TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.694523 %AT, 818974 nt, 4809 terms. Intergenic: 0.753219 %AT, H2T: 191777 nt, 1656 terms; T2T: 87037 nt, 1544 terms; H2H: 49930 nt, 857 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15603881|ref|NC_000963.1| Rickettsia prowazekii str. Madrid E, complete genome (length 1111523) RP001 1 - 822 + | hypothetical protein RP002 906 - 1298 + | thioredoxin (trxA) RP003 1309 - 2067 + | O-antigen export system ATP-binding protein RFBE (rfbE) TERM 1 2093 - 2072 - g 75 -7.5 -4.17701 | TTCATAAATGATAAA GTATTTTTT TTCT AAAAAATAC TGGAGGGCAATAGCA RP004 2064 - 2840 + | O-antigen export system permease protein RFBA (rfbA) RP005 2837 - 3724 + | hypothetical protein TERM 2 5780 - 5763 - g 75 -7.1 -4.13183 | AAAAGTTAAAGGAAA GCAAAAA TATA TTTTTGC ATGTAGCGAGCAGAA RP006 3757 - 5877 + | hypothetical protein RP007 7021 - 6227 - | UDP-N-acetylglucosamine acyltransferase fabZ 7468 - 7031 - | (3R)-hydroxymyristoyl-ACP dehydratase lpxD 8699 - 7659 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 3 8836 - 8824 - H 72 -4.9 -4.91511 | opp_overlap 8824 ACTTGACTATAAAAA TACTA ATA TAGTA ATTTTAAACTAAATT RP011 9661 - 10686 + | NIFR3-like protein (nifR3) TERM 4 11200 - 11223 + G 95 -6.8 -5.75342 | CAATTGATATGTGTC CTTCTTCTAA GAAC TTTGAAGAAG TTTTTTTTAAAAAGC RP012 10683 - 11756 + | hypothetical protein RP013 12255 - 11821 - | hypothetical protein RP014 13142 - 12243 - | hypothetical protein TERM 5 13071 - 13088 + g 74 -2.1 -5.61596 | gap 1, opp_overlap 13071 AAAGAAATATAGCAA TCTCAGTA TTG TA-TGAGA TTTTTTTATAAAAAT RP015 14302 - 13139 - | poly(A) polymerase (pcnB) RP016 15067 - 15975 + | hypothetical protein TERM 6 16599 - 16564 - g 78 -6.4 -4.76312 | overlap 16590 TAGAAGACGTAAAAA TTTCAAATACTACT AATTCAAG AGGAGTATTTGAAA ATACATCTAAGTCGT RP017 15972 - 17855 + | hypothetical protein RP018 17954 - 18997 + | 190 kDa antigen precursor TERM 7 19057 - 19037 - T 86 -9.1 -4.4009 | GGTTATTGTATAAAA CTTCTAACT TAT AGTCAGAAG TCAGATAACCATAGT RP020 21685 - 21182 - | F0F1 ATP synthase subunit B RP021 22161 - 21685 - | F0F1 ATP synthase subunit B' RP022 22398 - 22174 - | F0F1 ATP synthase subunit C RP023 23160 - 22432 - | F0F1 ATP synthase subunit A RP024 23413 - 23165 - | hypothetical protein RP025 24283 - 23465 - | hypothetical protein RP026 24374 - 24979 + | hypothetical protein RP027 25991 - 25233 - | hypothetical protein TERM 8 25682 - 25694 + g 72 -6.3 -4.29049 | opp_overlap 25682, overlap 25679 ATTGATATTTACCAA GCTTT TTA AAAGC TTCTTTTGCTACTTG RP028 26838 - 26086 - | hypothetical protein recF 28171 - 27089 - | recombination protein F TERM 9 27300 - 27313 + g 83 -6.7 -5.06816 | TCAGCAAGGATTATT GCGAT TAAT ATCGC TTTTTGTTCACCAGT TERM 10 29766 - 29776 + r 75 -5.4 -5.01553 | TTTATATGCTACGTC TACG TCC CGTA TTTTATTTATCCATT TERM 11 30108 - 30124 + r 90 -10.9 -3.28984 | opp_overlap 30105 TTACTAAATTGATCT GAGCCTA GTA TAGGCTC TTAATAATTAAATTG RP030 30791 - 30132 - | hypothetical protein RP031 32622 - 33197 + | SCO2 protein precursor (sco2) RP032 33782 - 33213 - | hypothetical protein TERM 12 34175 - 34196 + G 75 -6 -4.72986 | AGGATTTGTCTTAGG TAGTACTA TATCGT TAGTACTA TTTTTGATAACAATG RP033 33843 - 34499 + | hypothetical protein RP034 36077 - 34755 - | hypothetical protein TERM 13 34979 - 34994 + g 73 -9 -3.08642 | TTATGGTTTGTTGTG GCACTC TAGC GAGTGC TTCAATACATGCTAT RP035 37347 - 36622 - | acetoacetyl-CoA reductase TERM 14 37266 - 37276 + g 75 -4 -5.32944 | AATTAGCAATTACCG TAAG ATC CTTA TTTTTTAATTCTAAA TERM 15 38837 - 38821 - g 84 -6.6 -5.22039 | CGTAAAGGCAAAAAA GCAGAT ACTGA ATCTGC AGAAAATAATTATGA RP036 38374 - 40950 + | protein disaggregation chaperone RP037 42696 - 41533 - | O-sialoglycoprotein endopeptidase RP038 44007 - 42820 - | acyl-COA desaturase 1 (aco1) TERM 16 43037 - 43057 + g 76 -6.9 -4.48741 | opp_overlap 43054 GAGGATTCTTCAATT TCTTTGCTT TTT AAGCATAGA TTTTCTAATAAATTA TERM 17 44893 - 44863 - g 73 -5.6 -4.65446 | opp_overlap 44873, overlap 44858 ACGATATAGATAAAA TCGTTGATGATTTT ACT AAAATCATTAAAGA TAATAATGGGACTAT rpsF 44799 - 45164 + | 30S ribosomal protein S6 rpsR 45189 - 45476 + | 30S ribosomal protein S18 TERM 18 45705 - 45690 - g 74 -3.4 -5.4111 | AAGAAGTAGAAAAAA TTAATA CCAT TATTAA AGATCAGCAATTAGT rplI 45488 - 46003 + | 50S ribosomal protein L9 TERM 19 46247 - 46267 + G 81 -8.4 -4.24745 | overlap 46244 TTGCAGTTTCTGGTG GTAGTGAT TCAAT ATCACTAC TTTATCTTGCTAATA TERM 20 47107 - 47097 - g 70 -5.4 -4.55118 | opp_overlap 47097 TAAGCGTATACAAAA TGAG TTA CTCA TATATAGAGAGTTTG RP042 46162 - 47454 + | cell cycle protein MESJ (mesJ) RP043 47505 - 49418 + | cell division protein FTSH (ftsH) sdhB 49663 - 50448 + | succinate dehydrogenase iron-sulfur subunit RP045 51984 - 50908 - | hypothetical protein RP046 52769 - 51963 - | prolipoprotein diacylglyceryl transferase TERM 21 52066 - 52056 - G 72 -5.4 -4.68908 | GCTATCTAAAATAAA TCCA ATC TGGA TGTCAGGCTCCCTAA TERM 22 52725 - 52715 - G 72 -2.6 -5.36441 | GGCCTATAGAAAAAA TAAT TGG ATTA ATATTAGGCAATATC RP047 52968 - 54134 + | hypothetical protein TERM 23 55225 - 55208 - g 71 -7.1 -3.72152 | CAATTAAAAGCAGAA TTTTTGC TGGA GCAAAAA AAGTAGACTTGCTCG RP048 54283 - 55965 + | putative inner membrane protein translocase component YidC RP049 55965 - 56510 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) TERM 24 56683 - 56673 - g 70 -5.4 -4.55826 | opp_overlap 56673 56671, overlap 56668 TTGAAAACATTAAAA GTAG CTT CTAC TATTTTGATTAGTTG TERM 25 56776 - 56757 - g 71 -8 -3.45737 | CAATTAGGATTAGAA GATACTTT TGAT AAAGTATC ACTGCCTGGTGCATC RP050 56520 - 57101 + | hypothetical protein RP051 57554 - 57171 - | hypothetical protein TERM 26 57574 - 57591 + r 70 -7.1 -3.71645 | ACCTTAAGCCTTATT CTTGATA AGAA TATCAAG TTTAAGTATCACATT RP052 58919 - 58644 - | hypothetical protein RP053 59296 - 60792 + | ADP,ATP carrier protein TERM 27 61600 - 61620 + G 73 -5.5 -4.64048 | overlap 61602 61613 AATAAGCTAATATGG TATGTTTGT TTA GCAAACATG TTTGTTTATATCATC RP054 60865 - 62154 + | glycerol-3-phosphate transporter (glpT) ndk 62317 - 62739 + | nucleoside diphosphate kinase TERM 28 62785 - 62813 + G 81 -10.3 -3.06492 | opp_overlap 62794 62795 62797, overlap 62794 GGTGGTGGACATGCA GGTGTAGAAGCAG CAG CTGCTTCTGCGCG TCTTGGAGTACATAC TERM 29 64137 - 64123 - g 72 -4.4 -5.15117 | overlap 64124 GAAAAGCGGAAAAAA TTTTTT ACA AAAAAA TGTAAAAATATAGAG RP056 62743 - 64608 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA gidB 64592 - 65167 + | glucose-inhibited division protein B RP058 65164 - 65931 + | SOJ protein (soj) RP059 65918 - 66778 + | stage 0 sporulation protein J (spo0J) TERM 30 68354 - 68376 + G 80 -8.6 -3.77831 | opp_overlap 68357, overlap 68369 GGAGCAAATGTTATA TTATTAGATG AGC CATCTAATGA TTTAGATATTGATAC RP060 66950 - 68617 + | putative ABC transporter ATP-binding protein TERM 31 68732 - 68712 - g 82 -6.3 -5.25735 | opp_overlap 68715 TTAAAAAATTAAAAA CAATAAAAG CAT CTTTTATTA AGTCGTTTTTTATAA RP061 68678 - 68932 + | hypothetical protein RP062 68967 - 69794 + | 2-dehydro-3-deoxyphosphooctonate aldolase RP063 71666 - 71334 - | HESB protein (hesB1) RP064 71916 - 73067 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein argS 73076 - 74806 + | arginyl-tRNA synthetase TERM 32 75385 - 75369 - g 74 -2.3 -5.56264 | TGCAAAGATAAAAAA GAAATTT CCA AAAATTC TTAAAAATGTTGTGA TERM 33 75408 - 75393 - g 76 -6.2 -4.67168 | AAAAATTCTTAAAAA TGTTGT GATC ACAACA AAAAAAGTTAAATAT RP066 74869 - 75537 + | hypothetical protein TERM 34 76705 - 76715 + G 70 -4 -4.90266 | opp_overlap 76696 76705 TGAATATTTTAGAGA TTCT ACA AGAA TTTTTAGTTCATAGA RP067 75660 - 77876 + | DNA topoisomerase IV subunit A TERM 35 78115 - 78094 - T 70 -7.4 -3.81879 | opp_overlap 78094 78093, overlap 78086 CCTAAAATCTAAGAA CTACCTAT AATCTA ATAGGTAG CTATTATAATGATAT TERM 36 78116 - 78135 + T 71 -6.6 -4.1347 | opp_overlap 78086 TAATCTAATAGGTAG CTATTATA ATGA TATAATAG TTTGTATAATTAAAA TERM 37 78190 - 78162 - T 71 -6.9 -4.19342 | gap 1, opp_overlap 78162 78166, overlap 78159 78154 AAAATAATTAAATAA TCAAGGCATTAG GTTACT CTAA-GCCTTGA TTCATATAAATATTC RP068 79540 - 78218 - | hypothetical protein dcd 79807 - 80373 + | deoxycytidine triphosphate deaminase TERM 38 80593 - 80612 + G 70 -5.8 -4.23674 | gap 1, opp_overlap 80584 80595, overlap 80596 AATAAACACTGATAC TAGTGAGGC AAT GCCTCA-TA TTTCTGTTAATGCAC TERM 39 80596 - 80610 + G 86 -10 -3.71627 | opp_overlap 80584 80595, overlap 80593 AAACACTGATACTAG TGAGGC AAT GCCTCA TATTTCTGTTAATGC TERM 40 80887 - 80903 + G 79 -9.5 -3.51904 | overlap 80886 AATTTTATTATCTGT TCATTGC CCA GCAATGA TATTTCCATTTGCTA RP070 80570 - 81028 + | preprotein translocase subunit SecB TERM 41 81196 - 81161 - f 100 -9.4 -5.39721 | opp_overlap 81164 81167, overlap 81164 GCACTAGATAAAAAA TTATAATTTAGTTAAT AATT ATTAACTAAATTATTA TCAAAATTGAATTTT TERM 42 81164 - 81193 + F 93 -11.1 -3.3344 | opp_overlap 81161 81164, overlap 81167 CTAGATAAAAAATTA TAATTTAGTTAAT AATT ATTAACTAAATTA TTATCAAAATTGAAT TERM 43 81193 - 81164 - f 95 -11.1 -3.48081 | opp_overlap 81164 81167, overlap 81161 CTAGATAAAAAATTA TAATTTAGTTAAT AATT ATTAACTAAATTA TTATCAAAATTGAAT TERM 44 81167 - 81190 + F 76 -8.4 -3.8062 | opp_overlap 81164 81161, overlap 81164 GATAAAAAATTATAA TTTAGTTAAT AATT ATTAACTAAA TTATTATCAAAATTG RP071 81225 - 81938 + | transcriptional activator protein CZCR (czcR) queF 81942 - 82763 + | 7-cyano-7-deazaguanine reductase RP073 83351 - 82791 - | hypothetical protein RP074 84805 - 83408 - | NAD(P) transhydrogenase subunit BETA (pntB) TERM 45 83492 - 83475 - G 75 -5.7 -4.84673 | opp_overlap 83470 83474, overlap 83470 CCAAATAACATAAAA GTTTTAT TATG ATAAAAC AGTTCATTTGCTATA RP075 85707 - 84904 - | hypothetical protein RP076 85783 - 86667 + | hypothetical protein RP077 86654 - 87910 + | proline/betaine transporter (proP1) secG 88164 - 88466 + | preprotein translocase subunit SecG RP080 88611 - 88459 - | hypothetical protein TERM 46 89039 - 89066 + r 91 -8.6 -5.08255 | opp_overlap 89039 89042 TTATAGGTTCATAAA TAAGGATAAGAT TCTA AACTTATCCTTA TTTTATTTTACAAAT TERM 47 89066 - 89039 - R 78 -8.6 -3.88787 | opp_overlap 89039, overlap 89042 TTATAGGTTCATAAA TAAGGATAAGAT TCTA AACTTATCCTTA TTTTATTTTACAAAT RP081 90099 - 89074 - | 190 kDa antigen precursor TERM 48 89329 - 89341 + g 70 -3.5 -5.01845 | ATGAGCACTTAGTGT TAATA TTA TATTA TTTTTGCTTATTATA RP082 90543 - 90112 - | hypothetical protein RP083 92050 - 90485 - | hypothetical protein RP084 92693 - 92196 - | hypothetical protein TERM 49 94240 - 94253 + H 70 -3.9 -5.12474 | TGTCTCTGTTTATTG TACTA TATT TAGTA TTTTTCTATATTATA cysS 94769 - 96142 + | cysteinyl-tRNA synthetase rpsB 96550 - 97440 + | 30S ribosomal protein S2 TERM 50 97832 - 97842 + G 72 -5.4 -4.71426 | opp_overlap 97832 GTCATTGAAGTAAAT TCTG AAA CAGA TTTTGTTGCTCGAAA tsf 97595 - 98524 + | elongation factor Ts TERM 51 98723 - 98711 - f 80 -6.3 -5.13344 | opp_overlap 98711 ATATTAATACAAAAA TGCTT TAT AAGCA TTGTTCATTGTATAG RP088 98802 - 98981 + | hypothetical protein TERM 52 99339 - 99355 + T 74 -8.1 -3.37522 | CAGGATTAATTATTT TAGTACT TCC AGTACTA TTCATTAACTAAAGT RP089 101102 - 99717 - | 3-deoxy-D-manno-octulosonic-acid transferase TERM 53 100469 - 100483 + g 73 -5.8 -4.57341 | TTTTTATGATAAGCT GAAAAA ATC TTTTTC TTTTTAGCCAAGCTT TERM 54 100892 - 100906 + g 81 -7.2 -4.53163 | opp_overlap 100868 CATTTCTATGCATGT CTACAT AAG ATGTAG TTTTGTGGTCTGTAA RP090 101755 - 101099 - | hypothetical protein RP091 103118 - 101880 - | aspartate aminotransferase TERM 55 101945 - 101917 - G 74 -8.2 -3.69069 | gap 1 TTAATTCTAATACAA GCCTCTTCTA-GC TCTT GCATAGAAGTGGC ATAGGAGATTCTAAA TERM 56 102062 - 102025 - G 78 -10.2 -2.72166 | gap 1, opp_overlap 102025 102027, overlap 102024 102034 TCTTCAAGTAAATAT TC-GGAAAAATTATTGC TATTC GCAATAATTCTTCCTGA TTTAGTTTTAGTGCC TERM 57 102025 - 102062 + g 79 -8 -4.23781 | gap 1, opp_overlap 102024 102025 102034, overlap 102027 TCTTCAAGTAAATAT TC-GGAAAAATTATTGC TATTC GCAATAATTCTTCCTGA TTTAGTTTTAGTGCC TERM 58 102027 - 102059 + g 85 -10.8 -3.11579 | opp_overlap 102024 102025 102034, overlap 102025 TTCAAGTAAATATTC GGAAAAATTATTGC TATTC GCAATAATTCTTCC TGATTTAGTTTTAGT TERM 59 102052 - 102034 - G 76 -6.1 -4.62904 | opp_overlap 102027 102025, overlap 102024 102025 AAATATTCGGAAAAA TTATTGC TATTC GCAATAA TTCTTCCTGATTTAG TERM 60 102673 - 102662 - G 77 -5.8 -4.91712 | CGCAATTTACAAAAA CAGG TGTC CCTG TGCTAAGTGCAACCA TERM 61 103637 - 103620 - g 70 -4.3 -4.90917 | opp_overlap 103620 103622 103630 103631, overlap 103630 103631 AAATCTAATGAAAAA TATAAAA CTAT TTTTATA AATTTTTTAAAAAAT RP092 103293 - 104297 + | hypothetical protein RP093 104302 - 105057 + | VACJ lipoprotein precursor (vacJ) RP094 105077 - 105676 + | hypothetical protein TERM 62 105773 - 105756 - f 70 -4.9 -4.82901 | overlap 105757 GTGGCTTGATAAAAA CTGATAC TATT GTATCAA GCACTTTAAACATGA alr 106459 - 107673 + | alanine racemase RP096 107825 - 108604 + | hypothetical protein RP097 108607 - 109365 + | ribonucleotide ABC transporter ATP-binding protein RP098 109367 - 109618 + | hypothetical protein TERM 63 110069 - 110101 + F 72 -7.9 -3.58719 | opp_overlap 110071, overlap 110067 110065 110071 GTCATAATTTCTCAA AATTACTACCTAGTT TAT AGTTAGGTAGTAATA TATATTTATTTTATT TERM 64 110071 - 110099 + F 90 -10.5 -3.33072 | opp_overlap 110071, overlap 110069 110067 110065 CATAATTTCTCAAAA TTACTACCTAGTT TAT AGTTAGGTAGTAA TATATATTTATTTTA TERM 65 111029 - 111039 + F 70 -4 -5.23765 | TATTGAACTAGCTTC CTAT GCA ATAG TTTTTCTGTTATTTA rpmB 111301 - 111594 + | 50S ribosomal protein L28 RP100 111591 - 111827 + | 50S ribosomal protein L31 RP102 112320 - 112964 + | GTPase EngB TERM 66 113582 - 113605 + F 82 -10.4 -2.85297 | overlap 113578 113576 CATCTGATCTTTTAT TTGTCGGTTT AACT AGACCGACAA TGATATTTGGAGTAA RP103 114023 - 116440 + | VIRB4 protein precursor (virB4) TERM 67 117078 - 117064 - g 100 -7.2 -6.34616 | GGAAAATAAAAAAAA GGAATA TCA TATTCC ATATAGAGGTAAGCC RP104 116558 - 119932 + | hypothetical protein TERM 68 120720 - 120742 + G 70 -5.6 -4.32034 | TTTGTTGTATATTTT TCTATAGGTT TGG GACCTTTAGA TTTTAGTGGTGGTCA TERM 69 121145 - 121169 + G 70 -5.1 -4.62051 | TATGTCTGGCCACGT TATTATACTTG TGG CAGGTATGGTA TTTTCTGTAATATTT RP105 119919 - 121937 + | hypothetical protein RP106 121944 - 124859 + | hypothetical protein TERM 70 124931 - 124964 + F 100 -18.5 -3.21099 | opp_overlap 124935, overlap 124935 TAATCACACACTCCT GAAATGACGTAAGTA ATTG TACTTACGTCATTTC TTCGTAATAAAAAAA TERM 71 124935 - 124960 + F 100 -13.5 -4.2704 | opp_overlap 124935, overlap 124931 CACACACTCCTGAAA TGACGTAAGTA ATTG TACTTACGTCA TTTCTTCGTAATAAA TERM 72 124960 - 124935 - f 100 -13.5 -3.57119 | opp_overlap 124935 124931 CACACACTCCTGAAA TGACGTAAGTA ATTG TACTTACGTCA TTTCTTCGTAATAAA TERM 73 126555 - 126541 - g 74 -5 -4.90013 | opp_overlap 126541 TAAGTTAATTAAAAA TTCTGC AGT ACAGAA TATAGTGAAAGCTGC RP107 125021 - 127687 + | hypothetical protein TERM 74 127800 - 127782 - f 74 -8.8 -3.06312 | overlap 127794 AAATTTTTTATGGAA CCCGCGAT CAA ATCGCGTG ATAGCGAGTTAAAAT TERM 75 128665 - 128643 - g 70 -3.5 -5.02323 | overlap 128644 GGATGATAAAGAAAA CGTATCAAC AAATA ATTGATACA CCGGGTTATAAGATA RP108 127814 - 131281 + | hypothetical protein RP109 131718 - 132773 + | phosphate acetyltransferase RP110 132770 - 133927 + | acetate kinase (ackA) TERM 76 134653 - 134636 - g 88 -4.1 -5.75538 | GTTAAAAAATAAAAA CCTCATA TTCT TATGTGG GCGTTATGAAGGGAT trmD 134310 - 135014 + | tRNA (guanine-N(1)-)-methyltransferase rplS 135031 - 135447 + | 50S ribosomal protein L19 RP113 135900 - 135664 - | hypothetical protein secF 135972 - 136907 + | preprotein translocase subunit SecF RP115 137071 - 138336 + | NADH dehydrogenase I subunit F RP116 138506 - 139300 + | signal peptidase I (lepB) rnc 139300 - 139977 + | ribonuclease III era 139974 - 140861 + | GTP-binding protein Era ruvC 140950 - 141423 + | Holliday junction resolvase TERM 77 142172 - 142158 - T 78 -5.8 -5.16038 | AGATAATAAATAAAA TCTAAT AAT ATTAGA TACACATATTAAGGG RP120 143749 - 142685 - | hypothetical protein TERM 78 143285 - 143300 + g 76 -6.2 -4.62984 | overlap 143285 GGCCCCGTTGATTGG GATGAT TTTC ATCATC TTTTCTATATCATGC RP121 144705 - 143749 - | hypothetical protein TERM 79 144420 - 144435 + g 71 -4.8 -4.77757 | overlap 144429 AGATAATTTTTTTTA CATTTT CTAC AAAATG TTTTGGTTTTTGAGC RP122 144804 - 145838 + | HFLK protein (hflK) RP123 145982 - 146842 + | HFLC protein (hflC) RP124 146873 - 148414 + | periplasmic serine protease DO-like precursor RP125 148519 - 149262 + | hypothetical protein RP126 149400 - 149774 + | succinate dehydrogenase cytochrome B560 subunit (sdhC) RP127 149933 - 150310 + | succinate dehydrogenase hydrophobic membrane anchor protein (sdhD) TERM 80 152074 - 152059 - g 70 -4 -4.87892 | gap 1 CTGCAAGAAAAGAAA GCA-GAG GGG CTCATGC ACGTGAAGATTATCC sdhA 150444 - 152234 + | succinate dehydrogenase flavoprotein subunit RP129 152354 - 153010 + | putative glutamine transport system permease protein GLNP (glnP) rpsL 153172 - 153561 + | 30S ribosomal protein S12 RP131 153595 - 154077 + | 30S ribosomal protein S7 TERM 81 154901 - 154883 - g 76 -6.1 -4.57073 | opp_overlap 154883 154882 TAGTGCTTTTAAAAA TAAAGGT GTGCA ACCTTTA CTTGATGCCATAGTC RP132 154089 - 156188 + | elongation factor G TERM 82 156280 - 156324 + F 100 -14.9 -2.79501 | opp_overlap 156281 156294, overlap 156290 156294 AAGTGCAGTTTATAA ATTTTAATAATAAATCAATAA ATT TTATTGATTTATTATTAAAAA TATGATAGGAGTGTA TERM 83 156323 - 156281 - f 100 -18.4 -3.89524 | opp_overlap 156280 156290 156294, overlap 156294 AGTGCAGTTTATAAA TTTTAATAATAAATCAATAA ATT TTATTGATTTATTATTAAAA ATATGATAGGAGTGT TERM 84 156290 - 156314 + F 91 -10.3 -3.64487 | opp_overlap 156281 156294, overlap 156280 156294 TATAAATTTTAATAA TAAATCAATAA ATT TTATTGATTTA TTATTAAAAATATGA TERM 85 156310 - 156294 - f 75 -6.7 -4.4634 | opp_overlap 156290 156280 156294, overlap 156281 AATTTTAATAATAAA TCAATAA ATT TTATTGA TTTATTATTAAAAAT TERM 86 156294 - 156310 + F 75 -6.7 -4.45068 | opp_overlap 156294 156281, overlap 156290 156280 AATTTTAATAATAAA TCAATAA ATT TTATTGA TTTATTATTAAAAAT TERM 87 156442 - 156426 - f 74 -8.1 -3.41366 | opp_overlap 156425 156422 156426 156428, overlap 156422 156441 TTATTGTAAAATAGA GAGTTTT TAT AAAACTC CTTATATATAAGAGA secE 156550 - 156750 + | preprotein translocase subunit SecE nusG 156766 - 157344 + | transcription antitermination protein NusG rplK 157477 - 157914 + | 50S ribosomal protein L11 rplA 157917 - 158633 + | 50S ribosomal protein L1 rplJ 158721 - 159230 + | 50S ribosomal protein L10 rplL 159419 - 159796 + | 50S ribosomal protein L7/L12 TERM 88 160019 - 160050 + F 77 -3.1 -5.63517 | overlap 160039 CTTAAAATCTAAAAA GCCTTATTTTAGT GATTAA ATTTGAATAAGGC TTTTTTATTTAAAAA TERM 89 160973 - 160991 + G 74 -9 -3.24289 | overlap 160982 AAGTTATGCAGCTCC TCTTAAAG TTA CTTTAAGA TTAAGTATTTGGGAT TERM 90 161934 - 161914 - g 72 -4.1 -5.06414 | opp_overlap 161918, overlap 161918 TTGGGCGAATAAAAA TGAATTCTA GGT TAGAATTGA ATATTTCTGAAGAAG TERM 91 162286 - 162312 + G 76 -9.4 -3.15544 | opp_overlap 162278 162283 162286 TAACTCATAAAAGAA GACTTTCAGCCC TTG GGCCTGGAGGTC TTAGTCGAGATCGAG TERM 92 164097 - 164083 - g 90 -10 -3.91858 | opp_overlap 164077, overlap 164072 GACAGATTTTAGAAA CCCATC TTG GATGGG CATCAATAAATTTAG rpoB 160650 - 164774 + | DNA-directed RNA polymerase subunit beta RP141 164931 - 169049 + | DNA-directed RNA polymerase subunit beta' TERM 93 169252 - 169226 - f 100 -15.4 -4.65838 | opp_overlap 169226 TACACATTGTAAAAA GCCTATAAAAAC TTA GTTTTTATAGGC TTTTTTTCTTATTTC TERM 94 169226 - 169252 + F 100 -15.4 -6.01369 | opp_overlap 169226 TACACATTGTAAAAA GCCTATAAAAAC TTA GTTTTTATAGGC TTTTTTTCTTATTTC TERM 95 170573 - 170585 + G 70 -4.1 -5.00884 | overlap 170572 AGTCAAAAAATTAAT TGCTG AGG CAGTA TTTTTTACAAGAGAT RP142 170040 - 171542 + | leucyl aminopeptidase RP143 171634 - 172428 + | hypothetical protein RP144 172527 - 172961 + | hypothetical protein aspS 173034 - 174851 + | aspartyl-tRNA synthetase RP146 177259 - 175421 - | hypothetical protein TERM 96 176695 - 176712 + g 76 -2.6 -5.51402 | opp_overlap 176695 CATTAGCAACATAAC CAGCTG AGATTC CTGCTG TTTTTTTCCCTGTCT TERM 97 176930 - 176954 + g 88 -4.4 -5.70522 | TATTTCCCTTAATTT CTTGTTTTTA TCTCC TGGAAACAAG TTTTTTATTATTGTT TERM 98 177279 - 177251 - G 91 -9 -4.78752 | opp_overlap 177255 177272 177275, overlap 177255 ATGATAATGCAAAAA CAAAGTCATGGA ATAAA TTCATGACTTTG CAGAAAGTTATTAAC TERM 99 177275 - 177255 - G 70 -4 -4.91473 | opp_overlap 177255 177272, overlap 177251 TAATGCAAAAACAAA GTCATGGA ATAAA TTCATGAC TTTGCAGAAAGTTAT RP147 178009 - 177299 - | hypothetical protein RP148 178919 - 178200 - | dihydrodipicolinate reductase TERM 100 178387 - 178400 + g 81 -3.9 -5.56112 | opp_overlap 178387 CCCCCACGCAGTGAA GAAAT ACCT ATTTC TTTTTTACTTTTTAT RP149 179645 - 179160 - | hypothetical protein RP150 180355 - 179630 - | amino-acid ABC transporter binding protein (yqiX) gatB 181971 - 180520 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 101 182031 - 181992 - R 100 -11.8 -5.35222 | opp_overlap 182002 182006, overlap 181994 181995 AAAACCTATAAAAAA TACTCAATTAGAAATTAC TAAG GTAATTTCTAATTGAAAA ATACTGCAGAAATCA TERM 102 182029 - 181994 - R 100 -14.4 -4.28383 | opp_overlap 182002 182006, overlap 181992 181995 AACCTATAAAAAATA CTCAATTAGAAATTAC TAAG GTAATTTCTAATTGAA AAATACTGCAGAAAT TERM 103 182028 - 181995 - R 100 -15.7 -3.15403 | opp_overlap 182002 182006, overlap 181994 181992 ACCTATAAAAAATAC TCAATTAGAAATTAC TAAG GTAATTTCTAATTGA AAAATACTGCAGAAA TERM 104 182048 - 182058 + r 82 -5.4 -5.55695 | opp_overlap 182048, overlap 182051 TACTGCAGAAATCAA GCTT GGA AAGC TTTTTTCTATTCTTG gatA 183620 - 182139 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 105 183447 - 183459 + g 81 -9.1 -3.65542 | overlap 183446 ACCATAGTTTTGATC GGCTG CTT CAGCC TGTTTTAAAGCTAAA gatC 183925 - 183623 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 106 183883 - 183897 + g 72 -2.8 -5.4111 | TTTCAAATTTTAATC TAGCTA ATT TTGCTA TTTTTTGTGCTTCTT frr 185041 - 184481 - | ribosome recycling factor pyrH 185973 - 185245 - | uridylate kinase RP156 186294 - 185983 - | putative monovalent cation/H+ antiporter subunit E RP157 187837 - 186278 - | multidrug resistance protein B (emrB) RP158 188020 - 188223 + | hypothetical protein TERM 107 189386 - 189408 + T 75 -8.6 -3.60839 | opp_overlap 189385, overlap 189382 GAAAAACTATGTAAT GTAAAACAAT AAG GTTGTTTTAC TTGATTCTTGCTTTT RP160 191770 - 189464 - | outer membrane protein OMP1 (omp1) TERM 108 191351 - 191361 + g 85 -2.6 -5.83822 | TCCGCTACGTTTATA TATT TCT AATA TTTTTTTTACATCTA RP161 193074 - 191995 - | hypothetical protein TERM 109 192653 - 192675 + g 70 -8.4 -3.21395 | overlap 192652 CCTGCTCTTTCTGCT GGTGATGCAG CTA CTACATCGCC TATTATAGGAGGAAT nusB 193189 - 193713 + | transcription antitermination protein NusB TERM 110 194387 - 194365 - g 70 -6.5 -4.09108 | GTGAATCTACAGAAA TTTATTTAG TTGCT CTAAATAAA AAATAATAGATTTCT RP163 193710 - 194393 + | cell division protein FTSJ (ftsJ) RP164 195529 - 195404 - | hypothetical protein RP165 196689 - 195583 - | hypothetical protein TERM 111 196462 - 196489 + g 90 -10.8 -3.63627 | opp_overlap 196459 CTTATTTATAAAGGC TACAGCTTTATA ACCA TATAGAGCTGTA TTTAAACTATCACAA RP166 197229 - 196789 - | hypothetical protein RP167 197465 - 197229 - | hypothetical protein RP168 197526 - 198122 + | hypothetical protein RP169 198581 - 198309 - | hypothetical protein RP170 201655 - 198629 - | acriflavin resistance protein D TERM 112 200535 - 200523 - G 74 -6.3 -4.46854 | ATAGAAAATCCAAAA GCATA CAT TATGC TAAAAGTACCGATCA TERM 113 201687 - 201705 + H 70 -7.5 -3.43985 | opp_overlap 201686 201687 201690, overlap 201690 AACTTGATTCTAAAT TAATGCG AATAG CGCATTA TTAATATGTTATTTA TERM 114 202041 - 202055 + H 74 -5 -5.13354 | ATATTGATGTATATT TACCAG AAG TTGGTA TTTATTTTTTATAAA RP171 202119 - 202451 + | DNA-binding protein HU (hupA) TERM 115 202884 - 202906 + G 71 -7.8 -3.39429 | opp_overlap 202888, overlap 202882 ATTCTGCTGATCTTA TGAATTTGCA TGC TGCAAATGCA TGTTTAAAAATTCTT RP172 202562 - 203371 + | DNA polymerase III subunit delta' RP173 204039 - 205388 + | signal recognition particle protein TERM 116 205408 - 205442 + T 74 -8.6 -3.31144 | opp_overlap 205415, overlap 205412 205415 GAATTATTTTATGTA TCAGCAAGCCACTGTA TCA TCTAGTGGCTTGTCGA TTGTAGAAATAGAAG TERM 117 205412 - 205438 + T 79 -10.2 -2.59748 | opp_overlap 205415, overlap 205408 205415 TATTTTATGTATCAG CAAGCCACTGTA TCA TCTAGTGGCTTG TCGATTGTAGAAATA RP174 207714 - 205546 - | peptidase TERM 118 206889 - 206871 - G 72 -6.2 -4.21194 | CTTGAGTATCTAAAA TATAATTA TCG TAATTATA AAAATCTTTATCTGC TERM 119 207533 - 207543 + g 82 -5.4 -5.34632 | TTATATTCCTGCATT GCTT GCA AAGC TTTTTCTGTTTTATT RP175 207949 - 209148 + | coproporphyrinogen III oxidase TERM 120 209233 - 209265 + T 73 -8.7 -2.8352 | overlap 209232 209241 ATCATTATGAGTGAC TATTAGTAGTAGTAT TCT ATACTACTATTAACA CTTGTTGGCTTGAGC TERM 121 209241 - 209257 + T 71 -8.1 -3.07947 | overlap 209233 209232 GAGTGACTATTAGTA GTAGTAT TCT ATACTAC TATTAACACTTGTTG TERM 122 209515 - 209525 + T 73 -5.4 -4.87665 | opp_overlap 209515 209509 CACTTTAAATAACAA TCTG AAA CAGA TTTTTATCAATCCGA RP176 211674 - 210475 - | proton/sodium-glutamate symport protein (gltP) TERM 123 211338 - 211322 - G 74 -2.3 -5.65177 | ATATTTACAAAAAAA TCAATTA TAT TAAATGA AGTTCTATCTGTGGT RP177 212161 - 211712 - | hypothetical protein RP178 212599 - 212183 - | hypothetical protein RP179 213972 - 212767 - | dihydrolipoamide acetyltransferase kgd 216807 - 213997 - | alpha-ketoglutarate decarboxylase TERM 124 214577 - 214591 + g 70 -5.8 -4.26903 | GCAGGAGTAGTTGGA TATGTA ATA TACATA TTTTCCTCAGCTGCG RP182 220194 - 218530 - | DNA repair protein RECN (recN) TERM 125 218997 - 219017 + g 76 -6.9 -4.36262 | overlap 218998 TATCGTCATTACCGC TTGCAGTAG GAT CTATTGCAG TTTTGATCTCAATCT TERM 126 218998 - 219016 + g 70 -8.2 -3.21034 | overlap 218997 ATCGTCATTACCGCT TGCAGTAG GAT CTATTGCA GTTTTGATCTCAATC TERM 127 219330 - 219355 + g 71 -6.9 -3.89131 | CTTCAAGATTATATT CCTCATAGGTA AAAC TATCTAAGAGG TTTGATAATTCTTGA TERM 128 219699 - 219726 + g 70 -6.4 -4.08692 | overlap 219700 TTTCTTTCCGAGTAT TTTGCCAAATCT GATA ACATTTGGCAAG TTTTACACGAAATTC RP183 220957 - 220202 - | hypothetical protein RP184 222553 - 221441 - | DnaJ-class molecular chaperone TERM 129 222466 - 222487 + g 81 -5.9 -5.21709 | TATCAGGGTGATATT GCTTAGCTA GCTT TAGGTAAGC TTTTTTAATGTCAGC TERM 130 222499 - 222513 + g 70 -5.7 -4.28994 | AAGCTTTTTTAATGT CAGCT TGGCT AGCTG TTTTACTAACTCCTA dnaK 224559 - 222676 - | molecular chaperone DnaK TERM 131 224763 - 224745 - H 87 -10.4 -3.28791 | opp_overlap 224740 224748, overlap 224748 ATTGTGCCCCCAGAA CAATGCAT AGA ATGCATTG TCGCTGTTGTGGAAA TERM 132 225001 - 224985 - gH 79 -5.1 -5.30575 | overlap 224986 GAAAAAGCTAAAAAA GCAATCG TAA CGATTGA GACTAGAATTGCAGT TERM 133 225000 - 224986 - gH 80 -8.6 -3.75905 | overlap 224985 AAAAAGCTAAAAAAG CAATCG TAA CGATTG AGACTAGAATTGCAG RP186 224847 - 225794 + | protease DO (htrA) RP187 225757 - 226341 + | hypothetical protein RP188 227252 - 227725 + | hypothetical protein holA 227733 - 228698 + | DNA polymerase III subunit delta RP190 228833 - 229369 + | ubiquinone biosynthesis protein COQ7 (coq7) TERM 134 230109 - 230121 + G 72 -6.3 -4.3587 | CTGCAGGAGTTATCT CAGTA ATT TACTG TTTATATTCTTGGTG RP191 229940 - 230776 + | cytochrome C oxidase polypeptide III (coxC) RP192 230903 - 231289 + | hypothetical protein RP193 232175 - 231552 - | hypothetical protein dapD 232258 - 233082 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 135 233348 - 233370 + T 70 -4.3 -5.09173 | TTTTCTTGTACTAAT CTTATAGAA CATAA TTTTATAAG TTTTTTAGCATGTTA TERM 136 236130 - 236116 - T 71 -8.6 -2.9913 | opp_overlap 236115 236116 AATAAGCATTACAGA GGCATT ATA AATGCC GTATTTCCTCTGATT TERM 137 239015 - 239005 - T 81 -5.4 -5.44721 | opp_overlap 239005 ATCATTCTAAAAAAA CACT GTA AGTG TTGATGAATTAGTAT RP196 239693 - 239247 - | hypothetical protein RP197 240639 - 239698 - | hypothetical protein RP198 241711 - 240644 - | hypothetical protein RP199 242062 - 241724 - | adrenodoxin hscA 243889 - 242108 - | chaperone protein HscA TERM 138 243826 - 243838 + g 71 -4.8 -4.72986 | CAAAATCGATACCTA CTGC TATTT GCAG TTTTTGCTGAAAATC hscB 244380 - 243880 - | co-chaperone HscB rnhB 244586 - 245167 + | ribonuclease HII RP203 247216 - 245228 - | excinuclease ABC subunit B RP204 247297 - 247584 + | glutaredoxin 3 (grxC1) RP205 247683 - 249512 + | multidrug resistance transporter ATM1 TERM 139 249931 - 249919 - f 80 -3.5 -5.87996 | CAATTAATAAAAAAA TTATA AAA TATAA GGTTATTGGGTGAAA RP206 250672 - 253389 + | DNA gyrase subunit A RP207 253855 - 254058 + | hypothetical protein def 255698 - 256225 + | peptide deformylase TERM 140 256555 - 256583 + G 74 -9.5 -2.80074 | opp_overlap 256564 CCATCCGATTTACCT CGTCACAGAGGAG CGG CTCCTCTGCAGCG TACTATTATAGAGGG fmt 256222 - 257133 + | methionyl-tRNA formyltransferase TERM 141 257304 - 257283 - T 70 -4.5 -5.06414 | opp_overlap 257283 TTTTTGTAAGAAAAA TTTCACACT CTAA AGTCTGAAA TTAGTAGCTTGGTTG TERM 142 261100 - 261071 - T 70 -3.1 -5.27335 | gap 1, overlap 261078 CTTTTTAAATAAAAA TATCTAATATACTG TAA CAGTATAGTA-ATA AATATTTAATCAAGA TERM 143 261094 - 261078 - T 74 -8.1 -3.35342 | overlap 261071 AATAAAAATATCTAA TATACTG TAA CAGTATA GTAATAAATATTTAA TERM 144 261145 - 261131 - T 70 -4.4 -5.07486 | opp_overlap 261131 GATTTTTAACAAAAA TTTTAA CAT TTAAAA TTGTAAAAAGCATCT RP212 262246 - 261173 - | putative ATPase N2B (n2B) RP213 263980 - 262829 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 145 263736 - 263746 + g 81 -2.6 -5.67283 | opp_overlap 263736 AAAGCAATCCAACAA TTAT CTG ATAA TTTTTTATTTAAGTT RP214 267022 - 265376 - | ABC transporter ATP-binding protein RP215 267320 - 267592 + | hypothetical protein TERM 146 267681 - 267656 - f 73 -5.7 -4.90266 | opp_overlap 267656 GTCAGGAAGCAAAAA TATATAAAAAA TTTG CTTTTTATATA TTTTCCGGACATATA TERM 147 268953 - 268942 - g 73 -5.8 -4.67556 | ATAATATTTTAAAAA CCGT GGAT ACGG TGTCACCATTACTCG RP216 267765 - 269126 + | cytochrome D ubiquinol oxidase subunit I (cydA) TERM 148 269140 - 269197 + F 72 -8.8 -2.59191 | opp_overlap 269138 269140, overlap 269131 269129 269144 269188 AATTTGTATTATACA GCAATTTGCTTGCAGTATAAAATATT ACTCAA AATATATTGTATTGGATGCAAATTGC ATTATGACAATGTAG RP217 269220 - 270239 + | cytochrome D ubiquinol oxidase subunit II (cydB) TERM 149 270932 - 270916 - g 81 -3.7 -5.55769 | TTGTATAATAAAAAA TTTGCCA GTT TTGCAAA TACCATCAATAGTAC TERM 150 271154 - 271166 + G 95 -6.3 -5.7946 | CTGAAATGATATGGT GCTTT TTA AAAGC TTTTTTTATTAGACG RP218 270499 - 271377 + | hypothetical protein TERM 151 272503 - 272489 - g 72 -2.8 -5.39905 | ACGAAATAATAAAAA TAACTG AAA CAGTAA GTACAGAAGAGATTA RP219 271516 - 272754 + | protease RP220 272888 - 273598 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 152 273831 - 273812 - f 70 -8 -3.32448 | opp_overlap 273812 273816, overlap 273811 TTTAAAAATATAAAG TAAAGAGA ATAT TCTCTTTA TTCTTGATGGGTACA TERM 153 273812 - 273831 + F 73 -8 -3.73647 | opp_overlap 273812 273811, overlap 273816 TTTAAAAATATAAAG TAAAGAGA ATAT TCTCTTTA TTCTTGATGGGTACA TERM 154 274674 - 274649 - f 73 -2 -5.75342 | opp_overlap 274653, overlap 274653 TTTTTGCAAAAAAAA TAATTTTGAA TTTCAT TTCAAATTTA TGTTTGCTCTTGAAG TERM 155 274891 - 274879 - f 70 -6.3 -4.2748 | overlap 274877 TATCTACAAAAAATA TGCTT TTC AAGCA ATAGCAGCTTTTAAA TERM 156 276121 - 276109 - g 71 -5.5 -4.4009 | TTTTAGTTGACAAAA GCCTC TGG GAAGC TTCAGGACATTGGGC thrS 275208 - 277115 + | threonyl-tRNA synthetase TERM 157 278172 - 278140 - T 75 -9.3 -2.63089 | opp_overlap 278140 278143, overlap 278139 278137 278148 TATCATCGGAAACAC TGATTATACTCACTC TTA GAGAGAGTATAATAA TTAATTCTTCAGATA TERM 158 278140 - 278172 + T 83 -9.3 -3.54158 | opp_overlap 278140 278139 278137 278148, overlap 278143 TATCATCGGAAACAC TGATTATACTCACTC TTA GAGAGAGTATAATAA TTAATTCTTCAGATA TERM 159 278143 - 278169 + T 85 -11 -2.89971 | opp_overlap 278140 278139 278137 278148, overlap 278140 CATCGGAAACACTGA TTATACTCACTC TTA GAGAGAGTATAA TAATTAATTCTTCAG TERM 160 278897 - 278929 + T 80 -6.6 -5.00616 | opp_overlap 278897 ATCGGTAGATTATAA GTATTTATTTTAAA CTTGC TTTAATATAAATAC TTTTTTAAAAGAAAA RP222 279304 - 278948 - | hypothetical protein RP223 280553 - 279357 - | hypothetical protein TERM 161 280038 - 280055 + g 90 -4.9 -5.66989 | CAATAATTTTTTATA GTCGATA AGAT TATTGAC TTTTTTTAGTGTTTC TERM 162 280300 - 280322 + g 77 -8.6 -3.68704 | overlap 280289 280287 TATGTTCTATCTAGT TCTCTAGATA AAA TATTTAGAGA TTCTTGGAGTGTTAT TERM 163 280469 - 280487 + g 72 -6.8 -4.06487 | opp_overlap 280468 280469, overlap 280470 AAGATTTTGTAAAAC TTCCTAAT TTT ATTAGGAG TCTTTTTAGTGTTGT TERM 164 281339 - 281308 - g 78 -9.6 -3.14978 | gap 1, overlap 281296 281306 281304 281310 CAACAGCAATAGATA TAGCTGCTGCAAG AGCAGGA CTTGCAGCAGC-A GAAACAAATAAACTA TERM 165 281338 - 281310 - g 100 -14.7 -3.12353 | overlap 281296 281308 281306 281304 ACAGCAATAGATATA GCTGCTGCAAG AGCAGGA CTTGCAGCAGC AGAAACAAATAAACT RP224 280758 - 282128 + | outer membrane protein TOLC precursor (tolC) RP225 282130 - 282543 + | hypothetical protein RP226 282636 - 284390 + | hypothetical protein RP227 284585 - 286573 + | DNA topoisomerase IV subunit B RP228 286682 - 288007 + | tail-specific protease precursor (CTP) TERM 166 288708 - 288690 - g 79 -10.4 -2.96979 | overlap 288682 ATTACAAGTCATATA TTACTACC AAA GGTAGTAA TAGAAAATGAAAGTG RP229 288213 - 289706 + | histidine kinase sensor protein (barA) TERM 167 290642 - 290628 - g 71 -2.1 -5.47218 | overlap 290610 290639 CTGTATCTAAAAAAA TGACA GAAGA TGCCA AGATCAAATTTGGCT RP230 289934 - 290686 + | hypothetical protein RP231 290683 - 291345 + | hypothetical protein RP232 291372 - 292619 + | hypothetical protein rplM 292839 - 293306 + | 50S ribosomal protein L13 rpsI 293313 - 293798 + | 30S ribosomal protein S9 TERM 168 293974 - 293986 + T 78 -6.3 -5.06103 | opp_overlap 293974 TTTAAATAGAATGCA TCCAT ATT ATGGA TTTTTTAGCGGTTAT RP236 295329 - 294844 - | dinucleoside polyphosphate hydrolase pleD 296710 - 295358 - | response regulator PleD TERM 169 295468 - 295479 + g 83 -3 -5.77853 | TATATTCCGTTACTC CTAT TGAA ATAG TTTTTTTTAACGGTT TERM 170 295634 - 295646 + g 81 -6.3 -5.05782 | TGCTATTAAGTCTGT TACTC TGA GAGTA TTTTTTAAAATACGT RP238 296786 - 297352 + | elongation factor P TERM 171 297467 - 297457 - g 78 -4 -5.41746 | AATGCTGCAAAAAAA TTCT ATA AGAA ATGAAGAATTTTGCA RP239 297362 - 298099 + | extragenic suppressor protein SUHB (suhB) RP240 298317 - 298640 + | hypothetical protein RP241 298673 - 299368 + | phosphatidylserine decarboxylase RP242 299594 - 300268 + | CDP-diacylglycerol--serine O-phosphatidyltransferase (pssA) RP243 300277 - 301329 + | multidrug resistance protein A (emrA) TERM 172 301520 - 301505 - T 72 -6.2 -4.48869 | TAAAAAGAATATAAA TTATGC TAAT GCATAA TGATAGAGCATAAGT TERM 173 301650 - 301629 - T 70 -7.4 -3.71107 | GAGCAAAATTAAAGA TGCTAAAG AAGGTG CTTTAGCA GAAAATGTTATAAGT TERM 174 301730 - 301742 + T 70 -4.9 -4.90519 | ATTAATTATTACCCT TTAAC TCT GTTAA TTCTTTTTTTAGTTT RP244 301922 - 301716 - | hypothetical protein RP245 302161 - 301919 - | morphology/transcription regulator BolA family protein RP246 302216 - 303439 + | hypothetical protein TERM 175 304553 - 304583 + GF 77 -7.8 -4.08767 | opp_overlap 304561, overlap 304554 304556 TAGAATTAGATTTTG GTATTAAAGCTATT AAA AATGGCTTTAATAA TTTTAAAGGAGTAAA TERM 176 304554 - 304582 + GF 87 -11.3 -3.05046 | opp_overlap 304561, overlap 304553 304556 AGAATTAGATTTTGG TATTAAAGCTATT AAA AATGGCTTTAATA ATTTTAAAGGAGTAA TERM 177 304556 - 304580 + GF 78 -9.5 -3.08211 | opp_overlap 304561, overlap 304554 304553 AATTAGATTTTGGTA TTAAAGCTATT AAA AATGGCTTTAA TAATTTTAAAGGAGT murC 303622 - 305109 + | UDP-N-acetylmuramate--L-alanine ligase murB 305075 - 306007 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 178 306882 - 306864 - g 81 -4.6 -5.38951 | overlap 306867 AATTTATATAAAAAA TTACTGAT AGA ATCAGAAA AAATTTATAAAACAA ddl 306123 - 307088 + | D-alanine--D-alanine ligase RP250 307085 - 307888 + | cell division protein FTSQ (ftsQ) TERM 179 308034 - 308044 + F 73 -5.4 -4.91109 | ACGTTGGTGCACTCT TTGC AAT GCAA TTTTTATAATAAGAA RP251 308068 - 309303 + | cell division protein FTSA (ftsA) TERM 180 309390 - 309376 - T 89 -4.3 -6.01725 | opp_overlap 309376 AAGAAAAACAAAAAA TGCTA TAAGT TAGCA TTTTAAACGAAATTA RP252 309921 - 309430 - | hypothetical protein RP253 310432 - 309905 - | cytochrome C (cycM) TERM 181 310929 - 310910 - R 80 -9.4 -3.14211 | opp_overlap 310913, overlap 310913 ATGTGCTTTTATTAA TAATGACG ATTT CGTCATTA AATATATATTAAGAA lpxC 312146 - 311280 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 182 312223 - 312201 - R 86 -9.4 -4.17516 | opp_overlap 312204 312206, overlap 312204 TGCAAATTATACAAA TAATATTTTG TTA CAAAATATTA CATAATCACCATTGT TERM 183 312220 - 312204 - R 71 -6.7 -4.19324 | opp_overlap 312204 312206, overlap 312201 AAATTATACAAATAA TATTTTG TTA CAAAATA TTACATAATCACCAT TERM 184 312314 - 312339 + r 100 -12.1 -3.9392 | opp_overlap 312307 312317 312319 GAACATAAGGTCCAA TTACAGATACT ATAT AGTATCTGTAA TTATTTCCAGTAGAC TERM 185 312336 - 312317 - R 75 -9.4 -2.74019 | opp_overlap 312314, overlap 312307 312319 CATAAGGTCCAATTA CAGATACT ATAT AGTATCTG TAATTATTTCCAGTA RP255 313517 - 312372 - | hypothetical protein TERM 186 312523 - 312502 - G 82 -8.7 -3.97388 | overlap 312515 ACATGGGATGATAAA GCACCAGCA TATA TGCCGATGC TGCACATTGAAAAAT TERM 187 313226 - 313198 - G 72 -6.3 -4.23434 | opp_overlap 313220, overlap 313208 313213 GAAAATATTCCAAAA TTAATTAAAATAA AAT TAATTTTAATTAA AGTATAATTATTTAA TERM 188 314473 - 314460 - g 74 -2.4 -5.64873 | TGTAATAAGAAAAAA CCAA GTATTA TTGG TGCAAGTTACTAAGG RP256 313933 - 315984 + | ribonuclease E (rne) TERM 189 316041 - 316006 - f 76 -4.4 -5.37345 | gap 1, opp_overlap 316016, overlap 316009 316010 316016 TGCAACGATAAAAAA TAACTAAAAATATCAAT ATT ATTGATATTTTTA-TAA CTGTGTTACGTCAAT TERM 190 316039 - 316009 - f 88 -8.6 -4.75967 | opp_overlap 316016, overlap 316006 316010 316016 AACGATAAAAAATAA CTAAAAATATCAAT ATT ATTGATATTTTTAT AACTGTGTTACGTCA TERM 191 316038 - 316010 - f 95 -12.1 -3.4314 | opp_overlap 316016, overlap 316009 316006 316016 ACGATAAAAAATAAC TAAAAATATCAAT ATT ATTGATATTTTTA TAACTGTGTTACGTC TERM 192 316016 - 316032 + F 78 -6.7 -4.90455 | opp_overlap 316010 316009 316006 316016 AAAAATAACTAAAAA TATCAAT ATT ATTGATA TTTTTATAACTGTGT TERM 193 316032 - 316016 - f 83 -6.7 -5.10004 | opp_overlap 316016, overlap 316010 316009 316006 AAAAATAACTAAAAA TATCAAT ATT ATTGATA TTTTTATAACTGTGT RP257 316592 - 317596 + | cytochrome C oxidase assembly protei (coxW) RP258 317723 - 318634 + | hypothetical protein TERM 194 319321 - 319344 + G 83 -3.3 -5.67063 | gap 1, opp_overlap 319321, overlap 319324 ATGATTATCGAAAAA GTT-GCTAAA AAAGA TTTAGCTAAC TTTTTTTATGATGAA RP259 318691 - 319935 + | penicillin-binding protein 4* (pbpE) RP260 319944 - 320729 + | exodeoxyribonuclease III (xthA1) RP261 320822 - 321802 + | pyruvate dehydrogenase E1 component, alpha subunit precursor (pdhA) TERM 195 322455 - 322465 + G 78 -4 -5.40072 | overlap 322448 AGCTATTAGGGATGA TAAC CCA GTTA TTTTTTTAGAGAACG TERM 196 322729 - 322718 - g 86 -3 -5.89827 | opp_overlap 322718 AATCAGTAAAAAAAA CTAA TCGT TTAG TTATAGTAGAAGAAG TERM 197 322891 - 322879 - g 70 -4.1 -4.91712 | GTTAATTTAGAAAAA TTAGC TAT GCCAA GTGCAAATGATTTAA RP262 321964 - 322944 + | pyruvate dehydrogenase subunit beta RP263 325301 - 323484 - | hypothetical protein TERM 198 325758 - 325771 + H 81 -5.3 -5.28561 | opp_overlap 325756 325758, overlap 325763 TTAAGAAAAAATATA GCTTT TAAT AAAGC TTTTTATTATATATT TERM 199 326003 - 325987 - H 71 -5.3 -4.67173 | opp_overlap 325996, overlap 325996 CAATCCAAAAAATAA TTAAAAA TGC TTTTTAA AAAGATTGCTTAGTA TERM 200 326590 - 326560 - g 74 -6.2 -4.43351 | opp_overlap 326562 326567 326568, overlap 326557 326562 326568 326583 ATATGCTAAAAATAA CTTGAATATCACTT CCG AAGTGACTTTCATG TTGAATGAAAGGTTA RP264 326075 - 326629 + | hypothetical protein TERM 201 326703 - 326685 - f 70 -4.6 -5.0666 | opp_overlap 326685, overlap 326681 TATGCAAAAAATAAA CAATGGTA ATT TAACATTG GTTTACGAAAAGATG RP265 326732 - 328183 + | isocitrate dehydrogenase RP266 328274 - 328594 + | putative monovalent cation/H+ antiporter subunit G TERM 202 328972 - 328958 - g 73 -5.8 -4.64361 | TAAAAAATATCAAAA GAATAA ATA TTATTC CAGCAAGTGTAATAT RP267 328678 - 329724 + | putative monovalent cation/H+ antiporter subunit B TERM 203 329884 - 329904 + G 72 -4.9 -4.95758 | overlap 329885 TTTTTCAGTAATTTG TTTATTAAT TTC ATTAATAAG TTTTTCTACTATAAT RP268 329717 - 330364 + | heme exporter protein B (ccmB) RP269 330441 - 330899 + | hypothetical protein RP270 330916 - 331449 + | cytochrome B6-F complex IRON-sulfur subunit (petA) TERM 204 331600 - 331638 + G 78 -9.1 -3.27498 | TAGGGTCTATTGCTG GTATTGCATTGGTGATT CAGAT AATCACTGGTGTAATAC TTGCTATGCACTATA TERM 205 332640 - 332622 - g 72 -4.6 -4.93696 | opp_overlap 332622 332632 GGTAAATATGAAAAA CCTTTG CCCTTAC CAAAGG TATTATAAGACTCTG RP271 331452 - 332648 + | cytochrome B (petB) RP272 333077 - 333838 + | cytochrome C1, HEME protein precursor (fbcH) TERM 206 333901 - 333917 + F 75 -6.7 -4.43909 | overlap 333898 AAAAAATGATTCTGT GAAATAA GCA TTATTTC TTATTTTGTTAAAAT RP273 334368 - 334859 + | HEAT shock protein (hsp22) prfB 336257 - 335147 - | peptide chain release factor 2 RP275 336431 - 338233 + | GTP-binding protein LepA RP277 340077 - 339391 - | hypothetical protein TERM 207 339485 - 339505 + g 85 -4.7 -5.60864 | opp_overlap 339488 339489, overlap 339488 339489 TCGACATAGTAAGAA AAATGCTTC ATA GAAGCGTTA TTTTTTTCATGTATA TERM 208 339488 - 339502 + g 80 -6.4 -4.86226 | opp_overlap 339488 339489, overlap 339485 339489 ACATAGTAAGAAAAA TGCTTC ATA GAAGCG TTATTTTTTTCATGT TERM 209 339502 - 339488 - G 75 -4.2 -5.17744 | opp_overlap 339488 339485 339489, overlap 339489 ACATAGTAAGAAAAA TGCTTC ATA GAAGCG TTATTTTTTTCATGT TERM 210 339501 - 339489 - G 72 -7.7 -3.6902 | opp_overlap 339488 339485 339489, overlap 339488 CATAGTAAGAAAAAT GCTTC ATA GAAGC GTTATTTTTTTCATG TERM 211 339489 - 339501 + g 71 -7.7 -3.49295 | opp_overlap 339489 339488, overlap 339488 339485 CATAGTAAGAAAAAT GCTTC ATA GAAGC GTTATTTTTTTCATG RP278 341215 - 340100 - | hypothetical protein RP279 342434 - 342601 + | hypothetical protein RP280 343887 - 342736 - | rod shape-determining protein RODA (rodA) RP281 345988 - 343934 - | protease II TERM 212 344736 - 344763 + g 72 -6.4 -4.30833 | gap 1, overlap 344739 344740 ATTCTTTCTACTTTA TACTCTTCTGGAT TAA AGCCAGAAG-GTA TTTCTTGGTCCTTTA RP282 347616 - 346075 - | putative monovalent cation/H+ antiporter subunit D TERM 213 347979 - 347958 - R 70 -5.9 -4.36914 | opp_overlap 347957, overlap 347960 TTTTTTGCTATAAAA CTCTTGAAT ATTT ATTCAAGTG CTGCGTTTATATCAT TERM 214 348164 - 348209 + r 100 -14.7 -2.63596 | gap 1, opp_overlap 348166 348169 348172, overlap 348162 348166 348169 348172 TGAGCATCACTGATA CATAATAATATATACATAAATA TGC TA-TTATGTATATATTATTATG TAATATAAGATAAAA TERM 215 348207 - 348166 - R 88 -11.5 -2.92642 | gap 1, opp_overlap 348162 348164 348166 348169 348172, overlap 348169 348172 AGCATCACTGATACA TAATAATATATACATAAATA TGC TA-TTATGTATATATTATTA TGTAATATAAGATAA TERM 216 348166 - 348207 + r 88 -11.5 -2.85999 | gap 1, opp_overlap 348166 348169 348172, overlap 348162 348164 348169 348172 AGCATCACTGATACA TAATAATATATACATAAATA TGC TA-TTATGTATATATTATTA TGTAATATAAGATAA TERM 217 348169 - 348204 + r 79 -8.8 -3.57651 | gap 1, opp_overlap 348166 348169 348172, overlap 348162 348166 348164 348172 ATCACTGATACATAA TAATATATACATAAATA TGC TA-TTATGTATATATTA TTATGTAATATAAGA TERM 218 348204 - 348169 - R 79 -8.8 -3.60792 | gap 1, opp_overlap 348162 348169 348166 348164 348172, overlap 348166 348172 ATCACTGATACATAA TAATATATACATAAATA TGC TA-TTATGTATATATTA TTATGTAATATAAGA RP283 349665 - 348205 - | putative monovalent cation/H+ antiporter subunit D RP284 351015 - 349717 - | putative monovalent cation/H+ antiporter subunit D TERM 219 349827 - 349806 - G 80 -8.9 -3.72152 | opp_overlap 349811, overlap 349811 TAAGTAAAATGATAA CAAAATCTA ATAG TAGATTTTG CGCTAGTAATATTTC TERM 220 350382 - 350360 - G 76 -2.8 -5.5112 | opp_overlap 350361, overlap 350361 350362 CCTATTAAGAAAAAA CCTATAACTA TAG TAATTATACG GAGCTTAGTGTATTC RP285 351773 - 351333 - | putative monovalent cation/H+ antiporter subunit C TERM 221 351553 - 351575 + g 76 -9.2 -3.14989 | opp_overlap 351549, overlap 351552 351549 AAAAATAGTAATACT GGACTTTGAA ATA TTCCAAGTCC TATAATTTTATGAAT RP286 352539 - 351787 - | conjugal transfer protein TrbG precursor RP287 353284 - 352541 - | VirB8 RP288 353689 - 353868 + | hypothetical protein RP289 353919 - 354650 + | hypothetical protein RP290 354637 - 355110 + | VIRB9 protein precursor (virB9) RP291 355193 - 356644 + | VIRB10 protein (virB10) RP292 356641 - 357645 + | VIRB11 protein (virB11) RP293 357947 - 359722 + | VIRD4 protein (virD4) TERM 222 360203 - 360215 + G 72 -6.3 -4.35461 | opp_overlap 360203 360201 TCGGGACAAAAATTA TTGCT AAT AGCAA TTTTAGTGATGTTGG RP294 359731 - 361143 + | guanosine pentaphosphate phosphohydrolase (gppA) RP295 362863 - 363759 + | hypothetical protein RP296 363743 - 364567 + | hypothetical protein TERM 223 364894 - 364904 + G 71 -6.8 -3.89956 | overlap 364899 ATTGAAAATGGTTTT CCGA CTA TCGG TTTGATATATCATCC RP297 364570 - 365358 + | 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase RP298 368148 - 365473 - | DNA mismatch repair protein TERM 224 367492 - 367478 - G 90 -7.2 -5.47399 | TTAATTGCAAAAAAA CTATCA ACC TGATAG GTAATACGACAATTA RP299 368791 - 368357 - | ribose-5-phosphate isomerase B RP300 369015 - 369647 + | outer membrane antigenic lipoprotein B precursor (nlpD) thyX 370353 - 371237 + | FAD-dependent thymidylate synthase TERM 225 372420 - 372435 + G 79 -10.4 -2.93747 | overlap 372411 CGCATCTCCTAGCTG GTCGCC TAGA GGCGAC TATATAGCATTTACT tolB 371407 - 372738 + | translocation protein TolB TERM 226 372908 - 372920 + T 91 -4.9 -6.04324 | GATTTCTCTATTATT GTTTA AAA TAAAC TTTTTTATTTTTTCA RP303 373768 - 372887 - | RNA polymerase factor sigma-32 TERM 227 374101 - 374073 - g 90 -11.1 -3.65827 | opp_overlap 374055 TAATGTTGATCCAAA TCTACCTTGGCAT TTT ATCCCAAGGCAGA AAAGAGTTCAAATTG RP304 373858 - 374394 + | cytochrome C oxidase assembly protein RP305 375432 - 374464 - | hypothetical protein trmU 375650 - 376726 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 228 378053 - 378065 + G 74 -7.7 -3.73414 | opp_overlap 378052 378053 GATAAAATTACCAAC TGCTC AAA GAGCA TTTAAATGTCCTATA RP307 376857 - 378269 + | cationic amino acid transporter-1 (atrc1) hisS 378350 - 379600 + | histidyl-tRNA synthetase RP309 380255 - 380980 + | TOLQ protein (tolQ) RP310 380980 - 381411 + | TOLR protein (tolR) RP311 382161 - 381676 - | hypothetical protein RP313 384774 - 383446 - | proline/BETAIN transporter (proP2) TERM 229 384036 - 383986 - G 71 -8.6 -2.78384 | opp_overlap 383985 383999 384011, overlap 383999 384001 384011 CGGTGGTCTAGCACA CTGGATAAAAAAATACCAAATG GAAGTGG CATTTGGCACTTTTTGATCTAG GATATCTTTATCAAT TERM 230 384023 - 383999 - G 86 -5.1 -5.626 | opp_overlap 383999 383985 384011, overlap 383986 384001 384011 CACTGGATAAAAAAA TACCAAATG GAAGTGG CATTTGGCA CTTTTTGATCTAGGA TERM 231 384021 - 384001 - G 71 -5.5 -4.45201 | opp_overlap 383999 383985 384011, overlap 383999 383986 384011 CTGGATAAAAAAATA CCAAATG GAAGTGG CATTTGG CACTTTTTGATCTAG RP314 386437 - 384902 - | alkaline protease secretion protein AprE RP315 388336 - 386585 - | alkaline protease secretion ATP-binding protein AprD RP316 389360 - 388344 - | aspartate-semialdehyde dehydrogenase RP317 389715 - 389353 - | protein kinase C inhibitor 1 (pkcI) RP318 390204 - 389854 - | hypothetical protein TERM 232 390150 - 390163 + g 81 -2.5 -5.80817 | opp_overlap 390150, overlap 390150 AACCTTCTTCAAGAA TAATA AAAT TATTA TTTTTTTGTGTTGAG RP319 390469 - 391017 + | ATP-dependent protease peptidase subunit TERM 233 392302 - 392290 - g 71 -4.9 -4.83715 | opp_overlap 392290 AAGTCAAAAAAATAA TTATC GAT GATAA ATTTGTGGAAAATCA hslU 391014 - 392366 + | ATP-dependent protease ATP-binding subunit lpxB 393026 - 394168 + | lipid-A-disaccharide synthase TERM 234 394486 - 394504 + F 72 -6.2 -4.46926 | ATTTTTGATTTGTAA TAAAAATT CTA AATTTTTA TTTTATAGTAGCATA TERM 235 395146 - 395136 - g 72 -5.4 -4.71426 | TTTGGAGCAATAAAA GGTA TAA TACC TGAAGGTTTTTTAAT RP322 394713 - 395735 + | hypothetical protein cyaY 395728 - 396042 + | frataxin-like protein RP324 396756 - 397340 + | hypothetical protein TERM 236 397647 - 397668 + T 78 -8.1 -3.89435 | overlap 397645 TTACAGTTATGTGTT GATGCATCA ATGT TGATGTATC TTTAGATTATTTAGG TERM 237 397741 - 397731 - T 71 -5.4 -4.57569 | TTAGTTTTTCAAAAA TGCT TCA AGCA ACAAAAGACGAACTG TERM 238 398566 - 398551 - T 70 -7.6 -3.35679 | TGTTTTGATGTATAA CATTGC TCAA GCAATG GAGATTAATCGTCTT gltX 399900 - 398557 - | glutamyl-tRNA synthetase RP326 402338 - 400008 - | DNA topoisomerase I TERM 239 400318 - 400331 + g 70 -3.7 -5.08169 | opp_overlap 400318 CCAAGCTGAATATAA GGTCC GTAA GGTCC TTTTTTAAGATATAT TERM 240 401280 - 401301 + g 71 -2.3 -5.38497 | gap 1, overlap 401281 401290 ATTTGTCGGTCTTAT TGCTTCATGA GCT TCTTGA-GCA TTTTTTACTTTGGAT RP327 403968 - 403366 - | thioredoxin peroxidase 1 (tdpX1) RP328 404985 - 404050 - | hypothetical protein TERM 241 404534 - 404520 - G 70 -8.6 -2.61681 | overlap 404519 CTTTAATTTCATAAC GCATAC ATT GTATGC CCCAATTTATAGCAG RP329 406990 - 405428 - | hypothetical protein RP330 407026 - 407496 + | Holliday junction resolvase-like protein RP331 407540 - 407707 + | hypothetical protein RP332 408464 - 409318 + | hypothetical protein TERM 242 409818 - 409807 - g 79 -7.2 -4.44797 | opp_overlap 409807 TTAGCAATAGCAAAA GCGC GTAT GCGC TCTCCTGGTGAGACG RP333 409351 - 410376 + | capsular polysaccharide biosynthesis protein CapD RP334 410369 - 411499 + | putative UDP-N-acetylglucosamine 2-epimerase (rffE) TERM 243 411762 - 411774 + G 71 -4.9 -4.76644 | opp_overlap 411773 ATTGCCAGATAAATC TATTG ACT CAATA TTTTTAATAGATGTT TERM 244 411872 - 411882 + G 77 -8.2 -3.85698 | opp_overlap 411868 AAATTATAATATTTA CCCC TTT GGGG TTTATGCCACAAGAA TERM 245 411968 - 411952 - g 75 -7.3 -4.06384 | TGGCAAGAGCATAAA TCCGGAT GGT ATCCAGA AGATTTTCCTGGATG TERM 246 412084 - 412074 - g 72 -2.6 -5.4833 | TTATGCAATAAAAAA TATA GTA TATA CAGAAAATTATTTTA RP335 411496 - 412617 + | hypothetical protein RP336 412650 - 413873 + | hypothetical protein TERM 247 414822 - 414833 + G 86 -7.2 -5.31275 | TTACATATTTTGCTT CCGG TAGA CCGG TTTTTTGTCATGCAC RP337 413870 - 415081 + | hypothetical protein RP338 415062 - 416105 + | hypothetical protein RP339 416102 - 417058 + | minor teichoic acids biosynthesis protein ggab (ggab) RP340 417034 - 418050 + | hypothetical protein RP341 419088 - 418063 - | hypothetical protein TERM 248 418681 - 418704 + g 70 -3.9 -5.02074 | TGCACTTTTTGACAT TTTGTATGC CTCATT GCTTACAAA TTTTTTGGCAAATAA RP342 419937 - 419110 - | hypothetical protein RP343 420705 - 419947 - | hypothetical protein TERM 249 421023 - 421011 - g 81 -4.9 -5.4148 | GAAATAATCAAAAAA TATCA TGT TGATA TAGTGCATACAAGAT RP344 420738 - 421907 + | CAPM protein (capM1) TERM 250 421985 - 422006 + T 73 -8.9 -2.80493 | opp_overlap 421985, overlap 421984 421982 421987 TCACTATTTATATAA GACTATAAA ACCA TTTATAGTC ATTATGTATTAAAAG TERM 251 422006 - 421985 - T 79 -8.9 -3.52896 | opp_overlap 421985 421984 421982 421987 TCACTATTTATATAA GACTATAAA ACCA TTTATAGTC ATTATGTATTAAAAG rpsD 423765 - 423148 - | 30S ribosomal protein S4 RP346 423878 - 424810 + | protoheme IX farnesyltransferase TERM 252 425352 - 425364 + T 73 -3.5 -5.5943 | overlap 425340 TTAGGATTAAAGCAT TTATT TAA AATAA TTTTTTTAATCCTTT RP347 427863 - 425356 - | outer membrane assembly protein (asmA) TERM 253 425870 - 425894 + g 72 -6.6 -4.11906 | gap 1 TTATCAATGGCATGT GCG-ATTTGAT TTAA ATCAAATCCGC TTATTTCTCCGTTAT rimM 429028 - 428531 - | 16S rRNA-processing protein RP349 429094 - 431700 + | hypothetical protein xseB 431735 - 431977 + | exodeoxyribonuclease VII small subunit RP351 433227 - 432574 - | 3-methyladenine DNA glycosylase TERM 254 433455 - 433477 + rH 73 -8 -3.71915 | overlap 433453 TAATCAATATTTTTC TTATATTTAA GAT TTAAATATAA TTCATATTTTTTTAG RP351a 433751 - 433479 - | hypothetical protein RP352 433564 - 433695 + | hypothetical protein RP353 434253 - 433720 - | NADH dehydrogenase subunit E TERM 255 434160 - 434175 + gr 71 -3.2 -5.19212 | overlap 434162 GTATTGCACTTCTTT TCCCCT CTGG AGGGTA TTTTTTGATAATAGT TERM 256 434162 - 434173 + gr 70 -5.8 -4.22314 | overlap 434160 ATTGCACTTCTTTTC CCCT CTGG AGGG TATTTTTTGATAATA RP354 435489 - 434320 - | NADH dehydrogenase subunit D TERM 257 435541 - 435586 + r 100 -13.9 -3.01416 | gap 1, opp_overlap 435540 435555, overlap 435543 435555 TATATTTTATCACAT GT-TTTAGTTAAAAATATCAAT AAT ATTGATATTTTTAACTAAATGC TGTGTATAAGTCATG TERM 258 435543 - 435583 + r 100 -18.9 -2.73275 | opp_overlap 435540 435555, overlap 435541 435555 TATTTTATCACATGT TTTAGTTAAAAATATCAAT AAT ATTGATATTTTTAACTAAA TGCTGTGTATAAGTC TERM 259 435571 - 435555 - R 77 -6.7 -4.65895 | opp_overlap 435543 435541 435555, overlap 435540 TGTTTTAGTTAAAAA TATCAAT AAT ATTGATA TTTTTAACTAAATGC TERM 260 435555 - 435571 + r 77 -6.7 -4.67353 | opp_overlap 435555 435540, overlap 435543 435541 TGTTTTAGTTAAAAA TATCAAT AAT ATTGATA TTTTTAACTAAATGC RP355 436292 - 435699 - | NADH dehydrogenase subunit C RP356 436794 - 436270 - | NADH dehydrogenase subunit B RP357 437170 - 436799 - | NADH dehydrogenase subunit A RP358 438518 - 437301 - | hypothetical protein RP359 438986 - 438519 - | hypothetical protein xerD 439584 - 440519 + | site-specific tyrosine recombinase XerD RP362 440585 - 440836 + | hypothetical protein TERM 261 441165 - 441155 - g 72 -4 -5.08824 | TTTTTATTTAAAAAA CTTT GCA AAAG AGGAATTACAGAAAG RP363 440943 - 441599 + | hypothetical protein TERM 262 442180 - 442168 - g 73 -3.5 -5.18726 | GTTTTACAAGAAAAA TTTTA TCT TAAAA GAAATTCTAAAGATT RP364 441736 - 442896 + | hypothetical protein RP365 443872 - 443087 - | enoyl-(acyl carrier protein) reductase lnt 443948 - 445438 + | apolipoprotein N-acyltransferase TERM 263 446917 - 446897 - f 72 -4.7 -5.07053 | opp_overlap 446897 446906, overlap 446901 AAGTATTGTAAAAAA GTCATCCTA TTT TAGGAAAAC TATTATTATTTATTG TERM 264 447004 - 447014 + F 70 -4 -5.1848 | opp_overlap 447004 447013 AGAACTCTTGAGTAA TCTT TAT AAGA TTTTTTAAATTGCTT RP367 447284 - 448195 + | hypothetical protein TERM 265 448571 - 448603 + G 70 -4.3 -4.85396 | opp_overlap 448574, overlap 448574 TATATTAGATCTAGA CAATTGGTTAGTA CCTTTAA TACTAATCAATAG TTTTATTATAGTTAT RP368 448206 - 449048 + | hypothetical protein TERM 266 449770 - 449747 - g 70 -6.2 -4.17048 | gap 1, opp_overlap 449747 449757 TTTTCCCTAAAAGAA CTTAGAGTGAT CTT ATCA-TCTAAG ATTAATATCGAAGGT RP369 449045 - 449788 + | ABC transporter ATP-binding protein RP370 451417 - 450899 - | hypothetical protein TERM 267 453016 - 453040 + G 78 -10.3 -2.78384 | opp_overlap 453016 453018 453020, overlap 453018 453020 GATTATTTTACATGA TATATTAGATA TGT TATCTAATATA TCTGATCAAACAGAA TERM 268 453040 - 453016 - g 78 -10.3 -2.63913 | opp_overlap 453016 453018 453020, overlap 453018 453020 GATTATTTTACATGA TATATTAGATA TGT TATCTAATATA TCTGATCAAACAGAA lysK 451670 - 453256 + | lysyl-tRNA synthetase TERM 269 453678 - 453689 + G 70 -5.8 -4.3587 | GCAGCCCTCTACTTG GTCC TAGC GGAC TTTCTATTGTTGCTG RP372 453287 - 454258 + | hypothetical protein TERM 270 454829 - 454817 - g 73 -3.5 -5.24796 | CTTATAGAAGAAAAA TTAAA ATC TTTAA TGGATATACCAGTAT RP373 454361 - 456664 + | malic enzyme TERM 271 457028 - 457048 + G 84 -6.9 -5.24129 | opp_overlap 457027 ATAATAATCAAGATT TTATAGCAG AAA CTGCTAAAA TTTTTTATGAAGAAA RP374 456913 - 458301 + | protein transport protein SEC7 (sec7) TERM 272 458312 - 458343 + F 73 -7.6 -3.75437 | opp_overlap 458319, overlap 458313 TATAATTCGTCATAG CTTATAATACTAAT AATT ATTAGTATTATAAA TTTGATACAATGATT TERM 273 458313 - 458342 + F 85 -11.1 -2.8478 | opp_overlap 458319, overlap 458312 ATAATTCGTCATAGC TTATAATACTAAT AATT ATTAGTATTATAA ATTTGATACAATGAT TERM 274 459709 - 459727 + G 77 -9 -3.61219 | ATTTAACATGTTCTG TCCTATTA TAT TAATAGGA TTTGCAGCATTTTAT RP375 458753 - 459973 + | proline/betaine transporter (proP3) TERM 275 461136 - 461154 + T 100 -7.6 -5.33405 | TTTATTCTTCTTTTT TATTATTC CTA GAATAATA TTTTTATTTAATGAA RP376 462463 - 461519 - | malate dehydrogenase TERM 276 463168 - 463156 - R 76 -6.3 -4.80959 | opp_overlap 463155 463156 TAATCTAGAATAAAA TCTGA AAA TCAGA ATTTTTTACTTAATT RP377 464822 - 463299 - | ADP,ATP carrier protein RP378 466813 - 465053 - | CTP synthetase TERM 277 466432 - 466413 - G 72 -4.4 -5.05116 | gap 1 TCACAAATAATAAAA TCAAA-ACC ATT GGTATTTGA CATTATAAAATCTTT RP379 467560 - 466820 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 278 467914 - 467898 - H 72 -8.7 -2.63301 | overlap 467900 CAGATGGTTAGAGCA CACGCCT GAT AAGCGTG AGGTCGGAAGTTCAA TERM 279 468658 - 468672 + G 71 -5.7 -4.51799 | CCTTTTGGACTTCTT CGTGA AATTG TCACG TTTTATACGTTTGAT TERM 280 469268 - 469285 + G 75 -5.6 -4.82128 | opp_overlap 469267 ATCATATGAAATATC TAGGAG GGATTG CTCCTA TTTTATGTTTAGTAG RP382 468367 - 469899 + | hypothetical protein TERM 281 470013 - 470027 + G 70 -8.6 -2.57344 | opp_overlap 470022, overlap 470012 TAATAAATAGCTATA CGGAAA TAT TTTCCG GTTATGGAAAGGATG folE 469892 - 470464 + | GTP cyclohydrolase I RP384 470606 - 471904 + | prolyl-tRNA synthetase TERM 282 472700 - 472710 + F 76 -2.6 -5.9362 | ACATGAAAAATTTTA TAAA ATA TTTA TTTTTTTCTGTTTTA ruvA 472908 - 473507 + | Holliday junction DNA helicase motor protein ruvB 473564 - 474592 + | Holliday junction DNA helicase B TERM 283 475341 - 475327 - gf 77 -7.2 -4.31397 | AGTTTTACAAAAGAA CATCTA AGT TAGATG CAATGGTTTCGCCAA RP387 474585 - 476015 + | transport ATP-binding protein MsbA RP388 475982 - 476347 + | hypothetical protein TERM 284 477284 - 477294 + F 71 -5.4 -4.60886 | GTTGTCAAATTTTCT GCTT TTA AAGC TTTATTTAATTATAT TERM 285 477811 - 477782 - g 73 -8.7 -3.05963 | opp_overlap 477779 ATCTTTATTTTAATA TTTTGCTTTGCTC CTAT AAGCGAAGCAAAA AAAATTGTAAAAAAT RP389 477740 - 478660 + | penicillin-binding protein DACF precursor (dacF) RP390 479728 - 478766 - | rare lipoprotein A precursor (rlpA) RP391 480347 - 479706 - | hypothetical protein RP392 481066 - 480524 - | intracellular septation protein A RP393 481947 - 481099 - | hypothetical protein RP394 482333 - 481956 - | hypothetical protein RP395 483685 - 482684 - | hypothetical protein TERM 286 482938 - 482916 - G 74 -8.6 -3.35679 | opp_overlap 482904, overlap 482921 CCTTTTGACTTAGAA TCAAATAGTA TTT TACCATTTGA TAAACGAGTGATTTT TERM 287 483420 - 483448 + g 74 -7.7 -3.81879 | opp_overlap 483427, overlap 483421 483427 GGTCCATTGAGAGGT TGTAAAATATTTT CAA AAAATATTTTACC TTCTTCAGTTTTAAG TERM 288 483421 - 483447 + g 85 -11.2 -2.88404 | opp_overlap 483427, overlap 483420 483427 GTCCATTGAGAGGTT GTAAAATATTTT CAA AAAATATTTTAC CTTCTTCAGTTTTAA RP396 483826 - 484452 + | hypothetical protein TERM 289 484688 - 484703 + G 86 -3.4 -5.86061 | TATATTATAGTATTT TTATTA TCTA TAATAA TTTTTTTTCCTAAAA TERM 290 485065 - 485050 - g 70 -6.2 -4.10164 | TCATGATTATAGAAA TGCTTT ATTT AAAGCA TTAGGGATTATTAGT TERM 291 485285 - 485272 - g 85 -2.5 -5.93252 | GCCAAAAATAAAAAA TTTTA TAAT TAAAA ATGAGCAGAATAATG RP397 484640 - 485305 + | thiol:disulfide interchange protein TLPA (tlpA) RP398 485286 - 486212 + | protease SohB dut 486214 - 486660 + | deoxyuridine 5'-triphosphate nucleotidohydrolase RP400 486815 - 488770 + | putative soluble lytic murein transglycosylase precursor (slt) RP401 488842 - 489585 + | hypothetical protein TERM 292 489726 - 489736 + G 72 -2.6 -5.42259 | AAAACTTATCTTTAC TAAT CAT ATTA TTTTTTTCAACATCA TERM 293 490199 - 490180 - g 78 -9.4 -3.25653 | opp_overlap 490180 AAAAGATCAAGGGAA TTTCACCA AGCT TGGTGAAA TATTAAAAGGTAAAG TERM 294 490180 - 490199 + G 75 -9.4 -3.03124 | opp_overlap 490180 AAAAGATCAAGGGAA TTTCACCA AGCT TGGTGAAA TATTAAAAGGTAAAG RP402 489701 - 490654 + | hypothetical protein TERM 295 490671 - 490657 - T 71 -5.8 -4.55491 | opp_overlap 490646 TATGGAATTATAAAA TTCATT GTA AATGAA AATAAAATACCAGTA TERM 296 490749 - 490721 - T 77 -7.7 -4.01737 | opp_overlap 490727 490730, overlap 490714 490748 ATTAACAATACTAAA TATTAATAATCTT TTG AAGATGATTAATA ACTCATGTAGTCACA RP403 493356 - 490744 - | hypothetical protein TERM 297 491854 - 491864 + g 70 -4 -4.91046 | ATATTTTTTAGCGTT TAGT ATA ACTA TTTGTTTATTTTGTA TERM 298 492142 - 492132 - G 86 -2.6 -6.07374 | opp_overlap 492132 ATAAAAAAGAAAAAA TTTT AGG AAAA TCTTTTTTATTCGTT RP404 494545 - 493700 - | hypothetical protein RP405 496496 - 494892 - | cytochrome c oxidase polypeptide I TERM 299 495179 - 495169 - G 78 -4 -5.40072 | TGTTGCGGAAAAAAA GTTA AAT TAAC ACCAATAAATGTAAT RP406 497516 - 496575 - | cytochrome C oxidase polypeptide II (coxB) TERM 300 498923 - 498909 - g 71 -7.2 -3.73402 | opp_overlap 498908 ATATGTTTCATTAAA TCTTTC AGG GAAAGA ATATAATATATATCG TERM 301 499449 - 499435 - g 70 -4.4 -4.98758 | AAAAATTTAGAAAAA TTTAAA CAA TTTAAA CAAGAAATAAAAACT RP407 498154 - 499530 + | hypothetical protein lspA 499679 - 500263 + | lipoprotein signal peptidase RP409 500285 - 500533 + | hypothetical protein TERM 302 500720 - 500701 - g 71 -2.2 -5.38951 | AATGCATATAAAAAA CAAAAAAT AGGT ATTTTTGG GCTTGGTAAAACAGG murD 500683 - 502020 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP411 502095 - 503228 + | cell division protein FTSW (ftsW) TERM 303 503386 - 503363 - g 91 -9.8 -4.33803 | opp_overlap 503363 AAATATATCAACAAA GATATGAAAA TAAT TTTTCATATC TTAAATTTGAAACGA TERM 304 503363 - 503386 + G 80 -9.8 -3.27525 | opp_overlap 503363 AAATATATCAACAAA GATATGAAAA TAAT TTTTCATATC TTAAATTTGAAACGA murG 503225 - 504382 + | N-acetylglucosaminyl transferase RP413 504614 - 505273 + | hypothetical protein TERM 305 506369 - 506389 + T 77 -7.7 -4.16305 | opp_overlap 506371 506373, overlap 506371 AAATATAAAATGAAT TATACCAAT AAT ATTGGTATG TTGTTATTTATGAAT TERM 306 506371 - 506387 + T 76 -8.1 -3.66744 | opp_overlap 506371 506373, overlap 506369 ATATAAAATGAATTA TACCAAT AAT ATTGGTA TGTTGTTATTTATGA TERM 307 506387 - 506371 - T 71 -8.1 -2.97123 | opp_overlap 506371 506369, overlap 506373 ATATAAAATGAATTA TACCAAT AAT ATTGGTA TGTTGTTATTTATGA RP414 509357 - 508341 - | CAPM protein (capM2) TERM 308 508453 - 508471 + g 90 -7.6 -5.31877 | opp_overlap 508453 GCTGCTTGTAAAGGA TTATCTAT TAA ATAGATAA TTTTTTCTGCTAAAT TERM 309 509533 - 509547 + H 73 -5.8 -4.80167 | TTTTTTATTCTTCTA TAACTA AAT TAGTTA TTTTAGTTTTTACTA TERM 310 510411 - 510399 - gH 76 -7.7 -3.91084 | TGAGTTTTAATGAAA CTTGG ATG CCAAG CCGTGATAAAATTTG dapF 510023 - 510835 + | diaminopimelate epimerase RP416 510810 - 512075 + | hypothetical protein pheS 512182 - 513234 + | phenylalanyl-tRNA synthetase subunit alpha pheT 513231 - 515678 + | phenylalanyl-tRNA synthetase subunit beta RP419 515683 - 516828 + | DNA polymerase III subunit beta TERM 311 516985 - 517011 + F 86 -9.6 -3.96327 | opp_overlap 516984 516983 516992 TTAATGAAAAAATTT TTTTAAATCAGG ACT CCAGATTTAAAA TTTATGCTAAGAAAT RP420 517194 - 517697 + | hypothetical protein TERM 312 519132 - 519108 - g 72 -7.9 -3.55487 | opp_overlap 519103 TGATAGTAACTATAA CCCACTTGAAC ATC ATTCAAGTTGG AAATATGTTAATTGT leuS 517762 - 520248 + | leucyl-tRNA synthetase TERM 313 520411 - 520391 - T 100 -11.3 -4.61868 | opp_overlap 520408 TATTCATATAGAAAA TACCTTCAT TTT ATGAAGGTA GATATGCCTTATAAT RP422 521439 - 520828 - | hypothetical protein RP423 521888 - 521565 - | hypothetical protein RP424 522571 - 521885 - | phosphatidate cytidylyltransferase (cdsA) RP425 523211 - 522531 - | hypothetical protein RP426 524675 - 523362 - | osmolarity sensor protein ENVZ (envZ) RP427 525327 - 524650 - | PETR protein (ompR) TERM 314 526064 - 526078 + G 70 -5 -4.59109 | AAAACATTATATACT CCTATT GCT GATAGG TTTTTAAACGGTATC RP428 525449 - 526321 + | branched-chain amino acid aminotransferase dapA 526544 - 527428 + | dihydrodipicolinate synthase smpB 527425 - 527883 + | SsrA-binding protein TERM 315 527956 - 527966 + F 70 -4 -5.10029 | TGATGTGTCACATCG CAAT TTT ATTG TTTTTTGAAATTGAT TERM 316 528132 - 528120 - g 72 -2.7 -5.4593 | TTAAAACAATAAAAA CTTAT TCT ACAAG TTCAATTTTCGTTGA RP431 528041 - 528841 + | hypothetical protein TERM 317 529008 - 528992 - T 82 -5.3 -5.5074 | opp_overlap 528992 GAATTTAATAAAAAA TATTTAA ATC TTAAATA TTATAAAAATTACCT RP432 530120 - 529242 - | succinyl-CoA synthetase subunit alpha TERM 318 529621 - 529640 + g 74 -8.6 -3.22091 | TGTCCAAGTCCTGCT GCAGTTGT CTGT GCAACTGC TTCATAAGTTAGAGT sucC 531443 - 530283 - | succinyl-CoA synthetase subunit beta RP434 532236 - 531598 - | hypothetical protein TERM 319 532335 - 532304 - R 82 -10.6 -2.9162 | opp_overlap 532304 532303, overlap 532309 TAATCTTTTAAAGTA TTTAATAAAAATAA GAAT TTATTTTTATTAAA GTTATATAAAATTAC TERM 320 532304 - 532335 + r 81 -10.6 -2.70994 | opp_overlap 532304 532309, overlap 532303 TAATCTTTTAAAGTA TTTAATAAAAATAA GAAT TTATTTTTATTAAA GTTATATAAAATTAC rbfA 532898 - 532512 - | ribosome-binding factor A RP436 533327 - 532902 - | hypothetical protein RP437 533497 - 534018 + | hypothetical protein recR 534089 - 534769 + | recombination protein RecR RP439 534841 - 536016 + | hypothetical protein ppnK 538110 - 537343 - | inorganic polyphosphate/ATP-NAD kinase TERM 321 538106 - 538118 + g 75 -4.9 -5.10526 | overlap 538104 GCTATTTTATTTATA TTCAT AAT ATGAA TTTCTTTTTTAATAT RP441 538197 - 539879 + | hypothetical protein gpsA 539937 - 540887 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 322 540920 - 540953 + F 70 -6.3 -4.29176 | opp_overlap 540925, overlap 540916 540925 CACGGTATTCGCTTA TAAAATAAGTTTTTA GAAA TAAAAGCTTATTTTC TTTTGGATTCACTCT TERM 323 540925 - 540948 + F 80 -6.2 -5.13343 | opp_overlap 540925, overlap 540916 540920 TATTCGCTTATAAAA TAAGTTTTTA GAAA TAAAAGCTTA TTTTCTTTTGGATTC TERM 324 541099 - 541111 + F 77 -4.9 -5.4492 | opp_overlap 541099 TAGTATCAGTAACAG TACAT CGA ATGTA TTTTTTATGTATCTG TERM 325 541754 - 541769 + G 83 -3.2 -5.70522 | GTCACATTTGTAATT GCAACA CTCT TGTCGC TTTTTTCTTATTATT RP443 541541 - 542470 + | hypothetical protein TERM 326 543004 - 542994 - g 72 -2.6 -5.44721 | ATCATGCTAAAAAAA TAAT ACT ATTA GATGATTTAGCTAGT RP444 542528 - 543409 + | hypothetical protein RP445 543530 - 544462 + | thioredoxin reductase (trxB1) RP446 545769 - 546611 + | glycosyl transferase (lgtD) RP447 546632 - 548608 + | DNA helicase II TERM 327 550304 - 550246 - g 100 -8.7 -5.69473 | gap 2, opp_overlap 550265, overlap 550250 550254 550257 550261 TAGATTAGAAAAAAA TAATT-C-AATTAGTAAGCAATTAGAACA AAT TGTTCTAATTGCTAACTCATCAGGAATTA AGAAGTCTAAAGTTA TERM 328 550298 - 550250 - g 79 -9.1 -3.51806 | opp_overlap 550265, overlap 550246 550254 550257 550261 TTAGAAAAAAATAAT TCAATTAGTAAGCAATTAGAACA AAT TGTTCTAATTGCTAACTCATCAG GAATTAAGAAGTCTA TERM 329 550294 - 550254 - g 100 -14.3 -3.44602 | opp_overlap 550265, overlap 550250 550246 550257 550261 AAAAAAATAATTCAA TTAGTAAGCAATTAGAACA AAT TGTTCTAATTGCTAACTCA TCAGGAATTAAGAAG TERM 330 550291 - 550257 - g 100 -16 -2.83642 | opp_overlap 550265, overlap 550254 550250 550246 550261 AAAATAATTCAATTA GTAAGCAATTAGAACA AAT TGTTCTAATTGCTAAC TCATCAGGAATTAAG TERM 331 550287 - 550261 - g 100 -15.4 -3.28984 | opp_overlap 550265, overlap 550257 550254 550250 550246 TAATTCAATTAGTAA GCAATTAGAACA AAT TGTTCTAATTGC TAACTCATCAGGAAT TERM 332 550265 - 550283 + G 73 -9 -3.19463 | opp_overlap 550261 550257 550254 550250 550246 TCAATTAGTAAGCAA TTAGAACA AAT TGTTCTAA TTGCTAACTCATCAG TERM 333 550358 - 550331 - g 89 -4.4 -5.88565 | gap 1 GTTATAATAAAAAAA TTAAATAAGTTAG ATT CTA-CTTATCTAA GTGAAAATAGTACTA RP448 549488 - 550852 + | hypothetical protein RP449 552025 - 551024 - | threonine dehydratase TERM 334 554307 - 554291 - g 73 -3.7 -5.27335 | overlap 554292 GGTCTTAAAGAAAAA TTACTTG CAG CAAGTAG AGGGGGGATTAAAAC TERM 335 554306 - 554292 - g 71 -7.2 -3.75678 | overlap 554291 GTCTTAAAGAAAAAT TACTTG CAG CAAGTA GAGGGGGGATTAAAA RP450 552125 - 554479 + | ATP-dependent protease LA (lon) TERM 336 554951 - 554973 + F 75 -3.6 -5.54192 | opp_overlap 554949 554957, overlap 554953 554968 CATTAACATTAACTT TATTAATATA AAA TATATTAAGA TTTTTTTAACTTAAT RP451 555011 - 562033 + | cell surface antigen (sca3) RP452 563653 - 562625 - | isopentenyl pyrophosphate isomerase TERM 337 564601 - 564625 + r 76 -4.5 -5.32944 | opp_overlap 564616, overlap 564603 ACGCTTCTATTATTC TTTTTATTTTA TAA TGAAATAAAGA TTTTTTACTTCTGAA RP454 566170 - 565421 - | UDP-N-acetylglucosamine pyrophosphorylase (glmU) RP455 566928 - 566170 - | hypothetical protein rpmJ 567072 - 566947 - | 50S ribosomal protein L36 RP457 567244 - 568116 + | hypothetical protein RP458 568122 - 568613 + | hypothetical protein TERM 338 570198 - 570168 - g 85 -11.4 -2.55216 | opp_overlap 570168, overlap 570167 570165 570191 TATGATTGATAAGAG TTCTGCAGATATTC TAG AAATATCTGCAAAA TGTGGTTATCTTACA RP459 570154 - 570834 + | hypothetical protein TERM 339 571604 - 571594 - g 70 -5.4 -4.55295 | opp_overlap 571594 TGCTTGATAAAGAAA TTGC TAA GCAA TTTATGACAATACAG RP460 570981 - 572342 + | dihydrolipoamide dehydrogenase RP461 572427 - 572945 + | hypothetical protein RP462 573911 - 573066 - | ribonuclease D (RND) RP463 574755 - 573925 - | hypothetical protein RP464 574833 - 575690 + | hypothetical protein RP465 576645 - 579410 + | alkaline phosphatase synthesis sensor protein PhoR TERM 340 580037 - 580027 - f 73 -5.4 -4.86822 | opp_overlap 580031, overlap 580031 AAGTATATAATAAAA CCAT GTC ATGG ATTGACTTTTTTATG TERM 341 580031 - 580043 + F 70 -3.4 -5.31275 | opp_overlap 580027 580031 ATATAATAAAACCAT GTCA TGGAT TGAC TTTTTTATGATCCGA hemC 580529 - 581428 + | porphobilinogen deaminase TERM 342 581739 - 581711 - T 70 -2.5 -5.5112 | TGGATTAATAAAAAA TATTCAGTGGTGT GTA AAACAACTAAATA AATGATTCCTTATCA RP468 582923 - 581931 - | tryptophanyl-tRNA synthetase TERM 343 582136 - 582148 + g 76 -3.5 -5.43487 | overlap 582132 AAACCTTGGTTTTGA TAATT ATC AATTA TTTTTTCTATACTTT TERM 344 583073 - 583090 + G 79 -7.1 -4.50976 | ATTTTTTTTCTTATA TGTTACA TACC TGTAACA TTTTGTAATGTCAAC RP469 582998 - 583729 + | 1-acyl-SN-glycerol-3-phosphate acyltransferase RP470 583784 - 584236 + | hypothetical protein TERM 345 585168 - 585179 + G 75 -4.4 -5.1925 | opp_overlap 585168 TTATAAAATTATCAA TGGT GCAG ACCA TTTTTTCCGTTATAA RP471 584599 - 585315 + | hypothetical protein RP472 586450 - 585446 - | hypothetical protein TERM 346 585530 - 585552 + g 71 -2 -5.47821 | overlap 585533 TAATTCTTCATAAAT TTGCTTATCT GAT AGAGAAGTGA TTTTTTTAAATAGCT RP473 587138 - 586443 - | hypothetical protein RP474 587934 - 587125 - | hypothetical protein RP475 589607 - 588249 - | muropeptide permease AmpG TERM 347 588343 - 588321 - G 71 -2.1 -5.34309 | opp_overlap 588325, overlap 588325 AGTAGTAAATAAAAA GAAATTTTG CCAAC CAAAATTTA CTACCATATAGCCTG TERM 348 590135 - 590125 - g 70 -4 -4.93318 | opp_overlap 590125 TAGAATGCATAAAAA TACA AAT TGTA TTATGGATATTGGCA RP476 590030 - 591583 + | lipopolysaccharide 1,2-glucosyltransferase (rfaJ) TERM 349 592347 - 592383 + G 71 -3.2 -5.28942 | CATGCTTCAGCCAAT CATATCAATTATTGTT ACTGC AGGAATAATTGCTATG TTTTTATTTAGAATA RP477 591652 - 593157 + | ADP,ATP carrier protein RP478 593261 - 594925 + | hypothetical protein TERM 350 595696 - 595686 - g 76 -5.4 -5.17353 | opp_overlap 595686 ACAGGTAGGAAAAAA CATC GGT GATG ATTTCTTAGAAGGAA RP479 595003 - 595986 + | octaprenyl-diphosphate synthase (ispB) RP482 598031 - 596256 - | hypothetical protein RP483 599403 - 598114 - | putrescine-ornithine antiporter (potE) TERM 351 599022 - 599040 + g 78 -10.4 -2.63596 | opp_overlap 599021 599013 599024 599029 599032, overlap 599024 TTAAAATTGCAATAG CAGCTAAT AAT ATTAGCTG TAATATCAAATCCAA TERM 352 599264 - 599247 - G 81 -8.5 -4.12416 | overlap 599244 AACAAGAAAATACAA GTGCTAT ACTC ATAGCAC CAAATAATGACAGAA RP484 599905 - 599573 - | HESB protein (hesB2) RP485 600304 - 599909 - | scaffold protein RP486 601602 - 600370 - | cysteine desulfurase TERM 353 600955 - 600983 + g 76 -9.7 -2.71731 | TAATGCCCCTATTCC TTTCGGGCCATAA ATT TTATGTCCTGAAA TACTTGCAAGATCAA RP487 602810 - 601680 - | NifS protein TERM 354 601729 - 601742 + g 70 -5.3 -4.58076 | opp_overlap 601729, overlap 601734 TATATCTCCTCAAAA GCTTT TATA AAAGC TTTTATATCACTTAT TERM 355 602119 - 602138 + g 85 -7.9 -4.7373 | ATTGCTAAAACATTT TCAGTGC CTGAGC GCACTGA TTTTTCCTGACCTCC RP488 603065 - 602871 - | hypothetical protein RP489 604083 - 603217 - | hypothetical protein TERM 356 604569 - 604559 - R 72 -4 -5.29782 | opp_overlap 604525 604565, overlap 604564 TACATTCATAAAAAA TCAA GCT TTGA GCATCAAATATTCAA RP490 605289 - 604621 - | hypothetical protein TERM 357 604862 - 604885 + g 70 -4 -5.00884 | opp_overlap 604864, overlap 604865 AGTAAAGAAGTTATA TATTCTAAAT GATA ATTTAGATTA TTTTTTGCGGCACGT TERM 358 604865 - 604882 + g 73 -5.7 -4.61482 | opp_overlap 604864, overlap 604862 AAAGAAGTTATATAT TCTAAAT GATA ATTTAGA TTATTTTTTGCGGCA TERM 359 605158 - 605172 + g 70 -5.8 -4.2528 | TGTTCCTGCAGGATT GATTTT TAA AAAATC TTTATTAAATTGCCA TERM 360 605677 - 605695 + H 73 -7.4 -4.14392 | TGTTGCCAACTTACC GGTGTGCT CTT ACCACACC TTTTCACCCTTACCG TERM 361 608454 - 608484 + G 80 -7 -4.7173 | opp_overlap 608483, overlap 608442 AGAGATGACATTGCA TCTTTTCTTCCATA TTA TTTAGAAGAAAAGA TTTTTGAATCTGATC RP492 606090 - 608732 + | pyruvate phosphate dikinase TERM 362 609301 - 609326 + F 70 -7.1 -3.70741 | overlap 609299 TATTATTGCTTATTT TTTCTATTTTT TTAA AAAAATGGAAA TATTTCTTGCACTTT RP493 609590 - 610285 + | hypothetical protein RP494 611929 - 611207 - | hypothetical protein RP495 611928 - 612758 + | hypothetical protein RP496 613753 - 612896 - | hypothetical protein RP497 614272 - 614664 + | hypothetical protein RP498 617118 - 614761 - | cell surface antigen (sca4) RP499 617830 - 617087 - | hypothetical protein RP500 619609 - 618071 - | ADP,ATP carrier protein truB 619825 - 620343 + | tRNA pseudouridine synthase B RP502 620322 - 620702 + | hypothetical protein rpsO 620724 - 620999 + | 30S ribosomal protein S15 TERM 363 621019 - 620999 - f 80 -9.9 -2.88491 | opp_overlap 620999, overlap 620996 CAGAAAGATTAAGTA GTATAAGTA TTA TACTTATAC CGCAACTTAAATTAG RP504 621154 - 623391 + | polynucleotide phosphorylase/polyadenylase TERM 364 624014 - 624002 - g 76 -7.7 -3.98256 | opp_overlap 624008, overlap 624000 TTTTTATTAAAAATA CCTGA ATG TCAGG AGGCATCGTTAATTG RP505 623576 - 624535 + | arabinose-5-phosphate isomerase RP506 624541 - 625146 + | hypothetical protein RP507 625112 - 625549 + | hypothetical protein TERM 365 625729 - 625706 - g 78 -3.3 -5.63504 | opp_overlap 625724 625726, overlap 625726 AATCCTATAAAAAAA GAAATATAT TAACTG ATATATCTC TTCATATAAAACAAG RP508 625618 - 626382 + | ABC transporter ATP-binding protein RP509 626475 - 628001 + | phosphomannomutase (exoC) TERM 366 629020 - 629033 + G 72 -2.5 -5.41143 | AATCTTATCTGATTT TAATT TCAA AATTA TTTTTTTAAACCCTG TERM 367 629128 - 629104 - g 76 -8.8 -3.46302 | opp_overlap 629108 629121, overlap 629102 629108 629121 TAAGATATTTAAAGA TAAAGCAATT GATGA AATTGCTTTA TTAAAAAAGCAATTT miaA 628448 - 629383 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 368 629949 - 629959 + T 70 -4 -5.18355 | opp_overlap 629944 629949, overlap 629944 TTGCAATATATTAAA GTTT TTT AAAC TTTTTCATTTTTAAA TERM 369 630205 - 630189 - T 70 -3.8 -5.13741 | overlap 630202 TTAATTTAATAAAAA TTGATT CTAAT AATCAA ATCAATTTGATTGCA RP511 633083 - 630231 - | hypothetical protein TERM 370 630623 - 630643 + g 85 -8.5 -4.4715 | CTCTATTATCCCCTT TATCAAAAA GTT TTTTTGATA TTTTCTCGCTTAAAA TERM 371 631206 - 631216 + g 70 -5.4 -4.56961 | overlap 631211 TTCTAAGTTAAATTT TCCA TTT TGGA TTTTATCTAAATGTT TERM 372 632998 - 633011 + g 74 -6.7 -4.29326 | GATAAATCCTTAATT GCACT CTTG AGTGC TTTATTAGCTTTAGA nrdF 634123 - 633149 - | ribonucleotide-diphosphate reductase subunit beta TERM 373 633434 - 633420 - G 70 -5 -4.68103 | opp_overlap 633432, overlap 633432 GCAAGTTCAATAAAA GCATCT TCA AAATGC ACAATAGTTGTACAT RP513 636111 - 634288 - | ribonucleotide-diphosphate reductase subunit alpha TERM 374 634589 - 634606 + g 70 -4.1 -4.90079 | opp_overlap 634589, overlap 634597 TGATCAATCTCATAA GCAGTTT TGAA AATCTGC TTTTCTTCTTCAGAT TERM 375 635692 - 635680 - G 70 -6.3 -4.18934 | CATTACTTTAATAAA TGGTA TAA TACCA GATGAATGACCTTTA TERM 376 636225 - 636235 + H 82 -2.6 -6.17292 | opp_overlap 636225 ATAATTTATTCAATA TAAA TAT TTTA TTTTTTTTTAGATTT TERM 377 637935 - 637919 - g 75 -4.5 -5.16472 | AAAAACTTCAAAAAA TACTCTT ATT AAAAGTA AAGTTATTATTATTG RP514 637611 - 638615 + | thioredoxin reductase (trxB2) RP515 638717 - 639649 + | methylenetetrahydrofolate dehydrogenase (folD) RP516 640285 - 639728 - | hypothetical protein RP517 640852 - 640421 - | sigma(54) modulation protein TERM 378 640873 - 640914 + r 100 -22.1 -4.19624 | opp_overlap 640873 640877, overlap 640865 ACCTTTATAATCTAA TTAATTGTATAGGTGTTAC TAAA GTAACACCTATACAATTAA TTTATATTGAGAATA TERM 379 640914 - 640873 - R 100 -22.1 -3.23452 | opp_overlap 640865 640873, overlap 640877 ACCTTTATAATCTAA TTAATTGTATAGGTGTTAC TAAA GTAACACCTATACAATTAA TTTATATTGAGAATA TERM 380 640910 - 640877 - R 100 -18.5 -3.41978 | opp_overlap 640873, overlap 640873 TTATAATCTAATTAA TTGTATAGGTGTTAC TAAA GTAACACCTATACAA TTAATTTATATTGAG TERM 381 641795 - 641775 - R 78 -5.5 -5.15167 | opp_overlap 641774 641775 CACTACTAATAAAAA CTTATTCTT GAG AAGAAAAAG GTATTTATCAAATAA clpP 643042 - 642437 - | ATP-dependent Clp protease proteolytic subunit TERM 382 642915 - 642899 - G 72 -6.7 -4.06419 | opp_overlap 642902, overlap 642902 TGCTTCGAGAAACAA TAATTGT GCA ACAATTA AGTTTGCCATATGAT rpsA 644901 - 643195 - | 30S ribosomal protein S1 TERM 383 643264 - 643274 + g 76 -5.4 -5.11033 | ATCGCTAGAGCCATA CTCT TTC AGAG TTTTTTGACGTTCTG TERM 384 644090 - 644108 + g 70 -3.8 -5.14965 | TCAAGTTGTTTTATA CCAAGCGA TAT TCTTTTGG TTTTTTCATCAAACT TERM 385 645130 - 645110 - R 84 -9.1 -4.25389 | ATCACAACAGAGAAA TTGCGTCAT GCA ATAACGCAA TAAAATAACAGAGCA cmk 645810 - 645151 - | cytidylate kinase TERM 386 646106 - 646122 + r 79 -3.8 -5.64421 | GTTTGATAATAACTT TTTTGA ATCCA TCAAAA TTTTTTATTTAAGAT RP524 647562 - 647320 - | hypothetical protein RP525 648479 - 647562 - | protease IV (sppA) rho 649991 - 648618 - | transcription termination factor Rho RP527 651638 - 650319 - | hypothetical protein TERM 387 650808 - 650818 + g 75 -4 -5.24531 | TATATAATTTTCTGT TCTT AAT AAGA TTTTTTCTAAAGGAT RP528 653418 - 651658 - | single-stranded-DNA-specific exonuclease RECJ (recJ) prfA 654591 - 653524 - | peptide chain release factor 1 TERM 388 653996 - 653982 - G 71 -8.6 -2.78216 | overlap 653984 CAGCCTCAGGAAGTA CAGCAA CCG TTGCTG CTGAAGTATGAATAC RP530 655997 - 654771 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 389 655698 - 655716 + g 76 -6.8 -4.4009 | AGCATCTGTTTTTAG TGATAGTG ATA CACTATTA TTTTGTGCAATAAAC infC 656680 - 656123 - | translation initiation factor IF-3 RP532 657062 - 656730 - | hypothetical protein RP533 658490 - 657684 - | biotin--protein ligase RP534 660458 - 658662 - | hypothetical protein TERM 390 660152 - 660130 - G 100 -12.8 -3.01712 | GGCGGTGTCCCAAGA GCTACCACTG CAG CAGTGATAGC ACCAACAGAAGAACC RP535 661109 - 660480 - | superoxide dismutase (sodB) RP536 662505 - 661204 - | folylpolyglutamate synthase (folC) RP537 664461 - 665837 + | NADH dehydrogenase subunit N RP538 667365 - 665824 - | hypothetical protein TERM 391 666083 - 666096 + g 72 -5.3 -4.72729 | CTTGTCCCATATCTA TCAGT CTTT ACTGA TTTTGGTTTTGATTC TERM 392 666995 - 667016 + g 95 -10.3 -4.08394 | opp_overlap 667000, overlap 667000 CTTCCCCCGTCCTTT CTAAACCAA GAAC TTGGTTTAG TTTTAGCAGACATAT TERM 393 667217 - 667230 + g 80 -2.4 -5.71983 | TCAGCTATATTTTTC GAAC TTGACC GTTC TTTTTTTATCATTGC TERM 394 667306 - 667318 + g 72 -7.7 -3.57561 | TGCTTCATTAACTCC GCCTA ATT TAGGC TTTAAAAAATTCCAA RP539 668436 - 667444 - | delta-aminolevulinic acid dehydratase RP540 671075 - 669129 - | primosome assembly protein PriA RP541 671138 - 671707 + | aromatic acid decarboxylase TERM 395 672168 - 672188 + F 79 -4.1 -5.77988 | overlap 672170 AAGATACTTTTTAAG TGCTAAATT ATT AATTTAGTG TTTTTTTATATCTCT TERM 396 672170 - 672186 + F 75 -6.7 -4.51477 | overlap 672168 GATACTTTTTAAGTG CTAAATT ATT AATTTAG TGTTTTTTTATATCT RP542 672867 - 674327 + | replicative DNA helicase RP543 674912 - 675124 + | hypothetical protein TERM 397 675308 - 675297 - g 72 -4.4 -5.1383 | opp_overlap 675297 AATAATACACAAAAA CCAA GGCT TTGG ATTTATTACAAGCCC RP544 675117 - 675824 + | hypothetical protein TERM 398 675876 - 675862 - f 73 -5.8 -4.79451 | opp_overlap 675862 675860 ATCGGAAACATAAAA TCTTAT ATA ATAAGA TGTACTTCTTTTGAA TERM 399 676278 - 676250 - f 70 -7.5 -3.31415 | TAGTAGCAAATTTAA GACAAGTACTTAA AGA CCAAGGACTTGTC AGAACAATACACAAA RP545 676331 - 677041 + | hypothetical protein TERM 400 677575 - 677561 - g 74 -8.6 -3.35476 | opp_overlap 677556, overlap 677553 677559 TAACTAACTATAATA CTGCTA TTT TAGCAG CTACTAATTTAGAAG TERM 401 678352 - 678341 - g 76 -3.6 -5.42164 | GAGAAATAAGAAAAA CCGC GAAA GCAG AAACAAGAATAAAAG RP546 677134 - 678480 + | DNA repair protein RadA RP547 678477 - 678797 + | hypothetical protein recO 678854 - 679565 + | DNA repair protein RecO RP550 679960 - 679688 - | hypothetical protein RP551 679938 - 680498 + | hypothetical protein infB 684432 - 681937 - | translation initiation factor IF-2 TERM 402 682059 - 682076 + g 79 -5.7 -5.1166 | overlap 682072 CTTCTTTAACTTCAT CTTTAAA ACGT TTTAAAG TTTTTAGTTTTCCTG nusA 686157 - 684646 - | transcription elongation factor NusA RP554 686815 - 686462 - | hypothetical protein TERM 403 686854 - 686840 - R 100 -7.8 -5.60689 | opp_overlap 686839 TTATATAATAAAAAA GGTGGA AAA CCCACC CTGCTGTTTATAATT TERM 404 687146 - 687129 - R 84 -4.9 -5.75342 | CCTTTTGAAAAAAAA GCCTAAT AAAA ATTAGAC AGTGATTATACAAGT TERM 405 687600 - 687576 - R 75 -6.5 -4.4017 | opp_overlap 687576 687579 687580 TCAAGGCTTATAAAA TACTTCCTACT ACT AGTAGGATATA TTTCTTCTTACACAA TERM 406 687580 - 687596 + r 83 -9.5 -3.49065 | opp_overlap 687576, overlap 687579 687576 GGCTTATAAAATACT TCCTACT ACT AGTAGGA TATATTTCTTCTTAC TERM 407 688140 - 688116 - R 73 -6.5 -4.33182 | opp_overlap 688136, overlap 688117 TGATTGATAAAATAA TTCTCCCTATA AAT TATAGGGAAAT AGGCATATTTCTTTT TERM 408 688139 - 688117 - R 85 -10 -3.19186 | opp_overlap 688136, overlap 688116 GATTGATAAAATAAT TCTCCCTATA AAT TATAGGGAAA TAGGCATATTTCTTT RP555 688884 - 688129 - | hemolysin (tlyA) RP556 690263 - 689028 - | tyrosyl-tRNA synthetase TERM 409 690713 - 690735 + H 79 -10 -2.66634 | overlap 690709 ATATCATTACTGTAA GGTTTTATTG CAT CAGTAAAACC TGCTGTGGTCACCTA TERM 410 693108 - 693098 - g 78 -4 -5.4251 | opp_overlap 693098, overlap 693107 CTTACAGATAAAAAA GATA TAG TATC TATTATTATAAAAGA TERM 411 693218 - 693202 - g 74 -6.7 -4.25606 | overlap 693209 693211 TAAGATGCAAAATAA TATAAGA TAT TCTTATA AAGAAAAAGTATTAA TERM 412 694617 - 694633 + G 77 -8.1 -3.84587 | opp_overlap 694616 ATGATTCTTTAACAG GCTTATA TAA TATAAGC TTATATTTAGGTGAT RP558 692453 - 695686 + | hypothetical protein TERM 413 696560 - 696544 - g 70 -5.1 -4.53705 | AAGCCTGATATAAAA TCTGTGC ATA GAACAGA ATTAACTAGCACTAC RP559 695689 - 698118 + | hypothetical protein RP560 700887 - 698725 - | 3-hydroxyacyl-CoA dehydrogenase TERM 414 700727 - 700738 + g 74 -3 -5.36314 | opp_overlap 700727 TTTTGTTTATGCAAA TTCT TTAC AGAA TTTTTTACTATTTTA TERM 415 702230 - 702199 - R 100 -14.8 -3.97388 | opp_overlap 702192 702202 702206 702225 ATATTTGAGTAGAAA CTACTAACTATAAT GACA ATTATAGTTAGTAG TGTAACAACTATTAT TERM 416 702202 - 702227 + r 81 -10.7 -2.62735 | opp_overlap 702199, overlap 702192 702206 702225 TTTGAGTAGAAACTA CTAACTATAAT GACA ATTATAGTTAG TAGTGTAACAACTAT RP561 703394 - 702486 - | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 417 702840 - 702856 + g 71 -6.7 -3.95852 | AAAAGTTAGAGCAGT TTGATAA GGT TTATCAA TTTCATTAGTGAAAT MnhF 703632 - 703372 - | putative monovalent cation/H+ antiporter subunit F RP562 704020 - 705447 + | nitrogen assimilation regulatory protein NTRX (ntrX) TERM 418 706400 - 706390 - gT 82 -4 -5.5112 | opp_overlap 706390 TTTATCAATAAAAAA TAGT AAT ACTA ATTTTGTAAGGATTA RP563 705416 - 707182 + | hypothetical protein RP564 708322 - 707339 - | hypothetical protein TERM 419 707970 - 707947 - G 81 -10.4 -3.20858 | opp_overlap 707952 707962 TAGCATATGCACTAA CTACATCTGC TTGA GCAGATATAG TATCAGTAATTATTG RP565 710333 - 708549 - | penicillin-binding protein (pbpA1) RP566 710844 - 710323 - | hypothetical protein TERM 420 710712 - 710697 - G 70 -6.2 -4.06677 | opp_overlap 710696 710707 AATAAATAAATATAA TTTCCA TTGC TGGAAA AATTCTACTTTGGAT RP567 712966 - 711281 - | penicillin binding protein (pbpA2) TERM 421 712353 - 712367 + g 82 -8.6 -3.97042 | TGAAGTGGTGCTTTC TGATCC TTT GGATCA TTTAATTCATAATCA RP568 713482 - 713093 - | hypothetical protein mraW 714627 - 713707 - | S-adenosyl-methyltransferase MraW RP570 715076 - 714627 - | cell division protein MraZ TERM 422 716170 - 716195 + G 72 -8.3 -3.29263 | gap 1 TATATTTACAAGTTC TGTCGGAGG-GG CTA CCACCTTCGGCA TTATGGAAAAAGTAT TERM 423 716788 - 716755 - g 71 -3.3 -5.1963 | overlap 716757 GTTAATTAATAAAAA TCCTACACATACTAC TAAA GCAATATATGTAAAA TCTGCTATATATTTT RP571 716000 - 717385 + | sodium/pantothenate symporter (panF) uvrC 719510 - 717630 - | excinuclease ABC subunit C TERM 424 718381 - 718393 + g 72 -4.9 -4.9138 | GCAAACATAATATCT GTATT CTT AATAC TTTTCTTTAAATACT TERM 425 719458 - 719441 - G 90 -9.9 -3.90318 | opp_overlap 719439 CTAGCATTTTATAAA CTCCTGA ACAT TCAGGAG CATCTATAATTTGCG RP573 720164 - 719619 - | hypothetical protein TERM 426 721620 - 721581 - R 72 -6.2 -4.42619 | gap 1, opp_overlap 721589, overlap 721589 TAATACCCTATAAAA TTATATAATATAGAATTAT GCA ATAATTCTATATT-TATTA AGTACAATCACTGAT TERM 427 721589 - 721613 + r 95 -10.3 -4.20783 | opp_overlap 721581 721589 TATAAAATTATATAA TATAGAATTAT GCA ATAATTCTATA TTTATTAAGTACAAT TERM 428 721613 - 721589 - R 91 -10.3 -3.70364 | opp_overlap 721589, overlap 721581 TATAAAATTATATAA TATAGAATTAT GCA ATAATTCTATA TTTATTAAGTACAAT secA 726060 - 723340 - | preprotein translocase subunit SecA TERM 429 724233 - 724254 + g 75 -7.3 -4.08394 | AGCGACTAATCATTG GATGGTGAA TAGC TTCTCCATC TTTTAAGCCAAGTGT RP576 726285 - 727133 + | protein export protein PRSA precursor (prsA) acpS 727695 - 727315 - | 4'-phosphopantetheinyl transferase rpoZ 728079 - 727696 - | DNA-directed RNA polymerase subunit omega RP579 729493 - 728234 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 430 728916 - 728898 - G 74 -7.5 -4.00486 | opp_overlap 728900 TTTATAAGACAATAA CAGAGAT CTACT ATCTCTG GTTCACGGCCACAAT gyrB 732018 - 729595 - | DNA gyrase subunit B TERM 431 732961 - 732925 - g 71 -4.7 -4.76644 | gap 1, opp_overlap 732926, overlap 732926 732928 AACATTCATGAAAAA TTAGATAGTTTAATGG AAGCTG CCATTAAACAATC-AA TTATACCTAATTTTG TERM 432 732959 - 732928 - g 74 -8.9 -3.28873 | opp_overlap 732926, overlap 732925 732926 ATTCATGAAAAATTA GATAGTTTAATGG AAGCTG CCATTAAACAATC AATTATACCTAATTT RP581 732133 - 732993 + | hypothetical protein TERM 433 733647 - 733678 + G 70 -3.8 -5.11613 | gap 1, opp_overlap 733628, overlap 733631 733648 733649 GCAGCTGCAAGTAGG CTTGCTAAG-CTGCA TTA TGCAGATTTAGCAGA TTTTTTAGATAATCT TERM 434 733649 - 733676 + G 71 -8.6 -2.78807 | gap 1, opp_overlap 733628, overlap 733631 733648 733647 AGCTGCAAGTAGGCT TGCTAAG-CTGCA TTA TGCAGATTTAGCA GATTTTTTAGATAAT TERM 435 734314 - 734290 - g 76 -9.5 -3.16881 | TAGGTAGTGTATCAA TCGATAATATA ATT TACATTATCGA AGAACAAGCAGGGAA TERM 436 734849 - 734863 + G 84 -8.6 -4.254 | AACTATAACAGATGC GTTAGG GTT CCTAAC TTTCTTAAGTCTTGC RP583 733527 - 734897 + | magnesium transporter (mgtE) TERM 437 735884 - 735901 + F 73 -5.7 -4.8622 | opp_overlap 735874 735884 CATACCTATTTATAA TAGTAAA ACTA TTTACTA TTTTTGATTACAGAC yajC 737385 - 737813 + | preprotein translocase subunit YajC secD 737797 - 739353 + | preprotein translocase subunit SecD RP587 739501 - 740118 + | SCO2 protein precursor (sco2) RP588 740220 - 740606 + | cytochrome c-type biogenesis protein CcmE RP589 740735 - 741253 + | inorganic pyrophosphatase TERM 438 742505 - 742525 + G 72 -7.7 -3.56643 | opp_overlap 742505 742504, overlap 742508 AATTAATACTAATAT GAATCTATT ATT AATGGATTC TTTAAAACATATAGG RP590 741324 - 742847 + | virulence factor MVIN (mviN) TERM 439 743295 - 743311 + G 77 -5.9 -4.96646 | opp_overlap 743295 GACTAATCTAAAACT TTGCTGT TTT ATAGCAA TTTTTACTTCTATAG RP591 742828 - 743574 + | hypothetical protein RP592 743650 - 744264 + | hypothetical protein RP593 746628 - 744454 - | ATP-dependent DNA helicase RECG (recG) TERM 440 745844 - 745875 + g 83 -6.8 -5.02074 | overlap 745847 TTTAAAAGAGATATT TGATTAGCGATTAA TTCT TTAATTGCTAATTG TTTTTTGGCAGCTAC TERM 441 745847 - 745872 + g 85 -8.5 -4.61482 | overlap 745844 AAAAGAGATATTTGA TTAGCGATTAA TTCT TTAATTGCTAA TTGTTTTTTGGCAGC TERM 442 746640 - 746690 + r 75 -9.4 -2.57931 | opp_overlap 746655, overlap 746639 746655 746659 TCATTGATATAATTG TACTTGTTTAGTATATTAATCTTT AAA AAAGGTTAATATACTAATAAAGAA ATTATCAAAAATAAC mraY 749475 - 748390 - | phospho-N-acetylmuramoyl-pentapeptide-transferase RP596 750991 - 749642 - | UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF) murE 752540 - 751098 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase RP598 756023 - 752661 - | transcription-repair coupling factor TERM 443 754123 - 754106 - G 81 -7.1 -4.57353 | GTTGACTACATAAAA TAGTTGT CGGA ACAACTA CAGCTACTTGTGGTA RP599 756298 - 756035 - | hypothetical protein RP600 756494 - 756865 + | hypothetical protein TERM 444 757209 - 757188 - g 73 -8.7 -3.16264 | overlap 757186 AATCACCTACTAAGA CTTTTGCCG ATAT CGGCAACAG TGCACTAAATTCAGA dnaA 756866 - 758257 + | chromosomal replication initiation protein TERM 445 758928 - 758960 + F 76 -9.5 -2.87344 | opp_overlap 758925 758928 758945, overlap 758930 ATATATGAGCAACAT CTTATTTGTAAAATA TAC TATTTTAAAAATAAG TGTATGAAAAACATC TERM 446 758960 - 758928 - f 75 -9.5 -2.51256 | opp_overlap 758928 758930, overlap 758925 758945 ATATATGAGCAACAT CTTATTTGTAAAATA TAC TATTTTAAAAATAAG TGTATGAAAAACATC RP602 759895 - 761379 + | patatin B1 precursor (pat1) TERM 447 761544 - 761522 - T 91 -12.8 -2.87211 | AGTTGTTTCTAGATA CTGTGGCCTA AGC TAAGCCACAG TACAAACAATATTGA RP603 762813 - 761590 - | bicyclomycin resistance protein (bcr1) TERM 448 762789 - 762772 - G 74 -6.3 -4.48317 | overlap 762783 TGATAAAATAAATAA GCATAGA AGCA TCCATGC CGGAATCTTTGCAAT RP604 764877 - 763780 - | translation-associated GTPase TERM 449 764047 - 764029 - G 71 -3.2 -5.22312 | opp_overlap 764029 764030, overlap 764030 ACCTATAGTAAAAAA GCTTTTAA GAT TTAAAAGA TTATAACCTTCTTTA RP605 765806 - 765249 - | peptidyl-tRNA hydrolase TERM 450 765308 - 765337 + g 88 -8.7 -4.47328 | opp_overlap 765308 765307 TTAAACCAAAATTAT TAGCAATGTTATC TATA GATTGCATTGCTA TTTTATACTCAGATT TERM 451 765669 - 765680 + g 83 -3 -5.73978 | overlap 765665 AACAGCTTCCGCAAT TTCA CAAT TGAA TTTTTTCTTTATACT TERM 452 765960 - 765973 + r 75 -6.7 -4.52142 | AAATCCAATCAGAGT GCGAT TAAC ATCGC TTTGTCTTTTGTAAT RP606 766647 - 766036 - | 50S ribosomal protein L25/general stress protein Ctc RP607 767576 - 766872 - | hypothetical protein rpmI 767726 - 767929 + | 50S ribosomal protein L35 rplT 767950 - 768303 + | 50S ribosomal protein L20 rpmH 768433 - 768567 + | 50S ribosomal protein L34 rnpA 768581 - 768946 + | ribonuclease P RP612 770799 - 769093 - | hypothetical protein TERM 453 770848 - 770824 - R 90 -11.7 -2.98387 | opp_overlap 770824 770827, overlap 770821 770819 770827 CCTTATAAAATATTA TAATTACCATA TAA TATGGTAATTA TTTAAAATGTCAAGA TERM 454 770824 - 770848 + r 95 -11.7 -3.63627 | opp_overlap 770824 770821 770819 770827, overlap 770827 CCTTATAAAATATTA TAATTACCATA TAA TATGGTAATTA TTTAAAATGTCAAGA TERM 455 770827 - 770845 + r 81 -9 -3.95378 | opp_overlap 770824 770821 770819 770827, overlap 770824 TATAAAATATTATAA TTACCATA TAA TATGGTAA TTATTTAAAATGTCA TERM 456 770845 - 770827 - R 79 -9 -3.6249 | opp_overlap 770827 770824, overlap 770824 770821 770819 TATAAAATATTATAA TTACCATA TAA TATGGTAA TTATTTAAAATGTCA TERM 457 771221 - 771199 - R 72 -3.6 -5.30339 | opp_overlap 771199, overlap 771220 AGGAAAACACAAAAA TACTTACATA GTA TATATAAATA CATGAGACAAGTACA TERM 458 773734 - 773771 + r 80 -6.6 -5.08255 | gap 2, overlap 773737 773740 773764 CCGATAGCGTTCGTT CTGAGCCAGGATCAAACT CTCA AGTTTGATTCTG--TCAG TTTTATTTTCAAAAT TERM 459 773737 - 773770 + r 72 -7.5 -3.63868 | overlap 773734 773740 773764 ATAGCGTTCGTTCTG AGCCAGGATCAAACT CTCA AGTTTGATTCTGTCA GTTTTATTTTCAAAA TERM 460 773740 - 773767 + r 89 -12.2 -2.92168 | overlap 773737 773734 773764 GCGTTCGTTCTGAGC CAGGATCAAACT CTCA AGTTTGATTCTG TCAGTTTTATTTTCA TERM 461 773869 - 773879 + r 71 -6.8 -4.1347 | CTTTTAAAAACAGCT GCGA CTT TCGC TTTGTATAGTTGCAG TERM 462 774160 - 774142 - R 90 -10.4 -3.41125 | CTTATATAGTTATAA TACTACTC AAT GAGTAGTA CTAGGATCATCAAAT RP614 777024 - 775219 - | nitrogen regulation protein NTRY (ntrY) TERM 463 777227 - 777200 - R 90 -10.8 -3.35384 | opp_overlap 777200 777201 777205 777223, overlap 777201 777205 ATAATCTATATAACA CTAAAGCTAGAA ATAT TTCTAGCTTTAA TTTAGTATTAAAATC TERM 464 777200 - 777227 + r 78 -8.6 -3.93038 | opp_overlap 777200 777201 777205, overlap 777201 777205 777223 ATAATCTATATAACA CTAAAGCTAGAA ATAT TTCTAGCTTTAA TTTAGTATTAAAATC TERM 465 777226 - 777201 - R 88 -12.1 -2.60508 | opp_overlap 777200 777201 777205 777223, overlap 777200 777205 TAATCTATATAACAC TAAAGCTAGAA ATAT TTCTAGCTTTA ATTTAGTATTAAAAT TERM 466 777201 - 777226 + r 90 -12.1 -2.95341 | opp_overlap 777201 777200 777205, overlap 777200 777205 777223 TAATCTATATAACAC TAAAGCTAGAA ATAT TTCTAGCTTTA ATTTAGTATTAAAAT TERM 467 777222 - 777205 - R 78 -8.5 -3.99275 | opp_overlap 777205 777201 777200, overlap 777201 777200 CTATATAACACTAAA GCTAGAA ATAT TTCTAGC TTTAATTTAGTATTA TERM 468 777205 - 777222 + r 79 -8.5 -4.14345 | opp_overlap 777201 777200 777205, overlap 777201 777200 CTATATAACACTAAA GCTAGAA ATAT TTCTAGC TTTAATTTAGTATTA rpsU 777452 - 777252 - | 30S ribosomal protein S21 TERM 469 777851 - 777865 + G 70 -5.8 -4.27316 | TCCTATTATTCATAG TAAGAA TGC TTCTTA TTTTGCATTAAACCC TERM 470 778128 - 778111 - g 90 -3.5 -6.23545 | TCCAAATAAAAAAAA TACTTGA CACT TCAAATA TCCCAATAATTAGAA RP616 777543 - 778154 + | hypothetical protein TERM 471 781492 - 781480 - g 79 -7.7 -4.2237 | AAATCAATGTTAAAA CGGTA ATA TACCG TGATGATCTAGAGAA ileS 778755 - 782015 + | isoleucyl-tRNA synthetase TERM 472 782197 - 782181 - T 73 -5.3 -4.82667 | opp_overlap 782183, overlap 782190 TCAGTAGATCAAAAA TATAAAA AAT TTTTATA AATTTAATAAAAAAG TERM 473 782210 - 782190 - T 73 -2.7 -5.69068 | opp_overlap 782183, overlap 782181 CAAAAATATAAAAAA TTTTTATAA ATT TAATAAAAA AGTATAGTTAATCTA RP618 784687 - 782690 - | propionyl-COA carboxylase alpha chain precursor (pccA) TERM 474 783285 - 783274 - G 78 -4.4 -5.4433 | ATATATAAATAAAAA TAGC AGTT GCTA GAAATACGGTAGTTA TERM 475 783811 - 783827 + g 70 -3.8 -5.16841 | GCAATCTAGTATTCA TTTCTA AAAAA TAGAAA TTTTTATTGCTGTCA RP619 786324 - 784780 - | propionyl-COA carboxylase BETA chain precursor (pccB) TERM 476 786149 - 786132 - G 70 -8.5 -3.08046 | overlap 786131 786134 TCTGCATCCCAAAAT TATCGCA TCTA TGCGATA CAAACATTCCTGTTT TERM 477 787567 - 787582 + G 71 -4.7 -4.7254 | ATTATTGCTTTTCTT GGCTT TATTAC AAGCC TTTTTGCTCCAAAAT TERM 478 788782 - 788772 - g 75 -4 -5.28755 | AAATATATTAAAAAA GAAA ATA TTTC CTAAAATTACTATAA RP620 787012 - 790470 + | acylglycerophosphoethanolamine acyltransferase RP621 791580 - 790819 - | hypothetical protein TERM 479 791706 - 791688 - g 75 -4.6 -5.05301 | opp_overlap 791688 791690, overlap 791682 791690 AAAGAATTAGAAAAA TTTGAGAA AAT TTCTCATA ATTGGTGGAATAAGA TERM 480 792091 - 792068 - g 74 -7.6 -3.86283 | opp_overlap 792068 GCAATTTATACTAAA TTTGGTTCAA CATA TTAAACCAAA TGGTATAGCAATAAT RP622 791655 - 792413 + | 3-demethylubiquinone-9 3-methyltransferase TERM 481 793924 - 793912 - g 70 -3.5 -5.02231 | opp_overlap 793912 TAAAAAGATTAAAAA TTATA TAT TATAA TAATCTGAATTTTTG gltX 792528 - 793940 + | glutamyl-tRNA synthetase TERM 482 797340 - 797330 - T 70 -4 -5.19251 | opp_overlap 797330, overlap 797318 TAATATTAATAAAAA CTAA GCT TTAG TTGATATTAATAAGG groEL 799735 - 798083 - | chaperonin GroEL TERM 483 799240 - 799251 + g 72 -4.4 -5.03747 | TGCCGACTTCCTCCA TTGC CTTA GCAA TTTTTTCGCCGATTT groES 800043 - 799756 - | co-chaperonin GroES rph 802552 - 801830 - | ribonuclease PH RP629 802764 - 803300 + | heat shock protein GrpE TERM 484 803308 - 803295 - f 78 -5.3 -5.12617 | CAAGTAGTTAAAAAA CCTTA ATGC TAAGG TAGAGCTGAAAGAAT TERM 485 803589 - 803626 + G 72 -5.2 -4.75356 | gap 1, opp_overlap 803583 803589 AATCAAAACTTGAAA TATCAAATAAATTA-GC ATCAA GCATAATTTATCTGATA TTTTTGAGTATATTT TERM 486 803626 - 803589 - g 71 -7.4 -3.78087 | gap 1, opp_overlap 803589, overlap 803583 AATCAAAACTTGAAA TATCAAATAAATTA-GC ATCAA GCATAATTTATCTGATA TTTTTGAGTATATTT RP630 803435 - 804490 + | putative permease PerM TERM 487 804718 - 804733 + G 91 -4.8 -5.86061 | opp_overlap 804718 AATTTAAGCAACGCA TATCTT ATTA AAGATA TTTTTTTTAATGAAG RP631 804505 - 805170 + | hypothetical protein TERM 488 806005 - 805986 - T 72 -3.6 -5.32565 | CAAGCAATGAAAAAA CCTTACAA TATT TTGCAAAG CTTTTCGTTGATTTG rpsT 806762 - 806490 - | 30S ribosomal protein S20 rplQ 807192 - 806782 - | 50S ribosomal protein L17 RP635 808227 - 807205 - | DNA-directed RNA polymerase subunit alpha RP636 808629 - 808246 - | 30S ribosomal protein S11 rpsM 809030 - 808653 - | 30S ribosomal protein S13 adk 809729 - 809088 - | adenylate kinase secY 811046 - 809745 - | preprotein translocase subunit SecY TERM 489 810412 - 810425 + g 72 -5.2 -4.75219 | opp_overlap 810412 GTTATTGCTATTAAA GGCG ACAATG CGCC TTTTCTTGATAATTC TERM 490 810846 - 810836 - G 70 -4 -4.98531 | overlap 810840 810842 TTGCTAAAGCAAAAA TAGA CAT TCTA CCTAACGACCCGCCA rplO 811502 - 811050 - | 50S ribosomal protein L15 rpmD 811707 - 811516 - | 50S ribosomal protein L30 rpsE 812259 - 811732 - | 30S ribosomal protein S5 TERM 491 812293 - 812313 + r 72 -8.3 -3.27674 | overlap 812292 AAAATTTTATTTTCT CTCTAGCTG CAT CAGCTAAAG CTTTTATAATACCGT rplR 812632 - 812276 - | 50S ribosomal protein L18 TERM 492 812373 - 812383 + g 80 -2.4 -5.66989 | ACTTCTTTTATACCT GCAG AAT CAGC TTTTTTTGCTATTTC rplF 813181 - 812648 - | 50S ribosomal protein L6 rpsH 813588 - 813190 - | 30S ribosomal protein S8 rpsN 813912 - 813607 - | 30S ribosomal protein S14 rplE 814469 - 813930 - | 50S ribosomal protein L5 rplX 814797 - 814456 - | 50S ribosomal protein L24 rplN 815162 - 814794 - | 50S ribosomal protein L14 rpsQ 815456 - 815223 - | 30S ribosomal protein S17 rpmC 815673 - 815458 - | 50S ribosomal protein L29 rplP 816076 - 815666 - | 50S ribosomal protein L16 TERM 493 815989 - 816015 + g 73 -8.8 -3.08522 | opp_overlap 815994, overlap 815988 815994 TAAGACCAAATGATC CAAAAGCAAGTG TCA TACCTGCTTTTG CTTTTGACATAACTC rpsC 816744 - 816091 - | 30S ribosomal protein S3 TERM 494 816369 - 816402 + g 76 -9.1 -3.19007 | gap 1, overlap 816368 816370 CTCTTTTTTCAAGCT G-TGCTGCTATAGT TTGAGCT ACTATAGCAGCATC TATATTAAATTTTCT TERM 495 816370 - 816400 + g 100 -12.8 -3.14203 | overlap 816369 816368 TCTTTTTTCAAGCTG TGCTGCTATAGT TTGAGCT ACTATAGCAGCA TCTATATTAAATTTT rplV 817105 - 816746 - | 50S ribosomal protein L22 TERM 496 817070 - 817085 + g 95 -6.2 -5.71295 | TCTAATAGATTTAGC TTTTGC CGTA GCAAAA TTTTTATTTTTCTGT rpsS 817393 - 817115 - | 30S ribosomal protein S19 rplB 818239 - 817418 - | 50S ribosomal protein L2 rplW 818536 - 818240 - | 50S ribosomal protein L23 TERM 497 818351 - 818371 + g 81 -2.7 -5.79588 | overlap 818351 818352 TCGTTTTTTCTTACC TTTAATATT TAA AATATTAAC TTTTTTTACTTTTAC TERM 498 818352 - 818370 + g 70 -6.2 -4.05313 | overlap 818351 818351 CGTTTTTTCTTACCT TTAATATT TAA AATATTAA CTTTTTTTACTTTTA rplD 819156 - 818533 - | 50S ribosomal protein L4 TERM 499 818951 - 818967 + g 91 -5.2 -5.88565 | CGTGCATTACCTGTA CCTTTT TGCTT AAAAGG TTTTTTTGTTGTCCC rplC 820048 - 819398 - | 50S ribosomal protein L3 rpsJ 820366 - 820049 - | 30S ribosomal protein S10 TERM 500 820452 - 820415 - R 100 -17.5 -4.39166 | opp_overlap 820421 820450 820451, overlap 820421 TTTCAGATATTAAAA TACAAATACCTATTATT TTTT AATAATAGGTATTTGTA AAATAAATTAATTAT TERM 501 820446 - 820421 - R 100 -10.7 -4.49352 | opp_overlap 820421, overlap 820415 ATATTAAAATACAAA TACCTATTATT TTTT AATAATAGGTA TTTGTAAAATAAATT TERM 502 820421 - 820446 + r 95 -10.7 -3.9009 | opp_overlap 820421 820415 ATATTAAAATACAAA TACCTATTATT TTTT AATAATAGGTA TTTGTAAAATAAATT tuf 821644 - 820460 - | elongation factor Tu TERM 503 821257 - 821272 + g 77 -7.6 -4.12456 | opp_overlap 821246, overlap 821256 AAAATACTACCATAG CAGGTA CACC TACCTG TTTTGCCAGTAATAT RP664 822162 - 822908 + | hypothetical protein TERM 504 823425 - 823415 - g 82 -5.4 -5.44119 | GCTATTTTAAAAAAA TGTG CTG CACA GGTTAATTACGAGTT TERM 505 824024 - 824003 - g 70 -5.1 -4.58685 | AAATTTGCTCAAAAA GTTGCAGAG TTTA CTCAACAAC CATTTAAAACTGCTC fumC 823256 - 824641 + | fumarate hydratase RP666 825003 - 826361 + | cell division protein FtsZ TERM 506 826553 - 826529 - T 70 -7.3 -3.70919 | overlap 826520 TTTAAATCTTAAGAA GATACATAAAA AAT TTTTAGGTATC AGTAGATATTAGAAT RP667 827440 - 826868 - | hypothetical protein TERM 507 826925 - 826943 + g 86 -7.4 -5.06451 | overlap 826927 TGGTATAAAATGTTT CAGCATTG ATT CAATGCCG TTTTTTAAGGTAATA TERM 508 826927 - 826941 + g 71 -8.6 -2.77166 | overlap 826925 GTATAAAATGTTTCA GCATTG ATT CAATGC CGTTTTTTAAGGTAA RP668 828706 - 827480 - | muropeptide permease AmpG RP669 830015 - 828792 - | putative ATP-dependent RNA helicase RHLE (rhlE) TERM 509 830467 - 830482 + r 70 -4 -5.12068 | gap 1, opp_overlap 830467 830469 CTCTGAGATTAACAG CATAGGC TTT GCCT-TG TTTTTCTTCAATGTC RP670 830656 - 830444 - | cold shock-like protein (cspA) TERM 510 830735 - 830755 + r 83 -11.3 -2.62043 | opp_overlap 830715 CTCAAATTTTAAGCC TCACCTAAT ATA ATTAGGTGA TAAATTCATTATGCA TERM 511 832063 - 832079 + r 73 -3.1 -5.50723 | opp_overlap 832053 832062, overlap 832062 832065 832077 832078 GAATATTTTAAACAC TTTTAAA AAG TTTAAGA TTTTTATTTTGATAA TERM 512 833877 - 833893 + r 75 -5.3 -5.02357 | opp_overlap 833890, overlap 833890 GCTCACTGAAAAGCT TTTAATT ACT AATTAAA TTTTATTTACTTATA ksgA 834710 - 833904 - | dimethyladenosine transferase RP673 835723 - 834836 - | hypothetical protein RP674 838042 - 835907 - | hypothetical protein TERM 513 838805 - 838784 - g 81 -8.1 -4.19238 | gap 1 CGTGCAAGGGGAAAA TTCCGGCCAT GAA ATGGC-GGAA GCAATTGAAGGATTT TERM 514 839106 - 839092 - g 72 -4.4 -5.16237 | AATCTTATGAAAAAA TATTAT TTA ATAATA CTAACCGATTAATTA xseA 838239 - 839600 + | exodeoxyribonuclease VII large subunit TERM 515 839649 - 839637 - f 72 -4.9 -5.05782 | overlap 839641 ATTGATTCTAAAAAA TACAT ACA ATGTA GATTGTAAAGCTTTT TERM 516 839841 - 839807 - f 80 -10.2 -2.83517 | opp_overlap 839809, overlap 839804 839830 ACTGACATAACAGCA GGGCATTATTACTTCT GAT AGAAGTAATAATGCTT ATTTCGTCTTGAAGA TERM 517 839809 - 839839 + F 100 -17.2 -4.08853 | opp_overlap 839807 839804 839830 TGACATAACAGCAGG GCATTATTACTTCT GAT AGAAGTAATAATGC TTATTTCGTCTTGAA TERM 518 840290 - 840280 - f 76 -2.6 -5.82172 | opp_overlap 840280 ACGAATATAAAAAAA TTAT TCA ATAA TGTAGTTGCAATTTG RP676 840678 - 841487 + | exodeoxyribonuclease III (xthA2) TERM 519 841834 - 841813 - f 75 -6.7 -4.5032 | opp_overlap 841813 841815 CATATTAATAATAAA TACACCTAT TATA ATAGATGTA GTTATCAGAGAATTA engA 841882 - 843225 + | GTP-binding protein EngA RP678 845014 - 843875 - | hypothetical protein RP679 845327 - 845037 - | hypothetical protein ubiE 846121 - 845324 - | ubiquinone/menaquinone biosynthesis methyltransferase RP681 847578 - 846307 - | hypothetical protein TERM 520 847477 - 847487 + g 70 -4 -4.88067 | opp_overlap 847477 CTCATGTTCATATAA TTCT TTT AGAA TTTTTATACCTAAAT RP682 849004 - 848123 - | hypothetical protein TERM 521 848916 - 848901 - G 90 -6.2 -5.55664 | opp_overlap 848896 848901 TTAGTATCAAAAAAA CAACTA GAAT TAGTTG TTTTAATATTTTTAC TERM 522 848901 - 848916 + g 76 -6.2 -4.60746 | opp_overlap 848901, overlap 848896 TTAGTATCAAAAAAA CAACTA GAAT TAGTTG TTTTAATATTTTTAC metG 850656 - 849130 - | methionyl-tRNA synthetase tdk 851264 - 850653 - | thymidylate kinase TERM 523 850789 - 850755 - G 83 -9.7 -3.5774 | gap 1, opp_overlap 850759, overlap 850759 ACTTAATTCTTTAAA GCAAGTATAGATTTTT TTAT AAAAATCTATACTT-C TTATATCAAATTTAT TERM 524 850786 - 850759 - G 93 -11.6 -3.51976 | opp_overlap 850759, overlap 850755 AATTCTTTAAAGCAA GTATAGATTTTT TTAT AAAAATCTATAC TTCTTATATCAAATT TERM 525 850759 - 850786 + g 100 -11.6 -3.89348 | opp_overlap 850755 850759 AATTCTTTAAAGCAA GTATAGATTTTT TTAT AAAAATCTATAC TTCTTATATCAAATT RP685 851809 - 853125 + | proline/betaine transporter (proP4) ubiA 854007 - 853159 - | prenyltransferase TERM 526 853752 - 853764 + g 71 -3.3 -5.20216 | opp_overlap 853743, overlap 853753 CAGATACAGCACCAC TGGCC AAA GGTCG TTTTTTAGTCCTCTC TERM 527 853965 - 853935 - G 91 -4.7 -5.89827 | overlap 853938 AAGCAGGAAAAAAAA CTAGCAAATAAGC TACCG GCTTATCTGCACG CATTAATTTAAAGAT TERM 528 853962 - 853938 - G 81 -9.4 -3.63095 | overlap 853935 CAGGAAAAAAAACTA GCAAATAAGC TACCG GCTTATCTGC ACGCATTAATTTAAA TERM 529 856074 - 856044 - gH 79 -9.9 -2.59266 | opp_overlap 856042 856041, overlap 856043 856042 AAAAATATGAAAATG CGCTTAGAGAATT GGATT AATTCTCTAAGCT GGGATTGGTGCATCA valS 854889 - 857333 + | valyl-tRNA synthetase TERM 530 858127 - 858108 - gf 88 -5.8 -5.54264 | opp_overlap 858082 AAATATTGAAAAAAA GAGTAAAT TTAT ACTTACTC CAGAATTGTTAAAGC RP688 857296 - 858189 + | hypothetical protein RP689 858232 - 859032 + | hypothetical protein TERM 531 859717 - 859727 + G 75 -4 -5.1963 | TGTCAAGCTAAGACC TGAT GCA ATCA TTTTTCTTCCTTCAG RP690 859097 - 860377 + | hypothetical protein RP691 863336 - 861366 - | hypothetical protein TERM 532 861862 - 861850 - G 76 -2.7 -5.50723 | TTACGAAAATAAAAA CAGAT ATA ATCTA AAATAAGTGTTGTCA TERM 533 861898 - 861869 - G 70 -5.9 -4.27465 | gap 1, opp_overlap 861869 TATAATCTAAAATAA GTGTTGTCAT-TGC CGA ACACATAACAACAC TCTTCCATCCATAAT TERM 534 862944 - 862916 - G 81 -5.6 -5.26316 | gap 1, opp_overlap 862940, overlap 862940 GTACTTTAGAAAAAA TGATATTAAATTC TAGT GAATTTA-TATCA CCGATATCATCTAGG TERM 535 864604 - 864625 + r 71 -6.7 -4.18711 | gap 1, overlap 864608 ATTCCAAAATACCTA CTGACACTGA CTA TCAGTGT-AG TTTAATTATTATTTT TERM 536 864608 - 864622 + r 71 -8.6 -3.07654 | overlap 864604 CAAAATACCTACTGA CACTGA CTA TCAGTG TAGTTTAATTATTAT TERM 537 864765 - 864749 - R 73 -2.2 -5.69023 | overlap 864751 AAAATACTAAAAAAA GGTACA TGTAT TGTGCC ATGTAACTAACAATA clpX 866091 - 864814 - | ATP-dependent protease ATP-binding subunit TERM 538 865838 - 865854 + g 73 -8.1 -3.41745 | TTGTAAACCGCTACC GCTAAAA TCT TTTTAGC TTGGTCTTGTCCAAC TERM 539 866191 - 866175 - R 89 -12.3 -2.87132 | opp_overlap 866167 TTTCGTCCTGAGATA CCGCTAC CAA GTAGCGG AATGAAAGTATAATT RP693 866757 - 866206 - | ribosomal-protein-alanine acetyltransferase (rimJ) TERM 540 866550 - 866540 - G 76 -5.4 -5.06816 | opp_overlap 866540 ATCCCCCAATAAAAA CTTC TAT GAAG TGTATATAAATTAGA RP694 867437 - 866754 - | hypothetical protein TERM 541 868449 - 868461 + G 75 -4.9 -5.03747 | overlap 868432 868455 AATGTTAATCGGTAG CATTA CTT TAATG TTTTTTGAAAGCTTT RP696 868003 - 869733 + | transport ATP-binding protein MsbA RP697 869978 - 870226 + | hypothetical protein TERM 542 870948 - 870980 + G 72 -4.9 -4.89233 | overlap 870949 870951 TAGGAGATAAGTACG GACGTAGACCAATTA TTA TAATTGGTCTACTAA TTTTTAATCTTGGTA TERM 543 870949 - 870979 + G 73 -8.4 -3.52455 | overlap 870948 870951 AGGAGATAAGTACGG ACGTAGACCAATTA TTA TAATTGGTCTACTA ATTTTTAATCTTGGT TERM 544 870951 - 870977 + G 100 -15.4 -3.32265 | overlap 870949 870948 GAGATAAGTACGGAC GTAGACCAATTA TTA TAATTGGTCTAC TAATTTTTAATCTTG RP698 870755 - 871930 + | bicyclomycin resistance protein (bcr2) RP699 872043 - 873290 + | hypothetical protein RP700 873283 - 873948 + | glutamine transport ATP-binding protein GLNQ (glnQ1) RP701 874164 - 875123 + | hypothetical protein RP702 876074 - 877348 + | hypothetical protein TERM 545 878902 - 878922 + G 72 -8.3 -3.25084 | overlap 878901 GTCTCAAAGCGAGTA GCACTAGTA TGA TACTAGGGC ATTTTGGTGTTGCAC RP703 877341 - 879353 + | cytochrome C-type biogenesis protein CCMF (ccmF) TERM 546 881231 - 881182 - T 76 -9.7 -2.8092 | gap 1, opp_overlap 881196, overlap 881173 881196 TAAGACCTTATTACA TAAGT-AGAAAAAAAGCCCATTTT TTC AAAGTGGGCTTTTTTTCTTAATCA AGTTATAAACTTACT TERM 547 881196 - 881216 + T 100 -10.5 -5.84381 | opp_overlap 881182 881196 ATAAGTAGAAAAAAA GCCCATTTT TTC AAAGTGGGC TTTTTTTCTTAATCA TERM 548 881216 - 881196 - T 100 -8.3 -5.73339 | opp_overlap 881196, overlap 881182 ATAAGTAGAAAAAAA GCCCATTTT TTC AAAGTGGGC TTTTTTTCTTAATCA RP704 886195 - 881264 - | cell surface antigen (sca5) RP706 888507 - 887563 - | hypothetical protein RP707 889025 - 888552 - | hypothetical protein RP708 889507 - 889220 - | integration host factor alpha-subunit (himA) TERM 549 889431 - 889420 - G 71 -2.2 -5.38321 | overlap 889413 AAATATTAGAAAAAA CCGT ATTA ACGA TTGCTTCACACAAAT RP709 892405 - 892701 + | hypothetical protein TERM 550 895673 - 895655 - T 70 -7.5 -3.4684 | opp_overlap 895657 CATAATATCAACTAA TACGACA GTGTT TGTCGTA TATAAATAGCCTATT RP712 897066 - 896602 - | hypothetical protein RP713 897611 - 897117 - | hypothetical protein RP714 898037 - 897714 - | ankyrin, BRAIN variant 2 (ank2) TERM 551 899130 - 899142 + H 70 -3.4 -5.29742 | GAGTGCTTTAAATCT GCTT CAATA AAGC TTTCTTTTTTTATCT TERM 552 900852 - 900871 + G 75 -9.4 -2.90723 | CTTGGAGATGTATTA CCTAGAAA TGTA TTTCTAGG TCTAATTCAAAATAA RP716 899334 - 901475 + | hypothetical protein TERM 553 901874 - 901828 - T 100 -14.7 -4.14243 | opp_overlap 901831, overlap 901831 TATTTCATTTGAAAA GTATTCAGCATCATCTTGCTC ATTAG GAACAAGATGATGCTGAATGG TTAGAAAGTAATGTT TERM 554 901871 - 901831 - T 100 -20.8 -3.09831 | opp_overlap 901831, overlap 901828 TTCATTTGAAAAGTA TTCAGCATCATCTTGCTC ATTAG GAACAAGATGATGCTGAA TGGTTAGAAAGTAAT TERM 555 901831 - 901871 + T 100 -18.6 -2.7185 | opp_overlap 901831 901828 TTCATTTGAAAAGTA TTCAGCATCATCTTGCTC ATTAG GAACAAGATGATGCTGAA TGGTTAGAAAGTAAT RP718 903746 - 902874 - | lipid A biosynthesis lauroyl acyltransferase TERM 556 903727 - 903737 + gT 72 -2.6 -5.40004 | ATTAAGTATCTTAGC TTTT TTA AAAA TTTTTTCATTTAATA lpxK 904686 - 903709 - | tetraacyldisaccharide 4'-kinase TERM 557 904991 - 905007 + r 87 -6.6 -5.3658 | opp_overlap 904984 904993 AATCAATACCTCAAG GAGAAC ATTTC GTTCTC TTTTCTTTTTATAAT TERM 558 906643 - 906657 + r 76 -4.3 -5.28176 | opp_overlap 906643 TTACACTAACTAAAC TGCTT TTTCT AAGCA TTTTTTATGAATGCA ligA 908720 - 906651 - | NAD-dependent DNA ligase LigA tgt 909943 - 908858 - | queuine tRNA-ribosyltransferase TERM 559 910807 - 910793 - R 71 -5.8 -4.63486 | opp_overlap 910793 910792 910805 AGTGTTCTAAGAAAA TTAAGT ACA ACTTAA ATATATATTTATACT RP722 911899 - 911453 - | hypothetical protein RP723 912192 - 911908 - | hypothetical protein TERM 560 911999 - 912009 + g 70 -5.4 -4.66057 | opp_overlap 911999 GACTCACATAAATCA GCTA AAT TAGC TTTTCCTTTCTCTAT TERM 561 912316 - 912296 - R 100 -11.3 -5.38549 | opp_overlap 912301 CTTAAATAATAAAAA CTGAATCTA AAC TAGATTCAG TCAAATTTAATTATT RP724 913013 - 912564 - | hypothetical protein RP725 913341 - 913039 - | hypothetical protein rnhA 913787 - 913329 - | ribonuclease H RP727 914277 - 913798 - | hypothetical protein TERM 562 914197 - 914207 + g 72 -4 -5.11112 | ATCCCAATATAAATT TTCA TGC TGAA TTTTTGTTAGAATTT RP730 915067 - 915879 + | hypothetical protein TERM 563 916183 - 916155 - g 75 -4.7 -5.09225 | opp_overlap 916161 916162, overlap 916162 ATTTTATTTAAAAAA GAAAATACTAATT ATA AATTAGCTTTCTC TGAAATACCTCTACT TERM 564 916176 - 916162 - g 70 -5.8 -4.32882 | opp_overlap 916162 916161, overlap 916155 TTAAAAAAGAAAATA CTAATT ATA AATTAG CTTTCTCTGAAATAC coaE 915873 - 916448 + | dephospho-CoA kinase TERM 565 916959 - 916971 + G 70 -6.3 -4.17023 | opp_overlap 916958 TTGCACTAACAGGAG GTAGA CAA TCTAC TTTTAAGATGATTAA RP732 916436 - 917125 + | DNA polymerase III subunit epsilon TERM 566 917426 - 917406 - g 77 -8.5 -3.70742 | overlap 917422 AAAAGTGCAAGAGAA TTTACTTTA TCA TAAAGTAAA AATCACAGGTCAATT RP733 917251 - 917985 + | surfeit locus protein 1 (surf1) TERM 567 919922 - 919875 - g 85 -2.4 -6.06723 | gap 2, opp_overlap 919882, overlap 919879 919883 GCTTGTAAAAAAAAA TGAT-CATA-CTTTATGGGAAG TCTTAT CTTCACATAAAGATATATATCA TAAGTTAGATTCCAT RP734 918034 - 920502 + | ATP-dependent nuclease subunit A (addA) TERM 568 922202 - 922190 - g 78 -3.3 -5.58179 | opp_overlap 922191, overlap 922191 922198 CAGCAGAAGAAAAAA TGAGC ATA GCTCT TGATAAAGCTGTAAT TERM 569 922201 - 922191 - g 71 -6.8 -3.9328 | opp_overlap 922191, overlap 922190 922198 AGCAGAAGAAAAAAT GAGC ATA GCTC TTGATAAAGCTGTAA RP735 921535 - 922494 + | acyl-carrier-protein S-malonyltransferase TERM 570 922714 - 922728 + T 75 -7.2 -4.2558 | CTATTCATAGTATTA GTAGTA TAG TACTAC TTTTGATAAAAACTA TERM 571 923421 - 923435 + T 74 -8.6 -3.31792 | opp_overlap 923433, overlap 923409 923408 AGTGGCCGAAGGCGG CGGTTT GCT AAACCG TTATACGGGTCATAC RP737 925359 - 924181 - | acetyl-CoA acetyltransferase RP738 926375 - 925356 - | poly-BETA-hydroxybutyrate polymerase (phbC1) TERM 572 925865 - 925852 - G 88 -3.1 -6.02914 | overlap 925863 CTTATATAAAAAAAA TGAGA AAAA TCCCA GGGACAGGTAAGTAA TERM 573 927489 - 927474 - g 85 -4.7 -5.56263 | ATCATAAAACAAAAA GCAGT AGATCA ACTGC ACAACGGATGGGACT TERM 574 928180 - 928158 - g 76 -5 -5.14163 | overlap 928162 ATGCAGTAAGAAAAA TATATTTTGA ATA TCAAAAAATA GCCTGAAATAAAATT RP739 926684 - 928186 + | ADP,ATP carrier protein RP740 929877 - 928966 - | hemolysin C (tlyC) TERM 575 929870 - 929880 + g 86 -2.6 -6.01187 | TCGTGCTTTGAAGAT TTTA ACA TAAA TTTTTTTATTTAGTT RP741 930436 - 929894 - | putative metalloprotease TERM 576 930454 - 930474 + r 74 -8.3 -3.33151 | opp_overlap 930456, overlap 930449 930473 GAATTATTTTGTGAA TACCGAGAT CTG ATCACGGTA TGTTACTTTAACACA RP742 931393 - 930500 - | lipoyl synthase glyA 932648 - 931386 - | serine hydroxymethyltransferase RP744 933375 - 932728 - | hypothetical protein RP745 933801 - 933478 - | glutaredoxin-like protein GRLA (grxC2) TERM 577 933736 - 933754 + g 78 -3.2 -5.52096 | CTTAGTACCTTTCAT GAACAA TACTACT TTGTTC TTTTTTATTGCATTT RP746 933854 - 934492 + | endonuclease III (nth) RP747 936081 - 935239 - | hypothetical protein TERM 578 935367 - 935384 + g 70 -4.3 -4.91046 | TTAAGCAAAATTCTA TAAATTT TTCT AAATTTA TTTGTTTATTTTGTA TERM 579 935618 - 935604 - G 74 -5 -4.93877 | CTGTATCAAAGAAAA TCAAAG TAG CCTTGA GATTTACTAGTTCAG RP748 936105 - 937220 + | hypothetical protein tatA 937467 - 937303 - | twin argininte translocase protein A RP750 937548 - 938153 + | phosphatidylglycerophosphatase A (pgpA) rplU 938350 - 938667 + | 50S ribosomal protein L21 rpmA 938692 - 938952 + | 50S ribosomal protein L27 RP753 939203 - 940543 + | aspartate kinase RP754 940952 - 941443 + | hypothetical protein TERM 580 941877 - 941887 + T 71 -5.4 -4.66163 | AGCGCACAAAATGCT CTTG TAT CAAG TTTTTAAATGACACT RP755 943707 - 942427 - | proline/betaine transporter (proP5) RP756 944307 - 943990 - | hypothetical protein RP757 944889 - 944665 - | hypothetical protein RP758 949638 - 944893 - | hypothetical protein TERM 581 945883 - 945863 - G 100 -12.7 -2.87014 | overlap 945860 AACTCATGATAAGCA GCTCTCTTA CTG TAAGAGAGC AATACACAAAGCTCA TERM 582 946777 - 946791 + g 70 -5 -4.61231 | opp_overlap 946788 ATCTCCTATACCTAC GACAGT AAT ATTGTC TTTTTGGACATCTAA TERM 583 948213 - 948194 - G 71 -2.1 -5.46706 | AGTTTAAAATAAAAA TCTTCAC TCCAAC GTGTAGA TATACGATCTAAATC TERM 584 950312 - 950302 - g 70 -4 -4.91459 | TAACACTCATAAAAA CATT GTA AATG AAATATCTAATTATC trmE 949721 - 951058 + | tRNA modification GTPase TrmE TERM 585 951448 - 951407 - f 77 -7.5 -4.16301 | opp_overlap 951414, overlap 951411 951412 951414 CACATTATACATAAA TTAAGCAGTACTATATTCT CATC AGTATATAGTACTGTTGAA GGAGTTTTTAGAAAA TERM 586 951444 - 951411 - f 76 -8.3 -3.67481 | opp_overlap 951414, overlap 951407 951412 951414 TTATACATAAATTAA GCAGTACTATATTCT CATC AGTATATAGTACTGT TGAAGGAGTTTTTAG TERM 587 951443 - 951412 - f 88 -11.8 -2.79766 | opp_overlap 951414, overlap 951411 951407 951414 TATACATAAATTAAG CAGTACTATATTCT CATC AGTATATAGTACTG TTGAAGGAGTTTTTA TERM 588 951414 - 951441 + F 71 -8.6 -3.03903 | opp_overlap 951414 951412 951411 951407 TACATAAATTAAGCA GTACTATATTCT CATC AGTATATAGTAC TGTTGAAGGAGTTTT RP760 951473 - 952594 + | hypothetical protein TERM 589 952985 - 952952 - f 93 -9.9 -4.1399 | gap 1, overlap 952979 952981 CCATTGATACAGAAA CACTATGTATG-TATT ACT AATAACATACACAGTG CCACTGCATCTACAA TERM 590 954198 - 954174 - g 77 -8.7 -3.60971 | AGGGCAACGTCCAAA TGTTGATATAG AAG CAATATCAACA GGCTCACTTGGGCTA recA 954073 - 955095 + | recombinase A fabG 955097 - 955822 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 591 955912 - 955879 - f 88 -8.5 -4.78848 | gap 1, opp_overlap 955893, overlap 955904 CTTTTAAAGAGAAAA TGCTTATGAATATTTA TTT CAAATATTCAT-AGCA ATGAAAATAAAATCT acpP 955989 - 956234 + | acyl carrier protein TERM 592 956530 - 956515 - g 74 -6.2 -4.48333 | overlap 956527 ATAGACTAAGTAAAA TGGATA AATT TATCCA TTACGGAATCGCAGC RP764 956268 - 957548 + | 3-oxoacyl-(acyl carrier protein) synthase II gmk 958715 - 958122 - | guanylate kinase TERM 593 958438 - 958418 - G 75 -5.5 -4.71776 | overlap 958420 CAATATCGAATAAAA CATCAAAGC CTT GCTTTAATA ACATTTTAACATATT RP766 959110 - 958832 - | hypothetical protein RP767 960575 - 959661 - | rod shape-determining protein MREC (mreC) RP768 961618 - 960578 - | rod shape-determining protein MREB (mreB) RP769 962914 - 961826 - | hypothetical protein TERM 594 963392 - 963373 - R 100 -7.9 -5.52807 | opp_overlap 963372 963373 AATAATAAAGAAAAA GTCGAGT AATAAA ACTCGAC CTTTTAAAATAAATA TERM 595 963430 - 963402 - R 77 -7.8 -4.09685 | opp_overlap 963406, overlap 963406 CTCGACCTTTTAAAA TAAATAAAATTA GTAAA TAATTTTATTTA TGTAAAACTGTTACA RP771 963891 - 963424 - | peptidoglycan-associated lipoprotein precursor (pal) TERM 596 963810 - 963821 + g 87 -2.2 -6.19302 | GATGCACCATACCGG CCAT TTGT GTGG TTTTTTTTGTTGTAT RP772 965160 - 964207 - | 3-oxoacyl-(acyl carrier protein) synthase III rpmF 965371 - 965174 - | 50S ribosomal protein L32 RP774 965465 - 965926 + | hypothetical protein RP775 966118 - 967029 + | cell division protein FTSY (ftsY) TERM 597 967519 - 967506 - g 74 -2.3 -5.626 | TATTCTAGAAAAAAA CGGTT ATGA AGCCG ATGATATTATTGCAA TERM 598 968138 - 968122 - g 70 -8.1 -3.08173 | overlap 968112 AGTAATGCTAGTGAA TTAGCAA ATT TTGCTAA AGAAGCTGAGAGAAT TERM 599 968475 - 968465 - g 70 -4 -4.88067 | ATCTATTTACAAAAA CTTT AAC AAAG GACAATATAATTAAT TERM 600 968834 - 968816 - g 70 -6 -4.21812 | CTTTAGCTAAAACAA GCTCTTAC TCA ACAAGAGC TGGAATACTCAAAAA RP776 967183 - 969786 + | DNA polymerase I dnaE 975121 - 971573 - | DNA polymerase III subunit alpha RP779 976553 - 975249 - | UDP-glucose 6-dehydrogenase (Udg) TERM 601 975665 - 975649 - G 89 -9.5 -4.20516 | opp_overlap 975648 975647 TCTCCATCTAACAAA GTAGCTA TTT TAGCTAC CATATTACTTGGCCG TERM 602 976703 - 976713 + H 75 -5.4 -5.05782 | GTTACTTCAGATTTA GTAC TGC GTAC TTTTTTAGGATGACT TERM 603 977943 - 977921 - g 71 -7.8 -3.46873 | overlap 977919 GCAAATTCAATAATA GAGCTAATAA TTC CTATTAGCCC AGATGTCCCTAATAG RP780 976799 - 979306 + | hypothetical protein RP781 979316 - 980581 + | muropeptide permease AmpG RP782 980757 - 981512 + | hypothetical protein RP783 981490 - 982767 + | seryl-tRNA synthetase TERM 604 984258 - 984246 - g 74 -9.1 -2.85147 | opp_overlap 984243, overlap 984245 GGTAATCAATATAAC CCCTG GGG CAGGG CTATAACTTTGCTAC RP784 983022 - 985454 + | VIRB4 protein precursor (virB4) TERM 605 985785 - 985775 - g 78 -6.8 -4.63218 | CTCCTTGGAATAAAA GCGA CGG TCGC AATAATGATACTTGT TERM 606 985925 - 985913 - g 81 -9.1 -3.64599 | opp_overlap 985913 GTATTAGAGTTCAAA GCTGC AAT GCAGC AGCTTGTTGGCACCA TERM 607 986647 - 986637 - g 84 -6.8 -5.31877 | opp_overlap 986637 986635 ATGTAGCATAAAAAA TGCC AGT GGCA TATTTGACCAATCTT RP785 985567 - 989076 + | hypothetical protein TERM 608 989606 - 989629 + G 79 -8.4 -4.00084 | opp_overlap 989606 CTAGAAGGACAGAAA TTTGTTATTA AACG TAATAACAAA TTATATTTTAGTACT TERM 609 989629 - 989606 - g 81 -8.4 -4.15657 | opp_overlap 989606 CTAGAAGGACAGAAA TTTGTTATTA AACG TAATAACAAA TTATATTTTAGTACT RP786 989081 - 989974 + | tellurium resistance protein TERC (terC) RP787 990030 - 990212 + | hypothetical protein RP788 990194 - 990736 + | hypothetical protein RP789 990824 - 992485 + | hypothetical protein TERM 610 992688 - 992704 + G 75 -5.9 -4.7173 | GCTCAGGGTTGATGA TTTTGCT TGG AGCAGAA TTTTTAGCTATGCTA RP790 992558 - 993175 + | NADH dehydrogenase subunit J RP791 993168 - 993482 + | NADH dehydrogenase subunit K TERM 611 995042 - 995024 - g 81 -7.4 -4.60797 | opp_overlap 995028, overlap 995025 CCTTTATATATAAAA TTACTGCC TAT GGCAGTAG GCATTGTTGGAATTA TERM 612 995041 - 995025 - g 87 -10.9 -3.35996 | opp_overlap 995028, overlap 995024 CTTTATATATAAAAT TACTGCC TAT GGCAGTA GGCATTGTTGGAATT RP792 993482 - 995443 + | NADH dehydrogenase subunit L RP793 995593 - 997068 + | NADH dehydrogenase subunit M RP794 997425 - 998018 + | cytochrome c biogenesis protein CcmA RP795 999854 - 999375 - | NADH dehydrogenase subunit I RP796 1000879 - 999860 - | NADH dehydrogenase subunit H RP797 1003050 - 1001023 - | NADH dehydrogenase subunit G TERM 613 1001497 - 1001486 - G 73 -5.8 -4.53163 | opp_overlap 1001486 TGATATATTATAAAA GCTG ATTT CAGC TTATCAAACGGTATA RP798 1003409 - 1003053 - | hypothetical protein RP799 1006219 - 1003583 - | aconitate hydratase TERM 614 1004488 - 1004502 + g 76 -8.6 -3.42605 | overlap 1004486 CTTCATCTATCTCTT TTTGGC TTG GCCAAA TATCTTTTAAATAAA TERM 615 1005257 - 1005273 + g 70 -5.9 -4.258 | TTCTCTACCTGTTAC CTCTAGA TAT TTTAGAG TTTCTTGATCAATCG atpC 1006710 - 1006372 - | F0F1 ATP synthase subunit epsilon RP801 1008248 - 1006824 - | F0F1 ATP synthase subunit beta RP802 1009223 - 1008357 - | F0F1 ATP synthase subunit gamma RP803 1010848 - 1009310 - | F0F1 ATP synthase subunit alpha TERM 616 1010886 - 1010925 + r 79 -8.7 -3.83205 | opp_overlap 1010886 1010878, overlap 1010883 AATCCAATGTATGAA CCACGGGATCTAATA TTGTTACTTT TATTGGCTCCCGTGG TTTCATATACGAGAT RP804 1011536 - 1010985 - | F0F1 ATP synthase subunit delta TERM 617 1011500 - 1011484 - G 79 -8.1 -3.97444 | ATATTATCAAGCAAA GCATTAT TAA ATAATGC TACAGCATAATTTTG RP805 1013034 - 1011655 - | dihydrolipoamide dehydrogenase RP806 1013715 - 1013284 - | hypothetical protein RP807 1017867 - 1015504 - | penicillin-binding protein 1A (mrcA) TERM 618 1017055 - 1017083 + g 70 -5.4 -4.58585 | gap 1, overlap 1017051 CACTTCTTCTCGAAC CTGTT-CAGCATA ATAG TCTGCTGTAACAG TTTCTTCTTTAGCTC RP808 1019208 - 1017871 - | hypothetical protein RP809 1020413 - 1019910 - | hypothetical protein RP810 1022109 - 1020382 - | glutathione-regulated potassium-efflux system protein KEFB (kefB) RP811 1022432 - 1022106 - | hypothetical protein TERM 619 1022622 - 1022599 - g 75 -4 -5.30686 | AAGAGTTAGAAAAAA TACTTAAAAA ATCT TTTCCAAGTA GTGTAATAAAAATTA RP812 1022568 - 1022801 + | hypothetical protein TERM 620 1022806 - 1022785 - f 75 -5.3 -4.94902 | CAATCAGCATAAAAA CTATTTCAA TACC TTAAAATAG TTACAAATATTGAAA TERM 621 1023503 - 1023525 + F 76 -9.4 -2.91264 | opp_overlap 1023505 1023509, overlap 1023505 1023509 ATATTATAGGGACAT TATAAATACA CAA TGTATTTATA TATATGCATGCACAG infA 1024469 - 1024684 + | translation initiation factor IF-1 TERM 622 1025096 - 1025085 - g 74 -3 -5.38047 | opp_overlap 1025085 CATTTAGACAAAAAA TAGT TCAG ACTA TTATTAAGTTTAAAA maf 1024697 - 1025365 + | Maf-like protein RP816 1025836 - 1025405 - | DnaK suppressor protein xerC 1026846 - 1025929 - | site-specific tyrosine recombinase XerC TERM 623 1026762 - 1026781 + g 71 -2.2 -5.41143 | opp_overlap 1026762 CATTATTATAAGCAA TTACTGTA TTAT TAGAGTAA TTTTTTTGCAAAATG TERM 624 1027249 - 1027225 - g 77 -8.1 -3.78861 | overlap 1027215 1027223 1027244 TTATACAAAATAATA TTAATACTATT TTA AATAGTACTAA AGAAGTAATAAATTC TERM 625 1027390 - 1027368 - g 100 -12.2 -3.15427 | overlap 1027381 AATATTGCTTATGAA GCTTCAAATA AAA TATTTGAAGC CGCAAATAAACATAT RP818 1027011 - 1027490 + | hypothetical protein TERM 626 1027507 - 1027533 + T 85 -11 -2.79501 | opp_overlap 1027504, overlap 1027512 AGGCACTAACACCTG TCATACCGCAAT CAA GTTGTGGTATGA TATACTAAAAATGTA RP819 1028155 - 1027538 - | hypothetical protein RP820 1030044 - 1028290 - | poly-BETA-hydroxybutyrate polymerase (phbC2) RP821 1031571 - 1030093 - | hypothetical protein RP822 1033259 - 1031673 - | hypothetical protein TERM 627 1031759 - 1031769 + g 72 -2.6 -5.43866 | overlap 1031753 CAGAATTTTTAATAT TATA TAT TATA TTTTTTTCCAAATTG TERM 628 1033311 - 1033333 + r 72 -8.4 -3.24188 | opp_overlap 1033306 ATAAAAAAGACTGGA TACCGGTGGT CAA GCCACGGGTA TTAGTACTAATATAC TERM 629 1033398 - 1033378 - R 95 -5.5 -6.0458 | opp_overlap 1033377 ATAAAGCAAAAAAAA CTCTATAGT CAA ACTATATAG GATCTTTTATTATTT RP823 1038434 - 1036200 - | cell division protein FTSK homolog (ftsK) TERM 630 1038577 - 1038553 - H 87 -10.3 -3.27476 | opp_overlap 1038552 1038551, overlap 1038538 1038551 1038557 CATATTTAAAAAGTA TGAATAAAAAA TGC TTTTTTATTCA AGATTTTATTGAAAA RP824 1039287 - 1040066 + | methionine aminopeptidase TERM 631 1040852 - 1040868 + G 76 -2.9 -5.55855 | overlap 1040854 AATAGTTCACTTAAT TTGCGCA GCT TGTGCTA TTTTGTTTTTTTCAC TERM 632 1040854 - 1040866 + G 71 -5.5 -4.38305 | overlap 1040852 TAGTTCACTTAATTT GCGCA GCT TGTGC TATTTTGTTTTTTTC RP825 1040523 - 1041503 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (mraY2) RP826 1041500 - 1041826 + | hypothetical protein TERM 633 1042009 - 1042030 + T 100 -11.7 -4.67904 | opp_overlap 1042009 TGATATAAACAAAAA GGGTCTTTA TTAA TAAAGACCC TTTTTGGGATTAATG TERM 634 1042030 - 1042009 - T 100 -11.7 -5.42975 | opp_overlap 1042009 TGATATAAACAAAAA GGGTCTTTA TTAA TAAAGACCC TTTTTGGGATTAATG RP827 1042826 - 1042080 - | hypothetical protein RP828 1043716 - 1043048 - | hypothetical protein RP829 1044202 - 1043873 - | ferredoxin (fdxA) RP830 1044899 - 1044207 - | HEME exporter protein C (ccmC) RP831 1045490 - 1045044 - | hypothetical protein RP832 1046418 - 1045516 - | protein P34 (p34) TERM 635 1046483 - 1046461 - H 74 -5 -5.09762 | opp_overlap 1046460 1046461 1046463 GTTTAACAAAGAAAA TATAAAATTC AAT GAGTTTTATA CTTTACAAAATTCTA RP833 1046540 - 1047019 + | 17 kDa common-antigen RP834 1047108 - 1047809 + | iron ABC transporter ATP-binding protein uvrA 1051696 - 1048835 - | excinuclease ABC subunit A TERM 636 1050050 - 1050040 - G 74 -6.8 -4.30576 | GCTCTACTACCAAAA CGGT ATT ACCG AGATCCCTAAGCCTT TERM 637 1050968 - 1050984 + g 71 -6.6 -3.92869 | CTGACTCTTAACTGC TTGTGG TAATT CCACAA TTTCTAAATACGTAA TERM 638 1052113 - 1052094 - g 70 -3.6 -5.08601 | opp_overlap 1052098, overlap 1052096 TCAGGTCAAGAAAAA TATACAAC GGAA GTTGTATT ACAAAACTTTAATTC TERM 639 1052111 - 1052096 - g 70 -6.2 -4.16909 | opp_overlap 1052098, overlap 1052094 AGGTCAAGAAAAATA TACAAC GGAA GTTGTA TTACAAAACTTTAAT RP836 1051803 - 1052261 + | single-strand DNA-binding protein RP837 1052386 - 1053207 + | hypothetical protein RP839 1055354 - 1055671 + | hypothetical protein TERM 640 1055892 - 1055913 + G 91 -8.9 -4.83169 | AATTTAATGATTCAC TCTCTTTAT AGTA ATAAAGAGA TTTTTATGAGAGAAT TERM 641 1057408 - 1057398 - g 75 -4 -5.19916 | opp_overlap 1057405 AAAATATCTAAAAAA CTTA CTT TAAG CCCTGCTTGTCTTGC TERM 642 1057500 - 1057483 - g 72 -4.9 -4.94262 | TAGAGCAAAAACAAA TAGCAAA TGCT TCTGCTA AAAATTTAGAACTAA RP840 1055829 - 1057694 + | heat shock protein 90 RP841 1057857 - 1059101 + | 5-aminolevulinate synthase TERM 643 1060563 - 1060550 - g 72 -6.7 -4.16182 | GTAGTACAAATTAAA GCAGT ACAT ACTGC AGAACCTACTATTAT tig 1059833 - 1061170 + | trigger factor TERM 644 1061236 - 1061248 + T 77 -4.9 -5.27769 | opp_overlap 1061231 1061236, overlap 1061232 TCGTAGATTAGCTAA TACTA TAT TAGTA TTTTTGATTTTTTAT obgE 1062238 - 1061243 - | GTPase ObgE gltA 1063857 - 1062547 - | type II citrate synthase RP845 1065220 - 1064444 - | hypothetical protein RP846 1065237 - 1066178 + | pseudouridylate synthase trmB 1066640 - 1068196 + | bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase RP848 1069103 - 1068162 - | hypothetical protein TERM 645 1069129 - 1069141 + r 70 -7.7 -3.30771 | overlap 1069125 TGGTTTCAATTCAGT GTCAC ACT GTGAC TTGTCAACAATATCC glyS 1071258 - 1069264 - | glycyl-tRNA synthetase subunit beta glyQ 1072120 - 1071251 - | glycyl-tRNA synthetase subunit alpha RP851 1072936 - 1072307 - | hypothetical protein RP852 1074205 - 1072958 - | proline/betaine transporter (proP6) TERM 646 1074349 - 1074324 - R 78 -8.3 -3.93166 | opp_overlap 1074323 CTTTTAAAAAAGCAA GCTATCTCTAC CCTA GTAGGGACAGC GTATATCATTAAACA RP853 1075385 - 1074417 - | hypothetical protein RP854 1076030 - 1075392 - | hypothetical protein RP855 1077756 - 1076194 - | hypothetical protein TERM 647 1078451 - 1078464 + G 77 -8.1 -3.83864 | TCTATGGGTGATACT GGTCC TTGT GGACC TTGTTCTGAAATTTT alaS 1077947 - 1080580 + | alanyl-tRNA synthetase TERM 648 1082432 - 1082405 - T 93 -10.2 -4.17132 | opp_overlap 1082408, overlap 1082408 AAATTTTTGAATAAA TAATATTAAAGA TTTT TCTTTAATATTA TAAGATATTCTTTTT TERM 649 1082408 - 1082429 + T 70 -7.5 -3.37876 | opp_overlap 1082405 1082408 TTTTTGAATAAATAA TATTAAAGA TTTT TCTTTAATA TTATAAGATATTCTT TERM 650 1082429 - 1082408 - T 78 -7.5 -4.20367 | opp_overlap 1082408, overlap 1082405 TTTTTGAATAAATAA TATTAAAGA TTTT TCTTTAATA TTATAAGATATTCTT truA 1083216 - 1082455 - | tRNA pseudouridine synthase A RP858 1085196 - 1083289 - | RNA polymerase sigma factor RpoD TERM 651 1084051 - 1084061 + g 76 -6.8 -4.37554 | TATCATATCTTTTTT CGCT TGC AGCG TTTGTCTTTCACTTT TERM 652 1084420 - 1084438 + g 72 -6.2 -4.20875 | opp_overlap 1084423, overlap 1084417 TGAAACCTCATTTAT TAATAATT CTA AATTATTA TTATATTTTTTGCTA dnaG 1087065 - 1085215 - | DNA primase TERM 653 1086858 - 1086832 - GR 81 -6 -5.25799 | AAAACAATAGAAAAA TCTCTTACTATC ACT AACAGTAAAAGA TGGTGTCTTTTCTTG RP860 1087615 - 1087001 - | hypothetical protein greA 1087886 - 1088374 + | transcription elongation factor GreA RP862 1088845 - 1088447 - | NAD(P) transhydrogenase subunit alpha (pntAB) RP863 1089971 - 1088820 - | alanine dehydrogenase PntAa TERM 654 1089336 - 1089324 - GH 70 -6.3 -4.12532 | opp_overlap 1089324 1089323 TTCTGGAGAGACAAA CTTAG CTC CTAAG CTTTCTACCTGTTCT TERM 655 1089820 - 1089782 - GH 70 -6.1 -4.12254 | gap 1 CAGCATCAGAAATAA TTTCAAGCGGCACTGAAG ATAT CTT-AGTGCCGACTGCAA CATATTCTTCATCAA TERM 656 1090025 - 1090001 - H 79 -8.1 -4.10731 | overlap 1089996 AATAATATAATTAAA GTATTTTAAAC ATA ATTTAAAATAC AAAACAATAAAAATG RP864 1090038 - 1090679 + | hypothetical protein RP865 1090829 - 1092454 + | DNA polymerase III subunits gamma and tau RP866 1092459 - 1092782 + | hypothetical protein RP867 1093585 - 1092890 - | hypothetical protein RP868 1095239 - 1094517 - | glutamine transport ATP-binding protein GLNQ (glnQ2) TERM 657 1094896 - 1094909 + g 72 -6.7 -4.08557 | GTAAGTAATTCAATT GCCAT AGAA ATGGC TTGTTCTTTCGGCAG RP869 1095992 - 1095243 - | hypothetical protein RP870 1096004 - 1096666 + | hypothetical protein RP871 1096750 - 1097832 + | hypothetical protein RP872 1098302 - 1097838 - | DNA polymerase III subunit chi RP874 1099716 - 1098565 - | succinyl-diaminopimelate desuccinylase RP875 1101053 - 1100529 - | hypothetical protein lipB 1101679 - 1101050 - | lipoyltransferase rpsP 1102711 - 1102376 - | 30S ribosomal protein S16 TERM 658 1102504 - 1102529 + g 83 -10.5 -3.32966 | overlap 1102502 TTGCGACTCGCTCAG TTGGCTTAGCA CCAG TGCCAAGCCAA TATTCTATACGATCT rpmG 1102886 - 1102716 - | 50S ribosomal protein L33 TERM 659 1102860 - 1102872 + g 73 -3.5 -5.29846 | ACTTACTAGCCTTAC TAAAA CAT TTTTA TTTTTCTTTGCCATT mutL 1104811 - 1103024 - | DNA mismatch repair protein TERM 660 1105448 - 1105464 + H 71 -8.1 -2.94561 | opp_overlap 1105448 1105447 AAGGTATTCTTAAAC TTAACTG TTA CAGTTAA TGCTATTTGTTACAG RP881 1105935 - 1107206 + | proline/betaine transporter (proP7) TERM 661 1107305 - 1107295 - g 70 -5.4 -4.61868 | overlap 1107290 TATGCACAGATAAAA GGTT TAA AACC GGCTAAGTTTGTACG TERM 662 1107635 - 1107618 - g 71 -4.9 -4.79352 | overlap 1107619 TTATCCAGAAGAAAA CGAAACT GCAA AGTTTCA TACAGCTTTTAAAGA RP882 1107190 - 1108029 + | coproporphyrinogen III oxidase TERM 663 1108661 - 1108643 - T 74 -9 -2.98453 | opp_overlap 1108651, overlap 1108642 1108645 1108651 CACTAATATAATAAT TAGTCAAA TGG TTTGACTA TAACCATTATTACTG RP883 1109079 - 1108642 - | hypothetical protein hemH 1110145 - 1109105 - | ferrochelatase TERM 664 1109584 - 1109608 + gr 76 -2.9 -5.64321 | opp_overlap 1109585, overlap 1109577 1109585 CGTGAGCAGAAAATA ATATACGAAAA TTT TTATCGTATAG TTTTTCTTTTATTAT TERM 665 1109607 - 1109585 - GR 73 -6.4 -4.35042 | opp_overlap 1109585 1109584 1109577 GTGAGCAGAAAATAA TATACGAAAA TTT TTATCGTATA GTTTTTCTTTTATTA hemE 1111139 - 1110102 - | uroporphyrinogen decarboxylase TERM 666 1110442 - 1110461 + g 75 -5.8 -4.71222 | opp_overlap 1110442 1110445 GGAAAAGTAATTATA GGAGTTTT TACA AAAACTTC TTTTACTTTTAGTAT TERM 667 1110462 - 1110478 + g 85 -2.3 -6.11243 | overlap 1110465 TTTTACAAAAACTTC TTTTACT TTT AGTATAA TTTTTTTTGTTGGCT TERM 668 1110561 - 1110551 - G 70 -4 -4.90869 | opp_overlap 1110551 ACCATGAATCAAAAA TCTT TAA AAGA TCTACTCCAGATTTT