TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.694851 %AT, 817546 nt, 4917 terms. Intergenic: 0.755092 %AT, H2T: 201270 nt, 1805 terms; T2T: 62131 nt, 1131 terms; H2H: 49879 nt, 928 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|51473215|ref|NC_006142.1| Rickettsia typhi str. Wilmington, complete genome (length 1111496) RT0001 1 - 822 + | hypothetical protein TERM 1 931 - 906 - f 95 -12.1 -3.55457 | overlap 909 TGAGAAAAAACTGAA TAATCTCATGT TACA ACATGAGATTA CAATACTTCTTGGAT TERM 2 928 - 909 - f 86 -9.4 -3.87569 | overlap 906 GAAAAAACTGAATAA TCTCATGT TACA ACATGAGA TTACAATACTTCTTG trxA 984 - 1301 + | thioredoxin wzt 1312 - 2070 + | O-antigen export system ATP-binding protein TERM 3 2096 - 2075 - g 75 -7.5 -4.17701 | TTCATAAATGATAAA GTATTTTTT TTCT AAAAAATAC TGGCGGGCAATAGCA wzm 2067 - 2843 + | O-antigen export system permease protein TERM 4 5799 - 5782 - g 75 -7.1 -4.13183 | AAAAGTTAAAGGAAA GCAAAAA TATA TTTTTGC ATGTAGCGGGCAGAA RT0005 2840 - 5896 + | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase lpxA 6801 - 6007 - | UDP-N-acetylglucosamine acyltransferase fabZ 7248 - 6811 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 5 7122 - 7135 + g 72 -5.3 -4.76644 | CTGTAAACTGCGGTT CGTTA ACGG TAACG TTTTTAATACCTGTT lpxD 8469 - 7429 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 6 10066 - 10042 - g 79 -5 -5.27938 | gap 1, overlap 10043 ACTGGTAAAGAAAAA CCTGCTCC-CT CTAT AGCGGAGCAGC TAGATATAATAATAA TERM 7 10065 - 10043 - g 77 -8.5 -3.75678 | gap 1, overlap 10042 CTGGTAAAGAAAAAC CTGCTCC-CT CTAT AGCGGAGCAG CTAGATATAATAATA RT0010 9295 - 10278 + | NifR3-like protein TERM 8 10791 - 10816 + G 74 -3.3 -5.40474 | overlap 10792 ACAATTGATATGTGT CCTTCTTCCAA AAAC TTTGAAGAAGA TTTTTTTAAAAAGCT TERM 9 11024 - 11044 + G 72 -7 -4.11394 | overlap 11013 ACTTGAAAATAATTT TCTTCTTT CTAAT AAAGAAGA TTTTGAAAATGAAGT RT0011 10275 - 11348 + | hypothetical protein RT0012 11848 - 11414 - | hypothetical protein znuA 12741 - 11836 - | zinc/manganese ABC transporter substrate binding protein pcnB 13901 - 12738 - | NTP polymerase. TERM 10 14588 - 14605 + H 77 -7.1 -4.46267 | opp_overlap 14588 TTACATAATTATTAA GCAATAT TAAT ATATTGC TTTTCATTAACTTAT sca1 14663 - 18055 + | 190 kDa antigen precursor TERM 11 18114 - 18094 - T 86 -9.1 -4.41548 | GGATATTGTATAAAA CTTCTAACT TAT AGTCAGAAG TCAGTCATAGCCACG ruvC 20106 - 19633 - | Holliday junction resolvase era 21052 - 20165 - | GTP-binding protein Era rnc 21728 - 21045 - | ribonuclease III TERM 12 21072 - 21083 + g 93 -5.8 -5.81032 | opp_overlap 21072 TAGTCTATGTAATAA GCAG CGTG CTGC TTTTTTTTCAGCTTC lepB 22522 - 21728 - | leader peptidase I nuoF 23976 - 22711 - | NADH dehydrogenase I subunit F TERM 13 24014 - 24002 - R 77 -7.7 -4.15565 | GTTATGACTTTAAAA GCTCA TGT TGAGC GAAGGTAAAGCAATA secF 25072 - 24146 - | preprotein translocase subunit SecF RT0023 25145 - 25381 + | hypothetical protein rplS 25942 - 25526 - | 50S ribosomal protein L19 trmD 26663 - 25959 - | tRNA (guanine-N(1)-)-methyltransferase TERM 14 26262 - 26249 - G 70 -5.3 -4.57353 | opp_overlap 26249 CTCCACCAGATAAAA TGTAG TCAC CTACA CTAATTTCTTTAACA ackA 28237 - 27080 - | acetokinase pta 29288 - 28239 - | phosphate acetyltransferase RT0028 33143 - 29679 - | VirB6-like protein of the type IV secretion system TERM 15 29893 - 29911 + g 83 -3.2 -5.82281 | ACATCAGCATTAAAA TTATTGAG CTC TTCAGTAA TTTTTTTGTCTATTT RT0029 35928 - 33268 - | VirB6-like protein of the type IV secretion system TERM 16 33631 - 33607 - G 71 -7.3 -3.75461 | opp_overlap 33607 33610, overlap 33610 TAAAGCCGTAGTAAA CAATACTAAGA AAG TATTAGTATTG TTATTAAAAATATTC TERM 17 34400 - 34414 + g 74 -5 -4.90013 | GAACCTTTAGCTATA TTCTGT ACT GCAGAA TTTTTAATTAACTTA TERM 18 36014 - 35989 - R 73 -7.7 -3.80573 | opp_overlap 35989 TTTATTACGAGGAAA TGACGTAAGTA ATTG TACTTATGTCA TTTAAGGAGTTTTTG TERM 19 35989 - 36014 + r 89 -9.9 -3.61889 | opp_overlap 35989 TTTATTACGAGGAAA TGACGTAAGTA ATTG TACTTATGTCA TTTAAGGAGTTTTTG RT0030 39005 - 36090 - | VirB6-like protein of the type IV secretion system RT0031 41033 - 39009 - | VirB6-like protein of the type IV secretion system TERM 20 39160 - 39188 + g 74 -2.4 -5.53991 | gap 1, opp_overlap 39166, overlap 39173 CCTTGTGCATGTACT GAAGAAGCA-TCC TGCA GGAATGCTGCTCC TTTTTTTACTAAATC RT0032 44427 - 41020 - | VirB6-like protein of the type IV secretion system TERM 21 43907 - 43921 + g 100 -7.2 -6.34616 | GGCTTACCTCTATAT GGAATA TGA TATTCC TTTTTTTTATTTTCC virB4a 46963 - 44546 - | VirB4 protein precursor virB3 47423 - 47136 - | type IV secretory system protein VirB3 engB 48742 - 48098 - | GTPase EngB rpmE 49444 - 49208 - | 50S ribosomal protein L31 rpmB 49734 - 49441 - | 50S ribosomal protein L28 TERM 22 50699 - 50661 - R 100 -12.8 -4.58424 | opp_overlap 50666 TACGATCAGATAAAA TAATATTACTACCTAACT ATA AACCAGGTAGTAATATTA AGAAATTATGAATAC RT0039 51268 - 51017 - | hypothetical protein TERM 23 51062 - 51046 - G 73 -3.7 -5.1963 | opp_overlap 51049, overlap 51049 GTGAAGCAATAAAAA TAGGTAC GAT GTACTTA TAAGTAAAATATGCA mkl 52028 - 51270 - | ribonucleotide ABC transporter ATP-binding protein TERM 24 51657 - 51672 + g 86 -2.6 -6.08342 | gap 1, opp_overlap 51654, overlap 51654 AACAGAATTAAGCTT TGCACCT GCA AGGT-CA TTTTTTTCTTTCTTG RT0041 52813 - 52034 - | ABC transporter permease protein alr 54178 - 52970 - | alanine racemase TERM 25 54844 - 54856 + r 78 -6.3 -5.07053 | ATCTACTAAGATTTA CATGA AGA TCATG TTTTTTAAAGTGCTT RT0043 55555 - 54956 - | hypothetical protein TERM 26 55226 - 55194 - G 71 -7.1 -3.82083 | gap 1, opp_overlap 55195, overlap 55195 TCAGTAGAACTTAAA GGGCGAACA-CCTA CTATTT TAGGATGTTCGCCT TTATAATCTTTTATT TERM 27 55225 - 55195 - G 78 -10.6 -2.88768 | gap 1, opp_overlap 55195, overlap 55194 CAGTAGAACTTAAAG GGCGAACA-CCTA CTATTT TAGGATGTTCGCC TTTATAATCTTTTAT TERM 28 55195 - 55225 + g 95 -10.6 -4.14615 | gap 1, opp_overlap 55195 55194 CAGTAGAACTTAAAG GGCGAACA-CCTA CTATTT TAGGATGTTCGCC TTTATAATCTTTTAT vacJ 56330 - 55575 - | lipoprotein precursor RT0045 57345 - 56335 - | hypothetical protein aatA 57571 - 58770 + | aspartate aminotransferase RT0047 58889 - 59545 + | hypothetical protein TERM 29 60181 - 60167 - g 73 -5.8 -4.58685 | AAACTTGGCTAAAAA GAAAAA AGT TTTTTC AGCTTATCATAAAAA waaA 59542 - 60930 + | 3-deoxy-D-manno-octulosonic-acid transferase TERM 30 61849 - 61861 + T 74 -4.9 -5.13344 | opp_overlap 61842 61849, overlap 61842 61853 CTATACAACAACAAA TACTT ACA AAGTA TTTTTGTATTAATAT tsf 62969 - 62040 - | elongation factor Ts TERM 31 62732 - 62722 - G 72 -5.4 -4.71426 | opp_overlap 62722 TTTCGAGCAACAAAA TCTG TTT CAGA ATTTACTTCAATGAC rpsB 64013 - 63126 - | 30S ribosomal protein S2 TERM 32 64228 - 64243 + r 72 -6.2 -4.47328 | opp_overlap 64228 GATTGCGATGATTAA TTGCTA CATT TAGCAA TTTTGTCATCCAGTT cysS 65791 - 64418 - | cysteinyl-tRNA synthetase TERM 33 69356 - 69346 - g 70 -4 -4.90296 | AAAACTTTAGAAAAA TGTT TAG AACA GACTACTCCAGAGCA TERM 34 69946 - 69934 - g 75 -4.9 -5.17054 | ATAATACCTAAAAAA TATCA AGA TGATA TAAATGAGAATTGGC TERM 35 72560 - 72522 - g 78 -7 -4.68607 | overlap 72524 TATAAAAAATATAAA TGTGCTTTATGAGTATAA TTA TTATACTCATAAAAAATA TCACAGCCATCAAGG TERM 36 72558 - 72524 - g 76 -9.6 -2.60794 | overlap 72522 TAAAAAATATAAATG TGCTTTATGAGTATAA TTA TTATACTCATAAAAAA TATCACAGCCATCAA sca2 68152 - 72603 + | 190 kDa antigen precursor secG 73512 - 73210 - | preprotein translocase subunit SecG TERM 37 73655 - 73672 + r 76 -4.3 -5.27938 | opp_overlap 73649 73655, overlap 73649 TTTTAGATACAAAAA TTTATTA TTTG TAATAAA TTTTTATTTCAAACT TERM 38 73672 - 73655 - R 70 -4.3 -5.03994 | opp_overlap 73655 73649, overlap 73649 TTTTAGATACAAAAA TTTATTA TTTG TAATAAA TTTTTATTTCAAACT proP1 75000 - 73744 - | proline/betaine transporter ProP1 TERM 39 74923 - 74899 - G 73 -5.7 -4.58663 | ATCATTCGGGAAAAA TTTTGCTCCTA TTA TTGGTGCAAAA TAACTAAATAATACA RT0056 75871 - 74987 - | hypothetical protein TERM 40 75061 - 75081 + g 100 -9.7 -4.52857 | opp_overlap 75058, overlap 75062 TTGCAGGAATGATTA TCACTGCTC CAT GAGCAGTGC TTTTATCTGGAAACT TERM 41 75062 - 75080 + g 100 -13.2 -3.31232 | opp_overlap 75058, overlap 75061 TGCAGGAATGATTAT CACTGCTC CAT GAGCAGTG CTTTTATCTGGAAAC TERM 42 76255 - 76281 + G 73 -3.8 -5.22794 | overlap 76259 ATTGCAAAAAACGGT TATGGTGGTG ATGCATC CACTACTATA TTTTTTAATAATTAT TERM 43 76691 - 76675 - g 76 -3.7 -5.4833 | overlap 76676 GTAGGTAATAAAAAA GTCACTT CTA AAGTGAA ACTCAATCCTTTAAT TERM 44 76690 - 76676 - g 74 -7.2 -3.87914 | overlap 76675 TAGGTAATAAAAAAG TCACTT CTA AAGTGA AACTCAATCCTTTAA RT0057 76015 - 76737 + | OmpW-like outer membrane protein pntB 76866 - 78263 + | NAD(P)(+) transhydrogenase (B-specific) beta subunit RT0059 78320 - 78880 + | hypothetical protein queF 79882 - 79064 - | 7-cyano-7-deazaguanine reductase czcR 80599 - 79886 - | transcriptional activator protein CzcR TERM 45 80628 - 80663 + r 100 -9.4 -5.39721 | opp_overlap 80631 80634, overlap 80631 AAAATTCAAATTTGA TAATAATTTAGTTAAT AATT ATTAACTAAATTATAA TTTTTTATCTAGTGC TERM 46 80631 - 80660 + r 95 -11.1 -3.48081 | opp_overlap 80631 80634, overlap 80628 ATTCAAATTTGATAA TAATTTAGTTAAT AATT ATTAACTAAATTA TAATTTTTTATCTAG TERM 47 80660 - 80631 - R 93 -11.1 -3.39936 | opp_overlap 80631 80628, overlap 80634 ATTCAAATTTGATAA TAATTTAGTTAAT AATT ATTAACTAAATTA TAATTTTTTATCTAG TERM 48 80657 - 80634 - R 76 -8.4 -3.83262 | opp_overlap 80631 80628, overlap 80631 CAAATTTGATAATAA TTTAGTTAAT AATT ATTAACTAAA TTATAATTTTTTATC secB 81240 - 80782 - | preprotein translocase subunit SecB TERM 49 80923 - 80907 - G 79 -9.5 -3.51904 | overlap 80905 TAGCAAATGGAAATA TCATTGC TGG GCAATGA ACAGATAATAAAATT TERM 50 81214 - 81200 - G 81 -10 -3.47526 | opp_overlap 81199, overlap 81198 GCATTAACGGAAATA TGAGGC ATT GCCTCA CTAGTATCACTGTTT dcd 81995 - 81429 - | deoxycytidine triphosphate deaminase RT0064 82266 - 83588 + | hypothetical protein parC 86566 - 84353 - | DNA topoisomerase IV subunit A TERM 51 84658 - 84644 - G 73 -8.6 -3.1355 | opp_overlap 84637 GCCATTTACAGGTAA GCATGT TAT ACATGC ATACCCCTCTGGTAT TERM 52 85521 - 85511 - G 70 -4 -4.90266 | opp_overlap 85511 85512 85514, overlap 85512 TCTATGAACTAAAAA TTCT TGT AGAA TCTCTACAATATTCA TERM 53 85514 - 85530 + g 72 -8.1 -3.28487 | opp_overlap 85511 85512, overlap 85511 85512 ATGAACTAAAAATTC TTGTAGA ATC TCTACAA TATTCATTACTCTCG RT0066 87348 - 86701 - | hypothetical protein TERM 54 86830 - 86845 + g 70 -6.2 -4.14615 | ATACTTAACTTTTTT TGTTGT GATA ACAACA TTTTGAAGAATTTTT argS 89149 - 87419 - | arginyl-tRNA synthetase dgtP 90312 - 89158 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein iscA1 90567 - 90899 + | iron-binding protein IscA/HesB kdsA 93125 - 92301 - | 2-dehydro-3-deoxyphosphooctonate aldolase RT0071 93472 - 93161 - | hypothetical protein RT0072 95142 - 93475 - | putative ABC transporter ATP-binding protein TERM 55 95175 - 95198 + r 82 -8.4 -4.55093 | ATTATTTTACACCGC TATATTTACT ATTA AGTAAATATA TTTATTATTCTATAG TERM 56 95206 - 95221 + r 72 -4.8 -5.0133 | TAAATATATTTATTA TTCTAT AGAC ATAGAA TTTTTTAAAAACATA parB 96179 - 95319 - | chromosome partitioning protein ParB (Spo0J protein) parA 96933 - 96166 - | chromosome partitioning protein ParA (Soj protein) gidB 97505 - 96930 - | glucose-inhibited division protein B gidA 99354 - 97489 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 57 97922 - 97935 + g 76 -2.5 -5.51612 | opp_overlap 97922 GTAGTTAAAGACAAT TTATT TAAC AATAA TTTTGTTTTTTCTAT TERM 58 99312 - 99284 - G 81 -10.3 -3.06492 | opp_overlap 99287 99288 99293, overlap 99293 GTATGTACTCCAAGA CGCGCAGAAGCAG CTG CTGCTTCTACACC TGCATGTCCACCACC ndk 99780 - 99358 - | nucleoside diphosphate kinase glpT 101208 - 99919 - | glycerol-3-phosphate transporter TERM 59 100473 - 100453 - G 73 -5.5 -4.64952 | overlap 100449 100455 AATGATATAAACAAA CATGTTTGC TAA ACAAACATA CCATATTAGCTTATT tlcA 102774 - 101278 - | ADP/ATP carrier protein 1 TERM 60 102111 - 102086 - G 77 -4.9 -5.2112 | overlap 102087 AATATTATTAAAAAA CTACTTGTTAT CATT ATAACAAATAA AGGTATAAATTTTAA TERM 61 104961 - 104949 - g 76 -6.3 -4.59511 | AAGATGTTGCAAAAA CTAAC GAT GTTAG TACACAAAAAATTAT RT0080 104846 - 105241 + | hypothetical protein pgsA 106350 - 105814 - | 3-phosphatidyl-1prime-glycerol-3prime-phosphate synthase. yidC 108026 - 106350 - | putative inner membrane protein translocase component YidC TERM 62 107090 - 107107 + g 71 -7.1 -3.72152 | CGAGTAAGTCTACTT TTTTTGC TCCG GCAAAAA TTCTACTTTTAATTG TERM 63 107918 - 107928 + g 80 -2.4 -5.80364 | TATATATCGCCATTC GCTG TTG CTGC TTTTTTTGTTCAGGT TERM 64 108152 - 108195 + r 82 -9.4 -3.45023 | gap 1, opp_overlap 108160, overlap 108155 108160 TTTTATACTATGTTC TATGAAAATTTCTCAAAAA AATTTAA TTTTTGAGAAATTTTC-TA TTATACTACTCCTAC TERM 65 108155 - 108193 + r 100 -13.6 -3.29541 | opp_overlap 108160, overlap 108152 108160 TATACTATGTTCTAT GAAAATTTCTCAAAAA AATTTAA TTTTTGAGAAATTTTC TATTATACTACTCCT TERM 66 108160 - 108188 + r 86 -7.7 -4.75289 | opp_overlap 108160, overlap 108155 108152 TATGTTCTATGAAAA TTTCTCAAAAA AATTTAA TTTTTGAGAAA TTTTCTATTATACTA TERM 67 108188 - 108160 - R 78 -7.7 -4.2558 | opp_overlap 108160 108155 108152 TATGTTCTATGAAAA TTTCTCAAAAA AATTTAA TTTTTGAGAAA TTTTCTATTATACTA RT0083 109362 - 108196 - | hypothetical protein TERM 68 109400 - 109418 + H 70 -3.2 -5.35224 | AAAATACAAATCATT TTCTTATT ATT ACTAAGAA TTTTATTTTTATCAA TERM 69 109557 - 109537 - H 85 -11.3 -2.79291 | opp_overlap 109531, overlap 109534 109542 AAACTGTATTAATTA GTCAATTAC TTT GTAATTGAC AGCAACTTAGACGTA TERM 70 109615 - 109625 + G 72 -2.6 -5.38047 | GATATTGCCTAATAT TAAT CCA ATTA TTTTTTCTATAGGTC lgt 109598 - 110377 + | prolipoprotein diacylglyceryl transferase RT0085 110356 - 111432 + | hypothetical protein sdhB 112671 - 111886 - | succinate dehydrogenase iron-sulfur subunit ftsH 114823 - 112910 - | cell division protein FtsH mesJ 116166 - 114874 - | cell cycle ATPase MesJ TERM 71 115221 - 115231 + g 70 -5.4 -4.53303 | opp_overlap 115221 CGAATTCTCTATATA TGAG TAA CTCA TTTTGTATACGCGTA TERM 72 115619 - 115631 + g 71 -4.9 -4.72497 | AAATTTGACTCATCT TCAAA CCA TTTGA TTTTATTGGTGACTA TERM 73 116362 - 116373 + r 78 -4.4 -5.46657 | overlap 116348 ATTCAGCTAAATCTG CTGA ATTT TCAG TTTTTTGTTCACGTA rplI 116854 - 116339 - | 50S ribosomal protein L9 rpsR 117153 - 116866 - | 30S ribosomal protein S18 rpsF 117543 - 117178 - | 30S ribosomal protein S6 aco1 118420 - 119607 + | Acyl-CoA desaturase. gcp 119725 - 120888 + | O-sialoglycoprotein endopeptidase clpB 124112 - 121536 - | ATP-binding ClpB chaperone TERM 74 123649 - 123665 + g 84 -6.6 -5.22039 | TCATAACTATTTTCT GCAGAT TCAGT ATCTGC TTTTTTGCCTTTACG phbB 125155 - 125880 + | acetoacetyl-CoA reductase TERM 75 126258 - 126231 - f 83 -9.4 -3.50111 | overlap 126229 126233 126244 TATTAAAAATGAAGA TATTGTATCTAA AGTA TTAGATACAACA AAGTTTCGTATAAAT TERM 76 126256 - 126233 - f 87 -9.8 -3.30457 | overlap 126229 126231 126244 TTAAAAATGAAGATA TTGTATCTAA AGTA TTAGATACAA CAAAGTTTCGTATAA RT0096 126476 - 127798 + | hypothetical protein TERM 77 127980 - 127950 - T 82 -9.3 -3.36694 | opp_overlap 127949, overlap 127959 ATCTAGTTTTAAACA CTAAAAACACTAA AATTA TTAGTATTTTTAG ATCACTTGACAGAGG RT0097 128672 - 128082 - | hypothetical protein RT0098 128733 - 129302 + | hypothetical protein RT0099 131548 - 132207 + | hypothetical protein TERM 78 135250 - 135237 - g 83 -6.7 -5.06816 | ACTGGTGAACAAAAA GCGAT ATTA ATCGC AATAATCCTTGCTGA recF 134379 - 135461 + | recombination protein F TERM 79 136455 - 136435 - g 100 -9.1 -5.49809 | opp_overlap 136449, overlap 136436 GAAAGCTCAAAAAAA CCACCTAAA TTA TTTAGGTGA TACATCTATTGCTGC TERM 80 136454 - 136436 - g 93 -10.4 -3.88259 | opp_overlap 136449, overlap 136435 AAAGCTCAAAAAAAC CACCTAAA TTA TTTAGGTG ATACATCTATTGCTG RT0101 135704 - 137308 + | hypothetical protein RT0102 138097 - 137564 - | hypothetical protein RT0103 138255 - 139067 + | hypothetical protein RT0104 139126 - 139374 + | hypothetical protein TERM 81 139792 - 139805 + G 82 -5.3 -5.40072 | CATAAAACATGGTAT GAGTT TTTT AACTC TTTTTTTACCACAAG atpB 139379 - 140107 + | F0F1 ATP synthase subunit A atpE 140141 - 140365 + | F0F1 ATP synthase subunit C atpX 140378 - 140848 + | F0F1 ATP synthase subunit B' atpF 140853 - 141356 + | F0F1 ATP synthase subunit B TERM 82 143111 - 143127 + T 83 -6.7 -5.19251 | opp_overlap 143108 143111 TAAATTAAAGAACAA TATTCAA TCT TTGAATA TTTTTGTTGATCTTA TERM 83 143127 - 143111 - T 71 -6.7 -4.18294 | opp_overlap 143111, overlap 143108 TAAATTAAAGAACAA TATTCAA TCT TTGAATA TTTTTGTTGATCTTA RT0109 144279 - 143215 - | hypothetical protein mrp 145235 - 144279 - | ATP-binding protein Mrp TERM 84 144950 - 144965 + g 71 -4.8 -4.77757 | overlap 144959 AGATAATTTTTTTTA CATTTT CTAC AAAATG TTTTGGTTTTTGAGC hflK 145336 - 146370 + | protease activity modulator protein HflK hflC 146522 - 147382 + | protease activity modulator protein HflC RT0113 147398 - 148954 + | serine protease RT0114 149053 - 149796 + | hypothetical protein sdhC 149938 - 150312 + | succinate dehydrogenase cytochrome b-556 subunit sdhD 150470 - 150847 + | succinate dehydrogenase hydrophobic membrane anchor protein sdhA 150987 - 152777 + | succinate dehydrogenase flavoprotein subunit glnP 152913 - 153569 + | glutamine transport system permease protein GlnP TERM 85 153693 - 153664 - f 83 -3.6 -5.88471 | opp_overlap 153669, overlap 153665 153669 GATGATTAAAAAAAA GTCAAGGGTGAA GTATGT TTCACCCTTTAA ATTAGCGATAAGTAA TERM 86 153692 - 153665 - f 73 -7.1 -4.11456 | opp_overlap 153669, overlap 153664 153669 ATGATTAAAAAAAAG TCAAGGGTGAA GTATGT TTCACCCTTTA AATTAGCGATAAGTA TERM 87 153688 - 153669 - f 72 -7.9 -3.63167 | opp_overlap 153669, overlap 153665 153664 TTAAAAAAAAGTCAA GGGTGAA GTATGT TTCACCC TTTAAATTAGCGATA TERM 88 153669 - 153688 + F 76 -8.6 -3.75629 | opp_overlap 153665 153664 153669 TTAAAAAAAAGTCAA GGGTGAAG TATG TTTCACCC TTTAAATTAGCGATA TERM 89 154000 - 153979 - g 73 -8.7 -3.1829 | opp_overlap 153982, overlap 153977 153982 AGAGTATTAGTAAGA GGAGGTCAG GTTC CTGACCTTC CTGGTGTGAAGTATC TERM 90 153982 - 153997 + G 74 -9 -3.24925 | opp_overlap 153982 153979 153977 GTATTAGTAAGAGGA GGTCAG GTTC CTGACC TTCCTGGTGTGAAGT TERM 91 153997 - 153982 - g 71 -9 -2.78495 | opp_overlap 153982, overlap 153979 153977 GTATTAGTAAGAGGA GGTCAG GTTC CTGACC TTCCTGGTGTGAAGT rpsL 153730 - 154119 + | 30S ribosomal protein S12 TERM 92 154127 - 154117 - f 70 -2.6 -5.60993 | GCTGCTACAAAAAAA TAAA TTA TTTA GTTAGAGATAGAGAG rpsG 154152 - 154634 + | 30S ribosomal protein S7 TERM 93 155459 - 155441 - g 76 -6.1 -4.57073 | opp_overlap 155441 155440 TAGTGCTTTTAAAAA TAAAGGT GTGCA ACCTTTA CTTGATGCCATAGTC fusA 154647 - 156746 + | elongation factor G TERM 94 156839 - 156883 + F 100 -14.9 -2.79501 | opp_overlap 156840 156853, overlap 156849 156853 AAGTGTAATTTATAA ATTTTAATAATAAATCAATAA ATT TTATTGATTTATTATTAAAAA TATGATAGGAGTGTA TERM 95 156882 - 156840 - f 100 -18.4 -3.97636 | opp_overlap 156839 156849 156853, overlap 156853 AGTGTAATTTATAAA TTTTAATAATAAATCAATAA ATT TTATTGATTTATTATTAAAA ATATGATAGGAGTGT TERM 96 156849 - 156873 + F 91 -10.3 -3.64487 | opp_overlap 156840 156853, overlap 156839 156853 TATAAATTTTAATAA TAAATCAATAA ATT TTATTGATTTA TTATTAAAAATATGA TERM 97 156853 - 156869 + F 75 -6.7 -4.45068 | opp_overlap 156853 156840, overlap 156849 156839 AATTTTAATAATAAA TCAATAA ATT TTATTGA TTTATTATTAAAAAT TERM 98 156869 - 156853 - f 75 -6.7 -4.4634 | opp_overlap 156849 156839 156853, overlap 156840 AATTTTAATAATAAA TCAATAA ATT TTATTGA TTTATTATTAAAAAT secE 157133 - 157333 + | preprotein translocase subunit SecE nusG 157349 - 157927 + | transcription antitermination protein NusG rplK 158105 - 158542 + | 50S ribosomal protein L11 rplA 158545 - 159258 + | 50S ribosomal protein L1 rplJ 159348 - 159857 + | 50S ribosomal protein L10 rplL 160038 - 160415 + | 50S ribosomal protein L7/L12 TERM 99 160628 - 160659 + F 77 -3.1 -5.63517 | AATAAAATCTAAAAA GCCTTATTTTAGT GATTAA ATTTGAATAAGGC TTTTTTGTTTAAAAA TERM 100 161563 - 161581 + G 74 -9 -3.24289 | overlap 161572 AAGTTATGCAGCTCC TCTTAAAG TTA CTTTAAGA TTAAGTATTTGGGAT TERM 101 162524 - 162504 - g 72 -4.1 -5.1356 | opp_overlap 162508, overlap 162508 TTGGACGAATAAAAA TGAATTCTA GAT TAGAATTGA ATATTTCTGAAGAAA TERM 102 165271 - 165292 + G 74 -7.3 -3.98159 | TGGTGAAAATAATTT TGAATCAGG CATT CCTGAATCA TTTAATGTTATGATA rpoB 161240 - 165364 + | DNA-directed RNA polymerase subunit beta TERM 103 168514 - 168501 - g 72 -8.1 -3.28712 | GTTTCTTCTGTAGAA GCGTC ATAT GACGC AAAAGTGAAAATTAT rpoC 165666 - 169784 + | DNA-directed RNA polymerase subunit beta' TERM 104 169958 - 169931 - f 100 -10.1 -4.70659 | opp_overlap 169931, overlap 169916 TTTTATAGCTAAAAA GCCTATAAAAA CTTAGT TTTTTATAGGC TTTTTTCTTATTTTG TERM 105 169931 - 169958 + F 100 -10.1 -5.77677 | opp_overlap 169916 169931 TTTTATAGCTAAAAA GCCTATAAAAA CTTAGT TTTTTATAGGC TTTTTTCTTATTTTG pepA 170817 - 172319 + | leucyl aminopeptidase RT0132 172414 - 173208 + | hypothetical protein RT0133 173310 - 173744 + | hypothetical protein aspS 173816 - 175633 + | aspartyl-tRNA synthetase RT0135 178010 - 175887 - | hypothetical protein TERM 106 176454 - 176464 + g 72 -4 -5.05606 | TTCTACTTTATCTCT TTGA ACC TCAA TTTCTTTTTCTTGCC TERM 107 176685 - 176705 + g 74 -2 -5.60864 | gap 1, opp_overlap 176685, overlap 176690 ACCACCGTTTTTAAA TTCAGGTAA AACA TTAC-TGAA TTTTTTTACTATCTC TERM 108 178095 - 178067 - R 93 -9 -4.79223 | opp_overlap 178071 178091, overlap 178071 TGATATGACCAAAAA CAAAGTCATGTA ATAAA TTCATGACTTTG CAGAAAGTTACTAAC RT0136 178820 - 178110 - | hypothetical protein TERM 109 178769 - 178779 + g 72 -4 -5.06451 | TTCTTAAGCCTTCAT CAAA AGT TTTG TTTTTTGAGGTAGTA dapB 179740 - 179021 - | dihydrodipicolinate reductase TERM 110 179208 - 179221 + g 81 -3.9 -5.56112 | opp_overlap 179208 CCACCACGAAGTGAA GAAAT ACCT ATTTC TTTTTTACTTTTTAT TERM 111 179887 - 179901 + r 70 -7.2 -3.65996 | opp_overlap 179887 179886, overlap 179886 CTTCGTGTATAAAAT TACCTT CTC AAGGTA TATTTGTATGTCAAA RT0138 180488 - 180003 - | hypothetical protein glnH 181198 - 180473 - | glutamine-binding periplasmic protein GlnH gatB 182814 - 181363 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 184450 - 182969 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 184755 - 184453 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 112 184713 - 184727 + g 72 -2.8 -5.4111 | TTTCAAATTTTAATC TAGCTA ATT TTGCTA TTTTTTGTGCTTCTT TERM 113 184883 - 184898 + r 74 -4.8 -5.24129 | opp_overlap 184882 184883 184885 184896 GTCATACAAACTAAT TAGTTT TCTA AAACTA TTTTTTATCAAAACA frr 185819 - 185259 - | ribosome recycling factor pyrH 186740 - 186006 - | uridylate kinase RT0145 187055 - 186744 - | putative monovalent cation/H+ antiporter subunit E emrB 188598 - 187039 - | multidrug resistance protein B TERM 114 187392 - 187403 + g 82 -4.4 -5.63517 | overlap 187390 GATTATAAAGTCCGC TAGC GTTA GCTA TTTTTTCTTTGGGCA RT0147 188780 - 188983 + | hypothetical protein RT0148 189461 - 189321 - | hypothetical protein omp1 192397 - 190091 - | outer membrane protein Omp1 RT0151 193700 - 192627 - | membrane associated zinc metalloprotease TERM 115 193285 - 193307 + g 81 -10.6 -3.21395 | opp_overlap 193306, overlap 193284 CCAGCTCTTTCTGCT GGTGATGAAG CAA CTACATCACC TATTATAGGAGGAAT nusB 193868 - 194389 + | transcription antitermination protein NusB ftsJ 194386 - 195069 + | rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA methyltransferase) RT0154 195647 - 195811 + | hypothetical protein RT0155 196154 - 196020 - | hypothetical protein RT0156 196379 - 196185 - | hypothetical protein RT0157 197479 - 196373 - | hypothetical protein RT0158 198021 - 197581 - | hypothetical protein RT0159 198319 - 199041 + | hypothetical protein RT0160 199382 - 199110 - | hypothetical protein acrD 202451 - 199425 - | acriflavin resistance protein D TERM 116 200873 - 200912 + g 73 -8.2 -3.39908 | opp_overlap 200872, overlap 200875 200877 TAATGATGACAAATT TCTTTTTATTATCTAAAG CTAA CTTTAGATAATAAATATA TCTATTTTGAACAAA TERM 117 200875 - 200910 + g 87 -10.8 -3.26779 | opp_overlap 200872, overlap 200873 200877 ATGATGACAAATTTC TTTTTATTATCTAAAG CTAA CTTTAGATAATAAATA TATCTATTTTGAACA TERM 118 200877 - 200908 + g 100 -13.4 -3.19304 | opp_overlap 200872, overlap 200875 200873 GATGACAAATTTCTT TTTATTATCTAAAG CTAA CTTTAGATAATAAA TATATCTATTTTGAA hupA 202937 - 203236 + | DNA-binding protein HU holB 203347 - 204141 + | DNA polymerase III subunit delta' ffh 204694 - 206043 + | signal recognition particle protein ppcE 208382 - 206220 - | post-proline cleaving enzyme TERM 119 208153 - 208168 + g 75 -4.8 -5.10526 | overlap 208140 208156 GTTTTTCTTTGGTCA TAGAAA ATAG TTTCTA TTTCTTTTTTGATCT TERM 120 208201 - 208211 + g 79 -5.4 -5.30339 | TTATATTCCTGCATT GCTT GCA AAGC TTTTTCTGTTTTACT hemN 208609 - 209784 + | coproporphyrinogen III oxidase gltP 211836 - 210637 - | proton/sodium glutamate symporter TERM 121 211500 - 211484 - G 74 -2.3 -5.65177 | opp_overlap 211467 ATATTTACAAAAAAA TCAATTA TAT TAAATGA AGTTCTACCTGTAGT TERM 122 211626 - 211616 - G 82 -6.8 -5.00616 | opp_overlap 211616 GTCGTGCCTAAAAAA GCAG CTA CTGC TTTCATTCCTACTCT TERM 123 211616 - 211626 + g 71 -6.8 -3.97444 | opp_overlap 211616 GTCGTGCCTAAAAAA GCAG CTA CTGC TTTCATTCCTACTCT cutA 212323 - 211874 - | periplasmic divalent cation tolerance protein CutA RT0169 212761 - 212345 - | 6-pyruvoyl tetrahydrobiopterin synthase. sucB 214125 - 212929 - | dihydrolipoamide acetyltransferase kgd 216966 - 214165 - | alpha-ketoglutarate decarboxylase TERM 124 214733 - 214747 + g 73 -5.8 -4.65916 | GCAGGAGTAGTTGGA TATGTA ATA TACATA TTTTCTTCAGCTGCG TERM 125 215447 - 215457 + g 72 -2.6 -5.49568 | TATTCCTTATCTAGC TTTA TTT TAAA TTTTTCTTTTAACTT RT0172 218498 - 217326 - | carboxypeptidase Taq TERM 126 218191 - 218207 + g 89 -3.7 -6.09133 | overlap 218192 GTATGTTCAGTTGTA GTAGTAG CAG CTACTAA TTTTTTTTTAAGCTG TERM 127 218192 - 218206 + g 77 -7.2 -4.23853 | overlap 218191 TATGTTCAGTTGTAG TAGTAG CAG CTACTA ATTTTTTTTTAAGCT recN 220276 - 218612 - | DNA repair protein RecN TERM 128 219003 - 219025 + g 71 -7.1 -3.745 | overlap 219001 GATAATTCACCACCA GAAGCGATT TTATT AATTGCTTC TATTTTCATGCCTGG RT0174 221039 - 220284 - | lipoprotein dnaJ 222590 - 221478 - | chaperone protein DnaJ TERM 129 222503 - 222524 + g 81 -5.9 -5.21709 | overlap 222484 TATCAGGATGATATT GCTTAGCTA GCTT TAGATAAGC TTTTTTAATGTCAGC TERM 130 222536 - 222550 + g 70 -5.7 -4.28994 | AAGCTTTTTTAATGT CAGCT TGGCT AGCTG TTTTACTGACTCCTA dnaK 224595 - 222712 - | molecular chaperone DnaK TERM 131 225028 - 225012 - g 79 -5.1 -5.30575 | overlap 225013 GAAAAAGCTAAAAAA GCAATCG TAA CGATTGA TACTAGAATTGCAGT TERM 132 225027 - 225013 - g 80 -8.6 -3.75905 | overlap 225012 AAAAAGCTAAAAAAG CAATCG TAA CGATTG ATACTAGAATTGCAG RT0177 224874 - 226367 + | serine protease TERM 133 227061 - 227072 + F 76 -4.4 -5.36314 | TGATAGCTTTTCATA TAGC TCAA GCTA TTTTTTAATATTTTA TERM 134 227308 - 227322 + F 73 -2.8 -5.73978 | opp_overlap 227309, overlap 227309 AAAACATCAACATTA AGCATA ATA TATGCA TTTTTTATTTATAAT RT0178 227318 - 227791 + | hypothetical protein holA 227799 - 228764 + | DNA polymerase III subunit delta coq7 228891 - 229427 + | ubiquinone biosynthesis protein CoQ7 TERM 135 229471 - 229453 - f 72 -7.6 -3.58343 | opp_overlap 229461, overlap 229461 TTGATTAGTTTGAAA TCTAAAAA TCT TTTTTAGA GACTAAAAAGATCAT RT0181 230866 - 231252 + | hypothetical protein RT0182 232138 - 231515 - | hypothetical protein dapD 232221 - 233045 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase RT0184 233126 - 233230 + | hypothetical protein TERM 136 233363 - 233384 + T 75 -5.3 -5.07567 | TCTTTTTTGCTTTAT CTTATAGAA CATA TTTTATAAG TTTTTTAGCATGTGA pbpC 237119 - 234789 - | membrane carboxypeptidase/penicillin-binding protein PbpC TERM 137 237173 - 237120 - R 84 -9.2 -3.69482 | gap 1, opp_overlap 237124 237129, overlap 237121 237124 GGATTTAAGACACAA TTTATGTATTGTTGTTATACCGTGG TTAAG CAACGGTATAACAACA-TACATTAT AAAGAATTTTAAAAA TERM 138 237172 - 237121 - R 91 -12.7 -2.81207 | gap 1, opp_overlap 237124 237129, overlap 237120 237124 GATTTAAGACACAAT TTATGTATTGTTGTTATACCGTGG TTAAG CAACGGTATAACAACA-TACATTA TAAAGAATTTTAAAA TERM 139 237124 - 237169 + r 100 -15.1 -3.33009 | gap 1, opp_overlap 237121 237120 237124, overlap 237129 TTAAGACACAATTTA TGTATTGTTGTTATACCGTGGT TAA GCAACGGTATAACAACA-TACA TTATAAAGAATTTTA TERM 140 237169 - 237124 - R 100 -14.4 -2.66335 | gap 1, opp_overlap 237124 237129, overlap 237121 237120 TTAAGACACAATTTA TGTATTGTTGTTATACCGTGG TTAAG CAACGGTATAACAACA-TACA TTATAAAGAATTTTA TERM 141 237129 - 237165 + r 100 -16.1 -2.5955 | opp_overlap 237124 237121 237120, overlap 237124 ACACAATTTATGTAT TGTTGTTATACCGTGGT TAA GCAACGGTATAACAACA TACATTATAAAGAAT TERM 142 237600 - 237588 - R 70 -6.3 -4.2586 | TGATAGTAAGACAAA TGTTG ATT CAACA CAAATTTTAACAAAT RT0186 239010 - 238564 - | hypothetical protein RT0187 239956 - 239015 - | hypothetical protein TERM 143 239258 - 239279 + g 77 -4.5 -5.28831 | opp_overlap 239262, overlap 239262 TAAGCTCTTATTAAG TATAGCTTT ATTA AAAGCTCTA TTTTGTTTTATTAAT RT0188 241028 - 239961 - | hypothetical protein TERM 144 240204 - 240194 - G 75 -4 -5.24129 | opp_overlap 240179 240176 240197 TTTTTTTAGAAAAAA GAAT ATT ATTC GGTAATAGTTTATCA TERM 145 240795 - 240822 + g 70 -8.6 -2.59079 | opp_overlap 240791, overlap 240792 TATGACAATATTTTT ACATGTAAATTC TTGA GAATTTACATGA TCAATTAACTTTACT fdxB 241378 - 241025 - | ferredoxin, 2Fe-2S (andrenodoxin-like) hscA 243203 - 241443 - | chaperone protein HscA hscB 243694 - 243194 - | co-chaperone HscB rnhB 243899 - 244480 + | ribonuclease HII uvrB 246533 - 244545 - | excinuclease ABC subunit B grxC1 246610 - 246924 + | glutaredoxin 3 RT0195 247019 - 248797 + | ABC transporter ATP-binding protein TERM 146 249302 - 249290 - f 73 -3.5 -5.56112 | ATAAAAAGTAAAAAA TTATA AAA TATAA GATTATTGGGTGGGT TERM 147 249412 - 249429 + F 77 -7.1 -4.42206 | ATTTTAGGATATTGA TTTAGTG TATA CACTAAA TTTATTAGTTTAATT TERM 148 250109 - 250130 + G 73 -8.1 -3.4878 | opp_overlap 250109 250104 250102, overlap 250114 CCGGTAAATATCGAA GATGAGATG AAAG CATCTTATC TTGATTATGCTATGA gyrA 250064 - 252781 + | DNA gyrase subunit A TERM 149 253108 - 253126 + F 70 -4.6 -5.02231 | opp_overlap 253112 ACTAATTTTTTTCAT GAAATTGA AAT TCAATTAC TTTTTAATCTTTTTA def 254055 - 254582 + | peptide deformylase fmt 254579 - 255490 + | methionyl-tRNA formyltransferase TERM 150 255632 - 255664 + F 89 -9.5 -4.21194 | opp_overlap 255632 GAAGTTTAAACTAAG TTTTTTTACAGAAAT CCA ATTTTTGTAAGAAAA TTTTACATGCTAAAG RT0199 255711 - 255851 + | hypothetical protein RT0201 258853 - 258437 - | hypothetical protein TERM 151 259121 - 259142 + r 70 -3.1 -5.27938 | opp_overlap 259126 259138 GTCACGATTTGACCG TAAGATCAA TAAA TTGATATTA TTTTTGTTTAAGAAT TERM 152 259207 - 259187 - R 87 -9.9 -3.40899 | opp_overlap 259187 AATCGCGTATTATAA TACAAACTT ATA AAGTTTGTA TTGCTGGCTTGGTGG TERM 153 259187 - 259207 + r 85 -9.9 -3.22884 | opp_overlap 259187 AATCGCGTATTATAA TACAAACTT ATA AAGTTTGTA TTGCTGGCTTGGTGG RT0203 260576 - 259503 - | ATPase queA 262337 - 261210 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 154 262093 - 262103 + g 81 -2.6 -5.67283 | opp_overlap 262093 AAAGCACCCCAACAA TTAT CCG ATAA TTTTTTATTTAAGTT TERM 155 262828 - 262803 - R 77 -7.7 -4.15235 | overlap 262801 AACGGTGAAAAAATA GTAAGGTAATG TTAT CATTAACTTAC ACTATCAATCCTTTT RT0205 264594 - 262825 - | ABC transporter ATP-binding protein RT0206 264771 - 265040 + | hypothetical protein TERM 156 265117 - 265097 - f 76 -4.2 -5.30155 | opp_overlap 265097 TCAGGAAGCAAAAAA TATAAAAA TTTGC TTTTTATA TATTTTTGTTAGGCA cydA 265205 - 266548 + | cytochrome d ubiquinol oxidase subunit I cydB 266680 - 267699 + | cytochrome d ubiquinol oxidase subunit II TERM 157 268392 - 268376 - g 81 -3.7 -5.60689 | TTATATAATAAAAAA TTTGCCA GTT TTGCAAA TACGATCAATAGTAC TERM 158 268756 - 268742 - g 72 -8.6 -2.91144 | opp_overlap 268749 268753, overlap 268739 TTATCGCTTAAATCA CGCAAT GTT ATTGCG AGCGATAATTATATT RT0209 267959 - 268837 + | glucosyltransferase TERM 159 268933 - 268951 + F 75 -7.6 -3.91716 | ACTGATCTACGCCTT TCATTTTT CTG AAAAATGA TTATTTAGAAAATAA TERM 160 269963 - 269949 - g 72 -2.8 -5.39905 | ACGAAATAATAAAAA TAACTG AAA CAGTAA GTACAGAAGAGCTTA mpp 268976 - 270214 + | protease purC 270336 - 271046 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 161 271227 - 271213 - f 77 -7.2 -4.41047 | opp_overlap 271212 271213 271215 AGTTTTTAATCAAAA TACGAT TTT ATCGTA ATCTTTATATCTTTG thrS 272365 - 274272 + | threonyl-tRNA synthetase RT0213 275173 - 275036 - | hypothetical protein TERM 162 276220 - 276206 - R 87 -7.2 -5.26316 | opp_overlap 276206 276205 276208 276215 TCACTGCATAAAAAA TATGGA GTA TCCATA GTATCTTTGGAATTA RT0214 276882 - 276535 - | hypothetical protein RT0215 278131 - 276935 - | hypothetical protein TERM 163 277415 - 277439 + g 76 -3.7 -5.37171 | overlap 277416 277417 AGCTTTTACAATATT TTCTAATGATA CTC TATTATTAGGG TTTTTATTTGCTATT TERM 164 277794 - 277775 - G 71 -8 -3.53761 | opp_overlap 277768 277766 TAATTCTTTTTGAAA TTTTAGCA CTTG TGCTAAAA CGTTCAAACATTTTT TERM 165 278067 - 278045 - G 83 -10 -3.58329 | opp_overlap 278045 TAAAGATTTTGTAAA GACTCCTAAT TTT ATTAAGAGTC TTTTTAGTGTTGCCT TERM 166 278045 - 278067 + g 88 -7.8 -4.88228 | opp_overlap 278045 TAAAGATTTTGTAAA GACTCCTAAT TTT ATTAAGAGTC TTTTTAGTGTTGCCT TERM 167 278936 - 278905 - g 78 -9.6 -3.10959 | gap 1, overlap 278901 278907 CAACGGCAATAGATA TAGCTGCTGCAAG GGCAGGG CTTGCAGCAGC-A GAAACAAATAAACTA TERM 168 278935 - 278907 - g 100 -14.7 -3.10761 | overlap 278905 278901 ACGGCAATAGATATA GCTGCTGCAAG GGCAGGG CTTGCAGCAGC AGAAACAAATAAACT tolC 278361 - 279725 + | outer membrane protein TolC precursor RT0217 279727 - 280140 + | hypothetical protein TERM 169 280219 - 280229 + F 70 -4 -5.24416 | opp_overlap 280219 GATTGTTTTATGAAA TTAC TTT GTAA TTTTTCTTGTAATTA TERM 170 281341 - 281308 - g 78 -3.3 -5.626 | gap 1, opp_overlap 281308 281313 281314, overlap 281314 GAGGCTACAAAAAAA CAAG-ATTGGTATACT CCG ATTATACCAGTTCTTG TAGTTGATCCCAATA TERM 171 281414 - 281393 - g 90 -4.6 -5.71712 | opp_overlap 281393 CTTTAGAGAAAAAAA TTGATAAT GATCAA ATTATCAA TAATCAAGCGAAATC RT0218 280273 - 282033 + | hypothetical protein TERM 172 283358 - 283346 - g 80 -6.3 -4.92791 | opp_overlap 283345 283352 283353 GAGAATATAATAAAA GATCA TTT TGATC ACTTCCTTAGTAGTG TERM 173 283459 - 283444 - g 74 -3.3 -5.44198 | AAGAAACAAGAAAAA CGAAA GAAATA TTTCG CGTAAAAATGCCACT parE 282215 - 284206 + | DNA topoisomerase IV subunit B ctp 284315 - 285643 + | tail specific periplasmic protease precursor TERM 174 286364 - 286346 - g 79 -10.4 -2.96979 | overlap 286338 ATTACAAGTCATATA TTACTACC AAA GGTAGTAA TAGAAAATGAAAGTG RT0221 285869 - 287365 + | histidine kinase sensor protein TERM 175 288264 - 288250 - g 85 -5.7 -5.47218 | overlap 288261 CTGTATCTAAAAAAA TGGCA GAAGA TGCCA AGATCAAATTTGGCT RT0222 287565 - 288293 + | hypothetical protein TERM 176 288532 - 288516 - g 72 -5.2 -4.84311 | opp_overlap 288516, overlap 288511 TTGGACACAACAAAA GCTAAT AACGA ATTAGC TTTTAATACTTTAGA TERM 177 288657 - 288630 - g 93 -5.7 -6.00086 | opp_overlap 288636 ATATCAGAAAAAAAA TATTTAGAAGC AAAAGA GCTTCTTAATA AAATTATTGAAAATA TERM 178 288757 - 288743 - g 77 -7.2 -4.30576 | opp_overlap 288737 TCTTGATGATCAAAA TCTTGA TAT TCAAGA TAAGGAAAAATTGCA RT0223 288306 - 288968 + | hypothetical protein RT0224 288968 - 290254 + | hypothetical protein TERM 179 290259 - 290244 - f 75 -7.6 -3.97149 | opp_overlap 290244 290243 GCAGTAAAATAAATA TGCATC GGTA GATGCA GTTTAATTTAAAAAA rplM 290453 - 290920 + | 50S ribosomal protein L13 rpsI 290927 - 291412 + | 30S ribosomal protein S9 TERM 180 292269 - 292285 + T 74 -8.1 -3.41587 | opp_overlap 292261 292266 ATATACACATAATGT TATGCTA AAT TAGCATA TTAAATTTTATCAAA nudH 293374 - 292889 - | dinucleoside polyphosphate hydrolase pleD 294756 - 293404 - | response regulator PleD TERM 181 293475 - 293487 + g 74 -6.3 -4.44307 | opp_overlap 293475, overlap 293473 CAGCACGTTTAATGA TCGAT TCT ATCGA TTCTTCTTTTTTATA TERM 182 293514 - 293525 + g 83 -3 -5.77853 | TATATTCCGTTACTC CTAT TGAA ATAG TTTTTTTTAACGGTT TERM 183 293680 - 293692 + g 76 -6.3 -4.60041 | TGCTATTAAGTCTGT TACTC TGA GAGTA TTTTTCAAAATACGT efp 294831 - 295397 + | elongation factor P TERM 184 295512 - 295502 - g 70 -4 -4.9792 | overlap 295489 GATGCTACAGAAAAA TTCT GTA AGAA ATGAAGAATTTTGTC suhB 295407 - 296144 + | extragenic suppressor protein RT0232 296355 - 296678 + | hypothetical protein psd 296712 - 297407 + | phosphatidylserine decarboxylase TERM 185 298095 - 298105 + G 70 -5.4 -4.56607 | overlap 298101 ATTAATATATATTTA GCTA TTG TAGC TTTTCTACTTGCTAG TERM 186 298160 - 298148 - g 76 -3.5 -5.4756 | AATCTCAACAAAAAA TTTAA GTA TTAAA CCTGAATATTTATCT pssA 297543 - 298307 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 187 298967 - 298949 - g 91 -4.6 -5.8901 | ATAGAAAATAAAAAA GTAACCTT AAG AAGTTTAC AAAATACTAAAATTA emrA 298319 - 299371 + | multidrug resistance protein A TERM 188 300000 - 300012 + T 70 -4.9 -4.90519 | TTAATTATTTGCCAC TTAAC TCT GTTAA TTCTTTTTTTAGTTT RT0236 300192 - 299989 - | hypothetical protein RT0237 300431 - 300189 - | BolA-like protein TERM 189 301643 - 301621 - g 70 -6.4 -4.07786 | TAGAAAATGGAGAAA TAGCTCAATT TTT AATTGATCTA AAAGTGAGTGGGCTG RT0238 300486 - 301709 + | hypothetical protein TERM 190 302804 - 302834 + G 77 -7.8 -4.08767 | opp_overlap 302812, overlap 302805 302807 TAGAATTAGATTTCG GTATTAAAGCTATT AAA AATGGCTTTAATAA TTTTAAAGGAGTAAA TERM 191 302805 - 302833 + G 87 -11.3 -3.05046 | opp_overlap 302812, overlap 302804 302807 AGAATTAGATTTCGG TATTAAAGCTATT AAA AATGGCTTTAATA ATTTTAAAGGAGTAA TERM 192 302807 - 302831 + G 76 -9.5 -3.08211 | opp_overlap 302812, overlap 302805 302804 AATTAGATTTCGGTA TTAAAGCTATT AAA AATGGCTTTAA TAATTTTAAAGGAGT TERM 193 303174 - 303188 + G 71 -8.6 -2.87405 | opp_overlap 303171, overlap 303171 303169 CGATAAGGCAAATTT TCTAGC AGA GCTAGA TGATGTTGTTAGTGT murC 301873 - 303369 + | UDP-N-acetylmuramate--L-alanine ligase murB 303380 - 304267 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 194 305138 - 305120 - g 81 -4.6 -5.38951 | overlap 305123 AATTTATATAAAAAA TTACTGAT AGA ATCAGAAA AAATTTATAAAACAA ddl 304379 - 305344 + | D-alanine--D-alanine ligase ftsQ 305341 - 306141 + | cell division protein FtsQ ftsA 306331 - 307566 + | cell division protein FtsA RT0244 308194 - 307688 - | hypothetical protein TERM 195 307879 - 307920 + g 70 -8.9 -2.63102 | opp_overlap 307888, overlap 307881 307888 CTTGTCCTATAGTAT TAGCAGAAACAGTAGGGCT ATAA ACCTCTACTGTTTTTCCTA TCATATCCGAGTAAT TERM 196 307911 - 307888 - G 71 -6.8 -4.00038 | gap 1, opp_overlap 307888 307881 307879 TAGTATTAGCAGAAA CAGTAG-GGCT ATA AACCTCTACTG TTTTTCCTATCATAT TERM 197 307888 - 307911 + g 75 -6 -4.83269 | opp_overlap 307888, overlap 307881 307879 TAGTATTAGCAGAAA CAGTAGGGCT ATAA ACCTCTACTG TTTTTCCTATCATAT cycM 308711 - 308184 - | cytochrome c TERM 198 308513 - 308528 + g 77 -9 -3.63569 | CAGTTTTCATCACTT CCGGTA TATT TACCGG TTCTTGCACGATTAC lpxC 310501 - 309632 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 199 310572 - 310550 - R 86 -9.4 -4.17516 | opp_overlap 310553 310555, overlap 310553 TTCAAATTATACAAA TAATATTTTG TTA CAAAATATTA CATAATAGCCATGTG TERM 200 310569 - 310553 - R 71 -6.7 -4.19324 | opp_overlap 310553 310555, overlap 310550 AAATTATACAAATAA TATTTTG TTA CAAAATA TTACATAATAGCCAT RT0247 311820 - 310675 - | hypothetical protein TERM 201 311529 - 311501 - G 72 -6.3 -4.23434 | opp_overlap 311523, overlap 311511 311516 GAAAAGATTCCAAAA TTAATTAAAATAA AAT TAATTTTAATTAA AGTATAATTATTTAA rne 312244 - 314295 + | ribonuclease E TERM 202 315639 - 315660 + F 76 -5.9 -4.87786 | GATAATTTCTTTAAT CTTGCTAAT GTGT ATTAGCCAG TTTTTATACAATTCA rluC 316021 - 316932 + | pseudouridine synthase TERM 203 316983 - 316994 + F 70 -4.4 -5.07275 | overlap 316973 TATTCGTATCATCAG GTAC TAGT GTAC TTTTTCTGTATATCA TERM 204 317648 - 317671 + G 78 -3.3 -5.60993 | gap 1, opp_overlap 317648, overlap 317651 ATGATTATCGAAAAG GTT-GCTAAA AAAGA TTTAGCTAAC TTTTTTTATGACGAA TERM 205 317943 - 317931 - g 72 -4.9 -4.95957 | opp_overlap 317937, overlap 317921 TAAATGAAGGAAAAA TTCTT TCT AAGAA GTCGTATAAACTTAT TERM 206 318093 - 318074 - g 70 -6.4 -4.17657 | CATCATACTGGAAAA GCACTTGG AATA CAAAGTGC AGCAGGGTATATTTT pbpE 317009 - 318262 + | penicillin binding protein 4* xthA1 318271 - 319056 + | exonuclease III pdhA 319148 - 320128 + | pyruvate decarboxylase TERM 207 320374 - 320358 - g 70 -8.1 -3.10053 | AGAGATGTTAAGAGA TGACAAA GTT TTTGTCA TAGGCGAGGAAGTTG TERM 208 321064 - 321053 - g 86 -3 -5.89827 | opp_overlap 321053 AATCAGTAAAAAAAA CTAA TCGT TTAG TTATAGTAGAAGAAG TERM 209 321226 - 321214 - g 70 -4.1 -4.91712 | GTTAATTTAGAAAAA TTAGC TAT GCCAA GTGCCAATGATTTAA pdhB 320299 - 321279 + | pyruvate dehydrogenase subunit beta TERM 210 321376 - 321391 + T 74 -4.8 -5.24129 | opp_overlap 321375 321378 321389 TACACATAAGTTAAT TAGTTT TCTA AAACTA TTTTTTATCAAAACA typA 323579 - 321762 - | GTP-binding protein TypA (tyrosine phosphorylated protein A) TERM 211 324299 - 324316 + H 73 -2.7 -5.78622 | overlap 324297 TTTTAAGATTGTTTA GTACATT TACT ATTGTAC TTTTTTTTGCAATAA TERM 212 324567 - 324550 - g 72 -4.9 -4.91084 | AATAAAATTGAAAAA CTGAATC ATAA AATTCAG GAAGATATTGCTGCA RT0255 324421 - 324927 + | hypothetical protein icd 325036 - 326487 + | isocitrate dehydrogenase TERM 213 326837 - 326851 + G 74 -8.6 -3.28712 | CAACTCATGCACTAG GCAAAG CAT CTTTGC TTATGAAAAACAGAA RT0257 326584 - 326904 + | putative monovalent cation/H+ antiporter subunit G TERM 214 327205 - 327215 + G 72 -6.8 -4.07133 | overlap 327194 GCAATGACCGAAGCG GCAC TTG GTGC TTGTTTATCAACATG RT0258 327004 - 328050 + | putative monovalent cation/H+ antiporter subunit B ccmB 328031 - 328690 + | heme exporter protein B RT0260 328758 - 329216 + | hypothetical protein petA 329233 - 329766 + | complex III (mitochondrial electron transport) TERM 215 329921 - 329959 + G 72 -8.4 -3.27498 | TAGGTTCTATTGCCG GTATTGCATTAGTGAT CCAGATC ATCACTGGTGTAATAC TTGCTATGCACTATA petB 329773 - 330969 + | complex III (mitochondrial electron transport) TERM 216 331111 - 331095 - f 83 -6.7 -5.16071 | opp_overlap 331094 331110 AACCAGTAAGAAAAA TAGTATA CTT TATACTA CTAATTTAATAAATA fbcH 331424 - 332179 + | cytochrome c1 heme protein precursor RT0264 332686 - 333177 + | HSP22-like heat shock protein prfB 334501 - 333479 - | peptide chain release factor 2 TERM 217 335494 - 335514 + G 71 -6.9 -3.87627 | overlap 335484 335493 TGTTGGTTTTTTTAC TCCGAAAAA ACA TATTTCGGA TGTTTTATATGCAGG lepA 334763 - 336565 + | GTP-binding protein LepA TERM 218 337521 - 337503 - T 72 -6.2 -4.43392 | opp_overlap 337502 337503, overlap 337494 337519 TTAAAAGTAAAAGAA TTATTTTA CAG TAAAATAA ATTATTTAAAAACAC RT0268 338362 - 337676 - | hypothetical protein RT0269 339527 - 338385 - | hypothetical protein RT0270 341040 - 341273 + | hypothetical protein TERM 219 342169 - 342181 + T 70 -4.9 -4.85894 | opp_overlap 342169 TCTTGTTAAATTAGA TACTT TTT AAGTA TTTTATATTTGCTTT rodA 343550 - 342450 - | rod shape determining protein TERM 220 343310 - 343289 - G 74 -5.2 -4.87291 | opp_overlap 343273 343271 CAGTTGAACCAAAAA GCTCTACT GCTATT AGTAAAGC TAGTGCACAAAAATA ptrB 345702 - 343648 - | protease II RT0273 347314 - 345773 - | putative monovalent cation/H+ antiporter subunit D RT0274 349424 - 347967 - | putative monovalent cation/H+ antiporter subunit D RT0275 350768 - 349476 - | putative monovalent cation/H+ antiporter subunit D RT0276 351421 - 351086 - | putative monovalent cation/H+ antiporter subunit C TERM 221 351306 - 351328 + g 76 -9.2 -3.14989 | opp_overlap 351302, overlap 351305 351302 AAAAATAGTAATACT GGACTTTGAA ATA TTCCAAGTCC TATAATTTTATGAAT trbG 352291 - 351539 - | VirB9-like conjugal transfer protein precursor RT0278 352991 - 352293 - | VirB8-like protein of type IV secretion system RT0279 353439 - 353618 + | hypothetical protein RT0280 353669 - 354400 + | VirB8-like protein of the Type IV secretion system virB9 354387 - 354863 + | VirB9 protein precursor of the type IV secretion system virB10 354946 - 356397 + | VirB10 protein of the type IV secretion system virB11 356394 - 357398 + | VirB11 protein of the type IV secretion system TERM 222 357918 - 357938 + G 74 -8.3 -3.65135 | overlap 357919 GCTTATTAATGTTTG GCGGCAATT AAA AATTGCCGA TTATAATTATTTGAA TERM 223 357919 - 357937 + G 89 -11.8 -2.78358 | overlap 357918 CTTATTAATGTTTGG CGGCAATT AAA AATTGCCG ATTATAATTATTTGA virD4 357721 - 359496 + | VirD4 protein of the type IV secretion system gppA 359505 - 360917 + | guanosine pentaphosphate phosphohydrolase RT0286 362555 - 363442 + | hypothetical protein TERM 224 364184 - 364168 - g 86 -9.5 -4.00124 | opp_overlap 364166 CACCTGATAATCAAA TTGCTGA GTT TCAGCAA TCTACGTTTTTAAAT RT0287 363426 - 364250 + | hypothetical protein TERM 225 364577 - 364587 + G 71 -6.8 -3.89956 | overlap 364582 ATTGAAAATGGTTTT CCGA CTA TCGG TTTGATATATCATCC cysQ 364253 - 365029 + | 3'(2'),5'-bisphosphate nucleotidase CysQ mutS 367811 - 365136 - | DNA mismatch repair protein TERM 226 367155 - 367141 - G 78 -4.3 -5.47399 | TTAATTGCAAAAAAA CTATC GACCT GATAG GTAATACGACAATTA rpiB 368464 - 368030 - | ribose-5-phosphate isomerase B nlpD 368701 - 369333 + | outer membrane antigenic lipoprotein B precursor TERM 227 369989 - 369975 - f 71 -7.1 -3.99275 | CTATAGAATATTAAA CGTGG TTAAG CCACG TGGTAATACCTGATA thyX 370026 - 370910 + | FAD-dependent thymidylate synthase TERM 228 372096 - 372109 + G 73 -8.1 -3.5365 | GCATCTCCCAGCTGG TCGCC TAGA GGCGA TTATATAGCATTTAC tolB 371082 - 372413 + | translocation protein TolB rpoH 373433 - 372552 - | RNA polymerase factor sigma-32 RT0295 375039 - 374074 - | hypothetical protein TERM 229 374679 - 374666 - G 72 -8.1 -3.33782 | opp_overlap 374666 374665, overlap 374664 AAATATATTATAATA GCTCC TTCT GGAGC ACTTTTCATTGTTTC trmU 375269 - 376345 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 230 377042 - 377052 + G 76 -5.4 -5.09259 | TTTATAAAAATGGCA GCAA TAT TTGC TTTTGTTTTGGCATC RT0297 376475 - 377881 + | AtrC1-like cationic amino acid transporter protein hisS 377945 - 379183 + | histidyl-tRNA synthetase TERM 231 380462 - 380446 - f 70 -4.5 -4.98255 | opp_overlap 380446, overlap 380448 CTGTAACGATAAAAA TACTATT AGC AATAGCA TTTGATGAGTATCAT tolQ 380949 - 381674 + | TolQ protein tolR 381674 - 382105 + | TolR protein RT0301 382095 - 383057 + | hypothetical protein TERM 232 383293 - 383272 - f 74 -5.9 -4.65838 | TATAGATTTTAAAAA CAGCATTTA CAAG TAAAAGCTG CGAAATAAACTGTAG spoTa 383652 - 384359 + | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTa proP2 385626 - 384310 - | proline/betaine transporter ProP2 aprE 387296 - 385761 - | alkaline proteinase secretion protein TERM 233 385855 - 385881 + g 71 -2.2 -5.37593 | overlap 385856 ACGATTTGCACTTCA GCTTGCATACCA GGG TGTAATGCAAGA TTTTTTACTTTAGCA TERM 234 386531 - 386575 + g 86 -2.9 -6.10489 | overlap 386532 386536 GATCTTGATACACTG CAGCAGTTTTAGAGGCAGAAA TTT TTTTTGCTTCTAAACCTTCAA TTTTTTTTTCAAGTT TERM 235 386532 - 386574 + g 72 -6.4 -4.23853 | overlap 386531 386536 ATCTTGATACACTGC AGCAGTTTTAGAGGCAGAAA TTT TTTTTGCTTCTAAACCTTCA ATTTTTTTTTCAAGT TERM 236 386536 - 386570 + g 85 -10.2 -3.66782 | overlap 386532 386531 TGATACACTGCAGCA GTTTTAGAGGCAGAAA TTT TTTTTGCTTCTAAACC TTCAATTTTTTTTTC aprD 389240 - 387489 - | alkaline proteinase secretion ATP-binding protein TERM 237 388529 - 388517 - G 70 -5.5 -4.22276 | overlap 388514 AAAAATTAGAAATAA CACCG TTA CGGTA GCTGGCAACTGATTG asd 390264 - 389248 - | aspartate-semialdehyde dehydrogenase TERM 238 389597 - 389615 + g 74 -3.2 -5.47159 | overlap 389607 TGAGTGCCCATAATT TTGCTT AGTTCAA AAGCAA TTTTTGTTTCTTCAG pkcI 390619 - 390257 - | protein kinase C inhibitor 1 RT0308 391110 - 390727 - | hypothetical protein TERM 239 391056 - 391069 + g 81 -2.5 -5.80817 | opp_overlap 391056, overlap 391056 AGCCTTCTTCAAGAA TAATA AAAT TATTA TTTTTTTGTGTTGAG hslV 391377 - 391925 + | ATP-dependent protease peptidase subunit TERM 240 392166 - 392153 - g 71 -6.7 -3.87576 | overlap 392151 GGAAAAACAGAAATA GCAAG ACGC CTTGC AAAATTGACTAATTC TERM 241 393210 - 393198 - g 71 -4.9 -4.83715 | opp_overlap 393198 AAGTCAAAAAAATAA TTATC GAT GATAA ATTTGTAGAAAATCA hslU 391922 - 393274 + | ATP-dependent protease ATP-binding subunit lpxB 393926 - 395068 + | lipid-A-disaccharide synthase RT0312 395599 - 396630 + | hypothetical protein cyaY 396596 - 396937 + | frataxin-like protein RT0314 397194 - 397355 + | hypothetical protein TERM 242 397872 - 397893 + G 74 -6.7 -4.24948 | gap 1, opp_overlap 397870 CAATTACAATGCATA GCG-TAATAC TTT GTATTATCGC TTTTACATATAGTCC RT0315 397709 - 398281 + | BioY family protein gltX 400888 - 399542 - | glutamyl-tRNA synthetase topA 403324 - 400985 - | DNA topoisomerase I TERM 243 402266 - 402287 + g 71 -2.3 -5.38497 | gap 1, overlap 402267 402276 ATTTGTTGGTCTTAT TGCTTCATGA GCT TCTTGA-GCA TTTTTTACTTTGGAT TERM 244 403464 - 403478 + r 77 -7.2 -4.47873 | opp_overlap 403462 403464 ATAATAATTCAAATA GTAGTA GTA TACTAC TTTTGTAACTGTTCT TERM 245 404410 - 404426 + r 70 -7.3 -3.79251 | opp_overlap 404392 CGTGAATAAGTCACG GTATAGC AGT GCTGTAC TTTAATGATACAGTA tdpX1 405050 - 404448 - | thioredoxin peroxidase I RT0319 406067 - 405132 - | hypothetical protein TERM 246 405616 - 405602 - G 70 -8.6 -2.61681 | overlap 405601 CTTTAATTTCATAAC GCATAC ATT GTATGC CCCAATTTATTGAAG RT0320 408064 - 406502 - | hypothetical protein TERM 247 408386 - 408412 + G 81 -10.2 -3.20326 | opp_overlap 408383 408384, overlap 408391 ATAGTAATGAAATTT GCTGACAAACTG AAA CAGTCTGTTAGC TTGCCTATATATTTA RT0321 408107 - 408577 + | Holliday junction resolvase-like protein TERM 248 409331 - 409318 - f 70 -3.9 -5.18995 | opp_overlap 409318 AATATAAGATAAAAA GTTAA ATCT TTAAC TTTAAATATGCGATC rmlD 409600 - 410454 + | dTDP-4-keto-L-rhamnose reductase. RT0323 410487 - 411512 + | sugar epimerase rffE 411505 - 412635 + | UDP-GlcNAc-2-epimerase. TERM 249 412898 - 412910 + G 71 -4.9 -4.76644 | opp_overlap 412909 ATTGCCCGATAAATC TATTG ACT CAATA TTTTTAATAGATGTT TERM 250 413104 - 413088 - g 88 -9.5 -4.06384 | opp_overlap 413086 TGGCAAGAGCATAAA TCTGGAT GGT ATCCAGA AGATTTTCCTGGATG TERM 251 413220 - 413210 - g 72 -2.6 -5.4833 | TTATGCAATAAAAAA TATA GTA TATA CAGAAAATTATTTTA RT0325 412632 - 413753 + | hypothetical protein RT0326 413782 - 415005 + | glycosyltransferase TERM 252 415954 - 415965 + G 73 -3.6 -5.31275 | TTACATATTTTGCTT CTGG TAGG CCGG TTTTTTGTCATGCAC RT0327 415002 - 416213 + | glycosyltransferase RT0328 416200 - 417237 + | hypothetical protein TERM 253 417495 - 417517 + G 74 -7 -4.20368 | opp_overlap 417495, overlap 417498 ATGAAAGGAGAATAT TTTTCATGGC TTA GCCATGATGA TTTATATTACCCTAA TERM 254 417498 - 417514 + G 85 -10.9 -3.11182 | opp_overlap 417495, overlap 417495 AAAGGAGAATATTTT TCATGGC TTA GCCATGA TGATTTATATTACCC RT0329 417234 - 418190 + | glycosyltransferase RT0330 418166 - 419182 + | WaaG-like sugar transferase RT0331 420192 - 419194 - | efflux transporter RT0332 421069 - 420293 - | hypothetical protein RT0333 421837 - 421079 - | hydrolase RT0334 421870 - 423039 + | WaaG-like sugar transferase rpsD 425030 - 424413 - | 30S ribosomal protein S4 TERM 255 425107 - 425145 + r 72 -8.6 -3.24858 | opp_overlap 425110, overlap 425110 TCATTGATTTTAACC TAATATTTTTGAATTAAA ATA TTTAATTAAAAAATATTG TATATTAGTTCTTTA TERM 256 425110 - 425142 + r 76 -8.1 -3.73512 | opp_overlap 425110, overlap 425107 TTGATTTTAACCTAA TATTTTTGAATTAAA ATA TTTAATTAAAAAATA TTGTATATTAGTTCT TERM 257 425142 - 425110 - R 72 -8.1 -3.18274 | opp_overlap 425107 425110 TTGATTTTAACCTAA TATTTTTGAATTAAA ATA TTTAATTAAAAAATA TTGTATATTAGTTCT asmA 429042 - 426547 - | outer membrane assembly protein AsmA TERM 258 427192 - 427208 + g 76 -3.8 -5.45802 | ATCAGTTTTAAAGCT TAATAG CCCAT CTATTA TTTTTATTTTACCAG rimM 430102 - 429605 - | 16S rRNA-processing protein RT0338 430167 - 432794 + | hypothetical protein xseB 432809 - 433051 + | exodeoxyribonuclease VII small subunit TERM 259 433470 - 433453 - T 73 -4.2 -5.20735 | TCAACAAAAAATAAA GACATA GTAAAT TATGTC ATGATACATATTTGA mpg 434699 - 434028 - | 3-methyladenine DNA glycosylase RT0341 435208 - 434960 - | hypothetical protein nuoE 435735 - 435223 - | NADH dehydrogenase subunit E nuoD 437045 - 435831 - | NADH dehydrogenase subunit D nuoC 437812 - 437219 - | NADH dehydrogenase subunit C TERM 260 437600 - 437610 + g 78 -4 -5.4588 | TAATAAGTTATATAC GATT TCA AATC TTTTTTCTCGTTTTG nuoB 438314 - 437799 - | NADH dehydrogenase subunit B nuoA 438690 - 438319 - | NADH dehydrogenase subunit A RT0347 440034 - 438817 - | hypothetical protein TERM 261 439526 - 439509 - G 71 -7.1 -3.7659 | AGAACAAAATGATAA TTACTAC CCAA GTAGTAA TGGAAAGTAAAGCAC TERM 262 439600 - 439571 - G 71 -7.3 -3.71213 | ATATATAAGCCGAAA TGAGTTTTGAACA TTCT TGTTAAAAACCCA TGAGAAGAATATTCG TERM 263 439966 - 439954 - G 72 -4.1 -5.01676 | AAGCAAAAAAAATAA TACAG TAG CTGCA ATCGATAAGCCTGTA RT0348 440502 - 440035 - | hypothetical protein xerD 441105 - 442025 + | site-specific tyrosine recombinase XerD TERM 264 442456 - 442446 - g 72 -5.4 -4.72473 | TTAACCAAAAAATAA TGCA ACA TGCA GCAGATTTAGTGAAC RT0351 442106 - 443101 + | hypothetical protein TERM 265 443665 - 443653 - g 73 -3.5 -5.18726 | opp_overlap 443658 GTTTTACAAGAAAAA TTTTA TTC TAAAA GAAATTCTAAAGATT RT0352 443221 - 444384 + | hypothetical protein fabI 445358 - 444573 - | enoyl-(acyl carrier protein) reductase lnt 445435 - 446925 + | apolipoprotein N-acyltransferase TERM 266 447003 - 446988 - f 70 -4.8 -4.75404 | opp_overlap 446988 AAAGTTCATTAAAAA CTTAAA ATAA TTTAAG TTTATTATTCAATAA TERM 267 447460 - 447470 + F 70 -4 -5.24129 | opp_overlap 447467 TGTAAAATCTACTGT GTAA TAA TTAC TTTTTTGTAAGCAAA TERM 268 448221 - 448203 - f 73 -9 -2.85896 | overlap 448200 448206 TGCAGTAATCAATCA CAAGATTT TAA AAATCTTG AAATCAGAATTTTGA TERM 269 448590 - 448574 - f 70 -3.8 -5.25699 | opp_overlap 448574 ATCATACAACAAAAA TTTCAA TAGCT TTGAAA TTTATTTACAGATAG RT0355 448819 - 449742 + | hypothetical protein RT0356 449747 - 450589 + | ABC transporter permease protein RT0357 450586 - 451326 + | ABC transporter ATP binding protein TERM 270 451693 - 451709 + T 76 -8.1 -3.82627 | opp_overlap 451693 451695, overlap 451691 451704 ACTTATGCAAGATTA TACTTAG TAT CTAAGTA TCTTATTTTCTATTT RT0358 452991 - 452476 - | hypothetical protein TERM 271 453119 - 453099 - H 70 -4.1 -5.15969 | opp_overlap 453104, overlap 453104 TTGCAATTTAAAAAA TAAAACATA AAT TATGATTTA TAGAATTTTTTACTG TERM 272 453114 - 453104 - H 72 -4 -5.43553 | opp_overlap 453104, overlap 453099 ATTTAAAAAATAAAA CATA AAT TATG ATTTATAGAATTTTT lysK 453256 - 454836 + | lysyl-tRNA synthetase RT0360 454866 - 455837 + | hypothetical protein TERM 273 456414 - 456402 - g 73 -3.5 -5.24796 | CTTATAGAAGAAAAA TTAAA ATC TTTAA TGGATATACCAGTAT tme 455946 - 458249 + | malic enzyme TERM 274 459825 - 459810 - g 70 -6.2 -4.16837 | GATAATCATAAAGAA GAACTT TCAA AAGTTC TGGAGGTACAAAGAA RT0362 458514 - 459878 + | Sec7-domain-containing protein TERM 275 459921 - 459888 - f 70 -7.7 -3.36655 | opp_overlap 459889 459890, overlap 459884 459889 GTATAATTAAACATA GCTTACAATACTAAT AATT ATTAGTATTGTAAAT TTGATTTAATGATTA TERM 276 459889 - 459920 + F 82 -9 -4.12225 | opp_overlap 459888 459884 459889, overlap 459890 TATAATTAAACATAG CTTACAATACTAAT AATT ATTAGTATTGTAAA TTTGATTTAATGATT TERM 277 459920 - 459889 - f 83 -11.2 -2.6127 | opp_overlap 459889 459890, overlap 459888 459884 TATAATTAAACATAG CTTACAATACTAAT AATT ATTAGTATTGTAAA TTTGATTTAATGATT TERM 278 459890 - 459919 + F 90 -12.5 -3.06251 | opp_overlap 459889 459888 459884, overlap 459889 ATAATTAAACATAGC TTACAATACTAAT AATT ATTAGTATTGTAA ATTTGATTTAATGAT TERM 279 461308 - 461326 + G 77 -9 -3.61219 | ATTTAATATGTTTTA TCCTATTA TAT TAATAGGA TTTGCAGCATTTTAT proP3 460352 - 461572 + | proline/betaine transporter ProP3 RT0364 462193 - 461966 - | hypothetical protein mdh 464257 - 463313 - | malate dehydrogenase tlcB 466456 - 464933 - | ADP/ATP carrier protein 2 TERM 280 465368 - 465332 - G 78 -3.1 -5.63103 | opp_overlap 465350 TGTGAATGAAAAAAA TATAACACCTGCTACAA ACA TCATAATTGGTGTTATA ATAGCACCCCAAAAC pyrG 468452 - 466701 - | CTP synthetase TERM 281 468071 - 468052 - G 72 -4.4 -5.05116 | gap 1 TCACAAATAATAAAA TCAAA-ACC ATT GGTATTTGA CATAATAAAATCTTT TERM 282 468487 - 468501 + r 70 -2.8 -5.52909 | TTATTAATTTTCCCT GCAAAA TTT TATTGC TTTTTTTAAATCTTC kdsB 469200 - 468475 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 283 469323 - 469337 + H 75 -3.6 -5.49569 | overlap 469324 AATAGCTATGTTGTC TTACAA AGT TTGTAG TTTTTTGTATTAATC TERM 284 469553 - 469537 - H 72 -8.7 -2.63301 | overlap 469539 CAGATGGTTAGAGCA CACGCCT GAT AAGCGTG AGGTCGGAAGTTCAA TERM 285 470018 - 470036 + H 72 -6.2 -4.43307 | ATTTGCTTTAAATTT TTTTAATT AAC AATTAAAA TTATTTTGTTAACAG TERM 286 470097 - 470085 - H 77 -3.5 -5.72207 | TTTAAAGGAAAAAAA TATTT GTT AAATA CTGTGAGCTATTATA TERM 287 470408 - 470420 + H 73 -7.7 -3.73534 | overlap 470399 CAACGTTGCATCTTT GTGCA TTG TGCAC TTCTTCATGAAATTG folE 471509 - 472081 + | GTP cyclohydrolase I proS 472226 - 473512 + | prolyl-tRNA synthetase TERM 288 473544 - 473524 - f 79 -9.9 -2.69674 | opp_overlap 473516, overlap 473516 473514 473521 473526 ATAGACAGTATATGA TACTACTTA TCC TAAGTAGTA CACCAAAATCTTTTG TERM 289 474199 - 474209 + G 85 -2.6 -5.9362 | ATATGAAAAATTTTA TAAA ATA TTTA TTTTTTTCTGTTTTA RT0373 474114 - 474401 + | hypothetical protein ruvA 474407 - 475009 + | Holliday junction DNA helicase motor protein ruvB 475073 - 476101 + | Holliday junction DNA helicase B TERM 290 476686 - 476674 - g 71 -4.9 -4.79949 | TGGGTAAAAAAATAA GAAAA ATC TTTTC ACAATCACAAGAGGA TERM 291 476850 - 476836 - g 90 -7.2 -5.61596 | AGTTTTATAAAAAAA CATCTA AGT TAGATG CAATGGTTTCGCCAA msbA1 476094 - 477857 + | lipid A export ATP-binding/permease protein MsbA dacF 479212 - 480132 + | D-alanyl-D-alanine carboxypeptidase. rlpA 481210 - 480248 - | rare lipoprotein A precursor TERM 292 481030 - 481040 + g 88 -4 -5.79595 | overlap 481028 TTTCAAACTTGAATG TTGT ATA ACAA TTTTTTATTTTACAG RT0379 481805 - 481188 - | periplasmic protein ispA 482541 - 481999 - | intracellular septation protein A RT0381 483418 - 482570 - | hypothetical protein RT0382 483808 - 483428 - | hypothetical protein RT0383 485130 - 484129 - | hypothetical protein TERM 293 484383 - 484361 - G 74 -8.6 -3.35679 | overlap 484366 CCTGTGGATTTAGAA TCAAATAGTA TTT TACCATTTGA TAAACGAGTAATTTT pcaH 485271 - 485897 + | protocatechuate oxygenase tlpA 486082 - 486744 + | thiol-disulfide interchange protein RT0386 486737 - 487651 + | protease dut 487653 - 488099 + | deoxyuridine 5'-triphosphate nucleotidohydrolase RT0388 488245 - 490200 + | soluble lytic transglycosylase domain-containing protein TERM 294 490211 - 490196 - f 76 -6.2 -4.8048 | opp_overlap 490195 490190 490196 GTGCTATAGTAAAAA GCTAAT TTTT ATTAGC ATTTAATTGTGATAT RT0389 490264 - 491013 + | hypothetical protein ldcA 491122 - 492075 + | carboxypeptidase IIW RT0391 494750 - 492156 - | hypothetical protein RT0392 496010 - 495171 - | hypothetical protein TERM 295 495552 - 495563 + g 74 -3 -5.47821 | TGCAAATGCTTCAGT TTTG CTTT CAAA TTTTTTTCGATACGT TERM 296 496910 - 496900 - H 71 -5.4 -4.62069 | GGTTTACGTGAAAAA GTTG AAA CAAC ATAGCTTACTATGCC TERM 297 499369 - 499381 + G 72 -6.3 -4.35116 | opp_overlap 499369 499364 TTTTAATGAATGATA CCATA CTA TATGG TTTTAATGTACAATC TERM 298 499409 - 499439 + G 75 -4 -5.24416 | ATCATCTTTTATTAG TGCACGTTTAAAGA AAA TCTTTACTCCTGCA TTTTTCTTGTCATTG TERM 299 500122 - 500108 - g 71 -7.2 -3.73402 | opp_overlap 500107 ATATGTTTCATTAAA TCTTTC AGG GAAAGA ATATAATATATATCG TERM 300 500648 - 500634 - g 70 -4.4 -4.98758 | AAAAATTTAGAAAAA TTTAAA CAA TTTAAA CAAGAAATAAAAACT RT0393 499359 - 500723 + | hypothetical protein lspA 500855 - 501445 + | lipoprotein signal peptidase RT0395 501466 - 501714 + | hypothetical protein murD 501879 - 503252 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase ftsW 503293 - 504426 + | cell division protein FtsW murG 504423 - 505580 + | N-acetylglucosaminyl transferase RT0399 505835 - 506491 + | hypothetical protein RT0400 510132 - 509116 - | glycosyltransferase TERM 301 509228 - 509246 + g 90 -7.6 -5.31877 | opp_overlap 509228 GCTGCTTGTAAAGGA TTATCTAT TAG ATAGATAA TTTTTTCTGCTAAAT TERM 302 511296 - 511284 - gH 76 -7.7 -3.91084 | TGAGTTTTAATGAAA CTTGG ATG CCAAG CCGTGATAGAATTTG dapF 510908 - 511720 + | diaminopimelate epimerase miaB1 511695 - 512960 + | tRNA-methylthiotransferase (MiaB protein) pheS 513084 - 514136 + | phenylalanyl-tRNA synthetase subunit alpha TERM 303 515876 - 515892 + G 74 -3 -5.47399 | opp_overlap 515868 AAAAATTTAGCACGA GCTATA AAAGA TATGGC TTTTTTTGAAGTTGG pheT 514133 - 516580 + | phenylalanyl-tRNA synthetase subunit beta dnaN 516585 - 517730 + | DNA polymerase III subunit beta RT0406 518076 - 518576 + | hypothetical protein TERM 304 519805 - 519791 - g 74 -7.2 -4.02606 | CAAAACAAAAAGTAA TCTCAA AAT TTGAGA CATTAGGTATAGGTA TERM 305 520480 - 520446 - g 86 -3.1 -5.89947 | gap 1, opp_overlap 520451, overlap 520451 520455 TAAATCTAAAAAAAA TATAATCGATCTTGAA ACAA TTCAAGAACAAT-ATA GTGCAGATGCTATTA TERM 306 520476 - 520451 - g 70 -5.5 -4.34951 | opp_overlap 520451, overlap 520446 520455 CTAAAAAAAATATAA TCGATCTTGAA ACAA TTCAAGAACAA TATAGTGCAGATGCT leuS 518641 - 521127 + | leucyl-tRNA synthetase TERM 307 521148 - 521162 + T 79 -3.6 -5.8096 | AATTATGTGAATGTC TTCTTG CTA TAAGAA TTTTTATTTTTTATC rnd1 521995 - 521384 - | ribonuclease D RT0409 522456 - 522133 - | hypothetical protein cdsA 523139 - 522453 - | CDP-diacylglycerol synthase. uppS 523779 - 523099 - | bactoprenyl-diphosphate synthase envZ 525240 - 523930 - | osmolarity sensor protein EnvZ ompR 525886 - 525218 - | response regulator protein OmpR ilvE 526015 - 526881 + | branched-chain amino acid aminotransferase TERM 308 527513 - 527543 + G 72 -4.7 -4.91109 | overlap 527515 527517 ATTTACCTATAATGT TATATTCCGCTCC AACTA GAAGCGGAGTAGA TTTTTCTGATGAGAC dapA 527113 - 527997 + | dihydrodipicolinate synthase smpB 527994 - 528452 + | SsrA-binding protein RT0417 528597 - 529397 + | hypothetical protein RT0418 529619 - 529419 - | hypothetical protein TERM 309 529729 - 529752 + r 71 -8.4 -3.07947 | opp_overlap 529728, overlap 529718 TCATGAAAAGATATT TTCTAATATA GCAT TATATTAGAA TGTTAGCCCTTATTA sucD 530775 - 529897 - | succinyl-CoA synthetase subunit alpha TERM 310 530276 - 530295 + g 74 -8.6 -3.22091 | TGTCCAAGTCCTACT GCAGTTGT CTGT GCAACTGC TTCATAAGTTAGAGT sucC 532073 - 530913 - | succinyl-CoA synthetase subunit beta TERM 311 532112 - 532100 - R 72 -4.9 -5.00196 | opp_overlap 532100 TTTTAAATAATAAAA TCTTA GTA TAAGA ATTAATTTGTAAACT RT0421 532862 - 532224 - | hypothetical protein TERM 312 532958 - 532927 - R 82 -10.6 -2.9162 | opp_overlap 532925 532924, overlap 532924 532932 TAATCTTTTAAAGTA TTTAATAAAAATAA AGAT TTATTTTTATTAAA AAATTATATTTAAGA rbfA 533540 - 533157 - | ribosome-binding factor A RT0423 533969 - 533544 - | hypothetical protein TERM 313 533706 - 533684 - G 88 -8 -4.88407 | opp_overlap 533684 533682 533680 533701 AATAAATTAAGAAAA TTATAAATAT TTC ATATTTATAA TATAATTTTGTTAAA TERM 314 534571 - 534582 + G 91 -4.4 -6.04378 | TAGCTTATATGACTT TTCC TATC GGAA TTTTTTTTATACTTT RT0424 534138 - 534659 + | hypothetical protein recR 534807 - 535406 + | recombination protein RecR TERM 315 535771 - 535761 - g 80 -6.8 -4.71776 | TAACATTTAATAAAA CTGC TCT GCAG TTAAAAATGGCATTA TERM 316 536321 - 536306 - g 77 -4.8 -5.2291 | ATAGTAGAACAAAAA CAATTA GAAT TAATTG AGCCTGGTGATCTTT RT0426 535490 - 536665 + | hypothetical protein ppnK 538901 - 538134 - | inorganic polyphosphate/ATP-NAD kinase TERM 317 538897 - 538909 + g 72 -4.9 -4.94262 | GCTATTTTATTTGTA TTCAT TAT ATGAA TTTCTTTTTAATATA RT0428 538987 - 540669 + | hypothetical protein TERM 318 540931 - 540914 - g 80 -2.1 -5.71712 | gap 1 TTTTATATAAAAAAA CTAACGTA CAA TAC-TTAG GTGATATTAAATTAC gpsA 540772 - 541734 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 319 541855 - 541830 - f 70 -7.7 -3.37895 | TGCAACATACAGTAA TTTGTTCACTA AATC TAGTGTACAAA ATCAATATACAATAT TERM 320 542213 - 542248 + F 100 -15.2 -4.28651 | opp_overlap 542209 542207 542204 542225, overlap 542204 CAATAATTAGATTTA TTTTCTATTAAATTAG ATAT CTAATTTAATAGAAAA TTTTCAAATTTTGAT RT0430 542365 - 543294 + | hypothetical protein TERM 321 544129 - 544118 - g 86 -3 -5.88061 | opp_overlap 544118 AAAAAATGAAAAAAA CAAA CACT TTTG ATCTTTATGAAATAA RT0431 543352 - 544224 + | hypothetical protein trxB1 544357 - 545289 + | NADP-thioredoxin reductase. TERM 322 545379 - 545365 - f 77 -7.2 -4.41047 | ATCTCGTAATTAAAA TGCATT AAA AATGCA AAATTTATATTAATA RT0433 546736 - 547578 + | glycosyltransferase TERM 323 548599 - 548578 - g 77 -4.5 -5.28983 | opp_overlap 548570 548568, overlap 548570 GTGAAAAGATAAAAA TTATCTCTT GTTT AAGTGATAA AGAAGAAGCAAGATA uvrD 547599 - 549575 + | DNA helicase II TERM 324 550050 - 550030 - f 70 -4.1 -5.19251 | CAATATCAAGAAAAA TGAAAATAT TTA ATAATTTCA AAGCACATGTGTTAA TERM 325 551448 - 551438 - g 86 -2.6 -6.00086 | AGATTAGAAAAAAAA TAAT GAA ATTA GTAAGCAATTAGAGC RT0435 550679 - 552044 + | hypothetical protein tdcB 553181 - 552180 - | threonine dehydratase TERM 326 555463 - 555447 - g 73 -3.7 -5.27335 | overlap 555448 GGTCTTAAAGAAAAA TTACTTG CAG CAAGTAG AGGAGGGATAAAAAC TERM 327 555462 - 555448 - g 71 -7.2 -3.75678 | overlap 555447 GTCTTAAAGAAAAAT TACTTG CAG CAAGTA GAGGAGGGATAAAAA lon 553281 - 555635 + | ATP-dependent protease La. TERM 328 561322 - 561312 - g 76 -5.4 -5.10877 | ACAAGAAATTAAAAA TGCT AAC AGCA TAGAAATTGCATCTA sca3 556234 - 563229 + | cell surface antigen Sca3 TERM 329 563271 - 563259 - T 74 -6.3 -4.64766 | CCGACATTGCAAAAA CACAA AAC TTGTG AATTAACTTTAGACA TERM 330 563402 - 563373 - T 74 -5.1 -5.22006 | opp_overlap 563375, overlap 563375 CTACTATAATAAAAA TATGTACGCTAAT CTTT ATTAGTGTACATC TAGTATAGAGCACTA TERM 331 563375 - 563400 + T 80 -9.9 -2.85351 | opp_overlap 563375 563373 ACTATAATAAAAATA TGTACGCTAAT CTTT ATTAGTGTACA TCTAGTATAGAGCAC TERM 332 563400 - 563375 - T 78 -7.7 -4.2328 | opp_overlap 563375, overlap 563373 ACTATAATAAAAATA TGTACGCTAAT CTTT ATTAGTGTACA TCTAGTATAGAGCAC idi 564982 - 563954 - | isopentenyl pyrophosphate isomerase TERM 333 564438 - 564458 + g 77 -7.7 -4.18161 | AGGTAATTAATAACT TCTTTTATC TTA GGTAAAAGA TTTTCCCAGTTTCTA glmU 567565 - 566819 - | N-acetylglucosamine-1-phosphate uridyltransferase. RT0442 568323 - 567565 - | hypothetical protein TERM 334 568359 - 568369 + r 82 -2.6 -6.32017 | AACCTTGTTTCGCTC TAAA CCT TTTA TTTTTTTTATTTATT rpmJ 568467 - 568342 - | 50S ribosomal protein L36 RT0444 568744 - 569532 + | hypothetical protein RT0445 569537 - 570028 + | hypothetical protein TERM 335 571997 - 572027 + G 100 -13.6 -3.02147 | opp_overlap 571997 571998, overlap 571992 GATGATTGATAAGAA TTTTGCAGATATTT TAG AAATATCTGCAAAG TGTGGTTATCTTACA TERM 336 572027 - 571997 - g 95 -11.4 -3.82824 | opp_overlap 571992 571997, overlap 571998 GATGATTGATAAGAA TTTTGCAGATATTT TAG AAATATCTGCAAAG TGTGGTTATCTTACA TERM 337 572026 - 571998 - g 100 -14.9 -2.89212 | opp_overlap 571997 571992, overlap 571997 ATGATTGATAAGAAT TTTGCAGATATTT TAG AAATATCTGCAAA GTGTGGTTATCTTAC RT0446 571983 - 572663 + | hypothetical protein TERM 338 573440 - 573430 - g 70 -5.4 -4.55295 | opp_overlap 573430 TGCTTGATAAAGAAA TTGC TAA GCAA TTTATGACAATACAG pdhD1 572799 - 574178 + | dihydrolipoamide dehydrogenase RT0448 574305 - 574826 + | 5,10-methenyltetrahydrofolate synthetase. rnd2 575815 - 574970 - | ribonuclease D RT0450 576618 - 575827 - | hypothetical protein RT0451 576730 - 577590 + | hypothetical protein TERM 339 579000 - 578981 - g 73 -8.6 -3.11291 | opp_overlap 578981, overlap 578974 TCTACAAGTGCAATA GTCGCAAC TCTG ATTGCGAC TTGGATCAGTACTAG TERM 340 580880 - 580867 - g 71 -3.1 -5.1848 | AATTAATTTAAAAAA TACCC ATTT AGGTA ATAGAGTTAATTATA RT0452 578846 - 581596 + | two-component sensor histidine kinase TERM 341 582261 - 582278 + F 82 -8.5 -4.37527 | ATAGGGAATGTGTAT GCCAAAA TCCT TTTTGGC TTTTCGTGATTATAG TERM 342 582608 - 582636 + F 100 -12.1 -4.26344 | opp_overlap 582608 582615, overlap 582604 AGTATATGGGATTAA TTATAAACATTAA TAA TTAATGTTTATAA TTTTACTGGCCCTGT TERM 343 582636 - 582608 - f 93 -12.1 -3.17941 | opp_overlap 582604 582608, overlap 582615 AGTATATGGGATTAA TTATAAACATTAA TAA TTAATGTTTATAA TTTTACTGGCCCTGT hemC 582670 - 583569 + | porphobilinogen deaminase trpS 585989 - 584997 - | tryptophanyl-tRNA synthetase plsC 586060 - 586788 + | 1-acyl-sn-glycerol-3-phosphate O-acyltransferase RT0457 586848 - 587288 + | hypothetical protein TERM 344 587429 - 587449 + F 87 -9.8 -3.40297 | opp_overlap 587432, overlap 587432 TAAAGTTAATCCATT CAACACGA TTTAC TCGTGTTG TCTTCTCTGTGTGGT TERM 345 588250 - 588261 + G 88 -4.4 -5.68023 | opp_overlap 588250 TTATAAAATTATCAA TGGT GCTG ACCA TTTTTTTCGTTATAA RT0458 587681 - 588397 + | hypothetical protein TERM 346 588534 - 588553 + T 70 -3.6 -5.24989 | overlap 588536 AAATAAGATTCTATT GCCAAAAT GAAT ATTTTGTC TTTTTTCGTATCTAA RT0459 589513 - 588509 - | hypothetical protein TERM 347 588593 - 588615 + g 71 -2 -5.47821 | overlap 588596 TAATTCTTCGTAAAT TTGCTTATCT GAT AGAGAAGTGA TTTTTTTAAATAGCT TERM 348 589365 - 589355 - G 75 -4 -5.33124 | AATAATAAAACAAAA TACT AAT AGTA ATAATTCTAAAATAA RT0460 590186 - 589506 - | hypothetical protein TERM 349 589578 - 589591 + g 72 -5.3 -4.83518 | TAGATAGTTTAATTT CTCTA AAAT TAGAG TTTTATCTTGTTCTT TERM 350 589603 - 589625 + g 85 -5.6 -5.35222 | AGAGTTTTATCTTGT TCTTTTGCTA TAA TCGCAGAAGA TTTTTTCTCAATTTT RT0461 590985 - 590170 - | hypothetical protein ampG1 592603 - 591272 - | murein peptide permease protein AmpG TERM 351 592758 - 592768 + H 70 -4 -5.2166 | opp_overlap 592758 TAGTAATGAGCTAAA GTAA TTT TTAC TTTTTTACATTGTTG TERM 352 593243 - 593233 - g 70 -4 -4.93318 | opp_overlap 593233 TAGAATGCATAAAAA TACA AAT TGTA TTATGGATATTGGAA RT0463 593138 - 594691 + | lipopolysaccharide 1,2-glucosyltransferase WaaJ TERM 353 595455 - 595491 + G 71 -3.2 -5.28942 | CATACTCCAGCCAAT CATATCAATTATTGTT ACTGC AGGAATAATTGCTATG TTTTTATTTAGAATA tlcC 594760 - 596265 + | ADP/ATP carrier protein 3 TERM 354 598021 - 597990 - g 95 -6.2 -5.8901 | gap 1 ACATAAAAGAAAAAA TTCTTGAGTTAATAC CAA GTATTAA-TCAAAAA ATATTAGAGGAATGT RT0465 596393 - 598063 + | hypothetical protein ispB 598143 - 599126 + | octaprenyl-diphosphate synthase RT0469 601199 - 599427 - | aminopeptidase TERM 355 600197 - 600174 - G 72 -8.3 -3.36515 | overlap 600172 TGTTAGTTTTAAACA GAGAGAATA TTCTGT TATTCTCTC ATGACTGTAAAAGTA potE 602561 - 601272 - | putrescine-ornithine antiporter TERM 356 602115 - 602134 + g 72 -5.1 -4.81734 | opp_overlap 602117 TGGAACAAATTTCAA TAGAGTT AAATAA AACTCTA TTTTTCCTGCTATTT TERM 357 602422 - 602405 - G 77 -8.5 -3.86431 | AACAAGAGAATACAA GTGCTAT ACTC ATAGCAC CAAATAATGACAGAA iscA2 603096 - 602764 - | iron-binding protein IscA/HesB iscU 603495 - 603100 - | scaffold protein iscS1 604774 - 603542 - | cysteine desulfurase iscS2 605977 - 604841 - | cysteine desulfurase protein IscS/NifS TERM 358 605283 - 605302 + g 81 -6.5 -5.08601 | ATTGCTAAAACATTT TCAGTAC CTGAGC GTACTGA TTTTTCTTGGCCTCC RT0475 607406 - 606540 - | hypothetical protein RT0476 608629 - 607961 - | glutathione S-alkyltransferase TERM 359 608205 - 608222 + g 71 -5.7 -4.40561 | opp_overlap 608197 608204, overlap 608197 608202 AAAGAAGTCATATAT TCTAAAT GATA ATTTAGA TTATTTTTGGCAGCA TERM 360 609022 - 609040 + H 73 -7.4 -4.14392 | TGTTGCCAACTTACC GGTGTGCT CTT ACCACACC TTTTCACCCTTACCG TERM 361 611650 - 611634 - g 81 -3.7 -5.55664 | GCAGTAGTAAAAAAA CTAGAAC AAC GTTATAG CTATAAATTTTCCTT ppdK 609438 - 612080 + | pyruvate phosphate dikinase TERM 362 613390 - 613404 + G 73 -5.7 -4.57581 | TTCATTATCATACTC CTGCA TCTAT TGCAG TTTCTTCTTTAAAAT addA 613098 - 613790 + | hypothetical protein RT0480 614027 - 614167 + | hypothetical protein RT0481 615405 - 614683 - | hypothetical protein TERM 363 614783 - 614794 + gF 78 -3 -5.51046 | opp_overlap 614783 GGGTTTGTATAAGTA TCTT CAGT AAGA TTTTTTATATCTTTC RT0482 615404 - 616234 + | hypothetical protein RT0483 617183 - 616338 - | hypothetical protein TERM 364 617317 - 617328 + H 76 -4.4 -5.33866 | opp_overlap 617317 TTTTTCTATAATACA CCAA AATT TTGG TTTTTTATAAATTTG RT0484 617672 - 618064 + | hypothetical protein sca4 621220 - 618161 - | cell surface antigen TERM 365 620436 - 620452 + g 74 -6.6 -4.35044 | CCTTCTTCATAGTGT GCAGTA AAATA TACTGC TTTATCTTTAGCTGG tlcD 623000 - 621462 - | ADP/ATP carrier protein 4 truB 623210 - 624088 + | tRNA pseudouridine synthase B rpsO 624114 - 624389 + | 30S ribosomal protein S15 pnp 624535 - 626772 + | polynucleotide phosphorylase/polyadenylase TERM 366 627394 - 627382 - g 71 -7.7 -3.44284 | overlap 627380 TTTTTATTAATAATA CCTGA ATG TCAGG AGGCTTCATTAATTG RT0490 626956 - 627915 + | sugar isomerase RT0491 627922 - 628527 + | hypothetical protein RT0492 628493 - 628924 + | hypothetical protein TERM 367 629106 - 629083 - g 78 -3.3 -5.63504 | AATCCTATAAAAAAA GAAATATAT TAACTG ATATATCTC TTCATATAAAACAAG RT0493 629037 - 629759 + | ABC transporter ATP-binding protein TERM 368 629951 - 629965 + G 76 -5 -5.14626 | opp_overlap 629951 TTAACAGAAGAAGTA GCTTAT AAA ATAGGC TTTTGTTTTGCTAAT exoC 629876 - 631369 + | phosphomannose mutase TERM 369 632498 - 632474 - g 76 -8.8 -3.46302 | opp_overlap 632478, overlap 632478 TAAGATATTTAAAGA TAAAGCAATT GATGA AATTGCTTTA ATAAAAAAACAATTT miaA 631818 - 632753 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 370 633556 - 633535 - T 77 -7.5 -4.16681 | AATATTATCGTAAAA TTGATTTAA ATAA TTAAATCAA GAATTATCTATGTAT RT0496 636421 - 633560 - | hypothetical protein TERM 371 633676 - 633696 + g 95 -8.5 -5.44721 | TACTTTTTGCTTCTT TTAATACAT CTG ATGTATTAA TTTTTTTAAACTCAT TERM 372 633961 - 633981 + g 85 -8.5 -4.4715 | CTCTATTATCACCTT TATCAAAAA GTT TTTTTGATA TTTTCTCGCTTAAAA TERM 373 635402 - 635429 + g 72 -8 -3.61398 | opp_overlap 635406 635407, overlap 635407 ATTTTCAATAATCCC TAAAGCAATATT TGGT AATATTGTTTTA TTATTAGCAAAAAAA TERM 374 635407 - 635424 + g 77 -5.7 -4.89477 | opp_overlap 635406 635407, overlap 635402 CAATAATCCCTAAAG CAATATT TGGT AATATTG TTTTATTATTAGCAA TERM 375 636336 - 636349 + g 74 -6.7 -4.29326 | GATAAATCTTTAATT GCACT CTTT AGTGC TTTATTAGCTTTAGA nrdF 637462 - 636488 - | ribonucleotide-diphosphate reductase subunit beta TERM 376 636773 - 636759 - G 70 -5 -4.65916 | overlap 636771 GCCAGTTCAATAAAA GCATCT TCA AAATGC ACAATAGTTGTACAC nrdA 639451 - 637628 - | ribonucleotide-diphosphate reductase subunit alpha TERM 377 639867 - 639845 - H 80 -9.4 -3.21416 | opp_overlap 639850, overlap 639850 TAGTGCTAGTAGTAA TATAACATTA AAA TAATGTTATA GACATCTTTAATCAC TERM 378 640012 - 639999 - H 73 -5.3 -4.82901 | TTTTTTTGATAAAAA GCTAA GTTA TTAGC ACAGTTAATAGAATT TERM 379 640128 - 640148 + H 80 -2.7 -6.06723 | TTTTACTCTTCATTG TTTTAGTAA AAA TTAATAAAA TTTTTTTTTCAAAAA RT0499 640260 - 640412 + | hypothetical protein TERM 380 640747 - 640731 - f 88 -8.1 -4.80453 | TTACTATAAAACAAA GCTAAAA ATA TTTTAGC ATCAAAAAAATTAAA trxB2 640916 - 641920 + | NADP-thioredoxin reductase. folD 642111 - 642968 + | methylenetetrahydrofolate dehydrogenase (NADP+) RT0502 643604 - 643047 - | hypothetical protein RT0503 644165 - 643815 - | sigma(54) modulation protein RT0505 645518 - 645384 - | hypothetical protein TERM 381 645501 - 645517 + g 85 -2.3 -6.09888 | opp_overlap 645501 ATAATTTATATAAAC TGCAAAA GTG TTTTCCA TTTTTTTTCTTCAGA clpP 646696 - 646091 - | ATP-dependent Clp protease proteolytic subunit TERM 382 646761 - 646731 - R 71 -7 -3.85603 | overlap 646729 TTGATTAAATAAAGA TGTGATACCATTCA TTG TCAATGGTATCAAA ATCAAAAGACTAACA rpsA 648558 - 646852 - | 30S ribosomal protein S1 TERM 383 647747 - 647765 + g 70 -3.8 -5.14965 | TCAAGTTGTTTTATA CCAAGTGA TAT TCTTTTGG TTTTTTCATCAAACT TERM 384 647988 - 648006 + g 72 -8.2 -3.21924 | opp_overlap 647987 647988 CTCTAGCTTCAGAAC GTGATTCT TCT AGGATCAC TCTTCTAGAAACTAC cmk 649468 - 648809 - | cytidylate kinase ihfB 651514 - 651272 - | integration host factor beta subunit RT0512 652428 - 651514 - | protease IV rho 653919 - 652567 - | transcription termination factor Rho RT0514 655576 - 654254 - | hypothetical protein TERM 385 655088 - 655106 + g 76 -5.4 -5.055 | overlap 655090 CATACCACCTGTTGG TTTTAAAG AAG CTTTAAGA TTTTTTAGACCTTCA recJ 657363 - 655603 - | single-stranded-DNA-specific exonuclease RecJ TERM 386 655995 - 656011 + g 74 -8.1 -3.57615 | opp_overlap 655998, overlap 655998 CTAATTTATTTATAC TAATGCT AAA AGCATTA TTTAAAAAATCTTGC prfA 658535 - 657468 - | peptide chain release factor 1 TERM 387 657940 - 657926 - G 71 -8.6 -2.78216 | overlap 657928 CAGCCTCAGGAAGTA CAGCAA CCG TTGCTG CTGAGGTATGAATAC pdhC 659931 - 658717 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 388 659635 - 659647 + g 76 -6.3 -4.63089 | overlap 659632 ATCTGTTTTGAGCGA TAGTG ATA CACTA TTATTTTTTGCAATA infC 660610 - 660053 - | translation initiation factor IF-3 RT0519 660993 - 660661 - | hypothetical protein RT0520 661153 - 660968 - | hypothetical protein birA 662408 - 661620 - | biotin--protein ligase RT0522 664348 - 662594 - | hypothetical protein TERM 389 662980 - 662958 - G 70 -4.3 -4.85599 | gap 1, opp_overlap 662958 CCGATTTTACAAAAA GATAATAGCA TTTT TGCT-TTATC GTTATGAGTCTCAAT TERM 390 663837 - 663856 + g 74 -9.4 -2.8458 | overlap 663836 663850 TTTTGGTTATATCTT GCTCTTAA TTCA TTAAGAGC CTTATCATTTTTAAC TERM 391 663941 - 663959 + g 77 -8.2 -3.74792 | opp_overlap 663941 663936 663945, overlap 663945 TTCCATTAAATCATA TAAAGGCG TAC CGTCTTTA TTTAACTGTATCATA sodB 665026 - 664397 - | superoxide dismutase folC 666421 - 665120 - | folate polyglutamate synthetase TERM 392 668403 - 668421 + r 75 -5.4 -4.96468 | opp_overlap 668403 CTTCAACGCTAAAAG CAGTAAAA ATC TTTTATTG TTTTATTTGCATTTA RT0525 668858 - 668721 - | hypothetical protein TERM 393 669487 - 669497 + H 79 -4 -5.73339 | opp_overlap 669487 GCACTCAACACATCA CATT ATT AATG TTTTTTTATAATTGT nuoN 669638 - 671014 + | NADH dehydrogenase subunit N RT0527 672536 - 671001 - | hypothetical protein hemB 673605 - 672613 - | delta-aminolevulinic acid dehydratase TERM 394 674258 - 674244 - R 70 -2.8 -5.50313 | overlap 674245 GATAAAAGGAAAAAA TTGCTT ACT AAGCAT GCTCAGAATTCACCT priA 676255 - 674309 - | primosome assembly protein PriA TERM 395 676257 - 676273 + H 82 -2.4 -6.19302 | TTTGCTATTCGCATA TATAAA TGTAT TTTATA TTTTTTTTATTATAT ubiX 676318 - 676890 + | aromatic acid decarboxylase dnaB 678118 - 679611 + | replicative DNA helicase TERM 396 681173 - 681162 - g 72 -4.4 -5.1383 | opp_overlap 681162 AATAATATACAAAAA CCAA GACT TTGG ATTTATTACAAGCCG TERM 397 681694 - 681670 - g 81 -3.8 -5.54264 | gap 1 AAATACTTAAAAAAA TAATTAG-CAA CAAA TTGACTAATTA TATAGATAATAGATA rluB 680982 - 681710 + | pseudouridine synthase RT0533 682218 - 682928 + | methylase TERM 398 684232 - 684221 - g 85 -5.8 -5.42164 | GAGAAATAAGAAAAA CTGC AAAA GCAG AAACAAGAATAAAAG radA 683023 - 684360 + | DNA repair protein RadA RT0535 684357 - 684692 + | hypothetical protein recO 684741 - 685451 + | DNA repair protein RecO RT0537 686003 - 686680 + | hypothetical protein TERM 399 686864 - 686848 - T 80 -9.5 -3.18849 | opp_overlap 686818 686850, overlap 686846 GTCACATTATTAAGA TACTGCA TTA TGCAGTA GATTACGCTTGTGAC RT0538 687124 - 686867 - | hypothetical protein infB 690901 - 688406 - | translation initiation factor IF-2 TERM 400 688528 - 688545 + g 79 -5.7 -5.1166 | overlap 688541 CTTCTTTAACTTCAT CTTTAAA ACGT TTTAAAG TTTTTAGTTTTCCTG TERM 401 690406 - 690424 + g 81 -3.9 -5.64873 | overlap 690413 GCATTCCTACTAACA GAGACTT GGCAA AAGTTTC TTTTTTCTTGTTAGG TERM 402 690544 - 690554 + g 72 -4 -5.15969 | overlap 690538 CTGCTTTATCAGTTG TGAA TTG TTCA TTTTTTGAGTTAACA nusA 692640 - 691129 - | transcription elongation factor NusA TERM 403 691628 - 691650 + g 73 -9.2 -2.62003 | overlap 691627 TCGATATTCCAACCG GTTAGCTTAG AAG CTAAGCGAAC ATTCTGCCCTCTTCT RT0541 693300 - 692815 - | hypothetical protein TERM 404 693339 - 693323 - R 82 -5.8 -5.55769 | opp_overlap 693323 693316 GTTTATAATAAAAAA GGTGGA ATAAA CCCACC CTATTTATAATTTAT TERM 405 693867 - 693857 - R 73 -6.8 -4.2717 | ACTATCTCACGAAAA TGCC GTT GGCA TAAGTGCTTTTATAG RT0542 694113 - 694039 - | hypothetical protein tlyA 695430 - 694675 - | hemolysin tyrS 696818 - 695583 - | tyrosyl-tRNA synthetase TERM 406 699813 - 699797 - g 72 -8.1 -3.29995 | opp_overlap 699796 699797, overlap 699796 TCAAACGTATAAAAT TACTATC AAA GATAGTA TATTCCCTAATTTTA TERM 407 699797 - 699813 + G 70 -8.1 -3.15124 | opp_overlap 699797 699796, overlap 699796 TCAAACGTATAAAAT TACTATC AAA GATAGTA TATTCCCTAATTTTA TERM 408 700227 - 700211 - g 74 -6.7 -4.22883 | opp_overlap 700218, overlap 700218 700220 GATGATGCAAAATAA TATAAGA TAT TCTTATA AAGAAAATGTATTAA TERM 409 701626 - 701642 + G 77 -8.1 -3.84185 | opp_overlap 701625 ATGATTCTTTAACAG GCTTATA TAA TATAAGC TTATATTTAGGTGAG RT0546 699459 - 705140 + | hypothetical protein TERM 410 705543 - 705561 + T 71 -5.4 -4.57209 | GGTTTATAATGTCCT TTTGTTTT ACA AAAACGAA TTTTATAATTAATAT TERM 411 705664 - 705695 + T 91 -10.4 -3.77607 | opp_overlap 705664 705677 TAACTAATTGTAAAA CTTTACTAGAAAAT TTAC ATTTTCTTGTAAAG TTTAGTGAAATTATT TERM 412 705695 - 705664 - T 95 -10.4 -4.21768 | opp_overlap 705664, overlap 705677 TAACTAATTGTAAAA CTTTACTAGAAAAT TTAC ATTTTCTTGTAAAG TTTAGTGAAATTATT fadB 708017 - 705855 - | 3-hydroxyacyl-CoA dehydrogenase TERM 413 709491 - 709460 - R 100 -16.2 -3.9712 | opp_overlap 709467 709486, overlap 709484 CTATTTGAGCAGAAA CGACTAACTATAAT GACA ATTATAGTTAGTCG TGCAACAACTATCAT RT0548 710657 - 709503 - | 2-octaprenyl-6-methoxyphenyl hydroxylase RT0549 710895 - 710632 - | putative monovalent cation/H+ antiporter subunit F ntrX 711324 - 712751 + | nitrogen assimilation regulatory protein NtrX RT0551 712732 - 714501 + | hypothetical protein RT0552 715617 - 714652 - | hypothetical protein ftsI1 717650 - 715866 - | cell division protein FtsI/ penicillin-binding protein TERM 414 716991 - 717002 + g 75 -4.4 -5.24129 | CTGTTTACCATAAGC GTTG ACTT CAAC TTTTTTATAACCGAA RT0554 718161 - 717640 - | hypothetical protein ftsI2 720358 - 718673 - | cell division protein FtsI/ penicillin-binding protein RT0556 720869 - 720483 - | hypothetical protein mraW 721981 - 721061 - | S-adenosyl-methyltransferase MraW mraZ 722430 - 721981 - | cell division protein MraZ TERM 415 722804 - 722790 - H 100 -10 -4.85782 | TCCCTCAAAAACAAA CGCCTA AAC TAGGCG ATGAAAAGATAAAAT TERM 416 723517 - 723503 - g 74 -7.2 -4.01089 | opp_overlap 723503 ATCACAACATAATAA GCTATT ACT AATAGC TACTATATTTACAAG TERM 417 723536 - 723561 + G 72 -8.3 -3.29263 | overlap 723543 TATATTTACAAGTTC TGTCGGAGGTG CTAC CACCTTTGGCA TTATGGAAAAAGTGT RT0559 723366 - 724751 + | sodium coupled symporter TERM 418 724909 - 724924 + T 79 -4.8 -5.47218 | opp_overlap 724909 TGGTCAAGTTTAAAA TACTAA ATTA TTAGTA TTTTTTTAAATAAGA uvrC 726874 - 724994 - | excinuclease ABC subunit C TERM 419 725383 - 725370 - G 83 -6.7 -5.07523 | GACATACAAACAAAA GGGAT ATTC ATCCC AAATTTATCCATTAC TERM 420 726822 - 726805 - G 83 -9.9 -3.56092 | opp_overlap 726803 CTAGCATTTTGTAAA CTCCTGA ACAT TCAGGAG CATCTATAATTTTAG RT0561 727507 - 726980 - | hypothetical protein TERM 421 728495 - 728519 + r 81 -8.9 -3.99678 | overlap 728514 GCATGTTCTTACCAT TATTAAAATTT CAT AAATTTTAATA TTTAATTATACGGCT RT0563 728994 - 728779 - | hypothetical protein TERM 422 729255 - 729237 - R 71 -5.3 -4.66264 | GAAAATTTTTAAAAA CTGCACA ATTGA TGTACAG AACTGCCTATAACAA secA 732593 - 729876 - | preprotein translocase subunit SecA TERM 423 731807 - 731821 + g 73 -3.6 -5.1971 | TTGTAATACCTACTT CTGTTA AGT TAATAG TTTTTAGTTTTTCAT prsA 732792 - 733652 + | protein export protein PrsA precursor acpS 734192 - 733806 - | 4'-phosphopantetheinyl transferase rpoZ 734576 - 734193 - | DNA-directed RNA polymerase subunit omega murA 735992 - 734733 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase gyrB 738524 - 736101 - | DNA gyrase subunit B RT0570 738635 - 739495 + | hypothetical protein TERM 424 740130 - 740161 + G 70 -3.8 -5.11613 | gap 1, opp_overlap 740130, overlap 740114 740131 740132 GCTGCTGCAAGTAGA CTTGCTAAG-CTGCA TTA TGCAGATTTAGCAGA TTTTTTAGATAATCT TERM 425 740132 - 740159 + G 71 -8.6 -2.78807 | gap 1, opp_overlap 740130, overlap 740114 740131 740130 TGCTGCAAGTAGACT TGCTAAG-CTGCA TTA TGCAGATTTAGCA GATTTTTTAGATAAT mgtE 740010 - 741380 + | magnesium transporter TERM 426 742409 - 742427 + F 70 -7.6 -3.31931 | GTAATTTACAGAGTG TTTAACTA GAT TAGTTAAA TTAATACTTATGTAA TERM 427 742987 - 742972 - f 88 -4.8 -5.88061 | opp_overlap 742974 742982 742984, overlap 742979 742982 AAAAAATCAAAAAAA TAGAAA ATAA TTTCTA GTATAGATATTAGAA TERM 428 742999 - 742979 - f 70 -4.1 -5.11475 | opp_overlap 742974 742982 742984, overlap 742972 742982 742995 CAAAAAAATAGAAAA TAATTTCTA GTA TAGATATTA GAAATAAATTCATAA TERM 429 743036 - 743008 - f 83 -7.7 -4.60949 | opp_overlap 743017, overlap 743004 GATATTAGAAATAAA TTCATAAAATTTA TAA TAAATATTATGAA CCATCTAAAGCTAAT TERM 430 743111 - 743094 - f 73 -7.1 -4.1899 | overlap 743107 TGAGCTTATTTAAAA GCAAATT ACCT AATTTGC AGTACAAAGTTTTGC yajC 743745 - 744173 + | preprotein translocase subunit YajC TERM 431 744930 - 744944 + G 75 -4.2 -5.27335 | opp_overlap 744931, overlap 744931 TTTTGATCAAAACTC ACAACC AAT GGTTGC TTTTTCTTTCAACAA TERM 432 744931 - 744943 + G 74 -7.7 -3.75678 | opp_overlap 744931, overlap 744930 TTTGATCAAAACTCA CAACC AAT GGTTG CTTTTTCTTTCAACA TERM 433 745065 - 745044 - g 70 -8.7 -2.61869 | opp_overlap 745044 745043 745040, overlap 745043 CAATAAATTACTAAG CGCTCCAAT GATA AATGGAGCG ATTATTGGTGGGGAT TERM 434 745044 - 745065 + G 71 -8.7 -2.83073 | opp_overlap 745043 745044, overlap 745043 745040 CAATAAATTACTAAG CGCTCCAAT GATA AATGGAGCG ATTATTGGTGGGGAT secD 744157 - 745713 + | preprotein translocase subunit SecD RT0576 745873 - 746469 + | Sco2-like protein ccmE 746571 - 746957 + | cytochrome c-type biogenesis protein CcmE TERM 435 747503 - 747470 - g 70 -5.5 -4.20084 | gap 1, opp_overlap 747470 747477 ATGATTTATGTAAAA TGCT-AAAGAAACGTA TTG TGCATTTCTTTGAGCA TTATAAAGATTTAGA ppa 747085 - 747621 + | inorganic pyrophosphatase TERM 436 748572 - 748560 - g 70 -6.3 -4.18644 | AGTATATAAATCAAA CGATA TAG TATCG GCACAAAAAATACAA TERM 437 748857 - 748877 + G 72 -7.7 -3.56643 | opp_overlap 748857 748856, overlap 748860 AATGAATACTAATAT GAATCTATT ATT AATGGATTC TTTGAAACATATAGG RT0579 747676 - 749199 + | MviN-like protein TERM 438 749647 - 749663 + G 85 -5.9 -5.42975 | opp_overlap 749647 GACGAATCTAAAACT TTGCTGT TGT ATAGCAA TTTTTATTTCTATAG RT0580 749180 - 749926 + | hypothetical protein RT0581 750001 - 750615 + | hypothetical protein recG 753008 - 750897 - | ATP-dependent DNA helicase RecG TERM 439 752228 - 752246 + g 72 -4.6 -4.93454 | overlap 752226 752231 GAATAGATGTAGCTT TAGGGTAA ATA TTACCTTG TTTTCTATTTATTTG TERM 440 752231 - 752243 + g 74 -6.3 -4.50487 | overlap 752226 752228 TAGATGTAGCTTTAG GGTAA ATA TTACC TTGTTTTCTATTTAT mraY 755256 - 754171 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 756770 - 755424 - | D-alanine ligase. murE 758337 - 756841 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 441 757460 - 757439 - G 70 -5.9 -4.258 | opp_overlap 757427 757439 GCAGCGATTAATAAA TTGCTAGCT TGAA AGCTACCAA TAATTAAGGTATGTA mfd 761801 - 758439 - | transcription-repair coupling factor TERM 442 759901 - 759884 - G 81 -7.1 -4.57353 | GTTGACTACATAAAA TAGTTGT CGGG ACAACTA CAGCTACTTGTGGTA RT0587 762075 - 761803 - | hypothetical protein TERM 443 762451 - 762433 - g 71 -4.6 -4.80487 | GATAATGAAAATAAA GTAATCTT TCT AAGATTGC AATTGAATAAAAATT RT0588 762298 - 762567 + | hypothetical protein TERM 444 763431 - 763447 + G 70 -5.9 -4.35885 | opp_overlap 763431 TACATTGATTGATAA TAACCGT CAA ATGGTTA TTTCTTGTGATAGGT dnaA 762664 - 764055 + | chromosomal replication initiation protein TERM 445 765154 - 765164 + F 86 -5.4 -5.8096 | opp_overlap 765154 765152 GCTTATATATCAATA GCTT GTA AAGC TTTTTATTTTTTATA RT0590 766134 - 767630 + | patatin-like protein TERM 446 767743 - 767759 + T 75 -6.7 -4.45261 | opp_overlap 767743, overlap 767738 767736 CAATCTAGTTAAAAA TACTAAT AAT ATTAGTA TTTTAGGTTTCTTTC TERM 447 767759 - 767743 - T 77 -6.7 -4.68424 | opp_overlap 767743 767738 767736 CAATCTAGTTAAAAA TACTAAT AAT ATTAGTA TTTTAGGTTTCTTTC bcr1 769072 - 767843 - | bicyclomycin resistance protein TERM 448 767988 - 767946 - G 74 -2.2 -5.50774 | overlap 767949 CATAATAAAGAAAAA TTACTTATTGTTTCTCCA TGTATTT TAGAAACACAATAAGTTA CAGCAGCAATGACTA RT0592 770993 - 769896 - | translation-associated GTPase TERM 449 770163 - 770145 - G 71 -3.2 -5.22312 | opp_overlap 770145 770146, overlap 770146 ACCTATAGTAAAAAA GCTTTTAA GAT TTAAAAGA TTATAACCTTCTTTA TERM 450 770851 - 770824 - G 83 -10 -3.64703 | gap 1 TTGCTTCCAGCTAAA CTGACGAGTCGTT GTA AACG-CTCATCAG GTACTAAAACTTTGC TERM 451 770973 - 770943 - G 79 -8.4 -4.02571 | opp_overlap 770944, overlap 770944 TAATGCATTAAACAA CGTTGACTTACCAA CAT TTGGTAACCCAACA ATTCCGAGTTTTAAT TERM 452 770972 - 770944 - G 77 -9.7 -3.0082 | opp_overlap 770944, overlap 770943 AATGCATTAAACAAC GTTGACTTACCAA CAT TTGGTAACCCAAC AATTCCGAGTTTTAA pth 772069 - 771512 - | peptidyl-tRNA hydrolase rplY 772904 - 772293 - | 50S ribosomal protein L25/general stress protein Ctc RT0595 773834 - 773139 - | hypothetical protein rpmI 773991 - 774197 + | 50S ribosomal protein L35 rplT 774213 - 774566 + | 50S ribosomal protein L20 rpmH 774692 - 774826 + | 50S ribosomal protein L34 rnpA 774846 - 775202 + | ribonuclease P RT0600 777202 - 775364 - | hypothetical protein TERM 453 776608 - 776595 - G 71 -2.4 -5.36441 | opp_overlap 776595 TCTTTATATAAAAAA GAAG GTAACT CTTC TATGCTTTTCATGTT TERM 454 777240 - 777222 - R 75 -9 -3.23174 | opp_overlap 777222, overlap 777221 ACATCCTTATAAAAT TTACCATA TTA TATGGTAA TTATTGAAAATGTCA TERM 455 777222 - 777240 + r 79 -9 -3.64487 | opp_overlap 777222 777221 ACATCCTTATAAAAT TTACCATA TTA TATGGTAA TTATTGAAAATGTCA TERM 456 778022 - 777987 - R 75 -3.6 -5.45802 | gap 1 TGTGCAAAAGAAAAA TATGATCTCTAATAAAA AAA TTTTATT-GCAATCATA ACTCCTAAAGTATCT RT0601 778974 - 778825 - | hypothetical protein TERM 457 779684 - 779703 + r 75 -9.2 -2.65808 | opp_overlap 779680 779684, overlap 779681 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 458 779703 - 779684 - R 82 -11.4 -2.5602 | opp_overlap 779684 779681, overlap 779680 TAAGGAGGTAATCCA GCCGCAGG TTCC CCTACGGC TACCTTGTTACGACT TERM 459 781141 - 781178 + r 83 -6.6 -5.10163 | gap 2, overlap 781144 781147 781165 781172 CCGATAGCGTTCGTT CTGAGCCAGGATCAAACT CTCA AGTTTGATTCTG--TCAG TTTTATTTTAAAATT TERM 460 781144 - 781177 + r 72 -7.5 -3.64471 | overlap 781141 781147 781165 781172 ATAGCGTTCGTTCTG AGCCAGGATCAAACT CTCA AGTTTGATTCTGTCA GTTTTATTTTAAAAT TERM 461 781147 - 781174 + r 89 -12.2 -2.92168 | overlap 781144 781141 781165 781172 GCGTTCGTTCTGAGC CAGGATCAAACT CTCA AGTTTGATTCTG TCAGTTTTATTTTAA TERM 462 782091 - 782103 + r 74 -4.9 -5.1523 | opp_overlap 782091, overlap 782082 CTTTATGACTGAAAA GTAAA TAT TTTAC TTTTTGTCTTATCAA TERM 463 782659 - 782671 + r 70 -6.3 -4.20084 | opp_overlap 782658 AGCCTTACATATCAT TGCAT TGA ATGCA TTTTAAATAAATCCT ntrY 784827 - 783022 - | nitrogen regulation protein NtrY TERM 464 784671 - 784653 - G 81 -2.5 -5.79588 | CTAAAATCAAAAAAA TTGCTAA ATCAA TTAACAA AAATCCAATAATCGT rpsU 785249 - 785049 - | 30S ribosomal protein S21 RT0605 785330 - 785941 + | hypothetical protein TERM 465 786176 - 786163 - f 72 -3.8 -5.29846 | opp_overlap 786163 AATTTTAAACAAAAA CGAG TTGTAT CTCG CTTTATTATTTTTTA TERM 466 789062 - 789042 - g 74 -6.1 -4.48072 | ACATGTAGTACAAAA TCCAATGTC TGG GACACAGGA TTACAACACGTCAGT ileS 786574 - 789834 + | isoleucyl-tRNA synthetase RT0607 790366 - 790560 + | hypothetical protein pccA 792776 - 790779 - | PCCase. TERM 467 791374 - 791363 - G 78 -4.4 -5.4433 | ATATATAAATAAAAA TAGC AGTT GCTA GAAATACTGTAGTTA TERM 468 791900 - 791916 + g 70 -3.8 -5.16841 | GCAACCTAGTATTCA TTTCTA AAAAA TAGAAA TTTTTATTGCTGTCG pccB 794418 - 792874 - | PCCase. RT0610 794494 - 794634 + | hypothetical protein TERM 469 795433 - 795387 - g 76 -9.1 -3.10589 | gap 1, opp_overlap 795396 795405, overlap 795378 795396 795405 TAAAAATTCTTAAGA TTTATGAAATCGGTATAATTGC CTTT GCAATT-TACGGATTTCATAAT AATAATCTATTAATC aas 795116 - 798574 + | acylglycerophosphoethanolamine acyltransferase znuB 799686 - 798925 - | zinc/manganese ABC transporter permease protein TERM 470 799818 - 799800 - g 80 -2.4 -5.73672 | opp_overlap 799802, overlap 799802 AAAGAATTAAAAAAA TTTGAGAA AAT CTCTCATA ATTGGTGGAATAAGG TERM 471 799860 - 799842 - g 73 -8.2 -3.4071 | AATAAGGATGGAGAA TTCGGTAT ATT ACACCGAA TAAACCATATTCGCA ubiG 799767 - 800507 + | 3-demethylubiquinone-9 3-methyltransferase TERM 472 800999 - 800964 - g 74 -7.8 -3.82378 | opp_overlap 800973, overlap 800973 AGGCAGCGACAACAA GCTTTAAAAGATAAAA AACA TTTTATCTTTAATAGC GAATGGCGTGATAAA gltX 800628 - 802037 + | glutamyl-tRNA synthetase TERM 473 803546 - 803534 - f 73 -7.7 -3.77219 | ATGACGTAATTCAAA CACTG TTG CAGTG TGAATATTTTCGTTC spoTb 804351 - 805103 + | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTb spoTc 805450 - 805109 - | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTc TERM 474 806258 - 806216 - R 72 -8.6 -3.17194 | opp_overlap 806222, overlap 806222 ACTTTTGGAACCTAA TACAAATGGATACCGTGACT TAT AGAGATGGTATCCATTTATA CTAGGCCCTCAGTCC TERM 475 806222 - 806252 + r 75 -7.6 -3.96327 | opp_overlap 806216 806222 GGAACCTAATACAAA TGGATACCGTGACT TAT AGAGATGGTATCCA TTTATACTAGGCCCT TERM 476 806334 - 806295 - R 73 -5.8 -4.8543 | CAATTCTTACAAAAA GTAATACAACAAGACTAG TTTA CTAGACCTATTGCATAAC CTATCTTGAGTAGAT groEL 808008 - 806356 - | chaperonin GroEL TERM 477 807513 - 807524 + g 72 -4.4 -5.03747 | TACCGACTTCCTCCA TTGC CTTA GCAA TTTTTTCACCGATTT groES 808316 - 808029 - | co-chaperonin GroES TERM 478 809105 - 809143 + r 91 -10.6 -3.59233 | opp_overlap 809119, overlap 809101 809106 AAGGTTTATGTTTAT CATTCATCATTATATTCT ACT AGAATATAATGATGAACA TTGGTTTAGTACTTG TERM 479 809106 - 809142 + r 100 -14.1 -2.74817 | opp_overlap 809119, overlap 809105 809101 AGGTTTATGTTTATC ATTCATCATTATATTCT ACT AGAATATAATGATGAAC ATTGGTTTAGTACTT rph 810571 - 810065 - | ribonuclease PH grpE 810786 - 811322 + | HSP-70 cofactor RT0621 811469 - 812524 + | permease RT0622 812539 - 813204 + | hypothetical protein RT0623 814159 - 813926 - | hypothetical protein rpsT 814925 - 814653 - | 30S ribosomal protein S20 rplQ 815358 - 814945 - | 50S ribosomal protein L17 rpoA 816393 - 815371 - | DNA-directed RNA polymerase subunit alpha TERM 480 816197 - 816178 - G 72 -5 -4.84914 | opp_overlap 816178 816176 AGGTATAGAAGAAAA TTCGTGCT CTAT AGCAGGAA TCTTTATAGAAGTAA rpsK 816795 - 816412 - | 30S ribosomal protein S11 rpsM 817198 - 816821 - | 30S ribosomal protein S13 adk 817897 - 817256 - | adenylate kinase secY 819214 - 817913 - | preprotein translocase subunit SecY TERM 481 819014 - 819004 - G 70 -4 -4.98531 | overlap 819008 819010 TTGCTAAAGCAAAAA TAGA CAT TCTA CCTAGCGACCCACCA rplO 819671 - 819219 - | 50S ribosomal protein L15 rpmD 819876 - 819685 - | 50S ribosomal protein L30 rpsE 820441 - 819914 - | 30S ribosomal protein S5 TERM 482 820191 - 820230 + g 81 -9.6 -3.45031 | gap 1, opp_overlap 820191 820200, overlap 820200 TTACCAACAACATCA TGATGAATAGTCCTATTTT GAT ATAATGGGACT-TTCATCA TTCGCTTTTTAGCAG TERM 483 820475 - 820495 + r 72 -8.3 -3.27674 | overlap 820474 AAAATGTTATTTTCT CTCTAGCTG CAT CAGCTAAAG CTTTTATAATACCGT rplR 820814 - 820458 - | 50S ribosomal protein L18 rplF 821363 - 820830 - | 50S ribosomal protein L6 rpsH 821770 - 821372 - | 30S ribosomal protein S8 rpsN 822094 - 821789 - | 30S ribosomal protein S14 rplE 822651 - 822112 - | 50S ribosomal protein L5 rplX 822979 - 822638 - | 50S ribosomal protein L24 rplN 823344 - 822976 - | 50S ribosomal protein L14 rpsQ 823653 - 823405 - | 30S ribosomal protein S17 rpmC 823855 - 823640 - | 50S ribosomal protein L29 rplP 824258 - 823848 - | 50S ribosomal protein L16 rpsC 824926 - 824273 - | 30S ribosomal protein S3 TERM 484 824552 - 824582 + g 70 -8.4 -3.14203 | overlap 824551 TCTTTTTTCAAGCTG CGCTGCTATAGT TTGAGCT ACTATAGCAGCA TCTATATTAAATTTT rplV 825287 - 824928 - | 50S ribosomal protein L22 TERM 485 825252 - 825267 + g 90 -6.2 -5.52079 | TCTAATAGACTTAGC TTTTGC TGTA GCAAAA TTTTTATTTTCCTGT rpsS 825574 - 825296 - | 30S ribosomal protein S19 rplB 826420 - 825599 - | 50S ribosomal protein L2 rplW 826717 - 826421 - | 50S ribosomal protein L23 rplD 827337 - 826714 - | 50S ribosomal protein L4 TERM 486 826930 - 826889 - G 90 -4.7 -5.71983 | gap 1, opp_overlap 826889 826903, overlap 826890 TCAATTATAAAAAAA CTCTGACCTTG-AAATTTAT TTA ATAAATTTACAAGAACAGAC GTTTTAGGCTTCTCT TERM 487 826929 - 826890 - G 79 -8.2 -4.01563 | gap 1, opp_overlap 826889 826903, overlap 826889 CAATTATAAAAAAAC TCTGACCTTG-AAATTTAT TTA ATAAATTTACAAGAACAGA CGTTTTAGGCTTCTC TERM 488 827132 - 827148 + g 91 -5.2 -5.88565 | CGTGCATTGCCTGTA CCTTTT TGCTT AAAAGG TTTTTTTGTTGTGCC TERM 489 827355 - 827372 + r 70 -7.1 -3.65782 | TTATTTAACCTTATG CAGTTTT ATAC AAAACTG TTATATCATTTAATA rplC 828224 - 827577 - | 50S ribosomal protein L3 rpsJ 828542 - 828225 - | 30S ribosomal protein S10 TERM 490 828628 - 828591 - R 100 -16.1 -4.39166 | opp_overlap 828597 828623, overlap 828597 TTTTAGATAGTAAAA TATAAATACCTATTATT TTTA AATAATAGGTATTTATA AAATAAATTAATTAT TERM 491 828622 - 828597 - R 100 -10.7 -4.49352 | opp_overlap 828597, overlap 828591 ATAGTAAAATATAAA TACCTATTATT TTTA AATAATAGGTA TTTATAAAATAAATT TERM 492 828597 - 828622 + r 95 -10.7 -3.9009 | opp_overlap 828591 828597 ATAGTAAAATATAAA TACCTATTATT TTTA AATAATAGGTA TTTATAAAATAAATT tuf 829820 - 828636 - | elongation factor Tu TERM 493 829433 - 829448 + g 77 -7.6 -4.12456 | opp_overlap 829422, overlap 829432 AAAATACTACCATAG CAGGTA CACC TACCTG TTTTGCCAGTAATAT TERM 494 830681 - 830693 + G 77 -5.5 -4.99035 | TTGGAGCAATTATTC GCAGT GCA GCTGC TTTTTATATAAATGC RT0656 830323 - 831069 + | tRNA/rRNA methyltransferase TERM 495 831719 - 831709 - g 82 -5.4 -5.44119 | GCTATTTTAAAAAAA TGTG CTG CACA GGTGAATTATGAATT TERM 496 832318 - 832297 - g 70 -5.1 -4.58685 | AAATTTGCTGAAAAA GTTGCAGAG TTTA CTCAACAAC CATTTAAGACTGCTC fumC 831550 - 832935 + | fumarate hydratase ftsZ 833288 - 834646 + | cell division protein FtsZ TERM 497 834895 - 834871 - T 70 -5.9 -4.32402 | opp_overlap 834889 TTTCAATCAAAACAA TGTACTAAA TGCAAGT TTTAGTACA CACTATCTTATTTAA RT0659 835875 - 835303 - | hypothetical protein TERM 498 835362 - 835376 + g 71 -8.6 -2.77166 | overlap 835361 GTATAAAATGTCTAA GCATTG ATT CAATGC CGTTTTTTAAGGTAA ampG2 837141 - 835915 - | murein peptide permease protein AmpG rhlE 838445 - 837222 - | ATP-dependent RNA helicase RhlE TERM 499 837762 - 837779 + g 72 -2.8 -5.47159 | TCTATTCCCAAGTTG TTTAGT TAATTC ACTAAA TTTTTCTTTATTAGA TERM 500 838879 - 838894 + r 70 -4 -5.12068 | gap 1, opp_overlap 838879 838881 CTCTGAGATTAATAG CATAGGC TTT GCCT-TG TTTTTCTTCAATGTC cspA 839068 - 838856 - | cold shock protein CspA TERM 501 839202 - 839186 - H 72 -8.1 -3.12395 | opp_overlap 839186, overlap 839185 TTCATTATGCAAAAC TACCTTA CCT TAAGGTA TTTGTCAATAAACAT TERM 502 839186 - 839202 + H 78 -8.1 -3.92075 | opp_overlap 839186 839185 TTCATTATGCAAAAC TACCTTA CCT TAAGGTA TTTGTCAATAAACAT TERM 503 840148 - 840170 + H 71 -7 -3.86202 | opp_overlap 840149, overlap 840149 ATTCAGTGTCTACAA AGCTTCCTTA TTT TAAGGAGGCG TTTGCTATGATAAAA TERM 504 840149 - 840169 + H 82 -10.5 -2.914 | opp_overlap 840149, overlap 840148 TTCAGTGTCTACAAA GCTTCCTTA TTT TAAGGAGGC GTTTGCTATGATAAA TERM 505 840169 - 840149 - H 78 -8.3 -3.86897 | opp_overlap 840149 840148 TTCAGTGTCTACAAA GCTTCCTTA TTT TAAGGAGGC GTTTGCTATGATAAA RT0664 841537 - 841782 + | hypothetical protein RT0665 842115 - 842354 + | hypothetical protein ksgA 843322 - 842516 - | dimethyladenosine transferase RT0667 844319 - 843432 - | hypothetical protein ostA 846655 - 844520 - | organic solvent tolerance protein OstA TERM 506 847318 - 847344 + G 76 -9.6 -2.66963 | overlap 847317 847315 AAATAGGCGTTATCA CTTCAATAACAG GCG CTGTTATTAAAG ATATTATTCATCGTA TERM 507 847439 - 847418 - g 72 -6.7 -4.19238 | gap 1 CGTGCAAGGCGAAAA TTCTAGCCAT GAA ATGGCT-GAA GCGATTGAAGGATTT xseA 846873 - 848234 + | exodeoxyribonuclease VII large subunit RT0670 848273 - 848619 + | hypothetical protein TERM 508 849087 - 849067 - f 80 -3.4 -5.82172 | overlap 849085 ACGAATATAAAAAAA TTATTAAG ACATA CCTAATAA TATTCTATTATCTAA xthA2 849816 - 850628 + | exonuclease III RT0672 850822 - 851025 + | hypothetical protein TERM 509 851330 - 851342 + G 77 -7.7 -4.16016 | opp_overlap 851330 ATTACCTGATGATAA GCTAC TTA GTAGC TTTGTTCGCAAATAC TERM 510 851342 - 851330 - g 71 -7.7 -3.4178 | opp_overlap 851330 ATTACCTGATGATAA GCTAC TTA GTAGC TTTGTTCGCAAATAC engA 851028 - 852371 + | GTP-binding protein EngA RT0674 854501 - 853050 - | ubiquinone biosynthesis protein ubiE 855244 - 854498 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 511 855419 - 855433 + r 70 -4.3 -5.05782 | opp_overlap 855419 855412 TAATATCATAAAGAA GCTTA CACAT TAAGC TTTTTTAGCATAGAT TERM 512 855492 - 855528 + r 73 -3.2 -5.55001 | gap 1, overlap 855494 TTGAGGTGTTAAAAC TGTGATACTATGC-TGT TAAG ACATGTATAGTAACATA TTTTGTTTTTTATTG RT0676 856854 - 855586 - | hypothetical protein TERM 513 856756 - 856766 + g 70 -4 -4.88067 | opp_overlap 856756 CTCATGTTCATATAA TTCT TTT AGAA TTTTTATACCTAAAT RT0677 858252 - 857371 - | hypothetical protein TERM 514 858149 - 858164 + g 76 -6.2 -4.60746 | opp_overlap 858149 858147 TCAGTATCAAAAAGA CAACTA GCAT TAGTTG TTTTAATATTTTTAC metG 859898 - 858375 - | methionyl-tRNA synthetase tdk 860506 - 859895 - | thymidylate kinase TERM 515 859984 - 860007 + g 78 -3.2 -5.61596 | opp_overlap 859988 859997 860001 860004, overlap 859988 860001 860004 CAGGAAATCTATGAC TTAATTCTTG AAAG CAAGAATAGA TTTTTTTATAAAAAT TERM 516 860031 - 859997 - G 83 -9.7 -3.5774 | gap 1, opp_overlap 859988 859984 860001 860004, overlap 859988 860001 860004 ACTTAATTCTTGAAA GCAAGAATAGATTTTT TTAT AAAAATCTATTCTT-C TTCTATCAAATTTAT TERM 517 860001 - 860028 + g 100 -11.6 -3.89348 | opp_overlap 859988 859997 860001 860004, overlap 859988 859984 860004 AATTCTTGAAAGCAA GAATAGATTTTT TTAT AAAAATCTATTC TTCTTCTATCAAATT TERM 518 860028 - 860001 - G 93 -11.6 -3.51976 | opp_overlap 859988 859984 860001 860004, overlap 859988 859997 860004 AATTCTTGAAAGCAA GAATAGATTTTT TTAT AAAAATCTATTC TTCTTCTATCAAATT TERM 519 860025 - 860004 - G 74 -7.5 -3.89354 | opp_overlap 859984 860001 860004, overlap 860001 859997 TCTTGAAAGCAAGAA TAGATTTTT TTAT AAAAATCTA TTCTTCTTCTATCAA TERM 520 860004 - 860025 + g 75 -7.5 -4.06864 | opp_overlap 860004 860001 859997, overlap 859984 860001 TCTTGAAAGCAAGAA TAGATTTTT TTAT AAAAATCTA TTCTTCTTCTATCAA proP4 861069 - 862388 + | proline/betaine transporter ProP4 ubiA 863289 - 862441 - | prenyltransferase TERM 521 863248 - 863215 - G 72 -5.3 -4.72386 | gap 1, opp_overlap 863216, overlap 863217 863220 TAAAGCAGGGAAAAA GACTAGCAAATAAGCC ACC GGCTTATCTGCACG-C ATTAATTTAAAGATA TERM 522 863247 - 863217 - G 82 -9 -3.96486 | opp_overlap 863216, overlap 863215 863220 AAGCAGGGAAAAAGA CTAGCAAATAAGCC ACC GGCTTATCTGCACG CATTAATTTAAAGAT TERM 523 863244 - 863220 - G 100 -13.7 -3.02902 | opp_overlap 863216, overlap 863217 863215 CAGGGAAAAAGACTA GCAAATAAGCC ACC GGCTTATCTGC ACGCATTAATTTAAA TERM 524 864012 - 863996 - H 75 -6.7 -4.43832 | CAATATATAAAATAA GTAATTT TTA AAATTAC AGTGACCTGATGTAC valS 864120 - 866564 + | valyl-tRNA synthetase TERM 525 866616 - 866602 - gf 76 -8.6 -3.5275 | overlap 866598 AAAGGATATAAGGAA TGCAGA ACG TCTGCA TACAAAAACGTATTT RT0683 866527 - 867456 + | hypothetical protein TERM 526 868143 - 868153 + G 75 -4 -5.1963 | TGTCAAGCTAAGACC TGAT GCA ATCA TTTTTCTTCCTTCAG TERM 527 868437 - 868455 + G 80 -9.6 -3.22068 | GGGATGTAATATTTT TCCTGTAG GTC CTGCAGGA TTGATGAATATGTTA rmuC 867523 - 868794 + | DNA recombination protein RmuC TERM 528 868889 - 868870 - f 86 -9.4 -4.18465 | opp_overlap 868869 868868 868872 TCCTAAAAAAGACAA TACACATG TTAT CATGTGTA AGTTTAATTAAGCTA RT0685 868875 - 868988 + | hypothetical protein TERM 529 869100 - 869086 - T 70 -3.6 -5.15634 | overlap 869087 CACTGTATGAAAAAA CTATGT GCT ACATAA CAAGAAATCTAATAA RT0686 871806 - 869848 - | hypothetical protein TERM 530 870332 - 870320 - G 76 -2.7 -5.50723 | TTACGAAAATAAAAA CAGAT ATA ATCTA AAATAAGTGTTGCCA TERM 531 872414 - 872404 - R 86 -5.4 -5.63645 | opp_overlap 872404 872402 TTAAAATACAAAAAA TCAG AAT CTGA TCTCTATTTATGTTA clpX 874799 - 873522 - | ATP-dependent protease ATP-binding subunit TERM 532 874546 - 874562 + g 81 -8.1 -4.1891 | TTATAAACCGCTACT GCTAAAA TCT TTTTAGC TTTGTCTTGCCCAAC rimJ 875464 - 874913 - | ribosomal-protein-alanine N-acetyltransferase exsB 876144 - 875461 - | trans-regulatory protein ExsB TERM 533 877214 - 877226 + G 75 -4.9 -5.03747 | overlap 877197 877220 AATGTTAATCGGTGG CATTA CTT TAATG TTTTTTGAAAGCTTT msbA2 876768 - 878498 + | lipid A export ATP-binding/permease protein MsbA RT0692 878728 - 878976 + | hypothetical protein bcr2 879507 - 880682 + | bicyclomycin resistance protein RT0694 880785 - 882032 + | hypothetical protein TERM 534 882211 - 882185 - g 83 -11 -2.95223 | CAACTTTACTACATA TTGCAGGCTTAC TTG ATAAGCCTACAA ACGGTCAAGTCATAA RT0695 882025 - 882690 + | ABC transporter ATP-binding protein RT0696 882896 - 883846 + | hypothetical protein TERM 535 885274 - 885286 + G 71 -4.9 -4.69326 | opp_overlap 885274 CTCTTGATTACATTA CAAAA ATA TTTTG TTTTATATTCCGTAT RT0697 884838 - 886112 + | hypothetical protein TERM 536 887393 - 887420 + G 70 -4.4 -4.96657 | opp_overlap 887418, overlap 887368 887418 ATGATAAATCAATTA TTATTAATGAAG CATT TTTTATTAATAA TTTTATTATATTTGT ccmF 886105 - 888114 + | cytochrome c-type biogenesis protein CcmF TERM 537 888763 - 888784 + T 91 -7.3 -5.5112 | opp_overlap 888763 AGTAAATAGAAAAAA GCCCAGTTT AAAA AAAATGGGC TTTTTTCTTGATCAA TERM 538 888784 - 888763 - T 91 -7.3 -5.5762 | opp_overlap 888763 AGTAAATAGAAAAAA GCCCAGTTT AAAA AAAATGGGC TTTTTTCTTGATCAA ompB 893768 - 888831 - | rickettsial outer membrane protein B spoTd 894923 - 894348 - | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTd RT0701 896218 - 895274 - | beta-glucosidase RT0702 896703 - 896263 - | hypothetical protein TERM 539 896764 - 896778 + r 76 -8.6 -3.6692 | overlap 896762 ACATATTAAGTTTTT CGTTGT GTC ACAACG TGTTTTGACATCCAA ihfA 897210 - 896923 - | integration host factor alpha subunit TERM 540 897430 - 897448 + r 70 -7.5 -3.47475 | overlap 897428 CAACGCTTTGTGCTA CCTGATA GTAAG TATCAGG TCTTATTAAATTTAT TERM 541 898312 - 898287 - R 70 -4.7 -4.79683 | opp_overlap 898304 898306, overlap 898289 898304 AATTTACAAAATAAA GAGTAGAGCTA TTAA TAGCTGTACAC TACATCTCTTGTAGA lpxL 899233 - 898361 - | lipid A biosynthesis lauroyl acyltransferase TERM 542 899214 - 899224 + gr 72 -2.6 -5.40004 | ATTAAGTATCTAAGC TTTT TTA AAAA TTTTTTCATTTAATA lpxK 900173 - 899208 - | tetraacyldisaccharide 4'-kinase ligA 903544 - 901463 - | NAD-dependent DNA ligase LigA tgt 904773 - 903688 - | queuine tRNA-ribosyltransferase TERM 543 905553 - 905543 - H 74 -8.2 -3.31182 | overlap 905542 GCAATCAAAAAGAAT GCGC CAC GCGC TAAAATAGCATATGA RT0708 906635 - 906880 + | hypothetical protein TERM 544 907054 - 907044 - T 72 -4 -5.30199 | opp_overlap 907044, overlap 907020 AAAAATTAAGAAAAA TCAA TAA TTGA TTTAAGAGTGAACTT RT0709 907715 - 907272 - | hypothetical protein RT0710 908002 - 907724 - | hypothetical protein TERM 545 907815 - 907825 + g 70 -5.4 -4.66057 | opp_overlap 907815 GATTCACATAAATCA GCTA AAT TAGC TTTTCCTTTCTCTAT TERM 546 908105 - 908125 + r 72 -8.3 -3.25786 | opp_overlap 908105 TAAATAATAAAAAAA CCGAATCTA AAC TAGATGCGG TTACATTATAATGTC TERM 547 908125 - 908105 - R 100 -8.3 -6.01369 | opp_overlap 908105 TAAATAATAAAAAAA CCGAATCTA AAC TAGATGCGG TTACATTATAATGTC RT0711 908853 - 908404 - | hypothetical protein RT0712 909177 - 908875 - | hypothetical protein rnhA 909623 - 909165 - | ribonuclease H RT0714 910113 - 909634 - | hypothetical protein TERM 548 910033 - 910043 + g 72 -4 -5.11112 | ATCCCAATATAAATT TTCA TAC TGAA TTTTTGTTAGAATTT RT0716 910917 - 911741 + | hypothetical protein coaE 911735 - 912310 + | dephospho-CoA kinase TERM 549 912821 - 912833 + G 70 -6.3 -4.17023 | opp_overlap 912820 TGGCACTCACAGGAG GTAGA CAA TCTAC TTTTAAGATGATTGA dnaQ 912298 - 912987 + | DNA polymerase III subunit epsilon TERM 550 914758 - 914748 - g 78 -4 -5.44721 | opp_overlap 914735 ATTATTTTAAAAAAA TATG ATT CATA TAAAGAAGAAAATAA RT0719 913839 - 916310 + | ATP-dependent helicase/nuclease TERM 551 916779 - 916806 + F 95 -7.3 -5.83822 | opp_overlap 916778 GATGATGCAGAAATT TTTTTATCTAA AGAAAA TTAGATAAAAA TTTTTTTTGACTGTC TERM 552 918245 - 918231 - g 70 -3.6 -5.02323 | CCACTAGAAATAAAA CAAAAT TTA ATTCTG CAGATATGCGGACGA fabD 917493 - 918437 + | acyl-carrier-protein S-malonyltransferase TERM 553 919417 - 919431 + T 74 -8.6 -3.34233 | opp_overlap 919429, overlap 919402 919428 919429 AGTGGCCGAAGGCGA CGGTTT GCT AAACCG TTATACGGGTTATAC fadA 922604 - 921426 - | acetyl-CoA acetyltransferase RT0723 923620 - 922601 - | PHB polymerase domain-containing protein TERM 554 922788 - 922806 + g 82 -7.6 -4.43272 | opp_overlap 922792 TCAATTAAACTTGGA TCAATAAT AAA ATTATTGA TTTTCCATTTTAGAT TERM 555 923110 - 923097 - G 88 -3.1 -6.02914 | CTTATATAAAAAAAA TGAGA AAAA TCCCA TGGACAGGTAAGTAA TERM 556 923818 - 923793 - H 70 -4.8 -4.84017 | AATTCTTGACAAAAA GCTGAATATA TTATAT TAAATTCAGC ACCTTCAGAATGTAA TERM 557 924731 - 924719 - g 100 -3.4 -6.34616 | CTAAAATAAAAAAAA GTAG ATCAA CTAC ACAACGAATGGGATT TERM 558 925422 - 925400 - g 76 -5 -5.14163 | overlap 925404 ATGCAGTAAGAAAAA TATATTTTGA ATA TCAAAAAATA ACCTAAAATAACATC tlcE 923926 - 925428 + | ADP/ATP carrier protein 5 TERM 559 926256 - 926275 + T 79 -2.3 -6.07627 | ATCATTTTACTCATT TAAAAAT TCAAGC ATTTTTA TTTTTTTTTAACAAT tlyC 927294 - 926377 - | hemolysin C TERM 560 927287 - 927297 + g 86 -2.6 -6.01187 | TCTTTTTTTGAAGAT TTTA ACA TAAA TTTTTTTATTTAGTT RT0726 927814 - 927311 - | putative metalloprotease TERM 561 927831 - 927889 + r 100 -14.1 -2.94912 | gap 1, opp_overlap 927821 927819 927871 927873, overlap 927831 927869 ATATAGTTTTTCATA CCGCGACTCGATCGCGGTATTCAA AAAATAATTCAA ATG-ATACCGAGATCGAGTCGCGG TATGTCAATTAACAC TERM 562 927831 - 927847 + r 78 -9.4 -3.0263 | opp_overlap 927821 927819, overlap 927831 ATATAGTTTTTCATA CCGCGA CTCGA TCGCGG TATTCAAAAAATAAT lipA 928808 - 927915 - | lipoyl synthase glyA 930063 - 928801 - | serine hydroxymethyltransferase TERM 563 929355 - 929372 + g 82 -7.7 -4.49337 | ATAAGATTAAACCTC CCCTTGG CCCT CTAAGGG TTTTATGAGTTGTAG RT0729 930790 - 930143 - | esterase grxC2 931261 - 930926 - | glutaredoxin 3 TERM 564 931196 - 931214 + g 78 -3.2 -5.52096 | CTTAGTACCTTTCAT GAACAA TACTACT TTGTTC TTTTTTATTGCATTT nth 931314 - 931952 + | AP endonuclease class I. RT0732 933725 - 932883 - | hypothetical protein TERM 565 934250 - 934234 - g 81 -8.1 -4.24948 | opp_overlap 934233, overlap 934222 TTATTATAGTGAAAA CCATAAA GAT TTTATGG CATTATTACCTCAAG RT0733 933749 - 934864 + | hypothetical protein tatA 935114 - 934953 - | twin argininte translocase protein A pgpA 935196 - 935810 + | phosphatidylglycerophosphatase rplU 935977 - 936294 + | 50S ribosomal protein L21 rpmA 936319 - 936579 + | 50S ribosomal protein L27 lysC 936834 - 938180 + | aspartate kinase RT0739 938581 - 939039 + | hypothetical protein proP5 941285 - 940044 - | proline/betaine transporter ProP5 RT0741 941927 - 941610 - | hypothetical protein RT0742 942133 - 941930 - | hypothetical protein RT0743 942509 - 942147 - | hypothetical protein RT0744 947258 - 942513 - | hypothetical protein TERM 566 942681 - 942651 - G 76 -10 -2.67696 | opp_overlap 942647 942644 942651 942655, overlap 942647 942644 942655 ATTATTAACAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 567 942651 - 942681 + g 86 -10 -3.78633 | opp_overlap 942651 942647 942644 942655, overlap 942647 942644 942655 ATTATTAACAATCCA TAAATCTAAATCAA TAG TTGTTTTAGATTTA TTAATTATTTTTATT TERM 568 942655 - 942677 + g 74 -6.4 -4.43642 | opp_overlap 942655 942651 942647 942644, overlap 942651 942647 942644 TTAACAATCCATAAA TCTAAATCAA TAG TTGTTTTAGA TTTATTAATTATTTT TERM 569 944397 - 944411 + g 70 -5 -4.61231 | opp_overlap 944408 ATCTCCTATACCTAC GACAGT AAT ATTGTC TTTTTGGACATCTAA TERM 570 945833 - 945814 - G 71 -2.1 -5.49568 | AACTTAAAATAAAAA TCTTCAC TCCAAC GTGTAGA GATACGATCTAAATC TERM 571 947931 - 947921 - g 70 -4 -4.91459 | CAACACTCATAAAAA CATT GTA AATG AAATATCTAATTATC trmE 947340 - 948677 + | tRNA modification GTPase TrmE RT0746 948962 - 950224 + | hypothetical protein recA 951749 - 952771 + | recombinase A fabG 952773 - 953498 + | 3-ketoacyl-(acyl-carrier-protein) reductase acpP 953660 - 953905 + | acyl carrier protein TERM 572 954201 - 954186 - g 74 -6.2 -4.48333 | opp_overlap 954186 ATAGACTAAGTAAAA TGGATA AATT TATCCA TTATGGGATAGCAGC fabF 953939 - 955219 + | 3-oxoacyl-(acyl carrier protein) synthase II RT0751 955938 - 956084 + | hypothetical protein gmk 956716 - 956123 - | guanylate kinase TERM 573 956714 - 956724 + g 70 -4 -4.9448 | TTTATGTTTAAATTG CATA TTT TATG TTTTATTTCATAGAT RT0753 957072 - 956836 - | hypothetical protein TERM 574 957763 - 957742 - R 73 -4.5 -5.17054 | opp_overlap 957744, overlap 957744 ACAACATTTAAAAAA CATTACTGC TTCG GCAATAATA TTTGTACAAATTCCA mreC 958583 - 957744 - | rod shape-determining protein mreB 959626 - 958586 - | rod shape-determining protein RT0756 960853 - 959765 - | hypothetical protein TERM 575 960752 - 960721 - G 84 -9 -4.3341 | opp_overlap 960723 TAAAAGGAACATAAA TATTTTTGAACTTT TGTA AAAGATCAAAAATA TTAGAGATAATTAAT TERM 576 961334 - 961303 - R 100 -11.1 -4.62669 | opp_overlap 961308 961309, overlap 961309 TAATGAAATAATAAA TAAAAAGTCGAGT AATAAA ACTCGACCTTTTA AAATAATAATTAAAT TERM 577 961328 - 961309 - R 100 -7.9 -5.52807 | opp_overlap 961308 961309, overlap 961303 AATAATAAATAAAAA GTCGAGT AATAAA ACTCGAC CTTTTAAAATAATAA pal 961829 - 961362 - | peptidoglycan-associated lipoprotein precursor TERM 578 961748 - 961759 + g 87 -2.2 -6.19302 | GATTCACCATACCGG CCAT TTGT GTGG TTTTTTTTGTTGTAT fabH 963106 - 962153 - | 3-oxoacyl-(acyl carrier protein) synthase III rpmF 963317 - 963120 - | 50S ribosomal protein L32 RT0761 963411 - 963887 + | hypothetical protein ftsY 964064 - 964975 + | cell division protein FtsY TERM 579 965478 - 965465 - g 74 -2.3 -5.626 | TATTCTAGAAAAAAA CGGTT ATGA AGCCG ATGATATTATTGCAA polA 965142 - 967760 + | DNA polymerase I metK 968047 - 969195 + | S-adenosylmethionine synthetase dnaE 974262 - 970720 - | DNA polymerase III subunit alpha TERM 580 973829 - 973848 + g 71 -7.9 -3.53811 | ATAATCGCGTGTTCC TGCTTGC GGGCTA GCAAGCA TTTGCCAACAATACC udg 975701 - 974397 - | UDP-glucose 6-dehydrogenase TERM 581 974813 - 974797 - G 89 -9.5 -4.20516 | opp_overlap 974795 TCTCCATCTAACAAA GTAGCTA TTT TAGCTAC CATATTACCTGGCCG TERM 582 975954 - 975976 + G 70 -5.8 -4.32034 | opp_overlap 975951, overlap 975971 AGCTCAAATGAATTT TATTAAAAAA ACC TTTTTTAGTA TTTTGATAATACTGA TERM 583 976148 - 976134 - g 93 -8.6 -4.94962 | opp_overlap 976133 AGAATTTAAAGAAAA CCGATT ATC AATCGG GTACATTTCCTTAAG TERM 584 976207 - 976223 + G 80 -6.7 -4.80453 | AAAGATTTTAATCTT TTTTTGA ATT TCAAAAA TTTCTTTTCTCATGC TERM 585 977090 - 977068 - g 81 -10 -3.46873 | overlap 977066 GCAAATTCAATAATA GAGCTAATAA TTC CTATTAGCTC AGATGTCCCTAATAG RT0767 975946 - 978459 + | hypothetical protein ampG3 978469 - 979731 + | murein peptide permease protein AmpG tatC 979906 - 980661 + | Sec-independent protein translocase protein TatC serS 980639 - 981916 + | seryl-tRNA synthetase TERM 586 981912 - 981897 - f 90 -6.2 -5.88471 | opp_overlap 981896 GAGGATTAAAAAAAA TCACTA CATA TAGTGA ATAATTGTTTATTAA TERM 587 983413 - 983401 - g 74 -9.1 -2.85147 | opp_overlap 983398, overlap 983400 GGTAATCAATATAAT CCCTG GGG CAGGG CTATAACTTTACTGC TERM 588 984079 - 984064 - g 82 -4 -5.55698 | CATAATTTAAAAAAA CACCAA AGTA TTAGTG CAGCAGTAATTTATG virB4b 982177 - 984609 + | VirB4 protein precursor RT0772 984706 - 984575 - | hypothetical protein TERM 589 984939 - 984929 - g 78 -6.8 -4.63218 | CTCCTTGGAATAAAA GCGA TGG TCGC AATAATGATACTTGT RT0773 984721 - 988230 + | hypothetical protein TERM 590 988783 - 988760 - g 79 -8.4 -3.92522 | opp_overlap 988756 988760 CTGGAAGGGCATAAA TTTGTTATTA AACG TAATAACAAA TTATATTTTAGCCCC TERM 591 988760 - 988783 + G 79 -8.4 -3.95435 | opp_overlap 988760, overlap 988756 CTGGAAGGGCATAAA TTTGTTATTA AACG TAATAACAAA TTATATTTTAGCCCC terC 988235 - 989143 + | tellurium resistance protein RT0775 989184 - 989897 + | hypothetical protein RT0776 989995 - 991650 + | hypothetical protein TERM 592 991846 - 991862 + G 75 -5.9 -4.7173 | CTGCAGGTCTGATGA TTTTGCT TGG AGCAGAA TTTTTAGCTATGCTA nuoJ 991716 - 992333 + | NADH dehydrogenase subunit J nuoK 992326 - 992640 + | NADH dehydrogenase subunit K TERM 593 993592 - 993614 + G 76 -7.8 -3.89346 | TTATTGCTTACTCTA CATGTAGCCA ACT TGGTTATATG TTTATGGCGTGCGGA TERM 594 993671 - 993686 + G 74 -6.2 -4.36508 | overlap 993668 TCACTTAGTCACTCA TGCTTT TTTC AAAGCA TTATTATTTTTATCA TERM 595 994309 - 994293 - g 81 -3.7 -5.52347 | AATAAAAGTAAAAAA GACTG GATTCCA CAGTC AAACTATAAAATGAT nuoL 992640 - 994601 + | NADH dehydrogenase subunit L TERM 596 995865 - 995895 + G 85 -5.5 -5.37345 | AGCTAAATATGGTGG TGTCGCAAGTAAA ATGCC TGTACTTGCTACA TTTTTTATGATTACA TERM 597 996203 - 996231 + G 74 -6.9 -4.21194 | overlap 996204 TTTTAAATGTATTTC ATTTATCAGTAGA AAA TTTACTGATAAAA TTTTAACTACTGACA TERM 598 996204 - 996230 + G 81 -10.4 -3.12395 | overlap 996203 TTTAAATGTATTTCA TTTATCAGTAGA AAA TTTACTGATAAA ATTTTAACTACTGAC nuoM 994753 - 996237 + | NADH dehydrogenase subunit M ccmA 996597 - 997190 + | cytochrome c biogenesis protein CcmA TERM 599 997586 - 997568 - T 72 -6.1 -4.41895 | AATTTGTAAGTAAAA TTGTAGT TTTGT ACTACAA AGATAACATTGGAAA nuoI 999326 - 998847 - | NADH dehydrogenase subunit I nuoH 1000352 - 999333 - | NADH dehydrogenase subunit H nuoG 1002548 - 1000521 - | NADH dehydrogenase subunit G RT0785 1002907 - 1002551 - | hypothetical protein acnA 1005716 - 1003080 - | aconitate hydratase TERM 600 1003374 - 1003386 + g 74 -7.7 -3.85817 | TCGTTCAAAGCTCTC GGCAA TTA TTGCC TTTATACCAAGCAAT TERM 601 1003985 - 1003999 + g 76 -8.6 -3.42605 | overlap 1003983 CTGCATCTATCTCTT TTTGGC TTG GCCAAA TATCTTTTAAATAAA atpC 1006207 - 1005875 - | F0F1 ATP synthase subunit epsilon atpD 1007745 - 1006321 - | F0F1 ATP synthase subunit beta TERM 602 1006954 - 1006939 - G 71 -7.6 -3.40371 | GATCCTACCAAGTAA TGCTGA TACT TCAGCA CCTGCTTGAGTAAAA atpG 1008714 - 1007848 - | F0F1 ATP synthase subunit gamma TERM 603 1008797 - 1008781 - R 76 -9.5 -2.87463 | AATTTTTGCTACATA CCATGAT CAA ATCATGG CACTACACAGTAGGC atpA 1010330 - 1008792 - | F0F1 ATP synthase subunit alpha TERM 604 1008922 - 1008932 + g 72 -5.4 -4.7153 | TTTAACCTTATTTCA GCAA GCA TTGC TTTTTCAAATTCTTT atpH 1011018 - 1010467 - | F0F1 ATP synthase subunit delta pdhD2 1012521 - 1011142 - | dihydrolipoamide dehydrogenase RT0793 1013206 - 1012772 - | hypothetical protein TERM 605 1012925 - 1012941 + g 72 -6.7 -4.15249 | AATATCTTGATCTTT TGTTAAA CTT TTTAACA TTTCATTTGCTGTTT TERM 606 1014617 - 1014631 + r 71 -5.8 -4.57503 | GATCTCATAGTTATT TTCATT TTG AATGAA TTTATTATTGTCTTG mrcA 1017185 - 1014828 - | penicillin-binding protein 1A miaB2 1018526 - 1017189 - | tRNA-methylthiotransferase (MiaB protein) RT0796 1018862 - 1018722 - | hypothetical protein RT0797 1019776 - 1019270 - | hypothetical protein kefB 1021472 - 1019745 - | glutathione-regulated potassium-efflux system TERM 607 1021121 - 1021149 + gr 73 -9 -2.9176 | opp_overlap 1021117 GCGCAAGACCACCAC CGGTAATAATAG CTGCA CTACTATTACCG TCTATAAGTACCATT RT0799 1021795 - 1021469 - | hypothetical protein TERM 608 1021985 - 1021962 - g 75 -4 -5.30686 | AAGAGTTAGAAAAAA TACTTAAAAA ATCC TTTCCAAGTA GTGTAATAAAAATTA RT0800 1021931 - 1022182 + | hypothetical protein infA 1023862 - 1024077 + | translation initiation factor IF-1 TERM 609 1024488 - 1024477 - g 74 -3 -5.38047 | opp_overlap 1024477 CATTTAGACAAAAAA TAGT TCAG ACTA TTATTAAGTTCAAAA maf 1024089 - 1024772 + | Maf-like protein dksA 1025244 - 1024813 - | DnaK suppressor protein xerC 1026255 - 1025338 - | site-specific tyrosine recombinase XerC TERM 610 1026655 - 1026631 - g 77 -8.1 -3.78861 | overlap 1026621 1026629 1026650 TTATACAAAATAATA TTAATACTATT TTA AATAGTACTAA AGAAGTAACGAATTC RT0806 1026417 - 1026893 + | hypothetical protein TERM 611 1026951 - 1026896 - T 71 -6.5 -4.10453 | gap 1, opp_overlap 1026910 1026915, overlap 1026904 1026906 CAAATCTGCTTAAAA GGCACTAATA-CATATTATACCACAA TCGAG TTGTGGTATAATATGCTAGAAATGCA CTGAATTACTCGCTT TERM 612 1026943 - 1026904 - T 93 -11.9 -3.27786 | gap 1, opp_overlap 1026910 1026915, overlap 1026896 1026906 CTTAAAAGGCACTAA TA-CATATTATACCACAA TCGAG TTGTGGTATAATATGCTA GAAATGCACTGAATT TERM 613 1026940 - 1026906 - T 100 -16.1 -3.19848 | opp_overlap 1026910 1026915, overlap 1026904 1026896 TAAAAGGCACTAATA CATATTATACCACAA TCGAG TTGTGGTATAATATG CTAGAAATGCACTGA TERM 614 1026910 - 1026936 + T 88 -11.8 -2.79183 | opp_overlap 1026906 1026904 1026896, overlap 1026915 AGGCACTAATACATA TTATACCACAAT CGA GTTGTGGTATAA TATGCTAGAAATGCA RT0807 1027555 - 1026941 - | hypothetical protein phbC 1029441 - 1027687 - | poly-beta-hydroxybutyrate polymerase ubiD 1030968 - 1029490 - | 3-polyprenyl-4-hydroxybenzoate decarboxylase RT0810 1032664 - 1031084 - | hypothetical protein TERM 615 1031976 - 1031964 - G 71 -3.3 -5.29716 | overlap 1031958 TTAATATAAGAAAAA CTGCG TTT CTCAG GCACTTCAAATGCGG TERM 616 1032717 - 1032739 + r 72 -8.4 -3.24188 | opp_overlap 1032712 TACAAAAAGACTGGA TACCGGTGGT CAA GCCACGGGTA TTAGTACTAATATAC TERM 617 1032805 - 1032783 - R 79 -2 -6.14618 | opp_overlap 1032783, overlap 1032775 1032784 TATAAAACAAAAAAA TCTCTATAGT CAA ACTATATAGG CTCTTTTATTATTTT TERM 618 1033945 - 1033921 - R 75 -6.6 -4.41895 | opp_overlap 1033923 AATTTGTAATTAAAA TAATATGTAG TCCCG CTACATACTA ATATAACTATTAAAA TERM 619 1034058 - 1034074 + r 72 -8.1 -3.15249 | opp_overlap 1034054 1034052 1034058, overlap 1034073 ATAACATAATACATA TATAAGC AAA GCTTATA TTGCTACAAAATGTA TERM 620 1034074 - 1034058 - R 72 -8.1 -3.20232 | opp_overlap 1034058 1034073, overlap 1034054 1034052 ATAACATAATACATA TATAAGC AAA GCTTATA TTGCTACAAAATGTA TERM 621 1034073 - 1034095 + r 78 -7.8 -4.26351 | opp_overlap 1034058 1034054 1034052, overlap 1034058 1034076 TATAAGCAAAGCTTA TATTGCTACA AAA TGTAGCATTA TTTATTGAATTACTG TERM 622 1034076 - 1034092 + r 89 -9.5 -4.2416 | opp_overlap 1034054 1034052, overlap 1034073 AAGCAAAGCTTATAT TGCTACA AAA TGTAGCA TTATTTATTGAATTA ftsK 1037952 - 1035730 - | DNA translocase cell division protein FtsK TERM 623 1037300 - 1037310 + g 75 -4 -5.26875 | AGACTTGCTTCTTCA GTAA ATG TTAC TTTTTTACTTGCAGG TERM 624 1037420 - 1037410 - G 78 -4 -5.35354 | TATATAATTAAAAAA TGAT AGT ATCA AATTTGTTAAAAATT TERM 625 1037844 - 1037834 - G 76 -6.8 -4.45664 | opp_overlap 1037834 1037832 GTAACTGAATTAAAA GACG GAT CGTC TATATTATATGATAT TERM 626 1038096 - 1038072 - H 79 -3.7 -5.79526 | overlap 1038076 ATATTTTAAAAAAAA CGAATAAAAAA TGC TTTTTTATGCA AGGTTTTATTTAGAA map 1038759 - 1039538 + | methionine aminopeptidase TERM 627 1039935 - 1039921 - f 73 -7.2 -4.04326 | TAATGAAATACTAAA CCTTAA ACA TTAAGG TACATGATAACGTAA RT0813 1039989 - 1040969 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RT0814 1040966 - 1041292 + | hypothetical protein TERM 628 1041511 - 1041473 - T 79 -8.5 -4.11061 | gap 1, opp_overlap 1041503, overlap 1041510 CAGAATAAAATATAA CCTTTTCTATTCGATATC AAAT GATA-CAAATAAAAAAGG GCCATTAATTAAAGA TERM 629 1041529 - 1041510 - T 82 -4.2 -5.76237 | opp_overlap 1041503, overlap 1041473 GATACAAATAAAAAA GGGCCATT AATT AAAGACCC TTTTTTCTGTTAATG RT0815 1042320 - 1041580 - | outer surface protein TERM 630 1042421 - 1042441 + r 77 -7 -4.43911 | opp_overlap 1042420 1042421, overlap 1042420 AGTTTTAAGTAACAT TTCTAAGA AATTA TCTTAGAA TTTTAATTCCACTTT RT0816 1043222 - 1042545 - | outer surface protein fdxA 1043706 - 1043374 - | ferredoxin ccmC 1044403 - 1043711 - | heme exporter protein C RT0819 1044966 - 1044520 - | cytosine aminohydrolase RT0820 1045891 - 1044983 - | p34 protein/ cation transporter TERM 631 1045956 - 1045934 - H 74 -5 -5.09762 | opp_overlap 1045933 1045934 1045936 GTTTAACAAAGAAAA TATAAAATTC AAT GAGTTTTATA CTTTACAAAATTCTA RT0821 1046013 - 1046492 + | rickettsial 17 kDa surface antigen precursor TERM 632 1047154 - 1047144 - g 74 -3.2 -5.46657 | TACTGTAATAAAAAA CTCG GAT CAAG TAATATGCTTAAATG RT0822 1046578 - 1047279 + | metal transport ATP-binding protein uvrA 1051189 - 1048328 - | excinuclease ABC subunit A TERM 633 1049543 - 1049533 - G 74 -6.8 -4.30576 | GCTCTACTACCAAAA CGGT ATT ACCG AGATCCCTAAGCCTT TERM 634 1050461 - 1050477 + g 71 -6.6 -3.92869 | TTGACTCTTAACTGC TTGTGG TAATT CCACAA TTTCTAAATAAGTAA TERM 635 1051605 - 1051586 - g 70 -3.6 -5.08601 | opp_overlap 1051590 1051599, overlap 1051588 TCAGGTCAAGAAAAA TATACAAC GGAA GTTGTATT ACAAAATTTTAATTC TERM 636 1051603 - 1051588 - g 70 -6.2 -4.16909 | opp_overlap 1051590 1051599, overlap 1051586 AGGTCAAGAAAAATA TACAAC GGAA GTTGTA TTACAAAATTTTAAT RT0824 1051295 - 1051753 + | single-strand DNA-binding protein RT0825 1051877 - 1052695 + | hypothetical protein TERM 637 1053703 - 1053718 + F 76 -6.2 -4.7657 | opp_overlap 1053702 GCTATACCAAATTAT TTTGGA AAGT TCCAAA TTTTTAAAATTTTTA RT0827 1055045 - 1055362 + | hypothetical protein TERM 638 1055577 - 1055598 + G 91 -8.9 -4.83169 | AATTTAATGATTCAC TCTCTTTAT AGTA ATAAAGAGA TTTTTATGAGAGAAT TERM 639 1057093 - 1057083 - g 75 -4 -5.19916 | opp_overlap 1057090 AAAATATCTAAAAAA CTTA CTT TAAG CCCTGCTTGTCTTGC htpG 1055514 - 1057379 + | heat shock protein 90 hemA 1057541 - 1058785 + | 5-aminolevulinate synthase TERM 640 1060319 - 1060306 - g 72 -6.7 -4.16182 | GTAGTACAAATTAAA GCAGT ACAT ACTGC AGAACCTACTGTTAT tig 1059589 - 1060929 + | trigger factor obgE 1062081 - 1061089 - | GTPase ObgE TERM 641 1061192 - 1061204 + g 100 -2.7 -6.38655 | TTATTAGTAACTCTC TGAAG CTT CTTTA TTTTTTTTTGTATTT gltA 1063812 - 1062502 - | type II citrate synthase TERM 642 1063718 - 1063746 + g 100 -12.7 -3.66666 | ATATCTATTACATCT TTACCTATACTTG CTT TAAGTATAGGTAA TTTAAACATTTTACC TERM 643 1064202 - 1064221 + r 73 -6.6 -4.34444 | opp_overlap 1064206, overlap 1064206 TTCTTTTACTATTTC TAAAGTAT TTTT ATACTTTA TTTATCTTATATTAC RT0833 1065229 - 1064453 - | DNA polymerase TERM 644 1064680 - 1064655 - G 76 -7.7 -3.90112 | gap 1 TTTTTTCCAAGTAAA CTAGTTG-CAGC AGT GCTACCAACTAG AATAAGTAACTTAGG rluD 1065246 - 1066187 + | pseudouridine synthase RT0835 1066262 - 1066381 + | hypothetical protein trmB 1066692 - 1068248 + | bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase RT0837 1069155 - 1068214 - | hypothetical protein glyS 1071298 - 1069304 - | glycyl-tRNA synthetase subunit beta TERM 645 1069507 - 1069534 + g 75 -5.8 -4.77438 | opp_overlap 1069510, overlap 1069510 CTATAATTTGTTGAG AAATTATTTGAA TTAC TTCAAATAATTC TTTTTCATACTGCGT TERM 646 1069531 - 1069510 - G 71 -7.5 -3.86822 | opp_overlap 1069507 1069510 TAATTTGTTGAGAAA TTATTTGAA TTAC TTCAAATAA TTCTTTTTCATACTG TERM 647 1069510 - 1069531 + g 79 -7.5 -4.49314 | opp_overlap 1069510, overlap 1069507 TAATTTGTTGAGAAA TTATTTGAA TTAC TTCAAATAA TTCTTTTTCATACTG glyQ 1072160 - 1071291 - | glycyl-tRNA synthetase subunit alpha RT0840 1072982 - 1072353 - | hypothetical protein proP6 1074238 - 1072991 - | proline/betaine transporter ProP6 RT0842 1075400 - 1074435 - | hypothetical protein TERM 648 1074537 - 1074558 + g 77 -4.5 -5.20331 | GTTTTTAATTTTTTT TCTTTTTTC TTGA GATAAAAGA TTTTCTTTATTATTT TERM 649 1074937 - 1074954 + g 78 -6.3 -4.72617 | ATCTTAAATAATTTT TTGTGCG ACTC CGCATAA TTTATTATTTTGTCA RT0843 1076045 - 1075410 - | hypothetical protein TERM 650 1076144 - 1076170 + r 80 -8.3 -4.25256 | opp_overlap 1076143 1076149, overlap 1076149 ACCATTAGACCCAAG TAAAATACTAA TAGTT TTAGTATTTTA TTGTTTTACTGGACA TERM 651 1076149 - 1076165 + r 70 -3.8 -5.10656 | opp_overlap 1076149 1076143, overlap 1076144 TAGACCCAAGTAAAA TACTAA TAGTT TTAGTA TTTTATTGTTTTACT RT0844 1077773 - 1076211 - | hypothetical protein alaS 1077967 - 1080600 + | alanyl-tRNA synthetase truA 1082673 - 1081936 - | tRNA pseudouridine synthase A rpoD 1084678 - 1082771 - | RNA polymerase sigma factor RpoD dnaG 1086484 - 1084703 - | DNA primase TERM 652 1086346 - 1086320 - G 81 -6 -5.25799 | AAAACAATAGAAAAA TCTCTTACTATC ACT AACAGTAAAAGA TGGTGTCTTTTCTTG RT0849 1087098 - 1086484 - | hypothetical protein greA 1087371 - 1087859 + | transcription elongation factor GreA pntAB 1088330 - 1087932 - | NAD(P)(+) transhydrogenase (AB-specific) subunit alpha pntA 1089456 - 1088305 - | NAD(P)(+) transhydrogenase (B-specific) subunit alpha TERM 653 1088760 - 1088741 - GH 90 -10.8 -3.31144 | TGTTTAGCTTTATAA GCTTCAGA GCCT TCTGAAGC ATAACCTGAGCTATC TERM 654 1088821 - 1088809 - GH 70 -6.3 -4.17296 | opp_overlap 1088808 1088809 TTCTACACATACAAA CTTAG CTC CTAAG CTTTCTACCTGTTCT TERM 655 1089510 - 1089486 - H 79 -8.1 -4.10731 | AATAATATAACTAAA GTATTTTAAAC ATA ATTTAAAATAC AAAACAATAAAAATG RT0853 1089523 - 1090164 + | hypothetical protein dnaX 1090425 - 1091627 + | DNA polymerase III subunits gamma and tau dnaX 1090425 - 1091950 + | DNA polymerase III subunits gamma and tau RT0857 1091955 - 1092278 + | hypothetical protein RT0858 1093083 - 1092388 - | hypothetical protein TERM 656 1093498 - 1093512 + r 73 -7.2 -4.05069 | TTAGTGATAGTATTC CTAGTT TAC AACTAG TTATGTTGTTTTTTA glnQ 1094712 - 1093990 - | glutamine transport ATP-binding protein GlnQ TERM 657 1094158 - 1094169 + g 70 -5.8 -4.33767 | TGTAACCACTACCAT GCTC ATTT GAGC TTTTAATAAATTTAT phnP 1095465 - 1094716 - | phosphonate metabolism protein PhnP TERM 658 1095223 - 1095245 + g 78 -9.2 -3.25942 | ATCATCTATACCGTT CACATGATCA GAA TGACCATGTG TTAATATAGCACAAT TERM 659 1095860 - 1095845 - g 72 -6.2 -4.34811 | overlap 1095853 AATAAATACTGAAAA TGAAAG ATGC CTTTCA AGCTTTCCAAGCAGC RT0861 1095477 - 1096139 + | hypothetical protein RT0862 1096227 - 1097309 + | hypothetical protein holC 1097779 - 1097315 - | DNA polymerase III subunit chi dapE 1099201 - 1098050 - | succinyl-diaminopimelate desuccinylase TERM 660 1099274 - 1099255 - R 70 -3 -5.4588 | opp_overlap 1099258 1099258 1099271 1099272, overlap 1099258 1099272 TAAAAGTACAAAAAA CAATTTTT ACTA AAAAATTA TTGCTATAAATTTAT TERM 661 1099306 - 1099272 - R 95 -8.3 -5.14965 | gap 1, opp_overlap 1099272 1099271, overlap 1099255 ATTTTTACTAAAAAA TTATTGCTATAAATTT ATAC AAATTTAT-GCAATAA CTTATTAATTAGCTT RT0866 1100893 - 1100369 - | hypothetical protein lipB 1101519 - 1100890 - | lipoyltransferase TERM 662 1101901 - 1101879 - R 80 -3.4 -5.86061 | overlap 1101881 1101882 GTTGATCAAAAAAAA CACTCTAGCT ATC AGCTAGAACT AGAGTATCAATGAAA TERM 663 1101899 - 1101881 - R 85 -8.2 -4.5787 | overlap 1101879 1101882 TGATCAAAAAAAACA CTCTAGCT ATC AGCTAGAA CTAGAGTATCAATGA TERM 664 1101898 - 1101882 - R 82 -9.5 -3.33095 | overlap 1101881 1101879 GATCAAAAAAAACAC TCTAGCT ATC AGCTAGA ACTAGAGTATCAATG rpsP 1102535 - 1102200 - | 30S ribosomal protein S16 TERM 665 1102328 - 1102353 + g 93 -11.3 -3.32966 | overlap 1102316 1102326 TTGCGACTCGCTCAG TTGGTTTAGCA CCAG TGCTAAGCCAA TATTCTATACGATCT rpmG 1102712 - 1102542 - | 50S ribosomal protein L33 TERM 666 1102686 - 1102698 + g 73 -3.5 -5.29846 | ACTTACTAGCCTTAC TAAAA CAT TTTTA TTTTTCTTTGCCATT mutL 1104642 - 1102840 - | DNA mismatch repair protein RT0872 1104791 - 1104639 - | hypothetical protein TERM 667 1105712 - 1105700 - H 74 -6.3 -4.6821 | AATCTTAATATAAAA CACTT AAA AAGTG ATAAACTAGATTATA proP7 1105859 - 1107130 + | proline/betaine transporter ProP7 TERM 668 1107559 - 1107542 - g 71 -4.9 -4.79352 | overlap 1107543 TTATCCAGAAGAAAA CGAAACT GCAA AGTTTCA TACAGCTTTTAAAGA hemF 1107114 - 1107953 + | coproporphyrinogen III oxidase RT0875 1109067 - 1108630 - | hypothetical protein hemH 1110119 - 1109079 - | ferrochelatase TERM 669 1109558 - 1109582 + gr 76 -2.9 -5.64321 | opp_overlap 1109559, overlap 1109551 1109559 CGTGAGCAGAAAATA ATATACGAAAA TTT TTATCGTATAG TTTTTCTTTTATTAT TERM 670 1109581 - 1109559 - GR 73 -6.4 -4.35042 | opp_overlap 1109559 1109558 1109551 GTGAGCAGAAAATAA TATACGAAAA TTT TTATCGTATA GTTTTTCTTTTATTA TERM 671 1109845 - 1109833 - GR 71 -3.4 -5.18715 | opp_overlap 1109833 ATAAAAATAATAAAA TCCT CTTTT AGGA TTTCCTTTAACTTTT hemE 1111113 - 1110076 - | uroporphyrinogen decarboxylase TERM 672 1110205 - 1110215 + g 70 -5.4 -4.58242 | overlap 1110198 ATTCTTTCCTTTCAT TCCT TGA AGGA TTTTATAAGTTTTTT TERM 673 1110536 - 1110546 + g 70 -5.4 -4.53774 | opp_overlap 1110536 1110534 AAAATCTTTAAAATA TCTG CTC CAGA TTTTGCTTGATTTAT