTCC TCTA GGAAA TTTTTGGTAATTTCG TERM 750 782768 - 782778 + g 71 -6.8 -3.97636 | TAGCATCAATTAGCA GCTG TAT CAGC TTTGTAGCTTCACCT TERM 751 783111 - 783147 + H 100 -12.7 -4.87665 | opp_overlap 783121, overlap 783121 TTTATTCACGGGATC CAGTTAAAAATATCAAT ATT ATTGATATTTTTAGTTG TTTTTCTGGATACCG TERM 752 783137 - 783121 - H 79 -6.7 -4.67353 | opp_overlap 783111 783121 GGATCCAGTTAAAAA TATCAAT ATT ATTGATA TTTTTAGTTGTTTTT TERM 753 783121 - 783137 + H 85 -6.7 -5.10004 | opp_overlap 783121, overlap 783111 GGATCCAGTTAAAAA TATCAAT ATT ATTGATA TTTTTAGTTGTTTTT TERM 754 783297 - 783324 + H 72 -7.2 -3.88603 | opp_overlap 783304, overlap 783304 ACAAAGCAATCCAGT AAAAAAATGCTA ATTT TAGCATTTTTTA TTAATTTTTCTGGAT TERM 755 783317 - 783304 - H 87 -5.3 -5.54894 | opp_overlap 783297 783304 AATCCAGTAAAAAAA TGCTA ATTT TAGCA TTTTTTATTAATTTT TERM 756 783304 - 783317 + H 87 -5.3 -5.61689 | opp_overlap 783304, overlap 783297 AATCCAGTAAAAAAA TGCTA ATTT TAGCA TTTTTTATTAATTTT tlc4 783488 - 785023 + | ADP,ATP carrier protein TERM 757 785095 - 785141 + F 82 -8.7 -4.02424 | opp_overlap 785100 785101, overlap 785096 TAACACAAACTGTGA ATTAATGTTGTCATCCCGTGG CTTGA CCACGGGGTGACAGCGAAAAA TTTGTGCTAATTAAT TERM 758 785096 - 785140 + F 90 -12.2 -3.00731 | opp_overlap 785100 785101, overlap 785095 AACACAAACTGTGAA TTAATGTTGTCATCCCGTGG CTTGA CCACGGGGTGACAGCGAAAA ATTTGTGCTAATTAA TERM 759 785136 - 785100 - f 88 -11.5 -3.36581 | opp_overlap 785096 785095, overlap 785101 CAAACTGTGAATTAA TGTTGTCATCCCGTGGC TTG ACCACGGGGTGACAGCG AAAAATTTGTGCTAA TERM 760 785135 - 785101 - f 100 -15 -2.61467 | opp_overlap 785096 785095, overlap 785100 AAACTGTGAATTAAT GTTGTCATCCCGTGGC TTG ACCACGGGGTGACAGC GAAAAATTTGTGCTA TERM 761 785263 - 785245 - g 95 -3.8 -6.11243 | overlap 785248 ACCGAAGAAAAAAAA CAAGAGCA AGC TGTTCCTG CTCAACCTATTAGTA TERM 762 785266 - 785248 - g 85 -6.7 -5.08831 | overlap 785245 GAAGAAAAAAAACAA GAGCAAG CTGTT CCTGCTC AACCTATTAGTAGTA TERM 763 787955 - 787945 - g 85 -3.2 -6.09888 | CTTGAAGAAAAAAAA GCTG AAT CAAC AAAAAAAGTAGATGA sca4 785179 - 788298 + | cell surface antigen TERM 764 788371 - 788395 + T 100 -11.7 -4.27519 | opp_overlap 788371 GGGAATCTAGTAAAA CATATAAAAAC TTA GTTTTTATATG TTTATGTTATCAAAT TERM 765 788395 - 788371 - T 100 -11.7 -4.30978 | opp_overlap 788371 GGGAATCTAGTAAAA CATATAAAAAC TTA GTTTTTATATG TTTATGTTATCAAAT hipB 788904 - 788512 - | transcriptional regulator rbn 789429 - 790256 + | ribonuclease BN, putative glnA 791253 - 790420 - | glutamine synthetase RF_0729 791252 - 791974 + | hypothetical protein def2 792146 - 792697 + | polypeptide deformylase TERM 766 792925 - 792886 - f 75 -8.2 -3.7398 | opp_overlap 792887 792894 792898, overlap 792884 792894 TTTGAATTTAAAATA TGTTATAATTAACTAGTT AATT AACTAGTTAATTATATGA AAAACGCAATTACAG TERM 767 792917 - 792894 - f 80 -9.8 -3.39289 | opp_overlap 792887 792894 792898, overlap 792886 792884 TAAAATATGTTATAA TTAACTAGTT AATT AACTAGTTAA TTATATGAAAAACGC TERM 768 792894 - 792917 + F 80 -9.8 -3.48276 | opp_overlap 792894 792886 792884, overlap 792887 792898 TAAAATATGTTATAA TTAACTAGTT AATT AACTAGTTAA TTATATGAAAAACGC RF_0731 792922 - 793176 + | antitoxin of toxin-antitoxin system Phd RF_0732 793180 - 793584 + | toxin of toxin-antitoxin system addA 793884 - 793585 - | erythrocyte adducin alpha subunit TERM 769 794377 - 794327 - R 72 -8.5 -3.14344 | gap 1, opp_overlap 794326 794334 GAGTTGCGTTAGCAA CGACGCGGCAATCTCATGAAAT AATGATAA ACTTC-TGAGATTGCTTCGTCG AATTACTTTGTAATT TERM 770 794377 - 794393 + r 71 -8.1 -3.31144 | overlap 794326 794380 TGAGATTGCTTCGTC GAATTAC TTT GTAATTC TTCTCGCAATGACGG RF_0734 796114 - 794435 - | hypothetical protein TERM 771 796215 - 796228 + r 71 -5.3 -4.68424 | opp_overlap 796215 AAATAATTAAAAAAG TGCTA AAAT TAGCA TTTTTAACTGGATTG ppdK 798950 - 796314 - | pyruvate phosphate dikinase TERM 772 796437 - 796422 - G 73 -9 -2.96009 | GAAAAATTCTATAGA TGCAGG ATTG CCTGCA TGCTCCCCGCAAGCA TERM 773 797208 - 797224 + g 76 -3.7 -5.35224 | opp_overlap 797207, overlap 797211 AGGAGCAATAATCAT TTCCCTT ACT AAAGGAA TTTTATTTTTATCAA TERM 774 797894 - 797905 + g 72 -5.8 -4.42748 | opp_overlap 797894 797893 CGGCAATATTAATAG CAGC GATG GCTG TTCTTTTTGCAGTAC TERM 775 798143 - 798132 - G 70 -4.4 -4.75372 | opp_overlap 798132 AGCATTTATTAAAAA CTCT CCAA AGAG CTTTTTTTCTCCTGT TERM 776 799558 - 799540 - H 74 -7.4 -4.14392 | overlap 799544 CGGTAAGGGTGAAAA GGTACGGT AAG AGCGTACC GGTAAGTTGGTAACA RF_0736 800080 - 800748 + | glutathione S-transferase RF_0737 801166 - 800855 - | biotin-protein ligase RF_0738 801538 - 801338 - | biotin-protein ligase TERM 777 801734 - 801755 + G 70 -8.1 -3.14527 | overlap 801732 AAGCCTATATTTATT TCATTGCAA ACCG TTGCAGTGA TGTTCATCGGACTTA bioY2 801614 - 802186 + | BioY family protein folC 802409 - 803692 + | folylpolyglutamate synthase TERM 778 803767 - 803723 - f 74 -7.2 -3.9749 | gap 1, overlap 803731 ATTTACAATAGTAAA TTGA-CGAAGCAATCTCGGGA GAAT TCCTGAGATTGCCACGCTCAC TAACGTTCGCTCGCA TERM 779 803758 - 803731 - f 100 -12.8 -3.25802 | overlap 803723 TAGTAAATTGACGAA GCAATCTCGGGA GAAT TCCTGAGATTGC CACGCTCACTAACGT TERM 780 804126 - 804116 - g 85 -8.2 -4.67982 | TGGCATTCAATAAAA CCGC AGG GCGG AGGTAAGCCAAGCGG sodB 803783 - 804451 + | superoxide dismutase RF_0742 804456 - 804824 + | alpha-beta hydrolase family esterase RF_0743 804933 - 806045 + | alpha-beta hydrolase family esterase TERM 781 806445 - 806416 - g 86 -11.5 -2.66316 | gap 1, opp_overlap 806421, overlap 806413 CCGTCTATGATACTA TGTCATCCCGTGGC CCC GCCACGGGATT-CA ATCAATCAATAAACA TERM 782 806421 - 806441 + G 100 -16.9 -3.08133 | opp_overlap 806416 806413 TATGATACTATGTCA TCCCGTGGC CCC GCCACGGGA TTCAATCAATCAATA birA 806133 - 806936 + | biotin--protein ligase TERM 783 806954 - 806970 + F 71 -3.1 -5.14645 | opp_overlap 806954 AAAATATTACTAAAT TTAAATT GTA GATTTAA TTTTTGTTAACTTCT TERM 784 807567 - 807552 - g 71 -7.6 -3.38317 | ACCTACAAATGAAGA TGAGGT AATA ACCTCA GGAGATAATTATTGT RF_0745 807019 - 807594 + | hypothetical protein TERM 785 807724 - 807671 - f 100 -13.5 -3.07113 | opp_overlap 807680 807681, overlap 807681 GATGATGTCAGCTAA GAATACAAAATTACCCCCTGAGTAT CTAC ATACTAAGGGGATAAATTTATACTC CAATGCTATAATCTT TERM 786 807681 - 807714 + F 75 -9.7 -2.97951 | opp_overlap 807671 807681, overlap 807680 GCTAAGAATACAAAA TTACCCCCTGAGTAT CTAC ATACTAAGGGGATAA ATTTATACTCCAATG TERM 787 807714 - 807681 - f 100 -11.9 -4.79752 | opp_overlap 807681 807680, overlap 807671 GCTAAGAATACAAAA TTACCCCCTGAGTAT CTAC ATACTAAGGGGATAA ATTTATACTCCAATG RF_0746 807815 - 808210 + | hypothetical protein RF_0747 808331 - 809074 + | hypothetical protein TERM 788 809157 - 809174 + G 74 -7.1 -4.11692 | opp_overlap 809157 GGAAGGTTTAAGACA GCAAAAA ATAT TTTTTGC TTTTCACGATAAATG TERM 789 809290 - 809275 - g 80 -9 -3.7282 | opp_overlap 809275 809266 809277 TTACTTGATGAAGAA GAGGCA GTAT TGCCTC TATCTCAGCTTTATT TERM 790 809275 - 809290 + G 73 -9 -2.94595 | opp_overlap 809275, overlap 809266 809277 TTACTTGATGAAGAA GAGGCA GTAT TGCCTC TATCTCAGCTTTATT TERM 791 809579 - 809606 + G 100 -11.6 -3.96506 | overlap 809582 AGTATGGCATTTTTG TAATGTTGAATA TTCC TATTCAACATTA TTATCTTTTGAAATG TERM 792 809582 - 809603 + G 85 -8.9 -4.09656 | overlap 809579 ATGGCATTTTTGTAA TGTTGAATA TTCC TATTCAACA TTATTATCTTTTGAA RF_0748 809053 - 809661 + | hypothetical protein TERM 793 809811 - 809794 - f 77 -9.9 -2.6342 | overlap 809790 CTTTAAAGTAATGGA TTCCTGC TTTC GCAGGAA TGACATCGAACGTAT RF_0749 809940 - 811049 + | HK97 family phage prohead protease/phage major capsid protein RF_0750 811007 - 811417 + | HK97 family phage prohead protease/phage major capsid protein TERM 794 811492 - 811443 - f 100 -17.3 -3.09635 | opp_overlap 811472, overlap 811447 811472 ATTGCGAGGAGCGAA GCGACGTGGCAATCTCATGAAGT AGTA AATTCCTGAGATTGCCACGCCGG CATAAATGCCGGCTC TERM 795 811488 - 811447 - f 100 -17.5 -2.55544 | opp_overlap 811472, overlap 811443 811472 CGAGGAGCGAAGCGA CGTGGCAATCTCATGAAGT AGTA AATTCCTGAGATTGCCACG CCGGCATAAATGCCG TERM 796 811519 - 811472 - f 72 -7.1 -3.85704 | gap 2, opp_overlap 811472, overlap 811447 811443 TCATGAAGTAGTAAA TTCCTGAGATTGCCACGCCGGCA TAAA TGCCGGC-TCGCAATGAC-GGAA ATAATTTAACAAGGT RF_0751 811541 - 811741 + | hypothetical protein RF_0752 811870 - 812271 + | hypothetical protein RF_0753 812273 - 812665 + | nucleotidyltransferase substrate binding protein RF_0754 812652 - 812936 + | hypothetical protein RF_0755 812952 - 813551 + | hypothetical protein RF_0756 813567 - 813968 + | hypothetical protein RF_0757 814191 - 814481 + | hypothetical protein RF_0758 814485 - 814658 + | hypothetical protein RF_0759 814645 - 814977 + | hypothetical protein infC 815155 - 815598 + | translation initiation factor IF-3 TERM 797 816765 - 816748 - g 79 -9.9 -2.8355 | overlap 816747 AGATAATAAATTAAC CCCTGAA GAAT TTCAGGG CGGAGGGTTTACCAT pdhC 815786 - 817024 + | branched-chain alpha-keto acid dehydrogenase subunit E2 prfA 817195 - 818262 + | peptide chain release factor 1 TERM 798 819334 - 819353 + G 75 -5 -5.10933 | opp_overlap 819334 819332 GAGCTTAATGAAATA CCGAAATG TTAT CATTTAGG TTTTATTTTAGGTCC recJ 818476 - 820239 + | single-stranded-DNA-specific exonuclease RecJ RF_0764 820495 - 821811 + | putative methyltransferase TERM 799 821922 - 821906 - f 71 -8.1 -3.31144 | overlap 821909 CCGTCATTGCGAGAA GAATTAC GCA GTAATTC GACAAAGTAATCCAG TERM 800 821945 - 821959 + F 87 -4.3 -5.73672 | opp_overlap 821945 TAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTAATTATTT TERM 801 822011 - 821991 - f 73 -7.6 -3.65046 | opp_overlap 821979 821988 TCTGGATTGCAACAA TGCTTCGC TCCTC GCAAAGCA GTGTTGCGTGGATCG TERM 802 822110 - 822075 - f 93 -8.6 -4.83169 | opp_overlap 822085, overlap 822085 AGGGGTCTATAAAAA CAATAAAAAATACTAA TATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 803 822100 - 822085 - f 90 -4.8 -5.80727 | opp_overlap 822085, overlap 822075 AAAAACAATAAAAAA TACTAA TATT TTAGTA TTTTTAACTGGATCC TERM 804 823398 - 823382 - g 82 -9.5 -3.58522 | overlap 823380 AATGCACTACAAAGA CCGAAAA GAT TTTTCGG AGCAGCAAGAAATAT rho 822398 - 823774 + | transcription termination factor Rho TERM 805 824586 - 824573 - g 76 -3.7 -5.39221 | opp_overlap 824574, overlap 824574 AGAAGAAGTAAAAAA GCTCG CAGA CGGGC GAGTATATTCAGGTC sppA2 823905 - 824819 + | Signal peptide peptidase SppA TERM 806 825038 - 825014 - g 79 -7.4 -4.39696 | CCTGAAAGCAATAAA TTCTATAATA TTGTT TATTATAGAA TGCCTAAAAATTTAT himD 824822 - 825064 + | integration host factor beta-subunit TERM 807 825155 - 825169 + G 70 -7.2 -3.6106 | TATTTTTTCCATGGC TCTTCA TAT TGAAGA TTTAGAACTCTTCAA TERM 808 825422 - 825406 - g 71 -2.3 -5.37593 | overlap 825408 CTTTAAAGGAAAAAA TATCATC AAT AATGACA TATTTAGAAAAAGAA RF_0768 825072 - 825629 + | hypothetical protein TERM 809 825968 - 825945 - g 78 -9.7 -3.33261 | opp_overlap 825942 TCTTAATTTTGAGAA GTTAGCTCT TAAGAC AGAGCTAAC GACTTCTATATTTCC RF_0769 825901 - 826647 + | hypothetical protein cmk 826879 - 827538 + | cytidylate kinase TERM 810 828561 - 828543 - g 74 -3.8 -5.14965 | AGTTTGATGAAAAAA CCAAAAGA ATA TCACTTGG TATAAAACAACTTGA rpsA 827750 - 829456 + | 30S ribosomal protein S1 clpP 829699 - 830304 + | ATP-dependent Clp protease proteolytic subunit TERM 811 830469 - 830430 - f 100 -14.4 -5.41746 | overlap 830431 830432 AATTTTTTAAAAAAA TCTCGATGTCATTCCCGC ATAC GCGGGAATGACATGGAAC GAAAAATGTCCGGCA TERM 812 830468 - 830431 - f 100 -17.9 -3.83963 | overlap 830430 830432 ATTTTTTAAAAAAAT CTCGATGTCATTCCCGC ATAC GCGGGAATGACATGGAA CGAAAAATGTCCGGC TERM 813 830467 - 830432 - f 100 -19.2 -2.89655 | overlap 830431 830430 TTTTTTAAAAAAATC TCGATGTCATTCCCGC ATAC GCGGGAATGACATGGA ACGAAAAATGTCCGG RF_0773 830960 - 831454 + | transcription activator RF_0774 832276 - 831458 - | streptomycin 6-kinase TERM 814 831885 - 831899 + g 70 -7.1 -3.71848 | TGAATTTCTGGTATA GCTGC TCTGT GCAGC TTATTCATAACAGAA RF_0775 832291 - 832833 + | acetyltransferase RF_0776 832830 - 833315 + | acetyltransferase RF_0777 833495 - 834202 + | metal-dependent hydrolase RF_0778 834199 - 834966 + | hypothetical protein RF_0779 835156 - 835407 + | antitoxin of toxin-antitoxin system Phd RF_0780 835833 - 836513 + | hypothetical protein TERM 815 836730 - 836762 + F 70 -8 -3.11833 | opp_overlap 836728 836746 836749, overlap 836729 836728 836746 CTATTTTGAAGTATT TTTTAGCAAAAATT AATAA GATTTTTGCTGAAA TAGTTATTTATATTT RF_0781 836853 - 837095 + | hypothetical protein RF_0782 838084 - 837539 - | ankyrin repeat-containing protein RF_0783 838740 - 838093 - | ankyrin repeat-containing protein RF_0784 839515 - 838757 - | acetyltransferase TERM 816 839711 - 839687 - H 70 -4.4 -4.7878 | opp_overlap 839687 TATTGATAAAATAAA CCTAAAAAAA CAAGT TTTTTATAGG TTTTACTGGATTCCC TERM 817 839767 - 839751 - H 78 -5.9 -4.84492 | GGAATGACAATAAAA TTACCTT TTT AAGGCAA TACCAAATATATTTT fni 839828 - 840865 + | isopentenyl pyrophosphate isomerase traC 841760 - 840939 - | DNA primase TERM 818 841577 - 841593 + g 82 -8.7 -4.00443 | AATCCCATTTAGCTC CCAAGCG TTT TGCTTGG TCTTTTTCATGATAA TERM 819 841863 - 841875 + r 72 -3.5 -5.17576 | opp_overlap 841863 841855 841854, overlap 841855 841854 AATTAAGGGAAAAAA TATTT TTG AAATA TTTTTTACATTCATA TERM 820 841875 - 841863 - R 72 -3.5 -5.1848 | opp_overlap 841855 841854 841863, overlap 841855 841854 AATTAAGGGAAAAAA TATTT TTG AAATA TTTTTTACATTCATA TERM 821 841915 - 841931 + r 78 -9.5 -3.30418 | opp_overlap 841914 841910, overlap 841912 841912 TTAAATATAATTTAG CCATTTC TCC GAAATGG TATATTTACTCGCTC RF_0787 842434 - 842150 - | toxin of toxin-antitoxin system ParE RF_0788 842687 - 842427 - | antitoxin of toxin-antitoxin system Phd TERM 822 842618 - 842630 + g 73 -7.7 -3.737 | opp_overlap 842618 842617 TAATAATACTAATAG GCTCA GTT TGAGC TTTAATAAGCAATTC RF_0789 842942 - 842763 - | hypothetical protein RF_0790 843392 - 842952 - | hypothetical protein TERM 823 843506 - 843516 + H 78 -6.8 -4.53705 | TGATGCACCCTTATG GCGT TAT ACGC TTTTCTCTAAACCTT RF_0791 843842 - 844510 + | hypothetical protein TERM 824 844772 - 844784 + T 74 -7.7 -3.92075 | TGTCTCGAAAAGTTC GCTTG TAT CAAGC TTTCTGAATGACGCT RF_0792 845065 - 844805 - | toxin of toxin-antitoxin system RF_0793 845687 - 845046 - | phage-associated protein RF_0794 846883 - 845852 - | hypothetical protein TERM 825 846639 - 846650 + g 73 -4.4 -5.06411 | ACGGGTAAAAACGCT TGCA TTAA TGCA TTTCTTTTATTTTCT RF_0795 847552 - 847412 - | rRNA methylase RF_0796 847961 - 847560 - | rRNA methylase RF_0797 848192 - 848043 - | hypothetical protein TERM 826 848303 - 848338 + r 82 -5 -5.50499 | CCTGACCACGGGATC CAGTTAAAAATATTAA AATA TTAGTATTTTTTATTG TTTTTTTGGATATCG glmU 849190 - 848444 - | UDP-N-acetylglucosamine pyrophosphorylase RF_0799 849945 - 849187 - | hypothetical protein TERM 827 849604 - 849625 + g 77 -4.3 -5.21236 | overlap 849605 TTTGGTAAAACCGGA ACGCACTTC AGCA GCAGTGCGG TTTTTATTATCGGTT TERM 828 849605 - 849624 + g 73 -7.8 -3.71115 | overlap 849604 TTGGTAAAACCGGAA CGCACTTC AGCA GCAGTGCG GTTTTTATTATCGGT rpmJ 850209 - 850084 - | 50S ribosomal protein L36 TERM 829 850302 - 850314 + H 76 -5.5 -5.09204 | opp_overlap 850302 TTTTAAAACAAAATA CCATG TTT CGTGG TTTTTATTGACATAT TERM 830 850374 - 850386 + H 84 -6.3 -5.1287 | opp_overlap 850372 850374 AAAAATTAAGAGATA CCATA TTT TATGG TTTTTTAAATATAAA RF_0801 850744 - 851394 + | hypothetical protein TERM 831 851401 - 851388 - f 77 -3.9 -5.5074 | overlap 851377 TAAGTTAATAAAAAA TTACT AAAT AGTAA TCAGTGAAGAATATA RF_0802 851719 - 852024 + | hypothetical protein mltE2 852133 - 852972 + | putative soluble lytic murein transglycosylase RF_0804 852978 - 853586 + | hypothetical protein RF_0805 853769 - 854104 + | hypothetical protein bioC 854175 - 855005 + | biotin synthesis protein BioC TERM 832 855132 - 855146 + F 91 -4.3 -6.04419 | opp_overlap 855132 CAATCCAGTAAAGAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT lpdA2 855267 - 856646 + | dihydrolipoamide dehydrogenase RF_0808 856871 - 857305 + | 5-formyltetrahydrofolate cyclo-ligase TERM 833 857727 - 857750 + T 100 -9 -5.56673 | opp_overlap 857726 TCTATTCATATATAG GCTACAAATT ATTT GATTTGTAGC TTTTTTCTTATAAGT rnd 858603 - 857758 - | ribonuclease D RF_0810 859491 - 858613 - | hypothetical protein TERM 834 859188 - 859198 + g 71 -6.8 -4.09455 | TATAATCAGATACCG GCTC TTT GAGC TTATTTACTGTTACT gcvT 859517 - 860365 + | glycine cleavage T-protein RF_0812 860494 - 860874 + | hypothetical protein RF_0813 860774 - 862213 + | hypothetical protein TERM 835 862321 - 862335 + F 91 -4.3 -6.04419 | opp_overlap 862321 GCAATCTAGTAAAAA TTCTG TAAGT CAGAA TTTTTTTATTATTTT TERM 836 862335 - 862321 - f 70 -4.3 -4.77157 | opp_overlap 862321 GCAATCTAGTAAAAA TTCTG TAAGT CAGAA TTTTTTTATTATTTT RF_0814 862557 - 864281 + | Na+/proline symporter and signal transduction histidine kinase RF_0815 864322 - 865296 + | Na+/proline symporter and signal transduction histidine kinase mccF2 865433 - 866338 + | microcin C7 resistance protein hemC 866335 - 867240 + | porphobilinogen deaminase TERM 837 867271 - 867238 - f 77 -8.3 -3.93638 | opp_overlap 867237 867236 867240 867249 AATCAACTGGATAAA TAGATATTTCGGGAG TATA CTCCTTAAATATCTA AATTTGAAAAGATTG RF_0818 867305 - 867580 + | hypothetical protein RF_0819 867690 - 868484 + | hypothetical protein RF_0820 869272 - 868646 - | hydrolase or acyltransferase RF_0821 869501 - 869232 - | hypothetical protein RF_0822 870001 - 870639 + | hypothetical protein RF_0823 870736 - 871056 + | hypothetical protein TERM 838 871345 - 871302 - T 81 -9.3 -3.8594 | opp_overlap 871306 871307, overlap 871305 871306 AAGATTCATACCAAA TAATCTTATATATTTCAAG GGAAAT CTTGAAATATATAAATTTA AATTACAAATCCGAA TERM 839 871342 - 871305 - T 71 -6.6 -4.05208 | opp_overlap 871306 871307, overlap 871302 871306 ATTCATACCAAATAA TCTTATATATTTCAAG GGAAAT CTTGAAATATATAAAT TTAAATTACAAATCC TERM 840 871341 - 871306 - T 81 -10.1 -3.02402 | opp_overlap 871306 871307, overlap 871305 871302 TTCATACCAAATAAT CTTATATATTTCAAG GGAAAT CTTGAAATATATAAA TTTAAATTACAAATC TERM 841 871306 - 871341 + T 77 -8.6 -3.75629 | opp_overlap 871306 871305 871302, overlap 871307 TTCATACCAAATAAT CTTATATATTTCAAGG GAAA TCTTGAAATATATAAA TTTAAATTACAAATC TERM 842 871307 - 871340 + T 88 -12.1 -2.85056 | opp_overlap 871306 871305 871302, overlap 871306 TCATACCAAATAATC TTATATATTTCAAGG GAAA TCTTGAAATATATAA ATTTAAATTACAAAT trpS 872335 - 871343 - | tryptophanyl-tRNA synthetase plsC 872531 - 873256 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase RF_0826 873309 - 873761 + | hypothetical protein TERM 843 873937 - 873902 - T 74 -9.8 -2.75081 | gap 1, overlap 873899 GACCGGTAAAACCCA CTATGTCACCCCGTGGC TTG ACCACGGGGTC-CATAA AAACAATAAAAAATA TERM 844 873976 - 873941 - T 93 -8.6 -4.82901 | opp_overlap 873951, overlap 873951 CGGGGTCCATAAAAA CAATAAAAAATACTAA TATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 845 873966 - 873951 - T 90 -4.8 -5.80727 | opp_overlap 873951, overlap 873941 AAAAACAATAAAAAA TACTAA TATT TTAGTA TTTTTAACTGGATCC relB2 874321 - 874049 - | DNA-damage-inducible protein J RF_0828 874464 - 875183 + | hypothetical protein TERM 846 875263 - 875249 - T 83 -4.3 -5.69023 | opp_overlap 875249, overlap 875241 AAAAGATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 847 875249 - 875263 + T 77 -4.3 -5.18357 | opp_overlap 875241 875249 AAAAGATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 848 875286 - 875302 + T 71 -8.1 -3.31144 | overlap 875289 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGG RF_0829 876508 - 875504 - | hypothetical protein RF_0830 877241 - 876501 - | hypothetical protein RF_0831 878079 - 877225 - | hypothetical protein lysE 878668 - 878027 - | lysine efflux permease TERM 849 878199 - 878183 - GR 81 -2.3 -5.95539 | overlap 878184 878186 TGCTAAAGAAAAAAA CCATATC CAA GATATAA ATATACAAGTTAAGG TERM 850 878317 - 878329 + gr 75 -4.9 -5.08824 | TTGACACCGATATAG CAAAT AAA ATTTG TTTTTTAGCTGAAAA RF_0833 879076 - 878669 - | hypothetical protein ampG1 880577 - 879252 - | AmpG-related permease RF_0835 881110 - 880583 - | hypothetical protein TERM 851 880800 - 880778 - G 100 -13.6 -3.47227 | opp_overlap 880778 GTGCAACCATGATAA TTGTTGTGAC ACT GTCACAACAA TTTCTTGATAAGGAT TERM 852 880778 - 880800 + g 100 -13.6 -4.2461 | opp_overlap 880778 GTGCAACCATGATAA TTGTTGTGAC ACT GTCACAACAA TTTCTTGATAAGGAT TERM 853 881094 - 881109 + g 70 -4 -5.00895 | TTATTAGGGATGAGC TGCTTT TTAG AAGGCA TTTTTATCTGATAAA TERM 854 882589 - 882564 - g 79 -2.5 -5.75599 | GAAACTATAAAAAAA TCAGAATGTGA CTTT TCCCTTCCTGA TCAAGATGTGTTAAA rfaJ 881280 - 882833 + | lipopolysaccharide 1,2-glucosyltransferase RfaJ tlc3 882902 - 884407 + | ADP,ATP carrier protein TERM 855 884421 - 884448 + F 73 -9.2 -2.80113 | gap 1, overlap 884445 AATGGCATCACGCCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA RF_0838 884506 - 886188 + | hypothetical protein TERM 856 886195 - 886222 + F 73 -9.2 -2.79302 | gap 1, opp_overlap 886212 CCTCGTTAGTCGTCA TTGCGA-GCGGTC GAA GACCGCGTGGCAA TCTCGTGAAAATAGT TERM 857 887235 - 887223 - g 70 -4.1 -4.9448 | AGTTATTAAATAAAA TTCCG GTT CAGAA TAGTTATAAAGATTA ispB 886310 - 887293 + | octaprenyl-diphosphate synthase pepP 889494 - 887689 - | aminopeptidase P TERM 858 888180 - 888190 + g 83 -6.8 -4.93296 | GTCCTTTAAGTACTT GCGT ATA ACGC TTTTTCTGCTCATCA TERM 859 888505 - 888517 + g 77 -9.1 -3.31144 | overlap 888497 TGAGATTGCTTCGTC GACGC TTT GCGTC TTCTCGCAATGACGA TERM 860 888996 - 888976 - G 100 -16.9 -2.88231 | overlap 888968 ATTATAATTACTAGA TCCCGCGGT CAA ACCGCGGGA TGACAATGCAACTTC potE 890953 - 889670 - | putrescine-ornithine antiporter TERM 861 891083 - 891071 - R 80 -9.1 -3.60296 | overlap 891075 TATCGTCATTGCAAA GCCAC GAA GTGGC TGCGGCAATCTAGAA TERM 862 891118 - 891165 + r 70 -8 -3.07487 | gap 1, opp_overlap 891113 891119, overlap 891117 AATAAAAGAATACTA ATTTAACGCGAATAGCGAATTAT TAC AAAATCCGCTATTCG-GTTAAAA CTTTTACGGATGTGC TERM 863 891164 - 891119 - R 100 -13.7 -3.54739 | gap 1, opp_overlap 891118 891117, overlap 891113 ATAAAAGAATACTAA TTTAACGCGAATAGCGAATTAT TAC AAAATCCGCTATTCG-GTTAAA ACTTTTACGGATGTG TERM 864 891434 - 891462 + r 76 -6.2 -4.55383 | opp_overlap 891441, overlap 891441 GACGAAGCAATCCAG TTAAAAATTCTG ATTTA CAGAATTTTTTA TTATTTTTCTAGATT TERM 865 891441 - 891455 + r 87 -4.3 -5.80727 | opp_overlap 891441, overlap 891434 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTATTATTTTT RF_0842 891751 - 891434 - | hypothetical protein iscA2 892156 - 891824 - | Iron-sulfur cluster assembly accessory protein iscU 892555 - 892160 - | scaffold protein TERM 866 892696 - 892706 + r 74 -6.8 -4.18668 | AATGACGATTTTTAG TGGG TAG CCCA TTTAATCTTTTTTAA iscS 893960 - 892692 - | cysteine desulfurase TERM 867 894048 - 894021 - R 73 -9.2 -2.80113 | gap 1, opp_overlap 894016, overlap 893987 893986 893983 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGGTTTGGGTAT spl1 895213 - 894104 - | NifS protein iscR 895629 - 895210 - | Iron-sulfur cluster assembly transcription factor IscR TERM 868 895878 - 895862 - R 71 -8.1 -3.3514 | overlap 895865 ATGGATACGCGAGAA GAATTAC ACA GTAATTC GACGAAGCAATCCAG TERM 869 895915 - 895901 - R 77 -4.3 -5.18357 | opp_overlap 895894 895901 CAATCCAGTAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTACTT TERM 870 895901 - 895915 + r 83 -4.3 -5.66868 | opp_overlap 895901, overlap 895894 CAATCCAGTAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTACTT RF_0848 897390 - 896020 - | hypothetical protein TERM 871 896396 - 896376 - G 83 -9.7 -3.78034 | opp_overlap 896378 TATTTATACCAATAA TACCCGCAG TTT CTGCCGGTA TTCCCCCTAAAAACG TERM 872 897367 - 897379 + g 73 -7.7 -3.60805 | AATATTAATTACTCT TCCTC TTA GAGGA TTTAAAATCACATAT RF_0849 898287 - 897415 - | hypothetical protein RF_0850 901049 - 899124 - | hypothetical protein TERM 873 899988 - 900022 + g 70 -4.5 -4.82162 | gap 1, opp_overlap 899989 899995, overlap 899989 899991 899995 TGCCGCTATTTTAAG AGC-TAAACCTTTGTT CAGG AATAAAGGTTTATGCG TTTTATATTGTTCTG TERM 874 899989 - 900021 + g 73 -8 -3.47671 | gap 1, opp_overlap 899989 899995, overlap 899988 899991 899995 GCCGCTATTTTAAGA GC-TAAACCTTTGTT CAGG AATAAAGGTTTATGC GTTTTATATTGTTCT TERM 875 899991 - 900018 + g 75 -9.4 -2.85564 | opp_overlap 899989 899995, overlap 899989 899988 899995 CGCTATTTTAAGAGC TAAACCTTTGTT CAGG AATAAAGGTTTA TGCGTTTTATATTGT RF_0851 901735 - 901319 - | hypothetical protein TERM 876 901851 - 901861 + G 86 -4 -5.86965 | AAGTAGCTCTTTCAA CATT TTA AATG TTTTTTTTGCTAAAT RF_0852 901771 - 902244 + | hypothetical protein RF_0853 904217 - 902241 - | NTPase TERM 877 904632 - 904619 - g 74 -3.9 -5.28942 | opp_overlap 904625 904631, overlap 904625 TATCCCAAATAAAAA TAGAA TTAT TTCTA ATATCATTATTTTAT TERM 878 905682 - 905694 + G 82 -6.3 -5.00616 | CTCACAGGATTTTTC GGTAA ATA TTACC TTTTTTACCAAGCAA TERM 879 905757 - 905767 + G 71 -3.2 -5.29716 | overlap 905753 GGTATTTTTACCAGC GTAG TTG CTGC TTTTTATTATCTTAA nuoN1 904536 - 905912 + | NADH dehydrogenase subunit N RF_0855 907647 - 905899 - | hypothetical protein TERM 880 906542 - 906552 + g 70 -4 -4.95806 | GTAGTAATTTTATTT CTTA ATT TAAG TTTTTGTCCTCCTTT TERM 881 907268 - 907257 - G 86 -7.2 -4.83615 | opp_overlap 907258 TAGCCCCCATAAAAA GCGG TCTA CCGC CGTCCTTTCTAAACC TERM 882 907724 - 907708 - R 76 -5.3 -4.99947 | TCCAATTAAATAAAA TATATAT ATT ATATATA CGAAGATCAACTTCA hemB 908830 - 907835 - | delta-aminolevulinic acid dehydratase TERM 883 907904 - 907888 - G 76 -8.7 -3.44487 | opp_overlap 907887, overlap 907880 907886 907890 CAGCATAGGTAAATA TACCGGT TGC ACCGGCA CGTTTAAAACTAATT TERM 884 907902 - 907890 - G 77 -9.1 -3.28866 | opp_overlap 907887, overlap 907880 907888 907886 GCATAGGTAAATATA CCGGT TGC ACCGG CACGTTTAAAACTAA RF_0857 909006 - 910037 + | hypothetical protein priA 911980 - 910034 - | primosome assembly protein PriA ubiX 912044 - 912619 + | aromatic acid decarboxylase TERM 885 912780 - 912828 + F 86 -6 -5.40474 | gap 1, overlap 912779 912783 TTTAAGCTTTGTTGC ATGGCTC-CTATGTCATTCCCGC CTAT GCGGGAATGACATAAAGTGCTTC TTTTTTTCAAACCAT TERM 886 912783 - 912825 + F 100 -14.3 -4.79949 | gap 1, overlap 912779 912780 AAGCTTTGTTGCATG GCTC-CTATGTCATTCCCGC CTAT GCGGGAATGACATAAAGTGC TTCTTTTTTTCAAAC dnaB 912865 - 914349 + | replicative DNA helicase TERM 887 914342 - 914330 - T 74 -6.3 -4.4017 | opp_overlap 914330 914337 914340 GTAATTTGGAGAAAA GAACT TTT AGTTC TAATTAAATCAGAAT TERM 888 914412 - 914457 + T 78 -9.1 -3.41581 | gap 1, opp_overlap 914407, overlap 914421 TGCGAGCGAACGTTA GTGAGCGTGGCAATCTCAGGAA TGT TTCCCGAGATTGCTTCG-TCAG TTACTTCGTAACTTC RF_0861 914665 - 914393 - | hypothetical protein TERM 889 914421 - 914449 + g 100 -14.7 -3.23598 | opp_overlap 914407, overlap 914412 ACGTTAGTGAGCGTG GCAATCTCAGGAA TGT TTCCCGAGATTGC TTCGTCAGTTACTTC TERM 890 914483 - 914494 + g 83 -5.8 -5.27709 | opp_overlap 914483, overlap 914481 ACTTCCTCGCAATGA CGAC GTTT GTCG TTTATTTTTTTCTAC RF_0862 915893 - 914694 - | putative to amino acid permeases TERM 891 916054 - 916082 + H 74 -7.8 -3.81256 | opp_overlap 916041 916038 916043 916048 916054 916051 916056 916060, overlap 916041 GATATAATATAATTA TATTAATAATTT ATGTC AAATTATTAATA TTGCTTTTTAAGGGT TERM 892 916082 - 916054 - H 71 -8.5 -2.98062 | opp_overlap 916041 916054, overlap 916041 916038 916043 916048 916051 916056 916060 GATATAATATAATTA TATTAATAATTTA TGT CAAATTATTAATA TTGCTTTTTAAGGGT rluA2 916186 - 916875 + | ribosomal large subunit pseudouridine synthase TERM 893 917935 - 917924 - g 81 -3 -5.75822 | opp_overlap 917924 TAGAAAGCAAAAAAA TCTT TCAG AAGA TTTAAATATAGTTCC RF_0864 916926 - 919805 + | hypothetical protein RF_0865 919810 - 920400 + | N6-adenine-specific methylase TERM 894 921739 - 921728 - g 83 -5.8 -5.24796 | GTGAGATAAGAAAAA CTGC AAAA GCAG AAACAAGAATAAAAG radA 920527 - 921867 + | DNA repair protein RadA TERM 895 922029 - 922012 - g 72 -7.1 -3.80114 | TAGTAATTGATCAAA TGCTTAA AGCT TTAAGCA TAGAATTTCCGGAAA RF_0867 921864 - 922199 + | hypothetical protein TERM 896 922303 - 922289 - f 75 -2.8 -5.52096 | AAATTTAATAAAAAA CTATGA ATA TCAAAG ATGTAGGAGTAATAA recO 922291 - 923004 + | DNA repair protein RecO TERM 897 923073 - 923044 - f 90 -12.5 -2.90075 | opp_overlap 923042, overlap 923046 TCTTTTTTAATGATA TACTTATTTAAGT AATT ACTTAAATAAGTA CGTAATATGACTAGA TERM 898 923071 - 923046 - f 83 -10.7 -3.00298 | opp_overlap 923042, overlap 923044 TTTTTTAATGATATA CTTATTTAAGT AATT ACTTAAATAAG TACGTAATATGACTA TERM 899 923404 - 923372 - f 86 -11.5 -2.54387 | opp_overlap 923382, overlap 923382 GAAAGCGGGAATCCA GTTGAGTAAAGCTTC TTA AAAGCTTTACTCAAA AAGAAAACAATATAA RF_0869 923532 - 924224 + | putative glycoprotein endopeptidase TERM 900 924239 - 924227 - T 80 -7.7 -4.18494 | CATTCCTAGTTAAAA GCAAC ATT GTTGC ATGGCTCAGTTTTTT RF_0870 925697 - 924378 - | hypothetical protein TERM 901 925974 - 925938 - R 74 -5.4 -4.84359 | opp_overlap 925948, overlap 925948 CTAGGTCCATAAAAA CAATAAAAAATACTAA TAATT TTAGTACTTTTAACTG GATCCCGTGGAAGGG TERM 902 925964 - 925948 - R 86 -3.8 -5.80727 | opp_overlap 925948, overlap 925938 AAAAACAATAAAAAA TACTAA TAATT TTAGTA CTTTTAACTGGATCC TERM 903 926105 - 926117 + r 75 -4.9 -5.07652 | ATATACTCAAATGAT TTCAA GAA TTGAA TTTTATTTTGAAAGG infB 928707 - 926218 - | translation initiation factor IF-2 TERM 904 926340 - 926357 + g 72 -5.7 -4.4518 | CTTCTTTAACTTCAT CTTTAAA GCGT TTTAAAG TTTTGAGTTTTCCTT TERM 905 928218 - 928236 + g 78 -6.8 -4.52502 | opp_overlap 928218 928222, overlap 928215 928222 GCATTCCTACTAAAG GAGACTTT ACA AAAGTTTC TTCTTTCTTTTTAGA TERM 906 928317 - 928329 + g 76 -5.5 -5.10208 | CTACTTTTTCTTCTT CGGCA TTT TGCTG TTTTTGTTCAACTTC TERM 907 928557 - 928543 - G 71 -8.6 -2.95652 | overlap 928542 TTTATTTAATGAAAG GGTAGT AGT ACTACC GGTAGAGCTTTTTCT nusA 930506 - 928995 - | transcription elongation factor NusA TERM 908 930520 - 930531 + r 73 -4.4 -5.12617 | ATACATTATCTCTTA TTGC TTTA GCAA TTTTTTAAATACTTC RF_0873 931002 - 930517 - | hypothetical protein TERM 909 931025 - 931041 + r 76 -9.4 -3.12138 | opp_overlap 931025, overlap 931023 931021 GTTTATAACAAAAAA GGTGGG ATAAA CCCACC TATCTATAATTTTTA TERM 910 931041 - 931025 - R 100 -9.4 -5.55769 | opp_overlap 931025 931023 931021 GTTTATAACAAAAAA GGTGGG ATAAA CCCACC TATCTATAATTTTTA RF_0874 932514 - 931129 - | hypothetical protein TERM 911 932497 - 932515 + g 71 -7.6 -3.4252 | opp_overlap 932497 932488 TTGAAATTTGTATAA TATGTATT TAA AATACATA TTATAGTAACTAGAC TERM 912 932834 - 932824 - g 74 -4 -5.1764 | GATATAATAGAAAAA TTAG AAC CTAA TATGGATATAGTAGA RF_0875 932581 - 933009 + | putative transcriptional regulator tlyA 933752 - 932988 - | hemolysin A TERM 913 933815 - 933847 + r 79 -10.1 -2.80821 | opp_overlap 933810 933813, overlap 933813 933811 933808 AGAAAATGTACAATT TGTCTAATTGAAAGT TGC AGTTTCAATTAGACG TAATATATTTGAGCC tyrS 935146 - 933911 - | tyrosyl-tRNA synthetase RF_0878 935411 - 935860 + | hypothetical protein TERM 914 936005 - 935989 - f 71 -8.1 -3.31144 | overlap 935992 TCGTCATTGCGAGAA GAATTAC AAA GTAATTC GACGAAGCAATCTAG TERM 915 936042 - 936028 - f 77 -4.3 -5.18357 | opp_overlap 936028 936021 CAATCTAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT TERM 916 936028 - 936042 + F 87 -4.3 -5.73672 | opp_overlap 936028, overlap 936021 CAATCTAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT TERM 917 936760 - 936792 + G 71 -7.7 -3.41878 | TTTATCACTATCCTA CAGCTGTTATGGCAA CCT TTGTCACAGCAGCAG TTGTAGCTTCACCGG RF_0879 936672 - 937013 + | hypothetical protein TERM 918 937067 - 937031 - T 77 -9.1 -3.28785 | opp_overlap 937041, overlap 937024 937034 937035 937041 CTCTAAAATAGCTAA TAACTAAAAATACTAAC AAC ATTAGTATTTTTAACTA GACCCCGTGGTCAAG TERM 919 937064 - 937034 - T 79 -8.6 -3.77264 | opp_overlap 937041, overlap 937024 937031 937035 937041 TAAAATAGCTAATAA CTAAAAATACTAAC AAC ATTAGTATTTTTAA CTAGACCCCGTGGTC TERM 920 937063 - 937035 - T 79 -9.9 -2.85274 | opp_overlap 937041, overlap 937024 937034 937031 937041 AAAATAGCTAATAAC TAAAAATACTAAC AAC ATTAGTATTTTTA ACTAGACCCCGTGGT TERM 921 937057 - 937041 - T 73 -4.5 -4.99435 | opp_overlap 937041, overlap 937035 937034 937031 GCTAATAACTAAAAA TACTAAC AAC ATTAGTA TTTTTAACTAGACCC TERM 922 937353 - 937342 - T 72 -3.6 -5.22312 | AGTCAGAGTAAAAAA CGAG TCTT CCCG ATTAAGTGTGTAAAC RF_0880 937623 - 937381 - | transposase TERM 923 937452 - 937412 - G 79 -4.8 -5.16237 | gap 2, opp_overlap 937415 937440 937447, overlap 937416 AATTTTATTAAAAAA TGAGCCATAGCCGCATTCCA ATT TGGTATG-GGC-ATGGACCA TTTTTTGGTCATGTA TERM 924 937440 - 937452 + g 72 -3.3 -5.20216 | opp_overlap 937416 937412, overlap 937415 937447 CATTCCAATTTGGTA TGGGC ATG GACCA TTTTTTGGTCATGTA RF_0881 938651 - 937698 - | transposase RF_0882 939362 - 938859 - | hypothetical protein RF_0883 940578 - 939415 - | hypothetical protein TERM 925 941238 - 941203 - H 100 -18 -2.52896 | opp_overlap 941208 941213, overlap 941208 941213 GTAGGCGGGAATCCA GTAAAGTAAAGCTTTT TTTT AAAAGCTTTACTTTAC AAAAACTATATAATA TERM 926 941208 - 941233 + H 91 -12.1 -3.54129 | opp_overlap 941208 941203 941213, overlap 941213 CGGGAATCCAGTAAA GTAAAGCTTTT TTTT AAAAGCTTTAC TTTACAAAAACTATA TERM 927 941233 - 941208 - H 100 -12.1 -3.794 | opp_overlap 941208 941213, overlap 941203 941213 CGGGAATCCAGTAAA GTAAAGCTTTT TTTT AAAAGCTTTAC TTTACAAAAACTATA TERM 928 941281 - 941252 - H 89 -11.1 -3.72941 | opp_overlap 941259, overlap 941259 ACAAAAACTATATAA TAAAAAATCTTTA AAAT TAAAGATTTTTTA GCCTGGTTCCCTGCT TERM 929 941259 - 941274 + H 75 -4.8 -5.07053 | opp_overlap 941259 941252 CTATATAATAAAAAA TCTTTA AAAT TAAAGA TTTTTTAGCCTGGTT TERM 930 941274 - 941259 - H 85 -4.8 -5.60689 | opp_overlap 941259, overlap 941252 CTATATAATAAAAAA TCTTTA AAAT TAAAGA TTTTTTAGCCTGGTT spoT9 941605 - 942276 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein proP8 943588 - 942233 - | proline/betaine transporter TERM 931 942633 - 942601 - G 70 -4.4 -4.77986 | opp_overlap 942601 GCAAATATGGAAAAA TTAAAATAGTAATA GTAAA TATCACTGTTTTAA ATTTAATAAGAGTTA RF_0886 944468 - 943794 - | hypothetical protein TERM 932 946730 - 946746 + G 77 -8.1 -3.86252 | ATGATTCCTTAACCG GCTTATA TAA TATAAGC TTATATTTAGTAGGA RF_0887 944569 - 950247 + | large extracellular alpha-helical protein TERM 933 950436 - 950465 + T 85 -11.1 -3.23735 | opp_overlap 950443, overlap 950443 AGCGGGGATCCATAT TAAAAAATCTTTA AAAT TAAAGATTTTTTA TTACATAGTTTTTTT TERM 934 950458 - 950443 - T 79 -4.8 -5.22312 | opp_overlap 950436 950443 ATCCATATTAAAAAA TCTTTA AAAT TAAAGA TTTTTTATTACATAG TERM 935 950443 - 950458 + T 82 -4.8 -5.4833 | opp_overlap 950443, overlap 950436 ATCCATATTAAAAAA TCTTTA AAAT TAAAGA TTTTTTATTACATAG TERM 936 950479 - 950513 + T 100 -13.2 -2.52896 | opp_overlap 950484 950489, overlap 950484 950489 TATTACATAGTTTTT TTAAAGTAAAGCTTTT AAA AAAAGCTTTACTTTAC TGGATTCCCGCCTAC TERM 937 950508 - 950484 - T 100 -13.1 -3.54129 | opp_overlap 950479 950484 950489, overlap 950489 CATAGTTTTTTTAAA GTAAAGCTTTT AAA AAAAGCTTTAC TTTACTGGATTCCCG TERM 938 950484 - 950508 + T 100 -13.1 -3.794 | opp_overlap 950484 950489, overlap 950479 950489 CATAGTTTTTTTAAA GTAAAGCTTTT AAA AAAAGCTTTAC TTTACTGGATTCCCG TERM 939 950489 - 950503 + T 74 -7.2 -4.10953 | opp_overlap 950484 950489, overlap 950484 950479 TTTTTTTAAAGTAAA GCTTTT AAA AAAAGC TTTACTTTACTGGAT TERM 940 950503 - 950489 - T 74 -7.2 -4.05788 | opp_overlap 950489 950484 950479, overlap 950484 TTTTTTTAAAGTAAA GCTTTT AAA AAAAGC TTTACTTTACTGGAT TERM 941 950584 - 950620 + T 100 -10.5 -4.82901 | opp_overlap 950594, overlap 950594 CTTGACCACGGTATC CAGTTAAAAATACTAAT ATT ATTAGTATTTTTTATTG TTTTTGTGGACCCAA TERM 942 950610 - 950594 - T 79 -6.7 -4.67353 | opp_overlap 950584 950594 GTATCCAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTTATTGTTTTT TERM 943 950594 - 950610 + T 100 -6.7 -5.80727 | opp_overlap 950594, overlap 950584 GTATCCAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTTATTGTTTTT RF_0888 951179 - 950940 - | hypothetical protein TERM 944 951061 - 951077 + g 70 -7.3 -3.64103 | TTTTTATCTTGATGC GGTTCAA AAA TTGAGCC TTTAAGATGTGGATA RF_0889 951439 - 951182 - | hypothetical protein fadB 953706 - 951544 - | 3-hydroxyacyl-CoA dehydrogenase FadB TERM 945 952356 - 952328 - G 74 -7.7 -3.91716 | opp_overlap 952328 952327 TTATGGTTTAAACAA TTCATTTTTGT AGTAATA ACAAAAATGAA ATTCTCACGATAATT TERM 946 953135 - 953105 - G 74 -4 -5.29385 | AATTCAAGTAAAAAA CACCCTACTCTATT AGC AATAAAGCCAGGCG TATCATTACATTTTA comF 954567 - 954211 - | competence protein F RF_0892 955232 - 954918 - | hypothetical protein ubiH 956691 - 955546 - | 2-octaprenyl-6-methoxyphenyl hydroxylase RF_0894 956965 - 956663 - | putative monovalent cation/H+ antiporter subunit F TERM 947 957071 - 957057 - H 91 -4.3 -6.04419 | opp_overlap 957057 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG TERM 948 957094 - 957110 + H 71 -8.1 -3.31263 | overlap 957097 CTGGATTGCTTCGTC GAATTAC TAT GTAATTC TTCTCGCAATGACGT TERM 949 957203 - 957186 - H 86 -11.3 -2.93109 | CAGAAAAGCACTAGA TTCCCGC CTAC GCGGGAA TGACAATATCACACA ntrX 957436 - 958863 + | nitrogen assimilation regulatory protein NtrX RF_0896 958832 - 960601 + | hypothetical protein TERM 950 960728 - 960679 - T 71 -5.2 -4.54727 | gap 2, overlap 960681 TTTTTGAAATTAAAA GCTCGCTTTATGCTGGATTCCCGC ATCC GCGGGAATG-A-CATAAATCGATC CACGCAACAAGACTG TERM 951 960753 - 960741 - T 71 -7.7 -3.42256 | ATCCACGCAACAAGA CTGCT AAA AGCAG AAATGGCATAGAAAT RF_0897 961817 - 960768 - | hypothetical protein RF_0898 962377 - 962129 - | cytotoxic translational repressor of toxin-antitoxin system RelE RF_0899 962645 - 962370 - | antitoxin of toxin-antitoxin system pbpA1 964520 - 962736 - | penicillin-binding protein TERM 952 962971 - 962959 - G 72 -9.1 -2.71731 | opp_overlap 962942 962970 TGTACTTGGGAAGTA CCGGT TTT ACCGG CAAGCTGCCTATTTT TERM 953 963818 - 963835 + g 70 -6.3 -4.22009 | TGTCTTCACCCGATT TAGTAGG GGTT CCTGCTA TTTCTCTTACCTGCT RF_0901 965031 - 964510 - | hypothetical protein TERM 954 965195 - 965209 + r 91 -4.3 -6.04419 | opp_overlap 965195 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 955 965673 - 965645 - R 83 -10.9 -2.80443 | opp_overlap 965636 GGATATTTGACGAGA TTGCCACGCAGCC TAT GGCTGCGTAGCTC ATGACGATATCTATA pbpA2 967391 - 965706 - | penicillin-binding protein ftsL 968078 - 967521 - | cell division protein FtsL mraW 969057 - 968137 - | S-adenosyl-methyltransferase MraW TERM 956 968912 - 968933 + g 71 -6.6 -4.08058 | opp_overlap 968912, overlap 968890 GGATCACGATCCAAA GCTGTGAT ATAACA GTCACAGC TTTCTAATATTGCTT mraZ 969506 - 969057 - | cell division protein MraZ panF 970343 - 971779 + | Sodium/pantothenate symporter TERM 957 971801 - 971817 + T 71 -8.1 -3.31144 | opp_overlap 971755, overlap 971754 971751 971804 TGAGATTGCTTCGTC GAATTAC GTT GTAATTC TTCTCGCAATGACGA RF_0907 972294 - 971860 - | hypothetical protein RF_0908 972803 - 972420 - | hypothetical protein RF_0909 972951 - 972781 - | hypothetical protein TERM 958 972964 - 973011 + H 77 -3.8 -5.4251 | opp_overlap 972951 972964 972965, overlap 972968 CATGAGCTATAAATA TTTATTTTATAACTCATACT ACCATATA ATTATGAGTTATAAAATTAG TTTTTTCTATATGAA TERM 959 972968 - 973007 + H 71 -6.8 -4.01646 | opp_overlap 972951 972965 972964, overlap 972964 AGCTATAAATATTTA TTTTATAACTCATACT ACCATATA ATTATGAGTTATAAAA TTAGTTTTTTCTATA RF_0910 973108 - 973356 + | antitoxin of toxin-antitoxin system StbD RF_0911 973347 - 973610 + | toxin of toxin-antitoxin system uvrC 975543 - 973615 - | excinuclease ABC subunit C TERM 960 974297 - 974285 - G 74 -6.9 -4.25104 | TCCTTTTTATCAAAA CCGGC TTT ACCGG CAACTACCATAACAC TERM 961 975262 - 975273 + g 71 -3 -5.28481 | opp_overlap 975262 AAGAAGAATATTAAA TTTC GGCT GAAA TTTTTTGATTAGCTG RF_0913 976202 - 975672 - | hypothetical protein RF_0914 976650 - 976393 - | hypothetical protein RF_0915 978121 - 977066 - | methylated-DNA--protein-cysteine methyltransferase TERM 962 978063 - 978050 - G 74 -3.9 -5.25803 | opp_overlap 978050 AACCGCTACAAAAAA GATAT TTTC ATATC TGTCATCTTTATTAA dat 978717 - 978211 - | methylated-DNA--protein-cysteine methyltransferase RF_0917 978925 - 979260 + | hypothetical protein RF_0918 980748 - 979318 - | Type I site-specific restriction-modification system, R (restriction) subunit TERM 963 980840 - 980859 + rH 82 -5 -5.42259 | overlap 980858 TTTGTATTGGAAAGT GCATCTAG GCTA CTATATGC TTTTTTTAAAGCTAC RF_0919 981809 - 980943 - | Type I site-specific restriction-modification system, R (restriction) subunit TERM 964 981081 - 981061 - GH 85 -10.5 -3.55563 | opp_overlap 981060 981061 ATTTTATCTGCTAAA TCACCGTAC TGA GTACGATGA CTTTCGTCGACAAGG RF_0920 981720 - 982673 + | transposase TERM 965 982931 - 982919 - g 72 -3.3 -5.20216 | overlap 982908 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAACA RF_0921 982748 - 982990 + | transposase RF_0922 983033 - 983572 + | ankyrin repeat-containing protein RF_0923 984652 - 983717 - | ankyrin repeat-containing protein RF_0924 985089 - 984883 - | lysozyme RF_0925 985836 - 986273 + | hypothetical protein RF_0926 986553 - 986311 - | transposase TERM 966 986370 - 986382 + g 72 -3.3 -5.20216 | overlap 986377 TGTTCCAATTTGGTA TGGAC ATG GACCA TTTTTTGGTCATGTA RF_0927 987581 - 986628 - | transposase TERM 967 987809 - 987779 - H 88 -3.4 -6.04419 | AAAACAATAAAAAAA CAACAAAAATAATT TTA AAATATTGCTGTTG TTGTTGGTATAGTGG TERM 968 987871 - 987902 + H 72 -9 -2.72144 | overlap 987870 AATCCACTATACACC TCAAGAGTAAAA TTTAAGGT TTTTACTCTTGA CTTTCAAGACGGTAG TERM 969 988670 - 988658 - g 72 -2.7 -5.5074 | TAATCTAATAAAAAA TCGTT TTA AACAA GAAGTTATAAATGAA RF_0928 988224 - 988757 + | hypothetical protein TERM 970 989397 - 989375 - g 81 -4.2 -5.59655 | TAAAGCAAGAAAAAA CAAAACTCGT AAA ACAAGCTTTA AATACACCGTCTAAG RF_0929 989155 - 989499 + | hypothetical protein TERM 971 989776 - 989790 + F 83 -4.3 -5.69023 | opp_overlap 989776 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTAATCTTTT TERM 972 989938 - 989954 + F 86 -3.8 -5.80727 | opp_overlap 989938 GGGATCCAGTTAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT RF_0930 990157 - 991110 + | transposase TERM 973 991368 - 991356 - g 72 -3.3 -5.20216 | overlap 991345 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAACA RF_0931 991185 - 991427 + | transposase RF_0932 992207 - 991464 - | hypothetical protein RF_0933 992695 - 992495 - | Phage-related lysozyme RF_0934 993011 - 992745 - | hypothetical protein RF_0935 993889 - 993596 - | hypothetical protein RF_0936 994576 - 994106 - | hypothetical protein TERM 974 994293 - 994309 + g 74 -7.3 -4.1023 | overlap 994287 TCCCCATCCTTACTT CTAGTGA TTA TCGCTAG TTCTTCTTTAACATT RF_0937 995258 - 994740 - | hypothetical protein RF_0938 996077 - 995862 - | hypothetical protein TERM 975 995891 - 995908 + g 81 -9.9 -3.15663 | TAACTAACCCCCAAG GTAACGG CTGA CCGTTAC TTCCTACGACTAAAT RF_0939 996864 - 996184 - | ankyrin repeat-containing protein TERM 976 997021 - 996974 - R 81 -9.9 -3.09635 | opp_overlap 996982 996986 997020 ATTGCGAGGAGCGAA GCGACGTGGCAATCTCATGAA GTAATA TTCCTGAGATTGCTTCGTCGA AACTTGCAGTTTCTT TERM 977 996982 - 997013 + r 83 -10.3 -3.15579 | opp_overlap 996974, overlap 996986 GAGCGAAGCGACGTG GCAATCTCATGAA GTAATA TTCCTGAGATTGC TTCGTCGAAACTTGC RF_0940 997973 - 997104 - | nucleotidyltransferase/HEPN domain-containing protein TERM 978 998111 - 998087 - R 70 -4.4 -4.7878 | opp_overlap 998087 TATTTACAAAATAAA CCTAAAAAAA CAAGT TTTTTGTAGG TTTTACTAGATTCCT TERM 979 998139 - 998122 - R 77 -9.9 -2.78816 | GTAGGTTTTACTAGA TTCCTGC TTCC GCAGGAA TGACATTGAACGCTT secA 1001039 - 998319 - | preprotein translocase subunit SecA prsA 1001273 - 1002121 + | protein export protein PrsA precursor TERM 980 1002222 - 1002238 + T 71 -8.1 -3.31144 | overlap 1002180 1002179 1002225 TGAGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGACGG acpS 1002679 - 1002284 - | 4'-phosphopantetheinyl transferase TERM 981 1002569 - 1002591 + g 76 -3.4 -5.40072 | opp_overlap 1002589, overlap 1002571 CAATAAACTAAACTG TGCTAACTCC TTT GAAGTTAGAA TTTTTTTAGCAAAAA rpoZ 1003060 - 1002680 - | DNA-directed RNA polymerase subunit omega TERM 982 1003227 - 1003241 + r 88 -7.2 -4.96848 | TTTTTGAAGTTCATC GAGTAT ATT ATACTC TTTTTATATCCGCAC murA 1004493 - 1003234 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase RF_0946 1004852 - 1004592 - | excinuclease ABC subunit C gyrB 1007382 - 1004956 - | DNA gyrase subunit B TERM 983 1007148 - 1007161 + g 88 -6.7 -5.29846 | GCCCGTTATCGGACA CGGTT ACCG AACCG TTTTTATTTAACGTT RF_0948 1007625 - 1008485 + | HAD family hydrolase RF_0949 1009189 - 1008785 - | glutamine amidotransferase RF_0950 1010448 - 1009261 - | ankyrin repeat-containing protein TERM 984 1009395 - 1009406 + g 83 -5.8 -5.20783 | opp_overlap 1009394 1009395 GAGAGCGTGCAAAAT CAGG TTGA CCTG TTTTTATGTTTACCT TERM 985 1010686 - 1010674 - H 73 -7.7 -3.70438 | opp_overlap 1010674 1010673, overlap 1010662 AAACTATTAGGTAAA TAGGC CAT GCCTA ATTTCAATATATTTA TERM 986 1011467 - 1011443 - g 89 -11.7 -3.16881 | opp_overlap 1011450, overlap 1011450 TAGGTAGTGTATCAA TCGATAATATA ATT TATATTATCGA AGAACAAGCCGGAAA TERM 987 1011793 - 1011779 - g 74 -5.6 -4.75288 | opp_overlap 1011781, overlap 1011781 TTATATTAAAAGAAA TAGCCG TAT CGGCTT TTAACGGTTTTGTAC TERM 988 1011781 - 1011791 + G 83 -8.2 -4.19879 | opp_overlap 1011779 1011781 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT TERM 989 1011791 - 1011781 - g 79 -8.2 -3.98052 | opp_overlap 1011781, overlap 1011779 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT mgtE 1010680 - 1012050 + | magnesium transporter RF_0952 1012350 - 1012054 - | hypothetical protein TERM 990 1012998 - 1013030 + G 87 -8.7 -4.28994 | opp_overlap 1012998 1013004, overlap 1013003 CACCTGAGAAAGCTA GAAAAATTATTGAAG AGA CTTTAATAAATTTTC TTTTAGTCACTGCTA TERM 991 1013024 - 1013004 - g 70 -4.1 -4.95896 | opp_overlap 1013003 1012998, overlap 1012998 AGAAAGCTAGAAAAA TTATTGAAG AGA CTTTAATAA ATTTTCTTTTAGTCA spoT3 1012478 - 1013167 + | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein RF_0954 1013972 - 1013130 - | proline/betaine transporter RF_0955 1014440 - 1013976 - | proline/betaine transporter RF_0956 1015385 - 1015113 - | cytotoxic translational repressor of toxin-antitoxin system RelE RF_0957 1015599 - 1015369 - | antitoxin of toxin-antitoxin system TERM 992 1015982 - 1016012 + G 83 -6.9 -4.77757 | opp_overlap 1015985, overlap 1015985 1016000 GAAACAAATTCTTTA CAATCGGGGTTAA CAAGC TTAACACCGATGG TTTTAATTTTTGCCG yajC 1015814 - 1016317 + | preprotein translocase subunit YajC secD 1016301 - 1017857 + | preprotein translocase subunit SecD TERM 993 1017942 - 1017906 - f 88 -9.1 -4.2828 | opp_overlap 1017916, overlap 1017909 1017910 1017916 CGGTATCCAGTAAAA CAACTAAAAATATCAAT AAT ATTGATATTTTTAACTA GACCCCGTGGACAAG TERM 994 1017939 - 1017909 - f 100 -10.8 -4.26327 | opp_overlap 1017916, overlap 1017906 1017910 1017916 TATCCAGTAAAACAA CTAAAAATATCAAT AAT ATTGATATTTTTAA CTAGACCCCGTGGAC TERM 995 1017938 - 1017910 - f 89 -12.1 -3.15073 | opp_overlap 1017916, overlap 1017909 1017906 1017916 ATCCAGTAAAACAAC TAAAAATATCAAT AAT ATTGATATTTTTA ACTAGACCCCGTGGA TERM 996 1017932 - 1017916 - f 85 -6.7 -5.07971 | opp_overlap 1017916, overlap 1017910 1017909 1017906 TAAAACAACTAAAAA TATCAAT AAT ATTGATA TTTTTAACTAGACCC TERM 997 1017916 - 1017932 + F 79 -6.7 -4.65895 | opp_overlap 1017910 1017909 1017906 1017916 TAAAACAACTAAAAA TATCAAT AAT ATTGATA TTTTTAACTAGACCC TERM 998 1017965 - 1017945 - f 100 -14 -2.90901 | overlap 1017957 ATATTTTTAACTAGA CCCCGTGG ACAAG CCACGGGG TGACAATGGTGGACA TERM 999 1018045 - 1018031 - g 70 -4.4 -4.89393 | CAAATGTTATAAAAA TAATTA TCG TAATTA GCTTATTAATAGGAG TERM 1000 1018326 - 1018316 - g 70 -4 -4.93454 | TAAATAAACATAAAA TAGA TAT TCTA CCTGTTTTTATCACT RF_0960 1018003 - 1018620 + | Sco2 protein precursor ccmE 1018715 - 1019101 + | cytochrome c-type biogenesis protein CcmE TERM 1001 1019501 - 1019488 - g 71 -8.1 -3.21934 | opp_overlap 1019488 1019487 1019485, overlap 1019487 GGTCGGTTATAAAAT GCCGA GCAG TCGGC GTATTGATGATGGAA ppa 1019229 - 1019750 + | inorganic pyrophosphatase mviN 1019942 - 1021612 + | integral membrane protein MviN traX 1021593 - 1022336 + | F pilin acetylation protein TraX TERM 1002 1022493 - 1022483 - g 74 -4 -5.31456 | GCAATTCAGAAAAAA CAAA CTA TTTG AAATTAACTTAGATA RF_0965 1022421 - 1023023 + | hypothetical protein RF_0966 1024225 - 1023380 - | transposase RF_0967 1024735 - 1024520 - | transposase spoT10 1025469 - 1024855 - | guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein TERM 1003 1025695 - 1025673 - g 77 -7.8 -4.05322 | opp_overlap 1025678, overlap 1025676 AAATCTCCACATAAA CTACATAGAT GTA ATCTATGTTG GGATATAAATTCTGA TERM 1004 1025692 - 1025676 - g 70 -8.1 -3.06418 | opp_overlap 1025678, overlap 1025673 TCTCCACATAAACTA CATAGAT GTA ATCTATG TTGGGATATAAATTC TERM 1005 1025978 - 1025953 - g 90 -9.3 -4.59207 | ACAAAGAGCATAAAA TATTGTTTTTA TTTA TAAAAACAATA TCAGCTCTAAAAAAT RF_0969 1025565 - 1026269 + | acetyltransferase TERM 1006 1028542 - 1028530 - g 71 -2 -5.37593 | GCTTAAATCAAAAAA TTCA GTTAT TGAA TCAAGATATACAACA RF_0970 1026387 - 1029341 + | Na+/proline symporter, signal transduction histidine kinase RF_0971 1029461 - 1030306 + | transposase RF_0972 1030734 - 1032047 + | hypothetical protein RF_0973 1032882 - 1033661 + | hypothetical protein RF_0974 1033658 - 1033945 + | hypothetical protein RF_0975 1034014 - 1034625 + | transposase RF_0976 1034600 - 1035043 + | transposase TERM 1007 1035499 - 1035486 - g 73 -8.1 -3.53761 | TAATGCTGGGCTAAA CCAGG GAAA CCTGG ACTCCATATTCAAAA RF_0977 1035040 - 1035840 + | transposase/IS protein RF_0978 1036156 - 1035905 - | hypothetical protein TERM 1008 1038258 - 1038235 - g 74 -3.9 -5.26875 | TTTCTAATCAAAAAA TACCGATGA TTGCCG TAATCGGTA AGCAGGAAAAAGAAA thrS 1036470 - 1038377 + | threonyl-tRNA synthetase TERM 1009 1038439 - 1038425 - T 71 -8.6 -2.83255 | overlap 1038417 1038436 ATAATATGTATCATA GGGATA TGA TATCCC AGTTAGGAAAAATCC TERM 1010 1038546 - 1038535 - T 86 -3 -6.11243 | ATCCAAGAAAAAAAA TATC AAGA GATA AAATTATTGGGCAAG RF_0980 1039117 - 1038698 - | acetyltransferase TERM 1011 1040699 - 1040684 - g 70 -4.6 -4.82128 | TCATGAAATAGAAAA TGCCGC CAAA GCTGCA AATATCCATGAATTT mdlB 1039209 - 1041092 + | ABC-type multidrug transport system, ATPase and permease components RF_0982 1042314 - 1041511 - | hypothetical protein RF_0983 1042856 - 1042443 - | hypothetical protein TERM 1012 1042731 - 1042758 + g 86 -4.2 -5.82316 | opp_overlap 1042733, overlap 1042733 ATTTGGCGAATCATC AATATTACCTCC TTCA GTAGGTAATATA TTTTTTTTACGTGCT TERM 1013 1042733 - 1042756 + g 79 -6.8 -4.5536 | opp_overlap 1042733, overlap 1042731 TTGGCGAATCATCAA TATTACCTCC TTCA GTAGGTAATA TATTTTTTTTACGTG RF_0984 1044046 - 1042856 - | hypothetical protein tolC 1044264 - 1045628 + | TolC family type I secretion outer membrane protein RF_0986 1045630 - 1046028 + | hypothetical protein TERM 1014 1046137 - 1046110 - f 73 -9.2 -2.80113 | gap 1, opp_overlap 1046106 1046105, overlap 1046077 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGTTTTAGGATA RF_0987 1046173 - 1047873 + | ankyrin repeat-containing protein TERM 1015 1049791 - 1049780 - g 71 -3 -5.14563 | TGCGTTATGAAAAAA TCAT TATT ATGA CTGATGCAGATGTTG parE 1048243 - 1050231 + | DNA topoisomerase IV subunit B TERM 1016 1050260 - 1050248 - f 74 -7.7 -3.92075 | AGCGTCATTCAGAAA GCTTG ATA CAAGC GAACTTTTCGAGACA ctp 1050402 - 1051760 + | carboxyl-terminal protease TERM 1017 1052544 - 1052554 + G 71 -5.4 -4.72497 | opp_overlap 1052544 1052542 1052539, overlap 1052539 AGTGATTTAACAATA GAAG AAG CTTC TTTTGTTACTAGCTA TERM 1018 1052952 - 1052936 - g 79 -2.4 -5.89659 | AGAAAAAAATAAAAA TTATAT TAAAG ATATAA ATGATGCCGGTAAAC barA 1052022 - 1053515 + | histidine kinase sensor protein TERM 1019 1053829 - 1053805 - f 86 -7.4 -4.77775 | opp_overlap 1053805 ACTTGATAAAATAAA CATATAAAAA CAAGT TTTTTATATG TTTTACTGGATTCCC TERM 1020 1053805 - 1053829 + F 76 -7.4 -4.30978 | opp_overlap 1053805 ACTTGATAAAATAAA CATATAAAAA CAAGT TTTTTATATG TTTTACTGGATTCCC RF_0991 1053991 - 1054728 + | hypothetical protein RF_0992 1054741 - 1055403 + | hypothetical protein RF_0993 1055408 - 1056670 + | WD-40 repeat-containing protein rplM 1056764 - 1057231 + | 50S ribosomal protein L13 rpsI 1057238 - 1057723 + | 30S ribosomal protein S9 TERM 1021 1057842 - 1057826 - f 71 -8.1 -3.31144 | overlap 1057829 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 1022 1057855 - 1057889 + F 87 -7.5 -4.91712 | gap 1, opp_overlap 1057865, overlap 1057865 TTCGACGAAGCAATC CAGTAAAA-AATGCTA AGAT TAGCATTTTTTTATTG TTTTTCTGGATTGCC TERM 1023 1057865 - 1057878 + F 95 -5.3 -6.04419 | opp_overlap 1057865, overlap 1057855 CAATCCAGTAAAAAA TGCTA AGAT TAGCA TTTTTTTATTGTTTT TERM 1024 1057878 - 1057865 - f 80 -5.3 -5.18357 | opp_overlap 1057865 1057855 CAATCCAGTAAAAAA TGCTA AGAT TAGCA TTTTTTTATTGTTTT TERM 1025 1059115 - 1059102 - g 74 -5.3 -4.91459 | opp_overlap 1059102 CAATATTTAGAAAAA CGTAA TTAT TTACG TTCTAAGATGCAAAA RF_0996 1058481 - 1059224 + | D-alanyl-D-alanine dipeptidase RF_0997 1059378 - 1059710 + | putative pterin-4-alpha-carbinolamine dehydratase (PHS) RF_0998 1059920 - 1060873 + | transposase TERM 1026 1061131 - 1061119 - g 72 -3.3 -5.20216 | overlap 1061108 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAACA RF_0999 1060948 - 1061190 + | transposase TERM 1027 1061438 - 1061400 - T 88 -11.5 -3.18912 | gap 1, opp_overlap 1061404 1061407, overlap 1061404 1061407 TGAGCTACCGAGGAA TAT-AGAAGTTATCTAAA AATT TTTAGATAACTTCTTATA ACAAATCTTTTCTAT TERM 1028 1061404 - 1061433 + T 100 -13.9 -3.31515 | opp_overlap 1061400 1061404 1061407, overlap 1061407 CTACCGAGGAATATA GAAGTTATCTAAA AATT TTTAGATAACTTC TTATAACAAATCTTT TERM 1029 1061433 - 1061404 - T 100 -13.9 -3.13867 | opp_overlap 1061404 1061407, overlap 1061400 1061407 CTACCGAGGAATATA GAAGTTATCTAAA AATT TTTAGATAACTTC TTATAACAAATCTTT TERM 1030 1061407 - 1061430 + T 83 -9.8 -3.7941 | opp_overlap 1061404 1061400 1061407, overlap 1061404 CCGAGGAATATAGAA GTTATCTAAA AATT TTTAGATAAC TTCTTATAACAAATC TERM 1031 1061430 - 1061407 - T 82 -9.8 -3.70722 | opp_overlap 1061407 1061404, overlap 1061404 1061400 CCGAGGAATATAGAA GTTATCTAAA AATT TTTAGATAAC TTCTTATAACAAATC lepA 1063294 - 1061492 - | GTP-binding protein LepA TERM 1032 1061535 - 1061525 - G 74 -6.8 -4.1673 | CAACGCTGCAATAAA CGCA GAT TGCG GAATTTCGATATTAC TERM 1033 1063373 - 1063402 + H 74 -7.5 -3.88603 | gap 1, opp_overlap 1063380, overlap 1063380 GACGAAGCAATCCAG TAAAAA-ATGCTAA TAT TTAGCATTTTTTTA TTAGTTTTTCTGGAT TERM 1034 1063380 - 1063394 + H 100 -7.2 -5.9003 | opp_overlap 1063380, overlap 1063373 CAATCCAGTAAAAAA TGCTAA TAT TTAGCA TTTTTTTATTAGTTT TERM 1035 1063394 - 1063380 - H 91 -7.2 -5.18357 | opp_overlap 1063380 1063373 CAATCCAGTAAAAAA TGCTAA TAT TTAGCA TTTTTTTATTAGTTT TERM 1036 1063993 - 1064007 + G 90 -11.4 -3.53224 | ATGTATTTGCGTTTT GCCGAG AGG CTCGGC TTTAAAACCGAAATA prfB 1063533 - 1064640 + | peptide chain release factor 2 TERM 1037 1064941 - 1064965 + G 82 -10.1 -3.34013 | opp_overlap 1064942, overlap 1064942 TATAACGATGAACAA ATTCTCCAACA GCC TGTTGGAGAAA TTCCTTGGGGGCATA TERM 1038 1064942 - 1064964 + G 100 -13.6 -2.60194 | opp_overlap 1064942, overlap 1064941 ATAACGATGAACAAA TTCTCCAACA GCC TGTTGGAGAA ATTCCTTGGGGGCAT TERM 1039 1064964 - 1064942 - g 100 -13.6 -4.29829 | opp_overlap 1064941 1064942 ATAACGATGAACAAA TTCTCCAACA GCC TGTTGGAGAA ATTCCTTGGGGGCAT RF_1002 1064650 - 1065666 + | hypothetical protein RF_1003 1065752 - 1066597 + | hypothetical protein TERM 1040 1066635 - 1066679 + T 74 -6.8 -4.24404 | gap 1, opp_overlap 1066644 1066647, overlap 1066631 1066639 1066641 1066644 GTTATTTTTTCTTAC TTTATT-CAATAATGGATAAG GGAA CTTATCCATCATTGTAATTAA TTTTAGCCTTTCACT TERM 1041 1066639 - 1066675 + T 73 -7.6 -3.70039 | gap 1, opp_overlap 1066644 1066647, overlap 1066631 1066635 1066641 1066644 TTTTTTCTTACTTTA TT-CAATAATGGATAAG GGAA CTTATCCATCATTGTAA TTAATTTTAGCCTTT TERM 1042 1066641 - 1066672 + T 88 -11.8 -2.94333 | opp_overlap 1066644 1066647, overlap 1066631 1066639 1066635 1066644 TTTTCTTACTTTATT CAATAATGGATAAG GGAA CTTATCCATCATTG TAATTAATTTTAGCC TERM 1043 1066644 - 1066669 + T 73 -7.7 -3.6052 | opp_overlap 1066644 1066647, overlap 1066631 1066641 1066639 1066635 TCTTACTTTATTCAA TAATGGATAAG GGAA CTTATCCATCA TTGTAATTAATTTTA TERM 1044 1066669 - 1066644 - T 81 -9.9 -3.06796 | opp_overlap 1066631 1066644 1066641 1066639 1066635, overlap 1066647 TCTTACTTTATTCAA TAATGGATAAG GGAA CTTATCCATCA TTGTAATTAATTTTA TERM 1045 1066666 - 1066647 - T 82 -9.4 -3.68073 | opp_overlap 1066631 1066644 1066641 1066639 1066635, overlap 1066644 TACTTTATTCAATAA TGGATAAG GGAA CTTATCCA TCATTGTAATTAATT hspC2 1067146 - 1066682 - | small heat shock protein hspC1 1067618 - 1067178 - | small heat shock protein TERM 1046 1067467 - 1067479 + g 75 -4.9 -4.98436 | TACTGCTTATCTTTA GTAAT AAA ATTAC TTTTTATGCTATTAG RF_1006 1068192 - 1067740 - | hypothetical protein TERM 1047 1068295 - 1068323 + r 83 -10.3 -3.15579 | opp_overlap 1068290, overlap 1068299 ACTGCAAGGAGCGTG GCAATCTCAGGAC TTT GGCATGAGATTGC TTCGTCAAAACTTAA fbcH 1069170 - 1068415 - | cytochrome c1, heme protein precursor TERM 1048 1068475 - 1068460 - G 70 -4 -5.10064 | TGCAATATAGAAAAA GATAGT AAAC ACTACC AAAAACATCATAACT RF_1008 1069739 - 1069305 - | endo/excinuclease amino terminal domain-containing protein TERM 1049 1069694 - 1069710 + g 71 -8.1 -3.31144 | overlap 1069697 TGAGATTGCTTCGTC GAATTAC TTT GTAATTC TTCTCGCAATGACGG petB 1070983 - 1069787 - | cytochrome b TERM 1050 1070835 - 1070797 - G 71 -8.3 -3.27498 | opp_overlap 1070800 TATAGTGCATAGCAA GTATCACACCGGTGATT ATCTG AATCACCAACGCAATAC CGGCAATAGAGCCCA petA 1071523 - 1070990 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit RF_1011 1072003 - 1071545 - | hypothetical protein ccmB 1072727 - 1072080 - | Heme exporter protein B mnhB 1073748 - 1072720 - | putative monovalent cation/H+ antiporter subunit B TERM 1051 1073136 - 1073179 + g 73 -7.5 -3.59262 | gap 1, overlap 1073137 1073140 TTATCGGATAAACTT TGAGTTTTGTCATACCGTGG AGGGG CCACGGTATGACATC-CTCC TTTGAAAATATCAAC TERM 1052 1073137 - 1073178 + g 82 -11 -2.75343 | gap 1, overlap 1073136 1073140 TATCGGATAAACTTT GAGTTTTGTCATACCGTGG AGGGG CCACGGTATGACATC-CTC CTTTGAAAATATCAA RF_1014 1074181 - 1073813 - | putative monovalent cation/H+ antiporter subunit G TERM 1053 1074172 - 1074207 + g 70 -8.4 -3.15579 | opp_overlap 1074168 1074164 GAGCGAAGCGACGTG GCAATCTCATGAAATA ATGC TGATTCCTGAGATTGC TTCGTCAAAACTTAC icd 1075720 - 1074245 - | isocitrate dehydrogenase RF_1016 1076411 - 1075863 - | hypothetical protein TERM 1054 1076477 - 1076463 - R 88 -11.4 -3.31144 | TCGTCATTGCGAGAA GACGCC ATA GGCGTC GACGAAGCAATCTCA TERM 1055 1076512 - 1076484 - R 100 -14.7 -3.14683 | overlap 1076488 ATAGGCGTCGACGAA GCAATCTCAGGAA TTT TGCCTGAGATTGC CACGCTCACTAACGT TERM 1056 1076508 - 1076488 - R 73 -8.3 -3.39895 | overlap 1076484 GCGTCGACGAAGCAA TCTCAGGAA TTT TGCCTGAGA TTGCCACGCTCACTA RF_1017 1077183 - 1076572 - | hypothetical protein TERM 1057 1076703 - 1076724 + g 83 -10.3 -3.12351 | TTATCTCTTGCCTTA CATCTTCTT CACT AAGAAGATG TTCAGTATCAAGACG typA 1077518 - 1079347 + | GTP-binding protein TypA TERM 1058 1079496 - 1079472 - T 70 -4.4 -4.77775 | opp_overlap 1079472 ATTTGATAAAATAAA CCTAAAAAAA CTAGT TTTTTATAGG TTTTACTGGATCCCC TERM 1059 1079626 - 1079596 - T 72 -5.7 -4.52873 | opp_overlap 1079603, overlap 1079593 1079603 GGTCCATAAAAACAA TAAAAAATACTAA TAATT TTAGTATTTTTAA CTAGATCTCGTGGTC TERM 1060 1079619 - 1079603 - T 86 -3.8 -5.80727 | opp_overlap 1079603, overlap 1079596 1079593 AAAAACAATAAAAAA TACTAA TAATT TTAGTA TTTTTAACTAGATCT pdhB 1080691 - 1079711 - | pyruvate dehydrogenase subunit beta TERM 1061 1079926 - 1079937 + g 81 -3 -5.89827 | opp_overlap 1079926 CTTCTTCTACTATAA CTAA ACGA TTAG TTTTTTTTACTGATT pdhA 1081806 - 1080826 - | pyruvate dehydrogenase e1 component, alpha subunit precursor TERM 1062 1081940 - 1081889 - R 72 -8.7 -3.09635 | overlap 1081929 ATTGCGAGGAGCGAA GCGACGCGGCAATCTCAGGCATT TATCTT ACTTCATGAGATTGCCGTGTCGA TGCTACGCATCTCCT xth1 1082785 - 1081982 - | exodeoxyribonuclease III pbpE 1083983 - 1082799 - | penicillin-binding protein 4* TERM 1063 1083414 - 1083390 - G 79 -3.6 -5.67063 | overlap 1083394 TTCATCATAAAAAAA GTTAGCTAAA TCTTT TTTAGCCACC TTTTCGATAATCATA rluA1 1084905 - 1083988 - | ribosomal large subunit pseudouridine synthase TERM 1064 1084975 - 1084959 - R 71 -8.1 -3.31144 | overlap 1084962 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 1065 1084998 - 1085012 + r 91 -4.3 -6.04419 | opp_overlap 1084998 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT coxW 1086148 - 1085135 - | cytochrome c oxidase assembly protein TERM 1066 1086028 - 1086018 - G 75 -8.2 -3.65832 | overlap 1086008 1086016 AAAGGCGGCAAAATA CCGG TTA CCGG ACGCCACTCAACTAT rne 1088427 - 1086391 - | ribonuclease E RF_1026 1088854 - 1089255 + | hypothetical protein RF_1027 1089264 - 1090001 + | hypothetical protein lpxC 1090184 - 1091050 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase RF_1029 1092135 - 1091059 - | hypothetical protein TERM 1067 1092446 - 1092431 - g 73 -9 -2.82519 | GCATCAGAGCAAGCA CCGGTA AATA TACCGG AATTAATGAAGACTG cycM 1092248 - 1092775 + | cytochrome c TERM 1068 1092839 - 1092851 + G 70 -6.3 -4.16033 | TGAATTCTTTGCAGT TCCAA ACA TTGGA TTCTTATTCTTTGGG RF_1031 1092759 - 1093232 + | hypothetical protein TERM 1069 1093301 - 1093317 + F 70 -8.1 -3.00476 | opp_overlap 1093293 TTAACTATTATCTTG CGAAAAT AAA ATTTTCG TGTATAATTCACAAT RF_1032 1093465 - 1095183 + | hypothetical protein TERM 1070 1095328 - 1095353 + T 71 -5.3 -4.65895 | TTTTCTGGATCCCCG CCTACGCGGGG ATGA CATCGAGTAGG TTTTTCGGTCCACGC ftsA 1096677 - 1095442 - | cell division protein FtsA TERM 1071 1096492 - 1096516 + g 83 -5.7 -5.13473 | opp_overlap 1096491 1096492 1096503 TTCAAGTGCATAAAT TGCCGAAACAA TGC TAGTTTCAGCA TTTTTTAAATCTGAT ftsQ 1097608 - 1096805 - | cell division protein FtsQ TERM 1072 1097493 - 1097515 + g 72 -3.5 -5.31456 | opp_overlap 1097493 ACAAAGATAATTAAA GCAATCTTA AGTCC TAATATTGC TTTTTTGTAAATTAG ddl 1098570 - 1097605 - | D-alanine--D-alanine ligase murB 1099583 - 1098696 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1073 1099652 - 1099710 + r 95 -11.8 -3.727 | opp_overlap 1099655 GTCATTGCGAGAAGC GAAGCGACGCGGCAATCTCAAGAA TTTTGTACTGC TTCATGAGATTGCCGCGTCGAGGC TTTGCCTATCCTCGC TERM 1074 1099707 - 1099655 - R 100 -16.5 -3.23452 | opp_overlap 1099652 ATTGCGAGAAGCGAA GCGACGCGGCAATCTCAAGAA TTTTGTACTGC TTCATGAGATTGCCGCGTCGA GGCTTTGCCTATCCT TERM 1075 1099795 - 1099811 + r 86 -3.8 -5.80727 | opp_overlap 1099795 GGGATCCAGTTAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT murC 1101362 - 1099926 - | UDP-N-acetylmuramate--L-alanine ligase TERM 1076 1100720 - 1100710 - G 79 -6.8 -4.55446 | CAACAAACAGCAAAA CCGT AAA ACGG CAAATTAGTAATAAA TERM 1077 1101461 - 1101445 - R 71 -8.1 -3.31263 | overlap 1101448 1101459 ACGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCTCA TERM 1078 1101504 - 1101459 - R 100 -12.7 -3.20703 | opp_overlap 1101498, overlap 1101445 AGAATTACGTAGTAA TTCGACGAAGCAATCTCAGCA TGCT TGACAAGATTGCCACGTCGAA ACTACGTTTCTCCTC RF_1038 1102755 - 1101532 - | hypothetical protein bolA1 1102810 - 1103052 + | morphology/transcriptional regulatory protein BolA RF_1040 1103049 - 1103252 + | hypothetical protein TERM 1079 1103241 - 1103229 - T 72 -4.9 -4.90519 | AAACTAAAAAAAGAA TTAAC AGA GTTAA GCGGTAAATAATTAA RF_1041 1103445 - 1103257 - | hypothetical protein RF_1042 1103719 - 1103414 - | hypothetical protein RF_1043 1104087 - 1103692 - | hypothetical protein emrA 1105257 - 1104190 - | multidrug resistance protein A pssA 1106018 - 1105251 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 1080 1105466 - 1105456 - G 71 -5.4 -4.56607 | CTAGCAAGTAGAAAA GCTA TAA TAGC TAAATATATATTAAT TERM 1081 1106187 - 1106171 - R 71 -8.1 -3.31144 | overlap 1106174 TCGTCATTGCGAGAA GAATTAC GCA GTAATTC GACGAAGCAAGGAAG TERM 1082 1106211 - 1106225 + r 87 -4.3 -5.73672 | opp_overlap 1106211, overlap 1106203 AAGGAAGAAAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTATTT TERM 1083 1106225 - 1106211 - R 95 -4.3 -6.15536 | opp_overlap 1106211 1106203 AAGGAAGAAAAAAAA TTCTG TATAT CAGAA TTTTTTTAATTATTT psd 1107030 - 1106335 - | phosphatidylserine decarboxylase RF_1047 1107380 - 1107063 - | hypothetical protein suhB 1108366 - 1107620 - | extragenic suppressor protein SuhB TERM 1084 1108261 - 1108271 + g 77 -4 -5.41746 | TACAAAATTCTTCGT TTCT TAC AGAA TTTTTTTGCAGCATT TERM 1085 1108451 - 1108468 + r 77 -9.9 -2.6063 | overlap 1108446 ATCTACTCGATGTCA TTCCTGC GAAA GCAGGAA TCCATTATAAATCGA efp 1109122 - 1108556 - | elongation factor P pleD 1109198 - 1110550 + | response regulator PleD nudH 1110575 - 1111060 + | dinucleoside polyphosphate hydrolase RF_1052 1111755 - 1111222 - | hypothetical protein RF_1053 1112287 - 1112045 - | transposase TERM 1086 1112116 - 1112076 - G 79 -4.8 -5.16237 | gap 2, opp_overlap 1112079 1112104 1112111, overlap 1112080 AATTTTATTAAAAAA TGAGCCATAGCCGCATTCCA ATT TGGTATG-GGC-ATGGACCA TTTTTTGGTCATGTA TERM 1087 1112104 - 1112116 + g 72 -3.3 -5.20216 | opp_overlap 1112080 1112076, overlap 1112079 1112111 CATTCCAATTTGGTA TGGGC ATG GACCA TTTTTTGGTCATGTA RF_1054 1113114 - 1112362 - | transposase gyrA 1116181 - 1113461 - | DNA gyrase subunit A TERM 1088 1116295 - 1116312 + r 79 -9.9 -2.92038 | AAGCTATCGATGTCA TTCCTGC GAAA GCAGGAA TCTAGTACTTTTAGC TERM 1089 1117688 - 1117678 - R 72 -2.6 -5.47399 | TTAATTGTAAAAAAA TAAT ACT ATTA ATTGATAAAAAGTAA RF_1056 1118097 - 1117744 - | hypothetical protein TERM 1090 1118022 - 1118047 + g 72 -2.7 -5.33785 | gap 1, overlap 1118025 1118028 CTCCTAGATTCTCTA TGCTAGCACTAT TAT ATAGTGTT-GTA TTTTTTGTCATAATT TERM 1091 1118028 - 1118042 + g 76 -7.2 -4.23386 | overlap 1118025 1118022 GATTCTCTATGCTAG CACTAT TAT ATAGTG TTGTATTTTTTGTCA atm1 1119943 - 1118141 - | multidrug resistance protein Atm1 RF_1058 1120274 - 1119972 - | excinuclease ABC subunit C grxC1 1120741 - 1120433 - | GrxC family glutaredoxin TERM 1092 1122776 - 1122766 - g 71 -5.4 -4.68593 | GTGATCAGCTAAAAA CTCT AGA AGAG GCAGCACTTGAATTA uvrB 1120812 - 1122797 + | excinuclease ABC subunit B rnhB 1123543 - 1122962 - | ribonuclease HII hscB 1123754 - 1124254 + | co-chaperone HscB TERM 1093 1125038 - 1125022 - g 86 -5.9 -5.43866 | overlap 1125032 CAACTTGCAAAAAAA GCTAAAG AAA CTTTAAC ATATAAAGATAGTTT hscA 1124245 - 1126158 + | chaperone protein HscA fdxB 1126223 - 1126561 + | ferredoxin RF_1065 1126574 - 1127644 + | hypothetical protein imp 1127601 - 1128575 + | TRAP-type uncharacterized transport system uspA 1128599 - 1129045 + | universal stress protein UspA TERM 1094 1129520 - 1129538 + T 73 -8.9 -2.87195 | overlap 1129519 1129517 TCACTTTCAACTTCA CAAAGCC TTGAT GGCTTTG ATATTTCTTCTGTAA sca8 1134005 - 1129497 - | cell surface antigen-like protein Sca8 TERM 1095 1130152 - 1130174 + g 79 -8.6 -3.83205 | TTTGACCTGCTACCG CTAGATTTAA ACT TTGAATCTAG TTTAGTATAAGCAAT TERM 1096 1130590 - 1130609 + g 91 -9.4 -4.42806 | TTTTCAAAACTATCT TCAGAATC CTTA GATTCTGA TTTATTTACAACTAC TERM 1097 1131543 - 1131574 + g 90 -12.4 -3.35679 | gap 1, overlap 1131545 CCTCGTAGGCAGCGG TGGTGGTGGC-GGTG GTC CACCTGCTACCACTA TTATCGGTGCAGCAA TERM 1098 1131545 - 1131572 + g 100 -12.8 -3.24924 | gap 1, overlap 1131543 TCGTAGGCAGCGGTG GTGGTGGC-GGTG GTC CACCTGCTACCAC TATTATCGGTGCAGC TERM 1099 1131602 - 1131613 + g 80 -5.8 -5.07971 | overlap 1131601 CAACAGGGGCACTAG CAGC TTTT GCTG TTTTTACTTCTTTTA TERM 1100 1131874 - 1131887 + g 70 -4.5 -4.77173 | opp_overlap 1131874, overlap 1131884 TAAATTTTTGATAAT GTTGC CGGG GCAGC TTTATTTTGTAAAGA TERM 1101 1132922 - 1132954 + g 76 -6.4 -4.64676 | opp_overlap 1132927 CTAGATCACTCATTG TGAAAGCATTGAAA TTATC TATCAATGCTTGCA TTTTCTTACCGGTCA TERM 1102 1133976 - 1133994 + g 70 -4 -5.06451 | GAGTAAGAATAATTT TATAAGTT TAG AATTTATA TTTTTTGCCATAATA pbpC 1134697 - 1137021 + | bifunctional penicillin-binding protein 1C TERM 1103 1138678 - 1138668 - g 81 -4 -5.63504 | AAGCCTATAAAAAAA TATG ATT CATA TATGGACCAAGGAAA RF_1070 1137036 - 1138919 + | hypothetical protein RF_1071 1139330 - 1139088 - | transposase TERM 1104 1139147 - 1139159 + g 72 -3.3 -5.20216 | overlap 1139154 TGTTCCAATTTGGTA TGGAC ATG GACCA TTTTTTGGTCATGTA RF_1072 1140157 - 1139405 - | transposase dapD 1141332 - 1140508 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase RF_1074 1141408 - 1142040 + | hypothetical protein TERM 1105 1142283 - 1142258 - T 100 -11.3 -5.63236 | opp_overlap 1142258 ACTTAAAAATAAAAA TACCCATAAGC CGAA ACTTATGGGTA TTACTAAAGATATAA TERM 1106 1142258 - 1142283 + T 83 -10.6 -3.16191 | opp_overlap 1142258 ACTTAAAAATAAAAA TACCCATAAG CCGAAA CTTATGGGTA TTACTAAAGATATAA trbC 1142677 - 1142318 - | VirB2 protein coxC 1143669 - 1142833 - | cytochrome c oxidase subunit III TERM 1107 1143500 - 1143488 - G 74 -6.3 -4.3587 | CACCAAGAATATAAA CAGTA ACC TACTG AAATAACTCCTGCAG TERM 1108 1143653 - 1143670 + g 72 -3.5 -5.22137 | overlap 1143648 1143655 GATTTAGTAATAGGA TGTGAAT TTGG ATTCATA TTTTATTTTATCATT coq7 1145045 - 1144392 - | ubiquinone biosynthesis protein Coq7 holA 1146039 - 1145074 - | DNA polymerase III subunit delta RF_1079 1146520 - 1146047 - | hypothetical protein RF_1080 1146632 - 1147054 + | hypothetical protein TERM 1109 1147122 - 1147172 + T 72 -9.3 -2.68071 | overlap 1147120 1147119 ATTAAAGAACTCTCT ACATCTTCCTTGCAAATCTAATA CTCTA TGTTAAATTTACAAGGAAGATGC TCGCTTTAAGTTAAG RF_1081 1147851 - 1147207 - | ankyrin repeat-containing protein TERM 1110 1147915 - 1147873 - R 88 -11.6 -3.25088 | opp_overlap 1147876, overlap 1147876 1147882 1147889 TCCTAAATTTATCAA TGATGCAAATAGCAAATTAT TAC ATAATCCGCTATTCGCATTA AATATCTATATTTTT TERM 1111 1147912 - 1147876 - R 100 -13.3 -2.80784 | opp_overlap 1147876, overlap 1147873 1147882 1147889 TAAATTTATCAATGA TGCAAATAGCAAATTAT TAC ATAATCCGCTATTCGCA TTAAATATCTATATT TERM 1112 1147906 - 1147882 - R 70 -7.3 -3.72241 | opp_overlap 1147876, overlap 1147876 1147873 1147889 TATCAATGATGCAAA TAGCAAATTAT TAC ATAATCCGCTA TTCGCATTAAATATC RF_1082 1148338 - 1147946 - | hypothetical protein TERM 1113 1148486 - 1148459 - R 73 -9.2 -2.80443 | gap 1, opp_overlap 1148452, overlap 1148435 GGATATTTGACGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGACTTTAGTAT RF_1083 1150152 - 1148659 - | heat shock protease TERM 1114 1149022 - 1149032 + g 70 -8.2 -3.14552 | overlap 1149021 ACTTAGAGCTTTAAG CGGG ACA CCCG ATTTATTACTAAAAT TERM 1115 1149976 - 1149988 + g 72 -9.1 -2.68491 | opp_overlap 1149976, overlap 1149975 ACTTGTATCATCATA TGCCG ATA CGGCA ATTCTAGTATCAATT TERM 1116 1149988 - 1149976 - G 73 -9.1 -2.82635 | opp_overlap 1149976 1149975 ACTTGTATCATCATA TGCCG ATA CGGCA ATTCTAGTATCAATT TERM 1117 1151308 - 1151324 + G 72 -8.7 -3.01791 | AATCCTGATGAGGTT GTAGCAC TTG GTGCTGC TATTCAAGGCGGAGT dnaK 1150216 - 1152099 + | molecular chaperone DnaK dnaJ 1152252 - 1153367 + | DnaJ protein TERM 1118 1153795 - 1153780 - g 79 -2.6 -5.75342 | GCCGTTGAAAAAAAA TACCAT AAAA ATGATA AAGGACATTGGGTAG chaB 1153603 - 1153818 + | cation transport regulator ChaB RF_1087 1154205 - 1154579 + | ankyrin repeat-containing protein TERM 1119 1154667 - 1154645 - f 77 -7.8 -4.08706 | overlap 1154655 TGTGTATTACAGAAA GTAGGGATAA GCT TTATTCCTAC TAATCAAGAAGAAAT RF_1088 1155128 - 1155883 + | hypothetical protein recN 1156040 - 1157680 + | DNA repair protein RecN TERM 1120 1157755 - 1157771 + F 71 -8.1 -3.31144 | opp_overlap 1157704, overlap 1157758 TGAGATTGCTTCGTC GAATTAC CAC GTAATTC TTCTCGCAATGACGA TERM 1121 1157853 - 1157867 + GF 72 -5.7 -4.34947 | opp_overlap 1157852 ATTAGAAAACGAATT TGCGA CCATT TCGCA TTTTAATAATATATT TERM 1122 1158521 - 1158496 - gf 79 -6.9 -4.67982 | opp_overlap 1158496, overlap 1158491 TTTGATCTAACAAAA GGACGATTAGA CGAA TCTACTCATCC TTTTTGCGGTGGAAC RF_1090 1157818 - 1158843 + | thermostable carboxypeptidase RF_1091 1158782 - 1159327 + | thermostable carboxypeptidase TERM 1123 1159369 - 1159340 - f 86 -11.5 -2.66106 | gap 1, overlap 1159337 TAGGCGAATAACCGA TGTCATCCCGTGGC CCC GCCACGGGATC-CA GAAAAACAATAAAAA TERM 1124 1159402 - 1159386 - f 86 -3.8 -5.80727 | opp_overlap 1159386 AAAAACAATAAAAAA TACTAA TAAAT TTAGTA TTTTAACTGGATCCC kgd 1159486 - 1162437 + | alpha-ketoglutarate decarboxylase TERM 1125 1162571 - 1162587 + F 71 -8.1 -3.31144 | overlap 1162561 1162574 TGAGATTGCTTCGGC GAATTAC TTT GTAATTC TTCTCGCAATGACGG sucB 1162668 - 1163873 + | dihydrolipoamide acetyltransferase TERM 1126 1163995 - 1164019 + F 83 -10.3 -3.28712 | AATGACGTGGTCTCG TTTTACTTTTT GAA AAAAAGTAAAA TTATCCAAAGAAAGG RF_1094 1164047 - 1164463 + | 6-pyruvoyl tetrahydropterin synthase cutA 1164466 - 1164930 + | periplasmic divalent cation tolerance protein TERM 1127 1165181 - 1165191 + G 91 -8.2 -5.1101 | opp_overlap 1165181 AGAGTAGGAATGAAA GCGG TAG CCGC TTTTTTAGGTACTAC TERM 1128 1165191 - 1165181 - g 79 -8.2 -3.97444 | opp_overlap 1165181 AGAGTAGGAATGAAA GCGG TAG CCGC TTTTTTAGGTACTAC TERM 1129 1165307 - 1165323 + G 74 -2.3 -5.65177 | ACGACAAGTAGAACT TCATTTA ATA TAATTGA TTTTTTTGTAAATAT gltP 1164971 - 1166170 + | Na+/H+-dicarboxylate symporters TERM 1130 1167123 - 1167103 - g 80 -6.3 -4.74858 | overlap 1167118 GAAAGAAAAAAAAGA TTTATATCT AGT AGATACAAA ATATGTAGATCCTTT RF_1097 1166444 - 1167190 + | hypothetical protein TERM 1131 1167418 - 1167408 - f 75 -2.6 -5.53991 | TATCGATCAAAAAAA TTAT AAT ATAA TGACTCCCTATGACG RF_1098 1167418 - 1168161 + | hypothetical protein TERM 1132 1168267 - 1168279 + T 74 -7.7 -3.93963 | opp_overlap 1168267 1168266 GAGTCCTACAAAATT GCTTG TAT CAAGC TTTGTGAATGATGCT TERM 1133 1168518 - 1168484 - T 100 -13.2 -2.52896 | opp_overlap 1168489 1168494, overlap 1168489 1168494 1168509 GTAGGCGGGAATCCA GTAAAGTAAAGCTTTT AAA AAAAGCTTTACTTTAA AAAAACTATGTAATA TERM 1134 1168513 - 1168489 - T 100 -13.1 -3.794 | opp_overlap 1168489 1168494, overlap 1168484 1168494 1168509 CGGGAATCCAGTAAA GTAAAGCTTTT AAA AAAAGCTTTAC TTTAAAAAAACTATG TERM 1135 1168489 - 1168513 + T 100 -13.1 -3.54129 | opp_overlap 1168489 1168484 1168494 1168509, overlap 1168494 CGGGAATCCAGTAAA GTAAAGCTTTT AAA AAAAGCTTTAC TTTAAAAAAACTATG TERM 1136 1168494 - 1168508 + T 74 -7.2 -4.05788 | opp_overlap 1168494 1168489 1168484, overlap 1168489 ATCCAGTAAAGTAAA GCTTTT AAA AAAAGC TTTACTTTAAAAAAA TERM 1137 1168508 - 1168494 - T 74 -7.2 -4.10953 | opp_overlap 1168489 1168494, overlap 1168489 1168484 ATCCAGTAAAGTAAA GCTTTT AAA AAAAGC TTTACTTTAAAAAAA TERM 1138 1168561 - 1168532 - T 85 -11.1 -3.23735 | opp_overlap 1168539, overlap 1168539 AAAAAAACTATGTAA TAAAAAATCTTTA ATTT TAAAGATTTTTTA ATATGGGTCCCCGCT TERM 1139 1168554 - 1168539 - T 82 -4.8 -5.4833 | opp_overlap 1168539, overlap 1168532 CTATGTAATAAAAAA TCTTTA ATTT TAAAGA TTTTTTAATATGGGT TERM 1140 1168539 - 1168554 + T 79 -4.8 -5.22312 | opp_overlap 1168532 1168539 CTATGTAATAAAAAA TCTTTA ATTT TAAAGA TTTTTTAATATGGGT TERM 1141 1168640 - 1168679 + T 82 -7.6 -4.65895 | gap 1, opp_overlap 1168652, overlap 1168642 1168644 1168645 1168652 GGCTTGACCACGGGG TCCAA-TTAAAAATACTAA AAT TTAGTATTTTTAAGTTGTA TTTTTGGATACCGCG TERM 1142 1168642 - 1168677 + T 87 -10.2 -3.94812 | gap 1, opp_overlap 1168652, overlap 1168640 1168644 1168645 1168652 CTTGACCACGGGGTC CAA-TTAAAAATACTAA AAT TTAGTATTTTTAAGTTG TATTTTTGGATACCG TERM 1143 1168644 - 1168674 + T 82 -8.6 -4.09353 | opp_overlap 1168652, overlap 1168642 1168640 1168645 1168652 TGACCACGGGGTCCA ATTAAAAATACTAA AAT TTAGTATTTTTAAG TTGTATTTTTGGATA TERM 1144 1168645 - 1168673 + T 89 -12.1 -3.04527 | opp_overlap 1168652, overlap 1168644 1168642 1168640 1168652 GACCACGGGGTCCAA TTAAAAATACTAA AAT TTAGTATTTTTAA GTTGTATTTTTGGAT TERM 1145 1168652 - 1168666 + T 78 -5.8 -4.8066 | opp_overlap 1168652, overlap 1168645 1168644 1168642 1168640 GGGTCCAATTAAAAA TACTAA AAT TTAGTA TTTTTAAGTTGTATT TERM 1146 1168666 - 1168652 - T 78 -5.8 -4.8622 | opp_overlap 1168652 1168645 1168644 1168642 1168640 GGGTCCAATTAAAAA TACTAA AAT TTAGTA TTTTTAAGTTGTATT RF_1099 1169698 - 1168895 - | ankyrin repeat-containing protein TERM 1147 1169682 - 1169662 - G 72 -2.7 -5.3321 | AAGGAATAATAAAAA TAATTATAA ACT TTAAAATTA CTTGAATAATTTTCA hemN 1170855 - 1169695 - | coproporphyrinogen III oxidase RF_1101 1171027 - 1170869 - | transposase RF_1102 1171473 - 1171015 - | transposase RF_1103 1171911 - 1171612 - | transposase TERM 1148 1172694 - 1172676 - g 73 -4.6 -5.02476 | AGATTTTGTAAAAAA TGGTTTTG AGC CAAAAACA AGTAGCGGAAAATTA TERM 1149 1172962 - 1172980 + G 70 -6.2 -4.21194 | GCAGATAAGGATTTT TATAATTA CGA TAATTATA TTTTAGATACTAAAG TERM 1150 1173028 - 1173050 + G 70 -6.2 -4.17762 | opp_overlap 1173027 CAAAAAATAAATATG CCATCAGATG CAA CACCTGAAGG TTCTTTTAAAGAATA RF_1104 1172143 - 1173819 + | prolyl endopeptidase precursor RF_1105 1173871 - 1174299 + | prolyl endopeptidase precursor TERM 1151 1174393 - 1174407 + T 100 -7.2 -5.61689 | opp_overlap 1174393 GCAATCCAGTAAAAA TGCTAA TTT TTAGCA TTTTTTATTACTTTT TERM 1152 1174407 - 1174393 - T 86 -7.2 -4.77157 | opp_overlap 1174393 GCAATCCAGTAAAAA TGCTAA TTT TTAGCA TTTTTTATTACTTTT ffh 1176213 - 1174750 - | Signal recognition particle protein TERM 1153 1176237 - 1176273 + r 74 -5.4 -4.82901 | opp_overlap 1176247 GCTTGTAGCGGAATC CAGTTTAAAATACTAA AATTA TTAGTATTTCAAGTTG TTTTTATGAACCACG TERM 1154 1176318 - 1176360 + r 100 -11.5 -4.09243 | gap 1, overlap 1176319 1176320 GTACCGGACAATTTC TA-TTCTATGTCATTCCCGC GTAG GCGGGGATGACATAGAGGTC TTTTCAAAAACTGTC TERM 1155 1176319 - 1176358 + r 100 -16.6 -3.6422 | overlap 1176318 1176320 TACCGGACAATTTCT ATTCTATGTCATTCCCGC GTAG GCGGGGATGACATAGAGG TCTTTTCAAAAACTG TERM 1156 1176320 - 1176357 + r 100 -20.1 -2.78211 | overlap 1176319 1176318 ACCGGACAATTTCTA TTCTATGTCATTCCCGC GTAG GCGGGGATGACATAGAG GTCTTTTCAAAAACT holB 1177271 - 1176477 - | DNA polymerase III subunit delta' hupA 1177902 - 1177570 - | DNA-binding protein HU TERM 1157 1178456 - 1178470 + G 86 -4.2 -5.75342 | overlap 1178458 TGAGTTTGGTTATCG TAGCTC TTG GAGCAA TTTTTTTTACCAAAC TERM 1158 1180499 - 1180473 - g 74 -6.6 -4.22041 | overlap 1180474 1180480 AAACGTCAATAGAAA TTTACAATCGGC AAT GCCGACTATAAG TATAGAAGTCAACCG TERM 1159 1180498 - 1180474 - g 81 -10.1 -3.1214 | overlap 1180473 1180480 AACGTCAATAGAAAT TTACAATCGGC AAT GCCGACTATAA GTATAGAAGTCAACC TERM 1160 1180492 - 1180480 - g 78 -9.1 -3.51721 | overlap 1180474 1180473 AATAGAAATTTACAA TCGGC AAT GCCGA CTATAAGTATAGAAG acrF 1178392 - 1181418 + | hydrophobe/amphiphile efflux-1 HAE1 family protein RF_1110 1181505 - 1181741 + | hypothetical protein RF_1111 1182591 - 1181869 - | hypothetical protein RF_1112 1182644 - 1182880 + | hypothetical protein RF_1113 1182880 - 1183320 + | hypothetical protein TERM 1161 1183354 - 1183325 - T 100 -11.7 -5.68438 | opp_overlap 1183325 TTATTAAATAAAAAA GAGTAAGATTATA GATC TATAACCTTACTC TTTAGAAAATTTTGT TERM 1162 1183325 - 1183354 + T 82 -9.5 -3.61219 | opp_overlap 1183325 TTATTAAATAAAAAA GAGTAAGATTATA GATC TATAACCTTACTC TTTAGAAAATTTTGT RF_1114 1183627 - 1183379 - | hypothetical protein RF_1115 1183980 - 1183735 - | hypothetical protein RF_1116 1184329 - 1184069 - | hypothetical protein TERM 1163 1184353 - 1184365 + H 82 -7.7 -4.70659 | opp_overlap 1184353 TCCTTGCTTAAGTTA CCATG TTT CATGG TTTTTAAATATAACG RF_1117 1184384 - 1185562 + | hypothetical protein TERM 1164 1185602 - 1185572 - T 100 -5.7 -5.95539 | opp_overlap 1185572 TGTTAAATAAAAAAA TAACATATATATA GTAAA TTTATATATGTTA TTTCTTATTTAGAGC TERM 1165 1185572 - 1185602 + T 74 -5.7 -4.56978 | opp_overlap 1185572 TGTTAAATAAAAAAA TAACATATATATA GTAAA TTTATATATGTTA TTTCTTATTTAGAGC rrmJ 1186283 - 1185600 - | ribosomal RNA large subunit methyltransferase J nusB 1186750 - 1186280 - | transcription antitermination protein NusB TERM 1166 1186823 - 1186850 + H 73 -9.2 -2.80443 | gap 1, opp_overlap 1186818 1186817, overlap 1186847 GATACCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCGTCAAATATCC TERM 1167 1187430 - 1187408 - g 83 -10.6 -3.21395 | opp_overlap 1187399, overlap 1187406 ATTCCTCCTATAATA GGTGATGTAG TAG CTTCATCACC AGCAGCGAGAGCAGA RF_1120 1187015 - 1188088 + | membrane-associated zinc metalloprotease TERM 1168 1188299 - 1188272 - f 73 -9.2 -2.80113 | gap 1, opp_overlap 1188267, overlap 1188239 TATTATTTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGGTTAATATTT omp1 1188336 - 1190642 + | Outer membrane protein omp1 TERM 1169 1190655 - 1190667 + F 73 -7.7 -3.57629 | TAAAAATGCTTCATT GTCAC CTC GTGAC TTGTCTGCGTTGTTG TERM 1170 1190764 - 1190750 - f 91 -4.3 -6.00814 | opp_overlap 1190750 AATAATTAAAAAAAA TTCTG ATTTA CAGAA TTTTTTGCTGGATTG TERM 1171 1190750 - 1190764 + F 77 -4.3 -5.18357 | opp_overlap 1190750 AATAATTAAAAAAAA TTCTG ATTTA CAGAA TTTTTTGCTGGATTG TERM 1172 1190787 - 1190803 + F 71 -8.1 -3.31144 | overlap 1190790 CTGGATTGCTTCGTC GAATTAC TGT GTAATTC TTCTCGCAATGACGG RF_1122 1191226 - 1191963 + | hypothetical protein TERM 1173 1192052 - 1192084 + T 88 -11.5 -3.26767 | opp_overlap 1192058, overlap 1192056 TTCAACTTCTTAAGT CGAATAGCAGATTAT GTA ATAATTCGCTATTCG TGTTAATTAACTATT RF_1123 1192290 - 1192087 - | hypothetical protein TERM 1174 1192453 - 1192463 + H 86 -4 -5.79595 | opp_overlap 1192453 ATTAAAAATTAAAAG TTGT ACA ACAA TTTTTTATTTTAAAC TERM 1175 1192575 - 1192586 + G 83 -4.4 -5.59357 | opp_overlap 1192575, overlap 1192560 TGCTCTTTCTAAAAA GCAA TTAT TTGC TTTTTTTGGTATGGT TERM 1176 1192891 - 1192920 + G 70 -7.3 -3.65276 | gap 1, overlap 1192901 1192907 CAAGGATTTTTTGGT GGTGCTATGATACC GAC GGTATT-TAGTACC GTTTTTATAATTTTT TERM 1177 1192907 - 1192921 + G 84 -6.4 -5.1286 | overlap 1192901 1192891 GTGCTATGATACCGA CGGTAT TTA GTACCG TTTTTATAATTTTTC TERM 1178 1193722 - 1193702 - g 79 -10.5 -2.57003 | overlap 1193701 1193699 CGACTAATAATATAG CTCTTGGCA ATA TGCCAAAAG AAAGAGTAGGTAACG emrB 1192534 - 1194093 + | multidrug resistance protein B mnhE 1194077 - 1194400 + | putative monovalent cation/H+ antiporter subunit E pyrH 1194409 - 1195137 + | uridylate kinase TERM 1179 1195193 - 1195177 - f 71 -8.1 -3.31144 | overlap 1195180 1195183 TCGTCATTGCGAGAA GAATTAC GAA GTAATTC GACGAAGCAATCCAG TERM 1180 1195230 - 1195216 - f 77 -4.3 -5.18357 | opp_overlap 1195209 1195216 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 1181 1195216 - 1195230 + F 91 -4.3 -6.04419 | opp_overlap 1195216, overlap 1195209 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 1182 1195322 - 1195366 + F 95 -10.7 -4.2828 | overlap 1195324 TTTGCGAGGAGCGTA GCGACGTGGCAATCTCAAGAG ATT CTCATAAGATTGCCACGCTCC TTTTAGTCGCTCGCA TERM 1183 1195324 - 1195365 + F 100 -13.9 -3.16647 | gap 1, overlap 1195322 TGCGAGGAGCGTAGC GA-CGTGGCAATCTCAAGAG ATT CTCATAAGATTGCCACGCTC CTTTTAGTCGCTCGC frr 1195454 - 1196014 + | ribosome recycling factor gatC 1196200 - 1196502 + | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1184 1196678 - 1196666 - g 80 -9.1 -3.65542 | overlap 1196664 TTTAGCTTTAAAACA GGCTG AAG CAGCC GATCAAAATTATGCT gatA 1196505 - 1197986 + | aspartyl/glutamyl-tRNA amidotransferase subunit A gatB 1197989 - 1199440 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 1185 1199555 - 1199504 - f 72 -9.1 -2.62192 | gap 3, overlap 1199503 1199507 TGTGAGCGAACGAAG TGAGCGTGGCAATCTCATGAAATAGT ATA AC-ACTTC-TGAGATTGCCACG-TCG ATGCTACGCATCTCC TERM 1186 1199553 - 1199507 - f 87 -11.9 -2.6072 | gap 2, overlap 1199504 1199503 GAGCGAACGAAGTGA GCGTGGCAATCTCATGAAATAGT ATA AC-ACTTC-TGAGATTGCCACGT CGATGCTACGCATCT yqiX 1199624 - 1200349 + | amino acid ABC transporter substrate-binding protein RF_1132 1200334 - 1200816 + | hypothetical protein dapB 1200824 - 1201561 + | dihydrodipicolinate reductase TERM 1187 1201893 - 1201905 + G 73 -9.1 -2.95388 | TATTTTGGGTTTATG CCGGT TTA ACCGG TATGTCGCTTGCATA RF_1134 1201607 - 1202317 + | integral membrane protein TERM 1188 1202333 - 1202360 + F 100 -9.3 -5.33848 | opp_overlap 1202337 TTGGTATCCTTTCTG CAAAGTCATGA TTTATT TCATGGCTTTG TTTTTTCATTGTCAT TERM 1189 1202599 - 1202564 - f 75 -5.1 -5.09225 | gap 1, opp_overlap 1202573, overlap 1202567 1202573 AGGGTATCCAAAAAA CAAT-AAAAATACTAA TAATT TTAGTATTTTTAACTG GATCCCGCTACAAGC TERM 1190 1202595 - 1202567 - f 90 -9.2 -4.64763 | opp_overlap 1202573, overlap 1202564 1202573 GTATCCAAAAAACAA TAAAAATACTAA TAATT TTAGTATTTTTA ACTGGATCCCGCTAC TERM 1191 1202589 - 1202573 - f 81 -3.8 -5.54403 | opp_overlap 1202573, overlap 1202567 1202564 AAAAAACAATAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATCC TERM 1192 1203290 - 1203272 - g 81 -4.5 -5.42514 | opp_overlap 1203274, overlap 1203274 GGAGAAAGGAAAAAA GGCAGCA GGAGT TTCTGCC GGTTATGTTGCTAAA RF_1135 1202790 - 1203953 + | hypothetical protein TERM 1193 1204737 - 1204726 - g 77 -3 -5.52986 | opp_overlap 1204726 ATTTTATGAAAAAAA TTTC TCCT GAAA ATTTAAATGAAATTC RF_1136 1204059 - 1204907 + | hypothetical protein TERM 1194 1205040 - 1205012 - f 100 -14.7 -3.23598 | overlap 1205004 1205016 GAAGTAATTGACGAA GCAATCTCAGGCA AAA TTCCTGAGATTGC CATGTCGGGACTACG TERM 1195 1205036 - 1205016 - f 73 -8.3 -3.41581 | overlap 1205012 1205004 TAATTGACGAAGCAA TCTCAGGCA AAA TTCCTGAGA TTGCCATGTCGGGAC TERM 1196 1205059 - 1205078 + F 70 -7.1 -3.64703 | overlap 1205057 GTCGGGACTACGTCC CTCCTCG CAATGA CGAGGGG TTTCGATGCCACGCA TERM 1197 1205946 - 1205928 - g 71 -5.2 -4.67607 | TTGGGAAGAAATAAA CGGCTTAA TAT TCATGCCG GGAACTAATAAAGCT RF_1137 1205230 - 1206363 + | penicillin acylase aspS 1208223 - 1206421 - | aspartyl-tRNA synthetase TERM 1198 1206465 - 1206477 + g 80 -7.7 -4.28188 | ATAGCATAATGCTTA GCTCT TTT AGAGC TTTATCTTCTACATA TERM 1199 1206860 - 1206834 - G 77 -10.2 -2.71924 | opp_overlap 1206833, overlap 1206833 TAGCTTGCTCTAAAG CTTCTAAGCCAC CTT GTGGCATAGAAA ATGGATTATGGCTAA TERM 1200 1206995 - 1207011 + g 90 -5.1 -5.8096 | overlap 1206991 1206996 CTTATTCTAACCTTG CCTGCAA GCT TTGCAGC TTTTTCTTTTTTATC TERM 1201 1206996 - 1207010 + g 82 -8.6 -4.04916 | overlap 1206991 1206995 TTATTCTAACCTTGC CTGCAA GCT TTGCAG CTTTTTCTTTTTTAT RF_1139 1208405 - 1209358 + | transposase TERM 1202 1209616 - 1209604 - g 72 -3.3 -5.20216 | overlap 1209593 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAACA RF_1140 1209433 - 1209675 + | transposase RF_1141 1210078 - 1209698 - | hypothetical protein RF_1142 1210964 - 1210164 - | chromosome partitioning protein pepA 1212653 - 1211145 - | leucyl aminopeptidase TERM 1203 1212114 - 1212102 - G 70 -4.1 -5.00884 | overlap 1212104 ATCCCTTGTAAAAAA TACTG CCT CAGCA ATTAATTTTTTGACT RF_1144 1212811 - 1213974 + | hypothetical protein TERM 1204 1214029 - 1214002 - T 100 -10.1 -5.47964 | opp_overlap 1214002 ACAAAATAAGAAAAA GCCTATAAAAA CTAAGT TTTTTATAGGC TTTTTTTATCAATAA TERM 1205 1214002 - 1214029 + T 100 -10.1 -5.64274 | opp_overlap 1214002 ACAAAATAAGAAAAA GCCTATAAAAA CTAAGT TTTTTATAGGC TTTTTTTATCAATAA TERM 1206 1214182 - 1214146 - T 100 -15.4 -3.44586 | gap 1, overlap 1214147 AGGAATCCAGCATAA CTCGATGTCATTCCCGC CTAC GCGGGAATGACAT-GAA ACGAAAAATGTCCGG TERM 1207 1214181 - 1214147 - T 100 -16.7 -2.6627 | gap 1, overlap 1214146 GGAATCCAGCATAAC TCGATGTCATTCCCGC CTAC GCGGGAATGACAT-GA AACGAAAAATGTCCG rpoC 1218436 - 1214318 - | DNA-directed RNA polymerase subunit beta' TERM 1208 1218546 - 1218530 - R 71 -8.1 -3.31792 | overlap 1218533 TCATCATTGCGAGAA GAATTAC ATA GTAATTC GACAAAGCAATCTCA TERM 1209 1218613 - 1218586 - R 73 -9.2 -2.80113 | gap 1, overlap 1218553 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGAGGTAGTATC TERM 1210 1218642 - 1218660 + r 70 -7.4 -3.75332 | opp_overlap 1218617 1218639 1218642 TCCACAGAAGAACTA GCTCGAAG TTA CTTCAAGC TTTACGTTAAGACAT TERM 1211 1218660 - 1218642 - R 76 -9.6 -3.01243 | opp_overlap 1218642, overlap 1218617 1218639 TCCACAGAAGAACTA GCTCGAAG TTA CTTCAAGC TTTACGTTAAGACAT rpoB 1222760 - 1218639 - | DNA-directed RNA polymerase subunit beta TERM 1212 1218729 - 1218708 - G 74 -7.3 -3.98159 | TATCATAACATTAAA TGATTCAGG AATG CCTGATTCA AAATTATTTTCACCA TERM 1213 1223048 - 1223017 - R 77 -9 -3.2913 | opp_overlap 1223017 1223011, overlap 1223008 1223016 TTTAAACAGTAAAAT TTTTATTGGAATAG CTAC CTATTTCAATAAAA TGCTTATAATTTGCA TERM 1214 1223017 - 1223048 + r 83 -11.2 -2.92144 | opp_overlap 1223008 1223016 1223017, overlap 1223011 TTTAAACAGTAAAAT TTTTATTGGAATAG CTAC CTATTTCAATAAAA TGCTTATAATTTGCA TERM 1215 1223468 - 1223437 - R 77 -3.1 -5.63517 | TTTTTAAACAAAAAA GCCTTATTCAAAT TTAATT ACTAAAATAAGGC TTTTTAGATTTTAAG rplL 1224081 - 1223704 - | 50S ribosomal protein L7/L12 rplJ 1224785 - 1224276 - | 50S ribosomal protein L10 rplA 1225615 - 1224896 - | 50S ribosomal protein L1 TERM 1216 1225376 - 1225397 + g 70 -8.1 -3.05463 | AGCAACTCTTACGGT TTTACCTGT ACCG GCAGGTAAA TTAACTACACCACGT rplK 1226058 - 1225621 - | 50S ribosomal protein L11 nusG 1226842 - 1226264 - | transcription antitermination protein NusG secE 1227154 - 1226858 - | preprotein translocase subunit SecE fusA 1229592 - 1227493 - | elongation factor G rpsG 1230088 - 1229609 - | 30S ribosomal protein S7 rpsL 1230504 - 1230115 - | 30S ribosomal protein S12 yqiY 1231321 - 1230665 - | amino acid ABC transporter permease TERM 1217 1231385 - 1231352 - R 79 -3.3 -5.55855 | overlap 1231353 TTTAAAAAAATAAAA CGATCAAGGTT TGTATCACTCTT AACCTTGATCA TAAATACTACTCTTC RF_1157 1231816 - 1231547 - | hypothetical protein RF_1158 1232372 - 1231926 - | hypothetical protein sdhA 1234597 - 1232807 - | succinate dehydrogenase flavoprotein subunit RF_1160 1234888 - 1234751 - | hypothetical protein sdhD 1235251 - 1234889 - | succinate dehydrogenase hydrophobic membrane anchor protein TERM 1218 1234962 - 1234943 - G 70 -4.4 -4.74285 | opp_overlap 1234955, overlap 1234936 AGTCACAATACAAAA TAATTGTA CTAT TACAATCA ATGTATTACGTAATT RF_1162 1236116 - 1235241 - | nucleotidyltransferase/HEPN domain-containing protein sdhC 1236508 - 1236134 - | succinate dehydrogenase cytochrome b-556 subunit RF_1164 1237224 - 1236685 - | hypothetical protein RF_1165 1237412 - 1237290 - | sulfurtransferase htrA 1239094 - 1237553 - | periplasmic serine protease hflC2 1239956 - 1239096 - | membrane protease subunit stomatin/prohibitin-like protein TERM 1219 1239159 - 1239174 + g 75 -4.8 -5.00895 | CACAAAATTAGTATC TTCTTT CTTT AAAGAA TTTTTATATACTAAA TERM 1220 1239790 - 1239777 - G 74 -3.9 -5.14965 | overlap 1239763 1239782 ACGTTTATCAAAAAA TTCAA CGTT TTGAA TAAACGGGATTTTAA hflK 1241182 - 1240142 - | protease activity modulator HflK TERM 1221 1241136 - 1241146 + g 74 -3.2 -5.44119 | TCAGAATCAAAATCT TTCC ATG GGGA TTTTTTTAAAATCGA TERM 1222 1241567 - 1241552 - g 72 -4.8 -4.77757 | overlap 1241547 GCTCAAAAACCAAAA CATTTT GTAG AAAATG TTAAAAAGATTATTT mrp 1241282 - 1242238 + | Mrp protein RF_1170 1242238 - 1243422 + | hypothetical protein RF_1171 1243410 - 1243682 + | nucleotidyltransferase substrate binding protein RF_1172 1244602 - 1243907 - | tRNA/rRNA methyltransferase ruvC 1245073 - 1244603 - | Holliday junction resolvase TERM 1223 1245011 - 1244980 - G 70 -7.4 -3.61715 | gap 1, opp_overlap 1244980 1244982 1244988 TATTTGTTTTAATAA TACCGC-TAGCTAAA TAT TTCAGCTTTGCGGTA TCCTTTGCAACCACC era 1246084 - 1245203 - | GTP-binding protein Era RF_1175 1246556 - 1246110 - | TPR repeat-containing protein rnc 1247273 - 1246596 - | ribonuclease III lepB 1248073 - 1247273 - | Signal peptidase I TERM 1224 1248104 - 1248121 + r 79 -9.9 -2.80622 | TATGGGTGGATGTCA TTCCTGC GAAA GCAGGAA TCTAGTAAAATATAT nuoF 1249476 - 1248208 - | NADH dehydrogenase I subunit F secF 1250541 - 1249615 - | preprotein translocase subunit SecF TERM 1225 1250934 - 1250922 - g 82 -7.7 -4.40003 | opp_overlap 1250921 TTGGATAAAGATAAA CTTGC CGA GCAAG ATGCTATGCTTGAAC RF_1180 1250739 - 1250975 + | hypothetical protein RF_1181 1251300 - 1251058 - | transposase TERM 1226 1251129 - 1251089 - G 79 -4.8 -5.16237 | gap 2, opp_overlap 1251092 1251117 1251124, overlap 1251093 AATTTTATTAAAAAA TGAGCCATAGCCGCATTCCA ATT TGGTATG-GGC-ATGGACCA TTTTTTGGTCATGTA TERM 1227 1251117 - 1251129 + g 72 -3.3 -5.20216 | opp_overlap 1251093 1251089, overlap 1251092 1251124 CATTCCAATTTGGTA TGGGC ATG GACCA TTTTTTGGTCATGTA RF_1182 1252328 - 1251375 - | transposase RF_1183 1252951 - 1252388 - | (di)nucleoside polyphosphate hydrolase TERM 1228 1253039 - 1253057 + H 73 -8.2 -3.51329 | TTATAAAATTATATT TTACCATG TTT CGTGGTAA TTATCATTGACAATC RF_1184 1253135 - 1253398 + | hypothetical protein tlyC 1254350 - 1253451 - | hemolysin C TERM 1229 1253906 - 1253919 + g 76 -5.3 -5.00616 | overlap 1253900 GAGCTGCAATTATAT GCTTA CGTA TAAGC TTTTTTAAACGACCA TERM 1230 1254343 - 1254353 + g 82 -2.6 -6.01187 | TCTTTTTTTGAAGAT TTTA ACA TAAA TTTTTTTATTTAGTT RF_1186 1254870 - 1254367 - | putative metalloprotease TERM 1231 1255024 - 1255036 + r 74 -6.3 -4.41348 | opp_overlap 1255006 1255024 AGCGAGATAAATCGA GCTTT AAA AAAGC TTTATTTGAAAAAAA TERM 1232 1255063 - 1255053 - R 79 -2.6 -5.78622 | overlap 1255061 TTATTTGAAAAAAAA TTAT CTA ATAA AAAAATCTTTGAAAT TERM 1233 1255070 - 1255083 + r 74 -3.1 -5.44119 | opp_overlap 1255061 ATCTAATAAAAAAAT CTTTG AAAT CAAGG TTTTTTTAGCATGGA lipA 1256235 - 1255189 - | lipoyl synthase glyA 1257497 - 1256232 - | serine hydroxymethyltransferase TERM 1234 1256795 - 1256785 - G 83 -8.2 -4.30161 | opp_overlap 1256786, overlap 1256786 TTAGATAAAATTAAA CCGC CTC GCGG TCCTCGGAGCGTTTT TERM 1235 1257623 - 1257659 + r 87 -7.6 -4.82901 | opp_overlap 1257593 1257633, overlap 1257633 1257653 1257657 CTTGACCACGGTATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTATGGACCCCG TERM 1236 1257633 - 1257649 + r 86 -3.8 -5.80727 | opp_overlap 1257633, overlap 1257623 GTATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT RF_1189 1258404 - 1257757 - | Serine esterase TERM 1237 1258356 - 1258366 + g 75 -8.2 -3.66017 | CTACTAGCTTCTTTG CCGG CTG CCGG TTGCTTTCTACTTCT grxC2 1258887 - 1258573 - | glutaredoxin-like protein grla nth 1258940 - 1259581 + | endonuclease III RF_1192 1260507 - 1259554 - | hypothetical protein RF_1193 1260947 - 1260555 - | hypothetical protein RF_1194 1262254 - 1261415 - | hypothetical protein RF_1195 1262279 - 1263397 + | ABC-type transport systems periplasmic component tatA 1263698 - 1263534 - | twin argininte translocase protein A pgpA 1263776 - 1264372 + | phosphatidylglycerophosphatase A rplU 1264448 - 1264765 + | 50S ribosomal protein L21 rpmA 1264790 - 1265050 + | 50S ribosomal protein L27 lysC 1265565 - 1266770 + | aspartate kinase RF_1201 1267188 - 1267682 + | hypothetical protein TERM 1238 1267780 - 1267766 - g 80 -7.8 -4.26634 | opp_overlap 1267775 AAAATAACTTCAAAA CGACCA AAA TGGCCG ACGCTACTTCCTCTT RF_1202 1267691 - 1268101 + | hypothetical protein RF_1203 1268101 - 1268613 + | hypothetical protein RF_1204 1268717 - 1269670 + | transposase TERM 1239 1269928 - 1269916 - g 72 -3.3 -5.20216 | overlap 1269905 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAACTGGAACA RF_1205 1269745 - 1269987 + | transposase RF_1206 1270434 - 1270048 - | PilT domain-containing protein RF_1207 1270700 - 1270422 - | transcriptional regulator proP5 1272041 - 1270770 - | proline/betaine transporter RF_1209 1272386 - 1272264 - | hypothetical protein RF_1210 1272681 - 1272364 - | hypothetical protein RF_1211 1272887 - 1272684 - | hypothetical protein RF_1212 1273250 - 1273032 - | hypothetical protein RF_1213 1278038 - 1273254 - | NAD-specific glutamate dehydrogenase TERM 1240 1273385 - 1273429 + g 71 -3.1 -5.15167 | opp_overlap 1273388 1273392 1273396, overlap 1273388 1273392 1273396 AATTATTATTATTAT CAATCCATAAATCTAAATCAA TAG TTGTTTTAGATTTATTAATTA TTTTTATTAATAATC TERM 1241 1273392 - 1273422 + g 87 -10 -3.78633 | opp_overlap 1273392 1273388 1273396, overlap 1273388 1273385 1273396 ATTATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 1242 1273422 - 1273392 - G 77 -10 -2.57974 | opp_overlap 1273388 1273385 1273392 1273396, overlap 1273388 1273396 ATTATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 1243 1273396 - 1273418 + g 74 -6.4 -4.43642 | opp_overlap 1273396 1273392 1273388, overlap 1273392 1273388 1273385 TTATCAATCCATAAA TCTAAATCAA TAG TTGTTTTAGA TTTATTAATTATTTT TERM 1244 1276574 - 1276555 - G 71 -2.1 -5.46706 | AGCTTAAAATAAAAA TCTTCAC TCCAAC GTGTAGA GATACGATCTAAATC trmE 1278102 - 1279544 + | tRNA modification GTPase TrmE RF_1215 1279769 - 1281418 + | hypothetical protein TERM 1245 1281544 - 1281528 - f 86 -9.5 -4.0896 | AAACCTCTGCCAAAA GTGAGAA CAT TTCTCAC AAAACCGATGTAATC RF_1216 1282327 - 1282608 + | hypothetical protein RF_1217 1283524 - 1282820 - | hypothetical protein RF_1218 1283819 - 1283490 - | hypothetical protein RF_1219 1284280 - 1283945 - | multidrug ABC transporter RF_1220 1285829 - 1284663 - | hypothetical protein TERM 1246 1285389 - 1285411 + g 100 -15 -4.20918 | opp_overlap 1285389 ATGACTCCAACTCAA TTGTTGCGAC ACT GTCGCAACAA TTTGTTGACCTTGAA TERM 1247 1285411 - 1285389 - G 100 -15 -3.18452 | opp_overlap 1285389 ATGACTCCAACTCAA TTGTTGCGAC ACT GTCGCAACAA TTTGTTGACCTTGAA TERM 1248 1285761 - 1285774 + g 70 -3.9 -4.95854 | overlap 1285761 1285763 TAAATAGATTTTCAA TACTA AAAG TAGTA TTTTTGGCTTTTTTA recA 1285898 - 1286929 + | recombinase A fabG 1286922 - 1287647 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1249 1287735 - 1287704 - f 74 -5.5 -4.78848 | gap 1 CTTTTAAAGATAAAA TGCTATGAATATTT TAAAT AAATATTCATA-CA GTTAAAATAAAGTCT acpP 1287813 - 1288058 + | acyl carrier protein TERM 1250 1288356 - 1288341 - g 74 -6.2 -4.48333 | overlap 1288353 ATAGACTAAGTAAAA TGGATA AATT TATCCA TTACGGAGTAGCAGC fabF 1288094 - 1289374 + | 3-oxoacyl-(acyl carrier protein) synthase II uup 1289523 - 1291364 + | ABC transporter ATP-binding protein Uup RF_1226 1291445 - 1292542 + | hypothetical protein TERM 1251 1292811 - 1292842 + T 76 -9.6 -3.12352 | opp_overlap 1292816, overlap 1292816 AATAATGTAACATTC TAAGAGCTGTAACT ATAT AGTTGCAGCTTTTG TATCATTTTGAATTA TERM 1252 1292816 - 1292837 + T 93 -9.5 -4.6709 | opp_overlap 1292816, overlap 1292811 TGTAACATTCTAAGA GCTGTAACT ATAT AGTTGCAGC TTTTGTATCATTTTG RF_1227 1293425 - 1292823 - | ATPase RF_1228 1293976 - 1293674 - | ATPase TERM 1253 1294167 - 1294137 - R 72 -9.3 -2.66964 | overlap 1294143 TCACCGAGTATACCA TGAAAATTAGAAA TTAAG CTTCTAATTTTCA GTATAAAAAGAAAAA gmk 1294770 - 1294192 - | guanylate kinase TERM 1254 1294768 - 1294778 + g 70 -4 -4.9448 | TTTATTTTTTATTGT CATA TTT TATG TTTTATTTCGTAGGT TERM 1255 1294893 - 1294905 + r 73 -7.7 -3.63305 | opp_overlap 1294892 AATCCTACAAAATTC GCTTG CAT CAAGC TTTACGAATTATGTC RF_1230 1295233 - 1294907 - | hypothetical protein TERM 1256 1295282 - 1295272 - R 73 -4.6 -5.02074 | GTATGGCTCAAAAAA CGCC CTC GACG TCATACCGTGGCTTG TERM 1257 1295353 - 1295317 - R 83 -6.9 -4.87665 | opp_overlap 1295327, overlap 1295320 1295321 1295327 CGGTATCCAGAAAAA TAACTAAAAATATCAAT AAT ATTGATATTTTTAACTG GATCCCGTGAATAAA TERM 1258 1295350 - 1295320 - R 100 -10.8 -4.5448 | opp_overlap 1295327, overlap 1295317 1295321 1295327 TATCCAGAAAAATAA CTAAAAATATCAAT AAT ATTGATATTTTTAA CTGGATCCCGTGAAT TERM 1259 1295349 - 1295321 - R 89 -12.1 -3.31603 | opp_overlap 1295327, overlap 1295320 1295317 1295327 ATCCAGAAAAATAAC TAAAAATATCAAT AAT ATTGATATTTTTA ACTGGATCCCGTGAA TERM 1260 1295343 - 1295327 - R 85 -6.7 -5.10004 | opp_overlap 1295327, overlap 1295321 1295320 1295317 AAAAATAACTAAAAA TATCAAT AAT ATTGATA TTTTTAACTGGATCC TERM 1261 1295327 - 1295343 + r 79 -6.7 -4.67353 | opp_overlap 1295321 1295320 1295317 1295327 AAAAATAACTAAAAA TATCAAT AAT ATTGATA TTTTTAACTGGATCC mreC 1296587 - 1295748 - | rod shape-determining protein MreC mreB 1297630 - 1296590 - | rod shape-determining protein MreB RF_1233 1298929 - 1297841 - | permease TERM 1262 1299299 - 1299285 - R 91 -4.3 -6.04419 | opp_overlap 1299285 AAAATAATAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGATTG TERM 1263 1299322 - 1299338 + r 71 -8.1 -3.31144 | overlap 1299325 CTGGATTGCTTCGTC GAATTAC TAC GTAATTC TTCTCGCAATGAGGG TERM 1264 1299484 - 1299464 - R 95 -5.4 -6.02919 | overlap 1299467 TTATAAATAAAAAAA GACCGAGT AGTAA ACTCGACC TTTTAAACTACTAAA pal 1299991 - 1299521 - | peptidoglycan-associated lipoprotein precursor fabH 1301287 - 1300334 - | 3-oxoacyl-(acyl carrier protein) synthase III rpmF 1301501 - 1301301 - | 50S ribosomal protein L32 RF_1237 1301597 - 1302070 + | hypothetical protein TERM 1265 1302825 - 1302803 - g 84 -6.4 -5.18371 | opp_overlap 1302789 GTCGATAAAACAAAA TATCGATATA CTT TTTATCGATA CGGCAGGCAGGCTTC ftsY 1302255 - 1303166 + | Signal recognition particle-docking protein FtsY TERM 1266 1303257 - 1303229 - f 83 -10.3 -3.18429 | overlap 1303233 GAAAATTTTGACGAA GCAATCTCATGCC AAA GTCCTGAGATTGC CACGCACCTTTCAGT TERM 1267 1303393 - 1303418 + G 71 -7.5 -3.38314 | opp_overlap 1303383, overlap 1303394 1303396 CAACAGCCTTTAACT TCACCGAAAGG CGAG CCTGTCGGTGC TCTTTACGGCTTCGC TERM 1268 1303394 - 1303417 + G 82 -11 -2.62667 | opp_overlap 1303383, overlap 1303393 1303396 AACAGCCTTTAACTT CACCGAAAGG CGAG CCTGTCGGTG CTCTTTACGGCTTCG polA 1303312 - 1306080 + | DNA polymerase I TERM 1269 1306256 - 1306273 + F 86 -11.3 -2.6342 | overlap 1306251 AAAAACTCGATGTCA TTCCCGC GAAA GCGGGAA TCCATTACTTTAAAA RF_1240 1306384 - 1306725 + | HicB family protein RF_1241 1306766 - 1307317 + | S-adenosylmethionine synthetase MetK RF_1242 1307508 - 1307882 + | S-adenosylmethionine synthetase MetK RF_1243 1308002 - 1310332 + | hypothetical protein TERM 1270 1310491 - 1310479 - T 91 -3.4 -6.25741 | opp_overlap 1310479 AAATAATAAAAAAAA TCTG TAAAT CAGA ATTTTTTACTGGATA dnaE 1314225 - 1310602 - | DNA polymerase III subunit alpha TERM 1271 1311612 - 1311638 + g 72 -5.9 -4.39989 | gap 1, overlap 1311617 TTCTGCTACCCTTTA TGTCATTCCCGC AAAA GCGGGAATC-CA TTTTCATACTTTCAT TERM 1272 1311617 - 1311634 + g 86 -11.3 -2.78897 | overlap 1311612 CTACCCTTTATGTCA TTCCCGC AAAA GCGGGAA TCCATTTTCATACTT udg 1315715 - 1314369 - | UDP-glucose 6-dehydrogenase TERM 1273 1316739 - 1316727 - g 76 -3.5 -5.43487 | opp_overlap 1316727 1316727, overlap 1316720 AAATTAGATAAAAAA TTTTT AAA AAAAA ATATTTTAGTAGAAG TERM 1274 1317109 - 1317087 - g 71 -7.8 -3.46873 | overlap 1317085 GCAAATTCAATAATA GAGCTAATAA TTC CTATTAGCCC AAATATCCCTAATAG TERM 1275 1317840 - 1317826 - g 70 -4.4 -4.87807 | opp_overlap 1317828 CTAATATATCAAAAA TATTTT TAA AAAATA ATATAATTCTAGGTA TERM 1276 1318428 - 1318414 - g 72 -5.7 -4.42238 | CTATTGTAACTAAAA TACCG GTAGT CGGTA AAATATTTTCCAAAG RF_1246 1315965 - 1318478 + | hypothetical protein ampG3 1318488 - 1319753 + | AmpG protein TERM 1277 1319971 - 1319952 - g 87 -8.6 -4.25283 | gap 1 AGTTTTTTATTAAAA CCGCTT-GC TAA GCTAAGCGG TGATACGGTACGAAA tatC 1319820 - 1320575 + | Sec-independent protein translocase protein TatC TERM 1278 1321556 - 1321544 - g 79 -2.7 -5.75342 | overlap 1321545 1321555 TTGCGGCAAAAAAAA CCTAT GAT ATAGA AGTATGGCTTCCGGG serS 1320553 - 1321830 + | seryl-tRNA synthetase TERM 1279 1321826 - 1321811 - f 84 -6.2 -5.252 | opp_overlap 1321810 GAGGGTTACAAAAAA TCACTA CATA TAGTGA ATAATTGTTTATTAA TERM 1280 1321972 - 1322000 + F 91 -7.7 -5.1675 | opp_overlap 1321979, overlap 1321973 GACCACGGAGTCCAG TTTATAATACTAA AAA TTAGTATTGTAAG TTTTTTGCTGGATAC TERM 1281 1321973 - 1321999 + F 80 -9 -3.69327 | opp_overlap 1321979, overlap 1321972 ACCACGGAGTCCAGT TTATAATACTAA AAA TTAGTATTGTAA GTTTTTTGCTGGATA virB4_2 1322075 - 1324507 + | type IV secretion/conjugal transfer ATPase TERM 1282 1324678 - 1324662 - f 77 -3.8 -5.47914 | opp_overlap 1324662, overlap 1324655 AAAAACGATAAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATCC RF_1251 1324896 - 1328396 + | hypothetical protein TERM 1283 1328596 - 1328614 + G 88 -11.8 -2.95884 | opp_overlap 1328593 GTGAATATTATACTT GCTTTCTC ATT GAGAAAGC TATGTCCCTTGATAA terC 1328532 - 1329305 + | tellurium resistance protein TerC RF_1253 1329349 - 1330062 + | hypothetical protein RF_1254 1330230 - 1331759 + | hypothetical protein TERM 1284 1332153 - 1332169 + G 74 -5.9 -4.7173 | GTGCAGGACTTATGA TTTTGCT TGG AGCAGAA TTTTTAGCTATGATG nuoJ 1332023 - 1332640 + | NADH dehydrogenase subunit J nuoK 1332633 - 1332947 + | NADH dehydrogenase subunit K nuoL1 1332949 - 1334886 + | NADH dehydrogenase subunit L TERM 1285 1334979 - 1334948 - f 71 -8.2 -3.23598 | gap 1, overlap 1334976 GAAGTAATTGACGAA GCAATCTCA-GAAGT ATT ATTTCATGAGATTGC CGTGCGGTCTTCGAC TERM 1286 1335003 - 1334976 - f 81 -10.6 -2.80113 | gap 1, overlap 1334948 TATTATTTCATGAGA TTGCCGTGCGGTC TTC GACCGCTCG-CAA TGACGGAAGAAACCC TERM 1287 1336164 - 1336176 + G 76 -3.4 -5.37345 | AGCAAGTAAAATGCC TGTG CTTGC CACA TTTTTTATGATTGCA nuoM 1335037 - 1336518 + | NADH dehydrogenase subunit M ccmA 1336540 - 1337265 + | cytochrome c biogenesis protein CcmA nuoI 1338166 - 1337687 - | NADH dehydrogenase subunit I TERM 1288 1338288 - 1338311 + r 83 -8.4 -4.31379 | opp_overlap 1338267 1338288 ATTTAACAAAATAAA CATATAAAAA CTTG TTTTTATATG TTTTGCTGGATTCCT TERM 1289 1338311 - 1338288 - R 90 -8.4 -4.88795 | opp_overlap 1338288, overlap 1338267 ATTTAACAAAATAAA CATATAAAAA CTTG TTTTTATATG TTTTGCTGGATTCCT nuoH 1339371 - 1338352 - | NADH dehydrogenase subunit H TERM 1290 1338446 - 1338416 - G 76 -6.2 -4.6951 | ACCACCCAAAATAAA GTTAGAGGTAAAAA TAC TTTCCACCCCAAAC GCATTAGTTGGTCAT TERM 1291 1339420 - 1339466 + r 77 -8.6 -3.66017 | opp_overlap 1339421, overlap 1339421 1339464 GAGGAGATGCGAAGC ATCGACGCGGCAATCTCAGGAC TTT GGCACGAGATTGCTTCGTCGAA TTACTTTGTAATTCT TERM 1292 1339465 - 1339421 - R 87 -12.1 -2.74741 | opp_overlap 1339420 1339421 1339464 AGGAGATGCGAAGCA TCGACGCGGCAATCTCAGGAC TTT GGCACGAGATTGCTTCGTCGA ATTACTTTGTAATTC TERM 1293 1339421 - 1339465 + r 87 -12.1 -2.78526 | opp_overlap 1339421, overlap 1339420 1339464 AGGAGATGCGAAGCA TCGACGCGGCAATCTCAGGAC TTT GGCACGAGATTGCTTCGTCGA ATTACTTTGTAATTC TERM 1294 1339464 - 1339480 + r 71 -8.1 -3.31144 | opp_overlap 1339421, overlap 1339421 1339420 1339467 CGAGATTGCTTCGTC GAATTAC TTT GTAATTC TTCTCGCAATGACGG nuoG 1341555 - 1339540 - | NADH dehydrogenase subunit G RF_1263 1341947 - 1341558 - | hypothetical protein acnA 1344698 - 1342062 - | aconitate hydratase TERM 1295 1342349 - 1342327 - G 74 -7.1 -3.98282 | CCCATACCAACTAAA TTTGAACGA TGTAT TCGCTCAAA GCTCTCGGCAATCAC atpC 1345258 - 1344920 - | F0F1 ATP synthase subunit epsilon TERM 1296 1345371 - 1345344 - R 73 -9.2 -2.80113 | gap 1, opp_overlap 1345339, overlap 1345311 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTATGGTTA atpD 1346916 - 1345390 - | F0F1 ATP synthase subunit beta TERM 1297 1346879 - 1346865 - G 74 -7.2 -4.11394 | opp_overlap 1346878 ACGTCATTGCGAAAA GAAACT GCA AGTTTC GACGAAGCAATCTCA atpG 1347811 - 1346945 - | F0F1 ATP synthase subunit gamma atpA 1349523 - 1347991 - | F0F1 ATP synthase subunit alpha atpH 1350265 - 1349711 - | F0F1 ATP synthase subunit delta TERM 1298 1350234 - 1350208 - G 74 -8.8 -3.24747 | overlap 1350211 1350213 CTTGTATATTATCAA CCATAGCGTTAT TAA ATAACGCTACCG CATAATTCTCGATTA TERM 1299 1350231 - 1350211 - G 86 -11.3 -2.80988 | overlap 1350208 1350213 GTATATTATCAACCA TAGCGTTAT TAA ATAACGCTA CCGCATAATTCTCGA TERM 1300 1350229 - 1350213 - G 75 -9.5 -2.94962 | overlap 1350211 1350208 ATATTATCAACCATA GCGTTAT TAA ATAACGC TACCGCATAATTCTC lpdA1 1351641 - 1350262 - | dihydrolipoamide dehydrogenase TERM 1301 1351193 - 1351203 + g 71 -6.8 -4.13014 | ATTTGCTTGCCGTCA GGCT CAA AGCC TTTTAAAACTCTAGA RF_1271 1352211 - 1351783 - | Strees induced DNA-binding protein RF_1272 1352561 - 1352283 - | cytotoxic translational repressor of toxin-antitoxin system RelE RF_1273 1352770 - 1352552 - | hypothetical protein RF_1274 1352962 - 1354068 + | hypothetical protein TERM 1302 1354157 - 1354142 - T 85 -4.8 -5.61881 | opp_overlap 1354142 1354139 CCTCAAAAATAAAAA TTGAAA TTTA TTTCAA TTCTTTATTTATCAA blaD 1354949 - 1354149 - | Beta-lactamase class D mrcA 1357498 - 1355126 - | 1A family penicillin-binding protein RF_1277 1358773 - 1357514 - | ATPase TERM 1303 1358469 - 1358449 - G 72 -2.5 -5.4505 | overlap 1358451 CCGGGTAAGAAAAAA TATTAGCCG ATC CGGTTAAGA GGAAACGTCCCGGCC miaB 1360179 - 1358842 - | tRNA-i(6)A37 thiotransferase enzyme MiaB RF_1279 1360986 - 1360783 - | nucleotidyltransferase/HEPN domain-containing protein RF_1280 1361659 - 1360955 - | nucleotidyltransferase/HEPN domain-containing protein RF_1281 1362509 - 1361673 - | hypothetical protein RF_1282 1363244 - 1362741 - | hypothetical protein TERM 1304 1363079 - 1363067 - GR 76 -5.5 -5.06414 | opp_overlap 1363050 CTTTTTTAACAAAAA GCCAT TCT ACGGC AGATTTAGTGGTTGG kefB 1364940 - 1363213 - | glutathione-regulated potassium-efflux system protein KefB TERM 1305 1364372 - 1364382 + gr 79 -8.2 -4.11394 | opp_overlap 1364372 1364371 AATATTGTAAGTAAG GCCG TTA CGGC TTTTAAGAGTGCAAT TERM 1306 1364820 - 1364834 + gr 72 -8.6 -3.05596 | opp_overlap 1364808 1364807 AACCGTGATCACCTA TTGCAG CTC CTGCAA TTAAGTAACCAAGTA RF_1284 1365263 - 1364937 - | Iojap-related protein bolA2 1365429 - 1365668 + | morphology/transcriptional regulatory protein BolA TERM 1307 1365933 - 1365949 + F 83 -9.5 -3.84389 | TTTCTGATTGCATCA GTCAACA ATA TGTTGAC TTCTATTCTTACATA RF_1286 1366000 - 1366248 + | cytotoxic translational repressor of toxin-antitoxin system RelE RF_1287 1366257 - 1366616 + | Phage-related transcriptional regulator TERM 1308 1366720 - 1366698 - T 86 -10 -3.57651 | GCTTAGATTATATAA GGAGTAAAAT TTA ATTTTACCCC CCACCAATTATATAT RF_1288 1367186 - 1366740 - | hypothetical protein TERM 1309 1367281 - 1367271 - H 72 -2.6 -5.40014 | AAACAACAATAAAAA TAAA TTT TTTA TAAGTAAACAGTAAT RF_1289 1367446 - 1367886 + | hypothetical protein sca13 1374658 - 1368059 - | cell surface antigen-like protein Sca13 TERM 1310 1371126 - 1371102 - G 74 -8.7 -3.31144 | CTCCTACTGTTATAA CCGGTAAAT ACAGCTG ATTTACCGG CATCAATAGTAATAT TERM 1311 1372120 - 1372140 + g 77 -7.6 -3.97741 | opp_overlap 1372122, overlap 1372117 CGGTACTCGTTATAT TACCGGTA ATAAG TGCCGGTA TATTATTTTTTGTAT sca9 1376708 - 1375035 - | cell surface antigen-like protein Sca9 TERM 1312 1376646 - 1376663 + g 78 -2 -5.83226 | gap 1 CATTGCCGCCGCCGA GGC-TGT CGTAA ACATGCC TTTTTTTATTAAATT TERM 1313 1376854 - 1376912 + H 100 -20.1 -3.15366 | TCTTAATATTTTCGC TAGGTTCTGTGAACATTTCTAATTAAT TTGCT ATTTTTTAGAGATGTTCACAGAACCTA TGTTGCACTTTTAAA TERM 1314 1377151 - 1377165 + H 76 -3.6 -5.38549 | opp_overlap 1377145, overlap 1377145 TCCTAAATATAAAAA GTAATT ATA AGTTAC TTTTTCTTGTTTAAA infA 1377524 - 1377739 + | translation initiation factor IF-1 maf 1377751 - 1378362 + | Maf-like protein TERM 1315 1378479 - 1378425 - T 76 -9.4 -3.14344 | GAGTTGCGTTAGCAA CGACGCGGCAATCTCATAAGAT AATATTAAAAA AACTCCTGAGATTGCCGCACCG GCATAAATGCCGGCT dksA 1378952 - 1378521 - | DnaK suppressor protein xerC 1379977 - 1379060 - | site-specific tyrosine recombinase XerC TERM 1316 1379889 - 1379916 + g 70 -7.2 -3.57263 | opp_overlap 1379888 1379893, overlap 1379893 AGGTCATTATTATAG GAAATTACTGTA TGAT TAGAGTAATTTC TTTGCAAATCGAGGT TERM 1317 1380121 - 1380106 - H 84 -3.4 -5.72118 | opp_overlap 1380106 AAAAAACACAAAAAA TTTTTT AAGT AAAAAA TTTAATTTATTTTAG RF_1296 1380148 - 1380612 + | phasin family protein RF_1297 1381427 - 1380825 - | phospholipase D (PLD) superfamily protein TERM 1318 1381551 - 1381524 - R 73 -9.2 -2.80113 | gap 1, overlap 1381496 1381492 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGAAATACGCCA phaC 1383324 - 1381573 - | Poly(3-hydroxyalkanoate) synthetase ubiD 1385127 - 1383649 - | UbiD family decarboxylase surA 1386843 - 1385269 - | parvulin-like peptidyl-prolyl isomerase TERM 1319 1385355 - 1385365 + g 75 -2.6 -5.66684 | overlap 1385349 CAGAATTTTTAATAT TATA TAT TATA TTTTTTTCTGAATTG TERM 1320 1386943 - 1386916 - R 72 -9.2 -2.78935 | gap 1, overlap 1386888 1386884 AGATGTTTGACGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGGCTCTCAAGA TERM 1321 1386969 - 1387013 + r 90 -8.1 -4.91459 | opp_overlap 1386979, overlap 1386974 1386979 CAAGACTACATTATA AAGCAAAAAAGCCTATATAGT CAA ACTATATAGGCTTTTATATTG TTTTTGTAGATGTTC TERM 1322 1386974 - 1387008 + r 100 -14.6 -3.86816 | opp_overlap 1386979, overlap 1386969 1386979 CTACATTATAAAGCA AAAAAGCCTATATAGT CAA ACTATATAGGCTTTTA TATTGTTTTTGTAGA TERM 1323 1386979 - 1387003 + r 100 -14.5 -4.90321 | opp_overlap 1386979, overlap 1386974 1386969 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTATATTGTTTTT TERM 1324 1387003 - 1386979 - R 100 -14.5 -5.42514 | opp_overlap 1386974 1386969 1386979 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTATATTGTTTTT TERM 1325 1387150 - 1387123 - R 73 -9.2 -2.80113 | gap 1 TATTATTTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGAGCTAGAGTA RF_1301 1387571 - 1387254 - | Outer memberane protein rOmpA RF_1302 1388082 - 1387513 - | Outer memberane protein rOmpA TERM 1326 1388895 - 1388871 - g 77 -9.3 -3.29704 | opp_overlap 1388894, overlap 1388869 GTGTTAGTAAATATA TCGGCAAAACT TGT AGTATCGCCGA GCGTCGCCGCACCTT RF_1303 1388526 - 1389035 + | hypothetical protein RF_1304 1389986 - 1389066 - | Outer memberane protein rOmpA TERM 1327 1389260 - 1389270 + g 74 -4 -5.27335 | overlap 1389257 CGGTACTTGTAACAC TATC GGT GATA TTTTTATTTGCACCA RF_1305 1391782 - 1390010 - | Outer memberane protein rOmpA TERM 1328 1392071 - 1392055 - R 71 -8.1 -3.31144 | overlap 1392058 TCGTCATTGCGAGAA GAATTAC ATA GTAATTC GACGAAGCAATCCAG TERM 1329 1392094 - 1392108 + r 91 -4.3 -6.04419 | opp_overlap 1392094 CAATCCAGTTAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT RF_1306 1393569 - 1392427 - | ankyrin repeat-containing protein TERM 1330 1392737 - 1392751 + g 79 -7.2 -4.4648 | opp_overlap 1392750, overlap 1392750 TCATCAGCATATATT GCTTTT TGT AAAAGC TTTTGTCCTAAAGCT ftsK 1396221 - 1393984 - | cell division protein FtsK-like protein TERM 1331 1395737 - 1395722 - G 72 -4.8 -4.90079 | opp_overlap 1395722 1395717, overlap 1395717 AGCTTAATAATAAAA TTACTT AAAG AAGTAA ATTTAATTTCAAGTA TERM 1332 1396116 - 1396106 - G 78 -6.8 -4.45664 | opp_overlap 1396104 1396106 GTAACCGAATTAAAA GACG GAT CGTC TATATTATATGACGT fic 1397238 - 1396264 - | Fic map 1397362 - 1398141 + | methionine aminopeptidase TERM 1333 1398215 - 1398199 - f 73 -8.1 -3.44051 | opp_overlap 1398179, overlap 1398202 CCGTCATTACGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG radC 1398522 - 1398989 + | DNA repair protein RadC mraY2 1399093 - 1400076 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RF_1312 1400073 - 1400396 + | hypothetical protein TERM 1334 1400650 - 1400614 - T 87 -7.6 -4.84359 | opp_overlap 1400624, overlap 1400624 CTAGGTCCATAAAAA CAATAAAAAATACTAA TAATT TTAGTATTTTTAACTG GATACCGTGGACAAG TERM 1335 1400640 - 1400624 - T 86 -3.8 -5.80727 | opp_overlap 1400624, overlap 1400614 AAAAACAATAAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATAC TERM 1336 1400799 - 1400761 - T 100 -12.1 -4.06678 | gap 1, opp_overlap 1400769, overlap 1400769 AGGCAGGTACACAAA CA-AAAAAAGGAGTCTTT AATT AAAGACTCCTTTTTCGTG TTAATCGCTTATAAA TERM 1337 1400769 - 1400790 + T 100 -11.7 -4.89233 | opp_overlap 1400761 1400769 ACACAAACAAAAAAA GGAGTCTTT AATT AAAGACTCC TTTTTCGTGTTAATC TERM 1338 1400790 - 1400769 - T 100 -11.7 -6.04953 | opp_overlap 1400769, overlap 1400761 ACACAAACAAAAAAA GGAGTCTTT AATT AAAGACTCC TTTTTCGTGTTAATC RF_1313 1401696 - 1400827 - | hypothetical protein TERM 1339 1401891 - 1401905 + r 91 -4.3 -6.04419 | opp_overlap 1401891 CAATCCAGTAAAAGA TTCTG ATTTA CAGAA TTTTTTTATTATTTT RF_1314 1402677 - 1401994 - | putative outer surface protein TERM 1340 1402716 - 1402729 + r 72 -2.5 -5.35354 | ATCTTTAATGGCATA TATAA CATA TTATA TTTTTTAGTTCTATA fdxA 1403131 - 1402802 - | ferredoxin RF_1316 1403479 - 1403162 - | transcriptional regulator RF_1317 1403812 - 1403492 - | hypothetical protein TERM 1341 1403925 - 1403941 + r 79 -5.1 -5.1417 | opp_overlap 1403914 1403925 AGAAGCAAATAACAA CTACTCG CAG CTAGTAG TTTTTGATTTTGTCG ccmC 1404627 - 1403935 - | Heme exporter protein C RF_1319 1405323 - 1404844 - | cytosine deaminase RF_1320 1406224 - 1405304 - | cation diffusion facilitator family transporter TERM 1342 1406855 - 1406838 - g 76 -3.4 -5.4593 | overlap 1406853 GGAAAACAACAAAAA GCATAC GGTAAT GCATGC CGCCAACCTGACGGA omp 1406412 - 1406891 + | 17 kDa surface antigen precursor RF_1322 1407055 - 1407519 + | hypothetical protein TERM 1343 1407660 - 1407624 - f 91 -7.6 -5.31456 | opp_overlap 1407626 1407635, overlap 1407627 1407635 GCAATCCAGAAAAAA TAATAAAAAAATTCTG ATTTA CAGAATTTTTTTACTG GATTGCTTCGTCGAA TERM 1344 1407657 - 1407627 - f 100 -11.5 -4.73105 | opp_overlap 1407626 1407635, overlap 1407624 1407635 ATCCAGAAAAAATAA TAAAAAAATTCTG ATTTA CAGAATTTTTTTA CTGGATTGCTTCGTC TERM 1345 1407649 - 1407635 - f 91 -4.3 -6.04419 | opp_overlap 1407626 1407635, overlap 1407627 1407624 AAAATAATAAAAAAA TTCTG ATTTA CAGAA TTTTTTTACTGGATT TERM 1346 1407635 - 1407649 + F 83 -4.3 -5.54894 | opp_overlap 1407635 1407627 1407624, overlap 1407626 AAAATAATAAAAAAA TTCTG ATTTA CAGAA TTTTTTTACTGGATT znuC 1407755 - 1408456 + | Zinc ABC transporter ATP-binding protein uvrA 1411326 - 1408459 - | excinuclease ABC subunit A TERM 1347 1408927 - 1408941 + g 74 -5.7 -4.59774 | opp_overlap 1408926 CATCATCAAAATATC GGCAA TAGAT TTGCC TTTATATTTTATTTC TERM 1348 1409293 - 1409315 + g 74 -9.2 -3.02966 | overlap 1409292 AAATACTTTGCTAGT CGTCTCTAAA TGC TTTAGAGCCG CTTTATATAGAGTAT TERM 1349 1409601 - 1409591 - G 70 -8.2 -3.02144 | CGACCGCCGTGAATA CCGG CTC CCGG CCCTATATCGATAAT TERM 1350 1409918 - 1409932 + g 81 -4.3 -5.43974 | TTGAGTATACGCTCA GCAAT AAATA ATTGC TTTTTATTTAATTTT TERM 1351 1410531 - 1410521 - G 83 -8.2 -4.20696 | TCAGTAAGCTGAAAA CCGG ATA CCGG ACAAGAATATTTTTC TERM 1352 1410954 - 1410944 - G 70 -8.2 -3.06492 | CTATGTATCGGAAGA CCGG TTG CCGG AGAGTAAGGAATACC ssb 1411431 - 1411889 + | single-strand DNA-binding protein RF_1326 1411901 - 1412731 + | DAP2-like protein TERM 1353 1413060 - 1413070 + G 70 -4.6 -4.77986 | TATCTTTAGACCGCT CGGG GCT CTCG TTTTTGGATATTTAG RF_1327 1412842 - 1413765 + | MFS type sugar transporter RF_1328 1413889 - 1414182 + | MFS type sugar transporter RF_1329 1414517 - 1414209 - | hypothetical protein RF_1330 1415693 - 1414710 - | hypothetical protein TERM 1354 1415662 - 1415683 + g 71 -2.3 -5.42862 | overlap 1415663 1415666 TCATTGTTATTAAGA TTAAGAGTA GTTA TGCTCTTAC TTTTTTTCAAAATCT RF_1331 1416061 - 1415741 - | hypothetical protein RF_1332 1416816 - 1417133 + | hypothetical protein TERM 1355 1417250 - 1417266 + F 86 -3.8 -5.77677 | opp_overlap 1417250, overlap 1417243 GGATCCAGTTAAAAA TACTAA ATCTA TTAGTA TTTTTTATTATTTTC htpG 1417388 - 1419253 + | heat shock protein 90 hemA 1419438 - 1420682 + | 5-aminolevulinate synthase TERM 1356 1420705 - 1420719 + F 71 -8.6 -2.97123 | overlap 1420700 TCATTGTGAGGAATT TGCAAC TTT GTTGCA TGGTTCGTTTTATGT TERM 1357 1420806 - 1420836 + F 88 -8.6 -4.52873 | opp_overlap 1420813, overlap 1420813 GACCACGGGATCCAG TTAAAAATACTAAT AAT ATTAGTATTTTTTA TTATTTTTATGGACC TERM 1358 1420813 - 1420829 + F 100 -6.7 -5.80727 | opp_overlap 1420813, overlap 1420806 GGATCCAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTTATTATTTTT TERM 1359 1420829 - 1420813 - f 79 -6.7 -4.67353 | opp_overlap 1420813 1420806 GGATCCAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTTATTATTTTT TERM 1360 1420928 - 1420907 - f 84 -10.1 -3.53276 | opp_overlap 1420906 1420909, overlap 1420905 ATCCACACAACAAGA CCTTCCCGC ATAG GCGGGAATG ATATAATATCCATGC TERM 1361 1420909 - 1420926 + F 86 -11.3 -2.68612 | opp_overlap 1420907 1420905, overlap 1420906 CCACACAACAAGACC TTCCCGC ATAG GCGGGAA TGATATAATATCCAT RF_1335 1421041 - 1421460 + | hypothetical protein TERM 1362 1421499 - 1421520 + F 95 -11.7 -3.61764 | opp_overlap 1421499 CTATATGCCAGCAAA GGTGAGTTT TGCG AAACTCACC TTTAGCAATTCCTAA TERM 1363 1421520 - 1421499 - f 95 -11.7 -3.75665 | opp_overlap 1421499 CTATATGCCAGCAAA GGTGAGTTT TGCG AAACTCACC TTTAGCAATTCCTAA TERM 1364 1422317 - 1422291 - g 77 -7.5 -4.07885 | gap 1 TACTTTTCCTGAAAA TTACCATGCTAA AGAT TTAGCA-GGTAA AGATGCTCGTTTTGC tig 1421629 - 1422966 + | trigger factor TERM 1365 1423067 - 1423081 + T 77 -4.3 -5.18357 | opp_overlap 1423059 1423067 AAAAGATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG TERM 1366 1423081 - 1423067 - T 83 -4.3 -5.69023 | opp_overlap 1423067, overlap 1423059 AAAAGATTAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGATTG obgE 1424180 - 1423188 - | GTPase ObgE gltA 1425699 - 1424392 - | type II citrate synthase TERM 1367 1425576 - 1425566 - G 78 -6.8 -4.35682 | TCATAAGTAAAACAA TCGG CTT CCGA AGATACCCTGCTTAT TERM 1368 1425963 - 1425951 - R 87 -7.7 -4.91712 | opp_overlap 1425950 1425951 GCTAATTTATAAAAA GCTTG TTC CAAGC ATTCTAGTACGTTAT RF_1339 1426338 - 1426057 - | transcriptional regulator RF_1340 1427206 - 1426418 - | uracil-DNA glycosylase TERM 1369 1427574 - 1427563 - g 70 -4.4 -4.74706 | CTGAAGAGCTAAAAA TTGC AGCA GCAA ATATAGCACTTGATA RF_1341 1427223 - 1428380 + | ribosomal large subunit pseudouridine synthase D RF_1342 1428449 - 1428685 + | hypothetical protein RF_1343 1428669 - 1428938 + | growth inhibitor TERM 1370 1429421 - 1429431 + G 71 -8.2 -3.22475 | overlap 1429419 AGATTGCTTCGTCTA CGCC TAT GGCG TCTTCTCGCAATGAC trmB 1429027 - 1430610 + | bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase RF_1345 1431661 - 1430576 - | putative translation factor protein TERM 1371 1430632 - 1430658 + g 90 -12.4 -3.09516 | overlap 1430634 CCCCTATATTCACTC GAGGTATAGGAG CAA CTGCTATACCTC TTACATCATGAGAGG TERM 1372 1430634 - 1430656 + g 74 -9.2 -3.10796 | overlap 1430632 CCTATATTCACTCGA GGTATAGGAG CAA CTGCTATACC TCTTACATCATGAGA TERM 1373 1431606 - 1431590 - G 85 -6.7 -5.10004 | opp_overlap 1431590, overlap 1431584 AAAAACAACTAAAAA TATCAAT AAT ATTGATA TTTTAACTGGATCCC TERM 1374 1431590 - 1431606 + g 74 -6.7 -4.19817 | opp_overlap 1431590 1431584 AAAAACAACTAAAAA TATCAAT AAT ATTGATA TTTTAACTGGATCCC glyS 1433684 - 1431690 - | glycyl-tRNA synthetase subunit beta TERM 1375 1432736 - 1432748 + g 72 -4.8 -4.90917 | opp_overlap 1432736 AAGCATCCGAAAGAC GTGC AGATA GCAC TTTTTCATTACCTTT glyQ 1434546 - 1433677 - | glycyl-tRNA synthetase subunit alpha TERM 1376 1434879 - 1434852 - R 73 -9.2 -2.80443 | gap 1, overlap 1434828 GGATATTTGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGAAATAGCATA RF_1348 1435535 - 1434906 - | hypothetical protein proP6 1436785 - 1435538 - | proline/betaine transporter TERM 1377 1436620 - 1436610 - G 75 -8.2 -3.70622 | opp_overlap 1436607, overlap 1436586 1436608 TTACCGAAAATAATA CCGC CGA GCGG TCGTACTATAAAGCC RF_1350 1437958 - 1437005 - | hypothetical protein RF_1351 1438606 - 1437968 - | hypothetical protein TERM 1378 1438671 - 1438655 - R 71 -8.1 -3.31144 | overlap 1438658 1438669 TCGTCATTGCGAGAA GAATTAC ATA GTAATTC GACGAAGCAATCTCA RF_1352 1440327 - 1438756 - | hypothetical protein TERM 1379 1439087 - 1439074 - G 71 -6.7 -4.14598 | opp_overlap 1439073 GTTAAGTAAATCAAA CGGTA GCGG TACCG GTGCTTCTAGTAATT TERM 1380 1440212 - 1440183 - G 71 -3 -5.15167 | TATTATCAAGAAAAA TACTAAGAAATA CACCTT TATTACCTAGTA ACACCGCGATCTTTT TERM 1381 1440224 - 1440245 + g 71 -3.1 -5.1417 | opp_overlap 1440244, overlap 1440226 AGTAACACCGCGATC TTTTTTCTT TTGA AAGAAAATA TTTTTAATTTTGTAA TERM 1382 1440272 - 1440246 - G 71 -6.8 -4.05678 | overlap 1440244 TTTTGAAAGAAAATA TTTTTAATTTTG TAA CAAAATTAACAA AACGCAATTTGATCG TERM 1383 1442202 - 1442212 + G 71 -6.8 -4.08307 | CAAAAAGGTTCTTTA GTCG CTC CGAC TTATTTACGTTTTGA alaS 1440429 - 1443065 + | alanyl-tRNA synthetase TERM 1384 1443199 - 1443163 - T 87 -7.6 -4.82901 | opp_overlap 1443173, overlap 1443173 TGGGGTCCATAAAAA CAATAAAAAATACTAA TAATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 1385 1443189 - 1443173 - T 86 -3.8 -5.80727 | opp_overlap 1443173, overlap 1443163 AAAAACAATAAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATCC TERM 1386 1443317 - 1443303 - T 88 -7.2 -5.0133 | opp_overlap 1443303 GAGCTTTTTAAAAAA TCTTGT AGA ACAAGA TTTTTTAGCCTGGAT TERM 1387 1443303 - 1443317 + T 88 -7.2 -5.05782 | opp_overlap 1443303 GAGCTTTTTAAAAAA TCTTGT AGA ACAAGA TTTTTTAGCCTGGAT TERM 1388 1443880 - 1443901 + T 72 -2.4 -5.4593 | overlap 1443881 1443895 TTTTGTTATTAGTGA TTTTTTGA CTAATT TCAAAAAG TTTTTGTTGTTTTAC RF_1354 1444319 - 1443948 - | hypothetical protein TERM 1389 1444932 - 1444962 + r 77 -7.8 -4.06562 | opp_overlap 1444936, overlap 1444933 1444936 GTAAAAATTGTTTTG ATAATGCTTTTTAA TAT TTGAAAAGCATTAA TTTGTGATTCCGGTT TERM 1390 1444933 - 1444961 + r 87 -11.3 -3.03214 | opp_overlap 1444936, overlap 1444932 1444936 TAAAAATTGTTTTGA TAATGCTTTTTAA TAT TTGAAAAGCATTA ATTTGTGATTCCGGT RF_1355 1445596 - 1444910 - | hypothetical protein TERM 1391 1444936 - 1444958 + g 77 -8.6 -3.65415 | opp_overlap 1444936, overlap 1444933 1444932 AAATTGTTTTGATAA TGCTTTTTAA TAT TTGAAAAGCA TTAATTTGTGATTCC TERM 1392 1445155 - 1445172 + g 74 -5.7 -4.68511 | CAACCTCCGTAGCTT GTATTTT TAAA AAAATAC TTTCTTTGTATTCCA truA 1446470 - 1445733 - | tRNA pseudouridine synthase A rpoD 1448782 - 1446875 - | RNA polymerase sigma factor RpoD dnaG 1450614 - 1448827 - | DNA primase sec59 1451233 - 1450619 - | dolichol kinase greA 1451285 - 1451863 + | transcription elongation factor GreA pntA2 1452375 - 1451977 - | NAD(P) transhydrogenase subunit alpha pntA1 1453496 - 1452372 - | NAD(P) transhydrogenase subunit alpha RF_1363 1453565 - 1454188 + | hypothetical protein TERM 1393 1454356 - 1454340 - f 71 -8.1 -3.31144 | opp_overlap 1454355, overlap 1454343 1454354 1454355 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCTCA TERM 1394 1454406 - 1454355 - f 77 -10.2 -2.5194 | opp_overlap 1454355, overlap 1454340 1454354 1454363 GAATTACGTAGTAAT TCGACGAAGCAATCTCAGGAATCA ATAT TACTTCATGAGATTGCCGCGTCGC TTCGCTCCTCGCAAT TERM 1395 1454398 - 1454363 - f 71 -8.4 -3.19157 | opp_overlap 1454355, overlap 1454355 1454354 TAGTAATTCGACGAA GCAATCTCAGGAATCA ATAT TACTTCATGAGATTGC CGCGTCGCTTCGCTC TERM 1396 1454579 - 1454600 + G 74 -7.3 -4.11371 | opp_overlap 1454578 1454579 1454581 TATACTATTTTAAAT GATAGGCTC ACCG GAGGCTATC TTTTAACAGGTATTA TERM 1397 1454877 - 1454893 + G 79 -8.7 -3.77607 | opp_overlap 1454891, overlap 1454889 TCGATGAAGTGCATA TGCTCTC TAA GGGAGCA TTTAATGCACTTCTT TERM 1398 1455817 - 1455803 - g 86 -2.9 -6.11229 | opp_overlap 1455803 AGCAAAATAAAAAAA CAAAT AGAAG ATTTG TTAGCTGCTTTTACT dnaX 1454420 - 1455985 + | DNA polymerase III subunits gamma and tau RF_1365 1456004 - 1456327 + | hypothetical protein TERM 1399 1456317 - 1456334 + T 75 -4.8 -5.04325 | opp_overlap 1456317 1456318, overlap 1456318 CGCCTGGTTTCAAAA TGCCGT TTTAAT ACGGCG TTTTTATGGTTTAAA RF_1366 1457147 - 1456452 - | hypothetical protein ampC 1458280 - 1457162 - | beta-lactamase AmpC TERM 1400 1457559 - 1457542 - G 71 -5.5 -4.67353 | CTATCGATGCAAAAA TACCGGC AGAT GCAGGTA CCGTCTTTGGGTAGT TERM 1401 1457911 - 1457930 + g 71 -3 -5.13473 | opp_overlap 1457914 TGGTATGGCTTAAAA TATTATTA AGAC TAATAGTA TTTTTTAAGTATGGT TERM 1402 1458006 - 1458016 + g 71 -6.8 -4.08216 | opp_overlap 1457994 1458013 AATGCAATTGCCGTT GCTG AAA CAGC TTTTGAAACCGATGC RF_1368 1458444 - 1458322 - | cytotoxic translational repressor of toxin-antitoxin system RelE TERM 1403 1458435 - 1458423 - G 72 -9.1 -2.69799 | overlap 1458420 CTACTTCATACACTA GTCGG TAA CCGAC TGACCTCAACTTTAT RF_1369 1459009 - 1458758 - | antitoxin of toxin-antitoxin system StbD glnQ 1459801 - 1459079 - | glutamine ABC transporter ATP-binding protein phnP 1460569 - 1459805 - | beta-lactamase superfamily hydrolase RF_1372 1460581 - 1461261 + | hypothetical protein dinJ 1461306 - 1461569 + | DNA-damage-inducible protein J TERM 1404 1462063 - 1462083 + G 72 -9.1 -2.75311 | overlap 1462062 1462059 TATTTATTCTGTTAC CGGTAATAA CGG TTATTGCCG TGATCTATATCTATA RF_1374 1461843 - 1462952 + | permease RF_1375 1463744 - 1463280 - | DNA polymerase III subunit chi TERM 1405 1464002 - 1463975 - R 77 -9.2 -3.24365 | gap 1, overlap 1463973 GGATATTTGACAAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGACTTGGTATC dapE 1465178 - 1464033 - | succinyl-diaminopimelate desuccinylase RF_1377 1465784 - 1465305 - | Type I restriction-modification system methyltransferase subunit RF_1378 1466570 - 1466259 - | Type I restriction-modification system methyltransferase subunit TERM 1406 1466320 - 1466305 - G 71 -7.6 -3.38699 | opp_overlap 1466304 1466305, overlap 1466303 TTTAGAAATAATATA TTAGCG AATT CGCTAA ATCTTTCTATACCGG RF_1379 1466845 - 1466636 - | hypothetical protein RF_1380 1467046 - 1467258 + | hypothetical protein TERM 1407 1467249 - 1467260 + F 72 -5.8 -4.40123 | opp_overlap 1467248 AGAGTTGGTTAATAC GGTC TCAT GACC TTCTTCTTTTTATTA nhaA 1467365 - 1468225 + | Na+/H+ antiporter NhaA RF_1382 1469007 - 1468483 - | hypothetical protein lipB 1469633 - 1469004 - | lipoyltransferase TERM 1408 1469784 - 1469758 - R 82 -9.5 -3.68569 | gap 1 GTATCCACGCAACAA TGCC-TTCCCGC GTAG GCGGGAATGACA TAAAACGAGCCATGA ampD 1470594 - 1469848 - | N-acetylmuramoyl-L-alanine amidase TERM 1409 1470692 - 1470719 + r 73 -9.2 -2.80113 | gap 1, overlap 1470716 CCTGTTTATCCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA rpsP 1471468 - 1471133 - | 30S ribosomal protein S16 rpmG 1471652 - 1471482 - | 50S ribosomal protein L33 TERM 1410 1471771 - 1471798 + r 74 -9.2 -3.13592 | gap 1, overlap 1471769 1471784 AAGAGAGATGCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTAGTTTTAATGTC mutL 1473704 - 1471875 - | DNA mismatch repair protein RF_1388 1473853 - 1473701 - | hypothetical protein TERM 1411 1474112 - 1474139 + H 73 -9.2 -2.80113 | gap 1 CCAGCTACATCGTCG TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATAAAATAATA RF_1389 1474238 - 1474630 + | oxidoreductase TERM 1412 1474847 - 1474833 - g 82 -8.6 -3.9941 | TCGTGCAGAATCAAA TAGCAG ATA CTGCTA AAGCTAGACATATCA RF_1390 1474721 - 1475026 + | oxidoreductase TERM 1413 1475072 - 1475043 - f 70 -8.1 -3.06261 | opp_overlap 1475037 TTTTAATTCTTAATA TTTGTTAGTTATT GAGA AATAACTAACAAT AAAAACTTCTTGCAA RF_1391 1475146 - 1475976 + | hypothetical protein RF_1392 1476331 - 1476089 - | transposase TERM 1414 1476160 - 1476120 - G 79 -4.8 -5.16237 | gap 2, opp_overlap 1476123 1476148 1476155, overlap 1476124 AATTTTATTAAAAAA TGAGCCATAGCCGCATTCCA ATT TGGTATG-GGC-ATGGACCA TTTTTTGGTCATGTA TERM 1415 1476148 - 1476160 + g 72 -3.3 -5.20216 | opp_overlap 1476124 1476120, overlap 1476123 1476155 CATTCCAATTTGGTA TGGGC ATG GACCA TTTTTTGGTCATGTA RF_1393 1477359 - 1476406 - | transposase RF_1394 1478201 - 1477380 - | TPR TERM 1416 1478272 - 1478238 - H 82 -2.6 -5.97979 | gap 1, opp_overlap 1478243, overlap 1478243 1478245 ATAATAATAAAAAAA TTA-AATATTATAAA GGTTAT TTTATAATATTATAA ATTACACTTTATAAA proP7 1478340 - 1479611 + | proline/betaine transporter TERM 1417 1479710 - 1479700 - g 71 -5.4 -4.61868 | TATGCACAGACAAAA GGTT TAA AACC GGCTAAGTTTGTACG TERM 1418 1480040 - 1480023 - g 72 -4.9 -4.88918 | opp_overlap 1480028, overlap 1480024 1480028 CTATCCGAAAGAAAA CGAAACT GCAA AGTTTCA TGCAGCTTTTAAAGA hemF 1479595 - 1480434 + | coproporphyrinogen III oxidase RF_1397 1481550 - 1480726 - | prophage antirepressor TERM 1419 1481550 - 1481564 + g 71 -2.2 -5.3236 | CATCGCTATTATTCA TAATGT TCC ATATTA TTTTTTATGAATTAT TERM 1420 1482040 - 1482026 - R 80 -5.8 -5.09259 | TACTTCAAAAGAAAA TTTAGA AAT TCTAAA AATTGAGATAGCAGA TERM 1421 1482240 - 1482224 - R 76 -9.4 -3.0094 | CTGTATTTATAGATA CCGTGG TCAAG CCACGG TGACAGAACAGATTA RF_1398 1482697 - 1482260 - | hypothetical protein hemH 1483755 - 1482709 - | ferrochelatase hemE 1484752 - 1483712 - | uroporphyrinogen decarboxylase SEQUENCE gi|67459793|ref|NC_007110.1| Rickettsia felis URRWXCal2 plasmid pRF, complete sequence (length 62829) RF_p01 998 - 669 - | transposase TERM 1 1140 - 1152 + H 84 -6.3 -5.252 | opp_overlap 1140 1135 GTCAAGAAAGTAAAA CGTAA TTT TTACG TTTTTTATAAACATA TERM 2 1152 - 1140 - H 76 -6.3 -4.67942 | opp_overlap 1140, overlap 1135 GTCAAGAAAGTAAAA CGTAA TTT TTACG TTTTTTATAAACATA TERM 3 1229 - 1208 - H 81 -3.1 -5.86465 | opp_overlap 1210, overlap 1198 1210 1228 AATAATATAAAAAAA TTTCTATAT AAGA ATATAGATA ATATTGATATTAGTC RF_p02 1306 - 1674 + | hypothetical protein TERM 4 1688 - 1707 + F 78 -9.4 -3.2058 | opp_overlap 1688, overlap 1686 1684 1683 1688 AACTTTTTCATAAAA CGTATTAC AATT GTAATACG TATGTATTATTAATG TERM 5 1707 - 1688 - f 91 -9.4 -4.37658 | opp_overlap 1688 1686 1684 1683 1688 AACTTTTTCATAAAA CGTATTAC AATT GTAATACG TATGTATTATTAATG TERM 6 2428 - 2415 - g 70 -3.9 -5.0538 | TTTTATTCTAAAAAA TTTGT ATGA ACAAA AAAATTCTCAAACTA parA1 1810 - 2625 + | chromosome partitioning ParA family protein RF_p04 2618 - 2938 + | hypothetical protein TERM 7 2942 - 2980 + F 77 -9.2 -3.3341 | opp_overlap 2942 2939 2948 2975, overlap 2944 2948 TCTTCCTCATAACAA TGTAAATATTACATGTGT AAT ACATAGGTAATATTTATA TTATAAAAAGTTTTT TERM 8 2944 - 2978 + F 78 -9.6 -3.22668 | opp_overlap 2942 2939 2948 2975, overlap 2942 2948 TTCCTCATAACAATG TAAATATTACATGTGT AAT ACATAGGTAATATTTA TATTATAAAAAGTTT TERM 9 3320 - 3277 - f 78 -6.9 -4.3534 | overlap 3279 3281 GCGGAAGGAGTAAAA TATAGGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACCCACA AGAATGAAGATATTT TERM 10 3318 - 3279 - f 72 -7.3 -3.77927 | overlap 3277 3281 GGAAGGAGTAAAATA TAGGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACCCA CAAGAATGAAGATAT TERM 11 3316 - 3281 - f 71 -7.7 -3.46345 | overlap 3279 3277 AAGGAGTAAAATATA GGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACC CACAAGAATGAAGAT TERM 12 3507 - 3484 - g 78 -9 -3.44792 | gap 1, overlap 3482 3480 CCAAGTGAAAATATA GGTATACATGG GTT CCATG-ATACC ACAAAGAATCAACCA TERM 13 4256 - 4244 - g 73 -7.7 -3.6767 | overlap 4242 AATTACACAGAAATA GCCTT ACT AAGGC ATTACAGACTCTAGA TERM 14 4698 - 4686 - g 85 -9.1 -4.08394 | opp_overlap 4686 AGAGTTTTTGGAAAA CGAGC TTT GCTCG TTTCCATCTGAATCT TERM 15 4686 - 4698 + G 80 -9.1 -3.72141 | opp_overlap 4686 AGAGTTTTTGGAAAA CGAGC TTT GCTCG TTTCCATCTGAATCT RF_p05 3442 - 5766 + | hypothetical protein RF_p06 5754 - 6455 + | Type I site-specific restriction-modification system, R (restriction) subunit and related helicases TERM 16 6741 - 6766 + G 70 -7.1 -3.65353 | gap 1 TTGTGGTACTGGAGG TATGCTTATTAC ATC GTA-TAAGCATA TTTACGATAATTTAA TERM 17 7264 - 7291 + G 76 -7.2 -4.21954 | overlap 7286 AATTTGTATATATGT TTAGTGATATTA TTAA TATTATCACTAA TTCTTTGTGTGTTGC RF_p07 6487 - 7485 + | Type I restriction-modification system methyltransferase subunit RF_p08 7674 - 7444 - | hypothetical protein RF_p09 7925 - 8308 + | hypothetical protein RF_p10 8903 - 8388 - | hypothetical protein TERM 18 9011 - 9045 + r 72 -7.4 -3.84585 | opp_overlap 9019, overlap 9008 9012 9014 AATAAAACCCTATAT TTAGTATATTACCA CATTTCA TGGTAATATACTAC TATTTTATGATCAAT TERM 19 9012 - 9044 + r 83 -10.9 -2.90028 | opp_overlap 9019, overlap 9011 9008 9014 ATAAAACCCTATATT TAGTATATTACCA CATTTCA TGGTAATATACTA CTATTTTATGATCAA TERM 20 9014 - 9042 + r 74 -9.1 -2.99458 | opp_overlap 9019, overlap 9012 9011 9008 AAAACCCTATATTTA GTATATTACCA CATTTCA TGGTAATATAC TACTATTTTATGATC TERM 21 9328 - 9352 + r 100 -10 -5.36018 | opp_overlap 9327 9326 AACCAATTAAATATT CTGTGCCTAC TTAAT GTAGGCTCAG TTTCTTTTTTTTGAT pat2 11135 - 9525 - | patatin-like phospholipase TERM 22 10846 - 10856 + g 74 -6.8 -4.17023 | TATTTAGCTATGTTT GAGC CTT GCTC TTTTGGGATAGTTAG RF_p12 12182 - 11337 - | hypothetical protein TERM 23 11597 - 11578 - G 73 -8 -3.44552 | opp_overlap 11573 11577 11578, overlap 11573 11576 ATTCTACCAATAATA CTATTATC ATGT GATAATAG CTTCTGTTGACTCTT tdk 12955 - 12272 - | thymidylate kinase RF_p14 13202 - 13011 - | ankyrin repeat-containing protein TERM 24 13274 - 13248 - R 72 -8.8 -3.14982 | opp_overlap 13244, overlap 13246 AAACTTATGAAGATA GTGTGGTAGC TATATGC ACTACCACAC AGGCATTGGTTCTTA RF_p15 14072 - 13287 - | hypothetical protein TERM 25 14203 - 14174 - R 82 -10.1 -3.18268 | gap 1, overlap 14172 14176 GTGTAACTAAAACTA TATGAGAGGGGCTA TGC TAGCCCC-CTCATG CTCCCCCGCTATATC TERM 26 14201 - 14176 - R 100 -12.7 -3.14708 | gap 1, overlap 14174 14172 GTAACTAAAACTATA TGAGAGGGGCTA TGC TAGCCCC-CTCA TGCTCCCCCGCTATA RF_p16 14831 - 14298 - | putative Zn-dependent protease TERM 27 14438 - 14460 + g 80 -9.2 -3.72236 | overlap 14436 CTACCCTCTTAAAGC CCGCAAGCAT ATT ATGTTTGTGG TATATTTTTTCTGAA TERM 28 14760 - 14770 + g 74 -4 -5.25656 | AAAGTTAATGCCTTG CTTA AAA TAAG TTTTTTGCTCCTTTT RF_p17 15629 - 14865 - | TPR repeat-containing protein TERM 29 15277 - 15291 + g 74 -8.6 -3.26449 | opp_overlap 15276 TTGTTTAAATACACG TCCTGA AAA TCAGGA TTAAGTTCTATAACC RF_p18 16934 - 15675 - | TPR repeat-containing protein TERM 30 16164 - 16180 + g 79 -6.6 -4.71776 | GTTGATGATTGCCAT CTCTAG CTTGT CTAGAG TTTTATTAAATATTG TERM 31 16959 - 17000 + r 100 -9.4 -5.8901 | TGGGTTGTTATTTTA CCGGTAGATGCTCAAACT TTGGTC AGGGCGAGCGTCTACCGG TTTTTTCTTTTCTGT RF_p19 18517 - 17327 - | hypothetical protein TERM 32 18404 - 18392 - GR 80 -9.1 -3.72141 | opp_overlap 18392 AGATTCAGATGGAAA CGAGC AAA GCTCG TTTTCCAAAAACTTT TERM 33 18392 - 18404 + gr 85 -9.1 -4.0896 | opp_overlap 18392 AGATTCAGATGGAAA CGAGC AAA GCTCG TTTTCCAAAAACTTT TERM 34 18404 - 18416 + gr 90 -4.9 -5.79526 | AAACGAGCAAAGCTC GTTTT CCA AAAAC TTTTTTTTACCATCT RF_p20 18995 - 18456 - | hypothetical protein TERM 35 18730 - 18717 - GR 71 -5.3 -4.7254 | opp_overlap 18729 ATCTTTTATGAAAAA TCTCT GTTT AGAGA TAAAATTATTATCTT TERM 36 19028 - 19051 + r 77 -9 -3.20403 | gap 1, overlap 19027 19025 TGATTGATTCTTTGT GGTAT-CATGG AAC CCATGTATACC TATATTCTCACTTGG RF_p21 19780 - 19286 - | hypothetical protein RF_p22 20037 - 19789 - | hypothetical protein parA2 20675 - 20040 - | plasmid stability protein ParA TERM 37 20972 - 20931 - H 100 -13.8 -5.8901 | ACAGAAAAGAAAAAA CCGGTAGACGCTCACCCT GACCAA AGTTTGAGCATCTACCGG TAAAATAACAACCCA RF_p24 20997 - 21536 + | hypothetical protein sca12 22243 - 23673 + | cell surface antigen-like protein Sca12 lon 23813 - 26260 + | ATP-dependent protease La TERM 38 27118 - 27108 - g 83 -6.8 -4.84182 | opp_overlap 27107 27108 CTAAAAAAGAAGAAA CTGC GGA GCAG ATTGTTAATTCTGAT RF_p27 26366 - 28165 + | hypothetical protein RF_p28 28180 - 28854 + | hypothetical protein RF_p29 29534 - 28872 - | hypothetical protein RF_p30 30449 - 31201 + | transposase TERM 39 31447 - 31487 + G 79 -4.8 -5.16237 | gap 2, opp_overlap 31436 31447 31449, overlap 31451 TACATGACCAAAAAA TGGTCCAT-GCC-CATACCA AAT TGGAATGCGGCTATGGCTCA TTTTTTAATAAAATT TERM 40 31459 - 31447 - g 72 -3.3 -5.20216 | opp_overlap 31447 31451, overlap 31436 31449 TACATGACCAAAAAA TGGTC CAT GCCCA TACCAAATTGGAATG RF_p31 31276 - 31518 + | transposase TERM 41 31648 - 31674 + F 84 -11 -3.16931 | opp_overlap 31653, overlap 31653 CTAACCATTCTTTTT GGAAAGTAGTAG ATA CTACTACTTTCA TCTATATCTTTGATT TERM 42 31669 - 31653 - f 80 -9.5 -3.53224 | opp_overlap 31653 31648 CATTCTTTTTGGAAA GTAGTAG ATA CTACTAC TTTCATCTATATCTT TERM 43 31653 - 31669 + F 83 -9.5 -3.92869 | opp_overlap 31653, overlap 31648 CATTCTTTTTGGAAA GTAGTAG ATA CTACTAC TTTCATCTATATCTT TERM 44 32268 - 32286 + G 73 -9 -2.88849 | opp_overlap 32271, overlap 32236 32232 32267 GAGATACTGCCGATA TGATTAAC TTA GTTAATCA GTTTGCTAATATAGG tnpR 32042 - 32482 + | TnpR resolvase RF_p33 33067 - 32624 - | hypothetical protein RF_p34 34365 - 33232 - | DNA polymerase III subunit epsilon parB 35149 - 34391 - | ParB-like nuclease domain-containing protein TERM 45 35239 - 35193 - H 100 -11.8 -3.87373 | opp_overlap 35198 35206, overlap 35194 CATACGTGGCAGAAA GTTCTGCTACCAACTAAAATGT CTT ACATTTTAGTTGGTAGCTATAT ATCTGTAAATAAGTG TERM 46 35238 - 35194 - H 100 -15.3 -2.92102 | opp_overlap 35198 35206, overlap 35193 ATACGTGGCAGAAAG TTCTGCTACCAACTAAAATGT CTT ACATTTTAGTTGGTAGCTATA TATCTGTAAATAAGT TERM 47 35198 - 35234 + H 100 -22.7 -3.08465 | opp_overlap 35194 35193, overlap 35206 GTGGCAGAAAGTTCT GCTACCAACTAAAATGT CTT ACATTTTAGTTGGTAGC TATATATCTGTAAAT TERM 48 35206 - 35226 + H 82 -9.9 -3.21622 | opp_overlap 35194 35193, overlap 35198 AAGTTCTGCTACCAA CTAAAATGT CTT ACATTTTAG TTGGTAGCTATATAT TERM 49 36096 - 36108 + G 71 -7.7 -3.51232 | opp_overlap 36093 36096, overlap 36093 CAGTATAAAGAATTA CGTAC ACA GTACG TTAATTTACAAGAAC RF_p36 35415 - 36155 + | hypothetical protein traD_Ti 36666 - 36409 - | conjugative transfer protein TraD_Ti RF_p38 36628 - 36909 + | conjugative transfer protein TraA_Ti RF_p39 36852 - 39575 + | conjugative transfer protein TraA_Ti RF_p40 39597 - 40670 + | hypothetical protein RF_p41 40689 - 41741 + | transposase TERM 50 41765 - 41736 - T 100 -15.3 -3.54919 | opp_overlap 41736 AACGATCTCCTTAAA TCTTAACTTCTAC AGCT GTAGAAGTTAAGA TTGTCTAAATCGGTT TERM 51 41736 - 41765 + T 100 -15.3 -3.52668 | opp_overlap 41736 AACGATCTCCTTAAA TCTTAACTTCTAC AGCT GTAGAAGTTAAGA TTGTCTAAATCGGTT RF_p42 42408 - 41791 - | ankyrin repeat-containing protein TERM 52 42444 - 42433 - R 77 -3 -5.58454 | CTGATATTAAAAAAA TTGT TTAA ACAA AGAATATAATTTGCC RF_p43 43240 - 42473 - | putative conjugative transfer protein TraD_F TERM 53 42564 - 42578 + g 79 -10 -2.8881 | overlap 42563 AGAGACATGATTTCA GCAGGT AAT ACCTGC ATCTTCTTTTGTTCT TERM 54 43145 - 43157 + g 80 -7.7 -4.15832 | opp_overlap 43144 TACGCCAGTAGAAGT CTCAG GAG CTGAG TTATTTATCATTCCT RF_p44 44176 - 43247 - | putative conjugative transfer protein TraD_F RF_p45 44466 - 44188 - | hypothetical protein RF_p46 45554 - 44502 - | hypothetical protein RF_p47 46060 - 45593 - | conjugative transfer protein TraG RF_p48 47270 - 46401 - | transposase TERM 55 46871 - 46885 + g 74 -6.4 -4.39426 | opp_overlap 46870 46881, overlap 46881 CATTAAGCATATCAG CAGCAG TAA TTGCTG TTTTATCAGCATATA RF_p49 47484 - 47293 - | integrase RF_p50 48324 - 47554 - | hypothetical protein hspP2 48950 - 48459 - | small heat shock protein hspP1 49584 - 48994 - | small heat shock protein TERM 56 49151 - 49164 + g 74 -5.3 -4.76233 | opp_overlap 49151 CGTTTTGTATAATCA TCTGA AGCT TCAGA TTTATTATTTTGTTC RF_p53 50183 - 49641 - | DNA polymerase III, epsilon subunit-like protein RF_p54 50902 - 50210 - | transposase RF_p55 51477 - 50971 - | transposase RF_p56 52964 - 51891 - | hyaluronidase TERM 57 52745 - 52755 + g 74 -4 -5.30155 | opp_overlap 52745, overlap 52737 CTTTTTCTTCAAAAG TATC ACG GATA TTTTTTAATTCCTGA TERM 58 53444 - 53456 + r 79 -3.4 -5.626 | CTTCTCAACGAGCCA CTGA AAAAA TCAG TTTTTTTGTAAGCTA TERM 59 53661 - 53684 + r 80 -7.6 -4.29327 | overlap 53673 53675 CATTTTATTATAGTG TAGTGGTTTA GCTA TAAATCACTA TTTATGTTAATTATA RF_p57 54460 - 53723 - | transposase TERM 60 54167 - 54180 + g 77 -3.9 -5.46276 | AGTTAGGTTGCTAGT GATTA TTTT TAATC TTTTTTCTATCTCTT RF_p58 54756 - 54457 - | transposase TERM 61 54717 - 54731 + g 74 -5.8 -4.65838 | opp_overlap 54716 54721, overlap 54721 TTTTATCTACACCAT GAATTT GAA AAATTC TTTTTGCAATATCTA RF_p59 55455 - 55165 - | hypothetical protein RF_p60 55707 - 55504 - | hypothetical protein TERM 62 55662 - 55648 - G 71 -7.8 -3.41979 | opp_overlap 55646, overlap 55646 55644 GGAATAAATAATAGA GGCAGT ATG ACCGCC ACTGTCTGATCCAGC TERM 63 55736 - 55753 + r 77 -9.9 -2.73542 | opp_overlap 55721 TCCGAGTACCTAGGT CAAAGGG ATAT CCCTTTG TACTTAGGGGTTAGG RF_p61 56879 - 55764 - | transposase RF_p62 58055 - 56892 - | hypothetical protein RF_p63 58682 - 58107 - | hypothetical protein RF_p64 58768 - 59076 + | transposase TERM 64 59163 - 59145 - g 85 -3.2 -5.96219 | TAGTTATAAAAAAAA CTTTTC TTCATCC GAAAAG GGATATTGGTCAAGG RF_p65 59110 - 59523 + | hypothetical protein TERM 65 60232 - 60197 - f 74 -9.2 -3.05715 | opp_overlap 60192 60188 60222 AATTGCGTGATTTAA GTTTAGTCTCATAAAG TATA CTTTATGAGACTAATA AAATACTTGTCTCAA TERM 66 60433 - 60416 - g 82 -8.5 -3.97307 | opp_overlap 60413 60416 TTGATGGAACAAGAA GTGCATT AAAA AATGCAC TGGATTATGTACGTG RF_p66 60292 - 60840 + | site-specific recombinase TERM 67 61001 - 60987 - f 72 -8.6 -3.12327 | overlap 60985 GTGTGAGATGTAATA GCCTTA GCT TAAGGC ACATGATACCTAATG RF_p67 61171 - 61350 + | transposase RF_p68 62689 - 61733 - | hypothetical protein SEQUENCE gi|67459862|ref|NC_007111.1| Rickettsia felis URRWXCal2 plasmid pRFdelta, complete sequence (length 39263) RF_pd01 998 - 669 - | transposase TERM 1 1152 - 1140 - H 76 -6.3 -4.67942 | opp_overlap 1140, overlap 1135 GTCAAGAAAGTAAAA CGTAA TTT TTACG TTTTTTATAAACATA TERM 2 1140 - 1152 + H 84 -6.3 -5.252 | opp_overlap 1140 1135 GTCAAGAAAGTAAAA CGTAA TTT TTACG TTTTTTATAAACATA TERM 3 1229 - 1208 - H 81 -3.1 -5.86465 | opp_overlap 1210, overlap 1198 1210 1228 AATAATATAAAAAAA TTTCTATAT AAGA ATATAGATA ATATTGATATTAGTC RF_pd02 1306 - 1674 + | hypothetical protein TERM 4 1688 - 1707 + F 78 -9.4 -3.2058 | opp_overlap 1688, overlap 1686 1684 1683 1688 AACTTTTTCATAAAA CGTATTAC AATT GTAATACG TATGTATTATTAATG TERM 5 1707 - 1688 - f 91 -9.4 -4.37658 | opp_overlap 1688 1686 1684 1683 1688 AACTTTTTCATAAAA CGTATTAC AATT GTAATACG TATGTATTATTAATG TERM 6 2428 - 2415 - g 70 -3.9 -5.0538 | TTTTATTCTAAAAAA TTTGT ATGA ACAAA AAAATTCTCAAACTA parA1 1810 - 2625 + | chromosome partitioning ParA family protein RF_pd04 2618 - 2938 + | hypothetical protein TERM 7 2942 - 2980 + F 77 -9.2 -3.3341 | opp_overlap 2942 2939 2948 2975, overlap 2944 2948 TCTTCCTCATAACAA TGTAAATATTACATGTGT AAT ACATAGGTAATATTTATA TTATAAAAAGTTTTT TERM 8 2944 - 2978 + F 78 -9.6 -3.22668 | opp_overlap 2942 2939 2948 2975, overlap 2942 2948 TTCCTCATAACAATG TAAATATTACATGTGT AAT ACATAGGTAATATTTA TATTATAAAAAGTTT TERM 9 3320 - 3277 - f 78 -6.9 -4.3534 | overlap 3279 3281 GCGGAAGGAGTAAAA TATAGGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACCCACA AGAATGAAGATATTT TERM 10 3318 - 3279 - f 72 -7.3 -3.77927 | overlap 3277 3281 GGAAGGAGTAAAATA TAGGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACCCA CAAGAATGAAGATAT TERM 11 3316 - 3281 - f 71 -7.7 -3.46345 | overlap 3279 3277 AAGGAGTAAAATATA GGAGTTAAGTTTCTA AATAGA TAGAAACCCAACACC CACAAGAATGAAGAT TERM 12 3507 - 3484 - g 78 -9 -3.44792 | gap 1, overlap 3482 3480 CCAAGTGAAAATATA GGTATACATGG GTT CCATG-ATACC ACAAAGAATCAACCA TERM 13 4256 - 4244 - g 73 -7.7 -3.6767 | overlap 4242 AATTACACAGAAATA GCCTT ACT AAGGC ATTACAGACTCTAGA TERM 14 4686 - 4698 + G 80 -9.1 -3.72141 | opp_overlap 4686 AGAGTTTTTGGAAAA CGAGC TTT GCTCG TTTCCATCTGAATCT TERM 15 4698 - 4686 - g 85 -9.1 -4.08394 | opp_overlap 4686 AGAGTTTTTGGAAAA CGAGC TTT GCTCG TTTCCATCTGAATCT RF_pd05 3442 - 5766 + | hypothetical protein RF_pd06 5754 - 6455 + | Type I site-specific restriction-modification system, R (restriction) subunit and related helicases TERM 16 6741 - 6766 + G 70 -7.1 -3.65353 | gap 1 TTGTGGTACTGGAGG TATGCTTATTAC ATC GTA-TAAGCATA TTTACGATAATTTAA TERM 17 7264 - 7291 + G 76 -7.2 -4.21954 | overlap 7286 AATTTGTATATATGT TTAGTGATATTA TTAA TATTATCACTAA TTCTTTGTGTGTTGC RF_pd07 6487 - 7485 + | Type I restriction-modification system methyltransferase subunit RF_pd08 7674 - 7444 - | hypothetical protein RF_pd09 7925 - 8308 + | hypothetical protein RF_pd10 8903 - 8388 - | hypothetical protein TERM 18 9011 - 9045 + r 72 -7.4 -3.84585 | opp_overlap 9019, overlap 9008 9012 9014 AATAAAACCCTATAT TTAGTATATTACCA CATTTCA TGGTAATATACTAC TATTTTATGATCAAT TERM 19 9012 - 9044 + r 83 -10.9 -2.90028 | opp_overlap 9019, overlap 9011 9008 9014 ATAAAACCCTATATT TAGTATATTACCA CATTTCA TGGTAATATACTA CTATTTTATGATCAA TERM 20 9014 - 9042 + r 74 -9.1 -2.99458 | opp_overlap 9019, overlap 9012 9011 9008 AAAACCCTATATTTA GTATATTACCA CATTTCA TGGTAATATAC TACTATTTTATGATC TERM 21 9328 - 9352 + r 100 -10 -5.36018 | opp_overlap 9327 9326 AACCAATTAAATATT CTGTGCCTAC TTAAT GTAGGCTCAG TTTCTTTTTTTTGAT pat2 11135 - 9525 - | patatin-like phospholipase TERM 22 10846 - 10856 + g 74 -6.8 -4.17023 | TATTTAGCTATGTTT GAGC CTT GCTC TTTTGGGATAGTTAG RF_pd12 12182 - 11337 - | hypothetical protein TERM 23 11597 - 11578 - G 73 -8 -3.44552 | opp_overlap 11573 11578 11577, overlap 11573 11576 ATTCTACCAATAATA CTATTATC ATGT GATAATAG CTTCTGTTGACTCTT tdk 12955 - 12272 - | thymidylate kinase RF_pd14 13211 - 13011 - | ankyrin repeat-containing protein RF_pd39 13286 - 16009 + | conjugative transfer protein TraA_Ti RF_pd40 16031 - 17104 + | hypothetical protein RF_pd41 17123 - 18175 + | transposase TERM 24 18170 - 18199 + T 100 -15.3 -3.52668 | opp_overlap 18170 AACGATCTCCTTAAA TCTTAACTTCTAC AGCT GTAGAAGTTAAGA TTGTCTAAATCGGTT TERM 25 18199 - 18170 - T 100 -15.3 -3.54919 | opp_overlap 18170 AACGATCTCCTTAAA TCTTAACTTCTAC AGCT GTAGAAGTTAAGA TTGTCTAAATCGGTT RF_pd42 18842 - 18225 - | ankyrin repeat-containing protein TERM 26 18878 - 18867 - R 77 -3 -5.58454 | CTGATATTAAAAAAA TTGT TTAA ACAA AGAATATAATTTGCC RF_pd43 19674 - 18907 - | putative conjugative transfer protein TraD_F TERM 27 18998 - 19012 + g 79 -10 -2.8881 | overlap 18997 AGAGACATGATTTCA GCAGGT AAT ACCTGC ATCTTCTTTTGTTCT TERM 28 19579 - 19591 + g 80 -7.7 -4.15832 | opp_overlap 19578 TACGCCAGTAGAAGT CTCAG GAG CTGAG TTATTTATCATTCCT RF_pd44 20610 - 19681 - | putative conjugative transfer protein TraD_F RF_pd45 20900 - 20622 - | hypothetical protein RF_pd46 21988 - 20936 - | hypothetical protein RF_pd47 22494 - 22027 - | conjugative transfer protein TraG RF_pd48 23704 - 22835 - | transposase TERM 29 23305 - 23319 + g 74 -6.4 -4.39426 | opp_overlap 23304 23315, overlap 23315 CATTAAGCATATCAG CAGCAG TAA TTGCTG TTTTATCAGCATATA RF_pd49 23918 - 23727 - | integrase RF_pd50 24758 - 23988 - | hypothetical protein hspP2 25384 - 24893 - | small heat shock protein hspP1 26018 - 25428 - | small heat shock protein TERM 30 25585 - 25598 + g 74 -5.3 -4.76233 | opp_overlap 25585 CGTTTTGTATAATCA TCTGA AGCT TCAGA TTTATTATTTTGTTC RF_pd53 26617 - 26075 - | DNA polymerase III, epsilon subunit-like protein RF_pd54 27336 - 26644 - | transposase RF_pd55 27911 - 27405 - | transposase RF_pd56 29398 - 28325 - | hyaluronidase TERM 31 29179 - 29189 + g 74 -4 -5.30155 | opp_overlap 29179, overlap 29171 CTTTTTCTTCAAAAG TATC ACG GATA TTTTTTAATTCCTGA TERM 32 29878 - 29890 + r 79 -3.4 -5.626 | CTTCTCAACGAGCCA CTGA AAAAA TCAG TTTTTTTGTAAGCTA TERM 33 30095 - 30118 + r 80 -7.6 -4.29327 | overlap 30107 30109 CATTTTATTATAGTG TAGTGGTTTA GCTA TAAATCACTA TTTATGTTAATTATA RF_pd57 30894 - 30157 - | transposase TERM 34 30601 - 30614 + g 77 -3.9 -5.46276 | AGTTAGGTTGCTAGT GATTA TTTT TAATC TTTTTTCTATCTCTT RF_pd58 31190 - 30891 - | transposase TERM 35 31151 - 31165 + g 74 -5.8 -4.65838 | opp_overlap 31150 31155, overlap 31155 TTTTATCTACACCAT GAATTT GAA AAATTC TTTTTGCAATATCTA RF_pd59 31889 - 31599 - | hypothetical protein RF_pd60 32141 - 31938 - | hypothetical protein TERM 36 32096 - 32082 - G 71 -7.8 -3.41979 | opp_overlap 32080, overlap 32080 32078 GGAATAAATAATAGA GGCAGT ATG ACCGCC ACTGTCTGATCCAGC TERM 37 32170 - 32187 + r 77 -9.9 -2.73542 | opp_overlap 32155 TCCGAGTACCTAGGT CAAAGGG ATAT CCCTTTG TACTTAGGGGTTAGG RF_pd61 33313 - 32198 - | transposase RF_pd62 34489 - 33326 - | hypothetical protein RF_pd63 35116 - 34541 - | hypothetical protein RF_pd64 35202 - 35510 + | transposase TERM 38 35597 - 35579 - g 85 -3.2 -5.96219 | TAGTTATAAAAAAAA CTTTTC TTCATCC GAAAAG GGATATTGGTCAAGG RF_pd65 35544 - 35957 + | hypothetical protein TERM 39 36666 - 36631 - f 74 -9.2 -3.05715 | opp_overlap 36626 36622 36656 AATTGCGTGATTTAA GTTTAGTCTCATAAAG TATA CTTTATGAGACTAATA AAATACTTGTCTCAA TERM 40 36867 - 36850 - g 82 -8.5 -3.97307 | opp_overlap 36847 36850 TTGATGGAACAAGAA GTGCATT AAAA AATGCAC TGGATTATGTACGTG RF_pd66 36726 - 37274 + | site-specific recombinase TERM 41 37435 - 37421 - f 72 -8.6 -3.12327 | overlap 37419 GTGTGAGATGTAATA GCCTTA GCT TAAGGC ACATGATACCTAATG RF_pd67 37605 - 37784 + | transposase RF_pd68 39123 - 38167 - | hypothetical protein