TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.669039 %AT, 935241 nt, 4852 terms. Intergenic: 0.68639 %AT, H2T: 296977 nt, 1855 terms; T2T: 143414 nt, 2030 terms; H2H: 106462 nt, 1341 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|157954006|ref|NC_009897.1| Rickettsia massiliae MTU5 plasmid pRMA, complete sequence (length 15286) TERM 1 1371 - 1359 - g 80 -9.1 -3.53563 | opp_overlap 1359 AGAGTTTTTGGGAAA CGAGC TTT GCTCG TTTCCATCTGAATGT TERM 2 1359 - 1371 + G 81 -9.1 -3.72141 | opp_overlap 1359 AGAGTTTTTGGGAAA CGAGC TTT GCTCG TTTCCATCTGAATGT RMA_p01 106 - 2442 + | hypothetical protein RMA_p02 2693 - 2971 + | hypothetical protein RMA_p03 4574 - 2994 - | leucine-rich repeat-containing protein TERM 3 3064 - 3088 + g 80 -7.3 -4.53034 | ACTTCTATATCTGGT GTCTTATTTAT TCC ATAAATACGAC TTTTAATTGTATCAA spoT22 6200 - 4665 - | guanosine polyphosphate pyrophosphohydrolase/synthetase TERM 4 6337 - 6322 - H 70 -6.2 -4.34402 | overlap 6336 GGTTTGATATCAAAA GCTTAT GGCA ATAAGC AAAAATCGCAATTGG RMA_p05 7464 - 8015 + | site-specific recombinase TERM 5 8197 - 8164 - Tf 83 -9.7 -3.8397 | gap 1, opp_overlap 8174, overlap 8165 8169 ATAGATTTAGAAGAA TTTAAGTCAA-GGGGC GAA GCCCCTTTGACTCAAG AATTAGGCTTTGAGA TERM 6 8196 - 8165 - Tf 100 -13.2 -2.89659 | gap 1, opp_overlap 8174, overlap 8164 8169 TAGATTTAGAAGAAT TTAAGTCAA-GGGGC GAA GCCCCTTTGACTCAA GAATTAGGCTTTGAG TERM 7 8192 - 8169 - Tf 89 -11.8 -3.31443 | gap 1, opp_overlap 8174, overlap 8165 8164 TTTAGAAGAATTTAA GTCAA-GGGGC GAA GCCCCTTTGAC TCAAGAATTAGGCTT TERM 8 8174 - 8186 + TF 87 -10.5 -3.65199 | opp_overlap 8169 8165 8164 AAGAATTTAAGTCAA GGGGC GAA GCCCC TTTGACTCAAGAATT RMA_p06 9243 - 8200 - | transposase RMA_p07 9242 - 9514 + | hypothetical protein RMA_p08 10001 - 10312 + | TPR repeat-containing protein TERM 9 10823 - 10787 - T 100 -16.9 -3.38272 | opp_overlap 10799, overlap 10789 10799 GATTACCATGTAGAA TATAGATGAAAAGTAGC ATT GCTACTTTTCATCTAGA AGTGAGTAGGATATC TERM 10 10821 - 10789 - T 100 -19.5 -3.25896 | opp_overlap 10799, overlap 10787 10799 TTACCATGTAGAATA TAGATGAAAAGTAGC ATT GCTACTTTTCATCTA GAAGTGAGTAGGATA TERM 11 10811 - 10799 - T 82 -7.7 -4.4296 | opp_overlap 10799, overlap 10789 10787 GAATATAGATGAAAA GTAGC ATT GCTAC TTTTCATCTAGAAGT TERM 12 10799 - 10811 + T 80 -7.7 -4.3467 | opp_overlap 10799 10789 10787 GAATATAGATGAAAA GTAGC ATT GCTAC TTTTCATCTAGAAGT RMA_p10 12009 - 10933 - | hypothetical protein TERM 13 11239 - 11209 - GT 77 -9.1 -3.19091 | gap 1, opp_overlap 11199 11196 AGAGGGACTCATTAA CTC-CATTCTGTCG TGAT CGTCAGAATGTGAG CTAGAGGGACTCATT TERM 14 11287 - 11257 - GT 77 -9.1 -3.19091 | gap 1, opp_overlap 11247 11244 AGAGGGACTCATTAA CTC-CATTCTGTCG TGAT CGTCAGAATGTGAG CTAGAGGGACTCATT TERM 15 11335 - 11305 - GT 77 -9.1 -3.19091 | gap 1, opp_overlap 11297 11296 AGAGGGACTCATTAA CTC-CATTCTGTCG TGAT CGTCAGAATGTGAG CTAGAGGGATTTGAA TERM 16 11521 - 11531 + gT 70 -4.6 -4.6759 | AGCAGTTTCCGTTTG CGCC ACA GGTG TTTTCTTACAGTATT RMA_p11 12316 - 11942 - | hypothetical protein TERM 17 12671 - 12686 + H 100 -7.6 -5.37043 | GATTAAATCTTTGTG CTCCTT CAAT AAGGAG TTTTTTATATCCCGT TERM 18 13056 - 13070 + H 74 -7.2 -4.00122 | ACTAATTATTGCCAT CACATA CAT TATGTG TTATATTTATTGTGA TERM 19 13117 - 13158 + H 100 -7.4 -5.69262 | opp_overlap 13117 GGGTGACTTTAATCA CCAGTAAACACTCTCCTT GTCCAA AATTTGAGTGTTTACTGG TTTTTCTTTTTATAA TERM 20 13241 - 13285 + H 85 -8.1 -4.40311 | opp_overlap 13252, overlap 13252 AAATATATTTTGGTG TGTCAAGAAAATAGTTTCTGG TAT TCAGAAACTATTTGTATGATA TTTTGAGTTATTTAT TERM 21 13274 - 13252 - H 90 -9.3 -4.63218 | opp_overlap 13241 13252 GGTGTGTCAAGAAAA TAGTTTCTG GTATT CAGAAACTA TTTGTATGATATTTT TERM 22 13252 - 13274 + H 93 -10 -4.16101 | opp_overlap 13252, overlap 13241 GGTGTGTCAAGAAAA TAGTTTCTGG TAT TCAGAAACTA TTTGTATGATATTTT RMA_p12 13299 - 13784 + | hypothetical protein parA2 14838 - 14197 - | plasmid stability protein ParA SEQUENCE gi|157964072|ref|NC_009900.1| Rickettsia massiliae MTU5, complete genome (length 1360898) RMA_0001 1 - 822 + | hypothetical protein TERM 1 984 - 959 - f 71 -5.3 -4.67353 | GCATGGATTGAAAAA CCTACTCGATG TCAT CCCCGCGTAGG CGGGGATCCAGAAAA TERM 2 1070 - 1046 - f 70 -4.4 -4.88795 | opp_overlap 1046 ATTTAATAAAATAAA CCTAAAAAAA CAAGT TTTTTATAGG TTTTACTGGATTCCC trxA 1134 - 1463 + | thioredoxin rfbE 1441 - 2223 + | O-antigen export system ATP-binding protein RfbE TERM 3 2253 - 2232 - g 78 -7.5 -4.17701 | TTCATAAATGATAAA GTATTTTTT TTCT AAAAAATAC TGGCAGGCAATAGCA TERM 4 2587 - 2600 + G 70 -2.4 -5.33124 | ATTTGCTCATTTTCG GCAA TGTATT TTGC TTTTATTTTATTATT rfbA 2224 - 3000 + | O-antigen export system permease protein RfbA TERM 5 3799 - 3764 - g 75 -9.9 -2.55544 | opp_overlap 3763, overlap 3760 TGAGGAGCGAAGCGA CGTGGCAATCTCA GGAGATTTGA TGAAATTGCCACG CTCCTTGCAGTCGCT TERM 6 5802 - 5792 - g 73 -4 -5.12707 | GCAAAGTCTAAAAAA TGAA ATA TTCA GTGAAAATACAAAAA gltD 2997 - 6035 + | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase lpxA 7314 - 6502 - | UDP-N-acetylglucosamine acyltransferase fabZ 7758 - 7321 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 7 7632 - 7645 + g 74 -5.3 -4.76644 | CTGTAAATTGCGGTT CGTTA ACAG TAACG TTTTTAATACCTGTT TERM 8 7728 - 7708 - G 73 -4 -5.14163 | ATCTACTAATAAAAA TGGATAGC GATGA GGTATCCA ATCCATGATTTCGGT lpxD 8979 - 7942 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 9 10614 - 10569 - R 100 -18.5 -4.08767 | opp_overlap 10569 TGCATGGCTCGAAAA CCCGCTCGATGTCATTTCCGC GAAA GCGGAAATGACATAAAACGAG TCATGTGAGCAATAC TERM 10 10569 - 10614 + r 87 -11.9 -2.62616 | opp_overlap 10569 TGCATGGCTCGAAAA CCCGCTCGATGTCATTTCCGC GAAA GCGGAAATGACATAAAACGAG TCATGTGAGCAATAC TERM 11 11184 - 11197 + r 74 -3.9 -5.24796 | opp_overlap 11184, overlap 11178 TACGAGCTTTAAAAA GTAAT GAAA ATTAC TTTTTGTTATATAAA TERM 12 11892 - 11911 + r 79 -8.6 -3.89607 | overlap 11893 TTTATCTTCATCTTT TGCGTGTA TTAT TACACGCG TTAATTTTTCTAGTA TERM 13 11893 - 11910 + r 79 -9.9 -2.9268 | overlap 11892 TTATCTTCATCTTTT GCGTGTA TTAT TACACGC GTTAATTTTTCTAGT TERM 14 13510 - 13495 - R 82 -4.8 -5.41746 | opp_overlap 13495 AATTGCTGAAAAAAA TAAGAA TTCG TTCTTA TTTAAATAATGAAAA TERM 15 13760 - 13785 + r 76 -3.3 -5.41746 | overlap 13761 ACAATTGACATGTGT CCTTCTTCCAA AAGC TTTGAAGAAGA TTTTTTTAAAAAGTT TERM 16 13914 - 13888 - R 81 -3.1 -5.76633 | GCATACAGAAAAAAA TTCTTATGGTT ATTAA AACAACAAGAA AACGGTTATTTACAA RMA_0017 14973 - 14440 - | putative P-loop hydrolase znuA 15938 - 14961 - | Zinc/manganese ABC transporter substrate binding protein pcnB 17170 - 15914 - | Poly(A) polymerase TERM 17 16583 - 16571 - G 74 -3.3 -5.28315 | AGAAAACCGAAAAAA GCGTA GAA TTCGC AAATAATCTTCTTTA TERM 18 19875 - 19855 - g 80 -2.5 -5.67967 | overlap 19859 ATTAGTACAAAAAAA TCAACAACA TAT TGCTGCAGA AAAAACAAAAAAACA TERM 19 21432 - 21422 - g 74 -5.4 -4.67943 | CCGGAAGATATAAAA GCAT ATA ATGC AAAAGCAGAAAAAAA TERM 20 22483 - 22473 - g 82 -5.4 -5.2422 | AATTAGATGAAAAAA TGCT TTT AGCA ATGAATGCACGATTA TERM 21 23434 - 23469 + G 71 -7.8 -3.63744 | opp_overlap 23434, overlap 23432 23437 AAAACATCGTAATCA TAGTTATAATGCGGAA GCAT TACTGCATTATAATTA TCTTTTGCAGAGCAA TERM 22 23437 - 23466 + G 73 -7.3 -3.95435 | opp_overlap 23434, overlap 23434 23432 ACATCGTAATCATAG TTATAATGCGGAA GCAT TACTGCATTATAA TTATCTTTTGCAGAG sca1 18551 - 23920 + | cell surface antigen Sca1 atpF 28349 - 27840 - | F0F1 ATP synthase subunit B atpX 28819 - 28346 - | F0F1 ATP synthase subunit B' atpE 29074 - 28838 - | F0F1 ATP synthase subunit C atpB 29879 - 29133 - | F0F1 ATP synthase subunit A RMA_0029 30234 - 29866 - | hypothetical protein TERM 23 30169 - 30155 - G 87 -11.4 -3.31144 | CCGTCATTGCGAGAA GACGCC ATA GGCGTC GACGAAGCAATCTCA dsbG 31088 - 30240 - | protein-disulfide isomerase TERM 24 31206 - 31192 - g 74 -5.8 -4.5954 | opp_overlap 31191 CTATACTATAGAAAA TAATGT CTA ACATTA AGTTCTTAGGCATTA RMA_0031 31191 - 31778 + | transcriptional regulator RMA_0032 33644 - 32025 - | putative methyltransferase TERM 25 32474 - 32486 + g 74 -6.3 -4.29049 | opp_overlap 32474, overlap 32471 ATTGATATTTACCAA GCTTT TTA AAAGC TTCTTTTGCTACTTG TERM 26 32878 - 32898 + g 77 -3.3 -5.51165 | opp_overlap 32870 GCAGTAAGCGATGTA TCACCTAAG TAA TTTAGATGA TTTTTTTGAGCTTTT TERM 27 34003 - 34013 + r 81 -4 -5.66684 | TTTCAAAAATTTGCT GTAT TTA ATAC TTTTTTTCTGGATTC recF 35143 - 34061 - | recombination protein F TERM 28 34634 - 34644 + g 73 -4 -5.06016 | ATCATCTCTTATATC TTCT ACT AGAA TTTTATTTCTCTCAT TERM 29 35774 - 35830 + r 100 -30.3 -3.3972 | opp_overlap 35789 35793, overlap 35764 35789 35793 TCTTACCTCCTTTTA GAGGTTATCAGTAAATAAATTTTAATT ACT AATTAAAATTTATTTACTGATAACCTC TTAGTAATTTTATAA TERM 30 35789 - 35815 + r 83 -9.8 -3.79251 | opp_overlap 35789 35793, overlap 35774 35793 GAGGTTATCAGTAAA TAAATTTTAATT ACT AATTAAAATTTA TTTACTGATAACCTC TERM 31 35815 - 35789 - R 83 -9.8 -3.79251 | opp_overlap 35789 35774 35793, overlap 35793 GAGGTTATCAGTAAA TAAATTTTAATT ACT AATTAAAATTTA TTTACTGATAACCTC TERM 32 35793 - 35811 + r 74 -6.2 -4.51743 | opp_overlap 35789 35793, overlap 35789 35774 TTATCAGTAAATAAA TTTTAATT ACT AATTAAAA TTTATTTACTGATAA TERM 33 35811 - 35793 - R 74 -6.2 -4.51743 | opp_overlap 35793 35789 35774, overlap 35789 TTATCAGTAAATAAA TTTTAATT ACT AATTAAAA TTTATTTACTGATAA TERM 34 36457 - 36514 + r 88 -9.1 -4.25283 | opp_overlap 36457 TCTCACATCCTAGAA TTTATATATATTACAACATATTT TTTTAAATTCTT TAATATGTTGTAATATATATAAA TTTTGATAAACGGAT TERM 35 36514 - 36457 - R 77 -9.1 -3.34962 | opp_overlap 36457 TCTCACATCCTAGAA TTTATATATATTACAACATATTT TTTTAAATTCTT TAATATGTTGTAATATATATAAA TTTTGATAAACGGAT TERM 36 37613 - 37631 + r 74 -7.6 -3.76952 | overlap 37627 TAGTAACGGTTACGT TTAGAAAA ATC TTTTCTAA TTTAGATTCGATAAA RMA_0043 38660 - 37989 - | hypothetical protein RMA_0048 41691 - 42284 + | Sco2 protein precursor RMA_0049 42864 - 42295 - | hypothetical protein cvpA 42929 - 43600 + | putative colicin V production membrane protein TERM 37 43962 - 43939 - T 73 -7.6 -3.60094 | overlap 43940 43960 GAGATATAATCACAA CCATTATCTT CCGC AAGATAATGA CAATATTATTATCAT TERM 38 43961 - 43940 - T 72 -8.9 -2.75333 | overlap 43939 43960 AGATATAATCACAAC CATTATCTT CCGC AAGATAATG ACAATATTATTATCA TERM 39 43997 - 43984 - T 71 -5.3 -4.58424 | opp_overlap 43984, overlap 43968 43992 TATTATCATAGAAAA TAACC ATAG GGTTA ATTTTACCCAAAAGA RMA_0056 48290 - 46959 - | hypothetical protein TERM 40 47657 - 47642 - G 71 -9 -3.07487 | overlap 47641 TTATATCGGCAAAAT GCCCAA GCTC TTGGGC TGCGATAATCTGAAG RMA_0057 49059 - 48388 - | hypothetical protein TERM 41 48512 - 48522 + g 77 -5.4 -4.9792 | GATTTTAACTTTATT GCAT CTA ATGC TTTTTGTCTACCATC TERM 42 48788 - 48808 + g 71 -7.7 -3.55444 | CCGGTTGAAGAAATC GCTATTTTT TTC AAAAATGGC TTTGAGCAATCAACC TERM 43 50704 - 50715 + H 70 -4.4 -4.82128 | AATCTTGATGACTCA TGCT ATAT AGCA TTTTATCTTTGGTAA TERM 44 50905 - 50915 + H 77 -4 -5.32944 | AATTAGCAACTACCG TAAG ACC CTTA TTTTTTAATTCTAAA TERM 45 53433 - 53422 - g 93 -4.4 -5.95946 | opp_overlap 53422, overlap 53427 TTAATAATAAAAAAA TAGC AGCA GCTA TTTTACAGCTTCGTA TERM 46 53476 - 53460 - g 70 -2.2 -5.22039 | overlap 53465 CGTAAAGGCAAAAAA GCAGAT ACCGA ATCGGC AGAAAATAGTTACGA TERM 47 54376 - 54366 - g 73 -4 -5.02439 | ACAGAATTAGAAAAA TTAG AGT CTAA ATCCTATGATATGGG clpB 53007 - 55589 + | ClpB TERM 48 55755 - 55710 - T 100 -16.3 -5.02074 | overlap 55712 GCATGGCTCAAAAAA CGCGTTTGATATCATTCCCGC TTTC GCGGGAATGACACAAAACGAG CAATGCAATAAGACC TERM 49 55753 - 55712 - T 100 -17.5 -2.75975 | overlap 55710 ATGGCTCAAAAAACG CGTTTGATATCATTCCCGC TTTC GCGGGAATGACACAAAACG AGCAATGCAATAAGA RMA_0064 56368 - 55829 - | hypothetical protein TERM 50 56372 - 56344 - G 100 -16.3 -2.87132 | opp_overlap 56344 56349, overlap 56349 CTCTTTTTTTATATA TGTAATTACCATG AAA CATGGTAATTACA TATCATACTACTAAA TERM 51 56344 - 56372 + g 100 -16.3 -2.83715 | opp_overlap 56344 56349, overlap 56349 CTCTTTTTTTATATA TGTAATTACCATG AAA CATGGTAATTACA TATCATACTACTAAA TERM 52 56367 - 56349 - G 83 -10.4 -3.15999 | opp_overlap 56344 56349, overlap 56344 TTTTTATATATGTAA TTACCATG AAA CATGGTAA TTACATATCATACTA TERM 53 56349 - 56367 + g 83 -10.4 -3.14944 | opp_overlap 56349 56344, overlap 56344 TTTTTATATATGTAA TTACCATG AAA CATGGTAA TTACATATCATACTA gcp 57482 - 56448 - | O-sialoglycoprotein endopeptidase TERM 54 57666 - 57694 + r 72 -9.1 -2.60219 | opp_overlap 57674, overlap 57669 57674 TTATTTAATAATGCC TAATTAGATACCT TTA AGGTATTTAATTG ATTATACAGCTTATA TERM 55 57669 - 57691 + r 76 -8.6 -3.4489 | opp_overlap 57674, overlap 57666 57674 TTTAATAATGCCTAA TTAGATACCT TTA AGGTATTTAA TTGATTATACAGCTT aco1 58858 - 57665 - | Acyl-CoA desaturase 1 TERM 56 59730 - 59741 + G 70 -4.4 -4.69559 | TTAATAGTTTTAGTT GCTA TAAA TAGC TTTATTTTAAAGTTT TERM 57 59741 - 59753 + G 72 -4.9 -4.67607 | opp_overlap 59741 AGTTGCTATAAATAG CTTTA TTT TAAAG TTTGTTTGTTGGAGA TERM 58 59875 - 59845 - g 70 -4.2 -4.65446 | opp_overlap 59823 59855, overlap 59866 59874 ACGATATAGATAAAA TCGTTAATGATTTT GCT AAAATTATTAAAGA TAATAATGGCACTAT rpsF 59709 - 60146 + | 30S ribosomal protein S6 TERM 59 60250 - 60226 - g 80 -7.3 -4.57755 | AGGTAGGAGATAAAA CTGCTAAAAAA GTA TTTTTTAGAAG ACGTAAAGGATGCCC rpsR 60171 - 60458 + | 30S ribosomal protein S18 rplI 60470 - 60985 + | 50S ribosomal protein L9 TERM 60 60962 - 60991 + F 79 -8.1 -4.04149 | gap 1, opp_overlap 60967, overlap 60967 AAGACTGAAACTTCG GAAGATTTA-GCTG AGT CAGCATAAATTTTC TTTATCATCTAATTG TERM 61 60967 - 60986 + F 73 -4.4 -5.03227 | gap 1, opp_overlap 60967, overlap 60962 TGAAACTTCGGAAGA TTTA-GCTG AGT CAGCATAAA TTTTCTTTATCATCT tilS 61279 - 62712 + | tRNA(Ile)-lysidine synthetase TERM 62 62767 - 62741 - f 73 -7.6 -3.57462 | opp_overlap 62741 62732, overlap 62745 GAGGTTATCTGTAAA TAAATTTTAACT ACT AATTAAAATTTA TTTATAGACCTCTTA ftsH 62810 - 64729 + | ATP-dependent metalloprotease FtsH TERM 63 65900 - 65924 + F 70 -4.4 -4.90302 | opp_overlap 65900 GGGAATCCAGTAAAA CCTACAAAAA ACTTG TTTTTTTAGG TTTATTTTGTTAATA sdhB 66128 - 66913 + | succinate dehydrogenase iron-sulfur subunit RMA_0077 68515 - 67259 - | hypothetical protein TERM 64 67430 - 67444 + gT 73 -7 -3.9163 | overlap 67427 ACGTACTAAAGTGCA CGCTGC GGT GCTGCG TTTCGTGTCTCCTTT lgt 69252 - 68458 - | prolipoprotein diacylglyceryl transferase TERM 65 68568 - 68551 - GH 70 -4.1 -4.68908 | opp_overlap 68551 GCTATCTAAAATAAA CCCGA TTTGTATG TCGGG TTCTCTAAATATTTC RMA_0079 69482 - 70645 + | hypothetical protein TERM 66 70693 - 70726 + F 100 -16.3 -3.19038 | opp_overlap 70700, overlap 70686 70700 AATAAATTGCATTTG TATCCAAGATGGAAG TCGT CTTTCATCTTGGATA TTCACTACTTTTGAA TERM 67 71772 - 71755 - g 70 -7.1 -3.72152 | overlap 71725 71724 71723 CAATTAAAAGCAGAA TTTTTGC CGGA GCAAAAA AAGTAGACTTGCTTG yidC 70830 - 72512 + | putative inner membrane protein translocase component YidC pgsA 72512 - 73057 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RMA_0082 73071 - 73631 + | hypothetical protein TERM 68 73831 - 73782 - T 80 -9 -3.66429 | opp_overlap 73785 73788 AATAACGGCTAAGAA TGATAATAAGAGCAAAAGTA ATTTATTTTG TATCTTTGCTCTTATTATCA TTAGAATCAGCGGTA RMA_0083 74223 - 73804 - | hypothetical protein RMA_0084 74418 - 74849 + | tellurite resistance protein-related protein TERM 69 76025 - 76042 + T 81 -9.9 -3.07816 | opp_overlap 76020 CATGGAACAATGTCA TTCCTGC GAAG GCAGGAA TTCAGTAACTAAAAG def3 76879 - 76181 - | polypeptide deformylase TERM 70 76592 - 76613 + g 73 -4.4 -4.92757 | overlap 76594 TGATATGCCTATTTG TGGTGCAG CAAGTC CTGCACAA TTTTCTTCTTGATCA TERM 71 77148 - 77132 - g 74 -5.9 -4.47397 | AGAAAGATATGAAAA TAAGAAG TTT CTTCCTA TGGCGTTTATGATGT tlc1 77058 - 78560 + | ATP/ADP translocase TERM 72 79329 - 79349 + G 71 -5.5 -4.64048 | overlap 79331 79342 AATAAGCTAATATGG TATGTTTGT TTA GCAAACATG TTTGTTTATATAATA uhpC 78564 - 79883 + | sugar phosphate permease ndk 79902 - 80336 + | nucleoside diphosphate kinase TERM 73 80382 - 80410 + G 74 -9.5 -3.10464 | opp_overlap 80391, overlap 80391 GGCGGTGGACATGCA GGCGTAGAAGCGG CCG CCGCTTCTGCACG TCTTGGAGTTCCTAC TERM 74 80391 - 80401 + G 70 -8.2 -3.33315 | opp_overlap 80391, overlap 80382 CATGCAGGCGTAGAA GCGG CCG CCGC TTCTGCACGTCTTGG TERM 75 80401 - 80391 - g 70 -8.2 -3.31461 | opp_overlap 80391 80382 CATGCAGGCGTAGAA GCGG CCG CCGC TTCTGCACGTCTTGG gidA 80340 - 82208 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA gidB 82186 - 82767 + | glucose-inhibited division protein B soj 82764 - 83531 + | ATPase involved in chromosome partitioning RMA_0094 83518 - 84381 + | ParB-like partition protein abcT1 84643 - 86310 + | putative ABC transporter ATP-binding protein TERM 76 86522 - 86500 - g 83 -2 -5.81412 | opp_overlap 86504, overlap 86501 86504 TTTATTTAAAAAAAA TTATTAACCT AGA AGGTTATTAT CATGGTAGTTATGAT RMA_0096 86301 - 86630 + | hypothetical protein TERM 77 86799 - 86783 - g 70 -3.7 -4.85599 | TTTATGGCAGAAAAA CTTGTTA AAT TAACTAG CAAGCTTGAGATTCC kdsA 86663 - 87490 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 78 87581 - 87563 - T 74 -7.6 -3.90608 | AAATAGAAGTAATAA TTTTTTAC AAT GTAAAAAA TAGAACTTTCTTATC TERM 79 88815 - 88797 - T 74 -3.2 -5.40625 | AGATGATATAAAAAA TATATTAG AAG CAAATATA GACAAAAATAAATTC TERM 80 89449 - 89487 + T 100 -14.1 -3.41051 | gap 1, opp_overlap 89441 89482, overlap 89443 TTAAAAGTTTGACGT TGC-GATGTCATTGCTGC TGTT GCAGGAATGACATCGGCA TTCTAATAACAATGC iscA1 89854 - 89522 - | Iron-sulfur cluster assembly accessory protein TERM 81 90026 - 90014 - H 70 -4.1 -4.9448 | AGTTATTAAATAAAA TTCCG GTT CAGAA TGATTGCTTCGTCAA TERM 82 91064 - 91046 - g 70 -3.8 -4.90918 | overlap 91037 91050 ATAAAAGTAATAAAA TTACGGCC ATC AGCCTTAA ATGTACTAAAATCGT dgt 90109 - 91269 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein argS 91413 - 93149 + | arginyl-tRNA synthetase TERM 83 93206 - 93233 + F 73 -9.2 -2.80113 | gap 1, overlap 93230 GATACCGAGTTGTCA TTGCGA-GCAGCC TTA GGCTGCGTGGCAA TCTCATGAAATAATA RMA_0104 93304 - 93996 + | hypothetical protein parC 94187 - 96400 + | DNA topoisomerase IV subunit A TERM 84 96451 - 96487 + T 81 -8.9 -3.83318 | opp_overlap 96459, overlap 96452 ATATTTTATATAGTT TGATACAAGCGAATT ATTTATA AATTCGCTTGTACCG TTCTATTATTAAAAG TERM 85 96452 - 96486 + T 79 -10.2 -2.89509 | opp_overlap 96459, overlap 96451 TATTTTATATAGTTT GATACAAGCGAATT ATTTATA AATTCGCTTGTACC GTTCTATTATTAAAA TERM 86 97076 - 97086 + T 75 -2.6 -5.53288 | opp_overlap 97076 ATTTAAAGCATGTAA TATT GTA AATA TTTTTTTAAGTTGGA TERM 87 97269 - 97255 - T 76 -3.6 -5.4593 | overlap 97258 97260 97262 97267 TTAAAATAATAAAAA TCATAT ATC ACATGA TTACCATATATTATG TERM 88 97315 - 97260 - T 78 -9.4 -3.26262 | gap 1, opp_overlap 97273 97286, overlap 97255 97258 97262 97267 ATAATAAAAATCATA TATCACATGATTACCATATATTATGGT TGT ATCACAATATATGGTAATCA-GAGAAA ATCAATATCTAAAAA TERM 89 97313 - 97262 - T 89 -12 -3.1709 | gap 1, opp_overlap 97273 97286, overlap 97255 97260 97258 97267 AATAAAAATCATATA TCACATGATTACCATATATTATGGT TGT ATCACAATATATGGTAATCA-GAGA AAATCAATATCTAAA TERM 90 97309 - 97267 - T 100 -16 -2.91086 | opp_overlap 97273 97286, overlap 97255 97262 97260 97258 AAATCATATATCACA TGATTACCATATATTATGGT TGT ATCACAATATATGGTAATCA GAGAAAATCAATATC RMA_0106 98939 - 97617 - | hypothetical protein TERM 91 97778 - 97788 + g 71 -3.2 -5.10064 | TAGCGAGGCTTACAG CATC AAC GGTG TTTTTATATCTTGAA TERM 92 97963 - 97951 - G 72 -2.7 -5.22006 | GCACCACAAGAAAAA TTACC GTA AGTAA ATACAGCTCCAAGAT TERM 93 98319 - 98330 + g 83 -5.8 -5.08255 | AGTATAAGAAACTCC GGCT TGGA AGCC TTTTATTTTAGGCGT dcd 99203 - 99775 + | deoxycytidine triphosphate deaminase secB 99809 - 100279 + | preprotein translocase subunit SecB czcR 100486 - 101217 + | transcriptional activator protein CzcR RMA_0110 101221 - 102042 + | 7-cyano-7-deazaguanine reductase TERM 94 102146 - 102176 + T 100 -6.4 -5.93809 | opp_overlap 102153, overlap 102147 102148 102153 GACCACGGAATCTAG CTTAAAATACTAAT AAT ATTAGTATTTTAGA TTTTTTTTATGGACC TERM 95 102147 - 102175 + T 90 -9.9 -4.15201 | opp_overlap 102153, overlap 102146 102148 102153 ACCACGGAATCTAGC TTAAAATACTAAT AAT ATTAGTATTTTAG ATTTTTTTTATGGAC TERM 96 102148 - 102174 + T 84 -11.2 -3.08036 | opp_overlap 102153, overlap 102147 102146 102153 CCACGGAATCTAGCT TAAAATACTAAT AAT ATTAGTATTTTA GATTTTTTTTATGGA TERM 97 102153 - 102169 + T 79 -6.7 -4.59309 | opp_overlap 102153, overlap 102148 102147 102146 GAATCTAGCTTAAAA TACTAAT AAT ATTAGTA TTTTAGATTTTTTTT TERM 98 102169 - 102153 - T 74 -6.7 -4.15453 | opp_overlap 102153 102148 102147 102146 GAATCTAGCTTAAAA TACTAAT AAT ATTAGTA TTTTAGATTTTTTTT RMA_0111 102933 - 102367 - | hypothetical protein pntB 104409 - 102982 - | NAD(p) transhydrogenase subunit beta TERM 99 104489 - 104458 - R 100 -5.9 -6.32976 | gap 1, overlap 104459 AAAAAAATAAAAAAA CTG-GATCCCGCGA TCAAG TCGCGGGATGACAA ATACGCTTCAAGAAC TERM 100 104488 - 104459 - R 76 -7.2 -4.3155 | gap 1, overlap 104458 AAAAAATAAAAAAAC TG-GATCCCGCGA TCAAG TCGCGGGATGACA AATACGCTTCAAGAA ompW 105251 - 104517 - | OmpW family outer-membrane protein TERM 101 105691 - 105713 + G 71 -3.4 -5.16206 | overlap 105692 CTTACCATAGCTCCC GTTACTACTG CAA CAGTCGTAAG TTTTTCTATTCCTTT sam 105400 - 106290 + | S-adenosylmethionine transporter proP1 106268 - 107533 + | proline/betaine transporter TERM 102 107926 - 107909 - g 80 -2.7 -5.74086 | opp_overlap 107909 AAACCAAAGAAAAAA CACTAAA GATT TTAAGTG ATTATTTACAGAAAG RMA_0116 107530 - 108024 + | hypothetical protein secG 108366 - 108668 + | preprotein translocase subunit SecG TERM 103 108790 - 108747 - T 100 -11.9 -4.07568 | gap 1, opp_overlap 108733, overlap 108751 CGTGGGTCGGTAAAA TCCACTGTGTCACCCCGTGG TCAAG CCACGGGGTGACAGA-TAAA AGTACTGGATTCCTG TERM 104 108787 - 108751 - T 100 -15.2 -2.74605 | overlap 108747 GGTCGGTAAAATCCA CTGTGTCACCCCGTGG TCAAG CCACGGGGTGACAGAT AAAAGTACTGGATTC TERM 105 109580 - 109606 + T 84 -11 -3.02807 | opp_overlap 109563 109580, overlap 109563 109577 109572 109571 TTATGCATTAAGAAA GGATAAGCTCTT AGG AAAAGCTTATCC TGATTTAAATTTTCT TERM 106 109606 - 109580 - T 100 -13.2 -4.258 | opp_overlap 109563 109580 109577 109572 109571, overlap 109563 TTATGCATTAAGAAA GGATAAGCTCTT AGG AAAAGCTTATCC TGATTTAAATTTTCT sca2 115048 - 109631 - | cell surface antigen Sca2 TERM 107 112648 - 112675 + g 79 -9.3 -3.37796 | opp_overlap 112641 112669 GTATAACATTTGTAA GATCAGCTTGT CTTTTT ATAAGCTGATC TTGTAAATCATCAGC TERM 108 114856 - 114881 + g 73 -4.1 -4.99312 | overlap 114876 ATTTTTTGATTTTTT CATTTGGAG TCAAATTT TTCCAAATG TTTTGTTGTTGTGTT TERM 109 115207 - 115258 + H 73 -8.4 -3.47218 | opp_overlap 115212 115213 115224, overlap 115212 115224 TGTATACTCCGAATT TTAAACTTTTTTCAAAAGTAGTAT TAAC ATACTACTTTTGAAAGAAATGTAC TTCAGTTTTTGGTAA TERM 110 115212 - 115253 + H 100 -12.7 -2.97122 | opp_overlap 115212 115213 115224, overlap 115207 115224 ACTCCGAATTTTAAA CTTTTTTCAAAAGTAGTAT TAAC ATACTACTTTTGAAAGAAA TGTACTTCAGTTTTT TERM 111 115253 - 115212 - H 100 -12.7 -3.66356 | opp_overlap 115212 115207 115224, overlap 115213 115224 ACTCCGAATTTTAAA CTTTTTTCAAAAGTAGTAT TAAC ATACTACTTTTGAAAGAAA TGTACTTCAGTTTTT TERM 112 115252 - 115213 - H 100 -14 -2.79492 | opp_overlap 115212 115207 115224, overlap 115212 115224 CTCCGAATTTTAAAC TTTTTTCAAAAGTAGTAT TAAC ATACTACTTTTGAAAGAA ATGTACTTCAGTTTT TERM 113 115224 - 115241 + H 74 -7.1 -4.08394 | opp_overlap 115213 115212 115224, overlap 115212 115207 AAACTTTTTTCAAAA GTAGTAT TAAC ATACTAC TTTTGAAAGAAATGT TERM 114 115241 - 115224 - H 74 -7.1 -4.0896 | opp_overlap 115224 115212 115207, overlap 115213 115212 AAACTTTTTTCAAAA GTAGTAT TAAC ATACTAC TTTTGAAAGAAATGT cysS 115281 - 116660 + | cysteinyl-tRNA synthetase TERM 115 116673 - 116687 + F 72 -8.6 -3.06265 | opp_overlap 116673 116672 116675, overlap 116675 TAAAAGCTTGTAAAT TACGCA ATA TGCGTA TATAATTTATAGGCT rpsB 116853 - 117791 + | 30S ribosomal protein S2 TERM 116 117848 - 117881 + F 87 -7.7 -4.82901 | opp_overlap 117858, overlap 117852 CTTGATCGCGGGATC CAGCTTAAAATACTA ATAT TAGTATTTTAAATTG TTTTTATGGACCCCA TERM 117 117852 - 117877 + F 77 -9.3 -3.31001 | opp_overlap 117858, overlap 117848 ATCGCGGGATCCAGC TTAAAATACTA ATAT TAGTATTTTAA ATTGTTTTTATGGAC TERM 118 118216 - 118226 + G 80 -6.8 -4.71426 | opp_overlap 118216 118215 GTAATTGAAGTAAAT TCCG AAA CGGA TTTTGTTGCTAGAAA tsf 117979 - 118908 + | elongation factor Ts TERM 119 119067 - 119036 - T 74 -5.4 -4.7497 | opp_overlap 119061, overlap 119038 119044 GGGATCCAGTAAAAA TATAAAAACAACTA ATAC TAGTTATTTTTATG AATACCGTGGTCAAA TERM 120 119065 - 119038 - T 79 -8 -3.99327 | opp_overlap 119061, overlap 119036 119044 GATCCAGTAAAAATA TAAAAACAACTA ATAC TAGTTATTTTTA TGAATACCGTGGTCA TERM 121 119059 - 119044 - T 72 -2.6 -5.36364 | overlap 119038 119036 GTAAAAATATAAAAA CAACTA ATAC TAGTTA TTTTTATGAATACCG TERM 122 119090 - 119070 - T 100 -14.1 -3.15663 | opp_overlap 119061, overlap 119086 AGTTATTTTTATGAA TACCGTGGT CAA ACCACGGTA TGACACCGAATGCGT TERM 123 119206 - 119237 + T 75 -8.2 -3.61175 | opp_overlap 119206 119205 119200, overlap 119204 CAAAGCAAACAAAGG CGAATTTAGGATAA GTGC TTATTCTAAACTCG TATTTATAATATCTC TERM 124 120151 - 120161 + T 85 -6.8 -5.03314 | opp_overlap 120143 120151 GCAAACATGCTTAAA GCAG ATC CTGC TTTTTTAAAGATACA kdtA 121851 - 120427 - | 3-deoxy-D-manno-octulosonic-acid transferase TERM 125 121173 - 121187 + gT 74 -5.8 -4.57341 | TTTTGAGAATAAGCT GAAAAA AGC TTTTTC TTTTTAGCCAAGCTT RMA_0126 122477 - 121797 - | hypothetical protein aatA 123845 - 122625 - | aspartate aminotransferase TERM 126 123424 - 123413 - G 81 -5.8 -4.91712 | CGCAATTTACAAAAA CAGG TGTT CCTG TGCTAAGTGCAACCA RMA_0128 124153 - 123890 - | hypothetical protein RMA_0129 124397 - 124146 - | antitoxin of toxin-antitoxin RMA_0130 124539 - 125543 + | hypothetical protein vacJ 125506 - 126303 + | VacJ lipoprotein precursor TERM 127 126888 - 126877 - gf 71 -3 -5.07567 | CGATACTTTAAAAAA TCAA GGCT TTGA AGCACTAATACAAAA RMA_0132 126200 - 126922 + | ABC-type transporter TERM 128 127640 - 127626 - gf 83 -5.8 -5.05782 | overlap 127637 ATCGAGTTCAAAAAA TTAGTA ATT TACTAA ATATAGATTCAGCTT prs 127100 - 128128 + | ribose-phosphate pyrophosphokinase alr 128059 - 129192 + | alanine racemase TERM 129 129263 - 129242 - f 79 -3.7 -5.62552 | overlap 129244 129249 AAAAAAATTAAAAAA GACTGAATC CCGC GATCAAGTC GCGGGATGACATTAG TERM 130 129269 - 129249 - f 90 -12.6 -3.36112 | overlap 129242 129244 TTAAAAAAGACTGAA TCCCGCGA TCAAG TCGCGGGA TGACATTAGAGGTTA RMA_0135 129330 - 130124 + | ABC transporter permease protein TERM 131 130641 - 130631 - g 93 -4.6 -6.08342 | opp_overlap 130634, overlap 130634 TAAGAAAGAAAAAAA CGAC CTT GCCG GTGCAAAGCTTAATT TERM 132 130746 - 130723 - g 73 -3.8 -5.17576 | opp_overlap 130726, overlap 130725 130726 GAGGAATGCAAAAAA GAGTAGCCCT TGCT AGGGCTATTT GTAGTACACCGTCGA TERM 133 130744 - 130725 - g 71 -6.4 -4.20888 | opp_overlap 130726, overlap 130723 130726 GGAATGCAAAAAAGA GTAGCCCT TGCT AGGGCTAT TTGTAGTACACCGTC TERM 134 130726 - 130743 + G 87 -9.9 -3.96327 | opp_overlap 130725 130723 130726 GAATGCAAAAAAGAG TAGCCCT TGCT AGGGCTA TTTGTAGTACACCGT TERM 135 130743 - 130726 - g 77 -9.9 -3.11448 | opp_overlap 130726, overlap 130725 130723 GAATGCAAAAAAGAG TAGCCCT TGCT AGGGCTA TTTGTAGTACACCGT mkl 130194 - 131033 + | ribonucleotide ABC transporter ATP-binding protein TERM 136 131138 - 131158 + G 80 -6.3 -4.80167 | opp_overlap 131138 131142 ATATAATAAAAATAG TAATTATTC TTG GAATAGTTA TTTTAATTTTTAGTC RMA_0137 131035 - 131283 + | hypothetical protein TERM 137 131627 - 131638 + T 73 -4.4 -5.08483 | GTGAATTAATATTTC TAGC TAAT GCTA TTTTATTTAATTTTA TERM 138 132144 - 132158 + T 72 -3.6 -5.22039 | TTACTACATTTTTTA CTAATT TTG GATTAG TTTTTTGAATTTCCG RMA_0138 132911 - 132534 - | hypothetical protein TERM 139 132776 - 132794 + g 73 -8.9 -3.21925 | AAAAACCAACTTTAT GCTGTTC CACAC GAACAGC TTCATAATCAACTAT RMA_0139 133361 - 132927 - | hypothetical protein rpmB 133727 - 134020 + | 50S ribosomal protein L28 rpmE 134011 - 134253 + | 50S ribosomal protein L31 RMA_0142 134647 - 135288 + | GTPase EngB argB 135236 - 136159 + | acetylglutamate kinase virB3 136172 - 136459 + | VirB3 virB4-1 136521 - 138965 + | VirB4 TERM 140 138980 - 139000 + F 73 -8.2 -3.54488 | overlap 138978 GATTCCTGTCTGTCA TCCCACGG CTTGA CCGCGGGA TCTTGTTTCACAGAC TERM 141 139023 - 139053 + F 83 -9.7 -3.91144 | TCACAGACTGTATTC TGAGATCCCGTGG ATAAG CCACGGGATGACA TTTGTACAATGTGAG TERM 142 139131 - 139146 + GF 72 -9 -2.77899 | opp_overlap 139127, overlap 139128 TTAGTATTAAGCTTT GCCCTA AATT TAGGGC TAGTTACTAAAACGC TERM 143 139603 - 139589 - gf 95 -2.8 -6.23545 | GGTAAATAAAAAAAA GGAATA TCA TGTTCC ATATAGTGGTAAGCC TERM 144 140757 - 140775 + GF 73 -7.4 -3.77302 | ATGATCTCGTTCTTG CTACAACC TAT GGTGGTAG TTACTTTTATGATCA virB6-1 139083 - 142493 + | VirB6 TERM 145 142540 - 142554 + G 71 -7.8 -3.5627 | GCGTCTGTAAGCTTA GCTAGC TTT GCTGGC TTTGGAGAATCATGT virB6-2 142468 - 144465 + | VirB6 virB6-3 144472 - 147372 + | VirB6 TERM 146 147453 - 147424 - f 78 -9.4 -3.2624 | opp_overlap 147443, overlap 147416 147428 147450 GAAATAATTGACGAA GCAATCTCAGGA GTTATT TCATGAGATTGC CGCGCAGCCCCATAC TERM 147 147443 - 147489 + F 77 -7.9 -4.02719 | gap 1, opp_overlap 147428 147424 147416 147450 TCTCAGGAGTTATTT CATGAGATTGCCGCGCAGCCCC ATAC GGGGCTGCTCG-CAATGACGGG TTTACTATTTAATAC TERM 148 147482 - 147450 - f 100 -14.2 -2.79915 | gap 1, opp_overlap 147443, overlap 147424 147416 AGTTATTTCATGAGA TTGCCGCGCAGCCCC ATAC GGGGCTGCTCG-CAA TGACGGGTTTACTAT TERM 149 149079 - 149093 + G 77 -8.6 -3.65351 | opp_overlap 149079 TAAGTTAGTTAAAAA TTCTGC AGT GCAGAA TTTAGCTAAAGCTGC TERM 150 149093 - 149079 - g 93 -8.6 -4.68424 | opp_overlap 149079 TAAGTTAGTTAAAAA TTCTGC AGT GCAGAA TTTAGCTAAAGCTGC TERM 151 149203 - 149213 + G 82 -5.4 -5.26875 | opp_overlap 149201 149203 CGTATATGCAAAATA GCTA TAG TAGC TTTTTTAATTAGAGA virB6-4 147547 - 150225 + | VirB6 TERM 152 154187 - 154214 + F 72 -7.2 -3.80858 | opp_overlap 154184 154187 CATATGATAAAATAA GCATATAAAAAA CAAG TTTTTTTTATGC TTTACTGGATTCTCG TERM 153 154214 - 154187 - f 79 -7.2 -4.36649 | opp_overlap 154187, overlap 154184 CATATGATAAAATAA GCATATAAAAAA CAAG TTTTTTTTATGC TTTACTGGATTCTCG TERM 154 156579 - 156559 - f 71 -8.4 -3.22877 | opp_overlap 156558 156559 CAAACGAAGAGCTAA TCATCACT GAGGA AGTGATGA AGTTTTTATAACACA TERM 155 157451 - 157434 - g 85 -4.1 -5.61881 | GTTGAAAAATAAAAA CCTCATA TTCT TATGTGG ACGTTACGAAGGGAT trmD 157072 - 157812 + | tRNA (guanine-N(1)-)-methyltransferase rplS 157839 - 158255 + | 50S ribosomal protein L19 RMA_0160 158664 - 158428 - | hypothetical protein secF 158731 - 159663 + | preprotein translocase subunit SecF nuoF 159788 - 161053 + | NADH dehydrogenase I subunit F lepB 161234 - 162037 + | Signal peptidase I TERM 156 162595 - 162581 - g 70 -4.2 -4.83169 | ATCGTCTGATAAAAA GAGAAG GAG CCTCCC ATTCATCGACTTTTA rnc 162037 - 162720 + | ribonuclease III era 162701 - 163744 + | GTP-binding protein Era TERM 157 163780 - 163826 + F 100 -22.7 -2.82635 | gap 1 ACAGGCTTTGTTGGA TGGTTTTTGATGTCATTCCCGC GAAA GCGGGAATGACA-CAAAAGCCA TATAATAATGCCAAT ruvC 163856 - 164335 + | Holliday junction resolvase RMA_0167 164328 - 165029 + | tRNA/rRNA methyltransferase RMA_0168 165396 - 165010 - | nucleotidyltransferase substrate binding protein RMA_0169 165682 - 165377 - | nucleotidyltransferase domain-containing protein RMA_0170 166784 - 165687 - | putative nucleoside-diphosphate-sugar epimerase TERM 158 166227 - 166242 + gr 89 -9 -4.29845 | TTTTTGGAGTTCCAA GTTCGC CGCG GCGAAC TTTTCGGTTACGTTG mrp 167692 - 166730 - | hypothetical protein TERM 159 167841 - 167830 - g 74 -2.2 -5.47399 | TCAATTTTAAAAAAA TCCC CATG GAGA GATTTTGATTCTGAT hflK 167794 - 168834 + | protease activity modulator HflK TERM 160 168878 - 168834 - f 84 -10.8 -3.03701 | gap 1, opp_overlap 168835 168836 168836 GGCTATTAAACCATA GGGATGCGATGTCATTCCCGC TTTC GCGGGAATGACATCG-AGCGT GTTTTTCACGCTATA TERM 161 168835 - 168877 + F 100 -14.3 -3.91908 | gap 1, opp_overlap 168834, overlap 168836 168836 GCTATTAAACCATAG GGATGCGATGTCATTCCCGC TTTC GCGGGAATGACATCG-AGCG TGTTTTTCACGCTAT TERM 162 168836 - 168876 + F 100 -17.8 -2.94422 | gap 1, opp_overlap 168834, overlap 168835 168836 CTATTAAACCATAGG GATGCGATGTCATTCCCGC TTTC GCGGGAATGACATCG-AGC GTGTTTTTCACGCTA TERM 163 168836 - 168879 + F 95 -10.5 -4.61231 | gap 2, opp_overlap 168834, overlap 168836 168835 CTATTAAACCATAGG GATGC--GATGTCATTCCCGC TTTC GCGGGAATGACATCGAGCGTG TTTTTCACGCTATAC TERM 164 169093 - 169106 + G 73 -3.9 -5.14965 | TTAAAATCCCGTTTA TTCAA AATG TTGAA TTTTTTGATAAGCGT hflC2 168927 - 169787 + | membrane protease subunit stomatin/prohibitin-like protein htrA 169810 - 171351 + | periplasmic serine protease RMA_0175 171386 - 172129 + | hypothetical protein sdhC 172282 - 172656 + | succinate dehydrogenase cytochrome b-556 subunit TERM 165 172860 - 172847 - g 74 -2.4 -5.46698 | opp_overlap 172855 TGTAAAAGCAAAAAA TAGC GGTTCT GCTA AAAGCGGTTCTCATC sdhD 172806 - 173183 + | succinate dehydrogenase hydrophobic membrane anchor protein TERM 166 173218 - 173187 - f 73 -4.4 -5.06735 | gap 1, overlap 173188 TATAAAGGATAAAAA TTGTCATACCGCGGC TTG ACCGCGGTATC-CAG AAAACAATTTATAGC TERM 167 173217 - 173188 - f 73 -7.9 -3.62414 | gap 1, overlap 173187 ATAAAGGATAAAAAT TGTCATACCGCGGC TTG ACCGCGGTATC-CA GAAAACAATTTATAG TERM 168 174959 - 174944 - g 70 -4 -4.87892 | gap 1 CTGCAAGAAAAGAAA GCA-GAG GAG CTCATGC ACGTGAAGATTATCC sdhA 173320 - 175119 + | succinate dehydrogenase flavoprotein subunit TERM 169 175207 - 175163 - f 100 -12.3 -3.98826 | overlap 175164 GCAGGAATCTAGAAA CCTTTAGTGTCATCCCGCGAT TTA ATCGCGGAATGACAAGAAAAA AATATATATAAAATA TERM 170 175206 - 175164 - f 100 -13.6 -2.98814 | overlap 175163 CAGGAATCTAGAAAC CTTTAGTGTCATCCCGCGAT TTA ATCGCGGAATGACAAGAAAA AAATATATATAAAAT yqiY 175222 - 175878 + | amino acid ABC transporter permease TERM 171 175970 - 176000 + G 90 -12 -3.51235 | opp_overlap 175971 175975, overlap 175971 175975 TAGAAATGATTGAAA ATAAAGGGTGGAAG TAT TTTCCACCCTTTAA TTATCGTATATATAA TERM 172 175999 - 175971 - g 100 -14.8 -4.26681 | opp_overlap 175970 175971 175975, overlap 175975 AGAAATGATTGAAAA TAAAGGGTGGAA GTATT TTCCACCCTTTA ATTATCGTATATATA TERM 173 175971 - 175999 + G 100 -15.5 -2.70259 | opp_overlap 175971 175975, overlap 175970 175975 AGAAATGATTGAAAA TAAAGGGTGGAAG TAT TTTCCACCCTTTA ATTATCGTATATATA TERM 174 175995 - 175975 - g 100 -11.2 -4.6951 | opp_overlap 175975 175971 175970, overlap 175971 ATGATTGAAAATAAA GGGTGGAA GTATT TTCCACCC TTTAATTATCGTATA TERM 175 175975 - 175995 + G 95 -11.9 -4.03179 | opp_overlap 175971 175975, overlap 175971 175970 ATGATTGAAAATAAA GGGTGGAAG TAT TTTCCACCC TTTAATTATCGTATA rpsL 175948 - 176427 + | 30S ribosomal protein S12 rpsG 176454 - 176936 + | 30S ribosomal protein S7 TERM 176 178718 - 178733 + G 77 -9 -3.53224 | opp_overlap 178717 178718 ACTTGCGTTTGAAAT TGCTGC AAAG GCAGCA TTTAGAGAAGGGATG fusA 176946 - 179042 + | elongation factor G TERM 177 179154 - 179171 + F 71 -2.1 -5.45652 | opp_overlap 179149, overlap 179149 TAATAACAAATATTT TTAATAA ATTT TTATTGA TTTTTTATTAAAAAT secE 179358 - 179666 + | preprotein translocase subunit SecE nusG 179679 - 180260 + | transcription antitermination protein NusG TERM 178 180399 - 180413 + F 95 -4.3 -6.15536 | opp_overlap 180399 180391 GAAATAATAAAAAAC TTCTG ATTTA CAGAA TTTTTTTTCTTCCTT rplK 180533 - 180970 + | 50S ribosomal protein L11 rplA 180970 - 181695 + | 50S ribosomal protein L1 rplJ 181806 - 182315 + | 50S ribosomal protein L10 rplL 182459 - 182887 + | 50S ribosomal protein L7/L12 TERM 179 183019 - 183050 + F 77 -3.1 -5.63517 | opp_overlap 183012 CTTAAAATCAAAAAA GCCTTATTTTAGT AATTAA ATTTGAATAAGGC TTTTTTGTTTAAAAA TERM 180 183287 - 183277 - f 72 -2.6 -5.40072 | opp_overlap 183277 CTTTTTTTAAAAAAA TAAT ATT ATTA TAATTTGTTGCAACA TERM 181 183441 - 183484 + F 74 -7.8 -3.95378 | opp_overlap 183444 183447, overlap 183445 183446 183447 183471 TTTTACTGCAAATTA TAAGCATTTTATTGAAATAG GTAT CTATTTCAATAAAAACTTTA TTGTTTAAAATATAA TERM 182 183480 - 183444 - f 75 -8.4 -3.60865 | gap 1, opp_overlap 183441 183445 183446 183447 183471, overlap 183447 TACTGCAAATTATAA GCATTTTATTGAAATAG GTAT CTATTTCAATAAAA-AC TTTATTGTTTAAAAT TERM 183 183445 - 183480 + F 76 -6.4 -4.57581 | opp_overlap 183444 183447, overlap 183441 183446 183447 183471 ACTGCAAATTATAAG CATTTTATTGAAATAG GTAT CTATTTCAATAAAAAC TTTATTGTTTAAAAT TERM 184 183446 - 183479 + F 82 -9.9 -3.33464 | opp_overlap 183444 183447, overlap 183445 183441 183447 183471 CTGCAAATTATAAGC ATTTTATTGAAATAG GTAT CTATTTCAATAAAAA CTTTATTGTTTAAAA TERM 185 183447 - 183478 + F 100 -13.4 -2.59355 | opp_overlap 183444 183447, overlap 183446 183445 183441 183471 TGCAAATTATAAGCA TTTTATTGAAATAG GTAT CTATTTCAATAAAA ACTTTATTGTTTAAA TERM 186 183478 - 183447 - f 100 -13.4 -2.92144 | opp_overlap 183447 183446 183445 183441 183471, overlap 183444 TGCAAATTATAAGCA TTTTATTGAAATAG GTAT CTATTTCAATAAAA ACTTTATTGTTTAAA TERM 187 184059 - 184077 + G 73 -9 -3.24289 | AAGTTATGCTGCTCC TCTTAAAG TGA CTTTAAGA TTAAGTATTTGGGAT TERM 188 187324 - 187334 + G 74 -5.4 -4.83169 | opp_overlap 187324 GAAAGACCGGAAGAA GAGA TTA TCTC TTTTTGTAAGAAAGT TERM 189 187767 - 187788 + G 73 -7.3 -3.98159 | CGGTGAAAATAATTT TGAATCAGG CATT CCTGAATCA TTTAATGTTATGATA rpoB 183736 - 187857 + | DNA-directed RNA polymerase subunit beta TERM 190 187853 - 187837 - f 75 -9.5 -2.84878 | overlap 187836 TGTCTTAACGTAAAG CTTGAAG TAA CTTCAAG TTAAGAAAGATAGGT TERM 191 187877 - 187902 + F 95 -10.7 -4.30978 | opp_overlap 187877 GATAGGTCATTTAAA CAGATAAAAAA CAAG TTTTTTATCTG TTTTACTGGATTCCC TERM 192 187902 - 187877 - f 87 -10.7 -3.66378 | opp_overlap 187877 GATAGGTCATTTAAA CAGATAAAAAA CAAG TTTTTTATCTG TTTTACTGGATTCCC rpoC 188111 - 192235 + | DNA-directed RNA polymerase subunit beta' TERM 193 192393 - 192423 + T 73 -9.1 -2.80113 | gap 1, opp_overlap 192388 192386 ATAAAAAACCCGTCA TTGCGA-GCCAGCA TTTA TGCTGGCATGGCAA TCTCATGAAATAATA TERM 194 192605 - 192577 - T 100 -16.3 -5.96219 | opp_overlap 192577 TATTGACAAAAAAAA GCCTATAAAAAAC TTG GTTTTTTATAGGC TTTTTCTTATTTCCC TERM 195 192577 - 192605 + T 100 -16.3 -5.38549 | opp_overlap 192577 TATTGACAAAAAAAA GCCTATAAAAAAC TTG GTTTTTTATAGGC TTTTTCTTATTTCCC RMA_0191 193814 - 192639 - | hypothetical protein TERM 196 192787 - 192801 + g 70 -4.3 -4.72846 | TCATATGGGAAGTTT TCAAG TGTTT CTTGA TTTTTAGATATCTGA TERM 197 194507 - 194519 + G 73 -4.1 -5.00884 | overlap 194506 AATCAAAAAATTAAT TGCTG AAG CAGTA TTTTTTACAAGAGAT pepA 193974 - 195476 + | leucyl aminopeptidase TERM 198 195748 - 195763 + G 71 -7.6 -3.5399 | ATGAGAAAGGCGGAG CAGGTA AAAC TACCTG TTCTATGCATCTAAT RMA_0193 195663 - 196478 + | chromosome partitioning protein-like protein RMA_0194 196555 - 197025 + | hypothetical protein TERM 199 198482 - 198504 + G 79 -10.6 -2.90496 | overlap 198479 AGCCATAATCCGTTT TCTATGCCGC AGG GCGGAATAGA TGCTTTAGAGCAAGC TERM 200 198875 - 198863 - g 76 -7.7 -4.02334 | overlap 198872 TATGTAGAGGATAAA GCTCT AAA AGAGC TAAGCATTATGCTCT aspS 197102 - 198925 + | aspartyl-tRNA synthetase TERM 201 199094 - 199078 - T 75 -9.4 -2.87132 | TTTTTTTTCTAGATA CCGTGG TCAAG CCACGG TATGACAGCGAAAAG RMA_0196 201331 - 199193 - | hypothetical protein TERM 202 201047 - 201071 + g 78 -2.2 -5.70522 | TATTTCCCTTAATTC CTTGTTTTTA TCCCC TGGAAACGAG TTTTTTATTATTGTT TERM 203 201424 - 201438 + r 91 -4.3 -6.04419 | opp_overlap 201417 201424 GCAATCCAGTAAACA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 204 201584 - 201563 - R 74 -7.9 -3.8062 | CAAGCCGTACAACAA TGCCCCCGC TTTT GCGGGGATA TGACATCGAGGTCTT RMA_0197 202450 - 201701 - | integral membrane protein, interacts with FtsH TERM 205 202125 - 202113 - G 73 -9.1 -2.95388 | TATGCAAGCGACATA CCGGT TAA ACCGG CATAAACCCAAAATA dapB 203342 - 202485 - | dihydrodipicolinate reductase TERM 206 202584 - 202573 - G 71 -3 -5.1244 | GCACCAATAGAAAAA GAAT TTTT ATTC AGAGCTTCGTGTTTT TERM 207 202711 - 202733 + g 72 -2.8 -5.27477 | overlap 202712 CTTAGTCTATTACCA CGATTAAATG TTA TATTTAATCC TTTTTTGCTTGCGAT RMA_0199 203946 - 203467 - | flavoprotein oxygenase DIM6/NTAB family protein yqiX 204662 - 203931 - | amino acid ABC transporter substrate-binding protein gatB 206319 - 204832 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 208 205180 - 205206 + g 83 -9.6 -3.71527 | overlap 205187 TAATTTTACCAGTTT TGCAAAGTTACT AGG GGTAATTTTGCA TTCATTTATTCCTAT gatA 207806 - 206319 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 209 207627 - 207639 + g 80 -9.1 -3.65542 | overlap 207626 AGCATAATTTTGATC GGCTG CTT CAGCC TGTTTTAAAGCTAAG gatC 208141 - 207803 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 210 208741 - 208777 + r 87 -7.6 -4.83615 | opp_overlap 208751, overlap 208751 CTTGATTGAGGGATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTATGGACCCTG TERM 211 208751 - 208767 + r 86 -3.8 -5.80727 | opp_overlap 208751, overlap 208741 GGATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT rrf 209474 - 208908 - | ribosome recycling factor TERM 212 209609 - 209643 + r 88 -6.7 -5.13741 | opp_overlap 209611 TTTGACGAAGCAATC TAGTAAAAAATTCTG ATTTA CAGCATTTTTTATTA TTTTTGTTAGATTGG pyrH 210513 - 209761 - | uridylate kinase TERM 213 210074 - 210064 - G 83 -8.2 -4.37092 | ATCGGTTGTACAAAA CGGG TTA CCCG TACCGCCGGCAAAAA mnhE 210827 - 210498 - | putative monovalent cation/H+ antiporter subunit E emrB 212379 - 210805 - | MFS-type multidrug resistance protein B TERM 214 212008 - 211977 - G 79 -5.2 -5.1286 | gap 1 GAAAAAGTATAAAAA CGGTACTA-AAGACC GTC GGTATCATAGCACCG CCAAAAAAGCCTTGT TERM 215 212323 - 212312 - G 85 -4.4 -5.59357 | opp_overlap 212312, overlap 212321 ACCATACCAAAAAAA GCAA ATAA TTGC TTTTTAGAAAGAGCA RMA_0208 212589 - 212798 + | hypothetical protein TERM 216 212834 - 212799 - T 71 -7.8 -3.41002 | gap 1, opp_overlap 212807, overlap 212801 212805 ATAATAGTTAATTAA CACGAATAGCGAATTAT TAC ATAATCTGCTATTCG-G CTTAAGAAGTTGAAT TERM 217 212833 - 212801 - T 88 -11.5 -3.26767 | opp_overlap 212807, overlap 212799 212805 AATAGTTAATTAACA CGAATAGCGAATTAT TAC ATAATCTGCTATTCG GCTTAAGAAGTTGAA TERM 218 212945 - 212961 + T 71 -3 -5.26119 | opp_overlap 212937, overlap 212946 CAAAATATAATGGAA TTACCT AAAAA AGGTAG TTTTGTTTTTACACC RMA_0209 214016 - 213426 - | hypothetical protein omp1 217052 - 214746 - | Outer membrane protein omp1 RMA_0211 218370 - 217291 - | putative membrane-associated zinc metalloprotease TERM 219 217949 - 217971 + g 83 -10.6 -3.21395 | opp_overlap 217970, overlap 217947 TCTGCTCTCTCTGCC GGTGATGAAG CTA CTACATCACC TATTATAGGAGGAAT TERM 220 218517 - 218537 + H 71 -8.5 -2.92275 | opp_overlap 218516 218519, overlap 218516 218515 218519 218526 GAAGTAATCCAAATG TATTAGTTT TAA AAACTAATA GTATTTATGTTTTTT nusB 218650 - 219120 + | transcription antitermination protein NusB rrmJ 219124 - 219942 + | ribosomal RNA large subunit methyltransferase J RMA_0214 221102 - 220005 - | hypothetical protein TERM 221 221092 - 221104 + g 85 -6.3 -5.24531 | opp_overlap 221087, overlap 221087 TTTTGATCAATTTTA CCATA AAA TATGG TTTTTTCTAAAAAAT TERM 222 221512 - 221498 - g 70 -4.3 -4.73297 | overlap 221511 TAATGAACAAATAAA GCTTT TTACT AAAGC TCATGAAGCAACTAA RMA_0215 221253 - 222206 + | hypothetical protein TERM 223 222231 - 222260 + T 100 -15.3 -5.68438 | opp_overlap 222233 222237 ACAAAACTTTCTAGA GAGTAAGGTTATA GATC TATAACCTTACTC TTTTTTATTTAATAA TERM 224 222258 - 222233 - T 88 -12.1 -2.89323 | opp_overlap 222231, overlap 222237 AAAACTTTCTAGAGA GTAAGGTTATA GATC TATAACCTTAC TCTTTTTTATTTAAT RMA_0216 222705 - 222265 - | oligoketide cyclase/lipid transport protein RMA_0217 223025 - 222705 - | hypothetical protein TERM 225 223191 - 223178 - gR 74 -5.3 -4.72846 | opp_overlap 223168, overlap 223168 CGATATAGGTAAAAA TAACC TATC GGTTA GACTTAAAGAACAGT RMA_0218 222879 - 223730 + | hypothetical protein TERM 226 223804 - 223830 + Tr 72 -8.8 -3.0806 | opp_overlap 223803 223809, overlap 223809 GCTGCTCGTAATGAC GAAAAGGTAGAG TTA CTTCACCTTTTC TATTCCGGGTTTACA RMA_0219 224052 - 223816 - | hypothetical protein acrF 227364 - 224305 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 227 225224 - 225250 + g 71 -6.6 -4.22041 | overlap 225225 225231 CGGTTGACTTCTATA CTTATAGTCGGC ATT GCCGATTGTAAA TTTCTATTGACGTTT TERM 228 225225 - 225249 + g 77 -10.1 -3.1214 | overlap 225224 225231 GGTTGACTTCTATAC TTATAGTCGGC ATT GCCGATTGTAA ATTTCTATTGACGTT TERM 229 225231 - 225243 + g 79 -9.1 -3.51721 | overlap 225225 225224 CTTCTATACTTATAG TCGGC ATT GCCGA TTGTAAATTTCTATT TERM 230 227267 - 227253 - G 85 -4.2 -5.75342 | overlap 227255 GTTTGGTAAAAAAAA TTGCTC CAA GAGCTA CGATAACCAAATTCA hupA 227724 - 228143 + | DNA-binding protein HU TERM 231 228248 - 228216 - f 89 -7.7 -4.95155 | GTGACACTAGAAAAA CCGGCTCATGCAA CAATGCT CTGCAAAAGCCGG AATGATATAGCATAC holB 228280 - 229092 + | DNA polymerase III subunit delta' ffh 229297 - 230655 + | Signal recognition particle protein TERM 232 230710 - 230733 + F 71 -8.4 -3.18517 | opp_overlap 230709 230712, overlap 230709 230706 AGAAATCCAGTCAAG CATATAAAAA CAAG TTTTTATATG GTTATTTTATCAAGT TERM 233 232123 - 232148 + F 77 -9.9 -2.69151 | gap 1, overlap 232114 232119 TTAAGCTAGCTTTAT CGCT-ATCTTCT TTT AGAAGATCAGCG TAGTGTATGGCAACA TERM 234 232329 - 232311 - f 70 -6.2 -4.21194 | CTTTAGTATCTAAAA TATAATTA TCG TAATTATA AAAATCCTTGTCTGC TERM 235 232598 - 232616 + F 73 -4.6 -5.02476 | TAATTTTCCGCTACT TGTTTTTG GCT CAAAACCA TTTTTTACAACATCT TERM 236 233452 - 233484 + G 76 -3.6 -5.38054 | gap 1, overlap 233481 AAATATGAGAGTTAT GGCTAATG-ATTTAA GTAT TTATATTCATTGGCC TTTTTGTTTGTCAAA TERM 237 233996 - 233981 - g 71 -5.4 -4.61824 | CAAGAAGAATTAAAA CAAGCT ATGC AGCTCG CTACCTCGCATATTT hemN 233432 - 234598 + | coproporphyrinogen III oxidase TERM 238 234611 - 234631 + T 72 -2.7 -5.44198 | TGAAAATTATTCAAG TAATTTTAA AGT TTATAATTA TTTTTATTATTTCTT TERM 239 235508 - 235498 - T 71 -5.4 -4.65916 | GTCATTGCAAGAAAA TTGC ATA GCAA TTGACGAAGTAAGGA TERM 240 235534 - 235548 + T 91 -4.3 -6.04419 | opp_overlap 235534 235529 AAGGAAGAGACAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 241 235575 - 235596 + T 75 -8.1 -3.72231 | gap 1, overlap 235577 235590 TTTTTTGGAGAGTGC CAT-GCAGTC TAC GACTGCGATG TTGTTGCATGTATCA TERM 242 236592 - 236602 + T 75 -2.6 -5.53991 | CATAGGGAGGAGTCA TTAT ATT ATAA TTTTTTTGATCGATA gltP 238388 - 237186 - | Na+/H+-dicarboxylate symporter TERM 243 237397 - 237373 - G 70 -7 -3.82031 | overlap 237375 237388 GGAAGCATTATCAAA GAGGCACCGG GAATA CCGGCACCAC CGATAGATCCAAGTG TERM 244 237395 - 237375 - G 72 -8.2 -3.4914 | overlap 237373 237388 AAGCATTATCAAAGA GGCACCGG GAATA CCGGCACC ACCGATAGATCCAAG TERM 245 237973 - 237963 - G 76 -4 -5.38348 | AAAAATAGCAAAAAA TACA ACT TGTA AGACATCACCGTTTG TERM 246 238175 - 238165 - G 90 -8.2 -5.1101 | opp_overlap 238165 GTAGTACCTAAAAAA GCGG CTA CCGC TTTCATTCCTACTCT TERM 247 238165 - 238175 + g 79 -8.2 -3.97444 | opp_overlap 238165 GTAGTACCTAAAAAA GCGG CTA CCGC TTTCATTCCTACTCT cutA 238740 - 238426 - | periplasmic divalent cation tolerance protein RMA_0237 239165 - 238743 - | putative 6-pyruvoyl tetrahydropterin synthase TERM 248 239317 - 239290 - R 73 -9.2 -2.80113 | gap 1, opp_overlap 239285 239284 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACAATTTTTTACA sucB 240533 - 239328 - | dihydrolipoamide acetyltransferase TERM 249 240608 - 240594 - R 82 -10 -3.31144 | overlap 240604 TCGTCATTGCGAGAA GACGCT ATA AGCGTC GACGAAGCAATCTCA TERM 250 240609 - 240649 + r 77 -9.1 -3.20722 | gap 1, opp_overlap 240604 240615 240619, overlap 240608 GACGCTATAAGCGTC GA-CGAAGCAATCTCAGG CAAATT CCTGAGATTGCCACGCTC CTTTTAGTCGTTCGC TERM 251 240642 - 240615 - R 100 -14.3 -3.15758 | opp_overlap 240609 240608, overlap 240604 240619 ATAAGCGTCGACGAA GCAATCTCAGG CAAATT CCTGAGATTGC CACGCTCCTTTTAGT TERM 252 240638 - 240619 - R 71 -7.9 -3.39895 | opp_overlap 240609 240608, overlap 240615 GCGTCGACGAAGCAA TCTCAGG CAAATT CCTGAGA TTGCCACGCTCCTTT sucA 243481 - 240695 - | alpha-ketoglutarate decarboxylase TERM 253 244232 - 244250 + r 74 -9.6 -2.64155 | opp_overlap 244231 244229 244225 244232, overlap 244229 244229 TCCATAAATAAAGAT TGGCTTTC ATG GAAGGCCA TACCTTTAGCAAGCC recN 246223 - 244574 - | DNA repair protein RecN TERM 254 245563 - 245590 + g 93 -5.7 -6.09888 | overlap 245566 AATCCTTATCTTTAT TTTGCAAATCT TTTCGT AGATTTGCTAA TTTTTTTTCTTCACC TERM 255 245566 - 245587 + g 71 -7.4 -3.69221 | overlap 245563 CCTTATCTTTATTTT GCAAATCT TTTCGT AGATTTGC TAATTTTTTTTCTTC comL 246974 - 246219 - | DNA uptake lipoprotein dnaJ 248670 - 247546 - | hypothetical protein TERM 256 247863 - 247881 + g 76 -7.5 -3.95787 | opp_overlap 247863 247862 247850 TAGGTAGTTTACAAT GTAGATG TGCTC CATCTAC TTTATAAATATCATG dnaK 250797 - 248797 - | molecular chaperone DnaK TERM 257 248978 - 249009 + gH 70 -8 -3.0558 | opp_overlap 248976 248987 TCCGACTCAAGCACG GCTTTTAAAGCGGC TAGT GCTGCTTCAACAGC TCCTTTATCGTCTGA TERM 258 250919 - 250907 - gR 72 -9.1 -2.68223 | overlap 250906 GATCGATACTAGAAT TGCCG TAT CGGCA TATGACGATACAAGT RMA_0247 250743 - 252236 + | heat shock protease TERM 259 253705 - 253719 + Tr 74 -5.8 -4.65838 | overlap 253709 TTTTATCTACACCGT GAATTT GAA AAATTC TTTTTGCAATATCTA TERM 260 253937 - 253964 + Tr 73 -9.2 -2.80113 | gap 1, opp_overlap 253933 253932, overlap 253961 ATACTAAAACCGTCA TTGCGA-GCAGCC TTA GGCTGCGTGGCAA TCTCATGAAATAATA TERM 261 254796 - 254752 - TR 75 -9.6 -2.84 | opp_overlap 254746, overlap 254749 ATTATCGGACAAGCA TCTTCCTTGTAAATTTAACA TAGAG TATTAGATTTGCAAGGAAGA TATAGAGAGTTCTTT TERM 262 254843 - 254821 - TR 100 -9.2 -5.4505 | opp_overlap 254820 TTCTTTAATAAAAAA CGGTAAGTAT GTA AAACTTACCG ATTAAATTTAAAGCT RMA_0250 255243 - 254866 - | hypothetical protein RMA_0251 255413 - 255895 + | hypothetical protein holA 255903 - 256877 + | DNA polymerase III subunit delta coq7 256983 - 257549 + | ubiquinone biosynthesis protein coq7 TERM 263 258360 - 258372 + G 74 -6.3 -4.3587 | CTGCAGGGATTATTT CAGTA GGT TACTG TTTATATTCTTGGTG coxC 258176 - 259027 + | cytochrome c oxidase subunit III virB2 259135 - 259545 + | VirB2-like protein TERM 264 259576 - 259601 + T 100 -14.9 -5.2853 | opp_overlap 259576 TTATATCTTTAGTAA TACCCATAAGC CGAA GCTTATGGGTA TTTTATTTTTAAGTG TERM 265 259601 - 259576 - T 100 -14.9 -3.16191 | opp_overlap 259576 TTATATCTTTAGTAA TACCCATAAGC CGAA GCTTATGGGTA TTTTATTTTTAAGTG TERM 266 259815 - 259792 - T 70 -4 -5.05606 | opp_overlap 259792, overlap 259788 TTTAATAAAAATAAA CATATAAAAA CAAG TTTGTATATG TTTTACTGAATTCCC RMA_0256 260611 - 259979 - | hypothetical protein TERM 267 260746 - 260709 - g 82 -7.9 -4.49556 | opp_overlap 260708 CTCTTATTAAAGAAA TTGAAGAAGCTTGGC AAATGAAG GACAAACTTCTTCAA GATTCTTCAAAGCTT dapD 260663 - 261511 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 268 261648 - 261625 - T 90 -8.4 -4.87892 | opp_overlap 261625, overlap 261609 GTTTAACAAAATAAA CATATAAAAA TAAA TTTTTATATG TTTTACTGGATTCCG TERM 269 261625 - 261648 + T 83 -8.4 -4.30978 | opp_overlap 261609 261625 GTTTAACAAAATAAA CATATAAAAA TAAA TTTTTATATG TTTTACTGGATTCCG pbpC 266051 - 263634 - | bifunctional penicillin-binding protein 1C TERM 270 265143 - 265157 + g 71 -8.6 -3.08726 | overlap 265142 AATAAGAATTACGGA GGCATT ATT AATGCC ATATTTTTTCCGATC TERM 271 266836 - 266821 - R 73 -7.6 -3.65809 | overlap 266819 AATAATGAAATAATA GAAGTC ACTA GACTTC AAGCAGTTGCTCTTG TERM 272 268699 - 268686 - R 70 -4.5 -4.77173 | opp_overlap 268686 TTTTTACAAAATAAA GCTGC ACCG GCAAC ATTATCAAGAATTTA TERM 273 268981 - 268950 - R 90 -9.4 -4.2679 | opp_overlap 268948 268950, overlap 268959 GAAGCGGTATTAAAA GGAGTAAAAGCAGC GAAA GCTGCTAATACCCC TGTTTGTGGCACCGG TERM 274 268972 - 268959 - R 85 -8.1 -4.42667 | opp_overlap 268950 268948, overlap 268950 TTAAAAGGAGTAAAA GCAGC GAAA GCTGC TAATACCCCTGTTTG TERM 275 270116 - 270106 - R 71 -5.4 -4.62471 | TGGAAGTTGTAAAAA TGCA AAA TGCA GTAAAACAAGACGAA TERM 276 271134 - 271165 + r 80 -5.5 -5.31456 | gap 1, opp_overlap 271142, overlap 271142 GACGAAGCAATCCAG TAAA-AAAATGCTA TAAAT TAGCATTTTTTTTA TTTTTTGTGGATTGC TERM 277 271142 - 271156 + r 95 -4.3 -6.47325 | opp_overlap 271142, overlap 271134 AATCCAGTAAAAAAA TGCTA TAAAT TAGCA TTTTTTTTATTTTTT TERM 278 271156 - 271142 - R 83 -4.3 -5.54894 | opp_overlap 271142 271134 AATCCAGTAAAAAAA TGCTA TAAAT TAGCA TTTTTTTTATTTTTT uspA 271708 - 271262 - | universal stress protein UspA imp 272710 - 271718 - | TRAP-type uncharacterized transport system, periplasmic component TERM 279 271961 - 271982 + gr 70 -2.3 -5.28831 | overlap 271965 TAGGCCCTTATGAAG TATGGCTTT ATGA AAAGCTCTA TTTTGTTTTATTACT RMA_0268 273728 - 272664 - | hypothetical protein fdxB 274079 - 273732 - | ferredoxin hscA 275931 - 274141 - | chaperone protein HscA hscB 276419 - 275919 - | co-chaperone HscB rnhB 276478 - 277062 + | ribonuclease HII TERM 280 277094 - 277121 + T 73 -9.2 -2.80113 | gap 1 GACACTGAATCGTCA TTGCGA-GCAGCC ATA GGCTGCGTGGCAA TCTCATAAAATAATA TERM 281 277242 - 277252 + T 71 -5.4 -4.68593 | CAACTCGAGTGCCGC CTCT TCT AGAG TTTTTAGCTGATCAC uvrB 279206 - 277221 - | excinuclease ABC subunit B grxC1 279276 - 279587 + | GrxC family glutaredoxin TERM 282 281017 - 280996 - g 81 -10.9 -2.69813 | opp_overlap 280995, overlap 280995 AGGATATACGAGAAG TCACGCAGC AATC GCTGCGTAA ATCTATTGGAATTGT atm1 279732 - 281522 + | multidrug resistance protein Atm1 gyrA 281875 - 284595 + | DNA gyrase subunit A TERM 283 284717 - 284768 + F 85 -10.8 -3.33696 | gap 1, opp_overlap 284720 284721, overlap 284718 TTGCGTGGACCGGTA AAAC-CCACTGTGTCACCCCGTGGT CAC ACCACGGGATGACACAGAGGTGAAA TTGATTCACGCAACA TERM 284 284718 - 284767 + F 100 -14.3 -2.60075 | gap 1, opp_overlap 284720 284721, overlap 284717 TGCGTGGACCGGTAA AAC-CCACTGTGTCACCCCGTGGT CAC ACCACGGGATGACACAGAGGTGAA ATTGATTCACGCAAC TERM 285 284764 - 284720 - f 100 -23.7 -4.11216 | opp_overlap 284718 284717, overlap 284721 CGTGGACCGGTAAAA CCCACTGTGTCACCCCGTGGT CAC ACCACGGGATGACACAGAGGT GAAATTGATTCACGC TERM 286 284763 - 284721 - f 100 -27.2 -3.06515 | opp_overlap 284718 284717, overlap 284720 GTGGACCGGTAAAAC CCACTGTGTCACCCCGTGGT CAC ACCACGGGATGACACAGAGG TGAAATTGATTCACG RMA_0278 286635 - 286823 + | hypothetical protein def1 287270 - 287800 + | peptide deformylase TERM 287 288127 - 288155 + G 73 -9.5 -2.80074 | opp_overlap 288136 CCATCCGATTTGCCT CGTCACAGAGGAG CGG CTCCTCTGCAGCG TACTATTATAGAGGG fmt 287797 - 288705 + | methionyl-tRNA formyltransferase TERM 288 288951 - 288930 - T 84 -10.9 -3.02568 | overlap 288927 CTCAATATGAAATTA GCGGCTTTA TTAA CAAAGCCGC CGAACATATAAACGA n2B 294923 - 293862 - | putative ATPase n2B TERM 289 294250 - 294271 + g 71 -3.1 -5.1361 | opp_overlap 294248 294260, overlap 294260 TGAGGAGCAAGATTA TTATCAC TAATATCC GTGATAA TTTTTTCAAGTTTGT TERM 290 295051 - 295065 + H 93 -5 -6.04419 | opp_overlap 295051 295052, overlap 295052 GGATCCAGTGAAAAA TGCTAA CCT TTAGCG TTTTTTTGTTATTTT TERM 291 295052 - 295064 + H 70 -6.3 -4.17161 | opp_overlap 295051 295052, overlap 295051 GATCCAGTGAAAAAT GCTAA CCT TTAGC GTTTTTTTGTTATTT TERM 292 296836 - 296804 - g 73 -8.5 -3.31598 | opp_overlap 296807 296812 AGAAAGGGATAGTAA GGCTTTTACTTGCAC AAG GTGCAAATATAATCC TTGACCACAACAGAG RMA_0292 296560 - 296859 + | ankyrin repeat-containing protein TERM 293 296852 - 296862 + F 79 -6.8 -4.59773 | opp_overlap 296851 296849 296847 296852 TTGACCACAACAGAG CGGT ATG ACCG TTTTTCACACTGCCC RMA_0293 297022 - 297291 + | hypothetical protein abcT3 299399 - 297576 - | multidrug ABC transporter ATP-binding protein TERM 294 297964 - 297977 + g 72 -8.1 -3.50869 | ACATCATGAATATGT GCAGC TTTT GCTGC TTCTATAACCTCCTC TERM 295 298229 - 298244 + g 81 -7.6 -4.32177 | overlap 298242 CTACTTTTTGTTTAC TCGGTA TTAA TACCGA TTTATTATAAAATAG RMA_0295 299507 - 299800 + | hypothetical protein TERM 296 301140 - 301129 - g 77 -5.8 -4.67556 | ATAATATTTTAAAAA CCGT GGAT ACGG TATCACCGGTACTCG cydA 299952 - 301322 + | cytochrome d ubiquinol oxidase subunit I TERM 297 301382 - 301393 + G 70 -4.4 -4.69487 | TTTGGGGTGTGCTTA TAGC TACC GCTA TTTGTTTATATGTTT cydB 301330 - 302349 + | cytochrome d ubiquinol oxidase subunit II RMA_0298 302479 - 302793 + | antitoxin of toxin-antitoxin (TA) system StbD RMA_0299 302804 - 303064 + | putative toxin of toxin-antitoxin (TA) system StbD TERM 298 303505 - 303489 - g 86 -8.1 -4.73682 | TTGTATAATACAAAA TTTGCAA GCT TTGCAAA TACCGTAAATAGTAC lgtF 303048 - 303905 + | Beta 1,4 glucosyltransferase TERM 299 303929 - 303885 - f 79 -10.1 -2.9059 | opp_overlap 303917, overlap 303884 AGCGACTATAAGAAG CGTGGCAATCTCATGAAGT AATATAA AATTCCTGAGATTGCCGCG TCGATGCTATGCATC mpp 303907 - 305220 + | protease purC 305374 - 306084 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 300 306240 - 306213 - f 73 -9.2 -2.80443 | gap 1, opp_overlap 306207, overlap 306187 GGATATTTGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTAGGTGTC TERM 301 306938 - 306968 + G 100 -15.7 -3.19442 | overlap 306932 306929 CTCTGATACTGCTTT CTTTGTCAAACCA GAGTA TGGTTTGACAAAG TTAGATATATTGAAT RMA_0303 306306 - 307901 + | hypothetical protein TERM 302 307948 - 307898 - f 93 -9.4 -4.71791 | gap 3 AGATCAAGAAAGAAA GTAGTCTTCTAAGTGTCATTCCTGC TTTT GCAGGAATGACA-TAAG-AG-CTAC GAGATAAGGTCCACA TERM 303 308870 - 308860 - g 76 -6.8 -4.62904 | opp_overlap 308851 AAAGATTCGTAAAAA CGGT TAT ACCG AAGTTAAGACTCCTG TERM 304 309788 - 309765 - g 76 -3.9 -5.26875 | TTTCTAATCAAAAAA TACCGATGA TTGCAG TAATCGGTA AACAAGAGCAAGAAA thrS 307952 - 309907 + | threonyl-tRNA synthetase TERM 305 309966 - 309952 - f 71 -8.6 -2.83255 | overlap 309944 309963 ATAATACGTATCATA GGGATA TGA TATCCC AATTAGGAAAAATCC TERM 306 310072 - 310061 - f 81 -3 -5.8187 | TATCCAAGAAAAAAA TATC AAGA GATA AGATTATGGGGCAAG TERM 307 312978 - 312963 - g 70 -4.6 -4.78848 | TTGGGAAATAGAAAA TGCCGC CAAA GCTGCA AATATCCATGAATTT RMA_0307 312622 - 313197 + | ABC transporter ATPase TERM 308 314267 - 314292 + T 80 -9.2 -3.75053 | opp_overlap 314264 314263 AGTGAAAAAAGCTTA CTATTTAGGA ATAAAC TCCTAAATAG TTATATTAGTATATA RMA_0308 314988 - 314386 - | hypothetical protein TERM 309 314674 - 314701 + g 91 -4.2 -5.82316 | opp_overlap 314676, overlap 314676 314688 ATTTGGCGAATCATC AATATTACCTCC TTCA GCAGGTAATATA TTTTTTTTACGTGCT TERM 310 314676 - 314699 + g 76 -6.8 -4.5536 | opp_overlap 314676, overlap 314674 314688 TTGGCGAATCATCAA TATTACCTCC TTCA GCAGGTAATA TATTTTTTTTACGTG TERM 311 315900 - 315918 + H 73 -7.6 -3.65963 | opp_overlap 315899 315900 AAGCTTTTGTAAAAC CTTTTAAT TTT ATTAAAAG TCTTTGTAGTTCTTC TERM 312 316772 - 316752 - g 72 -8.3 -3.36313 | AAGTAGATATAGCAA CCGCAAG AGCGGGG CTTGCGG CAGCAGAAACGAATA tolC 316202 - 317563 + | Type I secretion outer membrane protein TolC RMA_0313 317565 - 317951 + | hypothetical protein RMA_0314 318146 - 319891 + | ankyrin repeat-containing protein TERM 313 321241 - 321229 - g 73 -4.1 -4.92791 | GAGAATATAATAAAA GATCA TTT TGACC ATTTTCTTAGTAGAG parE 320101 - 322089 + | DNA topoisomerase IV subunit B TERM 314 323100 - 323122 + G 73 -8.4 -3.56092 | GGTAATTCTGCCTCT GCTTCGGAAA TAG TTGCCGGAGC TTTGCAAGATCATAA ctp 322089 - 323567 + | carboxyl-terminal protease TERM 315 324304 - 324314 + G 74 -5.4 -4.72497 | AGTGATTTAACAGTG GAAG AGG CTTC TTTTGTTACTAGCTA TERM 316 324712 - 324696 - g 70 -2.4 -5.27769 | AGAAAAAAGTAAAAA TTATAT TAAAG ATATAA ATGATGCCGGTAAGC barA 323779 - 325275 + | histidine kinase sensor protein TERM 317 325988 - 325960 - g 95 -6.8 -5.95166 | opp_overlap 325960 GCGAACTAAAAAAAA CTCAGGAAGCAT GTAAT ATGCTTGCTAAG TTTGATAACGAATTT RMA_0318 325326 - 326078 + | hypothetical protein RMA_0319 326091 - 326756 + | hypothetical protein RMA_0320 326746 - 328020 + | WD-40 repeat-containing protein rplM 328110 - 328580 + | 50S ribosomal protein L13 rpsI 328587 - 329066 + | 30S ribosomal protein S9 TERM 318 329837 - 329818 - f 84 -10 -3.55563 | overlap 329819 AGCTGATGGTTCAAA CCTCCACC TTCA GGTGGAGA AACTTTAGTTTGAAT TERM 319 329836 - 329819 - f 86 -11.3 -2.73124 | overlap 329818 GCTGATGGTTCAAAC CTCCACC TTCA GGTGGAG AAACTTTAGTTTGAA RMA_0323 329903 - 330346 + | transposase TERM 320 330366 - 330380 + F 79 -10 -2.79183 | TAGCTTAAACTCTAC GGCACT TCT AGTGCC TATCATCAACCTACC TERM 321 330385 - 330419 + F 70 -7.3 -3.59627 | gap 2, opp_overlap 330390 330391, overlap 330387 330391 CTTCTAGTGCCTATC ATCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGAG TTTAACAAGTTTAAT TERM 322 330387 - 330414 + F 77 -9.2 -3.27704 | gap 1, opp_overlap 330390 330391, overlap 330385 330391 TCTAGTGCCTATCAT CAACCTACCGGCT CTC AGCCGGTAG-TGG TTGAGTTTAACAAGT TERM 323 330412 - 330390 - f 89 -12 -3.21218 | opp_overlap 330387 330385 330391, overlap 330391 AGTGCCTATCATCAA CCTACCGGCT CTC AGCCGGTAGT GGTTGAGTTTAACAA TERM 324 330411 - 330391 - f 100 -15.5 -2.52516 | opp_overlap 330387 330385 330391, overlap 330390 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTTAACA TERM 325 330391 - 330411 + F 100 -15.5 -2.81888 | opp_overlap 330391 330390, overlap 330387 330385 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTTAACA RMA_0325 331134 - 331445 + | putative pterin-4-alpha-carbinolamine dehydratase RMA_0326 331914 - 332243 + | hypothetical protein TERM 326 332496 - 332444 - T 77 -8.1 -3.91984 | opp_overlap 332449 332451 332453 332459, overlap 332448 332449 332451 332459 332463 AGAGGCTCTAAATAA TTAAGTATAGTAAAAGAAATTGAAC ATA ATTCAACTTCTTTTACTATATATAT AAAATTTTTACTGAA TERM 327 332492 - 332448 - T 100 -13.3 -3.61652 | opp_overlap 332449 332451 332453 332459, overlap 332444 332449 332451 332459 332463 GCTCTAAATAATTAA GTATAGTAAAAGAAATTGAAC ATA ATTCAACTTCTTTTACTATAT ATATAAAATTTTTAC TERM 328 332449 - 332491 + T 100 -13.9 -2.96009 | opp_overlap 332448 332444 332449 332451 332459 332463, overlap 332451 332453 332459 CTCTAAATAATTAAG TATAGTAAAAGAAATTGAA CATAA TTCAACTTCTTTTACTATA TATATAAAATTTTTA TERM 329 332491 - 332449 - T 100 -16.8 -2.76509 | opp_overlap 332449 332451 332453 332459, overlap 332448 332444 332451 332459 332463 CTCTAAATAATTAAG TATAGTAAAAGAAATTGAAC ATA ATTCAACTTCTTTTACTATA TATATAAAATTTTTA TERM 330 332489 - 332451 - T 100 -15 -2.92158 | opp_overlap 332449 332451 332453 332459, overlap 332449 332448 332444 332459 332463 CTAAATAATTAAGTA TAGTAAAAGAAATTGAAC ATA ATTCAACTTCTTTTACTA TATATATAAAATTTT TERM 331 332451 - 332489 + T 89 -12.1 -3.02109 | opp_overlap 332451 332449 332448 332444 332459 332463, overlap 332449 332453 332459 CTAAATAATTAAGTA TAGTAAAAGAAATTGAA CATAA TTCAACTTCTTTTACTA TATATATAAAATTTT TERM 332 332453 - 332487 + T 83 -10.3 -3.05765 | opp_overlap 332451 332449 332448 332444 332459 332463, overlap 332451 332449 332459 AAATAATTAAGTATA GTAAAAGAAATTGAA CATAA TTCAACTTCTTTTAC TATATATATAAAATT TERM 333 332481 - 332459 - T 74 -6.4 -4.39287 | opp_overlap 332453 332451 332449 332459, overlap 332451 332449 332448 332444 332463 TTAAGTATAGTAAAA GAAATTGAAC ATA ATTCAACTTC TTTTACTATATATAT nudH 332992 - 332504 - | dinucleoside polyphosphate hydrolase RMA_0328 334384 - 333014 - | response regulator PleD efp 334460 - 335026 + | elongation factor P TERM 334 335397 - 335387 - g 84 -4 -5.63504 | AATGCTACAAAAAAA TTCT GTA AGAA ATGAAGAATTTTGTA suhB 335292 - 336038 + | extragenic suppressor protein suhB RMA_0331 336098 - 336433 + | hypothetical protein psd 336440 - 337162 + | phosphatidylserine decarboxylase TERM 335 337863 - 337873 + G 71 -5.4 -4.56607 | ATTAATATATATTTG GCTA TTA TAGC TTTTCTACTTGCTAG pssA 337311 - 338078 + | CDP-diacylglycerol--serine O-phosphatidyltransferase emrA 338072 - 339139 + | multidrug resistance protein A RMA_0335 339464 - 339976 + | hypothetical protein RMA_0336 340323 - 340105 - | hypothetical protein bolA1 340547 - 340305 - | BolA-like protein RMA_0338 340602 - 341825 + | EAL domain-containing protein murC 342046 - 343503 + | UDP-N-acetylmuramate--L-alanine ligase murB 343513 - 344490 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 336 344553 - 344578 + F 93 -9.3 -4.81357 | opp_overlap 344553 GGGAATCCAGTAAAA CATATAAAAAA CAAG TTTTTTATATG TTTATTTTATAATAT TERM 337 344578 - 344553 - f 88 -9.3 -4.30978 | opp_overlap 344553 GGGAATCCAGTAAAA CATATAAAAAA CAAG TTTTTTATATG TTTATTTTATAATAT TERM 338 344595 - 344620 + F 80 -6.3 -4.87665 | opp_overlap 344598 TTATTTTATAATATG TAACTTCTATA TCAA TATTGAAGTTA TTTTTCTGGATCCCC TERM 339 344637 - 344662 + F 71 -5.3 -4.61231 | TTTTCTGGATCCCCG CCTACGCGGGG ATGA CATCGAGTAGG TTTTTCGAGCTATGC ddlB 344733 - 345698 + | D-alanine--D-alanine ligase TERM 340 345810 - 345788 - g 74 -3.5 -5.31456 | opp_overlap 345788 CTAATTTACAAAAAA GCAATATTA GGGCT TAAGATTGC TTTAATTATCTTTGT ftsQ 345692 - 346498 + | cell division protein ftsQ TERM 341 346812 - 346788 - g 79 -5.7 -5.13473 | opp_overlap 346787 346788 346788 ATCAGATTTAAAAAA TGCTGAAACTA GCA TTGTTTCGGCA ATTTACGCACTTGAA ftsA 346627 - 347862 + | cell division protein ftsA TERM 342 347937 - 347893 - T 71 -6.6 -4.13767 | gap 1, overlap 347894 347897 CGTTGGACCGGAAAA TGCATTTAGTGTCATTCCCGC TTTC GTGGGAATGACATAAAATG-A TCCACGCAACAATAC TERM 343 347937 - 347894 - T 70 -8.2 -3.08046 | overlap 347893 347897 GTTGGACCGGAAAAT GCATTTAGTGTCATTCCCGC TTTC GTGGGAATGACATAAAATGA TCCACGCAACAATAC TERM 344 347933 - 347897 - T 80 -10.4 -2.75577 | gap 1, overlap 347893 347894 GGACCGGAAAATGCA TTTAGTGTCATTCCCGC TTTC GTGGGAATGACA-TAAA ATGATCCACGCAACA RMA_0344 348484 - 348008 - | membrane protein implicated in regulation of membrane protease activity TERM 345 348404 - 348392 - G 71 -6.3 -4.16033 | CCCAAAGAATAAGAA TCCAA TAC TTGGA ACTGCAAAGAATTCA cycM 348995 - 348468 - | cytochrome c RMA_0346 349104 - 350180 + | hypothetical protein lpxC 351091 - 350189 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase RMA_0348 352587 - 351439 - | hypothetical protein TERM 346 354752 - 354739 - g 73 -3.9 -5.06414 | opp_overlap 354739 GCTGTTGAAGAAAAA TAACA ATAA TGTTA ATTCTGTTAAGCCGG rne 353015 - 355087 + | ribonuclease E TERM 347 355109 - 355126 + F 81 -9.9 -3.11687 | opp_overlap 355104 GGCTATAATATGTCA TTCCTGC GAAA GCAGGAA TTCAGTAATCCTTAA TERM 348 355209 - 355181 - f 100 -12.1 -4.52873 | opp_overlap 355187, overlap 355187 GGTCCATAAAAATAA TAAAAATACTAAT ATT ATTAGTATTTTTA GCTGGATCCCGCGAT TERM 349 355203 - 355187 - f 93 -6.7 -5.51353 | opp_overlap 355187, overlap 355181 TAAAAATAATAAAAA TACTAAT ATT ATTAGTA TTTTTAGCTGGATCC TERM 350 355187 - 355203 + F 79 -6.7 -4.67353 | opp_overlap 355187 355181 TAAAAATAATAAAAA TACTAAT ATT ATTAGTA TTTTTAGCTGGATCC TERM 351 355456 - 355466 + G 73 -8.2 -3.65832 | overlap 355455 355464 ATAGTTGAGTGGCGT CCGG TCA CCGG TATTTTGCCGCCTTT coxW 355330 - 356349 + | cytochrome c oxidase assembly protein rluA1 356353 - 357273 + | ribosomal large subunit pseudouridine synthase TERM 352 357997 - 358021 + G 84 -3.6 -5.67063 | opp_overlap 357999, overlap 358001 TATGATTATAGAAAA GGTGGCTAAA AAAGA TTTAGCTAAC TTTTTTTATGATGAA pbpE 357380 - 358609 + | penicillin-binding protein 4* TERM 353 359537 - 359575 + G 100 -15.3 -3.03619 | opp_overlap 359541, overlap 359540 GTGACTTTTAATTTA CAGATGTCACCCCGTGG CTTGA CCACGGGGTGACAATAG TCTTAAGGAGTAATT TERM 354 359540 - 359572 + G 100 -17.8 -2.74192 | opp_overlap 359541, overlap 359537 ACTTTTAATTTACAG ATGTCACCCCGTGG CTTGA CCACGGGGTGACAA TAGTCTTAAGGAGTA TERM 355 359571 - 359541 - g 100 -22 -2.94912 | opp_overlap 359540 359537 CTTTTAATTTACAGA TGTCACCCCGTGGC TTG ACCACGGGGTGACA ATAGTCTTAAGGAGT xth1 358691 - 359569 + | exodeoxyribonuclease III pdhA 359592 - 360572 + | pyruvate dehydrogenase e1 component, alpha subunit precursor TERM 356 360643 - 360670 + F 72 -9.2 -2.73875 | gap 1, opp_overlap 360610 360643, overlap 360640 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGATGTTCACGCAGG TERM 357 360670 - 360643 - f 73 -9.2 -2.80113 | gap 1, opp_overlap 360640 360643, overlap 360610 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGATGTTCACGCAGG TERM 358 361498 - 361487 - g 77 -3 -5.49729 | opp_overlap 361487 AATCAGTGAAAAAAA CTAA TCGT TTAG TTGTGGTGGAAGAAG TERM 359 361606 - 361625 + G 80 -9.3 -3.55205 | ATAGAGATTGTAAGC GGCAAGG ATCTTC CCTTGCC TTATGCTGTTAATTT pdhB 360733 - 361713 + | pyruvate dehydrogenase subunit beta typA 363680 - 361851 - | GTP-binding protein TypA TERM 360 364797 - 364773 - H 84 -10 -3.48276 | overlap 364775 CTGCCTGTGACACAA GATCCCGTGG TCAAG CCACGGGATG ACAATCCTAGTCGAC TERM 361 364795 - 364775 - H 90 -12.6 -3.31726 | overlap 364773 GCCTGTGACACAAGA TCCCGTGG TCAAG CCACGGGA TGACAATCCTAGTCG TERM 362 365202 - 365191 - g 73 -4.4 -4.90302 | overlap 365201 GATTAAGAAAACAAA GCTT GAAC AAGC CCACGCTGAGGCTAT hlpA 364838 - 365392 + | Outer membrane protein icd 365467 - 366918 + | isocitrate dehydrogenase RMA_0359 367024 - 367353 + | putative monovalent cation/H+ antiporter subunit G TERM 363 368005 - 368021 + G 73 -9.4 -2.87132 | TCTGATGATGTCATA CCGCGA CTTGA TCGCGG TATCTCAGGACACAG TERM 364 368073 - 368049 - g 81 -10 -3.50869 | overlap 368051 CAGCAGGCGATACAA GATCCCGTGG TCAAG CCACGGGATG ACAAATCCAATAATA TERM 365 368071 - 368051 - g 91 -12.6 -3.32698 | overlap 368049 GCAGGCGATACAAGA TCCCGTGG TCAAG CCACGGGA TGACAAATCCAATAA mnhB 367399 - 368490 + | putative monovalent cation/H+ antiporter subunit B ccmB 368477 - 369130 + | Heme exporter protein B RMA_0362 369207 - 369665 + | hypothetical protein TERM 366 369726 - 369713 - gf 74 -3.1 -5.29716 | overlap 369707 TGAAGATAATAAAAA CACAA CACG TCGTG ATTTTATGGTTCTAA petA 369687 - 370214 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit petB 370165 - 371418 + | cytochrome b TERM 367 371465 - 371502 + F 87 -5.5 -5.5208 | gap 1, opp_overlap 371470, overlap 371466 TTTGTTATTATTTCA TGAGATTGCCGTGCAGCC TAT GGCTGCTCG-CAATGACG TTTTTTGTATTATAC TERM 368 371497 - 371470 - f 81 -10.6 -2.80113 | gap 1, opp_overlap 371466 371465 TATTATTTCATGAGA TTGCCGTGCAGCC TAT GGCTGCTCG-CAA TGACGTTTTTTGTAT RMA_0365 371536 - 371817 + | endo/excinuclease amino terminal domain-containing protein fbcH 371889 - 372698 + | cytochrome c1, heme protein precursor RMA_0367 372989 - 373420 + | hypothetical protein hspC1 373441 - 373983 + | small heat shock protein TERM 369 373992 - 374006 + T 79 -7.2 -4.38116 | opp_overlap 373991 TGATTAATCAAGCAT TGCTAA ATA TTAGCA TTTAATTTTTCTGAA RMA_0369 374924 - 374250 - | hypothetical protein TERM 370 374907 - 374888 - G 82 -7.8 -4.49756 | opp_overlap 374887 GTTGAAATATGAAAA GGTCATGC CAAA GCTTGACC ATGATATCAAGAAAA TERM 371 375183 - 375200 + r 74 -5.5 -4.88407 | GTTTACCGGCATATT CCGGC TTAAACTT GCCGG TTTTTAATTCAATAA TERM 372 375651 - 375673 + r 81 -10.7 -2.89822 | ACGACTCCATGGGAT TTCTCCAAC CGCCT GTTGGAGAA TGTGGTCATTATTAT TERM 373 375850 - 375870 + r 81 -9.9 -3.10164 | opp_overlap 375854, overlap 375854 CCTATATTCTTCCAA TAAAGAACT ATC AGTTCTTTA TTCACTGCTAAATGG TERM 374 375866 - 375854 - R 70 -6.3 -4.1552 | opp_overlap 375850 375854 TATTCTTCCAATAAA GAACT ATC AGTTC TTTATTCACTGCTAA TERM 375 375854 - 375866 + r 70 -6.3 -4.21974 | opp_overlap 375854, overlap 375850 TATTCTTCCAATAAA GAACT ATC AGTTC TTTATTCACTGCTAA prfB 376991 - 375978 - | peptide chain release factor 2 TERM 376 377142 - 377162 + H 77 -9 -3.32946 | overlap 377140 CGTGGTTTAGTGTCA TCCTGCGA CTTGA TCGCGGGA TCTTGTAATTACAGA TERM 377 379011 - 379021 + G 71 -6.8 -4.19371 | overlap 379017 GTAATATCGAAATTC CGCA ATC TGCG TTTATTGCAGCTTTA lepA 377240 - 379054 + | GTP-binding protein LepA TERM 378 381904 - 381889 - f 78 -6.8 -4.35742 | opp_overlap 381889 ACTCAACTATCAAAA CCGACA GTAC CGTCGG TTGAGTGAGATTCAT TERM 379 382540 - 382566 + F 72 -3.6 -5.30155 | overlap 382542 ATAAATCCATTTTAC TACCGGGTGTAA TCA TTACCACCGGAA TTTTTTGCTTGATCA RMA_0377 383223 - 383516 + | hypothetical protein TERM 380 384132 - 384122 - f 74 -3.2 -5.45802 | TGGGGAAAAGAAAAA CCGT GGC ACGA CAAATTTGATTATGT TERM 381 386520 - 386500 - f 82 -7.7 -4.7153 | overlap 386491 AAATAAGGTTAAAAA CCAGTAATT TTA AATTACTAG ATGCCGGGGCAAATA TERM 382 386597 - 386583 - g 72 -5 -4.79955 | ATAGCCACAATAAAA CACTAA AAG CTAGTG GAACAATACAAAAAG RMA_0382 386546 - 386869 + | hypothetical protein rodA 390149 - 389031 - | rod shape-determining protein rodA TERM 383 390209 - 390197 - R 70 -6.3 -4.28656 | opp_overlap 390197 ATCCAATACTTAAAA GCTTT ATA AAAGC TTTATTGAAATTTTA TERM 384 390197 - 390209 + r 70 -6.3 -4.24711 | opp_overlap 390197 ATCCAATACTTAAAA GCTTT ATA AAAGC TTTATTGAAATTTTA ptrB 392548 - 390350 - | protease II TERM 385 391068 - 391084 + g 70 -2.3 -5.24129 | AAAGGATTTGAACCG TCTTTTT TAA ATAAAGA TTTTTTATAAAACAA TERM 386 391581 - 391599 + g 88 -7.6 -5.18371 | opp_overlap 391583 AAATAATCGCCATTA TATTCTAT TTC ATAGAATA TTTTGTTTTCTGCAG TERM 387 391904 - 391922 + g 78 -7.4 -4.11484 | opp_overlap 391918, overlap 391905 TACAGCTAAATCTCG ATCGCTTG ATA CAAGCGAA TTTTGCGGCATTCGC TERM 388 391905 - 391921 + g 83 -10.9 -3.06569 | opp_overlap 391918, overlap 391904 ACAGCTAAATCTCGA TCGCTTG ATA CAAGCGA ATTTTGCGGCATTCG TERM 389 392641 - 392628 - R 95 -5.3 -6.04419 | opp_overlap 392628 392632 AAAATAATAAAAAAA TTCTG TAAT CAGAA TTGTTTACTGGATTG nuoL3 394268 - 392724 - | putative monovalent cation/H+ antiporter subunit D vapC1 394626 - 394264 - | toxin of toxin-antitoxin (TA) system VapC vapB1 394980 - 394678 - | antitoxin of toxin-antitoxin (TA) system VapB TERM 390 395043 - 395060 + r 71 -6.9 -4.0098 | TACTATTTATTGTAC GCTGTGC AGGC GCACTGC TTATTTGACTTCCAA nuoL2 396658 - 395135 - | putative monovalent cation/H+ antiporter subunit D TERM 391 395936 - 395914 - G 71 -5.6 -4.63184 | AATGCACCGGAAAAA TTGCAGTTTT AGC AATACCGCAA ATAAACATTAACAAT nuoN2 398043 - 396742 - | putative monovalent cation/H+ antiporter subunit D TERM 392 397060 - 397086 + g 81 -9.6 -3.40597 | overlap 397058 TATTATACCGTTTTC GGTTACGTAT AATAAAA ATACGTAACC TATTTGAGTGAAACA mnhC 398381 - 398040 - | putative monovalent cation/H+ antiporter subunit C virB9-1 399243 - 398473 - | VirB9 virB8-1 399952 - 399227 - | VirB8 TERM 393 399968 - 399990 + H 79 -7.2 -4.41302 | opp_overlap 399977, overlap 399969 TCTGTTTTAACTCTA TCATAATTAT AAT ATGATTATGA TTTGTTAATTTAATG TERM 394 400289 - 400304 + H 75 -4.8 -5.0133 | TTTTTAATATTTTTT TCTATT TATA AATAGA TTTTTTCAAAAAATG RMA_0397 400381 - 400569 + | hypothetical protein virB8-2 400622 - 401353 + | VirB8 virB9-2 401340 - 401813 + | VirB9 virB10 401997 - 403439 + | VirB10 virB11 403397 - 404440 + | hypothetical protein TERM 395 404506 - 404480 - f 82 -11 -2.53677 | opp_overlap 404483, overlap 404479 404483 AAGTAATTGACGAAG CAATCTCAGG CCACAAT CCTGAGATTG TCACGCTCCTTTTAG virD4 404607 - 406382 + | hypothetical protein TERM 396 406864 - 406876 + G 74 -6.3 -4.33274 | opp_overlap 406862 406864 TTGGTACAAAAATTA TTGCT AGT AGCAA TTTTAGTGATGTCGG gppA 406392 - 407804 + | guanosine pentaphosphate phosphohydrolase RMA_0404 408861 - 408046 - | hypothetical protein TERM 397 409595 - 409605 + H 72 -2.6 -5.5074 | CGTCATATTTTTTAG TTTT TAT AAAA TTTTTTATTAGCTTA TERM 398 410756 - 410746 - H 71 -5.4 -4.64591 | GAATGACATAGAAAA TCAC AGG GTGA CATGCTGACTTTAAA RMA_0407 410787 - 411671 + | hypothetical protein RMA_0408 411628 - 412479 + | hypothetical protein cysQ 412476 - 413258 + | 3'(2'),5'-bisphosphate nucleotidase TERM 399 413266 - 413293 + T 73 -9.2 -2.80113 | gap 1, overlap 413290 GATACTAGATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA mutS 416073 - 413398 - | DNA mismatch repair protein TERM 400 413492 - 413504 + g 70 -4.1 -4.72029 | TTTTCATCTAATTTG CTGCT TAT AGTAG TTTTATTAGGTTCAA TERM 401 414401 - 414411 + g 77 -5.4 -4.88388 | opp_overlap 414410, overlap 414410 TGGCTACAAATATCC GCAT ATA ATGC TTTTTCTAAGCTTAT TERM 402 414975 - 414989 + g 91 -2.9 -5.9663 | TATCACTAGTTTTTT TTAGA AGTTC TCTAA TTTTTTTTACTATTT TERM 403 415350 - 415373 + g 73 -4 -5.1361 | TTCCTTTAATATCTT TCATTTTATA AAAA TCTAAAATGA TTTTTTCGCATTTAT TERM 404 415417 - 415403 - G 93 -7.2 -5.47399 | TTAATCGCAAAAAAA CTATCA ACT TGATAG GTAATACGAAAATTT lacA 416693 - 416244 - | ribose-5-phosphate isomerase B nlpD1 416730 - 417404 + | membrane-bound metallopeptidase thyX 418295 - 419188 + | FAD-dependent thymidylate synthase TERM 405 419220 - 419193 - f 100 -15 -2.52464 | overlap 419178 TTTTTGGGTAATGTA TGTCATTCCCGC TTTC GCAGGAATGACA TACAACAACTATAAC TERM 406 419744 - 419726 - g 76 -4.5 -5.19261 | opp_overlap 419729, overlap 419729 AAATTTATGAAAAAA TTACCGG TGATG CCGGTTA TTTTGACACTAAAAT TERM 407 419729 - 419741 + G 75 -6.9 -4.18506 | opp_overlap 419729 419726 TTTATGAAAAAATTA CCGGT GAT GCCGG TTATTTTGACACTAA TERM 408 420511 - 420501 - g 70 -4 -5.00884 | AGCTCCGGGAAAAAA CAAA ATT TTTG CAATTGATCTAACAG tolB 419263 - 420597 + | translocation protein TolB TERM 409 420669 - 420705 + T 100 -14.1 -4.66609 | opp_overlap 420679, overlap 420679 CTTGATCGCGGTATC CAGTTAAAAATACTAAC ATT GTTAGTATTTTTAGTTG TTTTTGGATCCCGTG TERM 410 420695 - 420679 - T 85 -8.1 -4.67353 | opp_overlap 420669 420679 GTATCCAGTTAAAAA TACTAAC ATT GTTAGTA TTTTTAGTTGTTTTT TERM 411 420679 - 420695 + T 91 -8.1 -5.10004 | opp_overlap 420679, overlap 420669 GTATCCAGTTAAAAA TACTAAC ATT GTTAGTA TTTTTAGTTGTTTTT rpoH 421684 - 420752 - | RNA polymerase factor sigma-32 cox11 421719 - 422288 + | cytochrome C oxidase assembly protein RMA_0419 423388 - 422504 - | hypothetical protein trmU 423627 - 424751 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 412 425961 - 425971 + G 74 -5.4 -4.77165 | CTTCTTTAGCCGCTA TCCT TGG AGGA TTTTGTTCTACGGAA atrC1 424877 - 426277 + | cationic amino acid transporter-1 TERM 413 426360 - 426314 - f 83 -11 -2.95388 | opp_overlap 426354 GAGCGAACGTAGAGA GCGTGGCAATCTCATGAAGT AGTACAA AATTCCTGAGATTGCCACGT CGAGGCTTTGCCTCT hisS 426346 - 427671 + | histidyl-tRNA synthetase TERM 414 427875 - 427889 + T 91 -4.3 -5.97979 | opp_overlap 427875, overlap 427868 CAATCCAGTAAAAAA TTCTG ATTGA CAGAA TTTTTTTATTATTGT TERM 415 427889 - 427875 - T 77 -4.3 -5.18357 | opp_overlap 427868 427875 CAATCCAGTAAAAAA TTCTG ATTGA CAGAA TTTTTTTATTATTGT TERM 416 427903 - 427929 + T 70 -8 -3.04144 | AATTTTTTTATTATT GTTTTGGACTGC CAC GCAGTCTACGAC TGTTCGCAATGACGG TERM 417 428839 - 428866 + T 73 -9.2 -2.80443 | gap 1, opp_overlap 428833, overlap 428859 428863 ATATAGATATCGTCA TTGCGA-GCAGCC ATA GGCTGCGTAGCAA TCTCGTCCAATATCC TERM 418 430970 - 430984 + T 74 -5.8 -4.65838 | overlap 430974 TTTTATCTACACCGT GAATTT GAA AAATTC TTTTTGCAATATCTA RMA_0429 431510 - 431061 - | hypothetical protein TERM 419 433048 - 433023 - H 89 -12.1 -3.14564 | opp_overlap 433029 TGATTGTTGTATTAA TAGATAGCTAT TACA ATAGCTATCTA CAGAACCTAGAAATT TERM 420 433458 - 433471 + H 79 -2.5 -5.81032 | TAAATAACTCTTTAT TAAAA TGTT TTTTA TTTTTTTTGAGCTTG TERM 421 433666 - 433653 - H 74 -5.3 -4.80882 | ATTTTATATGAAAAA TTGAC GTAA GTCAA GAGATATTAAATTAA TERM 422 433726 - 433762 + H 100 -12.7 -5.11613 | opp_overlap 433736 TTTATTCACAGAATC CAGTTAAAAATACTAAT AAT ATTAGTATTTTTAGTTG TTTTTTGGATACTGT TERM 423 433752 - 433736 - H 79 -6.7 -4.68424 | opp_overlap 433726 GAATCCAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTAGTTGTTTTT tolQ 433910 - 434644 + | hypothetical protein tolR 434644 - 435075 + | hypothetical protein RMA_0434 435053 - 436039 + | periplasmic protein TonB spoT2 437045 - 437752 + | guanosine polyphosphate pyrophosphohydrolase/synthetase proP2 439034 - 437703 - | proline/betaine transporter RMA_0437 440706 - 439168 - | HlyD family secretion protein aprD 442669 - 440888 - | alkaline protease secretion ATP-binding protein AprD asd 443675 - 442656 - | aspartate-semialdehyde dehydrogenase pkcI 444063 - 443665 - | protein kinase C inhibitor 1 TERM 424 444111 - 444141 + r 79 -3.5 -5.66684 | gap 1, opp_overlap 444115 444119, overlap 444115 444119 TGACGAAGCAATCCA GTAA-GAAATGCTA ATTT TAGCATTTCTTTAA TTTTTTTCTGGATTG TERM 425 444136 - 444115 - R 83 -10.3 -3.23598 | opp_overlap 444115 444111 444119, overlap 444119 GAAGCAATCCAGTAA GAAATGCTA ATTT TAGCATTTC TTTAATTTTTTTCTG TERM 426 444115 - 444136 + r 95 -10.3 -4.55485 | opp_overlap 444115 444119, overlap 444111 444119 GAAGCAATCCAGTAA GAAATGCTA ATTT TAGCATTTC TTTAATTTTTTTCTG TERM 427 444119 - 444132 + r 71 -5.3 -4.73341 | opp_overlap 444119 444115, overlap 444115 444111 CAATCCAGTAAGAAA TGCTA ATTT TAGCA TTTCTTTAATTTTTT RMA_0441 444576 - 444196 - | hypothetical protein hslV 444803 - 445375 + | ATP-dependent protease peptidase subunit TERM 428 445414 - 445402 - g 80 -4.7 -5.28778 | opp_overlap 445410 ACTACTTATAAAAAA GACCC TAT GGGGC TTACCCCTTCTCAAA hslU 445372 - 446724 + | ATP-dependent protease ATP-binding subunit TERM 429 446859 - 446832 - f 73 -9.2 -2.80113 | gap 1, opp_overlap 446827, overlap 446802 TATTATTTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGATTTAGTAGT TERM 430 449009 - 448990 - f 84 -10 -3.55563 | overlap 448991 AGCTGATGGTTCAAA CCTCCACC TTCA GGTGGAGA AACTTTAGTTTGAAT TERM 431 449008 - 448991 - f 86 -11.3 -2.73124 | overlap 448990 GCTGATGGTTCAAAC CTCCACC TTCA GGTGGAG AAACTTTAGTTTGAA RMA_0449 449075 - 449518 + | transposase TERM 432 449538 - 449552 + F 79 -10 -2.79183 | TAGCTTAAACTCTAC GGCACT TCT AGTGCC TATCATCAACCTACC TERM 433 449557 - 449591 + F 70 -7.3 -3.6018 | gap 2, opp_overlap 449562 449563, overlap 449559 449563 CTTCTAGTGCCTATC ATCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGAG TTATATAATGTATTG TERM 434 449559 - 449586 + F 77 -9.2 -3.27164 | gap 1, opp_overlap 449562 449563, overlap 449557 449563 TCTAGTGCCTATCAT CAACCTACCGGCT CTC AGCCGGTAG-TGG TTGAGTTATATAATG TERM 435 449584 - 449562 - f 89 -12 -3.21218 | opp_overlap 449559 449557 449563, overlap 449563 AGTGCCTATCATCAA CCTACCGGCT CTC AGCCGGTAGT GGTTGAGTTATATAA TERM 436 449563 - 449583 + F 100 -15.5 -2.81225 | opp_overlap 449562 449563, overlap 449559 449557 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATATA TERM 437 449583 - 449563 - f 100 -15.5 -2.52516 | opp_overlap 449563 449559 449557, overlap 449562 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATATA TERM 438 450966 - 450989 + G 79 -4 -5.55769 | ACTCCTATGATTGTG GCTTATAA AGTTAATC TTATAAGC TTTTTTATTATCAGG lpxB 450072 - 451412 + | lipid-A-disaccharide synthase RMA_0453 451684 - 451409 - | hypothetical protein TERM 439 451493 - 451482 - G 89 -3 -5.94214 | opp_overlap 451475 451482, overlap 451474 451469 AATATAATAAAAAAA TATG TTTC CATA TTTTTTCTTATAGTA TERM 440 451482 - 451493 + g 77 -3 -5.58179 | opp_overlap 451482 451474 451469, overlap 451475 AATATAATAAAAAAA TATG TTTC CATA TTTTTTCTTATAGTA TERM 441 451739 - 451756 + H 78 -2.1 -5.73978 | AGTAGTAATATGAAC TATGAAT AAAG ATTTATA TTTTTTGTTTGTAAT TERM 442 451858 - 451893 + H 73 -8 -3.5013 | overlap 451853 TGCTCATTAGTCATC TAGTTTTAATATTT TAATTACC AAATATTAAAACTA TTGATTGATTTAGCA RMA_0454 452008 - 453060 + | aminodeoxychorismate lyase cyaY 453176 - 453514 + | frataxin-like protein RMA_0456 453652 - 454323 + | hypothetical protein TERM 443 454503 - 454477 - f 93 -9.7 -4.73105 | opp_overlap 454483, overlap 454483 ATCCATAAAAAATAA TAAAAATTCTG TAAAT CAGAATTTTTA ACTAGATTCAATTAC TERM 444 454497 - 454483 - f 83 -4.3 -5.54403 | opp_overlap 454483, overlap 454477 AAAAAATAATAAAAA TTCTG TAAAT CAGAA TTTTTAACTAGATTC RMA_0457 454611 - 455288 + | hypothetical protein TERM 445 455340 - 455307 - f 70 -4 -5.05113 | opp_overlap 455307 CTTATATAAATAAAA TTATCAAGGAACAA AGAACA TTTTTCCATGATAA TGATTTTCCTTATTA TERM 446 455858 - 455839 - f 84 -10 -3.55563 | overlap 455840 AGCTGATGGTTCAAA CCTCCACC TTCA GGTGGAGA AACTTTAGTTTGAAT TERM 447 455857 - 455840 - f 86 -11.3 -2.73124 | overlap 455839 GCTGATGGTTCAAAC CTCCACC TTCA GGTGGAG AAACTTTAGTTTGAA RMA_0459 455924 - 456367 + | transposase TERM 448 456387 - 456401 + F 79 -10 -2.79183 | TAGCTTAAACTCTAC GGCACT TCT AGTGCC TATCATCAACCTACC TERM 449 456406 - 456440 + F 72 -7.3 -3.91716 | gap 2, opp_overlap 456411 456412, overlap 456407 456408 456412 CTTCTAGTGCCTATC ATCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGAG TTATTTAAAACCTCA TERM 450 456407 - 456439 + F 83 -10.8 -2.94708 | gap 2, opp_overlap 456411 456412, overlap 456406 456408 456412 TTCTAGTGCCTATCA TCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGA GTTATTTAAAACCTC TERM 451 456408 - 456435 + F 77 -9.2 -3.33509 | gap 1, opp_overlap 456411 456412, overlap 456407 456406 456412 TCTAGTGCCTATCAT CAACCTACCGGCT CTC AGCCGGTAG-TGG TTGAGTTATTTAAAA TERM 452 456433 - 456411 - f 89 -12 -3.21218 | opp_overlap 456408 456407 456406 456412, overlap 456412 AGTGCCTATCATCAA CCTACCGGCT CTC AGCCGGTAGT GGTTGAGTTATTTAA TERM 453 456432 - 456412 - f 100 -15.5 -2.52516 | opp_overlap 456408 456407 456406 456412, overlap 456411 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATTTA TERM 454 456412 - 456432 + F 100 -15.5 -2.8304 | opp_overlap 456412 456411, overlap 456408 456407 456406 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATTTA RMA_0461 457153 - 457536 + | hypothetical protein TERM 455 457570 - 457626 + T 100 -15.4 -2.72855 | gap 1, overlap 457573 CGTCATTGTGAGGAG TTGCATGGCT-TCTATGTCATTCCCGC TTTC GCGGGAATGACATAGAGAATCACGCAC TAGTTAAACGCTTTA gltX1 458962 - 457619 - | glutamyl-tRNA synthetase TERM 456 458986 - 459010 + r 86 -10 -3.66288 | overlap 458988 AATTTTATTAATTGT CATCCCGTGG CTTGA CCACGGGATC TTGTATTACAGCCTG TERM 457 458988 - 459008 + r 91 -12.6 -3.41024 | overlap 458986 TTTTATTAATTGTCA TCCCGTGG CTTGA CCACGGGA TCTTGTATTACAGCC topA 461401 - 459071 - | DNA topoisomerase I TERM 458 459381 - 459394 + g 73 -3.7 -5.08169 | opp_overlap 459381 CCAAGTTGAATATAA GGTCC GTAA GGTCC TTTTTTCAGATATAT TERM 459 460343 - 460364 + g 70 -2.3 -5.38497 | gap 1, overlap 460344 460353 ATTTGTGGGTCTTAT TGCTTCATGA GCT TCTTGA-GCA TTTTTTACTTTGGAT tdpX1 463303 - 462695 - | thioredoxin peroxidase 1 hflC1 464317 - 463379 - | membrane protease subunit stomatin/prohibitin-like protein RMA_0470 466255 - 464687 - | putative membrane-associated metal-dependent hydrolase TERM 460 465194 - 465216 + g 95 -8.6 -5.19212 | CTCTGAGTTTGTTAT TATTGCTTTT ATA AAAGGCAATA TTTTTTCATCATGAT RMA_0471 466258 - 466755 + | Holliday junction resolvase-like protein TERM 461 466834 - 466863 + F 71 -7.5 -3.47063 | gap 1, overlap 466843 466860 AGCGAGGATCCAGAC TAAAAAATCTTTCA TTT TGA-AGATTTTTTA TTATAAAGTTTTTTT TERM 462 466881 - 466906 + F 74 -7.7 -3.794 | opp_overlap 466886 ATAAAGTTTTTTTAA GTAAAGCTTTT AAAA AAAAGCTGTAC TTTACTGGATTCCCG RMA_0472 466911 - 467273 + | plasmid maintenance system antidote protein RMA_0473 467359 - 468225 + | dTDP-4-dehydrorhamnose reductase capD 468420 - 469448 + | putative nucleoside-diphosphate sugar epimerase CapD rffE 469441 - 470574 + | UDP-N-acetylglucosamine 2-epimerase TERM 463 470632 - 470648 + GF 79 -3.7 -5.55664 | opp_overlap 470632 ATTAATAAAACTTAA CACTTTA TTT TTAAGTG TTTTTTTACTAATAA TERM 464 471314 - 471278 - gf 100 -8.7 -5.37171 | opp_overlap 471277 471291 471303, overlap 471283 AATATTAAAGAAAAA CCAAACTCGGAAACCAT TTT ATGGCTTCCTAGATGGG AATTATCATTTAAAA TERM 465 471309 - 471283 - gf 100 -10.2 -4.46652 | opp_overlap 471277 471291 471303, overlap 471278 TAAAGAAAAACCAAA CTCGGAAACCAT TTT ATGGCTTCCTAG ATGGGAATTATCATT RMA_0476 470534 - 471880 + | hypothetical protein RMA_0477 471896 - 472279 + | hypothetical protein TERM 466 472649 - 472635 - f 72 -7.2 -3.9318 | overlap 472633 AAATTCTTAAAAATA CACTAA TTA TTAGTG AGGAAGAAAATCTAT RMA_0478 472695 - 474545 + | glycosyltransferase RMA_0479 475548 - 474550 - | RND family efflux transporter MFP subunit TERM 467 475455 - 475466 + g 82 -3 -5.66229 | GTACTTTAGTTGCTT TTAC TCCT GTAA TTTTTTCTTCTTCCT RMA_0480 476437 - 475637 - | hypothetical protein RMA_0481 477208 - 476441 - | putative hydrolase/acyltransferase RMA_0482 477241 - 478413 + | glycosyltransferase TERM 468 478544 - 478497 - T 75 -8.2 -3.62046 | gap 1, opp_overlap 478497 CTATTCTCCTAATAA TTTTAT-TTCAGCATACAAATCT TCA AGATTTATATACTGATCATAAAA ATTATTATAGTCATG RMA_0483 479530 - 478937 - | ATPase components of ABC transporters TERM 469 480643 - 480627 - R 70 -3.8 -5.00412 | opp_overlap 480627, overlap 480617 AAAGACAACTAAAAA TACTAA TAATG TTAGTA TTTTAAACTGGGTCT TERM 470 480785 - 480749 - R 100 -10.5 -4.85599 | opp_overlap 480760, overlap 480760 GGCACTCCATAAAAA TAATAAAAAAATGCTAA AAA TTAGCATTTTTTTACTT CCTTGCTTCGTCAAA TERM 471 480760 - 480774 + r 100 -7.2 -5.66868 | opp_overlap 480760 480749 AAAATAATAAAAAAA TGCTAA AAA TTAGCA TTTTTTTACTTCCTT TERM 472 480774 - 480760 - R 100 -7.2 -6.04419 | opp_overlap 480760, overlap 480749 AAAATAATAAAAAAA TGCTAA AAA TTAGCA TTTTTTTACTTCCTT rpsD 481647 - 480964 - | 30S ribosomal protein S4 cyoB 481690 - 482616 + | protoheme IX farnesyltransferase TERM 473 482604 - 482628 + F 74 -8.7 -3.29386 | AACTAACACTATATC CACTATTAGCT GAG AGATAATAGTG TTGGGTTACTTTTAT RMA_0487 483780 - 484163 + | hypothetical protein TERM 474 484587 - 484599 + T 72 -3.4 -5.18357 | opp_overlap 484576 484587 CCAAGTAAAAGCATA CTCT CACGA AGAG TTTTTTAATAAATTA TERM 475 484694 - 484684 - T 81 -4 -5.67283 | AATCCAAATAAAAAA TCAT TAT ATGA AGACCTTATTATTTT asmA 487536 - 485011 - | Outer membrane assembly protein TERM 476 487067 - 487094 + g 74 -6.4 -4.32131 | gap 1 AGTGCTAATTCAGTT TTAGTCTCGGTAG ATT CTACAGAG-CTAA TTTCATTTGTTTTGG rimM 488355 - 487858 - | 16S rRNA-processing protein RMA_0490 488370 - 491048 + | hypothetical protein xseB 491062 - 491304 + | exodeoxyribonuclease VII small subunit TERM 477 492522 - 492535 + T 78 -6.7 -4.46112 | AATTTTTGTCTGTAT GCTTG GCAC CAAGC TTTATTTACATAAGA mpg 493225 - 492662 - | 3-methyladenine DNA glycosylase RMA_0498 493745 - 493497 - | hypothetical protein nuoE 494241 - 493738 - | NADH dehydrogenase subunit E TERM 478 494136 - 494150 + g 70 -4.3 -4.66609 | CTAGATCAAGCAGCG GAAGT ATTGC ACTTC TTTTTCCATGCGGTG TERM 479 494259 - 494301 + r 85 -10.9 -3.2128 | gap 1, overlap 494254 ATTTTTAGTACGGTA TAGTTTTATGTCATTCCTGC GAAA GCAGGAATC-CATAGAACTA TTCAATTAAATCTTT nuoD 495929 - 494661 - | NADH dehydrogenase subunit D TERM 480 495865 - 495882 + g 71 -5.5 -4.6155 | CTGTCACCTAGTTCG CTTGACC ACGG GGTCCAG TCTTTTTTATTTTTT nuoC 496663 - 495935 - | NADH dehydrogenase subunit C nuoB 497165 - 496641 - | NADH dehydrogenase subunit B nuoA 497703 - 497170 - | NADH dehydrogenase subunit A TERM 481 497652 - 497625 - G 73 -9.2 -2.80443 | gap 1, opp_overlap 497620 GGATATTTGATGAGA TTGCCACGCAGCC TAC GGCTGC-TTGCAA TGACGTAGGTTTAAT rfaL 498938 - 497700 - | putative lipid A core - O-antigen ligase RMA_0506 499427 - 498939 - | hypothetical protein TERM 482 499542 - 499512 - H 82 -11.2 -2.73681 | opp_overlap 499514 GAGCGACTTCAAGGA GCGCGTGGCAAT GCCTGAG ATTGCCACGCTC CTTGAAGTCGCTCGC TERM 483 499514 - 499540 + H 89 -12.4 -2.73681 | opp_overlap 499512 GCGACTTCAAGGAGC GCGTGGCAAT GCCTGAG ATTGCCACGC TCCTTGAAGTCGCTC xerD 501218 - 502138 + | site-specific tyrosine recombinase XerD TERM 484 502484 - 502460 - g 70 -2.2 -5.34555 | gap 1, opp_overlap 502460 GTAGATGATAAAAAA TCTTTTCTAGC AGAT GC-AGAAGAGA TAATATCTAACAATA RMA_0510 502214 - 503230 + | hypothetical protein TERM 485 503392 - 503381 - g 79 -4.4 -5.29208 | AAAATAAAAAAGAAA CAGT GAAT ACTG AAACAAAAAATTTAG TERM 486 504154 - 504137 - g 76 -2.7 -5.4182 | overlap 504151 504152 AAGGAGAAATAAAAA GGCATTT ATCT AAATCCC TAGAAGGAGCTTCTG TERM 487 504375 - 504342 - g 75 -4.7 -5.00138 | overlap 504335 TAGTGAAATGAAAAA TTCTCATACTCCTTT AAAG ATAGAAGTACAAGAA CAGTTAGAACAAATC RMA_0511 503341 - 504519 + | hypothetical protein TERM 488 504580 - 504596 + T 100 -6.7 -5.80727 | opp_overlap 504580 TCACGGGATCTAAAA TACTAAT ATT ATTAGTA TTTTTTATTGTTTTT TERM 489 504596 - 504580 - T 74 -6.7 -4.1899 | opp_overlap 504580 TCACGGGATCTAAAA TACTAAT ATT ATTAGTA TTTTTTATTGTTTTT fabI 505490 - 504708 - | enoyl-(acyl carrier protein) reductase TERM 490 505331 - 505346 + g 95 -9 -4.94902 | AACCTATTTCCTCAG CGAGTG GTTT CACTCG TTTTTCTAGTACTTC cutE 505560 - 507083 + | apolipoprotein N-acyltransferase TERM 491 507462 - 507447 - f 72 -4.8 -4.89477 | overlap 507454 CTCCTAATAATAAAA TTGAAT ATCT ATTCAA AGAAATAGAAAGTGA ampD1 507756 - 508577 + | negative regulator of beta-lactamase expression TERM 492 508733 - 508748 + T 72 -4.8 -4.788 | opp_overlap 508733 508736, overlap 508726 508726 GGATTCAGTTTAAAA TACTAA AAAT TTAGTA TTTTTAAATTACTTT TERM 493 509221 - 509231 + T 82 -2.6 -5.95449 | opp_overlap 509221 TGTTTATCTCTAATA TTTT TCA AAAA TTTTTTCTTTTCTTT TERM 494 511594 - 511578 - T 85 -10.9 -3.29558 | overlap 511576 GCATAATTTAGAAGA TGCCGTA AAT TACGGCA AAAGGCTTATAGTCT TERM 495 512305 - 512295 - T 75 -2.4 -5.5762 | AGCAAATAGAAAAAA GGTG TAC CGCC ATAATTGTCTACTGT TERM 496 512700 - 512716 + T 74 -6.7 -4.32607 | opp_overlap 512700 ATTTCTGCAAGCTAA TAGTTAA TTT TTAACTA TTTATTAGATTTTGA dsbB 513256 - 512714 - | disulfide bond formation protein DsbB TERM 497 513273 - 513315 + H 72 -8.6 -3.13343 | gap 1, overlap 513276 ACGAGCGACTACCAG GAG-CGTGGCAATCTCA GGAAGTTTGA TGAGATTGCCACGTCGC TTCGCTCCTTGCAAT TERM 498 513276 - 513311 + H 100 -13.5 -2.5602 | overlap 513273 AGCGACTACCAGGAG CGTGGCAATCTCA GGAAGTTTGA TGAGATTGCCACG TCGCTTCGCTCCTTG lysS 513413 - 514981 + | lysyl-tRNA synthetase RMA_0526 515111 - 516043 + | putative permease TERM 499 516081 - 516108 + F 81 -10 -3.14211 | opp_overlap 516076 516074, overlap 516085 ACTGAAAGGAGCGTG GCAATCTCAG TAAGTTGC CTGAGATTGC TTCGTCGACGCCCAT TERM 500 516650 - 516638 - g 74 -3.5 -5.25699 | ATTATAGAAGAAAAA TTAAA ATC TTTAA TGGATATACCGGTCT TERM 501 516704 - 516687 - g 74 -9.1 -3.10894 | ACGATCAGCATGGAA CGGCGAT TATT ACCGCCG CAGGGCTAATAAATG TERM 502 517121 - 517139 + G 73 -9 -3.29381 | opp_overlap 517132, overlap 517113 ATAGCAACAGGGCGA TCTGATTA TAA TAATCAGA TTAATAATGTTATGG tme 516095 - 518485 + | malic enzyme RMA_0530 520011 - 519598 - | hypothetical protein RMA_0531 520264 - 519977 - | AbrB family transcriptional regulator proP3 520419 - 521675 + | proline/betaine transporter TERM 503 523152 - 523163 + T 74 -3 -5.34309 | CTTGAATGATTAGTA TTAC GGAA GTAA TTTTTGTTTACTGAT mdh 525354 - 524392 - | malate dehydrogenase TERM 504 525496 - 525477 - H 84 -10 -3.55563 | overlap 525478 AGCTGATGGTTCAAA CCTCCACC TTCA GGTGGAGA AACTTTAGTTTGAAT TERM 505 525495 - 525478 - H 86 -11.3 -2.73124 | overlap 525477 GCTGATGGTTCAAAC CTCCACC TTCA GGTGGAG AAACTTTAGTTTGAA RMA_0537 525562 - 525960 + | transposase RMA_0538 527107 - 525986 - | transposase TERM 506 527235 - 527249 + r 79 -10 -2.79183 | TAGCTTAAACTCTAC GGCACT TCT AGTGCC TATCATCAACCTACC TERM 507 527254 - 527288 + r 76 -7.3 -4.18488 | gap 2, opp_overlap 527259 527260, overlap 527255 527256 527260 CTTCTAGTGCCTATC ATCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGAG TTTATTAAAATAGAT TERM 508 527255 - 527287 + r 84 -10.8 -3.10611 | gap 2, opp_overlap 527259 527260, overlap 527254 527256 527260 TTCTAGTGCCTATCA TCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGA GTTTATTAAAATAGA TERM 509 527256 - 527283 + r 78 -9.2 -3.37761 | gap 1, opp_overlap 527259 527260, overlap 527255 527254 527260 TCTAGTGCCTATCAT CAACCTACCGGCT CTC AGCCGGTAG-TGG TTGAGTTTATTAAAA TERM 510 527281 - 527259 - R 89 -12 -3.21218 | opp_overlap 527256 527255 527254 527260, overlap 527260 AGTGCCTATCATCAA CCTACCGGCT CTC AGCCGGTAGT GGTTGAGTTTATTAA TERM 511 527280 - 527260 - R 100 -15.5 -2.52516 | opp_overlap 527256 527255 527254 527260, overlap 527259 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTTATTA TERM 512 527260 - 527280 + r 100 -15.5 -2.84417 | opp_overlap 527260 527259, overlap 527256 527255 527254 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTTATTA TERM 513 527340 - 527328 - R 73 -7.7 -3.6692 | opp_overlap 527326, overlap 527326 GCTGAGTCGAAAATA CCATG AAA CATGG AATTTTAATAAAATA TERM 514 528312 - 528343 + r 77 -4.6 -5.1675 | opp_overlap 528316, overlap 528316 528340 AGGTGGAAATCTAGT AAAACCTATAAAAA TTTG TTTTTTTAGGTTTA TTTTTTAATAAATAA TERM 515 528316 - 528339 + r 76 -5.4 -5.0917 | opp_overlap 528316, overlap 528312 GGAAATCTAGTAAAA CCTATAAAAA TTTG TTTTTTTAGG TTTATTTTTTAATAA tlc2 530049 - 528523 - | ATP/ADP translocase TERM 516 530122 - 530163 + r 100 -14.5 -4.57837 | overlap 530124 TTGCAAGGCTTAGAG CTTTATAGGTCATTCCCGC ATAT GCGGGAATGACCTCAAACG TTTTTCAGAAACTGT TERM 517 530124 - 530161 + r 100 -15.7 -2.60211 | overlap 530122 GCAAGGCTTAGAGCT TTATAGGTCATTCCCGC ATAT GCGGGAATGACCTCAAA CGTTTTTCAGAAACT pyrG 531877 - 530258 - | CTP synthetase TERM 518 530443 - 530461 + g 71 -7.6 -3.56576 | overlap 530411 530439 530439 ATACTATTCCGTGTT TTTCAAAA ATA TTTTGAAA TTCATTATTAAATTT TERM 519 531490 - 531471 - G 76 -4.4 -5.05116 | gap 1 TCACAAATAATAAAA TCAAA-ACC CTT GGTGTTTGA AAATATAAAATCTTT kdsB 532614 - 531874 - | 3-deoxy-manno-octulosonate cytidylyltransferase mutT 533683 - 533372 - | ADP-ribose pyrophosphatase MutT TERM 520 533416 - 533434 + g 71 -7.5 -3.53811 | opp_overlap 533415 GATTCTGTAATTCAT GCTCATT TAAAC AATGAGC TTTAAGGAAAATCAA TERM 521 535123 - 535135 + G 72 -9.1 -2.51464 | opp_overlap 535084, overlap 535122 AAAAACTCCCTAGAT TGCCG CGT CGGCA CTTCGTGCCTCCTCG RMA_0544 533817 - 535403 + | hypothetical protein folE 535396 - 535965 + | GTP cyclohydrolase I TERM 522 536092 - 536059 - f 88 -6.1 -5.51165 | gap 1 AAAATTTTAAAAAAA TTG-GATCCCGTGG TCTCAAG CCACGGGATGACAA AATAAATGATTATAA TERM 523 536816 - 536803 - g 72 -2.5 -5.32882 | TATTACGATAAAAAA TTTAA GACA TTAAA AGATAATCCTGATAT proS 536098 - 537411 + | prolyl-tRNA synthetase TERM 524 537591 - 537614 + F 83 -11.2 -2.81464 | opp_overlap 537591 537599 537609 537612, overlap 537591 537596 ATTCTTCGTAGACAA TGATAGTATC ATAT GATACTATCA TATAATGAATAGTAA TERM 525 537614 - 537591 - f 87 -11.2 -3.48395 | opp_overlap 537591 537591 537596, overlap 537599 537609 537612 ATTCTTCGTAGACAA TGATAGTATC ATAT GATACTATCA TATAATGAATAGTAA TERM 526 537754 - 537744 - g 72 -2.6 -5.35222 | AAAACTTAGAAAAAA TAAT CAA ATTA AAACCATCCATTCTT RMA_0547 537616 - 538587 + | cell filamentation protein Fic TERM 527 538564 - 538582 + F 77 -9 -3.2082 | opp_overlap 538563 538564 538568, overlap 538568 AAAGGGGATAAGAAT CAAACTTA TTA TAAGTTTG TGTAGTTTTTAATGT TERM 528 538582 - 538564 - f 73 -9 -2.89234 | opp_overlap 538564 538568, overlap 538563 538568 AAAGGGGATAAGAAT CAAACTTA TTA TAAGTTTG TGTAGTTTTTAATGT RMA_0548 538646 - 538984 + | hypothetical protein TERM 529 539471 - 539495 + G 77 -8.7 -3.57144 | opp_overlap 539471 539470 539480 TGAAGTAATAAAAGC TCTAGTAAATC TAG GATTTTCTAGA TTTGAAGCTCAAAAC ruvA 538965 - 539603 + | Holliday junction DNA helicase motor protein TERM 530 539616 - 539656 + F 100 -13.2 -3.53811 | opp_overlap 539611 539629 539650 TGATAAATTAGCAGT TATTTTATATTAATTTTA ATTAC TAAAATTAATATAAAATA TTTAGAAAAAATACA TERM 531 540776 - 540813 + GF 76 -8.8 -3.48824 | overlap 540773 CTATTTTTTAGCTAT TATTAGTCATTATATT CGATTT AAAATAATGACTAATA TATTATTATCACCTG ruvB 540774 - 541835 + | Holliday junction DNA helicase B TERM 532 542584 - 542570 - gf 100 -7.2 -5.61596 | AGTTCTACAAAAAAA CATCTA AGC TAGATG CGATGGTTTCACCGA msbA1 541783 - 543591 + | multidrug resistance protein TERM 533 544082 - 544098 + G 74 -5.2 -4.64992 | AGCAAGGAAAATCCT GAAGTT TCTTT AACTTC TTTATATTTTTTGAC TERM 534 544429 - 544440 + G 73 -4.4 -5.00616 | opp_overlap 544429 TTCTACAGTAATTAA TCCT TTCA AGGA TTTTTTCAAAAGAGA ampG4 543764 - 545014 + | AmpG dacF 545173 - 546114 + | penicillin-binding protein dacF precursor rlpA 547264 - 546284 - | rare lipoprotein A precursor osmY 547847 - 547224 - | putative periplasmic or secreted lipoprotein ispZ 548591 - 548049 - | intracellular septation protein A RMA_0557 549473 - 548616 - | FTR1 family protein RMA_0558 549914 - 549474 - | hypothetical protein RMA_0559 551100 - 550060 - | hypothetical protein RMA_0560 551195 - 551821 + | protocatechuate-3,4-dioxygenase, beta subunit TERM 535 552077 - 552092 + G 71 -3.4 -5.1356 | TGTATTATAGTATTT TTATTA TCTA TAATAA TTTTTATTCCTAAAA tlpA 552011 - 552688 + | Thiol:disulfide interchange protein tlpA sppA1 552838 - 553752 + | Signal peptide peptidase SppA, 36K type TERM 536 553800 - 553784 - g 79 -3.7 -5.46698 | opp_overlap 553795, overlap 553787 553793 GTTAAAATTAAAAAA CTAGAAA ATT TTTCTGG CAGTCTGCCGGAATA TERM 537 553795 - 553813 + G 76 -9.6 -2.78463 | opp_overlap 553787 553784 553793, overlap 553804 AAAACTAGAAAATTT TTCTGGCA GTC TGCCGGAA TATGCTACAGAGCAT TERM 538 553964 - 553950 - g 73 -7.1 -3.96618 | TTGAAGCCCAAATAA GACCC CGTTC GGGTC TTGCCGTTAAACACG dut 553754 - 554200 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 539 554290 - 554314 + F 87 -8.8 -4.31379 | opp_overlap 554290 TTAGGTAAAAATAAA CCTATAAAAA TAAGT TTTTTATAGG TTTTACTGGATTCCT TERM 540 554314 - 554290 - f 93 -8.8 -4.89063 | opp_overlap 554290 TTAGGTAAAAATAAA CCTATAAAAA TAAGT TTTTTATAGG TTTTACTGGATTCCT TERM 541 554918 - 554908 - g 70 -4 -4.89477 | TCCTGAAGAAGAAAA TGTA TAT TACA ATAAGTGGCATAAAT mltE1 554411 - 556384 + | soluble lytic murein transglycosylase precursor RMA_0565 556455 - 557435 + | hypothetical protein TERM 542 557673 - 557683 + G 76 -2.6 -5.50499 | AAAATATATCTTTAC TAAT AAT ATTA TTTTTTTCAATATCA TERM 543 558023 - 558041 + G 73 -4.6 -4.96848 | TTTATAGGATATAGC GATATAAC GGC GTTACATC TTTTTCTATCACAAG mccF 557639 - 558595 + | microcin C7 self-immunity protein RMA_0567 561358 - 558818 - | endonuclease TERM 544 559372 - 559359 - G 82 -5.3 -5.34857 | TCAAATAAAATAAAA GCTTT GCTG AAAGC CGTGAGTTTTATTTG TERM 545 559762 - 559742 - G 86 -12.6 -2.88677 | overlap 559754 CATATAATTACTAGA CCCCGTGA TCAAG TCACGGGG TGACACAGAACCTTT TERM 546 560123 - 560113 - G 91 -2.6 -6.04324 | opp_overlap 560113 GTAAAAAAGAAAAAA TTTT AGG AAAA TCCTTTTTATCCGTT RMA_0568 561576 - 561866 + | hypothetical protein RMA_0569 562627 - 561899 - | putative glutamine amidotransferase TERM 547 562724 - 562778 + r 70 -8 -3.14463 | AGCCAGTATTTATGC TGACGTGGCAATCTCAGGAGTT TTTTTTATATT ATCTTATGAGATTGCCGCGTCG TTGCTAACGCAACTT coxA 564456 - 562834 - | cytochrome c oxidase polypeptide I TERM 548 564983 - 564997 + r 71 -2.9 -5.16133 | TATTGTTTAGTAATT TATCT AGTTC AGATA TTTTTGTATTATAAT coxB 566058 - 565045 - | cytochrome c oxidase polypeptide II TERM 549 566673 - 566634 - H 71 -9 -2.5474 | opp_overlap 566634 566646, overlap 566633 566631 566646 GTCTAGGCATAATAT TTATCTATATAAGTTAAT GAAA ATTAACTTATATAAAAAA TTAAATTTTAATCAA TERM 550 566684 - 566674 - H 72 -2.6 -5.38951 | overlap 566631 AACTTATATAAAAAA TTAA ATT TTAA TCAATAAAAAACTAA TERM 551 566723 - 566741 + GH 72 -4.7 -4.65722 | opp_overlap 566711 566723 AAATAAAACAAAATT TTACAAT TTTCT ATTGTAA TTTGTTTGTATATGG TERM 552 567483 - 567471 - gH 74 -3.3 -5.27938 | AGCGTCAAATAAAAA GCGGT GAT ACTGC AACCGTAATAACGGA TERM 553 567576 - 567562 - gH 70 -7.2 -3.73402 | opp_overlap 567561 ATATGTTTCATTAAA TCTTTC AGG GAAAGA ATATAATATATATCG nlpD2 566720 - 568177 + | membrane-bound metallopeptidase TERM 554 568232 - 568249 + GF 86 -11.3 -2.80622 | ACGACTCTTATGTCA TTCCCGC GAAA GCGGGAA TCTAGTAAAATCTAT TERM 555 568589 - 568599 + GF 74 -5.4 -4.71426 | opp_overlap 568587 568589 TGAATATTATCAATA TAGC AAT GCTA TTTTCTTAATAACGA lspA 568122 - 569030 + | lipoprotein signal peptidase RMA_0576 569133 - 569384 + | hypothetical protein TERM 556 571023 - 571043 + G 93 -14 -2.90723 | TGTAGTATCCTGTCA CCCCGTGG CTTGA CCACGGGG TCTAGTTAAAAATAC murD 569556 - 571052 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 557 571056 - 571073 + F 79 -2.8 -5.80727 | opp_overlap 571056, overlap 571049 571046 GGGTCTAGTTAAAAA TACTAA ATAATA TTAGTA TTTTTTATTGTTTTT ftsW 571170 - 572318 + | cell division protein ftsW TERM 558 572479 - 572450 - g 73 -8.8 -3.16659 | opp_overlap 572450 572449 572452, overlap 572449 572445 572452 AAACAATATATAAAG CAGGATATGAAA GTAATT TTTCATATCCTA GATTTAAAACGCTCA TERM 559 572452 - 572477 + G 75 -9.9 -2.64274 | opp_overlap 572450 572449 572445 572452, overlap 572450 572449 ACAATATATAAAGCA GGATATGAAAG TAAT TTTTCATATCC TAGATTTAAAACGCT TERM 560 572477 - 572452 - g 74 -9.2 -3.11905 | opp_overlap 572452 572450 572449, overlap 572450 572449 572445 ACAATATATAAAGCA GGATATGAAA GTAATT TTTCATATCC TAGATTTAAAACGCT TERM 561 572712 - 572690 - g 74 -6.4 -4.32607 | opp_overlap 572705 GGAAAAGTTAATAAA TTTTTTGCAA GCT TTGCTAAAAA GATAGCTATTTCTTA murG 572315 - 573445 + | N-acetylglucosaminyl transferase RMA_0580 573844 - 574512 + | hypothetical protein RMA_0581 574917 - 575261 + | hypothetical protein TERM 562 575299 - 575329 + T 74 -8.6 -3.31603 | opp_overlap 575306, overlap 575306 GTCCACGGGGTTTAG TTAAAAATACTAAT ATT ATTAGTATTTTTTA GTTGTTTTTCTGGAT TERM 563 575306 - 575322 + T 93 -6.7 -5.43514 | opp_overlap 575306, overlap 575299 GGGTTTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTTAGTTGTTTT TERM 564 575322 - 575306 - T 79 -6.7 -4.65895 | opp_overlap 575306 575299 GGGTTTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTTAGTTGTTTT RMA_0592 582131 - 581106 - | glycosyltransferase RMA_0593 582667 - 582122 - | hypothetical protein TERM 565 582435 - 582460 + g 79 -5.5 -5.08088 | TCTAGAGTGCTTTCA TGTGCATGTTT AAAG AAATATGCCCA TTTTTCTTGAAGGTT dapF 583100 - 583912 + | diaminopimelate epimerase RMA_0597 583887 - 585152 + | MiaB-like tRNA modifying enzyme TERM 566 585221 - 585207 - f 87 -4.3 -5.73672 | opp_overlap 585207 AAATAATTAAAAAAA TTCTG TAAAT CAGAA TTTTTAACTGGGTTG pheS 585234 - 586403 + | phenylalanyl-tRNA synthetase subunit alpha TERM 567 587095 - 587081 - g 76 -4.2 -5.08015 | AATTTAAAAAATAAA CCAAGC CCT GATTGG TTACGGAAATTATTA pheT 586400 - 588856 + | phenylalanyl-tRNA synthetase subunit beta dnaN 588861 - 590000 + | DNA polymerase III subunit beta TERM 568 590221 - 590266 + F 100 -11.1 -5.02476 | opp_overlap 590221 590222, overlap 590222 590225 TGAGAAATAATTAAA TCTGCCCTATGTCATTCCCGC GTAG GCGGGCATGACATCGAGTGGG TTTTTTGAGCCATAT TERM 569 590266 - 590221 - f 74 -6.7 -4.18044 | opp_overlap 590221 590222 590225, overlap 590222 TGAGAAATAATTAAA TCTGCCCTATGTCATTCCCGC GTAG GCGGGCATGACATCGAGTGGG TTTTTTGAGCCATAT TERM 570 590265 - 590222 - f 81 -10.2 -3.09742 | opp_overlap 590221 590222 590225, overlap 590221 GAGAAATAATTAAAT CTGCCCTATGTCATTCCCGC GTAG GCGGGCATGACATCGAGTGG GTTTTTTGAGCCATA TERM 571 590222 - 590265 + F 95 -12.4 -3.60762 | opp_overlap 590222 590221, overlap 590221 590225 GAGAAATAATTAAAT CTGCCCTATGTCATTCCCGC GTAG GCGGGCATGACATCGAGTGG GTTTTTTGAGCCATA TERM 572 590225 - 590262 + F 100 -12.7 -2.92111 | opp_overlap 590222 590221, overlap 590222 590221 AAATAATTAAATCTG CCCTATGTCATTCCCGC GTAG GCGGGCATGACATCGAG TGGGTTTTTTGAGCC RMA_0601 590367 - 590879 + | hypothetical protein TERM 573 591075 - 591056 - g 80 -5 -5.29445 | TGGCAAGAAGAAAAA GCTTTTGA GGTA TCAAACGC GAGTAGCAAGCCAAA leuS 591008 - 593515 + | leucyl-tRNA synthetase TERM 574 593678 - 593698 + T 90 -12.6 -2.91452 | TTTTTGAATCTGTCA TCCCGCGA CTTGA TCGCGGGA TCTAGTTAAAATACT rnd2 595000 - 594389 - | ribonuclease D RMA_0604 595462 - 595151 - | septum formation initiator TERM 575 595283 - 595294 + gr 74 -5.8 -4.46615 | overlap 595278 595277 AAGTTCTACTCTTGC GGCT CGTA AGCC TTTTAGTTCATCATA cdsA 596141 - 595437 - | phosphatidate cytidylyltransferase TERM 576 595651 - 595635 - GR 71 -6.7 -4.10934 | opp_overlap 595645 ACAACTAATTATAAA CAAATAA ATT TTATTTG AAAAATAGTAATTTT TERM 577 595768 - 595784 + gr 89 -10.9 -3.66666 | TTAGGACTAAGTTTC GGAGCAA GTG TTGCTCC TTTAAAAGTTTTACC uppS 596808 - 596101 - | undecaprenyl pyrophosphate synthetase TERM 578 596317 - 596331 + gr 79 -5.6 -5.06103 | AGCGTGTTGTATATC GCTGTC ACT GACTGC TTTTTTACCGCTTGT TERM 579 596895 - 596843 - R 84 -10.2 -3.4252 | gap 1, opp_overlap 596840, overlap 596844 596846 TGTGAGCGACTACAA GGAGCGTGACAATCTCATGAAAC AATATAAA ATTTC-TGAGATTATCACGCTCT CGGCTTTGCCTCTCC TERM 580 596894 - 596844 - R 100 -13.7 -2.65298 | gap 1, opp_overlap 596840, overlap 596843 596846 GTGAGCGACTACAAG GAGCGTGACAATCTCATGAAAC AATATAAA ATTTC-TGAGATTATCACGCTC TCGGCTTTGCCTCTC TERM 581 596892 - 596846 - R 81 -10.5 -2.86747 | gap 1, opp_overlap 596840, overlap 596844 596843 GAGCGACTACAAGGA GCGTGACAATCTCATGAAAC AATATAAA ATTTC-TGAGATTATCACGC TCTCGGCTTTGCCTC envZ 598396 - 596954 - | osmolarity sensor protein EnvZ TERM 582 597631 - 597621 - GR 71 -3.2 -5.03314 | opp_overlap 597616 597614, overlap 597603 TTCATTTTTAAAAAA GCAA GCC CTGC TTTTCTTATTTCTAA TERM 583 598265 - 598253 - GR 71 -7.7 -3.40112 | opp_overlap 598252 AGCATATTTCAAAGA GCTTG ATA CAAGC GAATTTTTCAAGATT ompR 599066 - 598371 - | PetR TERM 584 599093 - 599117 + H 84 -10 -3.48593 | overlap 599095 GTATTTCACTATTGT CATCCCGTGG CTTGA CCACGGGATC TTATGTCGCAGGCTG TERM 585 599095 - 599115 + H 90 -12.6 -3.31726 | overlap 599093 ATTTCACTATTGTCA TCCCGTGG CTTGA CCACGGGA TCTTATGTCGCAGGC TERM 586 599788 - 599774 - g 70 -4.2 -4.68456 | opp_overlap 599774 ACGAGTAAAAAAGAA GCTAAG GCT CTTGGC TATGATGATGCATTA ilvE 599267 - 600139 + | branched-chain amino acid aminotransferase dapA 600307 - 601209 + | dihydrodipicolinate synthase smpB 601188 - 601664 + | SsrA-binding protein TERM 587 601710 - 601751 + F 85 -10.3 -3.3907 | opp_overlap 601707, overlap 601692 601711 CTTTGTTACATAGCT CGTTATATGTCATTCCTGC TTGC GCGGGAATGACATATAGAA TTACTTAGACTTTAG TERM 588 601711 - 601750 + F 100 -13.8 -2.6296 | opp_overlap 601707, overlap 601710 TTTGTTACATAGCTC GTTATATGTCATTCCTGC TTGC GCGGGAATGACATATAGA ATTACTTAGACTTTA dsbA 601773 - 602597 + | Thiol:disulfide interchange protein dsbA sucD 603693 - 602815 - | succinyl-CoA synthetase subunit alpha sucC 605031 - 603871 - | succinyl-CoA synthetase subunit beta RMA_0617 605713 - 605438 - | AbrB family transcriptional regulator TERM 589 606433 - 606397 - R 74 -4 -5.17576 | opp_overlap 606407, overlap 606400 606407 CAGGAATCTAAAAAA CAATAAAAAATACTAA AATTA TTAGTATTTTTAACTA GATCCCGTGGACAAG TERM 590 606430 - 606400 - R 74 -5.7 -4.67173 | opp_overlap 606407, overlap 606397 606407 GAATCTAAAAAACAA TAAAAAATACTAA AATTA TTAGTATTTTTAA CTAGATCCCGTGGAC TERM 591 606423 - 606407 - R 86 -3.8 -5.80727 | opp_overlap 606407, overlap 606400 606397 AAAAACAATAAAAAA TACTAA AATTA TTAGTA TTTTTAACTAGATCC RMA_0618 608524 - 606488 - | acylamino-acid-releasing protein TERM 592 608007 - 608021 + g 75 -7.2 -4.15066 | TAAATCAGTTCTTTT TCTAGA GTA TCTAGA TTTAATTTGTAAATA RMA_0619 609247 - 608612 - | hypothetical protein TERM 593 608824 - 608808 - G 76 -2.9 -5.48825 | opp_overlap 608809, overlap 608809 GATGAGTCAAAAAAA TCACCAT AGG ACGGTGT TATTTTTTCAAATTC TERM 594 609509 - 609495 - R 72 -7.2 -3.83026 | opp_overlap 609495 609494 GGCTGTTATACTAAA GCTTAA TTT TTAAGC GTTTTTAGTATAACG TERM 595 610017 - 609978 - R 74 -6.9 -4.28067 | gap 1, opp_overlap 609984, overlap 609981 609984 CCAATAAGATATAAA TAACAAGATTATCAATAA TTAAG TTATTGATAATCTT-TCA TCAATGATATTAAAA TERM 596 610015 - 609981 - R 88 -8.9 -4.22858 | opp_overlap 609984, overlap 609978 609984 ATAAGATATAAATAA CAAGATTATCAATAA TTAAG TTATTGATAATCTTT CATCAATGATATTAA TERM 597 609984 - 610012 + r 95 -11.3 -3.77464 | opp_overlap 609984 609981 609978 AGATATAAATAACAA GATTATCAATAAT TAA GTTATTGATAATC TTTCATCAATGATAT TERM 598 610012 - 609984 - R 95 -10.6 -4.19887 | opp_overlap 609984, overlap 609981 609978 AGATATAAATAACAA GATTATCAATAA TTAAG TTATTGATAATC TTTCATCAATGATAT rbfA 610927 - 610574 - | ribosome-binding factor A RMA_0621 611401 - 610931 - | hypothetical protein TERM 599 611071 - 611093 + g 70 -8 -3.18634 | opp_overlap 611071, overlap 611069 611067 ATGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAGTTTTGTTAAA TERM 600 611093 - 611071 - G 86 -8 -4.71828 | opp_overlap 611071 611069 611067 ATGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAGTTTTGTTAAA RMA_0622 611495 - 612022 + | RDD family protein recR 612161 - 612772 + | recombination protein RecR TERM 601 614495 - 614507 + T 79 -4.9 -5.1963 | opp_overlap 614495 GTATTCAAAAAATAT TTCTA CTT TAGAA TTTTTATTAATTAAA TERM 602 614619 - 614632 + T 70 -4.5 -4.80656 | TCCAATAGCTTTTTT GGGGT TTTT ACCTC TTTTATCTTCTTAAT TERM 603 614795 - 614813 + T 90 -9 -4.58283 | opp_overlap 614798 GCGAGTTTCAAGTAG TAACCATA AAA TATGGTTA TTTTTAGAAAAGTTA TERM 604 614848 - 614892 + T 93 -11 -4.09805 | gap 1, overlap 614851 AAGACTTTTTTGATT C-CATGTATGATGCCTTGTTA AAAA TAACTAGGCATCATACATTAG TTTAATTCTTAGTCA TERM 605 614851 - 614888 + T 100 -17.3 -3.65261 | overlap 614848 ACTTTTTTGATTCCA TGTATGATGCCTTGTTA AAAA TAACTAGGCATCATACA TTAGTTTAATTCTTA ppnK 615775 - 614933 - | inorganic polyphosphate/ATP-NAD kinase TERM 606 615696 - 615708 + g 77 -4.9 -5.10526 | GCTATTTTATTTATA TTCAT TAT ATGAA TTTCTTTTTTAATAT TERM 607 617239 - 617221 - g 70 -2.3 -5.28176 | GTCATTGATAAAAAA GGACTGC TTGCT GCAAACC CAATGCTGTCTATGC RMA_0627 615784 - 617469 + | metallo-beta-lactamase family hydrolase TERM 608 617626 - 617601 - f 79 -3.4 -5.626 | opp_overlap 617601 TATTTGATAAAAAAA CCATATAAAA ACAAGG TTTGATATGG TTTTACTGGATTCCC gpsA 617718 - 618710 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase RMA_0629 619482 - 620432 + | putative permease RMA_0630 620490 - 621365 + | putative hydrolase/acyltransferase TERM 609 621502 - 621478 - f 100 -10.3 -4.88795 | opp_overlap 621478 ATTTAATAAAATAAA CATATAAAAAA CTG TTTTTTATATG TTTTGTTGGATTCCT TERM 610 621478 - 621502 + F 95 -10.3 -4.72631 | opp_overlap 621478 ATTTAATAAAATAAA CATATAAAAAA CTG TTTTTTATATG TTTTGTTGGATTCCT TERM 611 622220 - 622209 - g 77 -5.8 -4.71708 | AACAATAAACCAAAA TCCG TTAC CGGA GTTAAAATTCAAAAT trxB1 621558 - 622499 + | thioredoxin reductase TERM 612 622487 - 622505 + F 79 -4.7 -5.1287 | opp_overlap 622493 TGAGGCTGAAACATT TCTAAAT AAATA ATTTAGA TTTTTTAGCTGTAAA RMA_0632 622730 - 623056 + | hypothetical protein TERM 613 624606 - 624588 - g 86 -10.4 -3.57144 | CCCGTTACCTGCAAA TGCAAAAG CAC CTTTTGCA GGACGTAAAGCTTCA gabD 623218 - 624696 + | succinate semialdehyde dehydrogenase TERM 614 624725 - 624742 + F 77 -9.9 -2.78935 | GTTCCTTTTATGTCA TTCCTGC GAAA GCAGGAA TCTAGTAAAGAATAT RMA_0634 624854 - 625204 + | hypothetical protein lgtD 625197 - 626042 + | glycosyl transferase TERM 615 626160 - 626137 - f 90 -8.4 -4.77173 | opp_overlap 626137 TTTTGACAAAATAAA CATATAAAAA CAAG TTTTTATATG TTTTTCTGGATTCCC TERM 616 626137 - 626160 + F 90 -8.4 -4.91712 | opp_overlap 626137 TTTTGACAAAATAAA CATATAAAAA CAAG TTTTTATATG TTTTTCTGGATTCCC TERM 617 626270 - 626304 + G 79 -9.4 -3.34895 | opp_overlap 626275, overlap 626275 TAAATCCAGAGCAGC AAAAAGCAGTTCTTCA CAC TGAAGGACCGCTTTTA TTGCTTGCAGGTGCA TERM 618 626299 - 626275 - g 100 -9.3 -4.79223 | opp_overlap 626270 626275 CCAGAGCAGCAAAAA GCAGTTCTTCA CAC TGAAGGACCGC TTTTATTGCTTGCAG TERM 619 626275 - 626299 + G 100 -9.3 -4.78572 | opp_overlap 626275, overlap 626270 CCAGAGCAGCAAAAA GCAGTTCTTCA CAC TGAAGGACCGC TTTTATTGCTTGCAG TERM 620 627746 - 627731 - g 95 -9 -5.64873 | TTCAAGAAGAAAAAA CCGAAG AAGC CTTCGG TAGAATCGAAAATAT uvrD 626227 - 628188 + | DNA helicase II TERM 621 628848 - 628836 - f 72 -4.9 -4.90525 | overlap 628831 TAACCTTAAAGAAAA TGTTT CAG AAACA ACATTAGGTAACTAC RMA_0637 629651 - 631003 + | hypothetical protein TERM 622 631096 - 631116 + T 71 -8.2 -3.31726 | overlap 631107 GATTTTTTATTGTCA CCCCGTGG CGTGA CCACAGGG TCTTGTATCACCAGC TERM 623 631164 - 631144 - T 84 -11.2 -3.04263 | overlap 631146 AGCTGAGTCCTAAGA TACCGCGA TCAAG TCGCGGTA TGACATTAAAGGTTA TERM 624 631162 - 631146 - T 76 -9.4 -3.07895 | overlap 631144 CTGAGTCCTAAGATA CCGCGA TCAAG TCGCGG TATGACATTAAAGGT tdcB 632220 - 631180 - | threonine dehydratase lon1 632294 - 634633 + | ATP-dependent protease La TERM 625 634760 - 634776 + T 74 -6.6 -4.3255 | GACTATCTTGAACTC GCCTAT TATTT ATAGGC TTTCTTCCTTACACC TERM 626 634861 - 634897 + T 87 -7.6 -4.82901 | opp_overlap 634871, overlap 634871 TGTCATCACAGGATC CAGTTAAAAATACTAA TAATT TTAGTATTTTTTATTG TTTTTATGGACCCCA TERM 627 634871 - 634887 + T 86 -3.8 -5.80727 | opp_overlap 634871, overlap 634861 GGATCCAGTTAAAAA TACTAA TAATT TTAGTA TTTTTTATTGTTTTT RMA_0642 636164 - 635796 - | hypothetical protein TERM 628 636540 - 636528 - H 75 -4.9 -5.07652 | CCTCTCAAAATAAAA TTCAA TTC TTGAA ATCATTTGAGTATAC TERM 629 637202 - 637224 + H 95 -11.4 -3.80745 | opp_overlap 637193, overlap 637193 TATAAATTAATTGTA TAGGTGTTAC TTA GTAACGCCTA TTATATTAATTATTT TERM 630 637793 - 637814 + G 71 -6.7 -4.21631 | CGTATCAATATAGTT TATTATCGT AAAG ACGGTAATA TTTCTTGGGTAGATT yhbH 637259 - 637837 + | putative sigma(54) modulation protein folD 639233 - 638361 - | methylenetetrahydrofolate dehydrogenase trxB2 640393 - 639380 - | thioredoxin reductase TERM 631 640772 - 640761 - g 71 -3 -5.1861 | opp_overlap 640761 GCTATTATGAAAAAA TCTT TTTT AAGA TTTCTACCTATCCTA famC 640740 - 641084 + | P pilus assembly protein, chaperone PapD TERM 632 641328 - 641341 + F 70 -8.1 -3.05384 | ATCTCTGAATCTCTT GGCGA TACT TCGCC TTGAATCGCAGCGGA TERM 633 645375 - 645387 + G 78 -7.7 -4.18934 | TAAAGGTCATTCATC CGGTA TTA TACCG TTTATTAAAGTAATG TERM 634 646477 - 646462 - g 72 -2.6 -5.29445 | gap 1, overlap 646456 646464 TCCGAAGAAGAAAAA CAGGTTT TCA AAACC-G CTTACGAAATTGATC TERM 635 646476 - 646464 - g 71 -6.3 -4.27297 | overlap 646456 646462 CGAAGAAGAAAAACA GGTTT TCA AAACC GCTTACGAAATTGAT nrdA 644926 - 646779 + | ribonucleotide-diphosphate reductase subunit alpha TERM 636 647032 - 647050 + F 73 -4.4 -5.00884 | opp_overlap 647036, overlap 647035 647036 ATATTGTTGAGATGC GAAACGGC TAT GCCGATGC TTTTTTAGCAAGAGT TERM 637 647046 - 647036 - f 75 -8.2 -3.63627 | opp_overlap 647035 647032 647036 TGTTGAGATGCGAAA CGGC TAT GCCG ATGCTTTTTTAGCAA nrdB 647662 - 648672 + | ribonucleotide-diphosphate reductase subunit beta TERM 638 648786 - 648760 - f 87 -5.4 -5.70522 | AACAATAACAAAAAA TTAAAAATAC CTGATCT GTATTTTTAA AAATTTCGAGTAATT TERM 639 650522 - 650512 - g 73 -4 -5.05782 | ATTTAGCTCAAAAAA CAAA TTA TTTG GAAGGGCAATTGCCG TERM 640 650816 - 650795 - g 71 -8.9 -2.96237 | opp_overlap 650798, overlap 650794 650798 TAATTTTAAAAATAT TAATTTAGC AGAG GCTAAATTA CCTGATAATTTAATG RMA_0658 648789 - 651656 + | hypothetical protein TERM 641 651896 - 651908 + T 76 -6.3 -4.56969 | opp_overlap 651896 651895 CCTGATGCAGACAAG GCATT GAC AATGC TTTATTTATGACCTT miaA 654786 - 653695 - | tRNA delta(2)-isopentenylpyrophosphate transferase exoC 656725 - 655337 - | phosphomannomutase TERM 642 656049 - 656066 + g 70 -7 -3.89346 | ACCACTTTTATTAGC TCCTGC AAATTA GCAGGA TTTGTAGGATCAGGA TERM 643 656795 - 656777 - R 82 -8.8 -4.08767 | opp_overlap 656753, overlap 656752 GTCATTCCTGCAAAA GAGCCTTG TTG CATGGCTC GGAAAACCTACTCGA TERM 644 656846 - 656803 - R 74 -9 -3.04715 | overlap 656802 656806 CATGGCTCGGAAAAC CTACTCGATGTCATTCCCAC ATAG GCGGGAATGACATAAAACAA TCCATGCAACAACAC TERM 645 656843 - 656806 - R 80 -10.7 -2.74605 | overlap 656803 656802 GGCTCGGAAAACCTA CTCGATGTCATTCCCAC ATAG GCGGGAATGACATAAAA CAATCCATGCAACAA abcT2 657627 - 656896 - | ABC transporter ATP-binding protein TERM 646 657728 - 657714 - R 74 -5.8 -4.68424 | opp_overlap 657714 CAATCCAGTTAAAAA TACTAA TCT TTAGTA TTTTTTTTAATTATT TERM 647 657714 - 657728 + r 100 -5.8 -6.00814 | opp_overlap 657714 CAATCCAGTTAAAAA TACTAA TCT TTAGTA TTTTTTTTAATTATT RMA_0666 658386 - 657802 - | hypothetical protein RMA_0667 658951 - 658355 - | hypothetical protein kpsF 659931 - 658957 - | KpsF pnp 662360 - 660123 - | polynucleotide phosphorylase/polyadenylase TERM 648 660930 - 660944 + g 75 -8.6 -3.34344 | opp_overlap 660930 660929 660927 AATATCCGATAATAC GGCAAA TTT TTTGCC TTCCTTAACAAGTCC TERM 649 661835 - 661846 + g 70 -4.4 -4.81083 | opp_overlap 661835 CTGCAACTACTAAAT CAAG CTGA CTTG TTTTTAATAATTCAA TERM 650 662480 - 662453 - R 80 -9.2 -3.75665 | gap 1 GGATATTTGACGAAA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGAATGACGATCATC rpsO 662807 - 662499 - | 30S ribosomal protein S15 truB 663853 - 662810 - | tRNA pseudouridine synthase B TERM 651 663752 - 663771 + g 83 -2.2 -5.90981 | gap 1, overlap 663755 AGTACCGGCATGTCC TATCTTGGT TTT ACCGAG-TA TTTTTTTTACTATGC TERM 652 663755 - 663769 + g 76 -6.4 -4.59226 | overlap 663752 ACCGGCATGTCCTAT CTTGGT TTT ACCGAG TATTTTTTTTACTAT TERM 653 664135 - 664147 + G 83 -7.7 -4.7416 | TACTATGATCGGTGC CGAGA CTA TCTCG TTTTTGAAGTTTTGG TERM 654 665269 - 665255 - g 74 -3.5 -5.22258 | GAAATGAAAATAAAA GGCAA AGCTG CTGCC GACGTGATAGGTACA tlc4 663929 - 665467 + | ATP/ADP translocase sca4 665759 - 668842 + | cell surface antigen Sca4 TERM 655 668953 - 668963 + T 71 -6.8 -4.005 | opp_overlap 668952 TTTTTATAACAGGAT GGCA GCT TGCC TTTATGCATTAGTTT hipB 669360 - 668965 - | putative transcriptional regulator rbn 669849 - 670715 + | putative ribonuclease BN glnA 671725 - 670880 - | glutamine synthetase RMA_0677 671697 - 672434 + | hypothetical protein def2 672690 - 673259 + | polypeptide deformylase RMA_0679 673464 - 673616 + | antitoxin of toxin-antitoxin addA 674839 - 674132 - | hypothetical protein RMA_0682 676877 - 675063 - | hypothetical protein TERM 656 676994 - 676959 - R 95 -8.6 -5.05782 | opp_overlap 676969, overlap 676969 ACGGAGTCCAAAAAA CAATAAAAAATACTAA TATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 657 676984 - 676969 - R 90 -4.8 -5.80727 | opp_overlap 676969, overlap 676959 AAAAACAATAAAAAA TACTAA TATT TTAGTA TTTTTAACTGGATCC ppdK 679775 - 677124 - | pyruvate phosphate dikinase TERM 658 677399 - 677369 - G 83 -7 -4.66609 | opp_overlap 677359 GATCGGATTCAAAAA TCTTTTCTTCTAAA TAA TATGGAAGAAAAGA GGCAATATCATCTCT TERM 659 678704 - 678715 + g 72 -5.8 -4.42748 | opp_overlap 678704 678703 CAGCAATATTAATAG CAGC GATG GCTG TTCTTTTTGCAGTAC TERM 660 678953 - 678942 - G 70 -4.4 -4.7497 | opp_overlap 678942 GGCATTTATTAAAAA CTCT CCAA AGAG CTTTTTTTCTCCTGT TERM 661 680262 - 680250 - H 76 -6.3 -4.67904 | GATCAACTTCAAAAA GAACT AGG AGTTC ACAAGACGAGGAACG TERM 662 680389 - 680371 - H 74 -7.4 -4.14392 | overlap 680375 TGGTAAGGGTGAAAA GGTACGGT AAG AGCGTACC GGTAAGTTGGTAACA RMA_0684 680701 - 681369 + | glutathione S-transferase bpl1 682268 - 681480 - | biotin-protein ligase bioY2 682308 - 682850 + | BioY family protein TERM 663 682883 - 682927 + F 85 -8 -4.57569 | gap 1, opp_overlap 682884 682885, overlap 682884 682886 AAACAGTGGATCTAA AGTG-TCGATGTCATTTCCGC TTGC GCGGGAATGACATCGAGTAGG TTTTTCGAGCCATGC TERM 664 682884 - 682926 + F 88 -11.5 -3.3422 | gap 1, opp_overlap 682884 682885, overlap 682883 682886 AACAGTGGATCTAAA GTG-TCGATGTCATTTCCGC TTGC GCGGGAATGACATCGAGTAG GTTTTTCGAGCCATG TERM 665 682925 - 682884 - f 77 -8.7 -3.66646 | opp_overlap 682883 682884 682886, overlap 682885 AACAGTGGATCTAAA GTGTCGATGTCATTTCCGC TTGC GCGGGAATGACATCGAGTA GGTTTTTCGAGCCAT TERM 666 682924 - 682885 - f 90 -12.2 -2.79505 | opp_overlap 682884 682883 682886, overlap 682884 ACAGTGGATCTAAAG TGTCGATGTCATTTCCGC TTGC GCGGGAATGACATCGAGT AGGTTTTTCGAGCCA TERM 667 682886 - 682923 + F 100 -17.9 -2.83903 | opp_overlap 682885 682884, overlap 682884 682883 CAGTGGATCTAAAGT GTCGATGTCATTTCCGC TTGC GCGGGAATGACATCGAG TAGGTTTTTCGAGCC folC 683027 - 684313 + | folylpolyglutamate synthase sodB 684457 - 685113 + | superoxide dismutase TERM 668 685919 - 685901 - g 74 -3.2 -5.31877 | overlap 685891 ATTGACGATAAAAAA TATATCGA CGG TGGATATA GAGATAATATACCAA rssA 685118 - 686914 + | putative esterase of the alpha/beta hydrolase superfamily protein birA 687023 - 687835 + | biotin-(acetyl-CoA carboxylase) ligase TERM 669 688472 - 688462 - f 74 -4 -5.30575 | opp_overlap 688462, overlap 688454 GAAAAAGGTAAAAAA TCTT ATC AAGA TACTTTACTGGAAGA RMA_0691 688712 - 689128 + | hypothetical protein TERM 670 690124 - 690109 - g 77 -9 -3.62046 | opp_overlap 690111 CTACTTGGTGAAGAA GAGGCA ATAT TGCCTC TATCGCAGCTTTATT RMA_0693 690088 - 690495 + | hypothetical protein TERM 671 690642 - 690669 + F 100 -18.6 -3.14261 | overlap 690634 690634 GCGTGGATAGGTTTA TGTCATTCCCGC CTAC GCGGGAATGACA TTGAGTAGATTTTTC RMA_0697 693299 - 693616 + | nucleotidyltransferase substrate binding protein RMA_0699 693912 - 694085 + | hypothetical protein RMA_0700 694072 - 694401 + | hypothetical protein TERM 672 694742 - 694720 - g 77 -3.4 -5.40004 | overlap 694712 694721 694722 TACGAAAGCAAAAAA CGTTTGCATG AAG CACGCAAAAA GCAAAAAATTGTCGT TERM 673 694836 - 694823 - g 86 -2.5 -5.86332 | CTAAGCTAAAAAAAA TAAAA GAAT TTTTA AAAGACGGAGATAAA infC 694444 - 695025 + | translation initiation factor IF-3 TERM 674 696150 - 696133 - g 76 -9.9 -2.8355 | overlap 696132 AGATAATAAATTAAC CCCTGAA GAAT TTCAGGG CGGAGGGTTTACCAT pdhC 695171 - 696409 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 675 696417 - 696444 + F 86 -11.4 -2.80443 | gap 1, opp_overlap 696410, overlap 696407 696441 TGATATAAGTCGTCA TTGCGA-GCAGCC ATA GGCTGCGTTGCAA TCTCGTCAAATATCC prfA 696542 - 697627 + | peptide chain release factor 1 TERM 676 699320 - 699308 - gf 82 -4.9 -5.37593 | overlap 699300 CTCTAAAGCAAAAAA TATTG CCG CAATA GGAACGTTAAAAACT recJ 697572 - 699398 + | single-stranded-DNA-specific exonuclease RecJ RMA_0705 699444 - 700766 + | putative methyltransferase rho 701107 - 702513 + | transcription termination factor Rho sppA2 702639 - 703556 + | Signal peptide peptidase SppA, 36K type TERM 677 703775 - 703751 - g 74 -5.2 -4.81249 | CCTGAAAGCGAAAAA TTCTATAATA CGGTT TATTACAGAA TGCCTAAAAATTTAT himD 703556 - 703801 + | integration host factor beta-subunit TERM 678 703891 - 703905 + F 70 -7.2 -3.6106 | ATATTTTTCCATGGG TCTTCA TAT TGAAGA TTTAGAACTCTTCAA TERM 679 704162 - 704146 - f 71 -2.3 -5.37593 | overlap 704148 CTTTAAAGGAAAAAA CATCATC AAT AATGATA TATTTAGAAAAAGAA TERM 680 704826 - 704802 - f 77 -8.7 -3.694 | overlap 704807 ATCGAAAATAATGAA TATAAGTGCAA AAC TTGCACATATA AATAAAGAAAGACTT TERM 681 704821 - 704807 - f 79 -8.6 -3.80745 | overlap 704802 AAATAATGAATATAA GTGCAA AAC TTGCAC ATATAAATAAAGAAA RMA_0713 707761 - 708921 + | integrase RMA_0714 709137 - 709760 + | Phage-associated protein RMA_0715 709757 - 710017 + | putative toxin of toxin-antitoxin RMA_0716 710474 - 710788 + | hypothetical protein traE 710788 - 711342 + | conjugative transfer protein TraE RMA_0718 711339 - 711794 + | hypothetical protein RMA_0719 711733 - 712086 + | hypothetical protein traB 712111 - 713523 + | F pilus assembly protein TraB traV 713523 - 713762 + | conjugative transfer protein TraV TERM 682 714344 - 714354 + G 79 -4 -5.42975 | overlap 714352 TTATCTGAGCAGATT TTAC CCG GTAA TTTTTCTTTATATGA RMA_0722 713762 - 716281 + | conjugative transfer protein TraC TERM 683 716445 - 716488 + G 89 -7.8 -5.31275 | opp_overlap 716445, overlap 716447 ATATATTTTATAATA TCTTACTACTGATAATATAT ATTT GTATGTTATTAGTAGTAATA TTTTTTATAATAAGA TERM 684 716447 - 716486 + G 100 -10.4 -4.29153 | opp_overlap 716445, overlap 716445 ATATTTTATAATATC TTACTACTGATAATATAT ATTT GTATGTTATTAGTAGTAA TATTTTTTATAATAA RMA_0723 716369 - 717955 + | ATPase family protein traU 719018 - 719998 + | conjugal DNA transfer protein TraU trbC 719983 - 720450 + | conjugative transfer protein TrbC TERM 685 721099 - 721082 - gf 79 -8.5 -3.83568 | GCATATGCATAATAA TCAAGCA ATAA TGCTTGA TGTAAGAGCAGCAAT traN 720420 - 722246 + | conjugative transfer protein TraN traF 722212 - 723123 + | F pilus assembly protein TraF traH 723138 - 724478 + | F pilus assembly protein TraH TERM 686 726431 - 726414 - g 70 -4.1 -4.71186 | overlap 726415 AGTAGTAATAGAAAA GGCACTA GTAC TAGTGCT ACAGGAAGTATTGGC traG 724557 - 727286 + | conjugative transfer protein TraG RMA_0732 727264 - 728466 + | TPR repeat-containing protein traD_F 728456 - 730162 + | putative conjugative transfer protein TraD RMA_0734 731435 - 730392 - | transposase traA_Ti 735615 - 731479 - | conjugal transfer protein TraA TERM 687 732419 - 732407 - G 70 -4.1 -4.68103 | CTAATCTCAACAAAA GAACC TCT GATTC TGCCAAATGAACGTT TERM 688 735731 - 735716 - H 82 -6.2 -5.00339 | opp_overlap 735714 735716 ACCAACAAGCAAAAA TAAACC TTTA GGTTTA TATATTGCGTTAACC TERM 689 736087 - 736072 - H 73 -9 -2.81738 | AATAACTGGAGGATA CTTGGG GGTA CCCAAG TAGAAGGTTGGTATA TERM 690 736901 - 736918 + G 71 -5.7 -4.48987 | AGCTGTAGTACTTGC TTTTCTA AGTG TAGAAAA TTTTGATTCTGCAAA TERM 691 737115 - 737093 - g 79 -9.2 -3.48024 | overlap 737091 TCCGATTATTAAAGA TTTCAGCCAA CGT TTGGCTGATA CAGGAAAACCCAAAA RMA_0736 736269 - 737219 + | transposase TERM 692 738248 - 738219 - T 79 -7.4 -4.36914 | opp_overlap 738219 GTTTTTGTTATAAAA TTTGCTAAAAAT GCGTAA ATTTTCAGCAAA TTGTCGTTTTTTACT RMA_0739 739035 - 738541 - | hypothetical protein RMA_0740 739786 - 739025 - | transposase TERM 693 739345 - 739366 + g 74 -9.5 -2.98493 | overlap 739341 ATCTATACTCTTTAC GTGCAGCTT GTAA AAGCTGTAC TAGTTTAGTAGTAGA TERM 694 740404 - 740370 - R 70 -7.3 -3.74872 | gap 2, opp_overlap 740377 740378, overlap 740371 740375 740378 AGTGATCTCAGTAAA CTCAACCACTACCGGCT GAG AGCCGGTAG-G-TTGAT GATAGGCACTAGAAG TERM 695 740403 - 740371 - R 83 -10.8 -2.84602 | gap 2, opp_overlap 740377 740378, overlap 740370 740375 740378 GTGATCTCAGTAAAC TCAACCACTACCGGCT GAG AGCCGGTAG-G-TTGA TGATAGGCACTAGAA TERM 696 740402 - 740375 - R 77 -9.2 -3.30701 | gap 1, opp_overlap 740377 740378, overlap 740371 740370 740378 TCTCAGTAAACTCAA CCA-CTACCGGCT GAG AGCCGGTAGGTTG ATGATAGGCACTAGA TERM 697 740377 - 740399 + r 89 -12 -3.21218 | opp_overlap 740375 740371 740370 740378, overlap 740378 TCAGTAAACTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 698 740398 - 740378 - R 100 -15.5 -2.82602 | opp_overlap 740377 740378, overlap 740375 740371 740370 CAGTAAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 699 740378 - 740398 + r 100 -15.5 -2.52516 | opp_overlap 740378 740375 740371 740370, overlap 740377 CAGTAAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 700 740423 - 740409 - R 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_0742 740886 - 740443 - | transposase TERM 701 740952 - 740971 + H 84 -10 -3.55563 | overlap 740953 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 702 740953 - 740970 + H 86 -11.3 -2.73124 | overlap 740952 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC RMA_0745 742440 - 742772 + | transposase RMA_0746 742738 - 743607 + | transposase RMA_0747 744826 - 743852 - | transposase TERM 703 744002 - 743986 - G 81 -8.1 -4.18494 | opp_overlap 743986 743982 TATTTTTAGGTAAAA TTCTATG AAT CATAGAA TTCATTTTTTCCACT TERM 704 743986 - 744002 + g 79 -8.1 -3.93769 | opp_overlap 743986, overlap 743982 TATTTTTAGGTAAAA TTCTATG AAT CATAGAA TTCATTTTTTCCACT TERM 705 744829 - 744858 + H 83 -9.6 -3.79995 | TTCTGTTCATCATTA CCTATTTAAAAT CTTATT ATTTTAAATAGG TTCTGTTCTACTTAC RMA_0748 745038 - 746159 + | transposase RMA_0749 746776 - 746171 - | transposase RMA_0750 747230 - 748666 + | transposase TERM 706 748763 - 748748 - T 74 -7.6 -3.91488 | overlap 748753 AATCTTTCCAAATAA GCATAC GCAT GTATGC AACTTATACAATCCT dnaE2 757167 - 748783 - | DNA polymerase III alpha chain TERM 707 748866 - 748881 + g 72 -4.8 -4.74611 | GGTTAATATGCTCTT GAAAAT TATT ATTTTC TTCTTTTTTATCCTG TERM 708 752952 - 752972 + g 73 -6.9 -3.98826 | opp_overlap 752952 TGGTATAATTAATAT TGAGGTCAT AGT ATGGCTTCA TTTCTAACTTAATAA TERM 709 754121 - 754105 - G 84 -5.9 -5.24129 | opp_overlap 754092, overlap 754106 TTCTTTGACAAAAAA CTCAAAG TAC CTTTGAA TAGAAAACATTGCAG TERM 710 754120 - 754106 - G 70 -7.2 -3.73995 | opp_overlap 754092, overlap 754105 TCTTTGACAAAAAAC TCAAAG TAC CTTTGA ATAGAAAACATTGCA TERM 711 755836 - 755850 + g 72 -2.8 -5.35224 | CTGGGGAATATTTTC TTGCTC TAA GAGGAA TTTTCTTTTTCTAGG TERM 712 755927 - 755939 + g 83 -6.3 -4.88711 | opp_overlap 755927 ACTCTATCTACATCA GCATA CTT TATGC TTTTTGCTATATTAT TERM 713 756098 - 756127 + g 76 -6.7 -4.49311 | opp_overlap 756101, overlap 756101 GGTATGTTGTGTTGT AAATCATTATAAT AAAA ATTATAATGATTA TTTTCTAATGATAAT TERM 714 756124 - 756101 - G 73 -8.4 -3.53091 | opp_overlap 756101 756098 ATGTTGTGTTGTAAA TCATTATAAT AAAA ATTATAATGA TTATTTTCTAATGAT TERM 715 756101 - 756124 + g 83 -8.4 -4.35644 | opp_overlap 756101, overlap 756098 ATGTTGTGTTGTAAA TCATTATAAT AAAA ATTATAATGA TTATTTTCTAATGAT traD_Ti 757523 - 757819 + | conjugal transfer protein TraD spoT6 758504 - 757845 - | guanosine polyphosphate pyrophosphohydrolase/synthetase TERM 716 758650 - 758614 - R 70 -8.3 -3.17797 | opp_overlap 758613 758614 758619, overlap 758619 TTTATAGATATTGAA GTAAAGTCTTGTAAA TATTTAT TTTACAAGACTTTAA GTTATTTAGTAATTA TERM 717 758614 - 758650 + r 70 -8.3 -3.02233 | opp_overlap 758614 758619, overlap 758613 758619 TTTATAGATATTGAA GTAAAGTCTTGTAAA TATTTAT TTTACAAGACTTTAA GTTATTTAGTAATTA TERM 718 758645 - 758619 - R 77 -8.2 -3.95148 | opp_overlap 758614 758613 758619, overlap 758614 AGATATTGAAGTAAA GTCTTGTAAA TATTTAT TTTACAAGAC TTTAAGTTATTTAGT TERM 719 758619 - 758645 + r 77 -8.2 -3.90038 | opp_overlap 758619 758614, overlap 758614 758613 AGATATTGAAGTAAA GTCTTGTAAA TATTTAT TTTACAAGAC TTTAAGTTATTTAGT RMA_0754 759679 - 758663 - | Signal transduction histidine kinase TERM 720 759663 - 759608 - G 95 -4.9 -6.15259 | overlap 759610 TAAGTTAAAAAAAAA CAGCTCAGAGGTTAAGGTGATAAAA TTTTGC TGTTTTAAACTTAACCTCTGAACTA GAGTTGCACCATGCA TERM 721 759661 - 759610 - G 74 -5.3 -4.70383 | overlap 759608 AGTTAAAAAAAAACA GCTCAGAGGTTAAGGTGATAAAA TTTTGC TGTTTTAAACTTAACCTCTGAAC TAGAGTTGCACCATG TERM 722 759926 - 759949 + H 75 -8.4 -3.76141 | opp_overlap 759938 759946, overlap 759923 GGCATTTAAGCCTAT TTTATACTAT AATT ATAGTATAAA TATTTTAATCATAAT dam2 759968 - 760768 + | site-specific DNA adenine methylase RMA_0756 762733 - 761012 - | hypothetical protein TERM 723 762256 - 762275 + g 88 -7.9 -5.10029 | overlap 762235 762268 GTTGAGGCAAAATTT CTTTGGG TTTGAC CCCAAAG TTTTTTGGAGTTGGT RMA_0757 763296 - 763451 + | hypothetical protein cmk 763545 - 764234 + | cytidylate kinase rpsA 764382 - 766088 + | 30S ribosomal protein S1 TERM 724 766372 - 766388 + G 71 -6.7 -4.20367 | opp_overlap 766375, overlap 766375 ATCATATGGCAAACT TAATTGT TGC ACAATTA TTGTTTCTTGAAGCA TERM 725 766436 - 766419 - g 79 -5.7 -5.15117 | opp_overlap 766421 GAAAATCCTAAAAAA GATATAT ATAT ATATATC AATTCCCCCGGAGGA clpP 766200 - 766850 + | ATP-dependent Clp protease proteolytic subunit fni 769554 - 770594 + | isopentenyl pyrophosphate isomerase RMA_0767 770892 - 770743 - | putative acetyltransferase RMA_0769 771592 - 771134 - | acetyltransferase GNAT family protein RMA_0770 772169 - 771651 - | hypothetical protein TERM 726 771809 - 771830 + g 73 -4.6 -4.91459 | TAATTTTATGATCTA CTAAATTT AAATAA AAATTTAG TTTTTCTGCATATTC TERM 727 772301 - 772323 + r 100 -11.4 -4.29829 | opp_overlap 772300 ATATCCCCAGGGAAT TTCTCCAACA GGC TGTTGGAGGA TTTGTTCATCGTTAT RMA_0772 773104 - 772610 - | hypothetical protein TERM 728 774451 - 774419 - R 76 -3.6 -5.48825 | opp_overlap 774423 774448, overlap 774423 GAGGATCCAAAAAAA TAAACCTATAAAAA CAAAT TTTTTGTAGGTTTT ACTGGATTCCCGCTT TERM 729 774423 - 774447 + r 74 -6.6 -4.30978 | opp_overlap 774423 774419 ATCCAAAAAAATAAA CCTATAAAAA CAAAT TTTTTGTAGG TTTTACTGGATTCCC TERM 730 774447 - 774423 - R 77 -4.4 -5.21683 | opp_overlap 774423, overlap 774419 ATCCAAAAAAATAAA CCTATAAAAA CAAAT TTTTTGTAGG TTTTACTGGATTCCC glmU 775294 - 774548 - | UDP-N-acetylglucosamine pyrophosphorylase TERM 731 774989 - 775007 + g 71 -3.2 -5.1963 | AGGATGATCAGCGTA TAAAACTA ATA TTGTTTTA TTTTTATTAATTAAA RMA_0775 776217 - 775291 - | hypothetical protein TERM 732 775716 - 775729 + g 79 -4.5 -5.21236 | overlap 775709 AACTAGAGCGTACTT CTGCA GCAG TGCGG TTTTTATTATCGGTT rpmJ 776388 - 776263 - | 50S ribosomal protein L36 RMA_0778 776909 - 777658 + | hypothetical protein TERM 733 777862 - 777827 - g 74 -6.5 -4.30978 | gap 1, opp_overlap 777838, overlap 777838 GGCAATCCAGCAAAA CAATAAAAAAATTCTG TAAAT CAGAATTTT-TTACTG GACTGCTTCGTCAAT TERM 734 777838 - 777852 + G 76 -4.3 -5.15634 | opp_overlap 777827 777838 AAAACAATAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGACTG TERM 735 777852 - 777838 - g 93 -4.3 -6.04419 | opp_overlap 777838, overlap 777827 AAAACAATAAAAAAA TTCTG TAAAT CAGAA TTTTTTACTGGACTG mltE2 777760 - 778602 + | soluble lytic murein transglycosylase and related regulatory protein RMA_0780 778586 - 779092 + | hypothetical protein TERM 736 779680 - 779668 - g 74 -3.3 -5.24799 | GCACAAAGACAAAAA CCGTT GTA ATCGG CATGATAGAGAGAAA RMA_0781 779409 - 779918 + | transposase TERM 737 780218 - 780204 - f 70 -7.2 -3.64682 | overlap 780196 GACGAAATCCCTAAA CCATTT ATA AAATGG GCAGGGGAAAAAGAA TERM 738 780570 - 780542 - f 74 -6.1 -4.41241 | opp_overlap 780541 780542 TAAAGCTTTACAAAA TGCTGAAATAATA TAT TAGGATTTCAGCA ATATTTCGCCTAAGC TERM 739 781309 - 781299 - f 72 -2.6 -5.48028 | opp_overlap 781305 TAAATAAAAAGAAAA TATA GGT TATA TAAGTATATAATTCC RMA_0785 781799 - 782620 + | hypothetical protein lpdA2 782776 - 784155 + | dihydrolipoamide dehydrogenase TERM 740 784353 - 784323 - f 84 -10.8 -3.14218 | opp_overlap 784330, overlap 784330 TATCCAGTAAAACCA CTAAAAATACTAAT AAT ATTAGTATTTTTAA CTAGATCCCACAACA TERM 741 784346 - 784330 - f 83 -6.7 -4.86773 | opp_overlap 784330, overlap 784323 TAAAACCACTAAAAA TACTAAT AAT ATTAGTA TTTTTAACTAGATCC TERM 742 784330 - 784346 + F 79 -6.7 -4.67353 | opp_overlap 784330 784323 TAAAACCACTAAAAA TACTAAT AAT ATTAGTA TTTTTAACTAGATCC RMA_0787 784403 - 784972 + | 5-formyltetrahydrofolate cyclo-ligase rnd 786219 - 785365 - | ribonuclease D RMA_0789 787056 - 786220 - | hypothetical protein TERM 743 787676 - 787655 - g 87 -6.5 -5.43514 | overlap 787657 AAAATAATTAAAAAA GACTGGACC CCGT GGTCAAGCC ACGGGGTGACAGAGG TERM 744 787688 - 787657 - g 100 -10.9 -4.30543 | gap 1, overlap 787655 AATAATTAAAAAAGA CTG-GACCCCGTGG TCAAG CCACGGGGTGACAG AGGGGGCACCGCCCC TERM 745 787704 - 787690 - g 86 -12.8 -2.87564 | CCACGGGGTGACAGA GGGGGC ACC GCCCCC CTCAACAACATCTCC RMA_0790 787115 - 788131 + | putative aminomethyltransferase RMA_0791 788761 - 789423 + | ankyrin repeat-containing protein TERM 746 792222 - 792254 + F 100 -15.3 -4.12188 | opp_overlap 792229 792232, overlap 792229 ATTTTGTATCTGATA TTGAAAAGAATATAA TAA TTATATTCTTTTCAA TTTTAACCGTGATCC TERM 747 792247 - 792229 - f 80 -7.6 -4.23758 | opp_overlap 792229 792222, overlap 792232 ATCTGATATTGAAAA GAATATAA TAA TTATATTC TTTTCAATTTTAACC TERM 748 792229 - 792247 + F 82 -7.6 -4.4267 | opp_overlap 792229 792232, overlap 792222 ATCTGATATTGAAAA GAATATAA TAA TTATATTC TTTTCAATTTTAACC TERM 749 792641 - 792671 + F 100 -22.8 -3.78934 | opp_overlap 792630 TCCAGTACTTTTTGC TGTCATACCGTGGC TCC GCCACGGTATGACA TTATTATGAAAAAAA TERM 750 792699 - 792687 - g 77 -3.5 -5.55664 | TTATTATGAAAAAAA TTATT TTT AATAA ACAACGAGATTTTAT TERM 751 793303 - 793335 + G 76 -7.7 -4.08216 | opp_overlap 793303 793302 793323 TCATCCCTGTGAAAG CGGGAATCCAGAA AAAATAA TACTGGATCCCCG TTTTCACAGGGATGA TERM 752 793335 - 793303 - g 75 -9.9 -2.72144 | opp_overlap 793303, overlap 793302 793323 TCATCCCTGTGAAAG CGGGAATCCAGAA AAAATAA TACTGGATCCCCG TTTTCACAGGGATGA mccF2 792650 - 793666 + | microcin C7 resistance protein TERM 753 794671 - 794660 - g 76 -4.4 -5.1244 | CTACCAATATAAAAA CTTC AACA GAAG CAGGCATAAAAGCCG hemC 793663 - 794718 + | porphobilinogen deaminase trpS 797618 - 796626 - | tryptophanyl-tRNA synthetase TERM 754 797769 - 797786 + G 70 -4.2 -4.70659 | ATTTTTTTTCTTATA TGTTAC ATACCC GTAACA TTTTTCAATGTCAAC plsC 797697 - 798422 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase RMA_0805 798475 - 798927 + | AtsE-like protein TERM 755 798973 - 798997 + F 70 -4.4 -4.7878 | opp_overlap 798973 GGGAATCCAGTAAAA CCTATAAAAA ACTTG TTTTTTTAGG TTTATTTTGTCAATA RMA_0806 799486 - 800211 + | alpha/beta family hydrolase TERM 756 800328 - 800342 + T 95 -4.3 -6.25741 | opp_overlap 800328 CAATCCAGTTAAAAA TTCTG TAAAT CAGAA TTTTTTTTATTATTT RMA_0809 802213 - 801446 - | hypothetical protein TERM 757 801517 - 801532 + g 81 -7.6 -4.41309 | TTAGATAGTTTAAGT GCTCTA AAAT TAGAGC TTTATCTTGTTCTTT RMA_0810 802919 - 802191 - | hypothetical protein lysE 803487 - 802846 - | lysine efflux permease TERM 758 803018 - 803002 - GR 71 -2.3 -5.37593 | overlap 803003 803005 TGCTAAAGCAAAAAA CCATATC CAA GATATAA GTATGCAAGTTAAGG TERM 759 803136 - 803148 + gr 77 -4.9 -5.08824 | TTGATACCGATATAG CAAAT AAA ATTTG TTTTTTAGCTGAAAA ampG1 805310 - 803895 - | AmpG TERM 760 805593 - 805577 - H 71 -5.2 -4.61147 | opp_overlap 805575 805572 CAAGAGTACACAAAA GGAAAT TTTTT ATTTCC TGTCGCTTTCCTATG TERM 761 806706 - 806718 + G 74 -2 -5.40014 | CTACATTATAGTCGG TAGT TTTTT ACTA TTTTTCTTATTATTT TERM 762 807150 - 807171 + G 70 -4.6 -4.65263 | AATAATTGCTATGCT TCTATTTA GAATAA TAAATAGA TTTATTTTAACAGAT TERM 763 807254 - 807238 - g 70 -2.3 -5.24291 | opp_overlap 807248 AAAATGAAAACAAAA CTTTC GGTAATT GAAAG TATCAAATTAGTAAT tlc3 806395 - 807921 + | ATP/ADP translocase RMA_0817 807941 - 809689 + | hypothetical protein TERM 764 810729 - 810717 - g 73 -4.1 -4.9448 | AGTTATTAAATAAAA TTCCG GTT CAGAA TATTTATAAAGACTA ispB 809696 - 810787 + | octaprenyl-diphosphate synthase pepP 813110 - 811080 - | aminopeptidase P TERM 765 811580 - 811590 + g 83 -6.8 -4.93898 | GTCCTTTAAGTACTT GCGT ATA ACGC TTTTTCTGCTCATCT TERM 766 812199 - 812213 + g 73 -7 -3.9163 | overlap 812168 812164 812205 ACGTACGCTTGTGTA CGCTGC GGT GCTGCG TTTCGTATCTCCTTT TERM 767 812781 - 812771 - G 74 -5.4 -4.74103 | CTTTTAAGTCAAAAA GCTT AAA AAGC TCTAAATCCAGCTCT TERM 768 813111 - 813141 + r 80 -7.1 -4.73105 | opp_overlap 813119, overlap 813119 GACGAAGCAATCCAG TTAAAAAATTCTG ATTTA CAGAATTTTTTTA TTATTTTTTCTGGAT TERM 769 813133 - 813119 - R 73 -4.3 -5.10497 | opp_overlap 813111 813119 AATCCAGTTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 770 813119 - 813133 + r 91 -4.3 -6.04419 | opp_overlap 813119, overlap 813111 AATCCAGTTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT potE 814502 - 813213 - | putrescine-ornithine antiporter TERM 771 814357 - 814340 - G 82 -8.5 -4.02581 | GGGTAGAAAATACAA GTGCTAT ACTC ATAGCAC CGAATAATGAAAGTA TERM 772 814526 - 814507 - R 71 -8 -3.23235 | overlap 814503 814502 814517 GACATATTAATCTAA TTTAAAGC AACA GCTTTAAA ATAGCTGAAATAATG iscA2 815972 - 815619 - | Iron-sulfur cluster assembly accessory protein TERM 773 815912 - 815924 + g 76 -6.3 -4.5287 | overlap 815921 TAGGCTTGGCACGTT TTGCT ATT AGCAA TTTTACTTGCTTTGC iscU 816377 - 815976 - | scaffold protein TERM 774 816511 - 816484 - R 77 -9.2 -3.24365 | gap 1, overlap 816482 GGATATTTGACAAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATATTCTCAA iscS 817755 - 816523 - | cysteine desulfurase IscS TERM 775 817841 - 817792 - R 77 -8.8 -3.63627 | gap 2, overlap 817794 817795 TTGGTATAGTTTAAA CAG-TC-ATCGATGTCATTCCCGC GGAA GCGGGAATGACATAAACGGAGCCG TGCAACAACGTCGCT TERM 776 817837 - 817794 - R 80 -9.6 -3.39844 | overlap 817792 817795 GGTATAGTTTAAACA GTCATCGATGTCATTCCCGC GGAA GCGGGAATGACATAAACGGA GCCGTGCAACAACGT TERM 777 817836 - 817795 - R 100 -13.1 -2.63585 | overlap 817794 817792 GTATAGTTTAAACAG TCATCGATGTCATTCCCGC GGAA GCGGGAATGACATAAACGG AGCCGTGCAACAACG spl1 818976 - 817858 - | NifS-like protein TERM 778 818282 - 818301 + g 70 -4.3 -4.7373 | ATTGCTAAAACATTT TCAGTGC CTGAGC GTACTGA TTTTTCCTGCCCTCC iscR 819392 - 818973 - | Iron-sulfur cluster assembly transcription factor IscR RMA_0829 822317 - 821430 - | hypothetical protein TERM 779 822438 - 822459 + H 75 -8.1 -3.61103 | overlap 822439 GTATTTTTTCTATTT TTTTGACCA AGTT TGGTCAAAG TTTAGAATAAAATTC TERM 780 822439 - 822458 + H 74 -9.4 -2.7634 | overlap 822438 TATTTTTTCTATTTT TTTGACCA AGTT TGGTCAAA GTTTAGAATAAAATT TERM 781 823909 - 823923 + H 72 -5 -4.79955 | CTTTTTGTATTGTTC CACTAG CTT TTAGTG TTTTATTGTGGCTAT TERM 782 823986 - 824006 + H 82 -7.7 -4.7153 | overlap 824005 TATTTGCCCCGGCAT CTAGTAATT TAA AATTACTGG TTTTTAACCTTATTT TERM 783 825047 - 825063 + H 77 -8.1 -3.80466 | opp_overlap 825047 825046, overlap 825045 ACTATCTTAACTAAG CTTTTAG TAA CTAAAAG TATTTGTTGTATAAT TERM 784 825188 - 825201 + H 72 -2.5 -5.49809 | TAATACCTTTTTATT TAATA ACGG TATTA TTTTTTTAAGCTTTC TERM 785 825384 - 825396 + H 86 -4.1 -5.86976 | TAACTGTTTTAAATT CTTGA GGC TCAGG TTTTTTGTTTTGTAA TERM 786 827716 - 827703 - g 76 -3.9 -5.28942 | opp_overlap 827703 827709 827715, overlap 827709 GATCCCAAATAAAAA TAGAA TTAT TTCTA ATATTATTATTTTAC TERM 787 828766 - 828778 + G 83 -6.3 -5.00616 | overlap 828752 CTTACAGGATTTTTC GGTAA ATA TTACC TTTTTTACCAAGCAA nuoN1 827620 - 828996 + | NADH dehydrogenase subunit N RMA_0835 830527 - 828983 - | hypothetical protein TERM 788 829045 - 829055 + g 79 -5.4 -5.13343 | CAGTAGTTTTAGTAG GCTT CCT AAGC TTTTCTTTTAGATTC TERM 789 829422 - 829432 + g 70 -4 -4.95806 | GTAGTAATTTTATTT CTTA ATT TAAG TTTTTGTCCTCCTTT TERM 790 830157 - 830178 + g 93 -10.3 -4.08394 | opp_overlap 830162, overlap 830162 CTACCGCCGTCCTTT CTAAACCAA GAAC TTGGTTTAG TTTTAGCAGACATAT hemB 831623 - 830622 - | delta-aminolevulinic acid dehydratase RMA_0837 831788 - 832834 + | hypothetical protein priA 834777 - 832831 - | primosome assembly protein PriA TERM 791 833783 - 833797 + g 71 -8.6 -3.07816 | AAATTACCTTTGATA GCTTCT ATA AGAAGC TTGGATAAATAGGAA TERM 792 834877 - 834854 - g 72 -4.7 -4.71791 | AGATGAATAAAGAAA CAAAAATTG TTATAG CAATTTCTG GAGCTTCAGGGGCAA TERM 793 835284 - 835298 + G 88 -7 -4.91109 | CGGCGGCATTATATC GCCGCC CGT GCCGGC TTTTTATAATAACCC ubiX 834841 - 835416 + | aromatic acid decarboxylase TERM 794 835657 - 835643 - f 70 -4.3 -4.77157 | opp_overlap 835643 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCATTCT TERM 795 835643 - 835657 + F 87 -4.3 -5.73339 | opp_overlap 835643 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCATTCT dnaB 835795 - 837282 + | replicative DNA helicase TERM 796 837353 - 837380 + F 100 -14.3 -3.23598 | overlap 837357 ACGTTAGTGAGCATG GCAATCTCAGG CATTTT CCTGAGATTGC TTCGTCAGTTACTTC TERM 797 837357 - 837376 + F 71 -7.9 -3.41581 | overlap 837353 TAGTGAGCATGGCAA TCTCAGG CATTTT CCTGAGA TTGCTTCGTCAGTTA TERM 798 837571 - 837557 - f 74 -5.8 -4.6635 | AAACCGGTAATAAAA TTGTAA TAA TTACAA GAATCATACCAGCAA TERM 799 838524 - 838548 + F 79 -10.1 -2.87564 | opp_overlap 838522 838519 TTTGCTAATACCATG GGTAGTGCTAT ATC ATACCACTACC TATATACACAAGTAC TERM 800 838763 - 838791 + F 74 -7.8 -3.81256 | opp_overlap 838757 838760 838763 838765 838769 GTATAGTAATAATTA TATTAATAATTT ATATA AAATTATTAATA TTGCTTTTTAAGGGT rluA2 838994 - 839683 + | ribosomal large subunit pseudouridine synthase TERM 801 840729 - 840718 - g 82 -3 -5.75822 | opp_overlap 840718 TAGAAAGCAAAAAAA TCTT TCAG AAGA TTTAAATATAGTTCC TERM 802 840922 - 840908 - g 71 -8.6 -3.04398 | overlap 840907 GCCGTTTTTCAAAAT GTTACG GCT CGTAAC GCAGGATTTCTTTTT TERM 803 841599 - 841588 - g 70 -4.4 -4.67234 | AGCTAACTTTAAAAA TGCA ATTA TGCA GCGTGCCGATCTTAC TERM 804 842545 - 842531 - g 82 -8.6 -3.9344 | overlap 842540 AAGCCTAACACTAAA GGCAAA GGA TTTGCC ACAAAAATAAAAGAC RMA_0846 839705 - 842599 + | hypothetical protein RMA_0847 842604 - 843401 + | N6-adenine-specific methylase TERM 805 844579 - 844568 - gf 76 -3.6 -5.38549 | GTGAAATAAGAAAAA CCGC AAAA GCAG AAACAAGAATAAAAG radA 843373 - 844707 + | DNA repair protein RadA RMA_0849 844704 - 845018 + | hypothetical protein TERM 806 845068 - 845054 - f 79 -2.8 -5.73672 | opp_overlap 845054 845055, overlap 845055 AAATAATTAAAAAAA TGCTAA AAA TGAGCA TTTTTAACTGGATTG recO 845076 - 845900 + | DNA repair protein RecO RMA_0851 846320 - 847012 + | putative glycoprotein endopeptidase TERM 807 847029 - 847018 - T 71 -2.2 -5.47218 | opp_overlap 847021 847025, overlap 847021 TCCTAGTTAAAAAAA GTAG GAAT CCAC TTACTGGATTTCTGT RMA_0852 848382 - 847072 - | hypothetical protein TERM 808 847636 - 847582 - G 76 -9.8 -2.92463 | opp_overlap 847582, overlap 847605 847635 GGTAGTATCTATATA TGTATTTAATTTATCTAATGGAATAA ATT TCATTAATTTAGATAAATTAAATACA TTTTCAAAATGCTCC TERM 809 847582 - 847636 + g 78 -7.6 -4.12188 | opp_overlap 847582 847605 847635 GGTAGTATCTATATA TGTATTTAATTTATCTAATGGAATAA ATT TCATTAATTTAGATAAATTAAATACA TTTTCAAAATGCTCC infB 851251 - 848756 - | translation initiation factor IF-2 TERM 810 849361 - 849339 - G 71 -8.6 -3.03243 | opp_overlap 849339 849342 ACCGACCCTTGAACA TCACCTTTAA TAA TTAAAGGTAA TTCCTTAATTTTACT TERM 811 850367 - 850379 + g 79 -9.1 -3.35723 | overlap 850365 TGTTGCAACTAGTTC TGCCG TAT CGGCA TCTATTGTTTGGCTA nusA 853001 - 851490 - | transcription elongation factor NusA TERM 812 853015 - 853026 + r 73 -4.4 -5.12617 | ATACATTATCTCTTA TTGC TTTA GCAA TTTTTTAAATACTTC RMA_0855 853506 - 853012 - | hypothetical protein TERM 813 853536 - 853520 - R 100 -9.4 -5.56673 | opp_overlap 853517 853520 ATTTATAACAAAAAA GGTGGG ATAAA CCCACC TAATCTATAATTTTT TERM 814 853520 - 853536 + r 74 -9.4 -2.76198 | opp_overlap 853520, overlap 853517 ATTTATAACAAAAAA GGTGGG ATAAA CCCACC TAATCTATAATTTTT RMA_0856 854641 - 853850 - | hypothetical protein TERM 815 855220 - 855210 - R 74 -4 -5.1764 | GATATAATAGAAAAA TTAG AAC CTAA TATGGATATAGTAGA tlyA 856163 - 855390 - | hemolysin A TERM 816 856247 - 856201 - R 74 -7.6 -3.92276 | opp_overlap 856201 856204 856206 856208, overlap 856199 856206 ATGAGATAGAAAATA TACAATTTGTCTAATTGAAAGT TGC AGTTTCAATTAGACATAATATA TTTGAGCCATACAAT TERM 817 856206 - 856243 + r 71 -8.1 -3.24708 | gap 1, opp_overlap 856206 856201 856199, overlap 856204 856201 856208 ATAGAAAATATACAA TT-TGTCTAATTGAAAGT TGC AGTTTCAATTAGACATAA TATATTTGAGCCATA TERM 818 856242 - 856206 - R 83 -9.7 -3.87562 | opp_overlap 856204 856201 856206 856208, overlap 856201 856199 ATAGAAAATATACAA TTTGTCTAATTGAAAGT TGC AGTTTCAATTAGACATA ATATATTTGAGCCAT TERM 819 856208 - 856240 + r 90 -12.3 -2.80821 | opp_overlap 856206 856201 856199, overlap 856206 856204 856201 AGAAAATATACAATT TGTCTAATTGAAAGT TGC AGTTTCAATTAGACA TAATATATTTGAGCC tyrS 857539 - 856304 - | tyrosyl-tRNA synthetase RMA_0861 857827 - 857543 - | hypothetical protein RMA_0862 858120 - 857830 - | hypothetical protein RMA_0863 858623 - 858315 - | hypothetical protein RMA_0864 859298 - 859831 + | hypothetical protein TERM 820 861847 - 861861 + T 74 -5.8 -4.65838 | overlap 861851 TTTTATCTACACCGT GAATTT GAA AAATTC TTTTTGCAATATCTA TERM 821 864059 - 864069 + T 74 -4 -5.28481 | ACCTCATCAAAGTTG CTTA CTT TAAG TTTTTTACTTAACTG RMA_0869 864560 - 864078 - | hypothetical protein RMA_0870 864906 - 864625 - | hypothetical protein RMA_0872 865920 - 865492 - | hypothetical protein TERM 822 870449 - 870437 - g 74 -5.5 -4.8048 | GTTTTATAGTAAAAA CCGAT AAA ACCGG AACGCATCATATCTT TERM 823 870959 - 870975 + G 75 -8.1 -3.86252 | ATGATTCCTTAACCG GCTTATA CAA TATAAGC TTATATTTAGTAGGA TERM 824 873922 - 873887 - g 71 -8.6 -3.0752 | opp_overlap 873914, overlap 873892 873913 873917 TAGATGAGGCTAATA TTAAAGTAACCTCT ACAGATAA AGAAGTTACTTTAA CAGGCGATAAAGTGA RMA_0876 868792 - 874476 + | large extracellular alpha-helical protein TERM 825 874577 - 874601 + T 70 -4.4 -4.7878 | opp_overlap 874577 GGGAATCCAGTAAAA CCTACAAAAA ACTTG TTTTTTTAGG TTTATTTTGTCAATA comF2 877334 - 876975 - | competence protein F TERM 826 878663 - 878643 - R 71 -8.9 -2.52234 | overlap 878642 AGAAAGTGCAGCAAG CCCAACCCC AAC GGGAGTGGG ATTAAGGACTAATGA ubiH 880712 - 879417 - | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 827 880617 - 880631 + gr 70 -7 -3.83998 | overlap 880594 ACGTACGCTTGTGTA CGCTGC GGT GCTGCG TTTCGTGTCCCCTAC RMA_0887 881019 - 880684 - | putative monovalent cation/H+ antiporter subunit F ntrX 881489 - 882925 + | nitrogen assimilation regulatory protein NtrX RMA_0889 882894 - 884663 + | hypothetical protein TERM 828 884798 - 884777 - T 80 -7.5 -4.30978 | opp_overlap 884776 884773 884777 GGGAATCCAGTAAAA CATATAAAA AATT TTTTATATG CTTATTTTGTTAAAG RMA_0890 885885 - 884881 - | hypothetical protein TERM 829 886138 - 886122 - R 79 -6.7 -4.66609 | opp_overlap 886122 886116 886112 GAGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTAAGTTGTTTTC TERM 830 886122 - 886138 + r 78 -6.7 -4.41817 | opp_overlap 886122, overlap 886116 886112 GAGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTAAGTTGTTTTC pbpA1 888313 - 886517 - | penicillin-binding protein TERM 831 887596 - 887613 + gr 71 -6.3 -4.22009 | TATCTTCACCCGATT TAGTAGG GATT CCTGCTA TTTCTCTTACCTGCT RMA_0892 888815 - 888288 - | hypothetical protein TERM 832 889325 - 889369 + r 79 -8 -4.13014 | gap 1, overlap 889326 889328 TTTTTGTTGCACAGA TC-GTTTTATGTCATTCCCGC ATAG GCGGGGATGACATCAAGTAGG TTTTACCGATCTACG TERM 833 889326 - 889368 + r 74 -9.3 -3.07487 | gap 1, overlap 889325 889328 TTTTGTTGCACAGAT C-GTTTTATGTCATTCCCGC ATAG GCGGGGATGACATCAAGTAG GTTTTACCGATCTAC TERM 834 889328 - 889365 + r 100 -14.3 -2.75081 | overlap 889326 889325 TTGTTGCACAGATCG TTTTATGTCATTCCCGC ATAG GCGGGGATGACATCAAG TAGGTTTTACCGATC pbpA2 891119 - 889434 - | penicillin-binding protein ftsL 891864 - 891463 - | cell division protein FtsL mraW 892791 - 891868 - | S-adenosyl-methyltransferase MraW mraZ 893297 - 892791 - | cell division protein MraZ TERM 835 893411 - 893384 - H 78 -5.8 -4.8236 | opp_overlap 893383 893391, overlap 893386 TATCCAAAAAAATAA TTTAAAATACTA ATAT TAGTATTTTAGA ATGGATTCCGCGATC TERM 836 894167 - 894155 - H 82 -4.9 -5.38047 | CATCGAGATAAAAAA CTAAT AGA ATTAG TACCCGATGATAAAC TERM 837 894801 - 894813 + H 73 -7.7 -3.65714 | opp_overlap 894800 894801 ATATTGTAAACAAAT GCTCA GTT TGAGC TTTAAAATCTAATTT panF 894829 - 896226 + | Sodium/pantothenate symporter RMA_0900 896288 - 896611 + | hypothetical protein uvrC 898743 - 896854 - | excinuclease ABC subunit C TERM 838 896944 - 896982 + g 71 -3.3 -5.055 | gap 2, overlap 896947 ATCTATGGTCGCGTC GCA-TACTGCTTTA-TACG AAC CGAAATAATGCAGTAATGC TTTTTTACGAGTTGC TERM 839 898437 - 898427 - G 71 -5.4 -4.62054 | TTAATGAAAGGAAAA GACT TGT AGTC CTTAAGAAGAATATT TERM 840 898685 - 898668 - G 76 -7.7 -3.93673 | CAAACATCCGATAAA CCCCTGA ACGT TCAGGAG CATCTATAAGTTTAG RMA_0902 899453 - 898911 - | hypothetical protein RMA_0903 900277 - 899639 - | putative DNA alkylation repair protein TERM 841 901595 - 901623 + r 70 -4.6 -4.74103 | gap 1, overlap 901599 901600 AAGCTATTATTGTTT TGTTAGTGCCGAG TTCA CTTGGCAC-ATCA TTTTTAAATTCAACG TERM 842 901600 - 901619 + r 77 -10 -2.56432 | overlap 901599 901595 ATTATTGTTTTGTTA GTGCCGAG TTCA CTTGGCAC ATCATTTTTAAATTC TERM 843 902483 - 902505 + r 71 -2 -5.38398 | overlap 902487 TTCTTCGATATTTGC TCGATGAGAA TAT TTTTCAATGA TTTTTCTATTTTTAT RMA_0908 904856 - 904647 - | hypothetical protein TERM 844 905069 - 905042 - R 77 -9.2 -3.23393 | gap 1, overlap 905040 TGTTATTGCATAAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTTGGTATC TERM 845 905839 - 905849 + r 70 -4 -4.97666 | opp_overlap 905839, overlap 905831 AACAGAGTTAAATTA CTAT TTA ATAG TTTTTATCATATCTT secA 909358 - 906623 - | preprotein translocase subunit SecA TERM 846 908493 - 908503 + g 84 -8.2 -4.60713 | opp_overlap 908493, overlap 908482 TCAAAATCATATAAA CCGG TAT CCGG TTTTATAATATTTTC TERM 847 908503 - 908493 - G 81 -8.2 -4.20797 | opp_overlap 908482 908493 TCAAAATCATATAAA CCGG TAT CCGG TTTTATAATATTTTC TERM 848 909660 - 909648 - g 73 -7.7 -3.89695 | TGCTGATAAAGACAA GGTAG TTG CTACC TATAAAGGCGGTGAA prsA 909577 - 910425 + | protein export protein prsA precursor acpS 911028 - 910633 - | 4'-phosphopantetheinyl transferase TERM 849 911041 - 911016 - G 91 -12.7 -3.24188 | opp_overlap 911018 CTATATCAGTACCAA CACCGATAAGC ATTT ACTTATCGGTG TCATAATCTTCGCCA rpoZ 911517 - 911029 - | DNA-directed RNA polymerase subunit omega murA 912842 - 911583 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 850 912927 - 912954 + r 83 -8 -4.33182 | opp_overlap 912934, overlap 912924 912928 912934 AATCGCGGGATCCAG TTAAAAATACTA ATAT TAGTATTTTTAG TTATTTTCTGGATAC TERM 851 912928 - 912953 + r 77 -9.3 -3.19186 | opp_overlap 912934, overlap 912927 912924 912934 ATCGCGGGATCCAGT TAAAAATACTA ATAT TAGTATTTTTA GTTATTTTCTGGATA TERM 852 912934 - 912947 + r 70 -3.9 -5.07971 | opp_overlap 912934, overlap 912928 912927 912924 GGATCCAGTTAAAAA TACTA ATAT TAGTA TTTTTAGTTATTTTC gyrB 915428 - 913002 - | DNA gyrase subunit B TERM 853 914460 - 914477 + g 83 -4.9 -5.52023 | CCTAGTATCGTCACC GCTAAAG TCAT TTTTAGC TTTTTTATTAGTAGT TERM 854 915185 - 915198 + g 85 -6.7 -5.37171 | overlap 915172 GCCCGTTATCGGATA CGGTT ACTG AACCG TTTTTATTTAATGTT RMA_0918 915581 - 916549 + | HAD family hydrolase TERM 855 917843 - 917819 - g 87 -11.7 -3.16881 | opp_overlap 917826, overlap 917826 TAGGTAGCGTATCAA TCGATAATATA ATT TATATTATCGA AGAACAAGCCGGCAA TERM 856 918169 - 918155 - g 74 -5.6 -4.75288 | opp_overlap 918157, overlap 918157 TTATATTAAAAGAAA TAGCCG TAT CGGCTT TTAACGGTTTTGTAC TERM 857 918157 - 918167 + G 81 -8.2 -4.19879 | opp_overlap 918155 918157 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT TERM 858 918167 - 918157 - g 79 -8.2 -3.98052 | opp_overlap 918157, overlap 918155 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT mgtE 917056 - 918426 + | magnesium transporter TERM 859 919047 - 919061 + T 74 -4.2 -5.30155 | overlap 919048 AATTATCAACTTTTT CTAGGC AAT GCCTAA TTTTTTAATTAATAG TERM 860 919048 - 919060 + T 74 -7.7 -3.77008 | overlap 919047 ATTATCAACTTTTTC TAGGC AAT GCCTA ATTTTTTAATTAATA TERM 861 919611 - 919643 + T 70 -6.5 -4.28994 | opp_overlap 919611 CACCTGAGAAAGCTA GAAAAATTGTTGAAG AGA CTTTAATAAATTTTC TTTTGGTCGCTGCTA proP9 920010 - 919666 - | proline/betaine transporter TERM 862 921541 - 921585 + r 85 -8 -4.59773 | gap 1, overlap 921542 921543 CTCCAGTGATTTGTT C-CGTTTTATGTCATTCCCAC GTAG GCGGGAATGACATAGAGCATG TTTTTCGAGCTAAGC TERM 863 921542 - 921583 + r 100 -11.7 -3.91506 | overlap 921541 921543 TCCAGTGATTTGTTC CGTTTTATGTCATTCCCAC GTAG GCGGGAATGACATAGAGCA TGTTTTTCGAGCTAA TERM 864 921543 - 921582 + r 100 -15.2 -2.94422 | overlap 921542 921541 CCAGTGATTTGTTCC GTTTTATGTCATTCCCAC GTAG GCGGGAATGACATAGAGC ATGTTTTTCGAGCTA RMA_0924 921875 - 921645 - | putative antitoxin of toxin-antitoxin TERM 865 922043 - 922023 - H 74 -8.9 -3.05647 | TTTTAAGGACACACA GCACGCAGC ACC GCAGCGTAC AAAAAGGTACGTGAG TERM 866 922375 - 922393 + G 73 -4.6 -4.91573 | TCAGGGTTAACAAGC TTAATACC GAT GGTTTTAA TTTTTGCTGTATTTT yajC 922192 - 922692 + | preprotein translocase subunit YajC secD 922676 - 924232 + | preprotein translocase subunit SecD TERM 867 924515 - 924501 - g 73 -4.4 -4.89393 | CAAATGTTATAAAAA TAATTA TCG TAATTA GCTTATTAATAGGAG TERM 868 924796 - 924786 - g 70 -4 -4.93454 | TAAATAAACATAAAA TAGA TAT TCTA CCTGTTTTTATCACT RMA_0927 924458 - 925090 + | Sco2 protein precursor RMA_0928 925083 - 925214 + | hypothetical protein ccmE 925177 - 925578 + | cytochrome c-type biogenesis protein CcmE TERM 869 925980 - 925967 - g 70 -8.1 -3.2241 | opp_overlap 925966 925964 925967, overlap 925966 GATCGGTTATAAAAT GCCGA GCAG TCGGC GTATTGATGATGGAA ppa 925696 - 926229 + | inorganic pyrophosphatase TERM 870 926289 - 926272 - f 86 -11.3 -2.62184 | TGGTGCTTGATATCA TTCCCGC GGAG GCGGGAA TCCAGAAAAAGTAGC TERM 871 926372 - 926349 - f 100 -9.8 -4.91657 | opp_overlap 926349 AATTAACAAAATAAA CCTATAAAAA CAAG TTTTTATAGG TTTTACTGGATTCCC TERM 872 926349 - 926372 + F 90 -9.8 -4.30978 | opp_overlap 926349 AATTAACAAAATAAA CCTATAAAAA CAAG TTTTTATAGG TTTTACTGGATTCCC TERM 873 927883 - 927869 - g 74 -5.7 -4.66746 | TACAAAACAAAATAA GCTTC ATATA GAAGC CGGTATAAAACTTTT TERM 874 927944 - 927958 + G 75 -7.2 -4.09628 | opp_overlap 927944 927943, overlap 927949 AATGTCTATTATAAT TGCTTT AAT AAAGCA TTATTATTTAGAATA mviN 926433 - 928100 + | integral membrane protein MviN TERM 875 928149 - 928165 + G 72 -9.5 -2.75389 | opp_overlap 928147 TTTAGCTATTATAGC CATGATC ATT GATCATG TAGGTTTATATCTAT TERM 876 928554 - 928570 + G 83 -5.9 -5.04356 | opp_overlap 928554, overlap 928540 928567 GGCAAACTTAAAACT TTGCTGT TTT ATAGCAA TTTTTGCTTCTTTCG traX 928078 - 928833 + | F pilin acetylation protein TraX RMA_0933 928871 - 929509 + | hypothetical protein recG 931865 - 929724 - | ATP-dependent DNA helicase RecG TERM 877 932017 - 932032 + H 81 -4.6 -5.33866 | opp_overlap 932017 932012 TTTTTAAAATTAAAA GCTCGA TGTA TCGCGC TTTTTTCTGGATTTC TERM 878 932443 - 932429 - H 70 -4.3 -4.92757 | TTATCAACAACAAAA TGGTT AACTA AACCA CGCTCTAAACCGTAT TERM 879 933741 - 933721 - g 72 -4.7 -4.79352 | TGATTTACAATAAAA CTGCACGAA ATT TTAATGCAG TCATGGCAGGTGCCG scoA 933321 - 933962 + | succinyl-CoA:3-ketoacid-coenzyme A transferase scoB 934019 - 934549 + | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B TERM 880 935250 - 935226 - T 70 -4.4 -4.79683 | opp_overlap 935226 AATTGATAAAATAAA CCTAAAAAAA CAAGT TTTTTATAGG CTTTACTGGCTTCCC TERM 881 935257 - 935283 + T 79 -7.3 -4.38927 | gap 1, opp_overlap 935282, overlap 935282 TTTTATAGGCTTTAC TGGC-TTCCCGC TTCC GCGGGAATGACA TTTATTATCTAACAA rickA 936886 - 935288 - | Actin polymerization protein RickA mraY1 938107 - 936998 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 939635 - 938286 - | UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase TERM 882 939732 - 939697 - R 82 -10.8 -2.52896 | opp_overlap 939698 939702, overlap 939702 GTAGGCGGGAAGCCA GTAAACATATAAAAAG CTTG CTTTTTATATGTTTAT TTTATCAAATATGTA TERM 883 939698 - 939731 + r 100 -14.3 -4.4195 | opp_overlap 939697 939702, overlap 939702 TAGGCGGGAAGCCAG TAAACATATAAAAAG CTTG CTTTTTATATGTTTA TTTTATCAAATATGT TERM 884 939727 - 939702 - R 89 -10.7 -3.794 | opp_overlap 939698 939702, overlap 939697 CGGGAAGCCAGTAAA CATATAAAAAG CTTG CTTTTTATATG TTTATTTTATCAAAT TERM 885 939702 - 939727 + r 100 -10.7 -4.77775 | opp_overlap 939702 939697, overlap 939698 CGGGAAGCCAGTAAA CATATAAAAAG CTTG CTTTTTATATG TTTATTTTATCAAAT murE 941293 - 939839 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase mfd 944829 - 941425 - | transcription-repair coupling factor TERM 886 942887 - 942870 - G 80 -7.1 -4.57353 | GTTGACTACATAAAA TAGTTGT CGGT ACAACTA CGGCTACTTGAGGTA RMA_0946 945068 - 944805 - | TPR repeat-containing protein TERM 887 945034 - 945048 + g 86 -5.8 -5.41941 | opp_overlap 945033 945034 CTACGGTAGAAAAGT TTCTTT TGT AAAGAA TTTTTATTTAATTTA pspE 945232 - 945603 + | rhodanese-related sulfurtransferase TERM 888 946371 - 946387 + G 72 -5.9 -4.35885 | opp_overlap 946371 TACATTGATTGATAA TAACCGT CAA ATGGTTA TTTCTTGTGATAGAT dnaA 945604 - 946995 + | chromosomal replication initiation protein TERM 889 947895 - 947916 + F 78 -6.7 -4.48903 | opp_overlap 947894 TTGCATCATATATAT CTTTTCTTT TAGA AAAGGAAAG TTTTCATCTCTTTTG pat1 949291 - 950766 + | patatin-like phospholipase TERM 890 951458 - 951444 - T 72 -3.6 -5.1356 | overlap 951423 TTTTATCAATAAAAA TAAAAG GAG CTTCTA TGAAAAAACCGTAAT TERM 891 952475 - 952450 - T 75 -4.7 -4.95211 | opp_overlap 952451, overlap 952451 952462 AAAAAACTAATAAAA TGCTACTGTAA ACAC TTACAGTGGCT TGATGCAGCTCAAAA TERM 892 952451 - 952474 + T 83 -10.4 -3.15544 | opp_overlap 952450 952451 952462 AAAAACTAATAAAAT GCTACTGTAA ACAC TTACAGTGGC TTGATGCAGCTCAAA TERM 893 952474 - 952451 - T 73 -8.2 -3.53466 | opp_overlap 952451, overlap 952450 952462 AAAAACTAATAAAAT GCTACTGTAA ACAC TTACAGTGGC TTGATGCAGCTCAAA ychF 954202 - 953048 - | translation-associated GTPase TERM 894 953238 - 953221 - G 95 -12.7 -3.72592 | opp_overlap 953232 953234, overlap 953209 AATCGGTATGAATAA CACCGGC AGCA GCCGGTG CAAGTGTGCCGTCTT TERM 895 953315 - 953297 - G 74 -3.2 -5.21709 | opp_overlap 953297 953298, overlap 953298 TCCTATAGTAAAAAA GCTTTTAA GAT TTAAAAGA TTATACCCCTCTTTA TERM 896 953680 - 953695 + g 70 -4.6 -4.78149 | CTGCCATTGCTTTAT CGCCTG ACTT CAAGCG TTTTTCACTTGTAGC pth 955321 - 954758 - | peptidyl-tRNA hydrolase TERM 897 955178 - 955189 + g 82 -3 -5.73978 | overlap 955174 AATAGTTTCAGCAAT TTCA CAAT TGAA TTTTTTCTTTGTACT rplY 956272 - 955637 - | 50S ribosomal protein L25/general stress protein Ctc nrdG 957722 - 957027 - | organic radical activating protein rpmI 957798 - 958076 + | 50S ribosomal protein L35 rplT 958096 - 958449 + | 50S ribosomal protein L20 TERM 898 958446 - 958504 + F 77 -3 -5.54338 | gap 4, opp_overlap 958450 958458 958489, overlap 958447 958456 958458 AGCAAAAGCACATAT TTAAGTATT-TAA---TGTCATCCCGTGGT CAA GCCACGGGATGACATATTTATAATAATTAA TTTTTATTTTCGTTC TERM 899 958447 - 958500 + F 71 -6.9 -4.02606 | gap 1, opp_overlap 958450 958458 958489, overlap 958446 958456 958458 GCAAAAGCACATATT TAAGTATTTA-ATGTCATCCCGTGGT CAA GCCACGGGATGACATATTTATAATAA TTAATTTTTATTTTC TERM 900 958456 - 958490 + F 100 -18 -4.02424 | opp_overlap 958450 958458 958489, overlap 958447 958446 958458 CATATTTAAGTATTT AATGTCATCCCGTGGT CAA GCCACGGGATGACATA TTTATAATAATTAAT TERM 901 958458 - 958488 + F 100 -20.6 -3.59935 | opp_overlap 958450 958458, overlap 958456 958447 958446 TATTTAAGTATTTAA TGTCATCCCGTGGT CAA GCCACGGGATGACA TATTTATAATAATTA TERM 902 958488 - 958458 - f 100 -19.9 -3.1364 | opp_overlap 958458 958456 958447 958446, overlap 958450 TATTTAAGTATTTAA TGTCATCCCGTGG TCAAG CCACGGGATGACA TATTTATAATAATTA rpmH 958523 - 958666 + | 50S ribosomal protein L34 rnpA 958680 - 959042 + | ribonuclease P TERM 903 959275 - 959308 + T 72 -3.4 -5.31456 | gap 1, opp_overlap 959277 959286, overlap 959277 959286 TTTGACGAAGCAATC CAGTAAAAAATTCTG ATTTA CAGA-TTTTTTACTA TTTTTTATAGATTGA TERM 904 959286 - 959298 + T 76 -3.4 -5.38348 | opp_overlap 959277 959286, overlap 959277 959275 AATCCAGTAAAAAAT TCTG ATTTA CAGA TTTTTTACTATTTTT TERM 905 959357 - 959402 + T 79 -6.9 -4.57569 | overlap 959361 TGCGTTGTTGCATGG CTCGTTTTATGTCATTCCTGC GAAA GCGGGAATGACATCGAGTAGG TTTTTCGAGCCATGC TERM 906 959361 - 959398 + T 81 -10.7 -2.83903 | overlap 959357 TTGTTGCATGGCTCG TTTTATGTCATTCCTGC GAAA GCGGGAATGACATCGAG TAGGTTTTTCGAGCC RMA_0967 961028 - 959502 - | hypothetical protein TERM 907 960498 - 960472 - G 82 -5.3 -5.30616 | opp_overlap 960472 GCACTTAAAGAAAAA CTATAAATTTG CTCGT CTAATTTATAG CTTATACTAAAATCT TERM 908 960958 - 960972 + g 89 -6.4 -5.65496 | GCTAAGGTTTTTATT TCCTGG ATA TCAGGA TTTTTATTTTTCATA TERM 909 961050 - 961084 + r 93 -10.2 -4.57569 | opp_overlap 961046 961058 ATATAATTAACTTGA TTACCATATTCTATGG TTA CCACATAATATGGTAA TTTTTACAAAAGTCA TERM 910 961213 - 961186 - R 100 -14.4 -5.055 | opp_overlap 961186 961193 GTAACCGGCAAAAAA GGGATAAGATTT AAAA AAATCTTATCCC TAGTTGCGAATAAAA TERM 911 961186 - 961213 + r 100 -14.4 -2.72344 | opp_overlap 961186, overlap 961193 GTAACCGGCAAAAAA GGGATAAGATTT AAAA AAATCTTATCCC TAGTTGCGAATAAAA TERM 912 962948 - 962938 - R 71 -8.2 -3.23174 | overlap 962937 AGATTGGCATAAAAG GCGC AAG GCGC GAAGCCTATAACTAA TERM 913 963032 - 963005 - R 77 -9.2 -3.18274 | gap 1, opp_overlap 963007 963008, overlap 962985 963008 GTGAGTCCAACTCAA CCA-CTACCGGCT GAG AGCCGGTAGGTTG ATGATAGGCACTAGA TERM 914 963007 - 963029 + r 89 -12 -3.21218 | opp_overlap 962985 963005 963008, overlap 963008 GAGTCCAACTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 915 963008 - 963028 + r 100 -15.5 -2.52516 | opp_overlap 962985 963005 963008, overlap 963007 AGTCCAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 916 963028 - 963008 - R 100 -15.5 -2.78891 | opp_overlap 963008 963007, overlap 962985 963005 AGTCCAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 917 963053 - 963039 - R 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_0970 963516 - 963073 - | transposase TERM 918 963582 - 963601 + r 84 -10 -3.55563 | overlap 963583 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 919 963583 - 963600 + r 86 -11.3 -2.73124 | overlap 963582 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC corA 964650 - 963691 - | magnesium/cobalt transporter CorA TERM 920 963761 - 963742 - G 73 -8 -3.53307 | overlap 963758 AATAATTGTAGATAA TAGCATTA AGAA TAATGCTA TAGGATAACCATACG TERM 921 965006 - 964987 - H 84 -10 -3.55563 | overlap 964988 AGCTGATGGTTCAAA CCTCCACC TTCA GGTGGAGA AACTTTAGTTTGAAT TERM 922 965005 - 964988 - H 86 -11.3 -2.73124 | overlap 964987 GCTGATGGTTCAAAC CTCCACC TTCA GGTGGAG AAACTTTAGTTTGAA RMA_0972 965072 - 965515 + | transposase TERM 923 965535 - 965549 + T 79 -10 -2.79183 | TAGCTTAAACTCTAC GGCACT TCT AGTGCC TATCATCAACCTACC TERM 924 965554 - 965588 + T 70 -7.3 -3.6849 | gap 2, opp_overlap 965559 965560, overlap 965556 965560 CTTCTAGTGCCTATC ATCAA-C-CTACCGGCT CTC AGCCGGTAGTGGTTGAG TTATTCACATTAAAT TERM 925 965556 - 965583 + T 77 -9.2 -3.29013 | gap 1, opp_overlap 965559 965560, overlap 965554 965560 TCTAGTGCCTATCAT CAACCTACCGGCT CTC AGCCGGTAG-TGG TTGAGTTATTCACAT TERM 926 965581 - 965559 - T 89 -12 -3.21218 | opp_overlap 965556 965554 965560, overlap 965560 AGTGCCTATCATCAA CCTACCGGCT CTC AGCCGGTAGT GGTTGAGTTATTCAC TERM 927 965560 - 965580 + T 100 -15.5 -2.81969 | opp_overlap 965559 965560, overlap 965556 965554 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATTCA TERM 928 965580 - 965560 - T 100 -15.5 -2.52516 | opp_overlap 965560 965556 965554, overlap 965559 GTGCCTATCATCAAC CTACCGGCT CTC AGCCGGTAG TGGTTGAGTTATTCA RMA_0973 966828 - 966505 - | transposase TERM 929 968164 - 968216 + r 83 -8.2 -4.2181 | opp_overlap 968168, overlap 968165 TATGCAATAAGTCTA ATGAGTATATAAGCAAATAA GTTTTGTTACTCA TTATTTGCTTATATACTCAC TTTAATTCTTTCTTT TERM 930 968165 - 968215 + r 89 -11.7 -3.10646 | opp_overlap 968168, overlap 968164 ATGCAATAAGTCTAA TGAGTATATAAGCAAATAA GTTTTGTTACTCA TTATTTGCTTATATACTCA CTTTAATTCTTTCTT TERM 931 968425 - 968406 - R 86 -11.4 -2.5602 | opp_overlap 968403 968406, overlap 968402 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 932 968406 - 968425 + r 72 -9.2 -2.65808 | opp_overlap 968406 968402, overlap 968403 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 933 969866 - 969899 + r 89 -7.5 -4.98531 | overlap 969867 969869 969893 969894 ATAGCGTTCGTTCTG AGCCAGGATCAAACT CTCA AGTTTGATTCTGTCA TTTTTACTTTAAAAA TERM 934 969867 - 969898 + r 89 -11 -3.58396 | overlap 969866 969869 969893 969894 TAGCGTTCGTTCTGA GCCAGGATCAAACT CTCA AGTTTGATTCTGTC ATTTTTACTTTAAAA TERM 935 969869 - 969896 + r 90 -12.2 -3.35798 | overlap 969867 969866 969893 969894 GCGTTCGTTCTGAGC CAGGATCAAACT CTCA AGTTTGATTCTG TCATTTTTACTTTAA TERM 936 969893 - 969922 + r 71 -6.7 -4.02542 | gap 1, overlap 969869 969867 969866 969894 ACTCTCAAGTTTGAT TCTGTC-ATTTTTA CTT TAAAAATTGACAGG TTTAATTATCACTTT TERM 937 969894 - 969921 + r 70 -8 -3.00441 | gap 1, overlap 969869 969867 969866 969893 CTCTCAAGTTTGATT CTGTC-ATTTTTA CTT TAAAAATTGACAG GTTTAATTATCACTT ntrY 973019 - 971220 - | nitrogen regulation protein NtrY TERM 938 972571 - 972590 + g 78 -7.8 -4.26622 | opp_overlap 972556 972566 972565 972575, overlap 972575 TCGCTTAAATCTTCA GCAACGGC TAAA GCCGTTTC TTTTAGCTGTAATTT TERM 939 972575 - 972586 + g 83 -7.2 -4.70515 | opp_overlap 972566 972565 972575, overlap 972571 TTAAATCTTCAGCAA CGGC TAAA GCCG TTTCTTTTAGCTGTA TERM 940 973326 - 973349 + r 100 -11.2 -4.3851 | opp_overlap 973326 ATGACAATAAAAAAA GCTAGAAATA TTAA TATTTCTAGC TTTATATTTAGTATG TERM 941 973349 - 973326 - R 100 -11.2 -5.89921 | opp_overlap 973326 ATGACAATAAAAAAA GCTAGAAATA TTAA TATTTCTAGC TTTATATTTAGTATG rpsU 973587 - 973381 - | 30S ribosomal protein S21 TERM 942 973935 - 973916 - g 74 -2.2 -5.57729 | overlap 973918 AAATAAGAGAAAAAA TATCTTTA GCCG TAAAGATT AGGGTCAAAACCGTA RMA_0979 973615 - 974271 + | hypothetical protein TERM 943 974700 - 974684 - f 71 -5.2 -4.67173 | CAATTTAAAAAAGAA TGTTCT AATAA AGAACA TGATAGAACATTAGT TERM 944 978125 - 978097 - g 73 -8.9 -3.15758 | overlap 978101 ACAAGTCTTGACGAA GCAATCTCAGGAG TAT CTCACAAGATTGC CACAACACTTTCAGT ileS 975601 - 978921 + | isoleucyl-tRNA synthetase TERM 945 980475 - 980515 + T 100 -20.3 -3.39895 | opp_overlap 980487, overlap 980487 GGCTTGTCCATGGGG TCTAGTTAAAAATACTAAT ATT ATTAGTATTTTTAACTAGA TTGCTTCATCAAAAC TERM 946 980503 - 980487 - T 79 -6.7 -4.65895 | opp_overlap 980475 980487 GGGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAACTAGATTG TERM 947 980487 - 980503 + T 79 -6.7 -4.68424 | opp_overlap 980487, overlap 980475 GGGTCTAGTTAAAAA TACTAAT ATT ATTAGTA TTTTTAACTAGATTG TERM 948 980582 - 980630 + T 100 -17.9 -4.52589 | opp_overlap 980585 980587 980589 980600, overlap 980583 980585 GCACATTTATTAGAT ACATATATTACCATGAAACATGA GAA TCATGTTTCATGGTAATATATAC TTTTCTATAAAAAAA TERM 949 980583 - 980629 + T 100 -21.4 -3.31232 | opp_overlap 980585 980587 980589 980600, overlap 980582 980585 CACATTTATTAGATA CATATATTACCATGAAACATGA GAA TCATGTTTCATGGTAATATATA CTTTTCTATAAAAAA TERM 950 980585 - 980627 + T 100 -24 -3.22094 | opp_overlap 980585 980587 980589 980600, overlap 980583 980582 CATTTATTAGATACA TATATTACCATGAAACATGA GAA TCATGTTTCATGGTAATATA TACTTTTCTATAAAA TERM 951 980627 - 980585 - T 100 -24 -3.02947 | opp_overlap 980585 980583 980582, overlap 980587 980589 980600 CATTTATTAGATACA TATATTACCATGAAACATGA GAA TCATGTTTCATGGTAATATA TACTTTTCTATAAAA TERM 952 980625 - 980587 - T 100 -22.2 -3.0682 | opp_overlap 980585 980583 980582, overlap 980585 980589 980600 TTTATTAGATACATA TATTACCATGAAACATGA GAA TCATGTTTCATGGTAATA TATACTTTTCTATAA TERM 953 980623 - 980589 - T 100 -20.4 -3.08912 | opp_overlap 980585 980583 980582, overlap 980587 980585 980600 TATTAGATACATATA TTACCATGAAACATGA GAA TCATGTTTCATGGTAA TATATACTTTTCTAT accC 983292 - 981232 - | Acetyl-CoA carboxylase, biotin carboxylase TERM 954 981827 - 981816 - G 82 -4.4 -5.4433 | ATATATAAATAAAAA TAGC CGTT GCTA AAAATACGGTAGTTA TERM 955 983250 - 983274 + g 89 -11.4 -3.48593 | overlap 983252 983272 TTTGTATCCTAATGT CACCCCGTGG CTTGA CCACGGGGTC TTGTGTCACAGACTG TERM 956 983252 - 983272 + g 95 -14 -3.31726 | overlap 983250 TGTATCCTAATGTCA CCCCGTGG CTTGA CCACGGGG TCTTGTGTCACAGAC pccB 984871 - 983327 - | propionyl-CoA carboxylase beta chain precursor TERM 957 984187 - 984197 + g 70 -8.2 -3.19482 | opp_overlap 984186 984184, overlap 984186 TGTTGAATGCAAGAT CGGC AAC GCCG CTTTTAGTGGTATGC TERM 958 985199 - 985165 - R 79 -7.3 -4.35339 | gap 2, opp_overlap 985172 985173, overlap 985166 985170 985173 AGATGAATTAATAAA CTCAACCACTACCGGCT GAG AGCCGGTAG-G-TTGAT GATAGGCACTAGAAG TERM 959 985198 - 985166 - R 85 -10.8 -3.20119 | gap 2, opp_overlap 985172 985173, overlap 985165 985170 985173 GATGAATTAATAAAC TCAACCACTACCGGCT GAG AGCCGGTAG-G-TTGA TGATAGGCACTAGAA TERM 960 985197 - 985170 - R 78 -9.2 -3.39434 | gap 1, opp_overlap 985172 985173, overlap 985166 985165 985173 AATTAATAAACTCAA CCA-CTACCGGCT GAG AGCCGGTAGGTTG ATGATAGGCACTAGA TERM 961 985172 - 985194 + r 89 -12 -3.21218 | opp_overlap 985170 985166 985165 985173, overlap 985173 TTAATAAACTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 962 985193 - 985173 - R 100 -15.5 -2.84417 | opp_overlap 985172 985173, overlap 985170 985166 985165 TAATAAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 963 985173 - 985193 + r 100 -15.5 -2.52516 | opp_overlap 985173 985170 985166 985165, overlap 985172 TAATAAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 964 985218 - 985204 - R 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_0987 985681 - 985238 - | transposase TERM 965 985747 - 985766 + H 84 -10 -3.55563 | overlap 985748 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 966 985748 - 985765 + H 86 -11.3 -2.73124 | overlap 985747 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC TERM 967 986607 - 986622 + G 75 -4.7 -5.00884 | ACCATCGCTTTTCTT GGCTT TATTAC AAGCC TTTTTTCCCCAAAAT aas 986028 - 989474 + | acylglycerophosphoethanolamine acyltransferase TERM 968 989504 - 989532 + T 74 -8.9 -3.14683 | opp_overlap 989499, overlap 989508 ACTGTAAGGAGCGTG GCAATCTCAGGAA TCG TGCCTGAGATTTC TTCGTCGACGCCTAT TERM 969 989508 - 989528 + T 83 -8.3 -4.24342 | opp_overlap 989499, overlap 989504 TAAGGAGCGTGGCAA TCTCAGGAA TCG TGCCTGAGA TTTCTTCGTCGACGC TERM 970 989539 - 989553 + T 88 -11.4 -3.31144 | TGAGATTTCTTCGTC GACGCC TAT GGCGTC TTCTCGCAATGACGA tfoX 990010 - 989726 - | regulator of competence-specific genes TfoX znuB 990711 - 989950 - | Zinc/manganese ABC transporter permease protein TERM 971 990897 - 990879 - g 76 -4.6 -5.05301 | opp_overlap 990879 990881, overlap 990873 990881 AAAGAATTAGAAAAA TTTGAGAA AAT TTCTCATA ATTGGTGGAATAAGG TERM 972 990939 - 990921 - g 72 -8.2 -3.4071 | AATAAGGACGGAGAA TTCGGTAT CTT ACACCGAA TAAACCCTATTCGCC ubiG 990846 - 991715 + | 3-demethylubiquinone-9 3-methyltransferase TERM 973 991827 - 991863 + F 95 -10.5 -4.42653 | opp_overlap 991835 991837, overlap 991812 CTTGATCGCGGGATC CAGTTAAATATACTAAT ATT ATTAGTATGTTTAGTTG TTTTCTGGATACCGT TERM 974 991960 - 991976 + G 74 -5.7 -4.71061 | TAATTACTAGATTTG CTCCGTC ACC GTCGGGG TTTTTACATATAGGT gltX2 991932 - 993473 + | glutamyl-tRNA synthetase RMA_0993 993470 - 994006 + | hypothetical protein TERM 975 994566 - 994588 + T 89 -12 -3.21218 | opp_overlap 994567, overlap 994567 CAATTTATCTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 976 994587 - 994567 - T 100 -15.5 -2.7386 | opp_overlap 994566 994567 AATTTATCTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 977 994567 - 994587 + T 100 -15.5 -2.52516 | opp_overlap 994567, overlap 994566 AATTTATCTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 978 994612 - 994598 - T 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_0994 995075 - 994632 - | transposase TERM 979 995141 - 995160 + H 84 -10 -3.55563 | overlap 995142 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 980 995142 - 995159 + H 86 -11.3 -2.73124 | overlap 995141 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC TERM 981 995948 - 995932 - g 70 -2.4 -5.23316 | opp_overlap 995932 GATTATAGTAAAAAA TTAATT GATCG AATTAA ATATTTGAATACTAT spoT14 995884 - 996588 + | guanosine polyphosphate pyrophosphohydrolase/synthetase spoT12 997132 - 996713 - | guanosine polyphosphate pyrophosphohydrolase/synthetase TERM 982 997475 - 997454 - R 70 -7.4 -3.63515 | opp_overlap 997453 CTCTATTCTTAATAA TTAAAGCG TAAAAC CGCTTTAA ACCTTTTGATTATCC TERM 983 997510 - 997534 + r 80 -7.3 -4.63527 | opp_overlap 997510 997513 AGGCTGTTAACAAAA TCACTTTAATT GAT AATTAAAGAGA TTTTTACAGTAATAA TERM 984 997534 - 997510 - R 80 -7.3 -4.63486 | opp_overlap 997510, overlap 997513 AGGCTGTTAACAAAA TCACTTTAATT GAT AATTAAAGAGA TTTTTACAGTAATAA groEL 999762 - 998092 - | chaperonin GroEL TERM 985 998730 - 998749 + g 75 -5 -4.88405 | TTTTCTTATCACCGT TACCGTCA ACAA TTACGGTA TTTTCTTTAGAAATT TERM 986 999461 - 999495 + g 72 -5.8 -4.36914 | gap 1, overlap 999488 CTAGCAAGGACCGTA GCTGTAGTAGTA-CC ATCACC GGCTACTTCTGCAGC TTTTGTAGCAGCGGA groES 1000061 - 999762 - | co-chaperonin GroES TERM 987 1002186 - 1002200 + r 74 -5.8 -4.65838 | overlap 1002190 TTTTATCTACACCGT GAATTT GAA AAATTC TTTTTGCAATATCTA TERM 988 1002381 - 1002367 - R 86 -7.2 -4.91109 | opp_overlap 1002376, overlap 1002371 TTTTTATTATAAAAA TTAAGC TTA GCTTAA AGACAAGCATATTCT TERM 989 1002846 - 1002879 + r 74 -6.3 -4.42653 | opp_overlap 1002856, overlap 1002849 1002856 CTTGATCGCGGGATC CAGTTAAAAATACTA ATAT TAGTATTTTTAATTA TTTTCTGGATACCGT TERM 990 1002849 - 1002876 + r 93 -10.2 -4.33182 | opp_overlap 1002856, overlap 1002846 1002856 GATCGCGGGATCCAG TTAAAAATACTA ATAT TAGTATTTTTAA TTATTTTCTGGATAC TERM 991 1002856 - 1002869 + r 70 -3.9 -5.07971 | opp_overlap 1002856, overlap 1002849 1002846 GGATCCAGTTAAAAA TACTA ATAT TAGTA TTTTTAATTATTTTC TERM 992 1003956 - 1003932 - R 74 -8.7 -3.36515 | overlap 1003930 CTTTATCTTCAAATA GCTTCAATTTA TAG TAAATAGAAGC ATCCGTGCTTATGTT TERM 993 1004906 - 1004892 - R 91 -4.3 -6.01369 | opp_overlap 1004892 GAAATAATAAAAAAA TGCTA TAAAT TAGCA TTTTTTGCAATGACG TERM 994 1004892 - 1004906 + r 73 -4.3 -5.0538 | opp_overlap 1004892 GAAATAATAAAAAAA TGCTA TAAAT TAGCA TTTTTTGCAATGACG rph 1005700 - 1004948 - | ribonuclease PH TERM 995 1005550 - 1005566 + g 70 -8.1 -3.29856 | opp_overlap 1005546 TTTCACAAGTAGCAC TACACAT GAC ATGTGTA TTACCTATTTTAATA grpE 1005846 - 1006430 + | GrpE protein TERM 996 1006764 - 1006727 - g 81 -7.4 -4.44277 | gap 1, opp_overlap 1006727 CATCAAAATTTAAAA TATCAAATAAATT-TGC ATCAA GCATAATTTATCTGATA TTTTTGAGCATATTT TERM 997 1006727 - 1006764 + G 71 -5.2 -4.62904 | gap 1, opp_overlap 1006727 CATCAAAATTTAAAA TATCAAATAAATT-TGC ATCAA GCATAATTTATCTGATA TTTTTGAGCATATTT TERM 998 1007498 - 1007510 + G 71 -5.5 -4.46835 | overlap 1007499 TTATATTCTCAATTT TTGCC TGC GGCAG TTTATTTGGCATTAT perM 1006450 - 1007628 + | permease PerM-like protein RMA_1009 1007632 - 1008315 + | hypothetical protein TERM 999 1008996 - 1009012 + T 70 -7.3 -3.57144 | CTGCACGAACTACTT TACGGGA AAC TCCTGTA TTTGCAGATGCAAAA TERM 1000 1009831 - 1009851 + T 81 -4.1 -5.59564 | opp_overlap 1009831 1009830 ATGAATTTACAAAAT TTATTAAAG TCT CTTCAATAA TTTTTTTAGCTTTCT TERM 1001 1010460 - 1010436 - T 73 -4.5 -5.04222 | opp_overlap 1010436, overlap 1010447 CAATTAAAGCAAAAA TTAAAAAATTA TAA TAATATTTTAA CTTTAAATATATTAT TERM 1002 1010727 - 1010739 + T 77 -7.7 -4.00468 | opp_overlap 1010726 GATAGTACAAAATTC GCTTG TAT CAAGC TTTATGAATTATGCT TERM 1003 1010984 - 1010953 - T 85 -8.1 -4.42491 | gap 1 TAAAAAAGATATAAA CTGTCATACCGGGA CTTGT TCCCGGTATC-CAG AAAACCTTAAAAAGT TERM 1004 1011000 - 1011033 + T 76 -9.7 -3.16683 | gap 1, opp_overlap 1010999 1010998 1011000 AAAACCTTAAAAAGT TTTG-GATCCCGTGGT CAA GCCACGGGATGACAAA TTAATAGCATACCAT TERM 1005 1011033 - 1011000 - T 72 -9 -2.64962 | gap 1, opp_overlap 1011000, overlap 1010999 1010998 AAAACCTTAAAAAGT TTTG-GATCCCGTGG TCAAG CCACGGGATGACAAA TTAATAGCATACCAT TERM 1006 1011383 - 1011359 - T 70 -4.4 -4.91712 | opp_overlap 1011360, overlap 1011360 GGGAATTTAGAAAAA GTACTAAAAT TTAGT ATTTTTGTAC TGGATTATTTCGTCA TERM 1007 1011360 - 1011374 + T 78 -5.8 -4.92783 | opp_overlap 1011359 1011360 GGAATTTAGAAAAAG TACTAA AAT TTAGTA TTTTTGTACTGGATT rpsT 1012026 - 1011739 - | 30S ribosomal protein S20 TERM 1008 1011913 - 1011923 + g 73 -4 -5.08601 | TTCATGTACAACTTT CTTT ATA AAAG TTTTTATTGCACTAG rplQ 1012440 - 1012030 - | 50S ribosomal protein L17 rpoA 1013473 - 1012451 - | DNA-directed RNA polymerase subunit alpha TERM 1009 1013174 - 1013184 + g 77 -5.4 -4.88407 | CATGATACGTTTTTC TGCA ACA TGCA TTTTTACTTCAATAC rpsK 1013878 - 1013492 - | 30S ribosomal protein S11 rpsM 1014277 - 1013900 - | 30S ribosomal protein S13 TERM 1010 1014151 - 1014162 + g 71 -3 -5.09521 | GTTCTTTCACTTTTT TATC TTTC GATA TTTTTGCTTTATTAC adk 1014979 - 1014338 - | adenylate kinase secY 1016293 - 1014992 - | preprotein translocase subunit SecY rplO 1016758 - 1016297 - | 50S ribosomal protein L15 TERM 1011 1016513 - 1016542 + g 70 -2.3 -5.27477 | opp_overlap 1016538, overlap 1016515 1016518 ATCGGCTAATGCTTC TTCAATATTATAA ATAT TTATTATATTGTA TTTTTTAGTTGAAAT rpmD 1016963 - 1016772 - | 50S ribosomal protein L30 rpsE 1017541 - 1016987 - | 30S ribosomal protein S5 TERM 1012 1017551 - 1017573 + r 91 -10.6 -4.14243 | overlap 1017552 TAAAATTTTATTTTC TCTCTAGCTG CAT CAGCTAGAGC TTTTACAATACCGTG TERM 1013 1017552 - 1017572 + r 100 -14.1 -3.08224 | overlap 1017551 AAAATTTTATTTTCT CTCTAGCTG CAT CAGCTAGAG CTTTTACAATACCGT rplR 1017894 - 1017535 - | 50S ribosomal protein L18 TERM 1014 1017632 - 1017642 + g 78 -2.4 -5.66989 | ACGTCTTTTATCCCT GCAG AAT CAGC TTTTTTTGCTATTTC rplF 1018443 - 1017910 - | 50S ribosomal protein L6 rpsH 1018851 - 1018453 - | 30S ribosomal protein S8 rpsN 1019194 - 1018871 - | 30S ribosomal protein S14 rplE 1019736 - 1019194 - | 50S ribosomal protein L5 rplX 1020062 - 1019733 - | 50S ribosomal protein L24 rplN 1020431 - 1020063 - | 50S ribosomal protein L14 rpsQ 1020757 - 1020506 - | 30S ribosomal protein S17 rpmC 1020956 - 1020741 - | 50S ribosomal protein L29 rplP 1021374 - 1020949 - | 50S ribosomal protein L16 rpsC 1022054 - 1021374 - | 30S ribosomal protein S3 TERM 1015 1021738 - 1021724 - GR 75 -7.2 -4.08939 | opp_overlap 1021724 1021722 GAATATTTATATAAA CTTCTT TTA AAGAAG TCATTTTCTCGATAG rplV 1022394 - 1022029 - | 50S ribosomal protein L22 rpsS 1022681 - 1022397 - | 30S ribosomal protein S19 rplB 1023521 - 1022700 - | 50S ribosomal protein L2 rplW 1023869 - 1023522 - | 50S ribosomal protein L23 rplD 1024444 - 1023815 - | 50S ribosomal protein L4 TERM 1016 1024233 - 1024249 + gr 91 -5.2 -5.71983 | CTTGCATTACCTGTA CCTTTT TGCTT AAAAGG TTTTTTTGTGGTTCC rplC 1025198 - 1024551 - | 50S ribosomal protein L3 rpsJ 1025516 - 1025199 - | 30S ribosomal protein S10 TERM 1017 1025755 - 1025718 - R 100 -13.9 -4.17657 | opp_overlap 1025724, overlap 1025720 1025724 TATTACATCTTAAAA CATAAATACCTATTATT TTTT AATAATAGGTATTTATA AAATCAATTAATTAT TERM 1018 1025753 - 1025720 - R 100 -14.3 -3.68378 | opp_overlap 1025724, overlap 1025718 1025724 TTACATCTTAAAACA TAAATACCTATTATT TTTT AATAATAGGTATTTA TAAAATCAATTAATT TERM 1019 1025749 - 1025724 - R 95 -10.7 -4.45771 | opp_overlap 1025724, overlap 1025720 1025718 ATCTTAAAACATAAA TACCTATTATT TTTT AATAATAGGTA TTTATAAAATCAATT TERM 1020 1025724 - 1025749 + r 89 -10.7 -3.9009 | opp_overlap 1025724 1025720 1025718 ATCTTAAAACATAAA TACCTATTATT TTTT AATAATAGGTA TTTATAAAATCAATT tuf 1026965 - 1025763 - | elongation factor Tu TERM 1021 1027118 - 1027161 + H 87 -11.4 -3.0246 | TACACCCGCATTGTG GCACTATTAATAAAATAATT TCAA AGTTATTTTGTTAACAGTGC TATATCAATTTTATT RMA_1043 1027514 - 1028284 + | tRNA/rRNA methyltransferase RMA_1044 1028386 - 1028838 + | hypothetical protein TERM 1022 1029004 - 1028994 - g 84 -5.4 -5.44119 | GCTATTTTAAAAAAA TGTG CAG CACA GGTTAATCATGAGTT fumC 1028835 - 1030226 + | fumarate hydratase RMA_1046 1030295 - 1030576 + | antitoxin of toxin-antitoxin RMA_1047 1030570 - 1030998 + | toxin of toxin-antitoxin TERM 1023 1031163 - 1031185 + F 74 -7.2 -4.01564 | overlap 1031162 GAAAATAATCCACAT TTTTCATAAA AAG TTTATGGAAA TTTCTAAATCTTTTA ftsZ 1031237 - 1032598 + | cell division protein FtsZ TERM 1024 1034053 - 1034019 - T 88 -6.7 -5.31456 | opp_overlap 1034029 GCAACCCAGAAAAAA TAATCAAAAATTCTG TAAAT CAGAATTTTTTACTA GATTGCTTCGTCGAA TERM 1025 1034029 - 1034043 + T 77 -4.3 -5.18357 | opp_overlap 1034019 AAAAATAATCAAAAA TTCTG TAAAT CAGAA TTTTTTACTAGATTG RMA_1051 1034726 - 1034151 - | NifU-like protein TERM 1026 1035016 - 1035052 + r 87 -7.6 -4.82901 | opp_overlap 1035026, overlap 1035026 CTTGACCACGGGAGC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTATGGACCCCG TERM 1027 1035026 - 1035042 + r 86 -3.8 -5.80727 | opp_overlap 1035026, overlap 1035016 GGAGCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT ampG2 1036411 - 1035164 - | AmpG TERM 1028 1036489 - 1036525 + r 78 -9.5 -3.23598 | opp_overlap 1036480 1036483, overlap 1036464 1036493 CCATAAGACTGCGTG GCAATCTCATGAGATAA TAA TAAACTCTTGAGATTGC TTCGTCAATTACTTA rhlE 1037831 - 1036584 - | ATP-dependent RNA helicase RhlE TERM 1029 1037133 - 1037150 + g 72 -2.8 -5.38054 | CCTATTACCAAGTTG TTTAGT TAATTC ACTAAA TTTTTCTTTATCAGA TERM 1030 1037719 - 1037736 + g 74 -5.5 -4.80455 | TCCGATCCCGCCATT GCAACCG GAAT CGATTGC TTTTGTATTTCAGTC TERM 1031 1038174 - 1038189 + r 80 -9 -3.73953 | opp_overlap 1038170 ATATTATTAGATTTA GGGCAT TTTC ATGCCC TTTAGTAAAAATAAT TERM 1032 1038264 - 1038246 - R 79 -4.7 -5.16133 | ATTATAAGACAAAAA CAAAATA TTTAC TATTTTG ATAAAGATGACTAGG cspA 1038576 - 1038334 - | cold shock-like protein RMA_1055 1038659 - 1038790 + | hypothetical protein ksgA 1040979 - 1039981 - | dimethyladenosine transferase TERM 1033 1040935 - 1040958 + g 90 -8.4 -4.96501 | opp_overlap 1040935, overlap 1040955 GGGAATCCAGTAAAA CATATAAAAA CTTG TTTTTATATG TTTGTTTTTATCAAA TERM 1034 1040958 - 1040935 - G 83 -8.4 -4.30978 | opp_overlap 1040935 1040955 GGGAATCCAGTAAAA CATATAAAAA CTTG TTTTTATATG TTTGTTTTTATCAAA RMA_1057 1041960 - 1041049 - | hypothetical protein ostA 1044233 - 1042092 - | organic solvent tolerance protein-like protein TERM 1035 1043453 - 1043437 - G 93 -9.5 -4.36914 | opp_overlap 1043419 1043435 TCTTTTTCTAGAAAA TACGGTA ATT TACCGTA ACTAACTTGAAAATT TERM 1036 1044282 - 1044267 - H 79 -4.8 -5.27779 | TTTAATAGTAAAAAA TAATAG CAAG CTATTA GCAATATATCAAATA TERM 1037 1045369 - 1045355 - g 76 -4.4 -5.16237 | AATCTTATGAAAAAA TATTAT TGA ATAATA CTAGCCGGTTAATTA xseA 1044460 - 1045836 + | exodeoxyribonuclease VII large subunit TERM 1038 1045858 - 1045885 + F 73 -9.2 -2.80113 | gap 1, overlap 1045882 TGGTTTTTATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATG RMA_1060 1045996 - 1046373 + | hypothetical protein TERM 1039 1047355 - 1047344 - g 83 -5.8 -5.09762 | TTGCAAGAAATAAAA TGCG AAAC CGCA AAATTTCCTTTTGAT xth2 1047212 - 1048018 + | exodeoxyribonuclease III TERM 1040 1048155 - 1048130 - f 76 -7.1 -4.32669 | opp_overlap 1048130 1048131, overlap 1048127 1048131 AATTTGATAAAATAA CCATATAAAAA CAAG TTTTTATATGA TTTTAATGGCTTCCC TERM 1041 1048131 - 1048154 + F 71 -8.4 -3.18105 | opp_overlap 1048130 1048127 1048131, overlap 1048130 ATTTGATAAAATAAC CATATAAAAA CAAG TTTTTATATG ATTTTAATGGCTTCC TERM 1042 1048154 - 1048131 - f 71 -8.4 -3.18517 | opp_overlap 1048131 1048130, overlap 1048130 1048127 ATTTGATAAAATAAC CATATAAAAA CAAG TTTTTATATG ATTTTAATGGCTTCC TERM 1043 1048274 - 1048251 - f 75 -8.2 -3.57901 | opp_overlap 1048251 1048257, overlap 1048249 1048254 TTTACGAAAAATATA TGACGATTGT CGGT ACAATCGGCA ATTTTATGTTTTATG TERM 1044 1048251 - 1048274 + F 73 -8.2 -3.55066 | opp_overlap 1048251 1048249 1048254, overlap 1048257 TTTACGAAAAATATA TGACGATTGT CGGT ACAATCGGCA ATTTTATGTTTTATG TERM 1045 1048271 - 1048254 - f 71 -8.5 -2.90234 | opp_overlap 1048251 1048257, overlap 1048251 1048249 ACGAAAAATATATGA CGATTGT CGGT ACAATCG GCAATTTTATGTTTT TERM 1046 1048257 - 1048275 + F 80 -6 -4.95843 | opp_overlap 1048254 1048251 1048249, overlap 1048251 AAAAATATATGACGA TTGTCGGT ACA ATCGGCAA TTTTATGTTTTATGT TERM 1047 1049637 - 1049610 - g 79 -10.6 -2.92668 | opp_overlap 1049601, overlap 1049605 TACTACGGAAGCACA TCCGCTGCCTTT ACAA AAAGGCGGCAGA AGAGTGCGTGTAAAA RMA_1064 1048375 - 1049826 + | GTP-binding protein EngA TERM 1048 1050529 - 1050510 - T 70 -7.2 -3.75766 | GCTATAATTTAATAA TTGCCCAT GATT ATGAGCAA GCATCATCCATAACT ubiB 1054089 - 1052653 - | 2-polyprenylphenol 6-hydroxylase TERM 1049 1053291 - 1053309 + g 90 -11.8 -3.50905 | opp_overlap 1053279, overlap 1053290 ATATAGAAGTGCCGT CTAACCAC TCG GTGGTTAG TATATTTTCTGATGT TERM 1050 1053689 - 1053703 + g 73 -4.2 -5.00851 | overlap 1053674 1053698 TGGCTCACAGTCGTA GACTGC GTG GCAATC TTTTGTTTGCTTGCT ubiE 1054983 - 1054237 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 1051 1054745 - 1054761 + g 71 -6.6 -4.09243 | TTATTAACTCTATCT CTTGCT TTTTT AGCAAG TTTTAAAGCAATATC TERM 1052 1055856 - 1055799 - g 93 -13.1 -3.37622 | opp_overlap 1055809 1055817, overlap 1055817 AACATTCAGGCAGAA GTACTTTTTATTGTAAAACTTGCCAAT ATAG ATTGGCAAGTTTTACAATTTAATTTAC TTGACACATTTTTTA TERM 1053 1055809 - 1055846 + G 100 -20.3 -4.14598 | opp_overlap 1055799 1055817, overlap 1055817 CAGAAGTACTTTTTA TTGTAAAACTTGCCAAT ATAG ATTGGCAAGTTTTACAA TTTAATTTACTTGAC TERM 1054 1055838 - 1055817 - g 100 -11.7 -4.13767 | opp_overlap 1055817 1055809, overlap 1055799 CTTTTTATTGTAAAA CTTGCCAAT ATAG ATTGGCAAG TTTTACAATTTAATT TERM 1055 1055817 - 1055838 + G 100 -11.7 -4.25676 | opp_overlap 1055799 1055817, overlap 1055809 CTTTTTATTGTAAAA CTTGCCAAT ATAG ATTGGCAAG TTTTACAATTTAATT mutM 1055012 - 1055851 + | formamidopyrimidine-DNA glycosidase TERM 1056 1057155 - 1057121 - T 70 -7.3 -3.61398 | gap 2, opp_overlap 1057128 1057129, overlap 1057126 1057129 TTTGGTTGCCAATAA CTCAACCACTACCGGCT GAG AGCCGGTAG-G-TTGAT GATAGGCACTAGAAG TERM 1057 1057153 - 1057126 - T 77 -9.2 -3.28745 | gap 1, opp_overlap 1057128 1057129, overlap 1057121 1057129 TTGCCAATAACTCAA CCA-CTACCGGCT GAG AGCCGGTAGGTTG ATGATAGGCACTAGA TERM 1058 1057128 - 1057150 + T 89 -12 -3.21218 | opp_overlap 1057126 1057121 1057129, overlap 1057129 GCCAATAACTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 1059 1057129 - 1057149 + T 100 -15.5 -2.52516 | opp_overlap 1057129 1057126 1057121, overlap 1057128 CCAATAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 1060 1057149 - 1057129 - T 100 -15.5 -2.81969 | opp_overlap 1057128 1057129, overlap 1057126 1057121 CCAATAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 1061 1057174 - 1057160 - T 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_1074 1057637 - 1057194 - | transposase TERM 1062 1057703 - 1057722 + r 84 -10 -3.55563 | overlap 1057704 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 1063 1057704 - 1057721 + r 86 -11.3 -2.73124 | overlap 1057703 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC RMA_1076 1060114 - 1058684 - | Poly-beta-hydroxyalkanoate depolymerase tatD 1062283 - 1061312 - | putative deoxyribonuclease TatD TERM 1064 1062195 - 1062180 - G 72 -6.2 -4.42653 | opp_overlap 1062180 ACGGTATCTAGAAAA CAACTA ATAT TAGTTG TTTTAATACCCTCAC TERM 1065 1062235 - 1062215 - G 86 -12.6 -2.79679 | opp_overlap 1062210 AATACCCTCACTAGA TCCCGCGA TCGCG TCGCGGGA TGACAAGTTACTACG TERM 1066 1062293 - 1062344 + r 74 -7.4 -4.14874 | gap 1, opp_overlap 1062288 1062290, overlap 1062300 TAACATATTATACTC TTAGTA-GGTGTGTCATACTGCGGT CTC GCCACGGTATGACACACTATTCAAA TTTTGGAAATATTAT TERM 1067 1062300 - 1062336 + r 100 -16.7 -3.15366 | opp_overlap 1062290, overlap 1062293 TTATACTCTTAGTAG GTGTGTCATACTGCGGT CTC GCCACGGTATGACACAC TATTCAAATTTTGGA metG 1063862 - 1062336 - | methionyl-tRNA synthetase tmk1 1064470 - 1063859 - | thymidylate kinase TERM 1068 1066022 - 1066002 - g 79 -9.8 -3.15579 | GCAACTCTTTATCAA TTGCGGTT TATAT AACCGCAA TATCGATGGTAACTT proP4 1064729 - 1066093 + | proline/betaine transporter TERM 1069 1066129 - 1066105 - T 83 -8.1 -4.33767 | opp_overlap 1066105 ATAAATCCAGTAAAA CATATAAAAAT TAA ATTCTTATATG TTTTTTACTAGAAAT TERM 1070 1066105 - 1066129 + T 83 -5.9 -5.14965 | opp_overlap 1066105 ATAAATCCAGTAAAA CATATAAAAAT TAA ATTCTTATATG TTTTTTACTAGAAAT ubiA 1067143 - 1066253 - | prenyltransferase TERM 1071 1067059 - 1067029 - G 90 -4 -5.89827 | overlap 1067032 AAGCAGGAAAAAAAA CCAGCAAATAAGCT ACC AACTTATCTGCACG CATTAATTTTAAAGT TERM 1072 1067056 - 1067032 - G 77 -8.7 -3.63095 | overlap 1067029 CAGGAAAAAAAACCA GCAAATAAGCT ACC AACTTATCTGC ACGCATTAATTTTAA TERM 1073 1068894 - 1068908 + GH 72 -7.1 -3.80133 | overlap 1068891 GACCTGAGTTATTAC CGGCT TGCGT AGCCG TATTTTATCACCCTA valS 1068146 - 1070671 + | valyl-tRNA synthetase RMA_1088 1070640 - 1071392 + | LPS biosynthesis protein RMA_1089 1071445 - 1072278 + | LPS biosynthesis protein TERM 1074 1073698 - 1073719 + F 72 -8.7 -3.11988 | overlap 1073697 TTAGCCTTCCGATGT CATTCCCAC GAAA GCGGGAATG CTTTGTTGCGTGGAC RMA_1093 1074013 - 1075311 + | RmuC family protein RMA_1102 1079240 - 1080067 + | putative oxidoreductase protein TERM 1075 1080686 - 1080720 + T 78 -9.6 -3.34043 | opp_overlap 1080686, overlap 1080692 1080692 TTTAAACCGCTATAA TACTAGTTTAGGATAA ATT TTATACTAAATTAGTA TTGTCCCGTGGTCAA clpX 1082127 - 1080850 - | ATP-dependent protease ATP-binding subunit rimJ 1082715 - 1082164 - | ribosomal-protein-alanine acetyltransferase TERM 1076 1082774 - 1082728 - R 81 -10.6 -2.84059 | opp_overlap 1082729 1082731, overlap 1082725 1082741 CATATATACTAACTA TTTTTCTGTATAATATAAATAT TGC ATATTCATATTATACAGAAGAT TTTTAAATAATGAGT TERM 1077 1082729 - 1082773 + r 100 -14.1 -4.68593 | opp_overlap 1082728 1082725 1082741, overlap 1082731 ATATATACTAACTAT TTTTCTGTATAATATAAATAT TGC ATATTCATATTATACAGAAGA TTTTTAAATAATGAG TERM 1078 1082731 - 1082771 + r 100 -14.5 -2.63922 | opp_overlap 1082728 1082725 1082741, overlap 1082729 ATATACTAACTATTT TTCTGTATAATATAAATAT TGC ATATTCATATTATACAGAA GATTTTTAAATAATG TERM 1079 1082785 - 1082826 + r 81 -8.9 -3.79882 | opp_overlap 1082785 1082788 AAGATTTTTAAATAA TGAGTATACAAGGTGAAAA ACAG TTTCCACCTTGTATACAAA TTTACTGCATATTAT TERM 1080 1082826 - 1082785 - R 90 -11.1 -3.93658 | opp_overlap 1082785, overlap 1082788 AAGATTTTTAAATAA TGAGTATACAAGGTGAAAA ACAG TTTCCACCTTGTATACAAA TTTACTGCATATTAT TERM 1081 1082823 - 1082788 - R 100 -17.2 -3.02639 | opp_overlap 1082785, overlap 1082785 ATTTTTAAATAATGA GTATACAAGGTGAAAA ACAG TTTCCACCTTGTATAC AAATTTACTGCATAT exsB 1083597 - 1082881 - | trans-regulatory protein ExsB RMA_1107 1083899 - 1083564 - | HicB-like protein TERM 1082 1084925 - 1084937 + G 77 -4.9 -5.03747 | GATGCTAATTGGCGG CATTA CAT TAATG TTTTTTGAAAGCTTT TERM 1083 1085333 - 1085358 + G 74 -6.1 -4.63527 | TATTTATTATGCGAT TATCGCCGGAG TTAG CTGTGGCGGTA TTTTTGAGCTACTAA msbA2 1084479 - 1086209 + | multidrug resistance protein TERM 1084 1086260 - 1086280 + F 76 -9.8 -3.03441 | opp_overlap 1086265, overlap 1086262 TCAACCTTAATGTCA TACCACGA CTTGA TCGTGGTA TCTTAGGGCATAATC TERM 1085 1086262 - 1086278 + F 70 -8 -3.07344 | opp_overlap 1086265, overlap 1086260 AACCTTAATGTCATA CCACGA CTTGA TCGTGG TATCTTAGGGCATAA TERM 1086 1086308 - 1086328 + F 78 -9.7 -3.21218 | opp_overlap 1086306 1086308, overlap 1086310 ATCTGTGACACAAGA TCCCGTGGT CAA ACCACGGTA TTGATACTGAACGCT TERM 1087 1086328 - 1086308 - f 78 -9.7 -3.31905 | opp_overlap 1086308 1086310, overlap 1086306 ATCTGTGACACAAGA TCCCGTGGT CAA ACCACGGTA TTGATACTGAACGCT TERM 1088 1086310 - 1086326 + F 90 -12.3 -3.17051 | opp_overlap 1086308 1086306, overlap 1086308 CTGTGACACAAGATC CCGTGGT CAA ACCACGG TATTGATACTGAACG RMA_1109 1086473 - 1086772 + | hypothetical protein TERM 1089 1086838 - 1086820 - f 74 -6.2 -4.43307 | overlap 1086834 CTGTTAACAAAATAA TTTTAATT GAT AATTAAAA AGAATTTTTAGCGAA TERM 1090 1087309 - 1087281 - f 77 -8.9 -3.25802 | opp_overlap 1087285, overlap 1087285 TAGTAAATTGACGAA GCAATCTTGGGAA GAA TTCCTGAGATTGC CATACTCACTAGCGT TERM 1091 1087835 - 1087870 + G 75 -9 -3.36878 | opp_overlap 1087836, overlap 1087836 TAATGGGTATTTTAA ACGGCACTATTGCCAT TGCT ATGGCAATAGCACCGG TTATAAGTAGCTACG TERM 1092 1087869 - 1087836 - g 100 -16.9 -3.60475 | opp_overlap 1087835 1087836 AATGGGTATTTTAAA CGGCACTATTGCCAT TGCT ATGGCAATAGCACCG GTTATAAGTAGCTAC TERM 1093 1087836 - 1087869 + G 86 -12.5 -2.61912 | opp_overlap 1087836, overlap 1087835 AATGGGTATTTTAAA CGGCACTATTGCCAT TGCT ATGGCAATAGCACCG GTTATAAGTAGCTAC bcr2 1087441 - 1088616 + | MFS-type bicyclomycin resistance protein TERM 1094 1088937 - 1088949 + G 81 -7.7 -4.3467 | TGATAGTAGTCATGT CCGTT ATG AACGG TTTTCATATAGAGCT TERM 1095 1089736 - 1089752 + G 79 -5.2 -5.03994 | opp_overlap 1089732 TATGGGAGCAAGCAC TAAGCA AATAA TGCTTA TTTTTATCTATAACG RMA_1111 1088690 - 1090045 + | lipoprotein releasing system, transmembrane protein, LolC/E family protein lolD 1090038 - 1090703 + | lipoprotein releasing system ATP-binding protein LolD TERM 1096 1090779 - 1090789 + F 77 -4 -5.45726 | TAATTTTGGCTCTTT TTTG CTG CAAA TTTTTTTGAAATATG TERM 1097 1092261 - 1092243 - g 77 -3.2 -5.40625 | AGATGATATAAAAAA TATATTGG AAA CAAATATA GATAAGAATATGTTC RMA_1113 1090915 - 1092813 + | hypothetical protein RMA_1114 1092888 - 1094162 + | hemolysin-like protein TERM 1098 1094803 - 1094820 + G 82 -11.3 -2.56914 | overlap 1094798 TACCCACTTATGTCA TTCCCGC GAAA GCGGGAA TCCATTAATGACATA ccmF 1094155 - 1096146 + | cytochrome c-type biogenesis protein ccmF TERM 1099 1098515 - 1098536 + T 100 -8.7 -5.4505 | opp_overlap 1098515 GAAAGCACAAACAAA GCCCCCTTT TGTC AAAGAGGGC TTTTTTCTTGAGGAA TERM 1100 1098536 - 1098515 - T 100 -10.9 -4.65032 | opp_overlap 1098515 GAAAGCACAAACAAA GCCCCCTTT TGTC AAAGAGGGC TTTTTTCTTGAGGAA TERM 1101 1098592 - 1098552 - T 72 -8.6 -3.14132 | gap 1, opp_overlap 1098560, overlap 1098556 1098560 TTTTTTCTTGAGGAA CTTATAAACTTGCTAATCG GGAG CGATTAG-AAGTTTACACG GACTTTTAGAGTACC TERM 1102 1098588 - 1098556 - T 77 -10.2 -2.56596 | gap 1, opp_overlap 1098560, overlap 1098552 1098560 TTCTTGAGGAACTTA TAAACTTGCTAATCG GGAG CGATTAG-AAGTTTA CACGGACTTTTAGAG TERM 1103 1098584 - 1098560 - T 71 -6.6 -3.98826 | gap 1, opp_overlap 1098560, overlap 1098556 1098552 TGAGGAACTTATAAA CTTGCTAATCG GGAG CGATTAG-AAG TTTACACGGACTTTT ompB 1103545 - 1098578 - | Outer membrane protein rOmpB TERM 1104 1099349 - 1099381 + g 78 -7.2 -4.41302 | gap 1 ACCAATTACGACACC GGTGGTTTTAGCT TTATAACC AGCTA-AACCACC TTTCTTACTTTGATG TERM 1105 1103632 - 1103594 - R 90 -9 -4.73614 | TAGTATTAAAACAAA CTTATCAAACGTGCGTCA AGA TATCCCACATTTGATAAG GAAATAACCTAATAT TERM 1106 1103780 - 1103814 + r 100 -12.2 -4.34402 | overlap 1103782 GCGTTATGCCTTATC AGTGTCATCCCGTGGT CAA GTCACGGGATGACATA TTTTCGTCTCACGGA TERM 1107 1103782 - 1103812 + r 100 -17 -3.77806 | overlap 1103780 GTTATGCCTTATCAG TGTCATCCCGTGGT CAA GTCACGGGATGACA TATTTTCGTCTCACG spoT11 1104455 - 1103850 - | guanosine polyphosphate pyrophosphohydrolase/synthetase TERM 1108 1103969 - 1103993 + g 76 -10.1 -2.91322 | overlap 1103967 TTTGCTCTTCTAATC CGTCAAATTGT TTC ACCATTTGACG TGCTTTAGAAAGTAT TERM 1109 1104483 - 1104456 - R 77 -9.2 -3.26188 | gap 1, opp_overlap 1104458 1104459, overlap 1104451 1104459 AATATCACAACTCAA CCA-CTACCGGCT GAG AGCCGGTAGGTTG ATGATAGGCACTAGA TERM 1110 1104458 - 1104480 + r 89 -12 -3.21218 | opp_overlap 1104456 1104451 1104459, overlap 1104459 TATCACAACTCAACC ACTACCGGCT GAG AGCCGGTAGG TTGATGATAGGCACT TERM 1111 1104479 - 1104459 - R 100 -15.5 -2.80779 | opp_overlap 1104458 1104459, overlap 1104456 1104451 ATCACAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 1112 1104459 - 1104479 + r 100 -15.5 -2.52516 | opp_overlap 1104459 1104456 1104451, overlap 1104458 ATCACAACTCAACCA CTACCGGCT GAG AGCCGGTAG GTTGATGATAGGCAC TERM 1113 1104504 - 1104490 - R 79 -10 -2.79183 | GGTAGGTTGATGATA GGCACT AGA AGTGCC GTAGAGTTTAAGCTA RMA_1120 1104967 - 1104524 - | transposase TERM 1114 1105033 - 1105052 + r 84 -10 -3.55563 | overlap 1105034 ATTCAAACTAAAGTT TCTCCACC TGAA GGTGGAGG TTTGAACCATCAGCT TERM 1115 1105034 - 1105051 + r 86 -11.3 -2.73124 | overlap 1105033 TTCAAACTAAAGTTT CTCCACC TGAA GGTGGAG GTTTGAACCATCAGC TERM 1116 1105418 - 1105398 - R 90 -12.6 -3.01924 | opp_overlap 1105393, overlap 1105400 GACTGTGTCCTAAGA TACCGCGG TCGAG CCGCGGTA TGACATTAAATGAAT TERM 1117 1105416 - 1105400 - R 84 -10.8 -3.06696 | opp_overlap 1105393, overlap 1105398 CTGTGTCCTAAGATA CCGCGG TCGAG CCGCGG TATGACATTAAATGA RMA_1121 1106424 - 1105441 - | Beta-glucosidase RMA_1122 1106814 - 1106428 - | hypothetical protein himA 1107306 - 1106947 - | integration host factor alpha-subunit bcp 1107819 - 1108331 + | bacterioferritin comigratory protein htrB 1109314 - 1108442 - | lipid A biosynthesis lauroyl acyltransferase TERM 1118 1109295 - 1109305 + gT 76 -2.6 -5.40004 | ATTAAATATCTGAGC TTTT TTA AAAA TTTTTTCATTTAATA lpxK 1110254 - 1109277 - | tetraacyldisaccharide 4'-kinase RMA_1127 1111133 - 1110258 - | periplasmic protein TERM 1119 1110917 - 1110936 + g 79 -3.6 -5.47159 | TTAGACCTAAGTTTT TAGCATAT ATAC ATTTGCTA TTTTTGTTTGTTAAA ligA 1114074 - 1112005 - | NAD-dependent DNA ligase LigA TERM 1120 1112364 - 1112376 + g 72 -4.9 -4.76041 | TATCACCGATTCCTT CTAAA TTG TTTAG TTTTTGATAAATATC TERM 1121 1113837 - 1113854 + g 75 -7.1 -4.10429 | CTTGATGCGTAACTT TAGCAAA TTTA TTTGCTA TTTTAGCCCCTACTT tgt 1115445 - 1114360 - | queuine tRNA-ribosyltransferase RMA_1139 1118228 - 1118578 + | hypothetical protein TERM 1122 1118975 - 1118948 - T 80 -9.2 -3.73386 | opp_overlap 1118942, overlap 1118949 ACAGAATTATTTAAA GCTCGGTTTAGA GTTA CCTAAACCGAGA AATAAATTACTACTG TERM 1123 1118974 - 1118949 - T 100 -12.7 -2.83309 | opp_overlap 1118942, overlap 1118948 CAGAATTATTTAAAG CTCGGTTTAGA GTTA CCTAAACCGAG AAATAAATTACTACT TERM 1124 1119846 - 1119868 + T 72 -9.2 -2.6989 | opp_overlap 1119847, overlap 1119843 TTAAACAATAAAAAA ACCGAATCTA AAC TAGATTCGGC TAAATTTAATGATTT TERM 1125 1119867 - 1119847 - T 100 -12.7 -6.01369 | opp_overlap 1119846 1119843 TAAACAATAAAAAAA CCGAATCTA AAC TAGATTCGG CTAAATTTAATGATT RMA_1143 1120350 - 1119901 - | ABC transporter substrate binding protein RMA_1144 1120674 - 1120375 - | hypothetical protein TERM 1126 1120606 - 1120580 - G 76 -7.5 -3.91716 | GGACGCCCTAAATAA TCAATATTACG GCTTT CATAATATTGA TTCAAAAACTCATCT rnhA 1121129 - 1120662 - | ribonuclease H TERM 1127 1120703 - 1120715 + g 73 -7.7 -3.85817 | TAGCAGTTTCTCTTC CTTGC ACT GCAAG TTTATCGGCAGCAAT RMA_1146 1121641 - 1121129 - | hypothetical protein TERM 1128 1121522 - 1121532 + g 73 -4 -5.11112 | ATCCCAATATAAATT TTCA TGC TGAA TTTTTGTTAGAATTT TERM 1129 1122998 - 1122986 - g 83 -7.7 -4.66163 | opp_overlap 1122985 AGCTTTACGTAAAAA TCCTC ATG GAGGA GTATTAGTAAAAATA RMA_1147 1122366 - 1123193 + | hypothetical protein TERM 1130 1123685 - 1123665 - g 78 -7 -4.44819 | opp_overlap 1123681, overlap 1123659 CACAAGAGAGCAAAA TAGCAAAA GCAGA TTTTGCTA TAAATAGCGGTGTTG TERM 1131 1123735 - 1123725 - g 71 -5.4 -4.55697 | ACTTGGAGAAACAAA TAGC GAA GCTA ATAAAGGATTTGGAA coaE 1123187 - 1123762 + | dephospho-CoA kinase dnaQ 1123750 - 1124439 + | DNA polymerase III subunit epsilon surf1 1124544 - 1125302 + | Surfeit locus protein 1 TERM 1132 1125341 - 1125306 - f 91 -8.3 -5.10004 | gap 1, overlap 1125308 AAAAATAATTAAAAA GACTG-GACCCCGTGG TCAAG CCACGGGGTGACAGTA GAAGATCGATACATA TERM 1133 1125339 - 1125308 - f 93 -10.9 -4.12448 | gap 1, overlap 1125306 AAATAATTAAAAAGA CTG-GACCCCGTGG TCAAG CCACGGGGTGACAG TAGAAGATCGATACA TERM 1134 1126116 - 1126099 - g 95 -8.5 -5.10077 | AAAGACGGGAAAAAA CGACAAA GCCT TTTGTCG AAAGAATTAATAAGG TERM 1135 1127019 - 1127005 - g 82 -8.6 -4.01158 | AATCTGATCAAAGAA CTTAGC AAA GCTAAG CTTAAAGTTGAGGTA RMA_1151 1125358 - 1127826 + | ATP-dependent helicase fabD 1128593 - 1129549 + | malonyl CoA-acyl carrier protein transacylase TERM 1136 1130439 - 1130453 + T 74 -8.6 -3.31792 | opp_overlap 1130451, overlap 1130427 1130426 AGTGGCCGAAGGCGG CGGTTT GCT AAACCG TTATACGGGTCATAC TERM 1137 1131350 - 1131360 + T 70 -4 -5.08015 | TTTATCCGGTCAATT TCTT CTG AAGA TTTATTTTTTAGCTT TERM 1138 1131388 - 1131406 + T 71 -6.8 -3.97108 | CTTAATTAAATCCCG TTTTTGCT CAT AGCAAGAA TTGTATTTTGCGGTT phbC 1136502 - 1135438 - | Poly-beta-hydroxybutyrate polymerase TERM 1139 1135965 - 1135952 - G 77 -3.1 -5.4251 | CTTATATAGAAAAAA TGAGA AAAA TCCCA CGAGCAGGTAAGTAA TERM 1140 1137389 - 1137409 + G 73 -9.1 -2.83692 | overlap 1137388 1137392 1137398 TAGTTCAAGTATCCA CGACAATTG TGG CAATTGTTG CTATTATTTGTTGTT TERM 1141 1138194 - 1138172 - g 77 -5 -5.14163 | overlap 1138176 ATGCAGTAAGAAAAA TATATTTTGA ATA TCAAAAAATA GCATAAAATAAATTA tlc5 1136698 - 1138200 + | ATP/ADP translocase TERM 1142 1138286 - 1138262 - T 78 -9.3 -3.48593 | overlap 1138264 1138280 CAGTCTGCGACACAA GATACCGCGGT CAA ACCACGGTATG ACACCGAACGCGTTT TERM 1143 1138284 - 1138264 - T 89 -11.9 -3.31726 | overlap 1138262 1138280 GTCTGCGACACAAGA TACCGCGGT CAA ACCACGGTA TGACACCGAACGCGT TERM 1144 1138314 - 1138324 + T 85 -8.2 -4.65895 | TTTTTTGATCCACGC GGGC AAT GCCC TTTTTAGCTAGGAAC RMA_1167 1139156 - 1138725 - | (di)nucleoside polyphosphate hydrolase-like protein TERM 1145 1139193 - 1139212 + r 73 -4.4 -4.95806 | GTTTTCATATTCATT TAAAAATG CAAG CATTTTTG TTTTTGTAATAATTT TERM 1146 1139514 - 1139539 + r 80 -6.1 -4.78237 | opp_overlap 1139517 GGAATTTATGTGATA GCAGGTGATTT ACTT AAATCTCCGGC TTTTATTCTCAAATG tlyC 1140636 - 1139725 - | hemolysin C TERM 1147 1140180 - 1140193 + g 77 -5.3 -5.00616 | overlap 1140174 GAGCTGCAATTATAT GCTTA CGTA TAAGC TTTTTTAAACGACCG TERM 1148 1140516 - 1140529 + g 72 -2.5 -5.24129 | overlap 1140516 TATCGGGCGTTTTTG TTTTT CTAA AAAAA TTTTTTATCGGAGAG TERM 1149 1140617 - 1140627 + g 91 -2.6 -6.01187 | TCTTTTTTTGAAGAT TTTA ACA TAAA TTTTTTTATTTAGTT RMA_1169 1141174 - 1140641 - | putative metalloprotease RMA_1170 1141374 - 1141171 - | PemK-like growth inhibitor lipA 1142719 - 1141829 - | lipoyl synthase glyA 1143974 - 1142712 - | serine hydroxymethyltransferase RMA_1173 1144741 - 1144091 - | Serine esterase grxC2 1145383 - 1144901 - | glutaredoxin-like protein grla nth 1145274 - 1145906 + | endonuclease III TERM 1150 1146164 - 1146184 + Tr 72 -4.7 -4.76087 | ATGTGTTGTCATTAT CCTCAATAA GTT TTATAGGGG TTTGTTTATTATCTA RMA_1177 1147350 - 1146979 - | hypothetical protein TERM 1151 1147096 - 1147071 - G 73 -4.1 -4.99134 | opp_overlap 1147048 1147071 1147085, overlap 1147074 ATCTTAAATTAAAAA TATCTTCCATA TATC TATAGAAGGTA TAAATTTCTATAGTT RMA_1178 1147500 - 1147712 + | hypothetical protein RMA_1181 1148603 - 1148370 - | hypothetical protein TERM 1152 1148613 - 1148628 + rH 76 -3.3 -5.41143 | TATCAATAAATCTTT TCTTC TACTCC GAAGA TTTTTTTAAACGCTA RMA_1182 1149592 - 1148747 - | putative methyltransferase RMA_1183 1149581 - 1150735 + | ABC-type transport systems periplasmic component TERM 1153 1150787 - 1150832 + Tr 76 -6.1 -4.57569 | overlap 1150796 ATGTTGTTGTACGAA CGTTCAGGATGTCATTCCTGC GAAA GCGGGAATGACATTGAGTAGG TTTTTCAAGCCATGC TERM 1154 1150796 - 1150823 + Tr 100 -15 -3.14261 | overlap 1150787 TACGAACGTTCAGGA TGTCATTCCTGC GAAA GCGGGAATGACA TTGAGTAGGTTTTTC tatA 1151060 - 1150896 - | twin argininte translocase protein A pgpA 1151123 - 1151734 + | phosphatidylglycerophosphatase A rplU 1151802 - 1152140 + | 50S ribosomal protein L21 rpmA 1152165 - 1152428 + | 50S ribosomal protein L27 TERM 1155 1152584 - 1152548 - f 80 -6.1 -4.83615 | opp_overlap 1152558, overlap 1152552 CAGGGTCCATAAAAA CAATTTAAAGTACTAAT ATT ATTAGTATTTTAAGCTG GATCCCGTGATCAAG TERM 1156 1152558 - 1152574 + F 71 -6.7 -4.14739 | opp_overlap 1152552 1152548 AAAAACAATTTAAAG TACTAAT ATT ATTAGTA TTTTAAGCTGGATCC lysC 1152690 - 1153919 + | aspartate kinase RMA_1189 1154185 - 1154697 + | hypothetical protein TERM 1157 1154788 - 1154774 - f 80 -7.8 -4.26634 | AAAATAACTTCAAAA CGACCA AAA TGGCCG ACAGCATTGCCGCTT RMA_1190 1155183 - 1155818 + | putative Zn-dependent hydrolases of the beta-lactamase fold proP5 1158017 - 1156680 - | proline/betaine transporter TERM 1158 1157004 - 1156992 - G 70 -2 -5.31275 | TGCTATCACAAAAAA TACA CTTGC TGTA ATAGTACATATAAAT RMA_1193 1158269 - 1158147 - | hypothetical protein RMA_1194 1158570 - 1158247 - | hypothetical protein RMA_1195 1158914 - 1158567 - | hypothetical protein RMA_1196 1159262 - 1158921 - | hypothetical protein RMA_1197 1164071 - 1159263 - | NAD-specific glutamate dehydrogenase TERM 1159 1159394 - 1159438 + g 71 -3.1 -5.15167 | opp_overlap 1159397 1159401 1159405, overlap 1159397 1159401 1159405 AGTTATTATTATTAT CAATCCATAAATCTAAATCAA TAG TTGTTTTAGATTTATTAATTA TTTTTATTAATAATC TERM 1160 1159397 - 1159435 + g 72 -4.8 -4.66002 | opp_overlap 1159397 1159401 1159405, overlap 1159394 1159401 1159405 TATTATTATTATCAA TCCATAAATCTAAATCAA TAG TTGTTTTAGATTTATTAA TTATTTTTATTAATA TERM 1161 1159401 - 1159431 + g 83 -10 -3.78633 | opp_overlap 1159397 1159401 1159405, overlap 1159397 1159394 1159405 ATTATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 1162 1159431 - 1159401 - G 75 -10 -2.57974 | opp_overlap 1159401 1159397 1159394 1159405, overlap 1159397 1159405 ATTATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 1163 1159405 - 1159427 + g 74 -6.4 -4.43642 | opp_overlap 1159401 1159397 1159405, overlap 1159401 1159397 1159394 TTATCAATCCATAAA TCTAAATCAA TAG TTGTTTTAGA TTTATTAATTATTTT TERM 1164 1162586 - 1162567 - G 74 -2.1 -5.46706 | AGCTTAAAATAAAAA TCTTCAC TCCAAC GTGTAGA GATACGATCTAAATC TERM 1165 1165102 - 1165090 - g 83 -6.3 -4.84262 | CAATAATTAATAAAA TCGAT TTA ATCGA AGCTAGTAAAATCTT TERM 1166 1165203 - 1165193 - g 72 -2.6 -5.2422 | AAGTATATTAAAAAA TATT GAA AATA TTGCCGAAAACATGG trmE 1164099 - 1165436 + | tRNA modification GTPase TrmE TERM 1167 1166065 - 1166046 - g 72 -5.1 -4.66833 | GTGTAATTGGAAAAA CATTGAA CAATCT TTCAATG AGTCCCCAAATGATT RMA_1199 1165846 - 1167147 + | hypothetical protein TERM 1168 1167273 - 1167257 - T 86 -9.5 -4.0896 | AAACCTCTGCCAAAA GTGAGAA CAT TTCTCAC AAAACTGATGCAATC RMA_1200 1168441 - 1167965 - | hypothetical protein recA 1169631 - 1170662 + | recombinase A fabG 1170631 - 1171380 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1169 1171393 - 1171416 + F 88 -6.2 -5.47159 | opp_overlap 1171385 1171393, overlap 1171385 1171407 TAAAAATTAATAAGA TTATTTTGTG CTAG CATAAAATAA TTTTTTGTGTTAAAA acpP 1171545 - 1171805 + | acyl carrier protein TERM 1170 1172091 - 1172076 - g 74 -6.2 -4.48333 | overlap 1172088 ATAGACTAAGTAAAA TGGATA AATT TATCCA TTACGGAGTAGCAGC fabF 1171841 - 1173115 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1171 1173276 - 1173299 + F 85 -8.4 -4.39329 | opp_overlap 1173276 AGGAATCCAGTAAAA CATATAAAAA CAAG TTTTTATATG TTTATTCTATCAAAT TERM 1172 1173299 - 1173276 - f 83 -8.4 -4.31379 | opp_overlap 1173276 AGGAATCCAGTAAAA CATATAAAAA CAAG TTTTTATATG TTTATTCTATCAAAT TERM 1173 1174317 - 1174296 - g 76 -7.5 -4.06182 | opp_overlap 1174296 1174295, overlap 1174294 TTAGTTATAAAAATA CTAAAATTA TTGA TAATTTTAG CTTTCGTGTAAAAAA uup 1173398 - 1175179 + | ABC transporter ATP-binding protein Uup RMA_1208 1175260 - 1176330 + | hypothetical protein TERM 1174 1176401 - 1176385 - T 100 -10.9 -5.09762 | overlap 1176397 CCTGAACAAAGAAAA GCAGCTT TAG AAGCTGC AAAAGTACAATTTGA TERM 1175 1176582 - 1176613 + T 89 -11.8 -3.12352 | opp_overlap 1176587, overlap 1176587 AATAATATAACATTC TAAAAGCTGTAACT ATAT AGTTGCAGCTTTTG TATCATTTTGAATTA TERM 1176 1176608 - 1176587 - T 76 -7.3 -4.20712 | opp_overlap 1176582 1176587 TATAACATTCTAAAA GCTGTAACT ATAT AGTTGCAGC TTTTGTATCATTTTG TERM 1177 1176587 - 1176608 + T 93 -9.5 -4.6709 | opp_overlap 1176587, overlap 1176582 TATAACATTCTAAAA GCTGTAACT ATAT AGTTGCAGC TTTTGTATCATTTTG RMA_1209 1177748 - 1176594 - | ATPase TERM 1178 1177820 - 1177810 - R 81 -3.2 -5.76237 | TATAGAAAGAAAAAA CGAC AAA GTCA AAACGCTTTTTCTCG gmk 1178537 - 1177818 - | guanylate kinase TERM 1179 1178630 - 1178642 + r 77 -7.7 -4.02856 | AGTCATGCAAAATTC GCTTG TAT CAAGC TTTATGAATTATTCT RMA_1211 1178955 - 1178644 - | hypothetical protein TERM 1180 1179126 - 1179162 + r 100 -7.6 -5.40072 | opp_overlap 1179136, overlap 1179136 CTTGATCGCGGGATC CAGTTAAAAATACTAA AATTA TTAGTATTTTTTATTG TTTTTTTGGACCCCG TERM 1181 1179136 - 1179152 + r 86 -3.8 -5.80727 | opp_overlap 1179136, overlap 1179126 GGATCCAGTTAAAAA TACTAA AATTA TTAGTA TTTTTTATTGTTTTT mreC 1180114 - 1179275 - | rod shape-determining protein MreC mreB 1181157 - 1180117 - | rod shape-determining protein MreB RMA_1214 1182480 - 1181368 - | putative permease TERM 1182 1182713 - 1182730 + r 72 -2.7 -5.33405 | opp_overlap 1182713 AAGTAATTGACGAAG CAAAATC TCAG GAGTTTG TTTTTATTTCATGAG TERM 1183 1182856 - 1182836 - R 100 -9 -6.02919 | opp_overlap 1182836 TTATAAATAAAAAAA GGCCGAGT AGTAA ACTCGACC TTTTAGGATACTATA TERM 1184 1182836 - 1182856 + r 74 -6.8 -4.16279 | opp_overlap 1182836 TTATAAATAAAAAAA GGCCGAGT AGTAA ACTCGACC TTTTAGGATACTATA pal 1183380 - 1182886 - | peptidoglycan-associated lipoprotein precursor fabH 1184799 - 1183846 - | 3-oxoacyl-(acyl carrier protein) synthase III rpmF 1185040 - 1184807 - | 50S ribosomal protein L32 smpA 1185094 - 1185576 + | tmRNA-binding protein TERM 1185 1186301 - 1186279 - g 84 -6.4 -5.19275 | opp_overlap 1186265, overlap 1186265 ATCGATAAAACAAAA TATCGATATA CTT TTTATCGATA CGGCAGGTAGGCTTC ftsY 1185731 - 1186642 + | Signal recognition particle-docking protein FtsY TERM 1186 1186808 - 1186798 - f 77 -4 -5.34655 | overlap 1186778 TAATTAAAAATAAAA TCAT AAA ATGA CTCAAAAAAATACCT polA 1186805 - 1189432 + | DNA polymerase I TERM 1187 1189544 - 1189522 - T 72 -2.8 -5.43487 | AAAGCATATAAAAAA TCATATATTA ATA TAACATTTGA AGAATTTTAAAAGGA TERM 1188 1190146 - 1190156 + T 74 -6.8 -4.30987 | opp_overlap 1190145 1190146 AAATACCTCATGAAT CCGA CGG TCGG TTTGTTATAGGCGGT TERM 1189 1191087 - 1191075 - T 79 -3.5 -5.52909 | GAACAGTTAAAAAAA TTTTT AGA AAAAA CTACAGATGAAATAT TERM 1190 1192939 - 1192895 - T 100 -11.5 -4.15899 | overlap 1192888 1192892 1192897 1192900 AAAAACATCAAAGAA TATTACTCATTGTGAGCAGCC TAT GGCTGCTCACAATGACGACTC GGTATCCACACACAA TERM 1191 1192937 - 1192897 - T 100 -14.1 -3.63949 | overlap 1192888 1192892 1192895 1192900 AAACATCAAAGAATA TTACTCATTGTGAGCAGCC TAT GGCTGCTCACAATGACGAC TCGGTATCCACACAC TERM 1192 1192934 - 1192900 - T 100 -20.2 -2.9138 | overlap 1192888 1192897 1192892 1192895 CATCAAAGAATATTA CTCATTGTGAGCAGCC TAT GGCTGCTCACAATGAC GACTCGGTATCCACA dnaE 1196550 - 1193005 - | DNA polymerase III subunit alpha TERM 1193 1193054 - 1193036 - G 100 -9.6 -4.28049 | opp_overlap 1193035 1193036 TTTAAAATCTCAAAA TCTTGCCC TTG GAGCAAGA ATTTTTCAGGTAATG TERM 1194 1193973 - 1193997 + g 85 -8.6 -4.25074 | overlap 1193975 TTGCACCCGCGATGT CATACCGTGG CTTGA CCACGGTATC TTTTGAAATTTCCTG TERM 1195 1193975 - 1193995 + g 90 -11.2 -3.71804 | overlap 1193973 GCACCCGCGATGTCA TACCGTGG CTTGA CCACGGTA TCTTTTGAAATTTCC TERM 1196 1196528 - 1196510 - G 89 -9 -4.30995 | opp_overlap 1196513 CTTTCGAGAAAAGAA TAAGAACT TTG AGTTCTTA AATGAATAAATTCAG udg 1198022 - 1196715 - | UDP-glucose 6-dehydrogenase TERM 1197 1199045 - 1199033 - gH 77 -3.5 -5.43487 | opp_overlap 1199033 1199033, overlap 1199026 AAATTAGATAAAAAA TTTTT AAA AAAAA ATATTTTAGTAGAAG TERM 1198 1199417 - 1199391 - gH 73 -7.4 -3.77832 | overlap 1199393 CGGCAAATTCAATAA TAGAGCTAATAA TTC CTATTAGCCCCA ATATCCCTAATAGCT TERM 1199 1199415 - 1199393 - gH 71 -7.8 -3.46873 | overlap 1199391 GCAAATTCAATAATA GAGCTAATAA TTC CTATTAGCCC CAATATCCCTAATAG TERM 1200 1199868 - 1199857 - gH 71 -3 -5.05228 | opp_overlap 1199857 1199858 ATTAAATGATAAAAA TTTC GATA GAAA TATTGAATTTAACCT TERM 1201 1200734 - 1200720 - gH 72 -5.7 -4.42238 | CTATTGTAACTAAAA TACCG GTAGT CGGTA AAATATTTTCCAAAG RMA_1230 1198205 - 1200781 + | hypothetical protein TERM 1202 1200841 - 1200853 + GF 73 -7.7 -3.72231 | CATTCCTTTATGTCA TGCCT GCG AGGCA TTATTGCGTGTGTAC TERM 1203 1200998 - 1200962 - gf 100 -10.5 -4.42653 | opp_overlap 1200972, overlap 1200920 1200972 ACGGTATCCAGAAAA CAACTAAAAATACTAAC AAT ATTAGTATTTTTAACTG GGTCCTGCTACAAAC TERM 1204 1200988 - 1200972 - gf 76 -4.5 -5.07971 | opp_overlap 1200972, overlap 1200962 GAAAACAACTAAAAA TACTAAC AAT ATTAGTA TTTTTAACTGGGTCC TERM 1205 1201099 - 1201113 + GF 77 -4.3 -5.18357 | opp_overlap 1201099 AATAATAATAGAATA TTCTG TAAAT CAGAA TTTTTTACTGGATTG ampG3 1200739 - 1202457 + | AmpG TERM 1206 1202681 - 1202662 - g 85 -8.6 -4.25283 | gap 1 AGTGTTTTATTAAAA CCGCTT-GC TAA GCTAAGCGG TGATACGGTACGAAA tatC 1202524 - 1203285 + | Sec-independent protein translocase protein TatC TERM 1207 1204266 - 1204254 - g 86 -2.7 -5.86061 | overlap 1204255 1204265 TTGCAGCAAAAAAAA CCTAT GAT ATAGA AGTATGGCTTCCGGG serS 1203263 - 1204540 + | seryl-tRNA synthetase TERM 1208 1204536 - 1204521 - f 76 -3.3 -5.32882 | GAGGATTACAAAAAA TCACT GCCTAT AGTGA ATAATTGTTTATTAA virB4-2 1204883 - 1207315 + | VirB4 TERM 1209 1207678 - 1207668 - g 76 -6.8 -4.63218 | CTCCTTGGAATAAAA GCGA CGG TCGC GATAATGATACTTGT TERM 1210 1210562 - 1210550 - g 82 -3.3 -5.64421 | ATCTTAAACAAAAAA CCGGT ACC ACAGG GGAGCATTATGGCAT RMA_1235 1207448 - 1210957 + | hypothetical protein TERM 1211 1211158 - 1211176 + G 84 -11.8 -2.95884 | opp_overlap 1211155 GTGAATATTATACTT GCTTTCTC ATT GAGAAAGC TATGTCACTTGATAA terC 1210962 - 1211867 + | tellurium resistance protein TerC RMA_1237 1211905 - 1212624 + | hypothetical protein TERM 1212 1212653 - 1212692 + F 89 -12.2 -2.75039 | gap 1, opp_overlap 1212651 1212658 TATTTATATGAAAGC TACAATGTCATCCCGCGGT CAA GCCGCGGGATGACAC-GAA TAATTCAACTATATA TERM 1213 1212688 - 1212658 - f 100 -21.3 -3.49209 | opp_overlap 1212653, overlap 1212651 ATATGAAAGCTACAA TGTCATCCCGCGG TCAAG CCGCGGGATGACA CGAATAATTCAACTA RMA_1238 1212718 - 1214382 + | putative methyltransferase TERM 1214 1214459 - 1214473 + F 81 -10 -2.99259 | overlap 1214456 1214461 ATTTATTGACTCTCC TACGCC AAT GGCGTA TAATTATTATGAGTA TERM 1215 1214461 - 1214471 + F 70 -8.2 -3.04443 | overlap 1214459 1214456 TTATTGACTCTCCTA CGCC AAT GGCG TATAATTATTATGAG TERM 1216 1215308 - 1215324 + GF 77 -5.9 -4.7173 | GTGCAGGGCTTATGA TTTTGCT TGG AGCAGAA TTTTTAGCTATGATG nuoJ 1215169 - 1215795 + | NADH dehydrogenase subunit J nuoK 1215764 - 1216102 + | NADH dehydrogenase subunit K nuoL1 1216099 - 1218075 + | NADH dehydrogenase subunit L TERM 1217 1218861 - 1218873 + G 76 -6.3 -4.46926 | overlap 1218864 GATAATATTCCATTA TTTGC TCA GCAAA TTTTATGGTGGGCTA nuoM 1218228 - 1219709 + | NADH dehydrogenase subunit M ccmA 1220082 - 1220702 + | cytochrome c biogenesis protein CcmA TERM 1218 1221304 - 1221284 - T 79 -8.4 -4.00469 | opp_overlap 1221281 1221284 TGAAGAGTAATTAAA CGAGTATA TTACC TATACTCG TAATCTTTGTGTAGT nuoI 1221780 - 1221292 - | NADH dehydrogenase subunit I nuoH 1222982 - 1221960 - | NADH dehydrogenase subunit H TERM 1219 1223052 - 1223069 + r 86 -11.3 -2.62616 | opp_overlap 1223047 1223048 1223049, overlap 1223047 AAAAAAAGAACTGGA TTCCCGC TTTT GCGGGAA TGATATACGGGGTGA nuoG 1225177 - 1223102 - | NADH dehydrogenase subunit G RMA_1249 1225479 - 1225123 - | hypothetical protein acnA 1228284 - 1225648 - | aconitate hydratase TERM 1220 1225935 - 1225913 - G 90 -10.7 -3.78022 | CCCATACCTACTAAA TTTGAGCGA TGTAT TCGCTCAAA GCTCTCGGCAATCAC TERM 1221 1227598 - 1227610 + g 73 -9.1 -2.87211 | AGGTTGACCTAGCAT GGCAG CTT CTGCC TCTATGCCGCCGACT atpC 1228819 - 1228487 - | F0F1 ATP synthase subunit epsilon TERM 1222 1228856 - 1228819 - G 72 -5.8 -4.45723 | gap 2, opp_overlap 1228835, overlap 1228811 1228820 1228822 AATAATATAGTAAAA TTACTACGTCATTCCCGC GTAG GCGGGAATGACAT--CAA CGTCACTTCAACGTC TERM 1223 1228855 - 1228822 - R 90 -12.5 -3.17875 | opp_overlap 1228835, overlap 1228811 1228819 1228820 AATATAGTAAAATTA CTACGTCATTCCCGC GTAG GCGGGAATGACATCA ACGTCACTTCAACGT atpD 1230358 - 1228859 - | F0F1 ATP synthase subunit beta atpG 1231433 - 1230456 - | F0F1 ATP synthase subunit gamma atpA 1233161 - 1231560 - | F0F1 ATP synthase subunit alpha TERM 1224 1232555 - 1232566 + g 83 -7.2 -4.70879 | opp_overlap 1232555 TAATAATAGTATCAA CGGC TATA GCCG TTTTTCCGGTTTGCC TERM 1225 1232983 - 1232995 + g 80 -9.1 -3.68073 | TAAATTTGGGCTATA CCGTC ACC GACGG TTATTACCTGCCCTA atpH 1233819 - 1233256 - | F0F1 ATP synthase subunit delta TERM 1226 1233779 - 1233753 - G 73 -8.8 -3.24747 | overlap 1233756 1233758 CTTGTATATTATCAA CCATAGCGTTAT TAA ATAACGCTACTG CATAATTCTCAATTA TERM 1227 1233776 - 1233756 - G 83 -11.3 -2.80988 | overlap 1233753 1233758 GTATATTATCAACCA TAGCGTTAT TAA ATAACGCTA CTGCATAATTCTCAA TERM 1228 1233774 - 1233758 - G 73 -9.5 -2.94962 | overlap 1233756 1233753 ATATTATCAACCATA GCGTTAT TAA ATAACGC TACTGCATAATTCTC lpdA1 1235351 - 1233972 - | dihydrolipoamide dehydrogenase TERM 1229 1234903 - 1234913 + g 71 -6.8 -4.08767 | ATTTGTTTACCGTCA GGCT TAA AGCC TTTTAAAACCCTAGA mrcA 1240589 - 1238217 - | penicillin-binding protein 1A miaB 1241934 - 1240582 - | tRNA-i(6)A37 thiotransferase enzyme MiaB RMA_1265 1244121 - 1243276 - | hypothetical protein RMA_1266 1244860 - 1244348 - | hypothetical protein kefB 1246565 - 1244829 - | glutathione-regulated potassium-efflux system protein KefB TERM 1230 1245988 - 1245998 + gr 81 -8.2 -4.11394 | opp_overlap 1245987 AATATTGTCAGTAAG GCCG TTA CGGC TTTTAAGAGTGCAAT RMA_1268 1246906 - 1246553 - | Iojap-related protein bolA2 1247016 - 1247273 + | BolA-like protein RMA_1270 1247901 - 1247578 - | transposase TERM 1231 1250375 - 1250353 - H 72 -7.1 -3.83205 | gap 1 AGCGGTTACATTAAA CGGTAA-GCT TGCA AGCATTACCG ACTATGATATTACCT TERM 1232 1251052 - 1251028 - H 74 -8.7 -3.31144 | opp_overlap 1251028 CTTCTACTGTTATAA CCGGTAAAT ACCGCTG ATTTACCGG CATCAATAGTAATAT TERM 1233 1252016 - 1252028 + H 77 -7.7 -3.9644 | TCTATAGTACCGTTA GTACC TCC GGTAC TTGTTATATTACCGG TERM 1234 1255276 - 1255297 + H 80 -8.9 -3.63694 | opp_overlap 1255265 1255276 GGTATTTTCTATATA GAAAAAGTA TGAT TACTTTTTC TTGTTCAAAATAAAT TERM 1235 1255297 - 1255276 - H 73 -8.9 -2.87931 | opp_overlap 1255276, overlap 1255265 GGTATTTTCTATATA GAAAAAGTA TGAT TACTTTTTC TTGTTCAAAATAAAT infA 1255835 - 1256056 + | translation initiation factor IF-1 TERM 1236 1256467 - 1256456 - g 74 -3 -5.38047 | opp_overlap 1256456 CAGTTAGACAAAAAA TAGT TCAG ACTA TTGTTAAGTTCAAAA maf 1256062 - 1256715 + | Maf-like protein dksA 1257285 - 1256848 - | DnaK suppressor-like protein xerC 1258303 - 1257386 - | site-specific tyrosine recombinase XerC TERM 1237 1259045 - 1259030 - R 71 -3.2 -5.31456 | opp_overlap 1259030 GGAATCTAGAAAAAA GCGCAA TTAT TTGAGC TTTTAATATAAAAAA pldA 1259733 - 1259131 - | phospholipase D superfamily protein PLD TERM 1238 1259827 - 1259810 - R 74 -8.5 -3.19656 | opp_overlap 1259819, overlap 1259824 AAAGTCATTGACGAA GCAATCT CATG AGATTGC CACGCAGCCTATGGC TERM 1239 1259851 - 1259824 - R 73 -9.2 -2.81173 | gap 1, opp_overlap 1259819, overlap 1259810 AGCAATCTCATGAGA TTGCCACGCAGCC TAT GGCTGC-TCGCAA TGACGATTTAGTATC ubiD 1263274 - 1261796 - | UbiD family decarboxylase TERM 1240 1262619 - 1262641 + g 76 -7.8 -3.92832 | opp_overlap 1262619 1262616 1262612 CAGATAACGATAGCA GCAGGAAAAG GTT CTTTTTTTGC TTCTTTCCAACGTTT TERM 1241 1263265 - 1263281 + g 93 -4.5 -6.02919 | ACTCCGGTAAATCTT TAAAGCT CAT AGTTTTA TTTTTTTGTTTATAA surA 1265008 - 1263431 - | parvulin-like peptidyl-prolyl isomerase TERM 1242 1263517 - 1263527 + g 80 -2.6 -5.66684 | overlap 1263511 CAGAATTTTTAATAT TATA TAT TATA TTTTTTTCTGAATTG TERM 1243 1265172 - 1265148 - R 100 -14.5 -5.42514 | opp_overlap 1265148 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTTTATGATTATA TERM 1244 1265148 - 1265172 + r 100 -14.5 -5.39755 | opp_overlap 1265148 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTTTATGATTATA ompA 1271113 - 1265198 - | Outer memberane protein rOmpA TERM 1245 1267281 - 1267261 - G 75 -6.9 -4.18494 | opp_overlap 1267265 TACTTGCACCTAAAA CTATTAACG TAC CGTTATTAG TACCGCCGGTATTTT TERM 1246 1267434 - 1267420 - G 71 -5.7 -4.46615 | CATCATTAAGTAAAA CTACG TTTGC CGTAG TAGCTCCAAGTTCTA TERM 1247 1271139 - 1271151 + r 70 -6.3 -4.17048 | opp_overlap 1271138 1271139 1271149 TAATAAAAATTAAAT CACTT AAA AAGTG TTATTTTAACGCAAC RMA_1297 1272144 - 1271335 - | ankyrin repeat-containing protein TERM 1248 1271645 - 1271659 + g 80 -7.2 -4.4648 | opp_overlap 1271658, overlap 1271658 TCACCAGCATATATT GCTTTT TGT AAAAGC TTTTGTCCTAAAGCT ftsK 1274952 - 1272706 - | cell division protein FtsK TERM 1249 1274456 - 1274441 - G 75 -4.8 -4.90079 | opp_overlap 1274436 1274441, overlap 1274436 AGCTTAATAATAAAA TTACTT AAAG AAGTAA ATTTAATTTCAAATA TERM 1250 1274510 - 1274500 - G 72 -2.6 -5.25805 | AATAAAGGTAAAAAA TATT AAT AATA AGTATAGTTGATTTG TERM 1251 1274835 - 1274825 - G 71 -6.8 -4.19817 | opp_overlap 1274823 1274825 GTGACCGAGTTAAAA GACG GAT CGTC TATATTATATGACGT TERM 1252 1276425 - 1276412 - g 71 -6.7 -4.14056 | opp_overlap 1276412 ATTCCAAACGATAAA CCGTT AAAA AACGG TGATATAGTAAATAT map 1276160 - 1276939 + | methionine aminopeptidase TERM 1253 1278064 - 1278050 - gf 81 -9.2 -3.77808 | opp_overlap 1278050 1278050 1278052 CTCATGATAAGATAA CACCGC GCG GCGGCG GTCTTGCTATTGTAG mraY2 1277911 - 1278894 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RMA_1306 1278792 - 1279214 + | hypothetical protein TERM 1254 1279291 - 1279338 + T 100 -11.5 -4.08767 | AGGTGTTGTTGCCTG GCTCAGT-TTATGTCATTCCCGC TTCC GCGGGAATGACATCGTAC-GGGC TTTTCGAACCATACA TERM 1255 1279584 - 1279546 - T 90 -9.9 -4.09509 | gap 1, opp_overlap 1279554, overlap 1279554 ACCAAGGCACACAAA CA-AAAAAAGGAGCCTTT AATT AAAGACTCCTTTTTCGTG TTAATAGCTTGTAAA TERM 1256 1279554 - 1279575 + T 86 -7.3 -4.89233 | opp_overlap 1279554 1279546 ACACAAACAAAAAAA GGAGCCTTT AATT AAAGACTCC TTTTTCGTGTTAATA TERM 1257 1279575 - 1279554 - T 100 -9.5 -6.04953 | opp_overlap 1279554, overlap 1279546 ACACAAACAAAAAAA GGAGCCTTT AATT AAAGACTCC TTTTTCGTGTTAATA RMA_1307 1280343 - 1279615 - | hypothetical protein TERM 1258 1279970 - 1279983 + g 71 -3.1 -5.0917 | overlap 1279966 CCGTTAAATAATACA CTTAC AATA GTAGG TTTATTTTTTACTGA TERM 1259 1280427 - 1280388 - R 71 -5.2 -4.7254 | opp_overlap 1280396, overlap 1280393 1280412 AGTTGTTAGTAAAAA CGATATTAGATAATAATT TTAC AATTTTTATCTAAATTCG ACAAAAAATAGTCTT RMA_1308 1281273 - 1280590 - | putative outer surface protein TERM 1260 1281084 - 1281098 + g 73 -8.6 -3.26787 | opp_overlap 1281083 1281084, overlap 1281083 1281078 1281077 AACCGATACCTAAAT CAACTG GAA CAGTTG TATTAGATTTTAATT fdxA 1281883 - 1281533 - | ferredoxin ccmC 1282580 - 1281888 - | Heme exporter protein C RMA_1311 1283246 - 1282674 - | cytosine deaminase RMA_1312 1284141 - 1283221 - | cation diffusion facilitator family transporter TERM 1261 1284771 - 1284754 - g 77 -3.4 -5.4593 | overlap 1284769 GGAAAACAACAAAAA GCATAC GGTAAT GCATGC CGCCAACCTGACGGA omp 1284328 - 1284807 + | 17 kDa surface antigen precursor RMA_1314 1284844 - 1285236 + | phosphatidylethanolamine-binding protein PEBP znuC 1285416 - 1286117 + | Zinc ABC transporter ATP-binding protein TERM 1262 1287484 - 1287520 + T 70 -4 -4.96996 | GATTTACTAATTCTT TTAAATCATTTTTAGT TATCT GCTGAAAATCATTTAA TTTATTTTCTTTAAG TERM 1263 1287527 - 1287537 + T 74 -4 -5.16472 | ATCATTTAATTTATT TTCT TTA AGAA TTTTTTGAAATTTTT TERM 1264 1289305 - 1289319 + T 74 -5.8 -4.65838 | overlap 1289309 TTTTATCTACACCGT GAATTT GAA AAATTC TTTTTGCAATATCTA TERM 1265 1289500 - 1289486 - T 86 -7.2 -4.91109 | opp_overlap 1289495, overlap 1289490 TTTTTATTATAAAAA TTAAGC TTA GCTTAA AGACAAGCATATTCT uvrA 1292850 - 1289959 - | excinuclease ABC subunit A TERM 1266 1290792 - 1290816 + g 76 -7.9 -4.05747 | overlap 1290793 GAAATACTTTGCTAG TTGGCTCTAAA TGC TTTAGAGCCGC TTTATATAGAGTATG TERM 1267 1290793 - 1290815 + g 84 -11.4 -3.02966 | overlap 1290792 AAATACTTTGCTAGT TGGCTCTAAA TGC TTTAGAGCCG CTTTATATAGAGTAT TERM 1268 1291418 - 1291432 + g 82 -4.3 -5.43974 | TTGAGTATACGCTCA GCAAT AAATA ATTGC TTTTTATTTAATTTT ssb 1292930 - 1293388 + | single-strand DNA-binding protein RMA_1321 1293388 - 1294224 + | DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein RMA_1323 1295468 - 1294893 - | hypothetical protein TERM 1269 1295978 - 1295952 - g 75 -9.6 -2.62184 | opp_overlap 1295949 1295952 TTCTTCTTCACATCA GGCTTTACTT AGTTTTA AAGTAAAGCC TAATTCTAAACAAAA TERM 1270 1295952 - 1295978 + G 76 -9.6 -2.82623 | opp_overlap 1295952, overlap 1295949 TTCTTCTTCACATCA GGCTTTACTT AGTTTTA AAGTAAAGCC TAATTCTAAACAAAA RMA_1324 1295908 - 1296231 + | hypothetical protein TERM 1271 1296260 - 1296281 + F 72 -8.7 -3.17739 | overlap 1296259 1296262 1296273 CTAGACTTCCAATGT CATTCCCGC ATAG GCGGGAATC TAGTTTATATTTATT TERM 1272 1296262 - 1296279 + F 87 -11.3 -3.12488 | overlap 1296260 1296259 1296273 AGACTTCCAATGTCA TTCCCGC ATAG GCGGGAA TCTAGTTTATATTTA TERM 1273 1296438 - 1296459 + G 93 -8.9 -4.83169 | AATTTAATGATTCAC TCTCTTTAT AGTA ATAAAGAGA TTTTTATGAGGGAGT TERM 1274 1298069 - 1298051 - g 70 -4.6 -4.65895 | overlap 1298053 TGCCTCAGCTAAAAA TCTAGAGT TAA ACCCTAAA AATAAAATCATAGAG htpG 1296369 - 1298240 + | heat shock protein 90 TERM 1275 1298405 - 1298388 - g 83 -11.3 -2.86514 | overlap 1298384 1298385 AATTAATAAAATGGA TTCCCGC CTAC GCGGGAA TGAGATCGAGAAAAT hemA 1298371 - 1299672 + | 5-aminolevulinate synthase TERM 1276 1299791 - 1299775 - f 71 -8.1 -3.31144 | overlap 1299778 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATCCAG TERM 1277 1299828 - 1299814 - f 77 -4.3 -5.18357 | opp_overlap 1299807 1299814 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTAATTATTT TERM 1278 1299814 - 1299828 + F 87 -4.3 -5.73672 | opp_overlap 1299814, overlap 1299807 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTAATTATTT TERM 1279 1300130 - 1300109 - f 77 -4.5 -5.20154 | opp_overlap 1300109 1300111 1300120 ATATAATTTAAAAAA TAGTTGTAT TTTT ATACCACTA TAATATTAATTTTTT TERM 1280 1301472 - 1301486 + G 83 -10 -3.85389 | TAGCAGGTTTTAGAG CCGGTA AAG TACCGG TTTCAATTGTTAAGA TERM 1281 1302024 - 1301998 - g 76 -7.5 -4.07885 | gap 1 TACTTTTCCTGAAAA TTACCATGCTAA AGAT TTAGCA-GGTAA GGATGCTCGTTTTGT TERM 1282 1302066 - 1302053 - g 71 -6.7 -4.16182 | GTAGTACAAATTAAA GCAGT ACAT ACTGC AGAACCTACCGTTAT tig 1301327 - 1302673 + | trigger factor obg 1303916 - 1302816 - | GTPase ObgE gltA 1305247 - 1303919 - | type II citrate synthase RMA_1331 1305576 - 1305346 - | transcriptional regulator TERM 1283 1305518 - 1305557 + g 79 -8.8 -3.84406 | gap 1, opp_overlap 1305527 1305544, overlap 1305520 1305520 TTTCTATACCTCCTC T-TGCTATAATGGCTTCTT TTA AAGTAGCCATTATAGCTCA TTATTATGATCCACG TERM 1284 1305520 - 1305554 + g 100 -17.4 -3.00003 | opp_overlap 1305527 1305544, overlap 1305518 1305520 TCTATACCTCCTCTT GCTATAATGGCTTCTT TTA AAGTAGCCATTATAGC TCATTATTATGATCC TERM 1285 1305547 - 1305527 - G 70 -8.3 -3.28712 | opp_overlap 1305520 1305520 1305518, overlap 1305544 CTCCTCTTGCTATAA TGGCTTCTT TTA AAGTAGCCA TTATAGCTCATTATT RMA_1332 1306766 - 1305882 - | uracil-DNA glycosylase TERM 1286 1306910 - 1306899 - gH 70 -4.4 -4.74706 | CTGAAGAGCTAAAAA TTGC AGCA GCAA ATGTAGCACTTGATA RMA_1333 1306685 - 1307626 + | ribosomal large subunit pseudouridine synthases RluD subfamily protein TERM 1287 1307713 - 1307697 - fH 77 -3.8 -5.50313 | TATAAAATGAAAAAA TCTAAT GCTAA ATTAGA AGAAGCCTTATATTC TERM 1288 1309384 - 1309372 - fH 72 -3.3 -5.16572 | overlap 1309376 ACTGAACTTAAAAAA CGAGC ACC GCTAG GTAGTGTAGATGAGA hemK 1309435 - 1310970 + | bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase RMA_1335 1311874 - 1310936 - | Sua5/YciO/YrdC/YwlC family translation factor protein glyS 1313898 - 1311871 - | glycyl-tRNA synthetase subunit beta TERM 1289 1313071 - 1313042 - GR 75 -2.4 -5.5454 | gap 2, overlap 1313045 TCAAATAAACAAAAA TATTTC-T-GATGC GTAC GCATCGAAGAAATA AGTACTTCTTTAGGT glyQ 1314731 - 1313865 - | glycyl-tRNA synthetase subunit alpha vapC3 1315173 - 1314763 - | toxin of toxin-antitoxin RMA_1339 1315403 - 1315167 - | putative antitoxin of toxin-antitoxin TERM 1290 1315479 - 1315466 - R 75 -2.5 -5.54264 | opp_overlap 1315459, overlap 1315457 AAAGATTCAAAAAAA TAAAA TATT TTTTA TTAATTTGAGGTCTT RMA_1340 1316128 - 1315493 - | hypothetical protein TERM 1291 1316019 - 1316005 - G 80 -2.8 -5.74122 | GATTATAGAAAAAAA GCATAA ACT TAATGC CGGTATCGATCATTT TERM 1292 1317553 - 1317526 - H 95 -11.6 -3.8046 | opp_overlap 1317526 1317529, overlap 1317529 1317545 TGCAAAAAGGCTAAA TAATAGTCATAA TAAA TTATGACTATTA TAATATACACGTTAT TERM 1293 1317526 - 1317553 + H 86 -11.6 -2.6381 | opp_overlap 1317526 1317529 1317545, overlap 1317529 TGCAAAAAGGCTAAA TAATAGTCATAA TAAA TTATGACTATTA TAATATACACGTTAT TERM 1294 1317529 - 1317550 + H 78 -8.9 -3.4678 | opp_overlap 1317529 1317526 1317545, overlap 1317526 AAAAAGGCTAAATAA TAGTCATAA TAAA TTATGACTA TTATAATATACACGT TERM 1295 1317550 - 1317529 - H 85 -8.9 -4.01315 | opp_overlap 1317526 1317529, overlap 1317526 1317545 AAAAAGGCTAAATAA TAGTCATAA TAAA TTATGACTA TTATAATATACACGT TERM 1296 1318115 - 1318129 + H 75 -2.8 -5.54338 | overlap 1318108 TACCTCAACTTCTAC GGGTCT AGA AGATTC TTTTTCTTTTACTTC TERM 1297 1318352 - 1318381 + H 70 -8.1 -3.06261 | opp_overlap 1318347 TTGCAAGAAGTTTTT ATTGTTAGTTATT TCTC AATAACTAACAAA TATTAAGAATTAAAA TERM 1298 1318577 - 1318591 + H 82 -8.6 -4.01419 | TGATATGTCTAGCTT TAGCAG TAT CTGCTA TTTGATTCCTTACTA TERM 1299 1319343 - 1319330 - g 87 -2.3 -6.04953 | AGATAAAGAAAAAAA GGAAG TTAT CTGCC CATATTGTAGTAAGA RMA_1344 1319199 - 1319381 + | hypothetical protein mutL 1319366 - 1321213 + | DNA mismatch repair protein rpmG 1321434 - 1321604 + | 50S ribosomal protein L33 rpsP 1321618 - 1321953 + | 30S ribosomal protein S16 TERM 1300 1322019 - 1322039 + F 83 -9.7 -3.82097 | ATTCAGCCCCTGTCA TCCCGCTAT TTG ATTGCGGGA TTTAGTAAATTTGAC TERM 1301 1322328 - 1322344 + F 71 -8.1 -3.31144 | overlap 1322331 TGAGATTGCTTCGTC GAATTAC TGC GTAATTC TTCTCGCAATGACGA ampD2 1322393 - 1323142 + | negative regulator of beta-lactamase expression lipB 1323133 - 1323768 + | lipoyltransferase RMA_1350 1323765 - 1324280 + | hypothetical protein nhaA 1325510 - 1324290 - | Na+/H+ antiporter NhaA dapE 1328223 - 1329371 + | succinyl-diaminopimelate desuccinylase TERM 1302 1329532 - 1329518 - f 74 -5.8 -4.72201 | TCTCATAAAAAATAA CATAAA ATT TTTATG CAGCAATTTAGTATT holC 1329524 - 1329994 + | DNA polymerase III subunit chi RMA_1360 1331112 - 1330000 - | putative permease TERM 1303 1330889 - 1330869 - G 84 -11.3 -3.10187 | opp_overlap 1330869, overlap 1330867 1330866 TATAGATATAAATCA CGGTAATAA CCG TTATTACCG GTAACAGAATAAATA RMA_1361 1331376 - 1331221 - | hypothetical protein dinJ 1331745 - 1331476 - | DNA-damage-inducible protein J RMA_1363 1332491 - 1331832 - | hypothetical protein phnP 1332488 - 1333258 + | beta-lactamase superfamily hydrolase TERM 1304 1333619 - 1333589 - g 81 -8.4 -4.17316 | overlap 1333592 ATTTTGCCAAAAGAA CAAGCAATTTCTAT GGC AAAGGAATTGCTTG CAAAATTTAAGCTAA glnQ 1333262 - 1333984 + | glutamine ABC transporter ATP-binding protein RMA_1366 1334236 - 1334403 + | antitoxin of toxin-antitoxin TERM 1305 1334855 - 1334845 - f 71 -6.8 -4.08216 | opp_overlap 1334834 1334854 GCATCGGTTTCAAAA GCTG TTT CAGC AACGGCAATTGCATT TERM 1306 1335056 - 1335043 - f 72 -2.4 -5.40474 | ACGTTGCTAAAAAAA CAAC AAGCTA GTTG TATAAACCCGGGCAA TERM 1307 1335897 - 1335917 + G 70 -3.9 -4.99035 | opp_overlap 1335898, overlap 1335898 CGGAGAAATTATTAT AGCCCGT AGCAGAG ACGGGCA TTTTTATATCAATGC TERM 1308 1335898 - 1335916 + G 71 -7.4 -3.58698 | opp_overlap 1335898, overlap 1335897 GGAGAAATTATTATA GCCCGT AGCAGAG ACGGGC ATTTTTATATCAATG RMA_1368 1335505 - 1336245 + | putative aspartyl protease RMA_1369 1337098 - 1336772 - | hypothetical protein dnaX 1338665 - 1337115 - | DNA polymerase III subunits gamma and tau TERM 1309 1337283 - 1337297 + g 91 -2.9 -6.11229 | opp_overlap 1337283 AGTAAAAACAGCTAA CAAAT CTTCT ATTTG TTTTTTTATTTTGCT TERM 1310 1338516 - 1338500 - G 71 -6.5 -4.11371 | opp_overlap 1338499 1338500, overlap 1338502 TAATACCTGTTAAAA GATAGCC TCC GGCTAGC CTATCGTTTAAAATA TERM 1311 1338514 - 1338502 - G 71 -7.7 -3.64984 | opp_overlap 1338499 1338500, overlap 1338500 ATACCTGTTAAAAGA TAGCC TCC GGCTA GCCTATCGTTTAAAA lolA 1339571 - 1338891 - | Outer membrane lipoprotein-sorting protein LolA TERM 1312 1339510 - 1339528 + g 77 -3.2 -5.47964 | overlap 1339511 AGATAAATAATGATT AGAAAAAA TAT TTTTTTCA TTTTTGTTGTTTTAT pntA1 1339605 - 1340729 + | NAD(P) transhydrogenase subunit alpha pntA2 1340717 - 1341124 + | NAD(P) transhydrogenase subunit alpha greA 1341879 - 1341283 - | transcription elongation factor GreA sec59 1341913 - 1342539 + | dolichol kinase dnaG 1342478 - 1344331 + | DNA primase TERM 1313 1345149 - 1345126 - g 70 -2 -5.36314 | gap 1, opp_overlap 1345131, overlap 1345128 CAAAATAGCAAAAAA TA-TAATAATT TGG AATTATTAATA AATGAAGTTTCGGAA TERM 1314 1345146 - 1345128 - g 72 -6.2 -4.27753 | opp_overlap 1345131, overlap 1345126 AAATAGCAAAAAATA TAATAATT TGG AATTATTA ATAAATGAAGTTTCG TERM 1315 1345423 - 1345445 + G 70 -7 -3.83437 | opp_overlap 1345423 1345436, overlap 1345421 1345424 ATGATTGCTGAATTA TCGGTTATAG AAT CTAAAACCGG TCTTTTAGTTAATGA rpoD 1344376 - 1346277 + | RNA polymerase sigma factor RpoD TERM 1316 1346358 - 1346338 - f 90 -12.6 -3.31726 | overlap 1346320 1346336 GCTTGTGATACAAGA TCCCGTGG TCAAG CCACGGGA GATGACAGTGGGCTA truA 1346373 - 1347113 + | tRNA pseudouridine synthase A alaS 1349976 - 1347325 - | alanyl-tRNA synthetase TERM 1317 1350041 - 1350079 + H 100 -16 -2.85484 | overlap 1350038 AATTACGTAGTACTT GCGTGGCAATCTCGTGCC AAA GTCCTGAGGTTGCCACGC TCCTTATCAGTCGTT TERM 1318 1350261 - 1350240 - g 71 -3.1 -5.1417 | overlap 1350242 CTATAAAATTAAAAA TATTTTCTT TCAA AAGAAAAAA GATCGTGGCGTTACT RMA_1380 1350155 - 1351729 + | hypothetical protein TERM 1319 1351778 - 1351725 - f 83 -7 -4.78237 | gap 2, overlap 1351730 1351732 1351733 TAGTTGATAATAAAA CGT-A-ATATTCCATGTCATTCCCGC GTAG GCGGGAATGACATAAATCATGCAACG GCACTAATAACCCAA TERM 1320 1351771 - 1351730 - f 100 -13.9 -3.4724 | overlap 1351725 1351732 1351733 GATAATAAAACGTAA TATTCCATGTCATTCCCGC GTAG GCGGGAATGACATAAATCA TGCAACGGCACTAAT TERM 1321 1351769 - 1351732 - f 100 -14.3 -3.28907 | overlap 1351730 1351725 1351733 TAATAAAACGTAATA TTCCATGTCATTCCCGC GTAG GCGGGAATGACATAAAT CATGCAACGGCACTA TERM 1322 1351768 - 1351733 - f 100 -17.8 -2.5626 | overlap 1351732 1351730 1351725 AATAAAACGTAATAT TCCATGTCATTCCCGC GTAG GCGGGAATGACATAAA TCATGCAACGGCACT RMA_1381 1351801 - 1352439 + | hypothetical protein RMA_1382 1352440 - 1353399 + | hypothetical protein TERM 1323 1353435 - 1353419 - f 71 -8.1 -3.31461 | overlap 1353422 TAGTCATTGCGAGAA GAATTAC GCA GTAATTC GACGAAGCAATCCAG TERM 1324 1353451 - 1353477 + F 76 -9.7 -3.0161 | opp_overlap 1353450 1353457, overlap 1353450 1353457 GACGAAGCAATCCAG TAAAAATTCTG ATTTA CAGAATTTTTA ATTATTGTTCTAGAT TERM 1325 1353471 - 1353457 - f 70 -4.3 -4.77157 | opp_overlap 1353451 1353450 1353457, overlap 1353450 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTAATTATTGTT TERM 1326 1353457 - 1353471 + F 73 -4.3 -5.03201 | opp_overlap 1353457 1353450, overlap 1353451 1353450 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTAATTATTGTT TERM 1327 1353798 - 1353808 + F 75 -8.2 -3.70622 | overlap 1353796 GGCTTTGTAGTACGA CCGC TTG GCGG TATTATTTTCGGTAA proP7 1354294 - 1355565 + | proline/betaine transporter hemF 1355543 - 1356388 + | coproporphyrinogen III oxidase TERM 1328 1356404 - 1356432 + T 74 -8.9 -3.1158 | opp_overlap 1356406, overlap 1356406 1356412 CTTTTTTAAAATCAT AACCGGAATGGCA AAA TGCTATTTCGGTG TGTTGAGATTACTTT TERM 1329 1356406 - 1356430 + T 87 -11.5 -3.10879 | opp_overlap 1356406, overlap 1356404 1356412 TTTTTAAAATCATAA CCGGAATGGCA AAA TGCTATTTCGG TGTGTTGAGATTACT TERM 1330 1356430 - 1356406 - T 70 -7.1 -3.68359 | opp_overlap 1356406 1356404 1356412 TTTTTAAAATCATAA CCGGAATGGCA AAA TGCTATTTCGG TGTGTTGAGATTACT TERM 1331 1357013 - 1357034 + T 75 -8.1 -3.57867 | gap 1, overlap 1357009 TGGCAGTTAATTTCA GTCCGTGACA ATT TGTCACG-AC TTCACTTTTTTCTTC TERM 1332 1357420 - 1357404 - T 79 -7.3 -4.4078 | GGGGTGTAACCAAAA GTGAGAA AAT CTCTCAC ATAACTGATGTAATC TERM 1333 1357434 - 1357455 + T 90 -12.3 -2.82491 | opp_overlap 1357434, overlap 1357424 ACATAACTGATGTAA TCCTCGACC TTAT GGTCGGGGA TATAATAGGTATGTC TERM 1334 1357455 - 1357434 - T 81 -10.1 -3.11173 | opp_overlap 1357434 1357424 ACATAACTGATGTAA TCCTCGACC TTAT GGTCGGGGA TATAATAGGTATGTC RMA_1387 1358467 - 1358018 - | hypothetical protein hemH 1359507 - 1358467 - | ferrochelatase TERM 1335 1358946 - 1358970 + gr 74 -2.9 -5.38326 | opp_overlap 1358947, overlap 1358939 1358947 CGTGAGCAGAAAATA ATATACGAAAA TTT TTATCGTATAG TTTTTCTTTAATTAA TERM 1336 1358969 - 1358947 - GR 74 -6.4 -4.35042 | opp_overlap 1358946 1358939 1358947 GTGAGCAGAAAATAA TATACGAAAA TTT TTATCGTATA GTTTTTCTTTAATTA hemE 1360549 - 1359464 - | uroporphyrinogen decarboxylase TERM 1337 1359804 - 1359823 + g 77 -5.8 -4.70319 | opp_overlap 1359804 1359807 GGAAAAGCAATTATA GGAGTTTT TGGA AAAACTTC TTTTACTTTTAGTAC TERM 1338 1360010 - 1360021 + g 74 -3 -5.25656 | AGCAAGTATTTTATT TTCA TATA TGAA TTTTTTGCTCGTTTT TERM 1339 1360229 - 1360241 + g 75 -4.9 -4.88918 | TTTGAATTGCTTTAA TATAG GCC CTATA TTTTCTTTAAAATCC TERM 1340 1360527 - 1360544 + g 70 -4.3 -4.65458 | opp_overlap 1360519 1360527 CTAAAAATATTAAAA TAATAAA TATA TTTATTA TTTATTGTTTATGTA