TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.669876 %AT, 936344 nt, 5230 terms. Intergenic: 0.691325 %AT, H2T: 221120 nt, 1669 terms; T2T: 63261 nt, 1007 terms; H2H: 58092 nt, 931 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|165932549|ref|NC_010263.1| Rickettsia rickettsii str. Iowa, complete genome (length 1268175) RrIowa_0001 1 - 822 + | hypothetical protein TERM 1 1006 - 959 - f 85 -7.7 -4.72846 | overlap 960 968 GTATAGATTGAAAAA CCTACTCAATGTCATCCCCGC CTACAC GCGGGGATGACATAAACGAGT CATGCAATAAGGCTG TERM 2 1005 - 960 - f 93 -11.2 -3.42985 | overlap 959 968 TATAGATTGAAAAAC CTACTCAATGTCATCCCCGC CTACAC GCGGGGATGACATAAACGAG TCATGCAATAAGGCT TERM 3 997 - 968 - f 100 -18 -3.14261 | overlap 960 959 GAAAAACCTACTCAA TGTCATCCCCGC CTACAC GCGGGGATGACA TAAACGAGTCATGCA RrIowa_0002 1082 - 1399 + | thioredoxin RrIowa_0003 1409 - 2158 + | O-antigen export system ATP-binding protein TERM 4 2188 - 2167 - g 78 -7.5 -4.17701 | TTCATAAATGATAAA GTATTTTTT TTCT AAAAAATAC TGGCGGGCAATAGCA TERM 5 2522 - 2535 + G 70 -2.4 -5.33124 | ATTTGCTCATTTTCG GCAA TGTATT TTGC TTTTATTTTATTATT RrIowa_0004 2159 - 2935 + | O-antigen export system permease protein TERM 6 3734 - 3699 - g 83 -11.3 -2.68775 | opp_overlap 3698, overlap 3695 3696 CGAGGAGCAAAGCGA CGTGGCAATCTCA GGAGATTTGA CGAGATTGCCACG CTCCTTGCAGTTGCT TERM 7 5800 - 5790 - g 73 -4 -5.12707 | GCAAAGTCTAAAAAA TGAA ATA TTCA GTGAAAATACAAAAA RrIowa_0005 2932 - 6033 + | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase RrIowa_0006 6319 - 6077 - | PEMK-like protein RrIowa_0007 7237 - 6443 - | UDP-N-acetylglucosamine acyltransferase RrIowa_0008 7681 - 7244 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 8 7555 - 7568 + g 74 -5.3 -4.76644 | CTGTAAATTGCGGTT CGTTA ACAG TAACG TTTTTAATACCTGTT TERM 9 7651 - 7631 - G 73 -4 -5.14163 | ATCTACTAATAAAAA TGGATAGC GATGA GGTATCCA ATCCATGATTTCGGT TERM 10 7754 - 7789 + r 76 -2.7 -5.53288 | opp_overlap 7753 7754 7768 7773, overlap 7755 AATTGACTAAGCAAT CTAGTAAAAAGTACT AAAATC AGCACTTTTTGCTAA TTTTTTTGGATTGCC RrIowa_0009 8914 - 7877 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase RrIowa_0010 9142 - 8966 - | hypothetical protein TERM 11 9569 - 9557 - H 70 -5.5 -4.25256 | TTTTGAGGAAAACAA GGGAT TTG ACCCC GATATTACTTTTAAA RrIowa_0011 9627 - 9986 + | hypothetical protein RrIowa_0012 10010 - 10195 + | hypothetical protein TERM 12 10383 - 10338 - f 100 -9.1 -4.62069 | GTTGCATGGGAAAAA CCCACTCGATGTCATTCCCGC TTTC GCAGAAATGACATAAAACGAG TCATGCGAGCAATAC RrIowa_0013 10961 - 11101 + | hypothetical protein TERM 13 11186 - 11198 + F 75 -4.9 -5.07652 | GTATACTCAAATGCT TTCAA GAA TTGAA TTTTATTTTGAGGGG RrIowa_0014 11213 - 11350 + | hypothetical protein RrIowa_0015 11646 - 11497 - | hypothetical protein RrIowa_0016 11968 - 11702 - | hypothetical protein RrIowa_0017 12321 - 12022 - | hypothetical protein TERM 14 13579 - 13560 - g 73 -3.6 -5.09204 | overlap 13561 ACAGGTGAAGAAAAA TCTGCT CCCTCTAT AGCAGA GCAGCTAGATATCGT RrIowa_0019 12789 - 13808 + | tRNA-dihydrouridine synthase TERM 15 13934 - 13923 - g 71 -3 -5.04908 | opp_overlap 13923 AAAATAAAAAAATAA GAAT TGCT ATTC GTTCTTATTTAAATA TERM 16 14192 - 14217 + G 77 -3.3 -5.40474 | overlap 14193 ACAATTGACATGTGT CCTTCTTCCAA AAGC TTTGAAGAAGA TTTTTTTAAAAAGCT RrIowa_0020 13826 - 14749 + | hypothetical protein RrIowa_0021 14835 - 14990 + | hypothetical protein RrIowa_0022 15525 - 14998 - | ATP/GTP hydrolase RrIowa_0023 16466 - 15513 - | periplasmic solute binding protein RrIowa_0024 17773 - 16463 - | poly(A) polymerase TERM 17 17132 - 17120 - G 74 -3.3 -5.28315 | AGAAAACCGAAAAAA GCGTA GAA TTCGC AAATAATCTTCTTTA RrIowa_0025 18487 - 18263 - | hypothetical protein comA 19309 - 18572 - | DNA translocation competence protein TERM 18 18734 - 18716 - G 77 -3.1 -5.56673 | overlap 18719 AGGCATAAGAAAAAA TGACGTT ATCGG AACGACA ATGAGGTTAGTTGGT TERM 19 19226 - 19214 - G 71 -3.4 -5.12971 | AAGATTTAATAAAAA CCTT GTAGT AAGG AAAATAATCATCACA RrIowa_0027 19467 - 19321 - | hypothetical protein RrIowa_0028 19665 - 19781 + | hypothetical protein TERM 20 21577 - 21564 - g 74 -2.3 -5.44198 | AAGAAACAAGAAAAA GCTGT AAAA ACGGC ATCAGATAAAGCTAA TERM 21 25301 - 25336 + G 71 -7.8 -3.63744 | opp_overlap 25301, overlap 25299 25304 AAAACATCGTAATCA TAGTTATAATGCGGAA GCAT TACTGCATTATAATTA TCTTTTGCAGGGCAA TERM 22 25304 - 25333 + G 73 -7.3 -3.95435 | opp_overlap 25301, overlap 25301 25299 ACATCGTAATCATAG TTATAATGCGGAA GCAT TACTGCATTATAA TTATCTTTTGCAGGG RrIowa_0029 20187 - 25787 + | hypothetical protein TERM 23 25870 - 25839 - f 73 -8.7 -3.18467 | opp_overlap 25836 25835 25836 AAACTTCTAACTTAA TGTCATGCCGTGG TCATAG CCACGGTATGACT AACTATATTGCTTAC RrIowa_0031 26069 - 26173 + | hypothetical protein TERM 24 27723 - 27711 - g 72 -4.9 -4.67692 | opp_overlap 27715, overlap 27715 27720 TTAAAAGCAAATAAA TTACT TAA AGTAA ATGATTACATTAATT RrIowa_0032 27105 - 27845 + | hypothetical protein RrIowa_0033 27944 - 28045 + | hypothetical protein RrIowa_0034 28186 - 28368 + | TPR repeat-containing protein RrIowa_0035 29194 - 28700 - | F0F1 ATP synthase subunit B RrIowa_0036 29667 - 29194 - | F0F1 ATP synthase subunit B' TERM 25 29235 - 29246 + g 71 -3 -5.11613 | AATTCATATCTGCTT TAGT GTCA ACTA TTTTTTCAATAATAT RrIowa_0037 29922 - 29686 - | F0F1 ATP synthase subunit C RrIowa_0038 30834 - 30106 - | F0F1 ATP synthase subunit A RrIowa_0039 31135 - 30839 - | hypothetical protein dsbA 32046 - 31213 - | thiol:disulfide interchange protein RrIowa_0041 32210 - 32731 + | carD-like transcriptional regulator RrIowa_0042 34582 - 32978 - | methyltransferase TERM 26 33427 - 33439 + g 74 -6.3 -4.29049 | opp_overlap 33427, overlap 33424 ATTGATATTTACCAA GCTTT TTA AAAGC TTCTTTTGCTACTTG TERM 27 33831 - 33851 + g 77 -3.3 -5.51165 | opp_overlap 33823 GCAGTAAGCGACGTA TCACCTAAG TAA TTTAGATGA TTTTTTTGAGCTTTT TERM 28 34836 - 34850 + G 89 -11.4 -3.42702 | overlap 34834 ACTCTTGATTTCATT CCCGCT TTT AGCGGG TGTTGTTACATGGTG RrIowa_0043 34705 - 34914 + | hypothetical protein TERM 29 34953 - 34963 + T 88 -4 -5.66684 | TTTCAAAAATTTGCT GTAT TTA ATAC TTTTTTTCTGGATTC recF 36093 - 35011 - | recombination protein F TERM 30 35584 - 35594 + g 73 -4 -5.06016 | ATCATCTCTTATATC TTCT ACT AGAA TTTTATTTCTCTCAT RrIowa_0045 36419 - 36117 - | hypothetical protein RrIowa_0046 36516 - 36403 - | hypothetical protein TERM 31 36507 - 36517 + g 71 -6.8 -4.14147 | GTTTCCATAGTTCCG GGTG ATT CACC TTGTTCTTCTTCTAT RrIowa_0047 37249 - 36755 - | dihydrofolate reductase RrIowa_0048 37338 - 37246 - | hypothetical protein TERM 32 38620 - 38638 + r 74 -7.6 -3.76952 | overlap 38634 TAGTAACTGTTACGT TTAGAAAA ATC TTTTCTAA TTTAGATTCGATAAA RrIowa_0051 39655 - 38996 - | hypothetical protein RrIowa_0052 40036 - 39737 - | hypothetical protein RrIowa_0053 40599 - 40204 - | hypothetical protein RrIowa_0054 40706 - 40891 + | hypothetical protein RrIowa_0056 41295 - 41023 - | hypothetical protein RrIowa_0055 41279 - 41455 + | hypothetical protein RrIowa_0057 41958 - 41671 - | hypothetical protein RrIowa_0058 42307 - 42131 - | hypothetical protein RrIowa_0059 42452 - 42297 - | hypothetical protein RrIowa_0060 42595 - 43191 + | cytochrome c oxidase Cu(A) center assembly protein algH 43771 - 43202 - | hypothetical protein RrIowa_0062 43837 - 44505 + | hypothetical protein TERM 33 44612 - 44563 - f 100 -15.1 -4.65895 | gap 1, overlap 44564 44567 GTGCGGATCGAAAAA CGCACT-CGGTGTCATCCCGTGGT TTG ACCACGGGACGACACCGGAAAACT GATCCACACGGGCAA TERM 34 44611 - 44564 - f 100 -18.6 -3.39216 | gap 1, overlap 44563 44567 TGCGGATCGAAAAAC GCACT-CGGTGTCATCCCGTGGT TTG ACCACGGGACGACACCGGAAAAC TGATCCACACGGGCA TERM 35 44606 - 44567 - f 100 -23.8 -2.85361 | gap 1, overlap 44564 44563 GGATCGAAAAACGCA CTCGGTGTCATCCCGTGGT TTG ACCACGGGACGACACCG-G AAAACTGATCCACAC TERM 36 45038 - 45015 - f 72 -7.6 -3.60696 | overlap 45016 45037 AAGATATAATCACAA CCATTATCTT CCAC AAGATAATGA CAATATTATTATCGC TERM 37 45037 - 45016 - f 71 -8.9 -2.75333 | overlap 45015 AGATATAATCACAAC CATTATCTT CCAC AAGATAATG ACAATATTATTATCG TERM 38 45393 - 45373 - g 72 -2.5 -5.30616 | GTATTTAAAGAAAAA GTTGATATG AAA CATCGCAAC GGCAGTGTAATAGAT RrIowa_0063 45067 - 45564 + | hypothetical protein RrIowa_0064 45569 - 45865 + | hypothetical protein RrIowa_0065 45968 - 46309 + | hypothetical protein TERM 39 46344 - 46371 + T 74 -9.2 -2.80113 | gap 1, opp_overlap 46339 GATACCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCATGAAATAATA RrIowa_0066 47865 - 46543 - | hypothetical protein TERM 40 47241 - 47226 - G 71 -9 -3.07487 | overlap 47225 TTATATCGGCAAAAT GCCCAA GCTC TTGGGC TGCGATAATCTGAAG RrIowa_0067 48377 - 48027 - | hypothetical protein RrIowa_0068 48698 - 48534 - | hypothetical protein RrIowa_0071 49381 - 49184 - | hypothetical protein RrIowa_0072 50264 - 49809 - | acetoacetyl-CoA reductase RrIowa_0073 50534 - 50373 - | acetoacetyl-CoA reductase TERM 41 50453 - 50463 + g 76 -4 -5.32944 | AATTAGCCACTATCG TAAG ACC CTTA TTTTTTAATTCTAAA RrIowa_0074 51004 - 50834 - | hypothetical protein TERM 42 52982 - 52971 - g 93 -4.4 -5.95946 | opp_overlap 52971 TTAATAATAAAAAAA TAGC AACA GCTA TTTTACAGTTTCGTA TERM 43 53025 - 53009 - g 70 -2.2 -5.22039 | overlap 53014 CGTAAAGGCAAAAAA GCAGAT ACCGA ATCGGC AGAAAATAGTTATGA TERM 44 53074 - 53093 + G 79 -10 -3.17212 | opp_overlap 53074 53070 CAGAGACGTAACAGA GCTTGCCG AAAG CGGTAAGC TTGATCCGATCATCG TERM 45 53925 - 53915 - g 70 -4 -4.95806 | AAAGCATTAGAAAAA TTAG AGT CTAA ATCCTATGATATGGG clpB 52562 - 55135 + | ClpB TERM 46 55301 - 55256 - T 100 -14.1 -5.07567 | overlap 55258 GTATAGCTCAAAAAA CGCGTTTGATGTCATTCCTGC GGAA GCGGGAATGACACAAAACGAG CAATGCAACAAGACC TERM 47 55299 - 55258 - T 100 -15.3 -2.77567 | overlap 55256 ATAGCTCAAAAAACG CGTTTGATGTCATTCCTGC GGAA GCGGGAATGACACAAAACG AGCAATGCAACAAGA RrIowa_0080 55857 - 55366 - | hypothetical protein TERM 48 55880 - 55908 + r 100 -14.1 -2.83715 | opp_overlap 55880 55882 55885, overlap 55882 55885 CCTCTTTTTTATATA CATAATTGCCATG TTT CATGGTAATTATG TATCATACTACTAAA TERM 49 55908 - 55880 - R 89 -11.9 -2.87132 | opp_overlap 55880 55882 55885, overlap 55882 55885 CCTCTTTTTTATATA CATAATTGCCATG TTT CATGGTAATTATG TATCATACTACTAAA TERM 50 55906 - 55882 - R 72 -8.7 -2.98823 | opp_overlap 55880 55882 55885, overlap 55880 55885 TCTTTTTTATATACA TAATTGCCATG TTT CATGGTAATTA TGTATCATACTACTA TERM 51 55882 - 55906 + r 83 -10.9 -2.96692 | opp_overlap 55882 55880 55885, overlap 55880 55885 TCTTTTTTATATACA TAATTGCCATG TTT CATGGTAATTA TGTATCATACTACTA TERM 52 55885 - 55903 + r 74 -8.2 -3.62616 | opp_overlap 55885 55882 55880, overlap 55882 55880 TTTTTATATACATAA TTGCCATG TTT CATGGTAA TTATGTATCATACTA RrIowa_0081 57018 - 55984 - | O-sialoglycoprotein endopeptidase TERM 53 57203 - 57231 + r 73 -9.1 -2.60219 | opp_overlap 57211, overlap 57206 57211 TATTTAAATAATGCC TAATTAGATACCT TTA AGGTATTTAATTG ATTATACAGCTTATA TERM 54 57206 - 57228 + r 76 -8.6 -3.4489 | opp_overlap 57211, overlap 57203 57211 TTAAATAATGCCTAA TTAGATACCT TTA AGGTATTTAA TTGATTATACAGCTT RrIowa_0082 58395 - 57202 - | acyl-CoA desaturase TERM 55 58630 - 58650 + r 72 -8.3 -3.28497 | opp_overlap 58622 58632, overlap 58641 ATATGAACATCTATA GAGACGTTC ATT GAAGGTCTC TTCACTTTCCCATAA phoB 58853 - 58674 - | phosphate regulon transcriptional regulatory protein RrIowa_0084 59305 - 59706 + | 30S ribosomal protein S6 TERM 56 59810 - 59786 - g 80 -7.3 -4.57755 | AGGTAGGAGATAAAA CTGCTAAAAAA GTA TTTTTTAGAAG ACGTAAAGGATGCCC RrIowa_0085 59731 - 60018 + | 30S ribosomal protein S18 RrIowa_0086 60030 - 60545 + | 50S ribosomal protein L9 TERM 57 60527 - 60546 + T 91 -4.4 -6.00086 | gap 1, opp_overlap 60527 TGAAACTTCAGAAGA TTTA-GCTG AGT CAGCATAAA TTTTTTTTATCATCT RrIowa_0087 60837 - 60688 - | hypothetical protein tilS 60847 - 62283 + | tRNA(Ile)-lysidine synthetase TERM 58 62302 - 62343 + F 76 -9.1 -3.17622 | opp_overlap 62299 62297 62312 62316, overlap 62300 62297 62303 62312 62316 CGGTATTTAAGAGGT TATCTGTAAATAAATTTTA ACTA TAAAATTTATTTACAGACC TCTCTTATACCAATA TERM 59 62303 - 62342 + F 100 -12.6 -2.50252 | opp_overlap 62299 62297 62312 62316, overlap 62302 62300 62297 62312 62316 GGTATTTAAGAGGTT ATCTGTAAATAAATTTTA ACTA TAAAATTTATTTACAGAC CTCTCTTATACCAAT ftsH 62383 - 64296 + | cell division protein RrIowa_0090 64380 - 64577 + | hypothetical protein TERM 60 64939 - 64894 - f 95 -11.9 -3.78775 | overlap 64895 GCGTGGACCAGTAAA TGCTCTTGATGTCATTCCCGC AGAA GCGGGAATGACATCAGTATCC ACGCTGGCAATACCT TERM 61 64938 - 64895 - f 100 -15.4 -2.87051 | overlap 64894 CGTGGACCAGTAAAT GCTCTTGATGTCATTCCCGC AGAA GCGGGAATGACATCAGTATC CACGCTGGCAATACC RrIowa_0091 65083 - 65868 + | succinate dehydrogenase iron-sulfur subunit RrIowa_0092 65958 - 66155 + | hypothetical protein RrIowa_0093 66152 - 66304 + | hypothetical protein RrIowa_0094 67649 - 66429 - | putative cytoplasmic protein RrIowa_0095 68407 - 67628 - | prolipoprotein diacylglyceryl transferase TERM 62 67738 - 67721 - G 70 -4.1 -4.68908 | opp_overlap 67721 GCTATCTAAAATAAA CCCGA TTTGTATG TCGGG TTCTCTAAATATTTC RrIowa_0096 68466 - 68648 + | hypothetical protein RrIowa_0097 68652 - 69815 + | mechanosensitive ion channel TERM 63 69869 - 69902 + F 93 -11.9 -3.19038 | overlap 69876 AATAAATTAAATTTG TATCCAAGATGGAAG TTGT CTTTCAGCTTGGATA TTCACTGCTTTTGAA TERM 64 69960 - 69976 + F 74 -8.1 -3.6106 | opp_overlap 69960 69959 TTATTTGCTCTAAAT GCTTTAA AAC TTAAAGC TTTAAAAATATTAAA TERM 65 70949 - 70932 - g 70 -7.1 -3.72152 | overlap 70902 CAATTAAAAGCAGAA TTTTTGC TGGA GCAAAAA AAGTAGACTTGCTTG yidC 70007 - 71689 + | putative inner membrane protein translocase component YidC RrIowa_0099 71693 - 72238 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RrIowa_0100 72252 - 72812 + | hypothetical protein RrIowa_0101 73400 - 72981 - | hypothetical protein RrIowa_0104 74731 - 74838 + | hypothetical protein RrIowa_0105 75579 - 74905 - | peptide deformylase TERM 66 75121 - 75139 + g 76 -7.4 -4.07568 | AATTTTCTTGAATCT TGCTACCG GTC CTGTAGCA TTTTCAACAGAAAAG TERM 67 75228 - 75252 + g 74 -2.1 -5.50499 | overlap 75230 AAATAGTTTTAGGCA TTGTATCCTTA AGG TCAGGATGCCA TTTTTTTAACTCTGC TERM 68 75868 - 75852 - g 74 -5.9 -4.47397 | AGAAAGATATGAAAA TAAGAAG TTT CTTCCTA TGGCGTTTATGATGT RrIowa_0106 75778 - 77274 + | ADP,ATP carrier protein TERM 69 77370 - 77411 + F 74 -7.7 -3.85698 | opp_overlap 77370 CTTTTTTCCTACAAA TTATAAGATTTTTGTGA AAAATGAA TGACAAAAATCTTATAA TTTGTAGCAAAAAAG TERM 70 77411 - 77370 - f 74 -7.7 -3.85698 | opp_overlap 77370 CTTTTTTCCTACAAA TTATAAGATTTTTGTGA AAAATGAA TGACAAAAATCTTATAA TTTGTAGCAAAAAAG TERM 71 78239 - 78259 + G 71 -5.5 -4.64048 | overlap 78241 78252 AATAAGCTAATATGG TATGTTTGT TTA GCAAACATG TTTGTTTATATAATA TERM 72 78509 - 78530 + G 71 -5.3 -4.49958 | overlap 78501 CTTCCTATTCACAGT GAATTATTA AGTA TAGTAATTC TTTCTTTAATAGGCT uhpC 77504 - 78799 + | regulatory protein RrIowa_0108 78824 - 79246 + | nucleoside diphosphate kinase RrIowa_0109 79250 - 81118 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA RrIowa_0110 81099 - 81677 + | glucose-inhibited division protein B parA 81674 - 82441 + | chromosome partitioning protein parB 82428 - 83288 + | chromosome partitioning protein RrIowa_0113 83522 - 85189 + | putative ABC transporter ATP-binding protein TERM 73 85401 - 85379 - g 83 -2 -5.81412 | opp_overlap 85383, overlap 85380 85383 TTTATTTAAAAAAAA TTATTAACCT AGA AGGTTATTAT CATGGTAGTTATGAT RrIowa_0114 85192 - 85509 + | hypothetical protein TERM 74 85678 - 85662 - g 70 -3.7 -4.85599 | TTTATGGCAGAAAAA CTTGTTA AAT TAACTAG CAAGCTTGAGATTCC RrIowa_0115 85545 - 86369 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 75 86517 - 86543 + F 76 -9 -3.44936 | opp_overlap 86516 86519 TCTTTGTTGTAAATT TACTATTTAGAA TTT TTTTAAATAGTA TTAATATTGATTTAT RrIowa_0116 86693 - 86884 + | hypothetical protein RrIowa_0117 87176 - 87400 + | hypothetical protein RrIowa_0118 87508 - 87609 + | hypothetical protein RrIowa_0119 87634 - 87747 + | hypothetical protein RrIowa_0120 87774 - 87914 + | hypothetical protein TERM 76 87939 - 87977 + T 100 -14.1 -3.41051 | gap 1, opp_overlap 87931 87972, overlap 87933 TTAAAAGTTTGACGT TGC-GATGTCATTGCTGC TGTT GCAGGAATGACATCGGCA TTCTAATAACAATGC RrIowa_0121 88344 - 88012 - | HesB protein family protein TERM 77 89511 - 89493 - g 70 -3.8 -4.90918 | overlap 89484 89497 ATAAAAGTAATAAAA TTACGGCC ATC AGCCTTAA ATGTACTAAAATCGT RrIowa_0122 88562 - 89716 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein RrIowa_0123 89830 - 91560 + | arginyl-tRNA synthetase RrIowa_0124 91702 - 91595 - | hypothetical protein RrIowa_0125 91733 - 92407 + | hypothetical protein RrIowa_0126 92575 - 94791 + | DNA topoisomerase IV subunit A RrIowa_0127 95095 - 94901 - | hypothetical protein TERM 78 95013 - 95047 + g 72 -9.5 -2.64155 | opp_overlap 95013, overlap 95019 TCTTTAAATAATAAT TTAGAAGCGGTTGCA TATCT TGTAACTGCTTTTAA TCCATTTACAAAGGA TERM 79 95019 - 95041 + g 74 -6.3 -4.33165 | opp_overlap 95013, overlap 95013 AATAATAATTTAGAA GCGGTTGCA TATCT TGTAACTGC TTTTAATCCATTTAC TERM 80 95140 - 95126 - R 76 -3.6 -5.4593 | overlap 95129 95131 95133 95138 TTAAAATAATAAAAA TCATAT ATC ACATGA TTACCATATATTGTG TERM 81 95187 - 95129 - R 71 -7.9 -3.46107 | gap 2, opp_overlap 95144 95149 95151, overlap 95126 95131 95133 95138 AAATAATAAAAATCA TATATCACATGATTACCATATATTGTGGT TGC ATCACAATATATGGTAATCA-GAGAAA-A TCAATATCTAAAAAT TERM 82 95186 - 95131 - R 100 -13 -3.26262 | gap 1, opp_overlap 95144 95149 95151, overlap 95126 95129 95133 95138 ATAATAAAAATCATA TATCACATGATTACCATATATTGTGGT TGC ATCACAATATATGGTAATCA-GAGAAA ATCAATATCTAAAAA TERM 83 95184 - 95133 - R 100 -15.6 -3.1709 | gap 1, opp_overlap 95144 95149 95151, overlap 95126 95131 95129 95138 AATAAAAATCATATA TCACATGATTACCATATATTGTGGT TGC ATCACAATATATGGTAATCA-GAGA AAATCAATATCTAAA TERM 84 95180 - 95138 - R 100 -19.6 -2.91086 | opp_overlap 95144 95149 95151, overlap 95126 95133 95131 95129 AAATCATATATCACA TGATTACCATATATTGTGGT TGC ATCACAATATATGGTAATCA GAGAAAATCAATATC TERM 85 95461 - 95417 - R 100 -8.2 -5.95166 | gap 1, opp_overlap 95425 95435 95436 TTCAATTAAAAAAAA TATAATAATCAAGGCATA-AG CTTA CTCTAAGCCTTGATTATAATA GTGATGGCAATTAAT RrIowa_0128 96803 - 95487 - | hypothetical protein TERM 86 95648 - 95658 + g 71 -3.2 -5.10064 | TAGCGAGGCTTACAG CATC AAC GGTG TTTTTATATCTTGAA RrIowa_0129 97082 - 97654 + | deoxycytidine triphosphate deaminase secB 97700 - 98158 + | preprotein translocase subunit SecB ctrA 98380 - 99093 + | cell cycle transcriptional regulator queF 99097 - 99918 + | 7-cyano-7-deazaguanine reductase TERM 87 100023 - 100050 + T 76 -3.6 -5.47218 | opp_overlap 100030, overlap 100024 100025 100030 GACCACGGAATCTAG CTTAAAATACTA TTAA TAGTATTTTAGA TTTTTTTGGATCCCG TERM 88 100024 - 100049 + T 74 -7.1 -3.87608 | opp_overlap 100030, overlap 100023 100025 100030 ACCACGGAATCTAGC TTAAAATACTA TTAA TAGTATTTTAG ATTTTTTTGGATCCC RrIowa_0133 100795 - 100235 - | putative cytoplasmic protein RrIowa_0134 102247 - 100850 - | NAD(P) transhydrogenase subunit beta TERM 89 102358 - 102327 - R 100 -5.9 -6.32976 | gap 1, overlap 102328 AAAAAAATAAAAAAA CTG-GATCCCGCGA TCAAG TCGCGGGATGACAA ATACGCTTCAAGAAC TERM 90 102357 - 102328 - R 77 -7.2 -4.3155 | gap 1, overlap 102327 AAAAAATAAAAAAAC TG-GATCCCGCGA TCAAG TCGCGGGATGACA AATACGCTTCAAGAA RrIowa_0135 103120 - 102386 - | hypothetical protein TERM 91 103560 - 103582 + G 71 -3.4 -5.16206 | overlap 103561 CTTACCATAGCTCCC GTTACTACTG CAA CAGTCGTAAG TTTTTCTATTCCTTT RrIowa_0136 103275 - 104159 + | drug/metabolite exporter family protein RrIowa_0137 104146 - 105402 + | major facilitator transporter RrIowa_0138 105399 - 105575 + | hypothetical protein TERM 92 105797 - 105780 - g 80 -2.7 -5.74086 | opp_overlap 105780 AAACCAAAGAAAAAA CACTAAA GATT TTAAGTG ATTATTTACAGCAAG RrIowa_0139 105683 - 105883 + | hypothetical protein secG 106237 - 106539 + | preprotein translocase subunit SecG RrIowa_0142 106733 - 106575 - | hypothetical protein TERM 93 107344 - 107364 + r 70 -6.1 -4.10953 | TTACTATACTTAGTA CTCCAGTAT TCT ATGCAGGAG TTTGGTTTAATAAGT TERM 94 107386 - 107430 + r 87 -8.1 -4.71186 | opp_overlap 107392 107395 107401, overlap 107387 107395 TTAATAAGTTTATTC ATTAAGCAAGGATAAGCTCTT AGG AAAAGCTTATCCTTATTTAAA TTTTCTATTGGTGAT TERM 95 107387 - 107429 + r 93 -11.6 -3.41627 | opp_overlap 107392 107395 107401, overlap 107386 107395 TAATAAGTTTATTCA TTAAGCAAGGATAAGCTCTT AGG AAAAGCTTATCCTTATTTAA ATTTTCTATTGGTGA TERM 96 107424 - 107392 - R 100 -13.7 -2.50935 | opp_overlap 107387 107386 107395, overlap 107395 107401 AGTTTATTCATTAAG CAAGGATAAGCTCTT AGG AAAAGCTTATCCTTA TTTAAATTTTCTATT TERM 97 107395 - 107421 + r 100 -11 -4.0921 | opp_overlap 107395 107392 107401, overlap 107387 107386 TTATTCATTAAGCAA GGATAAGCTCTT AGG AAAAGCTTATCC TTATTTAAATTTTCT TERM 98 107421 - 107395 - R 100 -13.2 -3.40867 | opp_overlap 107387 107386 107395, overlap 107392 107401 TTATTCATTAAGCAA GGATAAGCTCTT AGG AAAAGCTTATCC TTATTTAAATTTTCT RrIowa_0143 113067 - 107446 - | hypothetical protein TERM 99 110612 - 110653 + g 83 -11.2 -2.85657 | opp_overlap 110612, overlap 110609 110619 ATTTGACGTATAACA TTTGTAAGATCAGCTTGT CTTTTT ATAAGCTGATCTTGTAAA TCATTAGCTTTTGTA TERM 100 110619 - 110646 + g 79 -9.3 -3.39595 | opp_overlap 110612, overlap 110612 110609 GTATAACATTTGTAA GATCAGCTTGT CTTTTT ATAAGCTGATC TTGTAAATCATTAGC TERM 101 111332 - 111361 + g 82 -7.4 -4.46212 | overlap 111333 TAGGGTTGCATTCTG TTTTTTAACTCT AATTGC AGAGTTAAAAAG TTTTCTACTGAACGC TERM 102 111333 - 111360 + g 73 -8.7 -3.27406 | overlap 111332 AGGGTTGCATTCTGT TTTTTAACTCT AATTGC AGAGTTAAAAA GTTTTCTACTGAACG RrIowa_0144 113301 - 114680 + | cysteinyl-tRNA synthetase TERM 103 114707 - 114693 - f 71 -8.6 -2.76009 | opp_overlap 114693 114695, overlap 114692 114695 TAAAAGCTTGTAAAT TACGCA ATA TGCGTA TATAATTTATGGGCT TERM 104 114693 - 114707 + F 73 -8.6 -3.06265 | opp_overlap 114693 114692 114695, overlap 114695 TAAAAGCTTGTAAAT TACGCA ATA TGCGTA TATAATTTATGGGCT RrIowa_0145 114921 - 115808 + | 30S ribosomal protein S2 TERM 105 115865 - 115908 + F 82 -7.2 -4.83615 | gap 1, opp_overlap 115876, overlap 115869 CTTGATCCCGGGATC CAGCTTAAAAATACTAATATT ATT AATATTAGTA-TTTTAAATTG TTTTTATAGACCCTA TERM 106 115869 - 115905 + F 100 -11.3 -4.52873 | opp_overlap 115876, overlap 115865 ATCCCGGGATCCAGC TTAAAAATACTAATATT ATT AATATTAGTATTTTAAA TTGTTTTTATAGACC TERM 107 115898 - 115876 - f 100 -9.4 -4.62783 | opp_overlap 115869 115865 GATCCAGCTTAAAAA TACTAATATT ATT AATATTAGTA TTTTAAATTGTTTTT TERM 108 116244 - 116254 + G 80 -6.8 -4.71426 | opp_overlap 116244 116243 GTAATTGAAGTAAAT TCCG AAA CGGA TTTTGTTGCTAGAAA RrIowa_0146 116007 - 116936 + | elongation factor Ts TERM 109 117118 - 117098 - f 100 -14.1 -3.15663 | opp_overlap 117089, overlap 117114 AGTTATTTTTATGAA TACCGTGGT CAA ACCACGGTA TGACACCGAATACGT TERM 110 117234 - 117265 + G 73 -8.2 -3.60538 | opp_overlap 117234 117233 117228, overlap 117232 CAAAGCAAACAAAGG CGAATTTAGGATAA GTGC TTATTCTAAACTCG TATTTATAATACTTT RrIowa_0147 117118 - 117312 + | hypothetical protein RrIowa_0148 117410 - 117799 + | hypothetical protein RrIowa_0149 118005 - 118142 + | hypothetical protein TERM 111 118178 - 118188 + G 84 -6.8 -5.03314 | opp_overlap 118170 118178 GCAAACATGCCTAAA GCAG ATC CTGC TTTTTTAAAGATACA RrIowa_0150 118169 - 118297 + | hypothetical protein RrIowa_0151 119840 - 118446 - | 3-deoxy-D-manno-octulosonic-acid transferase RrIowa_0152 120493 - 119837 - | lipoprotein RrIowa_0153 121849 - 120644 - | aspartate aminotransferase TERM 112 121443 - 121432 - G 81 -5.8 -4.91712 | CGCAATTTACAAAAA CAGG TGTT CCTG TGCTAAGTGCAACCA RrIowa_0154 121905 - 122081 + | hypothetical protein relB.1 122364 - 122200 - | RelB TERM 113 123090 - 123077 - g 70 -2.4 -5.22289 | opp_overlap 123077 123072 TATGAAATACAAAAA CGTT TTCCGG AACG TTTTACTTTAACCGG RrIowa_0156 122501 - 123505 + | SAM-dependent methyltransferase RrIowa_0157 123510 - 124265 + | lipoprotein ttg2D 124285 - 124884 + | toluene transport system protein TERM 114 125647 - 125633 - g 83 -5.8 -5.05782 | overlap 125644 ATCGAGTTCAAAAAA TTAGTA ATT TACTAA ATATAGATTCAGCTT RrIowa_0159 125371 - 125721 + | ribose-phosphate pyrophosphokinase RrIowa_0160 125702 - 125869 + | ribose-phosphate pyrophosphokinase RrIowa_0161 125889 - 126065 + | hypothetical protein RrIowa_0162 126131 - 127198 + | alanine racemase TERM 115 127273 - 127252 - f 78 -3 -5.62552 | AAAAAAATTAAAAAA GACTGGAT ACCGCG ATCAAGTC GTGGGATGACATTAG RrIowa_0163 127355 - 128134 + | ABC transporter permease protein RrIowa_0164 128149 - 128289 + | hypothetical protein TERM 116 128649 - 128639 - g 93 -4.6 -6.08342 | opp_overlap 128642, overlap 128642 TAAGAAAGAAAAAAA CGAC CTT GCCG GTGCAAAGCTTAATG TERM 117 128754 - 128731 - g 73 -3.8 -5.17576 | opp_overlap 128734, overlap 128733 128734 GAGGAATGCAAAAAA GAGTAGCCCT TGCT AGGGCTATTT GTAGTACACCGTCGA TERM 118 128752 - 128733 - g 71 -6.4 -4.20888 | opp_overlap 128734, overlap 128731 128734 GGAATGCAAAAAAGA GTAGCCCT TGCT AGGGCTAT TTGTAGTACACCGTC TERM 119 128734 - 128751 + G 87 -9.9 -3.96327 | opp_overlap 128734 128733 128731 GAATGCAAAAAAGAG TAGCCCT TGCT AGGGCTA TTTGTAGTACACCGT TERM 120 128751 - 128734 - g 77 -9.9 -3.11448 | opp_overlap 128734, overlap 128733 128731 GAATGCAAAAAAGAG TAGCCCT TGCT AGGGCTA TTTGTAGTACACCGT RrIowa_0165 128286 - 129041 + | ABC transporter ATP-binding protein TERM 121 129146 - 129166 + G 80 -6.3 -4.77757 | opp_overlap 129146 129150 ATATAATAAAAATAG TAATTATTC TTG GAATAGTTA TTTTAATTTTTAGCC RrIowa_0166 129043 - 129291 + | hypothetical protein RrIowa_0167 129504 - 129409 - | hypothetical protein TERM 122 129630 - 129641 + r 72 -4.4 -5.08483 | GTGAATTAATATTTC TAGC TAAT GCTA TTTTATTTAATTTTA RrIowa_0168 130257 - 129847 - | hypothetical protein TERM 123 130176 - 130190 + g 76 -3.6 -5.22943 | TTACTACATTTTTTA CTAATT TTG GATTAG TTTTTTGAATTTCCT RrIowa_0169 130935 - 130705 - | hypothetical protein TERM 124 130806 - 130824 + g 73 -8.9 -3.21925 | AAAAACCAACTTTAT GCTGTTC CACAC GAACAGC TTCATAATCAACTAT RrIowa_0170 131108 - 130962 - | hypothetical protein RrIowa_0171 131242 - 131105 - | hypothetical protein RrIowa_0172 131717 - 132010 + | 50S ribosomal protein L28 RrIowa_0173 132007 - 132243 + | 50S ribosomal protein L31 yihA 132558 - 133235 + | GTPase EngB RrIowa_0176 133306 - 134106 + | acetylglutamate kinase virB3 134119 - 134406 + | channel protein TERM 125 134527 - 134502 - f 76 -9 -3.48593 | overlap 134504 CAGTCTGTGATACAA GATCCCGTGG TCGTAG CCACGGGATG ACAACAAAAAATCTG TERM 126 134525 - 134504 - f 93 -11.6 -3.31726 | overlap 134502 GTCTGTGATACAAGA TCCCGTGG TCGTAG CCACGGGA TGACAACAAAAAATC virB4.1 134622 - 137039 + | VirB4 ATPase TERM 127 137054 - 137074 + F 72 -8.2 -3.31726 | overlap 137052 AATGCCTGTCTTTCA TCCCACGG CTTGA CCGCGGGA TCTTGTCTCACAGAC TERM 128 137097 - 137127 + F 100 -9.7 -4.62069 | TCACAGACTGTATTC TGAGATCCCGTGG ACAAG CCACGGGATGACA TTTTTAAAATGCGAG TERM 129 137677 - 137663 - g 95 -2.8 -6.23545 | GGCAAATAAAAAAAA GGAATA TCA TGTTCC ATATAGTGGTAAGCC TERM 130 138831 - 138849 + G 73 -7.4 -3.77302 | ATGATCTCGTTCTTG CTACAACC TAT GGTGGTAG TTACTTTTATGATCA virB6.1 137157 - 140117 + | channel protein virB6.2 140104 - 142089 + | channel protein virB6.3 142096 - 144996 + | channel protein TERM 131 145077 - 145048 - f 86 -9.4 -3.96224 | overlap 145074 GAAATCATTTACAAA GCAATCTCAGGA GTTATT TCATGAGATTGC CGCGCAGCCATACAG TERM 132 146689 - 146703 + G 77 -8.6 -3.65351 | opp_overlap 146689 TAAGTTAGTTAAAAA TTCTGC AGT GCAGAA TTTAGCTAAAACTGC TERM 133 146703 - 146689 - g 93 -8.6 -4.68424 | opp_overlap 146689 TAAGTTAGTTAAAAA TTCTGC AGT GCAGAA TTTAGCTAAAACTGC TERM 134 146813 - 146823 + G 82 -5.4 -5.26875 | opp_overlap 146813 146811 CGTATATGCAAAATA GCTA TAG TAGC TTTTTTAATTAGAGA virB6.4 145160 - 147835 + | channel protein virB6.5 147988 - 151449 + | channel protein TERM 135 151773 - 151748 - f 70 -4.1 -4.92314 | AGGAATCCAGAAAAA TAACTTCAATA TTGA TACAGAAGTTA CATATTTGATAAAAT RrIowa_0189 154288 - 154416 + | hypothetical protein RrIowa_0190 154413 - 154511 + | hypothetical protein TERM 136 155107 - 155090 - g 85 -4.1 -5.75538 | GTTAAAAAATAAAAA CCTCATA TTCT TATGTGG ACGTTACGAAGGGAT RrIowa_0191 154764 - 155468 + | tRNA (guanine-N(1)-)-methyltransferase RrIowa_0192 155486 - 155902 + | 50S ribosomal protein L19 TERM 137 155970 - 155997 + T 74 -9.2 -2.80113 | gap 1, opp_overlap 155965 ATACTCAATACGTCA TTGCAA-GCAGCC GTA GGCTGCATGGCAA TCTCATGAAATAATA RrIowa_0193 156308 - 156072 - | hypothetical protein secF 156381 - 157307 + | preprotein translocase subunit SecF RrIowa_0195 157472 - 158737 + | NADH dehydrogenase I subunit F RrIowa_0196 158921 - 159721 + | signal peptidase I TERM 138 160279 - 160265 - g 70 -4.2 -4.83169 | ATCGTCTGATAAAAA GAGAAG GAG CCTCCC ATTCATCGACTTTTA RrIowa_0197 159721 - 160404 + | ribonuclease III era 160397 - 161416 + | GTP-binding protein Era ruvC 161534 - 162007 + | Holliday junction resolvase TERM 139 162608 - 162598 - g 82 -3.2 -5.60993 | CTCCCGACAAAAAAA CTGC TAT GCAA CAAAATATCACTAAT RrIowa_0200 162009 - 162701 + | rRNA methylase RrIowa_0201 162867 - 162682 - | nucleotidyltransferase RrIowa_0202 163240 - 162968 - | nucleotidyltransferase RrIowa_0203 164359 - 163313 - | hypothetical protein TERM 140 163853 - 163868 + g 73 -9 -3.16564 | overlap 163851 TTTTTGGAGTTCCAA GTTCGC TGCG GCGAAC TGTTCAGTTACGTTG apbC 165315 - 164356 - | iron-sulfur cluster assembly/repair protein TERM 141 165030 - 165045 + g 72 -4.8 -4.77757 | overlap 165039 AGATAATTTTTTTTA CATTTT CTAC AAAATG TTTTGGTTTTTGAAC TERM 142 165468 - 165458 - g 77 -3.2 -5.47399 | TCAATTTTAAAAAAA TCCC CAT GGAA AGATTTTGAGTCTGA hflK 165422 - 166462 + | protease activity modulator TERM 143 166464 - 166507 + F 78 -6.9 -4.61231 | gap 2, opp_overlap 166458 166462 166503, overlap 166458 166466 166467 CTATTAAACCATAGG GGTGC-T-ATGTCATTCCCGC AAAA GCGGGAATGACATCAAGCGTG TTTTTCACGCTATAC TERM 144 166466 - 166505 + F 100 -11.7 -3.91908 | gap 2, opp_overlap 166458 166462 166503, overlap 166458 166464 166467 ATTAAACCATAGGGG TGC-T-ATGTCATTCCCGC AAAA GCGGGAATGACATCAAGCG TGTTTTTCACGCTAT TERM 145 166467 - 166504 + F 100 -13 -2.94422 | gap 2, opp_overlap 166458 166462 166503, overlap 166458 166466 166464 TTAAACCATAGGGGT GC-T-ATGTCATTCCCGC AAAA GCGGGAATGACATCAAGC GTGTTTTTCACGCTA TERM 146 166721 - 166734 + G 73 -3.9 -5.14965 | TTAAAATCCCGTTTA TTCAA AATG TTGAA TTTTTTGATAAGCGT hflC 166555 - 167415 + | protease activity modulator degP.1 167450 - 168976 + | endopeptidase RrIowa_0208 169123 - 169866 + | hypothetical protein RrIowa_0209 170033 - 170407 + | succinate dehydrogenase cytochrome b556 subunit TERM 147 170606 - 170593 - g 74 -2.4 -5.46698 | opp_overlap 170601 TGTAAAAGCAAAAAA TAGC GGTTCT GCTA AAAGCGGTTCTCATC RrIowa_0210 170552 - 170929 + | succinate dehydrogenase membrane anchor subunit TERM 148 170964 - 170933 - f 83 -6.6 -5.06735 | gap 1, overlap 170934 TATAAAGGATAAAAA TTGTCATACCGCGGT TTG ACCGCGGTATC-CAG AAAACAATATTGTAT TERM 149 170963 - 170934 - f 83 -10.1 -3.62414 | gap 1, overlap 170933 ATAAAGGATAAAAAT TGTCATACCGCGGT TTG ACCGCGGTATC-CA GAAAACAATATTGTA TERM 150 170983 - 170969 - f 71 -5.8 -4.42386 | GCGGTATCCAGAAAA CAATAT TGT ATATTG AATTACTGGACCCCG TERM 151 172693 - 172678 - g 70 -4 -4.87892 | gap 1 CTGCAAGAAAAGAAA GCA-GAG GAG CTCATGC ACGTGAAGATTATCC RrIowa_0211 171063 - 172853 + | succinate dehydrogenase flavoprotein subunit RrIowa_0212 173000 - 173656 + | hypothetical protein TERM 152 173747 - 173776 + G 75 -8.7 -3.51235 | opp_overlap 173748 173752, overlap 173748 173752 TAGAAATGATTGAAA ATAAAGGGTGGAA GTAT TTTCACCCTTTAA TTATCGTATATATAA TERM 153 173775 - 173748 - g 93 -10 -4.26681 | opp_overlap 173747 173748 173752, overlap 173752 AGAAATGATTGAAAA TAAAGGGTGGAA GTAT TTTCACCCTTTA ATTATCGTATATATA TERM 154 173748 - 173775 + G 84 -12.2 -2.70259 | opp_overlap 173748 173752, overlap 173747 173752 AGAAATGATTGAAAA TAAAGGGTGGAA GTAT TTTCACCCTTTA ATTATCGTATATATA TERM 155 173771 - 173752 - g 80 -6.4 -4.6951 | opp_overlap 173752 173748 173747, overlap 173748 ATGATTGAAAATAAA GGGTGGAA GTAT TTTCACCC TTTAATTATCGTATA TERM 156 173752 - 173771 + G 82 -8.6 -4.03179 | opp_overlap 173748 173752, overlap 173748 173747 ATGATTGAAAATAAA GGGTGGAA GTAT TTTCACCC TTTAATTATCGTATA RrIowa_0213 173725 - 174204 + | 30S ribosomal protein S12 RrIowa_0214 174231 - 174713 + | 30S ribosomal protein S7 TERM 157 176501 - 176516 + G 77 -9 -3.53224 | opp_overlap 176501 176500 ACTTGCGTTTGAAAT TGCTGC AAAG GCAGCA TTTAGAGAAGGGATG RrIowa_0215 174726 - 176825 + | elongation factor G TERM 158 176932 - 176948 + F 74 -3.1 -5.45652 | opp_overlap 176927, overlap 176927 TAATAACAAATATTT TTAATAA CTT TTATTGA TTTTTTATTAAAAAT secE 177243 - 177443 + | preprotein translocase subunit SecE nusG 177459 - 178037 + | transcription antitermination protein NusG TERM 159 178175 - 178189 + F 75 -4.3 -5.3236 | opp_overlap 178175, overlap 178185 GAAATAATAAAAAAC TTCTG ATTTA CAGAA TTTTTTCTGCCTTGT RrIowa_0219 178307 - 178744 + | 50S ribosomal protein L11 RrIowa_0220 178750 - 179469 + | 50S ribosomal protein L1 RrIowa_0221 179580 - 180089 + | 50S ribosomal protein L10 RrIowa_0222 180233 - 180664 + | 50S ribosomal protein L7/L12 TERM 160 180935 - 180890 - f 85 -10.8 -3.06569 | opp_overlap 180890 TTAACTTCTTAAAAT CCAAAAAGCCTTATTCAA ATTTTAATTA CTAAATAAGGCTTTTTGG ATTTTAAGAAGTTAA TERM 161 180948 - 180970 + F 72 -2.9 -5.44119 | TGGATTTTAAGAAGT TAATTTAAA GCTAA TTTAAGTTA TTTTTTTGCAATAGG TERM 162 181317 - 181353 + F 76 -6.2 -4.57581 | gap 1, opp_overlap 181317 181320, overlap 181320 181344 TACTGCAAATTATAA GTATTTTATTGAAATAG GTAT CTATTCCAATAAAA-AC TTTATTGTTTAAAAT TERM 163 181353 - 181317 - f 74 -8.4 -3.60865 | gap 1, opp_overlap 181317 181320 181344, overlap 181320 TACTGCAAATTATAA GTATTTTATTGAAATAG GTAT CTATTCCAATAAAA-AC TTTATTGTTTAAAAT TERM 164 181351 - 181320 - f 87 -11.2 -2.92144 | opp_overlap 181320 181317 181344, overlap 181317 TGCAAATTATAAGTA TTTTATTGAAATAG GTAT CTATTCCAATAAAA ACTTTATTGTTTAAA TERM 165 181320 - 181351 + F 70 -9 -2.59355 | opp_overlap 181317 181320, overlap 181317 181344 TGCAAATTATAAGTA TTTTATTGAAATAG GTAT CTATTCCAATAAAA ACTTTATTGTTTAAA TERM 166 181934 - 181952 + G 73 -9 -3.24289 | overlap 181943 AAGTTATGCTGCTCC TCTTAAAG TTA CTTTAAGA TTAAGTATTTGGGAT TERM 167 185642 - 185663 + G 73 -7.3 -3.98159 | TGGTGAAAATAATTT TGAATCAGG CATT CCTGAATCA TTTAATGTTATGATA RrIowa_0223 181611 - 185732 + | DNA-directed RNA polymerase subunit beta TERM 168 185728 - 185712 - f 74 -9.5 -2.84878 | overlap 185711 TGTCTTAACGTAAAG CTTGAAG TAA CTTCAAG TTAAGAAAGACAGGT TERM 169 185805 - 185788 - f 85 -11.3 -2.78463 | ATCTGTTTTACTAGA TTCCCGC TTTT GCGGGAA TGACATGTAGGGTGC RrIowa_0224 185990 - 190108 + | DNA-directed RNA polymerase subunit beta' TERM 170 190447 - 190475 + T 100 -11.9 -4.34263 | opp_overlap 190447 TTATTGACAAAAAAA GCCTATAAAAACC CAA GTTTTTTATAGGC TTTATCTTATTGCCC TERM 171 190475 - 190447 - T 100 -11.9 -5.64274 | opp_overlap 190447 TTATTGACAAAAAAA GCCTATAAAAACC CAA GTTTTTTATAGGC TTTATCTTATTGCCC RrIowa_0225 191696 - 190509 - | hypothetical protein TERM 172 190651 - 190665 + g 70 -4.3 -4.72846 | TCATATTGGAAGTTT TCAAG TGTTT CTTGA TTTTTAGATATCTGA TERM 173 191838 - 191826 - H 72 -4.1 -5.10033 | TCAAGATAAATAAAA TGACC TAA AGTCA AAAATAATATAAGGA TERM 174 192393 - 192405 + G 73 -4.1 -5.00884 | overlap 192392 AATCAAAAAATTAAT TGCTG AAG CAGTA TTTTTTACAAGAGAT TERM 175 192737 - 192763 + G 70 -8 -3.21218 | ATATGGGAGGTTCTG CAGCAGTTGTGG GTA CCATAATTGCGG TTGCTGGTCAAAAAT RrIowa_0226 191860 - 193362 + | leucyl aminopeptidase TERM 176 193408 - 193435 + F 74 -9.2 -2.8092 | gap 1, overlap 193432 GATACCGAGTCGTCA TTGCGA-GCAGCC CTA GGCTGCGTGGCAA TCTCGTCAAATATTC TERM 177 193636 - 193651 + G 71 -7.6 -3.5399 | ATGAGAAAGGCGGAG CAGGTA AAAC TACCTG TTCTATGCATCTAAT RrIowa_0227 193581 - 194381 + | ATPases involved in chromosome partitioning RrIowa_0228 194464 - 194898 + | hypothetical protein TERM 178 196354 - 196376 + G 79 -10.6 -2.90496 | overlap 196351 AGCCATAATCCGTTT TCTATGCCGC AGG GCGGAATAGA TGCTTTAGAGCAAGC TERM 179 196747 - 196735 - g 76 -7.7 -4.02334 | overlap 196744 TATGTAGAGGATAAA GCTCT AAA AGAGC TAAGTATTATGCTCT RrIowa_0229 194950 - 196797 + | aspartyl-tRNA synthetase RrIowa_0230 199191 - 197077 - | hypothetical protein TERM 180 197429 - 197449 + g 77 -3.3 -5.55855 | opp_overlap 197432, overlap 197430 TTCTTTATACCCTTA ATATCTTGC TCG GTAAGATAA TTTTCTTTTTTTAGC TERM 181 198928 - 198952 + g 78 -2.2 -5.70522 | TATTTCTCTTAATTT CTTGTTTTTA TCTCC TGGAAACGAG TTTTTTATTATTGTT RrIowa_0231 199471 - 199256 - | hypothetical protein TERM 182 199459 - 199442 - G 73 -9.1 -2.91395 | overlap 199441 AGCCGTGCGACAAAG CCCCTGC TTTT GCAGGGA TATGACATCCAAGTC secY.1 200284 - 199574 - | stabilizing membrane protein TERM 183 199998 - 199986 - G 73 -9.1 -2.95388 | TATGCAAGCGACATA CCGGT TAA ACCGG CATAAACCCAAAATA RrIowa_0233 201215 - 200358 - | dihydrodipicolinate reductase TERM 184 200457 - 200446 - G 71 -3 -5.1244 | GCACCAATAGAAAAA GAAT TTTT ATTC AGAGCTTCGTGTTTT RrIowa_0234 201834 - 201355 - | FMN reductase RrIowa_0235 202544 - 201819 - | glutamine-binding protein TERM 185 202259 - 202245 - G 71 -5.7 -4.51699 | opp_overlap 202237 202235, overlap 202237 202235 ATAATTATCAGAAAA GCTGA TATAT TCAGC ACGCTCCGGTGTTAC RrIowa_0236 204253 - 202802 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 186 203117 - 203143 + g 83 -9.6 -3.71527 | overlap 203124 TAATTTTACCAGTTT TGCAAAGTTACT AGG GGTAATTTTGCA TTCATTTATTCCTAT RrIowa_0237 205737 - 204256 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 187 205564 - 205576 + g 80 -9.1 -3.65542 | overlap 205563 AGCATAATTTTGATC GGCTG CTT CAGCC TGTTTTAAAGCTAAG RrIowa_0238 206042 - 205740 - | aspartyl/glutamyl-tRNA amidotransferase subunit C RrIowa_0239 206519 - 206346 - | hypothetical protein TERM 188 206393 - 206408 + g 71 -3.3 -5.0917 | CTTGTAAAATTTCCT CTACT TCTTCT AGTAG TTTATTTTTTAATAA RrIowa_0240 206573 - 206788 + | hypothetical protein RrIowa_0241 207397 - 206837 - | ribosome recycling factor TERM 189 207535 - 207569 + r 100 -11.1 -4.11906 | opp_overlap 207534 207537 207545, overlap 207538 207545 TTTGACGAAGCAATC TAGTAAAAAATTCTG ATCTA CAGAATTTTTTATTA TTCTTTCTAGATTGT TERM 190 207538 - 207566 + r 95 -10.6 -4.16305 | opp_overlap 207537 207534 207545, overlap 207535 207545 GACGAAGCAATCTAG TAAAAAATTCTG ATCTA CAGAATTTTTTA TTATTCTTTCTAGAT TERM 191 207545 - 207559 + r 88 -4.3 -5.70522 | opp_overlap 207537 207534 207545, overlap 207538 207535 CAATCTAGTAAAAAA TTCTG ATCTA CAGAA TTTTTTATTATTCTT TERM 192 207559 - 207545 - R 75 -4.3 -5.18357 | opp_overlap 207545 207538 207535, overlap 207537 207534 CAATCTAGTAAAAAA TTCTG ATCTA CAGAA TTTTTTATTATTCTT RrIowa_0242 208438 - 207683 - | uridylate kinase TERM 193 207996 - 207986 - G 83 -8.2 -4.37092 | ATCGGTTGTACAAAA CGGG TTA CCCG TACCGCCGGCAAAAA shaE 208758 - 208435 - | putative monovalent cation/H+ antiporter subunit E RrIowa_0244 210301 - 208742 - | multidrug resistance protein B TERM 194 210260 - 210249 - G 85 -4.4 -5.59357 | opp_overlap 210249, overlap 210258 ACCATACCAAAAAAA GCAA ATAA TTGC TTTTTAGAAAGAGCA RrIowa_0245 210532 - 210735 + | hypothetical protein TERM 195 210882 - 210898 + G 71 -3 -5.07652 | opp_overlap 210874, overlap 210883 CAAAATATAATGGAA TTACCT AAAAA AGGTAG TTTTGTTTTACCCCA RrIowa_0246 210801 - 210920 + | hypothetical protein RrIowa_0247 211295 - 211110 - | hypothetical protein RrIowa_0248 211942 - 211352 - | hypothetical protein TERM 196 212598 - 212567 - R 74 -2.4 -5.5074 | opp_overlap 212575 212591, overlap 212560 212568 212575 CAATCCAATAAAAAA TTTAAAAATGCTAA AAGA CTAGCATCCTTAAT TGGACCCCGTGGTCA TERM 197 212590 - 212575 - R 70 -4 -4.95854 | opp_overlap 212575, overlap 212568 212567 TAAAAAATTTAAAAA TGCTAA AAGA CTAGCA TCCTTAATTGGACCC yaeT 214946 - 212640 - | outer membrane protein assembly factor TERM 198 215058 - 215038 - R 70 -8.3 -3.15458 | overlap 215036 AAATAATAAATTAGA TACCGCG TTCAAGT CGCGGTA TGACAAAGAACGGGA RrIowa_0251 216259 - 215186 - | M50 family membrane endopeptidase TERM 199 216079 - 216069 - G 72 -8.2 -3.51161 | overlap 216059 TAAATCTTGACATAA CCGC CAA GCGG TATAAGGCAAATCTT RrIowa_0252 216541 - 217011 + | transcription antitermination protein NusB RrIowa_0253 217145 - 217828 + | 23S rRNA Um2552 2'-O-methyltransferase RrIowa_0254 218940 - 217879 - | hypothetical protein TERM 200 218966 - 218978 + H 82 -6.3 -5.24531 | opp_overlap 218961, overlap 218961 TTTTGATCAATTTTA CCATA AAA TATGG TTTTTTCTAAAAAAT TERM 201 219000 - 219040 + H 74 -7.9 -3.77905 | opp_overlap 219012 219015, overlap 219005 CTAAAAAATGTCAAG TCAAATATTAAGCTATTAT TAA ATAAAAGATTGATATTTGA TTACTTTTGTCATAT RrIowa_0255 219105 - 220049 + | hypothetical protein TERM 202 220112 - 220065 - T 75 -5.8 -4.84539 | opp_overlap 220070 220074, overlap 220074 TAACTAAATACAAAA CTTTCTAAAGAGTAAGGTTATA GATC TATAACCTTACTCTTTATTTAT TTAATAACCTCTTTA TERM 203 220070 - 220107 + T 100 -18.9 -4.49958 | opp_overlap 220065 220074, overlap 220074 AAATACAAAACTTTC TAAAGAGTAAGGTTATA GATC TATAACCTTACTCTTTA TTTATTTAATAACCT TERM 204 220103 - 220074 - T 100 -15.3 -3.61219 | opp_overlap 220074 220070, overlap 220065 ACAAAACTTTCTAAA GAGTAAGGTTATA GATC TATAACCTTACTC TTTATTTATTTAATA TERM 205 220074 - 220103 + T 100 -15.3 -4.80736 | opp_overlap 220065 220074, overlap 220070 ACAAAACTTTCTAAA GAGTAAGGTTATA GATC TATAACCTTACTC TTTATTTATTTAATA RrIowa_0256 220549 - 220109 - | putative cytoplasmic protein RrIowa_0257 220743 - 220549 - | putative cytoplasmic protein TERM 206 221041 - 221028 - g 74 -5.3 -4.72846 | opp_overlap 221018, overlap 221018 CGATATAGGTAAAAA TAACC TATC GGTTA GACTGAAAGAACAGT RrIowa_0258 220807 - 221580 + | hypothetical protein TERM 207 221652 - 221625 - T 74 -9.2 -2.80113 | gap 1, overlap 221592 TATGATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGAAAAGGTAGA RrIowa_0259 221905 - 221669 - | hypothetical protein RrIowa_0260 225186 - 222160 - | acriflavin resistance plasma membrane protein TERM 208 223079 - 223105 + g 71 -6.6 -4.22041 | overlap 223080 223086 CGGTTGACTTCTATA CTTATAGTCGGC ATT GCCGATTGTAAA TTTCTATTGACGTTT TERM 209 223080 - 223104 + g 77 -10.1 -3.1214 | overlap 223079 223086 GGTTGACTTCTATAC TTATAGTCGGC ATT GCCGATTGTAA ATTTCTATTGACGTT TERM 210 223086 - 223098 + g 79 -9.1 -3.51721 | overlap 223080 223079 CTTCTATACTTATAG TCGGC ATT GCCGA TTGTAAATTTCTATT TERM 211 223609 - 223625 + g 70 -8.1 -3.29591 | opp_overlap 223606 AATGATGACAAATTT CTTTTGA TTT TCAAAAG TTAGCTTTAGATAGT TERM 212 225124 - 225106 - G 77 -5.2 -5.0133 | TAGTTTGGTAAAAAA CATTGCTC CAA GAGCTACG ATAACCAAATTCAAA RrIowa_0261 225575 - 225994 + | DNA-binding protein HU TERM 213 226099 - 226067 - f 70 -4.1 -4.95155 | GTGACACTAGAAAAA CCAGCTCATGCAA TAATGCT CTGCAAAAGCCGG AATGATATAGAATAC RrIowa_0262 226134 - 226943 + | DNA polymerase III subunit delta' RrIowa_0263 227154 - 228503 + | signal recognition particle, subunit FFH/SRP54 TERM 214 228598 - 228623 + G 73 -4.1 -4.91712 | ATTTTATCCAGTATG TAACTTCTGTA GCAA TATTGAAGTTA TTTTTCTGGATTCCC RrIowa_0264 228573 - 228713 + | hypothetical protein RrIowa_0265 229499 - 229203 - | prolyl endopeptidase family RrIowa_0266 229789 - 229523 - | hypothetical protein TERM 215 229982 - 230007 + r 76 -9.9 -2.69468 | gap 1, overlap 229973 229978 TTAAGCTAGCTTTAT CGCT-ATCTTCT TTT AGAAGATCAGCG TAGTGTATGGCAATA RrIowa_0267 230376 - 230215 - | hypothetical protein TERM 216 230454 - 230472 + r 75 -4.6 -5.02476 | TAATTTCCCGCTACT TGTTTTTG GCT CAAAACCA TTTTTTACAAAATCT RrIowa_0270 231060 - 230962 - | hypothetical protein TERM 217 231290 - 231322 + G 76 -3.6 -5.38054 | gap 1 AAATATGAGAGTTAT GGCTAATG-ATTTAA GTAT TTATATTCATTGGCC TTTTTGTTTGTCCAA TERM 218 231834 - 231819 - g 71 -5.4 -4.61824 | CAAGAAGAATTAAAA CAAGCT ATGC AGCTCG CTACCTCACATATTT RrIowa_0271 231237 - 232439 + | coproporphyrinogen III oxidase RrIowa_0272 232482 - 232631 + | hypothetical protein RrIowa_0273 232661 - 233002 + | hypothetical protein RrIowa_0274 233064 - 233195 + | hypothetical protein TERM 219 233329 - 233319 - T 70 -5.4 -4.65916 | GTCATTGCAAGAAAA TTGC ATA GCAA TTGACGAAGTAAGGA TERM 220 233369 - 233355 - T 82 -4.3 -5.50925 | opp_overlap 233352 233355 AAGGAAGAGAAAAAA TTCTG ATTTA CAGAA TTCTTTTATTATTTT TERM 221 233396 - 233417 + T 74 -8.1 -3.62522 | gap 1, overlap 233398 TTTTTTGGGGAGTGC CAT-GCAGTC TAC GACTGCGATG TTGTTAGCCCGATTA TERM 222 233398 - 233414 + T 70 -8.7 -2.63073 | overlap 233396 TTTTGGGGAGTGCCA TGCAGTC TAC GACTGCG ATGTTGTTAGCCCGA RrIowa_0275 233792 - 233610 - | hypothetical protein TERM 223 233792 - 233802 + r 76 -2.6 -5.53991 | CGTCATAGGGAGTCA TTAT ATT ATAA TTTTTTTGATCGATA RrIowa_0276 234305 - 234117 - | hypothetical protein RrIowa_0277 235555 - 234356 - | proton/sodium-glutamate symport protein TERM 224 234567 - 234543 - G 70 -7 -3.82031 | overlap 234545 234558 GGAAGCATTATCAAA GAGGCACCGG GAATA CCGGCACCAC CGATAGATCCAAGTG TERM 225 234565 - 234545 - G 72 -8.2 -3.4914 | overlap 234543 234558 AAGCATTATCAAAGA GGCACCGG GAATA CCGGCACC ACCGATAGATCCAAG TERM 226 235143 - 235133 - G 76 -4 -5.38348 | AAAAATAGCAAAAAA TACA ACT TGTA AGACATCACCGTTTG TERM 227 235219 - 235203 - G 78 -2.3 -5.65177 | ATATTTACAAAAAAA TCAATTA TAT TAAATGA AGTTCTGCTTGTCGT TERM 228 235345 - 235335 - G 76 -4.6 -5.1101 | opp_overlap 235331 GTAGTACCTAAAAAA GCGA CTA CCGC TTTCATTCCTACTCT cutA 235908 - 235594 - | periplasmic divalent cation tolerance protein RrIowa_0279 236396 - 235911 - | 6-pyruvoyl tetrahydropterin synthase TERM 229 236487 - 236460 - R 74 -9.2 -2.80113 | gap 1, opp_overlap 236455 236454, overlap 236427 TATGATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACAATTTTTTACA RrIowa_0280 237685 - 236498 - | dihydrolipoamide acetyltransferase RrIowa_0281 237852 - 237700 - | hypothetical protein TERM 230 237763 - 237749 - G 79 -10 -3.31144 | overlap 237759 TCGTCATTGCGAGAA GACGCT ATA AGCGTC GACGAAGCAATTTCA TERM 231 237797 - 237770 - G 73 -8.5 -3.15758 | opp_overlap 237766 237764, overlap 237759 237774 ATAAGCGTCGACGAA GCAATTTCAGG CAAATT CCTGAGATTGC CACGCTCTTTTAGTC RrIowa_0282 240635 - 237849 - | alpha-ketoglutarate decarboxylase RrIowa_0283 242261 - 240771 - | thermostable carboxypeptidase 1 TERM 232 241375 - 241393 + g 75 -9.6 -2.64155 | opp_overlap 241372, overlap 241372 241372 TCCATAAATAAAGCT TGGCTTTC ATG GAAGGCCA TACCTTTAGCAAGCC TERM 233 241933 - 241952 + g 77 -5.8 -4.7878 | overlap 241937 CAAACAAGTGCGGCT TTAGTAGT AGCT GCTACTAA TTTCTTTTGTAGCTG recN 243964 - 242327 - | DNA repair protein RrIowa_0285 244727 - 243972 - | ComL family lipoprotein TERM 234 244983 - 244998 + r 76 -2.6 -5.60993 | CTACCCAATGTCCTT TATCAT TTTT ATGGTA TTTTTTTCTACGGCC chaB 245185 - 245006 - | cation transport regulator dnaJ 246385 - 245264 - | chaperone protein dnaK 248397 - 246514 - | molecular chaperone DnaK degP.2 248459 - 249952 + | endopeptidase RrIowa_0290 250698 - 250901 + | hypothetical protein TERM 235 251094 - 251072 - T 74 -3.4 -5.4505 | TTCTTTAATAAAAAA CGGTAAGTAT GTA AAACTTAGCG ATTAAATTTAAAGCT RrIowa_0291 251458 - 251117 - | hypothetical protein RrIowa_0292 251626 - 252099 + | hypothetical protein RrIowa_0293 252107 - 253081 + | DNA polymerase III subunit delta RrIowa_0294 253217 - 253756 + | 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 236 254489 - 254501 + G 74 -6.3 -4.3587 | CTGCAGGGGTTATTT CAGTA GGT TACTG TTTATATTCTTGGTG RrIowa_0295 254230 - 255156 + | cytochrome c oxidase polypeptide III RrIowa_0296 255312 - 255671 + | hypothetical protein TERM 237 255727 - 255702 - T 100 -14.9 -3.16191 | opp_overlap 255702 TTATATCTTTAGTAA TACCCATAAGC TTCG GCTTATGGGTA TTTTTATTTTTAAGT TERM 238 255702 - 255727 + T 100 -14.9 -5.63236 | opp_overlap 255702 TTATATCTTTAGTAA TACCCATAAGC TTCG GCTTATGGGTA TTTTTATTTTTAAGT TERM 239 255829 - 255852 + T 81 -8.4 -4.30978 | opp_overlap 255825 255829 TTTAATAAAAATCAA CATATAAAAA CTTG TTTTTATATG TTTTCCTGGATTCCG TERM 240 255852 - 255829 - T 79 -8.4 -3.9407 | opp_overlap 255829, overlap 255825 TTTAATAAAAATCAA CATATAAAAA CTTG TTTTTATATG TTTTCCTGGATTCCG RrIowa_0297 256647 - 256015 - | hypothetical protein RrIowa_0298 256700 - 257548 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 241 257663 - 257686 + T 81 -8.4 -4.30978 | opp_overlap 257647 257663 GTTTAACAAAGTAAA CATATAAAAA TTTA TTTTTATATG TTTTACTGGATTCCG TERM 242 257686 - 257663 - T 81 -8.4 -4.21141 | opp_overlap 257663, overlap 257647 GTTTAACAAAGTAAA CATATAAAAA TTTA TTTTTATATG TTTTACTGGATTCCG RrIowa_0299 258227 - 257988 - | hypothetical protein RrIowa_0300 258849 - 258652 - | hypothetical protein RrIowa_0301 259247 - 258978 - | hypothetical protein RrIowa_0302 259423 - 259235 - | hypothetical protein RrIowa_0303 259616 - 259464 - | hypothetical protein TERM 243 259670 - 259684 + H 71 -8.6 -2.83641 | ACTGTCGCTTTCGCC GCTATC GCT GATAGC TCTAATAATAAATTC TERM 244 261139 - 261153 + H 73 -8.6 -3.08726 | overlap 261138 AATAAGAATTACGGA GGCATT ATT AATGCC ATATTTTTTCCGATC RrIowa_0307 262594 - 263025 + | hypothetical protein RrIowa_0308 263340 - 263609 + | hypothetical protein RrIowa_0309 263621 - 263890 + | hypothetical protein RrIowa_0310 264906 - 264604 - | hypothetical protein TERM 245 264909 - 264884 - G 79 -9.7 -3.17229 | overlap 264861 264882 ATTGCACCAGTAATA GTGGTAGCAGG TGGA CCTGCCACTAC ATACGAGGATAGGAG RrIowa_0311 265007 - 265099 + | hypothetical protein TERM 246 265855 - 265836 - f 100 -9.4 -4.59944 | AGTAGTACAAATAAA TCAGAATC TAAG GATTCTGA AGTTAGCCTTGAAAA RrIowa_0314 266515 - 266658 + | hypothetical protein TERM 247 267028 - 267042 + T 100 -4.3 -6.60239 | opp_overlap 267028 CAATCCAGTAAAAAA TGCTA ATTTA TAGCA TTTTTTTTTATTTTT TERM 248 267042 - 267028 - T 75 -4.3 -5.18357 | opp_overlap 267028 CAATCCAGTAAAAAA TGCTA ATTTA TAGCA TTTTTTTTTATTTTT RrIowa_0315 267594 - 267148 - | universal stress protein RrIowa_0316 268545 - 267604 - | immunogenic protein TERM 249 267847 - 267868 + g 70 -2.3 -5.28831 | overlap 267851 TAAGCCCTTATGAAG TATGGCTTT ATGA AAAGCTCTA TTTTGTTTTATTAAT RrIowa_0317 269620 - 268550 - | hypothetical protein TERM 250 269387 - 269414 + g 77 -8.6 -3.54779 | opp_overlap 269383, overlap 269383 269388 269390 TAGGACAATATTTTT GCATGTAAATTC TTTA GAATTTACATGA TTAATTAATTTTACT TERM 251 269388 - 269413 + g 84 -12.1 -2.71783 | opp_overlap 269383, overlap 269387 269383 269390 AGGACAATATTTTTG CATGTAAATTC TTTA GAATTTACATG ATTAATTAATTTTAC RrIowa_0318 269971 - 269633 - | ferredoxin, 2Fe-2s hscA 271822 - 270035 - | chaperone protein HscA TERM 252 270634 - 270615 - G 80 -9.4 -3.52896 | opp_overlap 270607 270603 TGATTATCGACATAA GTCGTAAA TTCT TTTACGAC CGAAATAGGAATCGG TERM 253 270876 - 270858 - G 75 -8.1 -3.72576 | TCGTCTTTTATTAAA GGAGTGC GGGTT GCACCCC CTACTAAAATAACTC hscB 272313 - 271813 - | co-chaperone HscB RrIowa_0321 272375 - 272956 + | ribonuclease HII TERM 254 272988 - 273015 + T 74 -9.2 -2.80113 | gap 1, opp_overlap 272985 GACACTGAATCATCA TTGCGA-GCAGCC ATA GGCTGCGTGGCAA TCTCATGAAATAATA RrIowa_0322 275095 - 273110 - | excinuclease ABC subunit B TERM 255 274475 - 274454 - G 80 -6.7 -4.68593 | gap 1, opp_overlap 274453 TTCATTACCGAAAAA CGATAAACGC CAA GC-TTTATCG CTGTAATGTGAGGGG RrIowa_0323 275166 - 275474 + | glutaredoxin RrIowa_0326 276446 - 277003 + | multidrug resistance ABC transporter ATP-binding and permease protein RrIowa_0327 277342 - 277407 + | multidrug resistance ABC transporter ATP-binding and permease protein TERM 256 277810 - 277787 - f 72 -8.3 -3.37056 | opp_overlap 277801 AGTAGCTATGTACAA GGTTTAAAG TGTAAG CTTTAAACC TAAAAGCTATTATAA TERM 257 277951 - 277939 - g 71 -3.5 -5.07486 | CATGTTCAATAAAAA TAATA AAT TATTA TCTAAAATATTACCG RrIowa_0328 277925 - 278032 + | hypothetical protein TERM 258 278312 - 278295 - f 80 -9.9 -3.25177 | overlap 278293 278291 GCTTAAAAAACTAGA TTCCTGC TTTC GCAGGAA TGACATCGGCATCCG RrIowa_0329 278463 - 281180 + | DNA gyrase subunit A TERM 259 281348 - 281305 - T 100 -12.5 -4.11216 | gap 1, opp_overlap 281305 281304, overlap 281306 281309 CGTGGATCGGTAAAA CCCACTGTGTCACCCCGTGG TCACG CCACGGGATGACAGAG-GTG AAATTGCTTCACGCA TERM 260 281349 - 281306 - T 100 -13.3 -3.06515 | gap 1, opp_overlap 281305 281304, overlap 281305 281309 GTGGATCGGTAAAAC CCAC-TGTGTCACCCCGTGG TCACG CCACGGGATGACAGAGGTGA AATTGCTTCACGCAA TERM 261 281345 - 281309 - T 100 -17.4 -2.75081 | opp_overlap 281305 281304, overlap 281305 281306 GATCGGTAAAACCCA CTGTGTCACCCCGTGG TCACG CCACGGGATGACAGAG GTGAAATTGCTTCAC RrIowa_0330 281890 - 281693 - | hypothetical protein RrIowa_0333 282935 - 283075 + | hypothetical protein RrIowa_0334 283197 - 283382 + | hypothetical protein RrIowa_0335 283615 - 283409 - | hypothetical protein RrIowa_0336 283833 - 284360 + | peptide deformylase TERM 262 284690 - 284718 + G 73 -9.5 -2.80074 | opp_overlap 284699 CCATCTGATTTGCCT CGTCACAGAGGAG CGG CTCCTCTGCAGCG TACTATTATAGAGGG RrIowa_0337 284357 - 285268 + | methionyl-tRNA formyltransferase RrIowa_0338 285485 - 285928 + | hypothetical protein TERM 263 286119 - 286106 - f 72 -2.5 -5.4593 | opp_overlap 286106 TGAAAATAAGAAAAA TAATT GTGA AATTA ATTCTGTATGCATTG TERM 264 286266 - 286254 - f 77 -7.7 -4.16016 | opp_overlap 286254 286253 GGAGTTGCGAATAAA CTTCG ATC CGAAG ATTTCCGAATAGGGA RrIowa_0341 289710 - 290276 + | hypothetical protein RrIowa_0342 291487 - 290435 - | ATPase TERM 265 290823 - 290844 + g 71 -3.1 -5.1361 | opp_overlap 290821 290833, overlap 290833 TGAGGAGCAAGATTA TTATCAC TAATATCC GTGATAA TTTTTTCAAGTTTGT TERM 266 291616 - 291644 + r 100 -9.1 -4.4831 | opp_overlap 291576 291623, overlap 291623 GACCACGGGATCCAG TGAAAAATGCTAA CCT TTAGCATTTTTTG TTATTTTTGCTAGAT TERM 267 291637 - 291623 - R 81 -7.2 -4.67353 | opp_overlap 291623 291616 GGATCCAGTGAAAAA TGCTAA CCT TTAGCA TTTTTTGTTATTTTT TERM 268 291623 - 291637 + r 95 -7.2 -5.80727 | opp_overlap 291623, overlap 291616 GGATCCAGTGAAAAA TGCTAA CCT TTAGCA TTTTTTGTTATTTTT RrIowa_0343 292799 - 291702 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 269 293253 - 293263 + G 76 -6.8 -4.59773 | opp_overlap 293253 293252 CCTTGACCACAACAG CGGT ATG ACCG TTTTTCACACTGCCC RrIowa_0344 292966 - 293394 + | hypothetical protein RrIowa_0345 293565 - 293804 + | hypothetical protein RrIowa_0346 293888 - 294022 + | hypothetical protein TERM 270 294063 - 294046 - T 78 -9.9 -3.05384 | GCTGGTTTTATGTAA TTCCTGC GAAA GCAGGAA TGACATAAAACCAGG RrIowa_0347 295859 - 294090 - | multidrug resistance ABC transporter ATP-binding and permease protein TERM 271 294478 - 294491 + g 72 -8.1 -3.50869 | ACATCATGAATATGT GCAGC TTTT GCTGC TTCTATAACCTCCTC TERM 272 294743 - 294758 + g 81 -7.6 -4.32177 | overlap 294756 CTACTTTTTGTTTAC TCGGTA TTAA TACCGA TTTATTATAAAATAG TERM 273 295845 - 295814 - G 76 -4.6 -5.05153 | ATTTTAAAAAATAAA TACTTAAGCTAAAT GTTG ATTTAGATAAAGTA GGGTATTTTATCACG RrIowa_0348 296039 - 296311 + | hypothetical protein TERM 274 297651 - 297640 - g 77 -5.8 -4.67556 | ATAATATTTTAAAAA CCGT GGAT ACGG TATCACCGGTACTCG RrIowa_0349 296463 - 297833 + | cyanide-insensitive cytochrome bd-type quinol oxidase subunit I TERM 275 297893 - 297904 + G 70 -4.4 -4.69487 | TTTGGGGTGGGCTTG TAGC TACC GCTA TTTGTTTCTATGTTT RrIowa_0350 297841 - 298860 + | cyanide-insensitive cytochrome bd-type quinol oxidase subunit II relB.2 298996 - 299304 + | RelB relE 299315 - 299575 + | hypothetical protein TERM 276 300016 - 300000 - g 93 -8.1 -5.55769 | TTGTATAATAAAAAA TTTGCAA GCT TTGCAAA TACCGTAAATAGTAC RrIowa_0353 299568 - 300416 + | beta 1,4 glucosyltransferase RrIowa_0354 300493 - 301731 + | M16 family peptidase RrIowa_0355 301885 - 302595 + | phosphoribosylaminoimidazole-succinocarboxamide synthase RrIowa_0356 302812 - 304398 + | hypothetical protein TERM 277 304442 - 304395 - f 71 -7.3 -3.71527 | AGATCAAGAAAGCAA GTAG-TCTAAGTGTCATTCCTGC TTTT GCAGGAATGAAA-TAAGAGCTAC GAGATAAAGTCTACA TERM 278 305365 - 305355 - g 76 -6.8 -4.62904 | opp_overlap 305346 AAAGATTCGTAAAAA CGGT TAT ACCG AAGTTAAGACTCCTG TERM 279 306283 - 306260 - g 76 -3.9 -5.26875 | TTTCTAATCAAAAAA TACCGATGA TTGCAG TAATCGGTA AACAAGAGCAAGAAA RrIowa_0357 304468 - 306402 + | threonyl-tRNA synthetase TERM 280 306568 - 306557 - g 89 -3 -5.8187 | TATCCAAGAAAAAAA TATC AAGA GATA AAATTATTTTTTACT RrIowa_0358 306490 - 306585 + | hypothetical protein RrIowa_0359 306619 - 306744 + | hypothetical protein RrIowa_0360 306859 - 307002 + | hypothetical protein RrIowa_0361 307088 - 307201 + | hypothetical protein RrIowa_0362 307276 - 307506 + | multidrug resistance ABC transporter ATP-binding and permease protein RrIowa_0363 307561 - 307725 + | multidrug resistance ABC transporter ATP-binding and permease protein RrIowa_0366 308540 - 308391 - | hypothetical protein TERM 281 308667 - 308636 - R 79 -6 -5.03314 | opp_overlap 308639, overlap 308615 308639 308665 TTTATTCCTAAAAAA TTACTATTTAGGAA TAAA TGCCTAAATAGTTA TATTAGTATATAAGT TERM 282 308664 - 308639 - R 71 -7.7 -3.38056 | opp_overlap 308639, overlap 308615 308636 ATTCCTAAAAAATTA CTATTTAGGAA TAAA TGCCTAAATAG TTATATTAGTATATA TERM 283 308639 - 308664 + r 74 -7.7 -3.75053 | opp_overlap 308615 308639 308636 ATTCCTAAAAAATTA CTATTTAGGAA TAAA TGCCTAAATAG TTATATTAGTATATA TERM 284 308738 - 308728 - R 70 -4 -4.87133 | opp_overlap 308728, overlap 308723 ATTCTTTAAAGAAAA GTAT AAA ATAC TACTTTTCAAAGAAA RrIowa_0367 309174 - 308758 - | hypothetical protein RrIowa_0368 309909 - 309811 - | hypothetical protein RrIowa_0369 310261 - 310103 - | hypothetical protein TERM 285 310276 - 310294 + H 76 -7.6 -3.90009 | opp_overlap 310275 310276, overlap 310270 AAGATTTGGTAAAAC CTTTTAAT TTT ATTAAAAG TCTTTGTTATTCTTT RrIowa_0370 310560 - 311921 + | type I secretion outer membrane protein RrIowa_0371 311923 - 312321 + | hypothetical protein RrIowa_0372 312330 - 312548 + | hypothetical protein RrIowa_0373 312538 - 314259 + | hypothetical protein TERM 286 315609 - 315597 - g 73 -4.1 -4.92791 | GAGAATATAATAAAA GATCA TTT TGACC ATTTTCTTAGTAGCG RrIowa_0374 314469 - 316457 + | DNA topoisomerase IV subunit B RrIowa_0375 316547 - 317935 + | carboxy-terminal processing protease precursor TERM 287 318069 - 318080 + F 70 -5.8 -4.30719 | GCTCCTTTTAGTCAC TCGC AATG GCGA TTTGTTATGCGAGCA TERM 288 318672 - 318682 + G 74 -5.4 -4.72497 | AGTGATTTAACAGTG GAAG AGG CTTC TTTTATTACTAGCTA TERM 289 319080 - 319064 - g 70 -2.4 -5.27769 | AGAAAAAAGTAAAAA TTATAT TAAAG ATATAA ATGATGCCGGTAAGC RrIowa_0376 318150 - 319643 + | sensory transduction protein kinase TERM 290 320356 - 320328 - g 95 -6.8 -5.95166 | opp_overlap 320328 GCGAACTAAAAAAAA CTCAGGAAGCAT GTAAT ATGCTTGCTAAG TTTGATAAGGAATTT ybgF 319709 - 320446 + | Tol system periplasmic component RrIowa_0378 320459 - 321121 + | hypothetical protein RrIowa_0379 321144 - 322388 + | PQQ repeat-containing protein RrIowa_0380 322482 - 322949 + | 50S ribosomal protein L13 RrIowa_0381 322956 - 323435 + | 30S ribosomal protein S9 TERM 291 323870 - 323900 + F 87 -8.4 -4.75404 | opp_overlap 323875 323878 ATGGGGGTGAGTTTA CTATAGTACTGTTA AGT TAACAGTTCCATAG TTTTTAATAAAATTT RrIowa_0383 324174 - 324374 + | D-alanyl-D-alanine dipeptidase RrIowa_0384 324711 - 324872 + | D-alanyl-D-alanine dipeptidase TERM 292 325074 - 325054 - g 72 -2.7 -5.24129 | opp_overlap 325043 CCTCTTTATAAAAAA TATAAATTT TCT AATTTTATA AAAGCTATGGAATTT RrIowa_0385 325024 - 325128 + | pterin-4-alpha-carbinolamine dehydratase TERM 293 325643 - 325633 - g 72 -2.6 -5.24531 | opp_overlap 325633 ATTGCTGATAAAAAA TATA TTT TATA TGGATTGGTTAGAGA RrIowa_0386 325399 - 325692 + | hypothetical protein RrIowa_0387 325699 - 325926 + | hypothetical protein RrIowa_0388 326574 - 326089 - | dinucleoside polyphosphate hydrolase RrIowa_0389 327951 - 326599 - | response regulator PleD RrIowa_0390 328027 - 328593 + | elongation factor P RrIowa_0391 328818 - 329567 + | myo-inositol-1(or 4)-monophosphatase RrIowa_0392 329639 - 329962 + | hypothetical protein RrIowa_0393 329996 - 330691 + | phosphatidylserine decarboxylase TERM 294 331502 - 331512 + G 71 -5.4 -4.56607 | ATTAATATATATTTG GCTA TTA TAGC TTTTCTACTTGCTAG RrIowa_0394 330953 - 331717 + | CDP-diacylglycerol--serine O-phosphatidyltransferase RrIowa_0395 331711 - 332778 + | multidrug resistance protein A RrIowa_0396 333122 - 333352 + | hypothetical protein RrIowa_0397 333375 - 333542 + | hypothetical protein RrIowa_0398 333895 - 333692 - | hypothetical protein bolA.1 334134 - 333892 - | BolA RrIowa_0400 334189 - 335409 + | sensory box/GGDEF family protein TERM 295 336272 - 336282 + G 74 -6.8 -4.27796 | overlap 336280 TTTATTACTAATTTG CCGT TTT ACGG TTTTGCCGTTTGTTG RrIowa_0401 335630 - 337087 + | UDP-N-acetylmuramate--L-alanine ligase RrIowa_0402 337308 - 338195 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 296 338259 - 338284 + F 100 -9.3 -4.81357 | opp_overlap 338259 GGGAATCCAGTAAAA CATATAAAAAA CAAG TTTTTTATATG TTTATTTTATAATAT TERM 297 338284 - 338259 - f 89 -9.3 -4.30978 | opp_overlap 338259 GGGAATCCAGTAAAA CATATAAAAAA CAAG TTTTTTATATG TTTATTTTATAATAT TERM 298 338301 - 338326 + F 80 -6.3 -4.87665 | opp_overlap 338304 TTATTTTATAATATG TAACTTCTATA TCAA TATTGAAGTTA TTTTTCTGGATCCCC TERM 299 338343 - 338368 + F 70 -5.3 -4.61231 | TTTTCTGGATCCCCG CCTACGCGGGG ATGA CATCGAGTAGG TTTTTCGAGCTATGC RrIowa_0403 338439 - 339404 + | D-alanine--D-alanine ligase ftsQ 339401 - 340204 + | cell division protein TERM 300 340517 - 340493 - g 100 -10.1 -5.13473 | opp_overlap 340492 340493 340493 ATCAGATTTAAAAAA TGCTGAAACTA GCA TTGTTTCAGCA ATTTACGCACTTGAA TERM 301 340493 - 340517 + G 75 -10.1 -2.74322 | opp_overlap 340493, overlap 340493 340492 ATCAGATTTAAAAAA TGCTGAAACTA GCA TTGTTTCAGCA ATTTACGCACTTGAA ftsA 340332 - 341567 + | cell division protein TERM 302 341639 - 341595 - T 72 -6.6 -4.13767 | gap 1, overlap 341596 341599 TGTTGGACTGGAAAA TGCATTTAGTGTCATTCCCGC TTCC GTGGGAATGACATAAAATG-A TCCACGCAACAATAC TERM 303 341639 - 341596 - T 70 -8.2 -3.08046 | overlap 341595 341599 GTTGGACTGGAAAAT GCATTTAGTGTCATTCCCGC TTCC GTGGGAATGACATAAAATGA TCCACGCAACAATAC TERM 304 341635 - 341599 - T 78 -10.4 -2.75577 | gap 1, overlap 341595 341596 GGACTGGAAAATGCA TTTAGTGTCATTCCCGC TTCC GTGGGAATGACA-TAAA ATGATCCACGCAACA RrIowa_0406 342185 - 341709 - | hypothetical protein TERM 305 342105 - 342093 - G 71 -6.3 -4.16033 | CCCAAAGAATAAGAA TCCAA TAC TTGGA ACTGTAAAGAATTCA RrIowa_0407 342696 - 342169 - | cytochrome c RrIowa_0408 342809 - 343879 + | hypothetical protein RrIowa_0409 344763 - 343888 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase RrIowa_0410 346269 - 345121 - | hypothetical protein RrIowa_0411 346696 - 348768 + | ribonuclease E TERM 306 348887 - 348871 - f 95 -6.7 -5.80727 | opp_overlap 348871 AAAAATAATAAAAAA TACTAAT AAT ATTAGTA TTTTTAGCTGGATCC TERM 307 348871 - 348887 + F 78 -6.7 -4.67353 | opp_overlap 348871 AAAAATAATAAAAAA TACTAAT AAT ATTAGTA TTTTTAGCTGGATCC TERM 308 349127 - 349137 + G 73 -8.2 -3.65832 | overlap 349126 349135 ATAGTTGAGTGGCGT CCGG TAA CCGG TATTTTGCCGCCTTT RrIowa_0412 349007 - 350020 + | heme O monooxygenase (ferredoxin) RrIowa_0413 350033 - 350944 + | hypothetical protein TERM 309 351657 - 351681 + F 85 -3.6 -5.67063 | opp_overlap 351659, overlap 351661 TATGATGATAGAAAA GGTGGCTAAA AAAGA TTTAGCTAAC TTTTTTTATGATGAA TERM 310 353048 - 353086 + G 71 -8.8 -3.03619 | opp_overlap 353052, overlap 353051 GTGACTTTTAATTTA CAGATGTCATCCCGTGGT CAA GCCACGGGATAACAATAG TCTTAAGGAGTAATT TERM 311 353051 - 353083 + G 83 -11.3 -2.74192 | opp_overlap 353052, overlap 353048 ACTTTTAATTTACAG ATGTCATCCCGTGGT CAA GCCACGGGATAACAA TAGTCTTAAGGAGTA TERM 312 353082 - 353052 - g 100 -16.3 -2.94912 | opp_overlap 353051 353048 CTTTTAATTTACAGA TGTCATCCCGTGG TCAAG CCACGGGATAACA ATAGTCTTAAGGAGT RrIowa_0417 352295 - 353080 + | exodeoxyribonuclease III RrIowa_0418 353103 - 354083 + | pyruvate dehydrogenase E1 component alpha subunit TERM 313 355009 - 354998 - g 77 -3 -5.49729 | opp_overlap 354998 AATCAGTGAAAAAAA CTAA TCGT TTAG TTGTAGTGGAAGAAG RrIowa_0419 354244 - 355224 + | pyruvate dehydrogenase subunit beta lepA.1 357191 - 355362 - | GTP-binding protein RrIowa_0421 357333 - 357572 + | hypothetical protein RrIowa_0422 357654 - 357872 + | hypothetical protein RrIowa_0423 357933 - 358076 + | hypothetical protein RrIowa_0424 358296 - 358850 + | hypothetical protein TERM 314 358931 - 358906 - f 70 -4.1 -4.91712 | GGTAATCCAGAAAAA TAACTTCAATA TTGA TACAGAAGTTA CATATTTGATAAAAT TERM 315 358950 - 358973 + F 81 -8.4 -4.30978 | opp_overlap 358950 ATTTGATAAAATAAA TCTATAAAAA CTAG TTTTTATAGA TTTTACTGGATTCCC TERM 316 358973 - 358950 - f 87 -8.4 -4.77775 | opp_overlap 358950 ATTTGATAAAATAAA TCTATAAAAA CTAG TTTTTATAGA TTTTACTGGATTCCC RrIowa_0425 359027 - 360478 + | isocitrate dehydrogenase TERM 317 360501 - 360551 + F 73 -5.6 -4.63172 | overlap 360508 360512 360549 ATTGCGAGTGAACTT TAGTTCGTGAGGCAATCTCAGG ACTTGTG CATGAGATTGCTTCGTCAATTA TTTTATAATTTCCTC shaG 360593 - 360913 + | putative monovalent cation/H+ antiporter subunit G TERM 318 361633 - 361609 - g 81 -10 -3.50869 | overlap 361611 CAGCAGGCGATACAA GATCCCGTGG TCAAG CCACGGGATG ACAAATCCAATAATA TERM 319 361631 - 361611 - g 91 -12.6 -3.32698 | overlap 361609 GCAGGCGATACAAGA TCCCGTGG TCAAG CCACGGGA TGACAAATCCAATAA shaA 360977 - 362050 + | putative monovalent cation/H+ antiporter subunit B RrIowa_0428 362043 - 362690 + | heme exporter protein B RrIowa_0429 362765 - 363220 + | hypothetical protein RrIowa_0430 363242 - 363775 + | ubiquinol-cytochrome c reductase iron-sulfur subunit TERM 320 364970 - 364952 - g 73 -4.4 -4.93696 | opp_overlap 364951 GGTAAATATGAAAAA CCTCTGCC ATT GCCGGAGG AGTTGTAAGAGTTAA RrIowa_0431 363782 - 364978 + | cytochrome b RrIowa_0432 365355 - 365218 - | hypothetical protein RrIowa_0433 365455 - 366210 + | cytochrome c1 RrIowa_0436 367001 - 367504 + | small heat shock protein TERM 321 367513 - 367527 + T 79 -7.2 -4.38116 | opp_overlap 367512 367513 TGATTAATCAAACAT TGCTAA ATA TTAGCA TTTAATTTTTCTGAA RrIowa_0437 367957 - 367754 - | hypothetical protein RrIowa_0438 368150 - 367998 - | hypothetical protein TERM 322 368343 - 368324 - R 82 -7.8 -4.50358 | opp_overlap 368323 ATTGAAATATGAAAA GGTCATGC CAAA GCTTGACC ATGGTATCAAGATAA RrIowa_0439 368657 - 368370 - | putative cytoplasmic protein TERM 323 368615 - 368632 + g 77 -5.5 -4.88407 | GTGTACCGGCATATT CCGGC TTAAACTT GCCGG TTTTTAATTCAATAA TERM 324 369076 - 369098 + r 95 -10.7 -3.89734 | ATGACTCCATGCGAT TTCTCCAAC AGGCG GTTGGAGAA TTTGGTCATTATTAT RrIowa_0442 370257 - 369400 - | peptide chain release factor 2 TERM 325 372384 - 372394 + G 71 -6.8 -4.19371 | overlap 372390 GTAATATCGAAATTC CGCA ATC TGCG TTTATTGCAGCTTTA lepA.2 370625 - 372427 + | GTP-binding protein LepA TERM 326 372512 - 372486 - T 70 -8.8 -2.58427 | opp_overlap 372486 372489, overlap 372485 372489 AAGATTTGTTATAAG GAAGTATCTGAA TCT TCCAGATGCTTC TAATGTTCCTCGGTA TERM 327 372486 - 372512 + T 71 -8.8 -2.77999 | opp_overlap 372485 372486 372489, overlap 372489 AAGATTTGTTATAAG GAAGTATCTGAA TCT TCCAGATGCTTC TAATGTTCCTCGGTA RrIowa_0445 373046 - 372948 - | hypothetical protein RrIowa_0446 373689 - 373528 - | outer membrane protein A TERM 328 375368 - 375355 - H 72 -2.5 -5.49809 | overlap 375363 GAAAGTTTAAAAAAA TAATA CAGT TATTA AATAAAAAGGTATTA RrIowa_0450 375941 - 376471 + | hypothetical protein TERM 329 377029 - 377009 - f 77 -7.7 -4.17523 | overlap 377000 AAATAAGGTTGAAAA CCAGTAATT TTA AATTACTAG ATGCTGGGGCAAATA TERM 330 377812 - 377800 - f 70 -6.3 -4.09554 | ACTAATAAAACATAA TGAAG TTG CTTCA ATACCAAAAGGTTAA RrIowa_0453 377912 - 378409 + | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase RrIowa_0454 379055 - 378636 - | proline/betaine transporter rodA 380602 - 379502 - | rod shape-determining protein RrIowa_0456 382938 - 380758 - | protease II TERM 331 381476 - 381492 + g 70 -2.3 -5.24129 | AAAGGATTTGAACCG TCTTTTT TAA ATAAAGA TTTTTTATAAAACAA TERM 332 381980 - 381998 + g 88 -7.6 -5.18371 | opp_overlap 381982 AAATAATCGCCATTA TATTCTAT TTC ATAGAATA TTTTGTTTTCTGCAG TERM 333 382303 - 382321 + g 78 -7.4 -4.11484 | opp_overlap 382317, overlap 382304 TACAGCTAAATCTCG ATCGCTTG ATA CAAGCGAA TTTTGCGGCATTCGC TERM 334 382304 - 382320 + g 83 -10.9 -3.06569 | opp_overlap 382317, overlap 382303 ACAGCTAAATCTCGA TCGCTTG ATA CAAGCGA ATTTTGCGGCATTCG TERM 335 383041 - 383028 - R 79 -5.3 -5.25799 | opp_overlap 383028 383032, overlap 383020 AAAATAATACAAAAA TTCTG TAAT CAGAA TTGTTTACTAGATTG RrIowa_0457 384662 - 383124 - | putative monovalent cation/H+ antiporter subunit D RrIowa_0458 385068 - 384664 - | virulence-associated protein C RrIowa_0459 385358 - 385059 - | hypothetical protein shaA 386996 - 385533 - | putative monovalent cation/H+ antiporter subunit D TERM 336 386334 - 386312 - G 71 -5.6 -4.63184 | AATGCACCGGAAAAA TTGCAGTTTT AGC AATACCGCAA ATAAACATTAACAAT shaD 388444 - 387143 - | putative monovalent cation/H+ antiporter subunit D TERM 337 387461 - 387487 + g 81 -9.6 -3.40597 | overlap 387459 TATTATACCGTTTTC GGTTACGTAT AATAAAA ATACGTAACC TATTTGAGTGCAACA TERM 338 387772 - 387756 - G 73 -3.7 -5.1287 | TGCATAGGGAAAAAA GCTGTTT TTA AAATAGC ACCTATTAAGAAAAA shaC 388776 - 388441 - | putative monovalent cation/H+ antiporter subunit C virB9.1 389607 - 388855 - | channel protein virB8.1 390307 - 389609 - | channel protein virB7 390772 - 390951 + | channel protein virB8.2 391001 - 391732 + | channel protein virB9.2 391719 - 392192 + | channel protein virB10 392375 - 393823 + | channel protein virB11 393820 - 394824 + | virB11 ATPase virD4 394958 - 396733 + | protein virD4 RrIowa_0471 396726 - 398147 + | exopolyphosphatase RrIowa_0472 398341 - 398144 - | hypothetical protein TERM 339 398222 - 398252 + g 73 -7.2 -3.91066 | AGCAGGGATACAGGT TAAAAAAATCTT GATTGCA AAGATTTTTTTA TTATATTGTTTCACT RrIowa_0473 398672 - 398361 - | hypothetical protein RrIowa_0474 399133 - 398987 - | hypothetical protein RrIowa_0475 399847 - 399608 - | hypothetical protein RrIowa_0476 400158 - 400442 + | hypothetical protein RrIowa_0477 400843 - 400550 - | phage host specificity protein TERM 340 400669 - 400679 + g 70 -4 -4.90906 | opp_overlap 400669, overlap 400662 TTACATATTTAAAAC TTTC TTT GAAA TTTTTAATATTGTCA TERM 341 401044 - 401034 - H 70 -5.4 -4.64591 | opp_overlap 401034 GAATTACATAGAAAA TCAC AGG GTGA TATGCTGCCTTTAAA RrIowa_0478 401076 - 401960 + | hypothetical protein RrIowa_0479 401944 - 402768 + | hypothetical protein RrIowa_0480 402771 - 403547 + | 3'(2'),5'-bisphosphate nucleotidase RrIowa_0481 403645 - 403544 - | hypothetical protein mutS 406359 - 403687 - | DNA mismatch repair protein TERM 342 403781 - 403793 + g 70 -4.1 -4.72029 | TTTTTATCTAATTTG CTGCT TAT AGTAG TTTTATTAGGTTCAA TERM 343 405264 - 405278 + g 91 -2.9 -5.9663 | TATCACTAGTTTTTT TTAGA AGTTC TCTAA TTTTTTTTACTATTT TERM 344 405639 - 405662 + g 84 -4 -5.59564 | opp_overlap 405660 405661 TTCCTTTAATATCTT TCATTTTATA AAAA TCTAAAATGA TTTTTTTGCATTTAT TERM 345 405706 - 405692 - G 93 -7.2 -5.47399 | overlap 405660 TTAATCGCAAAAAAA CTATCA ACT TGATAG GTAATACGAAAATTT RrIowa_0483 406964 - 406530 - | ribose-5-phosphate isomerase B RrIowa_0484 407016 - 407690 + | peptidoglycan-specific endopeptidase, M23 family RrIowa_0485 407691 - 408383 + | zinc metalloprotease TERM 346 408421 - 408384 - f 100 -17.3 -3.30243 | opp_overlap 408379, overlap 408385 AGTTATTTGCCATAA CTTTATGTCATTCCCGC TTTC GCAGGAATGACATAAAA CGAGCCATGCAACAA TERM 347 408420 - 408385 - f 100 -18.6 -2.57931 | opp_overlap 408379, overlap 408384 GTTATTTGCCATAAC TTTATGTCATTCCCGC TTTC GCAGGAATGACATAAA ACGAGCCATGCAACA thyX 408492 - 409376 + | FAD-dependent thymidylate synthase TERM 348 409423 - 409366 - f 100 -15.1 -3.18434 | overlap 409367 409381 AAGAACTGATGAAGA TTTTTGGGTAATGTATGTCATTCCTGC GAAA GCAGGAATGACATACAACAACCATAAC GGAATTTGATAAAAA TERM 349 409422 - 409367 - f 100 -18.6 -2.50338 | overlap 409366 409381 AGAACTGATGAAGAT TTTTGGGTAATGTATGTCATTCCTGC GAAA GCAGGAATGACATACAACAACCATAA CGGAATTTGATAAAA TERM 350 409408 - 409381 - f 100 -17.2 -2.52464 | overlap 409367 409366 TTTTTGGGTAATGTA TGTCATTCCTGC GAAA GCAGGAATGACA TACAACAACCATAAC TERM 351 410699 - 410689 - g 73 -4 -5.14965 | AGCTCCAGGAAAAAA CAAA ATT TTTG CAATTGATCTAACAG tolB 409451 - 410785 + | translocation protein TolB RrIowa_0488 411805 - 410924 - | RNA polymerase factor sigma-32 ctaG 411907 - 412473 + | cytochrome C oxidase assembly protein RrIowa_0490 413551 - 412571 - | hypothetical protein TERM 352 413698 - 413671 - H 74 -9.2 -2.80113 | gap 1, overlap 413638 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TTGCAA TGACGAAATCGATAA RrIowa_0491 413798 - 414910 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 353 416121 - 416131 + G 74 -5.4 -4.77165 | CTTCTTTAGCCGCTA TCCT TGG AGGA TTTTGTTCTACGGAA RrIowa_0492 414992 - 416437 + | amino acid permease TERM 354 416472 - 416528 + F 100 -24.1 -3.727 | opp_overlap 416472 GCGAGGAGAGGCAAA GCTTGACGTGGCAATCTCAGGAATT TTGTACT ACTTCATGAGATTGCCACGTCAAGC TTTGCCTCTCCTCGC TERM 355 416528 - 416472 - f 100 -24.1 -3.727 | opp_overlap 416472 GCGAGGAGAGGCAAA GCTTGACGTGGCAATCTCAGGAATT TTGTACT ACTTCATGAGATTGCCACGTCAAGC TTTGCCTCTCCTCGC RrIowa_0493 416591 - 417835 + | histidyl-tRNA synthetase TERM 356 418053 - 418039 - f 75 -4.3 -5.18357 | opp_overlap 418039 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTTATTATTG TERM 357 418039 - 418053 + F 93 -4.3 -6.22691 | opp_overlap 418039 CAATCCAGTAAAAAA TTCTG ATTTA CAGAA TTTTTTTTATTATTG RrIowa_0494 418197 - 418514 + | ABC transporter ATP-binding protein RrIowa_0495 418687 - 418896 + | ABC transporter ATP-binding protein TERM 358 419062 - 419089 + G 73 -9.2 -2.80443 | gap 1, opp_overlap 419054, overlap 419082 419086 GATACCACCACGTCA TTGCAA-GCAGCC ATA GGCTGCGTAGCAA TCTCGTCAAATATCC RrIowa_0496 418998 - 419228 + | hypothetical protein RrIowa_0497 419472 - 419317 - | putative cytoplasmic protein RrIowa_0500 421210 - 420941 - | hypothetical protein RrIowa_0501 421749 - 421522 - | hypothetical protein RrIowa_0502 421974 - 421792 - | hypothetical protein RrIowa_0503 422355 - 422137 - | hypothetical protein TERM 359 422457 - 422444 - H 72 -5.3 -4.80882 | ATTTTATATGAAAAA TTGAC ATGA GTCAA GAGATATTAAATTAA TERM 360 422516 - 422552 + H 100 -10.5 -4.44245 | opp_overlap 422526, overlap 422526 TTTATTCACAGAATC CAGTTAAAAATACTAAT AAT ATTAGTATTTTTGGTTG TTTTCTGGATACTGT TERM 361 422526 - 422542 + H 83 -6.7 -5.07971 | opp_overlap 422526, overlap 422516 GAATCCAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTGGTTGTTTTC TERM 362 422542 - 422526 - H 78 -6.7 -4.68424 | opp_overlap 422516 422526 GAATCCAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTGGTTGTTTTC tolQ 422709 - 423434 + | hypothetical protein tolR 423434 - 423865 + | hypothetical protein tolA 423855 - 424826 + | hypothetical protein RrIowa_0507 425221 - 425024 - | hypothetical protein RrIowa_0508 425407 - 425243 - | hypothetical protein RrIowa_0509 425617 - 425483 - | hypothetical protein TERM 363 425658 - 425631 - R 70 -4.4 -5.00027 | ATTAAAAATAGAAAA TTTATTAAATAT AGAG ATTTTTAATAAA TAATAATTGGATTTT RrIowa_0510 427719 - 426403 - | proline/betaine transporter RrIowa_0511 429393 - 427858 - | type I secretion adaptor protein TERM 364 428700 - 428712 + g 73 -4.1 -4.93318 | GTTGAGCAATATTTT GATGT AAT GCATC TTTTTCTGAGTTATA RrIowa_0512 431331 - 429577 - | type I protein secretion ATP-binding protein RrIowa_0513 432356 - 431340 - | aspartate-semialdehyde dehydrogenase TERM 365 431701 - 431717 + g 77 -9.5 -3.26449 | opp_overlap 431704, overlap 431696 431704 ATTTTGTTTAGTTCA GAAGCAA TTT TTGCTTC TTCACTTGTATAGCC RrIowa_0514 432711 - 432349 - | hypothetical protein TERM 366 432795 - 432825 + r 85 -3.5 -5.66684 | gap 1, opp_overlap 432799 432803, overlap 432799 432803 TGACTAAGCAATCCA GTAA-GAAATGCTA ATTT TAGCATTTCTTTAA TTTTTTTCTGGATTG TERM 367 432799 - 432820 + r 100 -10.3 -4.55485 | opp_overlap 432799 432803, overlap 432795 432803 TAAGCAATCCAGTAA GAAATGCTA ATTT TAGCATTTC TTTAATTTTTTTCTG TERM 368 432820 - 432799 - R 83 -10.3 -3.23598 | opp_overlap 432795 432799 432803, overlap 432803 TAAGCAATCCAGTAA GAAATGCTA ATTT TAGCATTTC TTTAATTTTTTTCTG TERM 369 432803 - 432816 + r 72 -5.3 -4.73341 | opp_overlap 432803 432799, overlap 432799 432795 CAATCCAGTAAGAAA TGCTA ATTT TAGCA TTTCTTTAATTTTTT RrIowa_0515 433259 - 432906 - | hypothetical protein RrIowa_0516 433431 - 433330 - | hypothetical protein hslV 433513 - 434061 + | ATP-dependent protease peptidase subunit TERM 370 434100 - 434088 - g 80 -4.7 -5.28778 | opp_overlap 434096 ACTACTTATAAAAAA GACCC TAT GGGGC TTACCCCTTCTCAAA hslU 434058 - 435410 + | ATP-dependent protease ATP-binding subunit RrIowa_0519 435978 - 435637 - | hypothetical protein RrIowa_0520 436315 - 436097 - | hypothetical protein chlI 436384 - 436896 + | ChlI RrIowa_0522 436999 - 437139 + | hypothetical protein RrIowa_0523 437196 - 437381 + | hypothetical protein TERM 371 437456 - 437432 - g 72 -2.7 -5.27923 | overlap 437434 GAAGTTGATAAAAAA CACCCTATGAA ATT TTCTTTGGGAG ATATGAGAGGTAAAA RrIowa_0524 437378 - 437947 + | hypothetical protein TERM 372 438851 - 438874 + G 79 -4 -5.55769 | ACTCCTATGATTGTG GCTTATAA AGTTAATA TTATAAGC TTTTTTATTATCAGG RrIowa_0525 437957 - 439297 + | lipid-A-disaccharide synthase RrIowa_0526 439566 - 439294 - | hypothetical protein RrIowa_0527 439863 - 440933 + | hypothetical protein RrIowa_0528 441073 - 441384 + | frataxin-like protein TERM 373 442351 - 442337 - f 82 -4.3 -5.54403 | opp_overlap 442337 AAAAAATAATAAAAA TTCTG TAAAT CAGAA TTCTAATTTCAAATC RrIowa_0531 442499 - 442975 + | hypothetical protein RrIowa_0534 444161 - 444355 + | hypothetical protein RrIowa_0535 445798 - 444455 - | glutamyl-tRNA synthetase TERM 374 445824 - 445844 + r 74 -9 -3.31726 | overlap 445822 TTTTATTAATTGTCA TCCTGTGG CTTGA CCACGGGA TCTTGTATCACAGCC RrIowa_0536 448237 - 445907 - | DNA topoisomerase I TERM 375 446217 - 446230 + g 73 -3.7 -5.08169 | opp_overlap 446217 CCAAGTTGAATATAA GGTCC GTAA GGTCC TTTTTTCAGATATAT TERM 376 446577 - 446553 - G 75 -7.2 -4.12456 | opp_overlap 446553 ATATTATGGTTAAAA CCGCTCCAAA AATTG TTTAAAGCGG CTTTCCATTCAAGTT TERM 377 446796 - 446766 - G 75 -8.3 -3.86814 | opp_overlap 446766, overlap 446769 AAAACCGATAAAATA CTAGCATAGGTCG AAGGA CGACCGATGCCAA GCTCTTCAAGTTTTT TERM 378 446793 - 446769 - G 77 -10 -2.98789 | opp_overlap 446766, overlap 446766 ACCGATAAAATACTA GCATAGGTCG AAGGA CGACCGATGC CAAGCTCTTCAAGTT TERM 379 447179 - 447200 + g 74 -2.3 -5.48054 | gap 1, overlap 447180 447189 ATTTGTGGGTCTTAT TGCTTCATGA GCT TCTTGA-GCA TTTTTTACTTTTGAT RrIowa_0539 449149 - 449337 + | hypothetical protein TERM 380 449370 - 449350 - T 72 -6.3 -4.32048 | opp_overlap 449350 TAATAAGACGTAAAA TATTAATTG TTT CAATCAATA TTATAAGATATTTTA RrIowa_0540 450264 - 449656 - | thioredoxin peroxidase RrIowa_0541 451278 - 450340 - | membrane protease family stomatin/prohibitin-like protein RrIowa_0542 451582 - 451352 - | hypothetical protein RrIowa_0543 453217 - 451649 - | integral membrane protein RrIowa_0544 453253 - 453717 + | Holliday junction resolvase-like protein TERM 381 453843 - 453866 + F 91 -9.8 -4.2828 | opp_overlap 453843 ATTTGACAAAATAAA CCTATAAAAA CTTG TTTTTATAGG TTTTACTGGATGCCC TERM 382 453866 - 453843 - f 100 -9.8 -4.77775 | opp_overlap 453843 ATTTGACAAAATAAA CCTATAAAAA CTTG TTTTTATAGG TTTTACTGGATGCCC RrIowa_0545 453984 - 454145 + | virulence-associated protein I RrIowa_0546 454316 - 455170 + | UDP-2-acetamido-2,6-dideoxy-beta-L-mannose 4-dehydrogenase RrIowa_0547 455353 - 456378 + | UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase RrIowa_0548 456371 - 457504 + | UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase TERM 383 457562 - 457578 + G 79 -3.7 -5.55664 | opp_overlap 457562 ATTAATAAAACTTAA CACTTTA TTT TTAAGTG TTTTTTTACTAATAA TERM 384 458244 - 458208 - g 95 -8.7 -5.29846 | opp_overlap 458207 458221 458233, overlap 458213 AATCTTAAAGAAAAA CCAAACTCGGAAACCAT TTT ATGGCTTCCTAGATGGG AATTATCATTTAAAA TERM 385 458239 - 458213 - g 100 -10.2 -4.46652 | opp_overlap 458207 458221 458233, overlap 458208 TAAAGAAAAACCAAA CTCGGAAACCAT TTT ATGGCTTCCTAG ATGGGAATTATCATT RrIowa_0549 457533 - 458810 + | hypothetical protein TERM 386 458990 - 458980 - g 72 -2.6 -5.37593 | TGCTAAATCAAAAAA TAAA AAT TTTA GATATAGGTTGTGGA RrIowa_0550 458826 - 459311 + | methyltransferase RrIowa_0551 459484 - 459588 + | hypothetical protein RrIowa_0552 459747 - 461561 + | glycosyltransferase RrIowa_0553 462564 - 461566 - | periplasmic component of efflux system TERM 387 461838 - 461861 + g 74 -6.8 -4.28254 | overlap 461841 AGCTATTATGCAGGA TTTTTGTACC CATA GGTACAATAA TTTTAGCTGTTAAAG TERM 388 461841 - 461858 + g 71 -8.5 -3.13737 | overlap 461838 TATTATGCAGGATTT TTGTACC CATA GGTACAA TAATTTTAGCTGTTA RrIowa_0554 463451 - 462657 - | hypothetical protein RrIowa_0555 464228 - 463461 - | alpha/beta hydrolase family protein capM 464261 - 465433 + | glycosyltransferase RrIowa_0557 466543 - 466256 - | hypothetical protein RrIowa_0558 466724 - 466614 - | hypothetical protein TERM 389 467859 - 467825 - R 74 -6.6 -4.20516 | opp_overlap 467826 467832, overlap 467826 467832 GGTGTAGGGAAGAAA GTAAAAAGGCAGAT AAATAAA ACCTGCCTTTTTAT AATTGTTAACGAGAA TERM 390 467858 - 467826 - R 78 -10.1 -3.11988 | opp_overlap 467826 467832, overlap 467825 467832 GTGTAGGGAAGAAAG TAAAAAGGCAGAT AAATAAA ACCTGCCTTTTTA TAATTGTTAACGAGA TERM 391 467852 - 467832 - R 75 -4.7 -5.09521 | opp_overlap 467832 467826, overlap 467826 467825 GGAAGAAAGTAAAAA GGCAGAT AAATAAA ACCTGCC TTTTTATAATTGTTA RrIowa_0559 468482 - 467865 - | 30S ribosomal protein S4 RrIowa_0560 468607 - 469524 + | protoheme IX farnesyltransferase TERM 392 469512 - 469536 + T 74 -8.7 -3.29386 | opp_overlap 469535 AACTAACACTATATC CACTATTAGCT GAG AGATAATAGTG TTGGGTTACTTTTAT RrIowa_0561 470558 - 469806 - | spore photoproduct lyase RrIowa_0562 470674 - 470889 + | hypothetical protein TERM 393 471214 - 471204 - g 84 -4 -5.67283 | AATCCAAATAAAAAA TCAT TAT ATGA AGACCTTATTATTTT TERM 394 471321 - 471301 - g 73 -7 -3.90316 | opp_overlap 471301, overlap 471299 ATTTCCCTAAAAACA TACCTAAT TTGGT ATTAGGTA CTGAGGAAACAAAGG RrIowa_0563 470961 - 471395 + | hypothetical protein RrIowa_0564 474055 - 471536 - | outer membrane assembly protein TERM 395 474316 - 474289 - R 74 -8.4 -3.58343 | overlap 474293 TTTAGTATTTTTAAA TGGATCCCGTGG CACG CCACGGGATGAA ACAGAGGTGAATAAG TERM 396 474312 - 474293 - R 100 -13.6 -2.64803 | overlap 474289 GTATTTTTAAATGGA TCCCGTGG CACG CCACGGGA TGAAACAGAGGTGAA rimM 474873 - 474376 - | 16S rRNA-processing protein RrIowa_0566 474891 - 477566 + | hypothetical protein RrIowa_0567 477579 - 477821 + | exodeoxyribonuclease VII small subunit RrIowa_0568 477969 - 478433 + | hypothetical protein TERM 397 479039 - 479052 + T 76 -6.7 -4.46112 | AATTTTTGTCTGTAT GCTTG GCAC CAAGC TTTATTTACATAAGA RrIowa_0572 479724 - 479173 - | 3-methyladenine DNA glycosylase RrIowa_0573 479920 - 479717 - | hypothetical protein RrIowa_0574 480265 - 480017 - | putative cytoplasmic protein RrIowa_0575 480761 - 480258 - | NADH dehydrogenase subunit E TERM 398 480656 - 480670 + g 70 -4.3 -4.66609 | CTAGATCAAGCAGCG GAAGT ATTGC ACTTC TTTTTCCATGCGGTG TERM 399 481062 - 481090 + r 76 -2.6 -5.52347 | CCATGCTTATTAGAG CATAAGATATAT ACCCA ATATATTTTTTG TTTTTTAGTTTTATT RrIowa_0576 482427 - 481174 - | NADH dehydrogenase subunit D RrIowa_0577 483068 - 482448 - | NADH dehydrogenase subunit C RrIowa_0578 483678 - 483154 - | NADH dehydrogenase subunit B RrIowa_0579 484216 - 483683 - | NADH dehydrogenase subunit A TERM 400 484150 - 484104 - G 100 -15.2 -3.28261 | opp_overlap 484098 484146, overlap 484113 484117 AGAATTGCACAGTAA TGCGACGAAGCAATCTCAGGAA AAA TTCCTGAGATTGCCACGCAGCC TACGGCTGTTTGCAA TERM 401 484141 - 484113 - G 100 -19.1 -3.19157 | opp_overlap 484098, overlap 484104 484117 CAGTAATGCGACGAA GCAATCTCAGGAA AAA TTCCTGAGATTGC CACGCAGCCTACGGC TERM 402 484137 - 484117 - G 93 -12.7 -3.40639 | opp_overlap 484098, overlap 484113 484104 AATGCGACGAAGCAA TCTCAGGAA AAA TTCCTGAGA TTGCCACGCAGCCTA TERM 403 484146 - 484158 + g 80 -9.1 -3.60627 | opp_overlap 484104, overlap 484098 CCTGAGATTGCCACG CAGCC TAC GGCTG TTTGCAATGACGTAG RrIowa_0580 485448 - 484213 - | O-antigen polymerase TERM 404 485255 - 485284 + g 79 -8.7 -3.75105 | gap 1, overlap 485259 TCTTTTTTTATTTTT TG-GATACCGTGGT CAA GCCACGGTATTACA TTGTTACTGGATTGC TERM 405 485259 - 485279 + g 89 -11.9 -3.30203 | overlap 485255 TTTTTATTTTTTGGA TACCGTGGT CAA GCCACGGTA TTACATTGTTACTGG RrIowa_0581 485922 - 485449 - | hypothetical protein TERM 406 486022 - 486050 + H 100 -14.7 -3.15579 | opp_overlap 486017 486035, overlap 486026 ATTTCAAGGAGCGTG GCAATCTCAGGAA TTT TGCCTGAGATTGC TTAGTCAAAACTTAC TERM 407 486026 - 486046 + H 73 -8.3 -3.39895 | opp_overlap 486017 486035, overlap 486022 CAAGGAGCGTGGCAA TCTCAGGAA TTT TGCCTGAGA TTGCTTAGTCAAAAC RrIowa_0585 487717 - 488637 + | site-specific tyrosine recombinase XerD RrIowa_0586 488720 - 489739 + | hypothetical protein TERM 408 489882 - 489871 - g 79 -4.4 -5.29208 | AAAATAAAAAAGAAA CAGT GAAT ACTG AAACAAAAAATTTAG TERM 409 490865 - 490832 - g 88 -6.9 -5.00138 | TAGTGAAATGAAAAA TTCTTATACTCCTTT AAAG ATAGAAGTACAAGAA CAGTTAAAACAAATC RrIowa_0587 489846 - 491009 + | hypothetical protein TERM 410 491044 - 491068 + T 70 -8.6 -2.54193 | GAAAAATACAATTGT CATCCCGTGA TTTAT TCACGGGATC TAGCTTAAAATACTA TERM 411 491073 - 491101 + T 83 -7.7 -4.52873 | opp_overlap 491079, overlap 491079 TTCACGGGATCTAGC TTAAAATACTAAT AAT ATTAGTATTTTTA TTGTTTTTATGGACC TERM 412 491095 - 491079 - T 72 -6.7 -4.14739 | opp_overlap 491073 491079 GGATCTAGCTTAAAA TACTAAT AAT ATTAGTA TTTTTATTGTTTTTA TERM 413 491079 - 491095 + T 90 -6.7 -5.51353 | opp_overlap 491079, overlap 491073 GGATCTAGCTTAAAA TACTAAT AAT ATTAGTA TTTTTATTGTTTTTA RrIowa_0588 491988 - 491206 - | enoyl-(acyl carrier protein) reductase TERM 414 491829 - 491844 + g 75 -4.7 -4.93296 | AACCTATTTCCTCAG CGAGT GGTTTA ACTCG TTTTTCTAGTACTCC RrIowa_0589 492064 - 493563 + | apolipoprotein N-acyltransferase RrIowa_0590 493682 - 493828 + | hypothetical protein TERM 415 493970 - 493955 - f 72 -4.8 -4.89477 | overlap 493962 CTCCTAATAATAAAA TTGAAT ATCT ATTCAA AGAAATAGAAAGTGA RrIowa_0591 494267 - 495070 + | anhydro-N-acetylmuramyl-tripeptide amidase TERM 416 495215 - 495246 + F 74 -7.6 -3.76186 | opp_overlap 495216 495223, overlap 495216 495223 TGATCGCGGGATCCA ATTTAAAATACTAA AAAT TTAGTATTTTAAAG TTACTTTTATGGATG TERM 417 495216 - 495245 + F 82 -11.1 -2.84989 | opp_overlap 495216 495223, overlap 495215 495223 GATCGCGGGATCCAA TTTAAAATACTAA AAAT TTAGTATTTTAAA GTTACTTTTATGGAT TERM 418 495245 - 495216 - f 85 -11.1 -3.05596 | opp_overlap 495216 495215 495223, overlap 495223 GATCGCGGGATCCAA TTTAAAATACTAA AAAT TTAGTATTTTAAA GTTACTTTTATGGAT TERM 419 495585 - 495569 - f 70 -5.3 -4.67552 | overlap 495566 TGCAGTAAAAAATAA TTTAATT ACC AATTAAA ACTTATTTACAGATA TERM 420 495844 - 495854 + G 86 -2.6 -5.94214 | opp_overlap 495844 TGTTTATCTCTAATA TTTT TCA AAAA TTTTTTTCTTGTCTT RrIowa_0592 495828 - 496745 + | ABC transporter substrate-binding protein RrIowa_0593 496750 - 497589 + | ABC transporter permease protein TERM 421 498213 - 498197 - g 86 -10.9 -3.29558 | overlap 498195 GCATAATTTAGAAGA TGCCGTA AAT TACGGCA AAAGGCTTATAGTCT RrIowa_0594 497586 - 498308 + | ABC transporter ATP-binding protein RrIowa_0595 498803 - 498399 - | hypothetical protein RrIowa_0596 499245 - 498823 - | hypothetical protein RrIowa_0597 499769 - 499617 - | hypothetical protein RrIowa_0598 500002 - 499865 - | hypothetical protein RrIowa_0599 500633 - 500115 - | disulfide bond formation protein B TERM 422 500652 - 500710 + H 76 -9.3 -3.07523 | gap 4 TTTTTGTTCTTAATG ----TCATTGCGAGCGACTGCCAGGAG CGTGGCAAT CTCCTGGCAGTCGCTCGCAATGACGGC GTTTAATTTGATATT TERM 423 501385 - 501371 - g 73 -8.6 -3.28785 | TCCGAAAACAGGTAA GGTACT GCA AGTACC TATAGAGAAATGGGA TERM 424 502282 - 502297 + G 89 -9 -4.41241 | opp_overlap 502281 502282 TTGGACAGAATGAAG GTCCCA GACT TGGGAC TTTTATAAAGCTTTA RrIowa_0600 500787 - 502355 + | lysyl-tRNA synthetase RrIowa_0601 502489 - 503421 + | transporter TERM 425 503493 - 503452 - g 73 -9.5 -2.79878 | gap 1, opp_overlap 503459 503463, overlap 503451 503454 GCGAGCGACTGAAAG GAGCGTGGCAATCTCAGGAA TGT TGCCTGAGATTGCTTCG-TC GATGCCTATTGCGTT TERM 426 503459 - 503487 + G 95 -14.7 -3.19091 | opp_overlap 503454 503452 503451, overlap 503463 ACTGAAAGGAGCGTG GCAATCTCAGGAA TGT TGCCTGAGATTGC TTCGTCGATGCCTAT TERM 427 503463 - 503483 + G 72 -8.3 -3.40867 | opp_overlap 503454 503452 503451, overlap 503459 AAAGGAGCGTGGCAA TCTCAGGAA TGT TGCCTGAGA TTGCTTCGTCGATGC TERM 428 504029 - 504017 - g 74 -3.5 -5.25699 | ATTATAGAAGAAAAA TTAAA ATC TTTAA TGGATATACCGGTCT TERM 429 504500 - 504518 + G 73 -9 -3.29381 | opp_overlap 504511, overlap 504492 ATAGCAACAGGGCGA TCTGATTA TAA TAATCAGA TTAATAATGTTATGG RrIowa_0602 503435 - 505861 + | malic enzyme RrIowa_0603 505890 - 506063 + | hypothetical protein ralF 506467 - 506766 + | protein transport protein SEC7 RrIowa_0605 506939 - 506829 - | hypothetical protein RrIowa_0606 507358 - 506972 - | hypothetical protein RrIowa_0607 507599 - 507351 - | hypothetical protein RrIowa_0608 507793 - 509049 + | proline/betaine transporter TERM 430 509084 - 509109 + T 78 -9.7 -3.21062 | opp_overlap 509083 AAAAACCTACTCAAT GTCATCCCTGC GAAA GCGGGGATAAC TTCAATATTGATATA TERM 431 509139 - 509165 + T 91 -9.7 -4.26903 | opp_overlap 509139 ATTTGACAAAATAAA CACATAAAAAA CTTGT TTTTTTATGTG TTTTACTGGAGTCCC TERM 432 509165 - 509139 - T 100 -9.7 -4.77775 | opp_overlap 509139 ATTTGACAAAATAAA CACATAAAAAA CTTGT TTTTTTATGTG TTTTACTGGAGTCCC RrIowa_0609 509433 - 509248 - | hypothetical protein RrIowa_0610 509898 - 509569 - | hypothetical protein RrIowa_0611 510145 - 509930 - | hypothetical protein RrIowa_0612 510517 - 510191 - | hypothetical protein TERM 433 510552 - 510540 - H 71 -7.7 -3.53444 | opp_overlap 510531 510540 TCATCCTGCTCTAAA GCGAT ATT ATCGC TTCTACGCTCCTCAC RrIowa_0613 511043 - 511273 + | hypothetical protein TERM 434 511317 - 511328 + T 74 -3 -5.39681 | CTTGAATTATTAGTA TTAC GGAA GTAA TTTTTATTTACTTAT RrIowa_0616 512005 - 511904 - | hypothetical protein RrIowa_0617 512428 - 512075 - | hypothetical protein RrIowa_0618 513505 - 512561 - | malate dehydrogenase TERM 435 513679 - 513663 - H 70 -5.1 -4.66163 | opp_overlap 513663, overlap 513665 ATGTCGAGTCAAAAA TACCATG AAA CATGGAA TTTTAATAAAATAAC TERM 436 513677 - 513665 - H 76 -7.7 -3.94812 | opp_overlap 513663, overlap 513663 GTCGAGTCAAAAATA CCATG AAA CATGG AATTTTAATAAAATA RrIowa_0619 513869 - 514045 + | hypothetical protein RrIowa_0620 514075 - 514326 + | hypothetical protein RrIowa_0621 514389 - 514493 + | hypothetical protein TERM 437 514594 - 514626 + T 81 -3.6 -5.53991 | opp_overlap 514598, overlap 514598 514623 AGGCGGAAATCTAGT AAAACCTATAAAAA ATTTG TTTTTTTAGGTTTA TTTTTTTAATAAATA TERM 438 514598 - 514622 + T 75 -4.4 -5.23943 | opp_overlap 514598, overlap 514594 GGAAATCTAGTAAAA CCTATAAAAA ATTTG TTTTTTTAGG TTTATTTTTTTAATA RrIowa_0622 516483 - 514960 - | ADP,ATP carrier protein TERM 439 516555 - 516598 + r 100 -24 -4.59109 | TTTGCAAGGCTTAGA GCTTTAGAGGCCATTCCCGC ATAT GCGGGAATGGCCTCAAACGC TTTTTAGAAACTGTC RrIowa_0623 518306 - 516693 - | CTP synthetase TERM 440 516878 - 516896 + g 71 -7.6 -3.56576 | overlap 516846 516874 516874 ATACTATTCCGTGTT TTTCAAAA ATA TTTTGAAA TTCATTATTAAATTT RrIowa_0624 519049 - 518309 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 441 519281 - 519265 - H 70 -8.7 -2.62396 | overlap 519267 CAGCTGGTTAGAGCA CACGCCT GAT AAGCGTG AGGTCGGAAGTTCAA RrIowa_0627 519420 - 519527 + | hypothetical protein RrIowa_0628 519933 - 519805 - | hypothetical protein TERM 442 519849 - 519867 + g 71 -7.5 -3.53811 | opp_overlap 519848 GATTCTGTAATTCAT GCTCATT TAAAC AATGAGC TTTAAGGCAAATCAA TERM 443 521515 - 521527 + G 77 -9.1 -3.31144 | opp_overlap 521508 CTAGATTATCGCGTC GGCAC TTC GTGCC TTCTCGCAATGACAA RrIowa_0629 520263 - 521786 + | hypothetical protein RrIowa_0630 521779 - 522348 + | GTP cyclohydrolase I TERM 444 522474 - 522442 - f 93 -5.7 -6.11019 | gap 2, overlap 522443 AAAAATTAAAAAAAA CTGG--ATCCCGTGG TCAAG CCACGGGATAACCAA ATAAATGATTATAAA TERM 445 522473 - 522443 - f 74 -7 -4.21121 | gap 2, overlap 522442 AAAATTAAAAAAAAC TGG--ATCCCGTGG TCAAG CCACGGGATAACCA AATAAATGATTATAA TERM 446 523204 - 523191 - g 72 -2.5 -5.32882 | TATTACGATAAAAAA TTTAA GATA TTAAA AGATAATCCTGATAT RrIowa_0631 522513 - 523793 + | prolyl-tRNA synthetase TERM 447 523981 - 524004 + F 85 -11.2 -2.81464 | opp_overlap 523981 523989 523999 524002, overlap 523981 523986 ATTCTTCGTAGACAA TGATAGTATC ATAT GATACTATCA TATAATGAATAGTAA TERM 448 524004 - 523981 - f 93 -11.2 -3.48395 | opp_overlap 523981 523981 523986, overlap 523989 523999 524002 ATTCTTCGTAGACAA TGATAGTATC ATAT GATACTATCA TATAATGAATAGTAA TERM 449 524144 - 524134 - g 72 -2.6 -5.35222 | AAAACTTAGAAAAAA TAAT CAA ATTA AAACCATCTATTCTT RrIowa_0632 524009 - 524977 + | Fic family protein TERM 450 524954 - 524972 + F 73 -9 -3.2082 | opp_overlap 524954 524953 524958, overlap 524958 AAAGGGGATAAGAAT CAAACTTA TTA TAAGTTTG TGTAGTTTTTAATGT TERM 451 524972 - 524954 - f 72 -9 -2.89234 | opp_overlap 524954 524958, overlap 524953 524958 AAAGGGGATAAGAAT CAAACTTA TTA TAAGTTTG TGTAGTTTTTAATGT RrIowa_0633 525217 - 525375 + | hypothetical protein TERM 452 525862 - 525886 + G 77 -8.7 -3.57144 | opp_overlap 525861 525862 525871 TGAAGTAATAAAAGC TCTAGTAAATC TAG GATTTTCTAGA TTTGAAGCTCAAAAC ruvA 525380 - 525994 + | Holliday junction DNA helicase motor protein RrIowa_0635 526275 - 526475 + | hypothetical protein RrIowa_0636 526509 - 526793 + | hypothetical protein TERM 453 526957 - 526994 + G 73 -8.8 -3.23393 | overlap 526950 526954 CTATTTTTTGGCTAT TATTAGTCATTATTTT AAATCA AATATAATGACTAATA TATTATCACCTGAAA ruvB 526949 - 528013 + | Holliday junction DNA helicase B TERM 454 528762 - 528748 - g 93 -7.2 -5.61596 | overlap 528759 AGTTCTACAAAAAAA CATCTA AGC TAGATG CGATGGTTGCACCGA RrIowa_0638 528006 - 529769 + | phospholipid-lipopolysaccharide ABC transporter RrIowa_0639 529766 - 529870 + | hypothetical protein TERM 455 530272 - 530288 + G 74 -5.2 -4.64992 | AGCAAGGCAAATCCT GAAGTT TCTTT AACTTC TTTATATTTTTTGAC TERM 456 530619 - 530630 + G 73 -4.4 -5.00616 | opp_overlap 530619 TTCTACAGTAATTAA TCCT TTCC AGGA TTTTTTCAAAAGAGA ampG.1 529960 - 531204 + | AmpG RrIowa_0641 531381 - 532301 + | D-alanyl-D-alanine serine-type carboxypeptidase RrIowa_0642 533396 - 532473 - | lipoprotein RrIowa_0643 534030 - 533413 - | lipoprotein TERM 457 534183 - 534216 + r 76 -7.7 -4.03234 | opp_overlap 534193, overlap 534186 534187 534193 CTTGATCGTGGGATC CAGCTTAAAATACTA GTAC TAGTATTTTAAATTG TTTGTATGGACCCCC TERM 458 534187 - 534212 + r 76 -9.3 -3.08294 | opp_overlap 534193, overlap 534186 534183 534193 ATCGTGGGATCCAGC TTAAAATACTA GTAC TAGTATTTTAA ATTGTTTGTATGGAC TERM 459 534342 - 534313 - R 70 -3.7 -5.07011 | GACATAAAGTAAAAA TAGTAAGGTATTA TATA TCATATCTTACTA TCCGGTAATTTATTC RrIowa_0644 534872 - 534330 - | intracellular septation protein A TERM 460 534410 - 534397 - G 70 -3.9 -4.95487 | overlap 534403 AAAATAAATATAAAA GTAAT AGGT ATTAC ACCGAATACTTTGAA RrIowa_0645 535750 - 534902 - | high-affinity iron permease TERM 461 534931 - 534955 + g 73 -3.7 -5.05113 | TTTTTTGTACTGATA TTAAGTTATTT TTG GAATATCTTAA TTTTATTTGTATGAA RrIowa_0646 536140 - 535760 - | hypothetical protein RrIowa_0647 536324 - 536217 - | hypothetical protein RrIowa_0648 537326 - 536331 - | FKBP-type peptidyl-prolyl cis-trans isomerase RrIowa_0649 537465 - 538091 + | protocatechuate 3,4-dioxygenase beta subunit TERM 462 538155 - 538192 + T 72 -6.3 -4.33907 | gap 1, opp_overlap 538136 538160 TCTCAGGATATTTGA CGAGATTGCCACGCAGTC TAC GACTGC-TCGCAATGACG TTTTGCCTCTTTCTG RrIowa_0650 538282 - 538172 - | hypothetical protein TERM 463 538212 - 538223 + g 70 -2.2 -5.24129 | GCCTCTTTCTGCGGT GCTT CTAA AGGC TTTTTTATACCACAA TERM 464 538347 - 538362 + G 71 -3.4 -5.1356 | TATATTATAGTATTT TTATTA TATA TAATAA TTTTTATTCCTAAAA tlpA 538299 - 538943 + | thiol:disulfide interchange protein sppA.1 539108 - 540022 + | signal peptide peptidase TERM 465 540086 - 540062 - g 83 -7.1 -4.76171 | opp_overlap 540065 540075, overlap 540057 540063 TAAAAAACTAGAAAA TTTTTCCGGCA GTT TGCCGGAATAT GCTACAGAGCATAGT TERM 466 540085 - 540063 - g 85 -10.6 -3.43262 | opp_overlap 540065 540075, overlap 540057 540062 AAAAAACTAGAAAAT TTTTCCGGCA GTT TGCCGGAATA TGCTACAGAGCATAG TERM 467 540065 - 540083 + G 87 -13.2 -2.78463 | opp_overlap 540057 540063 540062, overlap 540075 AAAACTAGAAAATTT TTCCGGCA GTT TGCCGGAA TATGCTACAGAGCAT TERM 468 540234 - 540220 - g 73 -7.1 -3.96618 | TTGAAGCCCAAATAA GACCC CGTTC GGGTC TTGCCGTTAAACACG RrIowa_0653 540024 - 540470 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 469 540553 - 540578 + F 100 -10.7 -4.31379 | opp_overlap 540553 TACATATTAGATAAA CCTATAAAAAA TAAG TTTTTTATAGG TTTTACTGGATTCCT TERM 470 540578 - 540553 - f 100 -10.7 -4.12475 | opp_overlap 540553 TACATATTAGATAAA CCTATAAAAAA TAAG TTTTTTATAGG TTTTACTGGATTCCT TERM 471 540690 - 540676 - f 70 -5.8 -4.2123 | overlap 540685 TATCCACGCAACAAA TCATAA AAC TTATGA AAATCACAATAGAAT RrIowa_0654 540687 - 542648 + | soluble lytic murein transglycosylase RrIowa_0655 542735 - 543694 + | hypothetical protein TERM 472 543915 - 543925 + G 76 -2.6 -5.50499 | AAAATATATCTTTAC TAAT AAT ATTA TTTTTTTCAATATCA TERM 473 544265 - 544283 + G 73 -4.6 -4.96848 | TTTATAGGATATAGC GATATAAC AGC GTTACATC TTTTTCTATCACAAG RrIowa_0656 543890 - 544837 + | muramoyltetrapeptide carboxypeptidase RrIowa_0657 547575 - 545059 - | ATP-dependent nuclease subunit B TERM 474 545613 - 545600 - G 82 -5.3 -5.34857 | TCAAATAAAATAAAA GCTTT GCTG AAAGC CGTGAGTTTTATTTG TERM 475 546364 - 546354 - G 91 -2.6 -6.04324 | opp_overlap 546354 GTAAAAAAGAAAAAA TTTT AGG AAAA TCCTTTTTATCCGTT TERM 476 548000 - 548012 + G 76 -6.3 -4.60797 | AACTAGAAGGTAATT GTAGA GGT TCTAC TTTTGTATATGAACG RrIowa_0658 547834 - 548115 + | hypothetical protein RrIowa_0659 548847 - 548119 - | glutamine amidotransferase, class I RrIowa_0660 550655 - 549054 - | cytochrome c oxidase polypeptide I RrIowa_0661 551044 - 550661 - | hypothetical protein RrIowa_0662 552184 - 551237 - | cytochrome c oxidase polypeptide II TERM 477 553664 - 553652 - g 74 -3.3 -5.27938 | AGCGTCAAATAAAAA GCGGT GAT ACTGC AACCGTAATAACGGA TERM 478 553757 - 553743 - g 70 -7.2 -3.73402 | opp_overlap 553742 ATATGTTTCATTAAA TCTTTC AGG GAAAGA ATATAATATATACCG TERM 479 554055 - 554043 - g 71 -7.7 -3.6993 | opp_overlap 554043 554045, overlap 554041 TATTCAGGTAAAACA TAGCG GTA CGCTA TCTACTGCTTATGCG RrIowa_0663 552928 - 554358 + | peptidoglycan-specific endopeptidase, M23 family TERM 480 554442 - 554467 + F 100 -9.3 -4.77775 | opp_overlap 554442 GGGAATCTAGTAGAA TCTATAAAAAA CTTG TTTTTTATAGA TTTATTTTATCAAAT TERM 481 554467 - 554442 - f 79 -9.3 -3.44319 | opp_overlap 554442 GGGAATCTAGTAGAA TCTATAAAAAA CTTG TTTTTTATAGA TTTATTTTATCAAAT TERM 482 554769 - 554779 + G 74 -5.4 -4.71426 | opp_overlap 554767 554769 TGAATATTATCAATA TAGC AAT GCTA TTTTCTTAATAACGA TERM 483 554850 - 554887 + G 73 -8.5 -3.26433 | opp_overlap 554847, overlap 554852 TTCAAAAACGATCGG AAGCTTTGCCGGTTATA GCTT TGTAATCGGCGGAGCTG TTGGTAATCTAATTG TERM 484 554852 - 554885 + G 86 -11.1 -3.19117 | opp_overlap 554847, overlap 554850 CAAAAACGATCGGAA GCTTTGCCGGTTATA GCTT TGTAATCGGCGGAGC TGTTGGTAATCTAAT RrIowa_0664 554539 - 555159 + | lipoprotein signal peptidase RrIowa_0665 555326 - 555574 + | hypothetical protein TERM 485 556642 - 556654 + G 76 -7.7 -4.00468 | AAACCTGCACAATTC GCTTG TAT CAAGC TTTATGCATTATACT RrIowa_0666 555746 - 557248 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 486 557252 - 557269 + F 81 -2.8 -5.80727 | opp_overlap 557252, overlap 557245 557242 GGGTCTAGTTAAAAA TACTAA ATAATA TTAGTA TTTTTTATTGTTTTT ftsW 557365 - 558513 + | cell division protein TERM 487 558674 - 558645 - g 73 -8.8 -3.16659 | opp_overlap 558645 558644 558647, overlap 558644 558640 558647 AAACAATATATAAAG CAGGATATGAAA GTAATT TTTCATATCCTA GATTTAAAACGCTCA TERM 488 558672 - 558647 - g 74 -9.2 -3.11905 | opp_overlap 558647 558645 558644, overlap 558645 558644 558640 ACAATATATAAAGCA GGATATGAAA GTAATT TTTCATATCC TAGATTTAAAACGCT TERM 489 558647 - 558672 + G 75 -9.9 -2.64274 | opp_overlap 558645 558644 558640 558647, overlap 558645 558644 ACAATATATAAAGCA GGATATGAAAG TAAT TTTTCATATCC TAGATTTAAAACGCT TERM 490 558907 - 558885 - g 74 -6.4 -4.32607 | opp_overlap 558900 GGAAAAGTTAATAAA TTTTTTGCAA GCT TTGCTAAAAA GATAGCTATTTCTTA RrIowa_0668 558510 - 559640 + | N-acetylglucosaminyl transferase RrIowa_0669 560035 - 560685 + | hypothetical protein RrIowa_0670 560843 - 560950 + | hypothetical protein RrIowa_0671 560979 - 561098 + | hypothetical protein RrIowa_0672 561095 - 561244 + | hypothetical protein RrIowa_0673 561258 - 561434 + | hypothetical protein TERM 491 561469 - 561505 + T 76 -6.9 -4.45485 | opp_overlap 561479, overlap 561473 561473 561479 CTTGTCCATGGGAGC TAGTCAAAAATACTAAT ATT ATTAGTATTTTTAGTTA TTTTCTGGATATCGT TERM 492 561473 - 561502 + T 77 -7.5 -4.33785 | gap 1, opp_overlap 561479, overlap 561473 561469 561479 TCCATGGGAGCTAGT C-AAAAATACTAAT ATT ATTAGTATTTTTAG TTATTTTCTGGATAT TERM 493 561479 - 561495 + T 83 -6.7 -5.07971 | opp_overlap 561479, overlap 561473 561473 561469 GGAGCTAGTCAAAAA TACTAAT ATT ATTAGTA TTTTTAGTTATTTTC TERM 494 561495 - 561479 - T 78 -6.7 -4.67353 | opp_overlap 561479 561473 561473 561469 GGAGCTAGTCAAAAA TACTAAT ATT ATTAGTA TTTTTAGTTATTTTC RrIowa_0674 561863 - 561642 - | acriflavin resistance plasma membrane protein RrIowa_0675 562567 - 561860 - | acriflavin resistance plasma membrane protein RrIowa_0676 563341 - 562574 - | acriflavin resistance plasma membrane protein RrIowa_0677 563655 - 563338 - | acriflavin resistance plasma membrane protein RrIowa_0678 564149 - 563814 - | acriflavin resistance plasma membrane protein RrIowa_0679 564444 - 564313 - | acriflavin resistance plasma membrane protein RrIowa_0680 564681 - 564586 - | acriflavin resistance plasma membrane protein RrIowa_0683 565885 - 565709 - | acriflavin resistance periplasmic protein TERM 495 566756 - 566776 + r 80 -9.7 -3.30474 | TTAATAAGGTTAAGC TGTGCTTGC GCT GCTAGCACA TTACTCATTGTCAGC RrIowa_0686 567040 - 566882 - | hypothetical protein RrIowa_0687 568282 - 567263 - | glycosyltransferase RrIowa_0688 568573 - 568286 - | hypothetical protein TERM 496 568593 - 568618 + H 85 -5.5 -5.45652 | TCTAGAGTGCTTTCA TGTGCATGTTT AAAG AAATATGCCCA TTTTTTCTTGAAGGT TERM 497 568699 - 568687 - H 72 -4.9 -4.98672 | TCTAAAAAGATAAAA TACAA ATC TTGTA GGTCGTTCTCATAAG RrIowa_0691 569261 - 570073 + | diaminopimelate epimerase RrIowa_0692 570048 - 571313 + | tRNA 2-methylthioadenosine synthase-like protein TERM 498 571422 - 571408 - f 88 -4.3 -5.73672 | opp_overlap 571408 AAATAATTAAAAAAA TTCTG ATTTA CAGAA TTTTGAACTGGATTG RrIowa_0693 571508 - 572605 + | phenylalanyl-tRNA synthetase subunit alpha TERM 499 573297 - 573283 - g 76 -4.2 -5.08015 | AATTTAAAAAATAAA CCAAGC CCT GATTGG TTACGGAAATTATTA TERM 500 573515 - 573488 - g 77 -9.2 -3.2024 | gap 1, opp_overlap 573484 573488, overlap 573463 573486 573484 GACAACAAAATGAGA TTGCCACGGCTGC TTT GCAGCC-TCGCAA TGACTTAGCTAAATG TERM 501 573488 - 573515 + G 72 -9.2 -2.55213 | gap 1, opp_overlap 573463 573488 573486 573484, overlap 573484 GACAACAAAATGAGA TTGCCACGGCTGC TTT GCAGCC-TCGCAA TGACTTAGCTAAATG RrIowa_0694 572602 - 575058 + | phenylalanyl-tRNA synthetase subunit beta TERM 502 575655 - 575632 - g 74 -6.1 -4.49317 | AAAACAAATAAAGAA TTTTGGAGT TATATT ACCCCAAAA AAGTGCAGAGGAAAT RrIowa_0695 575063 - 576202 + | DNA polymerase III subunit beta RrIowa_0696 576208 - 576330 + | DnaJ family molecular chaperone RrIowa_0697 576296 - 576400 + | DnaJ family molecular chaperone TERM 503 576411 - 576446 + T 71 -2.4 -5.41143 | AATAATTAAATCTGC CCTATGTCATTCCCGC ATAG GCGGGCATCGAGTGGG TTTTTTTGAGCCATA RrIowa_0698 576538 - 576401 - | hypothetical protein RrIowa_0699 576551 - 577060 + | putative cytoplasmic protein TERM 504 577256 - 577237 - g 80 -5 -5.29445 | TGGCAAGAAGAAAAA GCTTTTGA GGTA TCAAACGC GAGTAGCAAGCCAAA RrIowa_0700 577189 - 579696 + | leucyl-tRNA synthetase TERM 505 579855 - 579875 + T 72 -9 -3.01497 | overlap 579863 TTTTTGAATCTGTCA TCCCGCGA CTTGA TCGTGGGA TCTAGTTTAAAATAC TERM 506 580591 - 580573 - T 85 -4.6 -5.54192 | AGTAATTTAAAAAAA TCAATTAG CTA CTAATAGA CTGGCTGTAATAAAT RrIowa_0701 580689 - 580573 - | hypothetical protein RrIowa_0702 581384 - 580773 - | ribonuclease D TERM 507 581510 - 581489 - R 82 -7.3 -4.78205 | overlap 581491 581492 AAAAAAATTACAAAA GACTGGATC CCGC GATCAAGTC GCGGGATGACAACAA RrIowa_0703 581838 - 581533 - | septum formation initiator RrIowa_0704 582500 - 581835 - | phosphatidate cytidylyltransferase TERM 508 582037 - 582021 - G 71 -6.7 -4.10934 | opp_overlap 582031 ACAACTAATTATAAA CAAATAA ATT TTATTTG CAAAATAGTAATTTT TERM 509 582154 - 582170 + g 89 -10.9 -3.66666 | TTAGGACTAAGTTTC GGAGCAA GTT TTGCTCC TTTAAAAGTTTTGCC RrIowa_0705 583194 - 582487 - | undecaprenyl pyrophosphate synthetase TERM 510 583280 - 583229 - R 81 -8.3 -4.30978 | gap 2, overlap 583230 TGCAAGCGACTAAAA GGAGCGTGGCAATCTCATGAAAC AATATAAA ATTTC-TGAGATTGTCACGC-CC TCGGCTTTGCCTATC TERM 511 583280 - 583230 - R 85 -10.7 -3.18105 | gap 1, overlap 583229 GCAAGCGACTAAAAG GAGCGTGGCAATCTCATGAAAC AATATAAA ATTTC-TGAGATTGTCACGCCC TCGGCTTTGCCTATC envZ 584596 - 583340 - | osmolarity sensor protein TERM 512 584017 - 584007 - G 71 -3.2 -5.03314 | opp_overlap 584002 584000, overlap 583989 TTCATTTTTAAAAAA GCAA GCC CTGC TTTTCTTATTTCTAA TERM 513 584651 - 584639 - R 71 -7.7 -3.40112 | opp_overlap 584638 AGCATATTTCAAAGA GCTTG ATA CAAGC GAATTTTTCAAGATT ompR 585434 - 584754 - | transcriptional regulatory protein TERM 514 586167 - 586153 - g 70 -4.2 -4.68456 | ACGAGTAAAAAAGAA GCTAAG GCT CTTGGC TATGAGGATGCATTA RrIowa_0708 585646 - 586518 + | branched-chain amino acid aminotransferase RrIowa_0709 586704 - 587588 + | dihydrodipicolinate synthase RrIowa_0710 587585 - 588043 + | SsrA-binding protein TERM 515 588090 - 588130 + F 93 -11.4 -3.3907 | gap 1, opp_overlap 588086, overlap 588091 TTTGTTACATAGCTC GTTT-TATGTCATTCCCGC GAAA GCGGGAATGACATATAGAA TTACTTAGACTTTAG TERM 516 588091 - 588129 + F 100 -14.9 -2.6296 | gap 1, opp_overlap 588086, overlap 588090 TTGTTACATAGCTCG TTT-TATGTCATTCCCGC GAAA GCGGGAATGACATATAGA ATTACTTAGACTTTA RrIowa_0711 588175 - 588966 + | outer membrane protein RrIowa_0712 590077 - 589199 - | succinyl-CoA synthetase subunit alpha RrIowa_0713 591411 - 590251 - | succinyl-CoA synthetase subunit beta RrIowa_0714 591538 - 591443 - | hypothetical protein TERM 517 591486 - 591516 + g 75 -9.9 -2.73474 | opp_overlap 591492, overlap 591485 591492 CTTACTATGTCTTTA TCAAAAGTGCTAA ACTTA TTAGCACTATTGA CTTCTCCTTCTGCAA TERM 518 591510 - 591492 - G 78 -7.5 -4.25283 | opp_overlap 591492 591486 591485 ATGTCTTTATCAAAA GTGCTAA ACTTA TTAGCAC TATTGACTTCTCCTT RrIowa_0715 591828 - 591535 - | hypothetical protein RrIowa_0716 592069 - 591815 - | hypothetical protein RrIowa_0717 592387 - 592253 - | cytochrome b561 RrIowa_0718 592695 - 592432 - | cytochrome b561 TERM 519 592795 - 592759 - R 72 -4 -5.17576 | opp_overlap 592769, overlap 592762 592769 CAGGAATCTAAAAAA CAATAAAAAATACTAA AATTA TTAGTATTTTTAACTA GATCCCATGGGCAAG TERM 520 592792 - 592762 - R 73 -5.7 -4.67173 | opp_overlap 592769, overlap 592759 592769 GAATCTAAAAAACAA TAAAAAATACTAA AATTA TTAGTATTTTTAA CTAGATCCCATGGGC TERM 521 592785 - 592769 - R 85 -3.8 -5.80727 | opp_overlap 592769, overlap 592762 592759 AAAAACAATAAAAAA TACTAA AATTA TTAGTA TTTTTAACTAGATCC RrIowa_0719 594880 - 592850 - | acylamino-acid-releasing enzyme TERM 522 594369 - 594383 + g 75 -7.2 -4.15066 | TAAATCAGTTCTTTT TCTAGA GTA TCTAGA TTTAATTTGTAAATA RrIowa_0720 595603 - 594968 - | hypothetical protein TERM 523 595180 - 595164 - G 76 -2.9 -5.48825 | opp_overlap 595165, overlap 595165 GATGAGTCAAAAAAA TCACCAT AGG ACGGTGT TATTTTTTCAAATTC TERM 524 595626 - 595659 + r 70 -5.6 -4.2573 | opp_overlap 595626 595631 595647, overlap 595619 595618 TTATTTTTATTAAAA GATTATTTTTATAT TTTAAT ATAAAAAAATAATC TTTTAAAGTTATTTA TERM 525 595659 - 595626 - R 70 -5.6 -4.26076 | opp_overlap 595619 595618 595626, overlap 595631 595647 TTATTTTTATTAAAA GATTATTTTTATAT TTTAAT ATAAAAAAATAATC TTTTAAAGTTATTTA TERM 526 595870 - 595856 - R 71 -7.2 -3.72576 | opp_overlap 595855 595856 GGCTGTTGTACTAAA GCTTAA TTT TTAAGC GTTTTTAGTATAACG RrIowa_0721 596439 - 595927 - | hypothetical protein TERM 527 596511 - 596471 - R 70 -5.7 -4.24786 | opp_overlap 596477 596504, overlap 596474 596477 596504 CCCATAAGATATAAA TAACAAGATTATCAATAAC TTA ATTATTGATAATCTTTGCA TCAATGATATTAAAA TERM 528 596508 - 596474 - R 91 -9.6 -4.22858 | opp_overlap 596477 596504, overlap 596471 596477 596504 ATAAGATATAAATAA CAAGATTATCAATAAC TTA ATTATTGATAATCTTT GCATCAATGATATTA TERM 529 596477 - 596505 + r 85 -10.6 -3.67296 | opp_overlap 596474 596471 596477 596504, overlap 596504 AGATATAAATAACAA GATTATCAATAA CTTAA TTATTGATAATC TTTGCATCAATGATA TERM 530 596505 - 596477 - R 100 -11.3 -4.19887 | opp_overlap 596477 596504, overlap 596474 596471 596504 AGATATAAATAACAA GATTATCAATAAC TTA ATTATTGATAATC TTTGCATCAATGATA RrIowa_0722 596855 - 596628 - | hypothetical protein TERM 531 596989 - 597001 + r 81 -3.5 -5.54894 | opp_overlap 596977 596985 596989 596996 AAATATTAAAACAAT TTATT AAT AATAA TTTTTTTAATAAATT RrIowa_0723 597394 - 597032 - | ribosome-binding factor A RrIowa_0724 597825 - 597391 - | hypothetical protein TERM 532 597562 - 597540 - G 86 -8 -4.71828 | opp_overlap 597538 597536 597540 ATGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAGTTTTGTTAAA TERM 533 597540 - 597562 + g 70 -8 -3.18634 | opp_overlap 597540, overlap 597538 597536 ATGCCATTAAGAAAA TTATAAATAT CTC ATATTTATAA TATAGTTTTGTTAAA RrIowa_0725 597968 - 598489 + | hypothetical protein recR 598637 - 599242 + | recombination protein RecR RrIowa_0727 599557 - 599357 - | hypothetical protein RrIowa_0728 600060 - 599881 - | hypothetical protein RrIowa_0729 600362 - 600237 - | hypothetical protein RrIowa_0730 600549 - 600436 - | hypothetical protein TERM 534 600670 - 600682 + r 77 -4.9 -5.1963 | opp_overlap 600670 GTATTCAAAAAATAT TTCTA CTT TAGAA TTTTTATTAATTAAA RrIowa_0731 600926 - 600693 - | hypothetical protein TERM 535 601020 - 601065 + r 77 -8.5 -3.85704 | opp_overlap 601028 601060, overlap 601024 601028 GAAGACTTTTTTGAT TTCATATATGATGCCTAGTTA TTTT TAACAAGGCATCATACATTAG TTTAATGCTTAGTCA TERM 536 601024 - 601061 + r 93 -11.5 -3.59233 | opp_overlap 601028 601060, overlap 601020 601028 ACTTTTTTGATTTCA TATATGATGCCTAGTTA TTTT TAACAAGGCATCATACA TTAGTTTAATGCTTA TERM 537 601028 - 601057 + r 100 -12.3 -2.64134 | opp_overlap 601028, overlap 601024 601020 TTTTGATTTCATATA TGATGCCTAGTTA TTTT TAACAAGGCATCA TACATTAGTTTAATG TERM 538 601057 - 601028 - R 100 -12.3 -2.89564 | opp_overlap 601024 601020 601028 TTTTGATTTCATATA TGATGCCTAGTTA TTTT TAACAAGGCATCA TACATTAGTTTAATG RrIowa_0732 601873 - 601106 - | inorganic polyphosphate/ATP-NAD kinase TERM 539 601869 - 601881 + g 77 -4.9 -5.10526 | GCTATTTTATTTATA TTCAT TAT ATGAA TTTCTTTTTTAATAT TERM 540 603412 - 603394 - g 74 -2.3 -5.5112 | GTCATTAATAAAAAA GGACTGC TTGCT GCAAACC CAATGCTGTCTATGC RrIowa_0733 601960 - 603642 + | metal-dependent hydrolase TERM 541 603797 - 603772 - f 100 -10.7 -5.626 | opp_overlap 603772 TATTTGATAAAAAAA CCATATAAAAA CTTG TTTTTATATGG TTTTACTGGATTCCC TERM 542 603772 - 603797 + F 100 -10.7 -4.30978 | opp_overlap 603772 TATTTGATAAAAAAA CCATATAAAAA CTTG TTTTTATATGG TTTTACTGGATTCCC RrIowa_0734 603890 - 604906 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 543 604945 - 604931 - f 70 -5.8 -4.33755 | opp_overlap 604931 AGCAATACCAATAAA TATGAA AAT TTCATA TTAAATTAGACACCT RrIowa_0735 605092 - 606021 + | auxin efflux carrier family protein RrIowa_0736 606090 - 606962 + | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase TERM 544 607074 - 607099 + F 100 -9.3 -4.92314 | opp_overlap 607074 ATTTCATACAATAAA CATATAAAAAA ATTG TTTTTTATATG TTTTTCTGGATTCCT TERM 545 607099 - 607074 - f 100 -9.3 -4.39329 | opp_overlap 607074 ATTTCATACAATAAA CATATAAAAAA ATTG TTTTTTATATG TTTTTCTGGATTCCT RrIowa_0737 607164 - 608096 + | thioredoxin reductase RrIowa_0738 608317 - 608604 + | hypothetical protein RrIowa_0739 608666 - 608833 + | hypothetical protein RrIowa_0740 608983 - 609120 + | hypothetical protein TERM 546 610582 - 610564 - g 86 -10.4 -3.57144 | CCCGTTACCTGCAAA TGCAAAAG CAC CTTTTGCA GGACGTAAAGCTTCA RrIowa_0741 609245 - 610672 + | succinate-semialdehyde dehydrogenase (NADP+) RrIowa_0742 610913 - 611152 + | hypothetical protein RrIowa_0743 611145 - 611990 + | hypothetical protein TERM 547 612108 - 612142 + G 79 -9.4 -3.34895 | opp_overlap 612101 612113, overlap 612113 TAAATCCAGAACAGC AAAAAGCAGTTCTTCA CAC TGAAGGACCGCTTTTA TTGCTTGCAGGTGCA TERM 548 612137 - 612113 - g 100 -9.3 -4.90906 | opp_overlap 612113 612108, overlap 612101 CCAGAACAGCAAAAA GCAGTTCTTCA CAC TGAAGGACCGC TTTTATTGCTTGCAG TERM 549 612113 - 612137 + G 100 -9.3 -4.78572 | opp_overlap 612101 612113, overlap 612108 CCAGAACAGCAAAAA GCAGTTCTTCA CAC TGAAGGACCGC TTTTATTGCTTGCAG RrIowa_0744 612065 - 614026 + | DNA helicase II TERM 550 614262 - 614250 - g 75 -4.9 -4.90525 | overlap 614245 TAACCTTAAAGAAAA TGTTT CAG AAACA ACATTAGGTAACCAC RrIowa_0745 614092 - 614451 + | hypothetical protein RrIowa_0746 614517 - 614696 + | hypothetical protein TERM 551 614793 - 614782 - g 71 -3 -5.055 | CTAACTTTGAAAAAA GTAA TAGT TTAC ATATAGAAACGAAAA RrIowa_0747 614700 - 615005 + | hypothetical protein TERM 552 615815 - 615805 - g 80 -2.6 -5.69473 | TAGATTAGAAAAAAA TAAT AAA ATTA GTAAGCAATTAGAAC RrIowa_0748 615056 - 616408 + | hypothetical protein TERM 553 616499 - 616523 + T 93 -11.4 -3.48276 | overlap 616501 TAGATTTTTTATTGT CACCCCGTGG CGTGA CCACGGGGTC TTGTATCACCAGCCG TERM 554 616501 - 616521 + T 100 -14 -3.31726 | overlap 616499 GATTTTTTATTGTCA CCCCGTGG CGTGA CCACGGGG TCTTGTATCACCAGC RrIowa_0749 617616 - 616585 - | threonine dehydratase RrIowa_0750 617699 - 620038 + | ATP-dependent endopeptidase Lon RrIowa_0753 621720 - 621517 - | hypothetical protein RrIowa_0754 622116 - 621727 - | hypothetical protein TERM 555 623280 - 623268 - H 75 -4.9 -5.07652 | CCTCTCAAAAGAAAA TTCAA CTC TTGAA ATCATTTGAGTATAA RrIowa_0757 623560 - 623868 + | hypothetical protein TERM 556 623959 - 623920 - f 70 -6 -4.33928 | gap 1, opp_overlap 623920 623925 623927, overlap 623925 TACTCTAAATATAAA TTAATTGTATAGGTGTTAC TTA GTAACGCCTATAT-ATTAA TTATTTCAGATTATA TERM 557 623920 - 623959 + F 93 -10.4 -3.97689 | gap 1, opp_overlap 623920 623925, overlap 623925 623927 TACTCTAAATATAAA TTAATTGTATAGGTGTTAC TTA GTAACGCCTATAT-ATTAA TTATTTCAGATTATA TERM 558 623925 - 623955 + F 100 -12.8 -3.62054 | opp_overlap 623925 623920, overlap 623920 623927 TAAATATAAATTAAT TGTATAGGTGTTAC TTA GTAACGCCTATATA TTAATTATTTCAGAT TERM 559 623927 - 623953 + F 100 -13.2 -3.38135 | opp_overlap 623925 623920, overlap 623925 623920 AATATAAATTAATTG TATAGGTGTTAC TTA GTAACGCCTATA TATTAATTATTTCAG TERM 560 624519 - 624540 + G 71 -6.7 -4.21631 | CGTATCAATATAGTT TATTATCGT AAAG ACGGTAATA TTTCTTGGGTAGATT RrIowa_0758 623985 - 624563 + | ribosome-associated factor Y RrIowa_0761 625976 - 625110 - | methenyltetrahydrofolate cyclohydrolase RrIowa_0762 627135 - 626113 - | ferredoxin--NAD(P)(+) reductase RrIowa_0763 627357 - 627259 - | hypothetical protein RrIowa_0764 627668 - 628156 + | protein U precursor RrIowa_0765 628337 - 628576 + | hypothetical protein RrIowa_0766 628608 - 628715 + | hypothetical protein TERM 561 631093 - 631130 + F 100 -12.9 -4.40963 | overlap 631090 631094 GACTAAAAACGCTCC GTTGTCATACCGTGG CTTGACCA CCACGGTATGACAAA TTCTTTTTAAGCAAT TERM 562 631094 - 631129 + F 100 -16.4 -3.23855 | overlap 631093 631090 ACTAAAAACGCTCCG TTGTCATACCGTGG CTTGACCA CCACGGTATGACAA ATTCTTTTTAAGCAA RrIowa_0773 631179 - 631589 + | protein U precursor RrIowa_0774 631820 - 632137 + | hypothetical protein RrIowa_0775 632196 - 632327 + | hypothetical protein TERM 563 634388 - 634373 - g 72 -2.6 -5.29445 | gap 1, overlap 634367 634375 TCCGAAGAAGAAAAA CAGGTTT TCA AAACC-G CTTACGAAATTGATC TERM 564 634387 - 634375 - g 71 -6.3 -4.27297 | overlap 634367 634373 CGAAGAAGAAAAACA GGTTT TCA AAACC GCTTACGAAATTGAT RrIowa_0776 632867 - 634690 + | ribonucleotide-diphosphate reductase subunit alpha RrIowa_0777 634764 - 634862 + | hypothetical protein TERM 565 634944 - 634934 - f 81 -8.2 -4.2349 | opp_overlap 634933 TGTTGAGATGCAAAA CGGC TAT GCCG ATGCTTCTTTATCAA RrIowa_0778 635036 - 635155 + | hypothetical protein RrIowa_0779 635520 - 636506 + | ribonucleotide-diphosphate reductase subunit beta TERM 566 638372 - 638362 - g 73 -4 -5.05782 | ATCTAGTTCAAAAAA CAAA TTA TTTG GAAGGGCAATTGCCG TERM 567 638666 - 638645 - g 71 -8.9 -2.96237 | opp_overlap 638648, overlap 638644 638648 TAATTTTAAAAATAT TAATTTAGC AGAG GCTAAATTA CCTGATAATTTAATG RrIowa_0780 636654 - 639503 + | hypothetical protein RrIowa_0784 642692 - 641601 - | tRNA delta(2)-isopentenylpyrophosphate transferase RrIowa_0785 643154 - 642828 - | hypothetical protein RrIowa_0786 644613 - 643225 - | phosphomannomutase TERM 568 643937 - 643954 + g 70 -7 -3.89346 | opp_overlap 643936 ACCACTTTTATTAAC TCCTGC AAATTA GCAGGA TTTGTAGGATCAGGA TERM 569 644683 - 644665 - R 88 -8.8 -4.38712 | opp_overlap 644641, overlap 644640 GTCATTCCTACAAAA GAGCCTTG TTG CATGGCTC GGAAAACCTACTCGA RrIowa_0787 645506 - 644784 - | ABC transporter ATP-binding protein RrIowa_0788 646105 - 645689 - | hypothetical protein RrIowa_0789 646200 - 646123 - | hypothetical protein RrIowa_0790 646840 - 646244 - | hypothetical protein RrIowa_0791 647805 - 646846 - | arabinose-5-phosphate isomerase TERM 570 647079 - 647089 + g 79 -5.4 -5.10064 | CGGTTATAATTCCCA CCAA ATT TTGG TTTTTATCTGTTACA RrIowa_0792 647986 - 647810 - | hypothetical protein TERM 571 647896 - 647923 + g 79 -10.6 -2.80113 | gap 1, overlap 647920 ATACCCGAACCGTCA TTG-CGAGCAGCC GTA GGCTGCACGGCAA TCTCATGAAATAATA RrIowa_0793 650251 - 648005 - | polynucleotide phosphorylase/polyadenylase TERM 572 649726 - 649737 + g 70 -4.4 -4.77036 | opp_overlap 649726 CTGCAACTACTAAAT CAAG CTGA CTTG TTTTTAATAATGCAA RrIowa_0794 650674 - 650399 - | 30S ribosomal protein S15 RrIowa_0795 651747 - 650710 - | tRNA pseudouridine synthase B TERM 573 651082 - 651094 + g 77 -5.5 -4.84363 | TATCTTTATACTTTT TGCCT CTA GGGCA TTTTTGGTAATTTCG TERM 574 651652 - 651671 + g 83 -2.2 -5.90981 | gap 1, overlap 651655 AGTACCGGCATGTCC TATCTTGGT TTT ACCGAG-TA TTTTTTTTACTATGC TERM 575 651655 - 651669 + g 76 -6.4 -4.59226 | overlap 651652 ACCGGCATGTCCTAT CTTGGT TTT ACCGAG TATTTTTTTTACTAT TERM 576 652035 - 652047 + G 83 -7.7 -4.7416 | TACTATGATCGGTGC CGAGA TTA TCTCG TTTTTGAAGTTTTGG TERM 577 653169 - 653155 - g 77 -3.5 -5.48028 | GAAATAAAAATAAAA GGCAA AGCTG CTGCC GACGTGATAGGTACA RrIowa_0796 651832 - 653367 + | ADP,ATP carrier protein TERM 578 654111 - 654097 - g 75 -8.6 -3.38118 | AGAATTTATTGATAA GGCTTT AGA AAAGCC TGAGCTTAAAAAGAA RrIowa_0797 653648 - 656722 + | antigenic heat-stable 120 kDa protein RrIowa_0798 657218 - 656841 - | transcriptional regulator RrIowa_0799 657736 - 658563 + | ribonuclease BN RrIowa_0801 659547 - 658714 - | glutamine synthetase RrIowa_0800 659546 - 660268 + | putative cytoplasmic protein RrIowa_0802 660486 - 660845 + | peptide deformylase RrIowa_0803 661230 - 661045 - | hypothetical protein RrIowa_0804 661248 - 661454 + | hypothetical protein RrIowa_0807 664367 - 662559 - | hypothetical protein TERM 579 664500 - 664464 - R 88 -7.6 -5.00884 | opp_overlap 664474, overlap 664474 ACGGGGTCCAAAAAA CAATAAAAAATACTAA TAATT TTAGTATTTTTAACTG GATCCCGTGGTCAAG TERM 580 664490 - 664474 - R 85 -3.8 -5.80727 | opp_overlap 664474, overlap 664464 AAAAACAATAAAAAA TACTAA TAATT TTAGTA TTTTTAACTGGATCC RrIowa_0808 667278 - 664630 - | pyruvate phosphate dikinase TERM 581 664905 - 664875 - G 83 -7 -4.7173 | opp_overlap 664865 GATCAGATTCAAAAA TCTTTTCTTCTAAA TAA TATGGAAGAAAAGA GGCAATATCATCTCT TERM 582 666210 - 666221 + g 72 -5.8 -4.42748 | opp_overlap 666210 666209 CGGCAATATTAATAG CAGC GATG GCTG TTCTTTTTGCAGTAC TERM 583 666459 - 666448 - G 70 -4.4 -4.75372 | opp_overlap 666448 AGCATTTATTAAAAA CTCT CCAA AGAG CTTTTTTTCTCCTGT TERM 584 667891 - 667873 - H 75 -7.4 -4.14392 | overlap 667877 TGGTAAGGGTGAAAA GGTACGGT AAG AGCGTACC GGTAAGTTGGTAACA RrIowa_0809 668196 - 668864 + | glutathione S-transferase family protein RrIowa_0810 669728 - 668976 - | biotin apo-protein ligase-related protein TERM 585 669523 - 669533 + g 77 -5.4 -4.88736 | ATATTAGCATTTCCT TTGC CTT GCAA TTTTTGTACATAGTA bioY 669804 - 670346 + | hypothetical protein TERM 586 670420 - 670440 + F 77 -7.7 -4.11295 | GAGAATCCGCTACTT TTAAGCTTT CTA AAAGCTTGA TTTATCTCGCTTTAC RrIowa_0812 670563 - 671843 + | dihydrofolate synthase RrIowa_0813 672016 - 672645 + | superoxide dismutase RrIowa_0814 672650 - 672811 + | hypothetical protein TERM 587 674452 - 674497 + F 78 -6.9 -4.57569 | overlap 674453 674453 TAGGAGGCGAGTTAG GTGTTTTGATGTCATTCCTGC GAAA GCGGGAATGACATCAAGCGGG TTTTTCAAGCCATGC TERM 588 674453 - 674495 + F 100 -13.7 -2.60211 | gap 1, overlap 674453 674452 AGGAGGCGAGTTAGG TGTTTTGATGTCATTCCTGC GAAA GCGGGAATGACATCAAG-CG GGTTTTTCAAGCCAT TERM 589 674453 - 674496 + F 83 -10.4 -3.3422 | overlap 674452 674453 AGGAGGCGAGTTAGG TGTTTTGATGTCATTCCTGC GAAA GCGGGAATGACATCAAGCGG GTTTTTCAAGCCATG RrIowa_0818 674555 - 675355 + | biotin operon repressor RrIowa_0819 675423 - 675611 + | hypothetical protein RrIowa_0820 675805 - 676317 + | putative cytoplasmic protein RrIowa_0821 676314 - 676583 + | hypothetical protein RrIowa_0822 676612 - 676782 + | phage protein RrIowa_0823 676786 - 676959 + | hypothetical protein RrIowa_0824 676946 - 677275 + | hypothetical protein TERM 590 677616 - 677594 - g 77 -3.4 -5.40004 | overlap 677586 677595 677596 TACGAAAGCAAAAAA CGTTTGCATG AAG CACGCAAAAA ACAAAAAATCATCGT RrIowa_0825 677426 - 677899 + | translation initiation factor IF-3 TERM 591 679024 - 679007 - g 76 -9.9 -2.8355 | opp_overlap 679023, overlap 679006 AGATAATAAATTAAC CCCTGAA GAAT TTCAGGG TGGAGGGTTTACCAT RrIowa_0826 678045 - 679283 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 592 679349 - 679363 + F 74 -8.6 -3.31263 | overlap 679333 TGAGATTGCTTTGTT GCAACT TTC AGTTGC TTCTCGCAATAACGT RrIowa_0827 679416 - 680483 + | peptide chain release factor 1 TERM 593 680567 - 680597 + F 71 -5.7 -4.47707 | opp_overlap 680574, overlap 680574 GACCACAGGATCCAG TTAAAAATACTAA CATTA TTAGTATTTTTTA TTATTTTTAATGACG TERM 594 680574 - 680590 + F 85 -3.8 -5.80727 | opp_overlap 680574, overlap 680567 GGATCCAGTTAAAAA TACTAA CATTA TTAGTA TTTTTTATTATTTTT TERM 595 682329 - 682317 - g 91 -4.9 -5.79595 | CCCTAAAACAAAAAA TATTG CTG CAATA GGAACGTTAAAAACT recJ 680644 - 682407 + | hypothetical protein RrIowa_0829 682451 - 683773 + | methyltransferase RrIowa_0830 684158 - 685534 + | transcription termination factor Rho sppA.2 685660 - 686574 + | signal peptide peptidase TERM 596 686793 - 686769 - g 74 -5.2 -4.81249 | CCTGAAAGCGAAAAA TTCTATAATA CGGTT TATTACAGAA TGCCTAAAAATTTAT RrIowa_0832 686577 - 686819 + | hypothetical protein RrIowa_0833 686826 - 687026 + | hypothetical protein RrIowa_0834 687094 - 687216 + | hypothetical protein RrIowa_0835 687389 - 687580 + | hypothetical protein TERM 597 687759 - 687735 - g 77 -8.7 -3.694 | overlap 687740 ATCGAAAATAATGAA TATAAGTGCAA AAC TTGCACATATA AATAAAGAAAGATTT TERM 598 687754 - 687740 - g 79 -8.6 -3.80745 | overlap 687735 AAATAATGAATATAA GTGCAA AAC TTGCAC ATATAAATAAAGAAA RrIowa_0836 687583 - 688329 + | putative cytoplasmic protein RrIowa_0837 688625 - 688413 - | hypothetical protein RrIowa_0838 688941 - 688606 - | hypothetical protein RrIowa_0839 689217 - 689465 + | hypothetical protein RrIowa_0840 689668 - 689991 + | putative cytoplasmic protein RrIowa_0842 691135 - 690143 - | tryptophanyl-tRNA synthetase TERM 599 691285 - 691302 + G 70 -4.2 -4.70659 | opp_overlap 691301 ATTTTTTTTCTTATA TGTTAC ATACCA GTAACA TTTTTCAATGTCAAC RrIowa_0843 691213 - 691938 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase RrIowa_0844 691991 - 692443 + | hypothetical protein RrIowa_0845 692770 - 692642 - | hypothetical protein TERM 600 692756 - 692774 + g 76 -7.5 -3.98484 | AGGAATCTTAATATG TGGTTTG AAAGG CAAACCA TTTATACATTGAGTT RrIowa_0846 692907 - 692788 - | hypothetical protein RrIowa_0847 693149 - 693868 + | alpha/beta hydrolase RrIowa_0848 694049 - 693933 - | hypothetical protein TERM 601 693981 - 693995 + g 85 -4.3 -5.60993 | opp_overlap 693981 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCACCAC TERM 602 693995 - 693981 - G 70 -4.3 -4.77157 | opp_overlap 693981 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCACCAC RrIowa_0849 695102 - 694098 - | TPR repeat-containing protein RrIowa_0850 695850 - 695095 - | hypothetical protein RrIowa_0851 696508 - 695834 - | uroporphyrinogen-III synthase RrIowa_0852 697127 - 696486 - | amino acid transporter LysE TERM 603 696658 - 696642 - G 83 -2.3 -5.95539 | overlap 696643 696645 TGCTAAAGAAAAAAA CCATATC CAA GATATAA GTATGCAAGTTAAGG RrIowa_0853 697250 - 697128 - | amino acid transporter LysE ampG.2 699046 - 697715 - | AmpG RrIowa_0855 699457 - 699212 - | putative cytoplasmic protein RrIowa_0856 699727 - 699879 + | lipopolysaccharide 1,2-glucosyltransferase TERM 604 700896 - 700917 + G 70 -4.6 -4.65263 | AATAATTGCTATGCT TCTATTTA GAATAA TAAATAGA TTTATTTTAACAGAT TERM 605 701000 - 700984 - g 70 -2.3 -5.24291 | opp_overlap 700994 AAAATGAAAACAAAA CTTTC GGTAATT GAAAG TATCAAATTAGTAAT RrIowa_0857 700162 - 701667 + | ADP,ATP carrier protein TERM 606 701690 - 701717 + F 76 -10 -2.80113 | gap 1 TGCAAGCGGGCATTG TTG-CGTGCAGTC GTA GACTGCATGGCAA TCTCATGCAATAATA RrIowa_0858 701839 - 703497 + | hypothetical protein TERM 607 704493 - 704481 - g 73 -4.1 -4.9448 | AGTTATTAAATAAAA TTCCG GTT CAGAA TATTTATAAAGACTA RrIowa_0859 703484 - 704551 + | decaprenyl diphosphate synthase RrIowa_0863 706766 - 704928 - | Xaa-Pro aminopeptidase TERM 608 705419 - 705429 + g 83 -6.8 -4.93898 | GTCCTTTAAGTACTT GCGT ATA ACGC TTTTTCTGCTCATCT TERM 609 706806 - 706836 + r 82 -7.1 -4.73105 | opp_overlap 706814, overlap 706814 GACGAAGCAATCCAG TTAAAAAATTCTG ATTTA CAGAATTTTTTTA TTATTTTTTCTGGAT TERM 610 706828 - 706814 - R 72 -4.3 -5.10497 | opp_overlap 706806 706814 AATCCAGTTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT TERM 611 706814 - 706828 + r 91 -4.3 -6.04419 | opp_overlap 706814, overlap 706806 AATCCAGTTAAAAAA TTCTG ATTTA CAGAA TTTTTTTATTATTTT RrIowa_0864 708191 - 706908 - | amino acid permease TERM 612 708052 - 708035 - G 82 -8.5 -4.02581 | GGGTAGAAAATACAA GTGCTAT ACTC ATAGCAC CGAATAATGAAAGTA TERM 613 708317 - 708291 - H 74 -5.2 -4.87803 | overlap 708293 GATTTCTAAACAAAA GATTGATAGCTT TTT AAGCTATCAAAA ATAATCTTAGGAGTT TERM 614 708315 - 708293 - H 100 -12.2 -4.05678 | overlap 708291 TTTCTAAACAAAAGA TTGATAGCTT TTT AAGCTATCAA AAATAATCTTAGGAG RrIowa_0865 708336 - 708515 + | lysozyme TERM 615 709221 - 709211 - T 71 -6.8 -3.97947 | TTTATTGATTATAAA GCGT TAC ACGC TAAAAGATTTGCCGC RrIowa_0866 709546 - 709214 - | HesB protein family protein iscU 709945 - 709550 - | scaffold protein TERM 616 710085 - 710058 - R 78 -9.2 -3.24365 | gap 1, overlap 710056 GGATATTTGACAAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGCCGATATTCTCAA RrIowa_0868 711329 - 710097 - | cysteine desulfurase TERM 617 711415 - 711366 - R 77 -8.8 -3.63627 | gap 2, overlap 711369 TTGGTATAGTTTAAA CAG-TC-ATCGATGTCATTCCCGC TTTC GCGGGAATGACATAAACCGAGCCG TGCAACAACGTAGCT TERM 618 711411 - 711369 - R 85 -11.5 -2.63585 | gap 1, overlap 711366 GTATAGTTTAAACAG TC-ATCGATGTCATTCCCGC TTTC GCGGGAATGACATAAACCGA GCCGTGCAACAACGT RrIowa_0869 712550 - 711432 - | cysteine desulfhydrase TERM 619 711856 - 711875 + g 70 -4.3 -4.7373 | ATTGCTAAAACATTT TCAGTGC CTGAGC GTACTGA TTTTTCCTGCCCTCC RrIowa_0870 712966 - 712547 - | Rrf2 family protein RrIowa_0871 713643 - 713422 - | hypothetical protein RrIowa_0874 715863 - 714991 - | hypothetical protein RrIowa_0875 716030 - 715875 - | hypothetical protein RrIowa_0876 716315 - 716157 - | putative cytoplasmic protein RrIowa_0877 716488 - 716724 + | hypothetical protein TERM 620 717044 - 717022 - f 76 -9.2 -3.16553 | overlap 717012 717020 ATAACGATGAACACA TCCCCCAACA GCC TGTTGGAGAA ATTCCCTGGGGATAT RrIowa_0878 717070 - 717402 + | putative cytoplasmic protein RrIowa_0879 717597 - 718046 + | acetyltransferase TERM 621 718491 - 718503 + T 70 -6.3 -4.1891 | opp_overlap 718490 718491 AAGTCATTAACGAAT TTACC AAA GGTAA TTTATCTTGAGGAAA RrIowa_0882 719630 - 718602 - | isopentenyl pyrophosphate isomerase RrIowa_0883 720026 - 719910 - | hypothetical protein TERM 622 720072 - 720086 + r 72 -2.8 -5.40072 | CCATAGTTTTATATG TGGC ATTTCTA GCCA TTTTTTTAAAAAAAA clpP 721319 - 720669 - | ATP-dependent Clp protease proteolytic subunit TERM 623 721147 - 721131 - G 71 -6.7 -4.20367 | opp_overlap 721134, overlap 721134 TGCTTCAAGAAACAA TAATTGT GCA ACAATTA AGTTTGCCATATGAT RrIowa_0886 723140 - 721434 - | 30S ribosomal protein S1 RrIowa_0887 724066 - 723407 - | cytidylate kinase RrIowa_0888 724466 - 724188 - | transcriptional regulator RrIowa_0890 724893 - 725231 + | hypothetical protein RrIowa_0891 725505 - 725684 + | hypothetical protein TERM 624 725978 - 725990 + F 72 -7.7 -3.54503 | GAGCTTTAACTTCTC GTTGC TAC GCAAC TTCATTATATCTTCC TERM 625 726003 - 726025 + F 100 -9.9 -4.52589 | gap 1, opp_overlap 726018, overlap 726005 AACTTCATTATATCT TCCCTTCGCC TAAA GGCGA-GGGA TTTTATATCCCCCGA TERM 626 726005 - 726024 + F 93 -11.4 -3.31232 | opp_overlap 726018, overlap 726003 CTTCATTATATCTTC CCTTCGCC TAAA GGCGAGGG ATTTTATATCCCCCG RrIowa_0892 726566 - 726721 + | hypothetical protein RrIowa_0893 726797 - 727399 + | hypothetical protein RrIowa_0894 727529 - 727783 + | hypothetical protein RrIowa_0895 728041 - 727847 - | hypothetical protein RrIowa_0896 728252 - 728052 - | ATPase RrIowa_0897 728266 - 728424 + | hypothetical protein RrIowa_0898 730074 - 729019 - | porphobilinogen deaminase TERM 627 729066 - 729077 + g 76 -4.4 -5.1244 | CGGCTTTTATGCCTG CTTC TGTT GAAG TTTTTATATTGGTAG RrIowa_0899 731150 - 730071 - | muramoyltetrapeptide carboxypeptidase TERM 628 730382 - 730414 + g 80 -6.4 -4.73105 | gap 1, opp_overlap 730402 CAAGCAATAGAATTT TATTGTCATCCCCGT GGAA ACGGGGATC-CAGTA TTATTTTTTCTGGAT TERM 629 730434 - 730402 - G 71 -7.7 -3.53444 | opp_overlap 730382 TCATCCCCGTGGAAA CGGGGATCCAGTA TTATTTT TTCTGGATTCCCG CTTCCGCGGGAATGA TERM 630 731035 - 731047 + g 77 -3.5 -5.55664 | ATAAAATCTTGTTGT TTATT AAA AATAA TTTTTTTCATAATAA TERM 631 731092 - 731063 - G 73 -7.9 -3.78934 | gap 1, overlap 731068 TTTTTTTCATAATAA TGTAATACCGTGGC CCT GCCACGGTATC-CG GTAAAAATGTTAAAA TERM 632 731088 - 731068 - G 100 -15.5 -3.31443 | overlap 731063 TTCATAATAATGTAA TACCGTGGC CCT GCCACGGTA TCCGGTAAAAATGTT resE.1 731441 - 731313 - | sensor protein resE.2 731893 - 731495 - | sensor protein TERM 633 731574 - 731542 - G 100 -15.3 -4.24948 | opp_overlap 731549 731552, overlap 731549 GGATCACAGTTAAAA TTGAAAAGAATATAA TTA TTATATTCTTTTCAA TATCAGATACAAAAT TERM 634 731549 - 731567 + g 78 -7.6 -4.23758 | opp_overlap 731542 731549, overlap 731552 AGTTAAAATTGAAAA GAATATAA TTA TTATATTC TTTTCAATATCAGAT TERM 635 731567 - 731549 - G 81 -7.6 -4.43272 | opp_overlap 731549 731552, overlap 731542 AGTTAAAATTGAAAA GAATATAA TTA TTATATTC TTTTCAATATCAGAT RrIowa_0904 734504 - 733899 - | hypothetical protein TERM 636 734083 - 734098 + g 70 -4 -4.84017 | ACATCAGGTTTTGTA TGCGTA TTTT TATGCA TTTTTCTAAGAAGTT RrIowa_0905 734860 - 734522 - | hypothetical protein RrIowa_0906 736173 - 735166 - | aminomethyltransferase family protein RrIowa_0907 736247 - 737077 + | hypothetical protein RrIowa_0908 737087 - 737932 + | ribonuclease D TERM 637 737994 - 737983 - T 74 -3 -5.49569 | TATGAATAGAAAAAA TTAG CCAA CTAA TGTAACTTATATCTC RrIowa_0909 738199 - 738062 - | hypothetical protein RrIowa_0910 738886 - 738296 - | 5-formyltetrahydrofolate cyclo-ligase TERM 638 738886 - 738906 + g 83 -11.2 -2.90723 | GCTTCATCTCTGTCA TCCCACGA CTTGT TCGTGGGA TCTAGTTACAAATAC TERM 639 738935 - 738919 - H 71 -6.7 -3.92869 | opp_overlap 738919 738908 GGATCTAGTTACAAA TACTAAT ATT ATTAGTA TTGTGAGTGGTTTTA RrIowa_0911 738976 - 739101 + | hypothetical protein RrIowa_0912 740488 - 739109 - | dihydrolipoamide dehydrogenase TERM 640 740523 - 740550 + r 78 -9.2 -3.24365 | gap 1, overlap 740521 ATTGTTGGATCGTCA TTGCAA-GCAGCC CTA GGCTGCGTGGCAA TCTTGTCAAATATCC bioC 741321 - 740641 - | biotin synthesis protein RrIowa_0914 741847 - 741392 - | hypothetical protein TERM 641 741921 - 741931 + r 72 -2.6 -5.48028 | GGAATTATATACTTG TATA ACC TATA TTTTCTTTTTATTTA RrIowa_0915 742174 - 741944 - | DNA adenine methylase RrIowa_0916 742714 - 742496 - | hypothetical protein RrIowa_0917 743396 - 742695 - | hypothetical protein RrIowa_0918 744188 - 743703 - | hypothetical protein RrIowa_0919 745035 - 744193 - | transglycosylase SLT family protein TERM 642 744943 - 744957 + g 91 -4.3 -5.77632 | opp_overlap 744943 CAGTCCAGTAAACAA TTCTG ATTTA CAGAA TTTTTTTATCGTTTT TERM 643 745149 - 745133 - R 70 -8.1 -3.19522 | GCATGTAAGAGGTAA GGATTTA ATC TAAATCC CAAGCAGCATCATTA RrIowa_0920 745589 - 745137 - | hypothetical protein TERM 644 745547 - 745559 + g 71 -3.4 -5.09204 | opp_overlap 745547 AATCATCCTCAGATA GATC AATTA GATC TTTTTCTTGCAATAT RrIowa_0921 745799 - 745605 - | hypothetical protein RrIowa_0922 746227 - 746045 - | hypothetical protein TERM 645 746284 - 746272 - H 75 -5.5 -4.71061 | opp_overlap 746272, overlap 746262 ATTTATAGTTAAAAA CCACG AAA CATGG TATTTTTTAAAAATG RrIowa_0923 746537 - 746662 + | 50S ribosomal protein L36 TERM 646 747205 - 747192 - g 79 -4.5 -5.21236 | overlap 747193 AACCGATAATAAAAA CCGCA CTGC TGCAG AAGTACGCTCTAGTT RrIowa_0924 746743 - 747630 + | hypothetical protein RrIowa_0925 747627 - 748373 + | UDP-N-acetylglucosamine pyrophosphorylase TERM 647 748472 - 748504 + T 70 -3.6 -5.06451 | opp_overlap 748476, overlap 748476 AACCGGGAATCCAGT AAAACCTATAAAAA ACTTG TTGTTATAGGTTTA TTTTTTGGGATCCTC TERM 648 748476 - 748500 + T 72 -4.4 -5.05153 | opp_overlap 748476, overlap 748472 GGGAATCCAGTAAAA CCTATAAAAA ACTTG TTGTTATAGG TTTATTTTTTGGGAT RrIowa_0927 749074 - 748952 - | putative cytoplasmic protein RrIowa_0928 749515 - 749640 + | hypothetical protein RrIowa_0929 749769 - 750038 + | hypothetical protein RrIowa_0930 750240 - 750341 + | hypothetical protein RrIowa_0931 751168 - 750926 - | hypothetical protein RrIowa_0932 751244 - 751149 - | hypothetical protein mazG 751539 - 751231 - | hypothetical protein TERM 649 751322 - 751337 + g 71 -3.3 -5.16841 | AGATTTAGCAGGTTA TGCTT TTTGGT AAGCA TTTTTATTGCTCTCA RrIowa_0934 751989 - 751669 - | hypothetical protein RrIowa_0935 752025 - 752189 + | hypothetical protein RrIowa_0936 752279 - 752686 + | hypothetical protein RrIowa_0937 752944 - 753096 + | hypothetical protein RrIowa_0938 753150 - 753344 + | hypothetical protein TERM 650 754103 - 754123 + T 77 -7.7 -4.17523 | overlap 754122 TATTTGCCCCAGCAT CTAGTAATT TAA AATTACTGG TTTTCAACCTTATTT RrIowa_0941 754501 - 754355 - | ATP-binding protein RrIowa_0942 754765 - 754676 - | ATP-binding protein TERM 651 756024 - 756011 - g 76 -3.9 -5.28942 | opp_overlap 756017 756023, overlap 756017 GATCCCAAATAAAAA TAGAA TTAT TTCTA ATATCATTATTTTAC TERM 652 757074 - 757086 + G 83 -6.3 -5.00616 | overlap 757060 CTTACAGGATTTTTC GGTAA ATA TTACC TTTTTTACCAAGCAA TERM 653 757148 - 757160 + G 77 -5.5 -4.90381 | overlap 757145 757157 TGGTATTTTTACCAG CGTAG TTG CTGCG TTTTATTATCTTAAA RrIowa_0943 755928 - 757304 + | NADH dehydrogenase subunit N RrIowa_0944 758832 - 757291 - | hypothetical protein TERM 654 757727 - 757737 + g 70 -4 -4.95806 | GTAGTAATTTTATTT CTTA ATT TAAG TTTTTGTCCTCCTTT RrIowa_0945 759922 - 758897 - | delta-aminolevulinic acid dehydratase RrIowa_0946 760386 - 760162 - | hypothetical protein RrIowa_0947 760448 - 760543 + | hypothetical protein RrIowa_0948 760741 - 761019 + | hypothetical protein RrIowa_0949 763051 - 761105 - | primosome assembly protein PriA TERM 655 762057 - 762071 + g 71 -8.6 -3.07816 | AAATTACCTTTGATA GCTTCT ATA AGAAGC TTGGATAAATAGGAA TERM 656 763151 - 763128 - g 72 -4.7 -4.71791 | AGATGAATAAAGAAA CAAAAATTG TTATAG CAATTTCTG GAGCTTCAGGCACAA TERM 657 763558 - 763572 + G 88 -7 -4.91109 | CGGCGGCATTATATC GCCGCC CGT GCCGGC TTTTTATAATAACCC RrIowa_0950 763115 - 763690 + | aromatic acid decarboxylase RrIowa_0951 764054 - 763782 - | hypothetical protein TERM 658 763931 - 763917 - G 70 -4.3 -4.77157 | opp_overlap 763917 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCACCAC TERM 659 763917 - 763931 + g 85 -4.3 -5.60993 | opp_overlap 763917 GCAATCCAGTAAAAA TTCTG ATTTA CAGAA TTTTTTTATCACCAC RrIowa_0952 764057 - 765541 + | replicative DNA helicase TERM 660 765603 - 765648 + T 71 -7.7 -3.41581 | gap 1, opp_overlap 765598, overlap 765612 765616 TGCGAGCGAACGTTA GTGAGCGTGGCAATCTCAGGAA TTT TTCCTGAGATTGCTTAG-TCAG TTACTTCGTACCTTC TERM 661 765612 - 765640 + T 100 -19.1 -3.23598 | opp_overlap 765598, overlap 765603 765616 ACGTTAGTGAGCGTG GCAATCTCAGGAA TTT TTCCTGAGATTGC TTAGTCAGTTACTTC TERM 662 765616 - 765636 + T 100 -12.7 -3.41581 | opp_overlap 765598, overlap 765612 765603 TAGTGAGCGTGGCAA TCTCAGGAA TTT TTCCTGAGA TTGCTTAGTCAGTTA TERM 663 765672 - 765684 + T 76 -2.7 -5.61277 | TACCTTCCTCGCAAT GATGA TGT TTATC TTTTATTTTTTTCTG RrIowa_0953 765910 - 765701 - | hypothetical protein RrIowa_0957 767014 - 766910 - | tyrosine-specific transport protein TERM 664 767176 - 767204 + H 74 -7.8 -3.81256 | opp_overlap 767170 767176 767178 767182, overlap 767163 GGTATAGTATAATTA TATTAATAATTT ATGTA AAATTATTAATA TTGCTTTTTAAGGGT RrIowa_0958 767395 - 768087 + | ribosomal large subunit pseudouridine synthase B TERM 665 769143 - 769132 - g 82 -3 -5.75822 | opp_overlap 769132 GAGAAAGCAAAAAAA TCTT TCAG AAGA TTTAAATATAGTTCC TERM 666 769336 - 769322 - g 71 -8.6 -3.04398 | overlap 769321 GCCGTTTTTCAAAAT GTTACG GCT CGTAAC GCAGGATTTCTTTTT TERM 667 770013 - 770002 - g 70 -4.4 -4.67234 | AGCTAACTTTAAAAA TGCA ATTA TGCA GCGTGCCGATCTTAC TERM 668 770959 - 770945 - g 73 -8.6 -3.19293 | overlap 770954 AAGCCTAACACTCAA GGCAAA GGA TTTGCC ACAAAAATAAAAGAC RrIowa_0959 768134 - 771013 + | hypothetical protein RrIowa_0960 771018 - 771755 + | methyltransferase TERM 669 771767 - 771786 + F 86 -5.2 -5.62288 | opp_overlap 771767 771762 GTAAAACATATAAAA TATAAAAA CTTG TTTTTATA TTTTTATTTTATTAA TERM 670 771786 - 771767 - f 72 -5.2 -4.78933 | opp_overlap 771767, overlap 771762 GTAAAACATATAAAA TATAAAAA CTTG TTTTTATA TTTTTATTTTATTAA TERM 671 773107 - 773096 - g 76 -3.6 -5.38549 | GTGAAATAAGAAAAA CCGC AAAA GCAG AAACAAGAATAAAAG radA 771901 - 773235 + | DNA repair protein RadA RrIowa_0962 773232 - 773546 + | hypothetical protein TERM 672 773582 - 773596 + F 86 -7.2 -5.18357 | opp_overlap 773574 773582 AAATAATTAAAAAAA TGCTAA AAA TTAGCA TTTTTTACTGGATTG TERM 673 773596 - 773582 - f 95 -7.2 -5.73672 | opp_overlap 773582, overlap 773574 AAATAATTAAAAAAA TGCTAA AAA TTAGCA TTTTTTACTGGATTG recO 773668 - 774381 + | DNA repair protein RecO TERM 674 774450 - 774421 - f 78 -10.3 -2.79796 | opp_overlap 774421 774423 774424, overlap 774423 TCTTATTTTATGATA TACTTACTTAAGT AATT ACTTAAATAAGTA TGTAATATGACTAGA TERM 675 774591 - 774581 - g 74 -5.4 -4.83269 | ATAGCACAGGAAAAA GCAT TAA ATGC AGAATCAATAAAAAT RrIowa_0964 774533 - 774682 + | hypothetical protein TERM 676 774774 - 774734 - f 81 -9.9 -3.47349 | opp_overlap 774748, overlap 774738 774748 CTGCGAAAGCGAGAA TCCAGTTGAGTAAAGCTTC TTA AAAGCTTTACTCAAGAAGA AAGTAATATAATAAA TERM 677 774770 - 774738 - f 85 -11.5 -2.62316 | opp_overlap 774748, overlap 774734 774748 GAAAGCGAGAATCCA GTTGAGTAAAGCTTC TTA AAAGCTTTACTCAAG AAGAAAGTAATATAA RrIowa_0965 774899 - 775591 + | glycoprotease family protein RrIowa_0966 776910 - 775648 - | hypothetical protein RrIowa_0967 779772 - 777277 - | translation initiation factor IF-2 TERM 678 777882 - 777860 - G 71 -8.6 -3.03243 | opp_overlap 777860 777863 ACCGACCCTTGAACA TCACCTTTAA TAA TTAAAGGTAA TTCCTTAATTTTACT TERM 679 778888 - 778900 + g 79 -9.1 -3.35723 | overlap 778886 TGTTGCAACTAGTTC TGCCG TAT CGGCA TCTATTGTTTGGCTA TERM 680 779277 - 779295 + g 76 -6.8 -4.52502 | opp_overlap 779277 779281, overlap 779274 779281 GCATTCCTACTAAAG GAGACTTT ACA AAAGTTTC TTCTTTCTTTTTAGG RrIowa_0968 781522 - 780011 - | transcription elongation factor NusA TERM 681 781536 - 781547 + r 72 -4.4 -5.12617 | ATATATTATCTCTTA TTGC TTTA GCAA TTTTTTAAATACTTC RrIowa_0969 782018 - 781533 - | hypothetical protein TERM 682 782057 - 782041 - R 100 -9.4 -5.56673 | opp_overlap 782041 782039 782037 ATTTATAACAAAAAA GGTGGG ATAAA CCCACC TATCTATAATTTTTA TERM 683 782041 - 782057 + r 76 -9.4 -3.12138 | opp_overlap 782041, overlap 782039 782037 ATTTATAACAAAAAA GGTGGG ATAAA CCCACC TATCTATAATTTTTA RrIowa_0970 782548 - 782192 - | hypothetical protein RrIowa_0971 782768 - 783031 + | hypothetical protein RrIowa_0972 783468 - 783070 - | hypothetical protein RrIowa_0973 783536 - 783964 + | Rrf2 family protein RrIowa_0974 784714 - 783959 - | hemolysin TERM 684 784818 - 784768 - R 70 -5 -4.62984 | opp_overlap 784770 784773 784775 784777, overlap 784770 784775 CCATTAGATAGAAAA TATACAATTTGTCTAATTGAAAGT TAC AGTTTCAATTAGACATAATATATT TGAGCCATACAATAA TERM 685 784816 - 784770 - R 76 -7.6 -3.92276 | opp_overlap 784770 784773 784775 784777, overlap 784768 784775 ATTAGATAGAAAATA TACAATTTGTCTAATTGAAAGT TAC AGTTTCAATTAGACATAATATA TTTGAGCCATACAAT TERM 686 784811 - 784775 - R 90 -9.7 -3.87562 | opp_overlap 784775 784773 784770 784777, overlap 784770 784768 ATAGAAAATATACAA TTTGTCTAATTGAAAGT TAC AGTTTCAATTAGACATA ATATATTTGAGCCAT TERM 687 784775 - 784812 + r 72 -8.1 -3.24708 | gap 1, opp_overlap 784770 784768 784775, overlap 784773 784770 784777 ATAGAAAATATACAA TT-TGTCTAATTGAAAGT TAC AGTTTCAATTAGACATAA TATATTTGAGCCATA TERM 688 784777 - 784809 + r 100 -12.3 -2.80821 | opp_overlap 784775 784770 784768, overlap 784775 784773 784770 AGAAAATATACAATT TGTCTAATTGAAAGT TAC AGTTTCAATTAGACA TAATATATTTGAGCC RrIowa_0975 786108 - 784873 - | tyrosyl-tRNA synthetase RrIowa_0976 786396 - 786112 - | hypothetical protein RrIowa_0977 786652 - 786401 - | hypothetical protein RrIowa_0978 786720 - 786977 + | hypothetical protein TERM 689 787136 - 787154 + T 81 -9.6 -3.53224 | opp_overlap 787136 787135 787151 ATGAATCAGTAAAAT CCACTGTG TCA TACAGTGG TTTGACCACGGGATC TERM 690 787154 - 787136 - T 73 -8.9 -3.21124 | opp_overlap 787136, overlap 787135 787151 ATGAATCAGTAAAAT CCACTGT GTCAT ACAGTGG TTTGACCACGGGATC RrIowa_0980 789275 - 788796 - | hypothetical protein RrIowa_0981 789821 - 789480 - | hypothetical protein RrIowa_0982 790107 - 789895 - | hypothetical protein RrIowa_0984 790591 - 790391 - | hypothetical protein RrIowa_0983 790575 - 790802 + | hypothetical protein RrIowa_0987 791886 - 791656 - | proline/betaine transporter RrIowa_0988 792437 - 792168 - | hypothetical protein RrIowa_0989 792492 - 792385 - | hypothetical protein RrIowa_0990 792674 - 792498 - | hypothetical protein TERM 691 794391 - 794379 - R 75 -5.5 -4.8048 | GTTGTATAGTAAAAA CCGAT AAA ACCGG GATGCATCATATCTT TERM 692 794901 - 794917 + r 77 -8.1 -3.86252 | ATGATGCCTTAACCG GCTTATA CAA TATAAGC TTATATTTAGTAGGA RrIowa_1002 800045 - 799581 - | 3-hydroxyacyl-CoA dehydrogenase RrIowa_1003 800490 - 800302 - | amidophosphoribosyltransferase family protein RrIowa_1004 801332 - 800865 - | hypothetical protein RrIowa_1005 801472 - 801356 - | hypothetical protein RrIowa_1006 801976 - 801734 - | hypothetical protein RrIowa_1007 802432 - 802166 - | hypothetical protein RrIowa_1008 803734 - 802610 - | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 693 803810 - 803824 + r 71 -7 -3.89956 | ACGTAAGCTTGTGTA CGCTGC GGT GCTGCG TTTCGTGTCTCCTAC RrIowa_1009 804143 - 803877 - | putative monovalent cation/H+ antiporter subunit F ntrX 804680 - 806104 + | nitrogen assimilation regulatory protein RrIowa_1011 806097 - 807842 + | hypothetical protein TERM 694 807981 - 807960 - g 81 -7.5 -4.2828 | opp_overlap 807960 807959 807956 GGGCATCCAGTAAAA CATATAAAA AATT TTTTATATG CTTATTTTGTTAAAG RrIowa_1012 807855 - 808055 + | hypothetical protein RrIowa_1013 809023 - 808064 - | hypothetical protein TERM 695 809300 - 809336 + r 76 -6.9 -4.42386 | opp_overlap 809310, overlap 809304 CTTGATCACGGGGTC TAATTAAAAATACTAAT ATT ATTAGTATTTTAAGTTG TTTTCTGGATACCAC TERM 696 809326 - 809310 - R 82 -6.7 -4.8622 | opp_overlap 809304 809300 GGGTCTAATTAAAAA TACTAAT ATT ATTAGTA TTTTAAGTTGTTTTC RrIowa_1014 811483 - 809702 - | cell elongation specific D,D-transpeptidase TERM 697 810781 - 810798 + g 71 -6.3 -4.22009 | TATCTTCACCCGATT TAGTAGG GGTT CCTGCTA TTTCTCTTACCTGCT RrIowa_1015 811994 - 811473 - | PP-loop superfamily ATPase RrIowa_1016 812378 - 812244 - | hypothetical protein ftsI 814294 - 812609 - | cell division protein TERM 698 814362 - 814345 - R 91 -11.3 -3.06831 | opp_overlap 814357, overlap 814357 GCAATCCTTATGTAA TTCCCGC AAAA GCGGGAA TCCAGTACTTTAAAA RrIowa_1018 814507 - 814337 - | hypothetical protein TERM 699 814423 - 814389 - G 71 -6.7 -4.10855 | opp_overlap 814383 814389, overlap 814379 AAAACCTTTTCAAAA CTTGATTTGAAAAAT AAAAA ATCTTTAAAATCAAG ATGTTTTGAAAAGCT RrIowa_1019 815036 - 814638 - | hypothetical protein mraW 815966 - 815043 - | S-adenosyl-methyltransferase MraW mraZ 816415 - 815966 - | cell division protein MraZ TERM 700 816586 - 816559 - H 75 -5.8 -4.8236 | opp_overlap 816558 816566, overlap 816561 TATCCAAAAAAATAA TTTAAAATACTA ATAT TAGTATTTTAGA ATGGATTCCGCTATC RrIowa_1022 816868 - 816930 + | hypothetical protein RrIowa_1023 817220 - 817348 + | hypothetical protein RrIowa_1024 817352 - 818749 + | major facilitator superfamily permease RrIowa_1025 818974 - 819189 + | hypothetical protein RrIowa_1026 821297 - 819378 - | excinuclease ABC subunit C TERM 701 819468 - 819506 + g 77 -3.3 -5.49809 | gap 2, opp_overlap 819487 819488, overlap 819471 819487 ATATATGGTTGCGTC GCA-TACTGCTTTA-TACG AAC CGAAATAATGCAGTAATGC TTTTTTTCGAGTTTC TERM 702 820997 - 820987 - G 71 -5.4 -4.62054 | TTAATGAAAGGAAAA GACT TGC AGTC CTTAAGAAGAATATT TERM 703 821245 - 821228 - G 76 -7.7 -3.93673 | CAAACATTCGATAAA CCCCTGA ACGT TCAGGAG CATCTATAAGTTTAG RrIowa_1027 821989 - 821462 - | hypothetical protein TERM 704 821661 - 821651 - G 77 -5.4 -4.86621 | opp_overlap 821651 ACCGGCAATTAAAAA TGGA TAA TCCA CTTTTACCATTTTAC RrIowa_1028 822570 - 822043 - | hypothetical protein TERM 705 823038 - 823022 - R 74 -8.1 -3.56325 | opp_overlap 823022 CCGTTATAAGTACAA TTGAAGA TCC TCTTCAA TCATTCAAATCGGTT TERM 706 823695 - 823682 - R 73 -3.9 -5.25803 | opp_overlap 823682 AACCGCTACAAAAAA GATAT TTTC ATATC TGTCATCTTTATTAA RrIowa_1032 824349 - 823843 - | ADA regulatory protein TERM 707 824373 - 824390 + H 74 -2.1 -5.63517 | CCTAAATATGATTTC TTAATAT TATA ATATTGA TTTTTTATTTAACAA RrIowa_1033 824445 - 824588 + | hypothetical protein RrIowa_1034 824639 - 824827 + | hypothetical protein RrIowa_1035 824963 - 825070 + | hypothetical protein TERM 708 825095 - 825071 - T 76 -8.7 -3.44553 | opp_overlap 825071 TTAAAAATTCTATAA TAGCGCATTAT GCA ATAATTCGCTA TTTGCGTTATTTAAG TERM 709 825071 - 825095 + T 82 -8.7 -3.89435 | opp_overlap 825071 TTAAAAATTCTATAA TAGCGCATTAT GCA ATAATTCGCTA TTTGCGTTATTTAAG RrIowa_1036 825247 - 825116 - | hypothetical protein RrIowa_1037 825326 - 825231 - | hypothetical protein RrIowa_1038 825406 - 825281 - | hypothetical protein TERM 710 825382 - 825410 + gr 71 -4.6 -4.74504 | gap 1, overlap 825386 825387 AAGCTATTATTGTTT TGTTAGTGCCGAG TTCA CTTGGCAC-ATCA TTTTTAAATTCAGCT TERM 711 825387 - 825406 + gr 76 -10 -2.56432 | overlap 825386 825382 ATTATTGTTTTGTTA GTGCCGAG TTCA CTTGGCAC ATCATTTTTAAATTC RrIowa_1039 825654 - 825457 - | hypothetical protein RrIowa_1040 825898 - 825731 - | hypothetical protein TERM 712 826144 - 826132 - R 77 -4.9 -5.31456 | opp_overlap 826132 826143 TTAATTTATAAAAAA TAAGT CGT ACTTA ATAATTTATTATTCT RrIowa_1042 826728 - 826519 - | hypothetical protein RrIowa_1043 827324 - 827076 - | hypothetical protein TERM 713 827790 - 827817 + r 78 -9.2 -3.23869 | gap 1, overlap 827788 ATACCCAAATCGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTTATGAAATAATA RrIowa_1044 828342 - 828136 - | hypothetical protein secA 831063 - 828343 - | preprotein translocase subunit SecA TERM 714 830479 - 830462 - G 70 -4.1 -4.71222 | gap 1, overlap 830466 ATAGCAAAATTAAAA GGACGCAG TAC CCGC-TCC TGCAAGCTATACTTC RrIowa_1046 831264 - 831145 - | hypothetical protein TERM 715 831363 - 831351 - g 73 -7.7 -3.89695 | TGCTGATAAAGACAA GGTAG TTG CTACC TATAAAGGCGGTGAA RrIowa_1047 831280 - 832128 + | peptidyl-prolyl cis-trans isomerase RrIowa_1048 832733 - 832338 - | 4'-phosphopantetheinyl transferase TERM 716 832723 - 832744 + g 79 -8.8 -3.84648 | opp_overlap 832723 832721 ATATCAGTACCAACA CCGATAAG CATTTA CTTATCGG TTTCATAATCTTCGC TERM 717 832744 - 832723 - G 77 -9.5 -3.1829 | opp_overlap 832723, overlap 832721 ATATCAGTACCAACA CCGATAAGC ATTT ACTTATCGG TTTCATAATCTTCGC RrIowa_1049 833117 - 832734 - | DNA-directed RNA polymerase subunit omega TERM 718 832979 - 832989 + g 84 -5.4 -5.45813 | ATGCGATAACAGGAG GCTT ATC AAGC TTTTCTTTTTTGATG RrIowa_1050 834555 - 833296 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 719 834604 - 834640 + r 70 -8.7 -2.64416 | opp_overlap 834606 834607 834628, overlap 834603 AGAAAAAACTGATTA AATTGTCATACCGTGGT CAA GCCACGGTATGACACCG ATTATACTACACATC TERM 720 834638 - 834606 - R 100 -15 -3.86795 | opp_overlap 834604 834603, overlap 834607 834628 AAAAAACTGATTAAA TTGTCATACCGTGG TCAAG CCACGGTATGACAC CGATTATACTACACA TERM 721 834637 - 834607 - R 100 -18.5 -2.9045 | opp_overlap 834604 834603, overlap 834606 834628 AAAAACTGATTAAAT TGTCATACCGTGG TCAAG CCACGGTATGACA CCGATTATACTACAC RrIowa_1051 837070 - 834647 - | DNA gyrase subunit B TERM 722 836105 - 836122 + g 83 -4.9 -5.4505 | CCTAGTATCTTCACC GCTAAAG TAAT TTTTAGC TTTTTTATTAAGACC TERM 723 836836 - 836849 + g 85 -6.7 -5.37171 | overlap 836823 GCCCGTTATCGGATA CGGTT ACTG AACCG TTTTTATTTAATGTT RrIowa_1052 837176 - 838036 + | HAD superfamily hydrolase TERM 724 839328 - 839304 - g 87 -11.7 -3.16881 | opp_overlap 839311, overlap 839311 TAGGTAGCGTATCAA TCGATAATATA ATT TATATTATCGA AGAACAAGCCGGCAA TERM 725 839654 - 839640 - g 74 -5.6 -4.75288 | opp_overlap 839642, overlap 839642 TTATATTAAAAGAAA TAGCCG TAT CGGCTT TTAACGGTTTTGTAC TERM 726 839652 - 839642 - g 79 -8.2 -3.98052 | opp_overlap 839642, overlap 839640 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT TERM 727 839642 - 839652 + G 81 -8.2 -4.19879 | opp_overlap 839642 839640 ATATTAAAAGAAATA GCCG TAT CGGC TTTTAACGGTTTTGT mgtE 838541 - 839911 + | Mg2+ transporter RrIowa_1055 840206 - 839922 - | hypothetical protein TERM 728 840371 - 840385 + H 75 -4.2 -5.30155 | overlap 840372 AATTATCAACTTTTT CTAGGC AAT GCCTAA TTTTTTAATTAATAG TERM 729 840372 - 840384 + H 74 -7.7 -3.77008 | overlap 840371 ATTATCAACTTTTTC TAGGC AAT GCCTA ATTTTTTAATTAATA RrIowa_1056 840644 - 840973 + | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase TERM 730 840950 - 840982 + T 76 -8.7 -3.42996 | opp_overlap 840950 840956, overlap 840955 840956 TCACTGAGAAAGCTA GAAAAATTATTGAAG CGA CTTTAATAAATTTTC TTCTGATCGCTGCTA TERM 731 840976 - 840956 - T 70 -4.1 -4.95896 | opp_overlap 840956 840955 840950, overlap 840950 AGAAAGCTAGAAAAA TTATTGAAG CGA CTTTAATAA ATTTTCTTCTGATCG RrIowa_1057 841423 - 841082 - | proline/betaine transporter TERM 732 842894 - 842940 + r 81 -8.4 -4.07568 | gap 3, overlap 842895 842896 CTCCAGTGATTTTGT C-CAT--TTTATGTCATTCCCGC GTAG GCGGGAATGACATAGAGCATGTG TTTTGAGCCAAGCAA TERM 733 842895 - 842938 + r 95 -12.1 -3.63744 | gap 2, overlap 842894 842896 TCCAGTGATTTTGTC CAT--TTTATGTCATTCCCGC GTAG GCGGGAATGACATAGAGCATG TGTTTTGAGCCAAGC TERM 734 842896 - 842935 + r 100 -15.2 -2.63623 | overlap 842895 842894 CCAGTGATTTTGTCC ATTTTATGTCATTCCCGC GTAG GCGGGAATGACATAGAGC ATGTGTTTTGAGCCA RrIowa_1061 843228 - 842998 - | hypothetical protein RrIowa_1062 843435 - 843617 + | lipoprotein TERM 735 843739 - 843757 + G 73 -4.6 -4.91573 | overlap 843724 843721 TCGGGGTTAACAAGC TTAATACC GAT GGTTTTAA TTTTTGCTGTATTTT yajC 843628 - 844053 + | preprotein translocase subunit YajC secD 844037 - 845593 + | preprotein translocase subunit SecD TERM 736 845880 - 845866 - g 73 -4.4 -4.89393 | CAAATGTTATAAAAA TAATTA TCG TAATTA GCTTATTAATAGGAG TERM 737 846161 - 846151 - g 70 -4 -4.93454 | TAAATAAACATAAAA TAGA TAT TCTA CCTGTTTTTATCACT RrIowa_1065 845838 - 846455 + | cytochrome c oxidase Cu(A) center assembly protein RrIowa_1066 846557 - 846943 + | cytochrome c-type biogenesis protein CcmE TERM 738 846960 - 846932 - f 83 -11.1 -3.04188 | GATGAGAATTACAGA CCTCCGCAATAAC AAC GTCATTGCGAAGA GCGAAGCGACGTGAC RrIowa_1067 847069 - 847590 + | inorganic pyrophosphatase TERM 739 847710 - 847740 + F 70 -5.6 -4.30978 | opp_overlap 847710 847714, overlap 847714 AATTAACAAAATAAA CCTATAAAAAGAAG TTT TTATTTTTTATAGG TTTTACTGGATTCCC TERM 740 847714 - 847729 + F 74 -3.4 -5.35222 | opp_overlap 847710 847714, overlap 847710 AACAAAATAAACCTA TAAAAA GAAG TTTTTA TTTTTTATAGGTTTT TERM 741 849251 - 849237 - g 74 -5.7 -4.66746 | TACAAAACAAAATAA GCTTC ATATA GAAGC CGGTATAAAACTTTT TERM 742 849312 - 849326 + G 75 -7.2 -4.09628 | opp_overlap 849312 849311, overlap 849317 AATGTCTATTATAAT TGCTTT AAT AAAGCA TTATTATTTAGAATA mviN 847801 - 849468 + | virulence factor TERM 743 849517 - 849533 + G 72 -9.5 -2.75389 | opp_overlap 849501 849515 CTTAGCTATTATAGC CATGATC ATT GATCATG TAGGTTTATATCTAT TERM 744 849922 - 849938 + G 83 -5.9 -5.04356 | opp_overlap 849922, overlap 849908 849935 GGCAAACTTAAAACT TTGCTGT TTT ATAGCAA TTTTTGCTTCTTTCG RrIowa_1069 849449 - 850201 + | hypothetical protein RrIowa_1070 850272 - 850910 + | hypothetical protein TERM 745 851033 - 851049 + T 72 -8.1 -3.31144 | opp_overlap 851036, overlap 851036 CGAGATTGCTTTATC GAATTAC TGC GTAATTC TTCTCGCAATGACAG recG 853259 - 851118 - | ATP-dependent DNA helicase TERM 746 853845 - 853831 - H 70 -4.3 -4.92757 | TTATCAACAACAAAA TGGTT AACTA AACCA CGCTCTAAACCGTAT RrIowa_1075 854601 - 854723 + | hypothetical protein TERM 747 855300 - 855280 - g 72 -4.7 -4.79352 | TGATTTATAATAAAA CTGCACGAA ATT TTAATGCAG TCATGGCAGGTGCCG RrIowa_1076 854826 - 855467 + | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A RrIowa_1077 855471 - 856106 + | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B RrIowa_1078 856188 - 856403 + | Trp repressor binding protein RrIowa_1079 856440 - 856667 + | Trp repressor binding protein TERM 748 856685 - 856712 + T 100 -17.2 -4.38927 | opp_overlap 856711, overlap 856711 TTATATGGTGTTTTA TGTCATTCCCAC TTCC GTGGGAATGACA TTTATTATCTAACAA rickA 858162 - 856717 - | Arp2/3 complex activation protein RrIowa_1081 859366 - 858281 - | phospho-N-acetylmuramoyl-pentapeptide-transferase RrIowa_1082 860900 - 859551 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 749 861002 - 860967 - RH 82 -10.8 -2.57244 | opp_overlap 860968 860972, overlap 860972 GTAGGCAGGAAGCCA GTAAACATATAAAAAG CAAG CTTTTTATATGTTTAT TTTATCAAATATGTC TERM 750 860968 - 861001 + rH 100 -14.3 -4.4195 | opp_overlap 860967 860972, overlap 860972 TAGGCAGGAAGCCAG TAAACATATAAAAAG CAAG CTTTTTATATGTTTA TTTTATCAAATATGT TERM 751 860997 - 860972 - RH 91 -10.7 -3.80114 | opp_overlap 860972 860968, overlap 860967 CAGGAAGCCAGTAAA CATATAAAAAG CAAG CTTTTTATATG TTTATTTTATCAAAT TERM 752 860972 - 860997 + rH 100 -10.7 -4.77775 | opp_overlap 860967 860972, overlap 860968 CAGGAAGCCAGTAAA CATATAAAAAG CAAG CTTTTTATATG TTTATTTTATCAAAT RrIowa_1084 862547 - 861108 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 753 862472 - 862461 - GH 71 -3 -5.09426 | TTTAATCGCAAAAAA GATA TCTT TATC CTTAACGGTTTTAGA TERM 754 862668 - 862641 - gR 74 -9.2 -2.80113 | gap 1, overlap 862608 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TTGCAA TGACAGAGCAGGAAT RrIowa_1083 862539 - 862685 + | hypothetical protein RrIowa_1085 866062 - 862694 - | transcription-repair coupling factor TERM 755 864156 - 864139 - G 80 -7.1 -4.57353 | GTTGACTACATAAAA TAGTTGT CGGT ACAACTA CTGCTACTTGAGGTA RrIowa_1086 866337 - 866074 - | hypothetical protein TERM 756 866303 - 866317 + g 79 -3.6 -5.41941 | overlap 866304 CTACGGTAAACAAGT TTCTTT TGT AAAGAG TTTTTATTTAATTTA RrIowa_1087 866446 - 866868 + | rhodanese-related sulfurtransferase TERM 757 867636 - 867652 + G 72 -5.9 -4.35885 | opp_overlap 867636 TACATTGATTGATAA TAACCGT CAA ATGGTTA TTTCTTGTGATAGAT dnaA 866869 - 868260 + | chromosomal replication initiation protein TERM 758 868274 - 868284 + F 70 -5.4 -4.52345 | AAACGTCATACCGTA GTCA AGC TGAC TTTGTTTCATGGTCT RrIowa_1089 868806 - 869051 + | hypothetical protein RrIowa_1090 869169 - 869038 - | hypothetical protein RrIowa_1091 869669 - 869508 - | hypothetical protein TERM 759 869568 - 869603 + g 83 -10.2 -3.29511 | gap 1, opp_overlap 869567 869566 CATAGGAAAAAACTC CTTATATGATAAAAATA TAC TATTTTTATCA-ATAAG TTCTAAAAACATAGG TERM 760 870024 - 870043 + r 70 -3.6 -5.17576 | GTCCTTTAGAATTAT GTATGGGT TATT ACTTATAC TTTTTTAAGTTGATA RrIowa_1092 870171 - 870034 - | hypothetical protein RrIowa_1093 870531 - 870256 - | hypothetical protein RrIowa_1094 870895 - 870560 - | hypothetical protein TERM 761 872037 - 872011 - g 71 -3 -5.03145 | overlap 872019 GAATTTGCTAAAAAA TCTATATATGGA AGC TCCACCTTTAGA GATATACCTTATAAT RrIowa_1095 871084 - 872556 + | patatin-like protein RrIowa_1096 872879 - 872745 - | bicyclomycin resistance protein TERM 762 873842 - 873825 - R 74 -6.3 -4.48317 | overlap 873830 873836 TGATAAAATAAATAA GCATAGA AGCA TCCATGC CGGAATCTTCGCAAT RrIowa_1100 874108 - 874013 - | hypothetical protein RrIowa_1101 874326 - 874165 - | hypothetical protein RrIowa_1102 874714 - 874559 - | hypothetical protein RrIowa_1103 875881 - 874784 - | translation-associated GTPase TERM 763 874974 - 874957 - G 70 -6.9 -3.72592 | opp_overlap 874971, overlap 874945 874944 874959 AATCGGTATGAATAA TACCGGC AGCA GCCGGTG CAAGTGTGCCATCTT TERM 764 874972 - 874959 - G 79 -9.5 -3.44284 | opp_overlap 874971, overlap 874945 874944 874957 TCGGTATGAATAATA CCGGC AGCA GCCGG TGCAAGTGTGCCATC TERM 765 875051 - 875033 - G 74 -3.2 -5.21709 | opp_overlap 875033 875034, overlap 875034 TCCTATAGTAAAAAA GCTTTTAA GGT TTAAAAGA TTATACCCCTCTTTA TERM 766 875416 - 875431 + g 70 -4.6 -4.78149 | CTACCATTGCTTTAT CGCCTG ACTT CAAGCG TTTTTCACTTGTAGC RrIowa_1106 877067 - 876510 - | peptidyl-tRNA hydrolase TERM 767 876930 - 876941 + g 82 -3 -5.73978 | overlap 876926 AATAGTTTCAGCAAT TTCA CAAT TGAA TTTTTTCTTTGTACT RrIowa_1107 878003 - 877392 - | 50S ribosomal protein L25/general stress protein Ctc queE 879431 - 878754 - | queuosine biosynthesis protein RrIowa_1109 879535 - 879804 + | 50S ribosomal protein L35 RrIowa_1110 879824 - 880177 + | 50S ribosomal protein L20 TERM 768 880184 - 880218 + F 100 -14.4 -4.02424 | opp_overlap 880178 880186 880217, overlap 880175 880186 CATATTTAAGTATTT AATGTCATCTCGTGGT CAA GCCACGGGATGACATA TTTATAATAATTAAT TERM 769 880216 - 880186 - f 100 -14.1 -3.1364 | opp_overlap 880184 880175 880186, overlap 880178 TATTTAAGTATTTAA TGTCATCTCGTGG TCAAG CCACGGGATGACA TATTTATAATAATTA TERM 770 880186 - 880216 + F 100 -17 -3.59935 | opp_overlap 880186 880178, overlap 880184 880175 TATTTAAGTATTTAA TGTCATCTCGTGGT CAA GCCACGGGATGACA TATTTATAATAATTA RrIowa_1111 880260 - 880394 + | 50S ribosomal protein L34 RrIowa_1112 880414 - 880770 + | ribonuclease P TERM 771 881036 - 881081 + T 100 -10.5 -4.57569 | overlap 881040 TGCGTTGTGGCATGG CTCGTTTTATGTCATTCCCGC TGTC GCGGGAATGACATCGAGTAGG TTTTTCAAGCCATGC TERM 772 881040 - 881077 + T 100 -14.3 -2.83903 | overlap 881036 TTGTGGCATGGCTCG TTTTATGTCATTCCCGC TGTC GCGGGAATGACATCGAG TAGGTTTTTCAAGCC RrIowa_1113 882398 - 881136 - | hypothetical protein TERM 773 881874 - 881848 - G 90 -8.2 -5.30616 | opp_overlap 881848 881847 GCACTTAAAGAAAAA CTATAAATTTGA TTG TCTAATTTATAG CTTATACTAAAATCT TERM 774 882462 - 882426 - R 72 -8.2 -3.25758 | opp_overlap 882426 ATATAATTAACTTAA TTACCATATTCTATGG GATTA CCACATAATATGGCAA TTTTTATAAAAGTCA TERM 775 882621 - 882648 + r 85 -11.5 -2.72344 | opp_overlap 882621 GTAACCGGCAAAAAA GGGATAAGATT TAAAAC AATCTTATCCC TAGTTGCGAATAAAA TERM 776 882648 - 882621 - R 100 -11.5 -5.055 | opp_overlap 882621 GTAACCGGCAAAAAA GGGATAAGATT TAAAAC AATCTTATCCC TAGTTGCGAATAAAA RrIowa_1114 883049 - 882792 - | hypothetical protein RrIowa_1115 883803 - 883705 - | hypothetical protein RrIowa_1116 884271 - 884023 - | hypothetical protein corA 885448 - 884489 - | magnesium and cobalt transport protein RrIowa_1118 886386 - 886195 - | hypothetical protein TERM 777 887275 - 887294 + H 73 -9.2 -2.65808 | opp_overlap 887271 887275, overlap 887272 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 778 887294 - 887275 - H 85 -11.4 -2.5602 | opp_overlap 887275 887272, overlap 887271 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 779 888688 - 888665 - H 81 -10.4 -3.14132 | opp_overlap 888665 888669, overlap 888669 CCCGTCTGCCACTAA CTAATTGGAG CAAG CCCCAATTAG TCCGTTCGACTTGCA TERM 780 888732 - 888769 + H 78 -6.6 -4.55128 | gap 2, overlap 888735 888738 888743 888762 888763 CCGATAGCGTTCGTT CTGAGCCAGGATCAAACT CTCA AGTTTGATTCTG--TCAG TTTTACTTTAAAAAT TERM 781 888738 - 888765 + H 100 -12.2 -2.82666 | overlap 888735 888732 888743 888762 888763 GCGTTCGTTCTGAGC CAGGATCAAACT CTCA AGTTTGATTCTG TCAGTTTTACTTTAA TERM 782 888762 - 888791 + H 71 -6.6 -4.02542 | overlap 888738 888735 888732 888763 ACTCTCAAGTTTGAT TCTGTCAGTTTT ACTTTA AAAATTGACAGG TTTAATTATCACTTT RrIowa_1120 888784 - 889020 + | hypothetical protein ntrY 891872 - 890073 - | nitrogen regulation protein TERM 783 891424 - 891443 + g 78 -7.8 -4.26622 | opp_overlap 891409 891419 891418 891428, overlap 891428 TCGCTTAAATCTTCA GCAACGGC TAAA GCCGTTTC TTTTAGCTGTAATTT TERM 784 891428 - 891439 + g 83 -7.2 -4.70515 | opp_overlap 891419 891418 891428, overlap 891424 TTAAATCTTCAGCAA CGGC TAAA GCCG TTTCTTTTAGCTGTA RrIowa_1125 891988 - 891890 - | hypothetical protein TERM 785 892177 - 892200 + r 76 -6.8 -4.3851 | opp_overlap 892177 ATGACAATAAAAAAA GCTAGCAATA TTAA TATTTCTAGC TTTATATTTAGTATG TERM 786 892200 - 892177 - R 95 -6.8 -5.89921 | opp_overlap 892177 ATGACAATAAAAAAA GCTAGCAATA TTAA TATTTCTAGC TTTATATTTAGTATG RrIowa_1126 892432 - 892232 - | 30S ribosomal protein S21 RrIowa_1127 892457 - 893122 + | hypothetical protein RrIowa_1128 893132 - 893341 + | hypothetical protein TERM 787 893556 - 893540 - f 70 -5.2 -4.67173 | CAATTTAAAAAAGAA TGTTCT AATAA AGAACA TGATAGAACATTAGT RrIowa_1129 893766 - 893888 + | hypothetical protein RrIowa_1130 894377 - 897697 + | isoleucyl-tRNA synthetase RrIowa_1131 898157 - 898438 + | hypothetical protein RrIowa_1132 898609 - 898803 + | hypothetical protein TERM 788 899274 - 899315 + F 100 -14.3 -3.39895 | gap 1, opp_overlap 899286 899314, overlap 899286 GGCTTGTCCATGGGG TCTAGTT-AAAAATACTAAT AAT ATTAGTATTTTTCAACTAGA TTGCTTAATCAAAAC TERM 789 899302 - 899286 - f 78 -6.7 -4.65895 | opp_overlap 899274 899286 GGGTCTAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTCAACTAGATT TERM 790 899286 - 899302 + F 78 -6.7 -4.63184 | opp_overlap 899286, overlap 899274 GGGTCTAGTTAAAAA TACTAAT AAT ATTAGTA TTTTTCAACTAGATT TERM 791 899383 - 899431 + F 100 -12.1 -5.24129 | opp_overlap 899384 899386 899388 899390 899401, overlap 899384 ACATTTATTAGATAC ATATATATTACCACGAAACATGA GAA TCATATTTCATGGTAATATATAC TTTTTTATAAAAAAA TERM 792 899430 - 899384 - f 100 -20 -3.02947 | opp_overlap 899383 899384, overlap 899386 899388 899390 899401 CATTTATTAGATACA TATATATTACCACGAAACATGA GAA TCATATTTCATGGTAATATATA CTTTTTTATAAAAAA TERM 793 899384 - 899430 + F 100 -15.6 -3.73995 | opp_overlap 899384 899386 899388 899390 899401, overlap 899383 CATTTATTAGATACA TATATATTACCACGAAACATGA GAA TCATATTTCATGGTAATATATA CTTTTTTATAAAAAA TERM 794 899428 - 899386 - f 100 -18.2 -3.0682 | opp_overlap 899384 899383, overlap 899384 899388 899390 899401 TTTATTAGATACATA TATATTACCACGAAACATGA GAA TCATATTTCATGGTAATATA TACTTTTTTATAAAA TERM 795 899426 - 899388 - f 100 -16.4 -3.08912 | opp_overlap 899384 899383, overlap 899386 899384 899390 899401 TATTAGATACATATA TATTACCACGAAACATGA GAA TCATATTTCATGGTAATA TATACTTTTTTATAA TERM 796 899424 - 899390 - f 100 -14.6 -3.09655 | opp_overlap 899384 899383, overlap 899388 899386 899384 899401 TTAGATACATATATA TTACCACGAAACATGA GAA TCATATTTCATGGTAA TATATACTTTTTTAT RrIowa_1133 899513 - 899734 + | hypothetical protein RrIowa_1134 900044 - 899892 - | hypothetical protein RrIowa_1135 902034 - 900037 - | propionyl-CoA carboxylase biotin-containing subunit TERM 797 900632 - 900621 - G 82 -4.4 -5.4433 | ATATATAAATAAAAA TAGC CGTT GCTA AAAATACGGTAGTTA TERM 798 902055 - 902079 + r 93 -11.4 -3.48593 | overlap 902057 902077 TTTATATCCTAATGT CACCCCGTGG CTTGA CCACGGGGTC TTGTGTCACAGACTG TERM 799 902057 - 902077 + r 100 -14 -3.31726 | overlap 902055 TATATCCTAATGTCA CCCCGTGG CTTGA CCACGGGG TCTTGTGTCACAGAC RrIowa_1136 903676 - 902132 - | propionyl-CoA carboxylase carboxyltransferase subunit TERM 800 902992 - 903002 + g 70 -8.2 -3.19482 | opp_overlap 902992 902991 902989, overlap 902991 TGTTAAATGCAAGAT CGGC AAC GCCG CTTTTAGTGGTATGC RrIowa_1137 903752 - 904000 + | hypothetical protein TERM 801 904786 - 904801 + G 75 -4.7 -5.00884 | ACCATAGCTTTTCTT GGCTT TATTAC AAGCC TTTTTTCCCCAAAAT RrIowa_1138 904207 - 907653 + | acylglycerophosphoethanolamine acyltransferase TERM 802 907683 - 907711 + T 71 -7.5 -3.86524 | overlap 907687 ACTGCAAGGAGCGTG GCAATCTCAGG AGTCGTA CCTGAGATTTC TTTGTCGACACCTAT TERM 803 907687 - 907707 + T 78 -6.9 -4.55295 | overlap 907683 CAAGGAGCGTGGCAA TCTCAGG AGTCGTA CCTGAGA TTTCTTTGTCGACAC znuB 908879 - 908118 - | high-affinity zinc uptake system membrane protein TERM 804 909068 - 909050 - g 76 -4.6 -5.05301 | opp_overlap 909050 909052, overlap 909044 909052 AAAGAATTAGAAAAA TTTGAGAA AAT TTCTCATA ATTGGTGGAATAAGG RrIowa_1140 909017 - 909886 + | 3-demethylubiquinone-9 3-methyltransferase TERM 805 909993 - 909964 - f 81 -7.5 -4.55383 | gap 1, opp_overlap 909972, overlap 909972 AATCCAGAAAAATAA TAAAAAAATGCTAA CTT TTAGCAT-TTTTTA CTGGATTGCTTCGTC TERM 806 909972 - 909986 + F 86 -7.2 -5.18357 | opp_overlap 909964 909972 AAAATAATAAAAAAA TGCTAA CTT TTAGCA TTTTTTACTGGATTG TERM 807 909986 - 909972 - f 95 -7.2 -6.04419 | opp_overlap 909972, overlap 909964 AAAATAATAAAAAAA TGCTAA CTT TTAGCA TTTTTTACTGGATTG TERM 808 910081 - 910117 + F 100 -14.1 -4.42653 | opp_overlap 910066 910089 CTTGATCGCGGGATC CAGTTAAACATACTAAT AAT ATTAGTATGTTTAGTTG TTTTCTGGATACCGT TERM 809 910109 - 910089 - f 83 -9.9 -3.6682 | opp_overlap 910081 CGGGATCCAGTTAAA CATACTAAT AAT ATTAGTATG TTTAGTTGTTTTCTG TERM 810 910213 - 910229 + G 70 -4.3 -4.71061 | TAATTACTAGATTTG CTCCGTC ACC GACAGGG TTTTTACATATAGGT RrIowa_1141 910185 - 911726 + | glutamyl-tRNA synthetase RrIowa_1142 911723 - 912259 + | hypothetical protein RrIowa_1143 912767 - 912510 - | hypothetical protein TERM 811 912583 - 912572 - G 75 -7.2 -4.17316 | opp_overlap 912571 912569 912572, overlap 912573 ATCTCTCTAAAAGAA CGCG AAAC CGCG CTTCTCTTTCCAGAA TERM 812 913171 - 913181 + r 75 -4 -5.28315 | TCCTTTAGATTGCTT TTAG AAC CTAA TTTTTTAAGTTTTAT TERM 813 913489 - 913471 - R 82 -7.6 -4.43307 | opp_overlap 913470 GTGTTAACAAAATAA CTTTAATT GAT AATTAAAG AGATTTTTACAGTAA TERM 814 913874 - 913890 + r 77 -4.5 -5.28176 | opp_overlap 913874, overlap 913876 ATATCCAGTTTAAAA TGCTAAT ATT ATTAGTA TTTTTTCTGGATACC RrIowa_1144 915686 - 914043 - | chaperonin GroEL TERM 815 914681 - 914700 + g 75 -5 -4.88405 | TTTTCTTATCACCGT TACCGTCA ACAA TTACGGTA TTTTCTTTAGAAATT TERM 816 915412 - 915446 + g 72 -5.8 -4.37886 | gap 1, overlap 915439 915442 CTAGCAAGTACCGTA GCTGTAGTAGTA-CC ATCACC GGCTACTTCTGCAGC TTTTGTAGCAGCTGA RrIowa_1145 916013 - 915714 - | co-chaperonin GroES TERM 817 916799 - 916822 + r 75 -4 -5.18726 | TATATTAAACATTTT TGAGAATA GGTTAAAA TATTCTCA TTTTTATTATAAAAA RrIowa_1150 917290 - 917171 - | hypothetical protein TERM 818 917313 - 917346 + r 74 -6.3 -4.42653 | opp_overlap 917323, overlap 917316 917323 CTTGATCGCGGGATC CAGTTAAAAATACTA ATAT TAGTATTTTTAATTA TTTTCTGGATACCGT TERM 819 917316 - 917343 + r 95 -10.2 -4.33182 | opp_overlap 917323, overlap 917313 917323 GATCGCGGGATCCAG TTAAAAATACTA ATAT TAGTATTTTTAA TTATTTTCTGGATAC TERM 820 917323 - 917336 + r 70 -3.9 -5.07971 | opp_overlap 917323, overlap 917316 917313 GGATCCAGTTAAAAA TACTA ATAT TAGTA TTTTTAATTATTTTC TERM 821 917735 - 917695 - R 71 -8.7 -2.83715 | opp_overlap 917693, overlap 917671 917697 TTGATCAGCATTATA GATCTAAAAATATTACT ATTACTA AACAATATTTTTAGATC TATTTATAGCAGTTA RrIowa_1155 919936 - 919217 - | ribonuclease PH TERM 822 919903 - 919914 + g 71 -3 -5.14163 | CTAATGAAATAGGAC GTAA TTGG TTAC TTTTTCTTCCTGACT grpE 920096 - 920695 + | hypothetical protein TERM 823 920982 - 921019 + G 71 -5.2 -4.62904 | gap 1, opp_overlap 920982 CATCAAAATTTAAAA TATCAAATAAATT-TGC ATCAA GCATAATTTATCTGATA TTTTTGAGCATATTT TERM 824 921019 - 920982 - g 81 -7.4 -4.44277 | gap 1, opp_overlap 920982 CATCAAAATTTAAAA TATCAAATAAATT-TGC ATCAA GCATAATTTATCTGATA TTTTTGAGCATATTT TERM 825 921753 - 921765 + G 71 -5.5 -4.46835 | overlap 921754 TTATATTCTCAATTT TTGCC TGC GGCAG TTTATTTGGAATTAT RrIowa_1157 920813 - 921883 + | permease RrIowa_1158 921899 - 922567 + | hypothetical protein RrIowa_1159 922747 - 922887 + | proline/betaine transporter RrIowa_1160 923021 - 923185 + | proline/betaine transporter TERM 826 923365 - 923351 - T 70 -5.7 -4.34559 | AAAGATAACAAATAA TCCTG TATGG CAGGA CAAAGTTAATAAGAA TERM 827 923411 - 923423 + T 77 -4.9 -5.252 | opp_overlap 923411 TTTTTTAATACAAAT TTCTA TAG TAGAA TTTTTTGTAGCACTA RrIowa_1163 924107 - 923874 - | hypothetical protein TERM 828 924304 - 924265 - H 100 -12.7 -3.23899 | opp_overlap 924270 924272 924275, overlap 924260 924275 TTTTAAGTAATTTAA TTATAGATAATTATTAA AATTTG TTAATAATTATCTATAA TGCACCCTAAAACAG RrIowa_1164 924349 - 924648 + | hypothetical protein RrIowa_1165 924809 - 925156 + | hypothetical protein TERM 829 925889 - 925844 - T 100 -10.9 -4.53303 | opp_overlap 925852, overlap 925846 GACTTTTATATAAAA CAGTATAATTTCTTTACAA TTTAACTT TTGTAAAGAAATTATACTC GGCTATGAGAAAGAA TERM 830 925887 - 925846 - T 100 -13.5 -3.87627 | opp_overlap 925852, overlap 925844 CTTTTATATAAAACA GTATAATTTCTTTACAA TTTAACTT TTGTAAAGAAATTATAC TCGGCTATGAGAAAG TERM 831 926408 - 926426 + T 76 -6.8 -4.42639 | CACTCGGTATAGTAT CTATAGTT ACC AGCTATAG TTTTAGTTGGCGTAT RrIowa_1168 927155 - 927036 - | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase RrIowa_1169 927267 - 927175 - | hypothetical protein TERM 832 927390 - 927402 + r 76 -7.7 -4.00468 | opp_overlap 927389 GATAGTACAAAATTC GCTTG TAT CAAGC TTTATGAATTATGCT TERM 833 927605 - 927564 - R 79 -7.5 -4.40963 | gap 1 AGGTTCCAAAAACAA TCAGCCA-AGTAACGTATAA TAT TAATACGTAACTATGGCTAA AGCAAGATAAAAAAG TERM 834 927659 - 927628 - R 85 -8.1 -4.42491 | gap 1 TAAAAAAGATATAAA CTGTCATACCGGGA CTTGT TCCCGGTATC-CAG AAAACCTTAAAAAGT RrIowa_1171 928703 - 928422 - | 30S ribosomal protein S20 TERM 835 928602 - 928612 + g 73 -4 -5.08601 | TTCATGTACAACTTT CTTT ATA AAAG TTTTTATTGCACTAG RrIowa_1172 929129 - 928719 - | 50S ribosomal protein L17 RrIowa_1173 930162 - 929140 - | DNA-directed RNA polymerase subunit alpha TERM 836 929863 - 929873 + g 77 -5.4 -4.88407 | CATGATACGTTTTTC TGCA ACA TGCA TTTTTACTTCAATAC RrIowa_1174 930564 - 930181 - | 30S ribosomal protein S11 RrIowa_1175 930966 - 930589 - | 30S ribosomal protein S13 TERM 837 930840 - 930851 + g 71 -3 -5.09521 | GTTCTTTCACTTTTT TATC TTTC GATA TTTTTGCTTTATTAC RrIowa_1176 931663 - 931025 - | adenylate kinase secY.2 932980 - 931679 - | preprotein translocase subunit SecY RrIowa_1178 933445 - 932984 - | 50S ribosomal protein L15 TERM 838 933200 - 933229 + g 70 -2.3 -5.27477 | opp_overlap 933225, overlap 933202 933205 ATCGGCTAATGCTTC TTCAATATTATAA ATAT TTATTATATTGTA TTTTTTAGTTGAAAT RrIowa_1179 933650 - 933459 - | 50S ribosomal protein L30 RrIowa_1180 934204 - 933674 - | 30S ribosomal protein S5 TERM 839 934238 - 934260 + r 70 -6.2 -4.07885 | overlap 934239 TAAAATTTTATTTTC TCTCTAGCTG CAT CAGCTAGCGC TTTTACAACACCGTG TERM 840 934239 - 934259 + r 77 -9.7 -3.04517 | overlap 934238 AAAATTTTATTTTCT CTCTAGCTG CAT CAGCTAGCG CTTTTACAACACCGT RrIowa_1181 934569 - 934222 - | 50S ribosomal protein L18 RrIowa_1182 935118 - 934585 - | 50S ribosomal protein L6 RrIowa_1183 935525 - 935127 - | 30S ribosomal protein S8 RrIowa_1184 935850 - 935545 - | 30S ribosomal protein S14 RrIowa_1185 936407 - 935868 - | 50S ribosomal protein L5 RrIowa_1186 936736 - 936407 - | 50S ribosomal protein L24 RrIowa_1187 937105 - 936737 - | 50S ribosomal protein L14 RrIowa_1188 937428 - 937180 - | 30S ribosomal protein S17 RrIowa_1189 937630 - 937415 - | 50S ribosomal protein L29 RrIowa_1190 938033 - 937623 - | 50S ribosomal protein L16 RrIowa_1191 938701 - 938048 - | 30S ribosomal protein S3 TERM 841 938412 - 938398 - G 75 -7.2 -4.08939 | opp_overlap 938396 938398 GAATATTTATATAAA CTTCTT TTA AAGAAG TCATTTTCTCGATAG RrIowa_1192 939062 - 938703 - | 50S ribosomal protein L22 RrIowa_1193 939349 - 939071 - | 30S ribosomal protein S19 RrIowa_1194 940195 - 939374 - | 50S ribosomal protein L2 RrIowa_1195 940492 - 940196 - | 50S ribosomal protein L23 RrIowa_1196 941112 - 940489 - | 50S ribosomal protein L4 RrIowa_1197 941870 - 941223 - | 50S ribosomal protein L3 RrIowa_1198 942188 - 941871 - | 30S ribosomal protein S10 TERM 842 942421 - 942384 - R 100 -16.1 -4.17657 | opp_overlap 942390, overlap 942390 TATTACACCTTAAAA TATAAATACCTATTATT AAAA AATAATAGGTATTTATA AAATCAATTAATTAT TERM 843 942390 - 942415 + r 95 -10.7 -3.9009 | opp_overlap 942390 942384 ACCTTAAAATATAAA TACCTATTATT AAAA AATAATAGGTA TTTATAAAATCAATT TERM 844 942415 - 942390 - R 100 -10.7 -4.45771 | opp_overlap 942390, overlap 942384 ACCTTAAAATATAAA TACCTATTATT AAAA AATAATAGGTA TTTATAAAATCAATT RrIowa_1199 943613 - 942429 - | elongation factor Tu TERM 845 943252 - 943215 - G 72 -4.9 -4.66609 | opp_overlap 943225 943226 TATTTTATTTAAAAA TACTACCATAGCAGGCA CACC TACCTGTTTTGCTAGTA ATATATGCTCTCTAG TERM 846 943781 - 943824 + H 87 -11.4 -3.0246 | TACACCCGCATTGTG GCACTATTAATAAAATAATT TCAA AGTTATTTTGTTAACAGTGC TATATCAATTTTATT RrIowa_1202 944187 - 944909 + | 23S rRNA Gm2251 methyltransferase RrIowa_1203 945020 - 945472 + | hypothetical protein TERM 847 945638 - 945628 - g 84 -5.4 -5.44119 | GCTATTTTAAAAAAA TGTG CAG CACA GGTTAATCATGAGTT RrIowa_1204 945469 - 946860 + | fumarate hydratase RrIowa_1205 946957 - 947211 + | hypothetical protein RrIowa_1206 947198 - 947521 + | hypothetical protein TERM 848 947787 - 947809 + F 74 -7.2 -4.01564 | overlap 947786 TACAATAATCCATAT TTTTCATAAA AAG TTTATGGAAA TTTCTAAATCTTTTA ftsZ 947862 - 949220 + | cell division protein FtsZ RrIowa_1208 949722 - 950144 + | hypothetical protein RrIowa_1209 950324 - 950680 + | ecotin precursor RrIowa_1210 951398 - 950826 - | mitochondrial-type Fe-S cluster assembly protein NFU TERM 849 951529 - 951496 - R 91 -9.7 -4.08394 | ACATGGCGCTCAAAA GTATTTCATTCCTGC GGCA GCAGGAATCCAATAC TACCTATCCACGTCA ampG.3 953047 - 951746 - | AmpG RrIowa_1212 954407 - 953163 - | ATP-dependent RNA helicase TERM 850 953401 - 953389 - G 71 -3.4 -5.02323 | TCAGGAGAAATAAAA GACA ACGCA TGTC CAGTAGCCCCTGCTC TERM 851 953712 - 953729 + g 72 -2.8 -5.38054 | CCTATGACCAAGTTG TTTAGT TAATGC ACTAAA TTTTTCTTTATCAGA TERM 852 954298 - 954315 + g 74 -5.5 -4.80455 | TCCGATCCCGCCATT GCAACCG GAAT CGATTGC TTTTGTATTTCAGTC TERM 853 954753 - 954768 + r 84 -9 -4.26076 | ATATTATTAGATTTA GGGCAT TTTC ATGCCC TTTTAGTAAAAATAA TERM 854 954844 - 954826 - R 75 -4.7 -5.16133 | ATTATAAGACAAAAA CAAAATA TTTAC TATTTTG ATAAAGATGACTAGG RrIowa_1213 955122 - 954910 - | cold shock protein RrIowa_1215 956543 - 956445 - | hypothetical protein RrIowa_1216 957474 - 956527 - | dimethyladenosine transferase TERM 855 957472 - 957495 + g 90 -8.4 -4.96501 | opp_overlap 957472, overlap 957492 GGGAATCCAGTAAAA CATATAAAAA CTTG TTTTTATATG TTTGTTTTTATCAAA TERM 856 957495 - 957472 - G 83 -8.4 -4.30978 | opp_overlap 957472 957492 GGGAATCCAGTAAAA CATATAAAAA CTTG TTTTTATATG TTTGTTTTTATCAAA RrIowa_1217 958472 - 957585 - | hypothetical protein RrIowa_1218 960765 - 958624 - | organic solvent tolerance protein TERM 857 959985 - 959969 - G 93 -9.5 -4.36914 | opp_overlap 959967 TCTTTTTCTAGAAAA TACGGTA ATT TACCGTA ACTAACTTGAAAATT TERM 858 960815 - 960800 - H 77 -4.8 -5.27779 | TTTAATAGTAAAAAA TAATAG CAAG CTATTA GCAATATATCAAATA TERM 859 961901 - 961887 - g 76 -4.4 -5.16237 | AATCTTATGAAAAAA TATTAT TGA ATAATA CTAGCCGGTTAATTA TERM 860 962082 - 962069 - g 70 -3.9 -4.93454 | overlap 962058 GAAACAAAGATAAAA TCTTT TTCT AAAGA AAGAGTTAACCCTGC RrIowa_1219 960995 - 962368 + | exodeoxyribonuclease VII large subunit RrIowa_1222 962829 - 963032 + | hypothetical protein TERM 861 963148 - 963137 - g 83 -5.8 -5.09762 | TTGCAAGAAATAAAA TGCG AAAC CGCA AAATTTCCTTTTGAT RrIowa_1223 963029 - 963811 + | exodeoxyribonuclease III TERM 862 963838 - 963881 + T 100 -9.6 -4.60041 | TGTTGCTATCTTAGG GTGCCGTATGTCATTCCCGC CTAC GCAGGAATGACATAGACCAC TTTTTAAAAATAAAT RrIowa_1224 964152 - 963982 - | hypothetical protein TERM 863 964472 - 964482 + G 71 -5.4 -4.63932 | opp_overlap 964472, overlap 964468 TTACCTGATGATAAG CTAC TTA GTAG TTTTGTTAGAAAATA RrIowa_1225 964169 - 965512 + | GTP-binding protein EngA RrIowa_1226 965876 - 965574 - | hypothetical protein TERM 864 966236 - 966248 + r 81 -9.1 -3.59031 | overlap 966232 ATACCTTACTTGTAT GCGGT CCT ACCGC TTCCTTATCTTTACT RrIowa_1231 968178 - 967960 - | hypothetical protein RrIowa_1232 968585 - 968364 - | hypothetical protein ubiB 970018 - 968582 - | 2-polyprenylphenol 6-hydroxylase accessory protein TERM 865 969220 - 969238 + g 90 -11.8 -3.50905 | opp_overlap 969208, overlap 969219 ATATAGAAGTGCCGT CTAACCAC TCG GTGGTTAG TATATTTTCTGATGT TERM 866 969618 - 969632 + g 73 -4.2 -5.00851 | opp_overlap 969620, overlap 969603 969627 TGGCTCACAGTCATA GACTGC GTG GCAATC TTTTGTTTGCTTGCT RrIowa_1234 970155 - 970015 - | hypothetical protein ubiE 970912 - 970166 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 867 970674 - 970690 + g 71 -6.6 -4.09243 | TTATTAACTCTATCC CTTGCT TTTTT AGCAAG TTTTAAAGCAATATC RrIowa_1236 970941 - 971762 + | formamidopyrimidine-DNA glycosylase RrIowa_1237 971812 - 972528 + | hypothetical protein RrIowa_1240 973028 - 973237 + | hypothetical protein RrIowa_1241 973697 - 973957 + | hypothetical protein TERM 868 974118 - 974104 - T 93 -5.7 -6.04419 | opp_overlap 974104, overlap 974113 AAAATAACAAAAAAA TGCTG TAAAT CAGCA TTTTTTACTGAATTG TERM 869 974104 - 974118 + T 81 -5.7 -5.18357 | opp_overlap 974104 974113 AAAATAACAAAAAAA TGCTG TAAAT CAGCA TTTTTTACTGAATTG TERM 870 975389 - 975399 + T 70 -4 -4.88067 | CTCATGTTAATATGC TTCT TTT AGAA TTTTTATACCTAAAT RrIowa_1244 975779 - 975624 - | hypothetical protein RrIowa_1245 976228 - 976094 - | hypothetical protein RrIowa_1246 977615 - 976602 - | TatD family deoxyribonuclease TERM 871 976702 - 976718 + g 72 -5.9 -4.33487 | overlap 976695 976700 GTTTTGAAGTTACGA GTAGTAA CAT TTGCTAC TTCTTTTGATGTTAT TERM 872 977527 - 977512 - G 72 -6.2 -4.42653 | opp_overlap 977512 ACGGTATCTAGAAAA CAACTA ATAT TAGTTG TTTTAATACCCTCAC TERM 873 977567 - 977547 - G 100 -15.5 -2.79679 | opp_overlap 977540 AATACCCTCACTAGA TCCCGCGAT CGC ATCGCGGGA TGAAAAGTTACTACG TERM 874 977625 - 977676 + r 75 -7.4 -4.14874 | gap 1, opp_overlap 977620 977622, overlap 977632 TAACATATTATACTC TTAGTA-GGTGTGTCATACTGCGGT CTC GCCACGGTATGACACACTATTCAAA TTTTGGAAATATTAT TERM 875 977632 - 977668 + r 100 -16.7 -3.15366 | opp_overlap 977622, overlap 977625 TTATACTCTTAGTAG GTGTGTCATACTGCGGT CTC GCCACGGTATGACACAC TATTCAAATTTTGGA RrIowa_1247 979194 - 977668 - | methionyl-tRNA synthetase RrIowa_1248 979802 - 979191 - | thymidylate kinase TERM 876 979321 - 979300 - G 78 -7.5 -4.20868 | opp_overlap 979305 TCTTTAAAACAATAA TAGATTTTT TTAT AAAAATCTA TACCTCTTATGTCAA TERM 877 981348 - 981328 - g 79 -9.8 -3.15579 | opp_overlap 981326 981324 981346 GCAACTCTTTATCAA TTGCGGTT TATAT AACCGCAA TATCGATTGTCACTT RrIowa_1249 980061 - 981428 + | transporter TERM 878 981431 - 981455 + T 79 -5.9 -5.14965 | opp_overlap 981431 AGGAATCCAGTAAAA CATATAAAAAT TAA ATTCTTATATG TTTTTTACTAGAAAT TERM 879 981455 - 981431 - T 81 -8.1 -4.31379 | opp_overlap 981431 AGGAATCCAGTAAAA CATATAAAAAT TAA ATTCTTATATG TTTTTTACTAGAAAT RrIowa_1250 982487 - 981579 - | prenyltransferase TERM 880 984218 - 984232 + G 70 -7.1 -3.80133 | overlap 984215 GACCTGAGTTATTAC CGGCT TGCGT AGCCG TATTTTATCACCCTG TERM 881 985397 - 985384 - g 74 -2.3 -5.47159 | opp_overlap 985384, overlap 985385 GGTGAAGATAAAAAA GCGAG TTTA CTCGA TATTAAAGAAAAAAT RrIowa_1254 983557 - 985995 + | valyl-tRNA synthetase RrIowa_1255 986147 - 986716 + | LicD family protein RrIowa_1256 986782 - 987582 + | LicD family protein TERM 882 988999 - 989020 + F 73 -8.7 -3.11988 | overlap 988998 TTAGCCTTCCGATGT CATTCCCAC GAAA GCGGGAATG CTTTGTTGCGTGGAC RrIowa_1259 989317 - 990615 + | RmuC family protein RrIowa_1260 990851 - 991051 + | hypothetical protein RrIowa_1261 991820 - 991948 + | hypothetical protein RrIowa_1262 992582 - 992241 - | hypothetical protein TERM 883 994078 - 994092 + H 76 -2.8 -5.53436 | AAAAACAATAGTTGT GGACAT AAC ATATCC TTTTTTATCTTCTAT RrIowa_1267 994303 - 994515 + | hypothetical protein RrIowa_1268 994834 - 995070 + | NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein RrIowa_1269 995131 - 995403 + | NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein RrIowa_1270 995447 - 995557 + | hypothetical protein RrIowa_1271 995554 - 995685 + | hypothetical protein TERM 884 995905 - 995945 + T 76 -10.1 -2.66316 | opp_overlap 995908, overlap 995908 995914 GTATTTAAACCGCTA TAATACTAGTTTAGGATAA ATT TTATACTAAATTAGTATTG TCCTGTGGTCAAGCC TERM 885 995908 - 995942 + T 81 -9.6 -3.484 | opp_overlap 995908, overlap 995905 995914 TTTAAACCGCTATAA TACTAGTTTAGGATAA ATT TTATACTAAATTAGTA TTGTCCTGTGGTCAA TERM 886 996051 - 996034 - T 91 -11.3 -3.05384 | GGCTTGTTTATGTAA TTCCCGC ATAG GCGGGAA TCCAGTAAAACATAT RrIowa_1272 997460 - 996183 - | ATP-dependent protease ATP-binding subunit TERM 887 997302 - 997314 + g 77 -4.9 -5.02606 | opp_overlap 997296, overlap 997296 AGAAGTAATTTGCTT TAAAG CAA CTTTA TTTTCTTCTTTCATA RrIowa_1273 998048 - 997497 - | ribosomal-protein-alanine acetyltransferase TERM 888 998062 - 998106 + r 100 -16.3 -4.68593 | opp_overlap 998074, overlap 998064 ATATATACTCACTAT TTTTCTGTATAATATGAATAT GCA ATATTTATATTATACAGAAGA TTTTTAAATAATGAG TERM 889 998064 - 998104 + r 100 -16.7 -2.63922 | opp_overlap 998074, overlap 998062 ATATACTCACTATTT TTCTGTATAATATGAATAT GCA ATATTTATATTATACAGAA GATTTTTAAATAATG TERM 890 998159 - 998118 - R 71 -6.7 -3.93658 | opp_overlap 998118, overlap 998121 AAGATTTTTAAATAA TGAGTATACAAGGTGAACA ACGG TTTCCACCTTGTATACAAA TTTACTTCATATTAT TERM 891 998156 - 998121 - R 100 -12.8 -3.02639 | opp_overlap 998118, overlap 998118 ATTTTTAAATAATGA GTATACAAGGTGAACA ACGG TTTCCACCTTGTATAC AAATTTACTTCATAT queC 998898 - 998212 - | queuosine biosynthesis protein RrIowa_1275 999257 - 998895 - | hypothetical protein TERM 892 999218 - 999232 + g 80 -7.2 -4.47307 | opp_overlap 999217 CTATAGTAAACCCAT CAAATG TAT CATTTG TTTTCATCTTCATTT RrIowa_1276 999393 - 999271 - | hypothetical protein TERM 893 999709 - 999699 - H 70 -4 -4.88918 | TCATTGCAAAGAAAA TTAC AAA GTAA TTGACGACGCAATCC TERM 894 1000300 - 1000312 + G 77 -4.9 -5.03747 | GATGCTAATTGGCGG CATTA CAT TAATG TTTTTTGAAAGCTTT TERM 895 1000708 - 1000733 + G 74 -6.1 -4.63527 | TATTTATTATGCGAT TATCGCCGGAG TTAG CTGTGGCGGTA TTTTTGAGCTACTAA RrIowa_1278 999854 - 1001584 + | hypothetical protein TERM 896 1001745 - 1001728 - f 85 -11.3 -2.78463 | ACGCTTTTTACTAGA TTCCCGC TTTC GCGGGAA TGACAATAAAGTATA RrIowa_1279 1001887 - 1002135 + | hypothetical protein TERM 897 1002201 - 1002183 - f 74 -6.2 -4.43307 | overlap 1002197 CTGGGAACAAAATAA TTTTAATT GAT AATTAAAA AGAATTTTTAGCGAA TERM 898 1003193 - 1003160 - g 77 -8.9 -3.60296 | opp_overlap 1003160 1003161, overlap 1003161 CATGGGCATTTTAAA CGGCACTATTGCCCT TTCT ATGGCAATAGCACCA GTTGTAGGTAGCTAT TERM 899 1003192 - 1003161 - g 78 -10.2 -2.75963 | opp_overlap 1003160 1003161, overlap 1003160 ATGGGCATTTTAAAC GGCACTATTGCCCT TTCT ATGGCAATAGCACC AGTTGTAGGTAGCTA RrIowa_1280 1002876 - 1003940 + | Bcr family multidrug resistance transporter TERM 900 1004261 - 1004273 + G 81 -7.7 -4.3467 | TGATAGTAGTCATGT CCGTT ATG AACGG TTTTCATATAGAGCT TERM 901 1005060 - 1005076 + G 79 -5.2 -5.05601 | opp_overlap 1005056 TATGGGAGCAAGCAC TAAGCA AATAA TGCTTA TTTTTATCTATAATG lolE 1004014 - 1005369 + | lipoprotein releasing system transmembrane protein lolD 1005362 - 1006027 + | lipoprotein releasing system ATP-binding protein RrIowa_1283 1006199 - 1006077 - | hypothetical protein RrIowa_1284 1006246 - 1008147 + | hypothetical protein TERM 902 1009235 - 1009215 - g 71 -8.5 -3.01637 | overlap 1009220 GATGAACATGATAGA CTTAATAAT GAA ATTATTAAG AAGTCTAATACCGAG corB 1008222 - 1009496 + | magnesium and cobalt efflux protein TERM 903 1010134 - 1010151 + G 82 -11.3 -2.56914 | overlap 1010129 TACCCACTTATGTCA TTCCCGC GAAA GCGGGAA TCCATTAATGACATA RrIowa_1286 1009489 - 1011477 + | heme chaperone--apocytochrome heme-lyase RrIowa_1289 1011958 - 1011851 - | hypothetical protein RrIowa_1292 1012446 - 1012351 - | hypothetical protein TERM 904 1013923 - 1013940 + r 74 -9.1 -2.8619 | TCGCTTTTTTCTGGA TCCCTGC CTAC GCGGGGA TGTAATAGGTTTTGA TERM 905 1013999 - 1014020 + r 100 -8.7 -5.24129 | opp_overlap 1013999 GAAAGAACAAACAAA GCCCCCTTT TTTC AAAGAGGGC TTTTTTCTGGAGGAA TERM 906 1014020 - 1013999 - R 100 -10.9 -4.82212 | opp_overlap 1013999 GAAAGAACAAACAAA GCCCCCTTT TTTC AAAGAGGGC TTTTTTCTGGAGGAA TERM 907 1014076 - 1014036 - R 73 -8.6 -3.14132 | gap 1, opp_overlap 1014044, overlap 1014040 1014044 TTTTTTCTGGAGGAA CTTATAAACTTGCTAATCG GGAG CGATTAG-AAGTTTACACG GACTTTTAGAGTACC TERM 908 1014072 - 1014040 - R 78 -10.2 -2.56596 | gap 1, opp_overlap 1014044, overlap 1014036 1014044 TTCTGGAGGAACTTA TAAACTTGCTAATCG GGAG CGATTAG-AAGTTTA CACGGACTTTTAGAG TERM 909 1014068 - 1014044 - R 71 -6.6 -3.98826 | gap 1, opp_overlap 1014044, overlap 1014040 1014036 GGAGGAACTTATAAA CTTGCTAATCG GGAG CGATTAG-AAG TTTACACGGACTTTT RrIowa_1295 1019026 - 1014062 - | outer membrane protein B TERM 910 1014833 - 1014865 + g 78 -7.2 -4.41302 | gap 1, opp_overlap 1014819 ACCGATTACGACACC GGTGGTTTTAGCT TTATAACC AGCTA-AACCACC TTTCTTACTTTGATG gidB 1019955 - 1019419 - | hypothetical protein TERM 911 1020248 - 1020224 - R 83 -10 -3.61517 | overlap 1020226 ACTGGGTCCTAAGAA GATACCGCGG TCGAG CCGCGGTATG ACATTAAATGAATAA TERM 912 1020246 - 1020226 - R 100 -12.6 -3.38812 | overlap 1020224 TGGGTCCTAAGAAGA TACCGCGG TCGAG CCGCGGTA TGACATTAAATGAAT RrIowa_1297 1021213 - 1020269 - | anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase RrIowa_1298 1021574 - 1021251 - | hypothetical protein RrIowa_1299 1022050 - 1021763 - | integration host factor alpha-subunit RrIowa_1300 1022676 - 1022197 - | hypothetical protein RrIowa_1301 1023147 - 1023617 + | thioredoxin peroxidase TERM 913 1023697 - 1023734 + T 76 -7.7 -4.0075 | gap 1, opp_overlap 1023678 1023702, overlap 1023726 TCTCAGGATATTGGA CGAGATTGCCACGCAGCC TAC GGCTGC-TCGCAATGACG TTTCATTGCTTCCAT TERM 914 1023729 - 1023702 - T 74 -9.2 -2.80443 | gap 1, opp_overlap 1023697 1023726, overlap 1023678 GGATATTGGACGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGTTTCATTGCT TERM 915 1023726 - 1023743 + T 70 -8.5 -3.20633 | opp_overlap 1023702, overlap 1023697 AGCCTACGGCTGCTC GCAATGA CGTT TCATTGC TTCCATCTATTGTGA RrIowa_1302 1024609 - 1023737 - | lipid A biosynthesis lauroyl acyltransferase TERM 916 1024590 - 1024600 + gT 76 -2.6 -5.40004 | ATTAAATATCTAAGC TTTT TTA AAAA TTTTTTCATTTAATA RrIowa_1303 1025549 - 1024584 - | tetraacyldisaccharide 4'-kinase RrIowa_1304 1026407 - 1025553 - | peptidoglycan-specific endopeptidase, M23 family TERM 917 1026265 - 1026277 + g 71 -3.3 -5.0432 | opp_overlap 1026265 TACTGTACTACTAAA TCCGC ATG GCTGA TTTTATATTTTTGTT RrIowa_1305 1027195 - 1026407 - | protein involved in external DNA uptake TERM 918 1027238 - 1027288 + H 100 -15.7 -3.87641 | gap 1, opp_overlap 1027284, overlap 1027242 ATGACCAACTCGCAC GCATG-GCTCTATGTCATTCCCGC TTTC GCAGGAATGACATAGAGCATATAC TTTATAAACCATATT TERM 919 1027242 - 1027283 + G 100 -18.9 -3.05997 | overlap 1027238 CCAACTCGCACGCAT GGCTCTATGTCATTCCCGC TTTC GCAGGAATGACATAGAGCA TATACTTTATAAACC RrIowa_1306 1027240 - 1027419 + | hypothetical protein TERM 920 1027828 - 1027863 + T 100 -13.4 -3.99436 | overlap 1027828 1027829 GTGTAGTTTAGCTTT CCGATGTCATTTTCGC GAAA GCGGGAATGACATCGA GTTTTTTATTTACTA TERM 921 1027828 - 1027864 + T 100 -13.2 -5.69793 | gap 1, overlap 1027828 1027829 GTGTAGTTTAGCTTT C-CGATGTCATTTTCGC GAAA GCGGGAATGACATCGAG TTTTTTATTTACTAT TERM 922 1027829 - 1027862 + T 100 -16.9 -2.98035 | overlap 1027828 1027828 TGTAGTTTAGCTTTC CGATGTCATTTTCGC GAAA GCGGGAATGACATCG AGTTTTTTATTTACT RrIowa_1307 1029972 - 1027903 - | NAD-dependent DNA ligase LigA TERM 923 1028262 - 1028274 + g 72 -4.9 -4.76041 | TATCACCGATTCCTT CTAAA TTG TTTAG TTTTTGATAAATATC TERM 924 1028727 - 1028711 - G 70 -8.1 -3.31144 | TCTTCAGGCGTATAA TGCAATT TAG AATTGCA TGACAGACAAAATAA TERM 925 1029735 - 1029752 + g 75 -7.1 -4.10429 | CTTGATGCGTAACTT TAGCAAA TTTA TTTGCTA TTTTAGCCCCTACTT RrIowa_1308 1031344 - 1030259 - | queuine tRNA-ribosyltransferase RrIowa_1309 1031985 - 1032284 + | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase RrIowa_1312 1033984 - 1033697 - | proline/betaine transporter TERM 926 1035005 - 1034978 - R 81 -9.2 -3.6806 | opp_overlap 1034972, overlap 1034979 ACAGAGTTATTTAAA GCTCGGTTTAGA GTTA CCTAAACCGAGA GATAAATTATTACTT TERM 927 1035004 - 1034979 - R 100 -12.7 -2.80354 | opp_overlap 1034972, overlap 1034978 CAGAGTTATTTAAAG CTCGGTTTAGA GTTA CCTAAACCGAG AGATAAATTATTACT RrIowa_1315 1035305 - 1035015 - | hypothetical protein RrIowa_1316 1035468 - 1035346 - | hypothetical protein RrIowa_1317 1035617 - 1035477 - | hypothetical protein RrIowa_1318 1035761 - 1035648 - | hypothetical protein TERM 928 1035870 - 1035892 + r 73 -9.2 -2.6989 | opp_overlap 1035871, overlap 1035867 TTAAACAATAAAAAA ACCGAATCTA AAC TAGATTCGGC TAAATTTAATGATTT TERM 929 1035891 - 1035871 - R 100 -12.7 -6.01369 | opp_overlap 1035870 1035867 TAAACAATAAAAAAA CCGAATCTA AAC TAGATTCGG CTAAATTTAATGATT ttg2C 1036374 - 1035925 - | toluene transport system protein RrIowa_1320 1036694 - 1036395 - | hypothetical protein TERM 930 1036626 - 1036600 - G 76 -7.5 -3.91716 | GGACGCCCTAAATAA TCAATATTACG GCTTT CATAATATTGA TTCAAAAACTCATCT RrIowa_1321 1037149 - 1036682 - | ribonuclease H TERM 931 1036723 - 1036735 + g 73 -7.7 -3.85817 | TAGCAGTTTCTCTTC CTTGC ACT GCAAG TTTATCGGCAGCAAT RrIowa_1322 1037622 - 1037149 - | hypothetical protein TERM 932 1037542 - 1037552 + g 73 -4 -5.11112 | ATCCCAATATAAATT TTCA TGC TGAA TTTTTGTTAGAATTT TERM 933 1039019 - 1039007 - g 83 -7.7 -4.67755 | opp_overlap 1039006 AGATTTACGTAAAAA TCCTC ATG GAGGA GTATTAGTAAAAATA RrIowa_1323 1038402 - 1039214 + | hypothetical protein TERM 934 1039706 - 1039686 - g 78 -7 -4.44819 | overlap 1039680 CACAAGAGAGCAAAA TAGCAAAA GCAGA TTTTGCTA TAAATAGCGGCGTTG RrIowa_1324 1039208 - 1039783 + | dephospho-CoA kinase RrIowa_1325 1039771 - 1040460 + | DNA polymerase III subunit epsilon TERM 935 1040492 - 1040543 + F 81 -8.2 -4.2828 | gap 1, opp_overlap 1040488, overlap 1040493 GGAGAGGCAAAGCCT CGA-CGTGGCAATCTCAGGAATT TTATATT ATTTCATGAGATTGCCACGCTCC TTTTAGTCGCTCGCA TERM 936 1040493 - 1040542 + F 93 -11.7 -3.16647 | gap 1, opp_overlap 1040488, overlap 1040492 GAGAGGCAAAGCCTC GA-CGTGGCAATCTCAGGAATT TTATATT ATTTCATGAGATTGCCACGCTC CTTTTAGTCGCTCGC RrIowa_1326 1040587 - 1041309 + | cytochrome c oxidase assembly protein Surf1 TERM 937 1041348 - 1041313 - f 93 -8.3 -5.10004 | gap 1, overlap 1041315 AAAAATAATTAAAAA GACTG-GACCCCGTGG TCAAG CCACGGGGTAACAGTA GAAAATCGATACATA TERM 938 1041346 - 1041315 - f 100 -10.9 -4.12448 | gap 1, overlap 1041313 AAATAATTAAAAAGA CTG-GACCCCGTGG TCAAG CCACGGGGTAACAG TAGAAAATCGATACA TERM 939 1041641 - 1041621 - g 75 -9.7 -2.71144 | CACTTTTCTTAATGA GCGGCAATA AGC CATCGCCGC AAGACACAGAAAACG TERM 940 1043026 - 1043012 - g 82 -8.6 -4.01158 | AATCTGATCAAAGAA CTTAGC AAA GCTAAG CTTAAAGTTGAGGTA RrIowa_1327 1041365 - 1043833 + | ATP-dependent nuclease subunit A RrIowa_1328 1044126 - 1043950 - | hypothetical protein TERM 941 1044405 - 1044417 + r 72 -6.3 -4.23218 | opp_overlap 1044404 AAGCTTGTAATTCAT GAACA TTT TGTTC TATTTTTTCATAATT RrIowa_1329 1044882 - 1044568 - | hypothetical protein TERM 942 1045466 - 1045440 - g 73 -8.8 -3.15364 | overlap 1045428 1045438 1045437 ACAGCAGCAAAACTA CTGCATATACGT AGT ACATCTATGCAG GAAGCATGTCCTGAA RrIowa_1330 1045092 - 1046036 + | malonyl-CoA-[acyl-carrier-protein] transacylase RrIowa_1331 1046146 - 1046343 + | hypothetical protein RrIowa_1332 1046379 - 1046687 + | hypothetical protein RrIowa_1333 1046897 - 1047211 + | hypothetical protein TERM 943 1047302 - 1047316 + F 76 -8.6 -3.52896 | overlap 1047290 1047289 AGTGGCCGAAGGCGG CGGTTT GCT AAACCG TTATATGGGTCATAC TERM 944 1047691 - 1047701 + F 85 -2.6 -5.86061 | overlap 1047690 AGGGATTGGAGGACT TTTT GTA AAAA TTTTTTTTAATAGAA RrIowa_1335 1047782 - 1048063 + | hypothetical protein TERM 945 1049123 - 1049110 - T 72 -5.3 -4.81083 | TCGAATGAGTAAAAA GTTGT AGAC ACAAC AGGTATGACCATACA RrIowa_1339 1049461 - 1049165 - | hypothetical protein TERM 946 1049355 - 1049365 + g 73 -4 -5.08015 | TTTATCCGGTCAATT TCTT CTG AAGA TTTATTTTTTAGCTT RrIowa_1340 1049937 - 1049788 - | hypothetical protein TERM 947 1049957 - 1049943 - R 73 -5.8 -4.63218 | CCTCTTTCAATAAAA GTTATT TAA AATAAC TTAAACTTTATTATA RrIowa_1343 1050864 - 1050739 - | hypothetical protein RrIowa_1344 1051087 - 1050890 - | poly-beta-hydroxybutyrate polymerase RrIowa_1345 1051946 - 1051179 - | poly-beta-hydroxybutyrate polymerase TERM 948 1051490 - 1051477 - G 77 -3.1 -5.4251 | CTTATATAGAAAAAA TGAGA AAAA TCCCA CGAGCAGGTAAGTAA TERM 949 1052899 - 1052919 + G 73 -9.1 -2.83692 | overlap 1052898 1052902 1052908 TAGTTCAAGTATCCA CGACAATTG TGG CAATTGTTG CTATTATTTGTTGTT TERM 950 1053704 - 1053682 - g 77 -5 -5.14163 | overlap 1053686 ATGCAGTAAGAAAAA TATATTTTGA ATA TCAAAAAATA GCATAAAATAAATTA RrIowa_1346 1052211 - 1053710 + | ADP,ATP carrier protein TERM 951 1053796 - 1053772 - T 73 -8.6 -3.14881 | overlap 1053760 1053774 1053790 CAAGTCTGTGACCAA GATACCGTGG TCAAG CCACGGTATG ACACCGAACGCGTTT TERM 952 1053794 - 1053774 - T 91 -11.2 -3.13522 | overlap 1053760 1053772 1053790 AGTCTGTGACCAAGA TACCGTGG TCAAG CCACGGTA TGACACCGAACGCGT RrIowa_1347 1054575 - 1054021 - | phosphohydrolase (MutT/nudix family protein) TERM 953 1054848 - 1054873 + G 77 -6.1 -4.78237 | opp_overlap 1054851 GGAATTTATGTGATA GCAGGTGATTT ACTT AAATCTCCGGC TTTTCTTCTCAAATG RrIowa_1348 1054776 - 1055000 + | hypothetical protein RrIowa_1349 1055952 - 1055053 - | hemolysin TERM 954 1055508 - 1055521 + g 77 -5.3 -5.00616 | overlap 1055502 GAGCTGCAATTATAT GCTTA CGTA TAAGC TTTTTTAAACGACCG TERM 955 1055844 - 1055857 + g 72 -2.5 -5.24129 | overlap 1055844 TATCGGGCGTTTTTG TTTTT CTAA AAAAA TTTTTTATCGGAGAG TERM 956 1055945 - 1055955 + g 91 -2.6 -6.01187 | TCTTTTTTTGAAGAT TTTA ACA TAAA TTTTTTTATTTAGTT RrIowa_1350 1056472 - 1055969 - | putative metalloprotease RrIowa_1351 1056615 - 1056499 - | hypothetical protein RrIowa_1352 1058046 - 1057156 - | lipoyl synthase RrIowa_1353 1059301 - 1058039 - | serine hydroxymethyltransferase TERM 957 1059398 - 1059437 + r 70 -6.4 -4.08948 | gap 1, opp_overlap 1059379 1059397 1059398 TCTCATACCAAAATC CTGAGATTGCCACGCAGCC TAC GGCTGC-TCGCAATGACGG TTATTTATAAAATTA RrIowa_1354 1060066 - 1059416 - | carboxylesterase TERM 958 1059756 - 1059732 - G 73 -8.7 -3.22906 | opp_overlap 1059732 1059736, overlap 1059731 GTACCTTGAGAAAAG CCAATAATGAT AGT ATCTTTATTGG TTAGATTTAACTCGT TERM 959 1059732 - 1059756 + g 73 -8.7 -3.29591 | opp_overlap 1059732 1059731, overlap 1059736 GTACCTTGAGAAAAG CCAATAATGAT AGT ATCTTTATTGG TTAGATTTAACTCGT RrIowa_1355 1060557 - 1060222 - | glutaredoxin RrIowa_1356 1060595 - 1061227 + | endonuclease III RrIowa_1357 1061417 - 1061244 - | hypothetical protein TERM 960 1061481 - 1061501 + r 71 -4.7 -4.76087 | AAGTTTAGTCATTAT CCTCAATAA GTT TTATAGGGG TTTGTTTATTATCTA RrIowa_1358 1061841 - 1061470 - | hypothetical protein RrIowa_1359 1062020 - 1061829 - | hypothetical protein RrIowa_1360 1062459 - 1062172 - | hypothetical protein RrIowa_1361 1062631 - 1062518 - | hypothetical protein TERM 961 1062628 - 1062642 + g 76 -2.9 -5.43974 | AAGATAGTGCTTCTT TCAAT TGATC ATTGA TTTTTCTTTCATTTT RrIowa_1362 1062830 - 1063024 + | entericidin B-like protein RrIowa_1363 1063737 - 1063096 - | hypothetical protein RrIowa_1364 1063910 - 1063746 - | hypothetical protein TERM 962 1063925 - 1063940 + r 74 -3.3 -5.48825 | ATAAATCTTTATTTC TCTTC TACTCC GAAGA TTTTTTTAAATGCTA RrIowa_1365 1064904 - 1064059 - | tetrapyrrole (corrin/porphyrin) methylase family protein TERM 963 1065433 - 1065417 - g 75 -8.1 -3.82604 | opp_overlap 1065416 TTACGCAAGTAACAA CCATAAA GAT TTTATGG CATTATTACCTAAAG RrIowa_1366 1064929 - 1066047 + | hypothetical protein TERM 964 1066107 - 1066135 + T 100 -12.6 -3.14261 | gap 1 TACGAATGTTCAGGA TG-TCATTCCCGC GGAA GCGGGAATGAACA TTGAGTAGGTTTTTC tatA 1066369 - 1066208 - | twin argininte translocase protein A RrIowa_1368 1066450 - 1067049 + | phosphatidylglycerophosphatase A RrIowa_1369 1067138 - 1067455 + | 50S ribosomal protein L21 RrIowa_1370 1067480 - 1067740 + | 50S ribosomal protein L27 TERM 965 1067870 - 1067886 + F 72 -6.7 -4.14739 | opp_overlap 1067864 1067863 AAAAATAATTTAAAG TACTAAT ATT ATTAGTA TTTTAAGCTGGATCC RrIowa_1371 1068024 - 1069229 + | aspartate kinase RrIowa_1372 1069512 - 1070006 + | hypothetical protein TERM 966 1070104 - 1070090 - g 78 -7.8 -4.26634 | opp_overlap 1070103 AAAATAACTTCAAAA CGACCA AAA TGGCCG ACAACACTGCCGTTT RrIowa_1373 1070015 - 1070326 + | hypothetical protein romA 1070411 - 1070662 + | outer membrane protein RrIowa_1375 1070761 - 1070883 + | hypothetical protein RrIowa_1376 1070963 - 1071064 + | hypothetical protein RrIowa_1377 1071826 - 1071197 - | hypothetical protein RrIowa_1378 1073193 - 1071886 - | major facilitator transporter TERM 967 1072210 - 1072198 - G 70 -2 -5.31275 | TGCTATCACAAAAAA TACA CTTGC TGTA ATAGTACATATAAAT RrIowa_1379 1073772 - 1073455 - | hypothetical protein RrIowa_1380 1074122 - 1073775 - | hypothetical protein RrIowa_1381 1074482 - 1074129 - | transcriptional regulator RrIowa_1382 1079240 - 1074486 - | NAD-specific glutamate dehydrogenase TERM 968 1074620 - 1074664 + g 71 -3.1 -5.15167 | opp_overlap 1074623 1074627 1074631, overlap 1074623 1074627 1074631 TATTATTATAATTAT CAATCCATAAATCTAAATCAA TAG TTGTTTTAGATTTATTAATTA TTTTTATTAATAATC TERM 969 1074623 - 1074661 + g 72 -4.8 -4.66002 | opp_overlap 1074623 1074627 1074631, overlap 1074620 1074627 1074631 TATTATAATTATCAA TCCATAAATCTAAATCAA TAG TTGTTTTAGATTTATTAA TTATTTTTATTAATA TERM 970 1074657 - 1074627 - G 75 -10 -2.59035 | opp_overlap 1074623 1074620 1074627 1074631, overlap 1074623 1074631 ATAATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 971 1074627 - 1074657 + g 83 -10 -3.78633 | opp_overlap 1074627 1074623 1074631, overlap 1074623 1074620 1074631 ATAATTATCAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 972 1074631 - 1074653 + g 74 -6.4 -4.43642 | opp_overlap 1074631 1074627 1074623, overlap 1074627 1074623 1074620 TTATCAATCCATAAA TCTAAATCAA TAG TTGTTTTAGA TTTATTAATTATTTT TERM 973 1078613 - 1078629 + g 74 -5.3 -4.67755 | opp_overlap 1078615, overlap 1078608 CTTTAAAATTTAATT TATAATT ATC AATTATA TTTTTAGATAAATCT TERM 974 1080325 - 1080313 - g 83 -6.3 -4.84262 | CAATAATTAATAAAA TCGAT TTA ATCGA AGCTAGTAAAATCTT TERM 975 1080426 - 1080416 - g 72 -2.6 -5.2422 | AAGTATATTAAAAAA TATT GAA AATA TTGCCGAAAATATGG RrIowa_1383 1079322 - 1080659 + | tRNA modification GTPase TrmE TERM 976 1081268 - 1081249 - g 72 -5.1 -4.66833 | GTGTAATTGGAAAAA CATTGAA CAATCT TTCAATG AGTCCCCAAATGATT RrIowa_1384 1081052 - 1082353 + | hypothetical protein TERM 977 1082494 - 1082513 + T 71 -7.8 -3.49086 | overlap 1082484 CAAAACTGATGTAAT CCTCGACT TCAC GGTCGGGG TTATAATAGTTATGT RrIowa_1385 1083226 - 1082987 - | hypothetical protein RrIowa_1386 1083374 - 1083240 - | hypothetical protein RrIowa_1387 1083726 - 1083463 - | multidrug resistance protein B RrIowa_1388 1083914 - 1083801 - | hypothetical protein RrIowa_1389 1084098 - 1083844 - | hypothetical protein TERM 978 1083970 - 1083982 + gH 71 -3.4 -5.06816 | opp_overlap 1083970 AACAATAATTACTAA TGCA ATAGG TGCA TTTTTATTAAAAAAT RrIowa_1390 1084513 - 1084656 + | hypothetical protein recA 1084766 - 1085854 + | recombinase A RrIowa_1392 1085847 - 1086572 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 979 1086585 - 1086608 + F 82 -6.2 -5.31275 | opp_overlap 1086577 1086585, overlap 1086577 1086592 1086593 TAAAAATTAATAAGA TTATTTTGTG CTAG CATAAAATAA TTTTTTGTGCTAGAA TERM 980 1086713 - 1086685 - f 71 -4.6 -4.70515 | opp_overlap 1086691, overlap 1086693 1086703 TACAGTTAAAATAAA GTCTAATAGCTG AATAA CCGCTATTATAC AGCATATAAAATTAA RrIowa_1393 1086736 - 1086996 + | acyl carrier protein TERM 981 1087292 - 1087277 - g 74 -6.2 -4.48333 | overlap 1087289 ATAGACTAAGTAAAA TGGATA AATT TATCCA TTACGGAGTAGCAGC RrIowa_1394 1087030 - 1088316 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 982 1088464 - 1088447 - f 76 -9.9 -2.68071 | overlap 1088443 1088444 1088459 TTTAACTTAAAGTCA TTCCTGC GAAA GCAGGAA TCCAGTAAAACATAT TERM 983 1088498 - 1088475 - f 81 -8.4 -4.31379 | opp_overlap 1088475 AGGAATCCAGTAAAA CATATAAAAA CTTA TTTTTATATG TTTATTCTATCAAAT TERM 984 1088475 - 1088498 + F 85 -8.4 -4.39329 | opp_overlap 1088475 AGGAATCCAGTAAAA CATATAAAAA CTTA TTTTTATATG TTTATTCTATCAAAT TERM 985 1089517 - 1089496 - g 76 -7.5 -4.06182 | opp_overlap 1089495 1089496, overlap 1089494 TTAGTTATAAAAATA CTAAAATTA TTGA TAATTTTAG CTTTCGTGTAAAAAA RrIowa_1395 1088598 - 1090379 + | ABC transporter ATP-binding protein uup RrIowa_1396 1090447 - 1091526 + | hypothetical protein TERM 986 1091599 - 1091583 - g 100 -10.9 -6.09888 | CCTGAACAAAAAAAA GCAGCTT TAG AAGCTGC AAAAGTACAATTTGA RrIowa_1397 1091544 - 1091774 + | hypothetical protein TERM 987 1091790 - 1091821 + T 93 -11.8 -3.12352 | opp_overlap 1091795, overlap 1091795 CATTATATAACATTC TAAAAGCTGTAACT ATAT AGTTGCAGCTTTTG TATCATTTTGAATTA TERM 988 1091816 - 1091795 - T 77 -7.3 -4.20712 | opp_overlap 1091790 1091795 TATAACATTCTAAAA GCTGTAACT ATAT AGTTGCAGC TTTTGTATCATTTTG TERM 989 1091795 - 1091816 + T 100 -9.5 -4.6709 | opp_overlap 1091795, overlap 1091790 TATAACATTCTAAAA GCTGTAACT ATAT AGTTGCAGC TTTTGTATCATTTTG RrIowa_1398 1092956 - 1091802 - | ATPase TERM 990 1093028 - 1093018 - R 83 -3.2 -5.76237 | opp_overlap 1093027, overlap 1093019 TATAGAAAGAAAAAA CGAC AAA GTCA AAACGCTTTGTCTCG RrIowa_1399 1093715 - 1093026 - | guanylate kinase TERM 991 1093713 - 1093723 + g 70 -4 -4.9448 | TTTATTTTTTGTTGT CATA TTT TATG TTTTATTTCGTAGGT TERM 992 1093842 - 1093854 + r 76 -7.7 -4.02856 | AGTCATGCAAAATTC GCTTG TAT CAAGC TTTATGAATTATTCT RrIowa_1400 1094092 - 1093856 - | hypothetical protein TERM 993 1094214 - 1094245 + r 88 -9 -4.4195 | opp_overlap 1094217, overlap 1094217 GGCAAAAATCTAGTA AAACCATATAAAAA CAAG TTTTTATATGGTTA TTTTATCAAATATAT TERM 994 1094242 - 1094217 - R 100 -10.7 -4.35675 | opp_overlap 1094214 1094217 AAAAATCTAGTAAAA CCATATAAAAA CAAG TTTTTATATGG TTATTTTATCAAATA TERM 995 1094217 - 1094242 + r 100 -10.7 -4.32067 | opp_overlap 1094217, overlap 1094214 AAAAATCTAGTAAAA CCATATAAAAA CAAG TTTTTATATGG TTATTTTATCAAATA mreC 1095283 - 1094444 - | rod shape-determining protein mreB 1096326 - 1095286 - | rod shape-determining protein RrIowa_1403 1097625 - 1096537 - | hypothetical protein TERM 996 1098024 - 1098004 - R 91 -5.4 -5.98781 | TATAAGTAAAAAAAA GGCCAAGT AGTAA ACTCGACC TTTTAGGATACTATA RrIowa_1405 1098521 - 1098054 - | peptidoglycan-associated lipoprotein RrIowa_1406 1098737 - 1099006 + | putative cytoplasmic protein RrIowa_1407 1099952 - 1098996 - | 3-oxoacyl-(acyl carrier protein) synthase III RrIowa_1408 1100160 - 1099960 - | 50S ribosomal protein L32 RrIowa_1409 1100256 - 1100729 + | SmpA/OmlA family lipoprotein TERM 997 1101503 - 1101481 - g 84 -6.4 -5.19275 | opp_overlap 1101467, overlap 1101467 ATCGATAAAACAAAA TATCGATATA CTT TTTATCGATA CAGCAGGTAGGCTTC ftsY 1100933 - 1101844 + | cell division protein TERM 998 1102011 - 1102001 - f 78 -4 -5.34655 | TAATTAAAAATAAAA TCAT AAA ATGA CTCAAAAAAATACCT RrIowa_1411 1102008 - 1104635 + | DNA polymerase I RrIowa_1414 1105156 - 1105491 + | S-adenosylmethionine synthetase TERM 999 1105471 - 1105482 + F 75 -5.8 -4.83615 | opp_overlap 1105471 1105470 AAATACCTAATTAAT CCGA CGGG TCGG TTTTTATAGGCGGTC RrIowa_1415 1105675 - 1105932 + | S-adenosylmethionine synthetase RrIowa_1416 1106000 - 1106242 + | hypothetical protein TERM 1000 1106406 - 1106394 - g 77 -3.5 -5.52909 | GAACAGTTAAAAAAA TTTTT AGA AAAAA CTACAGATGAAATAT RrIowa_1417 1106304 - 1106564 + | hypothetical protein RrIowa_1418 1106737 - 1106979 + | hypothetical protein RrIowa_1419 1110761 - 1107216 - | DNA polymerase III subunit alpha TERM 1001 1107265 - 1107247 - G 100 -9.6 -4.28049 | opp_overlap 1107247 1107246 TTTAAAATCTCAAAA TCTTGCCC TTG GAGCAAGA ATTTTTCAGGTAATG TERM 1002 1108184 - 1108208 + g 85 -8.6 -4.25074 | overlap 1108186 TTGCACCCGCGATGT TATACCGTGG CTTGA CCACGGTATC TTTTGAAATTTCCTG TERM 1003 1108186 - 1108206 + g 90 -11.2 -3.71804 | overlap 1108184 GCACCCGCGATGTTA TACCGTGG CTTGA CCACGGTA TCTTTTGAAATTTCC TERM 1004 1110319 - 1110346 + g 74 -9.2 -3.05046 | gap 1, opp_overlap 1110317, overlap 1110318 CGTGCAAACAGCATC GCTTGCT-CCTCG TTG CGAGCTAGCAAGC ATTTTCCGACAATAC TERM 1005 1110872 - 1110851 - R 100 -13.1 -4.11295 | overlap 1110841 GTAAAGCGAGATAAA TATTCCCGC CTAC GCGGGAATA ACATCGGAAGCCTTA RrIowa_1420 1112195 - 1110897 - | UDP-glucose 6-dehydrogenase TERM 1006 1111653 - 1111629 - G 76 -7.9 -4.05714 | opp_overlap 1111629 1111630 1111632, overlap 1111630 ATCGGTAACCACAAA CTTTGCACCTT GTA AAGGTGCATAA ATTTTTCGCAATATT TERM 1007 1111652 - 1111630 - G 74 -9.2 -3.02946 | opp_overlap 1111629 1111630 1111632, overlap 1111629 TCGGTAACCACAAAC TTTGCACCTT GTA AAGGTGCATA AATTTTTCGCAATAT TERM 1008 1111632 - 1111650 + g 84 -11.8 -2.84171 | opp_overlap 1111630 1111629, overlap 1111630 1111629 GGTAACCACAAACTT TGCACCTT GTA AAGGTGCA TAAATTTTTCGCAAT RrIowa_1421 1112419 - 1112216 - | hypothetical protein TERM 1009 1113218 - 1113206 - g 77 -3.5 -5.43487 | opp_overlap 1113206 1113207, overlap 1113199 1113207 AAATTAGATAAAAAA TTTTT TAA AAAAA ATATTTTAGTAGAAG TERM 1010 1113590 - 1113564 - g 73 -7.4 -3.77832 | overlap 1113566 CGGCAAATTCAATAA TAGAGCTAATAA TTC CTATTAGCCCCA ATATCCCTAATAGCT TERM 1011 1114041 - 1114030 - g 71 -3 -5.05228 | opp_overlap 1114030 ATTAAATGATAAAAA TTTC GATA GAAA TATTGTATTTAACCT RrIowa_1422 1112444 - 1114954 + | hypothetical protein TERM 1012 1115171 - 1115135 - g 100 -10.5 -4.42653 | opp_overlap 1115145, overlap 1115145 ACGGTATCCAGAAAA CAACTAAAAATACTAAC AAT ATTAGTATTTTTAACTG GGGCCTGCTACAAAC TERM 1013 1115161 - 1115145 - g 76 -4.5 -5.07971 | opp_overlap 1115145, overlap 1115135 GAAAACAACTAAAAA TACTAAC AAT ATTAGTA TTTTTAACTGGGGCC TERM 1014 1115275 - 1115289 + G 76 -4.3 -5.18357 | opp_overlap 1115275 AATAATAATAGAATA TTCTG TAAAT CAGAA TTTTTTACTGGATTG ampG.4 1114981 - 1116633 + | AmpG TERM 1015 1116851 - 1116832 - g 85 -8.6 -4.25283 | gap 1 AGTGTTTTATTAAAA CCGCTT-GC TAA GCTAAGCGG TGATACGGTACGAAA tatC 1116700 - 1117455 + | Sec-independent protein translocase protein TERM 1016 1118436 - 1118424 - g 80 -2.7 -5.75342 | overlap 1118425 1118435 TTGCGGCAAAAAAAA CCTAT GAT ATAGA AGTATGGCTTCCGGG RrIowa_1425 1117433 - 1118710 + | seryl-tRNA synthetase RrIowa_1426 1118755 - 1118970 + | hypothetical protein virB4.2 1119055 - 1121487 + | VirB4 ATPase TERM 1017 1121551 - 1121541 - f 74 -3.2 -5.34208 | AAAAAAAATTAAAAA GGAC TGG ATCC CGCTACAAGCTCGTG TERM 1018 1121844 - 1121834 - g 76 -6.8 -4.63218 | CTCCTTGGAATAAAA GCGA CGG TCGC AATAATGATACTTGT RrIowa_1428 1121623 - 1125111 + | hypothetical protein terC 1125116 - 1126021 + | tellurium resistance protein RrIowa_1430 1126065 - 1126775 + | heat resistant agglutinin RrIowa_1431 1126861 - 1128525 + | methyltransferase TERM 1019 1128602 - 1128616 + G 77 -10 -2.99259 | overlap 1128599 1128604 ATTTATTGATTCTCC TACGCC AAT GGCGTA TAATTATTATGAGTA RrIowa_1432 1128568 - 1128807 + | hypothetical protein TERM 1020 1128869 - 1128888 + G 72 -5.8 -4.37886 | gap 1, opp_overlap 1128868 TACAATGAAAATATG CCGG-TATT TTT AATAACCGG TTTTATAAAAAGTAA RrIowa_1433 1128866 - 1129294 + | transcriptional repressor TERM 1021 1129457 - 1129473 + G 77 -5.9 -4.7173 | GTGCAGGGCTTATGA TTTTGCT TGG AGCAGAA TTTTTAGCTATGATG RrIowa_1434 1129327 - 1129944 + | NADH dehydrogenase subunit J RrIowa_1435 1129937 - 1130251 + | NADH dehydrogenase subunit K RrIowa_1436 1130242 - 1132224 + | NADH dehydrogenase subunit L TERM 1022 1132279 - 1132315 + F 71 -6.7 -3.99898 | AACGTAAAGAGCGTG GCAATCTCATGAAAT AATAACA AATTCCTGAGATTGC TTTGTCAATTACTTC TERM 1023 1133011 - 1133023 + G 76 -6.3 -4.46926 | overlap 1133014 GATAATATTCCATTA TTTGC TCA GCAAA TTTTATGGTGGGCTA TERM 1024 1133505 - 1133517 + G 80 -4.8 -5.37345 | AGCAAGTAAAATGCC GGTG CTTGC CACC TTTTTTATGATTGCA RrIowa_1437 1132378 - 1133859 + | NADH dehydrogenase subunit M TERM 1025 1134209 - 1134175 - f 71 -7.9 -3.50111 | overlap 1134173 1134177 TATTAAAAAGCAACA GATGTCACACCGTAG TCAAG CTACGGTATGACAAG GACATGCTATCACTT TERM 1026 1134207 - 1134177 - f 100 -14.9 -3.30457 | overlap 1134175 1134173 TTAAAAAGCAACAGA TGTCACACCGTAG TCAAG CTACGGTATGACA AGGACATGCTATCAC RrIowa_1438 1134213 - 1134788 + | cytochrome c biogenesis protein CcmA TERM 1027 1135282 - 1135262 - T 79 -8.4 -4.00469 | opp_overlap 1135262 1135259 TGAAGAGTAATTAAA CGAGTATA TTACC TATACTCG TAATCTTTGTGTAGT RrIowa_1439 1135749 - 1135270 - | NADH dehydrogenase subunit I TERM 1028 1135816 - 1135843 + r 74 -9.2 -2.80443 | gap 1, overlap 1135834 1135836 GATACCGAGTTGTCA TTGCGA-GCAGCC GTA GGCTGCGTGGCAA TCTCGTCAAATATCC RrIowa_1440 1136951 - 1135932 - | NADH dehydrogenase subunit H TERM 1029 1137031 - 1137015 - R 80 -2.1 -5.66684 | opp_overlap 1137017, overlap 1137017 1137019 TAATTTACAAAAAAA GAGCTGG ATT CCCGCTT TTGCAGGAATGACAT RrIowa_1441 1139103 - 1137073 - | NADH dehydrogenase subunit G RrIowa_1442 1139447 - 1139091 - | hypothetical protein RrIowa_1443 1142252 - 1139616 - | aconitate hydratase TERM 1030 1141566 - 1141578 + g 74 -9.1 -3.06815 | AGGTTGACCTAGCAT GGCAG CTT CTGCC TCTATTCCGCCGACT RrIowa_1444 1142772 - 1142434 - | F0F1 ATP synthase subunit epsilon TERM 1031 1142827 - 1142790 - R 71 -5.8 -4.45723 | gap 2, overlap 1142782 1142791 1142793 AATAATATAGTAAAA TTACTACGTCATTCCCGC CTAC GCGGGAATGACAT--CAA CGTCACTTCAACGTT TERM 1032 1142826 - 1142793 - R 100 -12.5 -3.17875 | overlap 1142782 1142790 1142791 AATATAGTAAAATTA CTACGTCATTCCCGC CTAC GCGGGAATGACATCA ACGTCACTTCAACGT RrIowa_1445 1144329 - 1142830 - | F0F1 ATP synthase subunit beta TERM 1033 1144171 - 1144183 + g 73 -7.7 -3.76778 | AGCATTTAAAATTTC CGGTA ACT TACCG TTATTCGTAAATTTT RrIowa_1446 1145395 - 1144424 - | F0F1 ATP synthase subunit gamma TERM 1034 1145436 - 1145474 + r 77 -9.6 -2.9462 | opp_overlap 1145435, overlap 1145437 GCGAGGAACGAAACT TTGTTGCAATCTCAGGCA ACA TTCCTGAGATTGCCACGC TCCTTTCAGTCACTC RrIowa_1447 1147211 - 1145529 - | F0F1 ATP synthase subunit alpha TERM 1035 1146952 - 1146964 + g 80 -9.1 -3.68073 | TAAATTTGGGCTATA CCGTC ACC GACGG TTATTACCTGCCCTA RrIowa_1448 1147781 - 1147227 - | F0F1 ATP synthase subunit delta TERM 1036 1147750 - 1147724 - G 73 -8.8 -3.24747 | overlap 1147727 1147729 CTTGTATATTATCAA CTATAGCGTTAT TAA ATAACGCTACTG CATAATTCTTGATTA TERM 1037 1147747 - 1147727 - G 83 -11.3 -2.80988 | overlap 1147724 1147729 GTATATTATCAACTA TAGCGTTAT TAA ATAACGCTA CTGCATAATTCTTGA TERM 1038 1147745 - 1147729 - G 73 -9.5 -2.94962 | overlap 1147727 1147724 ATATTATCAACTATA GCGTTAT TAA ATAACGC TACTGCATAATTCTT RrIowa_1449 1149324 - 1147945 - | dihydrolipoamide dehydrogenase TERM 1039 1148876 - 1148886 + g 71 -6.8 -4.08767 | ATTTGTTTACCGTCA GGCT TAA AGCC TTTTAAAACCCTAGA TERM 1040 1149434 - 1149398 - R 83 -11 -2.9294 | opp_overlap 1149402, overlap 1149402 CACAGCATCGACACA GCAATCTCAGGAATCA TACAC TATCTCCTGAGATTGC TACGCTCCTTTCAGT RrIowa_1450 1149907 - 1149479 - | ferroxidase RrIowa_1451 1150104 - 1150364 + | hypothetical protein TERM 1041 1150541 - 1150514 - f 84 -9.4 -3.83844 | gap 1, opp_overlap 1150515, overlap 1150508 TGCAGCAACTAATAA CCCTATTACTATA GGT TATAGTAA-AGGG TGCAAAATATTTGAG RrIowa_1452 1150575 - 1150778 + | hypothetical protein RrIowa_1453 1151543 - 1151241 - | beta-lactamase OXA-18 precursor RrIowa_1454 1151954 - 1151682 - | beta-lactamase RrIowa_1455 1154602 - 1152230 - | multimodular transpeptidase-transglycosylase PBP 1A RrIowa_1456 1155943 - 1154606 - | tRNA 2-methylthioadenosine synthase RrIowa_1457 1156205 - 1156315 + | hypothetical protein RrIowa_1462 1157359 - 1157216 - | hypothetical protein RrIowa_1463 1157548 - 1157399 - | hypothetical protein RrIowa_1464 1157982 - 1157629 - | hypothetical protein RrIowa_1465 1158766 - 1158287 - | hypothetical protein kefC 1160495 - 1158759 - | glutathione-regulated potassium-efflux system protein TERM 1042 1159918 - 1159928 + g 81 -8.2 -4.11394 | opp_overlap 1159918 1159917 AATATTGTAAGTAAG GCCG TTA CGGC TTTTAAGAGTGCAAT RrIowa_1467 1160809 - 1160483 - | iojap superfamily protein bolA.2 1160965 - 1161204 + | BolA TERM 1043 1161290 - 1161344 + F 85 -8.3 -4.64657 | gap 1, opp_overlap 1161305 1161308 1161311, overlap 1161301 1161305 ATATAGTAATGCTAT TCGGTGTGTAATTAAGAATAAGGATT TTAA AATCCTTATTCTTAATTG-ATGCGGG TTTTTAGAAGTTTAC TERM 1044 1161301 - 1161334 + F 100 -15.7 -3.1883 | opp_overlap 1161305 1161308 1161311, overlap 1161290 1161305 CTATTCGGTGTGTAA TTAAGAATAAGGATT TTAA AATCCTTATTCTTAA TTGATGCGGGTTTTT TERM 1045 1161330 - 1161305 - f 95 -12.1 -3.33696 | opp_overlap 1161301 1161290 1161305, overlap 1161308 1161311 TCGGTGTGTAATTAA GAATAAGGATT TTAA AATCCTTATTC TTAATTGATGCGGGT TERM 1046 1161305 - 1161330 + F 95 -12.1 -3.40073 | opp_overlap 1161305 1161308 1161311, overlap 1161301 1161290 TCGGTGTGTAATTAA GAATAAGGATT TTAA AATCCTTATTC TTAATTGATGCGGGT TERM 1047 1161327 - 1161308 - f 74 -8 -3.81146 | opp_overlap 1161305 1161301 1161290, overlap 1161305 1161311 GTGTGTAATTAAGAA TAAGGATT TTAA AATCCTTA TTCTTAATTGATGCG RrIowa_1471 1162866 - 1163057 + | hypothetical protein RrIowa_1473 1164036 - 1163881 - | hypothetical protein RrIowa_1474 1164633 - 1164313 - | outer membrane protein A RrIowa_1475 1164927 - 1164643 - | outer membrane protein A TERM 1048 1165087 - 1165099 + r 76 -7.7 -3.9644 | CCTATAGTACCGTTA GTACC TCC GGTAC TTGTTATATTACCGG TERM 1049 1165266 - 1165256 - R 82 -4 -5.626 | opp_overlap 1165256 GAGTGGAGAAAAAAA TTTG ATC CAAA CTTTGATCCTATAGC RrIowa_1479 1167305 - 1167063 - | hypothetical protein RrIowa_1480 1168068 - 1167826 - | hypothetical protein RrIowa_1481 1168371 - 1168535 + | hypothetical protein RrIowa_1483 1168784 - 1168999 + | translation initiation factor IF-1 TERM 1050 1169410 - 1169399 - g 74 -3 -5.38047 | opp_overlap 1169399 CAGTTAGACAAAAAA TAGT TCAG ACTA TTGTTAAGTTCAAAA maf 1169011 - 1169658 + | Maf-like protein TERM 1051 1169687 - 1169701 + T 70 -4.4 -4.96501 | opp_overlap 1169687 TTAAAAATACTAAAA TTATTA ATA TAATAA TTTGTTTTTCTAGAC RrIowa_1485 1170229 - 1169792 - | DnaK suppressor protein RrIowa_1486 1171308 - 1170391 - | site-specific tyrosine recombinase XerC RrIowa_1487 1171619 - 1171768 + | hypothetical protein RrIowa_1488 1172418 - 1171816 - | phospholipase D TERM 1052 1172267 - 1172304 + g 72 -2.9 -5.37865 | gap 1, overlap 1172270 1172270 1172273 GAAAGCTCTGAAATA TTGTAATGCTTTATTTGC AGA GCAGATAAAGC-TAATGA TTTTTTACTTATTAG RrIowa_1489 1172710 - 1172567 - | hypothetical protein RrIowa_1490 1173016 - 1172888 - | poly(3-hydroxyalkanoate) polymerase RrIowa_1491 1174615 - 1173137 - | 3-polyprenyl-4-hydroxybenzoate decarboxylase TERM 1053 1174656 - 1174683 + r 75 -9.2 -2.93164 | gap 1 CTTATTTTATCGTCA TTGCGA-GCAGCC ATA GGCTGCGTGGCAA TCTCATTAAATATCC RrIowa_1492 1176336 - 1174762 - | peptidyl-prolyl cis-trans isomerase TERM 1054 1174848 - 1174858 + g 80 -2.6 -5.66684 | overlap 1174842 CAGAATTTTTAATAT TATA TAT TATA TTTTTTTCTGAATTG TERM 1055 1176479 - 1176503 + r 100 -14.5 -5.73339 | opp_overlap 1176479 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTTTTATGATTAT TERM 1056 1176503 - 1176479 - R 100 -14.5 -5.42514 | opp_overlap 1176479 TTATAAAGCAAAAAA GCCTATATAGT CAA ACTATATAGGC TTTTTTTATGATTAT RrIowa_1493 1181728 - 1176530 - | outer membrane protein A TERM 1057 1178610 - 1178590 - G 75 -6.9 -4.18494 | opp_overlap 1178594 TACTTGCACCTAAAA CTATTAACG TAC CGTTATTAG TACCGCCGGTATTTT RrIowa_1494 1182405 - 1181854 - | outer membrane protein A TERM 1058 1182159 - 1182194 + g 71 -7.4 -3.60214 | AATTGTTTTGAGGAC CGCCAGCAGGAGTACC ATTA GCTACCCCTGCAGCCG TTATCTCATTCCAAT RrIowa_1495 1182991 - 1182896 - | hypothetical protein TERM 1059 1182942 - 1182956 + g 80 -7.2 -4.4648 | opp_overlap 1182955, overlap 1182955 TCACCGGCATATATT GCTTTT TGT AAAAGC TTTTGTCCTAAAGCT ftsK 1185400 - 1183166 - | cell division protein TERM 1060 1184916 - 1184901 - G 75 -4.8 -4.90079 | opp_overlap 1184901 1184896, overlap 1184896 ATCTTAATAATAAAA TTACTT AAAG AAGTAA ATTTAATTTCAAATA TERM 1061 1184970 - 1184960 - G 72 -2.6 -5.25805 | AATAAAGGTAAAAAA TATT AAT AATA AGTATAGTTGATTTG RrIowa_1497 1186437 - 1185568 - | hypothetical protein TERM 1062 1186863 - 1186850 - g 71 -6.7 -4.14056 | opp_overlap 1186850 ATTCCAAACGATAAA CCGTT AAAA AACGG TGATATAGTAAATAT RrIowa_1498 1186598 - 1187377 + | methionine aminopeptidase radC.1 1187628 - 1187939 + | DNA repair protein radC.2 1187944 - 1188312 + | DNA repair protein TERM 1063 1188452 - 1188438 - g 81 -9.2 -3.77808 | opp_overlap 1188438 1188438 1188440 CTCATGATAAGATAA CACCGC GCG GCGGCG GTCTTGCTATTGTAG RrIowa_1501 1188299 - 1189282 + | putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RrIowa_1502 1189279 - 1189602 + | hypothetical protein TERM 1064 1189687 - 1189704 + T 85 -11.3 -2.78816 | GCTCAGTTTATGTCA TTCCCGC AGAA GCGGGAA TCTAGTAAAACATCA TERM 1065 1190053 - 1190016 - T 84 -8.7 -4.21945 | gap 1, opp_overlap 1190024, overlap 1190024 ACCAAGACATACAAA CA-AAAAAAGGAGCCCTT AAT AAAGACTCCTTTTTCGTG TTAATAGCTTGTAAA TERM 1066 1190044 - 1190024 - T 100 -8.3 -6.04953 | opp_overlap 1190024, overlap 1190016 ATACAAACAAAAAAA GGAGCCCTT AAT AAAGACTCC TTTTTCGTGTTAATA RrIowa_1503 1190824 - 1190084 - | hypothetical protein TERM 1067 1190439 - 1190452 + g 71 -3.1 -5.0917 | overlap 1190435 CCGTTAAGTAATACA CTTAC AATA GTAGG TTTATTTTTTACTGA TERM 1068 1191006 - 1191026 + r 89 -11.9 -2.78906 | opp_overlap 1191008, overlap 1191003 1191002 1191008 TTTTTTATTTCTAGA TACCGTGGT TAA GCCACGGTA TGATATTAGGTTATT TERM 1069 1191008 - 1191024 + r 77 -10.1 -2.93236 | opp_overlap 1191008, overlap 1191006 1191003 1191002 TTTTATTTCTAGATA CCGTGGT TAA GCCACGG TATGATATTAGGTTA TERM 1070 1191024 - 1191008 - R 74 -9.4 -2.88544 | opp_overlap 1191006 1191003 1191002 1191008 TTTTATTTCTAGATA CCGTGG TTAAG CCACGG TATGATATTAGGTTA RrIowa_1504 1191750 - 1191067 - | hypothetical protein TERM 1071 1191554 - 1191582 + g 71 -5.3 -4.54727 | opp_overlap 1191560 1191561, overlap 1191555 ATATAATAACCGATA CCTAAAGCAACTG GAA CAGTTGTATTAGA TTTTAATTTAACACC TERM 1072 1191555 - 1191581 + g 73 -8.8 -3.32354 | opp_overlap 1191560 1191561, overlap 1191554 TATAATAACCGATAC CTAAAGCAACTG GAA CAGTTGTATTAG ATTTTAATTTAACAC TERM 1073 1191788 - 1191801 + r 72 -2.5 -5.35354 | TATCTTAATGGCATA TATAA CATA TTATA TTTTTTAGTTCTATA TERM 1074 1191894 - 1191944 + r 100 -11 -4.27584 | gap 1, opp_overlap 1191900 1191902, overlap 1191895 ATGTAGTTAATTCAT GTATAAGATTTT-GAATGAATAG GATTAA CTATTCATTCAAAAATCTTATAA TTTTCGCTTAAAAAT TERM 1075 1191895 - 1191943 + r 100 -14.5 -3.16068 | gap 1, opp_overlap 1191900 1191902, overlap 1191894 TGTAGTTAATTCATG TATAAGATTTT-GAATGAATAG GATTAA CTATTCATTCAAAAATCTTATA ATTTTCGCTTAAAAA TERM 1076 1191938 - 1191900 - R 80 -10 -3.3785 | gap 1, opp_overlap 1191895 1191894, overlap 1191902 TTAATTCATGTATAA GATTTT-GAATGAATAG GATTAA CTATTCATTCAAAAATC TTATAATTTTCGCTT TERM 1077 1191935 - 1191902 - R 100 -12.8 -3.25668 | opp_overlap 1191895 1191894, overlap 1191900 AATTCATGTATAAGA TTTTGAATGAATAG GATTAA CTATTCATTCAAAA ATCTTATAATTTTCG RrIowa_1505 1192326 - 1191976 - | ferredoxin RrIowa_1506 1193023 - 1192331 - | heme chaperone heme-lyase RrIowa_1507 1193544 - 1193038 - | tRNA-specific adenosine deaminase RrIowa_1508 1194445 - 1193525 - | CzcD TERM 1078 1195026 - 1195009 - g 77 -3.4 -5.4593 | overlap 1195024 GGAAAACAACAAAAA GCATAC GGTAAT GCATGC CGCCAACCTGACGGA RrIowa_1509 1194583 - 1195062 + | 17 kDa common-antigen RrIowa_1510 1195193 - 1195462 + | ATP/GTP binding protein znuC 1195772 - 1196473 + | high-affinity zinc uptake system ATP-binding protein RrIowa_1512 1196722 - 1196570 - | hypothetical protein RrIowa_1513 1196915 - 1196691 - | hypothetical protein RrIowa_1514 1197259 - 1197167 - | hypothetical protein RrIowa_1515 1197554 - 1197240 - | hypothetical protein TERM 1079 1197706 - 1197742 + r 70 -4 -4.96996 | TGATTTACTAATTCT TTAAATCATTTTTAGT TATCT GCTGAAAATCATTTAA TTTATTTTCTTTAAG TERM 1080 1197749 - 1197759 + r 72 -4 -5.16472 | ATCATTTAATTTATT TTCT TTA AGAA TTTTTTGCAGTTTTT RrIowa_1516 1198040 - 1197753 - | hypothetical protein TERM 1081 1197858 - 1197843 - G 77 -4.8 -5.15117 | TAAAATTTGAAAAAA TTCTAA TGTT TTAGAA GACAATGTTTTTGGT TERM 1082 1197891 - 1197901 + g 70 -4 -4.84146 | opp_overlap 1197882 1197891, overlap 1197882 ATTAAATTGAAAACT CAAT TCT ATTG TTTCTTTTGTATCAT RrIowa_1517 1198459 - 1198178 - | hypothetical protein TERM 1083 1198338 - 1198351 + g 89 -6.7 -5.72053 | TTTTCTTTTGGATCA CTAGC TTTC GCTAG TTTTTTGTTTAATTG RrIowa_1518 1201498 - 1198631 - | excinuclease ABC subunit A TERM 1084 1199464 - 1199488 + g 76 -7.9 -4.05747 | overlap 1199465 GAAATACTTTGCTAG TTGGCTCTAAA TGC TTTAGAGCCGC TTTATATAGAGTATG TERM 1085 1199465 - 1199487 + g 84 -11.4 -3.02966 | overlap 1199464 AAATACTTTGCTAGT TGGCTCTAAA TGC TTTAGAGCCG CTTTATATAGAGTAT TERM 1086 1200090 - 1200104 + g 82 -4.3 -5.43974 | TTGAGTATACGCTCA GCAAT AAATA ATTGC TTTTTATTTAATTTT RrIowa_1519 1201597 - 1202055 + | single-strand DNA-binding protein RrIowa_1520 1202193 - 1202897 + | hypothetical protein RrIowa_1521 1202938 - 1203231 + | proline/betaine transporter RrIowa_1522 1203539 - 1203399 - | lysozyme RrIowa_1523 1203746 - 1203609 - | hypothetical protein RrIowa_1524 1204122 - 1203724 - | hypothetical protein TERM 1087 1204612 - 1204638 + G 76 -9.6 -2.82623 | opp_overlap 1204612, overlap 1204609 TTCTTCTTCACATCA GGCTTTACTT AGTTTTA AAGTAAAGCC TAATTCTAAACAAAA TERM 1088 1204638 - 1204612 - g 75 -9.6 -2.62184 | opp_overlap 1204612 1204609 TTCTTCTTCACATCA GGCTTTACTT AGTTTTA AAGTAAAGCC TAATTCTAAACAAAA RrIowa_1526 1204574 - 1204891 + | hypothetical protein TERM 1089 1205098 - 1205119 + G 93 -8.9 -4.83169 | AATTTAATGATTCAC TCTCTTTAT AGTA ATAAAGAGA TTTTTATGAGGGAGT TERM 1090 1206706 - 1206689 - g 72 -4.9 -4.68511 | TTGAACAGAAACAAA TAGCTAA TGCC TCAGCTA AAAATCTAGAGTTAA TERM 1091 1206729 - 1206711 - g 70 -4.6 -4.65895 | overlap 1206713 TGCCTCAGCTAAAAA TCTAGAGT TAA ACCCTAAA AATAAAATCATAGAG htpG 1205035 - 1206900 + | heat shock protein 90 RrIowa_1528 1207044 - 1208321 + | 5-aminolevulinate synthase TERM 1092 1208415 - 1208399 - f 72 -8.1 -3.31144 | overlap 1208402 CCGTCATTGCGAGAA GAATTAC GTA GTAATTC GACGAAGCAATTCAG TERM 1093 1208452 - 1208438 - f 75 -4.3 -5.18357 | opp_overlap 1208431 1208438 CAATTCAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT TERM 1094 1208438 - 1208452 + F 88 -4.3 -5.73672 | opp_overlap 1208438, overlap 1208431 CAATTCAGTAAAAAA TTCTG TAAAT CAGAA TTTTTTTAATTATTT TERM 1095 1208753 - 1208732 - f 77 -4.5 -5.20154 | opp_overlap 1208732 1208734 1208743 ATATAATTTAAAAAA TAGTTGTAT TTTT ATACCACTA TAATATTAATTTTTT RrIowa_1529 1209227 - 1209520 + | hypothetical protein RrIowa_1530 1209539 - 1209706 + | hypothetical protein TERM 1096 1210616 - 1210590 - g 76 -7.5 -4.07885 | gap 1 TACTTTTCCTGAAAA TTACCATGCTAA AGAT TTAGCA-GGTAA GGATGCTCGTTTTGT TERM 1097 1210658 - 1210645 - g 71 -6.7 -4.16182 | GTAGTACAAATTAAA GCAGT ACAT ACTGC AGAACCTACCGTTAT RrIowa_1531 1209928 - 1211265 + | trigger factor cgtA 1212457 - 1211369 - | GTPase ObgE RrIowa_1533 1213777 - 1212470 - | type II citrate synthase RrIowa_1534 1214057 - 1213908 - | hypothetical protein TERM 1098 1214029 - 1214063 + g 84 -11.6 -3.00003 | opp_overlap 1214036 1214053, overlap 1214027 1214029 GCTATACCTCCTCTT GCTATAATGGCTTCTT TTA AAACAGCCATTATAGC TCATTATTATGATCC RrIowa_1535 1214182 - 1214087 - | hypothetical protein RrIowa_1536 1215205 - 1214420 - | uracil DNA glycosylase superfamily protein TERM 1099 1215447 - 1215436 - g 70 -4.4 -4.74706 | CTGAAGAGCTAAAAA TTGC AGCA GCAA ATGTAGCACTTGATA RrIowa_1537 1215222 - 1216163 + | ribosomal large subunit pseudouridine synthase D TERM 1100 1216205 - 1216173 - f 85 -8.1 -4.49337 | opp_overlap 1216173 1216191 TTATAATTGACAAAA TATTAATCCTTAATA TTA TATTAAAAATTAATA TTTATTTATAAAATG RrIowa_1538 1216448 - 1216660 + | hypothetical protein RrIowa_1539 1216811 - 1216996 + | hypothetical protein RrIowa_1540 1217005 - 1218579 + | bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase RrIowa_1541 1221426 - 1219480 - | glycyl-tRNA synthetase subunit beta TERM 1101 1220677 - 1220648 - G 74 -2.4 -5.5454 | gap 2, overlap 1220651 TCAAATAAACAAAAA TATTTC-T-GATGC GTAC GCATCGAAGAAATA AGTACTTCTTTAGGT RrIowa_1542 1222337 - 1221471 - | glycyl-tRNA synthetase subunit alpha stbB 1222775 - 1222392 - | plasmid stability protein RrIowa_1544 1223017 - 1222772 - | hypothetical protein RrIowa_1545 1223733 - 1223104 - | putative cytoplasmic protein TERM 1102 1223630 - 1223616 - G 80 -2.8 -5.74122 | GATTATAGAAAAAAA GCATAA ACT TAATGC CGGTATCGATCATTT RrIowa_1547 1224648 - 1224701 + | hypothetical protein TERM 1103 1224818 - 1224804 - T 70 -5.6 -4.22883 | overlap 1224806 TATTACCGAAAATAA TACCGC CGA GCGGTC GTACTACAAAGCCTA TERM 1104 1224816 - 1224806 - T 74 -8.2 -3.70622 | overlap 1224804 TTACCGAAAATAATA CCGC CGA GCGG TCGTACTACAAAGCC TERM 1105 1225179 - 1225195 + T 72 -8.1 -3.31461 | overlap 1225182 CTGGATTGCTTCGTC GAATTAC TGC GTAATTC TTCTCGCAATGACTA RrIowa_1549 1226165 - 1225215 - | hypothetical protein RrIowa_1550 1226810 - 1226175 - | hypothetical protein TERM 1106 1226843 - 1226884 + r 83 -10.3 -3.4724 | overlap 1226835 1226836 1226845 1226846 ATTAGTGCCGTTGCA TGGTTTATGTCATTCCCGC CTAC GTGGGAATGACATGGAATA TTACGTTTTATTATC TERM 1107 1226845 - 1226882 + r 87 -10.7 -3.28907 | overlap 1226843 1226836 1226846 TAGTGCCGTTGCATG GTTTATGTCATTCCCGC CTAC GTGGGAATGACATGGAA TATTACGTTTTATTA TERM 1108 1226846 - 1226881 + r 100 -14.2 -2.5626 | overlap 1226845 1226843 1226836 AGTGCCGTTGCATGG TTTATGTCATTCCCGC CTAC GTGGGAATGACATGGA ATATTACGTTTTATT RrIowa_1551 1228456 - 1226885 - | hypothetical protein RrIowa_1552 1228654 - 1231287 + | alanyl-tRNA synthetase RrIowa_1553 1232224 - 1231487 - | tRNA pseudouridine synthase A TERM 1109 1232238 - 1232262 + r 81 -10 -3.48276 | overlap 1232240 ATAATAGCCCACTGT CATCCCGTGG CTTGA CCACGGGATC TTGTATCACAGCCCG TERM 1110 1232240 - 1232260 + r 100 -12.6 -3.31726 | overlap 1232238 AATAGCCCACTGTCA TCCCGTGG CTTGA CCACGGGA TCTTGTATCACAGCC rpoD 1234224 - 1232320 - | RNA polymerase sigma factor RpoD TERM 1111 1233174 - 1233152 - G 70 -7 -3.83437 | opp_overlap 1233144 1233152, overlap 1233150 1233153 TCATTAACTAAAAGA CCGGTTTTAG ATT CTATAACCGA TAATTCAGCAATCAT TERM 1112 1233448 - 1233471 + g 70 -2 -5.36314 | gap 1, opp_overlap 1233454, overlap 1233451 TTCCGAAACTTCATT TATTAATAATT CCA AATTATTA-TA TTTTTTGCTATTTTG TERM 1113 1233451 - 1233469 + g 72 -6.2 -4.27753 | opp_overlap 1233454, overlap 1233448 CGAAACTTCATTTAT TAATAATT CCA AATTATTA TATTTTTTGCTATTT RrIowa_1555 1236056 - 1234269 - | DNA primase TERM 1114 1235918 - 1235892 - G 76 -3.8 -5.25799 | AAAACAATAGAAAAA TCTCTTACTATT ACT AACCGTAAAAGA TGGGGTCTTTTCTTG RrIowa_1556 1236675 - 1236061 - | cytidylyltransferase family protein TERM 1115 1236781 - 1236735 - H 71 -7.6 -3.39286 | gap 3, overlap 1236733 1236738 ACATCATTGCAAACA GTATTC-G--ATGTCATGCCTGC TTTC GCAGGCATGACATAACAGAATCC GCTTAGACAAGGACC TERM 1116 1236775 - 1236738 - H 89 -12.1 -2.85297 | overlap 1236735 1236733 TCATTGCAAACAGTA TTCGATGTCATGCCTGC TTTC GCAGGCATGACATAACA GAATCCGCTTAGACA greA 1236804 - 1237424 + | transcription elongation factor GreA RrIowa_1558 1237980 - 1237582 - | NAD(P) transhydrogenase alpha subunit RrIowa_1559 1239101 - 1237977 - | NAD(P) transhydrogenase alpha subunit TERM 1117 1238466 - 1238454 - G 74 -6.3 -4.41348 | opp_overlap 1238453 1238454 TTCCGGTGAAACAAA CTTAG CTC CTAAG CTTTCTACCTGCTCT RrIowa_1560 1239177 - 1239815 + | hypothetical protein TERM 1118 1240160 - 1240181 + G 75 -7.3 -4.11371 | opp_overlap 1240160 1240159 1240162 TATACTATTTTAAAC GATAGGCTC GCCG GAGGCTATC TTTTAACAGGTATTA RrIowa_1561 1240037 - 1241566 + | DNA polymerase III subunits gamma and tau RrIowa_1562 1241586 - 1241909 + | hypothetical protein RrIowa_1563 1242069 - 1241923 - | hypothetical protein RrIowa_1564 1242267 - 1242118 - | hypothetical protein RrIowa_1565 1242589 - 1242395 - | hypothetical protein RrIowa_1566 1243482 - 1242787 - | retroviral aspartyl protease family protein TERM 1119 1243135 - 1243115 - G 70 -3.9 -4.99035 | opp_overlap 1243116, overlap 1243116 GCATTGATATAAAAA TGCCCGT CTCTGCT ACGGGCT ATAATAATTTCTCCG TERM 1120 1243134 - 1243116 - G 71 -7.4 -3.58698 | opp_overlap 1243116, overlap 1243115 CATTGATATAAAAAT GCCCGT CTCTGCT ACGGGC TATAATAATTTCTCC RrIowa_1567 1243761 - 1243543 - | hypothetical protein RrIowa_1568 1243977 - 1243786 - | hypothetical protein TERM 1121 1244189 - 1244202 + r 71 -2.4 -5.40474 | overlap 1244199 CATTGCCCGGGTTTA CAAC TAGCTT GTTG TTTTTTTAGCAACGT RrIowa_1569 1244488 - 1244327 - | hypothetical protein TERM 1122 1244498 - 1244510 + r 78 -3.4 -5.54079 | TTGCAATTGCTCCTC CTTG TAATT CAAG TTTTTTAGTTTTTGC relB.3 1244935 - 1244684 - | RelB RrIowa_1571 1245850 - 1245128 - | hypothetical protein RrIowa_1572 1246618 - 1245854 - | metal-dependent hydrolase RrIowa_1573 1246633 - 1247280 + | PAP2 family phosphoesterase RrIowa_1574 1247374 - 1247637 + | DNA-damage-inducible protein J yafQ 1247728 - 1247871 + | DNA damage inducible protein TERM 1123 1248200 - 1248220 + G 83 -11.3 -2.75311 | overlap 1248196 TATTTATTCTGTTAC CGGTAATAA TGG TTATTACCG TGATCTATATCTATA RrIowa_1576 1247980 - 1249089 + | hypothetical protein RrIowa_1577 1249559 - 1249095 - | DNA polymerase III subunit chi TERM 1124 1249557 - 1249571 + g 77 -5.8 -4.72201 | AATACTAAATTGCTG CATAAA AAT TTTATG TTATTTTTTATGAGA TERM 1125 1249725 - 1249764 + r 71 -8 -3.40597 | opp_overlap 1249736, overlap 1249717 1249724 1249726 1249736 GGCCTTGTTGCATGG ATTCTATGTAATTCCTGC CTCT GCAGGAATTACATCAAAG TATTTCCATCAAAAA TERM 1126 1249726 - 1249763 + r 85 -11.5 -2.64144 | opp_overlap 1249736, overlap 1249717 1249725 1249724 1249736 GCCTTGTTGCATGGA TTCTATGTAATTCCTGC CTCT GCAGGAATTACATCAAA GTATTTCCATCAAAA TERM 1127 1249736 - 1249753 + r 78 -9.9 -3.06679 | opp_overlap 1249736, overlap 1249726 1249725 1249724 ATGGATTCTATGTAA TTCCTGC CTCT GCAGGAA TTACATCAAAGTATT TERM 1128 1249753 - 1249736 - R 78 -9.9 -3.06915 | opp_overlap 1249736 1249726 1249725 1249724 ATGGATTCTATGTAA TTCCTGC CTCT GCAGGAA TTACATCAAAGTATT RrIowa_1579 1250907 - 1249759 - | succinyl-diaminopimelate desuccinylase RrIowa_1580 1251162 - 1250908 - | type I restriction-modification system specificity subunit RrIowa_1581 1251856 - 1251662 - | hypothetical protein RrIowa_1582 1252360 - 1251902 - | type I restriction-modification system methylation subunit RrIowa_1583 1253179 - 1253000 - | hypothetical protein RrIowa_1584 1253455 - 1253294 - | hypothetical protein nhaA 1253625 - 1254425 + | Na+/H+ antiporter RrIowa_1586 1255056 - 1254541 - | hypothetical protein RrIowa_1587 1255682 - 1255053 - | lipoyltransferase RrIowa_1588 1256422 - 1255679 - | anhydro-N-acetylmuramyl-tripeptide amidase-like protein TERM 1129 1255804 - 1255818 + g 72 -5.8 -4.30978 | TTATAATATCTTTCA TTTTAG AGT CTAAAA TTTTGGTAACTTCAA TERM 1130 1256537 - 1256521 - R 72 -8.1 -3.31144 | overlap 1256524 TCGTCATTGCGAGAA GAATTAC ACA GTAATTC GACGAAGCAATCTCA TERM 1131 1256607 - 1256580 - R 74 -9.2 -2.80113 | gap 1, opp_overlap 1256575, overlap 1256544 TATTATTTCATGAGA TTGCCACGCAGCC TAC GGCTGC-TCGCAA TGACGATTTGGTATC TERM 1132 1256848 - 1256828 - R 86 -9.7 -3.82097 | GTCAAATTTACTAAA TCCCGCAAT CAA ATAGCGGGA GATGACAGGGGCTGA RrIowa_1590 1257250 - 1256915 - | 30S ribosomal protein S16 RrIowa_1591 1257437 - 1257267 - | 50S ribosomal protein L33 mutL 1259490 - 1257658 - | DNA mismatch repair protein RrIowa_1593 1259650 - 1259498 - | hypothetical protein TERM 1133 1260242 - 1260228 - g 82 -8.6 -4.01419 | TAGTAAGGAATCAAA TAGCAG ATA CTGCTA AAGCTAGACATATAA RrIowa_1594 1260155 - 1260421 + | D-beta-hydroxybutyrate dehydrogenase RrIowa_1595 1260727 - 1261179 + | hypothetical protein TERM 1134 1261346 - 1261373 + T 95 -11.6 -3.76815 | opp_overlap 1261349, overlap 1261349 TTAATATGTACGTTA TAATAGTCATAA TTTA TTATGACTATTA TTTAGCCTTTTGCAT TERM 1135 1261349 - 1261370 + T 82 -8.9 -4.00411 | opp_overlap 1261349, overlap 1261346 ATATGTACGTTATAA TAGTCATAA TTTA TTATGACTA TTATTTAGCCTTTTG TERM 1136 1261370 - 1261349 - T 74 -8.9 -3.33671 | opp_overlap 1261349 1261346 ATATGTACGTTATAA TAGTCATAA TTTA TTATGACTA TTATTTAGCCTTTTG RrIowa_1596 1261862 - 1261371 - | TPR repeat-containing protein RrIowa_1597 1261963 - 1263237 + | hypothetical protein TERM 1137 1263666 - 1263649 - g 83 -4.9 -5.42259 | overlap 1263650 TTATCCGGAAAAAAA CGAAACT GTAA AGTTTCA TGCAGCTTTTAAAGA RrIowa_1598 1263221 - 1264060 + | coproporphyrinogen III oxidase TERM 1138 1264078 - 1264102 + T 91 -11.5 -3.09983 | opp_overlap 1264078, overlap 1264084 TTTTTAAAATCATAA CCGGAATGGCA AAA TGCTATTTCGG TGTGTTGAAACTTTT RrIowa_1602 1265731 - 1265294 - | hypothetical protein RrIowa_1603 1266651 - 1265743 - | ferrochelatase TERM 1139 1266222 - 1266246 + g 72 -2.9 -5.38326 | opp_overlap 1266223, overlap 1266215 1266223 CGTGAGCAGAAAATA ATATACGAAAA TTT TTATCGTATAG TTTTTCTTTAATTAA TERM 1140 1266245 - 1266223 - G 74 -6.4 -4.35042 | opp_overlap 1266222 1266215 1266223 GTGAGCAGAAAATAA TATACGAAAA TTT TTATCGTATA GTTTTTCTTTAATTA RrIowa_1604 1267780 - 1266740 - | uroporphyrinogen decarboxylase TERM 1141 1267080 - 1267099 + g 77 -5.8 -4.71222 | opp_overlap 1267080 1267083 GGAAAAGCAATTATA GGAGTTTT TGGA AAAACTTC TTTTACTTTTAGTAT TERM 1142 1267200 - 1267210 + g 71 -5.4 -4.53774 | opp_overlap 1267198 1267200 AAAAGCTTTAAAACA TCTG CTC CAGA TTTTGCTTGATTTAT TERM 1143 1267286 - 1267297 + g 74 -3 -5.25656 | AGCAAGTATTTTATT TTCA TATA TGAA TTTTTTGCTCGTTTT TERM 1144 1267505 - 1267517 + g 75 -4.9 -4.88918 | TTTGAATTGCTTTAA TATAG GCC CTATA TTTTCTTTAAAATCC